This directory contains a dump of the UCSC genome annotation 
database for the Oct. 2006 assembly of the opossum genome (UCSC
version monDom5) from the Broad Institute at MIT and Harvard.

The directory is updated nightly. The .txt.gz files contain the 
database tables in a tab-delimited format compressed with gzip.  
The .sql files contain the MySQL commands used to create the tables.  
To see descriptions of the tables underlying Genome Browser annotation
tracks, select the table in the Table Browser:
  http://genome.ucsc.edu/cgi-bin/hgTables?db=monDom5
and click the "describe table schema" button.  There is also a "view
table schema" link on the configuration page for each track.

If you plan to download a large file or multiple files from 
this directory, we recommend that you use ftp rather than 
downloading the files via our website. To do so, ftp to 
hgdownload.cse.ucsc.edu, then go to the directory 
goldenPath/monDom5/database. To download multiple files, 
use the "mget" command:

    mget <filename1> <filename2> ...
    - or -
    mget -a (to download all the files in the directory) 

-----------------------------------------------------------
All the tables in this directory are freely usable for any 
purpose. The opossum sequence is made freely available before scientific 
publication with the following understanding: 

1. The data may be freely downloaded, used in analyses, and repackaged 
   in databases. 
2. Users are free to use the data in scientific papers analyzing 
   particular genes and regions if the providers of these data (The
   Broad Institute) are properly acknowledged. 
3. The centers producing the data reserve the right to publish the 
   initial large-scale analyses of the data set, including large-scale 
   identification of regions of evolutionary conservation and large-scale 
   genomic assembly.  Large-scale refers to regions with size on the order 
   of a chromosome (that is, 30 Mb or more). 
4. Any redistribution of the data should carry this notice. 

      Name                         Last modified      Size  Description
Parent Directory - all_est.sql 2011-04-18 07:18 2.0K all_est.txt.gz 2011-04-18 07:18 17K all_mrna.sql 2020-08-19 18:14 2.1K all_mrna.txt.gz 2020-08-19 18:14 61K augustusGene.sql 2015-07-26 16:46 1.9K augustusGene.txt.gz 2015-07-26 16:46 2.0M bigFiles.sql 2021-05-16 03:06 1.4K bigFiles.txt.gz 2021-05-16 03:06 33 blastHg18KG.sql 2009-07-20 16:02 2.1K blastHg18KG.txt.gz 2009-07-20 16:02 3.6M chainAilMel1.sql 2010-12-10 11:02 1.6K