This directory contains a dump of the UCSC genome annotation database for
the June 2008 assembly of the S. cerevisiae genome (sacCer2, SGD June 2008).
The annotations were generated by UCSC and collaborators worldwide.

The data is based on sequence dated June 2008 in the Saccharomyces Genome
Database (http://www.yeastgenome.org/) and was obtained from the site
http://downloads.yeastgenome.org/sequence/genomic_sequence/chromosomes/fasta/
The S288C strain was used in this sequencing project.

Files included in this directory (updated nightly):

  - *.sql files:  the MySQL commands used to create the tables

  - *.txt.gz files: the database tables in a tab-delimited format
    compressed with gzip.

To see descriptions of the tables underlying Genome Browser annotation
tracks, select the table in the Table Browser:
  http://genome.ucsc.edu/cgi-bin/hgTables?db=sacCer2
and click the "describe table schema" button.  There is also a "view
table schema" link on the configuration page for each track.

---------------------------------------------------------------
If you plan to download a large file or multiple files from this 
directory, we recommend you use ftp rather than downloading the files 
via our website. To do so, ftp to hgdownload.cse.ucsc.edu, then go to 
the directory goldenPath/sacCer2/database/. To download multiple 
files, use the "mget" command:

    mget <filename1> <filename2> ...
    - or -
    mget -a (to download all the files in the directory) 

Alternate methods to ftp access.

Using an rsync command to download the entire directory:
    rsync -avzP rsync://hgdownload.cse.ucsc.edu/goldenPath/sacCer2/database/ .
For a single file, e.g. gc5BaseBw.txt.gz
    rsync -avzP 
        rsync://hgdownload.cse.ucsc.edu/goldenPath/sacCer2/database/gc5BaseBw.txt.gz .

Or with wget, all files:
    wget --timestamping 
        'ftp://hgdownload.cse.ucsc.edu/goldenPath/sacCer2/database/*'
With wget, a single file: 
    wget --timestamping 
        'ftp://hgdownload.cse.ucsc.edu/goldenPath/sacCer2/database/gc5BaseBw.txt.gz' 
        -O gc5BaseBw.txt.gz

Please note that some files contents, such as this example gc5BaseBw.txt.gz,
will point to the data being hosted in another /gbdb/ location, which
refers to ftp://hgdownload.cse.ucsc.edu/gbdb/

To uncompress the *.txt.gz files:
    gunzip <table>.txt.gz
The tables can be loaded directly from the .txt.gz compressed file.
It is not necessary to uncompress them to load into a database,
as shown in the example below.

To load one of the tables directly into your local mirror database,
for example the table chromInfo:
## create table from the sql definition
$ hgsql sacCer2 < chromInfo.sql
## load data from the txt.gz file
$ zcat chromInfo.txt.gz | hgsql sacCer2 --local-infile=1 
        -e 'LOAD DATA LOCAL INFILE "/dev/stdin" INTO TABLE chromInfo;'

