This directory contains a dump of the UCSC genome annotation database for the
    Mar. 2015 (BGI_ZX_2015/nanPar1) assembly of the tibetan frog genome
    (nanPar1, ASM93562v1) .

The annotations were generated by UCSC and collaborators worldwide.

For more information about this assembly, please note the NCBI resources:
    http://www.ncbi.nlm.nih.gov/genome/36384
    http://www.ncbi.nlm.nih.gov/genome/assembly/302061
    http://www.ncbi.nlm.nih.gov/bioproject/243398

Files included in this directory (updated nightly):

  - *.sql files:  the MySQL commands used to create the tables

  - *.txt.gz files: the database tables in a tab-delimited format
    compressed with gzip.

To see descriptions of the tables underlying Genome Browser annotation
tracks, select the table in the Table Browser:
  http://genome.ucsc.edu/cgi-bin/hgTables?db=nanPar1
and click the "describe table schema" button.  There is also a "view
table schema" link on the configuration page for each track.

---------------------------------------------------------------
If you plan to download a large file or multiple files from this
directory, we recommend you use ftp rather than downloading the files
via our website. To do so, ftp to hgdownload.cse.ucsc.edu, then go to
the directory goldenPath/nanPar1/database/. To download multiple
files, use the "mget" command:

    mget <filename1> <filename2> ...
    - or -
    mget -a (to download all the files in the directory)

Alternate methods to ftp access.

Using an rsync command to download the entire directory:
    rsync -avzP rsync://hgdownload.cse.ucsc.edu/goldenPath/nanPar1/database/ .
For a single file, e.g. gc5BaseBw.txt.gz
    rsync -avzP 
        rsync://hgdownload.cse.ucsc.edu/goldenPath/nanPar1/database/gc5BaseBw.txt.gz .

Or with wget, all files:
    wget --timestamping 
        'ftp://hgdownload.cse.ucsc.edu/goldenPath/nanPar1/database/*'
With wget, a single file:
    wget --timestamping 
        'ftp://hgdownload.cse.ucsc.edu/goldenPath/nanPar1/database/gc5BaseBw.txt.gz' 
        -O gc5BaseBw.txt.gz

Please note that some files contents, such as this example gc5BaseBw.txt.gz,
will point to the data being hosted in another /gbdb/ location, which
refers to ftp://hgdownload.cse.ucsc.edu/gbdb/

To uncompress the *.txt.gz files:
    gunzip <table>.txt.gz
The tables can be loaded directly from the .txt.gz compressed file.
It is not necessary to uncompress them to load into a database,
as shown in the example below.

To load one of the tables directly into your local mirror database,
for example the table chromInfo:
## create table from the sql definition
$ hgsql nanPar1 < chromInfo.sql
## load data from the txt.gz file
$ zcat chromInfo.txt.gz | hgsql nanPar1 --local-infile=1 
        -e 'LOAD DATA LOCAL INFILE "/dev/stdin" INTO TABLE chromInfo;'

-----------------------------------------------------------------------------
GenBank Data Usage

The GenBank database is designed to provide and encourage access within
the scientific community to the most up to date and comprehensive DNA
sequence information. Therefore, NCBI places no restrictions on the use
or distribution of the GenBank data. However, some submitters may claim
patent, copyright, or other intellectual property rights in all or a
portion of the data they have submitted. NCBI is not in a position to
assess the validity of such claims, and therefore cannot provide comment
or unrestricted permission concerning the use, copying, or distribution
of the information contained in GenBank.
-----------------------------------------------------------------------------
All the files and tables in this directory are freely usable for any purpose.

