This directory contains a dump of the UCSC genome annotation database for the Apr. 2006 assembly of the D. melanogaster genome (dm3, BDGP Release 5). The annotations were generated by UCSC and collaborators worldwide. This assembly was produced by the Berkeley Drosophila Genome Project. For more information on the D. melanogaster genome, see the release notes: http://www.fruitfly.org/sequence/release5genomic.shtml Files included in this directory (updated nightly): - *.sql files: the MySQL commands used to create the tables - *.txt.gz files: the database tables in a tab-delimited format compressed with gzip. To see descriptions of the tables underlying Genome Browser annotation tracks, select the table in the Table Browser: http://genome.ucsc.edu/cgi-bin/hgTables?db=dm3 and click the "describe table schema" button. There is also a "view table schema" link on the configuration page for each track. --------------------------------------------------------------- To download a large file or multiple files from this directory, we recommend that you use ftp rather than downloading the files via our website. To do so: ftp hgdownload.cse.ucsc.edu user name: anonymous password: <your email address> go to the directory goldenPath/dm3/database To download multiple files from the UNIX command line, use the "mget" command. mget <filename1> <filename2> ... - or - mget -a (to download all the files in the directory) Use the "prompt" command to toggle the interactive mode if you do not want to be prompted for each file that you download. All the files and tables in this directory are freely usable for any purpose.
Name Last modified Size Description
Parent Directory - affyDrosDevSignal1.sql 2010-06-28 03:59 1.7K affyDrosDevSignal1.txt.gz 2010-06-28 03:59 3.1M affyDrosDevSignal2.sql 2010-06-28 03:58 1.7K affyDrosDevSignal2.txt.gz 2010-06-28 03:58 3.1M affyDrosDevSignal3.sql 2010-06-28 03:58 1.7K affyDrosDevSignal3.txt.gz 2010-06-28 03:58 3.1M affyDrosDevSignal4.sql 2010-06-28 03:58 1.7K affyDrosDevSignal4.txt.gz 2010-06-28 03:58 3.1M affyDrosDevSignal5.sql 2010-06-28 03:58 1.7K affyDrosDevSignal5.txt.gz 2010-06-28 03:58 3.1M affyDrosDevSignal6.sql 2010-06-28 03:59 1.7K affyDrosDevSignal6.txt.gz 2010-06-28 03:59 3.1M affyDrosDevSignal7.sql 2010-06-28 03:58 1.7K affyDrosDevSignal7.txt.gz 2010-06-28 03:58 3.1M affyDrosDevSignal8.sql 2010-06-28 03:59 1.7K affyDrosDevSignal8.txt.gz 2010-06-28 03:59 3.1M affyDrosDevSignal9.sql 