1020 143 0 0 chrX 1 148 -162599782 + AluSp/q SINE Alu 156 302 -11 1323 193 97 65 chrX 402 518 -162599412 + MER65C LTR ERV1 2 113 -348 2015 128 14 0 chrX 518 800 -162599130 + AluSx SINE Alu 1 286 -26 1323 193 97 65 chrX 800 1114 -162598816 + MER65C LTR ERV1 113 446 -15 2054 125 18 0 chrX 1203 1505 -162598425 - AluSg SINE Alu 0 307 1 306 50 0 0 chrX 1531 1571 -162598359 + (TG)n Simple_repeat Simple_repeat 2 41 0 2473 168 46 26 chrX 1662 2094 -162597836 - Tigger3(Golem) DNA MER2_type -10 3019 2574 2126 134 0 0 chrX 2094 2392 -162597538 - AluSx SINE Alu -14 298 1 2473 168 46 26 chrX 2392 2458 -162597472 - Tigger3(Golem) DNA MER2_type -455 2574 2511 1464 193 64 10 chrX 2458 2754 -162597176 + AluJb SINE Alu 1 312 0 1895 137 20 13 chrX 2846 3145 -162596785 - AluSx SINE Alu -11 301 1 1389 332 88 36 chrX 3743 4010 -162595920 + MER4-int LTR ERV1 5633 5885 -1237 1997 140 0 10 chrX 4010 4336 -162595594 + AluSc SINE Alu 1 309 0 1389 332 88 36 chrX 4336 5067 -162594863 + MER4-int LTR ERV1 5885 6683 -439 257 210 0 32 chrX 5281 5343 -162594587 + MER4-int LTR ERV1 4185 4244 -2354 537 287 71 35 chrX 5389 5643 -162594287 + LTR47B LTR ERVL 51 313 -130 518 126 0 0 chrX 5646 5733 -162594197 + AluSp/q SINE Alu 222 308 -5 471 258 39 7 chrX 5738 5893 -162594037 + MER39 LTR ERV1 537 696 -11 190 253 0 80 chrX 9263 9338 -162590592 - L2 LINE L2 -1 3271 3203 1237 206 11 11 chrX 10603 10870 -162589060 - L1MB5 LINE L1 -77 6097 5831 349 234 156 44 chrX 13444 13649 -162586281 + LTR37A LTR ERV1 197 424 -2 288 228 89 41 chrX 14221 14289 -162585641 - L1ME3 LINE L1 -166 5996 5933 2218 139 94 54 chrX 14289 14755 -162585175 + MER31A LTR ERV1 1 485 0 288 228 89 41 chrX 14755 14809 -162585121 - L1ME3 LINE L1 -229 5933 5868 953 206 46 27 chrX 14850 15112 -162584818 - L1MA8 LINE L1 -65 6226 5960 454 245 20 0 chrX 15112 15214 -162584716 - U6 snRNA snRNA 0 107 4 367 299 7 28 chrX 15243 15387 -162584543 - L1ME3 LINE L1 -403 5767 5627 275 263 59 51 chrX 15581 15699 -162584231 + MIR SINE MIR 20 138 -124 2456 87 3 0 chrX 15821 16131 -162583799 + AluY SINE Alu 1 311 0 22 0 0 0 chrX 16438 16460 -162583470 + AT_rich Low_complexity Low_complexity 1 22 0 372 259 121 50 chrX 16511 16687 -162583243 - L1ME2 LINE L1 -37 6127 5928 2373 78 3 0 chrX 16687 16983 -162582947 - AluY SINE Alu -14 297 1 372 259 121 50 chrX 16983 17045 -162582885 - L1ME2 LINE L1 -236 5928 5872 948 260 71 0 chrX 17053 17361 -162582569 - L1ME2 LINE L1 -370 5794 5465 564 260 50 10 chrX 17724 17924 -162582006 + MER67C LTR ERV1 34 241 -469 4469 101 23 14 chrX 17948 18180 -162581750 - PABL_A LTR ERV1 -2 658 430 2521 56 0 3 chrX 18180 18485 -162581445 - AluY SINE Alu -7 304 1 4469 101 23 14 chrX 18485 18904 -162581026 - PABL_A LTR ERV1 -230 430 1 652 111 0 10 chrX 18942 19041 -162580889 + MER4A LTR ERV1 1 98 -566 444 189 7 45 chrX 19041 19189 -162580741 + MER4A LTR ERV1 261 461 -203 2055 112 35 0 chrX 19229 19515 -162580415 - AluSg SINE Alu -14 296 1 24 32 0 0 chrX 19523 19554 -162580376 + AT_rich Low_complexity Low_complexity 1 31 0 227 30 0 30 chrX 19748 19781 -162580149 + (TTTTC)n Simple_repeat Simple_repeat 4 35 0 1048 181 4 75 chrX 19929 20017 -162579913 - MER2 DNA MER2_type -135 210 117 2231 120 0 0 chrX 20017 20317 -162579613 + AluSx SINE Alu 1 300 -12 1048 181 4 75 chrX 20317 20454 -162579476 - MER2 DNA MER2_type -228 117 1 189 0 0 0 chrX 20554 20575 -162579355 + (TTA)n Simple_repeat Simple_repeat 2 22 0 875 156 28 0 chrX 20615 20756 -162579174 - AluSg/x SINE Alu -15 297 153 274 254 67 22 chrX 20757 20891 -162579039 - L1ME2 LINE L1 -1031 5115 4976 1994 122 42 7 chrX 20898 21186 -162578744 + AluSx SINE Alu 1 298 -14 1994 142 13 10 chrX 21390 21701 -162578229 - AluJo SINE Alu 0 312 1 1161 39 0 0 chrX 22054 22183 -162577747 - AluY SINE Alu -182 129 1 1131 164 0 11 chrX 22340 22529 -162577401 - AluJb SINE Alu -3 309 123 1577 63 5 15 chrX 23091 23297 -162576633 - AluYa5 SINE Alu -9 302 99 3993 74 18 7 chrX 23297 23849 -162576081 + LTR6B LTR ERV1 1 558 0 904 40 0 0 chrX 23850 23951 -162575979 - AluYa5 SINE Alu -210 101 1 2428 106 0 0 chrX 23967 24279 -162575651 - AluSx SINE Alu 0 312 1 3776 194 19 4 chrX 24312 25065 -162574865 - L1MB5 LINE L1 -6 6168 5405 198 71 0 0 chrX 25622 25650 -162574280 + (TTCA)n Simple_repeat Simple_repeat 1 28 0 1116 144 0 2 chrX 26109 26469 -162573461 + (TTCC)n Simple_repeat Simple_repeat 1 540 0 653 220 9 9 chrX 26474 26832 -162573098 + CT-rich Low_complexity Low_complexity 1 358 0 252 188 25 12 chrX 26856 26936 -162572994 + CT-rich Low_complexity Low_complexity 4 84 0 2628 206 31 4 chrX 27258 27803 -162572127 - L1MB5 LINE L1 0 6174 5615 1620 190 3 31 chrX 28837 29158 -162570772 + AluJo SINE Alu 1 312 0 1370 188 22 4 chrX 29588 29860 -162570070 - L1MB5 LINE L1 -89 6085 5809 463 247 159 12 chrX 30006 30176 -162569754 + MLT1J2 LTR MaLR 256 450 0 2253 124 0 0 chrX 31199 31505 -162568425 - AluSx SINE Alu -6 306 1 3191 142 18 63 chrX 32873 33126 -162566804 + MER39B LTR ERV1 2 265 -388 2582 53 0 3 chrX 33126 33428 -162566502 + AluY SINE Alu 1 301 -10 3191 142 18 63 chrX 33428 33546 -162566384 + MER39B LTR ERV1 265 387 -266 2410 80 0 0 chrX 33546 33834 -162566096 + AluSc SINE Alu 1 288 -21 3191 142 18 63 chrX 33834 34115 -162565815 + MER39B LTR ERV1 387 626 -27 324 70 0 0 chrX 34568 34611 -162565319 + (TTCC)n Simple_repeat Simple_repeat 2 44 0 1892 150 0 17 chrX 34611 34911 -162565019 - AluSg SINE Alu -15 295 1 2071 143 0 0 chrX 34911 35219 -162564711 - AluSx SINE Alu -4 308 1 3580 136 11 0 chrX 35537 36080 -162563850 - MER41A LTR ERV1 0 554 6 3351 164 46 89 chrX 36085 36665 -162563265 - LTR39 LTR ERV1 -8 775 238 1939 135 10 10 chrX 36665 36953 -162562977 + AluSx SINE Alu 1 288 -24 3351 164 46 89 chrX 36953 37182 -162562748 - LTR39 LTR ERV1 -545 238 1 285 278 21 10 chrX 37936 38033 -162561897 - MER5A DNA MER1_type -86 103 6 1276 178 9 0 chrX 38042 38272 -162561658 - MLT1B LTR MaLR -1 389 158 1131 175 5 24 chrX 38272 38509 -162561421 - MLT1B LTR MaLR 0 467 159 2175 167 8 13 chrX 38510 38899 -162561031 - MLT1B LTR MaLR 0 390 4 1956 195 4 30 chrX 38928 39222 -162560708 - MLT1B LTR MaLR 0 396 111 2283 70 33 33 chrX 39222 39524 -162560406 - AluY SINE Alu -9 302 1 1956 195 4 30 chrX 39524 39633 -162560297 - MLT1B LTR MaLR -285 111 1 1005 97 0 156 chrX 39786 39972 -162559958 - AluSg/x SINE Alu -18 292 136 773 254 46 0 chrX 40670 40867 -162559063 - MER20 DNA MER1_type 0 219 14 641 141 19 6 chrX 40883 41039 -162558891 + (TAGA)n Simple_repeat Simple_repeat 4 161 0 298 192 39 39 chrX 41050 41154 -162558776 + (TAGA)n Simple_repeat Simple_repeat 4 107 0 671 112 9 19 chrX 91155 91262 -162508668 + MLT1A1 LTR MaLR 260 365 0 1400 147 4 0 chrX 91262 91493 -162508437 + MLT1B LTR MaLR 158 389 -1 551 211 265 0 chrX 91494 91679 -162508251 + L1MB4 LINE L1 5906 6139 -41 1872 146 0 23 chrX 91684 91985 -162507945 - AluJo SINE Alu -15 297 4 3752 130 0 8 chrX 92588 93117 -162506813 + MER1A DNA MER1_type 3 527 0 1909 174 3 0 chrX 93274 93562 -162506368 + AluJb SINE Alu 2 290 -22 2210 121 3 0 chrX 93599 93896 -162506034 + AluSq SINE Alu 1 298 -15 905 115 0 8 chrX 93896 94026 -162505904 + AluSg/x SINE Alu 160 288 -24 258 32 0 0 chrX 94062 94093 -162505837 + (TG)n Simple_repeat Simple_repeat 1 31 0 903 136 34 20 chrX 94094 94241 -162505689 - AluSq/x SINE Alu -163 149 1 204 40 0 0 chrX 94340 94365 -162505565 + (T)n Simple_repeat Simple_repeat 1 25 0 2531 63 0 0 chrX 94390 94689 -162505241 - AluY SINE Alu -12 299 1 189 0 0 0 chrX 94720 94741 -162505189 + (A)n Simple_repeat Simple_repeat 1 21 0 2171 105 3 7 chrX 95192 95509 -162504421 - AluSx SINE Alu 0 316 1 783 126 0 77 chrX 95748 95891 -162504039 - FLAM_C SINE Alu -1 132 1 21 57 0 0 chrX 95897 95932 -162503998 + AT_rich Low_complexity Low_complexity 1 35 0 1505 128 8 16 chrX 95948 96198 -162503732 - L1MC1 LINE L1 0 6333 6086 235 281 45 0 chrX 96226 96315 -162503615 + L1MEc LINE L1 1262 1354 -5042 2142 144 0 0 chrX 96675 96981 -162502949 + AluSx SINE Alu 1 306 -6 22 0 0 0 chrX 97053 97075 -162502855 + AT_rich Low_complexity Low_complexity 1 22 0 2358 112 49 0 chrX 97300 97352 -162502578 - THE1B LTR MaLR 0 364 316 2366 70 0 7 chrX 97352 97639 -162502291 - AluY SINE Alu -11 300 16 2358 112 49 0 chrX 97639 97933 -162501997 - THE1B LTR MaLR -48 316 1 402 336 24 24 chrX 98140 98390 -162501540 + L1MEc LINE L1 2302 2551 -3664 885 150 0 0 chrX 98397 98530 -162501400 + FLAM_C SINE Alu 1 133 0 2042 133 20 3 chrX 98889 99190 -162500740 - AluSx SINE Alu -6 306 1 369 0 0 0 chrX 99938 99979 -162499951 + (TG)n Simple_repeat Simple_repeat 2 42 0 195 42 0 0 chrX 100461 100485 -162499445 + (TTTA)n Simple_repeat Simple_repeat 1 24 0 3532 65 5 0 chrX 100537 100982 -162498948 + L1PA10 LINE L1 5718 6164 -4 2003 134 35 15 chrX 101147 101490 -162498440 + L1PB4 LINE L1 5804 6153 -3 188 61 61 0 chrX 101734 101767 -162498163 + T-rich Low_complexity Low_complexity 2 36 0 1827 169 0 19 chrX 102024 102442 -162497488 + AluJb SINE Alu 1 412 0 367 73 36 0 chrX 102495 102550 -162497380 - Alu SINE Alu -5 297 241 319 193 23 11 chrX 102556 102644 -162497286 + CT-rich Low_complexity Low_complexity 4 92 0 1771 181 0 7 chrX 102647 102951 -162496979 - AluJb SINE Alu -10 302 1 2209 173 18 3 chrX 103012 103394 -162496536 + MLT1B LTR MaLR 3 390 0 1346 167 116 29 chrX 103475 103709 -162496221 - AluJo SINE Alu -13 299 36 5044 94 0 0 chrX 103709 104369 -162495561 + PABL_A LTR ERV1 1 660 0 1346 167 116 29 chrX 104369 104409 -162495521 - AluJo SINE Alu -276 36 1 247 264 16 48 chrX 104709 104834 -162495096 + L1ME LINE L1 5691 5811 -359 785 153 0 0 chrX 105242 105360 -162494570 + FLAM_C SINE Alu 1 118 -15 1156 203 14 22 chrX 105383 105605 -162494325 + AluJo SINE Alu 1 220 -92 290 118 0 39 chrX 105605 105656 -162494274 + AluSq/x SINE Alu 86 134 -169 32 26 0 0 chrX 105656 105695 -162494235 + AT_rich Low_complexity Low_complexity 1 39 0 978 137 27 0 chrX 105705 105888 -162494042 + L1MA4 LINE L1 6107 6294 -6 2113 117 0 0 chrX 105906 106188 -162493742 - AluSx SINE Alu -30 282 1 23 0 0 0 chrX 106195 106218 -162493712 + AT_rich Low_complexity Low_complexity 1 23 0 558 229 12 59 chrX 107121 107291 -162492639 - MER20 DNA MER1_type -42 177 16 1702 174 35 0 chrX 107363 107485 -162492445 + AluJo SINE Alu 1 117 -195 186 43 0 0 chrX 107485 107508 -162492422 + (TAAAA)n Simple_repeat Simple_repeat 3 25 0 1702 174 35 0 chrX 107508 107672 -162492258 + AluJo SINE Alu 117 297 -15 28 29 0 0 chrX 107838 107873 -162492057 + AT_rich Low_complexity Low_complexity 1 35 0 21 36 0 0 chrX 108219 108247 -162491683 + AT_rich Low_complexity Low_complexity 1 28 0 349 246 118 43 chrX 108631 108818 -162491112 + L1ME1 LINE L1 5736 5936 -230 2486 85 0 3 chrX 109572 109879 -162490051 - AluSg SINE Alu -4 306 1 2361 95 3 0 chrX 110111 110416 -162489514 - AluSp SINE Alu -7 306 1 616 155 35 113 chrX 110649 110791 -162489139 + FLAM_C SINE Alu 2 132 -11 5024 109 7 0 chrX 110815 111530 -162488400 + L1PA11 LINE L1 5445 6164 -10 2057 135 0 22 chrX 111533 111819 -162488111 + AluSx SINE Alu 1 281 -31 189 0 0 0 chrX 111819 111840 -162488090 + (TAAA)n Simple_repeat Simple_repeat 2 22 0 2057 135 0 22 chrX 111840 111872 -162488058 + AluSx SINE Alu 281 312 0 2727 28 9 0 chrX 111939 112258 -162487672 + L1PA4 LINE L1 5831 6152 -3 24 53 0 0 chrX 112258 112296 -162487634 + AT_rich Low_complexity Low_complexity 1 38 0 1958 141 3 13 chrX 112731 113030 -162486900 + AluSq SINE Alu 18 313 0 257 75 25 0 chrX 113063 113103 -162486827 + (GAA)n Simple_repeat Simple_repeat 2 42 0 262 228 0 0 chrX 113120 113177 -162486753 - MIR SINE MIR -146 116 60 1351 190 52 14 chrX 113282 113415 -162486515 + AluJo SINE Alu 3 129 -183 2160 110 14 0 chrX 113415 113705 -162486225 + AluSx SINE Alu 1 294 -18 1351 190 52 14 chrX 113705 113860 -162486070 + AluJo SINE Alu 129 302 -10 445 172 16 0 chrX 113944 114066 -162485864 + (TCTA)n Simple_repeat Simple_repeat 2 125 0 256 100 0 40 chrX 114070 114120 -162485810 + MLT2B1 LTR ERVL 458 505 -15 581 208 32 19 chrX 114153 114307 -162485623 + L1M4 LINE L1 5071 5226 -920 550 195 140 30 chrX 114870 115034 -162484896 + MLT1C LTR MaLR 1 182 -285 546 242 73 28 chrX 115080 115258 -162484672 + MLT1C LTR MaLR 172 357 -110 1846 150 10 30 chrX 115279 115579 -162484351 + AluJb SINE Alu 1 294 -18 768 170 0 7 chrX 115678 115813 -162484117 + FRAM SINE Alu 42 175 -1 310 339 0 17 chrX 115926 116041 -162483889 - MER5A DNA MER1_type 0 189 77 813 181 0 8 chrX 116093 116226 -162483704 - FLAM_C SINE Alu -1 132 1 272 253 0 44 chrX 116344 116435 -162483495 - L1MC4 LINE L1 -13 8029 7943 2197 138 43 0 chrX 116507 116856 -162483074 - THE1B LTR MaLR 0 364 1 10878 107 36 1 chrX 116856 118382 -162481548 - THE1B-int LTR MaLR 0 1580 1 2352 133 23 0 chrX 118382 118736 -162481194 - THE1B LTR MaLR 0 364 3 882 153 0 14 chrX 118810 118954 -162480976 + FLAM_C SINE Alu 1 142 -1 493 227 169 7 chrX 118962 119116 -162480814 - L1MC4 LINE L1 -285 7757 7579 286 164 30 0 chrX 119125 119192 -162480738 - L1MB4 LINE L1 0 6180 6112 336 200 0 0 chrX 119268 119328 -162480602 - L1MB4 LINE L1 -55 6125 6066 1233 141 0 0 chrX 119337 119514 -162480416 + AluSg/x SINE Alu 134 310 0 1153 253 88 40 chrX 119567 120089 -162479841 + L1ME1 LINE L1 4767 5313 -833 1941 141 0 3 chrX 120090 120416 -162479514 - AluSx SINE Alu 0 325 1 2108 134 0 10 chrX 120424 120729 -162479201 + AluSx SINE Alu 1 302 -10 1788 239 34 60 chrX 120729 121079 -162478851 + L1ME1 LINE L1 5595 5953 -381 1976 107 61 151 chrX 121079 121293 -162478637 - Tigger2a DNA MER2_type -2274 434 285 2005 154 13 0 chrX 121293 121599 -162478331 + AluJo SINE Alu 1 310 -2 1976 107 61 151 chrX 121599 121861 -162478069 - Tigger2a DNA MER2_type -2423 285 1 1788 239 34 60 chrX 121861 122112 -162477818 + L1ME1 LINE L1 5953 6334 0 572 184 14 40 chrX 122231 122588 -162477342 + (TATATG)n Simple_repeat Simple_repeat 1 347 0 477 216 3 55 chrX 122612 122884 -162477046 + (TATATG)n Simple_repeat Simple_repeat 1 375 -39 722 198 0 0 chrX 122884 123010 -162476920 + FLAM_C SINE Alu 1 126 -7 477 216 3 55 chrX 123010 123049 -162476881 + (TATATG)n Simple_repeat Simple_repeat 375 414 0 234 121 35 35 chrX 123053 123111 -162476819 + L1MCa LINE L1 2006 2063 -4363 520 208 4 28 chrX 123111 123357 -162476573 + (TATATG)n Simple_repeat Simple_repeat 1 240 0 220 295 16 0 chrX 123360 123421 -162476509 + (TATG)n Simple_repeat Simple_repeat 1 62 0 496 240 6 6 chrX 123422 123597 -162476333 + (TATATG)n Simple_repeat Simple_repeat 3 177 0 1765 161 11 0 chrX 123912 124198 -162475732 - AluJo SINE Alu 0 312 24 1015 262 62 54 chrX 124567 125063 -162474867 + LTR1B LTR ERV1 25 524 -302 602 188 14 76 chrX 125168 125312 -162474618 + HUERS-P2 LTR ERV1 2 136 -2952 * 2836 207 37 40 chrX 125283 125882 -162474048 + HUERS-P2 LTR ERV1 616 1212 -1876 1718 196 10 3 chrX 125876 126177 -162473753 + HUERS-P2 LTR ERV1 1079 1381 -1707 * 2445 188 53 9 chrX 126176 126725 -162473205 + HUERS-P2 LTR ERV1 2467 3074 -14 973 229 113 91 chrX 126726 127290 -162472640 + LTR1B LTR ERV1 10 589 -237 977 191 0 0 chrX 127387 127544 -162472386 - AluJb SINE Alu -20 292 136 893 179 14 82 chrX 127544 127863 -162472067 - L1MA4 LINE L1 -27 6273 6011 23 0 0 0 chrX 128016 128039 -162471891 + AT_rich Low_complexity Low_complexity 1 23 0 743 149 9 0 chrX 128039 128153 -162471777 - FLAM_C SINE Alu -24 119 5 407 207 73 29 chrX 128606 128689 -162471241 + LTR8 LTR ERV1 1 74 -467 219 36 0 0 chrX 128689 128717 -162471213 + (TTG)n Simple_repeat Simple_repeat 3 30 0 407 207 73 29 chrX 128717 128793 -162471137 + LTR8 LTR ERV1 74 145 -396 1687 189 7 0 chrX 128909 129210 -162470720 + AluJo SINE Alu 5 307 -5 872 194 20 30 chrX 129443 129644 -162470286 + MER20 DNA MER1_type 1 199 -20 746 128 0 115 chrX 131288 131496 -162468434 - FLAM_C SINE Alu 0 191 1 264 234 26 13 chrX 131847 131924 -162468006 + (TA)n Simple_repeat Simple_repeat 2 79 0 358 259 29 3 chrX 131957 132313 -162467617 + (TA)n Simple_repeat Simple_repeat 1 365 0 267 189 54 34 chrX 132273 132321 -162467609 + (TTATA)n Simple_repeat Simple_repeat 1 47 -104 * 872 150 0 0 chrX 132321 132454 -162467476 - FLAM_C SINE Alu 0 133 1 267 189 54 34 chrX 132454 132553 -162467377 + (TTATA)n Simple_repeat Simple_repeat 47 151 0 262 219 14 41 chrX 132884 132957 -162466973 - MER116 DNA Mariner -2 78 8 2319 99 0 0 chrX 133036 133329 -162466601 - AluSx SINE Alu -19 293 1 180 158 0 0 chrX 133374 133412 -162466518 + T-rich Low_complexity Low_complexity 1 38 0 2008 143 0 0 chrX 133413 133729 -162466201 - AluSx SINE Alu 0 316 1 1597 179 66 0 chrX 133852 134125 -162465805 - AluJo SINE Alu -21 291 1 770 157 8 8 chrX 134125 134259 -162465671 - AluJo SINE Alu -176 136 3 821 136 0 0 chrX 134340 134458 -162465472 + AluJb SINE Alu 10 127 -185 2118 124 6 16 chrX 135104 135419 -162464511 + AluJo SINE Alu 1 312 0 254 93 23 0 chrX 135699 135742 -162464188 + MADE1 DNA Mariner 1 44 -36 621 146 9 125 chrX 135924 136136 -162463794 - MER4A LTR ERV1 -158 506 261 508 165 21 10 chrX 136136 136233 -162463697 - MER4A LTR ERV1 -566 98 1 2213 105 3 7 chrX 136635 136940 -162462990 - MER4E LTR ERV1 0 766 463 1047 57 0 29 chrX 136943 137083 -162462847 + AluSg/x SINE Alu 175 310 0 2960 127 31 27 chrX 137085 137574 -162462356 - MER4E LTR ERV1 -288 491 1 500 129 0 12 chrX 137925 138010 -162461920 - AluJ/FLAM SINE Alu -227 85 2 2905 13 0 0 chrX 138605 138960 -162460970 - AluY SINE Alu 0 355 1 740 191 0 22 chrX 139038 139174 -162460756 - FLAM_C SINE Alu 0 133 1 1617 162 41 0 chrX 139968 140239 -162459691 - AluJb SINE Alu -26 286 5 1830 185 0 6 chrX 140896 141210 -162458720 - AluJb SINE Alu 0 312 1 2245 123 0 0 chrX 141213 141521 -162458409 - AluSx SINE Alu -4 308 1 1400 140 31 109 chrX 141597 141715 -162458215 + AluJo SINE Alu 18 144 -168 2447 75 0 0 chrX 141715 142007 -162457923 - AluY SINE Alu -18 293 2 1400 140 31 109 chrX 142007 142181 -162457749 + AluJo SINE Alu 144 287 -25 2275 91 0 10 chrX 142184 142491 -162457439 + AluSx SINE Alu 1 304 -8 1823 150 0 36 chrX 142899 143205 -162456725 - AluJo SINE Alu -17 295 1 702 136 0 64 chrX 143609 143749 -162456181 - FLAM_C SINE Alu 0 133 3 2586 181 13 63 chrX 143754 144305 -162455625 + MER74A LTR ERVL 23 545 -13 2240 106 0 0 chrX 144352 144635 -162455295 + AluSx SINE Alu 1 307 0 184 42 0 0 chrX 144635 144659 -162455271 + (CAAA)n Simple_repeat Simple_repeat 2 180 0 650 240 6 11 chrX 144706 144881 -162455049 + MER5B DNA MER1_type 1 174 -4 1840 167 0 20 chrX 144929 145228 -162454702 + AluJo SINE Alu 4 296 -16 998 210 0 0 chrX 145228 145404 -162454526 + AluJb SINE Alu 134 309 -3 900 137 0 8 chrX 145994 146125 -162453805 + FLAM_C SINE Alu 4 133 -10 24 0 0 0 chrX 146125 146149 -162453781 + AT_rich Low_complexity Low_complexity 1 24 0 841 164 7 7 chrX 146326 146478 -162453452 + MLT1A1 LTR MaLR 1 152 -213 949 111 0 15 chrX 146481 146616 -162453314 + FLAM_C SINE Alu 1 133 0 29 94 0 0 chrX 146988 147073 -162452857 + AT_rich Low_complexity Low_complexity 1 85 0 1683 161 0 81 chrX 147132 147454 -162452476 - AluJb SINE Alu -16 296 1 837 230 148 19 chrX 147779 148097 -162451833 + MLT1D LTR MaLR 1 359 -146 969 160 10 35 chrX 148100 148162 -162451768 - MLT1B LTR MaLR -195 195 133 2553 104 28 6 chrX 148162 148518 -162451412 - THE1B LTR MaLR 0 364 1 969 160 10 35 chrX 148518 148655 -162451275 - MLT1B LTR MaLR -257 133 1 * 988 266 76 6 chrX 148655 149008 -162450922 + MLT1C LTR MaLR 88 465 -2 2025 130 0 27 chrX 149717 150018 -162449912 + AluSx SINE Alu 1 293 -19 1513 181 46 11 chrX 150157 150438 -162449492 + AluJo SINE Alu 1 291 -21 2105 144 7 0 chrX 150808 151107 -162448823 - AluSx SINE Alu -11 301 1 930 119 0 22 chrX 151198 151332 -162448598 - FLAM_C SINE Alu -2 131 1 1720 183 0 3 chrX 151739 152046 -162447884 - AluJo SINE Alu 0 306 1 1106 141 0 0 chrX 152108 152271 -162447659 + AluSg/x SINE Alu 129 291 -19 1905 133 0 73 chrX 152295 152625 -162447305 + AluJb SINE Alu 6 311 -1 241 167 42 0 chrX 153256 153304 -162446626 + MLT1D LTR MaLR 1 50 -455 327 83 42 0 chrX 153305 153353 -162446577 + MLT1D LTR MaLR 1 50 -455 303 125 42 0 chrX 153354 153402 -162446528 + MLT1D LTR MaLR 1 50 -455 335 303 80 42 chrX 153510 153774 -162446156 + L2 LINE L2 2703 2976 -338 579 159 0 37 chrX 153885 154048 -162445882 + CT-rich Low_complexity Low_complexity 3 159 0 222 314 35 23 chrX 154102 154188 -162445742 + L2 LINE L2 3137 3223 -49 2511 81 0 0 chrX 154464 154774 -162445156 - AluSg SINE Alu 0 310 1 1674 174 14 0 chrX 154774 155050 -162444880 - AluJo SINE Alu -32 280 1 2368 115 0 0 chrX 155176 155488 -162444442 - AluSx SINE Alu 0 312 1 3967 105 86 21 chrX 156047 156356 -162443574 - PABL_A LTR ERV1 0 660 372 2284 107 0 0 chrX 156356 156682 -162443248 + AluSx SINE Alu 1 326 0 3967 105 86 21 chrX 156682 156990 -162442940 - PABL_A LTR ERV1 -288 372 2 270 189 0 0 chrX 156996 157049 -162442881 - L1MB7 LINE L1 -61 6123 6071 2773 121 23 35 chrX 157049 157393 -162442537 - MER4E LTR ERV1 0 766 419 2523 94 0 0 chrX 157393 157700 -162442230 + AluSx SINE Alu 1 307 -5 2773 121 23 35 chrX 157700 157961 -162441969 - MER4E LTR ERV1 -347 419 1 1791 157 10 13 chrX 157984 158289 -162441641 - AluJb SINE Alu 0 312 9 343 143 39 0 chrX 158297 158374 -162441556 - L1MB7 LINE L1 -109 6075 5996 921 143 0 29 chrX 158422 158562 -162441368 - AluJo SINE Alu -176 136 1 598 212 97 0 chrX 158569 158734 -162441196 - L1MB7 LINE L1 -218 5966 5786 2420 99 10 0 chrX 158780 159083 -162440847 + AluSx SINE Alu 1 306 -6 392 265 5 134 chrX 159129 159518 -162440412 - HsTC2 DNA Tc2 -21 1877 1539 * 956 294 73 12 chrX 159515 159923 -162440007 - MLT1C LTR MaLR -30 437 5 813 233 149 19 chrX 159938 160247 -162439683 - MLT1D LTR MaLR -145 360 12 329 217 13 16 chrX 160269 160408 -162439522 - MLT1C LTR MaLR -145 360 192 180 163 0 0 chrX 160548 160591 -162439339 + GA-rich Low_complexity Low_complexity 2 44 0 4099 77 16 12 chrX 160956 161529 -162438401 - PABL_B LTR ERV1 0 667 93 2439 94 0 0 chrX 161529 161836 -162438094 - AluSx SINE Alu -5 307 1 253 286 0 0 chrX 162529 162585 -162437345 + (CA)n Simple_repeat Simple_repeat 1 56 0 1820 104 101 17 chrX 162609 162896 -162437034 - AluSx SINE Alu -1 311 1 720 153 65 32 chrX 162901 163025 -162436905 - FLAM_C SINE Alu -14 129 2 1073 82 109 0 chrX 163118 163265 -162436665 + AluSg/x SINE Alu 147 309 -1 1564 239 28 0 chrX 163289 163682 -162436248 - L1MB5 LINE L1 -49 6125 5722 1545 161 24 31 chrX 164195 164486 -162435444 + AluJb SINE Alu 24 312 0 1970 129 6 55 chrX 164590 164916 -162435014 + AluSx SINE Alu 1 310 -2 959 226 26 44 chrX 165359 165559 -162434371 - MLT1B LTR MaLR -15 375 180 2270 113 7 3 chrX 165559 165869 -162434061 - AluSx SINE Alu -1 311 1 959 226 26 44 chrX 165869 165938 -162433992 - MLT1B LTR MaLR -210 180 111 1325 188 82 41 chrX 166246 166538 -162433392 + AluJo SINE Alu 1 304 -8 263 200 0 43 chrX 166539 166609 -162433321 + GA-rich Low_complexity Low_complexity 1 67 0 1739 164 13 20 chrX 167210 167508 -162432422 - AluJo SINE Alu -13 299 4 928 190 15 41 chrX 168002 168197 -162431733 + AluJo SINE Alu 1 190 -122 1338 82 0 22 chrX 168742 168947 -162430983 + AluSg/x SINE Alu 118 310 0 2393 99 0 3 chrX 169122 169435 -162430495 - AluSx SINE Alu 0 312 1 21 57 0 0 chrX 169679 169714 -162430216 + GC_rich Low_complexity Low_complexity 1 35 0 244 252 0 66 chrX 169914 170050 -162429880 + GA-rich Low_complexity Low_complexity 3 211 0 233 211 18 0 chrX 170143 170200 -162429730 + (CCCCG)n Simple_repeat Simple_repeat 2 59 0 2887 141 90 52 chrX 170849 171356 -162428574 - MER51A LTR ERV1 -9 625 90 1729 115 20 112 chrX 171356 171705 -162428225 + AluYb8 SINE Alu 2 318 0 2887 141 90 52 chrX 171705 171799 -162428131 - MER51A LTR ERV1 -544 90 1 422 202 53 0 chrX 172068 172162 -162427768 + AluSg/x SINE Alu 208 306 -3 632 200 40 23 chrX 172162 172365 -162427565 - LTR54B LTR ERV1 -181 329 52 5014 91 3 3 chrX 172365 173025 -162426905 + PABL_A LTR ERV1 1 660 0 632 200 40 23 chrX 173025 173066 -162426864 - LTR54B LTR ERV1 -458 52 13 923 237 88 9 chrX 173513 173830 -162426100 - MLT1C LTR MaLR -32 435 94 912 187 44 6 chrX 173838 174020 -162425910 + MLT1B LTR MaLR 1 189 -201 634 265 95 30 chrX 174002 174347 -162425583 - MLT1C LTR MaLR -98 369 1 * 1955 140 0 3 chrX 174614 174900 -162425030 + AluJb SINE Alu 1 285 -27 597 230 13 13 chrX 174967 175119 -162424811 - L1MB8 LINE L1 -22 6156 6005 1857 158 10 49 chrX 175129 175456 -162424474 + MLT1B LTR MaLR 12 323 -67 2081 130 37 0 chrX 175456 175756 -162424174 - AluJb SINE Alu -1 311 1 1857 158 10 49 chrX 175756 175815 -162424115 + MLT1B LTR MaLR 323 383 -7 592 223 1 7 chrX 175820 175959 -162423971 - L1MB7 LINE L1 -192 5992 5876 2352 97 0 25 chrX 176038 176395 -162423535 - AluSx SINE Alu 0 349 1 1083 211 78 14 chrX 176402 176686 -162423244 + LTR52 LTR ERVL 23 324 -97 180 0 0 0 chrX 176691 176711 -162423219 + (TG)n Simple_repeat Simple_repeat 1 20 0 * 216 0 0 0 chrX 176710 176734 -162423196 + (GA)n Simple_repeat Simple_repeat 1 24 0 290 177 16 16 chrX 177245 177307 -162422623 - MER4D LTR ERV1 -8 895 834 332 97 58 19 chrX 177365 177468 -162422462 + (TAGA)n Simple_repeat Simple_repeat 4 110 0 358 132 54 38 chrX 177513 177774 -162422156 + (TAGA)n Simple_repeat Simple_repeat 1 265 0 563 219 17 62 chrX 177800 177978 -162421952 - MER20 DNA MER1_type -2 217 48 264 77 0 0 chrX 178008 178047 -162421883 + (TAGG)n Simple_repeat Simple_repeat 1 39 0 200 140 70 0 chrX 178056 178113 -162421817 + (TAGA)n Simple_repeat Simple_repeat 3 63 0 1334 95 0 0 chrX 178413 178581 -162421349 + AluSg/x SINE Alu 137 304 -8 2290 230 48 11 chrX 178906 179445 -162420485 - MER68 LTR ERV1 -2 560 2 2015 137 0 10 chrX 179802 180095 -162419835 - AluSx SINE Alu -1 311 22 2388 53 40 7 chrX 180178 180479 -162419451 - AluY SINE Alu 0 311 1 1679 192 10 0 chrX 181177 181474 -162418456 + AluJo SINE Alu 1 300 -12 1882 157 124 122 chrX 181683 181696 -162418234 - L1MA4A LINE L1 -6 6297 6286 1218 186 103 73 chrX 181696 181997 -162417933 - AluJo SINE Alu -2 310 1 1882 157 124 122 chrX 181997 182442 -162417488 - L1MA4A LINE L1 -17 6286 5843 1765 158 3 27 chrX 182442 182740 -162417190 - AluSx SINE Alu -21 291 1 1882 157 124 122 chrX 182740 182792 -162417138 - L1MA4A LINE L1 -460 5843 5793 2195 128 0 0 chrX 182792 183098 -162416832 - AluJb SINE Alu -6 306 1 1882 157 124 122 chrX 183098 183216 -162416714 - L1MA4A LINE L1 -510 5793 5666 2278 108 0 0 chrX 183501 183796 -162416134 + AluSx SINE Alu 9 303 -9 1608 176 8 0 chrX 183800 184055 -162415875 + AluJb SINE Alu 26 282 -30 1835 148 13 44 chrX 184412 184730 -162415200 + AluJo SINE Alu 5 312 0 2340 133 75 8 chrX 184812 185211 -162414719 - MSTA LTR MaLR 0 428 3 3313 114 110 9 chrX 185444 185998 -162413932 + MER4B LTR ERV1 1 610 0 2413 141 31 9 chrX 186356 186781 -162413149 - MER4E LTR ERV1 -1 778 345 832 105 3 238 chrX 186774 186795 -162413135 - MER4D LTR ERV1 -653 219 195 * 2114 130 3 13 chrX 186795 187094 -162412836 - AluJb SINE Alu -16 296 1 832 105 3 238 chrX 187094 187251 -162412679 - MER4D LTR ERV1 -677 195 3 2562 75 0 0 chrX 187251 187559 -162412371 - AluY SINE Alu -3 308 1 2048 128 7 3 chrX 187569 187858 -162412072 - AluSx SINE Alu -22 290 1 832 105 3 238 chrX 187858 187953 -162411977 - MER4D LTR ERV1 -755 117 1 279 290 45 52 chrX 188377 188532 -162411398 - L2 LINE L2 -1 3312 3159 72 89 0 0 chrX 188532 188723 -162411207 + AT_rich Low_complexity Low_complexity 1 191 0 1268 102 0 0 chrX 189175 189187 -162410743 - AluSg/x SINE Alu -2 308 297 417 81 0 0 chrX 189187 189249 -162410681 - L1PB1 LINE L1 0 6151 6090 1268 102 0 0 chrX 189249 189402 -162410528 - AluSg/x SINE Alu -12 298 143 2066 146 10 0 chrX 189461 189763 -162410167 + AluSx SINE Alu 1 305 -7 207 0 0 0 chrX 189844 189867 -162410063 + (TG)n Simple_repeat Simple_repeat 1 23 0 396 228 39 63 chrX 189875 190002 -162409928 - MLT1G1 LTR MaLR -8 587 464 471 118 0 0 chrX 190276 190352 -162409578 + (TGGA)n Simple_repeat Simple_repeat 2 77 0 180 0 0 0 chrX 190412 190432 -162409498 + (GA)n Simple_repeat Simple_repeat 1 20 0 544 82 47 31 chrX 190448 190716 -162409214 + (TAGA)n Simple_repeat Simple_repeat 1 272 0 601 141 28 34 chrX 190740 190917 -162409013 + (TAGA)n Simple_repeat Simple_repeat 3 178 0 2046 102 0 25 chrX 191804 192116 -162407814 - AluSx SINE Alu 0 309 5 1911 167 3 16 chrX 192506 192811 -162407119 + AluJb SINE Alu 1 301 -11 364 288 68 27 chrX 192891 193037 -162406893 - MLT1J LTR MaLR -153 358 207 21 36 0 0 chrX 194016 194044 -162405886 + AT_rich Low_complexity Low_complexity 1 28 0 391 252 78 9 chrX 194264 194379 -162405551 - MLT1J LTR MaLR -153 358 236 360 183 49 24 chrX 194572 194654 -162405276 + MLT1H LTR MaLR 52 135 -420 536 219 214 26 chrX 195198 195390 -162404540 - MLT1J LTR MaLR -46 465 238 481 275 24 24 chrX 195583 195750 -162404180 + MLT1H LTR MaLR 94 260 -289 303 174 35 0 chrX 195783 195869 -162404061 + GA-rich Low_complexity Low_complexity 1 89 0 2189 153 70 48 chrX 195898 196357 -162403573 - MLT1D LTR MaLR 0 505 37 451 66 16 0 chrX 196351 196412 -162403518 - THE1C LTR MaLR -313 62 1 * 590 195 0 159 chrX 196614 196683 -162403247 + MLT1D LTR MaLR 8 86 -419 1783 218 49 13 chrX 196683 197133 -162402797 - MLT1C LTR MaLR 0 467 2 590 195 0 159 chrX 197133 197155 -162402775 + MLT1D LTR MaLR 86 110 -395 1457 103 45 232 chrX 197155 197603 -162402327 - THE1B LTR MaLR 0 364 1 590 195 0 159 chrX 197603 197705 -162402225 + MLT1D LTR MaLR 110 171 -334 1634 175 3 13 chrX 197740 198054 -162401876 - AluJo SINE Alu -1 311 1 823 173 8 0 chrX 198054 198187 -162401743 - AluJo SINE Alu -177 135 2 913 158 0 49 chrX 198206 198389 -162401541 - L1MA4 LINE L1 -7 6293 6119 2138 114 16 0 chrX 198389 198695 -162401235 + AluSx SINE Alu 1 311 -1 913 158 0 49 chrX 198695 198714 -162401216 - L1MA4 LINE L1 -181 6119 6101 2033 115 20 3 chrX 198728 199033 -162400897 + AluSx SINE Alu 1 310 -2 189 0 0 0 chrX 199157 199178 -162400752 + (A)n Simple_repeat Simple_repeat 1 21 0 27 0 0 0 chrX 199320 199347 -162400583 + AT_rich Low_complexity Low_complexity 1 27 0 195 42 0 0 chrX 199514 199538 -162400392 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 1484 157 8 0 chrX 199540 199795 -162400135 - AluJo SINE Alu -30 282 26 891 232 46 46 chrX 199951 200231 -162399699 + PABL_A LTR ERV1 381 660 0 1572 201 84 43 chrX 200306 200748 -162399182 - MER31A LTR ERV1 -25 460 1 1730 158 44 0 chrX 201453 201750 -162398180 + AluJb SINE Alu 1 310 -2 481 239 82 0 chrX 201821 201955 -162397975 + L1M4 LINE L1 4971 5115 -1031 219 36 0 0 chrX 201960 201988 -162397942 + (TAAA)n Simple_repeat Simple_repeat 1 28 0 1953 90 25 7 chrX 202011 202312 -162397618 + AluSc SINE Alu 1 306 0 2189 104 0 13 chrX 202313 202621 -162397309 - AluSq SINE Alu -9 304 1 324 206 100 123 chrX 202621 202791 -162397139 - MER34C LTR ERV1 -409 176 11 587 191 61 9 chrX 202799 202914 -162397016 + MER89 LTR ERV1 417 537 -22 2026 95 0 30 chrX 202964 203260 -162396670 - AluSx SINE Alu -14 298 12 1873 161 3 0 chrX 203283 203594 -162396336 - AluJb SINE Alu 0 312 1 285 317 0 0 chrX 203796 203878 -162396052 - MIR SINE MIR -11 251 170 365 219 47 60 chrX 204362 204526 -162395404 + MER34 LTR ERV1 5 191 -351 2630 108 0 5 chrX 204550 204922 -162395008 - L1PB1 LINE L1 0 6151 5782 265 263 0 0 chrX 204923 205003 -162394927 + L1MC4 LINE L1 6624 6703 -1339 * 299 89 0 0 chrX 204992 205037 -162394893 + L1P5 LINE L1 5782 5826 -325 324 356 0 0 chrX 205040 205130 -162394800 - L1MC4 LINE L1 -1339 6703 6614 1312 102 2 33 chrX 205145 205357 -162394573 - L1P5 LINE L1 -360 5791 5586 1291 196 38 38 chrX 205379 205493 -162394437 + MER57B LTR ERV1 1 114 -320 1725 140 238 14 chrX 205493 205842 -162394088 - MSTA LTR MaLR -1 427 1 1291 196 38 38 chrX 205842 206018 -162393912 + MER57B LTR ERV1 113 291 -143 379 165 89 0 chrX 206025 206104 -162393826 + LTR26B LTR ERV1 446 531 0 662 218 28 0 chrX 206126 206268 -162393662 + MLT1A1 LTR MaLR 220 365 0 1872 111 17 34 chrX 206390 206732 -162393198 - AluSx SINE Alu 0 337 1 651 175 56 81 chrX 206732 206892 -162393038 - MLT1A1 LTR MaLR -209 156 1 4234 115 6 9 chrX 207302 207891 -162392039 + MER41B LTR ERV1 1 589 -46 4133 58 24 7 chrX 207891 208440 -162391490 + LTR6B LTR ERV1 1 558 0 4234 115 6 9 chrX 208440 208487 -162391443 + MER41B LTR ERV1 589 635 0 533 85 24 12 chrX 208804 208886 -162391044 - MER4E LTR ERV1 0 779 697 3493 126 35 6 chrX 208886 209424 -162390506 + MER41A LTR ERV1 1 554 0 1647 214 76 31 chrX 209469 209914 -162390016 + MER50 LTR ERV1 251 715 -19 545 121 12 0 chrX 209942 210025 -162389905 + L1MB2 LINE L1 6023 6106 -65 841 147 0 15 chrX 210051 210187 -162389743 - AluJb SINE Alu -177 135 2 333 149 15 0 chrX 210187 210254 -162389676 + L1MB2 LINE L1 6100 6167 -4 2050 136 3 0 chrX 210526 210836 -162389094 - AluSx SINE Alu -1 311 1 293 89 0 0 chrX 211068 211113 -162388817 - Alu SINE Alu -7 295 251 720 162 0 0 chrX 211166 211277 -162388653 - AluSg/x SINE Alu -7 305 195 1578 170 3 17 chrX 211327 211621 -162388309 + AluJb SINE Alu 1 290 -22 367 260 10 0 chrX 211686 211782 -162388148 - MIR SINE MIR -42 220 124 466 204 21 126 chrX 211903 212007 -162387923 + L1MC4 LINE L1 6822 6899 -1143 2279 90 0 0 chrX 212007 212308 -162387622 + AluSx SINE Alu 1 301 -11 466 204 21 126 chrX 212308 212394 -162387536 + L1MC4 LINE L1 6899 6992 -1050 944 147 0 35 chrX 212394 212564 -162387366 + FRAM SINE Alu 1 163 -13 238 353 45 8 chrX 212667 212800 -162387130 + L1MC4 LINE L1 7092 7229 -813 1638 163 6 38 chrX 212997 213317 -162386613 + AluJo SINE Alu 1 310 -2 2149 124 7 0 chrX 213346 213653 -162386277 - AluSx SINE Alu -3 309 1 22 0 0 0 chrX 213661 213683 -162386247 + AT_rich Low_complexity Low_complexity 1 22 0 29 0 0 0 chrX 214007 214036 -162385894 + AT_rich Low_complexity Low_complexity 1 29 0 327 230 0 0 chrX 214036 214110 -162385820 - L1PA16 LINE L1 -9 6157 6084 1164 147 0 11 chrX 214139 214316 -162385614 - MER4A LTR ERV1 0 664 490 825 114 8 0 chrX 214671 214803 -162385127 - L1MA5A LINE L1 -226 6071 5939 1183 149 4 54 chrX 214823 214841 -162385089 + L1MA5A LINE L1 6065 6082 -215 3582 127 15 2 chrX 214841 215361 -162384569 + MER1A DNA MER1_type 1 527 0 1183 149 4 54 chrX 215361 215583 -162384347 + L1MA5A LINE L1 6082 6293 -4 1824 151 0 7 chrX 215684 215988 -162383942 - AluSx SINE Alu -10 302 1 1665 160 17 0 chrX 218033 218321 -162381609 - AluJo SINE Alu -18 294 2 294 175 0 0 chrX 218474 218531 -162381399 - MER4-int LTR ERV1 -5430 1168 1112 243 0 0 0 chrX 218756 218783 -162381147 + (CA)n Simple_repeat Simple_repeat 2 28 0 525 132 40 20 chrX 218907 219059 -162380871 + (TCTA)n Simple_repeat Simple_repeat 3 157 0 538 154 22 33 chrX 219090 219272 -162380658 + (TCTA)n Simple_repeat Simple_repeat 1 180 0 297 136 36 27 chrX 219337 219383 -162380547 + (TAGA)n Simple_repeat Simple_repeat 3 47 -66 2170 90 17 0 chrX 219383 219682 -162380248 + AluSx SINE Alu 1 304 -8 297 136 36 27 chrX 219682 219745 -162380185 + (TAGA)n Simple_repeat Simple_repeat 47 113 0 21 0 0 0 chrX 219851 219872 -162380058 + AT_rich Low_complexity Low_complexity 1 21 0 1345 161 93 43 chrX 220378 220680 -162379250 + AluJb SINE Alu 1 312 0 849 119 0 0 chrX 221865 221983 -162377947 + FLAM_C SINE Alu 1 118 -25 1985 34 0 4 chrX 221990 222224 -162377706 - AluY SINE Alu -21 290 58 1938 117 0 0 chrX 222333 222606 -162377324 - AluSq SINE Alu -40 273 1 324 206 100 123 chrX 222606 222776 -162377154 - MER34C LTR ERV1 -409 176 11 587 191 61 9 chrX 222784 222899 -162377031 + MER89 LTR ERV1 417 537 -22 2026 95 0 30 chrX 222949 223245 -162376685 - AluSx SINE Alu -14 298 12 1261 248 3 0 chrX 223264 223575 -162376355 - AluJb SINE Alu 0 312 1 22 0 0 0 chrX 224056 224078 -162375852 + AT_rich Low_complexity Low_complexity 1 22 0 243 0 0 0 chrX 224221 224248 -162375682 + (A)n Simple_repeat Simple_repeat 1 27 0 546 227 161 39 chrX 224757 224861 -162375069 + MLT1J2 LTR MaLR 126 216 -234 653 248 25 20 chrX 224861 225063 -162374867 - MER105 DNA DNA -1 203 1 546 227 161 39 chrX 225063 225229 -162374701 + MLT1J2 LTR MaLR 216 450 0 296 338 46 70 chrX 225624 225908 -162374022 - L2 LINE L2 -55 3258 2982 1792 135 40 20 chrX 226169 226472 -162373458 - AluSx SINE Alu -3 309 1 1091 196 12 80 chrX 226492 226914 -162373016 + L1MA9 LINE L1 5946 6324 -10 25 31 0 0 chrX 226919 226951 -162372979 + AT_rich Low_complexity Low_complexity 1 32 0 228 306 105 24 chrX 227143 227267 -162372663 - MIR SINE MIR -74 188 55 2052 102 0 3 chrX 228545 228875 -162371055 - AluSx SINE Alu 0 329 1 550 293 99 92 chrX 229336 229779 -162370151 + L1MEc LINE L1 786 1156 -5049 1967 106 0 3 chrX 229779 230092 -162369838 + AluSx SINE Alu 1 312 0 550 293 99 92 chrX 230092 230201 -162369729 + L1MEc LINE L1 1156 1263 -4942 1771 147 16 3 chrX 230340 230646 -162369284 + AluJb SINE Alu 1 310 -2 1915 172 21 3 chrX 230887 231213 -162368717 + MER2 DNA MER2_type 7 338 -7 1276 99 0 6 chrX 231430 231612 -162368318 - L1PA8 LINE L1 0 6172 5992 880 64 0 0 chrX 231804 231914 -162368016 - AluSx SINE Alu -9 303 194 978 128 0 0 chrX 231915 232056 -162367874 - AluSx SINE Alu -172 141 1 2128 118 0 3 chrX 232163 232469 -162367461 - AluSx SINE Alu -7 305 1 502 146 12 0 chrX 232469 232551 -162367379 + Tigger5 DNA MER2_type 2241 2323 0 4978 136 13 19 chrX 233456 233786 -162366144 - L1MA5A LINE L1 0 6297 5967 1746 152 3 3 chrX 233786 234069 -162365861 - AluJb SINE Alu -29 283 1 4978 136 13 19 chrX 234069 234596 -162365334 - L1MA5A LINE L1 -330 5967 5445 2032 126 13 10 chrX 235223 235533 -162364397 + AluSx SINE Alu 1 311 -1 453 134 62 52 chrX 235715 235812 -162364118 + MER4A LTR ERV1 1 98 -566 1686 103 22 43 chrX 235812 236131 -162363799 + MER4A LTR ERV1 263 633 -31 1852 201 40 49 chrX 237197 237678 -162362252 - MLT1D LTR MaLR -1 488 27 189 361 0 0 chrX 238307 238368 -162361562 + L2 LINE L2 3208 3268 -4 2125 121 0 0 chrX 238562 238867 -162361063 + AluSx SINE Alu 1 305 -7 180 0 0 0 chrX 238928 238948 -162360982 + (A)n Simple_repeat Simple_repeat 1 20 0 349 209 85 69 chrX 240744 240960 -162358970 - MER106B DNA MER1_type -10 1049 3 965 252 103 50 chrX 241046 241105 -162358825 - Charlie1b DNA MER1_type -2259 502 448 1804 150 7 16 chrX 241105 241412 -162358518 - AluJb SINE Alu -8 304 1 965 252 103 50 chrX 241412 241829 -162358101 - Charlie1b DNA MER1_type -2313 448 1 391 307 0 0 chrX 241882 242035 -162357895 + (TA)n Simple_repeat Simple_repeat 2 154 0 259 141 16 62 chrX 242051 242179 -162357751 + (TAGA)n Simple_repeat Simple_repeat 1 122 0 203 146 0 42 chrX 242209 242257 -162357673 + (TAGA)n Simple_repeat Simple_repeat 1 46 0 344 145 5 72 chrX 242283 242476 -162357454 + (TAGA)n Simple_repeat Simple_repeat 1 180 0 568 145 11 43 chrX 242506 242692 -162357238 + (TAGA)n Simple_repeat Simple_repeat 1 180 0 702 11 32 0 chrX 242777 242872 -162357058 + (TAGA)n Simple_repeat Simple_repeat 3 100 0 524 191 0 71 chrX 243609 243653 -162356277 + MER58A DNA MER1_type 45 91 -250 1512 135 9 120 chrX 243653 243986 -162355944 - AluJo SINE Alu -16 296 1 524 191 0 71 chrX 243986 244004 -162355926 + MER58A DNA MER1_type 91 109 -232 1899 205 6 0 chrX 244004 244350 -162355580 + MER7A DNA MER2_type 1 346 0 524 191 0 71 chrX 244350 244412 -162355518 + MER58A DNA MER1_type 109 161 -63 2019 140 7 0 chrX 244655 244940 -162354990 - AluSx SINE Alu -25 287 1 1274 148 14 0 chrX 245156 245366 -162354564 + AluSg/x SINE Alu 86 298 -14 2183 93 14 0 chrX 246085 246401 -162353529 + AluSx SINE Alu 1 320 0 1260 115 0 0 chrX 246407 246581 -162353349 + AluSg/x SINE Alu 131 304 -8 1848 234 84 40 chrX 247136 247325 -162352605 + L1MC4a LINE L1 6787 6966 -842 1994 146 0 7 chrX 247325 247619 -162352311 - AluJo SINE Alu -20 292 1 1848 234 84 40 chrX 247619 248048 -162351882 + L1MC4a LINE L1 6966 7439 -369 2083 110 7 0 chrX 248048 248350 -162351580 + AluSx SINE Alu 1 304 0 1848 234 84 40 chrX 248350 248387 -162351543 + L1MC4a LINE L1 7439 7473 -335 2813 74 94 5 chrX 248661 249066 -162350864 - LTR7 LTR ERV1 -9 441 1 1846 161 3 11 chrX 249435 249759 -162350171 - AluJo SINE Alu 0 322 1 229 314 93 21 chrX 249767 249961 -162349969 - HAL1 LINE L1 -767 1740 1533 245 284 176 12 chrX 249981 250231 -162349699 - HAL1 LINE L1 -1059 1448 1158 253 299 69 0 chrX 250402 250489 -162349441 - L1ME LINE L1 -401 5720 5628 717 106 10 0 chrX 250808 250912 -162349018 - L1MA2 LINE L1 -56 6248 6144 2281 79 23 13 chrX 251032 251335 -162348595 - AluSx SINE Alu -6 306 1 552 255 60 0 chrX 251616 251765 -162348165 + MER20 DNA MER1_type 48 205 -14 423 0 0 0 chrX 251841 251888 -162348042 + (TTTA)n Simple_repeat Simple_repeat 2 48 0 1967 105 3 57 chrX 251889 252185 -162347745 - AluSx SINE Alu -32 280 1 1593 159 4 15 chrX 252822 253092 -162346838 - AluJo SINE Alu -5 307 41 30 0 0 0 chrX 253185 253215 -162346715 + AT_rich Low_complexity Low_complexity 1 30 0 2237 113 0 25 chrX 253217 253536 -162346394 + AluSx SINE Alu 1 311 -1 318 203 0 0 chrX 253539 253603 -162346327 + L1MC4 LINE L1 6640 6703 -1339 23 0 0 0 chrX 253604 253627 -162346303 + AT_rich Low_complexity Low_complexity 1 23 0 21 57 0 0 chrX 253649 253684 -162346246 + AT_rich Low_complexity Low_complexity 1 35 0 22 0 0 0 chrX 253702 253724 -162346206 + AT_rich Low_complexity Low_complexity 1 22 0 507 268 0 0 chrX 253754 253933 -162345997 + (TA)n Simple_repeat Simple_repeat 1 179 0 234 197 53 53 chrX 253959 254035 -162345895 + L1MC3 LINE L1 6571 6646 -1139 652 221 2 10 chrX 254035 254627 -162345303 + (CATATA)n Simple_repeat Simple_repeat 1 587 0 214 270 0 58 chrX 254676 254850 -162345080 + (CATATA)n Simple_repeat Simple_repeat 2 165 0 243 231 103 0 chrX 254853 254931 -162344999 - L1MC4 LINE L1 -1344 6698 6613 1744 170 0 38 chrX 255434 255752 -162344178 + AluJb SINE Alu 1 306 -6 2070 128 10 3 chrX 256263 256559 -162343371 + AluJb SINE Alu 1 298 -14 1760 174 16 10 chrX 256883 257193 -162342737 + AluJo SINE Alu 1 312 0 630 168 23 12 chrX 257907 258080 -162341850 + (TCCA)n Simple_repeat Simple_repeat 3 177 0 600 134 53 12 chrX 258113 258284 -162341646 + (TCTA)n Simple_repeat Simple_repeat 1 178 0 682 116 35 17 chrX 258298 258470 -162341460 + (TCTA)n Simple_repeat Simple_repeat 3 177 0 448 86 86 19 chrX 258525 258687 -162341243 + (TCTA)n Simple_repeat Simple_repeat 4 176 0 181 158 53 0 chrX 258717 258774 -162341156 + (TCTA)n Simple_repeat Simple_repeat 1 60 0 1320 161 87 0 chrX 259316 259570 -162340360 - L1MB5 LINE L1 -6 6168 5893 1510 178 68 0 chrX 259609 259902 -162340028 - L1MB5 LINE L1 -14 6160 5848 837 251 55 42 chrX 260488 260891 -162339039 + HAL1 LINE L1 970 1377 -1130 348 83 0 0 chrX 260908 260956 -162338974 + (GGGGA)n Simple_repeat Simple_repeat 4 51 0 302 260 123 62 chrX 261008 261300 -162338630 + HAL1 LINE L1 1404 1713 -794 23 0 0 0 chrX 261322 261345 -162338585 + AT_rich Low_complexity Low_complexity 1 23 0 901 179 7 0 chrX 261345 261490 -162338440 + FRAM SINE Alu 12 157 -19 393 22 0 0 chrX 261491 261537 -162338393 + (TG)n Simple_repeat Simple_repeat 2 47 0 1601 179 23 0 chrX 262404 262667 -162337263 - AluJo SINE Alu -25 287 19 1792 111 16 46 chrX 262682 262988 -162336942 - AluJo SINE Alu -10 302 6 905 173 113 90 chrX 263555 263910 -162336020 - MLT1C LTR MaLR 0 390 61 3924 107 42 23 chrX 263910 264509 -162335421 + MER4B LTR ERV1 1 610 0 905 173 113 90 chrX 264509 264567 -162335363 - MLT1C LTR MaLR -329 61 6 1980 177 8 20 chrX 265943 266338 -162333592 + MLT1B LTR MaLR 1 390 0 1588 128 76 49 chrX 266364 266541 -162333389 + MLT1B LTR MaLR 1 191 -199 2230 110 0 0 chrX 266541 266833 -162333097 + AluSp SINE Alu 1 292 -21 1588 128 76 49 chrX 266833 266943 -162332987 + MLT1B LTR MaLR 191 296 -94 487 265 19 31 chrX 267183 267345 -162332585 + Charlie1 DNA MER1_type 2163 2322 -439 259 246 33 16 chrX 267753 267814 -162332116 - HERVL74 LTR ERVL -4776 909 848 924 130 0 0 chrX 268010 268133 -162331797 + FLAM_C SINE Alu 1 123 -20 23 54 0 0 chrX 268133 268170 -162331760 + AT_rich Low_complexity Low_complexity 1 37 0 1945 141 7 7 chrX 268431 268737 -162331193 - AluJo SINE Alu -6 306 1 26 0 0 0 chrX 269798 269824 -162330106 + GC_rich Low_complexity Low_complexity 1 26 0 23 54 0 0 chrX 269953 269990 -162329940 + GC_rich Low_complexity Low_complexity 1 37 0 27 29 0 0 chrX 270097 270131 -162329799 + GC_rich Low_complexity Low_complexity 1 34 0 189 154 0 0 chrX 270346 270385 -162329545 + (TGAA)n Simple_repeat Simple_repeat 1 39 0 222 236 0 18 chrX 270428 270483 -162329447 + (CATG)n Simple_repeat Simple_repeat 3 56 0 358 270 3 17 chrX 270530 270893 -162329037 + (TGAA)n Simple_repeat Simple_repeat 1 357 0 198 289 0 0 chrX 270912 271061 -162328869 + (TGAA)n Simple_repeat Simple_repeat 4 152 0 195 162 0 0 chrX 271121 271158 -162328772 + (TGAG)n Simple_repeat Simple_repeat 1 37 0 321 304 19 6 chrX 271165 271326 -162328604 + (TGAA)n Simple_repeat Simple_repeat 1 163 0 403 186 0 16 chrX 271408 271537 -162328393 + (TGAA)n Simple_repeat Simple_repeat 4 130 0 427 216 28 33 chrX 271560 271818 -162328112 + (TGAG)n Simple_repeat Simple_repeat 1 256 0 3513 171 2 0 chrX 272279 272869 -162327061 - L1PB4 LINE L1 -3 6153 5563 593 264 46 42 chrX 273368 273584 -162326346 - MER20 DNA MER1_type -2 217 1 565 131 51 17 chrX 273586 273806 -162326124 + (TAGA)n Simple_repeat Simple_repeat 1 262 -15 246 32 0 0 chrX 273806 273837 -162326093 + (ATG)n Simple_repeat Simple_repeat 2 32 0 565 131 51 17 chrX 273837 273854 -162326076 + (TAGA)n Simple_repeat Simple_repeat 262 277 0 296 171 51 8 chrX 273975 274092 -162325838 + (TAGA)n Simple_repeat Simple_repeat 3 124 0 460 241 89 0 chrX 274095 274207 -162325723 - MER20 DNA MER1_type -5 214 93 299 225 81 38 chrX 274321 274481 -162325449 + MER5A DNA MER1_type 23 189 0 758 163 0 23 chrX 275138 275267 -162324663 + FLAM_C SINE Alu 1 126 -17 1625 171 23 33 chrX 275279 275583 -162324347 + AluJo SINE Alu 1 301 -11 22 0 0 0 chrX 275777 275799 -162324131 + AT_rich Low_complexity Low_complexity 1 22 0 2361 105 3 0 chrX 275941 276245 -162323685 - AluSx SINE Alu -7 305 1 378 316 117 10 chrX 276386 276592 -162323338 + MLT1L LTR MaLR 344 571 -44 2386 86 0 7 chrX 276731 277035 -162322895 - AluSx SINE Alu -10 302 1 228 276 23 11 chrX 277036 277123 -162322807 - Charlie1 DNA MER1_type -32 2729 2642 2201 199 81 25 chrX 277157 277785 -162322145 - Charlie1 DNA MER1_type -94 2667 2005 1727 178 0 7 chrX 277889 278187 -162321743 + AluJo SINE Alu 1 296 -16 239 297 133 36 chrX 278188 278353 -162321577 - L2 LINE L2 -15 3298 3118 1633 174 10 34 chrX 279506 279804 -162320126 - AluJo SINE Alu -21 291 1 2340 74 0 3 chrX 279854 280163 -162319767 + AluSx SINE Alu 1 308 0 1910 170 0 7 chrX 280455 280755 -162319175 - AluJo SINE Alu -14 298 1 25 31 0 0 chrX 280818 280850 -162319080 + AT_rich Low_complexity Low_complexity 1 32 0 742 111 0 16 chrX 281739 281865 -162318065 + (TTCC)n Simple_repeat Simple_repeat 1 124 0 1618 170 62 4 chrX 281865 282141 -162317789 - AluJo SINE Alu -20 292 1 1952 139 70 17 chrX 282277 282621 -162317309 - Tigger2a DNA MER2_type -72 362 1 198 0 0 0 chrX 283119 283141 -162316789 + (TG)n Simple_repeat Simple_repeat 2 23 0 242 154 19 39 chrX 284648 284700 -162315230 + L1M4c LINE L1 2440 2490 -3894 314 153 68 0 chrX 284743 284802 -162315128 + L1MA9 LINE L1 6250 6312 0 463 63 0 0 chrX 284921 284984 -162314946 + L1MA9 LINE L1 6250 6312 0 352 204 28 106 chrX 285939 286081 -162313849 - MER96B DNA MER1_type? -285 132 2 206 265 0 0 chrX 286911 286960 -162312970 + T-rich Low_complexity Low_complexity 1 49 0 294 215 0 51 chrX 286963 287042 -162312888 - U13 snRNA snRNA -2 102 28 2247 113 0 13 chrX 287046 287356 -162312574 + AluSx SINE Alu 1 306 -6 550 114 0 0 chrX 287674 287753 -162312177 - MADE1 DNA Mariner 0 80 2 243 0 0 0 chrX 287986 288013 -162311917 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 2260 108 0 0 chrX 288020 288308 -162311622 - AluSx SINE Alu -24 288 1 722 181 0 0 chrX 288311 288427 -162311503 - FLAM_A SINE Alu -15 127 12 1357 285 85 21 chrX 288905 289385 -162310545 + MLT1H LTR MaLR 39 549 0 230 366 74 25 chrX 289386 289588 -162310342 + L2 LINE L2 2467 2678 -636 189 319 7 83 chrX 289756 289900 -162310030 + L2 LINE L2 2952 3084 -188 412 241 107 0 chrX 290782 290894 -162309036 - L2 LINE L2 -5 3308 3185 476 298 24 6 chrX 291068 291236 -162308694 + (CA)n Simple_repeat Simple_repeat 2 172 0 205 167 17 17 chrX 291290 291350 -162308580 + (CA)n Simple_repeat Simple_repeat 1 60 0 336 367 6 22 chrX 291383 291563 -162308367 + (CATATA)n Simple_repeat Simple_repeat 3 179 0 344 360 12 6 chrX 291804 291965 -162307965 + (CA)n Simple_repeat Simple_repeat 1 162 0 27 0 0 0 chrX 292575 292602 -162307328 + AT_rich Low_complexity Low_complexity 1 27 0 1619 173 23 27 chrX 292613 292914 -162307016 + AluJo SINE Alu 1 300 -12 2156 157 3 9 chrX 293033 293423 -162306507 + MLT1B LTR MaLR 4 467 0 1206 187 4 0 chrX 293423 293648 -162306282 + MLT1B LTR MaLR 158 383 -7 2034 128 9 31 chrX 294427 294527 -162305403 + AluJo SINE Alu 1 102 -210 3245 163 15 91 chrX 294527 294799 -162305131 + LTR8 LTR ERV1 2 293 -398 2144 138 0 0 chrX 294799 295110 -162304820 + AluSx SINE Alu 1 311 -1 3245 163 15 91 chrX 295110 295584 -162304346 + LTR8 LTR ERV1 293 691 0 2034 128 9 31 chrX 295584 295802 -162304128 + AluJo SINE Alu 102 312 0 1933 219 31 103 chrX 295866 296485 -162303445 + LTR8 LTR ERV1 1 663 -28 1873 176 0 7 chrX 296485 296786 -162303144 + AluJo SINE Alu 1 299 -13 3400 138 17 87 chrX 296794 296935 -162302995 + LTR9 LTR ERV1 1 150 -462 2733 26 3 0 chrX 296935 297242 -162302688 + AluY SINE Alu 1 308 -3 3400 138 17 87 chrX 297242 297758 -162302172 + LTR9 LTR ERV1 150 612 0 1933 219 31 103 chrX 297758 297874 -162302056 + LTR8 LTR ERV1 670 691 0 1977 133 44 3 chrX 297943 298236 -162301694 - AluJb SINE Alu -7 305 1 1606 174 91 23 chrX 298452 298838 -162301092 + LTR49 LTR ERV1 1 412 -183 1489 127 4 8 chrX 298860 299096 -162300834 + L1PA15 LINE L1 5718 5952 -213 953 161 174 58 chrX 299096 299406 -162300524 + MER4A LTR ERV1 1 346 -318 347 145 40 13 chrX 299487 299563 -162300367 + MER4C LTR ERV1 279 356 -109 1479 108 0 0 chrX 299643 299855 -162300075 + L1PA15 LINE L1 5949 6160 -5 801 209 25 0 chrX 299855 300018 -162299912 + LTR29 LTR ERV1 456 622 0 225 94 0 0 chrX 300040 300072 -162299858 + (A)n Simple_repeat Simple_repeat 1 32 0 1084 89 0 0 chrX 300136 300271 -162299659 + AluSq/x SINE Alu 1 135 -178 2320 118 3 0 chrX 300271 300577 -162299353 + AluSx SINE Alu 1 307 -5 2242 106 0 52 chrX 300863 301192 -162298738 - AluJo SINE Alu 0 312 1 354 98 0 0 chrX 301332 301383 -162298547 + (TG)n Simple_repeat Simple_repeat 1 51 0 344 283 18 53 chrX 302432 302545 -162297385 - L1MC4 LINE L1 -1339 6703 6595 341 296 104 52 chrX 302539 302809 -162297121 + L1ME4a LINE L1 5684 5967 -154 * 336 179 0 64 chrX 302751 302829 -162297101 - L1MCa LINE L1 -4359 2067 1995 * 328 222 33 67 chrX 302811 302901 -162297029 + L1MC4 LINE L1 6614 6700 -1342 * 241 213 27 7 chrX 302903 302986 -162296944 + (TA)n Simple_repeat Simple_repeat 1 90 -63 2303 112 0 0 chrX 302986 303289 -162296641 + AluSg1 SINE Alu 1 303 -6 241 213 27 7 chrX 303289 303355 -162296575 + (TA)n Simple_repeat Simple_repeat 90 153 0 310 301 0 43 chrX 303404 303497 -162296433 + L1MC4 LINE L1 6615 6703 -1339 * 312 295 0 42 chrX 303474 303569 -162296361 + L1MC4 LINE L1 6615 6705 -1337 309 231 18 4 chrX 303572 303803 -162296127 + (TA)n Simple_repeat Simple_repeat 1 234 0 388 271 6 35 chrX 303811 303981 -162295949 + (CATATA)n Simple_repeat Simple_repeat 2 166 0 1709 122 52 15 chrX 305767 306038 -162293892 + AluJo SINE Alu 30 310 -2 1628 163 3 91 chrX 306242 306359 -162293571 + AluJb SINE Alu 1 127 -185 312 27 0 0 chrX 306359 306396 -162293534 + (CA)n Simple_repeat Simple_repeat 2 38 0 1628 163 3 91 chrX 306396 306609 -162293321 + AluJb SINE Alu 127 302 -10 2147 119 3 32 chrX 306629 306941 -162292989 - AluSx SINE Alu -9 303 1 325 337 49 33 chrX 307185 307369 -162292561 - L2 LINE L2 -27 3286 3100 1936 106 14 28 chrX 308134 308416 -162291514 - AluSx SINE Alu -23 289 12 2234 124 3 0 chrX 308416 308723 -162291207 - AluSx SINE Alu -4 308 1 318 231 141 45 chrX 308740 308761 -162291169 + L1ME LINE L1 738 756 -5324 1361 191 33 88 chrX 308761 309091 -162290839 + AluJo SINE Alu 1 312 0 318 231 141 45 chrX 309091 309225 -162290705 + L1ME LINE L1 756 2043 -4037 1588 209 0 16 chrX 309692 309998 -162289932 - AluJo SINE Alu -11 301 1 2329 106 0 0 chrX 310076 310369 -162289561 - AluSq SINE Alu -20 293 1 183 196 0 98 chrX 310493 310544 -162289386 + L2 LINE L2 3000 3045 -227 1043 137 6 12 chrX 310844 311005 -162288925 - FRAM SINE Alu -16 160 1 2378 103 0 0 chrX 311015 311317 -162288613 - AluSq SINE Alu -11 302 1 670 93 9 0 chrX 311587 311695 -162288235 - MLT1B LTR MaLR -123 267 159 1299 140 5 11 chrX 311696 311931 -162287999 - MLT1B LTR MaLR 0 467 158 2122 155 11 12 chrX 311931 312322 -162287608 - MLT1B LTR MaLR 0 467 1 2303 109 0 26 chrX 312374 312686 -162287244 + AluSx SINE Alu 1 304 -8 3952 109 24 82 chrX 313357 314062 -162285868 + MER4A LTR ERV1 1 664 0 2195 107 43 0 chrX 314342 314641 -162285289 - AluSx SINE Alu 0 312 1 294 50 0 0 chrX 314925 314965 -162284965 + (GTTTG)n Simple_repeat Simple_repeat 2 41 0 2096 127 3 0 chrX 314965 315249 -162284681 - AluSx SINE Alu -27 285 1 304 302 19 9 chrX 315520 315626 -162284304 + CT-rich Low_complexity Low_complexity 2 108 0 3017 183 19 72 chrX 315863 316590 -162283340 + LTR8 LTR ERV1 3 691 0 4664 85 41 0 chrX 317247 317881 -162282049 - PABL_A LTR ERV1 0 660 1 627 111 0 10 chrX 317919 318018 -162281912 + MER4A LTR ERV1 1 98 -566 419 189 7 45 chrX 318018 318166 -162281764 + MER4A LTR ERV1 261 461 -203 2071 115 35 0 chrX 318206 318494 -162281436 - AluSg SINE Alu -12 298 1 23 33 0 0 chrX 318502 318532 -162281398 + AT_rich Low_complexity Low_complexity 1 30 0 227 30 0 30 chrX 318726 318759 -162281171 + (TTTTC)n Simple_repeat Simple_repeat 4 35 0 990 186 4 75 chrX 318907 318995 -162280935 - MER2 DNA MER2_type -135 210 117 2230 123 0 0 chrX 318995 319295 -162280635 + AluSx SINE Alu 1 300 -12 990 186 4 75 chrX 319295 319432 -162280498 - MER2 DNA MER2_type -228 117 1 189 0 0 0 chrX 319532 319553 -162280377 + (TTA)n Simple_repeat Simple_repeat 2 22 0 904 154 28 0 chrX 319593 319736 -162280194 - AluSg/x SINE Alu -13 299 153 263 258 70 8 chrX 319737 319865 -162280065 - L1M4 LINE L1 -1031 5115 4980 2060 111 42 7 chrX 319878 320166 -162279764 + AluSx SINE Alu 1 298 -14 2042 138 13 10 chrX 320370 320681 -162279249 - AluJo SINE Alu 0 312 1 1138 61 0 0 chrX 321031 321163 -162278767 - AluY SINE Alu -179 132 1 1167 175 0 0 chrX 321320 321509 -162278421 - AluJb SINE Alu -1 311 123 1625 61 5 14 chrX 322068 322280 -162277650 - AluYa5 SINE Alu -3 308 99 4052 71 18 7 chrX 322280 322832 -162277098 + LTR6B LTR ERV1 1 558 0 900 40 0 0 chrX 322833 322934 -162276996 - AluYa5 SINE Alu -210 101 1 2443 109 0 0 chrX 322956 323268 -162276662 - AluSx SINE Alu 0 312 1 3784 194 19 4 chrX 323301 324054 -162275876 - L1MB5 LINE L1 -6 6168 5405 198 71 0 0 chrX 324605 324633 -162275297 + (TTCA)n Simple_repeat Simple_repeat 1 28 0 1140 114 0 0 chrX 325041 325087 -162274843 + (TTCC)n Simple_repeat Simple_repeat 1 222 0 1140 114 0 0 chrX 325087 325263 -162274667 + (TTCC)n Simple_repeat Simple_repeat 2 177 0 1179 112 0 0 chrX 325281 325460 -162274470 + (TTCC)n Simple_repeat Simple_repeat 1 179 0 415 216 11 28 chrX 325703 325884 -162274046 + CT-rich Low_complexity Low_complexity 3 180 0 23 54 0 0 chrX 325895 325932 -162273998 + AT_rich Low_complexity Low_complexity 1 37 0 2668 204 31 4 chrX 326209 326754 -162273176 - L1MB5 LINE L1 0 6174 5615 1674 190 3 31 chrX 327788 328109 -162271821 + AluJo SINE Alu 1 312 0 1289 191 22 4 chrX 328539 328811 -162271119 - L1MB5 LINE L1 -89 6085 5809 418 247 159 12 chrX 328957 329127 -162270803 + MLT1J2 LTR MaLR 256 450 0 228 378 56 14 chrX 329403 329546 -162270384 - MIR SINE MIR -11 251 103 2266 131 0 0 chrX 330144 330456 -162269474 - AluSx SINE Alu 0 312 1 3015 143 18 64 chrX 331824 332077 -162267853 + MER39B LTR ERV1 2 265 -388 2619 52 0 3 chrX 332077 332384 -162267546 + AluY SINE Alu 1 306 -5 3015 143 18 64 chrX 332384 332503 -162267427 + MER39B LTR ERV1 265 388 -265 2462 73 0 0 chrX 332503 332791 -162267139 + AluSc SINE Alu 1 288 -21 3015 143 18 64 chrX 332791 333072 -162266858 + MER39B LTR ERV1 388 626 -27 396 59 0 0 chrX 333525 333576 -162266354 + (TTCC)n Simple_repeat Simple_repeat 2 52 0 1944 147 0 17 chrX 333576 333876 -162266054 - AluSg SINE Alu -15 295 1 2090 143 0 0 chrX 333876 334183 -162265747 - AluSx SINE Alu -5 307 1 3396 147 11 0 chrX 334501 335044 -162264886 - MER41A LTR ERV1 0 554 6 3172 166 46 88 chrX 335049 335628 -162264302 - LTR39 LTR ERV1 -8 775 238 1960 135 10 10 chrX 335628 335916 -162264014 + AluSx SINE Alu 1 288 -24 3172 166 46 88 chrX 335916 336145 -162263785 - LTR39 LTR ERV1 -545 238 1 334 278 21 10 chrX 336899 336996 -162262934 - MER5A DNA MER1_type -86 103 6 1297 178 9 0 chrX 337005 337235 -162262695 - MLT1B LTR MaLR -1 389 158 1152 175 5 24 chrX 337235 337472 -162262458 - MLT1B LTR MaLR 0 467 159 2197 167 8 13 chrX 337473 337862 -162262068 - MLT1B LTR MaLR 0 390 4 1980 195 4 30 chrX 337891 338185 -162261745 - MLT1B LTR MaLR 0 396 111 2162 69 33 33 chrX 338185 338488 -162261442 - AluY SINE Alu -8 303 1 1980 195 4 30 chrX 338488 338597 -162261333 - MLT1B LTR MaLR -285 111 1 938 97 0 156 chrX 338750 338936 -162260994 - AluSg/x SINE Alu -18 292 136 792 254 46 0 chrX 339634 339831 -162260099 - MER20 DNA MER1_type 0 219 14 602 149 19 7 chrX 339849 340003 -162259927 + (TAGA)n Simple_repeat Simple_repeat 2 157 0 327 194 37 37 chrX 340014 340122 -162259808 + (TAGA)n Simple_repeat Simple_repeat 4 111 0 865 228 47 9 chrX 340139 340350 -162259580 - MER20 DNA MER1_type 0 219 1 337 194 62 131 chrX 340536 340696 -162259234 + MER5A DNA MER1_type 41 189 0 2188 125 0 0 chrX 340940 341252 -162258678 - AluSx SINE Alu 0 312 1 3947 179 80 9 chrX 341487 342258 -162257672 + LTR1B LTR ERV1 1 826 0 1034 187 41 8 chrX 342344 342590 -162257340 - L1MA4 LINE L1 -1 6299 6046 1033 109 14 0 chrX 342886 343033 -162256897 - L1PA10 LINE L1 0 6168 6020 3628 124 26 0 chrX 343293 343833 -162256097 + MER41A LTR ERV1 1 554 0 263 280 17 68 chrX 343961 343986 -162255944 + MIR SINE MIR 111 136 -126 3471 69 21 5 chrX 343986 344423 -162255507 + MLT2A1 LTR ERVL 1 444 0 263 280 17 68 chrX 344423 344515 -162255415 + MIR SINE MIR 136 222 -40 1389 222 0 10 chrX 344546 344857 -162255073 + AluJo SINE Alu 5 312 0 1549 161 3 89 chrX 344857 345066 -162254864 - MER47A DNA MER2_type -2016 307 136 1869 128 24 14 chrX 345066 345363 -162254567 + AluSq SINE Alu 1 300 -13 1549 161 3 89 chrX 345363 345489 -162254441 - MER47A DNA MER2_type -2187 136 1 2150 113 0 0 chrX 347820 348112 -162251818 - AluSx SINE Alu -18 294 3 504 158 0 0 chrX 348170 348265 -162251665 + (TG)n Simple_repeat Simple_repeat 1 95 0 897 230 0 0 chrX 348378 348574 -162251356 + L1MB5 LINE L1 5810 6005 -169 558 191 0 9 chrX 348577 348682 -162251248 + MLT1C LTR MaLR 1 104 -363 464 80 0 148 chrX 348687 348721 -162251209 + MADE1 DNA Mariner 6 21 -59 2126 118 0 0 chrX 348721 349017 -162250913 - AluSg SINE Alu -14 296 1 464 80 0 148 chrX 349017 349070 -162250860 + MADE1 DNA Mariner 21 80 0 1074 158 136 5 chrX 349072 349293 -162250637 + MLT1C LTR MaLR 105 354 -113 1914 117 0 21 chrX 349294 349576 -162250354 + AluSx SINE Alu 1 276 -36 794 155 8 24 chrX 349576 349837 -162250093 + GA-rich Low_complexity Low_complexity 1 257 0 522 254 0 30 chrX 349837 349971 -162249959 + MLT1C LTR MaLR 338 467 0 629 189 13 75 chrX 349985 350101 -162249829 + L1MB5 LINE L1 6026 6131 -43 1664 115 58 0 chrX 350101 350361 -162249569 + AluSx SINE Alu 22 296 -16 629 189 13 75 chrX 350361 350403 -162249527 + L1MB5 LINE L1 6131 6174 0 643 207 191 104 chrX 350548 350762 -162249168 - MER58B DNA MER1_type -2079 341 90 1953 122 3 0 chrX 350762 351050 -162248880 + AluSx SINE Alu 1 289 -23 643 207 191 104 chrX 351050 351144 -162248786 - MER58B DNA MER1_type -2330 90 6 2103 124 0 6 chrX 351539 351853 -162248077 + AluSx SINE Alu 1 312 0 3364 80 0 13 chrX 352060 352510 -162247420 + MLT2A1 LTR ERVL 1 444 0 2044 123 3 0 chrX 353143 353436 -162246494 + AluSx SINE Alu 1 294 -18 225 0 0 0 chrX 353481 353506 -162246424 + (CA)n Simple_repeat Simple_repeat 2 26 0 308 277 50 0 chrX 353737 353856 -162246074 + L1M4 LINE L1 3851 3975 -2171 2321 65 0 19 chrX 353924 354232 -162245698 - AluSc SINE Alu -7 302 1 1095 95 0 0 chrX 354626 354774 -162245156 + AluSc SINE Alu 1 148 -161 276 111 0 0 chrX 356255 356300 -162243630 + (A)n Simple_repeat Simple_repeat 1 45 0 2280 90 0 0 chrX 356621 356921 -162243009 + AluSx SINE Alu 1 300 -12 186 271 21 0 chrX 357054 357102 -162242828 - L2 LINE L2 -4 3309 3261 2122 81 0 52 chrX 358819 359146 -162240784 - AluSp SINE Alu 0 313 2 1862 134 0 13 chrX 359188 359487 -162240443 + AluSx SINE Alu 2 296 -16 1580 141 6 72 chrX 359772 360091 -162239839 + AluJo SINE Alu 1 298 -14 1616 95 9 0 chrX 360204 360426 -162239504 - AluSg/x SINE Alu -17 293 70 2218 103 6 3 chrX 361145 361456 -162238474 + AluSx SINE Alu 1 312 0 2180 97 7 3 chrX 361466 361774 -162238156 + AluSc SINE Alu 1 309 0 243 0 0 0 chrX 362041 362068 -162237862 + (TTTA)n Simple_repeat Simple_repeat 3 29 0 2200 83 0 0 chrX 362078 362366 -162237564 - AluY SINE Alu -23 288 1 2473 71 0 0 chrX 362710 363021 -162236909 - AluY SINE Alu 0 311 1 517 289 168 43 chrX 364092 364335 -162235595 + HAL1 LINE L1 881 1092 -3314 2240 116 0 0 chrX 364335 364645 -162235285 + AluSx SINE Alu 1 310 -2 517 289 168 43 chrX 364645 364823 -162235107 + HAL1 LINE L1 1092 3227 -1179 578 218 12 18 chrX 365773 366120 -162233810 + GA-rich Low_complexity Low_complexity 1 344 0 376 226 33 13 chrX 366133 366501 -162233429 + GA-rich Low_complexity Low_complexity 1 375 0 401 41 0 0 chrX 366843 366892 -162233038 - MADE1 DNA Mariner -2 78 30 314 77 19 58 chrX 366887 366939 -162232991 + AluJo SINE Alu 93 142 -160 * 327 107 160 107 chrX 366931 367006 -162232924 - AluJo SINE Alu -130 172 94 * 371 80 0 0 chrX 367002 367052 -162232878 + MADE1 DNA Mariner 30 79 -1 2257 79 7 3 chrX 367328 367633 -162232297 - AluSx SINE Alu -6 306 1 1496 111 0 9 chrX 367981 368198 -162231732 - AluSg/x SINE Alu 0 309 95 21 0 0 0 chrX 368445 368466 -162231464 + AT_rich Low_complexity Low_complexity 1 21 0 2205 101 0 0 chrX 368469 368765 -162231165 + AluY SINE Alu 1 296 -15 1769 161 0 3 chrX 368769 369068 -162230862 - AluJo SINE Alu -12 300 3 974 127 11 14 chrX 369325 369616 -162230314 + THE1C LTR MaLR 1 375 0 1971 110 20 17 chrX 369805 370106 -162229824 + AluSx SINE Alu 1 302 -10 2106 109 30 0 chrX 370445 370747 -162229183 + AluSx SINE Alu 1 311 -1 2170 95 3 0 chrX 371164 371459 -162228471 + AluSq SINE Alu 1 296 -17 2350 72 0 10 chrX 371782 372088 -162227842 - AluY SINE Alu -8 303 1 1938 104 4 0 chrX 373028 373298 -162226632 + AluSx SINE Alu 1 271 -41 180 0 0 0 chrX 373308 373328 -162226602 + (CAAAA)n Simple_repeat Simple_repeat 1 20 0 23 42 0 21 chrX 373509 373539 -162226391 + AT_rich Low_complexity Low_complexity 1 31 -16 1532 191 3 10 chrX 373539 373827 -162226103 - AluJo SINE Alu -26 286 1 23 42 0 21 chrX 373827 373844 -162226086 + AT_rich Low_complexity Low_complexity 31 47 0 1987 105 0 33 chrX 373860 374028 -162225902 - AluSx SINE Alu -17 295 140 1967 124 24 0 chrX 374028 374318 -162225612 - AluSx SINE Alu -15 297 1 1987 105 0 33 chrX 374318 374454 -162225476 - AluSx SINE Alu -172 140 1 546 155 0 0 chrX 374900 374997 -162224933 + CT-rich Low_complexity Low_complexity 4 100 0 1367 118 0 15 chrX 376398 376622 -162223308 + AluSq SINE Alu 82 302 0 22 0 0 0 chrX 376798 376820 -162223110 + AT_rich Low_complexity Low_complexity 1 22 0 248 302 77 47 chrX 376882 377345 -162222585 + L1ME4a LINE L1 5481 5962 -159 1554 186 0 39 chrX 377345 377656 -162222274 + AluJo SINE Alu 1 299 -13 248 302 77 47 chrX 377656 377699 -162222231 + L1ME4a LINE L1 5962 6002 -119 2197 109 0 3 chrX 378017 378320 -162221610 + AluSx SINE Alu 3 304 -8 650 209 40 57 chrX 378808 378985 -162220945 - MER45A DNA AcHobo -4 174 1 209 232 20 71 chrX 379463 379562 -162220368 + GA-rich Low_complexity Low_complexity 2 95 0 2407 74 0 3 chrX 380272 380582 -162219348 + AluY SINE Alu 1 309 -2 1846 139 36 0 chrX 380710 381012 -162218918 + AluSq SINE Alu 1 313 0 2110 113 0 3 chrX 381574 381876 -162218054 - AluSx SINE Alu -11 301 1 1164 154 45 136 chrX 382274 382604 -162217326 + AluJo SINE Alu 1 300 -2 2204 103 0 0 chrX 382624 382924 -162217006 + AluSg SINE Alu 1 300 -10 844 231 138 7 chrX 382934 383239 -162216691 + MLT1C LTR MaLR 1 361 -144 1411 254 58 27 chrX 383254 383702 -162216228 + MLT1C LTR MaLR 6 467 0 686 226 6 19 chrX 384088 384247 -162215683 + Tigger1 DNA MER2_type 1 157 -2261 * 845 155 139 0 chrX 384240 384427 -162215503 + Tigger1 DNA MER2_type 2206 2418 0 21 36 0 0 chrX 384554 384582 -162215348 + AT_rich Low_complexity Low_complexity 1 28 0 286 243 108 0 chrX 384585 384696 -162215234 + MER69 DNA AcHobo 2313 2435 -91 512 267 21 15 chrX 385387 385714 -162214216 + (TG)n Simple_repeat Simple_repeat 1 328 0 207 216 21 21 chrX 385716 385813 -162214117 + (TATG)n Simple_repeat Simple_repeat 4 100 0 * 433 232 0 11 chrX 385800 385981 -162213949 + (TG)n Simple_repeat Simple_repeat 2 180 0 450 326 6 6 chrX 386018 386196 -162213734 + (TG)n Simple_repeat Simple_repeat 2 179 0 2240 163 21 74 chrX 386531 386889 -162213041 - L1MA8 LINE L1 -111 6180 5805 2228 99 17 7 chrX 386889 387183 -162212747 - AluSx SINE Alu -15 297 1 2240 163 21 74 chrX 387183 387247 -162212683 - L1MA8 LINE L1 -486 5805 5739 358 247 0 0 chrX 387247 387340 -162212590 - L1MB8 LINE L1 -3 6175 6083 2240 163 21 74 chrX 387340 387473 -162212457 - L1MA8 LINE L1 -552 5739 5653 319 213 11 85 chrX 387492 387586 -162212344 - L1MC4 LINE L1 -1339 6703 6617 306 227 10 82 chrX 387605 387702 -162212228 - L1MC4 LINE L1 -1339 6703 6614 300 239 44 62 chrX 387638 387751 -162212179 + L1MC3 LINE L1 6569 6679 -1106 * 2353 99 0 7 chrX 387770 388073 -162211857 + AluSg SINE Alu 1 301 -9 422 363 0 11 chrX 389184 389366 -162210564 + (TG)n Simple_repeat Simple_repeat 1 180 0 261 296 52 23 chrX 389381 389553 -162210377 + (CATG)n Simple_repeat Simple_repeat 2 178 0 * 337 368 0 16 chrX 389463 389696 -162210234 + (TG)n Simple_repeat Simple_repeat 1 229 0 184 111 44 22 chrX 389696 389741 -162210189 + (CATG)n Simple_repeat Simple_repeat 3 48 0 1955 163 0 7 chrX 391570 391890 -162208040 - AluSx SINE Alu 0 312 4 1325 89 6 0 chrX 391942 392110 -162207820 + AluSg/x SINE Alu 120 288 -22 25 0 0 0 chrX 392110 392135 -162207795 + AT_rich Low_complexity Low_complexity 1 25 0 2415 77 0 3 chrX 392552 392863 -162207067 - AluY SINE Alu -1 310 1 859 235 46 42 chrX 393191 393476 -162206454 + L1MA8 LINE L1 6004 6289 -2 1866 159 0 3 chrX 393926 394216 -162205714 + AluJb SINE Alu 1 289 -23 1992 153 36 0 chrX 394218 394519 -162205411 + AluSx SINE Alu 1 312 0 257 283 35 55 chrX 394793 394938 -162204992 + MER5A DNA MER1_type 22 163 -26 414 0 0 0 chrX 395289 395335 -162204595 + (CA)n Simple_repeat Simple_repeat 2 47 0 2103 261 45 24 chrX 395361 395852 -162204078 + MER82 DNA MER2_type 9 488 -165 2285 91 3 23 chrX 395852 396160 -162203770 + AluSx SINE Alu 1 302 -10 2103 261 45 24 chrX 396160 396200 -162203730 + MER82 DNA MER2_type 488 526 -127 896 153 0 13 chrX 396200 396357 -162203573 + L1PA14 LINE L1 6007 6161 0 2103 261 45 24 chrX 396357 396452 -162203478 + MER82 DNA MER2_type 526 649 -4 348 304 0 65 chrX 396662 396800 -162203130 + L2 LINE L2 2951 3079 -193 520 247 96 14 chrX 396866 397012 -162202918 + MER5B DNA MER1_type 6 163 -15 533 244 0 6 chrX 397647 397819 -162202111 + (TGGG)n Simple_repeat Simple_repeat 2 172 0 894 208 0 6 chrX 397836 398156 -162201774 + (TGGA)n Simple_repeat Simple_repeat 1 317 0 527 195 18 6 chrX 398170 398339 -162201591 + (TGGA)n Simple_repeat Simple_repeat 3 173 0 954 156 0 0 chrX 398355 398606 -162201324 + (TGGA)n Simple_repeat Simple_repeat 1 251 0 218 345 86 0 chrX 398891 399007 -162200923 + MIR SINE MIR 66 191 -71 1467 197 52 7 chrX 399184 399473 -162200457 + AluSx SINE Alu 1 302 -10 2272 118 0 0 chrX 399473 399778 -162200152 + AluSg SINE Alu 1 305 -5 318 87 0 0 chrX 399781 399827 -162200103 + (GAAAA)n Simple_repeat Simple_repeat 5 50 0 1093 176 0 11 chrX 399829 400017 -162199913 + AluJo SINE Alu 118 303 -9 1244 208 0 0 chrX 400257 400464 -162199466 + AluJo SINE Alu 84 290 -22 1741 172 57 7 chrX 400472 400769 -162199161 + AluJo SINE Alu 1 312 0 2096 101 0 7 chrX 402272 402550 -162197380 + AluSq SINE Alu 35 310 -3 1442 206 77 3 chrX 402634 402998 -162196932 + MER34B LTR ERV1 148 538 -27 2046 136 0 0 chrX 403017 403303 -162196627 + AluSx SINE Alu 11 296 -16 1192 185 20 0 chrX 403314 403514 -162196416 + AluJo SINE Alu 86 289 -23 1316 175 5 0 chrX 403521 403727 -162196203 + AluSg/x SINE Alu 86 292 -20 2093 124 0 7 chrX 404173 404472 -162195458 - AluSx SINE Alu -15 297 1 602 271 15 20 chrX 404924 405127 -162194803 - MER20 DNA MER1_type 0 219 18 408 103 10 113 chrX 405720 405817 -162194113 + AluSc SINE Alu 221 307 -2 22 35 0 0 chrX 407722 407751 -162192179 + GC_rich Low_complexity Low_complexity 1 29 0 2316 97 7 0 chrX 408939 409247 -162190683 + AluSx SINE Alu 1 310 -2 2402 149 36 24 chrX 409249 409829 -162190101 - MER4E LTR ERV1 -7 759 19 1888 133 0 14 chrX 409829 410108 -162189822 - AluSx SINE Alu -1 311 37 2402 149 36 24 chrX 410108 410128 -162189802 - MER4E LTR ERV1 -747 19 1 4324 47 4 25 chrX 410221 410257 -162189673 - L1PA7 LINE L1 -2 6152 6117 2584 50 0 10 chrX 410257 410558 -162189372 + AluY SINE Alu 1 298 -13 4324 47 4 25 chrX 410558 411076 -162188854 - L1PA7 LINE L1 -37 6117 5610 1947 148 34 0 chrX 412406 412704 -162187226 - AluSq SINE Alu -5 308 1 450 176 0 0 chrX 412813 412898 -162187032 + (CA)n Simple_repeat Simple_repeat 1 85 0 2500 103 0 0 chrX 413147 413459 -162186471 + AluSx SINE Alu 1 312 0 1925 139 43 10 chrX 413489 413790 -162186140 + AluSx SINE Alu 1 311 -1 892 118 0 7 chrX 413859 413995 -162185935 + MSTA LTR MaLR 1 135 -293 391 106 152 0 chrX 413995 414061 -162185869 + MSTA LTR MaLR 353 428 0 1241 81 81 11 chrX 414061 414120 -162185810 + Charlie3 DNA MER1_type 2509 2562 -144 261 0 0 0 chrX 414120 414149 -162185781 + (TAA)n Simple_repeat Simple_repeat 3 31 0 1241 81 81 11 chrX 414149 414274 -162185656 + Charlie3 DNA MER1_type 2562 2706 0 306 298 48 0 chrX 414307 414391 -162185539 + L1MC3 LINE L1 7163 7250 -535 726 172 0 29 chrX 414396 414642 -162185288 + (TGGA)n Simple_repeat Simple_repeat 1 238 0 2309 95 0 10 chrX 414709 415013 -162184917 - AluY SINE Alu -10 301 1 2498 87 3 0 chrX 415013 415322 -162184608 - AluSp SINE Alu -2 311 1 752 203 0 0 chrX 415679 415812 -162184118 - FLAM_A SINE Alu 0 133 1 1242 168 33 5 chrX 415855 416069 -162183861 - AluJo SINE Alu -92 220 1 1323 217 91 29 chrX 416506 416856 -162183074 + MLT1A2 LTR MaLR 1 372 -2 226 267 13 40 chrX 416994 417069 -162182861 + MLT1J2 LTR MaLR 58 130 -320 383 299 7 95 chrX 417076 417380 -162182550 + MLT1J LTR MaLR 171 447 -64 624 263 10 0 chrX 417576 417872 -162182058 + (TGGA)n Simple_repeat Simple_repeat 1 299 0 801 213 0 0 chrX 417922 418197 -162181733 + (TGGA)n Simple_repeat Simple_repeat 1 275 0 630 208 0 0 chrX 418218 418372 -162181558 + (TGGA)n Simple_repeat Simple_repeat 4 157 0 231 125 0 0 chrX 419353 419393 -162180537 + (CA)n Simple_repeat Simple_repeat 1 40 0 2264 105 3 3 chrX 419518 419822 -162180108 + AluSg SINE Alu 1 304 -6 547 283 112 0 chrX 419830 420017 -162179913 - MLT1G1 LTR MaLR -381 214 7 182 326 62 62 chrX 420377 420570 -162179360 - L2 LINE L2 -218 3054 2862 1404 193 12 0 chrX 420578 420821 -162179109 + AluJo SINE Alu 54 299 -13 968 261 94 12 chrX 420836 421166 -162178764 + MLT1H LTR MaLR 185 541 -8 239 229 0 0 chrX 421957 422005 -162177925 + (TG)n Simple_repeat Simple_repeat 1 48 0 2268 109 13 0 chrX 422149 422451 -162177479 + AluSx SINE Alu 1 306 -6 320 305 80 45 chrX 422594 422794 -162177136 - L1MD3 LINE L1 0 7995 7789 2486 96 0 0 chrX 423046 423358 -162176572 + AluSx SINE Alu 1 312 0 1836 141 12 6 chrX 423503 423822 -162176108 + L1PB2 LINE L1 5521 5841 -310 384 163 20 82 chrX 424453 424551 -162175379 - L2 LINE L2 0 3313 3222 2028 273 61 30 chrX 424555 425511 -162174419 - L2 LINE L2 -49 3264 2153 8348 52 15 3 chrX 425639 426774 -162173156 + L1PA13 LINE L1 3682 4830 -1316 5298 113 1 4 chrX 426875 427686 -162172244 + L1PA13 LINE L1 5355 6163 0 1702 81 5 14 chrX 427686 427907 -162172023 + AluY SINE Alu 1 219 -92 3500 148 48 17 chrX 428009 428433 -162171497 + L1M1 LINE L1 2977 3386 -4179 297 0 0 0 chrX 428433 428466 -162171464 + (CA)n Simple_repeat Simple_repeat 2 34 0 3500 148 48 17 chrX 428466 429025 -162170905 + L1M1 LINE L1 3386 3994 -3571 401 155 24 60 chrX 429180 429264 -162170666 + MLT1D LTR MaLR 5 85 -420 662 167 35 7 chrX 429271 429415 -162170515 + MER96B DNA MER1_type? 265 412 -5 356 353 78 7 chrX 429440 429593 -162170337 + L2 LINE L2 3107 3270 -2 307 295 84 0 chrX 429733 429828 -162170102 - L1MC4 LINE L1 -1340 6702 6600 423 123 41 0 chrX 431295 431368 -162168562 - L1MA3 LINE L1 -5 6300 6225 703 289 58 5 chrX 432162 432370 -162167560 + MIR SINE MIR 41 259 -3 367 205 137 87 chrX 432472 432633 -162167297 + L2 LINE L2 2622 2790 -524 8004 61 8 0 chrX 434048 435096 -162164834 + L1P LINE L1 1400 2455 -3691 292 251 128 21 chrX 435208 435403 -162164527 - MLT1C LTR MaLR -147 358 127 1235 196 27 4 chrX 435403 435663 -162164267 - L1MB5 LINE L1 -100 6074 5809 667 297 114 0 chrX 436835 437054 -162162876 - MIR SINE MIR 0 262 19 212 152 15 106 chrX 437060 437126 -162162804 + MIR SINE MIR 101 160 -102 2061 132 3 0 chrX 437406 437716 -162162214 + AluSx SINE Alu 1 311 -1 817 125 8 0 chrX 437718 437846 -162162084 + L1PB2 LINE L1 6023 6151 0 1060 204 103 43 chrX 438157 438219 -162161711 - MLT1C LTR MaLR -6 461 404 2019 125 3 0 chrX 438219 438515 -162161415 + AluSx SINE Alu 4 300 -12 1060 204 103 43 chrX 438515 438781 -162161149 - MLT1C LTR MaLR -63 404 113 1093 171 11 0 chrX 438789 438976 -162160954 + MLT1B LTR MaLR 1 189 -201 700 212 71 119 chrX 438989 439201 -162160729 - MLT1C LTR MaLR -143 324 134 2021 114 0 0 chrX 439201 439490 -162160440 - AluSx SINE Alu -23 289 1 700 212 71 119 chrX 439490 439618 -162160312 - MLT1C LTR MaLR -333 134 1 767 248 109 8 chrX 439628 439933 -162159997 - MLT1C LTR MaLR -122 345 1 262 310 43 17 chrX 439951 440067 -162159863 - LTR33 LTR ERVL -370 151 33 2289 94 0 0 chrX 440142 440441 -162159489 + AluSg SINE Alu 1 299 -11 2242 95 10 0 chrX 441130 441436 -162158494 + AluSx SINE Alu 1 309 -3 670 166 19 39 chrX 442088 442604 -162157326 + (TAGA)n Simple_repeat Simple_repeat 1 800 -25 1649 196 0 0 chrX 442604 442905 -162157025 + AluJo SINE Alu 1 301 -11 670 166 19 39 chrX 442905 442931 -162156999 + (TAGA)n Simple_repeat Simple_repeat 800 825 0 334 247 26 0 chrX 443046 443123 -162156807 - MER20 DNA MER1_type 0 219 141 717 243 17 6 chrX 443149 443322 -162156608 + MLT1B LTR MaLR 293 467 0 2172 93 3 3 chrX 443377 443678 -162156252 - AluSq SINE Alu -12 301 1 649 193 96 0 chrX 443679 443814 -162156116 - MLT1A1 LTR MaLR -208 157 10 1787 157 10 3 chrX 443855 444154 -162155776 - MLT1A1 LTR MaLR -64 301 1 2273 89 0 0 chrX 444433 444735 -162155195 + AluY SINE Alu 1 302 -9 2023 123 3 3 chrX 444928 445230 -162154700 + AluSx SINE Alu 1 302 -10 485 234 0 19 chrX 445717 445824 -162154106 + MER5A DNA MER1_type 1 105 -84 2203 249 38 23 chrX 445904 446430 -162153500 - MER87 LTR ERV1 -7 534 1 233 69 0 0 chrX 446664 446693 -162153237 + (GA)n Simple_repeat Simple_repeat 1 29 0 580 161 27 13 chrX 446693 446842 -162153088 + GA-rich Low_complexity Low_complexity 4 154 0 2108 100 3 7 chrX 447426 447726 -162152204 + AluSx SINE Alu 6 304 -8 1195 168 21 66 chrX 447896 448027 -162151903 - L1MA8 LINE L1 0 6291 6156 2015 122 0 0 chrX 448027 448322 -162151608 - AluY SINE Alu -16 295 1 1195 168 21 66 chrX 448322 448476 -162151454 - L1MA8 LINE L1 -135 6156 6019 2025 227 92 50 chrX 448487 448632 -162151298 - MER50 LTR ERV1 -7 727 589 2179 106 0 3 chrX 448632 448934 -162150996 - AluSg SINE Alu -9 301 1 2025 227 92 50 chrX 448934 449360 -162150570 - MER50 LTR ERV1 -145 589 119 1743 100 104 11 chrX 449360 449629 -162150301 - AluSg1 SINE Alu -15 294 1 2025 227 92 50 chrX 449629 449753 -162150177 - MER50 LTR ERV1 -615 119 2 1031 165 11 21 chrX 449753 449941 -162149989 - L1MA8 LINE L1 -276 6015 5830 633 110 0 0 chrX 449945 450036 -162149894 - AluSg/x SINE Alu -6 304 214 1955 96 0 7 chrX 450370 450642 -162149288 + AluSx SINE Alu 43 312 0 730 84 0 0 chrX 451081 451176 -162148754 + AluY SINE Alu 2 96 -215 632 105 62 18 chrX 451279 451788 -162148142 + GA-rich Low_complexity Low_complexity 1 531 0 1870 155 153 27 chrX 451895 452307 -162147623 + MER4C LTR ERV1 1 464 -1 21 0 0 0 chrX 452449 452470 -162147460 + GC_rich Low_complexity Low_complexity 1 21 0 407 223 9 0 chrX 453067 453179 -162146751 + (TGGA)n Simple_repeat Simple_repeat 4 116 0 180 368 69 11 chrX 453306 453393 -162146537 - MIR3 SINE MIR -114 94 3 412 250 0 17 chrX 453662 453778 -162146152 + AluSp SINE Alu 2 115 -198 344 186 0 0 chrX 453778 453837 -162146093 + MLT1C LTR MaLR 357 415 -52 1664 161 4 0 chrX 453848 454127 -162145803 - AluSx SINE Alu -29 283 4 817 125 8 0 chrX 454501 454629 -162145301 - L1PB2 LINE L1 0 6151 6023 2029 134 0 6 chrX 454631 454944 -162144986 - AluSx SINE Alu -1 311 1 514 208 102 19 chrX 455477 455646 -162144284 - MER39 LTR ERV1 -1 687 471 705 133 0 9 chrX 455646 455773 -162144157 - AluSx SINE Alu 0 309 189 685 89 11 0 chrX 455770 455860 -162144070 - AluSx SINE Alu -205 107 17 * 842 197 40 100 chrX 455860 455920 -162144010 - MER39 LTR ERV1 -178 529 467 4376 69 9 0 chrX 455920 456468 -162143462 - MER41A LTR ERV1 -1 553 1 842 197 40 100 chrX 456468 456706 -162143224 - MER39 LTR ERV1 -240 467 249 242 196 20 0 chrX 456719 456770 -162143160 - MER39 LTR ERV1 -655 52 1 1701 119 4 8 chrX 457130 457381 -162142549 - L1P4 LINE L1 -575 5593 5344 344 221 0 0 chrX 457382 457459 -162142471 - MER4D LTR ERV1 -512 360 284 1831 145 20 7 chrX 457463 457767 -162142163 - AluSx SINE Alu -4 308 1 874 126 33 44 chrX 457771 457954 -162141976 - Tigger7 DNA MER2_type -92 2395 2215 1716 153 78 54 chrX 458010 458077 -162141853 - MSTA LTR MaLR -5 423 359 1995 85 11 7 chrX 458077 458358 -162141572 + AluSx SINE Alu 1 282 -30 180 0 0 0 chrX 458361 458381 -162141549 + (CA)n Simple_repeat Simple_repeat 1 20 0 1716 153 78 54 chrX 458381 458681 -162141249 - MSTA LTR MaLR -70 358 43 1149 107 24 0 chrX 458781 458949 -162140981 + AluSg/x SINE Alu 136 307 -5 2036 110 3 0 chrX 459373 459664 -162140266 - AluSx SINE Alu -18 294 3 290 315 153 20 chrX 459908 460111 -162139819 + MARNA DNA Mariner 104 333 -253 2242 107 3 0 chrX 461130 461440 -162138490 - AluSx SINE Alu -1 311 1 254 136 0 0 chrX 461692 461736 -162138194 - Alu SINE Alu -2 298 255 756 233 3 6 chrX 461836 462195 -162137735 + (TCCA)n Simple_repeat Simple_repeat 1 358 0 368 292 21 108 chrX 462388 462524 -162137406 - MLT1J LTR MaLR -64 447 338 2185 78 0 0 chrX 462524 462842 -162137088 + AluSg SINE Alu 1 318 0 368 292 21 108 chrX 462842 462944 -162136986 - MLT1J LTR MaLR -173 338 229 180 111 0 0 chrX 462944 462971 -162136959 + (A)n Simple_repeat Simple_repeat 1 27 0 355 302 92 83 chrX 463961 464518 -162135412 + L1MB5 LINE L1 3884 4445 -1701 2053 136 3 0 chrX 464553 464862 -162135068 + AluSx SINE Alu 1 310 -2 825 119 0 0 chrX 465192 465310 -162134620 + AluSq SINE Alu 41 158 -155 375 345 58 11 chrX 465465 465656 -162134274 + L1MB5 LINE L1 5481 5680 -441 659 256 17 0 chrX 466328 466500 -162133430 - MER45A DNA AcHobo -3 175 1 1835 153 0 25 chrX 466569 466889 -162133041 + AluSx SINE Alu 1 312 0 2047 202 8 0 chrX 467329 467720 -162132210 + L1MB5 LINE L1 5745 6138 -36 2403 76 0 0 chrX 467724 468028 -162131902 + AluSg SINE Alu 1 304 -6 1394 182 14 17 chrX 468038 468334 -162131596 + AluJo SINE Alu 1 295 -17 218 237 31 31 chrX 469307 469404 -162130526 + GA-rich Low_complexity Low_complexity 2 98 0 832 145 0 22 chrX 469653 469791 -162130139 + AluJo SINE Alu 1 135 -177 327 161 0 0 chrX 470785 470841 -162129089 + L1MA7 LINE L1 6233 6288 -3 1933 104 0 0 chrX 470850 471118 -162128812 + AluSg SINE Alu 39 306 -4 897 254 40 40 chrX 471302 471601 -162128329 + Charlie4a DNA MER1_type 12 310 -198 214 245 0 47 chrX 472744 472850 -162127080 + C-rich Low_complexity Low_complexity 4 104 0 1953 112 0 3 chrX 472950 473236 -162126694 + AluSx SINE Alu 14 298 -14 181 0 33 33 chrX 473238 473268 -162126662 + (TATAA)n Simple_repeat Simple_repeat 4 33 0 2278 75 0 7 chrX 473757 474063 -162125867 + AluY SINE Alu 1 304 -7 1478 198 0 24 chrX 474262 474555 -162125375 - AluJb SINE Alu -19 293 8 237 232 0 0 chrX 474604 474673 -162125257 + GA-rich Low_complexity Low_complexity 2 70 0 309 236 28 28 chrX 474749 474855 -162125075 - MLT1J2 LTR MaLR 0 450 345 1240 202 12 62 chrX 475266 475314 -162124616 + L1MB8 LINE L1 5569 5618 -560 2123 114 91 26 chrX 475314 475656 -162124274 - THE1B LTR MaLR 0 364 1 1240 202 12 62 chrX 475656 475927 -162124003 + L1MB8 LINE L1 5618 5873 -305 1689 163 0 43 chrX 475927 476253 -162123677 + AluSx SINE Alu 1 312 0 1240 202 12 62 chrX 476253 476268 -162123662 + L1MB8 LINE L1 5873 5887 -291 274 109 43 0 chrX 476312 476358 -162123572 - MER34C LTR ERV1 -533 52 5 * 354 123 46 0 chrX 476326 476391 -162123539 - MER34C LTR ERV1 -512 73 6 382 275 50 102 chrX 477332 477632 -162122298 - LTR16C LTR ERVL -14 477 153 2392 156 51 10 chrX 477632 478043 -162121887 - MSTA LTR MaLR 0 428 1 382 275 50 102 chrX 478043 478148 -162121782 - LTR16C LTR ERVL -338 153 44 3741 121 23 62 chrX 478445 478558 -162121372 - MER41B LTR ERV1 0 635 519 1689 199 0 0 chrX 478558 478864 -162121066 + AluJo SINE Alu 1 306 -6 3741 121 23 62 chrX 478864 479411 -162120519 - MER41B LTR ERV1 -116 519 1 2268 97 0 3 chrX 479424 479732 -162120198 + AluSq SINE Alu 1 307 -6 1475 231 89 11 chrX 479775 480156 -162119774 + MER87 LTR ERV1 1 411 -130 216 0 0 0 chrX 480298 480322 -162119608 + (TTC)n Simple_repeat Simple_repeat 1 24 0 2186 92 16 0 chrX 480327 480632 -162119298 - AluSg SINE Alu 0 310 1 792 234 8 3 chrX 481534 481930 -162118000 + (TCCA)n Simple_repeat Simple_repeat 1 398 0 724 181 6 6 chrX 481947 482124 -162117806 + (TCCA)n Simple_repeat Simple_repeat 4 180 0 257 322 128 19 chrX 482881 483092 -162116838 + MIR SINE MIR 15 248 -14 2182 121 0 3 chrX 483387 483685 -162116245 + AluSg1 SINE Alu 1 297 -12 746 176 12 44 chrX 483844 484071 -162115859 - L1M4c LINE L1 -4768 1616 1356 1903 185 83 46 chrX 484426 484906 -162115024 + MLT1D LTR MaLR 2 499 -6 2274 97 0 13 chrX 485755 486063 -162113867 - AluY SINE Alu -7 304 1 1403 96 0 5 chrX 486724 486903 -162113027 - AluSg/x SINE Alu -6 306 127 2228 102 7 0 chrX 486903 487187 -162112743 - AluSx SINE Alu -26 286 1 1619 260 48 9 chrX 487438 487877 -162112053 + MLT1D LTR MaLR 1 456 -49 827 181 0 0 chrX 488029 488162 -162111768 - FLAM_C SINE Alu 0 133 1 1888 176 3 0 chrX 488168 488474 -162111456 - AluSx SINE Alu -5 307 1 1720 120 0 4 chrX 489088 489321 -162110609 + AluSg SINE Alu 4 235 -75 1223 123 24 0 chrX 489421 489611 -162110319 + AluSg/x SINE Alu 110 303 0 2340 94 3 0 chrX 490341 490639 -162109291 + AluSp SINE Alu 1 299 -14 307 286 0 0 chrX 490822 490899 -162109031 + (TG)n Simple_repeat Simple_repeat 2 78 0 558 205 3 30 chrX 490904 491239 -162108691 + (TATG)n Simple_repeat Simple_repeat 1 325 0 208 234 0 37 chrX 491263 491370 -162108560 + (TATG)n Simple_repeat Simple_repeat 2 104 0 1702 160 79 18 chrX 491764 492078 -162107852 + MER65A LTR ERV1 82 420 -25 1995 142 80 17 chrX 492078 492480 -162107450 - MSTA LTR MaLR 0 428 2 1702 160 79 18 chrX 492480 492508 -162107422 + MER65A LTR ERV1 420 445 0 319 230 12 21 chrX 493277 493619 -162106311 + (TCTA)n Simple_repeat Simple_repeat 1 338 0 367 170 22 39 chrX 493648 493830 -162106100 + (TCTA)n Simple_repeat Simple_repeat 2 180 0 2363 102 0 0 chrX 494131 494434 -162105496 - AluSx SINE Alu -9 303 1 2364 94 3 0 chrX 494444 494742 -162105188 - AluSp SINE Alu -14 299 1 1248 110 0 0 chrX 495605 495769 -162104161 - AluSg/x SINE Alu -15 295 132 2237 111 0 3 chrX 495769 496075 -162103855 - AluSx SINE Alu -7 305 1 3238 169 9 0 chrX 496192 496732 -162103198 + L1PA16 LINE L1 5584 6128 -38 280 243 9 9 chrX 496878 496985 -162102945 + (TATATG)n Simple_repeat Simple_repeat 1 107 0 239 228 22 65 chrX 496989 497081 -162102849 - L1MC4 LINE L1 -1340 6702 6615 258 300 0 0 chrX 497083 497153 -162102777 + (TA)n Simple_repeat Simple_repeat 1 70 0 272 226 145 70 chrX 497254 497440 -162102490 - L2 LINE L2 -17 3296 3097 1700 204 14 47 chrX 497479 497906 -162102024 + L1M4 LINE L1 5377 5789 -389 310 278 41 0 chrX 498515 498612 -162101318 + MER34C LTR ERV1 1 101 -484 319 198 33 22 chrX 498708 498799 -162101131 - MER90 LTR ERV1 -477 98 7 742 245 58 5 chrX 499334 499542 -162100388 - MLT1D LTR MaLR -286 219 1 198 318 37 28 chrX 500313 500420 -162099510 + L2 LINE L2 2930 3037 -235 192 77 0 0 chrX 500846 500872 -162099058 + (GA)n Simple_repeat Simple_repeat 1 26 0 2287 95 7 0 chrX 501954 502248 -162097682 + AluSg SINE Alu 1 296 -14 2125 109 6 40 chrX 502488 502809 -162097121 + AluSx SINE Alu 1 310 -2 331 328 85 17 chrX 502934 503288 -162096642 + L1ME4a LINE L1 5491 5868 -253 646 274 12 12 chrX 504059 504227 -162095703 - MER45A DNA AcHobo -3 175 8 2314 94 0 10 chrX 505035 505333 -162094597 - AluSg SINE Alu -15 295 1 22 70 0 0 chrX 505451 505494 -162094436 + AT_rich Low_complexity Low_complexity 1 43 0 207 0 0 0 chrX 505874 505897 -162094033 + (CAAAAA)n Simple_repeat Simple_repeat 2 24 0 29 47 0 0 chrX 506700 506743 -162093187 + AT_rich Low_complexity Low_complexity 1 43 0 2198 90 3 21 chrX 506819 507143 -162092787 + AluSx SINE Alu 1 319 0 537 328 6 0 chrX 508005 508179 -162091751 - MER45A DNA AcHobo -3 175 1 254 132 19 0 chrX 508696 508749 -162091181 + GA-rich Low_complexity Low_complexity 1 54 0 1712 170 7 3 chrX 509226 509520 -162090410 - AluJb SINE Alu -17 295 1 268 321 101 26 chrX 510717 511063 -162088867 + L1ME LINE L1 5490 5861 -260 618 273 17 0 chrX 511842 512014 -162087916 - MER45A DNA AcHobo -3 175 1 2092 126 7 0 chrX 512813 513114 -162086816 - AluSp SINE Alu -10 303 1 25 0 0 0 chrX 513254 513279 -162086651 + GC_rich Low_complexity Low_complexity 1 25 0 2522 60 3 3 chrX 513732 514034 -162085896 + AluSp SINE Alu 1 302 -11 1652 178 3 30 chrX 514038 514341 -162085589 + AluJb SINE Alu 2 296 -16 3654 130 42 18 chrX 514961 515412 -162084518 + LTR9 LTR ERV1 1 471 -141 189 0 0 0 chrX 515412 515433 -162084497 + (TC)n Simple_repeat Simple_repeat 2 22 0 3654 130 42 18 chrX 515433 515579 -162084351 + LTR9 LTR ERV1 471 612 0 3852 61 15 81 chrX 515745 516337 -162083593 + MER41A LTR ERV1 2 554 0 2199 109 0 3 chrX 516830 517124 -162082806 + AluSx SINE Alu 16 308 -4 2478 126 37 0 chrX 517124 517506 -162082424 + L1PA11 LINE L1 5779 6174 0 1252 178 50 27 chrX 517521 517779 -162082151 + LTR49 LTR ERV1 98 361 -234 567 177 48 16 chrX 517800 517924 -162082006 - AluJb SINE Alu 0 312 185 22 0 0 0 chrX 517927 517949 -162081981 + AT_rich Low_complexity Low_complexity 1 22 0 280 229 0 0 chrX 517966 518027 -162081903 + AluS SINE Alu 5 65 -238 982 185 0 11 chrX 518390 518574 -162081356 - AluJb SINE Alu -120 192 11 2174 117 0 22 chrX 518603 518920 -162081010 - AluSx SINE Alu 0 312 3 377 198 25 0 chrX 519144 519225 -162080705 + MER3 DNA MER1_type 126 208 -1 1374 157 13 0 chrX 519263 519493 -162080437 - MLT1B LTR MaLR 0 390 158 2082 175 26 8 chrX 519493 519876 -162080054 - MLT1B LTR MaLR 0 390 1 246 62 0 0 chrX 520256 520288 -162079642 + (CG)n Simple_repeat Simple_repeat 2 33 0 * 276 30 0 0 chrX 520287 520320 -162079610 + (CA)n Simple_repeat Simple_repeat 1 33 0 2282 93 3 0 chrX 520423 520713 -162079217 - AluSc SINE Alu -10 299 9 2429 81 0 7 chrX 521413 521722 -162078208 - AluSc SINE Alu -2 307 1 2303 100 0 3 chrX 522394 522695 -162077235 + AluSx SINE Alu 1 300 -12 303 256 53 15 chrX 522695 522828 -162077102 - MER33 DNA MER1_type -19 305 168 42 77 0 0 chrX 522828 522919 -162077011 + AT_rich Low_complexity Low_complexity 1 91 0 267 284 11 17 chrX 522982 523158 -162076772 + (TA)n Simple_repeat Simple_repeat 2 176 0 31 68 0 0 chrX 523177 523236 -162076694 + AT_rich Low_complexity Low_complexity 1 59 0 384 227 34 17 chrX 523263 523349 -162076581 + (TA)n Simple_repeat Simple_repeat 1 84 -95 2289 105 10 0 chrX 523349 523643 -162076287 + AluSp SINE Alu 1 297 -16 384 227 34 17 chrX 523643 523732 -162076198 + (TA)n Simple_repeat Simple_repeat 84 179 0 266 286 19 0 chrX 523760 523921 -162076009 + (TA)n Simple_repeat Simple_repeat 2 165 0 495 185 82 86 chrX 523974 524156 -162075774 - MER33 DNA MER1_type -2353 232 50 2277 187 9 12 chrX 524156 524583 -162075347 + MSTB LTR MaLR 1 426 0 495 185 82 86 chrX 524583 524632 -162075298 - MER33 DNA MER1_type -2535 50 2 2415 77 0 0 chrX 525021 525318 -162074612 + AluY SINE Alu 1 297 -14 625 161 100 0 chrX 525402 525532 -162074398 - L1MC3 LINE L1 -195 7590 7448 306 121 35 17 chrX 525559 525617 -162074313 - MSTB1 LTR MaLR -43 389 331 720 114 9 0 chrX 525711 525816 -162074114 - MSTB1 LTR MaLR 0 432 327 1551 180 200 130 chrX 525818 526073 -162073857 - L1MC3 LINE L1 -340 7445 7209 240 284 12 25 chrX 526073 526154 -162073776 - MLT1F1 LTR MaLR -453 114 35 1551 180 200 130 chrX 526154 526503 -162073427 - L1MC3 LINE L1 -576 7209 6713 1266 233 38 24 chrX 526537 526829 -162073101 + AluJo SINE Alu 1 296 -6 471 214 0 0 chrX 526832 526916 -162073014 + AluJo/FRAM SINE Alu 207 290 -22 243 88 0 0 chrX 528440 528474 -162071456 + (TTA)n Simple_repeat Simple_repeat 1 34 0 2286 75 0 4 chrX 528474 528755 -162071175 - AluSx SINE Alu -32 280 1 2275 84 3 32 chrX 529180 529490 -162070440 - AluSx SINE Alu -7 305 5 1608 181 34 27 chrX 529737 529868 -162070062 + AluJb SINE Alu 6 135 -177 2255 117 0 0 chrX 529868 530175 -162069755 + AluSx SINE Alu 2 308 -4 1608 181 34 27 chrX 530175 530335 -162069595 + AluJb SINE Alu 135 299 -13 282 320 19 77 chrX 530581 530737 -162069193 + MIR SINE MIR 20 166 -96 2191 113 0 35 chrX 530782 531100 -162068830 + AluSx SINE Alu 1 307 -5 2604 86 23 16 chrX 531486 531872 -162068058 + MLT2A1 LTR ERVL 1 389 -55 192 77 0 0 chrX 531872 531898 -162068032 + (TA)n Simple_repeat Simple_repeat 1 26 0 1655 164 32 11 chrX 532268 532579 -162067351 - AluJo SINE Alu 0 317 1 2331 95 3 0 chrX 532794 533090 -162066840 + AluSx SINE Alu 1 297 -15 210 91 0 0 chrX 533106 533139 -162066791 + (CA)n Simple_repeat Simple_repeat 2 34 0 210 258 61 0 chrX 533650 533716 -162066214 - MIR SINE MIR -117 145 76 496 248 10 2 chrX 533848 534262 -162065668 + (TCCA)n Simple_repeat Simple_repeat 1 417 0 350 281 0 6 chrX 534286 534457 -162065473 + (TCCA)n Simple_repeat Simple_repeat 4 173 0 182 266 78 0 chrX 534502 534566 -162065364 + L2 LINE L2 3242 3310 -3 586 227 8 0 chrX 535593 535721 -162064209 - AluJb SINE Alu -7 305 177 627 144 8 23 chrX 535748 535880 -162064050 + CT-rich Low_complexity Low_complexity 3 132 0 909 145 0 0 chrX 535882 536013 -162063917 - FLAM_C SINE Alu -2 131 1 322 287 53 0 chrX 536412 536506 -162063424 + MER5A DNA MER1_type 11 109 -80 2302 105 0 0 chrX 537590 537884 -162062046 + AluSp SINE Alu 2 295 -18 242 357 31 16 chrX 538179 538308 -162061622 - MIR SINE MIR -58 150 20 248 174 43 0 chrX 538361 538407 -162061523 + MLT1D LTR MaLR 1 48 -457 314 125 42 0 chrX 538410 538458 -162061472 + MLT1D LTR MaLR 1 50 -455 284 106 64 0 chrX 538459 538506 -162061424 + MLT1D LTR MaLR 1 50 -455 339 102 20 0 chrX 538507 538556 -162061374 + MLT1D LTR MaLR 1 50 -455 294 143 20 0 chrX 538557 538606 -162061324 + MLT1D LTR MaLR 1 50 -455 307 122 20 0 chrX 538607 538656 -162061274 + MLT1D LTR MaLR 1 50 -455 331 102 20 0 chrX 538657 538706 -162061224 + MLT1D LTR MaLR 1 50 -455 318 104 42 0 chrX 538707 538755 -162061175 + MLT1D LTR MaLR 1 50 -455 2006 203 26 39 chrX 538756 539264 -162060666 + MLT1D LTR MaLR 1 501 -4 2865 62 3 3 chrX 539290 539645 -162060285 + THE1A LTR MaLR 1 355 0 2950 115 2 5 chrX 539650 540092 -162059838 + MER41A LTR ERV1 1 441 -113 2332 85 3 0 chrX 540092 540386 -162059544 - AluSc SINE Alu -9 300 6 2234 119 0 10 chrX 540695 541007 -162058923 + AluSx SINE Alu 4 312 0 272 286 45 52 chrX 541309 541463 -162058467 - MER103 DNA DNA 0 166 14 1901 161 3 10 chrX 541755 542060 -162057870 - AluJb SINE Alu -9 303 1 1798 115 4 4 chrX 542195 542447 -162057483 + AluSq SINE Alu 1 252 -61 1109 271 47 11 chrX 542642 543003 -162056927 - MSTB LTR MaLR -52 374 1 1866 185 34 27 chrX 543208 543755 -162056175 - MLT2A2 LTR ERVL 0 554 1 3124 169 4 24 chrX 543807 544345 -162055585 - MER1A DNA MER1_type 0 527 1 509 313 6 6 chrX 544507 544670 -162055260 - MER63A DNA MER1_type -4 206 44 2064 136 0 0 chrX 545398 545734 -162054196 - AluSx SINE Alu 0 336 1 2249 92 3 7 chrX 545740 546045 -162053885 - AluSx SINE Alu -6 306 3 257 315 167 6 chrX 546330 546492 -162053438 + MARNA DNA Mariner 146 333 -253 2230 105 7 0 chrX 547682 547977 -162051953 - AluSx SINE Alu -12 300 4 825 122 32 0 chrX 547991 548114 -162051816 - FLAM_C SINE Alu -2 131 5 2102 141 0 3 chrX 548517 548821 -162051109 + AluSx SINE Alu 1 303 -9 288 0 0 0 chrX 549001 549033 -162050897 + (CA)n Simple_repeat Simple_repeat 2 33 0 240 283 69 69 chrX 549109 549282 -162050648 + MIR SINE MIR 90 262 0 2388 100 0 3 chrX 549526 549837 -162050093 + AluSg SINE Alu 1 310 0 300 248 116 33 chrX 549997 550118 -162049812 + MIR SINE MIR 23 153 -55 56 61 0 0 chrX 552898 552996 -162046934 + GC_rich Low_complexity Low_complexity 1 98 0 342 283 103 68 chrX 553029 553457 -162046473 - L1M2 LINE L1 -5651 1198 756 192 97 0 0 chrX 553696 553727 -162046203 + (TC)n Simple_repeat Simple_repeat 2 32 0 183 220 0 0 chrX 555044 555094 -162044836 + (TG)n Simple_repeat Simple_repeat 1 50 0 293 219 27 0 chrX 555498 555571 -162044359 + LTR52 LTR ERVL 1 75 -346 685 182 157 6 chrX 555626 555785 -162044145 + MSTA LTR MaLR 1 183 -245 702 237 22 73 chrX 555807 555881 -162044049 + LTR52 LTR ERVL 83 159 -262 2410 102 0 0 chrX 555881 556185 -162043745 + AluSx SINE Alu 1 304 -8 702 237 22 73 chrX 556185 556384 -162043546 + LTR52 LTR ERVL 159 342 -79 1626 189 20 14 chrX 556500 556797 -162043133 + AluJo SINE Alu 7 305 -7 2350 116 0 0 chrX 556859 557169 -162042761 - AluSx SINE Alu -2 310 1 2438 94 0 3 chrX 557580 557888 -162042042 - AluSq SINE Alu -6 307 1 1928 169 10 3 chrX 558367 558674 -162041256 - AluJb SINE Alu -3 309 1 2189 99 0 17 chrX 558750 559042 -162040888 - AluSg SINE Alu 0 310 24 1840 165 12 38 chrX 559179 559536 -162040394 + L1MA4 LINE L1 5896 6260 -40 1357 64 0 6 chrX 559536 559706 -162040224 + L1PA8 LINE L1 5987 6158 -14 261 83 0 0 chrX 559708 559744 -162040186 + (TA)n Simple_repeat Simple_repeat 2 37 0 1840 165 12 38 chrX 559744 559783 -162040147 + L1MA4 LINE L1 6261 6285 -15 3039 131 50 84 chrX 559784 559992 -162039938 + MER4A LTR ERV1 1 215 -385 2200 122 0 16 chrX 559992 560303 -162039627 + AluSq SINE Alu 4 309 -4 3039 131 50 84 chrX 560303 560711 -162039219 + MER4A LTR ERV1 215 596 -4 1277 168 112 56 chrX 561001 561269 -162038661 - AluJb SINE Alu -29 283 1 2021 112 0 69 chrX 561411 561737 -162038193 + AluSx SINE Alu 1 305 0 4936 91 1 24 chrX 561811 562268 -162037662 + PABL_B LTR ERV1 1 440 -227 2042 100 10 45 chrX 562268 562577 -162037353 - AluSx SINE Alu -14 298 1 4936 91 1 24 chrX 562577 562801 -162037129 + PABL_B LTR ERV1 440 667 0 2775 166 100 27 chrX 563137 563856 -162036074 + LTR1B LTR ERV1 1 754 -31 305 119 40 68 chrX 563903 563973 -162035957 + (TCTA)n Simple_repeat Simple_repeat 3 73 -101 2277 119 0 0 chrX 563973 564268 -162035662 + AluSg SINE Alu 2 296 -14 305 119 40 68 chrX 564268 564374 -162035556 + (TCTA)n Simple_repeat Simple_repeat 73 174 0 307 143 0 57 chrX 564383 564453 -162035477 + MLT2B1 LTR ERVL 455 520 0 2367 103 7 0 chrX 564657 564967 -162034963 + AluSq SINE Alu 1 312 -1 2201 125 3 3 chrX 565258 565569 -162034361 - AluSx SINE Alu -1 311 1 1543 177 7 35 chrX 565690 565811 -162034119 + AluJb SINE Alu 1 124 -188 1988 102 18 32 chrX 565811 566096 -162033834 - AluSx SINE Alu -9 303 23 1543 177 7 35 chrX 566096 566257 -162033673 + AluJb SINE Alu 124 275 -37 310 355 128 21 chrX 566283 566573 -162033357 + HAL1 LINE L1 981 1301 -1206 1635 165 4 0 chrX 567076 567331 -162032599 + AluJo SINE Alu 11 266 -46 1496 86 4 78 chrX 567463 567695 -162032235 + AluSg/x SINE Alu 84 298 -14 870 132 0 0 chrX 567697 567818 -162032112 - AluJo/FLAM SINE Alu -189 123 3 2353 99 0 0 chrX 567921 568225 -162031705 + AluSg SINE Alu 1 304 -6 838 237 8 42 chrX 568231 568467 -162031463 - L1MC3 LINE L1 -421 7364 7137 2022 135 4 0 chrX 568645 568962 -162030968 - AluSx SINE Alu 0 319 2 22 56 0 0 chrX 569100 569136 -162030794 + AT_rich Low_complexity Low_complexity 1 36 0 2276 145 0 0 chrX 569308 569619 -162030311 - AluSx SINE Alu 0 312 2 443 301 77 85 chrX 569652 570326 -162029604 + L1ME LINE L1 3 671 -5399 827 172 0 13 chrX 570521 570748 -162029182 + (ATG)n Simple_repeat Simple_repeat 1 224 0 1083 130 0 8 chrX 570767 571132 -162028798 + (ATG)n Simple_repeat Simple_repeat 1 361 0 2392 107 0 0 chrX 571347 571657 -162028273 + AluSx SINE Alu 1 310 -2 2011 131 37 67 chrX 572437 572759 -162027171 + THE1B LTR MaLR 1 313 -51 2059 124 0 3 chrX 572759 573078 -162026852 + AluSx SINE Alu 1 318 0 2011 131 37 67 chrX 573078 573128 -162026802 + THE1B LTR MaLR 313 363 -1 309 189 33 56 chrX 573165 573255 -162026675 - L1MB3 LINE L1 -5 6178 6091 354 295 108 39 chrX 573789 574176 -162025754 + LTR33 LTR ERVL 89 502 -19 1833 126 52 37 chrX 574284 574633 -162025297 - THE1B LTR MaLR -10 354 1 238 292 10 31 chrX 575419 575515 -162024415 - Charlie4 DNA MER1_type -1764 197 104 1886 164 0 3 chrX 575755 576041 -162023889 - AluSx SINE Alu -25 287 3 2416 87 0 13 chrX 576365 576677 -162023253 - AluSc SINE Alu -1 308 1 2155 94 0 11 chrX 576686 577013 -162022917 - AluSc SINE Alu 0 324 1 241 164 343 0 chrX 577218 577291 -162022639 + MER4A LTR ERV1 1 98 -566 1563 141 9 29 chrX 577291 577624 -162022306 + MER4A LTR ERV1 261 645 -19 645 201 113 2 chrX 577645 577864 -162022066 + L1MC3 LINE L1 7535 7993 -2 2218 125 6 3 chrX 577956 578267 -162021663 + AluSx SINE Alu 1 312 0 311 202 0 8 chrX 579001 579122 -162020808 + CT-rich Low_complexity Low_complexity 1 119 0 1688 183 0 14 chrX 579126 579410 -162020520 - AluJo SINE Alu -32 280 1 1974 157 27 76 chrX 579834 580130 -162019800 - MSTA LTR MaLR -4 424 156 2219 115 0 0 chrX 580130 580425 -162019505 + AluSq SINE Alu 1 295 -18 1974 157 27 76 chrX 580425 580574 -162019356 - MSTA LTR MaLR -272 156 1 2283 97 0 10 chrX 580619 580919 -162019011 - AluY SINE Alu -14 297 1 877 173 0 0 chrX 581251 581384 -162018546 + FLAM_C SINE Alu 1 133 0 365 39 0 19 chrX 581408 581460 -162018470 + (GGGA)n Simple_repeat Simple_repeat 4 54 0 309 248 31 23 chrX 581462 581591 -162018339 + (TTTG)n Simple_repeat Simple_repeat 3 132 0 231 215 69 0 chrX 581519 581663 -162018267 + (TG)n Simple_repeat Simple_repeat 2 155 0 * 1064 243 7 95 chrX 582230 582647 -162017283 - MLT1E2 LTR MaLR -136 490 137 2041 112 0 0 chrX 582647 582949 -162016981 + AluSx SINE Alu 14 315 0 1064 243 7 95 chrX 582949 583072 -162016858 - MLT1E2 LTR MaLR -489 137 5 2181 126 0 3 chrX 583746 584048 -162015882 + AluSx SINE Alu 1 301 -11 1017 154 0 0 chrX 585001 585150 -162014780 + AluJb SINE Alu 159 307 -5 249 57 0 0 chrX 585185 585220 -162014710 + (GA)n Simple_repeat Simple_repeat 2 36 0 324 0 0 0 chrX 585220 585256 -162014674 + (TG)n Simple_repeat Simple_repeat 2 37 0 1223 116 0 0 chrX 585552 585716 -162014214 + AluSg/x SINE Alu 135 298 -12 195 42 0 0 chrX 585825 585849 -162014081 + (CA)n Simple_repeat Simple_repeat 1 24 0 2177 104 10 3 chrX 585909 586208 -162013722 + AluSx SINE Alu 1 301 -11 2221 112 6 22 chrX 586386 586698 -162013232 + AluSq SINE Alu 1 307 -6 184 44 67 67 chrX 586705 586750 -162013180 + A-rich Low_complexity Low_complexity 2 46 0 3219 135 4 8 chrX 586952 587455 -162012475 - MER1A DNA MER1_type 0 529 29 1975 170 0 3 chrX 587712 588023 -162011907 - AluJo SINE Alu -2 310 1 584 66 0 0 chrX 588042 588118 -162011812 - Alu SINE Alu -5 305 230 1002 159 27 19 chrX 588119 588436 -162011494 + MLT2A2 LTR ERVL 229 447 -6 1198 207 30 30 chrX 588951 589250 -162010680 - MLT2D LTR ERVL 0 414 116 389 121 0 0 chrX 589251 589309 -162010621 + L1P4 LINE L1 5628 5685 -476 1887 109 0 12 chrX 589312 589559 -162010371 + AluSg SINE Alu 1 244 -66 1719 126 3 44 chrX 589623 589916 -162010014 - Tigger2a DNA MER2_type -153 281 1 307 194 97 32 chrX 589922 590015 -162009915 + L1MC4 LINE L1 6609 6707 -1335 1143 143 0 63 chrX 590546 590798 -162009132 + AluSq SINE Alu 60 295 -18 1586 129 40 66 chrX 590802 590939 -162008991 - THE1B LTR MaLR -69 295 156 2266 97 3 3 chrX 590939 591263 -162008667 + AluSq SINE Alu 2 313 0 1586 129 40 66 chrX 591263 591428 -162008502 - THE1B LTR MaLR -208 156 1 482 217 17 26 chrX 591430 591545 -162008385 + MLT1E2 LTR MaLR 495 608 -18 182 206 29 0 chrX 592037 592071 -162007859 + MIR SINE MIR 118 152 -56 2296 92 3 7 chrX 592088 592383 -162007547 - AluSp SINE Alu -17 296 3 32 0 0 0 chrX 592393 592425 -162007505 + AT_rich Low_complexity Low_complexity 1 32 0 694 181 9 0 chrX 592425 592541 -162007389 - FLAM_C SINE Alu -25 118 2 218 200 40 0 chrX 592665 592715 -162007215 + MIR SINE MIR 101 152 -56 1894 215 65 45 chrX 593202 593320 -162006610 - MER41D LTR ERV1 -11 546 432 2247 136 0 0 chrX 593320 593630 -162006300 + AluSx SINE Alu 2 311 -1 1894 215 65 45 chrX 593630 594046 -162005884 - MER41D LTR ERV1 -125 432 1 27 83 0 28 chrX 595808 595917 -162004013 + GC_rich Low_complexity Low_complexity 1 106 0 363 125 18 0 chrX 596163 596219 -162003711 - AluS SINE Alu -251 57 1 2168 104 11 0 chrX 596482 596769 -162003161 + AluSq SINE Alu 1 290 -23 261 0 0 0 chrX 597001 597030 -162002900 + (T)n Simple_repeat Simple_repeat 1 29 0 1909 127 9 72 chrX 597142 597284 -162002646 + AluJb SINE Alu 1 150 -162 2108 135 6 6 chrX 597284 597596 -162002334 + AluSx SINE Alu 1 312 0 1909 127 9 72 chrX 597596 597785 -162002145 + AluJb SINE Alu 150 311 -1 2251 91 0 10 chrX 597861 598159 -162001771 + AluSx SINE Alu 1 295 -17 741 161 8 16 chrX 598243 598367 -162001563 + AluJo SINE Alu 15 137 -175 1565 197 4 14 chrX 598369 598648 -162001282 + AluJo SINE Alu 5 280 -32 366 80 0 0 chrX 598650 598700 -162001230 + (TAA)n Simple_repeat Simple_repeat 1 50 0 230 75 0 25 chrX 598701 598741 -162001189 + MADE1 DNA Mariner 5 43 -37 2412 97 0 0 chrX 598939 599249 -162000681 - AluSg SINE Alu 0 310 1 1800 178 0 3 chrX 599358 599680 -162000250 - AluJo SINE Alu 0 321 1 1244 211 42 131 chrX 599694 600295 -161999635 - L1MD2 LINE L1 0 6359 5813 294 287 49 16 chrX 600345 600467 -161999463 - L1MD2 LINE L1 -2083 5725 5600 1783 161 3 20 chrX 600470 600775 -161999155 - AluJo SINE Alu -12 300 1 324 299 125 7 chrX 600902 601046 -161998884 - L1MD2 LINE L1 -2329 5479 5319 2492 54 0 14 chrX 601084 601380 -161998550 + AluY SINE Alu 1 292 -19 2750 96 13 0 chrX 601390 601767 -161998163 + L1PA8 LINE L1 5787 6168 -4 626 297 138 47 chrX 601767 602012 -161997918 - L1MC/D LINE L1 -770 5376 5155 1587 163 36 33 chrX 602012 602318 -161997612 - AluJo SINE Alu -5 307 1 626 297 138 47 chrX 602318 602890 -161997040 - L1MC/D LINE L1 -991 5155 4549 26 0 0 0 chrX 602932 602958 -161996972 + AT_rich Low_complexity Low_complexity 1 26 0 2295 82 0 10 chrX 602958 603251 -161996679 - AluSg SINE Alu -20 290 1 2167 161 21 0 chrX 603251 603629 -161996301 - L1PA16 LINE L1 -11 6155 5770 1000 139 6 6 chrX 603636 603801 -161996129 + L1PA16 LINE L1 5608 5772 -394 2660 55 0 0 chrX 603809 604118 -161995812 - AluY SINE Alu -2 309 1 1825 155 7 39 chrX 604121 604431 -161995499 - AluJb SINE Alu -12 300 1 363 272 43 27 chrX 604433 604617 -161995313 - LTR16B LTR ERVL -8 456 270 472 145 0 0 chrX 604887 604963 -161994967 - AluJ/FRAM SINE Alu -14 298 223 638 327 53 56 chrX 605064 605424 -161994506 - L1MC/D LINE L1 -1675 4471 4111 1685 157 3 28 chrX 605424 605710 -161994220 + AluJo SINE Alu 18 296 -16 638 327 53 56 chrX 605710 605817 -161994113 - L1MC/D LINE L1 -2035 4111 4005 219 170 0 0 chrX 605822 605869 -161994061 + (CA)n Simple_repeat Simple_repeat 2 48 0 341 96 0 82 chrX 606244 606317 -161993613 - MLT1A1 LTR MaLR -276 89 23 4032 52 4 4 chrX 606378 606878 -161993052 - L1PA7 LINE L1 -1 6153 5654 2171 197 5 2 chrX 606896 607312 -161992618 - L1PB4 LINE L1 -2 6154 5738 1040 177 8 6 chrX 608296 608571 -161991359 + GA-rich Low_complexity Low_complexity 1 457 -76 1040 128 6 0 chrX 608571 608750 -161991180 + (GGAA)n Simple_repeat Simple_repeat 1 180 0 1040 177 8 6 chrX 608750 608828 -161991102 + GA-rich Low_complexity Low_complexity 457 533 0 2414 221 55 2 chrX 608946 609475 -161990455 + MER74A LTR ERVL 1 557 -1 2021 150 0 13 chrX 609990 610303 -161989627 - AluSx SINE Alu -2 310 2 650 222 7 22 chrX 610544 610821 -161989109 - MLT1B LTR MaLR -2 465 170 1856 161 53 9 chrX 610825 611199 -161988731 - MLT1B LTR MaLR 0 396 1 823 192 7 7 chrX 611564 611710 -161988220 - FRAM SINE Alu -16 150 5 1142 139 6 0 chrX 611718 611891 -161988039 - AluSg/x SINE Alu 0 310 137 217 321 0 29 chrX 612946 613083 -161986847 + (TTAGG)n Simple_repeat Simple_repeat 3 135 0 206 264 0 35 chrX 613191 613278 -161986652 + (TTAAG)n Simple_repeat Simple_repeat 4 87 0 * 209 248 57 19 chrX 613218 613323 -161986607 + (AGTTG)n Simple_repeat Simple_repeat 1 109 0 276 314 0 31 chrX 613568 613727 -161986203 + (TTAGG)n Simple_repeat Simple_repeat 2 155 0 2825 176 16 69 chrX 613921 614274 -161985656 - L1MA8 LINE L1 -3 6288 5993 2442 104 0 0 chrX 614274 614583 -161985347 - AluSc SINE Alu 0 309 1 2825 176 16 69 chrX 614583 614971 -161984959 - L1MA8 LINE L1 -298 5993 5586 849 142 0 0 chrX 615114 615234 -161984696 + AluSq/x SINE Alu 1 120 -192 1098 133 0 0 chrX 615732 615920 -161984010 - AluSg/x SINE Alu 0 319 132 2132 114 0 41 chrX 615921 616236 -161983694 - AluSg SINE Alu -8 302 1 2055 116 3 7 chrX 617467 617783 -161982147 + AluSx SINE Alu 1 315 0 2018 96 0 3 chrX 617941 618223 -161981707 + L1PA7 LINE L1 5874 6154 0 1694 91 0 0 chrX 619124 619333 -161980597 + AluSg SINE Alu 1 209 -101 277 102 0 0 chrX 619335 619384 -161980546 + AluSg SINE Alu 252 300 0 21 0 0 0 chrX 619537 619558 -161980372 + AT_rich Low_complexity Low_complexity 1 21 0 3306 190 9 31 chrX 619558 619796 -161980134 - L1PB4 LINE L1 -1 6155 5913 2352 203 54 30 chrX 619796 620293 -161979637 + LTR22 LTR ERVK 1 509 0 3306 190 9 31 chrX 620293 620733 -161979197 - L1PB4 LINE L1 -243 5913 5492 2155 101 24 0 chrX 620763 621051 -161978879 + AluSq SINE Alu 7 301 -12 2177 105 0 10 chrX 621061 621355 -161978575 + AluSx SINE Alu 7 297 -15 2400 95 0 0 chrX 621931 622227 -161977703 + AluSg SINE Alu 1 296 -14 389 291 10 10 chrX 622227 622330 -161977600 - MLT1E LTR MaLR -489 104 2 2051 133 3 3 chrX 622569 622869 -161977061 - AluSx SINE Alu -12 300 1 467 315 12 6 chrX 624271 624436 -161975494 - MLT1G1 LTR MaLR -207 388 223 2361 104 3 0 chrX 624584 624892 -161975038 - AluSp SINE Alu 0 313 5 2526 133 23 14 chrX 624903 625333 -161974597 + MER57B LTR ERV1 1 434 0 491 316 63 36 chrX 625359 625383 -161974547 + L1ME LINE L1 1325 1347 -5256 2307 119 3 0 chrX 625383 625695 -161974235 + AluSp SINE Alu 1 313 0 491 316 63 36 chrX 625695 625977 -161973953 + L1ME LINE L1 1347 1617 -4986 5595 54 1 0 chrX 626323 627007 -161972923 - L1PA7 LINE L1 -1 6153 5469 1007 225 76 31 chrX 627852 628174 -161971756 + MLT1A1 LTR MaLR 23 410 -18 339 156 0 16 chrX 628213 628277 -161971653 + MLT1A1 LTR MaLR 294 356 -9 443 252 25 69 chrX 628280 628439 -161971491 - MLT1G1 LTR MaLR -314 153 2 2075 137 0 0 chrX 628467 628766 -161971164 + AluSx SINE Alu 1 299 -13 236 308 0 0 chrX 628766 628831 -161971099 - L2 LINE L2 -18 3295 3231 204 267 0 0 chrX 628866 628926 -161971004 + (TG)n Simple_repeat Simple_repeat 1 60 0 1991 141 0 33 chrX 628975 629274 -161970656 - AluJo SINE Alu -23 289 1 2282 108 3 0 chrX 629345 629641 -161970289 - AluSx SINE Alu -15 297 1 2346 103 0 10 chrX 629978 630280 -161969650 - AluSg SINE Alu -11 299 1 1844 162 8 22 chrX 630421 630764 -161969166 - L1PA16 LINE L1 0 6166 5827 2160 131 3 3 chrX 630764 631070 -161968860 - AluSc SINE Alu -3 306 1 1844 162 8 22 chrX 631070 631084 -161968846 - L1PA16 LINE L1 -339 5827 5814 1023 110 35 0 chrX 631084 631229 -161968701 - AluSp SINE Alu -30 283 134 1276 146 26 18 chrX 631229 631455 -161968475 - AluSg/x SINE Alu 0 312 85 591 104 0 0 chrX 631455 631532 -161968398 - AluSg/x SINE Alu -62 250 174 1203 83 0 0 chrX 631655 631800 -161968130 - AluSg SINE Alu -165 145 1 230 67 0 0 chrX 631815 631845 -161968085 - L1M LINE L1 -771 5397 5368 23 0 0 0 chrX 631889 631912 -161968018 + AT_rich Low_complexity Low_complexity 1 23 0 1740 178 30 0 chrX 631990 632288 -161967642 - AluJb SINE Alu -5 307 1 2253 88 0 3 chrX 632320 632605 -161967325 - AluSg SINE Alu -26 284 1 2539 185 15 2 chrX 632928 633409 -161966521 - LTR15 LTR ERV1 -6 487 1 432 333 46 35 chrX 633492 633666 -161966264 + MER5A DNA MER1_type 1 176 -13 2345 100 3 3 chrX 633937 634238 -161965692 - AluSq SINE Alu -12 301 1 1705 118 30 43 chrX 634480 634631 -161965299 + L1MA3 LINE L1 5988 6135 -170 2313 103 17 0 chrX 634631 634932 -161964998 + AluSx SINE Alu 2 307 -5 1705 118 30 43 chrX 634932 635084 -161964846 + L1MA3 LINE L1 6135 6287 -18 23 0 0 0 chrX 636050 636073 -161963857 + AT_rich Low_complexity Low_complexity 1 23 0 1330 164 9 0 chrX 636119 636332 -161963598 - AluJo SINE Alu -94 218 4 1232 203 114 7 chrX 636339 636610 -161963320 - AluJo SINE Alu -2 300 1 548 282 96 47 chrX 636619 637005 -161962925 - Charlie1b DNA MER1_type -115 408 4 467 193 47 94 chrX 638673 638688 -161961242 - Charlie1 DNA MER1_type 0 2761 2747 2172 104 10 0 chrX 638688 638985 -161960945 - AluSp SINE Alu -13 300 1 467 193 47 94 chrX 638985 639182 -161960748 - Charlie1 DNA MER1_type -14 2747 2559 62 52 0 0 chrX 639186 639283 -161960647 + AT_rich Low_complexity Low_complexity 1 97 0 837 137 75 176 chrX 639304 639457 -161960473 - L1MA7 LINE L1 -3 6288 6121 868 100 0 0 chrX 639457 639577 -161960353 - L1PB1 LINE L1 -1 6150 6031 837 137 75 176 chrX 639577 639600 -161960330 - L1MA7 LINE L1 -170 6121 6097 2218 125 3 3 chrX 639600 639912 -161960018 + AluSx