This directory contains a dump of the UCSC genome annotation
database for the Oct. 2006 assembly of the opossum genome (UCSC
version monDom5) from the Broad Institute at MIT and Harvard.
The directory is updated nightly. The .txt.gz files contain the
database tables in a tab-delimited format compressed with gzip.
The .sql files contain the MySQL commands used to create the tables.
To see descriptions of the tables underlying Genome Browser annotation
tracks, select the table in the Table Browser:
http://genome.ucsc.edu/cgi-bin/hgTables?db=monDom5
and click the "describe table schema" button. There is also a "view
table schema" link on the configuration page for each track.
If you plan to download a large file or multiple files from
this directory, we recommend that you use ftp rather than
downloading the files via our website. To do so, ftp to
hgdownload.cse.ucsc.edu, then go to the directory
goldenPath/monDom5/database. To download multiple files,
use the "mget" command:
mget <filename1> <filename2> ...
- or -
mget -a (to download all the files in the directory)
-----------------------------------------------------------
All the tables in this directory are freely usable for any
purpose. The opossum sequence is made freely available before scientific
publication with the following understanding:
1. The data may be freely downloaded, used in analyses, and repackaged
in databases.
2. Users are free to use the data in scientific papers analyzing
particular genes and regions if the providers of these data (The
Broad Institute) are properly acknowledged.
3. The centers producing the data reserve the right to publish the
initial large-scale analyses of the data set, including large-scale
identification of regions of evolutionary conservation and large-scale
genomic assembly. Large-scale refers to regions with size on the order
of a chromosome (that is, 30 Mb or more).
4. Any redistribution of the data should carry this notice.
Name Last modified Size Description
Parent Directory -
chainRheMac3Link.txt.gz 2012-12-02 18:44 1.3G
chainPonAbe2Link.txt.gz 2010-12-10 11:39 1.2G
chainHg19Link.txt.gz 2010-12-10 11:28 1.2G
chainPanTro3Link.txt.gz 2011-06-12 11:18 1.2G
chainNeoSch1Link.txt.gz 2020-07-17 10:30 1.1G
chainLoxAfr3Link.txt.gz 2011-11-21 19:15 1.1G
chainMm10Link.txt.gz 2013-10-27 18:40 1.1G
chainCerSim1Link.txt.gz 2013-01-29 23:28 1.0G
chainEquCab2Link.txt.gz 2010-12-10 12:07 1.0G
chainOryCun2Link.txt.gz 2010-12-10 11:10 966M
chainXenTro9Link.txt.gz 2017-12-14 12:36 809M
chainXenTro3Link.txt.gz 2019-06-02 03:23 788M