2010-06-28 03:58 1.7K affyDrosDevSignal9.txt.gz 2010-06-28 03:58 3.1M affyDrosDevSignal10.sql 2010-06-28 03:58 1.7K affyDrosDevSignal10.txt.gz 2010-06-28 03:58 3.1M affyDrosDevSignal11.sql 2010-06-28 03:59 1.7K affyDrosDevSignal11.txt.gz 2010-06-28 03:59 3.0M affyDrosDevSignal12.sql 2010-06-28 03:58 1.7K affyDrosDevSignal12.txt.gz 2010-06-28 03:58 3.0M affyDrosDevTransfrags1.sql 2010-06-28 03:59 1.4K affyDrosDevTransfrags1.txt.gz 2010-06-28 03:59 238K affyDrosDevTransfrags2.sql 2010-06-28 03:58 1.4K affyDrosDevTransfrags2.txt.gz 2010-06-28 03:58 264K affyDrosDevTransfrags3.sql 2010-06-28 03:58 1.4K affyDrosDevTransfrags3.txt.gz 2010-06-28 03:58 234K affyDrosDevTransfrags4.sql 2010-06-28 03:58 1.4K affyDrosDevTransfrags4.txt.gz 2010-06-28 03:58 333K affyDrosDevTransfrags5.sql 2010-06-28 03:58 1.4K affyDrosDevTransfrags5.txt.gz 2010-06-28 03:58 357K affyDrosDevTransfrags6.sql 2010-06-28 03:59 1.4K affyDrosDevTransfrags6.txt.gz 2010-06-28 03:59 400K affyDrosDevTransfrags7.sql 2010-06-28 03:59 1.4K affyDrosDevTransfrags7.txt.gz 2010-06-28 03:59 318K affyDrosDevTransfrags8.sql 2010-06-28 03:59 1.4K affyDrosDevTransfrags8.txt.gz 2010-06-28 03:59 344K affyDrosDevTransfrags9.sql 2010-06-28 03:59 1.4K affyDrosDevTransfrags9.txt.gz 2010-06-28 03:59 372K affyDrosDevTransfrags10.sql 2010-06-28 03:59 1.4K affyDrosDevTransfrags10.txt.gz 2010-06-28 03:59 288K affyDrosDevTransfrags11.sql 2010-06-28 03:59 1.4K affyDrosDevTransfrags11.txt.gz 2010-06-28 03:59 302K affyDrosDevTransfrags12.sql 2010-06-28 03:58 1.4K affyDrosDevTransfrags12.txt.gz 2010-06-28 03:58 326K all_bacends.sql 2007-07-11 09:52 2.1K all_bacends.txt.gz 2007-07-11 09:52 11M all_est.sql 2016-06-05 10:00 2.1K all_est.txt.gz 2016-06-05 10:00 27M all_mrna.sql 2020-08-18 23:28 2.1K all_mrna.txt.gz 2020-08-18 23:28 4.3M arbExpDistance.sql 2008-11-03 03:14 1.2K arbExpDistance.txt.gz 2008-11-03 03:14 39M augustusGene.sql 2015-07-26 12:07 1.9K augustusGene.txt.gz 2015-07-26 12:07 759K bacEndPairs.sql 2007-07-11 09:55 1.7K bacEndPairs.txt.gz 2007-07-11 09:55 385K bdgpExprLink.sql 2007-07-11 09:55 1.5K bdgpExprLink.txt.gz 2007-07-11 09:55 108K bdtnpBcd1Fdr1.sql 2009-07-26 06:50 1.9K bdtnpBcd1Fdr1.txt.gz 2009-07-26 06:50 42K bdtnpBcd1Fdr25.sql 2009-07-26 06:50 1.9K bdtnpBcd1Fdr25.txt.gz 2009-07-26 06:50 194K bdtnpBcd2Fdr1.sql 2009-07-26 06:50 1.9K bdtnpBcd2Fdr1.txt.gz 2009-07-26 06:50 49K bdtnpBcd2Fdr25.sql 2009-07-26 06:50 1.9K bdtnpBcd2Fdr25.txt.gz 2009-07-26 