This directory contains a dump of the UCSC genome annotation database for the
    Nov. 2017 (Felis_catus_9.0/felCat9) assembly of the cat genome
    (felCat9, Genome Sequencing Center (GSC) at Washington University (WashU) School of Medicine) .

The annotations were generated by UCSC and collaborators worldwide.

For more information about this assembly, please note the NCBI resources:
    https://www.ncbi.nlm.nih.gov/genome/78
    https://www.ncbi.nlm.nih.gov/genome/assembly/1448961
    https://www.ncbi.nlm.nih.gov/bioproject/16726

Files included in this directory (updated nightly):

  - *.sql files:  the MySQL commands used to create the tables

  - *.txt.gz files: the database tables in a tab-delimited format
    compressed with gzip.

To see descriptions of the tables underlying Genome Browser annotation
tracks, select the table in the Table Browser:
  http://genome.ucsc.edu/cgi-bin/hgTables?db=felCat9
and click the "describe table schema" button.  There is also a "view
table schema" link on the configuration page for each track.

---------------------------------------------------------------
If you plan to download a large file or multiple files from this
directory, we recommend you use ftp rather than downloading the files
via our website. To do so, ftp to hgdownload.soe.ucsc.edu, then go to
the directory goldenPath/felCat9/database/. To download multiple
files, use the "mget" command:

    mget <filename1> <filename2> ...
    - or -
    mget -a (to download all the files in the directory)

Alternate methods to ftp access.

Using an rsync command to download the entire directory:
    rsync -avzP rsync://hgdownload.soe.ucsc.edu/goldenPath/felCat9/database/ .
For a single file, e.g. gc5Base.txt.gz
    rsync -avzP 
        rsync://hgdownload.soe.ucsc.edu/goldenPath/felCat9/database/gc5Base.txt.gz .

Or with wget, all files:
    wget --timestamping 
        'ftp://hgdownload.soe.ucsc.edu/goldenPath/felCat9/database/*'
With wget, a single file:
    wget --timestamping 
        'ftp://hgdownload.soe.ucsc.edu/goldenPath/felCat9/database/gc5Base.txt.gz' 
        -O gc5Base.txt.gz

To uncompress the *.txt.gz files:
    gunzip <table>.txt.gz
The tables can be loaded directly from the .txt.gz compressed file.
It is not necessary to uncompress them to load into a database,
as shown in the example below.

To load one of the tables directly into your local mirror database,
for example the table chromInfo:
## create table from the sql definition
$ hgsql felCat9 < chromInfo.sql
## load data from the txt.gz file
$ zcat chromInfo.txt.gz | hgsql felCat9 --local-infile=1 
        -e 'LOAD DATA LOCAL INFILE "/dev/stdin" INTO TABLE chromInfo;'

The Cat sequence is made freely available to the community by the
Genome Sequencing Center, Washington University School of Medicine, with
the following understanding:

1. The data may be freely downloaded, used in analyses, and repackaged in
   databases.

2. Users are free to use the data in scientific papers analyzing these data
   if the providers of these data are properly acknowledged.  See
   http://genome.ucsc.edu/goldenPath/credits.html for credit information.

3. The centers producing the data reserve the right to publish the initial
   large-scale analyses of the data set, including large-scale identification
   of regions of evolutionary conservation and large-scale genomic assembly.
   Large-scale refers to regions with size on the order of a chromosome (that
   is, 30 Mb or more).

4. Any redistribution of the data should carry this notice.

-----------------------------------------------------------------------------
GenBank Data Usage

The GenBank database is designed to provide and encourage access within
the scientific community to the most up to date and comprehensive DNA
sequence information. Therefore, NCBI places no restrictions on the use
or distribution of the GenBank data. However, some submitters may claim
patent, copyright, or other intellectual property rights in all or a
portion of the data they have submitted. NCBI is not in a position to
assess the validity of such claims, and therefore cannot provide comment
or unrestricted permission concerning the use, copying, or distribution
of the information contained in GenBank.
-----------------------------------------------------------------------------
All the files and tables in this directory are freely usable for any purpose.

