This directory contains a dump of the UCSC genome annotation database for
the August 2006 assembly of the cow genome (bosTau3, Baylor Release 3.1).
The annotations were generated by UCSC and collaborators worldwide.

This assembly was produced by the Baylor College of Medicine Human Genome Sequencing Center.
For more information on the cow genome, see the project website: http://www.hgsc.bcm.tmc.edu.

Files included in this directory (updated nightly):

  - *.sql files:  the MySQL commands used to create the tables

  - *.txt.gz files: the database tables in a tab-delimited format
    compressed with gzip.

To see descriptions of the tables underlying Genome Browser annotation
tracks, select the table in the Table Browser:
  http://genome.ucsc.edu/cgi-bin/hgTables?db=bosTau3
and click the "describe table schema" button.  There is also a "view
table schema" link on the configuration page for each track.

---------------------------------------------------------------
If you plan to download a large file or multiple files from this 
directory, we recommend you use ftp rather than downloading the files 
via our website. To do so, ftp to hgdownload.cse.ucsc.edu, then go to 
the directory goldenPath/bosTau3/database/. To download multiple 
files, use the "mget" command:

    mget <filename1> <filename2> ...
    - or -
    mget -a (to download all the files in the directory) 

For conditions of use regarding the Cow genome sequence data, see
http://www.hgsc.bcm.tmc.edu/projects/conditions_for_use.html .

All the files and tables in this directory are freely usable for any purpose.

