This directory contains reciprocal-best netted chains for neoSch1-ornAna2.

 - neoSch1.ornAna2.rbest.net.gz: neoSch1-referenced recip.best net to ornAna2.
 - neoSch1.ornAna2.rbest.chain.gz: chains extracted from the recip.best
   net.  These can be passed to the liftOver program to translate coords
   from neoSch1 to ornAna2 through the recip.best net.

 - ornAna2.neoSch1.rbest.net.gz: ornAna2-referenced recip.best net.
 - ornAna2.neoSch1.rbest.chain.gz: recip.best "liftOver" chains.

 - axtRBestNet/neoSch1.ornAna2.rbest.axt.gz reciprocal best alignments in
   AXT format

See also, description of AXT format::
    http://genome.ucsc.edu/goldenPath/help/axt.html
description of CHAIN format:
    http://genome.ucsc.edu/goldenPath/help/chain.html
description of NET format:
    http://genome.ucsc.edu/goldenPath/help/net.html

      Name                           Last modified      Size  Description
Parent Directory - axtRBestNet/ 2020-11-23 13:36 - md5sum.txt 2020-07-16 16:09 256 neoSch1.ornAna2.rbest.net.gz 2020-07-16 16:09 28M neoSch1.ornAna2.rbest.chain.gz 2020-07-16 16:09 16M ornAna2.neoSch1.rbest.chain.gz 2020-07-16 16:09 16M ornAna2.neoSch1.rbest.net.gz 2020-07-16 16:09 30M