This directory contains a dump of the UCSC genome annotation database for
the Oct. 2004 assembly of the fugu genome (fr2, JGI V4.0).
The annotations were generated by UCSC and collaborators worldwide.
This assembly was produced by the US DOE Joint Genome Institute (JGI).
For more information on the fugu genome, see the project website:
http://genome.jgi-psf.org/Takru4/Takru4.info.html
http://www.fugu-sg.org/
Files included in this directory (updated nightly):
- *.sql files: the MySQL commands used to create the tables
- *.txt.gz files: the database tables in a tab-delimited format
compressed with gzip.
To see descriptions of the tables underlying Genome Browser annotation
tracks, select the table in the Table Browser:
http://genome.ucsc.edu/cgi-bin/hgTables?db=fr2
and click the "describe table schema" button. There is also a "view
table schema" link on the configuration page for each track.
---------------------------------------------------------------
If you plan to download a large file or multiple files from this
directory, we recommend you use ftp rather than downloading the files
via our website. To do so, ftp to hgdownload.cse.ucsc.edu, then go to
the directory goldenPath/fr2/database/. To download multiple
files, use the "mget" command:
mget <filename1> <filename2> ...
- or -
mget -a (to download all the files in the directory)
1. These data have been freely provided by the JGI for use in the
UCSC Genome Browser.
Name Last modified Size Description
Parent Directory -
chrM_chainGalGal3.sql 2007-04-11 09:29 1.7K
chrM_chainGalGal3.txt.gz 2007-04-11 09:29 395
chrM_chainGalGal3Link.sql 2007-04-11 09:29 1.4K
chrM_chainGalGal3Link.txt.gz 2007-04-11 09:29 3.0K
chrM_chainGasAcu1.sql 2007-04-11 09:29 1.7K
chrM_chainGasAcu1.txt.gz 2007-04-11 09:29 87
chrM_chainGasAcu1Link.sql 2007-04-11 09:29 1.4K
chrM_chainGasAcu1Link.txt.gz 2007-04-11 09:29 550
chrM_gap.sql 2007-04-11 09:29 1.5K
chrM_gap.txt.gz 2007-04-11 09:29 33
chrM_gold.sql 2007-04-11 09:29 1.6K
chrM_gold.txt.gz 2007-04-11 09:29 34
chrM_rmsk.sql 2007-04-11 09:29 1.8K
chrM_rmsk.txt.gz 2007-04-11 09:29 97
chrUn_chainGalGal3.sql 2007-04-11 11:45 1.7K
chrUn_chainGalGal3.txt.gz 2007-04-11 11:45 1.8M
chrUn_chainGalGal3Link.sql 2007-04-11 11:45 1.4K
chrUn_chainGalGal3Link.txt.gz 2007-04-11 11:45 15M
chrUn_chainGasAcu1.sql 2007-04-11 11:45 1.7K
chrUn_chainGasAcu1.txt.gz 2007-04-11 11:45 11M
chrUn_chainGasAcu1Link.sql 2007-04-11 11:45 1.4K
chrUn_chainGasAcu1Link.txt.gz 2007-04-11 11:47 105M
