This directory contains a dump of the UCSC genome annotation database for
the Sep. 2006 assembly of the S. purpuratus genome (strPur2, Baylor release 3 Spur 2.1).
The annotations were generated by UCSC and collaborators worldwide.

This assembly was produced by the Baylor College of Medicine Human Genome Sequencing Center.
For more information on the S. purpuratus genome, see the project website:
http://www.hgsc.bcm.tmc.edu/projects/seaurchin/

Files included in this directory (updated nightly):

  - *.sql files:  the MySQL commands used to create the tables

  - *.txt.gz files: the database tables in a tab-delimited format
    compressed with gzip.

To see descriptions of the tables underlying Genome Browser annotation
tracks, select the table in the Table Browser:
  http://genome.ucsc.edu/cgi-bin/hgTables?db=strPur2
and click the "describe table schema" button.  There is also a "view
table schema" link on the configuration page for each track.

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If you plan to download a large file or multiple files from this 
directory, we recommend you use ftp rather than downloading the files 
via our website. To do so, ftp to hgdownload.cse.ucsc.edu, then go to 
the directory goldenPath/strPur2/database/. To download multiple 
files, use the "mget" command:

    mget <filename1> <filename2> ...
    - or -
    mget -a (to download all the files in the directory) 

For conditions of use regarding the S. purpuratus genome sequence data, see
http://www.hgsc.bcm.tmc.edu/projects/conditions_for_use.html .

All the files and tables in this directory are freely usable for any purpose.

      Name                     Last modified      Size  Description
Parent Directory - all_est.sql 2016-05-15 11:33 2.1K all_est.txt.gz 2016-05-15 11:33 9.8M all_mrna.sql 2019-07-14 09:26 2.1K all_mrna.txt.gz 2019-07-14 09:26 2.3M bigFiles.sql 2021-05-09 03:05 1.4K bigFiles.txt.gz 2021-05-09 03:05 33 blastHg18KG.sql 2007-10-15 11:47 2.1K blastHg18KG.txt.gz 2007-10-15 11:47 1.2M chainCi2.sql 2010-03-14 14:19 1.8K chainCi2.txt.gz 2010-03-14 14:19 11M chainCi2Link.sql 2010-03-14 14:19 1.5K chainCi2Link.txt.gz 2010-03-14 14:19 54M chainCi3.sql 2017-06-13 19:56 1.7K chainCi3.txt.gz 2017-06-13 19:56 1.5M chainCi3Link.sql 2017-06-13 19:56 1.5K chainCi3Link.txt.gz 2017-06-13 19:56 3.8M chainHg18.sql 2007-10-15 11:47 1.7K chainHg18.txt.gz 2007-10-15 11:49 69M chainHg18Link.sql 2007-10-15 11:50 1.4K chainHg18Link.txt.gz 2007-10-15 11:55 225M chromInfo.sql 2007-10-10 14:50 1.2K chromInfo.txt.gz 2007-10-10 14:50 584K cytoBandIdeo.sql 2013-04-28 22:00 1.5K cytoBandIdeo.txt.gz 2013-04-28 22:00 503K estOrientInfo.sql 2016-05-15 11:33 1.8K estOrientInfo.txt.gz 2016-05-15 11:33 2.3M gap.sql 2007-10-10 14:50 1.5K gap.txt.gz 2007-10-10 14:50 889K gbLoaded.sql 2020-09-02 07:33 1.6K gbLoaded.txt.gz 2020-09-02 07:33 44K gc5Base.sql 2007-10-10 14:51 1.7K gc5Base.txt.gz 2007-10-10 14:51 5.6M genscan.sql 2007-10-10 14:51 1.6K genscan.txt.gz 2007-10-10 14:51 2.6M genscanPep.sql 2007-10-10 14:51 1.2K genscanPep.txt.gz 2007-10-10 14:51 12M genscanSubopt.sql 2007-10-10 14:51 1.5K genscanSubopt.txt.gz 2007-10-10 14:51 3.1M gold.sql 2007-10-10 14:51 1.6K gold.txt.gz 2007-10-10 14:51 2.8M grp.sql 2014-03-02 04:14 1.4K grp.txt.gz 2014-03-02 04:14 245 hgFindSpec.sql 2020-12-06 08:27 1.7K hgFindSpec.txt.gz 2020-12-06 08:27 613 history.sql 2007-10-10 14:52 1.4K history.txt.gz 2007-10-10 14:52 558 intronEst.sql 2016-05-15 11:33 2.1K intronEst.txt.gz 2016-05-15 11:33 2.7M microsat.sql 2015-08-24 01:57 1.5K microsat.txt.gz 2015-08-24 01:57 144K mrnaOrientInfo.sql 2020-03-01 09:02 1.8K mrnaOrientInfo.txt.gz 2020-03-01 09:02 463K netCi2.sql 2010-03-14 14:20 2.3K netCi2.txt.gz 2010-03-14 14:20 4.5M netCi3.sql 2017-06-13 19:56 2.1K netCi3.txt.gz 2017-06-13 19:56 1.3M netHg18.sql 2007-10-15 12:01 2.2K netHg18.txt.gz 2007-10-15 12:01 12M quality.sql 2007-10-10 14:52 1.7K quality.txt.gz 2007-10-10 14:52 20M refFlat.sql 2020-09-02 07:33 1.7K refFlat.txt.gz 2020-09-02 07:33 47K refGene.sql 2020-09-02 07:33 1.9K refGene.txt.gz 2020-09-02 07:33 52K refSeqAli.sql 2020-03-01 09:02 2.1K refSeqAli.txt.gz 2020-03-01 09:02 63K rmsk.sql 2007-10-10 14:52 1.9K rmsk.txt.gz 2007-10-10 14:53 20M simpleRepeat.sql 2007-10-10 14:53 2.0K simpleRepeat.txt.gz 2007-10-10 14:53 10M tableDescriptions.sql 2019-07-21 03:43 1.4K tableDescriptions.txt.gz 2019-07-21 03:43 4.9K tableList.sql 2021-05-09 03:05 1.6K tableList.txt.gz 2021-05-09 03:05 2.7K trackDb.sql 2020-12-06 08:27 2.0K trackDb.txt.gz 2020-12-06 08:27 24K xenoMrna.sql 2020-09-02 07:33 2.1K xenoMrna.txt.gz 2020-09-02 07:33 117M xenoRefFlat.sql 2020-09-02 07:33 1.7K xenoRefFlat.txt.gz 2020-09-02 07:33 9.5M xenoRefGene.sql 2020-09-02 07:33 1.9K xenoRefGene.txt.gz 2020-09-02 07:33 11M xenoRefSeqAli.sql 2020-09-02 07:33 2.1K xenoRefSeqAli.txt.gz 2020-09-02 07:33 10M