This directory contains a dump of the UCSC genome annotation database for
the Feb. 2007 assembly of the lizard genome (anoCar1, Broad Institute AnoCar (1.0)).
The annotations were generated by UCSC and collaborators worldwide.
This assembly was produced by the Broad Institute at MIT and Harvard.
For more information on the lizard genome, see the project website:
http://www.broad.mit.edu/models/anole/
Files included in this directory (updated nightly):
- *.sql files: the MySQL commands used to create the tables
- *.txt.gz files: the database tables in a tab-delimited format
compressed with gzip.
To see descriptions of the tables underlying Genome Browser annotation
tracks, select the table in the Table Browser:
http://genome.ucsc.edu/cgi-bin/hgTables?db=anoCar1
and click the "describe table schema" button. There is also a "view
table schema" link on the configuration page for each track.
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If you plan to download a large file or multiple files from this
directory, we recommend you use ftp rather than downloading the files
via our website. To do so, ftp to hgdownload.cse.ucsc.edu, then go to
the directory goldenPath/anoCar1/database/. To download multiple
files, use the "mget" command:
mget <filename1> <filename2> ...
- or -
mget -a (to download all the files in the directory)
Name Last modified Size Description
Parent Directory -
all_mrna.sql 2019-05-26 04:24 2.1K
all_mrna.txt.gz 2019-05-26 04:24 11K
augustusGene.sql 2015-07-26 09:51 1.9K
augustusGene.txt.gz 2015-07-26 09:51 1.9M
bigFiles.sql 2024-11-17 03:22 1.4K
bigFiles.txt.gz 2024-11-17 03:22 33
blastHg18KG.sql 2009-12-20 10:09 2.3K
blastHg18KG.txt.gz 2009-12-20 10:09 2.8M
chainGalGal3.sql 2007-05-21 14:15 1.7K
chainGalGal3.txt.gz 2007-05-21 14:15 8.3M
chainGalGal3Link.sql 2007-05-21 14:15 1.4K
chainGalGal3Link.txt.gz 2007-05-21 14:16 53M
chainGasAcu1.sql 2007-05-21 14:16 1.7K
chainGasAcu1.txt.gz 2007-05-21 14:17 12M
chainGasAcu1Link.sql 2007-05-21 14:17 1.4K
chainGasAcu1Link.txt.gz 2007-05-21 14:18 77M
chainHg19.sql 2009-10-11 04:45 1.8K
chainHg19.txt.gz 2009-10-11 04:45 58M
chainHg19Link.sql 2009-10-11 04:45 1.5K
chainHg19Link.txt.gz 2009-10-11 04:46 213M
chainMm9.sql 2007-10-18 17:36 1.6K
chainMm9.txt.gz 2007-10-18 17:36 15M
chainMm9Link.sql 2007-10-18 17:29 1.4K
chainMm9Link.txt.gz 2007-10-18 17:32 144M
chainOrnAna1.sql 2007-06-01 12:33 1.7K
chainOrnAna1.txt.gz 2007-06-01 12:33 48M
chainOrnAna1Link.sql 2007-06-01 12:34 1.4K
chainOrnAna1Link.txt.gz 2007-06-01 12:37 183M
chainXenTro2.sql 2007-05-21 14:27 1.7K