06:50 193K bdtnpCad1Fdr1.sql 2009-07-26 06:50 1.9K bdtnpCad1Fdr1.txt.gz 2009-07-26 06:50 119K bdtnpCad1Fdr25.sql 2009-07-26 06:50 1.9K bdtnpCad1Fdr25.txt.gz 2009-07-26 06:50 479K bdtnpD1Fdr1.sql 2009-07-26 06:50 1.9K bdtnpD1Fdr1.txt.gz 2009-07-26 06:50 511K bdtnpD1Fdr25.sql 2009-07-26 06:50 1.9K bdtnpD1Fdr25.txt.gz 2009-07-26 06:50 1.3M bdtnpDa2Fdr1.sql 2009-07-26 06:50 1.9K bdtnpDa2Fdr1.txt.gz 2009-07-26 06:50 439K bdtnpDa2Fdr25.sql 2009-07-26 06:50 1.9K bdtnpDa2Fdr25.txt.gz 2009-07-26 06:50 1.1M bdtnpDl3Fdr1.sql 2009-07-26 06:50 1.9K bdtnpDl3Fdr1.txt.gz 2009-07-26 06:50 884K bdtnpDl3Fdr25.sql 2009-07-26 06:50 1.9K bdtnpDl3Fdr25.txt.gz 2009-07-26 06:50 1.8M bdtnpDnaseAccS5.sql 2011-02-21 04:33 1.4K bdtnpDnaseAccS5.txt.gz 2011-02-21 04:33 178K bdtnpDnaseAccS9.sql 2011-02-21 04:33 1.4K bdtnpDnaseAccS9.txt.gz 2011-02-21 04:33 130K bdtnpDnaseAccS10.sql 2011-02-21 04:33 1.4K bdtnpDnaseAccS10.txt.gz 2011-02-21 04:33 185K bdtnpDnaseAccS11.sql 2011-02-21 04:33 1.4K bdtnpDnaseAccS11.txt.gz 2011-02-21 04:33 155K bdtnpDnaseAccS14.sql 2011-02-21 04:33 1.4K bdtnpDnaseAccS14.txt.gz 2011-02-21 04:33 179K bdtnpDnaseS5R9481.sql 2011-02-21 04:33 1.2K bdtnpDnaseS5R9481.txt.gz 2011-02-21 04:33 74 bdtnpDnaseS5R9482.sql 2011-02-21 04:33 1.2K bdtnpDnaseS5R9482.txt.gz 2011-02-21 04:33 74 bdtnpDnaseS9R9127.sql 2011-02-21 04:33 1.2K bdtnpDnaseS9R9127.txt.gz 2011-02-21 04:33 74 bdtnpDnaseS9R9128.sql 2011-02-21 04:33 1.2K bdtnpDnaseS9R9128.txt.gz 2011-02-21 04:33 74 bdtnpDnaseS10R8816.sql 2011-02-21 04:33 1.2K bdtnpDnaseS10R8816.txt.gz 2011-02-21 04:33 76 bdtnpDnaseS10R8820.sql 2011-02-21 04:33 1.2K bdtnpDnaseS10R8820.txt.gz 2011-02-21 04:33 76 bdtnpDnaseS11R9485.sql 2011-02-21 04:33 1.2K bdtnpDnaseS11R9485.txt.gz 2011-02-21 04:33 76 bdtnpDnaseS11R9486.sql 2011-02-21 04:33 1.2K bdtnpDnaseS11R9486.txt.gz 2011-02-21 04:33 76 bdtnpDnaseS14R9477.sql 2011-02-21 04:33 1.2K bdtnpDnaseS14R9477.txt.gz 2011-02-21 04:33 76 bdtnpDnaseS14R9478.sql 2011-02-21 04:33 1.2K bdtnpDnaseS14R9478.txt.gz 2011-02-21 04:33 76 bdtnpFtz3Fdr1.sql 2009-07-26 06:50 1.9K bdtnpFtz3Fdr1.txt.gz 2009-07-26 06:50 24K bdtnpFtz3Fdr25.sql 2009-07-26 06:50 1.9K bdtnpFtz3Fdr25.txt.gz 2009-07-26 06:50 200K bdtnpGt2Fdr1.sql 2009-07-26 06:50 1.9K bdtnpGt2Fdr1.txt.gz 2009-07-26 06:50 77K bdtnpGt2Fdr25.sql 2009-07-26 06:50 1.9K bdtnpGt2Fdr25.txt.gz 2009-07-26 06:50 291K bdtnpH1Fdr1.sql 2009-07-26 06:50 1.9K bdtnpH1Fdr1.txt.gz 2009-07-26 06:50 109K bdtnpH1Fdr25.sql 2009-07-26 