This directory contains zipped multiple alignments of the Chicken genome
(galGal2, Feb. 2004) to the following assemblies:

 - Human May 2004 (hg17)
 - Mouse May 2004 (mm5)
 - Opossum Oct. 2004 (monDom1)
 - Frog Oct. 2004 (xenTro1) 
 - Zebrafish Jun. 2004 (danRer2)
 - Tetraodon Feb. 2004 (tetNig1)

The chr*.maf.gz files each contain all the alignments to that 
particular chicken chromosome.  

For a description of the multiple alignment format (MAF), 
see http://genome.ucsc.edu/goldenPath/help/maf.html.

-------------------------------------------------------------------
If you plan to download a large file or multiple files from this 
directory, we recommend you use ftp rather than downloading the files 
via our website. To do so, ftp to hgdownload.cse.ucsc.edu, then go to 
the directory goldenPath/galGal2/multiz7way/. To download multiple 
files, use the "mget" command:

    mget <filename1> <filename2> ...
    - or -
    mget -a (to download all the files in the directory) 

All the files in this directory are freely available for public use.

For data restrictions regarding the aligned genomes, see 
http://genome.ucsc.edu/goldenPath/credits.html .

      Name                    Last modified      Size  Description
Parent Directory - md5sum.txt 2005-04-27 11:02 2.5K maf/ 2021-08-03 18:49 - chrZ_random.maf.gz 2005-04-27 11:02 3.0M chrZ.maf.gz 2005-04-27 11:02 5.9M chrW_random.maf.gz 2005-04-27 11:02 49K chrW.maf.gz 2005-04-27 11:02 1.3M chrUn.maf.gz 2005-04-27 11:02 32M chrM.maf.gz 2005-04-27 11:01 36K chrE64.maf.gz 2005-04-27 11:01 2.1K chrE50C23.maf.gz 2005-04-27 11:01 10K chrE26C13.maf.gz 2005-04-27 11:01 148K chrE22C19W28.maf.gz 2005-04-27 11:01 36K chr32_random.maf.gz 2005-04-27 11:00 4.3K chr32.maf.gz 2005-04-27 11:00 574K chr28_random.maf.gz 2005-04-27 11:00 14K chr28.maf.gz 2005-04-27 11:00 1.9M chr27_random.maf.gz 2005-04-27 11:00 606K chr27.maf.gz 2005-04-27 11:00 911K chr26.maf.gz 2005-04-27 11:00 1.6M chr24_random.maf.gz 2005-04-27 11:00 46K chr24.maf.gz 2005-04-27 11:00 2.1M chr23.maf.gz 2005-04-27 11:00 2.0M chr22.maf.gz 2005-04-27 11:00 478K chr21.maf.gz 2005-04-27 11:00 2.5M chr20.maf.gz 2005-04-27 11:00 3.9M chr19.maf.gz 2005-04-27 10:59 3.6M chr18.maf.gz 2005-04-27 10:59 2.7M chr17.maf.gz 2005-04-27 10:59 3.5M chr16_random.maf.gz 2005-04-27 10:59 97K chr16.maf.gz 2005-04-27 10:59 141K chr15.maf.gz 2005-04-27 10:59 4.0M chr14.maf.gz 2005-04-27 10:59 5.8M chr13_random.maf.gz 2005-04-27 10:59 397K chr13.maf.gz 2005-04-27 10:59 4.4M chr12.maf.gz 2005-04-27 10:59 5.0M chr11_random.maf.gz 2005-04-27 10:59 643K chr11.maf.gz 2005-04-27 10:59 5.3M chr10_random.maf.gz 2005-04-27 10:59 668K chr10.maf.gz 2005-04-27 10:59 6.2M chr9.maf.gz 2005-04-27 11:01 5.9M chr8.maf.gz 2005-04-27 11:01 8.2M chr7_random.maf.gz 2005-04-27 11:01 2.7K chr7.maf.gz 2005-04-27 11:01 10M chr6_random.maf.gz 2005-04-27 11:01 534 chr6.maf.gz 2005-04-27 11:01 7.7M chr5_random.maf.gz 2005-04-27 11:01 14K chr5.maf.gz 2005-04-27 11:01 13M chr4_random.maf.gz 2005-04-27 11:01 197K chr4.maf.gz 2005-04-27 11:01 18M chr3_random.maf.gz 2005-04-27 11:00 928K chr3.maf.gz 2005-04-27 11:00 22M chr2_random.maf.gz 2005-04-27 11:00 23K chr2.maf.gz 2005-04-27 11:00 27M chr1_random.maf.gz 2005-04-27 10:59 248K chr1.maf.gz 2005-04-27 10:59 34M