This directory contains a dump of the UCSC genome annotation
database for the Mar. 2005 v2.0 assembly (UCSC version ci2)
of the C. intestinalis genome from the US DOE Joint Genome
Institute (JGI).
Files included in this directory (updated nightly):
- *.sql files: the MySQL commands used to create the tables.
To see descriptions of the tables underlying Genome Browser annotation
tracks, select the table in the Table Browser:
http://genome.ucsc.edu/cgi-bin/hgTables?db=ci2
and click the "describe table schema" button. There is also a "view
table schema" link on the configuration page for each track.
- *.txt.gz files: the database tables in a tab-delimited format
compressed with gzip.
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If you plan to download a large file or multiple files from this
directory, we recommend you use ftp rather than downloading the files
via our website. To do so, ftp to hgdownload.cse.ucsc.edu, then go to
the directory goldenPath/ci2/database. To download multiple files,
use the "mget" command:
mget <filename1> <filename2> ...
- or -
mget -a (to download all the files in the directory)
All the annotations in this directory are freely available for public use.
To view restrictions on the use of the v1.0 data, see the JGI data
release policy at http://genome.jgi-psf.org/ciona4/ciona4.download.html.
Name Last modified Size Description
Parent Directory -
xenoMrna.txt.gz 2020-08-21 07:02 94M
all_est.txt.gz 2016-06-05 09:31 41M
intronEst.txt.gz 2016-06-05 09:32 27M
estOrientInfo.txt.gz 2016-06-05 09:32 11M
xenoRefSeqAli.txt.gz 2020-08-21 07:25 8.9M
xenoRefGene.txt.gz 2020-08-21 07:25 8.6M
xenoRefFlat.txt.gz 2020-08-21 07:25 7.8M
rmsk.txt.gz 2005-09-09 11:44 4.1M
ensPep.txt.gz 2011-03-14 10:15 3.6M
locusName.txt.gz 2016-10-30 06:26 1.6M
ensGene.txt.gz 2011-03-14 10:18 1.3M
simpleRepeat.txt.gz 2005-09-09 11:44 1.2M
gc5Base.txt.gz 2005-09-09 11:44 710K
all_mrna.txt.gz 2020-08-21 07:02 666K
crisprRanges.txt.gz 2016-10-30 06:26 367K
gap.txt.gz 2005-09-09 11:42 275K
ensGtp.txt.gz 2011-11-13 15:35 188K
mrnaOrientInfo.txt.gz 2020-08-21 07:02 147K
gbDelete_tmp.txt.gz 2005-09-27 05:01 139K
ensemblToGeneName.txt.gz 2011-11-13 15:37 121K
gbLoaded.txt.gz 2020-08-21 07:25 111K
refSeqAli.txt.gz 2019-07-28 04:39 101K
refGene.txt.gz 2020-08-21 07:18 94K
refFlat.txt.gz 2020-08-21 07:18 86K
pubsBingBlat.txt.gz 2014-01-26 09:59 67K
ensemblSource.txt.gz 2011-11-13 15:39 64K
pubsBlatPsl.txt.gz 2012-05-07 12:56 38K
pubsBingBlatPsl.txt.gz 2014-01-26 09:59 37K
chromInfo.txt.gz 2005-09-09 11:38 35K
pubsBlat.txt.gz 2012-05-07 12:56 26K
trackDb.txt.gz 2023-03-28 13:47 19K
trackDb_pushedout.txt.gz 2021-12-27 12:21 19K
tableDescriptions.txt.gz 2024-04-27 02:03 5.3K
tableList.txt.gz 2024-04-28 03:25 2.6K
pubsBingBlat.sql 2014-01-26 09:59 2.4K
pubsBingBlatPsl.sql 2014-01-26 09:59 2.2K
xenoRefSeqAli.sql 2020-08-21 07:25 2.1K
microsat.txt.gz 2015-08-23 12:49 2.1K
xenoMrna.sql 2020-08-21 07:02 2.1K
all_mrna.sql 2020-08-21 07:02 2.1K
refSeqAli.sql 2019-07-28 04:39 2.1K
intronEst.sql 2016-06-05 09:32 2.1K
all_est.sql 2016-06-05 09:30 2.1K
pubsBlatPsl.sql 2012-05-07 12:56 2.1K
trackDb_pushedout.sql 2021-12-27 12:21 2.1K
trackDb.sql 2023-03-28 13:47 2.1K
xenoRefGene.sql 2020-08-21 07:25 1.9K
refGene.sql 2020-08-21 07:18 1.9K
pubsBlat.sql 2012-05-07 12:56 1.9K
ensGene.sql 2011-03-14 10:18 1.8K
mrnaOrientInfo.sql 2020-08-21 07:02 1.8K
hgFindSpec_pushedout.sql 2021-12-27 12:21 1.8K
estOrientInfo.sql 2016-06-05 09:32 1.8K
hgFindSpec.sql 2023-03-28 13:47 1.8K
xenoRefFlat.sql 2020-08-21 07:25 1.7K
refFlat.sql 2020-08-21 07:18 1.7K
gbLoaded.sql 2020-08-21 07:25 1.6K
tableList.sql 2024-04-28 03:25 1.6K
locusName.sql 2016-10-30 06:26 1.5K
microsat.sql 2015-08-23 12:49 1.5K
tableDescriptions.sql 2024-04-27 02:03 1.5K
crisprRanges.sql 2016-10-30 06:26 1.4K
bigFiles.sql 2024-04-28 03:25 1.4K
grp.sql 2014-03-02 03:40 1.4K
ensGtp.sql 2011-11-13 15:35 1.4K
ensemblToGeneName.sql 2011-11-13 15:37 1.3K
crisprTargets.sql 2016-10-30 06:26 1.3K
ensemblSource.sql 2011-11-13 15:39 1.3K
ensPep.sql 2011-03-14 10:15 1.3K
chromInfo.sql 2007-03-12 09:42 1.2K
simpleRepeat.sql 2013-10-01 12:48 1.1K
rmsk.sql 2013-10-01 12:48 1.0K
gc5Base.sql 2013-10-01 12:48 888
gap.sql 2013-10-01 12:48 704
hgFindSpec.txt.gz 2023-03-28 13:47 620
hgFindSpec_pushedout.txt.gz 2021-12-27 12:21 579
history.sql 2013-10-01 12:48 533
gbDelete_tmp.sql 2013-10-01 12:48 322
grp.txt.gz 2014-03-02 03:40 223
history.txt.gz 2005-09-09 11:44 194
bigFiles.txt.gz 2024-04-28 03:25 65
crisprTargets.txt.gz 2016-10-30 06:26 59