This directory contains zipped multiple alignments of the Chicken genome
(galGal2, Feb. 2004) to the following assemblies:

 - Human May 2004 (hg17)
 - Mouse May 2004 (mm5)
 - Opossum Oct. 2004 (monDom1)
 - Frog Oct. 2004 (xenTro1) 
 - Zebrafish Jun. 2004 (danRer2)
 - Tetraodon Feb. 2004 (tetNig1)

The chr*.maf.gz files each contain all the alignments to that 
particular chicken chromosome.  

For a description of the multiple alignment format (MAF), 
see http://genome.ucsc.edu/goldenPath/help/maf.html.

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If you plan to download a large file or multiple files from this 
directory, we recommend you use ftp rather than downloading the files 
via our website. To do so, ftp to hgdownload.cse.ucsc.edu, then go to 
the directory goldenPath/galGal2/multiz7way/. To download multiple 
files, use the "mget" command:

    mget <filename1> <filename2> ...
    - or -
    mget -a (to download all the files in the directory) 

All the files in this directory are freely available for public use.

For data restrictions regarding the aligned genomes, see 
http://genome.ucsc.edu/goldenPath/credits.html .

      Name                    Last modified      Size  Description
Parent Directory - maf/ 2021-08-03 18:49 - chr6_random.maf.gz 2005-04-27 11:01 534 chrE64.maf.gz 2005-04-27 11:01 2.1K md5sum.txt 2005-04-27 11:02 2.5K chr7_random.maf.gz 2005-04-27 11:01 2.7K chr32_random.maf.gz 2005-04-27 11:00 4.3K chrE50C23.maf.gz 2005-04-27 11:01 10K chr28_random.maf.gz 2005-04-27 11:00 14K chr5_random.maf.gz 2005-04-27 11:01 14K chr2_random.maf.gz 2005-04-27 11:00 23K chrE22C19W28.maf.gz 2005-04-27 11:01 36K chrM.maf.gz 2005-04-27 11:01 36K chr24_random.maf.gz 2005-04-27 11:00 46K chrW_random.maf.gz 2005-04-27 11:02 49K chr16_random.maf.gz 2005-04-27 10:59 97K chr16.maf.gz 2005-04-27 10:59 141K chrE26C13.maf.gz 2005-04-27 11:01 148K chr4_random.maf.gz 2005-04-27 11:01 197K chr1_random.maf.gz 2005-04-27 10:59 248K chr13_random.maf.gz 2005-04-27 10:59 397K chr22.maf.gz 2005-04-27 11:00 478K chr32.maf.gz 2005-04-27 11:00 574K chr27_random.maf.gz 2005-04-27 11:00 606K chr11_random.maf.gz 2005-04-27 10:59 643K chr10_random.maf.gz 2005-04-27 10:59 668K chr27.maf.gz 2005-04-27 11:00 911K chr3_random.maf.gz 2005-04-27 11:00 928K chrW.maf.gz 2005-04-27 11:02 1.3M chr26.maf.gz 2005-04-27 11:00 1.6M chr28.maf.gz 2005-04-27 11:00 1.9M chr23.maf.gz 2005-04-27 11:00 2.0M chr24.maf.gz 2005-04-27 11:00 2.1M chr21.maf.gz 2005-04-27 11:00 2.5M chr18.maf.gz 2005-04-27 10:59 2.7M chrZ_random.maf.gz 2005-04-27 11:02 3.0M chr17.maf.gz 2005-04-27 10:59 3.5M chr19.maf.gz 2005-04-27 10:59 3.6M chr20.maf.gz 2005-04-27 11:00 3.9M chr15.maf.gz 2005-04-27 10:59 4.0M chr13.maf.gz 2005-04-27 10:59 4.4M chr12.maf.gz 2005-04-27 10:59 5.0M chr11.maf.gz 2005-04-27 10:59 5.3M chr14.maf.gz 2005-04-27 10:59 5.8M chrZ.maf.gz 2005-04-27 11:02 5.9M chr9.maf.gz 2005-04-27 11:01 5.9M chr10.maf.gz 2005-04-27 10:59 6.2M chr6.maf.gz 2005-04-27 11:01 7.7M chr8.maf.gz 2005-04-27 11:01 8.2M chr7.maf.gz 2005-04-27 11:01 10M chr5.maf.gz 2005-04-27 11:01 13M chr4.maf.gz 2005-04-27 11:01 18M chr3.maf.gz 2005-04-27 11:00 22M chr2.maf.gz 2005-04-27 11:00 27M chrUn.maf.gz 2005-04-27 11:02 32M chr1.maf.gz 2005-04-27 10:59 34M