3217 229 96 2 chrY 95 948 -51512636 + L1PA12 LINE L1 656 1588 -5993 2623 192 25 17 chrY 948 1582 -51512002 + L1PA12 LINE L1 2405 3043 -4531 1206 81 46 12 chrY 1802 2007 -51511577 + AluY SINE Alu 111 311 0 263 235 67 0 chrY 2039 2158 -51511426 - L1M4 LINE L1 -1720 4426 4300 1694 199 14 0 chrY 2241 2538 -51511046 + AluJb SINE Alu 1 301 -11 2002 149 0 7 chrY 2581 2882 -51510702 + AluSq SINE Alu 1 299 -14 250 319 90 90 chrY 3552 3831 -51509753 + L2 LINE L2 3029 3307 -6 186 264 75 0 chrY 3901 3954 -51509630 + MIR SINE MIR 85 141 -121 325 269 19 10 chrY 4342 4446 -51509138 + MLT1D LTR MaLR 4 108 -397 2152 102 0 33 chrY 4965 5101 -51508483 + AluSx SINE Alu 1 140 -172 2141 121 24 0 chrY 5101 5391 -51508193 + AluSx SINE Alu 1 297 -15 2152 102 0 33 chrY 5391 5559 -51508025 + AluSx SINE Alu 140 295 -17 1690 189 3 10 chrY 5592 5883 -51507701 + AluJo SINE Alu 1 289 -23 22 0 0 0 chrY 5888 5910 -51507674 + AT_rich Low_complexity Low_complexity 1 22 0 2085 118 3 0 chrY 6085 6391 -51507193 - AluSx SINE Alu 0 312 1 2498 72 0 10 chrY 7331 7637 -51505947 + AluY SINE Alu 1 303 -8 2317 97 3 0 chrY 7957 8255 -51505329 - AluSq SINE Alu -14 299 1 2255 109 30 0 chrY 8672 8974 -51504610 - AluSx SINE Alu -1 311 1 2118 110 20 17 chrY 9313 9614 -51503970 - AluSx SINE Alu -10 302 1 973 124 11 10 chrY 9803 10093 -51503491 - THE1C LTR MaLR 0 375 1 1914 161 0 3 chrY 10350 10649 -51502935 + AluJo SINE Alu 3 300 -12 2339 102 0 0 chrY 10653 10948 -51502636 - AluY SINE Alu -16 295 1 21 0 0 0 chrY 10951 10972 -51502612 + AT_rich Low_complexity Low_complexity 1 21 0 1575 115 0 9 chrY 11219 11436 -51502148 + AluSg/x SINE Alu 95 309 0 2405 79 7 3 chrY 11784 12089 -51501495 + AluSx SINE Alu 1 306 -6 354 80 0 0 chrY 12366 12416 -51501168 - MADE1 DNA Mariner -1 79 30 301 121 0 121 chrY 12412 12478 -51501106 + AluJo SINE Alu 94 151 -151 * 294 77 19 58 chrY 12479 12531 -51501053 - AluJo SINE Alu -160 142 93 * 383 41 0 0 chrY 12526 12575 -51501009 + MADE1 DNA Mariner 30 78 -2 376 229 32 13 chrY 12917 13285 -51500299 + CT-rich Low_complexity Low_complexity 1 375 0 599 214 12 15 chrY 13306 13645 -51499939 + CT-rich Low_complexity Low_complexity 1 338 0 530 289 168 43 chrY 14595 14773 -51498811 - HAL1 LINE L1 -1179 1328 1174 2397 116 0 0 chrY 14773 15083 -51498501 - AluSx SINE Alu -2 310 1 530 289 168 43 chrY 15083 15326 -51498258 - HAL1 LINE L1 -1333 1174 881 2624 71 0 0 chrY 16397 16708 -51496876 + AluY SINE Alu 1 311 0 2349 91 0 0 chrY 17052 17377 -51496207 + AluY SINE Alu 1 325 0 2337 97 7 3 chrY 17644 17952 -51495632 - AluSc SINE Alu 0 309 1 2375 103 6 3 chrY 17962 18273 -51495311 - AluSx SINE Alu 0 312 1 1728 95 9 0 chrY 18992 19214 -51494370 + AluSg/x SINE Alu 70 293 -17 1725 141 6 72 chrY 19327 19646 -51493938 - AluJo SINE Alu -14 298 1 2009 138 0 13 chrY 19925 20230 -51493354 - AluSx SINE Alu -10 302 2 2316 89 0 52 chrY 20272 20597 -51492987 + AluSp SINE Alu 2 309 -4 184 271 21 0 chrY 22316 22364 -51491220 + L2 LINE L2 3261 3309 -4 2436 90 0 0 chrY 22497 22798 -51490786 - AluSx SINE Alu -11 301 1 240 122 0 0 chrY 23119 23160 -51490424 + (T)n Simple_repeat Simple_repeat 1 41 0 1168 95 0 0 chrY 24641 24789 -51488795 - AluSc SINE Alu -161 148 1 2461 68 0 19 chrY 25183 25492 -51488092 + AluSc SINE Alu 1 303 -6 295 294 50 0 chrY 25560 25679 -51487905 - L1M4 LINE L1 -2171 3975 3851 423 0 0 0 chrY 25910 25957 -51487627 + (TG)n Simple_repeat Simple_repeat 2 48 0 2192 123 3 0 chrY 26002 26295 -51487289 - AluSx SINE Alu -18 294 1 3378 80 0 13 chrY 26928 27378 -51486206 - MLT2A1 LTR ERVL 0 444 1 2261 124 0 6 chrY 27585 27899 -51485685 - AluSx SINE Alu 0 312 1 694 251 52 22 chrY 28294 28363 -51485221 + MER58 DNA MER1_type 6 71 -2349 2095 134 3 6 chrY 28363 28676 -51484908 - AluSx SINE Alu 0 312 1 694 251 52 22 chrY 28676 28890 -51484694 + MER58 DNA MER1_type 71 2420 0 597 189 13 75 chrY 29035 29077 -51484507 - L1MB5 LINE L1 0 6174 6131 1793 115 58 0 chrY 29077 29337 -51484247 - AluSx SINE Alu -16 296 22 597 189 13 75 chrY 29337 29453 -51484131 - L1MB5 LINE L1 -43 6131 6026 504 246 0 30 chrY 29467 29601 -51483983 - MLT1C LTR MaLR 0 467 338 893 138 6 17 chrY 29606 29787 -51483797 + (TTCC)n Simple_repeat Simple_repeat 1 179 0 268 189 27 0 chrY 29792 29866 -51483718 + CT-rich Low_complexity Low_complexity 2 77 0 2084 110 0 21 chrY 29866 30148 -51483436 - AluSx SINE Alu -36 276 1 1003 176 131 0 chrY 30149 30370 -51483214 - MLT1C LTR MaLR -113 354 105 440 80 0 148 chrY 30372 30425 -51483159 - MADE1 DNA Mariner 0 80 43 2307 112 0 0 chrY 30425 30721 -51482863 + AluSg SINE Alu 1 296 -14 440 80 0 148 chrY 30721 30755 -51482829 - MADE1 DNA Mariner -37 43 6 524 191 0 9 chrY 30760 30865 -51482719 - MLT1C LTR MaLR -363 104 1 852 230 0 0 chrY 30868 31064 -51482520 - L1MB5 LINE L1 -169 6005 5810 534 165 0 0 chrY 31177 31280 -51482304 + (CA)n Simple_repeat Simple_repeat 1 103 0 2263 117 0 0 chrY 31338 31629 -51481955 + AluSx SINE Alu 3 293 -19 1477 158 3 89 chrY 33963 34089 -51479495 + MER47A DNA MER2_type 1 136 -2187 2034 125 24 14 chrY 34089 34386 -51479198 - AluSq SINE Alu -13 300 1 1477 158 3 89 chrY 34386 34595 -51478989 + MER47A DNA MER2_type 136 307 -59 1519 225 0 10 chrY 34595 34906 -51478678 - AluJo SINE Alu 0 312 5 270 280 17 68 chrY 34937 35029 -51478555 - MIR SINE MIR -40 222 136 3469 71 21 5 chrY 35029 35466 -51478118 - MLT2A1 LTR ERVL 0 444 1 270 280 17 68 chrY 35466 35491 -51478093 - MIR SINE MIR -126 136 111 3654 124 26 0 chrY 35619 36159 -51477425 - MER41A LTR ERV1 0 554 1 1036 109 14 0 chrY 36419 36566 -51477018 + L1PA10 LINE L1 6020 6168 0 1030 187 41 8 chrY 36862 37108 -51476476 + L1MA4 LINE L1 6046 6299 -1 4073 178 80 9 chrY 37194 37965 -51475619 - LTR1B LTR ERV1 0 826 1 2348 125 0 0 chrY 38200 38512 -51475072 + AluSx SINE Alu 1 312 0 346 194 62 131 chrY 38756 38916 -51474668 - MER5A DNA MER1_type 0 189 41 859 228 47 9 chrY 39102 39313 -51474271 + MER20 DNA MER1_type 1 219 0 318 194 37 37 chrY 39330 39438 -51474146 + (TCTA)n Simple_repeat Simple_repeat 4 111 0 641 141 19 6 chrY 39449 39605 -51473979 + (TCTA)n Simple_repeat Simple_repeat 4 161 0 728 254 46 0 chrY 39621 39818 -51473766 + MER20 DNA MER1_type 14 219 0 1014 97 0 156 chrY 40516 40702 -51472882 + AluSg/x SINE Alu 138 294 -18 1880 195 4 30 chrY 40855 40964 -51472620 + MLT1B LTR MaLR 1 111 -285 2298 70 33 33 chrY 40964 41266 -51472318 + AluY SINE Alu 1 302 -9 1880 195 4 30 chrY 41266 41560 -51472024 + MLT1B LTR MaLR 111 396 0 2178 167 8 13 chrY 41589 41978 -51471606 + MLT1B LTR MaLR 4 390 0 1093 175 5 24 chrY 41979 42216 -51471368 + MLT1B LTR MaLR 159 467 0 1235 178 9 0 chrY 42216 42446 -51471138 + MLT1B LTR MaLR 158 389 -1 334 278 21 10 chrY 42455 42552 -51471032 + MER5A DNA MER1_type 6 103 -86 3172 166 46 88 chrY 43306 43535 -51470049 + LTR39 LTR ERV1 1 238 -545 1960 135 10 10 chrY 43535 43823 -51469761 - AluSx SINE Alu -24 288 1 3172 166 46 88 chrY 43823 44402 -51469182 + LTR39 LTR ERV1 238 775 -8 3431 144 11 0 chrY 44407 44950 -51468634 + MER41A LTR ERV1 6 554 0 2099 143 0 0 chrY 45268 45576 -51468008 + AluSx SINE Alu 1 308 -4 1862 160 0 17 chrY 45576 45876 -51467708 + AluSg SINE Alu 1 295 -15 324 70 0 0 chrY 45876 45919 -51467665 + (GGAA)n Simple_repeat Simple_repeat 2 44 0 2977 144 20 64 chrY 46372 46653 -51466931 - MER39B LTR ERV1 -27 626 334 2462 73 0 0 chrY 46653 46941 -51466643 - AluSc SINE Alu -21 288 1 2977 144 20 64 chrY 46941 47060 -51466524 - MER39B LTR ERV1 -319 334 211 2619 52 0 3 chrY 47060 47367 -51466217 - AluY SINE Alu -5 306 1 2977 144 20 64 chrY 47367 47619 -51465965 - MER39B LTR ERV1 -442 211 2 2266 131 0 0 chrY 48987 49299 -51464285 + AluSx SINE Alu 1 312 0 228 378 56 14 chrY 49897 50040 -51463544 + MIR SINE MIR 103 251 -11 418 247 159 12 chrY 50316 50486 -51463098 - MLT1J2 LTR MaLR 0 450 256 1289 191 22 4 chrY 50632 50904 -51462680 + L1MB5 LINE L1 5809 6085 -89 1691 187 3 31 chrY 51333 51654 -51461930 - AluJo SINE Alu 0 312 1 2751 200 33 6 chrY 52688 53233 -51460351 + L1MB5 LINE L1 5615 6174 0 23 54 0 0 chrY 53510 53547 -51460037 + AT_rich Low_complexity Low_complexity 1 37 0 252 188 25 12 chrY 53555 53635 -51459949 + GA-rich Low_complexity Low_complexity 4 84 0 478 218 17 11 chrY 53659 53838 -51459746 + GA-rich Low_complexity Low_complexity 1 180 0 1167 112 0 0 chrY 53874 53982 -51459602 + (GGAA)n Simple_repeat Simple_repeat 1 287 0 1167 112 0 0 chrY 53982 54161 -51459423 + (GGAA)n Simple_repeat Simple_repeat 1 179 0 198 71 0 0 chrY 54681 54709 -51458875 + (TGAA)n Simple_repeat Simple_repeat 1 28 0 3983 193 19 4 chrY 55262 56013 -51457571 + L1MB5 LINE L1 5407 6168 -6 2412 106 0 0 chrY 56046 56358 -51457226 + AluSx SINE Alu 1 312 0 878 50 0 0 chrY 56375 56476 -51457108 + AluYa5 SINE Alu 1 101 -210 4287 74 9 7 chrY 56477 57034 -51456550 - LTR6B LTR ERV1 0 558 1 1560 63 5 15 chrY 57034 57240 -51456344 + AluYa5 SINE Alu 99 302 -9 1127 164 0 11 chrY 57802 57991 -51455593 + AluJb SINE Alu 123 309 -3 1148 39 0 0 chrY 58148 58277 -51455307 + AluY SINE Alu 1 129 -182 1976 142 13 10 chrY 58630 58941 -51454643 + AluJo SINE Alu 1 312 0 1979 122 42 7 chrY 59145 59433 -51454151 - AluSx SINE Alu -14 298 1 285 254 67 22 chrY 59440 59574 -51454010 + L1ME2 LINE L1 4976 5115 -1031 869 156 28 0 chrY 59575 59716 -51453868 + AluSg/x SINE Alu 153 297 -15 189 0 0 0 chrY 59756 59777 -51453807 + (TAA)n Simple_repeat Simple_repeat 2 22 0 1061 186 4 75 chrY 59877 60014 -51453570 + MER2 DNA MER2_type 1 117 -228 2218 120 0 0 chrY 60014 60314 -51453270 - AluSx SINE Alu -12 300 1 1061 186 4 75 chrY 60314 60402 -51453182 + MER2 DNA MER2_type 117 210 -135 225 338 0 12 chrY 60434 60514 -51453070 + MER2 DNA MER2_type 267 345 0 227 30 0 30 chrY 60550 60583 -51453001 + (GAAAA)n Simple_repeat Simple_repeat 4 35 0 24 32 0 0 chrY 60777 60808 -51452776 + AT_rich Low_complexity Low_complexity 1 31 0 2034 112 35 0 chrY 60816 61102 -51452482 + AluSg SINE Alu 1 296 -14 443 189 7 45 chrY 61142 61290 -51452294 - MER4A LTR ERV1 -203 461 261 646 111 0 10 chrY 61290 61389 -51452195 - MER4A LTR ERV1 -566 98 1 4708 101 23 14 chrY 61427 61846 -51451738 + PABL_A LTR ERV1 1 430 -230 2499 56 0 3 chrY 61846 62152 -51451432 + AluY SINE Alu 1 305 -6 4708 101 23 14 chrY 62152 62384 -51451200 + PABL_A LTR ERV1 430 658 -2 575 260 50 10 chrY 62408 62608 -51450976 - MER67C LTR ERV1 -469 241 34 962 260 71 0 chrY 62971 63279 -51450305 + L1ME2 LINE L1 5465 5794 -370 379 259 121 50 chrY 63287 63349 -51450235 + L1ME2 LINE L1 5872 5928 -236 2351 78 3 0 chrY 63349 63645 -51449939 + AluY SINE Alu 1 297 -14 379 259 121 50 chrY 63645 63821 -51449763 + L1ME2 LINE L1 5928 6127 -37 22 0 0 0 chrY 63872 63894 -51449690 + AT_rich Low_complexity Low_complexity 1 22 0 2438 87 3 0 chrY 64201 64511 -51449073 - AluY SINE Alu 0 311 1 318 272 60 106 chrY 64516 64751 -51448833 - MIR SINE MIR -19 243 20 378 299 7 28 chrY 64945 65089 -51448495 + L1ME3 LINE L1 5627 5767 -403 459 245 20 0 chrY 65118 65220 -51448364 + U6 snRNA snRNA 4 107 0 975 206 46 27 chrY 65220 65482 -51448102 + L1MA8 LINE L1 5960 6226 -65 300 228 89 41 chrY 65523 65577 -51448007 + L1ME3 LINE L1 5868 5918 -244 2350 139 94 54 chrY 65577 66043 -51447541 - MER31A LTR ERV1 0 485 1 300 228 89 41 chrY 66043 66111 -51447473 + L1ME3 LINE L1 5918 5996 -166 366 234 156 44 chrY 66683 66888 -51446696 - LTR37A LTR ERV1 -2 424 197 1226 210 11 11 chrY 69462 69729 -51443855 + L1MB5 LINE L1 5831 6097 -77 210 253 0 80 chrY 70994 71069 -51442515 + L2 LINE L2 3203 3271 -1 310 239 87 0 chrY 72179 72271 -51441313 + L1M4 LINE L1 5102 5201 -945 483 258 39 7 chrY 74439 74594 -51438990 - MER39 LTR ERV1 -11 696 537 542 126 0 0 chrY 74599 74686 -51438898 - AluSp/q SINE Alu -5 308 222 550 287 71 35 chrY 74689 74943 -51438641 - LTR47B LTR ERVL -130 313 51 259 210 0 32 chrY 74989 75051 -51438533 - LTR49-int LTR ERV1 -2354 4244 4185 1422 332 89 37 chrY 75265 75996 -51437588 - LTR49-int LTR ERV1 -439 6683 5885 1981 140 0 10 chrY 75996 76322 -51437262 - AluSc SINE Alu 0 309 1 1422 332 89 37 chrY 76322 76589 -51436995 - LTR49-int LTR ERV1 -1237 5885 5633 1883 137 20 13 chrY 77187 77486 -51436098 + AluSx SINE Alu 1 301 -11 1451 193 64 10 chrY 77578 77874 -51435710 - AluJb SINE Alu 0 312 1 2492 168 46 26 chrY 77874 77940 -51435644 + Tigger3(Golem) DNA MER2_type 2511 2574 -455 2114 134 0 0 chrY 77940 78238 -51435346 + AluSx SINE Alu 1 298 -14 2492 168 46 26 chrY 78238 78670 -51434914 + Tigger3(Golem) DNA MER2_type 2574 3019 -10 306 50 0 0 chrY 78761 78801 -51434783 + (CA)n Simple_repeat Simple_repeat 2 41 0 2039 125 18 0 chrY 78827 79129 -51434455 + AluSg SINE Alu 1 307 0 1341 193 97 65 chrY 79218 79532 -51434052 - MER65C LTR ERV1 -15 446 113 1997 128 14 0 chrY 79532 79814 -51433770 - AluSx SINE Alu -26 286 1 1341 193 97 65 chrY 79814 79930 -51433654 - MER65C LTR ERV1 -348 113 2 325 328 67 45 chrY 80067 80184 -51433400 - LTR49-int LTR ERV1 -172 4699 4586 1908 140 13 17 chrY 80184 80484 -51433100 - AluSq SINE Alu -11 302 4 325 328 67 45 chrY 80484 80680 -51432904 - LTR49-int LTR ERV1 -285 4586 4379 922 252 117 11 chrY 80776 81058 -51432526 - LTR49-int LTR ERV1 -698 4173 3862 2052 125 3 0 chrY 81135 81423 -51432161 + AluSp SINE Alu 1 289 -24 351 113 0 0 chrY 81423 81476 -51432108 + (TA)n Simple_repeat Simple_repeat 2 54 0 328 224 122 10 chrY 81600 81698 -51431886 - LTR49-int LTR ERV1 -1409 3462 3354 942 246 45 10 chrY 81805 82094 -51431490 - LTR49-int LTR ERV1 -1570 3301 3003 18923 135 10 13 chrY 82115 85909 -51427675 - L1PA10 LINE L1 -6 6162 2377 36469 94 15 19 chrY 85933 92106 -51421478 - L1PA6 LINE L1 -2 6152 11 4212 159 37 8 chrY 92097 92878 -51420706 - L1PA10 LINE L1 -3739 2407 1604 * 453 237 61 132 chrY 92878 93017 -51420567 - LTR49-int LTR ERV1 -1850 4481 4334 2230 113 3 0 chrY 93017 93309 -51420275 - AluY SINE Alu -18 293 1 453 237 61 132 chrY 93309 93365 -51420219 - LTR49-int LTR ERV1 -1997 4334 4276 1728 180 0 7 chrY 93365 93660 -51419924 + AluSx SINE Alu 1 293 -19 453 237 61 132 chrY 93660 93680 -51419904 - LTR49-int LTR ERV1 -2055 4276 4256 1985 204 23 43 chrY 93680 94120 -51419464 - MSTB1 LTR MaLR 0 432 2 453 237 61 132 chrY 94120 94378 -51419206 - LTR49-int LTR ERV1 -2075 4256 4040 867 199 6 0 chrY 94449 94605 -51418979 + AluSg/x SINE Alu 113 269 -41 249 119 0 0 chrY 94619 94661 -51418923 + (TAAA)n Simple_repeat Simple_repeat 2 43 0 7776 191 29 45 chrY 94672 95477 -51418107 - L1PA15 LINE L1 0 6165 5349 2135 111 0 38 chrY 95477 95793 -51417791 - AluSp SINE Alu -5 308 5 7776 191 29 45 chrY 95793 96191 -51417393 - L1PA15 LINE L1 -816 5349 4946 2140 128 0 0 chrY 96191 96488 -51417096 - AluY SINE Alu -14 297 1 7776 191 29 45 chrY 96488 97950 -51415634 - L1PA15 LINE L1 -1219 4946 3511 2282 107 3 0 chrY 97965 98273 -51415311 - AluY SINE Alu -2 309 1 1901 132 3 35 chrY 98641 98951 -51414633 + AluSc SINE Alu 1 300 -9 1518 209 3 11 chrY 99166 99449 -51414135 + AluSx SINE Alu 9 289 -23 501 152 114 32 chrY 99450 99608 -51413976 - LTR49-int LTR ERV1 -1149 3787 3617 1305 164 34 57 chrY 99797 100095 -51413489 - MER65C LTR ERV1 -31 430 140 2219 99 10 0 chrY 100103 100426 -51413158 + AluSp SINE Alu 1 313 0 272 182 0 0 chrY 100445 100489 -51413095 - MER65C LTR ERV1 -417 44 1 838 141 14 7 chrY 100511 100653 -51412931 - L1MA3 LINE L1 0 6305 6163 3901 182 33 53 chrY 100657 100905 -51412679 - L1MA5 LINE L1 -292 6008 5757 228 89 0 0 chrY 100905 100950 -51412634 + LTR66 LTR ERVL 398 442 -168 2165 90 53 17 chrY 100950 101249 -51412335 - AluSg SINE Alu 0 310 1 3901 182 33 53 chrY 101249 101854 -51411730 - L1MA5 LINE L1 -542 5758 5143 2209 126 3 0 chrY 101854 102163 -51411421 - AluSp SINE Alu -3 310 1 3901 182 33 53 chrY 102163 102950 -51410634 - L1MA5 LINE L1 -1157 5143 4411 2147 134 3 0 chrY 102950 103255 -51410329 - AluSx SINE Alu -6 306 1 861 200 31 17 chrY 103284 103484 -51410100 + L1MA8 LINE L1 5961 6178 -125 308 250 0 0 chrY 103451 103523 -51410061 + L1M4 LINE L1 3750 3821 -2325 * 781 264 29 13 chrY 103523 103762 -51409822 + MLT1D LTR MaLR 263 505 0 1903 137 47 3 chrY 103959 104280 -51409304 - AluSx SINE Alu 0 334 1 1724 232 104 35 chrY 104892 105410 -51408174 + LTR64 LTR ERVK 3 556 -2 1991 95 11 0 chrY 105539 105825 -51407759 + AluSp SINE Alu 22 310 0 313 238 122 49 chrY 106031 106195 -51407389 + L1ME LINE L1 5641 5816 -305 240 111 0 0 chrY 106751 106787 -51406797 + (CA)n Simple_repeat Simple_repeat 1 36 0 456 143 0 0 chrY 106921 106984 -51406600 - AluS SINE Alu -21 291 229 228 170 19 38 chrY 107040 107093 -51406491 - LTR68 LTR ERV1 -303 437 386 306 87 0 0 chrY 107565 107611 -51405973 + (CA)n Simple_repeat Simple_repeat 2 47 0 236 159 0 0 chrY 107623 107667 -51405917 + HAL1 LINE L1 2111 2154 -353 1918 151 14 0 chrY 107756 108040 -51405544 - AluSx SINE Alu -24 288 1 835 248 0 6 chrY 108095 108295 -51405289 - AluJo SINE Alu 0 320 122 6719 139 73 5 chrY 108631 108707 -51404877 - MER41-int LTR ERV1 -447 7090 7021 2099 128 3 13 chrY 108707 109020 -51404564 - AluSg SINE Alu 0 310 1 6719 139 73 5 chrY 109020 110029 -51403555 - MER41-int LTR ERV1 -516 7021 5931 10691 128 20 19 chrY 110029 112074 -51401510 + L1P3 LINE L1 687 2738 -3723 2445 216 28 55 chrY 112053 112776 -51400808 + L1M4 LINE L1 4392 5094 -1367 * 3366 135 43 53 chrY 112854 113478 -51400106 - MER41-int LTR ERV1 -1671 5866 5249 1736 111 23 24 chrY 113477 113517 -51400067 - MER41-int LTR ERV1 -2572 2645 2606 * 2078 137 0 3 chrY 113517 113823 -51399761 + AluSx SINE Alu 1 305 -7 1736 111 23 24 chrY 113823 114170 -51399414 - MER41-int LTR ERV1 -2611 2606 2214 * 2432 142 134 14 chrY 114152 114659 -51398925 - MER41-int LTR ERV1 -2578 3368 2801 520 78 184 58 chrY 114635 114738 -51398846 - MER41-int LTR ERV1 -4781 1165 1050 * 6258 127 48 50 chrY 114726 115245 -51398339 - MER41-int LTR ERV1 -4769 3047 2528 2596 148 42 29 chrY 115245 115723 -51397861 - LTR19A LTR ERV1 -2 484 1 6258 127 48 50 chrY 115723 116460 -51397124 - MER41-int LTR ERV1 -5288 2528 1794 1509 170 8 0 chrY 116480 116727 -51396857 - AluY SINE Alu -25 286 38 676 186 9 89 chrY 116731 116953 -51396631 - MER4A LTR ERV1 -140 524 261 475 155 31 21 chrY 116953 117050 -51396534 - MER4A LTR ERV1 -566 98 1 4559 160 36 32 chrY 117050 117942 -51395642 - MER41-int LTR ERV1 -6213 1603 709 2627 111 22 24 chrY 117942 118492 -51395092 - PABL_A LTR ERV1 -69 591 1 193 220 20 20 chrY 118543 118593 -51394991 + MIR SINE MIR 199 248 -14 673 118 80 96 chrY 118741 118869 -51394715 + MER4A LTR ERV1 1 127 -537 2153 89 3 48 chrY 118869 119183 -51394401 + AluY SINE Alu 1 300 -11 673 118 80 96 chrY 119183 119241 -51394343 + MER4A LTR ERV1 127 184 -480 1738 112 0 0 chrY 119241 119482 -51394102 - AluY SINE Alu -22 289 49 3109 182 47 7 chrY 119482 120059 -51393525 - MER41-int LTR ERV1 -7111 705 106 1068 183 0 0 chrY 120082 120268 -51393316 + MER4A LTR ERV1 171 356 -308 1561 114 0 0 chrY 120332 120533 -51393051 - AluSp SINE Alu -112 201 1 544 169 141 87 chrY 120553 120737 -51392847 + MER4A LTR ERV1 355 548 -116 414 0 0 0 chrY 120737 120783 -51392801 + (GA)n Simple_repeat Simple_repeat 1 46 0 765 180 0 14 chrY 120783 120922 -51392662 + L1MA10 LINE L1 6161 6297 -37 198 71 0 0 chrY 120939 120967 -51392617 + (TTTAA)n Simple_repeat Simple_repeat 3 30 0 2497 34 0 20 chrY 120967 121254 -51392330 - AluY SINE Alu -28 283 1 272 292 21 10 chrY 121344 121440 -51392144 - L1MB7 LINE L1 -26 6158 6062 1845 173 92 19 chrY 124720 125131 -51388453 - MER67A LTR ERV1 -102 441 1 234 287 37 56 chrY 126379 126487 -51387097 + MIR SINE MIR 46 151 -111 1386 153 65 102 chrY 129142 129494 -51384090 - L1PB3 LINE L1 -9 6145 5807 2879 10 0 0 chrY 131199 131509 -51382075 - AluYa5 SINE Alu -1 310 1 2279 95 7 0 chrY 134202 134496 -51379088 - AluSp SINE Alu -16 297 2 308 270 43 43 chrY 136338 136501 -51377083 + L1MC5 LINE L1 7745 7907 -54 2222 104 3 7 chrY 136505 136803 -51376781 - AluY SINE Alu -14 297 1 779 145 16 0 chrY 136964 137088 -51376496 - AluSx SINE Alu -11 299 174 892 101 8 0 chrY 137089 137208 -51376376 - AluSx SINE Alu -192 120 1 225 246 57 57 chrY 137295 137417 -51376167 - L1MC4a LINE L1 -1347 6461 6340 3370 219 75 39 chrY 137437 137783 -51375801 - L1MB2 LINE L1 -2 6405 6073 1935 150 7 3 chrY 137783 138083 -51375501 - AluSq SINE Alu -12 301 1 3370 219 75 39 chrY 138083 139138 -51374446 - L1MB2 LINE L1 -334 6073 4955 497 215 93 19 chrY 139172 139377 -51374207 - L1MB2 LINE L1 -2912 3470 3251 679 253 5 61 chrY 139378 139668 -51373916 - L1MB2 LINE L1 -3750 2632 2361 455 209 57 81 chrY 139707 139918 -51373666 - L1MB2 LINE L1 -4048 2336 2131 453 250 167 15 chrY 140055 140132 -51373452 - L1MB2 LINE L1 -4512 1872 1808 195 42 0 0 chrY 140132 140156 -51373428 + (TTTC)n Simple_repeat Simple_repeat 1 24 0 453 250 167 15 chrY 140156 140282 -51373302 - L1MB2 LINE L1 -4576 1808 1638 3550 158 74 36 chrY 140296 140998 -51372586 + MER4E LTR ERV1 1 729 -50 1344 208 135 75 chrY 141001 141726 -51371858 - L1MB2 LINE L1 -4761 1623 855 376 209 0 57 chrY 141730 141835 -51371749 - L1M3c LINE L1 -5124 1017 919 2132 125 7 0 chrY 141974 142279 -51371305 - AluSp SINE Alu -5 308 2 866 138 0 29 chrY 142279 142417 -51371167 - AluSq/x SINE Alu -177 135 2 1027 169 6 6 chrY 142418 142584 -51371000 - AluSg/x SINE Alu -11 299 134 370 294 57 64 chrY 142604 142869 -51370715 - L1MEd LINE L1 -4937 1182 920 2287 93 6 10 chrY 146236 146548 -51367036 - AluY SINE Alu 0 311 1 738 267 4 43 chrY 147540 147772 -51365812 - MLT1E2 LTR MaLR -160 466 244 3473 190 32 10 chrY 147877 148556 -51365028 - MER52A LTR ERV1 -2 1753 1060 342 229 79 14 chrY 148524 148664 -51364920 - MER52C LTR ERV1 -680 598 450 * 1279 213 48 21 chrY 148886 149177 -51364407 - AluSx SINE Alu -13 299 1 1857 143 0 4 chrY 150596 150868 -51362716 + AluSg SINE Alu 19 289 -21 507 237 237 6 chrY 150869 151042 -51362542 - MLT1C LTR MaLR -57 410 198 2252 120 3 0 chrY 151076 151384 -51362200 - AluY SINE Alu 0 311 3 663 227 65 38 chrY 151461 151646 -51361938 - Charlie1a DNA MER1_type -1225 230 41 283 281 110 20 chrY 151899 152045 -51361539 + L1ME3 LINE L1 5801 5959 -203 809 238 0 0 chrY 152365 152525 -51361059 - AluJo SINE Alu -15 297 138 3749 121 2 4 chrY 152526 153038 -51360546 - MER9 LTR ERVK 0 511 1 770 165 23 30 chrY 153049 153182 -51360402 - AluJo SINE Alu -169 133 2 923 248 97 71 chrY 153183 153427 -51360157 - L1MDa LINE L1 -2726 3814 3578 1958 148 3 16 chrY 153427 153732 -51359852 - AluSx SINE Alu -11 301 1 923 248 97 71 chrY 153732 154727 -51358857 - L1MDa LINE L1 -2962 3578 2524 583 234 37 21 chrY 154736 154924 -51358660 - PABL_B LTR ERV1 -2 665 475 535 203 149 47 chrY 155432 155753 -51357831 - L1MDa LINE L1 -4037 2503 2150 1408 286 75 21 chrY 155770 156740 -51356844 - L1MDa LINE L1 -5242 1298 35 7944 63 19 0 chrY 156835 157823 -51355761 + LTR13 LTR ERVK 1 1007 0 1856 136 3 89 chrY 157878 158216 -51355368 + AluSx SINE Alu 1 309 -3 2362 85 0 0 chrY 158216 158511 -51355073 + AluY SINE Alu 1 295 -16 2011 154 13 0 chrY 158964 159270 -51354314 + AluSx SINE Alu 1 310 -2 492 100 0 0 chrY 160094 160174 -51353410 + (TA)n Simple_repeat Simple_repeat 2 81 0 1665 183 37 0 chrY 160578 160878 -51352706 + AluSx SINE Alu 1 311 -1 1137 224 79 34 chrY 161366 161745 -51351839 + MSTD LTR MaLR 1 396 0 2319 64 17 10 chrY 162886 163184 -51350400 + AluY SINE Alu 1 300 -11 1300 136 15 5 chrY 164566 164764 -51348820 + AluSc SINE Alu 103 302 -7 2138 136 0 0 chrY 164775 165069 -51348515 + AluSg SINE Alu 5 298 -12 628 247 59 0 chrY 165069 165264 -51348320 + L1MB5 LINE L1 5964 6161 -5 2237 102 0 13 chrY 165269 165573 -51348011 + AluY SINE Alu 1 300 -11 12558 119 22 10 chrY 165573 167588 -51345996 - HERVK3 LTR ERVK -5167 2076 38 911 173 6 6 chrY 167594 167767 -51345817 - LTR3 LTR ERVK -3 429 257 1400 172 8 0 chrY 167803 168041 -51345543 - LTR3 LTR ERVK -171 261 22 4228 218 74 6 chrY 168053 168998 -51344586 - MER83-int LTR ERV1 -3268 1017 9 2105 161 25 39 chrY 169008 169444 -51344140 - MER83 LTR ERV1 -13 435 6 452 208 14 14 chrY 169638 169782 -51343802 + CT-rich Low_complexity Low_complexity 2 145 0 1164 247 36 23 chrY 169782 170090 -51343494 - AluJo SINE Alu 0 312 1 22 0 0 0 chrY 170191 170213 -51343371 + AT_rich Low_complexity Low_complexity 1 22 0 2053 122 3 0 chrY 170337 170623 -51342961 + AluSg1 SINE Alu 1 287 -22 1770 185 3 0 chrY 170632 170919 -51342665 + AluJb SINE Alu 1 288 -24 1643 169 26 0 chrY 170929 171196 -51342388 + AluJb SINE Alu 37 310 -2 314 208 24 24 chrY 171199 171324 -51342260 + GA-rich Low_complexity Low_complexity 3 127 0 769 148 9 0 chrY 171444 171559 -51342025 + FLAM_C SINE Alu 1 116 -17 1976 136 0 14 chrY 171674 171988 -51341596 + AluSg SINE Alu 1 310 0 2365 63 0 7 chrY 172053 172354 -51341230 + AluY SINE Alu 1 299 -12 1011 207 14 5 chrY 172355 172577 -51341007 - L1MB2 LINE L1 -344 5827 5604 1579 256 66 26 chrY 172598 173461 -51340123 - L1M4 LINE L1 -3172 3210 2307 762 246 62 9 chrY 173461 173685 -51339899 - MER46A DNA MER2_type 0 236 1 1579 256 66 26 chrY 173685 173849 -51339735 - L1M4 LINE L1 -4075 2307 2151 209 191 22 45 chrY 173851 173940 -51339644 + T-rich Low_complexity Low_complexity 2 88 0 457 310 21 7 chrY 173967 174109 -51339475 - FRAM SINE Alu -32 144 1 2129 227 62 82 chrY 174228 174259 -51339325 - L1M4 LINE L1 -4488 1896 1866 2101 85 44 10 chrY 174259 174552 -51339032 + AluY SINE Alu 1 303 -8 2129 227 62 82 chrY 174552 175031 -51338553 - L1M4 LINE L1 -4518 1866 1379 623 217 16 0 chrY 175031 175160 -51338424 - FLAM_A SINE Alu -1 132 2 2129 227 62 82 chrY 175160 175807 -51337777 - L1M4 LINE L1 -5005 1379 859 2275 67 16 22 chrY 175807 176119 -51337465 + AluY SINE Alu 1 310 -1 2129 227 62 82 chrY 176119 176201 -51337383 - L1M4 LINE L1 -5525 859 777 21 36 0 0 chrY 177172 177200 -51336384 + AT_rich Low_complexity Low_complexity 1 28 0 180 0 0 0 chrY 178988 179008 -51334576 + (TTAA)n Simple_repeat Simple_repeat 1 20 0 2159 124 0 0 chrY 179014 179305 -51334279 - AluSx SINE Alu -21 291 1 512 268 7 7 chrY 179683 179821 -51333763 + AluSq/x SINE Alu 1 138 -175 771 208 169 0 chrY 179821 180028 -51333556 - AluSg SINE Alu -7 303 62 970 266 34 20 chrY 180041 180395 -51333189 + L1PB1 LINE L1 7 365 -6498 6501 196 49 118 chrY 180423 181275 -51332309 + L1PB1 LINE L1 2006 2915 -3952 2145 104 7 19 chrY 181275 181582 -51332002 + AluSg SINE Alu 1 303 -7 6501 196 49 118 chrY 181582 183051 -51330533 + L1PB1 LINE L1 2915 4484 -2383 238 226 52 87 chrY 183051 183166 -51330418 + LTR4 LTR ERV1 7 117 -479 6501 196 49 118 chrY 183166 183444 -51330140 + L1PB1 LINE L1 4484 4780 -2087 518 264 19 28 chrY 183444 183656 -51329928 + LTR4 LTR ERV1 385 594 -2 6501 196 49 118 chrY 183656 184558 -51329026 + L1PB1 LINE L1 4780 5743 -1124 2465 85 0 0 chrY 184558 184863 -51328721 + AluY SINE Alu 2 306 -5 6501 196 49 118 chrY 184863 185896 -51327688 + L1PB1 LINE L1 5743 6485 -382 1697 163 33 23 chrY 185896 186197 -51327387 + AluSx SINE Alu 1 304 -8 6501 196 49 118 chrY 186197 186555 -51327029 + L1PB1 LINE L1 6485 6866 -1 206 174 0 43 chrY 186943 186977 -51326607 + CT-rich Low_complexity Low_complexity 5 38 -10 2447 93 0 0 chrY 186977 187287 -51326297 - AluY SINE Alu -1 310 1 206 174 0 43 chrY 187287 187298 -51326286 + CT-rich Low_complexity Low_complexity 38 48 0 1240 197 32 29 chrY 187299 187450 -51326134 - AluJo SINE Alu -21 291 137 2132 135 3 3 chrY 187450 187746 -51325838 - AluSq SINE Alu -12 301 6 1240 197 32 29 chrY 187746 187873 -51325711 - AluJo SINE Alu -175 137 12 1632 206 0 13 chrY 188486 188787 -51324797 - AluJo SINE Alu -5 307 11 181 57 57 0 chrY 188797 188832 -51324752 + T-rich Low_complexity Low_complexity 1 37 0 284 323 16 16 chrY 189898 190022 -51323562 + MER21A LTR ERV1 550 673 -258 4786 119 53 12 chrY 190368 191117 -51322467 - LTR17 LTR ERV1 0 780 1 631 248 66 9 chrY 191145 191464 -51322120 - L1M4 LINE L1 -2912 3234 2898 695 203 86 16 chrY 191469 191656 -51321928 + LTR54 LTR ERV1 1 200 -310 455 178 0 0 chrY 191705 191795 -51321789 + L1M3f LINE L1 73 162 -5166 3469 234 82 19 chrY 191798 192958 -51320626 + L1M3f LINE L1 383 1704 -4624 252 0 0 0 chrY 192958 192986 -51320598 + (CA)n Simple_repeat Simple_repeat 2 29 0 3469 234 82 19 chrY 192986 193634 -51319950 + L1M3f LINE L1 1704 2310 -4018 408 194 28 0 chrY 193649 193721 -51319863 - AluJ/FRAM SINE Alu -23 289 216 5190 212 95 49 chrY 193745 195684 -51317900 + L1M3f LINE L1 2323 4350 -1978 2233 97 0 3 chrY 195684 195983 -51317601 + AluY SINE Alu 1 298 -13 189 45 45 45 chrY 196046 196090 -51317494 + (CAAAAA)n Simple_repeat Simple_repeat 2 45 0 698 193 0 7 chrY 196374 196524 -51317060 + LOR1a LTR ERV1 1 149 -348 3603 220 13 29 chrY 196527 197016 -51316568 - L1 LINE L1 -900 5246 4751 1039 181 206 34 chrY 197016 197308 -51316276 + MER61A LTR ERV1 2 343 0 3603 220 13 29 chrY 197308 197941 -51315643 - L1 LINE L1 -1395 4751 4142 1195 177 0 51 chrY 197947 198145 -51315439 + LOR1-int LTR ERV1 3663 3870 -4250 276 30 0 0 chrY 198145 198178 -51315406 + (TTA)n Simple_repeat Simple_repeat 1 33 0 7544 28 0 0 chrY 198179 199839 -51313745 - L1PA3 LINE L1 -18 6137 4488 1195 177 0 51 chrY 199839 199892 -51313692 + LOR1-int LTR ERV1 3869 3903 -4217 795 180 0 31 chrY 199914 200075 -51313509 + MER61A LTR ERV1 188 343 0 631 161 0 8 chrY 200076 200206 -51313378 - L1 LINE L1 -1371 4775 4647 1356 126 59 20 chrY 200206 200460 -51313124 + LOR1-int LTR ERV1 3916 4179 -3941 10443 122 9 1 chrY 200461 202152 -51311432 - L1P LINE L1 -3178 2968 1263 * 12780 79 6 3 chrY 202146 202629 -51310955 + L1PA7 LINE L1 3101 3581 -2573 1990 118 31 10 chrY 202629 202917 -51310667 - AluSc SINE Alu -15 294 1 12780 79 6 3 chrY 202917 205483 -51308101 + L1PA7 LINE L1 3581 6151 -3 454 130 26 13 chrY 205602 205679 -51307905 + THE1B LTR MaLR 287 364 0 752 217 30 18 chrY 205679 205845 -51307739 - THE1C LTR MaLR -207 168 1 476 64 73 82 chrY 205846 205929 -51307655 + LOR1-int LTR ERV1 4235 4318 -3802 1471 217 20 7 chrY 205929 206228 -51307356 - AluJb SINE Alu -9 303 1 476 64 73 82 chrY 206228 206254 -51307330 + LOR1-int LTR ERV1 4318 4343 -3777 832 149 8 0 chrY 206261 206395 -51307189 + LOR1-int LTR ERV1 5930 6064 -2056 1385 163 6 27 chrY 206489 206802 -51306782 + MER4A LTR ERV1 261 625 -39 2297 182 7 10 chrY 206804 207221 -51306363 + LOR1a LTR ERV1 82 497 0 2529 121 0 16 chrY 207229 207608 -51305976 + THE1C LTR MaLR 1 373 -2 1911 137 0 0 chrY 207881 208152 -51305432 - AluSx SINE Alu -2 310 40 373 211 44 114 chrY 208342 208569 -51305015 - L1MC5 LINE L1 -94 7867 7657 284 198 44 11 chrY 208608 208699 -51304885 + (TA)n Simple_repeat Simple_repeat 2 95 0 978 243 53 60 chrY 208727 209197 -51304387 - L1MC5 LINE L1 -370 7591 7125 1552 186 7 30 chrY 209413 209736 -51303848 - AluJb SINE Alu 0 316 1 1971 125 45 0 chrY 210717 211006 -51302578 - AluSg SINE Alu -5 305 4 1304 176 137 4 chrY 211036 211298 -51302286 - AluSp SINE Alu -10 303 7 625 226 8 0 chrY 211314 211438 -51302146 - FLAM_C SINE Alu -8 125 1 600 188 91 108 chrY 211634 211695 -51301889 + Charlie1b DNA MER1_type 7 67 -2694 2236 99 0 19 chrY 211695 212009 -51301575 + AluY SINE Alu 1 308 -3 600 188 91 108 chrY 212009 212133 -51301451 + Charlie1b DNA MER1_type 67 189 -334 276 202 134 123 chrY 212137 212429 -51301155 - L1MC4 LINE L1 -830 7131 6837 247 143 18 36 chrY 212426 212482 -51301102 + MLT1B-int LTR MaLR 1680 1734 -1 * 1396 188 122 14 chrY 212483 212835 -51300749 + MLT1B LTR MaLR 1 390 0 450 254 48 8 chrY 213777 213903 -51299681 + FRAM SINE Alu 22 152 -24 794 224 145 28 chrY 214045 214300 -51299284 - AluJo SINE Alu -17 295 11 354 261 92 7 chrY 214544 214686 -51298898 - AluJb SINE Alu -33 269 116 1601 107 110 52 chrY 217589 217880 -51295704 + AluSq SINE Alu 1 308 -5 2286 53 0 69 chrY 218356 218675 -51294909 - AluY SINE Alu -14 297 1 1898 144 10 0 chrY 218953 219244 -51294340 - AluSx SINE Alu -18 294 1 366 42 0 0 chrY 219350 219398 -51294186 + (TA)n Simple_repeat Simple_repeat 1 48 0 180 214 0 0 chrY 220080 220108 -51293476 + L2 LINE L2 3224 3251 -21 785 249 56 9 chrY 221127 221360 -51292224 + Charlie1b DNA MER1_type 12 255 -268 547 198 48 21 chrY 221393 221580 -51292004 + Charlie1b DNA MER1_type 326 517 -6 328 245 173 34 chrY 221601 221866 -51291718 - L1ME LINE L1 -319 5802 5473 1721 188 0 10 chrY 221866 222169 -51291415 - AluSx SINE Alu -12 300 1 328 245 173 34 chrY 222169 222271 -51291313 - L1ME LINE L1 -648 5473 5387 261 0 0 0 chrY 222301 222330 -51291254 + (TG)n Simple_repeat Simple_repeat 2 30 0 1166 215 0 69 chrY 222334 222622 -51290962 - AluJo SINE Alu -44 268 1 21 0 0 0 chrY 222645 222666 -51290918 + AT_rich Low_complexity Low_complexity 1 21 0 293 121 0 17 chrY 222695 222753 -51290831 - Alu SINE Alu 0 302 246 1557 160 3 78 chrY 222761 223092 -51290492 - AluJb SINE Alu -6 306 1 506 181 20 11 chrY 223093 223264 -51290320 - L1M4 LINE L1 -373 5783 5516 341 252 0 3 chrY 223422 223581 -51290003 + HsTC2 DNA Tc2 2 208 -1690 1723 145 30 46 chrY 223653 223956 -51289628 - AluSg SINE Alu -12 298 1 716 269 67 34 chrY 224142 224440 -51289144 + HsTC2 DNA Tc2 1273 1756 -142 418 278 121 64 chrY 224578 224859 -51288725 - L1M4 LINE L1 -2040 4106 3810 2140 117 10 0 chrY 225103 225412 -51288172 - AluSx SINE Alu 0 312 1 207 0 0 0 chrY 225828 225851 -51287733 + (TCCCC)n Simple_repeat Simple_repeat 4 26 0 1378 168 45 62 chrY 225851 226142 -51287442 - AluSx SINE Alu -26 286 1 22 35 0 0 chrY 226400 226429 -51287155 + AT_rich Low_complexity Low_complexity 1 29 0 842 138 0 15 chrY 226486 226616 -51286968 - FLAM_C SINE Alu -5 128 1 22 0 0 0 chrY 227058 227080 -51286504 + AT_rich Low_complexity Low_complexity 1 22 0 1892 102 6 70 chrY 227081 227396 -51286188 + AluSq SINE Alu 1 295 -18 274 309 108 0 chrY 228601 228740 -51284844 + MIR SINE MIR 83 236 -26 330 235 104 17 chrY 228920 229035 -51284549 + L1M4 LINE L1 4481 4605 -1541 1025 215 70 0 chrY 229280 229494 -51284090 - AluJo SINE Alu -77 235 7 1585 203 17 0 chrY 229503 229799 -51283785 - AluJb SINE Alu -11 301 1 1412 199 3 59 chrY 229917 230239 -51283345 + AluJb SINE Alu 2 305 -7 216 238 0 0 chrY 230241 230283 -51283301 + (CA)n Simple_repeat Simple_repeat 1 42 0 288 182 0 0 chrY 230373 230417 -51283167 - AluSp SINE Alu -130 173 130 1420 190 10 24 chrY 230421 230716 -51282868 - AluJb SINE Alu -21 291 1 2188 91 3 36 chrY 232286 232594 -51280990 - AluY SINE Alu -13 298 1 23 33 0 0 chrY 232746 232776 -51280808 + AT_rich Low_complexity Low_complexity 1 30 0 953 190 0 6 chrY 233065 233228 -51280356 + AluJo SINE Alu 121 282 -30 1381 186 41 30 chrY 233425 233720 -51279864 + AluJo SINE Alu 2 299 -3 489 216 24 24 chrY 233950 234075 -51279509 + FLAM_A SINE Alu 12 136 -6 1468 265 74 51 chrY 234620 234768 -51278816 - MLT1E2 LTR MaLR 0 626 483 1225 228 10 54 chrY 234768 235113 -51278471 + AluJo SINE Alu 1 332 0 1468 265 74 51 chrY 235113 235574 -51278010 - MLT1E2 LTR MaLR -143 483 2 760 291 101 55 chrY 235768 236205 -51277379 - MLT1E2-int LTR MaLR -223 1148 692 318 190 25 38 chrY 236297 236455 -51277129 + CT-rich Low_complexity Low_complexity 3 158 0 2679 126 25 25 chrY 236573 237010 -51276574 - MER1A DNA MER1_type 0 529 93 525 274 59 14 chrY 237070 237289 -51276295 - MLT1E2-int LTR MaLR -781 590 362 539 242 83 83 chrY 237291 237532 -51276052 - MLT1E2-int LTR MaLR -957 414 171 1721 181 17 10 chrY 237532 237830 -51275754 - AluJo SINE Alu -12 300 1 539 242 83 83 chrY 237830 237890 -51275694 - MLT1E2-int LTR MaLR -1199 172 113 387 137 27 14 chrY 238000 238073 -51275511 - MLT1E2-int LTR MaLR -1297 74 1 974 285 113 57 chrY 238081 238646 -51274938 - MLT1E2 LTR MaLR -9 617 21 266 246 0 0 chrY 239375 239432 -51274152 + AluJ/FLAM SINE Alu 36 92 -210 398 245 53 60 chrY 239675 239826 -51273758 - MIR SINE MIR -41 221 72 219 139 0 0 chrY 240216 240252 -51273332 + (T)n Simple_repeat Simple_repeat 1 36 0 265 155 17 17 chrY 240258 240316 -51273268 - HY3 scRNA scRNA -7 94 37 189 294 0 0 chrY 240487 240538 -51273046 + MIR SINE MIR 81 131 -77 243 254 0 0 chrY 241162 241233 -51272351 + T-rich Low_complexity Low_complexity 1 71 0 21 0 0 0 chrY 243250 243271 -51270313 + AT_rich Low_complexity Low_complexity 1 21 0 542 276 142 20 chrY 244867 245121 -51268463 + L1M4 LINE L1 9 293 -6249 1312 217 38 0 chrY 245130 245393 -51268191 + AluJo SINE Alu 15 287 -25 3117 246 83 39 chrY 245440 245504 -51268080 + L1M4 LINE L1 321 381 -6265 1722 153 0 51 chrY 245504 245817 -51267767 - AluSx SINE Alu -11 301 5 3117 246 83 39 chrY 245817 247130 -51266454 + L1M4 LINE L1 381 1769 -4877 222 37 0 0 chrY 247131 247158 -51266426 + (TCCC)n Simple_repeat Simple_repeat 4 30 0 459 147 0 0 chrY 247195 247270 -51266314 - AluS SINE Alu -15 296 222 1890 196 103 50 chrY 247275 247817 -51265767 + L1MB7 LINE L1 5557 6127 -57 2150 125 0 0 chrY 247933 248229 -51265355 - AluSx SINE Alu -14 298 3 641 261 111 17 chrY 248267 248621 -51264963 + HAL1b LINE L1 425 781 -567 2254 86 3 13 chrY 248676 248977 -51264607 - AluY SINE Alu -11 300 3 242 282 58 39 chrY 249109 249212 -51264372 - L2 LINE L2 -2 3311 3207 811 310 268 28 chrY 249426 250213 -51263371 - L2 LINE L2 -1323 1991 1016 242 330 86 25 chrY 251396 251593 -51261991 + L2 LINE L2 2531 2739 -575 21 0 0 0 chrY 252020 252041 -51261543 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chrY 252062 252083 -51261501 + AT_rich Low_complexity Low_complexity 1 21 0 1686 164 41 7 chrY 252153 252445 -51261139 + AluSx SINE Alu 1 302 -10 537 273 29 14 chrY 253175 253314 -51260270 + MIR SINE MIR 51 191 -71 1542 190 56 0 chrY 253430 253714 -51259870 - AluSx SINE Alu -12 300 1 325 0 0 0 chrY 254532 254568 -51259016 + (TTTA)n Simple_repeat Simple_repeat 3 52 0 1881 131 11 11 chrY 254568 254850 -51258734 - AluSx SINE Alu -30 282 1 1558 207 0 23 chrY 255033 255333 -51258251 + AluJo SINE Alu 1 293 -19 2926 73 0 3 chrY 256045 256426 -51257158 - L1PA8 LINE L1 -14 6158 5779 2298 90 0 17 chrY 256475 256775 -51256809 - AluSc SINE Alu -14 295 1 21 0 0 0 chrY 257007 257028 -51256556 + AT_rich Low_complexity Low_complexity 1 21 0 2493 79 0 16 chrY 257261 257577 -51256007 + AluY SINE Alu 1 311 0 2142 126 10 10 chrY 257865 258175 -51255409 + AluSx SINE Alu 1 310 -2 21 0 0 0 chrY 262824 262845 -51250739 + AT_rich Low_complexity Low_complexity 1 21 0 1620 184 3 32 chrY 263184 263499 -51250085 - AluJo SINE Alu -1 311 6 389 221 58 0 chrY 263716 263820 -51249764 - L1MB5 LINE L1 -11 6163 6054 30 0 0 0 chrY 264070 264100 -51249484 + AT_rich Low_complexity Low_complexity 1 30 0 413 254 27 18 chrY 264195 264305 -51249279 + MER5A DNA MER1_type 24 134 -55 671 180 225 4 chrY 264308 264552 -51249032 - L1MB2 LINE L1 -4 6167 5870 * 2855 242 70 68 chrY 264549 264638 -51248946 - L1M4c LINE L1 -2054 4372 4285 2026 136 3 0 chrY 264638 264933 -51248651 + AluSx SINE Alu 1 296 -16 1674 177 0 24 chrY 264938 265253 -51248331 + AluSx SINE Alu 3 310 0 2855 242 70 68 chrY 265253 265459 -51248125 - L1M4c LINE L1 -2144 4282 4078 2032 136 3 16 chrY 265459 265768 -51247816 - AluSq SINE Alu -8 305 1 1954 137 3 45 chrY 265778 266092 -51247492 - AluSx SINE Alu -11 301 1 2855 242 70 68 chrY 266092 266215 -51247369 - L1M4c LINE L1 -2356 4070 3949 1330 230 42 11 chrY 266215 266498 -51247086 - AluJo SINE Alu -20 292 1 2855 242 70 68 chrY 266498 266615 -51246969 - L1M4c LINE L1 -2477 3949 3834 1624 202 14 3 chrY 266615 266966 -51246618 - L1PA16 LINE L1 -14 6152 5798 2855 242 70 68 chrY 266966 267128 -51246456 - L1M4c LINE L1 -2592 3834 3674 1928 141 17 7 chrY 267128 267419 -51246165 - AluSx SINE Alu -18 294 1 2855 242 70 68 chrY 267419 267631 -51245953 - L1M4c LINE L1 -2752 3674 3464 2069 102 6 67 chrY 267631 267946 -51245638 - AluY SINE Alu -15 296 1 2855 242 70 68 chrY 267946 268215 -51245369 - L1M4c LINE L1 -2962 3464 3197 491 258 0 23 chrY 268215 268343 -51245241 - FLAM_A SINE Alu -8 125 1 2855 242 70 68 chrY 268343 268791 -51244793 - L1M4c LINE L1 -3229 3197 2751 9150 176 28 11 chrY 268791 269105 -51244479 - L1PA13 LINE L1 -4 6159 5852 2288 121 0 0 chrY 269105 269412 -51244172 - AluSg SINE Alu -3 307 1 9150 176 28 11 chrY 269412 269913 -51243671 - L1PA13 LINE L1 -311 5852 5361 2419 89 0 3 chrY 269913 270215 -51243369 - AluY SINE Alu -10 301 1 9150 176 28 11 chrY 270215 272025 -51241559 - L1PA13 LINE L1 -802 5361 3479 2855 242 70 68 chrY 272025 272220 -51241364 - L1M4c LINE L1 -3675 2751 2523 195 129 0 0 chrY 272298 272329 -51241255 + (T)n Simple_repeat Simple_repeat 1 31 0 1727 184 21 0 chrY 272344 272632 -51240952 - AluSx SINE Alu -12 300 7 645 186 108 44 chrY 272655 272950 -51240634 - L1M4c LINE L1 -3979 2449 2136 582 208 26 3 chrY 273010 273183 -51240401 - L1M4c LINE L1 -4707 1721 1539 251 306 22 30 chrY 273210 273344 -51240240 - L1M4c LINE L1 -6008 349 217 260 171 26 118 chrY 273407 273483 -51240101 + MER5A DNA MER1_type 121 189 0 2177 133 0 3 chrY 273577 273885 -51239699 + AluSx SINE Alu 1 307 -5 229 311 0 0 chrY 274418 274492 -51239092 + (TATG)n Simple_repeat Simple_repeat 3 76 0 928 147 179 62 chrY 274705 274929 -51238655 - AluJb SINE Alu -54 258 9 399 188 134 0 chrY 274973 275085 -51238499 - L1 LINE L1 -1286 4860 4734 3391 196 57 82 chrY 275640 276340 -51237244 - L1 LINE L1 -1913 4233 3491 493 191 0 0 chrY 276340 276424 -51237160 - AluJb SINE Alu -17 295 212 3391 196 57 82 chrY 276424 276885 -51236699 - L1 LINE L1 -2655 3491 3020 2619 207 52 3 chrY 276898 277532 -51236052 + L1MA7 LINE L1 5615 6279 -12 359 218 0 0 chrY 277533 277620 -51235964 + L1MB2 LINE L1 6051 6137 -34 3867 129 25 134 chrY 277759 279308 -51234276 - pTR5 LTR ERV1 0 2606 1524 548 160 109 51 chrY 279761 279917 -51233667 + MER65A LTR ERV1 2 166 -279 1991 173 70 2 chrY 280032 280431 -51233153 - MSTA LTR MaLR -2 426 1 943 174 26 10 chrY 280449 280759 -51232825 + MER65A LTR ERV1 166 445 0 502 145 13 0 chrY 280830 280906 -51232678 - AluS SINE Alu -230 82 6 591 259 112 0 chrY 280926 281212 -51232372 + L1MB2 LINE L1 4105 4422 -1724 1753 164 7 14 chrY 281214 281506 -51232078 - AluSp SINE Alu -22 291 2 2072 203 46 5 chrY 281506 282467 -51231117 + L1MB2 LINE L1 5121 6163 -8 2675 148 93 22 chrY 282803 283359 -51230225 + LTR4 LTR ERV1 1 596 0 12080 160 55 21 chrY 283359 285585 -51227999 + HERV3 LTR ERV1 2 2302 -6124 1819 252 5 2 chrY 285598 286022 -51227562 + HERV3 LTR ERV1 2729 3153 -5273 2271 126 12 0 chrY 286037 286378 -51227206 + HERV3 LTR ERV1 5421 5765 -2661 2311 143 24 7 chrY 286378 286798 -51226786 + LTR4 LTR ERV1 170 596 0 455 315 79 57 chrY 287148 287589 -51225995 + LTR67 LTR ERVL 2 452 -105 283 284 46 0 chrY 287716 287825 -51225759 - LTR33 LTR ERVL -41 480 367 420 311 74 26 chrY 288090 288402 -51225182 + LTR40b LTR ERVL 135 461 -1 453 291 97 0 chrY 288461 288657 -51224927 - LTR33 LTR ERVL -306 215 1 6806 204 149 15 chrY 288959 290507 -51223077 - MER52A LTR ERV1 0 1755 1 516 206 41 0 chrY 290551 290648 -51222936 + AluJ/FLAM SINE Alu 1 101 -211 27 49 0 0 chrY 291500 291541 -51222043 + AT_rich Low_complexity Low_complexity 1 41 0 432 258 55 73 chrY 291914 292352 -51221232 - L1MC5 LINE L1 -368 7593 7164 379 219 0 0 chrY 292375 292457 -51221127 + MER45A DNA AcHobo 97 178 0 2603 133 36 2 chrY 292756 293200 -51220384 - MER4E-int LTR ERV1 -6299 459 1 4791 104 33 13 chrY 293200 293751 -51219833 - MER4E LTR ERV1 0 766 195 1607 161 8 4 chrY 293751 294006 -51219578 + AluY SINE Alu 39 294 -17 4791 104 33 13 chrY 294006 294205 -51219379 - MER4E LTR ERV1 -571 195 1 1221 201 21 61 chrY 294250 294579 -51219005 - LTR62 LTR ERVK -403 316 1 2248 102 0 3 chrY 294779 295082 -51218502 - AluY SINE Alu -9 302 1 252 167 0 0 chrY 295114 295162 -51218422 + (TTCA)n Simple_repeat Simple_repeat 1 48 0 230 158 18 35 chrY 295184 295241 -51218343 - LTR56 LTR ERV1 -381 64 9 2485 195 46 20 chrY 295342 295933 -51217651 - MER4B LTR ERV1 -4 606 1 410 159 53 61 chrY 296026 296158 -51217426 - MER4B-int LTR ERV1 -151 4972 4842 383 145 0 0 chrY 296237 296299 -51217285 - MER4A LTR ERV1 0 664 603 1731 89 12 0 chrY 296299 296558 -51217026 - L1P LINE L1 -1332 4814 4553 1808 102 0 37 chrY 296558 296852 -51216732 - L1P LINE L1 -2229 3917 3635 3528 99 25 14 chrY 296855 297419 -51216165 - L1P LINE L1 -1635 4511 3942 1581 205 7 13 chrY 297613 297916 -51215668 - AluSx SINE Alu -11 301 1 1896 157 14 0 chrY 297956 298250 -51215334 - AluSq SINE Alu -14 299 2 1227 70 0 64 chrY 299550 299737 -51213847 - AluY SINE Alu -24 287 113 3386 160 56 3 chrY 299783 300395 -51213189 - LTR9B LTR ERV1 0 644 1 2388 69 3 31 chrY 300906 301226 -51212358 + AluY SINE Alu 1 311 0 880 168 125 87 chrY 302299 302620 -51210964 - LTR56 LTR ERV1 -108 337 5 203 269 177 28 chrY 302799 302940 -51210644 - MIR SINE MIR -34 228 67 2034 193 7 7 chrY 303002 303452 -51210132 - L1PA13 LINE L1 -4590 2197 1748 591 115 10 10 chrY 303450 303554 -51210030 - L1PA13 LINE L1 -6625 162 59 * 3883 142 29 5 chrY 303557 304203 -51209381 - PABL_B LTR ERV1 -5 662 1 261 218 0 0 chrY 304204 304259 -51209325 - L1PA13 LINE L1 -6732 55 1 1988 265 89 44 chrY 304437 304857 -51208727 - L1 LINE L1 -2012 5553 5154 2124 120 0 25 chrY 304857 305173 -51208411 - AluSc SINE Alu -1 308 1 1988 265 89 44 chrY 305173 305283 -51208301 - L1 LINE L1 -2411 5154 5050 1755 163 11 0 chrY 305283 305559 -51208025 - AluSx SINE Alu -33 279 1 1988 265 89 44 chrY 305559 306838 -51206746 - L1 LINE L1 -2515 5050 3653 24 85 0 0 chrY 306868 306927 -51206657 + AT_rich Low_complexity Low_complexity 1 59 0 41862 65 3 2 chrY 307219 313361 -51200223 - L1PA6 LINE L1 -1 6153 3 10949 179 57 10 chrY 313362 315546 -51198038 - L1 LINE L1 -4220 3345 1060 841 153 6 6 chrY 315552 315715 -51197869 + CT-rich Low_complexity Low_complexity 3 165 0 852 194 19 0 chrY 315718 315878 -51197706 - AluSg/x SINE Alu -5 307 145 581 214 40 0 chrY 316493 316619 -51196965 - MLT1A1 LTR MaLR 0 365 235 1218 211 146 44 chrY 317519 317931 -51195653 + MSTB2 LTR MaLR 4 457 0 216 298 160 0 chrY 317948 318042 -51195542 - MIR SINE MIR -66 196 88 1743 167 3 16 chrY 318168 318474 -51195110 - AluSx SINE Alu 0 312 11 214 273 0 0 chrY 318559 318603 -51194981 - MER5B DNA MER1_type -1 177 134 909 203 5 0 chrY 318612 318799 -51194785 + L1PA15 LINE L1 5972 6159 -6 5413 134 25 17 chrY 318799 319727 -51193857 + L1MA2 LINE L1 5369 6303 -1 24 32 0 0 chrY 319787 319818 -51193766 + AT_rich Low_complexity Low_complexity 1 31 0 1967 154 31 58 chrY 319853 320301 -51193283 + LTR19A LTR ERV1 1 436 -50 1536 142 3 75 chrY 320301 320583 -51193001 - AluJb SINE Alu -36 276 15 901 333 23 26 chrY 320723 321150 -51192434 - LTR16B LTR ERVL -2 462 37 254 232 18 0 chrY 321277 321333 -51192251 + MLT1J LTR MaLR 110 166 -345 183 80 0 0 chrY 321560 321585 -51191999 + (A)n Simple_repeat Simple_repeat 1 25 0 366 145 0 0 chrY 321587 321649 -51191935 + LTR19A LTR ERV1 425 486 0 1843 171 7 0 chrY 321877 322170 -51191414 - AluSx SINE Alu -17 295 1 210 37 0 0 chrY 322483 322510 -51191074 + (TTG)n Simple_repeat Simple_repeat 1 27 0 683 268 145 11 chrY 323044 323313 -51190271 - MER2 DNA MER2_type -1 344 40 536 241 96 8 chrY 323627 323816 -51189768 + L1MB4 LINE L1 5907 6120 -60 942 242 33 5 chrY 323820 324031 -51189553 + AluJo SINE Alu 78 294 -18 2655 236 64 70 chrY 324123 325541 -51188043 - L1MD1 LINE L1 -10 6232 4822 185 333 16 57 chrY 325580 325703 -51187881 + MIR SINE MIR 43 160 -102 213 121 0 0 chrY 327184 327217 -51186367 + (TCCC)n Simple_repeat Simple_repeat 4 36 0 * 973 199 106 43 chrY 327216 327679 -51185905 - AluJo SINE Alu 0 493 13 10078 150 29 5 chrY 327707 330280 -51183304 - L1PA10 LINE L1 -3 6165 3551 15113 156 29 47 chrY 330284 336854 -51176730 - L1PB1 LINE L1 -278 6589 127 180 392 65 30 chrY 336922 337154 -51176430 - L2 LINE L2 -582 2732 2493 38 39 0 0 chrY 337265 337317 -51176267 + AT_rich Low_complexity Low_complexity 1 52 0 308 298 33 8 chrY 338031 338152 -51175432 + L2 LINE L2 2934 3057 -215 217 132 26 0 chrY 338799 338837 -51174747 - L2 LINE L2 -3 3310 3272 3923 214 55 33 chrY 341512 342005 -51171579 - L1MC2 LINE L1 -2 6342 5861 2412 71 13 0 chrY 342005 342314 -51171270 - AluSp SINE Alu 0 313 1 3923 214 55 33 chrY 342314 343506 -51170078 - L1MC2 LINE L1 -483 5861 4617 24 0 0 0 chrY 343550 343574 -51170010 + AT_rich Low_complexity Low_complexity 1 24 0 29 0 0 0 chrY 344042 344071 -51169513 + AT_rich Low_complexity Low_complexity 1 29 0 25 0 0 0 chrY 344118 344143 -51169441 + AT_rich Low_complexity Low_complexity 1 25 0 195 42 0 0 chrY 344155 344179 -51169405 + (TG)n Simple_repeat Simple_repeat 2 25 0 24 32 0 0 chrY 344717 344748 -51168836 + AT_rich Low_complexity Low_complexity 1 31 0 234 62 0 0 chrY 345379 345411 -51168173 + (TTTTG)n Simple_repeat Simple_repeat 1 32 0 352 100 0 0 chrY 345418 345468 -51168116 - Alu SINE Alu -27 274 225 942 168 7 0 chrY 345468 345617 -51167967 - AluSq SINE Alu -160 153 4 2472 57 0 7 chrY 346421 346719 -51166865 - AluY SINE Alu -15 296 1 1030 281 44 19 chrY 346757 347074 -51166510 + L1MCc LINE L1 892 1216 -5207 324 265 144 8 chrY 347136 347268 -51166316 + Zaphod DNA AcHobo 3854 4003 -28 266 276 80 35 chrY 347549 347748 -51165836 - L1M4 LINE L1 -611 5573 5366 258 253 63 25 chrY 347759 347838 -51165746 - L2 LINE L2 -1 3312 3231 1111 267 48 23 chrY 349364 349805 -51163779 - MLT1H LTR MaLR 0 549 75 3591 222 23 15 chrY 349816 350890 -51162694 + L1P4 LINE L1 4398 5476 -689 645 124 10 0 chrY 350930 351027 -51162557 + AluY SINE Alu 95 192 -119 2430 137 15 33 chrY 351028 351455 -51162129 - L1PA16 LINE L1 -261 5905 5485 2373 96 3 0 chrY 351455 351767 -51161817 - AluSp SINE Alu 0 313 1 2430 137 15 33 chrY 351767 351793 -51161791 - L1PA16 LINE L1 -681 5485 5460 1517 97 0 0 chrY 351793 352007 -51161577 + L1PA14 LINE L1 5942 6157 -4 984 285 40 14 chrY 352135 352559 -51161025 - L1M4 LINE L1 -2448 3698 3264 192 40 0 0 chrY 352616 352641 -51160943 + (ATG)n Simple_repeat Simple_repeat 2 26 0 23 0 0 0 chrY 352695 352718 -51160866 + AT_rich Low_complexity Low_complexity 1 23 0 230 303 0 15 chrY 352756 352822 -51160762 - MIR SINE MIR -165 97 33 804 198 48 52 chrY 352867 353119 -51160465 + pTR5 LTR ERV1 743 993 -1445 3949 118 72 35 chrY 353186 353848 -51159736 + LTR12 LTR ERV1 1 687 -1 1656 155 11 11 chrY 353928 354199 -51159385 + AluSx SINE Alu 1 271 -41 277 118 43 21 chrY 354201 354294 -51159290 + (TTATA)n Simple_repeat Simple_repeat 5 99 0 370 296 91 26 chrY 354776 355006 -51158578 - L1ME4a LINE L1 -179 5942 5698 222 37 0 0 chrY 355008 355035 -51158549 + (TG)n Simple_repeat Simple_repeat 2 28 0 1608 186 13 13 chrY 355239 355550 -51158034 - AluJo SINE Alu -1 311 1 30 27 0 0 chrY 355609 355646 -51157938 + AT_rich Low_complexity Low_complexity 1 37 0 1858 183 70 79 chrY 355996 356555 -51157029 - MLT2B3 LTR ERVL 0 554 1 266 255 106 21 chrY 356987 357081 -51156503 + MIR SINE MIR 124 225 -37 321 201 43 30 chrY 358376 358540 -51155044 + (TA)n Simple_repeat Simple_repeat 2 167 0 210 208 0 0 chrY 358546 358594 -51154990 + (CATATA)n Simple_repeat Simple_repeat 5 52 0 1491 157 36 25 chrY 358705 358985 -51154599 + AluJo SINE Alu 12 294 -18 1029 194 16 42 chrY 359167 359389 -51154195 + L1MDa LINE L1 1106 1319 -5221 1875 218 5 20 chrY 359389 359789 -51153795 + MSTD LTR MaLR 3 396 0 1029 194 16 42 chrY 359789 359875 -51153709 + L1MDa LINE L1 1319 1406 -5134 315 202 36 24 chrY 359895 359979 -51153605 + MER45C DNA AcHobo 528 612 -341 1050 251 31 0 chrY 360193 360616 -51152968 - L1M4 LINE L1 -2961 3185 2750 698 273 80 0 chrY 360623 360861 -51152723 + L1MDa LINE L1 2931 3187 -3353 201 175 0 0 chrY 360950 360990 -51152594 + (TA)n Simple_repeat Simple_repeat 1 40 0 486 170 98 45 chrY 360992 361104 -51152480 + Tigger7 DNA MER2_type 2370 2487 0 465 253 19 6 chrY 361104 361266 -51152318 - L1MCa LINE L1 -3712 2714 2551 424 171 0 0 chrY 361291 361379 -51152205 - L1MA4 LINE L1 0 6300 6213 613 189 12 30 chrY 361379 361531 -51152053 - L1MCa LINE L1 -3892 2536 2414 796 266 40 0 chrY 361774 361951 -51151633 + L1PA13 LINE L1 1 184 -6603 2240 232 18 11 chrY 361963 362510 -51151074 + L1PA13 LINE L1 1728 2278 -4509 281 132 0 19 chrY 362549 362602 -51150982 + (TA)n Simple_repeat Simple_repeat 1 52 0 231 186 0 17 chrY 362603 362662 -51150922 - L1MCa LINE L1 -4363 2063 2006 231 186 0 17 chrY 362687 362746 -51150838 - L1MCa LINE L1 -4363 2063 2006 188 108 0 27 chrY 362750 362787 -51150797 + (TA)n Simple_repeat Simple_repeat 2 37 0 311 270 0 0 chrY 362787 362861 -51150723 + L1PA13 LINE L1 2376 2449 -4348 5392 144 6 2 chrY 362861 364407 -51149177 + L1PA15 LINE L1 4593 6146 -19 418 343 33 9 chrY 364475 364685 -51148899 - L1M4 LINE L1 -1548 4598 4384 24 0 0 0 chrY 364696 364720 -51148864 + AT_rich Low_complexity Low_complexity 1 24 0 5153 203 16 19 chrY 364808 366952 -51146632 - L1PA15 LINE L1 -16 6149 4020 325 71 0 0 chrY 366946 366988 -51146596 - L1P LINE L1 -972 5174 5133 * 529 263 41 0 chrY 367007 367178 -51146406 + L1M4b LINE L1 1326 1503 -5356 7236 214 17 67 chrY 367213 367943 -51145641 - L1P LINE L1 -1023 5123 4358 1689 168 16 13 chrY 367943 368246 -51145338 - AluJb SINE Alu -4 308 5 7236 214 17 67 chrY 368246 368453 -51145131 - L1P LINE L1 -1788 4358 4142 3858 107 32 11 chrY 368453 369080 -51144504 + MER51C LTR ERV1 1 640 0 7236 214 17 67 chrY 369080 370336 -51143248 - L1P LINE L1 -2004 4142 3039 2083 297 69 25 chrY 370341 371718 -51141866 - L1M4b LINE L1 -5331 1528 12 1973 122 20 3 chrY 372113 372416 -51141168 + AluSg SINE Alu 1 308 -2 305 369 20 30 chrY 372951 373149 -51140435 + L1 LINE L1 3631 3826 -2320 418 195 35 44 chrY 373484 373597 -51139987 + Charlie4 DNA MER1_type 1835 1946 -15 417 331 24 52 chrY 373609 373857 -51139727 + LTR33 LTR ERVL 260 500 -21 944 313 74 18 chrY 375126 375516 -51138068 - L2 LINE L2 -447 2867 2456 207 204 0 0 chrY 375604 375648 -51137936 + GA-rich Low_complexity Low_complexity 3 46 0 514 179 28 9 chrY 375811 375917 -51137667 - L1MA1 LINE L1 -4 6298 6191 809 287 35 8 chrY 376116 376370 -51137214 - L2 LINE L2 -853 2461 2201 189 0 0 0 chrY 376742 376763 -51136821 + (CA)n Simple_repeat Simple_repeat 2 22 0 2942 115 23 6 chrY 378467 378947 -51134637 - L1MA3 LINE L1 0 6305 5818 362 85 17 0 chrY 379419 379478 -51134106 + (TAGA)n Simple_repeat Simple_repeat 2 61 0 2122 245 32 14 chrY 379480 380009 -51133575 - MLT2B3 LTR ERVL -19 507 1 1077 95 25 0 chrY 380254 380412 -51133172 - L1MA3 LINE L1 0 6305 6144 225 94 0 0 chrY 380413 380445 -51133139 + L1MA3 LINE L1 5929 5960 -345 1523 197 42 52 chrY 380627 381033 -51132551 - MER39 LTR ERV1 0 707 306 1387 173 54 45 chrY 381234 381454 -51132130 - MER44D DNA MER2_type -1883 608 391 213 39 0 0 chrY 381454 381480 -51132104 + (TC)n Simple_repeat Simple_repeat 1 26 0 1387 173 54 45 chrY 381480 381594 -51131990 - MER44D DNA MER2_type -2100 391 1 541 176 11 0 chrY 382190 382281 -51131303 + MLT1D LTR MaLR 1 92 -413 247 303 55 9 chrY 382441 382550 -51131034 - L1ME LINE L1 -477 5644 5531 324 0 0 0 chrY 382662 382698 -51130886 + (TG)n Simple_repeat Simple_repeat 2 37 0 677 243 87 0 chrY 382763 382936 -51130648 + MER20 DNA MER1_type 31 218 -1 238 136 17 17 chrY 383313 383372 -51130212 + (TG)n Simple_repeat Simple_repeat 2 60 0 532 297 25 29 chrY 383556 383808 -51129776 - L1ME3A LINE L1 -290 5880 5669 329 259 133 7 chrY 383824 383959 -51129625 - Charlie2a DNA MER1_type 0 2862 2711 * 467 247 77 12 chrY 383955 384125 -51129459 - Charlie2a DNA MER1_type -1200 1662 1482 399 325 81 10 chrY 384337 384534 -51129050 - Charlie2a DNA MER1_type -2555 307 97 616 295 89 47 chrY 384796 385199 -51128385 - LTR38 LTR ERV1 0 556 137 339 338 92 29 chrY 385258 385978 -51127606 - L1ME LINE L1 -749 5397 4633 348 309 65 22 chrY 386044 386458 -51127126 - L1ME LINE L1 -3158 2988 2557 404 236 11 0 chrY 386513 386602 -51126982 - Tigger5 DNA MER2_type 0 2323 2234 362 233 0 0 chrY 386653 386726 -51126858 - Tigger5 DNA MER2_type 0 2323 2251 240 284 0 0 chrY 386745 386819 -51126765 + (TA)n Simple_repeat Simple_repeat 2 75 0 258 278 0 0 chrY 386900 386990 -51126594 - L1ME LINE L1 -3783 2363 2274 22 56 0 0 chrY 387695 387731 -51125853 + AT_rich Low_complexity Low_complexity 1 36 0 24 53 0 0 chrY 388148 388186 -51125398 + AT_rich Low_complexity Low_complexity 1 38 0 9287 207 15 18 chrY 388535 389799 -51123785 + L1P LINE L1 2304 3560 -2586 255 103 0 0 chrY 389799 389838 -51123746 + (TG)n Simple_repeat Simple_repeat 2 40 0 9287 207 15 18 chrY 389838 390630 -51122954 + L1P LINE L1 3560 4353 -1793 439 319 79 37 chrY 390799 391370 -51122214 - L1ME3A LINE L1 -300 5870 5276 255 255 125 25 chrY 391407 391607 -51121977 - L1ME3A LINE L1 -913 5233 5014 266 91 0 55 chrY 391622 391677 -51121907 - AluSp/q SINE Alu -5 298 247 2206 123 0 0 chrY 391941 392250 -51121334 - AluSx SINE Alu -3 309 1 757 231 72 57 chrY 392860 393218 -51120366 + MLT2B2 LTR ERVL 1 453 -62 476 26 65 0 chrY 393218 393295 -51120289 + (TCTA)n Simple_repeat Simple_repeat 3 84 0 757 231 72 57 chrY 393295 393359 -51120225 + MLT2B2 LTR ERVL 453 515 0 315 258 88 57 chrY 393397 393591 -51119993 - L1ME3A LINE L1 -1664 4482 4283 320 358 95 15 chrY 393889 394163 -51119421 - L1ME3A LINE L1 -1834 4312 4017 267 336 88 15 chrY 394286 394628 -51118956 - L1ME3A LINE L1 -2227 3919 3553 443 224 195 29 chrY 394756 395002 -51118582 - L1ME3A LINE L1 -2664 3482 3196 538 259 92 80 chrY 395014 395438 -51118146 + LTR68 LTR ERV1 1 429 -311 423 215 86 57 chrY 395588 395797 -51117787 - L1ME3A LINE L1 -2961 3185 2971 1259 260 34 47 chrY 396101 396313 -51117271 - L1MD2 LINE L1 -2 6357 6144 1909 160 3 6 chrY 396313 396625 -51116959 - AluSx SINE Alu -1 311 1 1259 260 34 47 chrY 396625 396855 -51116729 - L1MD2 LINE L1 -215 6144 5921 555 128 0 0 chrY 396937 397023 -51116561 - L1P4 LINE L1 -523 5638 5553 753 103 8 23 chrY 397033 397303 -51116281 + (TA)n Simple_repeat Simple_repeat 1 266 0 2961 136 12 10 chrY 397303 397804 -51115780 + L1PA14 LINE L1 5658 6159 -2 627 257 229 43 chrY 398073 398353 -51115231 + L1M4b LINE L1 91 422 -6437 527 265 73 0 chrY 398364 398500 -51115084 + L1M4b LINE L1 1130 1275 -5584 2145 273 45 11 chrY 398532 399495 -51114089 - L1MDb LINE L1 -2935 3471 2477 226 176 39 0 chrY 399475 399526 -51114058 + L1MA9 LINE L1 6254 6306 -6 * 1217 255 45 48 chrY 399535 400410 -51113174 - L1MDb LINE L1 -3900 2508 1543 2242 153 50 13 chrY 400433 400898 -51112686 - L1MA3 LINE L1 0 6305 5824 212 158 0 0 chrY 400941 400979 -51112605 + (CAAA)n Simple_repeat Simple_repeat 3 40 0 6157 220 49 10 chrY 401057 402439 -51111145 + L1M3 LINE L1 118 1553 -5310 4373 120 1 3 chrY 402438 403094 -51110490 + L1PB2 LINE L1 5380 6034 -117 * 2190 198 34 15 chrY 403101 403944 -51109640 + L1M3 LINE L1 5564 6426 -458 381 287 41 0 chrY 403943 404115 -51109469 - L1MDb LINE L1 -5542 867 663 * 274 335 151 11 chrY 404124 404309 -51109275 - L1MDb LINE L1 -5822 587 377 * 1263 309 60 35 chrY 404295 404859 -51108725 - L1MDb LINE L1 -5810 599 22 350 325 13 44 chrY 404896 405036 -51108548 - L1MEc LINE L1 -3611 2518 2386 1378 259 117 45 chrY 405036 405618 -51107966 - MLT1E2 LTR MaLR -2 624 1 350 325 13 44 chrY 405618 405705 -51107879 - L1MEc LINE L1 -3743 2386 2298 489 334 119 39 chrY 405743 406678 -51106906 - L1MEc LINE L1 -4049 2261 1252 391 267 62 12 chrY 406739 406935 -51106649 - L1MEc LINE L1 -4969 1150 947 23 0 0 0 chrY 406939 406962 -51106622 + AT_rich Low_complexity Low_complexity 1 23 0 362 291 72 66 chrY 407929 408300 -51105284 - L1MEc LINE L1 -5146 989 571 324 308 0 0 chrY 408579 408696 -51104888 - MER103 DNA DNA -48 118 2 231 61 0 0 chrY 408953 408986 -51104598 + (CA)n Simple_repeat Simple_repeat 2 34 0 1310 158 45 17 chrY 410908 411200 -51102384 + L1MA8 LINE L1 5987 6286 -5 1836 134 113 30 chrY 411956 412292 -51101292 + THE1B LTR MaLR 1 364 0 417 208 40 40 chrY 412718 412843 -51100741 + MER112 DNA MER1_type 84 208 -52 22 70 0 0 chrY 413018 413061 -51100523 + AT_rich Low_complexity Low_complexity 1 43 0 21 36 0 0 chrY 413195 413223 -51100361 + AT_rich Low_complexity Low_complexity 1 28 0 221 327 93 9 chrY 413534 413641 -51099943 + L2 LINE L2 3153 3268 -4 192 150 50 0 chrY 413705 413745 -51099839 + L2 LINE L2 3271 3312 -1 734 239 35 70 chrY 414397 414656 -51098928 - L1ME2 LINE L1 -1 6163 5914 381 275 50 39 chrY 414659 414939 -51098645 - L1ME2 LINE L1 -329 5835 5553 235 364 35 38 chrY 415433 415611 -51097973 + MIR3 SINE MIR 18 167 -41 942 247 56 3 chrY 416829 417181 -51096403 - L1MC3 LINE L1 -201 6143 5742 758 153 0 0 chrY 417191 417315 -51096269 - L1PA15 LINE L1 -3 6162 6039 4387 101 38 0 chrY 417492 418128 -51095456 + HERVL-A2 LTR ERVL 4995 5654 0 429 102 0 0 chrY 418128 418187 -51095397 + MLT2A2 LTR ERVL 1 59 -394 3180 139 5 10 chrY 418187 418748 -51094836 - L1PA15 LINE L1 -386 5779 5220 * 3728 216 29 1 chrY 418745 419550 -51094034 + L1P LINE L1 1831 2657 -3489 556 245 95 15 chrY 419590 419883 -51093701 - MER52A LTR ERV1 -148 894 275 680 257 29 11 chrY 419924 420099 -51093485 - LTR28 LTR ERV1 -842 178 1 1294 245 17 0 chrY 420101 420448 -51093136 + L1P LINE L1 2660 3012 -3134 2007 132 46 34 chrY 421872 422221 -51091363 - THE1B LTR MaLR -11 353 1 9496 137 75 0 chrY 422221 423691 -51089893 - THE1B-int LTR MaLR 0 1580 1 1949 146 36 36 chrY 423691 424054 -51089530 - THE1B LTR MaLR 0 364 2 388 325 34 3 chrY 424133 424273 -51089311 - MIR SINE MIR -63 145 25 183 364 24 73 chrY 424266 424472 -51089112 + L2 LINE L2 2438 2633 -681 * 1168 268 47 14 chrY 424799 425054 -51088530 + L1ME1 LINE L1 4822 5067 -1079 552 100 0 0 chrY 425054 425134 -51088450 + (TA)n Simple_repeat Simple_repeat 1 80 0 1168 268 47 14 chrY 425134 425371 -51088213 + L1ME1 LINE L1 5067 5330 -816 2051 156 43 0 chrY 425379 425726 -51087858 - THE1B LTR MaLR -2 362 1 8356 124 115 40 chrY 425726 427196 -51086388 - THE1B-int LTR MaLR 0 1580 1 2570 123 0 3 chrY 427196 427561 -51086023 - THE1B LTR MaLR 0 364 1 1574 281 78 33 chrY 427565 427901 -51085683 + L1ME1 LINE L1 5333 5652 -514 315 0 0 0 chrY 427901 427936 -51085648 + (CA)n Simple_repeat Simple_repeat 2 36 0 1574 281 78 33 chrY 427936 428378 -51085206 + L1ME1 LINE L1 5652 6146 -20 18128 181 30 15 chrY 428528 436134 -51077450 - L1MA1 LINE L1 0 7721 7 328 350 13 32 chrY 436267 436424 -51077160 - L2 LINE L2 -12 3301 3148 2925 199 24 13 chrY 436424 437043 -51076541 - MSTB-int LTR MaLR -992 659 34 1531 231 81 13 chrY 437062 437456 -51076128 - MSTB LTR MaLR -5 421 1 21 36 0 0 chrY 438118 438146 -51075438 + AT_rich Low_complexity Low_complexity 1 28 0 1146 207 97 60 chrY 438693 439045 -51074539 + MLT1A1 LTR MaLR 1 365 0 1417 239 0 13 chrY 439299 439613 -51073971 + AluJo SINE Alu 1 310 -2 21 57 0 0 chrY 439804 439839 -51073745 + AT_rich Low_complexity Low_complexity 1 35 0 23 78 0 0 chrY 440133 440184 -51073400 + AT_rich Low_complexity Low_complexity 1 51 0 34 0 0 0 chrY 440681 440715 -51072869 + AT_rich Low_complexity Low_complexity 1 34 0 2262 147 39 0 chrY 440959 441320 -51072264 - THE1C LTR MaLR 0 375 1 8822 136 57 37 chrY 441320 442870 -51070714 - THE1C-int LTR MaLR 0 1580 1 2573 121 5 0 chrY 442870 443243 -51070341 - THE1C LTR MaLR 0 375 1 28 86 0 0 chrY 443789 443859 -51069725 + AT_rich Low_complexity Low_complexity 1 70 0 39 38 0 0 chrY 443937 443990 -51069594 + AT_rich Low_complexity Low_complexity 1 53 0 21 36 0 0 chrY 444615 444643 -51068941 + AT_rich Low_complexity Low_complexity 1 28 0 1518 218 0 19 chrY 444942 445249 -51068335 - AluJb SINE Alu -9 303 3 2001 127 3 13 chrY 445262 445561 -51068023 - AluSp SINE Alu -17 296 1 8175 204 19 2 chrY 445781 447308 -51066276 - THE1C-int LTR MaLR -98 1553 1 1754 196 132 8 chrY 447308 447686 -51065898 - MSTA LTR MaLR -2 426 2 453 275 92 34 chrY 449124 449714 -51063870 + L1MEc LINE L1 1904 2487 -3728 2660 267 48 13 chrY 449813 450765 -51062819 - L1MB8 LINE L1 -2 6176 5187 3140 181 66 20 chrY 450786 451484 -51062100 - L1MA8 LINE L1 -4 7247 6518 2133 151 109 53 chrY 451498 451566 -51062018 + LOR1a LTR ERV1 1 64 -433 2631 147 95 42 chrY 451566 452145 -51061439 + LTR66 LTR ERVL 1 610 0 2133 151 109 53 chrY 452145 452165 -51061419 + LOR1a LTR ERV1 64 81 -416 2148 118 3 0 chrY 452165 452469 -51061115 - AluSp SINE Alu -8 305 1 2133 151 109 53 chrY 452469 452848 -51060736 + LOR1a LTR ERV1 81 495 -2 858 225 16 5 chrY 452849 453040 -51060544 - L1MA8 LINE L1 -2103 5003 4811 192 77 0 0 chrY 453040 453066 -51060518 + (TTA)n Simple_repeat Simple_repeat 2 27 0 1447 225 0 7 chrY 453068 453352 -51060232 - AluJo SINE Alu -30 282 1 553 162 27 0 chrY 453360 453471 -51060113 - L1MA8 LINE L1 -4977 2053 1940 2433 273 59 15 chrY 453500 454548 -51059036 - L1MB8 LINE L1 -1201 4945 3852 1876 169 14 6 chrY 454612 454956 -51058628 - L1PA15 LINE L1 -3 6813 6467 6910 59 10 2 chrY 454976 456125 -51057459 - L1PA7 LINE L1 -11 6143 4998 9619 226 30 11 chrY 456125 461291 -51052293 - L1PA15 LINE L1 -340 6476 1212 1000 281 59 23 chrY 461305 461968 -51051616 - L1MB8 LINE L1 -2354 3792 3106 1219 206 0 46 chrY 462318 462580 -51051004 + AluJb SINE Alu 1 250 -62 509 259 43 0 chrY 462599 462761 -51050823 + L1MA7 LINE L1 6111 6279 -12 21 0 0 0 chrY 462762 462783 -51050801 + AT_rich Low_complexity Low_complexity 1 21 0 401 308 70 29 chrY 462907 463491 -51050093 + L1MC/D LINE L1 4991 5600 -566 621 235 126 10 chrY 463514 463733 -51049851 - L1MCc LINE L1 -6105 836 68 288 281 79 6 chrY 463840 464004 -51049580 - L1MCc LINE L1 -4458 2483 2308 3229 141 30 20 chrY 464013 464554 -51049030 - MER41A LTR ERV1 -8 546 1 1941 127 27 3 chrY 464554 464854 -51048730 - MER41A-int LTR ERV1 -2 5944 5638 * 10164 139 40 25 chrY 464851 467610 -51045974 - MER41A-int LTR ERV1 -462 4553 2167 681 158 0 0 chrY 467609 467723 -51045861 - MER41A-int LTR ERV1 -3932 2014 1901 * 2453 160 27 13 chrY 467725 468315 -51045269 - MER41A-int LTR ERV1 -4231 3585 648 * 5262 140 47 6 chrY 468298 469122 -51044462 - MER41B-int LTR ERV1 -5087 859 2 1334 127 5 0 chrY 469123 469320 -51044264 - MER41B LTR ERV1 0 635 438 4464 77 106 2 chrY 469364 469987 -51043597 + LTR12 LTR ERV1 1 688 0 21 0 0 0 chrY 469994 470015 -51043569 + AT_rich Low_complexity Low_complexity 1 21 0 1114 218 306 10 chrY 470047 470442 -51043142 + MER101B LTR ERV1 8 519 -51 192 158 0 0 chrY 470584 470622 -51042962 + (CA)n Simple_repeat Simple_repeat 2 39 0 247 170 0 0 chrY 470641 470688 -51042896 - L1MCc LINE L1 -5104 1837 1791 859 293 90 47 chrY 470714 471389 -51042195 - L1MCc LINE L1 -4903 1520 817 336 288 37 122 chrY 471577 471980 -51041604 - L1MCc LINE L1 -5629 793 84 1748 252 103 18 chrY 472107 473298 -51040286 - L1MC4 LINE L1 -130 7912 6472 2260 105 0 3 chrY 474067 474363 -51039221 + AluSx SINE Alu 1 295 -17 1723 280 70 51 chrY 474537 475492 -51038092 + L1MC2 LINE L1 69 986 -5578 2055 140 24 3 chrY 475492 475828 -51037756 + MER61A LTR ERV1 1 343 0 1723 280 70 51 chrY 475828 476639 -51036945 + L1MC2 LINE L1 986 1781 -4783 1197 245 89 61 chrY 476646 477407 -51036177 + L1MC2 LINE L1 4222 4977 -1587 506 290 94 27 chrY 477458 477786 -51035798 - LTR43 LTR ERV1 -66 536 187 1274 248 55 30 chrY 478140 478669 -51034915 + L1MC2 LINE L1 4975 5516 -1048 1978 234 27 12 chrY 478672 479151 -51034433 + L1MC2 LINE L1 6275 6760 -2 838 216 16 0 chrY 479152 479342 -51034242 + L1MC3 LINE L1 5823 6015 -1770 342 235 79 36 chrY 479367 479623 -51033961 - L1ME LINE L1 -391 5773 5403 550 260 65 62 chrY 479757 479839 -51033745 - L1ME LINE L1 -875 5271 5191 186 43 0 0 chrY 479839 479862 -51033722 + (TTTC)n Simple_repeat Simple_repeat 2 24 0 2024 95 26 4 chrY 479864 480137 -51033447 - AluSx SINE Alu -31 281 3 550 260 65 62 chrY 480137 480451 -51033133 - L1ME LINE L1 -955 5191 4871 606 182 31 3 chrY 480507 480661 -51032923 - L1ME LINE L1 -2027 4119 3959 947 143 25 5 chrY 480661 480857 -51032727 + L1MA7 LINE L1 6092 6291 0 210 310 60 20 chrY 481068 481168 -51032416 - MIR SINE MIR -7 255 152 449 299 9 0 chrY 481170 481277 -51032307 + L2 LINE L2 3164 3271 -1 1670 176 71 31 chrY 481323 481647 -51031937 + MER1B DNA MER1_type 1 337 0 255 413 7 7 chrY 481980 482123 -51031461 + MER5B DNA MER1_type 3 145 -33 684 321 69 17 chrY 482155 482501 -51031083 + LTR16A LTR ERVL 46 409 -41 541 291 39 43 chrY 482527 482781 -51030803 + L1MDa LINE L1 17 269 -6271 491 272 0 6 chrY 483005 483185 -51030399 + L1MDa LINE L1 2746 2924 -3616 558 191 21 7 chrY 483190 483331 -51030253 + L1MB8 LINE L1 6017 6159 -19 1534 106 74 0 chrY 483345 483601 -51029983 - L1MA2 LINE L1 0 6304 6030 215 263 162 20 chrY 483704 483803 -51029781 + L2 LINE L2 3189 3301 -12 230 271 24 24 chrY 484065 484150 -51029434 + MLT1L LTR MaLR 1 85 -530 1692 193 21 47 chrY 484221 484646 -51028938 - MLT2D LTR ERVL 0 414 1 21242 224 32 26 chrY 484646 485096 -51028488 - ERVL-D LTR ERVL -7 5757 5311 1023 211 225 0 chrY 485096 485394 -51028190 + MER47A DNA MER2_type 1 365 -1 21242 224 32 26 chrY 485394 488390 -51025194 - ERVL-D LTR ERVL -453 5311 2333 2609 36 10 0 chrY 488390 488698 -51024886 - AluY SINE Alu 0 311 1 21242 224 32 26 chrY 488698 488742 -51024842 - ERVL-D LTR ERVL -3431 2333 2291 1946 116 75 36 chrY 488742 489103 -51024481 + THE1C LTR MaLR 1 375 0 21242 224 32 26 chrY 489103 491231 -51022353 - ERVL-D LTR ERVL -3473 2291 3 288 123 0 92 chrY 491233 491298 -51022286 - ERVL-D LTR ERVL 0 520 462 209 125 0 42 chrY 491309 491357 -51022227 + (TCTA)n Simple_repeat Simple_repeat 1 46 0 437 192 83 67 chrY 491360 491480 -51022104 - MLT2D LTR ERVL -48 366 245 395 259 9 9 chrY 491482 491594 -51021990 + L1M4 LINE L1 4849 4960 -1186 2126 126 3 7 chrY 491600 491909 -51021675 + AluSx SINE Alu 1 308 -4 620 220 163 63 chrY 491917 492249 -51021335 + LTR49-int LTR ERV1 1534 2112 -3834 1154 288 19 6 chrY 492328 492647 -51020937 + LTR49-int LTR ERV1 1908 2230 -4101 447 137 5 257 chrY 492861 492960 -51020624 - MER54A LTR ERVL -491 153 103 1177 65 7 0 chrY 492960 493115 -51020469 - L1MA1 LINE L1 -4 6298 6143 447 137 5 257 chrY 493115 493198 -51020386 - MER54A LTR ERVL -541 103 1 368 232 58 53 chrY 493317 493507 -51020077 + LTR49-int LTR ERV1 1290 1480 -3456 403 266 9 18 chrY 493641 493754 -51019830 + LTR49-int LTR ERV1 3260 3371 -2960 298 288 48 14 chrY 493943 494089 -51019495 + L1PA15-16 LINE L1 3 151 -6712 3618 165 6 40 chrY 494095 494775 -51018809 + L1PB3 LINE L1 5440 6096 -58 1117 126 10 94 chrY 494775 495074 -51018510 + L1PA5 LINE L1 5929 6166 -6 379 155 0 0 chrY 495074 495145 -51018439 + L1PB3 LINE L1 6081 6151 -3 328 145 0 0 chrY 495232 495294 -51018290 + MER39B-int LTR ERV1 2826 2887 -3871 579 243 16 58 chrY 495329 495518 -51018066 + MER39B-int LTR ERV1 6002 6182 -149 941 151 76 12 chrY 495577 495749 -51017835 + MER39B LTR ERV1 3 185 -468 440 217 54 23 chrY 495754 495883 -51017701 - LTR49-int LTR ERV1 -200 6131 5999 261 102 41 20 chrY 495895 495944 -51017640 + MER39B LTR ERV1 191 240 -413 1934 238 124 25 chrY 496031 496682 -51016902 - MER50 LTR ERV1 0 734 19 1902 204 25 10 chrY 496679 497086 -51016498 + MER39 LTR ERV1 295 707 0 * 3087 162 57 18 chrY 497223 497830 -51015754 + LTR29 LTR ERV1 6 653 0 1710 138 11 45 chrY 498466 498813 -51014771 - MER61B LTR ERV1 0 425 1 21 0 0 0 chrY 498870 498891 -51014693 + AT_rich Low_complexity Low_complexity 1 21 0 1824 171 73 14 chrY 498978 499322 -51014262 - THE1B LTR MaLR 0 364 1 11389 97 15 0 chrY 499322 500879 -51012705 - THE1B-int LTR MaLR 0 1580 1 1953 126 66 55 chrY 500879 501261 -51012323 - THE1B LTR MaLR 0 375 1 381 261 85 23 chrY 501329 501459 -51012125 + LTR48 LTR ERV1 1 138 -649 813 206 0 0 chrY 501470 501616 -51011968 - AluJb SINE Alu -18 294 149 2147 136 48 20 chrY 501616 501970 -51011614 - THE1B LTR MaLR 0 364 1 4504 133 17 4 chrY 501977 502670 -51010914 - MER4E LTR ERV1 0 779 78 552 237 17 0 chrY 502670 502788 -51010796 - AluJb SINE Alu -190 122 3 891 261 112 24 chrY 502800 503171 -51010413 + LTR29 LTR ERV1 152 556 -66 2377 220 53 70 chrY 503171 503699 -51009885 + LTR8A LTR ERV1 1 514 -213 2733 213 31 83 chrY 503699 504473 -51009111 - MER50 LTR ERV1 0 734 1 2377 220 53 70 chrY 504473 504684 -51008900 + LTR8A LTR ERV1 514 727 0 341 208 13 13 chrY 504684 504760 -51008824 + LTR49 LTR ERV1 520 595 0 1082 205 82 88 chrY 504761 505169 -51008415 - LTR48 LTR ERV1 -69 718 205 2308 71 0 0 chrY 505169 505452 -51008132 - AluY SINE Alu -2 309 27 1082 205 82 88 chrY 505452 505652 -51007932 - LTR48 LTR ERV1 -582 205 5 323 169 0 26 chrY 505889 505966 -51007618 + (TATG)n Simple_repeat Simple_repeat 2 76 0 191 244 217 78 chrY 506292 506407 -51007177 + MER5A DNA MER1_type 37 167 -22 1133 223 18 0 chrY 506886 507110 -51006474 - MER101B LTR ERV1 -341 229 2 30 69 0 0 chrY 507270 507328 -51006256 + AT_rich Low_complexity Low_complexity 1 58 0 1389 179 33 3 chrY 508133 508435 -51005149 - L1MA6 LINE L1 0 6300 5990 349 277 54 92 chrY 508507 508691 -51004893 + MER5B DNA MER1_type 2 178 0 26 30 0 0 chrY 508702 508735 -51004849 + AT_rich Low_complexity Low_complexity 1 33 0 22 94 0 0 chrY 509066 509130 -51004454 + AT_rich Low_complexity Low_complexity 1 64 0 25 0 0 0 chrY 509177 509202 -51004382 + AT_rich Low_complexity Low_complexity 1 25 0 * 2225 169 3 0 chrY 509202 509586 -51003998 - L1PB3 LINE L1 -3 6151 5767 5232 239 31 22 chrY 509586 512268 -51001316 - L1PBa LINE L1 -4208 2655 877 2195 114 74 0 chrY 512268 512619 -51000965 + MER51B LTR ERV1 1 377 0 5232 239 31 22 chrY 512619 513500 -51000084 - L1PBa LINE L1 -5986 877 5 503 224 10 0 chrY 513708 513806 -50999778 + FLAM_A SINE Alu 10 108 -34 234 363 0 22 chrY 514835 514926 -50998658 - L1MEd LINE L1 -5595 524 436 2013 151 0 3 chrY 514954 515252 -50998332 - AluJb SINE Alu -15 297 1 353 248 8 101 chrY 515339 515468 -50998116 - LTR4-int LTR ERV1 -2130 2061 1945 38693 133 19 13 chrY 515483 521428 -50992156 - LTR4-int LTR ERV1 -696 7730 1754 765 120 0 0 chrY 521428 521536 -50992048 - LTR4-int LTR ERV1 -6565 1861 1754 * 11333 128 32 39 chrY 521511 523419 -50990165 - LTR4-int LTR ERV1 -6531 1895 2 972 160 151 21 chrY 523419 523657 -50989927 - LTR4 LTR ERV1 0 596 328 228 238 12 71 chrY 523754 523838 -50989746 - LTR4 LTR ERV1 -239 357 279 2645 150 15 2 chrY 523939 524393 -50989191 + L1PA15 LINE L1 5705 6164 -1 241 391 23 0 chrY 524556 524643 -50988941 + MER91A DNA MER1_type 2 90 -106 238 200 43 0 chrY 524882 524952 -50988632 + (TA)n Simple_repeat Simple_repeat 2 74 0 309 319 62 12 chrY 525784 525944 -50987640 + L1M4 LINE L1 3605 3772 -2374 1712 218 128 26 chrY 525945 526529 -50987055 + LTR48B LTR ERV1 1 644 0 1981 132 13 26 chrY 526841 527151 -50986433 - AluSx SINE Alu -4 308 3 2021 147 0 0 chrY 527314 527607 -50985977 - AluSg SINE Alu -17 293 1 1193 285 49 35 chrY 527708 527771 -50985813 - L1ME2 LINE L1 -180 5984 5923 2178 109 0 3 chrY 527771 528074 -50985510 + AluY SINE Alu 3 304 -7 1193 285 49 35 chrY 528074 528606 -50984978 - L1ME2 LINE L1 -241 5923 5381 334 268 43 85 chrY 528610 528845 -50984739 - L1ME2 LINE L1 -1080 5066 4842 3049 154 4 53 chrY 528872 529515 -50984069 + MER4B LTR ERV1 1 779 0 229 306 67 67 chrY 529707 529962 -50983622 + L1ME LINE L1 458 712 -5493 21 0 0 0 chrY 529962 529983 -50983601 + AT_rich Low_complexity Low_complexity 1 21 0 1158 173 0 48 chrY 530091 530322 -50983262 + AluJo SINE Alu 86 305 -7 348 261 0 0 chrY 530333 530425 -50983159 + L1ME LINE L1 832 923 -5282 2302 261 65 16 chrY 530466 531683 -50981901 + L1ME LINE L1 2061 3301 -2914 21 36 0 0 chrY 531812 531840 -50981744 + AT_rich Low_complexity Low_complexity 1 28 0 27 0 0 0 chrY 533095 533122 -50980462 + AT_rich Low_complexity Low_complexity 1 27 0 934 111 0 0 chrY 533562 533697 -50979887 - AluSg/x SINE Alu -2 310 176 1709 122 4 4 chrY 533697 533943 -50979641 - AluSx SINE Alu -66 246 1 2564 122 41 14 chrY 534134 534551 -50979033 - MSTA LTR MaLR 0 428 1 22 0 0 0 chrY 534731 534753 -50978831 + AT_rich Low_complexity Low_complexity 1 22 0 1972 140 69 14 chrY 535561 535911 -50977673 - THE1C LTR MaLR -6 369 1 9750 114 37 36 chrY 535912 537490 -50976094 - THE1C-int LTR MaLR -1 1579 1 1948 140 83 14 chrY 537490 537841 -50975743 - THE1C LTR MaLR 0 375 1 835 379 27 15 chrY 537910 538316 -50975268 - L2 LINE L2 -2896 418 8 2087 164 65 12 chrY 538638 539041 -50974543 + MSTB LTR MaLR 3 426 0 7615 192 32 53 chrY 539048 539227 -50974357 + MSTB-int LTR MaLR 8 189 -1462 1320 156 141 15 chrY 539227 539496 -50974088 + AluSq SINE Alu 1 303 0 7615 192 32 53 chrY 539496 540671 -50972913 + MSTB-int LTR MaLR 189 1323 -328 2348 93 0 0 chrY 540671 540971 -50972613 + AluSg SINE Alu 1 300 -10 7615 192 32 53 chrY 540971 541288 -50972296 + MSTB-int LTR MaLR 1323 1645 -6 1637 198 119 22 chrY 541294 541663 -50971921 + MSTB LTR MaLR 1 405 -21 2684 105 6 0 chrY 543023 543385 -50970199 + THE1B LTR MaLR 1 364 0 441 0 0 0 chrY 543477 543526 -50970058 + (TAGA)n Simple_repeat Simple_repeat 2 50 0 717 12 0 0 chrY 543783 543865 -50969719 + (TTCTC)n Simple_repeat Simple_repeat 3 84 0 1250 144 0 20 chrY 543865 544060 -50969524 - AluSg/x SINE Alu -31 279 89 584 194 194 51 chrY 544061 544257 -50969327 - MER95 LTR ERV -199 232 9 341 279 99 71 chrY 544259 544653 -50968931 - L1M4 LINE L1 -1120 5026 4622 44 20 0 0 chrY 545063 545114 -50968470 + AT_rich Low_complexity Low_complexity 1 51 0 4408 189 33 6 chrY 545115 546126 -50967458 + L1 LINE L1 4335 5372 -774 3850 197 25 93 chrY 546126 547317 -50966267 + MER39B-int LTR ERV1 5074 6183 -148 3149 175 14 36 chrY 547386 548025 -50965559 + MER39B LTR ERV1 29 653 0 2650 219 96 14 chrY 548025 548825 -50964759 - L1MB7 LINE L1 -63 6121 5256 402 244 13 97 chrY 548831 549069 -50964515 - L1MB7 LINE L1 -1459 4687 4470 959 145 30 30 chrY 549167 549367 -50964217 - L1MA7 LINE L1 -3 6288 6089 187 91 23 23 chrY 549711 549755 -50963829 + (GAAAA)n Simple_repeat Simple_repeat 2 45 0 925 254 52 0 chrY 550014 550305 -50963279 + L1M4 LINE L1 2639 2944 -3202 * 2772 124 26 0 chrY 550295 550827 -50962757 - L1PA14 LINE L1 -481 5680 5139 3258 102 10 10 chrY 550827 551310 -50962274 + L1PA14 LINE L1 5671 6159 -2 4686 250 16 63 chrY 551311 551409 -50962175 + L1M4 LINE L1 2928 3029 -3117 814 211 8 86 chrY 551409 551665 -50961919 - MER46A DNA MER2_type 0 236 1 4686 250 16 63 chrY 551665 552126 -50961458 + L1M4 LINE L1 3029 3510 -2636 1917 133 74 17 chrY 552126 552478 -50961106 - THE1C LTR MaLR 0 375 4 4686 250 16 63 chrY 552478 553753 -50959831 + L1M4 LINE L1 3510 4677 -1469 23 54 0 0 chrY 554733 554770 -50958814 + AT_rich Low_complexity Low_complexity 1 37 0 9526 69 1 0 chrY 554773 556022 -50957562 - L1P LINE L1 -3679 2467 1218 7151 54 1 0 chrY 556022 557611 -50955973 + L1PA5 LINE L1 4566 6154 0 604 259 92 6 chrY 558316 558490 -50955094 + MIR SINE MIR 72 260 -2 27 29 0 0 chrY 558667 558701 -50954883 + AT_rich Low_complexity Low_complexity 1 34 0 387 0 0 0 chrY 558998 559041 -50954543 + (TG)n Simple_repeat Simple_repeat 1 43 0 225 230 90 70 chrY 559193 559293 -50954291 + MLT1I LTR MaLR 308 409 0 199 188 0 50 chrY 560634 560714 -50952870 + GA-rich Low_complexity Low_complexity 2 77 0 1181 74 0 0 chrY 560743 560892 -50952692 - AluY SINE Alu -9 302 154 28 71 0 0 chrY 561627 561683 -50951901 + AT_rich Low_complexity Low_complexity 1 56 0 492 308 85 28 chrY 562527 562774 -50950810 - MIR SINE MIR -1 261 1 13760 181 43 18 chrY 562855 564556 -50949028 - L1PB1 LINE L1 0 6867 5210 536 0 0 15 chrY 564556 564621 -50948963 + (TTTTA)n Simple_repeat Simple_repeat 4 67 0 13760 181 43 18 chrY 564621 566405 -50947179 - L1PB1 LINE L1 -1657 5210 3472 1650 113 4 4 chrY 566405 566636 -50946948 - AluSx SINE Alu -81 231 1 13760 181 43 18 chrY 566636 569682 -50943902 - L1PB1 LINE L1 -3395 3472 1 1699 181 0 7 chrY 571010 571297 -50942287 + AluJb SINE Alu 1 285 -27 23 0 0 0 chrY 571297 571320 -50942264 + AT_rich Low_complexity Low_complexity 1 23 0 2750 281 81 48 chrY 572230 573814 -50939770 + HAL1 LINE L1 1 1637 -870 22 0 0 0 chrY 577454 577476 -50936108 + AT_rich Low_complexity Low_complexity 1 22 0 6991 175 75 37 chrY 577483 578874 -50934710 + L1PA16 LINE L1 16 1458 -6107 6708 47 1 6 chrY 578875 579708 -50933876 - L1PA5 LINE L1 0 6154 5326 4556 60 0 5 chrY 579704 580307 -50933277 + L1PA5 LINE L1 4718 5317 -829 * 6587 150 25 8 chrY 580303 582709 -50930875 + L1PA16 LINE L1 1444 3927 -3638 1972 156 72 29 chrY 582713 583247 -50930337 + MLT2A2 LTR ERVL 1 554 0 5600 187 19 141 chrY 583250 584771 -50928813 + L1PA16 LINE L1 3930 5149 -2416 228 86 0 0 chrY 584771 584806 -50928778 + (TAAAA)n Simple_repeat Simple_repeat 1 35 0 5600 187 19 141 chrY 584806 585285 -50928299 + L1PA16 LINE L1 5149 5685 -1880 928 152 0 0 chrY 585282 585440 -50928144 + L1 LINE L1 3650 3807 -2339 * 4902 178 38 46 chrY 585466 586689 -50926895 + L1PA16 LINE L1 5704 6893 -692 2333 74 3 6 chrY 586689 587000 -50926584 - AluY SINE Alu -1 310 1 4902 178 38 46 chrY 587000 587680 -50925904 + L1PA16 LINE L1 6893 7577 -8 982 237 60 82 chrY 587693 588388 -50925196 + L1M4 LINE L1 2977 3656 -3909 * 2005 169 52 54 chrY 588385 588726 -50924858 + L1MA7 LINE L1 5765 6106 -185 1709 154 82 113 chrY 588726 589167 -50924417 + MSTA LTR MaLR 2 428 0 2005 169 52 54 chrY 589167 589341 -50924243 + L1MA7 LINE L1 6106 6279 -12 783 295 61 40 chrY 589382 589673 -50923911 + HAL1 LINE L1 2020 2326 -181 1866 197 45 33 chrY 589673 590094 -50923490 + MSTB LTR MaLR 1 426 0 783 295 61 40 chrY 590094 590280 -50923304 + HAL1 LINE L1 2326 2507 0 2277 159 16 60 chrY 591347 591794 -50921790 + MSTB1 LTR MaLR 1 427 -5 22 35 0 0 chrY 592498 592527 -50921057 + AT_rich Low_complexity Low_complexity 1 29 0 237 316 20 20 chrY 592896 592994 -50920590 + MER5B DNA MER1_type 1 98 -80 8452 216 81 30 chrY 593552 593901 -50919683 - L1MC2 LINE L1 -11 7747 7417 2315 85 0 10 chrY 593901 594206 -50919378 + AluSc SINE Alu 1 302 -7 8452 216 81 30 chrY 594206 596118 -50917466 - L1MC2 LINE L1 -341 7417 5403 5200 208 52 14 chrY 596221 598054 -50915530 - L1MC1 LINE L1 0 6613 4711 2516 119 6 3 chrY 598054 598415 -50915169 + THE1B LTR MaLR 1 362 -2 5200 208 52 14 chrY 598415 598528 -50915056 - L1MC1 LINE L1 -1902 4711 4604 644 302 37 0 chrY 598597 598786 -50914798 - MLT2B1 LTR ERVL -322 198 3 2232 112 0 0 chrY 598787 599082 -50914502 + AluSg SINE Alu 1 295 -15 2714 96 5 8 chrY 599098 599474 -50914110 + THE1C LTR MaLR 1 375 0 351 293 50 0 chrY 599475 599615 -50913969 + L1M4 LINE L1 4840 4986 -2579 1036 255 7 29 chrY 599628 599906 -50913678 + AluJo SINE Alu 11 282 -30 2528 238 33 6 chrY 599934 600594 -50912990 + L1M4 LINE L1 4980 5657 -1908 264 191 16 32 chrY 600656 600719 -50912865 + MLT2B1 LTR ERVL 298 359 -161 3207 216 76 26 chrY 600727 602732 -50910852 - L1MC1 LINE L1 -2751 3675 1479 871 150 50 0 chrY 602747 602907 -50910677 - L1MA3 LINE L1 -8 6297 6130 11397 183 30 9 chrY 602948 606367 -50907217 - L1MA3 LINE L1 -102 7265 3772 7904 210 24 125 chrY 606363 608906 -50904678 - L1MA3 LINE L1 -4564 2645 1 * 1676 250 71 63 chrY 610150 611054 -50902530 - L1M4 LINE L1 -1171 4975 4065 1246 281 79 41 chrY 611273 611443 -50902141 - L1M4c LINE L1 -4539 2418 2256 186 103 0 0 chrY 611443 611472 -50902112 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 1246 281 79 41 chrY 611472 612258 -50901326 - L1M4c LINE L1 -4701 2256 1356 286 232 61 0 chrY 612269 612351 -50901233 + L1M4b LINE L1 1330 1416 -5443 290 302 0 0 chrY 612370 612466 -50901118 - L1M4c LINE L1 -5555 1304 1209 285 146 0 0 chrY 612589 612637 -50900947 + (TG)n Simple_repeat Simple_repeat 1 48 0 896 333 38 10 chrY 612994 613387 -50900197 - L1M4c LINE L1 -5922 937 534 655 133 0 0 chrY 613658 613763 -50899821 - L1PA8A LINE L1 -29 6102 5998 23 0 0 0 chrY 614175 614198 -50899386 + AT_rich Low_complexity Low_complexity 1 23 0 2002 132 3 3 chrY 615175 615463 -50898121 - AluSx SINE Alu -22 290 3 30656 110 13 66 chrY 615567 622070 -50891514 + L1PA7 LINE L1 12 6153 -1 230 286 0 65 chrY 622762 622839 -50890745 + MER5B DNA MER1_type 4 75 -103 233 0 0 59 chrY 622982 623016 -50890568 + (TTTTTG)n Simple_repeat Simple_repeat 1 32 0 247 366 0 20 chrY 623106 623207 -50890377 + MLT1K LTR MaLR 166 264 -324 392 339 0 0 chrY 623346 623473 -50890111 + MLT1K LTR MaLR 354 480 -108 333 234 102 55 chrY 624993 625249 -50888335 - L1MC5 LINE L1 -158 7803 7536 1524 246 20 9 chrY 625876 626221 -50887363 + MLT1A1 LTR MaLR 14 362 -3 374 343 116 5 chrY 627458 627656 -50885928 - MIR SINE MIR -6 256 37 23 0 0 0 chrY 628665 628688 -50884896 + AT_rich Low_complexity Low_complexity 1 23 0 281 259 0 24 chrY 628856 628941 -50884643 + L2 LINE L2 2152 2234 -1080 199 365 47 0 chrY 629183 629268 -50884316 + L2 LINE L2 2723 2811 -503 24 32 0 0 chrY 629496 629527 -50884057 + AT_rich Low_complexity Low_complexity 1 31 0 280 277 32 43 chrY 629539 629633 -50883951 - MLT1H1 LTR MaLR -82 473 381 10770 219 51 41 chrY 629725 630875 -50882709 - L1PA16 LINE L1 -1 7603 6466 1479 188 61 4 chrY 630875 631152 -50882432 + AluJb SINE Alu 2 294 -18 10770 219 51 41 chrY 631152 632245 -50881339 - L1PA16 LINE L1 -1138 6466 5385 1247 77 0 0 chrY 632245 632401 -50881183 + AluSg SINE Alu 1 156 -154 10770 219 51 41 chrY 632401 635346 -50878238 - L1PA16 LINE L1 -2219 5385 2199 348 283 0 10 chrY 635598 635697 -50877887 - L1PA16 LINE L1 -5399 2182 2085 873 345 36 46 chrY 635812 636420 -50877164 - L1PA16 LINE L1 -6185 1389 788 13729 155 26 11 chrY 636432 636632 -50876952 - Tigger1 DNA MER2_type 0 2418 2223 1600 189 14 7 chrY 636632 636918 -50876666 + AluJo SINE Alu 1 288 -24 219 36 0 0 chrY 636922 636950 -50876634 + (CAA)n Simple_repeat Simple_repeat 2 29 0 13729 155 26 11 chrY 636950 639119 -50874465 - Tigger1 DNA MER2_type -197 2221 8 211 279 36 117 chrY 639592 639703 -50873881 - MIR SINE MIR -98 164 63 222 118 0 0 chrY 641050 641084 -50872500 + (TTTA)n Simple_repeat Simple_repeat 3 36 0 1801 171 10 7 chrY 641195 641505 -50872079 + AluJb SINE Alu 1 311 -1 459 309 23 11 chrY 641617 641792 -50871792 + CT-rich Low_complexity Low_complexity 3 179 0 279 0 0 0 chrY 641861 641892 -50871692 + (TG)n Simple_repeat Simple_repeat 2 32 0 391 108 0 0 chrY 642078 642143 -50871441 + L1PA13 LINE L1 6096 6160 -3 543 250 119 6 chrY 642364 642524 -50871060 - MIR SINE MIR -49 213 36 21 0 0 0 chrY 643254 643275 -50870309 + AT_rich Low_complexity Low_complexity 1 21 0 237 339 18 46 chrY 643284 643393 -50870191 - MER5A DNA MER1_type -72 117 12 748 277 68 4 chrY 643665 643900 -50869684 + MIR SINE MIR 12 261 -1 216 111 0 0 chrY 643914 643950 -50869634 + (CAT)n Simple_repeat Simple_repeat 1 36 0 36 70 0 0 chrY 644083 644154 -50869430 + AT_rich Low_complexity Low_complexity 1 71 0 2309 68 0 10 chrY 644296 644592 -50868992 + AluY SINE Alu 2 294 -17 696 324 44 35 chrY 644694 645237 -50868347 - L1ME3 LINE L1 -280 5882 5335 1454 180 3 42 chrY 645404 645693 -50867891 - AluJo SINE Alu -21 291 14 3234 147 7 47 chrY 646125 646718 -50866866 + LTR24B LTR ERV1 1 569 -7 1246 237 76 57 chrY 646718 647312 -50866272 + LTR24B-int LTR ERV1 1 745 -4378 350 213 13 13 chrY 648056 648131 -50865453 + LTR24B-int LTR ERV1 1121 1195 -5136 312 274 14 0 chrY 648142 648215 -50865369 + tRNA-Glu-GAG tRNA tRNA 2 75 0 406 216 0 20 chrY 648215 648317 -50865267 + LTR24B-int LTR ERV1 1283 1382 -4949 848 191 39 22 chrY 648441 648619 -50864965 + LTR24B-int LTR ERV1 1372 1552 -4779 360 227 34 59 chrY 648727 648846 -50864738 + LTR24B-int LTR ERV1 873 988 -4135 369 250 0 0 chrY 648846 648922 -50864662 + MER34C LTR ERV1 155 230 -355 4432 192 77 80 chrY 648938 649878 -50863706 + LTR24B-int LTR ERV1 1093 2034 -4208 1365 237 0 33 chrY 649878 650182 -50863402 + AluJo SINE Alu 1 294 -8 4432 192 77 80 chrY 650182 651694 -50861890 + LTR24B-int LTR ERV1 2034 4848 -1394 2516 197 40 19 chrY 651694 652669 -50860915 + LTR24B-int LTR ERV1 4425 4999 -124 2282 97 3 0 chrY 652681 652981 -50860603 - AluSp SINE Alu -11 302 2 5930 109 32 12 chrY 652986 654647 -50858937 - L1PA13 LINE L1 0 6163 4489 511 182 16 8 chrY 654648 654769 -50858815 + L1PA13 LINE L1 4362 4483 -1663 2667 164 51 9 chrY 654859 655408 -50858176 + LTR24B LTR ERV1 1 572 -4 259 259 79 65 chrY 655957 656247 -50857337 + HAL1 LINE L1 947 1240 -1267 297 109 0 22 chrY 656268 656314 -50857270 + MER11B LTR ERVK 1191 1235 -1 2931 80 18 0 chrY 656314 656715 -50856869 + L1PA8 LINE L1 5762 6169 -3 588 112 5 4 chrY 656725 656843 -50856741 - L1MC/D LINE L1 -406 5760 5664 1886 137 7 17 chrY 656956 657256 -50856328 + AluSx SINE Alu 3 299 -13 442 342 46 29 chrY 657292 657532 -50856052 + L2 LINE L2 1717 1960 -1354 737 160 0 40 chrY 658692 658849 -50854735 - AluJb SINE Alu 0 316 165 2523 199 19 29 chrY 659035 659657 -50853927 - L1MC1 LINE L1 0 6613 5998 727 155 69 6 chrY 659675 659849 -50853735 - L1MA9 LINE L1 0 6312 6128 5365 192 31 2 chrY 659849 660979 -50852605 - L1 LINE L1 -1793 5313 4151 2121 256 72 33 chrY 660982 661709 -50851875 - L1 LINE L1 -6243 787 2 6171 230 27 84 chrY 661728 661792 -50851792 - L1MC1 LINE L1 -603 6010 5944 315 0 0 0 chrY 661792 661827 -50851757 + (TG)n Simple_repeat Simple_repeat 2 36 0 6171 230 27 84 chrY 661827 663192 -50850392 - L1MC1 LINE L1 -669 5944 4502 1622 190 80 86 chrY 663192 663782 -50849802 + LTR60 LTR ERV1 1 586 0 6171 230 27 84 chrY 663782 665488 -50848096 - L1MC1 LINE L1 -2111 4502 2699 2358 93 0 10 chrY 665488 665801 -50847783 - AluSg SINE Alu 0 310 1 6171 230 27 84 chrY 665801 665896 -50847688 - L1MC1 LINE L1 -3914 2699 2992 1638 174 31 10 chrY 665896 666184 -50847400 + AluJb SINE Alu 18 311 -1 6171 230 27 84 chrY 666184 666428 -50847156 - L1MC1 LINE L1 -3620 2993 2737 4976 224 36 30 chrY 666434 667699 -50845885 - L1MC1 LINE L1 -5108 1318 46 2025 107 3 7 chrY 668464 668762 -50844822 - AluSx SINE Alu -15 297 1 21 0 0 0 chrY 669383 669404 -50844180 + AT_rich Low_complexity Low_complexity 1 21 0 662 287 101 13 chrY 669614 669851 -50843733 - MIR SINE MIR 0 262 5 22 0 0 0 chrY 670498 670520 -50843064 + AT_rich Low_complexity Low_complexity 1 22 0 328 89 0 0 chrY 670932 670977 -50842607 - Alu SINE Alu -258 45 1 2106 70 0 22 chrY 671110 671383 -50842201 + AluY SINE Alu 37 303 -8 254 310 0 10 chrY 671384 671484 -50842100 - L1MCb LINE L1 -1973 4453 4355 25 0 0 0 chrY 671569 671594 -50841990 + AT_rich Low_complexity Low_complexity 1 25 0 616 292 88 86 chrY 671699 672010 -50841574 - L1M4 LINE L1 -2370 3776 3467 1369 218 14 0 chrY 672010 672290 -50841294 - AluJb SINE Alu -28 284 1 616 292 88 86 chrY 672290 672975 -50840609 - L1M4 LINE L1 -2679 3467 2778 418 330 52 73 chrY 673021 673406 -50840178 - L1MEd LINE L1 -5643 476 100 250 232 91 40 chrY 674084 674183 -50839401 - MLT1I LTR MaLR -2 407 304 2481 211 39 7 chrY 674757 675327 -50838257 + L1MB3 LINE L1 5586 6173 -10 10289 188 34 4 chrY 675371 677055 -50836529 - L1PB1 LINE L1 -1 6866 5233 234 0 0 0 chrY 677055 677081 -50836503 + (TTTTA)n Simple_repeat Simple_repeat 2 27 0 10289 188 34 4 chrY 677081 678675 -50834909 - L1PB1 LINE L1 -1634 5233 3500 251 229 41 8 chrY 678686 678808 -50834776 + (TA)n Simple_repeat Simple_repeat 2 127 0 6038 116 39 6 chrY 678808 679797 -50833787 - L1PB1 LINE L1 -4458 2405 1384 461 177 50 116 chrY 679797 679978 -50833606 - MER4B-int LTR ERV1 -3751 2195 2027 198 103 0 0 chrY 680021 680050 -50833534 + (CA)n Simple_repeat Simple_repeat 2 30 0 3285 194 12 5 chrY 680083 680860 -50832724 - MER4B-int LTR ERV1 -5698 1060 225 1660 135 51 11 chrY 680883 680960 -50832624 - MER4B-int LTR ERV1 -6473 285 213 182 31 0 62 chrY 680960 680992 -50832592 + (TAAA)n Simple_repeat Simple_repeat 3 32 0 1660 135 51 11 chrY 680992 681188 -50832396 - MER4B-int LTR ERV1 -6545 213 1 3258 152 6 11 chrY 681188 681802 -50831782 - MER4B LTR ERV1 0 779 3 838 250 44 0 chrY 681804 682032 -50831552 - L1MCb LINE L1 -2311 4115 3878 * 1431 209 55 13 chrY 682030 682733 -50830851 - L1MCb LINE L1 -3953 2473 1702 1758 150 3 46 chrY 682737 683098 -50830486 - MER4A LTR ERV1 0 664 261 236 111 22 22 chrY 683098 683143 -50830441 - MER4A LTR ERV1 -566 98 54 2026 220 49 52 chrY 683174 683250 -50830334 - L1MCb LINE L1 -4821 1605 1530 2510 69 0 0 chrY 683250 683555 -50830029 - AluY SINE Alu -6 305 1 2026 220 49 52 chrY 683555 684499 -50829085 - L1MCb LINE L1 -4896 1530 609 408 225 40 2 chrY 684537 684650 -50828934 - LTR9B LTR ERV1 0 644 557 255 283 0 0 chrY 684774 684834 -50828750 + LTR4 LTR ERV1 298 357 -239 1225 170 7 92 chrY 684920 685226 -50828358 + LTR4 LTR ERV1 317 596 0 2072 242 59 8 chrY 685226 685751 -50827833 - LTR9B LTR ERV1 -86 558 7 1437 167 7 11 chrY 685757 686022 -50827562 - HUERS-P3 LTR ERV1 0 8919 6828 811 154 18 6 chrY 686347 686516 -50827068 - HUERS-P3 LTR ERV1 -2453 2562 2392 515 200 16 24 chrY 686517 686642 -50826942 - HUERS-P3 LTR ERV1 -1934 6985 6862 3441 204 13 5 chrY 686653 687287 -50826297 - HUERS-P3 LTR ERV1 -2007 6912 6274 1418 173 68 0 chrY 687279 687528 -50826056 - HUERS-P3 LTR ERV1 -3753 5166 4901 * 736 167 91 0 chrY 687529 687661 -50825923 - HUERS-P3 LTR ERV1 -4237 4682 4539 * 9203 163 14 2 chrY 687654 689130 -50824454 - HUERS-P3 LTR ERV1 -5635 3284 1791 4948 173 30 12 chrY 689127 690012 -50823572 - HUERS-P3 LTR ERV1 -7267 1652 752 * 2825 205 34 19 chrY 690057 690682 -50822902 - HUERS-P3 LTR ERV1 -8285 634 1 2740 208 59 8 chrY 690682 691289 -50822295 - LTR9B LTR ERV1 0 644 7 2657 222 11 81 chrY 691291 691759 -50821825 - L1MCa LINE L1 -5342 754 389 2039 61 0 0 chrY 691759 692063 -50821521 + AluY SINE Alu 34 337 0 2657 222 11 81 chrY 692063 692401 -50821183 - L1MCa LINE L1 -5707 389 29 23 0 0 0 chrY 692405 692428 -50821156 + AT_rich Low_complexity Low_complexity 1 23 0 314 204 97 11 chrY 692531 692624 -50820960 - L1MD1 LINE L1 -39 6203 6103 530 275 26 0 chrY 692642 692835 -50820749 - L1MDa LINE L1 -2934 3472 3275 476 301 25 0 chrY 692834 692997 -50820587 - L1MDa LINE L1 -4168 2238 2072 * 1555 260 57 67 chrY 693010 693798 -50819786 - L1MDa LINE L1 -4390 2016 1237 259 29 0 0 chrY 693831 693866 -50819718 - L1MA7 LINE L1 -21 6270 6236 1172 156 23 8 chrY 693869 694169 -50819415 + L1M2 LINE L1 5180 5482 -743 2281 257 67 123 chrY 694227 695400 -50818184 - L1MDa LINE L1 -5274 1135 28 3085 199 79 47 chrY 695405 695894 -50817690 - L1MC3 LINE L1 -16 7769 7238 3244 175 30 57 chrY 695894 696701 -50816883 + LTR1 LTR ERV1 1 785 0 3085 199 79 47 chrY 696701 697088 -50816496 - L1MC3 LINE L1 -547 7238 6865 3256 262 58 7 chrY 697106 697484 -50816100 - L1M4 LINE L1 -1164 4982 4625 1889 141 133 16 chrY 697484 697867 -50815717 + MSTA LTR MaLR 1 428 0 3256 262 58 7 chrY 697867 698586 -50814998 - L1M4 LINE L1 -1521 4625 3829 1494 211 5 83 chrY 698632 699053 -50814531 + MLT1B LTR MaLR 1 388 -2 545 224 86 82 chrY 699054 699358 -50814226 - L1MCa LINE L1 -5026 1400 1096 1181 217 102 110 chrY 699654 700064 -50813520 + MSTD-int LTR MaLR 1237 1643 -92 2547 273 57 62 chrY 700065 701880 -50811704 + L1MB7 LINE L1 2564 4368 -1778 2303 225 73 2 chrY 701895 702708 -50810876 + L1MB7 LINE L1 4951 5827 -357 32 75 0 0 chrY 703059 703126 -50810458 + AT_rich Low_complexity Low_complexity 1 67 0 27 73 0 0 chrY 703207 703262 -50810322 + AT_rich Low_complexity Low_complexity 1 55 0 184 280 96 88 chrY 703711 703836 -50809748 - MIR SINE MIR -19 243 118 2171 209 35 7 chrY 703848 704279 -50809305 + Tigger5 DNA MER2_type 10 452 -1871 395 190 25 0 chrY 704290 704369 -50809215 + Tigger5 DNA MER2_type 2243 2323 0 22 35 0 0 chrY 704469 704498 -50809086 + AT_rich Low_complexity Low_complexity 1 29 0 881 227 100 0 chrY 704969 705260 -50808324 + MER33 DNA MER1_type 1 320 -4 7086 235 13 10 chrY 706226 707741 -50805843 + ERVL LTR ERVL 417 1936 -3828 799 224 87 42 chrY 707743 708073 -50805511 + MSTD LTR MaLR 1 394 -2 629 73 0 109 chrY 708113 708223 -50805361 + L1MA3 LINE L1 6198 6295 -10 360 336 0 0 chrY 708237 708359 -50805225 + MSTD-int LTR MaLR 44 165 -1570 1943 137 77 14 chrY 708359 708710 -50804874 - THE1C LTR MaLR 0 375 3 399 133 0 13 chrY 708712 708787 -50804797 - THE1C-int LTR MaLR 0 1580 1507 1360 262 100 17 chrY 708794 709214 -50804370 + MLT2B1 LTR ERVL 1 455 -65 225 0 0 0 chrY 709214 709239 -50804345 + (TC)n Simple_repeat Simple_repeat 1 25 0 13908 181 22 9 chrY 709243 713326 -50800258 + L1MA1 LINE L1 2158 6296 -6 457 261 121 48 chrY 713332 713584 -50800000 + L1MC4 LINE L1 6369 6650 -1392 279 0 0 0 chrY 713584 713615 -50799969 + (CA)n Simple_repeat Simple_repeat 2 32 0 457 261 121 48 chrY 713615 713676 -50799908 + L1MC4 LINE L1 6650 6705 -1337 258 32 0 0 chrY 713839 713870 -50799714 + (TCTCC)n Simple_repeat Simple_repeat 5 35 0 465 272 44 0 chrY 713891 714027 -50799557 - MLT1E2 LTR MaLR -319 307 166 466 159 0 0 chrY 714038 714107 -50799477 + AluS SINE Alu 221 289 -23 354 297 34 46 chrY 714143 714318 -50799266 + L1ME LINE L1 5618 5790 -331 1088 300 47 16 chrY 714329 714823 -50798761 - L1MCb LINE L1 -5104 941 433 983 278 35 56 chrY 714811 715230 -50798354 - L1M4 LINE L1 -1931 4215 3789 * 2266 82 0 0 chrY 715230 715558 -50798026 - AluY SINE Alu 0 328 1 983 278 35 56 chrY 715558 715697 -50797887 - L1M4 LINE L1 -2357 3789 3668 245 29 29 0 chrY 715697 715731 -50797853 + (TCTA)n Simple_repeat Simple_repeat 2 36 0 983 278 35 56 chrY 715731 715792 -50797792 - L1M4 LINE L1 -2478 3668 3607 2657 159 2 47 chrY 715794 716302 -50797282 - L1PA15 LINE L1 0 6165 5681 21 0 0 0 chrY 716306 716327 -50797257 + AT_rich Low_complexity Low_complexity 1 21 0 442 238 66 13 chrY 716556 716707 -50796877 - L1M4 LINE L1 -2915 3231 3073 2771 175 45 15 chrY 716723 717259 -50796325 + MER7C DNA MER2_type 2 553 -49 * 2813 190 87 0 chrY 717256 717788 -50795796 - Tigger4(Zombi) DNA MER2_type -2153 578 1 3434 193 52 75 chrY 717791 718526 -50795058 + L1MA6 LINE L1 5042 5774 -526 253 122 20 0 chrY 718526 718575 -50795009 + LTR66 LTR ERVL 389 438 -172 3434 193 52 75 chrY 718575 719090 -50794494 + L1MA6 LINE L1 5774 6299 -1 1941 149 44 16 chrY 719998 720361 -50793223 - THE1C LTR MaLR 0 375 3 9686 136 11 37 chrY 720367 721977 -50791607 - THE1C-int LTR MaLR -4 1576 8 1707 150 62 38 chrY 721977 722316 -50791268 - THE1C LTR MaLR -28 347 1 42448 32 24 2 chrY 723917 729932 -50783652 + L1HS LINE L1 2 6155 0 198 91 0 0 chrY 729934 729967 -50783617 + (A)n Simple_repeat Simple_repeat 1 33 0 246 32 0 0 chrY 730828 730859 -50782725 + (TAAAA)n Simple_repeat Simple_repeat 3 33 0 31 76 0 0 chrY 730964 731030 -50782554 + AT_rich Low_complexity Low_complexity 1 66 0 496 286 181 21 chrY 731165 731452 -50782132 + LTR16C LTR ERVL 157 489 -2 22 70 0 0 chrY 731929 731972 -50781612 + AT_rich Low_complexity Low_complexity 1 43 0 1501 237 67 5 chrY 732149 732520 -50781064 + MSTD LTR MaLR 3 396 0 4778 257 55 48 chrY 732523 733188 -50780396 + MSTD-int LTR MaLR 3 662 -1073 2364 72 0 0 chrY 733188 733509 -50780075 + AluY SINE Alu 1 321 0 4778 257 55 48 chrY 733509 734560 -50779024 + MSTD-int LTR MaLR 662 1735 0 1067 268 78 10 chrY 734560 734866 -50778718 + MSTD LTR MaLR 1 327 -69 219 209 30 0 chrY 734920 734987 -50778597 + (TA)n Simple_repeat Simple_repeat 1 69 0 23 54 0 0 chrY 735052 735089 -50778495 + AT_rich Low_complexity Low_complexity 1 37 0 183 80 0 0 chrY 735090 735115 -50778469 + (TC)n Simple_repeat Simple_repeat 1 25 0 1934 212 100 25 chrY 736667 737148 -50776436 - MLT2B1 LTR ERVL -1 519 3 7698 180 46 11 chrY 737149 738599 -50774985 - ERVL-B1 LTR ERVL -6 5758 4258 7420 218 14 23 chrY 738601 740150 -50773434 - ERVL-B1 LTR ERVL -3846 1918 385 585 173 23 20 chrY 740150 740466 -50773118 + (TA)n Simple_repeat Simple_repeat 1 317 0 1034 293 10 7 chrY 740492 740799 -50772785 - ERVL-B1 LTR ERVL -5346 308 1 1755 222 50 48 chrY 740799 741318 -50772266 - MLT2B1 LTR ERVL 0 520 1 43 64 0 0 chrY 741407 741485 -50772099 + AT_rich Low_complexity Low_complexity 1 78 0 377 302 21 57 chrY 741485 741677 -50771907 - MIR SINE MIR -6 256 72 5042 139 31 3 chrY 742580 743650 -50769934 - L1PA16 LINE L1 0 6166 5107 27 0 0 0 chrY 743778 743805 -50769779 + AT_rich Low_complexity Low_complexity 1 27 0 21 0 0 0 chrY 744034 744055 -50769529 + AT_rich Low_complexity Low_complexity 1 21 0 792 154 0 29 chrY 744433 744569 -50769015 + FLAM_C SINE Alu 2 133 0 27 49 0 0 chrY 744569 744610 -50768974 + AT_rich Low_complexity Low_complexity 1 41 0 257 127 109 0 chrY 744634 744689 -50768895 - L1MA3 LINE L1 -1 6304 6244 248 212 0 15 chrY 745301 745367 -50768217 - L1MD2 LINE L1 -3 6356 6292 * 2815 100 0 2 chrY 745365 745766 -50767818 - L1PA7 LINE L1 -1227 4919 4520 6570 65 5 40 chrY 745766 747036 -50766548 + L1PA7 LINE L1 4911 6146 -8 450 211 42 0 chrY 747036 747131 -50766453 - L1MD1 LINE L1 -59 6183 6085 1051 254 99 9 chrY 747137 747608 -50765976 - L1MD1 LINE L1 -396 5963 5442 973 241 64 19 chrY 747609 747933 -50765651 - MSTD LTR MaLR -35 361 1 505 258 37 53 chrY 748177 748367 -50765217 - L2 LINE L2 -16 3297 3111 257 278 0 0 chrY 748462 748534 -50765050 - L2 LINE L2 -1015 2299 2228 306 333 95 26 chrY 749598 749829 -50763755 - MLT1J2 LTR MaLR -145 305 59 2090 163 22 3 chrY 751664 752019 -50761565 + MER57A LTR ERV1 1 362 -41 8524 144 29 41 chrY 752019 753467 -50760117 + MER57A-int LTR ERV1 14 1444 -6093 3463 124 4 0 chrY 753464 753954 -50759630 + MER57A-int LTR ERV1 6655 7146 -391 * 660 107 90 33 chrY 753954 754076 -50759508 + LTR54B LTR ERV1 3 131 -367 1540 113 43 31 chrY 754076 754171 -50759413 + MER57A-int LTR ERV1 7279 7371 -166 186 43 0 0 chrY 754171 754194 -50759390 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 1540 113 43 31 chrY 754194 754354 -50759230 + MER57A-int LTR ERV1 7371 7537 0 2238 156 10 29 chrY 754354 754765 -50758819 + MER57A LTR ERV1 1 403 0 301 230 61 47 chrY 755726 755874 -50757710 + L1MC4 LINE L1 7892 8041 -1 6960 209 33 16 chrY 755907 758377 -50755207 - L1PA16 LINE L1 -144 6022 3486 22 0 0 0 chrY 758532 758554 -50755030 + AT_rich Low_complexity Low_complexity 1 22 0 20972 163 23 6 chrY 758652 761279 -50752305 + L1MA3 LINE L1 22 2728 -4837 2284 94 10 0 chrY 761279 761577 -50752007 + AluSc SINE Alu 1 301 -8 20972 163 23 6 chrY 761577 762587 -50750997 + L1MA3 LINE L1 2728 3720 -3845 272 239 0 28 chrY 762587 762658 -50750926 + L1P LINE L1 4890 4958 -1188 1316 122 0 0 chrY 762674 762855 -50750729 + AluJb SINE Alu 117 297 -15 9634 189 24 8 chrY 762871 763376 -50750208 + L1MA3 LINE L1 4624 5119 -2605 2861 104 0 5 chrY 763376 763790 -50749794 - L1PA13 LINE L1 -4 6159 5748 9634 189 24 8 chrY 763790 764026 -50749558 + L1MA3 LINE L1 5119 5350 -2374 6087 97 7 20 chrY 764026 764966 -50748618 + L1PA13 LINE L1 5231 6158 -5 9634 189 24 8 chrY 764966 767272 -50746312 + L1MA3 LINE L1 5350 7723 -1 227 333 14 0 chrY 767740 767809 -50745775 + MIR3 SINE MIR 124 193 -15 855 259 23 5 chrY 767823 768039 -50745545 - MER58A DNA MER1_type -4 220 1 1985 236 45 2 chrY 768498 769153 -50744431 - L1MB7 LINE L1 -301 5883 5197 2096 221 25 51 chrY 769172 769683 -50743901 - LTR53 LTR ERVL -21 498 1 4110 239 35 11 chrY 769907 770495 -50743089 - HERVL74 LTR ERVL -2335 3350 2728 2254 169 88 39 chrY 770495 770855 -50742729 + LTR49 LTR ERV1 1 401 -194 1857 162 0 17 chrY 770855 771152 -50742432 - AluJo SINE Alu -12 300 9 2254 169 88 39 chrY 771152 771358 -50742226 + LTR49 LTR ERV1 401 595 0 4110 239 35 11 chrY 771358 771754 -50741830 - HERVL74 LTR ERVL -2957 2728 2343 4091 118 14 62 chrY 771757 772483 -50741101 - LTR8 LTR ERV1 0 691 1 801 201 6 17 chrY 772495 772669 -50740915 - HERVL74 LTR ERVL -3423 2262 2091 2188 192 16 91 chrY 772784 773349 -50740235 - HERVL74 LTR ERVL -1483 2102 1623 1808 250 56 109 chrY 773374 774137 -50739447 - MER21B LTR ERV1 -124 739 17 549 211 14 19 chrY 774156 774370 -50739214 - HERVL74 LTR ERVL -4061 1624 1313 3804 172 33 7 chrY 774370 775063 -50738521 + MER50 LTR ERV1 1 711 -23 689 212 34 7 chrY 775144 775290 -50738294 - HERVL74 LTR ERVL -4368 1317 1168 2485 226 26 33 chrY 775290 775506 -50738078 + L1M3 LINE L1 4896 5112 -1071 1680 133 50 36 chrY 775506 775784 -50737800 - AluSx SINE Alu -27 285 4 2485 226 26 33 chrY 775784 776476 -50737108 + L1M3 LINE L1 5112 5787 -396 236 255 0 0 chrY 776695 776746 -50736838 - MER107 DNA MER1_type -46 151 101 1844 273 30 2 chrY 777714 778219 -50735365 - LTR53 LTR ERVL 0 519 1 2266 224 132 65 chrY 778219 779187 -50734397 - L1MB7 LINE L1 -944 5202 4142 1523 169 53 27 chrY 779187 779488 -50734096 - AluJo SINE Alu -1 311 3 2266 224 132 65 chrY 779488 779678 -50733906 - L1MB7 LINE L1 -2004 4142 3966 29 70 0 0 chrY 779740 779797 -50733787 + AT_rich Low_complexity Low_complexity 1 57 0 793 243 19 63 chrY 781364 781673 -50731911 + MLT2D LTR ERVL 83 475 -40 662 110 20 0 chrY 782503 782603 -50730981 - L1PA13 LINE L1 -265 5903 5802 1759 116 0 0 chrY 782604 782862 -50730722 + L1PA13 LINE L1 5902 6159 -4 458 75 15 0 chrY 782888 782955 -50730629 + (TA)n Simple_repeat Simple_repeat 2 69 0 2207 93 0 7 chrY 783323 783613 -50729971 - AluSx SINE Alu -24 288 1 24 0 0 0 chrY 783900 783924 -50729660 + AT_rich Low_complexity Low_complexity 1 24 0 21 0 0 0 chrY 785289 785310 -50728274 + AT_rich Low_complexity Low_complexity 1 21 0 27 0 0 0 chrY 785938 785965 -50727619 + AT_rich Low_complexity Low_complexity 1 27 0 228 287 124 39 chrY 786022 786151 -50727433 - MIR SINE MIR -52 210 71 312 191 119 79 chrY 786245 786371 -50727213 + L1MC3 LINE L1 5342 5472 -861 450 0 0 0 chrY 786374 786424 -50727160 + (TAAAA)n Simple_repeat Simple_repeat 5 54 0 5572 223 80 61 chrY 786425 786894 -50726690 + L1MC3 LINE L1 5658 6117 -1668 2219 102 13 0 chrY 786894 787199 -50726385 + AluSp SINE Alu 1 309 -4 5572 223 80 61 chrY 787199 788170 -50725414 + L1MC3 LINE L1 6117 7185 -600 249 213 0 0 chrY 788170 788217 -50725367 + MLT1H LTR MaLR 85 131 -418 5572 223 80 61 chrY 788217 788490 -50725094 + L1MC3 LINE L1 7185 7451 -334 8508 205 29 34 chrY 788499 790505 -50723079 + L1 LINE L1 13 2251 -5314 2005 144 3 0 chrY 790896 791195 -50722389 + AluSx SINE Alu 1 300 -12 1611 154 15 80 chrY 791949 792286 -50721298 - MER47A DNA MER2_type 0 366 52 318 188 100 25 chrY 793071 793151 -50720433 + MIR SINE MIR 103 188 -74 661 265 87 42 chrY 793686 794182 -50719402 - L1 LINE L1 -2983 3163 2635 358 270 0 63 chrY 794249 794423 -50719161 - L1 LINE L1 -3654 2492 2330 513 169 7 81 chrY 794453 794589 -50718995 - L1MB8 LINE L1 -1 6177 6052 * 4779 257 39 11 chrY 794588 796073 -50717511 - L1MEc LINE L1 -874 5341 3815 1598 203 70 0 chrY 796074 796433 -50717151 + Tigger2 DNA MER2_type 2 385 -2333 1401 124 26 0 chrY 796431 796664 -50716920 + Tigger2 DNA MER2_type 2404 2642 -76 * 267 205 27 89 chrY 796664 796776 -50716808 + L1 LINE L1 5062 5166 -2399 301 323 0 0 chrY 796776 796841 -50716743 - Tigger2 DNA MER2_type 0 2718 2654 3625 258 68 11 chrY 796841 796860 -50716724 - L1MEc LINE L1 -2501 3714 3698 1950 23 0 0 chrY 796860 797081 -50716503 - AluY SINE Alu -17 294 74 3625 258 68 11 chrY 797081 798567 -50715017 - L1MEc LINE L1 -2517 3698 2171 358 291 14 48 chrY 798599 798809 -50714775 + L1M4 LINE L1 2514 2716 -3430 441 298 98 46 chrY 798880 799249 -50714335 - L1MEc LINE L1 -4298 2098 1711 26 30 0 0 chrY 800273 800306 -50713278 + AT_rich Low_complexity Low_complexity 1 33 0 2238 92 0 16 chrY 801257 801561 -50712023 + AluSg SINE Alu 1 299 -11 501 245 35 0 chrY 801742 801885 -50711699 - MER63 DNA MER1_type 0 1060 913 591 219 39 0 chrY 801901 802029 -50711555 + L1M4b LINE L1 10 142 -6717 267 203 0 0 chrY 802031 802095 -50711489 + (TA)n Simple_repeat Simple_repeat 1 64 0 927 244 19 23 chrY 802377 802842 -50710742 + L1M4b LINE L1 400 921 -5938 3774 193 7 3 chrY 802847 803582 -50710002 - L1 LINE L1 -1910 4236 3499 1619 177 71 18 chrY 803583 803652 -50709932 + L1 LINE L1 4243 4307 -1839 2363 91 0 0 chrY 803652 803959 -50709625 + AluSc SINE Alu 1 307 -2 1619 177 71 18 chrY 803959 804285 -50709299 + L1 LINE L1 4307 4659 -1487 1718 109 0 0 chrY 804286 804515 -50709069 + AluSq SINE Alu 1 229 -84 6958 248 38 9 chrY 804581 806655 -50706929 - L1PA15-16 LINE L1 -1144 5705 3693 2807 7 0 0 chrY 806655 806965 -50706619 - AluYa5 SINE Alu -1 310 1 6958 248 38 9 chrY 806965 807788 -50705796 - L1PA15-16 LINE L1 -3156 3693 1246 4009 107 20 3 chrY 807960 808550 -50705034 - MER4A LTR ERV1 0 600 1 318 276 54 135 chrY 808676 809068 -50704516 - L1M2 LINE L1 -5781 1068 709 936 330 40 12 chrY 809736 810136 -50703448 - L1M2 LINE L1 -6429 420 10 6904 154 34 67 chrY 810139 811594 -50701990 - Tigger2 DNA MER2_type -756 1962 557 10429 177 37 12 chrY 811595 813882 -50699702 + Ricksha DNA DNA 296 2689 -557 324 100 0 0 chrY 813882 813932 -50699652 + L1 LINE L1 4784 4833 -1313 1394 280 31 50 chrY 814055 814618 -50698966 + L1MCb LINE L1 75 628 -5417 1792 151 27 3 chrY 814618 814956 -50698628 - L1MA9 LINE L1 -2 6310 5965 1394 280 31 50 chrY 814956 814978 -50698606 + L1MCb LINE L1 628 649 -5396 982 251 81 10 chrY 814958 815459 -50698125 + L1MCb LINE L1 2285 2837 -3727 * 1876 104 0 84 chrY 815459 815809 -50697775 + AluSq SINE Alu 1 324 0 982 251 81 10 chrY 815809 815887 -50697697 + L1MCb LINE L1 2837 2908 -3656 189 0 0 0 chrY 815950 815971 -50697613 + (CCA)n Simple_repeat Simple_repeat 1 21 0 10383 250 54 15 chrY 817007 821641 -50691943 + L1MB8 LINE L1 1621 6135 -1032 876 193 28 111 chrY 821640 821769 -50691815 + L1MB8 LINE L1 6596 6734 -465 * 1867 166 0 0 chrY 821769 822070 -50691514 - AluSx SINE Alu -11 301 1 876 193 28 111 chrY 822070 822192 -50691392 + L1MB8 LINE L1 6734 6824 -375 863 102 8 0 chrY 822192 822320 -50691264 + L1MA2 LINE L1 6169 6297 -7 876 193 28 111 chrY 822320 822354 -50691230 + L1MB8 LINE L1 6824 6859 -340 21 36 0 0 chrY 822385 822413 -50691171 + AT_rich Low_complexity Low_complexity 1 28 0 180 0 0 0 chrY 822549 822569 -50691015 + (TAAAAA)n Simple_repeat Simple_repeat 2 21 0 2573 139 27 2 chrY 822882 823329 -50690255 - L1MA2 LINE L1 -8 7715 7258 8094 192 27 29 chrY 823329 823984 -50689600 - L1MA2 LINE L1 -679 7044 6389 282 27 0 9 chrY 823984 824032 -50689552 + AluY SINE Alu 259 299 0 8094 192 27 29 chrY 824032 824318 -50689266 - L1MA2 LINE L1 -1334 6389 6104 414 0 0 0 chrY 824318 824364 -50689220 + (TG)n Simple_repeat Simple_repeat 1 46 0 8094 192 27 29 chrY 824364 825611 -50687973 - L1MA2 LINE L1 -1619 6104 4814 5814 220 42 14 chrY 825616 826885 -50686699 - L1MA2 LINE L1 -6240 1325 22 2107 127 0 0 chrY 827472 827772 -50685812 - AluSx SINE Alu -12 300 1 284 274 24 0 chrY 828101 828185 -50685399 + MIR3 SINE MIR 121 206 -2 29 28 0 0 chrY 828742 828778 -50684806 + AT_rich Low_complexity Low_complexity 1 36 0 327 85 0 0 chrY 831066 831113 -50682471 + (CA)n Simple_repeat Simple_repeat 2 48 0 482 301 45 6 chrY 831273 831429 -50682155 - MIR SINE MIR -55 207 46 261 362 26 17 chrY 831490 831606 -50681978 + L2 LINE L2 3197 3313 0 3419 220 34 11 chrY 831882 832740 -50680844 - L1MC3 LINE L1 -2 7783 6906 266 0 0 29 chrY 832740 832775 -50680809 + (TTTTG)n Simple_repeat Simple_repeat 1 34 0 1176 248 4 0 chrY 832778 833044 -50680540 - AluJo SINE Alu -34 278 12 1410 246 48 73 chrY 833050 833615 -50679969 - L1MC3 LINE L1 -863 6922 6372 450 269 0 8 chrY 833630 833749 -50679835 + L1MC4a LINE L1 1702 1819 -4565 4126 267 94 20 chrY 833753 835991 -50677593 + L1MC4a LINE L1 1919 4385 -1997 252 59 0 0 chrY 835991 836025 -50677559 + (TTTTA)n Simple_repeat Simple_repeat 2 35 0 4126 267 94 20 chrY 836025 836367 -50677217 + L1MC4a LINE L1 4385 4700 -1682 727 178 16 0 chrY 836368 836497 -50677087 + FLAM_C SINE Alu 1 131 -12 814 246 33 11 chrY 836500 836772 -50676812 + L1MC4a LINE L1 4693 4970 -1412 3597 271 75 41 chrY 836774 837929 -50675655 + MSTD-int LTR MaLR 541 1735 0 1001 215 75 31 chrY 837929 838278 -50675306 + MSTD LTR MaLR 1 396 0 4797 202 34 4 chrY 838278 839239 -50674345 + ERVL-B1 LTR ERVL 4768 5757 -7 2296 201 47 38 chrY 839239 839746 -50673838 + MLT2B1 LTR ERVL 1 512 -8 392 184 31 20 chrY 839747 839845 -50673739 + L1MB8 LINE L1 6074 6172 -6 690 224 82 0 chrY 840036 840183 -50673401 + L1PA13 LINE L1 1 159 -6628 * 14072 175 19 11 chrY 840181 841009 -50672575 + L1PA13 LINE L1 3007 3827 -2987 411 73 0 0 chrY 841009 841064 -50672520 + (TA)n Simple_repeat Simple_repeat 1 55 0 14072 175 19 11 chrY 841064 843946 -50669638 + L1PA13 LINE L1 3827 6744 -70 220 211 11 56 chrY 844571 844661 -50668923 + A-rich Low_complexity Low_complexity 4 89 0 828 302 44 40 chrY 844668 845142 -50668442 + L1MC4a LINE L1 5643 6118 -1926 262 64 0 43 chrY 845178 845225 -50668359 + (TA)n Simple_repeat Simple_repeat 2 46 0 316 253 10 40 chrY 845227 845326 -50668258 - L1MC4 LINE L1 -1340 6702 6607 349 230 65 50 chrY 845436 845575 -50668009 + L1MC4a LINE L1 6336 6476 -1568 * 3355 220 40 23 chrY 845567 847226 -50666358 + L1MC2 LINE L1 4199 5393 -753 1334 198 34 22 chrY 847227 847551 -50666033 + L1MC2 LINE L1 6006 6333 -11 3439 225 73 24 chrY 847635 848493 -50665091 + L1MD2 LINE L1 5276 6194 -165 2247 62 21 0 chrY 848493 848783 -50664801 - AluY SINE Alu -15 296 1 3439 225 73 24 chrY 848783 848949 -50664635 + L1MD2 LINE L1 6194 6350 -9 23 0 0 0 chrY 850940 850963 -50662621 + AT_rich Low_complexity Low_complexity 1 23 0 996 296 47 73 chrY 851440 852437 -50661147 + L1ME LINE L1 490 1460 -5070 593 307 106 45 chrY 852438 853624 -50659960 + L1ME LINE L1 1413 2713 -3929 2847 203 50 9 chrY 853634 854486 -50659098 + L1MC2 LINE L1 4967 5850 -494 645 333 66 35 chrY 854487 855141 -50658443 - L1M4 LINE L1 -1531 4615 3942 186 43 0 0 chrY 855144 855167 -50658417 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 1766 120 14 25 chrY 855170 855454 -50658130 - AluSx SINE Alu -31 281 1 591 76 0 0 chrY 856086 856203 -50657381 - AluY SINE Alu 0 320 204 1944 114 3 7 chrY 856277 856601 -50656983 - AluSg SINE Alu 0 310 1 22 35 0 0 chrY 857902 857931 -50655653 + AT_rich Low_complexity Low_complexity 1 29 0 2177 90 13 26 chrY 858118 858429 -50655155 + AluSx SINE Alu 1 307 -5 2162 82 3 44 chrY 858635 858954 -50654630 + AluY SINE Alu 1 306 -5 279 337 68 5 chrY 862832 863032 -50650552 - L1ME LINE L1 -594 5572 5361 438 234 101 39 chrY 863042 863328 -50650256 - L1ME LINE L1 -803 5343 5040 342 125 0 31 chrY 863333 863397 -50650187 - L1PA8 LINE L1 -4 6168 6107 1631 74 83 0 chrY 863397 863627 -50649957 - L1PA8 LINE L1 -30 6142 5894 1300 129 23 5 chrY 863696 863913 -50649671 - pTR5 LTR ERV1 -2046 392 172 365 224 10 0 chrY 863916 864014 -50649570 - LTR30 LTR ERV1 -80 642 544 4133 136 59 79 chrY 864014 865031 -50648553 - pTR5 LTR ERV1 -413 2025 743 21 0 0 0 chrY 865681 865702 -50647882 + AT_rich Low_complexity Low_complexity 1 21 0 34 42 0 0 chrY 866541 866589 -50646995 + AT_rich Low_complexity Low_complexity 1 48 0 212 250 0 0 chrY 867128 867172 -50646412 + (TG)n Simple_repeat Simple_repeat 2 45 0 21 36 0 0 chrY 867628 867656 -50645928 + AT_rich Low_complexity Low_complexity 1 28 0 32209 109 10 44 chrY 869430 871825 -50641759 - L1PA7 LINE L1 -5 6149 3675 2227 105 0 23 chrY 871825 872130 -50641454 - AluY SINE Alu -13 298 1 32209 109 10 44 chrY 872130 875704 -50637880 - L1PA7 LINE L1 -2479 3675 414 243 0 0 0 chrY 875704 875731 -50637853 + (CAAAA)n Simple_repeat Simple_repeat 2 28 0 32209 109 10 44 chrY 875731 876121 -50637463 - L1PA7 LINE L1 -5740 414 12 1059 166 5 49 chrY 876152 876357 -50637227 + AluJb SINE Alu 99 294 -18 2445 170 17 7 chrY 876697 877114 -50636470 - MST-int LTR MaLR -173 1478 1058 230 307 30 10 chrY 877587 877688 -50635896 - L1ME LINE L1 -5962 108 6 23 0 0 0 chrY 877688 877711 -50635873 + AT_rich Low_complexity Low_complexity 1 23 0 26 30 0 0 chrY 878750 878783 -50634801 + AT_rich Low_complexity Low_complexity 1 33 0 345 208 0 0 chrY 879770 879847 -50633737 + (TATATG)n Simple_repeat Simple_repeat 6 82 0 331 311 0 0 chrY 879848 879938 -50633646 + L1MC4 LINE L1 6615 6704 -1338 22 56 0 0 chrY 880119 880155 -50633429 + AT_rich Low_complexity Low_complexity 1 36 0 186 200 0 0 chrY 880531 880577 -50633007 + (TA)n Simple_repeat Simple_repeat 2 50 -6 2231 202 103 41 chrY 880577 881313 -50632271 + LTR1 LTR ERV1 1 782 -3 186 200 0 0 chrY 881313 881321 -50632263 + (TA)n Simple_repeat Simple_repeat 49 56 0 21 36 0 0 chrY 883943 883971 -50629613 + AT_rich Low_complexity Low_complexity 1 28 0 306 325 107 24 chrY 884964 885133 -50628451 + L1MEd LINE L1 3 185 -5934 2164 149 20 73 chrY 885171 885368 -50628216 + MSTB LTR MaLR 1 207 -219 2034 154 0 0 chrY 885368 885680 -50627904 + AluSx SINE Alu 1 312 0 2164 149 20 73 chrY 885680 885932 -50627652 + MSTB LTR MaLR 207 426 0 276 331 84 24 chrY 885970 886136 -50627448 + L1MEd LINE L1 269 444 -5675 1166 304 22 25 chrY 886315 886716 -50626868 + MLT1E3 LTR MaLR 225 624 0 224 149 21 0 chrY 887071 887118 -50626466 + (TCTA)n Simple_repeat Simple_repeat 3 50 0 642 284 148 33 chrY 887129 887651 -50625933 + L1MC4a LINE L1 5290 5871 -1937 1979 168 94 3 chrY 887831 888223 -50625361 - MSTA LTR MaLR 0 428 1 2139 145 23 6 chrY 888223 888575 -50625009 - MSTA-int LTR MaLR 0 1651 1294 326 309 44 39 chrY 888651 888832 -50624752 + LTR16C LTR ERVL 260 441 -50 380 293 94 17 chrY 888958 889310 -50624274 + L1ME3A LINE L1 5493 5878 -288 435 151 65 11 chrY 889389 889482 -50624102 + MER4A LTR ERV1 1 98 -566 1590 140 164 75 chrY 889482 889853 -50623731 + MER4A LTR ERV1 261 664 0 2368 105 58 43 chrY 889856 890173 -50623411 + MER4A-int LTR ERV1 1 312 -6286 315 0 0 0 chrY 890173 890208 -50623376 + (TG)n Simple_repeat Simple_repeat 1 35 0 2368 105 58 43 chrY 890208 890482 -50623102 + MER4A-int LTR ERV1 312 660 -5938 1658 77 89 52 chrY 890469 890864 -50622720 + MER4A-int LTR ERV1 504 817 -4198 * 3238 77 80 4 chrY 890857 891367 -50622217 + MER4A-int LTR ERV1 1809 2357 -4241 281 154 19 0 chrY 891367 891419 -50622165 + MER4A LTR ERV1 608 660 -4 1905 160 150 5 chrY 891859 892233 -50621351 + MSTA LTR MaLR 1 428 0 387 41 0 0 chrY 893138 893187 -50620397 + (TG)n Simple_repeat Simple_repeat 2 50 0 192 40 0 0 chrY 893836 893861 -50619723 + (A)n Simple_repeat Simple_repeat 1 25 0 24 0 0 0 chrY 894215 894239 -50619345 + AT_rich Low_complexity Low_complexity 1 24 0 268 358 80 11 chrY 894546 894668 -50618916 - MIR SINE MIR -16 246 105 2023 90 8 0 chrY 894668 894934 -50618650 + AluSq SINE Alu 38 305 -8 268 358 80 11 chrY 894934 894998 -50618586 - MIR SINE MIR -157 105 47 1596 201 0 14 chrY 895624 895913 -50617671 + AluJo SINE Alu 3 287 -25 273 29 0 0 chrY 895955 895989 -50617595 + (CA)n Simple_repeat Simple_repeat 2 35 0 234 0 0 0 chrY 896148 896174 -50617410 + (CA)n Simple_repeat Simple_repeat 2 27 0 253 254 18 0 chrY 896303 896358 -50617226 - L2 LINE L2 -14 3299 3244 2155 130 3 0 chrY 897405 897712 -50615872 + AluSq SINE Alu 3 310 -3 908 216 5 32 chrY 897800 897970 -50615614 + Tigger1 DNA MER2_type 1 165 -2253 3408 101 63 51 chrY 897970 898573 -50615011 - MER4B LTR ERV1 0 610 1 908 216 5 32 chrY 898573 898615 -50614969 + Tigger1 DNA MER2_type 165 207 -2211 505 237 63 78 chrY 898615 898975 -50614609 + LTR18B LTR ERVL 1 600 -2 12567 153 17 19 chrY 898983 900044 -50613540 + Tigger1 DNA MER2_type 203 1264 -1154 2384 77 0 0 chrY 900044 900330 -50613254 - AluY SINE Alu -25 286 1 12567 153 17 19 chrY 900330 901487 -50612097 + Tigger1 DNA MER2_type 1264 2417 -1 1138 232 3 35 chrY 902169 902488 -50611096 - L1PBb LINE L1 -869 6715 6407 6057 133 193 90 chrY 902488 904026 -50609558 - pTR5 LTR ERV1 -2 2436 741 11167 232 28 15 chrY 904038 904423 -50609161 - L1PBb LINE L1 -1183 6401 6023 2189 197 26 5 chrY 904423 904840 -50608744 - MSTB LTR MaLR 0 426 1 11167 232 28 15 chrY 904840 908955 -50604629 - L1PBb LINE L1 -1561 6023 1752 551 313 38 34 chrY 909147 909412 -50604172 - L1PBb LINE L1 -5788 1797 1532 225 222 0 0 chrY 909569 909614 -50603970 + L1M2b LINE L1 168 212 -6997 518 175 21 10 chrY 909662 909759 -50603825 + MER4A LTR ERV1 1 98 -566 1612 136 14 36 chrY 909759 910111 -50603473 + MER4A LTR ERV1 261 663 -1 504 246 8 8 chrY 910113 910235 -50603349 - L1PBb LINE L1 -7450 131 10 821 214 60 15 chrY 910305 910506 -50603078 + L1M4b LINE L1 4 213 -6646 524 125 0 0 chrY 910506 910586 -50602998 + MADE1 DNA Mariner 1 80 0 233 282 84 0 chrY 910656 910727 -50602857 + MER50 LTR ERV1 46 122 -612 1136 270 122 58 chrY 910728 910917 -50602667 + MER50 LTR ERV1 26 201 -533 7562 29 5 0 chrY 910917 912013 -50601571 + L1PA5 LINE L1 5053 6152 -2 1136 270 122 58 chrY 912013 912385 -50601199 + MER50 LTR ERV1 201 633 -101 3267 106 11 42 chrY 912385 912912 -50600672 - MER9 LTR ERVK 0 511 1 1136 270 122 58 chrY 912912 912971 -50600613 + MER50 LTR ERV1 633 687 -47 393 274 28 9 chrY 913001 913107 -50600477 + MER50-int LTR ERV1 18 125 -7080 6182 255 22 50 chrY 913171 914967 -50598617 + MER50-int LTR ERV1 97 1843 -5362 3013 167 14 24 chrY 914966 915461 -50598123 + MER50-int LTR ERV1 1004 1502 -3378 * 2138 131 0 0 chrY 915461 915758 -50597826 + AluSx SINE Alu 1 297 -15 3013 167 14 24 chrY 915758 916567 -50597017 + MER50-int LTR ERV1 1502 4394 -486 414 168 76 42 chrY 916671 916790 -50596794 + MER50-int LTR ERV1 3608 3730 -2868 922 140 29 22 chrY 916830 917037 -50596547 + MER50-int LTR ERV1 3738 4539 -341 482 133 0 0 chrY 917030 917105 -50596479 + MER50-int LTR ERV1 2883 2957 -2989 * 792 210 0 6 chrY 917099 917256 -50596328 + MER50-int LTR ERV1 3689 3844 -3693 * 1052 219 19 0 chrY 917253 917458 -50596126 + MER50-int LTR ERV1 6180 6388 -817 546 345 15 8 chrY 917442 917709 -50595875 + MER50-int LTR ERV1 3744 4012 -273 * 776 263 44 19 chrY 917724 917929 -50595655 + MER50-int LTR ERV1 6985 7194 -11 380 273 109 0 chrY 917933 918043 -50595541 + MER50 LTR ERV1 1 122 -612 1206 284 128 36 chrY 918044 918653 -50594931 + MER50 LTR ERV1 26 690 -44 3055 293 109 19 chrY 918713 920615 -50592969 + L1M4b LINE L1 228 2263 -4696 1894 262 51 8 chrY 920585 921448 -50592136 + L1M4b LINE L1 3279 4178 -2779 * 2639 216 100 7 chrY 921567 922642 -50590942 - L1MB8 LINE L1 0 6178 4993 460 256 15 36 chrY 922681 922818 -50590766 + MERVL-C2 LTR ERVL 3288 3421 -2064 * 4825 223 23 2 chrY 922799 923766 -50589818 + MERVL-C2 LTR ERVL 3525 4511 -1253 1587 220 25 35 chrY 923766 924162 -50589422 - MER50 LTR ERV1 -1 733 342 1448 84 0 0 chrY 924163 924342 -50589242 - AluY SINE Alu 0 311 133 2499 68 0 0 chrY 924342 924649 -50588935 - AluY SINE Alu -4 307 1 862 185 13 13 chrY 924729 924886 -50588698 - MER50 LTR ERV1 -566 168 12 387 335 7 7 chrY 924977 925132 -50588452 - MER52A LTR ERV1 0 1755 1601 841 238 49 117 chrY 925135 925546 -50588038 - MER52A LTR ERV1 -281 1474 1092 * 1064 216 52 93 chrY 925531 925855 -50587729 - MER52A LTR ERV1 -785 970 660 9097 113 12 24 chrY 925857 926844 -50586740 - MER52-int LTR ERV1 0 7091 6124 1963 152 3 3 chrY 926844 927141 -50586443 - AluSx SINE Alu -14 298 2 9097 113 12 24 chrY 927141 927512 -50586072 - MER52-int LTR ERV1 -967 6124 5750 19314 159 27 17 chrY 927527 931073 -50582511 - MER52-int LTR ERV1 -2223 4868 1003 191 269 30 45 chrY 931088 931155 -50582429 + MIR3 SINE MIR 135 200 -8 2023 242 42 12 chrY 931155 931729 -50581855 + MERVL-C2 LTR ERVL 5167 5757 -7 1757 234 46 7 chrY 931738 932173 -50581411 + MLT2C2 LTR ERVL 11 462 -2 21 57 0 0 chrY 932199 932234 -50581350 + AT_rich Low_complexity Low_complexity 1 35 0 415 259 41 53 chrY 932279 932449 -50581135 + MER3 DNA MER1_type 28 195 -14 1492 290 37 27 chrY 932753 933342 -50580242 - L1MEc LINE L1 -5765 631 37 196 159 0 43 chrY 933427 933496 -50580088 + A-rich Low_complexity Low_complexity 4 69 0 2051 73 0 15 chrY 933625 933886 -50579698 - AluY SINE Alu -16 295 39 21 36 0 0 chrY 934275 934303 -50579281 + AT_rich Low_complexity Low_complexity 1 28 0 2306 97 10 0 chrY 935014 935314 -50578270 + AluSc SINE Alu 1 303 -6 294 238 203 21 chrY 935348 935491 -50578093 - L1MD3 LINE L1 0 7995 7827 227 88 70 44 chrY 935491 935605 -50577979 + (TA)n Simple_repeat Simple_repeat 2 118 0 785 223 102 28 chrY 935611 935894 -50577690 - L1MC3 LINE L1 -185 7600 7297 * 1033 277 20 3 chrY 935893 936189 -50577395 - L1MC3 LINE L1 -926 6859 6559 1143 216 37 11 chrY 936237 936505 -50577079 - L1MC3 LINE L1 -1210 6575 6301 1222 237 58 6 chrY 936537 936862 -50576722 - L1MB7 LINE L1 -20 6164 5823 3649 223 60 27 chrY 936944 938084 -50575500 - L1MC2 LINE L1 -144 6200 4980 554 106 0 0 chrY 938084 938178 -50575406 - L1PA15 LINE L1 -4 6161 6068 3649 223 60 27 chrY 938178 938896 -50574688 - L1MC2 LINE L1 -1364 4980 4288 4139 158 53 12 chrY 938896 939729 -50573855 + L1MA7 LINE L1 5425 6291 0 873 274 50 6 chrY 939742 940059 -50573525 - L1MC2 LINE L1 -3386 2760 2430 495 157 56 0 chrY 940073 940162 -50573422 - AluJ/FLAM SINE Alu -218 94 1 9615 224 63 16 chrY 940162 944015 -50569569 - L1PB4 LINE L1 -154 6705 2662 5825 236 20 7 chrY 943989 946231 -50567353 - L1PA13 LINE L1 -3160 3637 1355 * 2616 142 70 32 chrY 946228 946568 -50567016 + THE1-int LTR MaLR 811 1173 -407 * 2350 98 0 0 chrY 946568 946863 -50566721 + AluSg SINE Alu 1 295 -15 2616 142 70 32 chrY 946863 946965 -50566619 + THE1-int LTR MaLR 1173 1270 -310 6030 124 30 20 chrY 946977 948067 -50565517 + L1MA2 LINE L1 5206 6304 0 1074 267 49 25 chrY 948100 948897 -50564687 - L1M4 LINE L1 -3473 2909 2094 2494 261 68 29 chrY 948967 950150 -50563434 - L1M4 LINE L1 -4485 1899 777 915 234 98 51 chrY 950565 951013 -50562571 + L1ME1 LINE L1 4709 5177 -969 * 24913 153 26 17 chrY 951007 955242 -50558342 - L1PA8 LINE L1 -20 6467 2171 2193 61 0 0 chrY 955242 955505 -50558079 + AluY SINE Alu 36 298 -13 24913 153 26 17 chrY 955505 956919 -50556665 - L1PA8 LINE L1 -4316 2171 771 2503 191 14 14 chrY 956925 957423 -50556161 - L1PA8 LINE L1 -5373 502 5 1027 277 110 22 chrY 957537 957563 -50556021 + L1ME1 LINE L1 5285 5307 -859 222 37 0 0 chrY 957563 957590 -50555994 + (CAA)n Simple_repeat Simple_repeat 1 27 0 1027 277 110 22 chrY 957590 958122 -50555462 + L1ME1 LINE L1 5307 5898 -268 2366 223 13 2 chrY 958124 958577 -50555007 + MLT2B2 LTR ERVL 1 458 -57 271 257 0 0 chrY 958577 958647 -50554937 + CT-rich Low_complexity Low_complexity 2 71 0 2650 113 19 16 chrY 959471 959897 -50553687 - L1PA8 LINE L1 -1089 5057 4631 6542 74 18 9 chrY 959899 960988 -50552596 + L1PA8 LINE L1 5060 6156 -16 2327 95 3 0 chrY 960992 961288 -50552296 - AluSg SINE Alu -13 297 1 2887 155 20 0 chrY 961313 961804 -50551780 - L1PA13 LINE L1 -11 6152 5652 3439 212 21 0 chrY 961854 962599 -50550985 + L1P4 LINE L1 3991 4751 -1395 2178 80 48 0 chrY 962601 962890 -50550694 + AluSg SINE Alu 1 303 -7 216 0 0 0 chrY 962896 962920 -50550664 + (A)n Simple_repeat Simple_repeat 1 24 0 23 54 0 0 chrY 965178 965215 -50548369 + AT_rich Low_complexity Low_complexity 1 37 0 734 180 40 29 chrY 967108 967291 -50546293 + MIR SINE MIR 31 213 -49 2914 186 6 6 chrY 967390 968257 -50545327 + L1P4 LINE L1 4739 5603 -558 28 48 0 0 chrY 969380 969422 -50544162 + AT_rich Low_complexity Low_complexity 1 42 0 31 0 0 0 chrY 969565 969596 -50543988 + AT_rich Low_complexity Low_complexity 1 31 0 33 43 0 0 chrY 969635 969682 -50543902 + AT_rich Low_complexity Low_complexity 1 47 0 234 0 0 0 chrY 969685 969711 -50543873 + (TG)n Simple_repeat Simple_repeat 1 26 0 534 342 16 5 chrY 969811 969998 -50543586 - MIR SINE MIR -56 206 18 2046 144 3 0 chrY 970287 970592 -50542992 + AluSx SINE Alu 1 306 -6 941 258 34 18 chrY 971059 971416 -50542168 + MSTD LTR MaLR 1 396 0 1892 155 117 8 chrY 971659 972045 -50541539 + MSTA LTR MaLR 1 428 0 31 26 0 0 chrY 972307 972345 -50541239 + AT_rich Low_complexity Low_complexity 1 38 0 359 256 56 50 chrY 972735 972915 -50540669 + L1MCc LINE L1 28 208 -6215 482 279 63 11 chrY 973183 973452 -50540132 + L1ME2 LINE L1 4960 5242 -904 1426 230 70 28 chrY 973475 973544 -50540040 + L1ME2 LINE L1 5663 5728 -436 2224 109 0 0 chrY 973544 973847 -50539737 + AluSc SINE Alu 2 304 -5 1426 230 70 28 chrY 973847 974250 -50539334 + L1ME2 LINE L1 5728 6155 -9 324 374 0 8 chrY 974290 974413 -50539171 + MER5A DNA MER1_type 64 185 -4 2058 268 51 45 chrY 974533 975290 -50538294 - L1MEc LINE L1 -4923 1473 706 2191 64 3 7 chrY 975290 975614 -50537970 + AluY SINE Alu 1 311 0 2058 268 51 45 chrY 975614 975913 -50537671 - L1MEc LINE L1 -5690 706 410 488 264 61 17 chrY 976065 976296 -50537288 - L1MDb LINE L1 -5000 1083 843 5048 129 15 4 chrY 976592 977390 -50536194 - L1PA16 LINE L1 0 6166 5360 444 301 81 56 chrY 977450 977859 -50535725 - L1MDb LINE L1 -5416 654 236 35 63 0 0 chrY 978923 978986 -50534598 + AT_rich Low_complexity Low_complexity 1 63 0 187 259 12 111 chrY 979124 979205 -50534379 - L2 LINE L2 -4 3309 3237 42 0 0 0 chrY 979381 979423 -50534161 + AT_rich Low_complexity Low_complexity 1 42 0 1645 142 82 51 chrY 979706 979889 -50533695 + THE1B LTR MaLR 1 177 -187 204 40 0 0 chrY 979889 979914 -50533670 + (TC)n Simple_repeat Simple_repeat 1 25 0 1645 142 82 51 chrY 979914 980083 -50533501 + THE1B LTR MaLR 177 364 0 7455 148 106 51 chrY 980085 981580 -50532004 + THE1B-int LTR MaLR 3 1580 0 1603 157 74 44 chrY 981580 981944 -50531640 + THE1C LTR MaLR 1 375 0 1659 265 40 19 chrY 981945 982416 -50531168 + LTR40a LTR ERVL 37 517 -2 2624 183 66 74 chrY 983298 983518 -50530066 + MER67B LTR ERV1 1 221 -440 2757 118 47 2 chrY 983518 983983 -50529601 - LTR19A LTR ERV1 0 486 1 2624 183 66 74 chrY 983983 984089 -50529495 + MER67B LTR ERV1 221 326 -335 2662 48 0 0 chrY 984089 984400 -50529184 - AluY SINE Alu 0 311 1 2624 183 66 74 chrY 984400 984738 -50528846 + MER67B LTR ERV1 326 661 0 281 360 48 0 chrY 985391 985538 -50528046 + MIR SINE MIR 30 183 -79 1746 179 107 87 chrY 985540 986128 -50527456 + MER4A LTR ERV1 1 600 0 202 390 77 16 chrY 986355 986537 -50527047 + L3 LINE CR1 115 307 -1270 339 352 138 15 chrY 987116 987312 -50526272 + L3 LINE CR1 473 692 -885 351 391 87 16 chrY 987401 987713 -50525871 + L3 LINE CR1 1235 1568 -9 24 0 0 0 chrY 987757 987781 -50525803 + AT_rich Low_complexity Low_complexity 1 24 0 2397 100 42 50 chrY 987959 988339 -50525245 + MER51B LTR ERV1 1 377 0 2421 148 76 17 chrY 988609 989068 -50524516 - LTR19A LTR ERV1 0 486 1 258 376 11 0 chrY 989386 989479 -50524105 - MIR3 SINE MIR -102 106 13 22 35 0 0 chrY 991479 991508 -50522076 + AT_rich Low_complexity Low_complexity 1 29 0 24 53 0 0 chrY 991562 991600 -50521984 + AT_rich Low_complexity Low_complexity 1 38 0 257 280 76 0 chrY 993091 993209 -50520375 - L1MC/D LINE L1 -2015 5793 5667 26 0 0 0 chrY 993209 993235 -50520349 + AT_rich Low_complexity Low_complexity 1 26 0 254 299 17 34 chrY 993251 993368 -50520216 - L1MC/D LINE L1 -2200 5585 5471 641 261 67 15 chrY 993950 994145 -50519439 - MIR SINE MIR -57 205 1 1541 201 48 20 chrY 994320 994712 -50518872 + L1MB1 LINE L1 5761 6163 -5 225 0 0 0 chrY 995371 995396 -50518188 + (CA)n Simple_repeat Simple_repeat 2 26 0 348 339 46 0 chrY 995538 995647 -50517937 - L2 LINE L2 -1 3271 3158 323 365 52 16 chrY 996171 996363 -50517221 - MIR SINE MIR -19 243 45 1535 80 0 68 chrY 996998 997081 -50516503 + L1MA1 LINE L1 6057 6144 -158 2102 126 0 3 chrY 997081 997391 -50516193 - AluSx SINE Alu -3 309 1 1535 80 0 68 chrY 997391 997571 -50516013 + L1MA1 LINE L1 6144 6302 0 1338 153 36 0 chrY 998130 998352 -50515232 + MER30 DNA MER1_type 1 230 0 3143 213 50 48 chrY 998780 999614 -50513970 - L1MA10 LINE L1 -3 6331 5496 1988 91 66 3 chrY 999614 999900 -50513684 - AluSx SINE Alu -8 304 1 3501 212 85 24 chrY 999948 1000416 -50513168 - L1MA8 LINE L1 -10 6281 5843 441 0 0 0 chrY 1000416 1000465 -50513119 + (TA)n Simple_repeat Simple_repeat 1 49 0 3501 212 85 24 chrY 1000465 1001119 -50512465 - L1MA8 LINE L1 -448 5843 5092 827 246 10 0 chrY 1001108 1001303 -50512281 + L1 LINE L1 4030 4226 -1920 * 7194 215 176 12 chrY 1001328 1003076 -50510508 + L1M1 LINE L1 13 2046 -5519 * 10659 191 58 42 chrY 1003073 1004165 -50509419 + L1M1 LINE L1 2565 3638 -3927 180 97 0 0 chrY 1004165 1004196 -50509388 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 10659 191 58 42 chrY 1004196 1005030 -50508554 + L1M1 LINE L1 3638 4457 -3108 1039 116 22 6 chrY 1005030 1005211 -50508373 + L1MA1 LINE L1 6119 6302 0 10659 191 58 42 chrY 1005211 1005991 -50507593 + L1M1 LINE L1 4457 5223 -2342 639 140 0 0 chrY 1005991 1006091 -50507493 - FLAM_C SINE Alu -12 131 32 10659 191 58 42 chrY 1006091 1007407 -50506177 + L1M1 LINE L1 5223 6753 -812 236 164 0 55 chrY 1007436 1007491 -50506093 + Alu SINE Alu 251 302 0 2896 176 14 9 chrY 1007509 1008078 -50505506 + L1 LINE L1 4553 5124 -1022 2003 141 3 3 chrY 1008122 1008140 -50505444 - AluSx SINE Alu 0 312 295 186 43 0 0 chrY 1008140 1008163 -50505421 + (TATG)n Simple_repeat Simple_repeat 2 24 0 2003 141 3 3 chrY 1008163 1008456 -50505128 - AluSx SINE Alu -16 296 1 26 30 0 0 chrY 1008860 1008893 -50504691 + AT_rich Low_complexity Low_complexity 1 33 0 21 0 0 0 chrY 1009119 1009140 -50504444 + AT_rich Low_complexity Low_complexity 1 21 0 204 299 35 23 chrY 1009471 1009558 -50504026 - MIR SINE MIR -116 146 59 