This directory contains a dump of the UCSC genome annotation database for
the Oct. 2004 assembly of the fugu genome (fr2, JGI V4.0).
The annotations were generated by UCSC and collaborators worldwide.

This assembly was produced by the US DOE Joint Genome Institute (JGI).
For more information on the fugu genome, see the project website:
	http://genome.jgi-psf.org/Takru4/Takru4.info.html
	http://www.fugu-sg.org/

Files included in this directory (updated nightly):

  - *.sql files:  the MySQL commands used to create the tables

  - *.txt.gz files: the database tables in a tab-delimited format
    compressed with gzip.

To see descriptions of the tables underlying Genome Browser annotation
tracks, select the table in the Table Browser:
  http://genome.ucsc.edu/cgi-bin/hgTables?db=fr2
and click the "describe table schema" button.  There is also a "view
table schema" link on the configuration page for each track.

---------------------------------------------------------------
If you plan to download a large file or multiple files from this 
directory, we recommend you use ftp rather than downloading the files 
via our website. To do so, ftp to hgdownload.cse.ucsc.edu, then go to 
the directory goldenPath/fr2/database/. To download multiple 
files, use the "mget" command:

    mget <filename1> <filename2> ...
    - or -
    mget -a (to download all the files in the directory) 

1.  These data have been freely provided by the JGI for use in the
	UCSC Genome Browser.
      Name                          Last modified      Size  Description
Parent Directory - bigFiles.txt.gz 2024-03-24 03:21 33 chrM_gap.txt.gz 2007-04-11 09:29 33 chrM_gold.txt.gz 2007-04-11 09:29 34 chrM_mrna.txt.gz 2016-07-03 06:35 34 chrM_intronEst.txt.gz 2016-07-03 06:35 39 chromAlias.txt.gz 2018-08-05 06:34 51 chromInfo.txt.gz 2007-04-11 11:55 78 chrM_chainGasAcu1.txt.gz 2007-04-11 09:29 87 chrM_rmsk.txt.gz 2007-04-11 09:29 97 extFile.txt.gz 2007-04-11 11:56 102 grp.txt.gz 2014-03-02 03:40 208 chrM_chainGalGal3.txt.gz 2007-04-11 09:29 395 chrM_chainGasAcu1Link.txt.gz 2007-04-11 09:29 550 hgFindSpec_pushedout.txt.gz 2021-12-27 12:22 710 hgFindSpec.txt.gz 2023-03-28 13:49 749 history.txt.gz 2010-07-04 15:43 781 chrM_chainOryLat2.txt.gz 2008-11-16 08:34 803 chromInfo.sql 2007-04-11 11:55 1.2K extFile.sql 2007-04-11 11:56 1.3K windowmaskerSdust.sql 2007-04-11 12:02 1.3K ensPep.sql 2018-08-05 06:34 1.3K ensemblSource.sql 2018-08-05 06:34 1.3K bigFiles.sql 2024-03-24 03:21 1.4K grp.sql 2014-03-02 03:40 1.4K ensemblToGeneName.sql 2018-08-05 06:34 1.4K chrM_chainMm9Link.sql 