Markers vs. Genome Sequence Assembly

ctgChr_9ctg1006 ctgChr_9ctg2747 ctgChr_9ctg38 ctgChr_9ctg2717 ctgChr_9ctg73 ctgChr_9ctg39 ctgChr_9ctg40 ctgChr_9ctg1543 ctgChr_9ctg1000 ctgChr_9ctg1001 ctgChr_9ctg1002 ctgChr_9ctg1003 ctgChr_9ctg1004 ctgChr_9ctg1005 ctgChr_9ctg280 ctgChr_9ctg46 ctgChr_9ctg1007 ctgChr_9ctg100 ctgChr_9ctg1526 ctgChr_9ctg10 ctgChr_9ctg343