06:50 1.9K bdtnpH1Fdr25.txt.gz 2009-07-26 06:50 351K bdtnpH2Fdr1.sql 2009-07-26 06:50 1.9K bdtnpH2Fdr1.txt.gz 2009-07-26 06:50 175K bdtnpH2Fdr25.sql 2009-07-26 06:50 1.9K bdtnpH2Fdr25.txt.gz 2009-07-26 06:50 669K bdtnpHb1Fdr1.sql 2009-07-26 06:50 1.9K bdtnpHb1Fdr1.txt.gz 2009-07-26 06:50 133K bdtnpHb1Fdr25.sql 2009-07-26 06:50 1.9K bdtnpHb1Fdr25.txt.gz 2009-07-26 06:50 325K bdtnpHb1S9Fdr1.sql 2011-02-21 04:33 1.2K bdtnpHb1S9Fdr1.txt.gz 2011-02-21 04:33 68 bdtnpHb1S9Fdr25.sql 2011-02-21 04:33 1.2K bdtnpHb1S9Fdr25.txt.gz 2011-02-21 04:33 70 bdtnpHb2Fdr1.sql 2009-07-26 06:50 1.9K bdtnpHb2Fdr1.txt.gz 2009-07-26 06:50 119K bdtnpHb2Fdr25.sql 2009-07-26 06:50 1.9K bdtnpHb2Fdr25.txt.gz 2009-07-26 06:50 390K bdtnpHb2S9Fdr1.sql 2011-02-21 04:33 1.2K bdtnpHb2S9Fdr1.txt.gz 2011-02-21 04:33 68 bdtnpHb2S9Fdr25.sql 2011-02-21 04:33 1.2K bdtnpHb2S9Fdr25.txt.gz 2011-02-21 04:33 70 bdtnpHkb1Fdr1.sql 2009-07-26 06:50 1.9K bdtnpHkb1Fdr1.txt.gz 2009-07-26 06:50 63K bdtnpHkb1Fdr25.sql 2009-07-26 06:50 1.9K bdtnpHkb1Fdr25.txt.gz 2009-07-26 06:50 368K bdtnpHkb2Fdr1.sql 2009-07-26 06:50 1.9K bdtnpHkb2Fdr1.txt.gz 2009-07-26 06:50 37K bdtnpHkb2Fdr25.sql 2009-07-26 06:50 1.9K bdtnpHkb2Fdr25.txt.gz 2009-07-26 06:50 283K bdtnpHkb3Fdr1.sql 2009-07-26 06:50 1.9K bdtnpHkb3Fdr1.txt.gz 2009-07-26 06:50 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bdtnpMed2Fdr25.sql 2009-07-26 06:50 1.9K bdtnpMed2Fdr25.txt.gz 2009-07-26 06:50 928K bdtnpMed2S10Fdr1.sql 2011-02-21 04:33 1.2K bdtnpMed2S10Fdr1.txt.gz 2011-02-21 04:33 72 bdtnpMed2S10Fdr25.sql 2011-02-21 04:33 1.2K bdtnpMed2S10Fdr25.txt.gz 2011-02-21 04:33 74 bdtnpMed2S14Fdr1.sql 2011-02-21 04:33 1.2K bdtnpMed2S14Fdr1.txt.gz 2011-02-21 04:33 72 bdtnpMed2S14Fdr25.sql 2011-02-21 04:33 1.2K bdtnpMed2S14Fdr25.txt.gz 2011-02-21 04:33 74 bdtnpPolIIFdr1.sql 2009-07-26 06:50 1.9K bdtnpPolIIFdr1.txt.gz 2009-07-26 06:50 378K bdtnpPolIIFdr25.sql 2009-07-26 06:50 1.9K bdtnpPolIIFdr25.txt.gz 2009-07-26 06:50 946K bdtnpPrd1Fdr1.sql 2009-07-26 06:50 1.9K bdtnpPrd1Fdr1.txt.gz 2009-07-26 06:50 146K bdtnpPrd1Fdr25.sql 2009-07-26 06:50 1.9K bdtnpPrd1Fdr25.txt.gz 2009-07-26 06:50 493K bdtnpPrd2Fdr1.sql 2009-07-26 06:50 1.9K bdtnpPrd2Fdr1.txt.gz 2009-07-26 06:50 85K bdtnpPrd2Fdr25.sql 2009-07-26 06:50 1.9K bdtnpPrd2Fdr25.txt.gz 2009-07-26 06:50 381K bdtnpRun1Fdr1.sql 2009-07-26 06:50 1.9K bdtnpRun1Fdr1.txt.gz 2009-07-26 06:50 56K bdtnpRun1Fdr25.sql 2009-07-26 06:50 1.9K bdtnpRun1Fdr25.txt.gz 2009-07-26 06:50 