This directory contains a dump of the UCSC genome annotation database for the Oct. 2004 assembly of the fugu genome (fr2, JGI V4.0). The annotations were generated by UCSC and collaborators worldwide. This assembly was produced by the US DOE Joint Genome Institute (JGI). For more information on the fugu genome, see the project website: http://genome.jgi-psf.org/Takru4/Takru4.info.html http://www.fugu-sg.org/ Files included in this directory (updated nightly): - *.sql files: the MySQL commands used to create the tables - *.txt.gz files: the database tables in a tab-delimited format compressed with gzip. To see descriptions of the tables underlying Genome Browser annotation tracks, select the table in the Table Browser: http://genome.ucsc.edu/cgi-bin/hgTables?db=fr2 and click the "describe table schema" button. There is also a "view table schema" link on the configuration page for each track. --------------------------------------------------------------- If you plan to download a large file or multiple files from this directory, we recommend you use ftp rather than downloading the files via our website. To do so, ftp to hgdownload.cse.ucsc.edu, then go to the directory goldenPath/fr2/database/. To download multiple files, use the "mget" command: mget <filename1> <filename2> ... - or - mget -a (to download all the files in the directory) 1. These data have been freely provided by the JGI for use in the UCSC Genome Browser.
Name Last modified Size Description
Parent Directory - xenoMrna.txt.gz 2020-08-21 19:09 231M xenoMrna.sql 2020-08-21 19:09 2.1K windowmaskerSdust.txt.gz 2007-04-11 12:02 12M windowmaskerSdust.sql 2007-04-11 12:02 1.3K trackDb.txt.gz 2023-03-28 13:49 29K trackDb.sql 2023-03-28 13:49 2.1K tableList.txt.gz 2024-10-13 03:16 4.3K tableList.sql 2024-10-13 03:16 1.6K tableDescriptions.txt.gz 2024-10-12 02:03 5.9K tableDescriptions.sql 2024-10-12 02:03 1.5K tRNAs.txt.gz 2012-04-15 21:41 18K tRNAs.sql 2012-04-15 21:41 1.7K simpleRepeat.txt.gz 2007-04-11 12:02 2.7M simpleRepeat.sql 2007-04-11 12:02 2.0K phastConsElements5way.txt.gz 2007-04-11 12:02 10M phastConsElements5way.sql 2007-04-11 12:02 1.4K phastCons5.txt.gz 2007-04-11 12:02 10M phastCons5.sql 2007-04-11 12:01 1.7K netTetNig2.txt.gz 2010-03-14 10:52 16M netTetNig2.sql 2010-03-14 10:52 2.0K netOryLat2.txt.gz 2008-11-16 08:34 12M netOryLat2.sql 2008-11-16 08:34 2.2K netMm9.txt.gz 2007-09-15 14:47 4.9M netMm9.sql 2007-09-15 14:47 2.2K netHg19.txt.gz 2009-10-11 05:54 5.1M netHg19.sql 2009-10-11 05:54 2.3K netGasAcu1.txt.gz 2007-04-11 12:00 11M netGasAcu1.sql 2007-04-11 11:59 2.2K netGalGal3.txt.gz 2007-04-11 11:59 3.9M netGalGal3.sql 2007-04-11 11:59 2.2K netDanRer7.txt.gz 2011-02-27 21:42 8.5M netDanRer7.sql 2011-02-27 21:42 2.0K multiz5waySummary.txt.gz 2007-04-11 11:59 1.9M multiz5waySummary.sql 2007-04-11 11:59 1.5K multiz5wayFrames.txt.gz 2007-04-11 11:59 11M multiz5wayFrames.sql 2007-04-11 11:58 1.6K multiz5way.txt.gz 2007-04-11 11:58 20M multiz5way.sql 2007-04-11 11:58 1.4K mrnaOrientInfo.txt.gz 2020-05-08 00:49 18K mrnaOrientInfo.sql 2020-05-08 00:49 1.8K microsat.txt.gz 2015-08-23 16:31 166K microsat.sql 2015-08-23 16:31 1.5K history.txt.gz 2010-07-04 15:43 781 history.sql 2010-07-04 15:43 1.5K hgFindSpec.txt.gz 2023-03-28 13:49 749 hgFindSpec.sql 2023-03-28 13:49 1.8K grp.txt.gz 2014-03-02 03:40 208 grp.sql 2014-03-02 03:40 1.4K gc5Base.txt.gz 2007-04-11 11:57 1.6M gc5Base.sql 2007-04-11 11:57 1.7K gbLoaded.txt.gz 2020-08-21 19:31 34K gbLoaded.sql 2020-08-21 19:31 1.6K extFile.txt.gz 2007-04-11 11:56 102 extFile.sql 2007-04-11 11:56 1.3K estOrientInfo.txt.gz 2019-03-17 09:24 3.2M estOrientInfo.sql 2019-03-17 09:24 1.8K ensemblToGeneName.txt.gz 2018-08-05 06:34 190K ensemblToGeneName.sql 2018-08-05 06:34 1.4K