      Name                        Last modified      Size  Description
Parent Directory - augustusGene.sql 2017-04-13 15:41 1.9K augustusGene.txt.gz 2017-04-13 15:41 2.5M author.sql 2017-04-13 15:41 1.4K author.txt.gz 2017-04-13 15:41 3.0M bigFiles.sql 2021-05-02 03:04 1.4K bigFiles.txt.gz 2021-05-02 03:04 95 cds.sql 2017-04-13 15:41 1.4K cds.txt.gz 2017-04-13 15:41 1.9M cell.sql 2017-04-13 15:41 1.4K cell.txt.gz 2017-04-13 15:41 40 chainGalGal6.sql 2019-01-20 20:20 1.7K chainGalGal6.txt.gz 2019-01-20 20:20 16M chainGalGal6Link.sql 2019-01-20 20:20 1.5K chainGalGal6Link.txt.gz 2019-01-20 20:20 74M chainXenTro7.sql 2019-08-18 03:19 1.7K chainXenTro7.txt.gz 2019-08-18 03:20 91M chainXenTro7Link.sql 2019-08-18 03:20 1.5K chainXenTro7Link.txt.gz 2019-08-18 03:20 277M chainXenTro9.sql 2017-12-14 12:42 1.7K chainXenTro9.txt.gz 2017-12-14 12:42 93M chainXenTro9Link.sql 2017-12-14 12:43 1.5K chainXenTro9Link.txt.gz 2017-12-14 12:43 285M chromAlias.sql 2017-04-13 16:01 1.4K chromAlias.txt.gz 2017-04-13 16:01 242K chromInfo.sql 2017-04-13 16:02 1.4K chromInfo.txt.gz 2017-04-13 16:02 95K cpgIslandExt.sql 2017-04-13 16:02 1.7K cpgIslandExt.txt.gz 2017-04-13 16:02 651K cpgIslandExtUnmasked.sql 2017-04-13 16:02 1.7K cpgIslandExtUnmasked.txt.gz 2017-04-13 16:02 4.2M cytoBandIdeo.sql 2017-04-13 16:02 1.5K cytoBandIdeo.txt.gz 2017-04-13 16:02 88K description.sql 2017-04-13 16:02 1.4K description.txt.gz 2017-04-13 16:02 8.4M development.sql 2017-04-13 16:02 1.4K development.txt.gz 2017-04-13 16:02 47 extNcbiRefSeq.sql 2020-05-10 03:28 1.4K extNcbiRefSeq.txt.gz 2020-05-10 03:28 90 gap.sql 2017-04-13 16:02 1.6K gap.txt.gz 2017-04-13 16:02 1.5M gbCdnaInfo.sql 2017-04-13 16:02 2.6K gbCdnaInfo.txt.gz 2017-04-13 16:02 7.9M gbExtFile.sql 2017-04-13 16:03 1.4K gbExtFile.txt.gz 2017-04-13 16:03 548 gbLoaded.sql 2020-08-19 20:15 1.6K gbLoaded.txt.gz 2020-08-19 20:15 5.5K gbMiscDiff.sql 2017-04-13 16:03 1.5K gbMiscDiff.txt.gz 2017-04-13 16:03 1.5K gbSeq.sql 2017-04-13 16:03 1.7K gbSeq.txt.gz 2017-04-13 16:03 12M gbStatus.sql 2017-04-13 16:04 1.9K gbStatus.txt.gz 2017-04-13 16:04 3.5M gbWarn.sql 2017-04-13 16:04 1.3K gbWarn.txt.gz 2017-04-13 16:04 31 gc5BaseBw.sql 2017-04-13 16:04 1.3K gc5BaseBw.txt.gz 2017-04-13 16:04 66 geneName.sql 2017-04-13 16:05 1.4K geneName.txt.gz 2017-04-13 16:05 2.3M genscan.sql 2017-04-13 15:41 1.7K genscan.txt.gz 2017-04-13 15:41 2.5M gold.sql 2017-04-13 15:46 1.7K gold.txt.gz 2017-04-13 15:46 2.1M grp.sql 2017-04-13 16:01 1.3K grp.txt.gz 2017-04-13 16:01 213 hgFindSpec.sql 2020-12-06 08:12 1.7K hgFindSpec.txt.gz 2020-12-06 08:12 818 history.sql 2017-04-13 16:02 1.6K history.txt.gz 2017-04-13 16:02 640 imageClone.sql 2017-04-13 16:02 1.5K imageClone.txt.gz 2017-04-13 16:02 35 