6152 156 5 1 chrY 1010625 1011589 -50501995 - L1PA14 LINE L1 -4895 2686 1719 9596 233 46 22 chrY 1011596 1012950 -50500634 + L1PA14 LINE L1 2711 4030 -3554 2010 164 13 24 chrY 1012950 1013327 -50500257 - THE1C LTR MaLR -2 373 1 9596 233 46 22 chrY 1013327 1014632 -50498952 + L1PA14 LINE L1 4030 5426 -2158 1830 176 83 18 chrY 1014632 1015150 -50498434 + MLT2A2 LTR ERVL 1 546 -8 6519 199 31 3 chrY 1015153 1015813 -50497771 + L1PA14 LINE L1 5421 6062 -1537 2652 20 7 0 chrY 1015813 1016116 -50497468 - AluY SINE Alu -6 305 1 6519 199 31 3 chrY 1016116 1016943 -50496641 + L1PA14 LINE L1 6062 6950 -649 324 0 0 0 chrY 1016943 1016979 -50496605 + (TAA)n Simple_repeat Simple_repeat 1 36 0 6519 199 31 3 chrY 1016979 1017647 -50495937 + L1PA14 LINE L1 6950 7598 -1 33 0 0 0 chrY 1018437 1018470 -50495114 + AT_rich Low_complexity Low_complexity 1 33 0 21 0 0 0 chrY 1018718 1018739 -50494845 + AT_rich Low_complexity Low_complexity 1 21 0 2359 65 0 32 chrY 1018994 1019304 -50494280 - AluY SINE Alu -11 300 1 434 303 12 37 chrY 1020189 1020430 -50493154 + L1MCb LINE L1 41 275 -5770 1629 220 39 21 chrY 1020526 1021197 -50492387 + L1M4 LINE L1 4880 5566 -618 1520 232 135 7 chrY 1021190 1021738 -50491846 + L1MC3 LINE L1 5376 5993 -2049 * 1087 194 90 19 chrY 1021751 1022019 -50491565 - MLT1C LTR MaLR -153 314 28 3154 213 57 18 chrY 1022058 1022890 -50490694 + L1MC3 LINE L1 6798 7661 -124 605 159 18 9 chrY 1022890 1023003 -50490581 - MER57A LTR ERV1 -289 114 1 1383 149 7 64 chrY 1023003 1023285 -50490299 - MER57A-int LTR ERV1 0 7537 7272 635 163 24 8 chrY 1023285 1023408 -50490176 - LTR54B LTR ERV1 -371 127 3 4725 91 12 0 chrY 1023408 1024058 -50489526 - MER57A-int LTR ERV1 -391 7146 6489 4913 88 9 54 chrY 1024069 1024452 -50489132 + L1PB1 LINE L1 5397 5796 -355 210 105 0 0 chrY 1024452 1024490 -50489094 + (TTTA)n Simple_repeat Simple_repeat 1 38 0 4913 88 9 54 chrY 1024490 1024710 -50488874 + L1PB1 LINE L1 5796 5958 -193 2411 77 0 0 chrY 1024710 1025007 -50488577 + AluY SINE Alu 1 297 -14 4913 88 9 54 chrY 1025007 1025193 -50488391 + L1PB1 LINE L1 5958 6151 0 14244 104 26 19 chrY 1025206 1027062 -50486522 - MER57A-int LTR ERV1 -1423 6114 4272 180 0 0 0 chrY 1027062 1027082 -50486502 + (TTG)n Simple_repeat Simple_repeat 2 21 0 1814 147 0 0 chrY 1027089 1027354 -50486230 - AluSx SINE Alu -37 275 11 14244 104 26 19 chrY 1027354 1027697 -50485887 - MER57A-int LTR ERV1 -3270 4267 3892 6642 138 24 16 chrY 1027699 1028797 -50484787 - MER57A-int LTR ERV1 -3761 2185 1079 1707 142 4 11 chrY 1028783 1029043 -50484541 - MER57A-int LTR ERV1 -5328 618 361 * 5273 139 7 12 chrY 1029036 1029844 -50483740 - MER57A-int LTR ERV1 -6731 806 3 2433 145 10 2 chrY 1029846 1030246 -50483338 - MER57A LTR ERV1 0 403 1 23 33 0 0 chrY 1030951 1030981 -50482603 + AT_rich Low_complexity Low_complexity 1 30 0 3660 115 13 0 chrY 1031119 1031666 -50481918 + MER41A LTR ERV1 1 554 0 1199 191 0 4 chrY 1031713 1031943 -50481641 + L1PB4 LINE L1 5928 6156 0 5951 55 1 18 chrY 1032491 1033270 -50480314 + MER4E LTR ERV1 1 766 0 21 0 0 0 chrY 1033662 1033683 -50479901 + AT_rich Low_complexity Low_complexity 1 21 0 22 80 0 0 chrY 1033958 1034008 -50479576 + AT_rich Low_complexity Low_complexity 1 50 0 180 259 0 19 chrY 1035030 1035084 -50478500 + L2 LINE L2 1968 2020 -1294 825 332 82 47 chrY 1035221 1035282 -50478302 + L2 LINE L2 2284 2341 -972 327 25 0 0 chrY 1035282 1035322 -50478262 + (TG)n Simple_repeat Simple_repeat 1 40 0 825 332 82 47 chrY 1035322 1035534 -50478050 + L2 LINE L2 2341 2544 -769 2059 79 3 20 chrY 1035534 1035837 -50477747 + L1MA1 LINE L1 6004 6301 -1 825 332 82 47 chrY 1035837 1036324 -50477260 + L2 LINE L2 2544 3068 -245 1797 185 3 0 chrY 1039672 1040100 -50473484 + AluJo SINE Alu 8 436 0 518 176 107 23 chrY 1040187 1040318 -50473266 + L1MC5 LINE L1 7305 7446 -515 1360 176 0 0 chrY 1040326 1040547 -50473037 - AluJo SINE Alu -8 304 84 473 191 38 118 chrY 1040574 1040682 -50472902 + L1MC5 LINE L1 7478 7593 -368 288 111 0 0 chrY 1040682 1040727 -50472857 + (TG)n Simple_repeat Simple_repeat 1 45 0 473 191 38 118 chrY 1040727 1040749 -50472835 + L1MC5 LINE L1 7593 7615 -346 2515 71 0 3 chrY 1040749 1041057 -50472527 + AluY SINE Alu 1 307 -4 473 191 38 118 chrY 1041057 1041213 -50472371 + L1MC5 LINE L1 7615 7742 -219 * 1275 231 39 3 chrY 1041185 1041493 -50472091 - L1MD2 LINE L1 -13 6346 6028 747 242 7 0 chrY 1041515 1041668 -50471916 - AluJb SINE Alu -22 290 137 2746 232 40 11 chrY 1041671 1042399 -50471185 - L1MD2 LINE L1 -323 6036 5288 * 14720 112 7 16 chrY 1042385 1042400 -50471184 + L1P3 LINE L1 407 421 -6040 15498 95 4 5 chrY 1042400 1045404 -50468180 - L1PA7 LINE L1 -4 6150 3148 14720 112 7 16 chrY 1045404 1048158 -50465426 + L1P3 LINE L1 421 3158 -3303 2199 95 7 0 chrY 1048158 1048441 -50465143 + AluY SINE Alu 1 285 -26 14720 112 7 16 chrY 1048441 1048669 -50464915 + L1P3 LINE L1 3158 3387 -3074 524 167 28 9 chrY 1048664 1048772 -50464812 - L1MD2 LINE L1 -850 5296 5187 * 352 128 291 12 chrY 1048846 1048932 -50464652 + MER34 LTR ERV1 6 115 -427 698 255 129 32 chrY 1048935 1049297 -50464287 + MER39 LTR ERV1 221 665 -42 2295 282 137 26 chrY 1049331 1050761 -50462823 - L1MD2 LINE L1 -1036 5110 3522 1100 141 15 201 chrY 1050749 1050958 -50462626 - L1MDb LINE L1 -4997 1412 1336 * 1494 210 15 4 chrY 1050958 1051225 -50462359 - AluJb SINE Alu -38 274 5 1100 141 15 201 chrY 1051225 1051482 -50462102 - L1MDb LINE L1 -5073 1336 1033 252 204 0 0 chrY 1051497 1051546 -50462038 - MLT2B3 LTR ERVL 0 520 472 1900 211 79 7 chrY 1051686 1052099 -50461485 - MLT2B3 LTR ERVL -39 508 77 996 161 92 23 chrY 1052197 1052260 -50461324 - Ricksha DNA DNA -838 416 339 1430 161 41 7 chrY 1052260 1052742 -50460842 - ERVL-B3 LTR ERVL 0 5764 5233 980 145 0 11 chrY 1052747 1052926 -50460658 + (TTTC)n Simple_repeat Simple_repeat 4 180 0 525 32 0 0 chrY 1052999 1053062 -50460522 + (TTCC)n Simple_repeat Simple_repeat 2 64 0 195 156 0 47 chrY 1053097 1053161 -50460423 + T-rich Low_complexity Low_complexity 4 64 0 * 534 70 0 0 chrY 1053147 1053218 -50460366 + (TTCC)n Simple_repeat Simple_repeat 2 72 0 779 101 0 23 chrY 1053290 1053419 -50460165 + (TTTCC)n Simple_repeat Simple_repeat 4 129 0 1652 193 3 31 chrY 1053419 1053781 -50459803 - AluJo SINE Alu 0 353 1 7875 175 16 5 chrY 1053781 1055113 -50458471 - ERVL-B3 LTR ERVL -522 5242 3896 338 217 0 0 chrY 1055172 1055241 -50458343 - MLT2B3 LTR ERVL -483 71 3 916 273 8 0 chrY 1055243 1055492 -50458092 - L1MDb LINE L1 -5387 1022 772 357 233 143 8 chrY 1055644 1055777 -50457807 + L1MC5 LINE L1 7751 7901 -60 1261 281 113 10 chrY 1056285 1056780 -50456804 + MLT1H LTR MaLR 1 546 -3 23 0 0 0 chrY 1056935 1056958 -50456626 + AT_rich Low_complexity Low_complexity 1 23 0 226 197 16 16 chrY 1057001 1057062 -50456522 - MLT1E2 LTR MaLR -2 624 564 975 233 79 98 chrY 1057062 1057469 -50456115 - MLT1E2 LTR MaLR -106 399 1 423 337 28 6 chrY 1057476 1057654 -50455930 - MIR SINE MIR -6 256 75 7847 208 40 19 chrY 1059908 1062005 -50451579 + L1MA9 LINE L1 2373 4514 -1632 4221 140 71 8 chrY 1062011 1062739 -50450845 - Tigger1 DNA MER2_type -1644 774 1 553 200 114 11 chrY 1062739 1062795 -50450789 + L1MDa LINE L1 1564 1613 -4927 5744 135 32 17 chrY 1062795 1063749 -50449835 + LTR5 LTR ERVK 1 969 0 553 200 114 11 chrY 1063749 1063867 -50449717 + L1MDa LINE L1 1613 1756 -4784 2953 211 21 6 chrY 1064135 1065089 -50448495 + L1MA9 LINE L1 4670 5642 -649 2981 106 31 18 chrY 1065089 1065543 -50448041 - LTR46 LTR ERV1 0 460 1 2136 124 3 3 chrY 1065543 1065850 -50447734 - LTR46-int LTR ERV1 0 6985 6679 17105 119 14 8 chrY 1066172 1068891 -50444693 - LTR46-int LTR ERV1 -312 6673 3938 * 18789 158 20 30 chrY 1068887 1071991 -50441593 - LTR46-int LTR ERV1 -3195 3790 659 3579 117 11 16 chrY 1072183 1072728 -50440856 - LTR46-int LTR ERV1 -6443 542 1 2962 99 50 14 chrY 1072728 1073172 -50440412 - LTR46 LTR ERV1 0 460 1 1005 136 0 0 chrY 1073173 1073328 -50440256 + L1MA9 LINE L1 5639 5793 -498 588 171 19 0 chrY 1073367 1073472 -50440112 - L1MA9 LINE L1 -216 6096 5990 2776 152 28 2 chrY 1073478 1073984 -50439600 + L1MA9 LINE L1 5794 6312 0 185 139 23 0 chrY 1074463 1074506 -50439078 + (TA)n Simple_repeat Simple_repeat 1 44 0 639 338 51 0 chrY 1074566 1074800 -50438784 + MIR SINE MIR 17 262 0 313 322 0 0 chrY 1074928 1075018 -50438566 - L1MC4 LINE L1 -1339 6703 6614 666 263 0 0 chrY 1075030 1075339 -50438245 + (TA)n Simple_repeat Simple_repeat 1 309 0 325 255 0 43 chrY 1075342 1075436 -50438148 - L1MC4 LINE L1 -1339 6703 6614 339 213 0 0 chrY 1075436 1075511 -50438073 + (CATATA)n Simple_repeat Simple_repeat 2 76 0 301 194 16 0 chrY 1075513 1075575 -50438009 - L1MCa LINE L1 -4358 2068 2006 381 207 0 0 chrY 1075575 1075657 -50437927 + (CATATA)n Simple_repeat Simple_repeat 3 84 0 321 280 17 34 chrY 1075660 1075778 -50437806 - L1MC4 LINE L1 -1339 6703 6588 337 237 0 43 chrY 1075784 1075877 -50437707 - L1MC4 LINE L1 -1339 6703 6615 435 141 0 0 chrY 1075880 1075958 -50437626 + (TA)n Simple_repeat Simple_repeat 2 79 0 1802 213 28 8 chrY 1075997 1076391 -50437193 - MER74A LTR ERVL -27 531 130 1086 230 77 34 chrY 1077155 1077533 -50436051 + MER110A LTR ERV1 22 415 -53 827 254 66 39 chrY 1077542 1077620 -50435964 + MER76 LTR ERV 244 318 -370 3164 192 68 0 chrY 1077620 1078239 -50435345 + MER67B LTR ERV1 1 661 0 827 254 66 39 chrY 1078239 1078576 -50435008 + MER76 LTR ERV 318 686 -2 411 299 57 16 chrY 1078644 1079069 -50434515 - L1ME LINE L1 -471 5699 5255 2029 175 23 17 chrY 1079336 1079797 -50433787 + MLT2A2 LTR ERVL 1 364 -89 211 283 67 0 chrY 1079910 1079970 -50433614 + L2 LINE L2 3205 3268 -4 385 285 81 8 chrY 1080509 1080632 -50432952 - MIR3 SINE MIR -7 201 70 1616 215 0 6 chrY 1084162 1084474 -50429110 - AluJb SINE Alu -2 310 1 1328 66 33 0 chrY 1084511 1084694 -50428890 + LTR19A LTR ERV1 1 189 -297 4371 64 9 0 chrY 1084694 1085239 -50428345 + HERVFH19I LTR ERV1 2167 2716 -5003 643 249 117 10 chrY 1085733 1085938 -50427646 + AluJo SINE Alu 84 310 -2 238 340 78 0 chrY 1086974 1087077 -50426507 + L2 LINE L2 2543 2653 -661 364 291 99 35 chrY 1087101 1087242 -50426342 + L2 LINE L2 3163 3312 -1 22 99 0 0 chrY 1087499 1087570 -50426014 + AT_rich Low_complexity Low_complexity 1 71 0 1258 188 0 9 chrY 1087744 1087967 -50425617 - AluJb SINE Alu -91 221 1 189 74 0 0 chrY 1089898 1089925 -50423659 + (TTTTA)n Simple_repeat Simple_repeat 2 28 0 3783 257 115 11 chrY 1089926 1091981 -50421603 + L1PA15-16 LINE L1 10 1630 -5220 387 0 0 0 chrY 1091981 1092024 -50421560 + (TAAA)n Simple_repeat Simple_repeat 2 44 0 4806 179 85 19 chrY 1092096 1093532 -50420052 + L1PB3 LINE L1 640 1981 -4222 1906 154 39 22 chrY 1093532 1093896 -50419688 - THE1C LTR MaLR -3 372 3 8766 144 70 8 chrY 1093898 1095385 -50418199 - THE1C-int LTR MaLR 0 1580 2 1637 198 16 26 chrY 1095386 1095765 -50417819 - THE1C LTR MaLR 0 375 1 4806 179 85 19 chrY 1095765 1096122 -50417462 + L1PB3 LINE L1 1980 2547 -3656 4415 284 91 5 chrY 1096136 1097292 -50416292 + L1PA13 LINE L1 1 1255 -5532 18245 189 44 7 chrY 1097303 1102552 -50411032 + L1PA13 LINE L1 1399 6810 -4 10718 201 32 14 chrY 1102544 1102645 -50410939 + L1PB3 LINE L1 2540 2638 -3573 * 207 100 0 0 chrY 1102645 1102675 -50410909 + (CAA)n Simple_repeat Simple_repeat 1 30 0 10718 201 32 14 chrY 1102675 1103444 -50410140 + L1PB3 LINE L1 2638 3392 -2819 2422 128 17 6 chrY 1103444 1103804 -50409780 - THE1B LTR MaLR 0 364 1 10562 114 3 34 chrY 1103805 1105434 -50408150 - THE1B-int LTR MaLR -1 1579 1 2128 137 28 28 chrY 1105434 1105798 -50407786 - THE1B LTR MaLR 0 364 1 10718 201 32 14 chrY 1105798 1108526 -50405058 + L1PB3 LINE L1 3391 6211 0 23 33 0 0 chrY 1108536 1108566 -50405018 + AT_rich Low_complexity Low_complexity 1 30 0 21 0 0 0 chrY 1109509 1109530 -50404054 + AT_rich Low_complexity Low_complexity 1 21 0 682 224 37 5 chrY 1109618 1109781 -50403803 - MER45A DNA AcHobo 0 178 1 21 36 0 0 chrY 1109820 1109848 -50403736 + AT_rich Low_complexity Low_complexity 1 28 0 2424 134 0 19 chrY 1109890 1110256 -50403328 - THE1B LTR MaLR -5 359 1 432 193 0 0 chrY 1110256 1110339 -50403245 - L1MD1 LINE L1 -79 6163 6081 2268 244 38 31 chrY 1110350 1110569 -50403015 - L1MD2 LINE L1 -226 6133 5917 1075 227 129 9 chrY 1110569 1110895 -50402689 - MLT1A1 LTR MaLR 0 365 1 2268 244 38 31 chrY 1110895 1111310 -50402274 - L1MD2 LINE L1 -442 5917 5495 198 286 61 113 chrY 1111698 1111911 -50401673 + L2 LINE L2 2538 2739 -575 217 333 105 35 chrY 1112261 1112375 -50401209 + L2 LINE L2 3143 3264 -8 22 0 0 0 chrY 1112428 1112450 -50401134 + AT_rich Low_complexity Low_complexity 1 22 0 455 320 70 31 chrY 1113813 1114169 -50399415 + L1ME LINE L1 5403 5772 -349 297 0 0 0 chrY 1115141 1115174 -50398410 + (CA)n Simple_repeat Simple_repeat 2 34 0 1482 236 64 0 chrY 1115178 1115521 -50398063 + MLT1A1 LTR MaLR 1 365 0 734 162 0 22 chrY 1116336 1116472 -50397112 - FLAM_C SINE Alu 0 133 1 25 31 0 0 chrY 1116793 1116825 -50396759 + AT_rich Low_complexity Low_complexity 1 32 0 25 31 0 0 chrY 1117095 1117127 -50396457 + AT_rich Low_complexity Low_complexity 1 32 0 445 204 7 44 chrY 1117340 1117477 -50396107 + L1MC5 LINE L1 7801 7932 -29 306 189 57 132 chrY 1117497 1117656 -50395928 + L1ME LINE L1 5176 5322 -824 311 227 55 86 chrY 1117785 1117986 -50395598 + L1ME LINE L1 5674 5884 -280 185 257 14 54 chrY 1118455 1118529 -50395055 - MER5A DNA MER1_type -86 103 33 53 40 0 0 chrY 1119019 1119093 -50394491 + AT_rich Low_complexity Low_complexity 1 74 0 186 240 0 0 chrY 1119096 1119146 -50394438 + (TATATG)n Simple_repeat Simple_repeat 4 53 0 240 233 50 0 chrY 1119147 1119207 -50394377 + L1MC4 LINE L1 6653 6715 -1327 1797 144 37 0 chrY 1119311 1119581 -50394003 + AluSx SINE Alu 1 280 -32 847 185 60 0 chrY 1119611 1119762 -50393822 + FRAM SINE Alu 1 157 -19 1635 179 103 58 chrY 1120030 1120476 -50393108 + MER31B LTR ERV1 1 466 0 424 301 7 29 chrY 1120957 1121093 -50392491 + L2 LINE L2 3178 3310 -3 4846 154 32 35 chrY 1121579 1122759 -50390825 + L1PB4 LINE L1 4975 6156 0 404 250 11 109 chrY 1123351 1123627 -50389957 - L1MC5 LINE L1 -51 7910 7662 1008 101 0 0 chrY 1124572 1124701 -50388883 - AluSq/x SINE Alu -184 129 1 2198 203 4 62 chrY 1124904 1125436 -50388148 + MLT1D LTR MaLR 3 503 -2 502 249 34 65 chrY 1127079 1127351 -50386233 - L1ME2 LINE L1 -16 6148 5887 575 237 0 0 chrY 1127370 1127467 -50386117 - MER2 DNA MER2_type -248 97 1 2078 273 82 26 chrY 1127467 1128347 -50385237 - L1ME2 LINE L1 -262 5902 5073 2130 129 0 0 chrY 1128347 1128642 -50384942 + AluSg SINE Alu 1 295 -15 2078 273 82 26 chrY 1128642 1129775 -50383809 - L1ME2 LINE L1 -1091 5073 3775 965 177 64 0 chrY 1129825 1130028 -50383556 - L1MC1 LINE L1 -5 6328 6113 1163 235 40 87 chrY 1130226 1130596 -50382988 + LTR49-int LTR ERV1 2068 2420 -3911 3686 192 8 39 chrY 1130604 1131340 -50382244 - MER50 LTR ERV1 -21 713 1 6466 171 15 13 chrY 1131340 1132484 -50381100 - MER50-int LTR ERV1 -8 7197 3899 288 315 0 9 chrY 1133501 1133612 -50379972 - MER50-int LTR ERV1 -2489 6430 6321 18978 245 50 51 chrY 1133783 1140123 -50373461 - MER50-int LTR ERV1 -933 6158 1 1950 185 0 22 chrY 1140125 1140487 -50373097 - MER50 LTR ERV1 -24 710 357 403 105 0 0 chrY 1140487 1140544 -50373040 + AluSp/q SINE Alu 181 237 -76 1406 81 34 64 chrY 1140545 1140885 -50372699 + MER4A-int LTR ERV1 764 1149 -5609 372 119 0 0 chrY 1140885 1140944 -50372640 + (TG)n Simple_repeat Simple_repeat 2 60 0 4110 104 48 13 chrY 1140955 1141665 -50371919 + MER4A-int LTR ERV1 1761 2495 -4103 540 183 122 0 chrY 1141665 1141780 -50371804 - LTR8 LTR ERV1 -434 257 129 2946 125 79 21 chrY 1141780 1142485 -50371099 + MER4A-int LTR ERV1 2840 3677 -2921 14804 117 51 10 chrY 1142488 1144977 -50368607 + MER4A-int LTR ERV1 3837 6428 -170 2215 115 7 0 chrY 1145260 1145564 -50368020 - AluSq SINE Alu -2 311 6 1066 160 11 5 chrY 1147127 1147315 -50366269 + MER4A-int LTR ERV1 6405 6593 -5 480 177 21 10 chrY 1147326 1147422 -50366162 + MER4A LTR ERV1 1 97 -567 * 1593 176 3 27 chrY 1147419 1147777 -50365807 + MER4A LTR ERV1 257 664 0 896 212 42 19 chrY 1147777 1148109 -50365475 - L1M1 LINE L1 -2704 4861 2678 1087 298 42 27 chrY 1148177 1148796 -50364788 - L1MEc LINE L1 -3151 3064 2431 2073 128 3 0 chrY 1148796 1149086 -50364498 - AluY SINE Alu -20 291 1 1087 298 42 27 chrY 1149086 1149204 -50364380 - L1MEc LINE L1 -3784 2431 2316 396 265 106 41 chrY 1149227 1149472 -50364112 - L1MEc LINE L1 -4081 2315 2055 794 292 95 23 chrY 1149473 1150083 -50363501 - L1MEc LINE L1 -4358 2038 1385 502 285 55 80 chrY 1150280 1150592 -50362992 - L1MEc LINE L1 -5090 1115 812 303 365 42 23 chrY 1150888 1151102 -50362482 - MIR SINE MIR -11 251 34 22 0 0 0 chrY 1151726 1151748 -50361836 + AT_rich Low_complexity Low_complexity 1 22 0 21 0 0 0 chrY 1152895 1152916 -50360668 + AT_rich Low_complexity Low_complexity 1 21 0 646 293 106 24 chrY 1152972 1153518 -50360066 + HAL1 LINE L1 659 1249 -1258 3441 154 41 0 chrY 1153655 1154241 -50359343 - MER4B LTR ERV1 0 610 1 1618 160 15 15 chrY 1154241 1154509 -50359075 - MER4B-int LTR ERV1 0 6758 6491 * 6860 151 31 67 chrY 1154501 1156011 -50357573 - MER4B-int LTR ERV1 -181 6577 5122 3789 189 12 34 chrY 1156011 1156755 -50356829 - MER50 LTR ERV1 -6 728 1 1681 142 11 36 chrY 1156755 1157234 -50356350 - MER50-int LTR ERV1 -8 7197 4041 625 137 0 0 chrY 1157245 1157340 -50356244 - MER50-int LTR ERV1 -3212 3546 3452 7205 167 43 51 chrY 1157347 1158265 -50355319 - MER50-int LTR ERV1 -3431 3327 2403 2236 112 0 0 chrY 1158265 1158559 -50355025 + AluY SINE Alu 1 294 -17 7205 167 43 51 chrY 1158559 1158639 -50354945 - MER50-int LTR ERV1 -4355 2403 2324 2202 120 0 0 chrY 1158639 1158940 -50354644 - AluSg SINE Alu -9 301 1 7205 167 43 51 chrY 1158940 1159464 -50354120 - MER50-int LTR ERV1 -4434 2324 1797 2168 124 0 3 chrY 1159464 1159770 -50353814 - AluSg SINE Alu -5 305 1 7205 167 43 51 chrY 1159770 1161314 -50352270 - MER50-int LTR ERV1 -4961 1797 180 3305 146 48 2 chrY 1161402 1161943 -50351641 - MER4B LTR ERV1 0 610 45 686 118 10 232 chrY 1161943 1162150 -50351434 - MLT2A2 LTR ERVL 0 444 287 747 307 154 44 chrY 1162211 1162853 -50350731 + HAL1 LINE L1 1792 2504 -3 502 279 92 85 chrY 1163441 1163724 -50349860 + L2 LINE L2 3029 3313 0 184 264 75 0 chrY 1163789 1163842 -50349742 + MIR SINE MIR 85 141 -121 1564 223 76 49 chrY 1164230 1164455 -50349129 + MLT1D LTR MaLR 4 222 -283 186 71 0 0 chrY 1164455 1164483 -50349101 + (CAAA)n Simple_repeat Simple_repeat 2 29 0 1564 223 76 49 chrY 1164483 1164746 -50348838 + MLT1D LTR MaLR 222 505 0 25 0 0 0 chrY 1165121 1165146 -50348438 + AT_rich Low_complexity Low_complexity 1 25 0 202 388 72 26 chrY 1165382 1165771 -50347813 - L2 LINE L2 -642 2672 2266 1656 178 165 8 chrY 1165928 1166298 -50347286 - MSTA LTR MaLR 0 428 1 8414 161 8 56 chrY 1166298 1167233 -50346351 - MSTA-int LTR MaLR 0 1580 755 2711 29 0 3 chrY 1167233 1167545 -50346039 + AluY SINE Alu 1 311 0 8414 161 8 56 chrY 1167545 1168265 -50345319 - MSTA-int LTR MaLR -825 755 3 1789 168 146 8 chrY 1168268 1168644 -50344940 - MSTA LTR MaLR 0 428 1 1331 288 65 17 chrY 1168644 1169124 -50344460 - LTR40a LTR ERVL -16 503 1 879 278 70 23 chrY 1169289 1169656 -50343928 - L1ME LINE L1 -519 5643 5182 33 25 0 0 chrY 1169656 1169696 -50343888 + AT_rich Low_complexity Low_complexity 1 40 0 879 278 70 23 chrY 1169696 1169929 -50343655 - L1ME LINE L1 -980 5182 4961 1544 292 69 51 chrY 1170071 1171791 -50341793 - L1ME LINE L1 -1987 4159 2409 1308 266 58 76 chrY 1171795 1172517 -50341067 + L1ME3A LINE L1 5462 6170 0 26 0 0 0 chrY 1172951 1172977 -50340607 + AT_rich Low_complexity Low_complexity 1 26 0 3178 141 41 23 chrY 1173072 1173634 -50339950 + MER4B LTR ERV1 3 574 -36 22 70 0 0 chrY 1174244 1174287 -50339297 + AT_rich Low_complexity Low_complexity 1 43 0 250 381 15 8 chrY 1174350 1174484 -50339100 - MIR SINE MIR -47 215 81 2458 138 58 22 chrY 1174719 1175168 -50338416 - MER4C LTR ERV1 0 465 1 2411 75 0 3 chrY 1175479 1175787 -50337797 + AluY SINE Alu 1 307 -4 31 76 0 0 chrY 1175940 1176006 -50337578 + AT_rich Low_complexity Low_complexity 1 66 0 23 33 0 0 chrY 1176477 1176507 -50337077 + AT_rich Low_complexity Low_complexity 1 30 0 22 0 0 0 chrY 1176750 1176772 -50336812 + AT_rich Low_complexity Low_complexity 1 22 0 31 0 0 0 chrY 1177240 1177271 -50336313 + AT_rich Low_complexity Low_complexity 1 31 0 23 54 0 0 chrY 1177421 1177458 -50336126 + AT_rich Low_complexity Low_complexity 1 37 0 1458 277 123 11 chrY 1177670 1178233 -50335351 - MLT1E2 LTR MaLR 0 626 1 1877 171 3 0 chrY 1178665 1178974 -50334610 + AluSx SINE Alu 1 310 -2 1363 235 17 32 chrY 1179344 1179493 -50334091 + L1MB3 LINE L1 3392 3542 -2604 2014 152 91 15 chrY 1179493 1179889 -50333695 - MSTA LTR MaLR 0 428 3 7950 163 34 42 chrY 1179891 1180971 -50332613 - MSTA-int LTR MaLR 0 1580 516 213 39 0 0 chrY 1180971 1180997 -50332587 + (TTTTC)n Simple_repeat Simple_repeat 5 30 0 7950 163 34 42 chrY 1180997 1181507 -50332077 - MSTA-int LTR MaLR -1064 516 3 1812 149 79 82 chrY 1181509 1181747 -50331837 - MSTA LTR MaLR 0 428 190 2129 101 50 3 chrY 1181747 1182044 -50331540 - AluY SINE Alu 0 311 1 1812 149 79 82 chrY 1182044 1182234 -50331350 - MSTA LTR MaLR -238 190 1 1363 235 17 32 chrY 1182234 1182542 -50331042 + L1MB3 LINE L1 3544 3848 -2298 8487 216 15 2 chrY 1182552 1184108 -50329476 + L1PA13 LINE L1 9 1585 -5996 3616 210 15 17 chrY 1184111 1185248 -50328336 + L1PA13 LINE L1 2405 3560 -4024 * 9882 174 18 25 chrY 1185236 1188204 -50325380 + L1PA13 LINE L1 4648 7595 -6 4135 230 52 30 chrY 1188230 1188448 -50325136 + L1MB3 LINE L1 3876 4088 -2095 1718 225 10 20 chrY 1188448 1188848 -50324736 - MSTD LTR MaLR 0 396 1 4135 230 52 30 chrY 1188848 1189040 -50324544 + L1MB3 LINE L1 4088 4274 -1909 234 0 0 0 chrY 1189040 1189066 -50324518 + (CA)n Simple_repeat Simple_repeat 2 27 0 4135 230 52 30 chrY 1189066 1190030 -50323554 + L1MB3 LINE L1 4274 5216 -967 1073 248 39 19 chrY 1190030 1190393 -50323191 - MLT1A2 LTR MaLR -4 370 1 4135 230 52 30 chrY 1190393 1191289 -50322295 + L1MB3 LINE L1 5216 6183 0 180 329 13 13 chrY 1192397 1192473 -50321111 + MIR SINE MIR 187 262 0 572 383 82 21 chrY 1192926 1193755 -50319829 - L2 LINE L2 -213 3059 2180 394 299 57 53 chrY 1193853 1194154 -50319430 + L1M4 LINE L1 3684 3985 -2161 614 213 164 7 chrY 1194186 1194393 -50319191 - MER66A LTR ERV1 -257 341 97 1512 179 51 0 chrY 1194461 1194734 -50318850 - MER66A-int LTR ERV1 0 6676 6390 324 172 16 0 chrY 1194723 1194787 -50318797 - MER66A-int LTR ERV1 -1735 4941 4877 * 7545 196 107 86 chrY 1194789 1197307 -50316277 - MER66A-int LTR ERV1 -1758 4918 2348 13155 143 16 11 chrY 1197337 1200427 -50313157 - L1PA10 LINE L1 -3 6165 3044 10099 193 49 29 chrY 1200449 1202567 -50311017 - MER66A-int LTR ERV1 -4516 2160 1 1334 202 48 94 chrY 1202567 1203001 -50310583 - MER66A LTR ERV1 0 478 97 360 287 33 16 chrY 1203103 1203225 -50310359 + L1MC4 LINE L1 6580 6703 -1339 216 278 0 14 chrY 1203225 1203261 -50310323 + (TA)n Simple_repeat Simple_repeat 1 36 -35 1249 209 62 38 chrY 1203261 1203600 -50309984 + MER7A DNA MER2_type 1 345 -1 216 278 0 14 chrY 1203600 1203635 -50309949 + (TA)n Simple_repeat Simple_repeat 36 71 0 1179 176 0 39 chrY 1203715 1203948 -50309636 + Tigger5 DNA MER2_type 2085 2308 -15 192 40 0 0 chrY 1203959 1203984 -50309600 + (TC)n Simple_repeat Simple_repeat 2 26 0 247 276 0 0 chrY 1203985 1204043 -50309541 + (TATG)n Simple_repeat Simple_repeat 3 60 0 1951 119 0 17 chrY 1204291 1204629 -50308955 + AluY SINE Alu 1 311 0 29 0 0 0 chrY 1204667 1204696 -50308888 + AT_rich Low_complexity Low_complexity 1 29 0 24 0 0 0 chrY 1204925 1204949 -50308635 + AT_rich Low_complexity Low_complexity 1 24 0 651 259 95 69 chrY 1205057 1205751 -50307833 + L1MC/D LINE L1 3997 4708 -1438 459 215 117 78 chrY 1205795 1206000 -50307584 - L2 LINE L2 0 3313 3101 321 245 1 95 chrY 1206336 1206459 -50307125 + L1MC/D LINE L1 5476 5589 -540 591 211 37 0 chrY 1206639 1206748 -50306836 - FLAM_A SINE Alu -18 115 3 2827 297 128 38 chrY 1206933 1208484 -50305100 + L2 LINE L2 1171 2861 -453 529 290 26 59 chrY 1208543 1208815 -50304769 + L2 LINE L2 3051 3313 0 3464 215 96 17 chrY 1209960 1210320 -50303264 - L1MB7 LINE L1 -8 6176 5846 1788 198 40 0 chrY 1210320 1210669 -50302915 + MLT1A1 LTR MaLR 1 363 -2 3464 215 96 17 chrY 1210669 1211389 -50302195 - L1MB7 LINE L1 -338 5846 5028 435 19 0 0 chrY 1212397 1212449 -50301135 + (CA)n Simple_repeat Simple_repeat 1 52 0 378 315 129 18 chrY 1212871 1213211 -50300373 - L1ME4a LINE L1 -14 6107 5730 21 57 0 0 chrY 1213979 1214014 -50299570 + AT_rich Low_complexity Low_complexity 1 35 0 2201 90 0 0 chrY 1216321 1216609 -50296975 - AluY SINE Alu -23 288 1 1362 207 82 4 chrY 1216658 1216938 -50296646 + AluJb SINE Alu 1 302 -10 30 27 0 0 chrY 1216938 1216975 -50296609 + AT_rich Low_complexity Low_complexity 1 37 0 615 12 0 0 chrY 1217003 1217083 -50296501 + AluYa5/8 SINE Alu 231 310 -1 22 56 0 0 chrY 1218437 1218473 -50295111 + AT_rich Low_complexity Low_complexity 1 36 0 1590 261 76 32 chrY 1218774 1219342 -50294242 + MLT1E LTR MaLR 1 593 0 13964 159 23 42 chrY 1219498 1219702 -50293882 - L1PA13 LINE L1 0 6163 5957 2072 128 0 0 chrY 1219702 1219991 -50293593 - AluSg SINE Alu -21 289 1 13964 159 23 42 chrY 1219991 1221459 -50292125 - L1PA13 LINE L1 -206 5957 4463 2534 33 13 0 chrY 1221459 1221761 -50291823 - AluY SINE Alu 0 311 6 13964 159 23 42 chrY 1221761 1221855 -50291729 - L1PA13 LINE L1 -1700 4463 4369 2296 96 0 6 chrY 1221855 1222167 -50291417 - AluSx SINE Alu -2 310 1 13964 159 23 42 chrY 1222167 1223442 -50290142 - L1PA13 LINE L1 -1794 4369 3072 1832 180 0 0 chrY 1223442 1223753 -50289831 - AluSx SINE Alu -1 311 1 13964 159 23 42 chrY 1223753 1223773 -50289811 - L1PA13 LINE L1 -3091 3072 3053 1773 182 3 0 chrY 1223773 1224081 -50289503 - AluSx SINE Alu -3 309 1 13964 159 23 42 chrY 1224081 1224918 -50288666 - L1PA13 LINE L1 -3110 3053 2341 195 114 0 0 chrY 1225022 1225057 -50288527 + (A)n Simple_repeat Simple_repeat 1 35 0 774 297 36 5 chrY 1225881 1226103 -50287481 + MER69 DNA AcHobo 304 532 -694 449 200 30 20 chrY 1226109 1226209 -50287375 + MER69 DNA AcHobo 801 901 -1625 1382 207 121 12 chrY 1226219 1226716 -50286868 + MER69 DNA AcHobo 1708 2258 -268 4807 181 16 12 chrY 1226765 1227195 -50286389 - L1PA16 LINE L1 -8 6158 5731 5869 61 30 13 chrY 1227195 1227962 -50285622 - LTR17 LTR ERV1 0 780 1 4807 181 16 12 chrY 1227962 1228490 -50285094 - L1PA16 LINE L1 -435 5731 5199 421 217 19 83 chrY 1228490 1228647 -50284937 + MER69 DNA AcHobo 2371 2517 -9 194 366 78 35 chrY 1228668 1228810 -50284774 + MIR3 SINE MIR 33 180 -28 2192 188 49 79 chrY 1228816 1229472 -50284112 + MER92B LTR ERV1 1 636 0 395 289 157 38 chrY 1230849 1231008 -50282576 + MER5A DNA MER1_type 11 188 -1 1049 302 132 21 chrY 1231125 1231307 -50282277 - L2 LINE L2 -4 3309 3149 1549 219 7 47 chrY 1231307 1231713 -50281871 + MLT1B LTR MaLR 1 390 0 1049 302 132 21 chrY 1231713 1232142 -50281442 - L2 LINE L2 -164 3149 2621 472 110 14 0 chrY 1232288 1232361 -50281223 - MADE1 DNA Mariner -1 79 6 310 274 176 19 chrY 1232381 1232911 -50280673 - L1M4 LINE L1 -901 5245 4633 2356 84 0 7 chrY 1232913 1233223 -50280361 + AluY SINE Alu 1 308 -3 1609 142 76 44 chrY 1233273 1233617 -50279967 - THE1C LTR MaLR -20 355 1 345 304 104 55 chrY 1233912 1234113 -50279471 - MIR SINE MIR -3 259 49 21 36 0 0 chrY 1234222 1234250 -50279334 + AT_rich Low_complexity Low_complexity 1 28 0 468 0 0 0 chrY 1235284 1235336 -50278248 + (TA)n Simple_repeat Simple_repeat 2 53 0 1442 238 85 25 chrY 1235383 1235826 -50277758 - MLT2B1 LTR ERVL -40 461 4 16474 190 32 20 chrY 1235833 1239038 -50274546 - ERVL-B1 LTR ERVL -11 5753 2510 953 238 32 69 chrY 1239042 1239319 -50274265 - MLT2B1 LTR ERVL -253 267 1 408 273 187 16 chrY 1239515 1239702 -50273882 - MIR SINE MIR -5 257 39 315 248 134 13 chrY 1240315 1240464 -50273120 - MER58C DNA MER1_type -1 214 48 25 75 0 0 chrY 1240887 1240940 -50272644 + AT_rich Low_complexity Low_complexity 1 53 0 671 119 0 0 chrY 1241059 1241160 -50272424 - LTR12 LTR ERV1 -133 581 481 378 224 42 0 chrY 1241161 1241267 -50272317 - LTR30 LTR ERV1 -79 677 544 660 218 8 77 chrY 1241267 1241501 -50272083 - LTR12 LTR ERV1 -444 270 53 235 269 0 0 chrY 1241501 1241553 -50272031 - LTR30 LTR ERV1 -670 52 1 22 56 0 0 chrY 1242115 1242151 -50271433 + AT_rich Low_complexity Low_complexity 1 36 0 200 238 0 0 chrY 1242180 1242222 -50271362 + (TAA)n Simple_repeat Simple_repeat 2 43 0 243 252 129 49 chrY 1242222 1242508 -50271076 + L1M4 LINE L1 2207 2515 -3631 335 342 97 51 chrY 1242591 1242828 -50270756 + L1M4 LINE L1 -260 4294967283 -6293 262 149 21 0 chrY 1243177 1243224 -50270360 + L1M4 LINE L1 619 666 -5718 2567 234 68 40 chrY 1243225 1243385 -50270199 + L1M4 LINE L1 777 931 -5372 198 0 0 0 chrY 1243385 1243407 -50270177 + (CAAA)n Simple_repeat Simple_repeat 2 23 0 2567 234 68 40 chrY 1243407 1244202 -50269382 + L1M4 LINE L1 931 1786 -4517 1208 256 36 31 chrY 1244202 1244555 -50269029 - MSTD LTR MaLR 0 396 44 405 0 0 0 chrY 1244555 1244600 -50268984 + (CA)n Simple_repeat Simple_repeat 2 46 0 1208 256 36 31 chrY 1244600 1244613 -50268971 - MSTD LTR MaLR -352 44 33 4830 208 44 12 chrY 1244613 1245682 -50267902 + L1MC3 LINE L1 6573 7675 -110 2062 115 0 26 chrY 1245686 1245990 -50267594 + AluSg SINE Alu 1 296 -14 205 184 0 0 chrY 1246354 1246392 -50267192 + (CATA)n Simple_repeat Simple_repeat 2 39 0 24 53 0 0 chrY 1246608 1246646 -50266938 + AT_rich Low_complexity Low_complexity 1 38 0 704 108 0 0 chrY 1246653 1246755 -50266829 - LTR12 LTR ERV1 -132 582 481 310 293 10 0 chrY 1246756 1246855 -50266729 - LTR30 LTR ERV1 -79 643 544 649 168 153 31 chrY 1246858 1247054 -50266530 - LTR12 LTR ERV1 -440 274 55 960 148 6 22 chrY 1247055 1247237 -50266347 - LTR12 LTR ERV1 -483 231 53 232 250 0 0 chrY 1247237 1247289 -50266295 - LTR30 LTR ERV1 -670 52 1 192 77 0 0 chrY 1249014 1249040 -50264544 + (TTTC)n Simple_repeat Simple_repeat 3 28 0 21 57 0 0 chrY 1249264 1249299 -50264285 + AT_rich Low_complexity Low_complexity 1 35 0 543 241 103 0 chrY 1249341 1249486 -50264098 - MLT1A1 LTR MaLR 0 624 465 2198 86 3 16 chrY 1249770 1250074 -50263510 + AluY SINE Alu 12 311 0 1039 156 28 104 chrY 1250074 1250324 -50263260 - LOR1b LTR ERV1 -203 258 41 32 43 0 0 chrY 1250656 1250702 -50262882 + AT_rich Low_complexity Low_complexity 1 46 0 224 283 0 0 chrY 1250871 1250924 -50262660 - MIR SINE MIR -187 75 23 2179 113 3 6 chrY 1250924 1251235 -50262349 - AluSg SINE Alu 0 310 1 1586 202 35 11 chrY 1251331 1251678 -50261906 - MLT1A1 LTR MaLR -10 355 1 1837 109 0 0 chrY 1251997 1252245 -50261339 - AluSc SINE Alu -23 286 39 1340 291 85 6 chrY 1252764 1253234 -50260350 + L2 LINE L2 1780 2286 -1028 262 355 57 28 chrY 1253233 1253374 -50260210 + L2 LINE L2 3168 3312 -1 * 696 211 75 12 chrY 1254436 1254597 -50258987 + MER5B DNA MER1_type 2 172 -6 325 256 33 11 chrY 1254992 1255082 -50258502 + MER5A DNA MER1_type 96 187 -2 1802 207 56 25 chrY 1255159 1255603 -50257981 + LOR1b LTR ERV1 1 458 -3 21 36 0 0 chrY 1256066 1256094 -50257490 + AT_rich Low_complexity Low_complexity 1 28 0 21 0 0 0 chrY 1256220 1256241 -50257343 + AT_rich Low_complexity Low_complexity 1 21 0 313 321 38 46 chrY 1256250 1256490 -50257094 - L1MC/D LINE L1 -2019 5789 5552 1781 324 62 15 chrY 1256636 1257414 -50256170 - ERVL LTR ERVL -1533 4231 3418 622 331 65 20 chrY 1257783 1258031 -50255553 - LTR33 LTR ERVL -237 284 26 329 204 49 21 chrY 1258046 1258188 -50255396 + (TA)n Simple_repeat Simple_repeat 1 146 0 263 311 54 56 chrY 1258214 1258805 -50254779 - L1MC/D LINE L1 -1449 4697 4108 1303 219 50 14 chrY 1258935 1259213 -50254371 + AluJo SINE Alu 1 288 -24 2268 262 16 8 chrY 1259595 1260305 -50253279 - L1MC/D LINE L1 -2400 3746 3032 432 338 76 60 chrY 1260368 1261146 -50252438 + L1M4 LINE L1 3604 4393 -1753 10302 175 18 65 chrY 1261158 1263236 -50250348 + L1PA15-16 LINE L1 5 1986 -4863 262 100 0 0 chrY 1263321 1263361 -50250223 - L1PA7 LINE L1 -5 6149 6110 7068 229 29 29 chrY 1263463 1266024 -50247560 - L1MA9 LINE L1 -372 5940 3393 221 252 0 8 chrY 1266047 1266178 -50247406 + (TA)n Simple_repeat Simple_repeat 2 131 0 280 314 21 0 chrY 1266204 1266344 -50247240 + (TA)n Simple_repeat Simple_repeat 1 143 0 495 252 125 22 chrY 1266350 1266719 -50246865 - L1MC/D LINE L1 -3506 2640 2234 255 103 0 0 chrY 1266765 1266804 -50246780 + (CA)n Simple_repeat Simple_repeat 2 40 0 1162 229 41 25 chrY 1266808 1267122 -50246462 - L1MD1 LINE L1 -152 6090 5772 13171 185 43 28 chrY 1267130 1273976 -50239608 - L1M1 LINE L1 -743 6822 17 263 350 36 29 chrY 1274207 1274347 -50239237 + L2 LINE L2 3101 3241 -31 22 35 0 0 chrY 1275098 1275127 -50238457 + AT_rich Low_complexity Low_complexity 1 29 0 2210 96 0 39 chrY 1275275 1275587 -50237997 + AluY SINE Alu 1 300 -11 1971 134 0 10 chrY 1275640 1275930 -50237654 + AluSx SINE Alu 1 287 -25 1547 209 0 20 chrY 1276046 1276347 -50237237 + AluJo SINE Alu 1 295 -17 1657 171 0 4 chrY 1276689 1276964 -50236620 - L1PB3 LINE L1 -2 6152 5879 2013 205 24 7 chrY 1276965 1277380 -50236204 - MER50 LTR ERV1 -23 711 290 1463 138 5 9 chrY 1277380 1277604 -50235980 - MER4A LTR ERV1 0 664 442 10181 123 43 23 chrY 1277604 1279448 -50234136 - MER4A-int LTR ERV1 -874 5724 3844 30348 107 9 25 chrY 1279448 1285231 -50228353 + L1PA7 LINE L1 1 5775 -701 2314 88 0 3 chrY 1285231 1285536 -50228048 + AluSc SINE Alu 4 307 -2 30348 107 9 25 chrY 1285536 1286228 -50227356 + L1PA7 LINE L1 5775 6476 0 1479 169 45 34 chrY 1286238 1286617 -50226967 - MER4A-int LTR ERV1 -2912 3686 3304 1704 144 70 3 chrY 1286645 1287033 -50226551 - MER4A-int LTR ERV1 -3448 3150 2737 1157 208 5 0 chrY 1287033 1287249 -50226335 + LTR8 LTR ERV1 1 217 -474 11314 122 117 46 chrY 1287255 1289591 -50223993 - MER4A-int LTR ERV1 -4095 2503 1 1860 121 6 22 chrY 1289605 1289945 -50223639 - MER4A LTR ERV1 -11 653 261 654 121 0 10 chrY 1289945 1290044 -50223540 - MER4A LTR ERV1 -566 98 1 1568 171 29 0 chrY 1290045 1290325 -50223259 - MER50 LTR ERV1 -446 288 1 1449 121 8 15 chrY 1290325 1290590 -50222994 - MER50-int LTR ERV1 -8 7197 6849 6918 116 29 38 chrY 1290590 1291741 -50221843 - MER50-int LTR ERV1 -1007 6198 5059 330 115 37 7 chrY 1291731 1291799 -50221785 - MER50-int LTR ERV1 -1499 4962 4381 * 1786 139 17 10 chrY 1291799 1292094 -50221490 + THE1A LTR MaLR 1 297 -58 1719 97 0 0 chrY 1292100 1292337 -50221247 + THE1A-int LTR MaLR 206 442 -1138 8057 213 38 18 chrY 1292343 1294114 -50219470 - MER50-int LTR ERV1 -2612 4593 2788 3831 156 32 47 chrY 1294118 1294251 -50219333 - MER50-int LTR ERV1 -5365 1840 1707 2059 102 11 7 chrY 1294251 1294561 -50219023 + AluSp SINE Alu 1 311 0 3831 156 32 47 chrY 1294561 1295152 -50218432 - MER50-int LTR ERV1 -5498 1707 1126 3075 179 20 6 chrY 1295174 1296086 -50217498 - MER50-int LTR ERV1 -6217 988 1 3646 170 33 35 chrY 1296086 1296822 -50216762 - MER50 LTR ERV1 0 734 1 383 167 0 0 chrY 1296822 1296882 -50216702 - L1PB3 LINE L1 -277 5877 5818 22 0 0 0 chrY 1297054 1297076 -50216508 + AT_rich Low_complexity Low_complexity 1 22 0 21 71 0 0 chrY 1297216 1297258 -50216326 + AT_rich Low_complexity Low_complexity 1 42 0 1352 123 44 0 chrY 1297479 1297682 -50215902 + MER30 DNA MER1_type 1 212 -18 1091 220 5 59 chrY 1298234 1298608 -50214976 - MER31B LTR ERV1 0 466 1 224 271 0 0 chrY 1300487 1300535 -50213049 + L2 LINE L2 3213 3260 -12 222 113 0 57 chrY 1301272 1301325 -50212259 + (TAAAA)n Simple_repeat Simple_repeat 1 50 0 494 116 0 0 chrY 1301341 1301410 -50212174 - AluS SINE Alu -15 294 226 1521 180 27 9 chrY 1301438 1301876 -50211708 - LTR27 LTR ERV1 0 501 91 444 207 0 0 chrY 1301847 1301929 -50211655 - LTR28 LTR ERV1 -938 82 1 * 25 65 0 0 chrY 1302136 1302182 -50211402 + AT_rich Low_complexity Low_complexity 1 46 0 492 114 81 0 chrY 1302400 1302549 -50211035 + (TA)n Simple_repeat Simple_repeat 1 161 0 230 137 77 18 chrY 1302591 1302759 -50210825 + (TA)n Simple_repeat Simple_repeat 1 178 0 2214 236 69 20 chrY 1302954 1303559 -50210025 - MER99 DNA DNA -2 826 192 39 92 0 0 chrY 1303902 1304011 -50209573 + AT_rich Low_complexity Low_complexity 1 109 0 371 284 63 0 chrY 1304244 1304339 -50209245 - MER99 DNA DNA -727 101 1 374 289 47 23 chrY 1304529 1304657 -50208927 - MIR SINE MIR -10 252 122 660 298 18 11 chrY 1305935 1306217 -50207367 - L1ME3A LINE L1 -219 5951 5668 1690 192 28 43 chrY 1306491 1306921 -50206663 + MLT2D LTR ERVL 10 464 0 1095 296 82 60 chrY 1307029 1307790 -50205794 - L1ME3A LINE L1 -905 5241 4498 1993 95 21 7 chrY 1307790 1308107 -50205477 + AluY SINE Alu 1 311 0 1095 296 82 60 chrY 1308107 1308341 -50205243 - L1ME3A LINE L1 -1648 4498 4271 1749 199 3 0 chrY 1308341 1308643 -50204941 + AluJb SINE Alu 1 303 -9 1095 296 82 60 chrY 1308643 1308687 -50204897 - L1ME3A LINE L1 -1875 4271 4229 2372 86 0 0 chrY 1308687 1308991 -50204593 + AluSq SINE Alu 1 304 -9 1095 296 82 60 chrY 1308991 1309264 -50204320 - L1ME3A LINE L1 -1917 4229 3898 40 72 0 18 chrY 1309277 1309346 -50204238 + AT_rich Low_complexity Low_complexity 1 69 -40 1336 186 93 11 chrY 1309346 1309615 -50203969 + AluJb SINE Alu 1 291 -21 40 72 0 18 chrY 1309615 1309656 -50203928 + AT_rich Low_complexity Low_complexity 69 109 0 674 269 5 46 chrY 1309974 1310190 -50203394 - MLT1E1 LTR MaLR 0 654 448 2296 153 135 41 chrY 1310253 1310770 -50202814 + LTR49 LTR ERV1 1 566 -29 1206 234 116 54 chrY 1310867 1311559 -50202025 - MER61E LTR ERV1 -2 777 1 432 153 266 16 chrY 1311559 1311683 -50201901 - MER4C LTR ERV1 -20 445 291 1429 170 50 50 chrY 1311835 1312177 -50201407 - MER4A LTR ERV1 -322 342 1 2271 175 70 52 chrY 1312340 1312825 -50200759 + LTR26B LTR ERV1 1 494 -37 1897 160 16 0 chrY 1313112 1313419 -50200165 - AluSx SINE Alu 0 312 1 647 118 0 11 chrY 1313521 1313611 -50199973 - LTR35 LTR ERV1 0 618 530 301 192 0 0 chrY 1313611 1313663 -50199921 - MLT2B3 LTR ERVL 0 453 402 249 177 32 0 chrY 1313670 1313732 -50199852 + (TA)n Simple_repeat Simple_repeat 1 64 0 233 269 21 11 chrY 1313732 1313825 -50199759 + L1MC4 LINE L1 6610 6703 -1339 306 303 22 0 chrY 1313844 1313933 -50199651 + L1MC4 LINE L1 6615 6705 -1337 * 309 318 0 0 chrY 1313875 1313963 -50199621 - L1MC4 LINE L1 -1341 6701 6614 304 247 0 62 chrY 1313974 1314071 -50199513 + L1MC4 LINE L1 6613 6703 -1339 487 132 46 7 chrY 1314071 1314223 -50199361 + (TA)n Simple_repeat Simple_repeat 2 159 0 460 139 7 51 chrY 1314225 1314362 -50199222 + (TATAA)n Simple_repeat Simple_repeat 4 134 0 274 112 28 78 chrY 1314367 1314546 -50199038 + (TTATA)n Simple_repeat Simple_repeat 5 174 0 * 557 84 78 0 chrY 1314541 1314708 -50198876 + (TA)n Simple_repeat Simple_repeat 1 180 0 353 140 28 34 chrY 1314690 1314869 -50198715 + (TATAA)n Simple_repeat Simple_repeat 1 178 0 * 340 136 53 18 chrY 1314849 1315018 -50198566 + (TTATA)n Simple_repeat Simple_repeat 5 179 0 * 368 123 59 17 chrY 1315021 1315264 -50198320 + (TA)n Simple_repeat Simple_repeat 1 253 0 1982 229 20 34 chrY 1315313 1315841 -50197743 - MLT2B3 LTR ERVL -44 508 1 361 159 16 0 chrY 1315841 1315904 -50197680 - LTR35 LTR ERV1 -84 534 471 370 227 83 41 chrY 1315926 1316098 -50197486 - LTR43 LTR ERV1 -163 516 184 2355 154 127 59 chrY 1316141 1316699 -50196885 - LTR4 LTR ERV1 0 596 1 785 189 123 18 chrY 1316799 1317027 -50196557 - PABL_B LTR ERV1 0 667 416 247 304 54 48 chrY 1317071 1317239 -50196345 - PABL_B LTR ERV1 -498 169 1 257 316 55 70 chrY 1317451 1317637 -50195947 + MIR SINE MIR 18 206 -56 22 35 0 0 chrY 1317803 1317832 -50195752 + AT_rich Low_complexity Low_complexity 1 29 0 599 288 110 21 chrY 1317988 1318224 -50195360 + MIR SINE MIR 3 259 -3 427 308 108 23 chrY 1318665 1318879 -50194705 + MIR SINE MIR 31 262 0 374 320 14 20 chrY 1318905 1319052 -50194532 + MLT1L LTR MaLR 434 579 -36 324 333 8 0 chrY 1319145 1319262 -50194322 - L1MC4a LINE L1 -1922 5886 5769 828 271 20 10 chrY 1319263 1319466 -50194118 - MLT1E1 LTR MaLR 0 654 450 283 259 48 24 chrY 1319578 1319744 -50193840 - L1ME4a LINE L1 -68 6053 5884 1456 186 25 179 chrY 1319849 1320375 -50193209 - MER21A LTR ERV1 -486 445 1 2201 214 65 34 chrY 1320375 1320787 -50192797 - L1MB7 LINE L1 -281 6401 6003 198 71 0 0 chrY 1320787 1320815 -50192769 + (TTA)n Simple_repeat Simple_repeat 2 29 0 2201 214 65 34 chrY 1320815 1321141 -50192443 - L1MB7 LINE L1 -679 6003 5639 2447 60 0 28 chrY 1321141 1321459 -50192125 + AluY SINE Alu 1 309 -2 2201 214 65 34 chrY 1321459 1321637 -50191947 - L1MB7 LINE L1 -1043 5639 5468 2705 266 69 8 chrY 1321643 1322704 -50190880 - L1MB7 LINE L1 -1225 5419 4295 3789 156 65 9 chrY 1322713 1323385 -50190199 - MER50 LTR ERV1 -24 710 1 316 231 154 28 chrY 1323387 1323530 -50190054 - L1MB7 LINE L1 -2355 4289 4129 * 348 287 29 0 chrY 1323526 1323700 -50189884 - L1MB7 LINE L1 -3203 3441 3263 * 2457 253 57 44 chrY 1323697 1324472 -50189112 - L1MB7 LINE L1 -5750 792 8 789 208 13 0 chrY 1324538 1324692 -50188892 - AluSg/x SINE Alu 0 310 155 646 275 66 19 chrY 1324747 1325076 -50188508 - MLT1E1 LTR MaLR -262 392 1 44 20 0 0 chrY 1325101 1325152 -50188432 + AT_rich Low_complexity Low_complexity 1 51 0 245 280 70 0 chrY 1325152 1325252 -50188332 - L1ME LINE L1 -459 5662 5556 667 270 79 21 chrY 1325256 1325604 -50187980 - MSTD LTR MaLR -3 393 4 260 238 25 25 chrY 1325663 1325743 -50187841 - MIR SINE MIR 0 262 183 1887 140 25 69 chrY 1325804 1325857 -50187727 + THE1C LTR MaLR 1 55 -320 2768 136 71 2 chrY 1325857 1326335 -50187249 - MER9 LTR ERVK 0 511 1 1887 140 25 69 chrY 1326335 1326673 -50186911 + THE1C LTR MaLR 55 375 0 2211 98 3 7 chrY 1326982 1327278 -50186306 - AluSp SINE Alu -18 295 1 3177 255 75 105 chrY 1327774 1329447 -50184137 + L1MCa LINE L1 1 1779 -4785 1359 201 21 4 chrY 1329451 1329730 -50183854 + L1MC3 LINE L1 7304 7587 -198 2420 47 7 0 chrY 1329730 1330026 -50183558 - AluY SINE Alu -13 298 1 3160 286 108 38 chrY 1330043 1332209 -50181375 + L1M4b LINE L1 6 2331 -4628 934 136 32 1 chrY 1332226 1332409 -50181175 - MER61E LTR ERV1 -20 774 340 243 212 0 106 chrY 1332521 1332587 -50180997 - MER61E LTR ERV1 -412 157 99 * 258 214 34 90 chrY 1332584 1332673 -50180911 - LTR25 LTR ERV1 -431 363 280 29 28 0 0 chrY 1333104 1333140 -50180444 + AT_rich Low_complexity Low_complexity 1 36 0 22 35 0 0 chrY 1333176 1333205 -50180379 + AT_rich Low_complexity Low_complexity 1 29 0 2373 249 72 41 chrY 1333209 1334223 -50179361 + L1M4b LINE L1 2623 3604 -3353 2151 131 0 0 chrY 1334223 1334521 -50179063 + AluSg SINE Alu 1 298 -12 2373 249 72 41 chrY 1334521 1334611 -50178973 + L1M4b LINE L1 3604 3690 -3267 1337 146 22 22 chrY 1334611 1334886 -50178698 + L1MA2 LINE L1 6030 6304 0 2373 249 72 41 chrY 1334886 1335268 -50178316 + L1M4b LINE L1 3690 4105 -2852 618 189 0 0 chrY 1335277 1335388 -50178196 + FLAM_C SINE Alu 9 119 -24 189 107 0 0 chrY 1335388 1335416 -50178168 + (TAAA)n Simple_repeat Simple_repeat 3 30 0 2226 253 20 68 chrY 1335448 1336376 -50177208 + L1M4b LINE L1 4116 4999 -1958 7176 243 52 5 chrY 1336379 1338066 -50175518 - ERVL LTR ERVL -2149 3615 1851 528 254 18 0 chrY 1338046 1338160 -50175424 - ERVL LTR ERVL -4587 1177 1062 * 76 65 0 0 chrY 1338160 1338299 -50175285 + AT_rich Low_complexity Low_complexity 1 139 0 503 301 11 22 chrY 1338331 1338514 -50175070 - ERVL LTR ERVL -4721 1043 863 1271 229 80 6 chrY 1338536 1338850 -50174734 - MLT2C1 LTR ERVL -56 341 5 2091 211 45 48 chrY 1338855 1339556 -50174028 + L1MB8 LINE L1 5674 6174 -4 296 280 20 0 chrY 1340523 1340623 -50172961 - L1M4 LINE L1 -2218 3928 3827 398 267 5 82 chrY 1340680 1340875 -50172709 - L1MEc LINE L1 -4819 1396 1217 1359 249 76 83 chrY 1340893 1341136 -50172448 + MLT1F1 LTR MaLR 1 244 -323 3691 167 110 17 chrY 1341136 1341892 -50171692 - LTR1B LTR ERV1 0 826 1 1359 249 76 83 chrY 1341892 1342190 -50171394 + MLT1F1 LTR MaLR 244 563 -4 561 261 100 49 chrY 1342213 1342500 -50171084 - L1MEc LINE L1 -4872 1357 1069 1620 213 14 19 chrY 1342500 1342861 -50170723 - MLT1A1 LTR MaLR 0 365 7 924 125 17 10 chrY 1342885 1343183 -50170401 + (TA)n Simple_repeat Simple_repeat 1 300 0 1302 112 6 0 chrY 1343186 1343365 -50170219 - AluSg/x SINE Alu -20 289 110 2327 261 67 18 chrY 1343430 1344284 -50169300 - L1MEc LINE L1 -4968 912 45 21 36 0 0 chrY 1344303 1344331 -50169253 + AT_rich Low_complexity Low_complexity 1 28 0 206 324 127 12 chrY 1344479 1344652 -50168932 - L2 LINE L2 0 3313 3121 629 58 0 0 chrY 1344810 1344896 -50168688 + L1MA1 LINE L1 6213 6298 -4 252 174 0 0 chrY 1344956 1345002 -50168582 - MLT2B2 LTR ERVL -6 509 464 1809 226 116 9 chrY 1345002 1345449 -50168135 - MLT2B2 LTR ERVL -20 495 1 11702 189 9 43 chrY 1345451 1346863 -50166721 - ERVL-B2 LTR ERVL -9 5755 4297 2020 222 21 2 chrY 1346863 1347287 -50166297 - MSTB1 LTR MaLR 0 432 1 11702 189 9 43 chrY 1347287 1348049 -50165535 - ERVL-B2 LTR ERVL -1467 4297 3662 2123 215 24 5 chrY 1348049 1348467 -50165117 - MSTB LTR MaLR 0 426 1 11702 189 9 43 chrY 1348467 1348620 -50164964 - ERVL-B2 LTR ERVL -2102 3662 3505 6312 158 34 3 chrY 1348717 1350124 -50163460 + L1MA1 LINE L1 4832 6302 0 212 316 13 0 chrY 1350817 1350896 -50162688 + MIR SINE MIR 181 260 -2 33 43 0 0 chrY 1351024 1351071 -50162513 + AT_rich Low_complexity Low_complexity 1 47 0 1151 108 11 5 chrY 1351495 1351681 -50161903 - L1MA6 LINE L1 0 6300 6114 31 26 0 0 chrY 1352078 1352116 -50161468 + AT_rich Low_complexity Low_complexity 1 38 0 2921 220 54 18 chrY 1352128 1352868 -50160716 - L1MC3 LINE L1 -1635 6150 5384 185 0 40 0 chrY 1353350 1353375 -50160209 + (TA)n Simple_repeat Simple_repeat 1 26 0 1424 251 123 34 chrY 1353401 1353872 -50159712 + MLT1E LTR MaLR 8 520 -73 355 286 87 43 chrY 1354035 1354220 -50159364 + L2 LINE L2 3093 3285 -28 511 315 76 21 chrY 1354452 1354690 -50158894 + MIR SINE MIR 5 255 -7 318 357 0 9 chrY 1354736 1354848 -50158736 + MIR SINE MIR 2 112 -150 25 75 0 0 chrY 1354884 1354937 -50158647 + AT_rich Low_complexity Low_complexity 1 53 0 6596 84 2 3 chrY 1354962 1356625 -50156959 - L1PA8 LINE L1 -3 6169 4510 251 274 84 11 chrY 1356626 1356721 -50156863 + MIR SINE MIR 159 260 -2 26 30 0 0 chrY 1358708 1358741 -50154843 + AT_rich Low_complexity Low_complexity 1 33 0 318 301 21 21 chrY 1359323 1359416 -50154168 + L2 LINE L2 3102 3194 -78 3612 164 33 45 chrY 1361209 1361447 -50152137 - LTR62 LTR ERVK -4 715 476 2478 53 0 0 chrY 1361447 1361748 -50151836 + AluY SINE Alu 1 301 -10 3612 164 33 45 chrY 1361748 1362227 -50151357 - LTR62 LTR ERVK -243 476 6 31 44 0 0 chrY 1362894 1362939 -50150645 + AT_rich Low_complexity Low_complexity 1 45 0 323 228 43 0 chrY 1363313 1363405 -50150179 - L1ME LINE L1 -354 5808 5713 9966 191 53 2 chrY 1363546 1364662 -50148922 + L1MA1 LINE L1 584 1836 -5729 360 0 0 0 chrY 1364662 1364702 -50148882 + (GA)n Simple_repeat Simple_repeat 1 40 0 9966 191 53 2 chrY 1364702 1365467 -50148117 + L1MA1 LINE L1 1836 2561 -5004 12782 216 22 17 chrY 1365476 1369013 -50144571 + L1PB1 LINE L1 3 3520 -3347 246 32 0 0 chrY 1369013 1369044 -50144540 + (CA)n Simple_repeat Simple_repeat 2 32 0 12782 216 22 17 chrY 1369044 1369658 -50143926 + L1PB1 LINE L1 3520 4129 -2738 1848 164 4 0 chrY 1369658 1369938 -50143646 + AluSx SINE Alu 1 281 -31 350 21 21 0 chrY 1369941 1369988 -50143596 + (TAAAA)n Simple_repeat Simple_repeat 2 49 0 12782 216 22 17 chrY 1369988 1370230 -50143354 + L1PB1 LINE L1 4130 4369 -2498 2111 108 0 30 chrY 1370230 1370535 -50143049 + AluSc SINE Alu 6 301 -8 12782 216 22 17 chrY 1370535 1372665 -50140919 + L1PB1 LINE L1 4369 6859 -8 297 0 0 0 chrY 1372674 1372707 -50140877 + (TG)n Simple_repeat Simple_repeat 2 34 0 13100 183 31 17 chrY 1372786 1377797 -50135787 + L1MA1 LINE L1 2513 7721 0 24 32 0 0 chrY 1377797 1377828 -50135756 + AT_rich Low_complexity Low_complexity 1 31 0 1868 131 29 0 chrY 1377918 1378219 -50135365 - AluSx SINE Alu 0 309 1 213 192 96 55 chrY 1378390 1378463 -50135121 + L2 LINE L2 3150 3225 -88 3922 154 52 42 chrY 1379295 1380658 -50132926 + pTR5 LTR ERV1 741 2438 0 273 250 12 24 chrY 1380841 1380924 -50132660 - Charlie4a DNA MER1_type -1 507 426 515 186 0 39 chrY 1380924 1381026 -50132558 + MER4A LTR ERV1 1 98 -566 1479 142 13 120 chrY 1381026 1381413 -50132171 + MER4A LTR ERV1 261 664 0 2486 125 95 43 chrY 1381416 1382031 -50131553 + MER4A-int LTR ERV1 1 812 -5786 1163 266 85 3 chrY 1382133 1382452 -50131132 + MER4A-int LTR ERV1 1860 2204 -4127 5096 146 79 30 chrY 1382472 1383453 -50130131 + MER4A-int LTR ERV1 189 1185 -5573 3679 99 101 18 chrY 1383434 1384110 -50129474 + MER4A-int LTR ERV1 1764 2495 -4103 * 913 175 218 0 chrY 1384110 1384321 -50129263 - LTR8 LTR ERV1 -434 257 1 3374 167 74 25 chrY 1384327 1385207 -50128377 + MER4A-int LTR ERV1 2759 3681 -2917 * 13225 121 53 71 chrY 1385206 1388015 -50125569 + MER4A-int LTR ERV1 3837 6596 -2 602 111 10 20 chrY 1388042 1388141 -50125443 + MER4A LTR ERV1 1 98 -566 1614 144 158 78 chrY 1388141 1388515 -50125069 + MER4A LTR ERV1 261 664 0 921 256 96 23 chrY 1388520 1388914 -50124670 - Charlie4a DNA MER1_type -84 424 2 6070 118 43 12 chrY 1389665 1390684 -50122900 + L1MA2 LINE L1 5254 6304 0 2523 233 18 11 chrY 1392116 1392156 -50121428 - MLT2B3 LTR ERVL 0 554 516 240 35 0 0 chrY 1392156 1392185 -50121399 + (CATA)n Simple_repeat Simple_repeat 2 30 0 2523 233 18 11 chrY 1392185 1392694 -50120890 - MLT2B3 LTR ERVL -38 516 1 5024 171 10 7 chrY 1393496 1393898 -50119686 + L1PA15 LINE L1 5090 5489 -676 189 74 0 0 chrY 1393898 1393925 -50119659 + (CAAAA)n Simple_repeat Simple_repeat 3 29 0 5024 171 10 7 chrY 1393925 1394596 -50118988 + L1PA15 LINE L1 5489 6163 -2 2678 223 26 23 chrY 1394703 1395349 -50118235 + MER82 DNA MER2_type 2 649 -4 180 176 0 0 chrY 1395423 1395457 -50118127 + GA-rich Low_complexity Low_complexity 1 34 0 633 161 0 18 chrY 1395576 1395688 -50117896 - FLAM_C SINE Alu -12 131 22 37 23 0 0 chrY 1396274 1396318 -50117266 + AT_rich Low_complexity Low_complexity 1 44 0 228 214 0 57 chrY 1396318 1396388 -50117196 + L1M4 LINE L1 4749 4814 -1332 23 86 0 0 chrY 1396513 1396571 -50117013 + AT_rich Low_complexity Low_complexity 1 58 0 374 316 43 0 chrY 1397209 1397326 -50116258 + MIR SINE MIR 40 161 -101 679 235 31 133 chrY 1397335 1397718 -50115866 + MLT1B LTR MaLR 18 386 -4 256 327 50 0 chrY 1397720 1397821 -50115763 + MIR SINE MIR 154 259 -3 327 347 45 23 chrY 1397928 1398104 -50115480 + MIR SINE MIR 1 180 -82 2160 52 7 17 chrY 1398172 1398510 -50115074 + AluY SINE Alu 1 335 0 848 320 68 10 chrY 1398596 1399084 -50114500 + Charlie7 DNA MER1_type 43 558 -2054 7849 158 18 41 chrY 1399130 1400623 -50112961 - Tigger1 DNA MER2_type -1 2417 959 3931 180 10 1 chrY 1400640 1401311 -50112273 - Tigger1 DNA MER2_type -1741 677 1 189 147 0 0 chrY 1401497 1401531 -50112053 + (TA)n Simple_repeat Simple_repeat 1 34 0 432 237 54 0 chrY 1401756 1401849 -50111735 + L1MC1 LINE L1 19 116 -6310 * 7101 238 44 44 chrY 1401825 1402706 -50110878 + L1MC1 LINE L1 2853 3733 -2880 2220 97 10 3 chrY 1402706 1403014 -50110570 + AluSx SINE Alu 1 310 -2 7101 238 44 44 chrY 1403014 1404077 -50109507 + L1MC1 LINE L1 3733 4795 -1818 1543 198 52 25 chrY 1404077 1404259 -50109325 + THE1C LTR MaLR 1 177 -198 234 62 0 0 chrY 1404259 1404291 -50109293 + (CA)n Simple_repeat Simple_repeat 2 33 0 1543 198 52 25 chrY 1404291 1404472 -50109112 + THE1C LTR MaLR 177 374 -1 7101 238 44 44 chrY 1404472 1406276 -50107308 + L1MC1 LINE L1 4795 6596 -17 13353 212 36 13 chrY 1406383 1406736 -50106848 + L1PB1 LINE L1 1326 1669 -5198 207 0 0 0 chrY 1406736 1406759 -50106825 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 13353 212 36 13 chrY 1406759 1407187 -50106397 + L1PB1 LINE L1 1669 2086 -4781 274 81 0 0 chrY 1407187 1407224 -50106360 - MADE1 DNA Mariner -41 39 3 13353 212 36 13 chrY 1407224 1409340 -50104244 + L1PB1 LINE L1 2086 4151 -2716 267 54 0 0 chrY 1409340 1409377 -50104207 + (CAA)n Simple_repeat Simple_repeat 2 38 0 13353 212 36 13 chrY 1409377 1411208 -50102376 + L1PB1 LINE L1 4151 6291 -576 4501 107 140 26 chrY 1411208 1411949 -50101635 - LTR12 LTR ERV1 0 826 1 13353 212 36 13 chrY 1411949 1412122 -50101462 + L1PB1 LINE L1 6291 6458 -409 360 111 0 0 chrY 1412124 1412178 -50101406 + (TA)n Simple_repeat Simple_repeat 2 55 0 2207 144 14 0 chrY 1412178 1412538 -50101046 + L1PB1 LINE L1 6502 6866 -1 1933 95 0 4 chrY 1412725 1412978 -50100606 - AluY SINE Alu -16 295 44 25 31 0 0 chrY 1413148 1413180 -50100404 + AT_rich Low_complexity Low_complexity 1 32 0 733 248 0 43 chrY 1413351 1413561 -50100023 - L1PA16 LINE L1 -5 6161 5961 1603 192 13 6 chrY 1413561 1413874 -50099710 - L1PA15 LINE L1 0 6816 6502 1012 225 120 0 chrY 1413908 1414184 -50099400 - L1PA15 LINE L1 -1415 5382 5074 1957 190 80 3 chrY 1414193 1414582 -50099002 + MSTA LTR MaLR 10 428 0 7358 230 15 9 chrY 1414582 1416219 -50097365 + MSTA-int LTR MaLR 1 1648 -3 1964 200 56 12 chrY 1416222 1416632 -50096952 + MSTA LTR MaLR 1 428 0 10821 224 25 31 chrY 1416632 1420275 -50093309 - L1PA15 LINE L1 -1720 5077 1459 1307 257 51 60 chrY 1420817 1421284 -50092300 + L1MCa LINE L1 47 509 -5917 995 149 13 53 chrY 1421287 1421488 -50092096 + THE1B LTR MaLR 193 364 0 9194 145 13 35 chrY 1421491 1423068 -50090516 + THE1C-int LTR MaLR 4 1544 -36 2643 211 58 26 chrY 1423068 1423106 -50090478 + LTR39 LTR ERV1 115 150 -633 1460 186 72 31 chrY 1423106 1423466 -50090118 + THE1C LTR MaLR 1 375 0 2643 211 58 26 chrY 1423466 1424047 -50089537 + LTR39 LTR ERV1 150 754 -29 3786 186 19 8 chrY 1424054 1424758 -50088826 - MER50 LTR ERV1 -23 711 1 2057 120 13 13 chrY 1424758 1425075 -50088509 - MER50-int LTR ERV1 -8 7197 6881 * 19817 152 29 29 chrY 1425072 1425449 -50088135 - MER50-int LTR ERV1 -1177 6028 5652 189 265 61 0 chrY 1425449 1425498 -50088086 + MIR SINE MIR 69 120 -88 19817 152 29 29 chrY 1425498 1429698 -50083886 - MER50-int LTR ERV1 -1553 5652 446 13193 145 10 2 chrY 1429698 1431898 -50081686 + L1PA10 LINE L1 3082 5299 -847 1418 163 11 65 chrY 1431911 1432187 -50081397 + AluSx SINE Alu 38 298 -14 5690 102 8 19 chrY 1432188 1433029 -50080555 + L1PA10 LINE L1 5320 6151 -17 857 97 15 30 chrY 1433029 1433163 -50080421 - MER50-int LTR ERV1 -6311 894 763 290 105 0 0 chrY 1433177 1433215 -50080369 + MER50-int LTR ERV1 757 794 -6411 * 4840 147 8 4 chrY 1433214 1433969 -50079615 - MER50-int LTR ERV1 -6447 758 1 3543 153 45 53 chrY 1433969 1434239 -50079345 - MER50 LTR ERV1 0 734 463 2344 82 7 0 chrY 1434239 1434544 -50079040 - AluSc SINE Alu -2 307 1 3543 153 45 53 chrY 1434544 1435013 -50078571 - MER50 LTR ERV1 -271 463 1 23 54 0 0 chrY 1435126 1435163 -50078421 + AT_rich Low_complexity Low_complexity 1 37 0 22 35 0 0 chrY 1436016 1436045 -50077539 + AT_rich Low_complexity Low_complexity 1 29 0 1992 205 123 91 chrY 1436341 1437092 -50076492 + LTR48 LTR ERV1 13 787 0 24 67 0 0 chrY 1438318 1438363 -50075221 + AT_rich Low_complexity Low_complexity 1 45 0 1982 86 82 4 chrY 1438575 1438854 -50074730 - AluSq SINE Alu -12 301 1 858 246 20 106 chrY 1439815 1440210 -50073374 + MLT1A1 LTR MaLR 5 365 0 30 0 0 0 chrY 1441140 1441170 -50072414 + AT_rich Low_complexity Low_complexity 1 30 0 29 28 0 0 chrY 1441917 1441953 -50071631 + AT_rich Low_complexity Low_complexity 1 36 0 187 283 0 19 chrY 1442891 1442944 -50070640 + MIR SINE MIR 161 212 -50 280 275 68 2 chrY 1443463 1443566 -50070018 - MIR SINE MIR -65 143 36 3372 172 47 37 chrY 1443659 1443709 -50069875 - L1MC2 LINE L1 -10 6614 6566 2250 69 0 33 chrY 1443709 1444013 -50069571 + AluY SINE Alu 1 294 -17 3372 172 47 37 chrY 1444013 1444711 -50068873 - L1MC2 LINE L1 -58 6566 5859 * 6973 208 12 6 chrY 1444695 1447196 -50066388 + L1PA16 LINE L1 3658 6166 0 2604 246 76 14 chrY 1447196 1448508 -50065076 - L1MC2 LINE L1 -750 5676 4477 1824 248 27 8 chrY 1448501 1449311 -50064273 - L1MC2 LINE L1 -3353 3073 2247 * 318 271 82 29 chrY 1449348 1449518 -50064066 + L1MCa LINE L1 2051 2229 -4197 369 243 19 0 chrY 1449691 1449794 -50063790 - L1MA10 LINE L1 -2 6332 6228 399 322 29 21 chrY 1449802 1450108 -50063476 - L1M4 LINE L1 -2324 3822 3519 21 36 0 0 chrY 1450646 1450674 -50062910 + AT_rich Low_complexity Low_complexity 1 28 0 32 0 0 0 chrY 1451125 1451157 -50062427 + AT_rich Low_complexity Low_complexity 1 32 0 9202 240 81 21 chrY 1451157 1455329 -50058255 - L1PA16 LINE L1 -22 6144 1706 599 173 10 0 chrY 1455349 1455453 -50058131 - U6 snRNA snRNA -2 105 1 244 323 71 32 chrY 1455712 1455867 -50057717 - MIR SINE MIR -10 252 92 22 0 0 0 chrY 1456369 1456391 -50057193 + AT_rich Low_complexity Low_complexity 1 22 0 738 295 91 21 chrY 1457148 1457389 -50056195 - MIR SINE MIR 0 262 5 21 0 0 0 chrY 1458353 1458374 -50055210 + AT_rich Low_complexity Low_complexity 1 21 0 474 260 48 57 chrY 1458555 1458782 -50054802 + HAL1 LINE L1 2283 2507 0 16497 170 19 17 chrY 1458805 1461778 -50051806 + L1PA15-16 LINE L1 1 2979 -3870 2201 106 0 3 chrY 1461927 1462220 -50051364 - AluY SINE Alu -19 292 1 28 0 0 0 chrY 1462231 1462259 -50051325 + AT_rich Low_complexity Low_complexity 1 28 0 334 133 94 39 chrY 1462268 1462396 -50051188 + (TATAA)n Simple_repeat Simple_repeat 1 135 0 402 329 58 13 chrY 1462839 1462994 -50050590 - L2 LINE L2 -2074 1240 1079 2219 92 20 32 chrY 1463589 1463936 -50049648 - L1PA12 LINE L1 -2 6166 5824 253 349 94 9 chrY 1464007 1464113 -50049471 - L2 LINE L2 -5 3308 3194 329 365 37 45 chrY 1464310 1464554 -50049030 - MIR SINE MIR -19 243 2 483 214 10 10 chrY 1464582 1464680 -50048904 - Tigger7 DNA MER2_type 0 2487 2390 1094 235 49 4 chrY 1464680 1464927 -50048657 - Tigger7 DNA MER2_type -2223 264 7 201 342 22 82 chrY 1465864 1466048 -50047536 + L2 LINE L2 2911 3083 -189 207 333 67 44 chrY 1466165 1466255 -50047329 + L2 LINE L2 3173 3264 -8 1670 48 0 0 chrY 1467445 1467653 -50045931 - L1PA4 LINE L1 -8 6147 5940 2141 143 75 36 chrY 1469162 1469574 -50044010 - MSTA LTR MaLR 0 428 1 24 53 0 0 chrY 1469664 1469702 -50043882 + AT_rich Low_complexity Low_complexity 1 38 0 2209 96 0 0 chrY 1470287 1470607 -50042977 - AluSc SINE Alu 0 320 1 25 0 0 0 chrY 1470872 1470897 -50042687 + AT_rich Low_complexity Low_complexity 1 25 0 440 254 103 87 chrY 1471021 1471206 -50042378 - MIR SINE MIR -25 237 50 280 318 29 64 chrY 1471273 1471446 -50042138 + MER5B DNA MER1_type 2 168 -10 9036 184 105 19 chrY 1472032 1472966 -50040618 - L1MA3 LINE L1 -215 7509 6657 198 0 0 0 chrY 1472966 1472988 -50040596 + (TTTTA)n Simple_repeat Simple_repeat 4 25 0 9036 184 105 19 chrY 1472988 1475242 -50038342 - L1MA3 LINE L1 -1067 6657 4027 1686 212 3 3 chrY 1475240 1475551 -50038033 - L1MA3 LINE L1 -6840 725 415 * 3078 169 49 34 chrY 1475551 1476368 -50037216 - pTR5 LTR ERV1 -437 2001 5 320 246 45 18 chrY 1476940 1477050 -50036534 - L1MA9 LINE L1 -173 6139 6027 6811 248 43 36 chrY 1477720 1479404 -50034180 + L1M3 LINE L1 2466 4137 -2009 2142 125 6 10 chrY 1479404 1479717 -50033867 + AluSx SINE Alu 1 312 0 6811 248 43 36 chrY 1479717 1479830 -50033754 + L1M3 LINE L1 4137 4248 -1898 2426 83 0 0 chrY 1479830 1480142 -50033442 - AluSq SINE Alu -1 312 1 6811 248 43 36 chrY 1480142 1480371 -50033213 + L1M3 LINE L1 4248 4474 -1672 1503 220 31 11 chrY 1480371 1480725 -50032859 + MLT1A1 LTR MaLR 5 365 0 6811 248 43 36 chrY 1480725 1481452 -50032132 + L1M3 LINE L1 4474 5297 -849 2188 150 29 3 chrY 1481465 1481839 -50031745 + L1M3 LINE L1 5401 5784 -399 1595 239 20 0 chrY 1481841 1482197 -50031387 - MLT1A1 LTR MaLR -2 363 1 4471 241 47 51 chrY 1482197 1483481 -50030103 - MLT1A1-int LTR MaLR 0 1735 458 2621 204 24 9 chrY 1483464 1484042 -50029542 + L1MA7 LINE L1 5350 5936 -355 * 252 0 0 0 chrY 1484313 1484341 -50029243 + (CA)n Simple_repeat Simple_repeat 2 29 0 273 29 0 0 chrY 1484342 1484376 -50029208 + (GA)n Simple_repeat Simple_repeat 1 34 0 811 311 72 43 chrY 1484783 1485253 -50028331 - MLT1H LTR MaLR -1 548 65 1344 204 139 79 chrY 1485443 1485962 -50027622 + MLT2B3 LTR ERVL 1 550 -4 230 291 0 0 chrY 1485966 1486021 -50027563 + Tigger5 DNA MER2_type 1 55 -2268 * 514 209 38 0 chrY 1486013 1486118 -50027466 + Tigger5 DNA MER2_type 2215 2323 0 727 341 35 29 chrY 1486499 1486950 -50026634 + L1PA16 LINE L1 789 1242 -6332 1725 150 7 0 chrY 1487273 1487546 -50026038 + AluSx SINE Alu 3 277 -35 868 295 59 33 chrY 1487863 1488165 -50025419 + L1PA16 LINE L1 2183 2476 -5098 297 0 0 0 chrY 1488165 1488198 -50025386 + (CAAA)n Simple_repeat Simple_repeat 2 34 0 868 295 59 33 chrY 1488198 1488298 -50025286 + L1PA16 LINE L1 2476 2589 -4985 2415 76 3 0 chrY 1488298 1488599 -50024985 + AluY SINE Alu 1 302 -9 868 295 59 33 chrY 1488599 1488651 -50024933 + L1PA16 LINE L1 2589 2638 -4936 2844 104 35 14 chrY 1488652 1489043 -50024541 + MLT2A1 LTR ERVL 1 403 -41 243 61 0 0 chrY 1489043 1489076 -50024508 + (TA)n Simple_repeat Simple_repeat 1 33 0 2844 104 35 14 chrY 1489076 1489116 -50024468 + MLT2A1 LTR ERVL 403 441 -3 40674 91 15 8 chrY 1489120 1493777 -50019807 + HERVL-A1 LTR ERVL 1 4732 -922 194 88 0 29 chrY 1493777 1493811 -50019773 + L2 LINE L2 1661 1693 -1621 40674 91 15 8 chrY 1493811 1494664 -50018920 + HERVL-A1 LTR ERVL 4732 5578 -76 2818 111 0 5 chrY 1494701 1495107 -50018477 + MLT2A1 LTR ERVL 1 404 -40 278 137 20 20 chrY 1495111 1495213 -50018371 + (TA)n Simple_repeat Simple_repeat 1 102 0 290 139 74 8 chrY 1495246 1495314 -50018270 + MLT2A2 LTR ERVL 400 453 0 12610 238 22 11 chrY 1495345 1500208 -50013376 + L1PA16 LINE L1 2676 7598 -6 184 0 0 88 chrY 1500442 1500476 -50013108 + (TTTTC)n Simple_repeat Simple_repeat 5 35 0 444 279 31 8 chrY 1500493 1500622 -50012962 + MIR SINE MIR 61 192 -70 23 0 0 0 chrY 1500754 1500777 -50012807 + AT_rich Low_complexity Low_complexity 1 23 0 262 258 31 12 chrY 1501450 1501613 -50011971 + (TA)n Simple_repeat Simple_repeat 2 167 0 9353 26 1 3 chrY 1501639 1503522 -50010062 - L1PA3 LINE L1 -3 6152 4271 280 249 45 124 chrY 1504872 1505049 -50008535 + MER103 DNA DNA 1 163 -3 21 36 0 0 chrY 1505277 1505305 -50008279 + AT_rich Low_complexity Low_complexity 1 28 0 191 267 22 67 chrY 1506502 1506592 -50006992 - MIR3 SINE MIR -13 195 110 202 244 0 0 chrY 1507415 1507460 -50006124 + (TA)n Simple_repeat Simple_repeat 1 45 0 1823 209 66 18 chrY 1508705 1509145 -50004439 + LOR1b LTR ERV1 1 461 0 656 142 55 31 chrY 1509148 1509275 -50004309 + LOR1b-int LTR ERV1 266 395 -7725 3301 153 83 15 chrY 1509276 1509890 -50003694 + LOR1-int LTR ERV1 203 858 -7262 881 158 35 0 chrY 1509882 1510053 -50003531 + LOR1-int LTR ERV1 2075 2251 -5869 * 2938 52 6 0 chrY 1510055 1510420 -50003164 - L1PA7 LINE L1 -4 6150 5784 12568 98 6 7 chrY 1510439 1512274 -50001310 + L1P LINE L1 1783 3615 -2531 1302 247 136 42 chrY 1512277 1513066 -50000518 - LTR28 LTR ERV1 -27 993 1 8436 125 30 33 chrY 1513066 1514540 -49999044 + LOR1b-int LTR ERV1 2363 3833 -4287 9631 139 31 32 chrY 1514580 1516367 -49997217 + LOR1b-int LTR ERV1 3743 5528 -2592 1596 161 20 0 chrY 1516353 1516608 -49996976 + LOR1b-int LTR ERV1 5801 6060 -2060 * 578 135 0 0 chrY 1516610 1516699 -49996885 + LOR1b-int LTR ERV1 8030 8118 -2 2028 189 90 2 chrY 1516710 1517134 -49996450 + LOR1b LTR ERV1 1 461 0 11934 243 52 24 chrY 1517378 1523766 -49989818 - L1MA5 LINE L1 -6 7356 1 712 235 45 30 chrY 1524847 1525047 -49988537 - MER3 DNA MER1_type -5 204 2 265 309 41 0 chrY 1525133 1525230 -49988354 - Charlie7 DNA MER1_type -2511 101 1 21 36 0 0 chrY 1525437 1525465 -49988119 + AT_rich Low_complexity Low_complexity 1 28 0 22 0 0 0 chrY 1525833 1525855 -49987729 + AT_rich Low_complexity Low_complexity 1 22 0 375 41 0 0 chrY 1526763 1526812 -49986772 + (GA)n Simple_repeat Simple_repeat 2 50 0 1734 139 88 0 chrY 1527007 1527280 -49986304 - AluSx SINE Alu -15 297 1 10674 203 52 105 chrY 1527357 1530093 -49983491 + L1P3 LINE L1 4 2858 -3603 1864 150 64 9 chrY 1530093 1530420 -49983164 + THE1B LTR MaLR 1 345 -19 10674 203 52 105 chrY 1530420 1531639 -49981945 + L1P3 LINE L1 2858 4141 -2320 425 250 56 0 chrY 1531627 1531735 -49981849 + L1MC4a LINE L1 6725 6838 -970 * 24 32 0 0 chrY 1531738 1531769 -49981815 + AT_rich Low_complexity Low_complexity 1 31 0 654 294 86 46 chrY 1531885 1532517 -49981067 + L1M4 LINE L1 3106 3822 -2324 387 0 0 0 chrY 1532517 1532560 -49981024 + (CA)n Simple_repeat Simple_repeat 2 44 0 654 294 86 46 chrY 1532560 1533006 -49980578 + L1M4 LINE L1 3822 4249 -1897 1434 192 137 57 chrY 1533118 1533519 -49980065 - MLT2B1 LTR ERVL -87 433 1 366 247 58 31 chrY 1533643 1533866 -49979718 + L1M4 LINE L1 4370 4598 -1548 384 296 107 9 chrY 1533916 1534233 -49979351 + L1M4 LINE L1 4711 5058 -1088 430 284 57 5 chrY 1534237 1534431 -49979153 + L1M4 LINE L1 4904 5107 -1039 * 1784 282 73 25 chrY 1534417 1535360 -49978224 + L1MC4a LINE L1 2235 3132 -3014 1605 176 0 41 chrY 1535360 1535650 -49977934 + AluJo SINE Alu 1 278 -34 396 0 0 0 chrY 1535650 1535694 -49977890 + (TAAA)n Simple_repeat Simple_repeat 2 45 0 1784 282 73 25 chrY 1535694 1535739 -49977845 + L1MC4a LINE L1 3131 3271 -2875 1634 107 0 0 chrY 1535750 1535965 -49977619 + AluSq SINE Alu 5 219 -94 467 153 119 0 chrY 1535991 1536154 -49977430 + AluSg/x SINE Alu 176 352 0 893 122 0 7 chrY 1536160 1536308 -49977276 + (GGAA)n Simple_repeat Simple_repeat 3 149 0 1199 271 10 43 chrY 1536331 1536837 -49976747 + L1MC4a LINE L1 3289 3777 -2369 1247 258 54 16 chrY 1536851 1537239 -49976345 + L1MD2 LINE L1 5947 6349 -10 4968 246 58 47 chrY 1537240 1539191 -49974393 + L1MC4a LINE L1 5837 7808 0 451 315 65 6 chrY 1539196 1539623 -49973961 + L1MC4a LINE L1 5189 5639 -525 2067 93 40 0 chrY 1539758 1540036 -49973548 + AluY SINE Alu 1 289 -22 24 0 0 0 chrY 1540039 1540063 -49973521 + AT_rich Low_complexity Low_complexity 1 24 0 298 197 115 41 chrY 1540254 1540376 -49973208 + L1ME4a LINE L1 5991 6121 0 442 263 23 8 chrY 1541179 1541312 -49972272 + L1ME3A LINE L1 5994 6128 -42 351 312 37 28 chrY 1541313 1541528 -49972056 + L1MC4a LINE L1 5814 6030 -1778 189 107 0 0 chrY 1541735 1541763 -49971821 + (TTCTCC)n Simple_repeat Simple_repeat 5 32 0 26 30 0 0 chrY 1543318 1543351 -49970233 + AT_rich Low_complexity Low_complexity 1 33 0 1346 168 4 58 chrY 1543530 1543804 -49969780 + AluJb SINE Alu 33 291 -21 493 276 74 12 chrY 1544226 1544389 -49969195 + MER45A DNA AcHobo 3 175 -3 23 0 0 0 chrY 1545341 1545364 -49968220 + AT_rich Low_complexity Low_complexity 1 23 0 26 0 0 0 chrY 1545832 1545858 -49967726 + AT_rich Low_complexity Low_complexity 1 26 0 2394 59 0 13 chrY 1546521 1546824 -49966760 + AluY SINE Alu 1 299 -12 320 301 32 26 chrY 1547256 1547412 -49966172 - L1M4 LINE L1 -3793 2353 2197 3877 213 52 20 chrY 1547564 1548674 -49964910 - L1MA9 LINE L1 -30 6282 5137 5935 220 30 37 chrY 1548680 1548963 -49964621 + L1 LINE L1 3414 3697 -2449 360 0 0 0 chrY 1548963 1549003 -49964581 + (CA)n Simple_repeat Simple_repeat 2 41 0 5935 220 30 37 chrY 1549003 1549949 -49963635 + L1 LINE L1 3697 4648 -1498 2507 146 21 14 chrY 1549949 1550374 -49963210 - MSTA LTR MaLR 0 428 1 7794 207 34 8 chrY 1550375 1551982 -49961602 - MSTA-int LTR MaLR -1 1650 2 2403 156 24 14 chrY 1551984 1552407 -49961177 - MSTA LTR MaLR -1 427 1 5935 220 30 37 chrY 1552407 1552901 -49960683 + L1 LINE L1 4649 5131 -1015 416 324 7 7 chrY 1552971 1553113 -49960471 + MIR SINE MIR 95 236 -26 1470 154 110 65 chrY 1553228 1553657 -49959927 + LTR7 LTR ERV1 1 448 -2 4276 120 3 0 chrY 1553886 1554519 -49959065 + L1PA15 LINE L1 5313 5947 -218 2734 66 54 84 chrY 1554519 1555020 -49958564 + LTR21A LTR ERV1 1 486 -19 1244 105 6 0 chrY 1555024 1555195 -49958389 + L1PA15 LINE L1 5948 6119 -46 308 349 28 0 chrY 1555539 1555648 -49957936 + Charlie1 DNA MER1_type 7 118 -2643 3187 188 8 8 chrY 1555664 1556587 -49956997 - L1PA12 LINE L1 -4103 3481 2552 399 103 0 0 chrY 1556593 1556661 -49956923 - MLT2A2 LTR ERVL 0 453 386 37828 97 5 6 chrY 1556661 1561792 -49951792 - HERVL-A2 LTR ERVL -529 5125 1 3154 112 16 0 chrY 1561792 1562238 -49951346 - MLT2A2 LTR ERVL 0 453 1 9292 221 12 12 chrY 1562249 1562793 -49950791 + L1PA15-16 LINE L1 2762 3305 -3544 2126 192 63 58 chrY 1562793 1563344 -49950240 - MLT2B3 LTR ERVL 0 554 1 9292 221 12 12 chrY 1563344 1565024 -49948560 + L1PA15-16 LINE L1 3305 4985 -1864 249 264 0 0 chrY 1566194 1566247 -49947337 - L2 LINE L2 -2323 991 939 4555 303 63 29 chrY 1566344 1567173 -49946411 - L2 LINE L2 -669 2645 1845 2233 154 39 20 chrY 1567173 1567613 -49945971 + LTR7 LTR ERV1 3 450 0 4555 303 63 29 chrY 1567613 1568546 -49945038 - L2 LINE L2 -1469 1845 945 1324 157 80 110 chrY 1568546 1569010 -49944574 + LTR7 LTR ERV1 1 450 0 4555 303 63 29 chrY 1569010 1569049 -49944535 - L2 LINE L2 -2369 945 909 1898 140 51 40 chrY 1569049 1569420 -49944164 - THE1C LTR MaLR 0 375 1 4555 303 63 29 chrY 1569420 1569511 -49944073 - L2 LINE L2 -2405 909 687 1208 231 51 20 chrY 1569766 1570061 -49943523 + MLT1C LTR MaLR 1 304 -163 3518 231 26 22 chrY 1570063 1571058 -49942526 - L1P LINE L1 -2192 3954 2956 1877 199 94 35 chrY 1571060 1571573 -49942011 - L1PA16 LINE L1 0 6166 5624 476 215 65 0 chrY 1572311 1572404 -49941180 + Tigger3b DNA MER2_type 1 99 -1132 4499 182 28 10 chrY 1572408 1573316 -49940268 + Tigger3b DNA MER2_type 277 1200 -31 11424 157 17 38 chrY 1573351 1574821 -49938763 + Tigger1 DNA MER2_type 1 1500 -918 877 209 0 0 chrY 1574821 1574979 -49938605 + FRAM SINE Alu 3 160 -6 11424 157 17 38 chrY 1574979 1575334 -49938250 + Tigger1 DNA MER2_type 1500 1861 -557 423 0 0 0 chrY 1575334 1575381 -49938203 + (TCTCCC)n Simple_repeat Simple_repeat 1 47 0 9646 82 47 2 chrY 1575381 1576645 -49936939 + SVA Other Other 50 1369 -17 208 51 26 26 chrY 1576651 1576690 -49936894 + (TAAAA)n Simple_repeat Simple_repeat 2 40 0 11424 157 17 38 chrY 1576690 1576990 -49936594 + Tigger1 DNA MER2_type 1865 2091 -327 8586 190 18 8 chrY 1577009 1578632 -49934952 + L1PBa LINE L1 1 1639 -5224 7053 159 53 16 chrY 1578628 1579708 -49933876 + L1PB2 LINE L1 50 1088 -5115 * 2160 94 0 20 chrY 1579708 1580006 -49933578 + AluSg SINE Alu 17 308 -2 7053 159 53 16 chrY 1580006 1581279 -49932305 + L1PB2 LINE L1 1088 2483 -3720 2907 227 13 21 chrY 1581260 1582027 -49931557 + L1PB2 LINE L1 3806 4566 -1637 * 4228 138 22 14 chrY 1582034 1582765 -49930819 + L1PB2 LINE L1 5469 6205 -3 1809 164 6 9 chrY 1582777 1583094 -49930490 + Tigger1 DNA MER2_type 2078 2393 -25 234 341 100 18 chrY 1583384 1583554 -49930030 - MIR SINE MIR -10 252 69 185 179 0 18 chrY 1583830 1583886 -49929698 + T-rich Low_complexity Low_complexity 4 58 0 261 344 80 31 chrY 1584220 1584383 -49929201 + L3b LINE CR1 1303 1473 -110 204 196 0 39 chrY 1584733 1584784 -49928800 + CT-rich Low_complexity Low_complexity 3 51 0 1751 190 128 8 chrY 1585176 1585644 -49927940 - MER69 DNA AcHobo -4 2522 1999 689 274 6 6 chrY 1585630 1585798 -49927786 - MER69 DNA AcHobo -1958 568 401 * 21 0 0 0 chrY 1586568 1586589 -49926995 + AT_rich Low_complexity Low_complexity 1 21 0 2121 108 26 10 chrY 1587285 1587592 -49925992 - AluSx SINE Alu 0 312 1 7995 223 57 8 chrY 1588360 1589459 -49924125 + L1MB1 LINE L1 3065 4109 -2059 324 0 0 0 chrY 1589459 1589495 -49924089 + (CA)n Simple_repeat Simple_repeat 2 37 0 7995 223 57 8 chrY 1589495 1591347 -49922237 + L1MB1 LINE L1 4109 6168 0 562 264 214 0 chrY 1591572 1591731 -49921853 - MIR SINE MIR -69 193 1 438 285 65 0 chrY 1591999 1592122 -49921462 + MIR SINE MIR 117 247 -15 186 341 24 12 chrY 1592190 1592275 -49921309 - L3b LINE CR1 -146 1437 1352 6911 52 17 1 chrY 1593250 1594237 -49919347 + L1PA6 LINE L1 5154 6154 0 343 244 12 12 chrY 1595700 1595786 -49917798 + MER54A LTR ERVL 1 86 -815 * 2176 175 27 3 chrY 1595770 1596142 -49917442 + MER54A LTR ERVL 520 900 -1 4452 111 69 8 chrY 1596726 1597394 -49916190 + THE1B-int LTR MaLR 872 1580 0 2474 121 6 3 chrY 1597394 1597757 -49915827 + THE1B LTR MaLR 1 364 0 198 336 24 11 chrY 1597763 1597851 -49915733 - MIR3 SINE MIR -48 160 71 229 127 84 28 chrY 1598046 1598117 -49915467 + (TAGA)n Simple_repeat Simple_repeat 1 75 0 1540 263 185 4 chrY 1598122 1598635 -49914949 - MLT2F LTR ERVL -57 606 1 315 319 70 32 chrY 1598638 1598795 -49914789 + MIR SINE MIR 72 234 -28 22286 183 23 17 chrY 1599354 1605721 -49907863 + L1PA10 LINE L1 1 6479 -4 21 36 0 0 chrY 1606105 1606133 -49907451 + AT_rich Low_complexity Low_complexity 1 28 0 561 256 28 6 chrY 1606365 1606541 -49907043 - MER104 DNA MER2_type 0 180 1 2058 86 17 7 chrY 1607567 1607857 -49905727 - AluSx SINE Alu -19 293 1 350 314 59 0 chrY 1609050 1609219 -49904365 + HAL1 LINE L1 1087 1265 -1242 33 25 0 0 chrY 1609312 1609352 -49904232 + AT_rich Low_complexity Low_complexity 1 40 0 672 236 78 5 chrY 1609352 1609543 -49904041 - L1PA16 LINE L1 -2 6164 5960 * 4968 193 15 7 chrY 1609534 1610745 -49902839 - L1PBa LINE L1 -2843 4019 2799 4201 95 34 0 chrY 1610757 1611376 -49902208 - L1PBa LINE L1 -4122 2741 2102 9158 238 16 17 chrY 1611390 1614870 -49898714 + L1PA16 LINE L1 2516 5988 -178 686 220 52 0 chrY 1615051 1615224 -49898360 + L1PA16 LINE L1 5985 6166 0 1498 122 0 0 chrY 1615312 1615526 -49898058 + AluSg/x SINE Alu 95 308 -2 1633 233 19 74 chrY 1615528 1616266 -49897318 + L1MC1 LINE L1 2350 3044 -3382 5560 220 39 10 chrY 1616302 1618893 -49894691 + L1MC1 LINE L1 3931 6595 -18 191 309 94 74 chrY 1619121 1619578 -49894006 - L2 LINE L2 -1300 2014 1549 350 0 0 0 chrY 1620253 1620299 -49893285 + AluY SINE Alu 256 301 0 749 247 90 0 chrY 1621164 1621342 -49892242 - MER58A DNA MER1_type -30 194 1 243 277 196 16 chrY 1621955 1622139 -49891445 + L1ME LINE L1 5569 5785 -336 266 305 119 0 chrY 1622725 1622843 -49890741 - MLT1L LTR MaLR -2 613 482 388 294 24 8 chrY 1622927 1623053 -49890531 - MLT1L LTR MaLR -375 240 113 313 209 64 122 chrY 1623985 1624157 -49889427 - HAL1b LINE L1 0 1348 1187 268 301 13 78 chrY 1624574 1624727 -49888857 - MER5B DNA MER1_type -34 144 2 25 31 0 0 chrY 1625068 1625100 -49888484 + AT_rich Low_complexity Low_complexity 1 32 0 267 54 0 0 chrY 1626182 1626219 -49887365 + (TG)n Simple_repeat Simple_repeat 2 38 0 2360 131 16 11 chrY 1626495 1626868 -49886716 - THE1C LTR MaLR 0 375 1 6917 151 14 9 chrY 1626868 1627981 -49885603 - THE1C-int LTR MaLR 0 1580 463 739 219 52 41 chrY 1627981 1628251 -49885333 + pTR5 LTR ERV1 756 1028 -1410 1734 102 198 220 chrY 1628343 1628949 -49884635 + pTR5 LTR ERV1 31 558 -156 2544 136 101 5 chrY 1628951 1629386 -49884198 - THE1C-int LTR MaLR -1103 477 1 2462 112 48 0 chrY 1629386 1629744 -49883840 - THE1C LTR MaLR 0 375 1 230 351 18 9 chrY 1629744 1629855 -49883729 - L2 LINE L2 -1328 1986 1875 1174 157 0 5 chrY 1630188 1630398 -49883186 + L1MA1 LINE L1 6094 6302 0 198 71 0 0 chrY 1630404 1630432 -49883152 + (CAAAA)n Simple_repeat Simple_repeat 3 30 0 4339 53 3 2 chrY 1630443 1631025 -49882559 + L1PA5 LINE L1 2954 3536 -2610 14170 49 11 3 chrY 1631027 1633569 -49880015 + L1PA5 LINE L1 3608 6154 0 264 137 0 0 chrY 1635025 1635076 -49878508 + (CAAAAA)n Simple_repeat Simple_repeat 2 52 0 1255 172 159 7 chrY 1635418 1635720 -49877864 + MER58D DNA MER1_type 3 350 -36 3358 64 2 9 chrY 1635755 1636206 -49877378 - LTR7 LTR ERV1 -2 448 1 2389 96 45 13 chrY 1636206 1636582 -49877002 - HERVH LTR ERV1 0 7713 7326 1337 153 19 0 chrY 1636584 1636800 -49876784 - HERVH LTR ERV1 -1894 5819 5600 4298 149 1 1 chrY 1636804 1637463 -49876121 - HERVH LTR ERV1 -2567 5146 4488 3261 124 6 2 chrY 1637465 1637965 -49875619 - HERVH LTR ERV1 -3720 3993 3492 844 162 20 0 chrY 1637955 1638103 -49875481 - HERVH LTR ERV1 -4423 3290 3140 * 16670 107 34 14 chrY 1638097 1641143 -49872441 - HERVH LTR ERV1 -4726 2987 1 3320 60 2 7 chrY 1641145 1641593 -49871991 - LTR7 LTR ERV1 -2 448 3 1526 205 135 29 chrY 1642297 1642740 -49870844 + LTR2B LTR ERV1 1 490 0 5048 135 30 24 chrY 1642874 1643738 -49869846 + MER4D LTR ERV1 4 872 0 2530 214 21 8 chrY 1644021 1644534 -49869050 - MLT2B1 LTR ERVL 0 520 1 375 247 52 81 chrY 1644585 1644759 -49868825 + MIR SINE MIR 69 237 -25 * 626 265 42 11 chrY 1644735 1644924 -49868660 - MIR SINE MIR 0 262 68 315 164 6 218 chrY 1645052 1645217 -49868367 - L1MC5 LINE L1 -998 6963 6834 409 259 40 53 chrY 1645218 1645465 -49868119 + L1MC5 LINE L1 6933 7176 -785 * 417 235 28 88 chrY 1645462 1645679 -49867905 + L1MC5 LINE L1 7128 7331 -630 255 103 0 0 chrY 1645777 1645816 -49867768 + (CA)n Simple_repeat Simple_repeat 2 40 0 640 198 5 64 chrY 1645830 1646032 -49867552 + L1MC5 LINE L1 7716 7905 -56 286 297 51 72 chrY 1646629 1646824 -49866760 - MIR SINE MIR 0 262 72 305 323 108 18 chrY 1647047 1647270 -49866314 + MIR SINE MIR 8 250 -12 466 310 25 39 chrY 1647273 1647476 -49866108 + MIR SINE MIR 60 259 -3 24 0 0 0 chrY 1647483 1647507 -49866077 + AT_rich Low_complexity Low_complexity 1 24 0 299 246 0 0 chrY 1648065 1648130 -49865454 + L1ME4a LINE L1 5518 5582 -539 412 196 0 18 chrY 1648148 1648260 -49865324 + GA-rich Low_complexity Low_complexity 2 111 0 976 100 0 0 chrY 1648298 1648428 -49865156 + AluSq/x SINE Alu 1 130 -183 229 68 45 0 chrY 1648428 1648472 -49865112 + (TA)n Simple_repeat Simple_repeat 2 47 0 25 0 0 0 chrY 1648472 1648497 -49865087 + AT_rich Low_complexity Low_complexity 1 25 0 351 99 78 7 chrY 1648500 1648642 -49864942 + (TA)n Simple_repeat Simple_repeat 2 153 0 1236 125 0 0 chrY 1648642 1648810 -49864774 + AluSp SINE Alu 133 300 -13 301 295 68 32 chrY 1648811 1648849 -49864735 + L1ME4a LINE L1 5609 5644 -477 1744 146 52 73 chrY 1648849 1649232 -49864352 - THE1C LTR MaLR 0 375 1 301 295 68 32 chrY 1649232 1649444 -49864140 + L1ME4a LINE L1 5644 5868 -253 263 256 66 33 chrY 1649487 1649608 -49863976 + L1ME4a LINE L1 5955 6079 -42 219 69 0 0 chrY 1649618 1649647 -49863937 + (TG)n Simple_repeat Simple_repeat 2 30 0 812 261 59 3 chrY 1650183 1650489 -49863095 + L1ME3A LINE L1 5840 6162 -8 27 29 0 0 chrY 1650947 1650981 -49862603 + AT_rich Low_complexity Low_complexity 1 34 0 460 304 94 9 chrY 1651113 1651452 -49862132 + LTR37A LTR ERV1 38 405 -21 372 211 164 20 chrY 1651471 1651623 -49861961 - L1ME4a LINE L1 -235 5886 5713 216 248 90 113 chrY 1651651 1651784 -49861800 + L2 LINE L2 3183 3312 -1 497 295 96 46 chrY 1651815 1652364 -49861220 + L1ME4a LINE L1 5437 6015 -106 1066 175 19 19 chrY 1652501 1652707 -49860877 + MER34 LTR ERV1 1 206 -336 545 133 211 39 chrY 1652709 1652837 -49860747 - MER66A-int LTR ERV1 -1969 4707 4558 410 221 23 23 chrY 1652838 1652924 -49860660 - MER4D LTR ERV1 -744 159 74 1127 169 0 101 chrY 1652927 1653205 -49860379 - MER66A-int LTR ERV1 -2246 4430 4181 541 169 108 97 chrY 1653226 1653421 -49860163 - MER66A-int LTR ERV1 -5452 1224 1028 2067 241 96 87 chrY 1653456 1654323 -49859261 - MER66A-int LTR ERV1 -5799 877 3 1352 206 159 37 chrY 1654326 1654769 -49858815 - MER66A LTR ERV1 0 478 97 559 157 9 61 chrY 1654856 1654971 -49858613 + MER34 LTR ERV1 431 539 -3 2616 135 8 8 chrY 1655166 1655825 -49857759 + MER34-int LTR ERV1 106 806 -6731 1605 189 4 0 chrY 1655818 1656082 -49857502 + MER57A-int LTR ERV1 361 625 -5321 * 21339 133 13 22 chrY 1656073 1659641 -49853943 + MER57A-int LTR ERV1 1705 5238 -2299 4703 137 7 0 chrY 1659635 1660345 -49853239 + MER57A-int LTR ERV1 6432 7146 -391 * 652 154 32 8 chrY 1660347 1660470 -49853114 + LTR54B LTR ERV1 3 128 -370 1436 112 125 0 chrY 1660470 1660702 -49852882 + MER57A-int LTR ERV1 7272 7532 -5 2173 178 13 0 chrY 1660706 1661104 -49852480 + MER57A LTR ERV1 1 403 0 599 311 0 24 chrY 1661857 1662024 -49851560 + MIR SINE MIR 44 206 -56 2304 192 70 2 chrY 1662120 1662621 -49850963 - MER34C LTR ERV1 -46 539 5 3381 167 25 76 chrY 1662625 1662642 -49850942 - L1MC1 LINE L1 -181 6152 6136 2303 141 11 8 chrY 1662642 1663005 -49850579 - THE1B LTR MaLR 0 364 1 3381 167 25 76 chrY 1663005 1663351 -49850233 - L1MC1 LINE L1 -197 6136 5844 2014 156 10 0 chrY 1663351 1663658 -49849926 - AluSx SINE Alu -2 310 1 3381 167 25 76 chrY 1663658 1664041 -49849543 - L1MC1 LINE L1 -489 5844 5443 2154 220 34 51 chrY 1664254 1664781 -49848803 + MER73 LTR ERVL 127 644 0 389 244 35 12 chrY 1664799 1664971 -49848613 + (TA)n Simple_repeat Simple_repeat 1 176 0 187 317 0 0 chrY 1665060 1665101 -49848483 + L2 LINE L2 3251 3291 -22 21 36 0 0 chrY 1665948 1665976 -49847608 + AT_rich Low_complexity Low_complexity 1 28 0 182 341 61 37 chrY 1666560 1666642 -49846942 + MIR SINE MIR 58 141 -67 32 26 0 0 chrY 1666973 1667012 -49846572 + AT_rich Low_complexity Low_complexity 1 39 0 244 246 14 35 chrY 1667173 1667315 -49846269 + (TATAA)n Simple_repeat Simple_repeat 1 139 0 * 301 219 59 6 chrY 1667290 1667516 -49846068 + (TA)n Simple_repeat Simple_repeat 1 238 0 47 0 0 0 chrY 1667528 1667575 -49846009 + AT_rich Low_complexity Low_complexity 1 47 0 1176 158 19 10 chrY 1667619 1667828 -49845756 - MER61A LTR ERV1 0 343 133 4427 207 43 3 chrY 1667828 1668774 -49844810 - L1PA12 LINE L1 -3490 4094 3111 4917 266 32 36 chrY 1668787 1670784 -49842800 - L1PA12 LINE L1 -4643 2938 528 3164 178 4 2 chrY 1670787 1671288 -49842296 - L1PA12 LINE L1 -7077 504 3 553 161 0 11 chrY 1671489 1671582 -49842002 + LTR59 LTR ERV1 1 92 -505 1772 177 0 19 chrY 1671583 1671893 -49841691 + MER72 LTR ERV1 155 458 -264 1004 201 80 0 chrY 1671893 1672159 -49841425 - L1M2 LINE L1 -753 5393 5150 2065 203 30 14 chrY 1672162 1672600 -49840984 + L1MB1 LINE L1 5655 6099 -69 921 207 23 54 chrY 1672600 1672912 -49840672 - MER2 DNA MER2_type 0 345 2 414 136 0 62 chrY 1672913 1672994 -49840590 + L1MB1 LINE L1 6098 6173 -16 1746 272 90 140 chrY 1672995 1674002 -49839582 - L2 LINE L2 -137 3176 2257 241 254 60 15 chrY 1674002 1674069 -49839515 + MER112 DNA MER1_type 2 71 -189 1746 272 90 140 chrY 1674069 1675055 -49838529 - L2 LINE L2 -1056 2257 1223 2322 91 3 0 chrY 1675361 1675658 -49837926 + AluSc SINE Alu 1 298 -11 308 250 12 12 chrY 1676282 1676362 -49837222 - MIR SINE MIR -71 191 112 26 0 0 0 chrY 1676909 1676935 -49836649 + AT_rich Low_complexity Low_complexity 1 26 0 401 312 53 11 chrY 1677035 1677224 -49836360 + L1ME4a LINE L1 5631 5827 -294 7477 206 16 30 chrY 1677310 1679095 -49834489 + L1M1 LINE L1 15 1776 -5789 2140 229 53 9 chrY 1679096 1679677 -49833907 - L1M4 LINE L1 -745 5637 5031 1056 229 40 112 chrY 1679678 1680079 -49833505 + MLT1A2 LTR MaLR 3 374 0 2225 229 36 0 chrY 1680079 1680582 -49833002 + MLT1A2-int LTR MaLR 1 521 -1214 6107 105 7 24 chrY 1680602 1682505 -49831079 - L1PA10 LINE L1 0 6168 4268 4247 88 2 4 chrY 1682505 1683061 -49830523 + HERVL LTR ERVL 2401 2955 -2699 1692 96 0 0 chrY 1683061 1683280 -49830304 + MLT2A1 LTR ERVL 145 363 -81 549 0 0 0 chrY 1683281 1683342 -49830242 + (TAGA)n Simple_repeat Simple_repeat 2 62 0 281 0 108 0 chrY 1683342 1683379 -49830205 + MLT2A1 LTR ERVL 404 444 0 470 134 24 0 chrY 1683379 1683461 -49830123 - L1PA10 LINE L1 -1873 4273 4190 1640 213 0 16 chrY 1683483 1683793 -49829791 + AluJo SINE Alu 3 307 -5 451 280 0 89 chrY 1683801 1683969 -49829615 + MLT1A2-int LTR MaLR 555 707 -664 1872 261 30 54 chrY 1684173 1684798 -49828786 + MLT1A2-int LTR MaLR 1126 1735 0 528 276 47 12 chrY 1684798 1684968 -49828616 + MLT1A2 LTR MaLR 1 176 -189 1027 234 28 3 chrY 1684979 1685300 -49828284 - L1M4 LINE L1 -1542 4840 4512 207 0 0 0 chrY 1685313 1685336 -49828248 + (TG)n Simple_repeat Simple_repeat 2 24 0 2968 256 84 46 chrY 1685379 1686370 -49827214 - L1M4 LINE L1 -3344 3038 2085 1649 203 102 2 chrY 1686370 1686764 -49826820 - Tigger2a DNA MER2_type -1 433 1 2968 256 84 46 chrY 1686764 1686935 -49826649 - L1M4 LINE L1 -4297 2085 1922 1562 239 10 32 chrY 1686935 1687163 -49826421 - MSTD LTR MaLR -4 392 175 2388 76 0 13 chrY 1687163 1687298 -49826286 + AluY SINE Alu 1 136 -175 2552 67 0 3 chrY 1687298 1687610 -49825974 + AluY SINE Alu 1 311 0 2388 76 0 13 chrY 1687610 1687778 -49825806 + AluY SINE Alu 136 300 -11 1562 239 10 32 chrY 1687778 1687950 -49825634 - MSTD LTR MaLR -221 175 1 2968 256 84 46 chrY 1687950 1688488 -49825096 - L1M4 LINE L1 -4460 1922 1405 1906 230 47 5 chrY 1688488 1688897 -49824687 + MSTB LTR MaLR 1 426 0 2968 256 84 46 chrY 1688897 1689350 -49824234 - L1M4 LINE L1 -4977 1405 813 2792 13 0 0 chrY 1689523 1689831 -49823753 - AluYb8 SINE Alu -10 308 1 444 108 0 0 chrY 1690356 1690421 -49823163 - AluJ/FLAM SINE Alu -247 65 1 7496 233 25 15 chrY 1690425 1692052 -49821532 - L1P LINE L1 -825 5321 3672 258 81 0 0 chrY 1692052 1692089 -49821495 + (TG)n Simple_repeat Simple_repeat 2 38 0 7496 233 25 15 chrY 1692089 1692407 -49821177 - L1P LINE L1 -2474 3672 3358 31 0 0 0 chrY 1694664 1694695 -49818889 + AT_rich Low_complexity Low_complexity 1 31 0 24 0 0 0 chrY 1694712 1694736 -49818848 + AT_rich Low_complexity Low_complexity 1 24 0 336 143 0 0 chrY 1694871 1694927 -49818657 + (CA)n Simple_repeat Simple_repeat 1 56 0 1065 222 60 4 chrY 1694946 1695194 -49818390 - MLT2C1 LTR ERVL -48 349 88 21 0 0 0 chrY 1696158 1696179 -49817405 + AT_rich Low_complexity Low_complexity 1 21 0 816 267 0 42 chrY 1696255 1696446 -49817138 - MER5A DNA MER1_type 0 189 7 400 257 0 50 chrY 1696556 1696657 -49816927 - MER5B DNA MER1_type 0 178 83 6637 83 24 0 chrY 1696659 1697626 -49815958 - L1PA8 LINE L1 -7 6165 5192 7809 124 6 0 chrY 1697630 1698843 -49814741 + L1PA8 LINE L1 3985 5204 -942 42758 53 3 1 chrY 1699010 1705148 -49808436 + L1PA4 LINE L1 1 6152 -3 12615 188 40 7 chrY 1705617 1711801 -49801783 - L1PB2 LINE L1 -7 6860 472 313 282 0 24 chrY 1711807 1711892 -49801692 - MER20 DNA MER1_type -57 162 80 1990 152 3 7 chrY 1712559 1712862 -49800722 + AluSx SINE Alu 1 302 -10 1514 217 3 20 chrY 1713276 1713576 -49800008 + AluJo SINE Alu 3 297 -15 1858 152 40 37 chrY 1713601 1713975 -49799609 - THE1C LTR MaLR 0 375 1 3797 213 30 11 chrY 1714312 1715446 -49798138 - L1PB4 LINE L1 -2 7216 6057 1894 231 14 19 chrY 1715449 1715865 -49797719 + MSTB LTR MaLR 3 416 -10 3086 230 35 5 chrY 1715873 1716824 -49796760 - L1PB4 LINE L1 -1153 6055 5045 * 3741 258 18 43 chrY 1716795 1717294 -49796290 - L1PB4 LINE L1 -2834 4374 3864 7260 45 28 0 chrY 1717294 1718167 -49795417 + MER11D LTR ERVK 1 897 0 3741 258 18 43 chrY 1718167 1718236 -49795348 - L1PB4 LINE L1 -3344 3864 3795 2322 95 3 0 chrY 1718236 1718532 -49795052 + AluSp SINE Alu 1 297 -16 3741 258 18 43 chrY 1718532 1719638 -49793946 - L1PB4 LINE L1 -3413 3795 2789 949 145 22 112 chrY 1719640 1719819 -49793765 + MSTA LTR MaLR 1 163 -263 528 209 0 0 chrY 1719835 1719950 -49793634 - L1 LINE L1 -3598 3610 3496 26 0 0 0 chrY 1719950 1719976 -49793608 + AT_rich Low_complexity Low_complexity 1 26 0 1234 183 35 0 chrY 1719976 1720205 -49793379 + MSTA LTR MaLR 192 428 0 5922 186 15 32 chrY 1720249 1721423 -49792161 + MSTA-int LTR MaLR 427 1580 0 2410 172 19 9 chrY 1721423 1721847 -49791737 + MSTA LTR MaLR 1 428 0 2584 250 25 20 chrY 1721847 1722723 -49790861 - L1PB4 LINE L1 -4506 2703 1824 683 391 18 39 chrY 1722731 1723189 -49790395 - L1PB4 LINE L1 -5602 1607 1160 1828 307 68 16 chrY 1723815 1724509 -49789075 - L1PB4 LINE L1 -6476 733 4 365 289 78 35 chrY 1724544 1724776 -49788808 - L1ME LINE L1 -342 5779 5538 372 342 34 34 chrY 1725147 1725381 -49788203 - LTR16C LTR ERVL -6 485 252 23584 177 17 21 chrY 1727391 1731299 -49782285 + L1PA10 LINE L1 1 3924 -2559 3667 174 62 30 chrY 1731299 1732054 -49781530 + LTR19C LTR ERV1 1 779 0 23584 177 17 21 chrY 1732054 1732204 -49781380 + L1PA10 LINE L1 3924 4073 -2410 2124 135 48 25 chrY 1732204 1732560 -49781024 + THE1B LTR MaLR 1 364 0 10082 117 28 12 chrY 1732560 1734115 -49779469 + THE1B-int LTR MaLR 1 1580 0 1849 158 47 44 chrY 1734116 1734478 -49779106 + THE1B LTR MaLR 2 364 0 23584 177 17 21 chrY 1734478 1736910 -49776674 + L1PA10 LINE L1 4071 6472 -11 25 31 0 0 chrY 1737160 1737192 -49776392 + AT_rich Low_complexity Low_complexity 1 32 0 2651 283 53 52 chrY 1737432 1738168 -49775416 - L1MEc LINE L1 -2172 4043 3309 1994 112 4 0 chrY 1738168 1738484 -49775100 - AluSq SINE Alu 0 323 7 2651 283 53 52 chrY 1738484 1740133 -49773451 - L1MEc LINE L1 -2906 3309 1686 8895 202 20 32 chrY 1740251 1741076 -49772508 - L1PA15 LINE L1 -12 6153 5320 2212 78 0 3 chrY 1741076 1741415 -49772169 - AluY SINE Alu 0 338 1 8895 202 20 32 chrY 1741415 1743683 -49769901 - L1PA15 LINE L1 -845 5320 3061 7768 66 4 12 chrY 1743683 1744703 -49768881 + MER11C LTR ERVK 1 1012 -59 385 319 42 7 chrY 1746615 1746759 -49766825 + MIR SINE MIR 3 151 -111 250 328 93 49 chrY 1747050 1747297 -49766287 + LTR16B LTR ERVL 57 314 -150 1598 306 20 30 chrY 1748189 1748728 -49764856 + HERV16 LTR ERVL 894 1427 -3569 280 254 34 0 chrY 1748778 1748896 -49764688 + (TA)n Simple_repeat Simple_repeat 1 122 0 1905 142 16 13 chrY 1749018 1749329 -49764255 - AluJb SINE Alu 0 312 1 16272 190 52 10 chrY 1751427 1758804 -49754780 - L1MA2 LINE L1 -19 7704 12 2206 119 0 3 chrY 1758881 1759191 -49754393 - AluSx SINE Alu -2 310 2 1220 188 164 21 chrY 1759466 1759753 -49753831 - MLT1A1 LTR MaLR -32 333 6 846 240 23 46 chrY 1759877 1760094 -49753490 + MIR SINE MIR 36 247 -15 3392 64 9 0 chrY 1760219 1760659 -49752925 + L1PA7 LINE L1 5711 6154 0 24 0 0 0 chrY 1760695 1760719 -49752865 + AT_rich Low_complexity Low_complexity 1 24 0 207 0 0 0 chrY 1760721 1760744 -49752840 + (TAAAAA)n Simple_repeat Simple_repeat 1 23 0 27 29 0 0 chrY 1761388 1761422 -49752162 + AT_rich Low_complexity Low_complexity 1 34 0 1706 129 5 74 chrY 1761732 1762103 -49751481 - MER4A LTR ERV1 0 664 261 551 134 21 10 chrY 1762103 1762200 -49751384 - MER4A LTR ERV1 -566 98 1 226 263 63 63 chrY 1763567 1763662 -49749922 + MIR SINE MIR 51 145 -63 312 361 0 13 chrY 1763830 1763988 -49749596 + MER117 DNA MER1_type 11 166 -31 387 359 128 24 chrY 1764730 1764876 -49748708 + L2 LINE L2 1811 1940 -1374 2275 140 146 91 chrY 1764876 1765505 -49748079 + MER4A LTR ERV1 1 664 0 387 359 128 24 chrY 1765505 1765779 -49747805 + L2 LINE L2 1940 2275 -1039 2604 99 19 140 chrY 1766517 1767032 -49746552 + MLT2A2 LTR ERVL 1 453 0 2045 300 25 16 chrY 1767329 1768000 -49745584 + L2 LINE L2 2035 2711 -603 682 218 21 0 chrY 1768138 1768280 -49745304 - MLT2A2 LTR ERVL 0 453 309 311 286 17 34 chrY 1768989 1769167 -49744417 - L1M4 LINE L1 -866 5280 5106 4579 56 8 7 chrY 1770046 1770636 -49742948 - LTR10C LTR ERV1 0 591 1 250 183 28 0 chrY 1770953 1771024 -49742560 + (CA)n Simple_repeat Simple_repeat 2 74 0 502 283 97 37 chrY 1772443 1772852 -49740732 - MLT1L LTR MaLR -7 608 109 1509 202 46 0 chrY 1772927 1773044 -49740540 + AluJb SINE Alu 4 114 -198 180 0 0 0 chrY 1773044 1773064 -49740520 + (TAAAA)n Simple_repeat Simple_repeat 2 21 0 1509 202 46 0 chrY 1773064 1773228 -49740356 + AluJb SINE Alu 114 298 -14 33 43 0 0 chrY 1774032 1774079 -49739505 + AT_rich Low_complexity Low_complexity 1 47 0 212 220 0 20 chrY 1774963 1775013 -49738571 + (TA)n Simple_repeat Simple_repeat 2 50 0 715 164 176 4 chrY 1775013 1775178 -49738406 + MLT1B LTR MaLR 2 179 -195 789 283 64 32 chrY 1775190 1775722 -49737862 - MLT1G1 LTR MaLR 0 595 4 1627 144 186 45 chrY 1777040 1777394 -49736190 - MER4A LTR ERV1 0 664 261 693 91 0 10 chrY 1777394 1777493 -49736091 - MER4A LTR ERV1 -566 98 1 28 48 0 0 chrY 1777866 1777908 -49735676 + AT_rich Low_complexity Low_complexity 1 42 0 393 176 0 12 chrY 1778059 1778144 -49735440 - pTR5 LTR ERV1 -1237 1201 1118 4901 109 28 65 chrY 1778301 1779154 -49734430 + LTR12 LTR ERV1 5 826 0 2908 187 34 5 chrY 1779154 1779774 -49733810 + L1P LINE L1 4721 5361 -785 * 3794 247 46 3 chrY 1779773 1780826 -49732758 - L1PA13 LINE L1 -4413 2384 1278 1385 245 55 54 chrY 1780863 1781566 -49732018 - L1M4c LINE L1 -2465 3917 3214 316 286 9 19 chrY 1781567 1781672 -49731912 - L1M4c LINE L1 -4279 2105 2002 3014 258 55 38 chrY 1781676 1782872 -49730712 - L1M4c LINE L1 -4497 1887 665 1983 212 52 50 chrY 1782872 1782916 -49730668 - MLT2B1 LTR ERVL 0 520 478 351 0 0 0 chrY 1782916 1782955 -49730629 + (CA)n Simple_repeat Simple_repeat 2 40 0 1983 212 52 50 chrY 1782955 1783429 -49730155 - MLT2B1 LTR ERVL -42 478 1 3014 258 55 38 chrY 1783429 1783559 -49730025 - L1M4c LINE L1 -5719 665 539 1188 148 0 0 chrY 1784061 1784237 -49729347 + AluSq SINE Alu 38 213 -100 357 301 161 16 chrY 1784572 1784765 -49728819 - MIR SINE MIR 0 262 42 317 314 57 21 chrY 1785134 1785274 -49728310 + MIR SINE MIR 31 175 -87 553 268 11 112 chrY 1785293 1785569 -49728015 + MER21B LTR ERV1 1 248 -615 399 159 0 0 chrY 1785574 1785643 -49727941 + L1MA5 LINE L1 6147 6215 -85 1147 259 71 69 chrY 1785643 1785914 -49727670 + MER21B LTR ERV1 253 527 -336 2090 136 3 0 chrY 1785914 1786223 -49727361 - AluSx SINE Alu -2 310 1 1147 259 71 69 chrY 1786223 1786456 -49727128 + MER21B LTR ERV1 527 758 -105 2167 121 3 6 chrY 1787729 1788042 -49725542 - AluSx SINE Alu 0 312 1 2410 88 3 0 chrY 1788184 1788490 -49725094 + AluSp SINE Alu 3 309 -4 4026 188 47 12 chrY 1788669 1789131 -49724453 - L1PA16 LINE L1 -12 6154 5647 2216 110 0 0 chrY 1789131 1789421 -49724163 + AluSq SINE Alu 1 290 -23 4026 188 47 12 chrY 1789421 1789802 -49723782 - L1PA16 LINE L1 -519 5647 5281 509 173 0 0 chrY 1789802 1789906 -49723678 + L1PA16 LINE L1 5174 5277 -869 318 78 20 20 chrY 1789927 1789978 -49723606 + MER4A LTR ERV1 48 98 -566 1469 152 16 80 chrY 1789978 1790286 -49723298 + MER4A LTR ERV1 261 602 -62 1933 110 55 14 chrY 1790286 1790577 -49723007 - AluSc SINE Alu -6 303 1 1469 152 16 80 chrY 1790577 1790637 -49722947 + MER4A LTR ERV1 602 664 0 1773 312 24 17 chrY 1790637 1790914 -49722670 - L1PA12 LINE L1 -4651 2930 2656 3201 74 2 22 chrY 1790914 1791371 -49722213 - LTR7 LTR ERV1 -2 448 1 1773 312 24 17 chrY 1791371 1791840 -49721744 - L1PA12 LINE L1 -4925 2656 2179 2340 55 3 10 chrY 1792129 1792422 -49721162 - AluY SINE Alu -20 291 1 448 299 86 11 chrY 1792612 1792786 -49720798 + L2 LINE L2 3094 3280 -33 611 268 85 0 chrY 1793077 1793230 -49720354 - MER5B DNA MER1_type -12 166 1 2828 216 76 6 chrY 1793284 1793482 -49720102 - L1MB7 LINE L1 -8 6176 5993 183 42 0 0 chrY 1793482 1793506 -49720078 + (TTG)n Simple_repeat Simple_repeat 1 24 0 2828 216 76 6 chrY 1793506 1794001 -49719583 - L1MB7 LINE L1 -191 5993 5434 2276 116 0 0 chrY 1794491 1794801 -49718783 + AluSg SINE Alu 1 310 0 447 206 131 0 chrY 1794911 1795018 -49718566 - L1PA15 LINE L1 -4 6161 6041 1833 148 70 25 chrY 1795020 1795377 -49718207 - THE1C LTR MaLR 0 375 3 1988 103 6 29 chrY 1795377 1795689 -49717895 - THE1C-int LTR MaLR -1 1579 1275 5791 115 10 18 chrY 1795697 1797153 -49716431 - L1PA11 LINE L1 -1 6173 4703 5059 149 5 2 chrY 1797153 1797996 -49715588 + L1PA11 LINE L1 3837 4681 -1465 2523 160 10 0 chrY 1798005 1798412 -49715172 - THE1C-int LTR MaLR -303 1277 867 492 176 46 9 chrY 1798417 1798525 -49715059 + MSTB1-int LTR MaLR 1539 1650 -1 1834 175 108 5 chrY 1798529 1798918 -49714666 + MSTB1 LTR MaLR 4 432 0 520 246 0 0 chrY 1798922 1799036 -49714548 + MER77 LTR ERV1 426 539 -66 1162 254 73 51 chrY 1799099 1799697 -49713887 + L1MC4 LINE L1 6458 7089 -953 4348 163 25 6 chrY 1799816 1800620 -49712964 - L1PB2 LINE L1 0 6151 5333 603 122 10 10 chrY 1800620 1800718 -49712866 + MER4A LTR ERV1 1 98 -566 1310 155 47 46 chrY 1800718 1801059 -49712525 + MER4A LTR ERV1 261 660 -4 9320 137 139 60 chrY 1801065 1803613 -49709971 + MER4A-int LTR ERV1 1 2485 -4113 5593 134 55 17 chrY 1803609 1804604 -49708980 + MER4A-int LTR ERV1 5516 6548 -50 * 405 0 0 0 chrY 1804604 1804649 -49708935 + (A)n Simple_repeat Simple_repeat 1 45 0 496 188 10 10 chrY 1804682 1804778 -49708806 + MER4A LTR ERV1 1 96 -568 1846 144 3 24 chrY 1804780 1805133 -49708451 + MER4A LTR ERV1 261 664 0 837 232 0 5 chrY 1805140 1805364 -49708220 - L1PB2 LINE L1 -817 5329 5107 1611 193 174 0 chrY 1805371 1805479 -49708105 + MSTA LTR MaLR 1 89 -339 287 25 25 0 chrY 1805479 1805519 -49708065 + (TGAG)n Simple_repeat Simple_repeat 3 43 0 1611 193 174 0 chrY 1805519 1805773 -49707811 + MSTA LTR MaLR 89 426 -2 6212 213 36 15 chrY 1805775 1805857 -49707727 + MSTA-int LTR MaLR 1 80 -1571 2365 89 0 3 chrY 1805857 1806159 -49707425 + AluY SINE Alu 2 302 -9 6212 213 36 15 chrY 1806159 1807363 -49706221 + MSTA-int LTR MaLR 80 1314 -337 5098 73 0 12 chrY 1807363 1808019 -49705565 - LTR17 LTR ERV1 0 780 133 2060 143 6 23 chrY 1808019 1808235 -49705349 + MSTA-int LTR MaLR 1316 1525 -126 2413 108 128 5 chrY 1808235 1808634 -49704950 - LTR7 LTR ERV1 -2 448 1 2060 143 6 23 chrY 1808634 1808759 -49704825 + MSTA-int LTR MaLR 1525 1651 0 2208 182 39 0 chrY 1808759 1809171 -49704413 + MSTA LTR MaLR 1 428 0 8202 234 24 37 chrY 1809188 1809362 -49704222 - L1PB2 LINE L1 -1059 5087 4912 2142 136 0 3 chrY 1809362 1809672 -49703912 - AluSx SINE Alu -1 311 3 8202 234 24 37 chrY 1809672 1810124 -49703460 - L1PB2 LINE L1 -1234 4912 4456 1984 148 0 0 chrY 1810124 1810429 -49703155 - AluY SINE Alu -6 305 1 8202 234 24 37 chrY 1810429 1812300 -49701284 - L1PB2 LINE L1 -1690 4456 2622 320 234 47 19 chrY 1812830 1812937 -49700647 + LTR43 LTR ERV1 187 296 -306 9873 270 29 33 chrY 1812993 1816355 -49697229 + L1PA13 LINE L1 1 3358 -4226 11623 213 8 29 chrY 1816355 1818600 -49694984 + L1PA13 LINE L1 3953 6179 -1422 183 42 0 0 chrY 1818600 1818624 -49694960 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 11623 213 8 29 chrY 1818624 1820018 -49693566 + L1PA13 LINE L1 6179 7601 0 9873 270 29 33 chrY 1820018 1820030 -49693554 + L1PA13 LINE L1 3358 3369 -4215 2138 74 30 17 chrY 1820940 1821239 -49692345 + AluY SINE Alu 1 303 -8 1461 277 103 15 chrY 1822334 1822944 -49690640 - L1MC4 LINE L1 -132 7910 7247 1211 258 16 0 chrY 1822953 1823271 -49690313 - L1MC4 LINE L1 -953 7089 6767 341 257 56 23 chrY 1823272 1823400 -49690184 - L1MD3 LINE L1 -1431 6564 6446 1659 254 39 34 chrY 1824019 1824662 -49688922 + L1MC4 LINE L1 7265 7910 -132 231 183 33 0 chrY 1824665 1824767 -49688817 + (TA)n Simple_repeat Simple_repeat 1 105 0 33 56 0 0 chrY 1824842 1824896 -49688688 + AT_rich Low_complexity Low_complexity 1 54 0 4699 127 21 3 chrY 1824954 1825709 -49687875 + L1MA2 LINE L1 5535 6303 -1 232 385 58 0 chrY 1825719 1825875 -49687709 - L3b LINE CR1 -202 1381 1217 33 43 0 0 chrY 1825958 1826005 -49687579 + AT_rich Low_complexity Low_complexity 1 47 0 50 18 0 0 chrY 1826119 1826176 -49687408 + AT_rich Low_complexity Low_complexity 1 57 0 2504 53 3 7 chrY 1826489 1826791 -49686793 - AluSp SINE Alu -12 301 1 205 162 0 0 chrY 1826821 1826858 -49686726 + (TG)n Simple_repeat Simple_repeat 2 38 0 319 260 57 8 chrY 1827321 1827444 -49686140 - HAL1b LINE L1 -11 1337 1209 308 312 72 51 chrY 1827543 1827835 -49685749 - L1MD3 LINE L1 -1897 5911 5614 21 0 0 0 chrY 1828590 1828611 -49684973 + AT_rich Low_complexity Low_complexity 1 21 0 2202 107 0 3 chrY 1828906 1829206 -49684378 + AluSx SINE Alu 1 299 -13 188 111 28 0 chrY 1829463 1829499 -49684085 + T-rich Low_complexity Low_complexity 2 38 0 272 172 0 16 chrY 1829499 1829563 -49684021 + CT-rich Low_complexity Low_complexity 2 64 0 238 250 36 77 chrY 1829845 1829936 -49683648 - L1MEd LINE L1 -4917 1202 1120 1933 169 14 14 chrY 1829936 1830284 -49683300 + MER7A DNA MER2_type 1 346 0 238 250 36 77 chrY 1830284 1830360 -49683224 - L1MEd LINE L1 -4999 1120 1042 2206 98 7 0 chrY 1830382 1830677 -49682907 - AluSp SINE Alu -16 297 1 286 224 0 24 chrY 1830695 1830780 -49682804 + (TCTA)n Simple_repeat Simple_repeat 4 86 0 272 211 11 106 chrY 1830862 1831042 -49682542 - L1MEd LINE L1 -5188 931 769 722 104 157 0 chrY 1831102 1831217 -49682367 - AluSq/x SINE Alu -180 133 1 658 79 0 0 chrY 1831822 1831911 -49681673 - L1PBa LINE L1 -4657 2206 2118 * 15163 145 22 90 chrY 1831909 1835306 -49678278 - L1P LINE L1 -2969 3177 12 21 0 0 0 chrY 1835452 1835473 -49678111 + AT_rich Low_complexity Low_complexity 1 21 0 5337 169 22 20 chrY 1835474 1836139 -49677445 - L1MA5A LINE L1 -4 6293 5624 1692 153 0 0 chrY 1836139 1836387 -49677197 - AluSq SINE Alu -65 248 1 5337 169 22 20 chrY 1836387 1836748 -49676836 - L1MA5A LINE L1 -673 5624 5265 3089 172 24 15 chrY 1836761 1837431 -49676153 - L1MA5A LINE L1 -1129 5017 4342 21 0 0 0 chrY 1837482 1837503 -49676081 + AT_rich Low_complexity Low_complexity 1 21 0 29847 112 16 47 chrY 1838821 1844766 -49668818 + L1P3 LINE L1 1 5763 -724 569 171 0 18 chrY 1844798 1844909 -49668675 - L1MD3 LINE L1 -999 6996 6888 365 136 15 0 chrY 1844910 1844976 -49668608 + CT-rich Low_complexity Low_complexity 4 70 0 302 258 100 68 chrY 1844976 1845166 -49668418 - L1MC3 LINE L1 -1107 6678 6483 2986 268 57 36 chrY 1845177 1847397 -49666187 - L1MC3 LINE L1 -743 5403 4017 442 184 68 60 chrY 1847570 1847739 -49665845 - L1ME LINE L1 -642 5522 5345 5330 104 8 5 chrY 1849654 1850432 -49663152 + L1PA10 LINE L1 5389 6168 0 21 0 0 0 chrY 1850485 1850506 -49663078 + AT_rich Low_complexity Low_complexity 1 21 0 2260 192 66 25 chrY 1851040 1851633 -49661951 + pTR5 LTR ERV1 729 1345 -1093 4558 111 21 117 chrY 1851648 1852557 -49661027 + LTR12 LTR ERV1 5 826 0 25 90 0 0 chrY 1852941 1853008 -49660576 + AT_rich Low_complexity Low_complexity 1 67 0 25 31 0 0 chrY 1854200 1854232 -49659352 + AT_rich Low_complexity Low_complexity 1 32 0 21 57 0 0 chrY 1855772 1855807 -49657777 + AT_rich Low_complexity Low_complexity 1 35 0 271 300 33 50 chrY 1855997 1856117 -49657467 + MER77 LTR ERV1 68 185 -420 593 241 33 71 chrY 1856162 1856379 -49657205 + MER21B LTR ERV1 142 354 -251 2688 138 37 16 chrY 1856379 1856967 -49656617 + MER4B LTR ERV1 1 779 0 5758 136 92 37 chrY 1856967 1857613 -49655971 + MER4B-int LTR ERV1 1 734 -6024 7403 145 16 25 chrY 1857613 1858900 -49654684 - MER52C LTR ERV1 -2 1276 1 5758 136 92 37 chrY 1858900 1859345 -49654239 + MER4B-int LTR ERV1 734 1153 -5605 294 73 0 0 chrY 1859348 1859389 -49654195 + (TG)n Simple_repeat Simple_repeat 2 42 0 3185 106 70 42 chrY 1859394 1859872 -49653712 + MER4B-int LTR ERV1 1458 1921 -4677 2677 93 3 0 chrY 1859872 1860226 -49653358 - THE1A LTR MaLR 0 355 1 3185 106 70 42 chrY 1860226 1860869 -49652715 + MER4B-int LTR ERV1 1921 2482 -4116 1682 145 5 77 chrY 1860869 1861241 -49652343 - MER4A LTR ERV1 0 664 261 594 113 21 10 chrY 1861241 1861338 -49652246 - MER4A LTR ERV1 -566 98 1 4357 124 45 13 chrY 1861339 1862089 -49651495 - MER4A-int LTR ERV1 0 6598 5825 311 185 0 0 chrY 1862118 1862172 -49651412 - L1PA8A LINE L1 -3 6128 6075 3269 209 31 7 chrY 1862175 1862770 -49650814 - L1MB2 LINE L1 -67 6104 5488 2242 101 6 19 chrY 1862770 1863086 -49650498 - AluSq SINE Alu -1 312 1 3269 209 31 7 chrY 1863086 1863207 -49650377 - L1MB2 LINE L1 -683 5488 5371 26 64 0 0 chrY 1863507 1863554 -49650030 + AT_rich Low_complexity Low_complexity 1 47 0 860 194 196 60 chrY 1863554 1863921 -49649663 + MSTC LTR MaLR 1 417 -11 1333 207 97 20 chrY 1864009 1864309 -49649275 - MLT1A1 LTR MaLR -42 323 1 1896 235 10 2 chrY 1864313 1864722 -49648862 - MLT1A1-int LTR MaLR -5 1730 1319 230 296 70 92 chrY 1864801 1864943 -49648641 - MLT1A1-int LTR MaLR -397 1338 1200 733 233 75 46 chrY 1864943 1865183 -49648401 + MLT1A1 LTR MaLR 119 365 0 2961 228 24 31 chrY 1865331 1865585 -49647999 - L1MB3 LINE L1 -2 6181 5927 5390 67 32 8 chrY 1865585 1866333 -49647251 + MER4E LTR ERV1 1 766 0 2961 228 24 31 chrY 1866333 1866862 -49646722 - L1MB3 LINE L1 -256 5927 5403 753 255 113 24 chrY 1866884 1867256 -49646328 - L1MB3 LINE L1 -1458 4688 4284 350 257 0 0 chrY 1867270 1867340 -49646244 + FRAM/FAM SINE Alu 1 70 -105 366 23 0 0 chrY 1867357 1867400 -49646184 + (CA)n Simple_repeat Simple_repeat 2 44 0 5036 259 35 21 chrY 1867400 1869452 -49644132 - L1 LINE L1 -2328 4520 2458 1996 168 53 26 chrY 1869452 1869869 -49643715 - MSTA LTR MaLR 0 428 1 8724 186 16 13 chrY 1869871 1871514 -49642070 - MSTA-int LTR MaLR -2 1649 2 2078 131 22 6 chrY 1871515 1871834 -49641750 - MSTA LTR MaLR 0 428 105 2614 99 42 5 chrY 1871834 1872218 -49641366 + MLT2A1 LTR ERVL 1 398 -46 353 231 0 0 chrY 1872226 1872291 -49641293 + MST-int LTR MaLR 1095 1159 -492 228 86 0 0 chrY 1872297 1872332 -49641252 + (TA)n Simple_repeat Simple_repeat 1 35 0 309 24 0 24 chrY 1872332 1872373 -49641211 + MLT2A2 LTR ERVL 414 453 0 * 547 171 43 3 chrY 1872373 1872476 -49641108 - MSTA LTR MaLR -249 115 3 4077 221 37 31 chrY 1872479 1873653 -49639931 - L1PA15-16 LINE L1 -4387 3197 2017 431 290 77 18 chrY 1873655 1873824 -49639760 - L1PA15-16 LINE L1 -5672 1913 1735 295 337 87 53 chrY 1873994 1874258 -49639326 - L1M2 LINE L1 -5781 1804 1532 306 328 106 88 chrY 1874265 1874585 -49638999 - L1M2 LINE L1 -5986 1599 1274 1134 303 31 36 chrY 1875288 1875775 -49637809 - L1M2 LINE L1 -6411 1174 6 1664 228 20 12 chrY 1875783 1876182 -49637402 - L1MCa LINE L1 -6005 421 20 2263 233 56 10 chrY 1876311 1877012 -49636572 - L1MB8 LINE L1 -246 5932 5208 514 263 17 56 chrY 1877088 1877267 -49636317 + MLT1A1 LTR MaLR 25 196 -169 817 250 46 5 chrY 1877284 1877480 -49636104 + MLT1A1 LTR MaLR 162 365 0 44 88 0 0 chrY 1879145 1879259 -49634325 + AT_rich Low_complexity Low_complexity 1 114 0 3840 218 40 30 chrY 1879263 1880955 -49632629 + L1MB3 LINE L1 4077 5786 -394 1718 206 9 15 chrY 1880957 1881297 -49632287 + MER2 DNA MER2_type 3 340 -5 1840 133 41 85 chrY 1881299 1881711 -49631873 + L1MB3 LINE L1 5783 6176 -7 616 285 59 14 chrY 1881953 1882174 -49631410 - MIR SINE MIR -26 236 6 257 327 154 13 chrY 1882171 1882327 -49631257 - MIR SINE MIR -67 195 18 * 328 315 65 74 chrY 1882498 1882822 -49630762 + L1M4 LINE L1 3191 3511 -2635 1593 200 15 63 chrY 1882906 1883288 -49630296 + MLT1B LTR MaLR 1 363 -27 4295 108 14 17 chrY 1883288 1883325 -49630259 - LTR9B LTR ERV1 0 644 608 2773 19 0 6 chrY 1883325 1883637 -49629947 - AluY SINE Alu -1 310 1 4295 108 14 17 chrY 1883637 1884245 -49629339 - LTR9B LTR ERV1 -36 608 1 1593 200 15 63 chrY 1884245 1884272 -49629312 + MLT1B LTR MaLR 363 390 0 1281 356 69 11 chrY 1884498 1885740 -49627844 + L1M3a LINE L1 2 847 -5108 * 1803 255 48 2 chrY 1885736 1886336 -49627248 + L1M3a LINE L1 2512 3139 -2895 451 83 0 0 chrY 1886336 1886396 -49627188 - MSTA LTR MaLR 0 428 369 1285 185 63 69 chrY 1886416 1886603 -49626981 + L1MA9 LINE L1 5626 5813 -499 2231 104 0 3 chrY 1886603 1886892 -49626692 - AluSg SINE Alu -21 289 2 1285 185 63 69 chrY 1886892 1887335 -49626249 + L1MA9 LINE L1 5813 6290 -22 369 358 74 37 chrY 1887446 1887742 -49625842 + L1M2 LINE L1 10 316 -6533 1283 99 5 38 chrY 1887752 1887964 -49625620 + L1PA11 LINE L1 5970 6174 0 270 111 0 173 chrY 1887964 1888045 -49625539 + L1MA9 LINE L1 6246 6312 0 10516 231 16 4 chrY 1888048 1890704 -49622880 - L1P LINE L1 -796 5350 2662 8652 255 47 17 chrY 1890690 1893211 -49620373 - L1PA13 LINE L1 -4183 2614 1 * 417 263 32 0 chrY 1893225 1893381 -49620203 - Zaphod DNA AcHobo -2981 1050 890 24 53 0 0 chrY 1893385 1893423 -49620161 + AT_rich Low_complexity Low_complexity 1 38 0 265 224 141 12 chrY 1893673 1893758 -49619826 - MIR SINE MIR -71 191 96 364 338 32 32 chrY 1895237 1895453 -49618131 + MIR SINE MIR 40 255 -7 468 226 0 0 chrY 1896317 1896401 -49617183 - AluJ/FLAM SINE Alu -228 84 1 620 287 15 65 chrY 1896431 1896692 -49616892 - MIR SINE MIR 0 262 15 21 36 0 0 chrY 1897355 1897383 -49616201 + AT_rich Low_complexity Low_complexity 1 28 0 403 258 22 32 chrY 1897588 1897725 -49615859 + L1MC5 LINE L1 6766 6900 -908 394 255 28 75 chrY 1897749 1897961 -49615623 + L1MC5 LINE L1 6908 7109 -852 288 0 0 0 chrY 1898037 1898069 -49615515 + (TG)n Simple_repeat Simple_repeat 1 32 0 350 246 75 26 chrY 1898244 1898512 -49615072 + L1MC5 LINE L1 7472 7752 -209 908 319 60 30 chrY 1898516 1898986 -49614598 + L1PA16 LINE L1 1 484 -7097 8809 223 37 16 chrY 1898994 1902542 -49611042 + L1PA16 LINE L1 3954 7600 -4 25 0 0 0 chrY 1902563 1902588 -49610996 + AT_rich Low_complexity Low_complexity 1 25 0 214 210 113 32 chrY 1902632 1902694 -49610890 - MIR SINE MIR -152 110 44 22 0 0 0 chrY 1902920 1902942 -49610642 + AT_rich Low_complexity Low_complexity 1 22 0 269 54 89 0 chrY 1903866 1903922 -49609662 - L1MA7 LINE L1 0 6291 6231 5994 128 17 14 chrY 1904166 1905151 -49608433 - L1MA2 LINE L1 0 7723 6736 183 42 0 0 chrY 1905151 1905175 -49608409 + (TTG)n Simple_repeat Simple_repeat 1 24 0 995 143 0 0 chrY 1905175 1905322 -49608262 - AluSg/x SINE Alu -31 281 135 17704 194 25 29 chrY 1905322 1906861 -49606723 - L1MA2 LINE L1 -1376 6189 4645 2087 140 0 0 chrY 1906861 1907153 -49606431 - AluSx SINE Alu -18 294 3 17704 194 25 29 chrY 1907153 1908902 -49604682 - L1MA2 LINE L1 -2920 4645 2890 198 0 0 0 chrY 1908902 1908924 -49604660 + (TTTTG)n Simple_repeat Simple_repeat 2 23 0 17704 194 25 29 chrY 1908924 1909541 -49604043 - L1MA2 LINE L1 -4675 2890 2272 2849 174 17 42 chrY 1909541 1910132 -49603452 - LTR22 LTR ERVK -4 576 1 17704 194 25 29 chrY 1910132 1910501 -49603083 - L1MA2 LINE L1 -5293 2272 1903 2294 82 0 38 chrY 1910501 1910817 -49602767 - AluY SINE Alu -7 304 1 17704 194 25 29 chrY 1910817 1912732 -49600852 - L1MA2 LINE L1 -5662 1903 22 8433 186 29 24 chrY 1912855 1914385 -49599199 - L1MA2 LINE L1 0 7723 6203 3373 196 19 80 chrY 1914385 1915416 -49598168 + LTR5 LTR ERVK 1 969 0 8433 186 29 24 chrY 1915416 1915632 -49597952 - L1MA2 LINE L1 -1520 6203 5990 1935 116 0 38 chrY 1915632 1915973 -49597611 - AluSc SINE Alu 0 330 1 8433 186 29 24 chrY 1915973 1917355 -49596229 - L1MA2 LINE L1 -1733 5990 4572 10268 169 138 9 chrY 1917371 1919540 -49594044 - L1MA2 LINE L1 -4287 3278 831 2094 157 11 16 chrY 1919540 1919904 -49593680 + THE1B LTR MaLR 1 362 -2 9663 132 34 35 chrY 1919910 1921488 -49592096 + THE1B-int LTR MaLR 6 1580 0 2297 142 11 0 chrY 1921488 1921848 -49591736 + THE1B LTR MaLR 1 364 0 3440 236 39 20 chrY 1921849 1922645 -49590939 - L1MA2 LINE L1 -6731 834 24 201 121 0 0 chrY 1922676 1922709 -49590875 + (T)n Simple_repeat Simple_repeat 1 33 0 23 33 0 0 chrY 1922848 1922878 -49590706 + AT_rich Low_complexity Low_complexity 1 30 0 350 335 20 69 chrY 1923074 1923203 -49590381 + L1MDa LINE L1 17 134 -6406 2566 61 0 3 chrY 1923203 1923514 -49590070 + AluY SINE Alu 1 310 -1 350 335 20 69 chrY 1923514 1923587 -49589997 + L1MDa LINE L1 134 209 -6331 277 301 38 30 chrY 1924155 1924288 -49589296 + L1MDa LINE L1 882 1015 -5528 438 243 2 45 chrY 1924299 1924475 -49589109 + L1MDa LINE L1 999 1167 -5363 909 269 74 37 chrY 1924518 1925194 -49588390 + L1MDa LINE L1 1296 2756 -3784 * 3878 196 37 1 chrY 1925191 1925999 -49587585 - L1P LINE L1 -1004 5142 4306 1859 101 27 20 chrY 1925988 1926285 -49587299 + L1PA13 LINE L1 5746 6044 -119 * 1988 184 28 14 chrY 1926285 1926644 -49586940 + THE1B LTR MaLR 1 364 0 10504 121 25 3 chrY 1926644 1928177 -49585407 + THE1B-int LTR MaLR 11 1580 0 2110 164 28 17 chrY 1928177 1928537 -49585047 + THE1B LTR MaLR 1 364 0 766 124 8 0 chrY 1928537 1928658 -49584926 + L1PA13 LINE L1 6040 6161 -2 3749 234 27 5 chrY 1928661 1929729 -49583855 + L1MDa LINE L1 2740 3831 -2709 * 4178 187 57 16 chrY 1929720 1930689 -49582895 + L1MA8 LINE L1 5277 6285 -6 632 294 58 10 chrY 1930692 1930985 -49582599 + L1ME1 LINE L1 1895 2201 -4339 6133 152 39 4 chrY 1931007 1932090 -49581494 + HSMAR2 DNA Mariner 180 1300 -2 4207 235 79 115 chrY 1932148 1933366 -49580218 + L1ME1 LINE L1 2415 3675 -2865 2223 106 0 0 chrY 1933366 1933659 -49579925 + AluSc SINE Alu 1 293 -16 4207 235 79 115 chrY 1933659 1933744 -49579840 + L1ME1 LINE L1 3675 3761 -2779 186 43 0 0 chrY 1933744 1933767 -49579817 + (CA)n Simple_repeat Simple_repeat 2 24 0 4207 235 79 115 chrY 1933767 1933784 -49579800 + L1ME1 LINE L1 3761 3777 -2763 817 238 6 11 chrY 1933784 1933965 -49579619 + FRAM SINE Alu 1 176 0 4207 235 79 115 chrY 1933965 1935769 -49577815 + L1ME1 LINE L1 3777 5589 -951 11411 136 6 14 chrY 1935770 1936631 -49576953 + L1PA10 LINE L1 3412 4278 -1896 2440 77 0 0 chrY 1936631 1936942 -49576642 - AluY SINE Alu 0 311 1 11411 136 6 14 chrY 1936942 1938683 -49574901 + L1PA10 LINE L1 4278 5994 -180 552 107 0 0 chrY 1938684 1938768 -49574816 + L1PA10 LINE L1 6085 6168 0 1960 263 38 87 chrY 1938771 1939777 -49573807 + L1ME1 LINE L1 5583 6541 -19 367 353 85 5 chrY 1940252 1940476 -49573108 + L1MEc LINE L1 803 1044 -5352 1395 162 20 0 chrY 1940605 1940852 -49572732 + L1PA16 LINE L1 5909 6160 -6 22 70 0 0 chrY 1940867 1940910 -49572674 + AT_rich Low_complexity Low_complexity 1 43 0 2219 237 44 4 chrY 1941282 1941785 -49571799 + Tigger7 DNA MER2_type 44 566 -1921 2204 288 93 16 chrY 1941830 1943472 -49570112 + L1M4 LINE L1 2758 4525 -1621 868 152 72 72 chrY 1943611 1943848 -49569736 - MLT1B LTR MaLR 0 390 154 768 214 17 16 chrY 1943859 1944065 -49569519 + L1ME2 LINE L1 5732 5942 -252 3887 119 58 80 chrY 1944098 1944889 -49568695 + LTR1 LTR ERV1 12 785 0 329 178 68 0 chrY 1945090 1945163 -49568421 + L1ME2 LINE L1 6078 6155 -9 21 36 0 0 chrY 1945234 1945262 -49568322 + AT_rich Low_complexity Low_complexity 1 28 0 891 261 43 4 chrY 1945262 1945496 -49568088 - MIR SINE MIR -13 249 7 301 253 13 0 chrY 1946227 1946306 -49567278 - MER116 DNA Mariner 0 80 1 6057 97 3 6 chrY 1946622 1947698 -49565886 - L1PA13 LINE L1 -1 6162 5075 352 153 0 0 chrY 1947698 1947757 -49565827 + L1M4 LINE L1 3901 3959 -2187 246 340 19 28 chrY 1948871 1948977 -49564607 - L3b LINE CR1 -87 1496 1392 1033 96 7 0 chrY 1949261 1949397 -49564187 + AluSq/x SINE Alu 1 137 -175 2040 96 7 18 chrY 1949400 1949682 -49563902 + AluSg SINE Alu 5 283 -27 2298 92 3 0 chrY 1949908 1950214 -49563370 - AluSg SINE Alu -3 307 1 3984 152 33 16 chrY 1950768 1951236 -49562348 + MER50 LTR ERV1 1 486 -248 2128 91 9 35 chrY 1951236 1951554 -49562030 + AluSx SINE Alu 1 310 -2 3984 152 33 16 chrY 1951554 1951784 -49561800 + MER50 LTR ERV1 486 711 -23 568 335 45 0 chrY 1954942 1955121 -49558463 + MIR SINE MIR 76 262 0 346 357 51 0 chrY 1956600 1956757 -49556827 - MIR SINE MIR 0 262 98 267 54 0 0 chrY 1957446 1957483 -49556101 + (CA)n Simple_repeat Simple_repeat 2 38 0 2325 241 42 2 chrY 1957596 1958115 -49555469 - LTR9B LTR ERV1 0 644 105 510 306 108 13 chrY 1958371 1958603 -49554981 - MIR SINE MIR -8 254 1 319 264 157 0 chrY 1958680 1958801 -49554783 - MIR SINE MIR -3 259 120 745 262 16 5 chrY 1959294 1959481 -49554103 + MER5A DNA MER1_type 1 189 0 24 53 0 0 chrY 1959665 1959703 -49553881 + AT_rich Low_complexity Low_complexity 1 38 0 38 61 0 0 chrY 1960049 1960115 -49553469 + AT_rich Low_complexity Low_complexity 1 66 0 5735 60 3 7 chrY 1960190 1960943 -49552641 - L1PA7 LINE L1 0 6154 5405 5384 75 3 1 chrY 1962774 1963485 -49550099 - L1PA7 LINE L1 -4 6150 5439 538 153 57 57 chrY 1963612 1963769 -49549815 + L1MC/D LINE L1 5362 5518 -724 3019 266 70 33 chrY 1963922 1966191 -49547393 + L1MD3 LINE L1 3998 5403 -743 379 234 96 69 chrY 1966177 1966365 -49547219 + L1MC3 LINE L1 6486 6678 -1107 * 356 147 13 0 chrY 1966365 1966440 -49547144 + GA-rich Low_complexity Low_complexity 4 79 0 745 144 0 28 chrY 1966443 1966624 -49546960 + (GGAA)n Simple_repeat Simple_repeat 3 178 0 228 35 0 0 chrY 1966629 1966658 -49546926 + (GGGA)n Simple_repeat Simple_repeat 4 32 0 1222 255 8 21 chrY 1966659 1967032 -49546552 + L1MD3 LINE L1 6909 7276 -719 537 226 0 32 chrY 1967035 1967159 -49546425 + MLT1F1 LTR MaLR 2 121 -446 1216 218 25 4 chrY 1967159 1967434 -49546150 + L1MD3 LINE L1 7402 7682 -313 1969 148 0 0 chrY 1967596 1967909 -49545675 + AluSx SINE Alu 1 313 0 73 23 0 0 chrY 1967999 1968086 -49545498 + AT_rich Low_complexity Low_complexity 1 87 0 34 24 0 0 chrY 1969649 1969690 -49543894 + AT_rich Low_complexity Low_complexity 1 41 0 276 293 54 42 chrY 1969933 1970100 -49543484 + MIR SINE MIR 78 246 -16 408 208 40 0 chrY 1970110 1970211 -49543373 - Ricksha_b DNA DNA -8 1643 1539 18061 187 36 19 chrY 1970231 1973976 -49539608 + L1MA2 LINE L1 18 3833 -3732 6801 151 15 5 chrY 1973980 1976002 -49537582 + L1MA2 LINE L1 5684 7723 0 5920 163 57 3 chrY 1976071 1977136 -49536448 - Ricksha_b DNA DNA -131 1123 1 268 267 100 0 chrY 1977417 1977477 -49536107 + MIR3 SINE MIR 91 156 -52 32 0 0 0 chrY 1978741 1978773 -49534811 + AT_rich Low_complexity Low_complexity 1 32 0 675 236 70 118 chrY 1980149 1980718 -49532866 + MLT1F LTR MaLR 1 542 0 22 0 0 0 chrY 1981554 1981576 -49532008 + AT_rich Low_complexity Low_complexity 1 22 0 777 124 8 0 chrY 1981604 1981733 -49531851 - L1MA5 LINE L1 -11 6289 6160 1119 158 10 0 chrY 1981934 1982130 -49531454 - L1MA4 LINE L1 -152 6148 5951 16751 167 31 18 chrY 1982139 1983257 -49530327 - L1PB1 LINE L1 -7 6860 5758 1633 129 20 109 chrY 1983257 1983605 -49529979 + AluYb8 SINE Alu 1 317 -1 16751 167 31 18 chrY 1983605 1984250 -49529334 - L1PB1 LINE L1 -1109 5758 5123 189 0 0 0 chrY 1984250 1984271 -49529313 + (TTTTA)n Simple_repeat Simple_repeat 2 22 0 16751 167 31 18 chrY 1984271 1989248 -49524336 - L1PB1 LINE L1 -1744 5123 3 255 61 0 0 chrY 1989415 1989448 -49524136 + (GAAAA)n Simple_repeat Simple_repeat 3 35 0 7109 156 23 34 chrY 1990211 1990500 -49523084 - L1MA3 LINE L1 -2 6303 6012 189 0 0 0 chrY 1990500 1990521 -49523063 + (CCCCCA)n Simple_repeat Simple_repeat 3 23 0 7109 156 23 34 chrY 1990521 1992767 -49520817 - L1MA3 LINE L1 -293 6012 3797 3267 267 47 27 chrY 1992769 1995354 -49518230 - L1M4 LINE L1 -2835 3547 823 180 0 0 0 chrY 1995354 1995374 -49518210 + (T)n Simple_repeat Simple_repeat 1 20 0 2396 75 0 7 chrY 1995434 1995742 -49517842 - AluY SINE Alu -5 306 1 229 269 0 0 chrY 1996419 1996471 -49517113 - L1M4 LINE L1 -6301 83 32 23 0 0 0 chrY 1997391 1997414 -49516170 + AT_rich Low_complexity Low_complexity 1 23 0 343 320 26 33 chrY 1997620 1997773 -49515811 + MER5A DNA MER1_type 9 160 -29 5716 147 33 25 chrY 1998749 1999615 -49513969 - L1PB1 LINE L1 0 6151 5257 3256 45 2 2 chrY 1999615 2000017 -49513567 - L1PA7 LINE L1 0 6154 5753 5716 147 33 25 chrY 2000017 2000775 -49512809 - L1PB1 LINE L1 -894 5257 4506 203 135 39 58 chrY 2000929 2000981 -49512603 + (TAGA)n Simple_repeat Simple_repeat 4 54 0 3127 221 9 5 chrY 2000988 2001881 -49511703 - L1PA13 LINE L1 -4253 2544 1634 2981 289 25 20 chrY 2001998 2002793 -49510791 - L1PA13 LINE L1 -5988 799 1 750 206 0 0 chrY 2002806 2002947 -49510637 - FLAM_C SINE Alu -2 141 1 202 340 89 36 chrY 2003438 2003685 -49509899 + L2 LINE L2 1752 2011 -1303 300 374 73 45 chrY 2003711 2004160 -49509424 + L2 LINE L2 2218 2679 -635 222 316 0 0 chrY 2004371 2004428 -49509156 + L2 LINE L2 2992 3048 -224 1883 146 10 0 chrY 2004783 2005071 -49508513 + AluSx SINE Alu 1 291 -21 21 0 0 0 chrY 2005668 2005689 -49507895 + AT_rich Low_complexity Low_complexity 1 21 0 1894 263 19 12 chrY 2005961 2006475 -49507109 + LTR40a LTR ERVL 2 519 0 29 28 0 0 chrY 2006643 2006679 -49506905 + AT_rich Low_complexity Low_complexity 1 36 0 25 0 0 0 chrY 2008176 2008201 -49505383 + AT_rich Low_complexity Low_complexity 1 25 0 345 328 34 0 chrY 2008695 2008814 -49504770 - L3 LINE CR1 -1 1576 1454 2261 96 7 0 chrY 2009266 2009558 -49504026 + AluSx SINE Alu 1 294 -18 521 186 106 0 chrY 2009743 2009856 -49503728 - MER94 DNA DNA -4 130 6 683 185 135 0 chrY 2009926 2010062 -49503522 - L1MA9 LINE L1 0 6312 6145 240 111 0 0 chrY 2010062 2010098 -49503486 + (TG)n Simple_repeat Simple_repeat 1 36 0 683 185 135 0 chrY 2010098 2010139 -49503445 - L1MA9 LINE L1 -167 6145 6111 571 159 28 0 chrY 2010135 2010242 -49503342 + L1MA9 LINE L1 6029 6138 -174 * 2451 248 73 29 chrY 2010322 2011115 -49502469 - L1ME2 LINE L1 -9 6155 5328 33 25 0 0 chrY 2011460 2011500 -49502084 + AT_rich Low_complexity Low_complexity 1 40 0 1197 247 69 44 chrY 2013479 2013960 -49499624 - L1ME2 LINE L1 -975 5171 4679 770 184 0 0 chrY 2014276 2014417 -49499167 - L1PA15 LINE L1 -4 6161 6021 6312 159 11 136 chrY 2014418 2015608 -49497976 - MSTA-int LTR MaLR -193 1387 441 2188 116 3 0 chrY 2015608 2015901 -49497683 - AluSx SINE Alu -18 294 1 6312 159 11 136 chrY 2015901 2016292 -49497292 - MSTA-int LTR MaLR -1139 441 3 2034 141 141 5 chrY 2016296 2016671 -49496913 - MSTA LTR MaLR -2 426 1 1084 267 65 28 chrY 2016895 2017292 -49496292 + L1MC4 LINE L1 6459 6870 -1172 371 237 17 34 chrY 2017288 2017406 -49496178 + L1MC4 LINE L1 7775 7890 -152 * 467 126 0 2 chrY 2017598 2017676 -49495908 - L1PA14 LINE L1 -191 5963 5887 324 218 73 18 chrY 2018315 2018425 -49495159 + MER4C LTR ERV1 1 116 -349 474 207 14 163 chrY 2018495 2018759 -49494825 + LTR34 LTR ERV1 136 455 -244 362 159 214 35 chrY 2018759 2018870 -49494714 + LTR34 LTR ERV1 278 496 -203 454 88 44 0 chrY 2018870 2018938 -49494646 - L1PA13 LINE L1 -330 5838 5768 2009 106 3 0 chrY 2018942 2019234 -49494350 + L1PA13 LINE L1 5860 6152 -11 588 246 44 22 chrY 2019253 2019436 -49494148 + MER4C LTR ERV1 275 461 -4 21 0 0 31 chrY 2019612 2019631 -49493953 + AT_rich Low_complexity Low_complexity 1 20 -11 1960 125 11 0 chrY 2019631 2019912 -49493672 - AluSg SINE Alu -26 284 1 21 0 0 31 chrY 2019912 2019924 -49493660 + AT_rich Low_complexity Low_complexity 20 31 0 274 336 96 0 chrY 2020379 2020504 -49493080 - MIR SINE MIR -31 231 95 245 200 0 36 chrY 2020785 2020840 -49492744 + L2 LINE L2 3205 3257 -15 21 100 0 0 chrY 2021128 2021198 -49492386 + AT_rich Low_complexity Low_complexity 1 70 0 857 327 88 34 chrY 2021287 2021841 -49491743 + L1PA16 LINE L1 788 1371 -6203 495 294 18 0 chrY 2021909 2022097 -49491487 + L1PA16 LINE L1 2083 2300 -5274 11537 260 33 10 chrY 2022326 2025064 -49488520 + L1PA16 LINE L1 2182 5084 -2500 207 0 0 0 chrY 2025064 2025087 -49488497 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 11537 260 33 10 chrY 2025087 2026845 -49486739 + L1PA16 LINE L1 5084 6801 -783 3862 115 11 4 chrY 2026855 2027561 -49486023 + L1P4 LINE L1 5106 5814 -349 4073 170 18 1 chrY 2027576 2028313 -49485271 + L1PA16 LINE L1 6846 7594 -10 3823 223 14 2 chrY 2028313 2029285 -49484299 + L1 LINE L1 4327 5310 -836 * 9224 193 18 18 chrY 2029259 2030541 -49483043 + L1P4 LINE L1 3271 4551 -1614 2446 82 0 0 chrY 2030541 2030835 -49482749 + AluY SINE Alu 1 294 -17 9224 193 18 18 chrY 2030835 2031823 -49481761 + L1P4 LINE L1 4551 5537 -628 7425 33 0 0 chrY 2031823 2033041 -49480543 - L1PA4 LINE L1 -2 6153 4933 25168 40 3 1 chrY 2033041 2036916 -49476668 + L1P LINE L1 810 4691 -1455 1161 134 6 0 chrY 2036910 2037089 -49476495 + L1P4 LINE L1 5523 5702 -464 * 1124 192 33 0 chrY 2037771 2038016 -49475568 + L1MB7 LINE L1 5923 6175 -9 508 265 111 19 chrY 2038198 2038360 -49475224 + MIR SINE MIR 37 213 -49 530 316 19 6 chrY 2038594 2038752 -49474832 + MIR SINE MIR 14 173 -89 1201 151 4 100 chrY 2038763 2039021 -49474563 - MSTB2 LTR MaLR 0 457 225 2133 195 2 5 chrY 2039021 2039416 -49474168 - MER57A LTR ERV1 0 403 10 937 233 30 0 chrY 2039422 2039624 -49473960 - MSTB2 LTR MaLR -249 208 1 10285 162 34 18 chrY 2040131 2040333 -49473251 - L1MA2 LINE L1 0 6304 6107 2125 124 3 0 chrY 2040333 2040639 -49472945 - AluSp SINE Alu -6 307 1 10285 162 34 18 chrY 2040639 2042473 -49471111 - L1MA2 LINE L1 -197 6107 4303 450 36 0 0 chrY 2042473 2042529 -49471055 + (TG)n Simple_repeat Simple_repeat 1 56 0 10285 162 34 18 chrY 2042529 2043078 -49470506 - L1MA2 LINE L1 -2001 4303 3764 387 0 0 0 chrY 2043078 2043121 -49470463 + (TTTTG)n Simple_repeat Simple_repeat 3 45 0 10285 162 34 18 chrY 2043121 2043594 -49469990 - L1MA2 LINE L1 -2540 3764 3206 1779 170 7 13 chrY 2044570 2044876 -49468708 + MER7A DNA MER2_type 45 346 0 341 332 100 11 chrY 2045614 2045804 -49467780 - MIR SINE MIR -54 208 2 24 77 0 0 chrY 2046001 2046053 -49467531 + AT_rich Low_complexity Low_complexity 1 52 0 2705 29 0 6 chrY 2046597 2046908 -49466676 + AluY SINE Alu 1 309 -2 21 0 0 0 chrY 2048003 2048024 -49465560 + AT_rich Low_complexity Low_complexity 1 21 0 2617 20 0 0 chrY 2048134 2048428 -49465156 + AluY SINE Alu 1 294 -17 234 0 0 0 chrY 2048428 2048454 -49465130 + (TA)n Simple_repeat Simple_repeat 2 27 0 3324 140 8 9 chrY 2050811 2051629 -49461955 - L1M1 LINE L1 -528 7193 6377 1828 112 158 78 chrY 2051629 2052003 -49461581 - MER4A LTR ERV1 0 664 261 645 120 0 20 chrY 2052003 2052103 -49461481 - MER4A LTR ERV1 -566 98 1 12084 190 24 20 chrY 2052103 2055632 -49457952 - L1M1 LINE L1 -1185 6380 2853 182 33 67 0 chrY 2055632 2055662 -49457922 + (TTTG)n Simple_repeat Simple_repeat 2 33 0 12084 190 24 20 chrY 2055662 2055752 -49457832 - L1M1 LINE L1 -4712 2853 2765 5858 227 42 5 chrY 2055749 2057036 -49456548 - L1M1 LINE L1 -6219 1346 12 * 32 26 0 0 chrY 2057082 2057121 -49456463 + AT_rich Low_complexity Low_complexity 1 39 0 792 292 161 11 chrY 2057212 2057585 -49455999 + MLT1J2 LTR MaLR 1 429 -21 28 0 0 0 chrY 2058060 2058088 -49455496 + AT_rich Low_complexity Low_complexity 1 28 0 9255 169 171 9 chrY 2058468 2060189 -49453395 + L1PA12 LINE L1 5 2004 -5577 2785 283 134 12 chrY 2060187 2061007 -49452577 + L1PA13 LINE L1 339 1258 -5529 * 3854 169 4 17 chrY 2061008 2061704 -49451880 + L1PA13 LINE L1 1394 2082 -4705 1845 181 3 0 chrY 2061704 2062007 -49451577 + AluSx SINE Alu 7 310 -2 3854 169 4 17 chrY 2062007 2062020 -49451564 + L1PA13 LINE L1 2082 2094 -4693 * 16982 166 16 24 chrY 2062008 2062794 -49450790 + L1PA13 LINE L1 2494 3285 -3529 441 0 0 0 chrY 2062794 2062843 -49450741 + (TA)n Simple_repeat Simple_repeat 2 50 0 16982 166 16 24 chrY 2062843 2063150 -49450434 + L1PA13 LINE L1 3285 3593 -3221 1948 136 21 0 chrY 2063150 2063437 -49450147 + AluSx SINE Alu 1 293 -19 16982 166 16 24 chrY 2063437 2064841 -49448743 + L1PA13 LINE L1 3593 5007 -1807 1452 186 55 0 chrY 2064841 2065115 -49448469 + AluJo SINE Alu 1 289 -23 16982 166 16 24 chrY 2065115 2066870 -49446714 + L1PA13 LINE L1 5007 6710 -104 2362 84 0 3 chrY 2066870 2067169 -49446415 + AluSq SINE Alu 1 298 -15 16982 166 16 24 chrY 2067169 2067274 -49446310 + L1PA13 LINE L1 6710 6814 0 240 369 71 74 chrY 2067946 2068353 -49445231 + L2 LINE L2 2829 3234 -38 949 183 18 0 chrY 2068913 2069082 -49444502 - AluSg/x SINE Alu -10 300 129 2054 224 22 60 chrY 2073407 2073862 -49439722 + MER92B LTR ERV1 62 490 -146 1215 64 13 0 chrY 2073862 2074019 -49439565 + L1PA3 LINE L1 5997 6155 0 2054 224 22 60 chrY 2074019 2074161 -49439423 + MER92B LTR ERV1 490 636 0 257 250 53 0 chrY 2075198 2075274 -49438310 + L1MCb LINE L1 1 80 -5965 53 17 0 0 chrY 2075274 2075334 -49438250 + AT_rich Low_complexity Low_complexity 1 60 0 361 198 66 60 chrY 2075368 2075535 -49438049 + L1MCb LINE L1 1280 1447 -5117 1207 208 72 4 chrY 2075776 2076026 -49437558 + Tigger7 DNA MER2_type 1 267 -2220 438 237 21 0 chrY 2076024 2076121 -49437463 + Tigger7 DNA MER2_type 2489 2587 0 * 296 343 20 0 chrY 2076145 2076247 -49437337 - L2 LINE L2 -243 3070 2967 925 161 0 0 chrY 2077958 2078101 -49435483 + FRAM SINE Alu 8 150 -26 1075 184 61 17 chrY 2078130 2078424 -49435160 - L1MDb LINE L1 -4402 2004 1698 6702 135 26 15 chrY 2079393 2081374 -49432210 + L1MA2 LINE L1 4314 6304 0 2449 61 3 0 chrY 2081587 2081882 -49431702 - AluY SINE Alu -15 296 1 2660 250 136 24 chrY 2083298 2084514 -49429070 - L1MDb LINE L1 -4699 1707 378 1846 291 70 10 chrY 2084549 2085133 -49428451 - L1MDb LINE L1 -5782 627 9 229 250 0 0 chrY 2085576 2085628 -49427956 + LTR30 LTR ERV1 1 52 -670 1309 113 161 2 chrY 2085628 2085870 -49427714 + LTR12 LTR ERV1 57 2017 -421 349 247 0 0 chrY 2085870 2085951 -49427633 + LTR30 LTR ERV1 544 624 -98 704 139 4 0 chrY 2085951 2086071 -49427513 + LTR12 LTR ERV1 359 714 0 1756 234 73 16 chrY 2086170 2086597 -49426987 - MER21B LTR ERV1 -69 794 344 27 0 0 0 chrY 2087536 2087563 -49426021 + AT_rich Low_complexity Low_complexity 1 27 0 1156 228 88 28 chrY 2087707 2088027 -49425557 + MLT1A1 LTR MaLR 3 341 -24 606 318 82 14 chrY 2088793 2089013 -49424571 + MIR SINE MIR 20 254 -8 1595 167 3 35 chrY 2089075 2089363 -49424221 + AluJo SINE Alu 12 290 -22 196 191 45 79 chrY 2089827 2089916 -49423668 + L2 LINE L2 3103 3188 -125 22 0 0 0 chrY 2090100 2090122 -49423462 + AT_rich Low_complexity Low_complexity 1 22 0 378 301 87 0 chrY 2090987 2091090 -49422494 + L2 LINE L2 3197 3308 -5 4471 161 62 19 chrY 2091106 2091465 -49422119 + L1MB1 LINE L1 5104 5446 -722 2235 108 0 0 chrY 2091465 2091762 -49421822 + AluSg1 SINE Alu 1 297 -12 4471 161 62 19 chrY 2091762 2091893 -49421691 + L1MB1 LINE L1 5446 5570 -598 1991 138 3 6 chrY 2091893 2092204 -49421380 - AluSq SINE Alu -3 310 1 4471 161 62 19 chrY 2092204 2092754 -49420830 + L1MB1 LINE L1 5570 6168 0 398 347 33 20 chrY 2092863 2093108 -49420476 + L3b LINE CR1 1104 1351 -232 13851 37 7 0 chrY 2093653 2096122 -49417462 + L1PA4 LINE L1 3684 6154 -1 2084 88 7 0 chrY 2096664 2096958 -49416626 - L1PA7 LINE L1 0 6154 5859 2337 83 12 0 chrY 2096958 2097282 -49416302 + L1P LINE L1 4595 4922 -1224 22 80 0 0 chrY 2097467 2097517 -49416067 + AT_rich Low_complexity Low_complexity 1 50 0 479 179 0 21 chrY 2098070 2098165 -49415419 - FLAM_A SINE Alu -36 106 14 2459 65 0 0 chrY 2098614 2098924 -49414660 + AluY SINE Alu 1 310 -1 2170 88 11 0 chrY 2099329 2099614 -49413970 + AluSx SINE Alu 1 288 -24 1933 125 14 0 chrY 2099790 2100109 -49413475 + AluSq SINE Alu 1 323 0 26 50 0 0 chrY 2100535 2100575 -49413009 + AT_rich Low_complexity Low_complexity 1 40 0 5531 130 32 3 chrY 2101173 2102925 -49410659 - L1PA15 LINE L1 0 6165 4379 3088 185 15 8 chrY 2102932 2103543 -49410041 - L1 LINE L1 -1951 4195 3581 7577 182 36 15 chrY 2103579 2105424 -49408160 - L1MA4A LINE L1 -181 6824 4913 1772 169 3 10 chrY 2105424 2105720 -49407864 + AluSx SINE Alu 5 298 -14 7577 182 36 15 chrY 2105720 2106332 -49407252 - L1MA4A LINE L1 -2092 4913 4315 1403 205 57 0 chrY 2106358 2106689 -49406895 - L1MA4A LINE L1 -4099 2750 2401 * 3005 216 43 0 chrY 2106685 2107283 -49406301 + L1M1 LINE L1 15 638 -6927 6247 163 12 3 chrY 2107324 2108895 -49404689 + L1MA3 LINE L1 4717 6305 0 918 302 4 4 chrY 2108916 2109191 -49404393 + L1PA10 LINE L1 2 276 -5599 1211 162 10 0 chrY 2109194 2109398 -49404186 - L1P LINE L1 -4219 1927 1722 880 189 71 19 chrY 2109390 2109602 -49403982 + L1PA10 LINE L1 1133 1355 -5106 * 18016 143 7 14 chrY 2109582 2113603 -49399981 + L1PA10 LINE L1 2485 6474 -9 28 0 0 0 chrY 2113603 2113631 -49399953 + AT_rich Low_complexity Low_complexity 1 28 0 345 47 0 0 chrY 2115198 2115241 -49398343 + (TG)n Simple_repeat Simple_repeat 2 44 0 5493 154 51 12 chrY 2115924 2117170 -49396414 + L1MA4A LINE L1 5005 6297 -6 748 213 11 6 chrY 2117939 2118113 -49395471 + L1MD3 LINE L1 7819 7993 -2 415 267 0 84 chrY 2118723 2118854 -49394730 - L2 LINE L2 -4 3309 3190 682 183 14 0 chrY 2118885 2119027 -49394557 - L1MA7 LINE L1 -2 6289 6146 187 276 52 17 chrY 2119880 2119938 -49393646 + MIR SINE MIR 49 108 -154 2253 198 40 12 chrY 2120627 2121121 -49392463 + L1MB7 LINE L1 5566 6073 -111 1739 168 35 35 chrY 2121121 2121491 -49392093 - THE1C LTR MaLR 0 375 6 5678 141 9 3 chrY 2121496 2122367 -49391217 - THE1C-int LTR MaLR 0 1580 705 311 115 0 39 chrY 2122373 2122425 -49391159 - THE1C LTR MaLR -324 51 2 469 194 0 0 chrY 2122425 2122523 -49391061 + L1MB7 LINE L1 6069 6166 -18 354 274 78 28 chrY 2122573 2122752 -49390832 + MIR SINE MIR 75 262 0 184 140 60 0 chrY 2122908 2122958 -49390626 + (CATATA)n Simple_repeat Simple_repeat 2 54 0 311 243 14 0 chrY 2123252 2123322 -49390262 - L1MB1 LINE L1 -200 5989 5919 191 327 19 0 chrY 2123532 2123584 -49390000 - MIR SINE MIR -113 149 97 5800 225 44 6 chrY 2123683 2124934 -49388650 + L1PB2 LINE L1 9 1306 -6259 864 158 36 108 chrY 2124934 2125156 -49388428 + MSTA LTR MaLR 170 428 0 4769 143 24 25 chrY 2125179 2126117 -49387467 + L1PB2 LINE L1 2729 3665 -3900 9264 214 25 7 chrY 2126119 2128281 -49385303 + L1PB2 LINE L1 3863 6063 -1502 5742 112 7 6 chrY 2128251 2129116 -49384468 + L1PB2 LINE L1 6702 7567 -3 * 5684 162 71 24 chrY 2129416 2129871 -49383713 - Tigger3b DNA MER2_type -1797 1231 799 1915 171 36 13 chrY 2129871 2130264 -49383320 + L1MA5 LINE L1 5899 6300 0 5684 162 71 24 chrY 2130264 2130984 -49382600 - Tigger3b DNA MER2_type -2229 799 1 29 60 0 0 chrY 2131546 2131596 -49381988 + AT_rich Low_complexity Low_complexity 1 50 0 2099 135 3 45 chrY 2131825 2132204 -49381380 + L1PA13 LINE L1 5794 6156 -7 2337 154 3 8 chrY 2132564 2132941 -49380643 - THE1C LTR MaLR 0 375 1 9204 142 44 7 chrY 2132941 2134464 -49379120 - THE1C-int LTR MaLR 0 1580 1 2557 123 3 3 chrY 2134464 2134839 -49378745 - THE1C LTR MaLR 0 375 1 189 391 64 35 chrY 2135603 2135805 -49377779 + L2 