This directory contains the Dec. 2008 (NHGRI/GTB V17e/felCat4) assembly of the cat genome
(catChrV17e, NHGRI/Genome Technology Branch (NCBI project 10703, accession ACBE0100000)), as well as repeat annotations and GenBank sequences.
This assembly was produced by the Agencourt Bioscience Corporation and
Hill's Pet Nutrition, Inc.. The mitochondrial genome was sequenced by
Laboratory of Genomic Diversity.
For more information on the cat genome, see the project website:
http://www.ncbi.nlm.nih.gov/sites/entrez?Db=genomeprj&cmd=ShowDetailView&TermToSearch=10703
http://www.beckmangenomics.com/
http://www.hillspet.com/
http://home.ncifcrf.gov/ccr/lgd/comparative_genome/catgenome/index_n.asp
Files included in this directory (updated nightly):
- *.sql files: the MySQL commands used to create the tables
- *.txt.gz files: the database tables in a tab-delimited format
compressed with gzip.
To see descriptions of the tables underlying Genome Browser annotation
tracks, select the table in the Table Browser:
http://genome.ucsc.edu/cgi-bin/hgTables?db=felCat4
and click the "describe table schema" button. There is also a "view
table schema" link on the configuration page for each track.
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If you plan to download a large file or multiple files from this
directory, we recommend that you use ftp rather than downloading the
files via our website. To do so, ftp to hgdownload.cse.ucsc.edu
[username: anonymous, password: your email address], then cd to the
directory goldenPath/felCat4/database/. To download multiple files, use
the "mget" command:
mget <filename1> <filename2> ...
- or -
mget -a (to download all the files in the directory)
All the files and tables in this directory are freely usable for any purpose.
Name Last modified Size Description
Parent Directory -
chainAilMel1Link.txt.gz 2010-07-30 15:06 703M
chainCanFam2Link.txt.gz 2010-07-30 14:43 691M
chainHg19Link.txt.gz 2010-07-30 14:34 427M
chainMm9Link.txt.gz 2010-07-30 15:00 317M
xenoMrna.txt.gz 2016-02-21 15:40 296M
chainMonDom5Link.txt.gz 2010-07-30 14:38 161M
chainAilMel1.txt.gz 2010-07-30 14:54 119M
rmsk.txt.gz 2010-07-30 15:15 101M
chainCanFam2.txt.gz 2010-07-30 15:13 99M
multiz6way.txt.gz 2011-08-07 08:53 88M
phyloP6way.txt.gz 2011-08-07 08:52 64M
phastCons6way.txt.gz 2011-08-07 08:54 62M
netCanFam2.txt.gz 2010-07-30 14:58 61M
netHg19.txt.gz 2010-07-30 14:56 60M
netAilMel1.txt.gz 2010-07-30 14:40 58M
netMm9.txt.gz 2010-07-30 15:13 52M
chainHg19.txt.gz 2010-07-30 14:55 39M
xenoRefGene.txt.gz 2020-08-21 18:06 36M
xenoRefSeqAli.txt.gz 2020-08-21 18:10 36M
xenoRefFlat.txt.gz 2020-08-21 18:06 33M
chainMm9.txt.gz 2010-07-30 14:53 32M
chainMonDom5.txt.gz 2010-07-30 14:57 27M
simpleRepeat.txt.gz 2010-07-30 14:53 18M
netMonDom5.txt.gz 2010-07-30 15:14 15M
gc5Base.txt.gz 2010-07-30 14:57 13M
multiz6waySummary.txt.gz 2011-08-07 08:54 12M
nestedRepeats.txt.gz 2010-07-30 15:15 11M
phastConsElements6way.txt.gz 2011-08-07 08:53 10M
gold.txt.gz 2010-10-24 14:29 9.6M
multiz6wayFrames.txt.gz 2011-08-07 08:53 9.2M
gap.txt.gz 2010-07-30 15:15 6.4M
nscanPep.txt.gz 2010-11-07 15:10 5.0M
blastHg18KG.txt.gz 2011-07-17 08:58 2.8M
augustusGene.txt.gz 2015-07-26 13:23 1.9M
nscanGene.txt.gz 2010-11-07 15:10 1.8M