chrUn_gap.sql 2007-04-11 11:55 1.5K
chrUn_gap.txt.gz 2007-04-11 11:55 85K
chrUn_gold.sql 2007-04-11 11:55 1.6K
chrUn_gold.txt.gz 2007-04-11 11:55 125K
chrUn_rmsk.sql 2007-04-11 11:55 1.8K
chrUn_rmsk.txt.gz 2007-04-11 11:55 4.7M
chromInfo.sql 2007-04-11 11:55 1.2K
chromInfo.txt.gz 2007-04-11 11:55 78
extFile.sql 2007-04-11 11:56 1.3K
extFile.txt.gz 2007-04-11 11:56 102
gc5Base.sql 2007-04-11 11:57 1.7K
gc5Base.txt.gz 2007-04-11 11:57 1.6M
multiz5way.sql 2007-04-11 11:58 1.4K
multiz5way.txt.gz 2007-04-11 11:58 20M
multiz5wayFrames.sql 2007-04-11 11:58 1.6K
multiz5wayFrames.txt.gz 2007-04-11 11:59 11M
multiz5waySummary.sql 2007-04-11 11:59 1.5K
multiz5waySummary.txt.gz 2007-04-11 11:59 1.9M
netGalGal3.sql 2007-04-11 11:59 2.2K
netGalGal3.txt.gz 2007-04-11 11:59 3.9M
netGasAcu1.sql 2007-04-11 11:59 2.2K
netGasAcu1.txt.gz 2007-04-11 12:00 11M
phastCons5.sql 2007-04-11 12:01 1.7K
phastCons5.txt.gz 2007-04-11 12:02 10M
phastConsElements5way.sql 2007-04-11 12:02 1.4K
phastConsElements5way.txt.gz 2007-04-11 12:02 10M
simpleRepeat.sql 2007-04-11 12:02 2.0K
simpleRepeat.txt.gz 2007-04-11 12:02 2.7M
windowmaskerSdust.sql 2007-04-11 12:02 1.3K
windowmaskerSdust.txt.gz 2007-04-11 12:02 12M
chrM_chainMm9.sql 2007-09-15 14:46 1.6K
chrM_chainMm9.txt.gz 2007-09-15 14:46 2.1K
chrM_chainMm9Link.sql 2007-09-15 14:46 1.4K
chrM_chainMm9Link.txt.gz 2007-09-15 14:46 16K
chrUn_chainMm9.sql 2007-09-15 14:46 1.6K
chrUn_chainMm9.txt.gz 2007-09-15 14:46 4.7M
chrUn_chainMm9Link.sql 2007-09-15 14:46 1.4K
chrUn_chainMm9Link.txt.gz 2007-09-15 14:46 30M
netMm9.sql 2007-09-15 14:47 2.2K
netMm9.txt.gz 2007-09-15 14:47 4.9M
chrUn_chainOryLat2.sql 2008-11-16 08:33 1.7K
chrUn_chainOryLat2.txt.gz 2008-11-16 08:33 32M
chrM_chainOryLat2.sql 2008-11-16 08:34 1.7K
chrM_chainOryLat2.txt.gz 2008-11-16 08:34 803
chrM_chainOryLat2Link.sql 2008-11-16 08:34 1.4K
chrM_chainOryLat2Link.txt.gz 2008-11-16 08:34 2.6K
netOryLat2.sql 2008-11-16 08:34 2.2K
netOryLat2.txt.gz 2008-11-16 08:34 12M
chrUn_chainOryLat2Link.sql 2008-11-16 08:34 1.4K
chrUn_chainOryLat2Link.txt.gz 2008-11-16 08:35 192M
chainHg19.sql 2009-10-11 05:54 1.8K
chainHg19.txt.gz 2009-10-11 05:54 7.5M
netHg19.sql 2009-10-11 05:54 2.3K
netHg19.txt.gz 2009-10-11 05:54 5.1M
chainHg19Link.sql 2009-10-11 05:54 1.5K
chainHg19Link.txt.gz 2009-10-11 05:54 41M
blastHg18KG.sql 2009-12-20 11:35 2.3K
blastHg18KG.txt.gz 2009-12-20 11:35 2.9M
chainTetNig2.sql 2010-03-14 10:51 1.6K
chainTetNig2.txt.gz 2010-03-14 10:51 12M
chainTetNig2Link.sql 2010-03-14 10:51 1.5K
