This directory contains reciprocal-best netted chains for calJac1-mm9. - calJac1.mm9.rbest.net.gz: calJac1-referenced recip.best net to mm9. - calJac1.mm9.rbest.chain.gz: chains extracted from the recip.best net. These can be passed to the liftOver program to translate coords from calJac1 to mm9 through the recip.best net. - mm9.calJac1.rbest.net.gz: mm9-referenced recip.best net. - mm9.calJac1.rbest.chain.gz: recip.best "liftOver" chains. - axtRBestNet/calJac1.mm9.rbest.axt.gz: chained and netted alignments, i.e. the best chains in the Marmoset genome, with gaps in the best chains filled in by next-best chains where possible. Only alignments that are reciprocal best are kept. The axt format is described in http://genome.ucsc.edu/goldenPath/help/axt.html .
Name Last modified Size Description
Parent Directory - axtRBestNet/ 2008-04-22 11:30 - calJac1.mm9.rbest.chain.gz 2007-12-14 15:38 61M calJac1.mm9.rbest.net.gz 2007-12-14 15:41 129M md5sum.txt 2007-12-14 15:41 240 mm9.calJac1.rbest.chain.gz 2007-12-14 15:36 61M mm9.calJac1.rbest.net.gz 2007-12-14 15:35 92M