This directory contains the Apr. 2006 assembly of the D. melanogaster genome (dm3, BDGP Release 5) in one gzip-compressed FASTA file per chromosome. This assembly was produced by the Berkeley Drosophila Genome Project. For more information on the D. melanogaster genome, see the release notes: http://www.fruitfly.org/sequence/release5genomic.shtml Files included in this directory: - chr*.fa.gz: compressed FASTA sequence of each chromosome. Repeats from RepeatMasker and Tandem Repeats Finder (with period of 12 or less) are shown in lower case; non-repeating sequence is shown in upper case. RepeatMasker was run with the -s (sensitive) setting. The May 17 2007 (open-3-1-8) version of RepeatMasker and library release 20061006 were used. ------------------------------------------------------------------ To download a large file or multiple files from this directory, we recommend that you use ftp rather than downloading the files via our website. To do so: ftp hgdownload.cse.ucsc.edu user name: anonymous password: <your email address> go to the directory goldenPath/dm3/chromosomes To download multiple files from the UNIX command line, use the "mget" command. mget <filename1> <filename2> ... - or - mget -a (to download all the files in the directory) Use the "prompt" command to toggle the interactive mode if you do not want to be prompted for each file that you download. All the files in this directory are freely available for public use.
Name Last modified Size Description
Parent Directory - chr2L.fa.gz 21-Jun-2007 11:05 7.0M chr2LHet.fa.gz 21-Jun-2007 11:05 93K chr2R.fa.gz 21-Jun-2007 11:05 6.5M chr2RHet.fa.gz 21-Jun-2007 11:05 838K chr3L.fa.gz 21-Jun-2007 11:05 7.5M chr3LHet.fa.gz 21-Jun-2007 11:05 747K chr3R.fa.gz 21-Jun-2007 11:05 8.5M chr3RHet.fa.gz 21-Jun-2007 11:05 701K chr4.fa.gz 21-Jun-2007 11:05 428K chrM.fa.gz 21-Jun-2007 11:05 5.6K chrU.fa.gz 21-Jun-2007 11:05 2.4M chrUextra.fa.gz 21-Jun-2007 11:05 7.4M chrX.fa.gz 21-Jun-2007 11:05 6.8M chrXHet.fa.gz 21-Jun-2007 11:05 59K chrYHet.fa.gz 21-Jun-2007 11:05 78K md5sum.txt 21-Jun-2007 11:07 706