LINE L2 2421 2628 -686 550 323 32 14 chrY 2135814 2136034 -49377550 + L3 LINE CR1 1165 1388 -189 186 43 0 0 chrY 2136223 2136246 -49377338 + (TG)n Simple_repeat Simple_repeat 2 24 0 184 316 26 44 chrY 2136494 2136608 -49376976 - MIR SINE MIR -46 216 105 225 0 0 0 chrY 2137811 2137836 -49375748 + (TTTA)n Simple_repeat Simple_repeat 2 26 0 23974 69 4 5 chrY 2137838 2141917 -49371667 - L1PA4 LINE L1 -2 6468 2392 5435 141 8 5 chrY 2141916 2142759 -49370825 - L1PA4 LINE L1 -5615 846 1 * 9750 218 43 11 chrY 2142761 2144785 -49368799 - L1M2 LINE L1 -4669 2180 91 279 361 57 16 chrY 2144856 2144978 -49368606 - L2 LINE L2 -5 3267 3141 21 0 0 0 chrY 2145247 2145268 -49368316 + AT_rich Low_complexity Low_complexity 1 21 0 287 281 0 0 chrY 2145290 2145354 -49368230 - LTR16B LTR ERVL 0 464 401 720 292 4 4 chrY 2145356 2145620 -49367964 + L1M4 LINE L1 4478 4741 -1405 195 42 0 0 chrY 2145633 2145657 -49367927 + (TC)n Simple_repeat Simple_repeat 2 25 0 1852 216 28 28 chrY 2145660 2146202 -49367382 - MLT2A2 LTR ERVL -15 539 3 983 329 36 18 chrY 2146239 2146625 -49366959 + L1M3d LINE L1 1 393 -5498 43440 45 1 3 chrY 2146720 2152887 -49360697 + L1PA3 LINE L1 1 6155 0 189 180 0 0 chrY 2152911 2152961 -49360623 + A-rich Low_complexity Low_complexity 1 50 0 1835 177 43 0 chrY 2153815 2154166 -49359418 + MER47A DNA MER2_type 1 366 0 1464 45 0 0 chrY 2154660 2154837 -49358747 + L1PA5 LINE L1 5965 6141 -13 300 154 0 0 chrY 2154837 2154889 -49358695 + (TA)n Simple_repeat Simple_repeat 1 52 0 213 211 0 0 chrY 2157902 2157954 -49355630 + CT-rich Low_complexity Low_complexity 3 54 0 248 292 21 69 chrY 2157960 2158104 -49355480 - L2 LINE L2 -17 3296 3160 270 95 0 0 chrY 2158660 2158702 -49354882 + (CA)n Simple_repeat Simple_repeat 1 42 0 24 32 0 0 chrY 2158977 2159008 -49354576 + AT_rich Low_complexity Low_complexity 1 31 0 2294 126 19 25 chrY 2159593 2159959 -49353625 - THE1B LTR MaLR 0 364 1 2968 135 18 8 chrY 2160454 2160966 -49352618 - L1MA3 LINE L1 0 7724 7208 7544 125 49 9 chrY 2160966 2162648 -49350936 + MER4B-int LTR ERV1 4974 6758 0 2543 167 72 35 chrY 2162648 2163192 -49350392 + MER4B LTR ERV1 1 564 -46 3592 157 18 11 chrY 2163212 2163777 -49349807 - L1MA3 LINE L1 -498 7225 6665 1937 133 67 28 chrY 2163777 2164138 -49349446 + THE1C LTR MaLR 1 375 0 3592 157 18 11 chrY 2164138 2164427 -49349157 - L1MA3 LINE L1 -1058 6665 6360 306 0 0 0 chrY 2164427 2164461 -49349123 + (TG)n Simple_repeat Simple_repeat 1 34 0 3592 157 18 11 chrY 2164461 2164606 -49348978 - L1MA3 LINE L1 -1363 6360 6217 1909 146 30 46 chrY 2164608 2164978 -49348606 + THE1B LTR MaLR 1 364 0 10969 109 25 0 chrY 2164978 2166512 -49347072 + THE1B-int LTR MaLR 8 1580 0 1868 146 33 36 chrY 2166512 2166874 -49346710 + THE1B LTR MaLR 1 361 -3 19361 188 31 30 chrY 2166877 2167759 -49345825 - L1MA3 LINE L1 -1346 6219 5340 538 131 0 0 chrY 2167759 2167843 -49345741 - AluS SINE Alu -229 84 1 19361 188 31 30 chrY 2167843 2173087 -49340497 - L1MA3 LINE L1 -2225 5340 17 2296 149 81 0 chrY 2173106 2173502 -49340082 - MSTA LTR MaLR 0 428 1 540 374 88 38 chrY 2173724 2174471 -49339113 + L2 LINE L2 1967 2751 -563 28 22 0 22 chrY 2175350 2175371 -49338213 + AT_rich Low_complexity Low_complexity 1 21 -24 2105 96 0 47 chrY 2175371 2175507 -49338077 + AluY SINE Alu 1 142 -169 2733 7 3 10 chrY 2175507 2175815 -49337769 + AluYa5 SINE Alu 1 306 -5 2105 96 0 47 chrY 2175815 2175979 -49337605 + AluY SINE Alu 142 287 -24 28 22 0 22 chrY 2175979 2176003 -49337581 + AT_rich Low_complexity Low_complexity 21 45 0 2758 13 0 3 chrY 2176009 2176317 -49337267 - AluYa5 SINE Alu -4 307 1 368 250 50 0 chrY 2176394 2176474 -49337110 - AluJo SINE Alu -12 290 207 747 214 76 0 chrY 2176474 2176619 -49336965 - AluJo SINE Alu -154 158 3 2148 159 3 23 chrY 2176663 2177053 -49336531 - L1PA15 LINE L1 -2 6163 5782 262 278 0 0 chrY 2177054 2177144 -49336440 + L1MC4 LINE L1 6614 6703 -1339 228 269 0 21 chrY 2177086 2177179 -49336405 - L1MC4 LINE L1 -1339 6703 6613 * 1878 128 17 10 chrY 2177158 2177455 -49336129 - L1P4 LINE L1 -373 5792 5494 1010 177 0 5 chrY 2177469 2177655 -49335929 + L1PA15 LINE L1 5979 6163 -2 321 240 0 13 chrY 2177697 2177772 -49335812 + AluS SINE Alu 1 74 -228 1300 77 14 19 chrY 2177777 2177985 -49335599 - L1P4 LINE L1 -679 5486 5280 390 356 80 41 chrY 2178216 2178895 -49334689 - L2 LINE L2 -1002 2312 1608 257 280 72 57 chrY 2178919 2179112 -49334472 - L2 LINE L2 -1816 1498 1303 21 36 0 0 chrY 2179366 2179394 -49334190 + AT_rich Low_complexity Low_complexity 1 28 0 200 103 0 0 chrY 2179459 2179488 -49334096 + L2 LINE L2 3244 3272 0 1248 293 124 6 chrY 2181069 2181621 -49331963 - L2 LINE L2 0 3313 2708 15108 153 16 15 chrY 2181997 2184581 -49329003 - Tigger2 DNA MER2_type -130 2588 1 347 259 129 70 chrY 2185253 2185454 -49328130 + MIR SINE MIR 2 214 -48 21 0 0 0 chrY 2185636 2185657 -49327927 + AT_rich Low_complexity Low_complexity 1 21 0 2100 104 7 0 chrY 2185798 2186085 -49327499 - AluSp SINE Alu 0 313 25 2352 129 13 11 chrY 2186125 2186497 -49327087 + THE1C LTR MaLR 1 373 -2 217 222 0 0 chrY 2186644 2186689 -49326895 + (TGAA)n Simple_repeat Simple_repeat 4 48 0 180 274 123 27 chrY 2187070 2187143 -49326441 + L2 LINE L2 3229 3308 -5 21 0 0 0 chrY 2187269 2187290 -49326294 + AT_rich Low_complexity Low_complexity 1 21 0 369 0 0 0 chrY 2188944 2188985 -49324599 + (CA)n Simple_repeat Simple_repeat 2 42 0 720 240 37 70 chrY 2189287 2189529 -49324055 + MER21B LTR ERV1 1 234 -629 1596 245 34 32 chrY 2189567 2190004 -49323580 + MER21B LTR ERV1 321 758 -105 2269 85 0 52 chrY 2190202 2190530 -49323054 + AluSp SINE Alu 3 313 0 2030 158 31 6 chrY 2190893 2191248 -49322336 + THE1B LTR MaLR 1 364 0 4351 40 3 42 chrY 2191918 2192493 -49321091 + L1PA5 LINE L1 5602 6154 0 180 77 0 0 chrY 2193500 2193526 -49320058 + (TTTA)n Simple_repeat Simple_repeat 3 28 0 16490 36 38 1 chrY 2193526 2196330 -49317254 - L1PA4 LINE L1 -16 6139 3229 2503 120 5 8 chrY 2196610 2196986 -49316598 - THE1C LTR MaLR 0 375 1 673 146 8 32 chrY 2196990 2197113 -49316471 - THE1-int LTR MaLR -387 1193 1074 1371 100 5 11 chrY 2197119 2197309 -49316275 - THE1C LTR MaLR -186 189 1 2203 148 14 0 chrY 2197313 2197658 -49315926 - THE1-int LTR MaLR -387 1193 844 205 264 216 16 chrY 2197993 2198118 -49315466 - MIR SINE MIR 0 262 113 22 35 0 0 chrY 2198314 2198343 -49315241 + AT_rich Low_complexity Low_complexity 1 29 0 1380 24 12 0 chrY 2198371 2198537 -49315047 + L1PA3 LINE L1 5985 6152 -3 368 312 40 0 chrY 2199009 2199134 -49314450 - MIR SINE MIR -4 258 129 26 0 0 0 chrY 2199956 2199982 -49313602 + AT_rich Low_complexity Low_complexity 1 26 0 25 65 0 0 chrY 2200930 2200976 -49312608 + AT_rich Low_complexity Low_complexity 1 46 0 1997 144 36 36 chrY 2201066 2201428 -49312156 - THE1B LTR MaLR -2 362 1 25 51 0 0 chrY 2201448 2201487 -49312097 + AT_rich Low_complexity Low_complexity 1 39 0 237 280 9 56 chrY 2202264 2202371 -49311213 + MIR SINE MIR 100 201 -61 24 32 0 0 chrY 2203455 2203486 -49310098 + AT_rich Low_complexity Low_complexity 1 31 0 281 204 11 11 chrY 2203537 2203647 -49309937 + (TTTAA)n Simple_repeat Simple_repeat 1 110 0 28 71 0 0 chrY 2203648 2203704 -49309880 + AT_rich Low_complexity Low_complexity 1 56 0 18210 202 15 14 chrY 2203749 2206313 -49307271 + L1PA16 LINE L1 2 2563 -4306 2499 61 0 3 chrY 2206313 2206608 -49306976 - AluY SINE Alu -17 294 1 18210 202 15 14 chrY 2206608 2207037 -49306547 + L1PA16 LINE L1 2563 2990 -3879 609 27 0 0 chrY 2207037 2207111 -49306473 + L1PA5 LINE L1 6076 6149 -5 18210 202 15 14 chrY 2207111 2207168 -49306416 + L1PA16 LINE L1 2990 3045 -3824 2286 110 0 16 chrY 2207168 2207486 -49306098 - AluSq SINE Alu 0 313 1 18210 202 15 14 chrY 2207486 2211283 -49302301 + L1PA16 LINE L1 3045 6860 -9 4291 135 27 10 chrY 2212297 2213008 -49300576 - Tigger1 DNA MER2_type 0 2418 1696 5351 159 41 21 chrY 2213023 2214016 -49299568 - Tigger1 DNA MER2_type -1405 1013 1 275 333 22 0 chrY 2214016 2214106 -49299478 - MIR SINE MIR -64 198 107 4940 142 14 10 chrY 2214163 2216067 -49297517 - L1PA15 LINE L1 0 6816 4884 9233 254 34 29 chrY 2216067 2219559 -49294025 - L1PA15 LINE L1 -3276 3521 3 207 0 0 0 chrY 2219571 2219594 -49293990 + (A)n Simple_repeat Simple_repeat 1 23 0 1293 201 109 10 chrY 2219599 2219912 -49293672 + MER2 DNA MER2_type 1 344 0 509 216 43 0 chrY 2220643 2220759 -49292825 - MIR SINE MIR -16 246 126 21 0 0 0 chrY 2220886 2220907 -49292677 + AT_rich Low_complexity Low_complexity 1 21 0 181 245 204 41 chrY 2221124 2221222 -49292362 + L2 LINE L2 2566 2679 -635 200 116 23 23 chrY 2221258 2221301 -49292283 + L2 LINE L2 3266 3308 -5 2016 98 0 0 chrY 2221920 2222195 -49291389 + L1P3 LINE L1 4 278 -6183 5545 74 0 8 chrY 2222195 2222934 -49290650 + L1PA8 LINE L1 5434 6166 -6 5579 162 16 2 chrY 2222938 2224075 -49289509 + L1MA4A LINE L1 5144 6296 -7 4033 200 24 72 chrY 2224104 2225039 -49288545 + L1MB3 LINE L1 4614 5423 -760 2320 231 60 50 chrY 2225039 2225720 -49287864 + MER76 LTR ERV 1 688 0 4033 200 24 72 chrY 2225720 2226445 -49287139 + L1MB3 LINE L1 5423 6181 -2 23 33 0 0 chrY 2226498 2226528 -49287056 + AT_rich Low_complexity Low_complexity 1 30 0 752 266 12 8 chrY 2226583 2226824 -49286760 + L1 LINE L1 4452 4693 -1453 351 221 53 0 chrY 2226823 2226918 -49286666 + L1 LINE L1 4422 4521 -1625 * 842 298 24 60 chrY 2226985 2227398 -49286186 - MLT1I LTR MaLR 0 409 12 880 240 38 116 chrY 2227440 2227836 -49285748 - MLT1A1 LTR MaLR 0 365 1 190 307 175 9 chrY 2227852 2227966 -49285618 - MIR SINE MIR -49 213 81 42729 31 22 1 chrY 2229276 2235301 -49278283 - L1HS LINE L1 0 6155 4 3088 149 39 8 chrY 2235301 2235877 -49277707 - MER4B LTR ERV1 -20 759 1 190 308 65 56 chrY 2236258 2236365 -49277219 - L2 LINE L2 -158 3114 3007 27 29 0 0 chrY 2237426 2237460 -49276124 + AT_rich Low_complexity Low_complexity 1 34 0 192 286 41 0 chrY 2237915 2237964 -49275620 - L2 LINE L2 -3 3269 3219 29 0 0 0 chrY 2238410 2238439 -49275145 + AT_rich Low_complexity Low_complexity 1 29 0 40 67 0 0 chrY 2238533 2238608 -49274976 + AT_rich Low_complexity Low_complexity 1 75 0 23 78 0 0 chrY 2238642 2238693 -49274891 + AT_rich Low_complexity Low_complexity 1 51 0 396 0 0 0 chrY 2238722 2238766 -49274818 + (TA)n Simple_repeat Simple_repeat 1 44 0 284 288 161 8 chrY 2239376 2239494 -49274090 - MIR SINE MIR 0 262 127 1969 111 0 0 chrY 2240488 2240749 -49272835 - AluSx SINE Alu -10 302 42 4285 118 46 1 chrY 2240888 2241651 -49271933 + L1PBa LINE L1 1614 2410 -4453 14990 177 26 33 chrY 2241657 2241756 -49271828 - L1M1 LINE L1 -4462 3103 3005 1512 141 0 8 chrY 2241756 2241990 -49271594 - AluSg/x SINE Alu 0 310 79 14990 177 26 33 chrY 2241990 2242734 -49270850 - L1M1 LINE L1 -4560 3005 2257 2257 67 3 18 chrY 2242734 2243018 -49270566 - AluY SINE Alu -15 296 17 14990 177 26 33 chrY 2243018 2245291 -49268293 - L1M1 LINE L1 -5308 2257 8 306 269 186 14 chrY 2245469 2245614 -49267970 + MER5A DNA MER1_type 9 178 -11 843 227 152 28 chrY 2245896 2246218 -49267366 + MLT1D LTR MaLR 127 488 -17 201 208 0 21 chrY 2246325 2246373 -49267211 + (TAA)n Simple_repeat Simple_repeat 2 48 0 210 37 0 0 chrY 2246567 2246594 -49266990 + (A)n Simple_repeat Simple_repeat 1 27 0 257 264 109 9 chrY 2246710 2246820 -49266764 + L2 LINE L2 2933 3053 -219 830 282 53 8 chrY 2247122 2247367 -49266217 - MIR SINE MIR 0 262 7 242 270 217 26 chrY 2247903 2248018 -49265566 + MIR3 SINE MIR 20 156 -52 1361 36 0 6 chrY 2249723 2249889 -49263695 - L1PA4 LINE L1 -8 6147 5983 249 98 0 0 chrY 2250348 2250389 -49263195 + (GA)n Simple_repeat Simple_repeat 2 42 0 239 352 11 0 chrY 2251586 2251674 -49261910 - MIR3 SINE MIR -17 191 103 536 248 163 33 chrY 2251686 2251839 -49261745 + MER5A DNA MER1_type 16 188 -1 1113 163 28 23 chrY 2252494 2252709 -49260875 + MER20 DNA MER1_type 3 218 -1 41780 40 1 2 chrY 2253601 2259760 -49253824 + L1PA3 LINE L1 2 6155 0 345 47 0 0 chrY 2260673 2260716 -49252868 + (TA)n Simple_repeat Simple_repeat 2 44 0 2714 26 0 3 chrY 2260896 2261207 -49252377 - AluY SINE Alu -1 310 1 2208 212 47 21 chrY 2262007 2262540 -49251044 - MLT1E2 LTR MaLR 0 626 80 264 314 12 12 chrY 2262498 2262584 -49251000 - MLT2D LTR ERVL -289 125 41 * 241 333 39 0 chrY 2262684 2262762 -49250822 - MER91A DNA MER1_type -115 81 1 266 374 123 19 chrY 2263846 2264001 -49249583 + MIR3 SINE MIR 5 175 -33 296 307 68 43 chrY 2264121 2264305 -49249279 + MIR3 SINE MIR 33 216 -31 256 245 18 25 chrY 2264377 2264472 -49249112 + MIR3 SINE MIR 66 160 -48 204 40 0 0 chrY 2265526 2265551 -49248033 + (TA)n Simple_repeat Simple_repeat 1 25 0 2411 145 27 44 chrY 2265741 2266363 -49247221 + MER4B LTR ERV1 3 779 0 968 210 48 117 chrY 2266692 2267274 -49246310 + MER34 LTR ERV1 1 542 0 298 253 23 0 chrY 2267834 2267921 -49245663 + MER103 DNA DNA 22 110 -56 3853 137 16 3 chrY 2268857 2269484 -49244100 - MER41B LTR ERV1 0 635 1 786 208 74 0 chrY 2270488 2270719 -49242865 - MER69 DNA AcHobo -1 2525 2278 458 217 0 0 chrY 2270726 2270818 -49242766 - Tigger7 DNA MER2_type -29 2558 2467 384 165 13 0 chrY 2270809 2270888 -49242696 - MER69 DNA AcHobo -235 2291 2212 * 436 187 0 0 chrY 2270888 2270963 -49242621 - MER69 DNA AcHobo -2450 76 2 201 184 41 0 chrY 2271375 2271424 -49242160 + L2 LINE L2 3263 3313 0 273 352 95 11 chrY 2271563 2271742 -49241842 - MIR SINE MIR -34 228 35 486 333 27 31 chrY 2275962 2276087 -49237497 - MIR SINE MIR -29 233 109 979 171 114 30 chrY 2276087 2276247 -49237337 - MER33 DNA MER1_type -2261 324 179 204 40 0 0 chrY 2276247 2276272 -49237312 + (TTATA)n Simple_repeat Simple_repeat 5 29 0 1598 216 3 0 chrY 2276273 2276556 -49237028 - AluJo SINE Alu -28 284 1 979 171 114 30 chrY 2276556 2276572 -49237012 - MER33 DNA MER1_type -2406 179 166 297 51 0 0 chrY 2276572 2276611 -49236973 + (TG)n Simple_repeat Simple_repeat 1 39 0 979 171 114 30 chrY 2276611 2276730 -49236854 - MER33 DNA MER1_type -2419 166 1 486 333 27 31 chrY 2276730 2276826 -49236758 - MIR SINE MIR -153 109 13 364 236 157 39 chrY 2277763 2277941 -49235643 + MIR SINE MIR 49 247 -15 378 331 27 14 chrY 2278342 2278490 -49235094 + MIR SINE MIR 47 196 -66 312 279 49 103 chrY 2279633 2279837 -49233747 + L1M2 LINE L1 821 1013 -5836 342 0 0 0 chrY 2279877 2279915 -49233669 + (CA)n Simple_repeat Simple_repeat 1 38 0 276 111 0 0 chrY 2282916 2282961 -49230623 + (TG)n Simple_repeat Simple_repeat 2 46 0 22 0 0 0 chrY 2284754 2284776 -49228808 + AT_rich Low_complexity Low_complexity 1 22 0 321 302 26 17 chrY 2285127 2285243 -49228341 - L2 LINE L2 -10 3303 3187 23 54 0 0 chrY 2287988 2288025 -49225559 + AT_rich Low_complexity Low_complexity 1 37 0 380 253 44 0 chrY 2288878 2288969 -49224615 + MIR3 SINE MIR 86 180 -28 186 244 12 85 chrY 2289168 2289250 -49224334 - L2 LINE L2 -97 3216 3141 432 219 10 0 chrY 2289310 2289406 -49224178 - MIR3 SINE MIR -11 197 101 24 0 0 0 chrY 2289771 2289795 -49223789 + AT_rich Low_complexity Low_complexity 1 24 0 2311 83 0 13 chrY 2290285 2290598 -49222986 + AluSc SINE Alu 1 309 0 436 264 189 7 chrY 2291219 2291367 -49222217 - MER5A DNA MER1_type -2 187 13 2253 117 117 5 chrY 2292573 2292958 -49220626 - MSTA LTR MaLR 0 428 1 198 0 0 0 chrY 2293031 2293053 -49220531 + (T)n Simple_repeat Simple_repeat 1 22 0 2339 39 42 0 chrY 2293214 2293499 -49220085 - AluY SINE Alu -14 297 1 305 280 48 32 chrY 2294463 2294588 -49218996 - MIR SINE MIR -71 191 65 25 65 0 0 chrY 2294680 2294726 -49218858 + AT_rich Low_complexity Low_complexity 1 46 0 188 260 27 82 chrY 2295613 2295686 -49217898 - MIR SINE MIR -67 141 73 2198 120 22 33 chrY 2296111 2296479 -49217105 + THE1B LTR MaLR 1 364 0 332 184 81 14 chrY 2296626 2296724 -49216860 - MIR SINE MIR -100 108 1 254 329 128 34 chrY 2298136 2298285 -49215299 - MIR SINE MIR -91 171 9 23 86 0 0 chrY 2298286 2298344 -49215240 + AT_rich Low_complexity Low_complexity 1 58 0 1434 91 0 0 chrY 2299438 2299625 -49213959 + U2 snRNA snRNA 1 187 -1 2480 80 0 0 chrY 2299652 2299963 -49213621 + AluSx SINE Alu 1 311 -1 29 84 0 0 chrY 2300275 2300346 -49213238 + AT_rich Low_complexity Low_complexity 1 71 0 1955 122 0 14 chrY 2301604 2301900 -49211684 + AluSx SINE Alu 1 292 -20 1808 145 17 7 chrY 2302704 2303000 -49210584 + AluJb SINE Alu 2 300 -12 344 208 14 0 chrY 2304492 2304564 -49209020 - MER116 DNA Mariner -4 76 4 241 121 0 0 chrY 2304747 2304780 -49208804 + U2 snRNA snRNA 1 33 -155 655 322 89 13 chrY 2305317 2305553 -49208031 + MIR SINE MIR 9 262 0 26 30 0 0 chrY 2306178 2306211 -49207373 + AT_rich Low_complexity Low_complexity 1 33 0 1429 199 0 37 chrY 2307339 2307635 -49205949 + AluJo SINE Alu 1 285 -27 1550 191 0 16 chrY 2308851 2309155 -49204429 + AluJo SINE Alu 1 299 -13 23 0 0 0 chrY 2309803 2309826 -49203758 + AT_rich Low_complexity Low_complexity 1 23 0 2357 90 0 0 chrY 2310005 2310305 -49203279 + AluSg SINE Alu 1 300 -10 1056 148 64 35 chrY 2311396 2311599 -49201985 - MER3 DNA MER1_type 0 209 1 26 0 0 0 chrY 2313928 2313954 -49199630 + AT_rich Low_complexity Low_complexity 1 26 0 24 0 0 0 chrY 2315988 2316012 -49197572 + AT_rich Low_complexity Low_complexity 1 24 0 23 33 0 0 chrY 2316150 2316180 -49197404 + AT_rich Low_complexity Low_complexity 1 30 0 430 277 37 41 chrY 2316507 2316665 -49196919 - MIR3 SINE MIR -9 199 41 901 223 59 25 chrY 2316778 2316980 -49196604 - MIR SINE MIR -31 231 23 24 0 0 0 chrY 2316988 2317012 -49196572 + AT_rich Low_complexity Low_complexity 1 24 0 2013 90 0 0 chrY 2317676 2317931 -49195653 + AluSx SINE Alu 28 282 -30 722 253 56 5 chrY 2319326 2319524 -49194060 + MER3 DNA MER1_type 2 209 0 2147 92 20 14 chrY 2320220 2320514 -49193070 + AluY SINE Alu 3 298 -13 22 0 0 0 chrY 2321133 2321155 -49192429 + AT_rich Low_complexity Low_complexity 1 22 0 192 158 0 0 chrY 2321429 2321467 -49192117 + T-rich Low_complexity Low_complexity 1 38 0 42404 37 21 1 chrY 2321470 2327502 -49186082 - L1PA3 LINE L1 0 6155 1 5729 119 35 3 chrY 2328262 2329869 -49183715 - L1PA14 LINE L1 -2 6159 4522 2067 58 0 4 chrY 2329920 2330179 -49183405 - AluY SINE Alu -9 302 45 23 0 0 0 chrY 2331527 2331550 -49182034 + AT_rich Low_complexity Low_complexity 1 23 0 21 36 0 0 chrY 2333385 2333413 -49180171 + AT_rich Low_complexity Low_complexity 1 28 0 464 233 0 0 chrY 2333566 2333652 -49179932 + L2 LINE L2 3225 3310 -3 4880 40 0 5 chrY 2333850 2334443 -49179141 + L1PA5 LINE L1 5565 6154 0 1779 68 24 8 chrY 2334637 2334886 -49178698 - L1PA13 LINE L1 0 6163 5911 316 343 98 63 chrY 2336339 2336768 -49176816 - L3 LINE CR1 -2 1575 1132 21 0 0 0 chrY 2336919 2336940 -49176644 + AT_rich Low_complexity Low_complexity 1 21 0 685 81 0 10 chrY 2339077 2339176 -49174408 + L1M1 LINE L1 5505 5602 -700 213 362 76 19 chrY 2339260 2339365 -49174219 + MIR SINE MIR 36 146 -62 608 211 113 36 chrY 2339538 2339732 -49173852 + MER3 DNA MER1_type 1 209 0 300 357 18 9 chrY 2340898 2341010 -49172574 - MIR SINE MIR -65 143 31 1768 114 81 44 chrY 2341103 2341401 -49172183 + AluSx SINE Alu 3 311 -1 315 0 0 0 chrY 2345029 2345064 -49168520 + (TG)n Simple_repeat Simple_repeat 2 36 0 1797 154 10 35 chrY 2345067 2345379 -49168205 - AluSx SINE Alu -8 304 1 216 0 0 0 chrY 2346063 2346087 -49167497 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 24 32 0 0 chrY 2346402 2346433 -49167151 + AT_rich Low_complexity Low_complexity 1 31 0 2479 52 0 3 chrY 2348093 2348401 -49165183 + AluY SINE Alu 1 307 -4 333 0 0 0 chrY 2348905 2348942 -49164642 + (TG)n Simple_repeat Simple_repeat 2 38 0 820 215 0 0 chrY 2348947 2349105 -49164479 - FAM SINE Alu -17 158 1 1067 97 13 13 chrY 2349973 2350128 -49163456 - AluY SINE Alu -4 307 153 1275 132 4 22 chrY 2351058 2351285 -49162299 - L1PA14 LINE L1 -1 6160 5938 27 29 0 0 chrY 2353004 2353038 -49160546 + AT_rich Low_complexity Low_complexity 1 34 0 758 100 0 0 chrY 2353255 2353365 -49160219 - L1MA3 LINE L1 0 6305 6196 2419 76 0 3 chrY 2353797 2354100 -49159484 - AluSq SINE Alu -11 302 1 941 204 5 46 chrY 2354404 2354600 -49158984 - MER20 DNA MER1_type -1 218 31 9038 150 13 5 chrY 2355643 2358247 -49155337 - L1MA2 LINE L1 0 7723 5098 12382 136 11 13 chrY 2358250 2358789 -49154795 - L1PA10 LINE L1 -16 6152 5613 2368 111 17 14 chrY 2358789 2359150 -49154434 - THE1B LTR MaLR 0 364 3 10048 122 14 30 chrY 2359152 2360759 -49152825 - THE1B-int LTR MaLR 0 1580 1 12382 136 11 13 chrY 2360759 2363118 -49150466 - L1PA10 LINE L1 -556 5612 3279 1393 267 38 45 chrY 2363120 2363799 -49149785 - L1P3 LINE L1 -5088 787 2 14270 188 30 15 chrY 2363824 2366142 -49147442 - L1MA2 LINE L1 -2449 5116 2834 297 0 0 0 chrY 2366142 2366175 -49147409 + (TG)n Simple_repeat Simple_repeat 2 34 0 14270 188 30 15 chrY 2366175 2368594 -49144990 - L1MA2 LINE L1 -4731 2834 15 558 351 12 0 chrY 2371140 2371308 -49142276 + MIR3 SINE MIR 30 199 -9 190 315 0 19 chrY 2374230 2374284 -49139300 - L2 LINE L2 0 3272 3220 780 237 9 24 chrY 2374976 2375187 -49138397 + MER3 DNA MER1_type 2 209 0 345 47 0 0 chrY 2376796 2376839 -49136745 + (TG)n Simple_repeat Simple_repeat 2 44 0 2393 50 3 31 chrY 2377055 2377375 -49136209 - AluY SINE Alu 0 311 1 186 103 0 0 chrY 2377507 2377536 -49136048 + (A)n Simple_repeat Simple_repeat 1 29 0 1547 133 0 27 chrY 2377913 2378176 -49135408 + L1PB1 LINE L1 5895 6150 -1 378 335 73 43 chrY 2378255 2378419 -49135165 - MIR3 SINE MIR -10 198 30 38 39 0 0 chrY 2378490 2378542 -49135042 + AT_rich Low_complexity Low_complexity 1 52 0 183 80 0 0 chrY 2380637 2380662 -49132922 + (GAA)n Simple_repeat Simple_repeat 1 25 0 26 30 0 0 chrY 2383244 2383277 -49130307 + AT_rich Low_complexity Low_complexity 1 33 0 21 0 0 0 chrY 2384154 2384175 -49129409 + AT_rich Low_complexity Low_complexity 1 21 0 2510 44 0 0 chrY 2385323 2385617 -49127967 + AluY SINE Alu 1 294 -17 2446 80 0 3 chrY 2385707 2386020 -49127564 + AluSx SINE Alu 1 312 0 2630 36 0 0 chrY 2388140 2388447 -49125137 + AluY SINE Alu 1 307 -4 22 115 0 0 chrY 2388627 2388740 -49124844 + AT_rich Low_complexity Low_complexity 1 113 0 2586 51 0 0 chrY 2388828 2389139 -49124445 + AluY SINE Alu 1 311 0 1675 157 0 33 chrY 2390512 2390811 -49122773 + AluSx SINE Alu 1 289 -23 24 0 0 0 chrY 2390811 2390835 -49122749 + AT_rich Low_complexity Low_complexity 1 24 0 27 0 0 0 chrY 2391341 2391368 -49122216 + AT_rich Low_complexity Low_complexity 1 27 0 2006 112 22 0 chrY 2391458 2391760 -49121824 - AluSx SINE Alu 0 308 1 21 36 0 0 chrY 2392835 2392863 -49120721 + AT_rich Low_complexity Low_complexity 1 28 0 183 80 0 0 chrY 2394080 2394105 -49119479 + (A)n Simple_repeat Simple_repeat 1 25 0 252 0 0 0 chrY 2394160 2394188 -49119396 + (TG)n Simple_repeat Simple_repeat 2 29 0 232 348 135 23 chrY 2394268 2394711 -49118873 + L2 LINE L2 2438 2930 -384 918 54 0 0 chrY 2394845 2394957 -49118627 - AluSx SINE Alu -7 303 192 981 100 0 7 chrY 2394960 2395100 -49118484 - AluSx SINE Alu -174 139 1 756 21 0 0 chrY 2395496 2395589 -49117995 - AluY SINE Alu -2 309 217 2676 26 0 0 chrY 2396096 2396402 -49117182 - AluY SINE Alu -5 306 1 421 182 64 11 chrY 2398180 2398460 -49115124 + (TA)n Simple_repeat Simple_repeat 1 295 0 1573 167 28 24 chrY 2398603 2398890 -49114694 - AluJb SINE Alu -24 288 1 346 218 10 89 chrY 2399014 2399115 -49114469 - MIR3 SINE MIR -18 190 98 217 329 38 0 chrY 2399103 2399182 -49114402 - MIR SINE MIR -3 259 178 * 266 241 0 0 chrY 2400334 2400392 -49113192 - L2 LINE L2 -4 3268 3211 230 350 160 5 chrY 2400423 2400617 -49112967 + MIR SINE MIR 28 251 -11 306 243 90 36 chrY 2400626 2400737 -49112847 - MIR SINE MIR -56 206 90 250 365 39 10 chrY 2401056 2401160 -49112424 - MIR SINE MIR -72 136 30 294 266 40 65 chrY 2401279 2401403 -49112181 + MIR SINE MIR 30 150 -112 2206 149 61 28 chrY 2401490 2401994 -49111590 - MLT2A2 LTR ERVL -8 546 5 7340 97 10 5 chrY 2401998 2403061 -49110523 - HERVL-A2 LTR ERVL 0 5654 4545 367 351 34 13 chrY 2403465 2403681 -49109903 + MIR SINE MIR 18 241 -21 248 333 46 32 chrY 2403699 2403889 -49109695 - MIR SINE MIR -66 196 5 23 0 0 0 chrY 2404219 2404242 -49109342 + AT_rich Low_complexity Low_complexity 1 23 0 698 339 86 29 chrY 2404668 2405368 -49108216 + L2 LINE L2 1806 2545 -769 443 325 110 18 chrY 2405374 2405602 -49107982 - MIR SINE MIR 0 262 14 387 382 27 23 chrY 2405622 2405881 -49107703 + L2 LINE L2 2560 2819 -495 198 209 0 0 chrY 2406102 2406145 -49107439 + (TG)n Simple_repeat Simple_repeat 2 44 0 488 81 0 70 chrY 2406630 2406716 -49106868 - MADE1 DNA Mariner 0 80 1 546 222 25 49 chrY 2406953 2407115 -49106469 - L1ME4a LINE L1 -4 6117 5960 433 267 74 11 chrY 2407118 2407294 -49106290 - L1ME4a LINE L1 -264 5857 5671 1187 189 0 5 chrY 2407528 2407781 -49105803 - AluJb SINE Alu 0 312 89 298 325 162 7 chrY 2408886 2409040 -49104544 - MER5B DNA MER1_type 0 178 1 192 40 0 0 chrY 2409211 2409236 -49104348 + (TTAA)n Simple_repeat Simple_repeat 3 27 0 315 49 0 0 chrY 2409801 2409842 -49103742 + (CA)n Simple_repeat Simple_repeat 2 42 0 288 0 0 0 chrY 2409841 2409873 -49103711 + (GA)n Simple_repeat Simple_repeat 2 33 0 * 25 51 0 0 chrY 2409879 2409918 -49103666 + AT_rich Low_complexity Low_complexity 1 39 0 26 30 0 0 chrY 2409949 2409982 -49103602 + AT_rich Low_complexity Low_complexity 1 33 0 3146 89 2 0 chrY 2410062 2410501 -49103083 - L1PA13 LINE L1 -7 6156 5717 2768 124 2 47 chrY 2410501 2410962 -49102622 + L1P4 LINE L1 5041 5471 -697 2034 119 3 3 chrY 2410962 2411256 -49102328 + AluSx SINE Alu 1 294 -18 2768 124 2 47 chrY 2411256 2411462 -49102122 + L1P4 LINE L1 5471 5685 -483 23 0 0 0 chrY 2412026 2412049 -49101535 + AT_rich Low_complexity Low_complexity 1 23 0 1402 94 70 4 chrY 2412207 2412451 -49101133 - L1MA9 LINE L1 0 6312 6053 2540 118 5 19 chrY 2413750 2414173 -49099411 - L1MA3 LINE L1 0 6305 5889 4536 176 27 8 chrY 2414173 2415088 -49098496 - L1 LINE L1 -1445 4701 3769 14240 204 21 9 chrY 2415110 2420438 -49093146 + L1PBa LINE L1 1 5531 -1331 688 188 30 0 chrY 2420532 2420665 -49092919 - MLT1E2 LTR MaLR 0 626 490 6018 14 1 0 chrY 2421208 2421898 -49091686 - L1HS LINE L1 0 6155 5465 5313 19 10 0 chrY 2421888 2422621 -49090963 + L1P1 LINE L1 4753 5489 -666 * 4459 136 26 11 chrY 2425007 2425771 -49087813 - L1MC1 LINE L1 0 6333 5558 662 269 151 9 chrY 2426035 2426247 -49087337 - MIR SINE MIR 0 262 21 1903 125 33 111 chrY 2426289 2426657 -49086927 + Charlie3 DNA MER1_type 1 2712 0 902 107 23 0 chrY 2426946 2427077 -49086507 + HERVL-A2 LTR ERVL 5520 5653 -1 2077 160 49 31 chrY 2427078 2427621 -49085963 + MLT2A2 LTR ERVL 1 554 0 1865 100 55 17 chrY 2427626 2427916 -49085668 + L1PA16 LINE L1 5864 6164 -2 1590 239 100 28 chrY 2427938 2428399 -49085185 + MLT1D LTR MaLR 12 505 0 1964 163 22 8 chrY 2428938 2429299 -49084285 - MER47A DNA MER2_type 0 366 1 1182 241 14 58 chrY 2429871 2429924 -49083660 - MLT2D LTR ERVL 0 414 360 408 20 0 0 chrY 2429924 2429973 -49083611 + (CA)n Simple_repeat Simple_repeat 2 50 0 1182 241 14 58 chrY 2429973 2430267 -49083317 - MLT2D LTR ERVL -54 360 82 2095 143 40 3 chrY 2430546 2430923 -49082661 - L1MA5A LINE L1 -5 6292 5902 900 274 46 0 chrY 2431158 2431377 -49082207 - MIR SINE MIR -29 233 5 306 243 97 29 chrY 2431441 2431544 -49082040 - MIR3 SINE MIR -5 203 94 22 88 0 0 chrY 2432931 2432988 -49080596 + AT_rich Low_complexity Low_complexity 1 57 0 21 71 0 0 chrY 2433094 2433136 -49080448 + AT_rich Low_complexity Low_complexity 1 42 0 723 274 104 9 chrY 2433192 2433422 -49080162 - MIR SINE MIR -9 253 2 347 155 0 14 chrY 2434359 2434430 -49079154 + (TA)n Simple_repeat Simple_repeat 2 71 0 311 65 22 0 chrY 2434989 2435035 -49078549 + (TG)n Simple_repeat Simple_repeat 1 47 0 433 329 128 9 chrY 2435243 2435462 -49078122 + L3 LINE CR1 1331 1575 -2 2400 108 13 13 chrY 2435670 2436049 -49077535 - L1PA11 LINE L1 -3 6171 5793 358 321 9 32 chrY 2436185 2436483 -49077101 + GA-rich Low_complexity Low_complexity 1 291 0 296 111 19 0 chrY 2436502 2436556 -49077028 + (TG)n Simple_repeat Simple_repeat 1 55 0 3118 147 66 9 chrY 2439440 2440017 -49073567 - MER4B LTR ERV1 0 610 1 491 0 17 0 chrY 2440387 2440446 -49073138 + (TATAA)n Simple_repeat Simple_repeat 5 64 0 41 72 0 0 chrY 2440737 2440820 -49072764 + AT_rich Low_complexity Low_complexity 1 83 0 4754 257 62 56 chrY 2442083 2443825 -49069759 + L1MEc LINE L1 22 1751 -4645 1984 153 110 15 chrY 2443825 2444216 -49069368 + MSTA LTR MaLR 1 428 0 4754 257 62 56 chrY 2444216 2444406 -49069178 + L1MEc LINE L1 1751 1938 -4458 1455 194 25 18 chrY 2444406 2444689 -49068895 - AluJb SINE Alu -25 287 3 4754 257 62 56 chrY 2444689 2444866 -49068718 + L1MEc LINE L1 1938 2146 -4250 777 109 0 0 chrY 2444868 2444978 -49068606 + L1MA1 LINE L1 6099 6208 -94 4558 262 44 39 chrY 2444980 2446768 -49066816 + L1MEc LINE L1 2153 3910 -2305 3114 121 32 26 chrY 2446768 2447299 -49066285 + L1MC1 LINE L1 5798 6331 -2 4558 262 44 39 chrY 2447299 2447546 -49066038 + L1MEc LINE L1 3910 4154 -2061 405 0 0 0 chrY 2447880 2447925 -49065659 + (TG)n Simple_repeat Simple_repeat 2 46 0 486 0 0 0 chrY 2448905 2448959 -49064625 + (TA)n Simple_repeat Simple_repeat 2 55 0 23 33 0 0 chrY 2449554 2449584 -49064000 + AT_rich Low_complexity Low_complexity 1 30 0 354 297 54 9 chrY 2450025 2450136 -49063448 - MIR SINE MIR -76 186 71 23 54 0 0 chrY 2450197 2450234 -49063350 + AT_rich Low_complexity Low_complexity 1 37 0 21 0 0 0 chrY 2450527 2450548 -49063036 + AT_rich Low_complexity Low_complexity 1 21 0 1663 175 83 65 chrY 2452454 2452912 -49060672 - MER31B LTR ERV1 0 466 1 291 352 82 0 chrY 2453407 2453566 -49060018 + MIR3 SINE MIR 32 203 -5 2436 119 13 11 chrY 2454071 2454449 -49059135 - L1PB3 LINE L1 0 6154 5776 439 68 0 27 chrY 2454463 2454537 -49059047 + (TA)n Simple_repeat Simple_repeat 1 72 0 597 76 0 0 chrY 2454544 2454623 -49058961 - L1PB3 LINE L1 -366 5788 5710 382 250 76 0 chrY 2454670 2454762 -49058822 + L2 LINE L2 3179 3277 -36 7910 17 0 0 chrY 2455736 2456826 -49056758 - L1HS LINE L1 0 6155 5066 4880 102 20 12 chrY 2457609 2458360 -49055224 + L1MA1 LINE L1 5542 6298 -4 6185 102 12 1 chrY 2458975 2460433 -49053151 - L1PA11 LINE L1 0 6174 4705 9914 228 22 15 chrY 2460437 2463804 -49049780 - L1PA12 LINE L1 -3121 4463 9 4399 174 72 31 chrY 2464168 2464694 -49048890 - L1MA9 LINE L1 0 6312 5809 225 0 0 0 chrY 2464694 2464719 -49048865 + (TTCA)n Simple_repeat Simple_repeat 4 28 0 4399 174 72 31 chrY 2464719 2465433 -49048151 - L1MA9 LINE L1 -503 5809 5005 2082 136 3 0 chrY 2465433 2465741 -49047843 - AluSx SINE Alu -3 309 1 4399 174 72 31 chrY 2465741 2466057 -49047527 - L1MA9 LINE L1 -1307 5005 4703 4793 180 39 8 chrY 2466058 2466725 -49046859 + L1 LINE L1 3695 4340 -1806 2632 95 16 3 chrY 2466725 2467094 -49046490 - THE1C LTR MaLR -1 374 1 9654 142 11 32 chrY 2467094 2468708 -49044876 - THE1C-int LTR MaLR 0 1580 1 2635 117 0 3 chrY 2468708 2469084 -49044500 - THE1C LTR MaLR 0 375 1 4793 180 39 8 chrY 2469084 2469387 -49044197 + L1 LINE L1 4339 4697 -1449 2342 174 33 31 chrY 2470869 2471323 -49042261 - LOR1b LTR ERV1 -6 455 1 1769 58 8 8 chrY 2471439 2471679 -49041905 + L1PA6 LINE L1 5912 6151 -3 22 0 0 0 chrY 2471753 2471775 -49041809 + AT_rich Low_complexity Low_complexity 1 22 0 2260 90 0 27 chrY 2471822 2472156 -49041428 - L1PA8 LINE L1 0 6172 5848 2077 111 17 54 chrY 2472272 2472622 -49040962 + MER1B DNA MER1_type 1 337 0 215 284 136 0 chrY 2472927 2473015 -49040569 - MIR SINE MIR -111 151 52 224 360 61 0 chrY 2473420 2473534 -49040050 - MIR SINE MIR -67 141 21 1763 166 13 3 chrY 2474517 2474824 -49038760 + AluJo SINE Alu 2 311 -1 398 277 51 0 chrY 2474841 2474978 -49038606 + MIR SINE MIR 10 153 -109 704 139 61 0 chrY 2474978 2475093 -49038491 - LTR12 LTR ERV1 -234 480 359 350 210 0 0 chrY 2475093 2475174 -49038410 - LTR30 LTR ERV1 -98 624 544 1675 71 6 166 chrY 2475177 2475503 -49038081 - LTR12 LTR ERV1 -440 274 1 221 303 176 0 chrY 2475673 2475792 -49037792 + MIR SINE MIR 120 259 -3 778 161 54 0 chrY 2476785 2476934 -49036650 + L1MA8 LINE L1 5968 6124 -167 * 5511 23 2 10 chrY 2476927 2477792 -49035792 - L1PA2 LINE L1 -588 5567 4712 5297 66 3 17 chrY 2477754 2478506 -49035078 + L1PA2 LINE L1 5555 6260 -31 * 2438 89 0 0 chrY 2478506 2478810 -49034774 - AluSx SINE Alu -8 304 1 5297 66 3 17 chrY 2478810 2478841 -49034743 + L1PA2 LINE L1 6260 6290 -1 24 0 0 0 chrY 2478963 2478987 -49034597 + AT_rich Low_complexity Low_complexity 1 24 0 2939 266 88 27 chrY 2479257 2479641 -49033943 - L2 LINE L2 -214 3099 2740 2290 88 10 0 chrY 2479641 2479949 -49033635 - AluSp SINE Alu -2 311 1 2939 266 88 27 chrY 2479949 2480679 -49032905 - L2 LINE L2 -573 2740 1922 1129 167 0 0 chrY 2480945 2481131 -49032453 - AluJb SINE Alu -8 304 119 399 331 42 83 chrY 2483128 2483488 -49030096 + L2 LINE L2 2927 3271 -1 559 281 2 0 chrY 2484374 2484514 -49029070 - MIR SINE MIR -66 142 1 1142 152 193 16 chrY 2485388 2485631 -49027953 - AluJo SINE Alu -16 286 1 25 0 0 0 chrY 2485835 2485860 -49027724 + AT_rich Low_complexity Low_complexity 1 25 0 526 155 6 39 chrY 2485864 2486045 -49027539 + (TA)n Simple_repeat Simple_repeat 1 175 0 1188 124 10 36 chrY 2486508 2486702 -49026882 - THE1B LTR MaLR 0 364 176 195 259 35 71 chrY 2488281 2488366 -49025218 - L3 LINE CR1 -622 955 874 1098 131 33 25 chrY 2488489 2488705 -49024879 - THE1B LTR MaLR -161 214 1 1334 298 90 52 chrY 2489297 2490116 -49023468 - L1MEd LINE L1 -5267 852 3 2103 95 25 0 chrY 2490151 2490461 -49023123 + AluSg SINE Alu 1 317 0 1727 218 73 19 chrY 2491357 2491825 -49021759 - MLT1D LTR MaLR -6 499 7 1911 154 11 0 chrY 2492016 2492301 -49021283 - AluSx SINE Alu -24 288 1 21 0 0 0 chrY 2492951 2492972 -49020612 + AT_rich Low_complexity Low_complexity 1 21 0 343 305 15 8 chrY 2493099 2493230 -49020354 + CT-rich Low_complexity Low_complexity 3 134 0 198 47 0 70 chrY 2494166 2494200 -49019384 + (GAAAA)n Simple_repeat Simple_repeat 2 34 -7 2210 112 0 3 chrY 2494200 2494512 -49019072 + AluY SINE Alu 1 311 0 198 47 0 70 chrY 2494512 2494520 -49019064 + (GAAAA)n Simple_repeat Simple_repeat 34 41 0 246 240 53 0 chrY 2494637 2494712 -49018872 - MER103 DNA DNA -58 108 30 4733 215 35 90 chrY 2494712 2495077 -49018507 - L1MDa LINE L1 -4905 1635 1251 572 195 0 0 chrY 2495077 2495205 -49018379 - L1MA6 LINE L1 -5 6295 6168 4733 215 35 90 chrY 2495205 2496432 -49017152 - L1MDa LINE L1 -5289 1251 131 22 70 0 0 chrY 2496708 2496751 -49016833 + AT_rich Low_complexity Low_complexity 1 43 0 331 286 185 0 chrY 2497667 2497786 -49015798 - MIR SINE MIR -65 197 57 252 406 0 0 chrY 2497924 2498020 -49015564 - L2 LINE L2 -16 3256 3161 22 35 0 0 chrY 2498450 2498479 -49015105 + AT_rich Low_complexity Low_complexity 1 29 0 4824 177 41 35 chrY 2498971 2500770 -49012814 - L1MA9 LINE L1 0 6312 4527 2378 66 30 3 chrY 2500770 2501073 -49012511 - AluY SINE Alu 0 311 1 2309 88 3 10 chrY 2501073 2501381 -49012203 - AluSq SINE Alu -7 306 1 4824 177 41 35 chrY 2501381 2501462 -49012122 - L1MA9 LINE L1 -1784 4528 4411 2359 176 7 25 chrY 2501462 2501899 -49011685 + Tigger2a DNA MER2_type 1 429 -5 4869 180 34 23 chrY 2501919 2502848 -49010736 - L1MA9 LINE L1 -1754 4392 3446 2191 129 0 0 chrY 2502848 2503158 -49010426 - AluSx SINE Alu -1 311 2 4869 180 34 23 chrY 2503158 2503377 -49010207 - L1MA9 LINE L1 -2700 3446 3231 215 404 22 29 chrY 2503640 2503776 -49009808 + L2 LINE L2 3119 3253 -19 1669 190 7 7 chrY 2503809 2504119 -49009465 - AluJb SINE Alu -2 310 1 19410 177 17 15 chrY 2505345 2506364 -49007220 - L1MA1 LINE L1 -5 7716 6701 2282 107 3 0 chrY 2506364 2506673 -49006911 - AluSp SINE Alu -3 310 1 19410 177 17 15 chrY 2506673 2509670 -49003914 - L1MA1 LINE L1 -1020 6701 3712 2452 75 3 0 chrY 2509670 2509976 -49003608 - AluY SINE Alu -4 307 1 19410 177 17 15 chrY 2509976 2513629 -48999955 - L1MA1 LINE L1 -4009 3712 14 2157 113 3 7 chrY 2514599 2514908 -48998676 - AluSx SINE Alu -4 308 1 3953 170 20 0 chrY 2515629 2516318 -48997266 - L1PA16 LINE L1 -2 6164 5462 318 364 52 13 chrY 2516689 2516843 -48996741 - MIR3 SINE MIR -14 194 35 24 0 0 0 chrY 2516853 2516877 -48996707 + AT_rich Low_complexity Low_complexity 1 24 0 13532 138 13 65 chrY 2517643 2517816 -48995768 - Tigger1 DNA MER2_type -1 2417 2237 11474 32 1 1 chrY 2517816 2519950 -48993634 + L1PA4 LINE L1 4022 6155 0 13532 138 13 65 chrY 2519950 2519968 -48993616 - Tigger1 DNA MER2_type -181 2237 2220 258 81 0 0 chrY 2519968 2520005 -48993579 + (TAAAA)n Simple_repeat Simple_repeat 2 38 0 13532 138 13 65 chrY 2520005 2522079 -48991505 - Tigger1 DNA MER2_type -198 2220 40 1237 114 10 0 chrY 2522079 2522280 -48991304 + L1MA2 LINE L1 6102 6304 0 13532 138 13 65 chrY 2522280 2522334 -48991250 - Tigger1 DNA MER2_type -2378 40 236 1655 164 0 41 chrY 2522334 2522627 -48990957 + AluSx SINE Alu 5 285 -27 13532 138 13 65 chrY 2522627 2522853 -48990731 - Tigger1 DNA MER2_type -2181 237 1 398 358 11 21 chrY 2523390 2523580 -48990004 - MARNA DNA Mariner -398 188 1 1783 183 30 3 chrY 2523912 2524212 -48989372 + L1PA13 LINE L1 2 309 -6478 * 2035 242 17 0 chrY 2524200 2524667 -48988917 + L1P LINE L1 2551 3025 -3121 25406 151 20 16 chrY 2524691 2530257 -48983327 + L1PA13 LINE L1 339 5990 -807 5876 109 12 2 chrY 2530256 2531121 -48982463 + L1PA13 LINE L1 5266 6138 -25 * 1148 202 37 0 chrY 2531121 2531364 -48982220 + MER58B DNA MER1_type 90 341 0 21 0 0 0 chrY 2532924 2532945 -48980639 + AT_rich Low_complexity Low_complexity 1 21 0 970 265 109 3 chrY 2533316 2533629 -48979955 + L2 LINE L2 2556 2901 -413 2131 116 0 0 chrY 2534898 2535183 -48978401 - AluSc SINE Alu -24 285 1 7789 161 15 6 chrY 2535275 2537780 -48975804 - L1MA2 LINE L1 0 7723 5194 1305 183 39 4 chrY 2537793 2538023 -48975561 - AluJb SINE Alu -73 239 2 9395 176 20 12 chrY 2538024 2541209 -48972375 - L1MA2 LINE L1 -2360 5205 1994 2060 149 30 25 chrY 2541220 2541582 -48972002 + THE1B LTR MaLR 1 364 0 2670 80 11 0 chrY 2541582 2541946 -48971638 + THE1B-int LTR MaLR 1 368 -1212 285 29 0 0 chrY 2541948 2541982 -48971602 + (TTTTA)n Simple_repeat Simple_repeat 1 34 0 6081 92 17 27 chrY 2541982 2542937 -48970647 - L1PA8 LINE L1 -24 6148 5199 4244 125 16 0 chrY 2542926 2543550 -48970034 + THE1B-int LTR MaLR 350 983 -597 * 278 75 0 0 chrY 2543542 2543582 -48970002 + THE1B-int LTR MaLR 1541 1580 0 * 2131 146 34 14 chrY 2543582 2543938 -48969646 + THE1B LTR MaLR 1 363 -1 424 232 0 0 chrY 2543966 2544048 -48969536 - L1MA2 LINE L1 -5656 1909 1828 8659 190 40 10 chrY 2544059 2545694 -48967890 - L1MA2 LINE L1 -5861 1704 21 1082 150 9 9 chrY 2545899 2546112 -48967472 - L1MA4A LINE L1 -1 6302 6090 2161 112 3 0 chrY 2546617 2546911 -48966673 + AluSg SINE Alu 1 295 -15 28 0 0 0 chrY 2547080 2547108 -48966476 + AT_rich Low_complexity Low_complexity 1 28 0 32 0 0 0 chrY 2547133 2547165 -48966419 + AT_rich Low_complexity Low_complexity 1 32 0 2216 91 3 13 chrY 2547560 2547868 -48965716 - AluSg1 SINE Alu -4 305 1 25 0 0 0 chrY 2549040 2549065 -48964519 + AT_rich Low_complexity Low_complexity 1 25 0 2210 104 3 0 chrY 2550588 2550886 -48962698 + AluSx SINE Alu 1 299 -13 757 272 30 5 chrY 2550993 2551195 -48962389 - MER63A DNA MER1_type -3 207 1 5463 74 12 19 chrY 2553650 2554422 -48959162 - MER4E LTR ERV1 0 766 1 25 51 0 0 chrY 2554576 2554615 -48958969 + AT_rich Low_complexity Low_complexity 1 39 0 1925 120 27 3 chrY 2554707 2555007 -48958577 - AluSq SINE Alu -6 307 1 656 233 14 20 chrY 2555395 2555541 -48958043 + MIR SINE MIR 4 148 -114 215 330 34 42 chrY 2555590 2555708 -48957876 + L2 LINE L2 3192 3308 -5 413 236 9 0 chrY 2556724 2556830 -48956754 + L1MB7 LINE L1 6066 6172 -12 2250 95 7 0 chrY 2558514 2558808 -48954776 - AluSg SINE Alu -11 299 4 335 301 91 50 chrY 2558818 2559017 -48954567 - MIR SINE MIR -22 240 34 2562 64 3 0 chrY 2559482 2559793 -48953791 + AluSp SINE Alu 2 313 0 5701 92 19 14 chrY 2560501 2561644 -48951940 - L1PA13 LINE L1 -3 6160 4980 26 88 0 0 chrY 2561649 2561717 -48951867 + AT_rich Low_complexity Low_complexity 1 68 0 811 214 17 12 chrY 2563178 2563351 -48950233 + L1PB4 LINE L1 5980 6153 -3 21 0 0 0 chrY 2563430 2563451 -48950133 + AT_rich Low_complexity Low_complexity 1 21 0 252 271 36 79 chrY 2564227 2564367 -48949217 - MIR SINE MIR -55 207 74 6008 184 25 7 chrY 2565263 2566721 -48946863 - L1PA15 LINE L1 -3 6813 5298 180 97 0 0 chrY 2566721 2566752 -48946832 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 6008 184 25 7 chrY 2566752 2567469 -48946115 - L1PA15 LINE L1 -1518 5298 4595 6454 54 8 0 chrY 2567469 2568288 -48945296 + L1PA7 LINE L1 5329 6154 0 28 0 0 0 chrY 2568299 2568327 -48945257 + AT_rich Low_complexity Low_complexity 1 28 0 3198 282 22 15 chrY 2568327 2569248 -48944336 - L1PA15 LINE L1 -4818 1969 1043 876 246 0 47 chrY 2569323 2569447 -48944137 - L1ME2 LINE L1 -16 6148 6041 286 23 47 0 chrY 2569447 2569490 -48944094 + (TAAA)n Simple_repeat Simple_repeat 2 46 0 876 246 0 47 chrY 2569490 2569621 -48943963 - L1ME2 LINE L1 -123 6041 5905 13601 171 38 48 chrY 2570101 2571776 -48941808 - L1MA2 LINE L1 -450 7273 5582 1871 159 3 0 chrY 2571776 2572066 -48941518 + AluSx SINE Alu 2 292 -20 13601 171 38 48 chrY 2572066 2573508 -48940076 - L1MA2 LINE L1 -2141 5582 4126 2094 127 0 0 chrY 2573508 2573792 -48939792 - AluSx SINE Alu -28 284 1 13601 171 38 48 chrY 2573792 2574630 -48938954 - L1MA2 LINE L1 -3597 4126 3281 1900 157 0 14 chrY 2574630 2574923 -48938661 - AluSx SINE Alu -23 289 1 13601 171 38 48 chrY 2574923 2575739 -48937845 - L1MA2 LINE L1 -4442 3281 2458 2115 119 0 17 chrY 2575739 2576041 -48937543 - AluSg SINE Alu -12 298 2 13601 171 38 48 chrY 2576041 2578327 -48935257 - L1MA2 LINE L1 -5265 2458 11 339 378 10 31 chrY 2580194 2580387 -48933197 - MER5A DNA MER1_type 0 189 1 259 248 103 43 chrY 2580709 2580826 -48932758 - MIR SINE MIR -66 196 73 439 313 27 0 chrY 2582003 2582115 -48931469 - L2 LINE L2 -2 3270 3156 180 365 16 0 chrY 2582186 2582249 -48931335 + L2 LINE L2 3205 3268 -4 194 466 0 8 chrY 2582266 2582399 -48931185 + MIR SINE MIR 16 147 -61 525 32 0 0 chrY 2582553 2582616 -48930968 + (GGAA)n Simple_repeat Simple_repeat 3 65 0 642 158 88 0 chrY 2584003 2584117 -48929467 - MLT1D LTR MaLR -22 483 360 827 254 29 10 chrY 2584151 2584356 -48929228 - MER82 DNA MER2_type -1 652 444 312 342 50 20 chrY 2584387 2584586 -48928998 + MIR SINE MIR 1 205 -57 399 250 0 21 chrY 2584606 2584702 -48928882 - MER82 DNA MER2_type -559 94 1 1470 230 83 35 chrY 2584813 2585295 -48928289 + MLT1D LTR MaLR 1 505 0 2739 173 38 6 chrY 2585532 2586057 -48927527 - MER34 LTR ERV1 0 542 1 285 165 51 51 chrY 2586082 2586161 -48927423 + MER69 DNA AcHobo 67 145 -1081 277 217 0 0 chrY 2586185 2586245 -48927339 + MER69 DNA AcHobo 2467 2526 0 318 132 0 0 chrY 2586650 2586703 -48926881 + (CA)n Simple_repeat Simple_repeat 2 54 0 629 306 5 24 chrY 2586886 2587092 -48926492 - MIR SINE MIR -48 214 13 2109 86 7 11 chrY 2588743 2589022 -48924562 + AluSg SINE Alu 1 278 -32 2092 123 3 0 chrY 2589161 2589462 -48924122 + AluSp SINE Alu 1 302 -11 675 253 154 6 chrY 2589880 2590186 -48923398 - MER57A LTR ERV1 -4 398 60 242 338 12 0 chrY 2590199 2590279 -48923305 - MER93a LTR ERV1 -321 81 1 180 0 0 0 chrY 2590384 2590404 -48923180 + (A)n Simple_repeat Simple_repeat 1 20 0 1203 215 56 34 chrY 2590730 2591053 -48922531 + MER33 DNA MER1_type 1 316 -8 193 75 50 0 chrY 2591165 2591205 -48922379 + A-rich Low_complexity Low_complexity 3 44 0 3653 95 21 83 chrY 2591669 2592051 -48921533 - LTR66 LTR ERVL 0 610 283 2060 113 13 3 chrY 2592051 2592353 -48921231 - AluSp SINE Alu -8 305 1 3653 95 21 83 chrY 2592353 2592620 -48920964 - LTR66 LTR ERVL -327 283 1 229 129 69 0 chrY 2592865 2592981 -48920603 + (TA)n Simple_repeat Simple_repeat 1 124 0 189 0 0 0 chrY 2593915 2593936 -48919648 + (CAAAA)n Simple_repeat Simple_repeat 1 21 0 2420 99 0 0 chrY 2594506 2594810 -48918774 - AluSq SINE Alu -8 305 2 5542 70 16 19 chrY 2596358 2597127 -48916457 - MER4E LTR ERV1 0 766 1 1375 163 11 70 chrY 2597288 2597655 -48915929 - MER4A LTR ERV1 0 664 261 511 132 22 11 chrY 2597656 2597747 -48915837 - MER4A LTR ERV1 -572 92 1 2208 138 66 17 chrY 2597749 2598156 -48915428 + MSTA LTR MaLR 2 428 0 297 0 0 0 chrY 2599076 2599109 -48914475 + (TG)n Simple_repeat Simple_repeat 2 34 0 23 0 0 0 chrY 2599116 2599139 -48914445 + AT_rich Low_complexity Low_complexity 1 23 0 279 114 0 0 chrY 2601352 2601396 -48912188 + (TG)n Simple_repeat Simple_repeat 2 45 0 1969 119 53 44 chrY 2601430 2601791 -48911793 - THE1B LTR MaLR 0 364 1 1536 185 34 7 chrY 2602050 2602342 -48911242 + AluJo SINE Alu 1 300 -12 213 164 18 55 chrY 2602612 2602645 -48910939 + (TATATG)n Simple_repeat Simple_repeat 6 38 -20 1296 186 83 31 chrY 2602645 2602972 -48910612 + MER2 DNA MER2_type 1 344 0 213 164 18 55 chrY 2602972 2602993 -48910591 + (TATATG)n Simple_repeat Simple_repeat 38 58 0 22 0 0 0 chrY 2603317 2603339 -48910245 + AT_rich Low_complexity Low_complexity 1 22 0 2410 94 3 0 chrY 2603550 2603859 -48909725 - AluSp SINE Alu -3 310 1 24 0 0 0 chrY 2605007 2605031 -48908553 + AT_rich Low_complexity Low_complexity 1 24 0 3294 69 5 7 chrY 2605149 2605598 -48907986 - LTR7 LTR ERV1 -2 448 1 2267 84 65 14 chrY 2605598 2605969 -48907615 - HERVH LTR ERV1 0 7713 7324 1326 119 18 9 chrY 2605969 2606187 -48907397 - HERVH LTR ERV1 -1894 5819 5600 3933 146 11 3 chrY 2606188 2606845 -48906739 - HERVH LTR ERV1 -2564 5149 4488 3146 113 4 6 chrY 2606847 2607350 -48906234 - HERVH LTR ERV1 -3720 3993 3492 816 155 20 0 chrY 2607340 2607488 -48906096 - HERVH LTR ERV1 -4423 3290 3140 * 14417 110 26 17 chrY 2607482 2610338 -48903246 - HERVH LTR ERV1 -4726 2987 1 3465 56 2 7 chrY 2610340 2610790 -48902794 - LTR7 LTR ERV1 -2 448 1 322 362 62 18 chrY 2611025 2611301 -48902283 - L1M4 LINE L1 -1491 4655 4368 3263 124 53 51 chrY 2611652 2612257 -48901327 + MER4B LTR ERV1 5 610 0 1687 53 5 5 chrY 2612337 2612544 -48901040 + AluSp SINE Alu 1 207 -106 1791 68 0 0 chrY 2612545 2612780 -48900804 + MER4E LTR ERV1 532 766 0 3011 142 29 107 chrY 2613788 2613983 -48899601 - LTR8 LTR ERV1 0 691 482 1954 107 50 11 chrY 2613983 2614264 -48899320 + AluSx SINE Alu 1 292 -20 3011 142 29 107 chrY 2614264 2614817 -48898767 - LTR8 LTR ERV1 -209 482 1 523 128 248 8 chrY 2615268 2615385 -48898199 - MER4C LTR ERV1 -21 444 300 1059 177 125 26 chrY 2615447 2615758 -48897826 - MER4A LTR ERV1 -322 342 1 216 0 0 0 chrY 2616101 2616125 -48897459 + (A)n Simple_repeat Simple_repeat 1 24 0 23 33 0 0 chrY 2616360 2616390 -48897194 + AT_rich Low_complexity Low_complexity 1 30 0 393 323 63 32 chrY 2616459 2616618 -48896966 - MIR3 SINE MIR -9 199 32 1951 67 86 4 chrY 2616618 2616911 -48896673 - AluY SINE Alu 0 311 1 393 323 63 32 chrY 2616911 2616940 -48896644 - MIR3 SINE MIR -176 32 5 204 40 0 0 chrY 2616963 2616988 -48896596 + (A)n Simple_repeat Simple_repeat 1 25 0 1825 92 92 4 chrY 2619690 2619991 -48893593 - AluSx SINE Alu 0 324 1 1853 230 69 41 chrY 2620308 2620847 -48892737 - MLT2B3 LTR ERVL 0 554 1 180 77 0 0 chrY 2621451 2621477 -48892107 + (TTTA)n Simple_repeat Simple_repeat 3 28 0 1742 163 3 7 chrY 2621481 2621770 -48891814 - AluJb SINE Alu -24 288 1 26 0 0 0 chrY 2621773 2621799 -48891785 + AT_rich Low_complexity Low_complexity 1 26 0 310 396 0 0 chrY 2621855 2621994 -48891590 + MIR3 SINE MIR 64 202 -6 2011 116 7 3 chrY 2622042 2622335 -48891249 + AluSq SINE Alu 6 299 -14 2551 57 0 0 chrY 2623618 2623915 -48889669 - AluY SINE Alu -14 297 1 202 147 53 53 chrY 2623935 2623992 -48889592 + (TTAA)n Simple_repeat Simple_repeat 2 61 -15 1859 142 10 7 chrY 2623992 2624281 -48889303 - AluJb SINE Alu -22 290 1 202 147 53 53 chrY 2624281 2624298 -48889286 + (TTAA)n Simple_repeat Simple_repeat 60 76 0 25 75 0 0 chrY 2624529 2624582 -48889002 + AT_rich Low_complexity Low_complexity 1 53 0 2210 109 0 0 chrY 2625026 2625328 -48888256 - AluSg1 SINE Alu -7 302 1 2372 92 3 0 chrY 2626016 2626321 -48887263 - AluSx SINE Alu -2 310 5 1534 80 11 0 chrY 2626587 2626798 -48886786 - AluSc SINE Alu 0 305 93 2086 110 11 0 chrY 2626846 2627158 -48886426 - AluSq SINE Alu 0 315 1 2033 127 0 0 chrY 2627539 2627823 -48885761 + AluSx SINE Alu 9 292 -20 987 310 163 23 chrY 2628238 2629062 -48884522 + L2 LINE L2 2098 3066 -247 487 256 60 88 chrY 2629140 2629210 -48884374 - MER102b DNA MER1_type -1087 341 271 1970 144 7 0 chrY 2629210 2629502 -48884082 + AluSp SINE Alu 1 294 -19 487 256 60 88 chrY 2629502 2629782 -48883802 - MER102b DNA MER1_type -1157 271 1 591 266 32 7 chrY 2629788 2629942 -48883642 + L2 LINE L2 3156 3313 0 1265 71 0 0 chrY 2630590 2630758 -48882826 - L1PA5 LINE L1 0 6154 5987 2214 112 0 0 chrY 2630786 2631102 -48882482 + AluSq SINE Alu 1 316 0 2243 114 7 0 chrY 2631273 2631581 -48882003 + AluSp SINE Alu 2 311 -2 34 55 0 0 chrY 2631581 2631636 -48881948 + AT_rich Low_complexity Low_complexity 1 55 0 381 22 0 0 chrY 2631658 2631704 -48881880 + (TG)n Simple_repeat Simple_repeat 2 47 0 22 0 0 0 chrY 2631750 2631772 -48881812 + AT_rich Low_complexity Low_complexity 1 22 0 23 33 0 0 chrY 2632155 2632185 -48881399 + AT_rich Low_complexity Low_complexity 1 30 0 2233 106 0 7 chrY 2632481 2632784 -48880800 - AluSg SINE Alu -9 301 1 2216 103 0 7 chrY 2633365 2633666 -48879918 - AluSx SINE Alu -13 299 1 25 31 0 0 chrY 2633704 2633736 -48879848 + AT_rich Low_complexity Low_complexity 1 32 0 22 70 0 0 chrY 2633946 2633989 -48879595 + AT_rich Low_complexity Low_complexity 1 43 0 2115 93 4 4 chrY 2634080 2634360 -48879224 + AluSg SINE Alu 1 280 -30 948 297 86 26 chrY 2634386 2634877 -48878707 - MER34 LTR ERV1 -18 524 5 243 146 0 0 chrY 2634929 2634970 -48878614 + (CA)n Simple_repeat Simple_repeat 2 42 0 2326 77 7 17 chrY 2635340 2635640 -48877944 + AluSp SINE Alu 3 299 -14 4633 70 55 23 chrY 2636396 2636957 -48876627 - PABL_A LTR ERV1 0 660 118 2366 81 0 26 chrY 2636957 2637267 -48876317 + AluSq SINE Alu 1 302 -11 2263 83 0 17 chrY 2637267 2637567 -48876017 + AluSc SINE Alu 1 295 -14 504 117 0 0 chrY 2637568 2637645 -48875939 + (TA)n Simple_repeat Simple_repeat 1 77 0 4633 70 55 23 chrY 2637645 2637720 -48875864 - PABL_A LTR ERV1 -541 119 1 30 45 0 0 chrY 2637970 2638014 -48875570 + AT_rich Low_complexity Low_complexity 1 44 0 2183 102 7 0 chrY 2638293 2638598 -48874986 - AluSp SINE Alu -6 307 1 3666 101 21 62 chrY 2638723 2639349 -48874235 - MER4A LTR ERV1 0 600 1 189 0 0 0 chrY 2639409 2639430 -48874154 + (A)n Simple_repeat Simple_repeat 1 21 0 3541 107 57 0 chrY 2639459 2639983 -48873601 - MER41A LTR ERV1 0 554 1 345 47 0 0 chrY 2640685 2640728 -48872856 + (TG)n Simple_repeat Simple_repeat 1 43 0 793 231 74 9 chrY 2641119 2641335 -48872249 - L2 LINE L2 -280 3033 2804 1048 254 17 7 chrY 2641354 2641649 -48871935 + MER58B DNA MER1_type 44 341 0 529 268 12 48 chrY 2641656 2641824 -48871760 - L2 LINE L2 -507 2807 2646 998 186 12 0 chrY 2641922 2642094 -48871490 - FAM SINE Alu 0 175 2 1448 153 10 45 chrY 2642466 2642780 -48870804 - L1MB8 LINE L1 -15 6163 5861 3296 89 9 2 chrY 2642785 2643247 -48870337 - L1PA10 LINE L1 -2 6166 5702 225 135 27 81 chrY 2643396 2643470 -48870114 + A-rich Low_complexity Low_complexity 1 70 0 2200 90 42 3 chrY 2644204 2644493 -48869091 - AluSg SINE Alu 0 310 11 203 294 18 18 chrY 2645066 2645175 -48868409 + (TA)n Simple_repeat Simple_repeat 1 109 0 21 0 0 0 chrY 2646571 2646592 -48866992 + AT_rich Low_complexity Low_complexity 1 21 0 1847 79 18 129 chrY 2647086 2647426 -48866158 - AluSp SINE Alu -1 302 1 2855 16 0 6 chrY 2647728 2648048 -48865536 - AluYb8 SINE Alu 0 318 1 419 186 10 0 chrY 2648104 2648206 -48865378 + (CA)n Simple_repeat Simple_repeat 2 104 0 1538 198 0 11 chrY 2648244 2648527 -48865057 + AluJb SINE Alu 1 280 -32 7392 94 5 17 chrY 2648529 2649567 -48864017 + THE1A-int LTR MaLR 556 1580 0 2463 91 3 0 chrY 2649567 2649897 -48863687 + THE1A LTR MaLR 1 331 -24 22 0 0 0 chrY 2650844 2650866 -48862718 + AT_rich Low_complexity Low_complexity 1 22 0 2105 128 0 0 chrY 2651978 2652276 -48861308 + AluSx SINE Alu 1 298 -14 941 111 6 18 chrY 2653048 2653171 -48860413 + (TTCC)n Simple_repeat Simple_repeat 1 290 0 941 111 6 18 chrY 2653171 2653342 -48860242 + (TTCC)n Simple_repeat Simple_repeat 3 171 0 798 177 0 17 chrY 2653359 2653540 -48860044 + CT-rich Low_complexity Low_complexity 3 180 0 2068 98 39 0 chrY 2653560 2653846 -48859738 - AluSx SINE Alu -15 297 1 23 33 0 0 chrY 2653945 2653975 -48859609 + AT_rich Low_complexity Low_complexity 1 30 0 198 143 0 0 chrY 2654073 2654108 -48859476 + (TA)n Simple_repeat Simple_repeat 2 36 0 297 0 0 0 chrY 2654108 2654141 -48859443 + (CA)n Simple_repeat Simple_repeat 2 34 0 189 74 0 0 chrY 2654746 2654773 -48858811 + (TC)n Simple_repeat Simple_repeat 2 28 0 180 0 0 0 chrY 2654774 2654794 -48858790 + (TG)n Simple_repeat Simple_repeat 1 20 0 369 109 0 0 chrY 2654794 2654849 -48858735 + (TA)n Simple_repeat Simple_repeat 1 55 0 2907 258 25 22 chrY 2654914 2655820 -48857764 - L1ME1 LINE L1 -1 6165 5257 253 212 0 15 chrY 2655901 2655967 -48857617 - L1ME1 LINE L1 -1465 4681 4617 1082 266 143 22 chrY 2655970 2656502 -48857082 - L1ME1 LINE L1 -1592 4554 3929 2371 71 0 0 chrY 2656502 2656825 -48856759 - AluY SINE Alu 0 311 1 1082 266 143 22 chrY 2656825 2656936 -48856648 - L1ME1 LINE L1 -2217 3929 3833 22 0 0 0 chrY 2657726 2657748 -48855836 + AT_rich Low_complexity Low_complexity 1 22 0 39 50 0 0 chrY 2658023 2658083 -48855501 + AT_rich Low_complexity Low_complexity 1 60 0 198 0 0 0 chrY 2658083 2658105 -48855479 + (TATG)n Simple_repeat Simple_repeat 3 24 0 2167 98 40 0 chrY 2658105 2658401 -48855183 - AluSx SINE Alu -4 308 1 297 0 0 0 chrY 2658651 2658684 -48854900 + (CA)n Simple_repeat Simple_repeat 2 34 0 3876 128 71 46 chrY 2659753 2660517 -48853067 + LTR1 LTR ERV1 1 783 -2 1104 245 93 117 chrY 2660724 2660941 -48852643 + L2 LINE L2 2374 2595 -718 2458 62 0 10 chrY 2660941 2661250 -48852334 - AluY SINE Alu -4 307 2 1104 245 93 117 chrY 2661250 2661994 -48851590 + L2 LINE L2 2595 3313 0 22 80 0 0 chrY 2663111 2663161 -48850423 + AT_rich Low_complexity Low_complexity 1 50 0 2070 128 0 7 chrY 2663282 2663587 -48849997 + AluSq SINE Alu 1 303 -10 1542 135 0 0 chrY 2663664 2663886 -48849698 + AluSg/x SINE Alu 85 306 -4 2144 109 0 0 chrY 2663995 2664279 -48849305 - AluSc SINE Alu -25 284 1 26 50 0 0 chrY 2664742 2664782 -48848802 + AT_rich Low_complexity Low_complexity 1 40 0 1642 156 158 18 chrY 2664980 2665416 -48848168 - LTR54B LTR ERV1 -1 497 1 219 114 0 0 chrY 2665425 2665460 -48848124 + (TTTA)n Simple_repeat Simple_repeat 2 36 0 2925 135 12 6 chrY 2665509 2666318 -48847266 - L1PB1 LINE L1 0 6867 5922 * 8645 132 51 9 chrY 2666311 2667391 -48846193 - L1PB1 LINE L1 -4152 2711 1678 2173 129 0 0 chrY 2667391 2667686 -48845898 - AluSx SINE Alu -15 297 3 8645 132 51 9 chrY 2667686 2669066 -48844518 - L1PB1 LINE L1 -5185 1678 2 2327 125 5 35 chrY 2669901 2670276 -48843308 + THE1B LTR MaLR 1 364 0 21 0 0 0 chrY 2671296 2671317 -48842267 + AT_rich Low_complexity Low_complexity 1 21 0 1483 216 14 7 chrY 2671812 2672108 -48841476 + AluJo SINE Alu 1 298 -14 2486 45 0 0 chrY 2672465 2672752 -48840832 + AluY SINE Alu 15 301 -10 1557 193 0 0 chrY 2673485 2673739 -48839845 - AluJb SINE Alu -58 254 1 1493 173 108 0 chrY 2673772 2674097 -48839487 + AluJb SINE Alu 5 359 0 529 266 76 11 chrY 2674204 2674388 -48839196 - MIR3 SINE MIR -5 203 8 268 235 0 0 chrY 2675215 2675266 -48838318 - L2 LINE L2 -9 3304 3254 309 270 21 159 chrY 2675332 2675521 -48838063 - L2 LINE L2 -55 3217 3055 1231 173 20 123 chrY 2676108 2676302 -48837282 - AluJo SINE Alu -5 307 161 2237 115 0 0 chrY 2676302 2676615 -48836969 - AluSq SINE Alu 0 313 1 1231 173 20 123 chrY 2676615 2676762 -48836822 - AluJo SINE Alu -151 161 1 223 184 0 0 chrY 2676847 2676887 -48836697 - MIR SINE MIR -63 145 111 293 259 47 12 chrY 2676932 2677017 -48836567 - MER5B DNA MER1_type -2 176 89 1675 256 130 19 chrY 2677021 2677123 -48836461 - L1 LINE L1 -1439 4707 4618 1901 149 17 3 chrY 2677123 2677419 -48836165 - AluSx SINE Alu -12 300 1 1675 256 130 19 chrY 2677419 2678006 -48835578 - L1 LINE L1 -1528 4618 3941 1160 133 23 0 chrY 2678045 2678218 -48835366 - FRAM SINE Alu -4 172 1 21 0 0 0 chrY 2679015 2679036 -48834548 + AT_rich Low_complexity Low_complexity 1 21 0 2399 76 3 0 chrY 2679858 2680162 -48833422 - AluSp SINE Alu -8 305 1 3056 98 77 8 chrY 2680325 2680803 -48832781 - MER9 LTR ERVK 0 511 1 195 162 0 0 chrY 2681057 2681094 -48832490 + A-rich Low_complexity Low_complexity 1 37 0 213 139 0 0 chrY 2681121 2681164 -48832420 + (TAAAA)n Simple_repeat Simple_repeat 2 44 0 396 191 0 135 chrY 2681484 2681610 -48831974 + MIR SINE MIR 124 232 -30 1990 112 3 0 chrY 2681794 2682088 -48831496 - L1PA8 LINE L1 0 6172 5878 2061 148 119 10 chrY 2682376 2682762 -48830822 + MSTA LTR MaLR 1 428 0 1084 95 114 0 chrY 2683011 2683169 -48830415 - AluJb SINE Alu -4 308 133 23 0 0 0 chrY 2683814 2683837 -48829747 + AT_rich Low_complexity Low_complexity 1 23 0 1842 163 0 25 chrY 2685529 2685849 -48827735 - AluJb SINE Alu 0 312 1 225 132 0 0 chrY 2686507 2686545 -48827039 + (A)n Simple_repeat Simple_repeat 1 38 0 2450 55 6 10 chrY 2687994 2688306 -48825278 + AluY SINE Alu 1 311 0 1658 168 59 22 chrY 2688403 2688760 -48824824 + L1MC3 LINE L1 7396 7765 -20 1934 136 0 7 chrY 2688783 2689104 -48824480 - AluSq SINE Alu 0 319 1 1885 231 49 49 chrY 2689972 2690393 -48823191 - L1M4 LINE L1 -1815 5142 4722 291 28 0 0 chrY 2690393 2690429 -48823155 + (TG)n Simple_repeat Simple_repeat 2 37 0 1885 231 49 49 chrY 2690429 2690448 -48823136 - L1M4 LINE L1 -2235 4722 4704 2168 101 3 10 chrY 2690448 2690746 -48822838 + AluSq SINE Alu 1 296 -17 1885 231 49 49 chrY 2690746 2690897 -48822687 - L1M4 LINE L1 -2252 4705 4550 * 5138 130 5 0 chrY 2690889 2691668 -48821916 - L1PA15 LINE L1 -2 6814 6032 11354 209 14 9 chrY 2691673 2693366 -48820218 - L1PA15 LINE L1 -869 5928 4216 4680 77 24 24 chrY 2693366 2694026 -48819558 - PABL_A LTR ERV1 0 660 1 11354 209 14 9 chrY 2694026 2694900 -48818684 - L1PA15 LINE L1 -2581 4216 3348 286 24 0 0 chrY 2694903 2694944 -48818640 + L1MA3 LINE L1 6265 6305 0 1112 176 0 134 chrY 2694952 2695124 -48818460 - L1PA15 LINE L1 -5026 1761 1660 2141 110 13 3 chrY 2695124 2695424 -48818160 - AluSg SINE Alu -6 304 2 1112 176 0 134 chrY 2695424 2695610 -48817974 - L1PA15 LINE L1 -5127 1660 1451 * 2771 250 9 28 chrY 2695602 2696281 -48817303 - L1PA15 LINE L1 -5920 867 202 195 125 0 0 chrY 2696286 2696326 -48817258 + (T)n Simple_repeat Simple_repeat 1 40 0 957 217 22 18 chrY 2696326 2696552 -48817032 - L1M4 LINE L1 -2401 4556 4330 1652 311 50 19 chrY 2696553 2697168 -48816416 - L1M4 LINE L1 -6215 644 11 195 359 28 21 chrY 2697272 2697414 -48816170 - L2 LINE L2 -498 2816 2674 414 365 57 30 chrY 2697637 2698040 -48815544 - L2 LINE L2 -924 2390 1977 25 0 0 0 chrY 2698845 2698870 -48814714 + AT_rich Low_complexity Low_complexity 1 25 0 302 280 16 48 chrY 2699202 2699327 -48814257 - MIR3 SINE MIR -1 207 87 1190 201 43 114 chrY 2699898 2700292 -48813292 - MLT1B LTR MaLR -24 366 1 7442 226 55 31 chrY 2700598 2701290 -48812294 + L1MB3 LINE L1 2676 3350 -2833 2013 103 15 0 chrY 2701290 2701412 -48812172 + AluSg SINE Alu 3 122 -188 351 0 0 0 chrY 2701412 2701451 -48812133 + (CA)n Simple_repeat Simple_repeat 2 40 0 2013 103 15 0 chrY 2701451 2701599 -48811985 + AluSg SINE Alu 122 277 -33 7442 226 55 31 chrY 2701599 2704335 -48809249 + L1MB3 LINE L1 3350 6183 0 1809 114 78 0 chrY 2705062 2705333 -48808251 - AluSq SINE Alu -15 298 7 183 269 0 77 chrY 2707718 2707796 -48805788 - L3 LINE CR1 -1328 249 178 * 345 276 219 10 chrY 2707795 2707991 -48805593 - MIR SINE MIR -6 256 20 3484 149 51 39 chrY 2708166 2709261 -48804323 - Tigger3b DNA MER2_type 0 1232 1 1619 203 3 0 chrY 2710037 2710332 -48803252 - AluJb SINE Alu -16 296 1 243 285 89 49 chrY 2710580 2710703 -48802881 - L2 LINE L2 -9 3263 3136 21 57 0 0 chrY 2710703 2710738 -48802846 + AT_rich Low_complexity Low_complexity 1 35 0 510 331 73 8 chrY 2712190 2712435 -48801149 + MIR SINE MIR 2 262 0 204 182 0 0 chrY 2712437 2712481 -48801103 + (TAG)n Simple_repeat Simple_repeat 1 44 0 21 0 0 0 chrY 2713807 2713828 -48799756 + AT_rich Low_complexity Low_complexity 1 21 0 828 152 8 0 chrY 2714023 2714148 -48799436 - FLAM_C SINE Alu -17 126 1 360 271 45 45 chrY 2714148 2714281 -48799303 + MIR SINE MIR 116 248 -14 24 32 0 0 chrY 2714307 2714338 -48799246 + AT_rich Low_complexity Low_complexity 1 31 0 312 27 0 0 chrY 2714883 2714920 -48798664 + (TC)n Simple_repeat Simple_repeat 2 38 0 5154 141 25 20 chrY 2715143 2715672 -48797912 - MER49 LTR ERV1 -2 921 383 2574 39 0 10 chrY 2715672 2715978 -48797606 - AluY SINE Alu -8 303 1 5154 141 25 20 chrY 2715978 2716364 -48797220 - MER49 LTR ERV1 -540 383 1 235 304 69 0 chrY 2716830 2716932 -48796652 - MIR SINE MIR -52 210 102 21 0 0 0 chrY 2718032 2718053 -48795531 + AT_rich Low_complexity Low_complexity 1 21 0 832 20 0 0 chrY 2718053 2718151 -48795433 - L1PA3 LINE L1 -3 6152 6055 2668 142 50 0 chrY 2719163 2719601 -48793983 - L1PA15 LINE L1 -13 6152 5693 640 166 106 46 chrY 2720498 2720649 -48792935 - MLT1G LTR MaLR -13 554 395 761 199 79 168 chrY 2720695 2721023 -48792561 - MLT1G LTR MaLR -295 300 3 198 0 0 0 chrY 2721100 2721122 -48792462 + (TA)n Simple_repeat Simple_repeat 1 22 0 * 384 22 0 0 chrY 2721121 2721166 -48792418 + (GA)n Simple_repeat Simple_repeat 2 46 0 758 329 19 25 chrY 2722482 2722801 -48790783 + L1ME2 LINE L1 35 351 -6045 * 3381 257 36 14 chrY 2722798 2723888 -48789696 + L1ME2 LINE L1 3056 4169 -2046 4814 117 8 1 chrY 2723888 2724630 -48788954 + L1MA3 LINE L1 5559 6305 0 2702 246 52 31 chrY 2724646 2725598 -48787986 + L1ME2 LINE L1 5260 6232 -1 670 191 6 6 chrY 2725755 2725912 -48787672 + CT-rich Low_complexity Low_complexity 3 159 0 217 240 0 40 chrY 2726887 2726937 -48786647 + (CGTG)n Simple_repeat Simple_repeat 4 51 0 339 25 0 0 chrY 2727230 2727270 -48786314 + (CAG)n Simple_repeat Simple_repeat 1 40 0 523 282 23 0 chrY 2727273 2727404 -48786180 + MER5A DNA MER1_type 50 183 -6 389 353 5 33 chrY 2727600 2727784 -48785800 + MIR SINE MIR 41 219 -43 4173 161 23 1 chrY 2728480 2729206 -48784378 + Tigger2 DNA MER2_type 3 744 -1974 1605 134 16 0 chrY 2729273 2729526 -48784058 + Tigger2 DNA MER2_type 2462 2718 0 23 0 0 0 chrY 2731033 2731056 -48782528 + AT_rich Low_complexity Low_complexity 1 23 0 300 281 149 16 chrY 2731941 2732062 -48781522 - L2 LINE L2 -2 3270 3134 2053 220 0 0 chrY 2733406 2733875 -48779709 + L1 LINE L1 4652 5120 -1026 2720 128 31 0 chrY 2733876 2734291 -48779293 - MSTA LTR MaLR 0 428 1 7912 192 46 3 chrY 2734291 2735870 -48777714 - MSTA-int LTR MaLR 0 1651 6 2614 142 31 0 chrY 2735883 2736298 -48777286 - MSTA LTR MaLR 0 428 1 5117 156 14 19 chrY 2736302 2737353 -48776231 + L1PA16 LINE L1 5120 6165 -1 23 33 0 0 chrY 2738758 2738788 -48774796 + AT_rich Low_complexity Low_complexity 1 30 0 185 370 41 0 chrY 2738863 2738936 -48774648 - MIR SINE MIR -114 94 19 28 0 0 0 chrY 2741606 2741634 -48771950 + AT_rich Low_complexity Low_complexity 1 28 0 241 260 13 26 chrY 2742813 2742890 -48770694 - MIR SINE MIR -183 79 4 2027 122 3 3 chrY 2742983 2743299 -48770285 - AluSq SINE Alu 0 316 1 729 252 35 53 chrY 2743867 2744088 -48769496 + L2 LINE L2 2633 2849 -465 2082 146 5 45 chrY 2744088 2744466 -48769118 + MER47A DNA MER2_type 4 366 0 729 252 35 53 chrY 2744466 2744526 -48769058 + L2 LINE L2 2849 2909 -405 2909 164 45 7 chrY 2744534 2745250 -48768334 - L1PBa LINE L1 -4921 1942 1 407 335 73 28 chrY 2746651 2746830 -48766754 - MIR3 SINE MIR -7 201 15 343 250 56 19 chrY 2747087 2747195 -48766389 - MARNA DNA Mariner -355 231 120 1964 178 19 3 chrY 2749287 2749646 -48763938 + MLT1A1 LTR MaLR 1 365 0 313 277 119 64 chrY 2749947 2750149 -48763435 - L2 LINE L2 -903 2411 2199 206 224 20 0 chrY 2750184 2750233 -48763351 - L2 LINE L2 0 3313 3264 211 233 33 17 chrY 2752584 2752644 -48760940 - L2 LINE L2 -3 3310 3250 187 316 74 51 chrY 2753096 2753311 -48760273 + L2 LINE L2 1587 1806 -1508 5810 220 34 27 chrY 2753529 2756042 -48757542 - L1MB3 LINE L1 -9 6568 4027 6115 126 27 35 chrY 2756042 2756636 -48756948 - Tigger3b DNA MER2_type -1798 1230 646 759 162 75 64 chrY 2756636 2756809 -48756775 + FAM SINE Alu 1 175 0 6115 126 27 35 chrY 2756809 2757280 -48756304 - Tigger3b DNA MER2_type -2382 646 173 738 168 0 0 chrY 2757315 2757434 -48756150 - FLAM_C SINE Alu -24 119 1 518 158 37 0 chrY 2757434 2757516 -48756068 - Tigger3b DNA MER2_type -1050 181 97 19838 146 12 89 chrY 2757519 2761860 -48751724 - L1P LINE L1 -2140 4006 2 1950 248 43 63 chrY 2761854 2762352 -48751232 - L1MB3 LINE L1 -3053 3487 3010 * 2373 91 3 0 chrY 2762352 2762659 -48750925 - AluSg SINE Alu -2 308 1 1950 248 43 63 chrY 2762659 2763167 -48750417 - L1MB3 LINE L1 -3530 3010 2494 531 277 87 31 chrY 2763474 2763669 -48749915 - L2 LINE L2 -5 3308 3103 25 75 0 0 chrY 2763859 2763912 -48749672 + AT_rich Low_complexity Low_complexity 1 53 0 205 250 0 0 chrY 2764466 2764518 -48749066 + (CAG)n Simple_repeat Simple_repeat 1 52 0 2844 177 23 8 chrY 2764949 2765480 -48748104 - MER34 LTR ERV1 -3 539 1 24 0 0 0 chrY 2765976 2766000 -48747584 + AT_rich Low_complexity Low_complexity 1 24 0 21 0 0 0 chrY 2766965 2766986 -48746598 + AT_rich Low_complexity Low_complexity 1 21 0 636 50 0 0 chrY 2767035 2767115 -48746469 + (TA)n Simple_repeat Simple_repeat 2 81 0 2290 87 0 10 chrY 2767115 2767414 -48746170 - AluY SINE Alu -15 296 1 2318 94 0 0 chrY 2767550 2767859 -48745725 - AluSg1 SINE Alu 0 309 1 180 0 0 0 chrY 2768677 2768697 -48744887 + (TAAA)n Simple_repeat Simple_repeat 2 21 0 27 0 0 0 chrY 2769810 2769837 -48743747 + AT_rich Low_complexity Low_complexity 1 27 0 2112 165 8 14 chrY 2770475 2770832 -48742752 - MLT1A1 LTR MaLR 0 365 11 5287 187 164 47 chrY 2770927 2772428 -48741156 + MER52A LTR ERV1 1 1755 0 206 136 23 0 chrY 2772843 2772887 -48740697 + (TG)n Simple_repeat Simple_repeat 1 45 0 442 283 128 21 chrY 2773958 2774145 -48739439 + L3 LINE CR1 1133 1339 -238 327 25 0 0 chrY 2774888 2774928 -48738656 + (CA)n Simple_repeat Simple_repeat 1 40 0 2341 103 0 0 chrY 2775129 2775439 -48738145 + AluSg SINE Alu 1 310 0 1122 215 4 21 chrY 2776692 2776934 -48736650 + MER58B DNA MER1_type 103 340 -1 7102 54 9 0 chrY 2777011 2777985 -48735599 - L1PA7 LINE L1 0 6154 5176 5131 82 10 1 chrY 2778078 2778763 -48734821 - LTR8 LTR ERV1 0 691 1 1589 164 52 4 chrY 2779237 2779539 -48734045 + AluJb SINE Alu 1 315 0 769 294 44 63 chrY 2780114 2780543 -48733041 - MLT1G LTR MaLR 0 590 170 21 36 0 0 chrY 2780749 2780777 -48732807 + AT_rich Low_complexity Low_complexity 1 28 0 29 70 0 0 chrY 2781942 2781999 -48731585 + AT_rich Low_complexity Low_complexity 1 57 0 273 29 0 0 chrY 2784048 2784082 -48729502 + (TG)n Simple_repeat Simple_repeat 2 35 0 21 0 0 0 chrY 2784718 2784739 -48728845 + AT_rich Low_complexity Low_complexity 1 21 0 22 80 0 0 chrY 2785941 2785991 -48727593 + AT_rich Low_complexity Low_complexity 1 50 0 26 50 0 0 chrY 2787245 2787285 -48726299 + AT_rich Low_complexity Low_complexity 1 40 0 22 35 0 0 chrY 2788452 2788481 -48725103 + AT_rich Low_complexity Low_complexity 1 29 0 391 256 58 29 chrY 2789126 2789271 -48724313 + MIR3 SINE MIR 55 188 -27 307 278 0 0 chrY 2789317 2789389 -48724195 - MIR3 SINE MIR -17 191 120 2122 109 10 13 chrY 2790231 2790535 -48723049 + AluSx SINE Alu 1 303 -9 472 60 24 119 chrY 2791141 2791225 -48722359 - AluSg/x SINE Alu -20 290 215 587 295 36 6 chrY 2792347 2792513 -48721071 + MIR SINE MIR 34 204 -58 2373 67 0 3 chrY 2792558 2792856 -48720728 + AluY SINE Alu 1 297 -14 355 226 32 32 chrY 2792937 2793030 -48720554 - MER5A DNA MER1_type -88 101 9 2279 60 0 11 chrY 2793383 2793695 -48719889 - AluY SINE Alu 0 309 1 3474 184 26 4 chrY 2795787 2796490 -48717094 + L1P LINE L1 4492 5209 -937 291 28 0 0 chrY 2796982 2797018 -48716566 + (TTTG)n Simple_repeat Simple_repeat 2 37 0 330 316 33 13 chrY 2798730 2798882 -48714702 + MIR SINE MIR 84 238 -24 2554 47 0 0 chrY 2799471 2799770 -48713814 + AluY SINE Alu 1 299 -12 461 267 87 65 chrY 2799817 2800155 -48713429 - L1MC4a LINE L1 -171 5950 5603 1990 118 13 25 chrY 2800294 2800608 -48712976 + AluSq SINE Alu 1 310 -3 353 303 106 24 chrY 2800744 2801041 -48712543 - L1ME3A LINE L1 -245 5925 5605 348 279 118 38 chrY 2801053 2801376 -48712208 - L1ME3A LINE L1 -748 5398 5189 350 333 12 0 chrY 2801393 2801511 -48712073 - L1MC4a LINE L1 -532 5589 5483 2232 103 3 0 chrY 2801527 2801828 -48711756 - AluSg SINE Alu -3 307 6 2328 86 0 13 chrY 2802220 2802535 -48711049 - AluY SINE Alu 0 311 1 24 0 0 0 chrY 2804344 2804368 -48709216 + AT_rich Low_complexity Low_complexity 1 24 0 3299 70 13 15 chrY 2804927 2805385 -48708199 - L1PA8 LINE L1 -13 6159 5703 480 214 0 22 chrY 2805535 2805717 -48707867 + GA-rich Low_complexity Low_complexity 3 180 0 225 0 0 0 chrY 2806307 2806332 -48707252 + (TG)n Simple_repeat Simple_repeat 2 26 0 982 75 14 0 chrY 2806581 2806728 -48706856 - L1PBa LINE L1 -6692 171 23 432 159 11 119 chrY 2806743 2806919 -48706665 - L1MCa LINE L1 -5226 1200 1044 3872 184 17 17 chrY 2807109 2807831 -48705753 - MER72 LTR ERV1 0 722 1 350 320 40 0 chrY 2807962 2808087 -48705497 - MIR SINE MIR -72 190 61 22 106 0 0 chrY 2809389 2809474 -48704110 + AT_rich Low_complexity Low_complexity 1 85 0 186 143 0 0 chrY 2809577 2809612 -48703972 + (TG)n Simple_repeat Simple_repeat 2 36 0 2116 105 29 9 chrY 2809650 2809993 -48703591 + L1MA1 LINE L1 5953 6302 0 749 215 6 0 chrY 2810100 2810277 -48703307 + L1MA4 LINE L1 6121 6298 -2 198 171 0 0 chrY 2811317 2811358 -48702226 + T-rich Low_complexity Low_complexity 1 41 0 225 222 28 0 chrY 2812045 2812117 -48701467 - L1MDa LINE L1 -2930 3610 3537 839 210 6 12 chrY 2812117 2812279 -48701305 - FRAM SINE Alu -19 157 1 473 236 149 8 chrY 2812282 2812523 -48701061 - L1MDa LINE L1 -3007 3533 3259 * 803 215 37 12 chrY 2812516 2812762 -48700822 - L1MDa LINE L1 -3623 2917 2666 225 108 0 0 chrY 2812774 2812811 -48700773 + (T)n Simple_repeat Simple_repeat 1 37 0 704 213 8 0 chrY 2812814 2812941 -48700643 - FLAM_A SINE Alu -5 128 1 1502 245 80 95 chrY 2813040 2813194 -48700390 - L1MDa LINE L1 -3936 2604 2449 2387 73 3 0 chrY 2813194 2813495 -48700089 - AluY SINE Alu -9 302 1 1502 245 80 95 chrY 2813495 2814592 -48698992 - L1MDa LINE L1 -4091 2449 1372 705 120 128 0 chrY 2814636 2814761 -48698823 - L1PA15 LINE L1 -2 6163 6023 3343 166 92 6 chrY 2814761 2815413 -48698171 - L1PA8A LINE L1 -170 5961 5254 233 213 40 0 chrY 2815420 2815495 -48698089 - L1MDa LINE L1 -5185 1355 1278 192 77 0 0 chrY 2815579 2815605 -48697979 + (T)n Simple_repeat Simple_repeat 1 26 0 5858 153 18 14 chrY 2815608 2816261 -48697323 - L1PB1 LINE L1 -3 6148 5499 199 70 23 23 chrY 2816261 2816304 -48697280 + (TTTA)n Simple_repeat Simple_repeat 2 44 0 2271 70 0 7 chrY 2816304 2816590 -48696994 - AluY SINE Alu -27 284 1 5858 153 18 14 chrY 2816590 2817597 -48695987 - L1PB1 LINE L1 -651 5500 4472 255 281 23 31 chrY 2818156 2818284 -48695300 - L1MDa LINE L1 -5882 648 522 559 302 132 5 chrY 2818331 2818543 -48695041 - LTR50 LTR ERVL -271 524 286 2332 290 43 44 chrY 2818584 2819522 -48694062 - L2 LINE L2 -569 2745 1809 257 400 17 0 chrY 2820242 2820357 -48693227 - MIR3 SINE MIR -31 177 61 293 274 0 14 chrY 2820447 2820520 -48693064 + CT-rich Low_complexity Low_complexity 2 73 0 305 377 7 7 chrY 2820899 2821037 -48692547 + MIR SINE MIR 40 177 -85 657 0 0 0 chrY 2822052 2822125 -48691459 + (TTTC)n Simple_repeat Simple_repeat 4 76 0 21 36 0 0 chrY 2825840 2825868 -48687716 + AT_rich Low_complexity Low_complexity 1 28 0 28 48 0 0 chrY 2826361 2826403 -48687181 + AT_rich Low_complexity Low_complexity 1 42 0 214 213 16 16 chrY 2827202 2827263 -48686321 + MIR SINE MIR 165 225 -37 378 74 0 0 chrY 2827610 2827664 -48685920 + (TCTA)n Simple_repeat Simple_repeat 1 54 0 655 212 0 15 chrY 2828041 2828173 -48685411 - FRAM SINE Alu -15 161 32 880 118 0 8 chrY 2828211 2828338 -48685246 - THE1B LTR MaLR 0 364 239 3367 174 77 7 chrY 2828338 2829491 -48684093 + L1PA12 LINE L1 2393 3631 -3953 5714 123 14 3 chrY 2829491 2830480 -48683104 + L1PA14 LINE L1 5161 6161 0 1111 86 0 25 chrY 2830482 2830644 -48682940 + L1MA2 LINE L1 6143 6300 -4 1060 228 58 85 chrY 2831902 2832435 -48681149 + MER39 LTR ERV1 1 682 -25 265 261 15 0 chrY 2833202 2833267 -48680317 + CT-rich Low_complexity Low_complexity 2 67 0 7981 189 13 66 chrY 2833665 2833902 -48679682 - L1PA16 LINE L1 -4 6162 5914 2132 117 51 17 chrY 2833902 2834254 -48679330 + THE1B LTR MaLR 1 364 0 11001 107 13 5 chrY 2834254 2835822 -48677762 + THE1B-int LTR MaLR 1 1580 0 1869 151 98 21 chrY 2835822 2836160 -48677424 + THE1B LTR MaLR 1 364 0 7981 189 13 66 chrY 2836160 2838931 -48674653 - L1PA16 LINE L1 -249 5917 3319 234 328 132 35 chrY 2839072 2839383 -48674201 + L3b LINE CR1 1129 1469 -114 2203 130 14 27 chrY 2839850 2840219 -48673365 + THE1B LTR MaLR 1 364 0 10749 117 12 0 chrY 2840219 2841780 -48671804 + THE1B-int LTR MaLR 1 1580 0 2123 149 5 35 chrY 2841780 2842155 -48671429 + THE1B LTR MaLR 1 364 0 2854 16 0 0 chrY 2842844 2843161 -48670423 + AluYb8 SINE Alu 1 317 -1 282 263 50 10 chrY 2843372 2843471 -48670113 - MIR SINE MIR -117 145 43 439 275 215 25 chrY 2843552 2843752 -48669832 + MIR SINE MIR 2 239 -23 219 281 99 25 chrY 2845201 2845322 -48668262 - MER5B DNA MER1_type -48 130 1 189 0 0 0 chrY 2846287 2846308 -48667276 + (TG)n Simple_repeat Simple_repeat 2 22 0 * 284 0 28 0 chrY 2846307 2846343 -48667241 + (TA)n Simple_repeat Simple_repeat 2 38 0 2213 92 0 3 chrY 2846344 2846636 -48666948 - AluSc SINE Alu -17 292 2 26 0 0 0 chrY 2846639 2846665 -48666919 + AT_rich Low_complexity Low_complexity 1 26 0 27 0 0 0 chrY 2847486 2847513 -48666071 + AT_rich Low_complexity Low_complexity 1 27 0 367 189 26 7 chrY 2848008 2848161 -48665423 + (TA)n Simple_repeat Simple_repeat 1 156 0 227 316 41 20 chrY 2848178 2848276 -48665308 + L2 LINE L2 3170 3269 -3 806 181 13 13 chrY 2849262 2849417 -48664167 - FRAM SINE Alu -16 160 6 21 0 0 0 chrY 2850366 2850387 -48663197 + AT_rich Low_complexity Low_complexity 1 21 0 33 25 0 0 chrY 2850873 2850913 -48662671 + AT_rich Low_complexity Low_complexity 1 40 0 28 71 0 0 chrY 2851439 2851495 -48662089 + AT_rich Low_complexity Low_complexity 1 56 0 4848 161 9 9 chrY 2852070 2852962 -48660622 - L1MA3 LINE L1 0 7724 6833 2128 199 37 25 chrY 2852965 2853452 -48660132 + L1 LINE L1 3964 4456 -1690 4856 167 23 3 chrY 2854860 2855778 -48657806 + L1 LINE L1 4441 5376 -770 391 309 36 30 chrY 2857342 2857507 -48656077 + MIR3 SINE MIR 43 208 0 2556 126 3 0 chrY 2858086 2858458 -48655126 + THE1C LTR MaLR 3 375 0 636 204 84 14 chrY 2858864 2859006 -48654578 + FRAM SINE Alu 10 161 -15 23 33 0 0 chrY 2859852 2859882 -48653702 + AT_rich Low_complexity Low_complexity 1 30 0 14934 184 23 35 chrY 2863241 2864950 -48648634 - L1MA3 LINE L1 -996 6569 4841 5845 113 17 35 chrY 2864950 2866943 -48646641 - L1PA13 LINE L1 0 6814 4836 14934 184 23 35 chrY 2866943 2869491 -48644093 - L1MA3 LINE L1 -2724 4841 2399 2334 130 17 8 chrY 2869491 2869852 -48643732 + THE1B LTR MaLR 1 364 0 14934 184 23 35 chrY 2869852 2871304 -48642280 - L1MA3 LINE L1 -5166 2399 931 12273 214 28 10 chrY 2871303 2871424 -48642160 - L1PA13 LINE L1 -2793 4004 3887 * 1628 159 49 85 chrY 2871424 2871813 -48641771 + THE1C LTR MaLR 1 375 0 12273 214 28 10 chrY 2871813 2874815 -48638769 - L1PA13 LINE L1 -2910 3887 773 259 44 44 0 chrY 2874815 2874860 -48638724 + (CA)n Simple_repeat Simple_repeat 1 47 0 12273 214 28 10 chrY 2874860 2875648 -48637936 - L1PA13 LINE L1 -6024 773 1 189 313 30 0 chrY 2875657 2875724 -48637860 + MIR SINE MIR 98 166 -96 23 54 0 0 chrY 2877249 2877286 -48636298 + AT_rich Low_complexity Low_complexity 1 37 0 1245 117 3 9 chrY 2877424 2877622 -48635962 + L1P5 LINE L1 5595 5791 -360 250 201 24 0 chrY 2877627 2877724 -48635860 + L1MC4 LINE L1 1995 6983 -1339 236 152 121 0 chrY 2877723 2877789 -48635795 + L1MC4 LINE L1 6920 6993 -1329 * 1238 141 0 0 chrY 2877780 2877972 -48635612 - L1P5 LINE L1 -523 5628 5437 2523 80 0 0 chrY 2877977 2878304 -48635280 + L1PB1 LINE L1 5782 6108 -43 23 0 0 0 chrY 2879732 2879755 -48633829 + AT_rich Low_complexity Low_complexity 1 23 0 1624 123 0 0 chrY 2880497 2880725 -48632859 - AluSg/x SINE Alu -4 306 79 208 267 33 0 chrY 2881031 2881091 -48632493 - L2 LINE L2 -4 3268 3207 822 152 30 0 chrY 2881423 2881555 -48632029 - FRAM SINE Alu -39 137 2 532 273 0 0 chrY 2881756 2881877 -48631707 + L2 LINE L2 3189 3309 -4 25 0 0 0 chrY 2882020 2882045 -48631539 + AT_rich Low_complexity Low_complexity 1 25 0 303 169 0 0 chrY 2883211 2883282 -48630302 + (TA)n Simple_repeat Simple_repeat 2 72 0 215 211 35 0 chrY 2883384 2883441 -48630143 + (TAA)n Simple_repeat Simple_repeat 3 61 0 1125 56 19 6 chrY 2884171 2884333 -48629251 + (GAAA)n Simple_repeat Simple_repeat 3 166 0 183 80 0 0 chrY 2884335 2884360 -48629224 + (CAAG)n Simple_repeat Simple_repeat 2 26 0 2071 211 15 19 chrY 2884968 2885321 -48628263 - L1MA9 LINE L1 -38 6274 5922 260 312 38 19 chrY 2885321 2885478 -48628106 - L1ME3A LINE L1 -244 5926 5767 31 0 0 0 chrY 2886502 2886533 -48627051 + AT_rich Low_complexity Low_complexity 1 31 0 42805 30 21 1 chrY 2886533 2892564 -48621020 - L1HS LINE L1 0 6155 1 686 127 59 0 chrY 2892859 2892977 -48620607 + L1MB1 LINE L1 6042 6166 -2 2191 107 3 3 chrY 2893232 2893530 -48620054 - AluSx SINE Alu -14 298 1 254 321 22 35 chrY 2894530 2894643 -48618941 - MIR SINE MIR -74 134 20 261 285 83 56 chrY 2895092 2895191 -48618393 - L1MA10 LINE L1 -4 6330 6224 2289 124 8 8 chrY 2895191 2895546 -48618038 - THE1A LTR MaLR 0 355 1 261 285 83 56 chrY 2895546 2895590 -48617994 - L1MA10 LINE L1 -110 6224 6183 824 202 54 34 chrY 2896559 2896944 -48616640 - MER31B LTR ERV1 0 466 3 376 257 143 0 chrY 2897008 2897113 -48616471 + L2 LINE L2 3145 3264 -8 31 26 0 0 chrY 2898477 2898515 -48615069 + AT_rich Low_complexity Low_complexity 1 38 0 1524 204 0 26 chrY 2899083 2899387 -48614197 + AluJb SINE Alu 3 298 -14 469 195 0 0 chrY 2899387 2899429 -48614155 + FLAM_C SINE Alu 3 348 0 13564 161 31 6 chrY 2900111 2902430 -48611154 + L1PA11 LINE L1 2820 5230 -944 279 0 0 0 chrY 2902430 2902461 -48611123 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 13564 161 31 6 chrY 2902461 2903426 -48610158 + L1PA11 LINE L1 5230 6169 -5 8320 190 30 68 chrY 2903664 2906994 -48606590 - L1PA15 LINE L1 -13 6152 2928 2030 117 7 10 chrY 2907366 2907657 -48605927 - AluSx SINE Alu -20 292 3 394 176 0 0 chrY 2907664 2907738 -48605846 + Tigger7 DNA MER2_type 2457 2530 -57 1885 126 61 0 chrY 2907754 2908048 -48605536 - AluSq SINE Alu -1 312 1 23 78 0 0 chrY 2908154 2908205 -48605379 + AT_rich Low_complexity Low_complexity 1 51 0 23 54 0 0 chrY 2908321 2908358 -48605226 + AT_rich Low_complexity Low_complexity 1 37 0 796 284 66 8 chrY 2912305 2912548 -48601036 + MIR SINE MIR 2 258 -4 2546 191 111 15 chrY 2913270 2913863 -48599721 - L1MB8 LINE L1 -1 6177 5528 2126 93 0 3 chrY 2913989 2914278 -48599306 + AluSx SINE Alu 11 298 -14 2549 55 0 0 chrY 2914297 2914607 -48598977 + AluY SINE Alu 1 310 -1 306 0 0 0 chrY 2915151 2915185 -48598399 + (TG)n Simple_repeat Simple_repeat 1 34 0 2241 74 0 3 chrY 2918286 2918593 -48594991 - AluY SINE Alu 0 334 29 365 275 150 31 chrY 2918601 2918761 -48594823 + MIR SINE MIR 53 231 -31 240 301 41 0 chrY 2918756 2918829 -48594755 - MIR SINE MIR -127 135 60 * 13304 137 22 62 chrY 2919708 2922226 -48591358 - Tigger1 DNA MER2_type -1 2417 1 248 305 75 70 chrY 2922237 2922450 -48591134 - MIR SINE MIR -15 247 34 22 0 0 0 chrY 2922894 2922916 -48590668 + AT_rich Low_complexity Low_complexity 1 22 0 186 344 75 25 chrY 2923253 2923413 -48590171 - L3b LINE CR1 -105 1478 1311 2270 109 0 0 chrY 2924918 2925221 -48588363 + AluSq SINE Alu 3 305 -8 6734 125 6 1 chrY 2925928 2927009 -48586575 + L1MA1 LINE L1 5216 6301 -1 2253 97 3 7 chrY 2927862 2928172 -48585412 - AluSp SINE Alu -4 309 1 2015 153 22 27 chrY 2932293 2932659 -48580925 - THE1B LTR MaLR 0 364 1 456 337 55 10 chrY 2932947 2933149 -48580435 - L2 LINE L2 -252 3061 2851 185 304 0 0 chrY 2933229 2933285 -48580299 - L2 LINE L2 -152 3161 3106 8618 76 2 28 chrY 2933285 2934525 -48579059 + L1P LINE L1 830 2036 -4110 4428 133 21 0 chrY 2934525 2935233 -48578351 + L1PA13 LINE L1 5422 6144 -19 2129 169 5 36 chrY 2935610 2936029 -48577555 - L1PA13 LINE L1 -4641 2146 1741 1072 166 0 24 chrY 2936028 2936239 -48577345 - L1M1 LINE L1 -632 7092 6887 * 1419 149 5 0 chrY 2936241 2936462 -48577122 - AluJb SINE Alu -6 306 85 1235 206 5 12 chrY 2936462 2936892 -48576692 - L1M1 LINE L1 -745 6820 6472 2244 181 17 15 chrY 2936893 2937364 -48576220 + L1 LINE L1 4430 4901 -1245 1076 181 5 9 chrY 2937363 2937578 -48576006 - L1M1 LINE L1 -1777 5788 5575 * 3978 188 35 6 chrY 2937590 2941223 -48572361 - L1M1 LINE L1 -3641 3924 11 1631 96 32 0 chrY 2941328 2941548 -48572036 + AluSg/x SINE Alu 71 297 -13 21 0 0 0 chrY 2941661 2941682 -48571902 + AT_rich Low_complexity Low_complexity 1 21 0 1092 113 12 0 chrY 2943204 2943364 -48570220 + AluSg/x SINE Alu 130 291 -19 1975 138 3 0 chrY 2944961 2945266 -48568318 - AluSx SINE Alu -6 306 1 333 363 32 8 chrY 2945706 2945830 -48567754 - MIR3 SINE MIR -30 178 52 237 222 0 0 chrY 2947067 2947130 -48566454 + CT-rich Low_complexity Low_complexity 2 64 0 904 182 0 0 chrY 2947301 2947471 -48566113 - AluSg/x SINE Alu 0 312 143 180 0 0 0 chrY 2947473 2947493 -48566091 + (TA)n Simple_repeat Simple_repeat 1 20 0 1646 177 13 3 chrY 2947759 2948059 -48565525 - AluJb SINE Alu -9 303 1 29 28 0 0 chrY 2948423 2948459 -48565125 + AT_rich Low_complexity Low_complexity 1 36 0 219 175 25 0 chrY 2948772 2948812 -48564772 + (CATATA)n Simple_repeat Simple_repeat 5 45 0 2447 159 20 0 chrY 2949402 2949843 -48563741 - L1MA5 LINE L1 -6 6294 5845 10311 175 30 7 chrY 2950029 2952578 -48561006 - L1MA2 LINE L1 0 7723 5076 180 0 0 0 chrY 2952578 2952598 -48560986 + (TG)n Simple_repeat Simple_repeat 2 21 0 10311 175 30 7 chrY 2952598 2953337 -48560247 - L1MA2 LINE L1 -2647 5076 4356 235 182 0 0 chrY 2953336 2953380 -48560204 - L1MA2 LINE L1 -7508 57 14 * 34 24 0 0 chrY 2953945 2953986 -48559598 + AT_rich Low_complexity Low_complexity 1 41 0 25 31 0 0 chrY 2954168 2954200 -48559384 + AT_rich Low_complexity Low_complexity 1 32 0 180 361 74 8 chrY 2954564 2954686 -48558898 + L2 LINE L2 3181 3310 -3 341 324 9 9 chrY 2954688 2954796 -48558788 - MIR3 SINE MIR -16 192 85 2189 157 22 3 chrY 2955395 2955758 -48557826 - THE1C LTR MaLR 0 375 6 8846 146 34 46 chrY 2955763 2957362 -48556222 - THE1C-int LTR MaLR 0 1580 1 2163 163 22 3 chrY 2957362 2957730 -48555854 - THE1C LTR MaLR 0 375 1 21 36 0 0 chrY 2958517 2958545 -48555039 + AT_rich Low_complexity Low_complexity 1 28 0 23 0 0 0 chrY 2958565 2958588 -48554996 + AT_rich Low_complexity Low_complexity 1 23 0 12557 201 84 5 chrY 2958919 2959005 -48554579 + L1MA2 LINE L1 11 89 -7476 180 0 0 0 chrY 2959005 2959025 -48554559 + (CA)n Simple_repeat Simple_repeat 2 21 0 12557 201 84 5 chrY 2959025 2961497 -48552087 + L1MA2 LINE L1 89 2772 -4793 2531 179 5 0 chrY 2961497 2961905 -48551679 - MSTA LTR MaLR 0 428 19 782 157 0 8 chrY 2961914 2962048 -48551536 - MSTA-int LTR MaLR 0 1651 1519 * 3269 164 2 2 chrY 2962045 2962601 -48550983 - MSTA-int LTR MaLR -1088 563 8 351 0 0 0 chrY 2962604 2962643 -48550941 + (T)n Simple_repeat Simple_repeat 1 39 0 2223 188 5 5 chrY 2962645 2963043 -48550541 - MSTA LTR MaLR -30 398 1 2467 130 20 0 chrY 2963043 2963450 -48550134 + L1MA2 LINE L1 2768 3182 -4383 6144 168 10 10 chrY 2963454 2965499 -48548085 + L1MA2 LINE L1 5677 7723 0 22 35 0 0 chrY 2965808 2965837 -48547747 + AT_rich Low_complexity Low_complexity 1 29 0 5087 133 6 4 chrY 2966503 2967313 -48546271 - L1P LINE L1 -1322 4824 4013 1914 88 4 0 chrY 2967313 2967571 -48546013 + L1PA11 LINE L1 5912 6173 -1 2346 66 3 7 chrY 2967686 2967987 -48545597 + AluY SINE Alu 1 300 -11 21 0 0 0 chrY 2968638 2968659 -48544925 + AT_rich Low_complexity Low_complexity 1 21 0 385 262 49 71 chrY 2968689 2968872 -48544712 + MIR SINE MIR 13 191 -71 375 167 78 0 chrY 2969134 2969224 -48544360 - L1ME4a LINE L1 -237 5884 5788 2374 92 0 0 chrY 2969282 2969585 -48543999 + AluSg SINE Alu 1 303 -7 47 67 0 0 chrY 2970889 2970978 -48542606 + AT_rich Low_complexity Low_complexity 1 89 0 2072 127 0 0 chrY 2972148 2972453 -48541131 + AluSx SINE Alu 1 305 0 297 291 149 0 chrY 2972677 2972811 -48540773 + MIR3 SINE MIR 32 185 -23 42 86 0 0 chrY 2974887 2974992 -48538592 + AT_rich Low_complexity Low_complexity 1 105 0 297 0 0 0 chrY 2975441 2975474 -48538110 + (CA)n Simple_repeat Simple_repeat 2 34 0 3293 188 23 26 chrY 2975488 2976463 -48537121 - L1 LINE L1 -3663 3902 2934 12585 217 26 40 chrY 2976473 2977583 -48536001 - L1PA12 LINE L1 -2491 5093 3970 1718 71 0 0 chrY 2977583 2977807 -48535777 + L1PA7 LINE L1 5931 6154 0 12585 217 26 40 chrY 2977807 2980512 -48533072 - L1M4 LINE L1 -3614 3970 1 2218 268 47 30 chrY 2980512 2980717 -48532867 + L1M4 LINE L1 3971 4171 -3413 2105 144 33 25 chrY 2980717 2981078 -48532506 + THE1B LTR MaLR 1 364 0 10882 118 13 9 chrY 2981078 2982533 -48531051 + THE1B-int LTR MaLR 1 1464 -116 2235 105 0 3 chrY 2982533 2982829 -48530755 - AluSx SINE Alu -17 295 1 10882 118 13 9 chrY 2982829 2982947 -48530637 + THE1B-int LTR MaLR 1464 1580 0 1951 144 42 33 chrY 2982948 2983308 -48530276 + THE1B LTR MaLR 2 364 0 2218 268 47 30 chrY 2983308 2984200 -48529384 + L1M4 LINE L1 4170 5090 -2494 1485 136 9 0 chrY 2984200 2984421 -48529163 - AluSp SINE Alu 0 313 91 1686 176 84 6 chrY 2984422 2984745 -48528839 - MSTA LTR MaLR -80 348 1 2560 55 3 0 chrY 2984785 2985093 -48528491 - AluY SINE Alu -2 309 1 30 0 0 0 chrY 2987647 2987677 -48525907 + AT_rich Low_complexity Low_complexity 1 30 0 244 148 0 33 chrY 2987798 2987859 -48525725 + L1MC4 LINE L1 6640 6698 -1344 * 6239 132 26 39 chrY 2987858 2989078 -48524506 + L1M1 LINE L1 2263 3467 -4098 2963 178 77 27 chrY 2989078 2989771 -48523813 + LTR8A LTR ERV1 1 727 0 544 258 85 42 chrY 2989771 2990051 -48523533 + HUERS-P1 LTR ERV1 1 387 -5876 4144 179 96 62 chrY 2990104 2991249 -48522335 + HUERS-P1 LTR ERV1 3 1624 -4639 * 11004 152 39 36 chrY 2991246 2991873 -48521711 + HUERS-P1 LTR ERV1 768 1392 -4932 2124 112 0 0 chrY 2991873 2992160 -48521424 + AluY SINE Alu 1 287 -24 11004 152 39 36 chrY 2992160 2995207 -48518377 + HUERS-P1 LTR ERV1 1392 5790 -534 1105 169 63 82 chrY 2995229 2995548 -48518036 + HUERS-P1 LTR ERV1 5914 6226 -105 812 255 111 16 chrY 2995553 2995796 -48517788 + HUERS-P1 LTR ERV1 5994 6259 -4 265 143 0 0 chrY 2995798 2995847 -48517737 + LTR8A LTR ERV1 1 49 -678 8443 182 23 15 chrY 2995849 2998720 -48514864 + L1MA2 LINE L1 3359 6263 -41 2203 140 34 3 chrY 2998720 2999070 -48514514 + THE1B LTR MaLR 1 361 -3 9710 125 32 32 chrY 2999073 3000653 -48512931 + THE1B-int LTR MaLR 1 1580 0 1095 134 0 0 chrY 3000653 3000810 -48512774 + THE1B LTR MaLR 1 157 -207 1156 198 16 43 chrY 3000829 3001087 -48512497 + L1M3 LINE L1 5503 5753 -430 * 4547 252 50 49 chrY 3001082 3003422 -48510162 + L1MB7 LINE L1 119 2584 -4373 25 0 0 0 chrY 3003593 3003618 -48509966 + AT_rich Low_complexity Low_complexity 1 25 0 233 195 0 0 chrY 3003833 3003874 -48509710 + (CA)n Simple_repeat Simple_repeat 2 42 0 2178 258 72 7 chrY 3003916 3004766 -48508818 + L1MB7 LINE L1 2874 3741 -3216 * 3181 246 103 25 chrY 3004760 3005357 -48508227 + L1MB7 LINE L1 4844 5394 -1601 2205 82 28 3 chrY 3005357 3005648 -48507936 + AluSp SINE Alu 1 298 -15 3181 246 103 25 chrY 3005648 3007027 -48506557 + L1MB7 LINE L1 5394 6986 -9 22 0 0 0 chrY 3007505 3007527 -48506057 + AT_rich Low_complexity Low_complexity 1 22 0 2434 281 38 19 chrY 3008150 3008999 -48504585 - L1ME1 LINE L1 -19 6147 5283 11745 208 81 15 chrY 3009006 3012932 -48500652 - L1PA16 LINE L1 -3 6866 2346 225 0 0 0 chrY 3012932 3012957 -48500627 + (TG)n Simple_repeat Simple_repeat 2 26 0 11745 208 81 15 chrY 3012957 3015469 -48498115 - L1PA16 LINE L1 -4523 2346 2 2386 260 27 22 chrY 3015499 3016346 -48497238 - L1ME1 LINE L1 -886 5260 4410 714 268 70 8 chrY 3016347 3016590 -48496994 - L1ME1 LINE L1 -1932 4214 3957 868 270 58 6 chrY 3016597 3016942 -48496642 - L1ME1 LINE L1 -3489 2657 2295 24 0 0 0 chrY 3017592 3017616 -48495968 + AT_rich Low_complexity Low_complexity 1 24 0 26 0 0 0 chrY 3020140 3020166 -48493418 + AT_rich Low_complexity Low_complexity 1 26 0 339 85 0 0 chrY 3020490 3020537 -48493047 + (CA)n Simple_repeat Simple_repeat 2 48 0 220 190 0 63 chrY 3021835 3021914 -48491670 + T-rich Low_complexity Low_complexity 2 75 0 22 0 0 0 chrY 3022552 3022574 -48491010 + AT_rich Low_complexity Low_complexity 1 22 0 2241 173 32 28 chrY 3023963 3024430 -48489154 - L1MC3 LINE L1 -21 7764 7296 1827 198 25 3 chrY 3024925 3025283 -48488301 + MLT2D LTR ERVL 1 366 -48 498 183 15 26 chrY 3025283 3025560 -48488024 + CT-rich Low_complexity Low_complexity 1 274 0 253 343 56 14 chrY 3025725 3025868 -48487716 + MIR SINE MIR 2 150 -112 1594 240 22 3 chrY 3026137 3026495 -48487089 - MLT1A1 LTR MaLR 0 365 1 7267 239 37 11 chrY 3026496 3028186 -48485398 - MLT1A1-int LTR MaLR -1 1734 1 1683 209 44 3 chrY 3028193 3028537 -48485047 - MLT1A1 LTR MaLR -7 358 1 478 272 28 65 chrY 3028769 3028986 -48484598 - L2 LINE L2 -1 3312 3104 288 252 52 35 chrY 3029014 3029129 -48484455 - MLT1L LTR MaLR 0 615 499 432 294 156 9 chrY 3029214 3029425 -48484159 - MLT1L LTR MaLR -228 387 146 186 346 93 9 chrY 3029537 3029644 -48483940 - L2 LINE L2 -1234 2080 1965 1856 299 63 14 chrY 3029650 3030464 -48483120 + L2 LINE L2 1215 2113 -1201 3995 213 18 13 chrY 3030493 3030821 -48482763 - L1MB7 LINE L1 -21 6163 5838 9027 109 13 0 chrY 3030821 3032092 -48481492 - HSMAR1 DNA Mariner 0 1287 1 3995 213 18 13 chrY 3032092 3032248 -48481336 - L1MB7 LINE L1 -346 5838 5684 1514 208 3 13 chrY 3032248 3032574 -48481010 + AluJb SINE Alu 1 312 0 3995 213 18 13 chrY 3032574 3033138 -48480446 - L1MB7 LINE L1 -500 5684 5107 1307 220 70 55 chrY 3033140 3033587 -48479997 - L1MB7 LINE L1 -1447 4699 4241 288 53 0 0 chrY 3033587 3033625 -48479959 + (TG)n Simple_repeat Simple_repeat 2 39 0 1307 220 70 55 chrY 3033625 3033705 -48479879 - L1MB7 LINE L1 -1905 4241 4164 1631 185 20 57 chrY 3033721 3034126 -48479458 - MLT1B LTR MaLR 0 390 1 5237 233 19 39 chrY 3034126 3034971 -48478613 - L1M4c LINE L1 -1844 5113 4310 261 0 0 0 chrY 3034971 3035000 -48478584 + (TTTG)n Simple_repeat Simple_repeat 2 30 0 5237 233 19 39 chrY 3035000 3035692 -48477892 - L1M4c LINE L1 -2647 4310 3606 4635 146 39 3 chrY 3035708 3036813 -48476771 + L1PA12 LINE L1 4903 6040 -128 2096 121 71 6 chrY 3036813 3037153 -48476431 + THE1B LTR MaLR 1 362 -2 6121 118 7 4 chrY 3037155 3038054 -48475530 + THE1B-int LTR MaLR 1 901 -679 930 191 48 48 chrY 3038056 3038266 -48475318 + THE1B LTR MaLR 153 362 -2 835 63 18 0 chrY 3038268 3038379 -48475205 + L1PA13 LINE L1 6036 6148 -15 23 68 0 0 chrY 3038403 3038447 -48475137 + AT_rich Low_complexity Low_complexity 1 44 0 4759 265 39 22 chrY 3038457 3042717 -48470867 - L1PBa LINE L1 -3387 3475 27 516 282 64 32 chrY 3042757 3043197 -48470387 - L1M4c LINE L1 -4099 3039 2586 956 275 57 51 chrY 3043347 3043609 -48469975 - L1M4c LINE L1 -4452 2686 2427 2119 109 0 23 chrY 3043609 3043912 -48469672 - AluSp SINE Alu -17 296 1 956 275 57 51 chrY 3043912 3044274 -48469310 - L1M4c LINE L1 -4711 2427 1907 * 3594 291 34 14 chrY 3044272 3045321 -48468263 - L1M4c LINE L1 -5782 1077 8 4373 168 37 28 chrY 3045577 3045859 -48467725 + L1MA5 LINE L1 4728 5006 -1294 800 235 0 25 chrY 3045859 3046021 -48467563 + FAM SINE Alu 1 158 -17 4373 168 37 28 chrY 3046021 3047133 -48466451 + L1MA5 LINE L1 5006 6119 -181 1081 191 106 50 chrY 3047135 3047554 -48466030 + LTR22 LTR ERVK 1 509 0 2029 128 0 0 chrY 3047554 3047874 -48465710 - AluY SINE Alu 0 320 1 998 144 39 0 chrY 3047874 3048054 -48465530 + L1MA5 LINE L1 6108 6294 -6 4684 204 28 26 chrY 3048299 3049574 -48464010 - L1MA10 LINE L1 -14 6320 5038 269 305 104 36 chrY 3049721 3050134 -48463450 + L1 LINE L1 3718 4158 -1988 382 304 96 30 chrY 3050277 3050507 -48463077 + L1 LINE L1 4311 4555 -1591 6224 68 2 0 chrY 3050600 3051400 -48462184 - L1PA8 LINE L1 -5 6167 5366 1768 102 0 4 chrY 3051397 3051662 -48461922 + L1PA8 LINE L1 5076 5339 -807 * 953 259 124 45 chrY 3051854 3052321 -48461263 - MLT1J LTR MaLR -7 504 1 205 194 0 0 chrY 3052361 3052397 -48461187 - MER5A DNA MER1_type 0 189 154 1591 236 67 8 chrY 3052400 3052761 -48460823 + MLT1E LTR MaLR 206 587 -6 402 285 5 113 chrY 3053047 3053268 -48460316 - MER3 DNA MER1_type 0 209 13 932 276 114 52 chrY 3053572 3054036 -48459548 + HsTC2a DNA Tc2 3 495 -249 849 206 0 0 chrY 3054045 3054186 -48459398 - FRAM SINE Alu -23 153 13 560 209 118 14 chrY 3054194 3054405 -48459179 + HsTC2a DNA Tc2 499 731 -11 264 258 0 22 chrY 3054417 3054506 -48459078 + (TAA)n Simple_repeat Simple_repeat 3 89 0 28 29 0 0 chrY 3055080 3055115 -48458469 + AT_rich Low_complexity Low_complexity 1 35 0 555 305 79 41 chrY 3055121 3055515 -48458069 + MLT1H1 LTR MaLR 1 409 -146 2486 168 34 6 chrY 3055630 3056130 -48457454 + L1MA3 LINE L1 5786 6299 -6 480 282 84 19 chrY 3056343 3056516 -48457068 + L1MC4 LINE L1 7446 7637 -405 1705 197 28 17 chrY 3056516 3056877 -48456707 - MLT1A1 LTR MaLR 0 365 1 480 282 84 19 chrY 3056877 3056916 -48456668 + L1MC4 LINE L1 7637 7672 -370 676 211 66 13 chrY 3056931 3057083 -48456501 + MER31B LTR ERV1 1 160 -306 3769 182 68 73 chrY 3057127 3058046 -48455538 + MER21A LTR ERV1 1 914 -17 611 237 58 48 chrY 3058077 3058284 -48455300 + MER31B LTR ERV1 254 462 -4 23 0 0 0 chrY 3058430 3058453 -48455131 + AT_rich Low_complexity Low_complexity 1 23 0 210 128 0 0 chrY 3058497 3058536 -48455048 + (TG)n Simple_repeat Simple_repeat 2 40 0 852 257 29 86 chrY 3058773 3059147 -48454437 - HsTC2c DNA Tc2 -3 726 374 391 245 0 0 chrY 3059289 3059383 -48454201 + L1 LINE L1 5203 5296 -850 189 0 0 0 chrY 3059383 3059404 -48454180 + (CAAAA)n Simple_repeat Simple_repeat 2 22 0 4143 143 18 83 chrY 3059407 3060300 -48453284 + L1PA6 LINE L1 5309 6143 -11 207 0 0 0 chrY 3060303 3060326 -48453258 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 409 304 82 62 chrY 3060492 3060735 -48452849 - MLT1G1 LTR MaLR -185 410 163 358 285 78 43 chrY 3060951 3061411 -48452173 + L1 LINE L1 4759 5234 -912 266 344 8 8 chrY 3061680 3061802 -48451782 + CT-rich Low_complexity Low_complexity 1 122 0 4519 273 32 21 chrY 3061917 3062905 -48450679 + L1PBa LINE L1 7 1064 -5799 408 20 0 0 chrY 3062905 3062954 -48450630 + (CA)n Simple_repeat Simple_repeat 2 50 0 4519 273 32 21 chrY 3062954 3063526 -48450058 + L1PBa LINE L1 1064 1628 -5235 * 4522 199 64 10 chrY 3063502 3064441 -48449143 + L1PA15 LINE L1 660 1649 -5214 33 25 0 0 chrY 3064442 3064482 -48449102 + AT_rich Low_complexity Low_complexity 1 40 0 7037 214 26 82 chrY 3064482 3066098 -48447486 + L1PA15 LINE L1 1952 3656 -3206 800 204 34 0 chrY 3066098 3066245 -48447339 + AluSp SINE Alu 132 283 -30 180 0 0 0 chrY 3066248 3066268 -48447316 + (TAAA)n Simple_repeat Simple_repeat 2 21 0 7037 214 26 82 chrY 3066268 3067619 -48445965 + L1PA15 LINE L1 3658 4982 -1880 2870 283 58 9 chrY 3067607 3068962 -48444622 + L1M4 LINE L1 2367 3788 -2358 * 5153 192 10 9 chrY 3069055 3070506 -48443078 + L1PA15 LINE L1 5068 6520 -361 585 88 0 0 chrY 3070506 3070586 -48442998 - MADE1 DNA Mariner 0 80 1 5153 192 10 9 chrY 3070586 3070926 -48442658 + L1PA15 LINE L1 6520 6858 -23 243 0 0 0 chrY 3070933 3070960 -48442624 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 559 244 81 11 chrY 3070962 3071265 -48442319 + MSTD LTR MaLR 32 396 0 1493 218 64 8 chrY 3071334 3071692 -48441892 + MSTB1 LTR MaLR 3 380 -52 1739 270 20 30 chrY 3071701 3072027 -48441557 - L1 LINE L1 -3381 2765 2446 528 16 0 0 chrY 3072027 3072088 -48441496 + (TA)n Simple_repeat Simple_repeat 1 61 0 1739 270 20 30 chrY 3072088 3072361 -48441223 - L1 LINE L1 -3700 2446 2172 6207 152 12 3 chrY 3072371 3073613 -48439971 - L1MA1 LINE L1 -7 7714 6461 7027 200 28 20 chrY 3074162 3074241 -48439343 - L1MA1 LINE L1 -1097 6468 6391 1654 150 48 58 chrY 3074241 3074620 -48438964 - THE1C LTR MaLR 0 375 1 7027 200 28 20 chrY 3074620 3076202 -48437382 - L1MA1 LINE L1 -1174 6391 4793 * 18062 197 24 20 chrY 3076200 3078780 -48434804 - L1MA1 LINE L1 -3198 4367 1759 183 42 0 0 chrY 3078780 3078804 -48434780 + (TC)n Simple_repeat Simple_repeat 1 24 0 18062 197 24 20 chrY 3078804 3080509 -48433075 - L1MA1 LINE L1 -5806 1759 63 391 186 30 46 chrY 3080509 3080627 -48432957 + MSTB1 LTR MaLR 249 432 0 187 255 78 98 chrY 3082160 3082262 -48431322 + MIR SINE MIR 137 236 -26 283 288 12 12 chrY 3082949 3083029 -48430555 + HAL1 LINE L1 757 836 -1671 300 281 42 10 chrY 3083103 3083199 -48430385 + L1MEc LINE L1 380 478 -5918 1365 285 41 32 chrY 3083227 3083728 -48429856 + L1MEc LINE L1 46 599 -5797 2291 98 0 7 chrY 3083728 3084033 -48429551 - AluSq SINE Alu -8 305 3 1365 285 41 32 chrY 3084033 3084210 -48429374 + L1MEc LINE L1 599 773 -5623 362 251 181 17 chrY 3084231 3084518 -48429066 + L1MEc LINE L1 980 1313 -5083 1246 256 89 32 chrY 3084544 3085020 -48428564 - LTR40b LTR ERVL 0 462 3 619 215 7 20 chrY 3085020 3085168 -48428416 - MER3 DNA MER1_type -51 158 13 350 325 40 8 chrY 3085211 3085337 -48428247 - MIR SINE MIR -76 186 57 729 280 144 89 chrY 3085375 3085475 -48428109 + MLT1G1 LTR MaLR 1 94 -501 1611 104 27 5 chrY 3085475 3085695 -48427889 + AluSg SINE Alu 1 225 -85 729 280 144 89 chrY 3085695 3086158 -48427426 + MLT1G1 LTR MaLR 94 595 0 2242 180 56 7 chrY 3087395 3087822 -48425762 + MER83 LTR ERV1 1 448 0 1387 183 23 12 chrY 3087822 3088079 -48425505 + MER83-int LTR ERV1 12 271 -4014 535 105 0 0 chrY 3088079 3088155 -48425429 + MSTA LTR MaLR 353 428 0 4084 123 63 11 chrY 3088155 3088804 -48424780 + MSTA-int LTR MaLR 1 683 -897 894 103 76 19 chrY 3088804 3088986 -48424598 + THE1C LTR MaLR 221 375 0 920 307 65 43 chrY 3089324 3089866 -48423718 - HUERS-P3 LTR ERV1 -1298 5231 4692 456 313 44 67 chrY 3090169 3090740 -48422844 - HUERS-P3 LTR ERV1 -1797 5294 3971 276 346 26 6 chrY 3090845 3091001 -48422583 - HUERS-P3 LTR ERV1 -4280 4639 4481 5116 126 7 0 chrY 3091030 3092148 -48421436 - THE1C-int LTR MaLR -413 1167 3 1942 144 87 17 chrY 3092150 3092496 -48421088 - THE1C LTR MaLR 0 375 6 23 0 0 0 chrY 3093228 3093251 -48420333 + AT_rich Low_complexity Low_complexity 1 23 0 2098 185 28 3 chrY 3093296 3093686 -48419898 + MER50-int LTR ERV1 1927 2326 -1959 382 338 62 40 chrY 3094670 3095090 -48418494 + MER50-int LTR ERV1 6257 6685 -520 10931 211 34 59 chrY 3095278 3095711 -48417873 - L1M1 LINE L1 -5073 2492 2049 4702 107 58 69 chrY 3095711 3096542 -48417042 - LTR12 LTR ERV1 0 826 5 10931 211 34 59 chrY 3096542 3099139 -48414445 - L1M1 LINE L1 -5516 2049 17 323 85 34 0 chrY 3100201 3100260 -48413324 + (TCTA)n Simple_repeat Simple_repeat 4 64 0 564 384 98 18 chrY 3101120 3101557 -48412027 - L2 LINE L2 -653 2661 2190 617 256 26 67 chrY 3101902 3102028 -48411556 + MIR SINE MIR 4 134 -128 388 0 0 0 chrY 3102028 3102071 -48411513 + (TTA)n Simple_repeat Simple_repeat 1 180 0 1733 168 4 0 chrY 3102071 3102351 -48411233 - AluJb SINE Alu -31 281 1 617 256 26 67 chrY 3102351 3102493 -48411091 + MIR SINE MIR 132 262 0 483 359 70 16 chrY 3103010 3103439 -48410145 - L2 LINE L2 -1195 2119 1668 2278 100 0 7 chrY 3103491 3103800 -48409784 + AluSg SINE Alu 1 307 -3 259 349 19 9 chrY 3105126 3105232 -48408352 - MIR SINE MIR -105 157 51 563 291 93 0 chrY 3105616 3105798 -48407786 + MLT1E3 LTR MaLR 1 199 -425 450 235 35 0 chrY 3105816 3105931 -48407653 - L1MA9 LINE L1 -22 6290 6172 891 212 35 0 chrY 3105935 3106133 -48407451 - L1MA9 LINE L1 -241 6071 5867 1379 239 68 24 chrY 3106168 3106548 -48407036 + MLT1E3 LTR MaLR 223 619 -5 1191 228 35 25 chrY 3106830 3107146 -48406438 - PABL_B LTR ERV1 0 667 349 295 336 34 39 chrY 3107159 3107367 -48406217 - PABL_B LTR ERV1 -460 207 1 941 243 16 78 chrY 3108028 3108477 -48405107 + L1MB4 LINE L1 609 1029 -5251 507 252 0 67 chrY 3108477 3108521 -48405063 + MER21B LTR ERV1 328 373 -490 2350 118 78 10 chrY 3108521 3108918 -48404666 - MSTA LTR MaLR 0 428 5 507 252 0 67 chrY 3108918 3108992 -48404592 + MER21B LTR ERV1 373 438 -425 2158 190 5 12 chrY 3109129 3109534 -48404050 + MER21B LTR ERV1 455 856 -7 1209 172 10 0 chrY 3109565 3109769 -48403815 + MER21B-int LTR ERV1 18 223 -3968 3079 146 36 9 chrY 3109769 3110366 -48403218 + MER4B LTR ERV1 1 779 0 2126 170 8 16 chrY 3110366 3110748 -48402836 + MER21B-int LTR ERV1 220 598 -3593 3436 154 11 75 chrY 3110748 3111486 -48402098 - LTR8 LTR ERV1 0 691 1 1313 211 13 0 chrY 3111486 3111723 -48401861 + MER21B-int LTR ERV1 1561 1800 -2391 3551 206 22 44 chrY 3111752 3112058 -48401526 + MER21B-int LTR ERV1 1644 1955 -2236 2154 145 47 28 chrY 3112058 3112486 -48401098 + LTR23 LTR ERV1 2 437 0 3551 206 22 44 chrY 3112486 3112994 -48400590 + MER21B-int LTR ERV1 1955 2440 -1751 18049 84 11 12 chrY 3112994 3118725 -48394859 + L1PA6 LINE L1 365 6153 -1 8897 170 45 22 chrY 3118821 3120484 -48393100 + MER21B-int LTR ERV1 2428 4129 -62 2190 232 85 0 chrY 3120569 3121030 -48392554 + MER21B LTR ERV1 1 500 -363 4453 269 77 15 chrY 3121030 3124396 -48389188 + L1MB4 LINE L1 1030 4721 -1661 3336 104 2 0 chrY 3124402 3124854 -48388730 + MLT2A2 LTR ERVL 1 453 0 41522 97 10 2 chrY 3124855 3130464 -48383120 + HERVL-A2 LTR ERVL 2 5654 0 3306 104 4 0 chrY 3130464 3130915 -48382669 + MLT2A2 LTR ERVL 1 453 0 260 197 0 16 chrY 3130930 3130991 -48382593 + L1MB4 LINE L1 4769 4828 -1554 637 179 41 16 chrY 3131013 3131136 -48382448 - FLAM_C SINE Alu -17 126 1 3177 212 99 11 chrY 3131192 3132619 -48380965 + L1MB4 LINE L1 4875 6416 0 431 262 87 59 chrY 3132686 3133075 -48380509 + L1ME3A LINE L1 1173 1572 -4958 31 113 0 0 chrY 3133150 3133300 -48380284 + AT_rich Low_complexity Low_complexity 1 150 0 269 316 27 0 chrY 3133337 3133515 -48380069 + L1ME3A LINE L1 1675 1911 -990 25 31 0 0 chrY 3133730 3133762 -48379822 + AT_rich Low_complexity Low_complexity 1 32 0 353 331 99 11 chrY 3133959 3134290 -48379294 + L1ME3A LINE L1 2334 2684 -3856 229 225 72 45 chrY 3134428 3134539 -48379045 + L1MC5 LINE L1 7331 7444 -517 428 268 36 14 chrY 3134617 3134837 -48378747 + L1MC5 LINE L1 7555 7779 -182 1832 108 37 65 chrY 3134969 3135321 -48378263 + L1MA9 LINE L1 5971 6312 0 21 0 0 0 chrY 3135324 3135345 -48378239 + AT_rich Low_complexity Low_complexity 1 21 0 442 297 14 62 chrY 3135495 3135704 -48377880 - MLT1K LTR MaLR -12 576 378 562 258 126 28 chrY 3138117 3138473 -48375111 + L1ME3A LINE L1 4955 5345 -1195 386 279 37 25 chrY 3138535 3138696 -48374888 + LTR65 LTR ERV1 2 164 -505 323 247 17 33 chrY 3138881 3139001 -48374583 + LTR65 LTR ERV1 539 604 -10 525 257 15 80 chrY 3139011 3139350 -48374234 + L1ME3A LINE L1 5402 5718 -822 1148 261 23 37 chrY 3139400 3139833 -48373751 + L1ME3A LINE L1 5947 6373 -191 1788 215 18 5 chrY 3140491 3140873 -48372711 - MLT1B LTR MaLR -3 387 1 27 0 0 0 chrY 3140915 3140942 -48372642 + AT_rich Low_complexity Low_complexity 1 27 0 1127 173 40 108 chrY 3141052 3141404 -48372180 + MLT1B LTR MaLR 1 328 -62 655 275 26 11 chrY 3141404 3141593 -48371991 - MLT1A1 LTR MaLR 0 365 174 460 192 102 114 chrY 3141661 3141828 -48371756 - MLT1A1 LTR MaLR -171 194 30 286 203 17 0 chrY 3141841 3141900 -48371684 + MLT1B LTR MaLR 331 390 0 5009 152 4 0 chrY 3142044 3143564 -48370020 - L1PA13 LINE L1 0 6814 5282 1135 125 0 0 chrY 3143564 3143716 -48369868 - AluSp SINE Alu -28 285 134 13165 222 23 16 chrY 3143721 3148945 -48364639 - L1PA13 LINE L1 -1510 5287 1 556 190 10 2 chrY 3149002 3149115 -48364469 + L1ME LINE L1 5618 5727 -439 246 219 0 0 chrY 3149243 3149307 -48364277 + (TA)n Simple_repeat Simple_repeat 2 65 0 222 159 23 0 chrY 3149367 3149411 -48364173 + A-rich Low_complexity Low_complexity 1 45 0 365 347 92 20 chrY 3149497 3149941 -48363643 + L1MEc LINE L1 55 530 -5866 295 265 22 49 chrY 3150049 3150234 -48363350 + L1MEc LINE L1 688 867 -5529 * 2168 258 30 27 chrY 3150215 3151107 -48362477 + L1MEc LINE L1 2345 3239 -2976 231 163 0 0 chrY 3151128 3151171 -48362413 - L1PA15-16 LINE L1 -4015 2834 2792 3033 116 28 47 chrY 3151216 3151744 -48361840 + L1PA13 LINE L1 5645 6162 -1 3163 255 37 21 chrY 3151754 3152870 -48360714 + L1 LINE L1 2148 3280 -2866 2361 133 24 5 chrY 3152869 3153244 -48360340 + MSTA-int LTR MaLR 1270 1651 0 * 2212 133 84 30 chrY 3153244 3153304 -48360280 + MSTA LTR MaLR 1 56 -372 2121 132 0 0 chrY 3153304 3153600 -48359984 + AluSx SINE Alu 1 296 -16 2212 133 84 30 chrY 3153600 3153945 -48359639 + MSTA LTR MaLR 56 428 0 416 141 26 0 chrY 3154613 3154691 -48358893 + MADE1 DNA Mariner 1 80 0 210 37 0 0 chrY 3155102 3155129 -48358455 + (TC)n Simple_repeat Simple_repeat 2 28 0 252 234 28 28 chrY 3155131 3155272 -48358312 + (TATAA)n Simple_repeat Simple_repeat 5 145 0 21 57 0 0 chrY 3155726 3155761 -48357823 + AT_rich Low_complexity Low_complexity 1 35 0 337 293 77 24 chrY 3155806 3156052 -48357532 - L1MC5 LINE L1 -209 7752 7494 599 211 184 14 chrY 3156078 3156225 -48357359 + MER5A DNA MER1_type 17 188 -1 252 337 0 0 chrY 3156227 3156316 -48357268 - L1MC5 LINE L1 -527 7434 7346 1204 287 91 48 chrY 3156494 3158041 -48355543 - L1MC4 LINE L1 -735 7226 5612 1395 256 72 88 chrY 3158062 3158617 -48354967 + MLT2B3 LTR ERVL 1 546 -8 1652 232 32 22 chrY 3158621 3159022 -48354562 - LTR52 LTR ERVL -10 411 7 542 240 101 29 chrY 3159022 3159116 -48354468 - L1MC4 LINE L1 -2215 5593 5507 183 42 0 0 chrY 3159116 3159140 -48354444 + (CAAA)n Simple_repeat Simple_repeat 2 25 0 542 240 101 29 chrY 3159140 3159253 -48354331 - L1MC4 LINE L1 -2301 5507 5371 24 0 0 0 chrY 3159371 3159395 -48354189 + AT_rich Low_complexity Low_complexity 1 24 0 493 201 186 25 chrY 3161379 3161578 -48352006 - L1MC/D LINE L1 -2323 5554 5324 245 314 69 25 chrY 3161832 3162077 -48351507 - L1MC/D LINE L1 -1167 5048 4793 3633 142 44 64 chrY 3162315 3163019 -48350565 + LTR8 LTR ERV1 2 691 0 734 189 154 12 chrY 3163027 3163196 -48350388 - MER6B DNA MER2_type -3 207 15 245 326 0 11 chrY 3165448 3165537 -48348047 - Charlie8 DNA MER1_type -2199 218 131 672 241 14 50 chrY 3166824 3167200 -48346384 - L1MEc LINE L1 -3669 2546 688 467 349 36 45 chrY 3167226 3167558 -48346026 - L1MEc LINE L1 -5830 566 238 323 306 31 0 chrY 3169160 3169258 -48344326 + L1MC4 LINE L1 6602 6702 -1340 2131 124 7 7 chrY 3169353 3169660 -48343924 + AluSg1 SINE Alu 1 307 -2 433 182 91 0 chrY 3169727 3169826 -48343758 - L1ME LINE L1 -439 5727 5620 16923 209 31 9 chrY 3169889 3174085 -48339499 + L1PA13 LINE L1 1 4468 -2346 180 0 0 0 chrY 3174085 3174105 -48339479 + (CAA)n Simple_repeat Simple_repeat 2 21 0 16923 209 31 9 chrY 3174105 3176502 -48337082 + L1PA13 LINE L1 4468 6811 -3 5754 201 25 29 chrY 3177588 3179087 -48334497 + L1PB1 LINE L1 3871 5363 -783 894 106 0 8 chrY 3179080 3179212 -48334372 + L1PA11 LINE L1 5725 5855 -319 * 5077 110 26 3 chrY 3179211 3179972 -48333612 + L1PB1 LINE L1 5367 6145 -6 249 362 75 32 chrY 3180009 3180197 -48333387 - MLT1K LTR MaLR -188 400 205 2909 155 8 10 chrY 3180447 3180944 -48332640 + L1PA13 LINE L1 5668 6163 0 244 277 24 0 chrY 3180946 3181029 -48332555 - L1M4 LINE L1 -1587 4559 4475 1877 243 34 22 chrY 3181053 3181499 -48332085 - L1M3 LINE L1 -393 5790 5336 2129 127 3 3 chrY 3181499 3181798 -48331786 - AluSx SINE Alu -13 299 1 1877 243 34 22 chrY 3181798 3181957 -48331627 - L1M3 LINE L1 -847 5336 5180 5138 202 9 36 chrY 3181961 3182662 -48330922 - MSTA-int LTR MaLR -610 1041 323 2240 114 0 10 chrY 3182662 3182969 -48330615 - AluSx SINE Alu -5 307 4 5138 202 9 36 chrY 3182969 3182985 -48330599 - MSTA-int LTR MaLR -1328 323 308 2108 102 0 60 chrY 3182985 3183300 -48330284 - AluSg SINE Alu -12 298 3 5138 202 9 36 chrY 3183300 3183463 -48330121 - MSTA-int LTR MaLR -1343 308 192 3046 186 26 2 chrY 3183463 3184007 -48329577 - MER41D LTR ERV1 0 557 1 5138 202 9 36 chrY 3184007 3184194 -48329390 - MSTA-int LTR MaLR -1459 192 1 2249 165 54 2 chrY 3184194 3184601 -48328983 - MSTA LTR MaLR 0 428 1 2032 136 10 0 chrY 3184876 3185171 -48328413 - AluSg SINE Alu -12 298 1 26 0 0 0 chrY 3185210 3185236 -48328348 + AT_rich Low_complexity Low_complexity 1 26 0 482 276 111 19 chrY 3185263 3185778 -48327806 - L1M3 LINE L1 -1445 4701 4140 660 215 27 16 chrY 3185875 3186061 -48327523 - MER53 DNA DNA 0 189 2 256 290 91 46 chrY 3186516 3187503 -48326081 - L1M3 LINE L1 -2663 3483 2452 1275 233 73 59 chrY 3187590 3188024 -48325560 - MLT2C2 LTR ERVL -20 534 1 307 238 171 45 chrY 3188059 3188328 -48325256 - L1M3 LINE L1 -3734 2412 2110 27 0 0 0 chrY 3188718 3188745 -48324839 + AT_rich Low_complexity Low_complexity 1 27 0 1068 78 0 0 chrY 3188756 3188884 -48324700 + AluSq/x SINE Alu 6 133 -180 219 69 0 0 chrY 3188884 3188913 -48324671 + (A)n Simple_repeat Simple_repeat 1 29 0 256 150 0 0 chrY 3188931 3188971 -48324613 + Alu SINE Alu 252 291 -11 624 274 48 6 chrY 3189343 3189511 -48324073 - MER20 DNA MER1_type -11 208 34 236 116 93 0 chrY 3189544 3189587 -48323997 - MLT1D LTR MaLR -9 496 450 17317 180 35 43 chrY 3189591 3193109 -48320475 + L1MA2 LINE L1 12 3556 -4167 195 42 0 0 chrY 3193109 3193133 -48320451 + (GGAGA)n Simple_repeat Simple_repeat 1 24 0 17317 180 35 43 chrY 3193133 3193239 -48320345 + L1MA2 LINE L1 3556 3661 -4062 2307 82 0 0 chrY 3193239 3193580 -48320004 + AluY SINE Alu 1 311 0 17317 180 35 43 chrY 3193580 3196137 -48317447 + L1MA2 LINE L1 3661 6167 -1556 1902 88 0 0 chrY 3196137 3196376 -48317208 + AluY SINE Alu 1 239 -72 17317 180 35 43 chrY 3196376 3197921 -48315663 + L1MA2 LINE L1 6167 7723 0 288 77 0 0 chrY 3197978 3198017 -48315567 + (A)n Simple_repeat Simple_repeat 1 39 0 4785 173 70 37 chrY 3198035 3198653 -48314931 + L1MA4 LINE L1 4681 5277 -1023 2248 117 0 0 chrY 3198653 3198962 -48314622 + AluSc SINE Alu 1 309 0 4785 173 70 37 chrY 3198962 3199899 -48313685 + L1MA4 LINE L1 5277 6289 -11 2365 71 3 0 chrY 3199899 3200194 -48313390 - AluY SINE Alu -15 296 1 1542 252 63 43 chrY 3200273 3200718 -48312866 - MLT1D LTR MaLR -51 454 1 378 323 44 44 chrY 3200719 3200877 -48312707 - MLT1H LTR MaLR -210 339 182 387 191 53 11 chrY 3201139 3201233 -48312351 - L1MEd LINE L1 -4867 1252 1155 260 241 55 21 chrY 3201270 3201415 -48312169 - HAL1 LINE L1 -335 2172 2023 1361 101 10 0 chrY 3201800 3201998 -48311586 + L1PB1 LINE L1 5950 6149 -2 22 0 0 0 chrY 3201999 3202021 -48311563 + AT_rich Low_complexity Low_complexity 1 22 0 1416 255 125 33 chrY 3202049 3202751 -48310833 + HAL1 LINE L1 1010 1776 -731 5054 254 14 10 chrY 3202829 3205075 -48308509 - L1PA12 LINE L1 -3154 4430 2233 263 360 13 20 chrY 3205644 3205797 -48307787 - L1PA12 LINE L1 -5269 2305 2154 610 383 29 11 chrY 3206070 3206417 -48307167 - L1PA12 LINE L1 -6434 1140 788 1744 221 26 0 chrY 3206428 3206808 -48306776 - MER57A LTR ERV1 -6 397 8 2313 109 0 0 chrY 3207236 3207540 -48306044 + AluY SINE Alu 1 304 -7 482 192 295 17 chrY 3208462 3208774 -48304810 + LTR29 LTR ERV1 1 424 -198 * 713 160 72 46 chrY 3208742 3208936 -48304648 + LTR49 LTR ERV1 395 593 -2 216 352 48 8 chrY 3209446 3209571 -48304013 - L2 LINE L2 -43 3270 3141 692 343 53 60 chrY 3209737 3209758 -48303826 - L2 LINE L2 -157 3156 3136 378 0 0 0 chrY 3209758 3209800 -48303784 + (TA)n Simple_repeat Simple_repeat 2 43 0 692 343 53 60 chrY 3209800 3210516 -48303068 - L2 LINE L2 -177 3136 2435 1071 201 69 3 chrY 3211368 3211657 -48301927 + L1MB5 LINE L1 5616 5923 -251 3267 246 25 37 chrY 3211675 3212815 -48300769 + L1MB5 LINE L1 4194 5319 -827 2788 205 50 72 chrY 3212820 3213121 -48300463 + L1MB5 LINE L1 5274 5580 -594 1115 247 92 86 chrY 3213121 3213729 -48299855 + LTR9 LTR ERV1 1 612 0 2788 205 50 72 chrY 3213729 3214346 -48299238 + L1MB5 LINE L1 5580 6172 -2 2425 101 62 0 chrY 3214830 3215185 -48298399 - MER51B LTR ERV1 0 377 1 7175 150 81 43 chrY 3215189 3217284 -48296300 - MER51B-int LTR ERV1 -4 7812 5407 1776 137 8 6 chrY 3217278 3217668 -48295916 - MER51-int LTR ERV1 -2570 2647 2213 * 1714 154 78 17 chrY 3217664 3218125 -48295459 - MER51-int LTR ERV1 -2774 3172 1474 * 360 141 103 0 chrY 3218097 3218175 -48295409 - MER51-int LTR ERV1 -4489 3327 3242 * 1458 117 94 2 chrY 3218158 3218491 -48295093 - MER51-int LTR ERV1 -4755 3061 2577 623 149 62 72 chrY 3218491 3219115 -48294469 + SVA Other Other 452 643 -743 5273 102 21 5 chrY 3219219 3220108 -48293476 - MER51-int LTR ERV1 -5103 2713 1810 627 210 17 73 chrY 3220108 3220286 -48293298 - MER4A LTR ERV1 -131 741 372 266 167 0 0 chrY 3220328 3220376 -48293208 - MER4A LTR ERV1 -566 98 51 4064 148 44 24 chrY 3220376 3220794 -48292790 - MER51-int LTR ERV1 -6305 1511 1068 2107 114 7 10 chrY 3220794 3221101 -48292483 - AluSg SINE Alu -3 307 2 4064 148 44 24 chrY 3221101 3221475 -48292109 - MER51-int LTR ERV1 -6748 1068 703 3496 53 2 7 chrY 3221475 3221925 -48291659 + LTR7 LTR ERV1 1 448 -2 19365 95 6 18 chrY 3221927 3224951 -48288633 + HERVH LTR ERV1 1 2987 -4726 787 150 27 0 chrY 3224945 3225092 -48288492 + HERVH LTR ERV1 3140 3290 -4423 * 1267 149 0 5 chrY 3225082 3225296 -48288288 + HERVH LTR ERV1 3492 3704 -4009 1290 134 18 5 chrY 3225399 3225616 -48287968 + HERVH LTR ERV1 5600 5819 -1894 1962 70 55 16 chrY 3225639 3225951 -48287633 + HERVH LTR ERV1 7390 7713 0 3363 62 2 7 chrY 3225951 3226401 -48287183 + LTR7 LTR ERV1 1 448 -2 3345 180 54 15 chrY 3226401 3227083 -48286501 - MER51B-int LTR ERV1 -7107 709 1 2343 119 57 0 chrY 3227087 3227440 -48286144 - MER51B LTR ERV1 -4 373 1 2293 65 7 19 chrY 3227633 3227940 -48285644 + AluY SINE Alu 1 303 -8 4486 128 31 7 chrY 3228116 3228867 -48284717 + MER4E LTR ERV1 1 769 -10 22 35 0 0 chrY 3229220 3229249 -48284335 + AT_rich Low_complexity Low_complexity 1 29 0 1261 186 17 8 chrY 3230026 3230262 -48283322 + AluJo SINE Alu 66 303 -9 519 17 0 0 chrY 3230451 3230511 -48283073 + (TAGA)n Simple_repeat Simple_repeat 2 61 0 561 290 65 0 chrY 3230722 3230891 -48282693 - MIR SINE MIR -42 220 41 14559 192 27 8 chrY 3230923 3233887 -48279697 + L1MA1 LINE L1 14 3033 -4532 9521 206 19 2 chrY 3233885 3235638 -48277946 + L1MA1 LINE L1 4342 6144 -1421 * 186 43 0 0 chrY 3235638 3235661 -48277923 + (CAAAA)n Simple_repeat Simple_repeat 3 25 0 9521 206 19 2 chrY 3235661 3236189 -48277395 + L1MA1 LINE L1 6144 6662 -903 1628 153 220 11 chrY 3236189 3236374 -48277210 - MSTA LTR MaLR 0 428 283 180 0 0 0 chrY 3236374 3236394 -48277190 + (GA)n Simple_repeat Simple_repeat 1 20 0 1628 153 220 11 chrY 3236394 3236562 -48277022 - MSTA LTR MaLR -145 283 1 9459 144 7 35 chrY 3236562 3238184 -48275400 - MSTA-int LTR MaLR 0 1580 3 1115 181 141 82 chrY 3238186 3238540 -48275044 - MSTA LTR MaLR 0 428 1 6003 120 36 9 chrY 3238541 3239576 -48274008 + L1MA1 LINE L1 6659 7721 0 266 133 0 0 chrY 3239583 3239628 -48273956 + L1PA16 LINE L1 6120 6164 -2 2945 6 0 0 chrY 3240759 3241077 -48272507 + AluYb8 SINE Alu 1 318 0 486 33 0 0 chrY 3241275 3241335 -48272249 + (CA)n Simple_repeat Simple_repeat 1 60 0 27 29 0 0 chrY 3241336 3241370 -48272214 + AT_rich Low_complexity Low_complexity 1 34 0 450 178 69 23 chrY 3242313 3242487 -48271097 - MER53 DNA DNA -1 188 7 22 94 0 0 chrY 3242570 3242634 -48270950 + AT_rich Low_complexity Low_complexity 1 64 0 195 316 105 0 chrY 3243131 3243226 -48270358 - MIR SINE MIR -54 208 104 1295 258 31 19 chrY 3243252 3243670 -48269914 + L1ME1 LINE L1 5695 6117 -49 36 53 0 0 chrY 3243675 3243732 -48269852 + AT_rich Low_complexity Low_complexity 1 57 0 22 0 0 0 chrY 3244047 3244069 -48269515 + AT_rich Low_complexity Low_complexity 1 22 0 1063 247 47 16 chrY 3244098 3244478 -48269106 + L1ME2 LINE L1 5764 6155 -9 25 31 0 0 chrY 3244546 3244578 -48269006 + AT_rich Low_complexity Low_complexity 1 32 0 195 280 67 13 chrY 3245318 3245393 -48268191 + L2 LINE L2 3164 3242 -71 1859 213 72 0 chrY 3245433 3245823 -48267761 - MER47B DNA MER2_type 0 418 1 612 353 19 8 chrY 3246339 3246597 -48266987 + MIR SINE MIR 1 261 -1 5741 116 12 3 chrY 3248606 3249682 -48263902 - L1PB1 LINE L1 0 6151 5069 334 200 0 0 chrY 3249690 3249750 -48263834 + L1 LINE L1 4560 4619 -1527 1734 229 69 55 chrY 3250714 3251370 -48262214 - L1ME2 LINE L1 -1 6163 5499 1379 207 58 29 chrY 3251375 3251718 -48261866 - MLT1A1 LTR MaLR -12 353 1 308 296 84 7 chrY 3251798 3251940 -48261644 - L1MEc LINE L1 -5716 680 528 228 213 0 67 chrY 3251970 3252045 -48261539 - L1MEc LINE L1 -6292 104 35 7055 222 14 4 chrY 3252091 3253714 -48259870 + L1PBa LINE L1 6 1643 -5220 * 13440 209 23 15 chrY 3253685 3257308 -48256276 + L1PB2 LINE L1 11 3800 -2408 4099 75 2 0 chrY 3257308 3257841 -48255743 + L1PA7 LINE L1 5618 6151 -3 13440 209 23 15 chrY 3257841 3260270 -48253314 + L1PB2 LINE L1 3800 6207 -1 1749 278 42 4 chrY 3260275 3260965 -48252619 - L1M4 LINE L1 -3113 3033 2318 464 273 54 88 chrY 3261284 3261746 -48251838 + MLT1H LTR MaLR 1 548 -1 263 140 0 0 chrY 3261902 3261952 -48251632 + L1MA9 LINE L1 6212 6261 -51 978 153 18 0 chrY 3263537 3263707 -48249877 + L1P4 LINE L1 5429 5601 -562 1949 143 32 37 chrY 3264016 3264393 -48249191 + THE1C LTR MaLR 1 375 0 1872 162 12 137 chrY 3264399 3264888 -48248696 + MSTC LTR MaLR 1 428 0 358 230 98 102 chrY 3265334 3265599 -48247985 + L1MEc LINE L1 744 1007 -5198 816 254 59 36 chrY 3265660 3266150 -48247434 + L1ME2 LINE L1 19 5631 -1310 1276 142 71 0 chrY 3266150 3266403 -48247181 - L1MC2 LINE L1 -1 6343 6073 2061 210 41 111 chrY 3266410 3266610 -48246974 - MER74A LTR ERVL 0 622 410 2201 108 0 3 chrY 3266610 3266906 -48246678 + AluY SINE Alu 3 297 -14 2061 210 41 111 chrY 3266906 3267319 -48246265 - MER74A LTR ERVL -212 410 26 568 220 129 21 chrY 3267319 3267505 -48246079 - L1MC2 LINE L1 -269 6075 5870 2117 110 0 3 chrY 3267524 3267814 -48245770 + AluY SINE Alu 1 289 -22 812 288 50 11 chrY 3267814 3268193 -48245391 + L1ME2 LINE L1 5642 6035 -906 838 279 46 53 chrY 3268194 3268800 -48244784 + MLT1E3 LTR MaLR 1 624 0 364 245 102 7 chrY 3268800 3268947 -48244637 + L1ME2 LINE L1 6032 6192 -749 1993 219 28 34 chrY 3268950 3269453 -48244131 - MLT1D LTR MaLR -5 500 1 2102 267 44 21 chrY 3269453 3270199 -48243385 + L1ME2 LINE L1 6186 6948 -11 418 258 105 53 chrY 3270207 3270397 -48243187 + L1MEc LINE L1 1619 1818 -4578 490 217 101 14 chrY 3270521 3270659 -48242925 - MLT1E LTR MaLR -428 165 16 634 302 13 38 chrY 3270676 3270911 -48242673 - MLT1E-int LTR MaLR -2 1369 1141 1898 216 76 24 chrY 3270929 3271351 -48242233 + MLT2B1 LTR ERVL 1 444 -76 539 264 22 51 chrY 3271688 3271866 -48241718 - MLT1E-int LTR MaLR -507 864 692 3195 107 9 34 chrY 3272005 3272529 -48241055 - MER9 LTR ERVK 0 511 1 912 282 39 6 chrY 3272598 3272928 -48240656 - MLT1E-int LTR MaLR -768 603 263 235 269 84 25 chrY 3273064 3273183 -48240401 - MLT2F LTR ERVL 0 663 538 302 261 0 0 chrY 3273362 3273427 -48240157 - MLT1E1 LTR MaLR -412 242 178 259 263 53 0 chrY 3273474 3273550 -48240034 - MLT1E1 LTR MaLR -507 117 38 * 376 343 0 7 chrY 3273546 3273683 -48239901 - MLT2F LTR ERVL -522 141 6 628 287 93 8 chrY 3273931 3274168 -48239416 + L1ME2 LINE L1 5899 6155 -9 645 267 22 30 chrY 3274214 3274484 -48239100 + L1MEd LINE L1 975 1242 -4877 187 240 50 140 chrY 3274486 3274586 -48238998 + L2 LINE L2 3221 3311 -2 517 343 43 30 chrY 3275245 3275501 -48238083 + L1ME2 LINE L1 5386 5637 -527 763 164 0 0 chrY 3275501 3275635 -48237949 + L1PB1 LINE L1 6016 6149 -2 517 343 43 30 chrY 3275635 3275885 -48237699 + L1ME2 LINE L1 5637 5899 -265 351 331 43 61 chrY 3275928 3276303 -48237281 + L1M3d LINE L1 413 780 -5523 4043 222 99 56 chrY 3276566 3278353 -48235231 + L1M3d LINE L1 777 2544 -3838 1326 207 6 48 chrY 3278357 3278671 -48234913 + AluJo SINE Alu 12 312 0 902 269 74 0 chrY 3278696 3279020 -48234564 + L1M3d LINE L1 2552 2899 -3483 5890 106 1 2 chrY 3279026 3279850 -48233734 + L1PA13 LINE L1 15 837 -5624 5458 128 20 1 chrY 3279850 3280443 -48233141 + L1PA13 LINE L1 4899 5479 -999 207 0 0 0 chrY 3280443 3280466 -48233118 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 5458 128 20 1 chrY 3280466 3281422 -48232162 + L1PA13 LINE L1 5479 6467 -11 1069 237 13 43 chrY 3281662 3281962 -48231622 - AluJo SINE Alu -11 291 1 217 345 23 100 chrY 3282119 3282290 -48231294 - L2 LINE L2 -408 2906 2754 2188 120 3 3 chrY 3282290 3282599 -48230985 - AluSx SINE Alu -3 309 1 217 345 23 100 chrY 3282599 3282647 -48230937 - L2 LINE L2 -560 2754 2704 350 64 0 0 chrY 3282657 3282704 -48230880 + MADE1 DNA Mariner 33 79 -1 334 415 0 6 chrY 3282705 3282864 -48230720 - L2 LINE L2 -607 2707 2550 22 0 0 0 chrY 3282977 3282999 -48230585 + AT_rich Low_complexity Low_complexity 1 22 0 359 265 60 20 chrY 3283371 3283522 -48230062 + L1M3d LINE L1 2640 2796 -3586 347 293 106 49 chrY 3283597 3284284 -48229300 + L1M3d LINE L1 2921 3675 -2707 2562 20 0 7 chrY 3284284 3284608 -48228976 + AluYa5 SINE Alu 1 322 0 347 293 106 49 chrY 3284608 3284833 -48228751 + L1M3d LINE L1 3675 3886 -2496 988 172 0 0 chrY 3284910 3285067 -48228517 + FRAM SINE Alu 1 152 -24 29 0 0 0 chrY 3285068 3285097 -48228487 + AT_rich Low_complexity Low_complexity 1 29 0 373 296 87 12 chrY 3285206 3285378 -48228206 + MLT1J LTR MaLR 320 504 -7 297 294 35 0 chrY 3285413 3285498 -48228086 - HERV16 LTR ERVL -4907 89 2 575 275 143 72 chrY 3285512 3285912 -48227672 - LTR16A LTR ERVL -14 443 16 255 200 57 0 chrY 3286036 3286106 -48227478 + L1MC/D LINE L1 5368 5441 -2367 2265 149 78 7 chrY 3286171 3286593 -48226991 + LTR47A LTR ERVL 1 452 0 2046 195 47 31 chrY 3286691 3287311 -48226273 + L1M3 LINE L1 5064 5697 -486 309 279 15 22 chrY 3287921 3288057 -48225527 - L1MEd LINE L1 -5061 1058 924 1947 132 3 3 chrY 3288063 3288351 -48225233 + AluSx SINE Alu 1 288 -24 499 244 9 0 chrY 3288403 3288518 -48225066 - L1ME1 LINE L1 -20 6146 6031 14986 237 20 19 chrY 3288531 3293239 -48220345 - L1PA13 LINE L1 -847 5950 1220 2887 296 43 19 chrY 3293254 3294075 -48219509 - L1PA13 LINE L1 -5947 840 1 3353 234 25 16 chrY 3294110 3295024 -48218560 - L1 LINE L1 -1595 4551 3630 773 228 13 0 chrY 3295033 3295191 -48218393 + MLT1A1 LTR MaLR 1 160 -205 12416 133 7 11 chrY 3295191 3297235 -48216349 + L1P LINE L1 3236 5271 -875 7669 112 6 31 chrY 3297258 3298499 -48215085 - L1P LINE L1 -2733 3413 2205 1663 76 0 0 chrY 3298499 3298709 -48214875 - AluY SINE Alu -8 303 94 5478 220 3 11 chrY 3298718 3299948 -48213636 + L1P LINE L1 2674 3894 -2252 1619 186 0 24 chrY 3299952 3300247 -48213337 + AluJb SINE Alu 1 288 -24 387 158 0 10 chrY 3300275 3300365 -48213219 + L1M4 LINE L1 3869 3955 -2191 23 54 0 0 chrY 3301432 3301469 -48212115 + AT_rich Low_complexity Low_complexity 1 37 0 21 36 0 0 chrY 3301869 3301897 -48211687 + AT_rich Low_complexity Low_complexity 1 28 0 201 167 56 0 chrY 3302124 3302178 -48211406 + (TA)n Simple_repeat Simple_repeat 2 58 0 629 291 35 20 chrY 3303363 3303566 -48210018 + MLT1I LTR MaLR 1 206 -203 1174 333 10 15 chrY 3303853 3304256 -48209328 + MLT1I LTR MaLR 1 401 -8 1213 245 33 18 chrY 3304829 3305164 -48208420 + MER58B DNA MER1_type 2 341 0 3384 210 59 2 chrY 3305754 3306539 -48207045 - L1 LINE L1 -1154 6411 5583 2037 184 124 3 chrY 3306524 3307290 -48206294 + L1MB3 LINE L1 4952 5789 -523 * 715 171 11 17 chrY 3307304 3307485 -48206099 + (TA)n Simple_repeat Simple_repeat 1 180 0 1129 190 47 18 chrY 3307498 3307832 -48205752 + L1MB3 LINE L1 5776 6174 -9 22 0 0 0 chrY 3307837 3307859 -48205725 + AT_rich Low_complexity Low_complexity 1 22 0 3575 167 29 20 chrY 3307859 3308627 -48204957 + L1MA9 LINE L1 5413 6290 -22 376 344 46 0 chrY 3309030 3309179 -48204405 - MIR SINE MIR -6 256 101 263 316 84 26 chrY 3309179 3309334 -48204250 + MIR SINE MIR 1 164 -98 221 273 36 0 chrY 3310023 3310078 -48203506 + L2 LINE L2 3249 3305 -8 5356 163 18 22 chrY 3310169 3311594 -48201990 - L1 LINE L1 -3458 4107 2687 9310 106 3 1 chrY 3311635 3312983 -48200601 + L1P LINE L1 3646 4996 -1150 10135 231 84 25 chrY 3312985 3315245 -48198339 - L1 LINE L1 -4866 2699 559 7485 34 0 3 chrY 3315245 3316328 -48197256 + L1PA5 LINE L1 5074 6154 0 10135 231 84 25 chrY 3316328 3316905 -48196679 - L1 LINE L1 -7006 559 17 320 415 50 0 chrY 3317012 3317171 -48196413 + L2 LINE L2 3104 3270 -2 23 68 0 0 chrY 3317320 3317364 -48196220 + AT_rich Low_complexity Low_complexity 1 44 0 435 128 3 12 chrY 3317642 3317727 -48195857 - L1PA5 LINE L1 -253 5901 5820 2596 51 0 0 chrY 3317933 3318244 -48195340 + AluY SINE Alu 1 311 0 294 29 0 0 chrY 3319181 3319216 -48194368 + (CA)n Simple_repeat Simple_repeat 1 35 0 464 362 40 25 chrY 3319275 3319514 -48194070 + MIR SINE MIR 10 250 -12 258 250 0 0 chrY 3319520 3319576 -48194008 + (ATG)n Simple_repeat Simple_repeat 2 57 0 192 77 0 0 chrY 3319900 3319926 -48193658 + (CA)n Simple_repeat Simple_repeat 1 26 0 1424 192 59 50 chrY 3319928 3320267 -48193317 - MER2 DNA MER2_type -2 342 1 349 276 7 22 chrY 3321033 3321155 -48192429 + MLT1H LTR MaLR 1 162 -387 4457 185 41 4 chrY 3321256 3322260 -48191324 + L1MB8 LINE L1 5124 6178 0 336 283 93 73 chrY 3322320 3322567 -48191017 + L1ME LINE L1 4535 4786 -1360 22 0 0 0 chrY 3323036 3323058 -48190526 + AT_rich Low_complexity Low_complexity 1 22 0 23 33 0 0 chrY 3323577 3323607 -48189977 + AT_rich Low_complexity Low_complexity 1 30 0 397 283 0 0 chrY 3323762 3323861 -48189723 + L1ME LINE L1 5638 5736 -434 37 62 0 0 chrY 3323994 3324059 -48189525 + AT_rich Low_complexity Low_complexity 1 65 0 188 260 77 10 chrY 3324068 3324172 -48189412 - L2 LINE L2 -150 3163 3053 1091 213 30 22 chrY 3324349 3324617 -48188967 + LTR43 LTR ERV1 177 446 -156 1033 278 108 32 chrY 3324710 3325171 -48188413 - L2 LINE L2 -417 2897 2402 1596 253 26 30 chrY 3325310 3325817 -48187767 - MLT1D LTR MaLR 0 505 1 319 296 175 25 chrY 3326068 3326162 -48187422 - L1ME4a LINE L1 -247 5874 5795 2123 125 47 33 chrY 3326162 3326521 -48187063 - THE1B LTR MaLR 0 364 1 319 296 175 25 chrY 3326521 3326666 -48186918 - L1ME4a LINE L1 -326 5795 5599 315 283 71 0 chrY 3327067 3327166 -48186418 - L1ME4a LINE L1 -2379 5429 5324 800 269 40 31 chrY 3327789 3328016 -48185568 + MIR SINE MIR 1 229 -33 5898 146 13 15 chrY 3328039 3329070 -48184514 + L1MC1 LINE L1 5298 6327 -6 941 130 10 47 chrY 3329062 3329254 -48184330 - L1PA15-16 LINE L1 -4786 2063 1879 * 4947 174 41 22 chrY 3329256 3330307 -48183277 + L1PA16 LINE L1 4438 5528 -638 1944 131 0 17 chrY 3330307 3330598 -48182986 + AluSx SINE Alu 10 295 -17 4947 174 41 22 chrY 3330598 3331244 -48182340 + L1PA16 LINE L1 5528 6160 -6 214 261 0 0 chrY 3333260 3333306 -48180278 - L2 LINE L2 -12 3301 3256 2388 194 58 79 chrY 3333475 3334180 -48179404 + LTR8 LTR ERV1 2 691 0 2223 151 5 13 chrY 3334183 3334561 -48179023 - THE1C LTR MaLR 0 375 1 329 236 57 89 chrY 3334636 3334793 -48178791 + MLT1K LTR MaLR 316 467 -121 23 33 0 0 chrY 3334822 3334852 -48178732 + AT_rich Low_complexity Low_complexity 1 30 0 273 315 79 39 chrY 3335315 3335442 -48178142 + L2 LINE L2 3141 3272 0 238 316 35 57 chrY 3335794 3336022 -48177562 - L1ME LINE L1 -203 5918 5696 319 348 92 27 chrY 3336115 3336299 -48177285 - L1ME LINE L1 -2239 5569 5374 892 224 73 29 chrY 3336498 3336743 -48176841 + LTR16A1 LTR ERVL 198 453 -4 217 384 20 0 chrY 3337053 3337152 -48176432 + L2 LINE L2 2376 2476 -838 1517 174 169 21 chrY 3337159 3337532 -48176052 - MSTA LTR MaLR 0 428 1 8846 201 15 1 chrY 3337532 3339143 -48174441 - MSTA-int LTR MaLR 0 1651 18 1955 148 137 5 chrY 3339176 3339549 -48174035 - MSTA LTR MaLR -6 422 1 4275 128 35 4 chrY 3339573 3340294 -48173290 - L1MA2 LINE L1 -296 7427 6685 11976 201 21 39 chrY 3340329 3343305 -48170279 - L1MA2 LINE L1 -874 6691 3769 811 162 0 15 chrY 3343316 3343452 -48170132 - AluSq/x SINE Alu -179 134 1 13163 180 65 48 chrY 3343453 3344242 -48169342 - L1MA2 LINE L1 -3783 3782 3008 2481 75 10 0 chrY 3344242 3344550 -48169034 - AluY SINE Alu 0 311 1 13163 180 65 48 chrY 3344550 3345276 -48168308 - L1MA2 LINE L1 -4557 3008 2296 2277 97 3 0 chrY 3345276 3345575 -48168009 + AluSp SINE Alu 2 301 -12 13163 180 65 48 chrY 3345575 3347103 -48166481 - L1MA2 LINE L1 -5269 2296 688 6311 205 47 60 chrY 3347094 3348461 -48165123 + L1MC3 LINE L1 5195 5039 -1107 * 225 87 0 0 chrY 3348461 3348507 -48165077 + LTR66 LTR ERVL 394 439 -171 6311 205 47 60 chrY 3348507 3348869 -48164715 + L1MC3 LINE L1 5038 5403 -743 251 136 17 51 chrY 3348871 3348930 -48164654 + MLT1F1 LTR MaLR 46 102 -465 1763 183 109 10 chrY 3348936 3349341 -48164243 + L1MC3 LINE L1 7188 7632 -153 823 143 7 0 chrY 3349392 3349532 -48164052 + L1MA2 LINE L1 6111 6251 -53 315 0 0 0 chrY 3349532 3349567 -48164017 + (TC)n Simple_repeat Simple_repeat 2 36 0 * 341 53 0 53 chrY 3349566 3349623 -48163961 + (TA)n Simple_repeat Simple_repeat 1 54 0 24 0 0 0 chrY 3349639 3349663 -48163921 + AT_rich Low_complexity Low_complexity 1 24 0 1413 215 22 0 chrY 3349682 3349956 -48163628 + AluJo SINE Alu 3 282 -30 491 0 17 0 chrY 3349956 3350015 -48163569 + (CA)n Simple_repeat Simple_repeat 1 60 0 655 273 57 54 chrY 3351075 3351408 -48162176 + LTR52 LTR ERVL 3 336 -85 349 263 75 25 chrY 3351466 3351626 -48161958 + MER112 DNA MER1_type 68 235 -25 237 309 53 21 chrY 3351769 3351863 -48161721 - MIR3 SINE MIR -102 106 10 1236 277 103 14 chrY 3354545 3354982 -48158602 + MLT1H LTR MaLR 74 549 0 559 285 62 26 chrY 3355074 3355141 -48158443 + MIR SINE MIR 49 112 -150 1247 115 150 0 chrY 3355141 3355341 -48158243 + MER30 DNA MER1_type 1 230 0 559 285 62 26 chrY 3355341 3355466 -48158118 + MIR SINE MIR 112 248 -14 29 84 0 0 chrY 3356007 3356078 -48157506 + AT_rich Low_complexity Low_complexity 1 71 0 2618 7 0 0 chrY 3356319 3356609 -48156975 + AluYb8 SINE Alu 1 317 0 244 0 0 0 chrY 3356609 3356636 -48156948 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 1029 314 73 15 chrY 3356774 3357185 -48156399 - LTR16A LTR ERVL -13 437 3 579 378 91 9 chrY 3357237 3357690 -48155894 - L2 LINE L2 -37 3276 2790 2524 68 0 0 chrY 3357786 3358097 -48155487 - AluY SINE Alu 0 311 1 2419 236 36 11 chrY 3358205 3358871 -48154713 + L1MD1 LINE L1 3593 4275 -1871 282 317 78 14 chrY 3358876 3359018 -48154566 + L1MD1 LINE L1 4201 4351 -1795 2313 215 24 15 chrY 3359031 3359625 -48153959 + L1MD1 LINE L1 5167 5753 -606 4300 94 10 0 chrY 3359642 3360258 -48153326 - L1PA13 LINE L1 0 6163 5542 3680 73 6 4 chrY 3360259 3360750 -48152834 - L1PA11 LINE L1 -55 6119 5628 2035 181 25 85 chrY 3360782 3361098 -48152486 + L1MD1 LINE L1 5745 6079 -163 2429 75 10 0 chrY 3361098 3361406 -48152178 + AluY SINE Alu 1 311 0 2350 73 0 19 chrY 3361409 3361722 -48151862 + AluY SINE Alu 1 307 -4 2035 181 25 85 chrY 3361722 3361930 -48151654 + L1MD1 LINE L1 6081 6241 -1 220 405 12 0 chrY 3363060 3363144 -48150440 - MIR SINE MIR -161 101 17 300 278 42 52 chrY 3363210 3363401 -48150183 + L1MC4a LINE L1 5753 5941 -1867 22 0 0 0 chrY 3364027 3364049 -48149535 + AT_rich Low_complexity Low_complexity 1 22 0 7885 230 45 31 chrY 3365136 3365930 -48147654 - L1MB3 LINE L1 -2 6181 5400 2239 75 3 0 chrY 3365930 3366223 -48147361 - AluY SINE Alu -17 294 1 7885 230 45 31 chrY 3366223 3367529 -48146055 - L1MB3 LINE L1 -783 5400 4114 1763 130 27 3 chrY 3367529 3367828 -48145756 - L1PA13 LINE L1 -1 6162 5857 7885 230 45 31 chrY 3367828 3369412 -48144172 - L1MB3 LINE L1 -2069 4114 2442 225 0 0 0 chrY 3369413 3369438 -48144146 + (CA)n Simple_repeat Simple_repeat 2 26 0 1361 187 65 0 chrY 3369445 3369760 -48143824 - L1PB4 LINE L1 -4 6152 5478 * 1621 238 15 11 chrY 3369759 3370226 -48143358 + L1MA7 LINE L1 4313 4781 -1365 3479 159 63 7 chrY 3370229 3370922 -48142662 + L1MA7 LINE L1 5557 6288 -3 234 244 23 12 chrY 3371018 3371104 -48142480 + (TA)n Simple_repeat Simple_repeat 2 88 0 301 390 13 0 chrY 3371577 3371731 -48141853 - L1ME2 LINE L1 -176 5988 5833 448 292 39 49 chrY 3372675 3372959 -48140625 - L1ME2 LINE L1 -2229 5579 5299 2314 90 0 6 chrY 3373020 3373331 -48140253 - AluSc SINE Alu 0 309 1 2197 209 19 86 chrY 3373433 3374025 -48139559 + MLT2B3 LTR ERVL 1 552 -2 712 289 82 16 chrY 3374109 3374424 -48139160 + L1MC5 LINE