All the files and tables in this directory are freely usable for any purpose.
      Name                           Last modified      Size  Description
Parent Directory - 2micron_est.sql 2012-05-28 14:19 2.3K 2micron_est.txt.gz 2012-05-28 14:19 607 2micron_gap.sql 2009-08-09 10:21 1.6K 2micron_gap.txt.gz 2009-08-09 10:21 36 2micron_gold.sql 2009-08-09 10:21 1.7K 2micron_gold.txt.gz 2009-08-09 10:21 74 2micron_intronEst.sql 2009-08-06 15:37 2.3K 2micron_intronEst.txt.gz 2009-08-06 15:37 42 2micron_mrna.sql 2009-08-09 10:21 2.3K 2micron_mrna.txt.gz 2009-08-09 10:21 37 all_est.sql 2020-09-01 14:39 2.1K all_est.txt.gz 2020-09-01 14:39 960K all_mrna.sql 2020-09-01 14:05 2.1K all_mrna.txt.gz 2020-09-01 14:05 44K augustusGene.sql 2015-07-26 17:28 1.9K augustusGene.txt.gz 2015-07-26 17:28 109K bigFiles.sql 2021-05-02 03:06 1.4K bigFiles.txt.gz 2021-05-02 03:06 33 blastHg18KG.sql 2009-08-09 10:21 2.3K blastHg18KG.txt.gz 2009-08-09 10:21 293K ceBlastTab.sql 2010-08-29 10:59 1.6K ceBlastTab.txt.gz 2010-08-29 10:59 48K choExpDistance.sql 2009-08-09 10:21 1.3K choExpDistance.txt.gz 2009-08-09 10:21 34M chrIII_est.sql 2020-09-01 14:39 2.1K chrIII_est.txt.gz 2020-09-01 14:39 32K chrIII_gap.sql 2009-08-09 10:21 1.6K chrIII_gap.txt.gz 2009-08-09 10:21 35 chrIII_gold.sql 2009-08-09 10:20 1.7K chrIII_gold.txt.gz 2009-08-09 10:20 72 chrIII_intronEst.sql 2020-09-01 14:39 2.1K chrIII_intronEst.txt.gz 2020-09-01 14:39 1.5K chrIII_mrna.sql 2020-09-01 14:05 2.1K chrIII_mrna.txt.gz 2020-09-01 14:05 1.2K chrII_est.sql 2020-09-01 14:39 2.1K chrII_est.txt.gz 2020-09-01 14:39 71K chrII_gap.sql 2009-08-09 10:21 1.6K chrII_gap.txt.gz 2009-08-09 10:21 34 chrII_gold.sql 2009-08-06 15:37 1.7K chrII_gold.txt.gz 2009-08-06 15:37 70 chrII_intronEst.sql 2020-09-01 14:39 2.1K chrII_intronEst.txt.gz 2020-09-01 14:39 9.0K chrII_mrna.sql 2020-09-01 14:05 2.1K chrII_mrna.txt.gz 2020-09-01 14:05 3.2K chrIV_est.sql 2020-09-01 14:39 2.1K chrIV_est.txt.gz 2020-09-01 14:39 148K chrIV_gap.sql 2009-08-09 10:20 1.6K chrIV_gap.txt.gz 2009-08-09 10:20 34 chrIV_gold.sql 2009-08-09 10:20 1.7K chrIV_gold.txt.gz 2009-08-09 10:20 70 chrIV_intronEst.sql 2020-09-01 14:39 2.1K chrIV_intronEst.txt.gz 2020-09-01 14:39 12K chrIV_mrna.sql 2020-09-01 14:05 2.1K chrIV_mrna.txt.gz 2020-09-01 14:05 5.6K chrIX_est.sql 2020-09-01 14:39 2.1K chrIX_est.txt.gz 2020-09-01 14:39 24K chrIX_gap.sql 2009-08-09 10:21 1.6K chrIX_gap.txt.gz 2009-08-09 10:21 34 chrIX_gold.sql 2009-08-06 15:37 1.7K chrIX_gold.txt.gz 2009-08-06 15:37 70 chrIX_intronEst.sql 2020-09-01 14:39 2.1K chrIX_intronEst.txt.gz 2020-09-01 