This directory contains reciprocal-best netted chains for calJac1-mm9.

 - calJac1.mm9.rbest.net.gz: calJac1-referenced recip.best net to mm9.
 - calJac1.mm9.rbest.chain.gz: chains extracted from the recip.best
   net.  These can be passed to the liftOver program to translate coords
   from calJac1 to mm9 through the recip.best net.

 - mm9.calJac1.rbest.net.gz: mm9-referenced recip.best net.
 - mm9.calJac1.rbest.chain.gz: recip.best "liftOver" chains.
 - axtRBestNet/calJac1.mm9.rbest.axt.gz: chained and netted alignments,
   i.e. the best chains in the Marmoset genome, with gaps in the best
   chains filled in by next-best chains where possible.  Only alignments
   that are reciprocal best are kept.  The axt format is
   described in http://genome.ucsc.edu/goldenPath/help/axt.html .
	     

      Name                       Last modified      Size  Description
      Parent Directory                                -   
      calJac1.mm9.rbest.net.gz   2007-12-14 15:41  129M  
      mm9.calJac1.rbest.net.gz   2007-12-14 15:35   92M  
      calJac1.mm9.rbest.chain.gz 2007-12-14 15:38   61M  
      mm9.calJac1.rbest.chain.gz 2007-12-14 15:36   61M  
      md5sum.txt                 2007-12-14 15:41  240   
      axtRBestNet/               2008-04-22 11:30    -