      Name                        Last modified      Size  Description
Parent Directory - chainHg18Link.txt.gz 2007-08-21 18:25 773M chainMm9Link.txt.gz 2007-10-18 17:48 509M chainRn4Link.txt.gz 2007-08-21 18:59 464M xenoMrna.txt.gz 2016-02-21 09:59 333M chainHg18.txt.gz 2007-08-21 18:15 153M rmsk.txt.gz 2007-08-21 19:17 134M chainMm9.txt.gz 2007-10-18 18:05 69M netHg18.txt.gz 2007-08-21 19:10 67M all_est.txt.gz 2016-06-05 09:03 64M chainRn4.txt.gz 2007-08-21 18:52 58M quality.txt.gz 2007-08-21 19:15 56M netMm9.txt.gz 2007-10-18 18:03 55M netRn4.txt.gz 2007-08-21 19:13 53M xenoRefGene.txt.gz 2020-08-20 22:14 38M intronEst.txt.gz 2016-06-05 09:02 37M xenoRefSeqAli.txt.gz 2020-08-20 22:20 37M xenoRefFlat.txt.gz 2020-08-20 22:14 34M estOrientInfo.txt.gz 2016-06-05 09:03 20M gc5Base.txt.gz 2007-08-21 19:08 11M genscanPep.txt.gz 2007-08-21 19:08 11M geneidPep.txt.gz 2008-04-03 03:13 8.2M simpleRepeat.txt.gz 2007-08-21 19:18 7.7M ensPep.txt.gz 2008-04-25 03:16 7.3M genscanSubopt.txt.gz 2007-08-21 19:08 6.3M blastHg18KG.txt.gz 2007-08-21 18:13 3.5M genscan.txt.gz 2007-08-21 19:08 3.2M geneid.txt.gz 2008-04-03 03:13 2.7M sgpGene.txt.gz 2007-12-23 15:48 2.6M ensGene.txt.gz 2008-04-25 03:16 2.4M augustusGene.txt.gz 2015-07-26 10:13 2.3M gold.txt.gz 2007-08-21 19:08 2.2M all_mrna.txt.gz 2020-08-20 21:54 1.6M refSeqAli.txt.gz 2020-08-20 22:20 1.5M refGene.txt.gz 2020-08-20 22:14 1.5M refFlat.txt.gz 2020-08-20 22:14 1.4M gap.txt.gz 2007-08-21 19:05 936K mgcFullMrna.txt.gz 2020-03-01 04:52 920K cpgIslandExtUnmasked.txt.gz 2014-06-01 08:25 888K mgcGenes.txt.gz 2020-03-01 04:51 815K cpgIslandExt.txt.gz 2007-08-21 19:05 801K mrnaOrientInfo.txt.gz 2020-08-20 22:14 594K ensGtp.txt.gz 2008-04-25 03:16 297K chromInfo.txt.gz 2007-08-21 19:05 64K gbLoaded.txt.gz 2020-08-20 22:20 43K trackDb.txt.gz 2021-12-27 12:20 31K snp127.txt.gz 2007-08-21 19:18 30K snpSeq.txt.gz 2007-08-21 19:18 13K snp127Exceptions.txt.gz 2007-08-21 19:18 13K tableDescriptions.txt.gz 2019-07-21 03:41 6.0K tableList.txt.gz 2022-10-02 03:10 3.7K xenoMrna.sql 2016-02-21 09:58 2.3K snp127.sql 2007-08-21 19:18 2.3K netHg18.sql 2007-08-21 19:09 2.2K netRn4.sql 2007-08-21 19:12 2.2K netMm9.sql 2007-10-18 18:01 2.2K blastHg18KG.sql 2007-08-21 18:13 2.1K xenoRefSeqAli.sql 2020-08-20 22:20 2.1K mgcFullMrna.sql 2020-03-01 04:52 2.1K refSeqAli.sql 2020-08-20 22:20 2.1K intronEst.sql 2016-06-05 09:02 2.1K all_mrna.sql 2020-08-20 21:54 2.1K all_est.sql 2016-06-05 09:03 2.1K trackDb.sql 2021-12-27 12:20 2.1K simpleRepeat.sql 2007-08-21 19:18 2.0K augustusGene.sql 2015-07-26 10:13 1.9K xenoRefGene.sql 2020-08-20 22:14 1.9K sgpGene.sql 2007-12-23 15:48 1.9K mgcGenes.sql 2020-03-01 04:51 1.9K refGene.sql 2020-08-20 22:14 1.9K ensGene.sql 2008-04-25 03:16 1.9K geneid.sql 2008-04-03 03:13 1.9K rmsk.sql 2007-08-21 19:15 1.9K mrnaOrientInfo.sql 2020-08-20 22:14 1.8K estOrientInfo.sql 2016-06-05 09:03 1.8K hgFindSpec.sql 2021-12-27 12:20 1.8K xenoRefFlat.sql 2020-08-20 22:14 1.7K quality.sql 2007-08-21 19:14 1.7K gc5Base.sql 2007-08-21 19:07 1.7K cpgIslandExtUnmasked.sql 2014-06-01 08:25 1.7K refFlat.sql 2020-08-20 22:14 1.7K chainHg18.sql 2007-08-21 18:13 1.7K chainRn4.sql 2007-08-21 18:52 1.6K chainMm9.sql 2007-10-18 18:04 1.6K cpgIslandExt.sql 2007-08-21 19:05 1.6K gold.sql 2007-08-21 19:08 1.6K genscan.sql 2007-08-21 19:08 1.6K gbLoaded.sql 2020-08-20 22:20 1.6K tableList.sql 2022-10-02 03:10 1.6K gap.sql 2007-08-21 19:05 1.5K genscanSubopt.sql 2007-08-21 19:08 1.5K chainHg18Link.sql 2007-08-21 18:16 1.4K chainRn4Link.sql 2007-08-21 18:53 1.4K chainMm9Link.sql 2007-10-18 17:36 1.4K history.sql 2007-08-21 19:08 1.4K tableDescriptions.sql 2019-07-21 03:41 1.4K grp.sql 2014-03-02 03:37 1.4K bigFiles.sql 2022-10-02 03:10 1.4K snp127Exceptions.sql 2007-08-21 19:18 1.3K ensGtp.sql 2008-04-25 03:16 1.3K extFile.sql 2007-08-21 19:05 1.3K snp127ExceptionDesc.sql 2007-08-21 19:18 1.2K chromInfo.sql 2007-08-21 19:05 1.2K snpSeq.sql 2007-08-21 19:18 1.2K genscanPep.sql 2007-08-21 19:08 1.2K geneidPep.sql 2008-04-03 03:13 1.1K ensPep.sql 2008-04-25 03:16 1.1K hgFindSpec.txt.gz 2021-12-27 12:20 1.0K history.txt.gz 2007-08-21 19:08 656 snp127ExceptionDesc.txt.gz 2007-08-21 19:18 324 grp.txt.gz 2014-03-02 03:37 208 extFile.txt.gz 2007-08-21 19:05 68 bigFiles.txt.gz 2022-10-02 03:10 33