chainXenTro2.txt.gz 2007-05-21 14:28 57M
chainXenTro2Link.sql 2007-05-21 14:28 1.4K
chainXenTro2Link.txt.gz 2007-05-21 14:37 702M
chromInfo.sql 2007-05-21 14:45 1.2K
chromInfo.txt.gz 2007-05-21 14:45 39K
ensGene.sql 2010-08-29 10:49 1.9K
ensGene.txt.gz 2010-08-29 10:49 1.7M
ensGtp.sql 2010-08-29 10:49 1.4K
ensGtp.txt.gz 2010-08-29 10:49 206K
ensPep.sql 2010-08-29 10:49 1.3K
ensPep.txt.gz 2010-08-29 10:49 4.7M
gap.sql 2007-05-21 14:45 1.5K
gap.txt.gz 2007-05-21 14:45 549K
gbLoaded.sql 2020-08-20 19:42 1.6K
gbLoaded.txt.gz 2020-08-20 19:42 15K
gc5Base.sql 2007-05-21 14:46 1.7K
gc5Base.txt.gz 2007-05-21 14:46 7.0M
genscan.sql 2007-05-21 14:47 1.6K
genscan.txt.gz 2007-05-21 14:47 1.6M
genscanPep.sql 2007-05-21 14:47 1.2K
genscanPep.txt.gz 2007-05-21 14:47 5.9M
genscanSubopt.sql 2007-05-21 14:47 1.5K
genscanSubopt.txt.gz 2007-05-21 14:47 3.4M
gold.sql 2007-05-21 14:47 1.6K
gold.txt.gz 2007-05-21 14:47 796K
grp.sql 2014-03-02 03:37 1.4K
grp.txt.gz 2014-03-02 03:37 208
hgFindSpec.sql 2023-03-28 13:46 1.8K
hgFindSpec.txt.gz 2023-03-28 13:46 794
history.sql 2007-05-21 14:47 1.4K
history.txt.gz 2007-05-21 14:47 597
microsat.sql 2015-08-23 09:29 1.5K
microsat.txt.gz 2015-08-23 09:29 958K
mrnaOrientInfo.sql 2019-05-26 04:24 1.8K
mrnaOrientInfo.txt.gz 2019-05-26 04:24 3.1K
netGalGal3.sql 2007-05-21 14:47 2.2K
netGalGal3.txt.gz 2007-05-21 14:47 9.9M
netGasAcu1.sql 2007-05-21 14:47 2.2K
netGasAcu1.txt.gz 2007-05-21 14:47 6.0M
netHg19.sql 2009-10-11 04:45 2.3K
netHg19.txt.gz 2009-10-11 04:45 9.3M
netMm9.sql 2007-10-18 17:36 2.2K
netMm9.txt.gz 2007-10-18 17:36 8.6M
netOrnAna1.sql 2007-06-01 12:40 2.2K
netOrnAna1.txt.gz 2007-06-01 12:41 9.7M
netXenTro2.sql 2007-05-21 14:48 2.2K
netXenTro2.txt.gz 2007-05-21 14:48 7.7M
quality.sql 2007-05-21 14:48 1.7K
quality.txt.gz 2007-05-21 14:49 33M
rmsk.sql 2007-05-21 14:49 1.9K
rmsk.txt.gz 2007-05-21 14:49 20M
simpleRepeat.sql 2007-05-21 14:49 1.9K
simpleRepeat.txt.gz 2007-05-21 14:50 14M
tableDescriptions.sql 2024-11-16 02:03 1.5K
tableDescriptions.txt.gz 2024-11-16 02:03 5.1K
tableList.sql 2024-11-17 03:22 1.6K
tableList.txt.gz 2024-11-17 03:22 3.0K
trackDb.sql 2023-03-28 13:46 2.1K
trackDb.txt.gz 2023-03-28 13:46 21K
windowmaskerSdust.sql 2007-05-21 14:50 1.3K
windowmaskerSdust.txt.gz 2007-05-21 14:50 54M
xenoMrna.sql 2016-02-21 09:21 2.1K
xenoMrna.txt.gz 2016-02-21 09:22 226M
xenoRefFlat.sql 2020-08-20 19:42 1.7K
xenoRefFlat.txt.gz 2020-08-20 19:42 27M
xenoRefGene.sql 2020-08-20 19:42 2.0K
xenoRefGene.txt.gz 2020-08-20 19:42 30M
xenoRefSeqAli.sql 2020-08-20 19:42 2.1K
xenoRefSeqAli.txt.gz 2020-08-20 19:42 27M