chainBosTau7Link.txt.gz 2012-06-16 19:57 776M
chainCalJac3Link.txt.gz 2010-12-10 11:05 758M
chainRn6Link.txt.gz 2017-03-27 16:57 749M
chainRheMac3.txt.gz 2012-12-02 18:40 559M
chainSusScr2Link.txt.gz 2010-12-10 11:46 520M
chainPonAbe2.txt.gz 2010-12-10 12:20 430M
chainLoxAfr3.txt.gz 2011-11-21 19:09 420M
chainPanTro3.txt.gz 2011-06-12 11:25 344M
chainHg19.txt.gz 2010-12-10 12:26 340M
chainOryCun2.txt.gz 2010-12-10 12:28 337M
chainCanFam2Link.txt.gz 2010-12-10 11:01 330M
chainOrnAna1Link.txt.gz 2010-12-10 11:49 327M
chainNeoSch1.txt.gz 2020-07-17 10:23 318M
chainCalJac3.txt.gz 2010-12-10 11:21 272M
chainEquCab2.txt.gz 2010-12-10 11:23 254M
chainCerSim1.txt.gz 2013-01-29 23:32 253M
chainBosTau7.txt.gz 2012-06-16 20:30 250M
chainMm39Link.txt.gz 2020-11-25 07:49 240M
chainXenTro9.txt.gz 2017-12-14 12:34 230M
chainXenTro3.txt.gz 2019-06-02 03:21 223M
xenoMrna.txt.gz 2020-08-19 18:14 213M
chainAilMel1Link.txt.gz 2010-12-10 12:31 213M
windowmaskerSdust.txt.gz 2009-07-20 16:00 204M
rmsk.txt.gz 2009-07-20 16:03 199M
chainMm10.txt.gz 2013-10-27 18:38 198M
chainFelCat4Link.txt.gz 2010-12-10 11:52 165M
chainSusScr2.txt.gz 2010-12-10 11:25 153M
chainGalGal3Link.txt.gz 2010-12-10 10:58 144M
chainOviAri1Link.txt.gz 2011-04-25 09:59 114M
chainRn6.txt.gz 2017-03-27 16:46 103M
chainDanRer5Link.txt.gz 2010-12-10 12:30 98M
multiz9way.txt.gz 2010-12-10 11:22 93M
chainOrnAna1.txt.gz 2010-12-10 11:34 88M
phastCons9way.txt.gz 2010-12-10 11:03 76M
quality.txt.gz 2009-07-20 15:59 64M
chainPetMar2Link.txt.gz 2013-01-24 03:47 43M
chainMelGal5Link.txt.gz 2017-03-20 09:11 42M
chainMm39.txt.gz 2020-11-25 07:47 41M
chainGalGal3.txt.gz 2010-12-10 11:53 40M
chainCanFam2.txt.gz 2010-12-10 11:51 39M
chainMelGal1Link.txt.gz 2011-11-06 14:53 36M
netHg19.txt.gz 2010-12-10 11:53 34M
netPanTro3.txt.gz 2011-06-12 11:15 34M
chainOviAri1.txt.gz 2011-04-25 10:01 33M
multiz9waySummary.txt.gz 2010-12-10 11:57 33M
chainAilMel1.txt.gz 2010-12-10 11:02 33M
netNeoSch1.txt.gz 2020-07-17 10:31 33M
netCerSim1.txt.gz 2013-01-29 23:26 29M
chainFelCat4.txt.gz 2010-12-10 11:48 28M
netEquCab2.txt.gz 2010-12-10 11:57 28M
netPonAbe2.txt.gz 2010-12-10 11:23 28M
netCanFam2.txt.gz 2010-12-10 11:48 26M
simpleRepeat.txt.gz 2009-07-20 16:05 26M
xenoRefGene.txt.gz 2020-08-19 18:32 26M
xenoRefSeqAli.txt.gz 2020-08-19 18:45 25M
netRn6.txt.gz 2017-03-27 17:27 24M
netMm10.txt.gz 2013-10-27 18:44 23M
netOrnAna1.txt.gz 2010-12-10 11:56 23M
xenoRefFlat.txt.gz 2020-08-19 18:32 23M
nestedRepeats.txt.gz 2009-07-20 15:57 23M
netLoxAfr3.txt.gz 2011-11-21 19:12 22M