chainAilMel1.txt.gz 2010-12-10 11:02 33M chainAilMel1Link.sql 2010-12-10 12:31 1.5K chainAilMel1Link.txt.gz 2010-12-10 12:31 213M chainBosTau7.sql 2012-06-16 20:27 1.6K chainBosTau7.txt.gz 2012-06-16 20:30 250M chainBosTau7Link.sql 2012-06-16 19:47 1.5K chainBosTau7Link.txt.gz 2012-06-16 19:57 776M chainCalJac3.sql 2010-12-10 11:20 1.6K chainCalJac3.txt.gz 2010-12-10 11:21 272M chainCalJac3Link.sql 2010-12-10 11:03 1.5K chainCalJac3Link.txt.gz 2010-12-10 11:05 758M chainCanFam2.sql 2010-12-10 11:51 1.8K chainCanFam2.txt.gz 2010-12-10 11:51 39M chainCanFam2Link.sql 2010-12-10 11:00 1.5K chainCanFam2Link.txt.gz 2010-12-10 11:01 330M chainCerSim1.sql 2013-01-29 23:32 1.7K chainCerSim1.txt.gz 2013-01-29 23:32 253M chainCerSim1Link.sql 2013-01-29 23:26 1.6K chainCerSim1Link.txt.gz 2013-01-29 23:28 1.0G chainDanRer5.sql 2010-12-10 11:02 1.8K chainDanRer5.txt.gz 2010-12-10 11:02 19M chainDanRer5Link.sql 2010-12-10 12:30 1.5K chainDanRer5Link.txt.gz 2010-12-10 12:30 98M chainEquCab2.sql 2010-12-10 11:23 1.8K chainEquCab2.txt.gz 2010-12-10 11:23 254M chainEquCab2Link.sql 2010-12-10 12:05 1.5K chainEquCab2Link.txt.gz 2010-12-10 12:07 1.0G chainFelCat4.sql 2010-12-10 11:48 1.6K chainFelCat4.txt.gz 2010-12-10 11:48 28M chainFelCat4Link.sql 2010-12-10 11:51 1.5K chainFelCat4Link.txt.gz 2010-12-10 11:52 165M chainGalGal3.sql 2010-12-10 11:53 1.8K chainGalGal3.txt.gz 2010-12-10 11:53 40M chainGalGal3Link.sql 2010-12-10 10:57 1.5K chainGalGal3Link.txt.gz 2010-12-10 10:58 144M chainHg19.sql 2010-12-10 12:25 1.8K chainHg19.txt.gz 2010-12-10 12:26 340M chainHg19Link.sql 2010-12-10 11:25 1.5K chainHg19Link.txt.gz 2010-12-10 11:28 1.2G chainLoxAfr3.sql 2011-11-21 19:08 1.6K chainLoxAfr3.txt.gz 2011-11-21 19:09 420M chainLoxAfr3Link.sql 2011-11-21 19:12 1.5K chainLoxAfr3Link.txt.gz 2011-11-21 19:15 1.1G chainMelGal1.sql 2011-11-06 14:55 1.6K chainMelGal1.txt.gz 2011-11-06 14:55 7.9M chainMelGal1Link.sql 2011-11-06 14:53 1.5K chainMelGal1Link.txt.gz 2011-11-06 14:53 36M chainMelGal5.sql 2017-03-20 09:11 1.7K chainMelGal5.txt.gz 2017-03-20 09:11 12M chainMelGal5Link.sql 2017-03-20 09:11 1.5K chainMelGal5Link.txt.gz 2017-03-20 09:11 42M chainMm10.sql 2013-10-27 18:38 1.7K chainMm10.txt.gz 2013-10-27 18:38 198M chainMm10Link.sql 2013-10-27 18:38 1.5K chainMm10Link.txt.gz 2013-10-27 18:40 1.1G chainMm39.sql 2020-11-25 07:47 1.7K chainMm39.txt.gz 2020-11-25 07:47 41M chainMm39Link.sql 2020-11-25 07:49 1.6K chainMm39Link.txt.gz 2020-11-25 07:49 240M chainNeoSch1.sql 2020-07-17 10:23 1.7K chainNeoSch1.txt.gz 2020-07-17 