This directory contains a dump of the UCSC genome annotation database for
the Oct. 2004 assembly of the fugu genome (fr2, JGI V4.0).
The annotations were generated by UCSC and collaborators worldwide.
This assembly was produced by the US DOE Joint Genome Institute (JGI).
For more information on the fugu genome, see the project website:
http://genome.jgi-psf.org/Takru4/Takru4.info.html
http://www.fugu-sg.org/
Files included in this directory (updated nightly):
- *.sql files: the MySQL commands used to create the tables
- *.txt.gz files: the database tables in a tab-delimited format
compressed with gzip.
To see descriptions of the tables underlying Genome Browser annotation
tracks, select the table in the Table Browser:
http://genome.ucsc.edu/cgi-bin/hgTables?db=fr2
and click the "describe table schema" button. There is also a "view
table schema" link on the configuration page for each track.
---------------------------------------------------------------
If you plan to download a large file or multiple files from this
directory, we recommend you use ftp rather than downloading the files
via our website. To do so, ftp to hgdownload.cse.ucsc.edu, then go to
the directory goldenPath/fr2/database/. To download multiple
files, use the "mget" command:
mget <filename1> <filename2> ...
- or -
mget -a (to download all the files in the directory)
1. These data have been freely provided by the JGI for use in the
UCSC Genome Browser.
Name Last modified Size Description
Parent Directory -
xenoMrna.txt.gz 2020-08-21 19:09 231M
xenoMrna.sql 2020-08-21 19:09 2.1K
windowmaskerSdust.txt.gz 2007-04-11 12:02 12M
windowmaskerSdust.sql 2007-04-11 12:02 1.3K
trackDb_pushedout.txt.gz 2021-12-27 12:22 28K
trackDb_pushedout.sql 2021-12-27 12:22 2.1K
trackDb.txt.gz 2023-03-28 13:49 29K
trackDb.sql 2023-03-28 13:49 2.1K
tableList.txt.gz 2024-04-14 03:16 4.4K
tableList.sql 2024-04-14 03:16 1.6K
tableDescriptions.txt.gz 2024-04-13 02:03 5.9K
tableDescriptions.sql 2024-04-13 02:03 1.5K
tRNAs.txt.gz 2012-04-15 21:41 18K
tRNAs.sql 2012-04-15 21:41 1.7K
simpleRepeat.txt.gz 2007-04-11 12:02 2.7M
simpleRepeat.sql 2007-04-11 12:02 2.0K
phastConsElements5way.txt.gz 2007-04-11 12:02 10M
phastConsElements5way.sql 2007-04-11 12:02 1.4K
phastCons5.txt.gz 2007-04-11 12:02 10M
phastCons5.sql 2007-04-11 12:01 1.7K
netTetNig2.txt.gz 2010-03-14 10:52 16M
netTetNig2.sql 2010-03-14 10:52 2.0K
netOryLat2.txt.gz 2008-11-16 08:34 12M
netOryLat2.sql 2008-11-16 08:34 2.2K
netMm9.txt.gz 2007-09-15 14:47 4.9M
netMm9.sql 2007-09-15 14:47 2.2K
