This directory contains a dump of the UCSC genome annotation database for
the August 2006 assembly of the cow genome (bosTau3, Baylor Release 3.1).
The annotations were generated by UCSC and collaborators worldwide.

This assembly was produced by the Baylor College of Medicine Human Genome Sequencing Center.
For more information on the cow genome, see the project website: http://www.hgsc.bcm.tmc.edu.

Files included in this directory (updated nightly):

  - *.sql files:  the MySQL commands used to create the tables

  - *.txt.gz files: the database tables in a tab-delimited format
    compressed with gzip.

To see descriptions of the tables underlying Genome Browser annotation
tracks, select the table in the Table Browser:
  http://genome.ucsc.edu/cgi-bin/hgTables?db=bosTau3
and click the "describe table schema" button.  There is also a "view
table schema" link on the configuration page for each track.

---------------------------------------------------------------
If you plan to download a large file or multiple files from this 
directory, we recommend you use ftp rather than downloading the files 
via our website. To do so, ftp to hgdownload.cse.ucsc.edu, then go to 
the directory goldenPath/bosTau3/database/. To download multiple 
files, use the "mget" command:

    mget <filename1> <filename2> ...
    - or -
    mget -a (to download all the files in the directory) 

For conditions of use regarding the Cow genome sequence data, see
http://www.hgsc.bcm.tmc.edu/projects/conditions_for_use.html .

All the files and tables in this directory are freely usable for any purpose.

