This directory contains the Dec. 2008 (NHGRI/GTB V17e/felCat4) assembly of the cat genome
(catChrV17e, NHGRI/Genome Technology Branch (NCBI project 10703, accession ACBE0100000)), as well as repeat annotations and GenBank sequences.
This assembly was produced by the Agencourt Bioscience Corporation and
Hill's Pet Nutrition, Inc.. The mitochondrial genome was sequenced by
Laboratory of Genomic Diversity.
For more information on the cat genome, see the project website:
http://www.ncbi.nlm.nih.gov/sites/entrez?Db=genomeprj&cmd=ShowDetailView&TermToSearch=10703
http://www.beckmangenomics.com/
http://www.hillspet.com/
http://home.ncifcrf.gov/ccr/lgd/comparative_genome/catgenome/index_n.asp
Files included in this directory (updated nightly):
- *.sql files: the MySQL commands used to create the tables
- *.txt.gz files: the database tables in a tab-delimited format
compressed with gzip.
To see descriptions of the tables underlying Genome Browser annotation
tracks, select the table in the Table Browser:
http://genome.ucsc.edu/cgi-bin/hgTables?db=felCat4
and click the "describe table schema" button. There is also a "view
table schema" link on the configuration page for each track.
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If you plan to download a large file or multiple files from this
directory, we recommend that you use ftp rather than downloading the
files via our website. To do so, ftp to hgdownload.cse.ucsc.edu
[username: anonymous, password: your email address], then cd to the
directory goldenPath/felCat4/database/. To download multiple files, use
the "mget" command:
mget <filename1> <filename2> ...
- or -
mget -a (to download all the files in the directory)
All the files and tables in this directory are freely usable for any purpose.
Name Last modified Size Description
Parent Directory -
xenoRefSeqAli.txt.gz 2020-08-21 18:10 36M
xenoRefSeqAli.sql 2020-08-21 18:10 2.1K
xenoRefGene.txt.gz 2020-08-21 18:06 36M
xenoRefGene.sql 2020-08-21 18:06 2.0K
xenoRefFlat.txt.gz 2020-08-21 18:06 33M
xenoRefFlat.sql 2020-08-21 18:06 1.7K
xenoMrna.txt.gz 2016-02-21 15:40 296M
xenoMrna.sql 2016-02-21 15:39 2.1K
trackDb.txt.gz 2023-03-28 13:49 38K
trackDb.sql 2023-03-28 13:49 2.1K
tableList.txt.gz 2024-12-08 03:33 3.6K
tableList.sql 2024-12-08 03:33 1.6K
tableDescriptions.txt.gz 2024-12-07 02:03 6.2K
tableDescriptions.sql 2024-12-07 02:03 1.5K
tRNAs.txt.gz 2012-04-23 00:03 85K
tRNAs.sql 2012-04-23 00:03 1.7K
simpleRepeat.txt.gz 2010-07-30 14:53 18M
simpleRepeat.sql 2010-07-30 14:53 1.9K
rmsk.txt.gz 2010-07-30 15:15 101M
rmsk.sql 2010-07-30 15:15 1.8K
refSeqAli.txt.gz 2020-08-21 18:10 40K
refSeqAli.sql 2020-08-21 18:10 2.1K
refGene.txt.gz 2020-08-21 18:06 38K
refGene.sql 2020-08-21 18:06 1.9K
refFlat.txt.gz 2020-08-21 18:06 33K
refFlat.sql 2020-08-21 18:06 1.7K
phyloP6way.txt.gz 2011-08-07 08:52 64M
phyloP6way.sql 2011-08-07 08:52 1.7K
phastConsElements6way.txt.gz 2011-08-07 08:53 10M
phastConsElements6way.sql 2011-08-07 08:53 1.5K
phastCons6way.txt.gz 2011-08-07 08:54 62M
phastCons6way.sql 2011-08-07 08:54 1.7K
nscanPep.txt.gz 2010-11-07 15:10 5.0M
nscanPep.sql 2010-11-07 15:10 1.3K