538K bdtnpRun2Fdr1.sql 2009-07-26 06:50 1.9K bdtnpRun2Fdr1.txt.gz 2009-07-26 06:50 10K bdtnpRun2Fdr25.sql 2009-07-26 06:50 1.9K bdtnpRun2Fdr25.txt.gz 2009-07-26 06:50 154K bdtnpShn2Fdr1.sql 2009-07-26 06:50 1.9K bdtnpShn2Fdr1.txt.gz 2009-07-26 06:50 21K bdtnpShn2Fdr25.sql 2009-07-26 06:50 1.9K bdtnpShn2Fdr25.txt.gz 2009-07-26 06:50 84K bdtnpShn3Fdr1.sql 2009-07-26 06:50 1.9K bdtnpShn3Fdr1.txt.gz 2009-07-26 06:50 7.5K bdtnpShn3Fdr25.sql 2009-07-26 06:50 1.9K bdtnpShn3Fdr25.txt.gz 2009-07-26 06:50 21K bdtnpSlp11Fdr1.sql 2009-07-26 06:50 1.9K bdtnpSlp11Fdr1.txt.gz 2009-07-26 06:50 75K bdtnpSlp11Fdr25.sql 2009-07-26 06:50 1.9K bdtnpSlp11Fdr25.txt.gz 2009-07-26 06:50 452K bdtnpSna1Fdr1.sql 2009-07-26 06:50 1.9K bdtnpSna1Fdr1.txt.gz 2009-07-26 06:50 36K bdtnpSna1Fdr25.sql 2009-07-26 06:50 1.9K bdtnpSna1Fdr25.txt.gz 2009-07-26 06:50 265K bdtnpSna2Fdr1.sql 2009-07-26 06:50 1.9K bdtnpSna2Fdr1.txt.gz 2009-07-26 06:50 171K bdtnpSna2Fdr25.sql 2009-07-26 06:50 1.9K bdtnpSna2Fdr25.txt.gz 2009-07-26 06:50 1.0M bdtnpTFIIB1Fdr1.sql 2009-07-26 06:50 1.9K bdtnpTFIIB1Fdr1.txt.gz 2009-07-26 06:50 123K bdtnpTFIIB1Fdr25.sql 2009-07-26 06:50 1.9K bdtnpTFIIB1Fdr25.txt.gz 2009-07-26 06:50 342K bdtnpTll1Fdr1.sql 2009-07-26 06:50 1.9K bdtnpTll1Fdr1.txt.gz 2009-07-26 06:50 28K bdtnpTll1Fdr25.sql 2009-07-26 06:50 1.9K bdtnpTll1Fdr25.txt.gz 2009-07-26 06:50 185K bdtnpTwi1Fdr1.sql 2009-07-26 06:50 1.9K bdtnpTwi1Fdr1.txt.gz 2009-07-26 06:50 528K bdtnpTwi1Fdr25.sql 2009-07-26 06:50 1.9K bdtnpTwi1Fdr25.txt.gz 2009-07-26 06:50 1.4M bdtnpTwi2Fdr1.sql 2009-07-26 06:50 1.9K bdtnpTwi2Fdr1.txt.gz 2009-07-26 06:50 582K bdtnpTwi2Fdr25.sql 2009-07-26 06:50 1.9K bdtnpTwi2Fdr25.txt.gz 2009-07-26 06:50 1.5M bdtnpZ2Fdr1.sql 2009-07-26 06:50 1.9K bdtnpZ2Fdr1.txt.gz 2009-07-26 06:50 91K bdtnpZ2Fdr25.sql 2009-07-26 06:50 1.9K bdtnpZ2Fdr25.txt.gz 2009-07-26 06:50 477K bigFiles.sql 2024-11-24 03:15 1.4K bigFiles.txt.gz 2024-11-24 03:15 209 blastHg18KG.sql 2012-07-15 08:44 2.1K blastHg18KG.txt.gz 2012-07-15 08:44 1.4M ceBlastTab.sql 2010-08-29 10:50 1.6K ceBlastTab.txt.gz 2010-08-29 10:50 116K chr2LHet_chainAnoGam1.sql 2007-07-11 09:55 1.7K chr2LHet_chainAnoGam1.txt.gz 2007-07-11 09:55 28K chr2LHet_chainAnoGam1Link.sql 2007-07-11 09:55 1.4K chr2LHet_chainAnoGam1Link.txt.gz 2007-07-11 09:55 351K chr2LHet_chainApiMel3.sql 2007-07-11 09:55 1.7K chr2LHet_chainApiMel3.txt.gz 2007-07-11 09:55 4.1K chr2LHet_chainApiMel3Link.sql 2007-07-11 09:55 1.4K