14:39 2.6K chrIX_mrna.sql 2020-09-01 14:05 2.1K chrIX_mrna.txt.gz 2020-09-01 14:05 1.6K chrI_est.sql 2020-09-01 14:39 2.1K chrI_est.txt.gz 2020-09-01 14:39 11K chrI_gap.sql 2009-08-09 10:20 1.6K chrI_gap.txt.gz 2009-08-09 10:20 33 chrI_gold.sql 2009-08-09 10:20 1.7K chrI_gold.txt.gz 2009-08-09 10:20 68 chrI_intronEst.sql 2020-09-01 14:08 2.1K chrI_intronEst.txt.gz 2020-09-01 14:08 1.1K chrI_mrna.sql 2020-09-01 14:05 2.1K chrI_mrna.txt.gz 2020-09-01 14:05 941 chrM_est.sql 2020-09-01 14:06 2.1K chrM_est.txt.gz 2020-09-01 14:06 33 chrM_gap.sql 2009-08-09 10:20 1.6K chrM_gap.txt.gz 2009-08-09 10:20 33 chrM_gold.sql 2009-08-06 15:37 1.7K chrM_gold.txt.gz 2009-08-06 15:37 68 chrM_intronEst.sql 2020-09-01 14:08 2.1K chrM_intronEst.txt.gz 2020-09-01 14:08 39 chrM_mrna.sql 2020-09-01 14:05 2.1K chrM_mrna.txt.gz 2020-09-01 14:05 854 chrVIII_est.sql 2020-09-01 14:39 2.1K chrVIII_est.txt.gz 2020-09-01 14:39 32K chrVIII_gap.sql 2009-08-09 10:21 1.6K chrVIII_gap.txt.gz 2009-08-09 10:21 36 chrVIII_gold.sql 2009-08-09 10:21 1.7K chrVIII_gold.txt.gz 2009-08-09 10:21 74 chrVIII_intronEst.sql 2020-09-01 14:39 2.1K chrVIII_intronEst.txt.gz 2020-09-01 14:39 3.7K chrVIII_mrna.sql 2020-09-01 14:05 2.1K chrVIII_mrna.txt.gz 2020-09-01 14:05 1.9K chrVII_est.sql 2020-09-01 14:39 2.1K chrVII_est.txt.gz 2020-09-01 14:39 84K chrVII_gap.sql 2009-08-09 10:20 1.6K chrVII_gap.txt.gz 2009-08-09 10:20 35 chrVII_gold.sql 2009-08-06 15:37 1.7K chrVII_gold.txt.gz 2009-08-06 15:37 72 chrVII_intronEst.sql 2020-09-01 14:39 2.1K chrVII_intronEst.txt.gz 2020-09-01 14:39 8.4K chrVII_mrna.sql 2020-09-01 14:05 2.1K chrVII_mrna.txt.gz 2020-09-01 14:05 4.4K chrVI_est.sql 2020-09-01 14:39 2.1K chrVI_est.txt.gz 2020-09-01 14:39 30K chrVI_gap.sql 2009-08-06 15:37 1.6K chrVI_gap.txt.gz 2009-08-06 15:37 34 chrVI_gold.sql 2009-08-09 10:21 1.7K chrVI_gold.txt.gz 2009-08-09 10:21 70 chrVI_intronEst.sql 2020-09-01 14:39 2.1K chrVI_intronEst.txt.gz 2020-09-01 14:39 2.9K chrVI_mrna.sql 2020-09-01 14:05 2.1K chrVI_mrna.txt.gz 2020-09-01 14:05 1.1K chrV_est.sql 2020-09-01 14:39 2.1K chrV_est.txt.gz 2020-09-01 14:39 52K chrV_gap.sql 2009-08-09 10:20 1.6K chrV_gap.txt.gz 2009-08-09 10:20 33 chrV_gold.sql 2009-08-09 10:20 1.7K chrV_gold.txt.gz 2009-08-09 10:20 68 chrV_intronEst.sql 2020-09-01 14:39 2.1K chrV_intronEst.txt.gz 2020-09-01 14:39 3.5K chrV_mrna.sql 2020-09-01 14:05 2.1K chrV_mrna.txt.gz 2020-09-01 14:05 2.6K chrXIII_est.sql 2020-09-01 14:39 2.1K chrXIII_est.txt.gz 2020-09-01 14:39 70K chrXIII_gap.sql 2009-08-09 10:21 1.6K chrXIII_gap.txt.gz 2009-08-09 10:21 36 chrXIII_gold.sql 