Markers vs. Genome Sequence Assembly

ctgX_BCM_1 ctgX_BCM_2 ctgX_BCM_3 ctgX_BCM_4 ctgX_BCM_5 ctgX_BCM_6 ctgX_BCM_7 ctgX_BCM_8 ctgX_BCM_9 ctgX_BCM_10 ctgX_BCM_11 ctgChr_Xctg40 ctgX_WUGSC_1 ctgX_WUGSC_2 ctgX_WUGSC_3 ctgX_WUGSC_4 ctgX_BCM_12 ctgX_BCM_13 ctgX_BCM_14 ctgX_BCM_15 ctgX_BCM_16 ctgX_BCM_17 ctgChr_Xctg171 ctgChr_Xctg198 ctgChr_Xctg26 ctgChr_Xctg201 ctgChr_Xctg264 ctgChr_Xctg320 ctgChr_Xctg45 ctgChr_Xctg19 ctgChr_Xctg250 ctgChr_Xctg63 ctgChr_Xctg99 ctgChr_Xctg18 ctgChr_Xctg2 ctgChr_Xctg20 ctgChr_Xctg20B ctgChr_Xctg3 ctgChr_Xctg104 ctgChr_Xctg100 ctgChr_Xctg23 ctgChr_Xctg178 ctgChr_Xctg178B ctgX_BCM_18 ctgX_BCM_19 ctgX_BCM_20 ctgX_BCM_21 ctgX_IMB_3 ctgX_IMB_5