This directory contains a dump of the UCSC genome annotation 
database for the Oct. 2004 assembly of the opossum genome (UCSC
version monDom1) from the Broad Institute at MIT and Harvard.

The directory is updated nightly. The .txt.gz files contain the 
database tables in a tab-delimited format compressed with gzip.  
The .sql files contain the MySQL commands used to create the tables.  
To see descriptions of the tables underlying Genome Browser annotation
tracks, select the table in the Table Browser:
  http://genome.ucsc.edu/cgi-bin/hgTables?db=monDom1
and click the "describe table schema" button.  There is also a "view
table schema" link on the configuration page for each track.

If you plan to download a large file or multiple files from 
this directory, we recommend that you use ftp rather than 
downloading the files via our website. To do so, ftp to 
hgdownload.cse.ucsc.edu, then go to the directory 
goldenPath/monDom1/database. To download multiple files, 
use the "mget" command:

    mget <filename1> <filename2> ...
    - or -
    mget -a (to download all the files in the directory) 

All the tables in this directory are freely usable for any 
purpose. The opossum sequence is made freely available before scientific 
publication with the following understanding: 

1. The data may be freely downloaded, used in analyses, and repackaged 
   in databases. 
2. Users are free to use the data in scientific papers analyzing 
   particular genes and regions if the providers of these data (The
   Broad Institute) are properly acknowledged. 
3. The centers producing the data reserve the right to publish the 
   initial large-scale analyses of the data set, including large-scale 
   identification of regions of evolutionary conservation and large-scale 
   genomic assembly.  Large-scale refers to regions with size on the order 
   of a chromosome (that is, 30 Mb or more). 
4. Any redistribution of the data should carry this notice. 