netHg19.txt.gz 2009-10-11 05:54 5.1M
netHg19.sql 2009-10-11 05:54 2.3K
netGasAcu1.txt.gz 2007-04-11 12:00 11M
netGasAcu1.sql 2007-04-11 11:59 2.2K
netGalGal3.txt.gz 2007-04-11 11:59 3.9M
netGalGal3.sql 2007-04-11 11:59 2.2K
netDanRer7.txt.gz 2011-02-27 21:42 8.5M
netDanRer7.sql 2011-02-27 21:42 2.0K
multiz5waySummary.txt.gz 2007-04-11 11:59 1.9M
multiz5waySummary.sql 2007-04-11 11:59 1.5K
multiz5wayFrames.txt.gz 2007-04-11 11:59 11M
multiz5wayFrames.sql 2007-04-11 11:58 1.6K
multiz5way.txt.gz 2007-04-11 11:58 20M
multiz5way.sql 2007-04-11 11:58 1.4K
mrnaOrientInfo.txt.gz 2020-05-08 00:49 18K
mrnaOrientInfo.sql 2020-05-08 00:49 1.8K
microsat.txt.gz 2015-08-23 16:31 166K
microsat.sql 2015-08-23 16:31 1.5K
history.txt.gz 2010-07-04 15:43 781
history.sql 2010-07-04 15:43 1.5K
hgFindSpec_pushedout.txt.gz 2021-12-27 12:22 710
hgFindSpec_pushedout.sql 2021-12-27 12:22 1.8K
hgFindSpec.txt.gz 2023-03-28 13:49 749
hgFindSpec.sql 2023-03-28 13:49 1.8K
grp.txt.gz 2014-03-02 03:40 208
grp.sql 2014-03-02 03:40 1.4K
gc5Base.txt.gz 2007-04-11 11:57 1.6M
gc5Base.sql 2007-04-11 11:57 1.7K
gbLoaded.txt.gz 2020-08-21 19:31 34K
gbLoaded.sql 2020-08-21 19:31 1.6K
extFile.txt.gz 2007-04-11 11:56 102
extFile.sql 2007-04-11 11:56 1.3K
estOrientInfo.txt.gz 2019-03-17 09:24 3.2M
estOrientInfo.sql 2019-03-17 09:24 1.8K
ensemblToGeneName.txt.gz 2018-08-05 06:34 190K
ensemblToGeneName.sql 2018-08-05 06:34 1.4K
ensemblSource.txt.gz 2018-08-05 06:34 119K
ensemblSource.sql 2018-08-05 06:34 1.3K
ensPep.txt.gz 2018-08-05 06:34 7.3M
ensPep.sql 2018-08-05 06:34 1.3K
ensGtp.txt.gz 2018-08-05 06:34 392K
ensGtp.sql 2018-08-05 06:34 1.4K
ensGene.txt.gz 2018-08-05 06:34 3.2M
ensGene.sql 2018-08-05 06:34 1.9K
chromInfo.txt.gz 2007-04-11 11:55 78
chromInfo.sql 2007-04-11 11:55 1.2K
chromAlias.txt.gz 2018-08-05 06:34 51
chromAlias.sql 2018-08-05 06:34 1.4K
chrUn_rmsk.txt.gz 2007-04-11 11:55 4.7M
chrUn_rmsk.sql 2007-04-11 11:55 1.8K
chrUn_mrna.txt.gz 2020-05-08 00:49 77K
chrUn_mrna.sql 2020-05-08 00:49 2.1K
chrUn_intronEst.txt.gz 2019-03-17 09:24 8.1M
chrUn_intronEst.sql 2019-03-17 09:24 2.1K
chrUn_gold.txt.gz 2007-04-11 11:55 125K
chrUn_gold.sql 2007-04-11 11:55 1.6K
chrUn_gap.txt.gz 2007-04-11 11:55 85K
chrUn_gap.sql 2007-04-11 11:55 1.5K
chrUn_est.txt.gz 2019-03-17 09:24 13M
chrUn_est.sql 2019-03-17 09:24 2.1K
chrUn_chainOryLat2Link.txt.gz 2008-11-16 08:35 192M
chrUn_chainOryLat2Link.sql 2008-11-16 08:34 1.4K
chrUn_chainOryLat2.txt.gz 2008-11-16 08:33 32M
chrUn_chainOryLat2.sql 2008-11-16 08:33 1.7K
chrUn_chainMm9Link.txt.gz 2007-09-15 14:46 30M
