This directory contains a dump of the UCSC genome annotation database for the
    Apr. 2017 (Panu_3.0/papAnu4) assembly of the baboon genome
    (papAnu4, Human Genome Sequencing Center) .

The annotations were generated by UCSC and collaborators worldwide.

For more information about this assembly, please note the NCBI resources:
    https://www.ncbi.nlm.nih.gov/genome/394
    https://www.ncbi.nlm.nih.gov/genome/assembly/1082401
    https://www.ncbi.nlm.nih.gov/bioproject/54005

Files included in this directory (updated nightly):

  - *.sql files:  the MySQL commands used to create the tables

  - *.txt.gz files: the database tables in a tab-delimited format
    compressed with gzip.

To see descriptions of the tables underlying Genome Browser annotation
tracks, select the table in the Table Browser:
  http://genome.ucsc.edu/cgi-bin/hgTables?db=papAnu4
and click the "describe table schema" button.  There is also a "view
table schema" link on the configuration page for each track.

---------------------------------------------------------------
If you plan to download a large file or multiple files from this
directory, we recommend you use ftp rather than downloading the files
via our website. To do so, ftp to hgdownload.soe.ucsc.edu, then go to
the directory goldenPath/papAnu4/database/. To download multiple
files, use the "mget" command:

    mget <filename1> <filename2> ...
    - or -
    mget -a (to download all the files in the directory)

Alternate methods to ftp access.

Using an rsync command to download the entire directory:
    rsync -avzP rsync://hgdownload.soe.ucsc.edu/goldenPath/papAnu4/database/ .
For a single file, e.g. gc5Base.txt.gz
    rsync -avzP 
        rsync://hgdownload.soe.ucsc.edu/goldenPath/papAnu4/database/gc5Base.txt.gz .

Or with wget, all files:
    wget --timestamping 
        'ftp://hgdownload.soe.ucsc.edu/goldenPath/papAnu4/database/*'
With wget, a single file:
    wget --timestamping 
        'ftp://hgdownload.soe.ucsc.edu/goldenPath/papAnu4/database/gc5Base.txt.gz' 
        -O gc5Base.txt.gz

To uncompress the *.txt.gz files:
    gunzip <table>.txt.gz
The tables can be loaded directly from the .txt.gz compressed file.
It is not necessary to uncompress them to load into a database,
as shown in the example below.

To load one of the tables directly into your local mirror database,
for example the table chromInfo:
## create table from the sql definition
$ hgsql papAnu4 < chromInfo.sql
## load data from the txt.gz file
$ zcat chromInfo.txt.gz | hgsql papAnu4 --local-infile=1 
        -e 'LOAD DATA LOCAL INFILE "/dev/stdin" INTO TABLE chromInfo;'

-----------------------------------------------------------------------------
GenBank Data Usage

The GenBank database is designed to provide and encourage access within
the scientific community to the most up to date and comprehensive DNA
sequence information. Therefore, NCBI places no restrictions on the use
or distribution of the GenBank data. However, some submitters may claim
patent, copyright, or other intellectual property rights in all or a
portion of the data they have submitted. NCBI is not in a position to
assess the validity of such claims, and therefore cannot provide comment
or unrestricted permission concerning the use, copying, or distribution
of the information contained in GenBank.
-----------------------------------------------------------------------------
All the files and tables in this directory are freely usable for any purpose.