keyword.sql 2017-04-13 16:02 1.4K keyword.txt.gz 2017-04-13 16:02 460 library.sql 2017-04-13 16:02 1.4K library.txt.gz 2017-04-13 16:02 43 microsat.sql 2017-04-13 15:41 1.5K microsat.txt.gz 2017-04-13 15:41 89K mrnaClone.sql 2017-04-13 15:41 1.4K mrnaClone.txt.gz 2017-04-13 15:41 1.3K ncbiRefSeq.sql 2020-05-10 03:28 1.9K ncbiRefSeq.txt.gz 2020-05-10 03:28 2.0M ncbiRefSeqCds.sql 2020-05-10 03:28 1.3K ncbiRefSeqCds.txt.gz 2020-05-10 03:28 159K ncbiRefSeqLink.sql 2020-05-10 03:28 2.0K ncbiRefSeqLink.txt.gz 2020-05-10 03:28 754K ncbiRefSeqOther.sql 2020-05-10 03:28 1.3K ncbiRefSeqOther.txt.gz 2020-05-10 03:28 75 ncbiRefSeqPepTable.sql 2020-05-10 03:28 1.4K ncbiRefSeqPepTable.txt.gz 2020-05-10 03:28 6.1M ncbiRefSeqPredicted.sql 2020-05-10 03:28 2.0K ncbiRefSeqPredicted.txt.gz 2020-05-10 03:28 2.0M ncbiRefSeqPsl.sql 2020-05-10 03:28 2.1K ncbiRefSeqPsl.txt.gz 2020-05-10 03:28 2.2M nestedRepeats.sql 2017-04-13 15:41 1.9K nestedRepeats.txt.gz 2017-04-13 15:41 144K netGalGal6.sql 2019-01-20 20:20 2.1K netGalGal6.txt.gz 2019-01-20 20:20 8.7M netXenTro7.sql 2019-08-18 03:21 2.1K netXenTro7.txt.gz 2019-08-18 03:21 13M netXenTro9.sql 2017-12-14 12:44 2.1K netXenTro9.txt.gz 2017-12-14 12:44 14M organism.sql 2017-04-13 16:02 1.4K organism.txt.gz 2017-04-13 16:02 266K productName.sql 2017-04-13 16:03 1.4K productName.txt.gz 2017-04-13 16:03 2.7M refLink.sql 2017-04-13 16:03 1.7K refLink.txt.gz 2017-04-13 16:03 11M refSeqStatus.sql 2017-04-13 16:04 1.6K refSeqStatus.txt.gz 2017-04-13 16:04 1.5M refSeqSummary.sql 2017-04-13 16:04 1.5K refSeqSummary.txt.gz 2017-04-13 16:04 5.9M rmsk.sql 2017-04-13 16:04 1.9K rmsk.txt.gz 2017-04-13 16:04 12M seqNcbiRefSeq.sql 2020-05-10 03:28 1.5K seqNcbiRefSeq.txt.gz 2020-05-10 03:28 386K sex.sql 2017-04-13 16:02 1.4K sex.txt.gz 2017-04-13 16:02 39 simpleRepeat.sql 2017-04-13 16:05 1.9K simpleRepeat.txt.gz 2017-04-13 16:05 28M source.sql 2017-04-13 16:07 1.4K source.txt.gz 2017-04-13 16:07 271K tableDescriptions.sql 2020-04-26 03:23 1.4K tableDescriptions.txt.gz 2020-04-26 03:23 7.5K tableList.sql 2021-05-02 03:04 1.6K tableList.txt.gz 2021-05-02 03:04 3.5K tissue.sql 2017-04-13 16:07 1.4K tissue.txt.gz 2017-04-13 16:07 59 trackDb.sql 2020-12-06 08:12 2.0K trackDb.txt.gz 2020-12-06 08:12 37K ucscToINSDC.sql 2017-04-13 16:07 1.4K ucscToINSDC.txt.gz 2017-04-13 16:07 148K ucscToRefSeq.sql 2017-04-13 16:07 1.4K ucscToRefSeq.txt.gz 2017-04-13 16:07 149K windowmaskerSdust.sql 2017-04-13 16:07 1.5K windowmaskerSdust.txt.gz 2017-04-13 16:08 105M xenoRefFlat.sql 2020-08-19 20:02 1.7K xenoRefFlat.txt.gz 2020-08-19 20:02 27M xenoRefGene.sql 2020-08-19 20:02 1.9K xenoRefGene.txt.gz 2020-08-19 20:02 30M xenoRefSeqAli.sql 2020-08-19 20:13 2.1K xenoRefSeqAli.txt.gz 2020-08-19 20:13 27M