This directory contains a dump of the UCSC genome annotation database for
the August 2006 assembly of the cow genome (bosTau3, Baylor Release 3.1).
The annotations were generated by UCSC and collaborators worldwide.

This assembly was produced by the Baylor College of Medicine Human Genome Sequencing Center.
For more information on the cow genome, see the project website: http://www.hgsc.bcm.tmc.edu.

Files included in this directory (updated nightly):

  - *.sql files:  the MySQL commands used to create the tables

  - *.txt.gz files: the database tables in a tab-delimited format
    compressed with gzip.

To see descriptions of the tables underlying Genome Browser annotation
tracks, select the table in the Table Browser:
  http://genome.ucsc.edu/cgi-bin/hgTables?db=bosTau3
and click the "describe table schema" button.  There is also a "view
table schema" link on the configuration page for each track.

---------------------------------------------------------------
If you plan to download a large file or multiple files from this 
directory, we recommend you use ftp rather than downloading the files 
via our website. To do so, ftp to hgdownload.cse.ucsc.edu, then go to 
the directory goldenPath/bosTau3/database/. To download multiple 
files, use the "mget" command:

    mget <filename1> <filename2> ...
    - or -
    mget -a (to download all the files in the directory) 

For conditions of use regarding the Cow genome sequence data, see
http://www.hgsc.bcm.tmc.edu/projects/conditions_for_use.html .

All the files and tables in this directory are freely usable for any purpose.