chainTetNig2Link.txt.gz 2010-03-14 10:52 110M
netTetNig2.sql 2010-03-14 10:52 2.0K
netTetNig2.txt.gz 2010-03-14 10:52 16M
history.sql 2010-07-04 15:43 1.5K
history.txt.gz 2010-07-04 15:43 781
netDanRer7.sql 2011-02-27 21:42 2.0K
netDanRer7.txt.gz 2011-02-27 21:42 8.5M
chainDanRer7.sql 2011-02-27 21:42 1.6K
chainDanRer7.txt.gz 2011-02-27 21:43 35M
chainDanRer7Link.sql 2011-02-27 21:43 1.5K
chainDanRer7Link.txt.gz 2011-02-27 21:44 125M
tRNAs.sql 2012-04-15 21:41 1.7K
tRNAs.txt.gz 2012-04-15 21:41 18K
grp.sql 2014-03-02 03:40 1.4K
grp.txt.gz 2014-03-02 03:40 208
augustusGene.sql 2015-07-26 13:30 1.9K
augustusGene.txt.gz 2015-07-26 13:30 2.5M
microsat.sql 2015-08-23 16:31 1.5K
microsat.txt.gz 2015-08-23 16:31 166K
chrM_intronEst.sql 2016-07-03 06:35 2.1K
chrM_intronEst.txt.gz 2016-07-03 06:35 39
chrM_mrna.sql 2016-07-03 06:35 2.1K
chrM_mrna.txt.gz 2016-07-03 06:35 34
ensPep.sql 2018-08-05 06:34 1.3K
ensPep.txt.gz 2018-08-05 06:34 7.3M
ensGene.sql 2018-08-05 06:34 1.9K
ensGene.txt.gz 2018-08-05 06:34 3.2M
ensemblSource.sql 2018-08-05 06:34 1.3K
ensemblSource.txt.gz 2018-08-05 06:34 119K
ensemblToGeneName.sql 2018-08-05 06:34 1.4K
ensemblToGeneName.txt.gz 2018-08-05 06:34 190K
chromAlias.sql 2018-08-05 06:34 1.4K
chromAlias.txt.gz 2018-08-05 06:34 51
ensGtp.sql 2018-08-05 06:34 1.4K
ensGtp.txt.gz 2018-08-05 06:34 392K
chrUn_intronEst.sql 2019-03-17 09:24 2.1K
chrUn_intronEst.txt.gz 2019-03-17 09:24 8.1M
all_est.sql 2019-03-17 09:24 2.1K
all_est.txt.gz 2019-03-17 09:24 14M
chrUn_est.sql 2019-03-17 09:24 2.1K
chrUn_est.txt.gz 2019-03-17 09:24 13M
chrM_est.sql 2019-03-17 09:24 2.1K
chrM_est.txt.gz 2019-03-17 09:24 283K
estOrientInfo.sql 2019-03-17 09:24 1.8K
estOrientInfo.txt.gz 2019-03-17 09:24 3.2M
all_mrna.sql 2020-05-08 00:35 2.1K
all_mrna.txt.gz 2020-05-08 00:35 77K
chrUn_mrna.sql 2020-05-08 00:49 2.1K
chrUn_mrna.txt.gz 2020-05-08 00:49 77K
mrnaOrientInfo.sql 2020-05-08 00:49 1.8K
mrnaOrientInfo.txt.gz 2020-05-08 00:49 18K
xenoMrna.sql 2020-08-21 19:09 2.1K
xenoMrna.txt.gz 2020-08-21 19:09 231M
gbLoaded.sql 2020-08-21 19:31 1.6K
gbLoaded.txt.gz 2020-08-21 19:31 34K
trackDb.sql 2023-03-28 13:49 2.1K
trackDb.txt.gz 2023-03-28 13:49 29K
hgFindSpec.sql 2023-03-28 13:49 1.8K
hgFindSpec.txt.gz 2023-03-28 13:49 749
tableDescriptions.sql 2024-12-28 02:05 1.5K
tableDescriptions.txt.gz 2024-12-28 02:05 5.9K
tableList.sql 2024-12-29 03:14 1.6K
tableList.txt.gz 2024-12-29 03:14 4.3K
bigFiles.sql 2024-12-29 03:14 1.4K
bigFiles.txt.gz 2024-12-29 03:14 33