This directory contains the Dec. 2008 (NHGRI/GTB V17e/felCat4) assembly of the cat genome
(catChrV17e, NHGRI/Genome Technology Branch (NCBI project 10703, accession ACBE0100000)), as well as repeat annotations and GenBank sequences.

This assembly was produced by the Agencourt Bioscience Corporation and
Hill's Pet Nutrition, Inc.. The mitochondrial genome was sequenced by
Laboratory of Genomic Diversity.

For more information on the cat genome, see the project website:

http://www.ncbi.nlm.nih.gov/sites/entrez?Db=genomeprj&cmd=ShowDetailView&TermToSearch=10703
http://www.beckmangenomics.com/
http://www.hillspet.com/
http://home.ncifcrf.gov/ccr/lgd/comparative_genome/catgenome/index_n.asp

Files included in this directory (updated nightly):

  - *.sql files:  the MySQL commands used to create the tables

  - *.txt.gz files: the database tables in a tab-delimited format
    compressed with gzip.

To see descriptions of the tables underlying Genome Browser annotation
tracks, select the table in the Table Browser:
  http://genome.ucsc.edu/cgi-bin/hgTables?db=felCat4
and click the "describe table schema" button.  There is also a "view
table schema" link on the configuration page for each track.

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If you plan to download a large file or multiple files from this
directory, we recommend that you use ftp rather than downloading the
files via our website. To do so, ftp to hgdownload.cse.ucsc.edu
[username: anonymous, password: your email address], then cd to the
directory goldenPath/felCat4/database/. To download multiple files, use
the "mget" command:

    mget <filename1> <filename2> ...
    - or -
    mget -a (to download all the files in the directory)


All the files and tables in this directory are freely usable for any purpose.