2009-08-06 15:37 1.7K chrXIII_gold.txt.gz 2009-08-06 15:37 75 chrXIII_intronEst.sql 2020-09-01 14:39 2.1K chrXIII_intronEst.txt.gz 2020-09-01 14:39 5.7K chrXIII_mrna.sql 2020-09-01 14:05 2.1K chrXIII_mrna.txt.gz 2020-09-01 14:05 3.4K chrXII_est.sql 2020-09-01 14:39 2.1K chrXII_est.txt.gz 2020-09-01 14:39 81K chrXII_gap.sql 2009-08-06 15:37 1.6K chrXII_gap.txt.gz 2009-08-06 15:37 35 chrXII_gold.sql 2009-08-09 10:20 1.7K chrXII_gold.txt.gz 2009-08-09 10:20 73 chrXII_intronEst.sql 2020-09-01 14:39 2.1K chrXII_intronEst.txt.gz 2020-09-01 14:39 5.7K chrXII_mrna.sql 2020-09-01 14:05 2.1K chrXII_mrna.txt.gz 2020-09-01 14:05 4.6K chrXIV_est.sql 2020-09-01 14:39 2.1K chrXIV_est.txt.gz 2020-09-01 14:39 47K chrXIV_gap.sql 2009-08-09 10:21 1.6K chrXIV_gap.txt.gz 2009-08-09 10:21 35 chrXIV_gold.sql 2009-08-06 15:37 1.7K chrXIV_gold.txt.gz 2009-08-06 15:37 73 chrXIV_intronEst.sql 2020-09-01 14:39 2.1K chrXIV_intronEst.txt.gz 2020-09-01 14:39 2.5K chrXIV_mrna.sql 2020-09-01 14:05 2.1K chrXIV_mrna.txt.gz 2020-09-01 14:05 2.8K chrXI_est.sql 2020-09-01 14:39 2.1K chrXI_est.txt.gz 2020-09-01 14:39 49K chrXI_gap.sql 2009-08-09 10:21 1.6K chrXI_gap.txt.gz 2009-08-09 10:21 34 chrXI_gold.sql 2009-08-09 10:21 1.7K chrXI_gold.txt.gz 2009-08-09 10:21 71 chrXI_intronEst.sql 2020-09-01 14:39 2.1K chrXI_intronEst.txt.gz 2020-09-01 14:39 3.3K chrXI_mrna.sql 2020-09-01 14:05 2.1K chrXI_mrna.txt.gz 2020-09-01 14:05 2.4K chrXVI_est.sql 2020-09-01 14:39 2.1K chrXVI_est.txt.gz 2020-09-01 14:39 84K chrXVI_gap.sql 2009-08-09 10:20 1.6K chrXVI_gap.txt.gz 2009-08-09 10:20 35 chrXVI_gold.sql 2009-08-09 10:21 1.7K chrXVI_gold.txt.gz 2009-08-09 10:21 73 chrXVI_intronEst.sql 2020-09-01 14:39 2.1K chrXVI_intronEst.txt.gz 2020-09-01 14:39 6.6K chrXVI_mrna.sql 2020-09-01 14:05 2.1K chrXVI_mrna.txt.gz 2020-09-01 14:05 3.1K chrXV_est.sql 2020-09-01 14:39 2.1K chrXV_est.txt.gz 2020-09-01 14:39 100K chrXV_gap.sql 2009-08-09 10:20 1.6K chrXV_gap.txt.gz 2009-08-09 10:20 34 chrXV_gold.sql 2009-08-09 10:21 1.7K chrXV_gold.txt.gz 2009-08-09 10:21 71 chrXV_intronEst.sql 2020-09-01 14:39 2.1K chrXV_intronEst.txt.gz 2020-09-01 14:39 5.3K chrXV_mrna.sql 2020-09-01 14:05 2.1K chrXV_mrna.txt.gz 2020-09-01 14:05 3.2K chrX_est.sql 2020-09-01 14:39 2.1K chrX_est.txt.gz 2020-09-01 14:39 49K chrX_gap.sql 2009-08-09 10:21 1.6K chrX_gap.txt.gz 2009-08-09 10:21 33 chrX_gold.sql 2009-08-09 10:20 1.7K chrX_gold.txt.gz 2009-08-09 10:20 68 chrX_intronEst.sql 2020-09-01 14:39 2.1K chrX_intronEst.txt.gz 2020-09-01 14:39 3.3K chrX_mrna.sql 2020-09-01 14:05 2.1K chrX_mrna.txt.gz 2020-09-01 