      Name                        Last modified      Size  Description
Parent Directory - blastHg18KG.sql 2007-08-21 18:13 2.1K blastHg18KG.txt.gz 2007-08-21 18:13 3.5M chainHg18.sql 2007-08-21 18:13 1.7K chainHg18.txt.gz 2007-08-21 18:15 153M chainHg18Link.sql 2007-08-21 18:16 1.4K chainHg18Link.txt.gz 2007-08-21 18:25 773M chainRn4.sql 2007-08-21 18:52 1.6K chainRn4.txt.gz 2007-08-21 18:52 58M chainRn4Link.sql 2007-08-21 18:53 1.4K chainRn4Link.txt.gz 2007-08-21 18:59 464M chromInfo.sql 2007-08-21 19:05 1.2K chromInfo.txt.gz 2007-08-21 19:05 64K cpgIslandExt.sql 2007-08-21 19:05 1.6K cpgIslandExt.txt.gz 2007-08-21 19:05 801K extFile.sql 2007-08-21 19:05 1.3K extFile.txt.gz 2007-08-21 19:05 68 gap.sql 2007-08-21 19:05 1.5K gap.txt.gz 2007-08-21 19:05 936K gc5Base.sql 2007-08-21 19:07 1.7K gc5Base.txt.gz 2007-08-21 19:08 11M genscan.sql 2007-08-21 19:08 1.6K genscan.txt.gz 2007-08-21 19:08 3.2M genscanPep.sql 2007-08-21 19:08 1.2K genscanPep.txt.gz 2007-08-21 19:08 11M genscanSubopt.sql 2007-08-21 19:08 1.5K genscanSubopt.txt.gz 2007-08-21 19:08 6.3M gold.sql 2007-08-21 19:08 1.6K gold.txt.gz 2007-08-21 19:08 2.2M history.sql 2007-08-21 19:08 1.4K history.txt.gz 2007-08-21 19:08 656 netHg18.sql 2007-08-21 19:09 2.2K netHg18.txt.gz 2007-08-21 19:10 67M netRn4.sql 2007-08-21 19:12 2.2K netRn4.txt.gz 2007-08-21 19:13 53M quality.sql 2007-08-21 19:14 1.7K quality.txt.gz 2007-08-21 19:15 56M rmsk.sql 2007-08-21 19:15 1.9K rmsk.txt.gz 2007-08-21 19:17 134M simpleRepeat.sql 2007-08-21 19:18 2.0K simpleRepeat.txt.gz 2007-08-21 19:18 7.7M snp127.sql 2007-08-21 19:18 2.3K snp127.txt.gz 2007-08-21 19:18 30K snp127ExceptionDesc.sql 2007-08-21 19:18 1.2K snp127ExceptionDesc.txt.gz 2007-08-21 19:18 324 snp127Exceptions.sql 2007-08-21 19:18 1.3K snp127Exceptions.txt.gz 2007-08-21 19:18 13K snpSeq.sql 2007-08-21 19:18 1.2K snpSeq.txt.gz 2007-08-21 19:18 13K chainMm9Link.sql 2007-10-18 17:36 1.4K chainMm9Link.txt.gz 2007-10-18 17:48 509M netMm9.sql 2007-10-18 18:01 2.2K netMm9.txt.gz 2007-10-18 18:03 55M chainMm9.sql 2007-10-18 18:04 1.6K chainMm9.txt.gz 2007-10-18 18:05 69M sgpGene.sql 2007-12-23 15:48 1.9K sgpGene.txt.gz 2007-12-23 15:48 2.6M geneid.sql 2008-04-03 03:13 1.9K geneid.txt.gz 2008-04-03 03:13 2.7M geneidPep.sql 2008-04-03 03:13 1.1K geneidPep.txt.gz 2008-04-03 03:13 8.2M ensGene.sql 2008-04-25 03:16 1.9K ensGene.txt.gz 2008-04-25 03:16 2.4M ensGtp.sql 2008-04-25 03:16 1.3K ensGtp.txt.gz 2008-04-25 03:16 297K ensPep.sql 2008-04-25 03:16 1.1K ensPep.txt.gz 2008-04-25 03:16 7.3M grp.sql 2014-03-02 03:37 1.4K grp.txt.gz 2014-03-02 03:37 208 cpgIslandExtUnmasked.sql 2014-06-01 08:25 1.7K cpgIslandExtUnmasked.txt.gz 2014-06-01 08:25 888K augustusGene.sql 2015-07-26 10:13 1.9K augustusGene.txt.gz 2015-07-26 10:13 2.3M xenoMrna.sql 2016-02-21 09:58 2.3K xenoMrna.txt.gz 2016-02-21 09:59 333M intronEst.sql 2016-06-05 09:02 2.1K intronEst.txt.gz 2016-06-05 09:02 37M estOrientInfo.sql 2016-06-05 09:03 1.8K estOrientInfo.txt.gz 2016-06-05 09:03 20M all_est.sql 2016-06-05 09:03 2.1K all_est.txt.gz 2016-06-05 09:03 64M tableDescriptions.sql 2019-07-21 03:41 1.4K tableDescriptions.txt.gz 2019-07-21 03:41 6.0K mgcGenes.sql 2020-03-01 04:51 1.9K mgcGenes.txt.gz 2020-03-01 04:51 815K mgcFullMrna.sql 2020-03-01 04:52 2.1K mgcFullMrna.txt.gz 2020-03-01 04:52 920K all_mrna.sql 2020-08-20 21:54 2.1K all_mrna.txt.gz 2020-08-20 21:54 1.6M mrnaOrientInfo.sql 2020-08-20 22:14 1.8K refFlat.sql 2020-08-20 22:14 1.7K refGene.sql 2020-08-20 22:14 1.9K xenoRefFlat.sql 2020-08-20 22:14 1.7K xenoRefGene.sql 2020-08-20 22:14 1.9K refGene.txt.gz 2020-08-20 22:14 1.5M refFlat.txt.gz 2020-08-20 22:14 1.4M xenoRefGene.txt.gz 2020-08-20 22:14 38M xenoRefFlat.txt.gz 2020-08-20 22:14 34M mrnaOrientInfo.txt.gz 2020-08-20 22:14 594K refSeqAli.sql 2020-08-20 22:20 2.1K refSeqAli.txt.gz 2020-08-20 22:20 1.5M xenoRefSeqAli.sql 2020-08-20 22:20 2.1K xenoRefSeqAli.txt.gz 2020-08-20 22:20 37M gbLoaded.sql 2020-08-20 22:20 1.6K gbLoaded.txt.gz 2020-08-20 22:20 43K trackDb.sql 2021-12-27 12:20 2.1K trackDb.txt.gz 2021-12-27 12:20 31K hgFindSpec.sql 2021-12-27 12:20 1.8K hgFindSpec.txt.gz 2021-12-27 12:20 1.0K tableList.sql 2022-08-14 03:10 1.6K tableList.txt.gz 2022-08-14 03:10 3.7K bigFiles.sql 2022-08-14 03:10 1.4K bigFiles.txt.gz 2022-08-14 03:10 33