This directory contains compressed multiple alignments of the 
following assemblies to the mouse genome (mm5, May 2004):
  - rat (rn3, Jun. 2003)
  - human (hg17, May 2004) 
  - dog (canFam1, Jul. 2004) 
  - chicken (galGal2, Feb. 2004) 

Files included in this directory:
  - chr*.maf.gz files: each contain all the alignments to that 
    particular mouse chromosome.  

For a description of multiple alignment format (MAF), see
http://genome.ucsc.edu/goldenPath/help/maf.html.

---------------------------------------------------------------
If you plan to download a large file or multiple files from this 
directory, we recommend that you use ftp rather than downloading the 
files via our website. To do so, ftp to hgdownload.cse.ucsc.edu, 
then go to the directory goldenPath/mm5/multiz5way. To download 
multiple files, use the "mget" command:

    mget <filename1> <filename2> ...
    - or -
    mget -a (to download all the files in the directory) 

All the files in this directory are freely usable for any 
purpose. For data use restrictions regarding the dog and chicken 
genomes, see http://genome.ucsc.edu/goldenPath/credits.html.

      Name                    Last modified      Size  Description
Parent Directory - chr1.maf.gz 2004-08-03 11:30 155M chr1_random.maf.gz 2004-08-03 11:56 803K chr2.maf.gz 2004-08-03 12:01 158M chr2_random.maf.gz 2004-08-03 12:01 5.3M chr3.maf.gz 2004-08-03 12:04 124M chr3_random.maf.gz 2004-08-03 12:04 1.4M chr4.maf.gz 2004-08-03 12:08 125M chr4_random.maf.gz 2004-08-03 12:08 5.3M chr5.maf.gz 2004-08-03 12:11 118M chr5_random.maf.gz 2004-08-03 12:11 1.4M chr6.maf.gz 2004-08-03 12:15 120M chr6_random.maf.gz 2004-08-03 12:15 858K chr7.maf.gz 2004-08-03 12:18 101M chr7_random.maf.gz 2004-08-03 12:18 3.7M chr8.maf.gz 2004-08-03 12:21 103M chr8_random.maf.gz 2004-08-03 12:21 808K chr9.maf.gz 2004-08-03 12:23 105M chr9_random.maf.gz 2004-08-03 12:23 382K chr10.maf.gz 2004-08-03 11:33 105M chr10_random.maf.gz 2004-08-03 11:33 267K chr11.maf.gz 2004-08-03 11:36 107M chr12.maf.gz 2004-08-03 11:39 94M chr12_random.maf.gz 2004-08-03 11:39 1.2M chr13.maf.gz 2004-08-03 11:42 91M chr13_random.maf.gz 2004-08-03 11:42 1.0M chr14.maf.gz 2004-08-03 11:45 95M chr14_random.maf.gz 2004-08-03 11:45 1.1M chr15.maf.gz 2004-08-03 11:48 83M chr15_random.maf.gz 2004-08-03 11:48 358K chr16.maf.gz 2004-08-03 11:50 80M chr16_random.maf.gz 2004-08-03 11:50 774K chr17.maf.gz 2004-08-03 11:52 71M chr17_random.maf.gz 2004-08-03 11:52 654K chr18.maf.gz 2004-08-03 11:54 74M chr18_random.maf.gz 2004-08-03 11:54 699K chr19.maf.gz 2004-08-03 11:56 52M chr19_random.maf.gz 2004-08-03 11:56 371K chrM.maf.gz 2004-08-03 12:23 29K chrUn_random.maf.gz 2004-08-03 12:24 26M chrX.maf.gz 2004-08-03 12:27 97M chrX_random.maf.gz 2004-08-03 12:27 4.1M chrY.maf.gz 2004-08-03 12:27 14M chrY_random.maf.gz 2004-08-03 12:27 164K md5sum.txt 2004-08-03 12:32 2.1K