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The purpose of the Assembly Summary
pages, is to provide a high-level view of the construction
of each map against various types of information. Currently,
we have comparisons of the draft sequence against various STS
maps in both tabular
form and visually as scatter
plots. We also have placements of BAC end pairs, base pair
overlap counts with
other accessions in the freeze.
Summary pages are available for full chromosomes, and for
individual contigs. On each page is a table which lists the
available information for each accession in a contig. The
table has the following columns:
- Contig - name of the contig
- Accession - GenBank accession for clone.
- Start - base pair in chromosome where clone starts.
- Phs - phase of sequence in freeze.
- Genetic Maps - lists number of rows of each color for this accession
in both the Genethon and Marshfield genetic maps.
- YAC Map - lists number of rows of each color for this accession
in both the Whitehead Institute YAC map.
- RH Maps - lists number of rows of each color for this accession
in the GeneMap99 GB4, GenMap99 G3, and Whitehead Institute
radiation hybridization (RH) maps.
- BAC ends - number of rows of each color for this accession
where each row represents that one end in a BAC end pair is
placed on this accession.
- Overlap - the top number of bases matched under the strictest
criteria in which a match is found between this accession and the one
immediately following. Following are the number of rows of each
color for this accession where each row indicates a separate
overlap match with another clone.
Cells in a row assume the color of the majority of lines for
that accession in the corresponding table except for the
overlap column which assumes the color of the line with the
strongest overlap for the accession excluding yellow
lines. For definitions of the colors for each column, see the
Cell color code table on this page, or the corresponding
descriptions of those tables (Genetic, YAC, RH Maps, BAC ends, Overlap.) Clicking on the
link inside of a cell for an accession will cause the table
from the corresponding column to be displayed for the entire
contig with the accession at the top of the page or the bottom
of the contig table if the accession is near the end.
The pages are designed so that you can view one contig at a
time, or all contigs for a single chromosome at once. A
header frame is provided on each page to allow for easier
navigation through the table, to provide a reference for the
meanings of the line colors, and to display the table column
names for convenience when viewing longer contigs.
Warning: Many of the pages contain very large tables
and may take a while to load, especially for the larger
chromosomes. Please be patient.
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