cpgIslandExtUnmasked.txt.gz 2014-06-01 12:58 1.4M
cpgIslandExt.txt.gz 2010-07-30 14:52 1.2M
microsat.txt.gz 2015-08-23 16:18 956K
chromInfo.txt.gz 2010-07-30 14:53 513K
all_mrna.txt.gz 2020-08-21 18:01 229K
tRNAs.txt.gz 2012-04-23 00:03 85K
mrnaOrientInfo.txt.gz 2020-08-21 18:06 55K
gbLoaded.txt.gz 2020-08-21 18:23 43K
all_est.txt.gz 2016-05-15 08:37 40K
refSeqAli.txt.gz 2020-08-21 18:10 40K
trackDb.txt.gz 2023-03-28 13:49 38K
trackDb_pushedout.txt.gz 2021-12-27 12:20 38K
refGene.txt.gz 2020-08-21 18:06 38K
refFlat.txt.gz 2020-08-21 18:06 33K
intronEst.txt.gz 2016-05-15 08:37 18K
estOrientInfo.txt.gz 2016-05-15 08:37 14K
ctgPos2.txt.gz 2010-07-30 14:53 6.8K
tableDescriptions.txt.gz 2024-04-20 02:03 6.2K
tableList.txt.gz 2024-04-21 03:36 3.8K
xenoRefSeqAli.sql 2020-08-21 18:10 2.1K
refSeqAli.sql 2020-08-21 18:10 2.1K
all_mrna.sql 2020-08-21 18:01 2.1K
intronEst.sql 2016-05-15 08:37 2.1K
xenoMrna.sql 2016-02-21 15:39 2.1K
all_est.sql 2016-05-15 08:37 2.1K
trackDb_pushedout.sql 2021-12-27 12:20 2.1K
trackDb.sql 2023-03-28 13:49 2.1K
blastHg18KG.sql 2011-07-17 08:58 2.1K
netMonDom5.sql 2010-07-30 15:14 2.0K
netCanFam2.sql 2010-07-30 14:58 2.0K
netAilMel1.sql 2010-07-30 14:40 2.0K
netHg19.sql 2010-07-30 14:55 2.0K
netMm9.sql 2010-07-30 15:12 2.0K
xenoRefGene.sql 2020-08-21 18:06 2.0K
refGene.sql 2020-08-21 18:06 1.9K
augustusGene.sql 2015-07-26 13:23 1.9K
nestedRepeats.sql 2010-07-30 15:15 1.9K
simpleRepeat.sql 2010-07-30 14:53 1.9K
nscanGene.sql 2010-11-07 15:10 1.9K
mrnaOrientInfo.sql 2020-08-21 18:06 1.8K
rmsk.sql 2010-07-30 15:15 1.8K
hgFindSpec_pushedout.sql 2021-12-27 12:20 1.8K
estOrientInfo.sql 2016-05-15 08:37 1.8K
hgFindSpec.sql 2023-03-28 13:49 1.8K
xenoRefFlat.sql 2020-08-21 18:06 1.7K
refFlat.sql 2020-08-21 18:06 1.7K
cpgIslandExtUnmasked.sql 2014-06-01 12:58 1.7K
phastCons6way.sql 2011-08-07 08:54 1.7K
phyloP6way.sql 2011-08-07 08:52 1.7K
gc5Base.sql 2010-07-30 14:56 1.7K
tRNAs.sql 2012-04-23 00:03 1.7K
multiz6wayFrames.sql 2011-08-07 08:53 1.7K
chainMonDom5.sql 2010-07-30 14:57 1.6K
chainCanFam2.sql 2010-07-30 15:13 1.6K
chainAilMel1.sql 2010-07-30 14:54 1.6K
chainHg19.sql 2010-07-30 14:55 1.6K
chainMm9.sql 2010-07-30 14:53 1.6K
cpgIslandExt.sql 2010-07-30 14:51 1.6K
gbLoaded.sql 2020-08-21 18:23 1.6K
gold.sql 2010-10-24 14:29 1.6K
tableList.sql 2024-04-21 03:36 1.6K
gap.sql 2010-07-30 15:15 1.5K
multiz6waySummary.sql 2011-08-07 08:54 1.5K
history.sql 2010-07-30 14:57 1.5K
phastConsElements6way.sql 2011-08-07 08:53 1.5K
microsat.sql 2015-08-23 16:18 1.5K
chainMonDom5Link.sql 2010-07-30 14:38 1.5K
chainCanFam2Link.sql 2010-07-30 14:41 1.5K
chainAilMel1Link.sql 2010-07-30 15:03 1.5K
ctgPos2.sql 2010-07-30 14:53 1.5K
chainHg19Link.sql 2010-07-30 14:32 1.5K
chainMm9Link.sql 2010-07-30 14:59 1.5K
multiz6way.sql 2011-08-07 08:53 1.5K
tableDescriptions.sql 2024-04-20 02:03 1.5K
bigFiles.sql 2024-04-21 03:36 1.4K
extFile.sql 2011-08-07 08:53 1.4K
grp.sql 2014-03-02 03:40 1.3K
chromInfo.sql 2010-07-30 14:53 1.3K
nscanPep.sql 2010-11-07 15:10 1.3K
hgFindSpec.txt.gz 2023-03-28 13:49 768
hgFindSpec_pushedout.txt.gz 2021-12-27 12:20 730
history.txt.gz 2010-07-30 14:57 558
grp.txt.gz 2014-03-02 03:40 208
extFile.txt.gz 2011-08-07 08:53 80
bigFiles.txt.gz 2024-04-21 03:36 33