L1 5602 5937 -1871 360 0 0 0 chrY 3374433 3374473 -48139111 + (TA)n Simple_repeat Simple_repeat 2 41 0 7934 96 7 1 chrY 3374515 3376445 -48137139 + L1PA7 LINE L1 4204 6150 -4 22 0 0 0 chrY 3376445 3376467 -48137117 + AT_rich Low_complexity Low_complexity 1 22 0 1974 231 97 101 chrY 3376885 3378181 -48135403 + L1MC5 LINE L1 6635 7924 -37 32 57 0 0 chrY 3378236 3378289 -48135295 + AT_rich Low_complexity Low_complexity 1 53 0 3089 121 12 14 chrY 3378316 3378827 -48134757 + L1MA2 LINE L1 5795 6304 0 250 387 0 0 chrY 3378895 3379019 -48134565 + L1MEc LINE L1 296 419 -5977 294 310 41 46 chrY 3379145 3379342 -48134242 + L1MEc LINE L1 492 687 -5709 495 113 0 0 chrY 3379343 3379444 -48134140 + AluSg/x SINE Alu 213 313 0 535 278 107 56 chrY 3379445 3379823 -48133761 + L1MEc LINE L1 680 1086 -5310 180 0 0 0 chrY 3379823 3379843 -48133741 + (CAAAA)n Simple_repeat Simple_repeat 2 21 0 535 278 107 56 chrY 3379843 3379914 -48133670 + L1MEc LINE L1 1086 1152 -5244 356 207 0 0 chrY 3379937 3380019 -48133565 + L1MEc LINE L1 2907 2988 -3227 227 31 31 0 chrY 3380392 3380424 -48133160 + (TTTTG)n Simple_repeat Simple_repeat 4 36 0 1957 114 0 4 chrY 3380689 3380961 -48132623 + AluSc SINE Alu 35 305 -4 307 358 43 21 chrY 3381173 3381360 -48132224 - MIR SINE MIR -52 210 20 27 29 0 0 chrY 3381667 3381701 -48131883 + AT_rich Low_complexity Low_complexity 1 34 0 559 308 107 8 chrY 3381873 3382107 -48131477 - MIR SINE MIR -4 258 2 1878 256 99 23 chrY 3382401 3382956 -48130628 - MLT2F LTR ERVL -66 597 1 1869 128 25 4 chrY 3385263 3385544 -48128040 - AluSg SINE Alu -15 295 9 231 218 126 58 chrY 3386001 3386072 -48127512 - MLT1J LTR MaLR -44 467 388 5235 95 70 13 chrY 3386072 3386853 -48126731 - LTR12 LTR ERV1 0 826 1 231 218 126 58 chrY 3386853 3386868 -48126716 - MLT1J LTR MaLR -123 388 375 2062 151 125 8 chrY 3387217 3387600 -48125984 + MSTA LTR MaLR 1 428 0 374 262 89 46 chrY 3387848 3388303 -48125281 + L1ME LINE L1 5295 5774 -396 54 49 0 0 chrY 3388303 3388385 -48125199 + AT_rich Low_complexity Low_complexity 1 82 0 1468 272 29 29 chrY 3388444 3388999 -48124585 - L1M4 LINE L1 -1573 4809 4255 207 0 0 0 chrY 3389007 3389030 -48124554 + (TC)n Simple_repeat Simple_repeat 2 24 0 183 129 0 0 chrY 3389074 3389105 -48124479 + (TA)n Simple_repeat Simple_repeat 2 32 0 210 37 0 0 chrY 3389106 3389133 -48124451 + (TG)n Simple_repeat Simple_repeat 2 28 0 425 223 79 46 chrY 3389161 3389390 -48124194 - L1M4 LINE L1 -2162 4220 3989 186 43 0 0 chrY 3389390 3389413 -48124171 + (TA)n Simple_repeat Simple_repeat 1 23 0 959 277 64 4 chrY 3389467 3389954 -48123630 - L1M4 LINE L1 -2685 3697 3182 255 289 0 0 chrY 3389951 3390034 -48123550 + L1M4 LINE L1 2134 2216 -3930 * 4681 167 13 16 chrY 3390050 3391344 -48122240 + L1PA16 LINE L1 4876 6165 -1 740 205 12 6 chrY 3391378 3391539 -48122045 + AluJb SINE Alu 1 162 -150 303 250 22 0 chrY 3391713 3391805 -48121779 - L1M4 LINE L1 -4543 1841 1748 2133 158 14 19 chrY 3391810 3392176 -48121408 + THE1B LTR MaLR 1 364 0 10124 100 13 0 chrY 3392176 3393678 -48119906 + THE1B-int LTR MaLR 1 1580 0 2055 168 19 19 chrY 3393678 3394042 -48119542 + THE1B LTR MaLR 1 364 0 789 255 105 22 chrY 3394044 3394358 -48119226 - L1M4 LINE L1 -4639 1745 1406 * 2410 200 29 53 chrY 3394356 3394884 -48118700 + L1MB7 LINE L1 5568 6080 -104 571 76 13 0 chrY 3394884 3394963 -48118621 - MADE1 DNA Mariner 0 80 1 2410 200 29 53 chrY 3394963 3395058 -48118526 + L1MB7 LINE L1 6080 6176 -8 1800 182 5 32 chrY 3395973 3396346 -48117238 + MLT1A1 LTR MaLR 3 365 0 202 279 59 0 chrY 3396872 3396940 -48116644 + L2 LINE L2 2288 2359 -955 11090 170 13 7 chrY 3396972 3398923 -48114661 + Tigger1 DNA MER2_type 1 1963 -455 216 0 0 0 chrY 3398923 3398947 -48114637 + (T)n Simple_repeat Simple_repeat 1 24 0 8481 207 14 19 chrY 3398960 3399617 -48113967 - L1PA13 LINE L1 -762 6035 5376 1940 204 117 65 chrY 3399617 3400402 -48113182 + LTR1B LTR ERV1 1 826 0 8481 207 14 19 chrY 3400402 3401021 -48112563 - L1PA13 LINE L1 -1421 5376 4756 2016 178 51 10 chrY 3401021 3401432 -48112152 + MSTA LTR MaLR 1 428 0 8481 207 14 19 chrY 3401432 3402085 -48111499 - L1PA13 LINE L1 -2041 4756 4114 1895 144 64 25 chrY 3402085 3402446 -48111138 - THE1C LTR MaLR 0 375 1 9166 134 39 42 chrY 3402451 3404029 -48109555 - THE1C-int LTR MaLR -6 1574 1 1900 143 88 20 chrY 3404029 3404380 -48109204 - THE1C LTR MaLR 0 375 1 1517 231 26 3 chrY 3404380 3404766 -48108818 - L1PA13 LINE L1 -2679 4118 3724 1952 201 61 25 chrY 3404766 3405210 -48108374 - LTR2B LTR ERV1 0 490 31 6444 229 31 5 chrY 3405228 3407702 -48105882 - L1PA13 LINE L1 -3070 3727 1174 3501 198 3 0 chrY 3407707 3408282 -48105302 - L1PA13 LINE L1 -6209 578 2 2113 153 55 3 chrY 3408293 3408678 -48104906 + Tigger1 DNA MER2_type 1951 2355 -63 469 339 97 63 chrY 3408717 3408934 -48104650 + L2 LINE L2 2394 2602 -711 2508 71 0 0 chrY 3408934 3409245 -48104339 - AluY SINE Alu 0 311 1 469 339 97 63 chrY 3409245 3409912 -48103672 + L2 LINE L2 2602 3313 0 778 253 6 0 chrY 3410098 3410280 -48103304 + MER3 DNA MER1_type 1 183 -26 2559 173 47 49 chrY 3410949 3411561 -48102023 + LTR36 LTR ERV1 1 611 0 180 0 0 0 chrY 3411687 3411707 -48101877 + (A)n Simple_repeat Simple_repeat 1 20 0 223 298 83 50 chrY 3412165 3412318 -48101266 - MIR SINE MIR -66 142 19 780 323 23 19 chrY 3414153 3414413 -48099171 + MIR SINE MIR 2 262 0 4552 279 102 33 chrY 3414838 3418861 -48094723 + L1PA12 LINE L1 9 4404 -3180 2632 224 32 18 chrY 3418857 3419579 -48094005 + L1 LINE L1 5484 6215 -1369 * 2645 88 98 5 chrY 3419579 3419989 -48093595 + LTR7 LTR ERV1 1 448 -2 19696 104 20 12 chrY 3419991 3422955 -48090629 + HERVH LTR ERV1 1 2987 -4726 808 157 27 0 chrY 3422949 3423096 -48090488 + HERVH LTR ERV1 3140 3290 -4423 * 3400 103 4 4 chrY 3423095 3423589 -48089995 + HERVH LTR ERV1 3500 3993 -3720 4316 145 0 3 chrY 3423591 3424255 -48089329 + HERVH LTR ERV1 4488 5149 -2564 1340 103 25 5 chrY 3424270 3424474 -48089110 + HERVH LTR ERV1 5612 5819 -1894 * 2312 106 53 13 chrY 3424472 3424849 -48088735 + HERVH LTR ERV1 7322 7713 0 2623 86 100 5 chrY 3424849 3425258 -48088326 + LTR7 LTR ERV1 1 448 -2 1980 219 60 14 chrY 3425261 3425937 -48087647 + L1PA16 LINE L1 4774 5475 -691 25426 35 1 0 chrY 3425964 3429865 -48083719 - L1PA3 LINE L1 0 6155 2268 10223 61 11 8 chrY 3429866 3431217 -48082367 + L1P LINE L1 676 2030 -4116 3435 157 64 24 chrY 3431219 3431894 -48081690 + L1PA16 LINE L1 5464 6165 -1 24 0 0 0 chrY 3431911 3431935 -48081649 + AT_rich Low_complexity Low_complexity 1 24 0 264 330 28 9 chrY 3432070 3432179 -48081405 - MER20B DNA MER1_type -613 170 60 457 281 47 18 chrY 3432186 3432357 -48081227 + MER69A DNA AcHobo 2 177 0 255 31 0 0 chrY 3433003 3433035 -48080549 + (T)n Simple_repeat Simple_repeat 1 32 0 1626 146 168 76 chrY 3433804 3434174 -48079410 - MER4A LTR ERV1 0 664 261 303 130 0 0 chrY 3434181 3434227 -48079357 - MER4A LTR ERV1 -573 91 46 532 206 57 86 chrY 3434300 3434475 -48079109 - MER58C DNA MER1_type -2 213 44 268 348 0 0 chrY 3434848 3434940 -48078644 - LTR16B LTR ERVL -140 324 233 420 355 14 0 chrY 3434978 3435119 -48078465 - LTR16B LTR ERVL -318 146 4 26 30 0 0 chrY 3435246 3435279 -48078305 + AT_rich Low_complexity Low_complexity 1 33 0 1689 93 0 16 chrY 3435279 3435526 -48078058 - L1MA1 LINE L1 0 6302 6060 2989 191 67 19 chrY 3435541 3435582 -48078002 - L1 LINE L1 -2392 4456 4418 2097 112 20 0 chrY 3435582 3435877 -48077707 - AluSg SINE Alu -9 301 1 2989 191 67 19 chrY 3435877 3436661 -48076923 - L1 LINE L1 -2430 4418 3592 1143 184 29 0 chrY 3436663 3436860 -48076724 - MER41C LTR ERV1 0 554 349 378 61 0 0 chrY 3436860 3436909 -48076675 + (TG)n Simple_repeat Simple_repeat 2 50 0 240 301 0 0 chrY 3436922 3437005 -48076579 - L1MC4 LINE L1 -1346 6696 6614 251 250 0 22 chrY 3437005 3437097 -48076487 - L1MC4 LINE L1 -1339 6703 6614 189 147 0 0 chrY 3437097 3437131 -48076453 + (TATATG)n Simple_repeat Simple_repeat 2 35 0 316 269 0 43 chrY 3437134 3437227 -48076357 + L1MC4 LINE L1 6615 6703 -1339 357 289 0 0 chrY 3437229 3437319 -48076265 - L1MC4 LINE L1 -1339 6703 6614 345 300 0 0 chrY 3437243 3437333 -48076251 + L1MC4 LINE L1 6614 6703 -1339 * 1960 130 47 3 chrY 3437353 3437653 -48075931 - MER41C LTR ERV1 -241 313 1 2919 259 25 9 chrY 3437653 3439146 -48074438 - L1 LINE L1 -3255 3593 2077 1234 223 68 7 chrY 3439720 3439998 -48073586 - AluJo SINE Alu -7 295 1 2429 253 53 14 chrY 3440231 3441286 -48072298 - L1M4c LINE L1 -2299 4658 3563 1084 289 45 40 chrY 3441401 3442147 -48071437 - L1M4c LINE L1 -4391 2566 1759 1192 42 0 0 chrY 3442158 3442302 -48071282 - L1PA3 LINE L1 -3 6152 6009 593 29 0 0 chrY 3442302 3442372 -48071212 + L1P1 LINE L1 5701 5770 -385 316 181 183 17 chrY 3442401 3442556 -48071028 - L1M4c LINE L1 -5107 1748 1563 2512 162 24 2 chrY 3442566 3442985 -48070599 + MSTA LTR MaLR 1 428 0 5640 220 18 11 chrY 3442985 3444138 -48069446 + MSTA-int LTR MaLR 1 1161 -490 1845 153 23 3 chrY 3444138 3444439 -48069145 - MSTA LTR MaLR -119 309 3 708 152 32 0 chrY 3444441 3444566 -48069018 - MSTA-int LTR MaLR 0 1651 1523 1614 120 0 0 chrY 3444566 3444807 -48068777 + L1PA13 LINE L1 5915 6155 -8 2186 281 96 24 chrY 3444811 3445653 -48067931 - L1M4c LINE L1 -5888 971 69 363 324 60 0 chrY 3445721 3445903 -48067681 + LTR67 LTR ERVL 363 555 -2 5136 230 20 19 chrY 3446570 3447611 -48065973 - L1MC1 LINE L1 -6 6607 5568 4784 44 5 2 chrY 3447611 3448200 -48065384 - LTR10C LTR ERV1 0 591 1 5136 230 20 19 chrY 3448200 3449607 -48063977 - L1MC1 LINE L1 -1045 5568 4143 8957 210 84 42 chrY 3449616 3450408 -48063176 - L1MC1 LINE L1 -3709 2717 1960 1847 230 24 7 chrY 3450408 3450825 -48062759 - MSTB LTR MaLR 0 426 3 8957 210 84 42 chrY 3450825 3452608 -48060976 - L1MC1 LINE L1 -4466 1960 17 21 36 0 0 chrY 3453050 3453078 -48060506 + AT_rich Low_complexity Low_complexity 1 28 0 198 0 0 0 chrY 3453113 3453135 -48060449 + (A)n Simple_repeat Simple_repeat 1 22 0 2227 121 0 7 chrY 3454044 3454349 -48059235 + AluSq SINE Alu 1 303 -10 316 232 36 27 chrY 3454933 3455045 -48058539 - L2 LINE L2 -518 2796 2684 473 257 57 54 chrY 3456055 3456294 -48057290 + L1PBb LINE L1 826 1063 -5140 2165 107 16 26 chrY 3456294 3456602 -48056982 - AluSp SINE Alu -8 305 1 473 257 57 54 chrY 3456602 3456807 -48056777 + L1PBb LINE L1 1063 1364 -4839 6846 197 78 23 chrY 3456808 3457705 -48055879 + L1P LINE L1 55 901 -5245 7353 33 0 0 chrY 3457705 3458587 -48054997 + L1PA4 LINE L1 5271 6152 -3 6846 197 78 23 chrY 3458587 3460034 -48053550 + L1P LINE L1 901 2549 -3597 22 0 0 0 chrY 3460453 3460475 -48053109 + AT_rich Low_complexity Low_complexity 1 22 0 225 0 0 0 chrY 3460695 3460720 -48052864 + (TG)n Simple_repeat Simple_repeat 2 26 0 4553 245 19 7 chrY 3460897 3462504 -48051080 + L1MA2 LINE L1 1 1730 -5835 * 5482 131 1 1 chrY 3462497 3463353 -48050231 + L1PA13 LINE L1 5307 6162 -1 6878 180 39 17 chrY 3463391 3464833 -48048751 + L1MA2 LINE L1 1716 3189 -4376 429 233 193 7 chrY 3464911 3465061 -48048523 - MER2 DNA MER2_type 0 345 168 281 193 0 18 chrY 3465115 3465172 -48048412 + MLT1G1 LTR MaLR 7 62 -533 5191 31 3 0 chrY 3465184 3465798 -48047786 - L1PA4 LINE L1 0 6155 5540 13543 180 25 11 chrY 3465798 3470279 -48043305 + L1MA2 LINE L1 3177 7723 0 227 86 0 0 chrY 3470557 3470592 -48042992 + L1M2 LINE L1 5767 5801 -490 275 313 78 43 chrY 3470603 3470718 -48042866 + MIR3 SINE MIR 46 164 -44 1950 145 13 0 chrY 3471137 3471441 -48042143 + AluSq SINE Alu 1 308 -5 2117 108 28 0 chrY 3471594 3471881 -48041703 + AluSq SINE Alu 1 295 -18 716 224 29 6 chrY 3472839 3473013 -48040571 + MER5B DNA MER1_type 1 178 0 851 250 64 74 chrY 3473170 3473466 -48040118 + L2 LINE L2 3019 3311 -2 2448 127 6 3 chrY 3474099 3474462 -48039122 - THE1B LTR MaLR 0 364 1 9621 138 16 31 chrY 3474462 3476065 -48037519 - THE1B-int LTR MaLR 0 1580 1 411 168 2 13 chrY 3476065 3476153 -48037431 - MSTA LTR MaLR 0 428 288 2065 177 58 3 chrY 3476578 3477011 -48036573 + LTR49 LTR ERV1 1 491 -131 2614 170 40 57 chrY 3477013 3477436 -48036148 + LTR29 LTR ERV1 1 430 -223 1571 177 3 14 chrY 3477436 3477781 -48035803 - AluSx SINE Alu 0 344 3 2614 170 40 57 chrY 3477781 3477794 -48035790 + LTR29 LTR ERV1 430 442 -211 2146 136 3 12 chrY 3477794 3478140 -48035444 - L1PB3 LINE L1 -1 6153 5811 2614 170 40 57 chrY 3478140 3478340 -48035244 + LTR29 LTR ERV1 442 648 -5 990 172 47 23 chrY 3478347 3478654 -48034930 + LTR29-int LTR ERV1 1 351 -5980 12808 204 41 15 chrY 3478659 3481160 -48032424 - L1M LINE L1 -743 5403 2814 2521 124 3 0 chrY 3481160 3481523 -48032061 - THE1B LTR MaLR 0 364 1 12808 204 41 15 chrY 3481523 3482166 -48031418 - L1M LINE L1 -3332 2814 2189 1905 150 137 8 chrY 3482167 3482546 -48031038 + MSTA LTR MaLR 1 428 0 1602 161 20 10 chrY 3482549 3482841 -48030743 + MSTA-int LTR MaLR 4 298 -1282 1388 174 0 23 chrY 3482834 3483093 -48030491 + MSTA-int LTR MaLR 631 883 -697 * 447 208 20 10 chrY 3483094 3483195 -48030389 + MSTA-int LTR MaLR 1541 1642 -9 330 155 0 0 chrY 3483218 3483276 -48030308 + MSTA LTR MaLR 371 428 0 16585 203 53 11 chrY 3483276 3486731 -48026853 - L1M1 LINE L1 -3954 3611 12 11940 180 55 49 chrY 3486747 3487012 -48026572 + LTR49-int LTR ERV1 3259 3521 -2810 396 0 0 0 chrY 3487012 3487056 -48026528 + (TG)n Simple_repeat Simple_repeat 1 44 0 261 53 0 0 chrY 3487056 3487094 -48026490 - L1PB3 LINE L1 -34 6120 6083 11940 180 55 49 chrY 3487094 3489842 -48023742 + LTR49-int LTR ERV1 3520 6327 -4 3034 154 47 24 chrY 3489849 3490422 -48023162 + LTR49 LTR ERV1 3 588 -7 2171 181 26 12 chrY 3490426 3490841 -48022743 - MSTA LTR MaLR -7 421 1 1836 258 50 47 chrY 3491137 3492033 -48021551 + L1MC5 LINE L1 6632 7530 -431 282 288 22 58 chrY 3492126 3492265 -48021319 + L1ME3A LINE L1 5967 6100 -70 622 274 43 11 chrY 3492277 3492463 -48021121 + L1ME3A LINE L1 5979 6170 0 1790 167 123 26 chrY 3492776 3493166 -48020418 + MSTA LTR MaLR 1 428 0 1790 76 8 19 chrY 3493193 3493456 -48020128 + MSTA-int LTR MaLR 1315 1574 -6 1866 165 134 11 chrY 3493462 3493843 -48019741 + MSTA LTR MaLR 1 428 0 676 310 41 20 chrY 3495648 3495893 -48017691 + MIR SINE MIR 3 252 -10 541 277 48 12 chrY 3496532 3496698 -48016886 + MIR SINE MIR 91 262 0 532 239 75 99 chrY 3497560 3497932 -48015652 - LTR24B LTR ERV1 -7 569 207 11106 239 34 28 chrY 3498165 3501254 -48012330 - L1PA16 LINE L1 -8 6809 3739 928 92 0 0 chrY 3501254 3501384 -48012200 - L1PB1 LINE L1 -6 6145 6016 11106 239 34 28 chrY 3501384 3501620 -48011964 - L1PA16 LINE L1 -3078 3739 3506 180 0 0 0 chrY 3501620 3501640 -48011944 + (TA)n Simple_repeat Simple_repeat 2 21 0 11106 239 34 28 chrY 3501640 3502361 -48011223 - L1PA16 LINE L1 -3311 3506 2791 1963 118 4 0 chrY 3502361 3502633 -48010951 + AluSq SINE Alu 34 306 -7 11106 239 34 28 chrY 3502633 3503487 -48010097 - L1PA16 LINE L1 -4026 2791 1867 1794 219 57 7 chrY 3503487 3503893 -48009691 - MSTB LTR MaLR 0 426 1 7251 226 12 40 chrY 3503893 3505585 -48007999 - MSTB-int LTR MaLR 0 1651 7 1877 179 23 89 chrY 3505606 3505853 -48007731 - MSTB LTR MaLR -15 411 204 2611 93 33 15 chrY 3505853 3506250 -48007334 - L1MA1 LINE L1 -9 6293 5890 1877 179 23 89 chrY 3506250 3506442 -48007142 - MSTB LTR MaLR -222 204 1 1090 246 50 169 chrY 3506442 3506845 -48006739 - L1PA16 LINE L1 -4935 1852 1500 340 321 9 9 chrY 3507551 3507660 -48005924 - MER110-int LTR ERV1 -783 6339 6231 22 0 0 0 chrY 3508761 3508783 -48004801 + AT_rich Low_complexity Low_complexity 1 22 0 276 329 66 48 chrY 3509147 3509375 -48004209 - MER110-int LTR ERV1 -2274 2373 2142 186 103 0 0 chrY 3509799 3509828 -48003756 + (TTTG)n Simple_repeat Simple_repeat 2 30 0 281 336 24 24 chrY 3509945 3510153 -48003431 - MER110-int LTR ERV1 -3797 4938 4731 259 320 63 45 chrY 3510659 3510928 -48002656 - MER110-int LTR ERV1 -3640 3482 3209 419 336 41 0 chrY 3511194 3511340 -48002244 - MER110-int LTR ERV1 -4145 502 351 585 116 0 0 chrY 3511484 3511570 -48002014 + L1PA15 LINE L1 5513 5598 -568 5250 156 32 37 chrY 3511620 3512362 -48001222 + L1PA16 LINE L1 4576 5320 -846 1952 168 17 25 chrY 3512362 3512720 -48000864 + L1PA15 LINE L1 5811 6165 0 5250 156 32 37 chrY 3512720 3513569 -48000015 + L1PA16 LINE L1 5320 6166 0 23 0 0 0 chrY 3514181 3514204 -47999380 + AT_rich Low_complexity Low_complexity 1 23 0 262 111 0 0 chrY 3514936 3514972 -47998612 + L1 LINE L1 4882 4917 -1229 356 191 152 19 chrY 3514973 3515078 -47998506 - L1 LINE L1 -1265 4881 4763 792 248 124 0 chrY 3515416 3515618 -47997966 - AluJb SINE Alu -30 282 56 2190 108 0 10 chrY 3518099 3518405 -47995179 + AluY SINE Alu 1 303 -8 1189 244 3 7 chrY 3519668 3519951 -47993633 + AluJo SINE Alu 8 289 -23 1891 160 3 0 chrY 3519963 3520251 -47993333 + AluSx SINE Alu 6 294 -18 21 57 0 0 chrY 3521876 3521911 -47991673 + AT_rich Low_complexity Low_complexity 1 35 0 1511 177 54 0 chrY 3521964 3522241 -47991343 + AluSg SINE Alu 1 292 -18 396 82 0 0 chrY 3529388 3529449 -47984135 + (TG)n Simple_repeat Simple_repeat 2 62 0 235 188 0 47 chrY 3531734 3531798 -47981786 + CT-rich Low_complexity Low_complexity 1 61 0 794 257 27 54 chrY 3532108 3532404 -47981180 - AluJb SINE Alu -12 300 13 302 277 0 43 chrY 3532564 3532658 -47980926 + L1MC4 LINE L1 6614 6703 -1339 351 221 0 0 chrY 3532658 3532744 -47980840 + (TA)n Simple_repeat Simple_repeat 2 87 0 2170 260 55 57 chrY 3532898 3534618 -47978966 - L1MA8 LINE L1 -23 6268 4559 222 253 48 103 chrY 3538038 3538139 -47975445 + L2 LINE L2 2321 2413 -901 1576 207 3 7 chrY 3538139 3538444 -47975140 + AluSx SINE Alu 1 304 -8 222 253 48 103 chrY 3538444 3538488 -47975096 + L2 LINE L2 2413 2458 -856 1457 156 59 42 chrY 3538489 3538796 -47974788 + AluSx SINE Alu 1 312 0 2353 130 6 0 chrY 3538902 3539255 -47974329 - THE1A LTR MaLR 0 355 1 352 193 26 26 chrY 3540023 3540137 -47973447 + (TA)n Simple_repeat Simple_repeat 1 114 0 443 329 159 13 chrY 3540151 3540622 -47972962 - L1M4 LINE L1 -2743 3639 3100 476 195 12 0 chrY 3540698 3540780 -47972804 + AluSg/x SINE Alu 190 272 -38 288 0 0 0 chrY 3540787 3540819 -47972765 + (CAAAA)n Simple_repeat Simple_repeat 1 32 0 431 215 8 46 chrY 3542373 3542477 -47971107 + AluSg/x SINE Alu 185 285 -27 327 25 0 0 chrY 3542477 3542517 -47971067 + (CA)n Simple_repeat Simple_repeat 2 41 0 431 215 8 46 chrY 3542517 3542542 -47971042 + AluSg/x SINE Alu 285 309 -3 348 24 0 0 chrY 3542584 3542625 -47970959 + (CA)n Simple_repeat Simple_repeat 2 42 0 198 0 0 0 chrY 3545942 3545964 -47967620 + (CAGCC)n Simple_repeat Simple_repeat 1 22 0 222 117 0 50 chrY 3549837 3549897 -47963687 + (TTCC)n Simple_repeat Simple_repeat 1 57 0 210 91 0 0 chrY 3550108 3550141 -47963443 + (A)n Simple_repeat Simple_repeat 1 33 0 308 313 117 50 chrY 3550679 3550874 -47962710 - L1M4 LINE L1 -5019 1365 1142 876 238 30 34 chrY 3550874 3551172 -47962412 - AluJo SINE Alu -4 298 2 308 313 117 50 chrY 3551172 3551276 -47962308 - L1M4 LINE L1 -5242 1142 1046 306 0 0 0 chrY 3551314 3551348 -47962236 + (TG)n Simple_repeat Simple_repeat 2 35 0 2927 252 52 41 chrY 3551484 3552328 -47961256 - L1MA8 LINE L1 0 6291 5459 207 0 0 0 chrY 3552328 3552351 -47961233 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 2927 252 52 41 chrY 3552351 3553226 -47960358 - L1MA8 LINE L1 -832 5459 4559 28 48 0 0 chrY 3555543 3555585 -47957999 + AT_rich Low_complexity Low_complexity 1 42 0 1738 205 0 0 chrY 3556776 3557078 -47956506 + AluSx SINE Alu 1 302 -10 1570 137 68 30 chrY 3557115 3557378 -47956206 + AluSx SINE Alu 1 273 -39 2451 119 6 0 chrY 3557520 3557873 -47955711 - THE1A LTR MaLR 0 355 1 348 212 26 0 chrY 3558645 3558758 -47954826 + (TA)n Simple_repeat Simple_repeat 1 116 0 561 330 136 5 chrY 3558769 3559211 -47954373 - L1M4 LINE L1 -2742 3404 2905 1428 292 38 36 chrY 3559239 3559770 -47953814 - HAL1 LINE L1 -462 2045 1504 2069 112 3 62 chrY 3559770 3560091 -47953493 - AluSp SINE Alu -11 302 1 1428 292 38 36 chrY 3560091 3560380 -47953204 - HAL1 LINE L1 -1003 1504 1217 198 250 132 26 chrY 3560659 3560735 -47952849 - L2 LINE L2 -50 3222 3139 1677 144 33 49 chrY 3560776 3561081 -47952503 + AluY SINE Alu 12 311 0 288 314 21 69 chrY 3561362 3561550 -47952034 - L2 LINE L2 -263 3009 2831 1587 182 10 27 chrY 3561551 3561848 -47951736 + AluSq SINE Alu 1 292 -21 1168 150 5 0 chrY 3561853 3562040 -47951544 + AluSp SINE Alu 123 310 -3 306 0 0 0 chrY 3562195 3562229 -47951355 + (CA)n Simple_repeat Simple_repeat 2 35 0 312 274 71 0 chrY 3562278 3562362 -47951222 + L1MC4 LINE L1 6614 6703 -1339 213 94 0 0 chrY 3562394 3562426 -47951158 + (CA)n Simple_repeat Simple_repeat 1 32 0 237 320 112 8 chrY 3562926 3563051 -47950533 - L2 LINE L2 -4 3309 3172 180 346 61 33 chrY 3563231 3563445 -47950139 - L2 LINE L2 -582 2732 2513 367 302 7 60 chrY 3563590 3563739 -47949845 - L2 LINE L2 -2 3311 3171 453 333 124 13 chrY 3563964 3564336 -47949248 - L2 LINE L2 -1310 2004 1592 24 32 0 0 chrY 3564696 3564727 -47948857 + AT_rich Low_complexity Low_complexity 1 31 0 192 311 16 0 chrY 3566103 3566164 -47947420 + L2 LINE L2 3246 3307 -6 724 256 49 67 chrY 3566675 3567019 -47946565 + MER93b LTR ERV1 34 371 -2 610 247 165 28 chrY 3567047 3567338 -47946246 + Charlie2 DNA MER1_type 1861 2191 -671 264 59 0 0 chrY 3567424 3567458 -47946126 + (TG)n Simple_repeat Simple_repeat 1 34 0 2039 124 7 7 chrY 3567458 3567740 -47945844 - AluSp SINE Alu -28 285 1 7318 36 2 0 chrY 3569038 3570204 -47943380 - L1PA4 LINE L1 -5 6150 4980 1142 23 0 0 chrY 3570204 3570333 -47943251 - AluYa5/8 SINE Alu -17 294 166 35188 70 15 1 chrY 3570333 3575251 -47938333 - L1PA4 LINE L1 -1156 4990 1 541 272 193 23 chrY 3575577 3575878 -47937706 - L2 LINE L2 -1177 2137 1786 938 218 38 85 chrY 3575878 3576046 -47937538 - AluSg SINE Alu 0 310 162 8737 56 2 0 chrY 3576046 3577951 -47935633 + L1PA4 LINE L1 4244 6154 -1 938 218 38 85 chrY 3577951 3578099 -47935485 - AluSg SINE Alu -148 162 9 816 327 80 35 chrY 3578103 3578700 -47934884 - L2 LINE L2 -1518 1796 1173 321 47 0 0 chrY 3579342 3579385 -47934199 + (TG)n Simple_repeat Simple_repeat 1 43 0 823 287 10 0 chrY 3579471 3579666 -47933918 + MIR SINE MIR 1 197 -65 227 296 99 0 chrY 3579666 3579747 -47933837 + MIR SINE MIR 52 140 -122 21 36 0 0 chrY 3580665 3580693 -47932891 + AT_rich Low_complexity Low_complexity 1 28 0 21 0 0 0 chrY 3581806 3581827 -47931757 + AT_rich Low_complexity Low_complexity 1 21 0 466 225 0 42 chrY 3582657 3582777 -47930807 + MER41E LTR ERV1 1 115 -397 1793 185 36 74 chrY 3583146 3583751 -47929833 - LTR1 LTR ERV1 -91 694 113 1136 164 22 13 chrY 3583729 3583960 -47929624 - LTR1 LTR ERV1 -552 233 1 * 309 310 112 71 chrY 3586129 3586494 -47927090 - L1M2 LINE L1 -5712 1137 758 1757 183 0 3 chrY 3589789 3589805 -47923779 - AluSx SINE Alu -10 302 287 423 0 0 0 chrY 3589805 3589852 -47923732 + (TG)n Simple_repeat Simple_repeat 2 48 0 1757 183 0 3 chrY 3589852 3590136 -47923448 - AluSx SINE Alu -25 287 3 1806 171 20 0 chrY 3591916 3592209 -47921375 - AluSx SINE Alu -8 304 6 1135 264 40 0 chrY 3592220 3592378 -47921206 - AluJo SINE Alu -21 291 116 207 0 0 0 chrY 3592378 3592401 -47921183 + (TTG)n Simple_repeat Simple_repeat 2 24 0 1135 264 40 0 chrY 3592401 3592515 -47921069 - AluJo SINE Alu -196 116 8 811 249 124 0 chrY 3595298 3595499 -47918085 + AluJb SINE Alu 57 282 -30 360 0 0 0 chrY 3595536 3595576 -47918008 + (CA)n Simple_repeat Simple_repeat 1 40 0 21 0 0 0 chrY 3595883 3595904 -47917680 + AT_rich Low_complexity Low_complexity 1 21 0 28 48 0 0 chrY 3596030 3596072 -47917512 + AT_rich Low_complexity Low_complexity 1 42 0 286 232 61 12 chrY 3604056 3604220 -47909364 + (TA)n Simple_repeat Simple_repeat 2 173 0 10579 134 11 11 chrY 3604667 3606572 -47907012 + L1PA7 LINE L1 2705 4608 -1538 5897 112 9 1 chrY 3606585 3607497 -47906087 + L1PA7 LINE L1 5232 6150 -4 250 219 29 29 chrY 3607497 3607602 -47905982 + (TA)n Simple_repeat Simple_repeat 1 105 0 283 392 17 0 chrY 3608158 3608278 -47905306 + L2 LINE L2 2921 3042 -271 14605 45 3 0 chrY 3608818 3611778 -47901806 - L1PA3 LINE L1 0 6155 3188 14244 47 1 0 chrY 3611780 3613537 -47900047 + L1PA3 LINE L1 1427 3185 -2961 289 275 35 0 chrY 3614042 3614213 -47899371 + (TA)n Simple_repeat Simple_repeat 1 177 0 534 196 14 22 chrY 3614263 3614452 -47899132 + (TA)n Simple_repeat Simple_repeat 1 190 -3072 18681 40 1 0 chrY 3614452 3617381 -47896203 + L1PA3 LINE L1 3213 6152 -3 534 196 14 22 chrY 3617381 3617551 -47896033 + (TA)n Simple_repeat Simple_repeat 190 3262 0 32 26 0 0 chrY 3617556 3617595 -47895989 + AT_rich Low_complexity Low_complexity 1 39 0 480 197 13 6 chrY 3617595 3617904 -47895680 + (TA)n Simple_repeat Simple_repeat 1 311 0 306 193 11 23 chrY 3617915 3618091 -47895493 + (TA)n Simple_repeat Simple_repeat 2 175 0 783 239 0 0 chrY 3618093 3618248 -47895336 + AluSg/x SINE Alu 141 295 -17 27 29 0 0 chrY 3618519 3618553 -47895031 + AT_rich Low_complexity Low_complexity 1 34 0 921 294 28 21 chrY 3619662 3619948 -47893636 - AluJo SINE Alu -14 288 1 21 0 0 0 chrY 3620062 3620083 -47893501 + AT_rich Low_complexity Low_complexity 1 21 0 183 80 0 0 chrY 3621361 3621386 -47892198 + (A)n Simple_repeat Simple_repeat 1 25 0 973 257 70 15 chrY 3621410 3621737 -47891847 - L1MB5 LINE L1 -13 6161 5817 743 196 178 18 chrY 3621762 3622123 -47891461 - L1MB5 LINE L1 -428 5746 5254 649 249 34 39 chrY 3622321 3622631 -47890953 - L1ME LINE L1 -614 5555 5254 22 35 0 0 chrY 3622994 3623023 -47890561 + AT_rich Low_complexity Low_complexity 1 29 0 1165 205 4 17 chrY 3624321 3624555 -47889029 + AluSx SINE Alu 56 286 -26 470 247 34 31 chrY 3624565 3624613 -47888971 - L1MA5 LINE L1 -80 6220 6174 1333 232 0 29 chrY 3624613 3624923 -47888661 - AluJo SINE Alu -10 302 2 470 247 34 31 chrY 3624923 3625096 -47888488 - L1MA5 LINE L1 -126 6174 6000 261 301 37 68 chrY 3625454 3625617 -47887967 + L1M3de LINE L1 1282 1439 -5214 2041 152 3 0 chrY 3625744 3626047 -47887537 - AluSx SINE Alu -8 304 1 1311 135 5 0 chrY 3626098 3626311 -47887273 - AluSp SINE Alu 0 312 99 1249 229 3 50 chrY 3626610 3626907 -47886677 + AluSx SINE Alu 3 285 -17 30 27 0 0 chrY 3626907 3626944 -47886640 + AT_rich Low_complexity Low_complexity 1 37 0 1137 292 10 17 chrY 3626972 3627270 -47886314 - AluJo SINE Alu -5 297 2 2945 129 197 69 chrY 3627274 3627884 -47885700 - LTR12 LTR ERV1 0 688 1 3920 148 8 2 chrY 3627891 3628505 -47885079 - HERV9 LTR ERV1 -25 8374 7757 2242 199 99 62 chrY 3628500 3629350 -47884234 - Harlequin LTR ERV1 -5176 1720 840 * 5464 151 3 16 chrY 3629317 3630223 -47883361 - Harlequin LTR ERV1 -3425 4974 4080 13229 140 16 15 chrY 3630230 3633281 -47880303 - Harlequin LTR ERV1 -5260 3139 1 3615 120 173 40 chrY 3633281 3633888 -47879696 - LTR12 LTR ERV1 0 688 1 227 327 39 88 chrY 3633898 3634041 -47879543 + L1M3de LINE L1 482 614 -6039 1698 185 30 3 chrY 3634041 3634339 -47879245 - AluSx SINE Alu -6 306 1 227 327 39 88 chrY 3634339 3634400 -47879184 + L1M3de LINE L1 614 676 -5977 1407 215 89 54 chrY 3634678 3635083 -47878501 + MSTB LTR MaLR 4 422 -4 1627 189 0 30 chrY 3635289 3635590 -47877994 - AluY SINE Alu -18 293 2 883 325 47 29 chrY 3635698 3636147 -47877437 + L1M3b LINE L1 54 510 -5771 247 241 9 71 chrY 3636990 3637102 -47876482 + L1P LINE L1 3463 3567 -2579 361 318 105 7 chrY 3637421 3637573 -47876011 + AluJ/FLAM SINE Alu 1 87 -215 32 26 0 0 chrY 3638114 3638153 -47875431 + AT_rich Low_complexity Low_complexity 1 39 0 1172 82 6 0 chrY 3638257 3638427 -47875157 + (TTTC)n Simple_repeat Simple_repeat 1 171 0 1259 227 0 31 chrY 3638453 3638744 -47874840 - AluSx SINE Alu -26 286 5 1336 255 3 3 chrY 3638797 3639099 -47874485 - AluSx SINE Alu 0 302 1 312 278 56 24 chrY 3639566 3639692 -47873892 - MLT1F LTR MaLR -27 515 386 275 108 14 40 chrY 3640521 3640595 -47872989 + (TA)n Simple_repeat Simple_repeat 1 72 0 24 0 0 0 chrY 3640862 3640886 -47872698 + AT_rich Low_complexity Low_complexity 1 24 0 24 32 0 0 chrY 3641073 3641104 -47872480 + AT_rich Low_complexity Low_complexity 1 31 0 369 86 0 0 chrY 3643565 3643623 -47869961 + (CA)n Simple_repeat Simple_repeat 1 58 0 299 293 90 18 chrY 3643647 3643814 -47869770 - SST1 Satellite centromeric -11 1552 1374 241 333 0 10 chrY 3643969 3644068 -47869516 - SST1 Satellite centromeric -334 1229 1132 319 316 87 62 chrY 3644534 3645053 -47868531 - SST1 Satellite centromeric -969 594 63 271 77 15 62 chrY 3646046 3646111 -47867473 + (CA)n Simple_repeat Simple_repeat 1 62 0 251 315 56 48 chrY 3646981 3647232 -47866352 - SST1 Satellite centromeric -962 601 349 234 0 0 0 chrY 3648294 3648320 -47865264 + (TTTA)n Simple_repeat Simple_repeat 2 27 0 243 247 25 0 chrY 3648529 3648610 -47864974 + (CA)n Simple_repeat Simple_repeat 1 83 0 208 184 20 20 chrY 3650980 3651029 -47862555 + (CA)n Simple_repeat Simple_repeat 2 50 0 246 333 0 12 chrY 3651373 3651454 -47862130 - SST1 Satellite centromeric -336 1227 1148 280 359 36 26 chrY 3651933 3652323 -47861261 - SST1 Satellite centromeric -963 600 207 225 164 33 16 chrY 3653432 3653493 -47860091 + (CA)n Simple_repeat Simple_repeat 1 62 0 267 299 115 19 chrY 3653514 3653671 -47859913 - SST1 Satellite centromeric -4 1559 1388 23 0 0 0 chrY 3655015 3655038 -47858546 + AT_rich Low_complexity Low_complexity 1 23 0 225 250 0 0 chrY 3655547 3655607 -47857977 + (CA)n Simple_repeat Simple_repeat 1 60 0 249 327 64 56 chrY 3655644 3656017 -47857567 - SST1 Satellite centromeric -25 1538 1163 254 60 0 80 chrY 3656778 3656828 -47856756 + (CA)n Simple_repeat Simple_repeat 2 47 0 292 347 54 46 chrY 3657740 3658201 -47855383 - SST1 Satellite centromeric -961 602 138 22 0 0 0 chrY 3658734 3658756 -47854828 + AT_rich Low_complexity Low_complexity 1 22 0 3834 66 2 4 chrY 3659038 3659371 -47854213 - L1PA3 LINE L1 -2 6153 5820 2262 82 0 10 chrY 3659371 3659664 -47853920 - AluY SINE Alu -13 298 9 3834 66 2 4 chrY 3659664 3659799 -47853785 - L1PA3 LINE L1 -335 5820 5686 2286 32 0 0 chrY 3659799 3660076 -47853508 + L1P LINE L1 4979 5255 -891 200 189 40 14 chrY 3660309 3660383 -47853201 + (CA)n Simple_repeat Simple_repeat 2 77 0 304 327 57 36 chrY 3661259 3661647 -47851937 - SST1 Satellite centromeric -961 602 207 216 158 0 0 chrY 3662559 3662597 -47850987 + T-rich Low_complexity Low_complexity 1 38 0 233 100 0 67 chrY 3662802 3662862 -47850722 + (CA)n Simple_repeat Simple_repeat 1 56 0 182 279 139 0 chrY 3663900 3663979 -47849605 + L3 LINE CR1 1397 1486 -91 9429 182 32 21 chrY 3665884 3668192 -47845392 + Harlequin LTR ERV1 1684 4094 -3719 3665 215 11 4 chrY 3668191 3669684 -47843900 + Harlequin LTR ERV1 4386 5999 -1814 * 577 285 0 0 chrY 3669692 3669815 -47843769 + Harlequin LTR ERV1 5467 5589 -1307 * 737 210 156 0 chrY 3669810 3669977 -47843607 + Harlequin LTR ERV1 6703 6895 -1 921 256 3 36 chrY 3669977 3670338 -47843246 + LTR2 LTR ERV1 1 449 0 231 61 0 0 chrY 3672624 3672657 -47840927 + (CA)n Simple_repeat Simple_repeat 2 34 0 238 330 0 0 chrY 3673016 3673110 -47840474 - SST1 Satellite centromeric -324 1239 1146 198 0 0 0 chrY 3674962 3674984 -47838600 + (CA)n Simple_repeat Simple_repeat 1 22 0 180 77 0 0 chrY 3677356 3677382 -47836202 + (CA)n Simple_repeat Simple_repeat 1 26 0 202 146 18 18 chrY 3677499 3677554 -47836030 + (CA)n Simple_repeat Simple_repeat 2 56 0 299 328 48 40 chrY 3678461 3678836 -47834748 - SST1 Satellite centromeric -963 600 223 183 80 0 0 chrY 3680020 3680045 -47833539 + (A)n Simple_repeat Simple_repeat 1 25 0 309 328 58 31 chrY 3682111 3682633 -47830951 - SST1 Satellite centromeric -962 601 66 444 298 63 54 chrY 3684680 3685143 -47828441 - SST1 Satellite centromeric -965 598 132 252 154 0 0 chrY 3686176 3686228 -47827356 + (CA)n Simple_repeat Simple_repeat 1 52 0 2094 143 0 0 chrY 3687691 3687991 -47825593 + AluY SINE Alu 1 300 -11 284 268 14 0 chrY 3692590 3692661 -47820923 - SST1 Satellite centromeric -336 1227 1156 237 298 32 40 chrY 3693473 3693597 -47819987 - SST1 Satellite centromeric -1303 260 138 207 114 0 0 chrY 3694634 3694669 -47818915 + (CA)n Simple_repeat Simple_repeat 2 36 0 234 272 47 70 chrY 3695528 3695741 -47817843 - SST1 Satellite centromeric -1039 524 317 268 234 21 0 chrY 3696969 3697063 -47816521 + (CA)n Simple_repeat Simple_repeat 1 96 0 225 83 0 0 chrY 3699287 3699323 -47814261 + (CA)n Simple_repeat Simple_repeat 1 36 0 281 319 55 40 chrY 3700314 3700643 -47812941 - SST1 Satellite centromeric -1039 524 191 250 244 22 0 chrY 3701750 3701840 -47811744 + (CA)n Simple_repeat Simple_repeat 1 92 0 234 143 0 0 chrY 3703430 3703479 -47810105 + (CA)n Simple_repeat Simple_repeat 2 50 0 258 95 0 0 chrY 3705659 3705701 -47807883 + (T)n Simple_repeat Simple_repeat 1 42 0 268 306 50 71 chrY 3706909 3707291 -47806293 - SST1 Satellite centromeric -963 600 227 183 114 0 0 chrY 3708146 3708181 -47805403 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 196 161 32 0 chrY 3708388 3708450 -47805134 + (CA)n Simple_repeat Simple_repeat 1 64 0 248 304 0 0 chrY 3708798 3708867 -47804717 - SST1 Satellite centromeric -339 1224 1156 294 87 0 0 chrY 3710797 3710843 -47802741 + (CA)n Simple_repeat Simple_repeat 1 46 0 17795 46 3 1 chrY 3711005 3713963 -47799621 - L1PA4 LINE L1 -1 6154 3189 1590 39 0 0 chrY 3713958 3714164 -47799420 + L1PA4 LINE L1 2979 3184 -2962 * 180 179 0 0 chrY 3715706 3715745 -47797839 + (CA)n Simple_repeat Simple_repeat 1 39 0 231 284 14 14 chrY 3716122 3716196 -47797388 - SST1 Satellite centromeric -334 1229 1156 262 282 32 40 chrY 3716979 3717103 -47796481 - SST1 Satellite centromeric -1303 260 138 203 111 0 74 chrY 3718144 3718198 -47795386 + (CA)n Simple_repeat Simple_repeat 1 50 0 195 42 0 0 chrY 3718367 3718391 -47795193 + (TAAA)n Simple_repeat Simple_repeat 2 25 0 227 338 0 0 chrY 3721133 3721210 -47792374 - SST1 Satellite centromeric -339 1224 1148 318 26 0 0 chrY 3723177 3723216 -47790368 + (CA)n Simple_repeat Simple_repeat 1 39 0 246 355 51 38 chrY 3724145 3724674 -47788910 - SST1 Satellite centromeric -962 601 66 234 107 27 53 chrY 3725620 3725695 -47787889 + (CA)n Simple_repeat Simple_repeat 1 73 0 374 296 68 52 chrY 3726560 3726810 -47786774 - SST1 Satellite centromeric -961 602 349 186 71 0 0 chrY 3727298 3727326 -47786258 + (TTTG)n Simple_repeat Simple_repeat 2 29 0 285 214 20 10 chrY 3727550 3727648 -47785936 + (CA)n Simple_repeat Simple_repeat 2 100 0 263 319 60 57 chrY 3728492 3728740 -47784844 - SST1 Satellite centromeric -963 600 352 232 303 92 60 chrY 3730016 3730267 -47783317 - SST1 Satellite centromeric -1167 396 138 247 250 22 0 chrY 3731315 3731407 -47782177 + (CA)n Simple_repeat Simple_repeat 1 94 0 277 283 97 48 chrY 3731410 3731555 -47782029 - SST1 Satellite centromeric -25 1538 1387 230 287 85 60 chrY 3732393 3732710 -47780874 - SST1 Satellite centromeric -1102 461 137 542 306 66 46 chrY 3734665 3735119 -47778465 - SST1 Satellite centromeric -963 600 138 362 295 80 66 chrY 3737007 3737519 -47776065 - SST1 Satellite centromeric -962 601 83 180 97 0 0 chrY 3738533 3738564 -47775020 + (CA)n Simple_repeat Simple_repeat 2 32 0 245 290 103 19 chrY 3738588 3738743 -47774841 - SST1 Satellite centromeric -11 1552 1385 289 292 78 41 chrY 3739772 3740015 -47773569 - SST1 Satellite centromeric -1283 280 29 195 42 0 0 chrY 3740387 3740411 -47773173 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 195 42 0 0 chrY 3740482 3740506 -47773078 + (GAAA)n Simple_repeat Simple_repeat 2 25 0 222 62 0 0 chrY 3740629 3740661 -47772923 + (CA)n Simple_repeat Simple_repeat 1 32 0 6426 26 0 0 chrY 3740827 3741563 -47772021 + L1PA2 LINE L1 5412 6147 -8 26 50 0 0 chrY 3741628 3741668 -47771916 + AT_rich Low_complexity Low_complexity 1 40 0 339 149 0 0 chrY 3742510 3742584 -47771000 + (CA)n Simple_repeat Simple_repeat 1 74 0 310 309 77 77 chrY 3742608 3743013 -47770571 - SST1 Satellite centromeric -11 1552 1148 283 317 50 50 chrY 3743491 3743889 -47769695 - SST1 Satellite centromeric -959 604 207 185 83 28 0 chrY 3744978 3745014 -47768570 + (CA)n Simple_repeat Simple_repeat 1 37 0 342 276 58 46 chrY 3746024 3746198 -47767386 - SST1 Satellite centromeric -1039 524 349 388 300 74 74 chrY 3748939 3749329 -47764255 - SST1 Satellite centromeric -11 1552 1163 403 325 55 46 chrY 3750137 3750596 -47762988 - SST1 Satellite centromeric -962 601 139 28 0 0 0 chrY 3751146 3751174 -47762410 + AT_rich Low_complexity Low_complexity 1 28 0 273 29 0 0 chrY 3751438 3751472 -47762112 + (CA)n Simple_repeat Simple_repeat 2 35 0 508 304 66 33 chrY 3752195 3752590 -47760994 - SST1 Satellite centromeric -1039 524 117 180 167 0 0 chrY 3753620 3753668 -47759916 + (CA)n Simple_repeat Simple_repeat 1 48 0 243 315 83 79 chrY 3754569 3755074 -47758510 - SST1 Satellite centromeric -963 600 94 2367 192 35 53 chrY 3755963 3756567 -47757017 - LTR1 LTR ERV1 -104 681 89 650 165 8 25 chrY 3756572 3756693 -47756891 - LTR1 LTR ERV1 -666 119 1 252 286 91 0 chrY 3756858 3756935 -47756649 - LTR33A LTR ERVL -338 185 102 23 33 0 0 chrY 3757690 3757720 -47755864 + AT_rich Low_complexity Low_complexity 1 30 0 319 299 11 0 chrY 3757868 3757955 -47755629 - FRAM SINE Alu -10 156 69 436 54 0 27 chrY 3758406 3758480 -47755104 + (TA)n Simple_repeat Simple_repeat 1 72 0 327 319 0 69 chrY 3758521 3758665 -47754919 + L1MC4 LINE L1 6586 6719 -1323 180 0 0 0 chrY 3758669 3758689 -47754895 + (TA)n Simple_repeat Simple_repeat 2 21 0 1158 258 3 3 chrY 3759338 3759621 -47753963 + AluSx SINE Alu 1 283 -19 1264 211 0 14 chrY 3759690 3759969 -47753615 + AluSx SINE Alu 12 286 -26 1349 51 11 0 chrY 3759993 3760010 -47753574 + (GAAA)n Simple_repeat Simple_repeat 1 196 0 1349 51 11 0 chrY 3760010 3760187 -47753397 + (GAAA)n Simple_repeat Simple_repeat 2 180 0 420 245 7 116 chrY 3760976 3761123 -47752461 - FLAM_C SINE Alu -2 131 1 273 325 8 26 chrY 3761240 3761357 -47752227 + MLT1E LTR MaLR 361 475 -118 207 0 0 0 chrY 3761366 3761389 -47752195 + (TG)n Simple_repeat Simple_repeat 2 24 0 609 352 60 33 chrY 3762399 3762851 -47750733 - L1M3b LINE L1 -5771 510 47 1618 205 0 22 chrY 3762930 3763242 -47750342 + AluY SINE Alu 2 306 -5 1146 234 54 56 chrY 3763447 3763874 -47749710 - MSTB1 LTR MaLR -6 426 1 244 332 18 73 chrY 3764147 3764208 -47749376 - L1M3de LINE L1 -5977 676 613 1971 151 3 3 chrY 3764208 3764512 -47749072 + AluSx SINE Alu 1 304 -8 244 332 18 73 chrY 3764512 3764670 -47748914 - L1M3de LINE L1 -6040 613 469 18756 124 44 43 chrY 3764670 3768252 -47745332 + HERV17 LTR ERV1 6 3139 -236 5359 128 6 10 chrY 3768259 3769128 -47744456 + HERV17 LTR ERV1 4080 4944 -3455 1586 187 59 57 chrY 3769129 3770138 -47743446 + HERV17 LTR ERV1 706 1720 -5176 * 3302 138 74 2 chrY 3770134 3770713 -47742871 + HERV17 LTR ERV1 7758 8378 -21 3190 143 283 0 chrY 3770716 3771138 -47742446 + LTR12 LTR ERV1 1 303 -523 2868 10 0 0 chrY 3771138 3771449 -47742135 + AluY SINE Alu 1 311 0 3190 143 283 0 chrY 3771449 3771670 -47741914 + LTR12 LTR ERV1 303 826 0 1095 269 3 29 chrY 3771674 3771983 -47741601 + AluJo SINE Alu 2 302 0 1217 254 3 17 chrY 3772033 3772321 -47741263 - AluSx SINE Alu -16 286 3 1422 129 5 0 chrY 3772623 3772825 -47740759 + AluSp SINE Alu 102 304 -9 648 141 0 0 chrY 3772881 3772980 -47740604 + AluS SINE Alu 1 99 -214 366 277 39 0 chrY 3772993 3773147 -47740437 + L1MA4 LINE L1 6013 6176 -124 580 264 34 34 chrY 3773148 3773326 -47740258 + AluJb SINE Alu 2 179 -133 27 0 0 0 chrY 3774612 3774639 -47738945 + AT_rich Low_complexity Low_complexity 1 27 0 835 286 19 19 chrY 3774747 3775006 -47738578 + AluJo SINE Alu 2 260 -52 25 0 0 0 chrY 3775530 3775555 -47738029 + AT_rich Low_complexity Low_complexity 1 25 0 1424 227 0 3 chrY 3775837 3776136 -47737448 - AluSg SINE Alu -12 298 1 353 81 16 0 chrY 3776142 3776204 -47737380 + (TAGA)n Simple_repeat Simple_repeat 4 66 0 21 36 0 0 chrY 3776216 3776244 -47737340 + AT_rich Low_complexity Low_complexity 1 28 0 7115 50 0 0 chrY 3777270 3778743 -47734841 - L1PA4 LINE L1 -1 6154 4687 2933 41 18 0 chrY 3778743 3779137 -47734447 + L1PA4 LINE L1 4301 4701 -1445 189 394 21 0 chrY 3779163 3779257 -47734327 - L2 LINE L2 -290 3023 2928 180 269 39 0 chrY 3779430 3779482 -47734102 - L2 LINE L2 -713 2601 2548 272 251 55 6 chrY 3779783 3779946 -47733638 + (TA)n Simple_repeat Simple_repeat 2 172 0 6013 101 6 6 chrY 3779946 3780860 -47732724 - L1PA7 LINE L1 -4 6150 5231 9641 142 45 9 chrY 3780872 3782709 -47730875 - L1PA7 LINE L1 -1538 4608 2706 31 0 0 0 chrY 3783014 3783045 -47730539 + AT_rich Low_complexity Low_complexity 1 31 0 230 257 68 0 chrY 3783072 3783220 -47730364 + (TA)n Simple_repeat Simple_repeat 2 159 0 5909 101 15 26 chrY 3786252 3787213 -47726371 - MER11C LTR ERVK 0 1071 122 6294 27 7 0 chrY 3787213 3787951 -47725633 + L1PA2 LINE L1 5409 6151 -4 30 45 0 0 chrY 3787951 3787995 -47725589 + AT_rich Low_complexity Low_complexity 1 44 0 1014 72 20 3 chrY 3788040 3788194 -47725390 - MER11B LTR ERVK -1006 260 1 239 286 6 57 chrY 3792822 3792997 -47720587 + CT-rich Low_complexity Low_complexity 1 166 0 33 43 0 0 chrY 3793618 3793665 -47719919 + AT_rich Low_complexity Low_complexity 1 47 0 375 23 0 0 chrY 3794113 3794157 -47719427 + (TG)n Simple_repeat Simple_repeat 1 44 0 782 255 68 0 chrY 3794182 3794374 -47719210 - AluJb SINE Alu -30 282 78 4115 86 2 9 chrY 3796461 3797034 -47716550 - L1PA5 LINE L1 0 6154 5586 1731 95 8 8 chrY 3797034 3797343 -47716241 + L1PA5 LINE L1 5337 5574 -580 1149 248 3 18 chrY 3798027 3798313 -47715271 + AluJo SINE Alu 8 289 -23 1670 170 21 18 chrY 3798325 3798608 -47714976 + AluSx SINE Alu 9 292 -20 25 90 0 0 chrY 3803094 3803161 -47710423 + AT_rich Low_complexity Low_complexity 1 67 0 3403 180 37 20 chrY 3804117 3804905 -47708679 - L1PA16 LINE L1 -9 6157 5357 13135 40 1 0 chrY 3804919 3806592 -47706992 - L1PA4 LINE L1 -918 5228 3555 7282 39 9 0 chrY 3806592 3807524 -47706060 + L1PA4 LINE L1 5215 6154 -1 22 0 0 0 chrY 3807703 3807725 -47705859 + AT_rich Low_complexity Low_complexity 1 22 0 34 24 0 0 chrY 3808003 3808044 -47705540 + AT_rich Low_complexity Low_complexity 1 41 0 240 308 53 8 chrY 3810104 3810275 -47703309 - L1M3 LINE L1 -642 5529 5352 190 324 27 27 chrY 3810734 3810808 -47702776 + MER5A DNA MER1_type 43 116 -73 423 0 0 0 chrY 3810891 3810961 -47702623 + (CA)n Simple_repeat Simple_repeat 1 117 0 423 0 0 0 chrY 3810961 3811008 -47702576 + (CA)n Simple_repeat Simple_repeat 2 48 0 420 313 121 29 chrY 3812109 3812390 -47701194 - L2 LINE L2 -812 2502 2196 278 266 23 0 chrY 3818092 3818220 -47695364 + (TA)n Simple_repeat Simple_repeat 1 131 0 21 0 0 0 chrY 3818637 3818658 -47694926 + AT_rich Low_complexity Low_complexity 1 21 0 205 343 37 19 chrY 3818677 3818785 -47694799 - MIR3 SINE MIR -89 119 10 226 300 82 18 chrY 3819756 3819866 -47693718 + MER117 DNA MER1_type 1 117 -80 264 262 287 8 chrY 3820084 3820206 -47693378 - MIR SINE MIR -7 255 100 949 142 5 63 chrY 3821829 3821992 -47691592 + MER34 LTR ERV1 11 163 -379 2525 118 6 3 chrY 3821992 3822355 -47691229 + THE1B LTR MaLR 1 364 0 949 142 5 63 chrY 3822355 3822381 -47691203 + MER34 LTR ERV1 163 189 -353 730 251 50 82 chrY 3822515 3822834 -47690750 + L2 LINE L2 3005 3313 0 2013 112 7 4 chrY 3822992 3823270 -47690314 + AluSx SINE Alu 3 281 -31 458 17 0 17 chrY 3823273 3823333 -47690251 + (TAAA)n Simple_repeat Simple_repeat 2 60 0 22 70 0 0 chrY 3823540 3823583 -47690001 + AT_rich Low_complexity Low_complexity 1 43 0 374 285 81 41 chrY 3823777 3824023 -47689561 - L1MC/D LINE L1 -844 5515 5260 709 278 17 0 chrY 3824278 3824458 -47689126 + MER5A DNA MER1_type 2 184 -5 1852 200 28 16 chrY 3824577 3825025 -47688559 + MER89 LTR ERV1 6 559 0 1714 92 103 22 chrY 3826179 3826452 -47687132 - AluY SINE Alu -16 295 1 279 286 42 74 chrY 3826583 3826772 -47686812 + MLT1K LTR MaLR 403 585 -3 259 270 16 0 chrY 3827174 3827244 -47686340 + (TATATG)n Simple_repeat Simple_repeat 1 71 0 280 161 36 0 chrY 3827560 3827616 -47685968 + Alu SINE Alu 245 302 0 27 0 0 0 chrY 3827649 3827676 -47685908 + AT_rich Low_complexity Low_complexity 1 27 0 1348 271 31 29 chrY 3827709 3828162 -47685422 + MER31B LTR ERV1 13 466 0 245 222 16 0 chrY 3828174 3828237 -47685347 - L1ME1 LINE L1 -86 6080 6017 25 31 0 0 chrY 3828250 3828282 -47685302 + AT_rich Low_complexity Low_complexity 1 32 0 28 29 0 0 chrY 3829688 3829723 -47683861 + AT_rich Low_complexity Low_complexity 1 35 0 2290 103 3 0 chrY 3830308 3830618 -47682966 - AluY SINE Alu 0 311 1 348 64 0 0 chrY 3831370 3831417 -47682167 + (TG)n Simple_repeat Simple_repeat 2 48 0 2083 105 3 7 chrY 3831487 3831782 -47681802 + AluSq SINE Alu 1 294 -19 193 325 48 36 chrY 3831894 3831977 -47681607 + L2 LINE L2 3189 3272 0 191 284 40 14 chrY 3832054 3832128 -47681456 - MIR3 SINE MIR -3 205 130 2177 178 31 5 chrY 3832129 3832550 -47681034 + MSTB1 LTR MaLR 1 432 0 461 250 56 19 chrY 3833198 3833358 -47680226 - HAL1 LINE L1 -131 2376 2211 528 310 6 6 chrY 3833407 3833565 -47680019 + LTR16B LTR ERVL 2 159 -305 331 293 12 0 chrY 3833569 3833651 -47679933 - Charlie1 DNA MER1_type -2678 83 1 241 94 0 0 chrY 3833731 3833763 -47679821 - Tigger1 DNA MER2_type 0 2418 2387 * 550 171 0 18 chrY 3833761 3833872 -47679712 + MSTB1 LTR MaLR 172 280 -152 * 12863 168 25 11 chrY 3833871 3836183 -47677401 - Tigger1 DNA MER2_type -30 2388 45 8485 260 33 48 chrY 3836190 3839386 -47674198 + L1PB3 LINE L1 10 3145 -3703 669 237 162 13 chrY 3839400 3839708 -47673876 - L1 LINE L1 -2988 3158 2805 6043 220 62 14 chrY 3839709 3842763 -47670821 + L1PB3 LINE L1 3149 6516 -340 342 0 0 0 chrY 3842763 3842801 -47670783 + (TA)n Simple_repeat Simple_repeat 1 38 0 6043 220 62 14 chrY 3842801 3843160 -47670424 + L1PB3 LINE L1 6516 6856 0 28 0 0 0 chrY 3843164 3843192 -47670392 + AT_rich Low_complexity Low_complexity 1 28 0 4952 189 57 9 chrY 3843210 3845261 -47668323 + L1MA4A LINE L1 4149 6298 -5 351 186 0 0 chrY 3845264 3845323 -47668261 - Tigger1 DNA MER2_type -2359 59 1 388 352 55 11 chrY 3846495 3846677 -47666907 + L3 LINE CR1 1379 1568 -9 532 371 4 9 chrY 3846727 3846959 -47666625 + L2 LINE L2 2160 2390 -924 341 307 16 8 chrY 3847043 3847170 -47666414 - MER91B DNA MER1_type -61 129 2 587 312 82 52 chrY 3847185 3847528 -47666056 + L2 LINE L2 2384 2736 -578 443 344 144 23 chrY 3848188 3848685 -47664899 + L2 LINE L2 2737 3300 -13 2122 95 34 0 chrY 3848993 3849287 -47664297 - AluY SINE Alu -7 304 1 247 309 55 27 chrY 3849288 3849398 -47664186 - L2 LINE L2 -22 3291 3179 1483 186 197 0 chrY 3849579 3849940 -47663644 + MER66A LTR ERV1 2 433 -45 22 0 0 0 chrY 3850558 3850580 -47663004 + AT_rich Low_complexity Low_complexity 1 22 0 1467 167 48 0 chrY 3851121 3851372 -47662212 - Tigger3(Golem) DNA MER2_type -1 3028 2766 1187 171 138 30 chrY 3852198 3852502 -47661082 - L1MC3 LINE L1 -21 7764 7428 2265 48 7 14 chrY 3852513 3852807 -47660777 - AluY SINE Alu -19 292 1 1385 250 121 13 chrY 3852808 3853204 -47660380 + MER31B LTR ERV1 7 445 -21 2335 188 22 53 chrY 3853207 3853713 -47659871 + MLT2B1 LTR ERVL 21 510 -10 4068 221 51 20 chrY 3853745 3854776 -47658808 - L1MC3 LINE L1 -352 7433 6371 2232 151 48 10 chrY 3854776 3855188 -47658396 + MSTA LTR MaLR 1 428 0 8641 186 22 7 chrY 3855188 3856815 -47656769 + MSTA-int LTR MaLR 1 1651 0 1930 152 53 6 chrY 3856818 3857160 -47656424 + MSTA LTR MaLR 4 361 -67 320 211 0 56 chrY 3857160 3857250 -47656334 - L1MC4 LINE L1 -1344 6698 6614 209 207 0 17 chrY 3857252 3857310 -47656274 + (CATATA)n Simple_repeat Simple_repeat 6 62 0 372 96 0 0 chrY 3857313 3857365 -47656219 + MSTA LTR MaLR 377 428 0 4221 228 39 36 chrY 3857388 3858217 -47655367 - L1MC3 LINE L1 -748 5398 4573 6454 62 0 12 chrY 3858217 3859061 -47654523 + L1PA6 LINE L1 5321 6154 0 4221 228 39 36 chrY 3859061 3859090 -47654494 - L1MC3 LINE L1 -1573 4573 4546 1347 172 39 88 chrY 3859090 3859474 -47654110 - MLT1A1 LTR MaLR 0 365 1 4221 228 39 36 chrY 3859474 3860310 -47653274 - L1MC3 LINE L1 -1600 4546 4656 1905 157 0 0 chrY 3860310 3860610 -47652974 + AluSx SINE Alu 1 300 -12 4221 228 39 36 chrY 3860610 3860879 -47652705 - L1MC3 LINE L1 -1489 4657 4390 3057 147 85 5 chrY 3860947 3861533 -47652051 - L1PA16 LINE L1 -2 6164 5532 1818 224 30 72 chrY 3861534 3862064 -47651520 + MLT2B3 LTR ERVL 1 508 -46 8406 53 9 0 chrY 3862066 3863916 -47649668 - L1PA5 LINE L1 0 6154 4291 1909 23 0 0 chrY 3863916 3864135 -47649449 + L1P LINE L1 4027 4245 -1901 492 128 13 3 chrY 3864136 3864239 -47649345 + MLT2A2 LTR ERVL 386 453 0 * 3629 208 17 14 chrY 3864239 3865318 -47648266 - L1PA16 LINE L1 -631 5535 4448 186 71 0 0 chrY 3865318 3865346 -47648238 + (TG)n Simple_repeat Simple_repeat 1 28 0 3629 208 17 14 chrY 3865346 3865386 -47648198 - L1PA16 LINE L1 -1718 4448 4410 916 255 45 16 chrY 3865509 3866015 -47647569 - L1MC3 LINE L1 -2877 3269 2749 680 288 25 25 chrY 3866043 3866279 -47647305 + L1M4 LINE L1 24 259 -6283 9628 211 11 19 chrY 3866454 3867094 -47646490 + L1 LINE L1 17 660 -6905 2196 125 3 0 chrY 3867094 3867397 -47646187 + AluSq SINE Alu 1 304 -9 9628 211 11 19 chrY 3867397 3868686 -47644898 + L1 LINE L1 660 1931 -5634 972 192 4 73 chrY 3868688 3868775 -47644809 + L1 LINE L1 5235 5326 -2239 2356 100 0 0 chrY 3868775 3869085 -47644499 + AluSg SINE Alu 1 310 0 972 192 4 73 chrY 3869085 3869242 -47644342 + L1 LINE L1 5326 5462 -2103 243 143 0 0 chrY 3869243 3869278 -47644306 + MER61E LTR ERV1 531 565 -4 1657 269 52 37 chrY 3869291 3870093 -47643491 - L1ME3A LINE L1 -180 5990 5176 25 0 0 0 chrY 3870395 3870420 -47643164 + AT_rich Low_complexity Low_complexity 1 25 0 55 48 0 0 chrY 3872070 3872153 -47641431 + AT_rich Low_complexity Low_complexity 1 83 0 400 315 27 0 chrY 3872420 3872531 -47641053 - LTR16C LTR ERVL -314 177 64 239 208 217 19 chrY 3872641 3872747 -47640837 + MIR SINE MIR 122 248 -14 33 66 0 0 chrY 3872956 3873017 -47640567 + AT_rich Low_complexity Low_complexity 1 61 0 478 352 102 20 chrY 3873501 3873845 -47639739 + L2 LINE L2 2304 2675 -639 243 296 70 0 chrY 3873849 3873920 -47639664 + L2 LINE L2 3228 3303 -10 562 351 32 59 chrY 3874130 3874571 -47639013 + L2 LINE L2 2844 3272 0 1064 325 27 19 chrY 3874672 3875085 -47638499 + LTR16A LTR ERVL 30 445 -5 258 236 18 0 chrY 3875246 3875301 -47638283 + MER39 LTR ERV1 1 56 -651 * 811 269 71 47 chrY 3875296 3875660 -47637924 + MER39 LTR ERV1 335 707 0 246 283 74 30 chrY 3876145 3876279 -47637305 + LTR33A LTR ERVL 294 433 -88 191 167 24 0 chrY 3877454 3877496 -47636088 + CT-rich Low_complexity Low_complexity 2 44 0 4322 176 18 44 chrY 3877953 3878917 -47634667 - L1MA10 LINE L1 0 6334 5396 391 248 202 0 chrY 3878921 3879050 -47634534 + MER50 LTR ERV1 14 168 -566 1498 218 89 40 chrY 3879114 3879564 -47634020 + MER50 LTR ERV1 241 712 -22 3332 218 22 46 chrY 3879580 3880577 -47633007 - L1MA10 LINE L1 -745 5401 4443 1885 148 58 18 chrY 3880577 3880907 -47632677 - MER61A LTR ERV1 0 343 1 3332 218 22 46 chrY 3880907 3880918 -47632666 - L1MA10 LINE L1 -1703 4443 4433 24694 102 33 21 chrY 3880918 3883545 -47630039 - MER61A-int LTR ERV1 -11 5206 2519 4886 81 5 77 chrY 3883545 3884286 -47629298 - LTR12 LTR ERV1 0 688 1 24694 102 33 21 chrY 3884286 3885412 -47628172 - MER61A-int LTR ERV1 -2698 2519 1408 321 47 0 0 chrY 3885411 3885454 -47628130 - MER61A-int LTR ERV1 -3855 1362 1320 * 1321 170 31 40 chrY 3885447 3886052 -47627532 - MER61A-int LTR ERV1 -4440 777 1 1376 163 150 3 chrY 3886052 3886346 -47627238 - MER61A LTR ERV1 0 343 7 6539 219 65 47 chrY 3886348 3888583 -47625001 - L1MA10 LINE L1 -1698 4448 2172 24 0 0 0 chrY 3888594 3888618 -47624966 + AT_rich Low_complexity Low_complexity 1 24 0 4793 189 2 9 chrY 3888658 3889568 -47624016 - L1PA16 LINE L1 -6 6160 5257 1875 249 25 2 chrY 3889902 3890336 -47623248 + MLT1C LTR MaLR 3 446 -21 2007 205 29 20 chrY 3890336 3890784 -47622800 - MER66A LTR ERV1 0 478 27 756 235 0 0 chrY 3890791 3890927 -47622657 - MER66A-int LTR ERV1 0 6676 6541 437 210 56 31 chrY 3890927 3891089 -47622495 + L1M1 LINE L1 2711 3205 -4361 251 0 59 0 chrY 3891130 3891164 -47622420 + (TTTG)n Simple_repeat Simple_repeat 2 37 0 271 362 8 16 chrY 3891854 3891981 -47621603 + L1PBb LINE L1 768 893 -5957 275 294 11 11 chrY 3892435 3892527 -47621057 + L1PBb LINE L1 1473 1564 -5285 * 10324 234 32 33 chrY 3892512 3897759 -47615825 + L1PA16 LINE L1 1335 6682 -187 40 87 0 0 chrY 3897788 3897891 -47615693 + AT_rich Low_complexity Low_complexity 1 103 0 333 150 159 9 chrY 3897896 3898009 -47615575 + L1MA7 LINE L1 6086 6215 -76 243 61 0 0 chrY 3898011 3898044 -47615540 + (TG)n Simple_repeat Simple_repeat 2 34 0 11423 166 27 2 chrY 3898050 3899872 -47613712 - L1PA12 LINE L1 -5712 1869 1 1264 325 61 103 chrY 3900447 3901191 -47612393 - L2 LINE L2 -2016 1298 524 1944 143 52 25 chrY 3901191 3901554 -47612030 + THE1C LTR MaLR 1 373 -2 229 62 31 0 chrY 3901554 3901586 -47611998 + THE1B LTR MaLR 332 364 0 1264 325 61 103 chrY 3901586 3902055 -47611529 - L2 LINE L2 -2788 526 106 36 70 0 0 chrY 3902454 3902525 -47611059 + AT_rich Low_complexity Low_complexity 1 71 0 3935 136 71 37 chrY 3902554 3903288 -47610296 - LTR1 LTR ERV1 0 785 27 571 293 68 60 chrY 3903398 3903798 -47609786 + L1ME1 LINE L1 2 404 -5641 1629 253 207 40 chrY 3903824 3904799 -47608785 + L1ME1 LINE L1 542 1353 -5211 1276 188 4 174 chrY 3904799 3905298 -47608286 - MLT2D LTR ERVL 0 414 1 1629 253 207 40 chrY 3905298 3905995 -47607589 + L1ME1 LINE L1 1353 1932 -4632 2316 108 3 0 chrY 3905995 3906300 -47607284 + AluSp SINE Alu 1 306 -7 1629 253 207 40 chrY 3906300 3906387 -47607197 + L1ME1 LINE L1 1932 2608 -3956 819 134 0 8 chrY 3906384 3906518 -47607066 - L1PA16 LINE L1 -263 5903 5771 * 785 164 16 28 chrY 3906505 3906733 -47606851 + L1PA16 LINE L1 5905 6165 -1 * 381 340 32 26 chrY 3906753 3907161 -47606423 + L1ME3 LINE L1 5482 5888 -274 * 41869 44 24 2 chrY 3907149 3913163 -47600421 + L1PA3 LINE L1 2 6155 0 1469 263 40 37 chrY 3913395 3914095 -47599489 + L1ME1 LINE L1 2618 3319 -3245 752 238 77 35 chrY 3914097 3914363 -47599221 + L1ME1 LINE L1 4120 4404 -2160 1990 216 41 5 chrY 3914363 3914774 -47598810 - MSTB LTR MaLR 0 426 1 752 238 77 35 chrY 3914774 3914847 -47598737 + L1ME1 LINE L1 4404 4473 -2091 * 3066 217 55 6 chrY 3914845 3915638 -47597946 + L1MC3 LINE L1 6945 7776 -9 1107 281 24 36 chrY 3915970 3916478 -47597106 - L1M LINE L1 -743 5403 4912 2383 267 35 34 chrY 3916503 3917687 -47595897 + L1ME1 LINE L1 5388 6569 -15 4031 153 24 1 chrY 3917840 3918537 -47595047 - L1MA1 LINE L1 -4 6298 5586 589 135 11 0 chrY 3918537 3918626 -47594958 - L1M1 LINE L1 -606 5696 5607 * 1823 205 14 0 chrY 3918625 3918995 -47594589 - L1M1 LINE L1 -1083 5063 4689 1488 223 8 51 chrY 3919095 3919450 -47594134 + MLT1A1 LTR MaLR 1 340 -25 6543 48 2 5 chrY 3919452 3920268 -47593316 - L1PA7 LINE L1 -13 6141 5328 2671 303 36 20 chrY 3920288 3921193 -47592391 - L1M4 LINE L1 -5621 921 2 3690 252 58 65 chrY 3921262 3923254 -47590330 - L1MDb LINE L1 -1525 4881 2904 5263 209 63 23 chrY 3923367 3924446 -47589138 - L1MC3 LINE L1 -9 7776 6627 1788 198 19 3 chrY 3924446 3924805 -47588779 + MLT1A1 LTR MaLR 1 365 0 5263 209 63 23 chrY 3924805 3925115 -47588469 - L1MC3 LINE L1 -1158 6627 6331 3696 228 40 24 chrY 3925131 3926307 -47587277 - L1MB4 LINE L1 -1 6179 5024 198 71 0 0 chrY 3926307 3926335 -47587249 + (TTG)n Simple_repeat Simple_repeat 3 30 0 1710 173 7 0 chrY 3926338 3926622 -47586962 - AluJb SINE Alu -26 286 1 3696 228 40 24 chrY 3926622 3927284 -47586300 - L1MB4 LINE L1 -1157 5023 4309 462 255 68 0 chrY 3927274 3927466 -47586118 - L1M4 LINE L1 -807 5339 5135 * 860 257 49 6 chrY 3927445 3927791 -47585793 - L1MDb LINE L1 -3937 2469 2109 23 68 0 0 chrY 3927849 3927893 -47585691 + AT_rich Low_complexity Low_complexity 1 44 0 946 159 25 18 chrY 3927897 3928060 -47585524 - AluSg/x SINE Alu -20 292 129 2781 245 47 64 chrY 3928060 3929550 -47584034 - L1MDb LINE L1 -4458 1948 468 394 193 11 23 chrY 3930665 3930753 -47582831 + MER103 DNA DNA 6 92 -74 449 276 98 74 chrY 3931125 3931596 -47581988 + L1ME3A LINE L1 4364 4845 -1301 304 267 48 27 chrY 3931604 3931750 -47581834 + L1ME3A LINE L1 4904 5052 -1094 355 226 39 111 chrY 3931797 3932126 -47581458 + L1ME3A LINE L1 5185 5495 -669 1910 179 5 60 chrY 3932126 3932539 -47581045 - MLT1B LTR MaLR 0 390 1 414 302 92 8 chrY 3932659 3932981 -47580603 + L1ME3A LINE L1 5525 5883 -287 3129 173 45 21 chrY 3933007 3933712 -47579872 - L1M1 LINE L1 -4096 3469 2748 6540 215 21 25 chrY 3933779 3935408 -47578176 - L1 LINE L1 -1186 4960 3337 25 31 0 0 chrY 3935408 3935440 -47578144 + AT_rich Low_complexity Low_complexity 1 32 0 301 210 0 100 chrY 3935441 3935541 -47578043 + L1MC4 LINE L1 6614 6703 -1339 405 253 0 0 chrY 3935553 3935699 -47577885 + (TA)n Simple_repeat Simple_repeat 2 147 0 297 283 0 0 chrY 3935771 3935923 -47577661 + (TA)n Simple_repeat Simple_repeat 2 153 0 277 255 0 32 chrY 3935924 3936018 -47577566 + L1MC4 LINE L1 6613 6703 -1339 1782 132 10 28 chrY 3936021 3936309 -47577275 - AluSx SINE Alu -29 283 1 2706 242 39 18 chrY 3936309 3937155 -47576429 - L1 LINE L1 -2801 3345 2482 11922 184 29 47 chrY 3937184 3937812 -47575772 + L1P LINE L1 2386 3024 -3122 1845 148 7 16 chrY 3937812 3938116 -47575468 + AluSx SINE Alu 6 306 -6 11922 184 29 47 chrY 3938116 3940409 -47573175 + L1P LINE L1 3024 5253 -893 6937 59 5 2 chrY 3940409 3941306 -47572278 + L1PA7 LINE L1 5254 6152 -2 3022 269 28 22 chrY 3941319 3941787 -47571797 - L1PBb LINE L1 -3654 2549 2085 1737 248 41 5 chrY 3941787 3942198 -47571386 + MSTB LTR MaLR 1 426 0 3022 269 28 22 chrY 3942198 3942946 -47570638 - L1PBb LINE L1 -4118 2085 1318 4671 105 44 31 chrY 3942970 3944071 -47569513 + MER11A LTR ERVK 1 1071 0 1231 284 50 13 chrY 3944081 3945048 -47568536 - L1PBb LINE L1 -4995 1209 347 345 366 6 6 chrY 3945166 3945338 -47568246 - L1PBb LINE L1 -5848 356 185 347 309 67 43 chrY 3945485 3945695 -47567889 - L1PBa LINE L1 -5220 1643 1429 281 448 15 8 chrY 3945750 3946143 -47567441 - L1PBa LINE L1 -6397 466 71 3940 137 15 122 chrY 3946143 3947696 -47565888 - pTR5 LTR ERV1 0 2606 1524 471 213 158 55 chrY 3948689 3948961 -47564623 - L1ME1 LINE L1 -8 6158 5859 26 30 0 0 chrY 3948983 3949016 -47564568 + AT_rich Low_complexity Low_complexity 1 33 0 26 82 0 0 chrY 3949963 3950024 -47563560 + AT_rich Low_complexity Low_complexity 1 61 0 29 0 0 0 chrY 3950237 3950266 -47563318 + AT_rich Low_complexity Low_complexity 1 29 0 2305 137 58 35 chrY 3950421 3950940 -47562644 - MLT2A2 LTR ERVL 0 554 2 8084 216 28 27 chrY 3951465 3953659 -47559925 + L1M2 LINE L1 3289 5490 -743 499 227 10 0 chrY 3953660 3953757 -47559827 + L1MCa LINE L1 407 504 -5922 1918 240 79 15 chrY 3953758 3953799 -47559785 - MLT2B3 LTR ERVL 0 554 517 320 0 25 0 chrY 3953799 3953839 -47559745 + (GA)n Simple_repeat Simple_repeat 2 42 0 1918 240 79 15 chrY 3953839 3954317 -47559267 - MLT2B3 LTR ERVL -37 517 2 7626 226 51 44 chrY 3954318 3957250 -47556334 - ERVL LTR ERVL -7 5757 2813 332 182 40 7 chrY 3957250 3957398 -47556186 + (TA)n Simple_repeat Simple_repeat 1 153 0 29 70 0 0 chrY 3957737 3957794 -47555790 + AT_rich Low_complexity Low_complexity 1 57 0 23 0 0 0 chrY 3958496 3958519 -47555065 + AT_rich Low_complexity Low_complexity 1 23 0 21 57 0 0 chrY 3958540 3958575 -47555009 + AT_rich Low_complexity Low_complexity 1 35 0 23 54 0 0 chrY 3958775 3958812 -47554772 + AT_rich Low_complexity Low_complexity 1 37 0 465 315 83 0 chrY 3958833 3959014 -47554570 - MIR SINE MIR -18 244 49 532 359 86 10 chrY 3959082 3959650 -47553934 - L2 LINE L2 -60 3253 2636 388 318 183 8 chrY 3959657 3959909 -47553675 - L2 LINE L2 -900 2414 2119 261 0 0 0 chrY 3960156 3960185 -47553399 + (TG)n Simple_repeat Simple_repeat 2 30 0 184 170 38 0 chrY 3960551 3960604 -47552980 + (TA)n Simple_repeat Simple_repeat 1 55 0 291 159 14 29 chrY 3960665 3960734 -47552850 - L1PA16 LINE L1 -1 7603 7536 12132 242 35 22 chrY 3960735 3964392 -47549192 - L1PA16 LINE L1 -105 7499 3750 2500 146 26 5 chrY 3964392 3964811 -47548773 + MSTA LTR MaLR 1 428 0 12132 242 35 22 chrY 3964811 3966365 -47547219 - L1PA16 LINE L1 -3854 3750 2217 276 284 0 0 chrY 3966632 3966713 -47546871 - L1PA16 LINE L1 -5398 2183 2103 698 346 59 41 chrY 3966830 3967419 -47546165 - L1PA16 LINE L1 -6187 1387 788 424 325 102 35 chrY 3967445 3967759 -47545825 - L2 LINE L2 -1812 1502 1168 524 348 100 58 chrY 3967826 3968359 -47545225 - L2 LINE L2 -2509 805 243 318 98 0 0 chrY 3968359 3968410 -47545174 + (TG)n Simple_repeat Simple_repeat 1 51 0 524 348 100 58 chrY 3968410 3968465 -47545119 - L2 LINE L2 -3071 243 192 249 327 10 48 chrY 3968662 3968766 -47544818 + MER5A DNA MER1_type 90 189 0 315 141 70 14 chrY 3968796 3968867 -47544717 + L1MCa LINE L1 1990 2064 -4362 * 331 306 10 0 chrY 3968821 3968919 -47544665 - L1MC4 LINE L1 -1340 6702 6604 27 0 0 0 chrY 3969011 3969038 -47544546 + AT_rich Low_complexity Low_complexity 1 27 0 442 281 73 37 chrY 3969358 3969604 -47543980 - MIR SINE MIR -3 259 5 30 27 0 0 chrY 3970296 3970333 -47543251 + AT_rich Low_complexity Low_complexity 1 37 0 1485 217 0 11 chrY 3970863 3971161 -47542423 - AluJo SINE Alu 0 307 13 632 241 88 72 chrY 3972213 3972656 -47540928 - L1MC4 LINE L1 -130 7912 7357 484 258 7 13 chrY 3972982 3973133 -47540451 + L1PBa LINE L1 43 192 -6671 25 65 0 0 chrY 3973444 3973490 -47540094 + AT_rich Low_complexity Low_complexity 1 46 0 24 53 0 0 chrY 3973674 3973712 -47539872 + AT_rich Low_complexity Low_complexity 1 38 0 3645 186 33 12 chrY 3973867 3974619 -47538965 - L1MB1 LINE L1 0 5992 5225 5073 230 49 19 chrY 3975087 3975792 -47537792 - L1MB1 LINE L1 -1188 4782 4099 2020 100 4 7 chrY 3975792 3976091 -47537493 + AluSc SINE Alu 1 298 0 5073 230 49 19 chrY 3976091 3976804 -47536780 - L1MB1 LINE L1 -1871 4099 3321 988 327 22 58 chrY 3976900 3977401 -47536183 - L1MB1 LINE L1 -5406 485 3 3018 181 34 47 chrY 3977603 3978303 -47535281 - LTR8 LTR ERV1 0 691 1 25 83 0 0 chrY 3979129 3979189 -47534395 + AT_rich Low_complexity Low_complexity 1 60 0 328 271 177 44 chrY 3979479 3979661 -47533923 - MLT1J LTR MaLR -89 526 238 447 331 54 29 chrY 3979978 3980220 -47533364 - MIR SINE MIR -12 250 3 1704 304 30 18 chrY 3980406 3980508 -47533076 - MLT1H1 LTR MaLR 0 555 456 1508 245 58 36 chrY 3980508 3981039 -47532545 - MER67A LTR ERV1 0 543 1 1704 304 30 18 chrY 3981039 3981479 -47532105 - MLT1H1 LTR MaLR -99 456 7 250 191 12 36 chrY 3981783 3981867 -47531717 + (TTATA)n Simple_repeat Simple_repeat 4 85 0 198 0 0 0 chrY 3983334 3983356 -47530228 + (T)n Simple_repeat Simple_repeat 1 22 0 1375 337 65 27 chrY 3984126 3984942 -47528642 + ERVL LTR ERVL 3645 4491 -1273 896 335 46 27 chrY 3985108 3985754 -47527830 + ERVL LTR ERVL 4681 5333 -321 1711 303 30 10 chrY 3985939 3986447 -47527137 + LTR33 LTR ERVL 3 520 -1 12147 74 8 1 chrY 3986762 3989203 -47524381 + L1PA6 LINE L1 3725 6176 0 213 39 0 0 chrY 3990628 3990654 -47522930 + (TTTTG)n Simple_repeat Simple_repeat 4 29 0 206 229 21 21 chrY 3991660 3991708 -47521876 + L2 LINE L2 2734 2781 -533 297 0 0 0 chrY 3991760 3991793 -47521791 + (TC)n Simple_repeat Simple_repeat 1 33 0 270 0 0 0 chrY 3991792 3991822 -47521762 + (CA)n Simple_repeat Simple_repeat 1 30 0 * 201 94 0 0 chrY 3991911 3991943 -47521641 + (TG)n Simple_repeat Simple_repeat 2 33 0 444 67 0 0 chrY 3991952 3992012 -47521572 + (GGA)n Simple_repeat Simple_repeat 1 60 0 417 312 7 35 chrY 3992117 3992258 -47521326 - MIR SINE MIR -99 163 27 219 114 0 0 chrY 3993227 3993262 -47520322 + (TG)n Simple_repeat Simple_repeat 2 36 0 252 0 0 0 chrY 3993888 3993916 -47519668 + (A)n Simple_repeat Simple_repeat 1 28 0 21 0 0 0 chrY 3994544 3994565 -47519019 + AT_rich Low_complexity Low_complexity 1 21 0 365 304 8 8 chrY 3996030 3996155 -47517429 - L1ME1 LINE L1 -21 6145 6021 274 390 43 0 chrY 3996257 3996398 -47517186 + L2 LINE L2 1061 1207 -2107 23 0 0 0 chrY 3997783 3997806 -47515778 + AT_rich Low_complexity Low_complexity 1 23 0 1811 123 0 0 chrY 3999076 3999336 -47514248 - MER4D LTR ERV1 -2 870 611 1553 175 11 15 chrY 3999336 3999610 -47513974 - AluJb SINE Alu -39 273 1 269 297 28 28 chrY 3999625 3999770 -47513814 - L1ME LINE L1 -4598 1663 1519 377 289 69 19 chrY 3999789 3999948 -47513636 - L1ME LINE L1 -4670 1410 1244 612 249 92 59 chrY 3999980 4000318 -47513266 - L1ME LINE L1 -4817 1263 880 315 314 114 0 chrY 4000343 4000483 -47513101 - L1ME LINE L1 -5379 691 536 988 349 52 9 chrY 4000488 4000628 -47512956 - L1ME LINE L1 -5580 490 358 2002 82 86 0 chrY 4000628 4000907 -47512677 - AluSq SINE Alu -10 303 1 988 349 52 9 chrY 4000907 4001225 -47512359 - L1ME LINE L1 -5712 358 12 236 284 78 78 chrY 4001379 4001481 -47512103 + L3 LINE CR1 1329 1430 -147 185 265 20 0 chrY 4001502 4001551 -47512033 - L2 LINE L2 -6 3266 3217 229 130 0 37 chrY 4002066 4002120 -47511464 - L1MC4 LINE L1 -1339 6703 6652 21 36 0 0 chrY 4002598 4002626 -47510958 + AT_rich Low_complexity Low_complexity 1 28 0 5771 178 8 2 chrY 4003026 4004873 -47508711 - L1PB1 LINE L1 0 6867 5012 2664 201 42 0 chrY 4004871 4005393 -47508191 - L1PB1 LINE L1 -6188 675 132 * 21 36 0 0 chrY 4005416 4005444 -47508140 + AT_rich Low_complexity Low_complexity 1 28 0 1753 151 3 41 chrY 4005507 4005825 -47507759 - AluJo SINE Alu -6 306 1 836 189 13 6 chrY 4006143 4006302 -47507282 + MLT1E2 LTR MaLR 1 160 -466 1140 254 16 26 chrY 4006305 4006612 -47506972 + MLT1E2 LTR MaLR 319 622 -4 24 53 0 0 chrY 4007041 4007079 -47506505 + AT_rich Low_complexity Low_complexity 1 38 0 21 36 0 0 chrY 4008551 4008579 -47505005 + AT_rich Low_complexity Low_complexity 1 28 0 28 48 0 0 chrY 4008758 4008800 -47504784 + AT_rich Low_complexity Low_complexity 1 42 0 796 271 75 18 chrY 4010390 4010670 -47502914 - L2 LINE L2 -22 3291 2996 208 206 65 122 chrY 4010963 4011061 -47502523 - MIR3 SINE MIR -15 193 100 384 22 0 0 chrY 4011061 4011106 -47502478 + (TG)n Simple_repeat Simple_repeat 1 45 0 665 100 0 0 chrY 4011419 4011519 -47502065 - L1MA1 LINE L1 0 6302 6203 1841 233 51 70 chrY 4011652 4012280 -47501304 + MLT1E2 LTR MaLR 11 626 0 1726 126 11 0 chrY 4012869 4013147 -47500437 - L1PB1 LINE L1 -5 6146 5866 207 0 0 0 chrY 4013147 4013170 -47500414 + (AATAG)n Simple_repeat Simple_repeat 4 26 0 11901 218 32 32 chrY 4013182 4013477 -47500107 - L1P3 LINE L1 -2610 3851 3558 8286 47 2 0 chrY 4013477 4014441 -47499143 + LTR5 LTR ERVK 1 966 -3 11901 218 32 32 chrY 4014441 4016692 -47496892 - L1P3 LINE L1 -2903 3558 1291 189 0 0 0 chrY 4016692 4016713 -47496871 + (TTG)n Simple_repeat Simple_repeat 1 21 0 11901 218 32 32 chrY 4016713 4017982 -47495602 - L1P3 LINE L1 -5170 1291 24 1429 97 0 0 chrY 4017986 4018182 -47495402 - L1PA7 LINE L1 0 6154 5959 28341 131 15 34 chrY 4018182 4023668 -47489916 - L1P3 LINE L1 -910 5551 10 1023 298 63 22 chrY 4025298 4025708 -47487876 - MLT1J2 LTR MaLR -19 431 5 624 109 33 0 chrY 4025777 4025869 -47487715 - THE1B LTR MaLR -13 351 257 1352 209 8 4 chrY 4026802 4027051 -47486533 - AluJb SINE Alu -30 282 33 1795 168 18 3 chrY 4027060 4027345 -47486239 - AluSx SINE Alu -15 297 9 1882 121 0 8 chrY 4027729 4027994 -47485590 - AluSg SINE Alu -13 297 35 1463 183 61 4 chrY 4028079 4028341 -47485243 + AluSx SINE Alu 21 297 -15 626 231 49 0 chrY 4028343 4028486 -47485098 + Tigger2 DNA MER2_type 2566 2715 -3 1578 221 58 25 chrY 4028500 4028985 -47484599 + L1MB4 LINE L1 5679 6179 -1 1099 224 39 39 chrY 4029174 4029509 -47484075 - L1MB5 LINE L1 0 6174 5840 5027 181 38 11 chrY 4029525 4030506 -47483078 - L1MC1 LINE L1 -1 6332 5326 2080 119 0 10 chrY 4030508 4030802 -47482782 - AluSg SINE Alu -14 296 6 757 182 98 0 chrY 4030807 4030950 -47482634 - FRAM SINE Alu -5 161 5 442 213 103 13 chrY 4030950 4031105 -47482479 - L1MB5 LINE L1 -344 5830 5662 1920 147 0 7 chrY 4031107 4031429 -47482155 + AluSg SINE Alu 1 310 0 1194 265 78 23 chrY 4031463 4032255 -47481329 - L1MB5 LINE L1 -501 5673 4817 21 0 0 0 chrY 4032457 4032478 -47481106 + AT_rich Low_complexity Low_complexity 1 21 0 198 0 0 0 chrY 4033562 4033584 -47480000 + (TTTTA)n Simple_repeat Simple_repeat 2 23 0 38929 68 2 1 chrY 4033584 4039469 -47474115 - L1PA5 LINE L1 -11 6143 254 989 199 127 4 chrY 4039465 4039588 -47473996 - L1MB2 LINE L1 -106 6065 5943 * 293 251 108 36 chrY 4039588 4039738 -47473846 - L1MD1 LINE L1 -316 5926 5761 2048 110 119 3 chrY 4039738 4040074 -47473510 - MER51B LTR ERV1 -2 375 1 293 251 108 36 chrY 4040074 4040090 -47473494 - L1MD1 LINE L1 -481 5761 5748 7375 144 53 26 chrY 4040090 4041141 -47472443 - MER51B-int LTR ERV1 -15 7801 6780 2247 92 0 23 chrY 4041141 4041444 -47472140 - AluY SINE Alu -11 300 5 7375 144 53 26 chrY 4041444 4042361 -47471223 - MER51B-int LTR ERV1 -1036 6780 5551 1562 144 89 0 chrY 4042361 4042631 -47470953 - AluSg1 SINE Alu -15 294 1 7375 144 53 26 chrY 4042631 4042781 -47470803 - MER51B-int LTR ERV1 -2265 5551 5407 1800 131 20 9 chrY 4042758 4043155 -47470429 - MER51-int LTR ERV1 -2555 2662 2217 * 1734 150 73 34 chrY 4043167 4043604 -47469980 - MER51-int LTR ERV1 -2774 3172 1487 7489 124 77 15 chrY 4043607 4044333 -47469251 - MER51-int LTR ERV1 -4506 3310 2631 1920 183 93 30 chrY 4044333 4044793 -47468791 + LTR2B LTR ERV1 1 489 -1 7489 124 77 15 chrY 4044793 4045482 -47468102 - MER51-int LTR ERV1 -5185 2631 1807 660 166 50 68 chrY 4045483 4045682 -47467902 - MER4A LTR ERV1 -130 534 281 1088 152 25 0 chrY 4045739 4045937 -47467647 - MER51-int LTR ERV1 -6982 1138 936 1129 160 5 0 chrY 4045940 4046127 -47467457 - MER51-int LTR ERV1 -6593 1223 1036 * 3083 183 50 13 chrY 4046108 4046730 -47466854 - MER51-int LTR ERV1 -6996 820 176 262 263 0 26 chrY 4046752 4046828 -47466756 + HERVI LTR ERV1 101 174 -7611 320 317 4 8 chrY 4047754 4047896 -47465688 + GA-rich Low_complexity Low_complexity 1 239 0 3508 113 24 13 chrY 4047906 4048527 -47465057 + BaEV-int LTR ERV1 1919 2546 -4350 4117 288 46 42 chrY 4048703 4050400 -47463184 + BaEV-int LTR ERV1 4362 6064 -585 2955 83 21 3 chrY 4050650 4051165 -47462419 + LTR10C LTR ERV1 1 591 0 1199 81 5 48 chrY 4051165 4051351 -47462233 - MER51B-int LTR ERV1 -7638 178 1 2185 124 58 22 chrY 4051351 4051715 -47461869 - MER51B LTR ERV1 0 377 1 324 156 78 26 chrY 4051717 4051794 -47461790 - L1M3 LINE L1 -420 5763 5683 21 0 0 0 chrY 4051905 4051926 -47461658 + AT_rich Low_complexity Low_complexity 1 21 0 370 291 102 16 chrY 4054113 4054240 -47459344 - L2 LINE L2 -14 3299 3162 734 227 69 66 chrY 4054905 4055045 -47458539 - L1M4 LINE L1 -2444 3702 3564 1914 162 0 0 chrY 4055045 4055342 -47458242 - AluSc SINE Alu -11 298 2 734 227 69 66 chrY 4055342 4055518 -47458066 - L1M4 LINE L1 -2582 3564 3385 548 241 76 19 chrY 4055535 4055693 -47457891 - MER58A DNA MER1_type -16 208 42 944 280 78 28 chrY 4055768 4056001 -47457583 - L1M4 LINE L1 -2806 3340 3120 1113 279 49 14 chrY 4056001 4056428 -47457156 - LTR47B LTR ERVL -1 442 1 944 280 78 28 chrY 4056428 4056794 -47456790 - L1M4 LINE L1 -3026 3120 2711 295 244 13 0 chrY 4056991 4057069 -47456515 - MER116 DNA Mariner -1 79 1 660 216 7 15 chrY 4057994 4058168 -47455416 + L1MB3 LINE L1 5925 6095 -88 27 29 0 0 chrY 4058633 4058667 -47454917 + AT_rich Low_complexity Low_complexity 1 34 0 21 0 0 0 chrY 4059476 4059497 -47454087 + AT_rich Low_complexity Low_complexity 1 21 0 6608 80 0 4 chrY 4059499 4061212 -47452372 - L1PA7 LINE L1 -3 6151 4440 6325 207 38 20 chrY 4061229 4061952 -47451632 - L1PA7 LINE L1 -2550 3596 2888 2040 141 3 0 chrY 4061952 4062258 -47451326 - AluSc SINE Alu -2 307 1 6325 207 38 20 chrY 4062258 4063054 -47450530 - L1PA7 LINE L1 -3258 2888 2049 483 231 0 60 chrY 4063228 4063345 -47450239 + FRAM SINE Alu 48 157 -19 1689 206 16 32 chrY 4063366 4063739 -47449845 - Tigger2 DNA MER2_type -1987 731 365 1482 219 13 3 chrY 4063798 4064100 -47449484 - AluJo SINE Alu -1 311 7 1293 196 34 44 chrY 4064106 4064489 -47449095 - Tigger2 DNA MER2_type -2338 380 2 2883 227 36 46 chrY 4065297 4066368 -47447216 - L1MA6 LINE L1 0 6300 5289 217 184 20 0 chrY 4066519 4066568 -47447016 + (TTTA)n Simple_repeat Simple_repeat 3 52 0 463 228 10 18 chrY 4066840 4067005 -47446579 - L1M3 LINE L1 -646 5534 5374 400 265 17 2 chrY 4067167 4067289 -47446295 + MER5A DNA MER1_type 3 138 -51 238 153 38 76 chrY 4067597 4067754 -47445830 + (TATAA)n Simple_repeat Simple_repeat 4 154 0 * 365 128 50 67 chrY 4067666 4067846 -47445738 + (TTATA)n Simple_repeat Simple_repeat 3 179 0 339 186 43 37 chrY 4067858 4068019 -47445565 + (TATAA)n Simple_repeat Simple_repeat 3 164 0 30 0 0 0 chrY 4068045 4068075 -47445509 + AT_rich Low_complexity Low_complexity 1 30 0 337 214 52 23 chrY 4068075 4068248 -47445336 + (TATAA)n Simple_repeat Simple_repeat 2 179 0 269 199 30 23 chrY 4068315 4068446 -47445138 + (TTATA)n Simple_repeat Simple_repeat 3 134 0 40 37 0 0 chrY 4068654 4068708 -47444876 + AT_rich Low_complexity Low_complexity 1 54 0 972 230 19 5 chrY 4068848 4069057 -47444527 + AluJo SINE Alu 11 222 -90 312 281 61 0 chrY 4069058 4069140 -47444444 + AluJo SINE Alu 89 175 -127 973 246 11 8 chrY 4069143 4069403 -47444181 + AluJo SINE Alu 44 304 -8 288 291 101 7 chrY 4069413 4069561 -47444023 + L1M4 LINE L1 5 166 -6376 684 285 63 0 chrY 4069649 4069856 -47443728 - MER58A DNA MER1_type -4 220 1 641 190 0 36 chrY 4069917 4070054 -47443530 - FLAM_C SINE Alu -1 142 11 265 271 0 12 chrY 4070748 4070833 -47442751 - L1M4 LINE L1 -6376 166 83 2107 133 0 7 chrY 4071013 4071314 -47442270 - AluSq SINE Alu -14 299 1 1450 212 0 19 chrY 4071498 4071814 -47441770 - AluJo SINE Alu 0 312 3 610 276 109 0 chrY 4073004 4073196 -47440388 - MER20 DNA MER1_type -6 213 1 30 0 0 0 chrY 4073225 4073255 -47440329 + AT_rich Low_complexity Low_complexity 1 30 0 238 270 87 8 chrY 4073514 4073640 -47439944 - L1ME4a LINE L1 -19 6102 5967 184 309 36 0 chrY 4073779 4073834 -47439750 - L2 LINE L2 -22 3250 3194 292 245 167 52 chrY 4075422 4075614 -47437970 - MER41C LTR ERV1 -340 214 1 1259 254 17 17 chrY 4075661 4076020 -47437564 - MLT1A1 LTR MaLR -6 359 1 753 224 49 2 chrY 4076359 4076553 -47437031 + MER20 DNA MER1_type 1 219 0 642 236 10 51 chrY 4076825 4077020 -47436564 - MER5A DNA MER1_type -2 187 1 21 36 0 0 chrY 4078036 4078064 -47435520 + AT_rich Low_complexity Low_complexity 1 28 0 33561 107 14 13 chrY 4078451 4084572 -47429012 + L1PA6 LINE L1 11 6137 -17 210 129 48 0 chrY 4084575 4084637 -47428947 + (TA)n Simple_repeat Simple_repeat 2 66 0 5145 100 48 7 chrY 4084641 4085449 -47428135 + L1PA7 LINE L1 5313 6153 -1 213 167 24 0 chrY 4085763 4085805 -47427779 + (TA)n Simple_repeat Simple_repeat 1 43 0 1359 188 22 16 chrY 4085887 4086201 -47427383 - L1MA8 LINE L1 -22 6269 5954 521 161 21 0 chrY 4086201 4086294 -47427290 - MER66A LTR ERV1 0 478 384 10745 202 54 27 chrY 4086317 4089096 -47424488 - L1PB1 LINE L1 -5 6862 4160 2317 108 0 0 chrY 4089096 4089391 -47424193 + AluY SINE Alu 1 295 -16 10745 202 54 27 chrY 4089391 4092551 -47421033 - L1PB1 LINE L1 -2707 4160 621 823 176 28 34 chrY 4092551 4092727 -47420857 - HUERS-P3b LTR ERV1 -1382 6036 5862 235 307 117 24 chrY 4093040 4093245 -47420339 + L2 LINE L2 1758 1981 -1333 418 342 22 19 chrY 4093290 4093559 -47420025 + HERVI LTR ERV1 7378 7647 -138 2157 95 0 55 chrY 4095368 4095719 -47417865 - AluY SINE Alu 0 333 1 859 112 32 14 chrY 4095906 4096201 -47417383 + CT-rich Low_complexity Low_complexity 1 300 0 754 273 19 0 chrY 4096209 4096414 -47417170 - MER58A DNA MER1_type -12 212 4 287 304 78 17 chrY 4096514 4096629 -47416955 + FLAM_A SINE Alu 2 123 -10 2124 117 4 0 chrY 4097210 4097516 -47416068 + AluSq SINE Alu 1 307 0 349 325 42 0 chrY 4098352 4098472 -47415112 - L2 LINE L2 -3 3310 3186 323 387 43 18 chrY 4098538 4098866 -47414718 - L2 LINE L2 -1172 2142 1807 1555 234 47 20 chrY 4099295 4099740 -47413844 + MSTB2 LTR MaLR 1 457 0 277 205 55 16 chrY 4100206 4100333 -47413251 + (TA)n Simple_repeat Simple_repeat 1 132 0 22 35 0 0 chrY 4101260 4101289 -47412295 + AT_rich Low_complexity Low_complexity 1 29 0 30 27 0 0 chrY 4101325 4101362 -47412222 + AT_rich Low_complexity Low_complexity 1 37 0 2549 111 22 3 chrY 4101781 4102149 -47411435 + THE1C LTR MaLR 1 375 0 3057 162 62 29 chrY 4102861 4103489 -47410095 - MER39B LTR ERV1 -4 649 1 373 267 163 12 chrY 4103644 4103816 -47409768 + MIR SINE MIR 58 255 -7 874 174 41 5 chrY 4103975 4104193 -47409391 - L1MA7 LINE L1 -11 6280 6055 239 262 0 0 chrY 4104319 4104380 -47409204 + MIR SINE MIR 199 259 -3 1517 143 57 0 chrY 4104444 4104709 -47408875 + MER7A DNA MER2_type 1 278 -68 499 174 54 0 chrY 4104801 4104893 -47408691 + MER7A DNA MER2_type 249 345 -1 25630 135 18 15 chrY 4105437 4111843 -47401741 - L1PA7 LINE L1 -1 6468 11 306 187 88 0 chrY 4111841 4111932 -47401652 - L1M4 LINE L1 -807 5339 5241 * 267 324 43 22 chrY 4112816 4112955 -47400629 - MIR3 SINE MIR -14 194 53 31 26 0 0 chrY 4113579 4113617 -47399967 + AT_rich Low_complexity Low_complexity 1 38 0 351 282 6 61 chrY 4114823 4114986 -47398598 - MER20 DNA MER1_type -64 155 2 190 268 0 54 chrY 4115626 4115682 -47397902 - MIR SINE MIR -140 122 70 1307 92 10 10 chrY 4116809 4117015 -47396569 - L1PA8A LINE L1 -223 6223 6018 29709 41 15 1 chrY 4117022 4123037 -47390547 + L1PA3 LINE L1 8 6155 0 19546 145 15 96 chrY 4123042 4125717 -47387867 - L1PA8A LINE L1 -416 6030 3575 2086 127 105 8 chrY 4125717 4126118 -47387466 - LTR7 LTR ERV1 -10 440 1 19546 145 15 96 chrY 4126118 4128329 -47385255 - L1PA8A LINE L1 -2871 3575 1187 4880 160 25 25 chrY 4128333 4129268 -47384316 - L1PA8A LINE L1 -4736 1139 205 313 281 116 30 chrY 4130894 4131058 -47382526 - MIR SINE MIR 0 262 85 1951 157 0 37 chrY 4131219 4131544 -47382040 - AluSq SINE Alu 0 313 1 221 335 40 40 chrY 4131657 4131809 -47381775 - MIR3 SINE MIR -27 181 30 184 333 0 19 chrY 4132053 4132107 -47381477 - MIR3 SINE MIR -13 195 143 421 341 52 6 chrY 4133521 4133694 -47379890 - MIR SINE MIR -10 252 72 227 328 42 25 chrY 4134116 4134235 -47379349 - MIR SINE MIR -56 206 86 273 282 28 0 chrY 4134649 4134720 -47378864 + GA-rich Low_complexity Low_complexity 6 78 0 2158 97 0 7 chrY 4136266 4136589 -47376995 + AluSc SINE Alu 1 309 0 304 282 32 34 chrY 4136635 4136753 -47376831 + MER5A DNA MER1_type 21 128 -50 28 29 0 0 chrY 4136753 4136788 -47376796 + AT_rich Low_complexity Low_complexity 1 35 0 425 155 0 0 chrY 4136796 4136880 -47376704 - L1MA7 LINE L1 -19 6272 6189 427 245 0 0 chrY 4136880 4136982 -47376602 + L1MB1 LINE L1 5795 5896 -293 375 277 40 0 chrY 4139790 4139891 -47373693 + MIR SINE MIR 88 192 -70 272 26 0 26 chrY 4140392 4140430 -47373154 + (TTTTA)n Simple_repeat Simple_repeat 3 39 0 972 338 57 7 chrY 4140909 4141367 -47372217 + L1M2 LINE L1 1 481 -6368 2804 290 68 21 chrY 4141691 4142553 -47371031 + L1M2 LINE L1 662 1581 -5268 243 0 0 0 chrY 4142553 4142580 -47371004 + (TG)n Simple_repeat Simple_repeat 2 28 0 2804 290 68 21 chrY 4142580 4142738 -47370846 + L1M2 LINE L1 1581 1730 -5119 6782 39 1 7 chrY 4143493 4144781 -47368803 - L1P2 LINE L1 -377 5778 4501 702 242 108 0 chrY 4144785 4145016 -47368568 + L1PA15 LINE L1 2584 2839 -4010 5040 122 2 1 chrY 4145018 4145852 -47367732 - L1P LINE L1 -2396 3750 2916 10432 104 8 0 chrY 4145852 4148190 -47365394 + L1PA7 LINE L1 3809 6153 -1 489 157 172 8 chrY 4148495 4148629 -47364955 + MER53 DNA DNA 1 156 -33 2483 87 55 11 chrY 4148642 4149056 -47364528 + L1PA7 LINE L1 5752 6154 0 1174 267 8 3 chrY 4149060 4149416 -47364168 + L1PA15 LINE L1 2832 3189 -3660 * 3880 209 15 25 chrY 4149409 4149786 -47363798 + L1PA15 LINE L1 5931 6310 -558 2212 89 14 0 chrY 4149786 4150066 -47363518 + AluY SINE Alu 1 284 -27 3880 209 15 25 chrY 4150066 4150636 -47362948 + L1PA15 LINE L1 6310 6868 0 994 283 101 42 chrY 4150627 4150979 -47362605 + L1M4c LINE L1 820 1150 -5234 * 1273 272 3 3 chrY 4150979 4151280 -47362304 + AluJo SINE Alu 1 301 -11 994 283 101 42 chrY 4151280 4151893 -47361691 + L1M4c LINE L1 1150 1842 -4542 360 260 65 53 chrY 4151910 4152079 -47361505 + L1M4c LINE L1 1965 2135 -4249 4394 132 53 12 chrY 4152112 4152918 -47360666 - L1PA8 LINE L1 -1 6171 5333 2965 88 13 119 chrY 4152918 4153176 -47360408 + HUERS-P1 LTR ERV1 3649 3933 -2330 2028 160 7 0 chrY 4153176 4153482 -47360102 + AluSx SINE Alu 1 308 -4 2965 88 13 119 chrY 4153482 4153516 -47360068 + HUERS-P1 LTR ERV1 3933 3969 -2294 1866 174 3 0 chrY 4153516 4153815 -47359769 + AluSg SINE Alu 6 305 -5 2965 88 13 119 chrY 4153815 4154088 -47359496 + HUERS-P1 LTR ERV1 3969 4148 -2115 2120 137 0 0 chrY 4154088 4154381 -47359203 + AluSg SINE Alu 1 293 -17 2965 88 13 119 chrY 4154381 4154427 -47359157 + HUERS-P1 LTR ERV1 4148 4197 -2066 771 239 0 0 chrY 4154430 4154585 -47358999 + AluJb SINE Alu 140 294 -18 250 261 45 3 chrY 4154598 4154722 -47358862 - MLT1E LTR MaLR -216 410 277 442 244 114 0 chrY 4154737 4154860 -47358724 - MLT1E LTR MaLR -434 159 23 1598 146 4 0 chrY 4155415 4155661 -47357923 + HERVS71 LTR ERV1 2692 2938 -6040 * 20755 183 17 4 chrY 4155658 4155684 -47357900 + HERVS71 LTR ERV1 5174 5198 -3780 3378 87 29 16 chrY 4155684 4156168 -47357416 + LTR2B LTR ERV1 1 490 0 20755 183 17 4 chrY 4156168 4159829 -47353755 + HERVS71 LTR ERV1 5198 8909 -69 2046 115 37 21 chrY 4159829 4160175 -47353409 + LTR6A LTR ERV1 1 316 -248 4397 65 7 0 chrY 4160175 4160791 -47352793 - L1P LINE L1 -1324 4822 4203 1148 203 0 5 chrY 4161144 4161341 -47352243 + AluJo SINE Alu 3 198 -114 432 175 0 12 chrY 4162082 4162162 -47351422 - AluS SINE Alu -226 87 9 1430 174 48 45 chrY 4162174 4162363 -47351221 - AluJo SINE Alu 0 312 120 2186 142 0 0 chrY 4162363 4162673 -47350911 - AluSx SINE Alu -2 310 1 1430 174 48 45 chrY 4162673 4162794 -47350790 - AluJo SINE Alu -192 120 1 1475 222 109 36 chrY 4162842 4163311 -47350273 - MLT2B1 LTR ERVL -15 505 3 562 198 9 0 chrY 4163313 4163429 -47350155 + MLT1D LTR MaLR 389 505 0 271 158 13 13 chrY 4163766 4163842 -47349742 - MER96B DNA MER1_type? -246 171 96 2220 94 3 26 chrY 4164032 4164341 -47349243 + AluSp SINE Alu 1 302 -11 1391 128 15 5 chrY 4164358 4164561 -47349023 + AluSx SINE Alu 6 210 -102 322 120 0 0 chrY 4164561 4164611 -47348973 + LTR22 LTR ERVK 1 50 -530 2555 182 19 39 chrY 4164611 4165199 -47348385 + LTR22 LTR ERVK 5 580 0 705 150 17 0 chrY 4165216 4165336 -47348248 + AluSx SINE Alu 187 308 -2 2388 83 0 0 chrY 4165433 4165723 -47347861 - AluY SINE Alu -13 298 9 304 145 16 0 chrY 4166067 4166129 -47347455 - MER96B DNA MER1_type? -306 111 49 2689 92 102 0 chrY 4166196 4166599 -47346985 - MLT2A1 LTR ERVL 0 444 1 3804 75 60 0 chrY 4166599 4167147 -47346437 - HERVL-A1 LTR ERVL 0 5654 5074 1404 150 0 61 chrY 4167147 4167306 -47346278 - AluSx SINE Alu -20 292 152 2108 138 0 3 chrY 4167306 4167604 -47345980 - AluSq SINE Alu -16 297 1 1404 150 0 61 chrY 4167604 4167690 -47345894 - AluSx SINE Alu -160 152 62 16645 94 5 2 chrY 4167690 4170018 -47343566 - HERVL LTR ERVL -566 5088 2754 768 129 26 13 chrY 4170018 4170173 -47343411 + CT-rich Low_complexity Low_complexity 3 159 0 2217 104 0 0 chrY 4170175 4170482 -47343102 - AluY SINE Alu -4 307 1 1881 176 30 30 chrY 4170501 4170864 -47342720 + THE1B LTR MaLR 2 364 0 322 271 0 62 chrY 4170912 4171008 -47342576 - L1MC4 LINE L1 -1339 6703 6614 220 138 0 52 chrY 4171008 4171066 -47342518 + (CATATA)n Simple_repeat Simple_repeat 6 60 0 446 232 32 32 chrY 4171086 4171211 -47342373 - FRAM SINE Alu -46 130 6 284 268 31 10 chrY 4171216 4171313 -47342271 - L1M4 LINE L1 -874 5272 5174 1339 145 21 21 chrY 4171347 4171589 -47341995 - AluSg SINE Alu -10 300 59 702 200 72 90 chrY 4171617 4171670 -47341914 - L1M4 LINE L1 -1014 5132 5080 1407 161 26 71 chrY 4171670 4171980 -47341604 + AluSq SINE Alu 1 296 -17 702 200 72 90 chrY 4171980 4172216 -47341368 - L1M4 LINE L1 -1066 5080 4848 715 221 221 5 chrY 4172220 4172428 -47341156 + AluJb SINE Alu 5 257 -55 1719 145 39 0 chrY 4172448 4172730 -47340854 - AluSx SINE Alu -19 293 1 1901 138 0 0 chrY 4172776 4173073 -47340511 + AluSx SINE Alu 15 311 -1 2029 127 3 0 chrY 4177137 4177444 -47336140 + AluSx SINE Alu 1 308 -4 264 265 118 0 chrY 4177571 4177673 -47335911 - L2 LINE L2 -5 3308 3195 216 330 110 9 chrY 4178152 4178261 -47335323 + MIR3 SINE MIR 66 185 -23 183 186 0 0 chrY 4178380 4178423 -47335161 + (TATATG)n Simple_repeat Simple_repeat 4 46 0 384 216 191 56 chrY 4178492 4178654 -47334930 - MER3 DNA MER1_type -17 192 9 1105 236 109 11 chrY 4178704 4178979 -47334605 + AluJo SINE Alu 1 302 0 1722 167 0 13 chrY 4178998 4179303 -47334281 + AluSx SINE Alu 3 303 -9 249 312 12 4 chrY 4179546 4179633 -47333951 + MIR SINE MIR 60 144 -64 612 124 21 0 chrY 4180950 4181047 -47332537 + AluSc SINE Alu 206 304 -5 1460 175 11 11 chrY 4181047 4181350 -47332234 + AluSq SINE Alu 21 323 0 631 248 23 61 chrY 4181432 4181646 -47331938 + MER20 DNA MER1_type 1 206 -13 1699 185 36 15 chrY 4181674 4182004 -47331580 + MER1B DNA MER1_type 1 337 0 1133 178 23 56 chrY 4182992 4183296 -47330288 - AluJo SINE Alu -7 305 12 1939 112 0 48 chrY 4183459 4183771 -47329813 - AluSg SINE Alu -13 297 1 268 257 82 105 chrY 4183815 4183986 -47329598 - L1ME1 LINE L1 -17 6149 5983 2343 218 26 14 chrY 4184034 4184533 -47329051 + LTR10B LTR ERV1 1 505 0 2713 118 56 12 chrY 4185614 4186028 -47327556 - LTR3 LTR ERVK 0 432 1 303 140 80 0 chrY 4186435 4186485 -47327099 - AluSc SINE Alu -10 289 236 4185 111 64 107 chrY 4186485 4187348 -47326236 - LTR12 LTR ERV1 0 826 1 764 210 52 52 chrY 4187428 4187714 -47325870 - pTR5 LTR ERV1 -1410 1028 743 1682 133 0 0 chrY 4187714 4187955 -47325629 - AluSx SINE Alu -71 241 1 1989 114 10 23 chrY 4188097 4188405 -47325179 - AluY SINE Alu -7 304 1 1196 217 72 40 chrY 4188429 4188706 -47324878 - AluJo SINE Alu -14 288 3 2392 77 3 3 chrY 4188895 4189206 -47324378 + AluY SINE Alu 1 311 0 1838 133 65 30 chrY 4189886 4190005 -47323579 + THE1B LTR MaLR 14 127 -237 1864 161 3 0 chrY 4190005 4190304 -47323280 - AluSg SINE Alu -10 300 1 1838 133 65 30 chrY 4190304 4190523 -47323061 + THE1B LTR MaLR 127 364 0 27 0 0 0 chrY 4190798 4190825 -47322759 + AT_rich Low_complexity Low_complexity 1 27 0 1683 166 11 0 chrY 4191175 4191489 -47322095 - AluSg SINE Alu 0 317 1 1730 179 7 0 chrY 4191525 4191816 -47321768 - AluSg SINE Alu -17 293 1 1590 162 20 20 chrY 4191816 4192113 -47321471 - AluSq SINE Alu -16 297 1 3317 198 130 28 chrY 4192936 4194314 -47319270 - MER52A LTR ERV1 0 1755 1 236 222 0 37 chrY 4195050 4195104 -47318480 + AluSg/x SINE Alu 116 167 -133 3734 94 322 0 chrY 4195104 4195729 -47317855 + LTR12 LTR ERV1 1 826 0 1715 137 7 28 chrY 4195729 4196014 -47317570 + AluSp SINE Alu 31 309 -4 623 208 58 79 chrY 4196947 4197058 -47316526 - L1MB8 LINE L1 -12 6166 6054 1920 139 3 3 chrY 4197058 4197361 -47316223 - AluSx SINE Alu -9 303 1 623 208 58 79 chrY 4197361 4197489 -47316095 - L1MB8 LINE L1 -124 6054 5932 1863 147 10 3 chrY 4197489 4197788 -47315796 - AluSx SINE Alu -11 301 1 263 132 0 0 chrY 4197962 4198000 -47315584 + MIR SINE MIR 118 155 -107 453 262 60 47 chrY 4198313 4198462 -47315122 + MER20 DNA MER1_type 66 216 -3 712 177 15 23 chrY 4199307 4199437 -47314147 - FLAM_C SINE Alu -10 133 5 830 189 36 106 chrY 4199442 4199743 -47313841 - AluJb SINE Alu -14 298 19 297 188 59 71 chrY 4199757 4199772 -47313812 - L1MA10 LINE L1 -82 6252 6238 893 268 70 41 chrY 4199772 4200160 -47313424 - L1ME1 LINE L1 -82 6084 5686 410 172 0 0 chrY 4200167 4200231 -47313353 - MER5A DNA MER1_type 0 189 126 885 211 119 8 chrY 4200243 4200504 -47313080 + AluJo SINE Alu 13 302 -10 401 305 21 28 chrY 4200516 4200657 -47312927 - MER5A DNA MER1_type -49 140 1 886 235 119 16 chrY 4201514 4201833 -47311751 - L1MB7 LINE L1 0 6184 5833 1661 181 7 0 chrY 4201877 4202164 -47311420 + AluSx SINE Alu 1 289 -23 1387 244 33 17 chrY 4202862 4203223 -47310361 - MLT1D LTR MaLR -2 503 137 2605 84 109 227 chrY 4203238 4204035 -47309549 - LTR12 LTR ERV1 -11 703 1 728 184 0 22 chrY 4204035 4204171 -47309413 - MLT1D LTR MaLR -371 134 2 1577 146 4 22 chrY 4204250 4204525 -47309059 - AluSp SINE Alu -2 311 42 1657 127 23 43 chrY 4204556 4204856 -47308728 + AluY SINE Alu 1 294 -17 198 0 0 0 chrY 4204930 4204952 -47308632 + (ATTG)n Simple_repeat Simple_repeat 3 24 0 576 154 0 86 chrY 4204969 4205086 -47308498 - FLAM_C SINE Alu -33 110 4 256 202 124 22 chrY 4205543 4205632 -47307952 - MLT1I LTR MaLR 0 409 312 1770 141 7 0 chrY 4205828 4206133 -47307451 + AluSq SINE Alu 1 307 0 1635 157 11 0 chrY 4206468 4206748 -47306836 + AluSx SINE Alu 6 288 -24 183 337 23 23 chrY 4207300 4207386 -47306198 - L2 LINE L2 -1526 1788 1703 670 248 7 7 chrY 4207425 4207570 -47306014 + FRAM SINE Alu 2 146 -30 815 232 11 11 chrY 4208004 4208181 -47305403 + MER8 DNA MER2_type 1 177 -62 250 178 22 0 chrY 4208367 4208412 -47305172 + MER3 DNA MER1_type 7 52 -157 212 373 32 0 chrY 4208476 4208602 -47304982 + (CACGC)n Simple_repeat Simple_repeat 4 133 0 1982 221 54 4 chrY 4208995 4209479 -47304105 - L1MB2 LINE L1 0 6171 5664 223 231 17 26 chrY 4209507 4209624 -47303960 + CT-rich Low_complexity Low_complexity 2 117 0 233 293 0 13 chrY 4209632 4209707 -47303877 + T-rich Low_complexity Low_complexity 3 76 0 402 217 18 44 chrY 4209708 4209998 -47303586 + CT-rich Low_complexity Low_complexity 1 282 0 845 238 24 24 chrY 4209998 4210250 -47303334 - AluJo SINE Alu -14 298 47 1444 136 15 133 chrY 4210912 4211051 -47302533 - MER4A LTR ERV1 0 664 585 1949 138 3 0 chrY 4211051 4211347 -47302237 - AluSx SINE Alu -15 297 1 1444 136 15 133 chrY 4211347 4211539 -47302045 - MER4A LTR ERV1 -79 585 372 462 135 112 0 chrY 4211591 4211680 -47301904 - MER4A LTR ERV1 -565 99 1 3194 136 83 14 chrY 4211681 4212270 -47301314 - MER4A-int LTR ERV1 0 6598 5969 1832 118 13 30 chrY 4212975 4213280 -47300304 + AluY SINE Alu 1 300 -11 285 62 0 62 chrY 4215337 4215385 -47298199 - L1PA5 LINE L1 -3 6151 6107 * 30772 71 8 1 chrY 4215383 4219387 -47294197 - L1P LINE L1 -2105 4041 11 1320 194 7 7 chrY 4220359 4220632 -47292952 - BaEV-int LTR ERV1 -4878 1771 1499 * 2429 233 19 2 chrY 4220626 4221145 -47292439 + BaEV-int LTR ERV1 2629 3156 -3740 4417 272 36 45 chrY 4221316 4222987 -47290597 + BaEV-int LTR ERV1 4991 6646 -3 3571 203 23 67 chrY 4222988 4224002 -47289582 - LTR5 LTR ERVK 0 969 1 10341 177 5 8 chrY 4224007 4225775 -47287809 - HERVK LTR ERVK -5 7238 5533 273 319 39 39 chrY 4225743 4225925 -47287659 - HERVK LTR ERVK -735 5181 5000 * 11552 108 4 2 chrY 4226019 4227630 -47285954 - HERVK LTR ERVK -1720 5523 3911 11508 198 15 24 chrY 4227622 4229932 -47283652 - HERVK LTR ERVK -4424 2819 531 * 1233 155 50 17 chrY 4229932 4230215 -47283369 + LTR10A LTR ERV1 290 609 0 675 291 0 0 chrY 4230228 4230403 -47283181 + BaEV-int LTR ERV1 7388 7562 -223 370 179 0 51 chrY 4230421 4230499 -47283085 - MER4A LTR ERV1 -203 461 388 1947 129 56 0 chrY 4230656 4230943 -47282641 - AluSx SINE Alu -9 303 1 207 0 0 0 chrY 4231422 4231445 -47282139 + (TC)n Simple_repeat Simple_repeat 2 24 0 2021 134 17 0 chrY 4231983 4232273 -47281311 - AluSq SINE Alu -18 295 1 365 111 0 0 chrY 4232284 4232338 -47281246 - AluSp/q SINE Alu -6 297 244 1547 227 20 6 chrY 4232473 4232825 -47280759 - MLT1B LTR MaLR -16 374 18 1188 170 65 0 chrY 4232839 4233069 -47280515 + L1MB7 LINE L1 5931 6175 -9 248 203 78 0 chrY 4234422 4234486 -47279098 - L1MB8 LINE L1 -13 6165 6097 432 227 10 0 chrY 4234704 4234801 -47278783 - L1MB1 LINE L1 -159 6009 5912 196 119 48 24 chrY 4234803 4234845 -47278739 + MIR SINE MIR 184 226 -36 203 0 0 36 chrY 4234872 4234900 -47278684 + (TTTA)n Simple_repeat Simple_repeat 1 27 0 1814 165 0 0 chrY 4234901 4235180 -47278404 - AluSx SINE Alu -33 279 1 315 179 0 0 chrY 4236152 4236219 -47277365 + GA-rich Low_complexity Low_complexity 1 67 0 1694 182 0 0 chrY 4236221 4236496 -47277088 - AluSx SINE Alu -36 276 2 240 220 18 101 chrY 4236500 4236609 -47276975 - MER69 DNA AcHobo -264 2262 2163 242 229 0 0 chrY 4236932 4236980 -47276604 - MER69 DNA AcHobo -841 385 338 328 175 0 16 chrY 4238608 4238671 -47274913 + MER20 DNA MER1_type 112 173 -46 860 138 0 0 chrY 4238844 4238960 -47274624 - AluSp SINE Alu -197 116 1 375 41 0 0 chrY 4240491 4240540 -47273044 + (TG)n Simple_repeat Simple_repeat 1 49 0 1701 168 7 11 chrY 4240542 4240822 -47272762 - AluSx SINE Alu -33 279 1 480 235 0 20 chrY 4242008 4242110 -47271474 - MER20 DNA MER1_type -114 105 6 2043 121 4 0 chrY 4243507 4243818 -47269766 - AluSg SINE Alu 0 314 3 975 201 66 8 chrY 4244221 4244275 -47269309 - MSTA LTR MaLR -173 253 204 1828 153 39 0 chrY 4244275 4244556 -47269028 - AluSx SINE Alu -20 292 1 975 201 66 8 chrY 4244556 4244740 -47268844 - MSTA LTR MaLR -222 204 3 832 208 104 6 chrY 4245427 4245610 -47267974 - MER3 DNA MER1_type -1 208 8 239 281 144 50 chrY 4245749 4245888 -47267696 + HAL1 LINE L1 1383 1534 -973 618 290 79 105 chrY 4246040 4246761 -47266823 + HAL1 LINE L1 1618 2313 -194 1248 207 32 25 chrY 4246761 4247062 -47266522 + AluJo SINE Alu 1 303 0 618 290 79 105 chrY 4247062 4247252 -47266332 + HAL1 LINE L1 2313 2506 -1 1941 123 3 72 chrY 4247318 4247650 -47265934 + MER1B DNA MER1_type 31 339 0 517 226 19 0 chrY 4247708 4247814 -47265770 - MER20 DNA MER1_type -111 108 1 201 261 108 0 chrY 4248330 4248395 -47265189 - MIR3 SINE MIR -28 180 109 641 210 0 0 chrY 4249479 4249603 -47263981 + FLAM_C SINE Alu 2 125 -8 743 238 53 5 chrY 4249915 4250121 -47263463 + MER20 DNA MER1_type 1 216 -3 190 254 111 0 chrY 4250200 4250263 -47263321 + L2 LINE L2 2267 2336 -978 1512 197 14 24 chrY 4250830 4251125 -47262459 + AluJo SINE Alu 1 292 -20 1762 165 62 9 chrY 4251408 4251730 -47261854 - MER47A DNA MER2_type -27 339 1 966 259 139 32 chrY 4251734 4251883 -47261701 - L1MD2 LINE L1 -227 6132 6000 1846 156 6 29 chrY 4251883 4252198 -47261386 - AluSq SINE Alu -5 308 1 966 259 139 32 chrY 4252198 4252422 -47261162 - L1MD2 LINE L1 -359 6000 5719 1922 149 0 17 chrY 4252969 4253299 -47260285 + AluJb SINE Alu 5 312 0 414 209 70 31 chrY 4253469 4253563 -47260021 + MER3 DNA MER1_type 76 178 -31 1722 104 108 4 chrY 4253563 4253814 -47259770 + AluY SINE Alu 21 297 -14 414 209 70 31 chrY 4253814 4253848 -47259736 + MER3 DNA MER1_type 178 209 0 550 217 133 59 chrY 4253991 4254194 -47259390 + MER20 DNA MER1_type 2 219 0 666 214 0 0 chrY 4254746 4254863 -47258721 - FRAM SINE Alu -14 162 46 2514 78 3 0 chrY 4255136 4255445 -47258139 - AluY SINE Alu -1 310 1 837 234 155 71 chrY 4256008 4256362 -47257222 + MLT1B LTR MaLR 1 384 -6 1698 193 24 26 chrY 4256784 4257162 -47256422 - MLT1C LTR MaLR -90 377 1 639 0 0 0 chrY 4257778 4257849 -47255735 + (TTTC)n Simple_repeat Simple_repeat 2 72 0 23 0 0 0 chrY 4257958 4257981 -47255603 + AT_rich Low_complexity Low_complexity 1 23 0 1956 114 30 3 chrY 4257982 4258280 -47255304 - L1PA10 LINE L1 -6 6162 5857 872 228 185 26 chrY 4259490 4259880 -47253704 - MLT1C LTR MaLR -15 452 1 1188 118 0 12 chrY 4260173 4260343 -47253241 - AluSq SINE Alu -14 299 132 189 0 0 0 chrY 4260366 4260387 -47253197 + (T)n Simple_repeat Simple_repeat 1 21 0 2269 99 3 17 chrY 4261012 4261314 -47252270 + AluSp SINE Alu 2 299 -14 1798 173 0 7 chrY 4261722 4262017 -47251567 + AluSx SINE Alu 1 293 -19 918 177 72 29 chrY 4262417 4262626 -47250958 - MLT1F1 LTR MaLR 0 567 350 874 214 85 10 chrY 4262992 4263193 -47250391 + AluJo SINE Alu 85 300 -12 189 175 0 0 chrY 4264219 4264259 -47249325 + T-rich Low_complexity Low_complexity 5 44 0 299 170 0 19 chrY 4264317 4264370 -47249214 + CT-rich Low_complexity Low_complexity 3 54 0 311 119 0 34 chrY 4264372 4264431 -47249153 + (TCCCC)n Simple_repeat Simple_repeat 3 59 0 1919 161 0 0 chrY 4265197 4265488 -47248096 - AluSx SINE Alu -21 291 1 2409 93 0 0 chrY 4265926 4266227 -47247357 + AluY SINE Alu 1 301 -10 381 283 141 23 chrY 4266771 4267153 -47246431 - L2 LINE L2 -89 3224 2792 515 251 103 56 chrY 4267159 4267552 -47246032 - LTR15 LTR ERV1 -4 530 149 201 306 89 8 chrY 4268003 4268127 -47245457 - L2 LINE L2 -939 2375 2242 1299 218 150 8 chrY 4269013 4269394 -47244190 - L1MB4 LINE L1 -176 6004 5570 591 309 65 0 chrY 4269474 4269675 -47243909 + MER58B DNA MER1_type 15 228 -113 1434 230 3 3 chrY 4269740 4270031 -47243553 + AluJb SINE Alu 6 296 -16 23 33 0 0 chrY 4270495 4270525 -47243059 + AT_rich Low_complexity Low_complexity 1 30 0 4496 45 2 2 chrY 4270896 4271454 -47242130 + L1P LINE L1 4839 5396 -750 232 176 0 20 chrY 4272016 4272055 -47241529 + (TG)n Simple_repeat Simple_repeat 2 41 -10 1661 183 7 3 chrY 4272055 4272340 -47241244 - AluJb SINE Alu -26 286 1 232 176 0 20 chrY 4272340 4272351 -47241233 + (TG)n Simple_repeat Simple_repeat 41 51 0 211 323 31 21 chrY 4272530 4272626 -47240958 - MIR SINE MIR -143 119 23 2097 122 17 3 chrY 4274342 4274638 -47238946 + AluSp SINE Alu 1 300 -13 190 300 169 50 chrY 4274988 4275148 -47238436 + MIR SINE MIR 34 212 -50 1870 143 27 7 chrY 4275242 4275543 -47238041 + AluSq SINE Alu 1 307 -6 813 255 28 5 chrY 4275725 4275937 -47237647 - MER20 DNA MER1_type 0 219 3 388 237 86 0 chrY 4276381 4276474 -47237110 + MER58A DNA MER1_type 1 101 -6 2267 168 66 16 chrY 4276525 4276966 -47236618 + MSTA-int LTR MaLR 181 643 -1008 2057 226 20 29 chrY 4277241 4277697 -47235887 + MSTA-int LTR MaLR 650 1101 -550 1162 244 36 32 chrY 4277697 4278188 -47235396 + LTR10B LTR ERV1 1 547 0 2351 162 134 19 chrY 4278188 4278658 -47234926 + MSTA-int LTR MaLR 1097 1620 -31 2056 148 65 35 chrY 4278677 4279076 -47234508 + MSTA LTR MaLR 1 411 -17 22 0 0 0 chrY 4280078 4280100 -47233484 + AT_rich Low_complexity Low_complexity 1 22 0 665 214 0 0 chrY 4280187 4280304 -47233280 - FLAM_C SINE Alu -16 117 1 351 228 128 20 chrY 4280634 4280783 -47232801 - MLT1F LTR MaLR -109 433 269 457 158 13 0 chrY 4280856 4280932 -47232652 - MER20 DNA MER1_type -113 106 30 329 278 35 0 chrY 4281515 4281630 -47231954 + L1M4 LINE L1 5714 5832 -342 1053 139 6 0 chrY 4281630 4281788 -47231796 + AluY SINE Alu 1 159 -152 367 113 14 99 chrY 4281793 4281864 -47231720 + FLAM SINE Alu 66 117 -16 186 298 0 0 chrY 4282889 4282936 -47230648 - L2 LINE L2 -1 3271 3225 315 278 60 60 chrY 4283101 4283252 -47230332 - MLT1J LTR MaLR -38 473 323 180 300 57 29 chrY 4284563 4284633 -47228951 - L3 LINE CR1 -1495 82 11 2011 149 13 0 chrY 4284890 4285198 -47228386 + AluSx SINE Alu 1 312 0 42 36 0 0 chrY 4285694 4285750 -47227834 + AT_rich Low_complexity Low_complexity 1 56 0 1064 188 87 37 chrY 4287133 4287431 -47226153 - L1MB8 LINE L1 -281 5897 5585 544 250 100 0 chrY 4288108 4288268 -47225316 - MER58B DNA MER1_type -3 338 163 6756 94 18 88 chrY 4288325 4289367 -47224217 - L1PA8 LINE L1 0 6172 5141 1242 214 122 67 chrY 4289981 4290415 -47223169 - MLT1C LTR MaLR 0 467 10 1487 179 77 4 chrY 4291517 4291790 -47221794 - AluJb SINE Alu -19 293 1 2154 112 3 0 chrY 4291990 4292294 -47221290 + AluY SINE Alu 1 305 -6 463 149 0 0 chrY 4292294 4292368 -47221216 + AluS SINE Alu 232 305 -5 1491 229 7 0 chrY 4293860 4294161 -47219423 - AluJo SINE Alu -9 303 1 1436 283 14 13 chrY 4294239 4294728 -47218856 - L1ME1 LINE L1 -104 6062 5569 490 92 27 71 chrY 4295295 4295479 -47218105 + (TAGA)n Simple_repeat Simple_repeat 2 177 0 352 126 34 86 chrY 4295497 4295672 -47217912 + (TAGA)n Simple_repeat Simple_repeat 4 169 0 1756 219 12 17 chrY 4296252 4296663 -47216921 + L1MB3 LINE L1 5733 6141 -42 1119 215 16 12 chrY 4296663 4296914 -47216670 + AluJo SINE Alu 42 293 -19 762 290 6 72 chrY 4297197 4297384 -47216200 + L1MD1 LINE L1 5704 5863 -379 17585 97 23 0 chrY 4297384 4300546 -47213038 + L1PA7 LINE L1 2952 6153 -1 762 290 6 72 chrY 4300546 4300679 -47212905 + L1MD1 LINE L1 5863 6003 -239 627 251 121 20 chrY 4301127 4301326 -47212258 - MER20 DNA MER1_type 0 219 1 893 150 30 129 chrY 4301793 4302026 -47211558 + MER2 DNA MER2_type 1 210 -135 640 270 7 0 chrY 4302175 4302323 -47211261 - MER58A DNA MER1_type 0 158 10 788 199 31 6 chrY 4303079 4303240 -47210344 + MER20 DNA MER1_type 55 219 0 1519 238 58 0 chrY 4303852 4304197 -47209387 - MLT1A1 LTR MaLR 0 365 1 246 348 0 0 chrY 4304218 4304287 -47209297 - MIR3 SINE MIR -16 192 124 211 307 114 2 chrY 4304386 4304528 -47209056 - MIR SINE MIR -58 150 3 2102 157 0 0 chrY 4306975 4307281 -47206303 - AluSx SINE Alu -6 306 1 1398 197 7 21 chrY 4307828 4308107 -47205477 + AluJb SINE Alu 1 275 -37 414 0 0 0 chrY 4308116 4308162 -47205422 + (TAAA)n Simple_repeat Simple_repeat 2 47 0 23 0 0 0 chrY 4308791 4308814 -47204770 + AT_rich Low_complexity Low_complexity 1 23 0 830 203 14 0 chrY 4308815 4308963 -47204621 - AluJb SINE Alu -24 288 139 1506 218 0 0 chrY 4309254 4309534 -47204050 - AluJb SINE Alu -32 280 1 2561 109 56 6 chrY 4309717 4310076 -47203508 - MER51B LTR ERV1 0 377 1 7854 162 66 54 chrY 4310076 4311725 -47201859 - LTR10C-int LTR ERV1 0 7816 5837 312 29 0 0 chrY 4311725 4311759 -47201825 - L1PA3 LINE L1 -19 6136 6103 7854 162 66 54 chrY 4311759 4312333 -47201251 - LTR10C-int LTR ERV1 -1979 5837 5272 2396 73 3 3 chrY 4312344 4312647 -47200937 - AluY SINE Alu -8 303 1 2091 152 136 58 chrY 4312692 4313472 -47200112 - LTR10C-int LTR ERV1 -2043 5375 4657 7095 67 35 3 chrY 4313472 4314525 -47199059 - L1PA6 LINE L1 -2 6152 5078 2091 152 136 58 chrY 4314525 4314611 -47198973 - LTR10C-int LTR ERV1 -2761 4657 3504 * 3682 128 86 61 chrY 4314609 4314803 -47198781 - LTR10C-int LTR ERV1 -4501 3315 3127 2205 110 13 7 chrY 4314803 4315113 -47198471 + AluSx SINE Alu 1 312 0 3682 128 86 61 chrY 4315113 4315717 -47197867 - LTR10C-int LTR ERV1 -4689 3127 2497 2766 118 22 49 chrY 4315715 4315808 -47197776 - LTR10C-int LTR ERV1 -5491 2325 2231 * 2092 131 0 3 chrY 4315808 4316099 -47197485 + AluSq SINE Alu 1 290 -23 2766 118 22 49 chrY 4316099 4316558 -47197026 - LTR10C-int LTR ERV1 -5585 2231 1788 492 165 0 128 chrY 4316558 4316691 -47196893 - MER4A LTR ERV1 -147 517 402 7876 153 47 23 chrY 4316695 4316999 -47196585 - LTR10C-int LTR ERV1 -6354 1462 1167 5013 61 0 2 chrY 4316999 4317591 -47195993 - LTR10C LTR ERV1 0 591 1 7876 153 47 23 chrY 4317591 4318714 -47194870 - LTR10C-int LTR ERV1 -6649 1167 1 2002 135 70 11 chrY 4318714 4318796 -47194788 - MER51B LTR ERV1 0 377 301 6285 80 10 18 chrY 4318796 4319582 -47194002 + LTR17 LTR ERV1 1 780 0 2002 135 70 11 chrY 4319582 4319855 -47193729 - MER51B LTR ERV1 -76 301 1 722 279 0 0 chrY 4320058 4320212 -47193372 + FRAM SINE Alu 1 154 -12 1053 228 19 0 chrY 4320974 4321189 -47192395 - MER20 DNA MER1_type 0 219 1 1702 176 87 113 chrY 4321370 4321920 -47191664 - LTR10A LTR ERV1 -61 548 13 12814 172 31 44 chrY 4321932 4326198 -47187386 - Harlequin LTR ERV1 -4 6645 719 4398 225 38 27 chrY 4326249 4327444 -47186140 - HERVI LTR ERV1 -5812 837 499 724 250 52 49 chrY 4327491 4327779 -47185805 - HERVI LTR ERV1 -6360 289 1 1903 169 88 81 chrY 4327788 4328332 -47185252 - LTR10A LTR ERV1 -61 548 1 2084 151 8 48 chrY 4329697 4330075 -47183509 + THE1B LTR MaLR 2 364 0 326 164 9 146 chrY 4330451 4330561 -47183023 + THE1A LTR MaLR 2 96 -259 * 1193 118 0 0 chrY 4330545 4330706 -47182878 - THE1B LTR MaLR -38 326 166 1805 129 11 4 chrY 4330931 4331254 -47182330 - AluSx SINE Alu 0 325 1 1309 223 3 0 chrY 4331277 4331564 -47182020 + AluJo SINE Alu 1 288 -24 1216 204 35 14 chrY 4331776 4332060 -47181524 + AluJo SINE Alu 4 293 -19 21 0 0 0 chrY 4332493 4332514 -47181070 + AT_rich Low_complexity Low_complexity 1 21 0 2218 101 0 10 chrY 4332608 4332943 -47180641 + AluSp SINE Alu 1 313 0 448 250 65 0 chrY 4333814 4333922 -47179662 - MER58A DNA MER1_type -2 222 108 1129 186 45 5 chrY 4333931 4334151 -47179433 - MLT1B LTR MaLR -12 378 150 238 281 16 31 chrY 4334176 4334240 -47179344 - MER58A DNA MER1_type -42 65 3 1358 234 7 7 chrY 4334276 4334562 -47179022 - AluJo SINE Alu -16 286 1 1593 172 11 7 chrY 4336509 4336788 -47176796 - AluSq SINE Alu -33 280 1 1088 233 5 9 chrY 4337771 4337986 -47175598 + MER58A DNA MER1_type 11 224 0 288 53 0 0 chrY 4338028 4338066 -47175518 + (TC)n Simple_repeat Simple_repeat 1 38 0 762 226 80 21 chrY 4338756 4339044 -47174540 + MER33 DNA MER1_type 20 324 0 402 214 0 0 chrY 4339258 4339328 -47174256 + AluJ/FLAM SINE Alu 2 71 -241 433 121 0 0 chrY 4339357 4339415 -47174169 + FLAM SINE Alu 69 126 -17 192 125 0 0 chrY 4339417 4339449 -47174135 + (GGATG)n Simple_repeat Simple_repeat 3 34 0 269 245 0 0 chrY 4339457 4339506 -47174078 + AluSg/x SINE Alu 135 183 -119 263 146 208 31 chrY 4340144 4340240 -47173344 - L1MB5 LINE L1 -112 6062 5950 1956 140 0 0 chrY 4340517 4340817 -47172767 - AluSx SINE Alu -12 300 1 469 302 172 26 chrY 4341168 4341212 -47172372 + L1MD2 LINE L1 5911 5947 -412 1875 147 13 0 chrY 4341212 4341519 -47172065 + AluSq SINE Alu 1 311 -2 469 302 172 26 chrY 4341519 4341852 -47171732 + L1MD2 LINE L1 5947 6343 -16 1347 201 10 30 chrY 4342476 4342779 -47170805 + AluJo SINE Alu 1 297 -15 543 285 7 0 chrY 4342780 4342924 -47170660 - MER82 DNA MER2_type -484 169 25 1754 128 10 20 chrY 4344648 4344945 -47168639 - AluSc SINE Alu 0 309 16 1011 154 44 118 chrY 4344945 4345217 -47168367 + AluJo SINE Alu 44 295 -17 1108 185 142 50 chrY 4345787 4346047 -47167537 + AluJo SINE Alu 1 284 -18 1852 181 127 0 chrY 4346118 4346489 -47167095 - MSTA LTR MaLR 0 428 11 609 261 94 47 chrY 4346509 4346911 -47166673 + L1M4c LINE L1 1116 1536 -4848 244 245 14 150 chrY 4348655 4348802 -47164782 + MER94 DNA DNA 6 132 -2 1927 92 0 51 chrY 4348877 4349189 -47164395 - AluSc SINE Alu 0 298 2 614 200 87 0 chrY 4349634 4349749 -47163835 + FLAM_C SINE Alu 1 125 -8 501 32 0 0 chrY 4349750 4349813 -47163771 + (CA)n Simple_repeat Simple_repeat 2 64 0 1259 176 69 35 chrY 4349817 4350107 -47163477 + AluJo SINE Alu 2 301 -1 1838 140 10 3 chrY 4351176 4351469 -47162115 + AluSq SINE Alu 3 297 -16 367 73 73 30 chrY 4351502 4351666 -47161918 + (TA)n Simple_repeat Simple_repeat 2 172 0 248 121 77 0 chrY 4351695 4351786 -47161798 + (TA)n Simple_repeat Simple_repeat 1 98 0 319 172 0 0 chrY 4351789 4351852 -47161732 - AluJb SINE Alu -185 117 71 712 179 8 8 chrY 4353587 4353710 -47159874 - FLAM_C SINE Alu -19 124 2 428 222 68 8 chrY 4353949 4354066 -47159518 - LTR16B LTR ERVL -26 438 315 1668 158 4 0 chrY 4354097 4354363 -47159221 + AluSx SINE Alu 1 267 -45 672 228 19 13 chrY 4355025 4355101 -47158483 + MER20 DNA MER1_type 3 77 -142 1681 211 18 0 chrY 4355101 4355442 -47158142 - MER7A DNA MER2_type -1 345 1 672 228 19 13 chrY 4355442 4355523 -47158061 + MER20 DNA MER1_type 77 161 -58 395 237 0 0 chrY 4355923 4355999 -47157585 - MER58A DNA MER1_type -30 77 2 1919 128 7 3 chrY 4356274 4356572 -47157012 - AluSq SINE Alu -14 299 1 206 174 22 0 chrY 4357205 4357251 -47156333 + CT-rich Low_complexity Low_complexity 3 49 0 1518 118 10 90 chrY 4360435 4360723 -47152861 - MER4A LTR ERV1 0 664 400 790 227 43 34 chrY 4361086 4361293 -47152291 + AluJo SINE Alu 87 295 -17 598 262 141 48 chrY 4361910 4362387 -47151197 - LTR67 LTR ERVL -8 549 29 6431 139 65 44 chrY 4362810 4364083 -47149501 + HSMAR2 DNA Mariner 1 1300 -2 1653 194 0 0 chrY 4364213 4364507 -47149077 + AluSx SINE Alu 1 294 -18 1107 183 57 57 chrY 4364667 4364930 -47148654 + Tigger3(Golem) DNA MER2_type 2761 3023 -6 749 278 134 30 chrY 4366676 4367173 -47146411 + L2 LINE L2 2752 3296 -17 1159 249 14 7 chrY 4367483 4367760 -47145824 + AluJo SINE Alu 12 290 -22 2276 79 0 3 chrY 4368152 4368455 -47145129 + AluY SINE Alu 1 302 -9 401 171 14 130 chrY 4368646 4368792 -47144792 - L1ME4a LINE L1 -2 6119 5991 1363 192 30 3 chrY 4368958 4369255 -47144329 - AluSx SINE Alu -5 307 3 1535 204 0 19 chrY 4369288 4369597 -47143987 + AluJo SINE Alu 1 303 -9 3326 199 45 10 chrY 4369697 4370384 -47143200 + MER50 LTR ERV1 1 711 -23 1676 187 171 31 chrY 4371687 4372168 -47141416 - LTR10A LTR ERV1 -61 548 1 7494 196 16 21 chrY 4372263 4374670 -47138914 + LTR10A-int LTR ERV1 2552 6647 -2 1951 191 104 48 chrY 4374671 4375190 -47138394 + LTR10A LTR ERV1 1 548 -61 1143 204 18 26 chrY 4375208 4375434 -47138150 - MER58A DNA MER1_type 0 224 1 276 250 10 48 chrY 4376011 4376115 -47137469 - MER58 DNA MER1_type -137 204 105 1182 205 193 4 chrY 4376128 4376382 -47137202 + AluJb SINE Alu 1 302 0 196 27 54 27 chrY 4376387 4376424 -47137160 + (CAAAAA)n Simple_repeat Simple_repeat 4 41 0 230 268 127 0 chrY 4376426 4376497 -47137087 - MER58 DNA MER1_type -2330 90 11 2269 75 7 13 chrY 4377563 4377871 -47135713 + AluY SINE Alu 3 308 -3 1207 122 11 0 chrY 4377880 4378068 -47135516 + AluSg/x SINE Alu 121 310 0 372 22 0 0 chrY 4380137 4380182 -47133402 + (TG)n Simple_repeat Simple_repeat 2 46 0 5789 163 24 36 chrY 4380182 4380946 -47132638 - MER11C LTR ERVK -1 1070 321 2231 91 37 0 chrY 4380946 4381242 -47132342 - AluY SINE Alu -4 307 1 5789 163 24 36 chrY 4381242 4381560 -47132024 - MER11C LTR ERVK -750 321 1 189 0 0 0 chrY 4381648 4381669 -47131915 + (TG)n Simple_repeat Simple_repeat 1 21 0 695 283 99 72 chrY 4382478 4382621 -47130963 + L2 LINE L2 2507 2645 -668 1484 254 25 8 chrY 4382621 4382980 -47130604 - MLT1A1 LTR MaLR 0 365 1 695 283 99 72 chrY 4382980 4383456 -47130128 + L2 LINE L2 2645 3139 -174 921 182 6 12 chrY 4383815 4383980 -47129604 + AluSg/x SINE Alu 135 298 -12 1794 161 22 0 chrY 4384803 4385070 -47128514 + AluSx SINE Alu 1 273 -39 207 0 0 0 chrY 4385655 4385678 -47127906 + (A)n Simple_repeat Simple_repeat 1 23 0 259 252 163 0 chrY 4386317 4386440 -47127144 - L1ME LINE L1 -394 5768 5626 1868 148 0 33 chrY 4388777 4389080 -47124504 - AluSx SINE Alu -19 293 1 2066 151 3 0 chrY 4389088 4389399 -47124185 - AluSx SINE Alu 0 312 1 183 262 0 0 chrY 4390186 4390228 -47123356 + MIR SINE MIR 109 150 -112 553 201 63 90 chrY 4391025 4391214 -47122370 + MSTD LTR MaLR 210 393 -3 1633 151 55 24 chrY 4391553 4391844 -47121740 + AluSx SINE Alu 1 300 -12 284 251 143 54 chrY 4391938 4392364 -47121220 + L1M4 LINE L1 2598 3061 -3085 22 70 0 0 chrY 4392726 4392769 -47120815 + AT_rich Low_complexity Low_complexity 1 43 0 2078 122 3 3 chrY 4393244 4393538 -47120046 - AluSc SINE Alu -15 294 1 549 263 31 85 chrY 4393662 4393773 -47119811 - L1M4 LINE L1 -2117 4029 3913 1782 146 18 0 chrY 4393773 4394054 -47119530 - AluJb SINE Alu -19 293 8 549 263 31 85 chrY 4394054 4394235 -47119349 - L1M4 LINE L1 -2233 3913 3753 242 297 121 11 chrY 4394253 4394435 -47119149 - L1M4 LINE L1 -2468 3678 3477 * 29949 76 10 2 chrY 4394405 4399184 -47114400 - L1PA5 LINE L1 0 6154 1338 31853 59 2 3 chrY 4399187 4403162 -47110422 + L1PA3 LINE L1 1 3968 -2178 8116 37 5 0 chrY 4403162 4404885 -47108699 + L1PA3 LINE L1 4454 6180 0 1079 216 100 23 chrY 4404889 4405148 -47108436 - AluJb SINE Alu -33 279 1 1276 176 9 0 chrY 4405243 4405453 -47108131 - L1PA16 LINE L1 -9 6157 5946 207 100 0 0 chrY 4405633 4405663 -47107921 + (GA)n Simple_repeat Simple_repeat 1 30 0 1689 152 59 7 chrY 4405729 4406019 -47107565 - AluSc SINE Alu -4 305 1 2141 130 0 7 chrY 4406548 4406849 -47106735 - AluSg SINE Alu 0 310 12 198 0 0 0 chrY 4407774 4407796 -47105788 + (CAAA)n Simple_repeat Simple_repeat 2 23 0 321 136 34 136 chrY 4407810 4407846 -47105738 + MADE1 DNA Mariner 2 40 -40 222 37 0 0 chrY 4407846 4407873 -47105711 + (TG)n Simple_repeat Simple_repeat 2 28 0 1857 143 56 0 chrY 4407874 4408140 -47105444 - AluSx SINE Alu -31 281 1 321 136 34 136 chrY 4408140 4408189 -47105395 + MADE1 DNA Mariner 39 80 0 3793 147 16 13 chrY 4408560 4409093 -47104491 + L1PA16 LINE L1 5530 6067 -99 1835 203 42 125 chrY 4409093 4409758 -47103826 + LTR9 LTR ERV1 3 612 0 3793 147 16 13 chrY 4409758 4409845 -47103739 + L1PA16 LINE L1 6067 6152 -14 1544 151 33 7 chrY 4409872 4410144 -47103440 + L1MB3 LINE L1 5895 6173 -10 768 197 0 0 chrY 4410147 4410274 -47103310 - FLAM_C SINE Alu -4 129 3 431 212 7 0 chrY 4411074 4411220 -47102364 + (TA)n Simple_repeat Simple_repeat 2 148 0 219 36 0 0 chrY 4411222 4411250 -47102334 + (GA)n Simple_repeat Simple_repeat 1 28 0 1175 162 20 10 chrY 4411250 4411454 -47102130 - AluJo SINE Alu -34 278 73 465 253 0 10 chrY 4411454 4411553 -47102031 - AluJo SINE Alu -128 184 87 1139 174 32 23 chrY 4411553 4411772 -47101812 - AluJo SINE Alu -91 221 1 2073 145 0 0 chrY 4411872 4412175 -47101409 - AluSx SINE Alu -7 305 3 1296 171 23 35 chrY 4412196 4412416 -47101168 + L1MA8 LINE L1 6018 6236 -55 2137 122 14 0 chrY 4412416 4412711 -47100873 + AluSp SINE Alu 1 299 -14 1296 171 23 35 chrY 4412711 4412747 -47100837 + L1MA8 LINE L1 6236 6271 -20 2026 138 3 0 chrY 4412763 4413046 -47100538 + AluSx SINE Alu 1 284 -28 1681 134 30 0 chrY 4413101 4413370 -47100214 - L1MA5A LINE L1 0 6297 6021 1540 161 71 29 chrY 4413740 4413991 -47099593 + MLT1A1 LTR MaLR 43 311 -54 1682 89 12 32 chrY 4413991 4414239 -47099345 + MER75B DNA T2_type 1 243 0 1540 161 71 29 chrY 4414239 4414297 -47099287 + MLT1A1 LTR MaLR 311 365 0 1770 158 3 36 chrY 4414414 4414717 -47098867 - AluSq SINE Alu -18 295 3 887 223 0 33 chrY 4414973 4415184 -47098400 + MER20 DNA MER1_type 1 204 -15 1591 159 3 76 chrY 4415429 4415602 -47097982 - AluJo SINE Alu -19 293 152 1884 172 0 3 chrY 4415602 4415893 -47097691 - AluSx SINE Alu -22 290 1 1591 159 3 76 chrY 4415893 4416034 -47097550 - AluJo SINE Alu -160 152 2 960 239 95 31 chrY 4416077 4416404 -47097180 - MLT1C LTR MaLR -8 459 112 1676 230 61 2 chrY 4416724 4417119 -47096465 + L1MB5 LINE L1 5728 6149 -25 1966 139 7 7 chrY 4417119 4417435 -47096149 + AluSx SINE Alu 3 312 0 1676 230 61 2 chrY 4417435 4417447 -47096137 + L1MB5 LINE L1 6149 6159 -15 1509 208 0 14 chrY 4417540 4417834 -47095750 + AluJo SINE Alu 1 290 -22 2104 131 7 0 chrY 4417938 4418228 -47095356 - AluSx SINE Alu -16 296 5 2070 120 7 10 chrY 4418257 4418556 -47095028 - AluY SINE Alu -13 298 1 268 77 39 0 chrY 4418652 4418704 -47094880 + (TTA)n Simple_repeat Simple_repeat 1 54 0 41593 37 25 1 chrY 4418704 4424722 -47088862 - L1PA2 LINE L1 -13 6142 1 22 0 0 0 chrY 4424854 4424876 -47088708 + AT_rich Low_complexity Low_complexity 1 22 0 1363 236 7 7 chrY 4425145 4425421 -47088163 - AluJo SINE Alu -32 280 5 748 207 64 11 chrY 4425575 4425762 -47087822 + MLT1B LTR MaLR 1 187 -187 966 183 52 0 chrY 4425764 4425955 -47087629 - L1MB1 LINE L1 -1 6167 5967 477 122 0 0 chrY 4425963 4426037 -47087547 + (TC)n Simple_repeat Simple_repeat 1 74 0 776 207 0 0 chrY 4426060 4426200 -47087384 + MLT1B LTR MaLR 193 332 -58 1773 162 184 11 chrY 4426295 4426470 -47087114 - MSTA LTR MaLR -7 421 278 180 0 0 0 chrY 4426470 4426490 -47087094 + (GA)n Simple_repeat Simple_repeat 1 20 0 1773 162 184 11 chrY 4426490 4426673 -47086911 - MSTA LTR MaLR -150 278 1 2379 215 45 8 chrY 4426994 4427497 -47086087 + L1MB1 LINE L1 5586 6111 -78 2207 112 48 0 chrY 4427497 4427828 -47085756 + L1PB1 LINE L1 5800 6146 -5 2379 215 45 8 chrY 4427828 4427854 -47085730 + L1MB1 LINE L1 6111 6135 -54 261 227 61 0 chrY 4427854 4427920 -47085664 + L1MB1 LINE L1 6092 6161 -28 22 0 0 0 chrY 4428241 4428263 -47085321 + AT_rich Low_complexity Low_complexity 1 22 0 198 0 0 0 chrY 4428881 4428903 -47084681 + (T)n Simple_repeat Simple_repeat 1 22 0 560 205 8 33 chrY 4428991 4429391 -47084193 + CT-rich Low_complexity Low_complexity 1 390 0 1778 149 7 35 chrY 4429660 4429949 -47083635 + AluSx SINE Alu 1 281 -31 580 226 0 38 chrY 4429990 4430123 -47083461 + FLAM_C SINE Alu 1 128 -5 269 93 167 19 chrY 4430131 4430185 -47083399 + L1M3 LINE L1 5652 5713 -470 1474 193 10 49 chrY 4430198 4430504 -47083080 + AluJb SINE Alu 13 306 -6 849 237 56 40 chrY 4430511 4430845 -47082739 + L1MB5 LINE L1 5701 6037 -147 1394 108 0 0 chrY 4430853 4431039 -47082545 + AluSg/x SINE Alu 114 299 -13 341 202 71 12 chrY 4431101 4431185 -47082399 + L1MB3 LINE L1 6092 6180 -3 2320 141 68 34 chrY 4431705 4432144 -47081440 - MER50 LTR ERV1 -280 454 1 2224 121 3 0 chrY 4432148 4432461 -47081123 + MER41A LTR ERV1 1 314 -240 209 161 0 0 chrY 4433110 4433141 -47080443 + polypyrimidine Low_complexity Low_complexity 4 34 0 655 214 0 0 chrY 4433799 4433925 -47079659 + L1MB3 LINE L1 5804 5929 -254 670 152 14 58 chrY 4433928 4434066 -47079518 - LTR23 LTR ERV1 -1 436 305 1208 232 19 3 chrY 4434066 4434337 -47079247 - LTR10B LTR ERV1 0 591 310 248 269 0 0 chrY 4434356 4434408 -47079176 + LTR30 LTR ERV1 1 52 -670 1003 155 61 18 chrY 4434408 4434632 -47078952 + LTR12 LTR ERV1 60 1982 -456 284 145 87 14 chrY 4434670 4434739 -47078845 + LTR12 LTR ERV1 204 277 -437 291 165 63 90 chrY 4434739 4434850 -47078734 + LTR30 LTR ERV1 375 477 -92 589 141 0 0 chrY 4434855 4434940 -47078644 + LTR12 LTR ERV1 630 714 0 30341 133 13 11 chrY 4434960 4440381 -47073203 + HERV9 LTR ERV1 55 5568 -2831 6207 128 3 2 chrY 4440379 4441854 -47071730 + HERV9 LTR ERV1 6887 8399 0 * 252 208 0 19 chrY 4441854 4441907 -47071677 + LTR30 LTR ERV1 1 52 -670 677 178 22 144 chrY 4441907 4442177 -47071407 + LTR12 LTR ERV1 53 289 -425 259 222 0 42 chrY 4442177 4442249 -47071335 + LTR30 LTR ERV1 556 624 -98 662 144 14 1 chrY 4442249 4442366 -47071218 + LTR12 LTR ERV1 52 714 0 505 188 97 51 chrY 4442366 4442569 -47071015 - LTR10B LTR ERV1 -287 218 1 5256 254 43 28 chrY 4442570 4444453 -47069131 - LTR10B-int LTR ERV1 -2 6647 4795 7586 72 23 12 chrY 4444453 4445412 -47068172 + LTR5 LTR ERVK 1 969 0 5256 254 43 28 chrY 4445412 4445609 -47067975 - LTR10B-int LTR ERV1 -1854 4795 2603 1721 304 58 22 chrY 4445634 4446311 -47067273 - LTR10B-int LTR ERV1 -2545 5240 4540 623 173 0 127 chrY 4446310 4446460 -47067124 - LTR10B-int LTR ERV1 -3220 3429 3299 * 5187 256 23 23 chrY 4446459 4447845 -47065739 - LTR10B-int LTR ERV1 -3768 2761 1374 449 226 148 13 chrY 4447835 4447990 -47065594 - LTR10B-int LTR ERV1 -5869 780 605 * 979 257 92 4 chrY 4447986 4448258 -47065326 - LTR10B-int LTR ERV1 -6347 302 7 1690 208 139 29 chrY 4448260 4448741 -47064843 - LTR10B LTR ERV1 0 547 14 843 212 0 0 chrY 4448747 4448893 -47064691 - AluJb SINE Alu -59 253 108 1284 185 43 18 chrY 4448903 4449184 -47064400 - LTR56 LTR ERV1 -149 296 9 250 277 24 0 chrY 4449190 4449273 -47064311 + L1MB2 LINE L1 5928 6012 -159 1416 217 23 7 chrY 4449323 4449623 -47063961 + AluJb SINE Alu 1 305 -7 604 237 8 0 chrY 4449786 4449977 -47063607 + FLAM_C SINE Alu 2 193 0 2272 148 22 3 chrY 4450044 4450401 -47063183 + THE1B LTR MaLR 1 364 0 3680 154 22 14 chrY 4450495 4450936 -47062648 + MER41B LTR ERV1 1 450 -185 1766 186 30 19 chrY 4450936 4451307 -47062277 - THE1C LTR MaLR 0 375 1 3680 154 22 14 chrY 4451307 4451495 -47062089 + MER41B LTR ERV1 450 635 0 1410 169 31 0 chrY 4452013 4452273 -47061311 + LTR26 LTR ERV1 1 268 -335 528 286 29 29 chrY 4452326 4452443 -47061141 + L1MD2 LINE L1 6077 6193 -166 1569 173 67 50 chrY 4452443 4452801 -47060783 + THE1B LTR MaLR 1 364 0 528 286 29 29 chrY 4452801 4452956 -47060628 + L1MD2 LINE L1 6192 6349 -10 2372 243 35 34 chrY 4453215 4453866 -47059718 + MER82 DNA MER2_type 1 652 -1 234 324 39 0 chrY 4453880 4453982 -47059602 + MLT1G1 LTR MaLR 25 130 -463 239 343 118 22 chrY 4454096 4454274 -47059310 + MLT1G1 LTR MaLR 305 499 -96 276 130 0 0 chrY 4454561 4454607 -47058977 + (T)n Simple_repeat Simple_repeat 1 46 0 40318 78 10 1 chrY 4454607 4460707 -47052877 - L1PA5 LINE L1 0 6154 1 26227 277 24 32 chrY 4461550 4469009 -47044575 + HERV3 LTR ERV1 1031 8426 0 668 221 140 56 chrY 4469126 4469448 -47044136 + LTR15 LTR ERV1 127 475 -18 515 191 171 0 chrY 4469673 4469778 -47043806 + FLAM_C SINE Alu 3 125 -18 1280 239 10 16 chrY 4469790 4470104 -47043480 + AluJo SINE Alu 1 312 0 1960 149 0 4 chrY 4470205 4470481 -47043103 + AluSc SINE Alu 5 279 -30 324 48 0 0 chrY 4470481 4470523 -47043061 + (CTAA)n Simple_repeat Simple_repeat 3 44 0 1496 187 11 22 chrY 4470970 4471248 -47042336 + AluJo SINE Alu 1 275 -37 271 328 8 23 chrY 4471280 4471408 -47042176 - L2 LINE L2 0 3313 3188 1627 191 0 3 chrY 4471420 4471702 -47041882 + AluJb SINE Alu 6 286 -26 198 0 0 0 chrY 4471705 4471727 -47041857 + (TTAA)n Simple_repeat Simple_repeat 3 24 0 245 238 148 50 chrY 4471807 4471908 -47041676 - L2 LINE L2 -252 3061 2951 218 292 34 39 chrY 4472352 4472530 -47041054 + (TATATG)n Simple_repeat Simple_repeat 3 179 0 * 363 237 52 12 chrY 4472405 4472578 -47041006 + (TA)n Simple_repeat Simple_repeat 1 180 0 360 278 34 17 chrY 4472534 4472710 -47040874 + (CATA)n Simple_repeat Simple_repeat 2 180 0 * 202 242 33 33 chrY 4472685 4472743 -47040841 + (CATATA)n Simple_repeat Simple_repeat 6 66 -30 * 1483 167 82 43 chrY 4472743 4472879 -47040705 + AluSx SINE Alu 1 130 -182 2966 0 0 0 chrY 4472879 4473189 -47040395 + AluYa5 SINE Alu 1 310 -1 1483 167 82 43 chrY 4473189 4473333 -47040251 + AluSx SINE Alu 130 292 -20 202 242 33 33 chrY 4473333 4473365 -47040219 + (CATATA)n Simple_repeat Simple_repeat 65 96 0 564 125 40 17 chrY 4473372 4473548 -47040036 + (TAGA)n Simple_repeat Simple_repeat 1 180 0 439 278 5 48 chrY 4473665 4473852 -47039732 + (CA)n Simple_repeat Simple_repeat 2 180 0 208 355 13 20 chrY 4473906 4474058 -47039526 + (CA)n Simple_repeat Simple_repeat 1 151 0 335 89 0 0 chrY 4474068 4474113 -47039471 + AluSq SINE Alu 141 185 -118 305 283 30 18 chrY 4474116 4474282 -47039302 + (CATA)n Simple_repeat Simple_repeat 1 168 0 370 284 19 26 chrY 4474323 4474478 -47039106 + (CATA)n Simple_repeat Simple_repeat 4 157 0 1910 140 0 14 chrY 4474819 4475104 -47038480 + AluSg SINE Alu 1 308 0 244 0 0 0 chrY 4475104 4475131 -47038453 + (TAAA)n Simple_repeat Simple_repeat 2 36 0 730 106 10 0 chrY 4475276 4475380 -47038204 + AluSq SINE Alu 134 238 -75 1868 169 0 3 chrY 4475671 4475972 -47037612 + AluSx SINE Alu 1 300 -12 821 172 84 47 chrY 4475972 4476019 -47037565 - L1MA8 LINE L1 -23 6268 6224 1932 135 56 0 chrY 4476019 4476307 -47037277 + AluSc SINE Alu 1 304 -5 821 172 84 47 chrY 4476307 4476463 -47037121 - L1MA8 LINE L1 -67 6224 6054 1935 163 3 16 chrY 4476651 4476957 -47036627 + AluSx SINE Alu 1 302 -10 1003 154 43 98 chrY 4477077 4477158 -47036426 + AluJo SINE Alu 46 130 -182 235 0 57 0 chrY 4477158 4477193 -47036391 + (TTTA)n Simple_repeat Simple_repeat 3 39 0 2050 143 0 0 chrY 4477200 4477486 -47036098 - AluSg SINE Alu -24 286 1 1003 154 43 98 chrY 4477486 4477630 -47035954 + AluJo SINE Alu 136 266 -46 2245 97 17 0 chrY 4477911 4478201 -47035383 - AluY SINE Alu -16 295 1 1736 201 14 47 chrY 4478241 4478652 -47034932 + L1MC2 LINE L1 5937 6335 -9 1618 158 8 71 chrY 4478652 4479006 -47034578 + L1PB2 LINE L1 5817 6148 -3 2008 147 0 7 chrY 4479166 4479458 -47034126 + AluSx SINE Alu 1 290 -22 189 107 0 0 chrY 4479489 4479517 -47034067 + (TAA)n Simple_repeat Simple_repeat 2 29 0 1223 193 84 7 chrY 4479517 4479792 -47033792 + AluJo SINE Alu 1 296 -6 1418 129 4 43 chrY 4480130 4480362 -47033222 - AluSg/x SINE Alu -6 304 82 186 43 0 0 chrY 4480362 4480385 -47033199 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 1793 170 0 7 chrY 4480425 4480731 -47032853 + AluSg SINE Alu 7 310 0 219 36 0 0 chrY 4480781 4480809 -47032775 + (CA)n Simple_repeat Simple_repeat 1 28 0 1881 156 7 17 chrY 4480815 4481104 -47032480 - AluSx SINE Alu -26 286 1 683 205 8 8 chrY 4481129 4481256 -47032328 + FLAM_C SINE Alu 1 127 -16 219 114 45 0 chrY 4481256 4481300 -47032284 + (TAA)n Simple_repeat Simple_repeat 3 48 0 566 207 51 109 chrY 4481957 4482137 -47031447 + L1MB3 LINE L1 5145 5334 -812 1694 193 3 0 chrY 4482137 4482432 -47031152 + AluSx SINE Alu 1 296 -16 1904 159 10 7 chrY 4482440 4482749 -47030835 + AluSx SINE Alu 1 310 -2 566 207 51 109 chrY 4482749 4482834 -47030750 + L1MB3 LINE L1 5341 5403 -743 * 1849 245 45 35 chrY 4482816 4483354 -47030230 + L1MA3 LINE L1 5477 6019 -286 * 3671 159 30 0 chrY 4482870 4483478 -47030106 + L1PA16 LINE L1 5521 6146 -20 748 194 62 0 chrY 4483487 4483647 -47029937 + L1MB3 LINE L1 5428 5597 -577 338 206 16 0 chrY 4483647 4483710 -47029874 + Charlie1 DNA MER1_type 2697 2760 -1 776 244 6 6 chrY 4484095 4484275 -47029309 + MER58A DNA MER1_type 45 224 0 2320 96 0 13 chrY 4484358 4484670 -47028914 + AluY SINE Alu 1 308 -3 25 0 0 0 chrY 4484670 4484695 -47028889 + AT_rich Low_complexity Low_complexity 1 25 0 2098 198 24 26 chrY 4484829 4485298 -47028286 + MER89 LTR ERV1 1 468 -91 405 214 39 0 chrY 4485307 4485461 -47028123 + (TGGA)n Simple_repeat Simple_repeat 3 162 0 337 261 35 0 chrY 4485476 4485591 -47027993 + (TAGA)n Simple_repeat Simple_repeat 4 122 0 645 199 27 0 chrY 4485591 4485894 -47027690 + (TGGA)n Simple_repeat Simple_repeat 1 311 0 499 196 22 17 chrY 4485914 4486093 -47027491 + (TGGA)n Simple_repeat Simple_repeat 1 180 0 374 230 11 0 chrY 4486105 4486192 -47027392 + MER89 LTR ERV1 472 559 0 1907 142 17 0 chrY 4487066 4487355 -47026229 + AluY SINE Alu 1 294 -17 1624 189 7 23 chrY 4487622 4487924 -47025660 - AluJo SINE Alu -15 297 1 635 128 23 8 chrY 4488713 4488846 -47024738 + (TCCA)n Simple_repeat Simple_repeat 3 137 0 237 33 0 0 chrY 4488866 4488896 -47024688 + (TTAA)n Simple_repeat Simple_repeat 3 32 0 2099 130 0 0 chrY 4488899 4489184 -47024400 - AluSx SINE Alu -27 285 1 207 206 59 7 chrY 4489267 4489403 -47024181 + (TCCA)n Simple_repeat Simple_repeat 3 145 0 1942 124 57 0 chrY 4489542 4489824 -47023760 + AluSc SINE Alu 1 298 -11 3014 199 17 5 chrY 4489868 4490472 -47023112 + L1MB3 LINE L1 5566 6176 -7 2078 134 0 7 chrY 4490784 4491091 -47022493 - AluSg1 SINE Alu 0 309 5 2131 131 3 3 chrY 4491163 4491461 -47022123 + AluSx SINE Alu 1 298 -14 1920 149 36 0 chrY 4491468 4491769 -47021815 + AluSx SINE Alu 1 312 0 1037 155 184 15 chrY 4491777 4491983 -47021601 + AluSg1 SINE Alu 1 241 -68 1775 195 102 36 chrY 4492604 4492731 -47020853 - MLT1D LTR MaLR -2 503 386 1819 166 0 3 chrY 4492731 4493014 -47020570 + AluJo SINE Alu 1 282 -30 1775 195 102 36 chrY 4493014 4493358 -47020226 - MLT1D LTR MaLR -119 386 1 508 158 11 0 chrY 4493506 4493601 -47019983 - L1PA11 LINE L1 0 6174 6079 426 178 0 0 chrY 4493601 4493674 -47019910 - L1P4 LINE L1 -680 5488 5416 * 4592 123 13 1 chrY 4493650 4494326 -47019258 - L1PA11 LINE L1 -81 6093 5410 1119 172 0 26 chrY 4494618 4494810 -47018774 + AluJo SINE Alu 90 276 -36 1006 139 75 111 chrY 4494844 4495124 -47018460 + L1MA8 LINE L1 6020 6289 -2 1914 142 14 3 chrY 4495131 4495426 -47018158 + AluSx SINE Alu 1 298 -14 213 288 0 0 chrY 4495445 4495518 -47018066 + A-rich Low_complexity Low_complexity 1 73 0 624 198 0 0 chrY 4495557 4495663 -47017921 + FLAM_A SINE Alu 25 130 -12 1838 179 3 0 chrY 4495694 4495995 -47017589 - AluSq SINE Alu -11 302 1 275 205 84 12 chrY 4496087 4496170 -47017414 - MLT1D LTR MaLR -30 475 387 * 1939 163 119 26 chrY 4496165 4496522 -47017062 - MSTA LTR MaLR -6 422 25 2566 102 28 3 chrY 4496522 4496886 -47016698 + THE1C LTR MaLR 3 375 0 1939 163 119 26 chrY 4496886 4496914 -47016670 - MSTA LTR MaLR -403 25 1 1828 220 32 3 chrY 4496914 4497291 -47016293 - MLT1D LTR MaLR -113 392 5 2281 125 0 3 chrY 4497504 4497816 -47015768 - AluY SINE Alu 0 311 1 1693 168 33 4 chrY 4497948 4498222 -47015362 - AluJb SINE Alu -30 282 1 3693 159 2 3 chrY 4498304 4498896 -47014688 + L1PA15 LINE L1 5467 6057 -108 698 236 14 7 chrY 4498901 4499049 -47014535 - AluJo SINE Alu -162 150 2 2146 132 0 7 chrY 4499054 4499349 -47014235 - AluSx SINE Alu -19 293 1 372 318 121 21 chrY 4499438 4499586 -47013998 - HAL1 LINE L1 -145 2362 2230 306 0 0 0 chrY 4499586 4499620 -47013964 + (CA)n Simple_repeat Simple_repeat 2 35 0 372 318 121 21 chrY 4499620 4499983 -47013601 - HAL1 LINE L1 -277 2230 1800 208 170 0 75 chrY 4500030 4500083 -47013501 + MIR SINE MIR 108 156 -106 1889 166 16 3 chrY 4500515 4500823 -47012761 - AluSx SINE Alu 0 312 1 488 192 6 33 chrY 4500833 4501015 -47012569 + CT-rich Low_complexity Low_complexity 2 178 0 209 213 0 32 chrY 4501032 4501126 -47012458 + CT-rich Low_complexity Low_complexity 2 92 0 1670 167 0 44 chrY 4501296 4501431 -47012153 + AluJb SINE Alu 1 140 -172 2100 148 0 0 chrY 4501431 4501729 -47011855 + AluSg SINE Alu 1 298 -12 1670 167 0 44 chrY 4501729 4501910 -47011674 + AluJb SINE Alu 140 303 -9 285 151 0 0 chrY 4502257 4502310 -47011274 + (TG)n Simple_repeat Simple_repeat 1 53 0 1748 179 15 3 chrY 4502469 4502793 -47010791 + MLT1A1 LTR MaLR 1 328 -37 1839 147 27 14 chrY 4502923 4503215 -47010369 + AluSq SINE Alu 1 296 -17 263 260 0 26 chrY 4503412 4503489 -47010095 + L1M3 LINE L1 5633 5707 -473 270 0 0 0 chrY 4503530 4503560 -47010024 + (TC)n Simple_repeat Simple_repeat 2 31 0 * 369 0 0 0 chrY 4503559 4503600 -47009984 + (TA)n Simple_repeat Simple_repeat 2 42 0 236 69 0 0 chrY 4503600 4503629 -47009955 - Alu SINE Alu -17 283 255 2175 122 0 3 chrY 4503632 4503928 -47009656 - AluY SINE Alu -16 295 1 1628 192 3 14 chrY 4503937 4504229 -47009355 - AluJb SINE Alu -23 289 1 1510 126 8 8 chrY 4504255 4504493 -47009091 - L1PA14 LINE L1 -2 6159 5922 2069 149 0 0 chrY 4504575 4504876 -47008708 + AluSg SINE Alu 1 301 -9 292 156 13 13 chrY 4505129 4505206 -47008378 + (TA)n Simple_repeat Simple_repeat 1 77 0 710 171 18 9 chrY 4505412 4505634 -47007950 + CT-rich Low_complexity Low_complexity 1 224 0 1135 212 9 0 chrY 4505653 4505870 -47007714 - AluJb SINE Alu -93 219 1 1380 206 87 4 chrY 4505971 4506247 -47007337 + AluJo SINE Alu 1 299 -13 931 213 6 0 chrY 4506869 4507052 -47006532 - AluJo SINE Alu -8 304 121 22 0 0 0 chrY 4507065 4507087 -47006497 + AT_rich Low_complexity Low_complexity 1 22 0 1613 176 17 10 chrY 4507130 4507420 -47006164 - AluSx SINE Alu -20 292 1 4228 153 52 88 chrY 4507428 4507912 -47005672 - L1MC1 LINE L1 0 6333 5898 1567 215 10 0 chrY 4507912 4508205 -47005379 - AluJo SINE Alu -8 304 9 4228 153 52 88 chrY 4508205 4508674 -47004910 - L1MC1 LINE L1 -435 5898 5414 292 272 86 49 chrY 4508677 4508884 -47004700 - L1ME3A LINE L1 -224 5946 5748 1961 180 30 22 chrY 4508884 4509245 -47004339 + THE1B LTR MaLR 1 364 0 292 272 86 49 chrY 4509245 4509448 -47004136 - L1ME3A LINE L1 -422 5748 5530 33 43 0 0 chrY 4509608 4509655 -47003929 + AT_rich Low_complexity Low_complexity 1 47 0 1284 174 8 43 chrY 4509656 4509891 -47003693 - AluJo SINE Alu -49 263 37 295 270 62 89 chrY 4509913 4510094 -47003490 - L1ME3A LINE L1 -2066 4080 3907 2156 106 7 0 chrY 4510094 4510377 -47003207 + AluSc SINE Alu 1 285 -24 295 270 62 89 chrY 4510377 4510454 -47003130 - L1ME3A LINE L1 -2239 3907 3829 237 285 78 68 chrY 4510483 4510707 -47002877 - L1ME3A LINE L1 -2430 3716 3496 2552 103 5 14 chrY 4510707 4511053 -47002531 - L1PA8 LINE L1 -1 6171 5827 4914 99 133 1 chrY 4511053 4511783 -47001801 - LTR12 LTR ERV1 0 826 1 2552 103 5 14 chrY 4511783 4511806 -47001778 - L1PA8 LINE L1 -345 5827 5805 237 285 78 68 chrY 4511806 4511935 -47001649 - L1ME3A LINE L1 -2650 3496 3370 2042 141 7 10 chrY 4511935 4512241 -47001343 - AluSx SINE Alu -7 305 1 237 285 78 68 chrY 4512241 4512388 -47001196 - L1ME3A LINE L1 -2776 3370 3210 278 186 31 68 chrY 4512429 4512509 -47001075 + A-rich Low_complexity Low_complexity 1 82 -388 1610 161 79 0 chrY 4512509 4512789 -47000795 + AluSx SINE Alu 1 302 -10 278 186 31 68 chrY 4512789 4512918 -47000666 + A-rich Low_complexity Low_complexity 82 470 0 863 229 33 0 chrY 4513933 4514116 -46999468 + MER2 DNA MER2_type 1 189 -156 42429 41 23 1 chrY 4514148 4520106 -46993478 - L1PA2 LINE L1 -4 6151 60 886 178 13 0 chrY 4520106 4520258 -46993326 - FRAM SINE Alu -22 154 1 23 0 0 0 chrY 4520258 4520281 -46993303 + AT_rich Low_complexity Low_complexity 1 23 0 1298 121 0 53 chrY 4520303 4520509 -46993075 - AluSx SINE Alu -117 195 1 877 154 70 0 chrY 4520810 4520953 -46992631 + FRAM SINE Alu 11 163 -13 632 213 7 28 chrY 4521203 4521344 -46992240 - MLT1C LTR MaLR 0 467 330 2669 191 36 38 chrY 4521346 4521471 -46992113 - LTR39 LTR ERV1 -28 755 631 1813 175 3 0 chrY 4521471 4521763 -46991821 + AluJb SINE Alu 6 298 -14 2669 191 36 38 chrY 4521763 4522167 -46991417 - LTR39 LTR ERV1 -152 631 227 390 134 0 0 chrY 4522167 4522234 -46991350 + (TTCC)n Simple_repeat Simple_repeat 1 67 0 265 206 309 0 chrY 4522235 4522332 -46991252 - AluSp/q SINE Alu -5 298 172 1421 219 137 35 chrY 4522367 4522850 -46990734 - LTR10B LTR ERV1 -3 544 13 1148 104 0 0 chrY 4522870 4523014 -46990570 - AluSq/x SINE Alu -169 144 1 843 145 38 44 chrY 4523014 4523072 -46990512 - LTR39 LTR ERV1 -554 229 172 2007 138 3 10 chrY 4523072 4523377 -46990207 - AluSq SINE Alu -7 306 4 843 145 38 44 chrY 4523377 4523477 -46990107 - LTR39 LTR ERV1 -611 172 72 237 220 0 17 chrY 4523465 4523524 -46990060 - MER61C LTR ERV1 -66 368 311 * 437 151 75 32 chrY 4523519 4523612 -46989972 - LTR39 LTR ERV1 -686 