This directory contains a dump of the UCSC genome annotation database for
the Jul. 2010 (Broad Institute Myoluc2.0/myoLuc2) assembly of the microbat genome (myoLuc2, Broad Institute (NCBI Project ID: 16951, Accession: GCA_000147115.1)).
The annotations were generated by UCSC and collaborators worldwide.

This assembly was produced by Broad Institute of MIT and Harvard.
For more information on the microbat genome, see the project website:
  http://www.ncbi.nlm.nih.gov/sites/entrez?Db=genomeprj&cmd=ShowDetailView&TermToSearch=16951

Files included in this directory (updated nightly):

  - *.sql files:  the MySQL commands used to create the tables

  - *.txt.gz files: the database tables in a tab-delimited format
    compressed with gzip.

To see descriptions of the tables underlying Genome Browser annotation
tracks, select the table in the Table Browser:
  http://genome.ucsc.edu/cgi-bin/hgTables?db=myoLuc2
and click the "describe table schema" button.  There is also a "view
table schema" link on the configuration page for each track.

---------------------------------------------------------------
If you plan to download a large file or multiple files from this 
directory, we recommend you use ftp rather than downloading the files 
via our website. To do so, ftp to hgdownload.cse.ucsc.edu, then go to 
the directory goldenPath/myoLuc2/database/. To download multiple 
files, use the "mget" command:

    mget <filename1> <filename2> ...
    - or -
    mget -a (to download all the files in the directory) 

Alternate methods to ftp access.

Using an rsync command to download the entire directory:
    rsync -avzP rsync://hgdownload.cse.ucsc.edu/goldenPath/myoLuc2/database/ .
For a single file, e.g. gc5BaseBw.txt.gz
    rsync -avzP 
        rsync://hgdownload.cse.ucsc.edu/goldenPath/myoLuc2/database/gc5BaseBw.txt.gz .

Or with wget, all files:
    wget --timestamping 
        'ftp://hgdownload.cse.ucsc.edu/goldenPath/myoLuc2/database/*'
With wget, a single file: 
    wget --timestamping 
        'ftp://hgdownload.cse.ucsc.edu/goldenPath/myoLuc2/database/gc5BaseBw.txt.gz' 
        -O gc5BaseBw.txt.gz

Please note that some files contents, such as this example gc5BaseBw.txt.gz,
will point to the data being hosted in another /gbdb/ location, which
refers to ftp://hgdownload.cse.ucsc.edu/gbdb/

To uncompress the *.txt.gz files:
    gunzip <table>.txt.gz
The tables can be loaded directly from the .txt.gz compressed file.
It is not necessary to uncompress them to load into a database,
as shown in the example below.

To load one of the tables directly into your local mirror database,
for example the table chromInfo:
## create table from the sql definition
$ hgsql myoLuc2 < chromInfo.sql
## load data from the txt.gz file
$ zcat chromInfo.txt.gz | hgsql myoLuc2 --local-infile=1 
        -e 'LOAD DATA LOCAL INFILE "/dev/stdin" INTO TABLE chromInfo;'


All the files and tables in this directory are freely usable for any purpose.