10:23 318M chainNeoSch1Link.sql 2020-07-17 10:30 1.5K chainNeoSch1Link.txt.gz 2020-07-17 10:30 1.1G chainOrnAna1.sql 2010-12-10 11:34 1.8K chainOrnAna1.txt.gz 2010-12-10 11:34 88M chainOrnAna1Link.sql 2010-12-10 11:49 1.5K chainOrnAna1Link.txt.gz 2010-12-10 11:49 327M chainOryCun2.sql 2010-12-10 12:27 1.6K chainOryCun2.txt.gz 2010-12-10 12:28 337M chainOryCun2Link.sql 2010-12-10 11:08 1.5K chainOryCun2Link.txt.gz 2010-12-10 11:10 966M chainOviAri1.sql 2011-04-25 10:01 1.6K chainOviAri1.txt.gz 2011-04-25 10:01 33M chainOviAri1Link.sql 2011-04-25 09:58 1.5K chainOviAri1Link.txt.gz 2011-04-25 09:59 114M chainPanTro3.sql 2011-06-12 11:24 1.6K chainPanTro3.txt.gz 2011-06-12 11:25 344M chainPanTro3Link.sql 2011-06-12 11:15 1.5K chainPanTro3Link.txt.gz 2011-06-12 11:18 1.2G chainPetMar2.sql 2013-01-24 03:48 1.7K chainPetMar2.txt.gz 2013-01-24 03:48 13M chainPetMar2Link.sql 2013-01-24 03:47 1.6K chainPetMar2Link.txt.gz 2013-01-24 03:47 43M chainPonAbe2.sql 2010-12-10 12:19 1.8K chainPonAbe2.txt.gz 2010-12-10 12:20 430M chainPonAbe2Link.sql 2010-12-10 11:36 1.5K chainPonAbe2Link.txt.gz 2010-12-10 11:39 1.2G chainRheMac3.sql 2012-12-02 18:39 1.7K chainRheMac3.txt.gz 2012-12-02 18:40 559M chainRheMac3Link.sql 2012-12-02 18:42 1.6K chainRheMac3Link.txt.gz 2012-12-02 18:44 1.3G chainRn6.sql 2017-03-27 16:45 1.7K chainRn6.txt.gz 2017-03-27 16:46 103M chainRn6Link.sql 2017-03-27 16:49 1.5K chainRn6Link.txt.gz 2017-03-27 16:57 749M chainSusScr2.sql 2010-12-10 11:24 1.6K chainSusScr2.txt.gz 2010-12-10 11:25 153M chainSusScr2Link.sql 2010-12-10 11:45 1.5K chainSusScr2Link.txt.gz 2010-12-10 11:46 520M chainXenTro3.sql 2019-06-02 03:21 1.7K chainXenTro3.txt.gz 2019-06-02 03:21 223M chainXenTro3Link.sql 2019-06-02 03:22 1.5K chainXenTro3Link.txt.gz 2019-06-02 03:23 788M chainXenTro9.sql 2017-12-14 12:34 1.7K chainXenTro9.txt.gz 2017-12-14 12:34 230M chainXenTro9Link.sql 2017-12-14 12:35 1.5K chainXenTro9Link.txt.gz 2017-12-14 12:36 809M chromAlias.sql 2017-09-03 05:42 1.4K chromAlias.txt.gz 2017-09-03 05:42 205 chromInfo.sql 2009-07-20 15:58 1.2K chromInfo.txt.gz 2009-07-20 15:58 164 cpgIslandExt.sql 2009-07-20 15:58 1.6K cpgIslandExt.txt.gz 2009-07-20 15:58 484K cpgIslandExtUnmasked.sql 2014-06-01 17:03 1.7K cpgIslandExtUnmasked.txt.gz 2014-06-01 17:03 619K cytoBandIdeo.sql 2013-04-28 19:07 1.5K cytoBandIdeo.txt.gz 2013-04-28 19:07 155 ensGene.sql 2019-02-10 03:42 1.9K ensGene.txt.gz 2019-02-10 03:42 2.5M ensGtp.sql 2019-02-10 03:42 1.4K ensGtp.txt.gz 2019-02-10 03:42 327K ensPep.sql 2019-02-10 03:42 