      Name                        Last modified      Size  Description
Parent Directory - xenoRefSeqAli.txt.gz 2020-08-20 22:20 37M xenoRefSeqAli.sql 2020-08-20 22:20 2.1K xenoRefGene.txt.gz 2020-08-20 22:14 38M xenoRefGene.sql 2020-08-20 22:14 1.9K xenoRefFlat.txt.gz 2020-08-20 22:14 34M xenoRefFlat.sql 2020-08-20 22:14 1.7K xenoMrna.txt.gz 2016-02-21 09:59 333M xenoMrna.sql 2016-02-21 09:58 2.3K trackDb.txt.gz 2021-12-27 12:20 31K trackDb.sql 2021-12-27 12:20 2.1K tableList.txt.gz 2022-08-14 03:10 3.7K tableList.sql 2022-08-14 03:10 1.6K tableDescriptions.txt.gz 2019-07-21 03:41 6.0K tableDescriptions.sql 2019-07-21 03:41 1.4K snpSeq.txt.gz 2007-08-21 19:18 13K snpSeq.sql 2007-08-21 19:18 1.2K snp127Exceptions.txt.gz 2007-08-21 19:18 13K snp127Exceptions.sql 2007-08-21 19:18 1.3K snp127ExceptionDesc.txt.gz 2007-08-21 19:18 324 snp127ExceptionDesc.sql 2007-08-21 19:18 1.2K snp127.txt.gz 2007-08-21 19:18 30K snp127.sql 2007-08-21 19:18 2.3K simpleRepeat.txt.gz 2007-08-21 19:18 7.7M simpleRepeat.sql 2007-08-21 19:18 2.0K sgpGene.txt.gz 2007-12-23 15:48 2.6M sgpGene.sql 2007-12-23 15:48 1.9K rmsk.txt.gz 2007-08-21 19:17 134M rmsk.sql 2007-08-21 19:15 1.9K refSeqAli.txt.gz 2020-08-20 22:20 1.5M refSeqAli.sql 2020-08-20 22:20 2.1K refGene.txt.gz 2020-08-20 22:14 1.5M refGene.sql 2020-08-20 22:14 1.9K refFlat.txt.gz 2020-08-20 22:14 1.4M refFlat.sql 2020-08-20 22:14 1.7K quality.txt.gz 2007-08-21 19:15 56M quality.sql 2007-08-21 19:14 1.7K netRn4.txt.gz 2007-08-21 19:13 53M netRn4.sql 2007-08-21 19:12 2.2K netMm9.txt.gz 2007-10-18 18:03 55M netMm9.sql 2007-10-18 18:01 2.2K netHg18.txt.gz 2007-08-21 19:10 67M netHg18.sql 2007-08-21 19:09 2.2K mrnaOrientInfo.txt.gz 2020-08-20 22:14 594K mrnaOrientInfo.sql 2020-08-20 22:14 1.8K mgcGenes.txt.gz 2020-03-01 04:51 815K mgcGenes.sql 2020-03-01 04:51 1.9K mgcFullMrna.txt.gz 2020-03-01 04:52 920K mgcFullMrna.sql 2020-03-01 04:52 2.1K intronEst.txt.gz 2016-06-05 09:02 37M intronEst.sql 2016-06-05 09:02 2.1K history.txt.gz 2007-08-21 19:08 656 history.sql 2007-08-21 19:08 1.4K hgFindSpec.txt.gz 2021-12-27 12:20 1.0K hgFindSpec.sql 2021-12-27 12:20 1.8K grp.txt.gz 2014-03-02 03:37 208 grp.sql 2014-03-02 03:37 1.4K gold.txt.gz 2007-08-21 19:08 2.2M gold.sql 2007-08-21 19:08 1.6K genscanSubopt.txt.gz 2007-08-21 19:08 6.3M genscanSubopt.sql 2007-08-21 19:08 1.5K genscanPep.txt.gz 2007-08-21 19:08 11M genscanPep.sql 2007-08-21 19:08 1.2K genscan.txt.gz 2007-08-21 19:08 3.2M genscan.sql 2007-08-21 19:08 1.6K geneidPep.txt.gz 2008-04-03 03:13 8.2M geneidPep.sql 2008-04-03 03:13 1.1K geneid.txt.gz 2008-04-03 03:13 2.7M geneid.sql 2008-04-03 03:13 1.9K gc5Base.txt.gz 2007-08-21 19:08 11M gc5Base.sql 2007-08-21 19:07 1.7K gbLoaded.txt.gz 2020-08-20 22:20 43K gbLoaded.sql 2020-08-20 22:20 1.6K gap.txt.gz 2007-08-21 19:05 936K gap.sql 2007-08-21 19:05 1.5K extFile.txt.gz 2007-08-21 19:05 68 extFile.sql 2007-08-21 19:05 1.3K estOrientInfo.txt.gz 2016-06-05 09:03 20M estOrientInfo.sql 2016-06-05 09:03 1.8K ensPep.txt.gz 2008-04-25 03:16 7.3M ensPep.sql 2008-04-25 03:16 1.1K ensGtp.txt.gz 2008-04-25 03:16 297K ensGtp.sql 2008-04-25 03:16 1.3K ensGene.txt.gz 2008-04-25 03:16 2.4M ensGene.sql 2008-04-25 03:16 1.9K cpgIslandExtUnmasked.txt.gz 2014-06-01 08:25 888K cpgIslandExtUnmasked.sql 2014-06-01 08:25 1.7K cpgIslandExt.txt.gz 2007-08-21 19:05 801K cpgIslandExt.sql 2007-08-21 19:05 1.6K chromInfo.txt.gz 2007-08-21 19:05 64K chromInfo.sql 2007-08-21 19:05 1.2K chainRn4Link.txt.gz 2007-08-21 18:59 464M chainRn4Link.sql 2007-08-21 18:53 1.4K chainRn4.txt.gz 2007-08-21 18:52 58M chainRn4.sql 2007-08-21 18:52 1.6K chainMm9Link.txt.gz 2007-10-18 17:48 509M chainMm9Link.sql 2007-10-18 17:36 1.4K chainMm9.txt.gz 2007-10-18 18:05 69M chainMm9.sql 2007-10-18 18:04 1.6K chainHg18Link.txt.gz 2007-08-21 18:25 773M chainHg18Link.sql 2007-08-21 18:16 1.4K chainHg18.txt.gz 2007-08-21 18:15 153M chainHg18.sql 2007-08-21 18:13 1.7K blastHg18KG.txt.gz 2007-08-21 18:13 3.5M blastHg18KG.sql 2007-08-21 18:13 2.1K bigFiles.txt.gz 2022-08-14 03:10 33 bigFiles.sql 2022-08-14 03:10 1.4K augustusGene.txt.gz 2015-07-26 10:13 2.3M augustusGene.sql 2015-07-26 10:13 1.9K all_mrna.txt.gz 2020-08-20 21:54 1.6M all_mrna.sql 2020-08-20 21:54 2.1K all_est.txt.gz 2016-06-05 09:03 64M all_est.sql 2016-06-05 09:03 2.1K