97 1 2279 113 3 0 chrY 4523613 4523940 -46989644 + MER41B LTR ERV1 1 328 -307 1569 164 63 13 chrY 4523954 4524253 -46989331 + MER61A LTR ERV1 30 343 0 1046 113 0 0 chrY 4524253 4524387 -46989197 + MER41B LTR ERV1 323 456 -179 831 191 0 0 chrY 4524390 4524537 -46989047 + AluSg/x SINE Alu 165 311 -1 2112 122 3 0 chrY 4524551 4524839 -46988745 + AluSx SINE Alu 1 289 -23 1138 160 5 5 chrY 4524847 4525047 -46988537 + MER41B LTR ERV1 436 635 0 923 222 105 52 chrY 4525061 4525166 -46988418 - MLT1C LTR MaLR -145 322 224 420 20 0 0 chrY 4525166 4525215 -46988369 + (TG)n Simple_repeat Simple_repeat 2 50 0 923 222 105 52 chrY 4525215 4525351 -46988233 - MLT1C LTR MaLR -243 224 59 3374 123 123 4 chrY 4525351 4525635 -46987949 + MER41B LTR ERV1 4 253 -382 315 71 0 0 chrY 4525635 4525677 -46987907 + (CCCTAA)n Simple_repeat Simple_repeat 1 42 0 3374 123 123 4 chrY 4525677 4525955 -46987629 + MER41B LTR ERV1 253 633 -2 923 222 105 52 chrY 4525955 4526018 -46987566 - MLT1C LTR MaLR -408 59 1 189 221 0 103 chrY 4526163 4526231 -46987353 - MER5B DNA MER1_type -8 170 110 1567 181 3 3 chrY 4526259 4526546 -46987038 - AluSx SINE Alu -21 291 5 1026 198 138 48 chrY 4526637 4526905 -46986679 + AluJo SINE Alu 1 292 -10 4274 57 14 16 chrY 4527547 4528106 -46985478 + LTR6B LTR ERV1 1 558 0 3261 149 76 117 chrY 4528405 4529343 -46984241 + pTR5 LTR ERV1 1131 2293 -145 1776 120 40 4 chrY 4529363 4529673 -46983911 + AluSx SINE Alu 3 312 0 1547 146 0 11 chrY 4530371 4530631 -46982953 + AluSx SINE Alu 1 257 -55 1383 200 40 0 chrY 4530675 4530975 -46982609 - AluJo SINE Alu 0 312 1 2176 109 0 3 chrY 4531159 4531461 -46982123 + AluSx SINE Alu 1 301 -11 27 0 0 0 chrY 4531598 4531625 -46981959 + AT_rich Low_complexity Low_complexity 1 27 0 1839 160 0 0 chrY 4531625 4531912 -46981672 - AluSx SINE Alu -25 287 1 1509 211 20 0 chrY 4531934 4532232 -46981352 - AluJo SINE Alu -8 304 1 225 178 0 0 chrY 4532793 4532838 -46980746 + A-rich Low_complexity Low_complexity 1 45 0 448 200 62 62 chrY 4532879 4533009 -46980575 - AluJb SINE Alu -177 135 6 1032 140 34 0 chrY 4533185 4533364 -46980220 - L1MA5A LINE L1 -2 6295 6111 333 118 0 0 chrY 4533371 4533410 -46980174 + (TG)n Simple_repeat Simple_repeat 1 90 0 333 118 0 0 chrY 4533410 4533461 -46980123 + (TG)n Simple_repeat Simple_repeat 2 52 0 1798 154 0 0 chrY 4533461 4533747 -46979837 - AluSx SINE Alu -26 286 1 342 215 0 0 chrY 4533762 4533841 -46979743 + (CA)n Simple_repeat Simple_repeat 2 80 0 1648 161 18 0 chrY 4533855 4534128 -46979456 - AluJb SINE Alu -22 290 13 478 146 0 0 chrY 4534139 4534221 -46979363 - L1MA5A LINE L1 -177 6120 6039 256 132 0 0 chrY 4534476 4534514 -46979070 + MADE1 DNA Mariner 2 39 -41 1130 148 30 15 chrY 4534514 4534535 -46979049 - AluSg/x SINE Alu -12 298 279 201 39 0 0 chrY 4534535 4534561 -46979023 + (TG)n Simple_repeat Simple_repeat 1 26 0 1130 148 30 15 chrY 4534561 4534741 -46978843 - AluSg/x SINE Alu -31 279 94 1069 165 133 39 chrY 4534843 4535098 -46978486 + AluJo SINE Alu 15 293 -19 823 222 0 30 chrY 4535285 4535452 -46978132 - FRAM SINE Alu 0 166 5 1671 152 0 0 chrY 4535456 4535713 -46977871 - AluSq SINE Alu -54 259 3 216 0 0 0 chrY 4535726 4535750 -46977834 + (CA)n Simple_repeat Simple_repeat 2 25 0 633 124 38 0 chrY 4535752 4535857 -46977727 + L1PB4 LINE L1 5793 5901 -255 21 82 0 0 chrY 4535874 4535923 -46977661 + AT_rich Low_complexity Low_complexity 1 49 0 368 241 36 18 chrY 4535929 4536095 -46977489 + (TA)n Simple_repeat Simple_repeat 2 170 0 1085 157 77 119 chrY 4536156 4536468 -46977116 - AluJo SINE Alu -3 299 1 319 240 48 41 chrY 4537714 4537860 -46975724 + MER53 DNA DNA 37 183 -6 24 32 0 0 chrY 4538336 4538367 -46975217 + GC_rich Low_complexity Low_complexity 1 31 0 25 31 0 0 chrY 4538906 4538938 -46974646 + GC_rich Low_complexity Low_complexity 1 32 0 397 308 0 22 chrY 4540206 4540388 -46973196 + CT-rich Low_complexity Low_complexity 2 179 0 270 0 0 0 chrY 4540934 4540964 -46972620 + (TG)n Simple_repeat Simple_repeat 2 31 0 1758 128 0 8 chrY 4541444 4541709 -46971875 + AluSq SINE Alu 1 263 -50 1272 219 0 28 chrY 4542037 4542357 -46971227 + AluJo SINE Alu 1 311 -1 291 54 0 0 chrY 4542381 4542418 -46971166 + (TAAAA)n Simple_repeat Simple_repeat 2 38 0 1912 148 0 0 chrY 4542569 4542866 -46970718 + AluSg SINE Alu 1 297 -13 285 256 49 24 chrY 4543034 4543116 -46970468 + MIR SINE MIR 100 183 -79 478 269 60 0 chrY 4543153 4543320 -46970264 - L1MD3 LINE L1 -17 7978 7802 1777 148 13 20 chrY 4543321 4543626 -46969958 - AluJo SINE Alu -9 303 1 362 238 20 86 chrY 4543626 4543777 -46969807 - L1MD2 LINE L1 -176 6183 6043 2127 223 21 23 chrY 4543934 4544446 -46969138 - LTR10D LTR ERV1 -2 511 1 259 222 0 0 chrY 4544516 4544561 -46969023 - MLT1A1 LTR MaLR -5 360 316 962 99 0 0 chrY 4544561 4544692 -46968892 - AluY SINE Alu -13 298 168 1796 158 13 13 chrY 4544692 4545003 -46968581 - MLT1A1 LTR MaLR -54 311 1 205 96 0 58 chrY 4545341 4545393 -46968191 + (TTAAA)n Simple_repeat Simple_repeat 1 49 0 469 139 0 0 chrY 4545423 4545495 -46968089 - FLAM_A SINE Alu -26 116 45 220 342 34 26 chrY 4545497 4545614 -46967970 + L2 LINE L2 3191 3308 -5 330 219 114 38 chrY 4545614 4545719 -46967865 + MER81 DNA DNA 1 113 -1 2377 75 0 0 chrY 4545859 4546165 -46967419 - AluY SINE Alu -5 306 1 1344 198 10 17 chrY 4546170 4546468 -46967116 - AluJo SINE Alu -10 302 7 578 158 53 9 chrY 4546700 4546814 -46966770 + AluJb SINE Alu 177 295 -17 1394 180 3 49 chrY 4546823 4546949 -46966635 + AluJb SINE Alu 1 131 -181 1872 141 7 0 chrY 4546949 4547240 -46966344 - AluSg SINE Alu -17 293 1 1394 180 3 49 chrY 4547240 4547419 -46966165 + AluJb SINE Alu 131 292 -20 187 200 0 0 chrY 4547443 4547478 -46966106 + L2 LINE L2 3261 3295 -18 207 0 0 0 chrY 4547603 4547626 -46965958 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 1771 199 26 14 chrY 4547895 4548241 -46965343 + MLT1A1 LTR MaLR 14 363 -2 948 205 30 43 chrY 4548567 4548801 -46964783 + L1MB5 LINE L1 5936 6166 -8 1239 134 5 0 chrY 4548918 4549112 -46964472 - AluSg/x SINE Alu -19 293 99 2047 183 10 16 chrY 4549205 4549426 -46964158 - MLT1B LTR MaLR 0 390 170 1496 178 20 20 chrY 4549426 4549730 -46963854 - AluJo SINE Alu -8 304 1 2047 183 10 16 chrY 4549730 4549896 -46963688 - MLT1B LTR MaLR -220 170 5 240 268 0 0 chrY 4550042 4550098 -46963486 - MLT1C LTR MaLR 0 467 412 1268 187 8 8 chrY 4550110 4550356 -46963228 + L1MA8 LINE L1 5676 5921 -370 1528 170 21 10 chrY 4550358 4550646 -46962938 - AluJb SINE Alu -21 291 1 2006 135 0 6 chrY 4551061 4551373 -46962211 + AluSx SINE Alu 1 310 -2 990 140 0 28 chrY 4551726 4551905 -46961679 - FRAM SINE Alu -7 169 1 1694 176 10 13 chrY 4552041 4552348 -46961236 + AluJb SINE Alu 1 306 -6 3965 116 2 0 chrY 4552905 4553458 -46960126 - MER41A LTR ERV1 0 554 1 1718 132 62 10 chrY 4553629 4553949 -46959635 + AluSg SINE Alu 1 310 0 1299 209 14 17 chrY 4553962 4554254 -46959330 + AluJo SINE Alu 12 302 -10 21 0 0 0 chrY 4554285 4554306 -46959278 + AT_rich Low_complexity Low_complexity 1 21 0 1599 163 12 35 chrY 4554461 4554780 -46958804 + AluJb SINE Alu 1 312 0 244 233 0 17 chrY 4554783 4554843 -46958741 + A-rich Low_complexity Low_complexity 3 61 0 313 279 15 7 chrY 4554971 4555107 -46958477 - L1M4 LINE L1 -2910 3236 3100 736 195 31 130 chrY 4555500 4555593 -46957991 - MLT1C LTR MaLR -199 268 167 1754 151 3 7 chrY 4555593 4555897 -46957687 - AluSq SINE Alu -10 303 1 736 195 31 130 chrY 4555897 4556095 -46957489 - MLT1C LTR MaLR -300 167 6 1468 178 20 30 chrY 4556718 4557016 -46956568 - AluJo SINE Alu -17 295 1 1746 178 0 0 chrY 4557134 4557432 -46956152 - AluSx SINE Alu -14 298 1 2051 128 3 0 chrY 4557442 4557740 -46955844 - AluSp SINE Alu -14 299 1 2123 103 0 13 chrY 4558050 4558360 -46955224 - AluY SINE Alu -5 306 1 1347 185 56 0 chrY 4558602 4558872 -46954712 + AluJo SINE Alu 3 291 -21 198 0 0 0 chrY 4558872 4558894 -46954690 + (TTAA)n Simple_repeat Simple_repeat 1 22 0 1347 185 56 0 chrY 4558894 4558910 -46954674 + AluJo SINE Alu 291 305 -7 644 155 0 39 chrY 4558921 4559050 -46954534 + L1MB3 LINE L1 6059 6182 -1 780 191 8 0 chrY 4559087 4559218 -46954366 + FLAM_C SINE Alu 2 133 0 1720 164 0 7 chrY 4559545 4559844 -46953740 - AluJb SINE Alu -13 299 3 215 275 232 21 chrY 4560040 4560182 -46953402 - MIR SINE MIR -12 250 79 493 159 35 24 chrY 4560237 4560407 -46953177 + GA-rich Low_complexity Low_complexity 1 172 0 1054 190 0 5 chrY 4560506 4560701 -46952883 + AluJo SINE Alu 1 194 -118 1902 137 0 10 chrY 4560733 4561039 -46952545 + AluSg1 SINE Alu 1 303 -6 865 196 5 21 chrY 4561039 4561217 -46952367 + AluSg/x SINE Alu 136 312 0 906 210 44 0 chrY 4561221 4561426 -46952158 + MLT1B LTR MaLR 172 385 -5 1735 156 7 13 chrY 4561854 4562161 -46951423 - AluJo SINE Alu -7 305 1 1380 219 68 34 chrY 4562513 4562949 -46950635 - MLT1C LTR MaLR -19 444 1 339 226 226 5 chrY 4562959 4563149 -46950435 - MLT1C LTR MaLR -122 345 114 360 0 0 0 chrY 4563149 4563189 -46950395 + (TA)n Simple_repeat Simple_repeat 2 41 0 296 145 9 49 chrY 4563199 4563304 -46950280 - AluJo SINE Alu -166 136 1 421 240 10 0 chrY 4563317 4563421 -46950163 - MLT1C LTR MaLR -359 108 4 984 163 11 16 chrY 4564043 4564260 -46949324 - AluSg/x SINE Alu 0 315 100 274 263 0 0 chrY 4564441 4564498 -46949086 - MLT1J LTR MaLR -339 172 116 892 164 19 6 chrY 4565792 4565951 -46947633 + AluJb SINE Alu 129 289 -23 1793 217 36 36 chrY 4566039 4566217 -46947367 - L1MA9 LINE L1 -191 6121 5944 2522 111 3 14 chrY 4566217 4566585 -46946999 - THE1B LTR MaLR 0 364 1 1793 217 36 36 chrY 4566585 4566849 -46946735 - L1MA9 LINE L1 -367 5945 5679 952 191 156 13 chrY 4567235 4567460 -46946124 + AluSg1 SINE Alu 9 265 -44 182 191 21 0 chrY 4567563 4567610 -46945974 + GA-rich Low_complexity Low_complexity 1 48 0 437 244 0 13 chrY 4567722 4567878 -46945706 + GA-rich Low_complexity Low_complexity 1 154 0 213 132 0 0 chrY 4568278 4568316 -46945268 + (TC)n Simple_repeat Simple_repeat 2 39 0 1987 164 40 3 chrY 4569204 4569552 -46944032 - MLT1A1 LTR MaLR 0 365 5 1098 118 0 0 chrY 4570238 4570391 -46943193 + AluSx SINE Alu 5 157 -155 1574 185 0 17 chrY 4570671 4570969 -46942615 - AluSx SINE Alu -19 293 1 7542 37 2 0 chrY 4571027 4572408 -46941176 - L1PA4 LINE L1 0 6155 4774 27 49 0 0 chrY 4572484 4572525 -46941059 + AT_rich Low_complexity Low_complexity 1 41 0 854 189 0 0 chrY 4572530 4572694 -46940890 - AluJb SINE Alu -26 286 123 25 31 0 0 chrY 4572694 4572726 -46940858 + AT_rich Low_complexity Low_complexity 1 32 0 805 268 9 5 chrY 4572804 4573017 -46940567 - AluJo SINE Alu -98 214 1 698 197 0 0 chrY 4573325 4573447 -46940137 + FLAM_C SINE Alu 5 126 -7 1237 192 0 0 chrY 4573463 4573687 -46939897 + AluSg/x SINE Alu 87 310 -2 1749 177 0 0 chrY 4573896 4574184 -46939400 + AluJb SINE Alu 5 292 -20 619 242 43 54 chrY 4574701 4574887 -46938697 - MER20 DNA MER1_type -35 184 1 360 209 52 29 chrY 4574888 4575060 -46938524 + (TAGA)n Simple_repeat Simple_repeat 3 178 0 700 195 65 18 chrY 4575562 4575731 -46937853 - MER20 DNA MER1_type 0 219 43 198 0 0 0 chrY 4575829 4575851 -46937733 + (TGGA)n Simple_repeat Simple_repeat 1 22 0 426 182 22 37 chrY 4575884 4576137 -46937447 + (TAGA)n Simple_repeat Simple_repeat 1 249 0 192 77 0 0 chrY 4576147 4576173 -46937411 + (TGGA)n Simple_repeat Simple_repeat 3 28 0 2023 148 7 0 chrY 4576282 4576587 -46936997 - AluSx SINE Alu -5 307 1 2337 98 0 0 chrY 4576635 4576932 -46936652 - AluY SINE Alu -14 297 1 587 267 37 37 chrY 4577241 4577432 -46936152 - MER20 DNA MER1_type -27 192 2 334 197 58 15 chrY 4577531 4577668 -46935916 + (TAGA)n Simple_repeat Simple_repeat 3 145 0 676 225 70 47 chrY 4577705 4577918 -46935666 - MER20 DNA MER1_type -1 218 1 218 169 42 68 chrY 4577919 4578037 -46935547 + (TAGA)n Simple_repeat Simple_repeat 3 117 0 26 50 0 0 chrY 4578106 4578146 -46935438 + AT_rich Low_complexity Low_complexity 1 40 0 186 43 0 0 chrY 4578999 4579022 -46934562 + (CAAAAA)n Simple_repeat Simple_repeat 2 24 0 1439 203 0 20 chrY 4579336 4579631 -46933953 - AluJo SINE Alu -21 291 3 496 229 110 0 chrY 4579637 4579755 -46933829 - FLAM_C SINE Alu -11 132 2 544 208 0 0 chrY 4579790 4579886 -46933698 + AluSg/x SINE Alu 170 265 -45 1964 193 23 44 chrY 4579897 4580375 -46933209 - L1MB3 LINE L1 -56 6127 5660 1810 160 13 7 chrY 4580389 4580696 -46932888 - AluSx SINE Alu -3 309 1 286 189 0 0 chrY 4580939 4580992 -46932592 - MER4-int LTR ERV1 -5434 1164 1112 209 261 22 0 chrY 4580992 4581038 -46932546 + (CACG)n Simple_repeat Simple_repeat 3 49 0 1879 185 19 29 chrY 4581150 4581561 -46932023 - L1PB4 LINE L1 -1 6155 5749 1706 179 0 13 chrY 4581592 4581893 -46931691 + AluJo SINE Alu 11 307 -5 1442 207 14 30 chrY 4582467 4582762 -46930822 - AluJo SINE Alu -17 295 6 748 169 0 0 chrY 4582937 4583055 -46930529 + AluJo/FLAM SINE Alu 2 119 -193 1383 199 33 11 chrY 4583055 4583326 -46930258 - AluJo SINE Alu -17 295 19 561 181 17 17 chrY 4583332 4583448 -46930136 - AluJo SINE Alu -166 146 31 1809 179 0 3 chrY 4584132 4584428 -46929156 - AluJo SINE Alu -14 298 4 229 185 31 0 chrY 4584818 4584883 -46928701 + CT-rich Low_complexity Low_complexity 4 70 0 300 53 0 0 chrY 4585241 4585279 -46928305 + (GA)n Simple_repeat Simple_repeat 1 38 0 1171 145 0 5 chrY 4585809 4585995 -46927589 + AluSg/x SINE Alu 128 312 0 1587 168 50 17 chrY 4586418 4586716 -46926868 - AluJo SINE Alu -4 308 1 1435 184 75 4 chrY 4587114 4587234 -46926350 + AluJb SINE Alu 1 111 -201 359 41 20 0 chrY 4587234 4587283 -46926301 + (TAA)n Simple_repeat Simple_repeat 2 51 0 1435 184 75 4 chrY 4587283 4587428 -46926156 + AluJb SINE Alu 111 285 -27 1876 209 19 0 chrY 4587864 4588242 -46925342 - MLT1B LTR MaLR -4 386 2 963 249 63 20 chrY 4588345 4588695 -46924889 + MLT1A1 LTR MaLR 1 365 0 1005 107 4 179 chrY 4588949 4589183 -46924401 - 7SK RNA RNA 0 193 1 965 162 6 6 chrY 4590935 4591117 -46922467 + L1PB3 LINE L1 5830 6011 -143 1501 173 71 0 chrY 4591538 4591792 -46921792 + AluJo SINE Alu 28 299 -13 30 69 0 0 chrY 4591855 4591913 -46921671 + AT_rich Low_complexity Low_complexity 1 58 0 411 38 0 0 chrY 4592030 4592083 -46921501 + (TG)n Simple_repeat Simple_repeat 1 53 0 1612 159 19 0 chrY 4592115 4592386 -46921198 - AluSx SINE Alu -19 293 18 1668 199 0 10 chrY 4592590 4592897 -46920687 - AluJo SINE Alu -8 304 1 1955 119 37 14 chrY 4592953 4593248 -46920336 - AluSg SINE Alu -8 302 1 1901 123 20 20 chrY 4593619 4593921 -46919663 - AluSx SINE Alu -10 302 1 2103 108 0 51 chrY 4593933 4594248 -46919336 - AluY SINE Alu -4 307 9 560 193 0 83 chrY 4594250 4594395 -46919189 - AluJo SINE Alu -178 134 2 913 222 43 32 chrY 4594831 4595110 -46918474 - Charlie5 DNA MER1_type 0 2624 2343 753 187 0 8 chrY 4595121 4595255 -46918329 + FLAM_C SINE Alu 1 133 0 1102 130 17 74 chrY 4595279 4595510 -46918074 - MER39 LTR ERV1 -84 623 406 906 184 92 10 chrY 4595523 4595719 -46917865 - MSTC LTR MaLR -50 378 167 618 164 8 60 chrY 4595755 4595889 -46917695 - L1PB2 LINE L1 -3 6148 6022 1967 147 3 7 chrY 4595890 4596197 -46917387 - AluSx SINE Alu -6 306 1 2143 138 0 0 chrY 4596434 4596732 -46916852 - AluSx SINE Alu -5 307 10 2078 134 3 0 chrY 4597035 4597327 -46916257 - AluSg SINE Alu -17 293 1 1755 199 0 0 chrY 4597327 4597665 -46915919 - AluSx SINE Alu 0 312 1 1739 191 0 0 chrY 4597789 4598088 -46915496 - AluJo SINE Alu -9 303 5 316 146 49 0 chrY 4598088 4598170 -46915414 + C-rich Low_complexity Low_complexity 1 86 0 182 174 14 43 chrY 4598174 4598243 -46915341 + T-rich Low_complexity Low_complexity 3 69 0 1320 152 22 30 chrY 4598572 4598803 -46914781 - MER46A DNA MER2_type -7 229 1 700 186 8 0 chrY 4598922 4599046 -46914538 - AluJb SINE Alu -179 133 9 251 313 35 28 chrY 4599188 4599332 -46914252 - L1MC5 LINE L1 -54 7907 7763 306 113 0 113 chrY 4599426 4599488 -46914096 + AluJo SINE Alu 85 139 -163 417 237 14 3 chrY 4599490 4599645 -46913939 + MER58A DNA MER1_type 22 224 0 1326 216 97 8 chrY 4599677 4600028 -46913556 + L1MB3 LINE L1 5790 6171 -12 267 228 44 7 chrY 4600034 4600170 -46913414 + (TA)n Simple_repeat Simple_repeat 2 142 0 210 197 59 46 chrY 4600150 4600302 -46913282 + (TATAA)n Simple_repeat Simple_repeat 4 157 0 * 270 294 17 6 chrY 4600379 4600556 -46913028 + (TA)n Simple_repeat Simple_repeat 1 179 0 21 0 0 0 chrY 4600561 4600582 -46913002 + AT_rich Low_complexity Low_complexity 1 21 0 695 168 10 122 chrY 4601378 4601438 -46912146 - L1MB5 LINE L1 -1 6179 6114 1801 174 10 3 chrY 4601438 4601732 -46911852 - AluJo SINE Alu -16 296 1 695 168 10 122 chrY 4601732 4601867 -46911717 - L1MB5 LINE L1 -66 6114 6006 459 215 116 16 chrY 4601867 4601988 -46911596 - MLT1C LTR MaLR -327 140 8 1386 222 36 13 chrY 4602946 4603110 -46910474 - AluJo SINE Alu -3 309 133 2038 124 7 0 chrY 4603110 4603392 -46910192 - AluSq SINE Alu -20 293 10 1386 222 36 13 chrY 4603392 4603529 -46910055 - AluJo SINE Alu -179 133 1 39 68 0 0 chrY 4603906 4603980 -46909604 + AT_rich Low_complexity Low_complexity 1 74 0 1147 158 87 0 chrY 4604301 4604497 -46909087 - LTR36 LTR ERV1 0 611 399 1737 150 26 0 chrY 4604650 4604917 -46908667 - AluSg SINE Alu -36 274 1 27 49 0 0 chrY 4604982 4605023 -46908561 + AT_rich Low_complexity Low_complexity 1 41 0 1769 167 40 12 chrY 4605030 4605359 -46908225 - L1PA15 LINE L1 -13 6152 5815 615 182 9 0 chrY 4606119 4606229 -46907355 + HY1 scRNA scRNA 1 111 -1 4178 121 16 3 chrY 4606414 4606531 -46907053 - MER41B LTR ERV1 0 635 521 1911 131 21 0 chrY 4606531 4606813 -46906771 + AluSc SINE Alu 22 309 0 4178 121 16 3 chrY 4606813 4607322 -46906262 - MER41B LTR ERV1 -114 521 1 822 147 11 17 chrY 4608347 4608524 -46905060 + (TCCA)n Simple_repeat Simple_repeat 2 177 0 485 241 29 3 chrY 4608618 4608967 -46904617 + (TCTA)n Simple_repeat Simple_repeat 1 358 0 1716 117 72 19 chrY 4609101 4609365 -46904219 + AluSp SINE Alu 1 278 -35 216 0 0 0 chrY 4609372 4609396 -46904188 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 21 36 0 0 chrY 4609667 4609695 -46903889 + AT_rich Low_complexity Low_complexity 1 28 0 222 176 0 59 chrY 4609762 4609830 -46903754 + (TATAA)n Simple_repeat Simple_repeat 1 64 0 1878 139 3 10 chrY 4609857 4610152 -46903432 + AluSq SINE Alu 3 295 -18 1476 216 0 16 chrY 4611411 4611717 -46901867 + AluJo SINE Alu 1 301 -11 388 258 8 25 chrY 4612046 4612166 -46901418 - Charlie1 DNA MER1_type -4 2757 2640 22 56 0 0 chrY 4612175 4612211 -46901373 + AT_rich Low_complexity Low_complexity 1 36 0 1592 154 16 46 chrY 4612309 4612615 -46900969 + AluJb SINE Alu 1 297 -15 308 339 6 17 chrY 4612617 4612791 -46900793 - Charlie1 DNA MER1_type -240 2521 2350 28 0 0 0 chrY 4613017 4613045 -46900539 + AT_rich Low_complexity Low_complexity 1 28 0 1898 142 14 14 chrY 4613045 4613334 -46900250 - AluSx SINE Alu -23 289 1 1899 149 13 16 chrY 4613698 4614006 -46899578 - AluJo SINE Alu -4 308 2 1661 168 7 46 chrY 4614008 4614311 -46899273 - AluJo SINE Alu -19 293 3 2021 147 3 0 chrY 4614313 4614606 -46898978 - AluJo SINE Alu -18 294 1 1145 240 102 37 chrY 4615597 4616030 -46897554 - MLT1C LTR MaLR -1 466 6 1717 168 145 18 chrY 4616317 4616697 -46896887 + MSTA LTR MaLR 1 428 0 23 54 0 0 chrY 4616746 4616783 -46896801 + AT_rich Low_complexity Low_complexity 1 37 0 1002 194 20 10 chrY 4617038 4617234 -46896350 + AluJo SINE Alu 97 294 -18 1414 186 0 77 chrY 4617333 4617644 -46895940 + AluJo SINE Alu 5 291 -21 446 129 0 0 chrY 4617882 4617944 -46895640 - AluSg/x SINE Alu -38 274 213 1788 169 4 0 chrY 4618048 4618321 -46895263 - AluSx SINE Alu -38 274 1 423 149 0 0 chrY 4618321 4618395 -46895189 + (TACTG)n Simple_repeat Simple_repeat 4 77 0 1030 215 14 9 chrY 4618417 4618640 -46894944 - AluJb SINE Alu -2 310 87 5529 138 9 74 chrY 4618644 4619454 -46894130 - L1MA5A LINE L1 0 6297 5436 1850 158 3 26 chrY 4619454 4619764 -46893820 + AluJb SINE Alu 2 304 -8 5529 138 9 74 chrY 4619764 4619831 -46893753 - L1MA5A LINE L1 -861 5436 5366 1983 126 11 3 chrY 4619831 4620117 -46893467 - AluSq SINE Alu -3 310 23 5529 138 9 74 chrY 4620117 4620336 -46893248 - L1MA5A LINE L1 -931 5366 5271 1625 189 7 13 chrY 4622011 4622318 -46891266 + AluJo SINE Alu 1 305 -7 207 0 0 0 chrY 4622318 4622341 -46891243 + (TG)n Simple_repeat Simple_repeat 2 24 0 228 35 0 0 chrY 4622363 4622392 -46891192 + (CA)n Simple_repeat Simple_repeat 2 30 0 476 183 119 71 chrY 4622740 4622866 -46890718 - FLAM_C SINE Alu -1 132 1 1459 184 24 24 chrY 4623369 4623663 -46889921 - AluJo SINE Alu -14 298 5 216 62 42 21 chrY 4623753 4623801 -46889783 + (CAA)n Simple_repeat Simple_repeat 3 51 0 1505 168 7 46 chrY 4624774 4625059 -46888525 - AluSx SINE Alu -10 302 29 658 283 5 24 chrY 4625145 4625350 -46888234 - L1MB8 LINE L1 0 6178 5978 524 65 0 0 chrY 4625350 4625412 -46888172 - Charlie3 DNA MER1_type -4 2706 2645 * 1524 158 12 20 chrY 4625409 4625656 -46887928 - Charlie3 DNA MER1_type -2464 246 2 1306 226 10 3 chrY 4625657 4625966 -46887618 - L1MB8 LINE L1 -193 5985 5675 1255 219 90 42 chrY 4626308 4626718 -46886866 - MLT1C LTR MaLR -16 451 22 1101 209 85 42 chrY 4626749 4627079 -46886505 - MLT1C LTR MaLR -123 344 1 2822 188 38 45 chrY 4627480 4627656 -46885928 - L1MA8 LINE L1 -1 6290 6114 866 144 8 0 chrY 4627656 4627781 -46885803 - FLAM_C SINE Alu -6 127 2 2822 188 38 45 chrY 4627781 4628029 -46885555 - L1MA8 LINE L1 -177 6114 5866 1390 181 96 4 chrY 4628029 4628310 -46885274 - AluSx SINE Alu -3 309 3 2822 188 38 45 chrY 4628310 4628593 -46884991 - L1MA8 LINE L1 -425 5866 5587 32 57 0 0 chrY 4629210 4629263 -46884321 + AT_rich Low_complexity Low_complexity 1 53 0 376 178 25 6 chrY 4629398 4629555 -46884029 + (TA)n Simple_repeat Simple_repeat 1 160 0 1594 208 3 3 chrY 4629564 4629862 -46883722 + AluJo SINE Alu 2 299 -13 656 219 16 1 chrY 4629862 4630117 -46883467 - Tigger3(Golem) DNA MER2_type -2738 291 1 232 94 0 125 chrY 4630120 4630138 -46883446 + (CA)n Simple_repeat Simple_repeat 2 21 -36 1725 188 3 7 chrY 4630138 4630430 -46883154 - AluJb SINE Alu -17 295 5 232 94 0 125 chrY 4630430 4630475 -46883109 + (CA)n Simple_repeat Simple_repeat 21 57 0 235 189 38 0 chrY 4630510 4630563 -46883021 + L1MC4 LINE L1 6649 6703 -1339 280 133 33 44 chrY 4630564 4630654 -46882930 + (TATATG)n Simple_repeat Simple_repeat 2 90 0 252 155 141 0 chrY 4630656 4630727 -46882857 - L1MC3 LINE L1 -1137 6648 6568 400 174 0 37 chrY 4630731 4630840 -46882744 + (TATATG)n Simple_repeat Simple_repeat 6 110 0 267 297 25 55 chrY 4631469 4631607 -46881977 + MIR3 SINE MIR 28 162 -46 955 168 9 24 chrY 4632178 4632376 -46881208 - L1MA4A LINE L1 -342 5963 5766 864 159 8 0 chrY 4632393 4632525 -46881059 - FLAM_C SINE Alu 0 133 1 298 116 0 0 chrY 4632525 4632568 -46881016 - L1MA4A LINE L1 -505 5786 5744 1660 208 0 0 chrY 4632785 4633078 -46880506 + AluSx SINE Alu 3 295 -17 2020 122 0 0 chrY 4633079 4633350 -46880234 + AluSc SINE Alu 22 292 -17 271 278 28 0 chrY 4633381 4633453 -46880131 - MIR SINE MIR -119 143 70 3105 157 10 40 chrY 4633466 4633520 -46880064 - L1MA4A LINE L1 -27 6276 6222 2003 144 0 16 chrY 4633520 4633832 -46879752 + AluSg1 SINE Alu 1 307 -2 3105 157 10 40 chrY 4633832 4634182 -46879402 - L1MA4A LINE L1 -81 6222 5890 1805 159 44 0 chrY 4634182 4634478 -46879106 - AluSx SINE Alu -3 309 1 3105 157 10 40 chrY 4634478 4634670 -46878914 - L1MA4A LINE L1 -413 5890 5694 2008 153 0 10 chrY 4634808 4635108 -46878476 - AluSx SINE Alu -13 299 3 532 226 50 91 chrY 4635254 4635486 -46878098 - L1MC4a LINE L1 -1759 6049 5830 2104 129 0 0 chrY 4635486 4635781 -46877803 - AluSx SINE Alu -17 295 1 532 226 50 91 chrY 4635781 4635845 -46877739 - L1MC4a LINE L1 -1978 5830 5765 1692 172 0 14 chrY 4635862 4636152 -46877432 - AluJo SINE Alu -26 286 1 33 0 0 0 chrY 4636993 4637026 -46876558 + AT_rich Low_complexity Low_complexity 1 33 0 2073 145 0 0 chrY 4638101 4638405 -46875179 - AluSc SINE Alu -5 304 1 1960 122 18 4 chrY 4638462 4638768 -46874816 - AluSx SINE Alu 0 310 1 2153 105 14 3 chrY 4638976 4639272 -46874312 + AluSc SINE Alu 1 299 -10 1513 202 24 3 chrY 4639521 4639808 -46873776 + AluJb SINE Alu 1 293 -19 1781 128 4 0 chrY 4639811 4640062 -46873522 + AluSq SINE Alu 1 252 -61 189 0 0 0 chrY 4640601 4640622 -46872962 + (TG)n Simple_repeat Simple_repeat 2 22 0 1686 180 3 30 chrY 4641012 4641312 -46872272 + AluJb SINE Alu 1 292 -20 1636 148 35 35 chrY 4642456 4642746 -46870838 + AluJb SINE Alu 14 303 -9 726 227 8 0 chrY 4642817 4642945 -46870639 + FLAM_C SINE Alu 2 130 -3 712 140 0 9 chrY 4643261 4643368 -46870216 + U6 snRNA snRNA 2 107 0 2010 133 7 7 chrY 4643947 4644255 -46869329 + AluSx SINE Alu 3 310 -2 245 219 110 0 chrY 4646196 4646269 -46867315 - MER58 DNA MER1_type 0 2420 2340 522 227 0 0 chrY 4646296 4646393 -46867191 + AluJo SINE Alu 6 102 -210 30 45 0 0 chrY 4646754 4646798 -46866786 + AT_rich Low_complexity Low_complexity 1 44 0 810 176 0 16 chrY 4646966 4647091 -46866493 + AluJo SINE Alu 90 212 -100 342 0 0 0 chrY 4647093 4647131 -46866453 + (TG)n Simple_repeat Simple_repeat 2 39 0 204 144 68 34 chrY 4647131 4647249 -46866335 + (TAGA)n Simple_repeat Simple_repeat 2 123 0 1075 177 32 45 chrY 4647281 4647501 -46866083 - MER20 DNA MER1_type -1 218 2 648 306 111 34 chrY 4647946 4648461 -46865123 + L2 LINE L2 2729 3286 -27 2217 110 3 7 chrY 4648641 4648950 -46864634 + AluSq SINE Alu 1 308 -5 1694 178 0 14 chrY 4649648 4649958 -46863626 + AluJo SINE Alu 2 307 0 277 257 0 54 chrY 4650006 4650080 -46863504 + MER63 DNA MER1_type 672 741 -95 21298 110 22 10 chrY 4650080 4653918 -46859666 - HERV9 LTR ERV1 -4429 3970 1 4647 71 138 133 chrY 4653918 4654740 -46858844 - LTR12 LTR ERV1 0 826 1 3188 203 27 34 chrY 4654741 4655022 -46858562 + MER4D LTR ERV1 195 476 -427 2069 137 10 3 chrY 4655022 4655328 -46858256 + AluSq SINE Alu 1 308 -5 3188 203 27 34 chrY 4655328 4655423 -46858161 + MER4D LTR ERV1 476 570 -333 4766 144 27 23 chrY 4655423 4656199 -46857385 + MER4E LTR ERV1 1 779 0 3188 203 27 34 chrY 4656199 4656535 -46857049 + MER4D LTR ERV1 570 903 0 1168 169 41 9 chrY 4656711 4656930 -46856654 - MER41C LTR ERV1 0 554 329 1276 182 37 21 chrY 4656994 4657290 -46856294 + LTR10B LTR ERV1 306 547 0 1795 241 97 65 chrY 4657420 4658131 -46855453 + HERV17 LTR ERV1 405 1138 -6647 5675 268 23 28 chrY 4658193 4660136 -46853448 + HERV17 LTR ERV1 937 3284 -3963 584 248 0 0 chrY 4660136 4660249 -46853335 + HERV17 LTR ERV1 1062 1174 -7452 6670 28 1 11 chrY 4660253 4661040 -46852544 - L1PA3 LINE L1 -2 6153 5375 3812 48 15 1 chrY 4661040 4661557 -46852027 + L1M LINE L1 4863 5387 -796 7546 280 50 60 chrY 4661557 4665257 -46848327 + HERV17 LTR ERV1 2985 6649 0 1214 174 53 24 chrY 4665339 4665632 -46847952 + LTR10B LTR ERV1 306 547 0 * 1845 180 56 3 chrY 4665632 4665967 -46847617 - MER41C LTR ERV1 -201 353 1 2948 159 20 70 chrY 4666019 4666158 -46847426 - MER1A DNA MER1_type -2173 527 383 2190 141 0 3 chrY 4666158 4666471 -46847113 - AluSp SINE Alu -1 312 1 2948 159 20 70 chrY 4666471 4666819 -46846765 - MER1A DNA MER1_type -2317 383 69 2909 13 0 0 chrY 4666819 4667137 -46846447 - AluYb8 SINE Alu 0 318 1 2948 159 20 70 chrY 4667137 4667203 -46846381 - MER1A DNA MER1_type -2631 69 1 467 179 0 0 chrY 4667582 4667666 -46845918 - MER4B LTR ERV1 -163 447 364 23 0 0 0 chrY 4667678 4667701 -46845883 + AT_rich Low_complexity Low_complexity 1 23 0 302 248 50 0 chrY 4667703 4667804 -46845780 + CT-rich Low_complexity Low_complexity 3 108 0 375 182 23 45 chrY 4667825 4668001 -46845583 + CT-rich Low_complexity Low_complexity 3 174 0 1470 186 65 4 chrY 4668601 4668876 -46844708 - AluSx SINE Alu -19 293 2 236 302 50 36 chrY 4668883 4669022 -46844562 + LTR16C LTR ERVL 349 489 -2 2784 106 5 13 chrY 4669268 4669646 -46843938 + THE1C LTR MaLR 1 375 0 252 375 0 32 chrY 4669701 4669917 -46843667 + L1P LINE L1 4884 5092 -1054 293 307 58 61 chrY 4670121 4670466 -46843118 + L1ME LINE L1 5317 5660 -502 555 302 65 42 chrY 4670804 4671112 -46842472 + L2 LINE L2 2995 3309 -4 1369 149 0 9 chrY 4671364 4671623 -46841961 - AluSg/x SINE Alu 0 327 71 13787 135 11 23 chrY 4671623 4674252 -46839332 + L1P3 LINE L1 671 3284 -3177 586 126 29 58 chrY 4674452 4674555 -46839029 + AluS SINE Alu 1 100 -212 698 264 44 0 chrY 4674967 4675149 -46838435 - MER20 DNA MER1_type 0 219 30 2439 139 25 5 chrY 4675960 4676328 -46837256 - THE1C LTR MaLR 0 375 1 2011 121 55 0 chrY 4677500 4677789 -46835795 - AluSx SINE Alu -4 308 4 2013 187 19 8 chrY 4677924 4678283 -46835301 - MLT1A1 LTR MaLR -2 363 1 2012 164 0 0 chrY 4678695 4679011 -46834573 - AluSx SINE Alu 0 316 1 245 29 29 0 chrY 4679345 4679379 -46834205 + (TAA)n Simple_repeat Simple_repeat 2 36 0 1802 150 0 33 chrY 4680592 4680899 -46832685 + AluJo SINE Alu 13 309 -3 993 219 24 5 chrY 4681624 4681834 -46831750 + AluJb SINE Alu 73 286 -26 341 236 19 19 chrY 4681834 4681991 -46831593 + (TA)n Simple_repeat Simple_repeat 2 158 0 293 231 7 0 chrY 4682012 4682159 -46831425 + (TA)n Simple_repeat Simple_repeat 1 148 0 21 0 0 0 chrY 4682207 4682228 -46831356 + AT_rich Low_complexity Low_complexity 1 21 0 407 108 0 83 chrY 4684211 4684368 -46829216 + (TA)n Simple_repeat Simple_repeat 2 145 0 1308 180 47 77 chrY 4684385 4684507 -46829077 + AluJo SINE Alu 1 125 -187 1937 156 0 10 chrY 4684507 4684814 -46828770 - AluSg SINE Alu -6 304 1 1308 180 47 77 chrY 4684814 4684991 -46828593 + AluJo SINE Alu 125 291 -21 509 174 0 31 chrY 4685163 4685261 -46828323 + L1PB4 LINE L1 6058 6152 -4 668 224 85 13 chrY 4685758 4685780 -46827804 - MLT1A1 LTR MaLR 0 390 371 2277 134 64 0 chrY 4685780 4686122 -46827462 - THE1B LTR MaLR 0 364 1 668 224 85 13 chrY 4686122 4686297 -46827287 - MLT1A1 LTR MaLR -19 371 178 345 82 0 0 chrY 4686297 4686346 -46827238 + (GA)n Simple_repeat Simple_repeat 1 49 0 1019 250 51 46 chrY 4686374 4686745 -46826839 + MLT2B1 LTR ERVL 3 428 -92 708 178 59 15 chrY 4686745 4686880 -46826704 - AluJo SINE Alu -49 263 123 300 274 118 0 chrY 4686929 4687031 -46826553 + L2 LINE L2 3197 3310 -3 296 277 42 25 chrY 4687317 4687436 -46826148 - MLT1H LTR MaLR 0 549 429 * 484 236 18 0 chrY 4687431 4687541 -46826043 + MER20 DNA MER1_type 90 201 -18 237 152 22 0 chrY 4687597 4687643 -46825941 + T-rich Low_complexity Low_complexity 3 49 0 568 173 19 10 chrY 4687643 4687747 -46825837 - U6 snRNA snRNA -2 105 1 427 312 27 25 chrY 4687972 4688196 -46825388 - MLT1H LTR MaLR -3 548 321 651 208 92 82 chrY 4688218 4688521 -46825063 + MLT1H1 LTR MaLR 242 547 -8 191 222 93 0 chrY 4689766 4689820 -46823764 - L2 LINE L2 0 3313 3255 500 126 29 46 chrY 4690280 4690455 -46823129 + (TAGA)n Simple_repeat Simple_repeat 3 174 0 343 187 23 41 chrY 4690505 4690676 -46822908 + (TAGA)n Simple_repeat Simple_repeat 3 170 0 1419 138 14 0 chrY 4690854 4691071 -46822513 + L1MA7 LINE L1 5682 5901 -390 1465 48 4 83 chrY 4691071 4691301 -46822283 - LTR66 LTR ERVL 0 610 399 255 0 86 74 chrY 4691311 4691392 -46822192 + (TA)n Simple_repeat Simple_repeat 2 83 0 2610 107 85 17 chrY 4691399 4691810 -46821774 - LTR66 LTR ERVL -168 442 4 672 226 45 6 chrY 4691868 4692045 -46821539 - MER20 DNA MER1_type -6 213 30 623 259 0 0 chrY 4692187 4692318 -46821266 + FLAM_A SINE Alu 1 131 -2 1406 185 83 4 chrY 4692321 4692597 -46820987 + AluJb SINE Alu 1 298 -14 7411 161 25 10 chrY 4692597 4693850 -46819734 + L1PA5 LINE L1 2 1274 -4872 * 20523 66 3 1 chrY 4693841 4698399 -46815185 + L1PA5 LINE L1 1490 6151 -3 3954 148 21 14 chrY 4698541 4699170 -46814414 + MER41B LTR ERV1 1 633 -2 1526 184 0 53 chrY 4699578 4699771 -46813813 - AluJo SINE Alu -9 303 132 2069 118 0 39 chrY 4699771 4700077 -46813507 + AluY SINE Alu 5 298 -13 1526 184 0 53 chrY 4700077 4700203 -46813381 - AluJo SINE Alu -180 132 1 1875 194 20 17 chrY 4700212 4700615 -46812969 - L1MA3 LINE L1 0 6305 5902 1995 141 35 55 chrY 4700638 4700857 -46812727 - L1PB3 LINE L1 0 6154 5943 1797 168 0 3 chrY 4700857 4701143 -46812441 - AluJb SINE Alu -23 289 5 1995 141 35 55 chrY 4701143 4701271 -46812313 - L1PB3 LINE L1 -211 5943 5814 756 226 83 6 chrY 4701298 4701479 -46812105 + MER20 DNA MER1_type 25 219 0 1693 173 53 0 chrY 4701484 4701767 -46811817 + AluSq SINE Alu 1 298 -15 1520 193 48 34 chrY 4701958 4702090 -46811494 - L1MA9 LINE L1 0 6312 6183 1971 145 7 3 chrY 4702090 4702387 -46811197 - AluSq SINE Alu -15 298 1 1520 193 48 34 chrY 4702387 4702612 -46810972 - L1MA9 LINE L1 -129 6183 5950 * 1731 188 3 87 chrY 4702609 4703145 -46810439 + L1MA9 LINE L1 4926 5419 -805 2166 137 0 13 chrY 4703145 4703460 -46810124 + AluSx SINE Alu 2 312 0 1731 188 3 87 chrY 4703460 4703519 -46810065 + L1MA9 LINE L1 5419 5481 -743 412 240 29 0 chrY 4703859 4703963 -46809621 + L1MA9 LINE L1 6019 6125 -187 * 516 116 0 23 chrY 4703951 4704037 -46809547 + L1PB1 LINE L1 5708 5791 -360 207 0 0 0 chrY 4704042 4704065 -46809519 + (GA)n Simple_repeat Simple_repeat 2 24 0 739 152 0 0 chrY 4704066 4704171 -46809413 - AluSq/x SINE Alu -201 111 7 2503 133 3 3 chrY 4704176 4704544 -46809040 + L1PB1 LINE L1 5782 6149 -2 570 257 22 28 chrY 4704574 4704753 -46808831 + L1MA9 LINE L1 6097 6274 -38 1617 184 13 25 chrY 4704776 4705092 -46808492 + AluJo SINE Alu 1 312 0 207 0 0 0 chrY 4705819 4705842 -46807742 + (GAAA)n Simple_repeat Simple_repeat 2 24 0 3075 72 2 25 chrY 4705981 4706384 -46807200 - L1PA10 LINE L1 -294 5874 5481 1350 98 62 0 chrY 4706389 4706582 -46807002 + L1PA10 LINE L1 5960 6164 -4 2422 58 0 7 chrY 4706819 4707113 -46806471 - AluY SINE Alu -17 294 3 189 0 0 0 chrY 4707119 4707140 -46806444 + (T)n Simple_repeat Simple_repeat 1 21 0 1699 233 6 0 chrY 4707140 4707496 -46806088 + L1MB5 LINE L1 5816 6173 -1 1765 160 4 4 chrY 4707503 4707805 -46805779 + AluSx SINE Alu 1 302 0 1181 88 0 11 chrY 4707883 4708065 -46805519 + (TTCC)n Simple_repeat Simple_repeat 1 180 0 685 157 7 14 chrY 4708070 4708210 -46805374 + CT-rich Low_complexity Low_complexity 4 142 0 552 126 0 0 chrY 4709122 4709209 -46804375 + (GGGA)n Simple_repeat Simple_repeat 4 90 0 1713 177 17 20 chrY 4709670 4709970 -46803614 - AluJo SINE Alu -6 306 8 1899 177 0 3 chrY 4709988 4710287 -46803297 - AluSx SINE Alu -14 298 1 842 167 20 13 chrY 4710292 4710442 -46803142 - MLT1A1 LTR MaLR -214 151 1 1564 190 4 14 chrY 4711051 4711330 -46802254 - AluJb SINE Alu -24 288 13 2618 134 14 0 chrY 4712072 4712430 -46801154 + THE1B LTR MaLR 1 363 -1 804 249 31 52 chrY 4712817 4713046 -46800538 - MER58A DNA MER1_type 0 224 1 2089 125 0 0 chrY 4713087 4713395 -46800189 + AluSc SINE Alu 1 308 0 2167 170 40 5 chrY 4713551 4713928 -46799656 + MLT1B LTR MaLR 1 390 0 423 0 0 0 chrY 4715038 4715085 -46798499 + (TTTA)n Simple_repeat Simple_repeat 2 48 0 1848 158 29 0 chrY 4715087 4715366 -46798218 - AluSx SINE Alu -24 288 2 1543 204 3 13 chrY 4716003 4716307 -46797277 + AluJo SINE Alu 1 301 -11 201 94 0 0 chrY 4716380 4716412 -46797172 + (TTAA)n Simple_repeat Simple_repeat 3 34 0 897 174 0 43 chrY 4716412 4716499 -46797085 - AluJo SINE Alu -28 284 203 4038 70 63 4 chrY 4716499 4717026 -46796558 + LTR6B LTR ERV1 1 558 0 897 174 0 43 chrY 4717026 4717091 -46796493 - AluJo SINE Alu -109 203 137 863 207 61 15 chrY 4717160 4717358 -46796226 + MLT1D LTR MaLR 29 235 -270 372 148 11 66 chrY 4717358 4717541 -46796043 + (CAGAGA)n Simple_repeat Simple_repeat 2 174 0 503 179 0 13 chrY 4717598 4717749 -46795835 + (CAGAGA)n Simple_repeat Simple_repeat 2 150 0 241 200 52 52 chrY 4717756 4717871 -46795713 + MLT1D LTR MaLR 180 294 -211 1133 90 26 0 chrY 4717871 4718026 -46795558 + AluY SINE Alu 136 294 -17 1004 151 39 11 chrY 4718041 4718220 -46795364 - LTR43 LTR ERV1 -388 214 31 183 204 0 0 chrY 4718875 4718924 -46794660 + C-rich Low_complexity Low_complexity 4 52 0 584 162 30 0 chrY 4718924 4719023 -46794561 - FRAM SINE Alu -5 171 70 1838 145 37 0 chrY 4719072 4719369 -46794215 + Tigger3(Golem) DNA MER2_type 2721 3028 -1 1868 209 37 0 chrY 4719384 4719734 -46793850 + MLT1A1 LTR MaLR 3 365 0 378 221 0 13 chrY 4720782 4720859 -46792725 - LTR45B LTR ERV1 -390 99 24 29 37 0 19 chrY 4721217 4721251 -46792333 + AT_rich Low_complexity Low_complexity 1 35 -18 927 150 0 0 chrY 4721251 4721384 -46792200 - AluJo SINE Alu -169 133 1 29 37 0 19 chrY 4721384 4721403 -46792181 + AT_rich Low_complexity Low_complexity 35 53 0 306 315 0 11 chrY 4721581 4721673 -46791911 - L1MC4 LINE L1 -1335 6707 6617 2183 172 36 90 chrY 4721673 4722174 -46791410 + LTR45B LTR ERV1 6 479 -10 22 0 0 0 chrY 4722791 4722813 -46790771 + AT_rich Low_complexity Low_complexity 1 22 0 280 245 19 0 chrY 4723707 4723813 -46789771 + CT-rich Low_complexity Low_complexity 1 108 0 1365 219 28 15 chrY 4724135 4724460 -46789124 + L1MC3 LINE L1 7295 7623 -162 399 163 0 0 chrY 4724461 4724541 -46789043 + (ATG)n Simple_repeat Simple_repeat 1 80 0 * 918 126 6 27 chrY 4724539 4724722 -46788862 + (ATGGTG)n Simple_repeat Simple_repeat 1 179 0 278 173 62 37 chrY 4724956 4725037 -46788547 - MLT1J LTR MaLR -358 153 71 964 202 66 141 chrY 4725351 4725777 -46787807 + MSTD LTR MaLR 1 394 -2 195 42 0 0 chrY 4727052 4727076 -46786508 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 979 175 32 5 chrY 4728041 4728230 -46785354 + L1PA16 LINE L1 5964 6157 -9 370 261 39 15 chrY 4728282 4728412 -46785172 + MLT1D LTR MaLR 6 138 -367 440 308 15 0 chrY 4728771 4728901 -46784683 + MLT1D LTR MaLR 302 433 -72 1856 162 0 14 chrY 4729057 4729353 -46784231 + AluJo SINE Alu 3 294 -18 1299 203 11 39 chrY 4729509 4729790 -46783794 + AluJo SINE Alu 1 273 -39 210 37 0 0 chrY 4729790 4729817 -46783767 + (TC)n Simple_repeat Simple_repeat 1 27 0 298 280 15 23 chrY 4730667 4730799 -46782785 + (TCTA)n Simple_repeat Simple_repeat 3 133 0 349 117 51 36 chrY 4730810 4730947 -46782637 + (TCTA)n Simple_repeat Simple_repeat 4 142 0 451 130 56 25 chrY 4730959 4731121 -46782463 + (TCTA)n Simple_repeat Simple_repeat 4 170 0 2634 129 4 75 chrY 4731934 4732017 -46781567 - Tigger2a DNA MER2_type -2275 433 346 1710 127 70 0 chrY 4732017 4732276 -46781308 + AluSq SINE Alu 22 298 -15 2634 129 4 75 chrY 4732276 4732657 -46780927 - Tigger2a DNA MER2_type -2362 346 2 225 0 0 0 chrY 4733016 4733041 -46780543 + (TG)n Simple_repeat Simple_repeat 2 26 0 668 106 43 6 chrY 4733125 4733286 -46780298 + (TAGA)n Simple_repeat Simple_repeat 1 167 0 40 49 0 0 chrY 4733887 4733948 -46779636 + AT_rich Low_complexity Low_complexity 1 61 0 1115 142 0 0 chrY 4733948 4734110 -46779474 - AluSq SINE Alu -17 296 135 28 109 0 0 chrY 4734395 4734514 -46779070 + AT_rich Low_complexity Low_complexity 1 119 0 184 86 69 17 chrY 4734522 4734580 -46779004 + (TATAA)n Simple_repeat Simple_repeat 5 65 0 22 0 0 0 chrY 4734594 4734616 -46778968 + AT_rich Low_complexity Low_complexity 1 22 0 1380 113 9 14 chrY 4734616 4734838 -46778746 - Tigger2 DNA MER2_type -146 2572 2352 335 141 86 31 chrY 4734875 4735038 -46778546 + (TA)n Simple_repeat Simple_repeat 1 172 0 382 188 28 61 chrY 4735044 4735225 -46778359 + (TTATA)n Simple_repeat Simple_repeat 5 179 0 226 207 73 24 chrY 4735251 4735333 -46778251 + HSMAR1 DNA Mariner 1 86 -1201 226 218 61 14 chrY 4735333 4735480 -46778104 + (TTATA)n Simple_repeat Simple_repeat 1 154 0 217 318 39 39 chrY 4735608 4735762 -46777822 + L2 LINE L2 2633 2786 -528 1451 159 28 0 chrY 4736207 4736459 -46777125 - L1MA4A LINE L1 0 6303 6045 3498 108 4 16 chrY 4736617 4737119 -46776465 + MER1A DNA MER1_type 34 529 0 1945 163 3 0 chrY 4737505 4737812 -46775772 - AluSx SINE Alu -4 308 1 1301 148 13 0 chrY 4738200 4738429 -46775155 - MLT1B LTR MaLR 0 390 159 1152 157 10 12 chrY 4738430 4738647 -46774937 - MLT1B LTR MaLR 0 467 175 10197 89 8 0 chrY 4738783 4740868 -46772716 - L1PA5 LINE L1 -4 6150 4041 24121 107 14 14 chrY 4740868 4744552 -46769032 - L1P LINE L1 -1678 4468 11 6836 99 2 62 chrY 4744815 4746058 -46767526 - L1PA7 LINE L1 -6 6148 4932 1350 221 78 7 chrY 4746245 4746410 -46767174 - AluJo SINE Alu 0 302 107 189 0 0 0 chrY 4746410 4746431 -46767153 + (TTTTA)n Simple_repeat Simple_repeat 2 22 0 1350 221 78 7 chrY 4746431 4746546 -46767038 - AluJo SINE Alu -195 107 2 1053 166 6 11 chrY 4747256 4747437 -46766147 + AluJo SINE Alu 1 180 -132 2624 141 9 19 chrY 4747655 4748075 -46765509 + L1PB4 LINE L1 5739 6154 -2 224 342 0 0 chrY 4748341 4748417 -46765167 - MER5A DNA MER1_type -84 105 30 281 215 11 65 chrY 4748453 4748546 -46765038 - MER3 DNA MER1_type -1 208 121 603 209 72 0 chrY 4748573 4748726 -46764858 - MER3 DNA MER1_type -44 165 2 474 270 106 86 chrY 4749268 4749675 -46763909 - MLT1J2 LTR MaLR -11 439 25 680 335 48 15 chrY 4749710 4750091 -46763493 + L1ME3A LINE L1 5497 5893 -277 2035 167 21 11 chrY 4750731 4751103 -46762481 + L1MA7 LINE L1 5841 6216 -75 1932 155 0 0 chrY 4751104 4751394 -46762190 + AluSx SINE Alu 1 290 -22 813 177 0 43 chrY 4751405 4751591 -46761993 + L1MA7 LINE L1 6114 6291 0 592 200 33 16 chrY 4751747 4751954 -46761630 - MLT2B1 LTR ERVL -95 425 269 532 238 42 8 chrY 4751932 4752107 -46761477 - MLT2B1 LTR ERVL -123 397 267 * 602 219 21 141 chrY 4752082 4752324 -46761260 - MLT2B1 LTR ERVL -130 390 178 955 51 0 0 chrY 4752339 4752457 -46761127 - L1P5 LINE L1 -471 5680 5563 619 215 25 19 chrY 4752532 4752690 -46760894 - MLT2D LTR ERVL -255 159 1 220 231 39 0 chrY 4752690 4752742 -46760842 + (CATG)n Simple_repeat Simple_repeat 2 55 0 3527 154 2 9 chrY 4754419 4754950 -46758634 - MER1A DNA MER1_type 0 527 1 664 272 85 13 chrY 4754980 4755204 -46758380 + MLT1C LTR MaLR 218 457 -10 201 74 0 0 chrY 4755204 4755231 -46758353 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 393 203 16 8 chrY 4756015 4756138 -46757446 + CT-rich Low_complexity Low_complexity 3 126 0 690 143 9 9 chrY 4756150 4756255 -46757329 - AluSq/x SINE Alu -205 107 3 606 23 34 0 chrY 4756275 4756363 -46757221 + (TA)n Simple_repeat Simple_repeat 1 91 0 187 118 0 39 chrY 4756397 4756448 -46757136 + (TAA)n Simple_repeat Simple_repeat 2 50 0 * 274 182 34 23 chrY 4756442 4756618 -46756966 + (TATAA)n Simple_repeat Simple_repeat 2 179 0 293 190 34 62 chrY 4756653 4756832 -46756752 + (TATAA)n Simple_repeat Simple_repeat 5 178 0 2063 152 3 0 chrY 4756834 4757143 -46756441 + AluSx SINE Alu 1 310 -2 1856 206 33 23 chrY 4757158 4757585 -46755999 + L1MA8 LINE L1 5836 6266 -25 1965 151 28 0 chrY 4757723 4758014 -46755570 + AluSx SINE Alu 1 299 -13 321 300 132 21 chrY 4758212 4758455 -46755129 - MER97b DNA MER1_type? -735 318 49 233 232 0 0 chrY 4758506 4758562 -46755022 + T-rich Low_complexity Low_complexity 1 56 0 189 0 0 0 chrY 4758596 4758617 -46754967 + (TA)n Simple_repeat Simple_repeat 2 22 0 21 0 0 0 chrY 4758617 4758638 -46754946 + AT_rich Low_complexity Low_complexity 1 21 0 1946 171 0 0 chrY 4758638 4758947 -46754637 + AluSx SINE Alu 1 309 -3 1621 135 0 0 chrY 4759000 4759230 -46754354 + AluSg/x SINE Alu 69 298 -14 515 157 45 0 chrY 4759230 4759319 -46754265 - L1MA5A LINE L1 -12 6285 6193 1704 166 35 7 chrY 4759588 4759872 -46753712 + AluJo SINE Alu 1 292 -20 765 179 22 22 chrY 4760128 4760262 -46753322 + AluJo SINE Alu 3 136 -176 243 0 0 0 chrY 4760915 4760942 -46752642 + (T)n Simple_repeat Simple_repeat 1 27 0 2100 177 111 2 chrY 4762806 4763219 -46750365 + L1PA16 LINE L1 5708 6165 -1 203 370 4 0 chrY 4763508 4763595 -46749989 - MIR SINE MIR -74 134 45 595 181 23 12 chrY 4763695 4763866 -46749718 + CT-rich Low_complexity Low_complexity 3 175 0 1541 215 3 14 chrY 4763887 4764175 -46749409 - AluJo SINE Alu -15 287 3 894 194 6 0 chrY 4764180 4764345 -46749239 - L1M3 LINE L1 -554 5780 5615 3393 162 91 57 chrY 4764443 4765146 -46748438 - LTR8A LTR ERV1 0 727 1 1400 177 113 78 chrY 4765178 4765613 -46747971 + LTR7 LTR ERV1 1 450 0 14898 184 78 88 chrY 4765613 4769784 -46743800 + HERVH LTR ERV1 1 4125 -3588 2438 40 40 0 chrY 4769784 4770081 -46743503 - AluY SINE Alu -2 309 1 14898 184 78 88 chrY 4770081 4770504 -46743080 + HERVH LTR ERV1 4125 4551 -3162 1458 164 19 0 chrY 4770495 4770751 -46742833 + HERVH LTR ERV1 5756 6016 -1697 * 3869 106 5 5 chrY 4770744 4771301 -46742283 + HERVH LTR ERV1 7157 7713 0 1457 171 117 61 chrY 4771301 4771727 -46741857 + LTR7 LTR ERV1 1 450 0 1756 153 0 38 chrY 4771793 4772107 -46741477 - AluJo SINE Alu 0 312 11 21 36 0 0 chrY 4772627 4772655 -46740929 + AT_rich Low_complexity Low_complexity 1 28 0 226 219 195 49 chrY 4772806 4772888 -46740696 - MIR3 SINE MIR -5 203 110 1890 166 0 3 chrY 4772940 4773242 -46740342 - AluJb SINE Alu -11 301 1 2252 141 55 66 chrY 4773755 4773836 -46739748 + MER4E LTR ERV1 1 81 -698 2021 137 17 0 chrY 4773836 4774129 -46739455 + AluSx SINE Alu 1 298 -14 2252 141 55 66 chrY 4774129 4774668 -46738916 + MER4E LTR ERV1 81 779 0 11274 113 7 5 chrY 4774811 4776486 -46737098 - L1PA7 LINE L1 -1274 4872 3195 3198 118 27 1 chrY 4776485 4777102 -46736482 + L1PA7 LINE L1 4854 5489 -665 * 1591 112 21 156 chrY 4777103 4777207 -46736377 + AluYb8 SINE Alu 1 117 -201 4001 100 0 4 chrY 4777207 4777716 -46735868 + MER9 LTR ERVK 1 507 -4 1591 112 21 156 chrY 4777716 4777951 -46735633 + AluYb8 SINE Alu 117 294 -24 5029 79 39 17 chrY 4777951 4778612 -46734972 + L1PA7 LINE L1 5476 6151 -3 261 0 0 0 chrY 4778865 4778894 -46734690 + (CAAAA)n Simple_repeat Simple_repeat 3 31 0 2145 122 3 0 chrY 4778925 4779219 -46734365 + AluY SINE Alu 1 295 -16 363 154 0 0 chrY 4780088 4780153 -46733431 - L1MD2 LINE L1 -7 6352 6288 1661 163 7 7 chrY 4780153 4780423 -46733161 + AluSq SINE Alu 38 307 -6 937 138 28 44 chrY 4780440 4780504 -46733080 - L1MD1 LINE L1 -55 6187 6123 4568 120 16 2 chrY 4780504 4781130 -46732454 - MER41B LTR ERV1 0 635 1 937 138 28 44 chrY 4781130 4781246 -46732338 - L1MD1 LINE L1 -119 6123 6010 1297 225 77 20 chrY 4781390 4781430 -46732154 - MLT1A1 LTR MaLR 0 365 329 2281 147 30 22 chrY 4781430 4781791 -46731793 + THE1B LTR MaLR 1 364 0 1297 225 77 20 chrY 4781791 4782048 -46731536 - MLT1A1 LTR MaLR -36 329 51 2176 160 47 32 chrY 4782048 4782585 -46730999 - MLT2A2 LTR ERVL 0 554 1 302 185 62 15 chrY 4782585 4782641 -46730943 - MLT1A1 LTR MaLR -306 59 1 449 238 38 0 chrY 4783804 4783909 -46729675 - L1MA4A LINE L1 -259 6044 5936 743 151 0 24 chrY 4783911 4784062 -46729522 - AluJb SINE Alu 0 337 190 626 179 104 8 chrY 4784122 4784206 -46729378 + L1MA4A LINE L1 6084 6187 -116 1785 157 22 29 chrY 4784206 4784519 -46729065 + AluJo SINE Alu 1 311 -1 626 179 104 8 chrY 4784519 4784568 -46729016 + L1MA4A LINE L1 6187 6230 -73 1049 245 0 12 chrY 4784896 4785149 -46728435 + L1MA8 LINE L1 6042 6291 0 293 297 13 0 chrY 4785205 4785509 -46728075 + (TA)n Simple_repeat Simple_repeat 1 308 0 260 268 0 7 chrY 4785528 4785666 -46727918 + (TA)n Simple_repeat Simple_repeat 2 138 0 257 347 0 0 chrY 4785677 4785775 -46727809 + (TA)n Simple_repeat Simple_repeat 2 99 0 270 43 0 130 chrY 4786419 4786432 -46727152 + L1P4 LINE L1 5729 5742 -432 2038 157 13 46 chrY 4786432 4786618 -46726966 + THE1C LTR MaLR 1 169 -206 1916 142 3 3 chrY 4786618 4786913 -46726671 + AluSq SINE Alu 1 295 -18 2038 157 13 46 chrY 4786913 4787114 -46726470 + THE1C LTR MaLR 169 375 0 270 43 0 130 chrY 4787114 4787146 -46726438 + L1P4 LINE L1 5742 5768 -406 2119 112 78 6 chrY 4787148 4787470 -46726114 + L1PA13 LINE L1 5819 6163 0 894 100 0 0 chrY 4787587 4787707 -46725877 - AluSg/x SINE Alu -3 306 187 1384 176 4 12 chrY 4788254 4788498 -46725086 + AluJb SINE Alu 68 309 -3 26 30 0 0 chrY 4788552 4788585 -46724999 + AT_rich Low_complexity Low_complexity 1 33 0 375 23 0 0 chrY 4788736 4788780 -46724804 + (TG)n Simple_repeat Simple_repeat 1 44 0 1803 158 54 6 chrY 4788862 4789197 -46724387 + MLT1A1 LTR MaLR 15 365 0 12382 32 1 1 chrY 4789348 4790825 -46722759 - L1PA3 LINE L1 -1845 4301 2825 3826 32 7 0 chrY 4790822 4791285 -46722299 + L1PA3 LINE L1 4317 4782 -1364 * 6080 22 5 1 chrY 4791285 4791955 -46721629 + L1PA3 LINE L1 5483 6155 0 198 0 0 0 chrY 4793116 4793138 -46720446 + (CAAA)n Simple_repeat Simple_repeat 2 23 0 707 100 158 0 chrY 4794606 4794726 -46718858 - MER85 DNA T2_type 0 139 1 1373 183 0 0 chrY 4795068 4795319 -46718265 - L1MA4 LINE L1 -11 6289 6039 751 260 39 0 chrY 4795639 4795820 -46717764 + L1MB5 LINE L1 5950 6137 -37 2015 206 24 81 chrY 4795826 4796321 -46717263 + MLT1C LTR MaLR 1 467 0 667 285 80 75 chrY 4796385 4796837 -46716747 - L2 LINE L2 -889 2425 1972 327 25 0 0 chrY 4797105 4797145 -46716439 + (GA)n Simple_repeat Simple_repeat 1 40 0 764 240 29 0 chrY 4797171 4797342 -46716242 - MSTD LTR MaLR -218 178 3 2239 87 22 26 chrY 4797516 4797828 -46715756 - AluY SINE Alu 0 311 1 1720 204 38 0 chrY 4798477 4798796 -46714788 - MER2 DNA MER2_type -14 331 1 200 267 13 53 chrY 4799155 4799230 -46714354 - MIR SINE MIR -115 147 76 1463 302 93 24 chrY 4799324 4799874 -46713710 - MLT1E LTR MaLR -2 591 4 221 0 0 33 chrY 4799907 4799937 -46713647 + (CAAAAA)n Simple_repeat Simple_repeat 2 30 0 832 200 38 5 chrY 4800736 4800921 -46712663 - MER20 DNA MER1_type -26 193 3 369 110 71 24 chrY 4800927 4801054 -46712530 + (TAGA)n Simple_repeat Simple_repeat 2 134 0 493 126 58 27 chrY 4801071 4801437 -46712147 + (TAGA)n Simple_repeat Simple_repeat 1 377 0 497 107 40 27 chrY 4801459 4801608 -46711976 + (TAGA)n Simple_repeat Simple_repeat 1 151 0 894 174 67 0 chrY 4801625 4801803 -46711781 - MER20 DNA MER1_type 0 219 30 1254 214 80 48 chrY 4802422 4802773 -46710811 + MLT1A1 LTR MaLR 1 362 -3 3291 209 20 50 chrY 4802986 4803558 -46710026 + L1MA9 LINE L1 5459 5999 -313 3303 152 17 26 chrY 4803558 4804090 -46709494 - MER1A DNA MER1_type 0 527 1 3291 209 20 50 chrY 4804090 4804365 -46709219 + L1MA9 LINE L1 5999 6281 -31 439 223 58 19 chrY 4804519 4804622 -46708962 + L2 LINE L2 3152 3258 -14 1418 270 15 28 chrY 4805413 4805805 -46707779 + L1MB5 LINE L1 5748 6117 -66 1878 168 0 0 chrY 4805805 4806090 -46707494 - AluSx SINE Alu -21 291 7 1418 270 15 28 chrY 4806090 4806155 -46707429 + L1MB5 LINE L1 6117 6181 -2 2227 109 3 0 chrY 4806166 4806468 -46707116 + AluY SINE Alu 1 303 -8 976 178 11 83 chrY 4806788 4807052 -46706532 - MER66A LTR ERV1 -2 476 232 791 211 206 10 chrY 4807169 4807368 -46706216 - MER66B LTR ERV1 -240 246 9 2045 113 0 10 chrY 4807691 4807982 -46705602 - MER1A DNA MER1_type 0 529 242 237 208 0 0 chrY 4808098 4808151 -46705433 - LTR66 LTR ERVL -164 446 394 233 132 38 19 chrY 4808151 4808204 -46705380 + (TA)n Simple_repeat Simple_repeat 2 55 0 1565 185 0 0 chrY 4809449 4809730 -46703854 - L1 LINE L1 -1136 5010 4730 253 267 27 27 chrY 4809806 4809881 -46703703 - L2 LINE L2 0 3272 3198 2524 27 40 0 chrY 4810556 4810852 -46702732 + AluY SINE Alu 1 308 -3 714 98 40 29 chrY 4812046 4812219 -46701365 + (TAGA)n Simple_repeat Simple_repeat 3 177 0 853 223 30 128 chrY 4812759 4813076 -46700508 - MLT1A2 LTR MaLR -5 370 24 2855 106 3 3 chrY 4813076 4813436 -46700148 - THE1B LTR MaLR -1 363 4 853 223 30 128 chrY 4813436 4813461 -46700123 - MLT1A2 LTR MaLR -351 24 94 2120 144 101 29 chrY 4813461 4813837 -46699747 + MER57A LTR ERV1 1 403 0 853 223 30 128 chrY 4813837 4813919 -46699665 - MLT1A2 LTR MaLR -280 95 7 186 103 0 0 chrY 4814025 4814054 -46699530 + (A)n Simple_repeat Simple_repeat 1 29 0 225 94 0 0 chrY 4814096 4814128 -46699456 + (T)n Simple_repeat Simple_repeat 1 32 0 2430 74 20 0 chrY 4814346 4814643 -46698941 + AluY SINE Alu 1 303 -8 438 75 0 0 chrY 4815229 4815282 -46698302 - Alu SINE Alu -260 53 1 469 251 2 8 chrY 4815282 4815414 -46698170 - L1M4 LINE L1 -1074 5072 4941 481 288 24 0 chrY 4815573 4815743 -46697841 + (TATG)n Simple_repeat Simple_repeat 1 174 0 411 366 6 0 chrY 4815693 4815868 -46697716 + (TG)n Simple_repeat Simple_repeat 1 176 0 * 248 244 12 35 chrY 4815886 4816058 -46697526 + (TATG)n Simple_repeat Simple_repeat 4 171 0 423 305 0 13 chrY 4816070 4816224 -46697360 + (TATG)n Simple_repeat Simple_repeat 4 155 0 2483 135 17 11 chrY 4816922 4817284 -46696300 + THE1B LTR MaLR 1 364 0 200 108 0 27 chrY 4818433 4818470 -46695114 + (CAAAA)n Simple_repeat Simple_repeat 2 37 0 728 198 37 119 chrY 4818519 4818688 -46694896 - MLT2B2 LTR ERVL 0 515 370 1962 162 35 54 chrY 4818688 4819058 -46694526 + THE1B LTR MaLR 2 364 0 728 198 37 119 chrY 4819058 4819131 -46694453 - MLT2B2 LTR ERVL -145 370 293 7936 171 12 34 chrY 4819308 4820579 -46693005 + L1P3 LINE L1 2 1253 -5208 210 91 0 0 chrY 4820579 4820612 -46692972 + (CAA)n Simple_repeat Simple_repeat 1 33 0 7936 171 12 34 chrY 4820612 4821739 -46691845 + L1P3 LINE L1 1253 2403 -4058 334 157 0 0 chrY 4821747 4821798 -46691786 - L1MA8 LINE L1 -423 5868 5818 247 83 28 0 chrY 4821820 4821856 -46691728 - MER75 DNA T2_type -4 500 464 587 140 40 0 chrY 4821887 4821987 -46691597 - L1MA8 LINE L1 -496 5816 5713 311 315 18 0 chrY 4821989 4822100 -46691484 - MER5A DNA MER1_type -74 115 3 481 333 0 0 chrY 4822631 4822811 -46690773 + (CA)n Simple_repeat Simple_repeat 1 180 0 360 304 0 4 chrY 4822834 4823315 -46690269 + (CA)n Simple_repeat Simple_repeat 1 478 0 315 274 0 0 chrY 4823365 4823540 -46690044 + (CA)n Simple_repeat Simple_repeat 2 176 0 183 262 0 0 chrY 4823591 4823698 -46689886 + (CA)n Simple_repeat Simple_repeat 2 108 0 236 270 7 0 chrY 4823721 4823858 -46689726 + (CA)n Simple_repeat Simple_repeat 2 139 0 242 269 0 8 chrY 4823886 4824016 -46689568 + (CA)n Simple_repeat Simple_repeat 1 129 0 271 316 7 22 chrY 4824029 4824165 -46689419 + (CATATA)n Simple_repeat Simple_repeat 1 134 0 * 360 295 17 17 chrY 4824068 4824241 -46689343 + (CATA)n Simple_repeat Simple_repeat 4 176 0 222 232 27 0 chrY 4824258 4824370 -46689214 + (CA)n Simple_repeat Simple_repeat 2 116 0 4276 76 26 36 chrY 4826913 4827518 -46686066 + L1PB1 LINE L1 5550 6148 -3 845 182 123 13 chrY 4827977 4828131 -46685453 + AluJo SINE Alu 2 172 -140 1685 111 4 25 chrY 4828133 4828368 -46685216 - AluSq SINE Alu -83 230 1 351 0 0 0 chrY 4828792 4828831 -46684753 + (TG)n Simple_repeat Simple_repeat 1 39 0 2285 193 3 0 chrY 4828887 4829276 -46684308 - MLT1B LTR MaLR 0 390 1 5271 163 8 6 chrY 4829848 4830826 -46682758 + L1PA16 LINE L1 5170 6150 -16 2304 136 5 19 chrY 4831265 4831634 -46681950 - THE1B LTR MaLR 0 364 1 26 50 0 0 chrY 4831941 4831981 -46681603 + AT_rich Low_complexity Low_complexity 1 40 0 3595 121 8 25 chrY 4832445 4832517 -46681067 + L1PA14 LINE L1 5535 5607 -554 1752 171 0 17 chrY 4832517 4832845 -46680739 + AluSx SINE Alu 1 323 0 3595 121 8 25 chrY 4832845 4833377 -46680207 + L1PA14 LINE L1 5607 6130 -31 6205 90 9 0 chrY 4833383 4834250 -46679334 + L1PA6 LINE L1 5280 6154 0 204 270 157 78 chrY 4834350 4834554 -46679030 - MIR SINE MIR -10 252 33 195 42 0 0 chrY 4834595 4834619 -46678965 + (TTTA)n Simple_repeat Simple_repeat 2 25 0 39144 47 23 1 chrY 4834645 4840662 -46672922 - L1PA3 LINE L1 -4 6151 1 1365 232 10 7 chrY 4840682 4840971 -46672613 - AluJb SINE Alu -22 290 1 559 188 72 68 chrY 4841354 4841561 -46672023 + MER3 DNA MER1_type 1 208 -1 2150 176 38 24 chrY 4841713 4842138 -46671446 + Tigger2a DNA MER2_type 1 431 -3 219 376 47 0 chrY 4842301 4842386 -46671198 + L2 LINE L2 3167 3255 -17 1003 120 0 22 chrY 4842403 4842586 -46670998 + (GGAA)n Simple_repeat Simple_repeat 2 180 0 743 261 31 0 chrY 4842637 4842832 -46670752 + MLT2B1 LTR ERVL 1 201 -319 1429 104 0 0 chrY 4842837 4843048 -46670536 - L1P3 LINE L1 -4839 1622 1412 2245 282 42 55 chrY 4843613 4844746 -46668838 + L1M3de LINE L1 286 2051 -4602 1843 152 6 22 chrY 4844783 4845099 -46668485 + AluSx SINE Alu 1 311 -1 1406 270 97 70 chrY 4845140 4845941 -46667643 + L1M2b LINE L1 15 837 -6372 805 259 13 76 chrY 4845913 4846307 -46667277 + L1M2b LINE L1 1564 1932 -5277 * 338 318 148 47 chrY 4846320 4846704 -46666880 - L1MEc LINE L1 -5918 478 56 1322 178 73 11 chrY 4847138 4847413 -46666171 - AluSg SINE Alu -17 293 2 319 56 37 0 chrY 4847415 4847469 -46666115 + (TAAAAA)n Simple_repeat Simple_repeat 2 57 0 2121 89 19 29 chrY 4847472 4847786 -46665798 + AluY SINE Alu 1 311 0 2463 65 7 0 chrY 4847818 4848150 -46665434 - AluY SINE Alu 0 334 1 1410 270 87 11 chrY 4848378 4849000 -46664584 - LTR65 LTR ERV1 0 669 1 1329 228 7 17 chrY 4849586 4849880 -46663704 + AluSx SINE Alu 1 291 -21 22 35 0 0 chrY 4849880 4849909 -46663675 + AT_rich Low_complexity Low_complexity 1 29 0 805 207 0 30 chrY 4849941 4850110 -46663474 - FRAM SINE Alu -6 170 7 288 0 0 0 chrY 4850114 4850146 -46663438 + (TG)n Simple_repeat Simple_repeat 2 33 0 316 334 59 59 chrY 4850200 4850556 -46663028 - HAL1b LINE L1 -689 659 304 334 268 12 0 chrY 4850718 4850800 -46662784 + L2 LINE L2 3231 3313 0 2217 108 0 25 chrY 4853146 4853462 -46660122 + AluY SINE Alu 1 308 -3 185 348 51 44 chrY 4854043 4854201 -46659383 + MIR SINE MIR 48 206 -56 398 321 0 0 chrY 4854280 4854420 -46659164 - MIR SINE MIR -25 237 98 1032 254 13 30 chrY 4855313 4855612 -46657972 - MLT1E LTR MaLR -2 591 298 1459 221 3 24 chrY 4855787 4856081 -46657503 + AluJo SINE Alu 1 288 -24 243 326 68 14 chrY 4856103 4856250 -46657334 - L2 LINE L2 -2521 793 639 347 359 33 22 chrY 4856304 4856488 -46657096 - L2 LINE L2 -2835 479 294 341 141 49 82 chrY 4856704 4856888 -46656696 + (TATATG)n Simple_repeat Simple_repeat 2 179 0 366 153 38 77 chrY 4856905 4857088 -46656496 + (TATATG)n Simple_repeat Simple_repeat 2 177 0 366 153 38 77 chrY 4857105 4857288 -46656296 + (TATATG)n Simple_repeat Simple_repeat 2 177 0 405 172 39 61 chrY 4857305 4857485 -46656099 + (TATATG)n Simple_repeat Simple_repeat 2 177 0 575 294 34 21 chrY 4857496 4857734 -46655850 - MLT1E LTR MaLR -192 275 35 207 0 0 0 chrY 4857735 4857758 -46655826 + (T)n Simple_repeat Simple_repeat 1 23 0 2119 99 0 3 chrY 4858493 4858797 -46654787 - AluY SINE Alu -8 303 1 27 29 0 0 chrY 4858983 4859017 -46654567 + AT_rich Low_complexity Low_complexity 1 34 0 233 225 28 70 chrY 4859547 4859618 -46653966 + MIR3 SINE MIR 103 170 -38 2080 103 6 44 chrY 4859727 4860047 -46653537 + AluY SINE Alu 3 310 -1 25 0 0 0 chrY 4860365 4860390 -46653194 + AT_rich Low_complexity Low_complexity 1 25 0 22 35 0 0 chrY 4860602 4860631 -46652953 + AT_rich Low_complexity Low_complexity 1 29 0 1280 183 17 101 chrY 4861220 4861625 -46651959 + MLT1B LTR MaLR 1 371 -19 263 360 30 0 chrY 4862414 4862514 -46651070 + MIR SINE MIR 30 132 -130 439 273 30 8 chrY 4862677 4862809 -46650775 - MIR3 SINE MIR -8 200 66 1852 156 17 3 chrY 4863860 4864162 -46649422 - AluSp SINE Alu -7 306 1 313 353 90 64 chrY 4864548 4865015 -46648569 + L2 LINE L2 2831 3309 -4 1269 153 9 0 chrY 4865123 4865339 -46648245 - LTR19B LTR ERV1 0 580 363 3056 113 17 4 chrY 4865346 4865826 -46647758 - LTR15 LTR ERV1 -7 486 1 1952 147 34 0 chrY 4865826 4866180 -46647404 - LTR19B LTR ERV1 -214 366 1 1258 147 4 31 chrY 4866181 4866406 -46647178 - LTR19B-int LTR ERV1 -1 5585 5367 * 1420 186 66 77 chrY 4866402 4866643 -46646941 - LTR19B-int LTR ERV1 -332 5254 5012 464 48 0 0 chrY 4866643 4866706 -46646878 + AluY SINE Alu 243 305 -5 1420 186 66 77 chrY 4866706 4866945 -46646639 - LTR19B-int LTR ERV1 -574 5012 4718 * 5057 210 37 1 chrY 4866940 4868186 -46645398 - LTR19B-int LTR ERV1 -422 5507 3336 455 242 46 36 chrY 4868215 4868434 -46645150 - LTR19B-int LTR ERV1 -3091 2126 1906 1127 109 0 0 chrY 4868436 4868592 -46644992 + AluY SINE Alu 146 301 -10 4545 148 29 18 chrY 4869022 4869847 -46643737 - LTR19B-int LTR ERV1 -3624 1962 1129 3981 163 8 34 chrY 4869833 4870712 -46642872 - LTR19B-int LTR ERV1 -6786 933 1 * 1644 137 14 11 chrY 4870712 4870996 -46642588 - LTR19B LTR ERV1 0 580 296 2220 99 12 0 chrY 4870997 4871341 -46642243 - THE1-int LTR MaLR -1232 348 1 39 68 0 0 chrY 4871644 4871718 -46641866 + AT_rich Low_complexity Low_complexity 1 74 0 677 311 33 36 chrY 4872049 4872354 -46641230 - MLT1J LTR MaLR -105 406 103 2045 140 0 0 chrY 4874002 4874295 -46639289 + AluSp SINE Alu 1 293 -20 382 250 29 0 chrY 4875771 4875907 -46637677 - L1M4 LINE L1 -1539 4607 4468 10137 130 28 6 chrY 4876499 4879007 -46634577 - L1PA7 LINE L1 -8 6146 3596 1818 186 0 3 chrY 4879007 4879319 -46634265 - AluSx SINE Alu -1 311 1 1057 106 0 0 chrY 4879500 4879642 -46633942 + AluY SINE Alu 163 304 -7 1239 166 16 93 chrY 4879743 4880056 -46633528 + MER52C LTR ERV1 990 1278 0 36 53 0 0 chrY 4880223 4880280 -46633304 + AT_rich Low_complexity Low_complexity 1 57 0 214 331 91 0 chrY 4880879 4881000 -46632584 - MIR SINE MIR -78 184 53 207 0 0 0 chrY 4881237 4881260 -46632324 + (T)n Simple_repeat Simple_repeat 1 23 0 417 321 95 34 chrY 4881399 4881695 -46631889 + L2 LINE L2 2418 2731 -583 578 232 7 21 chrY 4881954 4882096 -46631488 - MLT1D LTR MaLR -65 440 301 299 234 0 27 chrY 4882212 4882323 -46631261 - L1ME LINE L1 -5282 788 681 2906 187 25 3 chrY 4882721 4883289 -46630295 - LTR22 LTR ERVK 0 580 1 7525 184 9 6 chrY 4883290 4885251 -46628333 - HERVK22 LTR ERVK -2 6835 4770 4168 127 15 128 chrY 4885251 4886178 -46627406 - LTR12 LTR ERV1 0 826 5 2487 182 15 26 chrY 4886193 4886804 -46626780 - pTR5 LTR ERV1 -1093 1345 742 * 12188 166 2 15 chrY 4886803 4889358 -46624226 - HERVK22 LTR ERVK -2064 4773 2267 1796 183 30 158 chrY 4889358 4889998 -46623586 + LTR6A LTR ERV1 1 564 0 12840 163 3 7 chrY 4889998 4892233 -46621351 - HERVK22 LTR ERVK -4566 2271 46 3048 109 15 0 chrY 4892233 4893046 -46620538 - L1P2 LINE L1 -420 5734 4909 2878 155 29 39 chrY 4893643 4894205 -46619379 - LTR6A LTR ERV1 0 564 9 195 42 0 0 chrY 4894774 4894798 -46618786 + (TAAAA)n Simple_repeat Simple_repeat 2 25 0 2622 150 62 6 chrY 4896223 4896690 -46616894 - MER1A DNA MER1_type -6 523 31 2015 59 0 0 chrY 4897114 4897370 -46616214 + L1PA4 LINE L1 5899 6154 -1 22 56 0 0 chrY 4897582 4897618 -46615966 + AT_rich Low_complexity Low_complexity 1 36 0 465 204 0 0 chrY 4898305 4898437 -46615147 + CT-rich Low_complexity Low_complexity 1 132 0 207 364 8 8 chrY 4898851 4898972 -46614612 + (TTG)n Simple_repeat Simple_repeat 2 122 0 369 0 0 0 chrY 4899832 4899873 -46613711 + (CA)n Simple_repeat Simple_repeat 2 42 0 45 75 0 0 chrY 4899884 4899978 -46613606 + AT_rich Low_complexity Low_complexity 1 94 0 22 35 0 0 chrY 4900217 4900246 -46613338 + AT_rich Low_complexity Low_complexity 1 29 0 23 0 0 0 chrY 4900331 4900354 -46613230 + AT_rich Low_complexity Low_complexity 1 23 0 1572 197 11 3 chrY 4900354 4900638 -46612946 - AluSx SINE Alu -25 287 2 21 36 0 0 chrY 4900864 4900892 -46612692 + AT_rich Low_complexity Low_complexity 1 28 0 2000 137 13 3 chrY 4901279 4901578 -46612006 + AluY SINE Alu 10 311 0 543 69 0 0 chrY 4904330 4904402 -46609182 + (TTCC)n Simple_repeat Simple_repeat 3 74 0 369 180 0 22 chrY 4905710 4905799 -46607785 + L1MA9 LINE L1 6079 6165 -147 25 0 0 0 chrY 4905962 4905987 -46607597 + AT_rich Low_complexity Low_complexity 1 25 0 898 77 8 0 chrY 4906629 4906746 -46606838 + AluSc SINE Alu 1 118 -191 213 39 0 0 chrY 4908027 4908053 -46605531 + (TTG)n Simple_repeat Simple_repeat 2 27 0 213 311 27 27 chrY 4908148 4908222 -46605362 - MER5A DNA MER1_type -73 116 43 299 308 16 16 chrY 4908646 4908828 -46604756 + L1M4 LINE L1 5336 5517 -657 29 0 0 0 chrY 4908946 4908975 -46604609 + AT_rich Low_complexity Low_complexity 1 29 0 27 29 0 0 chrY 4909096 4909130 -46604454 + AT_rich Low_complexity Low_complexity 1 34 0 27 29 0 0 chrY 4909211 4909245 -46604339 + AT_rich Low_complexity Low_complexity 1 34 0 201 74 0 0 chrY 4910147 4910174 -46603410 + (A)n Simple_repeat Simple_repeat 1 27 0 32 0 0 0 chrY 4910881 4910913 -46602671 + AT_rich Low_complexity Low_complexity 1 32 0 3405 181 42 20 chrY 4911417 4912208 -46601376 + L1PA16 LINE L1 5357 6164 -2 36 62 0 0 chrY 4912208 4912272 -46601312 + AT_rich Low_complexity Low_complexity 1 64 0 21 0 0 0 chrY 4913211 4913232 -46600352 + AT_rich Low_complexity Low_complexity 1 21 0 602 227 0 0 chrY 4914346 4914465 -46599119 + MER41E LTR ERV1 1 119 -393 2201 178 46 75 chrY 4914857 4915590 -46597994 - LTR1 LTR ERV1 -104 684 1 859 226 139 32 chrY 4916790 4917042 -46596542 - AluJo SINE Alu -23 289 11 22 56 0 0 chrY 4918779 4918815 -46594769 + AT_rich Low_complexity Low_complexity 1 36 0 23 0 0 0 chrY 4918971 4918994 -46594590 + AT_rich Low_complexity Low_complexity 1 23 0 23 0 0 0 chrY 4919716 4919739 -46593845 + AT_rich Low_complexity Low_complexity 1 23 0 2260 83 13 0 chrY 4920500 4920813 -46592771 - L1PA6 LINE L1 -1 6153 5837 726 70 10 0 chrY 4920813 4920913 -46592671 + L1P2 LINE L1 5432 5532 -622 2235 102 0 7 chrY 4925445 4925740 -46587844 - AluY SINE Alu -16 295 3 239 294 56 24 chrY 4926389 4926515 -46587069 + MLT1F LTR MaLR 386 515 -27 1296 238 3 0 chrY 4926978 4927280 -46586304 + AluSx SINE Alu 1 303 -9 1342 206 0 59 chrY 4927328 4927634 -46585950 + AluSx SINE Alu 1 288 -14 250 276 31 10 chrY 4927641 4927739 -46585845 + GA-rich Low_complexity Low_complexity 3 102 0 414 69 0 0 chrY 4927741 4927799 -46585785 + (GGAA)n Simple_repeat Simple_repeat 1 58 0 513 0 0 0 chrY 4928257 4928314 -46585270 + (TA)n Simple_repeat Simple_repeat 1 57 0 400 229 7 118 chrY 4928482 4928626 -46584958 - FLAM_C SINE Alu -5 128 1 262 289 13 0 chrY 4928768 4928844 -46584740 + MLT1E LTR MaLR 385 461 -132 201 74 0 0 chrY 4928902 4928929 -46584655 + (TG)n Simple_repeat Simple_repeat 2 28 0 246 163 20 0 chrY 4928944 4928993 -46584591 + L1MC/D LINE L1 5760 5809 -1999 568 363 55 14 chrY 4929941 4930362 -46583222 - L1M3b LINE L1 -5771 510 73 321 47 0 0 chrY 4930363 4930406 -46583178 + (T)n Simple_repeat Simple_repeat 1 43 0 1679 169 0 49 chrY 4930498 4930806 -46582778 + AluSg SINE Alu 1 293 -17 227 303 18 37 chrY 4930891 4931000 -46582584 - L1M3de LINE L1 -5898 755 649 1399 219 35 56 chrY 4931007 4931437 -46582147 - MSTB LTR MaLR -5 421 1 2682 7 0 0 chrY 4931763 4932051 -46581533 + AluYa5 SINE Alu 22 309 -2 2760 10 0 0 chrY 4932051 4932346 -46581238 + AluYa5 SINE Alu 15 309 -2 2049 147 0 7 chrY 4932351 4932657 -46580927 + AluSx SINE Alu 1 304 -8 265 366 21 24 chrY 4932686 4932941 -46580643 - L1M3de LINE L1 -5217 1436 605 608 255 34 39 chrY 4933286 4933458 -46580126 + L1MA4 LINE L1 5999 6171 -129 1242 223 3 42 chrY 4933458 4933768 -46579816 + AluJo SINE Alu 2 299 -13 608 255 34 39 chrY 4933768 4933803 -46579781 + L1MA4 LINE L1 6171 6205 -95 1443 222 3 14 chrY 4933834 4934122 -46579462 - AluSx SINE Alu -25 287 3 1511 196 28 3 chrY 4934604 4934889 -46578695 + AluSg SINE Alu 1 292 -18 327 233 53 15 chrY 4936836 4936969 -46576615 + L1M4 LINE L1 5308 5445 -733 1435 161 9 52 chrY 4936969 4937404 -46576180 + pTR5 LTR ERV1 743 1211 -1227 260 279 0 0 chrY 4937404 4937483 -46576101 + C-rich Low_complexity Low_complexity 1 79 0 314 43 43 0 chrY 4937484 4937531 -46576053 + pTR5 LTR ERV1 224 272 -2166 1330 153 18 0 chrY 4937531 4937759 -46575825 + AluSc SINE Alu 61 292 -17 1832 148 13 10 chrY 4938256 4938554 -46575030 - AluSc SINE Alu -10 299 1 258 255 32 0 chrY 4939824 4939918 -46573666 + (TA)n Simple_repeat Simple_repeat 2 98 0 821 237 0 25 chrY 4940445 4940681 -46572903 - AluJb SINE Alu -81 231 2 316 159 0 72 chrY 4940831 4940900 -46572684 + MER1B DNA MER1_type 213 276 -63 339 193 0 60 chrY 4941029 4941112 -46572472 + MER1B DNA MER1_type 243 320 -13 470 242 0 0 chrY 4941133 4941232 -46572352 - AluJ/FLAM SINE Alu -211 101 3 2831 243 61 48 chrY 4945769 4947507 -46566077 + L1MA8 LINE L1 4541 6291 0 31 0 0 0 chrY 4947640 4947671 -46565913 + AT_rich Low_complexity Low_complexity 1 31 0 916 224 27 54 chrY 4947818 4948112 -46565472 + AluJb SINE Alu 13 298 -14 229 294 44 38 chrY 4948159 4948319 -46565265 + L1M4c LINE L1 1203 1363 -5021 249 271 24 24 chrY 4949063 4949148 -46564436 + GA-rich Low_complexity Low_complexity 3 87 0 258 250 13 0 chrY 4949242 4949318 -46564266 + (CAGAGA)n Simple_repeat Simple_repeat 4 80 0 405 0 0 0 chrY 4950767 4950812 -46562772 + (CA)n Simple_repeat Simple_repeat 2 46 0 215 290 0 0 chrY 4953301 4953394 -46560190 + CT-rich Low_complexity Low_complexity 1 93 0 1542 220 0 0 chrY 4957925 4958264 -46555320 - AluSx SINE Alu 0 339 1 2080 135 3 0 chrY 4960007 4960296 -46553288 - AluSx SINE Alu -22 290 1 1174 254 7 0 chrY 4960300 4960579 -46553005 - AluJo SINE Alu -22 290 10 25 51 0 0 chrY 4962774 4962813 -46550771 + AT_rich Low_complexity Low_complexity 1 39 0 210 344 0 0 chrY 4963124 4963188 -46550396 + CT-rich Low_complexity Low_complexity 6 69 0 225 0 0 0 chrY 4963734 4963759 -46549825 + (T)n Simple_repeat Simple_repeat 1 25 0 2079 76 32 44 chrY 4963797 4964112 -46549472 + AluY SINE Alu 1 311 0 844 221 106 14 chrY 4964664 4964872 -46548712 + AluJb SINE Alu 56 282 -30 255 79 0 0 chrY 4964897 4964935 -46548649 + (CA)n Simple_repeat Simple_repeat 1 38 0 191 122 0 24 chrY 4965464 4965505 -46548079 + (TA)n Simple_repeat Simple_repeat 2 41 0 827 231 27 27 chrY 4967654 4967840 -46545744 - MER5A DNA MER1_type -2 187 2 2003 134 3 37 chrY 4968832 4969153 -46544431 + AluSx SINE Alu 1 310 -2 41635 64 3 14 chrY 4969173 4975289 -46538295 - L1PA4 LINE L1 -109 6046 2 5453 158 19 16 chrY 4975359 4976326 -46537258 + LTR5 LTR ERVK 1 969 0 447 309 0 0 chrY 4976498 4976621 -46536963 + MIR SINE MIR 83 205 -57 2007 151 3 3 chrY 4977805 4978117 -46535467 + AluSx SINE Alu 1 312 0 183 235 185 0 chrY 4978307 4978388 -46535196 + MIR3 SINE MIR 110 205 -3 1508 197 24 102 chrY 4978407 4978828 -46534756 + MLT1B LTR MaLR 3 390 0 1464 197 31 3 chrY 4979271 4979561 -46534023 - AluJo SINE Alu -9 303 6 615 302 123 28 chrY 4979571 4980140 -46533444 + L1ME4a LINE L1 5445 6067 -54 275 257 86 53 chrY 4980227 4980379 -46533205 + L3 LINE CR1 1304 1460 -117 317 264 227 40 chrY 4980413 4980792 -46532792 - L2 LINE L2 -17 3296 2847 374 258 118 42 chrY 4980843 4981139 -46532445 + MLT1H LTR MaLR 138 536 -13 325 242 61 30 chrY 4983740 4983839 -46529745 - L2 LINE L2 -11 3261 3160 232 250 40 13 chrY 4984124 4984200 -46529384 + L1ME3A LINE L1 5922 5999 -171 699 240 89 13 chrY 4984270 4984495 -46529089 + L1ME3A LINE L1 5920 6161 -9 1077 191 0 28 chrY 4984521 4984736 -46528848 - MER3 DNA MER1_type 0 209 1 256 250 8 100 chrY 4987150 4987270 -46526314 + MER113 DNA MER1_type? 99 207 -314 699 266 48 24 chrY 4987854 4988106 -46525478 - LTR16C LTR ERVL -8 483 226 312 295 21 11 chrY 4991144 4991239 -46522345 + MIR SINE MIR 127 222 -40 298 242 137 40 chrY 4991931 4992055 -46521529 - MIR SINE MIR -21 241 106 233 252 118 50 chrY 4992960 4993079 -46520505 + MIR SINE MIR 16 142 -66 243 23 68 0 chrY 4994053 4994097 -46519487 + T-rich Low_complexity Low_complexity 2 48 0 468 280 119 45 chrY 4995163 4995406 -46518178 - MIR SINE MIR 0 262 2 298 354 78 10 chrY 4995976 4996168 -46517416 + MIR SINE MIR 6 210 -52 1093 175 16 0 chrY 4996428 4996611 -46516973 + MER5A DNA MER1_type 1 186 -3 488 248 88 0 chrY 4996620 4996733 -46516851 + L2 LINE L2 3191 3313 0 190 211 53 0 chrY 4996758 4996796 -46516788 + L2 LINE L2 3180 3219 -94 239 320 8 86 chrY 4997474 4997602 -46515982 - L2 LINE L2 -258 3014 2897 457 239 18 0 chrY 4997987 4998096 -46515488 - L1ME LINE L1 -454 5667 5557 205 299 72 31 chrY 4998374 4998471 -46515113 + L2 LINE L2 2178 2278 -1036 25 51 0 0 chrY 4998870 4998909 -46514675 + AT_rich Low_complexity Low_complexity 1 39 0 39 0 0 0 chrY 4998958 4998997 -46514587 + AT_rich Low_complexity Low_complexity 1 39 0 2219 143 74 20 chrY 4999339 4999731 -46513853 + MLT2C2 LTR ERVL 8 420 -44 993 144 144 6 chrY 5000125 5000305 -46513279 - MER3 DNA MER1_type 0 209 5 319 321 20 2 chrY 5000863 5000988 -46512596 + MIR SINE MIR 30 154 -62 316 320 48 0 chrY 5000991 5001094 -46512490 - L2 LINE L2 0 3313 3206 243 302 42 98 chrY 5001835 5002050 -46511534 - MLT1K LTR MaLR -182 406 204 1024 250 21 8 chrY 5003130 5003370 -46510214 - MIR SINE MIR -13 249 7 318 239 15 0 chrY 5003782 5003849 -46509735 + MER94 DNA DNA 64 131 -3 531 90 0 0 chrY 5004400 5004478 -46509106 + (TC)n Simple_repeat Simple_repeat 1 78 0 192 152 0 0 chrY 5004521 5004554 -46509030 + A-rich Low_complexity Low_complexity 1 33 0 237 328 138 36 chrY 5004769 5005132 -46508452 + L2 LINE L2 2578 2977 -337 480 341 8 0 chrY 5005151 5005283 -46508301 + L2 LINE L2 3181 3313 0 188 255 39 20 chrY 5005421 5005472 -46508112 - MIR3 SINE MIR -46 162 111 213 39 0 0 chrY 5005719 5005745 -46507839 + (CAAAA)n Simple_repeat Simple_repeat 2 27 0 1188 245 75 13 chrY 5006624 5007127 -46506457 + MLT1G1 LTR MaLR 1 589 -6 297 0 0 0 chrY 5007621 5007654 -46505930 + (CA)n Simple_repeat Simple_repeat 2 34 0 21 36 0 0 chrY 5008115 5008143 -46505441 + AT_rich Low_complexity Low_complexity 1 28 0 285 357 7 56 chrY 5008620 5008763 -46504821 - MIR3 SINE MIR -2 206 71 226 231 22 0 chrY 5009351 5009442 -46504142 + (TA)n Simple_repeat Simple_repeat 2 94 0 279 0 0 0 chrY 5009814 5009845 -46503739 + (A)n Simple_repeat Simple_repeat 1 31 0 2172 120 0 0 chrY 5009855 5010156 -46503428 + AluY SINE Alu 2 302 -9 215 287 140 15 chrY 5010268 5010404 -46503180 - L2 LINE L2 -193 3120 2968 1344 206 10 40 chrY 5010867 5011168 -46502416 + AluJo SINE Alu 1 292 -20 941 220 173 34 chrY 5011175 5011498 -46502086 + L1ME3A LINE L1 5796 6163 -7 21 0 0 0 chrY 5011858 5011879 -46501705 + AT_rich Low_complexity Low_complexity 1 21 0 376 169 31 15 chrY 5012151 5012216 -46501368 + Charlie5 DNA MER1_type 2 67 -2545 1993 129 4 0 chrY 5013543 5013821 -46499763 - AluSq SINE Alu -27 286 8 459 35 0 0 chrY 5014046 5014103 -46499481 + (TC)n Simple_repeat Simple_repeat 1 57 0 24 0 0 0 chrY 5014335 5014359 -46499225 + AT_rich Low_complexity Low_complexity 1 24 0 280 237 0 0 chrY 5014365 5014424 -46499160 + L1MC/D LINE L1 5548 5606 -2202 186 320 27 13 chrY 5014839 5014914 -46498670 - MIR3 SINE MIR -130 78 3 184 119 48 48 chrY 5016367 5016409 -46497175 + L3b LINE CR1 1400 1441 -142 1779 248 120 26 chrY 5016456 5016933 -46496651 + MLT1E LTR MaLR 1 536 -57 1545 68 0 5 chrY 5016933 5017124 -46496460 - L1PA4 LINE L1 -6 6149 5960 1779 248 120 26 chrY 5017124 5017187 -46496397 + MLT1E LTR MaLR 536 592 -1 4350 80 14 16 chrY 5017188 5018223 -46495361 + MER11A LTR ERVK 1 1266 0 370 236 39 99 chrY 5018969 5019151 -46494433 + MIR SINE MIR 79 249 -13 1695 264 90 104 chrY 5019232 5019477 -46494107 - L2 LINE L2 0 3313 3066 2024 159 3 0 chrY 5019477 5019786 -46493798 + AluSx SINE Alu 3 312 0 1695 264 90 104 chrY 5019786 5020934 -46492650 - L2 LINE L2 -247 3066 1969 1278 203 8 8 chrY 5021514 5021770 -46491814 + L1MD3 LINE L1 7717 7972 -23 751 122 0 104 chrY 5022025 5022160 -46491424 - L1MB4 LINE L1 0 6180 6063 1556 207 0 10 chrY 5022160 5022464 -46491120 - AluJo SINE Alu -11 301 1 751 122 0 104 chrY 5022464 5022492 -46491092 - L1MB4 LINE L1 -117 6063 6034 346 287 185 30 chrY 5022997 5023332 -46490252 - Charlie8 DNA MER1_type -1920 497 111 1833 170 21 0 chrY 5023643 5023932 -46489652 - AluJb SINE Alu -17 295 1 6842 195 14 25 chrY 5025595 5026982 -46486602 + L1P LINE L1 12 1384 -4762 11743 92 22 0 chrY 5026982 5029340 -46484244 + L1PA6 LINE L1 3763 6152 -2 777 250 40 0 chrY 5030297 5030473 -46483111 + MER3 DNA MER1_type 27 209 0 587 174 157 6 chrY 5030482 5030636 -46482948 - MER5A DNA MER1_type -5 184 4 235 217 43 11 chrY 5030754 5030846 -46482738 - Charlie7 DNA MER1_type -105 2507 2413 844 273 50 66 chrY 5030859 5031240 -46482344 - Charlie7 DNA MER1_type -1919 693 319 250 313 18 0 chrY 5031296 5031408 -46482176 - Charlie7 DNA MER1_type -2415 197 84 2022 135 0 3 chrY 5031717 5032006 -46481578 + AluSc SINE Alu 6 293 -16 279 274 54 41 chrY 5032028 5032269 -46481315 + L1 LINE L1 4737 4982 -1164 945 207 69 20 chrY 5032275 5032478 -46481106 + MER20 DNA MER1_type 5 217 -2 209 233 58 126 chrY 5032552 5032655 -46480929 + MIR SINE MIR 56 151 -111 183 357 0 0 chrY 5032862 5032904 -46480680 + L2 LINE L2 3154 3195 -77 1375 208 0 64 chrY 5036820 5037174 -46476410 - AluJo SINE Alu 0 312 1 345 252 38 63 chrY 5037690 5037849 -46475735 - MIR3 SINE MIR -43 165 11 441 253 175 0 chrY 5037952 5038106 -46475478 + MER5A DNA MER1_type 9 189 0 536 304 132 9 chrY 5038518 5038738 -46474846 + MIR SINE MIR 16 262 0 1577 170 76 3 chrY 5038857 5039146 -46474438 + AluJb SINE Alu 1 310 -2 749 190 0 0 chrY 5039157 5039278 -46474306 + FLAM_C SINE Alu 3 123 -20 375 60 0 0 chrY 5039278 5039328 -46474256 + (GA)n Simple_repeat Simple_repeat 1 50 0 918 73 0 0 chrY 5039488 5039611 -46473973 + (GGGAA)n Simple_repeat Simple_repeat 3 125 0 1258 171 45 87 chrY 5040933 5041177 -46472407 + AluJb SINE Alu 1 231 -81 2305 75 7 10 chrY 5041177 5041482 -46472102 - AluY SINE Alu -7 304 1 1258 171 45 87 chrY 5041482 5041547 -46472037 + AluJb SINE Alu 231 297 -15 231 114 0 0 chrY 5041618 5041653 -46471931 + (A)n Simple_repeat Simple_repeat 1 35 0 278 211 111 0 chrY 5041986 5042076 -46471508 - L1MC4a LINE L1 -1635 6173 6074 1665 159 3 26 chrY 5042279 5042581 -46471003 + AluSq SINE Alu 9 303 -10 414 259 239 24 chrY 5042592 5042797 -46470787 - L1MC4a LINE L1 -1946 5862 5614 628 40 0 0 chrY 5042805 5042881 -46470703 + L1MA1 LINE L1 6227 6302 0 269 106 0 21 chrY 5042909 5042956 -46470628 + (TA)n Simple_repeat Simple_repeat 2 47 0 241 265 51 82 chrY 5043082 5043278 -46470306 - L1MC4a LINE L1 -2359 5449 5260 702 147 10 0 chrY 5043353 5043455 -46470129 - AluSg/x SINE Alu -17 292 190 366 299 107 27 chrY 5044203 5044427 -46469157 + L1MC4a LINE L1 5484 5725 -396 275 263 18 26 chrY 5044488 5044602 -46468982 + L1MC4a LINE L1 5814 5926 -1882 23 0 0 0 chrY 5044624 5044647 -46468937 + AT_rich Low_complexity Low_complexity 1 23 0 1429 189 0 12 chrY 5044880 5045139 -46468445 - AluJo SINE Alu -13 299 44 2053 107 3 14 chrY 5045147 5045436 -46468148 - AluSc SINE Alu -11 298 13 2750 132 30 0 chrY 5045999 5046454 -46467130 + MER1A DNA MER1_type 1 529 0 358 172 134 112 chrY 5046491 5046531 -46467053 + MER5A DNA MER1_type 39 77 -112 1971 154 0 3 chrY 5046531 5046830 -46466754 + AluSg SINE Alu 3 300 -10 358 172 134 112 chrY 5046830 5046923 -46466661 + MER5A DNA MER1_type 77 175 -14 671 219 11 27 chrY 5047081 5047264 -46466320 + MER96B DNA MER1_type? 1 180 -237 1495 167 0 15 chrY 5047264 5047528 -46466056 + AluJb SINE Alu 1 260 -52 430 152 89 0 chrY 5047559 5047638 -46465946 + MER96B DNA MER1_type? 168 253 -164 1725 178 0 3 chrY 5048174 5048466 -46465118 + AluJb SINE Alu 1 291 -21 312 235 17 92 chrY 5048527 5048646 -46464938 + MIR SINE MIR 119 228 -34 233 322 79 38 chrY 5049251 5049340 -46464244 + MIR SINE MIR 71 164 -44 1065 176 0 0 chrY 5050138 5050303 -46463281 - AluSg/x SINE Alu -76 234 70 415 257 126 50 chrY 5050454 5050676 -46462908 - MER102b DNA MER1_type -25 316 78 200 238 0 0 chrY 5051191 5051233 -46462351 + A-rich Low_complexity Low_complexity 1 42 0 1255 154 5 32 chrY 5052065 5052286 -46461298 - L1MB5 LINE L1 0 6174 5960 5050 170 12 31 chrY 5052329 5053348 -46460236 - L1MA9 LINE L1 -39 6273 5275 246 62 0 0 chrY 5053633 5053665 -46459919 + (CA)n Simple_repeat Simple_repeat 2 33 0 4440 181 7 3 chrY 5054271 5055022 -46458562 + MER6 DNA MER2_type 111 864 -1 236 207 9 153 chrY 5055799 5055910 -46457674 + MER5A DNA MER1_type 11 105 -84 254 291 68 17 chrY 5056280 5056397 -46457187 + L2 LINE L2 3191 3313 0 571 174 0 33 chrY 5058049 5058170 -46455414 - Charlie1 DNA MER1_type -25 2736 2620 * 832 170 211 5 chrY 5058158 5058352 -46455232 - Charlie1 DNA MER1_type -2527 234 1 573 267 186 5 chrY 5058721 5058942 -46454642 + MIR SINE MIR 2 262 0 26 30 0 0 chrY 5059054 5059087 -46454497 + AT_rich Low_complexity Low_complexity 1 33 0 1268 173 21 158 chrY 5059232 5059655 -46453929 + MLT1A1 LTR MaLR 1 365 0 357 232 14 0 chrY 5059656 5059725 -46453859 - L2 LINE L2 -17 3255 3186 473 115 42 0 chrY 5060402 5060498 -46453086 + CT-rich Low_complexity Low_complexity 2 101 0 1463 230 17 0 chrY 5060498 5060666 -46452918 - AluJb SINE Alu -7 305 128 185 0 40 0 chrY 5060666 5060691 -46452893 + (TTTTG)n Simple_repeat Simple_repeat 2 27 0 1463 230 17 0 chrY 5060691 5060822 -46452762 - AluJb SINE Alu -184 128 1 927 235 11 0 chrY 5061025 5061212 -46452372 + AluJo SINE Alu 121 309 -3 23 33 0 0 chrY 5061237 5061267 -46452317 + AT_rich Low_complexity Low_complexity 1 30 0 180 0 0 0 chrY 5062159 5062179 -46451405 + (TA)n Simple_repeat Simple_repeat 2 21 0 * 327 49 0 0 chrY 5062178 5062219 -46451365 + (TG)n Simple_repeat Simple_repeat 2 42 0 25 0 0 0 chrY 5062857 5062882 -46450702 + AT_rich Low_complexity Low_complexity 1 25 0 22 70 0 0 chrY 5062987 5063030 -46450554 + AT_rich Low_complexity Low_complexity 1 43 0 718 279 14 9 chrY 5063663 5063885 -46449699 + MIR SINE MIR 10 232 -30 1278 237 105 50 chrY 5063936 5064401 -46449183 + MLT1D LTR MaLR 15 505 0 518 259 93 58 chrY 5064746 5065360 -46448224 - L1MEd LINE L1 -4862 1343 784 2106 132 0 3 chrY 5066170 5066465 -46447119 + AluY SINE Alu 1 294 -17 1163 185 9 36 chrY 5066512 5066734 -46446850 + MER58A DNA MER1_type 9 224 0 387 41 0 0 chrY 5067274 5067323 -46446261 + (CA)n Simple_repeat Simple_repeat 2 50 0 670 286 15 17 chrY 5067798 5068509 -46445075 + BSR/Beta Satellite Satellite 1 709 -46 961 290 31 7 chrY 5068571 5068857 -46444727 + BSR/Beta Satellite Satellite 18 310 -69 582 255 17 27 chrY 5068916 5069179 -46444405 + BSR/Beta Satellite Satellite 1 260 -15 541 275 32 36 chrY 5069388 5070080 -46443504 + BSR/Beta Satellite Satellite 1 689 -21 277 302 27 54 chrY 5070235 5070384 -46443200 + BSR/Beta Satellite Satellite 2 146 -6 1388 274 29 9 chrY 5070471 5071243 -46442341 + BSR/Beta Satellite Satellite 1 787 -7 711 285 15 12 chrY 5071349 5071683 -46441901 + BSR/Beta Satellite Satellite 1 335 -47 494 226 0 21 chrY 5071695 5071827 -46441757 + BSR/Beta Satellite Satellite 1 129 -34 608 252 31 51 chrY 5071867 5072594 -46440990 + BSR/Beta Satellite Satellite 1 712 0 954 301 19 12 chrY 5072624 5072949 -46440635 + BSR/Beta Satellite Satellite 35 361 -18 902 277 24 18 chrY 5072971 5074513 -46439071 + BSR/Beta Satellite Satellite 1 1551 -35 975 268 25 45 chrY 5074556 5076051 -46437533 + BSR/Beta Satellite Satellite 1 1464 -38 351 340 31 0 chrY 5076200 5076356 -46437228 + BSR/Beta Satellite Satellite 1 160 -17 1237 296 22 0 chrY 5076461 5076906 -46436678 + BSR/Beta Satellite Satellite 1 454 -50 587 260 7 17 chrY 5076943 5077247 -46436337 + BSR/Beta Satellite Satellite 1 300 -7 791 313 8 11 chrY 5077354 5077619 -46435965 + BSR/Beta Satellite Satellite 35 298 -81 2122 117 0 20 chrY 5077619 5077919 -46435665 + AluY SINE Alu 1 294 -17 973 264 26 31 chrY 5077950 5079563 -46434021 + BSR/Beta Satellite Satellite 1 1604 0 1155 274 27 27 chrY 5079646 5080345 -46433239 + BSR/Beta Satellite Satellite 1 699 -5 645 277 14 30 chrY 5080465 5081162 -46432422 + BSR/Beta Satellite Satellite 1 685 -17 270 305 67 29 chrY 5081315 5081420 -46432164 + BSR/Beta Satellite Satellite 40 148 -4 1210 311 17 0 chrY 5081555 5081977 -46431607 + BSR/Beta Satellite Satellite 1 429 0 255 315 0 69 chrY 5081991 5082121 -46431463 + BSR/Beta Satellite Satellite 15 135 -7 * 1286 289 17 23 chrY 5082025 5083782 -46429802 + BSR/Beta Satellite Satellite 1 1746 -30 598 267 15 15 chrY 5083817 5084173 -46429411 + BSR/Beta Satellite Satellite 1 356 -5 1113 257 27 21 chrY 5084202 5084533 -46429051 + BSR/Beta Satellite Satellite 29 361 -18 903 316 41 11 chrY 5084555 5085008 -46428576 + BSR/Beta Satellite Satellite 1 466 -52 502 269 18 17 chrY 5085074 5085742 -46427842 + BSR/Beta Satellite Satellite 1 668 -5 566 253 34 8 chrY 5085836 5086133 -46427451 + BSR/Beta Satellite Satellite 1 304 -49 527 281 11 35 chrY 5086212 5086516 -46427068 + BSR/Beta Satellite Satellite 1 296 -14 529 254 34 46 chrY 5086644 5087335 -46426249 + BSR/Beta Satellite Satellite 1 682 -27 1370 281 17 17 chrY 5087651 5088525 -46425059 + BSR/Beta Satellite Satellite 1 873 -10 1187 288 19 6 chrY 5088646 5089230 -46424354 + BSR/Beta Satellite Satellite 1 591 -125 559 275 37 38 chrY 5089347 5089915 -46423669 + BSR/Beta Satellite Satellite 1 567 -7 543 302 15 17 chrY 5090104 5090909 -46422675 + BSR/Beta Satellite Satellite 1 802 -9 250 293 67 13 chrY 5091628 5091703 -46421881 - LTR32 LTR ERVL -1 470 392 1604 180 22 0 chrY 5091703 5091981 -46421603 - AluSp SINE Alu -29 284 1 339 284 43 43 chrY 5091982 5092098 -46421486 - LTR32 LTR ERVL -341 130 15 319 49 0 0 chrY 5094821 5094862 -46418722 - L1P LINE L1 -2774 3372 3332 1990 204 35 88 chrY 5094940 5095590 -46417994 + LTR6A LTR ERV1 1 564 0 44147 73 3 2 chrY 5095590 5104451 -46409133 + HERVS71 LTR ERV1 1 8910 -68 1928 215 34 87 chrY 5104451 5105101 -46408483 + LTR6A LTR ERV1 1 564 0 11142 82 3 0 chrY 5105209 5106716 -46406868 - L1PA5 LINE L1 -2774 3372 1862 15448 83 5 2 chrY 5106720 5109518 -46404066 + L1PA5 LINE L1 3365 6173 0 1510 208 0 7 chrY 5109904 5110188 -46403396 + AluSc SINE Alu 3 284 -25 1597 196 3 3 chrY 5110965 5111292 -46402292 - AluSq SINE Alu 0 327 1 22 0 0 0 chrY 5111318 5111340 -46402244 + AT_rich Low_complexity Low_complexity 1 22 0 36 23 0 0 chrY 5112458 5112501 -46401083 + AT_rich Low_complexity Low_complexity 1 43 0 7047 275 56 11 chrY 5112515 5113550 -46400034 + L1PA12 LINE L1 1 988 -6593 504 0 0 0 chrY 5113550 5113606 -46399978 + (TTTCC)n Simple_repeat Simple_repeat 1 56 0 7047 275 56 11 chrY 5113606 5113785 -46399799 + L1PA12 LINE L1 988 1158 -6423 1701 188 3 0 chrY 5113785 5114077 -46399507 - AluSp SINE Alu -19 294 2 7047 275 56 11 chrY 5114077 5114777 -46398807 + L1PA12 LINE L1 1158 2002 -5579 2703 284 108 61 chrY 5114784 5116455 -46397129 + L1PA13 LINE L1 347 1938 -4859 195 100 0 0 chrY 5116455 5116485 -46397099 + (TAA)n Simple_repeat Simple_repeat 1 30 0 2703 284 108 61 chrY 5116485 5117051 -46396533 + L1PA13 LINE L1 1938 2476 -4321 2058 125 0 41 chrY 5117051 5117370 -46396214 + AluY SINE Alu 2 307 -4 2703 284 108 61 chrY 5117370 5117651 -46395933 + L1PA13 LINE L1 2476 3154 -3643 45 0 0 0 chrY 5119018 5119063 -46394521 + AT_rich Low_complexity Low_complexity 1 45 0 236 300 14 0 chrY 5119063 5119133 -46394451 + L1M4c LINE L1 414 484 -5819 1710 195 0 0 chrY 5119489 5119792 -46393792 + AluSq SINE Alu 2 304 -9 711 69 0 0 chrY 5119810 5119912 -46393672 + (GAAAA)n Simple_repeat Simple_repeat 4 105 0 1804 132 34 0 chrY 5119924 5120190 -46393394 - AluSq SINE Alu 0 313 39 25 0 0 0 chrY 5120396 5120421 -46393163 + AT_rich Low_complexity Low_complexity 1 25 0 21 36 0 0 chrY 5120488 5120516 -46393068 + AT_rich Low_complexity Low_complexity 1 28 0 225 280 21 0 chrY 5120559 5120652 -46392932 + A-rich Low_complexity Low_complexity 3 97 0 393 306 82 22 chrY 5120719 5120987 -46392597 + L1M4c LINE L1 1374 1657 -4727 792 284 94 33 chrY 5121013 5121643 -46391941 + L1M4c LINE L1 2446 3113 -3269 1516 200 7 3 chrY 5121663 5121948 -46391636 - AluSc SINE Alu -23 286 1 231 264 0 0 chrY 5121980 5122033 -46391551 + L1 LINE L1 4527 4579 -1567 1118 279 20 8 chrY 5122045 5122650 -46390934 + BSR/Beta Satellite Satellite 1 612 -59 579 274 24 23 chrY 5122758 5123744 -46389840 + BSR/Beta Satellite Satellite 1 987 -46 1150 303 23 7 chrY 5123880 5124509 -46389075 + BSR/Beta Satellite Satellite 1 639 0 228 302 112 26 chrY 5124603 5124719 -46388865 + BSR/Beta Satellite Satellite 25 150 -2 641 275 15 25 chrY 5124776 5125483 -46388101 + BSR/Beta Satellite Satellite 1 699 -66 228 370 36 0 chrY 5125518 5125656 -46387928 + BSR/Beta Satellite Satellite 6 148 -4 1220 294 29 5 chrY 5125786 5126265 -46387319 + BSR/Beta Satellite Satellite 1 490 -15 1529 196 3 20 chrY 5126272 5126401 -46387183 + AluSg SINE Alu 1 131 -179 551 104 9 0 chrY 5126401 5126507 -46387077 + (TAGA)n Simple_repeat Simple_repeat 4 110 0 1529 196 3 20 chrY 5126507 5126683 -46386901 + AluSg SINE Alu 131 301 -9 1189 300 18 9 chrY 5126715 5127579 -46386005 + BSR/Beta Satellite Satellite 1 871 -254 255 250 22 43 chrY 5127578 5127670 -46385914 - LTR22A LTR ERVK 0 458 369 * 1365 251 44 18 chrY 5127804 5128191 -46385393 - LTR22 LTR ERVK -112 397 1 4506 195 42 4 chrY 5128191 5129210 -46384374 - HERVK22 LTR ERVK 0 6837 3180 447 158 0 13 chrY 5129208 5129284 -46384300 - HERVK22 LTR ERVK -3960 2877 2803 * 1118 159 92 59 chrY 5129284 5129523 -46384061 - LTR17 LTR ERV1 0 780 534 2510 157 2 16 chrY 5129524 5129950 -46383634 - LTR17 LTR ERV1 -360 420 1 4182 165 55 16 chrY 5129950 5131175 -46382409 - HERVK22 LTR ERVK -4031 2806 1 323 273 0 0 chrY 5131175 5131252 -46382332 - LTR22A LTR ERVK 0 458 382 264 170 0 0 chrY 5131292 5131345 -46382239 + (CAG)n Simple_repeat Simple_repeat 3 55 0 1231 242 74 25 chrY 5131426 5131790 -46381794 - LTR22 LTR ERVK -127 382 1 679 330 0 0 chrY 5131792 5132007 -46381577 + BSR/Beta Satellite Satellite 121 335 -44 379 295 0 0 chrY 5132018 5132146 -46381438 + BSR/Beta Satellite Satellite 1 128 -34 580 260 35 33 chrY 5132191 5132640 -46380944 + BSR/Beta Satellite Satellite 1 449 -46 1049 297 17 8 chrY 5132657 5133454 -46380130 + BSR/Beta Satellite Satellite 1 804 -35 516 279 21 27 chrY 5133497 5134495 -46379089 + BSR/Beta Satellite Satellite 1 991 -5 1375 280 10 12 chrY 5134667 5135272 -46378312 + BSR/Beta Satellite Satellite 1 603 -15 284 300 19 19 chrY 5135363 5135527 -46378057 + BSR/Beta Satellite Satellite 1 164 -58 504 277 16 23 chrY 5135684 5135957 -46377627 + BSR/Beta Satellite Satellite 1 270 -10 1154 293 4 18 chrY 5135982 5136401 -46377183 + BSR/Beta Satellite Satellite 1 413 -23 576 278 14 21 chrY 5136503 5137155 -46376429 + BSR/Beta Satellite Satellite 1 646 -4 364 303 0 42 chrY 5137227 5137369 -46376215 + BSR/Beta Satellite Satellite 3 138 -4 389 337 8 0 chrY 5137381 5137578 -46376006 + BSR/Beta Satellite Satellite 1 198 -6 1041 297 3 0 chrY 5137674 5137970 -46375614 + BSR/Beta Satellite Satellite 21 317 -62 580 295 2 5 chrY 5137998 5138371 -46375213 + BSR/Beta Satellite Satellite 1 372 -35 278 294 32 26 chrY 5138479 5138695 -46374889 + BSR/Beta Satellite Satellite 1 217 -6 * 555 258 11 46 chrY 5138609 5139140 -46374444 + BSR/Beta Satellite Satellite 1 512 -11 423 292 18 37 chrY 5139222 5139730 -46373854 + BSR/Beta Satellite Satellite 1 498 -5 548 282 14 14 chrY 5139749 5140301 -46373283 + BSR/Beta Satellite Satellite 1 551 0 1174 263 38 2 chrY 5140398 5140787 -46372797 + BSR/Beta Satellite Satellite 1 402 -6 322 294 28 32 chrY 5140798 5141089 -46372495 + BSR/Beta Satellite Satellite 1 289 0 506 269 9 39 chrY 5141207 5141854 -46371730 + BSR/Beta Satellite Satellite 1 627 0 680 316 25 0 chrY 5142238 5142507 -46371077 + BSR/Beta Satellite Satellite 1 275 -171 549 236 17 36 chrY 5142718 5143565 -46370019 + BSR/Beta Satellite Satellite 1 830 -22 899 270 32 35 chrY 5143773 5144084 -46369500 + BSR/Beta Satellite Satellite 21 330 -49 292 344 12 24 chrY 5144137 5144326 -46369258 + BSR/Beta Satellite Satellite 1 186 -7 306 345 0 0 chrY 5144409 5144528 -46369056 + BSR/Beta Satellite Satellite 4 122 -20 503 263 16 40 chrY 5144660 5145289 -46368295 + BSR/Beta Satellite Satellite 1 613 -23 328 357 37 4 chrY 5145447 5145658 -46367926 + BSR/Beta Satellite Satellite 1 217 -7 1100 288 24 4 chrY 5145677 5146097 -46367487 + BSR/Beta Satellite Satellite 1 428 -7 590 264 22 15 chrY 5146113 5146494 -46367090 + BSR/Beta Satellite Satellite 1 383 -44 2171 100 31 0 chrY 5146567 5146858 -46366726 - AluY SINE Alu -11 300 1 1142 293 6 6 chrY 5146873 5147543 -46366041 + BSR/Beta Satellite Satellite 1 670 -48 411 253 0 0 chrY 5147555 5147669 -46365915 + BSR/Beta Satellite Satellite 1 114 -50 579 300 6 18 chrY 5147763 5148173 -46365411 + BSR/Beta Satellite Satellite 1 404 -63 857 283 20 31 chrY 5148330 5148868 -46364716 + BSR/Beta Satellite Satellite 1 532 -20 1945 252 69 20 chrY 5148894 5149652 -46363932 - L1M4 LINE L1 -729 5445 4629 180 0 0 0 chrY 5149652 5149672 -46363912 + (TTTG)n Simple_repeat Simple_repeat 2 21 0 1945 252 69 20 chrY 5149672 5149914 -46363670 - L1M4 LINE L1 -1545 4629 4400 363 248 8 8 chrY 5149918 5150039 -46363545 + L1 LINE L1 3905 4025 -2121 4656 163 2 10 chrY 5150045 5150831 -46362753 - LTR17 LTR ERV1 0 780 1 1944 112 0 7 chrY 5150831 5151125 -46362459 - HERV17 LTR ERV1 0 8626 8335 295 26 0 0 chrY 5151115 5151154 -46362430 - HERV17 LTR ERV1 -1078 7548 7510 * 3941 103 4 0 chrY 5151147 5151709 -46361875 - HERV17 LTR ERV1 -2607 6019 5456 * 6279 118 4 2 chrY 5151696 5152648 -46360936 - HERV17 LTR ERV1 -3923 4703 3750 6780 113 9 1 chrY 5152667 5152977 -46360607 - HERV17 LTR ERV1 -5166 3460 3154 180 0 0 0 chrY 5152977 5152997 -46360587 + (TTTA)n Simple_repeat Simple_repeat 1 20 0 6780 113 9 1 chrY 5152997 5153709 -46359875 - HERV17 LTR ERV1 -5472 3154 2430 2159 121 0 6 chrY 5153698 5154030 -46359554 - HERV17 LTR ERV1 -6616 2010 1681 * 9557 140 42 38 chrY 5154029 5155885 -46357699 - HERV17 LTR ERV1 -6762 1864 2 4515 173 8 6 chrY 5155885 5156661 -46356923 - LTR17 LTR ERV1 0 780 4 981 234 7 0 chrY 5156691 5156960 -46356624 + L1 LINE L1 4057 4327 -1819 1899 141 3 3 chrY 5157114 5157428 -46356156 - AluY SINE Alu 0 314 1 1329 251 27 51 chrY 5157645 5158055 -46355529 + MER61B LTR ERV1 1 400 -25 207 173 0 0 chrY 5158059 5158111 -46355473 + A-rich Low_complexity Low_complexity 1 52 0 352 236 24 39 chrY 5158139 5158266 -46355318 + MER61B-int LTR ERV1 19 143 -5074 416 244 17 17 chrY 5158324 5158443 -46355141 + MER61B-int LTR ERV1 280 398 -4819 1588 199 12 39 chrY 5158506 5158937 -46354647 + MER61B-int LTR ERV1 422 840 -4377 1147 211 31 0 chrY 5158937 5159198 -46354386 + MER61B-int LTR ERV1 944 1212 -4005 * 9195 219 69 64 chrY 5159194 5163029 -46350555 + MER61B-int LTR ERV1 1361 5216 -1 1667 219 16 40 chrY 5163034 5163463 -46350121 + MER61B LTR ERV1 5 423 -2 317 285 16 8 chrY 5163493 5163616 -46349968 - L1 LINE L1 -1293 4853 4730 1116 234 23 23 chrY 5163699 5163955 -46349629 + AluJo SINE Alu 13 268 -44 306 352 0 0 chrY 5164152 5164328 -46349256 - L1 LINE L1 -3324 2822 2647 297 196 54 11 chrY 5164357 5164449 -46349135 + T-rich Low_complexity Low_complexity 2 97 0 376 194 24 59 chrY 5164506 5164676 -46348908 + T-rich Low_complexity Low_complexity 4 167 0 195 139 0 0 chrY 5164699 5164735 -46348849 + (TTTTA)n Simple_repeat Simple_repeat 3 38 0 202 197 56 14 chrY 5164752 5164823 -46348761 + T-rich Low_complexity Low_complexity 5 78 0 1396 204 62 0 chrY 5165235 5165509 -46348075 - AluSq SINE Alu -20 293 3 1396 280 22 32 chrY 5166413 5166874 -46346710 - LTR32 LTR ERVL -1 470 15 405 86 0 0 chrY 5168724 5168782 -46344802 + (TG)n Simple_repeat Simple_repeat 1 58 0 21 100 0 0 chrY 5169154 5169224 -46344360 + AT_rich Low_complexity Low_complexity 1 70 0 31 58 0 0 chrY 5169643 5169695 -46343889 + AT_rich Low_complexity Low_complexity 1 52 0 1542 195 50 0 chrY 5170080 5170199 -46343385 + AluY SINE Alu 1 113 -198 6170 44 5 0 chrY 5170199 5170948 -46342636 + L1PA3 LINE L1 5403 6155 0 1542 195 50 0 chrY 5170948 5171110 -46342474 + AluY SINE Alu 113 296 -15 29 28 0 0 chrY 5171614 5171650 -46341934 + AT_rich Low_complexity Low_complexity 1 36 0 1668 175 11 7 chrY 5172970 5173256 -46340328 - AluSc SINE Alu -14 295 9 5134 268 17 3 chrY 5173303 5175032 -46338552 + L1PA12 LINE L1 3 2007 -5574 1283 298 23 20 chrY 5175026 5175425 -46338159 + L1PA13 LINE L1 335 734 -6053 * 372 368 144 14 chrY 5175488 5175849 -46337735 + L1PA13 LINE L1 851 1258 -5529 1888 260 63 42 chrY 5175865 5176656 -46336928 + L1PA13 LINE L1 1410 2217 -4570 1616 247 117 24 chrY 5176653 5177328 -46336256 + L1PA13 LINE L1 2425 3162 -3635 * 253 343 22 15 chrY 5178236 5178373 -46335211 + L1M4c LINE L1 418 555 -5748 1678 188 26 0 chrY 5178719 5179022 -46334562 + AluSq SINE Alu 3 313 0 24 67 0 0 chrY 5179336 5179381 -46334203 + AT_rich Low_complexity Low_complexity 1 45 0 262 237 13 0 chrY 5179406 5179482 -46334102 + A-rich Low_complexity Low_complexity 3 79 0 284 329 47 12 chrY 5179548 5179803 -46333781 + L1M4c LINE L1 1370 1633 -4751 572 298 77 5 chrY 5179996 5180375 -46333209 + L1M4c LINE L1 2701 3106 -3276 286 23 47 0 chrY 5180378 5180421 -46333163 + (TTTA)n Simple_repeat Simple_repeat 4 48 0 1271 230 7 11 chrY 5180426 5180704 -46332880 - AluSc SINE Alu -32 277 1 277 281 56 43 chrY 5180736 5181039 -46332545 + L1 LINE L1 4526 4832 -1314 536 268 8 10 chrY 5181048 5181365 -46332219 + BSR/Beta Satellite Satellite 1 316 0 999 288 22 20 chrY 5181395 5182722 -46330862 + BSR/Beta Satellite Satellite 1 1328 -39 455 274 19 19 chrY 5182775 5183284 -46330300 + BSR/Beta Satellite Satellite 1 509 -46 1017 281 14 20 chrY 5183419 5184048 -46329536 + BSR/Beta Satellite Satellite 1 625 0 285 299 31 20 chrY 5184135 5184282 -46329302 + BSR/Beta Satellite Satellite 1 148 -58 511 262 6 33 chrY 5184302 5184931 -46328653 + BSR/Beta Satellite Satellite 1 612 -28 246 325 34 17 chrY 5185099 5185216 -46328368 + BSR/Beta Satellite Satellite 258 376 -3 879 289 23 7 chrY 5185333 5186190 -46327394 + BSR/Beta Satellite Satellite 1 870 -2 1003 309 33 8 chrY 5186218 5186812 -46326772 + BSR/Beta Satellite Satellite 1 608 -122 305 319 11 0 chrY 5186923 5187017 -46326567 + BSR/Beta Satellite Satellite 1 95 -47 505 279 21 14 chrY 5187125 5187910 -46325674 + BSR/Beta Satellite Satellite 1 790 -25 575 259 34 26 chrY 5187944 5188145 -46325439 + BSR/Beta Satellite Satellite 1 202 -6 594 295 29 24 chrY 5188544 5188943 -46324641 + BSR/Beta Satellite Satellite 1 400 -18 579 270 10 25 chrY 5189080 5189691 -46323893 + BSR/Beta Satellite Satellite 1 602 -30 1193 288 26 18 chrY 5190004 5191810 -46321774 + BSR/Beta Satellite Satellite 1 1821 -49 575 282 31 24 chrY 5191928 5192904 -46320680 + BSR/Beta Satellite Satellite 1 982 -2 1151 300 20 12 chrY 5192993 5193545 -46320039 + BSR/Beta Satellite Satellite 1 556 -12 344 284 46 26 chrY 5193591 5193754 -46319830 + BSR/Beta Satellite Satellite 1 166 -23 951 293 39 13 chrY 5193826 5194284 -46319300 + BSR/Beta Satellite Satellite 1 469 -21 549 259 20 44 chrY 5194312 5194821 -46318763 + BSR/Beta Satellite Satellite 1 496 0 423 291 20 35 chrY 5194835 5195392 -46318192 + BSR/Beta Satellite Satellite 1 548 0 1159 289 13 7 chrY 5195489 5195790 -46317794 + BSR/Beta Satellite Satellite 28 330 -49 591 286 9 32 chrY 5195825 5196151 -46317433 + BSR/Beta Satellite Satellite 1 318 -40 680 245 14 35 chrY 5196425 5196969 -46316615 + BSR/Beta Satellite Satellite 1 532 -27 338 341 22 7 chrY 5197137 5197272 -46316312 + BSR/Beta Satellite Satellite 2 138 -14 1253 305 23 24 chrY 5197375 5198926 -46314658 + BSR/Beta Satellite Satellite 1 1549 -75 404 267 37 14 chrY 5198964 5199097 -46314487 + BSR/Beta Satellite Satellite 1 136 -39 515 303 11 17 chrY 5199146 5199967 -46313617 + BSR/Beta Satellite Satellite 1 816 -60 1242 300 14 8 chrY 5200028 5200778 -46312806 + BSR/Beta Satellite Satellite 1 754 -47 574 276 6 19 chrY 5200830 5201256 -46312328 + BSR/Beta Satellite Satellite 1 420 -5 241 320 0 0 chrY 5201275 5201350 -46312234 + BSR/Beta Satellite Satellite 34 108 -44 * 309 297 33 31 chrY 5201283 5201521 -46312063 + BSR/Beta Satellite Satellite 1 238 -10 547 274 18 48 chrY 5201674 5202391 -46311193 + BSR/Beta Satellite Satellite 1 696 -12 231 330 51 0 chrY 5202565 5202683 -46310901 + BSR/Beta Satellite Satellite 19 142 -10 1356 264 18 10 chrY 5202837 5203333 -46310251 + BSR/Beta Satellite Satellite 1 499 0 673 274 36 17 chrY 5203377 5204078 -46309506 + BSR/Beta Satellite Satellite 1 714 -13 1098 283 28 6 chrY 5204091 5204413 -46309171 + BSR/Beta Satellite Satellite 1 329 -50 565 280 20 21 chrY 5204436 5205624 -46307960 + BSR/Beta Satellite Satellite 1 1186 -49 979 295 27 33 chrY 5205763 5206378 -46307206 + BSR/Beta Satellite Satellite 1 611 -15 575 270 21 32 chrY 5206662 5207362 -46306222 + BSR/Beta Satellite Satellite 1 692 -7 233 425 0 0 chrY 5207519 5207658 -46305926 + BSR/Beta Satellite Satellite 5 143 -9 1244 285 19 21 chrY 5207677 5208641 -46304943 + BSR/Beta Satellite Satellite 1 962 -50 984 319 39 7 chrY 5208655 5209458 -46304126 + BSR/Beta Satellite Satellite 1 829 -15 584 257 55 20 chrY 5209484 5210329 -46303255 + BSR/Beta Satellite Satellite 1 874 0 929 288 21 12 chrY 5210359 5210685 -46302899 + BSR/Beta Satellite Satellite 35 363 -16 1497 189 121 22 chrY 5210836 5211207 -46302377 - LTR22 LTR ERVK -172 408 1 414 282 26 17 chrY 5211191 5211391 -46302193 + BSR/Beta Satellite Satellite 1 201 0 * 1112 308 29 8 chrY 5211427 5212630 -46300954 + BSR/Beta Satellite Satellite 1 1227 -46 612 262 17 38 chrY 5212680 5212921 -46300663 + BSR/Beta Satellite Satellite 1 235 -44 577 252 23 4 chrY 5212965 5213314 -46300270 + BSR/Beta Satellite Satellite 1 355 -39 521 287 18 13 chrY 5213358 5213638 -46299946 + BSR/Beta Satellite Satellite 1 281 -6 1305 289 14 23 chrY 5213745 5215190 -46298394 + BSR/Beta Satellite Satellite 1 1431 -3 339 322 27 4 chrY 5215367 5215526 -46298058 + BSR/Beta Satellite Satellite 1 162 -15 931 312 26 2 chrY 5215651 5216054 -46297530 + BSR/Beta Satellite Satellite 1 412 0 504 277 10 32 chrY 5216113 5216459 -46297125 + BSR/Beta Satellite Satellite 1 338 -35 6590 112 23 2 chrY 5216582 5217461 -46296123 - MER11D LTR ERVK 0 897 1 36121 86 10 4 chrY 5217461 5225016 -46288568 - HERVK11D LTR ERVK 0 7752 1 6934 91 23 2 chrY 5225016 5225893 -46287691 - MER11D LTR ERVK 0 897 3 941 321 8 2 chrY 5225918 5226639 -46286945 + BSR/Beta Satellite Satellite 1 724 -46 668 281 19 19 chrY 5226699 5227764 -46285820 + BSR/Beta Satellite Satellite 1 1064 -6 561 291 21 90 chrY 5227860 5228052 -46285532 + BSR/Beta Satellite Satellite 21 225 -154 1283 6 41 0 chrY 5228052 5228221 -46285363 + (TTTC)n Simple_repeat Simple_repeat 3 178 0 561 291 21 90 chrY 5228221 5228237 -46285347 + BSR/Beta Satellite Satellite 225 241 -138 1539 189 23 7 chrY 5228237 5228539 -46285045 - AluSc SINE Alu -2 307 1 561 291 21 90 chrY 5228539 5228662 -46284922 + BSR/Beta Satellite Satellite 241 330 -49 475 278 24 30 chrY 5228725 5229050 -46284534 + BSR/Beta Satellite Satellite 1 323 -10 607 271 24 31 chrY 5229143 5229835 -46283749 + BSR/Beta Satellite Satellite 1 686 -48 356 379 8 0 chrY 5229968 5230125 -46283459 + BSR/Beta Satellite Satellite 1 158 -30 1061 274 22 13 chrY 5230184 5230830 -46282754 + BSR/Beta Satellite Satellite 1 651 -5 449 298 5 9 chrY 5230844 5231001 -46282583 + BSR/Beta Satellite Satellite 1 156 -44 963 316 15 6 chrY 5231071 5231397 -46282187 + BSR/Beta Satellite Satellite 35 363 -16 1028 308 11 4 chrY 5231413 5231862 -46281722 + BSR/Beta Satellite Satellite 1 452 -54 572 279 31 25 chrY 5232167 5232935 -46280649 + BSR/Beta Satellite Satellite 1 772 0 947 263 11 64 chrY 5233177 5233876 -46279708 + BSR/Beta Satellite Satellite 1 662 -51 572 284 5 28 chrY 5233922 5234688 -46278896 + BSR/Beta Satellite Satellite 1 748 -38 298 331 31 15 chrY 5234867 5234997 -46278587 + BSR/Beta Satellite Satellite 7 138 -14 1308 262 31 25 chrY 5235100 5236398 -46277186 + BSR/Beta Satellite Satellite 1 1305 -9 819 312 9 12 chrY 5236410 5236880 -46276704 + BSR/Beta Satellite Satellite 1 468 -35 661 226 9 0 chrY 5236922 5237085 -46276499 + BSR/Beta Satellite Satellite 1 164 -46 585 273 12 16 chrY 5237109 5237758 -46275826 + BSR/Beta Satellite Satellite 1 646 -5 914 317 16 22 chrY 5237790 5238511 -46275073 + BSR/Beta Satellite Satellite 1 716 -24 598 278 16 17 chrY 5238546 5239607 -46273977 + BSR/Beta Satellite Satellite 1 1059 -6 1111 281 18 33 chrY 5239700 5240453 -46273131 + BSR/Beta Satellite Satellite 1 741 -33 461 265 15 38 chrY 5240609 5240801 -46272783 + BSR/Beta Satellite Satellite 1 187 -15 471 265 9 33 chrY 5240837 5241214 -46272370 + BSR/Beta Satellite Satellite 1 367 -41 231 297 27 0 chrY 5241391 5241465 -46272119 + BSR/Beta Satellite Satellite 77 152 0 896 275 33 7 chrY 5241627 5242498 -46271086 + BSR/Beta Satellite Satellite 1 894 -46 979 300 17 4 chrY 5242514 5243139 -46270445 + BSR/Beta Satellite Satellite 1 633 -81 401 258 0 39 chrY 5243185 5243313 -46270271 + BSR/Beta Satellite Satellite 1 123 -43 565 279 17 25 chrY 5243366 5244308 -46269276 + BSR/Beta Satellite Satellite 1 934 0 797 270 19 19 chrY 5244413 5244676 -46268908 + BSR/Beta Satellite Satellite 36 298 -81 7952 187 26 15 chrY 5244678 5247262 -46266322 + MER61-int LTR ERV1 2141 4818 -399 243 0 0 0 chrY 5247264 5247291 -46266293 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 788 224 0 11 chrY 5247293 5247467 -46266117 + MER61-int LTR ERV1 4872 5043 -174 554 212 80 57 chrY 5247476 5247688 -46265896 - HERVKC4 LTR ERVK -2166 3096 2880 21 0 0 0 chrY 5248523 5248544 -46265040 + AT_rich Low_complexity Low_complexity 1 21 0 1309 159 0 43 chrY 5249123 5249356 -46264228 - AluSq SINE Alu -86 227 5 31 0 0 0 chrY 5250531 5250562 -46263022 + AT_rich Low_complexity Low_complexity 1 31 0 4528 285 16 15 chrY 5250578 5252329 -46261255 + L1PA12 LINE L1 1 2007 -5574 1143 319 71 5 chrY 5252360 5252783 -46260801 + L1PA13 LINE L1 346 796 -5991 336 369 6 6 chrY 5253009 5253169 -46260415 + L1PA13 LINE L1 1099 1258 -5529 2370 261 71 33 chrY 5253170 5254844 -46258740 + L1PA13 LINE L1 1394 3154 -3643 6273 132 7 14 chrY 5255922 5256978 -46256606 - MER11C LTR ERVK -23 1048 1 6988 98 0 1 chrY 5256978 5257976 -46255608 - HERVK11 LTR ERVK 0 7953 6957 * 7873 87 15 2 chrY 5257963 5259136 -46254448 - HERVK11 LTR ERVK -1188 6765 5525 869 143 0 0 chrY 5259134 5259274 -46254310 - HERVK11 LTR ERVK -3352 4601 4462 * 7304 65 4 0 chrY 5259248 5260217 -46253367 - HERVK11 LTR ERVK -4069 3884 2912 2701 106 35 2 chrY 5260209 5260790 -46252794 - HERVK11 LTR ERVK -5253 2700 1165 * 3455 164 35 14 chrY 5260765 5261418 -46252166 - HERVK11 LTR ERVK -7081 872 206 1926 162 0 0 chrY 5261406 5261734 -46251850 - HERVK11 LTR ERVK -7625 328 1 * 6183 123 6 40 chrY 5261751 5262845 -46250739 - MER11C LTR ERVK -14 1057 1 1334 246 0 0 chrY 5263562 5263839 -46249745 + AluSq SINE Alu 2 278 -35 653 12 0 24 chrY 5263842 5263925 -46249659 + (GAAA)n Simple_repeat Simple_repeat 1 81 0 2127 105 7 7 chrY 5263931 5264225 -46249359 + AluY SINE Alu 5 298 -13 487 309 7 22 chrY 5264735 5265010 -46248574 + L1M4 LINE L1 1371 1641 -4743 415 287 96 32 chrY 5265054 5265647 -46247937 + L1M4 LINE L1 2444 3066 -3316 1138 177 12 129 chrY 5265647 5265980 -46247604 - AluSg SINE Alu -6 294 1 269 325 31 24 chrY 5266005 5266297 -46247287 + L1 LINE L1 4521 4814 -1332 415 267 68 4 chrY 5266324 5266482 -46247102 + BSR/Beta Satellite Satellite 1 168 -11 233 227 11 45 chrY 5266610 5266698 -46246886 + L1M4 LINE L1 4966 5050 -1332 438 288 25 10 chrY 5266735 5266972 -46246612 + BSR/Beta Satellite Satellite 1 240 -40 768 266 70 67 chrY 5267042 5267274 -46246310 + BSR/Beta Satellite Satellite 35 270 -109 1716 185 0 7 chrY 5267274 5267571 -46246013 - AluSc SINE Alu -14 295 1 768 266 70 67 chrY 5267571 5267669 -46245915 + BSR/Beta Satellite Satellite 270 366 -13 1278 278 11 24 chrY 5267686 5269200 -46244384 + BSR/Beta Satellite Satellite 1 1495 -2 557 278 99 14 chrY 5269351 5269563 -46244021 + BSR/Beta Satellite Satellite 21 250 -129 2028 118 3 0 chrY 5269563 5269850 -46243734 + AluY SINE Alu 1 288 -23 568 107 64 4 chrY 5269850 5270089 -46243495 + (TA)n Simple_repeat Simple_repeat 1 253 0 530 311 6 9 chrY 5270096 5270565 -46243019 + BSR/Beta Satellite Satellite 1 467 -11 4158 113 2 0 chrY 5270640 5271226 -46242358 - LTR14C LTR ERVK 0 587 1 398 245 5 18 chrY 5271390 5271546 -46242038 + BSR/Beta Satellite Satellite 1 153 -15 532 279 14 28 chrY 5271579 5271970 -46241614 + BSR/Beta Satellite Satellite 1 385 -27 272 356 27 7 chrY 5272140 5272286 -46241298 + BSR/Beta Satellite Satellite 3 151 -1 616 335 12 2 chrY 5272314 5272667 -46240917 + BSR/Beta Satellite Satellite 1 356 -35 501 279 13 38 chrY 5272720 5273216 -46240368 + BSR/Beta Satellite Satellite 1 483 -7 423 257 20 46 chrY 5273237 5273486 -46240098 + BSR/Beta Satellite Satellite 1 242 -26 402 295 0 0 chrY 5273616 5273749 -46239835 + BSR/Beta Satellite Satellite 1 133 -64 1197 280 15 22 chrY 5273906 5274561 -46239023 + BSR/Beta Satellite Satellite 1 650 -52 570 262 6 29 chrY 5274788 5275439 -46238145 + BSR/Beta Satellite Satellite 1 635 0 1039 296 20 11 chrY 5275534 5276294 -46237290 + BSR/Beta Satellite Satellite 1 1082 -382 1471 243 0 0 chrY 5276294 5276599 -46236985 + AluSg SINE Alu 3 307 -3 1039 296 20 11 chrY 5276599 5276946 -46236638 + BSR/Beta Satellite Satellite 1082 1424 -40 980 291 27 16 chrY 5277023 5277823 -46235761 + BSR/Beta Satellite Satellite 1 809 -34 477 267 35 47 chrY 5277870 5278291 -46235293 + BSR/Beta Satellite Satellite 1 415 -3 569 282 18 19 chrY 5278303 5278704 -46234880 + BSR/Beta Satellite Satellite 1 400 -29 1053 283 9 6 chrY 5278770 5279092 -46234492 + BSR/Beta Satellite Satellite 41 363 -16 975 320 0 2 chrY 5279108 5279569 -46234015 + BSR/Beta Satellite Satellite 1 460 -47 494 282 26 14 chrY 5279627 5280608 -46232976 + BSR/Beta Satellite Satellite 1 993 0 792 294 43 27 chrY 5280703 5281002 -46232582 + BSR/Beta Satellite Satellite 27 330 -49 431 270 9 60 chrY 5281055 5281216 -46232368 + BSR/Beta Satellite Satellite 1 169 -1726 7119 55 0 1 chrY 5281216 5282461 -46231123 + L1PA4 LINE L1 4904 6147 -8 431 270 9 60 chrY 5282461 5283037 -46230547 + BSR/Beta Satellite Satellite 169 1880 -15 432 268 17 40 chrY 5283061 5283450 -46230134 + BSR/Beta Satellite Satellite 1 380 -42 920 285 10 18 chrY 5283798 5284691 -46228893 + BSR/Beta Satellite Satellite 1 885 -44 1002 286 9 10 chrY 5284788 5285370 -46228214 + BSR/Beta Satellite Satellite 1 581 -122 320 310 0 0 chrY 5285472 5285576 -46228008 + BSR/Beta Satellite Satellite 1 104 -43 671 289 17 18 chrY 5285626 5286704 -46226880 + BSR/Beta Satellite Satellite 1 1077 0 987 274 27 19 chrY 5286799 5287332 -46226252 + BSR/Beta Satellite Satellite 1 537 -12 330 240 115 0 chrY 5287353 5287449 -46226135 + AluSg/x SINE Alu 190 296 -4 290 329 11 30 chrY 5287451 5287650 -46225934 + BSR/Beta Satellite Satellite 1 195 -1 562 263 4 39 chrY 5287768 5288267 -46225317 + BSR/Beta Satellite Satellite 1 481 -10 356 354 29 0 chrY 5288475 5288658 -46224926 + BSR/Beta Satellite Satellite 1 188 -7 872 290 22 24 chrY 5288677 5289398 -46224186 + BSR/Beta Satellite Satellite 1 719 -9 240 347 21 0 chrY 5289485 5289580 -46224004 - BSR/Beta Satellite Satellite -16 136 40 576 264 20 30 chrY 5289670 5290150 -46223434 - BSR/Beta Satellite Satellite -4 475 1 457 236 26 17 chrY 5290187 5290356 -46223228 - BSR/Beta Satellite Satellite 0 170 1 304 315 5 0 chrY 5290422 5290572 -46223012 - BSR/Beta Satellite Satellite -23 150 1 15791 76 2 1 chrY 5290591 5293487 -46220097 - L1PA4 LINE L1 -3 6152 3254 10183 68 1 0 chrY 5293488 5294908 -46218676 + L1PA4 LINE L1 1849 3269 -2877 1123 282 8 14 chrY 5294908 5295561 -46218023 - BSR/Beta Satellite Satellite -49 649 1 423 263 11 56 chrY 5295585 5295788 -46217796 - BSR/Beta Satellite Satellite 0 193 1 974 316 17 5 chrY 5295846 5296826 -46216758 - BSR/Beta Satellite Satellite -8 992 1 566 255 19 24 chrY 5296903 5297663 -46215921 - BSR/Beta Satellite Satellite -47 756 1 288 326 35 0 chrY 5297763 5297907 -46215677 - BSR/Beta Satellite Satellite -3 149 1 * 1065 296 6 5 chrY 5297781 5298268 -46215316 - BSR/Beta Satellite Satellite -44 487 1 1034 268 38 6 chrY 5298288 5298601 -46214983 - BSR/Beta Satellite Satellite -16 363 41 1129 264 31 22 chrY 5298615 5299487 -46214097 - BSR/Beta Satellite Satellite -45 880 1 315 328 25 0 chrY 5299590 5299712 -46213872 - BSR/Beta Satellite Satellite -15 137 13 412 301 0 0 chrY 5299893 5300006 -46213578 - BSR/Beta Satellite Satellite -27 115 3 569 253 12 30 chrY 5300093 5300472 -46213112 - BSR/Beta Satellite Satellite 0 372 1 563 271 10 19 chrY 5300782 5301040 -46212544 - BSR/Beta Satellite Satellite -15 255 1 1103 294 0 7 chrY 5301108 5301418 -46212166 - BSR/Beta Satellite Satellite -51 328 21 936 268 22 23 chrY 5301538 5303282 -46210302 - BSR/Beta Satellite Satellite -2 1742 1 239 329 13 79 chrY 5303609 5303761 -46209823 - BSR/Beta Satellite Satellite 0 142 1 980 304 13 5 chrY 5303815 5304175 -46209409 - BSR/Beta Satellite Satellite -49 362 1 464 282 41 40 chrY 5304264 5305201 -46208383 - BSR/Beta Satellite Satellite 0 937 1 523 280 8 18 chrY 5305225 5305839 -46207745 - BSR/Beta Satellite Satellite 0 607 1 483 261 44 22 chrY 5306036 5306311 -46207273 - BSR/Beta Satellite Satellite 0 281 1 820 309 14 3 chrY 5306458 5306746 -46206838 - BSR/Beta Satellite Satellite -63 316 26 510 277 26 26 chrY 5306854 5307644 -46205940 - BSR/Beta Satellite Satellite -4 996 175 197 0 0 67 chrY 5307644 5307674 -46205910 + (TTTTG)n Simple_repeat Simple_repeat 2 29 0 510 277 26 26 chrY 5307674 5307850 -46205734 - BSR/Beta Satellite Satellite -825 175 1 364 299 8 8 chrY 5307937 5308064 -46205520 - BSR/Beta Satellite Satellite -14 128 2 621 322 54 0 chrY 5308170 5308412 -46205172 - BSR/Beta Satellite Satellite -122 257 3 899 327 3 9 chrY 5308430 5308763 -46204821 - BSR/Beta Satellite Satellite -16 363 33 603 234 16 19 chrY 5308833 5309172 -46204412 - BSR/Beta Satellite Satellite 0 337 1 1015 277 29 11 chrY 5309189 5309658 -46203926 - BSR/Beta Satellite Satellite -44 477 1 418 344 11 4 chrY 5309677 5309883 -46203701 - BSR/Beta Satellite Satellite -14 207 1 579 281 19 23 chrY 5309990 5310702 -46202882 - BSR/Beta Satellite Satellite 0 709 1 1129 290 28 22 chrY 5310753 5311491 -46202093 - BSR/Beta Satellite Satellite -25 742 1 478 274 27 25 chrY 5311582 5312617 -46200967 - BSR/Beta Satellite Satellite -5 1037 1 372 260 10 10 chrY 5312670 5312793 -46200791 - BSR/Beta Satellite Satellite -2 123 1 6686 151 5 9 chrY 5312793 5314774 -46198810 - L1PA6 LINE L1 -1 6153 4170 710 264 11 0 chrY 5314793 5314975 -46198609 - BSR/Beta Satellite Satellite -170 209 26 444 289 22 15 chrY 5315148 5315283 -46198301 - BSR/Beta Satellite Satellite -4 138 3 384 269 12 41 chrY 5315296 5315639 -46197945 - BSR/Beta Satellite Satellite 0 332 1 955 295 15 18 chrY 5315653 5317333 -46196251 - BSR/Beta Satellite Satellite -2 1676 1 357 279 85 27 chrY 5317343 5317637 -46195947 - L1 LINE L1 -1314 4832 4522 1525 215 7 3 chrY 5317665 5317958 -46195626 + AluSc SINE Alu 1 294 -15 893 326 101 38 chrY 5317983 5318590 -46194994 - L1M4c LINE L1 -3294 3088 2444 2680 186 25 12 chrY 5318673 5319265 -46194319 + LTR10E LTR ERV1 3 602 -31 238 359 14 9 chrY 5319274 5319486 -46194098 - L1M4c LINE L1 -4785 1599 1387 8521 51 0 4 chrY 5319517 5321371 -46192213 - L1PA4 LINE L1 -2 6153 4303 1713 205 0 0 chrY 5321851 5322149 -46191435 - AluSq SINE Alu -15 298 1 1143 269 33 13 chrY 5322325 5323603 -46189981 - BSR/Beta Satellite Satellite -44 1303 1 491 292 20 16 chrY 5323681 5323962 -46189622 - BSR/Beta Satellite Satellite 0 282 1 488 272 29 16 chrY 5323973 5324717 -46188867 - BSR/Beta Satellite Satellite 0 753 1 1217 282 32 1 chrY 5324827 5325525 -46188059 - BSR/Beta Satellite Satellite -13 719 1 298 282 32 8 chrY 5325623 5325800 -46187784 - BSR/Beta Satellite Satellite 0 181 1 873 297 10 12 chrY 5325829 5326219 -46187365 - BSR/Beta Satellite Satellite -44 892 503 254 28 0 28 chrY 5326219 5326255 -46187329 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 873 297 10 12 chrY 5326255 5326723 -46186861 - BSR/Beta Satellite Satellite -433 503 1 1066 287 14 8 chrY 5326746 5327972 -46185612 - BSR/Beta Satellite Satellite -45 1233 1 451 277 7 41 chrY 5328422 5329004 -46184580 - BSR/Beta Satellite Satellite 0 562 1 1024 305 5 14 chrY 5329144 5329883 -46183701 - BSR/Beta Satellite Satellite -51 732 1 546 280 48 15 chrY 5329978 5330936 -46182648 - BSR/Beta Satellite Satellite 0 989 1 905 324 4 3 chrY 5330975 5331445 -46182139 - BSR/Beta Satellite Satellite -44 470 1 827 254 36 61 chrY 5331462 5331557 -46182027 - BSR/Beta Satellite Satellite -16 363 267 1821 139 3 36 chrY 5331557 5331858 -46181726 + AluSc SINE Alu 11 301 -8 827 254 36 61 chrY 5331858 5332092 -46181492 - BSR/Beta Satellite Satellite -112 267 42 439 304 5 3 chrY 5332171 5332686 -46180898 - BSR/Beta Satellite Satellite -1 516 1 1645 199 3 3 chrY 5334638 5334929 -46178655 + AluSq SINE Alu 1 294 -19 255 93 0 0 chrY 5334929 5334972 -46178612 + (CATA)n Simple_repeat Simple_repeat 2 44 0 1645 199 3 3 chrY 5334972 5334987 -46178597 + AluSq SINE Alu 293 307 -6 2272 94 3 28 chrY 5335164 5335483 -46178101 + AluY SINE Alu 1 311 0 597 268 101 53 chrY 5335855 5336480 -46177104 + L1 LINE L1 2209 2867 -3279 1402 229 3 10 chrY 5336480 5336785 -46176799 - AluSc SINE Alu -6 303 1 597 268 101 53 chrY 5336785 5336804 -46176780 + L1 LINE L1 2867 2884 -3262 348 287 97 17 chrY 5336816 5337105 -46176479 + L1 LINE L1 4524 4835 -1311 836 282 43 8 chrY 5337111 5337582 -46176002 + BSR/Beta Satellite Satellite 1 454 -521 1717 173 0 14 chrY 5337582 5337860 -46175724 + AluSg SINE Alu 1 274 -36 836 282 43 8 chrY 5337860 5338042 -46175542 + BSR/Beta Satellite Satellite 454 962 -13 924 281 24 18 chrY 5338053 5338384 -46175200 + BSR/Beta Satellite Satellite 1 333 -46 617 271 11 30 chrY 5338447 5339635 -46173949 + BSR/Beta Satellite Satellite 1 1165 -30 1042 276 8 0 chrY 5339761 5340029 -46173555 + BSR/Beta Satellite Satellite 27 296 -83 336 293 35 17 chrY 5340097 5340321 -46173263 + BSR/Beta Satellite Satellite 1 228 0 555 260 10 27 chrY 5340504 5341009 -46172575 + BSR/Beta Satellite Satellite 1 496 -4 281 314 19 9 chrY 5341324 5341429 -46172155 + BSR/Beta Satellite Satellite 33 138 -14 1145 284 27 8 chrY 5341531 5342283 -46171301 + BSR/Beta Satellite Satellite 1 766 -34 968 274 11 31 chrY 5342354 5342980 -46170604 + BSR/Beta Satellite Satellite 1 613 -105 1607 166 4 4 chrY 5343031 5343290 -46170294 - AluSg SINE Alu -36 274 16 366 276 29 10 chrY 5343290 5343419 -46170165 - BSR/Beta Satellite Satellite -5 397 1 339 265 109 37 chrY 5343425 5343719 -46169865 - L1 LINE L1 -1311 4835 4521 540 254 113 62 chrY 5343727 5343746 -46169838 - L1 LINE L1 -3262 2884 2867 1391 228 10 16 chrY 5343746 5344053 -46169531 + AluSc SINE Alu 1 305 -4 540 254 113 62 chrY 5344053 5344676 -46168908 - L1 LINE L1 -3279 2867 2209 613 278 25 23 chrY 5344771 5345587 -46167997 + BSR/Beta Satellite Satellite 1 817 -50 956 309 27 9 chrY 5345601 5346383 -46167201 + BSR/Beta Satellite Satellite 1 795 -53 552 267 14 25 chrY 5346516 5347281 -46166303 + BSR/Beta Satellite Satellite 1 756 -42 1007 286 15 6 chrY 5347352 5347677 -46165907 + BSR/Beta Satellite Satellite 35 362 -17 903 288 17 2 chrY 5347698 5348146 -46165438 + BSR/Beta Satellite Satellite 1 454 -47 489 267 18 29 chrY 5348208 5349063 -46164521 + BSR/Beta Satellite Satellite 1 845 -8 335 307 34 8 chrY 5349080 5349279 -46164305 + BSR/Beta Satellite Satellite 1 204 0 1210 223 3 47 chrY 5349373 5349691 -46163893 + BSR/Beta Satellite Satellite 27 330 -49 264 325 58 8 chrY 5350016 5350136 -46163448 + BSR/Beta Satellite Satellite 12 137 -15 1226 265 31 0 chrY 5350239 5350564 -46163020 + BSR/Beta Satellite Satellite 1 335 -44 636 269 13 16 chrY 5350594 5351051 -46162533 + BSR/Beta Satellite Satellite 1 455 -41 706 309 40 13 chrY 5351144 5351442 -46162142 + BSR/Beta Satellite Satellite 58 363 -16 897 298 13 4 chrY 5351458 5351905 -46161679 + BSR/Beta Satellite Satellite 1 451 -55 496 235 32 44 chrY 5351962 5352295 -46161289 + BSR/Beta Satellite Satellite 1 329 -42 484 266 7 39 chrY 5352448 5353168 -46160416 + BSR/Beta Satellite Satellite 1 696 -38 352 346 12 6 chrY 5353313 5353572 -46160012 + BSR/Beta Satellite Satellite 1 260 -1 1165 253 14 17 chrY 5353595 5354357 -46159227 + BSR/Beta Satellite Satellite 1 760 -7 447 191 46 6 chrY 5354423 5354596 -46158988 + (TA)n Simple_repeat Simple_repeat 1 180 0 211 159 23 23 chrY 5354599 5354643 -46158941 + (TATATG)n Simple_repeat Simple_repeat 3 46 0 938 296 12 18 chrY 5354746 5355074 -46158510 + BSR/Beta Satellite Satellite 45 370 -9 566 356 12 3 chrY 5355091 5355411 -46158173 + BSR/Beta Satellite Satellite 9 331 -48 414 251 20 20 chrY 5355423 5355547 -46158037 + BSR/Beta Satellite Satellite 1 124 -43 597 287 17 14 chrY 5355623 5356641 -46156943 + BSR/Beta Satellite Satellite 1 1021 -60 900 290 22 19 chrY 5356807 5357121 -46156463 + BSR/Beta Satellite Satellite 38 352 -27 381 275 27 50 chrY 5357155 5357492 -46156092 + BSR/Beta Satellite Satellite 1 329 0 552 284 28 18 chrY 5357676 5358413 -46155171 + BSR/Beta Satellite Satellite 1 744 -51 292 366 21 0 chrY 5358462 5358604 -46154980 + BSR/Beta Satellite Satellite 2 146 -6 891 239 35 0 chrY 5358691 5358921 -46154663 + BSR/Beta Satellite Satellite 1 238 -141 612 269 14 28 chrY 5359031 5359807 -46153777 + BSR/Beta Satellite Satellite 1 765 -6 1007 286 31 9 chrY 5359903 5360228 -46153356 + BSR/Beta Satellite Satellite 21 352 -27 444 269 4 32 chrY 5360240 5360429 -46153155 + BSR/Beta Satellite Satellite 1 183 -27 36313 84 9 8 chrY 5360481 5366594 -46146990 - L1PA5 LINE L1 -12 6142 11 1384 270 90 10 chrY 5366605 5367596 -46145988 - L1M2 LINE L1 -736 5447 4400 1459 242 24 12 chrY 5367600 5368092 -46145492 + L1M2 LINE L1 3905 4402 -1744 1476 236 11 24 chrY 5368110 5368479 -46145105 + MER61B LTR ERV1 60 423 -2 414 165 51 0 chrY 5368498 5368577 -46145007 + MER61B-int LTR ERV1 19 101 -5116 1986 214 26 33 chrY 5368715 5369258 -46144326 + MER61B-int LTR ERV1 297 835 -4382 1370 144 31 8 chrY 5369268 5369524 -46144060 + MER61B-int LTR ERV1 952 1213 -4004 * 3896 173 24 14 chrY 5369519 5370433 -46143151 + MER61B-int LTR ERV1 1361 2283 -2934 2364 136 34 2 chrY 5370487 5370900 -46142684 + HERVL-A1 LTR ERVL 5229 5654 0 1840 201 14 3 chrY 5370900 5371254 -46142330 + MLT2A1 LTR ERVL 1 358 -86 198 71 0 0 chrY 5372141 5372169 -46141415 + (CAAAA)n Simple_repeat Simple_repeat 5 32 0 22 35 0 0 chrY 5372680 5372709 -46140875 + AT_rich Low_complexity Low_complexity 1 29 0 317 297 123 21 chrY 5372820 5373056 -46140528 + L1M4 LINE L1 2678 2937 -3209 761 347 84 34 chrY 5373205 5373791 -46139793 + L1M4 LINE L1 3132 3772 -2374 1265 203 153 24 chrY 5373791 5374170 -46139414 - MSTA LTR MaLR 0 428 1 761 347 84 34 chrY 5374170 5374402 -46139182 + L1M4 LINE L1 3772 3991 -2155 473 289 9 33 chrY 5374403 5374614 -46138970 + L1M4 LINE L1 4051 4256 -1890 442 243 19 0 chrY 5374782 5374889 -46138695 + MER2 DNA MER2_type 2 110 -235 1340 275 29 60 chrY 5375177 5375409 -46138175 + MER66B-int LTR ERV1 4548 4786 -2970 1908 176 0 0 chrY 5375409 5375704 -46137880 - AluSc SINE Alu -13 296 2 1340 275 29 60 chrY 5375704 5376596 -46136988 + MER66B-int LTR ERV1 4786 6189 -1567 1396 223 28 6 chrY 5376739 5377062 -46136522 + MER66B-int LTR ERV1 6347 6676 0 1244 222 92 58 chrY 5377062 5377530 -46136054 + MER66B LTR ERV1 1 484 -2 470 217 83 54 chrY 5377589 5377902 -46135682 + MER96B DNA MER1_type? 31 352 -65 1716 251 60 22 chrY 5377919 5378580 -46135004 - L1MC1 LINE L1 -22 6311 5588 348 243 66 52 chrY 5378603 5378739 -46134845 - L1MC1 LINE L1 -833 5511 5374 472 176 140 0 chrY 5378740 5378876 -46134708 + FRAM SINE Alu 21 175 -1 225 214 24 24 chrY 5378876 5378960 -46134624 + GA-rich Low_complexity Low_complexity 2 85 0 1164 220 12 4 chrY 5379055 5379296 -46134288 - AluSx SINE Alu -6 306 64 211 271 0 0 chrY 5379497 5379545 -46134039 + (TG)n Simple_repeat Simple_repeat 2 49 0 242 296 178 7 chrY 5379768 5379920 -46133664 - MIR SINE MIR -28 234 57 189 0 0 0 chrY 5380021 5380042 -46133542 + (A)n Simple_repeat Simple_repeat 1 21 0 7460 41 3 0 chrY 5380358 5382102 -46131482 + L1PA3 LINE L1 4466 6213 0 33 56 0 0 chrY 5382989 5383043 -46130541 + AT_rich Low_complexity Low_complexity 1 54 0 402 298 0 0 chrY 5384873 5384977 -46128607 + FLAM_C SINE Alu 3 106 -37 304 169 17 0 chrY 5384993 5385052 -46128532 - MER1B DNA MER1_type -13 326 267 1069 220 73 12 chrY 5385205 5385464 -46128120 - MER1B DNA MER1_type -64 275 1 23 0 0 0 chrY 5385487 5385510 -46128074 + AT_rich Low_complexity Low_complexity 1 23 0 722 211 46 59 chrY 5385571 5385808 -46127776 + AluJb SINE Alu 1 234 -78 4262 93 12 5 chrY 5385843 5386426 -46127158 - LTR14C LTR ERVK 0 587 1 14544 96 18 1 chrY 5386450 5388538 -46125046 - HERVK14C LTR ERVK -5 7412 5289 1012 95 0 7 chrY 5388530 5388678 -46124906 - HERVK14C LTR ERVK -4872 2545 2399 * 9830 127 8 1 chrY 5388663 5390205 -46123379 - HERVK14C LTR ERVK -5865 1552 1 4106 114 3 0 chrY 5390205 5390790 -46122794 - LTR14C LTR ERVK 0 587 1 262 200 31 0 chrY 5391268 5391333 -46122251 + (TA)n Simple_repeat Simple_repeat 2 68 0 317 163 0 0 chrY 5391333 5391382 -46122202 + LTR14C LTR ERVK 539 587 0 4404 153 16 28 chrY 5391699 5393104 -46120480 - pTR5 LTR ERV1 -29 2409 56 21 0 0 0 chrY 5396841 5396862 -46116722 + AT_rich Low_complexity Low_complexity 1 21 0 1661 166 0 0 chrY 5397246 5397511 -46116073 - AluSc SINE Alu -44 265 1 1951 117 3 49 chrY 5397827 5398135 -46115449 + AluY SINE Alu 5 298 -13 23 0 0 0 chrY 5398317 5398340 -46115244 + AT_rich Low_complexity Low_complexity 1 23 0 41689 43 22 2 chrY 5398340 5404357 -46109227 - L1PA2 LINE L1 -3 6152 13 857 279 27 44 chrY 5404634 5404931 -46108653 - AluJo SINE Alu -10 292 1 28 0 0 0 chrY 5405038 5405066 -46108518 + AT_rich Low_complexity Low_complexity 1 28 0 1271 248 22 3 chrY 5406400 5406718 -46106866 - L1MB5 LINE L1 -13 6161 5838 1193 224 106 22 chrY 5406755 5407161 -46106423 - L1MB5 LINE L1 -429 5745 5306 22 0 0 0 chrY 5407696 5407718 -46105866 + AT_rich Low_complexity Low_complexity 1 22 0 872 121 21 0 chrY 5408255 5408395 -46105189 + AluSp/q SINE Alu 171 313 0 1393 213 28 7 chrY 5409264 5409580 -46104004 - AluSg SINE Alu 0 310 3 1162 242 31 7 chrY 5410085 5410378 -46103206 + AluJb SINE Alu 3 302 0 495 264 64 7 chrY 5410650 5410790 -46102794 - MLT1A1 LTR MaLR -2 363 216 1858 139 7 3 chrY 5410791 5411078 -46102506 - AluSc SINE Alu 0 309 22 374 120 0 0 chrY 5411079 5411129 -46102455 - Alu SINE Alu -252 50 1 * 476 270 40 20 chrY 5411129 5411275 -46102309 - MLT1A1 LTR MaLR -141 224 76 681 278 43 36 chrY 5411277 5411579 -46102005 - LTR65-int LTR ERV1 -258 4678 4375 334 235 24 0 chrY 5411673 5411758 -46101826 - LTR65-int LTR ERV1 -721 4215 4129 1280 195 13 9 chrY 5411796 5411904 -46101680 - AluJb SINE Alu -80 232 126 186 43 0 0 chrY 5411904 5411927 -46101657 + (TTTG)n Simple_repeat Simple_repeat 1 23 0 1280 195 13 9 chrY 5411927 5412049 -46101535 - AluJb SINE Alu -186 126 1 1270 229 45 68 chrY 5412049 5412401 -46101183 - LTR65-int LTR ERV1 -805 4131 3791 2193 104 3 3 chrY 5412401 5412699 -46100885 + AluY SINE Alu 3 300 -11 1270 229 45 68 chrY 5412699 5412813 -46100771 - LTR65-int LTR ERV1 -1145 3791 3676 2087 131 23 0 chrY 5412914 5413219 -46100365 - AluSx SINE Alu 0 312 1 1884 250 55 39 chrY 5413350 5414311 -46099273 - LTR65-int LTR ERV1 -3647 1289 287 263 232 0 0 chrY 5414325 5414394 -46099190 + GA-rich Low_complexity Low_complexity 2 70 0 289 326 23 0 chrY 5415551 5415683 -46097901 - LTR65-int LTR ERV1 -4605 331 197 198 0 0 0 chrY 5416202 5416224 -46097360 + (A)n Simple_repeat Simple_repeat 1 22 0 180 0 0 0 chrY 5416508 5416528 -46097056 + (A)n Simple_repeat Simple_repeat 1 20 0 227 358 0 11 chrY 5416711 5416806 -46096778 + L1M3de LINE L1 277 370 -6283 2204 297 43 59 chrY 5417479 5418605 -46094979 + L1M3de LINE L1 286 2051 -4602 25 51 0 0 chrY 5418605 5418644 -46094940 + AT_rich Low_complexity Low_complexity 1 39 0 1842 158 3 3 chrY 5418646 5418950 -46094634 + AluSx SINE Alu 3 306 -6 1565 278 102 71 chrY 5418968 5419731 -46093853 + L1M2b LINE L1 2 788 -6421 882 267 17 75 chrY 5419751 5420167 -46093417 + L1M2b LINE L1 1553 1944 -5265 300 354 128 26 chrY 5420168 5420552 -46093032 - L1MEc LINE L1 -5918 478 56 1201 197 84 15 chrY 5420862 5421136 -46092448 - AluSx SINE Alu -18 294 2 1406 278 83 7 chrY 5421350 5421943 -46091641 - LTR65 LTR ERV1 -31 638 1 1258 201 31 31 chrY 5422532 5422821 -46090763 + AluSg SINE Alu 1 289 -21 777 232 0 24 chrY 5422900 5423064 -46090520 - FRAM SINE Alu -16 160 1 2193 111 0 3 chrY 5423648 5423946 -46089638 - AluY SINE Alu -14 297 1 229 302 16 0 chrY 5423957 5424020 -46089564 + L2 LINE L2 3231 3294 -19 240 35 0 0 chrY 5426011 5426040 -46087544 + (A)n Simple_repeat Simple_repeat 1 29 0 205 277 21 75 chrY 5426952 5427046 -46086538 + MIR SINE MIR 118 206 -56 455 295 7 0 chrY 5427126 5427265 -46086319 - MIR SINE MIR -25 237 98 1041 272 51 34 chrY 5428155 5428508 -46085076 - MLT1E LTR MaLR -2 591 233 1425 222 3 24 chrY 5428632 5428925 -46084659 + AluJo SINE Alu 7 293 -19 198 365 66 7 chrY 5428952 5429089 -46084495 - L2 LINE L2 -2531 783 639 25 51 0 0 chrY 5429089 5429128 -46084456 + AT_rich Low_complexity Low_complexity 1 39 0 266 380 32 16 chrY 5429178 5429365 -46084219 - L2 LINE L2 -2854 460 271 1227 276 49 18 chrY 5430031 5430477 -46083107 - MLT1C LTR MaLR 0 467 8 22 0 0 0 chrY 5430487 5430509 -46083075 + AT_rich Low_complexity Low_complexity 1 22 0 184 265 88 44 chrY 5431727 5431795 -46081789 + MIR3 SINE MIR 115 185 -23 2021 147 0 0 chrY 5431888 5432181 -46081403 + AluY SINE Alu 1 293 -18 25 110 0 0 chrY 5432192 5432301 -46081283 + AT_rich Low_complexity Low_complexity 1 109 0 28 0 0 0 chrY 5433060 5433088 -46080496 + AT_rich Low_complexity Low_complexity 1 28 0 1233 185 40 77 chrY 5433377 5433728 -46079856 + MLT1B LTR MaLR 1 338 -52 268 305 61 0 chrY 5434579 5434661 -46078923 + MIR SINE MIR 49 135 -127 401 283 25 8 chrY 5434833 5434953 -46078631 - MIR3 SINE MIR -21 187 66 190 193 57 91 chrY 5435728 5435816 -46077768 + L2 LINE L2 1550 1634 -1680 1790 149 20 3 chrY 5435995 5436296 -46077288 - AluSp SINE Alu -7 306 1 368 332 84 50 chrY 5436774 5437154 -46076430 + L2 LINE L2 2917 3309 -4 3188 160 32 0 chrY 5437260 5437822 -46075762 - LTR19B LTR ERV1 0 580 1 1222 144 0 34 chrY 5437841 5438049 -46075535 - HERVFH19I LTR ERV1 -20 7699 7499 * 2829 159 16 36 chrY 5438044 5438592 -46074992 - LTR19B-int LTR ERV1 -332 5254 4718 * 3066 115 9 26 chrY 5438591 5439250 -46074334 - LTR19B-int LTR ERV1 -489 6109 3889 207 0 0 0 chrY 5439250 5439273 -46074311 + (TTG)n Simple_repeat Simple_repeat 2 24 0 5778 21 0 0 chrY 5439273 5439935 -46073649 - L1PA3 LINE L1 -9 6146 5485 6540 30 0 6 chrY 5439935 5440740 -46072844 + L1P LINE L1 4595 5394 -752 2558 232 69 6 chrY 5440740 5441418 -46072166 - LTR19B-int LTR ERV1 -2098 3119 2399 806 239 18 18 chrY 5441406 5441678 -46071906 - LTR19B-int LTR ERV1 -3091 2126 1855 * 734 209 0 0 chrY 5441688 5441846 -46071738 - AluSc SINE Alu 0 305 148 24 0 0 0 chrY 5442374 5442398 -46071186 + AT_rich Low_complexity Low_complexity 1 24 0 5041 135 20 23 chrY 5443183 5444022 -46069562 - LTR19B-int LTR ERV1 -3621 1965 1129 3780 197 29 14 chrY 5444008 5444527 -46069057 - LTR19B-int LTR ERV1 -4665 921 307 * 306 50 0 0 chrY 5444527 5444567 -46069017 + (GA)n Simple_repeat Simple_repeat 2 41 0 3780 197 29 14 chrY 5444567 5444879 -46068705 - LTR19B-int LTR ERV1 -5279 307 1 1606 168 14 10 chrY 5444879 5445171 -46068413 - LTR19B LTR ERV1 0 580 288 2131 139 12 0 chrY 5445171 5445508 -46068076 - THE1B-int LTR MaLR -1239 341 1 240 88 0 0 chrY 5445508 5445542 -46068042 - THE1B LTR MaLR 0 364 331 42 77 0 0 chrY 5445778 5445869 -46067715 + AT_rich Low_complexity Low_complexity 1 91 0 917 302 97 38 chrY 5446164 5446585 -46066999 - MLT1J LTR MaLR -47 464 19 3723 176 38 47 chrY 5447688 5448674 -46064910 - MER11C LTR ERVK -4 1067 1 297 305 128 0 chrY 5448674 5448815 -46064769 + LTR67 LTR ERVL 391 549 -8 24 32 0 0 chrY 5448872 5448903 -46064681 + AT_rich Low_complexity Low_complexity 1 31 0 1636 141 35 28 chrY 5449305 5449595 -46063989 + AluSx SINE Alu 1 292 -20 23 0 0 0 chrY 5450592 5450615 -46062969 + AT_rich Low_complexity Low_complexity 1 23 0 298 254 76 0 chrY 5451072 5451190 -46062394 - L1M4 LINE L1 -1539 4607 4481 5756 113 18 18 chrY 5451795 5453149 -46060435 - L1PA7 LINE L1 -8 6146 4787 301 174 0 58 chrY 5453150 5453219 -46060365 + L1MC4 LINE L1 6641 6705 -1337 6719 141 32 3 chrY 5453277 5454424 -46059160 - L1PA7 LINE L1 -1350 4796 3616 1811 166 3 3 chrY 5454424 5454725 -46058859 - AluSx SINE Alu -6 306 6 511 110 0 0 chrY 5454912 5454985 -46058599 + AluYb8 SINE Alu 163 235 -83 1601 167 18 62 chrY 5455918 5456259 -46057325 + MER52C LTR ERV1 944 1269 -9 25 51 0 0 chrY 5456439 5456478 -46057106 + AT_rich Low_complexity Low_complexity 1 39 0 247 311 110 37 chrY 5457061 5457225 -46056359 - MIR SINE MIR -67 195 20 39522 77 7 2 chrY 5457488 5463610 -46049974 + L1PA4 LINE L1 1 6154 -1 374 354 107 28 chrY 5463704 5464199 -46049385 + L2 LINE L2 2427 2960 -354 558 257 7 14 chrY 5464260 5464400 -46049184 - MLT1D LTR MaLR -67 438 300 310 265 80 31 chrY 5464518 5464680 -46048904 - L1M4b LINE L1 -5324 1535 1366 15990 164 25 12 chrY 5465034 5465940 -46047644 - HERVK22 LTR ERVK -4004 2833 1940 2292 88 10 0 chrY 5465940 5466237 -46047347 - AluY SINE Alu -11 300 1 15990 164 25 12 chrY 5466237 5468083 -46045501 - HERVK22 LTR ERVK -4897 1940 45 3020 117 19 2 chrY 5468083 5468775 -46044809 - L1P2 LINE L1 -420 5734 5032 5192 121 70 0 chrY 5468786 5469558 -46044026 - LTR12 LTR ERV1 0 826 1 5082 113 13 8 chrY 5469558 5470319 -46043265 - HERV17 LTR ERV1 -11 8388 7621 1794 174 88 52 chrY 5470312 5471071 -46042513 - HERV17 LTR ERV1 -5156 1740 936 * 25357 126 30 21 chrY 5471057 5475867 -46037717 - HERV17 LTR ERV1 -3455 4944 1 5198 125 36 2 chrY 5475867 5476666 -46036918 - LTR12 LTR ERV1 0 826 1 724 148 0 0 chrY 5476667 5476782 -46036802 - L1P2 LINE L1 -1123 5023 4909 221 0 0 33 chrY 5477858 5477888 -46035696 + (TAAAA)n Simple_repeat Simple_repeat 2 30 0 23 0 0 0 chrY 5478429 5478452 -46035132 + AT_rich Low_complexity Low_complexity 1 23 0 21 71 0 0 chrY 5479773 5479815 -46033769 + AT_rich Low_complexity Low_complexity 1 42 0 32 0 0 0 chrY 5480064 5480096 -46033488 + AT_rich Low_complexity Low_complexity 1 32 0 317 0 0 65 chrY 5480193 5480239 -46033345 + (TTTTA)n Simple_repeat Simple_repeat 5 47 0 1480 212 11 0 chrY 5480244 5480527 -46033057 - AluSx SINE Alu -25 287 2 1984 109 27 0 chrY 5481155 5481449 -46032135 + AluY SINE Alu 10 311 0 2647 39 0 0 chrY 5481488 5481797 -46031787 - AluY SINE Alu -2 309 1 461 125 0 12 chrY 5484505 5484585 -46028999 + (TTCC)n Simple_repeat Simple_repeat 4 82 0 361 172 0 65 chrY 5485880 5485973 -46027611 + L1MA9 LINE L1 6078 6164 -148 22 0 0 0 chrY 5486128 5486150 -46027434 + AT_rich Low_complexity Low_complexity 1 22 0 7177 70 0 0 chrY 5486622 5488325 -46025259 + L1PA5 LINE L1 4439 6141 -13 1600 182 24 7 chrY 5488526 5488822 -46024762 - AluSq SINE Alu -12 301 1 22 0 0 0 chrY 5489187 5489209 -46024375 + AT_rich Low_complexity Low_complexity 1 22 0 2004 127 3 0 chrY 5489209 5489493 -46024091 + AluSc SINE Alu 1 285 -24 245 128 21 0 chrY 5489496 5489543 -46024041 + (TAA)n Simple_repeat Simple_repeat 2 49 0 341 275 29 54 chrY 5489710 5489921 -46023663 + L1ME LINE L1 5353 5556 -608 395 124 4 77 chrY 5490297 5490561 -46023023 + (TA)n Simple_repeat Simple_repeat 1 244 0 288 127 0 84 chrY 5490575 5490717 -46022867 + (TA)n Simple_repeat Simple_repeat 1 130 0 471 88 10 83 chrY 5490733 5490925 -46022659 + (TA)n Simple_repeat Simple_repeat 1 178 0 434 109 8 88 chrY 5491177 5491655 -46021929 + (TA)n Simple_repeat Simple_repeat 1 439 0 505 304 87 11 chrY 5491916 5492100 -46021484 - MIR SINE MIR -25 237 40 355 303 35 28 chrY 5492313 5492338 -46021246 + L1MDa LINE L1 2514 2537 -4003 3370 130 41 5 chrY 5492338 5492898 -46020686 + LTR19B LTR ERV1 1 580 0 355 303 35 28 chrY 5492898 5493189 -46020395 + L1MDa LINE L1 2537 2859 -3681 730 273 119 61 chrY 5493253 5493664 -46019920 + MLT2B1 LTR ERVL 5 439 -81 222 156 0 0 chrY 5493672 5493717 -46019867 + (TG)n Simple_repeat Simple_repeat 2 46 0 321 278 134 56 chrY 5495831 5496137 -46017447 + L2 LINE L2 2196 2525 -789 2670 42 0 3 chrY 5496336 5496648 -46016936 + AluY SINE Alu 1 311 0 299 301 55 35 chrY 5498087 5498343 -46015241 + L1M4 LINE L1 5257 5517 -657 24 0 0 0 chrY 5498462 5498486 -46015098 + AT_rich Low_complexity Low_complexity 1 24 0 30 0 0 0 chrY 5498625 5498655 -46014929 + AT_rich Low_complexity Low_complexity 1 30 0 22 35 0 0 chrY 5498748 5498777 -46014807 + AT_rich Low_complexity Low_complexity 1 29 0 27 29 0 0 chrY 5500396 5500430 -46013154 + AT_rich Low_complexity Low_complexity 1 34 0 25 51 0 0 chrY 5500572 5500611 -46012973 + AT_rich Low_complexity Low_complexity 1 39 0 21 0 0 0 chrY 5500717 5500738 -46012846 + AT_rich Low_complexity Low_complexity 1 21 0 3917 166 38 24 chrY 5500932 5501727 -46011857 + L1PA16 LINE L1 5359 6164 -2 21 0 0 0 chrY 5501727 5501748 -46011836 + AT_rich Low_complexity Low_complexity 1 21 0 594 235 0 0 chrY 5504209 5504328 -46009256 + MER41E LTR ERV1 1 119 -393 2261 159 53 127 chrY 5504711 5505446 -46008138 - LTR1 LTR ERV1 -104 681 1 252 231 39 0 chrY 5505621 5505673 -46007911 - LTR33A LTR ERVL -339 184 131 381 162 0 0 chrY 5505723 5505791 -46007793 + (CTA)n Simple_repeat Simple_repeat 1 68 0 2254 81 0 3 chrY 5505792 5506077 -46007507 - AluY SINE Alu -26 285 2 3296 84 0 2 chrY 5506447 5506897 -46006687 - L1PA5 LINE L1 -1795 4351 3903 7377 78 7 0 chrY 5506897 5508703 -46004881 + L1PA5 LINE L1 4354 6139 -15 526 252 0 0 chrY 5508854 5508969 -46004615 + MER41E LTR ERV1 1 115 -397 2689 163 25 94 chrY 5509338 5510085 -46003499 - LTR1 LTR ERV1 -89 696 1 260 231 65 145 chrY 5510257 5510443 -46003141 - LTR33A LTR ERVL -344 179 9 196 178 67 0 chrY 5510704 5510749 -46002835 - L2 LINE L2 -4 3309 3262 379 262 12 0 chrY 5511284 5511368 -46002216 - FRAM SINE Alu -13 153 69 186 43 0 0 chrY 5511404 5511427 -46002157 + (TTAA)n Simple_repeat Simple_repeat 2 24 0 541 162 10 10 chrY 5511438 5511537 -46002047 - FLAM_C SINE Alu -34 109 11 22 0 0 0 chrY 5513497 5513519 -46000065 + AT_rich Low_complexity Low_complexity 1 22 0 330 153 0 0 chrY 5513754 5513813 -45999771 + CT-rich Low_complexity Low_complexity 1 59 0 2051 123 3 0 chrY 5515047 5515364 -45998220 - L1PA6 LINE L1 0 6154 5837 635 121 10 0 chrY 5515365 5515464 -45998120 + L1P3 LINE L1 5433 5532 -622 271 300 64 21 chrY 5519654 5519794 -45993790 + MLT1F LTR MaLR 370 515 -27 1271 252 3 0 chrY 5520262 5520571 -45993013 + AluSx SINE Alu 1 310 -2 1416 194 0 31 chrY 5520622 5521049 -45992535 + AluSx SINE Alu 12 488 -48 510 17 0 0 chrY 5521049 5521108 -45992476 + (GAGAA)n Simple_repeat Simple_repeat 1 59 0 1416 194 0 31 chrY 5521108 5521156 -45992428 + AluSx SINE Alu 488 536 0 471 263 105 7 chrY 5521751 5521903 -45991681 - FRAM SINE Alu -9 167 1 252 325 8 26 chrY 5522021 5522138 -45991446 + MLT1E LTR MaLR 361 475 -118 274 176 20 0 chrY 5522180 5522231 -45991353 + L1MC/D LINE L1 5760 5811 -1997 238 301 19 0 chrY 5522227 5522280 -45991304 - L1P LINE L1 -2579 3567 3517 * 643 11 35 11 chrY 5522280 5522367 -45991217 + (TTTTA)n Simple_repeat Simple_repeat 2 90 0 238 301 19 0 chrY 5522367 5522416 -45991168 - L1P LINE L1 -2629 3517 3463 838 341 78 32 chrY 5523181 5523744 -45989840 - L1M3b LINE L1 -5675 606 18 1504 199 3 28 chrY 5523784 5524099 -45989485 + AluSg SINE Alu 1 308 0 240 306 18 36 chrY 5524200 5524311 -45989273 - L1M3de LINE L1 -5898 755 647 1455 211 58 50 chrY 5524322 5524738 -45988846 - MSTB LTR MaLR -7 419 1 386 346 59 72 chrY 5524768 5525074 -45988510 - L1M3de LINE L1 -5217 1436 1128 1925 157 0 3 chrY 5525074 5525373 -45988211 + AluSx SINE Alu 1 298 -14 386 346 59 72 chrY 5525373 5525656 -45987928 - L1M3de LINE L1 -5525 1128 605 24 32 0 0 chrY 5525902 5525933 -45987651 + AT_rich Low_complexity Low_complexity 1 31 0 305 192 55 0 chrY 5525933 5526006 -45987578 - L1MA4 LINE L1 -11 6289 6213 485 246 36 56 chrY 5526015 5526171 -45987413 + L1MA3 LINE L1 6019 6172 -133 1206 241 0 30 chrY 5526171 5526474 -45987110 + AluJo SINE Alu 2 295 -17 485 246 36 56 chrY 5526474 5526512 -45987072 + L1MA3 LINE L1 6172 6209 -96 1586 198 3 14 chrY 5526547 5526835 -45986749 - AluSx SINE Alu -25 287 3 1308 204 38 4 chrY 5527322 5527587 -45985997 + AluSg SINE Alu 15 288 -22 1158 226 109 19 chrY 5529509 5529941 -45983643 + L1MB5 LINE L1 5254 5746 -428 1079 255 68 9 chrY 5529967 5530292 -45983292 + L1MB5 LINE L1 5818 6161 -13 21 71 0 0 chrY 5530692 5530734 -45982850 + AT_rich Low_complexity Low_complexity 1 42 0 16222 64 20 0 chrY 5531387 5534249 -45979335 + L1PA4 LINE L1 3259 6152 -3 27 0 0 0 chrY 5534476 5534503 -45979081 + AT_rich Low_complexity Low_complexity 1 27 0 837 301 33 18 chrY 5534611 5534883 -45978701 + AluJo SINE Alu 1 276 -36 290 98 20 0 chrY 5536311 5536362 -45977222 + (TTTA)n Simple_repeat Simple_repeat 1 52 0 1629 170 4 4 chrY 5536362 5536638 -45976946 - AluSg SINE Alu -32 278 3 2040 142 0 0 chrY 5538651 5538954 -45974630 + AluSc SINE Alu 1 303 -6 1835 164 10 7 chrY 5539424 5539723 -45973861 - AluSc SINE Alu -9 300 1 26 30 0 0 chrY 5541006 5541039 -45972545 + AT_rich Low_complexity Low_complexity 1 33 0 21 57 0 0 chrY 5541485 5541520 -45972064 + AT_rich Low_complexity Low_complexity 1 35 0 816 254 27 9 chrY 5541588 5541812 -45971772 - AluJb SINE Alu -82 230 3 318 190 0 6 chrY 5542230 5542298 -45971286 + Charlie3 DNA MER1_type 2629 2699 -11 548 235 0 0 chrY 5542309 5542407 -45971177 - AluJ/FLAM SINE Alu -212 100 3 1636 179 7 3 chrY 5547441 5547726 -45965858 - AluSx SINE Alu -26 286 1 1685 177 7 36 chrY 5549503 5549595 -45963989 - AluSx SINE Alu -16 296 203 2533 45 7 3 chrY 5549595 5549903 -45963681 - AluY SINE Alu -2 309 1 1685 177 7 36 chrY 5549903 5550115 -45963469 - AluSx SINE Alu -109 203 1 1147 221 14 11 chrY 5550115 5550400 -45963184 - AluJo SINE Alu -14 298 13 868 264 23 63 chrY 5551343 5551734 -45961850 - L1M4 LINE L1 -421 5753 5381 22 0 0 0 chrY 5551812 5551834 -45961750 + AT_rich Low_complexity Low_complexity 1 22 0 252 263 23 58 chrY 5551942 5552113 -45961471 - L1MB2 LINE L1 -1 6170 6006 2907 136 0 7 chrY 5552184 5552610 -45960974 - L1PA8A LINE L1 -1 6130 5708 364 287 37 7 chrY 5552649 5552785 -45960799 - L1M4 LINE L1 -1968 4178 4039 1239 177 0 5 chrY 5552801 5552999 -45960585 - MER107 DNA MER1_type 0 197 1 311 247 139 25 chrY 5552999 5553157 -45960427 + L1M4 LINE L1 4965 5140 -1006 375 286 157 43 chrY 5553490 5553815 -45959769 + L1MDa LINE L1 2261 2622 -3918 348 286 24 0 chrY 5553896 5553980 -45959604 + L1MD2 LINE L1 6014 6099 -260 22 0 0 0 chrY 5554130 5554152 -45959432 + AT_rich Low_complexity Low_complexity 1 22 0 387 298 148 16 chrY 5554276 5554581 -45959003 + L1MC4a LINE L1 6276 6620 -1188 5451 200 14 5 chrY 5554645 5555754 -45957830 - L1P LINE L1 -1902 4244 3126 21 0 0 0 chrY 5555754 5555775 -45957809 + AT_rich Low_complexity Low_complexity 1 21 0 1274 174 60 23 chrY 5556176 5556475 -45957109 + L1P LINE L1 2755 3064 -3082 2811 164 14 116 chrY 5556475 5556861 -45956723 + LTR25 LTR ERV1 1 292 -502 198 0 0 0 chrY 5556861 5556883 -45956701 + (TTTA)n Simple_repeat Simple_repeat 2 23 0 2811 164 14 116 chrY 5556883 5557161 -45956423 + LTR25 LTR ERV1 292 597 -197 209 129 71 12 chrY 5557165 5557250 -45956334 + (TA)n Simple_repeat Simple_repeat 2 91 0 26 0 0 0 chrY 5557488 5557514 -45956070 + AT_rich Low_complexity Low_complexity 1 26 0 1603 159 0 8 chrY 5557900 5558157 -45955427 + AluSg SINE Alu 1 255 -55 862 244 35 18 chrY 5558256 5558591 -45954993 + L1MC1 LINE L1 4457 4800 -1346 2156 239 109 19 chrY 5558608 5559456 -45954128 + L1MC1 LINE L1 5333 6311 -22 332 234 72 48 chrY 5559473 5559640 -45953944 - MER96B DNA MER1_type? -65 352 182 1128 153 254 4 chrY 5559641 5559877 -45953707 - LTR12 LTR ERV1 -376 338 44 231 209 0 0 chrY 5559877 5559920 -45953664 - LTR30 LTR ERV1 -679 43 1 1456 284 23 37 chrY 5559928 5560837 -45952747 - MER61B-int LTR ERV1 -1567 6189 4894 2066 152 0 0 chrY 5560837 5561134 -45952450 + AluSc SINE Alu 1 297 -12 1456 284 23 37 chrY 5561134 5561422 -45952162 - MER61B-int LTR ERV1 -2862 4894 4604 545 215 19 0 chrY 5561659 5561766 -45951818 - MER2 DNA MER2_type -235 110 2 337 335 32 36 chrY 5561894 5562145 -45951439 - L1M4 LINE L1 -1846 4300 4051 403 165 35 12 chrY 5562374 5562459 -45951125 + MSTA LTR MaLR 3 89 -339 6291 133 137 116 chrY 5562459 5564120 -45949464 + pTR5 LTR ERV1 743 2438 0 1010 227 144 11 chrY 5564142 5564406 -45949178 + MSTA LTR MaLR 130 428 0 331 300 151 29 chrY 5564513 5565210 -45948374 - L1M4 LINE L1 -2509 3637 2856 35 24 0 0 chrY 5565218 5565260 -45948324 + AT_rich Low_complexity Low_complexity 1 42 0 675 82 0 31 chrY 5565283 5565381 -45948203 - L1PA4 LINE L1 -2 6153 6059 1354 65 0 0 chrY 5565381 5565551 -45948033 + L1PA4 LINE L1 5711 5880 -275 32 95 0 0 chrY 5566076 5566171 -45947413 + AT_rich Low_complexity Low_complexity 1 95 0 2071 82 0 4 chrY 5566299 5566566 -45947018 + AluY SINE Alu 23 288 -23 2146 160 17 3 chrY 5567531 5567887 -45945697 - MLT2A1 LTR ERVL -83 361 1 2837 116 12 16 chrY 5567887 5568317 -45945267 - HERVL-A1 LTR ERVL 0 5654 5227 1426 176 29 47 chrY 5568366 5568670 -45944914 - MER61B-int LTR ERV1 -2934 2283 1986 2378 67 17 0 chrY 5568670 5568968 -45944616 - AluY SINE Alu -8 303 1 1426 176 29 47 chrY 5568968 5569044 -45944540 - MER61B-int LTR ERV1 -3231 1986 1910 249 33 0 0 chrY 5569066 5569096 -45944488 + (GAAAA)n Simple_repeat Simple_repeat 4 33 0 504 256 0 16 chrY 5569113 5569234 -45944350 - MER61B-int LTR ERV1 -4819 398 280 591 150 47 63 chrY 5569295 5569422 -45944162 - MER61B-int LTR ERV1 -5074 143 19 724 262 21 5 chrY 5569439 5569556 -45944028 - MER61B LTR ERV1 0 425 302 183 42 0 0 chrY 5569556 5569580 -45944004 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 724 262 21 5 chrY 5569580 5569653 -45943931 - MER61B LTR ERV1 -123 302 232 30535 38 3 0 chrY 5569721 5574171 -45939413 - L1PA3 LINE L1 0 6155 1695 6095 72 1 1 chrY 5574190 5574993 -45938591 + L1PA3 LINE L1 900 1702 -4444 494 286 32 13 chrY 5574993 5575452 -45938132 - BSR/Beta Satellite Satellite -7 467 1 1296 266 16 9 chrY 5575465 5576120 -45937464 - BSR/Beta Satellite Satellite -44 659 1 596 269 21 34 chrY 5576410 5577136 -45936448 - BSR/Beta Satellite Satellite 0 716 1 2855 19 0 0 chrY 5577166 5577477 -45936107 - AluY SINE Alu 0 311 1 1006 260 33 57 chrY 5577740 5578375 -45935209 - BSR/Beta Satellite Satellite -21 619 1 525 285 22 23 chrY 5578495 5578880 -45934704 - BSR/Beta Satellite Satellite 0 384 1 580 267 21 36 chrY 5578892 5579537 -45934047 - BSR/Beta Satellite Satellite 0 635 1 461 316 0 0 chrY 5579604 5579729 -45933855 - BSR/Beta Satellite Satellite 0 125 1 860 327 6 9 chrY 5579744 5580068 -45933516 - BSR/Beta Satellite Satellite -48 331 9 934 282 6 58 chrY 5580085 5580429 -45933155 - BSR/Beta Satellite Satellite -9 370 45 268 253 35 23 chrY 5580443 5580530 -45933054 - BSR/Beta Satellite Satellite -46 96 9 519 138 52 17 chrY 5580552 5580726 -45932858 + (TA)n Simple_repeat Simple_repeat 1 180 0 1145 260 24 16 chrY 5580792 5581573 -45932011 - BSR/Beta Satellite Satellite -69 786 1 437 335 17 0 chrY 5581661 5581829 -45931755 - BSR/Beta Satellite Satellite -8 170 1 572 272 17 38 chrY 5581880 5582660 -45930924 - BSR/Beta Satellite Satellite -44 763 1 642 239 10 58 chrY 5582826 5583151 -45930433 - BSR/Beta Satellite Satellite 0 309 1 941 302 29 28 chrY 5583179 5584008 -45929576 - BSR/Beta Satellite Satellite -4 829 1 629 228 0 0 chrY 5584122 5584245 -45929339 - BSR/Beta Satellite Satellite -9 133 11 589 290 14 23 chrY 5584257 5584544 -45929040 - BSR/Beta Satellite Satellite 0 284 1 1216 281 25 0 chrY 5584580 5584907 -45928677 - BSR/Beta Satellite Satellite -44 335 1 303 352 16 8 chrY 5585012 5585137 -45928447 - BSR/Beta Satellite Satellite -15 137 12 238 278 35 7 chrY 5585208 5585289 -45928295 - BSR/Beta Satellite Satellite -68 148 1 1217 238 0 0 chrY 5585465 5585717 -45927867 - BSR/Beta Satellite Satellite -106 273 22 475 279 23 33 chrY 5585808 5586601 -45926983 - BSR/Beta Satellite Satellite -3 785 1 492 272 3 25 chrY 5586616 5586886 -45926698 - BSR/Beta Satellite Satellite 0 263 1 1095 300 28 3 chrY 5586958 5587765 -45925819 - BSR/Beta Satellite Satellite -16 827 1 720 261 26 36 chrY 5587840 5588605 -45924979 - BSR/Beta Satellite Satellite -18 757 1 1253 280 20 44 chrY 5588652 5589576 -45924008 - BSR/Beta Satellite Satellite -9 902 1 475 295 17 32 chrY 5589610 5590033 -45923551 - BSR/Beta Satellite Satellite 0 416 1 545 295 12 4 chrY 5590047 5590247 -45923337 - BSR/Beta Satellite Satellite -25 201 1 970 266 21 37 chrY 5590258 5590534 -45923050 - BSR/Beta Satellite Satellite -42 271 1 273 358 27 14 chrY 5590562 5590710 -45922874 - BSR/Beta Satellite Satellite -1 151 2 670 261 5 25 chrY 5590998 5591281 -45922303 - BSR/Beta Satellite Satellite 0 277 1 447 306 4 16 chrY 5591304 5591503 -45922081 - BSR/Beta Satellite Satellite -10 196 1 264 352 0 0 chrY 5591578 5591683 -45921901 - BSR/Beta Satellite Satellite -36 106 2 930 315 14 15 chrY 5591755 5592391 -45921193 - BSR/Beta Satellite Satellite -49 635 1 506 238 28 28 chrY 5592506 5592832 -45920752 - BSR/Beta Satellite Satellite -1 326 1 1149 270 17 36 chrY 5592843 5593246 -45920338 - BSR/Beta Satellite Satellite -1 2025 1616 1611 238 69 19 chrY 5593246 5593709 -45919875 + LTR22B LTR ERVK 5 490 -2 1149 270 17 36 chrY 5593709 5594907 -45918677 - BSR/Beta Satellite Satellite -410 1616 1 568 224 31 60 chrY 5594961 5595389 -45918195 - BSR/Beta Satellite Satellite 0 415 1 869 291 31 17 chrY 5595439 5595728 -45917856 - BSR/Beta Satellite Satellite -64 315 23 528 317 15 3 chrY 5595818 5596088 -45917496 - BSR/Beta Satellite Satellite -2 273 1 517 260 33 29 chrY 5596100 5596805 -45916779 - BSR/Beta Satellite Satellite 0 707 1 1153 300 15 4 chrY 5596934 5597713 -45915871 - BSR/Beta Satellite Satellite -9 787 1 1928 147 7 3 chrY 5597832 5598125 -45915459 + AluY SINE Alu 1 294 -17 1217 274 39 16 chrY 5598132 5598968 -45914616 - BSR/Beta Satellite Satellite -15 855 1 268 344 15 8 chrY 5599031 5599162 -45914422 - BSR/Beta Satellite Satellite -7 145 14 611 269 15 31 chrY 5599316 5600103 -45913481 - BSR/Beta Satellite Satellite -11 774 1 493 282 32 36 chrY 5600152 5600455 -45913129 - BSR/Beta Satellite Satellite -4 301 1 1255 264 31 12 chrY 5600481 5600818 -45912766 - BSR/Beta Satellite Satellite -49 343 1 944 278 19 20 chrY 5600909 5602491 -45911093 - BSR/Beta Satellite Satellite -46 1581 1 1209 268 16 26 chrY 5602507 5603742 -45909842 - BSR/Beta Satellite Satellite -4 1222 1 1665 160 7 29 chrY 5603806 5604087 -45909497 - AluSg SINE Alu -35 275 1 1169 283 5 7 chrY 5604109 5604888 -45908696 - BSR/Beta Satellite Satellite -1 777 1 446 284 24 10 chrY 5604968 5605200 -45908384 - BSR/Beta Satellite Satellite -11 235 1 1226 281 20 7 chrY 5605214 5605710 -45907874 - BSR/Beta Satellite Satellite -47 502 1 286 343 14 63 chrY 5605813 5605956 -45907628 - BSR/Beta Satellite Satellite -15 137 2 1126 298 12 21 chrY 5606097 5607625 -45905959 - BSR/Beta Satellite Satellite -58 1513 1 632 275 15 30 chrY 5607697 5608935 -45904649 - BSR/Beta Satellite Satellite -4 1219 1 1022 280 52 11 chrY 5608972 5609313 -45904271 - BSR/Beta Satellite Satellite -46 354 1 7004 87 2 0 chrY 5609313 5610544 -45903040 + L1PA6 LINE L1 4922 6154 0 664 296 0 0 chrY 5610612 5610781 -45902803 - BSR/Beta Satellite Satellite -13 366 198 1876 157 0 7 chrY 5610843 5611142 -45902442 - AluSg1 SINE Alu -4 305 9 425 266 24 8 chrY 5611153 5611277 -45902307 - BSR/Beta Satellite Satellite -219 160 35 589 262 9 14 chrY 5611347 5611620 -45901964 - BSR/Beta Satellite Satellite 0 271 1 668 279 74 17 chrY 5611626 5611924 -45901660 - L1 LINE L1 -1311 4835 4521 1110 209 5 5 chrY 5611953 5612173 -45901411 + AluSc SINE Alu 1 220 -89 667 266 96 53 chrY 5612205 5612375 -45901209 - L1M4c LINE L1 -3264 3118 2957 2534 57 0 10 chrY 5612375 5612689 -45900895 - AluY SINE Alu 0 311 1 667 266 96 53 chrY 5612689 5613164 -45900420 - L1M4c LINE L1 -3425 2957 2445 359 313 58 24 chrY 5613188 5613482 -45900102 - L1M4c LINE L1 -4723 1661 1358 238 209 0 0 chrY 5613877 5613920 -45899664 - L1M4c LINE L1 -5192 1121 1079 1640 193 24 0 chrY 5613966 5614439 -45899145 - AluSq SINE Alu 0 313 12 442 274 22 27 chrY 5616404 5616885 -45896699 + BSR/Beta Satellite Satellite 1 478 -51 652 284 29 83 chrY 5616953 5617211 -45896373 + BSR/Beta Satellite Satellite 29 265 -114 1498 172 21 31 chrY 5617211 5617501 -45896083 - AluY SINE Alu -14 297 11 652 284 29 83 chrY 5617501 5617591 -45895993 + BSR/Beta Satellite Satellite 265 358 -21 1088 273 25 17 chrY 5617611 5619143 -45894441 + BSR/Beta Satellite Satellite 1 1544 -14 1225 283 6 17 chrY 5619251 5619830 -45893754 + BSR/Beta Satellite Satellite 1 572 -43 475 277 56 27 chrY 5619885 5620138 -45893446 + BSR/Beta Satellite Satellite 1 245 -348 414 0 0 0 chrY 5620138 5620184 -45893400 + (TAAA)n Simple_repeat Simple_repeat 2 47 0 475 277 56 27 chrY 5620184 5620407 -45893177 + BSR/Beta Satellite Satellite 245 537 -56 1242 286 13 22 chrY 5620436 5621439 -45892145 + BSR/Beta Satellite Satellite 1 994 -50 1181 270 25 12 chrY 5621453 5621779 -45891805 + BSR/Beta Satellite Satellite 41 370 -9 730 346 4 4 chrY 5621797 5622241 -45891343 + BSR/Beta Satellite Satellite 1 444 -53 254 49 0 24 chrY 5622258 5622299 -45891285 + (CAAAAA)n Simple_repeat Simple_repeat 2 41 0 548 265 19 30 chrY 5622301 5622700 -45890884 + BSR/Beta Satellite Satellite 1 394 0 324 259 9 62 chrY 5622764 5622955 -45890629 + BSR/Beta Satellite Satellite 1 180 -5 1412 296 8 2 chrY 5623049 5623824 -45889760 + BSR/Beta Satellite Satellite 1 779 -3 593 269 22 19 chrY 5623912 5624962 -45888622 + BSR/Beta Satellite Satellite 1 1052 -7 1298 256 31 20 chrY 5625047 5625650 -45887934 + BSR/Beta Satellite Satellite 1 609 -53 311 370 16 0 chrY 5625917 5626044 -45887540 + BSR/Beta Satellite Satellite 10 138 -14 1656 185 4 0 chrY 5626080 5626356 -45887228 + AluJo SINE Alu 15 291 -21 493 253 16 55 chrY 5626418 5626600 -45886984 - L1MC4a LINE L1 -1941 5867 5693 1329 263 28 4 chrY 5626669 5627093 -45886491 + BSR/Beta Satellite Satellite 1 433 0 532 278 24 18 chrY 5627147 5627529 -45886055 + BSR/Beta Satellite Satellite 1 384 0 12165 55 0 1 chrY 5631212 5632712 -45880872 - L1PA4 LINE L1 -841 5305 3807 6943 60 1 0 chrY 5632712 5633539 -45880045 + L1PA4 LINE L1 5325 6153 -2 559 300 16 25 chrY 5636747 5637212 -45876372 + BSR/Beta Satellite Satellite 1 461 -43 1375 288 25 5 chrY 5637283 5637947 -45875637 + BSR/Beta Satellite Satellite 1 677 -47 631 256 39 24 chrY 5638120 5639165 -45874419 + BSR/Beta Satellite Satellite 1 1060 0 1147 269 19 34 chrY 5639255 5640738 -45872846 + BSR/Beta Satellite Satellite 1 1460 -37 299 355 18 0 chrY 5640883 5641046 -45872538 + BSR/Beta Satellite Satellite 1 165 -20 1227 237 26 8 chrY 5641151 5641591 -45871993 + BSR/Beta Satellite Satellite 1 447 -14 516 275 21 26 chrY 5641632 5642689 -45870895 + BSR/Beta Satellite Satellite 1 1051 -6 1082 293 26 20 chrY 5642786 5644394 -45869190 + BSR/Beta Satellite Satellite 1 1617 -51 259 336 32 8 chrY 5644425 5644550 -45869034 + BSR/Beta Satellite Satellite 22 149 -3 1235 259 26 2 chrY 5644672 5645097 -45868487 + BSR/Beta Satellite Satellite 1 435 0 451 285 13 14 chrY 5645109 5645490 -45868094 + BSR/Beta Satellite Satellite 1 380 -44 1132 287 9 6 chrY 5645555 5646240 -45867344 + BSR/Beta Satellite Satellite 1 686 -44 628 262 17 18 chrY 5646313 5647318 -45866266 + BSR/Beta Satellite Satellite 1 1003 -43 1126 286 8 16 chrY 5647449 5648066 -45865518 + BSR/Beta Satellite Satellite 1 612 -15 295 341 0 8 chrY 5648088 5648211 -45865373 + BSR/Beta Satellite Satellite 3 124 -18 491 271 5 23 chrY 5648353 5648974 -45864610 + BSR/Beta Satellite Satellite 1 609 -19 358 342 26 21 chrY 5649137 5649339 -45864245 + BSR/Beta Satellite Satellite 1 202 -7 1251 263 18 27 chrY 5649359 5649608 -45863976 + BSR/Beta Satellite Satellite 1 251 -905 2167 109 0 3 chrY 5649608 5649901 -45863683 + AluY SINE Alu 1 292 -19 1251 263 18 27 chrY 5649901 5650526 -45863058 + BSR/Beta Satellite Satellite 251 1156 0 901 303 12 11 chrY 5650561 5651479 -45862105 + BSR/Beta Satellite Satellite 1 918 0 228 281 26 61 chrY 5651491 5651605 -45861979 + BSR/Beta Satellite Satellite 33 142 0 321 310 21 17 chrY 5651617 5651788 -45861796 + BSR/Beta Satellite Satellite 1 171 -44 2292 48 3 3 chrY 5651795 5652084 -45861500 - L1PA4 LINE L1 -3 6152 5864 367 276 78 17 chrY 5652094 5652341 -45861243 + BSR/Beta Satellite Satellite 1 262 -7 1154 271 9 5 chrY 5652517 5653268 -45860316 + BSR/Beta Satellite Satellite 1 753 -47 384 274 0 0 chrY 5653357 5653461 -45860123 + BSR/Beta Satellite Satellite 1 104 -62 549 277 28 19 chrY 5653494 5654377 -45859207 + BSR/Beta Satellite Satellite 1 890 0 1244 261 13 0 chrY 5654465 5654768 -45858816 + BSR/Beta Satellite Satellite 19 325 -54 537 293 7 12 chrY 5654863 5655534 -45858050 + BSR/Beta Satellite Satellite 1 667 -15 657 226 11 71 chrY 5655565 5655922 -45857662 + BSR/Beta Satellite Satellite 1 335 -2 1184 296 19 11 chrY 5656137 5656862 -45856722 + BSR/Beta Satellite Satellite 1 730 -17 1666 188 7 10 chrY 5656871 5657169 -45856415 + AluSq SINE Alu 1 297 -16 627 263 14 15 chrY 5657202 5657579 -45856005 + BSR/Beta Satellite Satellite 1 376 0 870 303 9 19 chrY 5657618 5657942 -45855642 + BSR/Beta Satellite Satellite 43 363 -16 729 326 7 0 chrY 5657962 5658250 -45855334 + BSR/Beta Satellite Satellite 5 294 -85 400 275 35 0 chrY 5658298 5658415 -45855169 + BSR/Beta Satellite Satellite 1 121 -44 529 265 18 21 chrY 5658478 5659573 -45854011 + BSR/Beta Satellite Satellite 1 1091 -46 962 277 14 14 chrY 5659638 5659916 -45853668 + BSR/Beta Satellite Satellite 21 298 -81 334 302 25 25 chrY 5660000 5660177 -45853407 + BSR/Beta Satellite Satellite 1 177 -15 642 260 16 33 chrY 5660456 5661080 -45852504 + BSR/Beta Satellite Satellite 1 613 -19 902 311 16 5 chrY 5661234 5661661 -45851923 + BSR/Beta Satellite Satellite 1 432 -49 403 260 13 27 chrY 5661724 5661891 -45851693 + BSR/Beta Satellite Satellite 1 164 -21 1560 268 68 12 chrY 5661897 5662911 -45850673 - L1M3 LINE L1 -702 5481 4414 1477 244 27 10 chrY 5662930 5663418 -45850166 + L1M3 LINE L1 3905 4400 -1746 1526 236 57 17 chrY 5663588 5663875 -45849709 + MER61B LTR ERV1 1 310 -115 207 0 0 0 chrY 5663875 5663898 -45849686 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 1526 236 57 17 chrY 5663898 5664016 -45849568 + MER61B LTR ERV1 310 422 -3 527 140 61 35 chrY 5664027 5664141 -45849443 + MER61B-int LTR ERV1 14 130 -5087 2092 211 32 29 chrY 5664218 5664776 -45848808 + MER61B-int LTR ERV1 280 839 -4378 1407 160 11 0 chrY 5664777 5665039 -45848545 + MER61B-int LTR ERV1 944 1208 -4009 10011 158 25 13 chrY 5665046 5667099 -45846485 + MER61B-int LTR ERV1 1571 3522 -1695 4963 196 41 25 chrY 5667082 5668218 -45845366 + MER61B-int LTR ERV1 4060 5213 -4 * 2221 194 7 16 chrY 5668221 5668648 -45844936 + MER61B LTR ERV1 1 423 -2 283 298 133 0 chrY 5668657 5668845 -45844739 - L1 LINE L1 -1272 4874 4662 1344 234 4 0 chrY 5668887 5669148 -45844436 + AluJb SINE Alu 24 285 -27 232 286 60 43 chrY 5669331 5669516 -45844068 - L1 LINE L1 -3312 2834 2647 385 236 85 113 chrY 5669527 5670021 -45843563 - L1M4 LINE L1 -1308 3499 895 366 200 1 0 chrY 5670452 5670532 -45843052 - AluS SINE Alu -3 297 227 562 258 0 0 chrY 5670553 5670677 -45842907 - AluSq/x SINE Alu -180 133 10 1318 225 20 43 chrY 5671601 5671948 -45841636 - LTR32 LTR ERVL -21 450 112 23424 55 5 2 chrY 5671985 5675801 -45837783 - L1PA4 LINE L1 -2 6153 2327 1688 194 7 0 chrY 5675808 5676097 -45837487 - AluSp SINE Alu -22 291 1 306 276 38 48 chrY 5676110 5676215 -45837369 - LTR32 LTR ERVL -353 118 15 21 36 0 0 chrY 5676831 5676859 -45836725 + AT_rich Low_complexity Low_complexity 1 28 0 1905 167 6 13 chrY 5677473 5677785 -45835799 + AluY SINE Alu 1 310 -1 1539 183 38 7 chrY 5679737 5680027 -45833557 - AluSc SINE Alu -9 300 2 6356 246 174 2 chrY 5680067 5681776 -45831808 + L1PA12 LINE L1 1 2003 -5578 1314 305 24 0 chrY 5681782 5682159 -45831425 + L1PA13 LINE L1 347 732 -6055 1290 252 119 17 chrY 5682172 5682751 -45830833 + L1PA13 LINE L1 2517 3154 -3643 1907 177 3 0 chrY 5684509 5684819 -45828765 + AluSq SINE Alu 1 311 -2 236 167 0 56 chrY 5684881 5684935 -45828649 + L1M4c LINE L1 1079 1129 -5184 247 383 4 4 chrY 5685346 5685576 -45828008 + L1M4c LINE L1 1370 1599 -4785 2774 179 32 8 chrY 5685587 5686175 -45827409 - LTR10E LTR ERV1 -31 602 1 288 65 22 0 chrY 5686185 5686231 -45827353 + L1M2 LINE L1 2480 2526 -4323 390 314 91 35 chrY 5686257 5686859 -45826725 + L1M4c LINE L1 2445 3080 -3302 1500 221 7 3 chrY 5686883 5687182 -45826402 - AluSc SINE Alu -9 300 1 342 245 114 41 chrY 5687209 5687499 -45826085 + L1 LINE L1 4522 4832 -1314 1026 295 21 10 chrY 5687510 5688524 -45825060 + BSR/Beta Satellite Satellite 1 1025 -44 404 299 16 22 chrY 5688554 5688917 -45824667 + BSR/Beta Satellite Satellite 1 360 -8 2787 20 0 0 chrY 5688917 5689263 -45824321 - L1P LINE L1 -934 5212 4867 4878 23 2 0 chrY 5689263 5689829 -45823755 + L1PA2 LINE L1 5582 6150 -5 21 0 0 0 chrY 5689832 5689853 -45823731 + AT_rich Low_complexity Low_complexity 1 21 0 450 123 27 0 chrY 5689877 5689950 -45823634 + MLT1A1 LTR MaLR 243 317 -48 539 252 12 26 chrY 5689977 5690820 -45822764 + BSR/Beta Satellite Satellite 1 831 -53 796 254 0 0 chrY 5690961 5691150 -45822434 + BSR/Beta Satellite Satellite 21 209 -170 1908 135 56 5 chrY 5691169 5692919 -45820665 + L1PA7 LINE L1 4170 6153 -1 420 257 0 0 chrY 5692919 5693043 -45820541 + BSR/Beta Satellite Satellite 1 124 -47 289 331 23 15 chrY 5693096 5693226 -45820358 + BSR/Beta Satellite Satellite 4 134 -8 453 262 19 26 chrY 5693309 5693935 -45819649 + BSR/Beta Satellite Satellite 1 621 -15 430 227 37 0 chrY 5693984 5694137 -45819447 + BSR/Beta Satellite Satellite 1 158 0 1090 273 17 7 chrY 5694234 5694534 -45819050 + BSR/Beta Satellite Satellite 28 330 -49 474 286 32 20 chrY 5694603 5694979 -45818605 + BSR/Beta Satellite Satellite 1 380 -25 586 256 22 27 chrY 5695047 5695329 -45818255 + BSR/Beta Satellite Satellite 1 280 -1 398 278 16 40 chrY 5695343 5695517 -45818067 + BSR/Beta Satellite Satellite 1 169 -29 1154 277 21 24 chrY 5695543 5695879 -45817705 + BSR/Beta Satellite Satellite 29 363 -16 797 338 6 6 chrY 5695903 5696223 -45817361 + BSR/Beta Satellite Satellite 9 328 -51 329 264 28 76 chrY 5696259 5696403 -45817181 + BSR/Beta Satellite Satellite 2 138 -4 422 262 36 24 chrY 5696419 5696649 -45816935 + BSR/Beta Satellite Satellite 1 232 -53 621 287 19 10 chrY 5696699 5697468 -45816116 + BSR/Beta Satellite Satellite 1 776 0 897 296 46 7 chrY 5697575 5697859 -45815725 + BSR/Beta Satellite Satellite 36 330 -49 539 306 11 24 chrY 5697896 5698307 -45815277 + BSR/Beta Satellite Satellite 1 405 -20 496 313 5 13 chrY 5698375 5699066 -45814518 + BSR/Beta Satellite Satellite 1 685 -21 354 333 28 7 chrY 5699223 5699364 -45814220 + BSR/Beta Satellite Satellite 3 146 -6 1217 275 40 8 chrY 5699455 5700256 -45813328 + BSR/Beta Satellite Satellite 1 826 -44 1292 306 8 4 chrY 5700328 5701105 -45812479 + BSR/Beta Satellite Satellite 1 779 -1 555 277 31 18 chrY 5701189 5702254 -45811330 + BSR/Beta Satellite Satellite 1 1079 -43 1049 324 4 6 chrY 5702388 5702748 -45810836 + BSR/Beta Satellite Satellite 1 359 -54 347 319 36 19 chrY 5702821 5703013 -45810571 + BSR/Beta Satellite Satellite 1 195 0 526 251 5 18 chrY 5703255 5703406 -45810178 + BSR/Beta Satellite Satellite 1 148 -52 1013 302 26 9 chrY 5703430 5703903 -45809681 + BSR/Beta Satellite Satellite 1 481 -21 614 281 27 20 chrY 5703995 5705011 -45808573 + BSR/Beta Satellite Satellite 1 1023 0 1282 282 19 0 chrY 5705101 5705446 -45808138 + BSR/Beta Satellite Satellite 1 351 -64 407 290 15 38 chrY 5705547 5705678 -45807906 + BSR/Beta Satellite Satellite 15 142 0 247 330 34 5 chrY 5705755 5705953 -45807631 + BSR/Beta Satellite Satellite 1 203 -11 620 325 10 12 chrY 5706069 5707033 -45806551 + BSR/Beta Satellite Satellite 1 961 -7 1156 286 26 19 chrY 5707054 5707925 -45805659 + BSR/Beta Satellite Satellite 1 876 -63 924 294 44 9 chrY 5707940 5708260 -45805324 + BSR/Beta Satellite Satellite 41 371 -8 1021 303 18 10 chrY 5708273 5708808 -45804776 + BSR/Beta Satellite Satellite 1 539 -35 602 230 27 46 chrY 5708857 5709651 -45803933 + BSR/Beta Satellite Satellite 1 778 -42 1089 296 17 28 chrY 5709728 5710121 -45803463 + BSR/Beta Satellite Satellite 1 397 -1192 2810 10 0 0 chrY 5710121 5710426 -45803158 - AluY SINE Alu -6 305 1 1089 296 17 28 chrY 5710426 5711293 -45802291 + BSR/Beta Satellite Satellite 397 1548 -41 1051 299 10 20 chrY 5711321 5712096 -45801488 + BSR/Beta Satellite Satellite 1 767 -35 603 278 21 27 chrY 5712167 5712893 -45800691 + BSR/Beta Satellite Satellite 1 721 -64 284 280 20 30 chrY 5712959 5713059 -45800525 + BSR/Beta Satellite Satellite 258 356 -23 484 274 0 0 chrY 5713155 5713268 -45800316 - BSR/Beta Satellite Satellite -14 128 16 475 242 33 39 chrY 5713281 5713434 -45800150 - BSR/Beta Satellite Satellite 0 152 1 792 280 6 0 chrY 5713447 5713742 -45799842 - BSR/Beta Satellite Satellite -44 296 1 625 293 20 25 chrY 5713868 5714625 -45798959 - BSR/Beta Satellite Satellite -1 753 1 371 309 0 40 chrY 5714652 5714778 -45798806 - BSR/Beta Satellite Satellite -5 137 17 423 165 139 0 chrY 5714781 5714860 -45798724 - AluSg/x SINE Alu -12 298 209 626 298 57 22 chrY 5714996 5715312 -45798272 - BSR/Beta Satellite Satellite -27 352 26 628 272 17 27 chrY 5715413 5716675 -45796909 - BSR/Beta Satellite Satellite -1 1249 1 1189 305 7 5 chrY 5716743 5717350 -45796234 - BSR/Beta Satellite Satellite -10 608 1 198 0 0 0 chrY 5717440 5717462 -45796122 + (TTTA)n Simple_repeat Simple_repeat 3 24 0 27865 53 13 1 chrY 5717464 5721785 -45791799 - L1PA3 LINE L1 -9 6146 1776 392 319 0 0 chrY 5721788 5721904 -45791680 - BSR/Beta Satellite Satellite -14 128 13 5382 62 1 3 chrY 5721910 5722603 -45790981 + L1P LINE L1 1246 1937 -4209 1107 286 23 15 chrY 5722610 5723686 -45789898 - BSR/Beta Satellite Satellite -3 1084 1 486 288 20 34 chrY 5723846 5724563 -45789021 - BSR/Beta Satellite Satellite -1 706 1 505 310 15 25 chrY 5724621 5724987 -45788597 - BSR/Beta Satellite Satellite -4 362 1 758 320 40 0 chrY 5725045 5725323 -45788261 - BSR/Beta Satellite Satellite -50 329 41 582 285 30 12 chrY 5725433 5726399 -45787185 - BSR/Beta Satellite Satellite -2 983 1 1100 309 9 2 chrY 5726492 5726914 -45786670 - BSR/Beta Satellite Satellite -44 424 1 1252 259 22 12 chrY 5726934 5727254 -45786330 - BSR/Beta Satellite Satellite -16 363 41 1163 280 16 33 chrY 5727330 5729027 -45784557 - BSR/Beta Satellite Satellite -1 1668 1 577 255 24 25 chrY 5729062 5729440 -45784144 - BSR/Beta Satellite Satellite 0 622 10 1398 43 0 4 chrY 5729440 5729676 -45783908 + (TTC)n Simple_repeat Simple_repeat 1 235 0 1406 234 7 0 chrY 5729688 5729992 -45783592 - AluSg SINE Alu -2 308 3 889 299 38 12 chrY 5730001 5730480 -45783104 - BSR/Beta Satellite Satellite -44 491 1 323 380 21 0 chrY 5730576 5730718 -45782866 - BSR/Beta Satellite Satellite -7 145 1 477 264 38 25 chrY 5730862 5731235 -45782349 - BSR/Beta Satellite Satellite 0 377 1 507 267 11 32 chrY 5731254 5731471 -45782113 - BSR/Beta Satellite Satellite 0 212 1 281 358 22 0 chrY 5731518 5731655 -45781929 - BSR/Beta Satellite Satellite -2 140 1 1178 288 13 18 chrY 5731727 5732353 -45781231 - BSR/Beta Satellite Satellite -57 622 1 849 295 14 34 chrY 5732508 5734105 -45779479 - BSR/Beta Satellite Satellite -7 1564 1 637 271 14 25 chrY 5734269 5734852 -45778732 - BSR/Beta Satellite Satellite -3 576 1 1250 286 16 13 chrY 5735168 5735779 -45777805 - BSR/Beta Satellite Satellite -49 612 1 1091 288 11 27 chrY 5735907 5737456 -45776128 - BSR/Beta Satellite Satellite -44 1523 1 400 247 0 0 chrY 5737470 5737559 -45776025 - BSR/Beta Satellite Satellite -13 366 278 1771 170 7 3 chrY 5737568 5737862 -45775722 + AluY SINE Alu 1 295 -16 22 35 0 0 chrY 5737865 5737894 -45775690 + AT_rich Low_complexity Low_complexity 1 29 0 556 272 17 18 chrY 5737909 5738361 -45775223 - BSR/Beta Satellite Satellite 0 451 1 352 288 76 42 chrY 5738387 5738675 -45774909 - L1 LINE L1 -1332 4814 4517 684 194 16 8 chrY 5738692 5738821 -45774763 + AluSc SINE Alu 2 131 -178 5390 62 35 0 chrY 5738854 5739514 -45774070 - MER11D LTR ERVK 0 897 215 676 71 0 0 chrY 5739510 5739594 -45773990 - MER11D LTR ERVK -813 84 1 * 792 228 12 0 chrY 5739625 5739792 -45773792 + FRAM SINE Alu 1 40 0 331 297 62 0 chrY 5739796 5739941 -45773643 - L1 LINE L1 -3312 2834 2681 * 15132 78 8 17 chrY 5739938 5742045 -45771539 - L1P LINE L1 -1441 4705 2617 2666 239 82 36 chrY 5742042 5742980 -45770604 - L1PA13 LINE L1 -4396 2401 1417 * 333 415 34 8 chrY 5743003 5743268 -45770316 - L1PA13 LINE L1 -5529 1258 987 1412 306 76 4 chrY 5743355 5743815 -45769769 - L1PA13 LINE L1 -5956 831 339 * 5328 283 12 6 chrY 5743813 5745511 -45768073 - L1PA12 LINE L1 -5577 2004 20 28 0 0 0 chrY 5745531 5745559 -45768025 + AT_rich Low_complexity Low_complexity 1 28 0 22 56 0 0 chrY 5746139 5746175 -45767409 + AT_rich Low_complexity Low_complexity 1 36 0 1293 184 5 0 chrY 5746724 5746947 -45766637 + AluSq SINE Alu 4 227 -86 21 0 0 0 chrY 5747523 5747544 -45766040 + AT_rich Low_complexity Low_complexity 1 21 0 26 0 0 0 chrY 5747731 5747757 -45765827 + AT_rich Low_complexity Low_complexity 1 26 0 3539 132 4 6 chrY 5748931 5749440 -45764144 - MER9 LTR ERVK 0 511 4 1283 202 151 4 chrY 5750346 5750604 -45762980 + AluSp SINE Alu 1 296 -7 1479 227 20 40 chrY 5750608 5750961 -45762623 + LTR32 LTR ERVL 124 469 -2 3903 185 18 9 chrY 5751663 5752516 -45761068 - MER61-int LTR ERV1 -1061 3954 2349 582 301 29 43 chrY 5752518 5752794 -45760790 - BSR/Beta Satellite Satellite -81 298 27 584 280 8 22 chrY 5752886 5753964 -45759620 - BSR/Beta Satellite Satellite -1 1063 1 563 342 40 4 chrY 5754015 5754290 -45759294 - BSR/Beta Satellite Satellite -90 289 5 905 304 22 13 chrY 5754313 5754626 -45758958 - BSR/Beta Satellite Satellite -19 360 45 707 233 26 15 chrY 5754640 5755043 -45758541 - BSR/Beta Satellite Satellite -2 407 1 914 295 56 6 chrY 5755105 5755580 -45758004 - BSR/Beta Satellite Satellite 0 498 1 327 326 30 0 chrY 5755614 5755746 -45757838 - BSR/Beta Satellite Satellite -15 137 2 608 281 18 31 chrY 5755832 5756639 -45756945 - BSR/Beta Satellite Satellite 0 796 1 1311 277 14 16 chrY 5756722 5757420 -45756164 - BSR/Beta Satellite Satellite -49 696 1 537 281 24 21 chrY 5757515 5758598 -45754986 - BSR/Beta Satellite Satellite 0 1085 1 572 309 6 6 chrY 5758654 5758964 -45754620 - BSR/Beta Satellite Satellite -44 310 1 1065 298 16 2 chrY 5758987 5759336 -45754248 - BSR/Beta Satellite Satellite -5 353 1 652 236 19 61 chrY 5759363 5759945 -45753639 - BSR/Beta Satellite Satellite 0 557 1 517 297 4 0 chrY 5759958 5760122 -45753462 - BSR/Beta Satellite Satellite -3 164 1 1048 300 6 12 chrY 5760303 5760636 -45752948 - BSR/Beta Satellite Satellite -44 335 5 1093 250 36 32 chrY 5760652 5760960 -45752624 - BSR/Beta Satellite Satellite -13 366 58 469 255 45 34 chrY 5760993 5761364 -45752220 - BSR/Beta Satellite Satellite 0 374 1 1295 270 23 16 chrY 5761392 5761949 -45751635 - BSR/Beta Satellite Satellite -44 560 1 255 304 13 13 chrY 5762077 5762156 -45751428 - BSR/Beta Satellite Satellite -41 111 33 412 274 35 16 chrY 5762328 5762719 -45750865 - BSR/Beta Satellite Satellite -1 398 1 * 533 252 12 16 chrY 5762594 5762779 -45750805 - BSR/Beta Satellite Satellite 0 184 1 1037 259 36 19 chrY 5763080 5763774 -45749810 - BSR/Beta Satellite Satellite 0 705 1 452 288 20 16 chrY 5763819 5764055 -45749529 - BSR/Beta Satellite Satellite -2 236 1 1037 299 20 4 chrY 5764132 5764873 -45748711 - BSR/Beta Satellite Satellite -1 752 1 609 279 14 23 chrY 5764916 5765321 -45748263 - BSR/Beta Satellite Satellite -5 401 1 234 0 0 0 chrY 5765351 5765377 -45748207 + (TTA)n Simple_repeat Simple_repeat 2 27 0 14605 63 7 3 chrY 5765377 5767995 -45745589 - L1PA4 LINE L1 -22 6133 3509 1120 273 52 6 chrY 5769468 5769798 -45743786 - L1MB5 LINE L1 -13 6161 5817 1189 231 151 16 chrY 5769805 5770256 -45743328 - L1MB5 LINE L1 -415 5765 5254 272 312 16 24 chrY 5770282 5770407 -45743177 + L1M3d LINE L1 772 895 -5758 331 346 27 43 chrY 5770536 5770820 -45742764 + L1M3d LINE L1 372 659 -5994 1819 159 10 3 chrY 5770820 5771115 -45742469 - AluSx SINE Alu -15 297 1 331 346 27 43 chrY 5771115 5771159 -45742425 + L1M3d LINE L1 659 1436 -5217 226 305 48 72 chrY 5771189 5771356 -45742228 + L1M3de LINE L1 283 445 -6208 1573 227 39 53 chrY 5771447 5771878 -45741706 + MSTB LTR MaLR 1 425 -1 1570 189 0 23 chrY 5772106 5772407 -45741177 - AluSg SINE Alu -16 294 1 709 354 39 25 chrY 5772497 5772904 -45740680 + L1M3de LINE L1 438 850 -5813 378 61 0 0 chrY 5773884 5773933 -45739651 + (CA)n Simple_repeat Simple_repeat 2 50 0 211 50 75 0 chrY 5773935 5773975 -45739609 + (CAAA)n Simple_repeat Simple_repeat 2 44 0 287 283 11 22 chrY 5773985 5774077 -45739507 - MLT1E LTR MaLR -118 475 385 282 338 115 20 chrY 5774220 5774368 -45739216 + AluSc SINE Alu 135 296 -3 1019 89 17 17 chrY 5774968 5775102 -45738482 + (TTTC)n Simple_repeat Simple_repeat 1 314 0 1019 89 17 17 chrY 5775102 5775282 -45738302 + (TTTC)n Simple_repeat Simple_repeat 1 180 0 284 159 0 0 chrY 5775324 5775368 -45738216 + T-rich Low_complexity Low_complexity 1 44 0 1247 223 45 3 chrY 5775377 5775544 -45738040 - AluSx SINE Alu -9 303 118 375 41 0 0 chrY 5775544 5775593 -45737991 + (TG)n Simple_repeat Simple_repeat 2 50 0 1247 223 45 3 chrY 5775593 5775712 -45737872 - AluSx SINE Alu -194 118 5 1367 232 3 0 chrY 5775756 5776062 -45737522 - AluSx SINE Alu -1 311 5 279 280 64 24 chrY 5776534 5776659 -45736925 - MLT1C LTR MaLR -27 515 386 22 0 0 0 chrY 5777199 5777221 -45736363 + AT_rich Low_complexity Low_complexity 1 22 0 208 259 129 35 chrY 5779359 5779444 -45734140 + MIR3 SINE MIR 87 179 -29 809 78 0 0 chrY 5781845 5781948 -45731636 - L1P3 LINE L1 -622 5532 5430 2160 103 29 7 chrY 5781948 5782256 -45731328 + L1PA6 LINE L1 5837 6153 -1 2000 116 18 7 chrY 5783524 5783808 -45729776 - AluSq SINE Alu -26 287 1 358 111 0 0 chrY 5784595 5784649 -45728935 - AluSc SINE Alu -2 297 244 817 108 57 38 chrY 5784750 5784907 -45728677 + AluJb SINE Alu 32 191 -121 467 75 164 15 chrY 5784908 5784975 -45728609 + AluSg/x SINE Alu 77 153 -159 1971 97 0 30 chrY 5785001 5785268 -45728316 - AluSc SINE Alu -12 297 39 197 245 19 0 chrY 5785485 5785538 -45728046 - L2 LINE L2 -70 3243 3190 2164 114 3 0 chrY 5786647 5786936 -45726648 - AluSx SINE Alu -17 295 6 2203 125 3 0 chrY 5786947 5787250 -45726334 - AluSx SINE Alu -8 304 1 2232 106 3 3 chrY 5787261 5787564 -45726020 - AluSx SINE Alu -7 305 3 653 62 0 0 chrY 5787588 5787668 -45725916 - AluSg/x SINE Alu -12 298 219 344 359 33 22 chrY 5787800 5787984 -45725600 - L2 LINE L2 -2835 479 294 213 178 59 59 chrY 5788191 5788292 -45725292 + (TATATG)n Simple_repeat Simple_repeat 4 104 0 401 174 64 35 chrY 5788301 5788473 -45725111 + (TA)n Simple_repeat Simple_repeat 1 177 0 662 294 34 21 chrY 5788484 5788722 -45724862 - MLT1C LTR MaLR -192 275 35 207 0 0 0 chrY 5788723 5788746 -45724838 + (T)n Simple_repeat Simple_repeat 1 23 0 366 153 38 77 chrY 5789429 5789612 -45723972 + (CATATA)n Simple_repeat Simple_repeat 2 177 0 * 370 161 77 37 chrY 5789589 5789928 -45723656 + (TA)n Simple_repeat Simple_repeat 1 352 0 366 153 42 76 chrY 5789870 5790462 -45723122 + (CATATA)n Simple_repeat Simple_repeat 1 572 0 * 408 246 59 0 chrY 5790570 5790688 -45722896 - L1MC3 LINE L1 -1571 6214 6090 229 304 76 67 chrY 5842366 5842826 -45670758 + SST1 Satellite centromeric 138 601 -962 302 200 44 0 chrY 5843678 5843768 -45669816 + (TG)n Simple_repeat Simple_repeat 1 94 0 252 0 0 0 chrY 5843901 5843929 -45669655 + (TTTTG)n Simple_repeat Simple_repeat 2 29 0 276 30 0 0 chrY 5844003 5844036 -45669548 + (A)n Simple_repeat Simple_repeat 1 33 0 1617 236 17 12 chrY 5844474 5844880 -45668704 + LTR2 LTR ERV1 42 449 0 9232 196 27 18 chrY 5844880 5847160 -45666424 + Harlequin LTR ERV1 1 2384 -5429 * 10916 171 2 22 chrY 5847151 5849031 -45664553 + Harlequin LTR ERV1 2504 4344 -3469 3595 42 2 37 chrY 5849033 5849722 -45663862 - L1P1 LINE L1 -430 5725 5070 3879 49 0 0 chrY 5849722 5850189 -45663395 + L1PA2 LINE L1 5685 6154 -1 16214 229 7 5 chrY 5850194 5853565 -45660019 + Harlequin LTR ERV1 4350 7811 -2 1496 246 57 24 chrY 5853565 5853766 -45659818 + LTR2 LTR ERV1 1 194 -255 351 0 0 0 chrY 5853766 5853805 -45659779 + (TTCTG)n Simple_repeat Simple_repeat 2 40 0 1496 246 57 24 chrY 5853805 5854026 -45659558 + LTR2 LTR ERV1 194 437 -12 417 314 65 57 chrY 5854286 5854745 -45658839 + SST1 Satellite centromeric 132 594 -969 195 69 0 0 chrY 5855689 5855718 -45657866 + (TG)n Simple_repeat Simple_repeat 2 30 0 318 324 67 57 chrY 5856762 5857222 -45656362 + SST1 Satellite centromeric 138 602 -961 183 217 0 0 chrY 5858127 5858187 -45655397 + (TG)n Simple_repeat Simple_repeat 1 60 0 270 106 0 0 chrY 5860632 5860679 -45652905 + (TTTA)n Simple_repeat Simple_repeat 2 48 0 281 39 0 77 chrY 5863033 5863085 -45650499 + (TG)n Simple_repeat Simple_repeat 1 48 0 296 241 12 0 chrY 5864504 5864587 -45648997 + (TG)n Simple_repeat Simple_repeat 1 84 0 24 0 0 0 chrY 5865084 5865108 -45648476 + AT_rich Low_complexity Low_complexity 1 24 0 388 303 72 55 chrY 5865648 5866103 -45647481 + SST1 Satellite centromeric 138 600 -963 600 14 0 0 chrY 5867107 5867176 -45646408 + (TTC)n Simple_repeat Simple_repeat 2 70 0 283 298 71 58 chrY 5868248 5868543 -45645041 + SST1 Satellite centromeric 207 505 -1058 216 0 0 0 chrY 5869673 5869697 -45643887 + (A)n Simple_repeat Simple_repeat 1 24 0 397 297 108 61 chrY 5870503 5870947 -45642637 + SST1 Satellite centromeric 137 601 -962 230 276 0 0 chrY 5871439 5871497 -45642087 + SST1 Satellite centromeric 1163 1220 -343 195 69 0 0 chrY 5871876 5871905 -45641679 + (TG)n Simple_repeat Simple_repeat 1 29 0 264 332 64 62 chrY 5873451 5873824 -45639760 + SST1 Satellite centromeric 1165 1538 -25 180 77 0 0 chrY 5873883 5873909 -45639675 + (TG)n Simple_repeat Simple_repeat 1 26 0 274 320 70 59 chrY 5874907 5875435 -45638149 + SST1 Satellite centromeric 62 595 -968 252 59 0 0 chrY 5876375 5876409 -45637175 + (TG)n Simple_repeat Simple_repeat 1 34 0 372 299 59 67 chrY 5877556 5877944 -45635640 + SST1 Satellite centromeric 227 611 -952 243 240 13 0 chrY 5883082 5883157 -45630427 + (TG)n Simple_repeat Simple_repeat 1 76 0 328 313 76 47 chrY 5884284 5884667 -45628917 + SST1 Satellite centromeric 207 600 -963 336 316 84 71 chrY 5885154 5885546 -45628038 + SST1 Satellite centromeric 1163 1559 -4 212 0 36 0 chrY 5885836 5885864 -45627720 + (CAAA)n Simple_repeat Simple_repeat 2 30 0 234 250 12 12 chrY 5887536 5887620 -45625964 + (TG)n Simple_repeat Simple_repeat 1 84 0 257 339 59 51 chrY 5888762 5889137 -45624447 + SST1 Satellite centromeric 224 601 -962 303 113 0 0 chrY 5890067 5890120 -45623464 + (TG)n Simple_repeat Simple_repeat 2 54 0 295 289 0 0 chrY 5892125 5892201 -45621383 + SST1 Satellite centromeric 1163 1238 -325 249 167 0 0 chrY 5892826 5892880 -45620704 + A-rich Low_complexity Low_complexity 1 54 0 233 321 44 44 chrY 5893874 5894123 -45619461 + SST1 Satellite centromeric 352 600 -963 269 94 0 62 chrY 5895036 5895100 -45618484 + (TG)n Simple_repeat Simple_repeat 1 60 0 236 213 27 0 chrY 5897467 5897542 -45616042 + (TG)n Simple_repeat Simple_repeat 1 77 0 208 279 0 0 chrY 5899927 5899995 -45613589 + (TG)n Simple_repeat Simple_repeat 1 68 0 321 26 0 0 chrY 5900033 5900071 -45613513 + (TTTA)n Simple_repeat Simple_repeat 2 39 0 234 0 0 0 chrY 5902705 5902731 -45610853 + (A)n Simple_repeat Simple_repeat 1 26 0 237 294 32 40 chrY 5903566 5903692 -45609892 + SST1 Satellite centromeric 138 262 -1301 264 130 0 0 chrY 5904957 5905003 -45608581 + (TG)n Simple_repeat Simple_repeat 1 46 0 264 314 72 55 chrY 5905752 5906099 -45607485 + SST1 Satellite centromeric 138 490 -1073 309 278 76 28 chrY 5906365 5906509 -45607075 + SST1 Satellite centromeric 1386 1536 -27 419 35 18 0 chrY 5906558 5906615 -45606969 + (TG)n Simple_repeat Simple_repeat 1 58 0 423 0 0 0 chrY 5906835 5906882 -45606702 + (TAAA)n Simple_repeat Simple_repeat 2 48 0 245 264 47 62 chrY 5907341 5907534 -45606050 + SST1 Satellite centromeric 412 601 -962 240 342 13 0 chrY 5908039 5908118 -45605466 + SST1 Satellite centromeric 1148 1227 -336 198 0 0 0 chrY 5908462 5908484 -45605100 + (TG)n Simple_repeat Simple_repeat 1 22 0 216 0 0 0 chrY 5908706 5908730 -45604854 + (A)n Simple_repeat Simple_repeat 1 24 0 264 313 81 63 chrY 5909581 5910038 -45603546 + SST1 Satellite centromeric 138 602 -961 279 295 0 0 chrY 5910529 5910607 -45602977 + SST1 Satellite centromeric 1162 1239 -324 234 178 41 14 chrY 5910906 5910979 -45602605 + (TG)n Simple_repeat Simple_repeat 2 76 0 198 0 0 0 chrY 5911190 5911212 -45602372 + (A)n Simple_repeat Simple_repeat 1 22 0 180 167 0 0 chrY 5911858 5911906 -45601678 + (TG)n Simple_repeat Simple_repeat 1 48 0 241 313 30 30 chrY 5912958 5913089 -45600495 + SST1 Satellite centromeric 132 262 -1301 216 259 12 12 chrY 5914291 5914376 -45599208 + (TG)n Simple_repeat Simple_repeat 2 86 0 561 326 57 42 chrY 5915335 5915900 -45597684 + SST1 Satellite centromeric 29 601 -962 185 153 0 17 chrY 5916799 5916858 -45596726 + (TG)n Simple_repeat Simple_repeat 2 59 0 2346 65 3 0 chrY 5920032 5920339 -45593245 - AluY SINE Alu -3 308 1 21 0 0 0 chrY 5920568 5920589 -45592995 + AT_rich Low_complexity Low_complexity 1 21 0 415 297 62 56 chrY 5920690 5921010 -45592574 + SST1 Satellite centromeric 314 635 -928 724 12 105 0 chrY 5921674 5921836 -45591748 + (TA)n Simple_repeat Simple_repeat 2 180 0 309 247 41 55 chrY 5921847 5921993 -45591591 + L1MCa LINE L1 1948 2091 -4335 * 333 219 65 116 chrY 5921877 5922169 -45591415 - L1MC5 LINE L1 -209 7752 7476 489 319 46 40 chrY 5923484 5923857 -45589727 + SST1 Satellite centromeric 227 601 -962 257 235 24 0 chrY 5927190 5927275 -45586309 + (TG)n Simple_repeat Simple_repeat 2 88 0 195 152 0 0 chrY 5929689 5929735 -45583849 + (TG)n Simple_repeat Simple_repeat 1 46 0 212 241 0 0 chrY 5932042 5932096 -45581488 + (TG)n Simple_repeat Simple_repeat 1 54 0 224 137 20 0 chrY 5933734 5933785 -45579799 + (TG)n Simple_repeat Simple_repeat 1 52 0 234 265 42 54 chrY 5934785 5934951 -45578633 + SST1 Satellite centromeric 111 274 -1289 248 271 21 0 chrY 5936147 5936243 -45577341 + (TG)n Simple_repeat Simple_repeat 1 98 0 451 342 50 25 chrY 5937185 5937744 -45575840 + SST1 Satellite centromeric 29 601 -962 279 130 0 0 chrY 5938639 5938693 -45574891 + (TG)n Simple_repeat Simple_repeat 1 54 0 226 230 0 14 chrY 5939437 5939511 -45574073 + (TG)n Simple_repeat Simple_repeat 1 73 0 189 107 0 0 chrY 5939552 5939580 -45574004 + (T)n Simple_repeat Simple_repeat 1 28 0 476 294 61 56 chrY 5940576 5941038 -45572546 + SST1 Satellite centromeric 138 601 -962 237 238 24 0 chrY 5941950 5942034 -45571550 + (TG)n Simple_repeat Simple_repeat 1 86 0 1148 84 4 14 chrY 5942072 5942361 -45571223 + (TTC)n Simple_repeat Simple_repeat 1 285 0 180 0 0 0 chrY 5942433 5942453 -45571131 + (TTTG)n Simple_repeat Simple_repeat 2 21 0 412 287 65 67 chrY 5943457 5943844 -45569740 + SST1 Satellite centromeric 227 612 -951 354 74 0 0 chrY 5944742 5944796 -45568788 + (TG)n Simple_repeat Simple_repeat 1 54 0 233 303 37 46 chrY 5946787 5946896 -45566688 + SST1 Satellite centromeric 1132 1239 -324 211 265 20 0 chrY 5947091 5947189 -45566395 + (TG)n Simple_repeat Simple_repeat 1 100 0 314 309 65 52 chrY 5948349 5948718 -45564866 + SST1 Satellite centromeric 227 600 -963 201 154 0 0 chrY 5949218 5949257 -45564327 + (TG)n Simple_repeat Simple_repeat 2 40 0 248 309 48 39 chrY 5950553 5950783 -45562801 + SST1 Satellite centromeric 370 601 -962 22 0 0 0 chrY 5951933 5951955 -45561629 + AT_rich Low_complexity Low_complexity 1 22 0 381 315 55 39 chrY 5952802 5953259 -45560325 + SST1 Satellite centromeric 138 601 -962 184 75 25 25 chrY 5954168 5954208 -45559376 + (TG)n Simple_repeat Simple_repeat 1 40 0 1702 244 13 33 chrY 5954817 5955275 -45558309 + LTR2 LTR ERV1 1 449 0 6954 193 47 13 chrY 5955275 5956948 -45556636 + Harlequin LTR ERV1 1 1806 -6007 * 20908 221 6 9 chrY 5956947 5961086 -45552498 + HERVE LTR ERV1 3681 7808 -5 1745 230 36 25 chrY 5961089 5961533 -45552051 + LTR2 LTR ERV1 1 449 0 270 303 68 64 chrY 5962216 5962467 -45551117 + SST1 Satellite centromeric 349 600 -963 240 268 24 0 chrY 5963311 5963393 -45550191 + (TG)n Simple_repeat Simple_repeat 1 84 0 249 108 0 0 chrY 5963589 5963626 -45549958 + (A)n Simple_repeat Simple_repeat 1 37 0 287 24 0 24 chrY 5963651 5963692 -45549892 + (CA)n Simple_repeat Simple_repeat 1 40 0 198 103 0 0 chrY 5964793 5964822 -45548762 + (TTTTC)n Simple_repeat Simple_repeat 1 29 0 1679 159 0 17 chrY 5965754 5966117 -45547467 - AluY SINE Alu 0 358 1 238 254 58 72 chrY 5966201 5966339 -45547245 + SST1 Satellite centromeric 131 266 -1297 248 224 0 0 chrY 5967576 5967634 -45545950 + (TG)n Simple_repeat Simple_repeat 1 58 0 280 312 78 73 chrY 5968478 5968875 -45544709 + SST1 Satellite centromeric 1132 1530 -33 390 279 64 54 chrY 5970071 5970462 -45543122 + SST1 Satellite centromeric 207 601 -962 237 98 0 0 chrY 5971360 5971401 -45542183 + (TG)n Simple_repeat Simple_repeat 1 41 0 264 290 77 82 chrY 5972470 5972936 -45540648 + SST1 Satellite centromeric 138 601 -962 226 340 78 7 chrY 5973658 5973799 -45539785 + SST1 Satellite centromeric 1386 1536 -27 303 49 0 0 chrY 5973874 5973915 -45539669 + (TG)n Simple_repeat Simple_repeat 2 42 0 273 57 0 0 chrY 5975672 5975707 -45537877 + (TG)n Simple_repeat Simple_repeat 2 36 0 180 77 0 0 chrY 5975756 5975782 -45537802 + (T)n Simple_repeat Simple_repeat 1 26 0 279 0 0 0 chrY 5975982 5976013 -45537571 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 216 86 0 0 chrY 5978191 5978226 -45535358 + (TG)n Simple_repeat Simple_repeat 2 36 0 250 312 96 25 chrY 5980451 5980608 -45532976 + SST1 Satellite centromeric 1373 1540 -23 273 145 0 0 chrY 5980641 5980703 -45532881 + (TG)n Simple_repeat Simple_repeat 1 62 0 22 0 0 0 chrY 5980756 5980778 -45532806 + AT_rich Low_complexity Low_complexity 1 22 0 207 0 0 0 chrY 5980902 5980925 -45532659 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 269 337 55 41 chrY 5981732 5982221 -45531363 + SST1 Satellite centromeric 105 600 -963 202 71 24 24 chrY 5983113 5983155 -45530429 + (TG)n Simple_repeat Simple_repeat 1 42 0 231 265 41 68 chrY 5984200 5984347 -45529237 + SST1 Satellite centromeric 132 274 -1289 278 247 21 0 chrY 5985069 5985166 -45528418 + (CA)n Simple_repeat Simple_repeat 2 100 0 252 0 0 0 chrY 5987158 5987186 -45526398 + (TTTTTG)n Simple_repeat Simple_repeat 3 30 0 284 306 35 40 chrY 5988315 5988488 -45525096 - SST1 Satellite centromeric -962 601 430 207 0 0 0 chrY 5989591 5989614 -45523970 + (T)n Simple_repeat Simple_repeat 1 23 0 220 186 0 0 chrY 5989816 5989859 -45523725 + (CA)n Simple_repeat Simple_repeat 2 44 0 328 323 52 39 chrY 5989928 5990334 -45523250 - SST1 Satellite centromeric -962 601 191 198 0 0 0 chrY 5991215 5991237 -45522347 + (TTTA)n Simple_repeat Simple_repeat 2 23 0 209 196 0 0 chrY 5991462 5991508 -45522076 + (CA)n Simple_repeat Simple_repeat 1 46 0 180 97 0 0 chrY 5993930 5993961 -45519623 + (CA)n Simple_repeat Simple_repeat 2 32 0 307 277 89 75 chrY 5994887 5995179 -45518405 - SST1 Satellite centromeric -1039 524 229 270 0 0 0 chrY 5996104 5996134 -45517450 + (TTTTTG)n Simple_repeat Simple_repeat 1 30 0 280 253 10 10 chrY 5996330 5996429 -45517155 + (CA)n Simple_repeat Simple_repeat 1 99 0 1700 152 0 3 chrY 5996533 5996865 -45516719 - AluY SINE Alu 0 331 1 1205 7 0 0 chrY 5996872 5997007 -45516577 - AluYa5 SINE Alu -13 298 164 291 242 0 0 chrY 5997223 5997285 -45516299 - SST1 Satellite centromeric -339 1224 1163 225 250 24 0 chrY 5999305 5999389 -45514195 + (CA)n Simple_repeat Simple_repeat 1 86 0 244 276 109 63 chrY 5999948 6000122 -45513462 - SST1 Satellite centromeric -226 1337 1156 241 333 56 52 chrY 6000612 6000864 -45512720 - SST1 Satellite centromeric -962 601 349 203 83 0 83 chrY 6002153 6002201 -45511383 + (CA)n Simple_repeat Simple_repeat 1 44 0 207 152 0 0 chrY 6003497 6003543 -45510041 + (CA)n Simple_repeat Simple_repeat 1 46 0 189 0 0 0 chrY 6004304 6004325 -45509259 + (T)n Simple_repeat Simple_repeat 1 21 0 182 104 0 83 chrY 6004535 6004583 -45509001 + (CA)n Simple_repeat Simple_repeat 1 44 0 265 311 9 9 chrY 6004662 6004768 -45508816 - SST1 Satellite centromeric -71 1492 1387 411 311 52 59 chrY 6005341 6005630 -45507954 - SST1 Satellite centromeric -963 600 314 241 250 26 0 chrY 6006851 6006927 -45506657 + (CA)n Simple_repeat Simple_repeat 2 79 0 300 161 0 0 chrY 6008964 6009045 -45504539 + T-rich Low_complexity Low_complexity 1 81 0 208 279 0 0 chrY 6009239 6009300 -45504284 + (CA)n Simple_repeat Simple_repeat 2 62 0 275 329 77 64 chrY 6009324 6009716 -45503868 - SST1 Satellite centromeric -11 1552 1156 240 328 42 72 chrY 6010204 6010469 -45503115 - SST1 Satellite centromeric -963 600 344 194 0 39 0 chrY 6011527 6011553 -45502031 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 286 321 59 63 chrY 6012687 6012974 -45500610 - SST1 Satellite centromeric -962 601 316 223 48 24 24 chrY 6013987 6014029 -45499555 + (TTG)n Simple_repeat Simple_repeat 2 43 0 189 0 0 0 chrY 6014285 6014306 -45499278 + (CA)n Simple_repeat Simple_repeat 1 21 0 394 323 51 36 chrY 6015210 6015600 -45497984 - SST1 Satellite centromeric -961 602 207 252 0 0 0 chrY 6016514 6016542 -45497042 + (T)n Simple_repeat Simple_repeat 1 28 0 226 316 0 25 chrY 6017131 6017210 -45496374 - SST1 Satellite centromeric -325 1238 1162 257 0 30 0 chrY 6018660 6018693 -45494891 + (TTTA)n Simple_repeat Simple_repeat 3 36 0 203 47 70 47 chrY 6018986 6019029 -45494555 + T-rich Low_complexity Low_complexity 2 45 0 201 94 0 0 chrY 6019199 6019231 -45494353 + (CA)n Simple_repeat Simple_repeat 1 32 0 229 255 0 0 chrY 6019509 6019556 -45494028 - SST1 Satellite centromeric -354 1209 1163 281 280 92 74 chrY 6020029 6020486 -45493098 - SST1 Satellite centromeric -962 601 137 683 254 12 48 chrY 6020982 6021314 -45492270 + LTR2 LTR ERV1 1 420 -29 231 36 0 0 chrY 6021314 6021342 -45492242 + (TTTTTG)n Simple_repeat Simple_repeat 3 30 0 2003 230 5 0 chrY 6021364 6021746 -45491838 + Harlequin LTR ERV1 1 384 -6512 452 137 8 18 chrY 6021833 6021960 -45491624 + Harlequin LTR ERV1 525 683 -6213 6029 195 40 7 chrY 6022401 6024918 -45488666 + Harlequin LTR ERV1 658 3376 -4437 6710 200 16 6 chrY 6024919 6026499 -45487085 + Harlequin LTR ERV1 4375 6005 -1808 388 350 0 0 chrY 6026501 6026624 -45486960 + Harlequin LTR ERV1 6383 6505 -1308 721 214 0 0 chrY 6026652 6026783 -45486801 + Harlequin LTR ERV1 6765 6895 -1 708 264 3 36 chrY 6026783 6027144 -45486440 + LTR2 LTR ERV1 1 449 0 227 342 0 0 chrY 6028094 6028173 -45485411 - SST1 Satellite centromeric -322 1241 1163 294 308 80 47 chrY 6028710 6028986 -45484598 - SST1 Satellite centromeric -1072 491 207 245 42 0 83 chrY 6030112 6030160 -45483424 + (CA)n Simple_repeat Simple_repeat 1 44 0 265 294 68 20 chrY 6030205 6030351 -45483233 - SST1 Satellite centromeric -25 1538 1386 206 197 45 0 chrY 6032489 6032555 -45481029 + (CA)n Simple_repeat Simple_repeat 1 69 0 227 341 12 12 chrY 6032890 6032975 -45480609 - SST1 Satellite centromeric -344 1219 1135 227 324 77 50 chrY 6033433 6033915 -45479669 - SST1 Satellite centromeric -962 601 107 204 135 0 0 chrY 6034940 6034977 -45478607 + (CA)n Simple_repeat Simple_repeat 2 38 0 286 320 10 10 chrY 6035334 6035431 -45478153 - SST1 Satellite centromeric -335 1228 1132 315 299 23 40 chrY 6036213 6036387 -45477197 - SST1 Satellite centromeric -1289 274 104 216 143 0 0 chrY 6038276 6038318 -45475266 + (CA)n Simple_repeat Simple_repeat 1 42 0 252 246 0 46 chrY 6038695 6038760 -45474824 - SST1 Satellite centromeric -346 1217 1156 280 321 59 56 chrY 6039247 6039534 -45474050 - SST1 Satellite centromeric -962 601 314 249 33 0 0 chrY 6040550 6040580 -45473004 + (T)n Simple_repeat Simple_repeat 1 30 0 287 270 125 40 chrY 6040900 6041052 -45472532 - SST1 Satellite centromeric -25 1538 1374 458 315 61 52 chrY 6041773 6042233 -45471351 - SST1 Satellite centromeric -962 601 138 301 318 66 42 chrY 6043640 6043926 -45469658 - SST1 Satellite centromeric -1081 482 190 328 315 61 51 chrY 6045892 6046283 -45467301 - SST1 Satellite centromeric -962 601 207 195 129 0 0 chrY 6047147 6047178 -45466406 + (T)n Simple_repeat Simple_repeat 1 31 0 264 91 0 0 chrY 6047435 6047479 -45466105 + (CA)n Simple_repeat Simple_repeat 1 44 0 392 323 49 36 chrY 6050988 6051378 -45462206 - SST1 Satellite centromeric -962 601 207 192 111 0 0 chrY 6052506 6052542 -45461042 + (CA)n Simple_repeat Simple_repeat 1 36 0 230 305 62 51 chrY 6054739 6054916 -45458668 - SST1 Satellite centromeric -1165 398 220 192 40 0 0 chrY 6055839 6055864 -45457720 + (TTTG)n Simple_repeat Simple_repeat 2 26 0 216 253 13 0 chrY 6056064 6056139 -45457445 + (CA)n Simple_repeat Simple_repeat 1 76 0 276 247 21 0 chrY 6057096 6057193 -45456391 + (CA)n Simple_repeat Simple_repeat 2 100 0 273 29 0 0 chrY 6059554 6059588 -45453996 + (CA)n Simple_repeat Simple_repeat 1 34 0 228 275 33 33 chrY 6059948 6060039 -45453545 - SST1 Satellite centromeric -325 1238 1148 291 28 0 0 chrY 6061441 6061477 -45452107 + (TG)n Simple_repeat Simple_repeat 1 36 0 246 32 0 0 chrY 6062757 6062788 -45450796 + (CA)n Simple_repeat Simple_repeat 2 32 0 236 268 42 0 chrY 6063897 6063968 -45449616 - SST1 Satellite centromeric -334 1229 1156 207 0 0 0 chrY 6065236 6065259 -45448325 + (CAAAA)n Simple_repeat Simple_repeat 3 25 0 237 236 22 11 chrY 6066584 6066673 -45446911 + (CA)n Simple_repeat Simple_repeat 1 90 0 349 287 65 53 chrY 6067536 6067783 -45445801 - SST1 Satellite centromeric -962 601 352 215 24 0 98 chrY 6068981 6069022 -45444562 + (CA)n Simple_repeat Simple_repeat 1 37 0 471 277 80 72 chrY 6069937 6070327 -45443257 - SST1 Satellite centromeric -962 601 209 249 108 0 0 chrY 6071930 6071967 -45441617 + (T)n Simple_repeat Simple_repeat 1 37 0 268 202 24 12 chrY 6072492 6072576 -45441008 + (CA)n Simple_repeat Simple_repeat 2 86 0 242 309 0 0 chrY 6072887 6072955 -45440629 - SST1 Satellite centromeric -334 1229 1162 227 160 40 40 chrY 6073749 6073799 -45439785 - SST1 Satellite centromeric -1285 278 229 420 20 0 0 chrY 6074935 6074984 -45438600 + (CA)n Simple_repeat Simple_repeat 2 50 0 259 280 78 102 chrY 6075087 6075419 -45438165 - SST1 Satellite centromeric -77 1486 1163 258 293 68 78 chrY 6075917 6076316 -45437268 - SST1 Satellite centromeric -962 601 207 227 338 0 0 chrY 6077830 6077898 -45435686 - SST1 Satellite centromeric -334 1229 1162 248 349 39 35 chrY 6078366 6078621 -45434963 - SST1 Satellite centromeric -964 599 344 225 200 17 0 chrY 6079551 6079611 -45433973 + (CA)n Simple_repeat Simple_repeat 2 62 0 271 348 50 35 chrY 6080535 6080998 -45432586 - SST1 Satellite centromeric -962 601 132 211 270 22 0 chrY 6081944 6082033 -45431551 + (CA)n Simple_repeat Simple_repeat 2 92 0 353 322 61 47 chrY 6082988 6083413 -45430171 - SST1 Satellite centromeric -1039 524 94 2543 151 42 150 chrY 6084297 6085059 -45428525 - LTR1 LTR ERV1 -104 681 2 334 172 0 0 chrY 6085068 6085126 -45428458 - L1MC4 LINE L1 -1375 6667 6610 25 31 0 0 chrY 6086274 6086306 -45427278 + AT_rich Low_complexity Low_complexity 1 32 0 377 264 11 0 chrY 6086309 6086396 -45427188 - FRAM SINE Alu -10 156 69 23 0 0 0 chrY 6086429 6086452 -45427132 + AT_rich Low_complexity Low_complexity 1 23 0 319 313 17 9 chrY 6086452 6086567 -45427017 - FLAM_C SINE Alu -7 126 11 261 0 0 0 chrY 6088730 6088759 -45424825 + (TA)n Simple_repeat Simple_repeat 2 30 0 280 274 103 17 chrY 6089593 6089710 -45423874 + MLT1F LTR MaLR 389 515 -27 1124 217 34 24 chrY 6089879 6090174 -45423410 + AluSx SINE Alu 1 298 -4 1264 203 0 48 chrY 6090229 6090524 -45423060 + AluSx SINE Alu 12 292 -20 969 120 11 11 chrY 6090542 6090717 -45422867 + (GAAA)n Simple_repeat Simple_repeat 4 178 0 270 125 0 0 chrY 6090718 6090766 -45422818 + (GGAA)n Simple_repeat Simple_repeat 1 48 0 347 259 14 119 chrY 6091380 6091523 -45422061 - FLAM_C SINE Alu -5 128 1 287 273 11 23 chrY 6091663 6091751 -45421833 + MLT1E LTR MaLR 385 471 -122 197 119 24 0 chrY 6091755 6091797 -45421787 + (TG)n Simple_repeat Simple_repeat 2 44 0 595 369 44 20 chrY 6092763 6093221 -45420363 - L1M3b LINE L1 -5771 510 42 265 281 143 71 chrY 6093250 6093295 -45420289 - L1M3de LINE L1 -5750 903 863 1510 197 0 14 chrY 6093295 6093574 -45420010 + AluSc SINE Alu 14 288 -21 265 281 143 71 chrY 6093574 6093766 -45419818 - L1M3de LINE L1 -5790 863 649 1335 244 35 45 chrY 6093777 6094203 -45419381 - MSTB LTR MaLR -4 422 1 1762 174 13 3 chrY 6094535 6094839 -45418745 + AluSx SINE Alu 1 307 -5 358 344 23 20 chrY 6094879 6095122 -45418462 - L1M3de LINE L1 -5217 1436 604 22 35 0 0 chrY 6095366 6095395 -45418189 + AT_rich Low_complexity Low_complexity 1 29 0 253 220 0 0 chrY 6095395 6095454 -45418130 - L1MA4 LINE L1 -10 6290 6232 488 238 36 42 chrY 6095500 6095633 -45417951 + L1MA4 LINE L1 6039 6172 -128 1089 240 52 14 chrY 6095633 6095921 -45417663 + AluJo SINE Alu 2 300 -2 488 238 36 42 chrY 6095921 6095955 -45417629 + L1MA4 LINE L1 6172 6205 -95 1495 193 3 21 chrY 6095986 6096276 -45417308 - AluSx SINE Alu -25 287 3 1134 211 41 15 chrY 6096474 6096740 -45416844 + AluSg SINE Alu 15 287 -23 1600 189 3 0 chrY 6098280 6098582 -45415002 + L1MB1 LINE L1 5865 6167 -1 23 0 0 0 chrY 6098903 6098926 -45414658 + AT_rich Low_complexity Low_complexity 1 23 0 387 60 0 0 chrY 6098992 6099042 -45414542 + (TAA)n Simple_repeat Simple_repeat 2 51 0 21 0 0 0 chrY 6099178 6099199 -45414385 + AT_rich Low_complexity Low_complexity 1 21 0 22 0 0 0 chrY 6099326 6099348 -45414236 + AT_rich Low_complexity Low_complexity 1 22 0 1612 155 35 21 chrY 6099394 6099701 -45413883 + AluSg SINE Alu 1 310 0 4836 209 31 15 chrY 6100706 6102616 -45410968 + L1PA16 LINE L1 3990 5924 -242 451 263 0 8 chrY 6102616 6102734 -45410850 + L1P LINE L1 4845 4961 -1185 270 207 0 0 chrY 6102731 6102789 -45410795 - L1PA16 LINE L1 -169 5997 5940 * 1018 195 10 5 chrY 6102804 6102999 -45410585 + L1PA16 LINE L1 5935 6130 -36 26 0 0 0 chrY 6103063 6103089 -45410495 + AT_rich Low_complexity Low_complexity 1 26 0 522 341 110 60 chrY 6103680 6103983 -45409601 - L2 LINE L2 -35 3237 2951 1996 134 0 17 chrY 6103983 6104281 -45409303 + AluSc SINE Alu 1 293 -16 522 341 110 60 chrY 6104281 6104670 -45408914 - L2 LINE L2 -321 2951 2517 890 61 0 0 chrY 6105305 6105419 -45408165 + L1PA4 LINE L1 6038 6151 -4 1472 153 42 0 chrY 6106197 6106433 -45407151 - AluSq SINE Alu -27 286 41 2846 264 41 94 chrY 6106631 6107281 -45406303 - L2 LINE L2 -214 3099 2474 866 0 0 0 chrY 6107281 6107377 -45406207 - AluYa5/8 SINE Alu -5 306 211 2846 264 41 94 chrY 6107377 6108061 -45405523 - L2 LINE L2 -839 2474 1755 1003 333 85 43 chrY 6108107 6108848 -45404736 - L2 LINE L2 -2325 989 218 4779 186 25 12 chrY 6108947 6109946 -45403638 - L1PA16 LINE L1 -11 6155 5144 2904 107 23 7 chrY 6109946 6110387 -45403197 + LTR7 LTR ERV1 1 448 -2 4779 186 25 12 chrY 6110387 6110627 -45402957 - L1PA16 LINE L1 -1022 5144 4909 750 265 33 23 chrY 6110722 6110937 -45402647 + MER58A DNA MER1_type 2 218 -6 217 326 11 34 chrY 6111006 6111095 -45402489 - MER5B DNA MER1_type -67 111 25 1973 196 61 25 chrY 6111616 6112059 -45401525 + LTR2B LTR ERV1 32 490 0 39800 216 10 8 chrY 6112059 6119859 -45393725 + HERVE LTR ERV1 1 7812 -1 1762 227 61 20 chrY 6119878 6120319 -45393265 + LTR2B LTR ERV1 32 490 0 202 273 18 0 chrY 6121186 6121241 -45392343 - MIR SINE MIR -66 142 87 545 345 72 5 chrY 6122338 6122547 -45391037 + MIR SINE MIR 36 258 -4 193 318 0 0 chrY 6122637 6122681 -45390903 + L2 LINE L2 3210 3253 -19 502 352 28 28 chrY 6123204 6123491 -45390093 - L3 LINE CR1 -78 1499 1213 1349 240 17 40 chrY 6123682 6124032 -45389552 - MLT1A1 LTR MaLR 0 365 24 2601 222 63 9 chrY 6124753 6125326 -45388258 - MER90 LTR ERV1 -10 604 1 409 280 93 90 chrY 6125352 6125620 -45387964 - L2 LINE L2 -65 3248 2980 247 270 112 66 chrY 6126679 6126831 -45386753 - MIR SINE MIR -56 206 48 287 304 114 43 chrY 6126893 6127077 -45386507 + MIR SINE MIR 66 262 0 313 325 25 8 chrY 6127105 6127225 -45386359 + MIR SINE MIR 124 245 -17 21 57 0 0 chrY 6129100 6129135 -45384449 + AT_rich Low_complexity Low_complexity 1 35 0 273 320 271 36 chrY 6130443 6130746 -45382838 - L2 LINE L2 -2 3311 2938 2749 23 0 0 chrY 6130766 6131076 -45382508 - AluYa5 SINE Alu -1 310 1 394 225 66 60 chrY 6132120 6132271 -45381313 + MIR SINE MIR 101 252 -10 1133 142 0 6 chrY 6132474 6132650 -45380934 - THE1C LTR MaLR -2 373 199 1808 158 59 31 chrY 6132657 6133011 -45380573 - THE1B LTR MaLR 0 364 1 4449 118 3 0 chrY 6133015 6133632 -45379952 - THE1B-int LTR MaLR -4 1576 958 3181 122 2 0 chrY 6133630 6134106 -45379478 - THE1B-int LTR MaLR -1088 492 16 * 1833 178 48 22 chrY 6134122 6134477 -45379107 - THE1B LTR MaLR 0 364 1 1071 192 21 0 chrY 6134478 6134671 -45378913 - THE1C LTR MaLR -178 197 1 953 214 136 16 chrY 6134750 6134993 -45378591 + AluSx SINE Alu 1 272 -40 281 259 35 26 chrY 6135167 6135283 -45378301 - L1MC5 LINE L1 -528 7433 7317 451 215 9 19 chrY 6135326 6135433 -45378151 - LTR16B LTR ERVL 0 464 359 268 366 37 101 chrY 6135609 6135964 -45377620 + L2 LINE L2 2936 3267 -5 345 283 151 19 chrY 6136064 6136223 -45377361 + MIR SINE MIR 12 191 -71 2019 150 0 3 chrY 6136371 6136664 -45376920 + AluSg SINE Alu 1 292 -18 1163 306 63 42 chrY 6136707 6137511 -45376073 - L2 LINE L2 -19 3294 2466 195 42 0 0 chrY 6137515 6137539 -45376045 + (TAA)n Simple_repeat Simple_repeat 3 26 0 487 302 63 40 chrY 6137552 6137774 -45375810 - MIR SINE MIR -23 239 13 236 289 0 0 chrY 6137910 6137962 -45375622 + LTR30 LTR ERV1 1 52 -670 1199 146 54 65 chrY 6137962 6138225 -45375359 + LTR12 LTR ERV1 53 258 -456 320 283 10 0 chrY 6138226 6138325 -45375259 + LTR30 LTR ERV1 525 624 -98 712 173 3 71 chrY 6138325 6138466 -45375118 + LTR12 LTR ERV1 300 483 -231 * 5773 138 1 7 chrY 6138460 6139352 -45374232 + HERV9 LTR ERV1 2086 2972 -5427 1045 155 92 5 chrY 6139351 6139558 -45374026 + HERV9 LTR ERV1 4756 4980 -3419 * 2282 176 90 88 chrY 6139525 6140424 -45373160 + HERV9 LTR ERV1 840 1740 -5156 269 105 0 0 chrY 6140422 6140460 -45373124 + HERV9 LTR ERV1 7626 7663 -736 * 1410 190 4 0 chrY 6140455 6140708 -45372876 + HERV9 LTR ERV1 7796 8049 -350 255 339 52 17 chrY 6141335 6141450 -45372134 + MIR SINE MIR 56 174 -88 407 309 54 36 chrY 6141661 6141820 -45371764 + MIR3 SINE MIR 35 199 -9 716 296 14 9 chrY 6141820 6142043 -45371541 - MER58A DNA MER1_type 0 224 1 189 0 0 0 chrY 6143368 6143389 -45370195 + (T)n Simple_repeat Simple_repeat 1 21 0 245 29 29 0 chrY 6143567 6143601 -45369983 + (CA)n Simple_repeat Simple_repeat 2 36 0 721 224 8 100 chrY 6143640 6143881 -45369703 + MER20 DNA MER1_type 1 219 0 1988 129 6 3 chrY 6144572 6144883 -45368701 - AluSp SINE Alu -1 312 1 381 271 84 67 chrY 6145146 6145537 -45368047 - L1MC/D LINE L1 -2048 5760 5363 421 298 88 19 chrY 6145590 6145795 -45367789 - L1MC/D LINE L1 -801 5345 5127 1916 140 39 0 chrY 6146256 6146541 -45367043 - AluSx SINE Alu -14 298 3 279 309 50 69 chrY 6146808 6147187 -45366397 - L1MC/D LINE L1 -2200 3946 3575 279 0 0 0 chrY 6147233 6147264 -45366320 + (GA)n Simple_repeat Simple_repeat 2 32 0 1431 176 44 37 chrY 6147338 6147610 -45365974 + THE1B LTR MaLR 1 274 -90 527 238 7 7 chrY 6147644 6147787 -45365797 + L1MB7 LINE L1 6033 6175 -9 358 336 43 43 chrY 6147834 6148114 -45365470 - L2 LINE L2 -809 2505 2226 300 53 0 0 chrY 6148926 6148964 -45364620 + (TG)n Simple_repeat Simple_repeat 2 39 0 319 320 41 46 chrY 6149776 6149970 -45363614 + MIR SINE MIR 60 252 -10 193 111 0 0 chrY 6150754 6150781 -45362803 - MIR SINE MIR -155 107 81 243 88 0 0 chrY 6150795 6150829 -45362755 + (TG)n Simple_repeat Simple_repeat 1 34 0 5869 118 20 3 chrY 6152425 6153874 -45359710 + L1PA11 LINE L1 4697 6169 -5 225 186 0 23 chrY 6153972 6154015 -45359569 + L2 LINE L2 3268 3309 -4 202 346 48 19 chrY 6154020 6154124 -45359460 - MIR SINE MIR -65 143 37 482 302 48 40 chrY 6154371 6154619 -45358965 - MIR SINE MIR -2 260 11 22 0 0 0 chrY 6155304 6155326 -45358258 + AT_rich Low_complexity Low_complexity 1 22 0 1131 233 77 52 chrY 6155454 6155573 -45358011 - MLT1A2 LTR MaLR 0 374 259 1927 154 0 10 chrY 6155573 6155878 -45357706 + AluSx SINE Alu 1 302 -10 1131 233 77 52 chrY 6155878 6156123 -45357461 - MLT1A2 LTR MaLR -115 259 1 266 303 13 0 chrY 6156538 6156614 -45356970 - MER81 DNA DNA -2 112 36 248 175 0 0 chrY 6158333 6158396 -45355188 + L1MA3 LINE L1 6243 6305 0 183 42 0 0 chrY 6158685 6158709 -45354875 + (TTTG)n Simple_repeat Simple_repeat 2 25 0 1482 153 3 93 chrY 6158729 6159030 -45354554 - AluSc SINE Alu -35 274 1 589 159 7 43 chrY 6159456 6159594 -45353990 + L1MA7 LINE L1 6158 6290 -1 756 151 0 0 chrY 6160430 6160600 -45352984 - AluSg/x SINE Alu 0 336 167 1454 156 34 1 chrY 6160601 6160839 -45352745 - LTR12 LTR ERV1 0 2425 478 325 247 31 0 chrY 6160846 6160943 -45352641 - LTR30 LTR ERV1 -99 623 524 1274 134 0 144 chrY 6160943 6161220 -45352364 - LTR12 LTR ERV1 -456 258 22 235 214 89 0 chrY 6161220 6161276 -45352308 - AluSq SINE Alu -109 194 134 644 215 15 0 chrY 6161276 6161406 -45352178 - AluJo/FLAM SINE Alu -169 133 2 909 155 7 7 chrY 6162679 6162859 -45350725 - AluSc SINE Alu 0 310 131 671 172 86 17 chrY 6162948 6163122 -45350462 - MER53 DNA DNA -1 188 3 573 320 34 7 chrY 6163232 6163604 -45349980 - L1ME LINE L1 -595 5571 5194 296 298 67 58 chrY 6163792 6163993 -45349591 - L1ME LINE L1 -3415 2731 2533 1995 125 0 67 chrY 6163993 6164321 -45349263 + AluSx SINE Alu 1 306 -6 296 298 67 58 chrY 6164321 6164615 -45348969 - L1ME LINE L1 -3613 2533 2232 207 139 0 0 chrY 6164679 6164715 -45348869 + (TA)n Simple_repeat Simple_repeat 2 37 0 305 318 23 0 chrY 6164718 6164806 -45348778 - L1MC4 LINE L1 -1340 6702 6613 305 318 23 0 chrY 6164806 6164894 -45348690 - L1MC4 LINE L1 -1340 6702 6613 319 311 0 0 chrY 6164907 6164997 -45348587 - L1MC4 LINE L1 -1339 6703 6614 313 233 0 68 chrY 6164914 6165017 -45348567 + L1MC4 LINE L1 6610 6705 -1337 * 480 245 0 0 chrY 6165017 6165160 -45348424 + (TA)n Simple_repeat Simple_repeat 1 143 0 2691 26 0 10 chrY 6165160 6165473 -45348111 - AluYa5 SINE Alu -1 310 1 468 192 30 1 chrY 6165475 6165590 -45347994 - L1MA6 LINE L1 0 6300 6174 24 67 0 0 chrY 6165751 6165796 -45347788 + AT_rich Low_complexity Low_complexity 1 45 0 41 21 0 0 chrY 6165924 6165972 -45347612 + AT_rich Low_complexity Low_complexity 1 48 0 333 309 21 0 chrY 6166188 6166282 -45347302 - MIR SINE MIR -126 136 41 342 0 0 0 chrY 6166317 6166355 -45347229 + (CA)n Simple_repeat Simple_repeat 1 38 0 240 35 0 0 chrY 6166405 6166434 -45347150 + (CA)n Simple_repeat Simple_repeat 2 30 0 386 308 17 8 chrY 6167160 6167280 -45346304 + L2 LINE L2 3189 3309 -4 181 297 16 31 chrY 6168215 6168279 -45345305 + MIR SINE MIR 83 145 -63 1815 171 0 0 chrY 6168601 6168906 -45344678 + AluSx SINE Alu 1 305 0 534 172 104 8 chrY 6169160 6169294 -45344290 + MER96B DNA MER1_type? 88 234 -183 317 359 70 30 chrY 6169511 6169882 -45343702 - L1M4 LINE L1 -3631 2515 2130 364 257 0 38 chrY 6170054 6170159 -45343425 + L1M4 LINE L1 4915 5015 -1131 567 145 84 0 chrY 6170159 6170290 -45343294 + L1MB7 LINE L1 6043 6184 0 1671 226 56 8 chrY 6171403 6171486 -45342098 + LTR2 LTR ERV1 41 119 -330 321 26 0 0 chrY 6171486 6171524 -45342060 + (TAA)n Simple_repeat Simple_repeat 2 39 0 1671 226 56 8 chrY 6171524 6171830 -45341754 + LTR2 LTR ERV1 119 449 0 16359 99 3 5 chrY 6171830 6174093 -45339491 + HERVE LTR ERV1 1 2259 -5554 3242 89 8 43 chrY 6174091 6174575 -45339009 + HERVE LTR ERV1 3061 3527 -4286 * 2087 192 30 82 chrY 6174575 6175170 -45338414 - LTR6A LTR ERV1 0 564 1 244 111 0 74 chrY 6175177 6175231 -45338353 - LTR6B LTR ERV1 -508 50 1 31935 90 3 8 chrY 6175231 6179540 -45334044 + HERVE LTR ERV1 3524 7812 -1 1693 201 67 15 chrY 6179629 6179712 -45333872 + LTR2 LTR ERV1 41 118 -331 369 0 0 0 chrY 6179712 6179753 -45333831 + (TAA)n Simple_repeat Simple_repeat 2 42 0 1693 201 67 15 chrY 6179753 6180058 -45333526 + LTR2 LTR ERV1 118 449 0 12322 68 2 16 chrY 6180118 6182564 -45331020 - L1PA5 LINE L1 -4 6150 3721 474 65 0 0 chrY 6183296 6183358 -45330226 + (ATG)n Simple_repeat Simple_repeat 2 63 0 326 307 102 0 chrY 6183396 6183523 -45330061 - MIR SINE MIR -42 220 81 201 176 0 0 chrY 6185853 6185887 -45327697 + A-rich Low_complexity Low_complexity 1 34 0 1019 268 69 7 chrY 6186049 6186355 -45327229 - MER58B DNA MER1_type -2 339 15 295 373 71 6 chrY 6186564 6186733 -45326851 + MIR SINE MIR 13 192 -70 2021 130 27 0 chrY 6187276 6187575 -45326009 + AluSx SINE Alu 4 310 -2 21 36 0 0 chrY 6187712 6187740 -45325844 + AT_rich Low_complexity Low_complexity 1 28 0 324 0 0 0 chrY 6188254 6188290 -45325294 + (GA)n Simple_repeat Simple_repeat 1 36 0 496 206 24 8 chrY 6188657 6188783 -45324801 + L1MA4 LINE L1 5545 5672 -628 1127 226 0 5 chrY 6188783 6189000 -45324584 + AluJb SINE Alu 65 280 -32 3000 168 11 27 chrY 6189003 6189442 -45324142 + L1MA4 LINE L1 5672 6100 -200 1620 199 3 3 chrY 6189442 6189734 -45323850 + AluJb SINE Alu 1 292 -20 3000 168 11 27 chrY 6189734 6189918 -45323666 + L1MA4 LINE L1 6100 6285 -15 825 304 156 2 chrY 6190465 6191047 -45322537 - L1M4 LINE L1 -3037 3109 2438 368 246 59 36 chrY 6191068 6191288 -45322296 - L1M4 LINE L1 -3784 2362 2138 360 191 0 0 chrY 6191417 6191480 -45322104 - Tigger5 DNA MER2_type -3 2320 2258 215 106 30 76 chrY 6191481 6191547 -45322037 + (TA)n Simple_repeat Simple_repeat 2 64 0 301 229 14 0 chrY 6191596 6191666 -45321918 + L1MCa LINE L1 1994 2064 -4362 25 0 0 0 chrY 6191776 6191801 -45321783 + AT_rich Low_complexity Low_complexity 1 25 0 302 143 0 0 chrY 6192335 6192377 -45321207 - LTR33 LTR ERVL -2 519 478 * 781 339 85 6 chrY 6192376 6192718 -45320866 - LTR33 LTR ERVL -152 369 1 373 289 75 54 chrY 6192916 6193196 -45320388 - L1MC5 LINE L1 -37 7924 7639 485 276 40 9 chrY 6193286 6193552 -45320032 - L1MC5 LINE L1 -413 7395 7262 549 289 49 26 chrY 6193610 6193914 -45319670 - L1MC5 LINE L1 -744 7217 6907 327 333 62 23 chrY 6195012 6195141 -45318443 - MIR3 SINE MIR -43 165 32 182 296 19 0 chrY 6195215 6195269 -45318315 - MIR3 SINE MIR -3 205 151 205 340 28 66 chrY 6195311 6195417 -45318167 - MER5B DNA MER1_type -72 106 5 273 86 52 0 chrY 6196363 6196421 -45317163 + GA-rich Low_complexity Low_complexity 2 62 0 301 361 31 47 chrY 6196750 6196941 -45316643 + MIR SINE MIR 19 206 -56 357 299 48 42 chrY 6197506 6197673 -45315911 + L1ME LINE L1 5326 5493 -628 23 0 0 0 chrY 6198147 6198170 -45315414 + AT_rich Low_complexity Low_complexity 1 23 0 256 319 39 69 chrY 6198669 6198873 -45314711 + MIR SINE MIR 20 217 -45 381 403 0 0 chrY 6199273 6199392 -45314192 + L2 LINE L2 3133 3251 -21 32 0 0 0 chrY 6199420 6199452 -45314132 + AT_rich Low_complexity Low_complexity 1 32 0 204 292 0 0 chrY 6199491 6199539 -45314045 + L2 LINE L2 3248 3295 -18 2555 59 0 0 chrY 6201072 6201378 -45312206 - AluY SINE Alu -5 306 1 7176 104 6 20 chrY 6201823 6202895 -45310689 + MER11C LTR ERVK 1 1057 -14 21 36 0 0 chrY 6206140 6206168 -45307416 + AT_rich Low_complexity Low_complexity 1 28 0 21 0 0 0 chrY 6206470 6206491 -45307093 + AT_rich Low_complexity Low_complexity 1 21 0 1205 229 14 10 chrY 6206510 6206798 -45306786 + AluJo SINE Alu 13 301 -11 1854 172 7 0 chrY 6206798 6207094 -45306490 + AluSx SINE Alu 1 298 -14 1430 172 0 101 chrY 6208858 6209170 -45304414 + AluSx SINE Alu 1 280 -32 315 0 0 0 chrY 6209170 6209205 -45304379 + (CA)n Simple_repeat Simple_repeat 2 36 0 1430 172 0 101 chrY 6209205 6209218 -45304366 + AluSx SINE Alu 280 293 -19 183 305 67 29 chrY 6212712 6212817 -45300767 + L2 LINE L2 390 498 -2816 510 253 0 0 chrY 6213564 6213663 -45299921 + AluJ/FLAM SINE Alu 3 101 -211 343 120 0 0 chrY 6213683 6213733 -45299851 - MER1B DNA MER1_type -13 326 277 351 107 0 107 chrY 6213902 6213977 -45299607 - MER1B DNA MER1_type -62 277 211 327 134 82 104 chrY 6214072 6214169 -45299415 + L1MA7 LINE L1 6132 6227 -64 937 183 183 38 chrY 6214169 6214432 -45299152 + AluJo SINE Alu 2 302 0 327 134 82 104 chrY 6214432 6214468 -45299116 + L1MA7 LINE L1 6227 6262 -29 239 71 24 0 chrY 6214759 6214801 -45298783 + (TTATG)n Simple_repeat Simple_repeat 2 44 0 2121 81 0 7 chrY 6214936 6215243 -45298341 - AluY SINE Alu 0 305 1 333 47 0 0 chrY 6215266 6215309 -45298275 + (TG)n Simple_repeat Simple_repeat 2 44 0 1759 171 3 7 chrY 6217097 6217407 -45296177 - AluSc SINE Alu 0 309 1 1601 182 0 7 chrY 6219394 6219674 -45293910 + AluSg SINE Alu 5 282 -28 1090 261 38 21 chrY 6221100 6221387 -45292197 - AluJo SINE Alu -10 292 1 28 0 0 0 chrY 6221495 6221523 -45292061 + AT_rich Low_complexity Low_complexity 1 28 0 1767 254 170 15 chrY 6222836 6223636 -45289948 - L1MB4 LINE L1 0 6180 5257 1406 201 31 3 chrY 6225556 6225844 -45287740 - AluSg SINE Alu -14 296 1 193 127 0 48 chrY 6226022 6226085 -45287499 + (TTTTTA)n Simple_repeat Simple_repeat 2 61 0 6586 73 17 8 chrY 6226086 6227508 -45286076 - SVA Other Other -875 1384 29 1411 219 3 14 chrY 6227813 6228101 -45285483 + AluSx SINE Alu 3 287 -25 983 249 55 18 chrY 6228167 6228335 -45285249 - AluJo SINE Alu -13 299 116 258 56 0 0 chrY 6228335 6228371 -45285213 + (TG)n Simple_repeat Simple_repeat 1 36 0 983 249 55 18 chrY 6228371 6228475 -45285109 - AluJo SINE Alu -196 116 17 514 250 48 12 chrY 6228483 6228651 -45284933 - L1MA4 LINE L1 -124 6176 6003 335 162 59 0 chrY 6228654 6228722 -45284862 + L1MA4 LINE L1 6218 6289 -11 276 301 30 38 chrY 6228748 6228881 -45284703 + L1M3d LINE L1 764 895 -5758 360 341 31 63 chrY 6228995 6229279 -45284305 + L1M3d LINE L1 371 662 -5991 2086 140 0 7 chrY 6229279 6229586 -45283998 - AluSx SINE Alu -7 305 1 360 341 31 63 chrY 6229586 6229643 -45283941 + L1M3d LINE L1 662 1436 -5217 1669 212 49 49 chrY 6229924 6230353 -45283231 + MSTB1 LTR MaLR 4 432 0 279 294 9 28 chrY 6230360 6230469 -45283115 + L1M3de LINE L1 649 755 -5898 1613 173 0 44 chrY 6230567 6230896 -45282688 - AluSg SINE Alu 0 316 1 744 338 49 36 chrY 6230980 6231430 -45282154 + L1M3b LINE L1 55 510 -5771 232 204 20 0 chrY 6232276 6232325 -45281259 - L1MC/D LINE L1 -1999 5809 5760 587 211 7 112 chrY 6232593 6232745 -45280839 + FLAM_C SINE Alu 2 137 -6 761 160 6 17 chrY 6233372 6233553 -45280031 + CT-rich Low_complexity Low_complexity 2 180 0 1458 228 0 27 chrY 6233589 6233887 -45279697 - AluSx SINE Alu -8 294 5 1345 226 13 0 chrY 6233932 6234238 -45279346 - AluSx SINE Alu -2 310 1 368 280 58 77 chrY 6234710 6235153 -45278431 - MLT1F LTR MaLR -27 515 102 839 99 0 0 chrY 6240122 6240233 -45273351 - L1P3 LINE L1 -614 5540 5430 2358 104 0 0 chrY 6240233 6240549 -45273035 + L1PA6 LINE L1 5837 6154 0 683 143 7 20 chrY 6241843 6241990 -45271594 + GA-rich Low_complexity Low_complexity 3 147 0 22 35 0 0 chrY 6242500 6242529 -45271055 + AT_rich Low_complexity Low_complexity 1 29 0 720 221 89 13 chrY 6244235 6244348 -45269236 + AluJo SINE Alu 11 141 -171 186 43 0 0 chrY 6244348 6244371 -45269213 + (TTAA)n Simple_repeat Simple_repeat 2 24 0 720 221 89 13 chrY 6244371 6244415 -45269169 + AluJo SINE Alu 141 180 -132 240 174 0 22 chrY 6244453 6244499 -45269085 + Alu SINE Alu 86 130 -172 185 178 67 0 chrY 6245022 6245067 -45268517 + L2 LINE L2 3262 3309 -4 228 299 207 18 chrY 6245460 6245624 -45267960 + LTR33A LTR ERVL 131 325 -198 21 0 0 0 chrY 6245664 6245685 -45267899 + AT_rich Low_complexity Low_complexity 1 21 0 560 198 0 24 chrY 6245685 6245811 -45267773 + LTR1 LTR ERV1 1 123 -662 2421 172 36 62 chrY 6245812 6246421 -45267163 + LTR1 LTR ERV1 89 681 -104 6171 160 112 109 chrY 6246763 6248453 -45265131 + pTR5 LTR ERV1 743 2436 -2 655 170 18 0 chrY 6248487 6248599 -45264985 - MER41E LTR ERV1 -393 119 6 3791 179 51 17 chrY 6250707 6251489 -45262095 - L1PA16 LINE L1 -1 6165 5357 26286 82 3 2 chrY 6251645 6257781 -45255803 - L1PA5 LINE L1 -4 6150 12 22 0 0 0 chrY 6260111 6260133 -45253451 + AT_rich Low_complexity Low_complexity 1 22 0 394 316 73 10 chrY 6260263 6260469 -45253115 - L1ME LINE L1 -653 5511 5293 21 0 0 0 chrY 6260556 6260577 -45253007 + AT_rich Low_complexity Low_complexity 1 21 0 206 315 27 27 chrY 6260855 6260928 -45252656 + MER5A DNA MER1_type 43 115 -74 766 133 9 0 chrY 6262329 6262442 -45251142 - AluSc SINE Alu -193 116 3 24 0 0 0 chrY 6262442 6262466 -45251118 + AT_rich Low_complexity Low_complexity 1 24 0 1590 163 29 0 chrY 6262832 6263155 -45250429 + AluSq SINE Alu 1 331 0 26 0 0 0 chrY 6263314 6263340 -45250244 + AT_rich Low_complexity Low_complexity 1 26 0 22 0 0 0 chrY 6263821 6263843 -45249741 + AT_rich Low_complexity Low_complexity 1 22 0 327 214 0 22 chrY 6264003 6264092 -45249492 - L1MA9 LINE L1 -147 6165 6079 17557 46 1 28 chrY 6264629 6266945 -45246639 + L1PA4 LINE L1 3159 5449 -706 2183 97 0 31 chrY 6266945 6267265 -45246319 + AluY SINE Alu 1 310 -1 17557 46 1 28 chrY 6267265 6267951 -45245633 + L1PA4 LINE L1 5449 6152 -3 252 86 0 0 chrY 6268730 6268765 -45244819 + (GGAA)n Simple_repeat Simple_repeat 4 38 0 1992 122 17 7 chrY 6271544 6271917 -45241667 - AluY SINE Alu 0 385 10 1451 202 40 11 chrY 6272557 6272834 -45240750 + AluSx SINE Alu 3 287 -25 23 0 0 0 chrY 6272834 6272857 -45240727 + AT_rich Low_complexity Low_complexity 1 23 0 29 21 0 21 chrY 6273218 6273238 -45240346 + AT_rich Low_complexity Low_complexity 1 20 -26 189 0 0 0 chrY 6273238 6273259 -45240325 + (TTATA)n Simple_repeat Simple_repeat 5 25 0 29 21 0 21 chrY 6273259 6273285 -45240299 + AT_rich Low_complexity Low_complexity 20 46 0 405 218 0 0 chrY 6274762 6274886 -45238698 + GA-rich Low_complexity Low_complexity 1 124 0 610 156 11 22 chrY 6275665 6275915 -45237669 + CT-rich Low_complexity Low_complexity 1 247 0 1320 233 0 29 chrY 6275928 6276237 -45237347 - AluSx SINE Alu -8 304 5 356 0 23 0 chrY 6276283 6276327 -45237257 + (TTTTA)n Simple_repeat Simple_repeat 2 46 0 1290 232 11 0 chrY 6276329 6276613 -45236971 - AluSx SINE Alu -25 287 1 234 174 22 0 chrY 6276724 6276770 -45236814 + (CA)n Simple_repeat Simple_repeat 2 48 0 301 254 66 25 chrY 6277092 6277214 -45236370 - MLT1F LTR MaLR -27 515 389 1889 127 55 0 chrY 6280957 6281249 -45232335 - AluY SINE Alu -3 308 1 667 107 0 0 chrY 6282775 6282878 -45230706 - L1P3 LINE L1 -622 5532 5430 2134 115 0 0 chrY 6282878 6283188 -45230396 + L1PA6 LINE L1 5836 6148 -6 216 67 0 0 chrY 6283501 6283531 -45230053 + (A)n Simple_repeat Simple_repeat 1 30 0 1937 131 30 10 chrY 6284094 6284392 -45229192 - AluY SINE Alu -7 304 1 26 30 0 0 chrY 6285029 6285062 -45228522 + AT_rich Low_complexity Low_complexity 1 33 0 21 36 0 0 chrY 6285312 6285340 -45228244 + AT_rich Low_complexity Low_complexity 1 28 0 223 147 44 0 chrY 6286718 6286786 -45226798 + (TAGA)n Simple_repeat Simple_repeat 4 74 0 447 240 62 10 chrY 6287070 6287183 -45226401 + AluJo SINE Alu 11 117 -195 186 43 0 0 chrY 6287183 6287206 -45226378 + (TTAA)n Simple_repeat Simple_repeat 1 23 0 447 240 62 10 chrY 6287206 6287326 -45226258 + AluJo SINE Alu 117 289 -23 181 182 68 0 chrY 6287865 6287909 -45225675 + L2 LINE L2 3263 3309 -4 23 0 0 0 chrY 6288498 6288521 -45225063 + AT_rich Low_complexity Low_complexity 1 23 0 1677 87 138 255 chrY 6288569 6289201 -45224383 + LTR12 LTR ERV1 1 558 -156 5918 138 21 1 chrY 6289215 6290186 -45223398 + HERV9 LTR ERV1 2 991 -7408 25398 119 5 8 chrY 6290193 6294339 -45219245 + HERV9 LTR ERV1 1164 5418 -2981 17412 102 8 14 chrY 6294314 6297007 -45216577 + HERV9 LTR ERV1 5724 8399 0 * 1301 150 74 28 chrY 6297007 6297380 -45216204 + LTR12 LTR ERV1 1 2028 -410 275 277 11 0 chrY 6297381 6297475 -45216109 + LTR30 LTR ERV1 548 642 -80 1335 138 45 0 chrY 6297477 6297701 -45215883 + LTR12 LTR ERV1 481 714 0 2095 179 52 107 chrY 6297702 6298376 -45215208 + LTR1 LTR ERV1 45 681 -104 227 301 46 57 chrY 6299303 6299585 -45213999 + SST1 Satellite centromeric 132 410 -1153 266 271 0 0 chrY 6300249 6300319 -45213265 + SST1 Satellite centromeric 1148 1217 -346 6182 186 5 6 chrY 6300400 6301562 -45212022 + HERVE LTR ERV1 4376 5536 -2277 255 309 44 40 chrY 6302097 6302346 -45211238 + SST1 Satellite centromeric 352 601 -962 224 328 0 0 chrY 6303641 6303705 -45209879 + GA-rich Low_complexity Low_complexity 6 69 0 8191 134 22 6 chrY 6304661 6306046 -45207538 + HERVK14C LTR ERVK 376 1777 -5640 4457 130 12 5 chrY 6306023 6306693 -45206891 + HERVK14C LTR ERVK 1880 2554 -4863 * 15457 102 5 3 chrY 6306674 6308799 -45204785 + HERVK14C LTR ERVK 5289 7417 0 4230 109 3 0 chrY 6308799 6309384 -45204200 + LTR14C LTR ERVK 1 587 0 337 306 56 59 chrY 6311671 6311995 -45201589 + SST1 Satellite centromeric 207 529 -1034 270 296 92 28 chrY 6312779 6312921 -45200663 + SST1 Satellite centromeric 1386 1536 -27 214 254 28 0 chrY 6312926 6312997 -45200587 + (TG)n Simple_repeat Simple_repeat 2 74 0 254 279 0 0 chrY 6315007 6315068 -45198516 + SST1 Satellite centromeric 1157 1217 -346 189 132 0 0 chrY 6315435 6315473 -45198111 + (TG)n Simple_repeat Simple_repeat 1 38 0 288 336 35 38 chrY 6316707 6316996 -45196588 + SST1 Satellite centromeric 314 601 -962 295 341 68 51 chrY 6317457 6317871 -45195713 + SST1 Satellite centromeric 1132 1552 -11 22 0 0 0 chrY 6318454 6318476 -45195108 + AT_rich Low_complexity Low_complexity 1 22 0 2022 36 4 8 chrY 6319257 6319506 -45194078 + L1PA2 LINE L1 5907 6154 -1 291 293 37 52 chrY 6319545 6319736 -45193848 + SST1 Satellite centromeric 414 601 -962 4365 105 108 2 chrY 6319923 6320563 -45193021 - LTR12 LTR ERV1 -6 708 1 229 225 0 0 chrY 6320893 6320933 -45192651 + SST1 Satellite centromeric 1162 1201 -362 303 71 0 0 chrY 6321424 6321466 -45192118 + (TTTA)n Simple_repeat Simple_repeat 4 45 0 243 125 0 0 chrY 6321689 6321729 -45191855 + (CA)n Simple_repeat Simple_repeat 1 40 0 266 301 98 26 chrY 6321767 6321920 -45191664 - SST1 Satellite centromeric -26 1537 1374 305 291 78 76 chrY 6322624 6323085 -45190499 - SST1 Satellite centromeric -962 601 140 195 114 0 0 chrY 6324160 6324195 -45189389 + (CA)n Simple_repeat Simple_repeat 2 36 0 246 348 0 0 chrY 6324552 6324644 -45188940 - SST1 Satellite centromeric -324 1239 1148 463 330 55 39 chrY 6325124 6325688 -45187896 - SST1 Satellite centromeric -962 601 29 286 85 34 0 chrY 6326413 6326472 -45187112 + T-rich Low_complexity Low_complexity 97 157 0 303 326 59 39 chrY 6327634 6328021 -45185563 - SST1 Satellite centromeric -962 601 207 225 0 0 0 chrY 6328933 6328958 -45184626 + (T)n Simple_repeat Simple_repeat 1 25 0 246 95 0 0 chrY 6329156 6329198 -45184386 + (CA)n Simple_repeat Simple_repeat 1 42 0 225 259 101 58 chrY 6329247 6329386 -45184198 - SST1 Satellite centromeric -33 1530 1386 213 121 0 0 chrY 6331544 6331577 -45182007 + (GAA)n Simple_repeat Simple_repeat 2 34 0 249 250 0 0 chrY 6331615 6331687 -45181897 + (CA)n Simple_repeat Simple_repeat 1 72 0 305 315 68 14 chrY 6331720 6331866 -45181718 - SST1 Satellite centromeric -25 1538 1385 352 296 88 33 chrY 6332606 6332846 -45180738 - SST1 Satellite centromeric -962 601 349 204 143 0 0 chrY 6334112 6334154 -45179430 + (CA)n Simple_repeat Simple_repeat 1 42 0 386 296 92 50 chrY 6335034 6335392 -45178192 - SST1 Satellite centromeric -962 601 229 214 247 14 0 chrY 6336559 6336632 -45176952 + (CA)n Simple_repeat Simple_repeat 1 74 0 258 291 86 91 chrY 6336634 6337019 -45176565 - SST1 Satellite centromeric -25 1538 1156 360 237 36 57 chrY 6337514 6337708 -45175876 - SST1 Satellite centromeric -962 601 412 1613 104 0 0 chrY 6337733 6337954 -45175630 - AluY SINE Alu -90 221 1 929 184 70 0 chrY 6338158 6338386 -45175198 - MER33 DNA MER1_type -54 270 27 232 309 129 17 chrY 6338405 6338583 -45175001 - L1ME4a LINE L1 -40 6081 5884 359 266 94 52 chrY 6338913 6339105 -45174479 - L1MC4 LINE L1 -1 8041 7842 408 79 71 32 chrY 6341460 6341586 -45171998 + (TTATA)n Simple_repeat Simple_repeat 5 135 0 311 238 0 0 chrY 6341601 6341664 -45171920 - L1MC4 LINE L1 -1344 6698 6636 415 100 73 0 chrY 6341728 6341838 -45171746 + (TA)n Simple_repeat Simple_repeat 1 118 0 307 208 14 42 chrY 6341843 6341915 -45171669 + L1MCa LINE L1 1996 2065 -4361 315 213 43 64 chrY 6341934 6342028 -45171556 + L1MC4 LINE L1 6612 6703 -1339 653 224 0 0 chrY 6342307 6342423 -45171161 - FLAM_A SINE Alu -17 116 1 1844 146 3 0 chrY 6342543 6342838 -45170746 - AluSq SINE Alu -5 308 13 275 70 0 23 chrY 6343219 6343262 -45170322 + (TTTA)n Simple_repeat Simple_repeat 3 44 0 184 283 22 22 chrY 6343662 6343708 -45169876 - MIR SINE MIR -159 103 58 208 195 49 0 chrY 6344030 6344071 -45169513 + L2 LINE L2 3227 3269 -3 227 302 194 50 chrY 6346528 6346750 -45166834 + MIR SINE MIR 2 255 -7 1333 187 10 49 chrY 6347053 6347229 -45166355 - AluSx SINE Alu -19 293 133 1377 214 7 0 chrY 6347229 6347528 -45166056 - AluSx SINE Alu -11 301 1 1333 187 10 49 chrY 6347528 6347656 -45165928 - AluSx SINE Alu -179 133 1 23 54 0 0 chrY 6347665 6347702 -45165882 + AT_rich Low_complexity Low_complexity 1 37 0 1521 144 128 4 chrY 6347963 6348220 -45165364 - AluSg SINE Alu -9 291 3 333 0 0 0 chrY 6348222 6348231 -45165353 + (TG)n Simple_repeat Simple_repeat 1 46 0 333 0 0 0 chrY 6348231 6348268 -45165316 + (TG)n Simple_repeat Simple_repeat 2 38 0 1278 156 0 36 chrY 6348601 6348826 -45164758 - AluSx SINE Alu -95 217 1 995 251 67 16 chrY 6349450 6350062 -45163522 - L1MC/D LINE L1 -748 5398 4924 253 287 63 21 chrY 6350118 6350261 -45163323 + TAR1 Satellite telomeric 309 457 -1654 235 338 110 0 chrY 6350338 6350483 -45163101 + TAR1 Satellite telomeric 1765 1925 -186 4511 131 135 0 chrY 6351592 6352320 -45161264 + LTR12 LTR ERV1 1 826 0 15151 145 24 47 chrY 6352344 6354730 -45158854 + HERV9 LTR ERV1 58 2496 -5761 360 0 0 0 chrY 6354730 6354770 -45158814 + (TTA)n Simple_repeat Simple_repeat 1 40 0 474 165 25 0 chrY 6354772 6354851 -45158733 - AluYb8 SINE Alu -26 292 212 15151 145 24 47 chrY 6354851 6355512 -45158072 + HERV9 LTR ERV1 2497 3132 -5125 2178 129 0 0 chrY 6556991 6557285 -44956299 + AluSg SINE Alu 1 294 -16 315 233 105 0 chrY 6557903 6557989 -44955595 - MER5B DNA MER1_type -1 177 83 216 0 0 0 chrY 6558320 6558344 -44955240 + (A)n Simple_repeat Simple_repeat 1 24 0 356 238 67 0 chrY 6558710 6558815 -44954769 + MIR SINE MIR 125 236 -26 2347 105 0 0 chrY 6558861 6559156 -44954428 - AluSx SINE Alu -17 295 1 361 209 107 45 chrY 6561227 6561404 -44952180 - L1 LINE L1 -1400 4746 4559 27 73 0 0 chrY 6563349 6563404 -44950180 + AT_rich Low_complexity Low_complexity 1 55 0 21 71 0 0 chrY 6563753 6563795 -44949789 + AT_rich Low_complexity Low_complexity 1 42 0 202 224 40 132 chrY 6564877 6564980 -44948604 + L2 LINE L2 2321 2407 -907 1466 223 7 7 chrY 6564980 6565276 -44948308 + AluSx SINE Alu 3 298 -4 202 224 40 132 chrY 6565276 6565324 -44948260 + L2 LINE L2 2407 2458 -856 1385 148 68 30 chrY 6565325 6565588 -44947996 + AluSx SINE Alu 1 273 -39 2307 136 6 0 chrY 6565736 6566089 -44947495 - THE1A LTR MaLR 0 355 1 348 191 16 40 chrY 6566855 6566981 -44946603 + (TA)n Simple_repeat Simple_repeat 1 123 0 245 251 61 75 chrY 6566984 6567279 -44946305 - L1 LINE L1 -2739 3407 3117 408 153 56 0 chrY 6567533 6567605 -44945979 + AluSc SINE Alu 192 267 -32 234 0 0 0 chrY 6567617 6567643 -44945941 + (CAAAA)n Simple_repeat Simple_repeat 2 27 0 1353 189 27 34 chrY 6568918 6569188 -44944396 + AluSg SINE Alu 6 275 -35 192 77 0 0 chrY 6569188 6569214 -44944370 + (CA)n Simple_repeat Simple_repeat 2 27 0 1353 189 27 34 chrY 6569214 6569240 -44944344 + AluSg SINE Alu 275 300 -10 419 212 8 61 chrY 6571032 6571136 -44942448 + AluSg/x SINE Alu 183 280 -30 291 28 0 0 chrY 6571136 6571172 -44942412 + (CA)n Simple_repeat Simple_repeat 2 37 0 419 212 8 61 chrY 6571172 6571199 -44942385 + AluSg/x SINE Alu 280 307 -3 369 0 0 0 chrY 6571241 6571282 -44942302 + (CA)n Simple_repeat Simple_repeat 2 42 0 186 156 0 0 chrY 6578380 6578425 -44935159 + (TG)n Simple_repeat Simple_repeat 2 46 0 873 268 52 7 chrY 6581724 6581893 -44931691 - AluJb SINE Alu -2 300 111 252 0 0 0 chrY 6581893 6581921 -44931663 + (TTAA)n Simple_repeat Simple_repeat 4 31 0 873 268 52 7 chrY 6581921 6582038 -44931546 - AluJb SINE Alu -191 111 1 2612 254 66 39 chrY 6582345 6583179 -44930405 - L1MA8 LINE L1 0 6291 5481 207 0 0 0 chrY 6583179 6583202 -44930382 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 2612 254 66 39 chrY 6583202 6584060 -44929524 - L1MA8 LINE L1 -810 5481 4559 1958 171 0 0 chrY 6587640 6587944 -44925640 + AluSx SINE Alu 1 304 -8 1554 149 58 45 chrY 6587989 6588297 -44925287 + AluSx SINE Alu 1 312 0 2404 128 8 0 chrY 6588403 6588755 -44924829 - THE1A LTR MaLR 0 355 1 384 284 129 46 chrY 6589240 6589758 -44923826 - L1M4 LINE L1 -2410 3736 3176 1553 298 39 35 chrY 6589995 6590531 -44923053 - HAL1 LINE L1 -462 2045 1503 2031 116 3 63 chrY 6590531 6590850 -44922734 - AluSp SINE Alu -13 300 1 1553 298 39 35 chrY 6590850 6591139 -44922445 - HAL1 LINE L1 -1004 1503 1217 1788 150 0 4 chrY 6591531 6591835 -44921749 + AluSc SINE Alu 7 309 0 430 324 6 39 chrY 6592102 6592284 -44921300 + MER5B DNA MER1_type 2 177 -1 1868 149 4 0 chrY 6592379 6592696 -44920888 - AluSg SINE Alu 0 318 1 23 33 0 0 chrY 6592699 6592729 -44920855 + AT_rich Low_complexity Low_complexity 1 30 0 1474 170 3 63 chrY 6592732 6593032 -44920552 + AluJb SINE Alu 2 283 -29 261 0 0 0 chrY 6593040 6593069 -44920515 + (TG)n Simple_repeat Simple_repeat 2 30 0 399 127 0 0 chrY 6593069 6593132 -44920452 + (CATATA)n Simple_repeat Simple_repeat 4 66 0 321 26 0 0 chrY 6593155 6593193 -44920391 + (CA)n Simple_repeat Simple_repeat 1 38 0 189 0 0 0 chrY 6593409 6593430 -44920154 + (T)n Simple_repeat Simple_repeat 1 21 0 1359 165 4 17 chrY 6593697 6593933 -44919651 + AluSg SINE Alu 59 291 -19 4493 309 39 17 chrY 6593933 6596000 -44917584 - MER52-int LTR ERV1 -44 8875 6725 7979 282 31 16 chrY 6596006 6598305 -44915279 - MER52-int LTR ERV1 -668 6423 4122 1595 283 29 11 chrY 6598312 6598761 -44914823 - MER52-int LTR ERV1 -3419 3672 3216 * 1910 287 36 33 chrY 6598759 6599960 -44913624 + LTR25-int LTR ERV1 1650 2791 -4270 4815 34 0 0 chrY 6599960 6600528 -44913056 - L1P LINE L1 -1733 4413 3846 7961 18 1 0 chrY 6600528 6601689 -44911895 + L1PA2 LINE L1 4994 6155 0 1152 331 24 27 chrY 6601691 6602105 -44911479 + LTR25-int LTR ERV1 2778 3190 -5729 1522 265 32 24 chrY 6602105 6602474 -44911110 + LTR25 LTR ERV1 1 376 -418 234 0 0 0 chrY 6602474 6602500 -44911084 + (TTG)n Simple_repeat Simple_repeat 2 27 0 1522 265 32 24 chrY 6602500 6602594 -44910990 + LTR25 LTR ERV1 376 468 -326 742 199 175 0 chrY 6602634 6602805 -44910779 + LTR25 LTR ERV1 408 608 -186 3775 213 34 29 chrY 6602805 6602913 -44910671 + LTR25-int LTR ERV1 1249 1355 -5850 1466 177 32 0 chrY 6602913 6603161 -44910423 + AluSx SINE Alu 30 285 -27 255 31 0 0 chrY 6603161 6603193 -44910391 + (CA)n Simple_repeat Simple_repeat 2 33 0 3775 213 34 29 chrY 6603193 6603426 -44910158 + LTR25-int LTR ERV1 1355 1585 -5620 1527 158 115 0 chrY 6603426 6603686 -44909898 + AluSg1 SINE Alu 2 291 -18 3775 213 34 29 chrY 6603686 6604398 -44909186 + LTR25-int LTR ERV1 1585 4645 -2560 565 121 0 0 chrY 6604411 6604494 -44909090 + AluSc SINE Alu 1 83 -226 * 713 160 40 0 chrY 6604488 6604613 -44908971 + Alu SINE Alu 176 305 -6 3553 220 53 49 chrY 6604624 6605641 -44907943 + LTR25-int LTR ERV1 2212 3223 -3773 2050 133 0 41 chrY 6605641 6605958 -44907626 + AluSq SINE Alu 1 304 -9 3553 220 53 49 chrY 6605958 6606995 -44906589 + LTR25-int LTR ERV1 3223 6996 0 2122 254 5 93 chrY 6606995 6607794 -44905790 + LTR25 LTR ERV1 1 729 -65 192 97 0 0 chrY 6607798 6607829 -44905755 + (TG)n Simple_repeat Simple_repeat 2 32 0 243 232 0 14 chrY 6607833 6607902 -44905682 - L1MC4 LINE L1 -1339 6703 6636 780 249 27 22 chrY 6608031 6608256 -44905328 - LTR25-int LTR ERV1 -6228 2691 2466 1454 289 49 56 chrY 6608362 6609039 -44904545 - LTR25-int LTR ERV1 -6489 2430 1759 2534 228 17 47 chrY 6609119 6609764 -44903820 - LTR25-int LTR ERV1 0 6996 6333 1404 167 130 4 chrY 6609764 6610033 -44903551 + AluSp SINE Alu 1 303 0 2534 228 17 47 chrY 6610033 6610382 -44903202 - LTR25-int LTR ERV1 -663 6333 3314 2239 265 88 51 chrY 6610401 6610529 -44903055 - LTR25-int LTR ERV1 -1355 5736 5614 1859 146 0 34 chrY 6610529 6610823 -44902761 - AluSc SINE Alu -25 284 1 2239 265 88 51 chrY 6610823 6611614 -44901970 - LTR25-int LTR ERV1 -1477 5614 4783 3303 126 10 6 chrY 6611614 6612123 -44901461 - MER9 LTR ERVK 0 511 1 14832 94 7 29 chrY 6612125 6614378 -44899206 - HERVK9 LTR ERVK -3 5913 3711 16550 107 15 15 chrY 6614378 6616665 -44896919 - HERVK9 LTR ERVK -3130 2786 395 183 321 75 19 chrY 6616665 6616771 -44896813 - L3 LINE CR1 -28 1549 1438 16550 107 15 15 chrY 6616771 6617166 -44896418 - HERVK9 LTR ERVK -5521 395 1 3218 152 0 2 chrY 6617166 6617678 -44895906 - MER9 LTR ERVK 0 511 1 6102 287 21 50 chrY 6617678 6619849 -44893735 - LTR25-int LTR ERV1 -2303 4788 2682 2607 219 28 96 chrY 6619854 6620706 -44892878 + LTR25 LTR ERV1 1 794 0 2793 262 46 41 chrY 6620807 6621450 -44892134 + HUERS-P3 LTR ERV1 252 905 -6091 1785 173 6 13 chrY 6621450 6621763 -44891821 - AluSq SINE Alu -2 311 1 2793 262 46 41 chrY 6621763 6622227 -44891357 + HUERS-P3 LTR ERV1 905 1365 -5631 3153 271 73 47 chrY 6622284 6622564 -44891020 + HUERS-P3 LTR ERV1 1480 1751 -5496 1283 208 93 11 chrY 6622564 6622824 -44890760 + AluSx SINE Alu 1 285 -27 204 111 0 0 chrY 6622824 6622860 -44890724 + (CATATA)n Simple_repeat Simple_repeat 4 39 0 3153 271 73 47 chrY 6622868 6623405 -44890179 + HUERS-P3 LTR ERV1 1751 2273 -4974 189 0 0 0 chrY 6623405 6623426 -44890158 + (CTG)n Simple_repeat Simple_repeat 1 21 0 3153 271 73 47 chrY 6623426 6624221 -44889363 + HUERS-P3 LTR ERV1 2273 3030 -4217 7011 268 37 39 chrY 6624269 6625825 -44887759 - LTR25-int LTR ERV1 -4336 2660 1112 1867 183 3 0 chrY 6625825 6626125 -44887459 + AluSg SINE Alu 1 301 -9 7011 268 37 39 chrY 6626125 6627233 -44886351 - LTR25-int LTR ERV1 -5884 1112 3 722 282 106 12 chrY 6627255 6627595 -44885989 - LTR25 LTR ERV1 -2 792 421 1495 309 22 2 chrY 6627714 6628260 -44885324 + HUERS-P3 LTR ERV1 2512 3045 -4300 1295 244 48 0 chrY 6628287 6628643 -44884941 - LTR25 LTR ERV1 0 794 422 270 185 0 0 chrY 6628644 6628698 -44884886 - LTR25 LTR ERV1 -260 534 481 * 1306 257 68 55 chrY 6628690 6629365 -44884219 - LTR25 LTR ERV1 -51 743 32 227 241 149 0 chrY 6629440 6629527 -44884057 - Tigger4(Zombi) DNA MER2_type -2631 100 1 535 280 147 0 chrY 6629655 6629866 -44883718 + MER21B LTR ERV1 1 242 -621 3012 279 128 85 chrY 6629868 6631367 -44882217 + MER52A LTR ERV1 4 1567 -188 565 225 8 0 chrY 6631384 6631504 -44882080 + MER21B LTR ERV1 236 356 -507 3736 264 107 25 chrY 6634379 6636394 -44877190 - L1M4c LINE L1 -4179 2205 25 22 0 0 0 chrY 6636550 6636572 -44877012 + AT_rich Low_complexity Low_complexity 1 22 0 25 51 0 0 chrY 6636602 6636641 -44876943 + AT_rich Low_complexity Low_complexity 1 39 0 711 301 138 12 chrY 6636862 6637747 -44875837 - L1M4c LINE L1 -4662 1984 989 268 333 39 26 chrY 6637851 6638004 -44875580 - L1M4c LINE L1 -5773 769 615 398 339 60 39 chrY 6638806 6639061 -44874523 - L2 LINE L2 -280 3033 2763 253 245 0 0 chrY 6639095 6639148 -44874436 + MER20 DNA MER1_type 93 145 -74 180 77 0 0 chrY 6640427 6640453 -44873131 + (TTA)n Simple_repeat Simple_repeat 2 27 0 180 179 0 0 chrY 6640939 6640978 -44872606 + (TA)n Simple_repeat Simple_repeat 1 39 0 1720 164 59 16 chrY 6641006 6641379 -44872205 - MLT2A1 LTR ERVL -44 400 12 21831 140 9 17 chrY 6641386 6641716 -44871868 - HERVL-A1-A1 LTR ERVL -1 5653 5322 2678 16 0 7 chrY 6641716 6642020 -44871564 + AluY SINE Alu 1 302 -9 21831 140 9 17 chrY 6642020 6645373 -44868211 - HERVL-A1-A1 LTR ERVL -332 5322 1998 10812 147 11 9 chrY 6645378 6647214 -44866370 - HERVL-A1-A1 LTR ERVL -3814 1840 1 2190 147 62 14 chrY 6647216 6647638 -44865946 - MLT2A1 LTR ERVL -2 442 1 296 259 12 0 chrY 6647638 6647719 -44865865 + MER52A LTR ERV1 680 761 -994 51 65 0 0 chrY 6647764 6647857 -44865727 + AT_rich Low_complexity Low_complexity 1 93 0 484 258 61 42 chrY 6647860 6648073 -44865511 + MER52A LTR ERV1 825 1041 -714 * 3222 270 36 12 chrY 6648051 6649045 -44864539 + MER52A LTR ERV1 880 1755 0 213 132 0 0 chrY 6649130 6649168 -44864416 + (TAGA)n Simple_repeat Simple_repeat 4 41 0 261 57 0 0 chrY 6649168 6649203 -44864381 + (TG)n Simple_repeat Simple_repeat 2 36 0 1647 203 0 0 chrY 6649203 6649479 -44864105 - AluSg SINE Alu -34 276 1 3415 199 23 23 chrY 6650142 6650920 -44862664 + L1PA10 LINE L1 5388 6165 -3 866 205 0 0 chrY 6650987 6651143 -44862441 - AluSc SINE Alu -15 294 139 21 0 0 0 chrY 6651153 6651174 -44862410 + AT_rich Low_complexity Low_complexity 1 21 0 871 280 94 4 chrY 6651239 6651514 -44862070 - AluSx SINE Alu -1 301 2 22 35 0 0 chrY 6651554 6651583 -44862001 + AT_rich Low_complexity Low_complexity 1 29 0 21 0 0 0 chrY 6652807 6652828 -44860756 + AT_rich Low_complexity Low_complexity 1 21 0 377 303 156 19 chrY 6653172 6653383 -44860201 - L1MC4a LINE L1 -1849 5959 5720 887 119 179 12 chrY 6653664 6653832 -44859752 + pTR5 LTR ERV1 1830 2025 -413 364 194 41 31 chrY 6653832 6653930 -44859654 + LTR30 LTR ERV1 544 642 -80 1517 108 0 5 chrY 6653933 6654155 -44859429 + pTR5 LTR ERV1 172 392 -2046 2874 169 78 0 chrY 6654156 6654658 -44858926 + THE1B-int LTR MaLR 1040 1580 0 1524 170 94 26 chrY 6654658 6654999 -44858585 + THE1B LTR MaLR 1 364 0 554 258 26 26 chrY 6655243 6655394 -44858190 - AluJo SINE Alu -30 282 132 443 294 8 8 chrY 6655418 6655544 -44858040 - AluJo SINE Alu -175 127 2 336 358 8 0 chrY 6655558 6655681 -44857903 - AluJ SINE Alu -178 124 1 21 36 0 0 chrY 6655885 6655913 -44857671 + AT_rich Low_complexity Low_complexity 1 28 0 23 0 0 0 chrY 6656264 6656287 -44857297 + AT_rich Low_complexity Low_complexity 1 23 0 2070 128 3 3 chrY 6656938 6657236 -44856348 + AluY SINE Alu 1 298 -13 1646 156 14 21 chrY 6657518 6657807 -44855777 + AluSc SINE Alu 1 287 -22 717 265 29 5 chrY 6657927 6658131 -44855453 + MER2 DNA MER2_type 2 210 -135 255 259 62 0 chrY 6658394 6658475 -44855109 - MIR SINE MIR 0 262 177 1452 146 0 0 chrY 6658479 6658698 -44854886 - AluSq SINE Alu -14 299 81 1811 122 3 53 chrY 6658765 6659068 -44854516 + AluY SINE Alu 1 288 -23 1184 101 0 6 chrY 6659072 6659251 -44854333 + (GGAAA)n Simple_repeat Simple_repeat 3 180 0 414 232 0 0 chrY 6660167 6660236 -44853348 - FRAM SINE Alu -35 131 63 2386 216 11 2 chrY 6660240 6660708 -44852876 + MER1A DNA MER1_type 19 490 -39 8886 34 1 0 chrY 6660708 6661783 -44851801 - L1PA2 LINE L1 -1333 4813 3738 7686 24 0 0 chrY 6661783 6663126 -44850458 + L1PA2 LINE L1 4810 6153 -2 1867 134 69 0 chrY 6663134 6663410 -44850174 + AluSq SINE Alu 1 295 -18 237 158 0 0 chrY 6663585 6663623 -44849961 + MER1A DNA MER1_type 479 516 -17 814 278 102 4 chrY 6664302 6664547 -44849037 - AluSq SINE Alu -44 269 1 24 85 0 0 chrY 6664640 6664699 -44848885 + AT_rich Low_complexity Low_complexity 1 59 0 461 253 0 0 chrY 6664943 6665038 -44848546 - AluJb SINE Alu -131 181 87 249 239 92 18 chrY 6665047 6665156 -44848428 + L1MC5 LINE L1 7656 7772 -189 22 35 0 0 chrY 6665203 6665232 -44848352 + AT_rich Low_complexity Low_complexity 1 29 0 1930 134 0 36 chrY 6666883 6667189 -44846395 - AluY SINE Alu -15 296 2 22 0 0 0 chrY 6667717 6667739 -44845845 + AT_rich Low_complexity Low_complexity 1 22 0 227 170 0 0 chrY 6668800 6668847 -44844737 + LTR66 LTR ERVL 393 439 -171 262 261 0 22 chrY 6668857 6668949 -44844635 + L1MC4 LINE L1 6614 6703 -1339 1926 108 35 3 chrY 6668950 6669238 -44844346 - AluY SINE Alu -14 297 1 2609 61 0 0 chrY 6669349 6669660 -44843924 + AluY SINE Alu 1 311 0 435 151 8 17 chrY 6669668 6669787 -44843797 + (TA)n Simple_repeat Simple_repeat 2 119 0 285 223 43 11 chrY 6669813 6669907 -44843677 + L1MC4 LINE L1 6608 6704 -1338 23 0 0 0 chrY 6670563 6670586 -44842998 + AT_rich Low_complexity Low_complexity 1 23 0 30 77 0 0 chrY 6671244 6671309 -44842275 + AT_rich Low_complexity Low_complexity 1 65 0 860 249 144 4 chrY 6671414 6671671 -44841913 + AluSg SINE Alu 7 299 -11 23 33 0 0 chrY 6671782 6671812 -44841772 + AT_rich Low_complexity Low_complexity 1 30 0 3467 211 24 14 chrY 6671814 6672574 -44841010 - L1PA10 LINE L1 -1 6167 5401 1602 177 3 31 chrY 6672623 6672911 -44840673 - AluSq SINE Alu -23 290 11 286 130 87 76 chrY 6673102 6673194 -44840390 + MER20 DNA MER1_type 127 219 0 2375 288 45 0 chrY 6673464 6674038 -44839546 - MER52A LTR ERV1 0 1755 1156 1094 132 6 0 chrY 6674038 6674205 -44839379 + ERVL-A1 LTR ERVL 714 881 -4773 2228 160 46 64 chrY 6674205 6674705 -44838879 - LTR22B LTR ERVK 0 492 2 5065 151 14 20 chrY 6674706 6675514 -44838070 - HERVK22 LTR ERVK 0 6837 6033 7932 87 3 8 chrY 6675514 6676591 -44836993 - MER11C LTR ERVK 0 1071 1 5065 151 14 20 chrY 6676591 6676632 -44836952 - HERVK22 LTR ERVK -804 6033 5993 30494 139 25 18 chrY 6676660 6676735 -44836849 - HERVK22 LTR ERVK -951 5886 5813 2021 128 0 4 chrY 6676735 6677016 -44836568 - AluY SINE Alu -29 282 3 30494 139 25 18 chrY 6677016 6681879 -44831705 - HERVK22 LTR ERVK -1024 5813 911 2709 195 2 6 chrY 6681886 6682373 -44831211 - HERVK22 LTR ERVK -6345 492 8 2414 164 41 31 chrY 6682381 6682868 -44830716 - LTR22B LTR ERVK 0 492 1 14023 195 26 7 chrY 6682868 6686069 -44827515 + ERVL-A1 LTR ERVL 876 4613 -1151 4596 135 19 26 chrY 6686081 6686839 -44826745 + ERVL-A1 LTR ERVL 4901 5652 -2 1858 168 63 16 chrY 6686841 6687223 -44826361 + MLT2A1 LTR ERVL 1 400 -44 23 68 0 0 chrY 6687417 6687461 -44826123 + AT_rich Low_complexity Low_complexity 1 44 0 297 228 0 0 chrY 6688202 6688259 -44825325 - MER20 DNA MER1_type -73 146 90 236 357 21 36 chrY 6688316 6688456 -44825128 + L2 LINE L2 2791 2928 -386 24 32 0 0 chrY 6688955 6688986 -44824598 + AT_rich Low_complexity Low_complexity 1 31 0 24 0 0 0 chrY 6689634 6689658 -44823926 + AT_rich Low_complexity Low_complexity 1 24 0 21 36 0 0 chrY 6689726 6689754 -44823830 + AT_rich Low_complexity Low_complexity 1 28 0 286 279 61 35 chrY 6689804 6690001 -44823583 + L1M4c LINE L1 2295 2496 -3888 3454 260 99 40 chrY 6690028 6691736 -44821848 + L1M4c LINE L1 25 1834 -4550 3934 55 2 0 chrY 6691823 6692318 -44821266 - L1PA3 LINE L1 -3 6152 5657 1823 144 0 7 chrY 6692319 6692597 -44820987 - AluY SINE Alu -35 276 1 463 65 0 0 chrY 6692599 6692661 -44820923 - Alu SINE Alu -11 299 238 463 200 11 0 chrY 6692661 6692751 -44820833 - MER21B LTR ERV1 -522 341 251 2878 305 12 20 chrY 6692764 6693604 -44819980 - MER52A LTR ERV1 0 1755 923 630 321 98 4 chrY 6693572 6693837 -44819747 - MER52A LTR ERV1 -659 1096 807 * 332 236 23 23 chrY 6693893 6694207 -44819377 + (CCCTAA)n Simple_repeat Simple_repeat 1 314 0 222 128 0 0 chrY 6694226 6694265 -44819319 + (CCCCAA)n Simple_repeat Simple_repeat 4 42 0 207 182 0 45 chrY 6694403 6694513 -44819071 + (CCCTAA)n Simple_repeat Simple_repeat 5 109 0 336 275 22 34 chrY 6694536 6694714 -44818870 + (CCCTAA)n Simple_repeat Simple_repeat 5 180 0 181 200 16 24 chrY 6694736 6694861 -44818723 + (CCCTAA)n Simple_repeat Simple_repeat 3 126 0 297 182 6 38 chrY 6695053 6695212 -44818372 + (CCCTAA)n Simple_repeat Simple_repeat 5 158 0 294 149 0 64 chrY 6695534 6695675 -44817909 + (CCCTAA)n Simple_repeat Simple_repeat 1 132 0 245 195 17 17 chrY 6695690 6695808 -44817776 + (CCCTAA)n Simple_repeat Simple_repeat 3 120 0 371 183 0 39 chrY 6695819 6696085 -44817499 + (CCCTAA)n Simple_repeat Simple_repeat 1 255 0 485 172 24 18 chrY 6696149 6696318 -44817266 + (CCCTAA)n Simple_repeat Simple_repeat 6 175 0 631 327 57 17 chrY 6696506 6697106 -44816478 + L1M4 LINE L1 3676 4299 -1847 30 45 0 0 chrY 6697617 6697661 -44815923 + AT_rich Low_complexity Low_complexity 1 44 0 1915 142 10 0 chrY 6697673 6697962 -44815622 - AluY SINE Alu -19 292 1 21 0 0 0 chrY 6698048 6698069 -44815515 + AT_rich Low_complexity Low_complexity 1 21 0 683 168 147 19 chrY 6698331 6698522 -44815062 + AluJb SINE Alu 19 289 -23 1867 160 0 7 chrY 6698584 6698908 -44814676 + AluSx SINE Alu 1 312 0 472 268 33 13 chrY 6699155 6699308 -44814276 + FRAM SINE Alu 5 160 -16 2107 229 92 46 chrY 6699332 6700259 -44813325 + L1M4 LINE L1 4421 5389 -757 233 340 90 33 chrY 6701523 6701735 -44811849 - TAR1 Satellite telomeric -123 1988 1765 654 245 86 27 chrY 6702113 6702494 -44811090 + L1MC/D LINE L1 5155 5556 -743 985 186 0 11 chrY 6702494 6702677 -44810907 + MER34C LTR ERV1 38 218 -367 518 214 7 0 chrY 6702683 6702828 -44810756 + CT-rich Low_complexity Low_complexity 2 147 0 1421 198 4 8 chrY 6702846 6703109 -44810475 - AluSg SINE Alu -33 277 16 241 217 67 0 chrY 6703127 6703187 -44810397 + MER34C LTR ERV1 211 274 -311 552 216 0 0 chrY 6703187 6703289 -44810295 - MLT2B3 LTR ERVL -452 102 1 1113 247 25 25 chrY 6703289 6703722 -44809862 + MER31-int LTR ERV1 1062 1494 -3442 299 195 121 116 chrY 6703880 6703920 -44809664 + MER31-int LTR ERV1 1808 1846 -3090 1900 143 40 7 chrY 6703920 6704221 -44809363 - AluSq SINE Alu 0 313 3 299 195 121 116 chrY 6704221 6704395 -44809189 + MER31-int LTR ERV1 1846 2023 -2913 3319 142 0 21 chrY 6704398 6704918 -44808666 + MER9 LTR ERVK 3 511 0 12202 93 40 2 chrY 6704918 6706578 -44807006 + HERVK9 LTR ERVK 1 1723 -4193 6658 132 10 25 chrY 6706580 6707651 -44805933 + MER11C LTR ERVK 3 1057 -14 4220 83 2 0 chrY 6707690 6708234 -44805350 + HERVK9 LTR ERVK 1718 2262 -3654 2861 59 6 0 chrY 6708234 6708591 -44804993 + HERVK9 LTR ERVK 2428 2786 -3130 13695 98 11 28 chrY 6708591 6710548 -44803036 + HERVK9 LTR ERVK 3711 5635 -281 2192 130 14 13 chrY 6710572 6710923 -44802661 + HERVK9 LTR ERVK 5635 5913 -3 3369 139 0 10 chrY 6710925 6711441 -44802143 + MER9 LTR ERVK 1 511 0 646 269 40 45 chrY 6711450 6711803 -44801781 + MER31-int LTR ERV1 2939 3289 -1647 836 247 63 26 chrY 6711888 6712159 -44801425 + MER31-int LTR ERV1 3342 3622 -1314 2502 154 26 100 chrY 6712159 6712812 -44800772 + MER4B LTR ERV1 4 779 0 265 178 59 69 chrY 6712822 6712923 -44800661 + MER31-int LTR ERV1 3623 3722 -1214 1937 264 79 14 chrY 6713015 6713900 -44799684 - L1M4 LINE L1 -698 5486 4559 21 0 0 0 chrY 6715433 6715454 -44798130 + AT_rich Low_complexity Low_complexity 1 21 0 182 277 59 30 chrY 6717266 6717367 -44796217 + L2 LINE L2 2321 2424 -890 1726 183 7 0 chrY 6717369 6717658 -44795926 + AluSx SINE Alu 3 293 -19 1648 184 0 19 chrY 6717693 6718009 -44795575 + AluSx SINE Alu 1 310 -2 2123 163 14 0 chrY 6718114 6718464 -44795120 - THE1A LTR MaLR 0 355 1 233 284 114 49 chrY 6718932 6719519 -44794065 - L1M4 LINE L1 -2401 3745 3121 307 322 9 0 chrY 6719558 6719673 -44793911 - L1M4 LINE L1 -3124 3022 2907 1916 291 34 23 chrY 6719696 6720228 -44793356 - HAL1 LINE L1 -458 2049 1503 1821 132 7 65 chrY 6720228 6720538 -44793046 - AluSp SINE Alu -21 292 1 1916 291 34 23 chrY 6720538 6720829 -44792755 - HAL1 LINE L1 -1004 1503 1217 205 218 128 26 chrY 6721107 6721185 -44792399 - L2 LINE L2 -50 3222 3137 1815 167 3 0 chrY 6721217 6721505 -44792079 + AluY SINE Alu 4 292 -19 1967 147 3 0 chrY 6721984 6722290 -44791294 + AluSp SINE Alu 1 307 -6 381 314 5 64 chrY 6722653 6722841 -44790743 + MER5B DNA MER1_type 2 178 0 1489 211 43 0 chrY 6722940 6723219 -44790365 - AluSg SINE Alu -19 291 1 24 0 0 0 chrY 6723219 6723243 -44790341 + AT_rich Low_complexity Low_complexity 1 24 0 1240 184 7 72 chrY 6723260 6723553 -44790031 + AluJb SINE Alu 7 280 -32 267 183 11 65 chrY 6723559 6723652 -44789932 + L1MC4 LINE L1 6614 6701 -1341 200 100 25 0 chrY 6726337 6726377 -44787207 + (TG)n Simple_repeat Simple_repeat 2 42 0 558 293 57 41 chrY 6727486 6727875 -44785709 + SST1 Satellite centromeric 207 601 -962 250 281 68 20 chrY 6728579 6728725 -44784859 + SST1 Satellite centromeric 1386 1538 -25 210 71 0 0 chrY 6728770 6728798 -44784786 + (TG)n Simple_repeat Simple_repeat 1 28 0 230 274 79 55 chrY 6731165 6731329 -44782255 + SST1 Satellite centromeric 800 967 -596 188 26 0 105 chrY 6731598 6731636 -44781948 + (CA)n Simple_repeat Simple_repeat 1 34 0 255 348 35 31 chrY 6732488 6732775 -44780809 - SST1 Satellite centromeric -962 601 314 208 247 25 0 chrY 6734011 6734092 -44779492 + (CA)n Simple_repeat Simple_repeat 1 83 0 228 86 0 0 chrY 6736478 6736513 -44777071 + (CA)n Simple_repeat Simple_repeat 2 36 0 276 299 0 0 chrY 6736847 6736924 -44776660 - SST1 Satellite centromeric -324 1239 1163 437 300 60 51 chrY 6737405 6737875 -44775709 - SST1 Satellite centromeric -952 611 138 21 0 0 0 chrY 6738414 6738435 -44775149 + AT_rich Low_complexity Low_complexity 1 21 0 4177 111 5 3 chrY 6740058 6740644 -44772940 - LTR14C LTR ERVK 0 587 1 15128 108 13 1 chrY 6740644 6742749 -44770835 - HERVK14C LTR ERVK 0 7417 5289 4512 94 19 5 chrY 6742730 6743359 -44770225 - HERVK14C LTR ERVK -4863 2554 1917 * 11917 122 13 22 chrY 6743351 6745143 -44768441 - HERVK14C LTR ERVK -5640 1777 1 4069 98 3 46 chrY 6745143 6745478 -44768106 - LTR14C LTR ERVK 0 587 288 1902 121 48 0 chrY 6745478 6745751 -44767833 + AluY SINE Alu 1 286 -25 4069 98 3 46 chrY 6745751 6746028 -44767556 - LTR14C LTR ERVK -299 288 1 1662 236 25 25 chrY 6746758 6747207 -44766377 - LTR2 LTR ERV1 0 449 1 9338 214 26 17 chrY 6747207 6749207 -44764377 - Harlequin LTR ERV1 -1 6895 4877 16388 171 6 8 chrY 6749318 6752626 -44760958 - HERVE LTR ERV1 -2016 5797 2507 9877 198 23 14 chrY 6752633 6754907 -44758677 - HERVE LTR ERV1 -5440 2373 1 1574 225 70 16 chrY 6754907 6755131 -44758453 - LTR2 LTR ERV1 0 449 239 183 80 0 0 chrY 6755131 6755156 -44758428 + (CAGAA)n Simple_repeat Simple_repeat 1 25 0 1574 225 70 16 chrY 6755156 6755357 -44758227 - LTR2 LTR ERV1 -210 239 1 200 149 21 0 chrY 6755945 6755992 -44757592 + (CA)n Simple_repeat Simple_repeat 1 48 0 198 0 0 0 chrY 6756247 6756269 -44757315 + (T)n Simple_repeat Simple_repeat 1 22 0 501 279 58 58 chrY 6756924 6757318 -44756266 - SST1 Satellite centromeric -963 600 207 306 269 81 31 chrY 6758166 6758326 -44755258 - SST1 Satellite centromeric -11 1552 1385 235 303 0 0 chrY 6758478 6758554 -44755030 - SST1 Satellite centromeric -325 1238 1163 272 306 68 62 chrY 6759051 6759518 -44754066 - SST1 Satellite centromeric -962 601 132 468 278 69 71 chrY 6760664 6761056 -44752528 - SST1 Satellite centromeric -25 1538 1148 465 271 80 74 chrY 6761524 6762012 -44751572 - SST1 Satellite centromeric -962 601 111 2572 164 29 134 chrY 6762916 6763677 -44749907 - LTR1 LTR ERV1 -104 681 1 284 239 122 94 chrY 6763782 6763962 -44749622 - LTR33A LTR ERVL -275 248 64 464 202 12 0 chrY 6764877 6764961 -44748623 - AluJo SINE Alu -23 289 205 * 657 221 89 13 chrY 6764953 6764997 -44748587 - AluJo SINE Alu -132 180 141 186 43 0 0 chrY 6764997 6765020 -44748564 + (TTAA)n Simple_repeat Simple_repeat 1 23 0 657 221 89 13 chrY 6765020 6765133 -44748451 - AluJo SINE Alu -171 141 11 207 0 0 0 chrY 6765410 6765433 -44748151 + (TA)n Simple_repeat Simple_repeat 1 23 0 360 94 0 0 chrY 6767366 6767419 -44746165 + (TCC)n Simple_repeat Simple_repeat 1 53 0 1684 49 0 0 chrY 6768526 6768731 -44744853 - L1PA2 LINE L1 0 6155 5951 2223 92 9 3 chrY 6768732 6769048 -44744536 - L1PA6 LINE L1 0 6154 5837 756 71 20 0 chrY 6769048 6769147 -44744437 + L1P3 LINE L1 5432 5532 -622 313 263 75 38 chrY 6774399 6774532 -44739052 + MLT1F LTR MaLR 370 507 -35 865 226 5 0 chrY 6775034 6775220 -44738364 + AluSg/x SINE Alu 123 309 -1 1168 196 3 93 chrY 6775260 6775571 -44738013 + AluSg SINE Alu 5 287 -13 183 188 0 0 chrY 6775584 6775632 -44737952 + GA-rich Low_complexity Low_complexity 2 49 0 285 177 11 0 chrY 6775653 6775718 -44737866 - L1MA4 LINE L1 -11 6289 6223 499 279 35 0 chrY 6775720 6775892 -44737692 + L1MA4 LINE L1 5999 6176 -124 230 167 0 121 chrY 6775909 6775939 -44737645 + L1MA3 LINE L1 6152 6171 -134 1260 230 10 30 chrY 6775939 6776243 -44737341 + AluJo SINE Alu 2 299 -13 230 167 0 121 chrY 6776243 6776278 -44737306 + L1MA3 LINE L1 6171 6209 -96 1504 191 4 14 chrY 6776319 6776597 -44736987 - AluSx SINE Alu -35 277 3 257 201 87 57 chrY 6778522 6778725 -44734859 + L1P1 LINE L1 5257 5471 -684 301 91 0 0 chrY 6778728 6778772 -44734812 - L1PA6 LINE L1 -5 6149 6106 512 222 67 39 chrY 6778788 6778968 -44734616 + L1M4 LINE L1 5417 5601 -573 368 213 24 37 chrY 6779122 6779271 -44734313 + L1M4 LINE L1 5284 5423 -755 298 146 0 0 chrY 6779271 6779319 -44734265 - L1PA6 LINE L1 -1 6153 6106 545 225 60 33 chrY 6779333 6779515 -44734069 + L1M4 LINE L1 5415 5601 -577 721 181 33 106 chrY 6779700 6779814 -44733770 + L1M4 LINE L1 5306 5427 -757 309 125 0 0 chrY 6779814 6779862 -44733722 - L1PA6 LINE L1 -1 6153 6106 721 181 33 106 chrY 6779862 6780053 -44733531 + L1M4 LINE L1 5427 5601 -583 322 231 175 7 chrY 6780213 6780356 -44733228 + L1MB5 LINE L1 5254 5420 -746 298 143 0 0 chrY 6780357 6780406 -44733178 - L1PA6 LINE L1 0 6154 6106 1208 254 117 34 chrY 6780420 6781095 -44732489 + L1MB5 LINE L1 5415 6161 -13 805 248 26 26 chrY 6782548 6782778 -44730806 + AluJo SINE Alu 1 230 -82 21 0 0 0 chrY 6783993 6784014 -44729570 + AT_rich Low_complexity Low_complexity 1 21 0 1665 176 0 10 chrY 6784291 6784592 -44728992 - AluSg SINE Alu -12 298 1 1852 142 7 3 chrY 6786593 6786895 -44726689 + AluSc SINE Alu 1 303 -6 207 178 89 0 chrY 6787061 6787106 -44726478 - L2 LINE L2 -12 3260 3212 1838 147 0 26 chrY 6787372 6787685 -44725899 - AluSc SINE Alu -3 306 2 23 78 0 0 chrY 6788973 6789024 -44724560 + AT_rich Low_complexity Low_complexity 1 51 0 324 48 0 0 chrY 6789053 6789095 -44724489 + (CA)n Simple_repeat Simple_repeat 2 43 0 285 149 231 67 chrY 6789537 6789569 -44724015 - L1MA7 LINE L1 -33 6258 6233 865 236 80 22 chrY 6789569 6789845 -44723739 - AluJb SINE Alu -9 293 2 285 149 231 67 chrY 6789845 6789946 -44723638 - L1MA7 LINE L1 -58 6233 6103 382 147 0 44 chrY 6790036 6790104 -44723480 + MER1B DNA MER1_type 211 275 -64 324 182 0 0 chrY 6790261 6790316 -44723268 + MER1B DNA MER1_type 263 317 -16 496 241 9 0 chrY 6790326 6790434 -44723150 - FLAM_C SINE Alu -32 111 3 1941 148 0 0 chrY 6794989 6795272 -44718312 + AluSq SINE Alu 1 283 -30 276 287 17 9 chrY 6795991 6796106 -44717478 + L2 LINE L2 2196 2311 -1003 238 340 38 0 chrY 6798066 6798225 -44715359 + L1M3 LINE L1 5353 5517 -654 23 0 0 0 chrY 6798350 6798373 -44715211 + AT_rich Low_complexity Low_complexity 1 23 0 27 29 0 0 chrY 6798993 6799027 -44714557 + AT_rich Low_complexity Low_complexity 1 34 0 198 0 0 0 chrY 6802843 6802865 -44710719 + (CAGCC)n Simple_repeat Simple_repeat 1 22 0 183 167 0 0 chrY 6804070 6804112 -44709472 + (TGG)n Simple_repeat Simple_repeat 1 42 0 450 75 0 0 chrY 6806638 6806705 -44706879 + (TG)n Simple_repeat Simple_repeat 2 68 0 221 203 0 47 chrY 6808989 6809053 -44704531 + CT-rich Low_complexity Low_complexity 1 61 0 379 326 102 10 chrY 6809158 6809354 -44704230 - L1M4c LINE L1 -5021 1363 1150 907 253 27 54 chrY 6809363 6809659 -44703925 - AluJb SINE Alu -12 300 13 329 320 39 0 chrY 6809772 6809875 -44703709 - L1MCa LINE L1 -4325 2101 1995 * 354 277 0 43 chrY 6809823 6809917 -44703667 + L1MC4 LINE L1 6614 6703 -1339 333 315 0 22 chrY 6809871 6809963 -44703621 - L1MC4 LINE L1 -1339 6703 6614 * 22 0 0 0 chrY 6810045 6810067 -44703517 + AT_rich Low_complexity Low_complexity 1 22 0 1788 255 31 75 chrY 6810103 6811076 -44702508 - L1MA8 LINE L1 0 6291 5371 21 36 0 0 chrY 6861849 6861877 -44651707 + AT_rich Low_complexity Low_complexity 1 28 0 382 268 178 13 chrY 6861920 6862077 -44651507 - L2 LINE L2 -13 3300 3118 357 320 140 30 chrY 6862268 6862640 -44650944 - L2 LINE L2 -1310 2004 1592 837 308 82 6 chrY 6865021 6865339 -44648245 + MER93a LTR ERV1 61 402 0 759 257 123 62 chrY 6865368 6865742 -44647842 + Charlie2 DNA MER1_type 1864 2260 -602 23459 74 6 4 chrY 6865742 6868889 -44644695 - L1PA4 LINE L1 -2906 3240 89 16899 50 2 2 chrY 6868889 6871806 -44641778 + L1PA4 LINE L1 3240 6155 0 1873 154 10 0 chrY 6871811 6871830 -44641754 - AluSp SINE Alu -11 302 285 306 0 0 0 chrY 6871830 6871864 -44641720 + (TG)n Simple_repeat Simple_repeat 1 34 0 1873 154 10 0 chrY 6871864 6872136 -44641448 - AluSp SINE Alu -28 285 8 349 296 22 22 chrY 6872266 6872401 -44641183 + L1ME4a LINE L1 5971 6105 -16 1256 304 96 64 chrY 6873804 6874150 -44639434 - L2 LINE L2 -1177 2137 1804 1290 137 152 41 chrY 6874150 6874420 -44639164 - AluSg SINE Alu 0 300 1 1256 304 96 64 chrY 6874420 6875008 -44638576 - L2 LINE L2 -1510 1804 1173 309 26 0 0 chrY 6875655 6875693 -44637891 + (TG)n Simple_repeat Simple_repeat 1 38 0 726 306 24 5 chrY 6875779 6875985 -44637599 + MIR SINE MIR 1 210 -52 213 233 41 55 chrY 6875983 6876056 -44637528 + MIR SINE MIR 70 141 -67 * 1734 152 7 42 chrY 6876259 6876568 -44637016 + AluSg SINE Alu 1 298 -12 195 246 168 54 chrY 6876752 6876919 -44636665 + L2 LINE L2 3126 3311 -2 186 43 0 0 chrY 6877234 6877257 -44636327 + (CA)n Simple_repeat Simple_repeat 2 24 0 474 18 0 0 chrY 6877554 6877609 -44635975 + (TTA)n Simple_repeat Simple_repeat 2 56 0 256 341 65 0 chrY 6878201 6878324 -44635260 - MIR SINE MIR -71 191 61 1339 182 17 14 chrY 6878501 6878792 -44634792 + L1MA8 LINE L1 5998 6289 -2 2614 209 69 27 chrY 6878868 6879451 -44634133 - MER90 LTR ERV1 -7 607 1 281 276 138 29 chrY 6879886 6880125 -44633459 + L1ME LINE L1 5554 5818 -303 237 184 11 23 chrY 6880229 6880240 -44633344 + (TA)n Simple_repeat Simple_repeat 2 12 -75 1601 201 3 10 chrY 6880240 6880528 -44633056 + AluJb SINE Alu 1 286 -26 237 184 11 23 chrY 6880528 6880603 -44632981 + (TA)n Simple_repeat Simple_repeat 12 87 0 2371 269 55 51 chrY 6880825 6881748 -44631836 + L1MEc LINE L1 46 975 -5421 1733 135 50 0 chrY 6881748 6882030 -44631554 + AluY SINE Alu 1 296 -15 2371 269 55 51 chrY 6882030 6882168 -44631416 + L1MEc LINE L1 975 1111 -5285 1112 225 38 86 chrY 6882183 6882578 -44631006 + MLT1B LTR MaLR 11 386 -4 4059 255 55 32 chrY 6882648 6883378 -44630206 + L1MEc LINE L1 2384 3096 -3119 1629 180 7 0 chrY 6883378 6883650 -44629934 + AluSx SINE Alu 1 274 -38 4059 255 55 32 chrY 6883650 6884730 -44628854 + L1MEc LINE L1 3096 4236 -1979 5741 76 6 12 chrY 6884739 6885585 -44627999 + L1PA3 LINE L1 1 969 -5177 4107 19 0 0 chrY 6885581 6886067 -44627517 - L1HS LINE L1 -821 5325 4840 * 7407 9 0 2 chrY 6886065 6886909 -44626675 + L1HS LINE L1 5314 6155 0 14314 54 20 1 chrY 6887088 6888970 -44624614 + L1PA3 LINE L1 936 2854 -3292 17584 42 6 1 chrY 6888977 6891973 -44621611 + L1PA3 LINE L1 3170 6155 0 458 266 78 13 chrY 6891982 6892290 -44621294 + L1M4 LINE L1 4181 4508 -1638 1262 278 56 24 chrY 6892396 6892983 -44620601 + L1M4 LINE L1 4526 5131 -1015 950 223 73 92 chrY 6892997 6893365 -44620219 - MLT1A1 LTR MaLR -4 361 1 2287 265 73 21 chrY 6893366 6894023 -44619561 - MLT1A1-int LTR MaLR -1 1734 1044 1725 144 92 50 chrY 6894058 6894221 -44619363 + THE1C LTR MaLR 1 156 -219 2387 133 19 0 chrY 6894221 6894589 -44618995 + THE1C LTR MaLR 1 375 0 1725 144 92 50 chrY 6894589 6894785 -44618799 + THE1C LTR MaLR 156 375 0 3752 217 24 45 chrY 6894785 6895515 -44618069 - MLT1A1-int LTR MaLR -642 938 392 2424 80 0 3 chrY 6895515 6895827 -44617757 - AluY SINE Alu 0 311 1 3752 217 24 45 chrY 6895827 6896210 -44617374 - MLT1A1-int LTR MaLR -1188 392 2 377 299 17 0 chrY 6896252 6896369 -44617215 - MLT1A2 LTR MaLR -72 302 184 663 281 208 19 chrY 6896401 6896761 -44616823 + L2 LINE L2 2880 3307 -6 433 116 72 7 chrY 6897215 6897353 -44616231 + (TA)n Simple_repeat Simple_repeat 1 147 0 1450 161 65 8 chrY 6897463 6897723 -44615861 + AluSg SINE Alu 1 275 -35 1738 158 7 27 chrY 6897827 6898124 -44615460 - AluJb SINE Alu -21 291 1 4038 55 0 0 chrY 6898496 6899002 -44614582 - L1PA3 LINE L1 -3 6152 5647 1895 169 0 3 chrY 6899352 6899654 -44613930 + AluSg SINE Alu 1 301 -9 301 340 44 50 chrY 6899900 6900059 -44613525 - MIR3 SINE MIR -49 159 2 365 329 112 38 chrY 6900570 6900883 -44612701 + L3 LINE CR1 715 1050 -527 531 246 29 41 chrY 6900890 6901061 -44612523 + MIR SINE MIR 94 262 0 654 344 120 41 chrY 6901066 6901551 -44612033 + L3 LINE CR1 1054 1576 -1 2080 147 3 0 chrY 6901823 6902135 -44611449 + AluSp SINE Alu 1 313 0 1977 157 0 10 chrY 6902196 6902501 -44611083 + AluSx SINE Alu 1 302 -10 28 29 0 0 chrY 6903027 6903062 -44610522 + AT_rich Low_complexity Low_complexity 1 35 0 505 238 47 12 chrY 6903127 6903299 -44610285 + L1MA4 LINE L1 5999 6176 -124 1146 234 13 57 chrY 6903312 6903611 -44609973 + AluJo SINE Alu 14 299 -13 1400 201 36 14 chrY 6903672 6903951 -44609633 - AluSx SINE Alu -25 287 3 1447 182 37 4 chrY 6904442 6904711 -44608873 + AluSg SINE Alu 12 289 -21 1089 197 112 22 chrY 6906633 6907034 -44606550 + L1MB5 LINE L1 5254 5690 -490 794 244 23 18 chrY 6907150 6907433 -44606151 + L1MB5 LINE L1 5905 6184 0 252 0 0 0 chrY 6908661 6908689 -44604895 + (TTA)n Simple_repeat Simple_repeat 3 30 0 4018 47 0 8 chrY 6908689 6909184 -44604400 - L1PA3 LINE L1 -18 6137 5647 28 0 0 0 chrY 6909292 6909320 -44604264 + AT_rich Low_complexity Low_complexity 1 28 0 801 288 33 25 chrY 6909427 6909701 -44603883 + AluJo SINE Alu 1 276 -36 26 0 0 0 chrY 6910817 6910843 -44602741 + AT_rich Low_complexity Low_complexity 1 26 0 1694 189 0 3 chrY 6911119 6911426 -44602158 - AluSg SINE Alu 0 310 5 181 353 94 0 chrY 6913162 6913247 -44600337 + L2 LINE L2 2909 3001 -312 1759 150 11 4 chrY 6913408 6913715 -44599869 + AluSc SINE Alu 1 309 0 2023 131 0 7 chrY 6913880 6914178 -44599406 + AluY SINE Alu 1 296 -15 1735 171 7 7 chrY 6914517 6914809 -44598775 - AluSc SINE Alu -17 292 1 22 70 0 0 chrY 6916085 6916128 -44597456 + AT_rich Low_complexity Low_complexity 1 43 0 225 0 0 0 chrY 6916153 6916178 -44597406 + (CA)n Simple_repeat Simple_repeat 2 26 0 21 57 0 0 chrY 6916315 6916350 -44597234 + AT_rich Low_complexity Low_complexity 1 35 0 254 125 243 97 chrY 6916620 6916656 -44596928 - L1MA7 LINE L1 -29 6262 6233 656 241 130 11 chrY 6916656 6916800 -44596784 - AluJb SINE Alu -8 294 168 333 0 0 0 chrY 6916800 6916837 -44596747 + (TG)n Simple_repeat Simple_repeat 2 38 0 656 241 130 11 chrY 6916837 6916953 -44596631 - AluJb SINE Alu -134 168 3 254 125 243 97 chrY 6916953 6917060 -44596524 - L1MA7 LINE L1 -58 6233 6098 306 206 0 44 chrY 6917145 6917213 -44596371 + MER1B DNA MER1_type 211 275 -64 225 254 0 0 chrY 6917373 6917428 -44596156 + MER1B DNA MER1_type 266 320 -13 456 242 0 0 chrY 6917449 6917548 -44596036 - AluJ/FLAM SINE Alu -211 101 3 315 288 99 101 chrY 6918967 6919791 -44593793 - L1M2a LINE L1 -5490 1678 1185 279 0 0 0 chrY 6922554 6922585 -44590999 + (TG)n Simple_repeat Simple_repeat 2 32 0 1706 189 0 0 chrY 6922585 6922870 -44590714 - AluSx SINE Alu -27 285 1 23 0 0 0 chrY 6922939 6922962 -44590622 + AT_rich Low_complexity Low_complexity 1 23 0 1673 178 4 0 chrY 6923179 6923449 -44590135 + AluSq SINE Alu 13 283 -30 409 314 125 29 chrY 6924170 6924450 -44589134 + L2 LINE L2 2196 2502 -812 315 0 0 0 chrY 6925550 6925585 -44587999 + (TG)n Simple_repeat Simple_repeat 2 36 0 255 224 0 0 chrY 6925585 6925652 -44587932 + T-rich Low_complexity Low_complexity 1 67 0 205 311 27 27 chrY 6925735 6925809 -44587775 - MER5A DNA MER1_type -73 116 43 271 269 69 34 chrY 6926254 6926429 -44587155 + L1M2 LINE L1 5340 5520 -780 34 24 0 0 chrY 6928498 6928539 -44585045 + AT_rich Low_complexity Low_complexity 1 41 0 22 0 0 0 chrY 6928817 6928839 -44584745 + AT_rich Low_complexity Low_complexity 1 22 0 7288 39 11 0 chrY 6929018 6929950 -44583634 - L1PA4 LINE L1 -1 6154 5215 13158 38 1 0 chrY 6929950 6931622 -44581962 + L1PA4 LINE L1 3555 5228 -918 3217 173 35 54 chrY 6931636 6932452 -44581132 + L1PA16 LINE L1 5357 6157 -9 21 36 0 0 chrY 6933408 6933436 -44580148 + AT_rich Low_complexity Low_complexity 1 28 0 1609 182 26 0 chrY 6937973 6938242 -44575342 - AluSx SINE Alu -30 282 7 1155 248 3 18 chrY 6938252 6938538 -44575046 - AluJo SINE Alu -23 289 8 1762 92 11 8 chrY 6939223 6939540 -44574044 - L1PA5 LINE L1 -580 5574 5328 4116 86 2 9 chrY 6939540 6940105 -44573479 + L1PA5 LINE L1 5586 6154 0 807 250 68 0 chrY 6943086 6943278 -44570306 + AluJb SINE Alu 78 282 -30 303 28 0 0 chrY 6943303 6943339 -44570245 + (CA)n Simple_repeat Simple_repeat 1 36 0 33 43 0 0 chrY 6943787 6943834 -44569750 + AT_rich Low_complexity Low_complexity 1 47 0 239 286 6 57 chrY 6944455 6944630 -44568954 + GA-rich Low_complexity Low_complexity 1 166 0 1100 95 14 0 chrY 6949258 6949406 -44564178 + MER11B LTR ERVK 1 150 -1086 6408 102 14 24 chrY 6949482 6949503 -44564081 + MER11C LTR ERVK 101 121 -950 6630 29 9 0 chrY 6949503 6950238 -44563346 - L1PA2 LINE L1 -5 6150 5409 6408 102 14 24 chrY 6950238 6951182 -44562402 + MER11C LTR ERVK 121 1057 -14 230 257 68 0 chrY 6954232 6954380 -44559204 + (TA)n Simple_repeat Simple_repeat 2 159 0 31 0 0 0 chrY 6954407 6954438 -44559146 + AT_rich Low_complexity Low_complexity 1 31 0 10622 139 45 9 chrY 6954740 6956577 -44557007 + L1PA7 LINE L1 2706 4608 -1538 1602 95 9 3 chrY 6956589 6957422 -44556162 + L1PA7 LINE L1 5231 6150 -4 283 239 49 7 chrY 6957422 6957564 -44556020 + (TA)n Simple_repeat Simple_repeat 1 148 0 184 259 86 0 chrY 6957888 6957946 -44555638 + L2 LINE L2 2548 2610 -704 3172 38 18 0 chrY 6958233 6958627 -44554957 - L1PA4 LINE L1 -1445 4701 4301 7455 54 3 16 chrY 6958627 6960105 -44553479 + L1PA4 LINE L1 4687 6153 -2 21 36 0 0 chrY 6961131 6961159 -44552425 + AT_rich Low_complexity Low_complexity 1 28 0 504 45 0 0 chrY 6961171 6961238 -44552346 + (TCTA)n Simple_repeat Simple_repeat 4 70 0 1390 228 0 3 chrY 6961244 6961547 -44552037 + AluSg SINE Alu 1 302 -8 35 24 0 0 chrY 6961808 6961850 -44551734 + AT_rich Low_complexity Low_complexity 1 42 0 1002 292 29 18 chrY 6962355 6962636 -44550948 - AluJo SINE Alu -18 284 1 27 0 0 0 chrY 6962744 6962771 -44550813 + AT_rich Low_complexity Low_complexity 1 27 0 687 253 34 34 chrY 6964057 6964235 -44549349 - AluJb SINE Alu -133 179 2 422 277 39 0 chrY 6964236 6964390 -44549194 - L1MA4 LINE L1 -124 6176 6013 687 143 0 0 chrY 6964403 6964501 -44549083 - AluS SINE Alu -214 99 2 1452 118 5 0 chrY 6964558 6964761 -44548823 - AluSp SINE Alu -8 305 102 1322 254 3 17 chrY 6965063 6965351 -44548233 + AluSx SINE Alu 3 286 -16 1208 269 3 29 chrY 6965413 6965722 -44547862 - AluJo SINE Alu 0 302 2 3509 140 283 0 chrY 6965726 6965947 -44547637 - LTR12 LTR ERV1 0 826 669 2872 7 0 0 chrY 6965947 6966253 -44547331 - AluY SINE Alu -5 306 1 3509 140 283 0 chrY 6966253 6966675 -44546909 - LTR12 LTR ERV1 -157 669 1 3681 132 74 0 chrY 6966678 6967256 -44546328 - HERV9 LTR ERV1 -21 8378 7758 1767 159 19 34 chrY 6967252 6968269 -44545315 - HERV17 LTR ERV1 -5176 1720 706 * 5748 130 6 10 chrY 6968270 6969139 -44544445 - HERV17 LTR ERV1 -3455 4944 4080 20153 126 29 47 chrY 6969146 6972675 -44540909 - HERV17 LTR ERV1 -236 478 43 229 250 0 0 chrY 6972682 6972730 -44540854 - LTR30 LTR ERV1 -673 49 2 288 333 19 74 chrY 6972730 6972884 -44540700 + L1M3de LINE L1 473 613 -6040 1978 148 3 3 chrY 6972884 6973188 -44540396 - AluSx SINE Alu -8 304 1 288 333 19 74 chrY 6973188 6973249 -44540335 + L1M3de LINE L1 613 676 -5977 1305 234 40 64 chrY 6973523 6973946 -44539638 + MSTB LTR MaLR 1 413 -13 1607 203 0 13 chrY 6974154 6974465 -44539119 - AluY SINE Alu -3 308 2 602 350 61 34 chrY 6974553 6974996 -44538588 + L1M3b LINE L1 56 510 -5771 261 0 0 0 chrY 6976010 6976039 -44537545 + (CA)n Simple_repeat Simple_repeat 2 30 0 451 243 7 112 chrY 6976283 6976435 -44537149 + FLAM_C SINE Alu 2 137 -6 226 194 0 0 chrY 6977099 6977135 -44536449 + polypyrimidine Low_complexity Low_complexity 1 36 0 943 134 11 11 chrY 6977135 6977314 -44536270 + CT-rich Low_complexity Low_complexity 1 179 0 1415 237 0 17 chrY 6977340 6977631 -44535953 - AluSx SINE Alu -16 286 1 1238 248 3 3 chrY 6977671 6977982 -44535602 - AluSx SINE Alu -1 311 1 311 270 56 24 chrY 6978447 6978573 -44535011 - MLT1F LTR MaLR -27 515 386 573 15 0 0 chrY 6979402 6979468 -44534116 + (TCTA)n Simple_repeat Simple_repeat 1 66 0 27 62 0 0 chrY 6979474 6979522 -44534062 + AT_rich Low_complexity Low_complexity 1 48 0 25 0 0 0 chrY 6979790 6979815 -44533769 + AT_rich Low_complexity Low_complexity 1 25 0 24 32 0 0 chrY 6980004 6980035 -44533549 + AT_rich Low_complexity Low_complexity 1 31 0 308 267 22 22 chrY 6981420 6981510 -44532074 - L1MC4 LINE L1 -1339 6703 6614 252 235 0 0 chrY 6981511 6981562 -44532022 - MER4-int LTR ERV1 -5437 1161 1111 223 121 0 55 chrY 6981630 6981721 -44531863 + (TA)n Simple_repeat Simple_repeat 1 86 0 520 253 181 48 chrY 6982002 6982251 -44531333 + AluJo SINE Alu 11 292 -10 23 33 0 0 chrY 6982399 6982429 -44531155 + AT_rich Low_complexity Low_complexity 1 30 0 249 286 91 0 chrY 6983184 6983261 -44530323 + LTR33A LTR ERVL 102 185 -338 636 165 8 25 chrY 6983426 6983547 -44530037 + LTR1 LTR ERV1 1 119 -666 2329 190 35 53 chrY 6983552 6984156 -44529428 + LTR1 LTR ERV1 89 681 -104 225 319 79 75 chrY 6985045 6985550 -44528034 + SST1 Satellite centromeric 94 600 -963 180 167 0 0 chrY 6986451 6986499 -44527085 + (TG)n Simple_repeat Simple_repeat 1 48 0 497 304 66 33 chrY 6987529 6987924 -44525660 + SST1 Satellite centromeric 117 524 -1039 273 29 0 0 chrY 6988647 6988681 -44524903 + (TG)n Simple_repeat Simple_repeat 2 35 0 28 0 0 0 chrY 6988945 6988973 -44524611 + AT_rich Low_complexity Low_complexity 1 28 0 381 331 50 41 chrY 6989523 6989982 -44523602 + SST1 Satellite centromeric 139 601 -962 350 300 74 74 chrY 6990790 6991180 -44522404 + SST1 Satellite centromeric 1163 1552 -11 287 313 63 52 chrY 6993713 6994096 -44519488 + SST1 Satellite centromeric 138 524 -1039 230 326 11 11 chrY 6994653 6994745 -44518839 + SST1 Satellite centromeric 1148 1239 -324 185 83 28 0 chrY 6995106 6995142 -44518442 + (TG)n Simple_repeat Simple_repeat 1 37 0 283 317 50 50 chrY 6996230 6996628 -44516956 + SST1 Satellite centromeric 207 604 -959 310 309 77 77 chrY 6997106 6997511 -44516073 + SST1 Satellite centromeric 1148 1552 -11 339 149 0 0 chrY 6997535 6997609 -44515975 + (TG)n Simple_repeat Simple_repeat 1 74 0 33 25 0 0 chrY 6998451 6998491 -44515093 + AT_rich Low_complexity Low_complexity 1 40 0 6451 25 0 0 chrY 6998556 6999292 -44514292 - L1PA2 LINE L1 -8 6147 5412 222 62 0 0 chrY 6999458 6999490 -44514094 + (TG)n Simple_repeat Simple_repeat 1 32 0 195 42 0 0 chrY 6999613 6999637 -44513947 + (TTTC)n Simple_repeat Simple_repeat 2 25 0 195 42 0 0 chrY 6999708 6999732 -44513852 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 289 292 78 41 chrY 7000104 7000347 -44513237 + SST1 Satellite centromeric 29 280 -1283 245 290 103 19 chrY 7001376 7001531 -44512053 + SST1 Satellite centromeric 1385 1552 -11 180 97 0 0 chrY 7001555 7001586 -44511998 + (TG)n Simple_repeat Simple_repeat 2 32 0 362 295 80 66 chrY 7002600 7003112 -44510472 + SST1 Satellite centromeric 83 601 -962 542 306 66 46 chrY 7005000 7005454 -44508130 + SST1 Satellite centromeric 138 600 -963 230 287 85 60 chrY 7007409 7007726 -44505858 + SST1 Satellite centromeric 137 461 -1102 277 283 97 48 chrY 7008564 7008709 -44504875 + SST1 Satellite centromeric 1387 1538 -25 247 250 22 0 chrY 7008712 7008804 -44504780 + (TG)n Simple_repeat Simple_repeat 1 94 0 232 303 92 60 chrY 7009852 7010103 -44503481 + SST1 Satellite centromeric 138 396 -1167 263 319 60 57 chrY 7011379 7011627 -44501957 + SST1 Satellite centromeric 352 600 -963 285 214 20 10 chrY 7012471 7012569 -44501015 + (TG)n Simple_repeat Simple_repeat 2 100 0 186 71 0 0 chrY 7012793 7012821 -44500763 + (CAAA)n Simple_repeat Simple_repeat 2 29 0 374 296 68 52 chrY 7013309 7013559 -44500025 + SST1 Satellite centromeric 349 602 -961 234 107 27 53 chrY 7014424 7014499 -44499085 + (TG)n Simple_repeat Simple_repeat 1 73 0 266 354 51 38 chrY 7015445 7015974 -44497610 + SST1 Satellite centromeric 66 601 -962 318 26 0 0 chrY 7016903 7016942 -44496642 + (TG)n Simple_repeat Simple_repeat 1 39 0 227 338 0 0 chrY 7018909 7018986 -44494598 + SST1 Satellite centromeric 1148 1224 -339 195 42 0 0 chrY 7021728 7021752 -44491832 + (TTTA)n Simple_repeat Simple_repeat 2 25 0 203 111 0 74 chrY 7021921 7021975 -44491609 + (TG)n Simple_repeat Simple_repeat 1 50 0 262 282 32 40 chrY 7023016 7023140 -44490444 + SST1 Satellite centromeric 138 260 -1303 231 284 14 14 chrY 7023923 7023997 -44489587 + SST1 Satellite centromeric 1156 1229 -334 180 179 0 0 chrY 7024374 7024413 -44489171 + (TG)n Simple_repeat Simple_repeat 1 39 0 1542 40 0 0 chrY 7025955 7026156 -44487428 - L1PA4 LINE L1 -2962 3184 2984 17734 46 6 1 chrY 7026156 7029114 -44484470 + L1PA4 LINE L1 3189 6154 -1 294 87 0 0 chrY 7029276 7029322 -44484262 + (TG)n Simple_repeat Simple_repeat 1 46 0 267 307 93 85 chrY 7031252 7031630 -44481954 + SST1 Satellite centromeric 1156 1536 -27 196 161 32 0 chrY 7031669 7031731 -44481853 + (TG)n Simple_repeat Simple_repeat 1 64 0 215 100 50 0 chrY 7031938 7031978 -44481606 + (CAAA)n Simple_repeat Simple_repeat 2 43 0 381 306 50 71 chrY 7032828 7033210 -44480374 + SST1 Satellite centromeric 227 600 -963 249 98 0 0 chrY 7034418 7034459 -44479125 + (A)n Simple_repeat Simple_repeat 1 41 0 340 314 64 54 chrY 7035330 7035722 -44477862 + SST1 Satellite centromeric 207 602 -961 234 143 0 0 chrY 7036639 7036688 -44476896 + (TG)n Simple_repeat Simple_repeat 2 50 0 250 244 22 0 chrY 7038278 7038368 -44475216 + (TG)n Simple_repeat Simple_repeat 1 92 0 381 319 55 40 chrY 7039475 7039804 -44473780 + SST1 Satellite centromeric 191 524 -1039 214 256 26 0 chrY 7040753 7040831 -44472753 + (TG)n Simple_repeat Simple_repeat 1 80 0 255 266 56 56 chrY 7041804 7041947 -44471637 + SST1 Satellite centromeric 138 280 -1283 240 277 99 28 chrY 7042899 7043040 -44470544 + SST1 Satellite centromeric 1386 1536 -27 268 234 21 0 chrY 7043045 7043139 -44470445 + (TG)n Simple_repeat Simple_repeat 1 96 0 301 301 68 51 chrY 7044288 7044580 -44469004 + SST1 Satellite centromeric 228 524 -1039 207 114 0 0 chrY 7045440 7045475 -44468109 + (TG)n Simple_repeat Simple_repeat 2 36 0 237 298 32 40 chrY 7046512 7046636 -44466948 + SST1 Satellite centromeric 138 260 -1303 284 268 14 0 chrY 7047448 7047519 -44466065 + SST1 Satellite centromeric 1156 1227 -336 2094 143 0 0 chrY 7052118 7052418 -44461166 - AluY SINE Alu -11 300 1 252 154 0 0 chrY 7053881 7053933 -44459651 + (TG)n Simple_repeat Simple_repeat 1 52 0 443 300 73 53 chrY 7054906 7055429 -44458155 + SST1 Satellite centromeric 66 598 -965 309 328 58 31 chrY 7057476 7057998 -44455586 + SST1 Satellite centromeric 66 601 -962 183 80 0 0 chrY 7060064 7060089 -44453495 + (T)n Simple_repeat Simple_repeat 1 25 0 299 328 48 40 chrY 7061273 7061648 -44451936 + SST1 Satellite centromeric 223 600 -963 202 146 18 18 chrY 7062555 7062610 -44450974 + (TG)n Simple_repeat Simple_repeat 2 56 0 180 77 0 0 chrY 7062727 7062753 -44450831 + (TG)n Simple_repeat Simple_repeat 1 26 0 198 0 0 0 chrY 7065125 7065147 -44448437 + (TG)n Simple_repeat Simple_repeat 1 22 0 238 330 0 0 chrY 7066999 7067093 -44446491 + SST1 Satellite centromeric 1146 1239 -324 231 61 0 0 chrY 7067452 7067485 -44446099 + (TG)n Simple_repeat Simple_repeat 2 34 0 921 256 3 36 chrY 7069771 7070132 -44443452 - LTR2 LTR ERV1 0 449 1 737 210 156 0 chrY 7070132 7070299 -44443285 - Harlequin LTR ERV1 -1 6895 6703 577 285 0 0 chrY 7070294 7070417 -44443167 - Harlequin LTR ERV1 -1307 5589 5467 * 3665 211 21 3 chrY 7070425 7071918 -44441666 - HERVE LTR ERV1 -1814 5999 4386 * 9468 182 31 21 chrY 7071917 7074226 -44439358 - HERVE LTR ERV1 -3719 4094 1684 182 279 139 0 chrY 7076131 7076210 -44437374 - L3 LINE CR1 -91 1486 1397 233 100 0 67 chrY 7077248 7077308 -44436276 + (TG)n Simple_repeat Simple_repeat 1 56 0 216 158 0 0 chrY 7077513 7077551 -44436033 + A-rich Low_complexity Low_complexity 1 38 0 200 189 40 14 chrY 7079727 7079801 -44433783 + (TG)n Simple_repeat Simple_repeat 2 77 0 2172 32 0 7 chrY 7080034 7080312 -44433272 - L1P LINE L1 -891 5255 4978 3644 68 2 4 chrY 7080312 7080446 -44433138 + L1PA3 LINE L1 5686 5819 -336 2285 85 0 10 chrY 7080446 7080739 -44432845 + AluY SINE Alu 9 298 -13 3644 68 2 4 chrY 7080739 7081074 -44432510 + L1PA3 LINE L1 5819 6155 0 22 0 0 0 chrY 7081354 7081376 -44432208 + AT_rich Low_complexity Low_complexity 1 22 0 254 60 0 80 chrY 7083282 7083332 -44430252 + (TG)n Simple_repeat Simple_repeat 2 47 0 229 286 13 13 chrY 7084093 7084170 -44429414 + SST1 Satellite centromeric 1163 1239 -324 225 250 0 0 chrY 7084503 7084563 -44429021 + (TG)n Simple_repeat Simple_repeat 1 60 0 23 0 0 0 chrY 7085072 7085095 -44428489 + AT_rich Low_complexity Low_complexity 1 23 0 225 164 33 16 chrY 7086617 7086678 -44426906 + (TG)n Simple_repeat Simple_repeat 1 62 0 231 315 0 14 chrY 7088664 7088737 -44424847 + SST1 Satellite centromeric 1156 1227 -336 208 184 20 20 chrY 7089081 7089130 -44424454 + (TG)n Simple_repeat Simple_repeat 2 50 0 243 247 25 0 chrY 7091500 7091581 -44422003 + (TG)n Simple_repeat Simple_repeat 1 83 0 234 0 0 0 chrY 7091790 7091816 -44421768 + (TAAA)n Simple_repeat Simple_repeat 2 27 0 271 77 15 62 chrY 7093999 7094064 -44419520 + (TG)n Simple_repeat Simple_repeat 1 62 0 262 293 90 18 chrY 7096297 7096464 -44417120 + SST1 Satellite centromeric 1374 1552 -11 387 83 0 0 chrY 7096488 7096548 -44417036 + (TG)n Simple_repeat Simple_repeat 1 60 0 456 19 0 0 chrY 7098305 7098358 -44415226 + (TG)n Simple_repeat Simple_repeat 2 54 0 191 48 0 95 chrY 7099649 7099691 -44413893 + (TG)n Simple_repeat Simple_repeat 1 38 0 252 244 23 0 chrY 7100466 7100552 -44413032 + (TG)n Simple_repeat Simple_repeat 1 88 0 196 85 0 85 chrY 7102958 7103017 -44410567 + (TG)n Simple_repeat Simple_repeat 1 54 0 186 43 0 0 chrY 7103066 7103089 -44410495 + (T)n Simple_repeat Simple_repeat 1 23 0 245 29 29 0 chrY 7103254 7103288 -44410296 + (TAAA)n Simple_repeat Simple_repeat 2 36 0 208 156 62 0 chrY 7104766 7104830 -44408754 + (CA)n Simple_repeat Simple_repeat 2 69 0 186 39 0 0 chrY 7106480 7106506 -44407078 - L2 LINE L2 -4 3309 3284 34 24 0 0 chrY 7106888 7106929 -44406655 + AT_rich Low_complexity Low_complexity 1 41 0 25 31 0 0 chrY 7107052 7107084 -44406500 + AT_rich Low_complexity Low_complexity 1 32 0 320 271 12 12 chrY 7107090 7107175 -44406409 - FRAM SINE Alu -13 153 69 421 254 18 9 chrY 7107236 7107346 -44406238 - FLAM_C SINE Alu -22 121 11 24 32 0 0 chrY 7109013 7109044 -44404540 + AT_rich Low_complexity Low_complexity 1 31 0 24 0 0 0 chrY 7109231 7109255 -44404329 + AT_rich Low_complexity Low_complexity 1 24 0 275 108 14 40 chrY 7109522 7109596 -44403988 + (TA)n Simple_repeat Simple_repeat 1 72 0 261 278 56 24 chrY 7110425 7110551 -44403033 + MLT1F LTR MaLR 386 515 -27 1231 251 3 3 chrY 7111018 7111329 -44402255 + AluSx SINE Alu 1 311 -1 1298 227 0 31 chrY 7111373 7111664 -44401920 + AluSx SINE Alu 5 286 -26 1208 81 6 0 chrY 7111690 7111864 -44401720 + (GAAA)n Simple_repeat Simple_repeat 1 175 0 32 26 0 0 chrY 7111968 7112007 -44401577 + AT_rich Low_complexity Low_complexity 1 39 0 340 318 105 7 chrY 7112548 7112700 -44400884 - AluJ/FLAM SINE Alu -215 87 1 746 334 42 25 chrY 7113974 7114423 -44399161 - L1M3b LINE L1 -5771 510 54 1662 189 0 30 chrY 7114531 7114832 -44398752 + AluY SINE Alu 2 293 -18 1248 213 89 55 chrY 7115038 7115441 -44398143 - MSTB LTR MaLR -4 422 6 1734 185 30 3 chrY 7115782 7116080 -44397504 + AluSx SINE Alu 1 306 -6 1962 115 140 183 chrY 7116233 7116841 -44396743 + LTR12 LTR ERV1 1 582 -132 12221 140 16 15 chrY 7116843 7119891 -44393693 + HERV9 LTR ERV1 4 3139 -5260 5050 146 3 11 chrY 7119898 7120770 -44392814 + HERV9 LTR ERV1 4080 4944 -3455 1887 201 99 62 chrY 7120771 7121621 -44391963 + HERV9 LTR ERV1 840 1720 -5176 * 3664 145 8 2 chrY 7121616 7122230 -44391354 + HERV9 LTR ERV1 7757 8374 -25 2680 129 197 69 chrY 7122237 7122847 -44390737 + LTR12 LTR ERV1 1 688 0 1032 292 10 17 chrY 7122851 7123149 -44390435 + AluJo SINE Alu 2 297 -5 30 27 0 0 chrY 7123177 7123214 -44390370 + AT_rich Low_complexity Low_complexity 1 37 0 1142 229 3 50 chrY 7123214 7123511 -44390073 - AluSx SINE Alu -17 285 3 1322 138 5 0 chrY 7123807 7124029 -44389555 + AluSp SINE Alu 96 318 0 2061 152 3 0 chrY 7124080 7124383 -44389201 + AluSx SINE Alu 1 304 -8 450 251 35 34 chrY 7125031 7125204 -44388380 + L1MA4 LINE L1 6000 6177 -125 1375 232 0 29 chrY 7125204 7125514 -44388070 + AluJo SINE Alu 2 302 -10 450 251 35 34 chrY 7125514 7125563 -44388021 + L1MA4 LINE L1 6177 6224 -78 1193 205 4 17 chrY 7125572 7125806 -44387778 - AluSx SINE Alu -26 286 56 22 35 0 0 chrY 7127107 7127136 -44386448 + AT_rich Low_complexity Low_complexity 1 29 0 569 237 38 34 chrY 7127567 7127803 -44385781 + L1M3 LINE L1 5313 5549 -631 323 175 210 21 chrY 7128007 7128150 -44385434 + L1MB5 LINE L1 5254 5423 -755 651 207 168 0 chrY 7128160 7128368 -44385216 + L1MB5 LINE L1 5504 5746 -428 839 257 70 15 chrY 7128393 7128720 -44384864 + L1MB5 LINE L1 5817 6161 -13 183 80 0 0 chrY 7128744 7128769 -44384815 + (T)n Simple_repeat Simple_repeat 1 25 0 21 0 0 0 chrY 7130047 7130068 -44383516 + AT_rich Low_complexity Low_complexity 1 21 0 846 290 28 21 chrY 7130182 7130468 -44383116 + AluJo SINE Alu 1 288 -14 25 31 0 0 chrY 7131577 7131609 -44381975 + AT_rich Low_complexity Low_complexity 1 32 0 724 239 0 0 chrY 7131882 7132037 -44381547 - AluSg/x SINE Alu -17 295 141 304 179 14 21 chrY 7132039 7132184 -44381400 + (TA)n Simple_repeat Simple_repeat 2 145 0 468 201 19 9 chrY 7132222 7132756 -44380828 + (TA)n Simple_repeat Simple_repeat 1 539 0 17416 42 5 0 chrY 7132763 7135684 -44377900 - L1PA3 LINE L1 -11 6144 3213 192 208 28 0 chrY 7135684 7135790 -44377794 + (TA)n Simple_repeat Simple_repeat 1 109 0 276 291 29 0 chrY 7135916 7136088 -44377496 + (TA)n Simple_repeat Simple_repeat 1 177 0 13211 49 1 1 chrY 7136599 7138357 -44375227 - L1PA3 LINE L1 -2961 3185 1427 17318 49 0 0 chrY 7138359 7141319 -44372265 + L1PA3 LINE L1 3188 6155 0 283 392 17 0 chrY 7141859 7141979 -44371605 - L2 LINE L2 -271 3042 2921 250 219 29 29 chrY 7142535 7142640 -44370944 + (TA)n Simple_repeat Simple_repeat 1 105 0 5884 113 18 6 chrY 7142640 7143552 -44370032 - L1PA7 LINE L1 -4 6150 5232 10579 134 11 11 chrY 7143565 7145470 -44368114 - L1PA7 LINE L1 -1538 4608 2705 286 232 61 12 chrY 7145917 7146081 -44367503 + (TA)n Simple_repeat Simple_repeat 2 173 0 28 48 0 0 chrY 7154066 7154108 -44359476 + AT_rich Low_complexity Low_complexity 1 42 0 21 0 0 0 chrY 7154234 7154255 -44359329 + AT_rich Low_complexity Low_complexity 1 21 0 324 0 0 0 chrY 7154562 7154598 -44358986 + (TG)n Simple_repeat Simple_repeat 1 36 0 811 249 124 0 chrY 7154635 7154836 -44358748 - AluJb SINE Alu -30 282 57 1157 260 40 0 chrY 7157619 7157733 -44355851 + AluJo SINE Alu 8 116 -196 207 0 0 0 chrY 7157733 7157756 -44355828 + (CAA)n Simple_repeat Simple_repeat 2 24 0 1157 260 40 0 chrY 7157756 7157914 -44355670 + AluJo SINE Alu 116 291 -21 1814 170 20 0 chrY 7157925 7158219 -44355365 + AluSx SINE Alu 6 305 -7 1757 183 0 3 chrY 7159999 7160283 -44353301 + AluSx SINE Alu 3 287 -25 351 0 0 0 chrY 7160283 7160322 -44353262 + (CA)n Simple_repeat Simple_repeat 2 40 0 1757 183 0 3 chrY 7160322 7160338 -44353246 + AluSx SINE Alu 287 302 -10 309 310 112 71 chrY 7163632 7163997 -44349587 + L1M2 LINE L1 758 1137 -5712 1115 169 22 13 chrY 7166166 7166397 -44347187 + LTR1 LTR ERV1 1 233 -552 * 1793 185 36 74 chrY 7166375 7166980 -44346604 + LTR1 LTR ERV1 113 694 -91 466 225 0 42 chrY 7167349 7167469 -44346115 - MER41E LTR ERV1 -397 115 1 21 0 0 0 chrY 7168299 7168320 -44345264 + AT_rich Low_complexity Low_complexity 1 21 0 21 36 0 0 chrY 7169433 7169461 -44344123 + AT_rich Low_complexity Low_complexity 1 28 0 227 296 99 0 chrY 7170379 7170460 -44343124 - MIR SINE MIR -122 140 52 823 287 10 0 chrY 7170460 7170655 -44342929 - MIR SINE MIR -65 197 1 390 21 0 0 chrY 7170741 7170788 -44342796 + (CA)n Simple_repeat Simple_repeat 1 47 0 816 327 80 35 chrY 7171430 7172027 -44341557 + L2 LINE L2 1173 1796 -1518 938 218 38 85 chrY 7172031 7172179 -44341405 + AluSg SINE Alu 9 136 -174 8709 57 4 0 chrY 7172179 7174084 -44339500 - L1PA4 LINE L1 -1 6154 4244 938 218 38 85 chrY 7174084 7174252 -44339332 + AluSg SINE Alu 136 310 0 541 272 193 23 chrY 7174252 7174553 -44339031 + L2 LINE L2 1786 2137 -1177 35265 70 15 1 chrY 7174879 7179798 -44333786 + L1PA4 LINE L1 1 4990 -1156 1135 39 0 0 chrY 7179798 7179928 -44333656 + AluYa5/8 SINE Alu 166 295 -16 7285 38 6 0 chrY 7179928 7181094 -44332490 + L1PA4 LINE L1 4980 6150 -5 2039 124 7 7 chrY 7182392 7182674 -44330910 + AluSp SINE Alu 1 285 -28 267 31 0 0 chrY 7182674 7182706 -44330878 + (CA)n Simple_repeat Simple_repeat 1 32 0 610 247 165 28 chrY 7182792 7183083 -44330501 - Charlie2 DNA MER1_type -671 2191 1861 720 281 56 14 chrY 7183111 7183430 -44330154 - MER93b LTR ERV1 -2 371 62 192 311 16 0 chrY 7183966 7184027 -44329557 - L2 LINE L2 -6 3307 3246 24 32 0 0 chrY 7185404 7185435 -44328149 + AT_rich Low_complexity Low_complexity 1 31 0 453 333 124 13 chrY 7185795 7186167 -44327417 + L2 LINE L2 1592 2004 -1310 367 302 7 60 chrY 7186392 7186541 -44327043 + L2 LINE L2 3171 3311 -2 180 346 61 33 chrY 7186686 7186900 -44326684 + L2 LINE L2 2513 2732 -582 237 320 112 8 chrY 7187080 7187205 -44326379 + L2 LINE L2 3172 3309 -4 213 94 0 0 chrY 7187705 7187737 -44325847 + (TG)n Simple_repeat Simple_repeat 1 32 0 330 233 0 0 chrY 7187759 7187845 -44325739 + (TA)n Simple_repeat Simple_repeat 2 87 0 222 118 0 0 chrY 7187876 7187910 -44325674 + (TG)n Simple_repeat Simple_repeat 2 35 0 1184 140 6 0 chrY 7188065 7188244 -44325340 - AluSp SINE Alu -11 302 123 1613 180 10 27 chrY 7188247 7188547 -44325037 - AluSq SINE Alu -18 295 1 275 307 21 74 chrY 7188548 7188737 -44324847 + L2 LINE L2 2831 3009 -263 1688 141 33 49 chrY 7189018 7189323 -44324261 - AluY SINE Alu 0 311 12 222 211 132 26 chrY 7189364 7189440 -44324144 + L2 LINE L2 3139 3222 -50 1412 298 40 30 chrY 7189719 7190008 -44323576 + HAL1 LINE L1 1217 1502 -1005 2061 115 3 62 chrY 7190008 7190330 -44323254 + AluSp SINE Alu 1 303 -10 1412 298 40 30 chrY 7190330 7190838 -44322746 + HAL1 LINE L1 1502 2022 -485 310 313 88 25 chrY 7190854 7191330 -44322254 + L1M4 LINE L1 2860 3403 -2743 186 204 26 0 chrY 7191344 7191457 -44322127 + (TA)n Simple_repeat Simple_repeat 1 116 0 318 266 49 49 chrY 7191597 7191740 -44321844 + L1MA8 LINE L1 3594 3736 -2410 2622 116 6 0 chrY 7192225 7192578 -44321006 + THE1A LTR MaLR 1 355 0 1541 137 68 30 chrY 7192720 7192983 -44320601 - AluSx SINE Alu -39 273 1 1820 199 0 0 chrY 7193023 7193335 -44320249 - AluSx SINE Alu 0 312 1 28 48 0 0 chrY 7194525 7194567 -44319017 + AT_rich Low_complexity Low_complexity 1 42 0 2956 252 52 41 chrY 7196886 7197762 -44315822 + L1MA8 LINE L1 4559 5424 -867 207 0 0 0 chrY 7197762 7197785 -44315799 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 2956 252 52 41 chrY 7197785 7198629 -44314955 + L1MA8 LINE L1 5424 6291 0 297 0 0 0 chrY 7198769 7198802 -44314782 + (CA)n Simple_repeat Simple_repeat 2 34 0 387 330 100 33 chrY 7198843 7198947 -44314637 + L1M4c LINE L1 1046 1142 -5242 999 218 40 44 chrY 7198947 7199245 -44314339 + AluJo SINE Alu 2 298 -4 387 330 100 33 chrY 7199245 7199440 -44314144 + L1M4c LINE L1 1142 1365 -5019 219 88 0 0 chrY 7199980 7200014 -44313570 + (T)n Simple_repeat Simple_repeat 1 34 0 222 117 0 50 chrY 7200225 7200285 -44313299 + (GGAA)n Simple_repeat Simple_repeat 1 57 0 360 296 110 86 chrY 7202808 7203318 -44310266 + L1M2 LINE L1 906 1427 -5422 1500 177 54 0 chrY 7207555 7207832 -44305752 - AluSg SINE Alu -18 292 1 21 57 0 0 chrY 7207885 7207920 -44305664 + AT_rich Low_complexity Low_complexity 1 35 0 1880 160 3 0 chrY 7209544 7209832 -44303752 - AluSx SINE Alu -18 294 6 1183 244 3 7 chrY 7209844 7210127 -44303457 - AluJo SINE Alu -23 289 8 2169 108 0 10 chrY 7211390 7211696 -44301888 - AluY SINE Alu -8 303 1 860 241 123 5 chrY 7214173 7214376 -44299208 + AluJb SINE Alu 56 282 -30 216 97 0 0 chrY 7214889 7214920 -44298664 + (TA)n Simple_repeat Simple_repeat 1 31 0 4839 133 4 19 chrY 7218217 7218915 -44294669 - LTR12 LTR ERV1 0 688 1 2297 94 7 7 chrY 7221431 7221740 -44291844 + AluY SINE Alu 1 309 -2 528 122 0 0 chrY 7221742 7221824 -44291760 + (GGAA)n Simple_repeat Simple_repeat 3 84 0 221 216 26 43 chrY 7222487 7222603 -44290981 + (CATATA)n Simple_repeat Simple_repeat 1 114 0 23 54 0 0 chrY 7222661 7222698 -44290886 + AT_rich Low_complexity Low_complexity 1 37 0 17744 117 17 2 chrY 7223108 7226544 -44287040 + L1PA7 LINE L1 2707 6154 0 365 247 40 11 chrY 7226544 7226718 -44286866 + (TA)n Simple_repeat Simple_repeat 2 180 0 23 78 0 0 chrY 7226737 7226788 -44286796 + AT_rich Low_complexity Low_complexity 1 51 0 244 337 167 16 chrY 7227270 7227528 -44286056 + L2 LINE L2 2921 3217 -96 1260 161 5 13 chrY 7228462 7228686 -44284898 - AluSg/x SINE Alu -7 305 84 1332 219 25 7 chrY 7228701 7228984 -44284600 + AluJb SINE Alu 1 288 -24 1323 223 49 0 chrY 7229348 7229635 -44283949 - AluJo SINE Alu -4 308 8 33 35 0 17 chrY 7230724 7230742 -44282842 + AT_rich Low_complexity Low_complexity 1 18 -39 1227 198 13 76 chrY 7230742 7231045 -44282539 + AluSx SINE Alu 1 284 -28 33 35 0 17 chrY 7231045 7231084 -44282500 + AT_rich Low_complexity Low_complexity 18 57 0 1198 235 14 31 chrY 7231308 7231602 -44281982 - AluJb SINE Alu -13 299 11 698 216 0 0 chrY 7231632 7231748 -44281836 - FLAM_C SINE Alu -14 119 4 1100 60 18 12 chrY 7231765 7231932 -44281652 + (TTTC)n Simple_repeat Simple_repeat 2 169 0 263 250 171 0 chrY 7232079 7232155 -44281429 - AluJo/FRAM SINE Alu -45 257 169 1466 218 0 7 chrY 7232155 7232440 -44281144 - AluJb SINE Alu -29 283 1 1771 178 3 3 chrY 7233429 7233732 -44279852 - AluSx SINE Alu -9 303 1 22 70 0 0 chrY 7233825 7233868 -44279716 + AT_rich Low_complexity Low_complexity 1 43 0 25 0 0 0 chrY 7234189 7234214 -44279370 + AT_rich Low_complexity Low_complexity 1 25 0 1962 147 3 6 chrY 7234445 7234757 -44278827 - AluSx SINE Alu -1 311 1 817 209 55 0 chrY 7234769 7234951 -44278633 + AluJo SINE Alu 120 311 -1 201 74 0 0 chrY 7234951 7234978 -44278606 + (GGAA)n Simple_repeat Simple_repeat 2 28 0 1411 202 10 7 chrY 7235140 7235432 -44278152 - AluSx SINE Alu -9 303 11 21 36 0 0 chrY 7235759 7235787 -44277797 + AT_rich Low_complexity Low_complexity 1 28 0 211 302 166 12 chrY 7235866 7236035 -44277549 - MIR SINE MIR -11 251 57 39607 30 17 1 chrY 7236154 7242175 -44271409 + L1HS LINE L1 3 6153 -2 255 111 0 0 chrY 7242186 7242222 -44271362 - L1M4 LINE L1 -1598 4548 4513 407 295 0 0 chrY 7245240 7245345 -44268239 + FLAM_C SINE Alu 6 110 -33 383 119 17 0 chrY 7245357 7245416 -44268168 - MER1B DNA MER1_type -13 320 261 1063 209 81 16 chrY 7245570 7245828 -44267756 - MER1B DNA MER1_type -64 275 1 673 225 42 51 chrY 7245937 7246173 -44267411 + AluJb SINE Alu 1 234 -78 22 56 0 0 chrY 7246234 7246270 -44267314 + AT_rich Low_complexity Low_complexity 1 36 0 495 48 0 0 chrY 7246690 7246752 -44266832 + (TG)n Simple_repeat Simple_repeat 2 63 0 22 94 0 0 chrY 7246813 7246877 -44266707 + AT_rich Low_complexity Low_complexity 1 64 0 1509 142 12 24 chrY 7250727 7250980 -44262604 - AluSc SINE Alu -45 264 15 963 263 27 44 chrY 7251147 7251444 -44262140 - AluJo SINE Alu -10 292 1 27 0 0 0 chrY 7251551 7251578 -44262006 + AT_rich Low_complexity Low_complexity 1 27 0 2007 230 147 21 chrY 7252618 7253378 -44260206 - L1MB5 LINE L1 -13 6161 5306 796 119 21 21 chrY 7254465 7254608 -44258976 + AluSp/q SINE Alu 171 313 0 1405 201 29 7 chrY 7255478 7255756 -44257828 - AluSg SINE Alu -12 298 15 1380 213 17 3 chrY 7256273 7256573 -44257011 + AluJb SINE Alu 3 306 -6 234 0 0 0 chrY 7256612 7256638 -44256946 + (TTTA)n Simple_repeat Simple_repeat 2 27 0 43446 46 2 1 chrY 7256638 7262774 -44250810 - L1PA3 LINE L1 -6 6149 9 639 266 49 73 chrY 7263034 7263165 -44250419 - MLT1A1 LTR MaLR -14 351 218 1761 145 48 3 chrY 7263165 7263455 -44250129 - AluSc SINE Alu -6 303 1 639 266 49 73 chrY 7263455 7263609 -44249975 - MLT1A1 LTR MaLR -147 218 73 467 323 13 42 chrY 7263609 7263919 -44249665 - MER31-int LTR ERV1 -261 4675 4375 377 233 22 0 chrY 7264016 7264106 -44249478 - MER31-int LTR ERV1 -721 4215 4124 425 189 24 0 chrY 7264106 7264275 -44249309 + (TA)n Simple_repeat Simple_repeat 2 174 0 60 27 0 0 chrY 7264275 7264349 -44249235 + AT_rich Low_complexity Low_complexity 1 74 0 1071 206 0 83 chrY 7264362 7264615 -44248969 - AluJb SINE Alu -80 232 1 1137 256 40 47 chrY 7264643 7265072 -44248512 - MER31-int LTR ERV1 -835 4101 3676 1475 177 0 90 chrY 7265159 7265493 -44248091 - AluSx SINE Alu -8 304 1 1973 240 77 40 chrY 7265554 7266576 -44247008 - MER31-int LTR ERV1 -3570 1366 287 351 227 0 41 chrY 7266590 7266687 -44246897 + (CAGAGA)n Simple_repeat Simple_repeat 2 94 0 558 226 16 0 chrY 7267913 7268037 -44245547 + L1M2 LINE L1 13 138 -6711 3227 109 21 0 chrY 7268048 7268857 -44244727 + L1P2 LINE L1 4918 5745 -409 38950 157 5 5 chrY 7268861 7275598 -44237986 + HERVK22 LTR ERVK 52 6835 -2 2963 188 23 3 chrY 7275599 7276168 -44237416 + LTR22 LTR ERVK 1 580 0 615 259 7 0 chrY 7276779 7276918 -44236666 + MLT1D LTR MaLR 301 440 -65 435 337 80 37 chrY 7277071 7277472 -44236112 - L2 LINE L2 -460 2854 2437 2061 118 0 10 chrY 7277857 7278191 -44235393 + AluSg1 SINE Alu 1 331 0 238 342 45 0 chrY 7278208 7278319 -44235265 + MIR SINE MIR 47 162 -100 33 56 0 0 chrY 7278930 7278984 -44234600 + AT_rich Low_complexity Low_complexity 1 54 0 1749 143 15 58 chrY 7279151 7279480 -44234104 - MER52C LTR ERV1 0 1278 964 2806 45 48 0 chrY 7279950 7280342 -44233242 + L1PA4 LINE L1 5774 6182 0 291 28 0 0 chrY 7280825 7280861 -44232723 + (TG)n Simple_repeat Simple_repeat 2 37 0 1390 113 0 16 chrY 7280861 7281055 -44232529 - AluSg/x SINE Alu -25 285 95 1851 169 10 0 chrY 7281178 7281479 -44232105 + AluSx SINE Alu 1 304 -8 5169 133 91 7 chrY 7281481 7282392 -44231192 + L1PA7 LINE L1 3598 4585 -1561 288 130 0 0 chrY 7282399 7282445 -44231139 + (CA)n Simple_repeat Simple_repeat 2 47 0 6037 107 8 1 chrY 7282447 7283780 -44229804 + L1PA7 LINE L1 4807 6146 -8 214 356 144 0 chrY 7284115 7284233 -44229351 - L2 LINE L2 -1 3271 3137 305 272 41 14 chrY 7284365 7284512 -44229072 + L1M4 LINE L1 4457 4607 -1539 1759 157 21 7 chrY 7285995 7286282 -44227302 - AluSx SINE Alu -21 291 1 187 317 50 30 chrY 7286574 7286675 -44226909 + L2 LINE L2 3204 3306 -7 812 309 94 42 chrY 7286946 7287370 -44226214 + MLT1J LTR MaLR 19 464 -47 57 61 0 0 chrY 7287658 7287757 -44225827 + AT_rich Low_complexity Low_complexity 1 99 0 211 274 0 0 chrY 7287816 7287878 -44225706 + (TATATG)n Simple_repeat Simple_repeat 2 63 0 242 65 0 0 chrY 7288007 7288038 -44225546 + THE1A LTR MaLR 325 355 0 2351 112 11 0 chrY 7288041 7288390 -44225194 + THE1A-int LTR MaLR 4 356 -1224 1463 158 26 0 chrY 7288397 7288662 -44224922 + LTR19B LTR ERV1 307 578 -2 4165 176 7 47 chrY 7288664 7289557 -44224027 + HERVFH19I LTR ERV1 1 933 -6786 1001 137 34 64 chrY 7289524 7289728 -44223856 + HERVFH19I LTR ERV1 1113 1310 -4276 * 297 221 0 35 chrY 7289718 7289804 -44223780 + L1M4 LINE L1 5743 5825 -349 * 3428 30 0 0 chrY 7289728 7290129 -44223455 + L1PA3 LINE L1 5750 6150 -5 1846 134 34 3 chrY 7290156 7290484 -44223100 + HERVFH19I LTR ERV1 1300 1637 -3949 1622 180 23 3 chrY 7290485 7290791 -44222793 + AluSp SINE Alu 1 312 -1 189 0 0 0 chrY 7291495 7291516 -44222068 + (CAAAAA)n Simple_repeat Simple_repeat 2 22 0 432 286 24 8 chrY 7291856 7291982 -44221602 + MIR3 SINE MIR 66 193 -15 325 282 24 0 chrY 7292148 7292233 -44221351 - MIR SINE MIR -127 135 49 1055 194 26 77 chrY 7293111 7293462 -44220122 - MLT1B LTR MaLR -57 333 1 21 36 0 0 chrY 7293746 7293774 -44219810 + AT_rich Low_complexity Low_complexity 1 28 0 180 0 0 0 chrY 7294303 7294323 -44219261 + (T)n Simple_repeat Simple_repeat 1 20 0 227 267 17 17 chrY 7294742 7294802 -44218782 - MIR3 SINE MIR -54 154 95 28 29 0 0 chrY 7295334 7295369 -44218215 + AT_rich Low_complexity Low_complexity 1 35 0 1052 255 46 46 chrY 7296299 7296679 -44216905 + MLT1C LTR MaLR 36 418 -49 2136 118 0 0 chrY 7296679 7296983 -44216601 + AluY SINE Alu 1 304 -7 1052 255 46 46 chrY 7296983 7297034 -44216550 + MLT1C LTR MaLR 417 467 0 198 103 0 0 chrY 7297372 7297401 -44216183 + (ATG)n Simple_repeat Simple_repeat 2 30 0 413 376 24 10 chrY 7297681 7297886 -44215698 + L2 LINE L2 271 478 -2836 190 347 68 14 chrY 7297942 7298089 -44215495 + L2 LINE L2 639 793 -2521 1513 208 3 24 chrY 7298106 7298399 -44215185 - AluJo SINE Alu -19 293 7 997 262 23 30 chrY 7298569 7298874 -44214710 + MLT1E LTR MaLR 289 591 -2 23 0 0 0 chrY 7299611 7299634 -44213950 + AT_rich Low_complexity Low_complexity 1 23 0 290 45 23 0 chrY 7300600 7300644 -44212940 + (CAAAA)n Simple_repeat Simple_repeat 2 46 0 21 71 0 0 chrY 7301841 7301883 -44211701 + AT_rich Low_complexity Low_complexity 1 42 0 282 315 22 0 chrY 7302043 7302132 -44211452 - L2 LINE L2 0 3313 3223 225 0 0 0 chrY 7302700 7302725 -44210859 + (CA)n Simple_repeat Simple_repeat 2 26 0 801 236 0 22 chrY 7302726 7302904 -44210680 + FRAM SINE Alu 1 174 -2 1364 214 18 4 chrY 7302934 7303248 -44210336 - AluSx SINE Alu 0 318 1 1023 289 68 39 chrY 7303835 7304485 -44209099 + LTR65 LTR ERV1 1 669 0 252 0 0 0 chrY 7304704 7304732 -44208852 + (T)n Simple_repeat Simple_repeat 1 28 0 1248 210 70 3 chrY 7304732 7305018 -44208566 + AluSg SINE Alu 2 306 -4 307 314 164 48 chrY 7305412 7305791 -44207793 + L1MEc LINE L1 56 478 -5918 737 266 15 79 chrY 7305804 7306198 -44207386 - L1M2b LINE L1 -5277 1932 1564 1405 263 107 68 chrY 7306223 7306983 -44206601 - L1M2b LINE L1 -6420 789 1 1966 147 10 7 chrY 7307013 7307320 -44206264 - AluSx SINE Alu -4 308 1 1435 306 40 52 chrY 7307363 7308261 -44205323 - L1M3de LINE L1 -4600 2053 1167 341 238 56 24 chrY 7309068 7309194 -44204390 + MLT1F LTR MaLR 386 515 -27 1091 214 4 28 chrY 7309706 7309958 -44203626 + AluSx SINE Alu 58 303 -9 1371 206 14 31 chrY 7310005 7310296 -44203288 + AluSx SINE Alu 5 290 -22 821 144 29 0 chrY 7310329 7310502 -44203082 + GA-rich Low_complexity Low_complexity 3 180 0 351 211 0 0 chrY 7310518 7310608 -44202976 + GA-rich Low_complexity Low_complexity 2 91 0 23 33 0 0 chrY 7310679 7310709 -44202875 + AT_rich Low_complexity Low_complexity 1 30 0 384 284 52 3 chrY 7311236 7311366 -44202218 - AluJ/FLAM SINE Alu -215 87 1 255 294 11 22 chrY 7311507 7311599 -44201985 + MLT1E LTR MaLR 385 475 -118 824 347 20 32 chrY 7312665 7313111 -44200473 - L1M3de LINE L1 -5771 892 451 264 30 0 0 chrY 7313111 7313144 -44200440 + (TTG)n Simple_repeat Simple_repeat 2 34 0 824 347 20 32 chrY 7313144 7313201 -44200383 - L1M3de LINE L1 -6212 451 395 1688 185 0 14 chrY 7313236 7313545 -44200039 + AluSg SINE Alu 1 305 0 1528 201 37 62 chrY 7313745 7314182 -44199402 - MSTB LTR MaLR 0 426 1 2135 139 0 3 chrY 7314514 7314817 -44198767 + AluSx SINE Alu 1 302 -10 297 367 30 18 chrY 7314846 7315328 -44198256 - L1M3de LINE L1 -5214 1439 605 731 234 12 24 chrY 7315354 7315521 -44198063 + FRAM SINE Alu 1 165 -1 1362 229 3 14 chrY 7315583 7315871 -44197713 - AluSx SINE Alu -25 287 3 1486 197 31 3 chrY 7316335 7316624 -44196960 + AluSg SINE Alu 1 297 -13 1147 201 61 31 chrY 7318570 7318979 -44194605 + L1MB5 LINE L1 5306 5744 -439 1048 259 51 12 chrY 7319006 7319338 -44194246 + L1MB5 LINE L1 5817 6161 -13 27 0 0 0 chrY 7320703 7320730 -44192854 + AT_rich Low_complexity Low_complexity 1 27 0 800 296 19 23 chrY 7320838 7321098 -44192486 + AluJo SINE Alu 1 259 -53 1729 171 0 4 chrY 7322527 7322838 -44190746 - AluSg SINE Alu 0 310 1 22 35 0 0 chrY 7323788 7323817 -44189767 + AT_rich Low_complexity Low_complexity 1 29 0 21 0 0 0 chrY 7324062 7324083 -44189501 + AT_rich Low_complexity Low_complexity 1 21 0 1665 171 0 10 chrY 7324368 7324661 -44188923 - AluSg SINE Alu -20 290 1 1647 151 41 0 chrY 7326665 7326959 -44186625 + AluSc SINE Alu 1 305 0 2050 132 3 3 chrY 7327439 7327743 -44185841 - AluSc SINE Alu -5 304 1 22 70 0 0 chrY 7329010 7329053 -44184531 + AT_rich Low_complexity Low_complexity 1 43 0 278 207 0 0 chrY 7329370 7329428 -44184156 + Charlie3 DNA MER1_type 2632 2689 -21 503 250 0 0 chrY 7329440 7329548 -44184036 - FLAM_C SINE Alu -33 110 3 1791 166 14 0 chrY 7334549 7334563 -44179021 - AluSx SINE Alu -12 300 288 180 111 0 0 chrY 7334563 7334590 -44178994 + (TG)n Simple_repeat Simple_repeat 2 28 0 1791 166 14 0 chrY 7334590 7334871 -44178713 - AluSx SINE Alu -24 288 1 23 0 0 0 chrY 7334936 7334959 -44178625 + AT_rich Low_complexity Low_complexity 1 23 0 1973 134 0 7 chrY 7335165 7335448 -44178136 + AluSq SINE Alu 3 283 -30 381 315 118 45 chrY 7336172 7336461 -44177123 + L2 LINE L2 2196 2505 -809 261 0 0 0 chrY 7337551 7337580 -44176004 + (TG)n Simple_repeat Simple_repeat 2 30 0 * 284 47 47 31 chrY 7337577 7337641 -44175943 + (TTTTG)n Simple_repeat Simple_repeat 3 67 0 218 297 27 27 chrY 7337745 7337819 -44175765 - MER5A DNA MER1_type -73 116 43 335 292 34 56 chrY 7338172 7338439 -44175145 + L1M4 LINE L1 5257 5517 -661 22 0 0 0 chrY 7338560 7338582 -44175002 + AT_rich Low_complexity Low_complexity 1 22 0 524 218 82 0 chrY 7340534 7340644 -44172940 + MER41E LTR ERV1 1 119 -393 2912 169 35 56 chrY 7341000 7341710 -44171874 - LTR1 LTR ERV1 -90 695 1 250 208 42 0 chrY 7341880 7341928 -44171656 - LTR33A LTR ERVL -343 180 131 609 183 13 39 chrY 7342191 7342344 -44171240 - LTR7 LTR ERV1 0 450 302 774 134 92 14 chrY 7342388 7342546 -44171038 - LTR7 LTR ERV1 -232 218 1 3376 114 19 39 chrY 7342546 7343114 -44170470 - HERVH LTR ERV1 0 7713 7157 * 15583 156 7 30 chrY 7343109 7345831 -44167753 - HERVH LTR ERV1 -1699 6014 3357 12253 162 5 7 chrY 7345831 7347866 -44165718 - HERVH LTR ERV1 -4883 2830 800 1871 207 20 48 chrY 7347888 7348391 -44165193 - HERVH LTR ERV1 -7254 459 3 1208 203 197 29 chrY 7348393 7348778 -44164806 - LTR7 LTR ERV1 0 450 1 191 67 0 0 chrY 7348886 7348916 -44164668 - L2 LINE L2 0 3313 3284 1863 156 13 3 chrY 7349044 7349352 -44164232 - AluY SINE Alu 0 311 1 4600 94 7 0 chrY 7349677 7350260 -44163324 + LTR14C LTR ERVK 1 587 0 752 250 134 41 chrY 7350351 7350619 -44162965 - AluJo SINE Alu -1 311 19 21 0 0 0 chrY 7352963 7352984 -44160600 + AT_rich Low_complexity Low_complexity 1 21 0 2780 230 57 63 chrY 7355011 7356740 -44156844 + L1MA8 LINE L1 4558 6268 -23 25 40 0 20 chrY 7356746 7356761 -44156823 + AT_rich Low_complexity Low_complexity 1 15 -34 7376 71 1 1 chrY 7356761 7357775 -44155809 + L1PA5 LINE L1 5137 6150 -4 25 40 0 20 chrY 7357775 7357809 -44155775 + AT_rich Low_complexity Low_complexity 15 49 0 237 203 0 16 chrY 7357857 7357921 -44155663 + L1MC4 LINE L1 6647 6709 -1333 385 295 82 70 chrY 7357944 7358055 -44155529 + L1M4c LINE L1 1045 1153 -5231 1091 243 23 43 chrY 7358055 7358359 -44155225 + AluJb SINE Alu 5 302 0 385 295 82 70 chrY 7358359 7358562 -44155022 + L1M4c LINE L1 1153 1363 -5021 213 297 5 49 chrY 7359274 7359389 -44154195 + GA-rich Low_complexity Low_complexity 1 109 0 372 88 0 0 chrY 7361349 7361406 -44152178 + (CA)n Simple_repeat Simple_repeat 2 58 0 186 128 0 0 chrY 7363925 7363964 -44149620 + (CCA)n Simple_repeat Simple_repeat 1 39 0 1201 168 2 1 chrY 7365849 7378331 -44135253 - ALR/Alpha Satellite centromeric 0 12494 1 1145 159 1 1 chrY 7378343 7382843 -44130741 - ALR/Alpha Satellite centromeric 0 4502 1 873 114 0 0 chrY 7382843 7382966 -44130618 + L1P LINE L1 16 138 -6008 255 274 0 0 chrY 7383344 7383428 -44130156 + (CA)n Simple_repeat Simple_repeat 1 84 0 439 306 0 17 chrY 7383443 7383623 -44129961 + GA-rich Low_complexity Low_complexity 2 178 0 186 192 0 0 chrY 7384716 7384768 -44128816 + (CA)n Simple_repeat Simple_repeat 1 52 0 439 267 7 7 chrY 7384774 7384909 -44128675 + GA-rich Low_complexity Low_complexity 2 136 0 859 142 0 0 chrY 7385431 7385551 -44128033 - 5S rRNA rRNA 0 121 2 281 221 10 0 chrY 7386298 7386402 -44127182 + (CA)n Simple_repeat Simple_repeat 2 106 0 2029 184 83 34 chrY 7386409 7386876 -44126708 + LTR2B LTR ERV1 1 490 0 230 206 14 0 chrY 7386912 7386985 -44126599 + GA-rich Low_complexity Low_complexity 2 75 0 301 211 26 0 chrY 7387002 7387078 -44126506 + GA-rich Low_complexity Low_complexity 6 83 0 684 149 8 8 chrY 7387896 7388017 -44125567 - 5S rRNA rRNA 0 121 1 7700 157 28 82 chrY 7388407 7390271 -44123313 - L1M1 LINE L1 -4326 3239 1477 * 9770 207 25 4 chrY 7390268 7392537 -44121047 - L1P LINE L1 -815 5331 3016 232 264 0 0 chrY 7393479 7393551 -44120033 + MER103 DNA DNA 12 83 -83 285 267 0 50 chrY 7393589 7393709 -44119875 + L2 LINE L2 1971 2084 -1230 2360 206 25 4 chrY 7394840 7395354 -44118230 - L1PB4 LINE L1 -12 6144 5620 300 205 64 13 chrY 7395629 7395707 -44117877 + L2 LINE L2 3191 3272 0 2075 187 104 38 chrY 7395922 7396451 -44117133 + LTR6A LTR ERV1 1 564 0 205 267 0 0 chrY 7396994 7397039 -44116545 + L2 LINE L2 3261 3305 -8 259 243 171 0 chrY 7397160 7397230 -44116354 + L2 LINE L2 3230 3311 -2 22 56 0 0 chrY 7397992 7398028 -44115556 + AT_rich Low_complexity Low_complexity 1 36 0 464 293 155 11 chrY 7398360 7398704 -44114880 - MLT1H1 LTR MaLR -120 422 32 2340 93 0 3 chrY 7399459 7399771 -44113813 - AluY SINE Alu 0 311 1 317 138 0 31 chrY 7399771 7399830 -44113754 - L1P LINE L1 -806 5361 5304 3659 172 30 13 chrY 7399834 7400578 -44113006 + L1PA16 LINE L1 5390 6145 -21 11204 214 98 15 chrY 7400589 7403493 -44110091 + L1M1 LINE L1 17 3159 -4406 * 32373 85 5 0 chrY 7403484 7408111 -44105473 - L1P LINE L1 -1491 4655 7 5075 264 61 17 chrY 7408125 7410010 -44103574 + L1M1 LINE L1 3288 5090 -2475 2025 147 0 7 chrY 7410010 7410334 -44103250 + AluSx SINE Alu 1 312 0 5075 264 61 17 chrY 7410334 7410703 -44102881 + L1M1 LINE L1 5090 5442 -2123 1689 229 33 14 chrY 7410703 7411123 -44102461 + MSTA LTR MaLR 1 428 0 6626 230 32 10 chrY 7411123 7412738 -44100846 + MSTA-int LTR MaLR 1 1651 0 1657 221 64 12 chrY 7412738 7413145 -44100439 + MSTA LTR MaLR 1 428 0 5075 264 61 17 chrY 7413145 7413494 -44100090 + L1M1 LINE L1 5442 5774 -1791 1904 146 6 32 chrY 7413494 7413810 -44099774 + AluSg SINE Alu 3 310 0 5075 264 61 17 chrY 7413810 7414117 -44099467 + L1M1 LINE L1 5774 6333 -1232 674 84 13 0 chrY 7414128 7414386 -44099198 - CER Satellite Satellite 0 261 1 4950 193 25 7 chrY 7414390 7414807 -44098777 + L1MA2 LINE L1 4850 5258 -1046 1787 159 39 62 chrY 7414807 7415135 -44098449 + THE1C LTR MaLR 1 320 -55 1990 139 3 0 chrY 7415135 7415422 -44098162 + AluSg1 SINE Alu 2 289 -20 1787 159 39 62 chrY 7415422 7415477 -44098107 + THE1C LTR MaLR 320 375 0 4950 193 25 7 chrY 7415477 7416491 -44097093 + L1MA2 LINE L1 5258 6304 0 688 176 103 0 chrY 7416518 7416654 -44096930 - MER4B LTR ERV1 -460 150 1 1876 159 3 0 chrY 7416977 7417318 -44096266 + AluSx SINE Alu 1 342 0 685 305 0 0 chrY 7417924 7418098 -44095486 + MER41D LTR ERV1 384 557 0 7472 321 33 19 chrY 7419264 7419425 -44094159 + PRIMA41-int LTR ERV1 1578 1735 -6021 5154 151 87 11 chrY 7419425 7420326 -44093258 - LTR5 LTR ERVK 0 969 1 7472 321 33 19 chrY 7420326 7423065 -44090519 + PRIMA41-int LTR ERV1 1735 4586 -3170 2332 139 3 27 chrY 7423065 7423274 -44090310 - THE1B LTR MaLR 0 364 166 1734 156 4 0 chrY 7423274 7423550 -44090034 + AluSx SINE Alu 23 299 -13 2332 139 3 27 chrY 7423550 7423713 -44089871 - THE1B LTR MaLR -198 166 1 7472 321 33 19 chrY 7423713 7425314 -44088270 + PRIMA41-int LTR ERV1 4586 6163 -1593 495 195 0 0 chrY 7425624 7425742 -44087842 + (TA)n Simple_repeat Simple_repeat 2 119 0 183 42 0 0 chrY 7425745 7425769 -44087815 + (T)n Simple_repeat Simple_repeat 1 24 0 25 0 0 0 chrY 7427052 7427077 -44086507 + AT_rich Low_complexity Low_complexity 1 25 0 7431 35 3 0 chrY 7427077 7428594 -44084990 - L1PA3 LINE L1 0 6155 4636 5604 52 0 0 chrY 7428596 7429326 -44084258 + L1PA3 LINE L1 3900 4629 -1517 3720 254 110 25 chrY 7429329 7431207 -44082377 - L1 LINE L1 -1213 4933 2896 24 32 0 0 chrY 7431649 7431680 -44081904 + AT_rich Low_complexity Low_complexity 1 31 0 9314 141 11 3 chrY 7432497 7432756 -44080828 - L1PA7 LINE L1 -5 6464 6209 1894 152 61 3 chrY 7432756 7433052 -44080532 - AluSp SINE Alu 0 313 1 9314 141 11 3 chrY 7433052 7435154 -44078430 - L1PA7 LINE L1 -260 6209 4101 3706 246 36 40 chrY 7435168 7437003 -44076581 - L1PA7 LINE L1 -4636 1815 10 645 343 28 44 chrY 7437238 7437667 -44075917 + L1MC4a LINE L1 5491 5912 -1896 329 247 28 67 chrY 7437901 7438079 -44075505 - L1M4 LINE L1 -2554 3592 3422 527 211 11 15 chrY 7438124 7438395 -44075189 + GA-rich Low_complexity Low_complexity 1 270 0 1995 162 15 56 chrY 7438680 7439088 -44074496 + MSTD LTR MaLR 4 394 -2 983 98 8 0 chrY 7439367 7439544 -44074040 + BSR/Beta Satellite Satellite 1 178 -56 473 250 81 25 chrY 7439575 7439735 -44073849 + MIR SINE MIR 27 195 -67 324 163 100 12 chrY 7439735 7439815 -44073769 - MLT1I LTR MaLR 0 409 323 1922 136 0 0 chrY 7439850 7440129 -44073455 - AluY SINE Alu -32 279 1 270 297 77 56 chrY 7440148 7440343 -44073241 - MLT1I LTR MaLR -97 312 114 1710 171 0 3 chrY 7440355 7440647 -44072937 + AluSx SINE Alu 2 292 -20 231 263 94 41 chrY 7440804 7440975 -44072609 + LTR41 LTR ERVL 2 181 -592 321 246 27 27 chrY 7441667 7441777 -44071807 + LTR41 LTR ERVL 658 767 -6 276 349 38 0 chrY 7442060 7442166 -44071418 - MIR SINE MIR -75 133 24 488 204 64 63 chrY 7442663 7442883 -44070701 + MLT1H LTR MaLR 71 321 -228 529 299 129 48 chrY 7442995 7443208 -44070376 + L1M4 LINE L1 4957 5151 -995 2209 136 8 8 chrY 7443208 7443561 -44070023 + THE1A LTR MaLR 1 353 -2 529 299 129 48 chrY 7443561 7443641 -44069943 + L1M4 LINE L1 5151 5223 -923 1929 141 3 0 chrY 7443641 7443931 -44069653 + AluSp SINE Alu 1 291 -22 529 299 129 48 chrY 7443931 7444031 -44069553 + L1M4 LINE L1 5223 5383 -763 195 189 27 0 chrY 7444239 7444276 -44069308 + MER5A DNA MER1_type 15 52 -137 333 331 36 7 chrY 7444737 7444876 -44068708 + L1ME4a LINE L1 5975 6117 -4 1459 248 25 14 chrY 7445872 7446231 -44067353 + MLT1A1 LTR MaLR 1 363 -2 378 205 20 72 chrY 7447061 7447256 -44066328 - L1MEc LINE L1 -4158 2238 2054 2334 135 40 13 chrY 7447266 7447644 -44065940 + MSTA LTR MaLR 3 390 -38 1873 123 0 30 chrY 7447644 7447944 -44065640 - AluSc SINE Alu -18 291 1 26 0 0 0 chrY 7447962 7447988 -44065596 + AT_rich Low_complexity Low_complexity 1 26 0 5961 66 3 9 chrY 7447988 7448843 -44064741 - L1PA4 LINE L1 0 6155 5344 232 195 0 0 chrY 7448843 7448884 -44064700 + MSTA LTR MaLR 386 426 0 453 157 0 0 chrY 7448950 7449020 -44064564 - AluJ/FLAM SINE Alu -241 71 2 2023 126 3 3 chrY 7449052 7449354 -44064230 - AluSx SINE Alu -10 302 1 3004 269 75 21 chrY 7449370 7450566 -44063018 - L1MEc LINE L1 -4901 1495 235 348 290 0 11 chrY 7452677 7452770 -44060814 + L1 LINE L1 14 105 -5850 445 235 20 0 chrY 7452772 7452874 -44060710 + FLAM_C SINE Alu 3 106 -37 294 231 51 26 chrY 7452874 7452952 -44060632 + L1 LINE L1 106 185 -5770 428 263 105 12 chrY 7452952 7453123 -44060461 + L1 LINE L1 4434 4620 -1414 686 311 79 41 chrY 7453157 7453496 -44060088 + L1MA9 LINE L1 459 816 -5139 1952 137 3 0 chrY 7453496 7453803 -44059781 + AluSg1 SINE Alu 1 308 -1 686 311 79 41 chrY 7453803 7453855 -44059729 + L1MA9 LINE L1 816 865 -5090 2774 245 61 47 chrY 7453857 7455104 -44058480 + L1MA9 LINE L1 3977 5240 -794 * 41133 71 3 2 chrY 7455096 7461241 -44052343 - L1PA4 LINE L1 0 6155 7 2941 235 65 16 chrY 7461250 7462157 -44051427 + L1MA9 LINE L1 5225 6175 -25 311 179 63 74 chrY 7462181 7462262 -44051322 - L1MC4 LINE L1 -1339 6703 6622 312 27 0 0 chrY 7462262 7462299 -44051285 + (TG)n Simple_repeat Simple_repeat 2 38 0 311 179 63 74 chrY 7462299 7462312 -44051272 - L1MC4 LINE L1 -1420 6622 6610 26 0 0 0 chrY 7462348 7462374 -44051210 + AT_rich Low_complexity Low_complexity 1 26 0 197 425 0 0 chrY 7462838 7462925 -44050659 - L2 LINE L2 -488 2826 2740 189 292 45 34 chrY 7463351 7463440 -44050144 + MER5A DNA MER1_type 30 119 -70 691 184 0 0 chrY 7463443 7463557 -44050027 + AluJb SINE Alu 2 115 -197 418 255 0 39 chrY 7464421 7464574 -44049010 + CT-rich Low_complexity Low_complexity 3 149 0 384 226 0 0 chrY 7464620 7464744 -44048840 + (TG)n Simple_repeat Simple_repeat 2 125 0 657 238 0 4 chrY 7465814 7466062 -44047522 + CT-rich Low_complexity Low_complexity 1 246 0 458 279 112 29 chrY 7466093 7466433 -44047151 + LSAU Satellite Satellite 131 498 0 329 210 36 123 chrY 7467648 7467786 -44045798 + LSAU Satellite Satellite 2 127 -371 200 280 0 0 chrY 7469063 7469113 -44044471 + GA-rich Low_complexity Low_complexity 1 50 0 536 184 0 25 chrY 7470207 7470365 -44043219 + CT-rich Low_complexity Low_complexity 4 157 0 352 277 28 29 chrY 7470444 7470756 -44042828 + LSAU Satellite Satellite 141 498 0 2580 216 16 54 chrY 7471075 7471945 -44041639 + LTR5 LTR ERVK 133 969 0 1204 161 14 89 chrY 7471947 7472227 -44041357 + Tigger1 DNA MER2_type 2160 2418 0 894 196 6 0 chrY 7472231 7472399 -44041185 - AluJo/FRAM SINE Alu -9 303 135 2207 88 10 0 chrY 7472399 7472704 -44040880 - AluY SINE Alu -3 308 1 218 235 20 0 chrY 7473046 7473097 -44040487 + (TTG)n Simple_repeat Simple_repeat 2 53 0 768 240 114 38 chrY 7473103 7473420 -44040164 - L1PB4 LINE L1 -9 6147 5807 354 107 0 0 chrY 7473454 7473510 -44040074 + (TTTTC)n Simple_repeat Simple_repeat 3 58 0 331 223 48 39 chrY 7474230 7474333 -44039251 + MER89 LTR ERV1 323 426 -133 288 0 0 0 chrY 7474485 7474517 -44039067 + (CA)n Simple_repeat Simple_repeat 1 32 0 1462 190 18 0 chrY 7474653 7474932 -44038652 + AluSx SINE Alu 1 284 -28 420 231 0 37 chrY 7474953 7475061 -44038523 + AluJb SINE Alu 130 233 -69 400 138 12 12 chrY 7475113 7475193 -44038391 + CT-rich Low_complexity Low_complexity 1 80 0 186 209 0 0 chrY 7475207 7475250 -44038334 + CT-rich Low_complexity Low_complexity 4 46 0 393 140 0 0 chrY 7475254 7475311 -44038273 - AluJ/FLAM SINE Alu -242 60 4 733 214 133 85 chrY 7475387 7475544 -44038040 - AluJo SINE Alu -16 286 138 207 0 0 0 chrY 7475544 7475567 -44038017 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 1942 121 3 0 chrY 7475571 7475853 -44037731 - AluSp SINE Alu -30 283 1 733 214 133 85 chrY 7475853 7475961 -44037623 - AluJo SINE Alu -166 136 3 228 48 48 71 chrY 7476027 7476039 -44037545 - Alu SINE Alu -8 292 281 225 0 0 0 chrY 7476039 7476064 -44037520 + (ATTG)n Simple_repeat Simple_repeat 2 26 0 228 48 48 71 chrY 7476064 7476093 -44037491 - Alu SINE Alu -19 281 252 846 233 0 89 chrY 7476558 7476850 -44036734 + L1PA13 LINE L1 5888 6153 -10 242 116 23 0 chrY 7476853 7476896 -44036688 + GA-rich Low_complexity Low_complexity 1 44 0 1433 163 48 17 chrY 7476990 7477284 -44036300 - AluSx SINE Alu 0 312 10 315 114 0 0 chrY 7477389 7477433 -44036151 + AluSp/q SINE Alu 240 283 -20 278 25 0 25 chrY 7477451 7477491 -44036093 + (TAAA)n Simple_repeat Simple_repeat 2 40 0 1508 187 3 7 chrY 7477560 7477854 -44035730 + AluSg SINE Alu 8 300 -10 900 78 13 26 chrY 7477857 7478010 -44035574 + (GAAAA)n Simple_repeat Simple_repeat 2 152 0 381 191 0 0 chrY 7478035 7478145 -44035439 + CT-rich Low_complexity Low_complexity 2 111 0 597 194 0 0 chrY 7478172 7478342 -44035242 + CT-rich Low_complexity Low_complexity 2 171 0 211 194 32 16 chrY 7478345 7478407 -44035177 + (TCTCTG)n Simple_repeat Simple_repeat 4 66 0 762 175 0 0 chrY 7478409 7478586 -44034998 + CT-rich Low_complexity Low_complexity 1 177 0 693 181 0 0 chrY 7478615 7478792 -44034792 + CT-rich Low_complexity Low_complexity 2 178 0 431 201 7 0 chrY 7478803 7478942 -44034642 + CT-rich Low_complexity Low_complexity 1 140 0 302 337 55 30 chrY 7478942 7479141 -44034443 - L1M4c LINE L1 -5078 1306 1103 465 238 8 24 chrY 7479179 7479305 -44034279 + MER39B LTR ERV1 284 407 -246 1812 115 0 21 chrY 7479442 7479751 -44033833 + AluSx SINE Alu 1 303 0 222 208 0 0 chrY 7480874 7480927 -44032657 + (CTG)n Simple_repeat Simple_repeat 1 53 0 527 201 6 0 chrY 7481016 7481195 -44032389 + CT-rich Low_complexity Low_complexity 1 180 0 562 183 6 11 chrY 7481219 7481399 -44032185 + CT-rich Low_complexity Low_complexity 2 180 0 328 293 113 63 chrY 7481412 7481791 -44031793 - HAL1 LINE L1 -1230 1277 880 435 162 0 0 chrY 7481799 7481898 -44031686 + CT-rich Low_complexity Low_complexity 2 100 0 277 171 43 0 chrY 7481899 7481969 -44031615 + (TCTG)n Simple_repeat Simple_repeat 2 74 0 630 189 0 0 chrY 7481972 7482152 -44031432 + CT-rich Low_complexity Low_complexity 1 180 0 186 348 79 0 chrY 7482455 7482544 -44031040 + L2 LINE L2 2481 2576 -738 283 290 0 28 chrY 7482559 7482666 -44030918 - L1MC/D LINE L1 -591 5768 5665 183 42 0 0 chrY 7483203 7483227 -44030357 + (GGGTG)n Simple_repeat Simple_repeat 3 26 0 847 154 160 5 chrY 7483456 7483644 -44029940 - AluSg/x SINE Alu 0 312 96 189 0 0 0 chrY 7484409 7484430 -44029154 + (TTTA)n Simple_repeat Simple_repeat 2 22 0 2166 117 0 3 chrY 7484437 7484728 -44028856 - AluSc SINE Alu -18 291 2 5204 40 2 0 chrY 7487439 7488066 -44025518 - L1P LINE L1 -932 5214 4587 4752 53 0 4 chrY 7488067 7488639 -44024945 + L1PA3 LINE L1 5593 6155 0 247 288 24 40 chrY 7488736 7488861 -44024723 - LTR54B LTR ERV1 -337 161 39 622 160 0 130 chrY 7489205 7489374 -44024210 + AluJb SINE Alu 137 283 -29 1788 147 14 0 chrY 7489460 7489752 -44023832 - AluSp SINE Alu -17 296 1 23 54 0 0 chrY 7489759 7489796 -44023788 + AT_rich Low_complexity Low_complexity 1 37 0 2278 70 0 3 chrY 7489810 7490094 -44023490 - AluY SINE Alu -28 283 1 1143 253 92 82 chrY 7490098 7490695 -44022889 - L1M4 LINE L1 -946 5200 4598 360 211 84 23 chrY 7491311 7491433 -44022151 + L1MD2 LINE L1 5706 5816 -305 314 278 174 40 chrY 7492275 7492574 -44021010 - L1MC4 LINE L1 -109 7933 7595 198 71 0 0 chrY 7492579 7492607 -44020977 + (CAT)n Simple_repeat Simple_repeat 1 28 0 333 171 41 82 chrY 7493487 7493633 -44019951 + (GAGTG)n Simple_repeat Simple_repeat 4 143 0 872 172 18 6 chrY 7493798 7493961 -44019623 + L1MC1 LINE L1 6169 6333 0 207 260 0 14 chrY 7493980 7494053 -44019531 + L2 LINE L2 1721 1792 -1522 534 284 93 60 chrY 7494155 7494904 -44018680 + L2 LINE L2 2400 3295 -18 1881 141 20 10 chrY 7494980 7495279 -44018305 + AluJb SINE Alu 1 302 -10 2663 108 13 0 chrY 7495354 7495752 -44017832 + L1MA5A LINE L1 5742 6144 -153 1878 123 14 10 chrY 7495753 7496045 -44017539 + AluSx SINE Alu 6 298 -14 1563 162 30 43 chrY 7496245 7496548 -44017036 + AluJo SINE Alu 1 299 -13 2236 107 0 0 chrY 7496633 7496923 -44016661 - AluSg SINE Alu -20 290 1 2089 119 10 6 chrY 7496933 7497244 -44016340 - AluSx SINE Alu 0 312 1 2228 110 7 0 chrY 7497888 7498187 -44015397 - AluSg SINE Alu -9 301 1 1054 140 45 30 chrY 7498287 7498487 -44015097 + MER3 DNA MER1_type 1 203 -6 1823 190 67 36 chrY 7498585 7498894 -44014690 + MER63B DNA MER1_type 1 328 -734 1575 185 49 3 chrY 7498894 7499181 -44014403 - AluJo SINE Alu -12 300 1 1823 190 67 36 chrY 7499181 7499292 -44014292 + MER63B DNA MER1_type 328 434 -2 298 225 0 72 chrY 7503512 7503623 -44009961 + MER45C DNA AcHobo 488 590 -363 1260 249 65 32 chrY 7505762 7506195 -44007389 + L1MD2 LINE L1 5895 6341 -18 290 359 51 19 chrY 7506617 7506773 -44006811 + MIR3 SINE MIR 33 193 -15 1134 173 9 2 chrY 7506885 7511915 -44001669 + ALR/Alpha Satellite centromeric 1 5066 -75 235 146 0 91 chrY 7512309 7512364 -44001220 + LTR66 LTR ERVL 390 439 -171 8065 28 3 0 chrY 7512398 7514016 -43999568 + L1PA3 LINE L1 4535 6155 0 1043 174 6 1 chrY 7514031 7518791 -43994793 - ALR/Alpha Satellite centromeric 0 4780 1 9604 43 1 0 chrY 7518791 7519953 -43993631 - L1P LINE L1 -1535 4611 3449 1103 175 6 6 chrY 7519953 7523980 -43989604 - ALR/Alpha Satellite centromeric 0 4030 1 1111 30 0 0 chrY 7523980 7524111 -43989473 - L1P LINE L1 -1572 4574 4444 8198 20 0 3 chrY 7524111 7525627 -43987957 + L1PA2 LINE L1 4637 6149 -6 1210 161 5 2 chrY 7525652 7533479 -43980105 - ALR/Alpha Satellite centromeric -4 7852 1 262 175 165 0 chrY 7533517 7533614 -43979970 - ALR/Alpha Satellite centromeric -47 124 12 1108 155 7 2 chrY 7533905 7534846 -43978738 - ALR/Alpha Satellite centromeric 0 945 1 1285 154 4 4 chrY 7534851 7535091 -43978493 - L1PA3 LINE L1 0 6155 5916 1088 156 5 1 chrY 7535373 7538435 -43975149 + ALR/Alpha Satellite centromeric 1 3075 -80 1178 156 3 1 chrY 7538535 7542303 -43971281 - ALR/Alpha Satellite centromeric 0 3772 1 1115 158 9 6 chrY 7542314 7546488 -43967096 - ALR/Alpha Satellite centromeric 0 6268 695 6847 60 5 0 chrY 7546488 7547870 -43965714 - L1PA3 LINE L1 -3 6152 4767 1115 158 9 6 chrY 7547870 7548567 -43965017 - ALR/Alpha Satellite centromeric -5573 695 1 17118 64 5 3 chrY 7548572 7551646 -43961938 - L1PA3 LINE L1 0 6155 3076 4495 87 1 5 chrY 7551646 7553524 -43960060 - L1PA3 LINE L1 -4199 1947 1 1114 165 3 2 chrY 7553527 7556884 -43956700 - ALR/Alpha Satellite centromeric -1 3359 1 4935 54 3 0 chrY 7556985 7558127 -43955457 - L1PA3 LINE L1 -242 5913 4769 1112 155 8 0 chrY 7558127 7559480 -43954104 - ALR/Alpha Satellite centromeric -4 1362 1 1082 163 5 1 chrY 7559626 7567356 -43946228 - ALR/Alpha Satellite centromeric -1 7756 1 1096 164 5 0 chrY 7567370 7572040 -43941544 - ALR/Alpha Satellite centromeric 0 4690 1 2662 49 0 0 chrY 7572052 7572360 -43941224 + AluYb8 SINE Alu 1 308 -10 1120 165 6 1 chrY 7572363 7576597 -43936987 - ALR/Alpha Satellite centromeric 0 4252 1 486 155 0 0 chrY 7576603 7576700 -43936884 + (CATTC)n Simple_repeat Simple_repeat 1 97 0 332 161 32 0 chrY 7576715 7576777 -43936807 - AluS SINE Alu -14 288 225 870 148 0 0 chrY 7576789 7576951 -43936633 + (CACTC)n Simple_repeat Simple_repeat 1 162 0 204 111 0 0 chrY 7576962 7576998 -43936586 + (CATTC)n Simple_repeat Simple_repeat 3 38 0 252 234 31 0 chrY 7577006 7577070 -43936514 - AluJ/FRAM SINE Alu -12 290 225 503 171 16 0 chrY 7577070 7577193 -43936391 + (CATTC)n Simple_repeat Simple_repeat 2 126 0 277 229 0 0 chrY 7577193 7577254 -43936330 - AluJ/FRAM SINE Alu -14 288 228 894 153 0 0 chrY 7577286 7577463 -43936121 + (CATTC)n Simple_repeat Simple_repeat 3 179 0 * 935 142 6 0 chrY 7577449 7577625 -43935959 + (CACTC)n Simple_repeat Simple_repeat 1 177 0 819 169 0 0 chrY 7577638 7577810 -43935774 + (CACTC)n Simple_repeat Simple_repeat 1 172 0 891 174 4 0 chrY 7577890 7578394 -43935190 + (CATTC)n Satellite Satellite 1 506 0 298 222 16 0 chrY 7578394 7578457 -43935127 - AluJ/FRAM SINE Alu -14 288 225 236 177 32 0 chrY 7578457 7578519 -43935065 + (CATTC)n Simple_repeat Simple_repeat 2 65 0 1134 100 0 0 chrY 7578636 7578827 -43934757 + (CATTC)n Satellite Satellite 1 371 0 1134 100 0 0 chrY 7578827 7579007 -43934577 + (CATTC)n Satellite Satellite 1 180 0 338 175 16 0 chrY 7579068 7579131 -43934453 - AluJ/FRAM SINE Alu -14 288 225 1140 84 0 0 chrY 7579141 7579307 -43934277 + (CATTC)n Simple_repeat Simple_repeat 4 169 0 681 190 0 0 chrY 7579312 7579486 -43934098 + (CACTC)n Simple_repeat Simple_repeat 4 177 0 275 214 0 0 chrY 7579508 7579564 -43934020 - AluS SINE Alu -22 278 223 971 126 0 6 chrY 7579713 7579887 -43933697 + (CATTC)n Simple_repeat Simple_repeat 2 174 0 283 250 29 0 chrY 7579890 7579958 -43933626 - AluS SINE Alu -8 292 223 1011 139 0 0 chrY 7579971 7579995 -43933589 + (CACTC)n Simple_repeat Simple_repeat 1 204 0 1011 139 0 0 chrY 7579995 7580175 -43933409 + (CACTC)n Simple_repeat Simple_repeat 1 180 0 753 159 0 0 chrY 7580229 7580392 -43933192 + (CATTC)n Simple_repeat Simple_repeat 5 167 0 318 172 31 0 chrY 7580396 7580460 -43933124 - AluJ/FRAM SINE Alu -12 290 225 360 138 0 0 chrY 7580477 7580542 -43933042 + (CACTC)n Simple_repeat Simple_repeat 1 65 0 672 136 0 0 chrY 7580742 7580867 -43932717 + (GAATG)n Simple_repeat Simple_repeat 1 125 0 329 188 31 0 chrY 7580879 7580943 -43932641 + AluS SINE Alu 224 289 -12 1026 96 0 0 chrY 7580984 7581141 -43932443 + (GAGTG)n Simple_repeat Simple_repeat 4 160 0 314 172 31 0 chrY 7581156 7581220 -43932364 + Alu SINE Alu 223 288 -12 1326 56 0 0 chrY 7581221 7581401 -43932183 + (GAATG)n Simple_repeat Simple_repeat 1 180 0 257 250 31 0 chrY 7581418 7581482 -43932102 + AluS SINE Alu 223 288 -12 192 217 0 0 chrY 7581482 7581528 -43932056 + (GAATG)n Simple_repeat Simple_repeat 1 46 0 708 145 0 0 chrY 7581600 7581731 -43931853 + (GAATG)n Simple_repeat Simple_repeat 5 135 0 286 222 32 0 chrY 7581743 7581806 -43931778 + AluS SINE Alu 225 289 -12 1377 85 4 4 chrY 7581806 7582142 -43931442 + (GAATG)n Satellite Satellite 2 513 0 297 206 0 0 chrY 7782153 7782250 -43731334 + (GAATG)n Satellite Satellite 4 100 0 551 182 6 0 chrY 7782264 7782434 -43731150 + (GAATG)n Satellite Satellite 4 174 0 676 168 9 0 chrY 7782472 7782710 -43730874 + (GAATG)n Satellite Satellite 1 240 0 839 184 2 0 chrY 7782730 7783156 -43730428 + (GAATG)n Satellite Satellite 1 427 0 549 203 0 0 chrY 7783189 7783366 -43730218 + (GAATG)n Satellite Satellite 4 180 0 729 176 0 0 chrY 7783425 7783688 -43729896 + (GAATG)n Satellite Satellite 1 263 0 521 233 4 0 chrY 7783712 7783984 -43729600 + (GAATG)n Satellite Satellite 1 273 0 612 196 0 0 chrY 7783998 7784177 -43729407 + (GAATG)n Satellite Satellite 2 180 0 1101 167 1 0 chrY 7784193 7784902 -43728682 + (GAATG)n Satellite Satellite 1 710 0 795 180 0 3 chrY 7784943 7785309 -43728275 + (GAATG)n Satellite Satellite 1 364 0 678 195 0 0 chrY 7785330 7785676 -43727908 + (GAATG)n Satellite Satellite 1 346 0 486 216 0 0 chrY 7785695 7785871 -43727713 + (GAATG)n Satellite Satellite 4 179 0 675 205 5 3 chrY 7785907 7786294 -43727290 + (GAATG)n Satellite Satellite 1 388 0 1093 150 2 6 chrY 7786327 7787166 -43726418 + (GAATG)n Satellite Satellite 4 1011 0 204 150 25 0 chrY 7787166 7787206 -43726378 + (AATTG)n Simple_repeat Simple_repeat 2 42 0 366 224 0 0 chrY 7787210 7787357 -43726227 + (GAATG)n Satellite Satellite 4 150 0 735 190 0 0 chrY 7787390 7787747 -43725837 + (GAATG)n Satellite Satellite 1 357 0 654 179 0 0 chrY 7787780 7787953 -43725631 + (GAATG)n Satellite Satellite 3 175 0 747 169 0 0 chrY 7787983 7788160 -43725424 + (GAATG)n Satellite Satellite 4 180 0 693 195 0 7 chrY 7788173 7788846 -43724738 + (GAATG)n Satellite Satellite 1 668 0 939 156 0 4 chrY 7788866 7789225 -43724359 + (GAATG)n Satellite Satellite 1 536 0 258 205 0 0 chrY 7789280 7789358 -43724226 + (GAATG)n Satellite Satellite 3 80 0 773 154 0 16 chrY 7789422 7789604 -43723980 + (GAATG)n Satellite Satellite 1 179 0 222 180 0 0 chrY 7789623 7789684 -43723900 + (GAATG)n Satellite Satellite 5 65 0 801 153 0 0 chrY 7789703 7789879 -43723705 + (GAATG)n Satellite Satellite 4 179 0 885 171 0 0 chrY 7789957 7790355 -43723229 + (GAATG)n Satellite Satellite 1 398 0 445 211 6 6 chrY 7790391 7790571 -43723013 + (GAATG)n Satellite Satellite 1 180 0 836 173 6 4 chrY 7790627 7791113 -43722471 + (GAATG)n Satellite Satellite 1 487 0 432 179 0 0 chrY 7791161 7791278 -43722306 + (GAATG)n Satellite Satellite 4 120 0 651 178 0 0 chrY 7791296 7791465 -43722119 + (GAATG)n Satellite Satellite 1 169 0 730 171 4 4 chrY 7791477 7791719 -43721865 + (GAATG)n Satellite Satellite 1 242 0 945 172 0 0 chrY 7791745 7792046 -43721538 + (GAATG)n Satellite Satellite 1 301 0 1086 140 0 0 chrY 7792066 7792411 -43721173 + (GAATG)n Satellite Satellite 1 345 0 810 157 3 0 chrY 7792463 7792813 -43720771 + (GAATG)n Satellite Satellite 1 351 0 468 223 0 0 chrY 7792834 7793009 -43720575 + (GAATG)n Satellite Satellite 5 179 0 870 156 0 0 chrY 7793033 7793487 -43720097 + (GAATG)n Satellite Satellite 1 454 0 839 154 0 15 chrY 7793529 7793855 -43719729 + (GAATG)n Satellite Satellite 1 321 0 709 197 3 3 chrY 7793903 7794312 -43719272 + (GAATG)n Satellite Satellite 1 409 0 1158 85 0 0 chrY 7794358 7794535 -43719049 + (GAATG)n Satellite Satellite 4 180 0 1434 72 0 2 chrY 7794557 7794905 -43718679 + (GAATG)n Satellite Satellite 1 525 0 213 267 12 0 chrY 7794910 7794996 -43718588 + (AATAG)n Simple_repeat Simple_repeat 3 89 0 600 196 0 0 chrY 7794998 7795177 -43718407 + (GAATG)n Satellite Satellite 1 179 0 879 188 1 0 chrY 7795213 7796319 -43717265 + (GAATG)n Satellite Satellite 1 1107 0 705 199 0 0 chrY 7796332 7796765 -43716819 + (GAATG)n Satellite Satellite 1 433 0 468 214 0 0 chrY 7796777 7796950 -43716634 + (GAATG)n Satellite Satellite 2 174 0 939 152 0 4 chrY 7796966 7797326 -43716258 + (GAATG)n Satellite Satellite 2 538 0 816 151 0 0 chrY 7797352 7797531 -43716053 + (GAATG)n Satellite Satellite 1 179 0 684 193 0 0 chrY 7797578 7798015 -43715569 + (GAATG)n Satellite Satellite 1 437 0 960 124 0 0 chrY 7798033 7798211 -43715373 + (GAATG)n Satellite Satellite 1 178 0 795 171 0 0 chrY 7798285 7798532 -43715052 + (GAATG)n Satellite Satellite 1 247 0 840 156 0 0 chrY 7798547 7798727 -43714857 + (GAATG)n Satellite Satellite 1 180 0 714 143 0 0 chrY 7798747 7798894 -43714690 + (GAATG)n Satellite Satellite 4 150 0 1032 138 0 9 chrY 7798957 7799315 -43714269 + (GAATG)n Satellite Satellite 4 528 0 213 138 62 0 chrY 7799319 7799384 -43714200 - HSATII Satellite Satellite -82 88 20 655 164 6 6 chrY 7799394 7799571 -43714013 + (GAATG)n Satellite Satellite 4 180 0 798 116 6 28 chrY 7799594 7799775 -43713809 + (GAATG)n Satellite Satellite 4 180 0 366 197 0 0 chrY 7799793 7799910 -43713674 + (GAATG)n Satellite Satellite 4 120 0 564 200 0 0 chrY 7799943 7800123 -43713461 + (GAATG)n Satellite Satellite 1 180 0 872 128 0 23 chrY 7800169 7800388 -43713196 + (GAATG)n Satellite Satellite 1 214 0 689 163 6 0 chrY 7800423 7800601 -43712983 + (GAATG)n Satellite Satellite 2 180 0 864 167 3 3 chrY 7800638 7801839 -43711745 + (GAATG)n Satellite Satellite 1 1201 0 375 186 0 0 chrY 7801892 7801989 -43711595 + (GAATG)n Satellite Satellite 4 100 0 609 184 0 0 chrY 7802053 7802211 -43711373 + (GAATG)n Satellite Satellite 2 159 0 909 156 0 0 chrY 7802228 7802622 -43710962 + (GAATG)n Satellite Satellite 1 394 0 813 188 1 0 chrY 7802667 7803410 -43710174 + (GAATG)n Satellite Satellite 1 744 0 954 204 3 3 chrY 7803421 7804158 -43709426 + (GAATG)n Satellite Satellite 1 737 0 1023 132 0 4 chrY 7804206 7804563 -43709021 + (GAATG)n Satellite Satellite 2 535 0 1065 153 0 0 chrY 7804613 7804925 -43708659 + (GAATG)n Satellite Satellite 1 312 0 396 221 0 0 chrY 7804958 7805107 -43708477 + (GAATG)n Satellite Satellite 2 150 0 792 173 0 0 chrY 7805124 7805303 -43708281 + (GAATG)n Satellite Satellite 1 179 0 923 141 3 14 chrY 7805324 7805686 -43707898 + (GAATG)n Satellite Satellite 1 358 0 660 172 0 0 chrY 7805705 7805879 -43707705 + (GAATG)n Satellite Satellite 4 177 0 429 223 0 0 chrY 7805944 7806110 -43707474 + (GAATG)n Satellite Satellite 3 168 0 786 179 0 0 chrY 7806123 7806606 -43706978 + (GAATG)n Satellite Satellite 1 483 0 939 151 0 20 chrY 7806638 7807002 -43706582 + (GAATG)n Satellite Satellite 5 529 0 735 191 0 9 chrY 7807061 7807603 -43705981 + (GAATG)n Satellite Satellite 1 536 0 564 148 0 0 chrY 7807636 7807758 -43705826 + (GAATG)n Satellite Satellite 4 125 0 923 171 1 4 chrY 7807780 7808595 -43704989 + (GAATG)n Satellite Satellite 1 812 0 729 158 0 0 chrY 7808627 7808851 -43704733 + (GAATG)n Satellite Satellite 1 224 0 486 216 0 0 chrY 7808863 7809034 -43704550 + (GAATG)n Satellite Satellite 4 174 0 746 182 3 0 chrY 7809084 7809431 -43704153 + (GAATG)n Satellite Satellite 1 348 0 999 168 2 0 chrY 7809475 7809985 -43703599 + (GAATG)n Satellite Satellite 1 511 0 876 143 7 4 chrY 7810039 7810331 -43703253 + (GAATG)n Satellite Satellite 1 293 0 906 163 1 4 chrY 7810389 7810930 -43702654 + (GAATG)n Satellite Satellite 2 717 0 975 103 0 0 chrY 7810965 7811120 -43702464 + (GAATG)n Satellite Satellite 4 158 0 356 217 13 0 chrY 7811139 7811296 -43702288 + (GAATG)n Satellite Satellite 1 159 0 885 163 0 0 chrY 7811363 7811725 -43701859 + (GAATG)n Satellite Satellite 1 362 0 588 195 0 0 chrY 7811776 7811950 -43701634 + (GAATG)n Satellite Satellite 2 175 0 789 170 3 0 chrY 7811966 7812327 -43701257 + (GAATG)n Satellite Satellite 1 362 0 510 220 0 0 chrY 7812365 7812542 -43701042 + (GAATG)n Satellite Satellite 4 180 0 749 165 0 16 chrY 7812561 7812887 -43700697 + (GAATG)n Satellite Satellite 1 320 0 981 142 0 9 chrY 7812900 7813256 -43700328 + (GAATG)n Satellite Satellite 4 525 0 249 198 0 0 chrY 7813336 7813417 -43700167 + (GAATG)n Satellite Satellite 4 84 0 993 150 3 4 chrY 7813468 7813988 -43699596 + (GAATG)n Satellite Satellite 2 697 0 761 146 0 20 chrY 7814009 7814269 -43699315 + (GAATG)n Satellite Satellite 1 254 0 420 227 0 0 chrY 7814289 7814465 -43699119 + (GAATG)n Satellite Satellite 5 180 0 669 194 0 0 chrY 7814484 7814664 -43698920 + (GAATG)n Satellite Satellite 1 180 0 600 208 4 0 chrY 7814714 7815230 -43698354 + (GAATG)n Satellite Satellite 1 518 0 716 194 2 0 chrY 7815243 7815679 -43697905 + (GAATG)n Satellite Satellite 1 437 0 721 147 4 22 chrY 7815719 7815956 -43697628 + (GAATG)n Satellite Satellite 1 232 0 957 99 12 6 chrY 7815993 7816164 -43697420 + (GAATG)n Satellite Satellite 4 175 0 582 184 0 0 chrY 7816271 7816450 -43697134 + (GAATG)n Satellite Satellite 2 180 0 411 216 0 0 chrY 7816471 7816638 -43696946 + (GAATG)n Satellite Satellite 4 170 0 966 154 0 6 chrY 7816671 7817483 -43696101 + (GAATG)n Satellite Satellite 1 806 0 612 143 0 0 chrY 7817561 7817687 -43695897 + (GAATG)n Satellite Satellite 5 130 0 525 199 0 0 chrY 7817727 7817888 -43695696 + (GAATG)n Satellite Satellite 4 164 0 860 184 2 0 chrY 7817927 7818551 -43695033 + (GAATG)n Satellite Satellite 1 625 0 594 189 0 0 chrY 7818586 7818761 -43694823 + (GAATG)n Satellite Satellite 4 178 0 960 150 0 0 chrY 7818779 7819045 -43694539 + (GAATG)n Satellite Satellite 1 266 0 407 225 6 0 chrY 7819118 7819287 -43694297 + (GAATG)n Satellite Satellite 2 171 0 405 172 0 0 chrY 7819353 7819446 -43694138 + (GAATG)n Satellite Satellite 3 95 0 831 195 0 6 chrY 7819463 7820151 -43693433 + (GAATG)n Satellite Satellite 1 684 0 692 183 2 9 chrY 7820167 7820718 -43692866 + (GAATG)n Satellite Satellite 1 547 0 633 185 0 0 chrY 7820740 7820913 -43692671 + (GAATG)n Satellite Satellite 4 176 0 378 239 0 0 chrY 7820932 7821108 -43692476 + (GAATG)n Satellite Satellite 4 179 0 831 147 0 0 chrY 7821141 7821318 -43692266 + (GAATG)n Satellite Satellite 4 180 0 1200 140 0 2 chrY 7821392 7821986 -43691598 + (GAATG)n Satellite Satellite 1 772 0 1200 89 0 0 chrY 7821986 7822166 -43691418 + (GAATG)n Satellite Satellite 1 180 0 939 148 0 0 chrY 7822300 7822648 -43690936 + (GAATG)n Satellite Satellite 1 348 0 441 167 0 0 chrY 7822715 7822817 -43690767 + (GAATG)n Satellite Satellite 4 105 0 750 174 0 0 chrY 7822856 7823028 -43690556 + (GAATG)n Satellite Satellite 3 174 0 1080 152 0 7 chrY 7823075 7823612 -43689972 + (GAATG)n Satellite Satellite 4 708 0 453 226 0 0 chrY 7823660 7823837 -43689747 + (GAATG)n Satellite Satellite 4 180 0 291 141 0 0 chrY 7823885 7823949 -43689635 + (GAATG)n Satellite Satellite 2 65 0 678 184 0 0 chrY 7823961 7824140 -43689444 + (GAATG)n Satellite Satellite 1 179 0 797 160 0 19 chrY 7824160 7824425 -43689159 + (GAATG)n Satellite Satellite 1 259 0 537 208 0 0 chrY 7824445 7824623 -43688961 + (GAATG)n Satellite Satellite 3 180 0 870 158 4 0 chrY 7824660 7824906 -43688678 + (GAATG)n Satellite Satellite 1 247 0 753 168 0 0 chrY 7824955 7825134 -43688450 + (GAATG)n Satellite Satellite 1 179 0 943 174 2 10 chrY 7825149 7825863 -43687721 + (GAATG)n Satellite Satellite 4 884 0 1278 134 0 4 chrY 7825882 7826479 -43687105 + (GAATG)n Satellite Satellite 2 771 0 548 205 6 0 chrY 7826496 7826662 -43686922 + (GAATG)n Satellite Satellite 4 170 0 599 192 6 0 chrY 7826725 7826902 -43686682 + (GAATG)n Satellite Satellite 3 180 0 1116 126 0 0 chrY 7826941 7827402 -43686182 + (GAATG)n Satellite Satellite 1 461 0 1404 110 0 10 chrY 7827419 7827913 -43685671 + (GAATG)n Satellite Satellite 1 666 0 747 196 0 0 chrY 7827935 7828283 -43685301 + (GAATG)n Satellite Satellite 1 348 0 800 174 1 5 chrY 7828310 7829018 -43684566 + (GAATG)n Satellite Satellite 1 705 0 1028 155 5 10 chrY 7829048 7830329 -43683255 + (GAATG)n Satellite Satellite 4 1425 0 252 218 0 0 chrY 7830364 7830451 -43683133 + (GAATG)n Satellite Satellite 4 90 0 720 165 0 0 chrY 7830515 7830673 -43682911 + (GAATG)n Satellite Satellite 2 159 0 897 155 2 7 chrY 7830689 7831045 -43682539 + (GAATG)n Satellite Satellite 3 528 0 419 174 9 0 chrY 7831079 7831194 -43682390 + (GAATG)n Satellite Satellite 4 119 0 744 179 0 0 chrY 7831217 7831576 -43682008 + (GAATG)n Satellite Satellite 1 359 0 734 174 0 11 chrY 7831631 7831997 -43681587 + (GAATG)n Satellite Satellite 1 361 0 198 256 0 0 chrY 7832019 7832156 -43681428 + (GAATG)n Satellite Satellite 2 138 0 1071 167 2 5 chrY 7832197 7832622 -43680962 + (GAATG)n Satellite Satellite 1 602 0 1071 112 0 0 chrY 7832622 7832801 -43680783 + (GAATG)n Satellite Satellite 1 179 0 270 204 0 0 chrY 7832887 7832975 -43680609 + (GAATG)n Satellite Satellite 2 89 0 731 200 0 10 chrY 7833016 7833511 -43680073 + (GAATG)n Satellite Satellite 1 489 0 624 200 0 0 chrY 7833531 7833711 -43679873 + (GAATG)n Satellite Satellite 1 180 0 1062 126 0 1 chrY 7833722 7834215 -43679369 + (GAATG)n Satellite Satellite 1 672 0 753 175 0 0 chrY 7834267 7834773 -43678811 + (GAATG)n Satellite Satellite 1 506 0 810 183 0 0 chrY 7834791 7835304 -43678280 + (GAATG)n Satellite Satellite 1 513 0 1110 146 0 0 chrY 7835321 7835673 -43677911 + (GAATG)n Satellite Satellite 1 352 0 864 183 0 1 chrY 7835766 7836484 -43677100 + (GAATG)n Satellite Satellite 1 717 0 918 139 0 0 chrY 7836500 7836727 -43676857 + (GAATG)n Satellite Satellite 1 227 0 612 202 0 0 chrY 7836767 7837100 -43676484 + (GAATG)n Satellite Satellite 1 333 0 828 154 0 0 chrY 7837143 7837499 -43676085 + (GAATG)n Satellite Satellite 1 356 0 421 186 7 7 chrY 7837520 7837660 -43675924 + (GAATG)n Satellite Satellite 3 142 0 612 196 0 0 chrY 7837672 7837851 -43675733 + (GAATG)n Satellite Satellite 2 180 0 443 196 0 27 chrY 7837897 7838081 -43675503 + (GAATG)n Satellite Satellite 2 180 0 921 168 0 9 chrY 7838122 7838549 -43675035 + (GAATG)n Satellite Satellite 1 422 0 699 183 0 0 chrY 7838561 7838741 -43674843 + (GAATG)n Satellite Satellite 1 180 0 777 162 0 0 chrY 7838777 7838950 -43674634 + (GAATG)n Satellite Satellite 2 174 0 1016 106 6 0 chrY 7838976 7839155 -43674429 + (GAATG)n Satellite Satellite 1 180 0 879 171 0 0 chrY 7839179 7839536 -43674048 + (GAATG)n Satellite Satellite 1 357 0 478 198 11 0 chrY 7839569 7839746 -43673838 + (GAATG)n Satellite Satellite 2 180 0 1014 120 0 0 chrY 7839769 7839944 -43673640 + (GAATG)n Satellite Satellite 4 178 0 873 187 0 0 chrY 7839967 7840322 -43673262 + (GAATG)n Satellite Satellite 1 355 0 675 178 0 0 chrY 7840346 7840593 -43672991 + (GAATG)n Satellite Satellite 1 247 0 1107 145 1 5 chrY 7840646 7841466 -43672118 + (GAATG)n Satellite Satellite 1 988 0 972 121 0 0 chrY 7841466 7841639 -43671945 + (GAATG)n Satellite Satellite 2 174 0 206 259 9 0 chrY 7841660 7841776 -43671808 + (AATAG)n Simple_repeat Simple_repeat 5 121 0 957 153 0 0 chrY 7841794 7842154 -43671430 + (GAATG)n Satellite Satellite 1 360 0 771 170 0 0 chrY 7842195 7842699 -43670885 + (GAATG)n Satellite Satellite 1 504 0 973 174 2 2 chrY 7842728 7843188 -43670396 + (GAATG)n Satellite Satellite 1 460 0 738 161 0 0 chrY 7843202 7843376 -43670208 + (GAATG)n Satellite Satellite 4 177 0 1101 128 0 0 chrY 7843409 7843779 -43669805 + (GAATG)n Satellite Satellite 1 370 0 1020 129 0 14 chrY 7843820 7844181 -43669403 + (GAATG)n Satellite Satellite 1 356 0 543 201 0 0 chrY 7844219 7844398 -43669186 + (GAATG)n Satellite Satellite 2 180 0 741 172 0 0 chrY 7844414 7844594 -43668990 + (GAATG)n Satellite Satellite 1 180 0 798 186 2 14 chrY 7844615 7845057 -43668527 + (GAATG)n Satellite Satellite 1 436 0 515 201 6 0 chrY 7845068 7845247 -43668337 + (GAATG)n Satellite Satellite 1 180 0 587 174 0 22 chrY 7845261 7845445 -43668139 + (GAATG)n Satellite Satellite 1 180 0 1149 155 0 2 chrY 7845481 7846306 -43667278 + (GAATG)n Satellite Satellite 1 1001 0 813 149 0 0 chrY 7846369 7846544 -43667040 + (GAATG)n Satellite Satellite 1 175 0 885 162 0 11 chrY 7846563 7847025 -43666559 + (GAATG)n Satellite Satellite 1 456 0 599 199 3 14 chrY 7847037 7847390 -43666194 + (GAATG)n Satellite Satellite 1 348 0 569 194 6 0 chrY 7847417 7847582 -43666002 + (GAATG)n Satellite Satellite 4 169 0 765 158 0 0 chrY 7847600 7847777 -43665807 + (GAATG)n Satellite Satellite 4 180 0 1239 161 0 1 chrY 7847790 7848372 -43665212 + (GAATG)n Satellite Satellite 1 761 0 849 180 0 0 chrY 7848405 7848739 -43664845 + (GAATG)n Satellite Satellite 1 334 0 782 148 6 0 chrY 7848776 7848952 -43664632 + (GAATG)n Satellite Satellite 3 179 0 798 157 0 0 chrY 7848975 7849221 -43664363 + (GAATG)n Satellite Satellite 1 246 0 1005 126 0 11 chrY 7849235 7849596 -43663988 + (GAATG)n Satellite Satellite 1 533 0 687 203 0 0 chrY 7849679 7850222 -43663362 + (GAATG)n Satellite Satellite 1 543 0 861 140 0 0 chrY 7850234 7850398 -43663186 + (GAATG)n Satellite Satellite 2 165 0 282 132 0 0 chrY 7850410 7850463 -43663121 + (GAATG)n Satellite Satellite 2 54 0 747 174 5 0 chrY 7850480 7850917 -43662667 + (GAATG)n Satellite Satellite 1 439 0 947 124 6 0 chrY 7850942 7851119 -43662465 + (GAATG)n Satellite Satellite 3 180 0 357 191 0 0 chrY 7851142 7851252 -43662332 + (GAATG)n Satellite Satellite 5 114 0 735 169 0 0 chrY 7851272 7851449 -43662135 + (GAATG)n Satellite Satellite 3 179 0 180 111 0 0 chrY 7851505 7851532 -43662052 + (GAGTG)n Simple_repeat Simple_repeat 4 30 0 951 130 0 0 chrY 7851551 7852024 -43661560 + (GAATG)n Satellite Satellite 1 473 0 450 207 0 0 chrY 7852036 7852200 -43661384 + (GAATG)n Satellite Satellite 1 164 0 852 162 3 0 chrY 7852230 7852574 -43661010 + (GAATG)n Satellite Satellite 1 345 0 1239 119 0 0 chrY 7852595 7852954 -43660630 + (GAATG)n Satellite Satellite 1 359 0 1016 132 3 6 chrY 7852969 7853504 -43660080 + (GAATG)n Satellite Satellite 1 712 0 804 163 0 0 chrY 7853546 7853794 -43659790 + (GAATG)n Satellite Satellite 1 248 0 2172 165 13 10 chrY 7853800 7854194 -43659390 - Tigger2a DNA MER2_type -39 395 1 505 214 62 24 chrY 7854233 7854413 -43659171 - MLT1I LTR MaLR -3 406 244 1773 212 49 16 chrY 7854783 7855235 -43658349 - MLT1C LTR MaLR 0 467 1 707 328 21 18 chrY 7855430 7855759 -43657825 + MLT1I LTR MaLR 5 334 -75 429 309 62 29 chrY 7855779 7856051 -43657533 + L1ME3A LINE L1 5597 5877 -293 597 106 28 28 chrY 7856396 7856576 -43657008 + (TA)n Simple_repeat Simple_repeat 1 180 0 37 39 0 0 chrY 7856576 7856627 -43656957 + AT_rich Low_complexity Low_complexity 1 51 0 617 85 34 34 chrY 7856627 7856803 -43656781 + (TTATA)n Simple_repeat Simple_repeat 5 180 0 329 75 118 0 chrY 7856770 7856931 -43656653 + (TA)n Simple_repeat Simple_repeat 1 180 0 * 286 340 65 1 chrY 7857630 7857891 -43655693 - L1MDa LINE L1 -860 1630 1397 705 259 109 47 chrY 7857941 7858062 -43655522 - L1MDa LINE L1 -4918 1201 1089 1837 152 3 34 chrY 7858062 7858359 -43655225 - AluSx SINE Alu -24 288 1 705 259 109 47 chrY 7858359 7858816 -43654768 - L1MDa LINE L1 -5030 1089 587 829 235 0 24 chrY 7858977 7859147 -43654437 + FAM SINE Alu 1 166 -9 10608 21 0 1 chrY 7859194 7861261 -43652323 - L1HS LINE L1 0 6155 4090 7117 17 1 2 chrY 7861260 7862108 -43651476 + L1HS LINE L1 5291 6139 -16 * 244 0 56 0 chrY 7862108 7862144 -43651440 + (TAAA)n Simple_repeat Simple_repeat 3 40 0 7117 17 1 2 chrY 7862144 7862161 -43651423 + L1HS LINE L1 6139 6155 0 317 155 0 17 chrY 7862258 7862316 -43651268 - FAM SINE Alu -83 92 36 2235 113 0 25 chrY 7862447 7862851 -43650733 + AluSx SINE Alu 3 398 0 335 250 19 37 chrY 7863585 7863693 -43649891 + HAL1b LINE L1 1243 1348 0 2215 133 0 0 chrY 7863706 7864014 -43649570 + AluSx SINE Alu 1 308 -4 229 351 30 61 chrY 7864617 7864748 -43648836 + MIR SINE MIR 21 147 -115 870 113 0 0 chrY 7864749 7864882 -43648702 + (TGGA)n Simple_repeat Simple_repeat 1 133 0 2053 114 0 0 chrY 7864898 7865162 -43648422 + AluSx SINE Alu 33 296 -16 250 98 39 0 chrY 7865163 7865214 -43648370 + (TAGA)n Simple_repeat Simple_repeat 2 54 0 337 246 235 11 chrY 7865427 7865614 -43647970 - HAL1 LINE L1 -154 2353 2125 453 230 29 83 chrY 7865615 7865810 -43647774 + MER20B DNA MER1_type 1 197 -22 407 206 9 19 chrY 7865827 7865934 -43647650 - HAL1 LINE L1 -378 2129 2024 * 2378 249 103 81 chrY 7865930 7866214 -43647370 - HAL1 LINE L1 -1044 1463 1187 2173 137 10 0 chrY 7866214 7866521 -43647063 - AluSx SINE Alu -2 310 1 2378 249 103 81 chrY 7866521 7867625 -43645959 - HAL1 LINE L1 -1320 1187 45 983 281 67 66 chrY 7867665 7868017 -43645567 + L2 LINE L2 2660 3006 -307 2329 122 0 0 chrY 7868017 7868328 -43645256 - AluY SINE Alu 0 311 1 983 281 67 66 chrY 7868328 7868589 -43644995 + L2 LINE L2 3006 3265 -48 675 232 310 12 chrY 7868592 7868632 -43644952 - MLT2B1 LTR ERVL 0 520 493 234 0 0 0 chrY 7868632 7868658 -43644926 + (TG)n Simple_repeat Simple_repeat 1 26 0 675 232 310 12 chrY 7868658 7868940 -43644644 - MLT2B1 LTR ERVL -27 493 102 555 222 0 0 chrY 7868940 7869066 -43644518 + L1PB4 LINE L1 6031 6156 0 27 0 0 0 chrY 7869066 7869093 -43644491 + AT_rich Low_complexity Low_complexity 1 27 0 2325 112 0 0 chrY 7869160 7869465 -43644119 + AluY SINE Alu 1 305 -6 277 243 0 0 chrY 7869486 7869556 -43644028 - MLT2B1 LTR ERVL -450 70 1 16166 186 17 20 chrY 7869618 7873838 -43639746 + L1PA13 LINE L1 1 4209 -2588 2212 142 0 0 chrY 7873838 7874148 -43639436 - AluSx SINE Alu -2 310 1 16166 186 17 20 chrY 7874148 7875425 -43638159 + L1PA13 LINE L1 4209 5489 -1308 2118 114 37 0 chrY 7875427 7875724 -43637860 + AluSp SINE Alu 3 310 -3 435 137 0 0 chrY 7875724 7875797 -43637787 + (GA)n Simple_repeat Simple_repeat 1 73 0 333 117 0 0 chrY 7875809 7875869 -43637715 + (CAGG)n Simple_repeat Simple_repeat 2 61 0 6000 110 19 1 chrY 7875871 7877184 -43636400 + L1PA13 LINE L1 5484 6813 -1 2314 110 3 0 chrY 7878853 7879161 -43634423 - AluSx SINE Alu -1 311 3 2162 77 42 3 chrY 7880470 7880755 -43632829 + AluY SINE Alu 16 311 0 2227 68 0 7 chrY 7880834 7881115 -43632469 + AluY SINE Alu 1 279 -32 260 119 75 0 chrY 7881115 7881182 -43632402 + GA-rich Low_complexity Low_complexity 3 74 0 1907 58 0 0 chrY 7881250 7881473 -43632111 + AluY SINE Alu 1 223 -88 34897 58 41 2 chrY 7881497 7885972 -43627612 - L1P LINE L1 -1496 4650 1 1329 232 10 7 chrY 7885992 7886281 -43627303 - AluJb SINE Alu -22 290 1 637 179 72 68 chrY 7886664 7886871 -43626713 + MER3 DNA MER1_type 1 208 -1 2231 175 37 30 chrY 7887023 7887451 -43626133 + Tigger2a DNA MER2_type 1 431 -3 194 376 47 0 chrY 7887616 7887701 -43625883 + L2 LINE L2 3167 3255 -17 1078 111 0 17 chrY 7887709 7887945 -43625639 + (GGAA)n Simple_repeat Simple_repeat 1 231 0 815 261 31 0 chrY 7887976 7888171 -43625413 + MLT2B1 LTR ERVL 1 201 -319 6037 109 55 2 chrY 7888176 7889063 -43624521 - L1P3 LINE L1 -4839 1622 689 12145 106 3 14 chrY 7889066 7891655 -43621929 + L1PA7 LINE L1 3565 6154 0 547 251 0 82 chrY 7891680 7891851 -43621733 + MLT2B1 LTR ERVL 228 384 -136 * 1081 241 78 4 chrY 7891840 7892116 -43621468 + MLT2B1 LTR ERVL 275 520 0 2116 185 3 8 chrY 7892665 7893054 -43620530 + MLT1B LTR MaLR 4 390 0 1389 153 5 1 chrY 7893063 7893292 -43620292 + MLT1B LTR MaLR 162 467 0 1097 215 18 9 chrY 7893293 7893521 -43620063 + MLT1B LTR MaLR 159 388 -2 189 303 176 14 chrY 7894821 7894963 -43618621 + L2 LINE L2 1047 1211 -2103 1079 257 12 4 chrY 7895017 7895258 -43618326 + Tigger7 DNA MER2_type 1 243 -490 257 220 0 0 chrY 7895262 7895312 -43618272 + Tigger7 DNA MER2_type 2259 2308 -183 247 317 58 0 chrY 7895932 7896052 -43617532 + LTR16C LTR ERVL 365 491 0 1320 174 0 5 chrY 7896166 7896390 -43617194 + AluSg/x SINE Alu 87 309 -3 2073 138 10 56 chrY 7896551 7896941 -43616643 - L1PA16 LINE L1 -9 6157 5786 366 239 9 46 chrY 7897505 7897614 -43615970 - MLT1D LTR MaLR -399 106 2 1456 217 75 53 chrY 7897794 7897826 -43615758 + MLT1D LTR MaLR 2 32 -473 1676 150 75 31 chrY 7897826 7898185 -43615399 - THE1C LTR MaLR 0 375 1 1456 217 75 53 chrY 7898185 7898645 -43614939 + MLT1D LTR MaLR 32 505 0 2735 143 19 15 chrY 7898958 7899421 -43614163 - MER4C LTR ERV1 0 465 1 2550 126 6 1 chrY 7900107 7900496 -43613088 + MLT1B LTR MaLR 1 467 0 1138 229 4 0 chrY 7900497 7900728 -43612856 + MLT1B LTR MaLR 159 390 0 2062 132 7 7 chrY 7901943 7902239 -43611345 - AluSg1 SINE Alu -13 296 1 1900 158 14 0 chrY 7902243 7902540 -43611044 - AluSx SINE Alu -11 301 1 183 139 0 0 chrY 7902848 7902884 -43610700 + (TG)n Simple_repeat Simple_repeat 1 36 0 1509 207 29 32 chrY 7902945 7903424 -43610160 + MLT1A1 LTR MaLR 1 365 0 1034 195 9 9 chrY 7903424 7903634 -43609950 + MLT1B LTR MaLR 158 367 -23 3943 141 134 23 chrY 7903636 7904969 -43608615 - pTR5 LTR ERV1 0 2606 1524 904 231 31 0 chrY 7904994 7905219 -43608365 + MLT1B LTR MaLR 159 390 0 1828 171 31 20 chrY 7906394 7906755 -43606829 - MLT1A1 LTR MaLR 0 626 1 340 219 20 60 chrY 7906769 7906920 -43606664 + (TATATG)n Simple_repeat Simple_repeat 2 146 0 24 67 0 0 chrY 7907866 7907911 -43605673 + AT_rich Low_complexity Low_complexity 1 45 0 1662 158 4 11 chrY 7909829 7910089 -43603495 + AluSq SINE Alu 18 275 -38 452 32 16 0 chrY 7910103 7910165 -43603419 + (TAAA)n Simple_repeat Simple_repeat 2 64 0 1845 214 77 0 chrY 7910478 7910879 -43602705 - MSTB1 LTR MaLR 0 432 1 246 335 59 30 chrY 7910905 7911108 -43602476 - L2 LINE L2 -993 2321 2113 3259 177 14 67 chrY 7911224 7911954 -43601630 + LTR8 LTR ERV1 1 691 0 324 203 0 14 chrY 7912032 7912106 -43601478 + LTR30 LTR ERV1 548 620 -102 4313 155 26 19 chrY 7912245 7912849 -43600735 - MER4E LTR ERV1 0 779 167 1696 132 0 84 chrY 7912849 7913145 -43600439 + AluSx SINE Alu 29 299 -13 4313 155 26 19 chrY 7913145 7913313 -43600271 - MER4E LTR ERV1 -612 167 2 1894 117 83 6 chrY 7913365 7913727 -43599857 - LTR7 LTR ERV1 0 450 1 35661 151 38 32 chrY 7913727 7921079 -43592505 - HERVH LTR ERV1 0 7713 1 2129 133 65 57 chrY 7921079 7921552 -43592032 - LTR7 LTR ERV1 0 450 1 2406 131 30 0 chrY 7922487 7922854 -43590730 - MER41A LTR ERV1 -176 378 1 1957 188 43 35 chrY 7922857 7923409 -43590175 + LTR10E LTR ERV1 1 618 -15 1138 29 0 0 chrY 7923441 7923577 -43590007 - L1PA4 LINE L1 -935 5211 5076 7775 41 5 0 chrY 7923577 7924516 -43589068 + L1PA4 LINE L1 5213 6155 0 1242 182 8 8 chrY 7924849 7925091 -43588493 - MLT1B LTR MaLR 0 390 149 1147 193 5 9 chrY 7925098 7925316 -43588268 - MLT1B LTR MaLR -16 374 158 2194 150 27 7 chrY 7925316 7925695 -43587889 - MLT1B LTR MaLR 0 467 5 208 286 200 23 chrY 7925706 7925881 -43587703 + MIR SINE MIR 57 262 0 3856 157 2 8 chrY 7925918 7926537 -43587047 + L1PB4 LINE L1 5538 6152 -4 433 102 0 0 chrY 7926777 7926836 -43586748 + MSTA LTR MaLR 1 59 -369 399 274 11 0 chrY 7926939 7927034 -43586550 + MER5A DNA MER1_type 14 109 -80 242 302 23 0 chrY 7928625 7928711 -43584873 + (CATATA)n Simple_repeat Simple_repeat 6 93 0 378 182 51 14 chrY 7928711 7929013 -43584571 + (TAGA)n Simple_repeat Simple_repeat 1 313 0 252 244 13 26 chrY 7929026 7929128 -43584456 + (CATA)n Simple_repeat Simple_repeat 1 100 0 461 245 65 38 chrY 7929206 7929390 -43584194 + MER53 DNA DNA 1 189 0 1731 159 4 11 chrY 7929448 7929719 -43583865 + AluSx SINE Alu 11 279 -33 1095 93 6 22 chrY 7929734 7930281 -43583303 + (GAAA)n Simple_repeat Simple_repeat 1 537 0 286 125 62 0 chrY 7930849 7930929 -43582655 + (TAGA)n Simple_repeat Simple_repeat 1 85 0 712 124 47 0 chrY 7931117 7931286 -43582298 + (TCTA)n Simple_repeat Simple_repeat 2 178 0 254 170 50 28 chrY 7931297 7931438 -43582146 + (TCTA)n Simple_repeat Simple_repeat 2 145 0 535 145 50 20 chrY 7931468 7931769 -43581815 + (TCTA)n Simple_repeat Simple_repeat 1 310 0 208 147 67 0 chrY 7931804 7931879 -43581705 + (TCTA)n Simple_repeat Simple_repeat 2 81 0 235 329 0 0 chrY 7931883 7931968 -43581616 + (TATATG)n Simple_repeat Simple_repeat 6 90 0 389 208 21 0 chrY 7932179 7932275 -43581309 + (CATA)n Simple_repeat Simple_repeat 1 98 0 3976 201 31 12 chrY 7932539 7933307 -43580277 - LTR39 LTR ERV1 0 783 1 1656 226 11 25 chrY 7933584 7933952 -43579632 + MLT2D LTR ERVL 7 369 -45 630 194 0 17 chrY 7933988 7934168 -43579416 + (TA)n Simple_repeat Simple_repeat 2 178 0 322 192 50 71 chrY 7934173 7934272 -43579312 - L1MC4 LINE L1 -1337 6705 6609 229 286 0 0 chrY 7934272 7934342 -43579242 + (TA)n Simple_repeat Simple_repeat 1 70 -1101 1970 136 26 163 chrY 7934342 7934421 -43579163 - Tigger2a DNA MER2_type -2274 434 346 1761 156 17 0 chrY 7934421 7934709 -43578875 + AluSx SINE Alu 5 297 -15 1970 136 26 163 chrY 7934709 7934836 -43578748 - Tigger2a DNA MER2_type -2362 346 203 1832 164 10 0 chrY 7934836 7935129 -43578455 - AluSx SINE Alu -16 296 1 1970 136 26 163 chrY 7935129 7935423 -43578161 - Tigger2a DNA MER2_type -2505 203 2 229 286 0 0 chrY 7935423 7935443 -43578141 + (TA)n Simple_repeat Simple_repeat 69 1171 0 1606 199 0 3 chrY 7935838 7936289 -43577295 - AluJo SINE Alu 0 450 1 358 83 0 0 chrY 7936780 7936828 -43576756 + Alu SINE Alu 247 294 -6 849 192 10 5 chrY 7936828 7937021 -43576563 - L1P5 LINE L1 -686 5470 5277 849 171 0 0 chrY 7938018 7938188 -43575396 + (CA)n Simple_repeat Simple_repeat 1 170 0 1935 156 0 7 chrY 7938262 7938557 -43575027 - AluSx SINE Alu -19 293 1 1485 245 32 64 chrY 7938681 7938973 -43574611 + MLT1D LTR MaLR 24 295 -210 3540 111 82 48 chrY 7938973 7939559 -43574025 - MER4B LTR ERV1 -4 606 1 1485 245 32 64 chrY 7939559 7939764 -43573820 + MLT1D LTR MaLR 295 505 0 196 294 223 38 chrY 7940157 7940341 -43573243 + L2 LINE L2 2879 3096 -217 339 96 0 0 chrY 7940458 7940510 -43573074 + (TTAGGG)n Simple_repeat Simple_repeat 2 53 0 188 274 0 39 chrY 7940718 7940769 -43572815 - MER5B DNA MER1_type -1 177 129 245 363 24 8 chrY 7941810 7941934 -43571650 + MER5B DNA MER1_type 27 152 -26 2415 122 48 20 chrY 7942005 7942359 -43571225 + THE1B LTR MaLR 1 364 0 1063 291 104 3 chrY 7942913 7943250 -43570334 - MLT1D LTR MaLR 0 505 135 658 235 20 7 chrY 7943515 7943668 -43569916 - MLT1A1 LTR MaLR 0 365 211 1753 200 19 6 chrY 7943739 7944099 -43569485 - MLT1A1 LTR MaLR 0 365 1 1568 140 75 11 chrY 7945121 7945412 -43568172 - AluJb SINE Alu 0 308 1 804 240 91 33 chrY 7945852 7946148 -43567436 + MLT1C LTR MaLR 27 348 -119 340 195 37 12 chrY 7946173 7946255 -43567329 + MLT1D LTR MaLR 278 361 -144 703 251 51 51 chrY 7946272 7946571 -43567013 + MLT1C LTR MaLR 8 309 -158 1361 136 0 9 chrY 7946571 7946784 -43566800 + L1MA2 LINE L1 6091 6301 -3 703 251 51 51 chrY 7946784 7946799 -43566785 + MLT1C LTR MaLR 308 322 -145 269 229 0 0 chrY 7946806 7946867 -43566717 + MLT1D LTR MaLR 541 601 -25 1792 160 17 0 chrY 7946893 7947180 -43566404 + AluSx SINE Alu 1 292 -20 642 220 58 119 chrY 7949136 7949514 -43564070 + MLT1D LTR MaLR 7 361 -144 308 161 0 48 chrY 7949567 7949629 -43563955 + FLAM_A SINE Alu 75 133 0 1071 220 70 39 chrY 7949639 7949925 -43563659 + AluJo SINE Alu 2 296 -6 487 311 22 28 chrY 7949954 7950134 -43563450 + MLT1D LTR MaLR 316 494 -132 368 164 15 0 chrY 7950312 7950379 -43563205 - L1PA16 LINE L1 -13 6153 6086 633 178 7 105 chrY 7950379 7950531 -43563053 + MLT1C LTR MaLR 367 503 -2 334 261 9 9 chrY 7950990 7951101 -43562483 + LTR16C LTR ERVL 371 481 -10 35 41 0 0 chrY 7951512 7951561 -43562023 + AT_rich Low_complexity Low_complexity 1 49 0 215 98 66 0 chrY 7951625 7951686 -43561898 + (TA)n Simple_repeat Simple_repeat 2 66 0 227 220 52 46 chrY 7951704 7951772 -43561812 + (TATAA)n Simple_repeat Simple_repeat 1 67 -107 1956 130 14 3 chrY 7951772 7952057 -43561527 - AluSg SINE Alu -15 295 8 227 220 52 46 chrY 7952057 7952161 -43561423 + (TATAA)n Simple_repeat Simple_repeat 67 174 0 1927 177 3 0 chrY 7952400 7952711 -43560873 + AluJb SINE Alu 1 312 0 2321 123 23 6 chrY 7952943 7953292 -43560292 + THE1A LTR MaLR 1 355 0 3929 156 35 7 chrY 7953727 7954164 -43559420 - L1PB4 LINE L1 -17 6139 5675 1729 185 0 7 chrY 7954164 7954461 -43559123 - AluSg SINE Alu -15 295 1 3929 156 35 7 chrY 7954461 7954707 -43558877 - L1PB4 LINE L1 -481 5675 5437 1966 157 7 0 chrY 7954828 7955127 -43558457 + AluSx SINE Alu 1 301 -11 4542 140 31 70 chrY 7955255 7956070 -43557514 + LTR1 LTR ERV1 3 785 0 456 250 19 9 chrY 7956130 7956231 -43557353 + MLT1D LTR MaLR 1 102 -403 376 96 0 170 chrY 7956231 7956325 -43557259 + MADE1 DNA Mariner 1 78 -2 1074 188 309 3 chrY 7956325 7956629 -43556955 + MLT1D LTR MaLR 98 494 -11 1968 157 10 0 chrY 7956835 7957141 -43556443 - AluSx SINE Alu -3 309 1 244 178 27 27 chrY 7957774 7957847 -43555737 + A-rich Low_complexity Low_complexity 5 77 0 248 133 40 13 chrY 7957878 7957953 -43555631 + (TAGA)n Simple_repeat Simple_repeat 4 80 0 3515 143 8 21 chrY 7957954 7958484 -43555100 - MER1A DNA MER1_type 0 527 5 191 152 22 0 chrY 7958566 7958612 -43554972 + (TAGA)n Simple_repeat Simple_repeat 4 50 0 2031 124 17 3 chrY 7958874 7959165 -43554419 + AluSx SINE Alu 1 295 -17 1021 189 64 161 chrY 7959187 7959467 -43554117 + L1MB5 LINE L1 5749 6055 -119 22503 42 0 1 chrY 7959467 7960355 -43553229 + L1PA4 LINE L1 2734 3621 -2534 2915 6 0 0 chrY 7960355 7960666 -43552918 + AluYa5 SINE Alu 1 311 0 22503 42 0 1 chrY 7960666 7963225 -43550359 + L1PA4 LINE L1 3621 6153 -2 1021 189 64 161 chrY 7963225 7963333 -43550251 + L1MB5 LINE L1 6055 6086 -88 3165 156 39 25 chrY 7963333 7963853 -43549731 + MER1A DNA MER1_type 1 527 0 1021 189 64 161 chrY 7963853 7963934 -43549650 + L1MB5 LINE L1 6086 6173 -1 1957 141 9 41 chrY 7964010 7964330 -43549254 + AluSg SINE Alu 1 310 0 2258 99 0 6 chrY 7965523 7965836 -43547748 - AluY SINE Alu 0 311 1 496 160 66 1 chrY 7966055 7966167 -43547417 + L1MB3 LINE L1 5660 5783 -400 288 0 0 0 chrY 7966182 7966214 -43547370 + (A)n Simple_repeat Simple_repeat 1 32 0 1594 161 62 44 chrY 7966214 7966362 -43547222 + L1MB3 LINE L1 5762 5906 -277 1873 184 0 0 chrY 7966362 7966661 -43546923 + AluJo SINE Alu 5 303 -9 1594 161 62 44 chrY 7966661 7966897 -43546687 + L1MB3 LINE L1 5906 6153 -30 31 0 0 0 chrY 7966911 7966942 -43546642 + AT_rich Low_complexity Low_complexity 1 31 0 263 161 18 0 chrY 7966946 7967002 -43546582 + (CA)n Simple_repeat Simple_repeat 2 58 0 1681 170 0 14 chrY 7967035 7967317 -43546267 + AluJb SINE Alu 5 282 -30 723 54 0 0 chrY 7967317 7967409 -43546175 + (TAGA)n Simple_repeat Simple_repeat 2 93 0 184 98 196 39 chrY 7968060 7968111 -43545473 + L2 LINE L2 1965 2023 -1291 24 0 0 0 chrY 7968411 7968435 -43545149 + AT_rich Low_complexity Low_complexity 1 24 0 2038 131 3 20 chrY 7968412 7968717 -43544867 - AluSx SINE Alu -9 303 4 457 236 115 7 chrY 7968760 7968908 -43544676 - MIR SINE MIR -7 255 92 1484 226 68 53 chrY 7969453 7969927 -43543657 - MLT1D LTR MaLR 0 505 25 1113 221 83 28 chrY 7969936 7970261 -43543323 + MLT1C LTR MaLR 110 452 -15 3092 143 41 19 chrY 7970940 7971456 -43542128 + MER1A DNA MER1_type 1 527 0 1019 197 32 9 chrY 7971707 7971925 -43541659 - L1MC1 LINE L1 0 6333 6111 1947 149 0 0 chrY 7972025 7972307 -43541277 + AluSx SINE Alu 1 282 -30 2192 96 13 19 chrY 7972503 7972816 -43540768 - AluY SINE Alu 0 311 1 187 320 52 31 chrY 7974753 7974850 -43538734 - L2 LINE L2 -5 3267 3169 547 282 41 0 chrY 7975069 7975239 -43538345 - L1MB5 LINE L1 -8 6166 5990 1445 199 62 10 chrY 7975526 7975684 -43537900 - AluJb SINE Alu -5 307 159 264 30 0 0 chrY 7975684 7975717 -43537867 + (TTTG)n Simple_repeat Simple_repeat 1 33 0 1445 199 62 10 chrY 7975717 7975850 -43537734 - AluJb SINE Alu -153 159 1 197 191 0 95 chrY 7975899 7975962 -43537622 - L2 LINE L2 0 3272 3216 226 121 0 0 chrY 7976971 7977004 -43536580 + Alu SINE Alu 137 169 -134 1643 156 71 45 chrY 7977004 7977356 -43536228 - LTR7 LTR ERV1 0 450 90 646 113 47 0 chrY 7977357 7977463 -43536121 - AluSp/q SINE Alu -1 312 202 604 141 0 0 chrY 7977464 7977556 -43536028 - LTR7 LTR ERV1 -358 92 1 1268 181 7 65 chrY 7977556 7977868 -43535716 + AluSq SINE Alu 30 313 0 342 0 0 0 chrY 7979771 7979809 -43533775 + (A)n Simple_repeat Simple_repeat 1 38 0 2089 108 3 0 chrY 7980606 7980892 -43532692 - AluSp SINE Alu -26 287 1 955 105 0 8 chrY 7981420 7981553 -43532031 - AluSp SINE Alu -181 132 1 180 0 0 0 chrY 7983530 7983550 -43530034 + (TTTA)n Simple_repeat Simple_repeat 1 20 0 2516 135 8 3 chrY 7983552 7983944 -43529640 - L1PA8A LINE L1 -18 6113 5720 522 0 0 0 chrY 7984207 7984265 -43529319 + (TA)n Simple_repeat Simple_repeat 2 59 0 364 186 47 17 chrY 7985860 7986032 -43527552 + (TCTA)n Simple_repeat Simple_repeat 2 178 0 551 110 27 27 chrY 7986156 7986302 -43527282 + (TCTA)n Simple_repeat Simple_repeat 4 149 0 370 250 12 0 chrY 7986307 7986387 -43527197 + MER20 DNA MER1_type 4 84 -135 278 353 119 15 chrY 7986607 7987129 -43526455 + L2 LINE L2 2294 2869 -445 762 161 0 8 chrY 7987169 7987293 -43526291 - AluSc SINE Alu -21 288 166 496 116 0 0 chrY 7987289 7987358 -43526226 - AluS SINE Alu -234 79 11 * 905 234 23 15 chrY 7987493 7987729 -43525855 - MER20 DNA MER1_type -17 202 1 296 133 17 0 chrY 7987731 7987791 -43525793 + (CAGA)n Simple_repeat Simple_repeat 4 64 0 488 149 57 40 chrY 7987800 7987975 -43525609 + (TAGA)n Simple_repeat Simple_repeat 3 180 0 741 125 56 17 chrY 7987999 7988472 -43525112 + (TAGA)n Simple_repeat Simple_repeat 1 491 0 373 145 52 29 chrY 7988483 7988655 -43524929 + (TAGA)n Simple_repeat Simple_repeat 3 178 0 336 289 10 0 chrY 7988696 7988793 -43524791 - MER20 DNA MER1_type -1 218 121 181 304 29 39 chrY 7989150 7989252 -43524332 + L2 LINE L2 2950 3050 -263 1210 218 23 4 chrY 7989649 7989915 -43523669 - L1MB5 LINE L1 0 6174 5904 3014 127 5 5 chrY 7989947 7990373 -43523211 - MER1A DNA MER1_type 0 529 104 212 365 32 25 chrY 7990373 7990650 -43522934 - L2 LINE L2 -1034 2280 2002 368 267 23 0 chrY 7990701 7990877 -43522707 + (TA)n Simple_repeat Simple_repeat 1 180 0 25 31 0 0 chrY 7990884 7990916 -43522668 + AT_rich Low_complexity Low_complexity 1 32 0 441 221 29 20 chrY 7990918 7991323 -43522261 + (TA)n Simple_repeat Simple_repeat 1 408 0 651 169 33 12 chrY 7991343 7991682 -43521902 + (TA)n Simple_repeat Simple_repeat 1 346 0 278 209 35 9 chrY 7991707 7991822 -43521762 + (TA)n Simple_repeat Simple_repeat 2 119 0 460 141 35 12 chrY 7991906 7992076 -43521508 + (TA)n Simple_repeat Simple_repeat 1 174 0 503 130 51 10 chrY 7992090 7992510 -43521074 + (TA)n Simple_repeat Simple_repeat 1 437 0 23 54 0 0 chrY 7992704 7992741 -43520843 + AT_rich Low_complexity Low_complexity 1 37 0 1418 118 13 22 chrY 7998074 7998303 -43515281 - L1PA16 LINE L1 0 6166 5940 1872 195 37 0 chrY 7998748 7999122 -43514462 - MLT1B LTR MaLR 0 390 3 753 206 275 5 chrY 8000810 8001028 -43512556 - MER101B LTR ERV1 -51 519 243 376 234 0 47 chrY 8001041 8001148 -43512436 - MER101B LTR ERV1 -442 128 27 2440 207 40 8 chrY 8001187 8001690 -43511894 - MER74A LTR ERVL -32 526 8 207 109 18 36 chrY 8001897 8001952 -43511632 + (TTTTC)n Simple_repeat Simple_repeat 2 55 0 * 1393 189 4 31 chrY 8001950 8002230 -43511354 - AluJo SINE Alu 0 301 29 3954 162 44 21 chrY 8002560 8003312 -43510272 - L1MA8 LINE L1 -119 6172 5404 1026 188 64 108 chrY 8003324 8003638 -43509946 + AluJo SINE Alu 3 302 0 1898 134 11 0 chrY 8004860 8005143 -43508441 + AluSx SINE Alu 1 286 -26 1362 169 90 23 chrY 8005166 8005300 -43508284 - AluJo SINE Alu -28 284 160 1140 66 9 23 chrY 8005300 8005649 -43507935 + (TTC)n Simple_repeat Simple_repeat 1 344 0 1362 169 90 23 chrY 8005649 8005779 -43507805 - AluJo SINE Alu -152 160 1 201 167 0 0 chrY 8005889 8005925 -43507659 + A-rich Low_complexity Low_complexity 1 36 0 853 234 28 23 chrY 8006197 8006415 -43507169 + MER20 DNA MER1_type 1 219 0 978 66 24 12 chrY 8006431 8006598 -43506986 + (TCTA)n Simple_repeat Simple_repeat 4 172 0 817 227 0 44 chrY 8006600 8006829 -43506755 + MER20 DNA MER1_type 1 219 0 212 239 22 54 chrY 8006845 8006937 -43506647 + (TCTA)n Simple_repeat Simple_repeat 4 92 0 555 132 0 0 chrY 8006952 8007043 -43506541 + (TCTA)n Simple_repeat Simple_repeat 4 94 0 971 203 37 32 chrY 8007045 8007262 -43506322 + MER20 DNA MER1_type 1 218 -1 465 184 0 53 chrY 8007283 8007473 -43506111 + (TCTA)n Simple_repeat Simple_repeat 1 180 0 1005 209 38 5 chrY 8007510 8007721 -43505863 + MER20 DNA MER1_type 2 219 0 22 0 0 0 chrY 8008371 8008393 -43505191 + AT_rich Low_complexity Low_complexity 1 22 0 2022 151 3 0 chrY 8008394 8008693 -43504891 + AluSx SINE Alu 1 300 -12 1190 216 50 32 chrY 8009096 8009203 -43504381 + AluJo SINE Alu 9 113 -199 343 62 16 31 chrY 8009203 8009267 -43504317 + (CAAA)n Simple_repeat Simple_repeat 4 66 0 1190 216 50 32 chrY 8009267 8009442 -43504142 + AluJo SINE Alu 113 296 -16 278 75 60 0 chrY 8012788 8012855 -43500729 + (TA)n Simple_repeat Simple_repeat 2 72 0 25 31 0 0 chrY 8012923 8012955 -43500629 + AT_rich Low_complexity Low_complexity 1 32 0 37082 48 50 2 chrY 8013490 8019344 -43494240 - L1PA2 LINE L1 0 6155 13 729 185 76 38 chrY 8020022 8020233 -43493351 - MER20 DNA MER1_type 0 219 1 212 138 92 20 chrY 8020280 8020432 -43493152 + (TAGA)n Simple_repeat Simple_repeat 4 166 0 413 188 47 0 chrY 8020444 8020593 -43492991 + (TAGA)n Simple_repeat Simple_repeat 2 157 0 330 191 40 12 chrY 8020666 8020839 -43492745 + (TAGA)n Simple_repeat Simple_repeat 3 180 0 372 22 0 0 chrY 8020847 8020892 -43492692 + (CATA)n Simple_repeat Simple_repeat 2 46 0 792 221 33 9 chrY 8020947 8021160 -43492424 - MER20 DNA MER1_type -1 218 1 546 146 0 0 chrY 8021644 8021726 -43491858 + FRAM/FAM SINE Alu 9 90 -86 470 247 57 31 chrY 8021746 8021940 -43491644 + MLT1D LTR MaLR 48 246 -259 939 226 80 32 chrY 8022027 8022403 -43491181 + MLT1C LTR MaLR 1 394 -73 18140 68 7 1 chrY 8022460 8028470 -43485114 - L1PA4 LINE L1 0 6155 1 236 212 15 30 chrY 8028470 8028536 -43485048 + MLT1C LTR MaLR 403 467 0 1618 186 7 0 chrY 8029038 8029312 -43484272 + AluJo SINE Alu 20 295 -17 926 249 80 42 chrY 8029583 8030033 -43483551 - MLT1C LTR MaLR 0 467 1 249 164 27 12 chrY 8030045 8030175 -43483409 - MLT1D LTR MaLR -146 359 200 724 174 0 15 chrY 8030192 8030324 -43483260 - AluSp/q SINE Alu -9 304 175 306 237 167 26 chrY 8030332 8030488 -43483096 - MLT1D LTR MaLR -327 178 1 403 298 87 19 chrY 8030740 8030901 -43482683 + MIR SINE MIR 88 259 -3 21 0 0 0 chrY 8032253 8032274 -43481310 + AT_rich Low_complexity Low_complexity 1 21 0 33244 78 3 95 chrY 8032274 8037187 -43476397 - L1PA5 LINE L1 -9 6145 785 7325 40 2 1 chrY 8037187 8038487 -43475097 + L1PA3 LINE L1 4855 6155 0 33244 78 3 95 chrY 8038487 8039108 -43474476 - L1PA5 LINE L1 -5369 785 1355 2348 60 3 0 chrY 8039108 8039406 -43474178 - L1PA3 LINE L1 -1 6154 5856 33244 78 3 95 chrY 8039406 8040640 -43472944 - L1PA5 LINE L1 -4798 1356 11 384 169 0 0 chrY 8042817 8042894 -43470690 + (CAT)n Simple_repeat Simple_repeat 3 79 0 24 0 0 0 chrY 8043355 8043379 -43470205 + AT_rich Low_complexity Low_complexity 1 24 0 484 290 20 27 chrY 8043983 8044156 -43469428 - MIR SINE MIR -55 153 32 425 238 26 104 chrY 8044403 8044596 -43468988 - MER5B DNA MER1_type 0 178 1 24 53 0 0 chrY 8045001 8045039 -43468545 + AT_rich Low_complexity Low_complexity 1 38 0 231 229 16 0 chrY 8045795 8045856 -43467728 + MLT1J2 LTR MaLR 64 125 -325 1948 128 13 36 chrY 8046343 8046648 -43466936 - AluSg SINE Alu -12 298 1 24 53 0 0 chrY 8047000 8047038 -43466546 + AT_rich Low_complexity Low_complexity 1 38 0 543 184 22 0 chrY 8047731 8047867 -43465717 + GA-rich Low_complexity Low_complexity 1 139 0 2128 128 7 3 chrY 8047999 8048303 -43465281 - AluSx SINE Alu -5 307 3 398 253 0 63 chrY 8048821 8048979 -43464605 - L1ME LINE L1 -474 5647 5500 275 211 0 13 chrY 8049043 8049119 -43464465 + CT-rich Low_complexity Low_complexity 2 76 0 283 265 15 0 chrY 8049167 8049235 -43464349 - MER5B DNA MER1_type -109 69 1 253 217 24 0 chrY 8049482 8049565 -43464019 + CT-rich Low_complexity Low_complexity 2 86 0 1262 145 60 0 chrY 8049655 8049903 -43463681 - L1MA5A LINE L1 -6 6291 6029 2066 89 0 0 chrY 8050097 8050377 -43463207 + L1PA5 LINE L1 5875 6154 0 21 36 0 0 chrY 8050478 8050506 -43463078 + AT_rich Low_complexity Low_complexity 1 28 0 1247 233 39 21 chrY 8050514 8050797 -43462787 + AluJo SINE Alu 1 288 -24 246 107 54 0 chrY 8050797 8050853 -43462731 + (TA)n Simple_repeat Simple_repeat 1 59 0 1033 146 50 5 chrY 8050948 8051254 -43462330 - THE1C LTR MaLR 0 375 7 2557 21 0 0 chrY 8051903 8052221 -43461363 + AluY SINE Alu 1 318 0 225 213 0 0 chrY 8052472 8052519 -43461065 - MER63 DNA MER1_type -333 728 682 1300 114 0 0 chrY 8053210 8053411 -43460173 - L1PA14 LINE L1 -358 5803 5603 2371 86 3 65 chrY 8053411 8053794 -43459790 + L1PA14 LINE L1 5800 6159 -2 1503 229 7 0 chrY 8054602 8054912 -43458672 - AluJo SINE Alu 0 312 1 624 114 13 82 chrY 8056911 8056937 -43456647 + L1PA15 LINE L1 5306 5332 -834 1814 173 7 3 chrY 8056937 8057237 -43456347 + AluSx SINE Alu 1 301 -11 624 114 13 82 chrY 8057237 8057368 -43456216 + L1PA15 LINE L1 5332 5452 -714 * 18104 69 3 1 chrY 8057365 8059903 -43453681 - L1PA4 LINE L1 -1873 4273 1730 8127 55 4 3 chrY 8059896 8061743 -43451841 + L1PA4 LINE L1 4292 6142 -13 * 3745 163 24 9 chrY 8061789 8062487 -43451097 + L1PA15 LINE L1 5442 6150 -15 195 100 0 0 chrY 8062497 8062527 -43451057 + (TAAA)n Simple_repeat Simple_repeat 2 31 0 22 0 0 0 chrY 8062764 8062786 -43450798 + AT_rich Low_complexity Low_complexity 1 22 0 316 151 0 0 chrY 8062854 8062907 -43450677 - L1MC/D LINE L1 -490 5843 5791 533 222 17 0 chrY 8062915 8063032 -43450552 + L1MC1 LINE L1 6215 6333 0 21 71 0 0 chrY 8063048 8063090 -43450494 + AT_rich Low_complexity Low_complexity 1 42 0 348 24 0 0 chrY 8063650 8063691 -43449893 + (TG)n Simple_repeat Simple_repeat 2 42 0 1869 123 58 0 chrY 8063701 8063978 -43449606 - AluSq SINE Alu -20 293 1 38659 71 2 1 chrY 8064270 8070396 -43443188 + L1PA3 LINE L1 13 6149 -6 11277 56 3 0 chrY 8070412 8072599 -43440985 + L1PA4 LINE L1 3950 6139 -16 649 192 13 32 chrY 8072979 8073135 -43440449 - LTR22B LTR ERVK 0 492 340 * 1070 135 49 0 chrY 8073120 8073305 -43440279 - LTR22B LTR ERVK -294 198 5 3239 174 31 3 chrY 8073642 8074229 -43439355 + LTR26 LTR ERV1 1 603 0 835 216 44 0 chrY 8074375 8074556 -43439028 + MER5A DNA MER1_type 1 189 0 1292 205 3 68 chrY 8074857 8075179 -43438405 + AluJo SINE Alu 1 301 -11 1147 213 4 4 chrY 8075300 8075525 -43438059 + LTR26 LTR ERV1 379 603 0 445 256 99 50 chrY 8075866 8076230 -43437354 - MER20B DNA MER1_type -110 673 292 702 187 27 7 chrY 8076230 8076380 -43437204 + L1MA4 LINE L1 5846 5998 -302 21 0 0 0 chrY 8076694 8076715 -43436869 + AT_rich Low_complexity Low_complexity 1 21 0 786 209 31 7 chrY 8076845 8077119 -43436465 - L1MA7 LINE L1 -1 6290 5893 1027 234 31 73 chrY 8077299 8077604 -43435980 - MLT1A1 LTR MaLR 0 365 78 1589 180 18 85 chrY 8077604 8077993 -43435591 - MLT1A1 LTR MaLR 0 365 3 1027 234 31 73 chrY 8077993 8078068 -43435516 - MLT1A1 LTR MaLR -287 78 1 2048 117 0 78 chrY 8078705 8078920 -43434664 + L1PB4 LINE L1 5607 5776 -380 2022 141 42 36 chrY 8078920 8079281 -43434303 - THE1B LTR MaLR 0 364 2 2048 117 0 78 chrY 8079281 8079475 -43434109 + L1PB4 LINE L1 5776 5984 -172 2607 127 24 12 chrY 8079591 8080016 -43433568 + L1PB2 LINE L1 5720 6149 -2 478 139 0 0 chrY 8080109 8080195 -43433389 - L1PB1 LINE L1 -3 6148 6063 2221 107 8 46 chrY 8080195 8080328 -43433256 + L1PB1 LINE L1 5696 5833 -318 2016 143 3 0 chrY 8080328 8080629 -43432955 + AluSc SINE Alu 1 302 -7 2221 107 8 46 chrY 8080629 8080886 -43432698 + L1PB1 LINE L1 5833 6071 -80 509 229 28 16 chrY 8080912 8081069 -43432515 + L1MB3 LINE L1 6019 6184 0 228 316 168 19 chrY 8081543 8081698 -43431886 - MIR SINE MIR -56 206 29 28615 120 30 19 chrY 8081936 8086831 -43426753 + L1PA6 LINE L1 11 4959 -1187 6492 81 10 0 chrY 8086831 8087795 -43425789 + L1PA6 LINE L1 5174 6146 -8 1436 214 42 6 chrY 8087957 8088293 -43425291 - MLT1A1 LTR MaLR -15 350 3 1760 178 20 3 chrY 8088317 8088620 -43424964 + AluSx SINE Alu 1 308 -4 2051 139 0 3 chrY 8088620 8088913 -43424671 + AluSc SINE Alu 1 293 -16 2401 253 18 8 chrY 8089561 8090167 -43423417 - MER82 DNA MER2_type 0 653 42 1521 122 5 0 chrY 8090167 8090389 -43423195 - AluSc SINE Alu -7 302 80 805 230 129 94 chrY 8090870 8090923 -43422661 - MLT1D LTR MaLR 0 505 455 2402 140 37 0 chrY 8090923 8090977 -43422607 + L1PB1 LINE L1 5731 5782 -369 318 50 0 0 chrY 8090977 8091017 -43422567 + (CA)n Simple_repeat Simple_repeat 2 41 0 2402 140 37 0 chrY 8091017 8091368 -43422216 + L1PB1 LINE L1 5782 6151 0 805 230 129 94 chrY 8091368 8091749 -43421835 - MLT1D LTR MaLR -50 455 56 1281 204 43 43 chrY 8091749 8092101 -43421483 - MLT1A2 LTR MaLR 0 374 23 1928 158 31 19 chrY 8092106 8092466 -43421118 - THE1B LTR MaLR 0 364 1 198 367 31 41 chrY 8093220 8093318 -43420266 - L2 LINE L2 0 3313 3217 1134 240 62 35 chrY 8094159 8094593 -43418991 + MLT1C LTR MaLR 22 467 0 6373 88 6 0 chrY 8095291 8096362 -43417222 - L1PA7 LINE L1 -16 6138 5063 1589 185 104 32 chrY 8096949 8097465 -43416119 + MLT2A2 LTR ERVL 1 554 0 250 317 161 19 chrY 8097822 8098027 -43415557 - L2 LINE L2 0 3313 3080 1834 132 68 11 chrY 8098375 8098656 -43414928 - AluSx SINE Alu -13 299 3 618 229 6 34 chrY 8098794 8098871 -43414713 - L1MB7 LINE L1 -300 5884 5806 2201 126 73 59 chrY 8098871 8099106 -43414478 + MSTA LTR MaLR 1 246 -182 2211 94 3 0 chrY 8099106 8099403 -43414181 + AluY SINE Alu 1 298 -13 2201 126 73 59 chrY 8099403 8099589 -43413995 + MSTA LTR MaLR 246 428 0 618 229 6 34 chrY 8099589 8099690 -43413894 - L1MB7 LINE L1 -378 5806 5711 401 185 120 0 chrY 8099701 8099809 -43413775 + L1MB4 LINE L1 6035 6155 -25 2189 93 19 26 chrY 8099867 8100179 -43413405 + AluY SINE Alu 1 310 -1 1743 187 3 10 chrY 8100219 8100524 -43413060 + AluSx SINE Alu 1 303 -9 290 260 7 0 chrY 8100653 8100807 -43412777 + CT-rich Low_complexity Low_complexity 2 156 0 444 243 0 0 chrY 8100859 8101007 -43412577 + CT-rich Low_complexity Low_complexity 2 149 0 21 36 0 0 chrY 8101298 8101326 -43412258 + AT_rich Low_complexity Low_complexity 1 28 0 266 264 12 12 chrY 8102205 8102368 -43411216 + (CATATA)n Simple_repeat Simple_repeat 2 164 0 502 268 12 27 chrY 8102369 8102715 -43410869 + (TA)n Simple_repeat Simple_repeat 1 340 0 330 220 0 80 chrY 8102731 8102831 -43410753 + L1MC4 LINE L1 6612 6703 -1339 310 216 18 36 chrY 8102875 8103042 -43410542 + (CATATA)n Simple_repeat Simple_repeat 5 168 0 333 282 17 17 chrY 8103043 8103160 -43410424 + (CA)n Simple_repeat Simple_repeat 2 118 0 544 259 93 5 chrY 8104710 8104903 -43408681 - MER20 DNA MER1_type -9 210 1 540 0 0 0 chrY 8104914 8104974 -43408610 + (TAGA)n Simple_repeat Simple_repeat 1 60 0 1865 166 33 28 chrY 8104974 8105335 -43408249 + THE1B LTR MaLR 2 364 0 293 191 33 26 chrY 8105336 8105488 -43408096 + (TAGA)n Simple_repeat Simple_repeat 4 156 0 742 196 50 17 chrY 8105536 8105715 -43407869 - MER20 DNA MER1_type -17 202 18 1877 179 0 6 chrY 8105899 8106212 -43407372 + AluSx SINE Alu 1 311 -1 365 188 12 0 chrY 8107145 8107230 -43406354 + (CATA)n Simple_repeat Simple_repeat 4 89 0 303 276 46 0 chrY 8107173 8107260 -43406324 - L1MC4 LINE L1 -1338 6704 6614 * 2260 94 0 16 chrY 8107316 8107625 -43405959 + AluY SINE Alu 1 304 -7 7628 92 41 23 chrY 8107680 8109526 -43404058 + L1PA6 LINE L1 4299 6153 -1 1078 182 84 16 chrY 8111141 8111423 -43402161 + LTR47A LTR ERVL 2 364 -88 192 40 0 0 chrY 8111423 8111448 -43402136 + (TTTG)n Simple_repeat Simple_repeat 2 26 0 1078 182 84 16 chrY 8111448 8111541 -43402043 + LTR47A LTR ERVL 364 449 -3 298 269 14 14 chrY 8112572 8112868 -43400716 + CT-rich Low_complexity Low_complexity 1 296 0 268 241 30 8 chrY 8112883 8113016 -43400568 + CT-rich Low_complexity Low_complexity 2 137 0 464 250 14 7 chrY 8113059 8113342 -43400242 + CT-rich Low_complexity Low_complexity 1 284 0 1634 214 91 8 chrY 8113945 8114328 -43399256 - MLT1D LTR MaLR -90 415 1 291 188 42 0 chrY 8114329 8114377 -43399207 - MLT1D LTR MaLR -455 50 1 289 188 42 0 chrY 8114378 8114426 -43399158 - MLT1D LTR MaLR -455 50 1 299 133 44 0 chrY 8114430 8114475 -43399109 - MLT1D LTR MaLR -458 47 1 254 188 42 0 chrY 8114476 8114524 -43399060 - MLT1D LTR MaLR -455 50 1 225 154 39 77 chrY 8114571 8114623 -43398961 - MLT1D LTR MaLR -455 50 1 303 196 0 0 chrY 8114623 8114674 -43398910 - MLT1D LTR MaLR -454 51 1 3089 190 38 3 chrY 8114971 8115555 -43398029 - L1PB4 LINE L1 -17 6139 5536 1360 240 59 84 chrY 8116060 8116368 -43397216 + MER77 LTR ERV1 41 355 -325 2199 170 78 5 chrY 8116368 8116767 -43396817 + MSTA LTR MaLR 1 428 0 1360 240 59 84 chrY 8116767 8117056 -43396528 + MER77 LTR ERV1 355 673 -7 1726 172 0 38 chrY 8117191 8117505 -43396079 + AluJo SINE Alu 11 312 0 667 181 17 14 chrY 8117505 8117859 -43395725 + GA-rich Low_complexity Low_complexity 1 355 0 1091 68 17 23 chrY 8117872 8118048 -43395536 + (GAAA)n Simple_repeat Simple_repeat 4 178 0 1601 207 11 28 chrY 8118416 8118779 -43394805 + L1MB8 LINE L1 5782 6138 -40 1451 198 38 0 chrY 8118779 8119042 -43394542 + AluJo SINE Alu 1 273 -39 1775 53 0 0 chrY 8119042 8119250 -43394334 + L1PA4 LINE L1 5947 6154 -1 26 0 0 0 chrY 8119250 8119276 -43394308 + AT_rich Low_complexity Low_complexity 1 26 0 317 123 0 35 chrY 8119280 8119337 -43394247 + L1MB8 LINE L1 6124 6178 0 207 382 42 14 chrY 8120073 8120217 -43393367 - MIR3 SINE MIR -36 172 25 721 238 12 0 chrY 8120316 8120480 -43393104 - L1PB4 LINE L1 -5 6151 5986 1590 168 49 0 chrY 8120607 8120893 -43392691 - MLT1A1 LTR MaLR -2 363 64 1722 190 20 72 chrY 8120940 8121345 -43392239 - MLT1B LTR MaLR -4 386 3 638 181 87 0 chrY 8121657 8121795 -43391789 + MLT2D LTR ERVL 144 293 -121 1778 250 86 26 chrY 8121853 8122434 -43391150 + MLT1E3 LTR MaLR 1 616 -8 4003 102 56 0 chrY 8122444 8123002 -43390582 + L1PA10 LINE L1 5576 6164 -4 733 230 0 0 chrY 8123295 8123421 -43390163 - FLAM_C SINE Alu -7 126 1 201 121 0 0 chrY 8123498 8123531 -43390053 + (TTA)n Simple_repeat Simple_repeat 2 34 0 2100 128 0 10 chrY 8123602 8123906 -43389678 + AluY SINE Alu 1 301 -10 207 0 0 0 chrY 8123908 8123931 -43389653 + (GGAGAA)n Simple_repeat Simple_repeat 3 25 0 1629 175 0 36 chrY 8124075 8124384 -43389200 + AluJo SINE Alu 1 298 -14 944 202 77 37 chrY 8124725 8125013 -43388571 - MSTD LTR MaLR -1 395 49 1906 161 7 0 chrY 8125013 8125311 -43388273 - AluSx SINE Alu -12 300 1 944 202 77 37 chrY 8125311 8125362 -43388222 - MSTD LTR MaLR -347 49 1 974 239 12 36 chrY 8125546 8125797 -43387787 + AluJo SINE Alu 14 258 -54 1188 274 17 59 chrY 8126668 8126779 -43386805 + MER44D DNA MER2_type 1 115 -2472 239 0 32 0 chrY 8126779 8126810 -43386774 + (TTTA)n Simple_repeat Simple_repeat 3 34 0 1979 154 0 0 chrY 8126812 8127092 -43386492 - AluSx SINE Alu -32 280 1 1188 274 17 59 chrY 8127092 8127335 -43386249 + MER44D DNA MER2_type 116 343 -362 1565 177 41 38 chrY 8127619 8127963 -43385621 + Tigger7 DNA MER2_type 2139 2483 -4 2191 121 0 0 chrY 8128116 8128414 -43385170 + AluY SINE Alu 1 298 -13 1757 174 10 3 chrY 8128437 8128735 -43384849 - AluSx SINE Alu -12 300 1 1014 139 35 60 chrY 8129262 8129463 -43384121 + MLT2A2 LTR ERVL 258 453 0 3263 119 80 25 chrY 8130387 8130948 -43382636 + MER4B LTR ERV1 10 601 -9 3947 155 19 13 chrY 8131507 8131630 -43381954 - MER41B LTR ERV1 0 635 514 1848 152 41 0 chrY 8131630 8131920 -43381664 + AluSx SINE Alu 1 302 -10 3947 155 19 13 chrY 8131920 8132427 -43381157 - MER41B LTR ERV1 -121 514 1 366 284 0 0 chrY 8132482 8132563 -43381021 + Tigger4(Zombi) DNA MER2_type 1 81 -2650 1592 205 0 13 chrY 8132621 8132923 -43380661 - AluJo SINE Alu -14 298 1 431 97 0 14 chrY 8132924 8132996 -43380588 + Tigger4(Zombi) DNA MER2_type 2480 2550 -181 1416 206 25 4 chrY 8132996 8133277 -43380307 + AluJo SINE Alu 1 287 -25 894 189 11 6 chrY 8133322 8133502 -43380082 + Tigger4(Zombi) DNA MER2_type 2545 2725 -6 1574 182 0 44 chrY 8133908 8134227 -43379357 + AluJb SINE Alu 1 306 0 186 103 0 0 chrY 8134402 8134431 -43379153 + (TAA)n Simple_repeat Simple_repeat 2 30 0 2278 135 82 15 chrY 8134760 8135101 -43378483 - THE1B LTR MaLR 0 364 1 2773 42 0 0 chrY 8136011 8136324 -43377260 + L1PA3 LINE L1 5840 6152 -3 481 149 22 39 chrY 8136463 8136700 -43376884 + CT-rich Low_complexity Low_complexity 1 233 0 500 213 17 33 chrY 8136754 8137554 -43376030 + CT-rich Low_complexity Low_complexity 1 786 0 212 200 18 0 chrY 8137547 8137602 -43375982 + C-rich Low_complexity Low_complexity 3 58 0 * 226 223 32 11 chrY 8137602 8137696 -43375888 + T-rich Low_complexity Low_complexity 4 99 0 363 177 9 35 chrY 8137710 8137823 -43375761 + CT-rich Low_complexity Low_complexity 4 113 0 331 258 13 7 chrY 8137844 8137999 -43375585 + CT-rich Low_complexity Low_complexity 1 156 0 1250 234 42 60 chrY 8138356 8138740 -43374844 + MLT1B LTR MaLR 1 377 -13 1156 209 7 9 chrY 8138736 8138970 -43374614 + MLT1B LTR MaLR 159 396 0 * 1130 154 9 69 chrY 8138971 8139204 -43374380 + MLT1B LTR MaLR 159 377 -13 455 102 8 211 chrY 8139846 8139919 -43373665 - Tigger5 DNA MER2_type 0 2323 2285 1557 204 13 3 chrY 8139919 8140227 -43373357 + AluJo SINE Alu 1 311 -1 455 102 8 211 chrY 8140227 8140281 -43373303 - Tigger5 DNA MER2_type -38 2285 2222 264 313 56 25 chrY 8140280 8140440 -43373144 - LTR16C LTR ERVL -29 462 298 * 1178 215 71 62 chrY 8140686 8141071 -43372513 + MLT1B LTR MaLR 4 396 0 369 351 5 39 chrY 8141163 8141368 -43372216 - LTR16C LTR ERVL -233 258 61 454 225 153 80 chrY 8141417 8141782 -43371802 + L1ME3A LINE L1 4883 5274 -872 586 281 47 71 chrY 8141870 8142052 -43371532 + L1ME3A LINE L1 5385 5570 -596 1920 126 10 40 chrY 8142052 8142354 -43371230 - AluSx SINE Alu -19 293 1 586 281 47 71 chrY 8142354 8142708 -43370876 + L1ME3A LINE L1 5570 5919 -247 844 101 0 17 chrY 8142739 8142880 -43370704 - L1PA10 LINE L1 0 6168 6035 1893 169 54 17 chrY 8142880 8143234 -43370350 - L1PB4 LINE L1 -8 6148 5782 182 171 24 0 chrY 8143234 8143275 -43370309 + (TATATG)n Simple_repeat Simple_repeat 5 46 0 264 283 33 0 chrY 8143276 8143368 -43370216 + L1MC4 LINE L1 6614 6708 -1334 * 1092 154 53 8 chrY 8143345 8143550 -43370034 - L1M4 LINE L1 -364 5792 5579 1648 179 7 40 chrY 8143899 8144059 -43369525 + AluJo SINE Alu 2 149 -163 2758 122 47 0 chrY 8144059 8144468 -43369116 - MSTA LTR MaLR 0 428 1 1648 179 7 40 chrY 8144468 8144608 -43368976 + AluJo SINE Alu 149 292 -20 1479 207 29 4 chrY 8145315 8145595 -43367989 + AluJo SINE Alu 1 287 -25 225 305 0 0 chrY 8146090 8146149 -43367435 - LTR16A LTR ERVL -7 443 385 260 193 61 26 chrY 8146418 8146532 -43367052 + (TAGA)n Simple_repeat Simple_repeat 4 121 0 618 14 0 0 chrY 8146537 8146608 -43366976 + (ATATG)n Simple_repeat Simple_repeat 5 75 0 382 49 33 0 chrY 8146608 8146669 -43366915 + (TGGA)n Simple_repeat Simple_repeat 2 64 0 533 105 35 35 chrY 8146688 8146859 -43366725 + (TAGA)n Simple_repeat Simple_repeat 4 174 0 427 119 36 42 chrY 8146884 8147052 -43366532 + (TAGA)n Simple_repeat Simple_repeat 4 170 0 209 111 44 0 chrY 8147087 8147132 -43366452 + (TAGA)n Simple_repeat Simple_repeat 3 49 0 279 0 0 0 chrY 8147891 8147922 -43365662 + (TG)n Simple_repeat Simple_repeat 2 32 0 1111 188 34 21 chrY 8148032 8148266 -43365318 - AluJo SINE Alu -29 283 47 1450 211 50 0 chrY 8148321 8148620 -43364964 - MER2 DNA MER2_type -31 314 1 1453 181 3 64 chrY 8149072 8149386 -43364198 + AluJo SINE Alu 12 306 -6 567 135 0 0 chrY 8149386 8149482 -43364102 + (GGAA)n Simple_repeat Simple_repeat 1 96 0 1446 193 65 0 chrY 8150664 8150939 -43362645 + AluJb SINE Alu 1 293 -19 7088 55 1 0 chrY 8150974 8151804 -43361780 + L1PA4 LINE L1 5323 6153 -2 26 0 0 0 chrY 8151804 8151830 -43361754 + AT_rich Low_complexity Low_complexity 1 26 0 214 114 0 0 chrY 8153035 8153070 -43360514 - L2 LINE L2 -3 3269 3235 2191 179 25 6 chrY 8153301 8153658 -43359926 - THE1B LTR MaLR 0 364 1 618 241 97 0 chrY 8153688 8153833 -43359751 + AluSg/x SINE Alu 138 296 -16 2738 115 13 68 chrY 8154058 8154598 -43358986 + L1PA6 LINE L1 3840 4349 -1797 6620 74 12 2 chrY 8154598 8156114 -43357470 + L1PA6 LINE L1 4636 6154 0 464 236 9 0 chrY 8156281 8156387 -43357197 - Tigger2 DNA MER2_type -11 2707 2601 375 204 48 12 chrY 8156471 8156638 -43356946 + (TA)n Simple_repeat Simple_repeat 2 174 0 41 66 0 0 chrY 8156643 8156719 -43356865 + AT_rich Low_complexity Low_complexity 1 76 0 1465 164 70 32 chrY 8156804 8157117 -43356467 - Tigger2 DNA MER2_type -109 2609 1 2575 50 0 0 chrY 8157145 8157444 -43356140 + AluY SINE Alu 1 299 -12 254 261 46 0 chrY 8157532 8157662 -43355922 + (TA)n Simple_repeat Simple_repeat 1 136 0 1861 156 0 0 chrY 8157800 8158075 -43355509 - AluSx SINE Alu -19 293 19 536 253 39 39 chrY 8158099 8158277 -43355307 - MER20 DNA MER1_type -33 186 9 579 163 0 113 chrY 8158568 8158582 -43355002 + LTR62 LTR ERVK 1 15 -704 2076 173 14 6 chrY 8158582 8158941 -43354643 - THE1B LTR MaLR -2 362 1 579 163 0 113 chrY 8158941 8159086 -43354498 + LTR62 LTR ERVK 15 142 -577 230 186 0 0 chrY 8159086 8159129 -43354455 + LTR30 LTR ERV1 1 43 -679 704 213 25 31 chrY 8159129 8159403 -43354181 + LTR12 LTR ERV1 62 234 -480 2463 58 0 0 chrY 8159442 8159752 -43353832 + L1PA3 LINE L1 5843 6152 -3 288 279 0 0 chrY 8159777 8159845 -43353739 + MER106B DNA MER1_type 1 68 -991 39635 52 2 2 chrY 8159859 8165855 -43347729 + L1PA3 LINE L1 127 6127 -28 216 67 0 0 chrY 8165860 8165890 -43347694 + (TAAAA)n Simple_repeat Simple_repeat 1 30 0 865 220 0 0 chrY 8165918 8166091 -43347493 + L1PA15 LINE L1 5993 6165 0 982 139 6 12 chrY 8166564 8166737 -43346847 - L1PA13 LINE L1 0 6163 5992 1731 80 0 0 chrY 8167473 8167743 -43345841 + L1PA7 LINE L1 5912 6181 0 1954 166 3 0 chrY 8167821 8168122 -43345462 - AluSx SINE Alu -10 302 1 237 33 0 0 chrY 8169037 8169067 -43344517 + (TG)n Simple_repeat Simple_repeat 2 31 0 207 139 0 0 chrY 8169396 8169432 -43344152 + (TC)n Simple_repeat Simple_repeat 1 36 0 180 273 26 78 chrY 8169463 8169540 -43344044 - L3 LINE CR1 0 1577 1505 691 282 98 25 chrY 8169599 8169996 -43343588 - MER77 LTR ERV1 -7 598 173 379 250 92 0 chrY 8170044 8170164 -43343420 - MER77 LTR ERV1 -406 199 69 236 257 29 0 chrY 8170354 8170424 -43343160 + MER96B DNA MER1_type? 345 416 -1 311 111 0 19 chrY 8170456 8170510 -43343074 + (TA)n Simple_repeat Simple_repeat 2 54 0 208 184 54 0 chrY 8170557 8170704 -43342880 + (TA)n Simple_repeat Simple_repeat 1 155 0 209 33 33 0 chrY 8170785 8170815 -43342769 + (TA)n Simple_repeat Simple_repeat 1 31 0 267 247 12 12 chrY 8170839 8170920 -43342664 - Tigger5 DNA MER2_type 0 2323 2243 792 173 0 23 chrY 8171017 8171150 -43342434 + FLAM_C SINE Alu 1 130 -3 1432 228 10 3 chrY 8171164 8171458 -43342126 + AluJo SINE Alu 1 296 -16 255 152 0 0 chrY 8171493 8171539 -43342045 + (CATA)n Simple_repeat Simple_repeat 3 48 0 1777 166 85 39 chrY 8171576 8172011 -43341573 - LTR2B LTR ERV1 0 490 36 9269 86 5 1 chrY 8172034 8173347 -43340237 - Harlequin LTR ERV1 0 6896 5578 1098 96 0 0 chrY 8173349 8173485 -43340099 + AluY SINE Alu 1 136 -175 10556 76 16 3 chrY 8173489 8174928 -43338656 - Harlequin LTR ERV1 -1943 4953 3496 20035 91 57 39 chrY 8174928 8178246 -43335338 - Harlequin LTR ERV1 -3517 3379 1 1295 234 75 35 chrY 8178250 8178674 -43334910 - LTR2B LTR ERV1 -16 474 34 421 290 6 19 chrY 8178749 8178868 -43334716 - MER96B DNA MER1_type? -5 412 294 1979 155 7 0 chrY 8178868 8179165 -43334419 + AluSx SINE Alu 1 299 -13 421 290 6 19 chrY 8179165 8179207 -43334377 - MER96B DNA MER1_type? -123 294 253 1985 142 36 0 chrY 8179474 8179776 -43333808 - AluSp SINE Alu 0 313 1 1571 214 72 2 chrY 8179882 8180297 -43333287 + L1MC3 LINE L1 7325 7768 -17 1391 197 7 36 chrY 8180304 8180608 -43332976 + AluJb SINE Alu 2 296 -16 576 207 95 18 chrY 8181071 8181240 -43332344 - MER34C LTR ERV1 -3 582 401 * 2100 155 61 26 chrY 8181232 8181659 -43331925 - MER4B LTR ERV1 -160 450 9 341 239 26 52 chrY 8181867 8182018 -43331566 - L1MB7 LINE L1 -10 6174 6025 1435 142 77 0 chrY 8182066 8182326 -43331258 + MER4E LTR ERV1 1 280 -499 4287 124 18 137 chrY 8182327 8183802 -43329782 - pTR5 LTR ERV1 0 2606 1524 2753 147 26 30 chrY 8183802 8184307 -43329277 + MER4E LTR ERV1 277 779 0 507 229 39 56 chrY 8184332 8184511 -43329073 + LTR8A LTR ERV1 298 473 -254 543 213 67 0 chrY 8184527 8184691 -43328893 - L1MB7 LINE L1 -190 5988 5814 1430 175 38 16 chrY 8184708 8185023 -43328561 - L1MC1 LINE L1 0 6333 6012 3410 113 49 6 chrY 8185023 8185554 -43328030 + MER41A LTR ERV1 1 554 0 1948 156 39 28 chrY 8186558 8186918 -43326666 - THE1B LTR MaLR 0 364 1 419 222 26 0 chrY 8187184 8187337 -43326247 + (TA)n Simple_repeat Simple_repeat 2 158 0 652 226 5 38 chrY 8187349 8187364 -43326220 - MLT1C LTR MaLR -112 355 341 1790 158 32 45 chrY 8187364 8187744 -43325840 - THE1C LTR MaLR 0 375 1 652 226 5 38 chrY 8187744 8187914 -43325670 - MLT1C LTR MaLR -126 341 176 855 119 0 0 chrY 8187934 8188052 -43325532 - AluSq/x SINE Alu -194 118 1 636 173 73 45 chrY 8188052 8188231 -43325353 - MLT1C LTR MaLR -281 186 3 1943 137 37 7 chrY 8188603 8188903 -43324681 - AluSx SINE Alu -3 309 1 1543 199 3 34 chrY 8189008 8189330 -43324254 - AluJb SINE Alu 0 312 1 1773 192 0 0 chrY 8189647 8189944 -43323640 + AluJo SINE Alu 1 297 -15 1846 175 3 0 chrY 8190243 8190534 -43323050 + AluSx SINE Alu 1 292 -20 1029 213 136 37 chrY 8190955 8191228 -43322356 - AluJb SINE Alu -1 311 12 16648 56 3 3 chrY 8193191 8196112 -43317472 - L1PA5 LINE L1 -6 6148 3228 6636 74 34 0 chrY 8196115 8197075 -43316509 + L1PA5 LINE L1 2224 3216 -2930 240 35 0 0 chrY 8197583 8197612 -43315972 + (TC)n Simple_repeat Simple_repeat 2 30 0 2195 106 3 7 chrY 8197682 8197984 -43315600 + AluSg SINE Alu 1 301 -9 854 44 0 0 chrY 8198120 8198233 -43315351 - L1PA3 LINE L1 -186 5969 5857 1530 43 0 0 chrY 8198233 8198417 -43315167 + L1PA3 LINE L1 5968 6153 -2 237 182 18 0 chrY 8198440 8198495 -43315089 + A-rich Low_complexity Low_complexity 4 59 0 241 345 82 9 chrY 8198689 8198799 -43314785 - MIR3 SINE MIR -8 200 83 1615 194 0 35 chrY 8198909 8199219 -43314365 + AluJo SINE Alu 1 299 -13 1741 207 0 0 chrY 8199329 8199629 -43313955 - AluSx SINE Alu -12 300 1 205 267 0 0 chrY 8199712 8199757 -43313827 + (TG)n Simple_repeat Simple_repeat 1 45 0 28 29 0 0 chrY 8200321 8200356 -43313228 + AT_rich Low_complexity Low_complexity 1 35 0 1363 206 0 34 chrY 8200368 8200635 -43312949 - AluJo SINE Alu -54 258 1 657 227 8 0 chrY 8200781 8200913 -43312671 + FLAM_C SINE Alu 1 133 0 1438 170 42 8 chrY 8200937 8201196 -43312388 + AluJb SINE Alu 23 290 -22 305 146 37 12 chrY 8201196 8201278 -43312306 + (TA)n Simple_repeat Simple_repeat 1 84 0 2110 134 0 0 chrY 8201368 8201659 -43311925 - AluSx SINE Alu -16 296 6 1870 161 3 3 chrY 8201806 8202086 -43311498 + AluSx SINE Alu 3 283 -25 180 0 0 0 chrY 8202086 8202106 -43311478 + (CA)n Simple_repeat Simple_repeat 1 20 0 2123 109 7 3 chrY 8202114 8202408 -43311176 + AluSx SINE Alu 7 301 -11 4372 128 44 0 chrY 8202586 8203248 -43310336 - LTR8 LTR ERV1 0 691 1 2049 167 92 0 chrY 8203763 8204153 -43309431 + MSTA LTR MaLR 1 426 -2 2275 104 0 7 chrY 8204205 8204513 -43309071 - AluY SINE Alu -3 308 3 2024 154 3 0 chrY 8204572 8204878 -43308706 + AluSx SINE Alu 1 307 -5 415 174 10 31 chrY 8204961 8205059 -43308525 + L1MC2 LINE L1 6073 6168 -176 1280 177 2 40 chrY 8205059 8205568 -43308016 + MER4A LTR ERV1 1 558 -106 41379 70 3 4 chrY 8205701 8211850 -43301734 + L1PA4 LINE L1 2 6142 -13 257 274 42 0 chrY 8211854 8211949 -43301635 + LTR30 LTR ERV1 516 614 -108 804 165 24 0 chrY 8211951 8212078 -43301506 + LTR12 LTR ERV1 351 480 -234 438 103 0 0 chrY 8212081 8212139 -43301445 + Alu SINE Alu 238 295 -15 2793 139 14 91 chrY 8212139 8212230 -43301354 + MER4B LTR ERV1 19 115 -664 2009 156 0 3 chrY 8212230 8212537 -43301047 + AluSq SINE Alu 1 306 -7 2793 139 14 91 chrY 8212537 8213007 -43300577 + MER4B LTR ERV1 115 689 -90 3604 156 34 11 chrY 8213007 8213628 -43299956 + MER41B LTR ERV1 1 635 0 2793 139 14 91 chrY 8213628 8213713 -43299871 + MER4B LTR ERV1 689 779 0 396 145 26 0 chrY 8213714 8213790 -43299794 + L1MC2 LINE L1 6255 6332 -12 257 160 0 40 chrY 8214255 8214305 -43299279 + LTR30 LTR ERV1 1 48 -674 1301 165 157 30 chrY 8214305 8214764 -43298820 + pTR5 LTR ERV1 57 480 -234 1662 209 62 81 chrY 8215493 8216009 -43297575 + LTR64 LTR ERVK 43 548 -10 1733 147 4 0 chrY 8216063 8216328 -43297256 - AluY SINE Alu -45 266 1 745 201 0 8 chrY 8216329 8216463 -43297121 - AluJb SINE Alu -178 134 2 193 109 43 0 chrY 8216480 8216526 -43297058 + (TAGA)n Simple_repeat Simple_repeat 1 48 0 2294 198 27 5 chrY 8216762 8217211 -43296373 + MLT2C2 LTR ERVL 1 459 -5 1910 95 89 131 chrY 8217615 8218026 -43295558 - LTR14B LTR ERVK -5 603 1 2855 105 66 0 chrY 8218223 8218632 -43294952 - MLT2A1 LTR ERVL -8 436 1 1821 125 88 4 chrY 8219579 8219851 -43293733 - AluSc SINE Alu -14 295 1 1295 229 35 7 chrY 8220357 8220645 -43292939 - AluJb SINE Alu -16 296 1 443 282 14 57 chrY 8221391 8221600 -43291984 + LTR4 LTR ERV1 1 200 -396 554 268 65 51 chrY 8221786 8222062 -43291522 + LTR4 LTR ERV1 317 596 0 581 256 17 28 chrY 8223292 8223472 -43290112 - MER39 LTR ERV1 0 707 530 743 224 0 0 chrY 8223475 8223622 -43289962 - AluJb SINE Alu -31 281 135 309 151 0 0 chrY 8223622 8223675 -43289909 + (TA)n Simple_repeat Simple_repeat 2 54 0 337 204 23 0 chrY 8223675 8223763 -43289821 + L1MC4 LINE L1 6614 6703 -1339 700 194 0 8 chrY 8223790 8223919 -43289665 - AluSq/x SINE Alu -184 129 2 541 198 27 94 chrY 8223947 8224189 -43289395 - MER39 LTR ERV1 -206 501 150 232 239 0 0 chrY 8224402 8224448 -43289136 - MER39 LTR ERV1 -661 46 1 661 215 0 0 chrY 8224806 8224936 -43288648 - FRAM SINE Alu -2 174 45 1069 207 10 5 chrY 8225160 8225358 -43288226 + MER58A DNA MER1_type 26 224 0 1675 227 57 4 chrY 8225618 8226054 -43287530 + MER89 LTR ERV1 1 559 0 1637 204 43 6 chrY 8226856 8227208 -43286376 - MLT1A1 LTR MaLR 0 365 1 23 0 0 0 chrY 8227558 8227581 -43286003 + AT_rich Low_complexity Low_complexity 1 23 0 1756 182 49 0 chrY 8228103 8228411 -43285173 + MST-int LTR MaLR 1249 1571 -80 1958 124 0 40 chrY 8228419 8228746 -43284838 + AluY SINE Alu 6 311 0 2398 187 15 41 chrY 8228747 8229062 -43284522 - L1MB5 LINE L1 -37 6137 5840 2199 112 3 7 chrY 8229062 8229365 -43284219 - AluSc SINE Alu -1 308 7 2398 187 15 41 chrY 8229365 8229588 -43283996 - L1MB5 LINE L1 -334 5840 5613 1700 210 0 0 chrY 8229616 8229907 -43283677 + AluJo SINE Alu 3 293 -19 585 238 123 87 chrY 8230554 8231045 -43282539 - MER34C LTR ERV1 -64 501 5 235 176 39 20 chrY 8231298 8231349 -43282235 + MLT1C LTR MaLR 130 181 -209 776 179 0 7 chrY 8231349 8231489 -43282095 + AluJb SINE Alu 3 141 -171 1116 254 17 17 chrY 8231517 8231816 -43281768 + MLT1C LTR MaLR 169 467 0 3270 140 22 15 chrY 8232104 8232647 -43280937 - L1PB4 LINE L1 0 6156 5610 216 327 109 27 chrY 8233234 8233491 -43280093 - L2 LINE L2 -167 3105 2828 289 315 216 4 chrY 8233812 8234066 -43279518 + L2 LINE L2 2963 3270 -2 235 228 0 35 chrY 8234362 8234419 -43279165 + (TATATG)n Simple_repeat Simple_repeat 5 59 0 680 218 63 17 chrY 8235342 8235516 -43278068 - AluJb SINE Alu -15 297 116 809 234 152 4 chrY 8235616 8235885 -43277699 - MLT1E2 LTR MaLR -207 419 111 3651 30 0 0 chrY 8237056 8237487 -43276097 - L1P LINE L1 -1014 5132 4702 * 5981 31 0 4 chrY 8237484 8238190 -43275394 + L1P LINE L1 4003 4705 -1441 2386 94 0 0 chrY 8239788 8240097 -43273487 + AluY SINE Alu 3 311 0 234 0 0 0 chrY 8242100 8242126 -43271458 + (TG)n Simple_repeat Simple_repeat 2 27 0 306 313 8 31 chrY 8243116 8243244 -43270340 + L2 LINE L2 2715 2839 -475 264 200 0 0 chrY 11245423 11245473 -40268111 + AluJ/FRAM SINE Alu 233 282 -20 441 0 0 0 chrY 11245485 11245534 -40268050 + (TAA)n Simple_repeat Simple_repeat 2 50 0 198 0 0 0 chrY 11245533 11245555 -40268029 + (GA)n Simple_repeat Simple_repeat 2 23 0 * 980 252 65 9 chrY 11245664 11246367 -40267217 - L1M4 LINE L1 -3542 2840 2098 484 249 81 1 chrY 11246484 11246705 -40266879 - L1M4 LINE L1 -4456 1926 1612 434 295 57 34 chrY 11246731 11247096 -40266488 - L1M4 LINE L1 -4517 1786 1128 247 81 0 27 chrY 11247108 11247145 -40266439 + (TTCC)n Simple_repeat Simple_repeat 3 38 0 353 147 0 15 chrY 11247146 11247214 -40266370 + (TCCCC)n Simple_repeat Simple_repeat 5 71 0 851 228 103 23 chrY 11247218 11247481 -40266103 - AluJo SINE Alu -3 309 26 332 276 24 24 chrY 11247483 11247610 -40265974 - L1M4 LINE L1 -5265 1119 993 663 266 15 0 chrY 11247621 11247824 -40265760 + L1MB2 LINE L1 3734 3939 -2207 1281 221 4 30 chrY 11247828 11248090 -40265494 + AluJo SINE Alu 1 255 -57 204 40 0 0 chrY 11248119 11248144 -40265440 + (TAAA)n Simple_repeat Simple_repeat 1 25 0 2158 254 87 44 chrY 11248171 11248471 -40265113 + L1MB2 LINE L1 3967 4253 -1893 387 0 0 0 chrY 11248471 11248514 -40265070 + (CA)n Simple_repeat Simple_repeat 2 44 0 2158 254 87 44 chrY 11248514 11249401 -40264183 + L1MB2 LINE L1 4253 5205 -941 243 0 0 0 chrY 11249401 11249428 -40264156 + (A)n Simple_repeat Simple_repeat 1 27 0 1734 208 89 109 chrY 11249433 11249982 -40263602 + L1MB2 LINE L1 5299 5857 -314 1475 113 5 0 chrY 11249982 11250177 -40263407 + AluSc SINE Alu 1 196 -113 337 115 16 0 chrY 11250178 11250239 -40263345 + AluSc SINE Alu 238 299 0 1734 208 89 109 chrY 11250239 11250478 -40263106 + L1MB2 LINE L1 5856 6132 -39 1952 160 7 0 chrY 11250499 11250805 -40262779 + AluSx SINE Alu 5 312 0 651 244 76 23 chrY 11250836 11251139 -40262445 + Charlie2 DNA MER1_type 2004 2322 -540 638 329 71 53 chrY 11251274 11251912 -40261672 - L2 LINE L2 -255 3058 2415 1339 188 22 43 chrY 11251974 11252251 -40261333 - AluJo SINE Alu -21 291 21 749 226 84 8 chrY 11252327 11252694 -40260890 + Charlie2 DNA MER1_type 2393 2787 -75 430 320 74 7 chrY 11252740 11253024 -40260560 - L1ME LINE L1 -482 5688 5386 424 258 27 86 chrY 11253162 11253245 -40260339 - L1ME LINE L1 -888 5258 5172 1646 197 17 14 chrY 11253245 11253535 -40260049 + AluJb SINE Alu 1 291 -21 424 258 27 86 chrY 11253535 11253672 -40259912 - L1ME LINE L1 -974 5172 5051 335 263 103 67 chrY 11253684 11253908 -40259676 + L1ME3A LINE L1 5793 6024 -146 314 331 83 6 chrY 11254005 11254174 -40259410 + MIR SINE MIR 9 190 -72 807 269 47 25 chrY 11254316 11254595 -40258989 - MLT1E LTR MaLR -1 592 308 250 267 13 13 chrY 11254605 11254680 -40258904 - MLT1F LTR MaLR -467 75 1 2099 128 3 0 chrY 11254832 11255129 -40258455 + AluSg1 SINE Alu 1 298 -11 236 190 0 89 chrY 11256269 11256348 -40257236 + CT-rich Low_complexity Low_complexity 4 75 0 2736 93 30 5 chrY 11256968 11257396 -40256188 - LTR7 LTR ERV1 -11 439 1 500 228 80 25 chrY 11257526 11257619 -40255965 + MER45A DNA AcHobo 1 108 -1473 1865 163 30 3 chrY 11257619 11257920 -40255664 - AluSx SINE Alu -3 309 1 500 228 80 25 chrY 11257920 11257988 -40255596 + MER45A DNA AcHobo 108 171 -7 336 323 74 9 chrY 11258230 11258447 -40255137 - LTR50 LTR ERVL -112 683 453 863 273 92 44 chrY 11258799 11259254 -40254330 + L1M4 LINE L1 8 484 -6058 877 267 31 16 chrY 11259272 11259737 -40253847 - MER74A LTR ERVL 0 622 89 373 314 80 29 chrY 11259782 11260021 -40253563 + L1M4 LINE L1 523 773 -5769 951 167 103 138 chrY 11260040 11260203 -40253381 + AluY SINE Alu 1 149 -152 1191 112 0 0 chrY 11260203 11260382 -40253202 + (GAA)n Simple_repeat Simple_repeat 1 179 0 951 167 103 138 chrY 11260382 11260529 -40253055 + AluY SINE Alu 149 300 -1 213 296 0 0 chrY 11260538 11260609 -40252975 + A-rich Low_complexity Low_complexity 1 71 0 467 257 71 11 chrY 11260633 11260816 -40252768 + L1M4 LINE L1 984 1177 -5365 264 230 40 20 chrY 11260862 11260962 -40252622 - L1MA8 LINE L1 -3 6288 6187 654 200 75 0 chrY 11260998 11261118 -40252466 - FLAM_A SINE Alu 0 133 5 599 201 20 106 chrY 11261118 11261372 -40252212 - L1M3e LINE L1 -3280 3048 2817 497 129 43 0 chrY 11261421 11261514 -40252070 + L1 LINE L1 3479 3575 -2571 902 227 33 115 chrY 11261566 11262050 -40251534 - L1M3e LINE L1 -3514 2814 2379 2198 96 0 20 chrY 11262050 11262343 -40251241 - AluSc SINE Alu -22 287 1 902 227 33 115 chrY 11262343 11262405 -40251179 - L1M3e LINE L1 -3949 2379 2313 376 156 0 0 chrY 11262410 11262474 -40251110 - AluSx SINE Alu -9 292 229 666 229 28 1 chrY 11262501 11262687 -40250897 - MER61E LTR ERV1 -6 773 340 361 174 65 11 chrY 11262865 11262957 -40250627 - LTR25 LTR ERV1 -428 366 270 1251 155 0 21 chrY 11263130 11263324 -40250260 - AluSq SINE Alu -24 289 100 294 95 0 0 chrY 11263324 11263366 -40250218 + (A)n Simple_repeat Simple_repeat 1 42 0 839 129 9 0 chrY 11263366 11263482 -40250102 - AluSq SINE Alu -196 117 1 267 233 56 33 chrY 11263485 11263575 -40250009 - LTR9 LTR ERV1 -512 100 9 1259 173 4 76 chrY 11263583 11263681 -40249903 - AluSx SINE Alu -79 233 129 2154 113 3 10 chrY 11263681 11263982 -40249602 - AluSg SINE Alu -11 299 1 1259 173 4 76 chrY 11263982 11264132 -40249452 - AluSx SINE Alu -183 129 3 1299 240 182 42 chrY 11264133 11264389 -40249195 - L1M3e LINE L1 -3996 2332 2113 1951 133 4 7 chrY 11264389 11264696 -40248888 + AluSp SINE Alu 5 310 0 1299 240 182 42 chrY 11264696 11264785 -40248799 - L1M3e LINE L1 -4215 2113 2038 1149 210 100 15 chrY 11264785 11265056 -40248528 - AluJb SINE Alu -8 294 1 1299 240 182 42 chrY 11265056 11265667 -40247917 - L1M3e LINE L1 -4290 2038 1260 21 36 0 0 chrY 11265682 11265710 -40247874 + AT_rich Low_complexity Low_complexity 1 28 0 222 134 45 0 chrY 11265719 11265786 -40247798 + (TA)n Simple_repeat Simple_repeat 1 70 0 550 219 65 14 chrY 11265810 11266025 -40247559 - L1 LINE L1 -4141 1187 962 471 149 0 0 chrY 11266035 11266109 -40247475 + AluS SINE Alu 229 302 -10 381 242 63 77 chrY 11266130 11266211 -40247373 - L1M3e LINE L1 -4984 1268 1187 2097 138 0 7 chrY 11266211 11266507 -40247077 - AluSx SINE Alu -18 294 1 381 242 63 77 chrY 11266507 11266675 -40246909 - L1M3e LINE L1 -5065 1187 1018 2201 173 68 15 chrY 11266675 11267142 -40246442 + LTR22B LTR ERVK 1 492 0 381 242 63 77 chrY 11267142 11267187 -40246397 - L1M3e LINE L1 -5234 1018 661 228 371 9 0 chrY 11267288 11267404 -40246180 - L1M3e LINE L1 -4754 574 458 1097 153 67 40 chrY 11267413 11267636 -40245948 + MER30 DNA MER1_type 2 230 0 4200 216 79 61 chrY 11267654 11269103 -40244481 + L1PB4 LINE L1 27 1448 -4880 1820 187 0 3 chrY 11269103 11269397 -40244187 + AluSx SINE Alu 1 293 -19 4200 216 79 61 chrY 11269397 11270258 -40243326 + L1PB4 LINE L1 1448 2383 -3945 1550 217 3 6 chrY 11270258 11270571 -40243013 + AluJb SINE Alu 1 312 0 4200 216 79 61 chrY 11270571 11271220 -40242364 + L1PB4 LINE L1 2383 3018 -3310 1186 238 13 16 chrY 11271242 11271530 -40242054 + L1PB4 LINE L1 4558 4846 -1482 198 0 0 0 chrY 11271530 11271552 -40242032 + (CAAAA)n Simple_repeat Simple_repeat 4 25 0 1186 238 13 16 chrY 11271552 11271641 -40241943 + L1PB4 LINE L1 4846 4934 -1394 1710 176 3 14 chrY 11271642 11271931 -40241653 + AluJb SINE Alu 3 288 -24 198 50 75 0 chrY 11271931 11271971 -40241613 + (TA)n Simple_repeat Simple_repeat 1 43 0 21 0 0 0 chrY 11272009 11272030 -40241554 + AT_rich Low_complexity Low_complexity 1 21 0 243 241 101 0 chrY 11272055 11272134 -40241450 + L1MC4 LINE L1 6612 6698 -1344 1016 230 22 4 chrY 11272143 11272417 -40241167 + L1PB4 LINE L1 4920 5198 -1130 3855 164 7 4 chrY 11272417 11273155 -40240429 - L1P LINE L1 -1195 4951 4212 4285 131 10 0 chrY 11273159 11273832 -40239752 + L1PA10 LINE L1 5486 6165 -3 1852 148 0 0 chrY 11273860 11274131 -40239453 - AluSx SINE Alu -41 271 1 4303 185 39 1 chrY 11274135 11275191 -40238393 + L1PB4 LINE L1 5227 6330 -8 461 306 48 77 chrY 11275282 11275402 -40238182 + L1MC4a LINE L1 4910 5032 -1114 2158 136 10 0 chrY 11275402 11275711 -40237873 + AluSx SINE Alu 1 312 0 461 306 48 77 chrY 11275711 11276087 -40237497 + L1MC4a LINE L1 5032 5392 -754 2232 120 3 0 chrY 11276090 11276389 -40237195 + AluSg SINE Alu 1 300 -10 1046 233 39 16 chrY 11276434 11276692 -40236892 + AluJo SINE Alu 19 282 -30 1102 293 75 22 chrY 11276730 11277358 -40236226 + L1MC4a LINE L1 5440 6100 -1708 3902 237 76 96 chrY 11277367 11278519 -40235065 - L1PA15-16 LINE L1 -3733 3116 1942 996 177 0 0 chrY 11278519 11278692 -40234892 - AluSg/x SINE Alu 0 306 134 3902 237 76 96 chrY 11278692 11279724 -40233860 - L1PA15-16 LINE L1 -4907 1942 600 1719 209 24 40 chrY 11279727 11280034 -40233550 - L1PA15-16 LINE L1 -6433 416 116 2173 137 0 9 chrY 11280034 11280349 -40233235 - AluSx SINE Alu 0 312 1 1719 209 24 40 chrY 11280349 11280462 -40233122 - L1PA15-16 LINE L1 -6733 116 3 471 214 24 8 chrY 11280467 11280593 -40232991 - L1M4c LINE L1 -2535 3847 3720 574 183 161 0 chrY 11280695 11280832 -40232752 + AluJb SINE Alu 1 159 -153 384 249 138 37 chrY 11280860 11281185 -40232399 - L1M4c LINE L1 -2694 3688 3331 360 285 48 30 chrY 11281200 11281470 -40232114 - L1M4c LINE L1 -3270 3112 2702 185 269 0 8 chrY 11281493 11281627 -40231957 + (TA)n Simple_repeat Simple_repeat 2 134 0 1063 200 10 10 chrY 11281676 11281876 -40231708 - AluJb SINE Alu -112 200 1 2095 125 23 0 chrY 11282042 11282345 -40231239 + AluSg SINE Alu 1 310 0 1217 153 13 47 chrY 11282983 11283219 -40230365 + MER57A LTR ERV1 135 362 -41 482 191 91 100 chrY 11283232 11283462 -40230122 - L1M4c LINE L1 -4014 2370 2143 1329 291 79 16 chrY 11283553 11284595 -40228989 - L1M4c LINE L1 -4244 2139 1041 366 327 75 31 chrY 11285021 11285247 -40228337 - L1M4c LINE L1 -5896 417 182 418 237 109 11 chrY 11285247 11285530 -40228054 + L1MDb LINE L1 1053 1363 -5046 5868 211 153 11 chrY 11285530 11287010 -40226574 - MER52A LTR ERV1 0 1755 67 1181 274 140 41 chrY 11287039 11287338 -40226246 + L1M4 LINE L1 2737 3005 -3141 1374 227 52 0 chrY 11287338 11287607 -40225977 - AluJo SINE Alu -27 285 3 1181 274 140 41 chrY 11287607 11288811 -40224773 + L1M4 LINE L1 3005 4389 -1757 8076 238 61 50 chrY 11288835 11292261 -40221323 + L1MA4A LINE L1 9 3399 -3449 1474 200 54 0 chrY 11292261 11292541 -40221043 + AluJo SINE Alu 5 299 -13 8076 238 61 50 chrY 11292541 11292562 -40221022 + L1MA4A LINE L1 3399 3418 -3430 575 178 44 59 chrY 11292562 11292697 -40220887 + FLAM_C SINE Alu 1 133 0 8076 238 61 50 chrY 11292697 11293341 -40220243 + L1MA4A LINE L1 3418 4148 -2700 1864 142 44 3 chrY 11293341 11293637 -40219947 + AluSg1 SINE Alu 1 308 -1 8076 238 61 50 chrY 11293637 11293883 -40219701 + L1MA4A LINE L1 4148 4390 -2458 2603 203 57 37 chrY 11294034 11294521 -40219063 + L1MA4A LINE L1 5215 5691 -1199 1648 174 8 0 chrY 11294521 11294785 -40218799 + AluSq SINE Alu 24 289 -24 378 57 43 14 chrY 11294788 11294858 -40218726 + (TAAAA)n Simple_repeat Simple_repeat 2 73 0 2603 203 57 37 chrY 11294858 11295293 -40218291 + L1MA4A LINE L1 5692 6145 -745 1722 198 24 54 chrY 11295307 11295364 -40218220 + L1MA4A LINE L1 6520 6577 -428 1645 195 7 0 chrY 11295364 11295651 -40217933 - AluJb SINE Alu -23 289 1 1722 198 24 54 chrY 11295651 11296094 -40217490 + L1MA4A LINE L1 6577 7005 0 360 309 73 0 chrY 11296106 11296242 -40217342 + L1M2 LINE L1 5131 5276 -1572 611 268 130 13 chrY 11296329 11296714 -40216870 + L1M2 LINE L1 5299 5728 -1120 1985 133 7 7 chrY 11297504 11297797 -40215787 - AluSx SINE Alu -17 295 3 2060 115 33 10 chrY 11298146 11298451 -40215133 + AluSq SINE Alu 2 313 0 1966 139 0 44 chrY 11298951 11299267 -40214317 + AluSg SINE Alu 1 302 -8 201 220 40 0 chrY 11300461 11300511 -40213073 + (CATATA)n Simple_repeat Simple_repeat 3 54 0 25 0 0 0 chrY 11300866 11300891 -40212693 + AT_rich Low_complexity Low_complexity 1 25 0 2158 124 7 0 chrY 11301562 11301860 -40211724 - AluSp SINE Alu -11 302 3 22 35 0 0 chrY 11302002 11302031 -40211553 + AT_rich Low_complexity Low_complexity 1 29 0 21 0 0 0 chrY 11302732 11302753 -40210831 + AT_rich Low_complexity Low_complexity 1 21 0 2797 3 0 0 chrY 11303442 11303744 -40209840 + AluYa5 SINE Alu 1 302 -9 3348 122 8 6 chrY 11304070 11304580 -40209004 + MER9 LTR ERVK 1 511 0 24579 76 9 7 chrY 11304580 11307981 -40205603 + HERVK9 LTR ERVK 1 3409 -2507 15054 73 6 0 chrY 11308003 11310022 -40203562 + HERVK9 LTR ERVK 3603 5634 -282 2064 75 11 0 chrY 11310118 11310397 -40203187 + HERVK9 LTR ERVK 5635 5916 0 3496 115 4 6 chrY 11310397 11310909 -40202675 + MER9 LTR ERVK 1 511 0 200 185 25 111 chrY 11312929 11313010 -40200574 + L2 LINE L2 3171 3244 -69 24 67 0 0 chrY 11313028 11313073 -40200511 + AT_rich Low_complexity Low_complexity 1 45 0 227 285 47 99 chrY 11313792 11313983 -40199601 - MIR3 SINE MIR -63 145 2 2168 116 3 0 chrY 11314105 11314397 -40199187 - AluSq SINE Alu -10 303 11 21 36 0 0 chrY 11314652 11314680 -40198904 + AT_rich Low_complexity Low_complexity 1 28 0 23757 123 55 25 chrY 11315373 11321096 -40192488 - L1PA7 LINE L1 -50 6419 378 552 15 0 0 chrY 11321096 11321161 -40192423 + (CAAAA)n Simple_repeat Simple_repeat 2 66 0 23757 123 55 25 chrY 11321161 11321551 -40192033 - L1PA7 LINE L1 -6091 378 1 2947 157 47 32 chrY 11321673 11322266 -40191318 + LTR43 LTR ERV1 1 602 0 1561 207 10 3 chrY 11322343 11322642 -40190942 + AluJb SINE Alu 3 303 -9 201 294 78 0 chrY 11323009 11323060 -40190524 - MIR SINE MIR -196 66 12 267 292 42 0 chrY 11323093 11323165 -40190419 + MIR SINE MIR 113 187 -75 789 255 40 51 chrY 11323232 11323646 -40189938 + MLT1D LTR MaLR 26 500 -5 316 341 59 24 chrY 11323871 11324041 -40189543 - MIR SINE MIR -86 176 1 183 42 0 0 chrY 11324280 11324304 -40189280 + (TTAA)n Simple_repeat Simple_repeat 3 26 0 602 217 51 29 chrY 11324309 11324447 -40189137 - AluSc SINE Alu -37 272 132 224 203 38 0 chrY 11325364 11325443 -40188141 + (TA)n Simple_repeat Simple_repeat 2 83 0 392 266 55 64 chrY 11325532 11325750 -40187834 + L1MC4 LINE L1 7390 7645 -203 1009 104 104 0 chrY 11325772 11325935 -40187649 - L1PA7 LINE L1 -110 6044 5865 841 96 0 0 chrY 11325935 11326047 -40187537 + L1PA7 LINE L1 6037 6151 -3 2017 95 46 11 chrY 11326053 11326372 -40187212 + AluSp SINE Alu 1 313 0 401 308 57 44 chrY 11326406 11326721 -40186863 + L1MC4 LINE L1 7723 8041 -1 1431 222 3 14 chrY 11327506 11327794 -40185790 + AluJb SINE Alu 1 285 -27 201 74 0 0 chrY 11327794 11327821 -40185763 + (TGAA)n Simple_repeat Simple_repeat 3 29 0 721 249 91 56 chrY 11327845 11327971 -40185613 + L1M1 LINE L1 2796 2916 -4650 2178 74 3 65 chrY 11327971 11328296 -40185288 + AluY SINE Alu 1 305 -6 721 249 91 56 chrY 11328296 11328675 -40184909 + L1M1 LINE L1 2916 3340 -4226 13084 197 111 29 chrY 11328873 11330798 -40182786 + L1M1 LINE L1 22 1788 -5777 1820 174 3 7 chrY 11330798 11331091 -40182493 - AluSg SINE Alu -18 292 1 13084 197 111 29 chrY 11331091 11331656 -40181928 + L1M1 LINE L1 1788 2305 -5260 1911 136 25 3 chrY 11331656 11331942 -40181642 + AluSq SINE Alu 1 292 -21 13084 197 111 29 chrY 11331942 11332060 -40181524 + L1M1 LINE L1 2305 2412 -5153 2044 121 7 10 chrY 11332060 11332357 -40181227 - AluSq SINE Alu -17 296 1 13084 197 111 29 chrY 11332357 11333667 -40179917 + L1M1 LINE L1 2412 4262 -3303 321 289 22 0 chrY 11333752 11333842 -40179742 + L1M1 LINE L1 4288 4379 -3186 3652 69 31 4 chrY 11333843 11334320 -40179264 + LTR2B LTR ERV1 1 490 0 2292 117 30 0 chrY 11334320 11334689 -40178895 + Harlequin LTR ERV1 1 380 -6516 * 4518 66 9 20 chrY 11334684 11335323 -40178261 + Harlequin LTR ERV1 262 893 -6003 * 4978 66 30 2 chrY 11335316 11336269 -40177315 + Harlequin LTR ERV1 1572 2574 -4322 * 12465 111 12 2 chrY 11336268 11338109 -40175475 + Harlequin LTR ERV1 3352 5210 -1686 8972 164 16 19 chrY 11339094 11340799 -40172785 + Harlequin LTR ERV1 5196 6896 0 3413 78 58 0 chrY 11340799 11341261 -40172323 + LTR2B LTR ERV1 1 489 -1 257 280 2 40 chrY 11341301 11341511 -40172073 + L1M1 LINE L1 3801 4003 -3562 189 94 0 0 chrY 11341524 11341556 -40172028 + (A)n Simple_repeat Simple_repeat 1 32 0 2307 199 64 45 chrY 11341570 11342108 -40171476 + L1M1 LINE L1 4403 4929 -2636 1974 157 10 0 chrY 11342108 11342408 -40171176 - AluSq SINE Alu -10 303 1 2307 199 64 45 chrY 11342408 11342429 -40171155 + L1M1 LINE L1 4929 4948 -2617 1736 96 131 4 chrY 11342429 11342689 -40170895 - AluSc SINE Alu -16 293 1 2307 199 64 45 chrY 11342689 11342923 -40170661 + L1M1 LINE L1 4948 5212 -2353 1975 114 74 0 chrY 11342920 11343274 -40170310 + L1PA10 LINE L1 5799 6176 0 * 1388 199 19 16 chrY 11343277 11343599 -40169985 + L1M1 LINE L1 5203 5525 -2040 4694 236 48 42 chrY 11343599 11343712 -40169872 + L1MA9 LINE L1 4606 4717 -2848 2086 128 7 7 chrY 11343712 11344018 -40169566 + AluSg SINE Alu 1 306 -4 4694 236 48 42 chrY 11344018 11344867 -40168717 + L1MA9 LINE L1 4717 5559 -2006 2023 133 7 17 chrY 11344867 11345160 -40168424 - AluSc SINE Alu -19 290 1 4694 236 48 42 chrY 11345160 11346057 -40167527 + L1MA9 LINE L1 5559 6477 -1088 660 251 52 14 chrY 11346072 11346283 -40167301 + L1MA9 LINE L1 7290 7508 -223 1521 220 30 44 chrY 11346285 11346319 -40167265 - MSTB1 LTR MaLR -6 426 393 2149 114 3 7 chrY 11346319 11346627 -40166957 + AluSq SINE Alu 1 307 -6 1521 220 30 44 chrY 11346627 11347024 -40166560 - MSTB1 LTR MaLR -39 393 1 3706 236 113 44 chrY 11347025 11348552 -40165032 - MSTB1-int LTR MaLR -3 1648 34 1010 147 162 5 chrY 11348590 11348794 -40164790 - MSTB1 LTR MaLR 0 432 197 294 188 12 35 chrY 11348797 11348882 -40164702 + L1MA9 LINE L1 7637 7719 -12 282 354 53 24 chrY 11349566 11349703 -40163881 - MIR SINE MIR -20 242 95 189 74 0 0 chrY 11349703 11349730 -40163854 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 282 354 53 24 chrY 11349730 11349801 -40163783 - MIR SINE MIR -167 95 28 2460 97 0 0 chrY 11350016 11350325 -40163259 + AluY SINE Alu 1 309 -2 1677 169 0 60 chrY 11350848 11351179 -40162405 + AluSx SINE Alu 1 311 -1 1804 128 3 74 chrY 11351826 11352138 -40161446 + AluSx SINE Alu 3 292 -20 1889 167 10 0 chrY 11352435 11352734 -40160850 - AluSx SINE Alu -10 302 1 972 220 180 12 chrY 11353988 11354238 -40159346 - AluJb SINE Alu -19 293 2 2856 224 102 30 chrY 11355362 11356471 -40157113 + Cheshire DNA MER1_type 1215 2403 -17 773 159 0 0 chrY 11358243 11358369 -40155215 - AluSg/x SINE Alu -11 301 176 24 85 0 0 chrY 11358776 11358835 -40154749 + AT_rich Low_complexity Low_complexity 1 59 0 1685 253 49 42 chrY 11358893 11359513 -40154071 + L1MB8 LINE L1 4909 5523 -655 1822 173 10 13 chrY 11359513 11359819 -40153765 + AluSx SINE Alu 1 305 -7 1685 253 49 42 chrY 11359819 11359880 -40153704 + L1MB8 LINE L1 5523 5582 -596 1796 189 14 0 chrY 11359880 11360177 -40153407 + AluSx SINE Alu 1 301 -11 1685 253 49 42 chrY 11360177 11360753 -40152831 + L1MB8 LINE L1 5582 6176 -2 2424 87 0 3 chrY 11360852 11361163 -40152421 + AluY SINE Alu 1 310 -1 2370 95 0 0 chrY 11361478 11361782 -40151802 + AluY SINE Alu 1 304 -7 846 278 68 16 chrY 11361800 11362228 -40151356 + L1MB4 LINE L1 3640 4089 -2057 3362 192 64 56 chrY 11362236 11362350 -40151234 + L1PA16 LINE L1 4529 4641 -1525 2172 98 10 10 chrY 11362350 11362646 -40150938 + AluY SINE Alu 1 296 -15 3362 192 64 56 chrY 11362646 11362857 -40150727 + L1PA16 LINE L1 4641 4849 -1317 2697 17 0 0 chrY 11362857 11363154 -40150430 + AluY SINE Alu 1 297 -14 3362 192 64 56 chrY 11363154 11363654 -40149930 + L1PA16 LINE L1 4849 5344 -822 2617 10 0 3 chrY 11363654 11363947 -40149637 + AluY SINE Alu 1 292 -19 3362 192 64 56 chrY 11363947 11364025 -40149559 + L1PA16 LINE L1 5344 5420 -746 1981 123 27 3 chrY 11364025 11364318 -40149266 + AluSp SINE Alu 1 300 -13 3362 192 64 56 chrY 11364318 11364680 -40148904 + L1PA16 LINE L1 5420 5778 -388 4162 104 55 14 chrY 11364680 11365321 -40148263 + PABL_B LTR ERV1 1 667 0 3362 192 64 56 chrY 11365321 11365699 -40147885 + L1PA16 LINE L1 5778 6154 -12 1880 100 4 8 chrY 11365719 11365978 -40147606 + AluY SINE Alu 45 302 -9 1146 272 72 10 chrY 11365981 11366470 -40147114 + L1MB4 LINE L1 4720 5238 -908 296 283 11 0 chrY 11366498 11366600 -40146984 + L1MB4 LINE L1 5525 5627 -547 468 195 163 14 chrY 11366626 11366833 -40146751 + L1MB4 LINE L1 5688 5939 -236 2213 118 3 0 chrY 11366874 11367180 -40146404 + AluSp SINE Alu 5 311 -2 375 149 0 15 chrY 11367229 11367296 -40146288 + MER4A LTR ERV1 33 98 -566 1352 154 20 49 chrY 11367296 11367652 -40145932 + MER4A LTR ERV1 261 664 0 2987 116 143 45 chrY 11367656 11368353 -40145231 + MER4A-int LTR ERV1 2 835 -5763 266 125 0 0 chrY 11368451 11368499 -40145085 + MER4A-int LTR ERV1 839 886 -5712 * 365 150 0 0 chrY 11368497 11368557 -40145027 + MER4A-int LTR ERV1 993 1052 -5546 1906 162 0 0 chrY 11368557 11368847 -40144737 - AluSx SINE Alu -22 290 1 438 122 0 0 chrY 11368847 11368921 -40144663 + MER4A-int LTR ERV1 2420 2493 -4105 1031 167 103 8 chrY 11368924 11369158 -40144426 - LTR8 LTR ERV1 -435 256 1 2615 147 82 98 chrY 11369158 11369422 -40144162 + MER4A-int LTR ERV1 2737 3004 -3594 1997 139 11 0 chrY 11369422 11369768 -40143816 + AluSx SINE Alu 1 349 0 2615 147 82 98 chrY 11369768 11370272 -40143312 + MER4A-int LTR ERV1 3004 3491 -3107 1751 164 22 0 chrY 11370272 11370547 -40143037 + AluSc SINE Alu 1 281 -28 2615 147 82 98 chrY 11370547 11370734 -40142850 + MER4A-int LTR ERV1 3491 3679 -2919 10223 131 85 18 chrY 11370742 11372848 -40140736 + MER4A-int LTR ERV1 3842 6088 -510 649 78 0 0 chrY 11372850 11372940 -40140644 + MER4A-int LTR ERV1 6495 6584 -14 444 158 32 11 chrY 11372959 11373054 -40140530 + MER4A LTR ERV1 1 97 -567 1676 158 9 22 chrY 11373055 11373403 -40140181 + MER4A LTR ERV1 261 662 -2 477 220 45 9 chrY 11373409 11373558 -40140026 + L1MB3 LINE L1 6001 6144 -27 1895 155 7 0 chrY 11373831 11374127 -40139457 - AluSx SINE Alu -14 298 1 2173 126 3 7 chrY 11374660 11374969 -40138615 + AluSx SINE Alu 3 310 -2 321 177 0 0 chrY 11375614 11375676 -40137908 + MER4A-int LTR ERV1 4405 4466 -1120 537 103 35 0 chrY 11375679 11375766 -40137818 + MER4A-int LTR ERV1 6495 6584 -14 459 156 31 10 chrY 11375786 11375882 -40137702 + MER4A LTR ERV1 1 98 -566 673 234 41 18 chrY 11377398 11377569 -40136015 - MER58A DNA MER1_type -12 212 38 23 33 0 0 chrY 11378557 11378587 -40134997 + AT_rich Low_complexity Low_complexity 1 30 0 1905 130 3 0 chrY 11379490 11379818 -40133766 + AluSp SINE Alu 2 330 0 241 242 15 0 chrY 11380151 11380217 -40133367 + CT-rich Low_complexity Low_complexity 4 70 0 23 54 0 0 chrY 11380465 11380502 -40133082 + AT_rich Low_complexity Low_complexity 1 37 0 461 269 0 7 chrY 11381092 11381237 -40132347 + L1MB8 LINE L1 6029 6172 -6 8245 153 92 17 chrY 11381784 11383540 -40130044 + L1P3 LINE L1 14 1885 -4576 * 10995 127 24 7 chrY 11383536 11385300 -40128284 + L1P LINE L1 3379 5182 -964 3244 121 29 26 chrY 11385300 11385846 -40127738 + LTR14 LTR ERVK 1 548 0 10995 127 24 7 chrY 11385846 11386021 -40127563 + L1P LINE L1 5182 5352 -794 6050 89 15 2 chrY 11386021 11386903 -40126681 + L1PA8 LINE L1 5270 6163 -9 654 274 69 19 chrY 11388259 11388722 -40124862 + L1M4 LINE L1 2700 3185 -2961 403 291 89 22 chrY 11388863 11389176 -40124408 + L1M4 LINE L1 3555 3888 -2258 * 801 240 103 6 chrY 11389169 11389498 -40124086 + L1M4 LINE L1 4692 5052 -1094 244 139 70 128 chrY 11389511 11389556 -40124028 - MLT2C1 LTR ERVL -243 154 115 1808 146 0 76 chrY 11389556 11389771 -40123813 - AluSx SINE Alu -9 303 120 2085 134 0 19 chrY 11389771 11390084 -40123500 + AluSx SINE Alu 1 307 -5 1808 146 0 76 chrY 11390084 11390196 -40123388 - AluSx SINE Alu -192 120 1 244 139 70 128 chrY 11390196 11390236 -40123348 - MLT2C1 LTR ERVL -282 115 74 484 225 116 66 chrY 11390320 11390756 -40122828 + LTR15 LTR ERV1 193 596 0 15519 286 41 46 chrY 11390775 11398280 -40115304 + HERV3 LTR ERV1 19 7718 -1017 437 374 0 9 chrY 11398358 11398585 -40114999 + HERV3 LTR ERV1 8202 8426 0 683 235 90 108 chrY 11398676 11398983 -40114601 + LTR30 LTR ERV1 108 368 -125 2095 105 0 14 chrY 11398983 11399278 -40114306 + AluY SINE Alu 1 291 -20 683 235 90 108 chrY 11399278 11399402 -40114182 + LTR30 LTR ERV1 368 493 0 208 320 73 87 chrY 11399574 11399874 -40113710 - L2 LINE L2 -22 3291 2996 310 227 40 13 chrY 11399886 11399961 -40113623 - MER2 DNA MER2_type 0 345 269 568 253 56 25 chrY 11400239 11400401 -40113183 + L1MB5 LINE L1 5854 6020 -154 * 1764 269 53 37 chrY 11400376 11400994 -40112590 + L1MCa LINE L1 130 757 -5669 625 166 7 28 chrY 11401052 11401197 -40112387 + LTR21A LTR ERV1 345 486 -19 554 215 77 48 chrY 11401197 11401406 -40112178 + L1MCa LINE L1 1346 1560 -4866 1488 217 49 23 chrY 11401415 11401760 -40111824 + MLT1A1 LTR MaLR 11 364 -1 311 203 170 4 chrY 11401761 11401894 -40111690 + L1MCa LINE L1 1554 1815 -4611 348 252 65 9 chrY 11401913 11402020 -40111564 + L1MC2 LINE L1 6222 6334 -10 1809 185 96 23 chrY 11402176 11402604 -40110980 + LTR2B LTR ERV1 32 490 0 355 266 13 0 chrY 11402983 11403062 -40110522 - Tigger7 DNA MER2_type 0 2487 2408 1213 203 58 16 chrY 11403075 11403317 -40110267 - Tigger7 DNA MER2_type -466 267 16 9563 166 68 74 chrY 11403368 11403853 -40109731 + Tigger1 DNA MER2_type 1 488 -1930 1663 184 0 7 chrY 11403853 11404152 -40109432 - AluJo SINE Alu -15 297 1 9563 166 68 74 chrY 11404152 11405668 -40107916 + Tigger1 DNA MER2_type 488 1987 -431 1879 138 18 0 chrY 11405668 11405950 -40107634 + AluSx SINE Alu 5 291 -21 9563 166 68 74 chrY 11405950 11406380 -40107204 + Tigger1 DNA MER2_type 1987 2418 0 2191 107 0 0 chrY 11407699 11407998 -40105586 - AluY SINE Alu -12 299 1 1994 130 0 7 chrY 11408065 11408365 -40105219 + AluSc SINE Alu 6 303 -6 351 294 125 33 chrY 11408496 11408680 -40104904 + L1MC4a LINE L1 5697 5897 -1911 260 125 0 0 chrY 11408734 11408782 -40104802 + AluSp/q SINE Alu 255 302 -1 1774 170 7 7 chrY 11408812 11409106 -40104478 + AluSx SINE Alu 1 294 -18 21 36 0 0 chrY 11409628 11409656 -40103928 + AT_rich Low_complexity Low_complexity 1 28 0 34 65 0 0 chrY 11410454 11410516 -40103068 + AT_rich Low_complexity Low_complexity 1 62 0 21 36 0 0 chrY 11411281 11411309 -40102275 + AT_rich Low_complexity Low_complexity 1 28 0 1281 244 3 10 chrY 11411578 11411881 -40101703 - AluJb SINE Alu -11 301 1 348 327 42 42 chrY 11413788 11413956 -40099628 + MIR3 SINE MIR 41 208 0 2074 124 3 0 chrY 11414454 11414745 -40098839 - AluSg SINE Alu -18 292 1 1325 187 56 4 chrY 11414749 11415016 -40098568 - AluJo SINE Alu -18 294 14 1326 172 135 11 chrY 11415908 11416175 -40097409 - AluSg SINE Alu 0 300 1 215 266 29 54 chrY 11416185 11416282 -40097302 - MIR SINE MIR -129 79 12 21 57 0 0 chrY 11416515 11416550 -40097034 + AT_rich Low_complexity Low_complexity 1 35 0 1326 147 9 0 chrY 11416773 11416984 -40096600 + AluSg/x SINE Alu 97 309 -1 61 46 0 39 chrY 11417089 11417219 -40096365 + AT_rich Low_complexity Low_complexity 1 125 0 2127 115 3 0 chrY 11417409 11417705 -40095879 - AluY SINE Alu -14 297 1 1584 191 0 11 chrY 11418400 11418683 -40094901 - AluSx SINE Alu -28 284 5 24 32 0 0 chrY 11418805 11418836 -40094748 + AT_rich Low_complexity Low_complexity 1 31 0 2183 78 3 19 chrY 11419606 11419913 -40093671 - AluY SINE Alu -9 302 1 1741 151 4 0 chrY 11419916 11420194 -40093390 - AluSx SINE Alu -5 307 29 832 228 147 9 chrY 11420294 11420526 -40093058 + Tigger7 DNA MER2_type 1 264 -469 230 225 112 22 chrY 11420529 11420618 -40092966 + Tigger7 DNA MER2_type 2395 2491 0 27 0 0 0 chrY 11420618 11420645 -40092939 + AT_rich Low_complexity Low_complexity 1 27 0 25 0 0 0 chrY 11420924 11420949 -40092635 + AT_rich Low_complexity Low_complexity 1 25 0 34 65 0 0 chrY 11421024 11421086 -40092498 + AT_rich Low_complexity Low_complexity 1 62 0 23 33 0 0 chrY 11421482 11421512 -40092072 + AT_rich Low_complexity Low_complexity 1 30 0 1550 176 3 30 chrY 11422310 11422605 -40090979 + AluJb SINE Alu 1 287 -25 671 230 224 13 chrY 11422624 11422889 -40090695 + L1MB5 LINE L1 3954 4296 -1850 249 119 0 0 chrY 11422889 11422931 -40090653 + (CA)n Simple_repeat Simple_repeat 1 42 0 671 230 224 13 chrY 11422931 11422978 -40090606 + L1MB5 LINE L1 4296 4332 -1814 957 226 25 69 chrY 11422978 11423253 -40090331 + Tigger7 DNA MER2_type 4 266 -284 239 263 40 53 chrY 11423265 11423341 -40090243 + Tigger7 DNA MER2_type 2402 2476 -11 2767 246 95 11 chrY 11423396 11425036 -40088548 + L1MB5 LINE L1 4341 6130 -44 579 244 0 15 chrY 11425050 11425181 -40088403 + AluJo SINE Alu 37 165 -147 407 119 0 0 chrY 11425333 11425392 -40088192 - AluJ/FLAM SINE Alu -207 95 37 871 195 126 0 chrY 11425394 11425625 -40087959 - L1MB4 LINE L1 -39 6141 5882 1710 100 0 4 chrY 11425645 11425874 -40087710 - AluSc SINE Alu -81 228 1 2566 257 110 67 chrY 11426181 11428086 -40085498 - L1MC3 LINE L1 -751 5395 4845 393 351 73 11 chrY 11428087 11428278 -40085306 + L1MDb LINE L1 73 275 -6134 686 247 82 46 chrY 11428362 11428974 -40084610 + L1MDb LINE L1 659 1504 -4902 2021 133 3 0 chrY 11428974 11429276 -40084308 + AluSq SINE Alu 1 303 -10 686 247 82 46 chrY 11429276 11429322 -40084262 + L1MDb LINE L1 1504 1547 -4859 590 254 207 17 chrY 11429325 11429852 -40083732 + L1MDb LINE L1 1662 2288 -4118 24 0 0 0 chrY 11430012 11430036 -40083548 + AT_rich Low_complexity Low_complexity 1 24 0 1939 155 3 0 chrY 11430036 11430326 -40083258 + AluSx SINE Alu 1 291 -21 936 206 41 10 chrY 11430334 11430528 -40083056 - AluSx SINE Alu -108 204 5 410 62 0 31 chrY 11430571 11430636 -40082948 + AluJ/FLAM SINE Alu 1 63 -249 240 299 63 17 chrY 11430688 11430862 -40082722 + L1M4 LINE L1 912 1093 -5449 1769 240 123 33 chrY 11430874 11432800 -40080784 + L1MCa LINE L1 12 2264 -4162 1718 144 49 0 chrY 11432800 11433064 -40080520 + AluSq SINE Alu 3 279 -34 1769 240 123 33 chrY 11433064 11433227 -40080357 + L1MCa LINE L1 2264 2411 -4015 1359 220 70 3 chrY 11433228 11433542 -40080042 + Tigger3(Golem) DNA MER2_type 2 336 -2693 26 0 0 0 chrY 11433547 11433573 -40080011 + AT_rich Low_complexity Low_complexity 1 26 0 395 273 99 47 chrY 11433628 11433869 -40079715 + L1MCa LINE L1 2626 2877 -3549 696 289 12 0 chrY 11433892 11434065 -40079519 + MER8 DNA MER2_type 2 176 -63 522 225 40 72 chrY 11434081 11434303 -40079281 + L1MCa LINE L1 2946 3160 -3266 1895 268 90 24 chrY 11434333 11434562 -40079022 + L1MCa LINE L1 3088 3300 -3126 1787 150 44 0 chrY 11434562 11434856 -40078728 + AluSx SINE Alu 1 307 -5 1861 113 57 3 chrY 11434858 11435140 -40078444 + AluY SINE Alu 1 297 -14 1895 268 90 24 chrY 11435140 11435928 -40077656 + L1MCa LINE L1 3300 4176 -2250 1567 184 0 0 chrY 11435946 11436212 -40077372 + AluSx SINE Alu 23 288 -24 595 243 77 48 chrY 11436223 11436393 -40077191 + L1MCa LINE L1 4437 4601 -1825 1842 153 10 10 chrY 11436393 11436688 -40076896 - AluSp SINE Alu -18 295 1 595 243 77 48 chrY 11436688 11436892 -40076692 + L1MCa LINE L1 4601 4822 -1604 947 259 92 0 chrY 11436999 11437250 -40076334 - AluJo SINE Alu -38 274 1 741 187 0 0 chrY 11437270 11437393 -40076191 - FLAM_C SINE Alu -9 124 2 2822 3 0 0 chrY 11437636 11437943 -40075641 - AluYa5 SINE Alu -4 307 1 1429 146 9 89 chrY 11438233 11438548 -40075036 + AluSx SINE Alu 1 290 -12 30 0 0 0 chrY 11439039 11439069 -40074515 + AT_rich Low_complexity Low_complexity 1 30 0 1994 148 0 0 chrY 11439071 11439369 -40074215 + AluSq SINE Alu 1 298 -15 4742 224 84 30 chrY 11439891 11440228 -40073356 - L1M2 LINE L1 -499 5813 5496 1729 139 92 14 chrY 11440228 11440574 -40073010 + THE1C LTR MaLR 1 373 -2 4742 224 84 30 chrY 11440574 11442195 -40071389 - L1M2 LINE L1 -816 5496 3742 2362 132 11 19 chrY 11442958 11443322 -40070262 + THE1C LTR MaLR 15 375 0 1168 221 37 27 chrY 11443433 11443731 -40069853 + AluJo SINE Alu 1 301 -1 895 86 78 0 chrY 11443878 11444006 -40069578 - MER85 DNA T2_type 0 139 2 1121 235 76 0 chrY 11444404 11444681 -40068903 - AluJo SINE Alu -3 299 2 1252 180 69 59 chrY 11446909 11447198 -40066386 + AluJb SINE Alu 7 298 -14 297 0 0 0 chrY 11447203 11447236 -40066348 + (CA)n Simple_repeat Simple_repeat 2 34 0 1997 127 13 16 chrY 11447447 11447755 -40065829 - AluSx SINE Alu -5 307 1 22 35 0 0 chrY 11448749 11448778 -40064806 + AT_rich Low_complexity Low_complexity 1 29 0 1158 215 106 11 chrY 11449881 11450417 -40063167 + L1MB4 LINE L1 4900 5488 -696 563 209 45 47 chrY 11450488 11450660 -40062924 + L1P4 LINE L1 5655 5827 -341 599 178 0 0 chrY 11450661 11450768 -40062816 + FRAM SINE Alu 62 168 -8 1048 238 102 9 chrY 11450768 11451091 -40062493 + L1MB4 LINE L1 5823 6175 -5 612 225 93 24 chrY 11451265 11451560 -40062024 + MER34B LTR ERV1 1 361 -204 2469 133 141 24 chrY 11451614 11452116 -40061468 + LTR24B LTR ERV1 9 569 -7 240 194 30 15 chrY 11452129 11452196 -40061388 + MER34B LTR ERV1 427 494 -71 225 149 391 35 chrY 11452320 11452407 -40061177 + L1MD2 LINE L1 6191 6308 -51 1030 271 112 6 chrY 11452527 11452885 -40060699 + MSTD LTR MaLR 1 396 0 2129 125 17 0 chrY 11453139 11453436 -40060148 + AluSq SINE Alu 3 304 -9 462 235 0 20 chrY 11454621 11454723 -40058861 - Tigger7 DNA MER2_type 0 2587 2488 828 151 184 110 chrY 11454725 11454842 -40058742 - Tigger7 DNA MER2_type -470 263 156 2135 127 0 0 chrY 11454842 11455133 -40058451 - AluSc SINE Alu -16 293 3 828 151 184 110 chrY 11455133 11455260 -40058324 - Tigger7 DNA MER2_type -577 156 1 762 223 32 0 chrY 11455305 11455462 -40058122 + FAM SINE Alu 1 162 -13 1851 180 74 2 chrY 11456166 11456600 -40056984 + L1MA6 LINE L1 5324 5788 -503 421 225 8 33 chrY 11456690 11456810 -40056774 + MER6 DNA MER2_type 25 862 -3 1832 189 75 31 chrY 11456817 11457268 -40056316 + L1MA6 LINE L1 5830 6300 0 31 0 0 0 chrY 11457268 11457299 -40056285 + AT_rich Low_complexity Low_complexity 1 31 0 270 259 17 9 chrY 11458231 11458347 -40055237 + (TA)n Simple_repeat Simple_repeat 1 117 0 286 205 154 0 chrY 11458347 11458464 -40055120 - L1MA9 LINE L1 -25 6287 6153 233 271 141 0 chrY 11459910 11459995 -40053589 + MLT1L LTR MaLR 450 546 -69 2158 238 32 30 chrY 11461061 11461663 -40051921 + MER77 LTR ERV1 3 605 0 1377 211 0 4 chrY 11463053 11463314 -40050270 - AluJo SINE Alu -32 280 21 415 293 9 48 chrY 11463371 11463600 -40049984 - L1M4 LINE L1 -1180 4966 4747 1851 252 74 95 chrY 11464451 11465546 -40048038 + MER52A LTR ERV1 684 1755 0 2295 164 31 11 chrY 11466591 11467036 -40046548 - Tigger4(Zombi) DNA MER2_type 0 2731 2278 1377 212 55 13 chrY 11467051 11467358 -40046226 + MER7A DNA MER2_type 29 346 0 609 87 0 95 chrY 11467358 11467484 -40046100 - Tigger4(Zombi) DNA MER2_type -462 2269 2156 910 174 0 0 chrY 11467490 11467639 -40045945 - AluSg/x SINE Alu -23 289 141 4875 168 80 6 chrY 11467681 11468627 -40044957 - Tigger4(Zombi) DNA MER2_type -647 2084 1069 3634 183 95 12 chrY 11468623 11469394 -40044190 - Tigger4(Zombi) DNA MER2_type -1892 839 5 * 624 168 7 87 chrY 11469393 11469464 -40044120 - Tigger4(Zombi) DNA MER2_type -1920 811 757 * 5541 52 7 3 chrY 11469464 11470161 -40043423 - L1PA5 LINE L1 -6 6148 5449 624 168 7 87 chrY 11470161 11470238 -40043346 - Tigger4(Zombi) DNA MER2_type -1974 757 675 2978 188 96 3 chrY 11470359 11470993 -40042591 - MER54A LTR ERVL 0 901 209 712 194 65 0 chrY 11470995 11471134 -40042450 - MER47A DNA MER2_type 0 366 219 1089 204 27 5 chrY 11471134 11471354 -40042230 - AluJb SINE Alu -1 311 87 1055 215 14 9 chrY 11471359 11471582 -40042002 - MER47A DNA MER2_type -141 225 2 707 264 35 30 chrY 11471582 11471777 -40041807 - MER54A LTR ERVL -692 209 14 1518 203 45 13 chrY 11471844 11472218 -40041366 + L1P LINE L1 4675 5060 -1086 3265 156 61 75 chrY 11472219 11473459 -40040125 + L1PA14 LINE L1 4927 6144 -17 231 345 22 29 chrY 11474231 11474370 -40039214 + L1MEc LINE L1 266 403 -5993 326 290 179 28 chrY 11474598 11474850 -40038734 + L1MDa LINE L1 137 426 -6114 1929 151 0 0 chrY 11475669 11475978 -40037606 + AluSg SINE Alu 1 309 0 1859 136 28 0 chrY 11475987 11476273 -40037311 + AluY SINE Alu 1 294 -17 400 238 12 0 chrY 11476279 11476363 -40037221 + FLAM_A SINE Alu 48 121 -12 568 207 45 29 chrY 11476480 11476720 -40036864 + L1MC/D LINE L1 5194 5436 -743 309 347 32 23 chrY 11476793 11477009 -40036575 + L1M3b LINE L1 1451 1668 -5828 1725 269 90 26 chrY 11477409 11479367 -40034217 + L1M3b LINE L1 2114 4058 -3507 5719 232 38 6 chrY 11479372 11481068 -40032516 - L1P5 LINE L1 -617 5539 3794 1451 185 120 95 chrY 11481081 11481616 -40031968 + LTR10A LTR ERV1 1 548 -61 2212 227 19 19 chrY 11481628 11482197 -40031387 - L1 LINE L1 -2361 3785 3217 1114 199 30 56 chrY 11482213 11482480 -40031104 + AluJb SINE Alu 12 271 -41 1950 229 73 30 chrY 11482517 11483823 -40029761 + L1M3b LINE L1 4621 6108 -1457 5274 273 59 15 chrY 11483825 11485740 -40027844 + L1M2 LINE L1 899 2898 -3951 1520 173 12 0 chrY 11485760 11486009 -40027575 - AluSx SINE Alu -25 287 36 1922 243 66 18 chrY 11486029 11486769 -40026815 + L1M2 LINE L1 2887 3662 -3186 3844 270 56 60 chrY 11487241 11488511 -40025073 + HERV15 LTR ERV1 26 1125 -7301 333 0 0 0 chrY 11488511 11488548 -40025036 + (CA)n Simple_repeat Simple_repeat 2 38 0 3844 270 56 60 chrY 11488548 11489438 -40024146 + HERV15 LTR ERV1 1125 2017 -6409 * 4006 297 25 30 chrY 11489418 11490770 -40022814 + HERV3 LTR ERV1 3492 4836 -3590 2972 290 39 18 chrY 11490797 11491784 -40021800 + HERV3 LTR ERV1 5165 6171 -2255 201 196 0 0 chrY 11491811 11491857 -40021727 + (TAAG)n Simple_repeat Simple_repeat 1 46 0 4070 296 73 59 chrY 11491858 11492727 -40020857 + HERV3 LTR ERV1 6153 7008 -1418 186 71 0 0 chrY 11492727 11492755 -40020829 + (TTTTA)n Simple_repeat Simple_repeat 5 32 0 4070 296 73 59 chrY 11492755 11494064 -40019520 + HERV3 LTR ERV1 7008 8363 -63 202 122 0 61 chrY 11494666 11494715 -40018869 + (TAAAA)n Simple_repeat Simple_repeat 3 48 0 689 248 64 32 chrY 11495164 11495446 -40018138 + L1M2 LINE L1 3584 3874 -2974 680 131 0 0 chrY 11495537 11495636 -40017948 + AluS SINE Alu 1 99 -213 650 184 49 5 chrY 11495648 11495833 -40017751 + L1M2 LINE L1 3951 4143 -2705 816 182 20 5 chrY 11495838 11496041 -40017543 + L1M2 LINE L1 4039 4244 -2604 581 219 58 34 chrY 11496016 11496221 -40017363 + L1PB4 LINE L1 6649 6858 0 * 478 271 109 44 chrY 11496264 11496421 -40017163 + L1M4 LINE L1 2554 2699 -3447 1956 142 7 3 chrY 11496421 11496723 -40016861 + AluSc SINE Alu 3 305 -4 478 271 109 44 chrY 11496723 11496788 -40016796 + L1M4 LINE L1 2699 2758 -3388 342 0 0 0 chrY 11496788 11496826 -40016758 + (TA)n Simple_repeat Simple_repeat 2 39 0 478 271 109 44 chrY 11496826 11497171 -40016413 + L1M4 LINE L1 2758 3159 -2987 1271 248 13 6 chrY 11497174 11497489 -40016095 - L1P LINE L1 -1927 4219 3903 2391 104 42 13 chrY 11497491 11497877 -40015707 + L1PA15 LINE L1 5769 6165 0 507 189 42 0 chrY 11497995 11498090 -40015494 + AluJ/FLAM SINE Alu 1 99 -213 705 56 0 0 chrY 11498095 11498185 -40015399 + (TAGA)n Simple_repeat Simple_repeat 2 91 0 545 283 119 8 chrY 11498217 11498468 -40015116 + L1M4 LINE L1 4519 4797 -1349 1977 94 0 30 chrY 11498508 11498807 -40014777 - L1PA7 LINE L1 0 6154 5865 984 212 65 23 chrY 11498825 11499131 -40014453 + L1MC3 LINE L1 7467 7785 0 753 257 76 9 chrY 11499217 11499427 -40014157 + L1M3a LINE L1 6 229 -5726 823 219 159 39 chrY 11499528 11499997 -40013587 - L1M4 LINE L1 -514 5664 5141 725 236 75 28 chrY 11499990 11500244 -40013340 + L1MB8 LINE L1 5913 6178 0 * 1000 305 94 37 chrY 11501779 11502086 -40011498 + L1M4b LINE L1 103 391 -6468 2111 128 0 0 chrY 11502086 11502384 -40011200 + AluY SINE Alu 1 298 -13 1000 305 94 37 chrY 11502384 11502892 -40010692 + L1M4b LINE L1 391 965 -5894 486 293 177 41 chrY 11502987 11503478 -40010106 + L1MDa LINE L1 169 726 -5814 1666 170 33 14 chrY 11503630 11503906 -40009678 + AluSx SINE Alu 1 281 -31 436 291 59 16 chrY 11504001 11504358 -40009226 + L1MDa LINE L1 1174 1557 -4983 423 259 29 14 chrY 11504426 11504565 -40009019 + L1MB5 LINE L1 285 425 -6424 1491 235 96 25 chrY 11504567 11505416 -40008168 + L1MB5 LINE L1 5378 6299 -583 1045 83 0 0 chrY 11505484 11505616 -40007968 + AluSq/x SINE Alu 2 133 -179 975 164 0 0 chrY 11505635 11505781 -40007803 + AluSp SINE Alu 121 266 -47 960 238 84 20 chrY 11505796 11506140 -40007444 + L1MB5 LINE L1 6354 6719 -157 1842 168 13 0 chrY 11506199 11506503 -40007081 + AluSq SINE Alu 1 308 -5 733 227 91 31 chrY 11506503 11506855 -40006729 + L1MB4 LINE L1 5808 6180 0 1860 229 43 7 chrY 11507145 11507582 -40006002 - MER88 LTR ERVL -11 453 1 432 276 35 58 chrY 11507615 11507872 -40005712 + HAL1 LINE L1 1461 1711 -796 1165 259 24 10 chrY 11507893 11508187 -40005397 + AluJb SINE Alu 1 298 -4 402 232 119 55 chrY 11508712 11509057 -40004527 + L1ME LINE L1 4235 4601 -1545 2122 202 63 13 chrY 11509098 11509652 -40003932 + L1MC3 LINE L1 7138 7719 -66 4098 27 0 0 chrY 11509704 11510312 -40003272 - L1PA4 LINE L1 -398 5757 5150 3239 45 17 0 chrY 11510312 11510713 -40002871 + L1PA4 LINE L1 5742 6152 -3 1566 220 3 0 chrY 11511963 11512259 -40001325 + AluJb SINE Alu 1 297 -15 928 179 127 11 chrY 11512260 11512528 -40001056 + L1MA8 LINE L1 5989 6287 -4 300 161 36 36 chrY 11512689 11512801 -40000783 + GA-rich Low_complexity Low_complexity 3 114 0 324 300 15 54 chrY 11512875 11513005 -40000579 + L1ME LINE L1 5481 5605 -516 1663 122 26 82 chrY 11513174 11513477 -40000107 - AluSx SINE Alu -26 286 1 1664 189 65 21 chrY 11513849 11514386 -39999198 - L1MB5 LINE L1 0 6171 5589 225 94 0 0 chrY 11514386 11514418 -39999166 + (TA)n Simple_repeat Simple_repeat 2 33 0 5169 62 1 1 chrY 11514418 11515074 -39998510 - L1PA5 LINE L1 -9 6145 5490 604 272 88 33 chrY 11515753 11516025 -39997559 - MER82 DNA MER2_type -10 643 357 1879 149 0 55 chrY 11516033 11516342 -39997242 + AluSx SINE Alu 1 292 -20 1970 109 10 33 chrY 11516342 11516644 -39996940 + AluY SINE Alu 1 296 -15 194 136 0 51 chrY 11516647 11516706 -39996878 + (TAAAA)n Simple_repeat Simple_repeat 5 60 0 1279 195 3 65 chrY 11516732 11517071 -39996513 - MER82 DNA MER2_type -301 352 35 1250 186 40 90 chrY 11517200 11517554 -39996030 - MER70A LTR ERVL -117 355 20 1183 97 0 0 chrY 11517720 11517885 -39995699 + L1PA11 LINE L1 6009 6173 -1 1940 142 3 3 chrY 11518453 11518742 -39994842 - AluSg SINE Alu -16 294 6 1940 124 19 32 chrY 11519031 11519346 -39994238 + AluSx SINE Alu 2 312 0 2089 130 10 0 chrY 11519534 11519833 -39993751 + AluSx SINE Alu 1 302 -10 2196 84 7 17 chrY 11519937 11520235 -39993349 + AluY SINE Alu 1 295 -16 2196 113 10 0 chrY 11520757 11521048 -39992536 - AluSx SINE Alu -14 298 5 192 97 0 0 chrY 11522199 11522230 -39991354 + (TAA)n Simple_repeat Simple_repeat 1 31 0 322 235 0 0 chrY 11522419 11522487 -39991097 + MER33 DNA MER1_type 17 84 -240 325 254 36 36 chrY 11522744 11522909 -39990675 + L1ME1 LINE L1 5811 5975 -191 1825 126 0 11 chrY 11523108 11523379 -39990205 + AluSc SINE Alu 25 292 -17 253 274 60 60 chrY 11523493 11523694 -39989890 + L1M4b LINE L1 1330 1530 -5329 421 200 59 0 chrY 11523707 11523792 -39989792 + AluJb SINE Alu 207 296 -16 2520 161 39 9 chrY 11523792 11524357 -39989227 + L1PB4 LINE L1 5322 5903 -253 1313 133 0 5 chrY 11524520 11524715 -39988869 + AluSg SINE Alu 1 194 -116 986 154 0 0 chrY 11524722 11524871 -39988713 + AluSg/x SINE Alu 156 304 -6 447 280 59 0 chrY 11525166 11525352 -39988232 + L1M4b LINE L1 2228 2424 -4535 520 197 38 154 chrY 11525449 11525511 -39988073 + L1M4b LINE L1 2669 2737 -4220 1779 140 38 7 chrY 11525511 11525804 -39987780 + AluSq SINE Alu 1 302 -11 520 197 38 154 chrY 11525804 11526235 -39987349 + L1M4b LINE L1 2737 3105 -3852 898 225 0 0 chrY 11526273 11526442 -39987142 - AluJb SINE Alu -143 169 1 2051 141 0 3 chrY 11527288 11527585 -39985999 + AluSq SINE Alu 1 296 -17 22 35 0 0 chrY 11528272 11528301 -39985283 + AT_rich Low_complexity Low_complexity 1 29 0 1111 214 102 20 chrY 11528692 11528996 -39984588 + MSTD LTR MaLR 1 329 -67 182 118 29 0 chrY 11529496 11529530 -39984054 + (TA)n Simple_repeat Simple_repeat 2 36 0 26 0 0 0 chrY 11529963 11529989 -39983595 + AT_rich Low_complexity Low_complexity 1 26 0 198 0 0 0 chrY 11532214 11532236 -39981348 + (A)n Simple_repeat Simple_repeat 1 22 0 2959 116 116 36 chrY 11532462 11532656 -39980928 - MER4A LTR ERV1 -2 598 421 2274 105 3 0 chrY 11532656 11532961 -39980623 + AluSp SINE Alu 1 306 -7 2959 116 116 36 chrY 11532961 11533320 -39980264 - MER4A LTR ERV1 -179 421 1 226 232 143 0 chrY 11534072 11534128 -39979456 + MIR SINE MIR 49 112 -150 27 0 0 0 chrY 11534421 11534448 -39979136 + AT_rich Low_complexity Low_complexity 1 27 0 6155 102 17 2 chrY 11534581 11535272 -39978312 - L1PA8 LINE L1 -2 6170 5478 2099 85 32 3 chrY 11535272 11535554 -39978030 - AluY SINE Alu -21 290 1 6155 102 17 2 chrY 11535554 11536122 -39977462 - L1PA8 LINE L1 -694 5478 4920 21137 161 15 20 chrY 11536123 11540622 -39972962 - L1M2 LINE L1 -1151 5697 1178 918 215 187 24 chrY 11540646 11541097 -39972487 + LTR61 LTR ERV1 16 595 0 4530 240 24 44 chrY 11541097 11542301 -39971283 - L1M2 LINE L1 -5668 1181 2 814 216 93 0 chrY 11542424 11542628 -39970956 - L1M2 LINE L1 -6242 607 385 29 28 0 0 chrY 11542683 11542719 -39970865 + AT_rich Low_complexity Low_complexity 1 36 0 1941 155 19 7 chrY 11543741 11544050 -39969534 + AluSq SINE Alu 1 313 0 1331 205 13 0 chrY 11544166 11544400 -39969184 + AluJo SINE Alu 1 237 -75 36 23 0 0 chrY 11544402 11544445 -39969139 + AT_rich Low_complexity Low_complexity 1 43 0 1183 177 58 13 chrY 11544619 11544845 -39968739 - AluJo SINE Alu -19 293 58 1108 252 0 0 chrY 11544911 11545149 -39968435 - AluJb SINE Alu -74 238 1 3748 75 21 0 chrY 11545168 11545648 -39967936 - LTR2B LTR ERV1 0 490 1 1291 150 5 0 chrY 11545852 11546065 -39967519 + L1P3 LINE L1 5 218 -6243 3544 120 21 7 chrY 11546066 11546684 -39966900 + L1P LINE L1 2518 3144 -3002 400 176 0 0 chrY 11546688 11546762 -39966822 + L1P LINE L1 4227 4300 -1846 618 298 51 28 chrY 11546814 11547069 -39966515 - MLT2F LTR ERVL -217 446 186 1627 151 0 75 chrY 11547436 11547515 -39966069 + MER41B LTR ERV1 315 398 -237 2381 94 7 0 chrY 11547515 11547823 -39965761 - AluSp SINE Alu -3 310 1 1627 151 0 75 chrY 11547823 11548088 -39965496 + MER41B LTR ERV1 398 633 -2 568 254 0 0 chrY 11548147 11548257 -39965327 - FLAM_A SINE Alu -30 112 3 437 178 0 0 chrY 11548816 11548889 -39964695 - MSTC LTR MaLR -173 255 183 997 153 0 0 chrY 11548895 11549045 -39964539 + AluSg/x SINE Alu 156 305 -7 802 217 33 0 chrY 11549045 11549229 -39964355 - MSTC LTR MaLR -238 190 1 2705 265 85 76 chrY 11549267 11550849 -39962735 - MSTC-int LTR MaLR -25 1710 33 1261 240 149 13 chrY 11550882 11551257 -39962327 - MSTC LTR MaLR 0 428 3 1861 137 14 11 chrY 11551448 11551726 -39961858 + AluSq SINE Alu 2 280 -33 189 0 0 0 chrY 11551726 11551747 -39961837 + (CAAAA)n Simple_repeat Simple_repeat 4 24 0 198 103 0 0 chrY 11551807 11551836 -39961748 + (TA)n Simple_repeat Simple_repeat 1 29 0 310 219 0 0 chrY 11551843 11551907 -39961677 - L1MC4 LINE L1 -1339 6703 6640 1909 149 0 3 chrY 11551920 11552209 -39961375 + AluSq SINE Alu 1 288 -25 593 258 127 27 chrY 11552469 11552729 -39960855 + L1M4 LINE L1 3916 4201 -1945 819 205 82 0 chrY 11552741 11552936 -39960648 + L1M2 LINE L1 5351 5561 -730 4621 267 54 22 chrY 11552952 11554445 -39959139 + L1PBa LINE L1 3 1543 -5320 198 350 136 0 chrY 11654669 11654772 -39858812 + L2 LINE L2 3109 3225 -47 2064 119 20 0 chrY 11655013 11655307 -39858277 + AluSc SINE Alu 1 300 -9 945 183 24 0 chrY 11655316 11655485 -39858099 + FAM SINE Alu 1 173 -2 2063 131 6 29 chrY 11656194 11656537 -39857047 - MER1B DNA MER1_type -2 335 1 1731 130 54 11 chrY 11656929 11657206 -39856378 - AluSg SINE Alu -21 289 1 1653 224 57 28 chrY 11657207 11657702 -39855882 - L1M4 LINE L1 -1669 4477 3969 221 83 28 0 chrY 11657702 11657738 -39855846 + (TCCCC)n Simple_repeat Simple_repeat 5 41 0 2521 74 0 6 chrY 11657747 11658059 -39855525 - AluY SINE Alu -1 310 1 1534 153 12 20 chrY 11658087 11658335 -39855249 - AluJo SINE Alu -66 246 1 891 225 71 55 chrY 11658336 11658647 -39854937 - L1M4 LINE L1 -2358 3788 3473 252 0 0 0 chrY 11658690 11658718 -39854866 + (TA)n Simple_repeat Simple_repeat 1 28 0 266 234 40 57 chrY 11658757 11658881 -39854703 - AluSc SINE Alu -29 270 149 309 287 57 51 chrY 11659372 11659570 -39854014 + MIR SINE MIR 2 191 -63 964 202 0 0 chrY 11660122 11660290 -39853294 + AluJb SINE Alu 134 301 -11 2290 72 0 39 chrY 11660820 11661127 -39852457 + AluY SINE Alu 1 295 -16 252 0 0 0 chrY 11662161 11662189 -39851395 + (A)n Simple_repeat Simple_repeat 1 28 0 444 19 0 0 chrY 11662248 11662301 -39851283 + (TG)n Simple_repeat Simple_repeat 2 54 0 198 0 0 0 chrY 11664271 11664293 -39849291 + (TTTTTG)n Simple_repeat Simple_repeat 3 24 0 604 163 141 22 chrY 11666108 11666243 -39847341 + L1MD2 LINE L1 6207 6357 -2 1548 184 88 0 chrY 11666338 11666658 -39846926 - MER7A DNA MER2_type 0 346 1 1533 176 3 50 chrY 11666937 11667260 -39846324 + AluJb SINE Alu 1 308 -4 1606 93 42 13 chrY 11667733 11667969 -39845615 + AluSq SINE Alu 1 243 -70 184 260 0 0 chrY 11669339 11669389 -39844195 - L2 LINE L2 -6 3266 3217 200 224 104 30 chrY 11669392 11669427 -39844157 + MIR SINE MIR 72 103 -105 2415 75 0 0 chrY 11669427 11669722 -39843862 - AluSc SINE Alu -14 295 1 200 224 104 30 chrY 11669722 11669753 -39843831 + MIR SINE MIR 103 143 -65 851 142 54 14 chrY 11669962 11670110 -39843474 + FRAM SINE Alu 1 154 -22 379 323 145 0 chrY 11670310 11670592 -39842992 + L1MC4a LINE L1 5273 5595 -2213 903 205 0 6 chrY 11670594 11670760 -39842824 + FRAM SINE Alu 1 159 -17 2108 132 0 0 chrY 11670768 11671055 -39842529 + AluSx SINE Alu 1 287 -25 318 267 148 5 chrY 11671133 11671343 -39842241 + L1MC4a LINE L1 5672 5911 -1897 858 123 0 0 chrY 11671378 11671500 -39842084 + L1M2 LINE L1 3 124 -6725 433 326 158 20 chrY 11671646 11671950 -39841634 - L3 LINE CR1 -896 681 336 480 129 439 0 chrY 11674948 11675026 -39838558 + MER3 DNA MER1_type 20 63 -146 2349 101 3 0 chrY 11675026 11675334 -39838250 - AluSq SINE Alu -4 309 1 480 129 439 0 chrY 11675334 11675387 -39838197 + MER3 DNA MER1_type 63 209 0 230 192 19 0 chrY 11675426 11675478 -39838106 + L2 LINE L2 3261 3313 0 351 0 0 0 chrY 11676316 11676355 -39837229 + (A)n Simple_repeat Simple_repeat 1 39 0 281 250 50 25 chrY 11676764 11676844 -39836740 - L2 LINE L2 -38 3234 3153 455 245 122 0 chrY 11677652 11677799 -39835785 - MER104 DNA Tc2 -15 165 1 299 286 15 53 chrY 11677869 11678002 -39835582 - MIR SINE MIR -72 190 63 224 350 79 20 chrY 11678866 11679069 -39834515 + L3b LINE CR1 1117 1331 -252 1797 295 123 25 chrY 11679502 11680547 -39833037 + L2 LINE L2 1587 2734 -580 367 247 89 100 chrY 11680908 11681426 -39832158 + L1MEd LINE L1 686 1197 -4922 2442 41 49 8 chrY 11681484 11681849 -39831735 - L1PA4 LINE L1 0 6155 5776 2388 228 86 30 chrY 11681949 11682077 -39831507 - L2 LINE L2 -838 2476 2357 2195 114 7 7 chrY 11682077 11682383 -39831201 - AluSx SINE Alu -6 306 1 2388 228 86 30 chrY 11682383 11683025 -39830559 - L2 LINE L2 -957 2357 1663 467 221 93 83 chrY 11683093 11683366 -39830218 + MLT1J2 LTR MaLR 85 370 -55 698 142 13 184 chrY 11683366 11683599 -39829985 + 7SK RNA RNA 1 193 0 467 221 93 83 chrY 11683599 11683648 -39829936 + MLT1J2 LTR MaLR 370 417 -8 336 219 124 0 chrY 11683655 11683760 -39829824 - L2 LINE L2 -1648 1666 1549 215 191 21 0 chrY 11683779 11683826 -39829758 + MIR3 SINE MIR 127 174 -34 235 333 111 7 chrY 11687673 11687826 -39825758 + L3b LINE CR1 1276 1444 -139 225 132 0 0 chrY 11687839 11687877 -39825707 + (TG)n Simple_repeat Simple_repeat 1 38 0 541 288 31 31 chrY 11688530 11688752 -39824832 + L3 LINE CR1 1308 1529 -48 1291 194 12 10 chrY 11690117 11690415 -39823169 - L1MB2 LINE L1 -34 6134 5846 465 331 115 13 chrY 11691573 11691887 -39821697 + L2 LINE L2 2967 3312 -1 697 297 84 7 chrY 11691889 11692185 -39821399 + L2 LINE L2 2994 3312 -1 1223 254 56 21 chrY 11692453 11692831 -39820753 - L1MC4 LINE L1 -130 7912 7522 393 219 66 147 chrY 11692890 11693318 -39820266 - L1MC4a LINE L1 -1558 6250 5868 2204 108 3 34 chrY 11693318 11693641 -39819943 + AluSp SINE Alu 1 313 0 393 219 66 147 chrY 11693641 11693724 -39819860 - L1MC4a LINE L1 -1940 5868 5780 1782 171 43 29 chrY 11693831 11694182 -39819402 + MLT1B LTR MaLR 33 388 -2 312 252 114 48 chrY 11695734 11695944 -39817640 - L1ME4a LINE L1 -2 6119 5896 302 265 115 70 chrY 11695993 11696193 -39817391 - L1MC4 LINE L1 -312 7730 7522 1955 138 3 3 chrY 11698479 11698775 -39814809 + AluJb SINE Alu 1 296 -16 2387 53 7 20 chrY 11699115 11699418 -39814166 + AluY SINE Alu 1 299 -12 631 281 157 38 chrY 11700376 11700846 -39812738 - L1ME4a LINE L1 -2028 5780 5255 3560 172 19 61 chrY 11701245 11702014 -39811570 - L1MB7 LINE L1 -19 6165 5429 186 133 0 0 chrY 11702269 11702299 -39811285 + (GA)n Simple_repeat Simple_repeat 1 30 0 197 255 31 93 chrY 11702701 11702855 -39810729 - MIR SINE MIR -76 186 43 34 79 0 0 chrY 11703489 11703565 -39810019 + AT_rich Low_complexity Low_complexity 1 76 0 915 139 0 0 chrY 11703855 11703984 -39809600 + FLAM_C SINE Alu 2 130 -3 1495 196 39 6 chrY 11705979 11706291 -39807293 + MER33 DNA MER1_type 3 324 0 2072 136 3 0 chrY 11706653 11706954 -39806630 + AluSx SINE Alu 1 302 -10 1591 133 39 142 chrY 11706961 11707298 -39806286 + AluJb SINE Alu 1 302 0 1643 214 74 53 chrY 11707453 11707911 -39805673 - MLT1F LTR MaLR -9 533 60 406 283 80 0 chrY 11707973 11708086 -39805498 - MIR SINE MIR -62 146 25 207 69 0 0 chrY 11708969 11708998 -39804586 + (TG)n Simple_repeat Simple_repeat 2 30 0 1999 141 7 3 chrY 11709120 11709410 -39804174 + AluSx SINE Alu 1 291 -21 653 249 122 5 chrY 11709416 11709637 -39803947 - MIR SINE MIR -3 259 13 186 43 0 0 chrY 11710213 11710236 -39803348 + (TTG)n Simple_repeat Simple_repeat 2 24 0 459 244 108 131 chrY 11710419 11710507 -39803077 + L2 LINE L2 2926 3015 -257 872 150 0 0 chrY 11710507 11710627 -39802957 + FLAM_C SINE Alu 1 120 -13 459 244 108 131 chrY 11710627 11710882 -39802702 + L2 LINE L2 3015 3261 -11 24 77 0 0 chrY 11711920 11711972 -39801612 + AT_rich Low_complexity Low_complexity 1 52 0 2211 117 7 3 chrY 11712270 11712569 -39801015 - AluSx SINE Alu -12 300 1 1787 148 6 46 chrY 11712919 11713243 -39800341 - AluJb SINE Alu -1 311 1 2530 132 40 2 chrY 11713244 11713639 -39799945 - L1MC1 LINE L1 -10 6323 5914 306 39 58 0 chrY 11714959 11715011 -39798573 + (TA)n Simple_repeat Simple_repeat 2 56 0 234 0 0 0 chrY 11715329 11715355 -39798229 + (TTTTTG)n Simple_repeat Simple_repeat 3 28 0 818 277 73 108 chrY 11716495 11716707 -39796877 - L1MC1 LINE L1 -831 5315 5097 2131 113 0 0 chrY 11716707 11716998 -39796586 - AluY SINE Alu -20 291 1 818 277 73 108 chrY 11716998 11718906 -39794678 - L1MC1 LINE L1 -1049 5097 3714 269 297 42 42 chrY 11719020 11719350 -39794234 - L1MC1 LINE L1 -2845 3301 2972 1719 152 19 39 chrY 11719503 11719813 -39793771 - AluJb SINE Alu -8 304 1 783 297 14 40 chrY 11720164 11720460 -39793124 - L2 LINE L2 -656 2658 2371 981 162 60 5 chrY 11720512 11720697 -39792887 + MSTD LTR MaLR 1 195 -201 353 134 0 15 chrY 11720787 11720854 -39792730 + (TCCC)n Simple_repeat Simple_repeat 3 68 0 298 206 0 15 chrY 11720854 11720922 -39792662 + MSTD LTR MaLR 391 457 0 568 328 83 28 chrY 11720977 11721303 -39792281 + L2 LINE L2 2914 3257 -15 * 1988 259 109 34 chrY 11721302 11722347 -39791237 - L2 LINE L2 -1 3312 2170 279 239 161 71 chrY 11723560 11723715 -39789869 - L2 LINE L2 0 3272 3104 194 244 160 34 chrY 11723867 11723986 -39789598 + L3 LINE CR1 1218 1351 -226 2039 95 37 0 chrY 11724236 11724536 -39789048 - AluSq SINE Alu 0 310 1 1676 170 0 0 chrY 11725432 11725703 -39787881 - AluJo SINE Alu -1 311 41 22 0 0 0 chrY 11725994 11726016 -39787568 + AT_rich Low_complexity Low_complexity 1 22 0 299 306 109 14 chrY 11726164 11726311 -39787273 + MIR SINE MIR 49 209 -53 722 296 110 44 chrY 11726440 11726758 -39786826 - L2 LINE L2 0 3313 2975 6182 189 62 24 chrY 11726770 11728092 -39785492 + Charlie1a DNA MER1_type 15 1394 -1367 2182 94 0 7 chrY 11728092 11728369 -39785215 - AluSx SINE Alu -17 295 21 6182 189 62 24 chrY 11728369 11728429 -39785155 + Charlie1a DNA MER1_type 1394 1450 -5 245 238 88 88 chrY 11728458 11728639 -39784945 - L1MDa LINE L1 -1687 4528 4348 981 260 113 30 chrY 11728654 11728683 -39784901 - L1MDa LINE L1 -2887 3328 3303 1038 244 23 5 chrY 11728683 11728900 -39784684 + MER58A DNA MER1_type 4 224 0 981 260 113 30 chrY 11728900 11729074 -39784510 - L1MDa LINE L1 -2912 3303 3145 423 62 0 31 chrY 11729074 11729139 -39784445 + L1PA8 LINE L1 6110 6172 0 981 260 113 30 chrY 11729139 11729500 -39784084 - L1MDa LINE L1 -3070 3145 2716 259 283 130 7 chrY 11729637 11729705 -39783879 - L1MDa LINE L1 -3698 2517 2459 2080 132 0 16 chrY 11729705 11729728 -39783856 - AluSx SINE Alu -6 306 284 186 43 0 0 chrY 11729728 11729751 -39783833 + (TCTA)n Simple_repeat Simple_repeat 4 26 0 2080 132 0 16 chrY 11729751 11730038 -39783546 - AluSx SINE Alu -28 284 1 259 283 130 7 chrY 11730038 11730107 -39783477 - L1MDa LINE L1 -3756 2459 2363 385 284 54 54 chrY 11730114 11730318 -39783266 - L1MDa LINE L1 -4038 2358 2155 646 289 85 47 chrY 11730495 11730596 -39782988 - L1MDa LINE L1 -4549 1666 1570 1575 207 13 10 chrY 11730596 11730896 -39782688 - AluJo SINE Alu -11 301 1 646 289 85 47 chrY 11730896 11731288 -39782296 - L1MDa LINE L1 -4645 1570 1311 45255 39 1 1 chrY 11731299 11737017 -39776567 + L1P2 LINE L1 2 5716 -439 227 306 0 14 chrY 11736957 11737029 -39776555 - L1P2 LINE L1 -434 5720 5650 * 1788 109 10 33 chrY 11737141 11737444 -39776140 - AluSx SINE Alu -16 296 1 243 293 104 73 chrY 11737994 11738158 -39775426 + L2 LINE L2 3103 3271 -1 246 81 0 0 chrY 11738787 11738824 -39774760 + (T)n Simple_repeat Simple_repeat 1 37 0 210 147 29 0 chrY 11741894 11741928 -39771656 - MIR SINE MIR -6 256 222 877 247 87 4 chrY 11743061 11743292 -39770292 - MIR SINE MIR -5 257 8 902 168 119 5 chrY 11743759 11743944 -39769640 + MLT1D LTR MaLR 1 206 -299 786 173 15 15 chrY 11744205 11744338 -39769246 - FLAM_A SINE Alu 0 133 1 2230 97 10 7 chrY 11744342 11744650 -39768934 - AluSq SINE Alu -4 309 1 418 301 74 81 chrY 11745300 11745522 -39768062 + L2 LINE L2 2855 3074 -198 2513 102 16 38 chrY 11745522 11745894 -39767690 + THE1B LTR MaLR 1 364 0 418 301 74 81 chrY 11745894 11746090 -39767494 + L2 LINE L2 3074 3270 -2 2389 79 3 7 chrY 11748105 11748408 -39765176 + AluSp SINE Alu 2 303 -10 2123 146 0 0 chrY 11748428 11748730 -39764854 - AluSx SINE Alu -10 302 1 711 161 0 9 chrY 11750477 11750589 -39762995 + FLAM_C SINE Alu 21 131 -12 378 283 62 0 chrY 11751747 11751860 -39761724 + L3 LINE CR1 1211 1330 -247 2125 122 3 7 chrY 11752271 11752567 -39761017 + AluSx SINE Alu 1 295 -17 1099 126 45 93 chrY 11752982 11753228 -39760356 - L1MB2 LINE L1 -2 6169 5936 3970 174 18 41 chrY 11753235 11753863 -39759721 - L1MB2 LINE L1 0 6155 5567 1768 188 13 0 chrY 11753863 11754171 -39759413 + AluJb SINE Alu 1 312 0 3970 174 18 41 chrY 11754171 11754708 -39758876 - L1MB2 LINE L1 -588 5567 5019 389 256 101 8 chrY 11757055 11757184 -39756400 + MIR3 SINE MIR 3 143 -65 638 219 26 31 chrY 11757192 11757384 -39756200 - LTR33A LTR ERVL -17 506 316 242 258 116 58 chrY 11757482 11757707 -39755877 - LTR50 LTR ERVL -557 238 1 300 313 15 15 chrY 11758066 11758197 -39755387 - ERVL LTR ERVL -3970 1794 1664 396 0 0 0 chrY 11758305 11758349 -39755235 + (TG)n Simple_repeat Simple_repeat 1 44 0 976 184 46 23 chrY 11758374 11758548 -39755036 + MER45A DNA AcHobo 1 178 0 226 323 71 0 chrY 11758554 11758653 -39754931 - L2 LINE L2 -222 3091 2986 * 267 298 71 90 chrY 11758650 11758905 -39754679 + L2 LINE L2 2963 3212 -60 508 210 7 116 chrY 11758953 11759091 -39754493 - MIR SINE MIR -93 169 47 969 143 0 0 chrY 11759166 11759299 -39754285 + FLAM_C SINE Alu 1 133 0 1576 204 4 11 chrY 11759609 11759889 -39753695 + AluJb SINE Alu 3 280 -32 23 0 0 0 chrY 11759891 11759914 -39753670 + AT_rich Low_complexity Low_complexity 1 23 0 917 153 0 0 chrY 11759917 11760048 -39753536 + FLAM_C SINE Alu 1 131 -2 188 317 49 0 chrY 11761392 11761474 -39752110 - L3 LINE CR1 -505 1072 987 388 300 57 14 chrY 11762217 11762357 -39751227 + MIR SINE MIR 36 181 -81 187 256 23 0 chrY 11762357 11762400 -39751184 + L2 LINE L2 3217 3260 -12 1525 51 22 0 chrY 11762959 11763137 -39750447 + L1PA3 LINE L1 5974 6155 0 231 377 41 25 chrY 11763752 11763874 -39749710 - L2 LINE L2 -13 3259 3136 2091 107 7 7 chrY 11765387 11765677 -39747907 - AluSc SINE Alu -19 290 1 1589 166 13 26 chrY 11765677 11765984 -39747600 - AluJo SINE Alu -9 303 1 3661 238 57 36 chrY 11765987 11767589 -39745995 - L1MEc LINE L1 -2780 3435 1829 5230 236 65 28 chrY 11767590 11768144 -39745440 - L1MEc LINE L1 -4683 1713 1181 1700 157 89 7 chrY 11768144 11768425 -39745159 - AluSx SINE Alu -8 304 1 5230 236 65 28 chrY 11768425 11769489 -39744095 - L1MEc LINE L1 -5215 1181 36 403 339 38 21 chrY 11770279 11770465 -39743119 + MIR3 SINE MIR 17 205 -3 2326 143 82 12 chrY 11771156 11771556 -39742028 + MSTC LTR MaLR 1 428 0 207 125 0 0 chrY 11772194 11772234 -39741350 + (A)n Simple_repeat Simple_repeat 1 40 0 2232 115 0 0 chrY 11773206 11773493 -39740091 + AluSx SINE Alu 1 287 -25 1114 272 42 26 chrY 11773689 11774071 -39739513 + L1ME3A LINE L1 5560 5947 -223 2712 102 58 17 chrY 11774100 11774511 -39739073 + MSTA LTR MaLR 1 428 0 1694 182 60 12 chrY 11774511 11774851 -39738733 + MLT1A1 LTR MaLR 9 365 0 353 279 142 33 chrY 11774862 11775045 -39738539 + L1ME3A LINE L1 5941 6143 -27 255 278 211 0 chrY 11775409 11775499 -39738085 + MIR3 SINE MIR 97 205 -3 249 308 187 39 chrY 11778584 11778766 -39734818 + MIR SINE MIR 53 261 -1 257 284 156 0 chrY 11779420 11779529 -39734055 + MIR SINE MIR 13 138 -124 745 264 16 16 chrY 11779646 11779828 -39733756 + MIR SINE MIR 7 188 -74 247 284 80 11 chrY 11780150 11780238 -39733346 + MIR SINE MIR 56 149 -113 546 284 87 31 chrY 11780278 11780567 -39733017 + L2 LINE L2 2988 3292 -21 19424 31 2 0 chrY 11781313 11784271 -39729313 + L1PA4 LINE L1 3194 6155 0 306 342 25 25 chrY 11786632 11786790 -39726794 - MIR3 SINE MIR -18 190 33 433 264 40 30 chrY 11787373 11787574 -39726010 - L1MC4 LINE L1 -4 8038 7836 924 226 54 21 chrY 11787622 11787901 -39725683 - L1ME2 LINE L1 -10 6154 5867 2445 148 38 49 chrY 11788569 11789041 -39724543 + MLT1C LTR MaLR 1 467 0 1086 231 87 13 chrY 11789085 11789396 -39724188 - L1ME3A LINE L1 -17 6153 5820 2002 122 11 11 chrY 11789662 11789949 -39723635 + AluSg SINE Alu 3 289 -21 2127 127 3 0 chrY 11789979 11790279 -39723305 - AluSx SINE Alu -11 301 1 998 184 87 0 chrY 11790281 11790488 -39723096 + L1ME1 LINE L1 4475 4699 -1447 824 193 17 28 chrY 11790531 11790641 -39722943 + AluJb SINE Alu 1 111 -201 432 37 0 0 chrY 11790641 11790695 -39722889 + (CA)n Simple_repeat Simple_repeat 1 54 0 2069 104 4 0 chrY 11790697 11790966 -39722618 - AluSg SINE Alu -19 291 22 824 193 17 28 chrY 11790966 11791028 -39722556 + AluJb SINE Alu 112 174 -138 232 179 179 45 chrY 11791028 11791114 -39722470 + AluJ/FRAM SINE Alu 222 302 0 3748 201 63 14 chrY 11791217 11792538 -39721046 + L1ME1 LINE L1 4786 6334 0 2250 113 0 3 chrY 11792663 11792965 -39720619 + AluSq SINE Alu 1 301 -12 300 27 0 0 chrY 11793732 11793769 -39719815 + (TTTC)n Simple_repeat Simple_repeat 1 37 0 319 333 49 10 chrY 11794827 11794929 -39718655 - MER91C DNA MER1_type -2 138 33 338 272 9 44 chrY 11795022 11795136 -39718448 - MER102a DNA MER1_type 0 330 221 864 146 0 0 chrY 11795162 11795285 -39718299 + FLAM_A SINE Alu 1 123 -10 1927 104 0 4 chrY 11795292 11795543 -39718041 + AluSg SINE Alu 39 288 -22 26 0 0 0 chrY 11795543 11795569 -39718015 + AT_rich Low_complexity Low_complexity 1 26 0 1781 178 0 7 chrY 11795710 11796013 -39717571 + AluJo SINE Alu 1 301 -11 466 187 0 0 chrY 11796391 11796466 -39717118 - FLAM SINE Alu -21 122 48 275 242 108 33 chrY 11798437 11798557 -39715027 + L3b LINE CR1 1368 1496 -87 195 280 0 0 chrY 11798948 11798998 -39714586 + MIR SINE MIR 83 132 -76 792 272 246 14 chrY 11799005 11799483 -39714101 - L2 LINE L2 0 3313 2737 332 215 0 0 chrY 11802550 11802615 -39710969 + MLT1H LTR MaLR 263 327 -222 819 214 114 15 chrY 11802641 11802842 -39710742 - MER58A DNA MER1_type -2 222 2 523 134 31 118 chrY 11802859 11802986 -39710598 + MLT1H LTR MaLR 431 546 -3 335 354 82 6 chrY 11803252 11803410 -39710174 + L2 LINE L2 3103 3272 0 196 350 45 23 chrY 11804395 11804572 -39709012 - L2 LINE L2 -264 3008 2828 181 318 34 45 chrY 11804901 11804989 -39708595 - L2 LINE L2 0 3272 3186 240 257 54 68 chrY 11805072 11805146 -39708438 + L2 LINE L2 3191 3263 -9 471 242 0 0 chrY 11805149 11805240 -39708344 - L2 LINE L2 0 3313 3223 217 283 71 26 chrY 11805485 11805598 -39707986 - L2 LINE L2 -4 3309 3192 180 209 15 60 chrY 11806007 11806074 -39707510 - L2 LINE L2 -3140 174 111 223 241 17 0 chrY 11806199 11806257 -39707327 + CT-rich Low_complexity Low_complexity 2 60 0 220 150 25 88 chrY 11806997 11807077 -39706507 + GA-rich Low_complexity Low_complexity 3 77 0 233 274 53 62 chrY 11807251 11807364 -39706220 - MIR SINE MIR -32 230 119 705 306 128 20 chrY 11807792 11808191 -39705393 - L3 LINE CR1 -32 1545 1104 813 197 11 44 chrY 11808192 11808375 -39705209 - FRAM SINE Alu 0 176 1 379 322 91 7 chrY 11808376 11808519 -39705065 - L3 LINE CR1 -466 1111 957 308 304 78 37 chrY 11808583 11808774 -39704810 - L2 LINE L2 -165 3107 2909 2370 121 74 2 chrY 11808879 11809283 -39704301 - Tigger2 DNA MER2_type -5 2713 2281 433 127 0 0 chrY 11809290 11809353 -39704231 - Tigger2 DNA MER2_type -2655 63 1 389 232 81 85 chrY 11815886 11816097 -39697487 - MIR SINE MIR -52 210 1 375 191 51 51 chrY 11819809 11819966 -39693618 + L1ME4a LINE L1 5965 6121 0 3296 137 21 21 chrY 11823039 11823643 -39689941 - L1MB3 LINE L1 -7 6176 5573 409 193 18 28 chrY 11823652 11823761 -39689823 - L1MC2 LINE L1 0 6344 6237 188 333 0 0 chrY 11823985 11824042 -39689542 - MIR3 SINE MIR -16 192 136 2601 89 31 31 chrY 11824964 11825378 -39688206 - L1MA1 LINE L1 0 6302 5889 1037 183 16 0 chrY 11825828 11826014 -39687570 + MER5A DNA MER1_type 1 189 0 340 200 93 50 chrY 11826825 11826950 -39686634 - L1ME4a LINE L1 -2 6119 5986 871 221 80 55 chrY 11826950 11827276 -39686308 - MER46C DNA MER2_type -2 336 3 340 200 93 50 chrY 11827276 11827290 -39686294 - L1ME4a LINE L1 -135 5986 5974 506 277 118 33 chrY 11827353 11827682 -39685902 - L1ME4a LINE L1 -252 5869 5513 183 219 141 16 chrY 11827790 11827854 -39685730 + L3b LINE CR1 1271 1342 -241 35 0 0 0 chrY 11829504 11829539 -39684045 + AT_rich Low_complexity Low_complexity 1 35 0 414 280 227 0 chrY 11829936 11830068 -39683516 + MIR3 SINE MIR 16 177 -31 1012 189 35 0 chrY 11830640 11830841 -39682743 + MER3 DNA MER1_type 2 209 0 241 308 29 39 chrY 11830918 11831022 -39682562 - L2 LINE L2 -6 3266 3164 10330 225 46 31 chrY 11931510 11933522 -39580062 + L1PB2 LINE L1 1 1982 -4226 2194 111 0 10 chrY 11933522 11933828 -39579756 - AluY SINE Alu -6 305 3 10330 225 46 31 chrY 11933828 11938191 -39575393 + L1PB2 LINE L1 1982 6206 -2 1959 179 114 65 chrY 11938755 11939089 -39574495 + L1MA8 LINE L1 5596 5912 -379 1831 136 3 65 chrY 11939089 11939222 -39574362 + AluSx SINE Alu 3 143 -169 2124 105 3 33 chrY 11939222 11939527 -39574057 + AluSg SINE Alu 1 296 -14 1831 136 3 65 chrY 11939527 11939701 -39573883 + AluSx SINE Alu 143 291 -21 1959 179 114 65 chrY 11939701 11940026 -39573558 + L1MA8 LINE L1 5912 6287 -4 24 41 0 20 chrY 11940063 11940090 -39573494 + AT_rich Low_complexity Low_complexity 1 28 -20 1971 134 3 10 chrY 11940090 11940382 -39573202 - AluSc SINE Alu -19 290 1 24 41 0 20 chrY 11940382 11940403 -39573181 + AT_rich Low_complexity Low_complexity 28 48 0 1071 265 67 2 chrY 11940454 11940899 -39572685 + L1M4 LINE L1 3897 4370 -1776 1837 244 63 120 chrY 11940918 11942387 -39571197 + L1M3e LINE L1 460 1844 -5645 775 277 156 16 chrY 11942383 11943068 -39570516 + L1M3e LINE L1 2894 3674 -3891 * 278 175 62 25 chrY 11943117 11943197 -39570387 - MER65A LTR ERV1 -83 362 280 279 0 0 0 chrY 11943201 11943232 -39570352 + (TTTA)n Simple_repeat Simple_repeat 2 32 0 21276 62 9 4 chrY 11943232 11946831 -39566753 - L1PA5 LINE L1 -12 6142 2530 15108 129 8 4 chrY 11946832 11949223 -39564361 - L1PA5 LINE L1 -3736 2410 11 1184 206 21 18 chrY 11949231 11949517 -39564067 - MER65A LTR ERV1 -158 287 1 1690 267 42 2 chrY 11949519 11950118 -39563466 + L1M3e LINE L1 3679 4301 -3264 227 138 73 55 chrY 11950138 11950247 -39563337 + L1M3e LINE L1 4579 4689 -2876 761 311 60 8 chrY 11950254 11950624 -39562960 + L1PA12 LINE L1 2 390 -7191 225 350 10 10 chrY 11951368 11951471 -39562113 + L1M2 LINE L1 964 1066 -5783 2337 163 29 23 chrY 11952111 11952812 -39560772 + L1PA12 LINE L1 2131 2984 -4600 39891 43 22 3 chrY 11952812 11958852 -39554732 + L1PA3 LINE L1 4 6155 0 2203 202 82 12 chrY 11958906 11959500 -39554084 + L1PA12 LINE L1 2960 3595 -3989 307 125 156 0 chrY 11959535 11959599 -39553985 + THE1-int LTR MaLR 489 562 -1018 31 26 0 0 chrY 11959613 11959651 -39553933 + AT_rich Low_complexity Low_complexity 1 38 0 26985 130 17 57 chrY 11959664 11966060 -39547524 - L1PA7 LINE L1 -13 6141 12 1741 258 73 34 chrY 11966076 11966703 -39546881 + L1PA12 LINE L1 3569 4239 -3345 2443 128 8 13 chrY 11966703 11967077 -39546507 - THE1C LTR MaLR 0 375 4 1741 258 73 34 chrY 11967077 11967285 -39546299 + L1PA12 LINE L1 4239 4437 -3147 1525 131 25 29 chrY 11967375 11967650 -39545934 + THE1C LTR MaLR 81 354 -21 2815 255 174 7 chrY 11967672 11968520 -39545064 + L1PA13 LINE L1 58 1047 -5740 5225 206 23 16 chrY 11968522 11969624 -39543960 + L1PA13 LINE L1 1085 2193 -4594 1933 122 0 0 chrY 11969635 11969890 -39543694 - AluSg SINE Alu -55 255 1 11220 233 19 33 chrY 11969895 11970335 -39543249 + L1PA13 LINE L1 2484 2929 -3868 225 0 0 0 chrY 11970335 11970360 -39543224 + (TTA)n Simple_repeat Simple_repeat 3 27 0 3539 22 5 0 chrY 11970360 11970773 -39542811 - L1PA3 LINE L1 -18 6137 5723 11220 233 19 33 chrY 11970773 11972778 -39540806 + L1PA13 LINE L1 2928 4867 -1930 3722 151 23 97 chrY 11972778 11973635 -39539949 - LTR25 LTR ERV1 0 794 1 11220 233 19 33 chrY 11973635 11974629 -39538955 + L1PA13 LINE L1 4867 5874 -923 1867 168 3 0 chrY 11974669 11974955 -39538629 + AluSx SINE Alu 1 287 -25 213 39 0 0 chrY 11974956 11974982 -39538602 + (TA)n Simple_repeat Simple_repeat 1 26 0 362 255 0 21 chrY 11975021 11975115 -39538469 - L1MC4 LINE L1 -1339 6703 6612 302 153 17 0 chrY 11975115 11975174 -39538410 + (TA)n Simple_repeat Simple_repeat 1 60 0 256 59 0 0 chrY 11975174 11975208 -39538376 + (CA)n Simple_repeat Simple_repeat 1 34 0 2104 255 55 49 chrY 11975285 11976314 -39537270 - L1M4 LINE L1 -1197 4949 3914 634 178 15 44 chrY 11976722 11976857 -39536727 + FLAM_C SINE Alu 2 132 -1 1987 159 0 0 chrY 11977117 11977406 -39536178 - AluSc SINE Alu -20 289 1 1949 163 0 0 chrY 11977780 11978080 -39535504 + AluSg SINE Alu 1 300 -10 806 262 93 54 chrY 11978183 11978592 -39534992 + MLT1D LTR MaLR 81 505 0 3951 174 39 8 chrY 11978594 11980102 -39533482 - L1M1 LINE L1 -507 5797 2989 3578 184 35 57 chrY 11980102 11980716 -39532868 + LTR25 LTR ERV1 1 595 -199 1963 130 0 14 chrY 11980716 11981030 -39532554 + AluSc SINE Alu 1 310 0 3578 184 35 57 chrY 11981030 11981226 -39532358 + LTR25 LTR ERV1 595 794 0 315 154 77 0 chrY 11981226 11981291 -39532293 + LTR25-int LTR ERV1 13 82 -6914 595 230 24 85 chrY 11981621 11981869 -39531715 + LTR12 LTR ERV1 231 463 -251 19821 189 41 54 chrY 11981890 11982537 -39531047 + LTR25-int LTR ERV1 268 922 -6074 1898 151 0 7 chrY 11982537 11982857 -39530727 - AluY SINE Alu 0 311 3 19821 189 41 54 chrY 11982857 11986591 -39526993 + LTR25-int LTR ERV1 922 4535 -2461 2347 92 0 13 chrY 11986591 11986896 -39526688 + AluY SINE Alu 1 301 -10 19821 189 41 54 chrY 11986896 11988062 -39525522 + LTR25-int LTR ERV1 4535 5715 -1281 40158 38 23 1 chrY 11988066 11994086 -39519498 - L1PA2 LINE L1 0 6155 4 5265 176 13 37 chrY 11994086 11994138 -39519446 + LTR25-int LTR ERV1 2934 2986 -4010 2106 138 0 3 chrY 11994138 11994435 -39519149 + AluSg SINE Alu 1 296 -14 5265 176 13 37 chrY 11994435 11995711 -39517873 + LTR25-int LTR ERV1 2986 6946 -50 3583 173 29 51 chrY 11995712 11996481 -39517103 + LTR25 LTR ERV1 20 771 -23 2156 255 37 4 chrY 11996481 11997191 -39516393 - L1M1 LINE L1 -3190 2956 2224 3459 221 43 10 chrY 11997284 11999015 -39514569 - L1PA16 LINE L1 0 6166 4376 682 194 59 6 chrY 11999016 11999186 -39514398 - L1PA13 LINE L1 -18 6145 5967 886 200 54 0 chrY 11999187 11999503 -39514081 + L1P4 LINE L1 5156 5483 -682 3144 105 58 14 chrY 11999506 11999992 -39513592 + L1PA10 LINE L1 2 508 -5638 8314 183 33 26 chrY 12000005 12000254 -39513330 + L1PA10 LINE L1 1970 2216 -3930 2847 16 0 0 chrY 12000254 12000566 -39513018 + AluYb8 SINE Alu 1 312 -6 8314 183 33 26 chrY 12000566 12001590 -39511994 + L1PA10 LINE L1 2216 3231 -2915 201 39 0 0 chrY 12001590 12001616 -39511968 + (TAAAA)n Simple_repeat Simple_repeat 2 27 0 8314 183 33 26 chrY 12001616 12002055 -39511529 + L1PA10 LINE L1 3231 3701 -2445 390 57 0 0 chrY 12002055 12002108 -39511476 + (CAA)n Simple_repeat Simple_repeat 3 55 0 8314 183 33 26 chrY 12002108 12002348 -39511236 + L1PA10 LINE L1 3701 3938 -2208 4180 79 8 36 chrY 12002353 12002970 -39510614 + L1PA7 LINE L1 5542 6141 -13 5211 133 50 7 chrY 12002975 12003991 -39509593 + L1PA10 LINE L1 5122 6164 -4 1103 241 18 3 chrY 12004048 12004376 -39509208 + L1PB3 LINE L1 5005 5337 -809 * 5136 137 9 17 chrY 12004363 12005107 -39508477 + L1PA8 LINE L1 4928 5666 -506 450 32 0 32 chrY 12005107 12005169 -39508415 + L1PA4 LINE L1 6088 6147 -8 5136 137 9 17 chrY 12005169 12005642 -39507942 + L1PA8 LINE L1 5666 6141 -31 192 40 0 0 chrY 12005645 12005670 -39507914 + (TTAAA)n Simple_repeat Simple_repeat 3 27 0 459 129 0 12 chrY 12005692 12005777 -39507807 + L1PA8A LINE L1 5750 5833 -298 2469 134 35 5 chrY 12005786 12006190 -39507394 + L1PA10 LINE L1 5742 6157 -11 1457 132 40 52 chrY 12006208 12006534 -39507050 + L1PB3 LINE L1 5319 5640 -514 1674 160 102 140 chrY 12006534 12007084 -39506500 + MER1A DNA MER1_type 1 529 0 2578 156 38 22 chrY 12007089 12007588 -39505996 + L1PB3 LINE L1 5645 6151 -3 21 36 0 0 chrY 12007588 12007616 -39505968 + AT_rich Low_complexity Low_complexity 1 28 0 605 249 61 0 chrY 12007632 12007797 -39505787 + MLT2D LTR ERVL 180 354 -60 1754 279 26 11 chrY 12008159 12009041 -39504543 + ERVL-D LTR ERVL 285 1297 -4467 * 2939 243 82 32 chrY 12009039 12010052 -39503532 - ERVL LTR ERVL -2582 3182 2119 * 4722 235 60 12 chrY 12010048 12011254 -39502330 + ERVL LTR ERVL 3322 4586 -1178 585 250 69 0 chrY 12011585 12011745 -39501839 - MER77 LTR ERV1 -8 597 427 1624 237 8 9 chrY 12011752 12012276 -39501308 - LTR69 LTR ERVL 0 588 4 54 84 0 0 chrY 12012664 12012795 -39500789 + AT_rich Low_complexity Low_complexity 1 131 0 2114 191 18 18 chrY 12013260 12013709 -39499875 + L1PA16 LINE L1 5709 6157 -9 2087 98 4 0 chrY 12013739 12014040 -39499544 + AluY SINE Alu 17 318 0 329 138 0 0 chrY 12014093 12014151 -39499433 - LTR69 LTR ERVL -338 250 193 1411 241 10 10 chrY 12014498 12014896 -39498688 + L1PA13 LINE L1 2165 2562 -3584 9717 197 29 22 chrY 12014898 12015671 -39497913 + L1PA13 LINE L1 2871 3637 -2526 441 0 0 0 chrY 12015671 12015720 -39497864 + (CA)n Simple_repeat Simple_repeat 2 50 0 9717 197 29 22 chrY 12015720 12018192 -39495392 + L1PA13 LINE L1 3637 6162 -1 711 226 12 24 chrY 12018482 12018650 -39494934 - AluSg/x SINE Alu -8 304 139 21 57 0 0 chrY 12019084 12019119 -39494465 + AT_rich Low_complexity Low_complexity 1 35 0 1613 159 30 15 chrY 12019193 12019457 -39494127 + AluSx SINE Alu 21 288 -24 398 295 57 19 chrY 12019485 12019695 -39493889 + L1ME3A LINE L1 5690 5907 -263 870 242 90 20 chrY 12019700 12020124 -39493460 - MLT2B1 LTR ERVL -8 512 1 292 161 54 0 chrY 12020183 12020239 -39493345 + L1ME3A LINE L1 5955 6013 -157 349 227 21 21 chrY 12020254 12020351 -39493233 + L1ME3A LINE L1 6065 6161 -9 348 242 81 12 chrY 12020485 12020640 -39492944 + MER41B LTR ERV1 142 350 -242 270 238 12 36 chrY 12020862 12020946 -39492638 + MER66-int LTR ERV1 185 266 -6410 417 326 27 32 chrY 12020951 12021138 -39492446 + MER66-int LTR ERV1 400 585 -6091 6078 208 41 32 chrY 12021892 12023346 -39490238 + MER66-int LTR ERV1 1253 2718 -3958 1553 229 38 83 chrY 12023347 12023927 -39489657 - MLT2B3 LTR ERVL 0 554 1 5125 178 5 6 chrY 12023927 12024865 -39488719 - HERVL-B3 LTR ERVL 0 5654 4718 10800 172 32 30 chrY 12024877 12027091 -39486493 - HERVL LTR ERVL -3434 2220 2 584 214 55 62 chrY 12027092 12027276 -39486308 - MLT2A2 LTR ERVL 0 453 293 5734 215 113 30 chrY 12027299 12028724 -39484860 + MSTA-int LTR MaLR 1 1563 -88 1483 223 0 7 chrY 12028724 12029007 -39484577 + AluJb SINE Alu 1 281 -31 5734 215 113 30 chrY 12029007 12029105 -39484479 + MSTA-int LTR MaLR 1563 1651 0 881 245 95 11 chrY 12029118 12029580 -39484004 - LTR2 LTR ERV1 -2 488 3 1970 186 35 2 chrY 12029582 12029986 -39483598 + MSTA LTR MaLR 8 424 -4 247 250 0 0 chrY 12029989 12030069 -39483515 + L1 LINE L1 4303 4382 -1764 * 2032 170 4 58 chrY 12030066 12030518 -39483066 - L1PA13 LINE L1 -197 5966 5539 383 173 0 13 chrY 12030624 12030699 -39482885 + LTR25 LTR ERV1 220 293 -501 932 205 9 47 chrY 12030722 12030937 -39482647 + LTR25 LTR ERV1 244 450 -344 3074 90 2 2 chrY 12030985 12031409 -39482175 - MER11D LTR ERVK -473 424 1 1125 211 65 4 chrY 12031409 12031669 -39481915 - HERVL-B3 LTR ERVL -4152 1502 1227 * 4094 216 19 3 chrY 12031661 12032575 -39481009 - HERVL-B3 LTR ERVL -4726 928 1 1373 245 68 84 chrY 12032575 12033134 -39480450 - MLT2B3 LTR ERVL 0 554 5 1284 344 18 19 chrY 12033342 12033959 -39479625 + L1PBa LINE L1 1053 1668 -5181 1872 132 44 0 chrY 12033961 12034301 -39479283 - L1PA8 LINE L1 -743 5403 5049 4862 111 5 40 chrY 12034301 12035076 -39478508 + L1PA8 LINE L1 5416 6164 -8 1477 221 47 27 chrY 12035084 12035676 -39477908 + L1PBa LINE L1 1664 2267 -4582 2299 200 11 0 chrY 12035686 12036141 -39477443 - L1P3 LINE L1 -5530 931 472 2577 170 22 9 chrY 12036141 12036593 -39476991 + LTR22A LTR ERVK 1 458 0 5265 179 22 11 chrY 12036593 12037564 -39476020 + HERVK22 LTR ERVK 1 981 -5856 * 18192 143 25 2 chrY 12037556 12040576 -39473008 + HERVK22 LTR ERVK 2248 5335 -1502 1047 181 0 0 chrY 12040569 12040751 -39472833 + HERVK22 LTR ERVK 6656 6837 0 * 2608 163 11 17 chrY 12040751 12041212 -39472372 + LTR22A LTR ERVK 1 458 0 761 166 22 17 chrY 12041226 12041407 -39472177 + L1PBa LINE L1 2764 2945 -3904 2838 125 56 113 chrY 12041409 12042049 -39471535 - LTR14B LTR ERVK 0 608 5 2290 310 55 39 chrY 12042058 12043793 -39469791 - HERVK14C LTR ERVK -40 7377 5616 20272 112 4 8 chrY 12043836 12046886 -39466698 - HERVK14C LTR ERVK -800 5145 2107 3339 128 0 0 chrY 12046887 12047409 -39466175 - HERVK14C LTR ERVK -4360 1585 1064 6870 58 7 9 chrY 12047425 12048487 -39465097 + L1PA4 LINE L1 5094 6154 -1 1997 152 48 25 chrY 12048827 12049183 -39464401 - THE1B LTR MaLR 0 364 1 8348 129 20 111 chrY 12049183 12050341 -39463243 - THE1B-int LTR MaLR 0 1580 319 1994 141 0 0 chrY 12050341 12050648 -39462936 + AluY SINE Alu 1 307 0 1145 144 40 0 chrY 12050648 12050821 -39462763 + AluSg/x SINE Alu 131 310 -2 8348 129 20 111 chrY 12050821 12051225 -39462359 - THE1B-int LTR MaLR -1259 321 1 1543 168 100 29 chrY 12051225 12051565 -39462019 - THE1B LTR MaLR 0 364 1 539 199 80 80 chrY 12051837 12052123 -39461461 - LTR23-int LTR ERV1 -4425 698 413 5563 64 4 1 chrY 12052156 12052874 -39460710 - L1PA5 LINE L1 0 6154 5435 2558 161 32 32 chrY 12053031 12053559 -39460025 + MER4D LTR ERV1 95 622 -250 8302 160 24 3 chrY 12053563 12055073 -39458511 + MER4B-int LTR ERV1 4659 6200 -558 948 177 0 6 chrY 12055078 12055242 -39458342 + MER4B-int LTR ERV1 6596 6758 0 2243 164 69 70 chrY 12055242 12055440 -39458144 + MER4B LTR ERV1 1 198 -581 1372 256 3 0 chrY 12055440 12055748 -39457836 + AluJb SINE Alu 1 309 -3 2243 164 69 70 chrY 12055748 12056146 -39457438 + MER4B LTR ERV1 198 770 -9 4519 131 136 0 chrY 12056157 12056884 -39456700 + LTR12 LTR ERV1 1 826 0 890 184 75 18 chrY 12056890 12057156 -39456428 + LTR12 LTR ERV1 142 714 0 * 22676 114 12 6 chrY 12057156 12060621 -39452963 + HERV9 LTR ERV1 80 3566 -4833 516 132 0 0 chrY 12060598 12060674 -39452910 + HERV9 LTR ERV1 1584 1659 -6740 * 34020 105 8 16 chrY 12060681 12065568 -39448016 + HERV9 LTR ERV1 3553 8399 0 5049 104 121 8 chrY 12065568 12066310 -39447274 + LTR12 LTR ERV1 1 826 0 738 106 3 0 chrY 12066310 12066417 -39447167 + LTR12 LTR ERV1 73 710 -4 1756 102 3 89 chrY 12067242 12067535 -39446049 - AluY SINE Alu -18 293 26 816 65 0 0 chrY 12069522 12069629 -39443955 + (TTC)n Simple_repeat Simple_repeat 3 109 0 1643 190 10 26 chrY 12070092 12070397 -39443187 - AluJb SINE Alu -10 302 3 388 149 103 0 chrY 12070696 12070783 -39442801 - L1 LINE L1 -1204 4942 4847 * 5159 239 126 19 chrY 12070775 12071282 -39442302 + L1 LINE L1 1 452 -7113 1751 179 0 0 chrY 12071282 12071585 -39441999 + AluSg SINE Alu 1 303 0 5159 239 126 19 chrY 12071585 12072625 -39440959 + L1 LINE L1 452 2403 -5162 583 261 13 26 chrY 12072628 12072781 -39440803 + L1PA12 LINE L1 80 230 -7351 397 291 6 113 chrY 12072807 12073010 -39440574 + L1PA12 LINE L1 610 2022 -4976 1566 149 75 0 chrY 12073014 12073294 -39440290 - AluSq SINE Alu 0 313 23 1825 217 10 5 chrY 12073330 12073722 -39439862 + L1PA12 LINE L1 3201 3594 -3990 27550 128 14 32 chrY 12075261 12081204 -39432380 - L1PA7 LINE L1 -5 6464 601 1226 174 0 14 chrY 12081204 12081417 -39432167 - AluSg SINE Alu -100 210 1 3442 280 53 32 chrY 12081835 12083101 -39430483 - HERVL32 LTR ERVL -2125 1293 1 1376 209 76 21 chrY 12083113 12083443 -39430141 - LTR32 LTR ERVL -11 460 113 535 264 10 15 chrY 12083568 12083765 -39429819 + L1 LINE L1 4366 4561 -3004 3459 137 13 16 chrY 12083765 12084313 -39429271 + MER41A LTR ERV1 1 546 -8 2497 188 21 13 chrY 12084321 12084799 -39428785 + MER41A-int LTR ERV1 1 482 -5464 * 4369 116 39 78 chrY 12084797 12085639 -39427945 - MER4B-int LTR ERV1 -1391 5367 4559 572 156 62 0 chrY 12085640 12085736 -39427848 - LTR12 LTR ERV1 -133 581 480 332 278 43 0 chrY 12085736 12085851 -39427733 - LTR30 LTR ERV1 -79 643 524 1191 142 9 66 chrY 12085851 12086077 -39427507 - LTR12 LTR ERV1 -456 258 46 2224 86 4 0 chrY 12086077 12086380 -39427204 + AluY SINE Alu 1 304 0 244 186 0 0 chrY 12086387 12086430 -39427154 - LTR30 LTR ERV1 -679 43 1 32450 129 25 11 chrY 12086431 12094586 -39418998 - MER4A-int LTR ERV1 -1 8398 54 612 173 42 18 chrY 12094578 12094704 -39418880 - LTR12 LTR ERV1 -130 584 300 * 322 244 12 0 chrY 12094704 12094790 -39418794 - LTR30 LTR ERV1 -80 642 556 1353 138 200 4 chrY 12094792 12095032 -39418552 - LTR12 LTR ERV1 -427 287 1 10083 175 46 31 chrY 12095033 12095406 -39418178 - MER4A-int LTR ERV1 -2198 4560 4194 1552 174 10 35 chrY 12095406 12095694 -39417890 - AluY SINE Alu -25 286 6 10083 175 46 31 chrY 12095694 12096758 -39416826 - MER4A-int LTR ERV1 -2564 4194 3079 588 99 0 12 chrY 12096758 12096839 -39416745 + MADE1 DNA Mariner 1 80 0 10083 175 46 31 chrY 12096839 12097475 -39416109 - MER4A-int LTR ERV1 -3679 3079 2454 1195 258 91 46 chrY 12097475 12098045 -39415539 + LTR9 LTR ERV1 1 596 -16 356 116 0 0 chrY 12098062 12098131 -39415453 - MER4B-int LTR ERV1 -4301 2457 2389 233 245 0 5 chrY 12098148 12098304 -39415280 + AluSq/x SINE Alu 2 237 -62 9085 162 65 67 chrY 12098357 12099172 -39414412 - MER4A-int LTR ERV1 -4368 2390 1575 471 203 0 0 chrY 12099172 12099266 -39414318 + AluSg/x SINE Alu 205 298 0 9085 162 65 67 chrY 12099266 12100573 -39413011 - MER4A-int LTR ERV1 -5183 1575 198 999 266 84 32 chrY 12100625 12100933 -39412651 - MER4A-int LTR ERV1 -4163 2168 1845 3614 256 57 6 chrY 12101123 12102115 -39411469 + L1PB1 LINE L1 6 1047 -5816 6936 171 53 10 chrY 12102117 12102455 -39411129 + L1PB1 LINE L1 1093 1415 -5448 3575 133 6 8 chrY 12102455 12102967 -39410617 - MER9 LTR ERVK 0 511 1 6936 171 53 10 chrY 12102967 12104090 -39409494 + L1PB1 LINE L1 1415 2759 -4104 3439 126 42 70 chrY 12104132 12104745 -39408839 - LTR4 LTR ERV1 0 596 1 12847 204 25 25 chrY 12104751 12108430 -39405154 + L1PB1 LINE L1 2833 6507 -360 221 182 23 0 chrY 12108431 12108475 -39405109 + (CATA)n Simple_repeat Simple_repeat 2 46 0 230 209 45 0 chrY 12108478 12108545 -39405039 - L1MCa LINE L1 -4362 2064 1995 2135 159 33 3 chrY 12108552 12108911 -39404673 + L1PB1 LINE L1 6498 6867 0 195 42 0 0 chrY 12108944 12108968 -39404616 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 371 134 60 15 chrY 12108978 12109045 -39404539 - MER4A-int LTR ERV1 -5790 808 739 532 181 43 26 chrY 12109065 12109281 -39404303 - MER4A-int LTR ERV1 -5992 606 344 5768 213 72 82 chrY 12109285 12110851 -39402733 + L1PA8 LINE L1 719 2261 -4601 2781 22 0 0 chrY 12110851 12111162 -39402422 + AluYa5 SINE Alu 1 311 0 5768 213 72 82 chrY 12111162 12111643 -39401941 + L1PA8 LINE L1 2261 2745 -4117 * 18351 125 22 2 chrY 12111640 12115391 -39398193 + L1PA8 LINE L1 3067 6894 0 1403 201 99 19 chrY 12115396 12115719 -39397865 - MER4A-int LTR ERV1 -6249 349 1 1494 183 8 0 chrY 12115721 12115977 -39397607 - MER4A LTR ERV1 0 664 417 1038 148 0 0 chrY 12115977 12116030 -39397554 + (TTTC)n Simple_repeat Simple_repeat 1 229 0 1038 148 0 0 chrY 12116030 12116206 -39397378 + (TTTC)n Simple_repeat Simple_repeat 4 179 0 2084 138 19 58 chrY 12116388 12116765 -39396819 - MER4B LTR ERV1 -248 362 1 887 249 55 121 chrY 12116848 12117526 -39396058 - MER21B LTR ERV1 -207 656 24 28 0 0 0 chrY 12118065 12118093 -39395491 + AT_rich Low_complexity Low_complexity 1 28 0 2215 228 42 15 chrY 12118112 12118436 -39395148 - L1MB5 LINE L1 -8 6166 5821 1755 129 17 46 chrY 12118436 12118738 -39394846 - AluSx SINE Alu -19 293 1 2215 228 42 15 chrY 12118738 12118943 -39394641 - L1MB5 LINE L1 -353 5821 5623 341 164 123 0 chrY 12120059 12120132 -39393452 - MER45A DNA AcHobo -1 177 96 41513 49 29 2 chrY 12120132 12126108 -39387476 + L1PA3 LINE L1 4 6146 -9 436 298 18 0 chrY 12126108 12126222 -39387362 - MER45A DNA AcHobo -60 118 3 392 312 111 21 chrY 12126825 12127059 -39386525 + MIR SINE MIR 8 262 0 226 369 0 54 chrY 12127236 12127347 -39386237 + L3 LINE CR1 1460 1564 -13 182 237 53 53 chrY 12127623 12127699 -39385885 + MIR SINE MIR 95 170 -92 357 24 0 0 chrY 12127876 12127918 -39385666 + (TG)n Simple_repeat Simple_repeat 2 43 0 705 219 0 3 chrY 12127919 12128142 -39385442 - AluJb SINE Alu -22 290 2 1985 141 3 3 chrY 12128154 12128451 -39385133 - AluSx SINE Alu -8 304 8 207 216 20 0 chrY 12128655 12128706 -39384878 + CT-rich Low_complexity Low_complexity 3 54 0 185 167 0 0 chrY 12129336 12129366 -39384218 + MIR SINE MIR 111 140 -68 378 248 67 0 chrY 12129658 12129763 -39383821 - MIR SINE MIR -72 190 79 2423 15 0 0 chrY 12132014 12132307 -39381277 + AluYa5 SINE Alu 46 338 0 1572 149 48 0 chrY 12133408 12133676 -39379908 + AluSx SINE Alu 25 305 -7 23 0 0 0 chrY 12135147 12135170 -39378414 + AT_rich Low_complexity Low_complexity 1 23 0 219 234 0 0 chrY 12135274 12135321 -39378263 - L2 LINE L2 0 3313 3267 2072 122 7 0 chrY 12135325 12135613 -39377971 - AluSx SINE Alu -22 290 1 1976 137 3 10 chrY 12135733 12136047 -39377537 - AluSx SINE Alu 0 312 1 234 252 41 7 chrY 12136653 12136800 -39376784 + (TTATA)n Simple_repeat Simple_repeat 2 153 0 232 328 172 0 chrY 12136880 12136996 -39376588 - L2 LINE L2 -4 3268 3133 1919 151 27 7 chrY 12138267 12138566 -39375018 + AluSc SINE Alu 3 307 -2 2883 249 63 41 chrY 12139226 12140391 -39373193 + L1MB7 LINE L1 3135 4325 -1821 1425 200 0 28 chrY 12140404 12140487 -39373097 + AluJb SINE Alu 12 96 -216 1745 154 87 42 chrY 12140487 12140845 -39372739 + THE1C LTR MaLR 1 374 -1 1425 200 0 28 chrY 12140845 12141046 -39372538 + AluJb SINE Alu 96 288 -24 24 32 0 0 chrY 12141046 12141077 -39372507 + AT_rich Low_complexity Low_complexity 1 31 0 2024 200 23 14 chrY 12141137 12141567 -39372017 + L1MB7 LINE L1 5369 5802 -489 1282 231 88 0 chrY 12141558 12141887 -39371697 + L1MB3 LINE L1 5568 5925 -258 * 1767 164 73 95 chrY 12141899 12142406 -39371178 - LTR1 LTR ERV1 -289 496 1 580 173 50 14 chrY 12142765 12142904 -39370680 + L1MB7 LINE L1 6040 6183 -1 219 319 80 18 chrY 12143406 12143519 -39370065 + MIR SINE MIR 69 188 -74 2322 112 0 0 chrY 12145337 12145640 -39367944 + AluSg SINE Alu 1 303 -7 520 304 74 47 chrY 12146393 12146689 -39366895 + LTR57-int LTR ERVL 1875 2178 -3165 1729 181 3 10 chrY 12148237 12148554 -39365030 + AluSx SINE Alu 1 312 0 455 275 77 10 chrY 12148587 12148794 -39364790 + MER31-int LTR ERV1 2356 2576 -2547 390 203 65 72 chrY 12148766 12148904 -39364680 + MER31-int LTR ERV1 2460 2596 -2340 * 598 170 128 144 chrY 12148898 12149122 -39364462 + MER31-int LTR ERV1 1282 1499 -3437 2524 84 0 0 chrY 12149122 12149433 -39364151 - AluY SINE Alu 0 311 1 598 170 128 144 chrY 12149433 12149584 -39364000 + MER31-int LTR ERV1 1499 1651 -3285 43776 53 2 1 chrY 12150739 12156888 -39356696 + L1PA4 LINE L1 1 6155 0 868 259 95 11 chrY 12156892 12157154 -39356430 + LTR57-int LTR ERVL 2837 3120 -2410 259 281 88 18 chrY 12157707 12157821 -39355763 + L2 LINE L2 3192 3313 0 726 175 46 133 chrY 12158388 12158597 -39354987 + MER20 DNA MER1_type 1 188 -31 1940 121 0 7 chrY 12158597 12158870 -39354714 + AluSg SINE Alu 35 305 -5 726 175 46 133 chrY 12158870 12158900 -39354684 + MER20 DNA MER1_type 188 219 0 401 281 55 0 chrY 12158981 12159109 -39354475 + MER5B DNA MER1_type 4 138 -40 2067 127 0 3 chrY 12159439 12159765 -39353819 - AluSg SINE Alu 0 325 1 1668 178 3 24 chrY 12159923 12160221 -39353363 + AluSx SINE Alu 5 296 -16 1666 173 37 0 chrY 12160320 12160620 -39352964 - AluSx SINE Alu -1 311 1 263 247 0 25 chrY 12160682 12160763 -39352821 + CT-rich Low_complexity Low_complexity 1 79 0 239 318 36 18 chrY 12161144 12161254 -39352330 + L2 LINE L2 2140 2251 -1063 3314 120 0 0 chrY 12161327 12161795 -39351789 - L1PB1 LINE L1 -185 5966 5499 1101 122 0 64 chrY 12161796 12161984 -39351600 + L1PB1 LINE L1 5974 6149 -2 1882 168 3 10 chrY 12162670 12162980 -39350604 - AluSx SINE Alu -4 308 1 281 351 47 32 chrY 12163027 12163432 -39350152 - L1ME3A LINE L1 -235 5935 5525 623 239 17 0 chrY 12163441 12163558 -39350026 + FLAM_C SINE Alu 1 119 -24 330 277 71 52 chrY 12164149 12164304 -39349280 - MIR SINE MIR -64 198 41 229 279 13 13 chrY 12165375 12165454 -39348130 + L1MDa LINE L1 1859 1937 -4603 226 49 24 24 chrY 12165511 12165552 -39348032 + (TCTA)n Simple_repeat Simple_repeat 2 42 0 21 36 0 0 chrY 12165576 12165604 -39347980 + AT_rich Low_complexity Low_complexity 1 28 0 22 56 0 0 chrY 12165616 12165652 -39347932 + AT_rich Low_complexity Low_complexity 1 36 0 234 0 0 0 chrY 12165876 12165902 -39347682 + (TA)n Simple_repeat Simple_repeat 1 26 0 189 132 0 0 chrY 12165923 12165961 -39347623 + (TCTA)n Simple_repeat Simple_repeat 1 38 0 851 169 71 71 chrY 12166576 12166801 -39346783 - AluJo SINE Alu -1 311 87 860 139 60 13 chrY 12167098 12167249 -39346335 + AluSx SINE Alu 14 171 -141 1813 117 37 4 chrY 12167735 12168037 -39345547 - AluSg SINE Alu 0 311 1 25 0 0 0 chrY 12169489 12169514 -39344070 + AT_rich Low_complexity Low_complexity 1 25 0 42027 49 23 1 chrY 12169514 12175536 -39338048 - L1PA3 LINE L1 0 6155 2 312 70 0 0 chrY 12175587 12175630 -39337954 + (TG)n Simple_repeat Simple_repeat 2 44 0 1525 177 8 4 chrY 12176351 12176617 -39336967 - AluJb SINE Alu -13 299 33 237 369 15 23 chrY 12176647 12176777 -39336807 + MER5A DNA MER1_type 9 137 -52 209 157 78 0 chrY 12176809 12176860 -39336724 + (CAAA)n Simple_repeat Simple_repeat 1 55 0 1848 166 0 10 chrY 12176862 12177164 -39336420 + AluSx SINE Alu 1 299 -13 1856 171 43 12 chrY 12178489 12178816 -39334768 - MER1B DNA MER1_type 0 337 1 705 234 120 0 chrY 12178850 12179008 -39334576 - MER45A DNA AcHobo -1 177 1 2125 105 13 0 chrY 12179795 12180100 -39333484 + AluSc SINE Alu 1 309 0 198 0 0 0 chrY 12182463 12182485 -39331099 + (T)n Simple_repeat Simple_repeat 1 22 0 333 0 0 0 chrY 12182860 12182897 -39330687 + (T)n Simple_repeat Simple_repeat 1 37 0 1890 119 82 17 chrY 12182918 12183212 -39330372 + AluSq SINE Alu 1 313 0 633 168 80 9 chrY 12183237 12183350 -39330234 + AluSq/x SINE Alu 2 122 -190 285 253 73 0 chrY 12185415 12185533 -39328051 + MIR SINE MIR 81 208 -54 1282 214 22 54 chrY 12185968 12186281 -39327303 - AluJo SINE Alu -7 305 3 1896 142 0 17 chrY 12187186 12187475 -39326109 + AluSx SINE Alu 1 284 -28 1713 144 20 17 chrY 12187489 12187788 -39325796 + AluSc SINE Alu 1 300 -9 894 191 0 13 chrY 12188281 12188438 -39325146 - AluSg/x SINE Alu -16 296 142 360 200 0 0 chrY 12188442 12188502 -39325082 - AluS SINE Alu -243 60 1 2050 119 3 14 chrY 12188516 12188810 -39324774 - AluSx SINE Alu -11 301 11 749 228 6 13 chrY 12189959 12190117 -39323467 + FRAM SINE Alu 1 157 -19 1192 200 0 9 chrY 12190228 12190453 -39323131 - AluJo SINE Alu -3 309 87 676 164 62 39 chrY 12190457 12190585 -39322999 - FLAM_C SINE Alu -2 131 1 232 254 32 0 chrY 12190615 12190678 -39322906 + CT-rich Low_complexity Low_complexity 2 66 0 1684 153 41 20 chrY 12190960 12191255 -39322329 + AluSc SINE Alu 1 301 -8 640 225 72 34 chrY 12191514 12191723 -39321861 - MER20 DNA MER1_type -2 217 1 273 275 0 50 chrY 12191723 12191883 -39321701 + (TCTCTG)n Simple_repeat Simple_repeat 4 155 0 595 221 25 8 chrY 12192830 12192952 -39320632 + FLAM_A SINE Alu 11 134 -8 1291 210 7 46 chrY 12193159 12193464 -39320120 + AluJo SINE Alu 5 297 -15 512 316 64 0 chrY 12194903 12195074 -39318510 - MER5A DNA MER1_type -7 182 1 231 114 0 0 chrY 12195199 12195234 -39318350 + (TG)n Simple_repeat Simple_repeat 2 36 0 1960 123 0 41 chrY 12195242 12195535 -39318049 - AluY SINE Alu -30 281 1 1735 204 89 34 chrY 12196347 12196787 -39316797 + MLT1C LTR MaLR 3 466 -1 21 0 0 0 chrY 12198662 12198683 -39314901 + AT_rich Low_complexity Low_complexity 1 21 0 2955 6 0 0 chrY 12198700 12199016 -39314568 + AluYb8 SINE Alu 1 316 -2 536 153 0 12 chrY 12199160 12199245 -39314339 + AluJb SINE Alu 205 288 -24 576 149 28 0 chrY 12199372 12199479 -39314105 + L1MB7 LINE L1 5968 6077 -107 42108 46 22 2 chrY 12199497 12205527 -39308057 - L1PA2 LINE L1 0 6155 1 557 122 31 20 chrY 12205528 12205626 -39307958 + L1MB7 LINE L1 6067 6165 -19 41511 66 6 5 chrY 12205626 12211766 -39301818 - L1PA4 LINE L1 -6 6149 1 993 184 38 52 chrY 12212022 12212234 -39301350 + MER2 DNA MER2_type 30 238 -107 24 53 0 0 chrY 12212279 12212317 -39301267 + AT_rich Low_complexity Low_complexity 1 38 0 182 162 54 0 chrY 12212794 12212831 -39300753 - L2 LINE L2 -212 3060 3022 877 191 12 6 chrY 12212956 12213124 -39300460 - AluSq SINE Alu -11 302 134 1737 118 27 8 chrY 12213232 12213494 -39300090 - L1MC1 LINE L1 -1 6332 6066 2129 130 3 0 chrY 12214387 12214688 -39298896 - AluSp SINE Alu -11 302 1 220 273 15 0 chrY 12215050 12215116 -39298468 - MIR SINE MIR -32 230 164 2732 118 0 11 chrY 12215533 12215899 -39297685 - THE1B LTR MaLR -2 362 1 21 0 0 0 chrY 12215973 12215994 -39297590 + AT_rich Low_complexity Low_complexity 1 21 0 259 342 71 7 chrY 12216247 12216402 -39297182 + MIR SINE MIR 69 233 -29 22 0 0 0 chrY 12216412 12216434 -39297150 + AT_rich Low_complexity Low_complexity 1 22 0 1648 161 92 28 chrY 12218005 12218396 -39295188 + L1MB7 LINE L1 5762 6177 -7 194 415 0 0 chrY 12218757 12218875 -39294709 - MIR SINE MIR -61 201 84 1728 176 201 8 chrY 12218916 12219275 -39294309 + MSTA LTR MaLR 1 428 0 21 0 0 0 chrY 12219617 12219638 -39293946 + AT_rich Low_complexity Low_complexity 1 21 0 413 264 100 0 chrY 12219792 12219932 -39293652 - L1MD2 LINE L1 -12 6347 6194 2178 110 3 0 chrY 12220189 12220481 -39293103 - AluSg SINE Alu -17 293 1 2100 137 3 0 chrY 12220783 12221083 -39292501 + AluY SINE Alu 1 301 -10 181 373 0 0 chrY 12222207 12222282 -39291302 - MIR SINE MIR -117 145 71 259 309 81 7 chrY 12222481 12222630 -39290954 + L2 LINE L2 2500 2659 -655 2324 47 44 3 chrY 12222687 12222984 -39290600 + AluY SINE Alu 1 309 -2 267 152 0 0 chrY 12222988 12223034 -39290550 + (TATATG)n Simple_repeat Simple_repeat 3 48 0 1829 180 3 3 chrY 12223157 12223463 -39290121 - AluSx SINE Alu -6 306 1 460 300 167 45 chrY 12223506 12223836 -39289748 + L2 LINE L2 2944 3313 0 2311 202 55 0 chrY 12223974 12224409 -39289175 + MER65C LTR ERV1 1 459 -2 1051 236 19 5 chrY 12224528 12224744 -39288840 + MER20 DNA MER1_type 1 219 0 22 35 0 0 chrY 12224796 12224825 -39288759 + AT_rich Low_complexity Low_complexity 1 29 0 202 256 0 0 chrY 12224831 12224874 -39288710 - L2 LINE L2 -20 3252 3210 797 270 94 82 chrY 12224921 12225387 -39288197 + MLT1J LTR MaLR 2 473 -38 197 225 169 28 chrY 12225453 12225524 -39288060 - MIR SINE MIR -115 147 67 375 23 0 0 chrY 12225964 12226008 -39287576 + (TTCA)n Simple_repeat Simple_repeat 3 46 0 837 183 102 0 chrY 12226008 12226145 -39287439 - AluSg/x SINE Alu -25 287 137 305 178 0 0 chrY 12226145 12226190 -39287394 - Alu SINE Alu -254 45 1 2054 140 0 3 chrY 12226296 12226604 -39286980 - AluSx SINE Alu -5 307 1 324 0 0 0 chrY 12226668 12226704 -39286880 + (TA)n Simple_repeat Simple_repeat 2 37 0 280 337 0 11 chrY 12227678 12227767 -39285817 - MIR3 SINE MIR -15 193 106 922 224 109 52 chrY 12228005 12228354 -39285230 - MER39 LTR ERV1 -6 701 333 359 255 37 15 chrY 12228404 12228515 -39285069 - LTR48B LTR ERV1 -514 108 1 1233 267 46 3 chrY 12228558 12228884 -39284700 - MER58B DNA MER1_type -1 340 1 2198 110 10 0 chrY 12228969 12229270 -39284314 - AluSq SINE Alu -9 304 1 689 187 69 149 chrY 12229530 12229905 -39283679 + LTR37A LTR ERV1 81 425 -1 1742 179 0 13 chrY 12231072 12231379 -39282205 - AluJo SINE Alu -9 303 1 5683 96 30 28 chrY 12232941 12233720 -39279864 + LTR17 LTR ERV1 1 780 0 1558 161 12 62 chrY 12234547 12234870 -39278714 - AluSx SINE Alu -5 307 1 980 115 22 7 chrY 12235224 12235363 -39278221 + AluSg1 SINE Alu 1 141 -168 318 240 16 8 chrY 12235364 12235489 -39278095 + CT-rich Low_complexity Low_complexity 2 127 0 28860 125 16 12 chrY 12235534 12241337 -39272247 - L1PA7 LINE L1 -2 6467 622 727 69 59 0 chrY 12241798 12241900 -39271684 - L1P LINE L1 -2683 3463 3356 27 62 0 0 chrY 12241924 12241972 -39271612 + AT_rich Low_complexity Low_complexity 1 48 0 213 339 28 51 chrY 12242195 12242372 -39271212 + MER5B DNA MER1_type 4 176 -2 381 257 21 43 chrY 12242650 12242790 -39270794 + MIR SINE MIR 65 201 -61 264 30 0 0 chrY 12242899 12242932 -39270652 + (TTTA)n Simple_repeat Simple_repeat 2 34 0 1234 230 48 79 chrY 12243964 12244511 -39269073 - MER34 LTR ERV1 -9 533 4 385 181 28 0 chrY 12244967 12245039 -39268545 + AluJ/FRAM SINE Alu 227 300 -2 1072 167 20 5 chrY 12245051 12245249 -39268335 - L1MB2 LINE L1 -31 6140 5940 261 57 0 0 chrY 12245276 12245311 -39268273 + (T)n Simple_repeat Simple_repeat 1 35 0 1960 126 4 0 chrY 12245365 12245635 -39267949 + AluSx SINE Alu 31 301 -11 241 254 0 0 chrY 12245839 12245894 -39267690 - MLT1I LTR MaLR -2 407 353 284 308 105 0 chrY 12245959 12246087 -39267497 - MLT1I LTR MaLR -211 198 68 402 198 198 12 chrY 12246843 12246989 -39266595 - MER5A DNA MER1_type -9 180 4 561 139 9 17 chrY 12247648 12247763 -39265821 + CT-rich Low_complexity Low_complexity 1 114 0 * 852 130 5 32 chrY 12247742 12247927 -39265657 + (TCC)n Simple_repeat Simple_repeat 1 180 0 1351 162 81 7 chrY 12247942 12248214 -39265370 - L1MB3 LINE L1 -23 6160 5869 1272 121 1 7 chrY 12248306 12248501 -39265083 - pTR5 LTR ERV1 -2046 392 66 327 213 43 32 chrY 12248501 12248595 -39264989 - LTR30 LTR ERV1 -80 642 548 3593 162 60 50 chrY 12248596 12249548 -39264036 - pTR5 LTR ERV1 -410 2028 741 886 88 7 59 chrY 12250952 12251088 -39262496 - L1MA1 LINE L1 -2 6300 6172 552 217 28 80 chrY 12251115 12251207 -39262377 - MER3 DNA MER1_type -5 204 109 960 199 27 59 chrY 12251207 12251428 -39262156 + MER20 DNA MER1_type 2 215 -4 552 217 28 80 chrY 12251428 12251547 -39262037 - MER3 DNA MER1_type -100 109 4 2650 127 65 0 chrY 12252433 12252820 -39260764 + L1PA10 LINE L1 5755 6166 -2 511 171 12 0 chrY 12253223 12253305 -39260279 + AluSg/x SINE Alu 212 294 -18 8234 75 15 1 chrY 12253470 12254463 -39259121 + LTR13 LTR ERVK 1 1007 0 22 0 0 0 chrY 12254659 12254681 -39258903 + AT_rich Low_complexity Low_complexity 1 22 0 341 177 35 50 chrY 12254884 12255025 -39258559 + (TA)n Simple_repeat Simple_repeat 2 140 0 215 297 0 54 chrY 12255949 12256023 -39257561 - L2 LINE L2 -334 2979 2910 387 319 159 48 chrY 12256075 12256621 -39256963 - L2 LINE L2 -508 2806 2200 2434 84 0 0 chrY 12256939 12257249 -39256335 + AluY SINE Alu 1 310 -1 1252 229 47 7 chrY 12258088 12258385 -39255199 - L1MC2 LINE L1 -58 6286 5978 455 194 19 19 chrY 12258405 12258513 -39255071 + L1PA11 LINE L1 6066 6173 -1 426 219 7 75 chrY 12258897 12259043 -39254541 - pTR5 LTR ERV1 -2284 154 19 342 206 79 56 chrY 12259044 12259170 -39254414 - LTR12 LTR ERV1 -347 367 239 1685 156 100 0 chrY 12259615 12259674 -39253910 + L1PB1 LINE L1 5710 5762 -389 330 26 0 0 chrY 12259674 12259713 -39253871 + (TAGA)n Simple_repeat Simple_repeat 1 39 0 1685 156 100 0 chrY 12259713 12259973 -39253611 + L1PB1 LINE L1 5762 6061 -90 4289 160 123 47 chrY 12259973 12261411 -39252173 + pTR5 LTR ERV1 743 2438 0 575 141 0 0 chrY 12261414 12261506 -39252078 + L1PB1 LINE L1 6058 6149 -2 1561 205 27 23 chrY 12261650 12262040 -39251544 + MLT1B LTR MaLR 1 396 0 1308 153 14 0 chrY 12262044 12262266 -39251318 + MLT1B LTR MaLR 162 386 -4 704 192 0 23 chrY 12262604 12262734 -39250850 - FLAM_C SINE Alu -6 127 1 213 205 133 48 chrY 12262774 12262857 -39250727 + MIR SINE MIR 16 105 -103 1131 196 0 0 chrY 12263318 12263502 -39250082 + AluSx SINE Alu 2 185 -127 836 203 14 14 chrY 12263502 12263650 -39249934 - AluJo SINE Alu -163 149 2 3297 171 8 28 chrY 12264093 12264740 -39248844 - MER41B LTR ERV1 -11 597 1 22 0 0 0 chrY 12264865 12264887 -39248697 + AT_rich Low_complexity Low_complexity 1 22 0 30 0 0 0 chrY 12265839 12265869 -39247715 + AT_rich Low_complexity Low_complexity 1 30 0 474 361 33 0 chrY 12266110 12266293 -39247291 - MER5A DNA MER1_type 0 189 1 231 143 33 33 chrY 12266810 12266901 -39246683 + (TA)n Simple_repeat Simple_repeat 1 91 0 2037 125 3 0 chrY 12267351 12267646 -39245938 + AluY SINE Alu 1 296 -15 731 282 76 31 chrY 12267723 12268457 -39245127 - L1MEc LINE L1 -2659 3556 2790 499 280 95 24 chrY 12268463 12268799 -39244785 - L1MEc LINE L1 -4394 2002 1643 255 31 0 0 chrY 12268814 12268846 -39244738 + (TG)n Simple_repeat Simple_repeat 1 32 0 1444 138 36 4 chrY 12268850 12269075 -39244509 - AluY SINE Alu -37 274 43 1251 322 71 43 chrY 12269081 12269504 -39244080 - L1MEc LINE L1 -4767 1629 1219 246 32 0 0 chrY 12269504 12269535 -39244049 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 1251 322 71 43 chrY 12269535 12269579 -39244005 - L1MEc LINE L1 -5177 1219 1178 2218 123 3 0 chrY 12269579 12269888 -39243696 - AluSp SINE Alu -3 310 1 1251 322 71 43 chrY 12269888 12270891 -39242693 - L1MEc LINE L1 -5218 1178 117 2544 133 46 14 chrY 12270891 12271326 -39242258 - HSMAR2 DNA Mariner 0 1302 854 1871 181 115 13 chrY 12271323 12271715 -39241869 - LTR51 LTR ERV1 -239 432 1 * 377 235 25 0 chrY 12271715 12271794 -39241790 - MER20 DNA MER1_type -107 112 32 1927 130 79 23 chrY 12271873 12272227 -39241357 - THE1C LTR MaLR -1 374 1 188 222 16 127 chrY 12273102 12273165 -39240419 + L2 LINE L2 3184 3239 -33 1652 186 3 17 chrY 12273780 12274081 -39239503 - AluSx SINE Alu -15 297 1 271 291 47 0 chrY 12274210 12274296 -39239288 + MER68 LTR ERV1 4 93 -469 554 300 70 21 chrY 12274357 12274684 -39238900 - HAL1b LINE L1 -358 990 648 42310 54 2 2 chrY 12274718 12280875 -39232709 - L1PA3 LINE L1 0 6155 1 1004 95 0 0 chrY 12280879 12281016 -39232568 - AluY SINE Alu -16 295 159 405 329 34 30 chrY 12281278 12281512 -39232072 - HAL1b LINE L1 -854 494 260 1564 158 4 0 chrY 12281553 12281793 -39231791 - AluSx SINE Alu -14 298 58 21 0 0 0 chrY 12284020 12284041 -39229543 + AT_rich Low_complexity Low_complexity 1 21 0 2109 121 16 22 chrY 12284353 12284732 -39228852 - AluSx SINE Alu 0 377 1 235 286 88 0 chrY 12285656 12285747 -39227837 - MLT1J2 LTR MaLR -295 155 57 1541 203 16 3 chrY 12286592 12286898 -39226686 + AluJo SINE Alu 3 312 0 2260 109 0 0 chrY 12288139 12288441 -39225143 - AluY SINE Alu -9 302 1 1568 150 3 92 chrY 12288448 12288623 -39224961 - AluSx SINE Alu -15 297 163 297 0 0 0 chrY 12288623 12288656 -39224928 + (TG)n Simple_repeat Simple_repeat 2 34 0 1568 150 3 92 chrY 12288656 12288806 -39224778 - AluSx SINE Alu -149 163 1 3189 155 11 19 chrY 12288933 12289463 -39224121 - MER1A DNA MER1_type 0 527 2 1262 204 74 11 chrY 12291143 12291412 -39222172 + AluJo SINE Alu 1 286 -26 2055 142 0 3 chrY 12291739 12292035 -39221549 - AluSg SINE Alu -11 299 5 36 40 0 0 chrY 12292303 12292353 -39221231 + AT_rich Low_complexity Low_complexity 1 50 0 216 158 0 0 chrY 12292502 12292540 -39221044 + (TATG)n Simple_repeat Simple_repeat 3 40 0 1981 159 0 0 chrY 12292552 12292841 -39220743 - AluSq SINE Alu -24 289 1 180 211 189 22 chrY 12293025 12293115 -39220469 - L3b LINE CR1 -275 1308 1204 208 143 0 0 chrY 12297635 12297670 -39215914 + (A)n Simple_repeat Simple_repeat 1 35 0 303 104 0 0 chrY 12298717 12298765 -39214819 + (CA)n Simple_repeat Simple_repeat 1 48 0 186 43 0 0 chrY 12301388 12301411 -39212173 + (TTTTC)n Simple_repeat Simple_repeat 3 25 0 515 156 16 66 chrY 12302327 12302377 -39211207 - L1MB7 LINE L1 -10 6174 6123 8921 44 3 0 chrY 12302377 12303445 -39210139 + MER11C LTR ERVK 1 1071 0 515 156 16 66 chrY 12303445 12303516 -39210068 - L1MB7 LINE L1 -61 6123 6059 1913 102 0 0 chrY 12303518 12303783 -39209801 - AluY SINE Alu -5 306 42 211 302 63 38 chrY 12304073 12304232 -39209352 + L2 LINE L2 2366 2528 -786 524 344 59 60 chrY 12304430 12305116 -39208468 + L2 LINE L2 2637 3311 -2 309 281 50 22 chrY 12305215 12305354 -39208230 + L1MB7 LINE L1 6033 6175 -9 956 229 14 62 chrY 12306882 12307174 -39206410 - LTR4 LTR ERV1 -2 594 317 463 282 18 47 chrY 12307376 12307546 -39206038 - LTR4 LTR ERV1 -396 200 36 216 0 0 0 chrY 12308720 12308744 -39204840 + (T)n Simple_repeat Simple_repeat 1 24 0 211 224 17 35 chrY 12309810 12309868 -39203716 + MIR SINE MIR 113 169 -93 1088 229 0 0 chrY 12309962 12310172 -39203412 + MER58A DNA MER1_type 1 210 -14 218 305 24 24 chrY 12310362 12310444 -39203140 + MIR SINE MIR 60 141 -67 327 203 0 0 chrY 12310545 12310614 -39202970 + (TATATG)n Simple_repeat Simple_repeat 2 70 0 1555 209 13 13 chrY 12310929 12311240 -39202344 - AluJo SINE Alu -1 311 1 519 233 7 67 chrY 12312004 12312154 -39201430 - L2 LINE L2 -1 3312 3172 2104 154 64 29 chrY 12312175 12312689 -39200895 - MLT2A2 LTR ERVL 0 554 1 1603 265 133 42 chrY 12312786 12313775 -39199809 - L2 LINE L2 -281 3032 1959 3260 138 11 18 chrY 12314086 12314637 -39198947 + L1PA10 LINE L1 5606 6152 -16 1601 204 3 7 chrY 12315627 12315926 -39197658 - AluJb SINE Alu -10 302 5 43257 104 36 30 chrY 12316469 12324715 -39188869 + HERV9 LTR ERV1 17 6550 0 7376 119 103 15 chrY 12324715 12326788 -39186796 + HERV9 LTR ERV1 506 8399 0 367 296 52 9 chrY 12327003 12327118 -39186466 - L2 LINE L2 -5 3308 3189 2282 123 0 0 chrY 12327542 12327852 -39185732 - AluSq SINE Alu -3 310 1 300 393 15 15 chrY 12328278 12328413 -39185171 - L2 LINE L2 0 3272 3138 1226 214 81 27 chrY 12328574 12328944 -39184640 + MLT1D LTR MaLR 116 505 0 202 243 54 63 chrY 12328946 12329057 -39184527 - MIR SINE MIR -68 194 85 190 253 41 153 chrY 12329500 12329639 -39183945 + L2 LINE L2 2855 3008 -305 610 247 79 0 chrY 12329639 12329829 -39183755 - MER3 DNA MER1_type -4 205 1 190 253 41 153 chrY 12329829 12329977 -39183607 + L2 LINE L2 3008 3079 -234 2337 71 6 46 chrY 12329977 12330303 -39183281 - AluSq SINE Alu 0 313 1 190 253 41 153 chrY 12330303 12330453 -39183131 + L2 LINE L2 3079 3244 -69 315 0 0 0 chrY 12333635 12333670 -39179914 + (CA)n Simple_repeat Simple_repeat 2 36 0 605 234 9 0 chrY 12333678 12333789 -39179795 - FLAM_A SINE Alu -30 112 1 840 173 0 0 chrY 12335080 12335213 -39178371 + FLAM_C SINE Alu 1 133 0 187 256 44 7 chrY 12337329 12337466 -39176118 + CT-rich Low_complexity Low_complexity 3 144 0 40263 53 3 4 chrY 12338068 12344213 -39169371 + L1PA3 LINE L1 13 6152 -3 297 219 0 0 chrY 12345875 12345948 -39167636 + (CATATA)n Simple_repeat Simple_repeat 4 76 0 39 22 0 0 chrY 12346878 12346924 -39166660 + AT_rich Low_complexity Low_complexity 1 46 0 28 29 0 0 chrY 12347035 12347070 -39166514 + AT_rich Low_complexity Low_complexity 1 35 0 1020 184 38 19 chrY 12347658 12347870 -39165714 - MER20 DNA MER1_type -3 216 1 299 80 27 27 chrY 12348271 12348346 -39165238 + (TATAA)n Simple_repeat Simple_repeat 5 79 0 741 178 7 30 chrY 12348858 12348993 -39164591 + FLAM_A SINE Alu 1 132 -1 1386 177 17 27 chrY 12349491 12349791 -39163793 - L1PB4 LINE L1 -76 6080 5784 1284 146 46 13 chrY 12349790 12350029 -39163555 + L1PB4 LINE L1 5519 5765 -391 * 2115 98 103 59 chrY 12350040 12350449 -39163135 - LTR49 LTR ERV1 -168 427 1 1567 175 52 14 chrY 12350981 12351272 -39162312 + AluJo SINE Alu 1 302 -10 194 277 198 10 chrY 12351310 12351411 -39162173 + MIR SINE MIR 101 220 -42 234 0 0 0 chrY 12351415 12351441 -39162143 + (TG)n Simple_repeat Simple_repeat 2 27 0 5609 128 10 2 chrY 12351458 12352524 -39161060 + L1PA13 LINE L1 5098 6163 0 1003 144 27 78 chrY 12353177 12353434 -39160150 - L1MD2 LINE L1 0 6359 6116 305 345 71 18 chrY 12353977 12354145 -39159439 + MER5B DNA MER1_type 1 177 -1 443 307 74 62 chrY 12354846 12354995 -39158589 - MIR SINE MIR -4 258 112 1901 124 22 0 chrY 12354995 12355269 -39158315 + AluSx SINE Alu 1 280 -32 252 0 0 0 chrY 12355269 12355297 -39158287 + (CAAAA)n Simple_repeat Simple_repeat 3 30 0 443 307 74 62 chrY 12355297 12355390 -39158194 - MIR SINE MIR -149 113 12 275 228 17 56 chrY 12355475 12355655 -39157929 + (TA)n Simple_repeat Simple_repeat 2 174 0 * 283 203 51 45 chrY 12355590 12355767 -39157817 + (TATATG)n Simple_repeat Simple_repeat 3 180 0 206 318 15 15 chrY 12355899 12355965 -39157619 - MER5B DNA MER1_type -111 67 2 21 0 0 0 chrY 12356660 12356681 -39156903 + AT_rich Low_complexity Low_complexity 1 21 0 277 279 0 13 chrY 12356965 12357044 -39156540 + Charlie2 DNA MER1_type 369 446 -2416 2110 109 7 33 chrY 12357716 12358020 -39155564 - AluSg SINE Alu -14 296 1 312 250 29 70 chrY 12358656 12358928 -39154656 - Charlie7 DNA MER1_type -3 2609 2349 595 332 52 13 chrY 12358951 12359334 -39154250 - Charlie7 DNA MER1_type -1898 714 317 210 191 21 0 chrY 12360181 12360228 -39153356 + T-rich Low_complexity Low_complexity 5 52 0 238 146 0 0 chrY 12360862 12360903 -39152681 - MLT1K LTR MaLR -64 524 484 332 164 15 0 chrY 12362030 12362097 -39151487 + CT-rich Low_complexity Low_complexity 2 69 0 1708 201 3 6 chrY 12362100 12362413 -39151171 - AluJo SINE Alu 0 312 1 2650 137 8 81 chrY 12362422 12362888 -39150696 + MER4B LTR ERV1 1 576 -203 183 42 0 0 chrY 12362888 12362912 -39150672 + (TTATG)n Simple_repeat Simple_repeat 1 24 0 2650 137 8 81 chrY 12362912 12363103 -39150481 + MER4B LTR ERV1 576 779 0 306 0 0 0 chrY 12363545 12363579 -39150005 + (CA)n Simple_repeat Simple_repeat 2 35 0 1077 305 114 54 chrY 12363612 12364967 -39148617 - L1M4 LINE L1 -1692 4454 3019 219 316 7 22 chrY 12365245 12365295 -39148289 + (CATATA)n Simple_repeat Simple_repeat 1 50 -87 1963 155 0 7 chrY 12365295 12365592 -39147992 + AluSx SINE Alu 1 295 -17 219 316 7 22 chrY 12365592 12365680 -39147904 + (CATATA)n Simple_repeat Simple_repeat 50 137 0 570 310 57 62 chrY 12365707 12366146 -39147438 + LTR16C LTR ERVL 51 487 -4 22 0 0 0 chrY 12367341 12367363 -39146221 + AT_rich Low_complexity Low_complexity 1 22 0 1254 95 0 0 chrY 12367613 12367793 -39145791 + (TTTC)n Simple_repeat Simple_repeat 1 359 0 1254 95 0 0 chrY 12367793 12367972 -39145612 + (TTTC)n Simple_repeat Simple_repeat 1 179 0 1252 151 31 9 chrY 12368205 12368430 -39145154 + MER30 DNA MER1_type 1 230 0 2211 92 20 7 chrY 12369180 12369541 -39144043 + AluSp SINE Alu 1 313 0 606 281 120 43 chrY 12371601 12372068 -39141516 + MLT1F1 LTR MaLR 60 562 -5 3223 164 10 92 chrY 12372068 12372337 -39141247 - MER44D DNA MER2_type -1882 705 416 2357 94 32 29 chrY 12372337 12372711 -39140873 + THE1C LTR MaLR 1 375 0 3223 164 10 92 chrY 12372711 12373209 -39140375 - MER44D DNA MER2_type -2171 416 1 275 261 25 84 chrY 12373519 12373602 -39139982 + MIR SINE MIR 80 157 -105 2379 49 0 3 chrY 12373602 12373915 -39139669 + AluY SINE Alu 1 312 0 275 261 25 84 chrY 12373915 12373949 -39139635 + MIR SINE MIR 157 191 -71 203 133 0 0 chrY 12374647 12374677 -39138907 + (TC)n Simple_repeat Simple_repeat 1 30 0 214 301 0 55 chrY 12375708 12375781 -39137803 + L3 LINE CR1 888 956 -621 1556 203 13 23 chrY 12375942 12376242 -39137342 - AluJo SINE Alu -11 301 5 409 309 164 35 chrY 12376375 12376692 -39136892 + L3 LINE CR1 1112 1469 -108 1313 259 73 77 chrY 12377245 12378124 -39135460 + L1MC4 LINE L1 7048 7922 -120 659 182 0 28 chrY 12378231 12378412 -39135172 + (CAGA)n Simple_repeat Simple_repeat 2 177 0 288 130 0 0 chrY 12378446 12378492 -39135092 + (TAGG)n Simple_repeat Simple_repeat 2 47 0 752 173 6 0 chrY 12378493 12378672 -39134912 + (CAGA)n Simple_repeat Simple_repeat 1 180 0 238 77 32 0 chrY 12378673 12378740 -39134844 + (TAGA)n Simple_repeat Simple_repeat 1 69 0 1842 130 11 4 chrY 12378747 12379008 -39134576 + AluSq SINE Alu 1 263 -50 186 103 0 0 chrY 12379019 12379048 -39134536 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 316 242 33 50 chrY 12379063 12379183 -39134401 + L1MC4 LINE L1 7925 8042 0 900 46 33 13 chrY 12380085 12380237 -39133347 + (TTTC)n Simple_repeat Simple_repeat 2 156 0 1960 143 0 13 chrY 12380240 12380540 -39133044 - AluSg SINE Alu -14 296 1 39996 57 1 1 chrY 12380621 12386769 -39126815 + L1PA2 LINE L1 10 6155 0 351 287 143 42 chrY 12386783 12386968 -39126616 + L1MEc LINE L1 1848 2069 -4327 2308 92 7 0 chrY 12386968 12387260 -39126324 - AluSp SINE Alu -19 294 1 351 287 143 42 chrY 12387260 12387339 -39126245 + L1MEc LINE L1 2069 2139 -4257 552 100 0 0 chrY 12387412 12387492 -39126092 + MADE1 DNA Mariner 1 80 0 569 174 8 8 chrY 12387499 12387620 -39125964 + MLT2B2 LTR ERVL 1 121 -394 1924 131 81 0 chrY 12388018 12388301 -39125283 + AluSg SINE Alu 5 310 0 1859 134 87 0 chrY 12388644 12388919 -39124665 - AluSx SINE Alu -13 299 1 208 256 0 0 chrY 12390109 12390152 -39123432 + A-rich Low_complexity Low_complexity 3 45 0 211 336 62 31 chrY 12391333 12391461 -39122123 + MIR SINE MIR 130 261 -1 351 0 0 0 chrY 12391680 12391719 -39121865 + (T)n Simple_repeat Simple_repeat 1 39 0 1925 172 18 18 chrY 12392161 12392562 -39121022 - L1PA16 LINE L1 -2 6164 5764 373 177 0 13 chrY 12392564 12392643 -39120941 - L1P4 LINE L1 -356 5810 5733 343 152 0 0 chrY 12392963 12393029 -39120555 + L1P5 LINE L1 5594 5659 -492 1684 194 0 0 chrY 12393805 12394094 -39119490 + AluJb SINE Alu 1 289 -23 1784 152 9 43 chrY 12394158 12394481 -39119103 + AluJo SINE Alu 1 312 0 23 0 0 0 chrY 12394581 12394604 -39118980 + AT_rich Low_complexity Low_complexity 1 23 0 324 292 19 19 chrY 12394638 12394792 -39118792 + L1MEd LINE L1 1292 1445 -4971 363 265 74 33 chrY 12394792 12395062 -39118522 + L1MEd LINE L1 1300 1662 -4840 1179 247 63 28 chrY 12395073 12395185 -39118399 + L1MEd LINE L1 2837 2944 -3482 2007 143 14 51 chrY 12395185 12395535 -39118049 + MER1B DNA MER1_type 1 337 0 1179 247 63 28 chrY 12395535 12396093 -39117491 + L1MEd LINE L1 2944 3530 -2896 208 182 0 45 chrY 12396102 12396146 -39117438 + GA-rich Low_complexity Low_complexity 1 42 0 29708 40 4 1 chrY 12396169 12400773 -39112811 - L1PA3 LINE L1 -3 6152 1539 4897 84 6 1 chrY 12400782 12401476 -39112108 - L1PA3 LINE L1 -5448 698 2 624 268 168 68 chrY 12401527 12402319 -39111265 + L1MEd LINE L1 3617 4329 -2097 2835 125 9 21 chrY 12402319 12402752 -39110832 - MSTA LTR MaLR 0 428 1 624 268 168 68 chrY 12402752 12402784 -39110800 + L1MEd LINE L1 4329 4356 -2070 368 170 11 21 chrY 12402784 12402878 -39110706 - L1PB1 LINE L1 0 6151 6059 624 268 168 68 chrY 12402878 12402977 -39110607 + L1MEd LINE L1 4356 4444 -1982 1518 72 5 0 chrY 12402977 12403184 -39110400 + L1MA1 LINE L1 6095 6302 0 624 268 168 68 chrY 12403184 12403559 -39110025 + L1MEd LINE L1 4444 5046 -1380 1792 134 33 18 chrY 12404298 12404633 -39108951 - L1MA5A LINE L1 -4 6293 5954 284 166 96 118 chrY 12404761 12404948 -39108636 + MER53 DNA DNA 1 183 -6 240 279 39 16 chrY 12404958 12405087 -39108497 + L1ME2 LINE L1 676 807 -5609 479 316 46 28 chrY 12405355 12405640 -39107944 + L1ME2 LINE L1 5290 5579 -847 1603 268 60 27 chrY 12405660 12406355 -39107229 + L1ME2 LINE L1 5620 6337 -107 2477 106 11 0 chrY 12406449 12406798 -39106786 + THE1A LTR MaLR 1 353 -2 604 94 0 10 chrY 12406800 12406896 -39106688 + THE1A-int LTR MaLR 1 95 -1485 309 310 13 77 chrY 12407229 12407384 -39106200 + L1MC5 LINE L1 7757 7901 -60 1062 154 39 5 chrY 12407437 12407645 -39105939 + L1MB1 LINE L1 5842 6056 -133 1624 177 59 33 chrY 12407646 12408183 -39105401 - MLT2A2 LTR ERVL -6 548 1 387 233 0 33 chrY 12408185 12408305 -39105279 + L1MB1 LINE L1 6053 6168 0 308 302 166 18 chrY 12408371 12408540 -39105044 + MIR3 SINE MIR 1 194 -14 355 197 0 0 chrY 12408593 12408654 -39104930 + L2 LINE L2 3210 3270 -2 1293 280 57 18 chrY 12409378 12409657 -39103927 + MLT2B2 LTR ERVL 1 309 -206 2070 66 69 7 chrY 12409657 12409931 -39103653 - AluY SINE Alu -20 291 1 1293 280 57 18 chrY 12409931 12410147 -39103437 + MLT2B2 LTR ERVL 309 515 0 21 0 0 0 chrY 12411314 12411335 -39102249 + AT_rich Low_complexity Low_complexity 1 21 0 350 232 31 9 chrY 12412214 12412542 -39101042 + (TA)n Simple_repeat Simple_repeat 1 335 0 320 183 29 0 chrY 12412823 12412960 -39100624 + (TA)n Simple_repeat Simple_repeat 1 141 0 188 198 28 9 chrY 12413008 12413114 -39100470 + (TA)n Simple_repeat Simple_repeat 1 108 0 294 295 0 25 chrY 12413603 12413725 -39099859 + CT-rich Low_complexity Low_complexity 1 119 0 184 241 0 29 chrY 12413737 12413907 -39099677 + CT-rich Low_complexity Low_complexity 1 165 0 420 241 0 58 chrY 12413945 12414136 -39099448 + CT-rich Low_complexity Low_complexity 1 180 0 312 211 0 33 chrY 12414152 12414332 -39099252 + CT-rich Low_complexity Low_complexity 4 177 0 241 236 0 30 chrY 12414370 12414535 -39099049 + CT-rich Low_complexity Low_complexity 2 161 0 22 0 0 0 chrY 12415440 12415462 -39098122 + GC_rich Low_complexity Low_complexity 1 22 0 423 0 0 0 chrY 12416001 12416048 -39097536 + (TG)n Simple_repeat Simple_repeat 2 48 0 252 208 15 88 chrY 12416102 12416211 -39097373 - MLT2C1 LTR ERVL -34 430 260 1109 206 30 6 chrY 12416211 12416662 -39096922 + L1M2 LINE L1 5158 5689 -611 27 0 0 0 chrY 12417786 12417813 -39095771 + AT_rich Low_complexity Low_complexity 1 27 0 * 258 222 56 11 chrY 12417805 12417895 -39095689 - L1MB3 LINE L1 -3 6180 6087 * 3559 179 38 52 chrY 12417891 12418911 -39094673 - L1MA4 LINE L1 -280 6020 4987 314 73 0 18 chrY 12418911 12418966 -39094618 + (TTTTG)n Simple_repeat Simple_repeat 2 55 0 3559 179 38 52 chrY 12418966 12418981 -39094603 - L1MA4 LINE L1 -1313 4987 4973 1702 144 4 22 chrY 12418981 12419259 -39094325 - AluSx SINE Alu -39 273 1 3559 179 38 52 chrY 12419259 12419783 -39093801 - L1MA4 LINE L1 -1327 4973 4492 1377 174 33 7 chrY 12419888 12420164 -39093420 + Tigger1 DNA MER2_type 1 283 -2135 345 91 36 0 chrY 12420172 12420227 -39093357 + L1 LINE L1 4711 4767 -1379 634 183 7 39 chrY 12420241 12420394 -39093190 + L1M1 LINE L1 18 165 -7400 1435 77 0 0 chrY 12420401 12420596 -39092988 + THE1A LTR MaLR 1 195 -160 1057 166 0 52 chrY 12421276 12421487 -39092097 - AluSg/x SINE Alu 0 312 113 297 170 0 0 chrY 12421503 12421556 -39092028 + L1M1 LINE L1 113 165 -7400 574 116 0 0 chrY 12421563 12421649 -39091935 + THE1A LTR MaLR 1 86 -269 427 245 49 86 chrY 12421657 12421902 -39091682 - MER84-int LTR ERV1 -1561 4968 4733 463 338 16 24 chrY 12422313 12422695 -39090889 - MER84-int LTR ERV1 -2806 4950 4572 699 330 47 18 chrY 12422932 12423570 -39090014 - MER84-int LTR ERV1 -1114 3840 3304 1099 229 16 12 chrY 12423570 12423823 -39089761 + AluJo SINE Alu 55 308 -4 234 308 44 22 chrY 12423947 12424038 -39089546 - MIR SINE MIR -118 144 52 1971 71 114 11 chrY 12424359 12424639 -39088945 - AluSc SINE Alu 0 309 1 701 23 11 0 chrY 12425610 12425697 -39087887 + (TTTTC)n Simple_repeat Simple_repeat 3 90 0 391 129 114 0 chrY 12425977 12426047 -39087537 + MADE1 DNA Mariner 1 78 -2 204 218 13 77 chrY 12426428 12426506 -39087078 - L2 LINE L2 -78 3235 3163 1446 176 49 73 chrY 12427046 12427416 -39086168 - THE1C LTR MaLR 0 375 15 1065 239 70 16 chrY 12427433 12427802 -39085782 - L1MB7 LINE L1 -83 6101 5713 27 0 0 0 chrY 12427982 12428009 -39085575 + AT_rich Low_complexity Low_complexity 1 27 0 710 300 114 17 chrY 12428091 12428564 -39085020 - L1MC4 LINE L1 -142 7900 7382 8381 71 148 10 chrY 12429192 12430398 -39083186 - SVA Other Other -7 1379 8 189 0 0 0 chrY 12430408 12430429 -39083155 + (GGGAGA)n Simple_repeat Simple_repeat 5 25 0 747 204 22 11 chrY 12430494 12430675 -39082909 - MER20 DNA MER1_type -6 213 31 222 37 0 0 chrY 12431166 12431193 -39082391 + (TG)n Simple_repeat Simple_repeat 2 28 0 351 145 0 0 chrY 12431193 12431262 -39082322 + (TA)n Simple_repeat Simple_repeat 1 69 0 301 303 22 0 chrY 12431262 12431351 -39082233 + L1MC4 LINE L1 6613 6703 -1339 549 174 0 0 chrY 12431351 12431483 -39082101 + (TA)n Simple_repeat Simple_repeat 2 133 0 309 292 22 0 chrY 12431485 12431574 -39082010 - L1MC4 LINE L1 -1337 6705 6615 30 0 0 0 chrY 12431574 12431604 -39081980 + AT_rich Low_complexity Low_complexity 1 30 0 1940 147 0 0 chrY 12432107 12432431 -39081153 - AluSc SINE Alu 0 326 3 198 0 0 0 chrY 12432433 12432455 -39081129 + (T)n Simple_repeat Simple_repeat 1 22 0 198 0 0 0 chrY 12433286 12433308 -39080276 + (A)n Simple_repeat Simple_repeat 1 22 0 895 206 34 0 chrY 12433683 12433887 -39079697 - MER20 DNA MER1_type -8 211 1 23 0 0 0 chrY 12434553 12434576 -39079008 + AT_rich Low_complexity Low_complexity 1 23 0 2100 86 3 7 chrY 12434604 12434896 -39078688 + AluY SINE Alu 20 310 -1 2502 58 0 6 chrY 12434910 12435223 -39078361 + AluY SINE Alu 1 311 0 1391 231 156 65 chrY 12435294 12435896 -39077688 - L1MC4 LINE L1 -198 7844 7153 1613 177 7 10 chrY 12435896 12436184 -39077400 - AluJo SINE Alu 0 312 26 1391 231 156 65 chrY 12436184 12436364 -39077220 - L1MC4 LINE L1 -889 7153 6991 483 63 0 0 chrY 12436873 12436936 -39076648 + (TTTC)n Simple_repeat Simple_repeat 2 64 0 370 283 178 13 chrY 12438202 12438354 -39075230 - MER5B DNA MER1_type 0 178 2 233 209 0 0 chrY 12438410 12438453 -39075131 + (TG)n Simple_repeat Simple_repeat 2 44 0 200 356 0 0 chrY 12438935 12438994 -39074590 - MIR SINE MIR -71 137 79 498 169 90 0 chrY 12439314 12439403 -39074181 + AluJ/FLAM SINE Alu 3 99 -213 563 217 7 36 chrY 12439404 12439542 -39074042 + FRAM SINE Alu 1 40 0 392 138 0 15 chrY 12439642 12439707 -39073877 + MER20 DNA MER1_type 2 65 -154 22 0 0 0 chrY 12439973 12439995 -39073589 + AT_rich Low_complexity Low_complexity 1 22 0 251 273 16 0 chrY 12440504 12440584 -39073000 + MLT2C1 LTR ERVL 124 194 -203 278 263 12 25 chrY 12440584 12440664 -39072920 + GA-rich Low_complexity Low_complexity 2 80 0 238 135 0 0 chrY 12440830 12440867 -39072717 - MLT1E3 LTR MaLR -500 124 88 227 233 151 0 chrY 12440832 12440905 -39072679 - MLT2C1 LTR ERVL -296 101 18 * 1057 139 42 28 chrY 12440910 12441126 -39072458 - THE1C LTR MaLR -156 219 1 362 305 61 12 chrY 12441150 12441314 -39072270 - L1 LINE L1 -1793 4353 4182 40140 39 26 2 chrY 12441325 12447329 -39066255 + L1PA2 LINE L1 3 6155 0 1871 112 0 83 chrY 12447864 12448177 -39065407 - AluSc SINE Alu -22 287 1 285 154 0 31 chrY 12449127 12449192 -39064392 - MLT2B3 LTR ERVL 0 520 458 809 109 36 0 chrY 12449209 12449374 -39064210 + (TAGA)n Simple_repeat Simple_repeat 2 172 0 1673 231 24 50 chrY 12449431 12449972 -39063612 - MLT2B3 LTR ERVL -20 515 18 244 330 52 17 chrY 12450551 12450666 -39062918 + L2 LINE L2 3154 3272 0 1926 136 4 0 chrY 12450930 12451202 -39062382 + AluSc SINE Alu 1 273 -36 369 0 0 0 chrY 12451209 12451250 -39062334 + (TAAA)n Simple_repeat Simple_repeat 1 41 0 1340 199 30 24 chrY 12451342 12451451 -39062133 + AluJb SINE Alu 12 119 -193 276 30 0 0 chrY 12451451 12451484 -39062100 + (CA)n Simple_repeat Simple_repeat 2 34 0 1340 199 30 24 chrY 12451484 12451671 -39061913 + AluJb SINE Alu 119 310 -2 1871 112 0 83 chrY 12452139 12452452 -39061132 + AluSc SINE Alu 1 287 -22 40180 39 26 2 chrY 12452987 12458992 -39054592 - L1PA2 LINE L1 0 6155 3 362 305 61 12 chrY 12459003 12459167 -39054417 + L1 LINE L1 4182 4353 -1793 1057 139 42 28 chrY 12459191 12459407 -39054177 + THE1C LTR MaLR 1 219 -156 227 233 151 0 chrY 12459412 12459485 -39054099 + MLT2C1 LTR ERVL 18 101 -296 * 238 135 0 0 chrY 12459450 12459487 -39054097 + MLT1E3 LTR MaLR 88 124 -500 278 263 12 25 chrY 12459653 12459733 -39053851 + CT-rich Low_complexity Low_complexity 2 80 0 251 273 16 0 chrY 12459733 12459813 -39053771 - MLT2C1 LTR ERVL -203 194 124 22 0 0 0 chrY 12460322 12460344 -39053240 + AT_rich Low_complexity Low_complexity 1 22 0 392 138 0 15 chrY 12460610 12460675 -39052909 - MER20 DNA MER1_type -154 65 2 563 217 7 36 chrY 12460775 12460913 -39052671 - FRAM SINE Alu 0 40 1 498 169 90 0 chrY 12460914 12461003 -39052581 - AluJ/FLAM SINE Alu -213 99 3 200 356 0 0 chrY 12461323 12461382 -39052202 + MIR SINE MIR 79 137 -71 233 209 0 0 chrY 12461864 12461907 -39051677 + (CA)n Simple_repeat Simple_repeat 2 44 0 370 283 178 13 chrY 12461963 12462115 -39051469 + MER5B DNA MER1_type 2 178 0 483 63 0 0 chrY 12463381 12463444 -39050140 + (GAAA)n Simple_repeat Simple_repeat 2 64 0 1391 231 156 65 chrY 12463953 12464133 -39049451 + L1MC4 LINE L1 6991 7153 -889 1613 177 7 10 chrY 12464133 12464421 -39049163 + AluJo SINE Alu 26 312 0 1391 231 156 65 chrY 12464421 12465023 -39048561 + L1MC4 LINE L1 7153 7844 -198 2502 58 0 6 chrY 12465094 12465407 -39048177 - AluY SINE Alu 0 311 1 2100 86 3 7 chrY 12465421 12465713 -39047871 - AluY SINE Alu -1 310 20 23 0 0 0 chrY 12465741 12465764 -39047820 + AT_rich Low_complexity Low_complexity 1 23 0 895 206 34 0 chrY 12466430 12466634 -39046950 + MER20 DNA MER1_type 1 211 -8 198 0 0 0 chrY 12467009 12467031 -39046553 + (T)n Simple_repeat Simple_repeat 1 22 0 198 0 0 0 chrY 12467862 12467884 -39045700 + (A)n Simple_repeat Simple_repeat 1 22 0 1941 147 0 0 chrY 12467886 12468165 -39045419 + AluSc SINE Alu 3 326 0 385 22 0 0 chrY 12468165 12468210 -39045374 + (TAAA)n Simple_repeat Simple_repeat 2 96 0 30 0 0 0 chrY 12468713 12468743 -39044841 + AT_rich Low_complexity Low_complexity 1 30 0 * 422 129 12 0 chrY 12468719 12468804 -39044780 + (TA)n Simple_repeat Simple_repeat 2 87 0 309 292 22 0 chrY 12468743 12468832 -39044752 + L1MC4 LINE L1 6615 6705 -1337 * 885 161 0 0 chrY 12468834 12469093 -39044491 + (TA)n Simple_repeat Simple_repeat 1 259 0 24 32 0 0 chrY 12469093 12469124 -39044460 + AT_rich Low_complexity Low_complexity 1 31 0 222 37 0 0 chrY 12469124 12469151 -39044433 + (CA)n Simple_repeat Simple_repeat 2 28 0 747 204 22 11 chrY 12469642 12469823 -39043761 + MER20 DNA MER1_type 31 213 -6 189 0 0 0 chrY 12469888 12469909 -39043675 + (TCTCCC)n Simple_repeat Simple_repeat 5 25 0 8381 71 148 10 chrY 12469919 12471125 -39042459 + SVA Other Other 8 1379 -7 710 300 114 17 chrY 12471753 12472226 -39041358 + L1MC4 LINE L1 7382 7900 -142 27 0 0 0 chrY 12472308 12472335 -39041249 + AT_rich Low_complexity Low_complexity 1 27 0 1065 239 70 16 chrY 12472515 12472884 -39040700 + L1MB7 LINE L1 5713 6101 -83 1446 176 49 73 chrY 12472901 12473271 -39040313 + THE1C LTR MaLR 15 375 0 204 218 13 77 chrY 12473811 12473889 -39039695 + L2 LINE L2 3163 3235 -78 391 129 114 0 chrY 12474270 12474340 -39039244 - MADE1 DNA Mariner -2 78 1 701 23 11 0 chrY 12474620 12474707 -39038877 + (GAAAA)n Simple_repeat Simple_repeat 3 90 0 1971 71 114 11 chrY 12475678 12475958 -39037626 + AluSc SINE Alu 1 309 0 234 308 44 22 chrY 12476279 12476370 -39037214 + MIR SINE MIR 52 144 -118 1099 229 16 12 chrY 12476494 12476747 -39036837 - AluJo SINE Alu -4 308 55 699 330 47 18 chrY 12476747 12477385 -39036199 + HERVFH21 LTR ERV1 3304 4630 -1114 484 345 13 21 chrY 12477622 12478004 -39035580 + HERVFH21 LTR ERV1 4572 4950 -2806 427 245 49 86 chrY 12478415 12478660 -39034924 + HERVFH21 LTR ERV1 4733 4968 -1561 574 116 0 0 chrY 12478668 12478754 -39034830 - THE1A LTR MaLR -269 86 1 297 170 0 0 chrY 12478761 12478814 -39034770 - L1M1 LINE L1 -7400 165 113 1057 166 0 52 chrY 12478830 12479041 -39034543 + AluSg/x SINE Alu 113 312 0 1435 77 0 0 chrY 12479721 12479916 -39033668 - THE1A LTR MaLR -160 195 1 634 183 7 39 chrY 12479923 12480076 -39033508 - L1M1 LINE L1 -7400 165 18 345 91 36 0 chrY 12480090 12480145 -39033439 - L1 LINE L1 -1379 4767 4711 1377 174 33 7 chrY 12480153 12480429 -39033155 - Tigger1 DNA MER2_type -2135 283 1 3559 179 38 52 chrY 12480534 12481058 -39032526 + L1MA4 LINE L1 4492 5022 -1278 1702 144 4 22 chrY 12481058 12481336 -39032248 + AluSx SINE Alu 1 273 -39 3559 179 38 52 chrY 12481336 12481351 -39032233 + L1MA4 LINE L1 5022 5036 -1264 314 73 0 18 chrY 12481351 12481406 -39032178 + (CAAAA)n Simple_repeat Simple_repeat 2 55 0 3559 179 38 52 chrY 12481406 12482426 -39031158 + L1MA4 LINE L1 5036 6020 -280 258 222 56 11 chrY 12482422 12482512 -39031072 + L1MB3 LINE L1 6087 6180 -3 * 1109 191 36 2 chrY 12483655 12484106 -39029478 - L1M2 LINE L1 -611 5689 5158 252 208 15 88 chrY 12484106 12484215 -39029369 + MLT2C1 LTR ERVL 260 430 -34 423 0 0 0 chrY 12484269 12484316 -39029268 + (CA)n Simple_repeat Simple_repeat 2 48 0 22 0 0 0 chrY 12484855 12484877 -39028707 + GC_rich Low_complexity Low_complexity 1 22 0 241 236 0 30 chrY 12485782 12485947 -39027637 + GA-rich Low_complexity Low_complexity 2 161 0 312 211 0 33 chrY 12485985 12486165 -39027419 + GA-rich Low_complexity Low_complexity 4 177 0 420 241 0 58 chrY 12486181 12486372 -39027212 + GA-rich Low_complexity Low_complexity 1 180 0 184 241 0 29 chrY 12486410 12486580 -39027004 + GA-rich Low_complexity Low_complexity 1 165 0 294 295 0 25 chrY 12486592 12486714 -39026870 + GA-rich Low_complexity Low_complexity 1 119 0 263 171 27 9 chrY 12487204 12487315 -39026269 + (TA)n Simple_repeat Simple_repeat 1 113 0 335 220 17 17 chrY 12487359 12487477 -39026107 + (TA)n Simple_repeat Simple_repeat 1 118 0 25 0 0 0 chrY 12488748 12488773 -39024811 + AT_rich Low_complexity Low_complexity 1 25 0 320 343 131 7 chrY 12490509 12490646 -39022938 - L2 LINE L2 -2 3270 3117 1967 163 0 3 chrY 12491943 12492249 -39021335 - AluSq SINE Alu -8 305 1 246 307 71 24 chrY 12492289 12492416 -39021168 + MER94 DNA DNA 2 134 0 290 337 90 6 chrY 12492924 12493102 -39020482 + MIR SINE MIR 44 236 -26 218 237 32 21 chrY 12493107 12493200 -39020384 + (CTA)n Simple_repeat Simple_repeat 1 94 0 1957 179 8 19 chrY 12493223 12493592 -39019992 + MLT1A1 LTR MaLR 1 365 0 1679 165 45 48 chrY 12493611 12493644 -39019940 - THE1C LTR MaLR 0 375 343 1714 178 0 0 chrY 12493644 12493925 -39019659 + AluSx SINE Alu 16 296 -16 1679 165 45 48 chrY 12493925 12494267 -39019317 - THE1C LTR MaLR -32 343 1 274 365 37 23 chrY 12494553 12494852 -39018732 + LTR16B LTR ERVL 37 339 -125 21 0 0 0 chrY 12494943 12494964 -39018620 + AT_rich Low_complexity Low_complexity 1 21 0 209 309 32 21 chrY 12495494 12495588 -39017996 - MIR SINE MIR -26 236 142 277 304 70 9 chrY 12495692 12495807 -39017777 - MIR SINE MIR -34 228 107 1885 174 10 58 chrY 12495808 12496205 -39017379 - MER83B LTR ERV1 0 378 1 769 225 34 10 chrY 12496205 12496414 -39017170 + L1MA1 LINE L1 18 231 -7334 2144 171 14 2 chrY 12496479 12496917 -39016667 + L1MA1 LINE L1 5515 5957 -1608 5639 160 20 14 chrY 12497088 12498117 -39015467 + L1MA1 LINE L1 5985 7031 -690 2043 122 0 13 chrY 12498117 12498420 -39015164 + AluY SINE Alu 1 299 -12 5639 160 20 14 chrY 12498420 12499115 -39014469 + L1MA1 LINE L1 7031 7720 -1 445 185 12 0 chrY 12499136 12499217 -39014367 - MIR SINE MIR -133 129 48 22 80 0 0 chrY 12499343 12499393 -39014191 + AT_rich Low_complexity Low_complexity 1 50 0 1856 163 3 0 chrY 12499613 12499896 -39013688 - AluSc SINE Alu -13 296 13 234 263 38 0 chrY 12500564 12500644 -39012940 + MARNA DNA Mariner 485 567 -19 22 0 0 0 chrY 12500696 12500718 -39012866 + AT_rich Low_complexity Low_complexity 1 22 0 2066 142 3 0 chrY 12501224 12501519 -39012065 - AluY SINE Alu -15 296 1 715 149 50 0 chrY 12502743 12502904 -39010680 - L1MA8 LINE L1 -3 6288 6120 291 264 14 0 chrY 12503162 12503234 -39010350 + MER45 DNA AcHobo 1 73 -880 326 214 8 103 chrY 12503242 12503306 -39010278 - MER45 DNA AcHobo -855 185 135 2519 56 0 0 chrY 12503306 12503634 -39009950 + AluY SINE Alu 1 311 0 326 214 8 103 chrY 12503634 12503686 -39009898 - MER45 DNA AcHobo -905 135 80 1692 168 22 32 chrY 12504157 12504526 -39009058 + MLT1A1 LTR MaLR 1 365 0 183 161 32 16 chrY 12504575 12504637 -39008947 + (TA)n Simple_repeat Simple_repeat 2 64 0 225 94 0 0 chrY 12505079 12505111 -39008473 + (T)n Simple_repeat Simple_repeat 1 32 0 214 383 92 0 chrY 12505983 12506124 -39007460 + L2 LINE L2 3117 3270 -2 209 284 75 0 chrY 12506272 12506339 -39007245 - L2 LINE L2 -12 3301 3230 691 229 0 0 chrY 12506384 12506515 -39007069 - FLAM_A SINE Alu -11 131 1 684 113 0 0 chrY 12506609 12506706 -39006878 + AluSc SINE Alu 1 97 -212 307 106 0 0 chrY 12506708 12506755 -39006829 - AluSq/x SINE Alu -161 142 96 1310 247 108 20 chrY 12508085 12508531 -39005053 - MLT1D LTR MaLR 0 505 21 220 336 36 18 chrY 12508737 12508847 -39004737 + L2 LINE L2 3197 3308 -5 370 319 56 0 chrY 12508850 12508994 -39004590 + MIR SINE MIR 40 191 -71 2149 132 0 6 chrY 12509539 12509850 -39003734 - AluY SINE Alu -2 309 1 1862 169 3 3 chrY 12510670 12510966 -39002618 - AluSx SINE Alu -16 296 1 319 266 44 9 chrY 12511520 12511633 -39001951 + L2 LINE L2 3197 3313 0 991 258 21 74 chrY 12511872 12512400 -39001184 + MLT1D LTR MaLR 1 500 -5 616 164 8 41 chrY 12513072 12513194 -39000390 + THE1C LTR MaLR 64 181 -194 32 0 0 0 chrY 12513465 12513497 -39000087 + AT_rich Low_complexity Low_complexity 1 32 0 678 274 6 0 chrY 12513611 12513779 -38999805 + MER45A DNA AcHobo 10 178 0 34 0 0 0 chrY 12516616 12516650 -38996934 + AT_rich Low_complexity Low_complexity 1 34 0 207 100 0 0 chrY 12516673 12516703 -38996881 + (TTCA)n Simple_repeat Simple_repeat 1 30 0 765 308 85 6 chrY 12517163 12517527 -38996057 +