SINE Alu 1 312 0 837 137 75 176 chrX 639912 640040 -161959890 - L1MA7 LINE L1 -194 6097 6014 485 275 23 41 chrX 640048 640266 -161959664 - Charlie1 DNA MER1_type -197 2564 2351 198 71 0 0 chrX 640718 640746 -161959184 + (TAA)n Simple_repeat Simple_repeat 2 29 0 231 146 0 0 chrX 640789 640830 -161959100 + (TAA)n Simple_repeat Simple_repeat 2 42 0 198 71 0 0 chrX 640872 640900 -161959030 + (TAA)n Simple_repeat Simple_repeat 2 29 0 279 79 0 0 chrX 640945 640983 -161958947 + (TAA)n Simple_repeat Simple_repeat 1 38 0 216 97 0 0 chrX 641026 641057 -161958873 + (TAA)n Simple_repeat Simple_repeat 2 32 0 215 158 0 0 chrX 641102 641140 -161958790 + (TAA)n Simple_repeat Simple_repeat 1 38 0 21 36 0 0 chrX 641366 641394 -161958536 + AT_rich Low_complexity Low_complexity 1 28 0 2233 110 3 10 chrX 641654 641962 -161957968 - AluSq SINE Alu -5 308 3 203 184 0 0 chrX 642009 642047 -161957883 + (TAA)n Simple_repeat Simple_repeat 1 38 0 201 39 0 0 chrX 642092 642118 -161957812 + (TAA)n Simple_repeat Simple_repeat 3 28 0 285 29 0 0 chrX 642163 642197 -161957733 + (TAA)n Simple_repeat Simple_repeat 3 36 0 1036 247 136 19 chrX 642767 643200 -161956730 - MLT1D LTR MaLR -19 486 3 612 231 87 63 chrX 643212 643498 -161956432 - MLT1C LTR MaLR -122 345 53 2491 86 0 0 chrX 644282 644585 -161955345 + AluSx SINE Alu 1 303 -9 2080 97 31 3 chrX 647177 647466 -161952464 + AluSx SINE Alu 1 297 -15 1701 107 4 27 chrX 648022 648283 -161951647 + AluSx SINE Alu 42 296 -16 21 0 0 0 chrX 649306 649327 -161950603 + AT_rich Low_complexity Low_complexity 1 21 0 300 283 0 35 chrX 649587 649700 -161950230 + CT-rich Low_complexity Low_complexity 3 111 0 729 115 0 68 chrX 649710 649902 -161950028 + (TTCC)n Simple_repeat Simple_repeat 1 179 0 865 141 0 22 chrX 649939 650123 -161949807 + (TCCC)n Simple_repeat Simple_repeat 1 180 0 27 0 0 0 chrX 650444 650471 -161949459 + AT_rich Low_complexity Low_complexity 1 27 0 303 267 0 30 chrX 650488 650589 -161949341 + G-rich Low_complexity Low_complexity 2 99 0 423 185 8 25 chrX 650597 650716 -161949214 + CT-rich Low_complexity Low_complexity 2 118 0 379 235 10 20 chrX 651814 651912 -161948018 - MER58B DNA MER1_type -20 321 225 2145 94 11 0 chrX 651913 652189 -161947741 + AluSq SINE Alu 2 280 -33 230 191 24 71 chrX 652215 652299 -161947631 - MER58B DNA MER1_type -183 158 79 180 0 0 0 chrX 652375 652395 -161947535 + (T)n Simple_repeat Simple_repeat 1 20 0 1755 151 0 31 chrX 652614 652933 -161946997 + AluJo SINE Alu 1 310 0 911 207 0 0 chrX 652933 653097 -161946833 + AluJb SINE Alu 135 298 -14 1490 176 22 38 chrX 653620 653756 -161946174 + AluJo SINE Alu 1 138 -174 1749 184 3 7 chrX 653756 654055 -161945875 + AluJo SINE Alu 1 298 -14 1490 176 22 38 chrX 654055 654231 -161945699 + AluJo SINE Alu 138 308 -4 2238 106 7 0 chrX 654508 654801 -161945129 - AluSq SINE Alu -18 295 1 419 206 0 20 chrX 654981 655083 -161944847 - L1MA7 LINE L1 -8 6283 6184 2081 207 43 62 chrX 655193 655357 -161944573 - L1MA8 LINE L1 -107 6184 6018 1715 175 14 7 chrX 655357 655649 -161944281 - AluJo SINE Alu -18 294 1 744 196 0 0 chrX 655652 655785 -161944145 - AluJo/FLAM SINE Alu -169 133 1 2081 207 43 62 chrX 655785 656192 -161943738 - L1MA8 LINE L1 -275 6016 5620 2124 119 3 26 chrX 658309 658620 -161941310 - AluSx SINE Alu -8 304 1 5148 24 0 0 chrX 659378 659962 -161939968 - L1PA4 LINE L1 -7 6148 5565 1127 206 58 21 chrX 659962 660253 -161939677 - MLT1A1 LTR MaLR -54 311 10 209 301 23 40 chrX 661714 661890 -161938040 + (CAGGT)n Simple_repeat Simple_repeat 4 176 0 33 0 0 0 chrX 662470 662503 -161937427 + AT_rich Low_complexity Low_complexity 1 33 0 551 260 83 0 chrX 662703 662884 -161937046 - MER58A DNA MER1_type -2 222 27 285 324 0 32 chrX 663597 663782 -161936148 + (TTAGG)n Simple_repeat Simple_repeat 2 180 0 1646 201 25 88 chrX 664038 664132 -161935798 - L1MA8 LINE L1 -184 6107 6009 1573 192 7 0 chrX 664132 664413 -161935517 - AluJo SINE Alu -19 293 11 1646 201 25 88 chrX 664413 664433 -161935497 - L1MA8 LINE L1 -282 6009 5989 698 204 0 0 chrX 664433 664565 -161935365 - FLAM_C SINE Alu -1 132 1 1646 201 25 88 chrX 664565 664970 -161934960 - L1MA8 LINE L1 -302 5989 5620 2280 107 0 0 chrX 666649 666949 -161932981 - AluSx SINE Alu -12 300 1 2026 138 23 0 chrX 667510 667815 -161932115 - AluSq SINE Alu -1 312 1 2218 151 10 29 chrX 667818 668155 -161931775 - L1PA15 LINE L1 -6 6159 5830 2200 115 3 0 chrX 668155 668450 -161931480 - AluSp SINE Alu -17 296 1 2218 151 10 29 chrX 668450 668522 -161931408 - L1PA15 LINE L1 -335 5830 5758 2295 101 0 0 chrX 668740 669036 -161930894 - AluSq SINE Alu -17 296 1 529 168 0 0 chrX 669220 669327 -161930603 - L1MA7 LINE L1 -1 6290 6184 1381 194 97 119 chrX 669398 669608 -161930322 - L1MA7 LINE L1 -88 6203 5990 1588 190 14 0 chrX 669608 669892 -161930038 - AluJo SINE Alu -24 288 1 739 203 0 0 chrX 669897 670030 -161929900 - FLAM_C SINE Alu 0 133 1 1381 194 97 119 chrX 670030 670410 -161929520 - L1MA7 LINE L1 -305 5986 5620 988 106 0 0 chrX 672032 672164 -161927766 - AluSg/x SINE Alu -11 299 168 1551 202 57 9 chrX 672165 672496 -161927434 - MLT1A1 LTR MaLR -15 350 4 21 36 0 0 chrX 672540 672568 -161927362 + AT_rich Low_complexity Low_complexity 1 28 0 1012 118 0 0 chrX 672809 672945 -161926985 - AluSp/q SINE Alu -18 295 160 198 0 0 0 chrX 673111 673133 -161926797 + (TTTA)n Simple_repeat Simple_repeat 3 24 0 1302 174 126 7 chrX 673351 673621 -161926309 + AluJo SINE Alu 1 302 -10 841 167 0 32 chrX 673621 673777 -161926153 + AluJo/FRAM SINE Alu 134 284 -28 2478 81 0 0 chrX 674079 674377 -161925553 - AluSq SINE Alu -15 298 1 402 192 29 19 chrX 674563 674667 -161925263 - L1MA7 LINE L1 -3 6288 6184 547 187 92 19 chrX 674742 674921 -161925009 - L1MA7 LINE L1 -91 6209 6032 1685 181 24 0 chrX 674940 675228 -161924702 - AluJo SINE Alu -17 295 1 703 221 0 0 chrX 675230 675370 -161924560 - FLAM_C SINE Alu -2 141 2 1754 218 50 0 chrX 675371 675774 -161924156 - L1MA8 LINE L1 -249 6042 5620 236 177 0 48 chrX 677741 677803 -161922127 - MLT1A1 LTR MaLR -306 59 1 2365 92 0 0 chrX 678114 678409 -161921521 - AluSq SINE Alu -18 295 1 1604 174 3 34 chrX 678413 678735 -161921195 - AluJo SINE Alu 0 312 1 2621 50 3 0 chrX 679256 679559 -161920371 - AluY SINE Alu -7 304 1 1900 126 4 0 chrX 680062 680325 -161919605 - AluSx SINE Alu -48 264 1 192 40 0 0 chrX 680859 680884 -161919046 + (TTTG)n Simple_repeat Simple_repeat 2 26 0 1994 125 11 4 chrX 680886 681167 -161918763 - AluSp SINE Alu -30 283 1 403 157 0 0 chrX 681168 681238 -161918692 - L1PA13 LINE L1 -335 5828 5759 1988 146 0 31 chrX 681462 681783 -161918147 - AluSq SINE Alu -2 311 1 2162 113 3 26 chrX 684236 684546 -161915384 - AluSx SINE Alu -8 304 2 1777 172 27 0 chrX 685098 685395 -161914535 - AluSq SINE Alu -8 305 1 2193 158 20 27 chrX 685398 685729 -161914201 - L1PA15 LINE L1 -7 6158 5829 2129 125 10 0 chrX 685729 686025 -161913905 - AluSp SINE Alu -14 299 1 2193 158 20 27 chrX 686025 686097 -161913833 - L1PA15 LINE L1 -336 5829 5758 2041 118 24 0 chrX 686311 686600 -161913330 - AluSq SINE Alu -17 296 1 436 187 7 72 chrX 686784 686923 -161913007 - L1MA7 LINE L1 -1 6290 6161 1818 200 43 86 chrX 686962 687179 -161912751 - L1MA9 LINE L1 -97 6215 5990 1665 171 15 0 chrX 687179 687453 -161912477 - AluJo SINE Alu -24 288 11 1818 200 43 86 chrX 687453 687476 -161912454 - L1MA9 LINE L1 -322 5990 5968 677 207 0 15 chrX 687476 687611 -161912319 - FLAM_C SINE Alu 0 133 1 1818 200 43 86 chrX 687611 688010 -161911920 - L1MA9 LINE L1 -344 5968 5620 2069 108 49 7 chrX 689908 690196 -161909734 - AluSx SINE Alu -12 300 1 1878 150 24 0 chrX 690806 691099 -161908831 - AluSq SINE Alu -13 300 1 2103 151 40 33 chrX 691102 691427 -161908503 - L1PA15 LINE L1 -7 6158 5828 2085 141 3 0 chrX 691427 691732 -161908198 - AluSp SINE Alu -7 306 1 2103 151 40 33 chrX 691732 691804 -161908126 - L1PA15 LINE L1 -337 5828 5758 1943 148 3 22 chrX 692050 692368 -161907562 - AluSq SINE Alu -1 312 1 875 115 0 8 chrX 694557 694687 -161905243 - AluSg/x SINE Alu -14 296 168 1589 217 23 9 chrX 694688 695033 -161904897 - MLT1A1 LTR MaLR -15 350 1 1108 88 0 0 chrX 695340 695477 -161904453 - AluSp/q SINE Alu -17 296 160 229 180 22 67 chrX 695477 695566 -161904364 - MER58 DNA MER1_type -183 158 74 207 167 0 0 chrX 695662 695704 -161904226 + T-rich Low_complexity Low_complexity 1 42 0 1511 146 89 14 chrX 695899 696180 -161903750 + AluJo SINE Alu 1 302 -10 808 220 0 24 chrX 696180 696348 -161903582 + AluJb SINE Alu 134 297 -15 1561 168 16 38 chrX 696868 697006 -161902924 + AluJo SINE Alu 1 141 -171 1763 183 3 7 chrX 697006 697306 -161902624 + AluJb SINE Alu 1 299 -13 1561 168 16 38 chrX 697306 697482 -161902448 + AluJo SINE Alu 141 308 -4 2192 99 0 0 chrX 697758 698064 -161901866 - AluSq SINE Alu 0 306 1 332 94 19 0 chrX 698286 698339 -161901591 + (TA)n Simple_repeat Simple_repeat 1 54 0 364 182 0 0 chrX 698375 698441 -161901489 - L1MA7 LINE L1 -42 6249 6184 1836 201 39 79 chrX 698572 698741 -161901189 - L1MA8 LINE L1 -100 6191 6017 1573 192 7 0 chrX 698741 699022 -161900908 - AluJo SINE Alu -19 293 11 1836 201 39 79 chrX 699022 699042 -161900888 - L1MA8 LINE L1 -274 6017 5998 698 204 0 0 chrX 699042 699174 -161900756 - FLAM_C SINE Alu -1 132 1 1836 201 39 79 chrX 699174 699579 -161900351 - L1MA8 LINE L1 -293 5998 5620 988 106 0 0 chrX 700452 700584 -161899346 - AluSg/x SINE Alu -11 301 170 1551 202 57 9 chrX 700585 700916 -161899014 - MLT1A1 LTR MaLR -15 350 4 21 36 0 0 chrX 700960 700988 -161898942 + AT_rich Low_complexity Low_complexity 1 28 0 1012 118 0 0 chrX 701229 701365 -161898565 - AluSp/q SINE Alu -18 295 160 198 0 0 0 chrX 701531 701553 -161898377 + (TTTA)n Simple_repeat Simple_repeat 3 24 0 1302 174 126 7 chrX 701771 702041 -161897889 + AluJo SINE Alu 1 302 -10 841 167 0 32 chrX 702041 702197 -161897733 + AluJo/FRAM SINE Alu 134 284 -28 2478 81 0 0 chrX 702498 702796 -161897134 - AluSq SINE Alu -15 298 1 402 192 29 19 chrX 702982 703086 -161896844 - L1MA7 LINE L1 -3 6288 6184 1918 193 52 64 chrX 703195 703359 -161896571 - L1MA8 LINE L1 -100 6191 6027 1685 181 24 0 chrX 703359 703647 -161896283 - AluJo SINE Alu -17 295 1 684 226 0 0 chrX 703657 703790 -161896140 - FLAM_C SINE Alu 0 133 1 1918 193 52 64 chrX 703790 704193 -161895737 - L1MA8 LINE L1 -273 6018 5620 941 55 0 0 chrX 704631 704740 -161895190 - AluSq/x SINE Alu -203 109 1 1311 178 12 42 chrX 704742 705001 -161894929 + MLT1A1 LTR MaLR 31 318 -78 1694 95 5 0 chrX 705001 705223 -161894707 + AluSp SINE Alu 87 309 -4 207 0 0 0 chrX 705372 705395 -161894535 + (A)n Simple_repeat Simple_repeat 1 23 0 258 237 0 0 chrX 706005 706081 -161893849 + (CAT)n Simple_repeat Simple_repeat 2 77 0 1678 181 7 17 chrX 706898 707196 -161892734 + AluJb SINE Alu 1 295 -17 1041 76 0 7 chrX 707376 707520 -161892410 - L1PA8 LINE L1 -341 5831 5689 1665 196 20 38 chrX 707531 707929 -161892001 - L1MB1 LINE L1 -1 6167 5777 2164 109 0 16 chrX 707929 708232 -161891698 - AluSx SINE Alu -14 298 1 2382 64 24 3 chrX 708239 708536 -161891394 - AluY SINE Alu -8 303 1 2071 110 23 17 chrX 708589 708889 -161891041 - AluSx SINE Alu -10 302 1 233 139 23 0 chrX 708895 708938 -161890992 - L1M2 LINE L1 -467 5824 5781 1849 129 0 0 chrX 709038 709293 -161890637 - AluSx SINE Alu -54 258 4 1703 118 22 4 chrX 709304 709576 -161890354 + L1PB1 LINE L1 5867 6143 -8 1189 144 0 42 chrX 709616 709831 -161890099 - Tigger2a DNA MER2_type -228 206 1 977 248 44 50 chrX 709832 710175 -161889755 - MLT1A2 LTR MaLR -33 341 1 1549 109 0 0 chrX 710967 711168 -161888762 + AluSq SINE Alu 1 201 -112 947 55 87 0 chrX 711288 711415 -161888515 - MER85 DNA T2_type 0 139 2 566 233 10 79 chrX 711430 711553 -161888377 - MER4C LTR ERV1 -2 463 333 2418 81 0 0 chrX 711553 711851 -161888079 - AluSx SINE Alu -14 298 1 2211 111 3 3 chrX 711851 712156 -161887774 - AluSx SINE Alu -6 306 1 566 233 10 79 chrX 712156 712233 -161887697 - MER4C LTR ERV1 -130 335 276 897 148 7 187 chrX 712241 712600 -161887330 - MER4A LTR ERV1 -177 522 139 1658 129 53 76 chrX 712667 712969 -161886961 + AluJb SINE Alu 1 295 -17 3307 129 8 2 chrX 713008 713526 -161886404 + MER41B LTR ERV1 113 633 -2 1694 127 8 0 chrX 713654 713891 -161886039 + AluSq SINE Alu 62 300 -13 2069 131 3 0 chrX 713901 714198 -161885732 + AluSx SINE Alu 1 298 -14 1861 162 17 67 chrX 714387 714769 -161885161 + Tigger2a DNA MER2_type 2 365 -2343 2238 127 0 0 chrX 714769 715068 -161884862 + AluSq SINE Alu 1 299 -14 1861 162 17 67 chrX 715068 715087 -161884843 + Tigger2a DNA MER2_type 365 383 -51 697 189 6 6 chrX 715192 715372 -161884558 + (CAT)n Simple_repeat Simple_repeat 1 180 0 806 192 6 0 chrX 715389 715717 -161884213 + (CAT)n Simple_repeat Simple_repeat 1 330 0 231 354 98 32 chrX 716137 716422 -161883508 - L2 LINE L2 -616 2698 2395 1346 66 11 0 chrX 716852 717035 -161882895 + L1PA2 LINE L1 5932 6116 -39 2175 158 71 76 chrX 718003 718231 -161881699 + LTR39 LTR ERV1 1 229 -554 2857 56 26 3 chrX 718231 718608 -161881322 + L1PA7 LINE L1 5767 6152 -2 2175 158 71 76 chrX 718608 718891 -161881039 + LTR39 LTR ERV1 229 511 -272 2278 99 0 17 chrX 718891 719193 -161880737 - AluSq SINE Alu -16 297 1 2175 158 71 76 chrX 719193 719243 -161880687 + LTR39 LTR ERV1 511 560 -223 741 121 17 0 chrX 719343 719459 -161880471 + MLT2A1 LTR ERVL 327 444 0 492 284 138 53 chrX 719644 719926 -161880004 + L1M4 LINE L1 2922 3227 -2919 2232 103 4 0 chrX 720248 720529 -161879401 + AluSx SINE Alu 1 282 -30 200 91 0 30 chrX 720529 720562 -161879368 + (TC)n Simple_repeat Simple_repeat 1 32 0 324 0 0 0 chrX 720569 720605 -161879325 + (TAAA)n Simple_repeat Simple_repeat 2 37 0 677 273 19 19 chrX 720657 720866 -161879064 + MER58A DNA MER1_type 1 209 -15 244 321 176 0 chrX 721223 721388 -161878542 + MER117 DNA MER1_type 4 197 0 240 111 0 0 chrX 721539 721575 -161878355 + (ATG)n Simple_repeat Simple_repeat 1 36 0 372 94 0 0 chrX 721604 721657 -161878273 + (CA)n Simple_repeat Simple_repeat 2 54 0 933 91 0 8 chrX 721663 721784 -161878146 - AluSc SINE Alu -27 282 163 1068 96 0 0 chrX 721884 722019 -161877911 - AluSq SINE Alu -54 259 125 188 365 0 21 chrX 722069 722165 -161877765 - MIR SINE MIR -140 122 29 1473 224 0 20 chrX 722407 722702 -161877228 + AluJo SINE Alu 1 289 -23 264 77 0 0 chrX 722790 722829 -161877101 + LTR9 LTR ERV1 1 39 -573 1096 170 0 6 chrX 722829 723000 -161876930 + AluJb SINE Alu 129 298 -14 526 31 0 0 chrX 723618 723683 -161876247 + LTR9 LTR ERV1 1 65 -547 1507 95 22 56 chrX 723683 723915 -161876015 - AluSg/x SINE Alu -1 309 86 704 207 0 0 chrX 724844 724960 -161874970 - FLAM_A SINE Alu -17 116 1 778 129 57 0 chrX 725056 725180 -161874750 + AluJo SINE Alu 14 144 -168 2405 106 0 0 chrX 725183 725495 -161874435 + AluSp SINE Alu 1 312 -1 1708 167 14 3 chrX 725529 725822 -161874108 + AluJo SINE Alu 14 309 -3 399 41 0 0 chrX 726326 726375 -161873555 + (TTGG)n Simple_repeat Simple_repeat 2 50 0 2131 122 0 22 chrX 726934 727253 -161872677 - AluSx SINE Alu 0 312 1 1044 101 14 0 chrX 727253 727392 -161872538 - AluSq/x SINE Alu -172 141 1 2381 69 3 0 chrX 727630 727920 -161872010 - AluSx SINE Alu -21 291 1 695 295 74 44 chrX 727969 728308 -161871622 + MER92B LTR ERV1 27 375 -261 1877 168 0 43 chrX 728797 729004 -161870926 + L1PA15 LINE L1 5831 6019 -146 2187 100 0 0 chrX 729004 729284 -161870646 + AluSg SINE Alu 1 280 -30 1877 168 0 43 chrX 729284 729421 -161870509 + L1PA15 LINE L1 6019 6160 -5 385 117 48 58 chrX 729422 729525 -161870405 + Tigger3(Golem) DNA MER2_type 2425 2526 -503 1699 169 3 0 chrX 730664 730966 -161868964 - Tigger1 DNA MER2_type -165 2253 1951 2508 89 0 6 chrX 730967 731282 -161868648 + AluSq SINE Alu 1 313 0 714 213 0 0 chrX 731291 731432 -161868498 + Tigger1 DNA MER2_type 1538 1678 -740 329 115 19 0 chrX 731533 731585 -161868345 - Alu SINE Alu -249 53 1 376 217 12 0 chrX 731602 731770 -161868160 + CT-rich Low_complexity Low_complexity 1 170 0 22 0 0 0 chrX 732747 732769 -161867161 + AT_rich Low_complexity Low_complexity 1 22 0 1344 138 4 9 chrX 733030 733255 -161866675 - MLT1B LTR MaLR 0 390 167 1004 165 10 16 chrX 733261 733455 -161866475 - MLT1B LTR MaLR 0 390 198 274 317 0 0 chrX 733883 733987 -161865943 + C-rich Low_complexity Low_complexity 4 107 0 228 303 11 0 chrX 734186 734275 -161865655 + Charlie5 DNA MER1_type 29 118 -2494 2237 94 13 3 chrX 734829 735127 -161864803 - AluSp SINE Alu 0 313 13 920 98 0 0 chrX 735720 735842 -161864088 - AluY SINE Alu -12 299 178 2019 158 27 21 chrX 735958 736332 -161863598 - MER1A DNA MER1_type -61 468 93 2523 61 0 3 chrX 736523 736818 -161863112 - AluSc SINE Alu -15 294 1 337 295 0 9 chrX 737006 737111 -161862819 + MLT1C LTR MaLR 360 463 -4 1177 178 73 8 chrX 737132 737379 -161862551 + Tigger2a DNA MER2_type 1 263 -171 311 65 0 0 chrX 737389 737435 -161862495 + Tigger2a DNA MER2_type 232 277 -167 2264 119 0 3 chrX 737440 737752 -161862178 - AluSp SINE Alu -2 311 1 493 49 0 0 chrX 737812 737873 -161862057 + MER1A DNA MER1_type 261 321 -208 443 212 169 0 chrX 737853 737971 -161861959 + Tigger2a DNA MER2_type 292 429 -5 * 842 98 0 0 chrX 738089 738201 -161861729 - AluSq/x SINE Alu -200 112 1 2403 99 0 0 chrX 738505 738808 -161861122 - AluSx SINE Alu -9 303 1 2366 101 7 0 chrX 739303 739611 -161860319 - AluSg SINE Alu 0 310 1 1639 186 7 14 chrX 739879 740175 -161859755 + AluJo SINE Alu 11 304 -8 226 304 25 0 chrX 740353 740432 -161859498 - MLT1B LTR MaLR -286 181 101 183 204 0 0 chrX 740769 740813 -161859117 + (CA)n Simple_repeat Simple_repeat 2 45 0 1178 78 0 20 chrX 741129 741282 -161858648 + AluSg SINE Alu 1 150 -160 685 259 70 5 chrX 741285 741470 -161858460 - MIR SINE MIR -18 244 48 1044 83 0 0 chrX 741547 741680 -161858250 + AluY SINE Alu 167 299 -12 4970 108 13 18 chrX 741680 742109 -161857821 + L1PA13 LINE L1 5359 5784 -379 1876 99 48 61 chrX 742109 742421 -161857509 + AluSg SINE Alu 1 308 -2 4970 108 13 18 chrX 742421 742781 -161857149 + L1PA13 LINE L1 5784 6144 -19 1049 170 39 5 chrX 743024 743230 -161856700 - L1M2 LINE L1 -506 5785 5573 2163 112 30 0 chrX 743318 743622 -161856308 + AluSq SINE Alu 1 313 0 2018 118 59 42 chrX 744577 744607 -161855323 + THE1B LTR MaLR 3 31 -333 2029 133 17 0 chrX 744607 744900 -161855030 - AluSq SINE Alu -15 298 1 2018 118 59 42 chrX 744900 745224 -161854706 + THE1B LTR MaLR 31 363 -1 3051 62 10 20 chrX 745265 745666 -161854264 + L1PA7 LINE L1 5758 6154 0 1340 212 0 35 chrX 746323 746639 -161853291 - MLT2D LTR ERVL 0 414 110 932 147 0 51 chrX 746639 746795 -161853135 - AluSp/q SINE Alu -12 301 154 443 208 31 6 chrX 746942 747101 -161852829 + GA-rich Low_complexity Low_complexity 1 163 0 1615 174 16 45 chrX 747825 748136 -161851794 + AluJo SINE Alu 1 302 -10 333 196 78 0 chrX 748614 748767 -161851163 + (TA)n Simple_repeat Simple_repeat 1 165 0 40 79 0 0 chrX 748794 748883 -161851047 + AT_rich Low_complexity Low_complexity 1 89 0 354 145 90 18 chrX 748934 749100 -161850830 + (TA)n Simple_repeat Simple_repeat 1 178 0 724 158 16 16 chrX 749115 749242 -161850688 - FLAM_A SINE Alu -6 136 10 2176 112 0 3 chrX 749663 749950 -161849980 - AluSx SINE Alu -8 304 19 1186 195 24 30 chrX 750396 750694 -161849236 + L1MB3 LINE L1 5596 5891 -292 2293 178 11 15 chrX 750694 751155 -161848775 + L1MB3 LINE L1 5723 6181 -2 2168 102 27 0 chrX 751174 751467 -161848463 + AluSp SINE Alu 1 301 -12 305 69 0 52 chrX 751467 751516 -161848414 + L1MB3 LINE L1 6134 6181 -2 2139 127 0 0 chrX 751531 751838 -161848092 + AluSx SINE Alu 1 307 -5 1795 162 30 20 chrX 752768 753071 -161846859 - AluJo SINE Alu -6 306 1 2286 112 0 6 chrX 753090 753403 -161846527 - AluY SINE Alu 0 311 1 2094 68 0 8 chrX 753718 753983 -161845947 + AluY SINE Alu 45 307 -4 1377 98 0 0 chrX 753983 754157 -161845773 + AluSg/x SINE Alu 124 297 -13 505 156 0 33 chrX 754354 754444 -161845486 - AluS SINE Alu -226 87 1 216 0 0 0 chrX 754873 754897 -161845033 + (TG)n Simple_repeat Simple_repeat 1 24 0 832 200 0 0 chrX 755394 755549 -161844381 + AluJo SINE Alu 1 155 -157 1685 166 7 7 chrX 755550 755840 -161844090 + AluJo SINE Alu 23 312 0 1068 109 0 0 chrX 755924 756062 -161843868 + AluSp/q SINE Alu 162 299 -14 2090 101 0 0 chrX 756186 756462 -161843468 + AluSx SINE Alu 37 312 0 1301 235 68 29 chrX 756486 756928 -161843002 + MLT1C LTR MaLR 7 465 -2 2324 91 0 3 chrX 757945 758242 -161841688 - AluSc SINE Alu -13 296 1 301 263 30 0 chrX 759507 759606 -161840324 - MLT2D LTR ERVL -310 104 3 29 70 0 0 chrX 759803 759860 -161840070 + AT_rich Low_complexity Low_complexity 1 57 0 297 0 0 0 chrX 759863 759896 -161840034 + (TA)n Simple_repeat Simple_repeat 1 33 0 3098 61 8 5 chrX 759898 760523 -161839407 - L1PA7 LINE L1 -2 6152 5392 3614 161 4 85 chrX 760638 761416 -161838514 - LTR62 LTR ERVK -4 715 1 1280 201 60 2 chrX 761421 761830 -161838100 - LTR19A LTR ERV1 0 486 1 2197 129 0 3 chrX 762664 762974 -161836956 + AluSq SINE Alu 1 309 -4 982 250 79 27 chrX 763159 763542 -161836388 + MLT1C LTR MaLR 45 454 -13 492 169 0 11 chrX 764328 764339 -161835591 + L1PB1 LINE L1 5782 5792 -359 219 88 0 0 chrX 764339 764373 -161835557 + (CA)n Simple_repeat Simple_repeat 2 35 0 492 169 0 11 chrX 764373 764450 -161835480 + L1PB1 LINE L1 5792 5869 -282 2390 66 0 3 chrX 764451 764753 -161835177 - L1PA7 LINE L1 -3 6151 5851 3321 172 33 33 chrX 764753 765365 -161834565 + L1PB2 LINE L1 5460 6095 -56 2202 120 0 10 chrX 765365 765665 -161834265 + AluSx SINE Alu 4 300 -12 3321 172 33 33 chrX 765665 765723 -161834207 + L1PB2 LINE L1 6094 6151 0 1929 212 22 7 chrX 765953 766359 -161833571 - MSTB1 LTR MaLR 0 432 21 2372 114 0 0 chrX 766442 766750 -161833180 - AluSx SINE Alu -4 308 1 281 232 24 19 chrX 767531 767638 -161832292 - MLT1C LTR MaLR -353 114 31 896 97 0 0 chrX 767696 767809 -161832121 + AluSg SINE Alu 1 113 -197 989 85 0 0 chrX 767809 767938 -161831992 + L1PA8 LINE L1 6034 6162 -10 421 217 0 23 chrX 767960 768085 -161831845 - MLT1D LTR MaLR -10 495 260 846 122 0 0 chrX 768085 768208 -161831722 + AluSp/q SINE Alu 190 312 -1 2087 104 10 23 chrX 768493 768800 -161831130 + AluSc SINE Alu 6 308 -1 562 75 54 21 chrX 768940 769033 -161830897 + MER4A LTR ERV1 3 98 -566 257 59 0 0 chrX 769045 769079 -161830851 + Alu SINE Alu 1 34 -266 944 142 25 12 chrX 969362 969524 -161630406 + AluJo/FRAM SINE Alu 136 299 -13 1202 130 12 0 chrX 970145 970314 -161629616 - AluSg/x SINE Alu -10 300 130 1043 145 54 0 chrX 970409 970575 -161629355 - AluSq SINE Alu -5 308 134 2394 103 3 0 chrX 970575 970877 -161629053 - AluSq SINE Alu -10 303 1 180 0 0 0 chrX 971245 971265 -161628665 + (TA)n Simple_repeat Simple_repeat 1 20 0 2427 82 0 0 chrX 971355 971646 -161628284 - AluSx SINE Alu -8 304 14 4671 79 92 0 chrX 971965 972597 -161627333 - LTR8 LTR ERV1 -1 690 1 2545 116 83 2 chrX 973115 973511 -161626419 + MSTA LTR MaLR 1 428 0 2112 128 0 0 chrX 973616 973906 -161626024 + AluSx SINE Alu 1 290 -22 366 244 0 0 chrX 974070 974205 -161625725 + CT-rich Low_complexity Low_complexity 2 136 0 598 186 6 6 chrX 974218 974379 -161625551 + CT-rich Low_complexity Low_complexity 2 162 0 409 239 6 6 chrX 974396 974572 -161625358 + CT-rich Low_complexity Low_complexity 1 176 0 266 300 33 0 chrX 974592 974682 -161625248 + CT-rich Low_complexity Low_complexity 2 94 0 1683 181 23 13 chrX 974899 975208 -161624722 + AluJo SINE Alu 1 312 0 2189 106 7 3 chrX 975493 975786 -161624144 + AluSx SINE Alu 1 294 -18 2283 92 0 3 chrX 976238 976530 -161623400 + AluSc SINE Alu 1 291 -18 21 0 0 0 chrX 976530 976551 -161623379 + AT_rich Low_complexity Low_complexity 1 21 0 2147 137 0 3 chrX 976618 976924 -161623006 - AluSx SINE Alu -4 308 4 2086 71 0 8 chrX 977487 977742 -161622188 + AluSq SINE Alu 1 253 -60 924 182 18 0 chrX 977742 977907 -161622023 + AluJb SINE Alu 145 312 0 905 126 0 14 chrX 978416 978559 -161621371 - FRAM SINE Alu -3 173 33 29 0 0 0 chrX 978905 978934 -161620996 + AT_rich Low_complexity Low_complexity 1 29 0 211 237 40 45 chrX 979190 979367 -161620563 + (TATATG)n Simple_repeat Simple_repeat 5 180 0 * 393 203 38 30 chrX 979292 979662 -161620268 + (TA)n Simple_repeat Simple_repeat 1 372 0 750 231 40 5 chrX 980141 980340 -161619590 + MER20 DNA MER1_type 7 212 -7 224 256 33 44 chrX 980827 981007 -161618923 + (TTATA)n Simple_repeat Simple_repeat 1 178 0 222 192 62 27 chrX 980942 981088 -161618842 + (TA)n Simple_repeat Simple_repeat 1 151 0 * 230 259 25 49 chrX 981083 981245 -161618685 + (TATAA)n Simple_repeat Simple_repeat 5 162 0 210 241 59 6 chrX 981331 981501 -161618429 + (TA)n Simple_repeat Simple_repeat 1 179 0 * 328 166 44 61 chrX 981435 981616 -161618314 + (TTATA)n Simple_repeat Simple_repeat 3 180 0 426 133 0 53 chrX 981811 981886 -161618044 - AluS SINE Alu -246 72 2 30 27 0 0 chrX 981921 981958 -161617972 + AT_rich Low_complexity Low_complexity 1 37 0 2144 122 21 0 chrX 982185 982473 -161617457 - AluSq SINE Alu -19 294 1 2203 111 9 19 chrX 982592 982907 -161617023 + AluSx SINE Alu 1 312 0 401 129 14 0 chrX 982908 982978 -161616952 + (TA)n Simple_repeat Simple_repeat 1 71 0 313 156 0 78 chrX 983119 983196 -161616734 + MER53 DNA DNA 119 189 0 1850 128 28 24 chrX 984328 984616 -161615314 + AluJo SINE Alu 1 289 -23 937 135 0 0 chrX 985837 985970 -161613960 - L1PA16 LINE L1 -248 5918 5786 805 167 177 37 chrX 985966 986181 -161613749 + L1PA16 LINE L1 5922 6166 0 * 239 53 0 26 chrX 986272 986310 -161613620 + (CAAAAA)n Simple_repeat Simple_repeat 2 38 0 1769 165 3 7 chrX 986344 986629 -161613301 - AluJb SINE Alu -5 307 24 1934 147 0 20 chrX 986932 987224 -161612706 - AluJo SINE Alu -26 286 1 1774 166 39 3 chrX 987624 987908 -161612022 + AluJo SINE Alu 1 294 -18 425 237 59 25 chrX 987997 988115 -161611815 - MLT1J LTR MaLR -164 347 226 1751 174 7 3 chrX 988341 988639 -161611291 - AluJo SINE Alu -13 299 1 2163 127 0 7 chrX 989321 989628 -161610302 + AluSx SINE Alu 1 305 -7 1752 149 57 20 chrX 990344 990645 -161609285 + AluJb SINE Alu 1 312 0 2651 46 0 0 chrX 990648 990955 -161608975 + AluY SINE Alu 1 307 -4 267 257 36 36 chrX 991261 991401 -161608529 + (TA)n Simple_repeat Simple_repeat 1 140 0 1644 163 41 24 chrX 992048 992222 -161607708 - AluJb SINE Alu -13 299 116 303 49 0 0 chrX 992222 992263 -161607667 + (TG)n Simple_repeat Simple_repeat 2 42 0 1644 163 41 24 chrX 992263 992382 -161607548 - AluJb SINE Alu -196 116 1 1841 171 3 0 chrX 993616 993942 -161605988 - AluJo SINE Alu 0 312 1 836 150 111 28 chrX 994054 994234 -161605696 - MER4E-int LTR ERV1 -1653 5105 4911 1658 174 0 7 chrX 994234 994516 -161605414 - MER4E LTR ERV1 0 779 500 3508 138 29 16 chrX 994530 995090 -161604840 + MER50 LTR ERV1 1 571 -163 2430 76 0 7 chrX 995090 995392 -161604538 - AluSq SINE Alu -13 300 1 3508 138 29 16 chrX 995392 995411 -161604519 + MER50 LTR ERV1 571 588 -146 1001 137 18 12 chrX 995411 995579 -161604351 - MER4E-int LTR ERV1 -2421 4337 4169 1600 99 5 9 chrX 995579 995792 -161604138 + AluSq SINE Alu 85 296 -17 471 138 0 0 chrX 995808 995888 -161604042 - MER4E-int LTR ERV1 -2572 4186 4107 2881 118 60 128 chrX 995910 996017 -161603913 + MER4A LTR ERV1 2 115 -664 207 0 0 0 chrX 996017 996040 -161603890 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 2881 118 60 128 chrX 996040 996638 -161603292 + MER4A LTR ERV1 115 779 0 769 145 7 62 chrX 996638 996783 -161603147 - MER4E-int LTR ERV1 -2653 4105 3969 281 186 17 0 chrX 996783 996842 -161603088 + MER72 LTR ERV1 663 722 0 4459 105 2 3 chrX 996865 997466 -161602464 - MER4A LTR ERV1 0 600 1 4899 136 8 45 chrX 997466 997478 -161602452 - MER4E-int LTR ERV1 -2794 3964 3953 2061 159 14 30 chrX 997478 997848 -161602082 + THE1B LTR MaLR 1 364 0 4899 136 8 45 chrX 997848 998181 -161601749 - MER4E-int LTR ERV1 -2805 3953 3609 2101 134 0 3 chrX 998181 998473 -161601457 + AluSx SINE Alu 5 295 -17 4899 136 8 45 chrX 998473 998575 -161601355 - MER4E-int LTR ERV1 -3149 3609 3505 1477 115 55 0 chrX 998575 998793 -161601137 - MER30 DNA MER1_type 0 230 1 4899 136 8 45 chrX 998793 999187 -161600743 - MER4E-int LTR ERV1 -3253 3505 3152 1379 201 21 97 chrX 999187 999471 -161600459 + LTR9 LTR ERV1 1 305 -307 2293 83 0 10 chrX 999471 999793 -161600137 + AluSq SINE Alu 1 319 0 1379 201 21 97 chrX 999793 999847 -161600083 + LTR9 LTR ERV1 305 305 -307 1998 91 4 0 chrX 999847 1000101 -161599829 + AluSp SINE Alu 47 301 -12 1379 201 21 97 chrX 1000101 1000183 -161599747 + LTR9 LTR ERV1 304 391 -221 936 184 116 54 chrX 1000161 1000438 -161599492 + LTR19C LTR ERV1 486 779 0 * 1558 151 36 4 chrX 1000439 1000717 -161599213 - MER4E-int LTR ERV1 -3604 3154 2868 963 271 43 88 chrX 1000728 1001237 -161598693 + LTR1B LTR ERV1 39 524 -302 12676 150 64 73 chrX 1001344 1001569 -161598361 - MER4E-int LTR ERV1 -3885 2873 2647 1619 163 10 27 chrX 1001569 1001869 -161598061 + AluJo SINE Alu 1 295 -17 12676 150 64 73 chrX 1001869 1002479 -161597451 - MER4E-int LTR ERV1 -4111 2647 2033 2212 119 0 10 chrX 1002479 1002781 -161597149 - AluSg SINE Alu -11 299 1 12676 150 64 73 chrX 1002781 1002858 -161597072 - MER4E-int LTR ERV1 -4725 2033 1957 2181 119 0 3 chrX 1002858 1003161 -161596769 + AluSx SINE Alu 1 302 -10 12676 150 64 73 chrX 1003161 1004065 -161595865 - MER4E-int LTR ERV1 -4801 1957 1046 2274 105 20 0 chrX 1004065 1004371 -161595559 + AluSx SINE Alu 1 312 0 12676 150 64 73 chrX 1004371 1005445 -161594485 - MER4E-int LTR ERV1 -5712 1046 6 2365 159 84 16 chrX 1005449 1005889 -161594041 - MER4E LTR ERV1 0 779 310 972 219 21 29 chrX 1005889 1006095 -161593835 + L1MC4 LINE L1 7316 7521 -521 2226 110 0 0 chrX 1006095 1006394 -161593536 + AluSx SINE Alu 1 299 -13 972 219 21 29 chrX 1006394 1006429 -161593501 + L1MC4 LINE L1 7521 7555 -487 232 254 59 35 chrX 1006463 1006632 -161593298 - L1M4 LINE L1 -3861 2285 2113 1666 155 3 91 chrX 1007054 1007073 -161592857 - AluJo SINE Alu -6 306 287 180 0 0 0 chrX 1007073 1007093 -161592837 + (TAG)n Simple_repeat Simple_repeat 1 20 0 1666 155 3 91 chrX 1007093 1007402 -161592528 - AluJo SINE Alu -25 287 7 2135 122 70 14 chrX 1007573 1007917 -161592013 + THE1B LTR MaLR 1 363 -1 23 33 0 0 chrX 1008364 1008394 -161591536 + AT_rich Low_complexity Low_complexity 1 30 0 323 34 134 0 chrX 1008394 1008513 -161591417 + (TA)n Simple_repeat Simple_repeat 2 136 0 396 222 0 30 chrX 1008516 1008615 -161591315 - L1MA7 LINE L1 -25 6266 6171 * 427 149 14 0 chrX 1008613 1008687 -161591243 + L1MA7 LINE L1 6043 6117 -174 281 308 47 0 chrX 1008794 1008901 -161591029 - MIR SINE MIR -52 210 99 2005 60 0 8 chrX 1009348 1009598 -161590332 + AluSq SINE Alu 1 248 -65 457 118 13 0 chrX 1009816 1009892 -161590038 + Alu SINE Alu 225 301 -10 437 132 44 22 chrX 1009892 1009983 -161589947 - L1MB3 LINE L1 -5 6178 6086 2088 121 0 3 chrX 1009985 1010267 -161589663 + AluSx SINE Alu 6 286 -26 512 101 14 0 chrX 1010310 1010379 -161589551 + AluJ/FLAM SINE Alu 9 78 -234 1857 166 130 13 chrX 1010409 1010801 -161589129 + MER66B LTR ERV1 48 485 -1 479 284 132 11 chrX 1011052 1011242 -161588688 - MIR SINE MIR -2 260 48 217 115 19 39 chrX 1012537 1012589 -161587341 + CT-rich Low_complexity Low_complexity 3 53 0 661 169 11 33 chrX 1012605 1012788 -161587142 + CT-rich Low_complexity Low_complexity 2 180 0 1146 153 0 0 chrX 1012846 1013023 -161586907 - AluSg/x SINE Alu 0 310 134 385 239 69 96 chrX 1013169 1013387 -161586543 + MLT1L LTR MaLR 225 461 -75 1380 235 72 70 chrX 1013966 1014013 -161585917 + MER74B LTR ERVL 57 102 -520 1570 166 72 11 chrX 1014013 1014291 -161585639 - AluJo SINE Alu -17 295 1 1380 235 72 70 chrX 1014291 1014371 -161585559 + MER74B LTR ERVL 102 180 -442 1924 127 81 35 chrX 1014371 1014718 -161585212 + THE1B LTR MaLR 2 364 0 1380 235 72 70 chrX 1014718 1015129 -161584801 + MER74B LTR ERVL 180 597 -25 530 178 139 0 chrX 1015142 1015243 -161584687 + FLAM_C SINE Alu 4 118 -15 32 0 0 0 chrX 1015243 1015275 -161584655 + AT_rich Low_complexity Low_complexity 1 32 0 2183 117 0 0 chrX 1015328 1015635 -161584295 + AluSx SINE Alu 1 307 0 324 158 0 0 chrX 1015978 1016035 -161583895 + GA-rich Low_complexity Low_complexity 3 59 0 1263 82 10 46 chrX 1016055 1016250 -161583680 - AluSg/x SINE Alu -4 306 119 206 398 12 12 chrX 1016458 1016619 -161583311 + GA-rich Low_complexity Low_complexity 3 163 0 * 239 321 0 42 chrX 1016577 1016745 -161583185 + A-rich Low_complexity Low_complexity 2 162 0 302 62 0 0 chrX 1016883 1016931 -161582999 + AluSp/q SINE Alu 256 303 0 679 270 42 5 chrX 1017257 1017472 -161582458 + LTR16C LTR ERVL 224 446 -45 22 0 0 0 chrX 1017508 1017530 -161582400 + AT_rich Low_complexity Low_complexity 1 22 0 1650 174 7 37 chrX 1017530 1017829 -161582101 - AluJo SINE Alu -22 290 1 1997 138 7 0 chrX 1017844 1018141 -161581789 - AluSx SINE Alu -11 301 3 1742 185 7 0 chrX 1019768 1020071 -161579859 - 7SLRNA srpRNA srpRNA 0 320 16 1637 201 0 26 chrX 1020139 1020448 -161579482 + AluJo SINE Alu 1 301 -11 1143 82 0 0 chrX 1020749 1020884 -161579046 + AluSx SINE Alu 1 135 -178 40424 73 10 6 chrX 1020895 1027035 -161572895 + L1PA6 LINE L1 11 6174 0 1049 189 0 0 chrX 1027051 1027220 -161572710 + AluSx SINE Alu 129 297 -15 1712 147 41 10 chrX 1027385 1027678 -161572252 + AluJo SINE Alu 1 302 -10 240 301 27 0 chrX 1028616 1028689 -161571241 + CT-rich Low_complexity Low_complexity 5 79 0 310 97 0 32 chrX 1028699 1028761 -161571169 + (TG)n Simple_repeat Simple_repeat 2 61 0 1834 98 8 0 chrX 1029193 1029438 -161570492 + AluSx SINE Alu 50 296 -16 1804 138 0 56 chrX 1029976 1030295 -161569635 - AluJo SINE Alu -11 301 1 28 0 0 0 chrX 1030830 1030858 -161569072 + AT_rich Low_complexity Low_complexity 1 28 0 1714 137 63 4 chrX 1030900 1031171 -161568759 - AluJo SINE Alu -17 295 9 229 155 0 71 chrX 1031239 1031323 -161568607 + T-rich Low_complexity Low_complexity 1 78 0 3278 170 17 7 chrX 1031346 1031923 -161568007 - L1MA8 LINE L1 -13 6278 5696 2865 69 6 0 chrX 1032156 1032506 -161567424 - L1PB1 LINE L1 -7 6144 5793 294 29 0 0 chrX 1032506 1032541 -161567389 + (TG)n Simple_repeat Simple_repeat 1 35 0 2046 96 25 53 chrX 1032743 1032853 -161567077 - L1PB1 LINE L1 -364 5787 5675 264 30 0 0 chrX 1032853 1032886 -161567044 + (TTG)n Simple_repeat Simple_repeat 1 33 0 2133 108 0 0 chrX 1032886 1033165 -161566765 - AluSx SINE Alu -33 279 1 2046 96 25 53 chrX 1033165 1033375 -161566555 - L1PB1 LINE L1 -474 5677 5475 24 85 0 0 chrX 1033873 1033932 -161565998 + AT_rich Low_complexity Low_complexity 1 59 0 667 171 0 16 chrX 1033945 1034068 -161565862 - L1MA5A LINE L1 -5 6292 6172 498 278 179 0 chrX 1034089 1034251 -161565679 + MIR SINE MIR 42 232 -30 236 210 30 10 chrX 1034335 1034648 -161565282 + (TA)n Simple_repeat Simple_repeat 1 319 0 264 184 41 0 chrX 1034667 1034814 -161565116 + (TA)n Simple_repeat Simple_repeat 1 153 0 534 259 179 0 chrX 1034847 1035009 -161564921 - MIR SINE MIR -30 232 42 290 250 35 43 chrX 1035030 1035146 -161564784 + L1MA5A LINE L1 6172 6286 -11 21 0 0 0 chrX 1035146 1035167 -161564763 + AT_rich Low_complexity Low_complexity 1 21 0 314 197 17 11 chrX 1035167 1035345 -161564585 + (TA)n Simple_repeat Simple_repeat 1 179 0 2167 151 34 77 chrX 1036098 1036594 -161563336 - L1MA8 LINE L1 -1 6290 5816 469 210 4 4 chrX 1036950 1037188 -161562742 + CT-rich Low_complexity Low_complexity 1 238 0 4023 99 4 4 chrX 1037320 1037855 -161562075 + L1PA11 LINE L1 5639 6173 -1 2635 133 70 0 chrX 1038368 1038766 -161561164 - MSTA LTR MaLR 0 428 3 2755 134 5 2 chrX 1038768 1039171 -161560759 - MSTA-int LTR MaLR 0 1651 1248 437 353 95 17 chrX 1040105 1040400 -161559530 + L1MC4a LINE L1 5612 5929 -1879 1168 0 38 13 chrX 1040530 1040689 -161559241 + (TCTA)n Simple_repeat Simple_repeat 4 166 0 695 205 0 0 chrX 1040690 1040802 -161559128 - FLAM_A SINE Alu -25 117 6 2021 166 28 8 chrX 1041129 1041485 -161558445 + MLT1A1 LTR MaLR 1 363 -2 1909 179 65 3 chrX 1042268 1042637 -161557293 - MER89 LTR ERV1 0 559 168 1143 247 0 0 chrX 1042960 1043183 -161556747 - MER58A DNA MER1_type 0 224 2 283 257 14 0 chrX 1043303 1043373 -161556557 + MER34C LTR ERV1 24 94 -491 767 199 0 0 chrX 1043375 1043529 -161556401 + FRAM SINE Alu 1 62 0 247 237 17 0 chrX 1043894 1043953 -161555977 + LTR48B LTR ERV1 1 60 -584 1053 220 46 85 chrX 1044175 1044440 -161555490 + MER39 LTR ERV1 150 424 -283 1696 157 3 21 chrX 1044440 1044727 -161555203 + AluSx SINE Alu 1 282 -30 1053 220 46 85 chrX 1044727 1044909 -161555021 + MER39 LTR ERV1 424 707 0 200 122 0 49 chrX 1045527 1045568 -161554362 + (GAA)n Simple_repeat Simple_repeat 1 39 0 1446 185 45 24 chrX 1046922 1047209 -161552721 + AluJb SINE Alu 1 293 -19 1794 80 4 4 chrX 1047710 1047936 -161551994 + AluSc SINE Alu 1 226 -83 32 0 0 0 chrX 1048120 1048152 -161551778 + AT_rich Low_complexity Low_complexity 1 32 0 2184 91 3 0 chrX 1048152 1048437 -161551493 - AluY SINE Alu -25 286 1 3591 58 9 0 chrX 1048547 1048979 -161550951 + MLT2A1 LTR ERVL 1 436 -8 1380 160 43 19 chrX 1049472 1049728 -161550202 - MLT2C2 LTR ERVL -5 459 198 1408 144 0 0 chrX 1049728 1049943 -161549987 - AluSg/x SINE Alu -13 297 83 1141 179 25 0 chrX 1049943 1050144 -161549786 - MLT2C1 LTR ERVL -191 206 1 311 81 40 14 chrX 1050393 1050467 -161549463 + (TCTA)n Simple_repeat Simple_repeat 1 76 0 788 177 0 48 chrX 1050485 1050632 -161549298 + FLAM_C SINE Alu 2 141 -2 1817 192 73 84 chrX 1050634 1051180 -161548750 - LTR64 LTR ERVK -18 540 1 255 109 46 45 chrX 1051183 1051241 -161548689 + MLT2B2 LTR ERVL 475 515 0 427 122 73 0 chrX 1052376 1052458 -161547472 - L1MC2 LINE L1 -2 6342 6255 3458 110 15 68 chrX 1052462 1052544 -161547386 - MER4B LTR ERV1 0 779 694 4289 141 5 11 chrX 1052544 1053183 -161546747 - MER41B LTR ERV1 0 635 1 3458 110 15 68 chrX 1053183 1053713 -161546217 - MER4B LTR ERV1 -85 694 32 2179 113 3 3 chrX 1053713 1054013 -161545917 - AluSx SINE Alu -12 300 1 3458 110 15 68 chrX 1054013 1054044 -161545886 - MER4B LTR ERV1 -747 32 1 269 216 0 0 chrX 1054069 1054120 -161545810 - L1MC2 LINE L1 -129 6215 6165 2268 141 18 39 chrX 1054122 1054638 -161545292 - MER4A LTR ERV1 -2 662 90 1592 97 63 295 chrX 1054650 1055375 -161544555 - LTR12 LTR ERV1 -156 558 2 650 116 0 11 chrX 1055375 1055470 -161544460 - MER4A LTR ERV1 -570 94 1 394 174 12 23 chrX 1055470 1055556 -161544374 - L1MC2 LINE L1 -176 6168 6084 1809 128 4 0 chrX 1055663 1055921 -161544009 - AluSx SINE Alu -53 259 1 1466 219 29 0 chrX 1056021 1056299 -161543631 - AluJo SINE Alu -26 286 1 2009 158 0 0 chrX 1056306 1056617 -161543313 - AluJb SINE Alu -1 311 1 2167 236 33 9 chrX 1056617 1057159 -161542771 - L1MB5 LINE L1 -32 6142 5615 2278 104 7 0 chrX 1057159 1057458 -161542472 - AluSp SINE Alu -12 301 1 2167 236 33 9 chrX 1057458 1057476 -161542454 - L1MB5 LINE L1 -559 5615 5599 1950 148 3 10 chrX 1057496 1057806 -161542124 + AluSx SINE Alu 5 312 0 495 113 0 0 chrX 1058012 1058074 -161541856 + AluSc SINE Alu 2 63 -250 1494 114 0 0 chrX 1058074 1058267 -161541663 + AluSc SINE Alu 101 293 -16 2107 146 14 6 chrX 1058274 1058623 -161541307 - MLT1A1 LTR MaLR -2 363 12 1217 161 21 0 chrX 1058908 1059101 -161540829 + AluJo SINE Alu 6 202 -110 2081 143 0 10 chrX 1059110 1059418 -161540512 - AluSx SINE Alu -7 305 1 205 217 57 38 chrX 1060038 1060144 -161539786 + (TCCA)n Simple_repeat Simple_repeat 3 110 0 545 219 24 0 chrX 1060144 1060440 -161539490 + (TCTA)n Simple_repeat Simple_repeat 1 303 0 204 258 16 0 chrX 1060503 1060565 -161539365 + (TA)n Simple_repeat Simple_repeat 2 64 0 * 209 194 0 0 chrX 1060530 1060566 -161539364 + (CATA)n Simple_repeat Simple_repeat 2 37 0 310 298 16 8 chrX 1060598 1060719 -161539211 + (TCCA)n Simple_repeat Simple_repeat 3 124 0 671 132 17 35 chrX 1060741 1060915 -161539015 + (TCTA)n Simple_repeat Simple_repeat 1 171 0 302 296 30 15 chrX 1060917 1061049 -161538881 + (TCCA)n Simple_repeat Simple_repeat 1 134 0 * 332 273 0 48 chrX 1061001 1061188 -161538742 + (TCTA)n Simple_repeat Simple_repeat 1 178 0 * 334 298 16 8 chrX 1061100 1061224 -161538706 + (TCCA)n Simple_repeat Simple_repeat 3 127 0 644 126 30 18 chrX 1061257 1061424 -161538506 + (TCTA)n Simple_repeat Simple_repeat 4 172 0 339 170 9 27 chrX 1061436 1061548 -161538382 + (TCTA)n Simple_repeat Simple_repeat 4 113 0 655 218 12 98 chrX 1062502 1062746 -161537184 + L1MA4 LINE L1 6077 6298 -2 221 89 36 36 chrX 1063036 1063092 -161536838 + (TA)n Simple_repeat Simple_repeat 2 57 0 198 71 0 0 chrX 1063120 1063148 -161536782 + (TA)n Simple_repeat Simple_repeat 2 29 0 1351 101 291 0 chrX 1063578 1063805 -161536125 + AluSx SINE Alu 1 293 -9 1089 206 11 35 chrX 1064268 1064308 -161535622 - MLT1D LTR MaLR 0 505 466 1688 202 3 3 chrX 1064308 1064605 -161535325 + AluJb SINE Alu 1 297 -15 1089 206 11 35 chrX 1064605 1065018 -161534912 - MLT1D LTR MaLR -39 466 2 22 0 0 0 chrX 1065064 1065086 -161534844 + AT_rich Low_complexity Low_complexity 1 22 0 962 211 88 53 chrX 1065089 1065430 -161534500 - MLT1C LTR MaLR -114 353 1 802 197 185 31 chrX 1065440 1065736 -161534194 - MLT1C LTR MaLR -144 361 1 22 56 0 0 chrX 1065745 1065781 -161534149 + AT_rich Low_complexity Low_complexity 1 36 0 2862 176 94 25 chrX 1066198 1066336 -161533594 - LTR26 LTR ERV1 0 603 476 2034 136 7 0 chrX 1066336 1066631 -161533299 - AluSq SINE Alu -16 297 1 2862 176 94 25 chrX 1066631 1067056 -161532874 - LTR26 LTR ERV1 -127 476 1 1375 184 4 0 chrX 1067692 1067926 -161532004 - L1PA16 LINE L1 -9 6157 5923 290 214 11 34 chrX 1067942 1068031 -161531899 - L1MA9 LINE L1 -30 6282 6196 1765 143 7 33 chrX 1068157 1068430 -161531500 + AluJo SINE Alu 1 266 -46 1879 107 4 32 chrX 1068430 1068686 -161531244 - L1PA16 LINE L1 -230 5936 5687 1805 193 0 0 chrX 1068686 1068981 -161530949 - AluJb SINE Alu -17 295 1 1879 107 4 32 chrX 1068981 1069004 -161530926 - L1PA16 LINE L1 -479 5687 5665 24 53 0 0 chrX 1069383 1069421 -161530509 + AT_rich Low_complexity Low_complexity 1 38 0 200 259 0 17 chrX 1069448 1069506 -161530424 + (TG)n Simple_repeat Simple_repeat 2 58 0 643 118 57 10 chrX 1069537 1069946 -161529984 + (TAGA)n Simple_repeat Simple_repeat 1 428 0 315 96 0 0 chrX 1069946 1069998 -161529932 + (CATA)n Simple_repeat Simple_repeat 1 52 0 2245 69 24 0 chrX 1070657 1070945 -161528985 + AluY SINE Alu 1 295 -16 4275 141 38 0 chrX 1071026 1071684 -161528246 - L1PA16 LINE L1 -8 6158 5476 356 121 4 0 chrX 1071691 1071811 -161528119 - MADE1 DNA Mariner 0 80 1 195 259 121 35 chrX 1071831 1071947 -161527983 - MIR SINE MIR -1 261 136 226 235 41 24 chrX 1072545 1072715 -161527215 + (TA)n Simple_repeat Simple_repeat 1 173 0 22 35 0 0 chrX 1072724 1072753 -161527177 + AT_rich Low_complexity Low_complexity 1 29 0 823 178 0 0 chrX 1072790 1072919 -161527011 + FRAM SINE Alu 23 151 -25 22 80 0 0 chrX 1072951 1073001 -161526929 + AT_rich Low_complexity Low_complexity 1 50 0 382 170 33 55 chrX 1073105 1073287 -161526643 + (TTATA)n Simple_repeat Simple_repeat 1 178 0 294 211 51 23 chrX 1073641 1073816 -161526114 + (TA)n Simple_repeat Simple_repeat 1 180 0 227 186 43 0 chrX 1073879 1073949 -161525981 + (TA)n Simple_repeat Simple_repeat 2 74 0 949 264 55 42 chrX 1074563 1074942 -161524988 + MLT1B LTR MaLR 1 384 -6 2007 99 70 0 chrX 1075514 1075787 -161524143 + AluSp SINE Alu 1 292 -21 551 15 15 0 chrX 1075798 1075866 -161524064 + (CA)n Simple_repeat Simple_repeat 2 70 0 736 174 0 43 chrX 1075902 1076040 -161523890 - FLAM_C SINE Alu -9 134 3 2400 130 30 25 chrX 1076166 1076528 -161523402 + THE1B LTR MaLR 1 364 0 391 206 0 11 chrX 1076689 1076781 -161523149 - L1MC4 LINE L1 -17 8025 7935 186 133 0 0 chrX 1076819 1076849 -161523081 + (TC)n Simple_repeat Simple_repeat 2 31 0 1460 237 72 86 chrX 1076858 1077604 -161522326 - L1MC4 LINE L1 -135 7907 7172 25 31 0 0 chrX 1077614 1077646 -161522284 + AT_rich Low_complexity Low_complexity 1 32 0 2296 107 3 0 chrX 1078374 1078682 -161521248 - AluSg1 SINE Alu 0 309 1 3173 123 11 0 chrX 1079933 1080388 -161519542 - L1PB2 LINE L1 -9 6142 5683 2291 75 4 0 chrX 1080432 1080711 -161519219 + AluSc SINE Alu 13 292 -17 506 260 82 41 chrX 1080936 1081155 -161518775 - L2 LINE L2 -52 3261 3034 24 0 0 0 chrX 1081193 1081217 -161518713 + AT_rich Low_complexity Low_complexity 1 24 0 235 347 31 0 chrX 1081217 1081315 -161518615 - L2 LINE L2 -277 3036 2936 412 172 35 0 chrX 1081892 1081979 -161517951 - L1MB3 LINE L1 0 6183 6094 2219 166 20 43 chrX 1081982 1082427 -161517503 - L1MA4 LINE L1 -280 6020 5586 2138 123 3 3 chrX 1083243 1083553 -161516377 - AluSq SINE Alu -3 310 1 1629 156 7 19 chrX 1084664 1084933 -161514997 + MER2 DNA MER2_type 1 266 -79 651 238 10 10 chrX 1084935 1085141 -161514789 + L1M4 LINE L1 4993 5198 -948 211 216 0 54 chrX 1085164 1085238 -161514692 + A-rich Low_complexity Low_complexity 1 70 0 323 277 0 0 chrX 1085264 1085329 -161514601 - MER2 DNA MER2_type -1 344 280 424 195 80 0 chrX 1085332 1085445 -161514485 + L1M4 LINE L1 4643 4764 -1382 29 47 0 0 chrX 1085485 1085528 -161514402 + AT_rich Low_complexity Low_complexity 1 43 0 2518 258 76 8 chrX 1085560 1086508 -161513422 - L1M4 LINE L1 -948 5198 4187 2222 109 3 0 chrX 1086528 1086822 -161513108 + AluSq SINE Alu 6 300 -13 2191 125 3 0 chrX 1086826 1087129 -161512801 + AluSp SINE Alu 1 304 -9 21 36 0 0 chrX 1087208 1087236 -161512694 + AT_rich Low_complexity Low_complexity 1 28 0 1558 151 44 4 chrX 1087236 1087507 -161512423 - L1PA16 LINE L1 -10 6156 5875 475 246 41 8 chrX 1088212 1088334 -161511596 + L1MA9 LINE L1 6178 6303 -9 2157 128 0 3 chrX 1088403 1088708 -161511222 + AluSx SINE Alu 1 304 -8 180 111 0 0 chrX 1088914 1088941 -161510989 + (TTTC)n Simple_repeat Simple_repeat 3 29 0 1470 156 7 68 chrX 1089136 1089355 -161510575 - L1MA5A LINE L1 -15 6282 6084 3771 132 4 9 chrX 1089355 1089885 -161510045 - MER1A DNA MER1_type 0 527 1 1470 156 7 68 chrX 1089885 1089960 -161509970 - L1MA5A LINE L1 -213 6084 6006 2196 124 0 0 chrX 1090970 1091268 -161508662 + AluSx SINE Alu 1 298 -14 1069 203 64 0 chrX 1091443 1091679 -161508251 - AluJo SINE Alu -61 251 1 1775 141 163 68 chrX 1091929 1092298 -161507632 - MER4A LTR ERV1 0 664 261 481 111 100 11 chrX 1092298 1092388 -161507542 - MER4A LTR ERV1 -566 98 1 1020 211 26 103 chrX 1092613 1093029 -161506901 - MLT1B LTR MaLR 0 390 7 181 336 26 43 chrX 1093058 1093174 -161506756 - MIR SINE MIR -139 123 10 2372 181 37 45 chrX 1093178 1093446 -161506484 + MER66B LTR ERV1 1 265 -221 1912 127 0 7 chrX 1093446 1093722 -161506208 + AluSx SINE Alu 36 309 -3 2372 181 37 45 chrX 1093722 1093940 -161505990 + MER66B LTR ERV1 265 483 -3 1184 130 52 23 chrX 1093983 1094227 -161505703 + L1PB1 LINE L1 5693 5941 -215 211 403 21 27 chrX 1094532 1094718 -161505212 - MIR3 SINE MIR -5 203 19 345 337 46 17 chrX 1094894 1095069 -161504861 + MIR SINE MIR 73 252 -10 1942 149 3 0 chrX 1096706 1097008 -161502922 - AluJb SINE Alu -9 303 1 265 226 20 0 chrX 1097231 1097302 -161502628 - MER45A DNA AcHobo -1 177 103 2948 113 5 27 chrX 1097324 1097607 -161502323 + MER57B LTR ERV1 1 272 -162 2352 52 7 29 chrX 1097607 1097914 -161502016 - AluY SINE Alu -11 300 1 2948 113 5 27 chrX 1097914 1098074 -161501856 + MER57B LTR ERV1 272 434 0 265 200 0 0 chrX 1098074 1098124 -161501806 - MER45A DNA AcHobo -50 128 79 767 243 44 56 chrX 1098141 1098550 -161501380 - MER34B LTR ERV1 -8 557 76 1721 87 0 0 chrX 1098592 1098823 -161501107 + L1PA12 LINE L1 5813 6043 -125 1694 129 25 73 chrX 1098823 1099186 -161500744 - MER4A LTR ERV1 0 664 261 489 186 21 10 chrX 1099186 1099283 -161500647 - MER4A LTR ERV1 -566 98 1 423 91 0 0 chrX 1099283 1099338 -161500592 + L1PA13 LINE L1 6040 6094 -69 347 194 83 28 chrX 1099342 1099450 -161500480 - MER34C LTR ERV1 -435 150 37 7948 35 1 0 chrX 1099526 1101163 -161498767 - L1PA3 LINE L1 -2 6153 4514 3428 168 21 33 chrX 1101163 1101440 -161498490 - LTR51 LTR ERV1 -14 657 378 1796 154 48 7 chrX 1101440 1101732 -161498198 + AluJb SINE Alu 4 307 -5 3428 168 21 33 chrX 1101732 1101911 -161498019 - LTR51 LTR ERV1 -293 378 198 1806 173 0 20 chrX 1101911 1102206 -161497724 + AluJb SINE Alu 1 289 -23 3428 168 21 33 chrX 1102206 1102413 -161497517 - LTR51 LTR ERV1 -473 198 1 2172 197 10 18 chrX 1102636 1103037 -161496893 + MER57A LTR ERV1 2 399 -4 639 169 0 119 chrX 1103037 1103197 -161496733 - AluJb SINE Alu -23 289 149 1051 139 0 0 chrX 1103568 1103726 -161496204 + FRAM SINE Alu 12 169 -7 820 148 0 0 chrX 1103791 1103906 -161496024 + AluJ SINE Alu 5 119 -193 455 171 0 24 chrX 1103898 1103980 -161495950 - AluY SINE Alu -227 83 4 * 1036 203 5 0 chrX 1103987 1104184 -161495746 + AluJ SINE Alu 107 304 -8 2249 110 0 3 chrX 1104209 1104510 -161495420 + AluSg SINE Alu 1 300 -10 813 150 21 50 chrX 1104553 1104693 -161495237 + AluJo SINE Alu 1 136 -176 1114 214 18 7 chrX 1104833 1105109 -161494821 + L1MA4 LINE L1 6022 6300 0 333 351 61 63 chrX 1105389 1105565 -161494365 - L2 LINE L2 -164 3108 2933 1350 249 32 99 chrX 1105565 1105910 -161494020 + LTR45 LTR ERV1 1 368 -157 1824 166 10 13 chrX 1105910 1106223 -161493707 - AluJo SINE Alu 0 312 1 1350 249 32 99 chrX 1106223 1106372 -161493558 + LTR45 LTR ERV1 368 455 -70 1595 185 10 3 chrX 1106372 1106664 -161493266 + AluJb SINE Alu 6 299 -13 1350 249 32 99 chrX 1106664 1106731 -161493199 + LTR45 LTR ERV1 455 525 0 333 351 61 63 chrX 1106731 1107157 -161492773 - L2 LINE L2 -339 2933 2511 1738 180 7 16 chrX 1107294 1107599 -161492331 - AluSx SINE Alu -8 304 3 2236 118 0 6 chrX 1108440 1108754 -161491176 + AluSx SINE Alu 1 312 0 872 163 0 15 chrX 1109077 1109212 -161490718 - FLAM_C SINE Alu 0 133 1 792 233 81 106 chrX 1110044 1110537 -161489393 - MLT1D LTR MaLR -24 481 1 379 195 58 12 chrX 1110548 1110689 -161489241 - MLT1D LTR MaLR -123 360 191 797 178 0 0 chrX 1110802 1110920 -161489010 - FLAM_C SINE Alu -15 118 1 744 224 33 22 chrX 1111051 1111234 -161488696 - MLT1D LTR MaLR -320 185 1 222 105 0 0 chrX 1112704 1112742 -161487188 + (GA)n Simple_repeat Simple_repeat 2 39 0 509 105 30 63 chrX 1112742 1112986 -161486944 + (TAGA)n Simple_repeat Simple_repeat 1 235 0 604 48 29 19 chrX 1113006 1113109 -161486821 + (GAAA)n Simple_repeat Simple_repeat 4 107 0 425 208 15 15 chrX 1113108 1113289 -161486641 + (TAGA)n Simple_repeat Simple_repeat 1 180 -465 * 2493 124 5 27 chrX 1113289 1113661 -161486269 + THE1B LTR MaLR 1 364 0 425 208 15 15 chrX 1113661 1113753 -161486177 + (TAGA)n Simple_repeat Simple_repeat 180 645 0 1779 162 0 32 chrX 1114765 1115074 -161484856 - AluJb SINE Alu -13 299 1 1240 236 0 0 chrX 1115157 1115399 -161484531 - AluJb SINE Alu -20 292 51 180 0 0 0 chrX 1115399 1115419 -161484511 + (TTA)n Simple_repeat Simple_repeat 2 21 0 2089 119 0 4 chrX 1115419 1115696 -161484234 - AluSx SINE Alu -28 284 9 2202 167 29 12 chrX 1115703 1116122 -161483808 - L1MC1 LINE L1 -1 6332 5907 2196 113 0 0 chrX 1117172 1117500 -161482430 + AluSx SINE Alu 1 328 0 616 176 43 152 chrX 1118316 1118526 -161481404 - MER39B LTR ERV1 -402 251 65 324 127 0 0 chrX 1118547 1118602 -161481328 + (CA)n Simple_repeat Simple_repeat 2 56 0 1883 160 13 7 chrX 1118656 1118963 -161480967 + AluJb SINE Alu 1 309 -3 1070 153 49 0 chrX 1120196 1120399 -161479531 - MER65A LTR ERV1 0 445 233 899 143 0 0 chrX 1120399 1120532 -161479398 + FLAM_C SINE Alu 1 133 0 369 190 10 47 chrX 1120539 1120811 -161479119 + GA-rich Low_complexity Low_complexity 1 261 0 556 177 10 0 chrX 1122078 1122174 -161477756 - AluJ/FLAM SINE Alu -214 98 2 1006 143 20 31 chrX 1122176 1122372 -161477558 - MER39B LTR ERV1 -384 269 76 * 2600 91 0 6 chrX 1122355 1122707 -161477223 + MER41A LTR ERV1 205 554 0 374 100 17 0 chrX 1122707 1122767 -161477163 + MER4E LTR ERV1 706 766 0 231 114 0 0 chrX 1122913 1122948 -161476982 + (TC)n Simple_repeat Simple_repeat 1 35 0 225 254 48 0 chrX 1122955 1123018 -161476912 + CT-rich Low_complexity Low_complexity 3 68 0 395 185 31 17 chrX 1123029 1123403 -161476527 + CT-rich Low_complexity Low_complexity 1 379 0 731 313 47 49 chrX 1123528 1124042 -161475888 + MER34 LTR ERV1 1 513 -29 225 0 0 0 chrX 1124462 1124487 -161475443 + (GAAA)n Simple_repeat Simple_repeat 2 26 0 911 137 6 22 chrX 1124533 1124716 -161475214 + (TTC)n Simple_repeat Simple_repeat 1 180 0 1869 148 39 7 chrX 1124723 1125006 -161474924 - AluJo SINE Alu -19 293 2 357 145 0 0 chrX 1125766 1125842 -161474088 + (CA)n Simple_repeat Simple_repeat 2 77 0 206 174 0 22 chrX 1125880 1125926 -161474004 + T-rich Low_complexity Low_complexity 3 47 0 23 0 0 0 chrX 1126113 1126136 -161473794 + AT_rich Low_complexity Low_complexity 1 23 0 2423 87 0 13 chrX 1126761 1127071 -161472859 + AluSq SINE Alu 3 308 -5 3565 120 24 0 chrX 1127243 1127777 -161472153 + L1PB4 LINE L1 5610 6156 0 21 0 0 0 chrX 1127860 1127881 -161472049 + AT_rich Low_complexity Low_complexity 1 21 0 1201 225 30 27 chrX 1128082 1128380 -161471550 - MLT1C LTR MaLR 0 467 169 888 142 0 47 chrX 1128407 1128555 -161471375 - AluJb SINE Alu -171 141 1 242 156 44 22 chrX 1128559 1128604 -161471326 - MLT1C LTR MaLR -215 175 130 712 223 113 87 chrX 1128857 1129350 -161470580 + MER34C LTR ERV1 5 490 -75 1925 164 3 0 chrX 1130012 1130305 -161469625 - AluJb SINE Alu -18 294 1 1016 156 21 1 chrX 1130331 1130527 -161469403 + L1MB5 LINE L1 5613 5804 -370 1016 144 22 0 chrX 1130527 1130707 -161469223 + L1MB5 LINE L1 5980 6163 -11 1016 156 21 1 chrX 1130707 1130731 -161469199 + L1MB5 LINE L1 5804 6163 -11 1695 168 10 17 chrX 1130905 1131197 -161468733 - AluJb SINE Alu -22 290 1 839 171 0 36 chrX 1131197 1131337 -161468593 - AluJb SINE Alu -177 135 1 21 0 0 0 chrX 1131462 1131483 -161468447 + AT_rich Low_complexity Low_complexity 1 21 0 1617 161 4 11 chrX 1131484 1131744 -161468186 + AluJb SINE Alu 1 258 -54 31 26 0 0 chrX 1131756 1131794 -161468136 + AT_rich Low_complexity Low_complexity 1 38 0 216 184 0 0 chrX 1132364 1132413 -161467517 + (CA)n Simple_repeat Simple_repeat 1 49 0 2011 152 0 0 chrX 1132496 1132806 -161467124 + AluSx SINE Alu 1 310 -2 1830 176 0 28 chrX 1132921 1133240 -161466690 - AluJo SINE Alu -2 310 1 193 322 76 34 chrX 1133350 1133468 -161466462 + MIR3 SINE MIR 83 205 -3 750 180 0 22 chrX 1136324 1136463 -161463467 + FLAM_C SINE Alu 8 143 0 1516 180 60 7 chrX 1136471 1136755 -161463175 + AluJo SINE Alu 3 301 -11 189 0 0 0 chrX 1136935 1136956 -161462974 + (CAAAA)n Simple_repeat Simple_repeat 2 22 0 2089 141 3 0 chrX 1137154 1137453 -161462477 - AluSx SINE Alu -12 300 1 1932 167 0 0 chrX 1137752 1138045 -161461885 - AluJo SINE Alu -19 293 1 1708 182 3 35 chrX 1138362 1138681 -161461249 + AluJo SINE Alu 1 309 -3 2272 90 0 29 chrX 1138788 1139100 -161460830 + AluSx SINE Alu 1 303 -9 1159 116 0 0 chrX 1139103 1139258 -161460672 + AluSg/x SINE Alu 141 295 -17 746 212 11 38 chrX 1139621 1139805 -161460125 + MLT1B LTR MaLR 2 180 -210 766 178 0 22 chrX 1139805 1139940 -161459990 + FLAM_C SINE Alu 2 133 -10 726 205 22 32 chrX 1139945 1140111 -161459819 + MLT1B LTR MaLR 176 341 -126 2132 118 29 50 chrX 1140111 1140494 -161459436 + THE1C LTR MaLR 1 375 0 726 205 22 32 chrX 1140494 1140512 -161459418 + MLT1B LTR MaLR 341 358 -109 497 193 28 0 chrX 1140520 1140665 -161459265 + (TA)n Simple_repeat Simple_repeat 1 149 0 2202 127 36 28 chrX 1140928 1141289 -161458641 + THE1B LTR MaLR 1 364 0 3958 113 0 11 chrX 1142281 1142841 -161457089 - MER41A LTR ERV1 0 554 1 1541 150 33 57 chrX 1142841 1143174 -161456756 + L1MC1 LINE L1 6009 6333 0 263 225 38 0 chrX 1143185 1143265 -161456665 + L1M4 LINE L1 5815 5897 -287 883 124 58 0 chrX 1143266 1143403 -161456527 - LTR12 LTR ERV1 -234 480 336 441 101 130 0 chrX 1143403 1143472 -161456458 + AluJb SINE Alu 209 286 -26 1804 154 20 29 chrX 1143741 1144047 -161455883 - AluJo SINE Alu -9 303 1 33 0 0 0 chrX 1144829 1144862 -161455068 + AT_rich Low_complexity Low_complexity 1 33 0 1269 173 18 162 chrX 1144867 1145317 -161454613 - L1PA15 LINE L1 0 6165 5781 262 127 1 52 chrX 1145339 1145397 -161454533 + L1P2 LINE L1 5774 5828 -327 312 267 0 22 chrX 1145431 1145521 -161454409 - L1MC4 LINE L1 -1339 6703 6616 211 257 14 14 chrX 1145522 1145561 -161454369 + (TA)n Simple_repeat Simple_repeat 1 42 -32 545 113 0 0 chrX 1145561 1145641 -161454289 + MADE1 DNA Mariner 1 80 0 211 257 14 14 chrX 1145641 1145675 -161454255 + (TA)n Simple_repeat Simple_repeat 41 74 0 923 151 0 0 chrX 1145676 1145822 -161454108 - L1PA15 LINE L1 -368 5788 5643 596 262 12 0 chrX 1146285 1146457 -161453473 - MER96B DNA MER1_type? -243 174 1 180 176 0 0 chrX 1146541 1146575 -161453355 + (TATG)n Simple_repeat Simple_repeat 3 36 0 1726 195 7 0 chrX 1146614 1146912 -161453018 - AluJo SINE Alu -12 300 1 833 187 0 0 chrX 1146926 1147060 -161452870 - AluJo SINE Alu -178 134 1 225 176 0 0 chrX 1147080 1147114 -161452816 + Tigger5 DNA MER2_type 2273 2306 -17 315 206 14 14 chrX 1147164 1147237 -161452693 + Tigger5 DNA MER2_type 2251 2323 0 440 150 35 0 chrX 1147237 1147350 -161452580 + (TA)n Simple_repeat Simple_repeat 1 117 0 27 29 0 0 chrX 1147383 1147417 -161452513 + AT_rich Low_complexity Low_complexity 1 34 0 191 35 0 35 chrX 1147465 1147494 -161452436 + (TA)n Simple_repeat Simple_repeat 1 28 0 397 270 70 0 chrX 1147789 1147904 -161452026 + MER77 LTR ERV1 77 199 -406 1098 236 96 47 chrX 1147952 1148358 -161451572 + MER77 LTR ERV1 173 598 -7 357 109 0 0 chrX 1148550 1148605 -161451325 + (GA)n Simple_repeat Simple_repeat 2 56 0 2172 123 0 0 chrX 1149854 1150139 -161449791 + AluSx SINE Alu 11 295 -17 3231 86 36 2 chrX 1150969 1151410 -161448520 + L1PA13 LINE L1 5683 6138 -25 * 4547 119 1 35 chrX 1151402 1152118 -161447812 - L1PA15 LINE L1 -162 6003 5312 800 148 56 14 chrX 1152119 1152261 -161447669 + THE1C LTR MaLR 1 148 -227 1852 174 17 62 chrX 1152730 1153133 -161446797 + MLT1B LTR MaLR 3 387 -3 1598 161 56 7 chrX 1153179 1153465 -161446465 + MLT1A1 LTR MaLR 64 363 -2 685 242 6 0 chrX 1153599 1153756 -161446174 + L1PB4 LINE L1 5994 6151 -5 1756 175 9 62 chrX 1154749 1154794 -161445136 - L1MB8 LINE L1 -6 6172 6126 1637 195 30 0 chrX 1154794 1155091 -161444839 - AluJo SINE Alu -6 306 1 1756 175 9 62 chrX 1155091 1155467 -161444463 - L1MB8 LINE L1 -52 6126 5773 985 90 0 34 chrX 1155824 1156002 -161443928 + (TTCC)n Simple_repeat Simple_repeat 2 173 0 1653 173 10 33 chrX 1156026 1156508 -161443422 - AluJo SINE Alu 0 312 6 1283 237 58 89 chrX 1156640 1156928 -161443002 - MER77 LTR ERV1 -8 597 360 2415 156 44 2 chrX 1156928 1157339 -161442591 - MSTA LTR MaLR 0 428 1 1283 237 58 89 chrX 1157339 1157600 -161442330 - MER77 LTR ERV1 -245 360 92 310 125 42 0 chrX 1157749 1157797 -161442133 + MLT1D LTR MaLR 1 50 -455 277 188 42 0 chrX 1157798 1157846 -161442084 + MLT1D LTR MaLR 1 50 -455 239 81 54 0 chrX 1157854 1157891 -161442039 + MLT1D LTR MaLR 12 50 -455 1801 185 91 8 chrX 1157892 1158275 -161441655 + MLT1D LTR MaLR 1 415 -90 532 200 31 7 chrX 1158913 1159208 -161440722 + GA-rich Low_complexity Low_complexity 1 302 0 274 233 31 8 chrX 1159253 1159382 -161440548 + GA-rich Low_complexity Low_complexity 2 133 0 334 180 22 22 chrX 1159397 1159486 -161440444 + GA-rich Low_complexity Low_complexity 2 90 0 382 153 81 0 chrX 1159497 1159608 -161440322 + GA-rich Low_complexity Low_complexity 4 123 0 200 250 0 13 chrX 1159644 1159720 -161440210 + GA-rich Low_complexity Low_complexity 3 77 0 2000 131 166 66 chrX 1160738 1161149 -161438781 - LTR47A LTR ERVL 0 452 1 241 148 49 0 chrX 1162866 1162927 -161437003 + (TATG)n Simple_repeat Simple_repeat 4 67 0 2011 150 0 6 chrX 1163884 1164198 -161435732 - AluSx SINE Alu 0 312 1 904 198 51 42 chrX 1164366 1164583 -161435347 + MER20 DNA MER1_type 1 219 0 473 161 39 13 chrX 1164617 1164772 -161435158 + (TCTA)n Simple_repeat Simple_repeat 3 161 0 2270 128 30 41 chrX 1164772 1165140 -161434790 - THE1B LTR MaLR 0 364 1 428 35 17 0 chrX 1165142 1165200 -161434730 + (TCTA)n Simple_repeat Simple_repeat 3 61 0 724 207 93 5 chrX 1165204 1165397 -161434533 + MER20 DNA MER1_type 1 210 -9 291 140 0 0 chrX 1166861 1166911 -161433019 + (CATA)n Simple_repeat Simple_repeat 4 53 0 454 220 14 24 chrX 1167013 1167314 -161432616 + (TATATG)n Simple_repeat Simple_repeat 1 297 0 253 211 0 84 chrX 1167358 1167453 -161432477 - L1MC4 LINE L1 -1341 6701 6615 196 200 10 40 chrX 1167464 1167564 -161432366 + (TA)n Simple_repeat Simple_repeat 2 98 0 195 243 0 29 chrX 1167598 1167701 -161432229 + (TA)n Simple_repeat Simple_repeat 1 100 0 242 233 22 22 chrX 1167703 1167793 -161432137 + L1MC4 LINE L1 6614 6703 -1339 223 247 0 21 chrX 1167796 1167893 -161432037 + (TATG)n Simple_repeat Simple_repeat 4 98 0 21 36 0 0 chrX 1168779 1168807 -161431123 + AT_rich Low_complexity Low_complexity 1 28 0 647 196 0 6 chrX 1169104 1169283 -161430647 + GA-rich Low_complexity Low_complexity 2 179 0 455 212 7 0 chrX 1169378 1169524 -161430406 + GA-rich Low_complexity Low_complexity 2 148 0 2252 102 0 0 chrX 1169658 1169951 -161429979 - AluSx SINE Alu -13 299 7 415 182 107 16 chrX 1170033 1170154 -161429776 - L1MB4 LINE L1 -25 6155 6024 * 797 228 82 30 chrX 1170135 1170253 -161429677 + L1MB7 LINE L1 5692 5802 -382 2564 123 76 27 chrX 1170253 1170661 -161429269 - MSTA LTR MaLR 0 428 1 797 228 82 30 chrX 1170661 1170774 -161429156 + L1MB7 LINE L1 5802 5935 -249 1916 107 70 0 chrX 1170880 1171150 -161428780 + AluSx SINE Alu 3 291 -21 255 103 0 0 chrX 1171710 1171749 -161428181 + (TGAA)n Simple_repeat Simple_repeat 1 39 0 1932 186 55 28 chrX 1172212 1172743 -161427187 - MLT2A2 LTR ERVL 0 554 1 1319 234 64 39 chrX 1173990 1174425 -161425505 - MLT1C LTR MaLR 0 467 22 2291 125 36 22 chrX 1176144 1176503 -161423427 + THE1B LTR MaLR 1 364 0 1511 181 55 43 chrX 1176508 1176856 -161423074 + MLT1A2 LTR MaLR 23 374 0 746 270 99 69 chrX 1176859 1177239 -161422691 + MLT1D LTR MaLR 59 455 -50 2673 138 19 0 chrX 1177239 1177592 -161422338 - L1PB1 LINE L1 0 6151 5787 270 0 0 0 chrX 1177592 1177622 -161422308 + (TG)n Simple_repeat Simple_repeat 2 31 0 2673 138 19 0 chrX 1177622 1177681 -161422249 - L1PB1 LINE L1 -364 5787 5731 746 270 99 69 chrX 1177681 1177734 -161422196 + MLT1D LTR MaLR 455 505 0 3068 248 14 3 chrX 1178181 1178826 -161421104 + MER82 DNA MER2_type 1 652 -1 2237 97 0 13 chrX 1179475 1179773 -161420157 - AluSc SINE Alu -15 294 1 2051 129 20 0 chrX 1179773 1180067 -161419863 - AluSx SINE Alu -12 300 1 2145 174 14 8 chrX 1180092 1180455 -161419475 + MLT1A1 LTR MaLR 1 365 0 2597 71 0 0 chrX 1181156 1181467 -161418463 + AluY SINE Alu 1 311 0 768 179 19 13 chrX 1181774 1181930 -161418000 - L1MB3 LINE L1 -7 6176 6020 2478 96 8 22 chrX 1181956 1182321 -161417609 - L1PB1 LINE L1 -80 6071 5712 905 167 4 132 chrX 1182372 1182540 -161417390 + MER82 DNA MER2_type 212 337 -316 1664 165 0 112 chrX 1182540 1182879 -161417051 - AluJo SINE Alu -1 301 1 905 167 4 132 chrX 1182879 1182967 -161416963 + MER82 DNA MER2_type 337 435 -218 213 213 0 0 chrX 1182974 1183021 -161416909 + (TG)n Simple_repeat Simple_repeat 2 48 0 291 293 52 9 chrX 1183833 1183949 -161415981 - L1MB7 LINE L1 -15 6169 6049 272 61 0 0 chrX 1183949 1183982 -161415948 - U2 snRNA snRNA -155 33 1 1760 188 31 53 chrX 1183986 1184402 -161415528 - L1MB5 LINE L1 -114 6060 5654 450 293 177 24 chrX 1184602 1184936 -161414994 + L2 LINE L2 2927 3311 -2 314 121 0 17 chrX 1185390 1185448 -161414482 + (TCC)n Simple_repeat Simple_repeat 1 57 0 801 205 118 46 chrX 1185448 1185643 -161414287 - AluJo SINE Alu -18 294 86 1385 165 5 22 chrX 1185643 1185867 -161414063 - AluJo SINE Alu -92 220 1 194 121 30 0 chrX 1187582 1187615 -161412315 + (CA)n Simple_repeat Simple_repeat 1 34 0 1884 148 13 10 chrX 1187862 1188167 -161411763 - AluJo SINE Alu -6 306 1 2525 120 3 0 chrX 1188189 1188555 -161411375 - L1PB4 LINE L1 0 6156 5790 1120 127 6 0 chrX 1188555 1188713 -161411217 + THE1B LTR MaLR 3 161 -203 8822 57 16 1 chrX 1188713 1190582 -161409348 - L1PA6 LINE L1 -4 6150 4287 1976 43 30 0 chrX 1190583 1190818 -161409112 + L1PA6 LINE L1 4045 4286 -1860 1141 115 72 48 chrX 1190818 1191026 -161408904 + THE1B LTR MaLR 152 364 0 1298 119 12 27 chrX 1191026 1191278 -161408652 - L1PB4 LINE L1 -360 5796 5550 1253 219 32 69 chrX 1191862 1191935 -161407995 + MLT1A1 LTR MaLR 1 75 -290 2028 117 23 94 chrX 1191935 1192328 -161407602 + MLT1A1 LTR MaLR 1 365 0 1253 219 32 69 chrX 1192328 1192633 -161407297 + MLT1A1 LTR MaLR 75 365 0 2121 156 35 20 chrX 1192809 1192998 -161406932 + L1MA7 LINE L1 5889 6074 -217 2363 129 116 13 chrX 1192998 1193386 -161406544 - MSTA LTR MaLR 0 428 1 2121 156 35 20 chrX 1193386 1193593 -161406337 + L1MA7 LINE L1 6074 6291 0 885 147 27 7 chrX 1194067 1194217 -161405713 - L1MA4 LINE L1 -302 5998 5846 758 283 90 28 chrX 1194217 1194652 -161405278 + MER20B DNA MER1_type 292 753 -30 423 0 0 0 chrX 1194985 1195032 -161404898 + (TTA)n Simple_repeat Simple_repeat 2 48 0 1708 179 0 11 chrX 1195035 1195320 -161404610 - AluJo SINE Alu -30 282 1 986 181 68 0 chrX 1195619 1195796 -161404134 - MER5A DNA MER1_type 0 189 1 3686 148 50 2 chrX 1195946 1196521 -161403409 - LTR26 LTR ERV1 0 603 1 693 193 8 0 chrX 1197894 1198013 -161401917 - L1MC1 LINE L1 0 6333 6214 365 153 0 0 chrX 1198020 1198079 -161401851 + L1MC1 LINE L1 5791 5849 -484 485 154 23 17 chrX 1198196 1198371 -161401559 + (TA)n Simple_repeat Simple_repeat 1 176 0 1172 196 117 56 chrX 1198430 1198772 -161401158 + MLT1A1 LTR MaLR 1 363 -2 199 270 95 0 chrX 1199830 1199893 -161400037 + MIR SINE MIR 102 170 -92 23 0 0 0 chrX 1200180 1200203 -161399727 + AT_rich Low_complexity Low_complexity 1 23 0 5362 128 19 8 chrX 1200204 1201038 -161398892 - L1PA15 LINE L1 -2 6163 5321 2151 140 0 6 chrX 1201038 1201352 -161398578 - AluSx SINE Alu 0 312 1 21 36 0 0 chrX 1201429 1201457 -161398473 + AT_rich Low_complexity Low_complexity 1 28 0 1717 184 7 3 chrX 1203427 1203732 -161396198 + AluJo SINE Alu 1 306 -6 1459 104 4 0 chrX 1204517 1204538 -161395392 + L1P4 LINE L1 5573 5592 -559 2530 83 0 93 chrX 1204538 1204935 -161394995 - L1PA14 LINE L1 -2 6159 5800 1459 104 4 0 chrX 1204935 1205132 -161394798 + L1PA14 LINE L1 5592 5800 -351 368 180 0 0 chrX 1205825 1205886 -161394044 + MER63 DNA MER1_type 687 747 -89 227 374 0 0 chrX 1205891 1205974 -161393956 + MER63 DNA MER1_type 979 1061 -1 1858 105 201 10 chrX 1206761 1207074 -161392856 + THE1C LTR MaLR 3 375 0 996 133 0 0 chrX 1207170 1207350 -161392580 + (TA)n Simple_repeat Simple_repeat 1 180 0 1712 170 10 14 chrX 1207352 1207640 -161392290 - AluJo SINE Alu -25 287 1 1561 125 38 19 chrX 1207965 1208229 -161391701 + L1MA5A LINE L1 6029 6297 0 337 202 0 21 chrX 1208310 1208404 -161391526 + GA-rich Low_complexity Low_complexity 1 92 0 306 250 15 0 chrX 1208651 1208719 -161391211 + MER5B DNA MER1_type 1 69 -109 317 184 0 13 chrX 1208766 1208842 -161391088 + GA-rich Low_complexity Low_complexity 2 76 0 562 263 39 19 chrX 1208853 1209058 -161390872 + L1ME LINE L1 5439 5647 -474 28 91 0 0 chrX 1209338 1209415 -161390515 + AT_rich Low_complexity Low_complexity 1 77 0 663 209 11 6 chrX 1209700 1209877 -161390053 + CT-rich Low_complexity Low_complexity 3 180 0 343 253 135 70 chrX 1211229 1211458 -161388472 - MLT1J2 LTR MaLR -143 307 64 253 228 33 11 chrX 1212170 1212262 -161387668 + (TA)n Simple_repeat Simple_repeat 2 95 0 564 215 20 108 chrX 1212671 1212866 -161387064 + MER5B DNA MER1_type 1 178 0 460 269 14 28 chrX 1213151 1213292 -161386638 + MIR SINE MIR 68 206 -56 24 0 0 0 chrX 1213892 1213916 -161386014 + AT_rich Low_complexity Low_complexity 1 24 0 408 191 0 0 chrX 1214406 1214495 -161385435 + (ATG)n Simple_repeat Simple_repeat 3 91 0 224 314 98 49 chrX 1214745 1215009 -161384921 - L2 LINE L2 -674 2640 2364 228 355 0 0 chrX 1215211 1215287 -161384643 - MLT1I LTR MaLR -236 173 98 1162 243 80 39 chrX 1216152 1216592 -161383338 - MLT1C LTR MaLR -8 459 2 552 219 73 35 chrX 1216603 1216883 -161383047 - MLT1D LTR MaLR -144 361 14 713 232 81 32 chrX 1216896 1217193 -161382737 - MLT1C LTR MaLR -122 345 24 1162 182 5 5 chrX 1217455 1217664 -161382266 - AluJo SINE Alu -4 308 100 1485 171 25 18 chrX 1217664 1217938 -161381992 + AluJo SINE Alu 24 299 -13 2098 119 36 7 chrX 1218158 1218461 -161381469 - AluSx SINE Alu 0 312 1 2097 145 0 0 chrX 1219264 1219574 -161380356 - AluSx SINE Alu -2 310 1 2417 66 3 7 chrX 1219871 1220174 -161379756 + AluY SINE Alu 1 302 -9 2387 139 58 0 chrX 1221173 1221517 -161378413 + THE1B LTR MaLR 1 364 0 1840 163 0 0 chrX 1222056 1222366 -161377564 - AluJb SINE Alu 0 310 1 1088 124 10 161 chrX 1222771 1222989 -161376941 - Tigger4(Zombi) DNA MER2_type -5 2726 2561 1454 204 25 0 chrX 1222989 1223269 -161376661 - AluJo SINE Alu -25 287 1 1088 124 10 161 chrX 1223269 1223341 -161376589 - Tigger4(Zombi) DNA MER2_type -170 2561 2480 1957 146 0 17 chrX 1223342 1223644 -161376286 + AluJb SINE Alu 1 297 -15 418 244 0 0 chrX 1223721 1223803 -161376127 - Tigger4(Zombi) DNA MER2_type -2649 82 1 4205 141 19 16 chrX 1223868 1224377 -161375553 + MER41B LTR ERV1 1 514 -121 2362 100 7 0 chrX 1224377 1224687 -161375243 - AluSx SINE Alu 0 312 1 4205 141 19 16 chrX 1224687 1224810 -161375120 + MER41B LTR ERV1 514 635 0 3587 111 61 23 chrX 1225368 1225938 -161373992 - MER4B LTR ERV1 -9 601 10 2496 200 28 48 chrX 1226866 1227431 -161372499 - MLT2B3 LTR ERVL 0 554 1 238 207 0 52 chrX 1227431 1227489 -161372441 + MLT1A1 LTR MaLR 308 362 -3 532 165 0 0 chrX 1227630 1227721 -161372209 + L1PB4 LINE L1 6061 6151 -5 889 223 5 11 chrX 1228114 1228302 -161371628 - MLT1A1 LTR MaLR -17 348 162 515 155 10 0 chrX 1228304 1228407 -161371523 + GA-rich Low_complexity Low_complexity 2 105 0 22 0 0 0 chrX 1228794 1228816 -161371114 + AT_rich Low_complexity Low_complexity 1 22 0 259 77 0 0 chrX 1229828 1229859 -161370071 - MADE1 DNA Mariner 0 80 47 2064 139 0 0 chrX 1229859 1230161 -161369769 + AluSx SINE Alu 1 302 -10 931 211 70 26 chrX 1230163 1230448 -161369482 + MSTD LTR MaLR 48 389 -7 1762 173 0 19 chrX 1230792 1231099 -161368831 - AluJo SINE Alu -11 301 1 213 94 0 0 chrX 1231325 1231357 -161368573 + (TAA)n Simple_repeat Simple_repeat 2 33 0 43 71 0 0 chrX 1231362 1231447 -161368483 + AT_rich Low_complexity Low_complexity 1 85 0 810 158 0 0 chrX 1231487 1231607 -161368323 + FLAM_C SINE Alu 6 125 -18 4523 97 8 0 chrX 1231904 1232491 -161367439 - L1PA10 LINE L1 -4 6164 5573 257 211 42 28 chrX 1232498 1232569 -161367361 - MLT1E3 LTR MaLR -8 616 545 1776 135 8 15 chrX 1233095 1233412 -161366518 + Tigger2 DNA MER2_type 1 2609 -109 216 202 10 40 chrX 1233483 1233582 -161366348 + (TATAA)n Simple_repeat Simple_repeat 2 97 0 182 123 27 55 chrX 1233624 1233697 -161366233 + (TATAA)n Simple_repeat Simple_repeat 5 75 0 224 288 34 0 chrX 1233721 1233867 -161366063 + (TA)n Simple_repeat Simple_repeat 1 151 0 544 213 9 19 chrX 1233868 1233976 -161365954 + Tigger2 DNA MER2_type 2601 2707 -11 22 80 0 0 chrX 1233976 1234026 -161365904 + AT_rich Low_complexity Low_complexity 1 50 0 444 305 41 15 chrX 1234161 1234358 -161365572 + MLT1H LTR MaLR 87 288 -261 514 249 154 6 chrX 1234385 1234554 -161365376 + MLT1H LTR MaLR 356 549 0 430 260 26 42 chrX 1234621 1234813 -161365117 + HAL1 LINE L1 1486 1674 -833 24 109 0 0 chrX 1235367 1235468 -161364462 + AT_rich Low_complexity Low_complexity 1 101 0 828 173 0 0 chrX 1236401 1236528 -161363402 + FLAM_C SINE Alu 1 127 -16 1919 166 0 0 chrX 1237047 1237342 -161362588 - AluJb SINE Alu -15 297 3 2565 121 20 3 chrX 1237372 1237728 -161362202 + THE1B LTR MaLR 1 362 -2 1781 174 0 0 chrX 1239249 1239530 -161360400 - AluJb SINE Alu -23 289 9 1795 147 0 53 chrX 1240661 1240981 -161358949 - AluJo SINE Alu -9 303 1 1526 172 36 7 chrX 1241417 1241696 -161358234 + MER2 DNA MER2_type 28 314 -31 1274 186 17 0 chrX 1241759 1241995 -161357935 + AluJb SINE Alu 52 291 -21 234 179 0 0 chrX 1243128 1243184 -161356746 + (TCTA)n Simple_repeat Simple_repeat 3 58 0 775 140 22 27 chrX 1243206 1243541 -161356389 + (TCTA)n Simple_repeat Simple_repeat 1 333 0 235 288 0 0 chrX 1243810 1243869 -161356061 + LTR16A LTR ERVL 385 443 -7 1827 160 3 3 chrX 1244355 1244649 -161355281 - AluJo SINE Alu -18 294 1 233 232 18 0 chrX 1244736 1244792 -161355138 - L1ME3A LINE L1 -114 6056 6000 1675 169 3 40 chrX 1245374 1245514 -161354416 - AluJo SINE Alu -20 292 148 2869 105 47 0 chrX 1245514 1245923 -161354007 + MSTA LTR MaLR 1 428 0 1675 169 3 40 chrX 1245923 1246084 -161353846 - AluJo SINE Alu -164 148 2 2302 121 23 69 chrX 1246457 1246894 -161353036 + L1PB4 LINE L1 5605 6021 -135 398 171 0 0 chrX 1247005 1247075 -161352855 + L1PB4 LINE L1 6079 6148 -8 950 63 39 16 chrX 1247079 1247228 -161352702 + L1PA10 LINE L1 6039 6168 0 510 279 63 82 chrX 1247247 1247617 -161352313 - L1ME3A LINE L1 -248 5922 5579 2161 110 7 0 chrX 1247617 1247909 -161352021 + AluSx SINE Alu 1 294 -18 510 279 63 82 chrX 1247909 1248135 -161351795 - L1ME3A LINE L1 -591 5579 5350 509 254 117 64 chrX 1248179 1248572 -161351358 - L1ME3A LINE L1 -867 5279 4866 282 379 11 32 chrX 1248611 1248801 -161351129 + LTR16C LTR ERVL 73 258 -233 1210 213 54 57 chrX 1248861 1249246 -161350684 - MLT1B LTR MaLR 0 467 4 524 124 0 157 chrX 1249654 1249700 -161350230 + Tigger5 DNA MER2_type 2222 2239 -84 1869 166 16 3 chrX 1249700 1250008 -161349922 - AluJo SINE Alu 0 312 1 524 124 0 157 chrX 1250008 1250082 -161349848 + Tigger5 DNA MER2_type 2239 2323 0 1406 137 5 0 chrX 1250721 1250940 -161348990 - MLT1B LTR MaLR -12 378 159 1249 172 5 9 chrX 1250941 1251176 -161348754 - MLT1B LTR MaLR 0 396 158 1397 225 30 48 chrX 1251178 1251576 -161348354 - MLT1B LTR MaLR -1 395 1 574 213 22 7 chrX 1251941 1252489 -161347441 + GA-rich Low_complexity Low_complexity 1 556 0 236 374 0 0 chrX 1252490 1252573 -161347357 + A-rich Low_complexity Low_complexity 4 86 0 274 132 0 0 chrX 1252824 1252862 -161347068 - MER20 DNA MER1_type 0 219 182 409 105 0 0 chrX 1252863 1252920 -161347010 - Alu SINE Alu -16 296 240 2402 145 3 3 chrX 1253007 1253366 -161346564 - THE1B LTR MaLR 0 364 6 4149 153 15 44 chrX 1253366 1253770 -161346160 + LTR62 LTR ERVK 3 378 -341 1629 167 3 44 chrX 1253770 1254087 -161345843 - AluJb SINE Alu -8 304 1 4149 153 15 44 chrX 1254087 1254416 -161345514 + LTR62 LTR ERVK 378 715 -4 2825 178 10 2 chrX 1255115 1255609 -161344321 - L1MB3 LINE L1 0 6183 5686 677 183 11 22 chrX 1255964 1256144 -161343786 + CT-rich Low_complexity Low_complexity 3 180 0 447 166 36 22 chrX 1256160 1256299 -161343631 + CT-rich Low_complexity Low_complexity 1 141 0 414 79 0 16 chrX 1256684 1256747 -161343183 - L1P4 LINE L1 -671 5495 5434 329 209 91 0 chrX 1256944 1257054 -161342876 + L1P LINE L1 5196 5315 -831 564 231 103 15 chrX 1257054 1257257 -161342673 - THE1C LTR MaLR 0 375 155 276 77 0 0 chrX 1457567 1457606 -161142324 + (TATG)n Simple_repeat Simple_repeat 2 40 0 1643 160 11 4 chrX 1457606 1457887 -161142043 - AluSx SINE Alu -28 284 2 198 0 0 0 chrX 1458941 1458963 -161140967 + (TGAA)n Simple_repeat Simple_repeat 1 22 0 2311 104 0 0 chrX 1459007 1459306 -161140624 + AluSx SINE Alu 1 299 -13 404 222 7 0 chrX 1459440 1459584 -161140346 + CT-rich Low_complexity Low_complexity 2 146 0 647 196 0 6 chrX 1459679 1459858 -161140072 + CT-rich Low_complexity Low_complexity 2 179 0 21 36 0 0 chrX 1460155 1460183 -161139747 + AT_rich Low_complexity Low_complexity 1 28 0 2280 106 3 0 chrX 1460700 1461003 -161138927 - AluSx SINE Alu -8 304 1 986 208 38 5 chrX 1461679 1461891 -161138039 - MER20 DNA MER1_type 0 219 1 439 206 6 40 chrX 1461893 1462068 -161137862 + (TAGA)n Simple_repeat Simple_repeat 4 172 0 934 204 37 28 chrX 1462089 1462305 -161137625 - MER20 DNA MER1_type -1 218 1 487 187 6 42 chrX 1462307 1462473 -161137457 + (TAGA)n Simple_repeat Simple_repeat 4 163 0 469 250 0 48 chrX 1462494 1462662 -161137268 - MER20 DNA MER1_type 0 219 60 1343 153 66 94 chrX 1462801 1463088 -161136842 + LTR47A LTR ERVL 174 452 0 200 250 0 13 chrX 1464106 1464182 -161135748 + CT-rich Low_complexity Low_complexity 3 77 0 382 153 81 0 chrX 1464218 1464329 -161135601 + CT-rich Low_complexity Low_complexity 4 123 0 334 180 22 22 chrX 1464340 1464429 -161135501 + CT-rich Low_complexity Low_complexity 2 90 0 274 233 31 8 chrX 1464444 1464573 -161135357 + CT-rich Low_complexity Low_complexity 2 133 0 568 198 31 7 chrX 1464618 1464912 -161135018 + CT-rich Low_complexity Low_complexity 1 301 0 1801 185 91 8 chrX 1465550 1465933 -161133997 - MLT1D LTR MaLR -90 415 1 239 81 54 0 chrX 1465934 1465971 -161133959 - MLT1D LTR MaLR -455 50 12 277 188 42 0 chrX 1465979 1466027 -161133903 - MLT1D LTR MaLR -455 50 1 310 125 42 0 chrX 1466028 1466076 -161133854 - MLT1D LTR MaLR -455 50 1 1236 241 58 89 chrX 1466225 1466486 -161133444 + MER77 LTR ERV1 92 302 -303 2386 158 44 2 chrX 1466486 1466897 -161133033 + MSTA LTR MaLR 1 428 0 1236 241 58 89 chrX 1466897 1467185 -161132745 + MER77 LTR ERV1 302 597 -8 1775 173 6 26 chrX 1467317 1467754 -161132176 + AluJo SINE Alu 6 436 0 1797 174 0 0 chrX 1468195 1468476 -161131454 - AluJb SINE Alu -23 289 9 1814 147 0 53 chrX 1469607 1469927 -161130003 - AluJo SINE Alu -9 303 1 1483 176 36 7 chrX 1470363 1470642 -161129288 + MER2 DNA MER2_type 28 314 -31 1303 187 21 0 chrX 1470705 1470940 -161128990 + AluJb SINE Alu 52 291 -21 234 179 0 0 chrX 1472074 1472130 -161127800 + (TCTA)n Simple_repeat Simple_repeat 3 58 0 786 127 32 22 chrX 1472162 1472489 -161127441 + (TCTA)n Simple_repeat Simple_repeat 1 330 0 235 288 0 0 chrX 1472758 1472817 -161127113 + LTR16A LTR ERVL 385 443 -7 1834 163 3 3 chrX 1473302 1473596 -161126334 - AluJo SINE Alu -18 294 1 234 232 18 0 chrX 1473683 1473739 -161126191 - L1ME3A LINE L1 -114 6056 6000 1060 113 0 14 chrX 1474320 1474462 -161125468 - FRAM SINE Alu -20 156 17 663 112 0 28 chrX 1474462 1474569 -161125361 + MSTA LTR MaLR 3 106 -322 2253 142 58 0 chrX 1475639 1475983 -161123947 + THE1B LTR MaLR 1 364 0 1860 163 0 0 chrX 1476521 1476831 -161123099 - AluJb SINE Alu 0 310 1 1070 124 10 161 chrX 1477236 1477454 -161122476 - Tigger4(Zombi) DNA MER2_type -5 2726 2561 1473 204 25 0 chrX 1477454 1477734 -161122196 - AluJo SINE Alu -25 287 1 1070 124 10 161 chrX 1477734 1477806 -161122124 - Tigger4(Zombi) DNA MER2_type -170 2561 2480 1995 142 0 17 chrX 1477807 1478109 -161121821 + AluJb SINE Alu 1 297 -15 414 244 0 0 chrX 1478186 1478268 -161121662 - Tigger4(Zombi) DNA MER2_type -2649 82 1 2215 130 32 0 chrX 1478333 1478671 -161121259 + MER41B LTR ERV1 1 349 -286 2048 147 0 6 chrX 1479465 1479779 -161120151 - AluSx SINE Alu 0 312 1 819 197 50 46 chrX 1479947 1480165 -161119765 + MER20 DNA MER1_type 1 219 0 473 161 39 13 chrX 1480199 1480354 -161119576 + (TCTA)n Simple_repeat Simple_repeat 3 161 0 2106 125 33 41 chrX 1480354 1480721 -161119209 - THE1B LTR MaLR 0 364 1 587 39 13 0 chrX 1480723 1480801 -161119129 + (TCTA)n Simple_repeat Simple_repeat 3 81 0 736 207 93 5 chrX 1480805 1480998 -161118932 + MER20 DNA MER1_type 1 210 -9 291 140 0 0 chrX 1482461 1482511 -161117419 + (CATA)n Simple_repeat Simple_repeat 4 53 0 238 264 23 11 chrX 1482628 1482715 -161117215 + L1MC4 LINE L1 6615 6702 -1340 336 224 47 28 chrX 1482857 1482964 -161116966 + MLT1A1 LTR MaLR 256 364 -1 458 261 114 63 chrX 1483253 1483647 -161116283 + L1ME3A LINE L1 4866 5279 -867 492 285 62 79 chrX 1483691 1483917 -161116013 + L1ME3A LINE L1 5350 5578 -592 2198 106 7 0 chrX 1483917 1484209 -161115721 - AluSx SINE Alu -18 294 1 492 285 62 79 chrX 1484209 1484577 -161115353 + L1ME3A LINE L1 5578 5922 -248 904 63 39 16 chrX 1484596 1484745 -161115185 - L1PA10 LINE L1 0 6168 6039 2752 155 23 48 chrX 1484746 1485308 -161114622 - L1PB4 LINE L1 -4 6152 5605 707 224 7 26 chrX 1485684 1485836 -161114094 + AluJo SINE Alu 5 153 -159 1633 108 58 8 chrX 1485842 1486102 -161113828 - MSTA LTR MaLR 0 428 156 870 192 17 17 chrX 1486285 1486457 -161113473 + MSTD LTR MaLR 218 389 -7 1775 173 0 19 chrX 1486801 1487108 -161112822 - AluJo SINE Alu -11 301 1 213 94 0 0 chrX 1487334 1487366 -161112564 + (TAA)n Simple_repeat Simple_repeat 2 33 0 36 82 0 0 chrX 1487371 1487456 -161112474 + AT_rich Low_complexity Low_complexity 1 85 0 812 158 0 0 chrX 1487496 1487616 -161112314 + FLAM_C SINE Alu 6 125 -18 1713 102 42 25 chrX 1487904 1488188 -161111742 - L1PA10 LINE L1 -1 6167 5879 253 141 58 0 chrX 1488493 1488613 -161111317 + GA-rich Low_complexity Low_complexity 1 127 0 709 114 13 27 chrX 1488634 1488783 -161111147 + (GGAA)n Simple_repeat Simple_repeat 3 149 0 1731 173 12 62 chrX 1489133 1489508 -161110422 + L1MB8 LINE L1 5773 6126 -52 1602 195 30 3 chrX 1489508 1489806 -161110124 + AluJo SINE Alu 1 306 -6 1731 173 12 62 chrX 1489806 1489851 -161110079 + L1MB8 LINE L1 6126 6172 -6 685 242 6 0 chrX 1490844 1491001 -161108929 - L1PB4 LINE L1 -5 6151 5994 1542 161 60 7 chrX 1491135 1491420 -161108510 - MLT1A1 LTR MaLR -2 363 64 234 184 61 0 chrX 1491467 1491516 -161108414 - MLT1B LTR MaLR -3 387 336 776 139 0 17 chrX 1491618 1491791 -161108139 + (A)n Simple_repeat Simple_repeat 1 170 0 1880 146 3 43 chrX 1491815 1492165 -161107765 + MSTC LTR MaLR 93 428 0 22 56 0 0 chrX 1492177 1492213 -161107717 + AT_rich Low_complexity Low_complexity 1 36 0 1504 171 38 17 chrX 1492296 1492457 -161107473 - AluJo SINE Alu -19 293 122 384 22 0 0 chrX 1492457 1492502 -161107428 + (TTA)n Simple_repeat Simple_repeat 1 45 0 1504 171 38 17 chrX 1492502 1492627 -161107303 - AluJo SINE Alu -190 122 1 2128 55 4 0 chrX 1492636 1492919 -161107011 - AluY SINE Alu 0 311 28 914 234 23 18 chrX 1493286 1493504 -161106426 + MER20 DNA MER1_type 1 219 0 1143 40 35 6 chrX 1493520 1493694 -161106236 + (TCTA)n Simple_repeat Simple_repeat 2 180 0 1196 173 10 13 chrX 1493886 1494121 -161105809 - MLT1B LTR MaLR 0 396 158 1502 210 24 37 chrX 1494121 1494518 -161105412 - MLT1B LTR MaLR 0 467 1 538 203 31 12 chrX 1494882 1495517 -161104413 + GA-rich Low_complexity Low_complexity 1 647 0 1934 107 70 0 chrX 1495834 1496104 -161103826 + AluSx SINE Alu 3 291 -21 255 103 0 0 chrX 1496664 1496703 -161103227 + (TGAA)n Simple_repeat Simple_repeat 1 39 0 1100 166 20 11 chrX 1497166 1497374 -161102556 - MLT2A2 LTR ERVL 0 453 293 1391 121 11 0 chrX 1498697 1498887 -161101043 - AluSq SINE Alu -121 192 1 241 148 49 0 chrX 1500105 1500166 -161099764 + (CATA)n Simple_repeat Simple_repeat 4 67 0 23 0 0 0 chrX 1501663 1501686 -161098244 + AT_rich Low_complexity Low_complexity 1 23 0 1303 176 41 19 chrX 1501859 1502126 -161097804 - AluJo SINE Alu -16 296 24 991 184 0 0 chrX 1502163 1502321 -161097609 + FRAM SINE Alu 1 158 -8 662 231 83 29 chrX 1502597 1502893 -161097037 + MLT1C LTR MaLR 24 345 -122 547 215 83 49 chrX 1502906 1503111 -161096819 + MLT1D LTR MaLR 14 225 -280 440 250 58 32 chrX 1503211 1503367 -161096563 + MLT1A1 LTR MaLR 18 177 -328 2172 100 16 10 chrX 1503526 1503836 -161096094 - AluSx SINE Alu 0 312 1 775 105 8 16 chrX 1503836 1503960 -161095970 + MER41A LTR ERV1 432 554 0 1170 89 18 6 chrX 1504518 1504686 -161095244 - MER4B LTR ERV1 -9 601 432 515 155 10 0 chrX 1505067 1505170 -161094760 + CT-rich Low_complexity Low_complexity 2 105 0 897 223 5 11 chrX 1505172 1505360 -161094570 + MLT1A1 LTR MaLR 162 348 -17 454 174 11 0 chrX 1505750 1505842 -161094088 - L1PB4 LINE L1 -3 6153 6061 1328 234 64 39 chrX 1506437 1506872 -161093058 - MLT1C LTR MaLR 0 467 22 2119 125 36 22 chrX 1508591 1508950 -161090980 + THE1B LTR MaLR 1 364 0 1364 181 55 43 chrX 1508955 1509303 -161090627 + MLT1A2 LTR MaLR 23 374 0 588 237 55 127 chrX 1509307 1509687 -161090243 + MLT1C LTR MaLR 65 412 -55 2496 136 19 0 chrX 1509687 1510040 -161089890 - L1PB1 LINE L1 0 6151 5787 342 0 0 0 chrX 1510040 1510078 -161089852 + (TG)n Simple_repeat Simple_repeat 2 39 0 2496 136 19 0 chrX 1510078 1510137 -161089793 - L1PB1 LINE L1 -364 5787 5731 588 237 55 127 chrX 1510137 1510190 -161089740 + MLT1C LTR MaLR 412 467 0 2798 236 14 3 chrX 1510660 1511282 -161088648 + MER82 DNA MER2_type 24 652 -1 2257 94 0 13 chrX 1511931 1512230 -161087700 - AluSc SINE Alu -14 295 1 2042 130 20 0 chrX 1512230 1512522 -161087408 - AluSx SINE Alu -14 298 1 1974 171 14 8 chrX 1512547 1512910 -161087020 + MLT1A1 LTR MaLR 1 365 0 2566 71 0 0 chrX 1513611 1513919 -161086011 + AluY SINE Alu 1 308 -3 704 141 0 70 chrX 1514226 1514382 -161085548 - L1MB2 LINE L1 -7 6164 6020 2339 88 8 22 chrX 1514408 1514773 -161085157 - L1PB1 LINE L1 -80 6071 5712 759 172 4 146 chrX 1514824 1514996 -161084934 + MER82 DNA MER2_type 212 336 -317 1485 179 0 104 chrX 1514996 1515331 -161084599 - AluJo SINE Alu -2 300 1 759 172 4 146 chrX 1515331 1515419 -161084511 + MER82 DNA MER2_type 336 435 -218 213 213 0 0 chrX 1515426 1515473 -161084457 + (TG)n Simple_repeat Simple_repeat 2 48 0 188 257 15 125 chrX 1515556 1515692 -161084238 - MIR3 SINE MIR -51 157 37 239 293 52 9 chrX 1516285 1516401 -161083529 - L1MB7 LINE L1 -15 6169 6049 256 61 0 0 chrX 1516401 1516434 -161083496 - U2 snRNA snRNA -155 33 1 1613 180 32 50 chrX 1516438 1516839 -161083091 - L1MB5 LINE L1 -114 6060 5667 472 313 166 22 chrX 1517034 1517389 -161082541 + L2 LINE L2 2906 3311 -2 293 138 0 17 chrX 1517843 1517901 -161082029 + (TCC)n Simple_repeat Simple_repeat 1 57 0 724 205 118 46 chrX 1517901 1518096 -161081834 - AluJo SINE Alu -18 294 86 1404 165 5 22 chrX 1518096 1518320 -161081610 - AluJo SINE Alu -92 220 1 207 0 0 0 chrX 1519890 1519913 -161080017 + (TG)n Simple_repeat Simple_repeat 1 23 0 240 59 0 0 chrX 1519915 1519949 -161079981 + (CA)n Simple_repeat Simple_repeat 1 34 0 1898 148 13 10 chrX 1520195 1520500 -161079430 - AluJo SINE Alu -6 306 1 2334 120 3 0 chrX 1520522 1520888 -161079042 - L1PB4 LINE L1 0 6156 5790 1045 122 6 0 chrX 1520890 1521046 -161078884 + THE1B LTR MaLR 5 161 -203 8257 57 15 1 chrX 1521046 1522916 -161077014 - L1PA6 LINE L1 -4 6150 4287 1845 43 30 0 chrX 1522917 1523152 -161076778 + L1PA6 LINE L1 4045 4286 -1860 1045 96 82 58 chrX 1523152 1523360 -161076570 + THE1B LTR MaLR 152 364 0 1196 83 5 21 chrX 1523360 1523553 -161076377 - L1PB4 LINE L1 -360 5796 5607 1110 214 32 70 chrX 1524206 1524269 -161075661 + MLT1A1 LTR MaLR 11 75 -290 1856 125 20 92 chrX 1524269 1524662 -161075268 + MLT1A1 LTR MaLR 1 365 0 1110 214 32 70 chrX 1524662 1524967 -161074963 + MLT1A1 LTR MaLR 75 365 0 1919 156 35 20 chrX 1525143 1525332 -161074598 + L1MA7 LINE L1 5889 6074 -217 2178 129 116 13 chrX 1525332 1525720 -161074210 - MSTA LTR MaLR 0 428 1 1919 156 35 20 chrX 1525720 1525927 -161074003 + L1MA7 LINE L1 6074 6291 0 813 147 27 7 chrX 1526399 1526549 -161073381 - L1MA4 LINE L1 -302 5998 5846 571 285 90 28 chrX 1526549 1526984 -161072946 + MER20B DNA MER1_type 292 753 -30 423 0 0 0 chrX 1527317 1527364 -161072566 + (TTA)n Simple_repeat Simple_repeat 2 48 0 1741 175 0 11 chrX 1527367 1527652 -161072278 - AluJo SINE Alu -30 282 1 908 181 68 0 chrX 1527951 1528128 -161071802 - MER5A DNA MER1_type 0 189 1 3403 146 50 2 chrX 1528278 1528853 -161071077 - LTR26 LTR ERV1 0 603 1 637 193 8 0 chrX 1530226 1530345 -161069585 - L1MC1 LINE L1 0 6333 6214 336 153 0 0 chrX 1530352 1530411 -161069519 + L1MC1 LINE L1 5791 5849 -484 503 153 23 17 chrX 1530528 1530705 -161069225 + (TA)n Simple_repeat Simple_repeat 1 178 0 1026 196 117 56 chrX 1530764 1531106 -161068824 + MLT1A1 LTR MaLR 1 363 -2 201 270 95 0 chrX 1532164 1532227 -161067703 + MIR SINE MIR 102 170 -92 23 0 0 0 chrX 1532514 1532537 -161067393 + AT_rich Low_complexity Low_complexity 1 23 0 4949 129 19 8 chrX 1532538 1533372 -161066558 - L1PA15 LINE L1 -2 6163 5321 2172 140 0 6 chrX 1533372 1533686 -161066244 - AluSx SINE Alu 0 312 1 21 36 0 0 chrX 1533763 1533791 -161066139 + AT_rich Low_complexity Low_complexity 1 28 0 1744 184 7 3 chrX 1535761 1536066 -161063864 + AluJo SINE Alu 1 306 -6 2342 83 0 93 chrX 1536872 1537269 -161062661 - L1PA14 LINE L1 -2 6159 5800 1357 91 0 0 chrX 1537269 1537466 -161062464 + L1PA14 LINE L1 5604 5800 -361 340 172 0 0 chrX 1538162 1538220 -161061710 + MER63 DNA MER1_type 688 745 -315 1706 105 201 10 chrX 1539095 1539408 -161060522 + THE1C LTR MaLR 3 375 0 996 133 0 0 chrX 1539504 1539684 -161060246 + (TA)n Simple_repeat Simple_repeat 1 180 0 1732 170 10 14 chrX 1539686 1539974 -161059956 - AluJo SINE Alu -25 287 1 1459 130 40 0 chrX 1540299 1540552 -161059378 + L1MA5A LINE L1 6029 6291 -6 337 202 0 21 chrX 1540643 1540737 -161059193 + GA-rich Low_complexity Low_complexity 1 92 0 305 250 15 0 chrX 1540984 1541052 -161058878 + MER5B DNA MER1_type 1 69 -109 284 197 0 13 chrX 1541099 1541175 -161058755 + GA-rich Low_complexity Low_complexity 2 76 0 484 262 17 17 chrX 1541219 1541391 -161058539 + L1ME LINE L1 5476 5647 -474 28 91 0 0 chrX 1541671 1541748 -161058182 + AT_rich Low_complexity Low_complexity 1 77 0 690 187 12 6 chrX 1542033 1542204 -161057726 + CT-rich Low_complexity Low_complexity 1 172 0 194 340 78 43 chrX 1543036 1543177 -161056753 + MIR SINE MIR 45 190 -72 284 217 14 0 chrX 1543711 1543780 -161056150 - MLT1J LTR MaLR -342 169 100 253 228 33 11 chrX 1544490 1544582 -161055348 + (TA)n Simple_repeat Simple_repeat 2 95 0 494 215 20 108 chrX 1544991 1545186 -161054744 + MER5B DNA MER1_type 1 178 0 464 269 14 28 chrX 1545471 1545612 -161054318 + MIR SINE MIR 68 206 -56 24 0 0 0 chrX 1546212 1546236 -161053694 + AT_rich Low_complexity Low_complexity 1 24 0 408 191 0 0 chrX 1546726 1546815 -161053115 + (ATG)n Simple_repeat Simple_repeat 3 91 0 240 314 98 49 chrX 1547065 1547329 -161052601 - L2 LINE L2 -674 2640 2364 207 0 0 0 chrX 1547721 1547744 -161052186 + (GA)n Simple_repeat Simple_repeat 1 23 0 260 242 99 11 chrX 1549018 1549109 -161050821 - L2 LINE L2 -7 3306 3208 352 309 80 19 chrX 1550518 1550680 -161049250 - MIR SINE MIR -3 259 88 385 253 138 23 chrX 1550920 1551094 -161048836 + MLT1C LTR MaLR 1 194 -311 1007 77 0 0 chrX 1551096 1551226 -161048704 + AluSp/q SINE Alu 176 305 -8 413 174 114 8 chrX 1551253 1551385 -161048545 + MLT1C LTR MaLR 200 345 -122 1238 224 72 34 chrX 1551394 1551840 -161048090 + MLT1C LTR MaLR 5 467 0 1728 167 7 0 chrX 1552119 1552394 -161047536 - AluJo SINE Alu -16 296 20 1137 202 118 43 chrX 1552905 1553320 -161046610 - MLT1C LTR MaLR 0 467 22 662 221 159 22 chrX 1553350 1553626 -161046304 - MLT1D LTR MaLR -144 361 48 24 32 0 0 chrX 1553726 1553757 -161046173 + AT_rich Low_complexity Low_complexity 1 31 0 912 154 15 0 chrX 1553762 1553898 -161046032 - FRAM SINE Alu -30 146 9 1026 201 19 0 chrX 1554378 1554592 -161045338 + MER20 DNA MER1_type 1 218 -1 1218 104 41 2 chrX 1554623 1555093 -161044837 + (TCTA)n Simple_repeat Simple_repeat 1 488 0 428 172 48 0 chrX 1555106 1555251 -161044679 + (TCTA)n Simple_repeat Simple_repeat 2 153 0 313 102 60 54 chrX 1555263 1555429 -161044501 + (TCTA)n Simple_repeat Simple_repeat 4 170 0 933 194 37 23 chrX 1555479 1555695 -161044235 + MER20 DNA MER1_type 1 219 0 21 0 0 0 chrX 1556755 1556776 -161043154 + AT_rich Low_complexity Low_complexity 1 21 0 22 0 0 0 chrX 1556814 1556836 -161043094 + AT_rich Low_complexity Low_complexity 1 22 0 25 31 0 0 chrX 1556882 1556914 -161043016 + AT_rich Low_complexity Low_complexity 1 32 0 21 0 0 0 chrX 1556980 1557001 -161042929 + AT_rich Low_complexity Low_complexity 1 21 0 1593 199 3 32 chrX 1560366 1560678 -161039252 - AluJo SINE Alu -8 304 2 2315 105 0 0 chrX 1561065 1561369 -161038561 - AluSx SINE Alu -8 304 1 1012 203 38 5 chrX 1562045 1562257 -161037673 - MER20 DNA MER1_type 0 219 1 439 206 6 40 chrX 1562259 1562434 -161037496 + (TAGA)n Simple_repeat Simple_repeat 4 172 0 959 199 37 28 chrX 1562455 1562671 -161037259 - MER20 DNA MER1_type -1 218 1 487 187 6 42 chrX 1562673 1562839 -161037091 + (TAGA)n Simple_repeat Simple_repeat 4 163 0 723 240 0 44 chrX 1562860 1563089 -161036841 - MER20 DNA MER1_type 0 219 1 858 43 43 7 chrX 1563091 1563231 -161036699 + (TAGA)n Simple_repeat Simple_repeat 4 148 0 923 216 32 28 chrX 1563247 1563465 -161036465 - MER20 DNA MER1_type 0 219 1 2034 34 4 4 chrX 1563886 1564173 -161035757 + AluY SINE Alu 45 331 0 1598 158 37 4 chrX 1564182 1564307 -161035623 + AluJo SINE Alu 1 120 -192 195 42 0 0 chrX 1564307 1564331 -161035599 + (TAA)n Simple_repeat Simple_repeat 1 24 0 1598 158 37 4 chrX 1564331 1564478 -161035452 + AluJo SINE Alu 120 282 -30 23 24 0 24 chrX 1564483 1564501 -161035429 + AT_rich Low_complexity Low_complexity 1 18 -22 2147 99 3 0 chrX 1564501 1564785 -161035145 - AluSx SINE Alu -27 285 1 23 24 0 24 chrX 1564785 1564807 -161035123 + AT_rich Low_complexity Low_complexity 18 40 0 1532 181 68 14 chrX 1565963 1566256 -161033674 - AluJo SINE Alu -3 309 1 4061 152 32 41 chrX 1566266 1567042 -161032888 + L1MA8 LINE L1 5404 6172 -119 1401 126 13 26 chrX 1567426 1567656 -161032274 + L1PA16 LINE L1 5940 6166 0 341 178 29 11 chrX 1573309 1573483 -161026447 + (TA)n Simple_repeat Simple_repeat 2 178 0 346 179 64 6 chrX 1573593 1573749 -161026181 + (TA)n Simple_repeat Simple_repeat 2 166 0 37 0 0 0 chrX 1573753 1573790 -161026140 + AT_rich Low_complexity Low_complexity 1 37 0 663 127 35 0 chrX 1573790 1573963 -161025967 + (TA)n Simple_repeat Simple_repeat 1 179 0 41 0 0 0 chrX 1573963 1574004 -161025926 + AT_rich Low_complexity Low_complexity 1 41 0 200 198 25 8 chrX 1574010 1574131 -161025799 + (TA)n Simple_repeat Simple_repeat 1 123 0 30 27 0 0 chrX 1574173 1574210 -161025720 + AT_rich Low_complexity Low_complexity 1 37 0 448 233 28 6 chrX 1574228 1574404 -161025526 + (TA)n Simple_repeat Simple_repeat 1 180 0 333 355 55 22 chrX 1574455 1574816 -161025114 + L2 LINE L2 2002 2374 -940 207 170 0 0 chrX 1575107 1575154 -161024776 + (CA)n Simple_repeat Simple_repeat 2 48 0 1884 204 77 33 chrX 1575157 1575676 -161024254 + LTR64 LTR ERVK 1 542 -16 273 333 0 0 chrX 1575677 1575761 -161024169 + (CA)n Simple_repeat Simple_repeat 1 84 0 225 289 56 44 chrX 1575862 1575952 -161023978 + MLT1I LTR MaLR 68 158 -251 197 383 39 22 chrX 1576037 1576217 -161023713 - L2 LINE L2 -312 3001 2819 410 181 16 16 chrX 1576558 1576685 -161023245 + GA-rich Low_complexity Low_complexity 1 127 0 936 122 6 11 chrX 1576685 1576865 -161023065 + (GGAA)n Simple_repeat Simple_repeat 1 179 0 1028 145 14 5 chrX 1576867 1577086 -161022844 + GA-rich Low_complexity Low_complexity 1 216 -226 1028 101 17 11 chrX 1577086 1577265 -161022665 + (GGAA)n Simple_repeat Simple_repeat 1 180 0 1028 145 14 5 chrX 1577265 1577305 -161022625 + GA-rich Low_complexity Low_complexity 216 442 0 234 91 0 0 chrX 1578589 1578622 -161021308 + (TAA)n Simple_repeat Simple_repeat 2 34 0 1574 172 19 23 chrX 1578707 1579015 -161020915 - AluJb SINE Alu -5 307 1 2541 46 3 0 chrX 1580051 1580353 -161019577 - AluY SINE Alu -8 303 1 2171 147 0 0 chrX 1580830 1581142 -161018788 + AluJb SINE Alu 1 312 0 1826 166 0 0 chrX 1581810 1582087 -161017843 - AluJb SINE Alu -31 281 5 2401 85 0 13 chrX 1582990 1583306 -161016624 - AluSx SINE Alu 0 312 1 1597 209 19 28 chrX 1583638 1583732 -161016198 + L1MB5 LINE L1 5810 5903 -271 3590 124 15 11 chrX 1583732 1584257 -161015673 + MER1A DNA MER1_type 1 527 0 1597 209 19 28 chrX 1584257 1584521 -161015409 + L1MB5 LINE L1 5903 6165 -9 308 306 10 0 chrX 1585147 1585245 -161014685 + MER20 DNA MER1_type 121 219 0 327 167 40 35 chrX 1585260 1585434 -161014496 + (TCTA)n Simple_repeat Simple_repeat 3 177 0 185 351 90 13 chrX 1585434 1585821 -161014109 - L2 LINE L2 -593 2721 2305 389 286 11 0 chrX 1586047 1586138 -161013792 - MER20 DNA MER1_type -127 92 1 788 108 44 23 chrX 1586141 1586574 -161013356 + (TAGA)n Simple_repeat Simple_repeat 1 442 0 725 107 34 28 chrX 1586635 1586812 -161013118 + (TAGA)n Simple_repeat Simple_repeat 3 180 0 185 0 40 0 chrX 1587050 1587075 -161012855 + (TTG)n Simple_repeat Simple_repeat 2 27 0 2396 68 0 7 chrX 1587078 1587373 -161012557 - AluY SINE Alu -16 295 3 446 60 107 13 chrX 1588764 1589069 -161010861 + (TA)n Simple_repeat Simple_repeat 1 333 0 22 0 0 0 chrX 1589073 1589095 -161010835 + AT_rich Low_complexity Low_complexity 1 22 0 482 30 129 5 chrX 1589095 1589472 -161010458 + (TA)n Simple_repeat Simple_repeat 1 423 0 39 22 0 0 chrX 1589476 1589522 -161010408 + AT_rich Low_complexity Low_complexity 1 46 0 2617 101 64 3 chrX 1589797 1590185 -161009745 + L1PA8A LINE L1 5720 6131 0 304 22 22 22 chrX 1591957 1592003 -161007927 + (GA)n Simple_repeat Simple_repeat 2 47 0 24 0 0 0 chrX 1592021 1592045 -161007885 + AT_rich Low_complexity Low_complexity 1 24 0 2354 74 7 3 chrX 1592641 1592766 -161007164 + AluSp SINE Alu 1 124 -189 189 0 0 0 chrX 1592766 1592787 -161007143 + (CAAA)n Simple_repeat Simple_repeat 4 24 0 2354 74 7 3 chrX 1592787 1592960 -161006970 + AluSp SINE Alu 124 300 -13 224 316 0 0 chrX 1593802 1593859 -161006071 + G-rich Low_complexity Low_complexity 3 59 0 276 77 0 0 chrX 1595627 1595666 -161004264 + (TATG)n Simple_repeat Simple_repeat 2 40 0 1664 163 7 3 chrX 1595666 1595948 -161003982 - AluSx SINE Alu -28 284 2 198 0 0 0 chrX 1597002 1597024 -161002906 + (TGAA)n Simple_repeat Simple_repeat 1 22 0 1831 157 0 20 chrX 1597068 1597368 -161002562 + AluJb SINE Alu 1 294 -18 749 216 22 11 chrX 1597655 1597840 -161002090 + L1MB5 LINE L1 5980 6166 -8 315 0 0 0 chrX 1598479 1598514 -161001416 + (TA)n Simple_repeat Simple_repeat 2 36 0 2000 142 0 0 chrX 1600137 1600419 -160999511 - AluSx SINE Alu -30 282 1 1026 191 32 18 chrX 1600519 1600739 -160999191 + L1MC1 LINE L1 6111 6333 0 3212 134 43 19 chrX 1600990 1601505 -160998425 - MER1A DNA MER1_type 0 527 1 1289 221 62 9 chrX 1602183 1602523 -160997407 - MLT1C LTR MaLR 0 467 110 1760 214 43 53 chrX 1602532 1603018 -160996912 + MLT1D LTR MaLR 25 505 0 228 187 0 28 chrX 1603296 1603403 -160996527 + (TTA)n Simple_repeat Simple_repeat 3 106 0 2232 99 0 17 chrX 1603960 1604252 -160995678 - AluSg SINE Alu -23 287 1 1837 184 16 72 chrX 1604336 1604411 -160995519 - L1MB5 LINE L1 -9 6165 6087 3546 140 0 19 chrX 1604411 1604948 -160994982 - MER1A DNA MER1_type 0 527 1 1837 184 16 72 chrX 1604948 1605317 -160994613 - L1MB5 LINE L1 -87 6087 5746 2334 100 0 3 chrX 1605347 1605646 -160994284 - AluSx SINE Alu -14 298 1 223 216 54 0 chrX 1605908 1605982 -160993948 + (TCTA)n Simple_repeat Simple_repeat 1 78 0 3671 125 4 9 chrX 1606034 1606563 -160993367 + MER1A DNA MER1_type 2 527 0 191 155 42 14 chrX 1606564 1606635 -160993295 + (TCTA)n Simple_repeat Simple_repeat 4 76 0 241 236 9 109 chrX 1607268 1607306 -160992624 - MLT1J LTR MaLR -183 328 288 2102 130 10 0 chrX 1607306 1607607 -160992323 + AluSx SINE Alu 1 304 -8 241 236 9 109 chrX 1607607 1607678 -160992252 - MLT1J LTR MaLR -223 288 230 882 234 84 96 chrX 1607814 1608314 -160991616 - MLT1D LTR MaLR -11 494 1 4750 118 34 71 chrX 1608374 1609187 -160990743 - LTR1 LTR ERV1 0 785 3 1893 108 82 0 chrX 1609332 1609601 -160990329 - AluSx SINE Alu -21 291 1 4167 151 39 3 chrX 1609720 1609974 -160989956 + L1PB4 LINE L1 5434 5677 -479 2177 111 0 0 chrX 1609974 1610271 -160989659 + AluSx SINE Alu 1 297 -15 4167 151 39 3 chrX 1610271 1610707 -160989223 + L1PB4 LINE L1 5677 6149 -7 247 336 17 8 chrX 1610979 1611098 -160988832 + MER117 DNA MER1_type 44 163 -34 2584 105 11 3 chrX 1611174 1611526 -160988404 - THE1A LTR MaLR 0 355 1 1975 148 0 0 chrX 1611758 1612069 -160987861 - AluJo SINE Alu 0 311 1 26 50 0 0 chrX 1612205 1612245 -160987685 + AT_rich Low_complexity Low_complexity 1 40 0 233 188 68 23 chrX 1612252 1612385 -160987545 + (TA)n Simple_repeat Simple_repeat 2 140 0 * 308 240 29 29 chrX 1612353 1612392 -160987538 + (TTATA)n Simple_repeat Simple_repeat 1 39 -459 1916 109 64 0 chrX 1612392 1612658 -160987272 + AluSg SINE Alu 8 290 -20 308 240 29 29 chrX 1612658 1612851 -160987079 + (TTATA)n Simple_repeat Simple_repeat 38 498 0 23 33 0 0 chrX 1612864 1612894 -160987036 + AT_rich Low_complexity Low_complexity 1 30 0 333 261 9 9 chrX 1613305 1613416 -160986514 - LTR16C LTR ERVL -10 481 371 636 178 7 105 chrX 1613875 1614027 -160985903 - MLT1C LTR MaLR -2 503 367 379 162 15 0 chrX 1614027 1614095 -160985835 + L1PA16 LINE L1 6086 6154 -12 535 305 24 6 chrX 1614307 1614471 -160985459 - MLT1C LTR MaLR -148 478 312 1923 117 0 55 chrX 1616416 1616725 -160983205 - AluSx SINE Alu -20 292 1 274 229 0 0 chrX 1616753 1616814 -160983116 - MLT1E2 LTR MaLR -25 601 541 1334 133 0 0 chrX 1616829 1617024 -160982906 - L1MA2 LINE L1 -2 6302 6108 920 250 41 35 chrX 1617033 1617349 -160982581 - MLT1C LTR MaLR -149 318 1 764 236 94 34 chrX 1617356 1617623 -160982307 - MLT1C LTR MaLR -119 348 66 1809 141 7 11 chrX 1618093 1618412 -160981518 + AluJb SINE Alu 1 318 0 254 322 110 44 chrX 1619136 1619363 -160980567 - L3 LINE CR1 -81 1496 1255 1905 180 17 6 chrX 1619454 1619815 -160980115 + MLT1A1 LTR MaLR 1 365 0 704 222 20 7 chrX 1619885 1620038 -160979892 + MLT1A1 LTR MaLR 211 365 0 1048 270 118 3 chrX 1620303 1620625 -160979305 + MLT1D LTR MaLR 135 493 -12 286 273 268 17 chrX 1620676 1620907 -160979023 + L2 LINE L2 2926 3214 -99 198 0 0 0 chrX 1620934 1620956 -160978974 + (TTAGGG)n Simple_repeat Simple_repeat 2 23 0 2667 85 48 20 chrX 1621190 1621544 -160978386 - THE1B LTR MaLR 0 364 1 300 318 30 15 chrX 1621607 1621739 -160978191 - MER5B DNA MER1_type -18 160 27 226 337 20 20 chrX 1622669 1622770 -160977160 + MER5B DNA MER1_type 55 155 -23 320 88 18 0 chrX 1623057 1623114 -160976816 + (CCCTAA)n Simple_repeat Simple_repeat 2 59 0 212 288 134 40 chrX 1623231 1623417 -160976513 - L2 LINE L2 -217 3096 2879 214 244 0 0 chrX 1623689 1623730 -160976200 + polypyrimidine Low_complexity Low_complexity 2 42 0 1029 208 5 15 chrX 1623809 1624011 -160975919 - MLT1D LTR MaLR 0 505 306 3414 128 78 15 chrX 1624014 1624601 -160975329 + MER4B LTR ERV1 1 606 -4 595 263 53 70 chrX 1624608 1624893 -160975037 - MLT1D LTR MaLR -202 303 24 2174 114 0 3 chrX 1625017 1625314 -160974616 + AluSx SINE Alu 1 296 -16 26 0 0 0 chrX 1625322 1625348 -160974582 + AT_rich Low_complexity Low_complexity 1 26 0 915 183 0 0 chrX 1625397 1625577 -160974353 + (TG)n Simple_repeat Simple_repeat 1 180 0 737 212 6 0 chrX 1625588 1625767 -160974163 + (TG)n Simple_repeat Simple_repeat 1 180 0 1371 214 66 84 chrX 1626760 1627314 -160972616 - MLT1F1 LTR MaLR -7 560 14 1063 187 24 3 chrX 1627371 1627636 -160972294 + L1P5 LINE L1 5196 5470 -686 296 139 0 0 chrX 1627636 1627679 -160972251 - Alu SINE Alu -11 289 247 1731 194 7 0 chrX 1628170 1628469 -160971461 + AluJo SINE Alu 1 301 -11 1880 118 19 166 chrX 1628881 1629062 -160970868 + Tigger2 DNA MER2_type 2 208 -2510 2436 77 0 7 chrX 1629062 1629361 -160970569 + AluY SINE Alu 1 297 -14 1880 118 19 166 chrX 1629361 1629481 -160970449 + Tigger2 DNA MER2_type 208 344 -2374 2122 124 20 0 chrX 1629481 1629779 -160970151 + AluSx SINE Alu 1 304 -8 1880 118 19 166 chrX 1629779 1629906 -160970024 + Tigger2 DNA MER2_type 344 488 -2230 1813 165 3 7 chrX 1629906 1630203 -160969727 - AluSx SINE Alu -16 296 1 1880 118 19 166 chrX 1630203 1630278 -160969652 + Tigger2 DNA MER2_type 488 2718 0 188 250 10 0 chrX 1630278 1630374 -160969556 + (TA)n Simple_repeat Simple_repeat 2 98 0 535 222 6 6 chrX 1630393 1630573 -160969357 + (TA)n Simple_repeat Simple_repeat 1 180 0 272 263 25 0 chrX 1630573 1630653 -160969277 + (CATATA)n Simple_repeat Simple_repeat 2 83 0 1810 210 2 20 chrX 1630658 1631033 -160968897 - MLT2D LTR ERVL -43 477 7 3717 189 81 11 chrX 1631322 1632054 -160967876 + LTR39 LTR ERV1 1 783 0 257 216 0 27 chrX 1632545 1632619 -160967311 + (TATATG)n Simple_repeat Simple_repeat 3 74 0 219 146 0 0 chrX 1632818 1632859 -160967071 + (CATA)n Simple_repeat Simple_repeat 3 43 0 218 141 65 11 chrX 1632898 1632990 -160966940 + (TAGA)n Simple_repeat Simple_repeat 2 98 0 568 162 50 7 chrX 1633029 1633761 -160966169 + (TAGA)n Simple_repeat Simple_repeat 1 763 0 243 141 47 0 chrX 1633949 1634013 -160965917 + (TCTA)n Simple_repeat Simple_repeat 3 69 0 2001 133 7 17 chrX 1634606 1634907 -160965023 - AluSx SINE Alu -14 298 1 518 227 60 38 chrX 1634957 1635142 -160964788 - MER53 DNA DNA 0 189 1 915 192 2 0 chrX 1635224 1635685 -160964245 + (TG)n Simple_repeat Simple_repeat 1 462 0 476 165 49 13 chrX 1635709 1636100 -160963830 + (TCTA)n Simple_repeat Simple_repeat 1 405 0 198 103 0 0 chrX 1636139 1636168 -160963762 + (TATG)n Simple_repeat Simple_repeat 3 31 0 448 211 21 11 chrX 1637773 1637868 -160962062 - MER5A DNA MER1_type -80 109 14 378 78 0 0 chrX 1638270 1638321 -160961609 + Alu SINE Alu 1 51 -250 3356 129 20 2 chrX 1638322 1638817 -160961113 + MER1A DNA MER1_type 26 529 0 1903 151 20 0 chrX 1638960 1639252 -160960678 - AluJb SINE Alu -14 298 1 2433 92 3 0 chrX 1639536 1639842 -160960088 + AluSp SINE Alu 6 312 -1 3027 115 18 29 chrX 1640484 1640935 -160958995 + L1PA16 LINE L1 5712 6157 -9 203 317 49 12 chrX 1641134 1641216 -160958714 + MIR SINE MIR 7 91 -171 258 56 0 0 chrX 1642041 1642077 -160957853 + (TG)n Simple_repeat Simple_repeat 2 37 0 2755 132 2 76 chrX 1642332 1642377 -160957553 + MSTC LTR MaLR 1 48 -380 1692 164 7 18 chrX 1642377 1642658 -160957272 + AluJo SINE Alu 5 282 -30 2755 132 2 76 chrX 1642658 1642678 -160957252 + MSTC LTR MaLR 48 68 -360 183 42 0 0 chrX 1642678 1642702 -160957228 + (CAAA)n Simple_repeat Simple_repeat 2 25 0 2755 132 2 76 chrX 1642702 1643097 -160956833 + MSTC LTR MaLR 68 428 0 22 56 0 0 chrX 1643109 1643145 -160956785 + AT_rich Low_complexity Low_complexity 1 36 0 1564 170 0 53 chrX 1643228 1643528 -160956402 - AluJo SINE Alu -19 293 10 2675 115 66 17 chrX 1644050 1644458 -160955472 - MSTA LTR MaLR 0 428 1 4105 142 3 14 chrX 1644692 1645331 -160954599 - L1PB4 LINE L1 -2 6154 5523 2474 137 3 7 chrX 1645536 1645928 -160954002 + MLT1B LTR MaLR 1 467 0 1385 164 4 0 chrX 1645929 1646160 -160953770 + MLT1B LTR MaLR 159 390 0 2687 69 33 3 chrX 1646502 1646864 -160953066 + MER41A LTR ERV1 1 373 -181 988 109 0 0 chrX 1646855 1646993 -160952937 + MER41B LTR ERV1 498 635 0 * 1963 107 0 18 chrX 1648076 1648357 -160951573 + MER4E LTR ERV1 1 276 -503 2521 85 3 23 chrX 1648363 1648715 -160951215 + MER4E LTR ERV1 435 779 0 1316 98 0 6 chrX 1648900 1649073 -160950857 - LTR8 LTR ERV1 0 691 520 593 197 88 0 chrX 1649079 1649216 -160950714 - L1MA10 LINE L1 -7 6327 6179 642 121 0 0 chrX 1649222 1649305 -160950625 - AluSg/x SINE Alu -14 296 214 2330 180 21 87 chrX 1649306 1649879 -160950051 - LTR8 LTR ERV1 -156 535 1 431 301 59 34 chrX 1649989 1650225 -160949705 + L2 LINE L2 2113 2354 -960 2184 195 47 0 chrX 1650226 1650631 -160949299 + MSTB1 LTR MaLR 9 432 0 303 28 0 0 chrX 1650876 1650912 -160949018 + (TTTA)n Simple_repeat Simple_repeat 2 37 0 2100 72 0 15 chrX 1650923 1651187 -160948743 - AluSq SINE Alu -36 277 18 293 312 32 19 chrX 1651449 1651606 -160948324 + L2 LINE L2 3113 3271 -42 27 0 0 0 chrX 1653936 1653963 -160945967 + AT_rich Low_complexity Low_complexity 1 27 0 241 202 11 45 chrX 1654050 1654139 -160945791 - L1MC4 LINE L1 -1342 6700 6615 2246 155 31 0 chrX 1654173 1654527 -160945403 + MLT1A1 LTR MaLR 1 365 0 283 192 0 0 chrX 1655694 1655746 -160944184 - MLT1B LTR MaLR 0 390 339 24 0 0 0 chrX 1855859 1855883 -160744047 + AT_rich Low_complexity Low_complexity 1 24 0 659 114 20 7 chrX 1856123 1856272 -160743658 + (TG)n Simple_repeat Simple_repeat 2 152 0 592 250 111 34 chrX 1856579 1856787 -160743143 - MER58A DNA MER1_type 0 224 1 1700 175 6 16 chrX 1856862 1857176 -160742754 - AluJo SINE Alu -1 311 1 2161 95 11 0 chrX 1857765 1858049 -160741881 - AluSx SINE Alu -17 295 9 2916 157 15 26 chrX 1858058 1858429 -160741501 - L1PB4 LINE L1 -117 6039 5674 1885 128 3 34 chrX 1858429 1858725 -160741205 - AluSx SINE Alu -23 289 3 2916 157 15 26 chrX 1858725 1858900 -160741030 - L1PB4 LINE L1 -482 5674 5499 1597 181 0 11 chrX 1859107 1859389 -160740541 - AluJo SINE Alu -10 302 24 24 53 0 0 chrX 1859425 1859463 -160740467 + AT_rich Low_complexity Low_complexity 1 38 0 680 326 107 32 chrX 1859504 1860180 -160739750 + L2 LINE L2 2584 3309 -4 21 36 0 0 chrX 1860187 1860215 -160739715 + AT_rich Low_complexity Low_complexity 1 28 0 1380 239 48 58 chrX 1860365 1860498 -160739432 + MLT1D LTR MaLR 27 160 -345 185 65 32 0 chrX 1860498 1860529 -160739401 + (TTTA)n Simple_repeat Simple_repeat 1 32 0 2012 137 0 0 chrX 1860529 1860807 -160739123 - AluSx SINE Alu -32 280 3 1380 239 48 58 chrX 1860807 1860901 -160739029 + MLT1D LTR MaLR 159 252 -253 2628 98 5 11 chrX 1860901 1861278 -160738652 - THE1C LTR MaLR 0 375 1 1380 239 48 58 chrX 1861278 1861530 -160738400 + MLT1D LTR MaLR 252 503 -2 1834 178 3 7 chrX 1861534 1861832 -160738098 - AluJo SINE Alu -15 297 1 2157 129 0 0 chrX 1862396 1862698 -160737232 - AluSx SINE Alu -10 302 1 2019 207 130 2 chrX 1862785 1863230 -160736700 - MLT2B1 LTR ERVL -15 505 4 1018 238 5 0 chrX 1863457 1863667 -160736263 - MER20 DNA MER1_type -1 218 8 287 314 10 10 chrX 1863976 1864078 -160735852 + GA-rich Low_complexity Low_complexity 2 103 0 231 59 39 20 chrX 1864213 1864264 -160735666 + (CAAAAA)n Simple_repeat Simple_repeat 3 54 0 2215 115 0 3 chrX 1864897 1865202 -160734728 - AluSx SINE Alu -8 304 1 1093 229 30 30 chrX 1866152 1866454 -160733476 + MLT2C1 LTR ERVL 5 306 -91 790 157 19 12 chrX 1866491 1866751 -160733179 + (TAGA)n Simple_repeat Simple_repeat 1 261 0 305 96 0 39 chrX 1866777 1866829 -160733101 + MLT2C1 LTR ERVL 465 514 -6 245 151 19 0 chrX 1868046 1868099 -160731831 + (TA)n Simple_repeat Simple_repeat 1 54 0 23 33 0 0 chrX 1868185 1868215 -160731715 + AT_rich Low_complexity Low_complexity 1 30 0 2010 129 7 13 chrX 1868696 1868999 -160730931 + AluSx SINE Alu 2 302 -10 369 287 100 31 chrX 1869251 1869610 -160730320 + LTR16A LTR ERVL 51 438 -12 639 165 0 0 chrX 1869700 1869809 -160730121 - FRAM SINE Alu -5 171 63 2084 174 7 68 chrX 1869810 1870252 -160729678 + LTR9 LTR ERV1 1 415 -197 1426 149 0 28 chrX 1870358 1870613 -160729317 - L1MB3 LINE L1 -224 5959 5712 828 188 35 15 chrX 1870610 1870807 -160729123 + L1 LINE L1 4952 5152 -994 * 2095 141 7 0 chrX 1871492 1871796 -160728134 - AluSx SINE Alu -6 306 1 1291 176 231 50 chrX 1871847 1872412 -160727518 - LTR48 LTR ERV1 0 644 33 2026 137 0 7 chrX 1872412 1872704 -160727226 - AluSx SINE Alu -22 290 1 1291 176 231 50 chrX 1872704 1872745 -160727185 - LTR48 LTR ERV1 -611 33 1 26 30 0 0 chrX 1873300 1873333 -160726597 + AT_rich Low_complexity Low_complexity 1 33 0 23 33 0 0 chrX 1873761 1873791 -160726139 + AT_rich Low_complexity Low_complexity 1 30 0 1880 