netAilMel1.txt.gz 2010-12-10 12:33 21M
netRheMac3.txt.gz 2012-12-02 18:39 21M
netCalJac3.txt.gz 2010-12-10 12:30 21M
netBosTau7.txt.gz 2012-06-16 20:26 20M
chainDanRer5.txt.gz 2010-12-10 11:02 19M
netFelCat4.txt.gz 2010-12-10 11:51 18M
multiz9wayFrames.txt.gz 2010-12-10 12:25 18M
netOryCun2.txt.gz 2010-12-10 11:03 18M
netSusScr2.txt.gz 2010-12-10 11:57 17M
netOviAri1.txt.gz 2011-04-25 10:01 16M
netMm39.txt.gz 2020-11-25 07:50 15M
gc5Base.txt.gz 2009-07-20 16:02 14M
chainPetMar2.txt.gz 2013-01-24 03:48 13M
nscanPep.txt.gz 2009-07-20 16:05 12M
chainMelGal5.txt.gz 2017-03-20 09:11 12M
netGalGal3.txt.gz 2010-12-10 11:45 9.3M
netDanRer5.txt.gz 2010-12-10 12:33 8.8M
netMelGal1.txt.gz 2011-11-06 14:42 8.5M
netMelGal5.txt.gz 2017-03-20 09:13 8.5M
chainMelGal1.txt.gz 2011-11-06 14:55 7.9M
genscanPep.txt.gz 2009-07-20 15:58 7.9M
netXenTro9.txt.gz 2017-12-14 12:38 7.8M
phastConsElements9way.txt.gz 2010-12-10 11:22 7.8M
netXenTro3.txt.gz 2019-06-02 03:26 7.5M
ensPep.txt.gz 2019-02-10 03:42 6.4M
nscanGene.txt.gz 2009-07-20 16:02 3.6M
blastHg18KG.txt.gz 2009-07-20 16:02 3.6M
netPetMar2.txt.gz 2013-01-24 03:47 2.8M
ensGene.txt.gz 2019-02-10 03:42 2.5M
genscan.txt.gz 2009-07-20 15:57 2.3M
augustusGene.txt.gz 2015-07-26 16:46 2.0M
gold.txt.gz 2009-07-20 16:06 1.3M
gap.txt.gz 2009-07-20 15:57 1.0M
microsat.txt.gz 2015-08-23 21:56 1.0M
cpgIslandExtUnmasked.txt.gz 2014-06-01 17:03 619K
cpgIslandExt.txt.gz 2009-07-20 15:58 484K
ensGtp.txt.gz 2019-02-10 03:42 327K
gbLoaded.txt.gz 2020-08-19 18:55 111K
ensemblToGeneName.txt.gz 2019-02-10 03:42 104K
ensemblSource.txt.gz 2019-02-10 03:42 96K
trackDb.txt.gz 2024-01-31 15:13 73K
trackDb_pushedout.txt.gz 2023-03-28 13:51 73K
all_mrna.txt.gz 2020-08-19 18:14 61K
refGene.txt.gz 2020-08-19 18:28 43K
refSeqAli.txt.gz 2020-08-19 18:45 40K
refFlat.txt.gz 2020-08-19 18:28 38K
mrnaOrientInfo.txt.gz 2020-08-19 18:32 31K
all_est.txt.gz 2011-04-18 07:18 17K
tRNAs.txt.gz 2012-04-16 03:06 12K
intronEst.txt.gz 2011-04-18 07:19 9.5K
tableDescriptions.txt.gz 2024-04-20 02:03 9.1K
tableList.txt.gz 2024-04-21 03:22 7.4K
estOrientInfo.txt.gz 2011-04-18 07:22 6.6K
history.txt.gz 2009-07-20 16:05 3.7K
netPonAbe2.sql 2010-12-10 11:22 2.3K
netOrnAna1.sql 2010-12-10 11:56 2.3K
netGalGal3.sql 2010-12-10 11:45 2.3K
netEquCab2.sql 2010-12-10 11:57 2.3K
netDanRer5.sql 2010-12-10 12:33 2.3K
netCanFam2.sql 2010-12-10 11:48 2.3K
netHg19.sql 2010-12-10 11:53 2.3K
xenoRefSeqAli.sql 2020-08-19 18:45 2.1K
blastHg18KG.sql 2009-07-20 16:02 2.1K
refSeqAli.sql 2020-08-19 18:45 2.1K
xenoMrna.sql 2020-08-19 18:14 2.1K
