This directory contains reciprocal-best netted chains for petMar1-mm9.

 - petMar1.mm9.rbest.net.gz: petMar1-referenced recip.best net to mm9.
 - petMar1.mm9.rbest.chain.gz: chains extracted from the recip.best
   net.  These can be passed to the liftOver program to translate coords
   from petMar1 to mm9 through the recip.best net.

 - mm9.petMar1.rbest.net.gz: mm9-referenced recip.best net.
 - mm9.petMar1.rbest.chain.gz: recip.best "liftOver" chains.
 - Checksum values for all files in this directory can be found in md5sum.txt.

 - axtRBestNet/petMar1.mm9.rbest.axt.gz: chained and netted alignments,
   i.e. the best chains in the Lamprey genome, with gaps in the best
   chains filled in by next-best chains where possible.  Only alignments
   that are reciprocal best are kept.  The axt format is
   described in http://genome.ucsc.edu/goldenPath/help/axt.html .
      Name                       Last modified      Size  Description
Parent Directory - axtRBestNet/ 2008-06-03 12:42 - md5sum.txt 2008-04-17 11:56 240 mm9.petMar1.rbest.chain.gz 2008-04-17 11:56 1.5M mm9.petMar1.rbest.net.gz 2008-04-17 11:56 2.2M petMar1.mm9.rbest.chain.gz 2008-04-17 11:56 1.5M petMar1.mm9.rbest.net.gz 2008-04-17 11:56 2.2M