nscanGene.txt.gz 2010-11-07 15:10 1.8M
nscanGene.sql 2010-11-07 15:10 1.9K
netMonDom5.txt.gz 2010-07-30 15:14 15M
netMonDom5.sql 2010-07-30 15:14 2.0K
netMm9.txt.gz 2010-07-30 15:13 52M
netMm9.sql 2010-07-30 15:12 2.0K
netHg19.txt.gz 2010-07-30 14:56 60M
netHg19.sql 2010-07-30 14:55 2.0K
netCanFam2.txt.gz 2010-07-30 14:58 61M
netCanFam2.sql 2010-07-30 14:58 2.0K
netAilMel1.txt.gz 2010-07-30 14:40 58M
netAilMel1.sql 2010-07-30 14:40 2.0K
nestedRepeats.txt.gz 2010-07-30 15:15 11M
nestedRepeats.sql 2010-07-30 15:15 1.9K
multiz6waySummary.txt.gz 2011-08-07 08:54 12M
multiz6waySummary.sql 2011-08-07 08:54 1.5K
multiz6wayFrames.txt.gz 2011-08-07 08:53 9.2M
multiz6wayFrames.sql 2011-08-07 08:53 1.7K
multiz6way.txt.gz 2011-08-07 08:53 88M
multiz6way.sql 2011-08-07 08:53 1.5K
mrnaOrientInfo.txt.gz 2020-08-21 18:06 55K
mrnaOrientInfo.sql 2020-08-21 18:06 1.8K
microsat.txt.gz 2015-08-23 16:18 956K
microsat.sql 2015-08-23 16:18 1.5K
intronEst.txt.gz 2016-05-15 08:37 18K
intronEst.sql 2016-05-15 08:37 2.1K
history.txt.gz 2010-07-30 14:57 558
history.sql 2010-07-30 14:57 1.5K
hgFindSpec.txt.gz 2023-03-28 13:49 768
hgFindSpec.sql 2023-03-28 13:49 1.8K
grp.txt.gz 2014-03-02 03:40 208
grp.sql 2014-03-02 03:40 1.3K
gold.txt.gz 2010-10-24 14:29 9.6M
gold.sql 2010-10-24 14:29 1.6K
gc5Base.txt.gz 2010-07-30 14:57 13M
gc5Base.sql 2010-07-30 14:56 1.7K
gbLoaded.txt.gz 2020-08-21 18:23 43K
gbLoaded.sql 2020-08-21 18:23 1.6K
gap.txt.gz 2010-07-30 15:15 6.4M
gap.sql 2010-07-30 15:15 1.5K
extFile.txt.gz 2011-08-07 08:53 80
extFile.sql 2011-08-07 08:53 1.4K
estOrientInfo.txt.gz 2016-05-15 08:37 14K
estOrientInfo.sql 2016-05-15 08:37 1.8K
ctgPos2.txt.gz 2010-07-30 14:53 6.8K
ctgPos2.sql 2010-07-30 14:53 1.5K
cpgIslandExtUnmasked.txt.gz 2014-06-01 12:58 1.4M
cpgIslandExtUnmasked.sql 2014-06-01 12:58 1.7K
cpgIslandExt.txt.gz 2010-07-30 14:52 1.2M
cpgIslandExt.sql 2010-07-30 14:51 1.6K
chromInfo.txt.gz 2010-07-30 14:53 513K
chromInfo.sql 2010-07-30 14:53 1.3K
chainMonDom5Link.txt.gz 2010-07-30 14:38 161M
chainMonDom5Link.sql 2010-07-30 14:38 1.5K
chainMonDom5.txt.gz 2010-07-30 14:57 27M
chainMonDom5.sql 2010-07-30 14:57 1.6K
chainMm9Link.txt.gz 2010-07-30 15:00 317M
chainMm9Link.sql 2010-07-30 14:59 1.5K
chainMm9.txt.gz 2010-07-30 14:53 32M
chainMm9.sql 2010-07-30 14:53 1.6K
chainHg19Link.txt.gz 2010-07-30 14:34 427M
chainHg19Link.sql 2010-07-30 14:32 1.5K
chainHg19.txt.gz 2010-07-30 14:55 39M
chainHg19.sql 2010-07-30 14:55 1.6K
chainCanFam2Link.txt.gz 2010-07-30 14:43 691M
chainCanFam2Link.sql 2010-07-30 14:41 1.5K
chainCanFam2.txt.gz 2010-07-30 15:13 99M
chainCanFam2.sql 2010-07-30 15:13 1.6K
chainAilMel1Link.txt.gz 2010-07-30 15:06 703M
chainAilMel1Link.sql 2010-07-30 15:03 1.5K
chainAilMel1.txt.gz 2010-07-30 14:54 119M
chainAilMel1.sql 2010-07-30 14:54 1.6K
blastHg18KG.txt.gz 2011-07-17 08:58 2.8M
blastHg18KG.sql 2011-07-17 08:58 2.1K
bigFiles.txt.gz 2024-12-08 03:33 33
bigFiles.sql 2024-12-08 03:33 1.4K
augustusGene.txt.gz 2015-07-26 13:23 1.9M
augustusGene.sql 2015-07-26 13:23 1.9K
all_mrna.txt.gz 2020-08-21 18:01 229K
all_mrna.sql 2020-08-21 18:01 2.1K
all_est.txt.gz 2016-05-15 08:37 40K
all_est.sql 2016-05-15 08:37 2.1K