130 89 11 chrX 1874008 1874355 -160725575 + THE1C LTR MaLR 2 375 0 833 119 0 0 chrX 1874467 1874593 -160725337 + L1MA2 LINE L1 6173 6298 -6 22 0 0 0 chrX 1875372 1875394 -160724536 + AT_rich Low_complexity Low_complexity 1 22 0 27 0 0 0 chrX 1875550 1875577 -160724353 + AT_rich Low_complexity Low_complexity 1 27 0 1188 259 62 109 chrX 1875904 1876635 -160723295 - L1ME1 LINE L1 -90 6076 5381 478 79 13 71 chrX 1876651 1876894 -160723036 + (TA)n Simple_repeat Simple_repeat 1 228 0 1236 217 14 7 chrX 1876903 1877179 -160722751 - AluSx SINE Alu -34 278 1 588 206 9 75 chrX 1877180 1877408 -160722522 - L1ME1 LINE L1 -748 5398 5186 1779 162 0 11 chrX 1877512 1877820 -160722110 + AluSx SINE Alu 1 305 0 395 285 20 0 chrX 1878874 1879025 -160720905 + (TA)n Simple_repeat Simple_repeat 1 154 0 345 160 28 0 chrX 1879090 1879196 -160720734 + (TA)n Simple_repeat Simple_repeat 1 109 0 446 228 7 14 chrX 1879239 1879539 -160720391 + (TA)n Simple_repeat Simple_repeat 1 297 0 512 212 15 11 chrX 1879553 1879819 -160720111 + (TA)n Simple_repeat Simple_repeat 1 267 0 22 0 0 0 chrX 1880816 1880838 -160719092 + AT_rich Low_complexity Low_complexity 1 22 0 2751 163 19 67 chrX 1880838 1881295 -160718635 - L1MA8 LINE L1 -4 6287 5868 2093 122 23 0 chrX 1881295 1881598 -160718332 - AluSx SINE Alu -2 310 1 2751 163 19 67 chrX 1881598 1881780 -160718150 - L1MA8 LINE L1 -423 5868 5679 260 98 49 0 chrX 1882552 1882593 -160717337 - MER116 DNA Mariner -2 78 36 635 104 104 75 chrX 1883234 1883325 -160716605 - L1MA7 LINE L1 -4 6287 6200 1728 159 52 0 chrX 1883325 1883445 -160716485 + AluSx SINE Alu 1 113 -218 366 23 0 0 chrX 1883445 1883488 -160716442 + (CA)n Simple_repeat Simple_repeat 2 44 0 1728 159 52 0 chrX 1883488 1883684 -160716246 + AluSx SINE Alu 113 331 0 635 104 104 75 chrX 1883684 1883764 -160716166 - L1MA7 LINE L1 -91 6200 6110 511 113 0 0 chrX 1883934 1884014 -160715916 + MADE1 DNA Mariner 1 80 0 1089 197 0 0 chrX 1884621 1884819 -160715111 - AluJb SINE Alu -25 287 90 2218 93 7 0 chrX 1884872 1885162 -160714768 + AluSx SINE Alu 1 292 -20 491 174 0 1 chrX 1885213 1885307 -160714623 + L1MA6 LINE L1 6023 6115 -185 2584 146 19 60 chrX 1885506 1885546 -160714384 - L1MA9 LINE L1 -22 6290 6250 1695 86 0 13 chrX 1885546 1885779 -160714151 + MER30 DNA MER1_type 1 230 0 2584 146 19 60 chrX 1885779 1886259 -160713671 - L1MA9 LINE L1 -62 6250 5791 1032 103 0 0 chrX 1886476 1886621 -160713309 + L1MC1 LINE L1 6034 6178 -155 374 21 21 0 chrX 1886623 1886670 -160713260 + L1MC1 LINE L1 6275 6322 -11 1865 137 0 46 chrX 1886673 1886979 -160712951 + AluJo SINE Alu 3 294 -18 32 57 0 0 chrX 1886985 1887038 -160712892 + AT_rich Low_complexity Low_complexity 1 53 0 1458 187 14 18 chrX 1888166 1888502 -160711428 + AluJo SINE Alu 1 335 0 236 309 10 21 chrX 1888518 1888615 -160711315 + L1MC4 LINE L1 7924 8019 -23 438 313 117 20 chrX 1888695 1889047 -160710883 + L1ME3A LINE L1 5505 5890 -280 328 348 22 47 chrX 1889137 1889459 -160710471 - ERVL LTR ERVL -3967 1797 1484 917 202 6 14 chrX 1889496 1889711 -160710219 + L1MA8 LINE L1 5741 5949 -231 441 298 28 23 chrX 1890470 1890685 -160709245 + L1ME3A LINE L1 5691 5906 -264 240 86 0 0 chrX 1890903 1890938 -160708992 + (TCCA)n Simple_repeat Simple_repeat 3 37 0 346 73 94 10 chrX 1890938 1891034 -160708896 + (TAGA)n Simple_repeat Simple_repeat 1 104 0 6910 59 0 0 chrX 1891307 1892799 -160707131 - L1PA6 LINE L1 0 6154 4650 1095 161 44 5 chrX 1894264 1894467 -160705463 - MLT1B LTR MaLR 0 390 180 1897 193 11 8 chrX 1894467 1894854 -160705076 - MLT1B LTR MaLR -3 393 1 2554 154 43 4 chrX 1894938 1895404 -160704526 - MER31A LTR ERV1 0 485 2 31 58 0 0 chrX 1896298 1896350 -160703580 + AT_rich Low_complexity Low_complexity 1 52 0 869 191 13 93 chrX 1896911 1897147 -160702783 + MER20 DNA MER1_type 2 218 -1 312 253 13 0 chrX 1897181 1897260 -160702670 - L1ME2 LINE L1 -9 6155 6076 1642 212 0 0 chrX 1897260 1897566 -160702364 + AluJo SINE Alu 2 307 0 257 324 15 0 chrX 1897567 1897635 -160702295 + HERV16 LTR ERVL 1753 1821 -3175 323 268 9 71 chrX 1897697 1897809 -160702121 + AluJo SINE Alu 58 162 -140 516 95 0 0 chrX 1897978 1898062 -160701868 + (TA)n Simple_repeat Simple_repeat 2 85 0 1645 202 22 0 chrX 1898147 1898459 -160701471 + LTR57 LTR ERVL 91 409 -2 339 324 61 0 chrX 1898467 1898615 -160701315 + HERV16 LTR ERVL 1237 1393 -3603 4475 194 30 17 chrX 1898619 1900310 -160699620 + L1MA9 LINE L1 4525 6233 -79 2392 131 3 3 chrX 1900310 1900662 -160699268 + THE1B LTR MaLR 1 352 -12 232 299 0 0 chrX 1900688 1900775 -160699155 + L1MC4 LINE L1 6614 6700 -1342 4396 141 15 14 chrX 1901271 1901987 -160697943 + LTR62 LTR ERVK 1 717 -2 271 190 63 0 chrX 1902204 1902283 -160697647 + L1M4 LINE L1 2329 2412 -3734 1109 205 26 26 chrX 1903354 1903583 -160696347 + Tigger5 DNA MER2_type 2 230 -2093 1130 185 35 9 chrX 1903587 1903814 -160696116 + Tigger5 DNA MER2_type 2091 2323 0 236 91 23 0 chrX 1903878 1903922 -160696008 + (TG)n Simple_repeat Simple_repeat 2 46 0 24 96 0 0 chrX 1903991 1904064 -160695866 + AT_rich Low_complexity Low_complexity 1 73 0 1789 178 77 30 chrX 1904160 1904564 -160695366 + L1MA4 LINE L1 5878 6300 0 46 33 0 0 chrX 1904648 1904708 -160695222 + AT_rich Low_complexity Low_complexity 1 60 0 394 200 32 42 chrX 1905085 1905180 -160694750 + MIR SINE MIR 28 121 -141 2063 139 3 3 chrX 1905290 1905600 -160694330 - AluSx SINE Alu -2 310 1 217 318 85 23 chrX 1906301 1906430 -160693500 - MIR SINE MIR -67 195 59 3059 152 9 28 chrX 1907023 1907589 -160692341 - MER4B LTR ERV1 -55 555 1 197 374 22 11 chrX 1907649 1907740 -160692190 - MIR SINE MIR -150 112 21 3555 49 0 7 chrX 1907838 1908289 -160691641 + LTR7 LTR ERV1 1 448 -2 18853 91 30 7 chrX 1908291 1911209 -160688721 + HERVH LTR ERV1 1 2987 -4726 824 142 20 0 chrX 1911203 1911351 -160688579 + HERVH LTR ERV1 3140 3290 -4423 * 2357 134 7 14 chrX 1911341 1911775 -160688155 + HERVH LTR ERV1 3492 3922 -3791 3264 150 17 2 chrX 1912004 1912523 -160687407 - MER1A DNA MER1_type 0 527 1 2727 179 33 0 chrX 1913419 1913966 -160685964 + L1MB7 LINE L1 5617 6181 -3 21 57 0 0 chrX 1914012 1914047 -160685883 + AT_rich Low_complexity Low_complexity 1 35 0 30 0 0 0 chrX 1916034 1916064 -160683866 + AT_rich Low_complexity Low_complexity 1 30 0 4319 131 16 12 chrX 1916064 1916834 -160683096 - L1PB3 LINE L1 -1 6153 5381 31 0 0 0 chrX 1916918 1916949 -160682981 + AT_rich Low_complexity Low_complexity 1 31 0 29 0 0 0 chrX 1917511 1917540 -160682390 + AT_rich Low_complexity Low_complexity 1 29 0 911 43 0 0 chrX 1917884 1918001 -160681929 + L1PA4 LINE L1 6039 6155 0 1964 129 7 7 chrX 1919171 1919473 -160680457 + AluJb SINE Alu 1 302 -10 310 222 46 137 chrX 1921371 1921524 -160678406 + MER5B DNA MER1_type 2 140 -38 23 78 0 0 chrX 1922023 1922074 -160677856 + GC_rich Low_complexity Low_complexity 1 51 0 192 89 44 22 chrX 1922170 1922215 -160677715 + GA-rich Low_complexity Low_complexity 2 47 0 2034 165 33 31 chrX 1922321 1922869 -160677061 - MLT2A2 LTR ERVL -1 553 1 186 304 47 108 chrX 1922976 1923190 -160676740 + L2 LINE L2 2214 2414 -900 1477 192 35 3 chrX 1923200 1923539 -160676391 - L1MA9 LINE L1 -170 6142 5793 905 182 0 87 chrX 1923558 1923789 -160676141 + MER2 DNA MER2_type 1 211 -134 37 39 0 0 chrX 1923794 1923845 -160676085 + AT_rich Low_complexity Low_complexity 1 51 0 1001 179 0 0 chrX 1923895 1924079 -160675851 - L1MA9 LINE L1 -498 5793 5610 724 201 34 0 chrX 1924079 1924098 -160675832 + L1MA9 LINE L1 6128 6145 -167 186 43 0 0 chrX 1924098 1924121 -160675809 + (CA)n Simple_repeat Simple_repeat 2 24 0 724 201 34 0 chrX 1924121 1924277 -160675653 + L1MA9 LINE L1 6145 6312 0 333 314 47 35 chrX 1924470 1924642 -160675288 + L2 LINE L2 2619 2792 -522 1992 116 18 3 chrX 1924781 1925066 -160674864 + AluSp SINE Alu 17 305 -8 21 0 0 0 chrX 1925651 1925672 -160674258 + AT_rich Low_complexity Low_complexity 1 21 0 2160 130 3 0 chrX 1925842 1926142 -160673788 + AluSx SINE Alu 1 301 -11 2125 115 0 3 chrX 1926146 1926434 -160673496 + AluSx SINE Alu 1 287 -25 27 62 0 0 chrX 1927384 1927432 -160672498 + AT_rich Low_complexity Low_complexity 1 48 0 25 51 0 0 chrX 1927891 1927930 -160672000 + AT_rich Low_complexity Low_complexity 1 39 0 390 176 0 0 chrX 1927981 1928049 -160671881 - L1M2 LINE L1 -614 5677 5610 2062 133 3 0 chrX 1928234 1928536 -160671394 + AluY SINE Alu 1 303 -8 429 282 46 24 chrX 1929228 1929459 -160670471 - L1MC4 LINE L1 -947 6946 6623 22 35 0 0 chrX 1929524 1929553 -160670377 + AT_rich Low_complexity Low_complexity 1 29 0 266 202 83 0 chrX 1929556 1929640 -160670290 - L1MA9 LINE L1 -24 6288 6198 1995 146 3 0 chrX 1930376 1930664 -160669266 + AluSx SINE Alu 1 289 -23 1700 212 68 27 chrX 1930665 1931103 -160668827 - MLT2B1 LTR ERVL -64 456 1 234 284 83 46 chrX 1932136 1932318 -160667612 - MIR SINE MIR -60 202 16 23 0 0 0 chrX 1932553 1932576 -160667354 + AT_rich Low_complexity Low_complexity 1 23 0 223 150 50 12 chrX 1932603 1932683 -160667247 + GA-rich Low_complexity Low_complexity 1 83 0 2506 125 9 35 chrX 1933640 1934072 -160665858 + MER4B LTR ERV1 1 421 -189 3503 49 2 7 chrX 1934072 1934521 -160665409 - LTR7 LTR ERV1 -3 447 1 1495 57 40 20 chrX 1934521 1934768 -160665162 - HERVH LTR ERV1 0 7713 7462 2276 101 13 7 chrX 1935555 1935863 -160664067 - AluSx SINE Alu -2 310 1 664 158 23 0 chrX 1935996 1936129 -160663801 - L1PB4 LINE L1 0 6156 6021 2313 79 5 6 chrX 1936246 1936647 -160663283 - L1PA8A LINE L1 -541 5590 5190 325 191 0 0 chrX 1936647 1936715 -160663215 - L1MA7 LINE L1 -180 6111 6044 307 117 90 7 chrX 1936868 1937013 -160662917 + (TA)n Simple_repeat Simple_repeat 1 157 0 506 155 46 20 chrX 1937094 1937533 -160662397 + (TA)n Simple_repeat Simple_repeat 1 450 0 201 241 17 17 chrX 1937547 1937605 -160662325 + (TA)n Simple_repeat Simple_repeat 1 58 0 1152 226 39 77 chrX 1937979 1938418 -160661512 + MLT2B3 LTR ERVL 133 554 0 240 182 0 0 chrX 1938427 1938471 -160661459 + MLT1D LTR MaLR 2 45 -422 1729 70 8 0 chrX 1938535 1938777 -160661153 - L1PA13 LINE L1 -259 5904 5661 1067 228 231 3 chrX 1938779 1939126 -160660804 + MLT1D LTR MaLR 73 498 -7 4372 153 7 15 chrX 1940182 1940993 -160658937 - L1MA4 LINE L1 0 6300 5496 1087 294 122 46 chrX 1941518 1942298 -160657632 + Charlie2b DNA MER1_type 344 1182 -1600 837 275 67 50 chrX 1942760 1943255 -160656675 + L1MC4 LINE L1 6572 7074 -968 220 252 19 0 chrX 1943267 1943374 -160656556 + (TA)n Simple_repeat Simple_repeat 2 110 0 * 300 154 0 0 chrX 1943355 1943407 -160656523 + (TG)n Simple_repeat Simple_repeat 1 52 0 2870 134 2 29 chrX 1943491 1943982 -160655948 + MER1A DNA MER1_type 52 529 0 2478 148 2 0 chrX 1944046 1944451 -160655479 - L1PA15 LINE L1 -3 6162 5757 5094 99 17 0 chrX 1944476 1945235 -160654695 - L1PA11 LINE L1 -2 6172 5401 231 314 58 7 chrX 1945233 1945370 -160654560 + L1MC4a LINE L1 7172 7315 -493 * 3069 141 20 0 chrX 1945584 1946072 -160653858 + MER1A DNA MER1_type 32 529 0 379 390 30 4 chrX 1946700 1946969 -160652961 - L2 LINE L2 -337 2977 2702 895 166 213 68 chrX 1947041 1947124 -160652806 - MER44D DNA MER2_type -1882 609 539 479 17 17 0 chrX 1947124 1947184 -160652746 + (TAGA)n Simple_repeat Simple_repeat 2 62 0 895 166 213 68 chrX 1947184 1947396 -160652534 - MER44D DNA MER2_type -1952 539 1 1600 89 66 27 chrX 1947420 1947678 -160652252 - THE1B LTR MaLR -96 268 1 1209 148 0 0 chrX 1947719 1947922 -160652008 + L1MA2 LINE L1 6102 6304 0 845 264 63 48 chrX 1947939 1948402 -160651528 + MLT1D LTR MaLR 27 496 -9 555 124 21 10 chrX 1948801 1948898 -160651032 + MER4A LTR ERV1 1 98 -566 292 104 21 0 chrX 1948898 1948946 -160650984 + MER4A LTR ERV1 261 309 -355 2771 63 3 30 chrX 1948946 1949311 -160650619 - THE1A LTR MaLR 0 355 1 1831 127 0 23 chrX 1949320 1949620 -160650310 + MER4A LTR ERV1 372 664 0 317 82 20 0 chrX 1950438 1950487 -160649443 + (TC)n Simple_repeat Simple_repeat 2 51 0 649 69 10 10 chrX 1950572 1950673 -160649257 + (TC)n Simple_repeat Simple_repeat 2 102 0 637 176 0 37 chrX 1951608 1951795 -160648135 + (TAGA)n Simple_repeat Simple_repeat 1 180 0 22 0 0 0 chrX 1951873 1951895 -160648035 + AT_rich Low_complexity Low_complexity 1 22 0 344 290 0 24 chrX 1952801 1952970 -160646960 + MER53 DNA DNA 2 166 -23 666 233 0 0 chrX 1953664 1953844 -160646086 + (TCCA)n Simple_repeat Simple_repeat 1 180 0 209 327 6 0 chrX 1953855 1954011 -160645919 + (TCCA)n Simple_repeat Simple_repeat 1 157 0 645 230 0 0 chrX 1954052 1954230 -160645700 + (TCCA)n Simple_repeat Simple_repeat 1 178 0 208 232 11 32 chrX 1954314 1954409 -160645521 + (TCCA)n Simple_repeat Simple_repeat 3 95 0 24 0 0 0 chrX 1954943 1954967 -160644963 + AT_rich Low_complexity Low_complexity 1 24 0 273 203 43 0 chrX 1954967 1955078 -160644852 + GA-rich Low_complexity Low_complexity 1 115 0 1772 175 3 10 chrX 1955129 1955432 -160644498 - AluJb SINE Alu -11 301 1 1976 119 55 7 chrX 1956616 1956670 -160643260 - AluSx SINE Alu -5 307 257 189 74 0 0 chrX 1956670 1956697 -160643233 + (GAGTG)n Simple_repeat Simple_repeat 1 27 0 1976 119 55 7 chrX 1956697 1956935 -160642995 - AluSx SINE Alu -55 257 1 190 172 0 35 chrX 1957009 1957067 -160642863 + (TA)n Simple_repeat Simple_repeat 1 56 0 22 0 0 0 chrX 1957074 1957096 -160642834 + AT_rich Low_complexity Low_complexity 1 22 0 1234 133 19 6 chrX 1957454 1957692 -160642238 + L1MA9 LINE L1 5871 6100 -83 304 188 56 44 chrX 1957699 1957859 -160642071 + (TTATA)n Simple_repeat Simple_repeat 5 166 0 278 221 37 49 chrX 1958049 1958212 -160641718 + (TTATA)n Simple_repeat Simple_repeat 1 161 0 2301 78 3 7 chrX 1958222 1958517 -160641413 - AluY SINE Alu -17 294 1 214 244 30 30 chrX 1958597 1958728 -160641202 + (TATAA)n Simple_repeat Simple_repeat 4 134 0 301 211 46 40 chrX 1958959 1959134 -160640796 + (TTATA)n Simple_repeat Simple_repeat 1 176 0 26 30 0 0 chrX 1959295 1959328 -160640602 + AT_rich Low_complexity Low_complexity 1 33 0 717 264 65 0 chrX 1959975 1960176 -160639754 - MER58A DNA MER1_type -10 214 1 1707 170 3 32 chrX 1960224 1960536 -160639394 + AluJo SINE Alu 2 304 -8 4448 94 14 17 chrX 1961299 1961349 -160638581 + L1PA10 LINE L1 5515 5564 -604 2465 77 0 0 chrX 1961349 1961649 -160638281 + AluY SINE Alu 1 300 -11 4448 94 14 17 chrX 1961649 1962236 -160637694 + L1PA10 LINE L1 5564 6150 -18 488 225 16 47 chrX 1962387 1962425 -160637505 + MER58B DNA MER1_type 202 240 -2180 1966 180 25 22 chrX 1962425 1962541 -160637389 + MER57A LTR ERV1 1 115 -288 1673 150 29 51 chrX 1962541 1962854 -160637076 - AluJo SINE Alu -6 306 1 1966 180 25 22 chrX 1962854 1963138 -160636792 + MER57A LTR ERV1 115 402 -1 488 225 16 47 chrX 1963138 1963228 -160636702 + MER58B DNA MER1_type 240 326 -15 21 36 0 0 chrX 1964088 1964116 -160635814 + AT_rich Low_complexity Low_complexity 1 28 0 3346 127 35 6 chrX 1964992 1965504 -160634426 + MER1A DNA MER1_type 1 527 0 347 312 0 0 chrX 1965599 1965692 -160634238 + MLT1H LTR MaLR 262 354 -195 1146 171 5 0 chrX 1965843 1966048 -160633882 + MLT2B2 LTR ERVL 1 206 -309 4484 119 4 12 chrX 1966052 1966742 -160633188 + LTR8 LTR ERV1 7 691 0 727 227 0 11 chrX 1966753 1966929 -160633001 + MLT2B2 LTR ERVL 227 400 -115 467 189 0 0 chrX 1966947 1967021 -160632909 - AluJ/FLAM SINE Alu -236 76 3 424 279 88 0 chrX 1967024 1967171 -160632759 - MER58A DNA MER1_type 0 165 6 454 246 15 75 chrX 1967276 1967475 -160632455 + LTR4 LTR ERV1 16 202 -394 827 208 39 53 chrX 1967655 1967939 -160631991 + LTR4 LTR ERV1 317 596 0 358 279 111 24 chrX 1968346 1968554 -160631376 - L1MEc LINE L1 -6027 369 144 2718 122 35 2 chrX 1968645 1969073 -160630857 + MER4E LTR ERV1 1 442 -337 1070 97 13 0 chrX 1969066 1969220 -160630710 + MER4E LTR ERV1 611 766 0 * 3667 106 18 23 chrX 1969666 1969786 -160630144 - MER41A LTR ERV1 0 554 435 2346 107 0 3 chrX 1969786 1970094 -160629836 + AluSg SINE Alu 1 307 -3 3667 106 18 23 chrX 1970094 1970530 -160629400 - MER41A LTR ERV1 -119 435 1 1627 184 27 27 chrX 1970687 1970986 -160628944 - AluJo SINE Alu -13 299 1 1699 167 10 29 chrX 1971860 1972166 -160627764 + AluJb SINE Alu 1 300 -12 21 0 0 0 chrX 1972723 1972744 -160627186 + AT_rich Low_complexity Low_complexity 1 21 0 354 286 9 9 chrX 1973259 1973371 -160626559 + (TA)n Simple_repeat Simple_repeat 2 113 0 822 213 13 49 chrX 1973994 1974015 -160625915 - MER20 DNA MER1_type -1 218 198 4543 155 51 1 chrX 1974015 1974802 -160625128 + LTR1B LTR ERV1 1 826 0 822 213 13 49 chrX 1974802 1975005 -160624925 - MER20 DNA MER1_type -21 198 2 1327 183 3 97 chrX 1975194 1975505 -160624425 - AluJb SINE Alu -30 282 1 565 223 73 113 chrX 1975511 1976212 -160623718 - L1MC5 LINE L1 -184 7777 7105 1031 230 62 43 chrX 1976363 1976661 -160623269 - MLT1A2 LTR MaLR -15 359 51 2469 113 8 3 chrX 1976661 1977023 -160622907 - THE1B LTR MaLR 0 364 1 1031 230 62 43 chrX 1977023 1977076 -160622854 - MLT1A2 LTR MaLR -323 51 1 2527 165 34 47 chrX 1977357 1977494 -160622436 - LTR24C LTR ERV1 0 593 456 2345 98 0 16 chrX 1977494 1977800 -160622130 + AluSg SINE Alu 1 301 -9 2527 165 34 47 chrX 1977800 1978260 -160621670 - LTR24C LTR ERV1 -137 456 44 2015 143 0 16 chrX 1978260 1978568 -160621362 + AluSx SINE Alu 1 303 -9 2527 165 34 47 chrX 1978568 1978609 -160621321 - LTR24C LTR ERV1 -549 44 4 1554 150 0 35 chrX 1979137 1979417 -160620513 + AluSx SINE Alu 50 312 0 1565 189 22 6 chrX 1979784 1980100 -160619830 + MSTB1 LTR MaLR 1 321 -111 1065 144 9 50 chrX 1980100 1980322 -160619608 - LTR1 LTR ERV1 0 785 573 2110 107 3 13 chrX 1980329 1980627 -160619303 + AluSx SINE Alu 1 295 -17 2264 102 99 9 chrX 1980673 1981017 -160618913 - THE1C LTR MaLR 0 375 1 449 0 0 0 chrX 1981061 1981113 -160618817 - THE1B LTR MaLR -312 52 1 2200 125 7 0 chrX 1982001 1982304 -160617626 + AluSx SINE Alu 1 305 -7 217 271 0 0 chrX 1982393 1982441 -160617489 + GA-rich Low_complexity Low_complexity 3 50 0 192 276 83 77 chrX 1982885 1983041 -160616889 - L2 LINE L2 -2 3311 3155 31 0 0 0 chrX 1983714 1983745 -160616185 + AT_rich Low_complexity Low_complexity 1 31 0 1744 173 3 7 chrX 1983762 1984045 -160615885 - AluSx SINE Alu -30 282 1 1473 166 31 15 chrX 1984067 1984202 -160615728 - AluJo SINE Alu -49 263 121 360 0 0 0 chrX 1984202 1984242 -160615688 + (TA)n Simple_repeat Simple_repeat 2 41 0 1473 166 31 15 chrX 1984242 1984365 -160615565 - AluJo SINE Alu -191 121 1 327 68 0 0 chrX 1984376 1984420 -160615510 - FLAM SINE Alu -8 125 82 317 358 55 30 chrX 1984530 1984731 -160615199 - MIR SINE MIR -31 231 26 1968 163 38 10 chrX 1984905 1985297 -160614633 - MER57A LTR ERV1 0 403 1 2416 28 65 0 chrX 1985775 1986066 -160613864 - AluY SINE Alu -1 310 1 400 170 26 118 chrX 1987024 1987124 -160612806 + MER4A LTR ERV1 3 88 -576 2110 120 3 0 chrX 1987124 1987463 -160612467 - AluSx SINE Alu 0 340 1 400 170 26 118 chrX 1987463 1987513 -160612417 + MER4A LTR ERV1 88 141 -523 602 199 86 94 chrX 1987531 1987787 -160612143 - LTR13 LTR ERVK -753 254 1 643 158 0 0 chrX 1987787 1987882 -160612048 - AluS SINE Alu -217 95 1 583 198 0 0 chrX 1987882 1987993 -160611937 - L1M3 LINE L1 -505 5675 5565 971 131 23 11 chrX 1988041 1988217 -160611713 - Charlie3 DNA MER1_type -9 2701 2524 385 59 191 0 chrX 1988220 1988288 -160611642 - Charlie3 DNA MER1_type -2629 81 1 1237 198 60 35 chrX 1988288 1988607 -160611323 + L1MB5 LINE L1 5838 6164 -10 21 0 0 0 chrX 1988608 1988629 -160611301 + AT_rich Low_complexity Low_complexity 1 21 0 1402 207 43 20 chrX 1988859 1989158 -160610772 + AluJo SINE Alu 1 306 -6 233 307 72 30 chrX 1989311 1989477 -160610453 - L2 LINE L2 -51 3262 3090 195 100 0 0 chrX 1989835 1989865 -160610065 + (TC)n Simple_repeat Simple_repeat 2 31 0 240 149 0 0 chrX 1990193 1990240 -160609690 + (TATG)n Simple_repeat Simple_repeat 2 48 0 996 177 5 7 chrX 1990255 1990869 -160609061 + (TCCA)n Simple_repeat Simple_repeat 3 787 0 738 131 17 28 chrX 1990910 1991086 -160608844 + (TCTA)n Simple_repeat Simple_repeat 4 177 0 239 261 15 0 chrX 1991089 1991154 -160608776 + (TATG)n Simple_repeat Simple_repeat 2 67 0 198 351 158 12 chrX 1991250 1991421 -160608509 - MIR SINE MIR -51 211 16 43 81 0 0 chrX 1991561 1991660 -160608270 + AT_rich Low_complexity Low_complexity 1 99 0 25 51 0 0 chrX 1992283 1992322 -160607608 + AT_rich Low_complexity Low_complexity 1 39 0 261 119 0 0 chrX 1993009 1993051 -160606879 + (CA)n Simple_repeat Simple_repeat 1 42 0 217 254 0 0 chrX 1993690 1993745 -160606185 + (TA)n Simple_repeat Simple_repeat 1 55 0 1652 190 19 13 chrX 1994316 1994626 -160605304 + AluJo SINE Alu 1 312 0 24 0 0 0 chrX 1994675 1994699 -160605231 + AT_rich Low_complexity Low_complexity 1 24 0 244 0 56 0 chrX 1995036 1995072 -160604858 + (CAA)n Simple_repeat Simple_repeat 2 39 0 1664 152 92 7 chrX 1995079 1995362 -160604568 + AluJb SINE Alu 1 307 -5 317 167 13 0 chrX 1995432 1995510 -160604420 + GA-rich Low_complexity Low_complexity 2 80 0 2203 92 0 3 chrX 1996214 1996525 -160603405 - AluSc SINE Alu 0 310 1 300 322 68 19 chrX 1996529 1996734 -160603196 - L1M4 LINE L1 -845 5301 5087 24 0 0 0 chrX 1997448 1997472 -160602458 + AT_rich Low_complexity Low_complexity 1 24 0 3742 79 118 0 chrX 1997790 1998193 -160601737 + LTR66 LTR ERVL 1 486 -124 216 0 0 0 chrX 1998193 1998217 -160601713 + (TA)n Simple_repeat Simple_repeat 2 25 0 3742 79 118 0 chrX 1998217 1998357 -160601573 + LTR66 LTR ERVL 486 608 -2 19180 165 18 3 chrX 1998374 2001729 -160598201 + HERVL66 LTR ERVL 925 4329 0 3982 100 38 20 chrX 2001729 2002133 -160597797 + LTR66 LTR ERVL 1 421 -189 351 0 0 0 chrX 2002133 2002172 -160597758 + (TG)n Simple_repeat Simple_repeat 2 40 0 3982 100 38 20 chrX 2002172 2002366 -160597564 + LTR66 LTR ERVL 421 610 0 2051 155 0 3 chrX 2002540 2002843 -160597087 + AluJb SINE Alu 9 310 -2 384 324 144 28 chrX 2003786 2004215 -160595715 + L1M4 LINE L1 4549 5027 -1119 21 57 0 0 chrX 2004343 2004378 -160595552 + AT_rich Low_complexity Low_complexity 1 35 0 1382 118 52 38 chrX 2004485 2004772 -160595158 - THE1C LTR MaLR 0 375 85 368 61 0 0 chrX 2004762 2004811 -160595119 - Alu SINE Alu -251 49 1 * 575 148 9 19 chrX 2004834 2004942 -160594988 - THE1C LTR MaLR -268 107 1 24 53 0 0 chrX 2005068 2005106 -160594824 + AT_rich Low_complexity Low_complexity 1 38 0 24 32 0 0 chrX 2005297 2005328 -160594602 + AT_rich Low_complexity Low_complexity 1 31 0 1273 166 57 40 chrX 2005332 2005579 -160594351 + AluJb SINE Alu 60 310 -2 561 292 162 68 chrX 2005944 2006065 -160593865 + L1M4 LINE L1 2175 2283 -3863 2405 101 3 0 chrX 2006065 2006373 -160593557 + AluSp SINE Alu 1 309 -4 2323 62 0 55 chrX 2006378 2006703 -160593227 + AluY SINE Alu 3 309 -2 561 292 162 68 chrX 2006703 2007784 -160592146 + L1M4 LINE L1 2286 3497 -2649 296 282 94 47 chrX 2007862 2008011 -160591919 + L2 LINE L2 2738 2893 -421 691 168 22 0 chrX 2008078 2008215 -160591715 - L1MA7 LINE L1 -5 6286 6147 22 35 0 0 chrX 2008693 2008722 -160591208 + AT_rich Low_complexity Low_complexity 1 29 0 1643 169 25 0 chrX 2009076 2009360 -160590570 - AluSx SINE Alu -21 291 1 27 49 0 0 chrX 2010029 2010070 -160589860 + AT_rich Low_complexity Low_complexity 1 41 0 28 29 0 0 chrX 2010427 2010462 -160589468 + AT_rich Low_complexity Low_complexity 1 35 0 398 195 23 8 chrX 2011516 2011644 -160588286 + CT-rich Low_complexity Low_complexity 1 130 0 186 43 0 0 chrX 2012951 2012974 -160586956 + (CA)n Simple_repeat Simple_repeat 1 23 0 2232 115 0 7 chrX 2013127 2013432 -160586498 + AluSx SINE Alu 1 303 -9 672 280 93 21 chrX 2014504 2014655 -160585275 - L1M4 LINE L1 -1230 4916 4777 770 167 0 0 chrX 2014655 2014775 -160585155 - FLAM_A SINE Alu -13 120 1 672 280 93 21 chrX 2014775 2015152 -160584778 - L1M4 LINE L1 -1369 4777 4350 344 240 77 38 chrX 2015172 2015355 -160584575 - L1M4 LINE L1 -2101 4045 3856 1463 189 38 10 chrX 2015644 2015935 -160583995 + AluJo SINE Alu 1 299 -13 1721 100 118 14 chrX 2015936 2016215 -160583715 + AluYa8 SINE Alu 1 308 -2 748 121 35 14 chrX 2016244 2016582 -160583348 + GA-rich Low_complexity Low_complexity 1 344 0 1635 144 4 0 chrX 2016618 2016854 -160583076 - AluSg SINE Alu -73 237 1 868 170 114 1 chrX 2016876 2017081 -160582849 - L1MB1 LINE L1 -287 5902 5691 578 171 16 54 chrX 2017136 2017265 -160582665 + L1MC1 LINE L1 6026 6149 -184 1532 133 54 11 chrX 2017267 2017545 -160582385 - LTR38B LTR ERV1 0 610 321 * 2288 145 18 5 chrX 2017541 2017927 -160582003 - LTR38B LTR ERV1 -219 391 1 872 198 6 11 chrX 2017927 2018109 -160581821 + L1MC1 LINE L1 6148 6328 -5 407 148 62 16 chrX 2018969 2019282 -160580648 + (TCTA)n Simple_repeat Simple_repeat 1 327 0 29 0 0 0 chrX 2019324 2019353 -160580577 + AT_rich Low_complexity Low_complexity 1 29 0 228 312 71 21 chrX 2020261 2020402 -160579528 + MIR SINE MIR 91 238 -24 201 220 0 40 chrX 2020694 2020744 -160579186 + (TATG)n Simple_repeat Simple_repeat 1 48 0 * 211 294 0 0 chrX 2020711 2020779 -160579151 + (TA)n Simple_repeat Simple_repeat 2 69 0 217 182 15 15 chrX 2020811 2020877 -160579053 + (TA)n Simple_repeat Simple_repeat 2 67 0 277 229 29 6 chrX 2020933 2021109 -160578821 + (TA)n Simple_repeat Simple_repeat 1 180 0 357 273 0 37 chrX 2021185 2021372 -160578558 + (TA)n Simple_repeat Simple_repeat 1 180 0 363 261 7 14 chrX 2021477 2021615 -160578315 + (TA)n Simple_repeat Simple_repeat 2 138 0 219 139 0 0 chrX 2021654 2021690 -160578240 + (TA)n Simple_repeat Simple_repeat 1 36 0 223 191 0 21 chrX 2021725 2021772 -160578158 + (CATA)n Simple_repeat Simple_repeat 2 47 0 1868 142 10 10 chrX 2021780 2022075 -160577855 - AluSx SINE Alu -17 295 1 227 234 78 0 chrX 2022124 2022201 -160577729 - LTR50 LTR ERVL 0 795 713 234 0 0 0 chrX 2023103 2023129 -160576801 + (TC)n Simple_repeat Simple_repeat 1 26 0 * 378 0 0 0 chrX 2023128 2023170 -160576760 + (CA)n Simple_repeat Simple_repeat 1 42 0 25 0 0 0 chrX 2023372 2023397 -160576533 + AT_rich Low_complexity Low_complexity 1 25 0 2913 177 47 31 chrX 2023399 2024044 -160575886 - LTR8A LTR ERV1 -60 667 13 1579 150 64 16 chrX 2024258 2024571 -160575359 + MER4A LTR ERV1 1 328 -336 23 0 0 0 chrX 2024637 2024660 -160575270 + AT_rich Low_complexity Low_complexity 1 23 0 359 143 16 16 chrX 2024737 2024800 -160575130 + MER4C LTR ERV1 294 356 -109 5299 90 6 44 chrX 2025397 2026230 -160573700 + L1PB1 LINE L1 5353 6149 -2 220 229 24 0 chrX 2026372 2026455 -160573475 + (TATATG)n Simple_repeat Simple_repeat 4 88 0 2489 89 15 36 chrX 2027357 2027539 -160572391 - L1PB1 LINE L1 -5 6146 5962 2414 89 0 3 chrX 2027539 2027852 -160572078 - AluSx SINE Alu 0 312 1 2489 89 15 36 chrX 2027852 2028060 -160571870 - L1PB1 LINE L1 -189 5962 5764 1750 90 43 0 chrX 2028102 2028358 -160571572 - L1PB1 LINE L1 -360 5791 5525 279 0 0 0 chrX 2030374 2030405 -160569525 + (CA)n Simple_repeat Simple_repeat 2 32 0 2296 103 0 3 chrX 2030847 2031158 -160568772 + AluSq SINE Alu 1 310 -3 53 40 0 0 chrX 2031812 2031886 -160568044 + AT_rich Low_complexity Low_complexity 1 74 0 3069 168 27 14 chrX 2031959 2032149 -160567781 - L1MB3 LINE L1 -19 6164 5978 4988 75 6 3 chrX 2032149 2032807 -160567123 + PABL_A LTR ERV1 1 660 0 3069 168 27 14 chrX 2032807 2033242 -160566688 - L1MB3 LINE L1 -205 5978 5531 3781 49 0 0 chrX 2033242 2033707 -160566223 + L1PA5 LINE L1 5683 6150 -4 401 190 0 13 chrX 2033736 2033815 -160566115 - L1MB3 LINE L1 -646 5528 5451 2097 118 3 10 chrX 2033846 2034150 -160565780 + AluSx SINE Alu 1 302 -10 378 0 0 0 chrX 2034207 2034249 -160565681 + (TG)n Simple_repeat Simple_repeat 1 42 0 181 125 94 0 chrX 2034502 2034534 -160565396 - MER5C DNA MER1_type -199 125 91 238 284 81 0 chrX 2034636 2034710 -160565220 - L2 LINE L2 0 3272 3193 1627 168 3 56 chrX 2035009 2035313 -160564617 + AluJo SINE Alu 3 290 -22 279 226 36 14 chrX 2035649 2035732 -160564198 - L1MB3 LINE L1 -689 5462 5391 1832 159 0 28 chrX 2035732 2036053 -160563877 - AluSx SINE Alu 0 312 1 279 0 0 0 chrX 2036060 2036091 -160563839 + (TTA)n Simple_repeat Simple_repeat 3 33 0 25 75 0 0 chrX 2036192 2036245 -160563685 + AT_rich Low_complexity Low_complexity 1 53 0 21 36 0 0 chrX 2036479 2036507 -160563423 + AT_rich Low_complexity Low_complexity 1 28 0 1078 281 201 14 chrX 2037114 2037631 -160562299 - MLT1E2 LTR MaLR -12 614 1 351 192 0 0 chrX 2037690 2037763 -160562167 + (ATG)n Simple_repeat Simple_repeat 1 73 0 892 155 3 14 chrX 2037785 2038154 -160561776 + (ATG)n Simple_repeat Simple_repeat 1 364 0 209 222 32 0 chrX 2038796 2038859 -160561071 + (CATATA)n Simple_repeat Simple_repeat 1 65 0 423 0 0 0 chrX 2038880 2038927 -160561003 + (CA)n Simple_repeat Simple_repeat 2 48 0 2206 113 30 54 chrX 2038962 2039332 -160560598 + THE1B LTR MaLR 1 361 -3 1928 144 7 0 chrX 2039332 2039609 -160560321 - AluSx SINE Alu -33 279 1 404 100 39 56 chrX 2040497 2040677 -160559253 + (TTATA)n Simple_repeat Simple_repeat 3 179 0 339 177 48 8 chrX 2040677 2040801 -160559129 + (TA)n Simple_repeat Simple_repeat 1 129 0 2051 134 3 3 chrX 2040812 2041103 -160558827 - AluSx SINE Alu -21 291 1 745 172 9 0 chrX 2041413 2041529 -160558401 + FLAM_C SINE Alu 1 117 -16 198 0 0 0 chrX 2041557 2041579 -160558351 + (TG)n Simple_repeat Simple_repeat 2 23 0 456 263 0 43 chrX 2041738 2041924 -160558006 + CT-rich Low_complexity Low_complexity 3 180 0 217 189 0 19 chrX 2041952 2042005 -160557925 + T-rich Low_complexity Low_complexity 3 54 0 300 221 0 15 chrX 2042199 2042267 -160557663 - L1MC4 LINE L1 -1340 6702 6636 1120 165 0 0 chrX 2042267 2042437 -160557493 + AluJb SINE Alu 133 302 -10 1792 148 0 7 chrX 2042469 2042759 -160557171 - LTR51 LTR ERV1 0 671 384 324 176 0 0 chrX 2042760 2042828 -160557102 + (ATG)n Simple_repeat Simple_repeat 1 68 0 2099 155 57 5 chrX 2042831 2043198 -160556732 - LTR51 LTR ERV1 -285 386 1 2055 111 0 11 chrX 2043293 2043573 -160556357 + AluSx SINE Alu 24 300 -12 2037 136 7 13 chrX 2044806 2045115 -160554815 - AluSx SINE Alu -5 307 1 258 287 172 25 chrX 2045159 2045281 -160554649 - L2 LINE L2 -4 3309 3170 963 254 9 0 chrX 2045353 2045570 -160554360 + MER58A DNA MER1_type 6 224 0 229 270 35 43 chrX 2045583 2045698 -160554232 - L2 LINE L2 -233 3080 2967 1985 234 52 74 chrX 2045883 2046513 -160553417 - L1MD2 LINE L1 -16 6343 5730 1736 157 7 27 chrX 2046513 2046812 -160553118 - AluJb SINE Alu -19 293 1 1985 234 52 74 chrX 2046812 2046926 -160553004 - L1MD2 LINE L1 -629 5730 5615 30 27 0 0 chrX 2047200 2047237 -160552693 + AT_rich Low_complexity Low_complexity 1 37 0 3198 95 101 141 chrX 2048062 2048777 -160551153 + LTR12 LTR ERV1 1 686 -2 866 65 73 16 chrX 2048779 2048918 -160551012 + LTR12 LTR ERV1 270 713 -1 1728 184 0 14 chrX 2048992 2049285 -160550645 + AluJo SINE Alu 1 289 -23 639 208 0 0 chrX 2050533 2050663 -160549267 - FLAM_C SINE Alu -13 130 1 26 30 0 0 chrX 2050860 2050893 -160549037 + AT_rich Low_complexity Low_complexity 1 33 0 26 0 0 0 chrX 2051509 2051535 -160548395 + AT_rich Low_complexity Low_complexity 1 26 0 2319 87 3 10 chrX 2051541 2051850 -160548080 + AluY SINE Alu 3 309 -2 366 23 0 0 chrX 2052286 2052329 -160547601 + (CA)n Simple_repeat Simple_repeat 2 44 0 1673 172 26 20 chrX 2052608 2052910 -160547020 - AluJb SINE Alu -8 304 1 5181 125 44 18 chrX 2053302 2054182 -160545748 - MER4D LTR ERV1 0 903 1 2846 157 28 87 chrX 2054287 2054440 -160545490 + MER51D LTR ERV1 10 171 -486 2487 53 0 3 chrX 2054440 2054740 -160545190 + AluY SINE Alu 1 299 -12 2846 157 28 87 chrX 2054740 2055275 -160544655 + MER51D LTR ERV1 171 657 0 269 135 19 0 chrX 2055293 2055345 -160544585 + CT-rich Low_complexity Low_complexity 2 54 0 201 339 0 0 chrX 2055806 2055865 -160544065 + L2 LINE L2 3240 3298 -15 830 157 0 0 chrX 2056477 2056598 -160543332 + FLAM_C SINE Alu 2 122 -11 192 77 0 0 chrX 2056598 2056624 -160543306 + (CAGT)n Simple_repeat Simple_repeat 4 29 0 369 163 0 93 chrX 2057023 2057109 -160542821 + MER51D LTR ERV1 119 196 -461 1827 164 18 0 chrX 2057277 2057563 -160542367 + AluSx SINE Alu 4 294 -18 215 289 53 0 chrX 2057945 2058021 -160541909 + L2 LINE L2 3225 3304 -9 1729 163 4 7 chrX 2058334 2058610 -160541320 + AluJo SINE Alu 1 275 -37 425 196 14 28 chrX 2058611 2058754 -160541176 + GA-rich Low_complexity Low_complexity 4 144 0 2074 192 166 34 chrX 2059332 2060062 -160539868 - LTR1B LTR ERV1 0 826 1 2023 133 7 0 chrX 2060152 2060437 -160539493 + AluSq SINE Alu 4 290 -23 210 37 0 0 chrX 2060440 2060467 -160539463 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 637 168 0 0 chrX 2060480 2060587 -160539343 + FLAM_C SINE Alu 3 109 -34 27 29 0 0 chrX 2060587 2060621 -160539309 + AT_rich Low_complexity Low_complexity 1 34 0 25 31 0 0 chrX 2060944 2060976 -160538954 + AT_rich Low_complexity Low_complexity 1 32 0 1693 183 24 0 chrX 2061110 2061399 -160538531 + AluJb SINE Alu 6 301 -11 797 226 37 5 chrX 2061884 2062070 -160537860 + MER3 DNA MER1_type 1 192 -17 2697 128 32 40 chrX 2062070 2062666 -160537264 + MER4E LTR ERV1 1 779 0 3877 117 14 0 chrX 2062754 2063311 -160536619 - MER61E LTR ERV1 -4 565 1 1208 114 0 0 chrX 2063670 2063836 -160536094 - LTR8 LTR ERV1 0 691 526 1615 132 15 48 chrX 2063874 2064147 -160535783 - AluSx SINE Alu 0 312 49 559 189 0 0 chrX 2064151 2064241 -160535689 - AluS SINE Alu -222 90 1 2082 204 14 85 chrX 2064242 2064817 -160535113 - LTR8 LTR ERV1 -157 534 1 2538 50 0 7 chrX 2066230 2066531 -160533399 - AluY SINE Alu -12 299 1 3073 109 2 0 chrX 2066628 2067060 -160532870 + MER57B LTR ERV1 2 434 0 21 57 0 0 chrX 2067373 2067408 -160532522 + AT_rich Low_complexity Low_complexity 1 35 0 297 75 0 0 chrX 2067539 2067579 -160532351 + (TTTA)n Simple_repeat Simple_repeat 4 43 0 469 120 34 46 chrX 2068064 2068239 -160531691 + (TCTA)n Simple_repeat Simple_repeat 1 173 0 834 327 28 13 chrX 2068309 2068707 -160531223 - L1MC4a LINE L1 -1968 5840 5437 488 59 15 0 chrX 2068721 2068789 -160531141 + (TCTA)n Simple_repeat Simple_repeat 1 69 0 375 314 134 28 chrX 2068790 2069073 -160530857 - L1MC4a LINE L1 -1027 5119 4807 234 243 54 0 chrX 2069339 2069413 -160530517 + LTR33 LTR ERVL 435 512 -9 1680 161 9 24 chrX 2069765 2070094 -160529836 - L1MA8 LINE L1 -3 6288 5965 2609 7 0 0 chrX 2070384 2070666 -160529264 + AluYa5 SINE Alu 22 303 -8 456 349 0 0 chrX 2070890 2071036 -160528894 - L3 LINE CR1 -382 1195 1050 456 360 129 33 chrX 2071134 2071529 -160528401 - L3 LINE CR1 -742 835 403 271 184 0 18 chrX 2071637 2071751 -160528179 + (TA)n Simple_repeat Simple_repeat 1 112 0 1802 157 78 23 chrX 2072248 2072593 -160527337 - THE1B LTR MaLR 0 364 1 273 336 0 22 chrX 2073075 2073209 -160526721 + L1ME1 LINE L1 1441 1571 -4825 902 277 38 47 chrX 2073237 2073767 -160526163 - L1MC4a LINE L1 -3400 2746 2222 1048 135 0 59 chrX 2073781 2073951 -160525979 - FRAM SINE Alu -20 156 1 590 268 39 14 chrX 2074155 2074439 -160525491 + L1ME1 LINE L1 2868 3158 -3057 345 47 0 0 chrX 2074546 2074589 -160525341 + (CA)n Simple_repeat Simple_repeat 2 44 0 412 253 14 91 chrX 2074597 2074818 -160525112 + L1MD3 LINE L1 7787 7990 -5 283 304 59 37 chrX 2075252 2075627 -160524303 + L1ME1 LINE L1 4992 5374 -841 1412 278 74 34 chrX 2075681 2075871 -160524059 + L1ME1 LINE L1 5426 5607 -628 1926 141 31 0 chrX 2075871 2076161 -160523769 - AluSx SINE Alu -12 300 2 1412 278 74 34 chrX 2076161 2076672 -160523258 + L1ME1 LINE L1 5607 6155 -80 370 191 99 15 chrX 2076695 2076826 -160523104 - L1M4 LINE L1 -2909 3237 3096 366 276 40 55 chrX 2076839 2076945 -160522985 - L1M4 LINE L1 -3007 3139 3036 2140 114 44 33 chrX 2076945 2077305 -160522625 + THE1B LTR MaLR 1 364 0 366 276 40 55 chrX 2077305 2077397 -160522533 - L1M4 LINE L1 -3110 3036 2944 318 273 12 19 chrX 2077470 2077631 -160522299 + (TA)n Simple_repeat Simple_repeat 1 160 0 453 36 0 0 chrX 2077733 2077788 -160522142 + (TA)n Simple_repeat Simple_repeat 2 56 0 578 313 36 60 chrX 2078034 2078408 -160521522 + L1ME2 LINE L1 5741 6106 -58 2471 98 27 11 chrX 2078408 2078777 -160521153 + THE1C LTR MaLR 1 375 0 578 313 36 60 chrX 2078777 2078817 -160521113 + L1ME2 LINE L1 6106 6145 -19 1999 123 14 10 chrX 2079831 2080124 -160519806 + THE1B LTR MaLR 68 361 -3 320 249 50 86 chrX 2080456 2080677 -160519253 - L1MC5 LINE L1 -438 7523 7311 2652 46 0 0 chrX 2081457 2081762 -160518168 + AluY SINE Alu 1 305 -6 220 224 15 0 chrX 2081955 2082022 -160517908 + (TTAA)n Simple_repeat Simple_repeat 3 70 0 1713 176 13 0 chrX 2082444 2082745 -160517185 + L1PA16 LINE L1 5729 6033 -133 1154 158 49 25 chrX 2082745 2082948 -160516982 - THE1B LTR MaLR 0 364 157 237 132 44 22 chrX 2083871 2083962 -160515968 + (TA)n Simple_repeat Simple_repeat 1 93 0 73 79 0 0 chrX 2083968 2084108 -160515822 + AT_rich Low_complexity Low_complexity 1 140 0 337 253 0 77 chrX 2084485 2084679 -160515251 + T-rich Low_complexity Low_complexity 2 180 0 * 361 229 29 34 chrX 2084534 2084709 -160515221 + (TTG)n Simple_repeat Simple_repeat 2 175 0 204 135 32 40 chrX 2085243 2085369 -160514561 + (TATAA)n Simple_repeat Simple_repeat 5 129 0 302 138 52 23 chrX 2085379 2085553 -160514377 + (TA)n Simple_repeat Simple_repeat 2 180 0 198 149 27 14 chrX 2085681 2085755 -160514175 + (TA)n Simple_repeat Simple_repeat 2 76 0 200 197 34 14 chrX 2085785 2085932 -160513998 + (TA)n Simple_repeat Simple_repeat 2 151 0 2303 68 0 3 chrX 2085971 2086263 -160513667 + AluY SINE Alu 1 291 -20 1231 138 63 25 chrX 2086622 2086861 -160513069 + LTR29 LTR ERV1 140 387 -235 808 247 233 31 chrX 2087559 2087817 -160512113 - L1MD2 LINE L1 -21 6836 6631 2616 101 3 6 chrX 2087817 2088182 -160511748 + THE1B LTR MaLR 1 364 0 808 247 233 31 chrX 2088182 2088404 -160511526 - L1MD2 LINE L1 -226 6631 6259 1502 209 3 7 chrX 2088467 2088769 -160511161 - AluJb SINE Alu -11 301 1 341 120 8 51 chrX 2089145 2089262 -160510668 + (TA)n Simple_repeat Simple_repeat 2 113 0 496 282 86 48 chrX 2089303 2089594 -160510336 - MLT1L LTR MaLR -5 610 309 1624 196 0 24 chrX 2089830 2090144 -160509786 - AluJb SINE Alu 0 307 1 184 171 49 16 chrX 2090403 2090526 -160509404 + (TA)n Simple_repeat Simple_repeat 2 128 0 22 35 0 0 chrX 2090731 2090760 -160509170 + AT_rich Low_complexity Low_complexity 1 29 0 274 200 156 37 chrX 2091072 2091207 -160508723 - L1MD2 LINE L1 -2295 6011 5861 2552 261 51 44 chrX 2091932 2093069 -160506861 - L1MD2 LINE L1 -2345 4299 3155 1189 261 28 59 chrX 2093078 2093504 -160506426 - L1MD2 LINE L1 -6105 437 25 221 200 0 18 chrX 2093518 2093573 -160506357 + T-rich Low_complexity Low_complexity 1 54 0 2113 183 6 8 chrX 2093724 2094090 -160505840 + MLT1A1 LTR MaLR 1 365 0 1190 309 64 8 chrX 2094128 2094910 -160505020 - L1ME LINE L1 -3174 2906 2081 22 94 0 0 chrX 2094941 2095005 -160504925 + AT_rich Low_complexity Low_complexity 1 64 0 392 300 125 44 chrX 2095270 2095762 -160504168 - L1ME LINE L1 -4549 1531 1056 297 265 19 45 chrX 2095784 2095982 -160503948 - L1ME LINE L1 -5030 1040 839 22 56 0 0 chrX 2096178 2096214 -160503716 + AT_rich Low_complexity Low_complexity 1 36 0 21 71 0 0 chrX 2096541 2096583 -160503347 + AT_rich Low_complexity Low_complexity 1 42 0 751 167 0 0 chrX 2096583 2096703 -160503227 - FLAM_C SINE Alu -11 122 3 542 262 152 0 chrX 2097067 2097231 -160502699 + MER58A DNA MER1_type 1 189 -35 1182 262 131 22 chrX 2097349 2097754 -160502176 + MLT1E2 LTR MaLR 138 586 -40 2399 115 25 0 chrX 2097945 2098301 -160501629 + L1PA16 LINE L1 5793 6157 -9 340 154 53 28 chrX 2098829 2099082 -160500848 + (TAGA)n Simple_repeat Simple_repeat 1 259 0 470 120 82 0 chrX 2099149 2099385 -160500545 + (TAGA)n Simple_repeat Simple_repeat 1 255 0 180 0 0 0 chrX 2100023 2100043 -160499887 + (TTTTC)n Simple_repeat Simple_repeat 1 20 0 1483 184 4 8 chrX 2100046 2100307 -160499623 - AluJo SINE Alu -38 274 15 2541 93 31 6 chrX 2100776 2101131 -160498799 - THE1B LTR MaLR 0 364 1 1118 195 108 70 chrX 2101415 2101702 -160498228 - AluJo SINE Alu -3 299 2 192 217 0 0 chrX 2101876 2101922 -160498008 + CT-rich Low_complexity Low_complexity 2 47 0 1622 138 113 14 chrX 2102075 2102357 -160497573 + AluSg SINE Alu 1 310 0 1654 175 3 28 chrX 2103248 2103570 -160496360 + AluJo SINE Alu 1 315 0 1815 153 22 26 chrX 2104848 2105161 -160494769 + AluJo SINE Alu 1 312 0 2174 74 3 7 chrX 2105787 2106071 -160493859 - AluSg SINE Alu 0 310 28 1528 155 16 0 chrX 2106267 2106525 -160493405 - L1PA16 LINE L1 -22 6144 5883 3857 153 16 36 chrX 2107264 2107957 -160491973 + MER50 LTR ERV1 56 734 0 2585 100 5 26 chrX 2107962 2108343 -160491587 + THE1C LTR MaLR 3 375 0 732 257 9 36 chrX 2108414 2108636 -160491294 - MER20 DNA MER1_type -3 216 1 238 304 59 29 chrX 2108636 2108739 -160491191 + L2 LINE L2 3155 3301 -12 486 368 103 13 chrX 2109591 2110045 -160489885 - L2 LINE L2 -534 2780 2286 31 26 0 0 chrX 2110065 2110103 -160489827 + AT_rich Low_complexity Low_complexity 1 38 0 1094 206 23 0 chrX 2110124 2110386 -160489544 - L1MA3 LINE L1 0 6305 6038 243 152 0 0 chrX 2110436 2110482 -160489448 + (TG)n Simple_repeat Simple_repeat 1 46 0 316 298 38 100 chrX 2110602 2110847 -160489083 + L1MC4a LINE L1 5670 5889 -232 1832 193 107 5 chrX 2110847 2111266 -160488664 - MLT2C2 LTR ERVL 0 464 3 316 298 38 100 chrX 2111266 2111386 -160488544 + L1MC4a LINE L1 5889 6015 -106 1971 116 23 20 chrX 2112006 2112307 -160487623 - AluSc SINE Alu -5 304 3 24 96 0 0 chrX 2112376 2112449 -160487481 + AT_rich Low_complexity Low_complexity 1 73 0 918 109 33 51 chrX 2112717 2112906 -160487024 - THE1C LTR MaLR 0 375 203 634 85 0 11 chrX 2112905 2112999 -160486931 - THE1C LTR MaLR -335 93 1 * 21 0 0 0 chrX 2113079 2113100 -160486830 + AT_rich Low_complexity Low_complexity 1 21 0 1227 240 14 35 chrX 2113478 2113766 -160486164 - AluJo SINE Alu -30 282 1 367 275 34 60 chrX 2113777 2113828 -160486102 + L1ME LINE L1 5562 5613 -508 2172 110 0 41 chrX 2113828 2114147 -160485783 - AluSx SINE Alu -6 306 1 367 275 34 60 chrX 2114147 2114244 -160485686 + L1ME LINE L1 5613 5706 -415 303 192 0 0 chrX 2114404 2114477 -160485453 + GA-rich Low_complexity Low_complexity 2 74 0 2127 137 22 6 chrX 2114656 2115014 -160484916 - MLT1A1 LTR MaLR -1 364 1 2514 116 83 5 chrX 2116173 2116570 -160483360 - MSTA LTR MaLR 0 428 1 23 0 0 0 chrX 2118351 2118374 -160481556 + AT_rich Low_complexity Low_complexity 1 23 0 1615 199 10 7 chrX 2118855 2119151 -160480779 - AluJo SINE Alu -15 297 1 1789 101 41 48 chrX 2119371 2119639 -160480291 + AluSq SINE Alu 24 289 -24 246 105 0 0 chrX 2119847 2119885 -160480045 + (TG)n Simple_repeat Simple_repeat 2 39 0 2559 108 3 3 chrX 2119885 2120246 -160479684 + THE1B LTR MaLR 4 364 0 429 20 0 0 chrX 2120246 2120296 -160479634 + (TG)n Simple_repeat Simple_repeat 2 51 0 243 171 49 24 chrX 2121072 2121154 -160478776 + (TCTA)n Simple_repeat Simple_repeat 2 85 0 1060 183 0 0 chrX 2121353 2121528 -160478402 + AluJb SINE Alu 122 296 -16 2687 85 3 0 chrX 2121832 2122186 -160477744 + THE1A LTR MaLR 1 355 0 2112 116 10 0 chrX 2122473 2122767 -160477163 + AluSx SINE Alu 13 309 -3 1864 181 0 3 chrX 2123472 2123776 -160476154 + AluJo SINE Alu 3 305 -7 2030 135 10 0 chrX 2123849 2124137 -160475793 + AluSx SINE Alu 1 291 -21 853 131 14 7 chrX 2124357 2124502 -160475428 + Charlie3 DNA MER1_type 2561 2706 -4 4470 164 21 16 chrX 2124745 2125633 -160474297 + MER4D LTR ERV1 1 893 -10 2086 131 3 13 chrX 2125701 2126006 -160473924 + AluSx SINE Alu 1 302 -10 283 246 34 17 chrX 2126862 2126980 -160472950 + (CATATA)n Simple_repeat Simple_repeat 1 120 0 732 330 78 48 chrX 2126985 2127228 -160472702 + L1M4 LINE L1 2737 2971 -3175 2694 176 49 76 chrX 2127228 2127938 -160471992 - LTR8 LTR ERV1 0 691 1 732 330 78 48 chrX 2127938 2128574 -160471356 + L1M4 LINE L1 2971 3643 -2503 3822 121 16 16 chrX 2128575 2129210 -160470720 - MER41B LTR ERV1 0 635 1 596 244 23 23 chrX 2129284 2129460 -160470470 + LTR68 LTR ERV1 19 194 -546 681 194 69 0 chrX 2129643 2129803 -160470127 + LTR68 LTR ERV1 479 649 -91 1030 168 61 61 chrX 2129900 2129978 -160469952 - AluJo SINE Alu -14 298 221 2078 145 0 0 chrX 2129978 2130275 -160469655 - AluSx SINE Alu -15 297 1 1030 168 61 61 chrX 2130275 2130372 -160469558 - AluJo SINE Alu -91 221 120 351 0 0 0 chrX 2130372 2130411 -160469519 + (TA)n Simple_repeat Simple_repeat 2 40 0 1030 168 61 61 chrX 2130411 2130448 -160469482 - AluJo SINE Alu -191 121 85 1667 185 3 7 chrX 2130843 2131145 -160468785 + AluJo SINE Alu 1 301 -11 575 338 81 40 chrX 2131176 2131909 -160468021 + L1M4 LINE L1 4036 4798 -1348 2013 112 42 0 chrX 2132283 2132570 -160467360 + AluSx SINE Alu 1 299 -13 1865 160 0 13 chrX 2133169 2133476 -160466454 - AluJo SINE Alu -3 309 7 2239 111 0 22 chrX 2133571 2133887 -160466043 + AluSx SINE Alu 1 309 -3 1869 156 7 0 chrX 2134417 2134743 -160465187 - AluJb SINE Alu 0 328 1 514 140 0 19 chrX 2134985 2135092 -160464838 + (GGAA)n Simple_repeat Simple_repeat 2 106 0 2356 77 0 3 chrX 2135523 2135821 -160464109 - AluSg SINE Alu -13 297 1 1217 196 0 44 chrX 2136165 2136440 -160463490 - AluJo SINE Alu -10 302 40 198 103 0 0 chrX 2136914 2136943 -160462987 + (TG)n Simple_repeat Simple_repeat 2 30 0 1791 174 23 3 chrX 2137726 2138077 -160461853 - MLT1A1 LTR MaLR -1 364 7 1291 138 46 5 chrX 2138079 2138297 -160461633 + MER30 DNA MER1_type 4 230 0 23 33 0 0 chrX 2139217 2139247 -160460683 + AT_rich Low_complexity Low_complexity 1 30 0 231 351 54 40 chrX 2139330 2139478 -160460452 - L3 LINE CR1 -2 1575 1426 3502 89 26 4 chrX 2139817 2140323 -160459607 + L1PB2 LINE L1 5635 6151 0 288 0 0 0 chrX 2140342 2140374 -160459556 + (TA)n Simple_repeat Simple_repeat 2 33 0 2473 40 3 10 chrX 2140942 2141242 -160458688 - AluY SINE Alu -13 298 1 1824 231 59 12 chrX 2141287 2141358 -160458572 - L1MB5 LINE L1 -39 6135 6069 1772 145 11 11 chrX 2141358 2141675 -160458255 - AluJb SINE Alu 0 317 1 1824 231 59 12 chrX 2141675 2142095 -160457835 - L1MB5 LINE L1 -105 6069 5620 4694 88 25 1 chrX 2142143 2142816 -160457114 + L1PB1 LINE L1 5455 6143 -8 3146 105 6 0 chrX 2144018 2144505 -160455425 - L1MA3 LINE L1 -201 6104 5615 655 259 61 33 chrX 2144686 2145486 -160454444 + L1ME1 LINE L1 2926 3896 -2250 1922 254 44 72 chrX 2145545 2146588 -160453342 + L1ME1 LINE L1 5011 6018 -148 1576 215 10 0 chrX 2146588 2146876 -160453054 - AluJo SINE Alu -21 291 1 1922 254 44 72 chrX 2146876 2146991 -160452939 + L1ME1 LINE L1 6018 6135 -31 21 36 0 0 chrX 2147891 2147919 -160452011 + AT_rich Low_complexity Low_complexity 1 28 0 204 67 0 0 chrX 2149510 2149540 -160450390 + (CAAAA)n Simple_repeat Simple_repeat 1 30 0 27 0 0 0 chrX 2150138 2150165 -160449765 + AT_rich Low_complexity Low_complexity 1 27 0 23 54 0 0 chrX 2150425 2150462 -160449468 + AT_rich Low_complexity Low_complexity 1 37 0 748 167 6 6 chrX 2151285 2151459 -160448471 + CT-rich Low_complexity Low_complexity 1 174 0 502 209 12 11 chrX 2151504 2151769 -160448161 + CT-rich Low_complexity Low_complexity 1 265 0 414 280 155 0 chrX 2151804 2151995 -160447935 + MLT1F LTR MaLR 191 411 -131 4639 51 9 3 chrX 2151995 2153018 -160446912 + MER11A LTR ERVK 1 1266 0 393 277 7 15 chrX 2153019 2153156 -160446774 + MLT1F LTR MaLR 432 567 0 2264 115 0 7 chrX 2153976 2154281 -160445649 - AluSx SINE Alu -9 303 1 370 203 0 13 chrX 2154312 2154391 -160445539 + L1MB3 LINE L1 5451 5528 -646 3952 34 0 0 chrX 2154420 2154888 -160445042 - L1PA5 LINE L1 -4 6150 5683 3029 165 29 14 chrX 2154888 2155320 -160444610 + L1MB3 LINE L1 5531 5979 -204 4998 75 6 3 chrX 2155320 2155978 -160443952 - PABL_A LTR ERV1 0 660 1 3029 165 29 14 chrX 2155978 2156167 -160443763 + L1MB3 LINE L1 5979 6164 -19 240 309 0 15 chrX 2156790 2156858 -160443072 + C-rich Low_complexity Low_complexity 6 72 0 546 184 68 0 chrX 2156961 2157064 -160442866 - FLAM_C SINE Alu -33 110 1 262 307 79 10 chrX 2158031 2158132 -160441798 + LTR67 LTR ERVL 63 170 -387 296 307 22 17 chrX 2158299 2158478 -160441452 + LTR67 LTR ERVL 372 551 -6 2018 141 0 10 chrX 2158628 2158932 -160440998 - AluJb SINE Alu -11 301 1 761 161 42 7 chrX 2159442 2159585 -160440345 + FRAM SINE Alu 27 174 -2 1417 262 39 34 chrX 2159589 2160031 -160439899 + LTR8 LTR ERV1 247 690 -1 1666 183 10 10 chrX 2160041 2160330 -160439600 - AluJo SINE Alu -19 293 5 700 325 97 37 chrX 2160575 2161119 -160438811 + L1M4 LINE L1 4361 4937 -1209 2252 157 55 14 chrX 2161153 2161593 -160438337 - LTR29 LTR ERV1 -25 597 140 1158 208 58 3 chrX 2162724 2163017 -160436913 - MER33 DNA MER1_type -15 309 1 1161 209 40 8 chrX 2163176 2163429 -160436501 + LTR8 LTR ERV1 1 261 -430 302 130 0 0 chrX 2164034 2164080 -160435850 - MER20 DNA MER1_type -142 77 32 184 304 138 14 chrX 2164301 2164439 -160435491 - L3 LINE CR1 -133 1444 1290 195 129 0 0 chrX 2164901 2164932 -160434998 + (TAA)n Simple_repeat Simple_repeat 1 31 0 627 310 61 9 chrX 2164953 2165166 -160434764 - MIR SINE MIR -26 236 13 32 43 0 0 chrX 2165620 2165666 -160434264 + GC_rich Low_complexity Low_complexity 1 46 0 1716 127 0 0 chrX 2165971 2166207 -160433723 - AluSg/x SINE Alu -6 306 71 233 204 11 45 chrX 2166235 2166323 -160433607 + (CGGGG)n Simple_repeat Simple_repeat 2 86 0 * 306 246 0 62 chrX 2166319 2166498 -160433432 + (CCCCG)n Simple_repeat Simple_repeat 2 169 0 240 204 39 19 chrX 2166580 2166683 -160433247 + (CCCG)n Simple_repeat Simple_repeat 4 108 0 * 322 200 18 53 chrX 2166631 2166801 -160433129 + (CCCCG)n Simple_repeat Simple_repeat 3 166 0 2023 114 0 21 chrX 2216980 2217269 -160382661 + AluJb SINE Alu 22 304 -8 1424 191 61 50 chrX 2217401 2217762 -160382168 - MER47A DNA MER2_type -1 365 1 221 288 18 45 chrX 2217834 2217945 -160381985 + (TCCCG)n Simple_repeat Simple_repeat 3 110 0 216 274 0 0 chrX 2218025 2218076 -160381854 + CT-rich Low_complexity Low_complexity 2 52 0 1138 161 124 9 chrX 2218567 2218828 -160381102 + L1MC1 LINE L1 5727 5912 -252 21 36 0 0 chrX 2218841 2218869 -160381061 + GC_rich Low_complexity Low_complexity 1 28 0 21 0 0 0 chrX 2218956 2218977 -160380953 + GC_rich Low_complexity Low_complexity 1 21 0 243 215 46 0 chrX 2219063 2219128 -160380802 + C-rich Low_complexity Low_complexity 2 69 0 29 0 0 0 chrX 2219161 2219190 -160380740 + GC_rich Low_complexity Low_complexity 1 29 0 618 284 51 11 chrX 2220132 2220407 -160379523 - L1PA16 LINE L1 0 6166 5881 22 0 0 0 chrX 2220758 2220780 -160379150 + AT_rich Low_complexity Low_complexity 1 22 0 21 0 0 0 chrX 2221352 2221373 -160378557 + AT_rich Low_complexity Low_complexity 1 21 0 1343 94 0 0 chrX 2221724 2221894 -160378036 - AluSg/x SINE Alu -13 299 130 1602 153 0 4 chrX 2223141 2223416 -160376514 + L1MC1 LINE L1 6050 6323 -10 213 94 0 0 chrX 2223771 2223803 -160376127 + (TG)n Simple_repeat Simple_repeat 2 33 0 2269 92 3 0 chrX 2223884 2224177 -160375753 + AluY SINE Alu 4 297 -14 704 177 33 6 chrX 2224927 2225108 -160374822 - L1MA7 LINE L1 0 6291 6106 990 149 6 0 chrX 2225111 2225272 -160374658 + L1M2 LINE L1 5531 5692 -599 1989 167 8 24 chrX 2225320 2225341 -160374589 - MLT1A1 LTR MaLR 0 365 345 1732 201 76 92 chrX 2225341 2225904 -160374026 + MLT2B3 LTR ERVL 1 554 0 1989 167 8 24 chrX 2225904 2226253 -160373677 - MLT1A1 LTR MaLR -20 345 1 2621 106 0 8 chrX 2226535 2226902 -160373028 - THE1B LTR MaLR 0 364 1 320 266 37 0 chrX 2226938 2227047 -160372883 - MLT1I LTR MaLR 0 409 297 336 48 0 0 chrX 2227770 2227812 -160372118 + (TG)n Simple_repeat Simple_repeat 1 42 0 784 222 48 42 chrX 2228178 2228882 -160371048 + L1MA4A LINE L1 5597 6180 0 2007 111 0 42 chrX 2229344 2229650 -160370280 + AluSx SINE Alu 1 293 -19 312 27 0 0 chrX 2229683 2229720 -160370210 + (TG)n Simple_repeat Simple_repeat 2 38 0 23 0 0 0 chrX 2229730 2229753 -160370177 + AT_rich Low_complexity Low_complexity 1 23 0 492 194 19 9 chrX 2230119 2230227 -160369703 - L1MB7 LINE L1 -223 5961 5853 427 229 25 49 chrX 2230238 2230360 -160369570 + L1M3 LINE L1 5521 5639 -541 180 0 0 0 chrX 2230481 2230501 -160369429 + (A)n Simple_repeat Simple_repeat 1 20 0 2287 95 0 0 chrX 2230708 2231002 -160368928 - AluSc SINE Alu -15 294 1 270 226 37 0 chrX 2231198 2231474 -160368456 + (TA)n Simple_repeat Simple_repeat 1 286 0 24 0 0 0 chrX 2231474 2231498 -160368432 + AT_rich Low_complexity Low_complexity 1 24 0 578 137 0 73 chrX 2231512 2231636 -160368294 + L1MB5 LINE L1 6045 6159 -15 394 88 44 44 chrX 2231745 2231904 -160368026 + (TA)n Simple_repeat Simple_repeat 1 159 0 242 256 33 11 chrX 2231904 2231994 -160367936 + L1MC4 LINE L1 6612 6703 -1339 249 260 0 0 chrX 2232001 2232078 -160367852 + (TATATG)n Simple_repeat Simple_repeat 2 78 0 226 361 138 26 chrX 2232288 2232593 -160367337 + L3 LINE CR1 879 1217 -360 1867 125 3 36 chrX 2233806 2234106 -160365824 - MER4B LTR ERV1 0 610 321 494 56 113 0 chrX 2234106 2234177 -160365753 + MADE1 DNA Mariner 1 79 -1 * 1710 116 96 20 chrX 2234177 2234477 -160365453 - MER4B LTR ERV1 -287 323 1 184 179 64 0 chrX 2234477 2234555 -160365375 + (TA)n Simple_repeat Simple_repeat 1 83 0 201 205 36 24 chrX 2234586 2234669 -160365261 + (TA)n Simple_repeat Simple_repeat 1 84 0 198 143 0 0 chrX 2234815 2234850 -160365080 + (CA)n Simple_repeat Simple_repeat 2 36 0 249 196 20 0 chrX 2234921 2234972 -160364958 + (CA)n Simple_repeat Simple_repeat 2 53 0 311 332 99 9 chrX 2235309 2235520 -160364410 - L1MB7 LINE L1 -2167 5641 5412 668 294 13 20 chrX 2235575 2235878 -160364052 - AluYa5 SINE Alu 0 301 1 26 0 0 0 chrX 2235949 2235975 -160363955 + AT_rich Low_complexity Low_complexity 1 26 0 248 80 23 57 chrX 2236139 2236227 -160363703 + (TTTTTG)n Simple_repeat Simple_repeat 5 89 0 742 266 27 64 chrX 2236672 2237036 -160362894 + LTR40b LTR ERVL 139 462 0 40 96 0 6 chrX 2237374 2237425 -160362505 + AT_rich Low_complexity Low_complexity 1 51 -104 2314 80 0 19 chrX 2237425 2237737 -160362193 - AluY SINE Alu -5 306 1 40 96 0 6 chrX 2237737 2237841 -160362089 + AT_rich Low_complexity Low_complexity 51 155 0 228 346 16 24 chrX 2238518 2238645 -160361285 - MIR SINE MIR -110 152 27 757 230 14 78 chrX 2238951 2239168 -160360762 + MER8 DNA MER2_type 1 203 -36 247 286 15 15 chrX 2239461 2239594 -160360336 - AluSp SINE Alu -170 133 1 478 164 125 31 chrX 2239598 2239726 -160360204 + LOR1b LTR ERV1 32 171 -290 * 978 199 91 14 chrX 2239725 2239946 -160359984 + LOR1a LTR ERV1 260 497 0 3155 102 15 0 chrX 2240171 2240632 -160359298 + L1PA10 LINE L1 5699 6166 -2 2323 145 35 55 chrX 2241026 2241168 -160358762 - MSTC LTR MaLR -2 426 283 1627 177 0 55 chrX 2241168 2241479 -160358451 - AluJo SINE Alu -18 294 1 2323 145 35 55 chrX 2241479 2241771 -160358159 - MSTC LTR MaLR -145 283 1 216 221 52 52 chrX 2242468 2242545 -160357385 - MIR SINE MIR -55 207 131 200 198 49 25 chrX 2243207 2243288 -160356642 + (TTATA)n Simple_repeat Simple_repeat 5 87 0 32 26 0 0 chrX 2243661 2243700 -160356230 + AT_rich Low_complexity Low_complexity 1 39 0 946 137 256 64 chrX 2243738 2244051 -160355879 - MLT1A2 LTR MaLR -1 373 1 24 32 0 0 chrX 2244261 2244292 -160355638 + AT_rich Low_complexity Low_complexity 1 31 0 302 275 6 22 chrX 2245039 2245217 -160354713 + CT-rich Low_complexity Low_complexity 3 177 0 2175 128 53 0 chrX 2246023 2246670 -160353260 - L1P4 LINE L1 -551 5610 4926 1539 263 31 73 chrX 2246721 2247770 -160352160 + L1MA3 LINE L1 2057 6585 0 423 161 0 119 chrX 2247779 2247897 -160352033 + MER61E LTR ERV1 5 108 -461 293 175 143 0 chrX 2248029 2248092 -160351838 + MER51A LTR ERV1 209 280 -354 * 1382 185 83 33 chrX 2248063 2248425 -160351505 + LTR25 LTR ERV1 415 794 0 2206 271 48 16 chrX 2248444 2249202 -160350728 + L1ME LINE L1 2778 3575 -2571 1710 215 18 3 chrX 2249202 2249584 -160350346 - MLT1B LTR MaLR 0 390 3 2206 271 48 16 chrX 2249584 2249788 -160350142 + L1ME LINE L1 3575 3771 -2375 2043 246 35 42 chrX 2249789 2250509 -160349421 + L1ME LINE L1 3665 4379 -1767 240 271 14 0 chrX 2250602 2250672 -160349258 + L1ME LINE L1 5715 5785 -336 251 346 122 19 chrX 2250903 2251059 -160348871 - MIR SINE MIR -76 186 15 186 43 0 0 chrX 2251488 2251511 -160348419 + (CAAAA)n Simple_repeat Simple_repeat 3 25 0 274 184 26 0 chrX 2251824 2251900 -160348030 + CT-rich Low_complexity Low_complexity 4 81 0 2433 81 3 0 chrX 2253107 2253415 -160346515 + AluSx SINE Alu 1 309 -3 709 97 0 10 chrX 2253979 2254082 -160345848 + AluJ/FLAM SINE Alu 1 102 -210 576 189 33 14 chrX 2254376 2254514 -160345416 - MLT1C LTR MaLR -16 488 330 1210 186 10 0 chrX 2254841 2255045 -160344885 - AluJb SINE Alu -7 305 100 1278 145 10 10 chrX 2255045 2255252 -160344678 + MLT1A1 LTR MaLR 157 363 -2 279 114 0 0 chrX 2255895 2255939 -160343991 + (CA)n Simple_repeat Simple_repeat 1 44 0 3159 154 11 12 chrX 2256607 2257167 -160342763 + L1MA8 LINE L1 5676 6234 -57 249 88 0 53 chrX 2257403 2257460 -160342470 + L1MA9 LINE L1 6237 6290 -1 210 37 0 0 chrX 2257649 2257676 -160342254 + (TG)n Simple_repeat Simple_repeat 1 27 0 1428 114 8 28 chrX 2259195 2259360 -160340570 - L1MA2 LINE L1 0 6304 6144 2089 134 10 0 chrX 2259360 2259666 -160340264 - AluSx SINE Alu -3 309 1 1428 114 8 28 chrX 2259666 2259754 -160340176 - L1MA2 LINE L1 -160 6144 6056 209 200 0 0 chrX 2260051 2260091 -160339839 + A-rich Low_complexity Low_complexity 2 41 0 2710 97 17 12 chrX 2260671 2261074 -160338856 - L1PB1 LINE L1 -1 6150 5746 3030 95 32 2 chrX 2261468 2261909 -160338021 + L1PA12 LINE L1 5714 6167 -1 260 0 0 54 chrX 2262234 2262271 -160337659 + (CAAAAA)n Simple_repeat Simple_repeat 2 36 0 2149 119 3 0 chrX 2262278 2262572 -160337358 + AluSg SINE Alu 2 296 -14 1379 80 80 5 chrX 2263989 2264213 -160335717 - L1MA2 LINE L1 -236 6068 5828 537 125 7 145 chrX 2264212 2264364 -160335566 + L1MA2 LINE L1 6169 6299 -5 * 239 342 101 25 chrX 2264635 2264793 -160335137 + MIR SINE MIR 20 189 -73 1608 225 25 95 chrX 2265027 2265443 -160334487 - L1ME1 LINE L1 -163 6003 5662 4108 150 95 8 chrX 2265443 2266203 -160333727 + LTR1B LTR ERV1 1 826 0 1608 225 25 95 chrX 2266203 2266546 -160333384 - L1ME1 LINE L1 -504 5662 5297 1082 270 31 24 chrX 2266614 2267029 -160332901 - L1MD3 LINE L1 -59 7936 7519 540 116 49 6 chrX 2267034 2267198 -160332732 + (TAGA)n Simple_repeat Simple_repeat 4 174 0 295 154 31 74 chrX 2267201 2267363 -160332567 + (TATAA)n Simple_repeat Simple_repeat 5 159 0 * 303 174 72 14 chrX 2267261 2267399 -160332531 + (TA)n Simple_repeat Simple_repeat 2 147 0 411 208 25 117 chrX 2267408 2267476 -160332454 - Tigger2 DNA MER2_type 0 2718 2664 2058 118 3 3 chrX 2267476 2267763 -160332167 + AluSx SINE Alu 1 287 -25 411 208 25 117 chrX 2267763 2267814 -160332116 - Tigger2 DNA MER2_type -54 2664 2610 332 172 0 0 chrX 2267814 2267872 -160332058 - Tigger2 DNA MER2_type -2660 58 1 720 283 65 47 chrX 2268047 2268492 -160331438 - LTR40c LTR ERVL -6 459 7 259 307 78 52 chrX 2268528 2268820 -160331110 - L1MCc LINE L1 -5970 453 145 1617 200 40 115 chrX 2268820 2269089 -160330841 - MLT2B3 LTR ERVL 0 554 352 2060 132 0 21 chrX 2269089 2269415 -160330515 + AluSx SINE Alu 1 320 0 1617 200 40 115 chrX 2269415 2269743 -160330187 - MLT2B3 LTR ERVL -202 352 1 259 307 78 52 chrX 2269743 2269874 -160330056 - L1MCc LINE L1 -6278 145 19 490 301 43 12 chrX 2271216 2271379 -160328551 + MER5B DNA MER1_type 6 173 -5 2193 75 7 14 chrX 2271601 2271894 -160328036 - AluSc SINE Alu -18 291 1 2295 96 65 63 chrX 2272106 2272553 -160327377 + LTR7 LTR ERV1 1 448 -2 18262 96 13 37 chrX 2272555 2275613 -160324317 + HERVH LTR ERV1 1 2987 -4726 817 149 20 0 chrX 2275607 2275755 -160324175 + HERVH LTR ERV1 3140 3290 -4423 * 3076 109 20 6 chrX 2275745 2276240 -160323690 + HERVH LTR ERV1 3492 3993 -3720 3972 149 1 3 chrX 2276242 2276905 -160323025 + HERVH LTR ERV1 4488 5149 -2564 1326 104 38 0 chrX 2276906 2277118 -160322812 + HERVH LTR ERV1 5600 5819 -1894 2688 64 5 13 chrX 2277118 2277511 -160322419 + HERVH LTR ERV1 7324 7713 0 2043 116 84 64 chrX 2277511 2277950 -160321980 + LTR7 LTR ERV1 1 448 -2 5417 68 4 1 chrX 2278155 2278844 -160321086 - LTR8 LTR ERV1 0 691 1 1826 182 17 63 chrX 2278972 2279100 -160320830 + L1MA7 LINE L1 5840 5972 -319 2421 66 3 0 chrX 2279100 2279401 -160320529 + AluY SINE Alu 1 302 -9 2458 191 130 20 chrX 2279402 2280056 -160319874 - LTR8A LTR ERV1 0 727 2 1826 182 17 63 chrX 2280056 2280398 -160319532 + L1MA7 LINE L1 5971 6290 -1 34 55 0 0 chrX 2280398 2280453 -160319477 + AT_rich Low_complexity Low_complexity 1 55 0 4064 71 2 42 chrX 2280490 2281067 -160318863 - MER41A LTR ERV1 0 554 1 1151 214 105 3 chrX 2281790 2282075 -160317855 + MER7A DNA MER2_type 35 346 0 503 196 10 0 chrX 2283315 2283412 -160316518 - MER90 LTR ERV1 0 575 478 670 219 38 65 chrX 2283412 2283704 -160316226 + MLT1D LTR MaLR 1 284 -221 293 168 44 7 chrX 2283790 2283927 -160316003 + (TA)n Simple_repeat Simple_repeat 2 143 0 249 205 24 0 chrX 2283970 2284097 -160315833 + (TA)n Simple_repeat Simple_repeat 2 131 0 558 236 7 0 chrX 2284137 2284281 -160315649 - L1MB4 LINE L1 -2 6178 6034 232 96 58 0 chrX 2284285 2284337 -160315593 - L1MB4 LINE L1 -163 6011 5957 1883 119 0 61 chrX 2284499 2284811 -160315119 + AluSx SINE Alu 1 293 -19 312 27 0 0 chrX 2284843 2284880 -160315050 + (TG)n Simple_repeat Simple_repeat 2 38 0 23 0 0 0 chrX 2284890 2284913 -160315017 + AT_rich Low_complexity Low_complexity 1 23 0 461 194 19 9 chrX 2285279 2285387 -160314543 - L1MB4 LINE L1 -223 5961 5853 390 239 0 46 chrX 2285398 2285507 -160314423 + L1M3 LINE L1 5521 5624 -556 180 0 0 0 chrX 2285641 2285661 -160314269 + (A)n Simple_repeat Simple_repeat 1 20 0 2310 95 0 0 chrX 2285869 2286164 -160313766 - AluSc SINE Alu -14 295 1 270 226 37 0 chrX 2286360 2286636 -160313294 + (TA)n Simple_repeat Simple_repeat 1 286 0 24 0 0 0 chrX 2286636 2286660 -160313270 + AT_rich Low_complexity Low_complexity 1 24 0 608 193 0 0 chrX 2286674 2286809 -160313121 + L1MB4 LINE L1 6044 6178 -2 382 94 50 38 chrX 2286907 2287066 -160312864 + (TA)n Simple_repeat Simple_repeat 2 162 0 350 256 33 11 chrX 2287066 2287156 -160312774 + L1MC4 LINE L1 6612 6703 -1339 249 260 0 0 chrX 2287163 2287240 -160312690 + (TATATG)n Simple_repeat Simple_repeat 2 78 0 227 361 138 26 chrX 2287450 2287755 -160312175 + L3 LINE CR1 879 1217 -360 1794 180 41 22 chrX 2288804 2289171 -160310759 - MLT1A2 LTR MaLR 0 374 1 431 343 155 20 chrX 2290012 2290523 -160309407 - L2 LINE L2 -2318 996 417 1937 146 13 10 chrX 2290998 2291300 -160308630 + AluSx SINE Alu 1 303 -9 920 203 0 0 chrX 2291301 2291459 -160308471 + AluJo/FRAM SINE Alu 136 293 -19 317 171 0 14 chrX 2291519 2291589 -160308341 + (TA)n Simple_repeat Simple_repeat 1 69 0 450 287 0 0 chrX 2291741 2291849 -160308081 + Tigger3(Golem) DNA MER2_type 2921 3028 -1 1967 197 10 3 chrX 2291860 2292245 -160307685 - MER47B DNA MER2_type 0 418 31 1461 169 0 16 chrX 2292409 2292663 -160307267 + AluSx SINE Alu 63 312 0 197 159 23 0 chrX 2292664 2292708 -160307222 + (TA)n Simple_repeat Simple_repeat 2 46 0 211 196 18 27 chrX 2292853 2292965 -160306965 + (TA)n Simple_repeat Simple_repeat 1 111 0 267 103 0 0 chrX 2292965 2293004 -160306926 + (GA)n Simple_repeat Simple_repeat 2 40 0 1777 162 4 0 chrX 2294567 2294833 -160305097 + AluJb SINE Alu 35 301 -11 683 134 0 0 chrX 2295328 2295440 -160304490 + AluSg/x SINE Alu 190 301 -9 1443 261 42 18 chrX 2295579 2296127 -160303803 + L1ME1 LINE L1 5601 6161 -5 901 70 25 13 chrX 2296240 2296397 -160303533 + (TCTA)n Simple_repeat Simple_repeat 3 161 0 439 215 42 3 chrX 2296413 2296725 -160303205 + (TCTA)n Simple_repeat Simple_repeat 1 324 0 781 144 26 17 chrX 2296749 2297093 -160302837 + (TCTA)n Simple_repeat Simple_repeat 1 347 0 206 291 23 58 chrX 2297469 2297526 -160302404 - MIR SINE MIR -114 148 93 2373 74 0 3 chrX 2297526 2297823 -160302107 + AluSg SINE Alu 1 296 -14 206 291 23 58 chrX 2297823 2297851 -160302079 - MIR SINE MIR -169 93 66 681 177 33 6 chrX 2298573 2298754 -160301176 - L1MA7 LINE L1 0 6291 6106 939 149 6 0 chrX 2298757 2298918 -160301012 + L1M2 LINE L1 5531 5692 -599 1837 170 8 24 chrX 2298966 2298987 -160300943 - MLT1A1 LTR MaLR 0 365 345 1718 201 78 91 chrX 2298987 2299548 -160300382 + MLT2B3 LTR ERVL 1 554 0 1837 170 8 24 chrX 2299548 2299897 -160300033 - MLT1A1 LTR MaLR -20 345 1 2629 106 0 8 chrX 2300179 2300546 -160299384 - THE1B LTR MaLR 0 364 1 290 266 37 0 chrX 2300582 2300691 -160299239 - MLT1I LTR MaLR 0 409 297 336 48 0 0 chrX 2301414 2301456 -160298474 + (TG)n Simple_repeat Simple_repeat 1 42 0 344 164 0 0 chrX 2301723 2301784 -160298146 - MADE1 DNA Mariner -2 78 18 296 283 5 38 chrX 2301788 2301972 -160297958 + (CATATA)n Simple_repeat Simple_repeat 3 180 0 * 462 269 0 6 chrX 2301881 2302052 -160297878 + (TA)n Simple_repeat Simple_repeat 1 170 0 489 258 10 3 chrX 2302065 2302365 -160297565 + (TA)n Simple_repeat Simple_repeat 1 302 0 382 247 0 48 chrX 2302353 2302539 -160297391 + (TCTA)n Simple_repeat Simple_repeat 4 180 0 * 466 284 6 0 chrX 2302548 2302717 -160297213 + (TA)n Simple_repeat Simple_repeat 1 170 0 1469 200 3 77 chrX 2302721 2303096 -160296834 - MER7A DNA MER2_type 0 346 2 2133 159 77 12 chrX 2303143 2303545 -160296385 + MSTA LTR MaLR 1 428 0 432 158 0 0 chrX 2304191 2304267 -160295663 + CT-rich Low_complexity Low_complexity 3 78 0 1161 82 6 16 chrX 2304269 2304451 -160295479 + (TTTC)n Simple_repeat Simple_repeat 1 180 0 2017 115 11 4 chrX 2304451 2304730 -160295200 - AluSq SINE Alu -32 281 1 186 224 0 0 chrX 2304754 2304803 -160295127 + (TG)n Simple_repeat Simple_repeat 2 50 0 243 71 24 0 chrX 2305049 2305091 -160294839 + MADE1 DNA Mariner 1 43 -37 1528 194 61 0 chrX 2305104 2305397 -160294533 - AluSx SINE Alu -1 311 1 1172 197 5 0 chrX 2305835 2306053 -160293877 - L1PA15 LINE L1 -5 6160 5942 234 0 0 0 chrX 2307939 2307965 -160291965 + (TA)n Simple_repeat Simple_repeat 2 27 0 356 129 65 0 chrX 2308246 2308308 -160291622 - AluJ/FLAM SINE Alu -229 73 8 1895 143 16 0 chrX 2308308 2308615 -160291315 + L1PA16 LINE L1 5855 6166 0 632 163 10 0 chrX 2309690 2309788 -160290142 - FLAM_C SINE Alu -32 111 13 1597 153 0 4 chrX 2310511 2310786 -160289144 + L1MC1 LINE L1 6050 6323 -10 213 94 0 0 chrX 2311140 2311172 -160288758 + (TG)n Simple_repeat Simple_repeat 2 33 0 2464 74 3 0 chrX 2311250 2311560 -160288370 + AluY SINE Alu 1 361 0 258 120 40 0 chrX 2311560 2311610 -160288320 + GA-rich Low_complexity Low_complexity 4 180 0 1870 183 99 2 chrX 2312266 2312660 -160287270 + MSTB1 LTR MaLR 1 432 0 217 265 53 98 chrX 2312773 2312905 -160287025 - MER5A DNA MER1_type -22 167 42 194 358 40 61 chrX 2312783 2312931 -160286999 + MER5A DNA MER1_type 44 188 -1 * 1907 178 30 0 chrX 2313650 2314048 -160285882 + L1MA8 LINE L1 5882 6291 0 28 29 0 0 chrX 2314152 2314187 -160285743 + AT_rich Low_complexity Low_complexity 1 35 0 1220 151 165 62 chrX 2314491 2314763 -160285167 + AluJb SINE Alu 1 300 -2 1190 188 9 75 chrX 2315322 2315372 -160284558 - MLT1A1 LTR MaLR 0 365 313 1904 169 50 14 chrX 2315372 2315734 -160284196 + THE1C LTR MaLR 1 375 0 1190 188 9 75 chrX 2315734 2316002 -160283928 - MLT1A1 LTR MaLR -52 313 68 1603 185 15 0 chrX 2316003 2316333 -160283597 - MER47A DNA MER2_type -1 365 31 426 118 0 15 chrX 2316347 2316415 -160283515 - MLT1A1 LTR MaLR -304 70 4 417 277 15 34 chrX 2316733 2316939 -160282991 - L1ME LINE L1 -454 5777 5576 1626 178 0 44 chrX 2317041 2317362 -160282568 + AluJo SINE Alu 1 307 -5 385 322 61 20 chrX 2317404 2317699 -160282231 - L1ME LINE L1 -2133 4082 3776 1166 78 0 0 chrX 2317702 2317844 -160282086 - AluSp/q SINE Alu -16 297 156 210 71 0 0 chrX 2317950 2317978 -160281952 + (T)n Simple_repeat Simple_repeat 1 28 0 457 280 63 68 chrX 2318166 2318447 -160281483 - L1ME LINE L1 -2806 3409 3154 1743 198 0 3 chrX 2318447 2318750 -160281180 - AluJb SINE Alu -10 302 1 457 280 63 68 chrX 2318750 2319028 -160280902 - L1ME LINE L1 -3061 3154 2876 693 259 94 27 chrX 2319588 2319962 -160279968 + MER50 LTR ERV1 10 408 -326 1583 214 0 10 chrX 2320584 2320893 -160279037 + AluJo SINE Alu 1 306 -6 740 161 0 23 chrX 2321762 2321892 -160278038 + FRAM SINE Alu 47 173 -3 444 152 25 0 chrX 2321897 2321976 -160277954 + AluJo SINE Alu 56 136 -176 204 143 0 0 chrX 2325228 2325270 -160274660 + (TA)n Simple_repeat Simple_repeat 2 43 0 381 192 58 17 chrX 2325315 2325487 -160274443 + (TA)n Simple_repeat Simple_repeat 2 180 0 22 0 0 0 chrX 2326396 2326418 -160273512 + AT_rich Low_complexity Low_complexity 1 22 0 28 48 0 0 chrX 2326546 2326588 -160273342 + AT_rich Low_complexity Low_complexity 1 42 0 21 0 0 0 chrX 2326645 2326666 -160273264 + AT_rich Low_complexity Low_complexity 1 21 0 2162 258 50 83 chrX 2326740 2328975 -160270955 - L1MEc LINE L1 -3379 2836 718 919 270 39 32 chrX 2328982 2329040 -160270890 + L1M4 LINE L1 2692 2748 -3398 1991 142 53 11 chrX 2329040 2329400 -160270530 - THE1C LTR MaLR 0 375 1 919 270 39 32 chrX 2329400 2329807 -160270123 + L1M4 LINE L1 2748 3160 -2986 3254 104 16 22 chrX 2330202 2330712 -160269218 + MER84 LTR ERV1 1 507 0 2237 107 0 7 chrX 2331008 2331318 -160268612 + AluSc SINE Alu 1 308 -1 202 325 12 0 chrX 2331378 2331461 -160268469 + (CATATA)n Simple_repeat Simple_repeat 1 84 0 * 207 232 0 18 chrX 2331406 2331462 -160268468 + (TA)n Simple_repeat Simple_repeat 1 55 0 230 200 24 24 chrX 2331463 2331548 -160268382 - L1MC4 LINE L1 -1339 6703 6619 299 269 11 0 chrX 2332764 2332857 -160267073 + (TG)n Simple_repeat Simple_repeat 1 94 0 2581 162 44 29 chrX 2332886 2333473 -160266457 + LTR8A LTR ERV1 11 606 -121 3638 119 22 10 chrX 2333473 2334071 -160265859 - MER41B LTR ERV1 0 635 31 418 198 139 30 chrX 2334071 2334172 -160265758 + AluJb SINE Alu 177 288 -24 276 75 19 0 chrX 2334297 2334350 -160265580 - L1MB3 LINE L1 -2 6181 6128 2068 139 3 3 chrX 2334382 2334692 -160265238 - AluSx SINE Alu -2 310 1 1117 174 34 65 chrX 2334692 2334986 -160264944 - L1MB3 LINE L1 -41 6142 5858 1062 231 22 19 chrX 2335176 2335492 -160264438 - MLT1C LTR MaLR -2 465 149 2528 80 3 0 chrX 2335492 2335841 -160264089 - L1PB1 LINE L1 -25 6126 5777 805 215 0 0 chrX 2335841 2336013 -160263917 - MLT1C LTR MaLR -293 174 3 1304 148 65 0 chrX 2336096 2336312 -160263618 - MER30 DNA MER1_type 0 230 1 223 276 9 95 chrX 2336686 2336802 -160263128 - MIR SINE MIR -70 192 87 2203 128 0 0 chrX 2337028 2337334 -160262596 - AluSx SINE Alu -6 306 1 362 205 0 0 chrX 2337796 2337879 -160262051 - L1MA4A LINE L1 -22 6281 6199 2091 210 51 30 chrX 2337928 2338500 -160261430 - L1MB4 LINE L1 0 6180 5597 1828 192 0 3 chrX 2338500 2338812 -160261118 - AluJb SINE Alu 0 312 2 2229 93 17 0 chrX 2338877 2339168 -160260762 + AluSx SINE Alu 1 296 -16 563 227 13 18 chrX 2339952 2340493 -160259437 + CT-rich Low_complexity Low_complexity 1 538 0 25 0 0 0 chrX 2341995 2342020 -160257910 + AT_rich Low_complexity Low_complexity 1 25 0 288 0 0 0 chrX 2342353 2342385 -160257545 + (CA)n Simple_repeat Simple_repeat 1 32 0 347 189 8 28 chrX 2342710 2342848 -160257082 + CT-rich Low_complexity Low_complexity 1 135 0 1625 139 8 11 chrX 2343013 2343279 -160256651 - AluJb SINE Alu -20 292 28 32 0 0 0 chrX 2343282 2343314 -160256616 + AT_rich Low_complexity Low_complexity 1 32 0 23 33 0 0 chrX 2343783 2343813 -160256117 + AT_rich Low_complexity Low_complexity 1 30 0 201 132 0 0 chrX 2343837 2343875 -160256055 + (TTTTG)n Simple_repeat Simple_repeat 3 40 0 1910 118 59 0 chrX 2344358 2344689 -160255241 + AluSx SINE Alu 1 347 0 322 371 40 7 chrX 2345242 2345393 -160254537 - MIR SINE MIR -12 250 95 1735 249 56 6 chrX 2345769 2346250 -160253680 + MLT1D LTR MaLR 1 505 0 1634 196 3 10 chrX 2346649 2346709 -160253221 - AluJo SINE Alu 0 593 534 1185 0 22 39 chrX 2346709 2346891 -160253039 + (TTTC)n Simple_repeat Simple_repeat 1 179 0 1634 196 3 10 chrX 2346891 2347244 -160252686 - AluJo SINE Alu -59 534 1 490 293 21 21 chrX 2347330 2347518 -160252412 - MER5A DNA MER1_type 0 189 2 616 202 6 52 chrX 2347602 2347775 -160252155 + MER20 DNA MER1_type 30 194 -25 441 107 13 0 chrX 2349647 2349722 -160250208 + L1PB3 LINE L1 6070 6145 -9 570 29 0 0 chrX 2349722 2349790 -160250140 + (TA)n Simple_repeat Simple_repeat 2 69 0 888 136 17 11 chrX 2353027 2353203 -160246727 + CT-rich Low_complexity Low_complexity 3 179 0 931 144 6 6 chrX 2353249 2353422 -160246508 + CT-rich Low_complexity Low_complexity 4 176 0 1570 181 0 24 chrX 2353431 2353718 -160246212 - AluJo SINE Alu -32 280 1 672 219 45 60 chrX 2353721 2354081 -160245849 + LTR52 LTR ERVL 17 405 -16 233 332 63 35 chrX 2354119 2354405 -160245525 - MLT1L LTR MaLR -321 294 1 1943 140 3 7 chrX 2355666 2355982 -160243948 - AluSx SINE Alu 0 315 1 22 56 0 0 chrX 2356923 2356959 -160242971 + AT_rich Low_complexity Low_complexity 1 36 0 666 171 34 11 chrX 2357588 2357764 -160242166 + GA-rich Low_complexity Low_complexity 1 180 0 254 263 0 0 chrX 2357765 2357822 -160242108 + A-rich Low_complexity Low_complexity 2 58 0 1631 186 13 3 chrX 2357948 2358254 -160241676 - AluJb SINE Alu -3 309 1 500 204 0 0 chrX 2358471 2358601 -160241329 - FRAM SINE Alu 0 185 56 235 272 12 12 chrX 2358683 2358764 -160241166 + MIR3 SINE MIR 125 205 -3 22 35 0 0 chrX 2360902 2360931 -160238999 + AT_rich Low_complexity Low_complexity 1 29 0 191 358 37 9 chrX 2361691 2361800 -160238130 - MIR SINE MIR -62 146 35 1976 132 46 32 chrX 2361804 2362174 -160237756 - THE1C LTR MaLR 0 375 1 594 156 13 18 chrX 2362201 2362328 -160237602 + L1P4 LINE L1 5668 5792 -373 450 207 46 63 chrX 2362445 2362619 -160237311 - THE1C LTR MaLR -185 190 20 261 0 0 0 chrX 2362989 2363018 -160236912 + (T)n Simple_repeat Simple_repeat 1 29 0 1509 169 42 42 chrX 2363032 2363176 -160236754 + MLT1B LTR MaLR 1 144 -246 2524 118 3 3 chrX 2363176 2363539 -160236391 - THE1B LTR MaLR 0 364 2 1509 169 42 42 chrX 2363539 2363731 -160236199 + MLT1B LTR MaLR 143 337 -53 14576 158 8 6 chrX 2363746 2366365 -160233565 - L1P3 LINE L1 -2574 5010 2386 7653 143 15 7 chrX 2366400 2367599 -160232331 - L1P3 LINE L1 -4734 2264 991 2132 120 9 125 chrX 2367599 2367878 -160232052 + Tigger7 DNA MER2_type 2191 2400 -187 2629 113 0 0 chrX 2367878 2368240 -160231690 - THE1B LTR MaLR 0 364 3 2132 120 9 125 chrX 2368240 2368409 -160231521 + Tigger7 DNA MER2_type 2400 2587 0 1159 250 68 41 chrX 2368435 2368803 -160231127 + MLT1E3 LTR MaLR 236 613 -11 1397 185 24 20 chrX 2368810 2369107 -160230823 + LTR29 LTR ERV1 321 618 -4 404 344 39 18 chrX 2369258 2369543 -160230387 + L2 LINE L2 2189 2479 -835 2434 74 0 10 chrX 2369601 2369910 -160230020 + AluSq SINE Alu 1 306 -7 1487 174 79 8 chrX 2370197 2370462 -160229468 + AluJb SINE Alu 13 296 -16 1007 188 0 0 chrX 2370462 2370632 -160229298 + AluJo/FRAM SINE Alu 134 303 -9 773 186 118 10 chrX 2370861 2371065 -160228865 - AluJo SINE Alu 0 312 87 209 299 112 30 chrX 2371073 2371207 -160228723 + L2 LINE L2 1955 2099 -1215 5178 168 18 8 chrX 2372097 2372986 -160226944 - MER4D LTR ERV1 -5 898 1 181 333 48 0 chrX 2373326 2373410 -160226520 + MIR SINE MIR 158 245 -17 195 42 0 0 chrX 2373459 2373483 -160226447 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 1529 152 45 26 chrX 2373486 2373755 -160226175 - AluJo SINE Alu -30 282 9 195 271 21 0 chrX 2373960 2374008 -160225922 - MIR SINE MIR -86 122 74 22 35 0 0 chrX 2374109 2374138 -160225792 + AT_rich Low_complexity Low_complexity 1 29 0 191 321 18 0 chrX 2374258 2374314 -160225616 + L2 LINE L2 3184 3240 -32 416 193 0 50 chrX 2374354 2374535 -160225395 + (TA)n Simple_repeat Simple_repeat 1 172 0 594 133 6 60 chrX 2374551 2374883 -160225047 + (TA)n Simple_repeat Simple_repeat 1 313 0 654 103 5 60 chrX 2374935 2375119 -160224811 + (TA)n Simple_repeat Simple_repeat 1 174 0 302 275 6 22 chrX 2375412 2375590 -160224340 + GA-rich Low_complexity Low_complexity 3 177 0 1178 197 5 0 chrX 2377334 2377552 -160222378 - L1PA15 LINE L1 -5 6160 5942 576 189 33 14 chrX 2378295 2378433 -160221497 - MLT1C LTR MaLR -16 488 330 29 0 0 0 chrX 2379328 2379357 -160220573 + AT_rich Low_complexity Low_complexity 1 29 0 887 182 6 50 chrX 2379375 2379556 -160220374 - AluJb SINE Alu -14 298 126 1075 160 6 6 chrX 2380399 2380580 -160219350 + AluJb SINE Alu 132 312 0 2709 99 3 3 chrX 2381212 2381587 -160218343 + THE1C LTR MaLR 1 375 0 21 36 0 0 chrX 2381590 2381618 -160218312 + AT_rich Low_complexity Low_complexity 1 28 0 237 180 0 0 chrX 2381799 2381849 -160218081 + (TATATG)n Simple_repeat Simple_repeat 5 54 0 2196 97 7 10 chrX 2381927 2382242 -160217688 + AluY SINE Alu 1 314 0 21 0 0 0 chrX 2382256 2382277 -160217653 + AT_rich Low_complexity Low_complexity 1 21 0 1227 84 0 0 chrX 2382596 2382751 -160217179 + THE1B LTR MaLR 210 364 0 257 292 9 0 chrX 2382922 2383035 -160216895 - L1M4 LINE L1 -3178 2968 2855 4808 92 5 9 chrX 2385103 2385773 -160214157 - PABL_B LTR ERV1 0 667 1 2295 220 24 67 chrX 2386368 2386563 -160213367 - L1MA10 LINE L1 -1 6333 6131 219 69 0 0 chrX 2386563 2386592 -160213338 + (TG)n Simple_repeat Simple_repeat 2 30 0 2295 220 24 67 chrX 2386592 2387065 -160212865 - L1MA10 LINE L1 -203 6131 5694 2305 94 40 37 chrX 2387065 2387439 -160212491 - THE1C LTR MaLR 0 375 1 2295 220 24 67 chrX 2387439 2387473 -160212457 - L1MA10 LINE L1 -640 5694 5660 213 39 0 0 chrX 2388214 2388240 -160211690 + (TCTA)n Simple_repeat Simple_repeat 2 27 0 239 245 11 0 chrX 2388290 2388384 -160211546 + (TA)n Simple_repeat Simple_repeat 2 96 0 202 200 0 0 chrX 2388396 2388431 -160211499 + (CA)n Simple_repeat Simple_repeat 2 36 0 297 276 13 0 chrX 2389675 2389751 -160210179 + GA-rich Low_complexity Low_complexity 2 78 0 4699 161 55 30 chrX 2391520 2391700 -160208230 + L1MB3 LINE L1 5004 5178 -1005 1953 142 4 0 chrX 2391700 2391981 -160207949 + AluSq SINE Alu 1 282 -31 201 74 0 0 chrX 2391984 2392011 -160207919 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 4699 161 55 30 chrX 2392011 2392606 -160207324 + L1MB3 LINE L1 5179 5808 -375 1938 137 64 17 chrX 2392606 2392964 -160206966 + THE1C LTR MaLR 1 375 0 4699 161 55 30 chrX 2392964 2393348 -160206582 + L1MB3 LINE L1 5808 6181 -2 273 261 23 0 chrX 2393454 2393542 -160206388 - L1MA10 LINE L1 -3 6331 6242 21 0 0 0 chrX 2393542 2393563 -160206367 + AT_rich Low_complexity Low_complexity 1 21 0 430 252 18 0 chrX 2393751 2393862 -160206068 - L1M4 LINE L1 -2506 3640 3528 332 326 22 27 chrX 2393911 2394095 -160205835 - L1M4 LINE L1 -2627 3519 3337 1971 199 33 25 chrX 2394134 2394681 -160205249 - MLT2A2 LTR ERVL 0 554 1 790 269 9 9 chrX 2394681 2394896 -160205034 + MLT2D LTR ERVL 143 357 -57 515 190 41 19 chrX 2394898 2395215 -160204715 + (TCTA)n Simple_repeat Simple_repeat 1 324 0 237 124 56 11 chrX 2395228 2395317 -160204613 + (TCTA)n Simple_repeat Simple_repeat 3 95 0 253 80 20 20 chrX 2395364 2395414 -160204516 + (TCTA)n Simple_repeat Simple_repeat 4 53 0 250 163 0 0 chrX 2395419 2395462 -160204468 + MLT2D LTR ERVL 420 462 -2 203 281 18 0 chrX 2396242 2396299 -160203631 + CT-rich Low_complexity Low_complexity 2 59 0 206 365 78 0 chrX 2396311 2396426 -160203504 - L2 LINE L2 -1 3271 3148 1777 162 42 48 chrX 2397467 2397844 -160202086 + THE1C LTR MaLR 1 375 0 925 200 47 5 chrX 2397969 2398347 -160201583 + L1MB3 LINE L1 5574 6081 -102 1940 215 149 33 chrX 2398349 2399022 -160200908 + LTR1B LTR ERV1 1 955 -65 345 104 0 125 chrX 2399084 2399142 -160200788 + L1MB4 LINE L1 6094 6137 -43 2413 85 0 0 chrX 2399142 2399437 -160200493 + AluY SINE Alu 1 295 -16 345 104 0 125 chrX 2399437 2399474 -160200456 + L1MB4 LINE L1 6137 6177 -3 1168 96 0 34 chrX 2399855 2400032 -160199898 - L1PA11 LINE L1 0 6174 6004 1940 137 0 29 chrX 2400062 2400368 -160199562 - AluSg SINE Alu -13 297 1 1466 176 36 102 chrX 2400875 2401266 -160198664 - MLT1A1 LTR MaLR 0 365 1 2032 149 0 3 chrX 2401353 2401648 -160198282 + AluSx SINE Alu 1 294 -18 554 129 43 0 chrX 2402768 2402861 -160197069 - L1PB1 LINE L1 -1 6150 6054 26 64 0 0 chrX 2402896 2402943 -160196987 + AT_rich Low_complexity Low_complexity 1 47 0 350 168 57 3 chrX 2402959 2403324 -160196606 + (TA)n Simple_repeat Simple_repeat 1 384 0 273 184 57 0 chrX 2403344 2403502 -160196428 + (TA)n Simple_repeat Simple_repeat 2 168 0 205 218 18 0 chrX 2403526 2403581 -160196349 + (TTATA)n Simple_repeat Simple_repeat 3 58 0 245 98 24 0 chrX 2403597 2403638 -160196292 + (TG)n Simple_repeat Simple_repeat 1 42 0 2776 168 62 30 chrX 2405303 2405813 -160194117 + L1MC1 LINE L1 5727 6254 -79 1743 157 6 39 chrX 2405813 2406125 -160193805 + AluJb SINE Alu 1 302 -10 2776 168 62 30 chrX 2406125 2406188 -160193742 + L1MC1 LINE L1 6254 6314 -19 2258 82 4 0 chrX 2406452 2406795 -160193135 + AluSg SINE Alu 1 344 0 3245 89 22 26 chrX 2408801 2409306 -160190624 - L1PA13 LINE L1 -5 6158 5656 234 0 0 0 chrX 2409933 2409959 -160189971 + (A)n Simple_repeat Simple_repeat 1 26 0 34 65 0 0 chrX 2410568 2410630 -160189300 + AT_rich Low_complexity Low_complexity 1 62 0 21 36 0 0 chrX 2410722 2410750 -160189180 + AT_rich Low_complexity Low_complexity 1 28 0 1094 153 11 11 chrX 2410929 2411106 -160188824 - AluJb SINE Alu -2 310 134 408 40 0 0 chrX 2411106 2411156 -160188774 + (TTTTC)n Simple_repeat Simple_repeat 3 52 0 2338 64 0 3 chrX 2411156 2411438 -160188492 - AluY SINE Alu -30 281 1 1296 164 102 79 chrX 2411452 2411757 -160188173 - AluJo SINE Alu 0 312 1 28 48 0 0 chrX 2412058 2412100 -160187830 + GC_rich Low_complexity Low_complexity 1 42 0 27 35 0 0 chrX 2412168 2412197 -160187733 + GC_rich Low_complexity Low_complexity 1 29 0 53 40 0 0 chrX 2412298 2412372 -160187558 + GC_rich Low_complexity Low_complexity 1 74 0 255 319 28 14 chrX 2412615 2412759 -160187171 - MIR SINE MIR -12 250 105 1196 137 60 17 chrX 2413724 2413957 -160185973 + MER39B LTR ERV1 411 653 0 3274 125 4 8 chrX 2414210 2414705 -160185225 + MER1A DNA MER1_type 37 529 0 231 286 32 0 chrX 2414712 2414775 -160185155 + L2 LINE L2 3243 3307 -6 722 206 16 0 chrX 2415080 2415226 -160184704 + FLAM_C SINE Alu 1 148 0 223 203 0 94 chrX 2415605 2415669 -160184261 - L3 LINE CR1 -754 823 766 806 150 6 17 chrX 2415784 2415964 -160183966 + (TCTA)n Simple_repeat Simple_repeat 2 179 0 225 175 0 0 chrX 2415967 2416007 -160183923 + CT-rich Low_complexity Low_complexity 1 40 0 1999 151 66 45 chrX 2416017 2416441 -160183489 + Tigger2a DNA MER2_type 1 433 -1 294 29 0 0 chrX 2416442 2416477 -160183453 + (TG)n Simple_repeat Simple_repeat 2 36 0 376 341 54 47 chrX 2416525 2416801 -160183129 - L3 LINE CR1 -934 643 366 2208 107 3 19 chrX 2417732 2418040 -160181890 + AluSx SINE Alu 1 303 -9 2417 64 3 7 chrX 2418044 2418342 -160181588 + AluSp SINE Alu 1 297 -16 416 211 0 0 chrX 2419032 2419108 -160180822 + FLAM_A SINE Alu 46 121 -21 1590 185 7 26 chrX 2419115 2419417 -160180513 + AluJo SINE Alu 1 296 -16 2128 129 3 3 chrX 2419538 2419833 -160180097 + AluSx SINE Alu 1 295 -17 357 24 0 0 chrX 2419833 2419875 -160180055 + (TA)n Simple_repeat Simple_repeat 2 43 0 1756 189 30 30 chrX 2420091 2420462 -160179468 - MLT1A2 LTR MaLR 0 374 4 949 229 122 61 chrX 2420542 2421205 -160178725 - LTR27 LTR ERV1 0 636 3 351 147 93 0 chrX 2421961 2422036 -160177894 + MLT1I LTR MaLR 321 402 -7 1188 198 28 4 chrX 2423358 2423606 -160176324 + L1MB5 LINE L1 5913 6166 -8 1193 204 0 9 chrX 2424107 2424323 -160175607 + AluJo SINE Alu 1 214 -98 2189 188 19 24 chrX 2425046 2425509 -160174421 - MLT1C LTR MaLR -1 466 6 191 286 32 95 chrX 2425717 2425843 -160174087 - L2 LINE L2 -190 3082 2965 1869 93 53 50 chrX 2426774 2427097 -160172833 + THE1B LTR MaLR 41 364 0 3538 42 0 0 chrX 2427512 2427937 -160171993 + L1PA6 LINE L1 5729 6153 -1 635 303 40 14 chrX 2427943 2428293 -160171637 + L1MC3 LINE L1 6808 7166 -619 508 295 70 29 chrX 2428562 2428979 -160170951 + L1MC/D LINE L1 5284 5717 -2278 609 216 47 7 chrX 2429349 2429497 -160170433 + MER47A DNA MER2_type 1 154 -212 1662 121 24 34 chrX 2429597 2429810 -160170120 + LTR8A LTR ERV1 43 254 -473 2806 81 3 16 chrX 2429810 2430179 -160169751 + THE1B LTR MaLR 1 364 0 1662 121 24 34 chrX 2430179 2430262 -160169668 + LTR8A LTR ERV1 254 336 -391 2700 142 76 6 chrX 2430262 2430735 -160169195 - MER84 LTR ERV1 0 507 2 323 183 28 14 chrX 2430735 2430806 -160169124 - MER84 LTR ERVI -433 74 3 1241 160 106 83 chrX 2430808 2431195 -160168735 + LTR8A LTR ERV1 332 727 0 3056 180 56 3 chrX 2431421 2432011 -160167919 - LTR26E LTR ERV1 0 622 2 1268 179 112 166 chrX 2432377 2432977 -160166953 + LTR8A LTR ERV1 1 551 -176 3206 123 16 12 chrX 2432977 2433488 -160166442 - MER75 DNA T2_type 0 514 2 1268 179 112 166 chrX 2433488 2433656 -160166274 + LTR8A LTR ERV1 551 727 0 1543 193 21 17 chrX 2434718 2435008 -160164922 - AluJb SINE Alu -21 291 1 2973 81 26 71 chrX 2435177 2435576 -160164354 - L1PB1 LINE L1 0 6151 5777 351 0 0 0 chrX 2435576 2435615 -160164315 + (TG)n Simple_repeat Simple_repeat 2 40 0 2973 81 26 71 chrX 2435615 2435710 -160164220 - L1PB1 LINE L1 -374 5777 5679 987 180 9 18 chrX 2435982 2436199 -160163731 - L1MB2 LINE L1 -8 6163 5949 864 205 0 0 chrX 2437025 2437186 -160162744 + AluJb SINE Alu 137 297 -15 26 30 0 0 chrX 2437402 2437435 -160162495 + AT_rich Low_complexity Low_complexity 1 33 0 1639 203 11 34 chrX 2438100 2438525 -160161405 + MLT2B1 LTR ERVL 1 464 -56 2441 178 45 0 chrX 2438525 2438987 -160160943 - L1PB4 LINE L1 -4 6152 5670 1639 203 11 34 chrX 2438987 2439043 -160160887 + MLT2B1 LTR ERVL 464 520 0 29 28 0 0 chrX 2439848 2439884 -160160046 + AT_rich Low_complexity Low_complexity 1 36 0 220 189 38 0 chrX 2439922 2439975 -160159955 + (TA)n Simple_repeat Simple_repeat 1 55 0 1569 157 35 35 chrX 2440028 2440165 -160159765 + AluJo SINE Alu 1 137 -175 2312 105 0 0 chrX 2440165 2440471 -160159459 + AluSx SINE Alu 1 306 -6 1569 157 35 35 chrX 2440471 2440619 -160159311 + AluJo SINE Alu 136 286 -26 237 65 0 0 chrX 2440624 2440655 -160159275 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 526 244 103 0 chrX 2441262 2441418 -160158512 + L1MB5 LINE L1 5452 5623 -557 1916 235 14 6 chrX 2441709 2442194 -160157736 + L1MB5 LINE L1 5618 6106 -68 2805 145 21 53 chrX 2443997 2444527 -160155403 - L1PA16 LINE L1 0 6166 5654 353 280 100 72 chrX 2444902 2445263 -160154667 - L2 LINE L2 -2111 1203 833 885 207 15 0 chrX 2445979 2446177 -160153753 - L1MA7 LINE L1 -36 6255 6055 480 209 0 0 chrX 2446184 2446289 -160153641 - L1MB4 LINE L1 -10 6170 6066 29 101 0 0 chrX 2446300 2446399 -160153531 + AT_rich Low_complexity Low_complexity 1 99 0 7622 22 6 0 chrX 2446762 2448121 -160151809 + L1PA4 LINE L1 4790 6153 -2 25 31 0 0 chrX 2448721 2448753 -160151177 + AT_rich Low_complexity Low_complexity 1 32 0 576 233 16 0 chrX 2449354 2449483 -160150447 + MLT1C LTR MaLR 331 461 -6 740 248 13 9 chrX 2449488 2449718 -160150212 - MER33 DNA MER1_type -84 240 10 2091 241 95 40 chrX 2449736 2450517 -160149413 + LTR1B LTR ERV1 3 826 0 3130 128 4 0 chrX 2450694 2451186 -160148744 - MER75 DNA T2_type -20 494 1 252 0 0 0 chrX 2451804 2451832 -160148098 + (A)n Simple_repeat Simple_repeat 1 28 0 248 194 0 65 chrX 2451832 2451894 -160148036 - MER58A DNA MER1_type -21 86 29 24 0 0 0 chrX 2452065 2452089 -160147841 + AT_rich Low_complexity Low_complexity 1 24 0 248 291 19 19 chrX 2452233 2452336 -160147594 + (CATA)n Simple_repeat Simple_repeat 1 103 0 397 289 20 0 chrX 2452336 2452485 -160147445 - Zaphod DNA AcHobo -3435 596 445 2223 139 0 0 chrX 2452486 2452787 -160147143 - AluSx SINE Alu -11 301 1 686 262 47 83 chrX 2452994 2453029 -160146901 - Zaphod DNA AcHobo -3622 409 374 204 67 0 0 chrX 2453029 2453059 -160146871 + (TTAA)n Simple_repeat Simple_repeat 1 30 0 686 262 47 83 chrX 2453059 2453432 -160146498 - Zaphod DNA AcHobo -3657 374 16 23 0 0 0 chrX 2453484 2453507 -160146423 + AT_rich Low_complexity Low_complexity 1 23 0 742 30 0 10 chrX 2453508 2453607 -160146323 - L1MA4A LINE L1 -10 6293 6196 284 127 18 0 chrX 2453985 2454040 -160145890 + (CAAT)n Simple_repeat Simple_repeat 1 56 0 401 232 0 10 chrX 2454262 2454361 -160145569 - MLT1C LTR MaLR -5 462 365 1322 241 17 17 chrX 2454586 2454943 -160144987 - MLT1C LTR MaLR -104 363 7 24 0 0 0 chrX 2457258 2457282 -160142648 + AT_rich Low_complexity Low_complexity 1 24 0 1755 177 0 4 chrX 2457419 2457696 -160142234 + AluJo SINE Alu 15 290 -22 45 19 0 0 chrX 2457711 2457763 -160142167 + AT_rich Low_complexity Low_complexity 1 52 0 988 231 57 102 chrX 2457841 2458271 -160141659 + MLT1C LTR MaLR 1 408 -59 1756 199 3 0 chrX 2458271 2458573 -160141357 + AluJb SINE Alu 1 303 -9 988 231 57 102 chrX 2458573 2458631 -160141299 + MLT1C LTR MaLR 408 467 0 23 0 0 0 chrX 2458780 2458803 -160141127 + AT_rich Low_complexity Low_complexity 1 23 0 1625 173 52 4 chrX 2458924 2459217 -160140713 - AluJo SINE Alu 0 306 1 2345 136 155 0 chrX 2459217 2459694 -160140236 - L1MA8 LINE L1 -141 6150 5600 301 279 82 71 chrX 2459755 2459981 -160139949 - L1M4 LINE L1 -744 5402 5171 2084 134 0 0 chrX 2459981 2460272 -160139658 - AluSx SINE Alu -15 297 7 301 279 82 71 chrX 2460272 2460339 -160139591 - L1M4 LINE L1 -975 5171 5106 24 53 0 0 chrX 2460348 2460386 -160139544 + AT_rich Low_complexity Low_complexity 1 38 0 692 286 82 70 chrX 2460705 2461108 -160138822 + MLT1G1 LTR MaLR 16 402 -153 2851 186 14 80 chrX 2461108 2461845 -160138085 - LTR8 LTR ERV1 0 691 4 692 286 82 70 chrX 2461845 2462000 -160137930 + MLT1G1 LTR MaLR 402 554 -1 2106 114 28 0 chrX 2462012 2462301 -160137629 - AluSq SINE Alu -16 297 1 475 272 71 48 chrX 2463339 2463607 -160136323 - L1M4 LINE L1 -3737 2409 2136 2234 113 3 0 chrX 2465200 2465509 -160134421 - AluSx SINE Alu 0 312 3 430 171 0 0 chrX 2465520 2465596 -160134334 - L1PA10 LINE L1 -1 6167 6092 2533 102 15 63 chrX 2465961 2466439 -160133491 + L1MA3 LINE L1 5850 6304 -1 22 0 0 0 chrX 2466439 2466461 -160133469 + AT_rich Low_complexity Low_complexity 1 22 0 237 289 0 0 chrX 2467532 2467584 -160132346 - L2 LINE L2 -7 3265 3214 645 155 0 0 chrX 2467984 2468087 -160131843 - FLAM_A SINE Alu -10 132 30 2126 126 86 8 chrX 2469620 2469992 -160129938 + MER57A LTR ERV1 3 403 0 1120 167 29 5 chrX 2470290 2470494 -160129436 + L1PB3 LINE L1 5937 6145 -9 25 0 0 0 chrX 2470494 2470519 -160129411 + AT_rich Low_complexity Low_complexity 1 25 0 744 271 0 38 chrX 2470529 2470739 -160129191 - MLT1A2 LTR MaLR 0 374 173 363 115 44 26 chrX 2470751 2470864 -160129066 + (CAGAGA)n Simple_repeat Simple_repeat 4 118 0 537 111 22 44 chrX 2470887 2470913 -160129017 + (CAGAGA)n Simple_repeat Simple_repeat 5 30 -150 2126 57 40 47 chrX 2470913 2471212 -160128718 + AluY SINE Alu 1 297 -14 537 111 22 44 chrX 2471212 2471365 -160128565 + (CAGAGA)n Simple_repeat Simple_repeat 30 180 0 * 676 82 70 3 chrX 2471354 2471677 -160128253 + GA-rich Low_complexity Low_complexity 1 344 0 822 189 12 37 chrX 2471730 2471894 -160128036 - MLT1A2 LTR MaLR -213 161 2 2026 118 3 43 chrX 2472366 2472689 -160127241 - MER4A LTR ERV1 0 664 355 2236 101 11 46 chrX 2472727 2473094 -160126836 - MER4A LTR ERV1 -308 356 3 48 0 0 0 chrX 2473094 2473142 -160126788 + AT_rich Low_complexity Low_complexity 1 48 0 852 160 0 14 chrX 2474039 2474183 -160125747 - FRAM SINE Alu -10 166 25 250 202 71 60 chrX 2475055 2475139 -160124791 + L2 LINE L2 3227 3311 -2 888 224 72 89 chrX 2475297 2475646 -160124284 + Charlie1a DNA MER1_type 1 343 -1112 * 3252 194 55 52 chrX 2475639 2476293 -160123637 + Charlie1a DNA MER1_type 464 1124 -1637 1616 143 0 109 chrX 2476293 2476643 -160123287 + AluJo SINE Alu 1 312 0 3252 194 55 52 chrX 2476643 2476976 -160122954 + Charlie1a DNA MER1_type 1124 1454 -1 1883 173 127 2 chrX 2477297 2477707 -160122223 + MER65C LTR ERV1 1 461 0 21 71 0 0 chrX 2478012 2478054 -160121876 + AT_rich Low_complexity Low_complexity 1 42 0 25 0 0 0 chrX 2478520 2478545 -160121385 + AT_rich Low_complexity Low_complexity 1 25 0 21 71 0 0 chrX 2478559 2478601 -160121329 + AT_rich Low_complexity Low_complexity 1 42 0 27 0 0 0 chrX 2478643 2478670 -160121260 + AT_rich Low_complexity Low_complexity 1 27 0 208 321 22 30 chrX 2478882 2479016 -160120914 + (CATATA)n Simple_repeat Simple_repeat 5 137 0 220 271 0 0 chrX 2478967 2479015 -160120915 + (CA)n Simple_repeat Simple_repeat 1 48 0 3214 129 20 0 chrX 2479502 2479998 -160119932 - MER84 LTR ERV1 0 507 2 365 219 39 70 chrX 2480077 2480205 -160119725 - L1MC4 LINE L1 -8 8034 7911 546 217 35 7 chrX 2480338 2480481 -160119449 - L1MC4 LINE L1 -165 7877 7731 1342 258 100 67 chrX 2480482 2481505 -160118425 - L1MC4a LINE L1 -1389 6419 5363 345 331 139 14 chrX 2481605 2482028 -160117902 - L1MC4a LINE L1 -904 5242 4767 1594 170 4 4 chrX 2482133 2482398 -160117532 - AluJb SINE Alu -45 267 3 389 200 29 122 chrX 2483818 2484023 -160115907 + MER53 DNA DNA 2 187 -2 251 384 53 30 chrX 2484614 2484747 -160115183 - L2 LINE L2 -8 3264 3129 241 194 69 28 chrX 2485735 2485807 -160114123 + L1MC4 LINE L1 6629 6703 -1339 323 167 0 14 chrX 2485929 2485939 -160113991 + (TA)n Simple_repeat Simple_repeat 2 11 -61 878 196 70 15 chrX 2485939 2486138 -160113792 - MER6B DNA MER2_type 0 210 1 323 167 0 14 chrX 2486138 2486199 -160113731 + (TA)n Simple_repeat Simple_repeat 11 72 0 1732 135 8 8 chrX 2488545 2488812 -160111118 - AluSx SINE Alu -45 267 1 272 338 0 0 chrX 2489120 2489200 -160110730 + ERVL LTR ERVL 851 930 -4834 201 159 0 0 chrX 2489439 2489483 -160110447 + (TTG)n Simple_repeat Simple_repeat 2 45 0 308 343 76 46 chrX 2490334 2490728 -160109202 + ERVL LTR ERVL 1911 2316 -3338 842 191 6 6 chrX 2490770 2490938 -160108992 + MLT1B LTR MaLR 13 180 -210 1358 171 0 42 chrX 2490939 2491225 -160108705 + L1MA9 LINE L1 6008 6281 -31 1253 148 6 9 chrX 2491247 2491473 -160108457 + MLT1B LTR MaLR 167 396 0 1401 115 46 0 chrX 2491473 2491690 -160108240 + MLT1B LTR MaLR 158 384 -6 225 175 0 0 chrX 2491949 2491989 -160107941 - MLT1B LTR MaLR -183 207 168 420 202 35 1 chrX 2492004 2492118 -160107812 - L1MA9 LINE L1 -8 6292 6180 814 178 27 7 chrX 2492162 2492308 -160107622 + AluJb SINE Alu 134 282 -30 381 58 0 0 chrX 2492311 2492363 -160107567 + (TC)n Simple_repeat Simple_repeat 1 52 0 384 111 0 0 chrX 2492363 2492426 -160107504 + (TA)n Simple_repeat Simple_repeat 2 64 0 359 296 59 35 chrX 2492432 2492635 -160107295 + ERVL LTR ERVL 2725 2932 -2722 1425 294 42 8 chrX 2492647 2493031 -160106899 + MER70B LTR ERVL 4 400 -178 342 327 18 9 chrX 2495631 2495741 -160104189 + MER115 DNA AcHobo 158 268 -425 458 288 117 30 chrX 2496095 2496394 -160103536 + MER115 DNA AcHobo 352 676 -17 877 72 0 40 chrX 2496851 2496976 -160102954 - L1M1 LINE L1 -524 5778 5659 2814 90 26 9 chrX 2496976 2497397 -160102533 + L1MA1 LINE L1 5873 6301 -1 21 0 0 0 chrX 2497588 2497609 -160102321 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chrX 2498147 2498168 -160101762 + AT_rich Low_complexity Low_complexity 1 21 0 27 49 0 0 chrX 2498753 2498794 -160101136 + AT_rich Low_complexity Low_complexity 1 41 0 3743 164 47 12 chrX 2499321 2500021 -160099909 + L1MA4 LINE L1 5505 6236 -64 1800 141 61 30 chrX 2500021 2500384 -160099546 - THE1C LTR MaLR -1 374 1 3743 164 47 12 chrX 2500384 2500447 -160099483 + L1MA4 LINE L1 6236 6295 -5 233 159 0 45 chrX 2500893 2500937 -160098993 - L2 LINE L2 0 3313 3272 222 37 0 0 chrX 2500949 2500976 -160098954 + (TC)n Simple_repeat Simple_repeat 2 28 0 1311 167 25 0 chrX 2501359 2501599 -160098331 - L1MA4 LINE L1 -461 5839 5594 274 294 113 78 chrX 2502044 2502442 -160097488 - MLT1J LTR MaLR -6 505 94 236 164 0 36 chrX 2502686 2502741 -160097189 + (TTAA)n Simple_repeat Simple_repeat 3 55 0 202 292 10 73 chrX 2503349 2503445 -160096485 - L2 LINE L2 -1 3271 3182 331 244 27 0 chrX 2503497 2503589 -160096341 - FLAM SINE Alu -6 127 53 511 125 45 28 chrX 2503621 2503797 -160096133 + (TCTA)n Simple_repeat Simple_repeat 2 180 0 509 76 57 25 chrX 2503852 2504009 -160095921 + (TCTA)n Simple_repeat Simple_repeat 3 164 0 753 87 23 29 chrX 2504025 2504198 -160095732 + (TCTA)n Simple_repeat Simple_repeat 3 174 0 215 325 24 0 chrX 2504509 2504592 -160095338 + GA-rich Low_complexity Low_complexity 6 90 0 279 303 67 0 chrX 2504702 2504791 -160095139 - MIR SINE MIR -111 151 57 1538 201 38 3 chrX 2505142 2505435 -160094495 - AluJo SINE Alu -9 303 1 22 0 0 0 chrX 2505437 2505459 -160094471 + AT_rich Low_complexity Low_complexity 1 22 0 337 273 66 62 chrX 2505822 2506049 -160093881 - L2 LINE L2 0 3313 3086 1106 65 28 0 chrX 2506538 2506754 -160093176 + (TAGA)n Simple_repeat Simple_repeat 1 222 0 682 99 60 12 chrX 2506790 2507198 -160092732 + (TAGA)n Simple_repeat Simple_repeat 1 427 0 733 127 39 8 chrX 2507247 2507511 -160092419 + (TAGA)n Simple_repeat Simple_repeat 1 272 0 369 0 0 0 chrX 2507838 2507879 -160092051 + (TG)n Simple_repeat Simple_repeat 2 42 0 239 196 18 0 chrX 2507891 2507947 -160091983 + (TA)n Simple_repeat Simple_repeat 2 58 0 2237 157 23 45 chrX 2507960 2508401 -160091529 - Tigger2a DNA MER2_type 0 434 4 213 94 0 0 chrX 2508401 2508433 -160091497 + (TCTA)n Simple_repeat Simple_repeat 4 35 0 366 281 75 75 chrX 2509366 2509633 -160090297 + MLT1L LTR MaLR 1 267 -348 571 210 17 0 chrX 2510206 2510325 -160089605 - MLT1B LTR MaLR -264 126 6 297 68 0 0 chrX 2510325 2510369 -160089561 + (CA)n Simple_repeat Simple_repeat 2 45 0 1907 123 39 75 chrX 2511129 2511518 -160088412 - THE1C LTR MaLR 0 375 1 1756 242 43 2 chrX 2511699 2512120 -160087810 + MLT1C LTR MaLR 1 438 -29 222 208 0 0 chrX 2512861 2512909 -160087021 + (TG)n Simple_repeat Simple_repeat 1 48 0 206 121 0 0 chrX 2513524 2513557 -160086373 + (TC)n Simple_repeat Simple_repeat 2 34 0 261 0 0 0 chrX 2513825 2513854 -160086076 + (TG)n Simple_repeat Simple_repeat 1 29 0 1904 173 34 3 chrX 2514106 2514459 -160085471 - MLT1A1 LTR MaLR -1 364 1 350 278 68 25 chrX 2514540 2514702 -160085228 + MLT1G LTR MaLR 5 173 -376 1220 228 80 46 chrX 2514714 2515152 -160084778 + MLT1C LTR MaLR 15 467 0 1124 254 85 27 chrX 2515152 2515551 -160084379 + MLT1G LTR MaLR 166 549 0 292 125 21 0 chrX 2516415 2516463 -160083467 - MER3 DNA MER1_type -6 203 155 1740 136 75 59 chrX 2516486 2516813 -160083117 + L1MB3 LINE L1 5542 5822 -361 1909 184 0 0 chrX 2516813 2517123 -160082807 + AluJo SINE Alu 3 312 0 1740 136 75 59 chrX 2517123 2517176 -160082754 + L1MB3 LINE L1 5822 5873 -310 1909 184 18 3 chrX 2517178 2517515 -160082415 + MER7A DNA MER2_type 7 346 0 1304 132 0 5 chrX 2517515 2517720 -160082210 + L1MB3 LINE L1 5905 6108 -75 2636 140 28 28 chrX 2517722 2518160 -160081770 + L1PB4 LINE L1 5686 6126 -30 2054 110 86 6 chrX 2518160 2518497 -160081433 + THE1B LTR MaLR 1 364 0 2636 140 28 28 chrX 2518497 2518522 -160081408 + L1PB4 LINE L1 6125 6149 -7 239 348 43 14 chrX 2518570 2518708 -160081222 - MER3 DNA MER1_type -62 147 6 1969 153 0 0 chrX 2519255 2519570 -160080360 + AluSx SINE Alu 1 315 0 277 198 26 99 chrX 2520005 2520930 -160079000 + (CATATA)n Simple_repeat Simple_repeat 3 180 0 386 217 49 14 chrX 2520063 2520131 -160079799 + (TA)n Simple_repeat Simple_repeat 2 66 -83 2255 166 14 40 chrX 2520131 2520198 -160079732 - Tigger2a DNA MER2_type -2274 434 367 2063 128 3 0 chrX 2520198 2520487 -160079443 - AluSx SINE Alu -22 290 1 2255 166 14 40 chrX 2520487 2520865 -160079065 - Tigger2a DNA MER2_type -2341 367 1 386 217 49 14 chrX 2520865 2520939 -160078991 + (TA)n Simple_repeat Simple_repeat 66 149 0 183 281 320 8 chrX 2521177 2521305 -160078625 + MER5A DNA MER1_type 9 176 -13 922 146 18 0 chrX 2522397 2522629 -160077301 + GA-rich Low_complexity Low_complexity 1 236 0 1137 115 75 0 chrX 2523287 2523487 -160076443 - L1MA5A LINE L1 -10 6287 6073 2839 95 48 83 chrX 2523487 2523983 -160075947 - MER1A DNA MER1_type -2 527 49 462 111 0 0 chrX 2523986 2524058 -160075872 - L1MA5A LINE L1 -213 6084 6013 1031 189 0 0 chrX 2524360 2524524 -160075406 - AluJb SINE Alu -13 299 136 4192 91 22 11 chrX 2524867 2525497 -160074433 + L1PB2 LINE L1 5515 6151 0 25 31 0 0 chrX 2525732 2525764 -160074166 + AT_rich Low_complexity Low_complexity 1 32 0 22 0 0 0 chrX 2525885 2525907 -160074023 + AT_rich Low_complexity Low_complexity 1 22 0 2449 82 0 3 chrX 2526217 2526520 -160073410 - AluSq SINE Alu -11 302 1 1295 127 81 163 chrX 2527750 2528247 -160071683 - LTR1 LTR ERV1 -329 456 1 406 235 52 15 chrX 2528305 2528441 -160071489 + (CTATG)n Simple_repeat Simple_repeat 3 143 0 396 194 28 33 chrX 2528441 2528621 -160071309 + (TTATG)n Simple_repeat Simple_repeat 1 179 0 1504 129 0 18 chrX 2529362 2529586 -160070344 + AluJo SINE Alu 1 220 -92 1052 174 58 45 chrX 2529586 2529810 -160070120 + AluJb SINE Alu 86 312 0 36 70 0 0 chrX 2531378 2531449 -160068481 + AT_rich Low_complexity Low_complexity 1 71 0 24 0 0 0 chrX 2531528 2531552 -160068378 + AT_rich Low_complexity Low_complexity 1 24 0 213 154 0 0 chrX 2531641 2531680 -160068250 + CT-rich Low_complexity Low_complexity 2 40 0 1392 182 31 35 chrX 2531698 2531956 -160067974 - AluJo SINE Alu -31 281 25 365 290 113 20 chrX 2532394 2532694 -160067236 - L1M4 LINE L1 -2130 4016 3689 22 0 0 0 chrX 2532723 2532745 -160067185 + AT_rich Low_complexity Low_complexity 1 22 0 1383 146 4 0 chrX 2532983 2533216 -160066714 + MLT1B LTR MaLR 31 264 -126 818 161 0 83 chrX 2533219 2533411 -160066519 - MLT1C LTR MaLR -291 176 1 288 53 0 0 chrX 2535209 2535247 -160064683 + (TG)n Simple_repeat Simple_repeat 2 39 0 1874 144 32 0 chrX 2535520 2535859 -160064071 - L1MA5 LINE L1 -5 6295 5946 2320 145 2 28 chrX 2535991 2536391 -160063539 + MLT1B LTR MaLR 1 390 0 319 166 36 50 chrX 2537176 2537371 -160062559 + (TA)n Simple_repeat Simple_repeat 1 192 0 180 111 0 0 chrX 2537377 2537404 -160062526 + (TG)n Simple_repeat Simple_repeat 2 28 0 215 91 91 42 chrX 2537479 2537644 -160062286 + (TA)n Simple_repeat Simple_repeat 1 173 0 189 107 0 0 chrX 2537670 2537698 -160062232 + (CA)n Simple_repeat Simple_repeat 1 28 0 372 224 0 0 chrX 2537701 2537768 -160062162 + MER6 DNA MER2_type -65 1 -143 868 123 6 37 chrX 2537794 2537957 -160061973 + AluSq SINE Alu 1 158 -155 189 74 0 0 chrX 2538538 2538565 -160061365 + (TG)n Simple_repeat Simple_repeat 2 28 0 1594 155 10 37 chrX 2538924 2539221 -160060709 + AluJo SINE Alu 6 294 -18 1823 290 76 32 chrX 2539675 2541071 -160058859 - L1MC/D LINE L1 -572 5575 4162 333 189 37 37 chrX 2541092 2541387 -160058543 + (TCTA)n Simple_repeat Simple_repeat 1 295 0 1681 271 69 66 chrX 2541402 2542574 -160057356 - L1MC/D LINE L1 -2010 4119 2944 1757 149 7 20 chrX 2542578 2542879 -160057051 + MER61A LTR ERV1 47 343 0 579 277 20 66 chrX 2542895 2543245 -160056685 - L1MC/D LINE L1 -3474 2655 2322 659 136 8 76 chrX 2543246 2543378 -160056552 - MER31A LTR ERV1 -361 124 2 3501 118 6 2 chrX 2543437 2543956 -160055974 + L1MA3 LINE L1 5374 5894 -411 315 0 0 0 chrX 2544269 2544304 -160055626 + (TG)n Simple_repeat Simple_repeat 2 36 0 258 323 21 0 chrX 2544633 2544729 -160055201 - L1ME LINE L1 -532 5589 5492 239 161 18 0 chrX 2544887 2544943 -160054987 + (CA)n Simple_repeat Simple_repeat 2 58 0 260 345 0 0 chrX 2544985 2545127 -160054803 + T-rich Low_complexity Low_complexity 1 142 0 286 80 40 0 chrX 2545474 2545524 -160054406 + (TA)n Simple_repeat Simple_repeat 1 52 0 2313 129 35 7 chrX 2545615 2546018 -160053912 - L1MA5A LINE L1 -10 6287 5874 319 336 35 9 chrX 2546020 2546136 -160053794 - L1MC/D LINE L1 -4892 1227 1109 911 168 19 0 chrX 2546284 2546445 -160053485 + FRAM SINE Alu 5 168 -8 1510 172 86 0 chrX 2546451 2546742 -160053188 - Tigger3(Golem) DNA MER2_type -2713 316 1 2306 119 0 0 chrX 2546751 2547063 -160052867 - AluSx SINE Alu 0 312 1 269 265 10 49 chrX 2547275 2547377 -160052553 + MIR SINE MIR 94 191 -71 262 273 39 0 chrX 2547666 2547743 -160052187 - MER20 DNA MER1_type -1 218 139 308 152 0 0 chrX 2547745 2547791 -160052139 + MSTA LTR MaLR 1 46 -382 429 290 39 78 chrX 2547903 2548262 -160051668 + L1M4 LINE L1 2789 3133 -3013 1528 62 4 74 chrX 2548443 2548687 -160051243 + Tigger3(Golem) DNA MER2_type 2202 2428 -601 755 173 0 15 chrX 2548691 2548824 -160051106 + AluJo/FLAM SINE Alu 1 131 -171 379 177 0 0 chrX 2548824 2548886 -160051044 + AluSq SINE Alu 134 195 -108 * 3643 132 35 5 chrX 2548881 2549479 -160050451 + Tigger3(Golem) DNA MER2_type 2414 3029 0 401 185 25 38 chrX 2549479 2549636 -160050294 + (TA)n Simple_repeat Simple_repeat 1 155 0 216 92 46 46 chrX 2549664 2549729 -160050201 + (TA)n Simple_repeat Simple_repeat 2 66 0 349 123 27 68 chrX 2549729 2549802 -160050128 - MER6 DNA MER2_type 0 865 796 210 145 0 116 chrX 2600992 2601061 -159998869 + (TCCCC)n Simple_repeat Simple_repeat 4 64 0 1828 114 0 8 chrX 2601137 2601392 -159998538 + AluSx SINE Alu 1 253 -59 396 194 28 33 chrX 2602023 2602203 -159997727 + (CATAA)n Simple_repeat Simple_repeat 1 179 0 406 235 52 15 chrX 2602203 2602339 -159997591 + (CATAG)n Simple_repeat Simple_repeat 3 143 0 3607 100 96 78 chrX 2602410 2603170 -159996760 + LTR1 LTR ERV1 12 785 0 305 204 0 45 chrX 2603195 2603352 -159996578 + (CATAG)n Simple_repeat Simple_repeat 1 150 0 270 168 21 42 chrX 2603375 2603470 -159996460 + (CATAG)n Simple_repeat Simple_repeat 2 94 0 592 166 11 44 chrX 2603474 2603655 -159996275 + (CATAA)n Simple_repeat Simple_repeat 5 179 0 365 235 23 45 chrX 2603659 2603791 -159996139 + (CATAG)n Simple_repeat Simple_repeat 4 132 0 361 288 117 30 chrX 2603961 2604260 -159995670 - MER115 DNA AcHobo -17 676 352 305 327 18 9 chrX 2604614 2604724 -159995206 - MER115 DNA AcHobo -425 268 158 491 103 75 46 chrX 2604947 2605121 -159994809 + (TATAA)n Simple_repeat Simple_repeat 2 180 0 1688 160 10 70 chrX 2605583 2605896 -159994034 - AluJo SINE Alu -18 294 1 195 42 0 0 chrX 2606054 2606078 -159993852 + (GAAA)n Simple_repeat Simple_repeat 2 25 0 607 155 0 39 chrX 2606310 2606439 -159993491 + L1MB5 LINE L1 5860 5983 -191 25 31 0 0 chrX 2606479 2606511 -159993419 + AT_rich Low_complexity Low_complexity 1 32 0 976 171 28 0 chrX 2606516 2606697 -159993233 + L1MB5 LINE L1 5980 6165 -9 769 136 36 7 chrX 2606857 2606997 -159992933 - L1PA16 LINE L1 -304 5862 5719 295 50 0 0 chrX 2606995 2607035 -159992895 + L1PA15 LINE L1 5827 5866 -299 * 913 133 7 0 chrX 2607179 2607330 -159992600 + L1PA15 LINE L1 5910 6061 -104 520 298 70 26 chrX 2607663 2608079 -159991851 + L1MC/D LINE L1 5284 5717 -2325 191 306 102 46 chrX 2608432 2608449 -159991481 - L2 LINE L2 -2 3311 3296 1606 171 55 47 chrX 2608449 2608811 -159991119 + MER47A DNA MER2_type 1 365 -1 191 306 102 46 chrX 2608811 2608901 -159991029 - L2 LINE L2 -17 3296 3198 1289 144 0 0 chrX 2608938 2609126 -159990804 - AluJb SINE Alu -4 308 121 1406 182 31 35 chrX 2609810 2610068 -159989862 + AluJo SINE Alu 25 281 -31 213 154 0 0 chrX 2610086 2610125 -159989805 + GA-rich Low_complexity Low_complexity 2 40 0 24 0 0 0 chrX 2610214 2610238 -159989692 + AT_rich Low_complexity Low_complexity 1 24 0 36 70 0 0 chrX 2610317 2610388 -159989542 + AT_rich Low_complexity Low_complexity 1 71 0 1085 174 58 45 chrX 2611956 2612180 -159987750 - AluJb SINE Alu 0 312 86 1517 129 0 18 chrX 2612180 2612404 -159987526 - AluJo SINE Alu -92 220 1 1186 148 6 9 chrX 2612678 2612904 -159987026 + MLT1B LTR MaLR 167 396 0 1326 115 46 0 chrX 2612904 2613121 -159986809 + MLT1B LTR MaLR 158 384 -6 396 188 42 0 chrX 2613436 2613532 -159986398 - L1MA9 LINE L1 -22 6290 6191 807 178 27 7 chrX 2613593 2613739 -159986191 + AluJb SINE Alu 134 282 -30 381 58 0 0 chrX 2613742 2613794 -159986136 + (TC)n Simple_repeat Simple_repeat 1 52 0 402 108 0 0 chrX 2613794 2613859 -159986071 + (TA)n Simple_repeat Simple_repeat 2 66 0 335 306 56 20 chrX 2613873 2614069 -159985861 + HERVL LTR ERVL 2730 2932 -2722 1297 294 42 8 chrX 2614081 2614465 -159985465 + MER70B LTR ERVL 4 400 -178 387 0 0 0 chrX 2617008 2617051 -159982879 + (TA)n Simple_repeat Simple_repeat 1 43 0 987 180 9 18 chrX 2617532 2617749 -159982181 + L1MB2 LINE L1 5949 6163 -8 2973 81 26 71 chrX 2618021 2618116 -159981814 + L1PB1 LINE L1 5679 5777 -374 351 0 0 0 chrX 2618116 2618155 -159981775 + (CA)n Simple_repeat Simple_repeat 2 40 0 2973 81 26 71 chrX 2618155 2618554 -159981376 + L1PB1 LINE L1 5777 6151 0 1543 193 21 17 chrX 2618723 2619013 -159980917 + AluJb SINE Alu 1 291 -21 1268 179 112 166 chrX 2620075 2620243 -159979687 - LTR8A LTR ERV1 0 727 551 3206 123 16 12 chrX 2620243 2620754 -159979176 + MER75 DNA T2_type 2 514 0 1268 179 112 166 chrX 2620754 2621354 -159978576 - LTR8A LTR ERV1 -176 551 1 3056 180 56 3 chrX 2621720 2622310 -159977620 + LTR26E LTR ERV1 2 622 0 1241 160 106 83 chrX 2622536 2622923 -159977007 - LTR8A LTR ERV1 0 727 332 323 183 28 14 chrX 2622925 2622996 -159976934 + MER84 LTR ERVI 3 74 -433 2700 142 76 6 chrX 2622996 2623469 -159976461 + MER84 LTR ERV1 2 507 0 1926 129 18 29 chrX 2623469 2623552 -159976378 - LTR8A LTR ERV1 -391 336 254 2806 81 3 16 chrX 2623552 2623921 -159976009 - THE1B LTR MaLR 0 364 1 1926 129 18 29 chrX 2623921 2624177 -159975753 - LTR8A LTR ERV1 -473 254 1 424 171 0 0 chrX 2624412 2624488 -159975442 + L1PA10 LINE L1 6092 6167 -1 2236 114 3 0 chrX 2624499 2624806 -159975124 + AluSx SINE Alu 3 310 -2 579 133 51 0 chrX 2625042 2625140 -159974790 - LTR8A LTR ERV1 -624 103 1 424 171 0 0 chrX 2625376 2625452 -159974478 + L1PA10 LINE L1 6092 6167 -1 2067 136 3 0 chrX 2625463 2625772 -159974158 + AluSx SINE Alu 3 312 0 476 272 71 48 chrX 2627365 2627633 -159972297 + L1M4 LINE L1 2136 2409 -3737 2106 114 28 0 chrX 2628671 2628960 -159970970 + AluSq SINE Alu 1 297 -16 692 286 82 68 chrX 2628972 2629126 -159970804 - MLT1G1 LTR MaLR -1 554 404 2851 186 14 80 chrX 2629126 2629863 -159970067 + LTR8 LTR ERV1 4 691 0 692 286 82 68 chrX 2629863 2630266 -159969664 - MLT1G1 LTR MaLR -151 404 16 24 53 0 0 chrX 2630585 2630623 -159969307 + AT_rich Low_complexity Low_complexity 1 38 0 301 279 82 71 chrX 2630632 2630699 -159969231 + L1M4 LINE L1 5106 5171 -975 2084 134 0 0 chrX 2630699 2630990 -159968940 + AluSx SINE Alu 7 297 -15 301 279 82 71 chrX 2630990 2631216 -159968714 + L1M4 LINE L1 5171 5402 -744 2345 136 155 0 chrX 2631277 2631754 -159968176 + L1MA8 LINE L1 5600 6150 -141 1626 173 52 4 chrX 2631754 2632047 -159967883 + AluJo SINE Alu 1 306 0 22 0 0 0 chrX 2632169 2632191 -159967739 + AT_rich Low_complexity Low_complexity 1 22 0 988 231 57 102 chrX 2632340 2632398 -159967532 - MLT1C LTR MaLR 0 467 408 1746 202 3 0 chrX 2632398 2632700 -159967230 - AluJb SINE Alu -9 303 1 988 231 57 102 chrX 2632700 2633130 -159966800 - MLT1C LTR MaLR -59 408 1 45 19 0 0 chrX 2633208 2633260 -159966670 + AT_rich Low_complexity Low_complexity 1 52 0 1755 177 0 4 chrX 2633275 2633552 -159966378 - AluJo SINE Alu -22 290 15 24 0 0 0 chrX 2633689 2633713 -159966217 + AT_rich Low_complexity Low_complexity 1 24 0 1322 241 17 17 chrX 2636028 2636385 -159963545 + MLT1C LTR MaLR 7 363 -104 401 232 0 10 chrX 2636610 2636709 -159963221 + MLT1C LTR MaLR 365 462 -5 284 127 18 0 chrX 2636931 2636986 -159962944 + (ATTG)n Simple_repeat Simple_repeat 1 56 0 742 30 0 10 chrX 2637364 2637463 -159962467 + L1MA4A LINE L1 6196 6293 -10 23 0 0 0 chrX 2637464 2637487 -159962443 + AT_rich Low_complexity Low_complexity 1 23 0 686 262 47 83 chrX 2637539 2637912 -159962018 + Zaphod DNA AcHobo 16 374 -3657 204 67 0 0 chrX 2637912 2637942 -159961988 + (TTAA)n Simple_repeat Simple_repeat 3 32 0 686 262 47 83 chrX 2637942 2637977 -159961953 + Zaphod DNA AcHobo 374 409 -3622 2223 139 0 0 chrX 2638184 2638485 -159961445 + AluSx SINE Alu 1 301 -11 397 289 20 0 chrX 2638486 2638635 -159961295 + Zaphod DNA AcHobo 445 596 -3435 248 291 19 19 chrX 2638635 2638738 -159961192 + (TATG)n Simple_repeat Simple_repeat 1 103 0 24 0 0 0 chrX 2638882 2638906 -159961024 + AT_rich Low_complexity Low_complexity 1 24 0 248 194 0 65 chrX 2639077 2639139 -159960791 + MER58A DNA MER1_type 29 86 -21 243 0 0 0 chrX 2639139 2639166 -159960764 + (T)n Simple_repeat Simple_repeat 1 27 0 359 46 93 33 chrX 2639595 2639746 -159960184 + (TA)n Simple_repeat Simple_repeat 2 161 0 264 143 0 0 chrX 2639746 2639788 -159960142 - AluJ/FLAM SINE Alu -244 58 17 27 0 0 0 chrX 2639847 2639874 -159960056 + AT_rich Low_complexity Low_complexity 1 27 0 233 66 66 33 chrX 2639913 2639974 -159959956 + (TATAG)n Simple_repeat Simple_repeat 2 64 0 319 154 65 18 chrX 2639988 2640157 -159959773 + (TTATA)n Simple_repeat Simple_repeat 3 179 0 292 161 0 43 chrX 2640258 2640351 -159959579 + (TTATA)n Simple_repeat Simple_repeat 2 90 0 803 189 78 15 chrX 2641786 2641992 -159957938 + MER20 DNA MER1_type 1 219 0 879 229 57 0 chrX 2643685 2643895 -159956035 - MLT1A1 LTR MaLR 0 365 144 3640 160 70 89 chrX 2643912 2644094 -159955836 + MER21A LTR ERV1 5 189 -742 2015 159 3 0 chrX 2644094 2644402 -159955528 - AluJb SINE Alu -3 309 1 3640 160 70 89 chrX 2644402 2645138 -159954792 + MER21A LTR ERV1 189 905 -26 846 124 7 0 chrX 2645180 2645317 -159954613 - MLT1A1 LTR MaLR -227 138 1 308 136 0 0 chrX 2645573 2645632 -159954298 + L1PA15 LINE L1 6107 6165 0 2380 75 3 0 chrX 2645636 2645928 -159954002 + AluSp SINE Alu 1 293 -20 1312 228 80 13 chrX 2646119 2646492 -159953438 + MLT1C LTR MaLR 1 398 -69 41 48 0 0 chrX 2646503 2646565 -159953365 + AT_rich Low_complexity Low_complexity 1 62 0 30 69 0 0 chrX 2646666 2646724 -159953206 + AT_rich Low_complexity Low_complexity 1 58 0 73 52 0 0 chrX 2646771 2646886 -159953044 + AT_rich Low_complexity Low_complexity 1 115 0 73 76 0 0 chrX 2646954 2647111 -159952819 + AT_rich Low_complexity Low_complexity 1 157 0 217 195 46 11 chrX 2647152 2647239 -159952691 + (TTATA)n Simple_repeat Simple_repeat 3 92 0 207 150 20 88 chrX 2647319 2647466 -159952464 + (TTATA)n Simple_repeat Simple_repeat 1 137 0 55 89 0 0 chrX 2647494 2647640 -159952290 + AT_rich Low_complexity Low_complexity 1 146 0 279 169 0 17 chrX 2647690 2647749 -159952181 + MLT1B LTR MaLR 333 390 0 6795 184 149 23 chrX 2648685 2650244 -159949686 - MER52A LTR ERV1 0 1755 1 1845 144 42 23 chrX 2650288 2650642 -159949288 + MSTA LTR MaLR 1 361 -67 342 210 20 40 chrX 2650743 2650843 -159949087 + MLT1C LTR MaLR 368 465 -2 522 247 27 7 chrX 2650855 2651005 -159948925 + MER3 DNA MER1_type 52 204 -5 22 0 0 0 chrX 2652397 2652419 -159947511 + AT_rich Low_complexity Low_complexity 1 22 0 234 0 0 0 chrX 2652444 2652470 -159947460 + (T)n Simple_repeat Simple_repeat 1 26 0 3130 128 4 0 chrX 2653084 2653576 -159946354 + MER75 DNA T2_type 1 494 -20 2091 241 95 40 chrX 2653753 2654534 -159945396 - LTR1B LTR ERV1 0 826 3 740 248 13 9 chrX 2654552 2654782 -159945148 + MER33 DNA MER1_type 10 240 -84 576 233 16 0 chrX 2654787 2654916 -159945014 - MLT1C LTR MaLR -6 461 331 25 31 0 0 chrX 2655517 2655549 -159944381 + AT_rich Low_complexity Low_complexity 1 32 0 7622 22 7 0 chrX 2656149 2657508 -159942422 - L1PA4 LINE L1 -2 6153 4790 29 101 0 0 chrX 2657871 2657970 -159941960 + AT_rich Low_complexity Low_complexity 1 99 0 480 209 0 0 chrX 2657981 2658086 -159941844 + L1MB4 LINE L1 6066 6170 -10 885 207 15 0 chrX 2658093 2658291 -159941639 + L1MA7 LINE L1 6055 6255 -36 353 280 100 72 chrX 2659007 2659368 -159940562 + L2 LINE L2 833 1203 -2111 2805 145 21 53 chrX 2659743 2660273 -159939657 + L1PA16 LINE L1 5654 6166 0 1916 235 14 6 chrX 2662076 2662561 -159937369 - L1MB5 LINE L1 -68 6106 5618 526 244 103 0 chrX 2662852 2663008 -159936922 - L1MB5 LINE L1 -557 5623 5452 237 65 0 0 chrX 2663615 2663646 -159936284 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 1569 157 35 35 chrX 2663651 2663799 -159936131 - AluJo SINE Alu -26 286 136 2312 105 0 0 chrX 2663799 2664105 -159935825 - AluSx SINE Alu -6 306 1 1569 157 35 35 chrX 2664105 2664242 -159935688 - AluJo SINE Alu -175 137 1 220 189 38 0 chrX 2664295 2664348 -159935582 + (TA)n Simple_repeat Simple_repeat 1 55 0 29 28 0 0 chrX 2664386 2664422 -159935508 + AT_rich Low_complexity Low_complexity 1 36 0 1761 203 11 34 chrX 2665227 2665283 -159934647 - MLT2B1 LTR ERVL 0 520 464 2467 178 45 0 chrX 2665283 2665745 -159934185 + L1PB4 LINE L1 5670 6152 -4 1761 203 11 34 chrX 2665745 2666170 -159933760 - MLT2B1 LTR ERVL -56 464 1 25 31 0 0 chrX 2666961 2666993 -159932937 + AT_rich Low_complexity Low_complexity 1 32 0 864 205 0 0 chrX 2667209 2667370 -159932560 - AluJb SINE Alu -15 297 137 441 299 40 70 chrX 2667546 2667917 -159932013 - L1M4 LINE L1 -2998 3148 2789 308 152 0 0 chrX 2668029 2668075 -159931855 - MSTA LTR MaLR -382 46 1 277 260 39 0 chrX 2668077 2668154 -159931776 + MER20 DNA MER1_type 139 218 -1 269 265 10 49 chrX 2668402 2668504 -159931426 - MIR SINE MIR -71 191 94 2306 119 0 0 chrX 2668716 2669028 -159930902 + AluSx SINE Alu 1 312 0 4938 110 29 89 chrX 2669037 2669334 -159930596 + Tigger3(Golem) DNA MER2_type 1 314 -2715 1894 166 0 13 chrX 2669334 2669642 -159930288 - AluJb SINE Alu -8 304 1 4938 110 29 89 chrX 2669642 2669977 -159929953 + Tigger3(Golem) DNA MER2_type 314 667 -2362 755 173 0 15 chrX 2669977 2670110 -159929820 + FLAM_C SINE Alu 1 131 -2 4938 110 29 89 chrX 2670110 2670766 -159929164 + Tigger3(Golem) DNA MER2_type 667 3029 0 401 185 25 38 chrX 2670766 2670923 -159929007 + (TA)n Simple_repeat Simple_repeat 1 155 0 216 92 46 46 chrX 2670951 2671016 -159928914 + (TA)n Simple_repeat Simple_repeat 1 65 0 322 114 0 0 chrX 2671016 2671060 -159928870 - MER6B DNA MER2_type 0 210 167 180 111 0 0 chrX 2671264 2671291 -159928639 + (CA)n Simple_repeat Simple_repeat 2 28 0 244 244 42 42 chrX 2671297 2671465 -159928465 + (TATATG)n Simple_repeat Simple_repeat 5 172 0 * 319 166 36 50 chrX 2671353 2671492 -159928438 + (TA)n Simple_repeat Simple_repeat 1 137 0 2320 145 2 28 chrX 2672277 2672677 -159927253 - MLT1B LTR MaLR 0 390 1 1874 144 32 0 chrX 2672809 2673148 -159926782 + L1MA5 LINE L1 5946 6295 -5 288 53 0 0 chrX 2673421 2673459 -159926471 + (CA)n Simple_repeat Simple_repeat 2 39 0 818 161 0 83 chrX 2675257 2675449 -159924481 + MLT1C LTR MaLR 1 176 -291 1383 146 4 0 chrX 2675452 2675685 -159924245 - MLT1B LTR MaLR -126 264 31 1046 165 0 54 chrX 2676024 2676248 -159923682 - L1MA9 LINE L1 -93 6219 6008 842 191 6 6 chrX 2676249 2676417 -159923513 - MLT1B LTR MaLR -210 180 13 326 343 76 46 chrX 2676459 2676853 -159923077 - HERV16 LTR ERVL -2793 2203 1905 201 159 0 0 chrX 2677704 2677748 -159922182 + (CAA)n Simple_repeat Simple_repeat 2 45 0 272 338 0 0 chrX 2677987 2678067 -159921863 - HERV16 LTR ERVL -4834 930 851 1732 135 8 8 chrX 2678375 2678642 -159921288 + AluSx SINE Alu 1 267 -45 323 167 0 14 chrX 2680988 2681049 -159918881 + (TA)n Simple_repeat Simple_repeat 1 62 -9 878 196 70 15 chrX 2681049 2681248 -159918682 + MER6B DNA MER2_type 1 210 0 323 167 0 14 chrX 2681248 2681258 -159918672 + (TA)n Simple_repeat Simple_repeat 62 71 0 241 194 69 28 chrX 2681380 2681452 -159918478 - L1MC4 LINE L1 -1339 6703 6629 251 384 53 30 chrX 2682440 2682573 -159917357 + L2 LINE L2 3129 3264 -8 389 200 29 122 chrX 2683164 2683369 -159916561 - MER53 DNA DNA -2 187 2 1594 170 4 4 chrX 2684789 2685054 -159914876 + AluJb SINE Alu 3 267 -45 345 331 139 14 chrX 2685159 2685582 -159914348 + L1MC4a LINE L1 4767 5242 -904 1342 258 100 67 chrX 2685682 2686705 -159913225 + L1MC4a LINE L1 5363 6419 -1389 546 217 35 7 chrX 2686706 2686849 -159913081 + L1MC4 LINE L1 7731 7877 -165 365 219 39 70 chrX 2686982 2687110 -159912820 + L1MC4 LINE L1 7911 8034 -8 3214 129 20 0 chrX 2687189 2687685 -159912245 + MER84 LTR ERV1 2 507 0 220 271 0 0 chrX 2688171 2688220 -159911710 + (TG)n Simple_repeat Simple_repeat 1 49 0 27 0 0 0 chrX 2688517 2688544 -159911386 + AT_rich Low_complexity Low_complexity 1 27 0 21 71 0 0 chrX 2688586 2688628 -159911302 + AT_rich Low_complexity Low_complexity 1 42 0 25 0 0 0 chrX 2688642 2688667 -159911263 + AT_rich Low_complexity Low_complexity 1 25 0 21 71 0 0 chrX 2689133 2689175 -159910755 + AT_rich Low_complexity Low_complexity 1 42 0 1883 173 127 2 chrX 2689480 2689890 -159910040 - MER65C LTR ERV1 0 461 1 3252 194 55 52 chrX 2690211 2690544 -159909386 - Charlie1a DNA MER1_type -1307 1454 1124 1616 143 0 109 chrX 2690544 2690894 -159909036 - AluJo SINE Alu 0 312 1 3252 194 55 52 chrX 2690894 2691548 -159908382 - Charlie1a DNA MER1_type -1637 1124 464 888 224 72 89 chrX 2691541 2691890 -159908040 - Charlie1a DNA MER1_type -1112 343 1 * 250 202 71 60 chrX 2692048 2692132 -159907798 - L2 LINE L2 -2 3311 3227 852 160 0 14 chrX 2693004 2693148 -159906782 + FRAM SINE Alu 25 166 -10 48 0 0 0 chrX 2694045 2694093 -159905837 + AT_rich Low_complexity Low_complexity 1 48 0 2236 101 11 46 chrX 2694093 2694460 -159905470 + MER4A LTR ERV1 3 356 -308 2026 118 3 43 chrX 2694498 2694821 -159905109 + MER4A LTR ERV1 355 664 0 822 189 12 37 chrX 2695293 2695457 -159904473 + MLT1A2 LTR MaLR 2 161 -213 676 82 70 3 chrX 2695510 2695833 -159904097 + CT-rich Low_complexity Low_complexity 1 344 0 366 139 39 8 chrX 2695845 2695974 -159903956 + CT-rich Low_complexity Low_complexity 2 134 0 909 68 0 0 chrX 2695975 2696093 -159903837 - AluY SINE Alu -14 297 180 26 0 0 0 chrX 2696223 2696249 -159903681 + AT_rich Low_complexity Low_complexity 1 26 0 403 121 0 0 chrX 2696249 2696307 -159903623 - LTR29 LTR ERV1 -66 556 499 222 287 11 0 chrX 2697082 2697169 -159902761 + (TA)n Simple_repeat Simple_repeat 1 88 0 1202 164 5 0 chrX 2698796 2698991 -159900939 - AluSg/x SINE Alu -9 300 105 483 253 53 95 chrX 2699043 2699423 -159900507 - LTR37B LTR ERV1 -100 368 5 520 148 17 38 chrX 2700175 2700344 -159899586 + AluJo SINE Alu 81 308 -4 50 90 0 0 chrX 2700354 2700488 -159899442 + AT_rich Low_complexity Low_complexity 1 134 0 416 256 67 3 chrX 2700756 2700882 -159899048 - MIR SINE MIR -43 165 32 1114 220 48 34 chrX 2703138 2703406 -159896524 - L1PA16 LINE L1 -16 6150 5879 2440 70 0 3 chrX 2703924 2704224 -159895706 + AluSc SINE Alu 1 299 -10 2472 126 86 14 chrX 2704425 2704846 -159895084 + L1PA16 LINE L1 5712 6162 -4 22 56 0 0 chrX 2705680 2705716 -159894214 + AT_rich Low_complexity Low_complexity 1 36 0 1267 277 60 23 chrX 2705893 2706410 -159893520 - L1ME1 LINE L1 -44 6191 5656 3530 122 19 13 chrX 2706411 2706936 -159892994 - MER1A DNA MER1_type -1 528 1 1047 231 46 8 chrX 2706936 2707388 -159892542 - L1ME1 LINE L1 -572 5663 5197 1318 220 15 61 chrX 2707421 2707893 -159892037 - L1ME1 LINE L1 -4041 2355 1906 625 106 30 8 chrX 2708344 2708476 -159891454 + (TAGA)n Simple_repeat Simple_repeat 4 138 0 21 0 0 0 chrX 2708522 2708543 -159891387 + AT_rich Low_complexity Low_complexity 1 21 0 1837 117 0 25 chrX 2709282 2709564 -159890366 - MER4A LTR ERV1 0 664 390 2024 100 19 10 chrX 2711350 2711660 -159888270 - L1PB1 LINE L1 -115 6036 5724 225 0 0 0 chrX 2711673 2711700 -159888230 - MADE1 DNA Mariner -49 31 5 967 309 102 43 chrX 2711712 2712598 -159887332 - L2 LINE L2 -35 3278 2328 510 116 0 116 chrX 2712832 2712857 -159887073 + L1MA4 LINE L1 6028 6054 -246 1264 216 40 33 chrX 2712857 2713158 -159886772 + AluJo SINE Alu 1 303 -9 510 116 0 116 chrX 2713158 2713253 -159886677 + L1MA4 LINE L1 6054 6134 -166 1923 112 9 31 chrX 2714391 2714525 -159885405 + L1PB1 LINE L1 5478 5613 -538 1930 168 19 67 chrX 2714525 2715001 -159884929 - MLT2A2 LTR ERVL 0 453 1 1923 112 9 31 chrX 2715001 2715188 -159884742 + L1PB1 LINE L1 5613 5792 -359 276 149 0 0 chrX 2715188 2715235 -159884695 + (CA)n Simple_repeat Simple_repeat 2 48 0 418 100 0 0 chrX 2715235 2715295 -159884635 + L1PB1 LINE L1 5782 5841 -310 2482 117 5 0 chrX 2715299 2715667 -159884263 + L1PB1 LINE L1 5782 6151 0 281 250 11 45 chrX 2716023 2716111 -159883819 + MLT1I LTR MaLR 316 400 -9 255 370 84 30 chrX 2716173 2716541 -159883389 - L2 LINE L2 -2230 1084 697 937 323 105 45 chrX 2716546 2716665 -159883265 - L2 LINE L2 -2487 827 717 362 287 115 19 chrX 2716665 2716822 -159883108 + MER5B DNA MER1_type 3 174 -4 937 323 105 45 chrX 2716822 2717302 -159882628 - L2 LINE L2 -2597 717 192 2163 122 0 0 chrX 2718009 2718303 -159881627 - AluSq SINE Alu -17 296 3 22 56 0 0 chrX 2718976 2719012 -159880918 + AT_rich Low_complexity Low_complexity 1 36 0 346 154 33 0 chrX 2720324 2720415 -159879515 + (TAGG)n Simple_repeat Simple_repeat 1 94 0 479 208 11 22 chrX 2720477 2720655 -159879275 + (TAGG)n Simple_repeat Simple_repeat 3 178 0 188 203 27 0 chrX 2720667 2720741 -159879189 + (TAGG)n Simple_repeat Simple_repeat 4 79 0 609 171 17 17 chrX 2720787 2720962 -159878968 + (TAGG)n Simple_repeat Simple_repeat 4 178 0 361 231 12 6 chrX 2721001 2721174 -159878756 + (TAGG)n Simple_repeat Simple_repeat 1 174 0 255 248 0 0 chrX 2721202 2721307 -159878623 + (TAGG)n Simple_repeat Simple_repeat 2 106 0 378 235 12 18 chrX 2721401 2721567 -159878363 + (TAGG)n Simple_repeat Simple_repeat 2 166 0 383 253 21 11 chrX 2721832 2721927 -159878003 + MER81 DNA DNA 18 113 -1 565 192 50 8 chrX 2722386 2722506 -159877424 - L1PB3 LINE L1 -93 6061 5937 2126 126 86 8 chrX 2722804 2723176 -159876754 - MER57A LTR ERV1 0 403 3 645 155 0 0 chrX 2724710 2724813 -159875117 + FLAM_A SINE Alu 30 132 -10 237 289 0 0 chrX 2725213 2725265 -159874665 + L2 LINE L2 3214 3265 -7 22 0 0 0 chrX 2726336 2726358 -159873572 + AT_rich Low_complexity Low_complexity 1 22 0 6065 107 11 21 chrX 2726358 2727299 -159872631 - L1MA3 LINE L1 -1 6304 5374 659 136 8 76 chrX 2727358 2727490 -159872440 + MER31A LTR ERV1 2 124 -361 579 277 20 66 chrX 2727491 2727841 -159872089 + L1MC/D LINE L1 2339 2672 -3474 1757 149 7 20 chrX 2727857 2728158 -159871772 - MER61A LTR ERV1 0 343 47 1681 271 69 66 chrX 2728162 2729334 -159870596 + L1MC/D LINE L1 2961 4136 -2010 333 189 37 37 chrX 2729349 2729644 -159870286 + (TAGA)n Simple_repeat Simple_repeat 1 295 0 1823 290 76 32 chrX 2729665 2731061 -159868869 + L1MC/D LINE L1 4179 5644 -572 1594 155 10 37 chrX 2731515 2731812 -159868118 - AluJo SINE Alu -18 294 6 189 74 0 0 chrX 2732171 2732198 -159867732 + (CA)n Simple_repeat Simple_repeat 2 28 0 877 72 0 40 chrX 2732619 2732744 -159867186 - L1M1 LINE L1 -524 5778 5659 2814 90 26 9 chrX 2732744 2733165 -159866765 + L1MA1 LINE L1 5873 6301 -1 21 0 0 0 chrX 2733356 2733377 -159866553 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chrX 2733915 2733936 -159865994 + AT_rich Low_complexity Low_complexity 1 21 0 27 49 0 0 chrX 2734521 2734562 -159865368 + AT_rich Low_complexity Low_complexity 1 41 0 3743 164 47 12 chrX 2735089 2735789 -159864141 + L1MA4 LINE L1 5505 6236 -64 1800 141 61 30 chrX 2735789 2736152 -159863778 - THE1C LTR MaLR -1 374 1 3743 164 47 12 chrX 2736152 2736215 -159863715 + L1MA4 LINE L1 6236 6295 -5 233 159 0 45 chrX 2736661 2736705 -159863225 - L2 LINE L2 0 3313 3272 222 37 0 0 chrX 2736717 2736744 -159863186 + (TC)n Simple_repeat Simple_repeat 2 28 0 1311 167 25 0 chrX 2737127 2737367 -159862563 - L1MA4 LINE L1 -461 5839 5594 353 313 107 58 chrX 2737812 2738205 -159861725 - MLT1J LTR MaLR -6 505 94 236 164 0 36 chrX 2738448 2738503 -159861427 + (TTAA)n Simple_repeat Simple_repeat 3 55 0 202 292 10 73 chrX 2739111 2739207 -159860723 - L2 LINE L2 -1 3271 3182 331 244 27 0 chrX 2739259 2739351 -159860579 - FLAM SINE Alu -6 127 53 511 125 45 28 chrX 2739383 2739559 -159860371 + (TCTA)n Simple_repeat Simple_repeat 2 180 0 509 76 57 25 chrX 2739614 2739771 -159860159 + (TCTA)n Simple_repeat Simple_repeat 3 164 0 753 87 23 29 chrX 2739787 2739960 -159859970 + (TCTA)n Simple_repeat Simple_repeat 3 174 0 215 325 24 0 chrX 2740271 2740354 -159859576 + GA-rich Low_complexity Low_complexity 6 90 0 279 303 67 0 chrX 2740464 2740553 -159859377 - MIR SINE MIR -111 151 57 1538 201 38 3 chrX 2740904 2741197 -159858733 - AluJo SINE Alu -9 303 1 22 0 0 0 chrX 2741199 2741221 -159858709 + AT_rich Low_complexity Low_complexity 1 22 0 337 273 66 62 chrX 2741584 2741811 -159858119 - L2 LINE L2 0 3313 3086 1105 54 15 25 chrX 2742300 2742508 -159857422 + (TAGA)n Simple_repeat Simple_repeat 1 205 0 682 99 60 12 chrX 2742548 2742956 -159856974 + (TAGA)n Simple_repeat Simple_repeat 1 427 0 733 127 39 8 chrX 2743005 2743269 -159856661 + (TAGA)n Simple_repeat Simple_repeat 1 272 0 369 0 0 0 chrX 2743596 2743637 -159856293 + (TG)n Simple_repeat Simple_repeat 2 42 0 239 196 18 0 chrX 2743649 2743705 -159856225 + (TA)n Simple_repeat Simple_repeat 2 58 0 2267 157 23 43 chrX 2743718 2744158 -159855772 - Tigger2a DNA MER2_type 0 434 4 213 94 0 0 chrX 2744158 2744190 -159855740 + (TCTA)n Simple_repeat Simple_repeat 4 35 0 366 281 75 75 chrX 2745123 2745390 -159854540 + MLT1L LTR MaLR 1 267 -348 571 210 17 0 chrX 2745963 2746082 -159853848 - MLT1B LTR MaLR -264 126 6 297 68 0 0 chrX 2746082 2746126 -159853804 + (CA)n Simple_repeat Simple_repeat 2 45 0 1907 123 39 75 chrX 2746886 2747275 -159852655 - THE1C LTR MaLR 0 375 1 1756 242 43 2 chrX 2747456 2747877 -159852053 + MLT1C LTR MaLR 1 438 -29 222 208 0 0 chrX 2748618 2748666 -159851264 + (TG)n Simple_repeat Simple_repeat 1 48 0 206 121 0 0 chrX 2749281 2749314 -159850616 + (TC)n Simple_repeat Simple_repeat 2 34 0 261 0 0 0 chrX 2749582 2749611 -159850319 + (TG)n Simple_repeat Simple_repeat 1 29 0 1904 173 34 3 chrX 2749863 2750216 -159849714 - MLT1A1 LTR MaLR -1 364 1 350 278 68 25 chrX 2750297 2750459 -159849471 + MLT1G LTR MaLR 5 173 -376 1220 228 80 46 chrX 2750471 2750909 -159849021 + MLT1C LTR MaLR 15 467 0 1143 253 85 27 chrX 2750909 2751308 -159848622 + MLT1G LTR MaLR 166 549 0 292 125 21 0 chrX 2752172 2752220 -159847710 - MER3 DNA MER1_type -6 203 155 1740 136 75 59 chrX 2752243 2752570 -159847360 + L1MB3 LINE L1 5542 5822 -361 1909 184 0 0 chrX 2752570 2752880 -159847050 + AluJo SINE Alu 3 312 0 1740 136 75 59 chrX 2752880 2752933 -159846997 + L1MB3 LINE L1 5822 5873 -310 1909 184 18 3 chrX 2752935 2753272 -159846658 + MER7A DNA MER2_type 7 346 0 1304 132 0 5 chrX 2753272 2753477 -159846453 + L1MB3 LINE L1 5905 6108 -75 1466 93 49 26 chrX 2753479 2753705 -159846225 + L1PB4 LINE L1 5686 5916 -240 1766 117 89 7 chrX 2753809 2754100 -159845830 + THE1B LTR MaLR 50 364 0 239 348 43 14 chrX 2754173 2754311 -159845619 - MER3 DNA MER1_type -62 147 6 1954 157 0 0 chrX 2754858 2755173 -159844757 + AluSx SINE Alu 1 315 0 277 198 26 99 chrX 2755607 2756532 -159843398 + (CATATA)n Simple_repeat Simple_repeat 3 180 0 386 217 49 14 chrX 2755665 2755733 -159844197 + (TA)n Simple_repeat Simple_repeat 2 66 -83 2255 166 14 40 chrX 2755733 2755800 -159844130 - Tigger2a DNA MER2_type -2274 434 367 2063 128 3 0 chrX 2755800 2756089 -159843841 - AluSx SINE Alu -22 290 1 2255 166 14 40 chrX 2756089 2756467 -159843463 - Tigger2a DNA MER2_type -2341 367 1 386 217 49 14 chrX 2756467 2756541 -159843389 + (TA)n Simple_repeat Simple_repeat 66 149 0 183 281 320 8 chrX 2756779 2756907 -159843023 + MER5A DNA MER1_type 9 176 -13 922 146 18 0 chrX 2757999 2758231 -159841699 + GA-rich Low_complexity Low_complexity 1 236 0 1137 115 75 0 chrX 2758889 2759089 -159840841 - L1MA5A LINE L1 -10 6287 6073 2839 95 48 83 chrX 2759089 2759585 -159840345 - MER1A DNA MER1_type -2 527 49 462 111 0 0 chrX 2759588 2759660 -159840270 - L1MA5A LINE L1 -213 6084 6013 1031 189 0 0 chrX 2759962 2760126 -159839804 - AluJb SINE Alu -13 299 136 4192 91 22 11 chrX 2760469 2761099 -159838831 + L1PB2 LINE L1 5515 6151 0 22 0 0 0 chrX 2761511 2761533 -159838397 + AT_rich Low_complexity Low_complexity 1 22 0 2449 82 0 3 chrX 2761843 2762146 -159837784 - AluSq SINE Alu -11 302 1 315 0 0 0 chrX 2762742 2762777 -159837153 + (TG)n Simple_repeat Simple_repeat 2 36 0 258 326 119 0 chrX 2762990 2763202 -159836728 - L1MC/D LINE L1 -532 5589 5492 239 161 18 0 chrX 2763360 2763416 -159836514 + (CA)n Simple_repeat Simple_repeat 2 58 0 260 345 0 0 chrX 2763458 2763600 -159836330 + T-rich Low_complexity Low_complexity 1 142 0 286 80 40 0 chrX 2763947 2763997 -159835933 + (TA)n Simple_repeat Simple_repeat 1 52 0 2313 129 35 7 chrX 2764088 2764491 -159835439 - L1MA5A LINE L1 -10 6287 5874 301 323 33 43 chrX 2764511 2764814 -159835116 - L1MEd LINE L1 -4910 1209 910 1943 109 0 0 chrX 2764889 2765185 -159834745 - AluSx SINE Alu 0 326 31 380 241 13 0 chrX 2765365 2765444 -159834486 + MER93a LTR ERV1 1 80 -322 1130 241 16 12 chrX 2765542 2765787 -159834143 + MER93a LTR ERV1 91 336 -66 482 170 0 40 chrX 2815864 2815964 -159783966 - AluJ/FLAM SINE Alu -214 98 3 598 219 26 0 chrX 2815987 2816138 -159783792 + L1MB7 LINE L1 6009 6163 -21 1997 142 0 0 chrX 2816195 2816512 -159783418 + L1PB4 LINE L1 5839 6155 -1 1792 229 53 25 chrX 2816774 2817284 -159782646 + MER68 LTR ERV1 28 551 -11 810 159 0 0 chrX 2817500 2817626 -159782304 + FLAM_C SINE Alu 1 126 -17 1683 197 0 25 chrX 2817636 2817956 -159781974 + AluJo SINE Alu 1 312 0 2845 161 10 2 chrX 2818555 2819065 -159780865 + L1PB4 LINE L1 5634 6147 -9 2218 132 0 39 chrX 2819244 2819585 -159780345 + L1PA13 LINE L1 5791 6117 -46 2037 159 24 11 chrX 2819585 2819955 -159779975 - THE1C LTR MaLR 0 375 1 2218 132 0 39 chrX 2819955 2819999 -159779931 + L1PA13 LINE L1 6117 6161 -2 2179 125 22 5 chrX 2819999 2820346 -159779584 + L1MA5A LINE L1 5925 6297 0 225 289 26 61 chrX 2820642 2820756 -159779174 - MER68 LTR ERV1 -75 487 378 518 240 0 0 chrX 2820795 2820916 -159779014 - MER68 LTR ERV1 -273 289 169 3775 183 19 3 chrX 2822170 2822919 -159777011 - L1PB4 LINE L1 -4 6152 5392 255 197 26 40 chrX 2823016 2823092 -159776838 + L1MB7 LINE L1 5472 5546 -628 2553 198 12 54 chrX 2823110 2823791 -159776139 + L1MB7 LINE L1 5520 6171 -13 1849 204 60 20 chrX 2824664 2825124 -159774806 - MLT2B1 LTR ERVL -20 472 12 319 77 19 19 chrX 2825190 2825242 -159774688 - L1PA16 LINE L1 -14 6152 6101 1095 233 12 6 chrX 2825342 2825664 -159774266 + L1 LINE L1 4285 4608 -1538 2179 159 14 23 chrX 2826693 2827120 -159772810 + LTR23 LTR ERV1 15 437 0 261 57 0 0 chrX 2827164 2827199 -159772731 + (CA)n Simple_repeat Simple_repeat 2 36 0 2194 130 0 0 chrX 2827395 2827696 -159772234 + AluSx SINE Alu 1 301 -11 430 267 32 12 chrX 2828013 2828210 -159771720 + MER93a LTR ERV1 198 398 -5 460 186 23 0 chrX 2829322 2829408 -159770522 + AluJb SINE Alu 44 131 -181 2057 104 43 0 chrX 2829413 2829693 -159770237 + AluSx SINE Alu 1 292 -20 30 59 0 0 chrX 2829695 2829746 -159770184 + AT_rich Low_complexity Low_complexity 1 51 0 519 205 0 0 chrX 2829762 2829889 -159770041 - L1MA8 LINE L1 -22 6269 6143 1990 148 127 16 chrX 2830248 2830633 -159769297 - MSTA LTR MaLR 0 428 1 998 164 28 9 chrX 2830785 2830998 -159768932 + L1MB7 LINE L1 5954 6170 -14 21 0 0 0 chrX 2831092 2831113 -159768817 + AT_rich Low_complexity Low_complexity 1 21 0 2568 67 0 3 chrX 2831324 2831636 -159768294 + AluY SINE Alu 1 311 0 221 167 19 0 chrX 2832064 2832118 -159767812 + CT-rich Low_complexity Low_complexity 2 56 0 1502 176 11 4 chrX 2832248 2832521 -159767409 + AluJo SINE Alu 1 275 -37 236 308 26 51 chrX 2832541 2832619 -159767311 - MIR3 SINE MIR -31 177 102 180 77 0 0 chrX 2833291 2833317 -159766613 + (T)n Simple_repeat Simple_repeat 1 26 0 3549 94 0 0 chrX 2833335 2833834 -159766096 - L1PA15 LINE L1 -82 6083 5585 1681 100 19 8 chrX 2833996 2834255 -159765675 - MER41D LTR ERV1 -295 262 1 2156 239 11 0 chrX 2834369 2834846 -159765084 - MER68 LTR ERV1 -4 558 77 994 223 29 71 chrX 2834855 2835237 -159764693 + MLT1A2 LTR MaLR 9 374 0 347 231 0 39 chrX 2835237 2835319 -159764611 - MER68 LTR ERV1 -484 78 1 595 218 6 46 chrX 2835388 2835494 -159764436 - LTR34 LTR ERV1 -4 695 597 3692 107 26 35 chrX 2835494 2836099 -159763831 - MER4A LTR ERV1 0 600 1 595 218 6 46 chrX 2836099 2836166 -159763764 - LTR34 LTR ERV1 -102 597 529 866 127 76 13 chrX 2836168 2836325 -159763605 - LTR34 LTR ERV1 -328 371 205 204 40 0 0 chrX 2837877 2837902 -159762028 + (CA)n Simple_repeat Simple_repeat 2 26 0 280 211 30 8 chrX 2837934 2838067 -159761863 + (TA)n Simple_repeat Simple_repeat 1 136 0 36 53 0 0 chrX 2838074 2838131 -159761799 + AT_rich Low_complexity Low_complexity 1 57 0 2386 161 57 0 chrX 2838658 2839094 -159760836 + LOR1b LTR ERV1 1 461 0 416 183 11 0 chrX 2840726 2840819 -159759111 + GA-rich Low_complexity Low_complexity 3 96 0 270 0 0 0 chrX 2841910 2841940 -159757990 + (CAAAA)n Simple_repeat Simple_repeat 1 30 0 2501 137 16 56 chrX 2842364 2842810 -159757120 - MSTA LTR MaLR 0 428 1 1374 107 11 10 chrX 2843353 2843607 -159756323 - Tigger2 DNA MER2_type -171 2547 3 3410 142 7 12 chrX 2843827 2844426 -159755504 - L1PB4 LINE L1 -3 6153 5558 2559 102 23 0 chrX 2844432 2844786 -159755144 + THE1B LTR MaLR 1 362 -2 3589 115 11 15 chrX 2845719 2846248 -159753682 + MER1A DNA MER1_type 1 527 0 366 287 0 0 chrX 2846630 2846731 -159753199 + MER5A DNA MER1_type 9 109 -80 180 0 0 0 chrX 2847596 2847616 -159752314 + (CAA)n Simple_repeat Simple_repeat 2 21 0 2171 98 30 3 chrX 2847801 2848097 -159751833 + AluSx SINE Alu 1 304 -8 1522 224 6 3 chrX 2848303 2848651 -159751279 + L1PA16 LINE L1 5796 6144 -22 1844 158 10 7 chrX 2849599 2849890 -159750040 + AluJo SINE Alu 1 292 -20 322 221 12 12 chrX 2849946 2850032 -159749898 - L1ME4a LINE L1 -70 6051 5966 331 132 88 0 chrX 2850104 2850172 -159749758 - L1PA16 LINE L1 0 6166 6093 1983 129 25 0 chrX 2850172 2850489 -159749441 + L1PA16 LINE L1 5771 6095 -71 422 158 184 44 chrX 2850646 2850804 -159749126 - MER45 DNA AcHobo 0 1581 1402 311 253 53 0 chrX 2850816 2850911 -159749019 - L1MA9 LINE L1 -32 6280 6181 2759 200 20 2 chrX 2850912 2851507 -159748423 - L1MA9 LINE L1 -230 6082 5477 715 199 78 15 chrX 2851510 2851716 -159748214 + L1 LINE L1 5063 5281 -865 1895 113 154 6 chrX 2851733 2852077 -159747853 - MSTA LTR MaLR -33 395 1 420 144 117 27 chrX 2852077 2852188 -159747742 + L1M LINE L1 5275 5395 -917 1370 184 65 16 chrX 2852188 2852509 -159747421 + MSTB1 LTR MaLR 1 337 -95 3711 81 2 2 chrX 2852640 2853132 -159746798 - LTR3b LTR ERVK -8 492 1 254 167 0 0 chrX 2853132 2853180 -159746750 - L1MA4 LINE L1 -217 6083 6036 1795 163 10 3 chrX 2853180 2853469 -159746461 + AluJo SINE Alu 5 295 -17 641 373 86 9 chrX 2853548 2853977 -159745953 - L2 LINE L2 -1689 1625 1164 476 315 51 35 chrX 2854165 2854422 -159745508 - L2 LINE L2 -2200 1114 854 560 211 0 0 chrX 2854499 2854622 -159745308 + L1MB4 LINE L1 6058 6180 0 1833 150 3 10 chrX 2854656 2854949 -159744981 + AluJo SINE Alu 1 291 -21 234 91 0 0 chrX 2854949 2854982 -159744948 + (GGA)n Simple_repeat Simple_repeat 1 33 0 1958 149 0 3 chrX 2856287 2856588 -159743342 - AluJb SINE Alu -8 304 5 314 195 49 12 chrX 2856768 2856850 -159743080 + MLT1I LTR MaLR 318 402 -7 2460 46 0 13 chrX 2856944 2857249 -159742681 + AluY SINE Alu 1 301 -10 297 0 0 0 chrX 2857355 2857388 -159742542 + (CA)n Simple_repeat Simple_repeat 2 34 0 998 68 28 11 chrX 2858638 2858814 -159741116 + (TAGA)n Simple_repeat Simple_repeat 1 179 0 248 167 46 42 chrX 2858858 2859083 -159740847 + (TAGA)n Simple_repeat Simple_repeat 1 226 0 392 124 46 52 chrX 2859101 2859254 -159740676 + (TAGA)n Simple_repeat Simple_repeat 3 154 0 512 55 22 22 chrX 2859320 2859411 -159740519 + (TAGA)n Simple_repeat Simple_repeat 2 92 0 2756 163 36 0 chrX 2860093 2860596 -159739334 + L1MB3 LINE L1 5653 6173 -10 194 0 0 37 chrX 2862352 2862379 -159737551 + (TTTTTG)n Simple_repeat Simple_repeat 2 27 0 26 30 0 0 chrX 2863077 2863110 -159736820 + AT_rich Low_complexity Low_complexity 1 33 0 3690 135 30 3 chrX 2863245 2863881 -159736049 + MER39B LTR ERV1 1 653 0 3731 106 12 9 chrX 2863917 2864481 -159735449 - L1PA16 LINE L1 -9 6157 5592 1187 162 194 20 chrX 2865073 2865320 -159734610 + AluJo SINE Alu 1 290 -12 348 164 0 0 chrX 2865320 2865387 -159734543 + G-rich Low_complexity Low_complexity 1 67 0 331 111 93 52 chrX 2865423 2865595 -159734335 + GA-rich Low_complexity Low_complexity 2 180 0 441 305 0 0 chrX 2865718 2865846 -159734084 - MER77 LTR ERV1 0 605 478 877 181 64 5 chrX 2865851 2866055 -159733875 - L1M2 LINE L1 -725 5587 5372 250 138 62 75 chrX 2866057 2866094 -159733836 + L1MA9 LINE L1 6234 6270 -42 1677 159 0 15 chrX 2866094 2866358 -159733572 + AluJb SINE Alu 35 294 -18 250 138 62 75 chrX 2866358 2866400 -159733530 + L1MA9 LINE L1 6270 6312 0 1274 261 55 60 chrX 2866479 2866966 -159732964 - MER77 LTR ERV1 -119 486 2 185 35 69 0 chrX 2868083 2868112 -159731818 + (TAAA)n Simple_repeat Simple_repeat 1 31 0 2392 108 13 35 chrX 2868158 2868530 -159731400 - THE1B LTR MaLR 0 364 1 1893 169 0 10 chrX 2868626 2868940 -159730990 + AluJb SINE Alu 1 311 -1 875 219 86 60 chrX 2869108 2869512 -159730418 - MLT1C LTR MaLR -6 618 45 278 266 32 13 chrX 2870413 2870571 -159729359 + (TATAA)n Simple_repeat Simple_repeat 2 162 0 215 224 19 28 chrX 2870527 2870634 -159729296 + (TTA)n Simple_repeat Simple_repeat 3 108 0 * 205 121 61 38 chrX 2870634 2870766 -159729164 + (TATAA)n Simple_repeat Simple_repeat 5 139 0 255 178 23 85 chrX 2870813 2870942 -159728988 + (TATAA)n Simple_repeat Simple_repeat 2 122 0 22 35 0 0 chrX 2871159 2871188 -159728742 + AT_rich Low_complexity Low_complexity 1 29 0 2159 109 46 57 chrX 2873045 2873413 -159726517 + THE1B LTR MaLR 1 364 0 288 53 0 0 chrX 2873420 2873458 -159726472 + (CAA)n Simple_repeat Simple_repeat 2 39 0 5059 130 14 1 chrX 2873462 2874292 -159725638 + L1PB4 LINE L1 5314 6154 -2 272 301 194 25 chrX 2875008 2875204 -159724726 - MIR SINE MIR -22 240 12 1775 173 0 10 chrX 2876126 2876426 -159723504 - AluJb SINE Alu -15 297 1 2348 160 17 72 chrX 2876666 2877209 -159722721 - L1MA7 LINE L1 -6 6285 5773 213 39 0 0 chrX 2878477 2878503 -159721427 + (CAAA)n Simple_repeat Simple_repeat 3 28 0 786 205 16 21 chrX 2878955 2879145 -159720785 - MER20 DNA MER1_type -1 218 30 248 194 0 90 chrX 2879130 2879197 -159720733 + MER20 DNA MER1_type 6 66 -153 * 198 0 0 0 chrX 2879374 2879396 -159720534 + (A)n Simple_repeat Simple_repeat 1 22 0 197 282 94 60 chrX 2880077 2880226 -159719704 + MER5B DNA MER1_type 19 172 -6 2060 141 0 3 chrX 2880453 2880752 -159719178 - AluSx SINE Alu -14 298 1 248 120 20 0 chrX 2880867 2880917 -159719013 + (TA)n Simple_repeat Simple_repeat 2 52 0 289 309 197 0 chrX 2881551 2881729 -159718201 + LTR16A1 LTR ERVL 245 457 0 3137 128 59 20 chrX 2881772 2882279 -159717651 + MER1A DNA MER1_type 1 527 0 68 48 0 0 chrX 2882371 2882474 -159717456 + AT_rich Low_complexity Low_complexity 1 103 0 1400 108 0 0 chrX 2882525 2882729 -159717201 - L1PA14 LINE L1 -1 6160 5957 180 275 11 110 chrX 2883194 2883285 -159716645 - MER5A DNA MER1_type -92 97 16 358 273 64 6 chrX 2883449 2883621 -159716309 + Charlie5 DNA MER1_type 553 734 -1878 4886 84 17 0 chrX 2883621 2884311 -159715619 - L1PA13 LINE L1 -23 6140 5439 920 239 42 72 chrX 2884311 2884713 -159715217 + Charlie5 DNA MER1_type 722 1111 -1501 180 0 0 0 chrX 2884912 2884932 -159714998 + (A)n Simple_repeat Simple_repeat 1 20 0 3374 100 13 7 chrX 2885427 2885967 -159713963 + MER41B LTR ERV1 1 543 -92 32 81 0 0 chrX 2886204 2886278 -159713652 + AT_rich Low_complexity Low_complexity 1 74 0 261 250 11 0 chrX 2886281 2886395 -159713535 + (TA)n Simple_repeat Simple_repeat 1 115 0 3900 154 4 1 chrX 2886464 2887140 -159712790 + L1PA15 LINE L1 5462 6139 -26 334 98 0 0 chrX 2888099 2888160 -159711770 - L1MA2 LINE L1 0 6304 6244 434 189 55 24 chrX 2888473 2888600 -159711330 - MER53 DNA DNA -36 153 23 2475 168 8 3 chrX 2889074 2889573 -159710357 + L1PA16 LINE L1 5616 6117 -39 3731 128 24 0 chrX 2889674 2890297 -159709633 + L1PA13 LINE L1 5552 6188 0 540 152 0 22 chrX 2890323 2890415 -159709515 + AluJo SINE Alu 1 90 -222 718 98 9 0 chrX 2890417 2890529 -159709401 - L1PA13 LINE L1 -165 5998 5886 1489 136 0 21 chrX 2890529 2890764 -159709166 + AluJo SINE Alu 82 311 -1 213 100 60 0 chrX 2890798 2890848 -159709082 + GA-rich Low_complexity Low_complexity 1 53 0 233 221 15 0 chrX 2891502 2891570 -159708360 + (CATA)n Simple_repeat Simple_repeat 2 70 0 40 83 0 0 chrX 2891612 2891708 -159708222 + AT_rich Low_complexity Low_complexity 1 96 0 23 0 0 0 chrX 2891746 2891769 -159708161 + AT_rich Low_complexity Low_complexity 1 23 0 293 216 43 14 chrX 2891798 2891937 -159707993 + (TA)n Simple_repeat Simple_repeat 1 143 0 257 288 12 31 chrX 2893040 2893200 -159706730 + L1M4 LINE L1 3325 3481 -2665 334 345 18 36 chrX 2893273 2893441 -159706489 + L1M4 LINE L1 3503 3667 -2479 694 151 8 8 chrX 2894189 2894315 -159705615 + MER41B LTR ERV1 510 635 0 * 3215 239 40 45 chrX 2894315 2894456 -159705474 - Charlie5 DNA MER1_type -1359 1265 1125 2232 121 7 0 chrX 2894456 2894761 -159705169 - AluSx SINE Alu -3 309 3 3215 239 40 45 chrX 2894761 2895890 -159704040 - Charlie5 DNA MER1_type -1499 1125 1 388 270 63 38 chrX 2895890 2896049 -159703881 + L1ME1 LINE L1 2057 2219 -4177 419 276 65 47 chrX 2896051 2896158 -159703772 + L1ME1 LINE L1 2182 2286 -3929 321 94 0 0 chrX 2896158 2896211 -159703719 - L1PA15 LINE L1 -2 6163 6111 419 276 65 47 chrX 2896211 2896443 -159703487 + L1ME1 LINE L1 2286 2527 -3688 1593 275 85 24 chrX 2896568 2897969 -159701961 + L1ME1 LINE L1 3068 4577 -1638 1340 239 75 34 chrX 2897966 2898562 -159701368 + L1ME1 LINE L1 5301 5919 -316 * 30 0 0 0 chrX 2898568 2898598 -159701332 + AT_rich Low_complexity Low_complexity 1 30 0 424 135 116 9 chrX 2898608 2898717 -159701213 - L1MA5A LINE L1 -159 6138 6042 2946 141 32 2 chrX 2898717 2899214 -159700716 - MER75 DNA T2_type -2 512 1 424 135 116 9 chrX 2899214 2899900 -159700030 - L1MA5A LINE L1 -255 6042 5262 600 257 107 48 chrX 2899917 2900271 -159699659 + LTR52 LTR ERVL 42 416 -5 425 274 38 51 chrX 2900271 2900605 -159699325 + L1ME1 LINE L1 5916 6251 -2 2575 55 0 0 chrX 2900694 2901005 -159698925 - AluY SINE Alu 0 311 1 682 170 13 22 chrX 2901430 2901624 -159698306 + L1M2 LINE L1 5304 5494 -689 615 208 28 55 chrX 2901801 2901971 -159697959 - L1ME1 LINE L1 -229 5937 5775 3421 124 9 47 chrX 2901971 2902519 -159697411 - MER1A DNA MER1_type 0 527 1 615 208 28 55 chrX 2902519 2902603 -159697327 - L1ME1 LINE L1 -391 5775 5690 * 1940 142 12 31 chrX 2902577 2902971 -159696959 + L1M2 LINE L1 5417 5817 -360 377 228 120 0 chrX 2902994 2903086 -159696844 - MLT1E LTR MaLR -142 451 349 447 267 73 27 chrX 2903164 2903314 -159696616 - MLT1E LTR MaLR -435 158 2 2362 101 48 25 chrX 2904005 2904361 -159695569 + THE1B LTR MaLR 1 364 0 1550 185 15 4 chrX 2904557 2904827 -159695103 - AluJo SINE Alu -39 273 1 749 133 23 0 chrX 2906494 2906622 -159693308 + L1PB4 LINE L1 5652 5782 -374 1717 188 6 6 chrX 2906747 2907077 -159692853 + L1PB4 LINE L1 5825 6154 -2 1803 174 0 3 chrX 2907746 2908033 -159691897 + AluJb SINE Alu 1 286 -26 502 257 72 7 chrX 2908615 2908767 -159691163 + MLT1E3 LTR MaLR 91 252 -341 1323 153 0 19 chrX 2908785 2909001 -159690929 + AluJo SINE Alu 95 306 -6 838 199 0 20 chrX 2909001 2909152 -159690778 + AluJb SINE Alu 135 282 -30 666 264 46 8 chrX 2909216 2909455 -159690475 + MLT1E3 LTR MaLR 377 624 0 2144 120 3 0 chrX 2909655 2909947 -159689983 - AluSx SINE Alu -6 306 14 204 188 0 0 chrX 2909949 2909981 -159689949 + polypyrimidine Low_complexity Low_complexity 1 32 0 1575 166 24 28 chrX 2910068 2910199 -159689731 + AluJo SINE Alu 1 131 -181 207 0 0 0 chrX 2910199 2910222 -159689708 + (TAA)n Simple_repeat Simple_repeat 2 24 0 1575 166 24 28 chrX 2910222 2910379 -159689551 + AluJo SINE Alu 131 288 -24 2334 81 17 0 chrX 2910471 2910766 -159689164 - AluSg SINE Alu -10 300 1 285 310 41 53 chrX 2911270 2911441 -159688489 - MIR SINE MIR -74 188 20 3704 135 17 2 chrX 2911456 2912041 -159687889 - L1PA16 LINE L1 -9 6157 5564 1373 191 74 83 chrX 2912690 2912958 -159686972 - MLT1C LTR MaLR -4 463 194 199 54 54 0 chrX 2912958 2912995 -159686935 + A-rich Low_complexity Low_complexity 2 40 0 1579 171 15 7 chrX 2913003 2913277 -159686653 - AluJo SINE Alu -36 276 1 1373 191 74 83 chrX 2913277 2913433 -159686497 - MLT1C LTR MaLR -280 187 34 1701 173 35 0 chrX 2913666 2913783 -159686147 + AluJo SINE Alu 1 112 -200 1022 101 11 17 chrX 2913783 2913961 -159685969 + (GAAA)n Simple_repeat Simple_repeat 2 178 0 1701 173 35 0 chrX 2913961 2914132 -159685798 + AluJo SINE Alu 112 299 -13 1231 193 51 0 chrX 2915896 2916170 -159683760 - L1MA8 LINE L1 -325 5966 5679 678 188 101 111 chrX 2916170 2916458 -159683472 + L1MA9 LINE L1 6006 6290 -22 509 125 0 0 chrX 2916473 2916545 -159683385 + AluJ/FRAM SINE Alu 217 288 -24 1066 238 87 67 chrX 2916783 2917291 -159682639 + MER77 LTR ERV1 81 598 -7 1280 245 85 32 chrX 2917877 2918053 -159681877 - L1MC4a LINE L1 -614 5560 5666 1800 168 52 19 chrX 2918053 2918416 -159681514 - THE1C LTR MaLR 0 375 1 1280 245 85 32 chrX 2918416 2918828 -159681102 - L1MC4a LINE L1 -507 5667 5278 6940 53 3 0 chrX 2919344 2920670 -159679260 - L1PA7 LINE L1 -3 6151 4816 7454 89 9 4 chrX 2920670 2921795 -159678135 + L1P LINE L1 3648 4778 -1368 885 217 0 0 chrX 2921881 2922033 -159677897 - FRAM SINE Alu -25 151 1 1450 265 38 36 chrX 2922201 2922755 -159677175 - MLT1E2 LTR MaLR -31 595 41 351 238 40 0 chrX 2922913 2923014 -159676916 - MLT1D LTR MaLR -400 105 1 4210 101 12 71 chrX 2923052 2923784 -159676146 + L1PB3 LINE L1 5464 6152 -2 2239 133 0 0 chrX 2924067 2924376 -159675554 + AluSx SINE Alu 1 309 -3 1578 173 49 12 chrX 2924452 2924798 -159675132 - L1MA7 LINE L1 -100 6191 5833 808 171 0 0 chrX 2924879 2925008 -159674922 + FLAM_A SINE Alu 1 129 -4 538 83 0 0 chrX 2925009 2925093 -159674837 + L1PB1 LINE L1 6066 6149 -2 2882 84 17 0 chrX 2925960 2926376 -159673554 - L1PA12 LINE L1 -389 5785 5363 2671 69 40 8 chrX 2926376 2926740 -159673190 + L1PA12 LINE L1 5779 6165 -3 225 196 0 0 chrX 2926742 2926788 -159673142 + (TA)n Simple_repeat Simple_repeat 2 47 0 189 74 0 0 chrX 2926788 2926815 -159673115 + (TCTA)n Simple_repeat Simple_repeat 2 28 0 * 513 0 0 0 chrX 2926814 2926871 -159673059 + (TG)n Simple_repeat Simple_repeat 2 58 0 353 237 26 66 chrX 2926879 2927031 -159672899 + MER101 LTR ERV1 298 443 -31 733 175 0 0 chrX 2927624 2927738 -159672192 + FLAM_C SINE Alu 5 118 -15 23 0 0 0 chrX 2927738 2927761 -159672169 + AT_rich Low_complexity Low_complexity 1 23 0 23 0 0 0 chrX 2927789 2927812 -159672118 + AT_rich Low_complexity Low_complexity 1 23 0 247 235 20 10 chrX 2928995 2929093 -159670837 + GA-rich Low_complexity Low_complexity 2 100 0 1559 148 22 25 chrX 2929115 2929392 -159670538 + L1PB4 LINE L1 5876 6151 -5 21 36 0 0 chrX 2929546 2929574 -159670356 + AT_rich Low_complexity Low_complexity 1 28 0 241 167 17 17 chrX 2930054 2930114 -159669816 + (TATG)n Simple_repeat Simple_repeat 3 62 0 1724 194 12 0 chrX 2930145 2930480 -159669450 - MER7A DNA MER2_type -9 337 1 532 199 7 7 chrX 2930488 2930634 -159669296 + (TCCA)n Simple_repeat Simple_repeat 4 149 0 188 184 20 0 chrX 2931484 2931533 -159668397 + CT-rich Low_complexity Low_complexity 1 50 0 * 379 236 6 6 chrX 2931532 2931710 -159668220 + (CA)n Simple_repeat Simple_repeat 1 178 0 4025 130 57 28 chrX 2932195 2932919 -159667011 - L1PA16 LINE L1 -3 6163 5419 1358 219 77 87 chrX 2933042 2933528 -159666402 - LTR38B LTR ERV1 -18 592 112 2144 120 3 0 chrX 2933528 2933829 -159666101 + AluSx SINE Alu 1 302 -10 1358 219 77 87 chrX 2933829 2933940 -159665990 - LTR38B LTR ERV1 -498 112 1 3311 127 42 14 chrX 2934009 2934575 -159665355 + L1MA5A LINE L1 5710 6291 -6 22 0 0 0 chrX 2934575 2934597 -159665333 + AT_rich Low_complexity Low_complexity 1 22 0 3203 179 13 24 chrX 2934599 2935271 -159664659 + L1MB3 LINE L1 5509 6173 -10 618 220 17 95 chrX 2935619 2935860 -159664070 + MER96B DNA MER1_type? 2 223 -194 810 192 11 16 chrX 2935938 2936120 -159663810 + MER20 DNA MER1_type 36 216 -3 2331 73 7 20 chrX 2936597 2936898 -159663032 + AluY SINE Alu 1 297 -14 4757 133 18 2 chrX 2937556 2938389 -159661541 - L1PB3 LINE L1 -4 6150 5305 541 266 28 0 chrX 2939156 2939299 -159660631 - MER20 DNA MER1_type -65 154 8 1893 85 4 4 chrX 2939299 2939570 -159660360 + L1PA13 LINE L1 5666 5936 -227 879 204 0 0 chrX 2940289 2940608 -159659322 + (ATG)n Simple_repeat Simple_repeat 1 319 0 2018 119 26 10 chrX 2940911 2941213 -159658717 - AluSx SINE Alu -5 307 1 23 0 0 0 chrX 2941919 2941942 -159657988 + AT_rich Low_complexity Low_complexity 1 23 0 319 397 57 10 chrX 2943375 2943569 -159656361 - MIR SINE MIR -40 222 20 1137 236 81 17 chrX 2944444 2944741 -159655189 - MSTD LTR MaLR 0 396 81 26 0 0 0 chrX 2944741 2944767 -159655163 + AT_rich Low_complexity Low_complexity 1 26 0 1721 196 21 0 chrX 2944773 2945058 -159654872 - AluJo SINE Alu -21 291 1 286 206 9 92 chrX 2945229 2945457 -159654473 + MSTB1 LTR MaLR 224 432 0 225 94 0 0 chrX 2945992 2946024 -159653906 + (TA)n Simple_repeat Simple_repeat 2 33 0 327 332 56 42 chrX 2946036 2946250 -159653680 - MIR SINE MIR -15 247 31 1253 210 41 0 chrX 2946401 2946696 -159653234 - L1MA4 LINE L1 -11 6289 5983 1960 148 127 16 chrX 2946726 2947111 -159652819 - MSTA LTR MaLR 0 428 1 180 0 0 0 chrX 2947212 2947232 -159652698 + (CAAA)n Simple_repeat Simple_repeat 1 20 0 1102 133 49 18 chrX 2947580 2947806 -159652124 - L1MA8 LINE L1 -86 6205 5973 606 195 32 0 chrX 2947839 2947962 -159651968 + MER20 DNA MER1_type 93 219 0 2069 125 6 3 chrX 2948166 2948477 -159651453 + AluSx SINE Alu 1 312 0 364 133 235 0 chrX 2948587 2948685 -159651245 + L1MB7 LINE L1 5841 5961 -223 2209 193 52 9 chrX 2948994 2949440 -159650490 - MER70A LTR ERVL -7 465 1 1685 174 3 11 chrX 2950316 2950598 -159649332 - AluJo SINE Alu -1 311 32 214 370 28 28 chrX 2950999 2951107 -159648823 - MIR SINE MIR -152 110 3 1418 186 127 28 chrX 2951250 2951643 -159648287 + MSTB1 LTR MaLR 1 432 0 392 182 0 0 chrX 2952173 2952239 -159647691 - MER5A DNA MER1_type -123 66 1 362 281 91 39 chrX 2952342 2952573 -159647357 + MLT1K LTR MaLR 346 588 0 3488 15 0 0 chrX 2953042 2953441 -159646489 + L1PA2 LINE L1 5756 6154 -1 288 0 0 0 chrX 2953835 2953867 -159646063 + (CA)n Simple_repeat Simple_repeat 1 32 0 639 336 34 0 chrX 2954563 2954771 -159645159 + MIR SINE MIR 30 244 -18 378 87 130 0 chrX 2955013 2955082 -159644848 - MADE1 DNA Mariner 0 80 3 * 1702 231 61 9 chrX 2955082 2955538 -159644392 - MLT1D LTR MaLR -20 485 6 287 152 0 0 chrX 2955546 2955592 -159644338 - MLT1D LTR MaLR -457 48 3 284 128 21 0 chrX 2955595 2955642 -159644288 - MLT1D LTR MaLR -455 50 3 300 125 42 0 chrX 2955645 2955693 -159644237 - MLT1D LTR MaLR -455 50 1 274 167 21 0 chrX 2955694 2955742 -159644188 - MLT1D LTR MaLR -455 50 2 269 146 42 0 chrX 2955786 2955834 -159644096 - MLT1D LTR MaLR -455 50 1 248 78 20 59 chrX 2955836 2955887 -159644043 - MLT1D LTR MaLR -456 49 1 232 329 85 0 chrX 2955955 2956037 -159643893 - MIR SINE MIR -12 250 162 865 209 5 0 chrX 2956315 2956502 -159643428 + L1M2 LINE L1 5328 5515 -797 1453 233 47 13 chrX 2957013 2957190 -159642740 - MLT1C LTR MaLR -3 464 294 2315 204 28 22 chrX 2957190 2957699 -159642231 - MLT2B2 LTR ERVL 0 515 4 1453 233 47 13 chrX 2957699 2957968 -159641962 - MLT1C LTR MaLR -173 294 3 2187 203 25 48 chrX 2958942 2959425 -159640505 + MER70A LTR ERVL 1 472 0 2174 176 21 28 chrX 2960331 2960768 -159639162 + Tigger2a DNA MER2_type 1 434 0 3925 119 5 5 chrX 2960862 2961444 -159638486 + L1PA15 LINE L1 5579 6160 -5 2413 211 61 2 chrX 2961803 2961841 -159638089 - MLT2B1 LTR ERVL -2 518 484 925 69 34 11 chrX 2961841 2962016 -159637914 + (TAGA)n Simple_repeat Simple_repeat 2 180 0 2413 211 61 2 chrX 2962016 2962466 -159637464 - MLT2B1 LTR ERVL -36 484 1 508 249 10 58 chrX 2962545 2962721 -159637209 + MER20 DNA MER1_type 1 184 -35 429 66 0 0 chrX 2962721 2962782 -159637148 + (CA)n Simple_repeat Simple_repeat 2 62 0 237 33 0 0 chrX 2962781 2962811 -159637119 + (GA)n Simple_repeat Simple_repeat 2 31 0 * 508 249 10 58 chrX 2962782 2962839 -159637091 + MER20 DNA MER1_type 184 195 -24 913 258 19 19 chrX 2963112 2963372 -159636558 + MLT1D LTR MaLR 246 505 0 1141 187 34 8 chrX 2964003 2964238 -159635692 - MSTB1 LTR MaLR 0 432 192 458 117 68 0 chrX 2964238 2964341 -159635589 + CT-rich Low_complexity Low_complexity 4 113 0 1944 150 6 31 chrX 2964359 2964679 -159635251 - AluJb SINE Alu 0 312 1 892 246 5 0 chrX 2964680 2964875 -159635055 - MSTB1 LTR MaLR -230 196 1 269 287 75 11 chrX 2965206 2965300 -159634630 + MLT1I LTR MaLR 160 259 -150 1528 197 0 3 chrX 2965393 2965703 -159634227 - AluSc SINE Alu 0 309 1 2059 118 30 7 chrX 2967254 2967551 -159632379 - AluSx SINE Alu -8 304 1 24 53 0 0 chrX 2968214 2968252 -159631678 + AT_rich Low_complexity Low_complexity 1 38 0 243 0 0 0 chrX 2968252 2968279 -159631651 + (CA)n Simple_repeat Simple_repeat 2 28 0 1880 167 0 16 chrX 2968689 2969006 -159630924 + AluSx SINE Alu 1 312 0 236 330 33 11 chrX 2970170 2970261 -159629669 - MIR SINE MIR -160 102 10 646 221 37 12 chrX 2970505 2970668 -159629262 - MLT1A1 LTR MaLR 0 374 208 1309 197 0 9 chrX 2970723 2970974 -159628956 - AluJo SINE Alu 0 309 61 775 176 7 7 chrX 2970979 2971121 -159628809 - MLT1A1 LTR MaLR -214 151 10 233 274 0 0 chrX 2971497 2971559 -159628371 + MER68 LTR ERV1 236 297 -265 271 128 51 13 chrX 2971991 2972069 -159627861 + GA-rich Low_complexity Low_complexity 2 82 0 1739 132 42 4 chrX 2973126 2973391 -159626539 + AluSg SINE Alu 35 309 -1 2095 110 6 25 chrX 2973715 2974033 -159625897 + AluSx SINE Alu 1 312 0 889 249 93 22 chrX 2974226 2974542 -159625388 - MSTD LTR MaLR 0 396 1 21 0 0 0 chrX 2974959 2974980 -159624950 + AT_rich Low_complexity Low_complexity 1 21 0 206 216 27 14 chrX 2975109 2975183 -159624747 + (TA)n Simple_repeat Simple_repeat 2 76 0 25 0 0 0 chrX 2975421 2975446 -159624484 + AT_rich Low_complexity Low_complexity 1 25 0 363 167 24 24 chrX 2975491 2975575 -159624355 + L1MC2 LINE L1 6253 6336 -8 1959 217 102 15 chrX 2976098 2976687 -159623243 + LTR48B LTR ERV1 3 642 -2 296 192 86 102 chrX 2976707 2976887 -159623043 - LTR49 LTR ERV1 -50 737 556 2151 216 26 56 chrX 2976887 2977457 -159622473 + MLT2B3 LTR ERVL 2 554 0 296 192 86 102 chrX 2977457 2977493 -159622437 - LTR49 LTR ERV1 -231 556 332 531 195 51 0 chrX 2977493 2977611 -159622319 - L1MB5 LINE L1 -78 6096 5973 990 136 29 15 chrX 2978226 2978432 -159621498 + L1P4 LINE L1 5138 5346 -800 1285 89 0 0 chrX 2978432 2978590 -159621340 - AluSg/x SINE Alu -8 302 145 482 133 41 0 chrX 2978600 2978698 -159621232 + L1P4 LINE L1 5338 5439 -722 242 266 134 59 chrX 2979350 2979530 -159620400 - MIR3 SINE MIR -62 146 2 324 94 0 0 chrX 2979843 2979896 -159620034 + (CA)n Simple_repeat Simple_repeat 2 54 0 22 35 0 0 chrX 2980236 2980265 -159619665 + AT_rich Low_complexity Low_complexity 1 29 0 2057 145 0 0 chrX 2981526 2981822 -159618108 - AluSx SINE Alu -16 296 1 236 236 28 28 chrX 2981856 2981928 -159618002 - HAL1b LINE L1 -781 567 496 247 193 0 18 chrX 2982104 2982161 -159617769 + L1M4 LINE L1 2964 3019 -3127 688 225 70 5 chrX 2982298 2982485 -159617445 + L1MB7 LINE L1 5814 6012 -172 1170 141 6 6 chrX 2982486 2982663 -159617267 - AluJb SINE Alu -2 310 134 234 0 0 0 chrX 2982664 2982690 -159617240 + (TA)n Simple_repeat Simple_repeat 2 27 0 2272 90 0 26 chrX 2982690 2983002 -159616928 - AluSx SINE Alu -8 304 1 330 307 46 60 chrX 2983142 2983360 -159616570 + L1MB8 LINE L1 5955 6169 -9 1919 134 26 67 chrX 2983492 2983879 -159616051 - L1PA14 LINE L1 -3 6158 5788 1953 154 27 29 chrX 2983937 2984313 -159615617 - THE1C LTR MaLR 0 375 1 207 0 0 0 chrX 2984546 2984569 -159615361 + (GGAA)n Simple_repeat Simple_repeat 2 24 0 1301 33 6 22 chrX 2984595 2984777 -159615153 + (GAAA)n Simple_repeat Simple_repeat 1 179 0 293 118 20 0 chrX 2984777 2984828 -159615102 + GA-rich Low_complexity Low_complexity 3 54 0 1927 104 0 7 chrX 2984952 2985241 -159614689 - L1PA15 LINE L1 0 6165 5879 290 36 455 0 chrX 2985933 2985988 -159613942 + MADE1 DNA Mariner 1 80 0 2460 133 5 5 chrX 2986398 2986783 -159613147 - L1PA16 LINE L1 -9 6157 5773 1015 233 96 60 chrX 2987733 2988180 -159611750 - MLT1C LTR MaLR 0 467 5 753 218 110 47 chrX 2988195 2988512 -159611418 - MLT1C LTR MaLR -123 344 8 719 215 89 39 chrX 2988529 2988851 -159611079 - MLT1C LTR MaLR -122 345 1 1886 175 23 0 chrX 2988871 2989174 -159610756 + AluJo SINE Alu 3 312 0 250 325 39 0 chrX 2989308 2989385 -159610545 + MIR3 SINE MIR 105 184 -24 907 228 43 63 chrX 2989830 2990178 -159609752 + MLT2B1 LTR ERVL 6 369 -45 537 132 25 0 chrX 2990178 2990299 -159609631 + (TAGA)n Simple_repeat Simple_repeat 3 126 0 352 103 75 0 chrX 2990398 2990505 -159609425 + (TCTA)n Simple_repeat Simple_repeat 3 117 0 191 44 89 0 chrX 2990577 2990622 -159609308 + (TCTA)n Simple_repeat Simple_repeat 2 50 0 295 165 31 21 chrX 2990775 2990872 -159609058 + (TCTA)n Simple_repeat Simple_repeat 1 98 0 296 175 0 0 chrX 2990872 2990935 -159608995 + MLT2B1 LTR ERVL 458 520 0 202 101 72 0 chrX 2991254 2991323 -159608607 + (TCTA)n Simple_repeat Simple_repeat 4 77 0 189 213 0 0 chrX 2992273 2992320 -159607610 + CT-rich Low_complexity Low_complexity 3 49 0 182 146 0 24 chrX 2992337 2992378 -159607552 + (TTTC)n Simple_repeat Simple_repeat 4 43 0 289 187 28 19 chrX 2992426 2992533 -159607397 + CT-rich Low_complexity Low_complexity 2 109 0 1229 132 5 18 chrX 2993967 2994186 -159605744 + L1PB2 LINE L1 5734 5949 -202 247 259 49 98 chrX 2994347 2994388 -159605542 - L2 LINE L2 -1292 2022 1981 2213 122 0 0 chrX 2994388 2994682 -159605248 + AluSx SINE Alu 3 296 -16 247 259 49 98 chrX 2994682 2994783 -159605147 - L2 LINE L2 -1333 1981 1887 462 250 93 56 chrX 2995107 2995251 -159604679 + L1MC4 LINE L1 7750 7887 -155 393 22 0 0 chrX 2995251 2995297 -159604633 + (TG)n Simple_repeat Simple_repeat 1 46 0 462 250 93 56 chrX 2995297 2995420 -159604510 + L1MC4 LINE L1 7887 8027 -15 6752 92 22 4 chrX 2995784 2997509 -159602421 + L1PA8 LINE L1 4425 6168 -4 1898 131 10 74 chrX 2999209 2999387 -159600543 + MLT1B LTR MaLR 2 190 -206 2166 96 4 0 chrX 2999387 2999701 -159600229 + AluY SINE Alu 1 315 0 1898 131 10 74 chrX 2999701 2999715 -159600215 + MLT1B LTR MaLR 190 203 -193 2359 92 3 0 chrX 2999715 3000021 -159599909 + AluSp SINE Alu 1 307 -6 1898 131 10 74 chrX 3000021 3000243 -159599687 + MLT1B LTR MaLR 203 396 0 551 198 16 2 chrX 3000243 3000436 -159599494 + MLT1B LTR MaLR 158 390 0 351 94 0 0 chrX 3000530 3000583 -159599347 - MLT2A2 LTR ERVL -2 451 399 240 214 0 0 chrX 3000584 3000640 -159599290 + (TA)n Simple_repeat Simple_repeat 2 57 0 2949 77 14 22 chrX 3000640 3001056 -159598874 - MLT2A2 LTR ERVL -40 413 1 612 243 145 26 chrX 3001440 3001744 -159598186 + MLT1D LTR MaLR 22 361 -144 356 119 34 0 chrX 3001770 3001829 -159598101 - MLT2A2 LTR ERVL -136 317 257 1088 243 66 30 chrX 3001841 3002248 -159597682 + MLT1C LTR MaLR 46 467 0 189 339 160 16 chrX 3002545 3002852 -159597078 - L2 LINE L2 -2330 984 634 521 175 35 9 chrX 3003441 3003555 -159596375 - L1MB5 LINE L1 -8 6166 6050 1574 92 4 31 chrX 3004434 3004694 -159595236 + L1MA1 LINE L1 5978 6230 -72 2389 128 0 22 chrX 3005199 3005567 -159594363 + THE1B LTR MaLR 1 360 -4 616 246 134 45 chrX 3005872 3006185 -159593745 + MLT1C LTR MaLR 5 345 -122 1249 215 61 86 chrX 3006199 3006674 -159593256 + MLT1C LTR MaLR 5 467 0 21 36 0 0 chrX 3006720 3006748 -159593182 + AT_rich Low_complexity Low_complexity 1 28 0 4652 205 37 6 chrX 3006786 3008116 -159591814 + L1MC1 LINE L1 4897 6259 -74 781 271 104 26 chrX 3008171 3008555 -159591375 - MLT1C LTR MaLR -53 414 1 1915 205 8 51 chrX 3009633 3009772 -159590158 + L1MB5 LINE L1 5695 5838 -336 1811 167 26 13 chrX 3009772 3010078 -159589852 - AluJo SINE Alu -2 310 1 1915 205 8 51 chrX 3010078 3010430 -159589500 + L1MB5 LINE L1 5838 6165 -9 201 147 0 0 chrX 3010462 3010496 -159589434 + (A)n Simple_repeat Simple_repeat 1 34 0 300 269 170 20 chrX 3010701 3010845 -159589085 + MER5A DNA MER1_type 14 189 0 1836 151 30 10 chrX 3011485 3011969 -159587961 + AluJo SINE Alu 1 312 0 1264 94 0 0 chrX 3011770 3012091 -159587839 + (GAAA)n Simple_repeat Simple_repeat 1 321 0 341 305 37 63 chrX 3012466 3012656 -159587274 + L1M4 LINE L1 2724 2908 -3238 1948 179 3 0 chrX 3012710 3013012 -159586918 + AluJo SINE Alu 1 303 -9 288 0 0 0 chrX 3013012 3013044 -159586886 + (TA)n Simple_repeat Simple_repeat 2 33 0 255 202 11 180 chrX 3013303 3013486 -159586444 - MLT1H LTR MaLR -395 154 3 221 92 92 0 chrX 3013574 3013650 -159586280 + (TAGA)n Simple_repeat Simple_repeat 2 84 0 975 114 17 6 chrX 3013663 3013838 -159586092 + (TAGA)n Simple_repeat Simple_repeat 1 177 0 696 139 17 17 chrX 3013877 3014057 -159585873 + (TAGA)n Simple_repeat Simple_repeat 1 180 0 21 36 0 0 chrX 3014156 3014184 -159585746 + AT_rich Low_complexity Low_complexity 1 28 0 3146 193 61 8 chrX 3014456 3015212 -159584718 + L1MA9 LINE L1 5489 6284 -28 183 159 0 72 chrX 3016478 3016547 -159583383 + CT-rich Low_complexity Low_complexity 4 67 0 201 320 67 0 chrX 3017195 3017270 -159582660 + polypurine Low_complexity Low_complexity 3 82 0 275 49 24 0 chrX 3017345 3017386 -159582544 + (GGAA)n Simple_repeat Simple_repeat 2 43 0 2072 94 0 0 chrX 3018089 3018354 -159581576 + AluSq SINE Alu 1 265 -48 189 0 0 0 chrX 3018390 3018411 -159581519 + (TAA)n Simple_repeat Simple_repeat 2 22 0 360 0 0 0 chrX 3018511 3018551 -159581379 + (TAAA)n Simple_repeat Simple_repeat 1 40 0 292 322 6 49 chrX 3218727 3218910 -159381020 + G-rich Low_complexity Low_complexity 1 175 0 1426 142 103 36 chrX 3219961 3220181 -159379749 - MSTA LTR MaLR -9 419 172 2504 53 3 0 chrX 3220181 3220483 -159379447 - AluY SINE Alu -7 304 2 1426 142 103 36 chrX 3220483 3220564 -159379366 - MSTA LTR MaLR -256 172 98 2463 163 28 79 chrX 3221010 3221619 -159378311 - L1MB3 LINE L1 -4 6179 5602 1672 178 28 71 chrX 3221596 3221689 -159378241 - L1MB3 LINE L1 -1755 4391 4296 * 1937 137 46 0 chrX 3221689 3221974 -159377956 - AluSx SINE Alu -14 298 1 1672 178 28 71 chrX 3221974 3222021 -159377909 - L1MB3 LINE L1 -1850 4296 4249 1861 115 0 95 chrX 3222021 3222359 -159377571 - AluSx SINE Alu -6 306 1 1672 178 28 71 chrX 3222359 3222750 -159377180 - L1MB3 LINE L1 -1897 4249 3882 1339 118 9 5 chrX 3223252 3223464 -159376466 + THE1A LTR MaLR 86 298 -57 1400 70 0 10 chrX 3223492 3223691 -159376239 + LTR43 LTR ERV1 398 594 -8 564 105 42 0 chrX 3223706 3223801 -159376129 + L1MA10 LINE L1 6236 6334 0 305 182 0 15 chrX 3225656 3225722 -159374208 + MLT1I LTR MaLR 98 162 -492 1811 107 10 10 chrX 3225769 3226058 -159373872 - L1PA13 LINE L1 -2 6161 5873 1968 149 0 3 chrX 3226831 3227133 -159372797 - AluJb SINE Alu -7 305 5 314 195 49 12 chrX 3227313 3227395 -159372535 + MLT1I LTR MaLR 318 402 -7 2460 46 0 13 chrX 3227489 3227794 -159372136 + AluY SINE Alu 1 301 -10 297 0 0 0 chrX 3227900 3227933 -159371997 + (CA)n Simple_repeat Simple_repeat 2 34 0 998 68 28 11 chrX 3229183 3229359 -159370571 + (TAGA)n Simple_repeat Simple_repeat 1 179 0 248 167 46 42 chrX 3229403 3229628 -159370302 + (TAGA)n Simple_repeat Simple_repeat 1 226 0 392 124 46 52 chrX 3229646 3229799 -159370131 + (TAGA)n Simple_repeat Simple_repeat 3 154 0 512 55 22 22 chrX 3229865 3229956 -159369974 + (TAGA)n Simple_repeat Simple_repeat 2 92 0 2756 163 36 0 chrX 3230638 3231141 -159368789 + L1MB3 LINE L1 5653 6173 -10 194 0 0 37 chrX 3232897 3232924 -159367006 + (TTTTTG)n Simple_repeat Simple_repeat 2 27 0 26 30 0 0 chrX 3233622 3233655 -159366275 + AT_rich Low_complexity Low_complexity 1 33 0 3690 135 30 3 chrX 3233791 3234427 -159365503 + MER39B LTR ERV1 1 653 0 3731 106 12 9 chrX 3234463 3235027 -159364903 - L1PA16 LINE L1 -9 6157 5592 1228 158 195 16 chrX 3235619 3235865 -159364065 + AluJo SINE Alu 1 290 -12 558 148 0 0 chrX 3235865 3235966 -159363964 + (GGGGA)n Simple_repeat Simple_repeat 1 101 0 328 215 0 42 chrX 3235957 3236101 -159363829 + GA-rich Low_complexity Low_complexity 1 138 0 * 249 273 13 26 chrX 3236101 3236178 -159363752 + A-rich Low_complexity Low_complexity 1 76 0 471 289 0 0 chrX 3236261 3236389 -159363541 - MER77 LTR ERV1 0 605 478 898 176 64 5 chrX 3236394 3236598 -159363332 - L1M2 LINE L1 -725 5587 5372 250 138 62 75 chrX 3236600 3236637 -159363293 + L1MA9 LINE L1 6234 6270 -42 1677 159 0 15 chrX 3236637 3236901 -159363029 + AluJb SINE Alu 35 294 -18 250 138 62 75 chrX 3236901 3236943 -159362987 + L1MA9 LINE L1 6270 6312 0 1274 261 55 60 chrX 3237022 3237509 -159362421 - MER77 LTR ERV1 -119 486 2 185 35 69 0 chrX 3238626 3238655 -159361275 + (TAAA)n Simple_repeat Simple_repeat 1 31 0 2392 108 13 35 chrX 3238701 3239073 -159360857 - THE1B LTR MaLR 0 364 1 1893 169 0 10 chrX 3239169 3239483 -159360447 + AluJb SINE Alu 1 311 -1 875 219 86 60 chrX 3239652 3240056 -159359874 - MLT1C LTR MaLR -6 618 45 278 266 32 13 chrX 3240957 3241115 -159358815 + (TATAA)n Simple_repeat Simple_repeat 2 162 0 215 224 19 28 chrX 3241071 3241178 -159358752 + (TTA)n Simple_repeat Simple_repeat 3 108 0 * 205 121 61 38 chrX 3241178 3241310 -159358620 + (TATAA)n Simple_repeat Simple_repeat 5 139 0 255 178 23 85 chrX 3241357 3241486 -159358444 + (TATAA)n Simple_repeat Simple_repeat 2 122 0 22 35 0 0 chrX 3241703 3241732 -159358198 + AT_rich Low_complexity Low_complexity 1 29 0 5092 135 20 7 chrX 3243562 3243588 -159356342 + L1PB4 LINE L1 5245 5269 -887 2149 109 46 57 chrX 3243588 3243955 -159355975 + THE1B LTR MaLR 1 363 -1 5092 135 20 7 chrX 3243955 3244835 -159355095 + L1PB4 LINE L1 5269 6154 -2 272 301 194 25 chrX 3245555 3245751 -159354179 - MIR SINE MIR -22 240 12 236 212 15 0 chrX 3246874 3246940 -159352990 + (CATATA)n Simple_repeat Simple_repeat 4 70 0 2250 169 43 0 chrX 3247149 3247563 -159352367 - MSTB1 LTR MaLR 0 432 1 1049 137 6 17 chrX 3247627 3247802 -159352128 + MSTB1 LTR MaLR 259 431 -1 595 248 63 76 chrX 3248007 3248374 -159351556 + L1ME3 LINE L1 5793 6154 -8 326 320 72 11 chrX 3248537 3248718 -159351212 + L1M4 LINE L1 3239 3430 -2716 314 144 56 11 chrX 3250019 3250109 -159349821 + GA-rich Low_complexity Low_complexity 1 94 0 2163 177 60 20 chrX 3250936 3251387 -159348543 + MLT2B2 LTR ERVL 1 469 -46 378 175 32 7 chrX 3251390 3251544 -159348386 + (TCTA)n Simple_repeat Simple_repeat 3 160 0 257 59 0 0 chrX 3251555 3251589 -159348341 + MLT2B2 LTR ERVL 480 513 -2 491 232 64 8 chrX 3252373 3252498 -159347432 + MER20 DNA MER1_type 1 132 -87 1553 71 0 0 chrX 3252580 3252776 -159347154 + MER107 DNA MER1_type 1 196 -1 2168 122 3 3 chrX 3253127 3253439 -159346491 - AluSx SINE Alu 0 312 1 618 313 85 25 chrX 3254154 3254553 -159345377 - HERV16 LTR ERVL -896 4868 4446 1569 236 115 62 chrX 3255120 3255713 -159344217 + MLT1E3 LTR MaLR 1 624 0 1828 174 124 16 chrX 3256752 3257138 -159342792 - MSTA LTR MaLR 0 428 1 1231 173 35 143 chrX 3258109 3258514 -159341416 - MLT1A1 LTR MaLR -1 364 4 370 283 28 0 chrX 3258917 3259023 -159340907 - MER81 DNA DNA -1 113 5 264 325 82 49 chrX 3259078 3259321 -159340609 - L2 LINE L2 -659 2655 2405 763 207 101 48 chrX 3260326 3260534 -159339396 - MER20 DNA MER1_type 0 219 1 384 40 0 0 chrX 3260890 3260940 -159338990 + (TG)n Simple_repeat Simple_repeat 2 51 0 574 350 84 24 chrX 3261123 3261660 -159338270 - HERV16 LTR ERVL -2448 3316 2748 528 323 85 26 chrX 3261959 3262349 -159337581 - HERV16 LTR ERVL -4223 773 361 622 310 24 0 chrX 3262653 3262866 -159337064 - HERV16 LTR ERVL -3814 1182 965 4373 141 35 16 chrX 3263022 3263831 -159336099 + L1PB4 LINE L1 5330 6153 -3 260 120 60 27 chrX 3263971 3264121 -159335809 + (TA)n Simple_repeat Simple_repeat 2 156 0 341 165 77 24 chrX 3264150 3264283 -159335647 + (TA)n Simple_repeat Simple_repeat 1 146 -33 2338 99 0 0 chrX 3264283 3264577 -159335353 - AluSg SINE Alu -16 294 1 341 165 77 24 chrX 3264577 3264613 -159335317 + (TA)n Simple_repeat Simple_repeat 146 179 0 257 128 24 64 chrX 3264617 3264742 -159335188 + (TATAA)n Simple_repeat Simple_repeat 5 124 0 618 105 42 0 chrX 3266201 3266296 -159333634 - L1MA10 LINE L1 0 6334 6236 4113 103 10 5 chrX 3266311 3266894 -159333036 - LTR43 LTR ERV1 -8 594 9 269 206 0 16 chrX 3266896 3266959 -159332971 - L1MA10 LINE L1 -110 6224 6163 5581 113 21 7 chrX 3266990 3267758 -159332172 + MER4E LTR ERV1 1 779 0 371 127 0 56 chrX 3267761 3267832 -159332098 - L1MB1 LINE L1 -26 6163 6097 768 165 181 6 chrX 3267846 3268028 -159331902 + MER21A LTR ERV1 6 219 -712 2935 141 45 8 chrX 3268029 3268510 -159331420 + LTR1B LTR ERV1 1 499 -327 1580 183 25 28 chrX 3268510 3268952 -159330978 + LTR2B LTR ERV1 1 490 0 2782 78 0 0 chrX 3268952 3269309 -159330621 + Harlequin LTR ERV1 1 357 -6539 11339 22 0 0 chrX 3269309 3271323 -159328607 - L1PA2 LINE L1 0 6155 4142 39532 199 4 10 chrX 3271323 3278363 -159321567 + Harlequin LTR ERV1 814 7812 -1 1939 190 68 29 chrX 3278382 3278824 -159321106 + LTR2B LTR ERV1 32 490 0 898 117 114 80 chrX 3278824 3279088 -159320842 + LTR1B LTR ERV1 496 784 -1 674 227 8 0 chrX 3279129 3279261 -159320669 + MER21B LTR ERV1 279 411 -452 3008 136 54 24 chrX 3279267 3279851 -159320079 - MER4B LTR ERV1 -6 773 5 2571 143 14 24 chrX 3279857 3280278 -159319652 + MER21A LTR ERV1 506 922 -9 932 193 53 0 chrX 3280288 3280475 -159319455 + L1MB1 LINE L1 5917 6113 -76 1085 35 35 17 chrX 3281448 3281620 -159318310 + (TTTC)n Simple_repeat Simple_repeat 2 176 0 1700 160 0 7 chrX 3281621 3281896 -159318034 - AluJo SINE Alu -38 274 2 2257 106 0 0 chrX 3282070 3282372 -159317558 - AluY SINE Alu -9 302 1 2513 134 7 36 chrX 3282392 3282810 -159317120 - Tigger2a DNA MER2_type -4 430 25 210 143 0 0 chrX 3283205 3283240 -159316690 + (T)n Simple_repeat Simple_repeat 1 35 0 1852 181 0 6 chrX 3283257 3283571 -159316359 + AluJb SINE Alu 1 312 0 1030 113 0 0 chrX 3284144 3284277 -159315653 - AluSq/x SINE Alu -179 133 1 11994 110 24 4 chrX 3284345 3284734 -159315196 + L1P3 LINE L1 10 390 -6061 198 71 0 0 chrX 3284734 3284762 -159315168 + (TTTG)n Simple_repeat Simple_repeat 2 29 0 11994 110 24 4 chrX 3284762 3286133 -159313797 + L1P3 LINE L1 390 1785 -4666 291 185 33 0 chrX 3286135 3286227 -159313703 + GA-rich Low_complexity Low_complexity 2 96 0 2203 102 0 3 chrX 3287189 3287474 -159312456 + AluSx SINE Alu 1 284 -28 511 179 18 30 chrX 3287608 3287732 -159312198 + MLT1C LTR MaLR 1 108 -359 1296 158 48 9 chrX 3287732 3287960 -159311970 - AluJo SINE Alu -75 237 1 29 47 0 0 chrX 3288134 3288177 -159311753 + AT_rich Low_complexity Low_complexity 1 43 0 778 152 9 0 chrX 3288310 3288422 -159311508 - FLAM_C SINE Alu -19 124 12 189 0 0 0 chrX 3288978 3288999 -159310931 + (GGAA)n Simple_repeat Simple_repeat 4 24 0 1647 175 3 27 chrX 3289125 3289422 -159310508 + AluJo SINE Alu 1 290 -22 1208 230 36 48 chrX 3289701 3290057 -159309873 - L1MD2 LINE L1 0 6359 6008 1930 163 3 0 chrX 3290259 3290554 -159309376 - AluJo SINE Alu -16 296 1 1711 191 75 9 chrX 3290810 3291129 -159308801 + MER2 DNA MER2_type 4 343 -1 5375 60 0 6 chrX 3291366 3292005 -159307925 - L1PA8 LINE L1 -12 6160 5526 237 143 42 34 chrX 3292698 3292817 -159307113 + C-rich Low_complexity Low_complexity 4 123 0 1501 171 66 21 chrX 3293259 3293546 -159306384 - AluJo SINE Alu -9 303 4 5715 132 17 7 chrX 3294168 3295123 -159304807 - L1PA16 LINE L1 0 6166 5203 23 0 0 0 chrX 3295394 3295417 -159304513 + AT_rich Low_complexity Low_complexity 1 23 0 3055 251 71 14 chrX 3295417 3296323 -159303607 - L1MC4a LINE L1 -2 7806 6850 230 213 0 0 chrX 3296401 3296448 -159303482 - L1MA4 LINE L1 -14 6286 6240 * 1173 124 1 0 chrX 3296422 3296604 -159303326 + L1PA13 LINE L1 5636 5819 -342 1502 137 22 0 chrX 3296605 3296832 -159303098 + L1PA13 LINE L1 5931 6162 -1 50 42 0 0 chrX 3297777 3297848 -159302082 + AT_rich Low_complexity Low_complexity 1 71 0 704 238 29 121 chrX 3298450 3298623 -159301307 + MLT1E1 LTR MaLR 2 189 -465 3004 110 2 5 chrX 3298623 3299040 -159300890 - L1PA13 LINE L1 -2 6161 5746 704 238 29 121 chrX 3299040 3299356 -159300574 + MLT1E1 LTR MaLR 189 424 -230 238 167 24 0 chrX 3299361 3299403 -159300527 - MLT1E LTR MaLR -272 321 279 1911 152 0 33 chrX 3299496 3299799 -159300131 + AluJb SINE Alu 1 293 -19 2880 103 15 2 chrX 3300355 3300763 -159299167 + L1PA13 LINE L1 5732 6144 -19 369 0 0 0 chrX 3301030 3301071 -159298859 + (TTTTG)n Simple_repeat Simple_repeat 2 42 0 1788 164 0 4 chrX 3301072 3301353 -159298577 - AluJo SINE Alu -32 280 1 660 102 0 0 chrX 3301882 3301980 -159297950 + (CA)n Simple_repeat Simple_repeat 2 99 0 803 59 0 2 chrX 3302046 3302302 -159297628 + AluY SINE Alu 1 301 -10 309 316 28 12 chrX 3302314 3302457 -159297473 + MIR SINE MIR 12 103 -105 1626 161 14 27 chrX 3302461 3302753 -159297177 + AluJb SINE Alu 1 288 -24 1820 128 29 4 chrX 3303616 3303889 -159296041 - L1PA16 LINE L1 -5 6161 5882 807 296 117 49 chrX 3303889 3304860 -159295070 - L1M4 LINE L1 -2958 3188 2152 303 28 0 0 chrX 3304860 3304896 -159295034 + (TTTA)n Simple_repeat Simple_repeat 2 37 0 2292 106 3 0 chrX 3305081 3305383 -159294547 - AluSx SINE Alu -9 303 1 1512 145 9 112 chrX 3306049 3306380 -159293550 - AluJb SINE Alu -14 298 2 276 0 29 0 chrX 3306727 3306761 -159293169 + MADE1 DNA Mariner 46 80 0 1426 242 97 30 chrX 3307758 3308253 -159291677 + MLT1H LTR MaLR 1 528 -21 29 0 0 0 chrX 3308737 3308766 -159291164 + AT_rich Low_complexity Low_complexity 1 29 0 2081 138 0 0 chrX 3308808 3309104 -159290826 - AluSx SINE Alu -3 309 14 1888 155 0 29 chrX 3309854 3310164 -159289766 + AluJo SINE Alu 1 301 -11 2401 43 4 0 chrX 3310213 3310512 -159289418 - AluY SINE Alu 0 300 1 1643 162 49 0 chrX 3310891 3311010 -159288920 + AluJo SINE Alu 1 113 -199 321 26 0 0 chrX 3311010 3311048 -159288882 + (TAAAA)n Simple_repeat Simple_repeat 2 39 0 1643 162 49 0 chrX 3311048 3311212 -159288718 + AluJo SINE Alu 113 298 -14 1708 162 7 34 chrX 3312116 3312413 -159287517 - AluJo SINE Alu -23 289 1 1781 182 0 10 chrX 3312803 3313116 -159286814 - AluJo SINE Alu 0 312 3 1952 143 10 0 chrX 3313736 3314043 -159285887 + AluSx SINE Alu 1 310 -2 1969 177 32 0 chrX 3314076 3314448 -159285482 + L1PB4 LINE L1 5766 6149 -7 734 279 85 33 chrX 3314547 3315121 -159284809 + L1ME3A LINE L1 5331 5957 -213 21 0 0 0 chrX 3315232 3315253 -159284677 + AT_rich Low_complexity Low_complexity 1 21 0 234 207 0 0 chrX 3315325 3315383 -159284547 + GA-rich Low_complexity Low_complexity 1 58 0 238 324 142 14 chrX 3315579 3315727 -159284203 + L2 LINE L2 3130 3296 -17 761 102 0 8 chrX 3317458 3317576 -159282354 + (GAAA)n Simple_repeat Simple_repeat 1 117 0 1988 255 97 16 chrX 3317576 3317726 -159282204 + L1MB5 LINE L1 4169 4306 -1840 2318 74 0 3 chrX 3317726 3318025 -159281905 + AluY SINE Alu 1 298 -13 1988 255 97 16 chrX 3318025 3318732 -159281198 + L1MB5 LINE L1 4306 5095 -1051 1365 120 0 74 chrX 3318732 3318974 -159280956 + AluSx SINE Alu 1 224 -88 294 29 0 0 chrX 3318974 3319009 -159280921 + (GAAAA)n Simple_repeat Simple_repeat 2 36 0 578 251 101 45 chrX 3319014 3319593 -159280337 + L1MB5 LINE L1 5092 5720 -446 21 0 0 0 chrX 3319617 3319638 -159280292 + AT_rich Low_complexity Low_complexity 1 21 0 2143 103 6 0 chrX 3320161 3320472 -159279458 + AluSq SINE Alu 1 313 0 26 0 0 0 chrX 3320508 3320534 -159279396 + AT_rich Low_complexity Low_complexity 1 26 0 543 198 21 80 chrX 3320538 3320717 -159279213 + L1MB5 LINE L1 6014 6183 -1 268 326 6 22 chrX 3321378 3321559 -159278371 + (CA)n Simple_repeat Simple_repeat 1 178 0 378 301 3 34 chrX 3321577 3321913 -159278017 + (CA)n Simple_repeat Simple_repeat 1 325 0 426 302 0 12 chrX 3322043 3322212 -159277718 + (CA)n Simple_repeat Simple_repeat 1 167 0 1367 235 62 75 chrX 3322706 3323144 -159276786 - MER67D LTR ERV1 -8 506 75 1431 152 14 48 chrX 3323146 3323346 -159276584 + L1MA4 LINE L1 5847 6035 -265 1542 162 4 11 chrX 3323346 3323612 -159276318 - AluJo SINE Alu -1 311 48 1431 152 14 48 chrX 3323612 3323700 -159276230 + L1MA4 LINE L1 6035 6125 -175 1652 145 8 0 chrX 3323708 3323970 -159275960 - AluJb SINE Alu -1 311 48 4198 33 17 0 chrX 3323970 3324450 -159275480 - LTR2B LTR ERV1 -2 488 1 393 150 20 10 chrX 3324451 3324562 -159275368 - Alu SINE Alu -247 52 2 1923 118 13 54 chrX 3325257 3325572 -159274358 - AluSx SINE Alu -10 302 1 1924 141 3 3 chrX 3325806 3326110 -159273820 + AluSx SINE Alu 1 304 -8 560 101 60 18 chrX 3326426 3326594 -159273336 + (TCTA)n Simple_repeat Simple_repeat 3 177 0 275 218 10 0 chrX 3326633 3326734 -159273196 + (TCTA)n Simple_repeat Simple_repeat 4 105 0 194 274 27 27 chrX 3326948 3327021 -159272909 + L3 LINE CR1 1504 1576 -1 3294 170 43 19 chrX 3327701 3328347 -159271583 + L1PB4 LINE L1 5482 6143 -13 1544 167 11 28 chrX 3328893 3329180 -159270750 + AluJo SINE Alu 7 288 -24 242 114 0 23 chrX 3329183 3329227 -159270703 + (GGA)n Simple_repeat Simple_repeat 1 43 0 1234 253 63 38 chrX 3329500 3329927 -159270003 - MLT1C LTR MaLR -9 458 21 1721 161 0 40 chrX 3330024 3330348 -159269582 + AluJo SINE Alu 1 311 -1 289 240 82 96 chrX 3331136 3331194 -159268736 - MLT1J2 LTR MaLR -2 448 391 2542 55 0 3 chrX 3331194 3331506 -159268424 - AluY SINE Alu 0 311 1 289 240 82 96 chrX 3331506 3331655 -159268275 - MLT1J2 LTR MaLR -59 391 244 1441 140 18 0 chrX 3331705 3331926 -159268004 - MLT1B LTR MaLR -8 382 158 489 176 0 22 chrX 3331926 3332017 -159267913 - MLT1A2 LTR MaLR 0 374 286 562 133 67 14 chrX 3332037 3332322 -159267608 + (TCTA)n Simple_repeat Simple_repeat 1 300 0 4028 176 21 4 chrX 3332323 3333044 -159266886 - L1MB3 LINE L1 -8 6175 5443 1854 140 33 7 chrX 3333258 3333558 -159266372 - AluSx SINE Alu -4 308 1 1326 81 0 51 chrX 3333567 3333711 -159266219 + L1MA1 LINE L1 6116 6249 -53 1871 161 0 0 chrX 3333711 3334010 -159265920 + AluSx SINE Alu 1 299 -13 1326 81 0 51 chrX 3334010 3334062 -159265868 + L1MA1 LINE L1 6249 6302 0 24 0 0 0 chrX 3334062 3334086 -159265844 + AT_rich Low_complexity Low_complexity 1 24 0 430 268 14 49 chrX 3334782 3334924 -159265006 - MLT1C LTR MaLR -1 466 330 1438 137 0 0 chrX 3334924 3335175 -159264755 + AluSg/x SINE Alu 86 336 0 494 198 95 0 chrX 3335356 3335472 -159264458 + MER53 DNA DNA 2 128 -61 1811 144 10 3 chrX 3335481 3335780 -159264150 + AluJb SINE Alu 1 301 -11 31 82 0 0 chrX 3335784 3335857 -159264073 + AT_rich Low_complexity Low_complexity 1 73 0 198 339 51 0 chrX 3336286 3336345 -159263585 + L3 LINE CR1 132 193 -1384 245 270 10 0 chrX 3336447 3336547 -159263383 - HAL1 LINE L1 -124 2383 2283 402 230 17 126 chrX 3336567 3336609 -159263321 + MER87 LTR ERV1 1 46 -495 2055 117 10 7 chrX 3336609 3336917 -159263013 + AluSq SINE Alu 1 309 -4 402 230 17 126 chrX 3336917 3337048 -159262882 + MER87 LTR ERV1 46 149 -392 1630 146 0 8 chrX 3337064 3337354 -159262576 + AluJb SINE Alu 30 317 0 183 42 0 0 chrX 3337380 3337404 -159262526 + (GA)n Simple_repeat Simple_repeat 2 25 0 939 245 89 65 chrX 3337528 3338017 -159261913 + LTR8A LTR ERV1 116 727 0 566 276 100 69 chrX 3338029 3338219 -159261711 - HAL1 LINE L1 -273 2234 2051 896 149 37 50 chrX 3338219 3338380 -159261550 - FRAM SINE Alu -7 159 1 566 276 100 69 chrX 3338380 3338728 -159261202 - HAL1 LINE L1 -456 2051 1679 2628 102 9 80 chrX 3338728 3339178 -159260752 - MER4E LTR ERV1 0 766 349 21 0 0 0 chrX 3339531 3339552 -159260378 + GC_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chrX 3339671 3339692 -159260238 + GC_rich Low_complexity Low_complexity 1 21 0 22 0 0 0 chrX 3339841 3339863 -159260067 + GC_rich Low_complexity Low_complexity 1 22 0 21 0 0 0 chrX 3340053 3340074 -159259856 + GC_rich Low_complexity Low_complexity 1 21 0 303 122 0 0 chrX 3341142 3341191 -159258739 + (TC)n Simple_repeat Simple_repeat 2 50 0 2471 91 8 36 chrX 3341212 3341277 -159258653 - THE1A LTR MaLR 0 355 290 2120 104 0 3 chrX 3341277 3341574 -159258356 - AluSx SINE Alu -16 296 1 2471 91 8 36 chrX 3341574 3341871 -159258059 - THE1A LTR MaLR -65 290 3 10845 101 43 2 chrX 3341873 3343391 -159256539 - THE1A-int LTR MaLR 0 1580 1 2392 120 11 0 chrX 3343391 3343742 -159256188 - THE1A LTR MaLR 0 355 1 245 186 0 0 chrX 3343930 3343973 -159255957 - Alu SINE Alu -259 44 2 405 151 0 0 chrX 3344497 3344570 -159255360 + tRNA-Ile-ATT tRNA tRNA 1 73 -4 527 107 0 0 chrX 3344911 3344986 -159254944 + tRNA-Ile-ATT tRNA tRNA 1 75 -2 219 300 80 10 chrX 3345427 3345527 -159254403 - L2 LINE L2 -4 3309 3203 1773 143 0 53 chrX 3346294 3346615 -159253315 + AluJb SINE Alu 1 304 -8 183 194 0 0 chrX 3346861 3346892 -159253038 + L2 LINE L2 3231 3261 -11 282 283 43 58 chrX 3347280 3347418 -159252512 + MER5A DNA MER1_type 49 184 -5 243 146 21 0 chrX 3347510 3347558 -159252372 - L2 LINE L2 -205 3067 3019 207 167 0 0 chrX 3348548 3348584 -159251346 + (TCTCTG)n Simple_repeat Simple_repeat 1 36 0 202 155 87 41 chrX 3348898 3348947 -159250983 + MIR SINE MIR 68 119 -89 191 288 0 15 chrX 3348986 3349052 -159250878 - L2 LINE L2 -13 3259 3195 242 339 37 18 chrX 3349506 3349615 -159250315 - L2 LINE L2 -208 3064 2954 182 299 93 10 chrX 3349979 3350076 -159249854 - MER5A DNA MER1_type -11 178 74 1050 173 31 126 chrX 3350323 3350501 -159249429 - AluJo SINE Alu -8 304 168 1687 146 7 0 chrX 3350501 3350775 -159249155 + AluSx SINE Alu 1 276 -36 1050 173 31 126 chrX 3350775 3350914 -159249016 - AluJo SINE Alu -144 168 17 616 196 227 6 chrX 3351246 3351409 -159248521 + MER20 DNA MER1_type 2 200 -19 283 211 0 211 chrX 3351474 3351607 -159248323 + L2 LINE L2 3202 3306 -7 345 266 49 28 chrX 3351636 3351779 -159248151 - L1MC/D LINE L1 -2080 5728 5583 2156 124 0 0 chrX 3351811 3352117 -159247813 + AluSx SINE Alu 1 306 -6 229 264 144 16 chrX 3352128 3352253 -159247677 + L1ME3A LINE L1 5632 5772 -390 313 265 42 78 chrX 3352260 3352426 -159247504 + L1ME3A LINE L1 5809 5968 -202 378 211 12 170 chrX 3352698 3352761 -159247169 - MER112 DNA MER1_type -45 215 144 2108 105 7 0 chrX 3352761 3353057 -159246873 + AluSx SINE Alu 7 304 -8 378 211 12 170 chrX 3353057 3353201 -159246729 - MER112 DNA MER1_type -116 144 -21 2007 104 30 7 chrX 3353201 3353498 -159246432 - AluSx SINE Alu -8 304 1 2198 94 0 0 chrX 3353499 3353796 -159246134 - AluSx SINE Alu -15 297 1 378 211 12 170 chrX 3353796 3353832 -159246098 - MER112 DNA MER1_type -212 48 8 1606 145 100 35 chrX 3354883 3355111 -159244819 - MSTA LTR MaLR -1 427 172 2395 62 3 0 chrX 3355111 3355415 -159244515 - AluY SINE Alu -5 306 2 1606 145 100 35 chrX 3355415 3355496 -159244434 - MSTA LTR MaLR -256 172 98 2698 161 30 79 chrX 3355942 3356550 -159243380 - L1MB3 LINE L1 -4 6179 5602 1839 174 28 75 chrX 3356527 3356620 -159243310 - L1MB3 LINE L1 -1755 4391 4295 * 1849 125 49 7 chrX 3356620 3356907 -159243023 - AluSx SINE Alu -13 299 1 1839 174 28 75 chrX 3356907 3356955 -159242975 - L1MB3 LINE L1 -1851 4295 4246 1745 113 0 96 chrX 3356955 3357290 -159242640 - AluSx SINE Alu -9 303 1 1839 174 28 75 chrX 3357290 3357682 -159242248 - L1MB3 LINE L1 -1900 4246 3882 1676 155 50 4 chrX 3358337 3358615 -159241315 + AluSx SINE Alu 1 291 -21 2114 90 0 20 chrX 3358721 3359021 -159240909 + AluY SINE Alu 1 294 -17 806 261 0 0 chrX 3359139 3359304 -159240626 - AluJb SINE Alu -11 301 137 2046 104 3 14 chrX 3359437 3359734 -159240196 - AluSx SINE Alu -18 294 1 358 317 6 19 chrX 3359902 3360227 -159239703 + (CA)n Simple_repeat Simple_repeat 1 320 0 367 296 0 28 chrX 3360479 3360655 -159239275 + (CA)n Simple_repeat Simple_repeat 1 171 0 1559 219 58 96 chrX 3361128 3361577 -159238353 - MER67D LTR ERV1 0 514 87 2094 178 13 31 chrX 3361577 3361777 -159238153 + L1MA4 LINE L1 5847 6049 -251 1665 144 4 0 chrX 3361777 3362040 -159237890 - AluJo SINE Alu -1 311 48 2094 178 13 31 chrX 3362040 3362294 -159237636 + L1MA4 LINE L1 6049 6293 -7 1559 219 58 96 chrX 3362294 3362378 -159237552 - MER67D LTR ERV1 -427 87 1 2372 109 34 14 chrX 3362418 3362775 -159237155 + THE1B LTR MaLR 1 364 0 462 137 0 0 chrX 3362826 3362899 -159237031 - AluJo SINE Alu -6 306 234 1094 160 48 0 chrX 3363282 3363469 -159236461 - AluJo SINE Alu -69 243 48 2029 117 7 23 chrX 3363696 3364005 -159235925 - AluSx SINE Alu -8 304 1 1743 127 67 11 chrX 3364230 3364514 -159235416 + AluSx SINE Alu 3 302 -10 315 128 51 26 chrX 3364761 3364878 -159235052 + (TCTA)n Simple_repeat Simple_repeat 1 120 0 3158 169 50 13 chrX 3364909 3365531 -159234399 + L1PB4 LINE L1 5499 6143 -13 1323 201 18 25 chrX 3366073 3366357 -159233573 + AluJo SINE Alu 7 288 -24 273 235 25 12 chrX 3366648 3366729 -159233201 - MLT1C LTR MaLR -4 463 382 2390 57 0 0 chrX 3367566 3367864 -159232066 - AluY SINE Alu -13 298 1 692 92 20 0 chrX 3368698 3368796 -159231134 + FLAM_C SINE Alu 23 122 -21 2298 81 3 0 chrX 3368804 3369111 -159230819 - AluSx SINE Alu -4 308 1 1478 194 7 0 chrX 3369131 3369415 -159230515 + AluJo SINE Alu 3 288 -24 757 71 50 0 chrX 3370019 3370118 -159229812 - AluSq/x SINE Alu -204 108 5 1339 158 41 15 chrX 3370134 3370400 -159229530 + L1MA8 LINE L1 6017 6289 -2 2207 109 0 0 chrX 3370410 3370712 -159229218 + AluSx SINE Alu 1 302 -10 1582 138 30 0 chrX 3370742 3371011 -159228919 - L1MA5A LINE L1 0 6297 6021 1717 147 97 27 chrX 3371349 3371632 -159228298 + MLT1A1 LTR MaLR 1 314 -51 1576 83 12 51 chrX 3371632 3371885 -159228045 + MER75B DNA T2_type 1 243 0 1717 147 97 27 chrX 3371885 3371941 -159227989 + MLT1A1 LTR MaLR 314 365 0 1072 151 0 0 chrX 3372062 3372234 -159227696 - AluSq SINE Alu 0 313 142 1051 184 71 21 chrX 3372393 3372632 -159227298 - AluJb SINE Alu -59 253 3 1321 172 78 54 chrX 3372806 3373102 -159226828 - AluJo SINE Alu -9 303 1 1215 176 9 0 chrX 3373197 3373407 -159226523 - L1PA16 LINE L1 -9 6157 5946 204 209 0 47 chrX 3374178 3374264 -159225666 + (TTTG)n Simple_repeat Simple_repeat 2 83 0 * 221 134 60 45 chrX 3374204 3374271 -159225659 + (GTTTG)n Simple_repeat Simple_repeat 2 69 0 3685 131 23 29 chrX 3374440 3374517 -159225413 - L1PA16 LINE L1 -24 6142 6066 2001 186 41 117 chrX 3374517 3375177 -159224753 - LTR9 LTR ERV1 0 612 3 3685 131 23 29 chrX 3375177 3375417 -159224513 - L1PA16 LINE L1 -100 6066 5166 609 279 59 50 chrX 3375417 3375692 -159224238 - L1MD3 LINE L1 -2169 5826 5546 2625 74 148 3 chrX 3375692 3376083 -159223847 + LTR7 LTR ERV1 1 448 -2 609 279 59 50 chrX 3376083 3376165 -159223765 - L1MD3 LINE L1 -2449 5546 5466 549 61 0 49 chrX 3376471 3376522 -159223408 - MADE1 DNA Mariner -1 79 27 1799 153 0 0 chrX 3376522 3376803 -159223127 + AluSx SINE Alu 1 281 -31 243 0 0 0 chrX 3376804 3376831 -159223099 + (CA)n Simple_repeat Simple_repeat 2 28 0 549 61 0 49 chrX 3376831 3376859 -159223071 - MADE1 DNA Mariner -52 28 2 374 120 0 0 chrX 3377836 3377886 -159222044 + Alu SINE Alu 1 50 -249 352 120 0 0 chrX 3377921 3377971 -159221959 + Alu SINE Alu 1 50 -250 1617 99 0 5 chrX 3378006 3378229 -159221701 + AluSq SINE Alu 1 222 -91 218 146 42 0 chrX 3378243 3378291 -159221639 + G-rich Low_complexity Low_complexity 2 51 0 600 159 28 9 chrX 3378500 3378607 -159221323 + L1MB3 LINE L1 6065 6173 -10 697 136 36 0 chrX 3378610 3378720 -159221210 - FLAM_C SINE Alu -18 125 12 1337 163 96 4 chrX 3379777 3380028 -159219902 - AluJo SINE Alu -30 282 9 237 214 0 18 chrX 3380031 3380087 -159219843 - AluJb SINE Alu -162 140 86 1285 178 5 0 chrX 3380087 3380306 -159219624 - AluJo SINE Alu -92 220 1 2071 112 20 0 chrX 3380414 3380719 -159219211 - AluSx SINE Alu -1 311 1 2117 109 0 22 chrX 3380727 3381040 -159218890 - AluSx SINE Alu -6 306 1 969 129 0 0 chrX 3381040 3381180 -159218750 - AluJo SINE Alu -171 141 2 675 200 21 28 chrX 3381223 3381368 -159218562 - MLT1C LTR MaLR -8 459 316 741 203 98 87 chrX 3381626 3381912 -159218018 - MLT1C LTR MaLR -134 333 45 653 182 108 140 chrX 3381921 3382256 -159217674 - MLT1C LTR MaLR -143 324 1 342 309 63 37 chrX 3382354 3382545 -159217385 - MIR SINE MIR 0 262 67 2193 229 7 37 chrX 3382547 3382984 -159216946 + L1MB7 LINE L1 5630 6048 -136 2113 105 10 0 chrX 3382984 3383290 -159216640 + AluSx SINE Alu 1 309 -3 2193 229 7 37 chrX 3383290 3383415 -159216515 + L1MB7 LINE L1 6048 6175 -9 3225 135 4 4 chrX 3383428 3383947 -159215983 + L1PA16 LINE L1 5647 6165 -1 24 32 0 0 chrX 3383947 3383978 -159215952 + AT_rich Low_complexity Low_complexity 1 31 0 1934 160 0 0 chrX 3383985 3384292 -159215638 + AluSx SINE Alu 1 307 -5 270 204 0 56 chrX 3384292 3384338 -159215592 + AluSg/x SINE Alu 135 179 -123 * 330 54 0 0 chrX 3384336 3384438 -159215492 + Alu SINE Alu 234 325 0 1801 216 49 28 chrX 3384924 3385318 -159214612 + L1MB5 LINE L1 5728 6133 -41 2143 125 0 0 chrX 3385318 3385629 -159214301 + AluSx SINE Alu 2 312 0 1801 216 49 28 chrX 3385629 3385664 -159214266 + L1MB5 LINE L1 6133 6166 -8 1366 212 7 0 chrX 3385743 3386031 -159213899 + AluJo SINE Alu 1 290 -22 1230 109 6 0 chrX 3386133 3386307 -159213623 - AluSg/x SINE Alu -16 296 122 1455 186 4 8 chrX 3386413 3386677 -159213253 - AluJo SINE Alu -45 267 5 736 217 63 10 chrX 3386831 3387026 -159212904 + MLT1B LTR MaLR 1 197 -177 902 186 50 25 chrX 3387026 3387225 -159212705 - L1MB1 LINE L1 -12 6156 5953 767 214 0 0 chrX 3387263 3387403 -159212527 + MLT1B LTR MaLR 193 332 -58 1981 121 175 22 chrX 3387491 3387862 -159212068 - MSTA LTR MaLR 0 428 1 2681 184 29 6 chrX 3388184 3388700 -159211230 + L1MB1 LINE L1 5586 6113 -76 2480 94 9 0 chrX 3388700 3389038 -159210892 + L1PB1 LINE L1 5800 6144 -7 377 174 43 0 chrX 3389059 3389128 -159210802 + L1MB1 LINE L1 6092 6163 -5 22 0 0 0 chrX 3389450 3389472 -159210458 + AT_rich Low_complexity Low_complexity 1 22 0 213 132 0 0 chrX 3389954 3389992 -159209938 + (TCC)n Simple_repeat Simple_repeat 3 40 0 255 86 17 35 chrX 3390199 3390257 -159209673 + (TCC)n Simple_repeat Simple_repeat 1 57 0 615 206 12 8 chrX 3390278 3390515 -159209415 + CT-rich Low_complexity Low_complexity 1 237 0 1230 203 31 157 chrX 3390739 3390789 -159209141 + L1MB5 LINE L1 5613 5668 -506 1783 114 96 7 chrX 3390789 3391069 -159208861 + AluSx SINE Alu 1 305 -7 708 170 0 30 chrX 3391079 3391214 -159208716 + FLAM_C SINE Alu 1 131 -2 1230 203 31 157 chrX 3391214 3391274 -159208656 + L1MB5 LINE L1 5678 5744 -430 1784 158 10 0 chrX 3391274 3391577 -159208353 + AluJb SINE Alu 1 306 -6 1230 203 31 157 chrX 3391577 3391942 -159207988 + L1MB5 LINE L1 5744 6004 -170 2284 94 0 0 chrX 3391942 3392241 -159207689 + AluSx SINE Alu 6 304 -8 1230 203 31 157 chrX 3392241 3392391 -159207539 + L1MB5 LINE L1 6004 6171 -3 4414 135 12 25 chrX 3392860 3393580 -159206350 - MER50 LTR ERV1 -23 711 1 2496 73 0 0 chrX 3393584 3393898 -159206032 + MER41A LTR ERV1 1 314 -240 282 116 0 0 chrX 3394343 3394386 -159205544 + (T)n Simple_repeat Simple_repeat 1 43 0 712 216 9 0 chrX 3395026 3395174 -159204756 + L1MB2 LINE L1 5772 5930 -232 2284 122 20 58 chrX 3395176 3395328 -159204602 - LTR56 LTR ERV1 0 445 289 966 154 0 0 chrX 3395328 3395477 -159204453 - FRAM SINE Alu -17 149 1 2284 122 20 58 chrX 3395477 3395796 -159204134 - LTR56 LTR ERV1 -156 289 9 285 247 27 0 chrX 3395802 3395885 -159204045 + L1MB2 LINE L1 5928 6012 -167 1655 168 7 3 chrX 3395964 3396255 -159203675 + AluJb SINE Alu 21 312 0 1337 140 5 10 chrX 3396288 3396495 -159203435 + THE1B LTR MaLR 159 364 0 4130 134 11 11 chrX 3396590 3397031 -159202899 + MER41B LTR ERV1 1 444 -191 1963 173 16 16 chrX 3397031 3397406 -159202524 - THE1C LTR MaLR 0 375 1 4130 134 11 11 chrX 3397406 3397599 -159202331 + MER41B LTR ERV1 443 635 0 469 160 21 0 chrX 3398112 3398206 -159201724 + LTR26 LTR ERV1 1 96 -507 799 282 7 22 chrX 3398466 3398583 -159201347 + L1MD2 LINE L1 6077 6194 -165 1997 134 44 49 chrX 3398583 3398949 -159200981 + THE1B LTR MaLR 1 364 0 799 282 7 22 chrX 3398949 3399108 -159200822 + L1MD2 LINE L1 6194 6349 -10 3008 201 36 30 chrX 3399374 3400016 -159199914 + MER82 DNA MER2_type 7 652 -1 290 317 99 32 chrX 3400023 3400431 -159199499 + MLT1E LTR MaLR 20 499 -96 640 191 95 0 chrX 3401856 3401982 -159197948 - MLT1E1 LTR MaLR -110 544 407 1927 178 31 3 chrX 3402345 3402700 -159197230 - MLT1A1 LTR MaLR 0 365 1 2185 231 77 58 chrX 3403007 3403471 -159196459 - MLT1E1 LTR MaLR 0 654 173 1979 87 53 20 chrX 3403471 3403771 -159196159 - AluSq SINE Alu -1 312 3 2185 231 77 58 chrX 3403771 3403942 -159195988 - MLT1E1 LTR MaLR -481 173 7 3580 156 114 36 chrX 3403942 3404690 -159195240 - L1PA16 LINE L1 -18 6148 5343 2064 98 11 0 chrX 3404696 3405007 -159194923 + AluSx SINE Alu 1 314 0 958 144 0 54 chrX 3405007 3405221 -159194709 + AluSg/x SINE Alu 122 326 0 2347 74 3 3 chrX 3406133 3406442 -159193488 - AluSx SINE Alu -3 309 1 3437 92 54 75 chrX 3406500 3406718 -159193212 + L1PA16 LINE L1 5569 5790 -376 2271 89 20 3 chrX 3406718 3407022 -159192908 + AluSg SINE Alu 1 309 -1 3437 92 54 75 chrX 3407022 3407412 -159192518 + L1PA16 LINE L1 5790 6164 -2 2661 55 0 0 chrX 3407427 3407738 -159192192 + AluY SINE Alu 1 311 0 504 295 77 30 chrX 3407784 3408018 -159191912 + MLT1J LTR MaLR 266 510 -1 2367 178 17 5 chrX 3408669 3409091 -159190839 + MSTB1 LTR MaLR 6 432 0 1684 113 20 24 chrX 3409314 3409561 -159190369 + AluJo SINE Alu 50 295 -17 2485 81 0 0 chrX 3410005 3410300 -159189630 + AluSq SINE Alu 3 297 -16 1040 190 44 0 chrX 3410576 3410802 -159189128 + L1MB5 LINE L1 5939 6174 0 4013 110 2 2 chrX 3411094 3411648 -159188282 + MER41A LTR ERV1 1 554 0 1787 205 9 36 chrX 3411813 3412223 -159187707 + L1MC2 LINE L1 5937 6337 -7 1955 117 11 65 chrX 3412223 3412574 -159187356 + L1PB2 LINE L1 5817 6148 -3 2098 104 0 24 chrX 3412731 3413018 -159186912 + AluSx SINE Alu 1 280 -32 258 32 0 0 chrX 3413020 3413051 -159186879 + (GAAA)n Simple_repeat Simple_repeat 2 32 0 225 94 0 0 chrX 3413086 3413118 -159186812 + (ATG)n Simple_repeat Simple_repeat 2 33 0 1438 126 44 139 chrX 3413119 3413254 -159186676 + AluJo SINE Alu 1 90 -222 2256 112 3 3 chrX 3413254 3413558 -159186372 + AluSg SINE Alu 1 304 -6 1438 126 44 139 chrX 3413558 3413739 -159186191 + AluJo SINE Alu 90 287 -25 2300 112 0 0 chrX 3414236 3414532 -159185398 - AluSx SINE Alu -16 296 1 906 125 0 8 chrX 3414558 3414686 -159185244 + FLAM_C SINE Alu 1 127 -16 899 239 126 60 chrX 3415386 3415570 -159184360 + L1ME3A LINE L1 5145 5315 -855 2266 117 0 0 chrX 3415570 3415870 -159184060 + AluSx SINE Alu 1 300 -12 899 239 126 60 chrX 3415870 3415881 -159184049 + L1ME3A LINE L1 5315 5324 -846 2080 142 7 3 chrX 3415881 3416190 -159183740 + AluSx SINE Alu 1 310 -2 899 239 126 60 chrX 3416190 3416647 -159183283 + L1ME3A LINE L1 5324 5858 -312 * 1990 217 41 29 chrX 3416260 3416748 -159183182 + L1MA3 LINE L1 5477 5970 -335 * 3970 126 35 0 chrX 3416315 3416919 -159183011 + L1PA16 LINE L1 5522 6146 -20 849 192 18 0 chrX 3416928 3417095 -159182835 + L1MB3 LINE L1 5428 5597 -577 406 143 16 0 chrX 3417095 3417158 -159182772 + Charlie1 DNA MER1_type 2697 2760 -1 856 222 6 6 chrX 3417539 3417719 -159182211 + MER58A DNA MER1_type 45 224 0 2201 193 30 17 chrX 3417926 3418388 -159181542 + MER89 LTR ERV1 1 468 -91 519 186 28 11 chrX 3418452 3418629 -159181301 + (TGGA)n Simple_repeat Simple_repeat 1 180 0 682 166 29 0 chrX 3418689 3418864 -159181066 + (TGGA)n Simple_repeat Simple_repeat 1 180 0 307 208 42 0 chrX 3418878 3418998 -159180932 + (TGGA)n Simple_repeat Simple_repeat 3 127 0 615 153 5 53 chrX 3419017 3419206 -159180724 + (TGGA)n Simple_repeat Simple_repeat 1 180 0 397 218 11 0 chrX 3419218 3419305 -159180625 + MER89 LTR ERV1 472 559 0 23 54 0 0 chrX 3420158 3420195 -159179735 + AT_rich Low_complexity Low_complexity 1 37 0 1660 196 3 20 chrX 3420431 3420732 -159179198 - AluJo SINE Alu -16 296 1 581 174 22 28 chrX 3421525 3421852 -159178078 + (TCCA)n Simple_repeat Simple_repeat 1 325 0 2837 202 50 5 chrX 3422046 3422631 -159177299 + L1MB3 LINE L1 5566 6176 -7 491 225 0 5 chrX 3423086 3423308 -159176622 + (TGGA)n Simple_repeat Simple_repeat 1 220 0 253 215 25 33 chrX 3423282 3423403 -159176527 + (TGAA)n Simple_repeat Simple_repeat 4 123 0 * 478 242 6 6 chrX 3423437 3423615 -159176315 + (TGGA)n Simple_repeat Simple_repeat 1 178 0 625 217 7 0 chrX 3423630 3423908 -159176022 + (TGGA)n Simple_repeat Simple_repeat 1 280 0 801 170 0 11 chrX 3423933 3424305 -159175625 + (TGGA)n Simple_repeat Simple_repeat 1 367 0 312 352 0 0 chrX 3424306 3424397 -159175533 + (TGGG)n Simple_repeat Simple_repeat 1 91 0 705 208 0 0 chrX 3424398 3424566 -159175364 + (TGGA)n Simple_repeat Simple_repeat 2 169 0 471 202 0 0 chrX 3424578 3424692 -159175238 + (TGGA)n Simple_repeat Simple_repeat 2 115 0 192 77 0 0 chrX 3424702 3424728 -159175202 + (TG)n Simple_repeat Simple_repeat 1 26 0 2719 45 0 0 chrX 3425443 3425754 -159174176 - AluY SINE Alu 0 311 1 685 58 8 91 chrX 3425756 3425877 -159174053 + LTR36 LTR ERV1 11 121 -490 2279 79 3 0 chrX 3425878 3426169 -159173761 + AluY SINE Alu 1 292 -19 1169 127 12 0 chrX 3426169 3426335 -159173595 + LTR36 LTR ERV1 444 611 0 2242 116 0 3 chrX 3426567 3426868 -159173062 + AluSx SINE Alu 1 300 -12 2154 119 16 0 chrX 3426894 3427197 -159172733 + AluSx SINE Alu 1 308 -4 1834 198 98 30 chrX 3427671 3427796 -159172134 - MLT1D LTR MaLR -2 503 388 1730 170 3 7 chrX 3427796 3428079 -159171851 + AluJo SINE Alu 1 282 -30 1834 198 98 30 chrX 3428079 3428424 -159171506 - MLT1D LTR MaLR -117 388 1 484 168 11 0 chrX 3428572 3428667 -159171263 - L1PA11 LINE L1 0 6174 6079 444 164 0 0 chrX 3428667 3428740 -159171190 - L1P4 LINE L1 -680 5488 5416 * 4556 127 13 1 chrX 3428716 3429392 -159170538 - L1PA11 LINE L1 -81 6093 5410 1157 171 9 28 chrX 3429680 3429891 -159170039 + AluJo SINE Alu 87 293 -19 1116 124 74 109 chrX 3429904 3430187 -159169743 + L1MA8 LINE L1 6019 6291 0 207 281 0 0 chrX 3430209 3430273 -159169657 + A-rich Low_complexity Low_complexity 1 64 0 2314 102 0 0 chrX 3430273 3430566 -159169364 + AluSx SINE Alu 1 293 -19 674 186 0 0 chrX 3430652 3430765 -159169165 + FLAM_A SINE Alu 25 137 -5 2172 133 0 0 chrX 3430789 3431090 -159168840 - AluSx SINE Alu -11 301 1 605 173 27 0 chrX 3431219 3431328 -159168602 - MLT1D LTR MaLR -6 499 388 2085 145 117 25 chrX 3431328 3431691 -159168239 - MSTA LTR MaLR 0 428 25 2746 89 14 3 chrX 3431691 3432060 -159167870 + THE1C LTR MaLR 3 375 0 2085 145 117 25 chrX 3432060 3432088 -159167842 - MSTA LTR MaLR -403 25 1 1831 220 32 3 chrX 3432088 3432465 -159167465 - MLT1D LTR MaLR -113 392 5 964 162 52 0 chrX 3432797 3432951 -159166979 - AluJo SINE Alu -30 282 121 52 0 0 0 chrX 3432983 3433035 -159166895 + AT_rich Low_complexity Low_complexity 1 52 0 4479 148 3 1 chrX 3433047 3433744 -159166186 + L1PA15 LINE L1 5467 6164 -1 2123 86 61 0 chrX 3433749 3434028 -159165902 + AluSx SINE Alu 1 296 -16 186 43 0 0 chrX 3434048 3434071 -159165859 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 1413 206 11 11 chrX 3434073 3434355 -159165575 - AluJo SINE Alu -30 282 1 401 322 117 23 chrX 3434473 3434623 -159165307 - HAL1 LINE L1 -145 2362 2227 321 26 0 0 chrX 3434623 3434661 -159165269 + (CA)n Simple_repeat Simple_repeat 1 38 0 401 322 117 23 chrX 3434661 3435025 -159164905 - HAL1 LINE L1 -280 2227 1800 192 279 0 51 chrX 3435046 3435125 -159164805 + MIR SINE MIR 82 156 -106 376 236 115 115 chrX 3435206 3435545 -159164385 - HAL1 LINE L1 -698 1809 1471 2384 96 0 0 chrX 3435559 3435860 -159164070 - AluSx SINE Alu -11 301 1 433 208 3 44 chrX 3435868 3436172 -159163758 + CT-rich Low_complexity Low_complexity 1 291 0 1794 159 7 17 chrX 3436323 3436625 -159163305 + AluJb SINE Alu 1 299 -13 273 29 0 0 chrX 3436989 3437023 -159162907 + (TG)n Simple_repeat Simple_repeat 1 34 0 1935 140 25 3 chrX 3437110 3437431 -159162499 + MLT1A1 LTR MaLR 1 328 -37 257 221 13 39 chrX 3437815 3437892 -159162038 + L1M3 LINE L1 5633 5707 -473 1791 185 7 7 chrX 3437952 3438249 -159161681 - AluJb SINE Alu -15 297 1 2124 117 0 0 chrX 3438261 3438566 -159161364 - AluSx SINE Alu 0 305 1 1610 96 9 0 chrX 3438572 3438802 -159161128 - L1PA14 LINE L1 -2 6159 5928 303 49 0 0 chrX 3439155 3439196 -159160734 + (TA)n Simple_repeat Simple_repeat 1 41 0 258 111 0 0 chrX 3439196 3439236 -159160694 + (GA)n Simple_repeat Simple_repeat 1 40 0 1674 96 23 0 chrX 3439425 3439645 -159160285 - AluSg/x SINE Alu -4 308 84 1719 185 3 3 chrX 3439655 3439958 -159159972 - AluJo SINE Alu -9 303 1 1810 166 13 17 chrX 3440060 3440361 -159159569 + AluJo SINE Alu 1 300 -12 189 0 0 0 chrX 3440530 3440551 -159159379 + (CAAAAA)n Simple_repeat Simple_repeat 4 24 0 979 192 6 0 chrX 3440979 3441161 -159158769 - AluJo SINE Alu -7 305 123 249 177 32 32 chrX 3441198 3441242 -159158688 - L1M LINE L1 -2398 5410 5364 1948 115 21 10 chrX 3441242 3441530 -159158400 - AluSx SINE Alu -21 291 1 249 177 32 32 chrX 3441530 3441547 -159158383 - L1M LINE L1 -2443 5365 5349 554 67 0 0 chrX 3441590 3441665 -159158265 - L1PA5 LINE L1 0 6154 6080 4389 141 53 87 chrX 3441665 3442140 -159157790 - L1MC1 LINE L1 -2 6331 5841 1948 153 40 0 chrX 3442140 3442440 -159157490 - AluJo SINE Alu 0 312 1 4389 141 53 87 chrX 3442440 3442501 -159157429 - L1MC1 LINE L1 -492 5841 5779 2437 93 0 0 chrX 3442501 3442803 -159157127 - AluSg SINE Alu -8 302 1 2319 100 3 3 chrX 3442805 3443116 -159156814 - AluSx SINE Alu -1 311 1 4389 141 53 87 chrX 3443116 3443526 -159156404 - L1MC1 LINE L1 -555 5778 5414 523 277 128 36 chrX 3443529 3443727 -159156203 - L1ME3A LINE L1 -224 5946 5768 2227 141 30 22 chrX 3443727 3444088 -159155842 + THE1B LTR MaLR 1 364 0 523 277 128 36 chrX 3444088 3444438 -159155492 - L1ME3A LINE L1 -402 5768 5337 2093 139 3 0 chrX 3444454 3444748 -159155182 - AluJo SINE Alu -13 299 5 336 304 172 25 chrX 3444750 3445465 -159154465 - L1ME3A LINE L1 -2064 4082 3247 1471 116 9 9 chrX 3445465 3445681 -159154249 - AluSq SINE Alu -16 297 82 336 304 172 25 chrX 3445681 3445726 -159154204 - L1ME3A LINE L1 -2899 3247 3210 43 108 0 0 chrX 3445732 3445908 -159154022 + AT_rich Low_complexity Low_complexity 1 176 0 919 231 30 0 chrX 3446961 3447160 -159152770 + MER2 DNA MER2_type 1 205 -140 1139 161 9 28 chrX 3447162 3447373 -159152557 - AluJo SINE Alu -10 302 96 * 1299 131 0 53 chrX 3447371 3447577 -159152353 - AluSx SINE Alu -117 195 1 1057 128 0 0 chrX 3447876 3448024 -159151906 + FRAM SINE Alu 11 158 -18 672 194 7 28 chrX 3448276 3448420 -159151510 - MLT1C LTR MaLR 0 467 327 4363 153 33 30 chrX 3448420 3448540 -159151390 - LTR39 LTR ERV1 -28 755 637 1942 169 0 0 chrX 3448540 3448848 -159151082 + AluJb SINE Alu 1 308 -4 2307 62 0 36 chrX 3448848 3449152 -159150778 + AluY SINE Alu 1 293 -18 4363 153 33 30 chrX 3449152 3449783 -159150147 - LTR39 LTR ERV1 -145 638 1 3133 100 27 11 chrX 3449784 3450098 -159149832 + MER41B LTR ERV1 1 326 -309 1710 168 58 9 chrX 3450098 3450425 -159149505 + MER61A LTR ERV1 1 343 0 3133 100 27 11 chrX 3450425 3450559 -159149371 + MER41B LTR ERV1 326 456 -179 868 139 0 29 chrX 3450562 3450699 -159149231 + AluSg/x SINE Alu 163 295 -15 2298 103 0 0 chrX 3450721 3451013 -159148917 + AluSx SINE Alu 2 293 -19 729 219 2 26 chrX 3451160 3451288 -159148642 - L1MB2 LINE L1 -212 5956 5835 2243 98 10 7 chrX 3451288 3451593 -159148337 - AluSq SINE Alu -7 306 1 729 219 2 26 chrX 3451593 3451674 -159148256 - L1MB2 LINE L1 -333 5835 5754 612 220 22 78 chrX 3451733 3451965 -159147965 + MER20 DNA MER1_type 1 219 0 1985 125 14 3 chrX 3452172 3452461 -159147469 - AluSx SINE Alu -20 292 1 231 170 0 0 chrX 3452569 3452616 -159147314 + L1MC4 LINE L1 6659 6705 -1337 2400 86 3 3 chrX 3452791 3453095 -159146835 + AluSx SINE Alu 1 304 -8 2266 107 0 0 chrX 3453214 3453505 -159146425 - AluSx SINE Alu -21 291 1 1311 223 64 21 chrX 3453599 3453733 -159146197 + AluJo SINE Alu 1 128 -184 185 0 40 0 chrX 3453733 3453758 -159146172 + (TTG)n Simple_repeat Simple_repeat 2 27 0 1311 223 64 21 chrX 3453758 3453905 -159146025 + AluJo SINE Alu 128 294 -18 1487 211 43 0 chrX 3455261 3455560 -159144370 - AluJo SINE Alu 0 312 1 2169 98 0 0 chrX 3455744 3456018 -159143912 + AluSx SINE Alu 1 274 -38 2434 76 3 17 chrX 3456020 3456322 -159143608 - AluSq SINE Alu -15 298 1 1378 144 5 5 chrX 3456324 3456532 -159143398 + AluJb SINE Alu 102 309 -3 2286 88 0 14 chrX 3456802 3457099 -159142831 - AluSc SINE Alu -16 293 1 30 0 0 0 chrX 3457110 3457140 -159142790 + AT_rich Low_complexity Low_complexity 1 30 0 866 122 0 29 chrX 3457142 3457281 -159142649 - L1MA2 LINE L1 0 6304 6170 1598 199 0 0 chrX 3457300 3457566 -159142364 - AluJo SINE Alu -24 288 23 2445 104 0 0 chrX 3458048 3458357 -159141573 - AluSx SINE Alu -3 309 1 886 156 0 21 chrX 3458448 3458589 -159141341 + FLAM_C SINE Alu 1 138 -5 2586 54 0 0 chrX 3458656 3458953 -159140977 + AluY SINE Alu 1 297 -14 2118 110 0 4 chrX 3459101 3459415 -159140515 + AluSg SINE Alu 1 313 0 195 42 0 0 chrX 3460267 3460291 -159139639 + (CAAA)n Simple_repeat Simple_repeat 2 25 0 1801 184 0 7 chrX 3460313 3460612 -159139318 + AluJo SINE Alu 1 297 -15 330 87 0 0 chrX 3460886 3460932 -159138998 + (TTCC)n Simple_repeat Simple_repeat 1 46 0 1793 178 10 24 chrX 3460932 3461230 -159138700 - AluJo SINE Alu -18 294 1 1536 165 3 93 chrX 3461715 3462048 -159137882 + AluJo SINE Alu 1 303 -9 1374 144 137 46 chrX 3462258 3462521 -159137409 - AluJo SINE Alu -17 295 9 183 100 0 0 chrX 3463274 3463304 -159136626 + (TTTTG)n Simple_repeat Simple_repeat 2 31 0 2430 85 0 0 chrX 3463307 3463626 -159136304 - L1PA13 LINE L1 -19 6144 5826 198 0 0 0 chrX 3463626 3463648 -159136282 + (TTTG)n Simple_repeat Simple_repeat 2 23 0 1164 196 36 5 chrX 3463648 3463868 -159136062 - AluJo SINE Alu -28 284 58 2394 89 0 3 chrX 3463877 3464179 -159135751 - AluY SINE Alu -10 301 1 1923 117 3 57 chrX 3464215 3464543 -159135387 - AluSq SINE Alu 0 316 5 215 163 0 20 chrX 3465324 3465373 -159134557 + T-rich Low_complexity Low_complexity 2 49 0 305 314 0 59 chrX 3465915 3466017 -159133913 + L1MC4 LINE L1 6614 6709 -1333 * 324 252 37 30 chrX 3465938 3466053 -159133877 - L1MCa LINE L1 -1337 6985 1973 234 154 66 22 chrX 3466091 3466182 -159133748 + (TA)n Simple_repeat Simple_repeat 1 95 0 1383 72 0 0 chrX 3466191 3466357 -159133573 + AluSg SINE Alu 1 166 -144 682 158 9 11 chrX 3466373 3466534 -159133396 + L1PB4 LINE L1 5782 5901 -255 25 102 0 0 chrX 3466534 3466622 -159133308 + AT_rich Low_complexity Low_complexity 1 88 0 316 194 0 82 chrX 3466625 3466723 -159133207 - L1MC4 LINE L1 -1339 6703 6614 183 129 0 0 chrX 3466723 3466754 -159133176 + (CA)n Simple_repeat Simple_repeat 2 32 0 1265 163 112 47 chrX 3466800 3467076 -159132854 - AluJb SINE Alu -8 294 1 281 229 33 57 chrX 3468300 3468422 -159131508 + MER53 DNA DNA 37 155 -34 314 297 69 14 chrX 3468533 3468678 -159131252 - L1MD2 LINE L1 -1 6358 6206 1048 110 0 14 chrX 3468853 3468998 -159130932 + AluSq/x SINE Alu 1 143 -170 30 45 0 0 chrX 3469422 3469466 -159130464 + GC_rich Low_complexity Low_complexity 1 44 0 315 243 20 15 chrX 3471055 3471262 -159128668 + CT-rich Low_complexity Low_complexity 1 208 0 2069 102 0 7 chrX 3472317 3472592 -159127338 + AluSx SINE Alu 1 273 -39 1620 183 23 20 chrX 3472903 3473204 -159126726 + AluJb SINE Alu 1 302 -10 374 297 61 0 chrX 3473621 3473786 -159126144 - L1MD3 LINE L1 -19 7976 7802 1121 129 0 23 chrX 3473787 3473958 -159125972 - FRAM SINE Alu -10 166 1 344 260 7 84 chrX 3473958 3474112 -159125818 - L1MD2 LINE L1 -176 6183 6042 2108 99 57 0 chrX 3474126 3474408 -159125522 - AluSp SINE Alu -15 298 1 2052 164 23 3 chrX 3474619 3474973 -159124957 - MLT1A1 LTR MaLR -4 361 1 209 106 0 64 chrX 3475323 3475370 -159124560 + (TTAAA)n Simple_repeat Simple_repeat 1 44 0 449 167 0 0 chrX 3475400 3475472 -159124458 - FLAM_A SINE Alu -26 116 45 199 333 30 30 chrX 3475474 3475573 -159124357 + L2 LINE L2 3191 3289 -24 315 286 95 19 chrX 3475591 3475696 -159124234 + MER81 DNA DNA 1 113 -1 1885 148 7 13 chrX 3475837 3476141 -159123789 - AluJb SINE Alu -4 308 7 728 157 35 0 chrX 3476380 3476495 -159123435 + AluJb SINE Alu 176 294 -18 1722 162 17 24 chrX 3476504 3476801 -159123129 + AluJo SINE Alu 1 295 -17 2469 64 0 19 chrX 3476999 3477310 -159122620 + AluY SINE Alu 1 305 -6 1737 194 14 14 chrX 3477564 3477914 -159122016 + MLT1A1 LTR MaLR 14 363 -2 240 292 0 0 chrX 3478004 3478069 -159121861 - MLT1E2 LTR MaLR 0 626 562 1285 169 8 8 chrX 3478071 3478319 -159121611 + L1MA6 LINE L1 5675 5922 -378 1699 142 31 17 chrX 3478320 3478608 -159121322 - AluJb SINE Alu -20 292 1 2101 134 3 13 chrX 3479019 3479333 -159120597 + AluSx SINE Alu 1 311 -1 1132 124 0 28 chrX 3479684 3479861 -159120069 - FRAM SINE Alu -9 167 1 1730 179 10 17 chrX 3480007 3480303 -159119627 + AluJb SINE Alu 13 306 -6 4199 101 0 0 chrX 3480860 3481414 -159118516 - MER41A LTR ERV1 0 554 1 1897 168 24 0 chrX 3481592 3481890 -159118040 + AluJo SINE Alu 8 312 0 1671 158 39 32 chrX 3482088 3482218 -159117712 + AluJb SINE Alu 1 129 -183 207 0 0 0 chrX 3482218 3482241 -159117689 + (CAA)n Simple_repeat Simple_repeat 2 24 0 1671 158 39 32 chrX 3482241 3482420 -159117510 + AluJb SINE Alu 129 312 0 189 196 0 0 chrX 3482428 3482474 -159117456 + A-rich Low_complexity Low_complexity 1 46 0 315 296 22 7 chrX 3482605 3482740 -159117190 - L1M4 LINE L1 -2910 3236 3100 2285 107 0 16 chrX 3483337 3483654 -159116276 + AluSx SINE Alu 1 312 0 2242 112 3 3 chrX 3483655 3483958 -159115972 + AluSx SINE Alu 2 304 -8 263 71 0 0 chrX 3483984 3484026 -159115904 + Alu SINE Alu 258 299 -1 2083 109 6 64 chrX 3484100 3484430 -159115500 + AluSx SINE Alu 1 311 -1 200 100 25 0 chrX 3484443 3484483 -159115447 + (CAA)n Simple_repeat Simple_repeat 2 42 0 784 149 0 71 chrX 3484506 3484647 -159115283 + FLAM_C SINE Alu 3 133 0 1700 179 3 19 chrX 3485140 3485448 -159114482 + AluJo SINE Alu 1 303 -9 1700 187 0 39 chrX 3485607 3485917 -159114013 - AluJb SINE Alu -12 300 3 2003 131 7 0 chrX 3485931 3486253 -159113677 - AluSx SINE Alu 0 324 1 1924 162 17 8 chrX 3486334 3486685 -159113245 + MER47A DNA MER2_type 13 366 0 1897 125 39 0 chrX 3486685 3486996 -159112934 - MLT1A1 LTR MaLR -32 333 11 1984 124 7 0 chrX 3487315 3487590 -159112340 + AluJo SINE Alu 36 312 0 204 363 26 18 chrX 3487781 3487894 -159112036 + L2 LINE L2 2181 2294 -1020 1257 244 64 33 chrX 3487966 3488388 -159111542 - MLT1C LTR MaLR -27 440 6 663 176 60 166 chrX 3488403 3488554 -159111376 - MLT1C LTR MaLR -122 345 180 2177 91 3 30 chrX 3488554 3488882 -159111048 - AluSq SINE Alu 0 313 5 663 176 60 166 chrX 3488882 3489021 -159110909 - MLT1C LTR MaLR -287 180 102 2636 51 0 10 chrX 3489021 3489335 -159110595 - AluY SINE Alu 0 311 1 663 176 60 166 chrX 3489335 3489423 -159110507 - MLT1C LTR MaLR -365 102 6 2564 67 0 0 chrX 3490164 3490463 -159109467 + AluY SINE Alu 1 299 -12 539 219 8 8 chrX 3490464 3490592 -159109338 - MER3 DNA MER1_type -80 129 2 745 238 52 9 chrX 3490602 3490812 -159109118 + MER20 DNA MER1_type 1 219 0 303 191 0 0 chrX 3490830 3490898 -159109032 + CT-rich Low_complexity Low_complexity 1 68 0 307 191 26 17 chrX 3490921 3491036 -159108894 + (TCTA)n Simple_repeat Simple_repeat 3 118 0 237 149 0 21 chrX 3491092 3491139 -159108791 + (TCCA)n Simple_repeat Simple_repeat 3 48 0 308 131 0 16 chrX 3491139 3491200 -159108730 + (TCTA)n Simple_repeat Simple_repeat 2 61 0 737 231 42 46 chrX 3491204 3491420 -159108510 + MER20 DNA MER1_type 1 215 -4 537 237 63 90 chrX 3491591 3491994 -159107936 + LTR15 LTR ERV1 112 596 0 1841 168 7 0 chrX 3492236 3492540 -159107390 - AluJb SINE Alu -6 306 1 347 220 0 20 chrX 3492880 3492980 -159106950 - L1MB7 LINE L1 0 6184 6087 2466 82 0 0 chrX 3492990 3493295 -159106635 - AluY SINE Alu -6 305 1 1640 177 21 7 chrX 3493305 3493588 -159106342 - AluJo SINE Alu -24 288 2 1781 146 13 48 chrX 3494101 3494410 -159105520 - AluJo SINE Alu -14 298 1 2303 104 0 0 chrX 3494530 3494827 -159105103 - AluSx SINE Alu -15 297 1 1530 141 0 4 chrX 3494830 3495057 -159104873 - AluSg/x SINE Alu -2 310 85 1473 149 86 4 chrX 3495693 3495961 -159103969 + AluJo SINE Alu 3 292 -20 685 143 0 61 chrX 3495981 3496128 -159103802 + L1MB3 LINE L1 6045 6182 -1 2326 86 3 10 chrX 3496140 3496441 -159103489 + AluSx SINE Alu 7 305 -7 813 182 8 0 chrX 3496455 3496587 -159103343 + FLAM_C SINE Alu 1 133 0 1900 154 0 7 chrX 3496926 3497225 -159102705 - AluJb SINE Alu -13 299 3 284 253 12 12 chrX 3497302 3497385 -159102545 - L1ME1 LINE L1 -22 6144 6062 264 246 254 7 chrX 3497437 3497575 -159102355 - MIR SINE MIR -12 250 79 501 187 23 12 chrX 3497629 3497800 -159102130 + GA-rich Low_complexity Low_complexity 4 176 0 2253 127 0 6 chrX 3497874 3498188 -159101742 + AluSx SINE Alu 1 312 0 1087 168 24 0 chrX 3498191 3498400 -159101530 + MLT1B LTR MaLR 172 385 -5 2452 90 0 3 chrX 3498709 3499020 -159100910 - AluSg SINE Alu 0 310 1 1868 156 10 16 chrX 3499122 3499436 -159100494 - AluJo SINE Alu 0 312 1 1333 224 68 30 chrX 3499796 3500224 -159099706 - MLT1C LTR MaLR -23 444 1 409 212 223 0 chrX 3500234 3500427 -159099503 - MLT1C LTR MaLR -122 345 110 323 120 0 120 chrX 3500439 3500514 -159099416 - FLAM SINE Alu 0 133 68 281 191 64 4 chrX 3500496 3500563 -159099367 - Alu SINE Alu -249 53 1 * 410 250 10 0 chrX 3500563 3500663 -159099267 - MLT1C LTR MaLR -363 104 4 23 0 0 0 chrX 3501310 3501333 -159098597 + AT_rich Low_complexity Low_complexity 1 23 0 1604 156 21 10 chrX 3501333 3501621 -159098309 - AluSx SINE Alu -21 291 1 1237 174 123 8 chrX 3501638 3501891 -159098039 - AluJb SINE Alu -30 282 1 185 0 40 0 chrX 3501891 3501916 -159098014 + (TTTA)n Simple_repeat Simple_repeat 2 27 0 1388 155 7 69 chrX 3501916 3502220 -159097710 - AluJo SINE Alu -27 285 1 2094 97 0 0 chrX 3502547 3502826 -159097104 + AluSx SINE Alu 1 279 -33 306 0 0 0 chrX 3502826 3502860 -159097070 + (CAA)n Simple_repeat Simple_repeat 2 35 0 703 290 74 7 chrX 3503243 3503526 -159096404 - MER46C DNA MER2_type -32 306 5 1897 187 11 6 chrX 3503575 3503934 -159095996 + L1PA16 LINE L1 5806 6166 0 289 275 0 14 chrX 3504080 3504149 -159095781 - MLT1J LTR MaLR -328 183 116 1067 149 17 6 chrX 3505492 3505673 -159094257 + AluJb SINE Alu 129 311 -1 2191 184 13 33 chrX 3505749 3505937 -159093993 - L1MA9 LINE L1 -191 6121 5931 2513 114 3 14 chrX 3505937 3506305 -159093625 - THE1B LTR MaLR 0 364 1 2191 184 13 33 chrX 3506305 3506568 -159093362 - L1MA9 LINE L1 -381 5931 5679 513 126 0 2 chrX 3506954 3507161 -159092769 + AluJo SINE Alu 9 250 -62 329 129 0 16 chrX 3507255 3507317 -159092613 + (GGA)n Simple_repeat Simple_repeat 3 63 0 470 244 6 0 chrX 3507400 3507556 -159092374 + GA-rich Low_complexity Low_complexity 1 157 0 246 105 0 0 chrX 3507977 3508015 -159091915 + (TC)n Simple_repeat Simple_repeat 2 39 0 2078 154 38 3 chrX 3508908 3509252 -159090678 - MLT1A1 LTR MaLR -5 360 5 186 133 0 0 chrX 3509953 3509983 -159089947 + (TTCC)n Simple_repeat Simple_repeat 4 33 0 1299 180 120 11 chrX 3509986 3510253 -159089677 - AluJo SINE Alu -4 298 3 263 191 0 21 chrX 3510299 3510346 -159089584 + MLT1C LTR MaLR 422 467 0 23 54 0 0 chrX 3510748 3510785 -159089145 + AT_rich Low_complexity Low_complexity 1 37 0 893 172 6 0 chrX 3510793 3510956 -159088974 - AluJb SINE Alu -26 286 123 22 56 0 0 chrX 3510956 3510992 -159088938 + AT_rich Low_complexity Low_complexity 1 36 0 1284 201 123 4 chrX 3511017 3511285 -159088645 - AluJo SINE Alu -2 300 1 913 124 0 0 chrX 3511596 3511725 -159088205 + FLAM_C SINE Alu 1 129 -4 1456 132 4 0 chrX 3511739 3511966 -159087964 + AluSg/x SINE Alu 83 310 0 1790 150 3 0 chrX 3512150 3512436 -159087494 + AluJb SINE Alu 5 291 -21 583 266 31 36 chrX 3512913 3513105 -159086825 - MER20 DNA MER1_type -28 191 1 393 216 47 18 chrX 3513106 3513277 -159086653 + (TAGA)n Simple_repeat Simple_repeat 3 178 0 840 204 31 62 chrX 3513387 3513612 -159086318 - MER20 DNA MER1_type -1 218 1 450 0 0 0 chrX 3513624 3513674 -159086256 + (TGGA)n Simple_repeat Simple_repeat 3 52 0 401 131 77 36 chrX 3513715 3513883 -159086047 + (TAGA)n Simple_repeat Simple_repeat 2 176 0 925 224 28 9 chrX 3513893 3514107 -159085823 - MER20 DNA MER1_type -1 218 1 21 0 0 0 chrX 3514583 3514604 -159085326 + AT_rich Low_complexity Low_complexity 1 21 0 26 50 0 0 chrX 3514795 3514835 -159085095 + AT_rich Low_complexity Low_complexity 1 40 0 186 43 0 0 chrX 3515717 3515740 -159084190 + (CAAAAA)n Simple_repeat Simple_repeat 2 24 0 24 0 0 0 chrX 3515994 3516018 -159083912 + AT_rich Low_complexity Low_complexity 1 24 0 1718 166 0 19 chrX 3516058 3516365 -159083565 - AluJo SINE Alu -9 303 3 707 207 0 0 chrX 3516366 3516501 -159083429 - AluJo SINE Alu -176 136 2 2375 69 0 7 chrX 3516535 3516838 -159083092 + AluY SINE Alu 1 301 -10 939 134 0 0 chrX 3516849 3516991 -159082939 + AluSg/x SINE Alu 168 309 -1 2025 175 25 55 chrX 3516997 3517472 -159082458 - L1MB3 LINE L1 -63 6120 5660 1280 170 4 0 chrX 3517495 3517724 -159082206 - AluSg/x SINE Alu -10 302 73 411 218 0 0 chrX 3517796 3517897 -159082033 + (CA)n Simple_repeat Simple_repeat 1 101 0 1855 191 12 29 chrX 3518018 3518432 -159081498 - L1PB4 LINE L1 -1 6155 5749 244 191 29 29 chrX 3518439 3518455 -159081475 + L1P5 LINE L1 5476 5491 -663 1631 183 0 13 chrX 3518455 3518767 -159081163 + AluJo SINE Alu 3 310 -2 244 191 29 29 chrX 3518767 3518818 -159081112 + L1P5 LINE L1 5490 5543 -611 191 263 88 120 chrX 3519164 3519338 -159080592 + L2 LINE L2 2347 2514 -800 1416 222 13 0 chrX 3519338 3519522 -159080408 - AluJo SINE Alu -6 306 115 387 0 0 0 chrX 3519522 3519565 -159080365 + (TG)n Simple_repeat Simple_repeat 2 44 0 1416 222 13 0 chrX 3519565 3519682 -159080248 - AluJo SINE Alu -197 115 1 191 263 88 120 chrX 3519682 3519724 -159080206 + L2 LINE L2 2514 2556 -758 755 169 0 0 chrX 3519852 3519970 -159079960 + AluJo/FLAM SINE Alu 2 119 -193 1466 199 31 0 chrX 3519970 3520262 -159079668 - AluJo SINE Alu -7 305 5 2412 81 0 0 chrX 3520268 3520577 -159079353 - AluY SINE Alu -2 309 1 828 141 15 0 chrX 3520577 3520712 -159079218 - AluJo SINE Alu -175 137 1 1581 167 39 0 chrX 3521381 3521663 -159078267 - AluJo SINE Alu -16 296 4 229 185 31 0 chrX 3522055 3522120 -159077810 + CT-rich Low_complexity Low_complexity 4 70 0 1313 86 11 5 chrX 3523090 3523277 -159076653 + AluSg/x SINE Alu 125 312 0 1514 171 51 14 chrX 3523715 3524008 -159075922 - AluJo SINE Alu -8 304 1 1642 176 3 17 chrX 3524403 3524698 -159075232 + AluJb SINE Alu 1 291 -21 2228 90 7 0 chrX 3524700 3525000 -159074930 + AluSq SINE Alu 1 302 -11 1672 183 13 6 chrX 3525414 3525731 -159074199 - MLT1B LTR MaLR 0 390 72 1280 229 42 11 chrX 3525867 3526221 -159073709 + MLT1A1 LTR MaLR 1 365 0 1764 173 0 22 chrX 3528210 3528528 -159071402 + AluJb SINE Alu 2 312 0 245 96 62 48 chrX 3528606 3528752 -159071178 + (TA)n Simple_repeat Simple_repeat 1 148 0 527 41 67 58 chrX 3528778 3529381 -159070549 + (TA)n Simple_repeat Simple_repeat 1 608 0 341 211 105 0 chrX 3529446 3529541 -159070389 - MLT2B2 LTR ERVL -410 105 1 1962 159 17 11 chrX 3529545 3529904 -159070026 - MLT1A1 LTR MaLR -1 364 4 1935 191 16 0 chrX 3529953 3530319 -159069611 - MLT1B LTR MaLR -18 372 1 1302 96 0 0 chrX 3530379 3530556 -159069374 - AluSg/x SINE Alu -2 308 132 2351 77 0 0 chrX 3530557 3530854 -159069076 - AluY SINE Alu -14 297 1 679 140 0 0 chrX 3530854 3530961 -159068969 - L1PB1 LINE L1 -117 6034 5928 323 224 19 28 chrX 3530964 3531071 -159068859 - Charlie5 DNA MER1_type -273 2339 2234 276 237 30 59 chrX 3531057 3531192 -159068738 - Charlie5 DNA MER1_type -2476 136 6 * 2053 139 0 0 chrX 3532084 3532394 -159067536 - AluJb SINE Alu -2 310 1 2536 42 3 0 chrX 3532441 3532751 -159067179 - AluY SINE Alu 0 311 1 1776 173 3 6 chrX 3532821 3533133 -159066797 - AluJo SINE Alu -1 311 1 485 131 12 0 chrX 3533134 3533218 -159066712 + CT-rich Low_complexity Low_complexity 1 85 0 1001 127 0 6 chrX 3533219 3533400 -159066530 + (TCCCC)n Simple_repeat Simple_repeat 1 180 0 1316 146 13 34 chrX 3533715 3533948 -159065982 - MER46A DNA MER2_type -7 229 2 781 191 0 0 chrX 3534051 3534192 -159065738 - FLAM_C SINE Alu 0 143 3 468 0 0 0 chrX 3534332 3534384 -159065546 + (CA)n Simple_repeat Simple_repeat 1 52 0 258 309 49 16 chrX 3534386 3534509 -159065421 - L1MC5 LINE L1 -69 7892 7766 326 143 0 100 chrX 3534602 3534672 -159065258 + AluJo SINE Alu 85 147 -155 * 804 222 125 0 chrX 3534671 3534847 -159065083 + MER58A DNA MER1_type 27 224 0 1642 235 5 3 chrX 3534900 3535292 -159064638 + L1MB3 LINE L1 5790 6182 -1 294 243 35 18 chrX 3535294 3535463 -159064467 + (TA)n Simple_repeat Simple_repeat 2 173 0 80 70 0 0 chrX 3535500 3535657 -159064273 + AT_rich Low_complexity Low_complexity 1 157 0 226 296 23 6 chrX 3535716 3535892 -159064038 + (TA)n Simple_repeat Simple_repeat 2 180 0 2068 120 7 3 chrX 3536670 3536978 -159062952 - AluSg SINE Alu -1 309 1 702 151 36 130 chrX 3536988 3537044 -159062886 - L1MB5 LINE L1 -1 6179 6119 1591 182 0 7 chrX 3537044 3537340 -159062590 - AluJo SINE Alu -18 294 1 702 151 36 130 chrX 3537340 3537475 -159062455 - L1MB5 LINE L1 -61 6119 6006 492 198 116 16 chrX 3537475 3537596 -159062334 - MLT1C LTR MaLR -327 140 8 1593 188 3 13 chrX 3538566 3538875 -159061055 - AluJo SINE Alu -6 306 1 1295 139 60 0 chrX 3539620 3539821 -159060109 - LTR36 LTR ERV1 0 611 399 2104 112 3 22 chrX 3539960 3540274 -159059656 - AluSx SINE Alu -4 308 1 180 0 0 0 chrX 3540346 3540366 -159059564 + (TTTA)n Simple_repeat Simple_repeat 1 20 0 1566 160 110 10 chrX 3540372 3540571 -159059359 - L1PA15 LINE L1 -21 6144 5946 414 179 193 50 chrX 3540571 3540711 -159059219 - L1MA4 LINE L1 -362 5938 5779 718 99 9 9 chrX 3541435 3541546 -159058384 + HY1 scRNA scRNA 1 111 -1 24 0 0 0 chrX 3541552 3541576 -159058354 + AT_rich Low_complexity Low_complexity 1 24 0 4244 122 18 0 chrX 3541731 3542355 -159057575 - MER41B LTR ERV1 0 635 1 256 239 15 15 chrX 3543318 3543385 -159056545 + (TCTA)n Simple_repeat Simple_repeat 4 70 0 443 256 10 0 chrX 3543399 3543704 -159056226 + (CCCA)n Simple_repeat Simple_repeat 1 308 0 858 180 0 0 chrX 3543707 3543885 -159056045 + (TCCA)n Simple_repeat Simple_repeat 1 178 0 220 195 26 39 chrX 3543929 3544083 -159055847 + (TCTA)n Simple_repeat Simple_repeat 3 154 0 518 207 23 0 chrX 3544096 3544270 -159055660 + (TCTA)n Simple_repeat Simple_repeat 3 180 0 22 35 0 0 chrX 3544731 3544760 -159055170 + AT_rich Low_complexity Low_complexity 1 29 0 2068 98 23 10 chrX 3544929 3545236 -159054694 + AluSx SINE Alu 1 311 -1 523 235 0 13 chrX 3545857 3546010 -159053920 + CT-rich Low_complexity Low_complexity 4 154 0 341 58 0 39 chrX 3546018 3546070 -159053860 + (TTTCC)n Simple_repeat Simple_repeat 1 50 0 419 143 16 0 chrX 3546073 3546136 -159053794 - AluSp/q SINE Alu -41 272 209 2056 94 0 4 chrX 3546138 3546413 -159053517 - AluSx SINE Alu -38 274 1 1940 164 0 10 chrX 3547100 3547404 -159052526 + AluJo SINE Alu 1 301 -11 300 314 0 0 chrX 3547579 3547665 -159052265 + Charlie1 DNA MER1_type 2350 2435 -326 651 256 32 97 chrX 3547729 3547987 -159051943 - Charlie1 DNA MER1_type 0 2761 2538 1701 149 13 49 chrX 3547987 3548295 -159051635 + AluJb SINE Alu 1 297 -15 651 256 32 97 chrX 3548295 3548447 -159051483 - Charlie1 DNA MER1_type -223 2538 2378 30 21 0 21 chrX 3548701 3548730 -159051200 + AT_rich Low_complexity Low_complexity 1 30 -17 2131 126 0 0 chrX 3548730 3549023 -159050907 - AluSx SINE Alu -19 293 1 30 21 0 21 chrX 3549023 3549041 -159050889 + AT_rich Low_complexity Low_complexity 30 47 0 1756 158 13 16 chrX 3549401 3549704 -159050226 - AluJo SINE Alu -2 310 9 1890 128 3 102 chrX 3549711 3550055 -159049875 - AluJo SINE Alu -2 310 1 1298 237 93 32 chrX 3551035 3551474 -159048456 - MLT1C LTR MaLR -1 466 1 806 236 146 37 chrX 3551484 3551806 -159048124 - MLT1C LTR MaLR -122 345 5 1933 137 137 34 chrX 3552093 3552408 -159047522 + MSTA LTR MaLR 1 365 -63 2519 66 0 3 chrX 3552408 3552713 -159047217 - AluY SINE Alu -7 304 1 1933 137 137 34 chrX 3552713 3552785 -159047145 + MSTA LTR MaLR 365 428 0 1082 185 15 10 chrX 3553133 3553333 -159046597 + AluJo SINE Alu 97 297 -15 222 352 0 0 chrX 3553351 3553422 -159046508 - L2 LINE L2 -1 3271 3201 1636 156 0 59 chrX 3553437 3553744 -159046186 + AluJb SINE Alu 5 293 -19 1922 132 4 0 chrX 3553960 3554232 -159045698 - AluSx SINE Alu -39 273 1 1259 164 19 0 chrX 3554234 3554447 -159045483 - AluJb SINE Alu -9 303 87 5877 138 12 38 chrX 3554451 3555227 -159044703 - L1MA5A LINE L1 0 6297 5503 1971 138 3 10 chrX 3555227 3555523 -159044407 + AluJb SINE Alu 1 294 -18 5877 138 12 38 chrX 3555523 3555579 -159044351 - L1MA5A LINE L1 -794 5503 5447 2349 76 0 7 chrX 3555579 3555869 -159044061 - AluSq SINE Alu -3 310 23 5877 138 12 38 chrX 3555869 3556089 -159043841 - L1MA5A LINE L1 -850 5447 5271 21 36 0 0 chrX 3557086 3557114 -159042816 + AT_rich Low_complexity Low_complexity 1 28 0 2201 116 0 0 chrX 3557120 3557414 -159042516 + AluY SINE Alu 1 294 -17 1769 170 3 26 chrX 3558064 3558375 -159041555 + AluJo SINE Alu 1 304 -8 703 180 0 50 chrX 3558772 3558911 -159041019 - FLAM_C SINE Alu -1 132 1 1515 173 3 21 chrX 3559415 3559698 -159040232 - AluJo SINE Alu -14 298 21 21 0 0 0 chrX 3559750 3559771 -159040159 + AT_rich Low_complexity Low_complexity 1 21 0 324 0 0 0 chrX 3559803 3559839 -159040091 + (CA)n Simple_repeat Simple_repeat 2 37 0 21 36 0 0 chrX 3560616 3560644 -159039286 + AT_rich Low_complexity Low_complexity 1 28 0 1816 153 0 19 chrX 3560828 3561135 -159038795 - AluSx SINE Alu -11 301 1 24 0 0 0 chrX 3561868 3561892 -159038038 + AT_rich Low_complexity Low_complexity 1 24 0 623 277 5 29 chrX 3562049 3562255 -159037675 - L1MB8 LINE L1 0 6178 5978 1547 110 239 146 chrX 3562255 3562564 -159037366 - Charlie3 DNA MER1_type 0 2712 2 1262 217 7 7 chrX 3562565 3562855 -159037075 - L1MB8 LINE L1 -190 5984 5695 439 255 19 9 chrX 3562724 3562890 -159037040 - L1PA13 LINE L1 -336 5825 5662 * 1257 226 100 25 chrX 3563207 3563606 -159036324 - MLT1C LTR MaLR -17 450 22 1080 212 91 39 chrX 3563634 3563964 -159035966 - MLT1C LTR MaLR -120 347 1 1892 149 38 54 chrX 3564361 3564529 -159035401 - L1MA8 LINE L1 0 6291 6122 793 160 0 0 chrX 3564529 3564654 -159035276 - FLAM_C SINE Alu -7 126 2 1892 149 38 54 chrX 3564654 3564909 -159035021 - L1MA8 LINE L1 -169 6122 5875 430 145 14 0 chrX 3564951 3565020 -159034910 + AluSg/x SINE Alu 211 280 -32 1115 197 136 15 chrX 3565037 3565301 -159034629 - Tigger3(Golem) DNA MER2_type -2733 296 1 1872 140 10 13 chrX 3565324 3565624 -159034306 - AluJo SINE Alu -9 303 5 415 218 15 30 chrX 3565688 3565821 -159034109 + (TA)n Simple_repeat Simple_repeat 1 131 0 520 216 0 22 chrX 3565826 3566007 -159033923 + (TATG)n Simple_repeat Simple_repeat 2 178 0 242 289 25 55 chrX 3566623 3566761 -159033169 + MIR3 SINE MIR 28 162 -46 318 96 22 0 chrX 3567400 3567457 -159032473 - L1M2 LINE L1 -505 5786 5724 2045 156 0 0 chrX 3567672 3567979 -159031951 + AluJb SINE Alu 1 307 -5 313 233 14 0 chrX 3568010 3568083 -159031847 - MIR SINE MIR -119 143 70 2981 160 35 28 chrX 3568097 3568479 -159031451 - L1MA4A LINE L1 -28 6275 5883 1992 115 44 10 chrX 3568479 3568775 -159031155 - AluSx SINE Alu -6 306 1 2981 160 35 28 chrX 3568775 3568967 -159030963 - L1MA4A LINE L1 -420 5883 5694 215 304 108 20 chrX 3568996 3569098 -159030832 + MER5B DNA MER1_type 6 116 -62 2180 119 0 31 chrX 3569107 3569426 -159030504 - AluSx SINE Alu -1 311 3 563 214 42 117 chrX 3569568 3569810 -159030120 - L1MC4a LINE L1 -1759 6049 5833 2437 87 7 0 chrX 3569810 3570120 -159029810 - AluSx SINE Alu 0 312 1 563 214 42 117 chrX 3570120 3570185 -159029745 - L1MC4a LINE L1 -1975 5833 5765 1646 175 11 11 chrX 3570200 3570486 -159029444 - AluJo SINE Alu -26 286 1 28 29 0 0 chrX 3571323 3571358 -159028572 + AT_rich Low_complexity Low_complexity 1 35 0 2306 91 3 7 chrX 3572494 3572792 -159027138 - AluSx SINE Alu -15 297 1 1693 195 7 3 chrX 3573235 3573527 -159026403 + AluJb SINE Alu 1 293 -19 2277 103 3 0 chrX 3573530 3573832 -159026098 + AluSq SINE Alu 1 303 -10 438 53 0 0 chrX 3574367 3574424 -159025506 + (TG)n Simple_repeat Simple_repeat 2 58 0 1951 157 3 3 chrX 3574809 3575115 -159024815 + AluJb SINE Alu 1 306 -6 753 165 31 0 chrX 3575185 3575312 -159024618 + FLAM_C SINE Alu 2 132 -1 675 148 0 9 chrX 3575625 3575733 -159024197 + U6 snRNA snRNA 1 107 0 2346 74 17 3 chrX 3576316 3576615 -159023315 + AluSx SINE Alu 1 303 -9 183 80 0 0 chrX 3577326 3577351 -159022579 + (CAAAAA)n Simple_repeat Simple_repeat 2 26 0 432 0 0 0 chrX 3577930 3577978 -159021952 + (TG)n Simple_repeat Simple_repeat 2 49 0 707 255 51 19 chrX 3578683 3578784 -159021146 - MER58A DNA MER1_type -2197 223 127 1520 189 28 7 chrX 3578784 3579075 -159020855 + AluJo SINE Alu 6 302 -10 707 255 51 19 chrX 3579075 3579189 -159020741 - MER58A DNA MER1_type -2293 127 1 228 67 0 0 chrX 3579952 3579982 -159019948 + (TTTTG)n Simple_repeat Simple_repeat 1 30 0 1603 158 0 26 chrX 3579983 3580255 -159019675 - AluJo SINE Alu -32 280 16 310 185 61 21 chrX 3580545 3580890 -159019040 + (TA)n Simple_repeat Simple_repeat 1 358 0 29 0 0 0 chrX 3580908 3580937 -159018993 + AT_rich Low_complexity Low_complexity 1 29 0 28 0 0 0 chrX 3581122 3581150 -159018780 + AT_rich Low_complexity Low_complexity 1 28 0 2867 131 42 17 chrX 3581152 3581415 -159018515 - L1MA5A LINE L1 -6 6291 6036 2331 111 0 0 chrX 3581415 3581712 -159018218 + AluSg SINE Alu 1 297 -13 2867 131 42 17 chrX 3581712 3581974 -159017956 - L1MA5A LINE L1 -261 6036 5753 1847 170 0 19 chrX 3581978 3582289 -159017641 - AluJb SINE Alu -5 307 3 300 182 299 26 chrX 3582382 3582536 -159017394 - L1MB2 LINE L1 -7 6164 5969 180 0 0 0 chrX 3583904 3583924 -159016006 + (T)n Simple_repeat Simple_repeat 1 20 0 657 197 100 120 chrX 3584266 3584565 -159015365 - MER101 LTR ERV1 0 474 182 315 241 0 27 chrX 3584580 3584692 -159015238 - MER101 LTR ERV1 -186 288 180 256 294 16 32 chrX 3584809 3584935 -159014995 - MER101 LTR ERV1 -186 288 165 1120 199 3 77 chrX 3584944 3585231 -159014699 - MER101 LTR ERV1 -198 276 11 2749 39 0 3 chrX 3585482 3585794 -159014136 - AluY SINE Alu 0 311 1 33 25 0 0 chrX 3585880 3585920 -159014010 + AT_rich Low_complexity Low_complexity 1 40 0 865 160 0 0 chrX 3586089 3586214 -159013716 + AluJo SINE Alu 90 214 -98 289 126 32 42 chrX 3586245 3586340 -159013590 + (TAGA)n Simple_repeat Simple_repeat 3 96 0 1023 167 31 50 chrX 3586358 3586580 -159013350 - MER20 DNA MER1_type 0 219 2 495 307 100 28 chrX 3587263 3587742 -159012188 + L2 LINE L2 2729 3245 -68 378 258 44 107 chrX 3587805 3587968 -159011962 - L1MC4a LINE L1 -1958 5850 5713 2224 104 7 0 chrX 3587968 3588267 -159011663 + AluSq SINE Alu 1 301 -12 378 258 44 107 chrX 3588267 3588401 -159011529 - L1MC4a LINE L1 -2095 5713 5572 2177 115 0 0 chrX 3588402 3588688 -159011242 - AluJb SINE Alu -16 296 11 2154 137 83 21 chrX 3588699 3589086 -159010844 - L1MA7 LINE L1 -342 5949 5539 2533 70 0 0 chrX 3589213 3589512 -159010418 + AluSq SINE Alu 1 299 -14 2301 99 0 0 chrX 3589792 3590096 -159009834 - AluSq SINE Alu -9 304 1 4505 96 19 3 chrX 3590333 3590967 -159008963 + LTR9B LTR ERV1 1 644 0 198 0 0 0 chrX 3591085 3591107 -159008823 + (CAAA)n Simple_repeat Simple_repeat 2 23 0 1735 130 0 20 chrX 3591141 3591394 -159008536 + AluJo SINE Alu 4 251 -61 2121 89 36 30 chrX 3591394 3591691 -159008239 - LTR7 LTR ERV1 0 450 104 2583 58 0 6 chrX 3591691 3592004 -159007926 - AluY SINE Alu 0 311 1 2121 89 36 30 chrX 3592004 3592073 -159007857 - LTR7 LTR ERV1 -346 104 37 272 109 0 0 chrX 3592061 3592107 -159007823 + AluJo SINE Alu 257 302 0 * 452 183 113 35 chrX 3592122 3592237 -159007693 + MER63 DNA MER1_type 2 751 -311 2283 92 3 52 chrX 3592267 3592592 -159007338 - AluSq SINE Alu -4 309 1 2225 170 18 8 chrX 3593087 3593486 -159006444 + MER57A LTR ERV1 1 403 0 1654 149 51 14 chrX 3593694 3593969 -159005961 - AluJo SINE Alu -17 295 11 1991 131 24 0 chrX 3593988 3594278 -159005652 - AluSx SINE Alu -15 297 1 2423 81 7 0 chrX 3594343 3594641 -159005289 - AluY SINE Alu -11 300 1 2180 120 0 19 chrX 3594928 3595253 -159004677 - LTR8 LTR ERV1 -372 319 1 1914 140 3 29 chrX 3595977 3596285 -159003645 - AluJo SINE Alu -11 301 2 636 168 0 0 chrX 3596613 3596720 -159003210 - MER53 DNA DNA 0 189 83 933 194 6 0 chrX 3598161 3598321 -159001609 - Charlie3 DNA MER1_type -2546 164 4 539 157 0 0 chrX 3598706 3598795 -159001135 - MER4B LTR ERV1 -163 447 359 25 0 0 0 chrX 3598802 3598827 -159001103 + AT_rich Low_complexity Low_complexity 1 25 0 397 233 3 30 chrX 3598827 3599138 -159000792 + CT-rich Low_complexity Low_complexity 1 302 0 2056 131 10 0 chrX 3599683 3599981 -158999949 - AluJb SINE Alu -7 305 5 694 202 131 0 chrX 3600665 3600833 -158999097 - MER20 DNA MER1_type 0 219 30 2354 130 25 5 chrX 3601643 3602011 -158997919 - THE1C LTR MaLR 0 375 1 2066 158 0 0 chrX 3603206 3603577 -158996353 - AluSx SINE Alu 0 371 1 1750 197 16 35 chrX 3603709 3604079 -158995851 - MLT1A1 LTR MaLR -2 363 1 31 26 0 0 chrX 3604287 3604325 -158995605 + AT_rich Low_complexity Low_complexity 1 38 0 2333 102 0 0 chrX 3604492 3604787 -158995143 - AluSx SINE Alu -17 295 1 1790 164 0 32 chrX 3606364 3606674 -158993256 + AluJo SINE Alu 1 300 -12 1270 164 19 5 chrX 3607412 3607625 -158992305 + AluJb SINE Alu 73 288 -24 259 224 34 34 chrX 3607625 3607804 -158992126 + (TA)n Simple_repeat Simple_repeat 2 180 0 26 30 0 0 chrX 3607810 3607843 -158992087 + AT_rich Low_complexity Low_complexity 1 33 0 253 230 13 0 chrX 3607843 3607995 -158991935 + (TA)n Simple_repeat Simple_repeat 1 154 0 417 100 86 14 chrX 3609074 3609144 -158990786 + MLT2B1 LTR ERVL 354 428 -92 767 180 33 27 chrX 3609144 3609294 -158990636 - AluJb SINE Alu -49 263 113 269 255 118 0 chrX 3609330 3609432 -158990498 + L2 LINE L2 3197 3310 -3 355 279 41 8 chrX 3609704 3609826 -158990104 - MLT1H LTR MaLR 0 549 424 * 438 288 8 0 chrX 3609816 3609941 -158989989 + MER20 DNA MER1_type 90 215 -4 656 125 19 10 chrX 3610030 3610134 -158989796 - U6 snRNA snRNA -2 105 1 232 320 0 48 chrX 3610222 3610347 -158989583 - MLT1H-int LTR MaLR -1616 119 1 393 287 65 51 chrX 3610350 3610567 -158989363 - MLT1H LTR MaLR -3 548 333 610 224 59 51 chrX 3610603 3610906 -158989024 + MLT1H1 LTR MaLR 243 547 -2 1495 166 121 10 chrX 3611202 3611515 -158988415 - MER7A DNA MER2_type 0 346 1 4426 121 11 2 chrX 3611552 3612180 -158987750 - MER41B LTR ERV1 0 635 2 1193 123 0 3 chrX 3612615 3612976 -158986954 + (TA)n Simple_repeat Simple_repeat 1 359 0 193 286 79 0 chrX 3613807 3613870 -158986060 - L2 LINE L2 0 3313 3246 395 143 30 48 chrX 3614334 3614502 -158985428 + (TAGA)n Simple_repeat Simple_repeat 2 166 0 454 171 22 39 chrX 3614552 3614733 -158985197 + (TAGA)n Simple_repeat Simple_repeat 3 180 0 1597 134 28 0 chrX 3614908 3615155 -158984775 + L1MA7 LINE L1 5682 5935 -356 688 261 28 6 chrX 3615175 3615355 -158984575 - MER20 DNA MER1_type -6 213 30 807 174 0 0 chrX 3615497 3615629 -158984301 + AluJb SINE Alu 1 132 -180 1741 166 28 3 chrX 3615636 3615920 -158984010 + AluJb SINE Alu 6 296 -16 4274 110 23 2 chrX 3616070 3616690 -158983240 + MER41B LTR ERV1 1 633 -2 1960 157 0 7 chrX 3617099 3617404 -158982526 - AluJo SINE Alu -9 303 1 1969 187 7 12 chrX 3617416 3617822 -158982108 - L1MA3 LINE L1 0 6305 5902 1816 137 41 47 chrX 3617846 3618061 -158981869 - L1PB3 LINE L1 0 6154 5940 1804 163 0 7 chrX 3618061 3618350 -158981580 - AluJb SINE Alu -21 291 5 1816 137 41 47 chrX 3618350 3618477 -158981453 - L1PB3 LINE L1 -214 5940 5814 753 240 73 5 chrX 3618483 3618687 -158981243 + MER20 DNA MER1_type 1 218 -1 913 111 0 0 chrX 3618693 3618810 -158981120 + AluSp SINE Alu 1 117 -196 267 31 0 0 chrX 3619069 3619101 -158980829 + (TTTTTG)n Simple_repeat Simple_repeat 4 35 0 2882 57 5 94 chrX 3619690 3619923 -158980007 - L1PA10 LINE L1 -294 5874 5696 1840 81 76 0 chrX 3619923 3620159 -158979771 - AluSq SINE Alu -59 254 1 2882 57 5 94 chrX 3620159 3620361 -158979569 - L1PA10 LINE L1 -472 5696 5478 1252 71 130 0 chrX 3620361 3620545 -158979385 + L1PA10 LINE L1 5959 6166 -2 1677 209 30 5 chrX 3620769 3621142 -158978788 + L1MB5 LINE L1 5792 6173 -1 2059 133 3 0 chrX 3621153 3621500 -158978430 + AluSx SINE Alu 1 312 0 1623 138 7 67 chrX 3621731 3622028 -158977902 + AluSx SINE Alu 5 283 -29 350 130 0 0 chrX 3622223 3622277 -158977653 - MADE1 DNA Mariner -1 79 26 218 226 0 16 chrX 3622299 3622361 -158977569 + (TA)n Simple_repeat Simple_repeat 2 62 0 34 0 0 0 chrX 3622362 3622396 -158977534 + AT_rich Low_complexity Low_complexity 1 34 0 320 140 20 0 chrX 3622494 3622544 -158977386 - MER20 DNA MER1_type -1 218 168 1025 227 31 14 chrX 3622562 3622816 -158977114 - MLT2D LTR ERVL -39 481 128 2724 88 58 21 chrX 3622829 3623261 -158976669 + LTR7 LTR ERV1 1 448 -2 4608 114 68 39 chrX 3623263 3624262 -158975668 + HERVH LTR ERV1 1 903 -6810 5328 14 2 0 chrX 3624289 3624883 -158975047 - L1PA2 LINE L1 -5 6150 5556 3454 12 5 0 chrX 3624884 3625444 -158974486 + L1PA2 LINE L1 4987 5550 -605 14831 90 11 8 chrX 3625444 3627527 -158972403 + HERVH LTR ERV1 899 2987 -4726 931 128 20 0 chrX 3627521 3627669 -158972261 + HERVH LTR ERV1 3140 3290 -4423 * 3472 111 0 6 chrX 3627659 3628164 -158971766 + HERVH LTR ERV1 3492 3993 -3720 4332 137 11 3 chrX 3628166 3628823 -158971107 + HERVH LTR ERV1 4488 5149 -2564 1420 110 23 14 chrX 3628824 3629042 -158970888 + HERVH LTR ERV1 5600 5819 -1894 * 2746 64 45 0 chrX 3629040 3629415 -158970515 + HERVH LTR ERV1 7322 7713 0 2626 99 58 21 chrX 3629415 3629847 -158970083 + LTR7 LTR ERV1 1 448 -2 321 213 8 134 chrX 3629850 3629977 -158969953 - MLT2D LTR ERVL -302 112 2 236 88 0 0 chrX 3629978 3630012 -158969918 - MLT2B2 LTR ERVL -481 34 1 228 136 0 23 chrX 3630012 3630046 -158969884 - MLT2C2 LTR ERVL -431 33 1 996 187 31 58 chrX 3630100 3630325 -158969605 + MER20 DNA MER1_type 1 219 0 24 77 0 0 chrX 3630418 3630470 -158969460 + AT_rich Low_complexity Low_complexity 1 52 0 705 161 15 8 chrX 3630552 3630682 -158969248 - MLT1A1 LTR MaLR -234 131 1 328 229 0 0 chrX 3630729 3630799 -158969131 + MER69 DNA AcHobo 2456 2525 -1 26 0 0 0 chrX 3631007 3631033 -158968897 + AT_rich Low_complexity Low_complexity 1 26 0 367 118 0 0 chrX 3631041 3631092 -158968838 - AluSx SINE Alu -7 295 245 23 0 0 0 chrX 3631092 3631115 -158968815 + AT_rich Low_complexity Low_complexity 1 23 0 1653 197 3 3 chrX 3631121 3631416 -158968514 - AluJo SINE Alu -17 295 1 430 197 0 0 chrX 3631856 3631927 -158968003 - MER81 DNA DNA -21 93 23 2657 165 0 52 chrX 3632009 3632115 -158967815 - MER66A LTR ERV1 0 478 368 1893 99 4 0 chrX 3632115 3632357 -158967573 - AluSx SINE Alu -59 253 11 2657 165 0 52 chrX 3632357 3632754 -158967176 - MER66A LTR ERV1 -110 368 1 683 214 35 23 chrX 3633077 3633250 -158966680 - MER20 DNA MER1_type -26 193 19 258 32 0 0 chrX 3633607 3633638 -158966292 + (GA)n Simple_repeat Simple_repeat 1 31 0 2214 102 7 0 chrX 3634718 3635011 -158964919 - AluSx SINE Alu -17 295 1 907 131 0 65 chrX 3635178 3635331 -158964599 - FLAM_C SINE Alu 0 143 1 913 112 176 70 chrX 3635711 3635898 -158964032 + AluJo SINE Alu 85 291 -21 1008 112 0 17 chrX 3635987 3636166 -158963764 + (TTCC)n Simple_repeat Simple_repeat 3 178 0 180 111 0 0 chrX 3637099 3637126 -158962804 + (GGAA)n Simple_repeat Simple_repeat 2 28 0 1793 167 0 17 chrX 3637584 3637878 -158962052 - AluJo SINE Alu -11 301 13 2080 134 0 10 chrX 3637892 3638205 -158961725 - AluJb SINE Alu -2 310 1 915 172 7 0 chrX 3638209 3638360 -158961570 - MLT1A1 LTR MaLR -213 152 1 1741 157 0 38 chrX 3638977 3639137 -158960793 - AluJo SINE Alu -24 288 123 225 0 0 0 chrX 3639137 3639162 -158960768 + (TA)n Simple_repeat Simple_repeat 1 25 0 * 243 0 0 0 chrX 3639161 3639188 -158960742 + (GA)n Simple_repeat Simple_repeat 2 28 0 1741 157 0 38 chrX 3639162 3639188 -158960742 - AluJo SINE Alu -189 123 98 2252 90 0 0 chrX 3639188 3639465 -158960465 - AluY SINE Alu -34 277 1 1741 157 0 38 chrX 3639465 3639590 -158960340 - AluJo SINE Alu -214 98 13 2778 83 14 3 chrX 3640330 3640690 -158959240 + THE1B LTR MaLR 1 364 0 260 269 215 0 chrX 3840979 3841109 -158758821 + MLT2B1 LTR ERVL 5 162 -358 456 222 0 0 chrX 3841119 3841209 -158758721 - L1M2 LINE L1 -724 5588 5499 183 129 0 0 chrX 3841267 3841298 -158758632 + (TG)n Simple_repeat Simple_repeat 2 32 0 231 152 0 0 chrX 3841361 3841407 -158758523 + (TATG)n Simple_repeat Simple_repeat 3 48 0 1777 175 0 20 chrX 3841408 3841705 -158758225 - AluJo SINE Alu -21 291 1 408 190 131 73 chrX 3841712 3841838 -158758092 - MLT1D LTR MaLR -329 176 43 2015 148 38 40 chrX 3841838 3842330 -158757600 + LTR1B LTR ERV1 1 525 -301 992 338 113 21 chrX 3842441 3843122 -158756808 + L2 LINE L2 855 1598 -1716 1128 167 57 33 chrX 3843214 3843280 -158756650 + MLT1A1 LTR MaLR 1 64 -301 2114 158 25 0 chrX 3843280 3843634 -158756296 - THE1B LTR MaLR 0 364 2 1128 167 57 33 chrX 3843634 3843812 -158756118 + MLT1A1 LTR MaLR 64 251 -114 288 146 0 73 chrX 3843916 3844039 -158755891 + (TATATG)n Simple_repeat Simple_repeat 5 118 0 301 184 0 126 chrX 3844045 3844148 -158755782 - L1MC4 LINE L1 -1339 6703 6614 * 317 270 11 11 chrX 3844060 3844149 -158755781 + L1MC4 LINE L1 6614 6702 -1340 1524 200 21 14 chrX 3844181 3844549 -158755381 - MER47B DNA MER2_type 0 418 1 312 200 13 27 chrX 3844577 3844683 -158755247 + (TA)n Simple_repeat Simple_repeat 1 106 -42 1832 127 66 33 chrX 3844683 3845046 -158754884 + THE1C LTR MaLR 1 375 0 312 200 13 27 chrX 3845046 3845089 -158754841 + (TA)n Simple_repeat Simple_repeat 106 148 0 1519 183 23 17 chrX 3845138 3845439 -158754491 - AluJb SINE Alu -9 303 1 333 254 15 15 chrX 3845467 3845601 -158754329 + (TA)n Simple_repeat Simple_repeat 2 135 0 614 322 152 39 chrX 3845862 3846375 -158753555 + L2 LINE L2 1720 2290 -1024 2404 142 22 52 chrX 3846384 3846828 -158753102 + Tigger2a DNA MER2_type 1 431 -3 301 265 147 5 chrX 3846904 3847115 -158752815 - L1M4 LINE L1 -3194 2952 2712 1896 138 3 22 chrX 3847119 3847468 -158752462 - MER4A LTR ERV1 -3 661 261 572 134 21 10 chrX 3847468 3847565 -158752365 - MER4A LTR ERV1 -566 98 1 311 265 56 47 chrX 3847565 3847780 -158752150 - L1M4 LINE L1 -3432 2714 2498 341 123 18 0 chrX 3848782 3848839 -158751091 + Tigger3(Golem) DNA MER2_type 2916 2973 -56 364 138 0 0 chrX 3848956 3849014 -158750916 + Tigger3(Golem) DNA MER2_type 2917 2974 -55 24 0 0 0 chrX 3849038 3849062 -158750868 + AT_rich Low_complexity Low_complexity 1 24 0 22 0 0 0 chrX 3849573 3849595 -158750335 + AT_rich Low_complexity Low_complexity 1 22 0 2057 113 23 13 chrX 3849782 3850091 -158749839 + AluSq SINE Alu 1 312 -1 223 170 55 24 chrX 3851064 3851232 -158748698 + (TAGA)n Simple_repeat Simple_repeat 1 173 0 248 217 63 21 chrX 3851284 3851427 -158748503 + (TAGA)n Simple_repeat Simple_repeat 4 152 0 301 194 51 40 chrX 3851462 3851637 -158748293 + (TAGA)n Simple_repeat Simple_repeat 4 180 0 369 202 0 0 chrX 3851849 3851923 -158748007 - MLT1D LTR MaLR -327 178 111 508 277 31 6 chrX 3852017 3852176 -158747754 - MIR SINE MIR 0 262 100 739 218 7 0 chrX 3852966 3853200 -158746730 - AluJb SINE Alu 0 374 140 2206 129 0 0 chrX 3853205 3853507 -158746423 - AluSx SINE Alu -9 303 2 2376 107 0 0 chrX 3853513 3853822 -158746108 - AluSq SINE Alu -4 309 1 1844 159 10 0 chrX 3854321 3854611 -158745319 - AluJo SINE Alu -19 293 1 1923 164 31 82 chrX 3854765 3855216 -158744714 - MSTC LTR MaLR 0 428 1 1510 175 133 6 chrX 3855364 3855695 -158744235 + MSTA LTR MaLR 1 373 -55 262 312 168 70 chrX 3855823 3856441 -158743489 - L2 LINE L2 -2634 680 2 979 261 17 17 chrX 3857599 3857944 -158741986 + L1MA9 LINE L1 5943 6287 -25 183 222 0 0 chrX 3857966 3858011 -158741919 + (TA)n Simple_repeat Simple_repeat 1 45 0 2389 83 0 3 chrX 3858992 3859292 -158740638 - AluSq SINE Alu -14 299 1 1657 161 7 4 chrX 3860113 3860393 -158739537 - AluJo SINE Alu -10 302 22 488 181 14 21 chrX 3860527 3860671 -158739259 + CT-rich Low_complexity Low_complexity 3 145 0 1499 215 13 0 chrX 3860874 3861388 -158738542 - AluJb SINE Alu 0 518 1 185 50 0 75 chrX 3861388 3861400 -158738530 + (TTTC)n Simple_repeat Simple_repeat 2 180 0 22 0 0 0 chrX 3861696 3861718 -158738212 + AT_rich Low_complexity Low_complexity 1 22 0 24 0 0 0 chrX 3861996 3862020 -158737910 + AT_rich Low_complexity Low_complexity 1 24 0 1073 262 115 49 chrX 3862744 3863171 -158736759 - LTR40a LTR ERVL 0 519 65 1847 168 0 7 chrX 3863218 3863540 -158736390 - AluJb SINE Alu 0 312 1 194 255 108 39 chrX 3864273 3864375 -158735555 + MIR SINE MIR 54 162 -100 673 216 211 15 chrX 3864395 3864594 -158735336 + MLT1A1 LTR MaLR 1 238 -127 1078 115 0 0 chrX 3864701 3864857 -158735073 + AluSp/q SINE Alu 156 311 -2 349 186 70 39 chrX 3864879 3865035 -158734895 + Charlie1 DNA MER1_type 2572 2732 -29 326 153 36 29 chrX 3865057 3865194 -158734736 + (TCTA)n Simple_repeat Simple_repeat 1 138 0 2318 88 3 0 chrX 3865263 3865560 -158734370 - AluSx SINE Alu -14 298 1 411 284 100 50 chrX 3865593 3865832 -158734098 + MIR SINE MIR 5 255 -7 654 204 6 16 chrX 3866104 3866618 -158733312 + GA-rich Low_complexity Low_complexity 1 508 0 212 240 42 21 chrX 3867901 3867997 -158731933 + (CATATA)n Simple_repeat Simple_repeat 2 99 0 28 0 0 0 chrX 3868386 3868414 -158731516 + AT_rich Low_complexity Low_complexity 1 28 0 596 124 21 10 chrX 3868901 3868998 -158730932 + MER4A LTR ERV1 1 98 -566 1524 164 184 40 chrX 3868998 3869351 -158730579 + MER4A LTR ERV1 261 664 0 203 171 0 0 chrX 3869359 3869400 -158730530 + GA-rich Low_complexity Low_complexity 1 41 0 791 154 0 28 chrX 3870297 3870440 -158729490 - LTR7 LTR ERV1 -311 139 1 22 0 0 0 chrX 3870470 3870492 -158729438 + AT_rich Low_complexity Low_complexity 1 22 0 2308 114 29 24 chrX 3870565 3870943 -158728987 + Tigger2a DNA MER2_type 1 380 -54 2779 197 12 25 chrX 3870945 3871508 -158728422 + L1PA16 LINE L1 5607 6162 -4 2340 118 25 6 chrX 3872031 3872388 -158727542 + THE1B LTR MaLR 1 364 0 1159 241 25 97 chrX 3872471 3873026 -158726904 - L1ME3A LINE L1 -5 6165 5651 808 117 7 36 chrX 3873706 3873843 -158726087 + THE1C LTR MaLR 1 133 -242 910 213 28 21 chrX 3873953 3874191 -158725739 + LTR1B LTR ERV1 545 826 0 185 350 8 51 chrX 3874308 3874425 -158725505 + L2 LINE L2 2940 3051 -221 916 190 27 36 chrX 3875464 3875685 -158724245 + MER20 DNA MER1_type 1 219 0 180 0 0 0 chrX 3875698 3875718 -158724212 + (T)n Simple_repeat Simple_repeat 1 20 0 3445 172 120 33 chrX 3876260 3877020 -158722910 + LTR1B LTR ERV1 1 826 0 231 145 66 0 chrX 3877576 3877652 -158722278 + (TATAG)n Simple_repeat Simple_repeat 5 85 0 253 161 18 18 chrX 3877844 3877900 -158722030 + L1MA5A LINE L1 6034 6089 -208 1448 191 70 29 chrX 3877901 3878556 -158721374 + LTR8A LTR ERV1 1 724 -3 1107 96 71 0 chrX 3878556 3878754 -158721176 + L1MA5A LINE L1 6084 6295 -2 228 361 56 21 chrX 3878883 3879027 -158720903 - L2 LINE L2 -189 3083 2935 282 206 22 65 chrX 3879857 3880041 -158719889 + (TATAA)n Simple_repeat Simple_repeat 5 180 0 * 295 178 74 22 chrX 3880004 3880139 -158719791 + (TA)n Simple_repeat Simple_repeat 1 142 0 304 239 60 12 chrX 3880239 3880406 -158719524 + (TTATA)n Simple_repeat Simple_repeat 5 179 0 * 405 175 33 55 chrX 3880389 3880572 -158719358 + (TATAA)n Simple_repeat Simple_repeat 1 179 0 323 86 63 46 chrX 3880645 3880819 -158719111 + (TA)n Simple_repeat Simple_repeat 2 178 0 234 326 167 60 chrX 3881910 3882426 -158717504 + L2 LINE L2 1268 1838 -1476 204 184 31 0 chrX 3883681 3883779 -158716151 + (TA)n Simple_repeat Simple_repeat 1 101 0 324 0 0 0 chrX 3883829 3883865 -158716065 + (CA)n Simple_repeat Simple_repeat 2 37 0 651 173 48 7 chrX 3883866 3883983 -158715947 + (TCTA)n Simple_repeat Simple_repeat 1 112 -496 2235 131 0 0 chrX 3883983 3884295 -158715635 - AluSx SINE Alu 0 312 1 651 173 48 7 chrX 3884295 3884451 -158715479 + (TCTA)n Simple_repeat Simple_repeat 112 608 0 581 73 85 18 chrX 3884506 3884670 -158715260 + (TCTA)n Simple_repeat Simple_repeat 3 177 0 729 102 40 23 chrX 3884690 3884867 -158715063 + (TCTA)n Simple_repeat Simple_repeat 1 180 0 200 125 25 25 chrX 3884934 3884974 -158714956 + CT-rich Low_complexity Low_complexity 2 41 0 26 0 0 0 chrX 3886635 3886661 -158713269 + AT_rich Low_complexity Low_complexity 1 26 0 521 206 16 24 chrX 3887541 3887758 -158712172 + CT-rich Low_complexity Low_complexity 1 218 -314 1521 197 7 10 chrX 3887758 3888048 -158711882 - AluJb SINE Alu -23 289 1 521 206 16 24 chrX 3888048 3888078 -158711852 + CT-rich Low_complexity Low_complexity 218 532 0 790 75 47 31 chrX 3888803 3889059 -158710871 + (TCTA)n Simple_repeat Simple_repeat 1 260 0 21 57 0 0 chrX 3889566 3889601 -158710329 + AT_rich Low_complexity Low_complexity 1 35 0 3064 147 49 9 chrX 3889717 3890290 -158709640 - L1MA4 LINE L1 -5 6295 5700 884 140 6 13 chrX 3890492 3890649 -158709281 - L1MA4 LINE L1 -593 5710 5555 2126 140 19 22 chrX 3890656 3891021 -158708909 - THE1B LTR MaLR 0 364 1 2131 145 0 0 chrX 3891418 3891715 -158708215 + AluSx SINE Alu 1 297 -15 1979 143 0 16 chrX 3892298 3892606 -158707324 - AluSx SINE Alu -9 303 1 2349 107 0 0 chrX 3893228 3893536 -158706394 - AluSx SINE Alu -4 308 1 330 45 0 0 chrX 3894792 3894836 -158705094 + U5 snRNA snRNA 1 44 -72 501 66 0 13 chrX 3895085 3895161 -158704769 + L1PB3 LINE L1 6073 6147 -7 1291 191 46 8 chrX 3895722 3895963 -158703967 - AluJo SINE Alu -61 251 2 185 105 0 26 chrX 3896074 3896112 -158703818 + (TAGA)n Simple_repeat Simple_repeat 2 38 0 334 167 69 35 chrX 3896134 3896278 -158703652 + (TAGA)n Simple_repeat Simple_repeat 2 150 0 21 0 0 0 chrX 3896932 3896953 -158702977 + AT_rich Low_complexity Low_complexity 1 21 0 462 291 172 28 chrX 3896997 3897434 -158702496 + L1ME3 LINE L1 3901 4400 -1746 311 252 16 8 chrX 3897459 3897582 -158702348 + L1ME3 LINE L1 4534 4657 -1489 30 0 0 0 chrX 3897833 3897863 -158702067 + AT_rich Low_complexity Low_complexity 1 30 0 2132 136 0 0 chrX 3897990 3898291 -158701639 + AluSx SINE Alu 1 304 -8 324 0 0 0 chrX 3898291 3898327 -158701603 + (TA)n Simple_repeat Simple_repeat 2 37 0 369 287 27 18 chrX 3899121 3899344 -158700586 + L1ME3 LINE L1 5725 5949 -213 3103 232 33 33 chrX 3899485 3900449 -158699481 + MER45B DNA AcHobo 1 964 -76 1133 214 0 0 chrX 3900455 3900661 -158699269 - MER58A DNA MER1_type -6 218 13 337 166 63 46 chrX 3904006 3904181 -158695749 + (TA)n Simple_repeat Simple_repeat 2 179 0 247 107 67 0 chrX 3904197 3904272 -158695658 + (TA)n Simple_repeat Simple_repeat 2 81 0 545 225 12 0 chrX 3904311 3904471 -158695459 + (CATA)n Simple_repeat Simple_repeat 1 162 0 2376 223 25 14 chrX 3904930 3905495 -158694435 - MER7C DNA MER2_type 0 602 32 269 179 30 30 chrX 3905560 3905627 -158694303 - MLT1C LTR MaLR 0 467 401 1164 149 0 0 chrX 3905630 3905798 -158694132 + AluSg/x SINE Alu 135 302 -8 539 275 25 35 chrX 3905818 3906018 -158693912 - MLT1C LTR MaLR -176 291 94 1103 247 32 23 chrX 3906415 3906768 -158693162 - MER87 LTR ERV1 -9 547 174 552 125 0 0 chrX 3906794 3906874 -158693056 + AluS SINE Alu 1 80 -233 338 106 0 0 chrX 3906875 3906922 -158693008 - Alu SINE Alu -254 47 1 1821 176 0 3 chrX 3906922 3907218 -158692712 - AluJo SINE Alu -12 300 6 699 210 7 0 chrX 3907227 3907370 -158692560 - L1PB4 LINE L1 -3 6153 6010 2314 124 65 10 chrX 3907394 3907797 -158692133 - MSTA LTR MaLR 0 428 4 2198 113 0 7 chrX 3909344 3909645 -158690285 + AluSx SINE Alu 1 299 -13 1777 171 7 0 chrX 3909789 3910087 -158689843 + AluJb SINE Alu 1 300 -12 631 254 86 62 chrX 3910294 3910679 -158689251 + L1ME3A LINE L1 5714 6107 -63 2303 92 0 7 chrX 3911225 3911519 -158688411 + AluSx SINE Alu 1 292 -20 228 35 0 0 chrX 3911579 3911608 -158688322 + (CA)n Simple_repeat Simple_repeat 1 29 0 2370 75 3 3 chrX 3911968 3912263 -158687667 + AluSp SINE Alu 1 295 -18 255 355 70 25 chrX 3915132 3915332 -158684598 + L2 LINE L2 223 431 -2883 3804 141 25 45 chrX 3917012 3917795 -158682135 + L1PB4 LINE L1 5386 6153 -3 2218 102 3 0 chrX 3917880 3918191 -158681739 - AluSp SINE Alu 0 312 1 242 29 29 0 chrX 3918604 3918639 -158681291 + (TG)n Simple_repeat Simple_repeat 1 36 0 3885 229 20 28 chrX 3918643 3919449 -158680481 - L1MC3 LINE L1 -935 6850 6040 1571 177 35 41 chrX 3919449 3919794 -158680136 - MER2 DNA MER2_type 0 344 2 3885 229 20 28 chrX 3919794 3920038 -158679892 - L1MC3 LINE L1 -1745 6040 5806 1006 231 104 24 chrX 3920038 3920209 -158679721 - MLT1A1 LTR MaLR 0 365 209 180 0 0 0 chrX 3920209 3920229 -158679701 + (GA)n Simple_repeat Simple_repeat 2 21 0 1006 231 104 24 chrX 3920229 3920395 -158679535 - MLT1A1 LTR MaLR -156 209 1 3885 229 20 28 chrX 3920395 3920432 -158679498 - L1MC3 LINE L1 -1979 5806 5770 1118 199 4 17 chrX 3920896 3921132 -158678798 - MLT1D LTR MaLR -3 502 270 207 0 0 0 chrX 3921184 3921207 -158678723 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 1159 228 28 53 chrX 3921214 3921499 -158678431 - AluJo SINE Alu -34 278 1 681 262 26 47 chrX 3921504 3921756 -158678174 - MLT1D LTR MaLR -295 210 18 557 214 38 13 chrX 3921815 3921974 -158677956 + L1MA9 LINE L1 6112 6274 -38 1192 225 8 19 chrX 3921988 3922250 -158677680 + AluJo SINE Alu 47 305 -7 256 339 85 28 chrX 3924198 3924375 -158675555 + MER5A DNA MER1_type 1 187 -2 186 43 0 0 chrX 3924450 3924473 -158675457 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 1351 218 39 105 chrX 3925154 3925667 -158674263 - LTR8 LTR ERV1 0 691 213 602 152 0 9 chrX 3925743 3925848 -158674082 + LTR24B LTR ERV1 1 104 -472 339 226 19 19 chrX 3925893 3925999 -158673931 + L1MA10 LINE L1 6228 6333 -1 2735 180 21 16 chrX 3926052 3926618 -158673312 - LTR24B LTR ERV1 -7 569 1 2079 191 5 2 chrX 3926618 3927023 -158672907 + LTR49 LTR ERV1 30 435 -160 232 130 148 19 chrX 3927009 3927063 -158672867 + LTR48 LTR ERV1 607 667 -120 * 2654 184 39 66 chrX 3927100 3927230 -158672700 + LTR8A LTR ERV1 34 166 -561 1832 163 3 7 chrX 3927230 3927530 -158672400 - AluJb SINE Alu -9 303 5 2654 184 39 66 chrX 3927530 3928112 -158671818 + LTR8A LTR ERV1 166 727 0 462 125 12 12 chrX 3928121 3928201 -158671729 + LTR49 LTR ERV1 516 595 0 1208 210 64 42 chrX 3928279 3928467 -158671463 + MLT1A2 LTR MaLR 1 202 -172 4600 119 16 13 chrX 3928467 3929156 -158670774 + LTR8 LTR ERV1 1 691 0 1208 210 64 42 chrX 3929156 3929324 -158670606 + MLT1A2 LTR MaLR 202 365 -9 941 246 81 44 chrX 3929446 3930009 -158669921 - LTR24B LTR ERV1 -7 569 1 243 152 0 0 chrX 3930116 3930162 -158669768 + (TG)n Simple_repeat Simple_repeat 1 46 0 2000 153 44 8 chrX 3930263 3930718 -158669212 - MER61E LTR ERV1 -40 461 1 1573 185 92 3 chrX 3930921 3931256 -158668674 - MLT1A1 LTR MaLR 0 365 1 1566 206 0 3 chrX 3931739 3932021 -158667909 - AluJb SINE Alu -31 281 1 1921 134 7 7 chrX 3933438 3933728 -158666202 + AluSx SINE Alu 1 290 -22 433 236 236 78 chrX 3933761 3934296 -158665634 - MER92B LTR ERV1 -8 628 10 361 21 0 0 chrX 3934464 3934511 -158665419 - MER41B LTR ERV1 -108 527 481 2947 150 35 4 chrX 3934675 3935194 -158664736 + LTR39 LTR ERV1 1 535 -248 3615 104 11 11 chrX 3935194 3935753 -158664177 - PABL_A LTR ERV1 0 660 102 1248 134 49 45 chrX 3935861 3936107 -158663823 + THE1B LTR MaLR 118 364 0 299 313 77 15 chrX 3936183 3936378 -158663552 - ERVL LTR ERVL -1545 4219 4013 222 214 0 0 chrX 3937760 3937802 -158662128 + GA-rich Low_complexity Low_complexity 2 43 0 2226 104 14 0 chrX 3937910 3938199 -158661731 + AluSx SINE Alu 1 293 -19 201 143 0 0 chrX 3938448 3938483 -158661447 + (CAGA)n Simple_repeat Simple_repeat 3 37 0 796 176 6 6 chrX 3938483 3938659 -158661271 + GA-rich Low_complexity Low_complexity 3 178 0 770 167 21 0 chrX 3938670 3938907 -158661023 + GA-rich Low_complexity Low_complexity 1 242 0 1376 91 11 0 chrX 3940342 3940518 -158659412 + AluSx SINE Alu 2 179 -133 959 62 78 0 chrX 3940598 3940727 -158659203 + MER85 DNA T2_type 1 139 0 23 0 0 0 chrX 3940957 3940980 -158658950 + AT_rich Low_complexity Low_complexity 1 23 0 244 327 86 67 chrX 3941786 3942147 -158657783 - L2 LINE L2 0 3313 2946 2143 141 0 0 chrX 3942299 3942597 -158657333 - AluSx SINE Alu -14 298 1 29 78 0 0 chrX 3943428 3943492 -158656438 + AT_rich Low_complexity Low_complexity 1 64 0 318 132 0 0 chrX 3943816 3943869 -158656061 + (TG)n Simple_repeat Simple_repeat 2 54 0 2474 53 0 38 chrX 3944044 3944362 -158655568 + AluY SINE Alu 1 306 -5 970 126 6 55 chrX 3944905 3944929 -158655001 - L1MA2 LINE L1 -5 6299 6275 2561 105 6 3 chrX 3944929 3945290 -158654640 + THE1B LTR MaLR 3 364 0 970 126 6 55 chrX 3945290 3945447 -158654483 - L1MA2 LINE L1 -29 6275 6127 397 293 37 111 chrX 3945519 3945789 -158654141 + L2 LINE L2 969 1218 -2096 2239 149 3 0 chrX 3945854 3946222 -158653708 - L1PB4 LINE L1 -6 6150 5782 1026 92 17 11 chrX 3946237 3946411 -158653519 + (TTTC)n Simple_repeat Simple_repeat 4 178 0 2000 143 0 4 chrX 3946411 3946691 -158653239 - AluSx SINE Alu -33 279 1 664 208 0 34 chrX 3946691 3946840 -158653090 - FRAM SINE Alu -21 155 12 237 65 0 0 chrX 3946862 3946893 -158653037 + (TTTC)n Simple_repeat Simple_repeat 2 32 0 6399 197 10 26 chrX 3946896 3947585 -158652345 - L1PA15 LINE L1 -5 6160 5462 2338 70 0 17 chrX 3947585 3947885 -158652045 - AluY SINE Alu -16 295 1 6399 197 10 26 chrX 3947885 3948056 -158651874 - L1PA15 LINE L1 -703 5462 5290 1892 137 3 36 chrX 3948056 3948383 -158651547 - AluSx SINE Alu 0 312 1 6399 197 10 26 chrX 3948383 3949845 -158650085 - L1PA15 LINE L1 -875 5290 3882 2154 84 7 10 chrX 3949985 3950281 -158649649 - AluY SINE Alu -14 297 3 1915 157 0 25 chrX 3950395 3950714 -158649216 + AluJo SINE Alu 1 311 -1 429 310 74 77 chrX 3950873 3951237 -158648693 + L2 LINE L2 1970 2332 -982 1607 178 20 26 chrX 3951699 3952081 -158647849 + L1MB3 LINE L1 5659 5998 -185 404 181 29 3 chrX 3952052 3952146 -158647784 + L1MB3 LINE L1 6060 6143 -28 * 1509 205 0 35 chrX 3952149 3952437 -158647493 + AluJo SINE Alu 7 284 -28 23 33 0 0 chrX 3952484 3952514 -158647416 + AT_rich Low_complexity Low_complexity 1 30 0 413 370 31 43 chrX 3952570 3952919 -158647011 + L2 LINE L2 2570 2914 -400 2085 129 24 12 chrX 3953036 3953377 -158646553 + MLT1A1 LTR MaLR 1 345 -20 1973 120 3 17 chrX 3953439 3953739 -158646191 - AluSg SINE Alu -14 296 1 1630 164 58 0 chrX 3955199 3955473 -158644457 + AluJb SINE Alu 1 290 -22 1278 173 0 18 chrX 3956573 3956799 -158643131 + AluJo SINE Alu 83 304 -8 2260 118 0 0 chrX 3956838 3957135 -158642795 + AluSx SINE Alu 1 297 -15 327 200 0 15 chrX 3957203 3957268 -158642662 - MLT1E2 LTR MaLR -5 621 558 973 156 0 0 chrX 3957268 3957409 -158642521 + FRAM SINE Alu 20 160 -16 324 186 0 14 chrX 3957416 3957486 -158642444 - MLT1B LTR MaLR -67 438 370 2486 180 39 34 chrX 3957486 3957643 -158642287 - L1MB3 LINE L1 -56 6127 5972 4969 76 8 13 chrX 3957643 3958314 -158641616 + PABL_B LTR ERV1 1 667 0 2486 180 39 34 chrX 3958314 3958403 -158641527 - L1MB3 LINE L1 -211 5972 5885 2102 177 18 0 chrX 3958403 3958799 -158641131 + MER57A LTR ERV1 1 403 0 2486 180 39 34 chrX 3958799 3959117 -158640813 - L1MB3 LINE L1 -298 5885 5559 2050 98 0 4 chrX 3959218 3959484 -158640446 - AluSq SINE Alu -48 265 1 1631 184 0 27 chrX 3959501 3959795 -158640135 - AluJb SINE Alu -24 288 3 939 193 6 0 chrX 3959797 3959973 -158639957 - MLT1B LTR MaLR -213 177 1 1167 136 5 35 chrX 3960728 3960951 -158638979 - AluJo SINE Alu 0 306 90 1828 179 0 0 chrX 3961114 3961438 -158638492 + L1MA9 LINE L1 5464 5787 -525 606 123 29 29 chrX 3961448 3961619 -158638311 + (TCTA)n Simple_repeat Simple_repeat 4 174 0 634 130 11 43 chrX 3961662 3961846 -158638084 + (TCTA)n Simple_repeat Simple_repeat 3 180 0 1266 228 72 70 chrX 3961847 3962317 -158637613 + L1MA9 LINE L1 5804 6274 -38 21 0 0 0 chrX 3962318 3962339 -158637591 + AT_rich Low_complexity Low_complexity 1 21 0 776 156 0 15 chrX 3962594 3962729 -158637201 + FLAM_C SINE Alu 1 133 -10 1590 160 0 70 chrX 3963751 3964051 -158635879 + AluJo SINE Alu 1 279 -33 357 24 0 0 chrX 3965376 3965418 -158634512 + (TA)n Simple_repeat Simple_repeat 1 42 0 780 130 22 29 chrX 3965528 3965666 -158634264 - AluJo SINE Alu -175 137 1 280 85 21 0 chrX 3966617 3966664 -158633266 - MADE1 DNA Mariner 0 80 33 207 100 0 0 chrX 3966924 3966954 -158632976 + (A)n Simple_repeat Simple_repeat 1 30 0 286 179 0 0 chrX 3967733 3967789 -158632141 + L1MA9 LINE L1 5943 5998 -191 1160 194 48 39 chrX 3967863 3968023 -158631907 + L1MA9 LINE L1 5995 6152 -160 459 0 0 0 chrX 3968023 3968074 -158631856 + (CA)n Simple_repeat Simple_repeat 1 51 0 1160 194 48 39 chrX 3968074 3968094 -158631836 + L1MA9 LINE L1 6152 6170 -142 2473 169 50 67 chrX 3968094 3968717 -158631213 - LTR9 LTR ERV1 0 612 1 1160 194 48 39 chrX 3968717 3968845 -158631085 + L1MA9 LINE L1 6170 6307 -5 23 0 0 0 chrX 3969392 3969415 -158630515 + AT_rich Low_complexity Low_complexity 1 23 0 723 118 31 16 chrX 3969525 3969762 -158630168 + (TCTA)n Simple_repeat Simple_repeat 1 240 0 868 139 10 19 chrX 3969800 3970117 -158629813 + (TCTA)n Simple_repeat Simple_repeat 1 313 0 467 182 7 26 chrX 3970140 3970294 -158629636 + (TCTA)n Simple_repeat Simple_repeat 3 153 0 323 179 8 12 chrX 3970302 3970425 -158629505 - Tigger2 DNA MER2_type 0 2718 2554 * 772 208 19 51 chrX 3970424 3970640 -158629290 - Tigger2 DNA MER2_type -2508 210 2 696 285 112 19 chrX 3971189 3971456 -158628474 - MLT1E LTR MaLR -11 582 291 731 136 32 16 chrX 3971952 3972077 -158627853 + FLAM_A SINE Alu 16 142 0 334 267 159 11 chrX 3972147 3972323 -158627607 + L1ME3A LINE L1 5311 5512 -650 1814 179 0 0 chrX 3972356 3972668 -158627262 + AluJo SINE Alu 1 312 0 470 308 77 15 chrX 3972673 3972946 -158626984 + L1ME3A LINE L1 5594 5883 -287 2539 59 3 0 chrX 3972953 3973258 -158626672 + AluY SINE Alu 1 306 -5 236 264 33 41 chrX 3973302 3973423 -158626507 + L1ME3A LINE L1 6046 6165 -5 2272 88 3 7 chrX 3973861 3974166 -158625764 - AluSc SINE Alu -5 304 1 2228 135 106 34 chrX 3976168 3976564 -158623366 - L1PA16 LINE L1 -45 6121 5688 2377 90 10 0 chrX 3976564 3976865 -158623065 - AluSc SINE Alu -5 304 1 2228 135 106 34 chrX 3976865 3976911 -158623019 - L1PA16 LINE L1 -478 5688 5647 23 86 0 0 chrX 3976936 3976994 -158622936 + AT_rich Low_complexity Low_complexity 1 58 0 571 213 0 0 chrX 3977843 3977951 -158621979 - AluJb SINE Alu -23 289 182 25 0 0 0 chrX 3977962 3977987 -158621943 + AT_rich Low_complexity Low_complexity 1 25 0 729 160 8 0 chrX 3978050 3978175 -158621755 + MER57A LTR ERV1 2 127 -276 269 239 11 54 chrX 3978339 3978431 -158621499 + (CATA)n Simple_repeat Simple_repeat 4 91 0 236 322 0 0 chrX 3978431 3978521 -158621409 - L1MC4 LINE L1 -1339 6703 6614 346 194 0 60 chrX 3978526 3978849 -158621081 + (TA)n Simple_repeat Simple_repeat 1 303 0 219 226 9 17 chrX 3978887 3978940 -158620990 + (TA)n Simple_repeat Simple_repeat 1 53 -61 2601 131 5 38 chrX 3978940 3979389 -158620541 - Tigger2a DNA MER2_type 0 434 1 219 226 9 17 chrX 3979389 3979450 -158620480 + (TA)n Simple_repeat Simple_repeat 53 114 0 282 179 0 0 chrX 3979886 3979942 -158619988 + (TG)n Simple_repeat Simple_repeat 2 57 0 21 89 0 0 chrX 3980131 3980187 -158619743 + AT_rich Low_complexity Low_complexity 1 56 0 370 256 24 18 chrX 3980280 3980444 -158619486 + (TA)n Simple_repeat Simple_repeat 1 165 0 341 273 16 44 chrX 3980383 3980566 -158619364 + (CATATA)n Simple_repeat Simple_repeat 2 179 0 * 298 275 158 18 chrX 3981092 3981263 -158618667 - MIR SINE MIR -40 222 28 2198 105 7 0 chrX 3981636 3981931 -158617999 - AluSx SINE Alu -15 297 1 300 27 0 0 chrX 3982381 3982418 -158617512 + (CA)n Simple_repeat Simple_repeat 2 38 0 1508 170 11 11 chrX 3982448 3982754 -158617176 - AluSx SINE Alu 0 306 1 400 122 22 78 chrX 3982858 3983038 -158616892 + (TTATA)n Simple_repeat Simple_repeat 1 170 0 27 49 0 0 chrX 3983044 3983085 -158616845 + AT_rich Low_complexity Low_complexity 1 41 0 219 200 29 0 chrX 3983150 3983220 -158616710 + (TA)n Simple_repeat Simple_repeat 1 72 0 35 54 0 0 chrX 3983220 3983276 -158616654 + AT_rich Low_complexity Low_complexity 1 56 0 475 260 94 43 chrX 3983435 3983467 -158616463 - MLT1G LTR MaLR -2 588 559 1376 193 128 21 chrX 3983467 3983850 -158616080 - MSTB LTR MaLR 0 426 3 475 260 94 43 chrX 3983850 3984052 -158615878 - MLT1G LTR MaLR -31 559 342 262 245 170 68 chrX 3984045 3984192 -158615738 - MLT1G LTR MaLR -332 223 62 * 1636 175 3 29 chrX 3984193 3984501 -158615429 - AluJo SINE Alu -7 305 6 1675 177 3 23 chrX 3985063 3985368 -158614562 - AluJb SINE Alu -13 299 1 568 0 65 0 chrX 3986134 3986211 -158613719 + (TTTTA)n Simple_repeat Simple_repeat 2 83 0 1596 175 0 34 chrX 3986213 3986505 -158613425 - AluJo SINE Alu -30 282 1 209 222 0 0 chrX 3986544 3986589 -158613341 + MIR SINE MIR 218 262 0 22 0 0 0 chrX 3986740 3986762 -158613168 + AT_rich Low_complexity Low_complexity 1 22 0 2137 136 21 42 chrX 3987527 3987909 -158612021 - THE1C LTR MaLR -1 374 1 223 236 0 0 chrX 3988200 3988255 -158611675 + (TG)n Simple_repeat Simple_repeat 2 56 0 262 333 14 14 chrX 3989232 3989379 -158610551 - MIR3 SINE MIR -11 197 51 269 116 23 0 chrX 3989900 3989943 -158609987 + MLT1D LTR MaLR 6 49 -456 253 213 43 0 chrX 3989944 3989991 -158609939 + MLT1D LTR MaLR 1 49 -456 261 163 23 0 chrX 3989998 3990041 -158609889 + MLT1D LTR MaLR 7 50 -455 285 140 40 40 chrX 3990042 3990092 -158609838 + MLT1D LTR MaLR 1 50 -455 308 143 20 0 chrX 3990093 3990142 -158609788 + MLT1D LTR MaLR 1 50 -455 298 189 19 0 chrX 3990143 3990196 -158609734 + MLT1D LTR MaLR 1 54 -451 255 167 24 0 chrX 3990189 3990231 -158609699 + MLT1D LTR MaLR 8 50 -455 * 285 116 47 0 chrX 3990232 3990275 -158609655 + MLT1D LTR MaLR 1 45 -460 263 240 20 0 chrX 3990282 3990332 -158609598 + MLT1D LTR MaLR 1 51 -454 300 213 107 0 chrX 3990332 3990407 -158609523 + MLT1D LTR MaLR 1 83 -422 1691 222 96 14 chrX 3990509 3990853 -158609077 + MLT1D LTR MaLR 43 430 -75 3028 93 7 0 chrX 3990853 3991271 -158608659 - L1PA13 LINE L1 0 6163 5743 1691 222 96 14 chrX 3991271 3991354 -158608576 + MLT1D LTR MaLR 430 505 0 510 191 44 7 chrX 3991960 3992096 -158607834 + MER96B DNA MER1_type? 81 221 -196 24 0 0 0 chrX 3992194 3992218 -158607712 + AT_rich Low_complexity Low_complexity 1 24 0 1562 163 0 23 chrX 3992221 3992445 -158607485 - AluSx SINE Alu -53 259 40 5118 76 3 39 chrX 3992445 3993159 -158606771 + LTR12 LTR ERV1 1 688 0 1562 163 0 23 chrX 3993159 3993192 -158606738 - AluSx SINE Alu -272 40 8 * 2038 211 48 52 chrX 3993189 3993591 -158606339 - L1MB7 LINE L1 -61 6123 5724 1406 33 33 0 chrX 3993591 3993773 -158606157 - L1MA1 LINE L1 -4 6298 6111 2038 211 48 52 chrX 3993773 3994037 -158605893 - L1MB7 LINE L1 -460 5724 5460 233 167 0 0 chrX 3994083 3994131 -158605799 - L1M4c LINE L1 -3948 2698 2651 1542 232 64 127 chrX 3994199 3995282 -158604648 - L1M4c LINE L1 -5512 1030 16 1657 201 3 23 chrX 3996239 3996548 -158603382 + AluJb SINE Alu 1 303 -9 505 226 34 45 chrX 3997076 3997253 -158602677 + MER96B DNA MER1_type? 1 175 -242 2559 52 3 0 chrX 3997324 3997631 -158602299 - AluY SINE Alu -3 308 1 961 245 21 10 chrX 3997794 3998152 -158601778 + MLT1B LTR MaLR 1 343 -124 911 261 26 15 chrX 3998156 3998428 -158601502 + MLT1C LTR MaLR 193 467 0 1599 155 143 103 chrX 3999292 3999788 -158600142 - L1MB3 LINE L1 -7 6176 5661 572 158 18 26 chrX 3999788 3999884 -158600046 - AluJo/FRAM SINE Alu 0 312 216 1478 156 3 90 chrX 3999884 4000185 -158599745 - AluJb SINE Alu -37 275 1 572 158 18 26 chrX 4000185 4000202 -158599728 - AluJo/FRAM SINE Alu -96 216 200 253 173 19 0 chrX 4000202 4000254 -158599676 - L1MB3 LINE L1 -647 5658 5606 369 119 104 0 chrX 4000254 4000321 -158599609 - MADE1 DNA Mariner 0 80 7 791 261 20 5 chrX 4000652 4000855 -158599075 - MER58A DNA MER1_type 0 224 19 807 204 91 72 chrX 4001198 4001605 -158598325 - MLT2B1 LTR ERVL 0 520 1 1274 84 6 12 chrX 4001641 4001807 -158598123 - AluSp SINE Alu -16 297 133 545 228 35 17 chrX 4001914 4002078 -158597852 + MLT1A1 LTR MaLR 216 365 0 1349 186 48 35 chrX 4002218 4002354 -158597576 + MER77 LTR ERV1 274 407 -198 2257 94 0 17 chrX 4002354 4002653 -158597277 + AluY SINE Alu 1 294 -17 1349 186 48 35 chrX 4002653 4002827 -158597103 + MER77 LTR ERV1 407 588 -17 830 239 0 0 chrX 4003266 4003429 -158596501 - FRAM SINE Alu -16 160 1 2009 146 31 29 chrX 4004387 4004772 -158595158 - MLT1B LTR MaLR -4 386 1 2114 113 49 0 chrX 4004916 4005200 -158594730 + AluSx SINE Alu 1 298 -14 1714 167 31 7 chrX 4005344 4005631 -158594299 + AluJo SINE Alu 1 294 -18 691 142 15 8 chrX 4005631 4005765 -158594165 + GA-rich Low_complexity Low_complexity 1 135 0 574 254 86 10 chrX 4005987 4006184 -158593746 + MER20 DNA MER1_type 4 215 -4 23 0 0 0 chrX 4007286 4007309 -158592621 + AT_rich Low_complexity Low_complexity 1 23 0 2679 158 13 22 chrX 4007447 4007732 -158592198 - Tigger4(Zombi) DNA MER2_type -55 2676 2397 1875 164 27 6 chrX 4007732 4008062 -158591868 + MER1B DNA MER1_type 1 337 0 2679 158 13 22 chrX 4008062 4008314 -158591616 - Tigger4(Zombi) DNA MER2_type -334 2397 2144 1753 139 13 3 chrX 4008320 4008621 -158591309 - Tigger4(Zombi) DNA MER2_type -2159 572 269 1040 122 109 0 chrX 4008632 4008788 -158591142 - AluSg/x SINE Alu 0 312 140 2217 120 0 0 chrX 4008790 4009090 -158590840 - AluSx SINE Alu -12 300 1 1508 135 7 52 chrX 4009090 4009378 -158590552 - Tigger4(Zombi) DNA MER2_type -2455 276 2 672 124 80 7 chrX 4009776 4009913 -158590017 - L1M LINE L1 -889 5411 5265 308 261 0 0 chrX 4009932 4009997 -158589933 + MER2 DNA MER2_type 280 344 -1 1650 202 70 30 chrX 4011963 4012209 -158587721 - MER50 LTR ERV1 0 734 462 2418 114 28 17 chrX 4012209 4012569 -158587361 + THE1B LTR MaLR 1 364 0 1650 202 70 30 chrX 4012569 4012753 -158587177 - MER50 LTR ERV1 -272 462 287 2962 146 60 86 chrX 4012787 4013459 -158586471 + LTR8A LTR ERV1 1 654 -73 2055 136 0 23 chrX 4013459 4013768 -158586162 - AluSx SINE Alu -10 302 1 2962 146 60 86 chrX 4013768 4013841 -158586089 + LTR8A LTR ERV1 654 727 0 2014 131 3 0 chrX 4014175 4014492 -158585438 + AluSx SINE Alu 1 318 0 423 0 0 0 chrX 4015417 4015464 -158584466 + (CA)n Simple_repeat Simple_repeat 2 48 0 2351 57 3 0 chrX 4015710 4016038 -158583892 - AluY SINE Alu 0 329 1 22 35 0 0 chrX 4016192 4016221 -158583709 + AT_rich Low_complexity Low_complexity 1 29 0 197 33 33 0 chrX 4016313 4016343 -158583587 + (TTTTA)n Simple_repeat Simple_repeat 4 34 0 1487 176 3 83 chrX 4016352 4016665 -158583265 - AluJb SINE Alu -24 288 1 23 33 0 0 chrX 4016702 4016732 -158583198 + AT_rich Low_complexity Low_complexity 1 30 0 21 71 0 0 chrX 4018822 4018864 -158581066 + AT_rich Low_complexity Low_complexity 1 42 0 273 119 0 0 chrX 4019562 4019604 -158580326 + (CA)n Simple_repeat Simple_repeat 2 43 0 563 175 24 0 chrX 4019789 4020008 -158579922 + CT-rich Low_complexity Low_complexity 1 224 0 364 186 32 8 chrX 4020043 4020167 -158579763 + CT-rich Low_complexity Low_complexity 2 128 0 2420 203 30 16 chrX 4020200 4020720 -158579210 - MLT2B3 LTR ERVL -35 512 1 2236 70 0 7 chrX 4020720 4021031 -158578899 + AluY SINE Alu 1 309 0 21 0 0 0 chrX 4021524 4021545 -158578385 + AT_rich Low_complexity Low_complexity 1 21 0 702 154 0 0 chrX 4022517 4022621 -158577309 - FRAM SINE Alu -36 140 37 1349 196 0 41 chrX 4022628 4022898 -158577032 - AluJo SINE Alu -24 288 30 294 375 71 6 chrX 4022960 4023128 -158576802 - MIR SINE MIR -37 225 47 1282 221 46 14 chrX 4023439 4023810 -158576120 + L1MC3 LINE L1 7026 7408 -377 1690 135 3 30 chrX 4023810 4024165 -158575765 - MER4A LTR ERV1 0 664 261 239 116 47 0 chrX 4024165 4024208 -158575722 - MER4A LTR ERV1 -566 98 54 249 263 13 0 chrX 4024235 4024311 -158575619 + L1MC3 LINE L1 7405 7481 -304 833 166 11 17 chrX 4025648 4025970 -158573960 + CT-rich Low_complexity Low_complexity 1 320 0 1014 176 0 6 chrX 4026213 4026372 -158573558 + AluJb SINE Alu 129 286 -26 456 213 110 55 chrX 4027482 4027646 -158572284 + MER58B DNA MER1_type 168 340 -1 318 106 0 0 chrX 4027906 4027953 -158571977 + (TA)n Simple_repeat Simple_repeat 1 47 0 392 329 117 49 chrX 4028033 4029030 -158570900 + L1 LINE L1 4128 5204 -942 1466 185 78 37 chrX 4029471 4029854 -158570076 - LTR2B LTR ERV1 -58 432 34 950 119 34 17 chrX 4029933 4030110 -158569820 + AluSq SINE Alu 5 184 -129 2376 52 17 3 chrX 4080385 4080675 -158519255 - AluY SINE Alu -17 294 1 32 43 0 0 chrX 4081276 4081322 -158518608 + AT_rich Low_complexity Low_complexity 1 46 0 2202 96 24 0 chrX 4081968 4082094 -158517836 + AluSx SINE Alu 1 123 -189 189 0 0 0 chrX 4082094 4082115 -158517815 + (TAA)n Simple_repeat Simple_repeat 2 22 0 2202 96 24 0 chrX 4082115 4082281 -158517649 + AluSx SINE Alu 123 300 -12 22 0 0 0 chrX 4082574 4082596 -158517334 + AT_rich Low_complexity Low_complexity 1 22 0 347 236 157 0 chrX 4082726 4082866 -158517064 - Charlie2a DNA MER1_type -1782 1080 919 21 57 0 0 chrX 4082991 4083026 -158516904 + AT_rich Low_complexity Low_complexity 1 35 0 234 0 0 0 chrX 4083435 4083461 -158516469 + (TCTA)n Simple_repeat Simple_repeat 4 29 0 22 0 0 0 chrX 4083522 4083544 -158516386 + AT_rich Low_complexity Low_complexity 1 22 0 30 59 0 0 chrX 4083708 4083759 -158516171 + AT_rich Low_complexity Low_complexity 1 51 0 28260 39 39 1 chrX 4084019 4087574 -158512356 + L1P LINE L1 3 3694 -2452 288 0 0 0 chrX 4087693 4087725 -158512205 + (TATG)n Simple_repeat Simple_repeat 1 32 0 873 105 35 0 chrX 4087725 4087896 -158512034 + (TCTA)n Simple_repeat Simple_repeat 2 178 0 189 74 0 0 chrX 4087928 4087955 -158511975 + (TC)n Simple_repeat Simple_repeat 2 28 0 427 133 0 42 chrX 4087960 4088080 -158511850 + (TCTA)n Simple_repeat Simple_repeat 3 117 0 421 293 33 13 chrX 4089443 4089593 -158510337 + MIR SINE MIR 107 259 -3 190 107 47 67 chrX 4089632 4089781 -158510149 + (TTATA)n Simple_repeat Simple_repeat 5 150 0 33 25 0 0 chrX 4090352 4090392 -158509538 + AT_rich Low_complexity Low_complexity 1 40 0 213 121 0 0 chrX 4091057 4091090 -158508840 + (T)n Simple_repeat Simple_repeat 1 33 0 465 19 0 0 chrX 4091810 4091864 -158508066 + (TG)n Simple_repeat Simple_repeat 1 54 0 1617 161 3 39 chrX 4091915 4092121 -158507809 - AluJo SINE Alu -18 294 101 2421 107 27 3 chrX 4092121 4092487 -158507443 + THE1C LTR MaLR 1 375 0 1617 161 3 39 chrX 4092487 4092585 -158507345 - AluJo SINE Alu -211 101 1 1067 70 23 12 chrX 4093088 4093259 -158506671 + (TCTA)n Simple_repeat Simple_repeat 2 174 0 720 89 16 8 chrX 4093373 4093497 -158506433 + (TCTA)n Simple_repeat Simple_repeat 2 126 0 1998 182 9 24 chrX 4093981 4094111 -158505819 + MLT2B2 LTR ERVL 1 132 -383 2373 118 14 11 chrX 4094111 4094474 -158505456 + THE1B LTR MaLR 1 364 0 1998 182 9 24 chrX 4094474 4094783 -158505147 + MLT2B2 LTR ERVL 132 481 -34 427 221 16 0 chrX 4094807 4094934 -158504996 + (TCCA)n Simple_repeat Simple_repeat 1 129 0 2069 153 32 8 chrX 4095621 4095994 -158503936 + MLT1B LTR MaLR 1 382 -8 24 0 0 0 chrX 4097015 4097039 -158502891 + AT_rich Low_complexity Low_complexity 1 24 0 21 36 0 0 chrX 4097851 4097879 -158502051 + AT_rich Low_complexity Low_complexity 1 28 0 1538 160 9 0 chrX 4097881 4098112 -158501818 - AluJo SINE Alu -75 237 5 986 182 0 23 chrX 4098626 4098802 -158501128 - AluJ SINE Alu 0 312 141 710 184 102 20 chrX 4098839 4098862 -158501068 - AluJ SINE Alu -153 159 139 189 0 0 0 chrX 4098862 4098883 -158501047 + (TTTA)n Simple_repeat Simple_repeat 2 22 0 710 184 102 20 chrX 4098883 4099006 -158500924 - AluJ SINE Alu -173 139 1 5426 45 1 0 chrX 4099419 4100080 -158499850 + L1PA5 LINE L1 5486 6147 -7 2626 116 3 0 chrX 4101467 4101829 -158498101 + THE1B LTR MaLR 1 363 -1 1422 178 21 0 chrX 4101866 4102147 -158497783 + L1PB4 LINE L1 5868 6154 -2 25 65 0 0 chrX 4102154 4102200 -158497730 + AT_rich Low_complexity Low_complexity 1 46 0 2029 123 0 7 chrX 4102363 4102663 -158497267 + AluJb SINE Alu 1 298 -14 840 157 40 0 chrX 4102791 4103063 -158496867 - L1MA5A LINE L1 -5 6292 5961 2259 113 0 0 chrX 4103063 4103373 -158496557 - AluSq SINE Alu -3 310 1 840 157 40 0 chrX 4103373 4103423 -158496507 - L1MA5A LINE L1 -336 5961 5914 2622 174 8 23 chrX 4103451 4103967 -158495963 - L1PA16 LINE L1 -2 6164 5657 2403 164 54 5 chrX 4104184 4104611 -158495319 - MER83 LTR ERV1 0 448 1 1484 186 10 10 chrX 4105154 4105450 -158494480 - AluJb SINE Alu -10 302 7 26 0 0 0 chrX 4105836 4105862 -158494068 + AT_rich Low_complexity Low_complexity 1 26 0 1655 212 51 36 chrX 4106462 4106637 -158493293 - L1MD1 LINE L1 0 6242 6071 1965 140 140 8 chrX 4106637 4107015 -158492915 - MSTA LTR MaLR 0 428 1 1655 212 51 36 chrX 4107015 4107311 -158492619 - L1MD1 LINE L1 -171 6071 5764 1816 167 3 15 chrX 4107472 4107807 -158492123 - MER47A DNA MER2_type 0 366 36 22 0 0 0 chrX 4108041 4108063 -158491867 + AT_rich Low_complexity Low_complexity 1 22 0 1520 162 49 25 chrX 4108226 4108510 -158491420 - AluJo SINE Alu -21 291 1 252 282 71 26 chrX 4108511 4108665 -158491265 - MIR SINE MIR -62 146 10 180 147 0 59 chrX 4108659 4108693 -158491237 + MER5B DNA MER1_type 78 109 -69 * 331 283 232 0 chrX 4108776 4108914 -158491016 + MER5A DNA MER1_type 13 182 -7 2038 171 16 5 chrX 4109171 4109557 -158490373 + MLT1B LTR MaLR 1 390 0 186 43 0 0 chrX 4110375 4110398 -158489532 + (TTCA)n Simple_repeat Simple_repeat 3 25 0 1443 187 60 18 chrX 4110408 4110691 -158489239 - AluJb SINE Alu -17 295 1 1413 176 87 13 chrX 4110913 4111225 -158488705 - MER44D DNA MER2_type 0 609 5 1005 148 18 0 chrX 4114418 4114587 -158485343 + AluSg/x SINE Alu 111 282 -28 28 48 0 0 chrX 4114593 4114635 -158485295 + AT_rich Low_complexity Low_complexity 1 42 0 1024 228 94 22 chrX 4114851 4115171 -158484759 + MER2 DNA MER2_type 1 343 -1 1570 147 26 23 chrX 4115743 4116049 -158483881 - MLT1B LTR MaLR -83 307 1 378 0 0 0 chrX 4116114 4116156 -158483774 + (CA)n Simple_repeat Simple_repeat 2 43 0 1808 82 4 0 chrX 4116212 4116443 -158483487 - AluSp SINE Alu -17 296 65 1356 203 41 24 chrX 4117279 4117570 -158482360 - AluJo SINE Alu -5 297 2 22 35 0 0 chrX 4117840 4117869 -158482061 + AT_rich Low_complexity Low_complexity 1 29 0 21 0 0 0 chrX 4117976 4117997 -158481933 + AT_rich Low_complexity Low_complexity 1 21 0 218 96 0 58 chrX 4118065 4118117 -158481813 + (TTATA)n Simple_repeat Simple_repeat 2 50 0 572 292 17 43 chrX 4118446 4118679 -158481251 - MLT1E2 LTR MaLR -8 618 392 1255 129 224 11 chrX 4118699 4118962 -158480968 - MER47A DNA MER2_type -28 338 20 467 281 45 41 chrX 4118962 4119229 -158480701 - MLT1E2 LTR MaLR -239 387 120 2374 263 146 37 chrX 4119267 4120525 -158479405 + L1MD1 LINE L1 210 1605 -4935 1926 210 24 118 chrX 4120626 4120992 -158478938 + L1PA16 LINE L1 5499 5767 -399 414 100 0 0 chrX 4120992 4121052 -158478878 + (TA)n Simple_repeat Simple_repeat 1 60 0 1926 210 24 118 chrX 4121052 4121395 -158478535 + L1PA16 LINE L1 5767 6141 -25 1869 220 48 41 chrX 4121404 4121865 -158478065 + L1MD1 LINE L1 5374 5830 -806 1630 193 13 10 chrX 4121865 4122165 -158477765 + AluJo SINE Alu 2 302 -10 1869 220 48 41 chrX 4122165 4122560 -158477370 + L1MD1 LINE L1 5830 6220 -416 485 171 77 0 chrX 4122560 4122677 -158477253 + L1MD1 LINE L1 6500 6625 -11 1936 164 3 0 chrX 4122858 4123163 -158476767 - AluJb SINE Alu -6 306 1 229 289 70 26 chrX 4123431 4123545 -158476385 - MIR SINE MIR -32 230 112 731 130 41 0 chrX 4124876 4125045 -158474885 + (TAGA)n Simple_repeat Simple_repeat 2 177 0 1961 178 113 10 chrX 4125084 4125501 -158474429 - MLT2B1 LTR ERVL -60 460 1 276 307 32 30 chrX 4125829 4125976 -158473954 - MIR SINE MIR -67 141 12 2173 106 3 10 chrX 4126738 4127031 -158472899 - AluSp SINE Alu -22 291 1 1781 284 62 110 chrX 4127056 4127668 -158472262 - L1MC3 LINE L1 0 7785 7246 301 246 0 0 chrX 4127668 4127737 -158472193 + L1MA2 LINE L1 6227 6295 -9 1781 284 62 110 chrX 4127737 4128213 -158471717 - L1MC3 LINE L1 -539 7246 6749 472 163 38 22 chrX 4128476 4128790 -158471140 + (TCTA)n Simple_repeat Simple_repeat 1 319 0 333 323 84 21 chrX 4129064 4129349 -158470581 - L1M4 LINE L1 -2461 3685 3383 23 0 0 0 chrX 4129378 4129401 -158470529 + AT_rich Low_complexity Low_complexity 1 23 0 197 132 26 0 chrX 4129468 4129506 -158470424 + CT-rich Low_complexity Low_complexity 2 40 0 303 28 0 0 chrX 4130292 4130328 -158469602 + (CA)n Simple_repeat Simple_repeat 2 37 0 * 366 23 0 0 chrX 4130327 4130370 -158469560 + (TC)n Simple_repeat Simple_repeat 1 43 0 304 197 7 148 chrX 4130538 4130680 -158469250 + Tigger3(Golem) DNA MER2_type 1 122 -2907 * 1677 126 90 44 chrX 4130666 4130791 -158469139 + Tigger3(Golem) DNA MER2_type 2285 2403 -626 1707 195 3 3 chrX 4130791 4131118 -158468812 + AluJo SINE Alu 1 312 0 1677 126 90 44 chrX 4131118 4131381 -158468549 + Tigger3(Golem) DNA MER2_type 2403 2691 -338 360 188 0 0 chrX 4131605 4131685 -158468245 + L1MEc LINE L1 2177 2256 -4140 497 308 44 56 chrX 4131720 4132058 -158467872 + L1MEc LINE L1 2255 2588 -3627 640 212 9 0 chrX 4132072 4132301 -158467629 + GA-rich Low_complexity Low_complexity 1 231 0 587 219 20 9 chrX 4132333 4132685 -158467245 + GA-rich Low_complexity Low_complexity 1 356 0 2362 166 2 5 chrX 4133628 4134039 -158465891 + MER66B LTR ERV1 1 410 -76 431 298 31 31 chrX 4134621 4134782 -158465148 - MER5A DNA MER1_type -27 162 2 1873 147 3 13 chrX 4134896 4135209 -158464721 + AluSx SINE Alu 1 310 -2 3018 190 11 54 chrX 4135331 4135551 -158464379 + LTR51 LTR ERV1 1 229 -442 2125 116 0 3 chrX 4135551 4135869 -158464061 - AluSx SINE Alu 0 317 1 3018 190 11 54 chrX 4135869 4136347 -158463583 + LTR51 LTR ERV1 229 670 -1 2516 56 0 3 chrX 4136548 4136852 -158463078 + AluY SINE Alu 3 305 -6 2401 195 27 63 chrX 4136934 4137569 -158462361 - LTR9 LTR ERV1 0 612 1 1937 232 24 13 chrX 4137744 4138206 -158461724 + LTR24 LTR ERV1 1 467 0 1884 149 3 29 chrX 4138225 4138534 -158461396 - AluJo SINE Alu -11 301 1 2054 125 76 15 chrX 4138827 4139170 -158460760 + THE1B LTR MaLR 1 364 0 230 136 45 45 chrX 4139648 4139714 -158460216 + L1MA9 LINE L1 6239 6304 -8 1619 110 195 23 chrX 4140832 4141140 -158458790 - MER4A LTR ERV1 -43 621 261 485 155 21 10 chrX 4141140 4141237 -158458693 - MER4A LTR ERV1 -566 98 1 233 308 33 11 chrX 4142186 4142277 -158457653 + MIR SINE MIR 35 127 -135 1905 129 42 58 chrX 4142630 4143011 -158456919 - THE1C LTR MaLR 0 375 1 781 219 26 53 chrX 4143178 4143780 -158456150 + MER4C LTR ERV1 1 693 -6 208 299 103 10 chrX 4145201 4145298 -158454632 - MER5A DNA MER1_type -77 112 7 440 304 131 6 chrX 4145312 4145480 -158454450 - MER5A DNA MER1_type 0 189 1 199 316 127 0 chrX 4145496 4145575 -158454355 - MER5B DNA MER1_type 0 178 90 2267 186 20 40 chrX 4145578 4146133 -158453797 - L1PA16 LINE L1 -2 6164 5621 3672 205 27 64 chrX 4146248 4147292 -158452638 - L1PA16 LINE L1 -784 5362 4358 195 333 0 0 chrX 4147308 4147371 -158452559 + MER5B DNA MER1_type 115 177 -1 493 219 5 10 chrX 4147944 4148146 -158451784 + CT-rich Low_complexity Low_complexity 1 200 0 824 185 0 6 chrX 4148159 4148332 -158451598 + CT-rich Low_complexity Low_complexity 3 174 0 221 284 86 12 chrX 4148336 4148417 -158451513 + MIR SINE MIR 108 194 -68 543 185 21 35 chrX 4149782 4150109 -158449821 + CT-rich Low_complexity Low_complexity 1 322 0 251 219 21 31 chrX 4150251 4150347 -158449583 + (TAGA)n Simple_repeat Simple_repeat 3 97 0 286 141 13 26 chrX 4150603 4150646 -158449284 + (TAGA)n Simple_repeat Simple_repeat 1 44 -33 2217 72 27 14 chrX 4150646 4150938 -158448992 + AluSx SINE Alu 11 306 -6 286 141 13 26 chrX 4150938 4150972 -158448958 + (TAGA)n Simple_repeat Simple_repeat 44 77 0 8727 27 2 1 chrX 4151476 4153292 -158446638 - L1PA2 LINE L1 -5 6150 4335 639 160 25 15 chrX 4153424 4153590 -158446340 + CT-rich Low_complexity Low_complexity 1 196 -32 201 39 0 0 chrX 4153590 4153616 -158446314 + (TTG)n Simple_repeat Simple_repeat 2 27 0 639 160 25 15 chrX 4153616 4153650 -158446280 + CT-rich Low_complexity Low_complexity 196 228 0 349 123 0 18 chrX 4154959 4155012 -158444918 - AluJo SINE Alu -12 290 239 1459 219 156 72 chrX 4155012 4155212 -158444718 + LTR1 LTR ERV1 1 183 -602 246 62 0 0 chrX 4155212 4155244 -158444686 + (CA)n Simple_repeat Simple_repeat 1 32 0 1459 219 156 72 chrX 4155244 4155766 -158444164 + LTR1 LTR ERV1 183 784 -1 1388 163 0 48 chrX 4155766 4156017 -158443913 - AluJo SINE Alu -70 242 4 531 227 25 81 chrX 4156162 4156361 -158443569 + MER106B DNA MER1_type 1 210 -849 1504 184 12 70 chrX 4156361 4156692 -158443238 + AluJb SINE Alu 1 312 0 531 227 25 81 chrX 4156692 4156721 -158443209 + MER106B DNA MER1_type 210 1043 -16 195 204 0 0 chrX 4157043 4157092 -158442838 + (TA)n Simple_repeat Simple_repeat 1 49 0 2750 164 15 33 chrX 4157227 4157768 -158442162 + LTR26B LTR ERV1 1 531 0 257 320 20 0 chrX 4158745 4158845 -158441085 + MLT1J LTR MaLR 80 181 -330 1828 208 65 114 chrX 4159265 4159638 -158440292 + LTR8A LTR ERV1 1 320 -407 2431 118 5 18 chrX 4159638 4160018 -158439912 + THE1C LTR MaLR 1 375 0 1828 208 65 114 chrX 4160018 4160407 -158439523 + LTR8A LTR ERV1 320 726 -1 324 270 10 0 chrX 4160546 4160646 -158439284 + MLT1I LTR MaLR 309 409 0 432 277 32 26 chrX 4160795 4160950 -158438980 - LTR16A1 LTR ERVL -4 453 298 315 0 0 0 chrX 4162271 4162306 -158437624 + (TG)n Simple_repeat Simple_repeat 2 36 0 24 32 0 0 chrX 4162536 4162567 -158437363 + AT_rich Low_complexity Low_complexity 1 31 0 286 247 37 0 chrX 4163122 4163203 -158436727 + (TA)n Simple_repeat Simple_repeat 2 85 0 31 44 0 0 chrX 4163215 4163260 -158436670 + AT_rich Low_complexity Low_complexity 1 45 0 281 161 0 0 chrX 4163263 4163319 -158436611 - L1PB4 LINE L1 -1 6155 6100 186 236 0 0 chrX 4163324 4163379 -158436551 + (TATATG)n Simple_repeat Simple_repeat 6 60 0 34 55 0 0 chrX 4163548 4163603 -158436327 + AT_rich Low_complexity Low_complexity 1 55 0 494 237 119 0 chrX 4163607 4163725 -158436205 - FLAM_A SINE Alu -1 132 1 920 164 0 7 chrX 4164455 4164607 -158435323 + FRAM SINE Alu 2 152 -14 899 293 86 112 chrX 4164763 4165430 -158434500 + L2 LINE L2 1839 2522 -791 3150 146 10 2 chrX 4165430 4165922 -158434008 + LOR1a LTR ERV1 1 496 -1 899 293 86 112 chrX 4165922 4166071 -158433859 + L2 LINE L2 2522 2673 -640 1982 129 0 14 chrX 4166071 4166401 -158433529 - AluSx SINE Alu 0 326 1 899 293 86 112 chrX 4166401 4167117 -158432813 + L2 LINE L2 2673 3307 -6 2376 82 0 19 chrX 4167721 4168036 -158431894 + AluY SINE Alu 3 311 0 213 65 0 0 chrX 4168089 4168120 -158431810 + (A)n Simple_repeat Simple_repeat 1 31 0 353 284 34 28 chrX 4168122 4168298 -158431632 + L1MC/D LINE L1 5272 5448 -2360 257 291 25 23 chrX 4168534 4168696 -158431234 + L1MC/D LINE L1 5665 5825 -312 180 0 0 0 chrX 4168723 4168743 -158431187 + (TA)n Simple_repeat Simple_repeat 2 21 0 493 311 58 5 chrX 4168743 4168933 -158430997 - MIR SINE MIR -35 227 28 207 0 0 0 chrX 4168971 4168994 -158430936 + (CATATA)n Simple_repeat Simple_repeat 5 27 0 793 159 0 15 chrX 4169009 4169141 -158430789 + FLAM_C SINE Alu 2 131 -2 268 230 10 10 chrX 4169186 4169286 -158430644 + (TA)n Simple_repeat Simple_repeat 1 100 0 447 98 0 130 chrX 4169289 4169381 -158430549 + MADE1 DNA Mariner 1 80 0 30 69 0 0 chrX 4169672 4169730 -158430200 + AT_rich Low_complexity Low_complexity 1 58 0 2285 76 6 31 chrX 4169889 4170206 -158429724 + AluY SINE Alu 1 309 -2 26 0 0 0 chrX 4170206 4170232 -158429698 + AT_rich Low_complexity Low_complexity 1 26 0 244 286 128 23 chrX 4171264 4171397 -158428533 - MIR SINE MIR -42 220 74 1566 151 16 87 chrX 4172601 4172913 -158427017 - AluJo SINE Alu -21 291 2 1055 286 68 52 chrX 4173770 4174578 -158425352 - L1ME3A LINE L1 -94 6076 5255 281 304 99 10 chrX 4174638 4174708 -158425222 - L1ME3A LINE L1 -925 5221 5159 2200 127 30 28 chrX 4174708 4175071 -158424859 + THE1B LTR MaLR 1 364 0 281 304 99 10 chrX 4175071 4175201 -158424729 - L1ME3A LINE L1 -987 5159 5003 244 293 166 13 chrX 4175518 4175675 -158424255 - L1ME3A LINE L1 -2272 3874 3694 * 271 272 128 11 chrX 4175668 4175848 -158424082 - L1M4 LINE L1 -1538 4608 4408 353 270 0 0 chrX 4176191 4176265 -158423665 - MER5A DNA MER1_type -99 90 17 1658 197 0 7 chrX 4176748 4177043 -158422887 + AluJo SINE Alu 3 295 -17 1616 193 0 41 chrX 4177106 4177422 -158422508 - AluJb SINE Alu -8 304 2 883 154 83 12 chrX 4180072 4180241 -158419689 + MER20 DNA MER1_type 34 214 -5 21 36 0 0 chrX 4180750 4180778 -158419152 + AT_rich Low_complexity Low_complexity 1 28 0 2441 153 28 19 chrX 4180779 4181209 -158418721 + Tigger2a DNA MER2_type 1 434 0 1945 155 0 0 chrX 4181235 4181542 -158418388 + AluSx SINE Alu 1 307 0 1448 121 56 0 chrX 4181777 4182026 -158417904 - L1MA4 LINE L1 0 6300 6038 380 341 59 36 chrX 4182869 4183227 -158416703 + L1M4 LINE L1 2480 2845 -3301 1802 149 36 0 chrX 4183255 4183557 -158416373 + AluSq SINE Alu 1 313 0 383 123 0 27 chrX 4183563 4183636 -158416294 + (GAAA)n Simple_repeat Simple_repeat 4 74 0 250 171 24 49 chrX 4183756 4183838 -158416092 + (TCTA)n Simple_repeat Simple_repeat 2 81 0 2650 182 34 61 chrX 4183998 4184985 -158414945 + L1MA10 LINE L1 4626 5607 -561 662 147 0 18 chrX 4184985 4185094 -158414836 + FLAM_C SINE Alu 14 120 -23 330 87 0 0 chrX 4185095 4185141 -158414789 + (TA)n Simple_repeat Simple_repeat 1 46 0 3314 178 36 23 chrX 4185145 4185876 -158414054 + L1MA10 LINE L1 5594 6333 -1 410 158 40 0 chrX 4186464 4186540 -158413390 + MADE1 DNA Mariner 2 80 0 24 0 0 0 chrX 4186978 4187002 -158412928 + AT_rich Low_complexity Low_complexity 1 24 0 1341 185 14 42 chrX 4187370 4187538 -158412392 + AluJb SINE Alu 1 159 -153 2048 139 232 34 chrX 4187538 4187978 -158411952 - MER1A DNA MER1_type 0 527 1 1341 185 14 42 chrX 4187978 4188096 -158411834 + AluJb SINE Alu 159 279 -33 213 65 0 0 chrX 4188096 4188127 -158411803 + (CAAAA)n Simple_repeat Simple_repeat 2 32 0 266 159 48 28 chrX 4188500 4188645 -158411285 + (TCTA)n Simple_repeat Simple_repeat 2 149 0 23 0 0 0 chrX 4188803 4188826 -158411104 + AT_rich Low_complexity Low_complexity 1 23 0 25 31 0 0 chrX 4189448 4189480 -158410450 + AT_rich Low_complexity Low_complexity 1 32 0 31 44 0 0 chrX 4189514 4189559 -158410371 + AT_rich Low_complexity Low_complexity 1 45 0 2408 274 102 35 chrX 4190347 4192304 -158407626 + L1MEc LINE L1 638 2686 -3529 561 192 20 20 chrX 4192362 4192508 -158407422 - L1MA10 LINE L1 -7 6327 6182 207 114 0 0 chrX 4192947 4192982 -158406948 + (CA)n Simple_repeat Simple_repeat 2 36 0 1062 171 0 6 chrX 4194350 4194531 -158405399 - AluJb SINE Alu -16 296 117 1641 143 68 8 chrX 4194531 4194797 -158405133 - AluJo SINE Alu -30 282 1 2687 162 83 2 chrX 4195046 4195552 -158404378 + MER44D DNA MER2_type 2 603 -2 4104 100 14 88 chrX 4195575 4196292 -158403638 + MER4A LTR ERV1 1 664 0 932 191 0 0 chrX 4197045 4197207 -158402723 - AluJb SINE Alu -4 308 147 182 105 26 0 chrX 4197469 4197507 -158402423 + T-rich Low_complexity Low_complexity 3 41 0 405 127 14 0 chrX 4197586 4197657 -158402273 - AluS SINE Alu -237 72 1 1890 161 6 19 chrX 4199919 4200235 -158399695 + AluJo SINE Alu 1 312 0 1867 170 120 0 chrX 4201169 4201551 -158398379 - MSTA LTR MaLR 0 428 1 10749 132 16 14 chrX 4201589 4202325 -158397605 - L1PA13 LINE L1 -281 5882 5148 2486 125 5 8 chrX 4202325 4202701 -158397229 + THE1C LTR MaLR 1 375 0 10749 132 16 14 chrX 4202701 4203575 -158396355 - L1PA13 LINE L1 -1015 5148 4269 978 93 0 7 chrX 4203575 4203715 -158396215 - MER85 DNA T2_type 0 139 1 10749 132 16 14 chrX 4203715 4204512 -158395418 - L1PA13 LINE L1 -1894 4269 3475 202 386 26 26 chrX 4204733 4204961 -158394969 - L2 LINE L2 -1357 1957 1730 198 0 0 0 chrX 4205061 4205083 -158394847 + (TTTTTG)n Simple_repeat Simple_repeat 3 24 0 1663 184 36 16 chrX 4206239 4206544 -158393386 + AluSx SINE Alu 2 312 0 2555 242 26 29 chrX 4206942 4207296 -158392634 - MER76 LTR ERV -29 659 306 1793 145 60 33 chrX 4207296 4207661 -158392269 - THE1C LTR MaLR 0 375 1 2555 242 26 29 chrX 4207661 4207967 -158391963 - MER76 LTR ERV -382 306 1 1434 204 3 22 chrX 4208004 4208317 -158391613 + AluJo SINE Alu 1 307 -5 4915 143 35 21 chrX 4208900 4209890 -158390040 + L1PA15 LINE L1 5163 6164 -1 298 201 15 67 chrX 4210294 4210428 -158389502 + (CATATA)n Simple_repeat Simple_repeat 4 130 0 1804 132 3 10 chrX 4210428 4210723 -158389207 + L1PA16 LINE L1 5715 6007 -159 225 224 52 0 chrX 4210722 4210780 -158389150 + L1MD3 LINE L1 6615 6675 -1320 * 1628 143 4 0 chrX 4211637 4211875 -158388055 + AluSx SINE Alu 1 239 -73 189 0 0 0 chrX 4211885 4211906 -158388024 + (CAAA)n Simple_repeat Simple_repeat 4 24 0 530 100 40 0 chrX 4214298 4214398 -158385532 + GA-rich Low_complexity Low_complexity 1 104 0 189 328 28 79 chrX 4214398 4214575 -158385355 - L3 LINE CR1 -25 1552 1385 22 0 0 0 chrX 4214639 4214661 -158385269 + AT_rich Low_complexity Low_complexity 1 22 0 29 60 0 0 chrX 4214887 4214937 -158384993 + AT_rich Low_complexity Low_complexity 1 50 0 186 351 70 54 chrX 4215126 4215385 -158384545 - L3 LINE CR1 -828 749 487 252 0 0 0 chrX 4215665 4215693 -158384237 + (TTTTTA)n Simple_repeat Simple_repeat 2 29 0 21 0 0 0 chrX 4216611 4216632 -158383298 + AT_rich Low_complexity Low_complexity 1 21 0 296 316 129 19 chrX 4217616 4217825 -158382105 + L2 LINE L2 1238 1469 -1845 1431 244 37 55 chrX 4217825 4218333 -158381597 - MLT1D LTR MaLR 0 505 7 22 35 0 0 chrX 4219576 4219605 -158380325 + AT_rich Low_complexity Low_complexity 1 29 0 206 264 57 0 chrX 4220376 4220429 -158379501 + MIR SINE MIR 117 172 -90 1688 199 0 0 chrX 4220877 4221164 -158378766 + AluJo SINE Alu 2 288 -24 848 254 55 47 chrX 4221579 4221785 -158378145 - MLT1E LTR MaLR -2 591 381 2775 178 154 13 chrX 4221785 4222420 -158377510 - LTR8A LTR ERV1 -2 725 1 848 254 55 47 chrX 4222420 4222469 -158377461 - MLT1E LTR MaLR -212 381 334 379 329 22 0 chrX 4222530 4222667 -158377263 - MLT1E LTR MaLR -381 212 73 3030 262 103 55 chrX 4222683 4224438 -158375492 + L1MEc LINE L1 2179 4010 -2205 2284 108 0 6 chrX 4224438 4224752 -158375178 + AluSq SINE Alu 1 312 -1 3030 262 103 55 chrX 4224752 4225072 -158374858 + L1MEc LINE L1 4010 4313 -1902 2147 164 47 29 chrX 4225073 4225612 -158374318 + MLT2A2 LTR ERVL 1 554 0 1279 256 116 58 chrX 4225613 4226595 -158373335 + L1MEc LINE L1 4356 5394 -821 * 6053 126 11 14 chrX 4226587 4227518 -158372412 + THE1C-int LTR MaLR 653 1580 0 1823 169 38 22 chrX 4227518 4227884 -158372046 + THE1C LTR MaLR 1 372 -3 255 61 0 0 chrX 4227884 4227917 -158372013 + (CA)n Simple_repeat Simple_repeat 2 34 0 222 267 78 22 chrX 4227917 4228007 -158371923 - MIR SINE MIR -58 204 110 1495 90 4 37 chrX 4228031 4228275 -158371655 - L1MA8 LINE L1 -4 6287 6052 2536 107 3 8 chrX 4228335 4228701 -158371229 - THE1B LTR MaLR 0 364 1 780 184 0 25 chrX 4229532 4229818 -158370112 + GA-rich Low_complexity Low_complexity 1 278 0 629 204 6 17 chrX 4229829 4230010 -158369920 + GA-rich Low_complexity Low_complexity 2 180 0 534 126 32 11 chrX 4230797 4230892 -158369038 + MER4A LTR ERV1 2 98 -566 1628 131 14 78 chrX 4230892 4231259 -158368671 + MER4A LTR ERV1 261 662 -2 2455 62 0 0 chrX 4231532 4231849 -158368081 + AluY SINE Alu 1 317 0 2267 103 3 0 chrX 4232921 4233221 -158366709 - AluSx SINE Alu -11 301 1 3877 158 12 12 chrX 4235556 4236261 -158363669 - MER51C LTR ERV1 -17 623 1 200 225 0 0 chrX 4236572 4236612 -158363318 + MIR SINE MIR 2 41 -221 807 113 0 24 chrX 4236832 4236956 -158362974 + MER4A LTR ERV1 544 664 0 216 217 57 19 chrX 4237212 4237318 -158362612 + (TA)n Simple_repeat Simple_repeat 1 110 0 530 313 106 26 chrX 4237318 4237705 -158362225 - L1MC4a LINE L1 -1880 5928 5511 1703 176 3 23 chrX 4237800 4238102 -158361828 + AluJb SINE Alu 1 296 -16 284 165 39 0 chrX 4238138 4238191 -158361739 + (TA)n Simple_repeat Simple_repeat 1 50 -57 1924 130 55 22 chrX 4238191 4238552 -158361378 + THE1C LTR MaLR 1 373 -2 284 165 39 0 chrX 4238552 4238601 -158361329 + (TA)n Simple_repeat Simple_repeat 50 107 0 1089 211 32 7 chrX 4238929 4239214 -158360716 - MER33 DNA MER1_type -1 323 32 21 0 0 0 chrX 4239821 4239842 -158360088 + AT_rich Low_complexity Low_complexity 1 21 0 22 70 0 0 chrX 4240782 4240825 -158359105 + AT_rich Low_complexity Low_complexity 1 43 0 194 62 31 0 chrX 4241600 4241632 -158358298 + (TC)n Simple_repeat Simple_repeat 2 34 0 296 245 50 58 chrX 4242282 4242383 -158357547 - MIR SINE MIR -4 258 157 1612 147 125 9 chrX 4242383 4242710 -158357220 + MLT1A1 LTR MaLR 1 365 0 296 245 50 58 chrX 4242710 4242747 -158357183 - MIR SINE MIR -105 157 121 713 184 101 0 chrX 4242961 4243119 -158356811 - L1MA5A LINE L1 -1 6296 6123 887 189 5 16 chrX 4243220 4243410 -158356520 + AluJo SINE Alu 119 306 -6 975 231 72 20 chrX 4243458 4243887 -158356043 + MLT1D LTR MaLR 3 467 0 2258 114 0 0 chrX 4244052 4244359 -158355571 - AluSx SINE Alu -5 307 1 770 269 159 48 chrX 4244533 4244730 -158355200 - L1MD2 LINE L1 -12 6347 6173 201 39 0 0 chrX 4244730 4244756 -158355174 + (TG)n Simple_repeat Simple_repeat 2 27 0 180 0 0 0 chrX 4244757 4244777 -158355153 + (GA)n Simple_repeat Simple_repeat 2 21 0 770 269 159 48 chrX 4244777 4244949 -158354981 - L1MD2 LINE L1 -185 6174 5935 * 939 109 7 7 chrX 4244941 4245088 -158354842 + L1MA5A LINE L1 5828 5974 -323 1475 194 14 7 chrX 4245317 4245596 -158354334 + AluJo SINE Alu 1 281 -31 2806 16 0 0 chrX 4246003 4246314 -158353616 + AluYa5 SINE Alu 1 311 0 23 0 0 0 chrX 4246314 4246337 -158353593 + AT_rich Low_complexity Low_complexity 1 23 0 222 37 0 0 chrX 4246433 4246460 -158353470 + (CA)n Simple_repeat Simple_repeat 2 28 0 310 307 206 31 chrX 4246622 4247068 -158352862 + L2 LINE L2 2446 2969 -345 201 171 24 0 chrX 4247719 4247760 -158352170 + C-rich Low_complexity Low_complexity 2 43 0 359 323 48 42 chrX 4247788 4247977 -158351953 + L2 LINE L2 3123 3312 -1 2006 205 93 58 chrX 4248022 4248759 -158351171 - LTR1B LTR ERV1 0 785 29 2211 158 8 74 chrX 4248870 4249369 -158350561 - LOR1a LTR ERV1 0 497 32 1454 103 0 0 chrX 4250007 4250192 -158349738 + AluSx SINE Alu 1 185 -127 1456 170 7 0 chrX 4250192 4250469 -158349461 + L1MA4 LINE L1 5320 5598 -702 1189 150 0 12 chrX 4250473 4250646 -158349284 + FRAM SINE Alu 1 164 -12 2210 144 17 10 chrX 4250646 4251048 -158348882 + L1MA4 LINE L1 5606 6010 -290 1001 129 13 7 chrX 4251152 4251307 -158348623 - AluJo SINE Alu -76 236 81 2670 125 7 7 chrX 4251307 4251716 -158348214 + LTR9B LTR ERV1 236 644 0 2240 154 64 15 chrX 4251971 4252437 -158347493 + L1MB3 LINE L1 5659 6147 -36 2099 150 49 29 chrX 4252438 4252964 -158346966 - MLT2A2 LTR ERVL 0 554 1 4199 143 33 1 chrX 4253383 4254084 -158345846 - LTR39 LTR ERV1 -60 723 1 250 294 110 46 chrX 4254801 4254910 -158345020 - MER5A DNA MER1_type -53 136 21 821 181 6 0 chrX 4255123 4255300 -158344630 + (TCTA)n Simple_repeat Simple_repeat 3 180 0 297 130 0 0 chrX 4255300 4255346 -158344584 + (TCCA)n Simple_repeat Simple_repeat 1 46 0 1016 128 6 0 chrX 4255346 4255426 -158344504 + (TCCA)n Simple_repeat Simple_repeat 1 260 0 1016 128 6 0 chrX 4255426 4255605 -158344325 + (TCCA)n Simple_repeat Simple_repeat 1 180 0 228 231 0 0 chrX 4255703 4255755 -158344175 + (TCCA)n Simple_repeat Simple_repeat 3 54 0 538 141 207 71 chrX 4256457 4256706 -158343224 - MER4C LTR ERV1 -20 445 169 1042 124 54 158 chrX 4256711 4257097 -158342833 - MER4A LTR ERV1 -318 346 1 2660 172 103 48 chrX 4258148 4258835 -158341095 - LTR8A LTR ERV1 0 727 3 345 364 0 0 chrX 4258866 4258995 -158340935 - MIR SINE MIR -6 256 128 540 317 6 0 chrX 4259022 4259186 -158340744 + MLT2F LTR ERVL 432 596 -67 21 36 0 0 chrX 4259431 4259459 -158340471 + AT_rich Low_complexity Low_complexity 1 28 0 3931 123 8 9 chrX 4259591 4259772 -158340158 - MER41B LTR ERV1 0 635 455 1756 157 29 32 chrX 4259772 4260116 -158339814 + MER61A LTR ERV1 1 343 0 3931 123 8 9 chrX 4260116 4260570 -158339360 - MER41B LTR ERV1 -180 455 1 2016 122 0 33 chrX 4261195 4261498 -158338432 + AluSx SINE Alu 14 306 -6 2455 68 0 13 chrX 4262971 4263282 -158336648 + AluY SINE Alu 1 307 -4 186 103 0 0 chrX 4263337 4263366 -158336564 + (TG)n Simple_repeat Simple_repeat 2 30 0 1999 187 6 3 chrX 4263373 4263737 -158336193 + MLT1A1 LTR MaLR 1 365 0 233 300 157 33 chrX 4263979 4264189 -158335741 - L2 LINE L2 -597 2717 2482 317 205 0 13 chrX 4264258 4264336 -158335594 - LTR52 LTR ERVL -340 81 5 2439 231 20 38 chrX 4264728 4265038 -158334892 + MER82 DNA MER2_type 1 315 -338 2380 165 68 4 chrX 4265038 4265505 -158334425 + LOR1a LTR ERV1 1 497 0 2439 231 20 38 chrX 4265505 4265857 -158334073 + MER82 DNA MER2_type 315 651 -2 3968 156 13 11 chrX 4266814 4267524 -158332406 - MER50 LTR ERV1 -23 711 1 2676 175 42 43 chrX 4267816 4268166 -158331764 + MER4D LTR ERV1 1 351 -552 258 32 0 0 chrX 4268166 4268197 -158331733 + (TG)n Simple_repeat Simple_repeat 1 31 0 2676 175 42 43 chrX 4268197 4268512 -158331418 + MER4D LTR ERV1 351 665 -238 1902 70 4 15 chrX 4268512 4268785 -158331145 + MER41A LTR ERV1 1 270 -284 254 190 35 0 chrX 4268785 4268843 -158331087 + LTR1B LTR ERV1 767 826 0 * 3532 169 1 29 chrX 4268843 4269121 -158330809 + LTR39 LTR ERV1 152 436 -347 1817 144 0 27 chrX 4269121 4269464 -158330466 - AluSx SINE Alu 0 335 1 3532 169 1 29 chrX 4269464 4269834 -158330096 + LTR39 LTR ERV1 436 783 0 575 255 185 8 chrX 4271588 4271847 -158328083 - MLT1F LTR MaLR 0 542 238 35 126 0 0 chrX 4271910 4272204 -158327726 + AT_rich Low_complexity Low_complexity 1 294 0 219 242 19 32 chrX 4272379 4272536 -158327394 + (TTAAA)n Simple_repeat Simple_repeat 5 159 0 43 115 0 0 chrX 4272542 4272760 -158327170 + AT_rich Low_complexity Low_complexity 1 218 0 302 266 16 38 chrX 4272831 4273015 -158326915 + (TA)n Simple_repeat Simple_repeat 1 180 0 544 186 90 42 chrX 4273015 4273096 -158326834 - L1MB4 LINE L1 -28 6152 6076 2227 161 29 0 chrX 4273096 4273475 -158326455 + MLT1B LTR MaLR 1 390 0 544 186 90 42 chrX 4273475 4273560 -158326370 - L1MB4 LINE L1 -104 6076 5978 1909 104 156 9 chrX 4273790 4274116 -158325814 - THE1C LTR MaLR -1 374 1 376 182 0 107 chrX 4274436 4274491 -158325439 - L1MB4 LINE L1 -202 5978 5941 1738 175 3 17 chrX 4274491 4274782 -158325148 - AluJo SINE Alu -25 287 1 376 182 0 107 chrX 4274782 4274847 -158325083 - L1MB4 LINE L1 -239 5941 5871 424 331 0 18 chrX 4274852 4275018 -158324912 - MLT1F LTR MaLR -378 164 2 198 150 0 0 chrX 4275057 4275097 -158324833 + (CCTA)n Simple_repeat Simple_repeat 3 42 0 2059 122 64 103 chrX 4275184 4275650 -158324280 - LTR47A LTR ERVL 0 452 5 288 312 185 0 chrX 4276338 4276527 -158323403 + L2 LINE L2 2259 2482 -832 545 129 11 0 chrX 4276722 4276815 -158323115 + G-rich Low_complexity Low_complexity 5 98 0 1568 193 3 20 chrX 4276982 4277288 -158322642 + AluJo SINE Alu 1 301 -11 46 45 0 0 chrX 4278359 4278426 -158321504 + AT_rich Low_complexity Low_complexity 1 67 0 1162 123 10 5 chrX 4278571 4278766 -158321164 + L1MA4A LINE L1 6102 6297 -6 497 238 31 21 chrX 4279035 4279228 -158320702 - L1MD3 LINE L1 0 7995 7801 186 350 15 58 chrX 4279336 4279473 -158320457 - MIR SINE MIR -131 131 1 1101 63 0 0 chrX 4280468 4280650 -158319280 + L1PA10 LINE L1 6006 6187 0 342 77 39 0 chrX 4280729 4280781 -158319149 + MLT2A2 LTR ERVL 400 453 0 21 0 0 0 chrX 4281260 4281281 -158318649 + AT_rich Low_complexity Low_complexity 1 21 0 369 0 0 0 chrX 4281396 4281437 -158318493 + (TA)n Simple_repeat Simple_repeat 2 42 0 1679 174 7 26 chrX 4282125 4282435 -158317495 + AluJo SINE Alu 2 305 -7 234 0 0 0 chrX 4282658 4282684 -158317246 + (TTG)n Simple_repeat Simple_repeat 2 27 0 208 231 0 0 chrX 4283656 4283695 -158316235 + polypurine Low_complexity Low_complexity 2 40 0 483 194 14 14 chrX 4283700 4283839 -158316091 + GA-rich Low_complexity Low_complexity 3 141 0 553 141 0 63 chrX 4283852 4284043 -158315887 + (GGAA)n Simple_repeat Simple_repeat 2 180 0 211 253 30 0 chrX 4284065 4284164 -158315766 + GA-rich Low_complexity Low_complexity 4 105 0 * 314 115 16 0 chrX 4284154 4284215 -158315715 + (GGAGA)n Simple_repeat Simple_repeat 4 65 0 441 0 0 0 chrX 4284531 4284580 -158315350 + (TTTTA)n Simple_repeat Simple_repeat 4 52 0 328 309 0 0 chrX 4284616 4284710 -158315220 - MIR SINE MIR -8 254 161 208 191 61 41 chrX 4284710 4284857 -158315073 + (TTATG)n Simple_repeat Simple_repeat 5 154 0 1572 195 76 24 chrX 4284880 4285249 -158314681 + MLT1B LTR MaLR 3 390 0 343 333 5 22 chrX 4285294 4285419 -158314511 - MIR SINE MIR -66 142 21 2060 132 19 29 chrX 4285864 4286243 -158313687 + THE1C LTR MaLR 1 375 0 2922 187 10 84 chrX 4286664 4287056 -158312874 - L1MA7 LINE L1 -9 6282 5979 1954 160 0 3 chrX 4287056 4287368 -158312562 - AluJo SINE Alu -1 311 1 2922 187 10 84 chrX 4287368 4287781 -158312149 - L1MA7 LINE L1 -312 5979 5537 213 108 0 0 chrX 4287784 4287821 -158312109 + (CCA)n Simple_repeat Simple_repeat 1 37 0 758 164 0 0 chrX 4288637 4288759 -158311171 + AluJb SINE Alu 4 125 -187 717 163 12 6 chrX 4289392 4289552 -158310378 + GA-rich Low_complexity Low_complexity 4 164 0 226 277 15 0 chrX 4289579 4289644 -158310286 + (TA)n Simple_repeat Simple_repeat 1 66 0 454 111 14 0 chrX 4289776 4289848 -158310082 - MADE1 DNA Mariner -5 75 3 232 120 40 0 chrX 4289880 4289930 -158310000 + (TA)n Simple_repeat Simple_repeat 2 53 0 577 208 100 0 chrX 4291037 4291157 -158308773 - FLAM_A SINE Alu 0 133 2 2051 123 0 3 chrX 4291995 4292308 -158307622 + AluSx SINE Alu 1 312 0 3778 104 15 74 chrX 4292308 4292877 -158307053 + L1PA13 LINE L1 5524 6048 -115 2563 40 0 0 chrX 4292877 4293173 -158306757 + AluY SINE Alu 1 296 -15 3778 104 15 74 chrX 4293173 4293278 -158306652 + L1PA13 LINE L1 6048 6158 -5 231 245 55 32 chrX 4293534 4293680 -158306250 + MLT1J2 LTR MaLR 64 251 -260 313 253 11 22 chrX 4294962 4295053 -158304877 - L1MC4 LINE L1 -1339 6703 6614 415 191 0 35 chrX 4295115 4295230 -158304700 + (CATATA)n Simple_repeat Simple_repeat 2 112 0 180 176 0 0 chrX 4295258 4295292 -158304638 + (TATATG)n Simple_repeat Simple_repeat 2 35 0 231 265 102 48 chrX 4295874 4296040 -158303890 + HAL1 LINE L1 5 179 -2328 376 205 33 33 chrX 4296281 4296403 -158303527 - L1MA4A LINE L1 -181 6122 6001 360 321 131 30 chrX 4296659 4296896 -158303034 + HAL1 LINE L1 637 897 -1610 693 285 56 3 chrX 4296944 4297228 -158302702 + Charlie1b DNA MER1_type 56 354 -169 2689 80 17 8 chrX 4297437 4297798 -158302132 - THE1B LTR MaLR 0 364 1 232 253 127 0 chrX 4297931 4298010 -158301920 + L1ME4a LINE L1 5937 6025 -96 752 160 35 7 chrX 4298693 4298837 -158301093 - Tigger3b DNA MER2_type -808 423 276 507 223 0 29 chrX 4298839 4298942 -158300988 - Tigger3b DNA MER2_type -1131 100 1 324 194 19 29 chrX 4299162 4299265 -158300665 + (TA)n Simple_repeat Simple_repeat 1 102 0 249 231 0 23 chrX 4299276 4299406 -158300524 + (TA)n Simple_repeat Simple_repeat 2 128 0 751 166 24 11 chrX 4299407 4299667 -158300263 + (TCTA)n Simple_repeat Simple_repeat 1 263 0 491 321 121 25 chrX 4300752 4301116 -158298814 + LTR16A1 LTR ERVL 49 447 -10 1782 168 0 32 chrX 4302693 4303002 -158296928 - AluJb SINE Alu -13 299 1 871 146 0 7 chrX 4303368 4303512 -158296418 + FLAM_C SINE Alu 1 143 0 40 67 0 0 chrX 4303989 4304064 -158295866 + AT_rich Low_complexity Low_complexity 1 75 0 1741 166 0 3 chrX 4305390 4305733 -158294197 - AluSx SINE Alu 0 342 1 956 120 0 0 chrX 4305733 4305866 -158294064 - AluSq/x SINE Alu -177 135 3 393 118 59 0 chrX 4306594 4306662 -158293268 + L1P5 LINE L1 5708 5779 -377 1452 186 14 25 chrX 4308313 4308598 -158291332 - AluJo SINE Alu -30 282 1 552 126 35 14 chrX 4308952 4309095 -158290835 + (TCTA)n Simple_repeat Simple_repeat 1 146 0 247 234 24 6 chrX 4309105 4309272 -158290658 + (TA)n Simple_repeat Simple_repeat 2 171 0 243 294 138 56 chrX 4309364 4309595 -158290335 - MIR SINE MIR -2 260 11 21 0 0 0 chrX 4309880 4309901 -158290029 + AT_rich Low_complexity Low_complexity 1 21 0 207 69 0 0 chrX 4310954 4310983 -158288947 + (GA)n Simple_repeat Simple_repeat 1 29 0 781 292 70 107 chrX 4311374 4311757 -158288173 + L1ME1 LINE L1 62 413 -5983 2607 97 8 3 chrX 4311757 4312118 -158287812 - THE1B LTR MaLR -1 363 1 781 292 70 107 chrX 4312118 4312378 -158287552 + L1ME1 LINE L1 413 681 -5715 1998 103 33 0 chrX 4312405 4312678 -158287252 - AluSx SINE Alu -30 282 1 410 255 0 0 chrX 4312708 4312810 -158287120 + L1ME1 LINE L1 693 794 -5602 2001 253 69 35 chrX 4312886 4313400 -158286530 + L1ME1 LINE L1 4357 4852 -1383 369 0 0 0 chrX 4313400 4313441 -158286489 + (CA)n Simple_repeat Simple_repeat 2 42 0 2001 253 69 35 chrX 4313441 4314198 -158285732 + L1ME1 LINE L1 4852 5673 -562 * 5437 70 28 8 chrX 4314195 4314949 -158284981 - L1P LINE L1 -2023 4123 3355 * 6019 95 3 9 chrX 4314948 4315832 -158284098 - L1P LINE L1 -3016 3130 2252 9052 73 7 0 chrX 4315832 4317847 -158282083 + L1PA7 LINE L1 4115 6152 -2 1005 268 26 60 chrX 4317847 4318348 -158281582 + L1ME1 LINE L1 5664 6147 -88 395 229 46 78 chrX 4318279 4318432 -158281498 + L1MA10 LINE L1 6240 6387 -16 * 21 57 0 0 chrX 4318578 4318613 -158281317 + AT_rich Low_complexity Low_complexity 1 35 0 4419 126 18 18 chrX 4319832 4320554 -158279376 + L1PA16 LINE L1 5444 6165 -1 2514 99 0 50 chrX 4321323 4321706 -158278224 - THE1B LTR MaLR 0 364 1 1235 76 6 0 chrX 4322173 4322344 -158277586 - L1PA5 LINE L1 -1 6153 5982 216 0 0 0 chrX 4322656 4322680 -158277250 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 22 0 0 0 chrX 4323739 4323761 -158276169 + AT_rich Low_complexity Low_complexity 1 22 0 297 183 0 0 chrX 4324054 4324114 -158275816 + GA-rich Low_complexity Low_complexity 1 60 0 1962 153 0 7 chrX 4324160 4324468 -158275462 + AluJb SINE Alu 1 306 -6 1704 163 3 7 chrX 4324904 4325187 -158274743 - AluJo SINE Alu -19 293 12 894 218 35 0 chrX 4326127 4326329 -158273601 + MER3 DNA MER1_type 1 209 0 408 277 168 7 chrX 4326349 4326486 -158273444 + MER5A DNA MER1_type 30 188 -1 2274 107 0 3 chrX 4327458 4327784 -158272146 + AluSx SINE Alu 12 336 0 1169 217 19 139 chrX 4328095 4328385 -158271545 - MLT1C LTR MaLR -42 425 214 4656 112 6 17 chrX 4328385 4329084 -158270846 - LTR8 LTR ERV1 0 691 1 1169 217 19 139 chrX 4329084 4329276 -158270654 - MLT1C LTR MaLR -253 214 1 24 53 0 0 chrX 4331553 4331591 -158268339 + AT_rich Low_complexity Low_complexity 1 38 0 1999 178 72 2 chrX 4331654 4332054 -158267876 - MSTA LTR MaLR 0 428 1 1017 110 0 7 chrX 4332054 4332209 -158267721 - MSTA-int LTR MaLR 0 1651 1498 374 364 78 33 chrX 4332256 4332772 -158267158 - ERVL LTR ERVL -648 5116 4578 2567 217 19 15 chrX 4333199 4333725 -158266205 + MER74A LTR ERVL 31 558 0 1765 166 3 14 chrX 4333820 4334115 -158265815 + AluJb SINE Alu 1 292 -20 1882 133 0 11 chrX 4334366 4334644 -158265286 + AluSx SINE Alu 1 275 -37 2239 149 31 24 chrX 4335330 4335713 -158264217 + LTR26 LTR ERV1 218 603 0 285 140 0 0 chrX 4336111 4336168 -158263762 + (TC)n Simple_repeat Simple_repeat 2 58 0 285 29 0 0 chrX 4336168 4336202 -158263728 + (CA)n Simple_repeat Simple_repeat 1 34 0 264 59 0 0 chrX 4336202 4336236 -158263694 + (GA)n Simple_repeat Simple_repeat 1 34 0 25 51 0 0 chrX 4337345 4337384 -158262546 + AT_rich Low_complexity Low_complexity 1 39 0 240 242 0 0 chrX 4338035 4338097 -158261833 - L1M4 LINE L1 -2393 3753 3692 1352 6 17 17 chrX 4338101 4338279 -158261651 + (TTTC)n Simple_repeat Simple_repeat 3 180 0 1848 155 10 3 chrX 4338294 4338585 -158261345 - AluJb SINE Alu -19 293 1 422 310 7 35 chrX 4338733 4338875 -158261055 - MIR SINE MIR -89 173 36 299 293 0 57 chrX 4339270 4339393 -158260537 + L2 LINE L2 1799 1914 -1400 1412 139 9 0 chrX 4339442 4339672 -158260258 - MLT1B LTR MaLR 0 390 159 2087 172 6 10 chrX 4339673 4340063 -158259867 - MLT1B LTR MaLR 0 396 4 4179 74 26 0 chrX 4340096 4340661 -158259269 + LTR19B LTR ERV1 1 580 0 183 328 52 43 chrX 4340692 4340808 -158259122 - L2 LINE L2 -18 3254 3138 1807 153 45 29 chrX 4340980 4341107 -158258823 + L1MB3 LINE L1 5796 5919 -264 2357 194 31 82 chrX 4341107 4341752 -158258178 - LTR9 LTR ERV1 0 612 1 1807 153 45 29 chrX 4341752 4342002 -158257928 + L1MB3 LINE L1 5919 6179 -4 186 71 0 0 chrX 4342043 4342071 -158257859 + (CAA)n Simple_repeat Simple_repeat 3 30 0 231 324 59 0 chrX 4343292 4343360 -158256570 + MIR SINE MIR 24 95 -167 1503 134 20 24 chrX 4343962 4344208 -158255722 + AluJb SINE Alu 36 280 -32 689 221 0 6 chrX 4344213 4344385 -158255545 + GA-rich Low_complexity Low_complexity 1 171 0 261 0 0 0 chrX 4344386 4344415 -158255515 + (GAAA)n Simple_repeat Simple_repeat 1 29 0 186 344 74 25 chrX 4344884 4345047 -158254883 + MIR3 SINE MIR 37 207 -1 239 283 33 22 chrX 4345868 4345960 -158253970 - MIR SINE MIR -122 140 48 1449 194 4 0 chrX 4346669 4346916 -158253014 + AluJo SINE Alu 39 286 -26 438 140 30 0 chrX 4346953 4347053 -158252877 + (TA)n Simple_repeat Simple_repeat 1 103 0 390 159 0 0 chrX 4347078 4347106 -158252824 + (TG)n Simple_repeat Simple_repeat 2 70 0 348 24 0 0 chrX 4347106 4347147 -158252783 + (TG)n Simple_repeat Simple_repeat 2 42 0 414 0 0 0 chrX 4347276 4347322 -158252608 + (TA)n Simple_repeat Simple_repeat 2 47 0 519 209 6 12 chrX 4348118 4348281 -158251649 + CT-rich Low_complexity Low_complexity 1 162 0 269 185 0 12 chrX 4348296 4348377 -158251553 + CT-rich Low_complexity Low_complexity 2 81 0 680 75 0 0 chrX 4349876 4349970 -158249960 - AluY SINE Alu -13 298 205 243 174 76 65 chrX 4350678 4350770 -158249160 + L1M4 LINE L1 3375 3467 -2679 333 222 42 14 chrX 4351231 4351375 -158248555 + (TA)n Simple_repeat Simple_repeat 2 149 0 283 220 71 64 chrX 4351438 4351579 -158248351 + L1M4 LINE L1 4123 4264 -1882 24 32 0 0 chrX 4351614 4351645 -158248285 + AT_rich Low_complexity Low_complexity 1 31 0 2059 145 0 0 chrX 4351794 4352098 -158247832 + AluSx SINE Alu 1 304 -8 727 153 0 0 chrX 4352319 4352437 -158247493 - FLAM_C SINE Alu -15 118 1 353 290 85 82 chrX 4352648 4353048 -158246882 + L1MB3 LINE L1 4010 4410 -1736 335 167 103 0 chrX 4353090 4353168 -158246762 + L1MB3 LINE L1 4502 4587 -1559 387 125 0 0 chrX 4353171 4353243 -158246687 + (TG)n Simple_repeat Simple_repeat 2 73 0 1813 177 57 0 chrX 4353461 4353850 -158246080 + L1MB3 LINE L1 5770 6180 -3 1064 98 6 0 chrX 4354300 4354464 -158245466 + (GGAA)n Simple_repeat Simple_repeat 3 167 0 33 0 0 0 chrX 4354557 4354590 -158245340 + AT_rich Low_complexity Low_complexity 1 33 0 406 185 39 0 chrX 4355342 4355472 -158244458 + CT-rich Low_complexity Low_complexity 1 135 0 21 0 0 0 chrX 4355886 4355907 -158244023 + AT_rich Low_complexity Low_complexity 1 21 0 1135 183 0 29 chrX 4355907 4356115 -158243815 - AluJo SINE Alu -24 288 87 22 0 0 0 chrX 4356211 4356233 -158243697 + AT_rich Low_complexity Low_complexity 1 22 0 227 31 31 0 chrX 4356317 4356349 -158243581 + (CAAAAA)n Simple_repeat Simple_repeat 4 36 0 204 250 0 0 chrX 4356545 4356589 -158243341 - MIR SINE MIR 0 262 219 606 182 0 0 chrX 4356952 4357062 -158242868 - L1MA9 LINE L1 -33 6279 6170 1562 154 66 22 chrX 4357247 4357519 -158242411 + AluJb SINE Alu 1 284 -28 311 208 13 0 chrX 4357557 4357634 -158242296 + L1MA7 LINE L1 6210 6287 -4 37 0 0 0 chrX 4357635 4357672 -158242258 + AT_rich Low_complexity Low_complexity 1 37 0 2121 221 0 43 chrX 4357877 4358365 -158241565 + MLT1C LTR MaLR 1 467 0 2726 179 77 11 chrX 4358735 4359294 -158240636 + L1MA3 LINE L1 5545 6140 -165 2851 86 64 24 chrX 4359302 4359722 -158240208 + MLT2A1 LTR ERVL 1 437 -7 765 170 0 25 chrX 4359759 4359918 -158240012 + L1MA3 LINE L1 6151 6305 0 6602 55 2 28 chrX 4360028 4360900 -158239030 - L1PA7 LINE L1 -6 6148 5299 1788 162 18 26 chrX 4361027 4361367 -158238563 + THE1C LTR MaLR 1 337 -38 1097 143 0 0 chrX 4362180 4362369 -158237561 - L1MA3 LINE L1 -3 6302 6114 401 176 0 0 chrX 4362370 4362444 -158237486 + L1MA3 LINE L1 6037 6110 -195 24 0 0 0 chrX 4363526 4363550 -158236380 + AT_rich Low_complexity Low_complexity 1 24 0 34 24 0 0 chrX 4364918 4364959 -158234971 + AT_rich Low_complexity Low_complexity 1 41 0 21 0 0 0 chrX 4365224 4365245 -158234685 + AT_rich Low_complexity Low_complexity 1 21 0 256 24 24 24 chrX 4365305 4365347 -158234583 + (TTTTTA)n Simple_repeat Simple_repeat 1 42 0 14239 25 3 0 chrX 4365347 4367798 -158232132 - L1PA3 LINE L1 -2 6153 3697 8472 31 0 1 chrX 4367799 4368842 -158231088 + L1PA3 LINE L1 2650 3691 -2455 262 284 0 0 chrX 4369690 4369785 -158230145 - L1MB8 LINE L1 -2 6176 6082 1098 242 100 24 chrX 4373391 4373824 -158226106 - MLT1C LTR MaLR 0 467 1 310 363 67 9 chrX 4373824 4374047 -158225883 + L1MC5 LINE L1 7666 7901 -60 21 0 0 0 chrX 4374075 4374096 -158225834 + AT_rich Low_complexity Low_complexity 1 21 0 601 153 19 10 chrX 4374098 4374197 -158225733 - L1MA7 LINE L1 -497 5806 5705 2682 136 20 36 chrX 4374197 4374695 -158225235 + L1MA7 LINE L1 5800 6290 -1 601 153 19 10 chrX 4374695 4374711 -158225219 - L1MB8 LINE L1 -598 5705 5691 306 0 0 0 chrX 4374821 4374855 -158225075 + (CA)n Simple_repeat Simple_repeat 2 35 0 621 229 10 47 chrX 4374863 4375055 -158224875 + L1MB5 LINE L1 5980 6164 -10 24 0 0 0 chrX 4375336 4375360 -158224570 + AT_rich Low_complexity Low_complexity 1 24 0 3759 90 14 31 chrX 4375360 4375949 -158223981 - L1MA1 LINE L1 -3 6299 5721 1006 87 67 0 chrX 4375959 4376108 -158223822 - L1MA1 LINE L1 -696 5606 5448 1816 152 16 70 chrX 4376427 4376801 -158223129 - MLT1A1 LTR MaLR 0 365 12 910 229 161 0 chrX 4376808 4377088 -158222842 + MLT1D LTR MaLR 181 505 0 333 323 123 13 chrX 4377823 4377978 -158221952 - MIR SINE MIR -88 174 3 2254 120 22 27 chrX 4378020 4378386 -158221544 - THE1B LTR MaLR 0 364 1 2178 117 10 67 chrX 4378757 4379143 -158220787 + THE1B LTR MaLR 1 364 0 246 62 0 0 chrX 4379261 4379293 -158220637 + (CA)n Simple_repeat Simple_repeat 1 32 0 1517 197 55 0 chrX 4379674 4379963 -158219967 + AluJb SINE Alu 1 305 -7 315 313 172 0 chrX 4379995 4380129 -158219801 - MER5A DNA MER1_type -1 188 32 1361 228 81 29 chrX 4380130 4380574 -158219356 + MLT1C LTR MaLR 1 467 0 1793 219 77 11 chrX 4381729 4382011 -158217919 + MLT1D LTR MaLR 22 309 -158 234 0 0 0 chrX 4382011 4382037 -158217893 + (TTTTG)n Simple_repeat Simple_repeat 5 30 0 1793 219 77 11 chrX 4382037 4382208 -158217722 + MLT1D LTR MaLR 309 467 0 26 30 0 0 chrX 4383488 4383521 -158216409 + AT_rich Low_complexity Low_complexity 1 33 0 257 237 31 10 chrX 4383568 4383665 -158216265 + (TA)n Simple_repeat Simple_repeat 2 100 0 401 240 91 32 chrX 4383768 4383922 -158216008 - MIR SINE MIR -71 191 29 286 301 65 32 chrX 4383968 4384036 -158215894 + MER5A DNA MER1_type 63 138 -51 2160 55 0 0 chrX 4384036 4384308 -158215622 - L1PA6 LINE L1 -8 6146 5875 286 301 65 32 chrX 4384308 4384362 -158215568 + MER5A DNA MER1_type 138 189 0 1052 234 76 45 chrX 4384717 4385114 -158214816 - MLT1C LTR MaLR 0 467 59 239 95 48 0 chrX 4385123 4385165 -158214765 + (TATG)n Simple_repeat Simple_repeat 2 45 0 637 308 39 4 chrX 4386855 4387089 -158212841 + MIR SINE MIR 18 259 -3 219 215 0 31 chrX 4387386 4387413 -158212517 + (TA)n Simple_repeat Simple_repeat 2 28 -36 2235 85 10 14 chrX 4387413 4387544 -158212386 + AluSx SINE Alu 3 133 -179 2532 57 0 0 chrX 4387544 4387845 -158212085 + AluY SINE Alu 1 301 -10 2235 85 10 14 chrX 4387845 4388007 -158211923 + AluSx SINE Alu 133 295 -17 219 215 0 31 chrX 4388007 4388044 -158211886 + (TA)n Simple_repeat Simple_repeat 28 64 0 24 0 0 0 chrX 4388146 4388170 -158211760 + AT_rich Low_complexity Low_complexity 1 24 0 1974 167 12 6 chrX 4388997 4389338 -158210592 - MER61A LTR ERV1 0 343 1 517 215 35 7 chrX 4389780 4389932 -158209998 - MER58B DNA MER1_type -25 316 33 1121 189 0 32 chrX 4390887 4391104 -158208826 + AluJo SINE Alu 1 210 -102 414 171 98 0 chrX 4391132 4391214 -158208716 + AluJo SINE Alu 192 281 -31 1313 66 0 11 chrX 4391221 4391403 -158208527 + (GAAA)n Simple_repeat Simple_repeat 1 180 0 231 36 0 0 chrX 4391403 4391431 -158208499 + (GGAA)n Simple_repeat Simple_repeat 1 28 0 1082 126 0 11 chrX 4391433 4391615 -158208315 + (GAAA)n Simple_repeat Simple_repeat 1 180 0 1837 153 10 7 chrX 4391620 4391920 -158208010 + AluSx SINE Alu 1 301 -11 1371 236 159 14 chrX 4392225 4392666 -158207264 + MLT1D LTR MaLR 1 505 0 1565 187 32 7 chrX 4393022 4393305 -158206625 + AluJo SINE Alu 1 290 -22 28 29 0 0 chrX 4393305 4393340 -158206590 + AT_rich Low_complexity Low_complexity 1 35 0 1334 238 116 7 chrX 4393589 4394022 -158205908 + MLT2B1 LTR ERVL 1 480 -40 2016 146 0 10 chrX 4394079 4394380 -158205550 + AluSx SINE Alu 1 298 -14 1082 248 75 9 chrX 4394386 4394708 -158205222 - MER2 DNA MER2_type 0 344 2 306 253 6 22 chrX 4394875 4395057 -158204873 + (TA)n Simple_repeat Simple_repeat 1 179 0 200 318 0 0 chrX 4395060 4395126 -158204804 + (CATA)n Simple_repeat Simple_repeat 1 66 0 321 26 0 0 chrX 4395126 4395164 -158204766 + (TG)n Simple_repeat Simple_repeat 1 38 0 1263 39 0 6 chrX 4395632 4395788 -158204142 - L1PA4 LINE L1 -8 6147 5993 692 194 61 0 chrX 4396578 4396743 -158203187 - MER53 DNA DNA -3 186 12 675 240 23 73 chrX 4397025 4397124 -158202806 - L1M4 LINE L1 -2659 3487 3385 3727 126 0 13 chrX 4397124 4397658 -158202272 - MER1A DNA MER1_type 0 527 1 675 240 23 73 chrX 4397658 4397887 -158202043 - L1M4 LINE L1 -2761 3385 3174 23 33 0 0 chrX 4398188 4398218 -158201712 + AT_rich Low_complexity Low_complexity 1 30 0 * 250 114 0 0 chrX 4398212 4398247 -158201683 - L1PA15 LINE L1 -596 5569 5535 3738 152 3 0 chrX 4398244 4398848 -158201082 + L1PA15 LINE L1 5560 6165 0 978 132 0 0 chrX 4399106 4399290 -158200640 + L1PB3 LINE L1 6006 6189 0 4292 138 25 4 chrX 4400987 4401717 -158198213 + L1MA4A LINE L1 5555 6299 -4 2457 88 70 3 chrX 4402263 4402604 -158197326 - THE1B LTR MaLR 0 364 1 358 250 0 0 chrX 4404253 4404333 -158195597 + MLT1E1 LTR MaLR 51 130 -463 965 248 37 25 chrX 4404460 4404756 -158195174 + MLT1E1 LTR MaLR 288 654 0 21 0 0 0 chrX 4404997 4405018 -158194912 + AT_rich Low_complexity Low_complexity 1 21 0 1151 102 11 0 chrX 4405316 4405492 -158194438 + (GAAA)n Simple_repeat Simple_repeat 1 178 0 440 190 0 10 chrX 4405497 4405597 -158194333 + GA-rich Low_complexity Low_complexity 4 102 0 1773 153 52 0 chrX 4405672 4405960 -158193970 + AluSx SINE Alu 3 305 -7 22 0 0 0 chrX 4406132 4406154 -158193776 + AT_rich Low_complexity Low_complexity 1 22 0 1672 194 75 75 chrX 4406218 4406738 -158193192 + MLT2B1 LTR ERVL 1 520 0 1159 257 39 41 chrX 4407088 4407426 -158192504 - MLT1G LTR MaLR -11 579 243 308 328 60 40 chrX 4407686 4407887 -158192043 - L1M4c LINE L1 -4735 1649 1445 23 0 0 0 chrX 4408190 4408213 -158191717 + AT_rich Low_complexity Low_complexity 1 23 0 23 68 0 0 chrX 4409024 4409068 -158190862 + AT_rich Low_complexity Low_complexity 1 44 0 2760 88 0 11 chrX 4409691 4410068 -158189862 - THE1C LTR MaLR 0 375 3 282 289 0 7 chrX 4410125 4410264 -158189666 + CT-rich Low_complexity Low_complexity 1 137 0 * 934 137 6 6 chrX 4410258 4410433 -158189497 + (TTCC)n Simple_repeat Simple_repeat 3 177 0 2202 110 0 3 chrX 4410832 4411142 -158188788 - AluSq SINE Alu -4 309 1 30 0 0 0 chrX 4411524 4411554 -158188376 + AT_rich Low_complexity Low_complexity 1 30 0 2434 161 5 31 chrX 4412775 4413221 -158186709 + Tigger2a DNA MER2_type 1 434 0 2481 101 28 6 chrX 4413630 4413986 -158185944 - THE1B LTR MaLR 0 364 1 193 392 13 0 chrX 4414047 4414126 -158185804 - L2 LINE L2 -27 3286 3207 203 175 0 0 chrX 4414514 4414554 -158185376 + T-rich Low_complexity Low_complexity 1 40 0 1832 246 109 42 chrX 4414865 4415228 -158184702 + L1MC/D LINE L1 1174 1511 -4915 3374 81 0 62 chrX 4415228 4415372 -158184558 + L1PB1 LINE L1 5665 5816 -335 183 42 0 0 chrX 4415372 4415396 -158184534 + (CA)n Simple_repeat Simple_repeat 2 25 0 3374 81 0 62 chrX 4415396 4415768 -158184162 + L1PB1 LINE L1 5816 6149 -2 1832 246 109 42 chrX 4415768 4415792 -158184138 + L1MC/D LINE L1 1511 1532 -4894 1638 133 4 0 chrX 4415792 4416025 -158183905 + AluSq SINE Alu 1 234 -79 1832 246 109 42 chrX 4416025 4416116 -158183814 + L1MC/D LINE L1 1532 1615 -4811 12334 24 0 0 chrX 4416116 4418334 -158181596 + L1PA3 LINE L1 3935 6152 -3 1832 246 109 42 chrX 4418334 4418949 -158180981 + L1MC/D LINE L1 1615 2343 -4083 1778 281 42 81 chrX 4418965 4419344 -158180586 + L1MC/D LINE L1 4070 4462 -1964 2408 53 0 0 chrX 4419344 4419650 -158180280 + AluY SINE Alu 1 306 0 1778 281 42 81 chrX 4419650 4420612 -158179318 + L1MC/D LINE L1 4462 5360 -1066 253 62 62 21 chrX 4420743 4420791 -158179139 - L1MD3 LINE L1 -1165 6830 6781 338 252 0 44 chrX 4420839 4420974 -158178956 - L1M4 LINE L1 -1819 4327 4199 189 195 0 0 chrX 4420992 4421033 -158178897 + (CATA)n Simple_repeat Simple_repeat 4 44 0 227 132 0 0 chrX 4421038 4421076 -158178854 - L1MA9 LINE L1 -82 6230 6193 1837 203 45 25 chrX 4421080 4421662 -158178268 + L1MC/D LINE L1 5386 5983 -743 2543 162 7 4 chrX 4422609 4423065 -158176865 + L1PA16 LINE L1 5710 6166 0 225 183 33 33 chrX 4423663 4423723 -158176207 + GA-rich Low_complexity Low_complexity 4 63 0 252 86 0 0 chrX 4423809 4423844 -158176086 + (T)n Simple_repeat Simple_repeat 1 35 0 1845 74 4 0 chrX 4423855 4424084 -158175846 - AluSp SINE Alu -83 230 1 38 75 0 0 chrX 4424366 4424446 -158175484 + AT_rich Low_complexity Low_complexity 1 80 0 352 222 35 23 chrX 4424451 4424622 -158175308 + (TA)n Simple_repeat Simple_repeat 1 173 0 242 214 38 10 chrX 4424690 4424987 -158174943 + (TA)n Simple_repeat Simple_repeat 1 305 0 330 153 0 0 chrX 4426738 4426797 -158173133 + GA-rich Low_complexity Low_complexity 2 60 0 613 285 29 37 chrX 4426822 4427064 -158172866 - LTR16A1 LTR ERVL 0 457 218 369 263 60 8 chrX 4427203 4427336 -158172594 - LTR16A1 LTR ERVL -100 357 218 477 151 0 0 chrX 4427336 4427422 -158172508 + GA-rich Low_complexity Low_complexity 2 87 0 421 194 68 29 chrX 4427507 4427592 -158172338 + MER20 DNA MER1_type 7 95 -124 1975 149 26 29 chrX 4427592 4427975 -158171955 - LTR8 LTR ERV1 0 691 310 1584 181 6 40 chrX 4428044 4428370 -158171560 - LTR8 LTR ERV1 -376 315 1 462 250 17 8 chrX 4428370 4428490 -158171440 + MER20 DNA MER1_type 95 215 -4 325 316 0 34 chrX 4428504 4428621 -158171309 - LTR16A1 LTR ERVL -342 115 3 6345 47 0 0 chrX 4428697 4429470 -158170460 - L1PA5 LINE L1 0 6154 5382 1808 144 115 11 chrX 4429506 4429911 -158170019 - MER84 LTR ERVI -2 505 1 22 0 0 0 chrX 4430131 4430153 -158169777 + AT_rich Low_complexity Low_complexity 1 22 0 1512 205 98 8 chrX 4430960 4431316 -158168614 + MLT2C1 LTR ERVL 8 395 -2 211 200 16 54 chrX 4431615 4431800 -158168130 + (TCTA)n Simple_repeat Simple_repeat 1 178 0 231 258 0 15 chrX 4431807 4431873 -158168057 + (TCCA)n Simple_repeat Simple_repeat 1 65 0 568 58 58 29 chrX 4431876 4432015 -158167915 + (TCTA)n Simple_repeat Simple_repeat 2 144 0 244 287 149 35 chrX 4432380 4432554 -158167376 - L1MC/D LINE L1 -2172 5636 5443 1914 180 20 9 chrX 4432706 4433050 -158166880 + MER7A DNA MER2_type 1 346 0 351 0 0 0 chrX 4433242 4433281 -158166649 + (TG)n Simple_repeat Simple_repeat 1 39 0 231 61 0 0 chrX 4433281 4433314 -158166616 + (GA)n Simple_repeat Simple_repeat 2 34 0 378 319 70 75 chrX 4433521 4434133 -158165797 - HAL1 LINE L1 -1051 1456 848 320 109 0 18 chrX 4434196 4434251 -158165679 + (TCC)n Simple_repeat Simple_repeat 3 56 0 237 224 0 0 chrX 4434252 4434301 -158165629 + CT-rich Low_complexity Low_complexity 2 50 0 566 135 34 14 chrX 4434394 4434542 -158165388 + CT-rich Low_complexity Low_complexity 1 151 0 189 226 36 0 chrX 4434556 4434640 -158165290 + CT-rich Low_complexity Low_complexity 6 92 0 238 257 38 87 chrX 4435846 4436029 -158163901 - MIR SINE MIR -17 245 72 1804 130 0 50 chrX 4436792 4437091 -158162839 - AluJb SINE Alu -26 286 3 506 302 14 0 chrX 4437096 4437235 -158162695 - MER5B DNA MER1_type -31 147 7 289 173 71 16 chrX 4437759 4437886 -158162044 + (TA)n Simple_repeat Simple_repeat 1 134 0 2421 193 38 24 chrX 4437918 4438452 -158161478 - L1MB4 LINE L1 -40 6140 5600 205 305 46 30 chrX 4438505 4438636 -158161294 - MIR SINE MIR -127 135 3 706 312 20 8 chrX 4439039 4439286 -158160644 + MIR SINE MIR 12 261 -1 343 237 0 0 chrX 4439457 4439533 -158160397 + MLT1F1 LTR MaLR 84 159 -408 1633 170 0 14 chrX 4439549 4439831 -158160099 - AluJo SINE Alu -9 303 26 233 239 0 41 chrX 4440265 4440333 -158159597 - MIR SINE MIR -88 120 61 2426 86 0 0 chrX 4440338 4440640 -158159290 - AluSx SINE Alu -9 303 2 314 305 26 20 chrX 4442047 4442198 -158157732 - L1MC4 LINE L1 -975 7067 6916 556 276 35 44 chrX 4442219 4442534 -158157396 + L1MC5 LINE L1 7087 7398 -563 4217 154 18 11 chrX 4442542 4443251 -158156679 + MER50 LTR ERV1 2 715 -19 292 280 6 12 chrX 4443459 4443627 -158156303 + GA-rich Low_complexity Low_complexity 3 169 0 228 310 0 0 chrX 4444187 4444245 -158155685 + MIR SINE MIR 11 68 -194 271 234 13 26 chrX 4444304 4444381 -158155549 + MIR SINE MIR 174 249 -13 391 231 12 89 chrX 4444506 4444675 -158155255 + MIR SINE MIR 94 249 -13 734 331 33 19 chrX 4445024 4445417 -158154513 - LTR16A LTR ERVL 0 457 52 25 0 0 0 chrX 4445896 4445921 -158154009 + AT_rich Low_complexity Low_complexity 1 25 0 836 178 