chrUn_chainMm9Link.sql 2007-09-15 14:46 1.4K
chrUn_chainMm9.txt.gz 2007-09-15 14:46 4.7M
chrUn_chainMm9.sql 2007-09-15 14:46 1.6K
chrUn_chainGasAcu1Link.txt.gz 2007-04-11 11:47 105M
chrUn_chainGasAcu1Link.sql 2007-04-11 11:45 1.4K
chrUn_chainGasAcu1.txt.gz 2007-04-11 11:45 11M
chrUn_chainGasAcu1.sql 2007-04-11 11:45 1.7K
chrUn_chainGalGal3Link.txt.gz 2007-04-11 11:45 15M
chrUn_chainGalGal3Link.sql 2007-04-11 11:45 1.4K
chrUn_chainGalGal3.txt.gz 2007-04-11 11:45 1.8M
chrUn_chainGalGal3.sql 2007-04-11 11:45 1.7K
chrM_rmsk.txt.gz 2007-04-11 09:29 97
chrM_rmsk.sql 2007-04-11 09:29 1.8K
chrM_mrna.txt.gz 2016-07-03 06:35 34
chrM_mrna.sql 2016-07-03 06:35 2.1K
chrM_intronEst.txt.gz 2016-07-03 06:35 39
chrM_intronEst.sql 2016-07-03 06:35 2.1K
chrM_gold.txt.gz 2007-04-11 09:29 34
chrM_gold.sql 2007-04-11 09:29 1.6K
chrM_gap.txt.gz 2007-04-11 09:29 33
chrM_gap.sql 2007-04-11 09:29 1.5K
chrM_est.txt.gz 2019-03-17 09:24 283K
chrM_est.sql 2019-03-17 09:24 2.1K
chrM_chainOryLat2Link.txt.gz 2008-11-16 08:34 2.6K
chrM_chainOryLat2Link.sql 2008-11-16 08:34 1.4K
chrM_chainOryLat2.txt.gz 2008-11-16 08:34 803
chrM_chainOryLat2.sql 2008-11-16 08:34 1.7K
chrM_chainMm9Link.txt.gz 2007-09-15 14:46 16K
chrM_chainMm9Link.sql 2007-09-15 14:46 1.4K
chrM_chainMm9.txt.gz 2007-09-15 14:46 2.1K
chrM_chainMm9.sql 2007-09-15 14:46 1.6K
chrM_chainGasAcu1Link.txt.gz 2007-04-11 09:29 550
chrM_chainGasAcu1Link.sql 2007-04-11 09:29 1.4K
chrM_chainGasAcu1.txt.gz 2007-04-11 09:29 87
chrM_chainGasAcu1.sql 2007-04-11 09:29 1.7K
chrM_chainGalGal3Link.txt.gz 2007-04-11 09:29 3.0K
chrM_chainGalGal3Link.sql 2007-04-11 09:29 1.4K
chrM_chainGalGal3.txt.gz 2007-04-11 09:29 395
chrM_chainGalGal3.sql 2007-04-11 09:29 1.7K
chainTetNig2Link.txt.gz 2010-03-14 10:52 110M
chainTetNig2Link.sql 2010-03-14 10:51 1.5K
chainTetNig2.txt.gz 2010-03-14 10:51 12M
chainTetNig2.sql 2010-03-14 10:51 1.6K
chainHg19Link.txt.gz 2009-10-11 05:54 41M
chainHg19Link.sql 2009-10-11 05:54 1.5K
chainHg19.txt.gz 2009-10-11 05:54 7.5M
chainHg19.sql 2009-10-11 05:54 1.8K
chainDanRer7Link.txt.gz 2011-02-27 21:44 125M
chainDanRer7Link.sql 2011-02-27 21:43 1.5K
chainDanRer7.txt.gz 2011-02-27 21:43 35M
chainDanRer7.sql 2011-02-27 21:42 1.6K
blastHg18KG.txt.gz 2009-12-20 11:35 2.9M
blastHg18KG.sql 2009-12-20 11:35 2.3K
bigFiles.txt.gz 2024-04-14 03:16 33
bigFiles.sql 2024-04-14 03:16 1.4K
augustusGene.txt.gz 2015-07-26 13:30 2.5M
augustusGene.sql 2015-07-26 13:30 1.9K
all_mrna.txt.gz 2020-05-08 00:35 77K
all_mrna.sql 2020-05-08 00:35 2.1K
all_est.txt.gz 2019-03-17 09:24 14M
all_est.sql 2019-03-17 09:24 2.1K