1.3K ensPep.txt.gz 2019-02-10 03:42 6.4M ensemblSource.sql 2019-02-10 03:42 1.4K ensemblSource.txt.gz 2019-02-10 03:42 96K ensemblToGeneName.sql 2019-02-10 03:42 1.4K ensemblToGeneName.txt.gz 2019-02-10 03:42 104K estOrientInfo.sql 2011-04-18 07:22 1.7K estOrientInfo.txt.gz 2011-04-18 07:22 6.6K extFile.sql 2009-07-20 16:05 1.3K extFile.txt.gz 2009-07-20 16:05 223 gap.sql 2009-07-20 15:57 1.5K gap.txt.gz 2009-07-20 15:57 1.0M gbLoaded.sql 2020-08-19 18:55 1.6K gbLoaded.txt.gz 2020-08-19 18:55 111K gc5Base.sql 2009-07-20 16:01 1.7K gc5Base.txt.gz 2009-07-20 16:02 14M genscan.sql 2009-07-20 15:57 1.6K genscan.txt.gz 2009-07-20 15:57 2.3M genscanPep.sql 2009-07-20 15:58 1.2K genscanPep.txt.gz 2009-07-20 15:58 7.9M gold.sql 2009-07-20 16:06 1.6K gold.txt.gz 2009-07-20 16:06 1.3M grp.sql 2014-03-02 04:14 1.4K grp.txt.gz 2014-03-02 04:14 208 hgFindSpec.sql 2021-03-26 09:06 1.8K hgFindSpec.txt.gz 2021-03-26 09:06 912 history.sql 2009-07-20 16:05 1.4K history.txt.gz 2009-07-20 16:05 3.7K intronEst.sql 2011-04-18 07:19 2.0K intronEst.txt.gz 2011-04-18 07:19 9.5K microsat.sql 2015-08-23 21:56 1.5K microsat.txt.gz 2015-08-23 21:56 1.0M mrnaOrientInfo.sql 2020-08-19 18:32 1.8K mrnaOrientInfo.txt.gz 2020-08-19 18:32 31K multiz9way.sql 2010-12-10 11:22 1.5K multiz9way.txt.gz 2010-12-10 11:22 93M multiz9wayFrames.sql 2010-12-10 12:25 1.8K multiz9wayFrames.txt.gz 2010-12-10 12:25 18M multiz9waySummary.sql 2010-12-10 11:57 1.6K multiz9waySummary.txt.gz 2010-12-10 11:57 33M nestedRepeats.sql 2009-07-20 15:57 1.9K nestedRepeats.txt.gz 2009-07-20 15:57 23M netAilMel1.sql 2010-12-10 12:33 2.0K netAilMel1.txt.gz 2010-12-10 12:33 21M netBosTau7.sql 2012-06-16 20:25 2.0K netBosTau7.txt.gz 2012-06-16 20:26 20M netCalJac3.sql 2010-12-10 12:29 2.0K netCalJac3.txt.gz 2010-12-10 12:30 21M netCanFam2.sql 2010-12-10 11:48 2.3K netCanFam2.txt.gz 2010-12-10 11:48 26M netCerSim1.sql 2013-01-29 23:26 2.1K netCerSim1.txt.gz 2013-01-29 23:26 29M netDanRer5.sql 2010-12-10 12:33 2.3K netDanRer5.txt.gz 2010-12-10 12:33 8.8M netEquCab2.sql 2010-12-10 11:57 2.3K netEquCab2.txt.gz 2010-12-10 11:57 28M netFelCat4.sql 2010-12-10 11:51 2.0K netFelCat4.txt.gz 2010-12-10 11:51 18M netGalGal3.sql 2010-12-10 11:45 2.3K netGalGal3.txt.gz 2010-12-10 11:45 9.3M netHg19.sql 2010-12-10 11:53 2.3K netHg19.txt.gz 2010-12-10 11:53 34M netLoxAfr3.sql 2011-11-21 19:12 2.0K netLoxAfr3.txt.gz 2011-11-21 19:12 22M netMelGal1.sql 2011-11-06 14:42 2.0K netMelGal1.txt.gz 2011-11-06 14:42 8.5M netMelGal5.sql 2017-03-20 09:13 2.1K netMelGal5.txt.gz 