      Name                        Last modified      Size  Description
Parent Directory - all_mrna.sql 2017-09-18 10:08 2.1K all_mrna.txt.gz 2017-09-18 10:08 2.4K augustusGene.sql 2015-07-26 16:56 1.9K augustusGene.txt.gz 2015-07-26 16:56 2.4M bigFiles.sql 2021-05-09 03:09 1.4K bigFiles.txt.gz 2021-05-09 03:09 94 blastHg18KG.sql 2011-11-02 16:50 2.1K blastHg18KG.txt.gz 2011-11-02 16:50 3.5M chainMm10.sql 2013-10-27 18:52 1.7K chainMm10.txt.gz 2013-10-27 18:52 63M chainMm10Link.sql 2013-10-27 18:52 1.5K chainMm10Link.txt.gz 2013-10-27 18:53 420M chromAlias.sql 2018-02-18 07:37 1.4K chromAlias.txt.gz 2018-02-18 07:37 171K chromInfo.sql 2011-11-02 16:39 1.3K chromInfo.txt.gz 2011-11-02 16:39 60K cpgIslandExt.sql 2011-11-02 16:39 1.6K cpgIslandExt.txt.gz 2011-11-02 16:39 1.1M cpgIslandExtUnmasked.sql 2014-06-01 17:11 1.7K cpgIslandExtUnmasked.txt.gz 2014-06-01 17:11 1.2M cytoBandIdeo.sql 2013-04-28 19:14 1.5K cytoBandIdeo.txt.gz 2013-04-28 19:14 57K ensGene.sql 2020-08-31 15:43 1.9K ensGene.txt.gz 2020-08-31 15:43 2.0M ensGtp.sql 2020-08-31 15:43 1.4K ensGtp.txt.gz 2020-08-31 15:43 273K ensPep.sql 2020-08-31 16:05 1.3K ensPep.txt.gz 2020-08-31 16:05 6.0M ensemblSource.sql 2020-08-31 16:05 1.4K ensemblSource.txt.gz 2020-08-31 16:05 83K ensemblToGeneName.sql 2020-08-31 15:43 1.4K ensemblToGeneName.txt.gz 2020-08-31 15:43 115K extNcbiRefSeq.sql 2020-05-10 03:28 1.4K extNcbiRefSeq.txt.gz 2020-05-10 03:28 91 gap.sql 2011-11-02 16:38 1.5K gap.txt.gz 2011-11-02 16:38 798K gbLoaded.sql 2020-08-19 19:54 1.6K gbLoaded.txt.gz 2020-08-19 19:54 9.1K gc5BaseBw.sql 2011-11-02 16:42 1.2K gc5BaseBw.txt.gz 2011-11-02 16:42 63 genscan.sql 2013-12-10 02:57 1.7K genscan.txt.gz 2013-12-10 02:57 3.4M gold.sql 2011-11-02 16:39 1.6K gold.txt.gz 2011-11-02 16:39 1.1M grp.sql 2014-03-02 04:14 1.3K grp.txt.gz 2014-03-02 04:14 208 hgFindSpec.sql 2020-12-06 08:12 1.7K hgFindSpec.txt.gz 2020-12-06 08:12 1.2K history.sql 2011-11-02 16:42 1.5K history.txt.gz 2011-11-02 16:42 340 microsat.sql 2015-08-23 22:06 1.5K microsat.txt.gz 2015-08-23 22:06 778K mrnaOrientInfo.sql 2017-09-18 10:08 1.8K mrnaOrientInfo.txt.gz 2017-09-18 10:08 653 ncbiRefSeq.sql 2020-05-10 03:28 1.9K ncbiRefSeq.txt.gz 2020-05-10 03:28 2.8M ncbiRefSeqCds.sql 2020-05-10 03:28 1.3K ncbiRefSeqCds.txt.gz 2020-05-10 03:28 291K ncbiRefSeqCurated.sql 2020-05-10 03:28 2.0K ncbiRefSeqCurated.txt.gz 2020-05-10 03:28 968 ncbiRefSeqLink.sql 2020-05-10 03:28 2.0K ncbiRefSeqLink.txt.gz 2020-05-10 03:28 1.4M ncbiRefSeqOther.sql 2020-05-10 03:28 1.3K ncbiRefSeqOther.txt.gz 2020-05-10 03:28 75 ncbiRefSeqPepTable.sql 2020-05-10 03:28 1.4K ncbiRefSeqPepTable.txt.gz 2020-05-10 03:28 8.6M ncbiRefSeqPredicted.sql 2020-05-10 03:28 2.0K ncbiRefSeqPredicted.txt.gz 2020-05-10 03:28 2.8M ncbiRefSeqPsl.sql 2020-05-10 03:28 2.1K ncbiRefSeqPsl.txt.gz 2020-05-10 03:28 3.5M nestedRepeats.sql 2011-11-02 16:47 1.9K nestedRepeats.txt.gz 2011-11-02 16:48 8.5M netMm10.sql 2013-10-27 18:54 2.1K netMm10.txt.gz 2013-10-27 18:54 50M rmsk.sql 2011-11-02 16:44 1.8K rmsk.txt.gz 2011-11-02 16:45 83M seqNcbiRefSeq.sql 2020-05-10 03:28 1.5K seqNcbiRefSeq.txt.gz 2020-05-10 03:28 763K simpleRepeat.sql 2011-11-02 16:39 1.9K simpleRepeat.txt.gz 2011-11-02 16:39 17M tableDescriptions.sql 2020-04-26 03:23 1.4K tableDescriptions.txt.gz 2020-04-26 03:23 6.0K tableList.sql 2021-05-09 03:09 1.6K tableList.txt.gz 2021-05-09 03:09 2.8K trackDb.sql 2020-12-04 02:25 2.0K trackDb.txt.gz 2020-12-04 02:25 39K ucscToINSDC.sql 2013-09-15 16:53 1.4K ucscToINSDC.txt.gz 2013-09-15 16:53 85K ucscToRefSeq.sql 2018-02-18 07:37 1.4K ucscToRefSeq.txt.gz 2018-02-18 07:37 88K xenoMrna.sql 2020-08-19 19:23 2.1K xenoMrna.txt.gz 2020-08-19 19:23 370M xenoRefFlat.sql 2020-08-19 19:52 1.7K xenoRefFlat.txt.gz 2020-08-19 19:52 33M xenoRefGene.sql 2020-08-19 19:39 1.9K xenoRefGene.txt.gz 2020-08-19 19:39 37M xenoRefSeqAli.sql 2020-08-19 19:52 2.1K xenoRefSeqAli.txt.gz 2020-08-19 19:52 37M