      Name                        Last modified      Size  Description
Parent Directory - gc5BaseBw.txt.gz 2019-05-06 13:00 66 ncbiRefSeqOther.txt.gz 2020-05-10 03:27 75 extNcbiRefSeq.txt.gz 2020-05-10 03:27 91 bigFiles.txt.gz 2022-08-07 03:03 95 grp.txt.gz 2019-05-06 13:06 213 history.txt.gz 2019-05-06 13:08 934 hgFindSpec.txt.gz 2022-05-06 12:33 1.2K hgFindSpec_pushedout.txt.gz 2022-04-26 10:29 1.3K gc5BaseBw.sql 2019-05-06 13:00 1.3K ncbiRefSeqOther.sql 2020-05-10 03:27 1.3K ncbiRefSeqCds.sql 2020-05-10 03:27 1.3K ensPep.sql 2021-05-25 14:34 1.3K grp.sql 2019-05-06 13:06 1.3K ncbiRefSeqPepTable.sql 2020-05-10 03:27 1.4K bigFiles.sql 2022-08-07 03:03 1.4K ensemblSource.sql 2021-05-25 14:34 1.4K chromInfo.sql 2019-05-06 13:09 1.4K ensemblToGeneName.sql 2021-05-25 14:31 1.4K chromAlias.sql 2019-05-06 13:09 1.4K tableDescriptions.sql 2021-01-14 06:34 1.4K ucscToINSDC.sql 2019-05-06 13:12 1.4K ucscToRefSeq.sql 2019-05-06 13:12 1.4K extNcbiRefSeq.sql 2020-05-10 03:27 1.4K ensGtp.sql 2021-05-25 14:31 1.4K microsat.sql 2019-05-06 13:09 1.5K windowmaskerSdust.sql 2019-05-06 13:12 1.5K cytoBandIdeo.sql 2019-05-06 12:52 1.5K chainHg38Link.sql 2019-05-06 12:54 1.5K chainMm10Link.sql 2019-05-06 13:00 1.5K seqNcbiRefSeq.sql 2020-05-10 03:27 1.5K chainSynHg38Link.sql 2019-05-06 13:06 1.5K chainSynMm10Link.sql 2019-05-06 13:08 1.5K chainRBestHg38Link.sql 2019-06-25 10:57 1.6K chainRBestMm10Link.sql 2019-06-25 10:58 1.6K tableList.sql 2022-08-07 03:03 1.6K history.sql 2019-05-06 13:08 1.6K gap.sql 2019-05-06 13:09 1.6K gold.sql 2019-05-06 13:05 1.7K genscan.sql 2019-05-06 13:03 1.7K cpgIslandExt.sql 2019-05-06 13:03 1.7K chainHg38.sql 2019-05-06 12:52 1.7K chainMm10.sql 2019-05-06 13:00 1.7K refFlat.sql 2019-05-06 13:12 1.7K chainSynHg38.sql 2019-05-06 13:06 1.7K chainSynMm10.sql 2019-05-06 13:08 1.7K cpgIslandExtUnmasked.sql 2019-05-06 13:06 1.7K chainRBestHg38.sql 2019-06-25 10:57 1.7K chainRBestMm10.sql 2019-06-25 10:58 1.7K xenoRefFlat.sql 2019-05-06 13:14 1.7K hgFindSpec.sql 2022-05-06 12:33 1.8K estOrientInfo.sql 2019-05-06 13:09 1.8K mrnaOrientInfo.sql 2019-05-06 13:09 1.8K hgFindSpec_pushedout.sql 2022-04-26 10:29 1.8K tandemDups.sql 2019-05-06 13:12 1.8K rmsk.sql 2019-05-06 13:12 1.9K refGene.sql 2019-05-06 13:12 1.9K simpleRepeat.sql 2019-05-06 13:12 1.9K ncbiRefSeq.sql 2020-05-10 03:27 1.9K nestedRepeats.sql 2019-05-06 13:09 1.9K xenoRefGene.sql 2019-05-06 13:14 1.9K augustusGene.sql 2019-05-06 12:52 1.9K ensGene.sql 2021-05-25 14:31 1.9K ncbiRefSeqCurated.sql 2020-05-10 03:27 2.0K ncbiRefSeqPredicted.sql 2020-05-10 03:27 2.0K ncbiRefSeqLink.sql 2020-05-10 03:27 2.0K trackDb.sql 2022-05-06 12:33 2.1K trackDb_pushedout.sql 2022-04-26 10:29 2.1K netHg38.sql 2019-05-06 13:09 2.1K netMm10.sql 2019-05-06 13:10 2.1K netSynHg38.sql 2019-05-06 13:11 2.1K netSynMm10.sql 2019-05-06 13:11 2.1K all_est.sql 2019-05-06 12:52 2.1K netRBestHg38.sql 2019-06-25 