2007-09-15 14:46 1.4K chrUn_chainMm9Link.sql 2007-09-15 14:46 1.4K multiz5way.sql 2007-04-11 11:58 1.4K ensGtp.sql 2018-08-05 06:34 1.4K chrM_chainGalGal3Link.sql 2007-04-11 09:29 1.4K chrM_chainGasAcu1Link.sql 2007-04-11 09:29 1.4K chrM_chainOryLat2Link.sql 2008-11-16 08:34 1.4K chromAlias.sql 2018-08-05 06:34 1.4K chrUn_chainGalGal3Link.sql 2007-04-11 11:45 1.4K chrUn_chainGasAcu1Link.sql 2007-04-11 11:45 1.4K chrUn_chainOryLat2Link.sql 2008-11-16 08:34 1.4K tableDescriptions.sql 2024-03-23 02:03 1.4K phastConsElements5way.sql 2007-04-11 12:02 1.4K multiz5waySummary.sql 2007-04-11 11:59 1.5K chainDanRer7Link.sql 2011-02-27 21:43 1.5K chainTetNig2Link.sql 2010-03-14 10:51 1.5K microsat.sql 2015-08-23 16:31 1.5K chrM_gap.sql 2007-04-11 09:29 1.5K chrUn_gap.sql 2007-04-11 11:55 1.5K chainHg19Link.sql 2009-10-11 05:54 1.5K history.sql 2010-07-04 15:43 1.5K multiz5wayFrames.sql 2007-04-11 11:58 1.6K tableList.sql 2024-03-24 03:21 1.6K chrM_gold.sql 2007-04-11 09:29 1.6K chrUn_gold.sql 2007-04-11 11:55 1.6K gbLoaded.sql 2020-08-21 19:31 1.6K chainDanRer7.sql 2011-02-27 21:42 1.6K chainTetNig2.sql 2010-03-14 10:51 1.6K chrM_chainMm9.sql 2007-09-15 14:46 1.6K chrUn_chainMm9.sql 2007-09-15 14:46 1.6K chrM_chainGalGal3.sql 2007-04-11 09:29 1.7K chrM_chainGasAcu1.sql 2007-04-11 09:29 1.7K chrM_chainOryLat2.sql 2008-11-16 08:34 1.7K chrUn_chainGalGal3.sql 2007-04-11 11:45 1.7K chrUn_chainGasAcu1.sql 2007-04-11 11:45 1.7K chrUn_chainOryLat2.sql 2008-11-16 08:33 1.7K tRNAs.sql 2012-04-15 21:41 1.7K gc5Base.sql 2007-04-11 11:57 1.7K phastCons5.sql 2007-04-11 12:01 1.7K hgFindSpec.sql 2023-03-28 13:49 1.8K estOrientInfo.sql 2019-03-17 09:24 1.8K chainHg19.sql 2009-10-11 05:54 1.8K hgFindSpec_pushedout.sql 2021-12-27 12:22 1.8K mrnaOrientInfo.sql 2020-05-08 00:49 1.8K chrM_rmsk.sql 2007-04-11 09:29 1.8K chrUn_rmsk.sql 2007-04-11 11:55 1.8K ensGene.sql 2018-08-05 06:34 1.9K augustusGene.sql 2015-07-26 13:30 1.9K simpleRepeat.sql 2007-04-11 12:02 2.0K netDanRer7.sql 2011-02-27 21:42 2.0K netTetNig2.sql 2010-03-14 10:52 2.0K trackDb.sql 2023-03-28 13:49 2.1K chrM_chainMm9.txt.gz 2007-09-15 14:46 2.1K trackDb_pushedout.sql 2021-12-27 12:22 2.1K chrM_est.sql 2019-03-17 09:24 2.1K chrM_mrna.sql 2016-07-03 06:35 2.1K chrUn_est.sql 2019-03-17 09:24 2.1K all_est.sql 2019-03-17 09:24 2.1K chrM_intronEst.sql 2016-07-03 06:35 2.1K chrUn_intronEst.sql 2019-03-17 09:24 2.1K chrUn_mrna.sql 2020-05-08 00:49 2.1K all_mrna.sql 2020-05-08 00:35 2.1K xenoMrna.sql 2020-08-21 19:09 2.1K netMm9.sql 2007-09-15 14:47 2.2K netGalGal3.sql 2007-04-11 11:59 2.2K netGasAcu1.sql 