Markers vs. Genome Sequence Assembly

ctgChr_9ctg99 ctgChr_9ctg1006 ctgChr_9ctg2747 ctgChr_9ctg38 ctgChr_9ctg2717 ctgChr_9ctg73 ctgChr_9ctg39 ctgChr_9ctg40 ctgChr_9ctg1543 ctgChr_9ctg1000 ctgChr_9ctg1001 ctgChr_9ctg1002 ctgChr_9ctg1003 ctgChr_9ctg1004 ctgChr_9ctg1005 ctgChr_9ctg280 ctgChr_9ctg46 ctgChr_9ctg1007 ctgChr_9ctg100 ctgChr_9ctg1526 ctgChr_9ctg10 ctgChr_9ctg343 ctgChr_9ctg1789 ctgChr_9ctg1926 ctgChr_9ctg36 ctgChr_9ctg9 ctgChr_9ctg13 ctgChr_9ctg1993 ctgChr_9ctg1588 ctgChr_9ctg6 ctgChr_9ctg1820 ctgChr_9ctg1958 ctgChr_9ctg2069 ctgChr_9ctg2266