      Name                         Last modified      Size  Description
Parent Directory - bigFiles.txt.gz 2024-10-06 03:36 33 extFile.txt.gz 2011-08-07 08:53 80 grp.txt.gz 2014-03-02 03:40 208 history.txt.gz 2010-07-30 14:57 558 hgFindSpec.txt.gz 2023-03-28 13:49 768 nscanPep.sql 2010-11-07 15:10 1.3K chromInfo.sql 2010-07-30 14:53 1.3K grp.sql 2014-03-02 03:40 1.3K extFile.sql 2011-08-07 08:53 1.4K bigFiles.sql 2024-10-06 03:36 1.4K tableDescriptions.sql 2024-10-05 02:03 1.5K multiz6way.sql 2011-08-07 08:53 1.5K chainMm9Link.sql 2010-07-30 14:59 1.5K chainHg19Link.sql 2010-07-30 14:32 1.5K ctgPos2.sql 2010-07-30 14:53 1.5K chainAilMel1Link.sql 2010-07-30 15:03 1.5K chainCanFam2Link.sql 2010-07-30 14:41 1.5K chainMonDom5Link.sql 2010-07-30 14:38 1.5K microsat.sql 2015-08-23 16:18 1.5K phastConsElements6way.sql 2011-08-07 08:53 1.5K history.sql 2010-07-30 14:57 1.5K multiz6waySummary.sql 2011-08-07 08:54 1.5K gap.sql 2010-07-30 15:15 1.5K tableList.sql 2024-10-06 03:36 1.6K gold.sql 2010-10-24 14:29 1.6K gbLoaded.sql 2020-08-21 18:23 1.6K cpgIslandExt.sql 2010-07-30 14:51 1.6K chainMm9.sql 2010-07-30 14:53 1.6K chainHg19.sql 2010-07-30 14:55 1.6K chainAilMel1.sql 2010-07-30 14:54 1.6K chainCanFam2.sql 2010-07-30 15:13 1.6K chainMonDom5.sql 2010-07-30 14:57 1.6K multiz6wayFrames.sql 2011-08-07 08:53 1.7K tRNAs.sql 2012-04-23 00:03 1.7K gc5Base.sql 2010-07-30 14:56 1.7K phyloP6way.sql 2011-08-07 08:52 1.7K phastCons6way.sql 2011-08-07 08:54 1.7K cpgIslandExtUnmasked.sql 2014-06-01 12:58 1.7K refFlat.sql 2020-08-21 18:06 1.7K xenoRefFlat.sql 2020-08-21 18:06 1.7K hgFindSpec.sql 2023-03-28 13:49 1.8K estOrientInfo.sql 2016-05-15 08:37 1.8K rmsk.sql 2010-07-30 15:15 1.8K mrnaOrientInfo.sql 2020-08-21 18:06 1.8K nscanGene.sql 2010-11-07 15:10 1.9K simpleRepeat.sql 2010-07-30 14:53 1.9K nestedRepeats.sql 2010-07-30 15:15 1.9K augustusGene.sql 2015-07-26 13:23 1.9K refGene.sql 2020-08-21 18:06 1.9K xenoRefGene.sql 2020-08-21 18:06 2.0K netMm9.sql 2010-07-30 15:12 2.0K netHg19.sql 2010-07-30 14:55 2.0K netAilMel1.sql 2010-07-30 14:40 2.0K netCanFam2.sql 2010-07-30 14:58 2.0K netMonDom5.sql 2010-07-30 15:14 2.0K blastHg18KG.sql 2011-07-17 08:58 2.1K trackDb.sql 2023-03-28 13:49 2.1K all_est.sql 2016-05-15 08:37 2.1K xenoMrna.sql 2016-02-21 15:39 2.1K intronEst.sql 2016-05-15 08:37 2.1K all_mrna.sql 2020-08-21 18:01 2.1K refSeqAli.sql 2020-08-21 18:10 2.1K xenoRefSeqAli.sql 2020-08-21 18:10 2.1K tableList.txt.gz 2024-10-06 03:36 3.6K tableDescriptions.txt.gz 2024-10-05 02:03 6.2K ctgPos2.txt.gz 2010-07-30 14:53 6.8K estOrientInfo.txt.gz 2016-05-15 08:37 14K intronEst.txt.gz 2016-05-15 08:37 18K refFlat.txt.gz 2020-08-21 18:06 33K refGene.txt.gz 2020-08-21 18:06 38K trackDb.txt.gz 2023-03-28 13:49 38K refSeqAli.txt.gz 2020-08-21 18:10 40K all_est.txt.gz 2016-05-15 08:37 40K gbLoaded.txt.gz 2020-08-21 18:23 43K mrnaOrientInfo.txt.gz 2020-08-21 18:06 55K tRNAs.txt.gz 2012-04-23 00:03 85K all_mrna.txt.gz 2020-08-21 18:01 229K chromInfo.txt.gz 2010-07-30 14:53 513K microsat.txt.gz 2015-08-23 16:18 956K cpgIslandExt.txt.gz 2010-07-30 14:52 1.2M cpgIslandExtUnmasked.txt.gz 2014-06-01 12:58 1.4M nscanGene.txt.gz 2010-11-07 15:10 1.8M augustusGene.txt.gz 2015-07-26 13:23 1.9M blastHg18KG.txt.gz 2011-07-17 08:58 2.8M nscanPep.txt.gz 2010-11-07 15:10 5.0M gap.txt.gz 2010-07-30 15:15 6.4M multiz6wayFrames.txt.gz 2011-08-07 08:53 9.2M gold.txt.gz 2010-10-24 14:29 9.6M phastConsElements6way.txt.gz 2011-08-07 08:53 10M nestedRepeats.txt.gz 2010-07-30 15:15 11M multiz6waySummary.txt.gz 2011-08-07 08:54 12M gc5Base.txt.gz 2010-07-30 14:57 13M netMonDom5.txt.gz 2010-07-30 15:14 15M simpleRepeat.txt.gz 2010-07-30 14:53 18M chainMonDom5.txt.gz 2010-07-30 14:57 27M chainMm9.txt.gz 2010-07-30 14:53 32M xenoRefFlat.txt.gz 2020-08-21 18:06 33M xenoRefSeqAli.txt.gz 2020-08-21 18:10 36M xenoRefGene.txt.gz 2020-08-21 18:06 36M chainHg19.txt.gz 2010-07-30 14:55 39M netMm9.txt.gz 2010-07-30 15:13 52M netAilMel1.txt.gz 2010-07-30 14:40 58M netHg19.txt.gz 2010-07-30 14:56 60M netCanFam2.txt.gz 2010-07-30 14:58 61M phastCons6way.txt.gz 2011-08-07 08:54 62M phyloP6way.txt.gz 2011-08-07 08:52 64M multiz6way.txt.gz 2011-08-07 08:53 88M chainCanFam2.txt.gz 2010-07-30 15:13 99M rmsk.txt.gz 2010-07-30 15:15 101M chainAilMel1.txt.gz 2010-07-30 14:54 119M chainMonDom5Link.txt.gz 2010-07-30 14:38 161M xenoMrna.txt.gz 2016-02-21 15:40 296M chainMm9Link.txt.gz 2010-07-30 15:00 317M chainHg19Link.txt.gz 2010-07-30 14:34 427M chainCanFam2Link.txt.gz 2010-07-30 14:43 691M chainAilMel1Link.txt.gz 2010-07-30 15:06 703M