chr2LHet_chainApiMel3Link.txt.gz 2007-07-11 09:55 103K chr2LHet_chainDp3.sql 2007-07-11 09:55 1.7K chr2LHet_chainDp3.txt.gz 2007-07-11 09:55 22K chr2LHet_chainDp3Link.sql 2007-07-11 09:55 1.4K chr2LHet_chainDp3Link.txt.gz 2007-07-11 09:55 196K chr2LHet_chainDroAna2.sql 2007-07-11 09:55 1.7K chr2LHet_chainDroAna2.txt.gz 2007-07-11 09:55 200K chr2LHet_chainDroAna2Link.sql 2007-07-11 09:55 1.4K chr2LHet_chainDroAna2Link.txt.gz 2007-07-11 09:55 2.2M chr2LHet_chainDroEre1.sql 2007-07-11 09:55 1.7K chr2LHet_chainDroEre1.txt.gz 2007-07-11 09:55 95K chr2LHet_chainDroEre1Link.sql 2007-07-11 09:55 1.4K chr2LHet_chainDroEre1Link.txt.gz 2007-07-11 09:55 809K chr2LHet_chainDroPer1.sql 2007-07-11 09:55 1.7K chr2LHet_chainDroPer1.txt.gz 2007-07-11 09:55 103K chr2LHet_chainDroPer1Link.sql 2007-07-11 09:55 1.4K chr2LHet_chainDroPer1Link.txt.gz 2007-07-11 09:55 1.1M chr2LHet_chainDroSec1.sql 2007-07-11 09:55 1.7K chr2LHet_chainDroSec1.txt.gz 2007-07-11 09:55 145K chr2LHet_chainDroSec1Link.sql 2007-07-11 09:55 1.4K chr2LHet_chainDroSec1Link.txt.gz 2007-07-11 09:55 756K chr2LHet_chainDroSim1.sql 2007-07-11 09:55 1.7K chr2LHet_chainDroSim1.txt.gz 2007-07-11 09:55 79K chr2LHet_chainDroSim1Link.sql 2007-07-11 09:55 1.4K chr2LHet_chainDroSim1Link.txt.gz 2007-07-11 09:55 469K chr2LHet_chainDroYak2.sql 2007-07-11 09:55 1.7K chr2LHet_chainDroYak2.txt.gz 2007-07-11 09:55 155K chr2LHet_chainDroYak2Link.sql 2007-07-11 09:55 1.4K chr2LHet_chainDroYak2Link.txt.gz 2007-07-11 09:55 1.2M chr2LHet_est.sql 2016-06-05 10:00 2.1K chr2LHet_est.txt.gz 2016-06-05 10:00 32K chr2LHet_gap.sql 2007-07-11 09:55 1.5K chr2LHet_gap.txt.gz 2007-07-11 09:55 117 chr2LHet_gold.sql 2007-07-11 09:55 1.6K chr2LHet_gold.txt.gz 2007-07-11 09:55 120 chr2LHet_intronEst.sql 2016-06-05 10:00 2.1K chr2LHet_intronEst.txt.gz 2016-06-05 10:00 5.1K chr2LHet_mrna.sql 2016-10-02 05:56 2.1K chr2LHet_mrna.txt.gz 2016-10-02 05:56 8.7K chr2LHet_rmsk.sql 2007-07-11 09:55 1.9K chr2LHet_rmsk.txt.gz 2007-07-11 09:55 9.8K chr2L_chainAnoGam1.sql 2007-07-11 09:55 1.7K chr2L_chainAnoGam1.txt.gz 2007-07-11 09:55 639K chr2L_chainAnoGam1Link.sql 2007-07-11 09:55 1.4K chr2L_chainAnoGam1Link.txt.gz 2007-07-11 09:55 4.6M chr2L_chainApiMel3.sql 2007-07-11 09:55 1.7K chr2L_chainApiMel3.txt.gz 2007-07-11 09:55 364K chr2L_chainApiMel3Link.sql 2007-07-11 09:55 1.4K chr2L_chainApiMel3Link.txt.gz 2007-07-11 09:55 2.9M chr2L_chainDp3.sql 2007-07-11 09:55 1.6K 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