ensemblSource.txt.gz 2018-08-05 06:34 119K ensemblSource.sql 2018-08-05 06:34 1.3K ensPep.txt.gz 2018-08-05 06:34 7.3M ensPep.sql 2018-08-05 06:34 1.3K ensGtp.txt.gz 2018-08-05 06:34 392K ensGtp.sql 2018-08-05 06:34 1.4K ensGene.txt.gz 2018-08-05 06:34 3.2M ensGene.sql 2018-08-05 06:34 1.9K chromInfo.txt.gz 2007-04-11 11:55 78 chromInfo.sql 2007-04-11 11:55 1.2K chromAlias.txt.gz 2018-08-05 06:34 51 chromAlias.sql 2018-08-05 06:34 1.4K chrUn_rmsk.txt.gz 2007-04-11 11:55 4.7M chrUn_rmsk.sql 2007-04-11 11:55 1.8K chrUn_mrna.txt.gz 2020-05-08 00:49 77K chrUn_mrna.sql 2020-05-08 00:49 2.1K chrUn_intronEst.txt.gz 2019-03-17 09:24 8.1M chrUn_intronEst.sql 2019-03-17 09:24 2.1K chrUn_gold.txt.gz 2007-04-11 11:55 125K chrUn_gold.sql 2007-04-11 11:55 1.6K chrUn_gap.txt.gz 2007-04-11 11:55 85K chrUn_gap.sql 2007-04-11 11:55 1.5K chrUn_est.txt.gz 2019-03-17 09:24 13M chrUn_est.sql 2019-03-17 09:24 2.1K chrUn_chainOryLat2Link.txt.gz 2008-11-16 08:35 192M chrUn_chainOryLat2Link.sql 2008-11-16 08:34 1.4K chrUn_chainOryLat2.txt.gz 2008-11-16 08:33 32M chrUn_chainOryLat2.sql 2008-11-16 08:33 1.7K chrUn_chainMm9Link.txt.gz 2007-09-15 14:46 30M chrUn_chainMm9Link.sql 2007-09-15 14:46 1.4K chrUn_chainMm9.txt.gz 2007-09-15 14:46 4.7M chrUn_chainMm9.sql 2007-09-15 14:46 1.6K chrUn_chainGasAcu1Link.txt.gz 2007-04-11 11:47 105M chrUn_chainGasAcu1Link.sql 2007-04-11 11:45 1.4K chrUn_chainGasAcu1.txt.gz 2007-04-11 11:45 11M chrUn_chainGasAcu1.sql 2007-04-11 11:45 1.7K chrUn_chainGalGal3Link.txt.gz 2007-04-11 11:45 15M chrUn_chainGalGal3Link.sql 2007-04-11 11:45 1.4K chrUn_chainGalGal3.txt.gz 2007-04-11 11:45 1.8M chrUn_chainGalGal3.sql 2007-04-11 11:45 1.7K chrM_rmsk.txt.gz 2007-04-11 09:29 97 chrM_rmsk.sql 2007-04-11 09:29 1.8K chrM_mrna.txt.gz 2016-07-03 06:35 34 chrM_mrna.sql 2016-07-03 06:35 2.1K chrM_intronEst.txt.gz 2016-07-03 06:35 39 chrM_intronEst.sql 2016-07-03 06:35 2.1K chrM_gold.txt.gz 2007-04-11 09:29 34 chrM_gold.sql 2007-04-11 09:29 1.6K chrM_gap.txt.gz 2007-04-11 09:29 33 chrM_gap.sql 2007-04-11 09:29 1.5K chrM_est.txt.gz 2019-03-17 09:24 283K chrM_est.sql 2019-03-17 09:24 2.1K chrM_chainOryLat2Link.txt.gz 2008-11-16 08:34 2.6K chrM_chainOryLat2Link.sql 2008-11-16 08:34 1.4K chrM_chainOryLat2.txt.gz 2008-11-16 08:34 803 chrM_chainOryLat2.sql 2008-11-16 08:34 1.7K chrM_chainMm9Link.txt.gz 2007-09-15 14:46 16K chrM_chainMm9Link.sql 2007-09-15 14:46 1.4K chrM_chainMm9.txt.gz 2007-09-15 14:46 2.1K chrM_chainMm9.sql 2007-09-15 14:46 1.6K chrM_chainGasAcu1Link.txt.gz 2007-04-11 09:29 550 chrM_chainGasAcu1Link.sql 2007-04-11 09:29 1.4K chrM_chainGasAcu1.txt.gz 2007-04-11 09:29 87 chrM_chainGasAcu1.sql 2007-04-11 09:29 1.7K chrM_chainGalGal3Link.txt.gz 2007-04-11 09:29 3.0K chrM_chainGalGal3Link.sql 2007-04-11 09:29 1.4K chrM_chainGalGal3.txt.gz 2007-04-11 09:29 395 chrM_chainGalGal3.sql 2007-04-11 09:29 1.7K chainTetNig2Link.txt.gz 2010-03-14 10:52 110M chainTetNig2Link.sql 2010-03-14 10:51 1.5K chainTetNig2.txt.gz 2010-03-14 10:51 12M chainTetNig2.sql 2010-03-14 10:51 1.6K chainHg19Link.txt.gz 2009-10-11 05:54 41M chainHg19Link.sql 2009-10-11 05:54 1.5K chainHg19.txt.gz 2009-10-11 05:54 7.5M chainHg19.sql 2009-10-11 05:54 1.8K chainDanRer7Link.txt.gz 2011-02-27 21:44 125M chainDanRer7Link.sql 2011-02-27 21:43 1.5K chainDanRer7.txt.gz 2011-02-27 21:43 35M chainDanRer7.sql 2011-02-27 21:42 1.6K blastHg18KG.txt.gz 2009-12-20 11:35 2.9M blastHg18KG.sql 2009-12-20 11:35 2.3K bigFiles.txt.gz 2024-10-13 03:16 33 bigFiles.sql 2024-10-13 03:16 1.4K augustusGene.txt.gz 2015-07-26 13:30 2.5M augustusGene.sql 2015-07-26 13:30 1.9K all_mrna.txt.gz 2020-05-08 00:35 77K all_mrna.sql 2020-05-08 00:35 2.1K all_est.txt.gz 2019-03-17 09:24 14M all_est.sql 2019-03-17 09:24 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