2007-04-11 11:59 2.2K netOryLat2.sql 2008-11-16 08:34 2.2K blastHg18KG.sql 2009-12-20 11:35 2.3K netHg19.sql 2009-10-11 05:54 2.3K chrM_chainOryLat2Link.txt.gz 2008-11-16 08:34 2.6K chrM_chainGalGal3Link.txt.gz 2007-04-11 09:29 3.0K tableList.txt.gz 2024-03-24 03:21 4.4K tableDescriptions.txt.gz 2024-03-23 02:03 5.9K chrM_chainMm9Link.txt.gz 2007-09-15 14:46 16K tRNAs.txt.gz 2012-04-15 21:41 18K mrnaOrientInfo.txt.gz 2020-05-08 00:49 18K trackDb_pushedout.txt.gz 2021-12-27 12:22 28K trackDb.txt.gz 2023-03-28 13:49 29K gbLoaded.txt.gz 2020-08-21 19:31 34K all_mrna.txt.gz 2020-05-08 00:35 77K chrUn_mrna.txt.gz 2020-05-08 00:49 77K chrUn_gap.txt.gz 2007-04-11 11:55 85K ensemblSource.txt.gz 2018-08-05 06:34 119K chrUn_gold.txt.gz 2007-04-11 11:55 125K microsat.txt.gz 2015-08-23 16:31 166K ensemblToGeneName.txt.gz 2018-08-05 06:34 190K chrM_est.txt.gz 2019-03-17 09:24 283K ensGtp.txt.gz 2018-08-05 06:34 392K gc5Base.txt.gz 2007-04-11 11:57 1.6M chrUn_chainGalGal3.txt.gz 2007-04-11 11:45 1.8M multiz5waySummary.txt.gz 2007-04-11 11:59 1.9M augustusGene.txt.gz 2015-07-26 13:30 2.5M simpleRepeat.txt.gz 2007-04-11 12:02 2.7M blastHg18KG.txt.gz 2009-12-20 11:35 2.9M estOrientInfo.txt.gz 2019-03-17 09:24 3.2M ensGene.txt.gz 2018-08-05 06:34 3.2M netGalGal3.txt.gz 2007-04-11 11:59 3.9M chrUn_chainMm9.txt.gz 2007-09-15 14:46 4.7M chrUn_rmsk.txt.gz 2007-04-11 11:55 4.7M netMm9.txt.gz 2007-09-15 14:47 4.9M netHg19.txt.gz 2009-10-11 05:54 5.1M ensPep.txt.gz 2018-08-05 06:34 7.3M chainHg19.txt.gz 2009-10-11 05:54 7.5M chrUn_intronEst.txt.gz 2019-03-17 09:24 8.1M netDanRer7.txt.gz 2011-02-27 21:42 8.5M phastConsElements5way.txt.gz 2007-04-11 12:02 10M phastCons5.txt.gz 2007-04-11 12:02 10M netGasAcu1.txt.gz 2007-04-11 12:00 11M chrUn_chainGasAcu1.txt.gz 2007-04-11 11:45 11M multiz5wayFrames.txt.gz 2007-04-11 11:59 11M windowmaskerSdust.txt.gz 2007-04-11 12:02 12M chainTetNig2.txt.gz 2010-03-14 10:51 12M netOryLat2.txt.gz 2008-11-16 08:34 12M chrUn_est.txt.gz 2019-03-17 09:24 13M all_est.txt.gz 2019-03-17 09:24 14M chrUn_chainGalGal3Link.txt.gz 2007-04-11 11:45 15M netTetNig2.txt.gz 2010-03-14 10:52 16M multiz5way.txt.gz 2007-04-11 11:58 20M chrUn_chainMm9Link.txt.gz 2007-09-15 14:46 30M chrUn_chainOryLat2.txt.gz 2008-11-16 08:33 32M chainDanRer7.txt.gz 2011-02-27 21:43 35M chainHg19Link.txt.gz 2009-10-11 05:54 41M chrUn_chainGasAcu1Link.txt.gz 2007-04-11 11:47 105M chainTetNig2Link.txt.gz 2010-03-14 10:52 110M chainDanRer7Link.txt.gz 2011-02-27 21:44 125M chrUn_chainOryLat2Link.txt.gz 2008-11-16 08:35 192M xenoMrna.txt.gz 2020-08-21 19:09 231M