2017-03-20 09:13 8.5M netMm10.sql 2013-10-27 18:43 2.1K netMm10.txt.gz 2013-10-27 18:44 23M netMm39.sql 2020-11-25 07:50 2.1K netMm39.txt.gz 2020-11-25 07:50 15M netNeoSch1.sql 2020-07-17 10:31 2.1K netNeoSch1.txt.gz 2020-07-17 10:31 33M netOrnAna1.sql 2010-12-10 11:56 2.3K netOrnAna1.txt.gz 2010-12-10 11:56 23M netOryCun2.sql 2010-12-10 11:03 2.0K netOryCun2.txt.gz 2010-12-10 11:03 18M netOviAri1.sql 2011-04-25 10:01 2.0K netOviAri1.txt.gz 2011-04-25 10:01 16M netPanTro3.sql 2011-06-12 11:15 2.0K netPanTro3.txt.gz 2011-06-12 11:15 34M netPetMar2.sql 2013-01-24 03:47 2.1K netPetMar2.txt.gz 2013-01-24 03:47 2.8M netPonAbe2.sql 2010-12-10 11:22 2.3K netPonAbe2.txt.gz 2010-12-10 11:23 28M netRheMac3.sql 2012-12-02 18:39 2.1K netRheMac3.txt.gz 2012-12-02 18:39 21M netRn6.sql 2017-03-27 17:27 2.1K netRn6.txt.gz 2017-03-27 17:27 24M netSusScr2.sql 2010-12-10 11:57 2.0K netSusScr2.txt.gz 2010-12-10 11:57 17M netXenTro3.sql 2019-06-02 03:26 2.1K netXenTro3.txt.gz 2019-06-02 03:26 7.5M netXenTro9.sql 2017-12-14 12:38 2.1K netXenTro9.txt.gz 2017-12-14 12:38 7.8M nscanGene.sql 2009-07-20 16:02 1.9K nscanGene.txt.gz 2009-07-20 16:02 3.6M nscanPep.sql 2009-07-20 16:05 1.1K nscanPep.txt.gz 2009-07-20 16:05 12M phastCons9way.sql 2010-12-10 11:03 1.9K phastCons9way.txt.gz 2010-12-10 11:03 76M phastConsElements9way.sql 2010-12-10 11:22 1.5K phastConsElements9way.txt.gz 2010-12-10 11:22 7.8M quality.sql 2009-07-20 15:58 1.7K quality.txt.gz 2009-07-20 15:59 64M refFlat.sql 2020-08-19 18:28 1.7K refFlat.txt.gz 2020-08-19 18:28 38K refGene.sql 2020-08-19 18:28 1.9K refGene.txt.gz 2020-08-19 18:28 43K refSeqAli.sql 2020-08-19 18:45 2.1K refSeqAli.txt.gz 2020-08-19 18:45 40K rmsk.sql 2009-07-20 16:02 1.9K rmsk.txt.gz 2009-07-20 16:03 199M simpleRepeat.sql 2009-07-20 16:05 1.9K simpleRepeat.txt.gz 2009-07-20 16:05 26M tRNAs.sql 2012-04-16 03:06 1.7K tRNAs.txt.gz 2012-04-16 03:06 12K tableDescriptions.sql 2021-03-13 06:37 1.4K tableDescriptions.txt.gz 2021-03-13 06:37 9.0K tableList.sql 2021-05-16 03:06 1.6K tableList.txt.gz 2021-05-16 03:06 7.2K trackDb.sql 2021-03-26 09:06 2.1K trackDb.txt.gz 2021-03-26 09:06 67K windowmaskerSdust.sql 2009-07-20 15:59 1.4K windowmaskerSdust.txt.gz 2009-07-20 16:00 204M xenoMrna.sql 2020-08-19 18:14 2.1K xenoMrna.txt.gz 2020-08-19 18:14 213M xenoRefFlat.sql 2020-08-19 18:32 1.7K xenoRefFlat.txt.gz 2020-08-19 18:32 23M xenoRefGene.sql 2020-08-19 18:32 1.9K xenoRefGene.txt.gz 2020-08-19 18:32 26M xenoRefSeqAli.sql 2020-08-19 18:45 2.1K xenoRefSeqAli.txt.gz 2020-08-19 18:45 25M