14:05 3.4K chromInfo.sql 2009-08-09 10:20 1.3K chromInfo.txt.gz 2009-08-09 10:20 203 dmBlastTab.sql 2010-08-29 10:59 1.6K dmBlastTab.txt.gz 2010-08-29 10:59 49K drBlastTab.sql 2013-10-27 21:15 1.7K drBlastTab.txt.gz 2013-10-27 21:15 55K ensGene.sql 2011-03-15 11:37 1.9K ensGene.txt.gz 2011-03-15 11:37 149K ensGtp.sql 2011-03-15 11:37 1.4K ensGtp.txt.gz 2011-03-15 11:37 30K ensPep.sql 2011-03-15 11:37 1.3K ensPep.txt.gz 2011-03-15 11:37 1.7M esRegGeneToModule.sql 2009-08-06 15:37 1.3K esRegGeneToModule.txt.gz 2009-08-06 15:37 9.1K esRegGeneToMotif.sql 2009-08-06 15:37 1.6K esRegGeneToMotif.txt.gz 2009-08-06 15:37 39K esRegMotif.sql 2009-08-06 15:37 1.4K esRegMotif.txt.gz 2009-08-06 15:37 17K esRegUpstreamRegion.sql 2009-08-09 10:20 1.6K esRegUpstreamRegion.txt.gz 2009-08-09 10:20 19K estOrientInfo.sql 2020-09-01 14:39 1.8K estOrientInfo.txt.gz 2020-09-01 14:39 304K extFile.sql 2009-08-06 15:37 1.4K extFile.txt.gz 2009-08-06 15:37 289 gbLoaded.sql 2020-09-01 14:39 1.6K gbLoaded.txt.gz 2020-09-01 14:39 1.4K gc5Base.sql 2009-08-09 10:21 1.9K gc5Base.txt.gz 2009-08-09 10:21 43K growthCondition.sql 2011-09-12 00:03 1.3K growthCondition.txt.gz 2011-09-12 00:03 685 grp.sql 2014-03-02 04:14 1.4K grp.txt.gz 2014-03-02 04:14 199 hgBlastTab.sql 2010-08-29 10:59 1.6K hgBlastTab.txt.gz 2010-08-29 10:59 56K hgFindSpec.sql 2020-12-06 08:25 1.7K hgFindSpec.txt.gz 2020-12-06 08:25 894 history.sql 2009-08-09 10:21 1.6K history.txt.gz 2009-08-09 10:21 1.2K microsat.sql 2015-08-24 01:24 1.5K microsat.txt.gz 2015-08-24 01:24 341 mmBlastTab.sql 2011-05-30 01:51 1.6K mmBlastTab.txt.gz 2011-05-30 01:51 55K mrnaOrientInfo.sql 2020-09-01 14:05 1.8K mrnaOrientInfo.txt.gz 2020-09-01 14:05 18K multiz7way.sql 2009-08-09 10:20 1.5K multiz7way.txt.gz 2009-08-09 10:20 537K multiz7wayFrames.sql 2009-08-06 15:37 1.8K multiz7wayFrames.txt.gz 2009-08-06 15:37 79K multiz7waySummary.sql 2009-08-09 10:20 1.6K multiz7waySummary.txt.gz 2009-08-09 10:20 33K oreganno.sql 2016-05-15 11:29 1.5K oreganno.txt.gz 2016-05-15 11:29 85K oregannoAttr.sql 2016-05-15 11:29 1.4K oregannoAttr.txt.gz 2016-05-15 11:29 118K oregannoLink.sql 2016-05-15 11:29 1.4K oregannoLink.txt.gz 2016-05-15 11:29 83K phastCons7way.sql 2009-08-09 10:20 1.9K phastCons7way.txt.gz 2009-08-09 10:20 301K phastConsElements7way.sql 2009-08-09 10:21 1.6K phastConsElements7way.txt.gz 2009-08-09 10:21 382K pubsBingBlat.sql 2014-01-26 18:33 2.4K pubsBingBlat.txt.gz 2014-01-26 18:33 1.3M pubsBingBlatPsl.sql 2014-01-26 18:33 2.2K pubsBingBlatPsl.txt.gz 2014-01-26 18:33 1.1M pubsBlat.sql 2012-05-09 09:26 1.9K