      Name                        Last modified      Size  Description
Parent Directory - all_est.sql 2019-06-25 11:24 2.1K all_est.txt.gz 2019-06-25 11:24 6.0M all_mrna.sql 2019-06-25 11:25 2.1K all_mrna.txt.gz 2019-06-25 11:25 34K augustusGene.sql 2019-06-25 11:25 1.9K augustusGene.txt.gz 2019-06-25 11:25 2.3M bigFiles.sql 2021-05-09 03:03 1.4K bigFiles.txt.gz 2021-05-09 03:03 95 chainHg38.sql 2019-06-25 11:25 1.7K chainHg38.txt.gz 2019-06-25 11:25 541M chainHg38Link.sql 2019-06-25 11:27 1.5K chainHg38Link.txt.gz 2019-06-25 11:29 1.5G chainMm10.sql 2019-06-25 11:34 1.7K chainMm10.txt.gz 2019-06-25 11:34 65M chainMm10Link.sql 2019-06-25 11:34 1.5K chainMm10Link.txt.gz 2019-06-25 11:35 501M chromAlias.sql 2019-06-25 11:37 1.4K chromAlias.txt.gz 2019-06-25 11:37 651K chromInfo.sql 2019-06-25 11:37 1.4K chromInfo.txt.gz 2019-06-25 11:37 328K cpgIslandExt.sql 2019-06-25 11:38 1.7K cpgIslandExt.txt.gz 2019-06-25 11:38 660K cpgIslandExtUnmasked.sql 2019-06-25 11:38 1.7K cpgIslandExtUnmasked.txt.gz 2019-06-25 11:38 1.8M cytoBandIdeo.sql 2019-06-25 11:38 1.5K cytoBandIdeo.txt.gz 2019-06-25 11:38 320K ensGene.sql 2020-08-31 15:49 1.9K ensGene.txt.gz 2020-08-31 15:49 3.1M ensGtp.sql 2020-08-31 15:49 1.4K ensGtp.txt.gz 2020-08-31 15:49 518K ensPep.sql 2020-08-31 16:23 1.3K ensPep.txt.gz 2020-08-31 16:23 14M ensemblSource.sql 2020-08-31 16:23 1.4K ensemblSource.txt.gz 2020-08-31 16:23 158K ensemblToGeneName.sql 2020-08-31 15:49 1.4K ensemblToGeneName.txt.gz 2020-08-31 15:49 270K estOrientInfo.sql 2019-06-25 11:38 1.8K estOrientInfo.txt.gz 2019-06-25 11:38 1.7M extNcbiRefSeq.sql 2020-05-10 03:28 1.4K extNcbiRefSeq.txt.gz 2020-05-10 03:28 91 gap.sql 2019-06-25 11:38 1.6K gap.txt.gz 2019-06-25 11:38 703K gbLoaded.sql 2019-06-25 11:38 1.6K gbLoaded.txt.gz 2019-06-25 11:38 12K gc5BaseBw.sql 2019-06-25 11:38 1.3K gc5BaseBw.txt.gz 2019-06-25 11:38 66 genscan.sql 2019-06-25 11:38 1.7K genscan.txt.gz 2019-06-25 11:38 2.9M gold.sql 2019-06-25 11:38 1.7K gold.txt.gz 2019-06-25 11:38 1.6M grp.sql 2019-06-25 11:27 1.3K grp.txt.gz 2019-06-25 11:27 213 hgFindSpec.sql 2020-12-06 08:18 1.7K hgFindSpec.txt.gz 2020-12-06 08:18 1.2K history.sql 2019-06-25 11:37 1.6K history.txt.gz 2019-06-25 11:37 817 intronEst.sql 2019-06-25 11:37 2.1K intronEst.txt.gz 2019-06-25 11:37 3.0M microsat.sql 2019-06-25 11:38 1.5K microsat.txt.gz 2019-06-25 11:38 312K mrnaOrientInfo.sql 2019-06-25 11:38 1.8K mrnaOrientInfo.txt.gz 2019-06-25 11:38 17K ncbiRefSeq.sql 2020-05-10 03:28 1.9K ncbiRefSeq.txt.gz 2020-05-10 03:28 4.0M ncbiRefSeqCds.sql 2020-05-10 03:28 1.3K ncbiRefSeqCds.txt.gz 2020-05-10 03:28 473K ncbiRefSeqCurated.sql 2020-05-10 03:28 2.0K ncbiRefSeqCurated.txt.gz 2020-05-10 03:28 44K ncbiRefSeqLink.sql 2020-05-10 03:28 2.0K ncbiRefSeqLink.txt.gz 2020-05-10 03:28 2.2M ncbiRefSeqOther.sql 2020-05-10 03:28 1.3K ncbiRefSeqOther.txt.gz 2020-05-10 03:28 75 ncbiRefSeqPepTable.sql 2020-05-10 03:28 1.4K ncbiRefSeqPepTable.txt.gz 2020-05-10 03:28 12M ncbiRefSeqPredicted.sql 2020-05-10 03:28 2.0K ncbiRefSeqPredicted.txt.gz 2020-05-10 03:28 4.0M ncbiRefSeqPsl.sql 2020-05-10 03:28 2.1K ncbiRefSeqPsl.txt.gz 2020-05-10 03:28 5.7M nestedRepeats.sql 2019-06-25 11:38 1.9K nestedRepeats.txt.gz 2019-06-25 11:38 18M netHg38.sql 2019-06-25 11:38 2.1K netHg38.txt.gz 2019-06-25 11:38 28M netMm10.sql 2019-06-25 11:24 2.1K netMm10.txt.gz 2019-06-25 11:24 71M refFlat.sql 2019-06-25 11:25 1.7K refFlat.txt.gz 2019-06-25 11:25 41K refGene.sql 2019-06-25 11:27 1.9K refGene.txt.gz 2019-06-25 11:27 45K refSeqAli.sql 2019-06-25 11:34 2.1K refSeqAli.txt.gz 2019-06-25 11:34 47K rmsk.sql 2019-06-25 11:37 1.9K rmsk.txt.gz 2019-06-25 11:37 143M seqNcbiRefSeq.sql 2020-05-10 03:28 1.5K seqNcbiRefSeq.txt.gz 2020-05-10 03:28 1.3M simpleRepeat.sql 2019-06-25 11:38 1.9K simpleRepeat.txt.gz 2019-06-25 11:38 30M tableDescriptions.sql 2020-04-26 03:23 1.4K tableDescriptions.txt.gz 2020-04-26 03:23 6.3K tableList.sql 2021-05-09 03:03 1.6K tableList.txt.gz 2021-05-09 03:03 3.3K trackDb.sql 2020-12-06 08:18 2.0K trackDb.txt.gz 2020-12-06 08:18 42K ucscToINSDC.sql 2019-06-25 11:38 1.4K ucscToINSDC.txt.gz 2019-06-25 11:38 506K ucscToRefSeq.sql 2019-06-25 11:38 1.4K ucscToRefSeq.txt.gz 2019-06-25 11:38 496K windowmaskerSdust.sql 2019-06-25 11:38 1.5K windowmaskerSdust.txt.gz 2019-06-25 11:38 147M xenoRefFlat.sql 2019-06-25 11:39 1.7K xenoRefFlat.txt.gz 2019-06-25 11:39 22M xenoRefGene.sql 2019-06-25 11:39 1.9K xenoRefGene.txt.gz 2019-06-25 11:39 25M xenoRefSeqAli.sql 2019-06-25 11:39 2.1K xenoRefSeqAli.txt.gz 2019-06-25 11:39 23M