      Name                        Last modified      Size  Description
Parent Directory - all_mrna.sql 2019-03-17 11:24 2.1K all_mrna.txt.gz 2019-03-17 11:24 65K augustusGene.sql 2015-07-26 16:38 1.9K augustusGene.txt.gz 2015-07-26 16:38 2.0M bigFiles.sql 2021-05-16 03:08 1.4K bigFiles.txt.gz 2021-05-16 03:08 33 blastHg17KG.sql 2013-10-01 12:48 1.3K blastHg17KG.txt.gz 2005-01-15 05:36 4.3M chainDanRer2.sql 2013-10-01 12:48 886 chainDanRer2.txt.gz 2005-01-15 05:36 4.7M chainDanRer2Link.sql 2013-10-01 12:48 585 chainDanRer2Link.txt.gz 2005-01-15 05:37 46M chainGalGal2.sql 2013-10-01 12:48 886 chainGalGal2.txt.gz 2005-01-15 05:37 8.7M chainGalGal2Link.sql 2013-10-01 12:48 585 chainGalGal2Link.txt.gz 2005-01-15 05:38 67M chainHg17.sql 2013-10-01 12:48 880 chainHg17.txt.gz 2005-01-15 05:39 40M chainHg17Link.sql 2013-10-01 12:48 579 chainHg17Link.txt.gz 2005-01-15 05:44 476M chainMm6.sql 2013-10-01 12:48 878 chainMm6.txt.gz 2005-05-05 06:37 34M chainMm6Link.sql 2013-10-01 12:48 577 chainMm6Link.txt.gz 2005-05-05 06:43 369M chromInfo.sql 2013-10-01 12:48 396 chromInfo.txt.gz 2005-01-15 05:57 105K contigAcc.sql 2013-10-01 12:48 343 contigAcc.txt.gz 2005-03-24 05:08 546K cpgIslandExt.sql 2013-10-01 12:48 751 cpgIslandExt.txt.gz 2005-01-15 05:57 545K cpgIslandExtUnmasked.sql 2014-06-01 16:52 1.7K cpgIslandExtUnmasked.txt.gz 2014-06-01 16:52 594K danRer2_netBlastz.sql 2013-10-01 12:48 675 danRer2_netBlastz.txt.gz 2005-01-20 04:51 2.2M extFile.sql 2013-10-01 12:48 445 extFile.txt.gz 2005-01-15 05:57 182 galGal2_netBlastz.sql 2013-10-01 12:48 675 galGal2_netBlastz.txt.gz 2005-01-20 04:51 4.2M gap.sql 2013-10-01 12:48 722 gap.txt.gz 2005-01-15 05:57 1.1M gbDelete_tmp.sql 2009-08-19 15:43 1.3K gbDelete_tmp.txt.gz 2009-08-19 15:43 171K gbLoaded.sql 2020-08-22 12:20 1.6K gbLoaded.txt.gz 2020-08-22 12:20 15K gc5Base.sql 2013-10-01 12:48 890 gc5Base.txt.gz 2005-01-15 05:58 14M genscan.sql 2013-10-01 12:48 748 genscan.txt.gz 2005-01-15 05:58 2.4M genscanPep.sql 2013-10-01 12:48 330 genscanPep.txt.gz 2005-01-15 05:58 8.8M gold.sql 2013-10-01 12:48 799 gold.txt.gz 2005-01-15 05:59 1.8M grp.sql 2014-03-02 04:14 1.4K grp.txt.gz 2014-03-02 04:14 223 hg17_netBlastz.sql 2013-10-01 12:48 669 hg17_netBlastz.txt.gz 2005-01-20 04:52 11M hgFindSpec.sql 2020-10-25 08:12 1.7K hgFindSpec.txt.gz 2020-10-25 08:12 683 history.sql 2013-10-01 12:48 537 history.txt.gz 2005-01-15 05:59 508 microsat.sql 2006-08-03 07:52 1.3K microsat.txt.gz 2006-08-03 07:52 1.0M mm5_netBlastz.sql 2013-10-01 12:48 667 mm5_netBlastz.txt.gz 2005-01-20 04:52 7.3M mostConserved.sql 2013-10-01 12:48 650 mostConserved.txt.gz 2005-01-15 05:59 19M mrnaOrientInfo.sql 2019-03-17 11:24 1.8K mrnaOrientInfo.txt.gz 2019-03-17 11:24 14K multiz5way.sql 2013-10-01 12:48 661 multiz5way.txt.gz 2005-01-15 05:59 15M netDanRer2.sql 2013-10-01 12:48 1.3K netDanRer2.txt.gz 2005-01-15 06:00 6.0M netGalGal2.sql 2013-10-01 12:48 1.3K netGalGal2.txt.gz 2005-01-15 06:00 9.4M netHg17.sql 2013-10-01 12:48 1.3K netHg17.txt.gz 2005-01-15 06:01 35M netMm6.sql 2013-10-01 12:48 1.3K netMm6.txt.gz 2005-05-05 06:48 22M phastCons5.sql 2013-10-01 12:48 898 phastCons5.txt.gz 2005-01-20 04:50 30M quality.sql 2013-10-01 12:48 890 quality.txt.gz 2005-01-15 06:04 67M rmsk.sql 2013-10-01 12:48 1.1K rmsk.txt.gz 2005-01-15 06:10 446M simpleRepeat.sql 2013-10-01 12:48 1.1K simpleRepeat.txt.gz 2005-01-15 06:14 16M tableDescriptions.sql 2019-07-21 03:43 1.4K tableDescriptions.txt.gz 2019-07-21 03:43 5.5K tableList.sql 2021-05-16 03:08 1.6K tableList.txt.gz 2021-05-16 03:08 3.0K trackDb.sql 2020-10-25 08:12 2.0K trackDb.txt.gz 2020-10-25 08:12 24K xenoMrna.sql 2016-02-21 20:04 2.4K xenoMrna.txt.gz 2016-02-21 20:04 290M xenoRefFlat.sql 2020-08-22 12:05 1.7K xenoRefFlat.txt.gz 2020-08-22 12:05 31M xenoRefGene.sql 2020-08-22 12:05 1.9K xenoRefGene.txt.gz 2020-08-22 12:05 34M xenoRefSeqAli.sql 2020-08-22 12:05 2.1K xenoRefSeqAli.txt.gz 2020-08-22 12:05 32M