all_mrna.sql 2020-08-19 18:14 2.1K
netNeoSch1.sql 2020-07-17 10:31 2.1K
netMm39.sql 2020-11-25 07:50 2.1K
netRheMac3.sql 2012-12-02 18:39 2.1K
netPetMar2.sql 2013-01-24 03:47 2.1K
netCerSim1.sql 2013-01-29 23:26 2.1K
netXenTro9.sql 2017-12-14 12:38 2.1K
netXenTro3.sql 2019-06-02 03:26 2.1K
netMelGal5.sql 2017-03-20 09:13 2.1K
netMm10.sql 2013-10-27 18:43 2.1K
trackDb_pushedout.sql 2023-03-28 13:51 2.1K
netRn6.sql 2017-03-27 17:27 2.1K
trackDb.sql 2024-01-31 15:13 2.1K
intronEst.sql 2011-04-18 07:19 2.0K
all_est.sql 2011-04-18 07:18 2.0K
netSusScr2.sql 2010-12-10 11:57 2.0K
netPanTro3.sql 2011-06-12 11:15 2.0K
netOviAri1.sql 2011-04-25 10:01 2.0K
netOryCun2.sql 2010-12-10 11:03 2.0K
netMelGal1.sql 2011-11-06 14:42 2.0K
netLoxAfr3.sql 2011-11-21 19:12 2.0K
netFelCat4.sql 2010-12-10 11:51 2.0K
netCalJac3.sql 2010-12-10 12:29 2.0K
netBosTau7.sql 2012-06-16 20:25 2.0K
netAilMel1.sql 2010-12-10 12:33 2.0K
xenoRefGene.sql 2020-08-19 18:32 2.0K
refGene.sql 2020-08-19 18:28 1.9K
augustusGene.sql 2015-07-26 16:46 1.9K
ensGene.sql 2019-02-10 03:42 1.9K
simpleRepeat.sql 2009-07-20 16:05 1.9K
nestedRepeats.sql 2009-07-20 15:57 1.9K
nscanGene.sql 2009-07-20 16:02 1.9K
phastCons9way.sql 2010-12-10 11:03 1.9K
rmsk.sql 2009-07-20 16:02 1.9K
multiz9wayFrames.sql 2010-12-10 12:25 1.8K
mrnaOrientInfo.sql 2020-08-19 18:32 1.8K
hgFindSpec_pushedout.sql 2023-03-28 13:51 1.8K
chainPonAbe2.sql 2010-12-10 12:19 1.8K
chainOrnAna1.sql 2010-12-10 11:34 1.8K
chainGalGal3.sql 2010-12-10 11:53 1.8K
chainEquCab2.sql 2010-12-10 11:23 1.8K
chainDanRer5.sql 2010-12-10 11:02 1.8K
chainCanFam2.sql 2010-12-10 11:51 1.8K
chainHg19.sql 2010-12-10 12:25 1.8K
hgFindSpec.sql 2024-01-31 15:13 1.8K
xenoRefFlat.sql 2020-08-19 18:32 1.7K
chainNeoSch1.sql 2020-07-17 10:23 1.7K
refFlat.sql 2020-08-19 18:28 1.7K
chainMm39.sql 2020-11-25 07:47 1.7K
quality.sql 2009-07-20 15:58 1.7K
gc5Base.sql 2009-07-20 16:01 1.7K
chainRheMac3.sql 2012-12-02 18:39 1.7K
chainPetMar2.sql 2013-01-24 03:48 1.7K
chainCerSim1.sql 2013-01-29 23:32 1.7K
chainXenTro3.sql 2019-06-02 03:21 1.7K
cpgIslandExtUnmasked.sql 2014-06-01 17:03 1.7K
chainXenTro9.sql 2017-12-14 12:34 1.7K
chainMelGal5.sql 2017-03-20 09:11 1.7K
chainMm10.sql 2013-10-27 18:38 1.7K
chainRn6.sql 2017-03-27 16:45 1.7K
estOrientInfo.sql 2011-04-18 07:22 1.7K
tRNAs.sql 2012-04-16 03:06 1.7K
chainSusScr2.sql 2010-12-10 11:24 1.6K
chainPanTro3.sql 2011-06-12 11:24 1.6K
chainOviAri1.sql 2011-04-25 10:01 1.6K
chainOryCun2.sql 2010-12-10 12:27 1.6K
chainMelGal1.sql 2011-11-06 14:55 1.6K
chainLoxAfr3.sql 2011-11-21 19:08 1.6K