pubsBlat.txt.gz 2012-05-09 09:26 384K pubsBlatPsl.sql 2012-05-09 09:26 2.1K pubsBlatPsl.txt.gz 2012-05-09 09:26 657K rnBlastTab.sql 2010-08-29 10:59 1.6K rnBlastTab.txt.gz 2010-08-29 10:59 31K sgdAbundance.sql 2009-08-09 10:21 1.3K sgdAbundance.txt.gz 2009-08-09 10:21 19K sgdBlastTab.sql 2010-08-29 10:59 1.6K sgdBlastTab.txt.gz 2010-08-29 10:59 821K sgdCanonical.sql 2009-08-09 10:20 1.6K sgdCanonical.txt.gz 2009-08-09 10:20 102K sgdClone.sql 2009-08-09 10:20 1.5K sgdClone.txt.gz 2009-08-09 10:20 16K sgdDescription.sql 2009-08-06 15:37 1.3K sgdDescription.txt.gz 2009-08-06 15:37 317K sgdGene.sql 2009-08-09 10:21 1.8K sgdGene.txt.gz 2009-08-09 10:21 131K sgdIsoforms.sql 2009-08-06 15:37 1.4K sgdIsoforms.txt.gz 2009-08-06 15:37 30K sgdLocalization.sql 2009-08-06 15:37 1.3K sgdLocalization.txt.gz 2009-08-06 15:37 19K sgdOther.sql 2009-08-06 15:37 1.6K sgdOther.txt.gz 2009-08-06 15:37 33K sgdOtherDescription.sql 2009-08-09 10:20 1.3K sgdOtherDescription.txt.gz 2009-08-09 10:20 15K sgdPep.sql 2009-08-09 10:21 1.3K sgdPep.txt.gz 2009-08-09 10:21 1.6M sgdToName.sql 2009-08-06 15:37 1.3K sgdToName.txt.gz 2009-08-06 15:37 38K sgdToPfam.sql 2009-08-09 10:20 1.3K sgdToPfam.txt.gz 2009-08-09 10:20 22K sgdToSwissProt.sql 2009-08-09 10:20 1.3K sgdToSwissProt.txt.gz 2009-08-09 10:20 32K simpleRepeat.sql 2009-08-09 10:20 2.0K simpleRepeat.txt.gz 2009-08-09 10:20 54K tableDescriptions.sql 2019-07-21 03:43 1.4K tableDescriptions.txt.gz 2019-07-21 03:43 8.2K tableList.sql 2021-05-02 03:06 1.6K tableList.txt.gz 2021-05-02 03:06 7.9K trackDb.sql 2020-12-06 08:25 2.0K trackDb.txt.gz 2020-12-06 08:25 36K transRegCode.sql 2009-08-09 10:21 1.6K transRegCode.txt.gz 2009-08-09 10:21 1.4M transRegCodeCondition.sql 2013-11-10 22:14 1.5K transRegCodeCondition.txt.gz 2013-11-10 22:14 1.2K transRegCodeMotif.sql 2009-08-09 10:21 1.4K transRegCodeMotif.txt.gz 2009-08-09 10:21 6.5K transRegCodeProbe.sql 2009-08-09 10:20 1.6K transRegCodeProbe.txt.gz 2009-08-09 10:20 143K uwFootprintsMappability.sql 2009-08-06 15:37 1.4K uwFootprintsMappability.txt.gz 2009-08-06 15:37 100K uwFootprintsPrints.sql 2009-08-06 15:37 1.5K uwFootprintsPrints.txt.gz 2009-08-06 15:37 52K uwFootprintsTagCounts.sql 2009-08-16 10:16 1.9K uwFootprintsTagCounts.txt.gz 2009-08-16 10:16 35M xenoRefFlat.sql 2020-09-01 14:19 1.7K xenoRefFlat.txt.gz 2020-09-01 14:19 629K xenoRefGene.sql 2020-09-01 14:19 1.9K xenoRefGene.txt.gz 2020-09-01 14:19 689K xenoRefSeqAli.sql 2020-09-01 14:19 2.1K xenoRefSeqAli.txt.gz 2020-09-01 14:19 1.0M yeastP2P.sql 2009-08-09 10:20 1.3K yeastP2P.txt.gz 2009-08-09 10:20 27M