This directory contains the Nov. 2002 freeze of the rat
genome from the Rat Genome Sequencing Consortium. The 
assembly was produced at the Baylor College of Medicine
Human Genome Seuqencing Center. For more information on 
the rat genome, see the Rat Genome Project website for 
the Baylor College of Medicine Human Genome Sequencing Center 
at http://www.hgsc.bcm.tmc.edu/. 

This data has specific conditions concerning its use. Refer
to http://genome.ucsc.edu/goldenPath/credits.html for
details.

Due to its large size, we are no longer providing the
database.zip file for this assembly (Genome Browser database
as tab-delimited files and associated MySQL table creation
files). The files formerly contained in database.zip may still
be downloaded individually from this assembly's database
directory.

If you plan to download a large file or multiple files from
this directory, we recommend that you use ftp rather than
downloading the files via our website. To do so, ftp to
hgarchive.cse.ucsc.edu, then go to the directory
goldenPath/rnNov2002/bigZips. To download multiple files, use
the "mget" command:

    mget <filename1> <filename2> ...
    - or -
    mget -a (to download all the files in the directory)

-------------------------------------------------------------
chromAgp.zip - Description of how the working draft was generated from
    fragments at a chromosome layout level. 

chromFa.zip - The working draft sequence chromosome in one file per 
    chromosome.  Repeats from RepeatMasker and Tandem Repeats Finder
    (with period of 12 or less) are in lower case; non-repeating 
    sequence is in upper case.

chromFaMasked.zip - The working draft sequence chromosomes, in one 
    file per chromosome. Repeats are masked by capital N's and
    non-repeating sequence is shown in upper case.

chromOut.zip - RepeatMasker .out file for chromosomes.  These were 
    created with RepeatMasker at the -s sensitive setting.

chromTrf.zip - Tandem Repeats Finder locations, filtered to keep repeats 
    with period less than or equal to 12, translated into one .bed file 
    per chromosomes.  

contigAgp.zip - Description of how the working draft was generated from
    fragments at a contig layout level. 

contigFa.zip - The working draft sequence contigs, in one file per 
    contig.  Repeats from RepeatMasker and Tandem Repeats Finder
    (with period of 12 or less) are in lower case while non-repeating 
    sequence is in upper case.

contigFaMasked.zip - The working draft sequence contigs, in one file
    per contig. Repeats are masked by capital N's and non-repeating 
    sequence is shown in upper case.

contigOut.zip - RepeatMasker .out file for contigs.  These were 
    created with RepeatMasker at the -s sensitive setting.

contigTrf.zip - Tandem Repeats Finder locations, filtered to keep repeats 
    with period less than or equal to 12, translated into one .bed file 
    per contig.  

      Name                    Last modified      Size  Description
Parent Directory - chromAgp.zip 2002-11-27 12:41 3.4M contigAgp.zip 2002-11-27 13:49 3.5M mrna.zip 2003-01-14 09:39 4.6M chromTrf.zip 2002-11-27 15:38 15M contigTrf.zip 2002-11-27 15:38 15M contigOut.zip 2002-11-27 13:53 133M chromOut.zip 2002-11-27 12:44 134M database.zip 2002-12-06 13:57 212M chromFaMasked.zip 2002-11-27 13:49 486M contigFaMasked.zip 2002-11-27 14:58 486M chromFa.zip 2002-11-27 13:23 804M contigFa.zip 2002-11-27 14:32 804M