chainFelCat4.sql 2010-12-10 11:48 1.6K
chainCalJac3.sql 2010-12-10 11:20 1.6K
chainBosTau7.sql 2012-06-16 20:27 1.6K
chainAilMel1.sql 2010-12-10 11:02 1.6K
cpgIslandExt.sql 2009-07-20 15:58 1.6K
gbLoaded.sql 2020-08-19 18:55 1.6K
gold.sql 2009-07-20 16:06 1.6K
tableList.sql 2024-04-21 03:22 1.6K
genscan.sql 2009-07-20 15:57 1.6K
multiz9waySummary.sql 2010-12-10 11:57 1.6K
chainNeoSch1Link.sql 2020-07-17 10:30 1.6K
chainMm39Link.sql 2020-11-25 07:49 1.6K
chainRheMac3Link.sql 2012-12-02 18:42 1.6K
chainPetMar2Link.sql 2013-01-24 03:47 1.6K
chainCerSim1Link.sql 2013-01-29 23:26 1.6K
chainXenTro3Link.sql 2019-06-02 03:22 1.5K
chainXenTro9Link.sql 2017-12-14 12:35 1.5K
chainPonAbe2Link.sql 2010-12-10 11:36 1.5K
chainOrnAna1Link.sql 2010-12-10 11:49 1.5K
chainMelGal5Link.sql 2017-03-20 09:11 1.5K
chainGalGal3Link.sql 2010-12-10 10:57 1.5K
chainEquCab2Link.sql 2010-12-10 12:05 1.5K
chainDanRer5Link.sql 2010-12-10 12:30 1.5K
chainCanFam2Link.sql 2010-12-10 11:00 1.5K
multiz9way.sql 2010-12-10 11:22 1.5K
chainMm10Link.sql 2013-10-27 18:38 1.5K
chainHg19Link.sql 2010-12-10 11:25 1.5K
chainRn6Link.sql 2017-03-27 16:49 1.5K
cytoBandIdeo.sql 2013-04-28 19:07 1.5K
gap.sql 2009-07-20 15:57 1.5K
phastConsElements9way.sql 2010-12-10 11:22 1.5K
microsat.sql 2015-08-23 21:56 1.5K
chainSusScr2Link.sql 2010-12-10 11:45 1.5K
chainPanTro3Link.sql 2011-06-12 11:15 1.5K
chainOviAri1Link.sql 2011-04-25 09:58 1.5K
chainOryCun2Link.sql 2010-12-10 11:08 1.5K
chainMelGal1Link.sql 2011-11-06 14:53 1.5K
chainLoxAfr3Link.sql 2011-11-21 19:12 1.5K
chainFelCat4Link.sql 2010-12-10 11:51 1.5K
chainCalJac3Link.sql 2010-12-10 11:03 1.5K
chainBosTau7Link.sql 2012-06-16 19:47 1.5K
chainAilMel1Link.sql 2010-12-10 12:31 1.5K
tableDescriptions.sql 2024-04-20 02:03 1.5K
history.sql 2009-07-20 16:05 1.4K
chromAlias.sql 2017-09-03 05:42 1.4K
ensGtp.sql 2019-02-10 03:42 1.4K
bigFiles.sql 2024-04-21 03:22 1.4K
ensemblToGeneName.sql 2019-02-10 03:42 1.4K
grp.sql 2014-03-02 04:14 1.4K
windowmaskerSdust.sql 2009-07-20 15:59 1.4K
ensemblSource.sql 2019-02-10 03:42 1.4K
ensPep.sql 2019-02-10 03:42 1.3K
extFile.sql 2009-07-20 16:05 1.3K
chromInfo.sql 2009-07-20 15:58 1.2K
genscanPep.sql 2009-07-20 15:58 1.2K
nscanPep.sql 2009-07-20 16:05 1.1K
hgFindSpec.txt.gz 2024-01-31 15:13 1.0K
hgFindSpec_pushedout.txt.gz 2023-03-28 13:51 1.0K
extFile.txt.gz 2009-07-20 16:05 223
grp.txt.gz 2014-03-02 04:14 208
chromAlias.txt.gz 2017-09-03 05:42 205
chromInfo.txt.gz 2009-07-20 15:58 164
cytoBandIdeo.txt.gz 2013-04-28 19:07 155
bigFiles.txt.gz 2024-04-21 03:22 33