11:00 2.1K netRBestMm10.sql 2019-06-25 11:00 2.1K all_mrna.sql 2019-05-06 12:52 2.1K xenoMrna.sql 2019-05-06 13:13 2.1K intronEst.sql 2019-05-06 13:08 2.1K refSeqAli.sql 2019-05-06 13:12 2.1K ncbiRefSeqPsl.sql 2020-05-10 03:27 2.1K xenoRefSeqAli.sql 2019-05-06 13:14 2.1K tableList.txt.gz 2022-08-07 03:03 4.0K gap.txt.gz 2019-05-06 13:09 5.9K tableDescriptions.txt.gz 2021-01-14 06:34 6.5K estOrientInfo.txt.gz 2019-05-06 13:09 16K intronEst.txt.gz 2019-05-06 13:08 20K cytoBandIdeo.txt.gz 2019-05-06 12:52 24K chromInfo.txt.gz 2019-05-06 13:09 25K refFlat.txt.gz 2019-05-06 13:12 34K ncbiRefSeqCurated.txt.gz 2020-05-10 03:27 35K refGene.txt.gz 2019-05-06 13:12 36K ucscToRefSeq.txt.gz 2019-05-06 13:12 37K refSeqAli.txt.gz 2019-05-06 13:12 38K ucscToINSDC.txt.gz 2019-05-06 13:12 41K all_est.txt.gz 2019-05-06 12:52 43K mrnaOrientInfo.txt.gz 2019-05-06 13:09 48K trackDb.txt.gz 2022-05-06 12:33 50K trackDb_pushedout.txt.gz 2022-04-26 10:29 50K chromAlias.txt.gz 2019-05-06 13:09 52K gold.txt.gz 2019-05-06 13:05 65K ensemblSource.txt.gz 2021-05-25 14:34 173K all_mrna.txt.gz 2019-05-06 12:52 215K ensemblToGeneName.txt.gz 2021-05-25 14:31 250K chainSynMm10.txt.gz 2019-05-06 13:08 259K ncbiRefSeqCds.txt.gz 2020-05-10 03:27 379K ensGtp.txt.gz 2021-05-25 14:31 550K chainSynHg38.txt.gz 2019-05-06 13:06 562K chainRBestMm10.txt.gz 2019-06-25 10:58 869K microsat.txt.gz 2019-05-06 13:09 1.0M seqNcbiRefSeq.txt.gz 2020-05-10 03:27 1.1M cpgIslandExt.txt.gz 2019-05-06 13:03 1.3M chainRBestHg38.txt.gz 2019-06-25 10:57 1.3M cpgIslandExtUnmasked.txt.gz 2019-05-06 13:06 1.4M ncbiRefSeqLink.txt.gz 2020-05-10 03:27 1.9M augustusGene.txt.gz 2019-05-06 12:52 2.4M ensGene.txt.gz 2021-05-25 14:31 3.2M genscan.txt.gz 2019-05-06 13:03 3.3M ncbiRefSeqPredicted.txt.gz 2020-05-10 03:27 3.6M ncbiRefSeq.txt.gz 2020-05-10 03:27 3.7M ncbiRefSeqPsl.txt.gz 2020-05-10 03:27 5.0M ncbiRefSeqPepTable.txt.gz 2020-05-10 03:27 11M ensPep.txt.gz 2021-05-25 14:34 14M nestedRepeats.txt.gz 2019-05-06 13:09 15M tandemDups.txt.gz 2019-05-06 13:12 16M xenoRefSeqAli.txt.gz 2019-05-06 13:15 22M xenoRefFlat.txt.gz 2019-05-06 13:14 23M simpleRepeat.txt.gz 2019-05-06 13:12 24M xenoRefGene.txt.gz 2019-05-06 13:14 25M chainMm10.txt.gz 2019-05-06 13:00 59M netSynMm10.txt.gz 2019-05-06 13:11 60M netRBestMm10.txt.gz 2019-06-25 11:00 62M netSynHg38.txt.gz 2019-05-06 13:11 62M netMm10.txt.gz 2019-05-06 13:10 62M netRBestHg38.txt.gz 2019-06-25 11:00 66M netHg38.txt.gz 2019-05-06 13:09 66M windowmaskerSdust.txt.gz 2019-05-06 13:13 128M rmsk.txt.gz 2019-05-06 13:12 129M xenoMrna.txt.gz 2019-05-06 13:13 225M chainSynMm10Link.txt.gz 2019-05-06 13:08 232M chainRBestMm10Link.txt.gz 2019-06-25 10:59 234M chainSynHg38Link.txt.gz 2019-05-06 13:06 328M chainRBestHg38Link.txt.gz 2019-06-25 10:57 329M chainHg38.txt.gz 2019-05-06 12:53 376M chainMm10Link.txt.gz 2019-05-06 13:01 461M chainHg38Link.txt.gz 2019-05-06 12:55 1.3G