51 47 chrX 4446067 4446281 -158153649 + AluJo SINE Alu 85 299 -13 228 227 13 53 chrX 4446326 4446401 -158153529 - L1ME4a LINE L1 -100 6021 5950 22 0 0 0 chrX 4446408 4446430 -158153500 + AT_rich Low_complexity Low_complexity 1 22 0 315 0 0 0 chrX 4447212 4447247 -158152683 + (CA)n Simple_repeat Simple_repeat 2 36 0 215 149 0 21 chrX 4448460 4448507 -158151423 + (TAGA)n Simple_repeat Simple_repeat 1 46 0 335 233 0 7 chrX 4448548 4448694 -158151236 + (TA)n Simple_repeat Simple_repeat 2 146 0 276 30 0 0 chrX 4448694 4448727 -158151203 + (GA)n Simple_repeat Simple_repeat 2 34 0 217 338 0 0 chrX 4449442 4449510 -158150420 + MIR3 SINE MIR 113 180 -28 192 77 0 0 chrX 4452864 4452890 -158147040 + (TG)n Simple_repeat Simple_repeat 2 27 0 1485 176 10 60 chrX 4452890 4453191 -158146739 - AluJo SINE Alu -26 286 1 333 309 19 37 chrX 4453740 4453902 -158146028 + MER3 DNA MER1_type 17 128 -81 221 318 0 0 chrX 4453928 4453994 -158145936 + (CATATA)n Simple_repeat Simple_repeat 3 68 0 206 336 10 0 chrX 4455206 4455310 -158144620 + (TA)n Simple_repeat Simple_repeat 2 106 0 207 0 0 0 chrX 4455310 4455333 -158144597 + (CA)n Simple_repeat Simple_repeat 2 24 0 1620 191 19 3 chrX 4455341 4455655 -158144275 - MER2 DNA MER2_type -25 320 2 304 141 18 61 chrX 4455660 4455823 -158144107 + (TA)n Simple_repeat Simple_repeat 1 156 0 193 130 15 84 chrX 4455841 4455972 -158143958 + (TA)n Simple_repeat Simple_repeat 1 122 0 312 243 23 34 chrX 4455991 4456012 -158143918 + (TA)n Simple_repeat Simple_repeat 2 22 -154 1799 144 3 89 chrX 4456012 4456338 -158143592 + AluSx SINE Alu 1 298 -14 312 243 23 34 chrX 4456338 4456493 -158143437 + (TA)n Simple_repeat Simple_repeat 22 176 0 282 224 0 0 chrX 4456582 4456640 -158143290 + L1MCc LINE L1 -540 4294966813 -6347 276 348 105 20 chrX 4457364 4457715 -158142215 + L1MCc LINE L1 597 977 -4887 41 48 0 0 chrX 4457726 4457788 -158142142 + AT_rich Low_complexity Low_complexity 1 62 0 263 299 82 42 chrX 4457897 4458325 -158141605 + L1MCc LINE L1 1249 1748 -4815 479 261 144 39 chrX 4458359 4458692 -158141238 + L1MCc LINE L1 2696 3063 -3319 225 300 0 12 chrX 4458748 4458828 -158141102 + GA-rich Low_complexity Low_complexity 1 79 0 27 29 0 0 chrX 4458831 4458865 -158141065 + AT_rich Low_complexity Low_complexity 1 34 0 886 249 75 34 chrX 4458924 4459401 -158140529 + L1ME3 LINE L1 5665 6161 -1 349 101 62 23 chrX 4460064 4460193 -158139737 + (TA)n Simple_repeat Simple_repeat 1 134 0 800 274 19 63 chrX 4461387 4461766 -158138164 - L1ME2 LINE L1 -11 6153 5792 2342 75 6 25 chrX 4461898 4462216 -158137714 - AluSx SINE Alu 0 312 1 1866 109 60 0 chrX 4463218 4463530 -158136400 - AluSx SINE Alu 0 328 1 195 222 0 0 chrX 4464006 4464051 -158135879 + (CA)n Simple_repeat Simple_repeat 2 46 0 29 0 0 0 chrX 4464112 4464141 -158135789 + AT_rich Low_complexity Low_complexity 1 29 0 2333 98 131 6 chrX 4464434 4464800 -158135130 + MSTA LTR MaLR 14 425 -3 333 221 168 44 chrX 4464847 4464960 -158134970 - MER58A DNA MER1_type 0 156 30 227 250 0 0 chrX 4465768 4465824 -158134106 + (TG)n Simple_repeat Simple_repeat 1 56 0 24 0 0 0 chrX 4466303 4466327 -158133603 + AT_rich Low_complexity Low_complexity 1 24 0 1090 262 62 59 chrX 4466614 4467102 -158132828 + MLT1D LTR MaLR 16 504 -1 1977 142 0 34 chrX 4467961 4468284 -158131646 + AluJb SINE Alu 1 312 0 801 103 135 70 chrX 4468347 4468503 -158131427 - L1MC1 LINE L1 0 6333 6168 240 203 203 0 chrX 4468572 4468636 -158131294 - LTR16B LTR ERVL 0 464 388 215 329 0 0 chrX 4468710 4468789 -158131141 + T-rich Low_complexity Low_complexity 4 82 0 2096 151 30 30 chrX 4468804 4469168 -158130762 - THE1B LTR MaLR 0 364 1 1068 133 0 0 chrX 4469207 4469387 -158130543 + (CAT)n Simple_repeat Simple_repeat 1 180 0 195 42 0 0 chrX 4469399 4469423 -158130507 + (CACCAT)n Simple_repeat Simple_repeat 1 24 0 1734 173 119 61 chrX 4469866 4470276 -158129654 - Tigger2a DNA MER2_type 0 434 1 1279 121 0 0 chrX 4471095 4471268 -158128662 + AluSx SINE Alu 1 173 -139 481 143 11 55 chrX 4471269 4471360 -158128570 + MSTA LTR MaLR 342 428 0 1060 164 180 16 chrX 4471387 4471631 -158128299 - MSTA LTR MaLR -134 294 11 2110 127 0 7 chrX 4472119 4472418 -158127512 - AluSx SINE Alu -15 297 1 1449 81 0 0 chrX 4472444 4472630 -158127300 - L1P LINE L1 -1989 4157 3972 274 265 70 114 chrX 4472772 4473044 -158126886 - MLT1J LTR MaLR -23 488 229 3303 233 31 17 chrX 4473358 4474238 -158125692 - L1MB7 LINE L1 -5 6179 5288 198 258 79 45 chrX 4474619 4474708 -158125222 - L3b LINE CR1 -216 1367 1276 758 233 48 37 chrX 4475660 4475849 -158124081 - MLT1E LTR MaLR -32 561 371 207 311 67 11 chrX 4476132 4476222 -158123708 + L2 LINE L2 2947 3041 -231 1737 146 26 0 chrX 4476340 4476607 -158123323 - AluSx SINE Alu -38 274 1 5476 98 24 17 chrX 4476956 4477616 -158122314 + L1PB1 LINE L1 5299 5968 -183 1978 149 0 7 chrX 4477616 4477917 -158122013 + AluSx SINE Alu 7 305 -7 5476 98 24 17 chrX 4477917 4478096 -158121834 + L1PB1 LINE L1 5968 6144 -7 21 36 0 0 chrX 4478415 4478443 -158121487 + AT_rich Low_complexity Low_complexity 1 28 0 199 146 36 0 chrX 4478844 4478899 -158121031 + T-rich Low_complexity Low_complexity 3 59 0 21 0 0 0 chrX 4479004 4479025 -158120905 + AT_rich Low_complexity Low_complexity 1 21 0 201 286 75 60 chrX 4479029 4479162 -158120768 - MIR SINE MIR -96 166 32 597 99 0 62 chrX 4479826 4480018 -158119912 + (TA)n Simple_repeat Simple_repeat 1 180 0 1693 160 10 10 chrX 4480286 4480593 -158119337 + L1MA8 LINE L1 5750 6056 -235 511 203 8 8 chrX 4480593 4480722 -158119208 + L1MA7 LINE L1 6159 6291 0 557 146 10 10 chrX 4480723 4480826 -158119104 + L1MC3 LINE L1 7682 7784 -1 227 200 50 50 chrX 4481031 4481111 -158118819 + (TATATG)n Simple_repeat Simple_repeat 6 85 0 183 184 0 0 chrX 4481116 4481154 -158118776 + (CA)n Simple_repeat Simple_repeat 1 38 0 25 0 0 0 chrX 4482095 4482120 -158117810 + AT_rich Low_complexity Low_complexity 1 25 0 203 291 0 0 chrX 4484110 4484165 -158115765 + (TTA)n Simple_repeat Simple_repeat 2 56 0 2067 147 0 3 chrX 4484236 4484548 -158115382 + AluSx SINE Alu 1 311 -1 445 272 80 0 chrX 4486783 4486908 -158113022 + MIR SINE MIR 84 218 -44 2818 222 39 47 chrX 4487921 4488150 -158111780 + L1MB8 LINE L1 4590 4819 -1359 2472 151 25 23 chrX 4488150 4488582 -158111348 - Tigger2a DNA MER2_type 0 434 2 2818 222 39 47 chrX 4488582 4489220 -158110710 + L1MB8 LINE L1 4819 5428 -750 1846 163 20 0 chrX 4489220 4489514 -158110416 + AluSx SINE Alu 1 300 -12 2818 222 39 47 chrX 4489514 4490055 -158109875 + L1MB8 LINE L1 5428 5972 -206 2183 168 28 30 chrX 4490346 4490852 -158109078 + L1MA8 LINE L1 5780 6284 -7 916 174 54 0 chrX 4490948 4491097 -158108833 - AluJo SINE Alu -27 285 129 723 104 0 0 chrX 4491116 4491222 -158108708 + (TC)n Simple_repeat Simple_repeat 1 106 0 788 173 0 0 chrX 4491222 4491355 -158108575 - AluJo SINE Alu -169 133 1 295 216 57 11 chrX 4491686 4491774 -158108156 - AluSg SINE Alu -207 93 2 1282 193 68 15 chrX 4492036 4492300 -158107630 + AluJo SINE Alu 1 278 -34 709 181 129 0 chrX 4492301 4492456 -158107474 + L1PA16 LINE L1 5983 6157 -9 28 29 0 0 chrX 4492456 4492491 -158107439 + AT_rich Low_complexity Low_complexity 1 35 0 26 50 0 0 chrX 4492520 4492560 -158107370 + AT_rich Low_complexity Low_complexity 1 40 0 2026 131 0 3 chrX 4493017 4493307 -158106623 + AluSx SINE Alu 1 289 -23 445 272 80 0 chrX 4495564 4495689 -158104241 + MIR SINE MIR 84 218 -44 292 300 57 37 chrX 4496612 4497103 -158102827 + MER90 LTR ERV1 1 597 -17 210 158 0 0 chrX 4497154 4497192 -158102738 + T-rich Low_complexity Low_complexity 1 38 0 235 229 84 36 chrX 4497375 4497458 -158102472 + MER5A DNA MER1_type 26 112 -77 328 222 49 0 chrX 4497985 4498066 -158101864 + L2 LINE L2 3188 3272 0 412 271 23 17 chrX 4498199 4498359 -158101571 + (TATATG)n Simple_repeat Simple_repeat 1 159 -460 1432 189 66 0 chrX 4498359 4498677 -158101253 - MER44D DNA MER2_type 0 609 1 412 271 23 17 chrX 4498677 4498695 -158101235 + (TATATG)n Simple_repeat Simple_repeat 159 175 -444 270 0 0 0 chrX 4498695 4498725 -158101205 + (CA)n Simple_repeat Simple_repeat 2 31 0 412 271 23 17 chrX 4498725 4498815 -158101115 + (TATATG)n Simple_repeat Simple_repeat 175 619 0 291 256 23 11 chrX 4498852 4498936 -158100994 + (TA)n Simple_repeat Simple_repeat 2 84 -95 1712 206 21 0 chrX 4498936 4499276 -158100654 - MER7A DNA MER2_type 0 346 2 291 256 23 11 chrX 4499276 4499367 -158100563 + (TA)n Simple_repeat Simple_repeat 84 179 0 237 180 0 0 chrX 4500350 4500400 -158099530 + T-rich Low_complexity Low_complexity 1 50 0 226 244 0 0 chrX 4502153 4502198 -158097732 + (TATATG)n Simple_repeat Simple_repeat 3 47 0 240 163 0 0 chrX 4502844 4502887 -158097043 + CT-rich Low_complexity Low_complexity 3 45 0 803 246 65 5 chrX 4504163 4504362 -158095568 + MER20 DNA MER1_type 9 219 0 251 325 117 21 chrX 4505304 4505492 -158094438 + MIR SINE MIR 47 252 -10 213 179 0 39 chrX 4505688 4505766 -158094164 + (TA)n Simple_repeat Simple_repeat 1 75 0 701 207 14 24 chrX 4507223 4507726 -158092204 + CT-rich Low_complexity Low_complexity 1 497 0 237 303 57 51 chrX 4508795 4508970 -158090960 - MER113 DNA MER1_type? -1 520 345 180 158 0 0 chrX 4509012 4509050 -158090880 + T-rich Low_complexity Low_complexity 1 38 0 601 270 17 0 chrX 4509050 4509224 -158090706 - MER113 DNA MER1_type? -213 308 132 1452 242 25 28 chrX 4509463 4509897 -158090033 + MLT1C LTR MaLR 1 433 -34 1881 160 0 22 chrX 4509900 4510218 -158089712 - AluJb SINE Alu 0 312 2 180 179 0 0 chrX 4510991 4511030 -158088900 + (TATG)n Simple_repeat Simple_repeat 1 39 0 409 196 17 12 chrX 4511118 4511291 -158088639 + (TA)n Simple_repeat Simple_repeat 1 174 0 25 31 0 0 chrX 4511293 4511325 -158088605 + AT_rich Low_complexity Low_complexity 1 32 0 1778 158 13 20 chrX 4511455 4511581 -158088349 + AluJo SINE Alu 6 131 -181 1581 178 34 17 chrX 4511581 4511879 -158088051 + AluJo SINE Alu 1 303 -9 1778 158 13 20 chrX 4511879 4512056 -158087874 + AluJo SINE Alu 131 307 -5 336 176 0 0 chrX 4512258 4512326 -158087604 + (TG)n Simple_repeat Simple_repeat 1 68 0 180 0 0 0 chrX 4513416 4513436 -158086494 + (CA)n Simple_repeat Simple_repeat 2 21 0 1404 178 83 14 chrX 4515026 4515302 -158084628 - AluJb SINE Alu -17 295 1 205 294 101 37 chrX 4515686 4515795 -158084135 - MIR3 SINE MIR 0 208 93 189 0 0 0 chrX 4515854 4515875 -158084055 + (TATG)n Simple_repeat Simple_repeat 4 24 0 1683 134 31 28 chrX 4515875 4516155 -158083775 - AluJo SINE Alu -28 284 1 1756 120 8 8 chrX 4516175 4516434 -158083496 + AluSx SINE Alu 38 296 -16 522 222 6 11 chrX 4517220 4517400 -158082530 + GA-rich Low_complexity Low_complexity 1 179 0 389 252 7 0 chrX 4517423 4517574 -158082356 + GA-rich Low_complexity Low_complexity 1 152 0 1378 166 81 8 chrX 4517974 4518221 -158081709 + AluJo SINE Alu 7 271 -41 3394 167 58 36 chrX 4521076 4521416 -158078514 + LTR8A LTR ERV1 1 332 -395 826 125 0 17 chrX 4521416 4521536 -158078394 - L1PA15 LINE L1 -8 6157 6040 3394 167 58 36 chrX 4521536 4521907 -158078023 + LTR8A LTR ERV1 332 727 0 986 139 7 0 chrX 4522427 4522700 -158077230 + GA-rich Low_complexity Low_complexity 1 275 0 21 0 0 0 chrX 4522822 4522843 -158077087 + AT_rich Low_complexity Low_complexity 1 21 0 2885 107 0 0 chrX 4523334 4523698 -158076232 + THE1B LTR MaLR 1 364 0 362 151 14 0 chrX 4524177 4524250 -158075680 + (TA)n Simple_repeat Simple_repeat 2 75 0 2170 122 0 3 chrX 4525139 4525435 -158074495 - AluSx SINE Alu -17 295 1 1952 164 3 0 chrX 4526027 4526338 -158073592 - AluSx SINE Alu 0 312 1 272 321 0 0 chrX 4527110 4527191 -158072739 + MIR SINE MIR 89 169 -93 459 301 68 0 chrX 4528857 4529020 -158070910 - MLT1D LTR MaLR -264 241 68 1839 113 77 116 chrX 4529063 4529416 -158070514 + Charlie3 DNA MER1_type 1 2712 0 608 259 145 0 chrX 4529434 4529662 -158070268 - L1M4 LINE L1 -849 5297 5037 301 345 106 32 chrX 4529730 4530191 -158069739 - L2 LINE L2 -339 2975 2481 314 80 20 0 chrX 4530719 4530769 -158069161 + (TA)n Simple_repeat Simple_repeat 1 51 0 533 28 14 0 chrX 4530977 4531048 -158068882 + (GA)n Simple_repeat Simple_repeat 2 73 0 1670 124 0 0 chrX 4531835 4532076 -158067854 + L1MA5A LINE L1 6051 6291 -6 1995 117 6 22 chrX 4532167 4532483 -158067447 + AluSx SINE Alu 2 312 0 450 231 28 14 chrX 4532556 4532699 -158067231 - L1MB4 LINE L1 -36 6144 6000 1536 143 16 91 chrX 4532708 4533016 -158066914 - AluJb SINE Alu -16 296 12 2183 130 95 18 chrX 4533016 4533354 -158066576 - THE1B LTR MaLR 0 364 1 3084 103 2 7 chrX 4534174 4534601 -158065329 + L1PB1 LINE L1 5727 6151 0 281 292 21 21 chrX 4534751 4534847 -158065083 - MER5B DNA MER1_type -22 156 61 209 342 118 56 chrX 4535022 4535183 -158064747 - MER5A DNA MER1_type -9 180 10 907 253 78 32 chrX 4535474 4535948 -158063982 - L1ME3 LINE L1 -2 6160 5665 27 29 0 0 chrX 4536007 4536041 -158063889 + AT_rich Low_complexity Low_complexity 1 34 0 225 300 0 12 chrX 4536044 4536124 -158063806 + CT-rich Low_complexity Low_complexity 1 79 0 512 255 75 45 chrX 4536180 4536447 -158063483 - L1MCc LINE L1 -3319 3622 3348 288 295 74 38 chrX 4536508 4536975 -158062955 - L1MCc LINE L1 -4600 2341 1808 41 48 0 0 chrX 4537083 4537145 -158062785 + AT_rich Low_complexity Low_complexity 1 62 0 333 348 105 20 chrX 4537156 4537507 -158062423 - L1MCc LINE L1 -4887 1536 1156 290 224 0 0 chrX 4538231 4538289 -158061641 - L1MCc LINE L1 -6347 76 19 305 277 22 7 chrX 4538368 4538505 -158061425 + (TA)n Simple_repeat Simple_repeat 1 139 0 2256 110 0 3 chrX 4538533 4538832 -158061098 - AluSx SINE Alu -14 298 1 311 377 45 36 chrX 4539086 4539423 -158060507 + L1MC4a LINE L1 5566 5905 -1903 1952 164 3 0 chrX 4539429 4539740 -158060190 - AluSx SINE Alu 0 312 1 272 321 0 0 chrX 4540512 4540593 -158059337 + MIR SINE MIR 89 169 -93 459 301 68 0 chrX 4542259 4542422 -158057508 - MLT1D LTR MaLR -264 241 68 1839 113 77 116 chrX 4542465 4542818 -158057112 + Charlie3 DNA MER1_type 1 2712 0 192 77 0 0 chrX 4544397 4544423 -158055507 + (TG)n Simple_repeat Simple_repeat 2 27 0 1525 169 10 60 chrX 4544423 4544724 -158055206 - AluJo SINE Alu -26 286 1 1361 240 116 7 chrX 4544782 4545215 -158054715 - MLT2B1 LTR ERVL -40 480 1 1582 182 30 23 chrX 4545480 4545782 -158054148 - AluJo SINE Alu -8 304 1 1414 236 159 14 chrX 4546138 4546579 -158053351 - MLT1D LTR MaLR 0 505 1 1843 153 10 7 chrX 4546883 4547183 -158052747 - AluSx SINE Alu -11 301 1 953 144 0 11 chrX 4547188 4547368 -158052562 + (TTTC)n Simple_repeat Simple_repeat 3 180 0 396 230 11 6 chrX 4547372 4547550 -158052380 + CT-rich Low_complexity Low_complexity 2 180 0 235 264 50 16 chrX 4548239 4548360 -158051570 + (TGGG)n Simple_repeat Simple_repeat 2 126 0 * 493 251 34 17 chrX 4548272 4548447 -158051483 + G-rich Low_complexity Low_complexity 2 179 0 561 213 0 0 chrX 4548458 4548622 -158051308 + G-rich Low_complexity Low_complexity 1 164 0 205 338 0 0 chrX 4549389 4549457 -158050473 - MIR3 SINE MIR -28 180 113 201 321 46 30 chrX 4551037 4551168 -158048762 + MIR SINE MIR 3 135 -127 2490 195 38 24 chrX 4551221 4551755 -158048175 + L1MB4 LINE L1 5600 6140 -40 28 61 0 0 chrX 4551786 4551835 -158048095 + AT_rich Low_complexity Low_complexity 1 49 0 197 0 0 67 chrX 4552409 4552439 -158047491 + (CCCCCT)n Simple_repeat Simple_repeat 2 29 0 27 29 0 0 chrX 4552576 4552610 -158047320 + GC_rich Low_complexity Low_complexity 1 34 0 273 98 0 0 chrX 4552850 4552891 -158047039 + (CA)n Simple_repeat Simple_repeat 1 41 0 231 238 19 9 chrX 4553050 4553155 -158046775 + (TA)n Simple_repeat Simple_repeat 2 107 0 516 273 61 6 chrX 4553263 4553428 -158046502 + REP3 LTR ERV 389 562 0 1303 187 84 15 chrX 4553709 4553830 -158046100 + AluJo SINE Alu 1 112 -200 270 0 0 0 chrX 4553830 4553860 -158046070 + (TAAA)n Simple_repeat Simple_repeat 2 31 0 1303 187 84 15 chrX 4553860 4554000 -158045930 + AluJo SINE Alu 112 280 -32 259 241 12 48 chrX 4554169 4554252 -158045678 + MLT1I LTR MaLR 292 371 -38 1690 172 29 10 chrX 4554256 4554564 -158045366 + L1MC1 LINE L1 6020 6333 0 287 216 57 34 chrX 4555187 4555275 -158044655 - LTR4 LTR ERV1 -500 96 7 * 587 203 138 91 chrX 4555259 4555551 -158044379 + LTR1B LTR ERV1 487 745 -81 1111 252 86 45 chrX 4555880 4556345 -158043585 + LTR1 LTR ERV1 2 485 -300 580 207 18 65 chrX 4556348 4556565 -158043365 - LTR4 LTR ERV1 0 596 390 280 260 21 62 chrX 4556859 4556955 -158042975 - LTR4 LTR ERV1 -479 117 26 226 255 0 0 chrX 4557563 4557610 -158042320 - L2 LINE L2 -251 3062 3016 436 253 171 82 chrX 4557730 4558133 -158041797 - MLT1H LTR MaLR 0 549 111 722 236 0 11 chrX 4558145 4558319 -158041611 + L1MB7 LINE L1 6005 6176 -8 233 265 39 128 chrX 4560727 4560961 -158038969 - Charlie2a DNA MER1_type -1909 953 741 2938 193 24 18 chrX 4561647 4562192 -158037738 - MER44D DNA MER2_type -1 604 2 512 240 16 8 chrX 4562252 4562373 -158037557 + AluSq SINE Alu 82 203 -110 863 153 0 36 chrX 4562558 4562695 -158037235 - FLAM_C SINE Alu -1 132 1 247 330 94 29 chrX 4562761 4563316 -158036614 + L1ME2 LINE L1 2110 2700 -3446 518 264 127 50 chrX 4563745 4564376 -158035554 + L1ME2 LINE L1 5261 5946 -218 571 263 21 35 chrX 4564483 4564844 -158035086 + L1ME1 LINE L1 5595 6038 -128 276 149 0 0 chrX 4564847 4564894 -158035036 + (TATATG)n Simple_repeat Simple_repeat 2 48 0 1031 146 0 0 chrX 4564914 4565065 -158034865 - AluSg/x SINE Alu -27 283 133 419 226 40 7 chrX 4565068 4565190 -158034740 + L1MA10 LINE L1 6181 6302 -10 799 126 0 14 chrX 4565479 4565622 -158034308 + (GAAA)n Simple_repeat Simple_repeat 2 142 0 21 0 0 0 chrX 4567059 4567080 -158032850 + AT_rich Low_complexity Low_complexity 1 21 0 225 163 0 0 chrX 4567448 4567497 -158032433 + G-rich Low_complexity Low_complexity 1 49 0 204 97 0 0 chrX 4567645 4567676 -158032254 + (G)n Simple_repeat Simple_repeat 1 31 0 366 369 0 0 chrX 4567708 4567884 -158032046 + G-rich Low_complexity Low_complexity 1 176 0 289 292 4 8 chrX 4568788 4568959 -158030971 + C-rich Low_complexity Low_complexity 1 170 0 1363 159 44 63 chrX 4569115 4569492 -158030438 + L1PB4 LINE L1 5791 6155 -1 487 288 87 9 chrX 4570081 4570300 -158029630 - L1MB3 LINE L1 0 6183 5948 676 183 56 16 chrX 4571357 4571483 -158028447 + FLAM_A SINE Alu 2 132 -1 217 314 0 14 chrX 4571721 4571791 -158028139 + (TATATG)n Simple_repeat Simple_repeat 3 71 0 183 129 0 0 chrX 4571803 4571834 -158028096 + (CATA)n Simple_repeat Simple_repeat 2 32 0 258 222 0 0 chrX 4572086 4572140 -158027790 - L1MA5 LINE L1 -198 6102 6049 482 79 13 0 chrX 4572925 4573001 -158026929 + (TC)n Simple_repeat Simple_repeat 1 77 0 347 344 0 6 chrX 4573003 4573211 -158026719 + C-rich Low_complexity Low_complexity 1 206 0 206 279 0 25 chrX 4573319 4573477 -158026453 + C-rich Low_complexity Low_complexity 6 159 0 198 0 0 0 chrX 4573717 4573739 -158026191 + (C)n Simple_repeat Simple_repeat 1 22 0 24 0 0 0 chrX 4574266 4574290 -158025640 + AT_rich Low_complexity Low_complexity 1 24 0 24 0 0 0 chrX 4574846 4574870 -158025060 + GC_rich Low_complexity Low_complexity 1 24 0 863 136 76 27 chrX 4574971 4575155 -158024775 + AluSc SINE Alu 109 301 -8 369 166 31 151 chrX 4575310 4575466 -158024464 + MLT1D LTR MaLR 214 497 -8 284 290 54 65 chrX 4575476 4575662 -158024268 - L2 LINE L2 -1291 2023 1840 182 333 15 15 chrX 4575647 4575713 -158024217 + L2 LINE L2 2577 2642 -672 * 422 310 194 7 chrX 4575722 4575997 -158023933 + L2 LINE L2 2745 3070 -243 207 71 0 71 chrX 4576927 4576969 -158022961 + (CAAAA)n Simple_repeat Simple_repeat 2 40 0 486 257 69 58 chrX 4577330 4577591 -158022339 + MARNA DNA Mariner 316 579 -7 1440 128 88 51 chrX 4577853 4578149 -158021781 - MER44D DNA MER2_type -1 608 32 366 91 0 0 chrX 4578178 4578233 -158021697 + (TC)n Simple_repeat Simple_repeat 2 56 0 1645 184 0 17 chrX 4578817 4579111 -158020819 + AluJo SINE Alu 2 290 -22 796 176 0 0 chrX 4579111 4579230 -158020700 - AluJo/FLAM SINE Alu -191 121 3 318 313 6 22 chrX 4579415 4579594 -158020336 + CT-rich Low_complexity Low_complexity 4 179 0 360 337 0 27 chrX 4579607 4579791 -158020139 + C-rich Low_complexity Low_complexity 1 179 0 1530 188 17 17 chrX 4581066 4581359 -158018571 + AluJo SINE Alu 17 309 -3 2178 103 7 7 chrX 4581381 4581672 -158018258 - AluSq SINE Alu -21 292 2 1281 186 68 15 chrX 4581930 4582194 -158017736 + AluJo SINE Alu 1 278 -34 724 181 129 0 chrX 4582195 4582350 -158017580 + L1PA16 LINE L1 5983 6157 -9 28 29 0 0 chrX 4582350 4582385 -158017545 + AT_rich Low_complexity Low_complexity 1 35 0 26 50 0 0 chrX 4582414 4582454 -158017476 + AT_rich Low_complexity Low_complexity 1 40 0 2161 129 0 0 chrX 4582911 4583213 -158016717 + AluSx SINE Alu 1 302 -10 186 43 0 0 chrX 4583239 4583262 -158016668 + (TTTTG)n Simple_repeat Simple_repeat 3 25 0 183 259 0 0 chrX 4584872 4584930 -158015000 + (CATATA)n Simple_repeat Simple_repeat 3 60 0 1004 323 56 37 chrX 4587050 4587617 -158012313 + L2 LINE L2 1050 1627 -1687 774 330 8 42 chrX 4587701 4588058 -158011872 + MLT1I LTR MaLR 63 407 -2 405 313 96 36 chrX 4588069 4588350 -158011580 + L2 LINE L2 1648 1945 -1369 1559 284 118 26 chrX 4588464 4589291 -158010639 + L2 LINE L2 1943 2693 -620 2534 99 51 17 chrX 4589291 4589643 -158010287 + THE1B LTR MaLR 1 364 0 1559 284 118 26 chrX 4589643 4589912 -158010018 + L2 LINE L2 2693 2936 -377 1447 191 10 37 chrX 4589912 4590211 -158009719 + AluJo SINE Alu 1 291 -21 1559 284 118 26 chrX 4590211 4590371 -158009559 + L2 LINE L2 2936 3313 0 3695 140 2 4 chrX 4591450 4592006 -158007924 + L1PA15 LINE L1 5611 6165 0 218 157 59 20 chrX 4592082 4592133 -158007797 + A-rich Low_complexity Low_complexity 5 57 0 2193 118 0 3 chrX 4593223 4593528 -158006402 + AluSg SINE Alu 1 304 -6 1845 157 0 4 chrX 4593545 4593819 -158006111 + AluJo SINE Alu 1 273 -39 22 56 0 0 chrX 4595687 4595723 -158004207 + AT_rich Low_complexity Low_complexity 1 36 0 2314 88 3 7 chrX 4595727 4596032 -158003898 + AluY SINE Alu 1 304 -7 954 185 0 51 chrX 4597181 4597359 -158002571 + AluJo SINE Alu 1 169 -143 1716 169 55 44 chrX 4597359 4597725 -158002205 - THE1C LTR MaLR 0 375 6 713 168 67 0 chrX 4597730 4597849 -158002081 + AluJo SINE Alu 165 291 -21 281 202 149 21 chrX 4599231 4599325 -158000605 + L1MB3 LINE L1 6077 6182 -1 510 163 92 0 chrX 4600460 4600558 -157999372 + L1MB3 LINE L1 6077 6183 0 180 365 29 19 chrX 4601310 4601414 -157998516 - MIR SINE MIR -50 212 108 212 229 0 0 chrX 4601542 4601590 -157998340 - MIR SINE MIR -66 142 95 226 250 0 0 chrX 4601779 4601823 -157998107 - L2 LINE L2 -12 3260 3217 2577 184 12 5 chrX 4602216 4602645 -157997285 + MSTB1 LTR MaLR 1 432 0 21 36 0 0 chrX 4603914 4603942 -157995988 + AT_rich Low_complexity Low_complexity 1 28 0 440 18 18 0 chrX 4603990 4604047 -157995883 + (TG)n Simple_repeat Simple_repeat 1 58 0 1403 188 73 4 chrX 4604047 4604308 -157995622 - AluJo SINE Alu -33 279 1 293 316 101 40 chrX 4604797 4605075 -157994855 + L2 LINE L2 3019 3313 0 2400 110 26 42 chrX 4605501 4605882 -157994048 + THE1C LTR MaLR 1 375 0 197 350 21 10 chrX 4606016 4606113 -157993817 + MIR SINE MIR 99 196 -66 322 326 144 8 chrX 4606124 4606388 -157993542 + L2 LINE L2 3013 3312 -1 245 250 26 40 chrX 4606379 4606455 -157993475 + MIR SINE MIR 188 262 0 * 1291 162 97 65 chrX 4607556 4607726 -157992204 - AluJo SINE Alu -11 301 117 1816 170 3 0 chrX 4607726 4608015 -157991915 + AluJb SINE Alu 1 290 -22 1291 162 97 65 chrX 4608015 4608134 -157991796 - AluJo SINE Alu -195 117 3 1799 171 0 16 chrX 4608974 4609279 -157990651 + AluJo SINE Alu 2 301 -11 2614 39 7 3 chrX 4609668 4609977 -157989953 - AluY SINE Alu -1 310 1 779 211 46 17 chrX 4610011 4610186 -157989744 + MSTD LTR MaLR 215 394 -2 415 326 136 33 chrX 4610409 4610952 -157988978 - L2 LINE L2 -833 2481 1883 821 191 99 47 chrX 4611322 4611663 -157988267 + MSTD LTR MaLR 3 396 0 1517 192 3 10 chrX 4613361 4613652 -157986278 - AluJo SINE Alu -23 289 1 367 218 20 30 chrX 4613902 4614003 -157985927 - MLT1A1 LTR MaLR -263 102 3 240 276 79 0 chrX 4614020 4614096 -157985834 - L2 LINE L2 -47 3266 3185 408 252 161 13 chrX 4614590 4614745 -157985185 + L1ME1 LINE L1 5355 5532 -634 391 252 85 77 chrX 4614749 4614781 -157985149 + L1ME1 LINE L1 5681 5711 -455 2246 63 47 20 chrX 4614781 4615081 -157984849 - L1PA11 LINE L1 0 6174 5867 391 252 85 77 chrX 4615081 4615296 -157984634 + L1ME1 LINE L1 5711 5927 -239 2300 115 29 3 chrX 4616097 4616445 -157983485 + L1MA3 LINE L1 5947 6303 -2 27 22 0 22 chrX 4616661 4616681 -157983249 + AT_rich Low_complexity Low_complexity 1 20 -24 2064 115 31 3 chrX 4616681 4616967 -157982963 - AluSg SINE Alu -16 294 1 27 22 0 22 chrX 4616967 4616991 -157982939 + AT_rich Low_complexity Low_complexity 20 44 0 32 43 0 0 chrX 4617033 4617079 -157982851 + AT_rich Low_complexity Low_complexity 1 46 0 214 152 55 18 chrX 4617082 4617247 -157982683 + (TATAA)n Simple_repeat Simple_repeat 4 174 0 346 191 52 17 chrX 4617273 4617446 -157982484 + (TATAA)n Simple_repeat Simple_repeat 1 179 0 237 166 70 0 chrX 4617457 4617614 -157982316 + (TATAA)n Simple_repeat Simple_repeat 5 172 0 21 57 0 0 chrX 4617765 4617800 -157982130 + AT_rich Low_complexity Low_complexity 1 35 0 204 125 0 0 chrX 4617917 4617949 -157981981 + (GA)n Simple_repeat Simple_repeat 1 32 0 3525 86 27 5 chrX 4618422 4618865 -157981065 + MLT2A2 LTR ERVL 1 453 0 233 265 12 24 chrX 4618971 4619027 -157980903 + (CATATA)n Simple_repeat Simple_repeat 2 58 -25 2593 121 14 16 chrX 4619027 4619392 -157980538 + THE1B LTR MaLR 1 364 0 233 265 12 24 chrX 4619392 4619418 -157980512 + (CATATA)n Simple_repeat Simple_repeat 58 83 0 828 78 95 0 chrX 4621973 4621996 -157977934 - L1MA2 LINE L1 -6 6298 6279 201 74 0 0 chrX 4621996 4622023 -157977907 + (TA)n Simple_repeat Simple_repeat 1 27 0 828 78 95 0 chrX 4622023 4622115 -157977815 - L1MA2 LINE L1 -25 6279 6172 447 256 8 8 chrX 4622119 4622240 -157977690 + Charlie4a DNA MER1_type 14 134 -374 384 256 40 24 chrX 4622251 4622376 -157977554 + Charlie4a DNA MER1_type 209 335 -173 832 173 0 7 chrX 4622400 4622539 -157977391 - FLAM_C SINE Alu 0 143 6 295 257 44 37 chrX 4622556 4622692 -157977238 + Charlie4a DNA MER1_type 352 488 -20 1874 181 7 0 chrX 4622937 4623246 -157976684 + AluJb SINE Alu 1 311 -1 1248 155 17 26 chrX 4624687 4624919 -157975011 - AluJo SINE Alu -82 230 1 900 155 0 0 chrX 4624919 4625048 -157974882 - AluJb SINE Alu -17 295 167 985 137 0 10 chrX 4626158 4626406 -157973524 - AluJb SINE Alu -16 296 1 620 284 12 12 chrX 4626450 4626619 -157973311 + MER5B DNA MER1_type 4 172 -6 316 288 33 79 chrX 4626693 4626933 -157972997 - HAL1 LINE L1 0 2507 2279 1839 183 0 0 chrX 4626976 4627271 -157972659 - AluJb SINE Alu -17 295 1 866 297 82 35 chrX 4627592 4627916 -157972014 - HAL1 LINE L1 -711 1796 1434 2624 118 64 10 chrX 4627916 4628322 -157971608 + MSTA LTR MaLR 1 428 0 866 297 82 35 chrX 4628322 4628560 -157971370 - HAL1 LINE L1 -1073 1434 1208 2870 126 29 6 chrX 4629407 4629885 -157970045 + MER39B LTR ERV1 1 489 -164 5047 129 15 44 chrX 4629894 4629923 -157970007 + L1PA16 LINE L1 5303 5331 -835 1883 128 14 14 chrX 4629923 4630246 -157969684 + AluSx SINE Alu 1 323 0 5047 129 15 44 chrX 4630246 4631086 -157968844 + L1PA16 LINE L1 5331 6148 -18 790 174 38 38 chrX 4631086 4631270 -157968660 + MER39B LTR ERV1 470 653 0 2117 164 96 19 chrX 4631757 4632173 -157967757 + LTR29 LTR ERV1 175 622 0 710 184 0 70 chrX 4632184 4632342 -157967588 + LTR29-int LTR ERV1 10 156 -6175 335 191 16 0 chrX 4632342 4632405 -157967525 + LTR29 LTR ERV1 559 622 0 578 261 44 54 chrX 4632440 4632533 -157967397 + MIR SINE MIR 61 153 -109 1658 205 84 70 chrX 4632533 4633030 -157966900 + MLT1D LTR MaLR 1 504 -1 578 261 44 54 chrX 4633030 4633139 -157966791 + MIR SINE MIR 153 261 -1 2245 112 0 22 chrX 4633300 4633613 -157966317 - AluSx SINE Alu -6 306 1 2325 143 28 3 chrX 4633921 4634277 -157965653 + MLT1A1 LTR MaLR 1 365 0 1363 172 62 44 chrX 4634969 4635242 -157964688 + AluJo SINE Alu 1 278 -34 270 0 0 0 chrX 4635247 4635277 -157964653 + (GGAA)n Simple_repeat Simple_repeat 3 32 0 2415 138 40 8 chrX 4636364 4636763 -157963167 + MSTA LTR MaLR 17 428 0 29 0 0 0 chrX 4637537 4637566 -157962364 + AT_rich Low_complexity Low_complexity 1 29 0 1897 152 176 16 chrX 4637573 4637942 -157961988 - MSTC LTR MaLR 0 428 1 1398 190 19 16 chrX 4638653 4639077 -157960853 + MLT1D LTR MaLR 7 485 -20 2414 72 3 3 chrX 4639413 4639719 -157960211 + AluY SINE Alu 1 306 -5 579 295 65 10 chrX 4642310 4642510 -157957420 - MER58A DNA MER1_type -9 215 5 1306 54 18 6 chrX 4643124 4643292 -157956638 - AluY SINE Alu -53 258 89 435 188 12 0 chrX 4643417 4643497 -157956433 - AluSg/x SINE Alu -57 253 173 227 135 0 0 chrX 4643497 4643534 -157956396 - Alu SINE Alu -90 213 177 * 235 158 0 0 chrX 4643526 4643564 -157956366 - Alu SINE Alu -80 220 183 1606 94 0 0 chrX 4643564 4643766 -157956164 - AluSx SINE Alu -90 222 21 259 285 183 38 chrX 4644080 4644452 -157955478 + L2 LINE L2 943 1368 -1946 259 210 97 0 chrX 4644595 4644657 -157955273 + L2 LINE L2 1934 2001 -1313 1615 318 127 20 chrX 4644980 4646182 -157953748 + L2 LINE L2 1975 3311 -2 387 288 159 0 chrX 4646541 4646704 -157953226 - Charlie8 DNA MER1_type -2137 280 92 683 195 57 63 chrX 4646983 4647142 -157952788 + AluJb SINE Alu 127 284 -28 299 275 0 44 chrX 4647245 4647336 -157952594 + L2 LINE L2 3185 3271 -1 479 266 34 17 chrX 4647436 4647613 -157952317 - MIR SINE MIR -31 231 52 21 36 0 0 chrX 4648063 4648091 -157951839 + AT_rich Low_complexity Low_complexity 1 28 0 336 102 0 0 chrX 4648091 4648140 -157951790 + (CA)n Simple_repeat Simple_repeat 2 50 0 2216 115 16 0 chrX 4649188 4649492 -157950438 - AluSx SINE Alu -2 310 2 26 0 0 0 chrX 4649631 4649657 -157950273 + AT_rich Low_complexity Low_complexity 1 26 0 441 342 76 49 chrX 4649935 4650343 -157949587 + HAL1b LINE L1 115 1617 -816 208 238 8 57 chrX 4650795 4650832 -157949098 + A-rich Low_complexity Low_complexity 4 41 -78 25 0 0 0 chrX 4650832 4650857 -157949073 + AT_rich Low_complexity Low_complexity 1 25 0 208 238 8 57 chrX 4650857 4650917 -157949013 + A-rich Low_complexity Low_complexity 41 119 0 28 48 0 0 chrX 4651001 4651043 -157948887 + AT_rich Low_complexity Low_complexity 1 42 0 244 155 42 28 chrX 4651188 4651259 -157948671 + (CATATA)n Simple_repeat Simple_repeat 3 74 0 2039 118 0 0 chrX 4651359 4651641 -157948289 + AluSx SINE Alu 1 280 -32 226 207 0 35 chrX 4651751 4651809 -157948121 + (TATATG)n Simple_repeat Simple_repeat 4 59 0 499 275 39 30 chrX 4652049 4652387 -157947543 + L1M4 LINE L1 2940 3280 -2866 21 89 0 0 chrX 4652468 4652524 -157947406 + AT_rich Low_complexity Low_complexity 1 56 0 471 340 70 85 chrX 4652596 4653537 -157946393 + L1M4 LINE L1 3440 4372 -1774 337 242 31 39 chrX 4654014 4654142 -157945788 + LTR33 LTR ERVL 94 220 -301 2199 109 10 0 chrX 4654294 4654587 -157945343 + AluSg SINE Alu 1 296 -14 249 277 99 21 chrX 4654632 4654773 -157945157 + L1M4 LINE L1 4942 5093 -1053 527 176 7 110 chrX 4654942 4655078 -157944852 - FLAM_A SINE Alu -11 122 1 235 293 38 63 chrX 4655392 4655513 -157944417 - L1ME LINE L1 -260 5861 5747 1500 141 41 19 chrX 4655513 4655783 -157944147 + L1PA16 LINE L1 5881 6156 -10 235 293 38 63 chrX 4655783 4655900 -157944030 - L1ME LINE L1 -374 5747 5629 1816 163 3 16 chrX 4656844 4657150 -157942780 - AluJo SINE Alu -10 302 1 672 221 67 39 chrX 4658860 4659068 -157940862 - MER20 DNA MER1_type -5 214 1 740 162 54 18 chrX 4659117 4659284 -157940646 - MER20 DNA MER1_type 0 219 47 977 220 23 19 chrX 4659356 4659570 -157940360 - MER20 DNA MER1_type -4 215 1 197 266 65 81 chrX 4659810 4659934 -157939996 - L2 LINE L2 -868 2446 2325 783 192 0 0 chrX 4660026 4660203 -157939727 + (CAT)n Simple_repeat Simple_repeat 2 178 0 389 286 56 16 chrX 4660563 4660689 -157939241 - MER5A DNA MER1_type -11 178 48 946 237 27 5 chrX 4660799 4661018 -157938912 - MER58A DNA MER1_type 0 224 1 224 292 0 15 chrX 4661520 4661585 -157938345 + L2 LINE L2 3250 3313 0 716 121 0 121 chrX 4663033 4663182 -157936748 - FRAM SINE Alu -22 154 24 1501 262 82 35 chrX 4663221 4663733 -157936197 - MLT1E LTR MaLR -3 590 55 1299 242 77 41 chrX 4663979 4664421 -157935509 - MLT1C LTR MaLR -9 458 1 25 31 0 0 chrX 4665108 4665140 -157934790 + AT_rich Low_complexity Low_complexity 1 32 0 216 143 0 0 chrX 4665669 4665711 -157934219 + (TG)n Simple_repeat Simple_repeat 1 42 0 515 273 22 57 chrX 4665891 4666044 -157933886 - MER20 DNA MER1_type 0 219 75 4128 147 1 0 chrX 4666044 4666710 -157933220 - L1PB4 LINE L1 -12 6144 5478 515 273 22 57 chrX 4666710 4666783 -157933147 - MER20 DNA MER1_type -144 75 1 21 0 0 0 chrX 4667834 4667855 -157932075 + AT_rich Low_complexity Low_complexity 1 21 0 234 62 0 0 chrX 4668349 4668381 -157931549 + (TG)n Simple_repeat Simple_repeat 1 32 0 1361 240 85 9 chrX 4668525 4668959 -157930971 + MLT1C LTR MaLR 1 467 0 23 54 0 0 chrX 4668972 4669009 -157930921 + AT_rich Low_complexity Low_complexity 1 37 0 364 220 11 0 chrX 4669019 4669110 -157930820 - L1MA9 LINE L1 -34 6278 6187 230 200 77 15 chrX 4669337 4669402 -157930528 + MIR3 SINE MIR 115 183 -25 184 293 104 9 chrX 4670039 4670145 -157929785 - L2 LINE L2 -21 3251 3136 643 229 133 0 chrX 4670631 4670797 -157929133 - MER5A DNA MER1_type -1 188 1 213 238 0 0 chrX 4670991 4671033 -157928897 - L2 LINE L2 -11 3302 3261 199 354 77 39 chrX 4671293 4671423 -157928507 - L2 LINE L2 -1 3271 3137 839 273 83 29 chrX 4671540 4672070 -157927860 - MLT1F1 LTR MaLR 0 567 2 1997 152 10 0 chrX 4672795 4673098 -157926832 + AluJb SINE Alu 5 310 -2 351 206 109 91 chrX 4674306 4674426 -157925504 + MIR SINE MIR 67 192 -70 1790 174 43 0 chrX 4674426 4674549 -157925381 + AluJo SINE Alu 1 117 -195 183 42 0 0 chrX 4674549 4674573 -157925357 + (TAA)n Simple_repeat Simple_repeat 2 25 0 1790 174 43 0 chrX 4674573 4674748 -157925182 + AluJo SINE Alu 117 312 0 351 206 109 91 chrX 4674748 4674802 -157925128 + MIR SINE MIR 192 244 -18 186 397 65 9 chrX 4674878 4675092 -157924838 + L2 LINE L2 2750 2975 -339 2044 131 3 3 chrX 4677347 4677644 -157922286 - AluJo SINE Alu -15 297 1 1511 181 0 36 chrX 4677854 4678131 -157921799 + AluJb SINE Alu 1 267 -45 2535 46 0 3 chrX 4678844 4679147 -157920783 - AluY SINE Alu 0 311 10 1455 201 7 31 chrX 4679329 4679622 -157920308 + AluJo SINE Alu 1 286 -26 28 29 0 0 chrX 4679623 4679658 -157920272 + AT_rich Low_complexity Low_complexity 1 35 0 483 314 53 0 chrX 4680068 4680237 -157919693 + MIR SINE MIR 37 214 -48 1059 99 0 0 chrX 4680286 4680438 -157919492 + L1PA8 LINE L1 6020 6171 -1 394 160 13 0 chrX 4681153 4681228 -157918702 - MADE1 DNA Mariner -4 76 1 1061 151 0 6 chrX 4681238 4681397 -157918533 - AluJb SINE Alu -25 287 130 2276 61 41 0 chrX 4681992 4682286 -157917644 - AluY SINE Alu -5 306 1 181 245 80 123 chrX 4682875 4682998 -157916932 + MIR SINE MIR 71 187 -75 1986 143 10 0 chrX 4682998 4683291 -157916639 + AluJo SINE Alu 1 296 -16 181 245 80 123 chrX 4683291 4683330 -157916600 + MIR SINE MIR 187 226 -36 2084 130 0 0 chrX 4683554 4683838 -157916092 - AluSx SINE Alu -17 295 12 1152 105 0 0 chrX 4683849 4683992 -157915938 - AluSq/x SINE Alu -169 144 2 426 20 0 0 chrX 4687669 4687720 -157912210 + (CA)n Simple_repeat Simple_repeat 1 51 0 1635 193 3 3 chrX 4687794 4688090 -157911840 - AluJb SINE Alu -8 304 9 2147 111 23 7 chrX 4688762 4689069 -157910861 + AluSx SINE Alu 1 312 0 307 306 175 22 chrX 4690338 4690521 -157909409 - MIR SINE MIR -7 255 45 733 212 20 0 chrX 4690927 4691073 -157908857 + AluJo SINE Alu 3 151 -161 733 169 0 0 chrX 4691202 4691326 -157908604 + AluJo SINE Alu 156 279 -33 22 35 0 0 chrX 4691350 4691379 -157908551 + AT_rich Low_complexity Low_complexity 1 29 0 1018 197 96 60 chrX 4691620 4692046 -157907884 - MLT1D LTR MaLR -4 501 73 214 280 20 0 chrX 4692242 4692292 -157907638 + L2 LINE L2 3248 3298 -15 1778 183 27 0 chrX 4693062 4693362 -157906568 + AluJo SINE Alu 1 308 -4 2052 122 0 17 chrX 4694013 4694309 -157905621 - AluSx SINE Alu -17 295 5 2419 92 0 0 chrX 4694882 4695187 -157904743 - AluSc SINE Alu -4 305 1 24 0 0 0 chrX 4697239 4697263 -157902667 + AT_rich Low_complexity Low_complexity 1 24 0 1545 172 52 7 chrX 4698320 4698610 -157901320 - AluJo SINE Alu -8 304 2 239 309 12 12 chrX 4698620 4698701 -157901229 + L2 LINE L2 3227 3307 -6 211 196 87 0 chrX 4699030 4699076 -157900854 + MIR SINE MIR 92 141 -67 193 235 78 0 chrX 4699993 4700044 -157899886 + L2 LINE L2 3201 3255 -17 833 261 23 5 chrX 4700403 4700618 -157899312 - MER20 DNA MER1_type 0 219 1 21 0 0 0 chrX 4701045 4701066 -157898864 + AT_rich Low_complexity Low_complexity 1 21 0 4440 129 13 16 chrX 4702183 4702602 -157897328 + L1PA16 LINE L1 5408 5826 -340 2599 48 3 0 chrX 4702602 4702912 -157897018 + AluY SINE Alu 1 311 0 4440 129 13 16 chrX 4702912 4703244 -157896686 + L1PA16 LINE L1 5826 6157 -9 272 338 15 15 chrX 4703692 4703825 -157896105 + (CATATA)n Simple_repeat Simple_repeat 6 138 0 364 249 106 53 chrX 4703962 4704151 -157895779 - L1ME LINE L1 -415 5706 5508 237 83 0 0 chrX 4704201 4704237 -157895693 + (TAAAA)n Simple_repeat Simple_repeat 4 39 0 260 296 163 52 chrX 4705241 4705376 -157894554 + L2 LINE L2 3123 3272 0 203 317 0 0 chrX 4705842 4705902 -157894028 + L2 LINE L2 3249 3308 -5 211 271 122 19 chrX 4706259 4706366 -157893564 + MIR SINE MIR 28 145 -63 23 86 0 0 chrX 4706643 4706701 -157893229 + AT_rich Low_complexity Low_complexity 1 58 0 952 193 14 40 chrX 4707134 4707357 -157892573 + MER20 DNA MER1_type 3 219 0 183 222 0 0 chrX 4707379 4707424 -157892506 + GA-rich Low_complexity Low_complexity 4 48 0 * 286 130 0 58 chrX 4707417 4707486 -157892444 + (GGAA)n Simple_repeat Simple_repeat 1 65 0 204 284 14 14 chrX 4707496 4707570 -157892360 + GA-rich Low_complexity Low_complexity 2 75 0 190 340 47 0 chrX 4707599 4707705 -157892225 - MIR SINE MIR -62 200 90 272 220 31 6 chrX 4708274 4708436 -157891494 + CT-rich Low_complexity Low_complexity 1 166 0 412 191 9 18 chrX 4708646 4708756 -157891174 + CT-rich Low_complexity Low_complexity 4 112 0 351 282 40 24 chrX 4709181 4709305 -157890625 + L1MEd LINE L1 1004 1129 -5401 440 282 74 45 chrX 4709389 4709756 -157890174 + L1MEd LINE L1 1293 1649 -4881 231 272 39 19 chrX 4709921 4710024 -157889906 + L1MEd LINE L1 1865 1969 -4571 396 295 48 39 chrX 4710855 4711100 -157888830 + L1MEd LINE L1 3336 3577 -2963 253 293 75 0 chrX 4711236 4711342 -157888588 + MER81 DNA DNA 1 114 0 462 36 0 0 chrX 4711813 4711869 -157888061 + (TG)n Simple_repeat Simple_repeat 2 57 0 676 222 116 25 chrX 4712375 4712573 -157887357 + MER20 DNA MER1_type 4 219 0 270 0 0 0 chrX 4713665 4713695 -157886235 + (TG)n Simple_repeat Simple_repeat 2 31 0 451 276 63 9 chrX 4713731 4713952 -157885978 - L1M4 LINE L1 -3597 2549 2317 1669 144 16 53 chrX 4714730 4715050 -157884880 + AluJo SINE Alu 5 312 0 589 214 231 6 chrX 4715662 4715835 -157884095 - MER20 DNA MER1_type -1 218 7 286 354 16 8 chrX 4715838 4715965 -157883965 + L2 LINE L2 3186 3313 0 228 190 17 52 chrX 4716326 4716384 -157883546 + L2 LINE L2 3257 3312 -1 3488 103 16 4 chrX 4716584 4717089 -157882841 - MER9 LTR ERVK 0 511 1 227 245 187 36 chrX 4717440 4717579 -157882351 - L2 LINE L2 0 3313 3154 22 56 0 0 chrX 4717766 4717802 -157882128 + AT_rich Low_complexity Low_complexity 1 36 0 198 167 0 0 chrX 4717943 4717979 -157881951 + (TAGA)n Simple_repeat Simple_repeat 2 37 0 1465 143 17 28 chrX 4717988 4718041 -157881889 + MLT1A1 LTR MaLR 1 53 -321 4171 99 9 41 chrX 4718041 4718533 -157881397 + L1MA2 LINE L1 5649 6115 -189 2368 78 0 3 chrX 4718533 4718828 -157881102 - AluY SINE Alu -17 294 1 4171 99 9 41 chrX 4718828 4719013 -157880917 + L1MA2 LINE L1 6115 6304 0 1465 143 17 28 chrX 4719013 4719270 -157880660 + MLT1A1 LTR MaLR 53 292 -82 529 170 7 7 chrX 4719354 4719501 -157880429 + (CATA)n Simple_repeat Simple_repeat 2 148 0 210 167 64 26 chrX 4719502 4719580 -157880350 + (TAGA)n Simple_repeat Simple_repeat 2 82 0 214 222 32 16 chrX 4720699 4720762 -157879168 + (TG)n Simple_repeat Simple_repeat 1 64 0 180 0 0 0 chrX 4721246 4721266 -157878664 + (TC)n Simple_repeat Simple_repeat 2 21 0 1832 136 0 0 chrX 4721785 4722036 -157877894 - AluSx SINE Alu -18 294 44 653 228 91 9 chrX 4722770 4722989 -157876941 - MER46C DNA MER2_type -101 237 1 1781 147 6 26 chrX 4723176 4723516 -157876414 - L1MC1 LINE L1 -260 6073 5741 2356 179 7 2 chrX 4724261 4724718 -157875212 - L1PA16 LINE L1 0 6166 5708 24 0 0 0 chrX 4725049 4725073 -157874857 + AT_rich Low_complexity Low_complexity 1 24 0 1795 146 28 17 chrX 4725111 4725222 -157874708 + AluJb SINE Alu 11 119 -193 207 0 0 0 chrX 4725222 4725245 -157874685 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 1795 146 28 17 chrX 4725245 4725421 -157874509 + AluJb SINE Alu 119 301 -11 216 390 20 30 chrX 4725496 4725596 -157874334 + L2 LINE L2 2979 3077 -195 1707 185 3 19 chrX 4725698 4726006 -157873924 + AluJo SINE Alu 1 303 -9 21 0 0 0 chrX 4727260 4727281 -157872649 + AT_rich Low_complexity Low_complexity 1 21 0 252 59 0 0 chrX 4727720 4727754 -157872176 + (CCCTAA)n Simple_repeat Simple_repeat 3 36 0 1208 163 154 86 chrX 4727922 4728175 -157871755 + MLT1A1 LTR MaLR 4 287 -78 1625 192 0 24 chrX 4728175 4728466 -157871464 + AluJo SINE Alu 1 284 -28 1208 163 154 86 chrX 4728466 4728549 -157871381 + MLT1A1 LTR MaLR 287 363 -2 396 227 13 53 chrX 4728877 4729027 -157870903 + L1PA16 LINE L1 6007 6150 -16 918 178 11 0 chrX 4729097 4729282 -157870648 + L1MC3 LINE L1 6951 7137 -648 1307 96 0 11 chrX 4729288 4729466 -157870464 - AluSg/x SINE Alu 0 312 137 2383 211 52 11 chrX 4729466 4730097 -157869833 + L1MC3 LINE L1 7129 7785 0 2138 123 3 16 chrX 4730523 4730839 -157869091 - AluSx SINE Alu 0 312 1 200 205 0 0 chrX 4731441 4731480 -157868450 + (CATG)n Simple_repeat Simple_repeat 2 40 0 189 195 0 0 chrX 4731487 4731528 -157868402 + (TG)n Simple_repeat Simple_repeat 2 42 0 343 419 16 0 chrX 4732566 4732750 -157867180 + L3 LINE CR1 1380 1566 -11 1094 15 8 0 chrX 4733282 4733413 -157866517 - L1PA5 LINE L1 0 6154 6023 7283 41 0 0 chrX 4733448 4734639 -157865291 - L1PA4 LINE L1 -3 6152 4962 459 0 0 0 chrX 4735124 4735175 -157864755 + (CA)n Simple_repeat Simple_repeat 2 52 0 180 0 0 0 chrX 4735174 4735194 -157864736 + (GA)n Simple_repeat Simple_repeat 2 21 0 * 251 219 41 41 chrX 4738290 4738363 -157861567 + LTR16C LTR ERVL 418 490 -1 1585 182 10 40 chrX 4738816 4739113 -157860817 + AluJo SINE Alu 1 288 -24 2042 222 13 33 chrX 4740121 4740643 -157859287 - MLT1A1-int LTR MaLR -1223 512 1 1790 169 11 55 chrX 4740643 4741022 -157858908 - MLT1A1 LTR MaLR 0 365 4 916 9 0 9 chrX 4742477 4742652 -157857278 + AluY SINE Alu 172 345 0 247 290 0 0 chrX 4746566 4746635 -157853295 + CT-rich Low_complexity Low_complexity 2 70 0 272 48 24 0 chrX 4746637 4746679 -157853251 + (CA)n Simple_repeat Simple_repeat 2 44 0 296 149 53 9 chrX 4747396 4747510 -157852420 + (TA)n Simple_repeat Simple_repeat 2 120 0 480 89 0 0 chrX 4748960 4749039 -157850891 + (GA)n Simple_repeat Simple_repeat 2 80 0 1798 140 3 40 chrX 4749103 4749403 -157850527 + AluJo SINE Alu 6 294 -18 1243 172 4 0 chrX 4750015 4750248 -157849682 - L1MA3 LINE L1 -1 6304 6071 1628 186 7 17 chrX 4750248 4750543 -157849387 - AluJo SINE Alu -20 292 1 600 176 26 46 chrX 4750813 4750966 -157848964 + MLT2C1 LTR ERVL 193 342 -55 455 308 108 29 chrX 4751202 4751517 -157848413 + L2 LINE L2 1552 1891 -1423 1446 181 61 3 chrX 4751782 4752108 -157847822 + MLT1A1 LTR MaLR 21 365 0 881 263 64 0 chrX 4753154 4753451 -157846479 - MER33 DNA MER1_type -8 316 1 468 291 103 56 chrX 4754444 4754912 -157845018 + MLT1H1 LTR MaLR 66 555 0 4365 118 3 6 chrX 4756289 4756948 -157842982 + L1PA13 LINE L1 5496 6152 -11 679 258 5 21 chrX 4757371 4757561 -157842369 + MER20 DNA MER1_type 31 217 -2 1167 107 31 0 chrX 4757761 4757957 -157841973 - L1PA13 LINE L1 -69 6094 5893 291 302 101 27 chrX 4758655 4758804 -157841126 - MIR SINE MIR -71 191 32 1589 197 9 22 chrX 4758949 4759264 -157840666 - AluJo SINE Alu -1 311 1 1053 231 73 105 chrX 4760107 4760752 -157839178 - MLT1E2 LTR MaLR 0 626 1 258 156 0 0 chrX 4760905 4760950 -157838980 + C-rich Low_complexity Low_complexity 1 45 0 1522 152 134 0 chrX 4760950 4761219 -157838711 - AluSx SINE Alu -6 306 2 1843 183 0 3 chrX 4761344 4761656 -157838274 - AluJo SINE Alu -1 311 1 468 0 0 0 chrX 4762396 4762448 -157837482 + (CA)n Simple_repeat Simple_repeat 2 53 0 1747 163 6 41 chrX 4762474 4762794 -157837136 - AluJo SINE Alu -3 309 1 186 171 0 0 chrX 4764225 4764266 -157835664 + (TG)n Simple_repeat Simple_repeat 2 42 0 369 75 0 0 chrX 4764634 4764687 -157835243 + (CA)n Simple_repeat Simple_repeat 2 54 0 22 0 0 0 chrX 4764765 4764787 -157835143 + AT_rich Low_complexity Low_complexity 1 22 0 202 304 14 0 chrX 4765544 4765613 -157834317 + (CCCGAA)n Simple_repeat Simple_repeat 6 75 0 248 297 17 114 chrX 4765894 4766069 -157833861 - L2 LINE L2 -5 3308 3151 1667 139 12 8 chrX 4766282 4766540 -157833390 + AluJo SINE Alu 34 292 -20 297 317 96 28 chrX 4767742 4768136 -157831794 - L1ME3A LINE L1 -229 5941 5521 228 267 56 11 chrX 4768166 4768256 -157831674 - L1ME3A LINE L1 -2026 4120 4027 308 331 158 19 chrX 4768293 4768716 -157831214 - L1ME3A LINE L1 -2157 3989 3508 633 266 0 33 chrX 4768882 4769066 -157830864 - MLT1E2 LTR MaLR -18 608 431 1295 140 4 44 chrX 4769344 4769594 -157830336 + L1MA9 LINE L1 5789 6028 -284 423 342 16 0 chrX 4770517 4770710 -157829220 - HAL1 LINE L1 -921 1586 1391 299 358 22 17 chrX 4773112 4773291 -157826639 - MER5A DNA MER1_type -9 180 1 975 215 51 78 chrX 4773492 4773947 -157825983 + MER39 LTR ERV1 68 565 0 213 121 0 0 chrX 4774082 4774115 -157825815 + (TA)n Simple_repeat Simple_repeat 2 34 0 2014 94 33 14 chrX 4774163 4774438 -157825492 - AluSx SINE Alu -32 280 1 23 33 0 0 chrX 4774477 4774507 -157825423 + AT_rich Low_complexity Low_complexity 1 30 0 883 144 0 8 chrX 4774636 4774768 -157825162 + FLAM_A SINE Alu 2 132 -1 184 365 50 25 chrX 4775686 4775845 -157824085 - L2 LINE L2 -844 2470 2308 183 80 0 0 chrX 4776561 4776586 -157823344 + (CATA)n Simple_repeat Simple_repeat 3 27 0 434 33 17 0 chrX 4776636 4776696 -157823234 + (TAGA)n Simple_repeat Simple_repeat 2 62 0 330 26 0 0 chrX 4776792 4776831 -157823099 + (TG)n Simple_repeat Simple_repeat 1 39 0 560 278 90 75 chrX 4776896 4777261 -157822669 + L1MC5 LINE L1 6820 7193 -768 2129 145 24 19 chrX 4777261 4777634 -157822296 - THE1C LTR MaLR 0 375 1 560 278 90 75 chrX 4777634 4777656 -157822274 + L1MC5 LINE L1 7193 7213 -748 816 65 0 0 chrX 4777683 4777790 -157822140 + (TA)n Simple_repeat Simple_repeat 1 107 0 208 310 17 0 chrX 4778675 4778733 -157821197 + MIR SINE MIR 30 88 -120 218 320 10 31 chrX 4779717 4779814 -157820116 + L2 LINE L2 3173 3267 -5 2256 90 7 0 chrX 4780484 4780784 -157819146 - AluY SINE Alu -9 302 1 184 250 19 0 chrX 4781035 4781087 -157818843 + L2 LINE L2 1703 1755 -1559 309 89 0 0 chrX 4782218 4782263 -157817667 + (TG)n Simple_repeat Simple_repeat 1 45 0 1269 161 0 18 chrX 4782379 4782603 -157817327 - AluJo SINE Alu -52 260 41 354 143 0 0 chrX 4782710 4782773 -157817157 + (TG)n Simple_repeat Simple_repeat 2 64 0 775 130 0 9 chrX 4782858 4782973 -157816957 + FRAM SINE Alu 42 155 -21 236 191 106 21 chrX 4783215 4783309 -157816621 + L1MC5 LINE L1 7452 7553 -408 2124 122 3 0 chrX 4784453 4784748 -157815182 + AluSx SINE Alu 1 296 -16 2174 243 75 13 chrX 4785363 4786128 -157813802 + L1MC3 LINE L1 6974 7785 0 766 158 8 0 chrX 4787104 4787231 -157812699 + FLAM_C SINE Alu 2 129 -4 2329 84 7 0 chrX 4787758 4788054 -157811876 + AluSp SINE Alu 1 298 -15 341 262 68 0 chrX 4788060 4788163 -157811767 + MIR3 SINE MIR 94 203 -5 2078 107 57 0 chrX 4788368 4788648 -157811282 - AluSx SINE Alu -14 298 3 1400 199 34 38 chrX 4789281 4789572 -157810358 - AluJo SINE Alu -22 290 1 185 180 20 0 chrX 4789675 4789725 -157810205 + (TATATG)n Simple_repeat Simple_repeat 2 52 0 21 36 0 0 chrX 4789860 4789888 -157810042 + AT_rich Low_complexity Low_complexity 1 28 0 315 0 0 0 chrX 4790965 4791000 -157808930 + (CA)n Simple_repeat Simple_repeat 1 35 0 203 224 30 0 chrX 4791502 4791569 -157808361 + (TA)n Simple_repeat Simple_repeat 2 70 0 309 183 0 0 chrX 4791606 4791666 -157808264 + (TA)n Simple_repeat Simple_repeat 1 60 0 929 158 0 16 chrX 4791794 4791977 -157807953 + CT-rich Low_complexity Low_complexity 1 180 0 844 168 6 6 chrX 4791996 4792175 -157807755 + CT-rich Low_complexity Low_complexity 1 179 0 240 318 68 11 chrX 4793334 4793422 -157806508 - L2 LINE L2 -291 2981 2889 23 33 0 0 chrX 4794067 4794097 -157805833 + AT_rich Low_complexity Low_complexity 1 30 0 30 45 0 0 chrX 4795235 4795279 -157804651 + AT_rich Low_complexity Low_complexity 1 44 0 2057 126 7 0 chrX 4795371 4795656 -157804274 + AluSx SINE Alu 1 287 -25 219 114 0 0 chrX 4796401 4796436 -157803494 + (TG)n Simple_repeat Simple_repeat 2 36 0 1869 243 50 24 chrX 4796454 4797157 -157802773 - L1M4 LINE L1 -1304 4842 4122 340 295 18 36 chrX 4797685 4797797 -157802133 - L1MC4 LINE L1 -1319 6723 6614 1636 249 96 41 chrX 4797800 4798012 -157801918 - MLT2F LTR ERVL -44 619 420 1834 190 22 3 chrX 4798012 4798370 -157801560 + MLT1A1 LTR MaLR 1 365 0 1636 249 96 41 chrX 4798370 4798740 -157801190 - MLT2F LTR ERVL -243 420 5 542 299 19 52 chrX 4799687 4799813 -157800117 - MIR SINE MIR -22 240 122 2326 93 0 13 chrX 4799813 4800123 -157799807 + AluSc SINE Alu 1 306 -3 542 299 19 52 chrX 4800123 4800207 -157799723 - MIR SINE MIR -140 122 37 230 226 139 26 chrX 4800444 4800559 -157799371 + L1MEc LINE L1 44 171 -6225 978 246 139 3 chrX 4800804 4801121 -157798809 - MLT1A1 LTR MaLR -5 360 1 2397 113 52 0 chrX 4801586 4801932 -157797998 - THE1B LTR MaLR 0 364 1 1679 180 34 55 chrX 4802145 4802583 -157797347 + L1MC3 LINE L1 6673 7101 -684 1825 118 33 13 chrX 4802607 4802911 -157797019 + MSTA LTR MaLR 118 427 -1 1210 137 49 0 chrX 4802912 4803116 -157796814 + L1MC3 LINE L1 7099 7312 -473 1719 151 3 34 chrX 4803450 4803748 -157796182 + AluJb SINE Alu 3 291 -21 222 132 59 29 chrX 4803757 4803825 -157796105 + (TA)n Simple_repeat Simple_repeat 1 70 0 2260 73 39 3 chrX 4803836 4804122 -157795808 + AluSc SINE Alu 1 296 -13 1538 194 18 7 chrX 4804155 4804438 -157795492 + AluJo SINE Alu 1 286 -26 390 91 0 0 chrX 4804439 4804494 -157795436 + (CA)n Simple_repeat Simple_repeat 2 56 0 2001 98 42 0 chrX 4804527 4804812 -157795118 - AluSq SINE Alu -16 297 1 2040 155 0 0 chrX 4804820 4805116 -157794814 - AluSx SINE Alu -16 296 1 912 304 43 11 chrX 4805502 4805778 -157794152 + MLT1E LTR MaLR 280 564 -29 1222 204 5 14 chrX 4806382 4806603 -157793327 - MER20 DNA MER1_type 0 219 1 228 256 61 12 chrX 4806747 4806829 -157793101 - MER20B DNA MER1_type -633 150 65 366 23 0 0 chrX 4807171 4807214 -157792716 + (TG)n Simple_repeat Simple_repeat 1 43 0 2029 152 0 0 chrX 4807301 4807610 -157792320 - AluSx SINE Alu -2 310 2 414 161 35 0 chrX 4807617 4807704 -157792226 - L1MB3 LINE L1 0 6183 6094 294 125 0 0 chrX 4808298 4808346 -157791584 + (TC)n Simple_repeat Simple_repeat 1 48 0 351 0 0 0 chrX 4808349 4808388 -157791542 + (CA)n Simple_repeat Simple_repeat 1 39 0 4109 26 11 0 chrX 4808831 4809298 -157790632 - L1PA4 LINE L1 -3 6152 5681 2019 134 7 16 chrX 4809464 4809771 -157790159 - AluSx SINE Alu -7 305 2 1960 156 0 9 chrX 4810409 4810724 -157789206 - AluSx SINE Alu 0 312 1 210 71 0 0 chrX 4810853 4810881 -157789049 + (GA)n Simple_repeat Simple_repeat 2 29 0 304 289 68 55 chrX 4811326 4811548 -157788382 + MER106B DNA MER1_type 7 1058 -1 1962 150 0 3 chrX 4811716 4812022 -157787908 + AluJo SINE Alu 1 305 -7 1276 284 26 7 chrX 4812089 4812512 -157787418 + MER63B DNA MER1_type 6 436 0 1356 188 12 0 chrX 4812988 4813370 -157786560 + L1P5 LINE L1 5096 5480 -676 1698 168 46 7 chrX 4814797 4815082 -157784848 + AluJo SINE Alu 1 296 -16 1616 190 3 3 chrX 4816855 4817144 -157782786 - AluJb SINE Alu -23 289 1 214 143 32 16 chrX 4817952 4818015 -157781915 + CT-rich Low_complexity Low_complexity 1 64 0 1648 141 0 77 chrX 4818029 4818346 -157781584 - AluJo SINE Alu 0 450 165 2024 118 40 0 chrX 4818346 4818642 -157781288 - AluSq SINE Alu -5 308 1 1648 141 0 77 chrX 4818642 4818784 -157781146 - AluJo SINE Alu -285 165 14 834 236 75 30 chrX 4818952 4819247 -157780683 + MER58 DNA MER1_type 12 2420 0 2604 173 24 4 chrX 4821224 4821676 -157778254 - L1PA16 LINE L1 0 6166 5706 201 74 0 0 chrX 4822080 4822107 -157777823 + (TG)n Simple_repeat Simple_repeat 2 28 0 221 238 12 0 chrX 4822111 4822191 -157777739 + (CA)n Simple_repeat Simple_repeat 2 82 0 23 0 0 0 chrX 4822922 4822945 -157776985 + AT_rich Low_complexity Low_complexity 1 23 0 432 282 99 15 chrX 4823131 4823341 -157776589 + MLT1E1 LTR MaLR 15 244 -410 1645 235 121 50 chrX 4823410 4823964 -157775966 + MLT1E LTR MaLR 1 593 0 1099 293 56 58 chrX 4825077 4825596 -157774334 - MLT1E LTR MaLR -5 588 102 339 209 32 0 chrX 4825587 4825660 -157774270 - MLT1E LTR MaLR -430 137 64 * 360 298 43 31 chrX 4825838 4825999 -157773931 + MIR3 SINE MIR 44 206 -2 1073 212 23 46 chrX 4826061 4826368 -157773562 + MER33 DNA MER1_type 15 314 -10 250 337 12 65 chrX 4827071 4827240 -157772690 + MER5B DNA MER1_type 19 178 0 21 0 0 0 chrX 4827579 4827600 -157772330 + AT_rich Low_complexity Low_complexity 1 21 0 1057 149 8 2 chrX 4827873 4828063 -157771867 + L1PA16 LINE L1 5646 5835 -331 637 278 45 18 chrX 4828180 4828403 -157771527 - LTR16B LTR ERVL -231 233 5 1653 137 9 0 chrX 4828804 4829082 -157770848 - L1PA16 LINE L1 -196 5959 5669 1210 129 144 0 chrX 4829075 4829276 -157770654 + L1PA16 LINE L1 5928 6157 -9 * 688 414 99 39 chrX 4829680 4830062 -157769868 - MLT1C LTR MaLR -60 407 3 221 56 0 28 chrX 4830838 4830874 -157769056 + (TTTTA)n Simple_repeat Simple_repeat 1 35 0 626 65 0 2 chrX 4830874 4830959 -157768971 - L1PA3 LINE L1 -20 6148 6059 537 263 120 62 chrX 4831470 4831938 -157767992 - L1MC/D LINE L1 -1986 5822 5328 1839 155 10 0 chrX 4832052 4832349 -157767581 - MLT1B LTR MaLR 0 390 91 1753 188 14 51 chrX 4832353 4832570 -157767360 - MER2 DNA MER2_type -1 344 144 1798 180 30 35 chrX 4832570 4832909 -157767021 - MER1B DNA MER1_type 0 337 1 1753 188 14 51 chrX 4832909 4833047 -157766883 - MER2 DNA MER2_type -201 144 2 415 197 13 0 chrX 4833048 4833124 -157766806 - MLT1B LTR MaLR -303 87 11 1025 231 14 24 chrX 4833162 4833427 -157766503 + MLT2C1 LTR ERVL 99 429 -35 225 191 55 45 chrX 4833453 4833563 -157766367 + (TATAA)n Simple_repeat Simple_repeat 4 114 0 250 138 0 31 chrX 4833564 4833629 -157766301 + (TTATA)n Simple_repeat Simple_repeat 5 67 0 232 130 65 43 chrX 4833640 4833732 -157766198 + (TA)n Simple_repeat Simple_repeat 2 95 0 202 155 50 37 chrX 4833826 4833987 -157765943 + (TA)n Simple_repeat Simple_repeat 1 163 0 1107 135 0 12 chrX 4833998 4834161 -157765769 - AluJb SINE Alu -18 294 134 253 140 0 140 chrX 4834175 4834232 -157765698 + MLT2C1 LTR ERVL 354 397 0 3050 76 95 0 chrX 4834438 4834847 -157765083 - LTR7 LTR ERV1 -2 448 1 2179 106 70 14 chrX 4834847 4835216 -157764714 - HERVH LTR ERV1 0 7713 7324 1430 119 18 9 chrX 4835216 4835434 -157764496 - HERVH LTR ERV1 -1894 5819 5600 4431 138 1 1 chrX 4835435 4836097 -157763833 - HERVH LTR ERV1 -2564 5149 4488 3522 97 4 4 chrX 4836099 4836593 -157763337 - HERVH LTR ERV1 -3720 3993 3500 869 155 20 0 chrX 4836592 4836740 -157763190 - HERVH LTR ERV1 -4423 3290 3140 * 20331 92 14 23 chrX 4836734 4839749 -157760181 - HERVH LTR ERV1 -4726 2987 1 3065 73 95 0 chrX 4839751 4840160 -157759770 - LTR7 LTR ERV1 -2 448 1 1532 196 96 25 chrX 4840286 4840649 -157759281 - MLT1B LTR MaLR -1 389 1 189 0 0 0 chrX 4842800 4842821 -157757109 + (GA)n Simple_repeat Simple_repeat 2 22 0 225 323 0 0 chrX 4844135 4844197 -157755733 + L2 LINE L2 3209 3270 -2 184 280 147 87 chrX 4844584 4844734 -157755196 - MIR SINE MIR -91 171 13 470 274 144 45 chrX 4844907 4845108 -157754822 - MLT1E LTR MaLR -206 387 167 314 289 24 0 chrX 4845139 4845222 -157754708 - MLT1E LTR MaLR -457 85 1 2303 114 33 43 chrX 4845469 4845837 -157754093 - THE1B LTR MaLR 0 364 1 443 63 16 0 chrX 4845916 4845979 -157753951 + (ATG)n Simple_repeat Simple_repeat 2 65 0 199 301 217 18 chrX 4846341 4846507 -157753423 - MIR SINE MIR -1 261 63 203 284 11 23 chrX 4847270 4847358 -157752572 + (TATATG)n Simple_repeat Simple_repeat 4 90 0 693 308 101 27 chrX 4847421 4847895 -157752035 + Tigger8 DNA MER2_type 149 657 -9 23 33 0 0 chrX 4847992 4848022 -157751908 + AT_rich Low_complexity Low_complexity 1 30 0 2807 94 8 6 chrX 4848066 4848429 -157751501 - THE1B LTR MaLR 0 364 1 1729 173 0 10 chrX 4848767 4849062 -157750868 - AluJo SINE Alu -13 299 8 24 32 0 0 chrX 4849978 4850009 -157749921 + AT_rich Low_complexity Low_complexity 1 31 0 2240 106 0 3 chrX 4850141 4850433 -157749497 - AluSc SINE Alu -18 291 1 186 234 0 21 chrX 4851391 4851438 -157748492 + MER5A DNA MER1_type 11 56 -133 257 98 0 78 chrX 4851442 4851493 -157748437 - L1P LINE L1 -729 5427 5381 * 3331 179 20 38 chrX 4851489 4851542 -157748388 + L1MA4A LINE L1 5442 5494 -809 2232 113 3 3 chrX 4851542 4851853 -157748077 + AluSx SINE Alu 1 311 -1 3331 179 20 38 chrX 4851853 4852492 -157747438 + L1MA4A LINE L1 5494 6122 -181 451 196 11 0 chrX 4852495 4852592 -157747338 + L1MA4A LINE L1 6058 6278 -1 219 250 296 0 chrX 4852604 4852692 -157747238 + MER5A DNA MER1_type 63 176 -13 1442 247 80 30 chrX 4853267 4853765 -157746165 - Charlie1b DNA MER1_type 0 523 1 254 239 0 0 chrX 4853934 4853980 -157745950 - MER45 DNA AcHobo -21 1560 1515 1313 116 5 53 chrX 4853986 4854193 -157745737 + AluJo SINE Alu 87 283 -29 277 80 20 20 chrX 4854195 4854245 -157745685 + (TA)n Simple_repeat Simple_repeat 1 50 0 297 159 0 63 chrX 4854265 4854328 -157745602 - MER45 DNA AcHobo -74 104 46 626 332 48 45 chrX 4854403 4854918 -157745012 - L1MCc LINE L1 -5245 1178 662 1949 159 47 31 chrX 4855040 4855584 -157744346 - MLT2A2 LTR ERVL 0 554 1 965 143 0 45 chrX 4855687 4855841 -157744089 - AluJo SINE Alu -9 303 157 593 159 9 9 chrX 4855841 4855948 -157743982 - AluJo SINE Alu -204 108 2 415 286 32 0 chrX 4855948 4856074 -157743856 - L1MCc LINE L1 -5953 470 341 375 214 27 0 chrX 4856086 4856198 -157743732 - LTR37A LTR ERV1 -11 415 301 333 223 66 33 chrX 4856364 4856485 -157743445 - LTR37A LTR ERV1 -252 174 50 240 35 0 0 chrX 4857454 4857483 -157742447 + (T)n Simple_repeat Simple_repeat 1 29 0 1542 157 6 60 chrX 4858451 4858628 -157741302 - AluJo SINE Alu -2 310 156 2237 106 0 7 chrX 4858628 4858931 -157740999 - AluSg SINE Alu -9 301 1 1542 157 6 60 chrX 4858931 4859071 -157740859 - AluJo SINE Alu -156 156 10 452 323 25 12 chrX 4859119 4859280 -157740650 + MIR SINE MIR 31 193 -69 1822 166 3 19 chrX 4860290 4860604 -157739326 - AluJo SINE Alu -3 309 1 325 248 51 76 chrX 4860988 4861145 -157738785 - HAL1b LINE L1 -864 484 332 299 357 116 61 chrX 4861747 4862125 -157737805 + L2 LINE L2 2824 3222 -50 218 286 82 20 chrX 4862438 4862536 -157737394 - MIR SINE MIR -54 208 105 1410 185 66 44 chrX 4863216 4863578 -157736352 - MLT1A2 LTR MaLR 0 374 5 5346 81 1 1 chrX 4863626 4864317 -157735613 - LTR8 LTR ERV1 0 691 1 207 0 0 0 chrX 4864900 4864923 -157735007 + (TTTAA)n Simple_repeat Simple_repeat 3 25 0 2674 78 19 3 chrX 4864923 4865288 -157734642 - L1PA10 LINE L1 -17 6151 5778 1249 232 92 22 chrX 4865451 4865676 -157734254 - MSTD LTR MaLR 0 396 133 2140 95 0 3 chrX 4865676 4866010 -157733920 + AluSg1 SINE Alu 1 333 0 1249 232 92 22 chrX 4866010 4866153 -157733777 - MSTD LTR MaLR -263 133 1 1892 161 17 0 chrX 4866168 4866467 -157733463 + AluJo SINE Alu 1 304 -8 2231 121 0 6 chrX 4866467 4866781 -157733149 + AluSx SINE Alu 1 312 0 335 248 172 7 chrX 4867227 4867372 -157732558 + MLT1J1 LTR MaLR 3 171 -275 356 0 23 0 chrX 4867528 4867572 -157732358 + (TA)n Simple_repeat Simple_repeat 1 45 0 2618 93 11 16 chrX 4868812 4869189 -157730741 + THE1C LTR MaLR 1 375 0 345 140 0 0 chrX 4871118 4871175 -157728755 + (TA)n Simple_repeat Simple_repeat 2 58 0 459 92 0 0 chrX 4871797 4871862 -157728068 + (T)n Simple_repeat Simple_repeat 1 65 0 208 85 43 43 chrX 4872040 4872087 -157727843 + A-rich Low_complexity Low_complexity 5 51 0 324 335 188 0 chrX 4875759 4875929 -157724001 + MIR SINE MIR 1 202 -60 237 315 134 20 chrX 4876196 4876345 -157723585 + MIR SINE MIR 47 212 -50 228 250 0 0 chrX 4876565 4876625 -157723305 + (TA)n Simple_repeat Simple_repeat 2 61 0 297 366 36 32 chrX 4877106 4877357 -157722573 - L2 LINE L2 -467 2847 2596 233 128 21 0 chrX 4877399 4877446 -157722484 + GA-rich Low_complexity Low_complexity 4 51 0 987 180 120 0 chrX 4877670 4877853 -157722077 + AluJb SINE Alu 92 296 -16 228 398 8 16 chrX 4878734 4878862 -157721068 - MER5A DNA MER1_type 0 189 63 222 222 0 0 chrX 4880307 4880397 -157719533 + (TA)n Simple_repeat Simple_repeat 1 90 0 298 298 11 6 chrX 4881535 4881713 -157718217 + (TA)n Simple_repeat Simple_repeat 1 179 0 201 167 0 0 chrX 4881726 4881780 -157718150 + (TA)n Simple_repeat Simple_repeat 1 54 0 401 236 180 75 chrX 4882469 4882630 -157717300 + MER5A DNA MER1_type 11 188 -1 1219 151 0 0 chrX 4883040 4883225 -157716705 - AluJo SINE Alu -10 302 118 443 52 0 0 chrX 4883233 4883291 -157716639 + MADE1 DNA Mariner 22 79 -1 563 225 0 17 chrX 4883294 4883414 -157716516 - AluJo SINE Alu -184 118 1 1369 223 74 28 chrX 4883430 4883860 -157716070 - MLT1C LTR MaLR 0 467 18 2130 134 0 3 chrX 4884337 4884642 -157715288 + AluSx SINE Alu 1 304 -8 264 219 8 125 chrX 4885112 4885194 -157714736 - L1M LINE L1 -2379 5429 5366 1967 115 0 0 chrX 4885194 4885482 -157714448 - L1PA13 LINE L1 -3 6160 5873 264 219 8 125 chrX 4885482 4885527 -157714403 - L1M LINE L1 -2442 5366 5317 719 323 52 41 chrX 4885563 4886079 -157713851 - L1M4 LINE L1 -867 5279 4755 1877 125 80 0 chrX 4886079 4886368 -157713562 - AluSx SINE Alu 0 312 1 719 323 52 41 chrX 4886368 4886389 -157713541 - L1M4 LINE L1 -1391 4755 4736 669 166 0 0 chrX 4886607 4886752 -157713178 + GA-rich Low_complexity Low_complexity 1 145 0 180 77 0 0 chrX 4887523 4887549 -157712381 + (ATGGTG)n Simple_repeat Simple_repeat 3 28 0 22 56 0 0 chrX 4888085 4888121 -157711809 + AT_rich Low_complexity Low_complexity 1 36 0 1828 142 76 0 chrX 4889135 4889410 -157710520 - AluSg SINE Alu -14 296 1 991 142 108 48 chrX 4890399 4890540 -157709390 - L1MA8 LINE L1 -5 6286 6155 3125 88 12 2 chrX 4890540 4890970 -157708960 - MER57B LTR ERV1 0 434 1 991 142 108 48 chrX 4890970 4891096 -157708834 - L1MA8 LINE L1 -136 6155 6003 427 90 30 0 chrX 4891097 4891164 -157708766 + L1MA8 LINE L1 5908 5976 -336 656 238 83 0 chrX 4891537 4891718 -157708212 - MER58A DNA MER1_type 0 224 29 597 302 87 8 chrX 4892466 4892708 -157707222 + MIR SINE MIR 2 262 0 300 229 0 0 chrX 4896311 4896381 -157703549 - MER103 DNA DNA -87 79 10 358 359 48 7 chrX 4898563 4898836 -157701094 - L1MEd LINE L1 -3716 2413 2130 233 262 0 24 chrX 4899385 4899469 -157700461 - HAL1 LINE L1 -922 1585 1504 485 99 0 0 chrX 4899754 4899825 -157700105 - Alu SINE Alu -12 297 227 1135 172 0 0 chrX 4899825 4900005 -157699925 - AluJo SINE Alu -132 180 1 359 272 80 25 chrX 4900017 4900179 -157699751 - L1MEd LINE L1 -5017 1102 932 320 343 71 26 chrX 4900357 4900780 -157699150 - L1MEd LINE L1 -5300 819 378 303 337 94 30 chrX 4900935 4901137 -157698793 - L1MEd LINE L1 -5901 218 4 994 142 0 0 chrX 4902380 4902521 -157697409 - FRAM SINE Alu -24 152 12 1658 153 53 7 chrX 4902539 4902821 -157697109 - AluJo SINE Alu -17 295 1 1189 153 44 48 chrX 4902866 4903114 -157696816 + AluJo SINE Alu 41 287 -25 285 67 22 0 chrX 4904201 4904246 -157695684 + MADE1 DNA Mariner 1 46 -34 369 0 0 0 chrX 4904797 4904838 -157695092 + (CA)n Simple_repeat Simple_repeat 2 42 0 243 0 0 0 chrX 4904837 4904864 -157695066 + (TA)n Simple_repeat Simple_repeat 1 27 0 * 180 0 0 0 chrX 4905325 4905345 -157694585 + (TG)n Simple_repeat Simple_repeat 1 20 0 336 24 0 0 chrX 4905348 4905389 -157694541 + (TA)n Simple_repeat Simple_repeat 2 42 0 21 0 0 0 chrX 4906210 4906231 -157693699 + AT_rich Low_complexity Low_complexity 1 21 0 762 253 98 83 chrX 4906320 4906767 -157693163 - MER20B DNA MER1_type -140 643 190 273 309 45 54 chrX 4906768 4906991 -157692939 - MER20B DNA MER1_type -553 230 10 985 105 0 0 chrX 4907181 4907305 -157692625 - AluSq/x SINE Alu -188 124 1 25 0 0 0 chrX 4907545 4907570 -157692360 + AT_rich Low_complexity Low_complexity 1 25 0 7783 30 1 1 chrX 4907616 4908513 -157691417 - MER11D LTR ERVK 0 897 1 1414 260 189 36 chrX 4908749 4909664 -157690266 + Charlie1 DNA MER1_type 2 2353 -408 2485 142 34 5 chrX 4909969 4910385 -157689545 - MSTA LTR MaLR 0 428 1 2091 127 7 10 chrX 4910607 4910915 -157689015 - AluSx SINE Alu -5 307 1 3909 179 42 23 chrX 4910915 4911793 -157688137 - L1MC1 LINE L1 -6 6327 5433 1945 186 13 5 chrX 4911885 4912267 -157687663 + MLT1B LTR MaLR 6 390 0 2547 51 0 0 chrX 4912299 4912594 -157687336 - AluY SINE Alu -16 295 1 23 54 0 0 chrX 4912725 4912762 -157687168 + AT_rich Low_complexity Low_complexity 1 37 0 2059 67 82 0 chrX 4913050 4913332 -157686598 - AluY SINE Alu -6 305 1 392 291 44 25 chrX 4914748 4914906 -157685024 + LTR16A1 LTR ERVL 7 167 -290 267 246 0 0 chrX 4914967 4915032 -157684898 + LTR16A1 LTR ERVL 392 456 -1 370 308 70 42 chrX 4916016 4916230 -157683700 + MIR SINE MIR 9 228 -34 298 132 66 59 chrX 4916276 4916412 -157683518 + (TCTA)n Simple_repeat Simple_repeat 2 138 0 273 29 0 0 chrX 4916426 4916460 -157683470 + (TC)n Simple_repeat Simple_repeat 1 34 0 386 225 36 0 chrX 4916463 4916574 -157683356 - L1MC4 LINE L1 -1314 6728 6614 347 0 0 23 chrX 4916617 4916661 -157683269 + (CA)n Simple_repeat Simple_repeat 2 44 0 249 93 56 0 chrX 4917701 4917755 -157682175 + (TAGA)n Simple_repeat Simple_repeat 4 60 0 536 90 41 28 chrX 4917787 4917932 -157681998 + (TAGA)n Simple_repeat Simple_repeat 4 150 0 314 296 120 19 chrX 4918025 4918400 -157681530 - L1ME LINE L1 -388 5765 5350 205 300 11 0 chrX 4918489 4918579 -157681351 + (TA)n Simple_repeat Simple_repeat 1 91 0 343 290 76 37 chrX 4918722 4919129 -157680801 - L1ME LINE L1 -1031 5098 4676 29 90 0 0 chrX 4919137 4919215 -157680715 + AT_rich Low_complexity Low_complexity 1 78 0 390 279 73 46 chrX 4919433 4920025 -157679905 - L1ME LINE L1 -4866 1253 646 255 279 13 0 chrX 4920568 4920647 -157679283 - L1ME LINE L1 -6011 108 29 595 300 112 11 chrX 4920901 4921188 -157678742 + L2 LINE L2 2994 3309 -4 2093 135 3 3 chrX 4921351 4921648 -157678282 + AluSx SINE Alu 1 297 -15 240 35 0 0 chrX 4921648 4921677 -157678253 + (TA)n Simple_repeat Simple_repeat 1 29 0 289 270 6 6 chrX 4921698 4921876 -157678054 + (TATATG)n Simple_repeat Simple_repeat 3 180 0 374 257 0 12 chrX 4921892 4922063 -157677867 + (TATATG)n Simple_repeat Simple_repeat 2 170 0 299 298 0 0 chrX 4922063 4922157 -157677773 + (TA)n Simple_repeat Simple_repeat 2 95 0 26 82 0 0 chrX 4922203 4922264 -157677666 + AT_rich Low_complexity Low_complexity 1 61 0 1294 149 57 50 chrX 4922350 4922612 -157677318 - AluJo SINE Alu -48 264 1 22 0 0 0 chrX 4923238 4923260 -157676670 + AT_rich Low_complexity Low_complexity 1 22 0 1782 175 0 46 chrX 4923319 4923645 -157676285 - AluJb SINE Alu -1 311 1 701 216 25 49 chrX 4925328 4925532 -157674398 + L1MB2 LINE L1 5851 6049 -122 1774 175 3 33 chrX 4925532 4925831 -157674099 + L1PA15 LINE L1 5816 6104 -61 1808 133 67 25 chrX 4925831 4926191 -157673739 - THE1C LTR MaLR 0 375 1 1774 175 3 33 chrX 4926191 4926251 -157673679 + L1PA15 LINE L1 6104 6164 -1 510 167 44 18 chrX 4926254 4926368 -157673562 + L1MB2 LINE L1 6054 6170 -1 1958 143 44 0 chrX 4926611 4926904 -157673026 - AluJb SINE Alu -2 310 5 265 263 0 18 chrX 4927942 4927999 -157671931 + MER58 DNA MER1_type 1 56 -168 3047 103 33 2 chrX 4928043 4928499 -157671431 + L1PA13 LINE L1 5692 6161 -2 240 195 49 98 chrX 4928507 4928589 -157671341 + MER58 DNA MER1_type 2318 2395 -25 187 215 0 21 chrX 4930084 4930177 -157669753 + CT-rich Low_complexity Low_complexity 1 91 0 1868 133 39 19 chrX 4930206 4930567 -157669363 + L1MA2 LINE L1 5903 6270 -34 314 258 0 43 chrX 4930629 4930722 -157669208 + L1MC4 LINE L1 6614 6702 -1340 230 191 0 32 chrX 4930725 4930788 -157669142 + (CATATA)n Simple_repeat Simple_repeat 6 66 0 375 62 234 0 chrX 4930788 4930852 -157669078 + MADE1 DNA Mariner 1 79 -1 1382 196 64 57 chrX 4930887 4931183 -157668747 - MLT2C2 LTR ERVL -73 391 90 1485 171 23 48 chrX 4931183 4931493 -157668437 + AluJo SINE Alu 1 302 -10 1382 196 64 57 chrX 4931493 4931584 -157668346 - MLT2C2 LTR ERVL -374 90 1 809 120 0 0 chrX 4931619 4931744 -157668186 - L1PB3 LINE L1 -1 6153 6029 3739 107 20 118 chrX 4931844 4932683 -157667247 - L1PB3 LINE L1 -121 6033 5277 1016 234 75 51 chrX 4933312 4933770 -157666160 - MLT1C LTR MaLR -1 466 1 298 230 115 22 chrX 4933781 4933920 -157666010 - MLT1C LTR MaLR -124 343 192 1881 116 53 11 chrX 4934185 4934470 -157665460 - AluJo SINE Alu -15 297 1 438 255 99 36 chrX 4937348 4937521 -157662409 + MER20 DNA MER1_type 12 200 -19 4104 102 30 19 chrX 4937521 4938149 -157661781 - MER41B LTR ERV1 0 635 1 438 255 99 36 chrX 4938149 4938167 -157661763 + MER20 DNA MER1_type 200 215 -4 266 361 30 0 chrX 4939146 4939279 -157660651 + MIR3 SINE MIR 65 201 -7 203 217 29 0 chrX 4939450 4939519 -157660411 + (TA)n Simple_repeat Simple_repeat 1 71 0 1883 210 40 9 chrX 4939541 4939971 -157659959 - MLT2B2 LTR ERVL -39 515 3 1881 157 10 3 chrX 4941138 4941437 -157658493 - AluSx SINE Alu -11 301 1 2222 115 0 3 chrX 4942019 4942314 -157657616 - AluSx SINE Alu -18 294 1 512 131 0 0 chrX 4942540 4942624 -157657306 + L1MA2 LINE L1 6161 6244 -60 2165 134 0 0 chrX 4944401 4944743 -157655187 - AluSx SINE Alu 0 342 1 211 338 188 4 chrX 4945296 4945562 -157654368 + L2 LINE L2 2566 2880 -434 221 298 61 44 chrX 4945622 4945736 -157654194 + MER5A DNA MER1_type 74 189 0 267 54 0 0 chrX 4947531 4947568 -157652362 + (CAAAC)n Simple_repeat Simple_repeat 3 39 0 736 188 8 0 chrX 4947929 4948057 -157651873 + FLAM_A SINE Alu 1 129 -4 189 350 51 35 chrX 4948170 4948355 -157651575 - MIR SINE MIR -17 245 57 2198 128 0 0 chrX 4948865 4949161 -157650769 + AluSx SINE Alu 1 296 -16 1741 160 23 23 chrX 4949262 4949606 -157650324 - MLT1B LTR MaLR -46 344 1 306 123 0 0 chrX 4950048 4950105 -157649825 + (GA)n Simple_repeat Simple_repeat 2 58 0 559 200 15 7 chrX 4950764 4950899 -157649031 - L1MB7 LINE L1 -218 5966 5831 230 216 82 0 chrX 4950899 4950996 -157648934 + (TA)n Simple_repeat Simple_repeat 1 105 0 3646 131 35 11 chrX 4951504 4951856 -157648074 + L1MC1 LINE L1 5693 6068 -265 373 88 176 0 chrX 4951856 4951924 -157648006 - MADE1 DNA Mariner 0 80 1 3646 131 35 11 chrX 4951924 4952195 -157647735 + L1MC1 LINE L1 6068 6331 -2 381 225 0 0 chrX 4952336 4952416 -157647514 + L1MC1 LINE L1 6240 6319 -14 1899 155 39 130 chrX 4952439 4952863 -157647067 + L1PA16 LINE L1 5651 6013 -153 2696 38 0 0 chrX 4952863 4953181 -157646749 + AluYb8 SINE Alu 1 318 0 1899 155 39 130 chrX 4953181 4953318 -157646612 + L1PA16 LINE L1 6013 6161 -5 22 0 0 0 chrX 4954941 4954963 -157644967 + AT_rich Low_complexity Low_complexity 1 22 0 221 312 58 45 chrX 4955455 4955631 -157644299 - L2 LINE L2 -268 3004 2825 1073 158 0 0 chrX 4955646 4955810 -157644120 + FRAM SINE Alu 1 163 -13 244 244 26 39 chrX 4955860 4955938 -157643992 + L2 LINE L2 2691 2767 -547 2353 125 100 5 chrX 4955942 4956333 -157643597 + MSTA LTR MaLR 1 428 0 194 232 18 0 chrX 4956623 4956679 -157643251 - L2 LINE L2 -1730 1584 1528 526 138 0 0 chrX 4956776 4956856 -157643074 - MADE1 DNA Mariner 0 80 1 360 273 114 11 chrX 4957127 4957303 -157642627 - L1MB7 LINE L1 -302 5819 5626 192 370 50 0 chrX 4958402 4958502 -157641428 + L2 LINE L2 3206 3310 -3 1955 105 42 27 chrX 4959194 4959527 -157640403 + THE1B LTR MaLR 1 338 -26 323 0 0 0 chrX 4959553 4959590 -157640340 + THE1B LTR MaLR 319 355 0 4990 107 8 16 chrX 4960280 4960539 -157639391 - L1PA13 LINE L1 -4 6159 5899 2410 60 13 10 chrX 4960539 4960840 -157639090 + AluY SINE Alu 1 302 -9 4990 107 8 16 chrX 4960840 4961375 -157638555 - L1PA13 LINE L1 -264 5899 5372 377 293 148 33 chrX 4961383 4961653 -157638277 + HAL1b LINE L1 172 472 -876 400 252 62 78 chrX 4961704 4962077 -157637853 + HAL1b LINE L1 581 947 -401 5387 133 4 13 chrX 4962303 4963212 -157636718 - L1PA13 LINE L1 0 6163 5263 1984 212 19 33 chrX 4963671 4964156 -157635774 - LTR31 LTR ERV1 -15 604 127 3781 133 22 3 chrX 4965357 4965995 -157633935 + MER39B LTR ERV1 4 653 0 361 335 64 62 chrX 4966180 4966386 -157633544 - L2 LINE L2 -9 3304 3100 2332 107 0 0 chrX 4966386 4966695 -157633235 + AluSc SINE Alu 1 309 0 361 335 64 62 chrX 4966695 4967071 -157632859 - L2 LINE L2 -213 3100 2716 2014 150 0 0 chrX 4967363 4967657 -157632273 + AluJb SINE Alu 1 294 -18 366 121 0 0 chrX 4967701 4967767 -157632163 + (TTCC)n Simple_repeat Simple_repeat 2 67 0 188 108 0 27 chrX 4967789 4967826 -157632104 + (GAAAA)n Simple_repeat Simple_repeat 4 39 0 1883 199 13 5 chrX 4968567 4968959 -157630971 - L1PA16 LINE L1 -9 6157 5763 848 188 28 17 chrX 4968959 4969135 -157630795 - L1PA16 LINE L1 -310 5856 5679 2300 106 8 65 chrX 4969263 4969649 -157630281 + THE1B LTR MaLR 1 364 0 24 67 0 0 chrX 4972405 4972450 -157627480 + AT_rich Low_complexity Low_complexity 1 45 0 759 247 6 0 chrX 4972586 4972768 -157627162 - MER58A DNA MER1_type -1 223 41 242 211 19 0 chrX 4973392 4973444 -157626486 + AluJ/FLAM SINE Alu 17 69 -233 2730 148 140 27 chrX 4973541 4974169 -157625761 - LTR34 LTR ERV1 0 699 1 1217 318 92 46 chrX 4974174 4974322 -157625608 - L2 LINE L2 -5 3308 3168 2576 98 19 3 chrX 4974322 4974691 -157625239 - THE1C LTR MaLR 0 375 1 1217 318 92 46 chrX 4974691 4975458 -157624472 - L2 LINE L2 -145 3168 2358 1993 99 60 7 chrX 4975753 4976036 -157623894 - AluSq SINE Alu -15 298 1 2183 133 28 17 chrX 4976782 4977142 -157622788 + THE1B LTR MaLR 1 364 0 1719 187 18 22 chrX 4977179 4977566 -157622364 + L1PB4 LINE L1 5767 6276 -23 761 277 81 14 chrX 4977820 4978116 -157621814 + MLT1F1 LTR MaLR 252 567 0 2003 133 10 7 chrX 4978212 4978512 -157621418 + AluSx SINE Alu 10 310 -2 381 294 98 33 chrX 4978535 4978719 -157621211 + MIR SINE MIR 49 244 -18 640 149 9 0 chrX 4978900 4979014 -157620916 + L1MB8 LINE L1 6063 6177 -1 1902 154 7 0 chrX 4979093 4979386 -157620544 - AluJb SINE Alu -17 295 1 539 218 22 24 chrX 4979754 4979918 -157620012 - MLT1E LTR MaLR -374 177 12 518 198 16 16 chrX 4980544 4980665 -157619265 + MLT1E LTR MaLR 471 591 -2 541 259 30 51 chrX 4983346 4983543 -157616387 + MIR SINE MIR 70 262 0 270 0 0 0 chrX 4983774 4983804 -157616126 + (TG)n Simple_repeat Simple_repeat 2 31 0 1500 141 7 46 chrX 4984010 4984294 -157615636 + LTR8 LTR ERV1 1 273 -418 1376 147 23 34 chrX 4984315 4984581 -157615349 + LTR8 LTR ERV1 429 691 0 2004 140 0 23 chrX 4985310 4985617 -157614313 + AluSx SINE Alu 1 300 -12 24 0 0 0 chrX 4986351 4986375 -157613555 + AT_rich Low_complexity Low_complexity 1 24 0 332 163 0 25 chrX 4986377 4986457 -157613473 - L1MA4 LINE L1 -1 6299 6222 212 233 0 0 chrX 4986969 4987012 -157612918 + (TCCA)n Simple_repeat Simple_repeat 3 45 0 2143 137 0 0 chrX 4987152 4987465 -157612465 + AluSq SINE Alu 1 313 0 613 90 0 20 chrX 4987465 4987565 -157612365 + (GGAA)n Simple_repeat Simple_repeat 2 99 0 399 246 45 102 chrX 4987589 4987833 -157612097 - L1ME2 LINE L1 -30 6134 5905 381 158 105 0 chrX 4987825 4987901 -157612029 - L1M3 LINE L1 -548 5786 5703 * 331 222 11 22 chrX 4987902 4987992 -157611938 - L1ME2 LINE L1 -420 5744 5656 267 286 112 0 chrX 4987994 4988190 -157611740 - L1ME LINE L1 -3798 2742 2525 618 100 45 0 chrX 4988240 4988350 -157611580 - L1PA13 LINE L1 0 6163 6049 710 260 58 56 chrX 4988652 4989517 -157610413 - L1ME LINE L1 -4585 1955 1047 411 21 0 0 chrX 4989547 4989595 -157610335 + (TG)n Simple_repeat Simple_repeat 1 48 0 1399 110 5 0 chrX 4989615 4989824 -157610106 + MER41D LTR ERV1 1 210 -347 7719 23 0 0 chrX 4989878 4991149 -157608781 + L1PA3 LINE L1 4882 6152 -3 403 123 0 41 chrX 4991161 4991234 -157608696 + MER41D LTR ERV1 488 557 0 379 298 44 25 chrX 4991465 4991623 -157608307 + LTR16A1 LTR ERVL 7 167 -290 1016 257 85 26 chrX 4991778 4992237 -157607693 - L1M4 LINE L1 -1988 4158 3673 803 267 58 16 chrX 4992249 4992612 -157607318 - L1MEc LINE L1 -4418 1978 1601 216 0 0 0 chrX 4992641 4992665 -157607265 + (ATTG)n Simple_repeat Simple_repeat 2 25 0 2048 104 11 21 chrX 4992665 4992952 -157606978 - AluY SINE Alu -27 284 1 572 280 88 15 chrX 4993042 4993299 -157606631 - L1MEc LINE L1 -4854 1361 1063 453 19 0 0 chrX 4993299 4993353 -157606577 + (TG)n Simple_repeat Simple_repeat 2 55 0 572 280 88 15 chrX 4993353 4993492 -157606438 - L1MEc LINE L1 -5152 1063 936 1542 114 13 9 chrX 4993515 4993743 -157606187 - AluSg/x SINE Alu -7 305 77 763 264 10 40 chrX 4993771 4994074 -157605856 - L1MEc LINE L1 -5589 807 514 1312 117 0 0 chrX 4994175 4994346 -157605584 - AluSq SINE Alu -122 191 21 227 159 48 0 chrX 4994518 4994581 -157605349 - L1MC4 LINE L1 -1337 6705 6640 1325 197 4 8 chrX 4994805 4995059 -157604871 - AluJo SINE Alu -14 298 46 237 292 42 0 chrX 4995061 4995133 -157604797 - MER5A DNA MER1_type -114 75 1 998 242 17 4 chrX 4995765 4996005 -157603925 - MLT1D LTR MaLR -2 503 261 246 265 0 15 chrX 4996018 4996086 -157603844 + T-rich Low_complexity Low_complexity 3 69 0 206 348 54 0 chrX 4996358 4996450 -157603480 - MIR3 SINE MIR 0 208 112 2188 121 36 33 chrX 4996766 4997129 -157602801 + THE1B LTR MaLR 1 364 0 1976 209 27 8 chrX 4997644 4998130 -157601800 - L1MC2 LINE L1 -95 7658 6119 309 296 46 20 chrX 4998420 4998572 -157601358 - L1ME LINE L1 -355 5766 5611 809 136 21 0 chrX 4998580 4998720 -157601210 + L1ME LINE L1 5469 5611 -555 614 133 10 0 chrX 4998741 4998839 -157601091 - MLT2C2 LTR ERVL -205 259 161 1775 175 37 10 chrX 4998841 4999197 -157600733 + MLT1A1 LTR MaLR 1 365 0 546 228 6 6 chrX 4999197 4999355 -157600575 - MLT2C2 LTR ERVL -301 163 6 2780 129 11 23 chrX 4999813 5000286 -157599644 - L1PA16 LINE L1 -3 6163 5697 1566 169 83 4 chrX 5000370 5000821 -157599109 + AluJb SINE Alu 1 472 0 1648 159 61 3 chrX 5001507 5001838 -157598092 + AluJb SINE Alu 1 348 0 21 0 0 0 chrX 5002759 5002780 -157597150 + AT_rich Low_complexity Low_complexity 1 21 0 1388 272 91 28 chrX 5003128 5003778 -157596152 + L1MB8 LINE L1 4023 4713 -1433 * 1579 204 29 34 chrX 5003769 5004186 -157595744 + L1MB8 LINE L1 5727 6141 -37 3163 149 31 9 chrX 5004490 5005032 -157594898 - MER41C LTR ERV1 0 554 1 195 277 0 0 chrX 5005493 5005558 -157594372 + (TA)n Simple_repeat Simple_repeat 2 66 0 299 289 45 53 chrX 5005794 5006040 -157593890 - L1M4 LINE L1 -1499 4647 4404 2071 92 13 46 chrX 5006405 5006711 -157593219 + AluSq SINE Alu 3 298 -15 2578 129 4 62 chrX 5006744 5007226 -157592704 + LTR8 LTR ERV1 1 454 -237 2883 136 25 34 chrX 5007226 5007756 -157592174 + MER61E LTR ERV1 1 525 -44 1212 138 24 55 chrX 5007759 5008013 -157591917 + LTR8 LTR ERV1 446 691 0 303 222 0 0 chrX 5008298 5008361 -157591569 - L1MC3 LINE L1 -517 7268 7206 1036 132 22 7 chrX 5008371 5008686 -157591244 - MLT2A2 LTR ERVL -4 449 197 2924 62 2 107 chrX 5008686 5008766 -157591164 - MLT2A1 LTR ERVL 0 444 357 2367 87 3 0 chrX 5008766 5009066 -157590864 + AluSp SINE Alu 1 301 -12 2924 62 2 107 chrX 5009066 5009130 -157590800 - MLT2A1 LTR ERVL -87 357 288 2568 85 8 3 chrX 5009130 5009483 -157590447 - THE1A LTR MaLR 0 355 1 2924 62 2 107 chrX 5009483 5009833 -157590097 - MLT2A1 LTR ERVL -156 288 1 1477 71 5 0 chrX 5009835 5010033 -157589897 - MLT2A2 LTR ERVL -254 199 1 329 249 10 48 chrX 5010057 5010163 -157589767 - L1MC4 LINE L1 -768 7099 6927 2097 76 3 8 chrX 5010165 5010526 -157589404 - LTR7 LTR ERV1 -2 448 1 1010 270 108 14 chrX 5010528 5010844 -157589086 - L1MC4 LINE L1 -1028 7014 6632 3262 146 47 17 chrX 5010844 5011446 -157588484 - LTR29 LTR ERV1 -2 620 1 1010 270 108 14 chrX 5011446 5011629 -157588301 - L1MC4 LINE L1 -1410 6632 6468 1915 140 0 11 chrX 5011728 5012006 -157587924 - AluSx SINE Alu -36 276 2 3852 147 11 0 chrX 5012175 5012803 -157587127 + MER41B LTR ERV1 1 635 0 811 310 37 13 chrX 5013317 5013691 -157586239 - L1ME LINE L1 -5651 419 37 661 209 5 32 chrX 5014149 5014306 -157585624 + L1MB8 LINE L1 5750 5903 -275 9066 39 2 2 chrX 5014306 5015377 -157584553 - MER11C LTR ERVK 0 1071 1 661 209 5 32 chrX 5015377 5015406 -157584524 + L1MB8 LINE L1 5903 5931 -247 262 259 0 12 chrX 5015444 5015525 -157584405 + LTR16B LTR ERVL 375 454 -10 4397 138 26 21 chrX 5015794 5016598 -157583332 + L1MA4 LINE L1 5492 6299 -1 25 0 0 0 chrX 5019098 5019123 -157580807 + AT_rich Low_complexity Low_complexity 1 25 0 2167 144 61 16 chrX 5019174 5019603 -157580327 - L1MA9 LINE L1 -43 6269 5822 943 181 2 5 chrX 5019899 5020448 -157579482 + (CAT)n Simple_repeat Simple_repeat 1 547 0 664 189 0 38 chrX 5020444 5020629 -157579301 + (CACCAT)n Simple_repeat Simple_repeat 3 180 0 * 756 191 0 0 chrX 5020597 5020775 -157579155 + (CAT)n Simple_repeat Simple_repeat 2 179 0 231 365 21 21 chrX 5021061 5021206 -157578724 - L2 LINE L2 0 3313 3169 440 205 0 41 chrX 5022351 5022492 -157577438 + MER5B DNA MER1_type 2 177 -1 255 318 24 12 chrX 5022564 5022649 -157577281 - MER5A DNA MER1_type -86 103 18 1483 204 32 24 chrX 5023010 5023387 -157576543 - MLT1D LTR MaLR -8 497 118 340 132 26 66 chrX 5023666 5023742 -157576188 - MLT1D LTR MaLR -420 85 13 * 3101 147 29 11 chrX 5023739 5024297 -157575633 - LTR24B LTR ERV1 -5 571 4 1401 168 40 0 chrX 5024511 5024785 -157575145 - MER7A DNA MER2_type -1 345 63 619 208 15 0 chrX 5024822 5024952 -157574978 - MER7A DNA MER2_type -216 130 1 34 42 0 0 chrX 5025206 5025254 -157574676 + AT_rich Low_complexity Low_complexity 1 48 0 1968 159 7 7 chrX 5025339 5025647 -157574283 + AluJo SINE Alu 1 308 -4 358 306 88 26 chrX 5025948 5026141 -157573789 + MIR SINE MIR 15 219 -43 361 130 30 20 chrX 5027088 5027188 -157572742 + (TA)n Simple_repeat Simple_repeat 1 101 0 271 263 38 12 chrX 5029459 5029539 -157570391 + MIR SINE MIR 88 169 -93 261 0 0 0 chrX 5029625 5029654 -157570276 + (TG)n Simple_repeat Simple_repeat 2 30 0 1595 213 71 69 chrX 5029732 5030367 -157569563 + MER92B LTR ERV1 1 636 0 3126 99 4 25 chrX 5030902 5031377 -157568553 - MER4C LTR ERV1 0 465 1 915 263 121 36 chrX 5031396 5031730 -157568200 - MLT2F LTR ERVL -173 490 107 4301 153 39 20 chrX 5031730 5032495 -157567435 - LTR39 LTR ERV1 0 783 4 915 263 121 36 chrX 5032495 5032608 -157567322 - MLT2F LTR ERVL -556 107 5 883 218 50 50 chrX 5033080 5033273 -157566657 - MER58B DNA MER1_type -2080 340 145 3863 145 35 22 chrX 5033273 5033990 -157565940 - L1MC1 LINE L1 -2 6331 5606 883 218 50 50 chrX 5033990 5034058 -157565872 - MER58B DNA MER1_type -2274 146 79 2470 62 0 0 chrX 5034156 5034448 -157565482 - AluY SINE Alu -19 292 1 1184 249 31 62 chrX 5036161 5036343 -157563587 + MLT1C LTR MaLR 1 187 -280 1932 134 0 23 chrX 5036343 5036509 -157563421 - AluSx SINE Alu -12 300 132 2369 87 0 3 chrX 5036509 5036807 -157563123 - AluSx SINE Alu -11 301 5 450 94 0 0 chrX 5036815 5036879 -157563051 + (TA)n Simple_repeat Simple_repeat 2 65 0 1932 134 0 23 chrX 5036879 5037010 -157562920 - AluSx SINE Alu -187 125 1 1184 249 31 62 chrX 5037010 5037309 -157562621 + MLT1C LTR MaLR 187 467 0 1945 163 40 36 chrX 5037457 5038006 -157561924 + MLT2A2 LTR ERVL 1 554 0 396 288 30 0 chrX 5038040 5038172 -157561758 + L2 LINE L2 2161 2296 -1018 406 287 109 17 chrX 5038186 5038360 -157561570 - MIR SINE MIR -14 248 59 35 0 0 0 chrX 5038421 5038456 -157561474 + AT_rich Low_complexity Low_complexity 1 35 0 1450 184 26 45 chrX 5038514 5038824 -157561106 - AluJo SINE Alu -8 304 1 184 328 0 30 chrX 5038878 5038945 -157560985 + MIR SINE MIR 125 189 -73 1033 186 134 0 chrX 5039359 5039553 -157560377 + AluJo SINE Alu 1 220 -92 1091 218 153 0 chrX 5039589 5039850 -157560080 + AluJo SINE Alu 11 311 -1 225 29 0 59 chrX 5040181 5040215 -157559715 + L1P4 LINE L1 5693 5724 -439 2751 194 91 56 chrX 5041068 5041884 -157558046 + MER21B LTR ERV1 1 844 -19 870 238 5 0 chrX 5041909 5042098 -157557832 + MER58A DNA MER1_type 35 224 0 600 271 35 15 chrX 5043691 5043894 -157556036 + MER3 DNA MER1_type 3 209 0 333 0 0 0 chrX 5043987 5044024 -157555906 + (T)n Simple_repeat Simple_repeat 1 37 0 2184 119 20 0 chrX 5044074 5044369 -157555561 + AluSx SINE Alu 3 303 -9 1758 257 15 39 chrX 5044579 5044663 -157555267 + MLT1E2 LTR MaLR 1 85 -541 1875 152 35 70 chrX 5044663 5045065 -157554865 + MLT1B LTR MaLR 3 390 0 1758 257 15 39 chrX 5045065 5045521 -157554409 + MLT1E2 LTR MaLR 85 528 -98 835 176 0 121 chrX 5045575 5045774 -157554156 - AluJo SINE Alu -52 260 86 350 258 0 0 chrX 5045774 5045871 -157554059 + MLT1E2 LTR MaLR 530 626 0 213 276 17 0 chrX 5046632 5046690 -157553240 - L2 LINE L2 -5 3308 3250 619 234 108 73 chrX 5046962 5047279 -157552651 - MER4C LTR ERV1 0 694 276 547 194 48 75 chrX 5047278 5047547 -157552383 - LTR59 LTR ERV1 -220 377 136 * 421 144 39 19 chrX 5047633 5047737 -157552193 - MER4C LTR ERV1 -359 106 1 963 254 103 67 chrX 5048127 5048634 -157551296 + MLT1E2 LTR MaLR 80 604 -22 574 182 0 0 chrX 5049071 5049181 -157550749 + L1MB1 LINE L1 6019 6128 -40 719 203 23 60 chrX 5049214 5049431 -157550499 + AluJo SINE Alu 3 211 -101 252 191 0 15 chrX 5049733 5049815 -157550115 + (TTG)n Simple_repeat Simple_repeat 1 80 0 577 121 0 0 chrX 5050149 5050232 -157549698 - AluJo SINE Alu -229 83 1 1758 161 28 24 chrX 5050686 5050977 -157548953 - AluJo SINE Alu -20 292 1 1055 255 143 37 chrX 5050979 5051488 -157548442 - MLT1E LTR MaLR -12 581 19 467 110 0 0 chrX 5051612 5051685 -157548245 + L1PA16 LINE L1 6091 6163 -3 215 271 0 0 chrX 5052032 5052080 -157547850 + (TA)n Simple_repeat Simple_repeat 2 49 0 1525 217 15 35 chrX 5052834 5053290 -157546640 - L1MB8 LINE L1 -5 6173 5727 3027 23 0 0 chrX 5053796 5054147 -157545783 + L1PA4 LINE L1 5802 6152 -3 1183 139 8 48 chrX 5054638 5054890 -157545040 + L1MA5A LINE L1 6054 6295 -2 207 350 14 70 chrX 5055087 5055230 -157544700 - MIR3 SINE MIR -72 136 2 391 197 24 39 chrX 5055523 5055650 -157544280 - L1MC4 LINE L1 0 8042 7918 290 200 47 0 chrX 5055679 5055764 -157544166 + (TA)n Simple_repeat Simple_repeat 1 89 0 661 218 111 70 chrX 5055773 5056204 -157543726 - L1MC4 LINE L1 -147 7895 7447 615 256 0 0 chrX 5056286 5056462 -157543468 + (TA)n Simple_repeat Simple_repeat 2 177 0 439 324 0 7 chrX 5056472 5056617 -157543313 + (TATATG)n Simple_repeat Simple_repeat 4 147 0 1942 147 0 3 chrX 5059641 5059967 -157539963 + AluSx SINE Alu 1 325 0 1929 177 3 0 chrX 5060046 5060357 -157539573 - AluJo SINE Alu 0 312 1 2269 119 0 3 chrX 5060573 5060885 -157539045 + AluSx SINE Alu 1 311 -1 360 0 0 0 chrX 5061031 5061071 -157538859 + (TAAA)n Simple_repeat Simple_repeat 1 40 0 837 213 15 15 chrX 5061182 5061379 -157538551 + MER58A DNA MER1_type 27 223 -1 260 290 0 14 chrX 5062586 5062655 -157537275 + L2 LINE L2 3242 3309 -4 287 299 114 30 chrX 5063327 5063494 -157536436 + MIR SINE MIR 52 232 -30 1686 191 10 0 chrX 5063943 5064231 -157535699 - AluJb SINE Alu -21 291 1 1456 183 173 90 chrX 5065144 5065922 -157534008 + LTR1B LTR ERV1 1 1020 0 1596 200 13 27 chrX 5066698 5066998 -157532932 - AluJo SINE Alu -16 296 1 195 307 68 34 chrX 5067794 5067882 -157532048 + MIR SINE MIR 55 145 -63 335 236 28 0 chrX 5068048 5068120 -157531810 - MER58A DNA MER1_type -31 76 3 21 0 0 0 chrX 5068263 5068284 -157531646 + AT_rich Low_complexity Low_complexity 1 21 0 350 205 3 0 chrX 5068672 5068747 -157531183 + L1PB4 LINE L1 5735 5811 -355 798 73 0 0 chrX 5069477 5069587 -157530343 + (GAAA)n Simple_repeat Simple_repeat 3 112 0 1653 197 15 6 chrX 5069591 5069931 -157529999 + L1PB4 LINE L1 5808 6150 -6 441 259 0 17 chrX 5069932 5070048 -157529882 + MIR SINE MIR 149 262 0 229 163 82 0 chrX 5070063 5070112 -157529818 + LTR16A1 LTR ERVL 405 457 0 2143 118 0 14 chrX 5070667 5070963 -157528967 - AluSx SINE Alu -20 292 1 1868 135 56 31 chrX 5071256 5071611 -157528319 - THE1B LTR MaLR 0 364 1 637 249 15 34 chrX 5071877 5072082 -157527848 + MER20 DNA MER1_type 16 216 -3 201 39 0 0 chrX 5073364 5073390 -157526540 + (TTTG)n Simple_repeat Simple_repeat 2 27 0 26 0 0 0 chrX 5074268 5074294 -157525636 + AT_rich Low_complexity Low_complexity 1 26 0 4492 137 31 23 chrX 5074421 5075283 -157524647 - L1PB4 LINE L1 -12 6144 5276 510 303 0 13 chrX 5075384 5075536 -157524394 - MER63 DNA MER1_type -277 785 10 505 313 7 0 chrX 5076462 5076606 -157523324 + MER63A DNA MER1_type 57 201 -9 1578 222 128 18 chrX 5076700 5076824 -157523106 - MLT1D LTR MaLR 0 505 396 3662 129 22 19 chrX 5076824 5077083 -157522847 - L1PA16 LINE L1 0 6166 5909 2137 114 19 53 chrX 5077083 5077460 -157522470 - THE1B LTR MaLR 0 364 1 3662 129 22 19 chrX 5077460 5077830 -157522100 - L1PA16 LINE L1 -257 5909 5535 1578 222 128 18 chrX 5077830 5078160 -157521770 - MLT1D LTR MaLR -109 396 1 554 152 0 0 chrX 5078346 5078438 -157521492 - AluY SINE Alu -6 305 214 342 292 0 0 chrX 5078627 5078716 -157521214 - L1MC4 LINE L1 -1339 6703 6615 534 213 0 55 chrX 5079367 5079494 -157520436 - FLAM_A SINE Alu -9 133 14 711 180 0 0 chrX 5079600 5079722 -157520208 - FLAM_C SINE Alu -21 122 1 978 206 42 35 chrX 5079758 5079879 -157520051 - MER33 DNA MER1_type -2269 316 197 2502 148 21 23 chrX 5079879 5080312 -157519618 + Tigger2a DNA MER2_type 2 433 -1 978 206 42 35 chrX 5080312 5080500 -157519430 - MER33 DNA MER1_type -2388 197 5 257 73 0 24 chrX 5080636 5080677 -157519253 + (TTA)n Simple_repeat Simple_repeat 2 41 0 181 191 0 48 chrX 5081281 5081344 -157518586 + CT-rich Low_complexity Low_complexity 2 61 0 2068 155 0 0 chrX 5081450 5081759 -157518171 - AluJo SINE Alu -3 309 1 225 278 81 40 chrX 5082105 5082303 -157517627 + L1M4 LINE L1 4741 4946 -1200 1126 231 4 16 chrX 5082317 5082568 -157517362 + AluJo SINE Alu 41 288 -24 1683 112 28 17 chrX 5083104 5083391 -157516539 + THE1C LTR MaLR 86 375 0 385 242 91 0 chrX 5083404 5083503 -157516427 - MER3 DNA MER1_type -101 108 1 372 222 94 26 chrX 5083506 5083623 -157516307 - L2 LINE L2 0 3313 3189 386 176 0 0 chrX 5083794 5083868 -157516062 + MADE1 DNA Mariner 7 80 0 198 263 147 21 chrX 5083904 5084000 -157515930 - MIR SINE MIR -37 171 63 24 32 0 0 chrX 5084787 5084818 -157515112 + AT_rich Low_complexity Low_complexity 1 31 0 2217 59 42 3 chrX 5085391 5085680 -157514250 - AluY SINE Alu -11 300 1 1759 234 59 25 chrX 5086759 5087247 -157512683 - MLT1D LTR MaLR 0 505 1 282 301 29 10 chrX 5087629 5087732 -157512198 - MIR3 SINE MIR -17 191 87 2170 119 23 52 chrX 5088429 5088815 -157511115 + THE1C LTR MaLR 1 375 0 397 320 85 7 chrX 5088887 5089040 -157510890 - MIR SINE MIR -50 212 48 362 214 15 20 chrX 5089866 5090063 -157509867 + GA-rich Low_complexity Low_complexity 1 195 0 653 183 0 9 chrX 5090083 5090344 -157509586 + FLAM_C SINE Alu 1 260 0 189 0 0 0 chrX 5090462 5090483 -157509447 + (TTTG)n Simple_repeat Simple_repeat 4 24 0 2227 81 3 0 chrX 5090491 5090774 -157509156 - AluY SINE Alu -27 284 1 199 359 0 0 chrX 5090979 5091043 -157508887 + L2 LINE L2 3209 3272 0 3261 82 22 2 chrX 5091866 5092318 -157507612 - L1PA10 LINE L1 -13 6155 5695 1817 88 0 0 chrX 5092431 5092659 -157507271 - AluSc SINE Alu -9 300 73 387 217 66 0 chrX 5092759 5092865 -157507065 + L1MB8 LINE L1 6060 6172 -6 231 180 0 0 chrX 5092868 5092878 -157507052 + (TA)n Simple_repeat Simple_repeat 1 10 -40 3001 58 3 0 chrX 5092878 5093259 -157506671 - L1PA7 LINE L1 -7 6147 5766 231 180 0 0 chrX 5093259 5093298 -157506632 + (TA)n Simple_repeat Simple_repeat 9 50 0 402 327 105 34 chrX 5093565 5093947 -157505983 - L1ME LINE L1 -446 5675 5267 27 29 0 0 chrX 5094521 5094555 -157505375 + AT_rich Low_complexity Low_complexity 1 34 0 250 83 0 0 chrX 5094971 5095007 -157504923 - MADE1 DNA Mariner 0 80 45 325 292 42 31 chrX 5095138 5095330 -157504600 + L1ME LINE L1 5064 5257 -889 349 336 16 8 chrX 5095337 5095581 -157504349 + L1ME LINE L1 5263 5508 -656 703 239 24 24 chrX 5095588 5095797 -157504133 + MER3 DNA MER1_type 1 209 0 531 194 78 0 chrX 5095914 5096017 -157503913 + FRAM SINE Alu 45 155 -21 1209 196 158 117 chrX 5096872 5097685 -157502245 + LTR1B LTR ERV1 1 1020 0 249 98 0 0 chrX 5097702 5097743 -157502187 + (TG)n Simple_repeat Simple_repeat 1 41 0 922 98 50 7 chrX 5098012 5098278 -157501652 + CT-rich Low_complexity Low_complexity 1 277 0 1025 139 63 0 chrX 5098418 5098576 -157501354 - AluJb SINE Alu -4 308 141 499 175 19 62 chrX 5098693 5098853 -157501077 + L1P LINE L1 3840 3992 -2154 607 288 58 10 chrX 5099034 5099239 -157500691 - MER58A DNA MER1_type -9 215 1 328 267 65 65 chrX 5099252 5099499 -157500431 + L1M4 LINE L1 2789 3035 -3111 1320 223 3 3 chrX 5099546 5099833 -157500097 + AluY SINE Alu 1 287 -24 1339 182 171 62 chrX 5200113 5200568 -157399362 + MLT1D LTR MaLR 1 505 0 1515 220 73 45 chrX 5201140 5201603 -157398327 + MER39 LTR ERV1 232 707 0 240 303 41 78 chrX 5201754 5201998 -157397932 + L2 LINE L2 2268 2502 -812 1641 180 14 17 chrX 5202023 5202312 -157397618 + AluJo SINE Alu 1 288 -24 25 0 0 0 chrX 5202315 5202340 -157397590 + AT_rich Low_complexity Low_complexity 1 25 0 274 404 18 18 chrX 5202570 5202795 -157397135 + L2 LINE L2 2560 2784 -530 871 144 0 0 chrX 5202834 5202952 -157396978 + FLAM_C SINE Alu 1 118 -25 2034 133 10 0 chrX 5203135 5203435 -157396495 + AluSx SINE Alu 1 303 -9 2135 161 31 3 chrX 5203664 5204019 -157395911 + MER47A DNA MER2_type 1 365 -1 1700 171 22 0 chrX 5204286 5204561 -157395369 - AluJb SINE Alu -31 281 1 238 205 24 0 chrX 5204682 5204765 -157395165 + (TAGA)n Simple_repeat Simple_repeat 2 86 0 519 128 35 37 chrX 5204864 5205134 -157394796 + (TAGA)n Simple_repeat Simple_repeat 1 269 0 246 194 83 0 chrX 5205294 5205366 -157394564 + L1MC4 LINE L1 6618 6695 -1347 180 0 0 0 chrX 5205366 5205386 -157394544 + (TG)n Simple_repeat Simple_repeat 2 21 0 264 230 45 126 chrX 5205459 5205681 -157394249 - L1ME4a LINE L1 -157 5964 5761 1626 201 3 7 chrX 5207009 5207303 -157392627 - AluJo SINE Alu -19 293 1 846 178 0 0 chrX 5207303 5207438 -157392492 - AluJo SINE Alu -177 135 1 668 256 22 44 chrX 5207897 5208157 -157391773 + MLT1E LTR MaLR 13 233 -391 1903 122 32 10 chrX 5208166 5208536 -157391394 - L1PB4 LINE L1 -598 5558 5184 * 3682 123 6 10 chrX 5208535 5209128 -157390802 + L1PB4 LINE L1 5565 6154 -2 726 269 31 59 chrX 5209160 5209446 -157390484 + MLT1E LTR MaLR 206 483 -110 1894 130 93 17 chrX 5209451 5209804 -157390126 - MLT1B LTR MaLR -7 383 4 594 177 9 18 chrX 5209808 5209921 -157390009 + MLT1E LTR MaLR 479 590 -3 1374 157 8 0 chrX 5210236 5210478 -157389452 + L1M2 LINE L1 5550 5793 -519 322 279 47 0 chrX 5210513 5210599 -157389331 + L1MC4 LINE L1 6614 6703 -1339 611 163 42 226 chrX 5210710 5210840 -157389090 - MLT1A1 LTR MaLR -63 311 159 518 100 0 25 chrX 5210840 5210920 -157389010 - MADE1 DNA Mariner 0 80 3 611 163 42 226 chrX 5210920 5211170 -157388760 - MLT1A1 LTR MaLR -215 159 1 3279 143 98 22 chrX 5211805 5212224 -157387706 - Tigger3(Golem) DNA MER2_type 0 3029 2535 2057 120 40 7 chrX 5212224 5212525 -157387405 - AluSx SINE Alu -1 311 1 3279 143 98 22 chrX 5212525 5212799 -157387131 - Tigger3(Golem) DNA MER2_type -494 2535 2283 579 164 10 0 chrX 5212792 5212896 -157387034 - Tigger3(Golem) DNA MER2_type -2924 105 1 * 1508 243 40 50 chrX 5212933 5213452 -157386478 - LTR40a LTR ERVL 0 519 6 252 149 0 0 chrX 5214357 5214404 -157385526 + (GA)n Simple_repeat Simple_repeat 2 48 0 21 36 0 0 chrX 5214707 5214735 -157385195 + AT_rich Low_complexity Low_complexity 1 28 0 2144 235 5 43 chrX 5214954 5215512 -157384418 + MLT1F LTR MaLR 6 542 0 2233 146 22 3 chrX 5215731 5216088 -157383842 - THE1B LTR MaLR 0 364 1 276 198 85 38 chrX 5216314 5216420 -157383510 + L1ME LINE L1 5713 5823 -298 1762 176 7 3 chrX 5216461 5216751 -157383179 - AluJo SINE Alu -21 291 1 1760 75 9 0 chrX 5217297 5217525 -157382405 + AluSp SINE Alu 76 305 -8 274 327 9 19 chrX 5219815 5219922 -157380008 - MIR SINE MIR -57 205 100 209 229 0 0 chrX 5219991 5220039 -157379891 + MIR SINE MIR 106 153 -109 290 331 153 0 chrX 5220056 5220180 -157379750 - MIR SINE MIR -109 153 11 1963 126 0 20 chrX 5220268 5220558 -157379372 + AluSq SINE Alu 1 110 -203 363 23 0 0 chrX 5220558 5220602 -157379328 + (CATAA)n Simple_repeat Simple_repeat 2 45 0 1963 126 0 20 chrX 5220602 5220803 -157379127 + AluSq SINE Alu 110 313 0 190 369 117 0 chrX 5221985 5222096 -157377834 + MIR SINE MIR 16 139 -69 1145 141 0 18 chrX 5222651 5222821 -157377109 + AluJo SINE Alu 1 167 -145 555 308 28 34 chrX 5223774 5223890 -157376040 - L1ME3A LINE L1 -33 6137 6022 2377 141 3 3 chrX 5223890 5224265 -157375665 - THE1C LTR MaLR 0 375 1 555 308 28 34 chrX 5224265 5224502 -157375428 - L1ME3A LINE L1 -148 6022 5786 1084 275 65 14 chrX 5225153 5225586 -157374344 - L1ME3A LINE L1 -8 6162 5708 244 175 70 0 chrX 5225588 5225645 -157374285 - MSTA LTR MaLR 0 428 368 23 0 0 0 chrX 5225669 5225692 -157374238 + AT_rich Low_complexity Low_complexity 1 23 0 2271 130 10 55 chrX 5225696 5226096 -157373834 - MSTA LTR MaLR -46 382 1 688 267 6 68 chrX 5226097 5226449 -157373481 - L1ME3A LINE L1 -461 5709 5380 367 98 0 0 chrX 5226450 5226501 -157373429 - MSTB LTR MaLR 0 426 376 1339 167 18 13 chrX 5226503 5226730 -157373200 - AluJo SINE Alu -84 228 1 334 301 27 48 chrX 5229255 5229401 -157370529 - MIR SINE MIR 0 262 120 2212 130 16 19 chrX 5229530 5229906 -157370024 + THE1C LTR MaLR 1 375 0 245 143 0 0 chrX 5230004 5230039 -157369891 - MER5A DNA MER1_type 0 189 155 1172 244 24 3 chrX 5230048 5230339 -157369591 - MER58B DNA MER1_type -2 339 43 2805 128 15 2 chrX 5230345 5230806 -157369124 - MER41B LTR ERV1 0 635 169 348 228 26 26 chrX 5230976 5231090 -157368840 + Charlie8 DNA MER1_type 77 190 -2227 1859 132 140 13 chrX 5231157 5231535 -157368395 - MSTA LTR MaLR 0 428 3 591 225 42 37 chrX 5231692 5231883 -157368047 + Tigger2 DNA MER2_type 1 192 -2526 696 187 22 14 chrX 5232111 5232250 -157367680 + Tigger2 DNA MER2_type 2579 2718 0 721 170 24 48 chrX 5232296 5232461 -157367469 - MLT1A1 LTR MaLR 0 365 217 4445 139 111 98 chrX 5232461 5233985 -157365945 - pTR5 LTR ERV1 -8 2430 714 444 209 122 0 chrX 5233996 5234111 -157365819 - MLT1A1 LTR MaLR -218 147 19 301 329 44 29 chrX 5234122 5234259 -157365671 - MIR SINE MIR -104 158 20 226 210 43 29 chrX 5234884 5235022 -157364908 + (TATAA)n Simple_repeat Simple_repeat 5 144 0 284 206 0 29 chrX 5235106 5235242 -157364688 + (TA)n Simple_repeat Simple_repeat 1 132 0 1780 168 46 0 chrX 5235245 5235573 -157364357 - MER7A DNA MER2_type -5 341 1 2359 121 84 74 chrX 5235652 5236243 -157363687 - MER4B LTR ERV1 0 779 26 256 337 22 0 chrX 5236325 5236417 -157363513 - MIR SINE MIR -104 158 65 348 178 28 0 chrX 5236477 5236584 -157363346 + (TA)n Simple_repeat Simple_repeat 2 111 0 231 146 0 0 chrX 5237148 5237189 -157362741 + (T)n Simple_repeat Simple_repeat 1 41 0 1520 180 6 40 chrX 5238509 5238836 -157361094 + LTR8 LTR ERV1 1 316 -375 1163 104 0 0 chrX 5238869 5239032 -157360898 + LTR8 LTR ERV1 526 688 -3 1206 223 177 9 chrX 5239437 5240003 -157359927 + L1ME2 LINE L1 5198 5851 -313 780 234 9 22 chrX 5240029 5240255 -157359675 + L1ME2 LINE L1 5923 6145 -19 771 124 99 0 chrX 5240543 5240684 -157359246 + FLAM_C SINE Alu 1 153 0 2472 46 23 0 chrX 5241678 5241982 -157357948 - AluY SINE Alu 0 311 1 527 83 83 12 chrX 5242043 5242211 -157357719 + (TAGA)n Simple_repeat Simple_repeat 1 180 0 493 73 85 24 chrX 5242224 5242389 -157357541 + (TAGA)n Simple_repeat Simple_repeat 1 175 0 438 259 83 105 chrX 5242389 5242941 -157356989 + MER34 LTR ERV1 1 540 -2 587 215 0 6 chrX 5242952 5243115 -157356815 + (TAGA)n Simple_repeat Simple_repeat 1 162 0 2021 127 34 3 chrX 5243610 5243902 -157356028 + AluJo SINE Alu 6 306 -6 218 319 21 106 chrX 5243906 5244047 -157355883 + MIR3 SINE MIR 3 131 -77 2224 117 3 0 chrX 5244541 5244839 -157355091 + AluSx SINE Alu 1 299 -13 24 0 0 0 chrX 5246137 5246161 -157353769 + AT_rich Low_complexity Low_complexity 1 24 0 1289 202 8 4 chrX 5246175 5246413 -157353517 - AluJb SINE Alu -73 239 1 359 167 97 0 chrX 5246520 5246592 -157353338 - MER5B DNA MER1_type 0 178 100 273 143 0 18 chrX 5247003 5247059 -157352871 - MLT2B3 LTR ERVL 0 554 500 201 39 0 0 chrX 5247060 5247086 -157352844 + (GA)n Simple_repeat Simple_repeat 1 26 0 336 77 0 0 chrX 5247100 5247152 -157352778 + (CATA)n Simple_repeat Simple_repeat 2 53 0 2391 83 0 0 chrX 5247154 5247455 -157352475 + AluY SINE Alu 4 304 -7 364 128 11 69 chrX 5247509 5247697 -157352233 + (TAGA)n Simple_repeat Simple_repeat 3 179 0 569 89 13 68 chrX 5247742 5248124 -157351806 + (TAGA)n Simple_repeat Simple_repeat 1 360 0 2265 228 23 2 chrX 5248124 5248653 -157351277 - MLT2B3 LTR ERVL -19 506 1 1681 163 8 73 chrX 5248907 5249306 -157350624 + L1MB3 LINE L1 5767 6139 -44 846 180 0 0 chrX 5249313 5249452 -157350478 + FRAM SINE Alu 13 151 -25 308 21 0 21 chrX 5249461 5249508 -157350422 + L1MB4 LINE L1 6128 6173 -7 427 226 32 106 chrX 5249762 5250145 -157349785 + MER34 LTR ERV1 216 542 0 3492 109 25 15 chrX 5250253 5250775 -157349155 - MER1A DNA MER1_type 0 527 1 354 370 68 48 chrX 5252080 5252461 -157347469 + L2 LINE L2 2681 3063 -209 2138 133 3 0 chrX 5252816 5253124 -157346806 + AluSx SINE Alu 1 309 -3 3537 143 11 24 chrX 5254024 5254686 -157345244 - MER39B LTR ERV1 0 653 1 32 26 0 0 chrX 5255095 5255134 -157344796 + AT_rich Low_complexity Low_complexity 1 39 0 1049 156 0 0 chrX 5255146 5255300 -157344630 - AluSg/x SINE Alu -32 278 125 2324 192 36 2 chrX 5255417 5255774 -157344156 + L1MA9 LINE L1 5797 6177 -135 234 0 0 0 chrX 5255774 5255800 -157344130 + (TAA)n Simple_repeat Simple_repeat 2 27 0 2324 192 36 2 chrX 5255800 5255936 -157343994 + L1MA9 LINE L1 6177 6307 -5 278 304 35 26 chrX 5256781 5257011 -157342919 + L1ME LINE L1 4488 4719 -1427 449 326 113 53 chrX 5257022 5257274 -157342656 + L1ME LINE L1 4759 4995 -1169 2062 119 10 19 chrX 5257274 5257584 -157342346 + AluSx SINE Alu 2 308 -4 449 326 113 53 chrX 5257584 5258157 -157341773 + L1ME LINE L1 4995 5634 -530 1255 140 8 86 chrX 5258326 5258569 -157341361 + AluJo SINE Alu 86 309 -3 427 161 0 86 chrX 5258695 5258776 -157341154 + FLAM_A SINE Alu 37 110 -32 396 0 0 0 chrX 5258782 5258826 -157341104 + (CAAAA)n Simple_repeat Simple_repeat 2 45 0 189 0 0 0 chrX 5259611 5259632 -157340298 + (A)n Simple_repeat Simple_repeat 1 21 0 1728 153 0 0 chrX 5260365 5260724 -157339206 - L1PB4 LINE L1 -19 6137 5707 * 3545 206 37 50 chrX 5260714 5261692 -157338238 + L1MA5 LINE L1 5336 6300 0 21 36 0 0 chrX 5261934 5261962 -157337968 + AT_rich Low_complexity Low_complexity 1 28 0 26 30 0 0 chrX 5262489 5262522 -157337408 + AT_rich Low_complexity Low_complexity 1 33 0 1754 128 36 32 chrX 5263078 5263359 -157336571 - THE1B LTR MaLR 0 364 83 697 122 0 0 chrX 5263360 5263458 -157336472 + AluJb SINE Alu 11 108 -204 276 100 0 0 chrX 5263461 5263501 -157336429 + (CA)n Simple_repeat Simple_repeat 2 41 0 430 253 0 0 chrX 5263637 5263724 -157336206 - MIR SINE MIR -103 159 73 2170 217 35 2 chrX 5263733 5264217 -157335713 - L1MC3 LINE L1 -10 7775 7276 496 156 31 10 chrX 5264217 5264313 -157335617 + MER4A LTR ERV1 1 98 -566 1970 122 3 22 chrX 5264313 5264665 -157335265 + MER4A LTR ERV1 261 664 0 879 72 171 40 chrX 5264670 5264693 -157335237 + MER4A-int LTR ERV1 3 22 -6576 3647 92 17 31 chrX 5264693 5265213 -157334717 + LTR10D LTR ERV1 1 513 0 879 72 171 40 chrX 5265213 5265341 -157334589 + MER4A-int LTR ERV1 22 174 -6424 394 227 11 0 chrX 5265341 5265429 -157334501 - L1MC3 LINE L1 -503 7282 7194 232 233 0 33 chrX 5265433 5265493 -157334437 - MLT1F1 LTR MaLR -443 124 67 249 298 12 12 chrX 5265741 5265825 -157334105 - L2 LINE L2 -211 3061 2978 1688 179 0 11 chrX 5266167 5266482 -157333448 - AluJo SINE Alu 0 312 1 276 216 72 54 chrX 5266723 5266834 -157333096 + L1MC/D LINE L1 5648 5760 -2048 507 178 0 0 chrX 5266834 5266935 -157332995 + GA-rich Low_complexity Low_complexity 2 102 0 575 171 6 12 chrX 5267651 5267811 -157332119 + GA-rich Low_complexity Low_complexity 1 159 0 356 279 154 48 chrX 5268434 5268764 -157331166 - L2 LINE L2 -388 2926 2562 2354 114 0 0 chrX 5268880 5269187 -157330743 - AluSx SINE Alu -5 307 1 1656 157 27 13 chrX 5269294 5269594 -157330336 + L1MA7 LINE L1 5985 6288 -3 1508 147 47 36 chrX 5269600 5269879 -157330051 + AluJo SINE Alu 1 282 -30 24 32 0 0 chrX 5269879 5269910 -157330020 + AT_rich Low_complexity Low_complexity 1 31 0 1266 199 22 36 chrX 5270901 5271177 -157328753 + AluJo SINE Alu 41 312 0 893 208 99 121 chrX 5271410 5271603 -157328327 + MLT1D LTR MaLR 3 199 -306 3297 148 10 2 chrX 5271603 5272118 -157327812 + L1PA15 LINE L1 5634 6152 -13 893 208 99 121 chrX 5272118 5272438 -157327492 + MLT1D LTR MaLR 199 505 0 689 239 71 49 chrX 5272440 5272798 -157327132 - L2 LINE L2 -172 3141 2770 321 200 29 0 chrX 5272813 5272883 -157327047 - MER20 DNA MER1_type -71 148 77 386 313 79 75 chrX 5272898 5273176 -157326754 - L2 LINE L2 -586 2728 2450 588 255 6 25 chrX 5273493 5273650 -157326280 + MER5B DNA MER1_type 2 155 -23 724 230 141 5 chrX 5273694 5273885 -157326045 + MER20 DNA MER1_type 2 218 -1 972 184 22 83 chrX 5274531 5274759 -157325171 + MER20 DNA MER1_type 5 218 -1 443 250 87 0 chrX 5275173 5275277 -157324653 - MER81 DNA DNA 0 114 2 2269 103 0 3 chrX 5275986 5276286 -157323644 + AluSx SINE Alu 1 299 -13 237 180 0 0 chrX 5276547 5276597 -157323333 + (CATA)n Simple_repeat Simple_repeat 3 52 0 234 152 0 0 chrX 5276704 5276737 -157323193 - Alu SINE Alu -16 117 85 348 83 0 0 chrX 5277560 5277608 -157322322 + (GA)n Simple_repeat Simple_repeat 1 48 0 258 32 0 0 chrX 5278000 5278031 -157321899 + (TAA)n Simple_repeat Simple_repeat 3 33 0 1945 169 16 27 chrX 5278895 5279157 -157320773 - MLT1A1 LTR MaLR -2 363 105 3750 84 2 0 chrX 5279157 5279609 -157320321 - MLT2A2 LTR ERVL 0 453 1 1945 169 16 27 chrX 5279609 5279713 -157320217 - MLT1A1 LTR MaLR -260 105 1 1645 153 16 39 chrX 5280199 5280507 -157319423 - AluJb SINE Alu -11 301 1 1426 182 87 0 chrX 5281491 5281777 -157318153 + AluJo SINE Alu 1 311 -1 468 270 16 24 chrX 5283007 5283133 -157316797 + MER94 DNA DNA 10 134 0 2623 102 25 25 chrX 5283255 5283619 -157316311 - THE1B LTR MaLR 0 364 1 625 269 8 95 chrX 5283772 5283797 -157316133 + LTR52 LTR ERVL 1 27 -394 1712 182 0 10 chrX 5283797 5284094 -157315836 - AluJo SINE Alu -18 294 1 625 269 8 95 chrX 5284094 5284310 -157315620 + LTR52 LTR ERVL 27 221 -200 1596 254 91 9 chrX 5284861 5285310 -157314620 - MLT1E LTR MaLR -12 581 96 634 223 153 0 chrX 5285491 5285693 -157314237 - MER106A DNA MER1_type 0 236 4 598 329 40 0 chrX 5285696 5285918 -157314012 + MIR SINE MIR 20 250 -12 193 209 30 0 chrX 5286340 5286407 -157313523 + (TCCA)n Simple_repeat Simple_repeat 1 69 0 338 294 0 9 chrX 5286425 5286534 -157313396 + (TTCA)n Simple_repeat Simple_repeat 2 109 0 560 162 0 58 chrX 5286534 5286725 -157313205 + (TCCA)n Simple_repeat Simple_repeat 1 180 0 477 249 7 12 chrX 5286793 5287241 -157312689 + (TCCA)n Simple_repeat Simple_repeat 1 445 0 242 217 0 0 chrX 5288400 5288446 -157311484 - L3b LINE CR1 -196 1387 1342 2807 97 19 13 chrX 5288584 5288957 -157310973 + THE1C LTR MaLR 1 375 0 306 164 0 66 chrX 5289282 5289343 -157310587 - MER116 DNA Mariner -1 79 23 1188 178 5 0 chrX 5289722 5289949 -157309981 + AluJo SINE Alu 87 314 0 732 207 67 0 chrX 5289949 5290113 -157309817 - MLT1D LTR MaLR -330 175 1 1565 176 40 29 chrX 5290287 5290565 -157309365 - AluJo SINE Alu -31 281 1 1592 210 36 15 chrX 5290567 5290896 -157309034 + MLT1D LTR MaLR 169 504 -1 874 122 0 46 chrX 5290974 5291105 -157308825 + FLAM_C SINE Alu 1 125 -8 27 0 0 0 chrX 5291105 5291132 -157308798 + AT_rich Low_complexity Low_complexity 1 27 0 8087 98 6 15 chrX 5291161 5292238 -157307692 + MER11C LTR ERVK 1 1067 -4 288 242 15 15 chrX 5292568 5292634 -157307296 + MER81 DNA DNA 2 67 -47 204 291 23 47 chrX 5292769 5292855 -157307075 - L2 LINE L2 0 3272 3189 257 222 0 0 chrX 5292944 5292998 -157306932 + L1MC4 LINE L1 6650 6703 -1339 220 186 51 23 chrX 5293149 5293372 -157306558 + (TA)n Simple_repeat Simple_repeat 1 229 0 * 307 220 38 23 chrX 5293354 5293486 -157306444 + (TTATA)n Simple_repeat Simple_repeat 5 138 0 183 286 18 0 chrX 5294369 5294425 -157305505 + MIR SINE MIR 77 133 -129 222 286 98 38 chrX 5294784 5294917 -157305013 + MIR SINE MIR 29 169 -93 319 221 0 15 chrX 5295068 5295136 -157304794 + MER5A DNA MER1_type 14 80 -109 861 143 0 15 chrX 5295143 5295276 -157304654 + FRAM SINE Alu 24 154 -22 569 139 7 131 chrX 5295276 5295413 -157304517 + MER5A DNA MER1_type 60 179 -10 22 0 0 0 chrX 5295719 5295741 -157304189 + AT_rich Low_complexity Low_complexity 1 22 0 1815 171 0 7 chrX 5295741 5296050 -157303880 - AluJb SINE Alu -5 307 1 880 248 103 31 chrX 5297113 5297649 -157302281 + MLT1E1 LTR MaLR 1 654 0 2823 102 3 3 chrX 5297828 5298192 -157301738 + THE1B LTR MaLR 1 364 0 2586 130 75 0 chrX 5298534 5298935 -157300995 - MSTB1 LTR MaLR -1 431 1 1659 211 18 46 chrX 5299324 5299760 -157300170 - LTR37A LTR ERV1 -2 424 1 1772 164 0 35 chrX 5299891 5300202 -157299728 + AluJo SINE Alu 1 300 -12 2333 208 32 75 chrX 5300255 5300920 -157299010 - MER92B LTR ERV1 0 636 1 2935 122 9 14 chrX 5301397 5301833 -157298097 + MER57B LTR ERV1 1 434 0 1128 201 20 108 chrX 5302087 5302455 -157297475 - MLT1A1 LTR MaLR -1 625 280 2222 106 0 7 chrX 5302455 5302756 -157297174 - AluSx SINE Alu -13 299 1 1128 201 20 108 chrX 5302756 5302993 -157296937 - MLT1A1 LTR MaLR -346 280 24 666 232 38 38 chrX 5303001 5303186 -157296744 - MLT1E2 LTR MaLR -194 432 248 226 287 74 74 chrX 5303185 5303415 -157296515 + MARNA DNA Mariner 341 570 -16 * 756 212 55 84 chrX 5303518 5303862 -157296068 + LTR37A LTR ERV1 27 360 -66 1061 260 157 54 chrX 5304407 5304941 -157294989 + MER69 DNA AcHobo 213 801 -1725 385 264 31 16 chrX 5304942 5305071 -157294859 + MER69 DNA AcHobo 2017 2147 -379 342 215 0 0 chrX 5305214 5305279 -157294651 + MER92C LTR ERV1 1 65 -489 3248 104 18 2 chrX 5305296 5305739 -157294191 - L1PA16 LINE L1 0 6166 5717 308 235 15 0 chrX 5306001 5306069 -157293861 + MER92C LTR ERV1 484 552 -2 1123 137 5 58 chrX 5306964 5307154 -157292776 + AluJb SINE Alu 107 286 -26 245 250 122 71 chrX 5307158 5307354 -157292576 + LTR48 LTR ERV1 575 780 -7 1253 201 79 0 chrX 5307475 5307729 -157292201 + AluJb SINE Alu 1 274 -38 333 0 0 0 chrX 5307751 5307788 -157292142 + (GAAAA)n Simple_repeat Simple_repeat 2 38 0 387 186 0 0 chrX 5307912 5307982 -157291948 - L1MB8 LINE L1 -1 6177 6108 1035 170 18 50 chrX 5307995 5308213 -157291717 - L1MB2 LINE L1 -2 6169 5959 216 0 0 0 chrX 5308214 5308238 -157291692 + (TCCCC)n Simple_repeat Simple_repeat 4 27 0 1229 24 30 6 chrX 5308248 5308416 -157291514 + (TTTC)n Simple_repeat Simple_repeat 1 172 0 2154 108 0 0 chrX 5308421 5308698 -157291232 - AluSx SINE Alu -35 277 1 1331 185 39 8 chrX 5309096 5309355 -157290575 + L1MB2 LINE L1 5587 5853 -318 368 177 8 32 chrX 5309531 5309607 -157290323 + MER21B LTR ERV1 34 136 -469 448 268 51 22 chrX 5309646 5309784 -157290146 + MER21B LTR ERV1 98 239 -624 836 178 16 0 chrX 5309887 5310016 -157289914 - FLAM_C SINE Alu -11 132 2 853 266 83 66 chrX 5310179 5310407 -157289523 - L1ME2 LINE L1 -19 6145 5922 683 216 61 17 chrX 5310407 5310588 -157289342 - MER53 DNA DNA 0 189 1 853 266 83 66 chrX 5310588 5310841 -157289089 - L1ME2 LINE L1 -242 5922 5656 264 188 34 17 chrX 5310845 5311021 -157288909 + (TCTA)n Simple_repeat Simple_repeat 2 180 0 363 117 49 31 chrX 5311032 5311194 -157288736 + (TCTA)n Simple_repeat Simple_repeat 2 166 0 441 113 21 21 chrX 5311244 5311341 -157288589 + (TCTA)n Simple_repeat Simple_repeat 1 97 0 271 320 160 16 chrX 5311375 5311762 -157288168 + L2 LINE L2 2451 2893 -421 2234 92 0 0 chrX 5311763 5312083 -157287847 - AluSx SINE Alu 0 320 1 1916 153 0 7 chrX 5312369 5312670 -157287260 - AluJb SINE Alu -13 299 1 2005 174 26 3 chrX 5312671 5313015 -157286915 - MER47A DNA MER2_type -6 360 9 210 261 15 0 chrX 5314055 5314120 -157285810 + GA-rich Low_complexity Low_complexity 1 66 0 223 191 0 0 chrX 5314625 5314667 -157285263 + T-rich Low_complexity Low_complexity 1 42 0 219 351 54 0 chrX 5314822 5314933 -157284997 + L2 LINE L2 3197 3313 0 1664 232 27 2 chrX 5316934 5317392 -157282538 + MLT2B1 LTR ERVL 3 515 0 3451 133 27 2 chrX 5317583 5318109 -157281821 - MER41C LTR ERV1 -2 552 14 2182 107 0 0 chrX 5318492 5318803 -157281127 - AluSx SINE Alu 0 312 2 458 184 149 0 chrX 5319201 5319288 -157280642 - MER20 DNA MER1_type 0 219 120 201 74 0 0 chrX 5319932 5319959 -157279971 + (TG)n Simple_repeat Simple_repeat 2 28 0 1981 118 76 0 chrX 5320028 5320317 -157279613 - AluSx SINE Alu -1 311 1 232 175 19 155 chrX 5320836 5320939 -157278991 + L1MC4 LINE L1 6615 6703 -1339 202 162 27 0 chrX 5320940 5320977 -157278953 + (TA)n Simple_repeat Simple_repeat 1 38 0 1854 144 10 10 chrX 5321141 5321440 -157278490 - AluJo SINE Alu -9 303 5 463 303 37 31 chrX 5324117 5324440 -157275490 + L1ME4a LINE L1 5600 5924 -197 601 184 18 110 chrX 5324440 5324539 -157275391 - MER5A DNA MER1_type -28 161 81 1850 158 10 7 chrX 5324539 5324842 -157275088 - AluSx SINE Alu -8 304 1 601 184 18 110 chrX 5324842 5324905 -157275025 - MER5A DNA MER1_type -108 81 14 2702 185 53 42 chrX 5325038 5325116 -157274814 + L1MB5 LINE L1 5541 5617 -557 1762 165 28 92 chrX 5325116 5325516 -157274414 - MLT1A2 LTR MaLR 0 374 1 2702 185 53 42 chrX 5325516 5325564 -157274366 + L1MB5 LINE L1 5617 5663 -511 324 70 0 0 chrX 5325564 5325607 -157274323 + (TG)n Simple_repeat Simple_repeat 2 44 0 236 54 54 0 chrX 5325606 5325643 -157274287 + (TCTA)n Simple_repeat Simple_repeat 4 42 0 * 2702 185 53 42 chrX 5325607 5326141 -157273789 + L1MB5 LINE L1 5663 6173 -1 249 308 77 29 chrX 5326141 5326245 -157273685 + MER5B DNA MER1_type 61 169 -9 312 265 0 12 chrX 5326394 5326477 -157273453 + MER5A DNA MER1_type 13 94 -95 2132 200 48 30 chrX 5326726 5326934 -157272996 - MER66B LTR ERV1 0 486 283 2024 134 7 0 chrX 5326934 5327232 -157272698 - AluSx SINE Alu -11 301 2 2132 200 48 30 chrX 5327232 5327497 -157272433 - MER66B LTR ERV1 -203 283 4 986 221 160 19 chrX 5328178 5328441 -157271489 - AluSg SINE Alu 0 300 1 1013 220 77 10 chrX 5329143 5329352 -157270578 + MER58A DNA MER1_type 2 224 0 193 29 29 29 chrX 5330578 5330613 -157269317 + (CAAAAA)n Simple_repeat Simple_repeat 2 36 0 729 212 0 14 chrX 5330705 5330851 -157269079 - MER58B DNA MER1_type -1 340 197 328 266 261 5 chrX 5332523 5332730 -157267200 - MIR SINE MIR 0 262 3 1093 202 5 14 chrX 5332742 5332960 -157266970 - MER20 DNA MER1_type -3 216 1 271 246 16 0 chrX 5332960 5333021 -157266909 + MER116 DNA Mariner 4 65 -15 421 114 51 0 chrX 5334164 5334243 -157265687 - L1MD2 LINE L1 0 6359 6277 1075 227 18 0 chrX 5334253 5334473 -157265457 + L1MD1 LINE L1 5918 6141 -101 * 3456 197 67 9 chrX 5334470 5335313 -157264617 - L1M4 LINE L1 -4127 2517 1533 313 262 60 99 chrX 5335689 5335761 -157264169 - L1 LINE L1 -1672 4474 4401 1796 145 0 48 chrX 5335761 5336100 -157263830 - AluJb SINE Alu 0 312 6 313 262 60 99 chrX 5336100 5336279 -157263651 - L1 LINE L1 -1745 4401 4233 326 286 38 0 chrX 5336384 5336517 -157263413 - MER103 DNA DNA -4 162 25 1088 173 72 61 chrX 5337494 5337696 -157262234 - MER58B DNA MER1_type -2080 340 133 1956 131 14 0 chrX 5337696 5337978 -157261952 - AluSx SINE Alu -21 291 6 1088 173 72 61 chrX 5337978 5338053 -157261877 - MER58B DNA MER1_type -2287 133 60 305 284 37 9 chrX 5338100 5338209 -157261721 + L1ME4a LINE L1 5808 5919 -202 1670 164 3 16 chrX 5338881 5339185 -157260745 - AluJb SINE Alu -12 300 1 404 347 46 6 chrX 5339922 5340040 -157259890 - MIR SINE MIR -34 228 99 261 0 0 0 chrX 5340040 5340069 -157259861 + (CAAA)n Simple_repeat Simple_repeat 2 30 0 404 347 46 6 chrX 5340069 5340123 -157259807 - MIR SINE MIR -163 99 49 1278 199 14 0 chrX 5341442 5341658 -157258272 + MER20 DNA MER1_type 1 219 0 1870 141 17 20 chrX 5342612 5342910 -157257020 - AluJb SINE Alu -15 297 1 880 184 60 0 chrX 5344487 5344655 -157255275 - L1MB7 LINE L1 0 6184 6007 1425 177 8 0 chrX 5344678 5344938 -157254992 - L1MB7 LINE L1 -352 5826 5565 292 253 110 34 chrX 5345019 5345165 -157254765 + L2 LINE L2 1882 2038 -1276 262 286 43 0 chrX 5345641 5345711 -157254219 + L2 LINE L2 3196 3268 -4 227 164 77 10 chrX 5345717 5345744 -157254186 + (TA)n Simple_repeat Simple_repeat 1 25 -86 2715 233 51 19 chrX 5345744 5346376 -157253554 + MER82 DNA MER2_type 1 652 -1 227 164 77 10 chrX 5346376 5346452 -157253478 + (TA)n Simple_repeat Simple_repeat 25 111 0 * 276 185 33 82 chrX 5346378 5346562 -157253368 + (TATAA)n Simple_repeat Simple_repeat 5 179 0 * 281 241 51 6 chrX 5346437 5346595 -157253335 + (TTATA)n Simple_repeat Simple_repeat 5 169 0 2216 118 14 35 chrX 5346632 5346978 -157252952 - THE1B LTR MaLR 0 364 26 6086 124 2 5 chrX 5346978 5348056 -157251874 + L1PB1 LINE L1 5019 6094 -57 259 163 0 0 chrX 5348074 5348117 -157251813 - THE1B LTR MaLR -332 43 1 225 279 13 0 chrX 5348128 5348207 -157251723 + (TA)n Simple_repeat Simple_repeat 1 80 0 397 329 83 45 chrX 5348303 5348701 -157251229 + L2 LINE L2 2365 2777 -537 2347 89 0 10 chrX 5349885 5350232 -157249698 - AluY SINE Alu 0 344 1 237 33 0 0 chrX 5350672 5350702 -157249228 + (CA)n Simple_repeat Simple_repeat 1 30 0 5808 74 4 1 chrX 5353969 5354683 -157245247 + L1PA10 LINE L1 5450 6165 -3 1764 180 0 3 chrX 5355145 5355428 -157244502 + AluJo SINE Alu 1 282 -30 225 0 0 0 chrX 5355435 5355460 -157244470 + (CAAA)n Simple_repeat Simple_repeat 2 26 0 254 302 78 31 chrX 5356409 5356538 -157243392 + MIR SINE MIR 78 212 -50 360 308 52 28 chrX 5356612 5356862 -157243068 - L1ME LINE L1 -297 5824 5569 353 286 43 9 chrX 5357929 5358064 -157241866 - L1MD2 LINE L1 0 6242 6106 1689 141 17 44 chrX 5358271 5358603 -157241327 - AluJo SINE Alu 0 312 1 1106 213 15 0 chrX 5358609 5358811 -157241119 - MER58A DNA MER1_type -15 209 5 1909 127 40 3 chrX 5358943 5359243 -157240687 + AluSx SINE Alu 1 311 -1 276 100 0 0 chrX 5359243 5359283 -157240647 + (GA)n Simple_repeat Simple_repeat 1 40 0 239 132 38 0 chrX 5359418 5359471 -157240459 + (CCTA)n Simple_repeat Simple_repeat 3 57 0 24 67 0 0 chrX 5559616 5559661 -157040269 + AT_rich Low_complexity Low_complexity 1 45 0 2450 35 3 7 chrX 5559721 5560006 -157039924 - AluY SINE Alu -21 290 7 315 27 0 0 chrX 5560045 5560082 -157039848 - MLT1D LTR MaLR -9 617 581 583 180 148 8 chrX 5560105 5560233 -157039697 - MLT1D LTR MaLR -118 387 242 3137 230 51 33 chrX 5560247 5561450 -157038480 - L1M4c LINE L1 -3113 3269 2005 261 0 0 0 chrX 5562432 5562461 -157037469 + (CA)n Simple_repeat Simple_repeat 2 30 0 1836 138 3 43 chrX 5562469 5562774 -157037156 - AluJo SINE Alu -19 293 1 1370 260 94 34 chrX 5563540 5564093 -157035837 - L1ME1 LINE L1 -5 6161 5576 1129 160 73 12 chrX 5564101 5564534 -157035396 - MLT1D LTR MaLR 0 505 1 585 228 60 88 chrX 5564541 5564826 -157035104 - L1ME1 LINE L1 -849 5297 5021 213 222 0 0 chrX 5565797 5565842 -157034088 + L2 LINE L2 3264 3308 -5 536 191 19 0 chrX 5566599 5566704 -157033226 - MSTA LTR MaLR 0 428 322 4512 190 34 2 chrX 5566704 5567551 -157032379 - MSTB-int LTR MaLR -777 874 1 1986 188 46 17 chrX 5567551 5567965 -157031965 - MSTB LTR MaLR 0 426 1 1207 190 46 8 chrX 5568380 5568643 -157031287 + MER89 LTR ERV1 287 559 0 709 215 26 52 chrX 5569968 5570080 -157029850 - MER5A DNA MER1_type 0 189 83 2473 124 20 59 chrX 5570080 5570294 -157029636 + MSTC LTR MaLR 4 194 -234 2070 124 3 25 chrX 5570294 5570609 -157029321 + AluSg SINE Alu 1 308 -2 2473 124 20 59 chrX 5570609 5570836 -157029094 + MSTC LTR MaLR 194 428 0 709 215 26 52 chrX 5570836 5570914 -157029016 - MER5A DNA MER1_type -106 83 4 1666 158 50 4 chrX 5571711 5571990 -157027940 + AluJb SINE Alu 1 292 -20 656 269 92 9 chrX 5572284 5572511 -157027419 - MER46C DNA MER2_type 0 338 93 207 154 185 62 chrX 5574359 5574424 -157025506 + L3b LINE CR1 1293 1365 -218 481 248 10 4 chrX 5574668 5574799 -157025131 - MLT1A2 LTR MaLR 0 374 260 232 211 0 18 chrX 5574820 5574877 -157025053 - MLT1C LTR MaLR -409 58 3 224 155 0 35 chrX 5576205 5576263 -157023667 + (TCCA)n Simple_repeat Simple_repeat 2 57 0 415 240 87 37 chrX 5578631 5578829 -157021101 - MER106B DNA MER1_type 0 1059 30 207 0 0 0 chrX 5580308 5580331 -157019599 + (T)n Simple_repeat Simple_repeat 1 23 0 1645 163 7 17 chrX 5581072 5581366 -157018564 - AluJb SINE Alu -21 291 1 664 191 13 126 chrX 5582253 5582483 -157017447 + Charlie1 DNA MER1_type 2157 2360 -401 442 143 0 0 chrX 5582494 5582564 -157017366 - AluSg/x SINE Alu -67 243 174 2040 144 15 21 chrX 5583776 5584115 -157015815 - MER1B DNA MER1_type 0 337 1 201 241 0 0 chrX 5584282 5584336 -157015594 + (CA)n Simple_repeat Simple_repeat 1 54 0 2659 92 5 19 chrX 5585162 5585531 -157014399 + THE1B LTR MaLR 1 364 0 2672 229 75 55 chrX 5587604 5588687 -157011243 + L1M4 LINE L1 2626 3729 -2417 579 284 21 0 chrX 5588702 5588896 -157011034 + Charlie7 DNA MER1_type 1932 2129 -483 1090 115 19 0 chrX 5588928 5589084 -157010846 + AluSg/x SINE Alu 142 300 -12 531 239 139 23 chrX 5589116 5589307 -157010623 + Charlie7 DNA MER1_type 2219 2386 -226 1545 198 27 3 chrX 5589307 5589600 -157010330 - AluJo SINE Alu -12 300 1 531 239 139 23 chrX 5589600 5589760 -157010170 + Charlie7 DNA MER1_type 2386 2611 -1 195 258 65 0 chrX 5589876 5589938 -157009992 + MIR SINE MIR 108 173 -89 829 270 88 18 chrX 5591018 5591373 -157008557 + MLT1C LTR MaLR 6 467 0 1982 134 40 0 chrX 5591765 5592064 -157007866 + AluSx SINE Alu 1 311 -1 183 194 0 0 chrX 5592768 5592804 -157007126 + L2 LINE L2 3265 3300 -13 846 209 25 0 chrX 5592839 5593035 -157006895 + L1MA8 LINE L1 6091 6291 0 2223 183 85 14 chrX 5593911 5594418 -157005512 + MER67A LTR ERV1 1 543 0 1441 204 90 26 chrX 5595238 5595659 -157004271 + MLT1C LTR MaLR 20 467 0 525 178 112 9 chrX 5596391 5596498 -157003432 - AluSq/x SINE Alu -176 136 19 428 342 55 0 chrX 5597760 5597962 -157001968 + MER58B DNA MER1_type 87 299 -42 26 0 0 0 chrX 5598551 5598577 -157001353 + AT_rich Low_complexity Low_complexity 1 26 0 1855 144 0 46 chrX 5599859 5600164 -156999766 - AluJb SINE Alu -13 299 9 2423 89 3 0 chrX 5600614 5600918 -156999012 + AluSx SINE Alu 1 305 -7 854 128 8 0 chrX 5602180 5602305 -156997625 - FLAM_C SINE Alu -17 126 1 744 199 11 40 chrX 5602307 5602483 -156997447 + AluJo/FRAM SINE Alu 142 312 0 1992 265 73 33 chrX 5603117 5603308 -156996622 + MER21B LTR ERV1 1 183 -680 2311 82 0 0 chrX 5603308 5603613 -156996317 + AluSg SINE Alu 3 307 0 1992 265 73 33 chrX 5603613 5604122 -156995808 + MER21B LTR ERV1 183 730 -133 218 54 0 27 chrX 5604212 5604249 -156995681 + (CAAAA)n Simple_repeat Simple_repeat 2 37 0 242 253 53 0 chrX 5605115 5605190 -156994740 + MER20 DNA MER1_type 124 202 -17 2157 123 0 35 chrX 5606513 5606831 -156993099 + AluSx SINE Alu 1 307 -5 216 195 0 0 chrX 5610165 5610206 -156989724 + (TG)n Simple_repeat Simple_repeat 2 42 0 273 282 55 0 chrX 5610573 5610683 -156989247 + MER103 DNA DNA 3 118 -48 201 343 23 9 chrX 5610804 5610943 -156988987 + MIR SINE MIR 46 191 -17 4240 73 18 0 chrX 5610976 5611520 -156988410 - MER41A LTR ERV1 0 554 1 216 0 0 0 chrX 5611807 5611831 -156988099 + (CAAA)n Simple_repeat Simple_repeat 2 25 0 2984 199 101 55 chrX 5611834 5613018 -156986912 + L1ME2 LINE L1 4837 6112 -52 2116 144 71 32 chrX 5613069 5613582 -156986348 + MLT2A2 LTR ERVL 1 554 0 304 347 143 23 chrX 5613932 5614364 -156985566 - L2 LINE L2 -2601 713 230 238 236 75 47 chrX 5614386 5614492 -156985438 + MLT1J LTR MaLR 403 511 0 234 105 0 0 chrX 5614779 5614817 -156985113 + (TATG)n Simple_repeat Simple_repeat 2 39 0 225 143 41 0 chrX 5614835 5614884 -156985046 + (TCTA)n Simple_repeat Simple_repeat 4 54 0 335 257 88 20 chrX 5615675 5615823 -156984107 - HAL1b LINE L1 -531 817 660 461 289 115 26 chrX 5615850 5615964 -156983966 - HAL1b LINE L1 -755 593 491 2159 164 40 17 chrX 5615964 5616385 -156983545 + MSTB1 LTR MaLR 1 431 -1 461 289 115 26 chrX 5616385 5616661 -156983269 - HAL1b LINE L1 -857 491 168 201 208 0 21 chrX 5619046 5619094 -156980836 + (TTTA)n Simple_repeat Simple_repeat 1 47 0 1654 150 11 14 chrX 5619115 5619395 -156980535 - AluJo SINE Alu -16 296 18 2205 147 16 16 chrX 5619538 5619925 -156980005 + MLT1B LTR MaLR 1 387 -3 609 168 0 9 chrX 5622039 5622152 -156977778 - FLAM_A SINE Alu -1 141 30 642 228 26 24 chrX 5622760 5622932 -156976998 - L1M4 LINE L1 -438 5740 5571 325 287 11 0 chrX 5623098 5623185 -156976745 + L2 LINE L2 3139 3226 -46 2479 131 22 22 chrX 5623373 5623778 -156976152 + MSTB1 LTR MaLR 28 432 0 1728 151 96 14 chrX 5625191 5625535 -156974395 + THE1C LTR MaLR 4 375 0 293 275 78 68 chrX 5625934 5626243 -156973687 + L1MEc LINE L1 1416 1727 -4669 1881 175 34 28 chrX 5626304 5626692 -156973238 + MLT1B LTR MaLR 1 390 0 754 176 35 21 chrX 5629063 5629259 -156970671 - LTR37A LTR ERV1 -21 447 227 230 258 16 0 chrX 5629926 5629988 -156969942 + (CATATA)n Simple_repeat Simple_repeat 2 64 0 225 358 16 0 chrX 5630059 5630182 -156969748 + (TA)n Simple_repeat Simple_repeat 1 125 0 2811 94 53 5 chrX 5631295 5631709 -156968221 + L1PB2 LINE L1 5716 6149 -2 2128 117 3 16 chrX 5632204 5632511 -156967419 - AluSx SINE Alu -9 303 1 296 310 0 0 chrX 5632906 5632993 -156966937 + MER81 DNA DNA 9 95 -19 2220 133 33 33 chrX 5633534 5633896 -156966034 + THE1B LTR MaLR 3 364 0 1998 130 33 7 chrX 5634310 5634611 -156965319 + AluSx SINE Alu 1 309 -3 2281 118 0 13 chrX 5635415 5635730 -156964200 - AluSx SINE Alu -1 311 1 2069 119 0 7 chrX 5637577 5637870 -156962060 + AluSq SINE Alu 1 291 -22 608 199 21 14 chrX 5638742 5638883 -156961047 - FLAM_C SINE Alu 0 143 2 2030 187 171 79 chrX 5642478 5643360 -156956570 + L1 LINE L1 3226 4188 -1958 1358 183 39 86 chrX 5644099 5644481 -156955449 - MLT1A1 LTR MaLR -1 364 1 352 219 129 45 chrX 5645872 5646027 -156953903 + MER34 LTR ERV1 368 535 -7 2336 102 3 0 chrX 5646481 5646776 -156953154 - AluSx SINE Alu -16 296 1 2313 96 3 0 chrX 5648784 5649075 -156950855 - AluSx SINE Alu -20 292 1 475 218 192 34 chrX 5649234 5649468 -156950462 + L1MEc LINE L1 657 927 -5469 1236 235 57 24 chrX 5649491 5649916 -156950014 + L1MEc LINE L1 2231 2669 -3546 4036 190 47 25 chrX 5650037 5651674 -156948256 - L1MB3 LINE L1 -303 5880 4211 2850 188 52 45 chrX 5652094 5652807 -156947123 - LTR62 LTR ERVK -1 718 1 657 259 56 39 chrX 5652946 5653266 -156946664 - LTR16A LTR ERVL -20 430 48 1852 44 4 18 chrX 5653798 5654025 -156945905 - AluY SINE Alu -87 224 1 229 321 28 9 chrX 5654533 5654642 -156945288 + MIR SINE MIR 2 112 -150 1423 149 12 4 chrX 5656230 5656478 -156943452 - L1MB3 LINE L1 -10 6173 5924 1402 136 0 15 chrX 5656479 5656685 -156943245 + MER51A LTR ERV1 1 203 -431 1608 167 0 74 chrX 5657063 5657374 -156942556 + AluJb SINE Alu 1 288 -24 2196 106 7 10 chrX 5657752 5658053 -156941877 - AluSx SINE Alu -12 300 1 226 130 0 56 chrX 5658802 5658856 -156941074 + L1MB3 LINE L1 6129 6179 -4 1347 77 0 22 chrX 5660234 5660417 -156939513 - THE1B LTR MaLR -185 179 1 1872 136 110 8 chrX 5660888 5661242 -156938688 - MLT1B LTR MaLR 0 390 1 30 0 0 0 chrX 5661269 5661299 -156938631 + AT_rich Low_complexity Low_complexity 1 30 0 2168 125 0 0 chrX 5662499 5662794 -156937136 - AluSx SINE Alu -17 295 1 193 290 0 16 chrX 5663875 5663937 -156935993 - L2 LINE L2 -50 3263 3203 209 32 0 32 chrX 5664816 5664847 -156935083 + (CA)n Simple_repeat Simple_repeat 1 30 0 1128 111 0 0 chrX 5664985 5665129 -156934801 + AluJb SINE Alu 1 144 -168 1517 163 0 0 chrX 5665133 5665366 -156934564 + AluSg/x SINE Alu 77 309 -3 796 224 89 77 chrX 5665739 5666091 -156933839 + MLT1D LTR MaLR 1 356 -34 188 362 86 4 chrX 5667866 5668145 -156931785 - L2 LINE L2 -1266 2048 1747 288 77 0 0 chrX 5669101 5669140 -156930790 - MADE1 DNA Mariner -41 39 1 458 320 121 37 chrX 5670328 5671300 -156928630 - L1MC4 LINE L1 -210 7832 6779 1891 84 0 4 chrX 5671478 5671715 -156928215 + AluSq SINE Alu 65 300 -13 2355 83 6 16 chrX 5671719 5672031 -156927899 + AluY SINE Alu 1 309 -2 395 304 14 0 chrX 5672521 5672659 -156927271 + L1MC5 LINE L1 7287 7426 -535 2132 138 0 0 chrX 5672832 5673129 -156926801 - AluSx SINE Alu -15 297 1 451 231 63 42 chrX 5673796 5673939 -156925991 - MER3 DNA MER1_type -63 146 1 180 0 0 0 chrX 5675134 5675154 -156924776 + (CAAAA)n Simple_repeat Simple_repeat 2 21 0 14475 129 46 11 chrX 5675192 5677099 -156922831 + Tigger1 DNA MER2_type 30 2035 -383 2232 110 0 19 chrX 5677099 5677408 -156922522 - AluSx SINE Alu -9 303 1 14475 129 46 11 chrX 5677408 5677807 -156922123 + Tigger1 DNA MER2_type 2035 2418 0 945 232 36 4 chrX 5679476 5679729 -156920201 + MER33 DNA MER1_type 1 255 -69 21 0 0 0 chrX 5680781 5680802 -156919128 + AT_rich Low_complexity Low_complexity 1 21 0 298 194 48 0 chrX 5681229 5681291 -156918639 + MIR SINE MIR 60 124 -84 198 0 0 0 chrX 5681293 5681315 -156918615 + (T)n Simple_repeat Simple_repeat 1 22 0 233 289 0 0 chrX 5681672 5681755 -156918175 - MER5A DNA MER1_type -80 109 27 728 199 33 62 chrX 5681792 5682003 -156917927 - MER20 DNA MER1_type -13 206 2 846 131 81 44 chrX 5683564 5683724 -156916206 + BC200 scRNA scRNA 2 167 -33 1676 184 143 10 chrX 5684061 5684473 -156915457 - MLT1C LTR MaLR 0 467 1 2284 105 3 3 chrX 5684671 5684977 -156914953 - AluSg SINE Alu -4 306 1 290 261 23 11 chrX 5686205 5686293 -156913637 + MER5A DNA MER1_type 16 104 -85 2438 86 0 0 chrX 5686404 5686708 -156913222 - AluY SINE Alu -7 304 1 1822 154 0 7 chrX 5686765 5687075 -156912855 - AluSx SINE Alu 0 308 1 326 262 194 16 chrX 5687151 5687342 -156912588 + Charlie7 DNA MER1_type 251 475 -2137 209 231 0 15 chrX 5687669 5687734 -156912196 + CT-rich Low_complexity Low_complexity 4 67 0 389 272 1 25 chrX 5687748 5688474 -156911456 + CT-rich Low_complexity Low_complexity 1 709 0 191 407 7 15 chrX 5688968 5689103 -156910827 - MIR SINE MIR -88 174 41 239 265 37 19 chrX 5689946 5690108 -156909822 + (TA)n Simple_repeat Simple_repeat 2 166 0 893 168 96 66 chrX 5690160 5690322 -156909608 - MER6B DNA MER2_type -655 210 39 1980 147 0 10 chrX 5690322 5690621 -156909309 + AluJb SINE Alu 1 296 -16 893 168 96 66 chrX 5690621 5690655 -156909275 - MER6B DNA MER2_type -826 39 8 197 108 27 0 chrX 5690796 5690833 -156909097 + (TA)n Simple_repeat Simple_repeat 1 38 0 293 321 47 0 chrX 5692181 5692287 -156907643 - MIR SINE MIR -124 138 28 262 291 0 0 chrX 5692480 5692566 -156907364 + C-rich Low_complexity Low_complexity 2 87 0 270 212 15 15 chrX 5692924 5692990 -156906940 - MER20 DNA MER1_type -147 72 7 2141 99 0 38 chrX 5693028 5693341 -156906589 + AluSg SINE Alu 1 301 -9 863 247 14 23 chrX 5693366 5693585 -156906345 - MER20 DNA MER1_type 0 219 3 650 272 34 67 chrX 5693915 5694095 -156905835 + MER46C DNA MER2_type 2 168 -170 1890 144 3 17 chrX 5694095 5694387 -156905543 - AluSx SINE Alu -24 288 1 650 272 34 67 chrX 5694387 5694533 -156905397 + MER46C DNA MER2_type 168 317 -21 1593 177 0 62 chrX 5694993 5695315 -156904615 + AluJb SINE Alu 7 308 -4 829 221 67 14 chrX 5695391 5695599 -156904331 - MER20 DNA MER1_type 0 219 1 1533 176 42 29 chrX 5695630 5695936 -156903994 + AluJo SINE Alu 1 310 -2 935 215 68 0 chrX 5695961 5696166 -156903764 - MER20 DNA MER1_type 0 219 1 2010 157 0 7 chrX 5696266 5696571 -156903359 - AluJb SINE Alu -9 303 1 1672 225 102 88 chrX 5697239 5697472 -156902458 - MLT1E1 LTR MaLR 0 654 426 2181 110 0 0 chrX 5697472 5697779 -156902151 - AluSx SINE Alu 0 307 1 1672 225 102 88 chrX 5697779 5697965 -156901965 - MLT1E1 LTR MaLR -228 426 244 1595 168 65 20 chrX 5697965 5698257 -156901673 - AluJo SINE Alu -7 305 1 1672 225 102 88 chrX 5698257 5698480 -156901450 - MLT1E1 LTR MaLR -410 244 1 1869 184 71 121 chrX 5699243 5699878 -156900052 - L1MB7 LINE L1 -16 6168 5566 944 199 0 0 chrX 5700715 5700871 -156899059 - AluJo SINE Alu -26 286 131 40 0 0 0 chrX 5700873 5700913 -156899017 + AT_rich Low_complexity Low_complexity 1 40 0 844 149 8 8 chrX 5700913 5701047 -156898883 - AluJo SINE Alu -177 135 2 24 0 0 0 chrX 5701047 5701071 -156898859 + AT_rich Low_complexity Low_complexity 1 24 0 493 236 55 22 chrX 5702172 5702354 -156897576 - L1MB8 LINE L1 -3 6175 5988 6358 91 6 9 chrX 5703204 5704080 -156895850 - L1PA10 LINE L1 -11 6157 5285 207 0 0 0 chrX 5705443 5705466 -156894464 + (A)n Simple_repeat Simple_repeat 1 23 0 1672 186 0 28 chrX 5705466 5705784 -156894146 + AluJb SINE Alu 1 310 0 575 278 52 62 chrX 5706514 5706772 -156893158 - Charlie2 DNA MER1_type -2497 285 29 2703 102 19 16 chrX 5706772 5707146 -156892784 - THE1C LTR MaLR 0 375 1 575 278 52 62 chrX 5707146 5707175 -156892755 - Charlie2 DNA MER1_type -2753 29 1 736 208 20 0 chrX 5707336 5707485 -156892445 - MLT1D LTR MaLR -350 155 4 254 29 29 0 chrX 5707713 5707748 -156892182 + (TA)n Simple_repeat Simple_repeat 2 37 0 1741 110 75 12 chrX 5707821 5708076 -156891854 - AluSx SINE Alu -41 271 1 1396 197 97 0 chrX 5708091 5708350 -156891580 - AluJo SINE Alu -24 288 5 1483 171 17 31 chrX 5709955 5710272 -156889658 + L1MA7 LINE L1 5932 6228 -63 3821 108 45 6 chrX 5710325 5710832 -156889098 - MER1A DNA MER1_type 0 527 1 523 192 50 0 chrX 5711445 5711544 -156888386 + L1PA16 LINE L1 6063 6166 0 1439 179 58 24 chrX 5712069 5712360 -156887570 + AluJb SINE Alu 1 301 -11 1068 163 80 72 chrX 5713102 5713366 -156886564 + MLT1C LTR MaLR 5 270 -197 269 342 0 0 chrX 5713695 5713771 -156886159 - MIR SINE MIR -136 126 51 2302 110 7 0 chrX 5713987 5714288 -156885642 + AluSq SINE Alu 1 303 -10 708 272 37 5 chrX 5714882 5715099 -156884831 - MER46C DNA MER2_type -9 329 106 764 230 143 0 chrX 5715545 5715741 -156884189 - MER58A DNA MER1_type 0 224 1 3259 173 56 45 chrX 5716234 5716944 -156882986 - LTR62 LTR ERVK -1 718 1 645 259 56 39 chrX 5717083 5717403 -156882527 - LTR16A LTR ERVL -20 430 48 361 259 22 30 chrX 5717752 5717887 -156882043 - Tigger4(Zombi) DNA MER2_type -2194 537 404 289 288 51 42 chrX 5717984 5718102 -156881828 - MER46C DNA MER2_type -217 121 3 755 256 34 0 chrX 5718594 5718770 -156881160 - MER20 DNA MER1_type -33 186 5 980 208 122 20 chrX 5719623 5719868 -156880062 - MER58B DNA MER1_type 0 341 72 232 317 92 46 chrX 5719958 5720220 -156879710 - L2 LINE L2 -72 3241 2968 3471 117 17 0 chrX 5720246 5720724 -156879206 - MER1A DNA MER1_type 0 529 44 1659 167 62 0 chrX 5720767 5721043 -156878887 + AluJb SINE Alu 1 293 -19 23 0 0 0 chrX 5721046 5721069 -156878861 + AT_rich Low_complexity Low_complexity 1 23 0 222 336 18 26 chrX 5722419 5722532 -156877398 + MIR SINE MIR 29 140 -122 2195 114 0 0 chrX 5722546 5722843 -156877087 + AluSx SINE Alu 2 298 -14 666 230 141 0 chrX 5723017 5723208 -156876722 + MER20 DNA MER1_type 2 219 0 207 0 0 0 chrX 5723641 5723664 -156876266 + (TTG)n Simple_repeat Simple_repeat 2 24 0 1842 79 0 4 chrX 5724178 5724406 -156875524 - AluSg SINE Alu -22 288 62 1298 202 65 144 chrX 5724406 5725005 -156874925 - LTR8A LTR ERV1 -142 585 34 2001 172 48 3 chrX 5725048 5725380 -156874550 - MER7A DNA MER2_type 0 346 2 1820 161 36 13 chrX 5726274 5726772 -156873158 - MER34C LTR ERV1 -2 583 35 203 301 95 70 chrX 5727011 5727423 -156872507 + L2 LINE L2 2555 2976 -338 237 299 93 28 chrX 5727555 5727592 -156872338 + L2 LINE L2 3200 3233 -80 3688 126 45 0 chrX 5727592 5728122 -156871808 - MER41C LTR ERV1 0 554 1 237 299 93 28 chrX 5728122 5728191 -156871739 + L2 LINE L2 3233 3313 0 2166 220 60 73 chrX 5728325 5729025 -156870905 - LTR8 LTR ERV1 0 691 1 21 0 0 0 chrX 5730139 5730160 -156869770 + AT_rich Low_complexity Low_complexity 1 21 0 339 25 0 0 chrX 5731213 5731253 -156868677 + (TGGA)n Simple_repeat Simple_repeat 3 42 0 184 130 43 0 chrX 5731253 5731299 -156868631 + (TAGA)n Simple_repeat Simple_repeat 4 51 0 664 166 27 0 chrX 5731312 5731537 -156868393 + (TAGA)n Simple_repeat Simple_repeat 1 231 0 727 131 0 0 chrX 5732189 5732296 -156867634 + MLT2B3 LTR ERVL 3 109 -445 618 132 2 0 chrX 5732296 5732498 -156867432 + ERVL-B3 LTR ERVL 5352 5521 -243 1482 144 16 16 chrX 5732653 5732903 -156867027 + ERVL-B3 LTR ERVL 5508 5757 -7 1306 157 30 17 chrX 5732903 5733133 -156866797 + MLT2B3 LTR ERVL 1 233 -321 444 224 0 0 chrX 5733135 5733305 -156866625 + CT-rich Low_complexity Low_complexity 1 170 0 636 268 0 0 chrX 5733341 5733479 -156866451 + MLT2B3 LTR ERVL 224 361 -193 197 160 0 20 chrX 5734008 5734058 -156865872 + (CATATA)n Simple_repeat Simple_repeat 6 54 0 1787 171 0 4 chrX 5734068 5734349 -156865581 - AluJo SINE Alu -30 282 3 310 279 82 20 chrX 5734547 5734694 -156865236 - L1ME LINE L1 -647 5474 5319 705 200 0 17 chrX 5734733 5734913 -156865017 + CT-rich Low_complexity Low_complexity 2 178 0 524 217 32 5 chrX 5734962 5735188 -156864742 + CT-rich Low_complexity Low_complexity 1 232 0 1247 170 134 50 chrX 5735847 5736173 -156863757 - AluJo SINE Alu 0 351 3 1134 270 68 31 chrX 5736173 5736750 -156863180 - HAL1 LINE L1 -929 1578 981 347 211 0 0 chrX 5736778 5736849 -156863081 + MER116 DNA Mariner 9 79 -1 1396 200 74 0 chrX 5737191 5737461 -156862469 + AluJb SINE Alu 5 294 -18 451 250 0 10 chrX 5738684 5738788 -156861142 - L1MD1 LINE L1 -8 6234 6132 263 161 18 0 chrX 5738875 5738931 -156860999 + CT-rich Low_complexity Low_complexity 3 59 0 1078 222 33 27 chrX 5738952 5739412 -156860518 - MLT1D LTR MaLR -5 500 1 22 35 0 0 chrX 5739588 5739617 -156860313 + AT_rich Low_complexity Low_complexity 1 29 0 183 189 0 0 chrX 5739623 5739676 -156860254 + (TA)n Simple_repeat Simple_repeat 2 54 0 79 44 0 0 chrX 5739688 5739802 -156860128 + AT_rich Low_complexity Low_complexity 1 114 0 347 0 0 79 chrX 5739840 5739903 -156860027 + (TTTTTA)n Simple_repeat Simple_repeat 1 58 0 5805 61 4 8 chrX 5739905 5740638 -156859292 - L1PA8A LINE L1 -1 6130 5401 275 217 0 43 chrX 5740638 5740730 -156859200 + (CATATA)n Simple_repeat Simple_repeat 2 89 0 26 0 0 0 chrX 5740730 5740756 -156859174 + AT_rich Low_complexity Low_complexity 1 26 0 436 225 40 0 chrX 5740756 5740966 -156858964 + (TA)n Simple_repeat Simple_repeat 1 218 0 23 33 0 0 chrX 5740977 5741007 -156858923 + AT_rich Low_complexity Low_complexity 1 30 0 1323 123 53 96 chrX 5741106 5741407 -156858523 - L1MA8 LINE L1 -3 6288 6001 845 255 104 9 chrX 5741437 5741760 -156858170 - MLT1E3 LTR MaLR 0 624 223 226 39 0 0 chrX 5741801 5741827 -156858103 - MLT1E3 LTR MaLR -627 27 2 2079 134 0 10 chrX 5742446 5742760 -156857170 + AluSx SINE Alu 1 311 -1 325 242 21 32 chrX 5743172 5743267 -156856663 - MER34B LTR ERV1 0 565 472 506 186 31 21 chrX 5743267 5743364 -156856566 - AluJ/FLAM SINE Alu -213 99 2 350 260 80 27 chrX 5743754 5743904 -156856026 - MER34B LTR ERV1 -403 162 5 1663 169 10 29 chrX 5744059 5744366 -156855564 + AluJb SINE Alu 1 301 -11 2923 68 5 8 chrX 5744811 5745179 -156854751 - L1PB1 LINE L1 -3 6148 5782 1021 131 11 0 chrX 5745191 5745367 -156854563 + (TA)n Simple_repeat Simple_repeat 1 178 0 225 94 0 0 chrX 5745367 5745399 -156854531 + (CA)n Simple_repeat Simple_repeat 1 32 0 1218 86 0 0 chrX 5745411 5745573 -156854357 - L1PB1 LINE L1 -360 5791 5630 400 272 75 42 chrX 5745789 5746002 -156853928 + LTR33 LTR ERVL 5 224 -297 22 0 0 0 chrX 5746574 5746596 -156853334 + AT_rich Low_complexity Low_complexity 1 22 0 1633 198 180 38 chrX 5746647 5747152 -156852778 - MER92B LTR ERV1 0 636 60 2260 160 22 33 chrX 5747152 5747603 -156852327 - MER31A LTR ERV1 0 485 40 366 183 108 11 chrX 5748162 5748255 -156851675 + ORSL DNA AcHobo 150 251 -24 742 172 140 54 chrX 5748797 5748983 -156850947 - MER31A LTR ERV1 -283 202 1 321 226 0 0 chrX 5748984 5749046 -156850884 - MER92B LTR ERV1 -573 63 2 1778 222 60 11 chrX 5749156 5749662 -156850268 + LTR69 LTR ERVL 4 581 -7 723 338 129 39 chrX 5750454 5750803 -156849127 - L3 LINE CR1 -10 1567 1251 2563 40 3 3 chrX 5750803 5751107 -156848823 - AluY SINE Alu -7 304 1 723 338 129 39 chrX 5751107 5751709 -156848221 - L3 LINE CR1 -326 1251 530 1774 182 6 56 chrX 5752139 5752515 -156847415 + MLT1A1 LTR MaLR 1 361 -4 207 0 0 0 chrX 5752788 5752811 -156847119 + (A)n Simple_repeat Simple_repeat 1 23 0 5564 133 16 19 chrX 5753015 5754064 -156845866 - L1PB4 LINE L1 0 6156 5102 239 224 77 109 chrX 5754567 5754650 -156845280 + MIR3 SINE MIR 51 128 -80 2014 191 14 3 chrX 5754650 5755011 -156844919 + MLT1A1 LTR MaLR 1 365 0 239 224 77 109 chrX 5755011 5755083 -156844847 + MIR3 SINE MIR 128 201 -7 2928 199 11 2 chrX 5755544 5756077 -156843853 - MER68 LTR ERV1 -24 538 1 3089 233 54 40 chrX 5756254 5756871 -156843059 - L1ME2 LINE L1 -1 6163 5529 1879 143 7 10 chrX 5756871 5757164 -156842766 + AluJo SINE Alu 1 292 -20 3089 233 54 40 chrX 5757164 5757536 -156842394 - L1ME2 LINE L1 -635 5529 5164 21 0 0 0 chrX 5757708 5757729 -156842201 + AT_rich Low_complexity Low_complexity 1 21 0 4678 175 23 19 chrX 5757967 5759021 -156840909 - L1MB1 LINE L1 0 6168 5113 250 309 97 27 chrX 5759068 5759327 -156840603 - L1MCa LINE L1 -5226 1200 924 1588 155 54 0 chrX 5760158 5760304 -156839626 - AluJo SINE Alu -32 280 113 216 0 0 0 chrX 5760304 5760328 -156839602 + (TTTA)n Simple_repeat Simple_repeat 2 25 0 1588 155 54 0 chrX 5760328 5760439 -156839491 - AluJo SINE Alu -199 113 9 1653 175 51 74 chrX 5760486 5760763 -156839167 + L1MB7 LINE L1 5517 5784 -400 2373 126 56 6 chrX 5760763 5761120 -156838810 - THE1C LTR MaLR 0 375 1 1653 175 51 74 chrX 5761120 5761236 -156838694 + L1MB7 LINE L1 5784 5901 -283 1144 170 95 57 chrX 5761243 5761645 -156838285 + L1MB5 LINE L1 5611 6173 -1 3216 118 4 28 chrX 5761730 5762189 -156837741 + MER83 LTR ERV1 1 448 0 1069 159 0 32 chrX 5762953 5762992 -156836938 - L1M1 LINE L1 -581 5722 5683 2196 149 10 44 chrX 5762992 5763343 -156836587 + THE1C LTR MaLR 1 339 -36 2107 106 0 0 chrX 5763343 5763617 -156836313 - AluSx SINE Alu -2 310 37 2196 149 10 44 chrX 5763617 5763653 -156836277 + THE1C LTR MaLR 339 375 0 1069 159 0 32 chrX 5763653 5763802 -156836128 - L1M1 LINE L1 -620 5683 5540 1464 190 46 21 chrX 5765750 5766034 -156833896 + AluJb SINE Alu 1 291 -21 1714 80 98 0 chrX 5766130 5766416 -156833514 - MER4-int LTR ERV1 -3548 3050 2737 1490 148 57 4 chrX 5766416 5766660 -156833270 + LTR8 LTR ERV1 1 257 -434 4714 95 62 25 chrX 5766660 5767450 -156832480 - MER4-int LTR ERV1 -4103 2495 1677 479 77 55 0 chrX 5767481 5767572 -156832358 - MER4-int LTR ERV1 -5372 1226 1131 919 131 0 29 chrX 5767572 5767709 -156832221 - AluSq/x SINE Alu -180 133 1 238 269 39 0 chrX 5767709 5767787 -156832143 - L1M3 LINE L1 -293 5875 5795 830 113 0 0 chrX 5767823 5767938 -156831992 + MLT2B1 LTR ERVL 1 115 -405 1411 181 21 31 chrX 5767942 5768230 -156831700 - L1PB4 LINE L1 -2 6154 5870 806 127 13 64 chrX 5768299 5768381 -156831549 - L1PB4 LINE L1 -284 5872 5787 360 0 0 0 chrX 5768381 5768421 -156831509 + (TG)n Simple_repeat Simple_repeat 2 41 0 806 127 13 64 chrX 5768421 5768438 -156831492 - L1PB4 LINE L1 -369 5787 5771 423 0 0 0 chrX 5768438 5768485 -156831445 + (TAGA)n Simple_repeat Simple_repeat 1 47 0 806 127 13 64 chrX 5768485 5768541 -156831389 - L1PB4 LINE L1 -385 5771 5724 269 319 104 8 chrX 5768573 5768708 -156831222 - MIR3 SINE MIR -2 206 58 1668 189 0 10 chrX 5768806 5769097 -156830833 + AluJo SINE Alu 1 288 -24 25 0 0 0 chrX 5769102 5769127 -156830803 + AT_rich Low_complexity Low_complexity 1 25 0 24 53 0 0 chrX 5769238 5769276 -156830654 + AT_rich Low_complexity Low_complexity 1 38 0 1946 107 41 17 chrX 5770141 5770431 -156829499 - AluSg SINE Alu -13 297 1 180 0 0 0 chrX 5770725 5770745 -156829185 + (CA)n Simple_repeat Simple_repeat 1 20 0 384 22 0 0 chrX 5770749 5770794 -156829136 + (TG)n Simple_repeat Simple_repeat 2 46 0 180 0 0 0 chrX 5770793 5770813 -156829117 + (TA)n Simple_repeat Simple_repeat 1 20 0 * 300 313 78 11 chrX 5770887 5771066 -156828864 + L2 LINE L2 2397 2587 -727 1864 237 86 34 chrX 5771925 5772483 -156827447 - MLT1E LTR MaLR -6 587 1 39 68 0 0 chrX 5772529 5772603 -156827327 + AT_rich Low_complexity Low_complexity 1 74 0 1270 137 0 41 chrX 5772672 5772891 -156827039 + AluJb SINE Alu 101 310 -2 272 282 136 9 chrX 5772907 5773017 -156826913 - MIR SINE MIR -74 188 65 1858 166 0 0 chrX 5773344 5773622 -156826308 - AluJo SINE Alu -34 278 1 1970 136 0 17 chrX 5774041 5774343 -156825587 + AluSx SINE Alu 1 297 -15 1082 153 13 98 chrX 5774835 5775071 -156824859 + MER20 DNA MER1_type 3 218 -1 228 211 42 42 chrX 5775151 5775222 -156824708 + MIR SINE MIR 186 256 -6 513 118 11 65 chrX 5776522 5776578 -156823352 - Alu SINE Alu -13 297 246 2420 38 0 17 chrX 5776578 5776865 -156823065 - AluY SINE Alu -29 282 1 513 118 11 65 chrX 5776865 5776901 -156823029 - Alu SINE Alu -64 246 210 240 35 0 0 chrX 5777297 5777326 -156822604 + (TG)n Simple_repeat Simple_repeat 2 30 0 989 169 6 17 chrX 5777955 5778132 -156821798 + MER20 DNA MER1_type 45 219 0 1046 126 69 6 chrX 5778957 5779131 -156820799 - L1MB3 LINE L1 -2 6181 5997 21 0 0 0 chrX 5779144 5779165 -156820765 + AT_rich Low_complexity Low_complexity 1 21 0 397 238 54 61 chrX 5779934 5780081 -156819849 + MIR3 SINE MIR 37 182 -26 1562 192 4 4 chrX 5780206 5780487 -156819443 - AluJo SINE Alu -31 281 1 271 318 34 0 chrX 5780488 5780576 -156819354 + MIR3 SINE MIR 108 198 -10 237 65 0 0 chrX 5780664 5780695 -156819235 + (GAAA)n Simple_repeat Simple_repeat 2 32 0 245 291 186 33 chrX 5780953 5781163 -156818767 - L2 LINE L2 -963 2351 2110 222 260 153 33 chrX 5781488 5781638 -156818292 - L2 LINE L2 -1202 2112 1945 424 146 73 0 chrX 5781838 5781920 -156818010 + L1PB4 LINE L1 6062 6149 -7 1466 189 0 23 chrX 5781960 5782224 -156817706 + AluJo SINE Alu 28 285 -27 24 0 0 0 chrX 5782224 5782248 -156817682 + AT_rich Low_complexity Low_complexity 1 24 0 220 310 0 17 chrX 5782268 5782326 -156817604 - MIR3 SINE MIR -53 155 99 1715 184 7 0 chrX 5783130 5783412 -156816518 + AluJo SINE Alu 1 284 -28 2357 147 11 3 chrX 5784069 5784430 -156815500 - MLT1A1 LTR MaLR 0 365 2 2170 113 3 10 chrX 5784831 5785141 -156814789 - AluSg SINE Alu -2 308 1 462 99 0 8 chrX 5787229 5787443 -156812487 + AluSx SINE Alu 1 286 -26 335 60 20 0 chrX 5788061 5788111 -156811819 + (TG)n Simple_repeat Simple_repeat 2 52 0 727 170 8 40 chrX 5788179 5788688 -156811242 + (TAGA)n Simple_repeat Simple_repeat 1 492 0 2560 45 0 0 chrX 5790146 5790434 -156809496 - AluY SINE Alu -23 288 1 1967 119 0 18 chrX 5790663 5790969 -156808961 - AluSx SINE Alu 0 301 1 468 216 31 68 chrX 5792425 5792587 -156807343 - MLT1J2 LTR MaLR -43 406 248 1882 149 10 129 chrX 5793225 5793332 -156806598 + MER7A DNA MER2_type 1 119 -2919 2347 98 0 0 chrX 5793332 5793628 -156806302 - AluSx SINE Alu -16 296 1 1882 149 10 129 chrX 5793628 5793915 -156806015 + MER7A DNA MER2_type 119 346 0 341 215 11 0 chrX 5794008 5794101 -156805829 + (TG)n Simple_repeat Simple_repeat 1 94 0 202 298 197 10 chrX 5995619 5995817 -156604113 - L2 LINE L2 -589 2725 2491 205 208 28 0 chrX 5997471 5997543 -156602387 + (TCTA)n Simple_repeat Simple_repeat 1 74 0 357 282 66 54 chrX 5997722 5997981 -156601949 + L1MA9 LINE L1 6013 6274 -38 225 134 0 90 chrX 5998032 5998062 -156601868 + (TAAAAA)n Simple_repeat Simple_repeat 4 26 -38 1220 60 0 0 chrX 5998062 5998213 -156601717 + L1PA3 LINE L1 6002 6152 -3 225 134 0 90 chrX 5998213 5998249 -156601681 + (TAAAAA)n Simple_repeat Simple_repeat 26 64 0 279 0 0 0 chrX 5998667 5998698 -156601232 + (A)n Simple_repeat Simple_repeat 1 31 0 763 229 39 0 chrX 5998703 5998856 -156601074 + FRAM SINE Alu 1 159 -7 2333 109 0 0 chrX 6000256 6000567 -156599363 - AluSx SINE Alu -1 311 1 1711 154 11 0 chrX 6000698 6000970 -156598960 - AluJo SINE Alu -3 309 35 26 0 0 0 chrX 6001029 6001055 -156598875 + AT_rich Low_complexity Low_complexity 1 26 0 286 256 13 0 chrX 6001253 6001331 -156598599 - MLT1F LTR MaLR -463 79 1 200 219 12 37 chrX 6001892 6001974 -156597956 + A-rich Low_complexity Low_complexity 5 84 0 581 259 151 22 chrX 6002428 6002660 -156597270 - MIR SINE MIR 0 262 1 5481 90 15 0 chrX 6002971 6003762 -156596168 - L1PA10 LINE L1 -4 6164 5362 754 132 0 0 chrX 6003758 6003887 -156596043 + L1PA10 LINE L1 5222 5350 -796 * 207 100 0 0 chrX 6003962 6003992 -156595938 + (CAAA)n Simple_repeat Simple_repeat 2 31 0 28 0 0 0 chrX 6005147 6005175 -156594755 + AT_rich Low_complexity Low_complexity 1 28 0 288 343 0 0 chrX 6006132 6006231 -156593699 - MIR SINE MIR -10 252 154 1391 192 14 52 chrX 6006431 6006718 -156593212 - AluJb SINE Alu -36 276 1 251 299 0 73 chrX 6006729 6006866 -156593064 - MIR SINE MIR -64 144 18 857 136 0 0 chrX 6007157 6007289 -156592641 - FLAM_C SINE Alu 0 133 2 680 219 11 48 chrX 6007678 6007865 -156592065 - MER20 DNA MER1_type 0 219 40 2177 136 72 13 chrX 6007873 6008264 -156591666 - MSTB LTR MaLR -12 414 1 244 211 19 0 chrX 6008264 6008310 -156591620 - MER20 DNA MER1_type -172 47 1 308 323 111 72 chrX 6008347 6009084 -156590846 + L2 LINE L2 2211 2976 -338 22 0 0 0 chrX 6009357 6009379 -156590551 + AT_rich Low_complexity Low_complexity 1 22 0 217 310 147 0 chrX 6009642 6009758 -156590172 - MIR SINE MIR -21 241 109 671 284 31 7 chrX 6009774 6010182 -156589748 - MLT1E3 LTR MaLR -147 477 30 247 221 116 0 chrX 6010959 6011045 -156588885 - MER20 DNA MER1_type -100 119 24 2136 87 13 52 chrX 6011977 6012287 -156587643 + AluSx SINE Alu 1 298 -14 343 289 114 30 chrX 6013142 6013343 -156586587 + L1MC4a LINE L1 5703 5920 -1888 2171 213 30 70 chrX 6013575 6014270 -156585660 + LTR8 LTR ERV1 25 691 0 398 250 25 0 chrX 6015911 6015991 -156583939 + MER5A DNA MER1_type 2 83 -106 371 351 0 7 chrX 6016434 6016582 -156583348 - MIR SINE MIR -48 214 68 2132 138 0 0 chrX 6016974 6017285 -156582645 - AluSx SINE Alu -1 311 1 700 314 90 0 chrX 6017720 6018054 -156581876 + L2 LINE L2 2575 2938 -376 290 238 0 0 chrX 6018168 6018231 -156581699 + L2 LINE L2 3210 3272 0 216 413 0 0 chrX 6018909 6019001 -156580929 + MIR3 SINE MIR 69 160 -48 1478 159 4 4 chrX 6019576 6019833 -156580097 - Tigger3(Golem) DNA MER2_type -2 3027 2771 590 197 21 9 chrX 6019830 6019958 -156579972 - Tigger3(Golem) DNA MER2_type -2887 142 1 * 779 193 40 0 chrX 6020048 6020198 -156579732 - FRAM SINE Alu -16 160 5 225 0 0 0 chrX 6020413 6020438 -156579492 + (CA)n Simple_repeat Simple_repeat 2 26 0 581 272 6 12 chrX 6020527 6020696 -156579234 + MER20 DNA MER1_type 50 217 -2 3122 167 19 15 chrX 6020837 6021429 -156578501 - LTR26 LTR ERV1 0 603 10 2160 135 0 0 chrX 6022004 6022308 -156577622 - AluSx SINE Alu -8 304 1 3727 94 10 52 chrX 6022397 6023015 -156576915 - LTR14B LTR ERVK 0 608 17 2449 106 30 8 chrX 6023771 6024138 -156575792 + THE1C LTR MaLR 1 375 0 822 195 41 59 chrX 6024262 6024483 -156575447 + MER58A DNA MER1_type 7 223 -1 507 60 0 0 chrX 6025154 6025221 -156574709 + (TG)n Simple_repeat Simple_repeat 1 67 0 673 211 34 11 chrX 6025370 6025545 -156574385 - MER3 DNA MER1_type -12 197 19 309 85 0 0 chrX 6026578 6026625 -156573305 + L1MA5A LINE L1 6241 6287 -10 31 0 0 0 chrX 6027034 6027065 -156572865 + AT_rich Low_complexity Low_complexity 1 31 0 1246 132 0 0 chrX 6027065 6027239 -156572691 - AluSq SINE Alu -24 289 116 183 42 0 0 chrX 6027428 6027452 -156572478 + (TTTA)n Simple_repeat Simple_repeat 4 27 0 840 137 0 0 chrX 6027452 6027569 -156572361 - AluJb SINE Alu -195 117 1 346 363 61 9 chrX 6028314 6028526 -156571404 - L1ME LINE L1 -340 5781 5559 1662 165 36 6 chrX 6030153 6030487 -156569443 + L1MB7 LINE L1 5458 5801 -383 2220 52 38 3 chrX 6030609 6030896 -156569034 + AluY SINE Alu 2 298 -13 244 275 14 0 chrX 6031270 6031339 -156568591 - LTR41 LTR ERVL -613 160 91 1510 217 14 6 chrX 6031457 6031812 -156568118 + L1MB7 LINE L1 5814 6171 -13 4515 127 28 1 chrX 6031857 6032604 -156567326 - L1PB4 LINE L1 -2 6154 5388 243 103 0 0 chrX 6032817 6032856 -156567074 + (T)n Simple_repeat Simple_repeat 1 39 0 656 41 70 23 chrX 6036059 6036230 -156563700 + (TA)n Simple_repeat Simple_repeat 2 180 0 1570 169 47 32 chrX 6036230 6036509 -156563421 - AluJo SINE Alu -26 286 4 249 313 0 38 chrX 6039034 6039114 -156560816 - L2 LINE L2 -10 3303 3227 1510 271 81 17 chrX 6039906 6040960 -156558970 + L1ME LINE L1 4437 5553 -611 456 162 60 43 chrX 6040962 6041079 -156558851 - MER66B LTR ERV1 0 486 368 181 302 32 16 chrX 6042061 6042124 -156557806 - MIR SINE MIR -188 74 11 263 270 10 50 chrX 6042142 6042242 -156557688 + MIR3 SINE MIR 3 98 -110 1440 226 28 22 chrX 6042366 6042728 -156557202 - MLT1A1 LTR MaLR -1 427 1 1649 205 7 7 chrX 6042958 6043251 -156556679 - AluJo SINE Alu -19 293 1 251 300 40 47 chrX 6043577 6043727 -156556203 - L2 LINE L2 -169 3144 2996 501 17 0 0 chrX 6044601 6044659 -156555271 + (CA)n Simple_repeat Simple_repeat 1 58 0 1744 168 3 3 chrX 6045684 6045969 -156553961 - AluJo SINE Alu -27 285 1 967 239 92 35 chrX 6046465 6046813 -156553117 + MLT1A2 LTR MaLR 1 368 -6 2302 126 36 14 chrX 6046896 6047252 -156552678 - THE1B LTR MaLR 0 364 1 1973 221 56 4 chrX 6047291 6047756 -156552174 + MLT1D LTR MaLR 16 504 -1 1109 128 0 0 chrX 6048661 6048840 -156551090 - L1PA16 LINE L1 -190 5976 5798 198 118 0 0 chrX 6049160 6049194 -156550736 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 2173 109 0 13 chrX 6049266 6049568 -156550362 - AluSx SINE Alu -3 309 12 1551 160 97 4 chrX 6050397 6050666 -156549264 - AluJb SINE Alu -17 295 2 2318 57 7 10 chrX 6050677 6050975 -156548955 - AluY SINE Alu -14 297 1 218 310 39 62 chrX 6051170 6051299 -156548631 + MER5A DNA MER1_type 8 133 -56 390 271 102 45 chrX 6051603 6051885 -156548045 + MLT2C2 LTR ERVL 1 284 -113 234 0 0 0 chrX 6051903 6051929 -156548001 + (TC)n Simple_repeat Simple_repeat 1 26 0 570 175 17 34 chrX 6051959 6052316 -156547614 + (TAGA)n Simple_repeat Simple_repeat 1 350 0 450 0 0 0 chrX 6052327 6052759 -156547171 + (TA)n Simple_repeat Simple_repeat 1 432 0 2014 125 67 25 chrX 6052398 6052709 -156547221 + THE1C LTR MaLR 1 330 -45 450 0 0 0 chrX 6052709 6052759 -156547171 + (TA)n Simple_repeat Simple_repeat 2 51 0 2014 125 67 25 chrX 6052759 6052807 -156547123 + THE1C LTR MaLR 330 375 0 396 88 0 0 chrX 6052808 6052865 -156547065 + (TGGA)n Simple_repeat Simple_repeat 4 60 0 206 253 0 24 chrX 6052941 6053024 -156546906 + (TA)n Simple_repeat Simple_repeat 1 81 0 2112 123 7 0 chrX 6053142 6053443 -156546487 + AluSx SINE Alu 1 303 -9 1833 156 54 15 chrX 6054447 6054781 -156545149 - MER7A DNA MER2_type 0 346 2 192 191 0 0 chrX 6054781 6054817 -156545113 + (CATATA)n Simple_repeat Simple_repeat 4 39 0 464 156 11 0 chrX 6054823 6054913 -156545017 - L1ME LINE L1 -444 5718 5628 285 261 6 70 chrX 6054914 6055071 -156544859 + L1ME2 LINE L1 5737 5883 -281 2771 7 3 3 chrX 6055573 6055883 -156544047 + AluYa5 SINE Alu 1 310 -1 965 178 4 62 chrX 6056086 6056327 -156543603 - L1MD2 LINE L1 -22 6337 6111 22 0 0 0 chrX 6056695 6056717 -156543213 + AT_rich Low_complexity Low_complexity 1 22 0 373 186 0 20 chrX 6056964 6057066 -156542864 + (CA)n Simple_repeat Simple_repeat 1 100 0 198 281 24 12 chrX 6058223 6058305 -156541625 + MIR SINE MIR 110 192 -70 634 204 98 91 chrX 6058505 6058666 -156541264 + MER39 LTR ERV1 417 582 -125 5095 36 0 2 chrX 6058666 6059276 -156540654 + L1PA4 LINE L1 5544 6152 -3 634 204 98 91 chrX 6059276 6059378 -156540552 + MER39 LTR ERV1 582 682 -25 25 65 0 0 chrX 6059467 6059513 -156540417 + AT_rich Low_complexity Low_complexity 1 46 0 264 274 12 0 chrX 6059635 6059719 -156540211 - L1ME1 LINE L1 -81 6085 6001 1877 239 29 11 chrX 6059761 6060322 -156539608 + L1ME2 LINE L1 5391 5961 -203 890 210 36 0 chrX 6060639 6060834 -156539096 + MER58A DNA MER1_type 12 213 -11 204 164 60 15 chrX 6062450 6062517 -156537413 + (TA)n Simple_repeat Simple_repeat 2 71 0 489 82 88 0 chrX 6062528 6062789 -156537141 + (TA)n Simple_repeat Simple_repeat 1 284 0 198 293 85 94 chrX 6062983 6063089 -156536841 + L2 LINE L2 3168 3272 0 2078 117 45 3 chrX 6063592 6063883 -156536047 + AluSx SINE Alu 1 303 -9 2761 124 7 29 chrX 6064000 6064444 -156535486 - Tigger2a DNA MER2_type 0 434 1 600 136 57 16 chrX 6066072 6066139 -156533791 + (TAGA)n Simple_repeat Simple_repeat 1 64 -290 230 95 24 0 chrX 6066139 6066181 -156533749 + (CATA)n Simple_repeat Simple_repeat 2 44 0 600 136 57 16 chrX 6066181 6066413 -156533517 + (TAGA)n Simple_repeat Simple_repeat 64 354 0 344 282 146 9 chrX 6068272 6068382 -156531548 - MER82 DNA MER2_type -6 647 523 1886 199 22 10 chrX 6068399 6068802 -156531128 - MER82 DNA MER2_type -245 408 1 247 169 46 0 chrX 6068802 6068867 -156531063 + (TATG)n Simple_repeat Simple_repeat 3 70 0 331 359 42 50 chrX 6070194 6070551 -156529379 + L1ME LINE L1 5329 5682 -439 1851 141 3 55 chrX 6070577 6070904 -156529026 + AluJb SINE Alu 1 310 -2 3953 137 27 10 chrX 6071844 6072543 -156527387 - MER50 LTR ERV1 -23 711 1 1863 143 159 24 chrX 6073680 6074057 -156525873 - MSTA LTR MaLR 0 428 1 33 0 0 0 chrX 6074454 6074487 -156525443 + AT_rich Low_complexity Low_complexity 1 33 0 384 331 186 33 chrX 6074501 6075072 -156524858 + L1MC4a LINE L1 5267 5924 -1884 225 295 13 0 chrX 6076657 6076735 -156523195 - L1ME LINE L1 -467 5654 5576 276 330 33 60 chrX 6077533 6077644 -156522286 - MIR3 SINE MIR -1 207 101 509 42 111 0 chrX 6077644 6077716 -156522214 - MADE1 DNA Mariner 0 80 1 276 330 33 60 chrX 6077716 6077786 -156522144 - MIR3 SINE MIR -107 101 31 184 339 48 48 chrX 6078627 6078751 -156521179 - MIR SINE MIR -64 144 21 904 89 37 0 chrX 6081280 6081415 -156518515 - L1PA10 LINE L1 -1 6167 6028 225 0 0 0 chrX 6081750 6081775 -156518155 + (TA)n Simple_repeat Simple_repeat 2 26 0 * 501 32 0 0 chrX 6081774 6081837 -156518093 + (GA)n Simple_repeat Simple_repeat 2 64 0 2463 76 0 0 chrX 6083411 6083712 -156516218 + AluSx SINE Alu 1 301 -11 727 176 5 49 chrX 6084476 6084681 -156515249 + L1MA8 LINE L1 6091 6286 -5 282 172 31 16 chrX 6084738 6084802 -156515128 + MLT1F1 LTR MaLR 67 131 -436 1231 234 82 62 chrX 6084811 6085064 -156514866 + L1MC3 LINE L1 7206 7452 -333 237 33 0 0 chrX 6085064 6085094 -156514836 + (CAA)n Simple_repeat Simple_repeat 1 30 0 1231 234 82 62 chrX 6085094 6085571 -156514359 + L1MC3 LINE L1 7452 7766 -19 991 151 12 8 chrX 6085382 6085641 -156514289 + (TA)n Simple_repeat Simple_repeat 1 260 0 * 759 155 0 0 chrX 6086309 6086425 -156513505 + AluSx SINE Alu 1 116 -197 3757 144 159 95 chrX 6086425 6087713 -156512217 - pTR5 LTR ERV1 -3 2435 744 945 144 163 6 chrX 6087713 6087873 -156512057 + AluSx SINE Alu 106 290 -22 837 235 23 18 chrX 6087953 6088170 -156511760 - MER20 DNA MER1_type -1 218 1 1820 241 4 12 chrX 6088899 6089396 -156510534 + L1MD3 LINE L1 7501 7993 -2 232 297 127 17 chrX 6089626 6089744 -156510186 - MIR SINE MIR -78 184 54 205 338 78 35 chrX 6089985 6090127 -156509803 + MIR3 SINE MIR 2 149 -59 2270 98 0 0 chrX 6091033 6091328 -156508602 - AluSg SINE Alu -15 295 1 265 206 50 14 chrX 6091429 6091570 -156508360 + (TA)n Simple_repeat Simple_repeat 1 146 0 334 293 45 30 chrX 6091617 6091819 -156508111 - L1MB1 LINE L1 -257 5905 5701 233 326 152 0 chrX 6091832 6091924 -156508006 - MER5B DNA MER1_type -61 117 12 249 248 67 48 chrX 6091931 6092036 -156507894 + MER5B DNA MER1_type 65 171 -7 2665 83 11 0 chrX 6092607 6092958 -156506972 - THE1A LTR MaLR 0 355 1 11253 105 15 0 chrX 6092958 6094514 -156505416 - THE1A-int LTR MaLR 0 1580 1 2693 73 8 6 chrX 6094514 6094868 -156505062 - THE1A LTR MaLR 0 355 1 647 191 7 40 chrX 6094872 6095024 -156504906 - L1M1 LINE L1 -7397 168 22 333 93 37 0 chrX 6095042 6095096 -156504834 - L1 LINE L1 -1379 4767 4712 1501 157 18 28 chrX 6095105 6095391 -156504539 - Tigger1 DNA MER2_type -2135 283 1 4195 179 26 11 chrX 6095483 6096009 -156503921 + L1MA4 LINE L1 4490 5006 -1296 2126 146 0 19 chrX 6096009 6096324 -156503606 + AluSx SINE Alu 1 309 -3 4195 179 26 11 chrX 6096324 6097315 -156502615 + L1MA4 LINE L1 5006 6067 -235 359 186 35 0 chrX 6097308 6097394 -156502536 + L1MB4 LINE L1 6091 6179 -1 * 1803 177 20 41 chrX 6098597 6099150 -156500780 - L1M2 LINE L1 -623 5689 5158 284 167 11 89 chrX 6099150 6099240 -156500690 + MLT2C1 LTR ERVL 260 342 -55 22 35 0 0 chrX 6099245 6099274 -156500656 + AT_rich Low_complexity Low_complexity 1 29 0 418 172 6 32 chrX 6101196 6101353 -156498577 + GA-rich Low_complexity Low_complexity 1 153 0 288 215 0 25 chrX 6101900 6102021 -156497909 + GA-rich Low_complexity Low_complexity 1 118 0 220 208 19 0 chrX 6102599 6102705 -156497225 + (TA)n Simple_repeat Simple_repeat 2 109 0 22 0 0 0 chrX 6102922 6102944 -156496986 + AT_rich Low_complexity Low_complexity 1 22 0 296 237 33 3 chrX 6102990 6103319 -156496611 + (TA)n Simple_repeat Simple_repeat 1 339 0 391 154 49 0 chrX 6103332 6103725 -156496205 + (TA)n Simple_repeat Simple_repeat 1 412 0 343 136 0 0 chrX 6106101 6106167 -156493763 - L1P4 LINE L1 -507 5659 5594 435 180 0 30 chrX 6106477 6106577 -156493353 + L1PA16 LINE L1 5733 5829 -337 1945 158 21 21 chrX 6106577 6106958 -156492972 + L1PA16 LINE L1 5784 6164 -2 288 0 0 0 chrX 6107400 6107432 -156492498 + (A)n Simple_repeat Simple_repeat 1 32 0 223 333 62 31 chrX 6107650 6107779 -156492151 - MIR SINE MIR 0 262 130 1744 94 148 0 chrX 6110195 6110451 -156489479 + AluSx SINE Alu 1 294 -18 2066 92 82 0 chrX 6110790 6111071 -156488859 - AluSg SINE Alu -6 304 1 606 165 8 8 chrX 6111464 6111585 -156488345 - MLT2B2 LTR ERVL -394 121 1 552 100 0 0 chrX 6111592 6111672 -156488258 - MADE1 DNA Mariner 0 80 1 2357 86 3 0 chrX 6111824 6112116 -156487814 + AluSp SINE Alu 1 293 -20 832 292 80 31 chrX 6112120 6112630 -156487300 - L1MEc LINE L1 -4336 2060 1526 2255 57 0 30 chrX 6113157 6113455 -156486475 - AluY SINE Alu -22 289 1 21 36 0 0 chrX 6113822 6113850 -156486080 + AT_rich Low_complexity Low_complexity 1 28 0 402 227 241 0 chrX 6115737 6115878 -156484052 - MER5A DNA MER1_type -6 183 9 1671 179 3 25 chrX 6116823 6117141 -156482789 - AluJo SINE Alu -1 311 1 1916 132 10 24 chrX 6117882 6118178 -156481752 - AluJb SINE Alu -20 292 1 1140 86 0 0 chrX 6118198 6118628 -156481302 + (TA)n Simple_repeat Simple_repeat 1 430 0 2253 107 0 7 chrX 6120925 6121349 -156478581 + AluY SINE Alu 1 422 0 310 233 25 42 chrX 6122249 6122369 -156477561 - L1MC4 LINE L1 0 8042 7925 216 0 0 0 chrX 6122384 6122408 -156477522 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 1933 107 44 4 chrX 6122410 6122680 -156477250 - AluSq SINE Alu -32 281 1 846 104 19 13 chrX 6122687 6122841 -156477089 + (TCTA)n Simple_repeat Simple_repeat 2 156 0 863 160 6 0 chrX 6122884 6123059 -156476871 + (TCTA)n Simple_repeat Simple_repeat 2 177 0 761 191 8 0 chrX 6123076 6123342 -156476588 + (TCTG)n Simple_repeat Simple_repeat 1 268 0 1444 239 81 84 chrX 6123416 6124294 -156475636 - L1MC4 LINE L1 -120 7922 7048 403 306 95 31 chrX 6124958 6125180 -156474750 - L3 LINE CR1 -230 1347 1112 229 299 65 19 chrX 6125190 6125297 -156474633 + MER117 DNA MER1_type 33 144 -53 1802 181 13 19 chrX 6125310 6125624 -156474306 + AluJb SINE Alu 1 312 0 214 301 0 55 chrX 6125789 6125862 -156474068 - L3 LINE CR1 -621 956 888 270 0 0 0 chrX 6126875 6126905 -156473025 + (TG)n Simple_repeat Simple_repeat 1 30 0 249 33 0 0 chrX 6126905 6126935 -156472995 + (GA)n Simple_repeat Simple_repeat 1 30 0 267 286 17 76 chrX 6127631 6127667 -156472263 - MIR SINE MIR -71 191 154 2364 63 0 3 chrX 6127667 6127966 -156471964 - AluY SINE Alu -13 298 1 267 286 17 76 chrX 6127966 6128048 -156471882 - MIR SINE MIR -108 154 80 3471 139 13 95 chrX 6128357 6128855 -156471075 + MER44D DNA MER2_type 1 415 -2172 2447 83 32 29 chrX 6128855 6129229 -156470701 - THE1C LTR MaLR 0 375 1 3471 139 13 95 chrX 6129229 6129498 -156470432 + MER44D DNA MER2_type 415 705 0 633 260 119 102 chrX 6129498 6130017 -156469913 - MLT1F1 LTR MaLR -5 562 10 2239 83 20 10 chrX 6132029 6132353 -156467577 - AluSp SINE Alu 0 313 1 1194 146 30 43 chrX 6133099 6133332 -156466598 - MER30 DNA MER1_type 0 230 1 249 250 17 0 chrX 6133404 6133464 -156466466 + G-rich Low_complexity Low_complexity 3 63 0 181 136 23 23 chrX 6133466 6133510 -156466420 + GA-rich Low_complexity Low_complexity 2 45 0 727 154 19 23 chrX 6133531 6133921 -156466009 + GA-rich Low_complexity Low_complexity 1 388 0 666 335 44 25 chrX 6135390 6135796 -156464134 - LTR16C LTR ERVL -4 487 74 1908 154 7 7 chrX 6135937 6136236 -156463694 - AluSx SINE Alu -13 299 1 697 276 115 57 chrX 6136303 6136868 -156463062 + L1M4 LINE L1 2740 3337 -2809 4946 75 42 31 chrX 6136880 6137587 -156462343 + SVA Other Other 672 1386 0 228 333 31 0 chrX 6137779 6137908 -156462022 + L1M4 LINE L1 3521 3653 -2493 362 281 130 80 chrX 6138110 6138662 -156461268 + L1M4 LINE L1 3875 4454 -1692 1723 181 10 7 chrX 6140638 6140942 -156458988 - AluSx SINE Alu -3 309 5 2706 118 8 98 chrX 6141304 6141496 -156458434 - MER4B LTR ERV1 0 779 571 183 42 0 0 chrX 6141496 6141520 -156458410 + (CATAA)n Simple_repeat Simple_repeat 1 24 0 2706 118 8 98 chrX 6141520 6141995 -156457935 - MER4B LTR ERV1 -208 571 1 1787 185 3 6 chrX 6142004 6142317 -156457613 + AluJo SINE Alu 1 312 0 411 106 24 24 chrX 6142322 6142407 -156457523 + GA-rich Low_complexity Low_complexity 1 85 0 203 88 29 0 chrX 6144043 6144077 -156455853 + (GAAAA)n Simple_repeat Simple_repeat 3 37 0 808 311 65 38 chrX 6144665 6145327 -156454603 + Charlie7 DNA MER1_type 59 738 -1874 370 243 29 70 chrX 6145326 6145598 -156454332 + Charlie7 DNA MER1_type 2349 2609 -3 * 2229 90 6 51 chrX 6146247 6146559 -156453371 + AluSg SINE Alu 1 298 -12 278 291 58 0 chrX 6147214 6147317 -156452613 - Charlie2 DNA MER1_type -2305 477 369 297 321 0 15 chrX 6147420 6147551 -156452379 - Charlie2 DNA MER1_type -2483 299 171 456 309 42 30 chrX 6147712 6147880 -156452050 + MIR SINE MIR 62 231 -31 7768 71 5 9 chrX 6147897 6148973 -156450957 + MER11C LTR ERVK 1 1071 0 934 233 116 33 chrX 6149265 6149647 -156450283 + MLT1D LTR MaLR 88 498 -7 4933 104 3 19 chrX 6149896 6150127 -156449803 + L1MA2 LINE L1 5559 5792 -512 1496 89 181 16 chrX 6150127 6150375 -156449555 + AluSc SINE Alu 1 289 -10 4933 104 3 19 chrX 6150375 6150901 -156449029 + L1MA2 LINE L1 5792 6304 0 2600 149 4 28 chrX 6150907 6151411 -156448519 + L1MA3 LINE L1 5814 6305 0 23 0 0 0 chrX 6151411 6151434 -156448496 + AT_rich Low_complexity Low_complexity 1 23 0 2444 119 119 0 chrX 6151996 6152384 -156447546 - MER57B LTR ERV1 0 434 1 2193 171 72 100 chrX 6152387 6153077 -156446853 - MER50 LTR ERV1 -54 680 10 2125 171 40 33 chrX 6153369 6153819 -156446111 + MER4E LTR ERV1 1 453 -326 559 122 0 0 chrX 6153830 6153912 -156446018 - AluJ/FRAM SINE Alu -15 297 216 1941 116 0 65 chrX 6153912 6154267 -156445663 + MER4E LTR ERV1 448 779 0 21 0 0 0 chrX 6155411 6155432 -156444498 + AT_rich Low_complexity Low_complexity 1 21 0 203 318 15 15 chrX 6156125 6156191 -156443739 + MER5B DNA MER1_type 2 67 -111 304 209 68 25 chrX 6156324 6156487 -156443443 + (CATATA)n Simple_repeat Simple_repeat 3 172 0 569 298 77 25 chrX 6156667 6156752 -156443178 + MIR SINE MIR 12 91 -171 2248 87 30 0 chrX 6156752 6157050 -156442880 - AluSx SINE Alu -5 307 1 569 298 77 25 chrX 6157050 6157199 -156442731 + MIR SINE MIR 91 258 -4 394 309 77 24 chrX 6157900 6158068 -156441862 - MER5B DNA MER1_type -1 177 1 1036 160 12 72 chrX 6158608 6158858 -156441072 + L1MD2 LINE L1 6111 6345 -14 222 37 0 0 chrX 6158871 6158898 -156441032 + (GA)n Simple_repeat Simple_repeat 2 28 0 5789 114 23 23 chrX 6159540 6160610 -156439320 - L1PA13 LINE L1 0 6163 5098 306 0 0 0 chrX 6160627 6160661 -156439269 + (CA)n Simple_repeat Simple_repeat 2 35 0 194 291 175 10 chrX 6160665 6160768 -156439162 - MIR SINE MIR -42 220 101 1551 168 58 21 chrX 6160806 6161097 -156438833 - AluJo SINE Alu -10 302 1 2297 36 79 0 chrX 6161123 6161400 -156438530 + AluY SINE Alu 1 299 -12 2183 93 101 58 chrX 6161919 6162336 -156437594 + LTR49 LTR ERV1 1 435 -160 1322 139 46 8 chrX 6162339 6162577 -156437353 - L1PB4 LINE L1 -391 5765 5519 * 1440 173 13 23 chrX 6162576 6162876 -156437054 + L1PB4 LINE L1 5784 6080 -76 814 154 0 29 chrX 6163370 6163506 -156436424 - FLAM_A SINE Alu -1 132 1 1055 174 38 19 chrX 6164412 6164624 -156435306 + MER20 DNA MER1_type 1 216 -3 21 57 0 0 chrX 6165094 6165129 -156434801 + AT_rich Low_complexity Low_complexity 1 35 0 35 0 0 0 chrX 6165223 6165258 -156434672 + AT_rich Low_complexity Low_complexity 1 35 0 40 21 0 0 chrX 6165369 6165416 -156434514 + AT_rich Low_complexity Low_complexity 1 47 0 273 197 0 0 chrX 6166339 6166400 -156433530 + (TATATG)n Simple_repeat Simple_repeat 3 63 0 291 267 20 0 chrX 6168620 6168766 -156431164 + GA-rich Low_complexity Low_complexity 3 151 0 21 0 0 0 chrX 6169412 6169433 -156430497 + AT_rich Low_complexity Low_complexity 1 21 0 810 188 0 0 chrX 6170874 6171007 -156428923 - FLAM_C SINE Alu 0 133 1 695 180 9 0 chrX 6172302 6172413 -156427517 + FLAM_A SINE Alu 1 112 -30 324 0 0 0 chrX 6172422 6172458 -156427472 + (TG)n Simple_repeat Simple_repeat 2 37 0 219 253 38 164 chrX 6175645 6175795 -156424135 - L2 LINE L2 -69 3244 3077 2306 73 6 49 chrX 6175795 6176122 -156423808 + AluSq SINE Alu 1 313 0 219 253 38 164 chrX 6176122 6176277 -156423653 - L2 LINE L2 -236 3077 3010 593 253 79 0 chrX 6176277 6176467 -156423463 + MER3 DNA MER1_type 1 205 -4 219 253 38 164 chrX 6176467 6176606 -156423324 - L2 LINE L2 -303 3010 2855 202 243 54 63 chrX 6177049 6177160 -156422770 + MIR SINE MIR 85 194 -68 1216 214 81 27 chrX 6177162 6177532 -156422398 - MLT1D LTR MaLR 0 505 116 300 393 15 15 chrX 6177693 6177828 -156422102 + L2 LINE L2 3138 3272 0 2279 126 0 0 chrX 6178254 6178564 -156421366 + AluSq SINE Alu 1 310 -3 380 287 52 9 chrX 6178988 6179103 -156420827 + L2 LINE L2 3189 3308 -5 1830 140 0 92 chrX 6179314 6179457 -156420473 + AluJo SINE Alu 9 105 -207 2302 94 19 0 chrX 6179457 6179764 -156420166 + AluSp SINE Alu 1 313 0 1830 140 0 92 chrX 6179764 6179955 -156419975 + AluJo SINE Alu 105 312 0 445 156 21 10 chrX 6179966 6180062 -156419868 + GA-rich Low_complexity Low_complexity 2 98 0 231 114 0 0 chrX 6180062 6180106 -156419824 + (CAGG)n Simple_repeat Simple_repeat 2 45 0 269 344 46 23 chrX 6181264 6181395 -156418535 + L2 LINE L2 2227 2360 -954 453 294 0 0 chrX 6181549 6181675 -156418255 - MER94 DNA DNA -4 130 5 276 322 46 11 chrX 6182236 6182323 -156417607 + L2 LINE L2 3193 3282 -31 2247 77 11 0 chrX 6182401 6182687 -156417243 - AluSg SINE Alu -21 289 1 239 250 0 0 chrX 6183947 6183995 -156415935 + (TATG)n Simple_repeat Simple_repeat 1 48 0 292 275 0 0 chrX 6184346 6184426 -156415504 - MIR SINE MIR -22 240 161 1231 267 107 36 chrX 6184444 6185522 -156414408 + L1ME3A LINE L1 3854 5031 -1115 2480 125 14 3 chrX 6185522 6185882 -156414048 + THE1B LTR MaLR 1 364 0 1231 267 107 36 chrX 6185882 6186026 -156413904 + L1ME3A LINE L1 5031 5163 -983 1482 117 24 5 chrX 6186033 6186246 -156413684 + AluSq SINE Alu 1 217 -96 270 45 45 0 chrX 6186246 6186290 -156413640 + AluSq SINE Alu 251 296 -7 2221 116 0 0 chrX 6186363 6186655 -156413275 + AluSx SINE Alu 1 292 -20 1214 279 87 19 chrX 6186707 6187328 -156412602 + L1ME3A LINE L1 5326 5988 -182 67 102 0 0 chrX 6187374 6187609 -156412321 + AT_rich Low_complexity Low_complexity 1 235 0 297 127 91 0 chrX 6187609 6187664 -156412266 + HsTC2 DNA Tc2 1291 1350 -548 231 251 105 26 chrX 6187694 6187885 -156412045 + HsTC2 DNA Tc2 1589 1794 -104 31 26 0 0 chrX 6188300 6188338 -156411592 + AT_rich Low_complexity Low_complexity 1 38 0 2558 115 30 2 chrX 6188826 6189226 -156410704 + L1PA7 LINE L1 8 418 -6043 206 118 0 0 chrX 6189226 6189260 -156410670 + (TTTTTG)n Simple_repeat Simple_repeat 3 36 0 20057 78 19 1 chrX 6189282 6192984 -156406946 + L1PA7 LINE L1 2680 6446 -23 202 231 0 39 chrX 6193679 6193731 -156406199 - L2 LINE L2 -24 3248 3199 545 254 8 0 chrX 6194812 6194930 -156405000 - FLAM_A SINE Alu -13 129 11 788 171 16 144 chrX 6195031 6195288 -156404642 - MER58A DNA MER1_type 0 224 1 2258 57 0 54 chrX 6195957 6196287 -156403643 - AluY SINE Alu 0 314 1 865 151 0 0 chrX 6196293 6196419 -156403511 - FLAM_C SINE Alu -17 126 1 186 43 0 0 chrX 6196596 6196619 -156403311 + (TTTC)n Simple_repeat Simple_repeat 2 24 0 2226 92 0 17 chrX 6196621 6196913 -156403017 - AluSx SINE Alu -25 287 1 248 314 202 39 chrX 6198475 6199148 -156400782 - L2 LINE L2 -823 2491 1709 1219 312 71 10 chrX 6200145 6200655 -156399275 - L2 LINE L2 -603 2711 2171 330 195 0 0 chrX 6200994 6201071 -156398859 + (TG)n Simple_repeat Simple_repeat 2 78 0 297 240 20 40 chrX 6201071 6201221 -156398709 + (TA)n Simple_repeat Simple_repeat 1 147 0 2176 83 0 0 chrX 6202206 6202471 -156397459 + AluSx SINE Alu 23 287 -25 239 0 0 31 chrX 6202475 6202507 -156397423 + (CAAAA)n Simple_repeat Simple_repeat 3 33 0 1930 134 44 0 chrX 6203224 6203522 -156396408 + AluJo SINE Alu 1 311 -1 2496 64 0 0 chrX 6204033 6204331 -156395599 + AluY SINE Alu 1 298 -13 1868 161 3 3 chrX 6205506 6205811 -156394119 + AluJb SINE Alu 5 309 -3 4156 83 29 9 chrX 6206799 6207356 -156392574 - L1PA11 LINE L1 -1 6173 5606 1618 269 137 61 chrX 6207644 6207729 -156392201 + L2 LINE L2 1959 2036 -1277 2128 124 3 13 chrX 6207729 6208035 -156391895 - AluSx SINE Alu -9 303 1 1618 269 137 61 chrX 6208035 6208931 -156390999 + L2 LINE L2 2036 3014 -299 2239 148 62 31 chrX 6209044 6209561 -156390369 + MLT2A2 LTR ERVL 1 554 0 600 224 7 41 chrX 6209582 6209729 -156390201 + L2 LINE L2 3172 3313 0 1671 201 0 22 chrX 6210494 6210812 -156389118 + AluJo SINE Alu 1 311 -1 438 20 0 0 chrX 6211124 6211140 -156388790 + (CA)n Simple_repeat Simple_repeat 1 67 0 438 20 0 0 chrX 6211140 6211191 -156388739 + (CA)n Simple_repeat Simple_repeat 2 52 0 243 345 76 17 chrX 6211272 6211391 -156388539 - MIR3 SINE MIR -23 185 60 1364 202 0 0 chrX 6211565 6211788 -156388142 - MER58A DNA MER1_type 0 224 2 204 163 0 47 chrX 6211902 6211945 -156387985 - MIR SINE MIR -109 153 113 21 0 0 0 chrX 6214168 6214189 -156385741 + AT_rich Low_complexity Low_complexity 1 21 0 2854 105 21 9 chrX 6264528 6264955 -156334975 + MER1A DNA MER1_type 98 529 0 1798 181 10 7 chrX 6266330 6266640 -156333290 - AluJo SINE Alu -1 311 1 207 0 0 0 chrX 6268523 6268546 -156331384 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 231 128 0 43 chrX 6268810 6268857 -156331073 + L1MB2 LINE L1 6127 6171 0 2563 55 0 13 chrX 6269579 6269888 -156330042 + AluY SINE Alu 1 305 -6 2095 103 7 7 chrX 6271400 6271708 -156328222 - AluSc SINE Alu 0 308 1 222 222 0 0 chrX 6272564 6272618 -156327312 + (CACCAT)n Simple_repeat Simple_repeat 3 56 0 288 281 32 11 chrX 6272725 6272841 -156327089 - MIR SINE MIR -65 143 40 425 333 36 0 chrX 6272886 6273054 -156326876 + MER5B DNA MER1_type 1 174 -4 1692 93 68 0 chrX 6274107 6274343 -156325587 + AluSx SINE Alu 59 310 -2 277 343 57 12 chrX 6274377 6274622 -156325308 + HAL1b LINE L1 233 488 -860 532 292 72 38 chrX 6274888 6275234 -156324696 + HAL1b LINE L1 633 990 -358 237 270 45 11 chrX 6275296 6275385 -156324545 - MER68 LTR ERV1 -470 92 1 1857 155 7 17 chrX 6275505 6275801 -156324129 + AluSx SINE Alu 1 293 -19 2446 117 8 11 chrX 6277295 6277671 -156322259 + THE1C LTR MaLR 1 375 0 456 145 77 0 chrX 6277739 6277824 -156322106 + MER20 DNA MER1_type 21 112 -107 1590 129 132 4 chrX 6277824 6278173 -156321757 + LTR51 LTR ERV1 1 432 -239 * 2709 117 13 41 chrX 6278170 6278397 -156321533 + HSMAR2 DNA Mariner 854 1063 -239 2676 55 0 0 chrX 6278397 6278706 -156321224 + AluY SINE Alu 1 309 -2 2709 117 13 41 chrX 6278706 6278940 -156320990 + HSMAR2 DNA Mariner 1063 1302 0 2099 304 72 29 chrX 6278942 6279927 -156320003 + L1MEc LINE L1 117 1059 -5337 207 0 0 0 chrX 6279927 6279950 -156319980 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 2099 304 72 29 chrX 6279950 6280773 -156319157 + L1MEc LINE L1 1059 2002 -4394 924 285 65 34 chrX 6280752 6281520 -156318410 + L1MEc LINE L1 2758 3549 -2666 * 1808 161 0 55 chrX 6281866 6282196 -156317734 - AluJb SINE Alu 0 312 1 1083 145 0 0 chrX 6282309 6282468 -156317462 - AluJb SINE Alu -10 302 144 478 232 9 60 chrX 6282537 6282725 -156317205 + MER5A DNA MER1_type 9 172 -6 220 332 64 72 chrX 6282784 6283239 -156316691 + L2 LINE L2 1544 1994 -1320 47 19 0 0 chrX 6283529 6283583 -156316347 + AT_rich Low_complexity Low_complexity 1 54 0 2489 87 0 0 chrX 6283933 6284243 -156315687 + AluSg SINE Alu 1 310 0 1908 290 69 55 chrX 6284268 6285423 -156314507 + L2 LINE L2 1338 2508 -806 2327 104 0 0 chrX 6286169 6286467 -156313463 + AluSx SINE Alu 1 298 -14 307 344 17 56 chrX 6286660 6286843 -156313087 + MIR SINE MIR 16 189 -68 2311 97 6 3 chrX 6287460 6287771 -156312159 + AluSx SINE Alu 1 312 0 2456 85 0 0 chrX 6287996 6288302 -156311628 + AluSc SINE Alu 1 306 -3 890 215 0 0 chrX 6288597 6288769 -156311161 - FRAM SINE Alu -4 172 1 1000 217 30 0 chrX 6288797 6289000 -156310930 - MER58A DNA MER1_type -11 213 5 1648 161 4 4 chrX 6289755 6290015 -156309915 + AluSx SINE Alu 1 260 -52 286 332 90 10 chrX 6290280 6290475 -156309455 - MIR3 SINE MIR -34 228 20 * 356 318 56 8 chrX 6290471 6290597 -156309333 + L2 LINE L2 3182 3313 0 801 148 24 0 chrX 6291574 6291743 -156308187 + (TGGA)n Simple_repeat Simple_repeat 3 175 0 2431 96 3 0 chrX 6292675 6292987 -156306943 - AluSq SINE Alu 0 313 1 229 148 49 37 chrX 6293410 6293491 -156306439 + (TA)n Simple_repeat Simple_repeat 1 82 0 2169 129 0 3 chrX 6293497 6293807 -156306123 + AluSx SINE Alu 1 309 -3 431 328 33 0 chrX 6294314 6294497 -156305433 + MER5A DNA MER1_type 1 189 0 2459 97 0 0 chrX 6294502 6294812 -156305118 + AluY SINE Alu 1 310 -1 24 32 0 0 chrX 6295052 6295083 -156304847 + AT_rich Low_complexity Low_complexity 1 31 0 2594 55 0 6 chrX 6295249 6295560 -156304370 + AluY SINE Alu 1 309 -2 24 0 0 0 chrX 6295895 6295919 -156304011 + AT_rich Low_complexity Low_complexity 1 24 0 3200 161 13 28 chrX 6296551 6297200 -156302730 + MER41B LTR ERV1 1 467 -11 1711 192 31 7 chrX 6297638 6297929 -156302001 + AluJo SINE Alu 1 298 -14 2021 131 3 32 chrX 6298819 6299157 -156300773 + AluSx SINE Alu 1 312 0 226 372 75 21 chrX 6299661 6299900 -156300030 - L2 LINE L2 -819 2495 2244 218 353 17 26 chrX 6299940 6300056 -156299874 - L2 LINE L2 0 3313 3199 181 338 90 54 chrX 6300835 6301057 -156298873 + MIR SINE MIR 20 249 -13 1809 193 41 131 chrX 6302250 6302912 -156297018 + L1MC4 LINE L1 7299 7900 -142 256 219 24 0 chrX 6302916 6302998 -156296932 + (TATATG)n Simple_repeat Simple_repeat 1 84 0 213 219 0 0 chrX 6303032 6303073 -156296857 + A-rich Low_complexity Low_complexity 2 42 0 978 188 45 6 chrX 6303089 6303265 -156296665 + MER58A DNA MER1_type 4 186 -38 37 52 0 0 chrX 6303352 6303410 -156296520 + AT_rich Low_complexity Low_complexity 1 58 0 839 203 91 0 chrX 6306173 6306360 -156293570 + MER3 DNA MER1_type 1 204 -5 284 230 40 0 chrX 6306818 6306892 -156293038 + LTR33A LTR ERVL 444 520 -3 1888 222 26 38 chrX 6310691 6311217 -156288713 + L1MB8 LINE L1 5659 6178 0 188 253 46 58 chrX 6311438 6311525 -156288405 - MER5A DNA MER1_type -69 120 35 * 212 195 24 0 chrX 6311503 6311544 -156288386 + MER5A DNA MER1_type 145 186 -3 4823 118 63 34 chrX 6312063 6312820 -156287110 + MER4E LTR ERV1 1 779 0 5905 102 26 21 chrX 6312897 6313754 -156286176 + MER4D LTR ERV1 12 872 0 1522 118 45 115 chrX 6314301 6314615 -156285315 - AluSq SINE Alu -21 292 1 1030 70 7 42 chrX 6314617 6314759 -156285171 - AluSq/x SINE Alu -169 143 7 911 163 0 7 chrX 6314859 6315006 -156284924 - AluJb SINE Alu -23 289 144 2053 146 0 3 chrX 6315326 6315627 -156284303 + AluSx SINE Alu 6 305 -7 838 212 98 20 chrX 6315765 6315968 -156283962 - MER20 DNA MER1_type 0 219 1 2196 113 10 0 chrX 6316850 6317151 -156282779 + AluSq SINE Alu 1 304 -9 287 316 0 43 chrX 6317982 6318099 -156281831 - MIR SINE MIR -67 141 30 193 273 156 26 chrX 6318228 6318305 -156281625 + L2 LINE L2 3204 3290 -23 610 191 84 0 chrX 6318499 6318630 -156281300 + MER69 DNA AcHobo 6 147 -1079 1689 136 0 12 chrX 6319150 6319400 -156280530 + AluSq SINE Alu 44 290 -23 1581 168 9 58 chrX 6320607 6320934 -156278996 - AluJo SINE Alu -1 311 1 180 0 0 0 chrX 6321517 6321537 -156278393 + (TTTA)n Simple_repeat Simple_repeat 2 21 0 2075 136 0 0 chrX 6321540 6321827 -156278103 - AluSx SINE Alu -25 287 1 335 185 123 0 chrX 6322136 6322217 -156277713 + L2 LINE L2 2450 2540 -774 * 493 316 91 38 chrX 6322196 6322538 -156277392 + L2 LINE L2 2953 3312 -1 954 219 61 114 chrX 6323429 6323665 -156276265 + MER58B DNA MER1_type 1 213 -2207 3767 128 0 26 chrX 6323665 6324205 -156275725 - MER1A DNA MER1_type -1 526 1 954 219 61 114 chrX 6324205 6324328 -156275602 + MER58B DNA MER1_type 213 341 0 198 306 24 24 chrX 6324328 6324413 -156275517 + L2 LINE L2 3187 3271 -1 290 293 158 8 chrX 6324940 6325073 -156274857 + MIR SINE MIR 8 160 -102 748 289 94 61 chrX 6325552 6326075 -156273855 + MER77 LTR ERV1 55 594 -11 2366 87 10 0 chrX 6326139 6326438 -156273492 - AluSg SINE Alu -8 302 1 431 284 49 49 chrX 6326615 6326798 -156273132 - LTR16C LTR ERVL -229 262 80 1593 152 3 91 chrX 6327477 6327618 -156272312 + AluJo SINE Alu 1 102 -210 2266 88 10 10 chrX 6327618 6327915 -156272015 + AluSg SINE Alu 1 297 -13 1593 152 3 91 chrX 6327915 6328082 -156271848 + AluJo SINE Alu 102 282 -30 866 123 19 9 chrX 6328082 6328302 -156271628 + CT-rich Low_complexity Low_complexity 1 222 0 2099 141 13 0 chrX 6328302 6328600 -156271330 - AluSx SINE Alu -10 302 1 868 135 0 30 chrX 6329164 6329297 -156270633 + FLAM_C SINE Alu 1 129 -4 1387 158 4 4 chrX 6329640 6329868 -156270062 - MLT1B LTR MaLR -4 386 159 2265 140 17 13 chrX 6329869 6330258 -156269672 - MLT1B LTR MaLR 0 396 1 1679 194 3 50 chrX 6330859 6330895 -156269035 - MER58B DNA MER1_type -2094 326 290 746 257 41 0 chrX 6330895 6331066 -156268864 + MER45A DNA AcHobo 1 178 0 1679 194 3 50 chrX 6331066 6331198 -156268732 - MER58B DNA MER1_type -2130 290 153 1890 171 138 31 chrX 6331198 6331411 -156268519 + MLT1C LTR MaLR 1 190 -277 2152 91 35 7 chrX 6331411 6331726 -156268204 + AluSq SINE Alu 1 323 0 1890 171 138 31 chrX 6331726 6331930 -156268000 + MLT1C LTR MaLR 190 465 -2 1679 194 3 50 chrX 6331930 6332101 -156267829 - MER58B DNA MER1_type -2267 153 2 2914 79 94 0 chrX 6332469 6332861 -156267069 + L1PA10 LINE L1 5728 6156 -12 2415 60 0 10 chrX 6332862 6333164 -156266766 - AluY SINE Alu -12 299 1 186 43 0 0 chrX 6333255 6333278 -156266652 + (CA)n Simple_repeat Simple_repeat 1 23 0 752 296 60 3 chrX 6333683 6334000 -156265930 + L1MC4 LINE L1 6814 7148 -894 1547 178 32 41 chrX 6334591 6334906 -156265024 + AluJo SINE Alu 1 312 0 207 0 0 0 chrX 6335954 6335977 -156263953 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 655 233 0 0 chrX 6336006 6336126 -156263804 - FLAM_A SINE Alu -17 125 6 213 259 0 52 chrX 6336528 6336586 -156263344 + MIR SINE MIR 17 71 -191 2912 87 3 0 chrX 6336708 6337077 -156262853 - L1PB1 LINE L1 0 6151 5782 395 115 14 58 chrX 6337077 6337216 -156262714 + (TA)n Simple_repeat Simple_repeat 1 133 0 554 158 0 10 chrX 6337236 6337357 -156262573 - L1PB1 LINE L1 -361 5790 5699 1366 225 70 0 chrX 6337865 6338181 -156261749 + L1MC2 LINE L1 5949 6286 -58 477 307 135 58 chrX 6339299 6339863 -156260067 + L2 LINE L2 2200 2806 -508 263 112 17 69 chrX 6340259 6340375 -156259555 + (TA)n Simple_repeat Simple_repeat 1 110 0 1622 139 64 0 chrX 6340468 6340748 -156259182 - L1MA8 LINE L1 -7 6284 5987 351 121 0 0 chrX 6340817 6340875 -156259055 + (CA)n Simple_repeat Simple_repeat 2 59 0 1758 81 36 0 chrX 6343165 6343387 -156256543 + MER30 DNA MER1_type 1 230 0 22 0 0 0 chrX 6343575 6343597 -156256333 + AT_rich Low_complexity Low_complexity 1 22 0 3198 77 12 14 chrX 6344361 6344776 -156255154 - L1PA10 LINE L1 0 6168 5755 565 259 14 66 chrX 6345681 6345800 -156254130 + MER3 DNA MER1_type 4 109 -100 1051 180 22 59 chrX 6345800 6346022 -156253908 - MER20 DNA MER1_type -4 215 2 565 259 14 66 chrX 6346022 6346114 -156253816 + MER3 DNA MER1_type 109 204 -5 984 90 8 8 chrX 6346136 6346270 -156253660 + L1MA1 LINE L1 6167 6300 -2 21 0 0 0 chrX 6347118 6347139 -156252791 + AT_rich Low_complexity Low_complexity 1 21 0 259 289 112 20 chrX 6347210 6347362 -156252568 + MIR SINE MIR 20 185 -77 26 0 0 0 chrX 6347902 6347928 -156252002 + AT_rich Low_complexity Low_complexity 1 26 0 642 179 24 0 chrX 6347947 6348070 -156251860 + L1MB3 LINE L1 5869 5994 -189 1269 120 6 0 chrX 6348260 6348443 -156251487 + L1MB2 LINE L1 5941 6124 -47 298 164 18 27 chrX 6348449 6348537 -156251393 - MER5A DNA MER1_type -99 90 4 2203 85 7 14 chrX 6348574 6348857 -156251073 + AluSx SINE Alu 25 305 -7 453 165 0 35 chrX 6348879 6348964 -156250966 - AluJ/FRAM SINE Alu -4 308 227 1267 226 49 84 chrX 6349451 6350000 -156249930 + MER34 LTR ERV1 4 533 -9 249 33 0 0 chrX 6351026 6351056 -156248874 + (CA)n Simple_repeat Simple_repeat 1 30 0 450 281 51 34 chrX 6351109 6351287 -156248643 - MIR SINE MIR -17 245 65 701 233 0 6 chrX 6351583 6351746 -156248184 + MER5A DNA MER1_type 26 187 -2 25 31 0 0 chrX 6351969 6352001 -156247929 + AT_rich Low_complexity Low_complexity 1 32 0 996 123 11 11 chrX 6354152 6354331 -156245599 + (GAAA)n Simple_repeat Simple_repeat 2 180 0 338 184 13 0 chrX 6354331 6354407 -156245523 + GA-rich Low_complexity Low_complexity 3 79 0 2037 120 3 7 chrX 6355342 6355634 -156244296 + AluSx SINE Alu 1 291 -21 23 0 0 0 chrX 6355634 6355657 -156244273 + AT_rich Low_complexity Low_complexity 1 23 0 264 30 0 0 chrX 6356097 6356130 -156243800 + (TAAA)n Simple_repeat Simple_repeat 2 34 0 324 0 0 0 chrX 6356265 6356301 -156243629 + (CA)n Simple_repeat Simple_repeat 2 37 0 202 262 0 33 chrX 6357892 6357953 -156241977 + T-rich Low_complexity Low_complexity 5 63 0 1499 179 45 4 chrX 6358086 6358206 -156241724 + AluJb SINE Alu 1 115 -197 207 0 0 0 chrX 6358206 6358229 -156241701 + (TAA)n Simple_repeat Simple_repeat 2 24 0 1499 179 45 4 chrX 6358229 6358376 -156241554 + AluJb SINE Alu 115 279 -33 445 143 0 0 chrX 6358376 6358439 -156241491 - LTR7 LTR ERV1 0 450 388 222 37 0 0 chrX 6358458 6358485 -156241445 + (GA)n Simple_repeat Simple_repeat 2 28 0 2181 80 0 0 chrX 6359747 6360009 -156239921 - AluSg SINE Alu -14 296 35 729 196 75 121 chrX 6360023 6360171 -156239759 - LTR37A LTR ERV1 -22 404 251 417 39 0 0 chrX 6360171 6360222 -156239708 + (TGGA)n Simple_repeat Simple_repeat 3 53 0 729 196 75 121 chrX 6360222 6360420 -156239510 - LTR37A LTR ERV1 -175 251 74 1470 235 37 3 chrX 6360751 6361079 -156238851 + MER58B DNA MER1_type 2 340 -1 332 254 37 15 chrX 6361122 6361233 -156238697 + LTR48B LTR ERV1 1 108 -514 1010 217 60 63 chrX 6361260 6361658 -156238272 + MER39 LTR ERV1 113 584 -1 260 369 10 10 chrX 6361866 6361969 -156237961 + MIR3 SINE MIR 91 193 -15 1989 115 49 0 chrX 6362405 6362693 -156237237 - AluSc SINE Alu -7 302 1 201 290 72 29 chrX 6362787 6362856 -156237074 + L2 LINE L2 3192 3263 -9 2149 127 3 0 chrX 6363058 6363358 -156236572 + AluSq SINE Alu 1 301 -12 2057 126 0 0 chrX 6363701 6363987 -156235943 + AluSx SINE Alu 1 286 -26 180 0 0 0 chrX 6364371 6364391 -156235539 + (A)n Simple_repeat Simple_repeat 1 20 0 898 273 87 72 chrX 6364696 6365154 -156234776 - MLT1J LTR MaLR -45 466 2 189 256 0 0 chrX 6365201 6365244 -156234686 + L2 LINE L2 3210 3252 -20 1204 199 19 5 chrX 6365331 6365547 -156234383 - MER20 DNA MER1_type 0 219 1 241 216 20 0 chrX 6365664 6365715 -156234215 - MER65C LTR ERV1 -3 458 407 1555 113 0 5 chrX 6365715 6365937 -156233993 + AluSg/x SINE Alu 83 303 -7 496 282 77 29 chrX 6365997 6366270 -156233660 - L2 LINE L2 -529 2785 2500 497 255 62 0 chrX 6368191 6368336 -156231594 + L1MD2 LINE L1 6194 6347 -12 21 0 0 0 chrX 6368476 6368497 -156231433 + AT_rich Low_complexity Low_complexity 1 21 0 2091 141 160 19 chrX 6368838 6369213 -156230717 - MSTA LTR MaLR 0 428 1 255 398 0 0 chrX 6369254 6369372 -156230558 + MIR SINE MIR 84 201 -61 2305 101 3 3 chrX 6369398 6369705 -156230225 + AluSq SINE Alu 1 307 -6 1556 151 107 46 chrX 6370048 6370439 -156229491 - L1MB7 LINE L1 -8 6176 5762 224 338 78 7 chrX 6372089 6372243 -156227687 - MIR SINE MIR -29 233 69 2886 91 11 3 chrX 6372584 6372945 -156226985 + THE1B LTR MaLR 1 364 0 1776 117 40 7 chrX 6375131 6375404 -156224526 + L1MC1 LINE L1 6051 6332 -1 243 325 36 73 chrX 6375636 6375938 -156223992 + L2 LINE L2 3023 3313 0 23 54 0 0 chrX 6376167 6376204 -156223726 + AT_rich Low_complexity Low_complexity 1 37 0 1154 187 0 0 chrX 6376250 6376448 -156223482 - MER2 DNA MER2_type -107 238 41 2135 129 0 0 chrX 6376615 6376918 -156223012 + AluSg SINE Alu 1 303 -7 322 153 65 48 chrX 6376954 6376970 -156222960 + L1M1 LINE L1 5751 5765 -535 7685 43 4 6 chrX 6376970 6377949 -156221981 + L1PA7 LINE L1 5177 6154 0 322 153 65 48 chrX 6377949 6378025 -156221905 + L1M1 LINE L1 5765 5847 -453 691 147 0 0 chrX 6378143 6378245 -156221685 - AluJb SINE Alu -6 306 205 2460 74 0 0 chrX 6378603 6378901 -156221029 - AluY SINE Alu -13 298 1 193 314 0 0 chrX 6379966 6380017 -156219913 - MIR3 SINE MIR -49 159 109 1839 199 88 28 chrX 6380690 6381121 -156218809 - MLT1C LTR MaLR -4 463 7 527 314 64 6 chrX 6382038 6382210 -156217720 + MER5A DNA MER1_type 1 182 -7 2560 77 0 0 chrX 6382273 6382584 -156217346 - AluSx SINE Alu -1 311 1 1597 153 7 49 chrX 6383942 6384230 -156215700 - AluJo SINE Alu -16 296 21 625 205 27 0 chrX 6384445 6384557 -156215373 - FLAM_A SINE Alu -17 125 11 236 281 0 0 chrX 6385390 6385454 -156214476 + L2 LINE L2 3186 3249 -23 257 67 0 44 chrX 6385530 6385575 -156214355 + (CAGAGA)n Simple_repeat Simple_repeat 4 46 0 702 182 28 45 chrX 6385616 6385792 -156214138 + MER20 DNA MER1_type 47 219 0 242 194 48 0 chrX 6386306 6386368 -156213562 + GA-rich Low_complexity Low_complexity 2 66 0 891 126 0 44 chrX 6386400 6386535 -156213395 + FLAM_C SINE Alu 1 129 -4 1253 166 9 14 chrX 6386539 6386762 -156213168 + AluJo SINE Alu 87 308 -4 812 190 6 13 chrX 6386874 6387032 -156212898 - FRAM SINE Alu -19 157 1 2003 123 0 0 chrX 6388084 6388352 -156211578 - AluSx SINE Alu -44 268 1 1371 189 9 84 chrX 6389291 6389613 -156210317 + AluJo SINE Alu 1 298 -14 304 288 93 0 chrX 6390026 6390144 -156209786 + MIR SINE MIR 80 208 -54 5093 81 59 4 chrX 6390885 6391246 -156208684 - L1PB1 LINE L1 -7 6144 5804 321 26 0 0 chrX 6391246 6391284 -156208646 + (CA)n Simple_repeat Simple_repeat 2 39 0 5093 81 59 4 chrX 6391284 6391600 -156208330 - L1PB1 LINE L1 -347 5804 5430 2353 164 12 16 chrX 6391600 6392175 -156207755 + L1PB1 LINE L1 4860 5434 -717 794 268 65 58 chrX 6392949 6393349 -156206581 - LTR16A1 LTR ERVL 0 457 55 972 137 0 0 chrX 6394182 6394438 -156205492 + (TA)n Simple_repeat Simple_repeat 1 256 0 1345 310 107 34 chrX 6395707 6396391 -156203539 + MER45C DNA AcHobo 4 737 -216 1214 208 44 14 chrX 6396486 6396779 -156203151 + MER45B DNA AcHobo 739 1040 0 337 241 12 0 chrX 6396925 6397008 -156202922 + MIR SINE MIR 153 236 -26 2250 89 23 0 chrX 6398063 6398365 -156201565 - AluSx SINE Alu -3 309 1 243 0 0 0 chrX 6398384 6398411 -156201519 + (A)n Simple_repeat Simple_repeat 1 27 0 21 0 0 0 chrX 6400619 6400640 -156199290 + GC_rich Low_complexity Low_complexity 1 21 0 180 0 0 0 chrX 6401453 6401473 -156198457 + (TCCC)n Simple_repeat Simple_repeat 1 20 0 307 284 189 0 chrX 6402337 6402432 -156197498 + MER45 DNA AcHobo 1 113 -1468 1577 146 75 14 chrX 6402436 6402716 -156197214 + MER1B DNA MER1_type 42 338 -1 2412 61 7 0 chrX 6403020 6403313 -156196617 - AluY SINE Alu -16 295 1 21 36 0 0 chrX 6403660 6403688 -156196242 + AT_rich Low_complexity Low_complexity 1 28 0 225 269 0 0 chrX 6404313 6404380 -156195550 + T-rich Low_complexity Low_complexity 1 67 0 420 301 19 19 chrX 6404387 6404543 -156195387 - MER5A DNA MER1_type -25 164 9 1821 169 0 22 chrX 6404571 6404890 -156195040 + AluJb SINE Alu 1 312 0 1749 68 119 12 chrX 6406247 6406534 -156193396 + AluSc SINE Alu 1 314 0 886 185 90 19 chrX 6408484 6408518 -156191412 + AluJo SINE Alu 87 117 -195 207 0 0 0 chrX 6408518 6408541 -156191389 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 886 185 90 19 chrX 6408541 6408717 -156191213 + AluJo SINE Alu 117 312 0 473 31 0 16 chrX 6409355 6409419 -156190511 + (TAGA)n Simple_repeat Simple_repeat 4 66 0 25 31 0 0 chrX 6409501 6409533 -156190397 + AT_rich Low_complexity Low_complexity 1 32 0 380 270 67 105 chrX 6409570 6409725 -156190205 - L1MEc LINE L1 -4439 2126 1960 2503 68 3 3 chrX 6409725 6410033 -156189897 - AluSp SINE Alu -5 308 1 380 270 67 105 chrX 6410033 6410162 -156189768 - L1MEc LINE L1 -4605 1960 1828 428 289 50 39 chrX 6411021 6411201 -156188729 + MIR SINE MIR 17 198 -64 2014 102 3 94 chrX 6412290 6412654 -156187276 + AluSx SINE Alu 1 312 0 327 359 5 10 chrX 6412674 6412872 -156187058 + L1ME3A LINE L1 5150 5346 -800 759 182 15 30 chrX 6413068 6413200 -156186730 - FLAM_A SINE Alu -3 130 1 459 334 36 17 chrX 6413210 6413512 -156186418 + L1ME3A LINE L1 5525 5832 -338 2082 112 14 0 chrX 6413654 6413948 -156185982 + AluSx SINE Alu 1 298 -14 180 0 0 0 chrX 6414351 6414371 -156185559 + (TTTG)n Simple_repeat Simple_repeat 2 21 0 1048 154 0 17 chrX 6414675 6414850 -156185080 - L1PB1 LINE L1 -2 6149 5978 3322 104 17 0 chrX 6414853 6415313 -156184617 + L1PB1 LINE L1 5499 5966 -185 216 333 21 21 chrX 6415389 6415485 -156184445 - L2 LINE L2 -1065 2249 2154 369 167 0 0 chrX 6415883 6415961 -156183969 + GA-rich Low_complexity Low_complexity 1 78 0 1494 12 0 0 chrX 6416056 6416217 -156183713 - L1PA2 LINE L1 0 6155 5995 1905 147 24 3 chrX 6416279 6416596 -156183334 - AluSx SINE Alu 0 324 2 207 0 0 0 chrX 6416691 6416714 -156183216 + (TTA)n Simple_repeat Simple_repeat 1 23 0 2409 61 0 29 chrX 6417036 6417347 -156182583 - AluY SINE Alu -9 302 1 418 266 55 0 chrX 6417394 6417522 -156182408 - MER5B DNA MER1_type -40 138 4 818 221 42 32 chrX 6417602 6417819 -156182111 - MER20 DNA MER1_type 0 219 1 280 169 26 0 chrX 6417917 6417994 -156181936 + (CA)n Simple_repeat Simple_repeat 2 80 0 270 303 83 18 chrX 6418489 6418598 -156181332 - L2 LINE L2 0 3313 3198 1891 267 56 14 chrX 6419150 6419720 -156180210 - HERVL40 LTR ERVL -2411 3119 2526 599 286 84 64 chrX 6419721 6420175 -156179755 - HERVL40 LTR ERVL -3918 1612 1150 682 261 22 27 chrX 6420270 6420492 -156179438 - HsTC2 DNA Tc2 -1177 721 501 448 294 68 28 chrX 6420500 6420677 -156179253 - HsTC2 DNA Tc2 -1684 214 31 1384 174 50 43 chrX 6420690 6421005 -156178925 + AluJb SINE Alu 1 317 0 735 207 0 22 chrX 6422166 6422301 -156177629 - FLAM_C SINE Alu 0 133 2 189 317 174 6 chrX 6422451 6422612 -156177318 + L2 LINE L2 2851 3038 -275 23 54 0 0 chrX 6422856 6422893 -156177037 + AT_rich Low_complexity Low_complexity 1 37 0 359 247 141 107 chrX 6422927 6423190 -156176740 + L2 LINE L2 3042 3313 0 225 364 56 48 chrX 6423400 6423631 -156176299 + L2 LINE L2 2892 3124 -189 231 278 113 15 chrX 6423912 6424045 -156175885 + LTR33A LTR ERVL 222 367 -156 234 359 13 0 chrX 6424428 6424506 -156175424 + L2 LINE L2 3193 3271 -1 673 277 75 65 chrX 6425318 6425795 -156174135 + REP3 LTR ERV 48 529 -33 3807 119 2 0 chrX 6426045 6426574 -156173356 - LTR26B LTR ERV1 0 531 2 2774 152 18 7 chrX 6427515 6427955 -156171975 + MER65A LTR ERV1 1 445 0 1167 142 40 44 chrX 6428268 6428493 -156171437 + L1MB7 LINE L1 5945 6168 -16 772 361 53 17 chrX 6428555 6429026 -156170904 - L3 LINE CR1 -41 1536 1049 784 205 66 0 chrX 6429118 6429284 -156170646 + MER53 DNA DNA 1 177 -12 3356 205 47 7 chrX 6429291 6429998 -156169932 - L1MC1 LINE L1 -10 6323 5589 213 39 0 0 chrX 6430119 6430145 -156169785 + (TTCA)n Simple_repeat Simple_repeat 3 28 0 2349 100 7 0 chrX 6431641 6431950 -156167980 - AluSq SINE Alu -2 311 1 1407 196 68 18 chrX 6432339 6432676 -156167254 + L1MA4 LINE L1 5941 6294 -6 219 325 95 16 chrX 6432695 6432821 -156167109 - MIR SINE MIR -2 260 125 936 227 19 0 chrX 6433661 6433868 -156166062 + L1MC1 LINE L1 6113 6323 -10 274 231 22 44 chrX 6433905 6433996 -156165934 + L1MC4 LINE L1 6615 6703 -1339 204 250 0 0 chrX 6433996 6434060 -156165870 + (CA)n Simple_repeat Simple_repeat 2 65 0 225 235 74 0 chrX 6434775 6434856 -156165074 + PABL_A LTR ERV1 422 508 -152 3848 117 0 8 chrX 6435170 6435685 -156164245 - MER9 LTR ERVK 0 511 1 2572 210 12 58 chrX 6436723 6437342 -156162588 - LTR9 LTR ERV1 -31 581 4 1221 140 31 0 chrX 6437345 6437538 -156162392 - HUERS-P3 LTR ERV1 -1 8918 8720 932 153 17 6 chrX 6437692 6437868 -156162062 - HUERS-P3b LTR ERV1 -2450 2565 2388 13590 159 35 51 chrX 6437876 6439674 -156160256 - HUERS-P3b LTR ERV1 -343 6653 5124 460 16 0 31 chrX 6439674 6439738 -156160192 - L1PA2 LINE L1 0 6155 6094 13590 159 35 51 chrX 6439738 6441493 -156158437 - HUERS-P3b LTR ERV1 -1872 5124 3342 6947 111 11 32 chrX 6441506 6447690 -156152240 + L1PA8 LINE L1 12 6162 -10 234 188 0 0 chrX 6447695 6447743 -156152187 + A-rich Low_complexity Low_complexity 1 48 0 438 286 83 62 chrX 6448830 6449495 -156150435 + L1M4 LINE L1 2248 2926 -3220 180 0 0 0 chrX 6449661 6449681 -156150249 + (TG)n Simple_repeat Simple_repeat 1 20 0 260 279 13 0 chrX 6449739 6449818 -156150112 + L1MC5 LINE L1 7809 7888 -73 632 332 99 42 chrX 6449939 6450364 -156149566 - L1MC4a LINE L1 -1839 5969 5521 423 0 0 0 chrX 6450769 6450816 -156149114 + (TTTA)n Simple_repeat Simple_repeat 2 48 0 2276 94 108 6 chrX 6450818 6451179 -156148751 - LTR7 LTR ERV1 -42 408 11 351 67 0 0 chrX 6451208 6451253 -156148677 + L1P5 LINE L1 5575 5619 -532 185 277 0 92 chrX 6451426 6451491 -156148439 + MIR SINE MIR 20 78 -184 342 173 376 8 chrX 6451501 6451634 -156148296 + MER5A DNA MER1_type 8 189 0 459 269 64 19 chrX 6451637 6451793 -156148137 + MIR SINE MIR 84 246 -16 1255 63 32 53 chrX 6453222 6453411 -156146519 + L1PB1 LINE L1 5607 5791 -360 2659 106 3 8 chrX 6453473 6453842 -156146088 + L1PB1 LINE L1 5782 6148 -3 30 27 0 0 chrX 6453842 6453879 -156146051 + AT_rich Low_complexity Low_complexity 1 37 0 677 140 123 9 chrX 6454334 6454448 -156145482 + AluJb SINE Alu 2 127 -185 27 0 0 0 chrX 6454453 6454480 -156145450 + AT_rich Low_complexity Low_complexity 1 27 0 34 65 0 0 chrX 6455573 6455635 -156144295 + AT_rich Low_complexity Low_complexity 1 62 0 1121 191 0 0 chrX 6455757 6456068 -156143862 + AluJo SINE Alu 95 405 0 1253 148 5 24 chrX 6456083 6456293 -156143637 + AluJo SINE Alu 1 206 -106 767 168 0 0 chrX 6456573 6456692 -156143238 - FLAM_C SINE Alu -20 123 5 1047 261 24 62 chrX 6456745 6457212 -156142718 + MLT1D LTR MaLR 3 451 -54 1770 169 33 8 chrX 6457242 6457610 -156142320 - L1MA8 LINE L1 -6 6285 5909 1537 210 14 0 chrX 6457610 6457905 -156142025 + AluJo SINE Alu 1 299 -13 2327 88 0 3 chrX 6459156 6459450 -156140480 - AluSx SINE Alu -18 294 2 213 364 116 24 chrX 6461013 6461263 -156138667 - L2 LINE L2 -649 2665 2393 753 109 78 8 chrX 6461922 6462050 -156137880 - MER85 DNA T2_type 0 139 3 665 260 11 6 chrX 6462796 6462977 -156136953 + L2 LINE L2 669 850 -2464 559 268 44 16 chrX 6463053 6463236 -156136694 - MIR SINE MIR -74 188 1 448 284 185 30 chrX 6463259 6463621 -156136309 + L2 LINE L2 872 1289 -2025 846 183 0 0 chrX 6463755 6463924 -156136006 + CT-rich Low_complexity Low_complexity 3 171 0 402 108 0 0 chrX 6463937 6464011 -156135919 + (CTG)n Simple_repeat Simple_repeat 2 75 0 1423 107 19 0 chrX 6466258 6466473 -156133457 + L1PA15 LINE L1 5941 6159 -6 318 262 148 96 chrX 6467938 6468599 -156131331 + L1M2 LINE L1 718 1250 -5599 288 252 0 39 chrX 6469355 6469458 -156130472 + C-rich Low_complexity Low_complexity 3 101 0 306 274 148 100 chrX 6469468 6470048 -156129882 + L1M2 LINE L1 718 1325 -5524 2206 111 0 3 chrX 6470476 6470783 -156129147 - AluSx SINE Alu -2 310 5 1756 137 22 4 chrX 6471378 6471693 -156128237 + AluSx SINE Alu 1 320 0 1750 189 58 11 chrX 6471959 6472339 -156127591 - MER77 LTR ERV1 -206 399 2 243 0 0 0 chrX 6472375 6472402 -156127528 + (TC)n Simple_repeat Simple_repeat 2 28 0 854 137 8 8 chrX 6473503 6473634 -156126296 + FLAM_C SINE Alu 1 131 -2 21 0 0 0 chrX 6474633 6474654 -156125276 + AT_rich Low_complexity Low_complexity 1 21 0 216 67 0 0 chrX 6474853 6474883 -156125047 + (TTCA)n Simple_repeat Simple_repeat 2 31 0 209 347 0 14 chrX 6474885 6474957 -156124973 - L2 LINE L2 -2 3311 3241 809 192 77 24 chrX 6475398 6475606 -156124324 + MER20 DNA MER1_type 1 219 0 303 358 133 22 chrX 6475886 6476336 -156123594 - L2 LINE L2 -640 2674 2175 188 189 54 0 chrX 6476363 6476400 -156123530 - L2 LINE L2 -10 3303 3265 241 320 18 0 chrX 6476411 6476525 -156123405 - MIR SINE MIR -45 163 44 249 194 26 58 chrX 6477416 6477571 -156122359 + (TTA)n Simple_repeat Simple_repeat 2 151 0 242 273 40 30 chrX 6477644 6477743 -156122187 - Charlie2 DNA MER1_type -2762 100 1 620 311 68 0 chrX 6477890 6478125 -156121805 - MIR SINE MIR -10 252 2 438 20 0 0 chrX 6478653 6478704 -156121226 + (CA)n Simple_repeat Simple_repeat 2 52 0 2905 216 171 4 chrX 6478736 6479649 -156120281 - Tigger6a DNA MER2_type -17 1066 2 371 273 117 0 chrX 6479704 6479832 -156120098 - MIR SINE MIR -107 155 13 2182 113 0 0 chrX 6479845 6480138 -156119792 - AluSx SINE Alu -19 293 1 233 229 0 0 chrX 6480469 6480517 -156119413 - L2 LINE L2 -9 3304 3257 1491 186 34 8 chrX 6480626 6481037 -156118893 - LTR19A LTR ERV1 -8 478 1 387 138 0 25 chrX 6481260 6481340 -156118590 + MER53 DNA DNA 100 177 -12 * 462 121 0 44 chrX 6481269 6481360 -156118570 - MER53 DNA DNA -98 91 5 795 230 14 23 chrX 6481766 6481983 -156117947 - MER58A DNA MER1_type -6 218 4 227 351 47 12 chrX 6482253 6482424 -156117506 + HAL1 LINE L1 17 193 -2314 2637 227 84 52 chrX 6482490 6483576 -156116354 + Charlie2a DNA MER1_type 427 1635 -1227 1350 182 60 43 chrX 6483576 6483878 -156116052 - AluJo SINE Alu -5 307 1 2637 227 84 52 chrX 6483878 6484201 -156115729 + Charlie2a DNA MER1_type 1635 1946 -916 821 186 62 38 chrX 6484210 6484420 -156115510 + MER20 DNA MER1_type 2 216 -3 1591 237 21 42 chrX 6484464 6485114 -156114816 + Charlie2a DNA MER1_type 2226 2862 0 489 76 0 0 chrX 6485683 6485749 -156114181 + (CA)n Simple_repeat Simple_repeat 1 66 0 22 35 0 0 chrX 6485926 6485955 -156113975 + AT_rich Low_complexity Low_complexity 1 29 0 423 56 0 0 chrX 6487360 6487414 -156112516 + (CAT)n Simple_repeat Simple_repeat 3 56 0 369 0 0 0 chrX 6488076 6488117 -156111813 + (CA)n Simple_repeat Simple_repeat 1 41 0 323 78 20 0 chrX 6488130 6488181 -156111749 + (TA)n Simple_repeat Simple_repeat 1 52 0 842 129 7 0 chrX 6489721 6489861 -156110069 + (CAT)n Simple_repeat Simple_repeat 3 143 0 1991 130 0 3 chrX 6491628 6491940 -156107990 - AluSx SINE Alu 0 311 1 337 265 24 0 chrX 6491975 6492058 -156107872 - MER81 DNA DNA -4 110 26 654 294 94 43 chrX 6492070 6492539 -156107391 - L1MC5 LINE L1 -208 7753 7261 343 352 15 15 chrX 6492767 6492966 -156106964 - L1MC5 LINE L1 -791 7170 6972 668 278 53 17 chrX 6494318 6494617 -156105313 + L1ME4a LINE L1 5523 5832 -289 312 221 21 62 chrX 6494693 6494838 -156105092 + L1ME4a LINE L1 5968 6106 -15 789 291 17 60 chrX 6494869 6495004 -156104926 + L1ME3A LINE L1 5573 5712 -458 651 189 16 0 chrX 6495004 6495131 -156104799 + L1MB5 LINE L1 6035 6163 -11 789 291 17 60 chrX 6495131 6495567 -156104363 + L1ME3A LINE L1 5712 6113 -57 2262 88 0 0 chrX 6496551 6496836 -156103094 + AluSq SINE Alu 1 285 -28 213 39 0 0 chrX 6496836 6496862 -156103068 + (TTAA)n Simple_repeat Simple_repeat 3 28 0 309 135 0 0 chrX 6497103 6497155 -156102775 + (TG)n Simple_repeat Simple_repeat 2 53 0 305 244 116 23 chrX 6498526 6498612 -156101318 - L2 LINE L2 -31 3241 3148 2461 79 3 0 chrX 6500165 6500468 -156099462 + AluSx SINE Alu 1 304 -8 432 128 0 0 chrX 6501034 6501112 -156098818 + (CA)n Simple_repeat Simple_repeat 1 78 0 901 155 37 5 chrX 6501366 6501553 -156098377 + L1MB4 LINE L1 5946 6138 -42 1275 279 83 2 chrX 6502328 6502924 -156097006 - L1ME3 LINE L1 -2 6162 5524 23 33 0 0 chrX 6502970 6503000 -156096930 + AT_rich Low_complexity Low_complexity 1 30 0 234 323 82 62 chrX 6503036 6503327 -156096603 - L2 LINE L2 0 3313 3017 193 340 75 38 chrX 6504509 6504615 -156095315 + L2 LINE L2 3162 3271 -1 211 308 206 62 chrX 6504955 6505018 -156094912 + L2 LINE L2 1600 1653 -1661 1294 222 21 21 chrX 6505018 6505306 -156094624 - AluJo SINE Alu -24 288 1 211 308 206 62 chrX 6505306 6505664 -156094266 + L2 LINE L2 1653 2082 -1232 756 243 5 36 chrX 6505843 6506065 -156093865 + MER58A DNA MER1_type 7 221 -3 511 321 126 40 chrX 6506118 6506807 -156093123 + L2 LINE L2 2262 3030 -242 26 30 0 0 chrX 6507337 6507370 -156092560 + AT_rich Low_complexity Low_complexity 1 33 0 23 0 0 0 chrX 6507509 6507532 -156092398 + AT_rich Low_complexity Low_complexity 1 23 0 23 0 0 0 chrX 6508249 6508272 -156091658 + AT_rich Low_complexity Low_complexity 1 23 0 753 204 47 13 chrX 6508402 6508637 -156091293 - LTR37A LTR ERV1 0 426 184 938 164 13 6 chrX 6508962 6509121 -156090809 - FRAM SINE Alu -22 154 1 220 254 17 0 chrX 6509125 6509184 -156090746 + (TA)n Simple_repeat Simple_repeat 2 61 0 2099 224 73 32 chrX 6510814 6511404 -156088526 + MLT1E2 LTR MaLR 1 614 -12 225 65 0 0 chrX 6512219 6512250 -156087680 + (TG)n Simple_repeat Simple_repeat 1 31 0 1099 86 0 0 chrX 6513233 6513372 -156086558 + AluSg/x SINE Alu 159 297 -13 248 260 115 77 chrX 6513404 6513481 -156086449 - LTR16A1 LTR ERVL 0 457 384 2267 92 7 0 chrX 6513481 6513785 -156086145 + AluSx SINE Alu 1 306 -6 248 260 115 77 chrX 6513785 6513942 -156085988 - LTR16A1 LTR ERVL -73 384 214 904 114 0 0 chrX 6514140 6514263 -156085667 + AluSp/q SINE Alu 173 295 -18 253 303 133 36 chrX 6514398 6514593 -156085337 + MIR SINE MIR 31 244 -18 333 243 7 13 chrX 6514745 6514897 -156085033 + CT-rich Low_complexity Low_complexity 2 152 0 231 342 99 12 chrX 6515135 6515296 -156084634 + MIR SINE MIR 34 208 -54 227 231 0 0 chrX 6515374 6515413 -156084517 - L2 LINE L2 -26 3246 3208 2318 81 0 0 chrX 6515434 6515719 -156084211 + AluSp SINE Alu 20 304 -9 638 220 0 68 chrX 6517400 6517577 -156082353 + MLT2C1 LTR ERVL 1 165 -232 547 238 6 55 chrX 6517488 6517669 -156082261 + MLT1D LTR MaLR 76 247 -258 * 1112 144 93 84 chrX 6517674 6518008 -156081922 + LTR24C LTR ERV1 1 337 -298 906 158 68 0 chrX 6518012 6518158 -156081772 - FRAM SINE Alu -21 155 1 822 225 47 36 chrX 6518159 6518435 -156081495 + LTR24C LTR ERV1 291 635 0 1146 206 12 8 chrX 6518436 6518683 -156081247 + MLT1D LTR MaLR 258 505 0 1545 209 146 75 chrX 6519013 6519624 -156080306 + MLT1E1 LTR MaLR 1 654 0 881 138 15 0 chrX 6520470 6520600 -156079330 + FLAM_C SINE Alu 1 132 -11 23 0 0 0 chrX 6521177 6521200 -156078730 + AT_rich Low_complexity Low_complexity 1 23 0 577 136 30 8 chrX 6521876 6522008 -156077922 + (TAGA)n Simple_repeat Simple_repeat 4 138 0 1501 194 110 11 chrX 6522018 6522390 -156077540 - MLT2C2 LTR ERVL -55 409 1 461 287 8 0 chrX 6522527 6522649 -156077281 - L2 LINE L2 0 3313 3191 972 207 103 0 chrX 6522651 6522854 -156077076 + MER58A DNA MER1_type 1 224 0 323 351 55 25 chrX 6523433 6523635 -156076295 - MIR SINE MIR -9 253 46 300 358 106 6 chrX 6523841 6524020 -156075910 + L3 LINE CR1 923 1119 -458 229 257 0 0 chrX 6525444 6525514 -156074416 + (CAT)n Simple_repeat Simple_repeat 3 72 0 494 151 0 0 chrX 6525708 6525794 -156074136 + MIR SINE MIR 48 133 -129 317 303 68 8 chrX 6526160 6526292 -156073638 - MIR SINE MIR -63 199 60 2243 108 0 3 chrX 6527663 6527970 -156071960 - AluSq SINE Alu -7 306 1 879 214 29 29 chrX 6528506 6528712 -156071218 + MER3 DNA MER1_type 4 209 0 360 0 0 0 chrX 6530044 6530084 -156069846 + (TG)n Simple_repeat Simple_repeat 2 41 0 1287 254 60 9 chrX 6530456 6530890 -156069040 - MLT1C LTR MaLR 0 467 12 188 317 83 0 chrX 6531189 6531249 -156068681 + L2 LINE L2 3207 3271 -1 2052 217 78 25 chrX 6531738 6532292 -156067638 - MLT1E LTR MaLR 0 593 11 1061 155 133 0 chrX 6532450 6532676 -156067254 - LTR47A LTR ERVL 0 452 197 358 74 19 0 chrX 6532732 6532786 -156067144 + Alu SINE Alu 247 301 -1 319 341 119 59 chrX 6532855 6533400 -156066530 + L1ME LINE L1 39 616 -5503 344 331 54 14 chrX 6533451 6533599 -156066331 - L1 LINE L1 -1788 4358 4205 1877 170 6 12 chrX 6533599 6533940 -156065990 + MER7A DNA MER2_type 1 337 -9 464 312 88 37 chrX 6533942 6534295 -156065635 - L1 LINE L1 -1951 4195 3825 320 330 62 16 chrX 6534312 6534506 -156065424 + L1ME LINE L1 3469 3671 -2458 832 196 91 5 chrX 6534514 6534713 -156065217 + L1MB8 LINE L1 5910 6125 -53 660 292 0 0 chrX 6534743 6534897 -156065033 - FRAM SINE Alu -24 152 1 250 200 0 31 chrX 6534899 6534964 -156064966 + L1MB8 LINE L1 6114 6176 -2 253 177 42 42 chrX 6534971 6535067 -156064863 + L1ME LINE L1 3686 3781 -2348 302 287 45 13 chrX 6535151 6535308 -156064622 + L1ME LINE L1 4439 4600 -1529 217 186 23 0 chrX 6535350 6535393 -156064537 + T-rich Low_complexity Low_complexity 5 48 0 468 286 42 75 chrX 6535507 6535815 -156064115 + L1ME LINE L1 5324 5621 -532 1794 179 81 20 chrX 6536101 6536508 -156063422 - MSTB1 LTR MaLR 0 432 1 296 365 55 20 chrX 6536825 6537025 -156062905 - L2 LINE L2 -266 3047 2841 397 177 23 15 chrX 6538999 6539129 -156060801 + GA-rich Low_complexity Low_complexity 2 132 0 256 237 40 0 chrX 6539137 6539213 -156060717 - MIR SINE MIR -59 203 125 308 256 75 8 chrX 6539768 6539901 -156060029 - LTR33 LTR ERVL -356 165 24 2225 190 29 45 chrX 6540996 6541506 -156058424 + MLT1D LTR MaLR 4 505 0 623 195 24 61 chrX 6541993 6542083 -156057847 - MER5A DNA MER1_type -11 178 95 2112 152 30 25 chrX 6542083 6542444 -156057486 + THE1B LTR MaLR 2 364 0 623 195 24 61 chrX 6542444 6542517 -156057413 - MER5A DNA MER1_type -94 95 21 1559 182 54 11 chrX 6543359 6543639 -156056291 - AluJo SINE Alu -20 292 1 2092 163 5 14 chrX 6544510 6544878 -156055052 + MLT1A1 LTR MaLR 1 365 0 378 0 0 0 chrX 6545540 6545582 -156054348 + (TA)n Simple_repeat Simple_repeat 1 42 0 24 32 0 0 chrX 6545693 6545724 -156054206 + AT_rich Low_complexity Low_complexity 1 31 0 904 180 90 122 chrX 6545912 6546289 -156053641 + MLT1A1 LTR MaLR 1 365 0 200 114 45 23 chrX 6546329 6546373 -156053557 + T-rich Low_complexity Low_complexity 2 46 0 4517 82 5 16 chrX 6546375 6547013 -156052917 - L1PB2 LINE L1 -2 6149 5519 226 290 179 12 chrX 6548357 6548519 -156051411 - L2 LINE L2 -12 3301 3113 426 316 124 0 chrX 6548590 6548799 -156051131 - LTR16C LTR ERVL -54 437 203 41 82 0 0 chrX 6549577 6549674 -156050256 + AT_rich Low_complexity Low_complexity 1 97 0 320 245 237 7 chrX 6549852 6549991 -156049939 + MIR SINE MIR 84 254 -8 249 289 12 0 chrX 6550954 6551037 -156048893 - L1ME LINE L1 -503 5659 5576 319 336 70 50 chrX 6551051 6551328 -156048602 - L1ME LINE L1 -758 5388 5197 480 60 12 24 chrX 6551328 6551411 -156048519 + (TAGA)n Simple_repeat Simple_repeat 4 85 0 319 336 70 50 chrX 6551411 6551672 -156048258 - L1ME LINE L1 -949 5197 4943 21 36 0 0 chrX 6551840 6551868 -156048062 + AT_rich Low_complexity Low_complexity 1 28 0 415 306 69 21 chrX 6551988 6552406 -156047524 - L1ME LINE L1 -1632 4514 4077 432 319 35 90 chrX 6552577 6553012 -156046918 + L2 LINE L2 1789 2199 -1115 298 316 49 31 chrX 6553013 6553238 -156046692 + L2 LINE L2 2530 2758 -556 245 296 69 84 chrX 6553334 6553537 -156046393 - L2 LINE L2 -243 3029 2830 257 226 107 0 chrX 6553711 6553795 -156046135 - MLT1F1 LTR MaLR 0 567 475 * 933 166 17 11 chrX 6553792 6553973 -156045957 - MLT1A1 LTR MaLR -179 186 5 1317 210 67 67 chrX 6553974 6554282 -156045648 + MER67D LTR ERV1 65 375 -139 1413 158 102 35 chrX 6554282 6554566 -156045364 - AluJo SINE Alu -9 303 1 1317 210 67 67 chrX 6554566 6554704 -156045226 + MER67D LTR ERV1 374 511 -3 342 0 0 0 chrX 6554761 6554799 -156045131 + (TG)n Simple_repeat Simple_repeat 2 39 0 342 286 10 0 chrX 6556076 6556174 -156043756 + MIR SINE MIR 34 132 -130 486 261 34 45 chrX 6556308 6556484 -156043446 + MIR SINE MIR 89 262 0 216 305 191 9 chrX 6557132 6557237 -156042693 - L2 LINE L2 -8 3264 3141 185 363 59 0 chrX 6557542 6557644 -156042286 + MIR SINE MIR 34 141 -121 207 69 0 0 chrX 6558225 6558254 -156041676 + (TG)n Simple_repeat Simple_repeat 2 30 0 1965 193 31 84 chrX 6559503 6560052 -156039878 + MLT2B1 LTR ERVL 1 520 0 226 318 37 19 chrX 6560064 6560171 -156039759 - MIR3 SINE MIR -28 180 72 2065 172 53 47 chrX 6560526 6560996 -156038934 + MLT1D LTR MaLR 31 503 -2 409 274 83 81 chrX 6561807 6561901 -156038029 + MLT1H LTR MaLR 35 127 -422 1853 166 157 18 chrX 6561901 6562341 -156037589 - MLT1D LTR MaLR 0 505 5 409 274 83 81 chrX 6562341 6562618 -156037312 + MLT1H LTR MaLR 127 407 -142 1714 162 67 63 chrX 6563822 6564040 -156035890 + MLT1C LTR MaLR 1 217 -250 2070 70 4 0 chrX 6564040 6564310 -156035620 + L1PA8A LINE L1 5860 6130 -1 1714 162 67 63 chrX 6564310 6564554 -156035376 + MLT1C LTR MaLR 217 465 -2 680 193 0 0 chrX 6564744 6564863 -156035067 - Tigger3(Golem) DNA MER2_type 0 3037 2919 255 309 0 0 chrX 6564869 6564950 -156034980 - Tigger3(Golem) DNA MER2_type -2948 81 1 728 207 67 0 chrX 6565428 6565592 -156034338 + MER58A DNA MER1_type 35 209 -15 461 286 8 16 chrX 6566754 6566880 -156033050 - L2 LINE L2 -2 3311 3187 482 190 98 15 chrX 6567334 6567479 -156032451 - MLT1G1 LTR MaLR -180 415 213 300 313 16 39 chrX 6567482 6567664 -156032266 + HAL1b LINE L1 541 718 -630 22 0 0 0 chrX 6567694 6567716 -156032214 + AT_rich Low_complexity Low_complexity 1 22 0 381 265 56 37 chrX 6567727 6568051 -156031879 + HAL1b LINE L1 832 1161 -187 781 168 6 52 chrX 6568069 6568242 -156031688 + MER47A DNA MER2_type 2 166 -200 911 196 29 6 chrX 6568257 6568430 -156031500 - FRAM SINE Alu 0 176 1 1010 143 10 54 chrX 6568444 6568647 -156031283 + MER47A DNA MER2_type 172 365 -1 257 291 60 8 chrX 6568657 6568791 -156031139 + HAL1b LINE L1 1204 1344 -4 291 205 84 0 chrX 6568826 6568909 -156031021 + MER58B DNA MER1_type 249 338 -3 367 318 117 7 chrX 6571156 6571310 -156028620 + MIR SINE MIR 8 178 -84 1597 300 94 31 chrX 6571464 6572290 -156027640 - L2 LINE L2 -1965 1349 472 458 262 81 27 chrX 6574547 6574696 -156025234 - MIR SINE MIR -78 184 28 255 31 0 0 chrX 6576430 6576462 -156023468 + (CA)n Simple_repeat Simple_repeat 2 33 0 335 296 138 33 chrX 6576508 6576660 -156023270 + L2 LINE L2 2863 3030 -283 215 296 42 28 chrX 6576659 6576730 -156023200 - L2 LINE L2 -836 2478 2407 * 473 250 29 15 chrX 6577038 6577174 -156022756 - Charlie8 DNA MER1_type -2240 177 40 207 196 22 0 chrX 6577497 6577543 -156022387 + (TG)n Simple_repeat Simple_repeat 1 47 0 1916 148 22 19 chrX 6577579 6577938 -156021992 - MLT1A1 LTR MaLR 0 365 6 186 43 0 0 chrX 6578202 6578225 -156021705 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 608 140 79 9 chrX 6578227 6578341 -156021589 - AluJo SINE Alu -30 282 161 * 717 161 9 0 chrX 6578340 6578452 -156021478 - AluJo SINE Alu -199 113 1 852 174 0 0 chrX 6579704 6579842 -156020088 + FLAM_C SINE Alu 1 138 -5 670 124 16 8 chrX 6579847 6579968 -156019962 + GA-rich Low_complexity Low_complexity 4 125 0 297 0 0 0 chrX 6580476 6580509 -156019421 + (CA)n Simple_repeat Simple_repeat 2 34 0 2334 81 0 19 chrX 6580523 6580832 -156019098 - AluSx SINE Alu -9 303 1 432 200 10 0 chrX 6581795 6581895 -156018035 - MER97c DNA MER1_type? -919 171 71 383 290 100 65 chrX 6584168 6584296 -156015634 - L1M4 LINE L1 -1308 5232 5110 1722 143 23 7 chrX 6584296 6584597 -156015333 - AluY SINE Alu -5 306 1 383 290 100 65 chrX 6584597 6584747 -156015183 - L1M4 LINE L1 -1430 5110 4944 408 297 103 20 chrX 6585310 6585681 -156014249 - L1MDa LINE L1 -3689 2851 2443 281 268 108 84 chrX 6586079 6586319 -156013611 - HAL1 LINE L1 -838 1669 1413 2839 102 21 37 chrX 6586319 6586752 -156013178 + MSTC LTR MaLR 3 428 0 281 268 108 84 chrX 6586752 6586937 -156012993 - HAL1 LINE L1 -1094 1413 1234 1110 160 19 9 chrX 6587415 6587575 -156012355 + MER20 DNA MER1_type 5 169 -50 207 0 0 0 chrX 6587575 6587598 -156012332 + (CA)n Simple_repeat Simple_repeat 1 23 0 1110 160 19 9 chrX 6587598 6587650 -156012280 + MER20 DNA MER1_type 169 219 0 2539 103 25 10 chrX 6588972 6589370 -156010560 + MLT2A1 LTR ERVL 1 404 -40 233 329 0 14 chrX 6589928 6590002 -156009928 + G-rich Low_complexity Low_complexity 1 72 0 512 273 145 54 chrX 6590156 6590316 -156009614 - MER50 LTR ERV1 -298 436 292 2102 106 0 0 chrX 6590316 6590600 -156009330 - AluY SINE Alu -7 304 21 512 273 145 54 chrX 6590600 6590831 -156009099 - MER50 LTR ERV1 -442 292 9 1414 214 105 21 chrX 6590907 6591374 -156008556 - MER84 LTR ERV1 0 507 2 301 111 28 139 chrX 6591374 6591446 -156008484 - MER84 LTR ERVI -433 74 11 * 1334 152 33 56 chrX 6591445 6591748 -156008182 - THE1C LTR MaLR -79 296 1 4859 110 12 8 chrX 6591748 6592494 -156007436 + L1PA15 LINE L1 5404 6152 -13 34 72 0 0 chrX 6592944 6593013 -156006917 + AT_rich Low_complexity Low_complexity 1 69 0 798 257 69 5 chrX 6593294 6593496 -156006434 + MIR SINE MIR 6 220 -42 2198 89 3 0 chrX 6593625 6593916 -156006014 - AluSp SINE Alu -13 300 9 2376 141 70 7 chrX 6594466 6594869 -156005061 + MSTA LTR MaLR 1 428 0 799 235 35 41 chrX 6595387 6595779 -156004151 - L1M3c LINE L1 -4729 1584 778 283 260 0 13 chrX 6595803 6595880 -156004050 - L1M3c LINE L1 -5117 1024 949 234 0 0 0 chrX 6595953 6595979 -156003951 + (TG)n Simple_repeat Simple_repeat 2 27 0 25 0 0 0 chrX 6596618 6596643 -156003287 + AT_rich Low_complexity Low_complexity 1 25 0 894 66 0 0 chrX 6597268 6597374 -156002556 - AluY SINE Alu -179 132 27 775 224 54 18 chrX 6597537 6597760 -156002170 + MER46C DNA MER2_type 107 337 -1 4246 213 76 31 chrX 6598104 6599332 -156000598 + L1MA7 LINE L1 3671 4953 -1193 1330 147 49 0 chrX 6599332 6599556 -156000374 + Tigger3(Golem) DNA MER2_type 2804 3038 0 479 180 0 0 chrX 6599563 6599652 -156000278 + L1MA7 LINE L1 5388 5476 -858 3453 165 28 18 chrX 6599659 6600373 -155999557 + L1MA7 LINE L1 5571 6291 0 261 0 0 0 chrX 6600597 6600626 -155999304 + (TTTA)n Simple_repeat Simple_repeat 4 32 0 5026 161 23 7 chrX 6600626 6602237 -155997693 - L1PA16 LINE L1 -12 6154 4531 334 332 82 71 chrX 6602383 6602859 -155997071 + L1M2 LINE L1 526 1006 -5843 286 61 41 0 chrX 6603014 6603063 -155996867 + (TA)n Simple_repeat Simple_repeat 1 51 0 189 0 0 0 chrX 6603062 6603083 -155996847 + (CA)n Simple_repeat Simple_repeat 2 22 0 * 399 55 0 0 chrX 6603083 6603138 -155996792 + MLT2A2 LTR ERVL 399 453 0 1925 156 31 6 chrX 6603443 6603769 -155996161 - MER2 DNA MER2_type 0 345 12 507 199 6 21 chrX 6603919 6604084 -155995846 + MER58A DNA MER1_type 2 213 -11 333 298 7 0 chrX 6604642 6604783 -155995147 - L1MDa LINE L1 -3212 2917 2776 352 245 151 28 chrX 6605179 6605391 -155994539 - L1MDa LINE L1 -3978 2151 1914 28 0 0 0 chrX 6605479 6605507 -155994423 + AT_rich Low_complexity Low_complexity 1 28 0 234 297 77 19 chrX 6605756 6605911 -155994019 - L1MDa LINE L1 -4708 1421 1258 309 228 24 138 chrX 6605986 6606153 -155993777 - L1MDa LINE L1 -4918 1201 1054 246 285 63 65 chrX 6606776 6607110 -155992820 + HAL1b LINE L1 346 677 -671 343 334 126 26 chrX 6607278 6607368 -155992562 + L2 LINE L2 2124 2204 -1110 2893 143 5 20 chrX 6607368 6607809 -155992121 - Tigger2a DNA MER2_type 0 434 1 343 334 126 26 chrX 6607809 6608059 -155991871 + L2 LINE L2 2204 2498 -816 259 291 0 23 chrX 6608093 6608179 -155991751 - L2 LINE L2 -1529 1785 1702 1032 198 20 0 chrX 6608210 6608407 -155991523 - AluJo SINE Alu -2 310 110 258 32 0 0 chrX 6609376 6609407 -155990523 + (TTG)n Simple_repeat Simple_repeat 2 32 0 523 168 75 65 chrX 6609411 6609518 -155990412 - AluJo SINE Alu -188 124 17 180 111 0 0 chrX 6609659 6609686 -155990244 + (TC)n Simple_repeat Simple_repeat 2 28 0 22 0 0 0 chrX 6609686 6609708 -155990222 + AT_rich Low_complexity Low_complexity 1 22 0 2988 103 15 5 chrX 6610722 6611130 -155988800 - L1PB1 LINE L1 -1 6150 5739 552 45 0 0 chrX 6611130 6611196 -155988734 + L1P5 LINE L1 5623 5688 -463 256 114 0 0 chrX 6611196 6611240 -155988690 + Alu SINE Alu 257 300 0 541 151 8 14 chrX 6611240 6611343 -155988587 + L1P5 LINE L1 5676 5749 -402 2005 115 0 67 chrX 6611519 6611711 -155988219 - AluSc SINE Alu -1 308 146 2379 98 0 3 chrX 6611711 6612018 -155987912 - AluSg SINE Alu -4 306 1 2005 115 0 67 chrX 6612018 6612155 -155987775 - AluSc SINE Alu -163 146 1 23232 113 139 60 chrX 6614089 6619770 -155980160 - L1PA7 LINE L1 0 6154 12 1661 107 133 125 chrX 6620369 6620744 -155979186 - MER83B LTR ERV1 0 378 1 1547 181 88 9 chrX 6621742 6622078 -155977852 - MLT1A1 LTR MaLR -2 455 1 235 341 44 7 chrX 6623018 6623153 -155976777 + LTR16B LTR ERVL 167 306 -158 1303 206 0 0 chrX 6625201 6625434 -155974496 + AluJo SINE Alu 1 233 -79 716 212 206 21 chrX 6625438 6625627 -155974303 - MER58A DNA MER1_type 0 224 1 801 245 72 78 chrX 6626535 6626645 -155973285 - L1ME1 LINE L1 -20 6146 6037 1820 163 3 10 chrX 6626645 6626940 -155972990 - AluJb SINE Alu -19 293 1 801 245 72 78 chrX 6626940 6627164 -155972766 - L1ME1 LINE L1 -129 6037 5855 259 210 16 0 chrX 6627164 6627226 -155972704 + LTR66 LTR ERVL 377 439 -171 249 294 0 24 chrX 6627226 6627311 -155972619 - L1MC4 LINE L1 -1345 6697 6615 270 0 0 0 chrX 6627311 6627341 -155972589 + (TAGA)n Simple_repeat Simple_repeat 3 32 0 1814 152 3 10 chrX 6627341 6627631 -155972299 - AluJo SINE Alu -24 288 1 1010 247 34 8 chrX 6627632 6627899 -155972031 - L1MD2 LINE L1 -515 5844 5571 224 326 97 14 chrX 6627969 6628113 -155971817 + MIR SINE MIR 64 219 -43 784 230 32 0 chrX 6628125 6628312 -155971618 + MER20B DNA MER1_type 2 194 -25 22 35 0 0 chrX 6628507 6628536 -155971394 + AT_rich Low_complexity Low_complexity 1 29 0 750 200 11 18 chrX 6629357 6629541 -155970389 - L1MB8 LINE L1 -1 6177 5984 254 253 162 0 chrX 6629680 6629834 -155970096 + MER96B DNA MER1_type? 1 179 -238 2176 103 0 0 chrX 6629916 6630224 -155969706 + AluSx SINE Alu 1 308 0 571 207 8 8 chrX 6630261 6630382 -155969548 + MER96B DNA MER1_type? 297 417 0 2191 144 14 11 chrX 6630867 6631228 -155968702 + L1MA8 LINE L1 5926 6287 -4 30 45 0 0 chrX 6632062 6632106 -155967824 + AT_rich Low_complexity Low_complexity 1 44 0 256 275 44 0 chrX 6632115 6632206 -155967724 + LTR33 LTR ERVL 27 121 -400 32 26 0 0 chrX 6632582 6632621 -155967309 + AT_rich Low_complexity Low_complexity 1 39 0 605 158 75 0 chrX 6632656 6632789 -155967141 - L1MB4 LINE L1 0 6180 6038 2939 188 33 5 chrX 6632816 6633385 -155966545 - L1MB3 LINE L1 -9 6174 5590 419 258 37 43 chrX 6634628 6634791 -155965139 - MER5A DNA MER1_type 0 189 28 1658 234 83 45 chrX 6634794 6635277 -155964653 - MLT1D LTR MaLR -3 502 2 235 238 24 24 chrX 6635516 6635642 -155964288 + (CCGCG)n Simple_repeat Simple_repeat 1 126 0 46 62 0 0 chrX 6635648 6635729 -155964201 + GC_rich Low_complexity Low_complexity 1 81 0 1738 162 14 17 chrX 6636022 6636319 -155963611 - AluJo SINE Alu -16 296 1 780 153 51 0 chrX 6636320 6636438 -155963492 - AluJo/FLAM SINE Alu -186 126 3 210 71 0 0 chrX 6637282 6637310 -155962620 + (TTTTTA)n Simple_repeat Simple_repeat 3 30 0 287 248 28 55 chrX 6637532 6637641 -155962289 - MIR SINE MIR -64 144 39 240 35 0 0 chrX 6638180 6638209 -155961721 + (TTG)n Simple_repeat Simple_repeat 2 30 0 805 169 0 8 chrX 6638213 6638337 -155961593 - FLAM_C SINE Alu -19 124 2 218 307 59 10 chrX 6640934 6641035 -155958895 - L2 LINE L2 0 3313 3208 460 322 50 32 chrX 6641162 6641445 -155958485 - L2 LINE L2 -339 2975 2688 2270 204 8 6 chrX 6641445 6641920 -155958010 + L1MD3 LINE L1 7398 7873 -122 509 114 190 0 chrX 6641923 6642048 -155957882 - MSTD LTR MaLR -8 383 199 1317 203 117 34 chrX 6642062 6642480 -155957450 + MER92B LTR ERV1 184 636 0 232 150 50 0 chrX 6643294 6643354 -155956576 + (CATATA)n Simple_repeat Simple_repeat 3 65 0 785 211 23 6 chrX 6643415 6643586 -155956344 - MER92B LTR ERV1 -462 174 1 2317 173 22 10 chrX 6644095 6644512 -155955418 + L1PB4 LINE L1 5620 6041 -115 * 9180 178 8 4 chrX 6644511 6646200 -155953730 + L1P LINE L1 3707 5403 -743 2000 143 102 6 chrX 6646205 6646547 -155953383 - THE1C LTR MaLR 0 375 1 9410 117 74 17 chrX 6646547 6648040 -155951890 - THE1C-int LTR MaLR 0 1580 4 921 208 25 72 chrX 6648040 6648276 -155951654 - MER50 LTR ERV1 0 734 510 3049 235 14 8 chrX 6648508 6648870 -155951060 - L1 LINE L1 -1619 5229 4870 565 91 13 0 chrX 6648870 6648947 -155950983 - MADE1 DNA Mariner -2 78 1 3049 235 14 8 chrX 6648947 6649321 -155950609 - L1 LINE L1 -1978 4870 4489 2212 143 68 0 chrX 6650312 6650677 -155949253 - MLT1B LTR MaLR 0 390 1 333 280 159 34 chrX 6650971 6651210 -155948720 - L1 LINE L1 -5484 1365 1097 324 59 137 0 chrX 6651393 6651546 -155948384 + (TA)n Simple_repeat Simple_repeat 2 175 0 281 67 0 22 chrX 6653101 6653146 -155946784 + (CTG)n Simple_repeat Simple_repeat 2 45 0 313 202 81 30 chrX 6653872 6654024 -155945906 + MER4C-int LTR ERV1 1295 3316 -3015 8696 192 45 56 chrX 6654025 6655919 -155944011 + MER4C-int LTR ERV1 2041 3955 -2777 2406 84 0 3 chrX 6655919 6656215 -155943715 + AluSg SINE Alu 1 295 -15 8696 192 45 56 chrX 6656215 6656771 -155943159 + MER4C-int LTR ERV1 3955 6006 -726 422 36 18 0 chrX 6656797 6656853 -155943077 + (TAGA)n Simple_repeat Simple_repeat 4 60 0 710 222 7 0 chrX 6656874 6657018 -155942912 + MER4C-int LTR ERV1 5852 5996 -335 410 240 37 141 chrX 6657106 6657348 -155942582 + MER4C-int LTR ERV1 6368 6584 -14 835 224 41 129 chrX 6657364 6657874 -155942056 + MER4C LTR ERV1 1 465 0 1826 235 75 27 chrX 6657874 6658722 -155941208 + L1MCb LINE L1 815 1700 -4856 297 376 12 18 chrX 6658806 6658976 -155940954 - L1PBb LINE L1 -5641 1944 1776 230 306 84 58 chrX 6659227 6659488 -155940442 - L1PBb LINE L1 -5782 1803 1536 370 370 52 35 chrX 6659560 6659733 -155940197 - L1PBb LINE L1 -6018 1567 1392 849 277 36 27 chrX 6660079 6660490 -155939440 - L1PBb LINE L1 -7166 415 1 615 236 0 0 chrX 6661367 6661477 -155938453 + FLAM_A SINE Alu 1 110 -32 2253 117 0 0 chrX 6661538 6661847 -155938083 - AluY SINE Alu -2 309 1 194 225 0 0 chrX 6661994 6662034 -155937896 + L2 LINE L2 3269 3308 -5 1711 255 38 36 chrX 6662265 6662822 -155937108 + MER74A LTR ERVL 1 558 0 933 199 6 17 chrX 6663189 6663370 -155936560 - MER5A DNA MER1_type -1 188 10 3349 206 73 9 chrX 6664571 6665743 -155934187 + L1MA9 LINE L1 4540 5855 -457 207 0 0 0 chrX 6665743 6665766 -155934164 + (CA)n Simple_repeat Simple_repeat 2 24 0 3349 206 73 9 chrX 6665766 6666256 -155933674 + L1MA9 LINE L1 5855 6312 0 258 304 36 18 chrX 6666720 6666832 -155933098 + MLT1H1 LTR MaLR 109 222 -333 1934 130 0 7 chrX 6667476 6667791 -155932139 + AluSx SINE Alu 3 315 0 22 70 0 0 chrX 6667894 6667937 -155931993 + AT_rich Low_complexity Low_complexity 1 43 0 28 48 0 0 chrX 6668414 6668456 -155931474 + AT_rich Low_complexity Low_complexity 1 42 0 406 300 175 21 chrX 6668818 6669098 -155930832 + L1MB2 LINE L1 103 425 -5855 1041 232 42 110 chrX 6669631 6670489 -155929441 + L1MB2 LINE L1 777 1656 -4657 22 35 0 0 chrX 6670624 6670653 -155929277 + AT_rich Low_complexity Low_complexity 1 29 0 2291 90 3 3 chrX 6670747 6671047 -155928883 + AluY SINE Alu 1 300 -11 216 0 0 0 chrX 6671137 6671161 -155928769 + (T)n Simple_repeat Simple_repeat 1 24 0 668 155 16 39 chrX 6671173 6671302 -155928628 + FLAM_C SINE Alu 2 127 -16 200 206 32 16 chrX 6671516 6671579 -155928351 + (TA)n Simple_repeat Simple_repeat 2 65 0 38 39 0 0 chrX 6672421 6672473 -155927457 + AT_rich Low_complexity Low_complexity 1 52 0 1264 172 5 0 chrX 6672595 6672804 -155927126 + AluJb SINE Alu 95 304 -8 1277 155 5 14 chrX 6672834 6673041 -155926889 + AluJo SINE Alu 1 205 -107 751 176 0 0 chrX 6673321 6673440 -155926490 - FLAM_C SINE Alu -20 123 5 985 273 24 60 chrX 6673493 6673959 -155925971 + MLT1D LTR MaLR 3 451 -54 1820 159 24 11 chrX 6673989 6674361 -155925569 - L1MA8 LINE L1 -6 6285 5909 671 227 0 0 chrX 6674362 6674490 -155925440 + FLAM_C SINE Alu 2 129 -4 360 0 0 0 chrX 6674491 6674531 -155925399 + (TG)n Simple_repeat Simple_repeat 2 41 0 475 117 61 6 chrX 6674534 6674697 -155925233 + (TTATA)n Simple_repeat Simple_repeat 5 176 0 1550 216 37 117 chrX 6675180 6676149 -155923781 - L1M4c LINE L1 -4767 1617 777 1252 244 49 16 chrX 6676142 6676720 -155923210 + L1MB2 LINE L1 1924 2520 -3862 * 1186 242 16 22 chrX 6676712 6677076 -155922854 + L1MB2 LINE L1 4930 5291 -1091 * 892 202 98 7 chrX 6677072 6677363 -155922567 + L1MB2 LINE L1 6097 6373 -34 * 1281 242 60 23 chrX 6679686 6680037 -155919893 - MLT1A1 LTR MaLR -1 364 1 1550 179 50 0 chrX 6680098 6680377 -155919553 - MER1A DNA MER1_type -234 295 3 379 288 100 18 chrX 6680382 6680611 -155919319 - MER46C DNA MER2_type -90 248 1 25 31 0 0 chrX 6680673 6680705 -155919225 + AT_rich Low_complexity Low_complexity 1 32 0 29 0 0 0 chrX 6680734 6680763 -155919167 + AT_rich Low_complexity Low_complexity 1 29 0 318 89 0 0 chrX 6680763 6680808 -155919122 - AluSg/x SINE Alu -168 132 88 247 363 0 17 chrX 6680922 6681101 -155918829 + C-rich Low_complexity Low_complexity 2 177 0 * 252 272 20 54 chrX 6680969 6681116 -155918814 + (CCCCG)n Simple_repeat Simple_repeat 1 142 0 294 156 0 0 chrX 6681165 6681229 -155918701 + C-rich Low_complexity Low_complexity 1 64 0 295 236 11 34 chrX 6681294 6681383 -155918547 + C-rich Low_complexity Low_complexity 3 89 0 333 98 92 7 chrX 6681613 6681766 -155918164 + (TA)n Simple_repeat Simple_repeat 1 166 0 379 142 68 0 chrX 6681819 6681981 -155917949 + (TTATA)n Simple_repeat Simple_repeat 2 174 0 304 136 64 0 chrX 6681996 6682121 -155917809 + (TTATA)n Simple_repeat Simple_repeat 2 134 0 451 125 65 0 chrX 6682136 6682304 -155917626 + (TTATA)n Simple_repeat Simple_repeat 1 179 0 799 201 26 0 chrX 6682317 6682471 -155917459 + FRAM SINE Alu 1 152 -24 2227 121 0 0 chrX 6683700 6684006 -155915924 - AluSx SINE Alu -5 307 2 183 353 128 32 chrX 6685572 6685821 -155914109 - L2 LINE L2 -649 2665 2393 924 68 53 0 chrX 6686475 6686607 -155913323 - MER85 DNA T2_type 0 139 1 657 265 10 15 chrX 6687335 6687539 -155912391 + L2 LINE L2 648 850 -2464 355 266 53 111 chrX 6687593 6687819 -155912111 - MIR SINE MIR -49 213 1 497 306 174 29 chrX 6687820 6688205 -155911725 + L2 LINE L2 850 1290 -2024 231 114 0 0 chrX 6688338 6688373 -155911557 + (TTC)n Simple_repeat Simple_repeat 2 36 0 1403 134 5 0 chrX 6690588 6690812 -155909118 + L1PA15 LINE L1 5936 6160 -5 413 272 164 76 chrX 6692261 6692883 -155907047 + L1M2 LINE L1 527 1203 -5646 941 113 0 0 chrX 6692950 6693091 -155906839 + AluSp/q SINE Alu 173 313 0 1906 109 40 0 chrX 6693540 6693688 -155906242 - AluSx SINE Alu -25 287 146 420 71 0 0 chrX 6693688 6693744 -155906186 + (TTG)n Simple_repeat Simple_repeat 1 56 0 1906 109 40 0 chrX 6693744 6693871 -155906059 - AluSx SINE Alu -166 146 1 2421 28 0 0 chrX 6694886 6695172 -155904758 + L1PA4 LINE L1 5867 6152 -3 198 0 0 0 chrX 6695258 6695280 -155904650 + (TG)n Simple_repeat Simple_repeat 1 22 0 2323 90 3 0 chrX 6695283 6695583 -155904347 - AluSq SINE Alu -12 301 1 187 302 16 0 chrX 6695924 6695987 -155903943 - L3b LINE CR1 -351 1232 1169 25 51 0 0 chrX 6696329 6696368 -155903562 + AT_rich Low_complexity Low_complexity 1 39 0 2200 116 137 11 chrX 6696468 6696848 -155903082 - MSTA LTR MaLR 0 428 1 299 308 93 6 chrX 6697863 6698035 -155901895 - MARNA DNA Mariner -108 478 292 223 318 30 23 chrX 6698054 6698186 -155901744 + (CATG)n Simple_repeat Simple_repeat 1 133 0 2080 199 28 37 chrX 6698442 6698950 -155900980 - MLT1D LTR MaLR -2 503 1 1243 229 75 5 chrX 6699591 6699975 -155899955 - L1M4 LINE L1 -976 5170 4760 798 276 89 13 chrX 6700066 6700526 -155899404 - MER20B DNA MER1_type -80 703 209 2973 70 0 12 chrX 6701660 6702074 -155897856 - L1PA8A LINE L1 -4 6127 5719 1913 129 0 3 chrX 6702077 6702402 -155897528 + L1P LINE L1 4600 4923 -1223 1895 65 0 8 chrX 6702471 6702716 -155897214 - L1PA5 LINE L1 -4 6150 5908 1054 88 0 0 chrX 6702816 6702953 -155896977 + AluSg/x SINE Alu 171 307 -5 740 226 91 68 chrX 6702953 6703262 -155896668 + MLT1C LTR MaLR 88 403 -64 214 370 14 0 chrX 6703315 6703388 -155896542 + L2 LINE L2 2567 2640 -674 231 36 0 0 chrX 6703430 6703458 -155896472 + (TC)n Simple_repeat Simple_repeat 1 28 0 410 317 72 0 chrX 6703853 6704020 -155895910 - MIR SINE MIR -3 259 81 24 0 0 0 chrX 6704024 6704048 -155895882 + AT_rich Low_complexity Low_complexity 1 24 0 6469 135 10 3 chrX 6704050 6705425 -155894505 - L1MA2 LINE L1 0 6304 4922 22 70 0 0 chrX 6705730 6705773 -155894157 + AT_rich Low_complexity Low_complexity 1 43 0 215 137 55 0 chrX 6705776 6705849 -155894081 + (TA)n Simple_repeat Simple_repeat 1 77 0 22 0 0 0 chrX 6706060 6706082 -155893848 + AT_rich Low_complexity Low_complexity 1 22 0 394 222 28 6 chrX 6706131 6706483 -155893447 + (TA)n Simple_repeat Simple_repeat 1 360 0 344 290 107 76 chrX 6708495 6708560 -155891370 - MIR SINE MIR -31 231 169 1353 268 76 16 chrX 6708560 6709046 -155890884 - MLT2B2 LTR ERVL 0 515 1 344 290 107 76 chrX 6709046 6709204 -155890726 - MIR SINE MIR -93 169 1 826 232 30 15 chrX 6710192 6710436 -155889494 + L1 LINE L1 5024 5274 -872 298 0 23 23 chrX 6710436 6710479 -155889451 + (TA)n Simple_repeat Simple_repeat 1 43 0 826 232 30 15 chrX 6710479 6710497 -155889433 + L1 LINE L1 5274 5290 -856 234 0 0 0 chrX 6710501 6710527 -155889403 + (CAT)n Simple_repeat Simple_repeat 1 26 0 334 309 61 44 chrX 6712017 6712677 -155887253 + L1M4 LINE L1 2248 2918 -3228 363 23 0 0 chrX 6712850 6712894 -155887036 + (TG)n Simple_repeat Simple_repeat 1 44 0 264 253 13 0 chrX 6712952 6713031 -155886899 + L1MC5 LINE L1 7809 7888 -73 411 321 91 49 chrX 6713173 6713578 -155886352 - L1MC4a LINE L1 -1866 5942 5521 3911 89 2 34 chrX 6714019 6714615 -155885315 + L1PB1 LINE L1 5575 6151 0 186 358 220 0 chrX 6715333 6715506 -155884424 - MIR SINE MIR -21 241 31 284 157 84 36 chrX 6715605 6715688 -155884242 - L1MB3 LINE L1 -1 6182 6096 2819 128 49 16 chrX 6715788 6716121 -155883809 + L1MB1 LINE L1 5158 5525 -809 2102 121 0 0 chrX 6716121 6716435 -155883495 + AluSx SINE Alu 1 314 0 2819 128 49 16 chrX 6716435 6716706 -155883224 + L1MB1 LINE L1 5525 5786 -548 846 125 0 0 chrX 6716710 6716830 -155883100 - AluSg/x SINE Alu -41 271 152 1507 180 23 0 chrX 6716830 6717130 -155882800 + L1MB1 LINE L1 5789 6095 -73 1861 163 0 23 chrX 6717547 6717854 -155882076 - AluJb SINE Alu -12 300 1 351 206 62 10 chrX 6717863 6717960 -155881970 + MER5C DNA MER1_type 212 313 -11 24 0 0 0 chrX 6718250 6718274 -155881656 + AT_rich Low_complexity Low_complexity 1 24 0 3080 129 20 8 chrX 6718274 6718785 -155881145 - L1PB4 LINE L1 -8 6148 5632 2157 126 3 28 chrX 6719046 6719364 -155880566 - AluJb SINE Alu -2 310 1 1099 179 1 15 chrX 6719652 6719865 -155880065 + MLT1E LTR MaLR 380 545 -4 2204 140 22 36 chrX 6723774 6724187 -155875743 + Tigger2a DNA MER2_type 2 408 -26 234 0 0 0 chrX 6724589 6724615 -155875315 + (A)n Simple_repeat Simple_repeat 1 26 0 216 152 22 43 chrX 6724963 6725009 -155874921 + CT-rich Low_complexity Low_complexity 1 45 0 312 302 8 8 chrX 6725223 6725349 -155874581 + (TA)n Simple_repeat Simple_repeat 2 127 0 966 253 101 22 chrX 6725551 6725867 -155874063 + MLT1E LTR MaLR 15 355 -238 507 222 0 0 chrX 6727409 6727526 -155872404 + (TA)n Simple_repeat Simple_repeat 1 117 0 315 269 0 43 chrX 6727531 6727624 -155872306 - L1MC4 LINE L1 -1339 6703 6615 426 176 0 0 chrX 6727633 6727718 -155872212 + (TA)n Simple_repeat Simple_repeat 2 86 0 1060 144 26 0 chrX 6728005 6728200 -155871730 - L1MB7 LINE L1 -241 5943 5744 306 231 0 0 chrX 6728255 6728346 -155871584 + (TG)n Simple_repeat Simple_repeat 2 92 0 625 236 66 33 chrX 6728595 6728807 -155871123 + MER20 DNA MER1_type 1 219 0 3051 22 0 0 chrX 6731032 6731397 -155868533 - L1P2 LINE L1 -383 5771 5407 862 233 57 28 chrX 6732044 6732396 -155867534 + L1M4 LINE L1 2640 3001 -3145 1690 154 79 25 chrX 6733050 6733091 -155866839 - THE1C LTR MaLR 0 375 338 2035 116 0 0 chrX 6733091 6733368 -155866562 + AluSx SINE Alu 1 277 -35 1690 154 79 25 chrX 6733368 6733682 -155866248 - THE1C LTR MaLR -37 338 1 2193 107 7 0 chrX 6734265 6734555 -155865375 - AluSq SINE Alu -20 293 2 422 272 53 0 chrX 6735256 6735370 -155864560 - L2 LINE L2 -1 3312 3193 942 361 102 23 chrX 6736042 6737281 -155862649 + L2 LINE L2 1726 3062 -210 369 198 117 0 chrX 6737567 6737678 -155862252 + L1ME3A LINE L1 5458 5581 -585 775 225 120 8 chrX 6737780 6738038 -155861892 + L1ME3A LINE L1 5876 6162 -8 617 249 107 0 chrX 6738045 6738270 -155861660 - L1ME3A LINE L1 -54 6116 5868 225 235 0 0 chrX 6738281 6738332 -155861598 - L2 LINE L2 -962 2352 2302 434 272 44 9 chrX 6738505 6738619 -155861311 + L2 LINE L2 3186 3303 -10 456 265 27 7 chrX 6739153 6739300 -155860630 + MER45R DNA AcHobo 418 567 -1014 557 243 7 0 chrX 6739310 6739454 -155860476 - Tigger6a DNA MER2_type -542 541 397 324 115 0 9 chrX 6740332 6740396 -155859534 + Alu SINE Alu 1 46 -256 1047 196 33 9 chrX 6740600 6740814 -155859116 - MER20 DNA MER1_type 0 219 1 2267 110 0 16 chrX 6741144 6741453 -155858477 - AluSx SINE Alu -8 304 1 476 258 204 15 chrX 6742280 6742544 -155857386 + MLT1K LTR MaLR 256 569 -19 201 39 0 0 chrX 6743724 6743750 -155856180 + (TTG)n Simple_repeat Simple_repeat 2 27 0 21 36 0 0 chrX 6744467 6744495 -155855435 + AT_rich Low_complexity Low_complexity 1 28 0 471 165 0 11 chrX 6745210 6745301 -155854629 + L1 LINE L1 4894 4983 -1163 2082 115 7 3 chrX 6745697 6745984 -155853946 - AluSx SINE Alu -24 288 1 271 337 11 80 chrX 6746204 6746391 -155853539 + L2 LINE L2 2992 3165 -107 481 266 22 43 chrX 6746407 6746546 -155853384 + MIR SINE MIR 2 137 -125 1499 211 14 6 chrX 6746936 6747297 -155852633 + L1MB8 LINE L1 5813 6176 -2 1619 98 10 0 chrX 6747309 6747513 -155852417 + AluSq SINE Alu 1 206 -107 337 119 0 0 chrX 6747514 6747573 -155852357 + AluSq SINE Alu 243 301 0 23 0 0 0 chrX 6747717 6747740 -155852190 + AT_rich Low_complexity Low_complexity 1 23 0 2137 162 11 11 chrX 6747745 6748110 -155851820 + MLT1A1 LTR MaLR 1 365 0 204 277 221 34 chrX 6748204 6748418 -155851512 + L2 LINE L2 1985 2248 -1066 333 0 0 0 chrX 6748418 6748455 -155851475 + (CA)n Simple_repeat Simple_repeat 2 38 0 204 277 221 34 chrX 6748455 6748475 -155851455 + L2 LINE L2 2248 2263 -1051 352 379 53 46 chrX 6748658 6749348 -155850582 + L2 LINE L2 2543 3272 0 26 30 0 0 chrX 6749887 6749920 -155850010 + AT_rich Low_complexity Low_complexity 1 33 0 2036 101 10 24 chrX 6751441 6751738 -155848192 - AluSq SINE Alu -16 297 5 1824 165 0 4 chrX 6751969 6752248 -155847682 + AluJb SINE Alu 1 278 -34 982 114 6 6 chrX 6752251 6752417 -155847513 + (GAAA)n Simple_repeat Simple_repeat 3 168 0 750 288 10 0 chrX 6753210 6753415 -155846515 - MLT1E3 LTR MaLR 0 624 418 358 203 75 60 chrX 6753516 6753601 -155846329 - MLT1E1 LTR MaLR -354 300 211 2692 154 7 0 chrX 6753601 6754024 -155845906 + MSTC LTR MaLR 3 428 0 358 203 75 60 chrX 6754024 6754071 -155845859 - MLT1E1 LTR MaLR -443 211 166 * 625 230 0 0 chrX 6754057 6754183 -155845747 - MLT1E1 LTR MaLR -521 133 8 232 130 56 0 chrX 6754448 6754502 -155845428 + GA-rich Low_complexity Low_complexity 3 59 0 3426 130 5 0 chrX 6754531 6755144 -155844786 + L1PA16 LINE L1 5431 6160 -6 237 255 62 125 chrX 6755184 6755392 -155844538 - L2 LINE L2 0 3313 3119 426 221 215 0 chrX 6755976 6756134 -155843796 + L1MC2 LINE L1 6140 6331 -13 261 124 93 0 chrX 6756394 6756523 -155843407 + (TAGA)n Simple_repeat Simple_repeat 1 141 0 3544 65 9 0 chrX 6756568 6757028 -155842902 - L1PA13 LINE L1 -4 6159 5696 253 275 81 47 chrX 6757077 6757335 -155842595 - L1M4 LINE L1 -1353 4793 4527 2401 60 0 0 chrX 6757385 6757700 -155842230 - AluY SINE Alu 0 315 1 1163 226 141 19 chrX 6757729 6758203 -155841727 - L1ME1 LINE L1 -18 6148 5617 388 289 58 5 chrX 6758229 6758437 -155841493 - L1M4 LINE L1 -1693 4453 4235 402 314 114 68 chrX 6759476 6759887 -155840043 - L1MEd LINE L1 -5674 445 16 639 124 0 0 chrX 6760751 6760840 -155839090 - AluSg/x SINE Alu -18 292 204 932 241 169 16 chrX 6761824 6762131 -155837799 - MLT1E LTR MaLR 0 593 240 297 250 0 0 chrX 6762331 6762395 -155837535 - HsTC2 DNA Tc2 -1798 100 37 860 143 0 7 chrX 6762451 6762591 -155837339 - L1MB8 LINE L1 -18 6160 6022 219 150 0 0 chrX 6762591 6762631 -155837299 + (TTTTTA)n Simple_repeat Simple_repeat 3 42 0 228 156 0 0 chrX 6762638 6762670 -155837260 - 5S rRNA rRNA 0 121 90 549 15 0 0 chrX 6763071 6763136 -155836794 + L1PA4 LINE L1 6091 6155 0 2416 144 45 13 chrX 6763165 6763562 -155836368 + MSTB LTR MaLR 1 410 -16 339 291 100 0 chrX 6763845 6763955 -155835975 - MER103 DNA DNA -44 122 2 354 271 26 46 chrX 6764053 6764204 -155835726 - L3 LINE CR1 -627 950 803 1299 241 78 74 chrX 6765077 6765617 -155834313 + MLT1E LTR MaLR 52 593 0 265 321 9 36 chrX 6766997 6767109 -155832821 - MIR3 SINE MIR -8 200 92 6108 139 30 10 chrX 6767473 6769049 -155830881 + L1MA5A LINE L1 4685 6292 -5 420 309 62 14 chrX 6769231 6769441 -155830489 - MIR SINE MIR -12 250 31 1949 120 54 37 chrX 6769570 6769921 -155830009 - THE1C LTR MaLR -18 357 1 589 288 0 0 chrX 6770181 6770313 -155829617 + MER58A DNA MER1_type 1 132 0 302 318 11 0 chrX 6771117 6771205 -155828725 - MER63A DNA MER1_type -27 183 95 237 251 106 97 chrX 6771219 6771446 -155828484 + HAL1 LINE L1 2279 2507 0 453 322 52 14 chrX 6771458 6771669 -155828261 + MIR SINE MIR 34 252 -10 248 180 66 0 chrX 6772814 6772875 -155827055 + (TATATG)n Simple_repeat Simple_repeat 6 70 0 399 291 20 92 chrX 6772993 6773340 -155826590 - L2 LINE L2 -1 3312 2991 1859 253 132 11 chrX 6773413 6773942 -155825988 - MLT1E LTR MaLR 0 593 1 254 188 0 0 chrX 6773948 6773996 -155825934 - L2 LINE L2 -498 2816 2769 445 115 16 0 chrX 6775747 6775808 -155824122 - AluS SINE Alu -250 63 2 25 0 0 0 chrX 6776294 6776319 -155823611 + AT_rich Low_complexity Low_complexity 1 25 0 392 302 0 0 chrX 6776730 6776836 -155823094 - MER5A DNA MER1_type -80 109 4 258 81 0 0 chrX 6777506 6777543 -155822387 + (TGAA)n Simple_repeat Simple_repeat 3 39 0 1580 177 38 13 chrX 6777599 6777915 -155822015 - MER33 DNA MER1_type 0 324 1 222 313 30 0 chrX 6777961 6778028 -155821902 + MIR3 SINE MIR 86 154 -54 217 369 0 0 chrX 6778689 6778754 -155821176 + L2 LINE L2 3207 3271 -1 1297 35 0 12 chrX 6779123 6779292 -155820638 + (GAA)n Simple_repeat Simple_repeat 1 167 0 321 68 0 0 chrX 6779292 6779336 -155820594 + (GA)n Simple_repeat Simple_repeat 1 44 0 1955 164 0 6 chrX 6779930 6780242 -155819688 + AluJo SINE Alu 1 310 -2 279 274 9 101 chrX 6780396 6780578 -155819352 - L2 LINE L2 -4 3309 3149 2379 219 41 2 chrX 6780578 6781062 -155818868 - MLT1D LTR MaLR 0 505 3 279 274 9 101 chrX 6781062 6781098 -155818832 - L2 LINE L2 -164 3149 3111 559 229 84 0 chrX 6781327 6781458 -155818472 + Tigger3(Golem) DNA MER2_type 1 142 -2887 * 1385 176 24 0 chrX 6781456 6781706 -155818224 + Tigger3(Golem) DNA MER2_type 2772 3027 -2 248 227 0 0 chrX 6781884 6781928 -155818002 - MER2 DNA MER2_type -20 325 282 * 621 326 6 0 chrX 6781903 6782081 -155817849 - MER8 DNA MER2_type -60 179 1 1350 157 0 9 chrX 6782477 6782694 -155817236 + L1PA15 LINE L1 5949 6163 -2 2228 106 0 26 chrX 6783669 6783980 -155815950 - AluSx SINE Alu -9 303 1 2378 97 3 6 chrX 6784653 6784964 -155814966 - AluSx SINE Alu 0 312 3 459 0 0 0 chrX 6785919 6785970 -155813960 + (GA)n Simple_repeat Simple_repeat 1 51 0 11512 71 13 0 chrX 6786352 6787771 -155812159 - HERVL LTR ERVL -1400 4254 2818 1833 109 158 21 chrX 6787788 6788118 -155811812 - THE1C LTR MaLR 0 375 1 319 235 12 12 chrX 6788118 6788199 -155811731 + Charlie8 DNA MER1_type 341 421 -1996 229 273 0 30 chrX 6788211 6788277 -155811653 + Charlie8 DNA MER1_type 2344 2407 -10 1316 259 55 62 chrX 6788655 6788830 -155811100 + L1MCc LINE L1 10 185 -6238 3678 108 12 0 chrX 6788830 6789331 -155810599 + MER84 LTR ERV1 1 507 0 1316 259 55 62 chrX 6789331 6789387 -155810543 + L1MCc LINE L1 185 240 -6183 2277 118 0 0 chrX 6789387 6789693 -155810237 + AluY SINE Alu 1 306 -5 1316 259 55 62 chrX 6789693 6790038 -155809892 + L1MCc LINE L1 240 583 -5840 1735 262 68 61 chrX 6790145 6792036 -155807894 + L1MCc LINE L1 817 2923 -4199 343 232 0 24 chrX 6793254 6793336 -155806594 + MER116 DNA Mariner 1 80 0 921 86 7 13 chrX 6794354 6794506 -155805424 + (TTTC)n Simple_repeat Simple_repeat 2 152 0 1823 124 30 0 chrX 6794513 6794779 -155805151 - AluJb SINE Alu -38 274 1 625 242 122 95 chrX 6795786 6796241 -155803689 - MLT1G LTR MaLR -41 526 64 743 286 82 59 chrX 6796696 6797258 -155802672 + L1MCc LINE L1 3461 4035 -2906 333 249 100 73 chrX 6797269 6797567 -155802363 + L1MCc LINE L1 4059 4362 -2579 1354 93 0 0 chrX 6797683 6797855 -155802075 + AluY SINE Alu 128 299 -12 325 305 95 62 chrX 6797896 6799471 -155800459 + L1MCc LINE L1 4478 6103 -838 22 0 0 0 chrX 6799674 6799696 -155800234 + AT_rich Low_complexity Low_complexity 1 22 0 2390 99 0 0 chrX 6799708 6800012 -155799918 - AluSx SINE Alu -8 304 1 2294 99 0 10 chrX 6800906 6801218 -155798712 + AluSc SINE Alu 1 309 0 989 137 51 30 chrX 6801693 6801890 -155798040 - THE1C LTR MaLR 0 375 175 413 212 40 20 chrX 6801948 6802047 -155797883 + THE1B LTR MaLR 1 101 -274 463 101 14 0 chrX 6802147 6802216 -155797714 + THE1B LTR MaLR 295 364 0 2621 151 39 2 chrX 6802483 6802894 -155797036 + MSTB LTR MaLR 1 426 0 868 148 15 103 chrX 6803010 6803216 -155796714 + L1MD2 LINE L1 5826 6021 -143 205 333 28 0 chrX 6803630 6803702 -155796228 + L3 LINE CR1 1502 1575 -2 2030 127 19 6 chrX 6804439 6804753 -155795177 - L1MA10 LINE L1 -1 6333 6016 905 210 27 0 chrX 6805007 6805193 -155794737 - MER20 DNA MER1_type 0 219 29 414 311 152 7 chrX 6806225 6806495 -155793435 + L1ME3 LINE L1 5812 6120 -42 2231 185 70 8 chrX 6806791 6807155 -155792775 + L1MA8 LINE L1 5773 6176 -115 252 0 0 0 chrX 6807155 6807183 -155792747 + (CA)n Simple_repeat Simple_repeat 1 28 0 2231 185 70 8 chrX 6807183 6807304 -155792626 + L1MA8 LINE L1 6176 6288 -3 1677 172 0 7 chrX 6807334 6807625 -155792305 - AluSx SINE Alu -23 289 1 1983 99 13 40 chrX 6808214 6808516 -155791414 - L1PA16 LINE L1 -2 6164 5871 249 139 0 0 chrX 6808517 6808560 -155791370 + (T)n Simple_repeat Simple_repeat 1 43 0 394 239 43 34 chrX 6809136 6809253 -155790677 + MIR3 SINE MIR 12 129 -79 219 36 0 0 chrX 6809258 6809286 -155790644 + (TTGG)n Simple_repeat Simple_repeat 4 31 0 2352 94 3 14 chrX 6859489 6859786 -155740144 + AluSp SINE Alu 1 294 -19 269 198 0 172 chrX 6860766 6860882 -155739048 + 5S rRNA rRNA 2 97 -24 321 188 0 75 chrX 6861810 6861890 -155738040 + 5S rRNA rRNA 2 75 -46 288 200 0 0 chrX 6862742 6862792 -155737138 + 5S rRNA rRNA 2 51 -70 315 190 0 172 chrX 6863672 6863788 -155736142 + 5S rRNA rRNA 2 97 -24 305 190 0 172 chrX 6864604 6864720 -155735210 + 5S rRNA rRNA 2 97 -24 284 198 0 172 chrX 6865535 6865651 -155734279 + 5S rRNA rRNA 2 97 -24 333 188 0 75 chrX 6866579 6866659 -155733271 + 5S rRNA rRNA 2 75 -46 1656 189 3 0 chrX 6867498 6867795 -155732135 - AluJb SINE Alu -14 298 1 809 302 127 18 chrX 6867799 6868289 -155731641 - HAL1 LINE L1 -351 2156 1614 1245 171 89 37 chrX 6868538 6868807 -155731123 - AluJb SINE Alu -29 283 1 2508 51 0 3 chrX 6868818 6869130 -155730800 - AluY SINE Alu 0 311 1 792 250 70 4 chrX 6869138 6869366 -155730564 - MER33 DNA MER1_type -47 277 35 836 168 0 7 chrX 6869889 6870032 -155729898 + FLAM_C SINE Alu 2 143 0 232 292 0 14 chrX 6870190 6870262 -155729668 + CT-rich Low_complexity Low_complexity 1 71 0 506 255 27 34 chrX 6870376 6870525 -155729405 - MIR SINE MIR -12 250 103 2399 70 0 0 chrX 6871967 6872268 -155727662 + AluY SINE Alu 1 301 -10 1293 151 9 9 chrX 6872654 6872872 -155727058 + AluJo SINE Alu 1 218 -94 287 167 0 33 chrX 6872874 6872934 -155726996 + AluJo SINE Alu 86 143 -159 552 190 51 118 chrX 6873060 6873255 -155726675 - L1M3 LINE L1 -550 5630 5449 831 195 0 7 chrX 6873925 6874074 -155725856 + AluJo SINE Alu 2 149 -163 1526 183 15 0 chrX 6874077 6874350 -155725580 + AluJb SINE Alu 18 294 -18 2016 223 35 68 chrX 6874401 6875006 -155724924 + L1ME1 LINE L1 5462 6046 -120 2595 145 20 86 chrX 6875007 6875251 -155724679 + MLT1D LTR MaLR 2 260 -245 1928 153 45 70 chrX 6875251 6875694 -155724236 - MSTB1 LTR MaLR 0 432 1 2595 145 20 86 chrX 6875694 6875920 -155724010 + MLT1D LTR MaLR 260 435 -70 587 197 354 36 chrX 6875920 6876039 -155723891 + AluJo SINE Alu 2 82 -220 2236 99 0 6 chrX 6876039 6876353 -155723577 + AluSx SINE Alu 1 312 0 587 197 354 36 chrX 6876353 6876456 -155723474 + AluJo SINE Alu 82 295 -7 2595 145 20 86 chrX 6876456 6876522 -155723408 + MLT1D LTR MaLR 435 504 -1 367 214 34 26 chrX 6876532 6876649 -155723281 + L1MA10 LINE L1 6210 6327 -7 1693 110 18 28 chrX 6876662 6876944 -155722986 - AluSx SINE Alu -13 299 21 1032 244 57 37 chrX 6877289 6877642 -155722288 + MLT1D LTR MaLR 1 360 -145 694 160 17 33 chrX 6877646 6877827 -155722103 + CT-rich Low_complexity Low_complexity 3 180 0 1758 171 3 3 chrX 6877833 6878143 -155721787 - AluJo SINE Alu -2 310 1 885 152 0 40 chrX 6878145 6878181 -155721749 + MLT1D LTR MaLR 357 393 -112 1922 181 72 84 chrX 6878181 6878220 -155721710 - MLT2B1 LTR ERVL 0 520 482 354 45 0 0 chrX 6878220 6878264 -155721666 + (TA)n Simple_repeat Simple_repeat 1 44 0 1922 181 72 84 chrX 6878264 6878749 -155721181 - MLT2B1 LTR ERVL -38 482 2 885 152 0 40 chrX 6878749 6878863 -155721067 + MLT1D LTR MaLR 393 501 -4 186 263 24 71 chrX 6878866 6878993 -155720937 + MIR SINE MIR 99 216 -46 481 146 10 10 chrX 6879222 6879325 -155720605 - MER96B DNA MER1_type? -246 171 69 1177 143 5 24 chrX 6879334 6879364 -155720566 + AluJb SINE Alu 106 135 -177 2041 91 0 11 chrX 6879364 6879701 -155720229 + AluSx SINE Alu 1 334 0 1177 143 5 24 chrX 6879701 6879878 -155720052 + AluJb SINE Alu 135 310 -2 594 254 62 18 chrX 6879937 6880161 -155719769 + Charlie4a DNA MER1_type 244 477 -31 1874 142 13 0 chrX 6880228 6880531 -155719399 - AluJb SINE Alu -5 307 1 2026 138 97 17 chrX 6880723 6881084 -155718846 - MLT1B LTR MaLR 0 390 1 2154 96 3 0 chrX 6881844 6882137 -155717793 + AluSx SINE Alu 1 294 -18 1827 155 0 37 chrX 6882395 6882718 -155717212 - AluJo SINE Alu 0 312 2 5506 165 32 29 chrX 6882729 6883805 -155716125 - L1MC2 LINE L1 0 6344 5266 241 229 0 0 chrX 6883787 6883843 -155716087 - L1MC4 LINE L1 -1333 6709 6653 * 339 25 0 0 chrX 6883843 6883883 -155716047 + (CA)n Simple_repeat Simple_repeat 2 41 0 490 101 14 0 chrX 6883898 6883967 -155715963 - AluJb SINE Alu -30 282 213 1558 208 72 24 chrX 6883993 6884411 -155715519 - L1MC2 LINE L1 -877 5269 4832 2242 74 13 10 chrX 6885738 6886049 -155713881 + AluSx SINE Alu 1 312 0 204 40 0 0 chrX 6887251 6887276 -155712654 + (CCG)n Simple_repeat Simple_repeat 3 27 0 24 0 0 0 chrX 6887323 6887347 -155712583 + GC_rich Low_complexity Low_complexity 1 24 0 34 65 0 0 chrX 6887408 6887470 -155712460 + GC_rich Low_complexity Low_complexity 1 62 0 25 0 0 0 chrX 6887526 6887551 -155712379 + GC_rich Low_complexity Low_complexity 1 25 0 1958 95 7 7 chrX 6888745 6889029 -155710901 + AluSq SINE Alu 19 302 -11 2227 64 3 32 chrX 6889102 6889414 -155710516 + AluY SINE Alu 1 303 -8 448 204 49 49 chrX 6889922 6890064 -155709866 - LTR33 LTR ERVL 0 521 380 436 226 13 0 chrX 6890132 6890224 -155709706 + MLT1I LTR MaLR 60 154 -266 2523 55 0 0 chrX 6890224 6890534 -155709396 - AluY SINE Alu -1 310 1 322 302 12 0 chrX 6891522 6891608 -155708322 + GA-rich Low_complexity Low_complexity 1 87 0 23 0 0 0 chrX 6892287 6892310 -155707620 + AT_rich Low_complexity Low_complexity 1 23 0 457 255 20 7 chrX 6892347 6892496 -155707434 - HAL1 LINE L1 -72 2435 2285 1164 208 99 70 chrX 6892600 6893085 -155706845 + L1MC5 LINE L1 7043 7541 -420 318 222 32 79 chrX 6893162 6893288 -155706642 + L1ME3A LINE L1 5962 6081 -89 1520 161 44 17 chrX 6893342 6893640 -155706290 - AluJo SINE Alu 0 312 7 2089 72 58 3 chrX 6894153 6894279 -155705651 + AluSc SINE Alu 1 119 -190 2643 60 12 0 chrX 6894279 6894613 -155705317 + L1PA7 LINE L1 5817 6154 0 2089 72 58 3 chrX 6894613 6894778 -155705152 + AluSc SINE Alu 119 308 -1 398 308 48 56 chrX 6895180 6895430 -155704500 + HERV16 LTR ERVL 402 649 -4347 195 42 0 0 chrX 6896829 6896853 -155703077 + (TAAAA)n Simple_repeat Simple_repeat 2 25 0 190 0 32 32 chrX 6897511 6897542 -155702388 + (TA)n Simple_repeat Simple_repeat 1 31 0 2210 90 3 3 chrX 6900267 6900567 -155699363 + AluSc SINE Alu 1 300 -9 1643 136 16 63 chrX 6900896 6901213 -155698717 - AluJo SINE Alu -10 302 1 793 236 22 6 chrX 6901419 6901597 -155698333 + MER5A DNA MER1_type 9 189 0 16078 112 14 17 chrX 6901714 6904104 -155695826 + Tigger1 DNA MER2_type 30 2412 -6 317 269 171 16 chrX 6904251 6904496 -155695434 + L1ME4a LINE L1 5757 6039 -82 1598 151 105 44 chrX 6905358 6905702 -155694228 - MLT1A1 LTR MaLR 0 365 1 219 283 179 55 chrX 6906081 6906226 -155693704 - MIR SINE MIR -12 250 88 220 291 128 51 chrX 6906724 6906841 -155693089 - MER5B DNA MER1_type -23 155 30 255 229 59 29 chrX 6907597 6907767 -155692163 + (CATATA)n Simple_repeat Simple_repeat 6 180 0 * 349 249 34 17 chrX 6907721 6907898 -155692032 + (TA)n Simple_repeat Simple_repeat 1 180 0 1490 104 0 5 chrX 6907942 6908154 -155691776 + AluSg/x SINE Alu 87 297 -15 2541 43 0 0 chrX 6908233 6908537 -155691393 + AluY SINE Alu 1 304 -7 355 301 157 31 chrX 6909184 6909413 -155690517 + L2 LINE L2 3056 3313 0 1338 219 50 7 chrX 6909950 6910252 -155689678 - MER58B DNA MER1_type -18 323 9 256 302 47 9 chrX 6910617 6910723 -155689207 + L2 LINE L2 3156 3265 -7 1964 130 0 7 chrX 6911000 6911284 -155688646 + AluSx SINE Alu 1 282 -30 259 203 95 14 chrX 6911941 6912015 -155687915 + MLT1F LTR MaLR 1 80 -574 1767 223 126 27 chrX 6912298 6912855 -155687075 - MLT1E3 LTR MaLR -5 619 8 639 270 39 28 chrX 6913087 6913265 -155686665 + MER5A DNA MER1_type 4 183 -6 237 269 220 43 chrX 6913792 6913933 -155685997 + MIR SINE MIR 2 167 -95 1786 174 7 20 chrX 6913939 6914288 -155685642 + L1MB8 LINE L1 5263 5608 -566 1650 199 46 9 chrX 6914294 6914640 -155685290 - MLT1A1 LTR MaLR -6 359 1 2181 176 134 12 chrX 6914640 6915140 -155684790 + L1MB8 LINE L1 5603 6163 -15 3869 156 9 3 chrX 6915238 6915871 -155684059 + L1MB3 LINE L1 5544 6180 -3 1320 204 85 27 chrX 6917143 6917472 -155682458 + MLT1F LTR MaLR 193 540 -2 198 245 0 38 chrX 6917699 6917752 -155682178 + MIR SINE MIR 25 75 -133 484 243 5 19 chrX 6917892 6918078 -155681852 - MLT1E LTR MaLR -7 560 331 722 217 39 78 chrX 6918080 6918310 -155681620 - MLT1E LTR MaLR -370 223 3 551 221 0 10 chrX 6918348 6918452 -155681478 + MIR SINE MIR 6 108 -154 27 0 0 0 chrX 6919087 6919114 -155680816 + AT_rich Low_complexity Low_complexity 1 27 0 530 306 45 25 chrX 6919154 6919353 -155680577 + MIR SINE MIR 46 248 -14 271 231 130 59 chrX 6919501 6919670 -155680260 + MLT1H LTR MaLR 95 275 -274 536 243 28 0 chrX 6920106 6920250 -155679680 - L1MD2 LINE L1 0 6359 6212 481 296 58 17 chrX 6920296 6920468 -155679462 + MIR SINE MIR 72 250 -12 2418 262 67 39 chrX 6920615 6921543 -155678387 + HAL1b LINE L1 334 1293 -55 243 0 0 0 chrX 6921543 6921570 -155678360 + (TTTTA)n Simple_repeat Simple_repeat 4 30 0 2418 262 67 39 chrX 6921570 6921628 -155678302 + HAL1b LINE L1 1293 1348 0 201 39 0 0 chrX 6922882 6922908 -155677022 + (TG)n Simple_repeat Simple_repeat 2 27 0 2579 66 0 0 chrX 6923123 6923427 -155676503 + AluY SINE Alu 1 304 -7 956 228 29 0 chrX 6924641 6924847 -155675083 - MER20 DNA MER1_type 0 219 8 467 319 24 24 chrX 6924855 6925065 -155674865 + LTR16B LTR ERVL 197 406 -58 4945 129 39 14 chrX 6925115 6925877 -155674053 - MER41-int LTR ERV1 -3115 2831 2051 1345 152 0 15 chrX 6925878 6926125 -155673805 - AluJb SINE Alu 0 327 84 767 233 7 0 chrX 6926125 6926275 -155673655 - MER5A DNA MER1_type -38 151 1 315 305 64 35 chrX 6926358 6926499 -155673431 - MIR3 SINE MIR -27 181 37 23 0 0 0 chrX 6927256 6927279 -155672651 + AT_rich Low_complexity Low_complexity 1 23 0 868 321 25 101 chrX 6928574 6929184 -155670746 - Tigger8 DNA MER2_type -6 660 110 4186 33 0 0 chrX 6929184 6929643 -155670287 - L1PA6 LINE L1 -13 6141 5683 868 321 25 101 chrX 6929643 6929745 -155670185 - Tigger8 DNA MER2_type -556 110 2 959 174 43 22 chrX 6930181 6930365 -155669565 - MER20 DNA MER1_type 0 219 32 427 313 16 11 chrX 6930786 6930968 -155668962 + L1ME4a LINE L1 5726 5908 -213 1637 184 16 29 chrX 6932147 6932463 -155667467 + AluJo SINE Alu 1 312 0 278 326 31 0 chrX 6932535 6932633 -155667297 + MIR3 SINE MIR 108 208 0 314 374 108 28 chrX 6934337 6934586 -155665344 + L2 LINE L2 2976 3244 -28 424 289 46 33 chrX 6934978 6935130 -155664800 + MIR SINE MIR 4 157 -105 2558 196 10 6 chrX 6935462 6935963 -155663967 + L1MD3 LINE L1 7366 7868 -127 1786 136 72 0 chrX 6936422 6936714 -155663216 - AluSx SINE Alu 0 311 1 191 294 164 34 chrX 6936883 6937029 -155662901 + MIR SINE MIR 47 211 -51 279 0 0 0 chrX 6937430 6937461 -155662469 + (TG)n Simple_repeat Simple_repeat 1 31 0 495 267 50 22 chrX 6937578 6937758 -155662172 + L1MC4 LINE L1 7356 7540 -502 898 204 32 16 chrX 6937758 6937944 -155661986 - MER20 DNA MER1_type 0 219 31 186 43 0 0 chrX 6938353 6938376 -155661554 + (T)n Simple_repeat Simple_repeat 1 23 0 990 114 15 0 chrX 6938438 6938569 -155661361 + FLAM_C SINE Alu 1 133 0 1019 139 0 6 chrX 6939175 6939333 -155660597 + L1MA5A LINE L1 6134 6290 -7 21 36 0 0 chrX 6939333 6939361 -155660569 + AT_rich Low_complexity Low_complexity 1 28 0 853 133 0 0 chrX 6939372 6939492 -155660438 - FRAM SINE Alu -20 156 37 943 122 0 10 chrX 6940586 6940770 -155659160 - AluJb SINE Alu -54 258 1 337 234 170 28 chrX 6940899 6941040 -155658890 + MER5A DNA MER1_type 26 186 -3 661 249 57 24 chrX 6942503 6942712 -155657218 + MIR SINE MIR 23 238 -24 986 210 119 32 chrX 6942719 6943091 -155656839 - MLT1C LTR MaLR -35 432 13 1929 268 37 54 chrX 6943179 6944094 -155655836 - L1M4 LINE L1 -2576 3570 2671 240 292 26 0 chrX 6944671 6944784 -155655146 + (TA)n Simple_repeat Simple_repeat 1 116 0 212 193 46 28 chrX 6944746 6944855 -155655075 + (TTATA)n Simple_repeat Simple_repeat 2 112 0 * 22 0 0 0 chrX 6944876 6944898 -155655032 + AT_rich Low_complexity Low_complexity 1 22 0 258 274 22 17 chrX 6944902 6945134 -155654796 + (TA)n Simple_repeat Simple_repeat 1 233 0 22 0 0 0 chrX 6945134 6945156 -155654774 + AT_rich Low_complexity Low_complexity 1 22 0 323 152 217 43 chrX 6945248 6945340 -155654590 + ORSL DNA AcHobo 161 268 -7 1710 121 118 7 chrX 6946023 6946295 -155653635 + AluJo SINE Alu 1 302 -10 2030 142 0 7 chrX 6946408 6946704 -155653226 - AluSx SINE Alu -18 294 1 951 283 51 20 chrX 6946932 6947324 -155652606 + L1ME1 LINE L1 4911 5314 -832 1236 237 15 4 chrX 6947324 6947594 -155652336 - AluJo SINE Alu -2 310 38 1917 203 116 51 chrX 6947594 6947769 -155652161 + L1ME1 LINE L1 5320 5482 -684 2112 127 7 7 chrX 6947769 6948077 -155651853 + AluJb SINE Alu 1 308 -4 1917 203 116 51 chrX 6948077 6948488 -155651442 + L1ME1 LINE L1 5482 5944 -222 578 172 43 17 chrX 6948493 6948609 -155651321 + MER45A DNA AcHobo 60 178 0 2030 123 0 0 chrX 6949967 6950244 -155649686 - AluSx SINE Alu -35 277 1 252 0 0 0 chrX 6950600 6950628 -155649302 + (TG)n Simple_repeat Simple_repeat 2 29 0 1256 276 131 16 chrX 6950851 6951278 -155648652 - MLT1G1 LTR MaLR -73 522 47 190 305 55 70 chrX 6952707 6952835 -155647095 - L2 LINE L2 -1 3312 3187 765 256 39 62 chrX 6953162 6953430 -155646500 + L1ME3 LINE L1 5862 6124 -38 1499 172 15 8 chrX 6953430 6953697 -155646233 + AluJb SINE Alu 1 269 -43 765 256 39 62 chrX 6953697 6953736 -155646194 + L1ME3 LINE L1 6124 6162 0 7189 194 53 77 chrX 6953794 6955834 -155644096 + L1MC4a LINE L1 5817 7808 0 213 179 0 0 chrX 6956015 6956054 -155643876 - MIR SINE MIR -108 154 116 224 264 11 55 chrX 6956191 6956282 -155643648 + GA-rich Low_complexity Low_complexity 4 90 0 446 131 9 37 chrX 6956644 6956751 -155643179 + (TAGA)n Simple_repeat Simple_repeat 1 104 0 1809 140 7 4 chrX 6956929 6957200 -155642730 - AluJo SINE Alu -17 295 24 529 289 128 38 chrX 6957203 6957376 -155642554 - L2 LINE L2 -12 3301 3145 1476 114 274 0 chrX 6957376 6957613 -155642317 + AluSx SINE Alu 1 302 0 529 289 128 38 chrX 6957613 6957910 -155642020 - L2 LINE L2 -168 3145 2791 940 231 15 0 chrX 6959218 6959417 -155640513 - L1MC4a LINE L1 -960 6848 6647 2633 222 1 39 chrX 6959717 6960366 -155639564 - L1M4 LINE L1 -1101 5045 4421 364 280 7 53 chrX 6961228 6961378 -155638552 - LTR16B LTR ERVL -321 143 1 2176 66 4 4 chrX 6961577 6961848 -155638082 - AluSq SINE Alu -7 306 36 325 232 40 111 chrX 6963037 6963235 -155636695 + L2 LINE L2 3118 3301 -12 3490 206 15 48 chrX 6964183 6964673 -155635257 + L1ME1 LINE L1 5343 5795 -371 1863 153 7 17 chrX 6964673 6964968 -155634962 + AluJo SINE Alu 1 292 -20 3490 206 15 48 chrX 6964968 6965325 -155634605 + L1ME1 LINE L1 5795 6162 -4 738 303 71 29 chrX 6965462 6965842 -155634088 - Charlie7 DNA MER1_type -1923 689 294 1597 141 23 19 chrX 6965986 6966249 -155633681 - AluJo SINE Alu -6 306 43 2289 115 0 3 chrX 6966259 6966572 -155633358 - AluSx SINE Alu 0 312 1 1719 174 0 14 chrX 6967139 6967432 -155632498 + AluJb SINE Alu 12 300 -12 864 201 34 0 chrX 6967565 6967744 -155632186 - MER20 DNA MER1_type -1 218 34 702 126 0 0 chrX 6967989 6968092 -155631838 + AluSg/x SINE Alu 208 310 0 773 154 32 0 chrX 6968253 6968376 -155631554 + FLAM_C SINE Alu 2 128 -5 24 32 0 0 chrX 6968381 6968412 -155631518 + AT_rich Low_complexity Low_complexity 1 31 0 466 291 179 22 chrX 6968562 6968881 -155631049 - L2 LINE L2 -7 3265 2897 209 295 189 18 chrX 6969388 6969605 -155630325 - L2 LINE L2 -833 2481 2228 338 178 55 0 chrX 6969676 6969749 -155630181 - MER5A DNA MER1_type -110 79 3 422 288 20 0 chrX 6969943 6970089 -155629841 - MER104 DNA Tc2 -26 154 6 2279 107 3 0 chrX 6970471 6970769 -155629161 + AluSx SINE Alu 1 299 -13 845 90 14 14 chrX 6970773 6970917 -155629013 + (GAAA)n Simple_repeat Simple_repeat 1 144 0 1806 136 15 0 chrX 6971029 6971302 -155628628 - L1PA15 LINE L1 0 6165 5889 267 226 50 0 chrX 6973011 6973101 -155626829 + MER5A DNA MER1_type 4 99 -90 716 267 52 9 chrX 6973155 6973365 -155626565 + MER58A DNA MER1_type 1 219 -5 420 144 62 33 chrX 6973429 6973920 -155626010 + GA-rich Low_complexity Low_complexity 1 505 0 200 179 27 54 chrX 6973936 6974048 -155625882 + GA-rich Low_complexity Low_complexity 1 109 0 2032 102 18 7 chrX 6974510 6974784 -155625146 + AluSg SINE Alu 2 278 -32 189 74 0 0 chrX 6974784 6974811 -155625119 + (GA)n Simple_repeat Simple_repeat 2 28 0 1580 149 29 40 chrX 6976001 6976276 -155623654 + AluJo SINE Alu 5 276 -36 739 172 0 22 chrX 6976622 6976756 -155623174 - MLT1C LTR MaLR 0 467 337 978 182 0 0 chrX 6976802 6976978 -155622952 - FRAM SINE Alu 0 176 1 1386 185 89 15 chrX 6976979 6977304 -155622626 - MLT1C LTR MaLR -115 352 4 191 287 0 46 chrX 6977734 6977821 -155622109 + L2 LINE L2 2871 2953 -319 2145 127 0 0 chrX 6977875 6978200 -155621730 + AluSx SINE Alu 2 312 0 266 299 0 0 chrX 6979659 6979726 -155620204 + (TATATG)n Simple_repeat Simple_repeat 6 72 0 201 74 0 0 chrX 6981413 6981440 -155618490 + (TG)n Simple_repeat Simple_repeat 1 27 0 203 161 0 0 chrX 6981440 6981471 -155618459 + (CA)n Simple_repeat Simple_repeat 1 31 0 2541 176 12 16 chrX 6981986 6982470 -155617460 + L1MB5 LINE L1 5674 6155 -19 433 241 188 0 chrX 6982850 6982983 -155616947 + MER5A DNA MER1_type 7 164 -25 2200 120 3 7 chrX 6983392 6983693 -155616237 - AluSx SINE Alu -10 302 3 326 252 53 8 chrX 6983828 6983959 -155615971 - L2 LINE L2 -811 2503 2367 817 176 0 0 chrX 6983989 6984114 -155615816 + AluJ SINE Alu 1 125 -187 444 89 38 0 chrX 6984114 6984193 -155615737 + (TA)n Simple_repeat Simple_repeat 2 83 0 1168 148 23 0 chrX 6984193 6984369 -155615561 + AluJ SINE Alu 133 312 0 22 35 0 0 chrX 6984885 6984914 -155615016 + AT_rich Low_complexity Low_complexity 1 29 0 35 54 0 0 chrX 6984982 6985038 -155614892 + AT_rich Low_complexity Low_complexity 1 56 0 578 193 379 0 chrX 6985759 6985899 -155614031 + Tigger5 DNA MER2_type 1 193 -2130 339 237 0 13 chrX 6985901 6985977 -155613953 + Tigger5 DNA MER2_type 2248 2322 -1 616 299 22 9 chrX 6986097 6986321 -155613609 - MLT1J2 LTR MaLR -223 227 1 387 283 10 0 chrX 6986716 6986815 -155613115 + MER58A DNA MER1_type 1 100 -124 2060 138 3 0 chrX 6986820 6987109 -155612821 + AluJo SINE Alu 1 290 -22 21 36 0 0 chrX 6987109 6987137 -155612793 + AT_rich Low_complexity Low_complexity 1 28 0 25 0 0 0 chrX 6988044 6988069 -155611861 + AT_rich Low_complexity Low_complexity 1 25 0 22 0 0 0 chrX 6988467 6988489 -155611441 + AT_rich Low_complexity Low_complexity 1 22 0 487 208 57 78 chrX 6989837 6989887 -155610043 - MER5A DNA MER1_type 0 189 139 2122 145 0 0 chrX 6989887 6990197 -155609733 - AluJo SINE Alu -2 310 1 487 208 57 78 chrX 6990197 6990338 -155609592 - MER5A DNA MER1_type -50 139 2 1672 174 3 17 chrX 6990872 6991166 -155608764 + AluJo SINE Alu 1 290 -22 276 278 0 33 chrX 6991353 6991443 -155608487 + GA-rich Low_complexity Low_complexity 4 90 0 304 366 0 13 chrX 6991938 6992091 -155607839 + (CA)n Simple_repeat Simple_repeat 2 152 0 * 316 369 20 7 chrX 6991989 6992138 -155607792 + (CACG)n Simple_repeat Simple_repeat 4 154 0 * 331 273 56 28 chrX 6992100 6992243 -155607687 + (CATG)n Simple_repeat Simple_repeat 1 147 0 769 188 0 0 chrX 6994581 6994714 -155605216 + AluJb SINE Alu 2 134 -178 1751 172 30 0 chrX 6994721 6995056 -155604874 + AluJb SINE Alu 1 344 0 572 158 9 0 chrX 6995371 6995485 -155604445 + CT-rich Low_complexity Low_complexity 3 117 0 2266 155 25 59 chrX 6995674 6995970 -155603960 + Tigger2a DNA MER2_type 6 284 -2424 2059 133 0 7 chrX 6995970 6996272 -155603658 - AluJb SINE Alu -10 302 3 2266 155 25 59 chrX 6996272 6996419 -155603511 + Tigger2a DNA MER2_type 284 434 0 1231 207 29 42 chrX 6997073 6997382 -155602548 + MER33 DNA MER1_type 17 321 -3 1771 150 52 0 chrX 6997396 6997708 -155602222 - AluJb SINE Alu 0 326 1 215 156 0 22 chrX 6997753 6997798 -155602132 + MIR3 SINE MIR 111 154 -54 197 336 37 37 chrX 6997901 6998008 -155601922 + MIR SINE MIR 20 126 -136 1778 163 10 0 chrX 6999026 6999321 -155600609 + AluJo SINE Alu 1 298 -14 1894 159 3 34 chrX 6999561 6999881 -155600049 - AluJb SINE Alu 0 312 3 2037 106 10 36 chrX 6999912 7000215 -155599715 - AluSx SINE Alu -17 295 1 443 252 56 0 chrX 7000425 7000568 -155599362 - HAL1 LINE L1 -1234 1273 1123 400 307 24 54 chrX 7000623 7000789 -155599141 + LTR16C LTR ERVL 54 214 -277 1072 234 38 62 chrX 7000789 7001110 -155598820 - L1MD2 LINE L1 -289 5885 5580 25 0 0 0 chrX 7002021 7002046 -155597884 + AT_rich Low_complexity Low_complexity 1 25 0 1830 209 70 27 chrX 7003175 7003692 -155596238 + MLT1F LTR MaLR 4 542 0 1988 139 10 10 chrX 7004117 7004399 -155595531 + AluSx SINE Alu 1 285 -178 240 35 0 0 chrX 7004399 7004428 -155595502 + (GAGAA)n Simple_repeat Simple_repeat 2 30 0 1988 139 10 10 chrX 7004428 7004608 -155595322 + AluSx SINE Alu 284 463 0 631 112 11 0 chrX 7004801 7004890 -155595040 - AluJb SINE Alu -15 297 208 581 292 46 25 chrX 7005515 7005755 -155594175 - MIR SINE MIR -14 248 4 1762 132 28 60 chrX 7006207 7006525 -155593405 - AluJb SINE Alu -4 308 1 267 54 0 0 chrX 7006708 7006745 -155593185 + (CA)n Simple_repeat Simple_repeat 2 38 0 274 336 17 26 chrX 7007184 7007300 -155592630 - MIR3 SINE MIR -6 202 88 2321 65 0 14 chrX 7007529 7007820 -155592110 - AluY SINE Alu -13 298 12 1927 140 6 32 chrX 7009049 7009364 -155590566 + AluSx SINE Alu 3 309 -3 1841 143 59 3 chrX 7009498 7009785 -155590145 - AluJb SINE Alu -9 303 1 965 168 0 0 chrX 7009925 7010080 -155589850 - FRAM SINE Alu -21 155 1 201 291 13 25 chrX 7010085 7010164 -155589766 - MIR SINE MIR -108 154 77 2798 210 29 0 chrX 7010186 7010730 -155589200 + MLT1F1 LTR MaLR 6 565 -2 283 405 8 0 chrX 7010936 7011067 -155588863 + L2 LINE L2 3141 3272 0 789 118 41 145 chrX 7011832 7012053 -155587877 + MER3 DNA MER1_type 5 202 -7 1543 180 8 8 chrX 7012431 7012698 -155587232 + AluJo SINE Alu 1 267 -45 791 126 0 53 chrX 7012728 7012918 -155587012 + (GGGA)n Simple_repeat Simple_repeat 1 180 0 287 186 17 0 chrX 7013194 7013253 -155586677 + L1ME3A LINE L1 5509 5568 -594 677 260 64 20 chrX 7013265 7013515 -155586415 + L1ME3A LINE L1 5632 5892 -278 1813 169 0 42 chrX 7013696 7014003 -155585927 + AluJb SINE Alu 1 294 -18 1990 109 0 81 chrX 7014213 7014533 -155585397 - AluSx SINE Alu 0 312 19 2668 39 0 7 chrX 7014558 7014864 -155585066 - AluY SINE Alu -7 304 1 236 146 119 33 chrX 7014960 7015035 -155584895 - MLT1F1 LTR MaLR -29 538 453 2579 68 3 0 chrX 7015386 7015695 -155584235 - AluSp SINE Alu -3 310 1 320 0 0 24 chrX 7016502 7016543 -155583387 + (TC)n Simple_repeat Simple_repeat 2 41 0 359 285 74 20 chrX 7016761 7017044 -155582886 + Zaphod DNA AcHobo 388 4031 0 1169 112 0 12 chrX 7017514 7017683 -155582247 + AluJb SINE Alu 1 167 -145 208 262 0 119 chrX 7018181 7018265 -155581665 + L2 LINE L2 3240 3313 0 323 307 80 59 chrX 7018408 7018831 -155581099 - MLT1K LTR MaLR -8 580 149 536 263 34 22 chrX 7019153 7019332 -155580598 - MER58A DNA MER1_type -18 206 26 831 216 11 11 chrX 7019510 7019686 -155580244 + FRAM SINE Alu 1 176 0 3136 170 116 10 chrX 7019701 7020279 -155579651 + MER44D DNA MER2_type 1 639 -66 701 193 0 0 chrX 7020284 7020403 -155579527 + FLAM_C SINE Alu 3 121 -12 25 21 0 43 chrX 7020406 7020424 -155579506 + AT_rich Low_complexity Low_complexity 1 18 -27 2073 103 3 3 chrX 7020424 7020715 -155579215 - AluSx SINE Alu -21 291 1 25 21 0 43 chrX 7020715 7020743 -155579187 + AT_rich Low_complexity Low_complexity 18 45 0 619 187 0 19 chrX 7020743 7020850 -155579080 + MER44D DNA MER2_type 628 604 -1 2235 93 3 0 chrX 7021329 7021639 -155578291 + AluSx SINE Alu 1 311 -1 2115 93 3 3 chrX 7022163 7022452 -155577478 + AluSx SINE Alu 1 289 -23 1601 148 40 7 chrX 7022658 7022956 -155576974 - AluJb SINE Alu -4 308 1 2256 75 0 31 chrX 7023853 7024171 -155575759 - AluY SINE Alu -3 308 1 2139 92 0 0 chrX 7024173 7024455 -155575475 - AluSx SINE Alu -30 282 1 375 244 0 0 chrX 7024461 7024547 -155575383 + L1MC4a LINE L1 7472 7557 -251 302 160 0 0 chrX 7024768 7024818 -155575112 + MER58 DNA MER1_type 174 223 -118 2223 109 0 0 chrX 7025180 7025491 -155574439 - AluSx SINE Alu -1 311 1 180 0 0 0 chrX 7025493 7025513 -155574417 + (T)n Simple_repeat Simple_repeat 1 20 0 237 224 0 0 chrX 7025847 7025896 -155574034 + MLT1I LTR MaLR 85 133 -276 229 213 131 0 chrX 7026023 7026084 -155573846 + MLT1I LTR MaLR 341 409 0 1903 147 98 0 chrX 7026821 7027148 -155572782 + MLT1A1 LTR MaLR 3 361 -4 232 269 32 11 chrX 7027453 7027546 -155572384 + (CA)n Simple_repeat Simple_repeat 2 96 0 300 53 0 0 chrX 7027946 7027984 -155571946 + (TG)n Simple_repeat Simple_repeat 2 39 0 477 270 137 63 chrX 7028048 7028577 -155571353 + L1MC4 LINE L1 6959 7448 -594 1888 125 4 0 chrX 7028577 7028856 -155571074 + AluJb SINE Alu 4 283 -29 201 39 0 0 chrX 7028856 7028882 -155571048 + (TTAA)n Simple_repeat Simple_repeat 1 26 0 477 270 137 63 chrX 7028882 7029044 -155570886 + L1MC4 LINE L1 7447 7702 -340 536 264 8 0 chrX 7029393 7029522 -155570408 - L1PB4 LINE L1 -76 6080 5951 221 274 88 10 chrX 7029853 7029955 -155569975 + MIR SINE MIR 153 262 0 820 158 0 0 chrX 7030605 7030725 -155569205 + FLAM_C SINE Alu 2 121 -22 1029 170 0 0 chrX 7030892 7031057 -155568873 - FRAM SINE Alu -1 165 1 650 251 138 0 chrX 7031449 7031644 -155568286 + MER58A DNA MER1_type 1 222 -2 * 908 204 63 12 chrX 7031643 7031898 -155568032 - MER33 DNA MER1_type 0 324 57 386 240 0 10 chrX 7032041 7032137 -155567793 - MER53 DNA DNA -72 117 23 2134 131 0 0 chrX 7032363 7032675 -155567255 + AluSx SINE Alu 1 312 0 1772 180 0 0 chrX 7032950 7033255 -155566675 + AluSx SINE Alu 1 305 -7 956 171 12 0 chrX 7034418 7034582 -155565348 + AluJb SINE Alu 136 301 -11 1922 144 0 0 chrX 7034631 7034929 -155565001 - AluSx SINE Alu -14 298 1 620 91 0 0 chrX 7035015 7035103 -155564827 + L1MB4 LINE L1 6093 6180 0 227 307 26 44 chrX 7035899 7036013 -155563917 - L2 LINE L2 -491 2823 2712 1706 196 37 64 chrX 7036023 7036478 -155563452 + MLT1C LTR MaLR 25 467 0 314 319 22 44 chrX 7036478 7036613 -155563317 - L2 LINE L2 -587 2727 2596 238 383 126 19 chrX 7036881 7037142 -155562788 - L2 LINE L2 -1919 1395 1107 404 245 56 47 chrX 7037251 7037433 -155562497 + L1ME3A LINE L1 5771 5957 -217 189 0 0 0 chrX 7037699 7037720 -155562210 + (TA)n Simple_repeat Simple_repeat 2 22 0 2201 88 13 0 chrX 7037733 7038038 -155561892 - AluSp SINE Alu -4 309 1 869 95 20 7 chrX 7038136 7038284 -155561646 + (GAAA)n Simple_repeat Simple_repeat 3 152 0 473 304 164 68 chrX 7038287 7038745 -155561185 - MLT1K LTR MaLR -75 513 12 1906 29 4 12 chrX 7039128 7039368 -155560562 + AluY SINE Alu 73 310 -1 1578 189 105 6 chrX 7040394 7040728 -155559202 + MLT1B LTR MaLR 23 389 -1 224 261 14 14 chrX 7041926 7042064 -155557866 + CT-rich Low_complexity Low_complexity 4 141 0 * 374 219 13 32 chrX 7042035 7042360 -155557570 + C-rich Low_complexity Low_complexity 1 318 0 270 81 0 0 chrX 7042464 7042501 -155557429 + (TCCCC)n Simple_repeat Simple_repeat 1 37 0 29 28 0 0 chrX 7042590 7042626 -155557304 + GC_rich Low_complexity Low_complexity 1 36 0 376 296 17 34 chrX 7043381 7043560 -155556370 - L1ME4a LINE L1 -192 5929 5754 934 151 0 0 chrX 7043839 7043985 -155555945 + AluJb SINE Alu 167 312 0 2139 119 0 0 chrX 7044237 7044539 -155555391 - AluSx SINE Alu -10 302 1 1782 111 48 24 chrX 7044549 7044838 -155555092 - AluSc SINE Alu -13 296 1 2293 176 55 31 chrX 7045260 7045619 -155554311 + L1MB7 LINE L1 5647 6023 -161 1852 164 3 0 chrX 7045619 7045930 -155554000 - AluJb SINE Alu 0 312 1 2293 176 55 31 chrX 7045930 7046080 -155553850 + L1MB7 LINE L1 6023 6168 -16 728 186 0 8 chrX 7046128 7046257 -155553673 + AluJ SINE Alu 1 128 -174 2012 130 0 0 chrX 7046604 7046903 -155553027 + AluSx SINE Alu 2 300 -12 328 229 156 0 chrX 7046904 7047000 -155552930 + L1MCa LINE L1 1980 2090 -4336 509 256 29 70 chrX 7047126 7047368 -155552562 + MER112 DNA MER1_type 29 260 0 911 249 9 0 chrX 7047370 7047583 -155552347 + MER20 DNA MER1_type 1 215 -4 1939 124 3 16 chrX 7047615 7047922 -155552008 + AluSx SINE Alu 1 303 -9 1111 131 0 22 chrX 7047922 7048105 -155551825 + AluJ SINE Alu 134 312 0 498 325 0 0 chrX 7048462 7048613 -155551317 - MER5B DNA MER1_type -2 176 26 1184 140 48 34 chrX 7048909 7049116 -155550814 - MER20 DNA MER1_type -9 210 1 917 198 131 79 chrX 7049970 7050103 -155549827 - MER45C DNA AcHobo -630 951 826 907 205 0 0 chrX 7050103 7050264 -155549666 - FRAM SINE Alu -5 161 1 917 198 131 79 chrX 7050264 7050459 -155549471 - MER45C DNA AcHobo -755 826 606 613 226 161 6 chrX 7050440 7050608 -155549322 - MER45C DNA AcHobo -686 267 74 * 2417 69 3 0 chrX 7051376 7051681 -155548249 - AluSp SINE Alu -7 306 1 21 36 0 0 chrX 7052507 7052535 -155547395 + AT_rich Low_complexity Low_complexity 1 28 0 2297 99 0 3 chrX 7053373 7053686 -155546244 + AluSx SINE Alu 1 312 0 2089 112 0 0 chrX 7053806 7054110 -155545820 + AluSx SINE Alu 1 304 -8 2442 239 14 11 chrX 7054906 7055462 -155544468 - MER82 DNA MER2_type -93 560 3 351 294 162 15 chrX 7055713 7055849 -155544081 + MIR SINE MIR 40 195 -67 345 301 44 0 chrX 7056250 7056386 -155543544 + L1ME3A LINE L1 6002 6143 -27 186 133 0 0 chrX 7056655 7056685 -155543245 + (GGAA)n Simple_repeat Simple_repeat 3 32 0 2168 118 0 0 chrX 7057040 7057344 -155542586 + AluJb SINE Alu 1 304 -8 931 194 0 0 chrX 7058072 7058242 -155541688 + FRAM SINE Alu 1 169 -7 1116 172 0 0 chrX 7058244 7058424 -155541506 + MER46B DNA MER2_type 1 55 -181 1672 165 0 14 chrX 7058424 7058715 -155541215 + AluJo SINE Alu 1 287 -25 1220 134 23 14 chrX 7058728 7058944 -155540986 + MER46B DNA MER2_type 19 236 0 21 0 0 0 chrX 7059425 7059446 -155540484 + AT_rich Low_complexity Low_complexity 1 21 0 369 0 0 0 chrX 7059749 7059790 -155540140 + (TG)n Simple_repeat Simple_repeat 2 42 0 1655 104 0 0 chrX 7059790 7060010 -155539920 - AluSg/x SINE Alu -27 285 66 955 148 0 37 chrX 7060010 7060172 -155539758 - MER20 DNA MER1_type -37 182 27 1658 147 0 64 chrX 7060316 7060628 -155539302 + AluJb SINE Alu 9 300 -12 2346 93 0 0 chrX 7061039 7061349 -155538581 + AluSx SINE Alu 1 310 -2 2037 143 93 25 chrX 7061406 7061805 -155538125 + MSTB LTR MaLR 1 426 0 1416 148 31 68 chrX 7061829 7062153 -155537777 + AluJo SINE Alu 1 312 0 599 336 63 41 chrX 7062442 7062955 -155536975 - L2 LINE L2 -2 3270 2748 2038 126 0 0 chrX 7062959 7063253 -155536677 - AluJo SINE Alu -18 294 1 239 264 56 42 chrX 7063273 7063345 -155536585 - MLT1D LTR MaLR -432 73 1 2237 97 0 0 chrX 7063694 7063992 -155535938 + AluSx SINE Alu 1 298 -14 1310 262 64 68 chrX 7064109 7064354 -155535576 - L1MC4 LINE L1 -143 7899 7654 2078 120 0 0 chrX 7064354 7064653 -155535277 - AluSx SINE Alu -13 299 1 1310 262 64 68 chrX 7064653 7064744 -155535186 - L1MC4 LINE L1 -388 7654 7564 1661 164 7 23 chrX 7064744 7065054 -155534876 + AluJo SINE Alu 1 305 -7 2558 173 19 8 chrX 7065056 7065536 -155534394 - L1MB3 LINE L1 -10 6173 5689 1310 262 64 68 chrX 7065536 7065855 -155534075 - L1MC4 LINE L1 -479 7563 7243 328 274 0 0 chrX 7066324 7066408 -155533522 + MER34 LTR ERV1 1 84 -458 2596 150 55 9 chrX 7066421 7066873 -155533057 + LTR29 LTR ERV1 137 609 -13 201 214 48 0 chrX 7066997 7067039 -155532891 + (TAGG)n Simple_repeat Simple_repeat 3 46 0 1585 149 7 18 chrX 7067174 7067455 -155532475 + AluJo SINE Alu 24 301 -11 380 350 36 0 chrX 7067458 7067598 -155532332 + L2 LINE L2 3164 3308 -5 2690 182 72 30 chrX 7067761 7068360 -155531570 + MLT1E3 LTR MaLR 1 624 0 1547 165 4 0 chrX 7068775 7069048 -155530882 + AluJo SINE Alu 38 311 -1 967 237 23 5 chrX 7069565 7069780 -155530150 + MER20 DNA MER1_type 1 219 0 2015 128 3 3 chrX 7071170 7071475 -155528455 - AluSx SINE Alu -7 305 1 214 257 69 109 chrX 7071502 7071603 -155528327 - L2 LINE L2 -16 3256 3160 822 167 0 7 chrX 7071678 7071822 -155528108 + FLAM_C SINE Alu 1 143 0 1806 148 7 13 chrX 7071825 7071960 -155527970 + AluSx SINE Alu 1 135 -177 2078 118 0 0 chrX 7071960 7072344 -155527586 + AluSx SINE Alu 1 312 0 1806 148 7 13 chrX 7072344 7072511 -155527419 + AluSx SINE Alu 135 301 -11 22 0 0 0 chrX 7072728 7072750 -155527180 + AT_rich Low_complexity Low_complexity 1 22 0 185 401 39 6 chrX 7072977 7073159 -155526771 - L2 LINE L2 -258 3014 2827 506 246 99 47 chrX 7073668 7073839 -155526091 + L1ME3 LINE L1 5969 6148 -14 193 393 0 0 chrX 7074011 7074067 -155525863 - L2 LINE L2 -219 3053 2998 1596 146 36 4 chrX 7074309 7074583 -155525347 - AluJb SINE Alu -29 283 1 187 321 58 29 chrX 7074598 7074735 -155525195 + MIR SINE MIR 74 214 -48 800 133 0 0 chrX 7075523 7075643 -155524287 + FLAM_C SINE Alu 1 120 -23 2799 109 26 9 chrX 7076173 7076594 -155523336 - MSTA LTR MaLR 0 428 1 6636 83 42 3 chrX 7076901 7077970 -155521960 - L1PA14 LINE L1 -1 6160 5079 1666 207 105 41 chrX 7077971 7078396 -155521534 - MLT1F LTR MaLR -27 515 54 1546 198 58 33 chrX 7078396 7078760 -155521170 - MLT1A2 LTR MaLR 0 374 2 1666 207 105 41 chrX 7078760 7078818 -155521112 - MLT1F LTR MaLR -488 54 1 349 313 54 27 chrX 7078886 7079048 -155520882 + MIR SINE MIR 1 170 -38 353 253 38 0 chrX 7079538 7079617 -155520313 + MIR SINE MIR 148 229 -33 921 203 18 53 chrX 7080366 7080593 -155519337 - MER20 DNA MER1_type 0 219 1 324 288 0 0 chrX 7080629 7080702 -155519228 - L2 LINE L2 -4 3268 3196 1360 160 23 105 chrX 7081114 7081458 -155518472 + AluYb8 SINE Alu 1 316 -2 411 233 338 0 chrX 7081616 7081749 -155518181 + MER5A DNA MER1_type 1 178 -11 2123 82 3 17 chrX 7081763 7082057 -155517873 + AluSc SINE Alu 6 295 -14 581 312 46 9 chrX 7083231 7083449 -155516481 - LTR67 LTR ERVL 0 557 332 1118 254 58 96 chrX 7083530 7083565 -155516365 + MLT1J LTR MaLR 20 55 -456 962 204 9 23 chrX 7083565 7083785 -155516145 + MER20 DNA MER1_type 1 217 -2 1118 254 58 96 chrX 7083785 7083957 -155515973 + MLT1J LTR MaLR 55 232 -279 1572 215 43 27 chrX 7083957 7084325 -155515605 - MLT1A2 LTR MaLR 0 374 1 1118 254 58 96 chrX 7084325 7084452 -155515478 + MLT1J LTR MaLR 232 362 -149 2492 35 0 6 chrX 7084452 7084764 -155515166 + AluY SINE Alu 1 310 -1 1118 254 58 96 chrX 7084764 7084926 -155515004 + MLT1J LTR MaLR 362 499 -12 1149 198 116 79 chrX 7085416 7085530 -155514400 + MER58B DNA MER1_type 1 109 -2311 1802 141 3 14 chrX 7085530 7085821 -155514109 - AluJb SINE Alu -24 288 1 1149 198 116 79 chrX 7085821 7086035 -155513895 + MER58B DNA MER1_type 109 341 0 249 197 13 145 chrX 7086198 7086274 -155513656 + MER45C DNA AcHobo 447 512 -441 286 293 13 0 chrX 7086280 7086355 -155513575 + MER45C DNA AcHobo 878 953 0 1704 219 28 0 chrX 7086571 7086927 -155513003 + LTR16C LTR ERVL 126 491 0 649 269 12 6 chrX 7088458 7088618 -155511312 + MLT1H LTR MaLR 386 546 -3 26 0 0 49 chrX 7088704 7088729 -155511201 + AT_rich Low_complexity Low_complexity 1 25 -14 2246 107 0 0 chrX 7088729 7089038 -155510892 + AluSx SINE Alu 1 309 -3 26 0 0 49 chrX 7089038 7089053 -155510877 + AT_rich Low_complexity Low_complexity 25 39 0 812 196 0 0 chrX 7089103 7089236 -155510694 + AluJb SINE Alu 2 134 -178 1997 248 72 19 chrX 7089238 7089887 -155510043 - L1ME2 LINE L1 -55 6109 5426 631 130 0 0 chrX 7090004 7090096 -155509834 - AluJ/FLAM SINE Alu -220 92 1 554 286 108 52 chrX 7090407 7090638 -155509292 - L2 LINE L2 0 3272 3029 1671 177 81 0 chrX 7090730 7091040 -155508890 + MER7A DNA MER2_type 14 346 0 3051 188 46 2 chrX 7091177 7091783 -155508147 + L1MB5 LINE L1 5541 6173 -1 1014 159 0 0 chrX 7091952 7092115 -155507815 + AluJb SINE Alu 138 300 -12 271 343 133 14 chrX 7092462 7092672 -155507258 - MIR SINE MIR -26 236 2 1557 147 9 69 chrX 7092761 7092903 -155507027 + AluJo SINE Alu 1 150 -162 2294 79 0 0 chrX 7092903 7093193 -155506737 + AluSx SINE Alu 1 290 -22 1557 147 9 69 chrX 7093193 7093369 -155506561 + AluJo SINE Alu 150 300 -12 1239 197 5 5 chrX 7093518 7093741 -155506189 - MER58A DNA MER1_type 0 224 2 1858 145 3 13 chrX 7093772 7094075 -155505855 - AluJo SINE Alu -6 306 7 1600 163 48 3 chrX 7094748 7095042 -155504888 - AluJb SINE Alu -5 307 1 1987 114 3 10 chrX 7095160 7095458 -155504472 - AluSq SINE Alu -17 296 1 2346 213 82 53 chrX 7095547 7095846 -155504084 - L1MD2 LINE L1 -2 6357 6068 2199 75 0 0 chrX 7095846 7096126 -155503804 + AluSx SINE Alu 27 306 -6 2346 213 82 53 chrX 7096126 7096543 -155503387 - L1MD2 LINE L1 -291 6068 5620 198 71 0 0 chrX 7096788 7096816 -155503114 + (GA)n Simple_repeat Simple_repeat 1 28 0 1784 113 6 73 chrX 7097156 7097484 -155502446 - AluJo SINE Alu -6 306 1 2346 35 3 0 chrX 7097669 7097976 -155501954 - AluY SINE Alu 0 308 1 2195 87 0 0 chrX 7098298 7098586 -155501344 + AluSg1 SINE Alu 1 288 -21 261 109 0 0 chrX 7098586 7098632 -155501298 + (GGAA)n Simple_repeat Simple_repeat 1 46 0 2326 82 3 3 chrX 7098633 7098939 -155500991 + AluY SINE Alu 3 308 -3 231 191 0 0 chrX 7098943 7098985 -155500945 + L2 LINE L2 3268 3309 -4 224 329 161 7 chrX 7099058 7099195 -155500735 + MIR SINE MIR 3 160 -102 1173 181 191 61 chrX 7099202 7099610 -155500320 + MLT1C LTR MaLR 6 466 -1 814 313 23 32 chrX 7099791 7100136 -155499794 + MLT1L LTR MaLR 125 466 -149 279 270 0 0 chrX 7100243 7100306 -155499624 + MLT1K LTR MaLR 526 588 0 1992 115 0 0 chrX 7100407 7100686 -155499244 + AluSq SINE Alu 7 285 -28 1804 165 3 0 chrX 7100703 7101012 -155498918 + AluJo SINE Alu 1 310 -2 561 294 61 5 chrX 7101316 7101530 -155498400 + L1MC/D LINE L1 5543 5768 -2040 1709 141 3 50 chrX 7101670 7101798 -155498132 + 7SLRNA srpRNA srpRNA 20 152 -168 1996 125 0 0 chrX 7101798 7102095 -155497835 + AluSq SINE Alu 6 302 -11 360 0 0 0 chrX 7102096 7102136 -155497794 + (TAGA)n Simple_repeat Simple_repeat 4 43 0 1709 141 3 50 chrX 7102136 7102304 -155497626 + 7SLRNA srpRNA srpRNA 151 304 -16 24 0 0 0 chrX 7102304 7102328 -155497602 + AT_rich Low_complexity Low_complexity 1 24 0 338 247 0 0 chrX 7103771 7103848 -155496082 + 5S rRNA rRNA 7 83 -38 302 143 9 171 chrX 7104018 7104123 -155495807 + 5S rRNA rRNA 2 89 -32 321 160 0 0 chrX 7104949 7104999 -155494931 + 5S rRNA rRNA 2 51 -70 333 188 0 75 chrX 7105993 7106073 -155493857 + 5S rRNA rRNA 2 75 -46 321 160 0 0 chrX 7106925 7106975 -155492955 + 5S rRNA rRNA 2 51 -70 333 188 0 75 chrX 7107969 7108049 -155491881 + 5S rRNA rRNA 2 75 -46 300 180 0 0 chrX 7108901 7108951 -155490979 + 5S rRNA rRNA 2 51 -70 284 198 0 172 chrX 7109833 7109949 -155489981 + 5S rRNA rRNA 2 97 -24 333 188 0 75 chrX 7110876 7110956 -155488974 + 5S rRNA rRNA 2 75 -46 329 179 0 170 chrX 7111808 7111914 -155488016 + 5S rRNA rRNA 2 89 -32 333 188 0 75 chrX 7112852 7112932 -155486998 + 5S rRNA rRNA 2 75 -46 328 181 0 172 chrX 7113784 7113900 -155486030 + 5S rRNA rRNA 2 97 -24 260 228 0 76 chrX 7114830 7114909 -155485021 + 5S rRNA rRNA 3 75 -46 333 188 0 75 chrX 7115874 7115954 -155483976 + 5S rRNA rRNA 2 75 -46 768 154 0 15 chrX 7116577 7116707 -155483223 - AluJo SINE Alu -173 139 12 309 180 0 0 chrX 7117786 7117836 -155482094 + 5S rRNA rRNA 2 51 -70 330 181 0 172 chrX 7118718 7118834 -155481096 + 5S rRNA rRNA 2 97 -24 321 160 0 0 chrX 7119649 7119699 -155480231 + 5S rRNA rRNA 2 51 -70 533 42 14 0 chrX 7121445 7121517 -155478413 + (TAGA)n Simple_repeat Simple_repeat 4 76 0 180 77 0 0 chrX 7121520 7121546 -155478384 + (GA)n Simple_repeat Simple_repeat 2 27 0 1632 173 15 0 chrX 7121548 7121819 -155478111 - AluJo SINE Alu -37 275 1 419 189 0 150 chrX 7122092 7122181 -155477749 - MER5B DNA MER1_type -41 137 71 2172 77 14 7 chrX 7122181 7122478 -155477452 - AluSq SINE Alu -14 299 1 419 189 0 150 chrX 7122478 7122515 -155477415 - MER5B DNA MER1_type -107 71 30 1246 161 169 0 chrX 7122679 7122940 -155476990 + AluSx SINE Alu 1 305 -7 643 209 209 0 chrX 7122944 7123097 -155476833 - MER5A DNA MER1_type -3 186 2 706 205 0 0 chrX 7123303 7123430 -155476500 + FRAM SINE Alu 4 130 -46 194 139 47 0 chrX 7123430 7123473 -155476457 + GA-rich Low_complexity Low_complexity 2 46 0 1383 226 174 22 chrX 7123956 7124455 -155475475 + MLT1E1 LTR MaLR 5 616 -38 22 0 0 0 chrX 7124456 7124478 -155475452 + AT_rich Low_complexity Low_complexity 1 22 0 1817 212 42 25 chrX 7124503 7124951 -155474979 - MLT2B1 LTR ERVL -64 456 1 2182 88 3 0 chrX 7125010 7125320 -155474610 - AluSp SINE Alu 0 311 1 1515 136 70 86 chrX 7125576 7125878 -155474052 - AluJb SINE Alu -15 297 1 352 276 9 19 chrX 7125880 7125985 -155473945 + MLT2B1 LTR ERVL 86 189 -331 431 197 0 0 chrX 7125993 7126069 -155473861 - AluS SINE Alu -235 78 3 1788 85 114 14 chrX 7126530 7126811 -155473119 + AluSg SINE Alu 2 310 0 725 231 27 43 chrX 7126851 7126916 -155473014 + MER5A DNA MER1_type 7 72 -117 2181 83 17 3 chrX 7126916 7127217 -155472713 + AluSx SINE Alu 1 305 -7 725 231 27 43 chrX 7127217 7127337 -155472593 + MER5A DNA MER1_type 72 189 0 275 335 97 0 chrX 7127528 7127683 -155472247 - MIR SINE MIR -13 249 80 368 206 65 0 chrX 7127705 7127797 -155472133 - MLT2B1 LTR ERVL -422 98 1 315 130 0 0 chrX 7128103 7128149 -155471781 - Alu SINE Alu -10 292 247 1169 249 134 22 chrX 7129072 7129084 -155470846 - MLT1E LTR MaLR 0 624 615 2240 159 10 8 chrX 7129084 7129473 -155470457 - MLT1B LTR MaLR 0 390 1 1169 249 134 22 chrX 7129473 7129685 -155470245 - MLT1E LTR MaLR -9 615 428 1623 185 0 30 chrX 7129685 7129987 -155469943 + AluJb SINE Alu 1 293 -19 1169 249 134 22 chrX 7129987 7130170 -155469760 - MLT1E LTR MaLR -196 428 267 2214 89 6 13 chrX 7130170 7130483 -155469447 + AluSx SINE Alu 1 311 -1 1169 249 134 22 chrX 7130483 7130556 -155469374 - MLT1E LTR MaLR -357 267 20 969 106 0 0 chrX 7131655 7131787 -155468143 + AluSg/x SINE Alu 154 285 -25 1934 161 17 17 chrX 7132599 7132953 -155466977 - L1MB5 LINE L1 0 6174 5821 24 32 0 0 chrX 7132953 7132984 -155466946 + AT_rich Low_complexity Low_complexity 1 31 0 209 180 120 0 chrX 7132991 7133041 -155466889 - L2 LINE L2 -1 3312 3257 2003 72 3 28 chrX 7134115 7134247 -155465683 + AluY SINE Alu 1 135 -172 198 0 0 0 chrX 7134247 7134269 -155465661 + (TAAA)n Simple_repeat Simple_repeat 3 24 0 2003 72 3 28 chrX 7134269 7134450 -155465480 + AluY SINE Alu 135 307 0 1693 144 11 0 chrX 7134525 7134839 -155465091 - AluJb SINE Alu 0 317 1 2250 76 0 7 chrX 7135764 7136068 -155463862 + AluSc SINE Alu 1 302 -7 509 120 0 0 chrX 7136884 7136959 -155462971 + U3 snRNA snRNA 13 87 -130 2178 90 3 0 chrX 7137441 7137729 -155462201 + AluSq SINE Alu 1 289 -24 319 254 15 142 chrX 7138008 7138213 -155461717 - MIR SINE MIR -54 208 30 859 206 110 77 chrX 7138509 7138833 -155461097 - MLT2C1 LTR ERVL -3 394 60 1842 219 13 44 chrX 7138833 7139307 -155460623 + MLT1C LTR MaLR 1 459 -8 245 234 31 16 chrX 7139313 7139377 -155460553 - MLT2C1 LTR ERVL -331 66 2 476 157 29 0 chrX 7139380 7139482 -155460448 + CT-rich Low_complexity Low_complexity 5 109 0 1712 166 3 3 chrX 7139555 7139856 -155460074 + AluJb SINE Alu 1 301 -11 1538 160 23 20 chrX 7140126 7140426 -155459504 - AluJo SINE Alu -11 301 1 1386 244 90 5 chrX 7140564 7140966 -155458964 - L1MD3 LINE L1 0 7995 7560 27 0 0 0 chrX 7142120 7142147 -155457783 + AT_rich Low_complexity Low_complexity 1 27 0 358 307 48 96 chrX 7142731 7143134 -155456796 - L1MEc LINE L1 -2792 3423 2118 309 155 14 113 chrX 7145081 7145152 -155454778 + MER20 DNA MER1_type 2 65 -154 268 264 75 19 chrX 7145385 7145491 -155454439 + MIR3 SINE MIR 43 154 -54 183 100 0 0 chrX 7145492 7145522 -155454408 + (TA)n Simple_repeat Simple_repeat 1 30 0 1201 169 4 30 chrX 7145636 7145867 -155454063 - AluJo SINE Alu -76 236 12 2014 103 27 0 chrX 7145920 7146221 -155453709 - AluSx SINE Alu -3 309 1 373 257 68 68 chrX 7146368 7146574 -155453356 - L1ME1 LINE L1 -4 6162 5957 1088 81 37 6 chrX 7146868 7147029 -155452901 - L1MA2 LINE L1 -4 6300 6135 1710 111 71 7 chrX 7147033 7147313 -155452617 - AluSx SINE Alu -14 298 1 2036 126 3 0 chrX 7147391 7147692 -155452238 - AluSq SINE Alu -11 302 1 1285 169 61 102 chrX 7149037 7149350 -155450580 - AluJo SINE Alu -2 300 1 2177 86 17 0 chrX 7149395 7149685 -155450245 + AluY SINE Alu 1 295 -16 23 0 0 0 chrX 7150965 7150988 -155448942 + AT_rich Low_complexity Low_complexity 1 23 0 2170 100 0 0 chrX 7151632 7151932 -155447998 - AluSx SINE Alu -12 300 1 1897 100 40 27 chrX 7151977 7152304 -155447626 - AluSx SINE Alu 0 312 1 814 247 28 13 chrX 7154412 7154664 -155445266 - L1MA10 LINE L1 0 6334 5926 284 114 0 65 chrX 7154818 7154864 -155445066 + MIR SINE MIR 115 158 -50 1727 147 102 30 chrX 7155166 7155527 -155444403 + LTR8A LTR ERV1 1 387 -340 7011 102 58 36 chrX 7155529 7155935 -155443995 + HUERS-P1 LTR ERV1 1919 2315 -2565 2054 85 41 0 chrX 7155935 7156225 -155443705 + AluSg SINE Alu 1 301 0 7011 102 58 36 chrX 7156225 7156697 -155443233 + HUERS-P1 LTR ERV1 2315 2775 -2105 243 0 0 0 chrX 7156697 7156724 -155443206 + (TG)n Simple_repeat Simple_repeat 2 28 0 2128 84 3 14 chrX 7156724 7157011 -155442919 - AluSp SINE Alu -28 285 2 7011 102 58 36 chrX 7157011 7157264 -155442666 + HUERS-P1 LTR ERV1 2774 3078 -1802 * 7611 150 59 49 chrX 7157263 7158988 -155440942 + HUERS-P1 LTR ERV1 3805 5790 -529 765 169 77 64 chrX 7158997 7159273 -155440657 + HUERS-P1 LTR ERV1 5914 6226 -105 691 243 24 18 chrX 7159351 7159520 -155440410 + HUERS-P1 LTR ERV1 6090 6259 -4 615 104 26 70 chrX 7159523 7159638 -155440292 + LTR8A LTR ERV1 1 110 -617 619 183 35 9 chrX 7159648 7159763 -155440167 + LTR8A LTR ERV1 610 727 0 567 222 58 48 chrX 7159763 7159935 -155439995 + MER20 DNA MER1_type 46 219 0 1323 238 49 46 chrX 7160705 7160776 -155439154 - L1ME1 LINE L1 -2 6160 6091 1575 121 111 35 chrX 7160776 7161065 -155438865 - AluJo SINE Alu -1 311 1 1323 238 49 46 chrX 7161065 7161493 -155438437 - L1ME1 LINE L1 -71 6091 5681 623 179 4 197 chrX 7161496 7161560 -155438370 - MER5A DNA MER1_type 0 189 114 1499 167 10 38 chrX 7161560 7161853 -155438077 + AluJo SINE Alu 3 287 -25 623 179 4 197 chrX 7161853 7162022 -155437908 - MER5A DNA MER1_type -75 114 1 26 0 0 0 chrX 7162657 7162683 -155437247 + AT_rich Low_complexity Low_complexity 1 26 0 2945 133 23 40 chrX 7162709 7162998 -155436932 + MER4B LTR ERV1 31 323 -456 1650 187 20 0 chrX 7162998 7163292 -155436638 - AluJb SINE Alu -12 300 1 2945 133 23 40 chrX 7163292 7163591 -155436339 + MER4B LTR ERV1 323 779 0 1549 188 63 12 chrX 7163892 7164227 -155435703 - L1MB7 LINE L1 0 6184 5833 2330 190 36 20 chrX 7164934 7165429 -155434501 - MLT1D LTR MaLR -2 503 1 201 156 0 0 chrX 7165596 7165628 -155434302 + (ATTG)n Simple_repeat Simple_repeat 4 35 0 751 138 17 0 chrX 7165628 7165744 -155434186 - FLAM_C SINE Alu -15 118 1 310 118 224 0 chrX 7166184 7166269 -155433661 - MLT1I LTR MaLR -25 384 281 263 270 52 26 chrX 7166433 7166548 -155433382 - MLT1I LTR MaLR -375 174 57 1560 180 10 16 chrX 7166723 7167029 -155432901 - AluJo SINE Alu -8 304 1 948 172 37 42 chrX 7167077 7167292 -155432638 + MER20 DNA MER1_type 6 219 0 214 229 0 21 chrX 7167296 7167344 -155432586 + MER5A DNA MER1_type 140 186 -3 1801 149 0 13 chrX 7167734 7168036 -155431894 - AluJo SINE Alu -9 303 6 318 26 0 0 chrX 7168059 7168098 -155431832 + (TA)n Simple_repeat Simple_repeat 2 40 0 1120 144 0 0 chrX 7168098 7168265 -155431665 - AluJb SINE Alu -11 301 135 540 0 0 0 chrX 7169597 7169657 -155430273 + (TG)n Simple_repeat Simple_repeat 2 61 0 1515 168 7 34 chrX 7170238 7170558 -155429372 + AluJb SINE Alu 1 312 0 34 24 0 0 chrX 7171330 7171371 -155428559 + AT_rich Low_complexity Low_complexity 1 41 0 2250 226 127 3 chrX 7172215 7172796 -155427134 + MER82 DNA MER2_type 1 653 0 268 295 26 0 chrX 7173273 7173351 -155426579 - MER116 DNA Mariner 0 80 1 1943 148 0 0 chrX 7173885 7174190 -155425740 + AluJb SINE Alu 1 305 -7 346 148 0 0 chrX 7174443 7174497 -155425433 + AluJ/FLAM SINE Alu 39 92 -210 676 188 0 19 chrX 7174499 7174659 -155425271 + CT-rich Low_complexity Low_complexity 2 158 0 792 144 0 30 chrX 7174662 7174794 -155425136 - FLAM_C SINE Alu -5 128 1 2217 100 0 7 chrX 7176452 7176753 -155423177 + AluSq SINE Alu 1 299 -14 1878 144 26 7 chrX 7176761 7177067 -155422863 + AluJo SINE Alu 1 312 0 2189 101 0 3 chrX 7177073 7177371 -155422559 + AluSq SINE Alu 3 299 -14 953 223 14 18 chrX 7177569 7177789 -155422141 + MER20 DNA MER1_type 1 219 0 345 231 66 11 chrX 7177905 7177996 -155421934 + MIR SINE MIR 6 101 -161 1195 194 26 15 chrX 7178750 7179023 -155420907 + MER33 DNA MER1_type 2 277 -47 231 288 15 15 chrX 7179315 7179381 -155420549 - MIR SINE MIR -179 83 18 183 220 0 60 chrX 7179422 7179472 -155420458 + L2 LINE L2 3198 3244 -69 229 184 0 0 chrX 7179516 7179554 -155420376 + MSTD LTR MaLR 219 256 -140 * 378 243 29 29 chrX 7179549 7179755 -155420175 + MLT1A2 LTR MaLR 166 363 -65 23059 129 68 24 chrX 7179768 7185837 -155414093 + L1PA8A LINE L1 1 6425 -21 2044 57 89 14 chrX 7185864 7186144 -155413786 + AluY SINE Alu 1 301 -10 1962 142 0 3 chrX 7186241 7186544 -155413386 - AluJb SINE Alu -10 302 1 919 160 71 6 chrX 7186845 7187014 -155412916 + MER20 DNA MER1_type 40 219 0 656 181 0 97 chrX 7187292 7187338 -155412592 + MER58B DNA MER1_type 187 236 -2184 1995 138 44 99 chrX 7187338 7187774 -155412156 + MLT2D LTR ERVL 1 412 -2 656 181 0 97 chrX 7187774 7187882 -155412048 + MER58B DNA MER1_type 236 326 -15 1723 148 14 0 chrX 7188623 7188907 -155411023 - AluJb SINE Alu -14 298 11 231 129 0 0 chrX 7188909 7188940 -155410990 - AluJb SINE Alu -271 31 1 2082 87 33 3 chrX 7189257 7189557 -155410373 - AluSx SINE Alu -3 309 1 375 299 84 13 chrX 7190157 7190311 -155409619 + MIR SINE MIR 90 254 -8 1011 178 29 34 chrX 7190362 7190481 -155409449 + MER20 DNA MER1_type 2 121 -98 2052 157 99 20 chrX 7190481 7190876 -155409054 - MSTB LTR MaLR 0 426 1 1011 178 29 34 chrX 7190876 7190964 -155408966 + MER20 DNA MER1_type 121 208 -11 364 246 48 97 chrX 7191330 7191558 -155408372 - L1MD2 LINE L1 0 6359 6143 789 180 101 37 chrX 7192566 7192783 -155407147 + L1MB8 LINE L1 5948 6178 0 1742 128 42 23 chrX 7194581 7194887 -155405043 + AluJo SINE Alu 1 312 0 629 248 13 7 chrX 7194925 7195074 -155404856 + MER58B DNA MER1_type 174 323 -18 825 229 5 11 chrX 7195996 7196184 -155403746 - AluJo SINE Alu -5 307 121 1698 175 0 19 chrX 7197568 7197876 -155402054 + AluJo SINE Alu 1 302 -10 897 230 4 57 chrX 7198293 7198541 -155401389 + MER8 DNA MER2_type 1 235 -4 463 168 21 11 chrX 7198657 7198752 -155401178 + MER3 DNA MER1_type 65 160 -49 1852 149 3 7 chrX 7198768 7199077 -155400853 - AluJo SINE Alu -4 308 1 225 313 45 0 chrX 7200179 7200291 -155399639 + (CACGT)n Simple_repeat Simple_repeat 4 120 0 321 237 154 39 chrX 7200502 7200658 -155399272 - Charlie4 DNA MER1_type -5 1956 1783 2290 190 45 28 chrX 7200669 7200719 -155399211 - L1MB2 LINE L1 0 6171 6123 2421 81 0 0 chrX 7200719 7201026 -155398904 - AluSx SINE Alu -5 307 1 2290 190 45 28 chrX 7201026 7201485 -155398445 - L1MB2 LINE L1 -48 6123 5653 1584 145 0 0 chrX 7201504 7201752 -155398178 - AluJo SINE Alu -6 306 59 247 219 86 29 chrX 7201761 7201866 -155398064 - L2 LINE L2 -649 2665 2555 210 118 0 0 chrX 7202852 7202886 -155397044 + (TG)n Simple_repeat Simple_repeat 1 34 0 188 109 55 18 chrX 7202886 7202941 -155396989 + GA-rich Low_complexity Low_complexity 2 58 0 791 192 50 50 chrX 7203335 7203533 -155396397 - MER58B DNA MER1_type -4 337 140 245 238 48 24 chrX 7204249 7204333 -155395597 - L1M1 LINE L1 -7463 102 17 458 242 224 19 chrX 7204354 7204515 -155395415 - MER58B DNA MER1_type -1 340 147 1436 155 0 45 chrX 7204515 7204559 -155395371 - L1MB3 LINE L1 -87 6096 6052 1398 158 88 32 chrX 7204559 7204843 -155395087 - AluJo SINE Alu -2 300 1 1436 155 0 45 chrX 7204843 7205099 -155394831 - L1MB3 LINE L1 -131 6052 5817 605 256 0 19 chrX 7205916 7206076 -155393854 + MER58A DNA MER1_type 40 196 -28 1580 170 37 13 chrX 7206419 7206719 -155393211 + AluJo SINE Alu 1 307 -5 251 93 23 0 chrX 7207974 7208017 -155391913 + (GGGAGA)n Simple_repeat Simple_repeat 6 49 0 456 35 0 0 chrX 7208113 7208171 -155391759 + (TG)n Simple_repeat Simple_repeat 2 59 0 799 85 0 0 chrX 7208382 7208488 -155391442 + FLAM_C SINE Alu 2 107 -36 1996 122 0 10 chrX 7208493 7208788 -155391142 - AluSx SINE Alu -14 298 7 1720 181 50 11 chrX 7209314 7209673 -155390257 - MLT1B LTR MaLR -4 386 14 1301 161 51 0 chrX 7209679 7209915 -155390015 + L1MB7 LINE L1 5929 6176 -8 302 139 76 38 chrX 7211240 7211319 -155388611 - L1MB8 LINE L1 0 6178 6097 733 230 83 5 chrX 7211516 7211733 -155388197 - L1MB1 LINE L1 -24 6144 5911 191 221 78 52 chrX 7211734 7211811 -155388119 + MIR SINE MIR 184 262 0 2119 102 0 3 chrX 7213014 7213308 -155386622 - AluSc SINE Alu -16 293 1 2518 147 60 4 chrX 7214067 7214537 -155385393 - L1MB3 LINE L1 0 6183 5688 347 200 0 0 chrX 7214537 7214602 -155385328 + MER3 DNA MER1_type 140 204 -5 300 325 86 0 chrX 7216059 7216210 -155383720 + MIR SINE MIR 78 241 -21 334 309 58 80 chrX 7216252 7216527 -155383403 + L2 LINE L2 2970 3238 -34 243 88 0 0 chrX 7218682 7218716 -155381214 + (T)n Simple_repeat Simple_repeat 1 34 0 277 224 0 0 chrX 7218961 7219019 -155380911 - MER69 DNA AcHobo -1960 566 509 200 256 0 0 chrX 7220207 7220246 -155379684 + C-rich Low_complexity Low_complexity 1 39 0 2100 114 0 10 chrX 7221317 7221624 -155378306 - AluSp SINE Alu -9 304 1 1637 103 0 0 chrX 7221759 7221983 -155377947 - AluSg/x SINE Alu -6 306 83 1700 163 13 23 chrX 7222018 7222319 -155377611 + AluJo SINE Alu 1 298 -14 423 281 253 18 chrX 7222575 7222970 -155376960 - L1MC4 LINE L1 -363 7679 7192 2197 87 0 3 chrX 7222997 7223296 -155376634 + AluY SINE Alu 8 305 -6 423 228 105 35 chrX 7223305 7223419 -155376511 + MER58B DNA MER1_type 191 312 -29 952 258 122 103 chrX 7223450 7223565 -155376365 - L1MC4a LINE L1 -714 7094 6983 2763 13 0 0 chrX 7223565 7223876 -155376054 - AluY SINE Alu 0 311 1 952 258 122 103 chrX 7223876 7224072 -155375858 - L1MC4a LINE L1 -825 6983 6792 2127 128 0 0 chrX 7224072 7224378 -155375552 - AluSx SINE Alu -6 306 1 952 258 122 103 chrX 7224378 7225168 -155374762 - L1MC4a LINE L1 -1016 6792 5971 584 243 89 22 chrX 7226027 7226337 -155373593 + MER58 DNA MER1_type 4 2418 -2 228 226 28 94 chrX 7226416 7226522 -155373408 + MER41D LTR ERV1 373 471 -86 1129 183 5 23 chrX 7227561 7227780 -155372150 + MER20 DNA MER1_type 1 215 -4 215 220 40 0 chrX 7227830 7227880 -155372050 + (CATATA)n Simple_repeat Simple_repeat 6 57 0 1363 236 133 33 chrX 7229503 7229618 -155370312 + MLT1D LTR MaLR 1 103 -402 1777 164 0 3 chrX 7229618 7229923 -155370007 + AluJo SINE Alu 1 304 -8 1363 236 133 33 chrX 7229923 7230260 -155369670 + MLT1D LTR MaLR 103 498 -7 1323 179 0 4 chrX 7230710 7230939 -155368991 - AluJb SINE Alu -84 228 1 21 0 0 0 chrX 7230941 7230962 -155368968 + AT_rich Low_complexity Low_complexity 1 21 0 3407 177 38 7 chrX 7231485 7231827 -155368103 - L1MB7 LINE L1 0 6184 5854 1629 181 7 16 chrX 7231827 7232137 -155367793 - AluJo SINE Alu -5 307 1 3407 177 38 7 chrX 7232137 7232477 -155367453 - L1MB7 LINE L1 -330 5854 5481 1766 157 7 4 chrX 7232664 7232944 -155366986 + AluJo SINE Alu 1 281 -31 206 81 27 0 chrX 7232949 7232986 -155366944 + (CAAAA)n Simple_repeat Simple_repeat 2 39 0 772 195 5 70 chrX 7233049 7233134 -155366796 - MLT1D LTR MaLR 0 505 416 1471 168 47 20 chrX 7233134 7233432 -155366498 + AluJo SINE Alu 1 306 -6 772 195 5 70 chrX 7233432 7233546 -155366384 - MLT1D LTR MaLR -89 416 319 227 31 31 0 chrX 7233555 7233587 -155366343 + (TTTTTG)n Simple_repeat Simple_repeat 4 36 0 513 251 125 88 chrX 7233587 7233906 -155366024 - MLT1D LTR MaLR -294 332 2 2116 117 3 0 chrX 7234994 7235301 -155364629 + AluSq SINE Alu 1 308 -5 265 359 68 13 chrX 7236931 7237165 -155362765 - MIR SINE MIR -9 253 7 477 226 0 20 chrX 7237704 7237806 -155362124 - MER20 DNA MER1_type -114 105 6 916 180 115 6 chrX 7240330 7240513 -155359417 - MER3 DNA MER1_type -1 208 6 506 261 86 37 chrX 7240650 7240895 -155359035 + HAL1 LINE L1 1383 1639 -868 989 94 0 0 chrX 7240896 7241024 -155358906 + AluSq/x SINE Alu 1 128 -184 536 293 72 71 chrX 7241026 7241210 -155358720 + HAL1 LINE L1 1670 1852 -655 2250 84 0 3 chrX 7241210 7241507 -155358423 + AluSc SINE Alu 1 296 -13 536 293 72 71 chrX 7241507 7241747 -155358183 + HAL1 LINE L1 1852 2090 -417 2525 39 0 7 chrX 7241747 7242052 -155357878 + AluY SINE Alu 1 303 -8 536 293 72 71 chrX 7242052 7242303 -155357627 + HAL1 LINE L1 2090 2347 -160 1725 167 6 6 chrX 7242305 7242617 -155357313 + AluJb SINE Alu 1 312 0 1048 192 33 14 chrX 7242875 7243089 -155356841 - MER20 DNA MER1_type 0 219 2 298 324 148 0 chrX 7243612 7243754 -155356176 - MIR3 SINE MIR -5 203 41 184 289 0 0 chrX 7244705 7244757 -155355173 + MIR SINE MIR 100 151 -57 195 131 65 19 chrX 7245007 7245114 -155354816 + (TG)n Simple_repeat Simple_repeat 1 112 0 347 147 35 56 chrX 7245162 7245516 -155354414 + (TG)n Simple_repeat Simple_repeat 1 346 0 258 157 37 46 chrX 7245532 7245640 -155354290 + (TG)n Simple_repeat Simple_repeat 1 107 0 233 180 56 73 chrX 7245568 7245746 -155354184 + (CTGTG)n Simple_repeat Simple_repeat 5 179 0 * 336 109 23 63 chrX 7245747 7245921 -155354009 + (TG)n Simple_repeat Simple_repeat 1 167 0 491 82 38 60 chrX 7246001 7246184 -155353746 + (TG)n Simple_repeat Simple_repeat 2 180 0 806 149 113 0 chrX 7246294 7246435 -155353495 + FRAM SINE Alu 1 157 -9 2463 64 0 0 chrX 7247424 7247735 -155352195 - AluY SINE Alu 0 311 1 1163 197 10 0 chrX 7247790 7247998 -155351932 - MLT1B LTR MaLR 0 390 181 2667 150 2 9 chrX 7248316 7248769 -155351161 - L1MB3 LINE L1 -3 6180 5731 235 97 0 0 chrX 7249577 7249608 -155350322 - MLT1B LTR MaLR -2 388 358 1472 145 76 46 chrX 7250940 7251243 -155348687 + AluJo SINE Alu 1 312 0 1752 203 138 7 chrX 7251614 7251738 -155348192 - L1MB7 LINE L1 -12 6172 6066 1922 123 63 36 chrX 7251738 7252103 -155347827 - THE1C LTR MaLR 0 375 1 1752 203 138 7 chrX 7252103 7252426 -155347504 - L1MB7 LINE L1 -118 6066 5666 189 0 0 0 chrX 7253454 7253475 -155346455 + (A)n Simple_repeat Simple_repeat 1 21 0 1928 148 0 3 chrX 7253478 7253782 -155346148 + AluJb SINE Alu 4 306 -6 420 156 0 26 chrX 7253978 7254055 -155345875 + Charlie5 DNA MER1_type 29 103 -2509 820 177 96 53 chrX 7254228 7254437 -155345493 + MER20 DNA MER1_type 2 219 0 741 180 0 0 chrX 7254995 7255123 -155344807 - FRAM SINE Alu -13 163 36 1232 77 0 0 chrX 7256748 7256904 -155343026 - MER4E LTR ERV1 0 766 611 1958 129 9 22 chrX 7256923 7257264 -155342666 - MER4A LTR ERV1 0 664 270 646 122 10 10 chrX 7257273 7257371 -155342559 - MER4A LTR ERV1 -566 98 1 2352 132 64 58 chrX 7257371 7257840 -155342090 - MER4B LTR ERV1 -138 472 1 743 142 112 18 chrX 7258250 7258419 -155341511 + MER20 DNA MER1_type 33 217 -2 476 314 39 18 chrX 7259552 7259781 -155340149 - L1MC5 LINE L1 -36 7925 7692 723 197 165 101 chrX 7259792 7260185 -155339745 - MLT1C LTR MaLR 0 467 33 221 288 128 24 chrX 7260398 7260523 -155339407 + MIR SINE MIR 114 251 -11 561 312 115 23 chrX 7260625 7261061 -155338869 + L1MB5 LINE L1 5264 5739 -2069 881 159 123 29 chrX 7261451 7261580 -155338350 + L1MB5 LINE L1 5803 5919 -255 881 186 10 31 chrX 7261580 7261773 -155338157 + L1MB5 LINE L1 5986 6174 0 220 271 146 10 chrX 7261811 7261907 -155338023 - MER5C DNA MER1_type -4 320 212 309 286 238 0 chrX 7262113 7262218 -155337712 + MER5A DNA MER1_type 53 182 -7 1061 248 148 9 chrX 7262316 7262655 -155337275 - MLT1B LTR MaLR -4 386 1 202 204 0 0 chrX 7262656 7262700 -155337230 + MIR SINE MIR 101 144 -118 3516 171 30 24 chrX 7262706 7263377 -155336553 + L1MB2 LINE L1 5454 6128 -43 1723 156 7 3 chrX 7263389 7263678 -155336252 + AluJo SINE Alu 13 302 -10 354 261 0 0 chrX 7264289 7264377 -155335553 - MER96B DNA MER1_type? -5 412 325 1559 232 35 26 chrX 7264386 7264770 -155335160 - L1MB8 LINE L1 -2 6176 5786 1187 217 102 6 chrX 7264770 7265084 -155334846 - MER2 DNA MER2_type 0 344 1 1559 232 35 26 chrX 7265084 7265152 -155334778 - L1MB8 LINE L1 -392 5786 5720 1312 175 64 46 chrX 7265154 7265366 -155334564 + MER96B DNA MER1_type? 86 308 -109 2222 85 17 0 chrX 7265366 7265661 -155334269 - AluSx SINE Alu -12 300 1 1312 175 64 46 chrX 7265661 7265774 -155334156 + MER96B DNA MER1_type? 308 417 0 762 223 22 33 chrX 7265955 7266139 -155333791 - MLT1C LTR MaLR 0 467 286 1606 210 108 25 chrX 7266549 7267128 -155332802 + L1MD3 LINE L1 7267 7990 -5 21 36 0 0 chrX 7268214 7268242 -155331688 + AT_rich Low_complexity Low_complexity 1 28 0 1494 191 69 29 chrX 7269220 7269597 -155330333 - L1MB4 LINE L1 0 6180 5789 2320 82 0 0 chrX 7269878 7270160 -155329770 + AluSq SINE Alu 1 282 -31 211 37 0 0 chrX 7270160 7270187 -155329743 + (TAA)n Simple_repeat Simple_repeat 1 180 0 828 130 32 87 chrX 7273159 7273344 -155326586 + MER20 DNA MER1_type 4 178 -41 491 206 56 0 chrX 7273346 7273453 -155326477 - MER20 DNA MER1_type -106 113 1 1013 192 189 80 chrX 7274688 7275037 -155324893 + MLT1B LTR MaLR 1 387 -3 1888 190 69 35 chrX 7275384 7275668 -155324262 - MLT1C LTR MaLR 0 467 194 323 39 59 0 chrX 7275668 7275719 -155324211 + T-rich Low_complexity Low_complexity 2 55 0 2307 82 0 0 chrX 7275721 7276002 -155323928 - AluSx SINE Alu -31 281 1 1888 190 69 35 chrX 7276002 7276166 -155323764 - MLT1C LTR MaLR -273 194 1 2059 161 19 33 chrX 7276894 7277261 -155322669 - MLT1A1 LTR MaLR -1 364 3 1997 118 34 10 chrX 7278527 7278823 -155321107 + AluSx SINE Alu 1 303 -9 180 111 0 0 chrX 7279099 7279126 -155320804 + (TTTC)n Simple_repeat Simple_repeat 2 28 0 1423 213 113 19 chrX 7280436 7280859 -155319071 - MLT1C LTR MaLR -4 463 1 948 181 80 38 chrX 7282673 7282911 -155317019 - MLT1F1 LTR MaLR 0 567 320 1259 164 5 5 chrX 7283240 7283460 -155316470 + AluJo SINE Alu 86 305 -7 228 281 101 11 chrX 7283859 7283948 -155315982 - L2 LINE L2 0 3272 3176 195 343 20 20 chrX 7284053 7284155 -155315775 - MIR3 SINE MIR -3 205 104 1431 150 85 68 chrX 7284533 7284569 -155315361 - AluJo SINE Alu 0 312 278 180 0 0 0 chrX 7284569 7284589 -155315341 + (TTTA)n Simple_repeat Simple_repeat 2 21 0 1431 150 85 68 chrX 7284589 7284859 -155315071 - AluJo SINE Alu -34 278 1 1013 236 100 14 chrX 7284860 7285140 -155314790 - L1MD3 LINE L1 -369 7626 7323 342 0 0 0 chrX 7286095 7286133 -155313797 + (TG)n Simple_repeat Simple_repeat 2 39 0 198 0 0 0 chrX 7286170 7286192 -155313738 + (TG)n Simple_repeat Simple_repeat 2 23 0 276 232 0 14 chrX 7286563 7286632 -155313298 - L1M LINE L1 -700 5421 5354 364 228 51 57 chrX 7289127 7289285 -155310645 - Charlie5 DNA MER1_type -29 2583 2427 571 191 0 37 chrX 7289291 7289427 -155310503 - Charlie5 DNA MER1_type -91 2521 2391 797 108 0 0 chrX 7289490 7289601 -155310329 + L1MA1 LINE L1 6188 6298 -4 25 0 0 0 chrX 7290146 7290171 -155309759 + AT_rich Low_complexity Low_complexity 1 25 0 954 201 113 25 chrX 7290193 7290462 -155309468 + Charlie5 DNA MER1_type 2269 2572 -52 2536 77 0 0 chrX 7290462 7290773 -155309157 + AluSx SINE Alu 1 311 -1 954 201 113 25 chrX 7290773 7290822 -155309108 + Charlie5 DNA MER1_type 2572 2615 -9 1812 174 24 0 chrX 7291044 7291338 -155308592 + AluJo SINE Alu 1 301 -11 280 275 42 28 chrX 7291412 7291554 -155308376 - MIR SINE MIR -78 184 41 217 236 194 14 chrX 7292729 7292801 -155307129 - L2 LINE L2 -11 3302 3218 757 181 46 69 chrX 7294646 7294862 -155305068 - MER20 DNA MER1_type -8 211 1 2426 71 7 10 chrX 7295152 7295460 -155304470 + AluSx SINE Alu 1 307 -5 237 292 164 33 chrX 7297151 7297480 -155302450 - L2 LINE L2 -91 3222 2851 2346 173 121 22 chrX 7298924 7299214 -155300716 - L1MB3 LINE L1 -3 6180 5920 2180 124 0 7 chrX 7299214 7299389 -155300541 - AluSx SINE Alu -12 300 126 271 44 44 0 chrX 7299389 7299434 -155300496 + (TTTG)n Simple_repeat Simple_repeat 4 50 0 2180 124 0 7 chrX 7299434 7299557 -155300373 - AluSx SINE Alu -186 126 4 2346 173 121 22 chrX 7299557 7299822 -155300108 - L1MB3 LINE L1 -263 5920 5570 650 290 65 0 chrX 7299888 7300102 -155299828 + MER58B DNA MER1_type 1 228 -113 2053 132 0 0 chrX 7300163 7300464 -155299466 + AluJb SINE Alu 1 301 0 180 0 0 0 chrX 7301241 7301261 -155298669 + (TTTTA)n Simple_repeat Simple_repeat 4 23 0 2036 71 0 23 chrX 7302415 7302681 -155297249 + AluSg SINE Alu 1 260 -50 206 346 63 31 chrX 7304514 7304641 -155295289 + MIR SINE MIR 19 149 -113 1030 188 28 5 chrX 7304949 7305162 -155294768 - MER20 DNA MER1_type -1 218 1 2404 103 0 3 chrX 7305293 7305605 -155294325 - AluSx SINE Alu 0 312 2 532 182 153 86 chrX 7305950 7306159 -155293771 + MER58A DNA MER1_type 2 224 0 1253 144 25 0 chrX 7307124 7307325 -155292605 + MER2 DNA MER2_type 1 206 -139 28 61 0 0 chrX 7307325 7307374 -155292556 + AT_rich Low_complexity Low_complexity 1 49 0 1655 122 0 0 chrX 7307404 7307634 -155292296 - AluJb SINE Alu -82 230 1 225 273 0 0 chrX 7307645 7307689 -155292241 + MER2 DNA MER2_type 302 345 0 214 147 59 15 chrX 7307706 7307774 -155292156 + (TA)n Simple_repeat Simple_repeat 2 72 0 1958 253 68 39 chrX 7307790 7307895 -155292035 - L1MEc LINE L1 -4033 2363 2262 1083 144 20 10 chrX 7307895 7308090 -155291840 - L1PA13 LINE L1 0 6163 5967 1958 253 68 39 chrX 7308090 7308975 -155290955 - L1MEc LINE L1 -4134 2262 1345 2065 124 7 10 chrX 7309035 7309341 -155290589 - AluSx SINE Alu -7 305 1 216 362 34 0 chrX 7310952 7311101 -155288829 + MIR SINE MIR 15 168 -94 21 0 0 0 chrX 7311177 7311198 -155288732 + AT_rich Low_complexity Low_complexity 1 21 0 222 281 0 24 chrX 7311198 7311280 -155288650 + MIR SINE MIR 183 262 0 895 119 0 0 chrX 7311292 7311410 -155288520 - FLAM_C SINE Alu -25 118 1 415 265 88 6 chrX 7311711 7311892 -155288038 - MLT1F LTR MaLR -78 464 269 466 145 13 0 chrX 7311969 7312045 -155287885 - MER20 DNA MER1_type -113 106 30 1641 204 105 15 chrX 7312629 7313034 -155286896 + L1MB5 LINE L1 5689 6122 -58 828 123 0 43 chrX 7313034 7313172 -155286758 + FLAM_C SINE Alu 1 132 -1 1641 204 105 15 chrX 7313172 7313236 -155286694 + L1MB5 LINE L1 6122 6179 -1 378 0 0 0 chrX 7313244 7313286 -155286644 + (CAA)n Simple_repeat Simple_repeat 2 43 0 39 60 0 0 chrX 7316672 7316739 -155283191 + AT_rich Low_complexity Low_complexity 1 67 0 2049 110 11 14 chrX 7317368 7317689 -155282241 - AluSx SINE Alu 0 320 1 1270 161 96 45 chrX 7318477 7318812 -155281118 - L1MB7 LINE L1 -287 5897 5546 693 257 6 0 chrX 7319445 7319620 -155280310 - MER58B DNA MER1_type -3 338 163 808 187 91 5 chrX 7319897 7320095 -155279835 + MER20 DNA MER1_type 5 219 0 1631 182 0 33 chrX 7320327 7320634 -155279296 + AluJb SINE Alu 1 297 -15 2111 132 0 10 chrX 7321402 7321713 -155278217 - AluSx SINE Alu 0 312 5 1513 136 4 0 chrX 7321857 7322092 -155277838 - AluJb SINE Alu -16 296 61 203 345 124 48 chrX 7322706 7322851 -155277079 + MIR SINE MIR 20 175 -87 251 327 87 0 chrX 7324714 7324864 -155275066 - MIR SINE MIR -62 200 38 1536 175 0 56 chrX 7326546 7326849 -155273081 - AluJo SINE Alu -26 286 1 412 221 176 22 chrX 7326961 7327097 -155272833 + MER20 DNA MER1_type 1 157 -62 334 149 68 54 chrX 7327207 7327281 -155272649 + MIR3 SINE MIR 109 183 -25 1853 125 6 55 chrX 7327775 7328103 -155271827 - AluJb SINE Alu 0 312 1 1290 203 32 7 chrX 7328656 7328937 -155270993 - MLT1E1 LTR MaLR 0 654 367 353 173 10 175 chrX 7328984 7329104 -155270826 - MLT1E LTR MaLR -430 163 51 225 298 27 98 chrX 7329219 7329333 -155270597 + MARNA DNA Mariner 326 447 -139 1644 170 26 7 chrX 7329333 7329639 -155270291 + AluJb SINE Alu 1 312 0 2269 69 0 0 chrX 7329643 7329933 -155269997 + AluSc SINE Alu 1 290 -19 225 298 27 98 chrX 7329933 7330038 -155269892 + MARNA DNA Mariner 450 534 -52 1226 229 93 34 chrX 7331915 7332356 -155267574 - MLT1C LTR MaLR 0 467 1 2538 91 37 6 chrX 7334659 7335012 -155264918 + THE1B LTR MaLR 1 364 0 1552 122 3 107 chrX 7335558 7335885 -155264045 - AluJb SINE Alu -19 293 1 1839 235 26 22 chrX 7335960 7336458 -155263472 - L1ME1 LINE L1 -101 6065 5566 1213 151 31 5 chrX 7337595 7337905 -155262025 + MLT1A1 LTR MaLR 1 365 0 1564 147 90 4 chrX 7338030 7338296 -155261634 + AluJb SINE Alu 7 295 -17 2166 174 10 17 chrX 7339054 7339469 -155260461 + L1MB3 LINE L1 5730 6141 -42 1266 174 8 28 chrX 7339469 7339722 -155260208 + AluJo SINE Alu 42 289 -23 299 115 0 0 chrX 7339728 7339780 -155260150 + L1MB3 LINE L1 6125 6176 -7 891 287 60 51 chrX 7340037 7340235 -155259695 + L1MD2 LINE L1 5710 5905 -454 2147 116 0 6 chrX 7340235 7340546 -155259384 + AluSx SINE Alu 1 309 -3 891 287 60 51 chrX 7340546 7340779 -155259151 + L1MD2 LINE L1 5905 6145 -214 590 264 122 10 chrX 7341549 7341746 -155258184 - MER20 DNA MER1_type 0 219 1 489 205 26 43 chrX 7342096 7342213 -155257717 + LTR8A LTR ERV1 1 115 -612 12755 161 66 52 chrX 7342213 7342248 -155257682 + HUERS-P1 LTR ERV1 1978 2011 -4587 450 0 0 0 chrX 7342248 7342298 -155257632 + (TA)n Simple_repeat Simple_repeat 1 50 0 12755 161 66 52 chrX 7342298 7343789 -155256141 + HUERS-P1 LTR ERV1 2011 3481 -3117 1758 62 9 0 chrX 7343789 7344016 -155255914 + AluY SINE Alu 50 278 -33 12755 161 66 52 chrX 7344016 7345981 -155253949 + HUERS-P1 LTR ERV1 3481 6257 -341 784 176 171 40 chrX 7346024 7346223 -155253707 + HUERS-P1 LTR ERV1 6050 6274 -57 1528 220 36 3 chrX 7346301 7346610 -155253320 + HUERS-P1 LTR ERV1 5945 6263 0 2526 178 78 68 chrX 7346610 7347330 -155252600 + LTR8A LTR ERV1 1 727 0 1504 186 43 25 chrX 7347845 7348168 -155251762 - MER77 LTR ERV1 0 605 277 2148 108 78 9 chrX 7349607 7349941 -155249989 - MLT1A1 LTR MaLR 0 365 9 595 299 54 9 chrX 7350108 7350332 -155249598 - MIR SINE MIR 0 262 29 300 261 67 59 chrX 7350332 7350451 -155249479 + L1MCa LINE L1 1937 2056 -4370 330 234 0 0 chrX 7350469 7350533 -155249397 - MER2 DNA MER2_type 0 345 282 1989 111 7 10 chrX 7350540 7350828 -155249102 + AluSx SINE Alu 1 287 -25 21 0 0 0 chrX 7350902 7350923 -155249007 + AT_rich Low_complexity Low_complexity 1 21 0 488 143 0 0 chrX 7350925 7351002 -155248928 - MER83B LTR ERV1 -76 302 226 1588 174 0 14 chrX 7351035 7351322 -155248608 - AluJb SINE Alu -29 283 1 1527 187 21 3 chrX 7351324 7351439 -155248491 - AluJb SINE Alu -16 296 184 216 0 0 0 chrX 7351439 7351463 -155248467 + (C)n Simple_repeat Simple_repeat 1 24 0 1527 187 21 3 chrX 7351463 7351636 -155248294 - AluJb SINE Alu -128 184 3 2251 89 0 22 chrX 7352360 7352674 -155247256 + AluSq SINE Alu 1 307 -6 324 230 82 59 chrX 7354424 7354559 -155245371 + MER74B LTR ERVL 472 609 -13 268 333 0 0 chrX 7354593 7354671 -155245259 - MIR3 SINE MIR -12 196 119 336 263 0 0 chrX 7354921 7354997 -155244933 + MER2 DNA MER2_type 270 345 0 1180 227 0 0 chrX 7355009 7355229 -155244701 - MER58A DNA MER1_type -4 220 1 875 167 48 12 chrX 7355999 7356167 -155243763 + MER20 DNA MER1_type 46 219 0 1844 196 37 0 chrX 7356661 7357013 -155242917 - MLT1A1 LTR MaLR 0 365 1 289 275 111 0 chrX 7357200 7357344 -155242586 - MIR3 SINE MIR -62 146 4 237 352 101 25 chrX 7358083 7358242 -155241688 + MIR SINE MIR 17 187 -75 1606 168 9 37 chrX 7361061 7361382 -155238548 + AluJb SINE Alu 1 312 0 822 174 0 0 chrX 7362056 7362194 -155237736 - AluJb SINE Alu -19 293 156 1813 121 49 39 chrX 7362471 7362778 -155237152 - AluJo SINE Alu -2 310 1 1600 185 3 3 chrX 7363175 7363467 -155236463 + AluJo SINE Alu 2 293 -19 853 228 20 18 chrX 7364236 7364458 -155235472 - MER20 DNA MER1_type 0 219 7 204 182 0 0 chrX 7364898 7364942 -155234988 + (CGG)n Simple_repeat Simple_repeat 3 46 0 426 272 0 0 chrX 7365705 7365867 -155234063 + (TG)n Simple_repeat Simple_repeat 1 162 0 469 248 46 0 chrX 7366902 7367011 -155232919 - MER58A DNA MER1_type 0 224 111 2097 178 27 5 chrX 7367017 7367393 -155232537 - MLT1B LTR MaLR -6 384 1 482 211 26 26 chrX 7367392 7367506 -155232424 - MER58A DNA MER1_type 0 116 3 * 1443 173 24 0 chrX 7367521 7367658 -155232272 - AluJo SINE Alu -46 266 119 207 0 0 0 chrX 7367658 7367681 -155232249 + (TTG)n Simple_repeat Simple_repeat 2 24 0 1443 173 24 0 chrX 7367681 7367797 -155232133 - AluJo SINE Alu -193 119 7 2255 95 3 3 chrX 7367912 7368218 -155231712 + AluSx SINE Alu 1 306 -6 2141 108 0 0 chrX 7369169 7369466 -155230464 - AluSx SINE Alu -15 297 1 1255 121 5 33 chrX 7371144 7371395 -155228535 + AluSq SINE Alu 74 318 0 1943 82 56 0 chrX 7371450 7371757 -155228173 + AluSp SINE Alu 1 322 0 1181 175 9 31 chrX 7371822 7372045 -155227885 + MER58A DNA MER1_type 7 224 0 459 276 85 35 chrX 7372317 7372516 -155227414 - MIR SINE MIR -21 241 33 964 62 86 0 chrX 7373604 7373732 -155226198 - MER85 DNA T2_type 0 139 1 814 227 75 14 chrX 7373748 7374026 -155225904 + MER33 DNA MER1_type 30 324 0 180 0 0 0 chrX 7374197 7374217 -155225713 + (TTG)n Simple_repeat Simple_repeat 2 21 0 1859 154 3 0 chrX 7374248 7374534 -155225396 + AluJo SINE Alu 1 287 -25 1790 176 4 4 chrX 7374560 7374838 -155225092 + AluJo SINE Alu 1 278 -34 2556 219 44 4 chrX 7375053 7375593 -155224337 - MER68 LTR ERV1 0 562 1 2066 116 0 0 chrX 7375737 7376005 -155223925 - AluSx SINE Alu -10 302 35 269 136 0 0 chrX 7376741 7376785 -155223145 - L1MB5 LINE L1 -112 6062 6019 769 265 95 14 chrX 7377571 7377865 -155222065 + L1MD2 LINE L1 5804 6121 -238 514 270 20 7 chrX 7377884 7378032 -155221898 + L1MD3 LINE L1 7832 7981 -14 1139 99 14 94 chrX 7378227 7378440 -155221490 + MER30 DNA MER1_type 1 196 -34 2007 147 0 19 chrX 7378912 7379219 -155220711 + AluJo SINE Alu 1 301 -11 1190 133 12 0 chrX 7379219 7379384 -155220546 + AluJo/FRAM SINE Alu 138 304 -8 600 259 7 0 chrX 7379386 7379529 -155220401 - MER82 DNA MER2_type -485 168 25 291 211 0 0 chrX 7379988 7380083 -155219847 + GA-rich Low_complexity Low_complexity 5 99 0 181 279 174 0 chrX 7380728 7380814 -155219116 + MER5B DNA MER1_type 14 114 -64 1579 179 47 24 chrX 7381361 7381657 -155218273 + AluJo SINE Alu 1 303 -9 595 294 93 57 chrX 7382086 7382231 -155217699 + L1M4 LINE L1 1146 1284 -5528 1480 170 129 15 chrX 7382231 7382502 -155217428 + AluJo SINE Alu 1 302 0 595 294 93 57 chrX 7382502 7382560 -155217370 + L1M4 LINE L1 1284 1338 -5474 1810 145 134 31 chrX 7382560 7382947 -155216983 - MSTA LTR MaLR 0 428 2 595 294 93 57 chrX 7382947 7383376 -155216554 + L1M4 LINE L1 1338 1949 -4863 1676 155 50 0 chrX 7385358 7385636 -155214294 + AluJb SINE Alu 1 292 -20 2116 119 26 19 chrX 7386701 7387011 -155212919 + AluJb SINE Alu 1 312 0 881 160 0 0 chrX 7387508 7387639 -155212291 - FLAM_C SINE Alu -2 131 1 1959 125 27 27 chrX 7387818 7388115 -155211815 + AluJo SINE Alu 1 297 -15 2377 106 3 0 chrX 7389084 7389395 -155210535 - AluSx SINE Alu 0 312 1 2313 108 0 3 chrX 7390180 7390486 -155209444 - AluSx SINE Alu -7 305 1 930 103 8 0 chrX 7390746 7390872 -155209058 - FLAM_C SINE Alu -16 127 1 778 286 128 10 chrX 7391104 7391517 -155208413 - LTR16B LTR ERVL 0 464 3 396 187 18 10 chrX 7391985 7392060 -155207870 + MER20 DNA MER1_type 3 57 -162 1871 198 15 0 chrX 7392060 7392403 -155207527 - MER7A DNA MER2_type 0 346 1 396 187 18 10 chrX 7392403 7392424 -155207506 + MER20 DNA MER1_type 57 76 -143 361 241 12 0 chrX 7392834 7392917 -155207013 - MER58A DNA MER1_type -22 85 2 192 77 0 0 chrX 7393836 7393862 -155206068 + (TC)n Simple_repeat Simple_repeat 2 27 0 27 62 0 0 chrX 7394009 7394057 -155205873 + AT_rich Low_complexity Low_complexity 1 48 0 1139 144 78 6 chrX 7398342 7398522 -155201408 + AluJb SINE Alu 89 281 -31 1944 168 3 0 chrX 7398527 7398831 -155201099 - AluSx SINE Alu -7 305 1 236 263 178 33 chrX 7398967 7399119 -155200811 + L2 LINE L2 1527 1700 -1614 753 256 80 75 chrX 7399415 7399951 -155199979 - LTR67 LTR ERVL -8 549 11 8029 109 47 6 chrX 7400344 7401586 -155198344 + HSMAR2 DNA Mariner 9 1301 -1 1479 190 15 0 chrX 7401841 7402110 -155197820 + Tigger3(Golem) DNA MER2_type 2766 3038 0 225 0 0 0 chrX 7402739 7402764 -155197166 + (A)n Simple_repeat Simple_repeat 1 25 0 1584 197 21 58 chrX 7403750 7404333 -155195597 + LTR27 LTR ERV1 1 636 0 876 272 130 25 chrX 7404596 7404997 -155194933 + L2 LINE L2 2854 3296 -17 1536 171 45 31 chrX 7405293 7405580 -155194350 + AluJo SINE Alu 1 291 -21 2108 148 26 0 chrX 7406631 7406970 -155192960 + MER7A DNA MER2_type 1 346 0 1218 128 137 10 chrX 7407934 7408138 -155191792 + AluSx SINE Alu 64 293 -19 2276 117 3 13 chrX 7409339 7409648 -155190282 + AluSx SINE Alu 1 306 -6 2400 106 6 0 chrX 7410558 7410869 -155189061 + AluSq SINE Alu 1 313 0 743 183 0 0 chrX 7413221 7413347 -155186583 - FLAM_A SINE Alu -7 126 1 274 326 39 31 chrX 7413643 7413772 -155186158 + L2 LINE L2 3141 3270 -2 1700 158 12 79 chrX 7413777 7414106 -155185824 + AluJo SINE Alu 1 307 -5 1534 202 92 0 chrX 7414108 7414479 -155185451 + L1MB7 LINE L1 5780 6184 0 1591 176 49 14 chrX 7414486 7414770 -155185160 + AluJb SINE Alu 1 294 -18 2039 128 6 3 chrX 7415370 7415682 -155184248 - AluSq SINE Alu 0 313 1 712 106 0 0 chrX 7415682 7415776 -155184154 - AluSq/x SINE Alu -178 134 41 716 212 35 6 chrX 7416005 7416175 -155183755 + MER20 DNA MER1_type 1 175 -44 194 128 26 0 chrX 7416607 7416646 -155183284 + (TTGG)n Simple_repeat Simple_repeat 2 41 0 191 242 19 25 chrX 7416705 7416862 -155183068 + GA-rich Low_complexity Low_complexity 2 157 0 207 100 0 0 chrX 7417500 7417530 -155182400 + (T)n Simple_repeat Simple_repeat 1 30 0 959 162 14 0 chrX 7417893 7418041 -155181889 + FRAM SINE Alu 1 146 -30 180 77 0 0 chrX 7418048 7418074 -155181856 + (TTAA)n Simple_repeat Simple_repeat 1 26 0 2051 136 3 23 chrX 7418363 7418671 -155181259 + AluJo SINE Alu 1 302 -10 1437 143 95 0 chrX 7419040 7419271 -155180659 - AluJo SINE Alu -25 287 35 2170 113 0 0 chrX 7419583 7419858 -155180072 + AluSx SINE Alu 1 275 -37 894 125 0 56 chrX 7419858 7420002 -155179928 + AluJb SINE Alu 172 307 -5 731 132 6 93 chrX 7420623 7420805 -155179125 - L1MD3 LINE L1 -8 7987 7822 2087 132 20 0 chrX 7420814 7421110 -155178820 + AluSx SINE Alu 1 302 -10 2293 97 3 0 chrX 7421186 7421476 -155178454 + AluSq SINE Alu 6 296 -17 503 193 67 8 chrX 7421519 7421638 -155178292 - L1ME4a LINE L1 -34 6087 5962 2298 87 0 13 chrX 7421729 7422028 -155177902 + AluSx SINE Alu 2 296 -16 261 0 0 0 chrX 7423768 7423797 -155176133 + (A)n Simple_repeat Simple_repeat 1 29 0 200 182 0 0 chrX 7423936 7423969 -155175961 + GA-rich Low_complexity Low_complexity 5 37 0 1026 206 14 14 chrX 7424455 7424664 -155175266 - MER58A DNA MER1_type -15 209 1 857 160 0 0 chrX 7425590 7425740 -155174190 - L1MB5 LINE L1 -8 6166 6017 1617 120 70 94 chrX 7425744 7426184 -155173746 + THE1C LTR MaLR 1 375 0 1092 157 10 5 chrX 7426188 7426385 -155173545 - L1MB5 LINE L1 -161 6013 5816 736 173 8 0 chrX 7426390 7426517 -155173413 - FLAM_C SINE Alu -11 132 5 1695 156 15 7 chrX 7426548 7426817 -155173113 - AluJb SINE Alu -34 278 8 876 171 56 60 chrX 7426825 7426977 -155172953 - L1MB5 LINE L1 -348 5826 5674 1961 152 7 0 chrX 7426977 7427266 -155172664 - AluJo SINE Alu -21 291 1 876 171 56 60 chrX 7427266 7427329 -155172601 - L1MB5 LINE L1 -500 5674 5612 2284 106 3 0 chrX 7427329 7427621 -155172309 - AluSx SINE Alu -19 293 1 392 141 14 28 chrX 7427621 7427692 -155172238 + MLT1A1 LTR MaLR 295 364 -1 550 122 41 10 chrX 7428272 7428370 -155171560 + L1MB7 LINE L1 5816 5916 -268 695 214 6 40 chrX 7428378 7428551 -155171379 + L1MB7 LINE L1 6002 6168 -16 1707 171 24 20 chrX 7428833 7429125 -155170805 - AluJo SINE Alu -18 294 2 1220 226 40 17 chrX 7429161 7429457 -155170473 + MLT1D LTR MaLR 1 303 -202 1044 172 0 6 chrX 7429457 7429631 -155170299 + FRAM SINE Alu 1 172 -4 2142 105 54 0 chrX 7429852 7430146 -155169784 + AluSg SINE Alu 1 310 0 285 315 35 14 chrX 7431751 7431894 -155168036 + MLT1J LTR MaLR 11 156 -355 2187 102 0 84 chrX 7431894 7432229 -155167701 + AluSq SINE Alu 1 307 -6 910 243 65 81 chrX 7432266 7432637 -155167293 + MLT1J LTR MaLR 147 511 0 2078 135 20 0 chrX 7483099 7483395 -155116535 - AluJb SINE Alu -2 310 9 2212 111 0 16 chrX 7483502 7483817 -155116113 + AluSq SINE Alu 1 310 -3 1905 165 0 13 chrX 7485840 7486156 -155113774 + AluJb SINE Alu 1 312 0 261 306 89 6 chrX 7486376 7486533 -155113397 + MER5B DNA MER1_type 1 170 -8 1157 146 6 6 chrX 7486569 7486747 -155113183 - AluJb SINE Alu 0 312 135 379 260 0 0 chrX 7487248 7487344 -155112586 + MER5A DNA MER1_type 1 96 -93 1822 155 52 14 chrX 7487359 7487708 -155112222 - THE1C LTR MaLR -13 362 1 1517 171 59 39 chrX 7487817 7488122 -155111808 - AluJo SINE Alu -1 311 1 2318 123 0 0 chrX 7488370 7488680 -155111250 - AluSx SINE Alu 0 312 3 266 0 29 0 chrX 7489303 7489337 -155110593 + (TTTTTA)n Simple_repeat Simple_repeat 2 36 0 530 213 16 8 chrX 7489430 7489552 -155110378 + MLT1A2 LTR MaLR 200 322 -52 254 111 0 0 chrX 7489559 7489595 -155110335 - Alu SINE Alu -263 37 2 307 221 0 0 chrX 7489612 7489680 -155110250 - L1MB3 LINE L1 -178 6005 5938 2423 62 0 10 chrX 7489954 7490245 -155109685 - AluSp SINE Alu -2 311 24 640 194 148 46 chrX 7490526 7490700 -155109230 - MER20 DNA MER1_type -3 216 18 1972 128 54 20 chrX 7490700 7490749 -155109181 - MLT1A1 LTR MaLR 0 365 319 2507 74 3 0 chrX 7490749 7491048 -155108882 + AluSp SINE Alu 10 309 -4 1972 128 54 20 chrX 7491048 7491351 -155108579 - MLT1A1 LTR MaLR -46 319 1 640 194 148 46 chrX 7491351 7491372 -155108558 - MER20 DNA MER1_type -201 18 1 414 0 0 0 chrX 7492972 7493018 -155106912 + (TG)n Simple_repeat Simple_repeat 1 46 0 362 269 59 25 chrX 7493063 7493182 -155106748 - MLT1K LTR MaLR -6 582 460 812 193 56 0 chrX 7493368 7493529 -155106401 + MER20 DNA MER1_type 2 171 -48 201 39 0 0 chrX 7493995 7494021 -155105909 + (TTTA)n Simple_repeat Simple_repeat 2 27 0 304 303 81 10 chrX 7494069 7494168 -155105762 - AluJb SINE Alu -21 281 176 807 145 105 23 chrX 7495096 7495268 -155104662 - AluJo SINE Alu -6 306 121 182 341 35 0 chrX 7495571 7495656 -155104274 + MIR SINE MIR 59 146 -116 246 154 31 15 chrX 7495853 7495918 -155104012 + CT-rich Low_complexity Low_complexity 1 66 0 1312 267 23 32 chrX 7495934 7495963 -155103967 - L1MB7 LINE L1 -11 6173 6145 748 181 0 0 chrX 7495963 7496096 -155103834 - AluJo SINE Alu -169 133 1 1312 267 23 32 chrX 7496096 7496497 -155103433 - L1MB7 LINE L1 -39 6145 5747 2666 53 0 0 chrX 7497427 7497728 -155102202 - AluY SINE Alu -10 301 1 548 203 108 0 chrX 7498212 7498360 -155101570 + L1MB8 LINE L1 5900 6063 -115 600 301 25 20 chrX 7498850 7499107 -155100823 - L1ME1 LINE L1 -165 6001 5781 1714 153 62 7 chrX 7499649 7499937 -155099993 - AluJb SINE Alu -8 304 1 341 273 32 71 chrX 7500090 7500244 -155099686 + HAL1b LINE L1 1200 1347 -1 2183 135 0 3 chrX 7500313 7500624 -155099306 - AluSq SINE Alu -3 310 1 1841 132 10 65 chrX 7501128 7501438 -155098492 + AluJo SINE Alu 1 293 -19 25 0 0 0 chrX 7501651 7501676 -155098254 + AT_rich Low_complexity Low_complexity 1 25 0 266 204 0 0 chrX 7501681 7501725 -155098205 - AluJ/monomer SINE Alu -258 44 1 1821 146 31 121 chrX 7502466 7502767 -155097163 - L1MD3 LINE L1 0 7995 7669 2011 133 0 17 chrX 7502767 7503069 -155096861 - AluSx SINE Alu -15 297 1 1821 146 31 121 chrX 7503069 7503282 -155096648 - L1MD3 LINE L1 -326 7669 7310 23 0 0 44 chrX 7503581 7503598 -155096332 + AT_rich Low_complexity Low_complexity 1 17 -26 1947 155 7 7 chrX 7503598 7503895 -155096035 + AluJb SINE Alu 1 297 -15 2323 103 0 7 chrX 7503899 7504200 -155095730 + AluSq SINE Alu 1 299 -14 23 0 0 44 chrX 7504200 7504222 -155095708 + AT_rich Low_complexity Low_complexity 20 43 0 674 262 52 0 chrX 7504367 7504577 -155095353 - MER58A DNA MER1_type -2 222 2 922 237 17 58 chrX 7505178 7505473 -155094457 - L1ME3A LINE L1 -83 6087 5805 1559 153 0 12 chrX 7505481 7505656 -155094274 - AluJo SINE Alu -4 308 135 2321 104 0 3 chrX 7505656 7505964 -155093966 - AluY SINE Alu -4 307 1 1559 153 0 12 chrX 7505964 7506037 -155093893 - AluJo SINE Alu -177 135 63 3009 9 0 0 chrX 7507592 7507910 -155092020 + AluYb8 SINE Alu 1 318 0 216 319 75 43 chrX 7507988 7508082 -155091848 + MIR SINE MIR 22 118 -90 1988 142 26 3 chrX 7509935 7510237 -155089693 + AluJb SINE Alu 1 309 -3 1768 186 0 0 chrX 7510397 7510687 -155089243 - AluJo SINE Alu -22 290 1 703 188 106 69 chrX 7510691 7510825 -155089105 - L1MD1 LINE L1 -14 6228 6081 1825 135 3 53 chrX 7510825 7511128 -155088802 - AluJb SINE Alu -8 304 17 703 188 106 69 chrX 7511128 7511211 -155088719 - L1MD1 LINE L1 -161 6081 6003 366 115 0 33 chrX 7511882 7511943 -155087987 - AluJ/FLAM SINE Alu -227 75 17 294 203 16 0 chrX 7511943 7512007 -155087923 - L1MD1 LINE L1 -146 6096 6032 248 303 101 0 chrX 7512124 7512213 -155087717 - MIR3 SINE MIR -15 193 96 1607 197 87 32 chrX 7512736 7513172 -155086758 - MLT1C LTR MaLR -7 460 1 293 269 37 9 chrX 7513189 7513297 -155086633 - L1ME3A LINE L1 -14 6156 6046 1516 54 19 0 chrX 7514480 7514685 -155085245 + L1PA7 LINE L1 5946 6154 0 225 0 0 0 chrX 7514925 7514950 -155084980 + (TAGA)n Simple_repeat Simple_repeat 2 26 0 22 0 0 0 chrX 7515405 7515427 -155084503 + AT_rich Low_complexity Low_complexity 1 22 0 1982 132 0 35 chrX 7516745 7517063 -155082867 - AluJb SINE Alu -1 311 5 2391 89 0 10 chrX 7517898 7518200 -155081730 + AluSq SINE Alu 1 299 -14 2231 100 0 4 chrX 7518310 7518590 -155081340 + AluSx SINE Alu 1 279 -33 1072 197 5 5 chrX 7519423 7519636 -155080294 + MER20 DNA MER1_type 3 215 -4 290 271 25 42 chrX 7519654 7519772 -155080158 - L1ME LINE L1 -396 5774 5659 2346 107 0 0 chrX 7519811 7520102 -155079828 - AluSx SINE Alu -21 291 1 1618 213 74 12 chrX 7520143 7520547 -155079383 + L1MB2 LINE L1 5727 6155 -16 1582 208 0 10 chrX 7520554 7520847 -155079083 - AluJo SINE Alu -21 291 2 240 213 27 0 chrX 7521309 7521379 -155078551 - LTR41 LTR ERVL 0 795 720 407 259 43 0 chrX 7521418 7521534 -155078396 + MER58B DNA MER1_type 220 340 -1 502 286 164 64 chrX 7521586 7522208 -155077722 - LTR41 LTR ERVL -87 686 3 694 182 23 8 chrX 7523006 7523138 -155076792 - FAM SINE Alu -20 165 32 1858 124 0 72 chrX 7523778 7523915 -155076015 + AluJo SINE Alu 14 120 -192 2623 7 0 24 chrX 7523915 7524239 -155075691 + AluYa5 SINE Alu 1 317 0 1858 124 0 72 chrX 7524239 7524407 -155075523 + AluJo SINE Alu 120 298 -14 2524 79 0 0 chrX 7524933 7525238 -155074692 - AluY SINE Alu -6 305 1 216 0 0 0 chrX 7525463 7525487 -155074443 + (T)n Simple_repeat Simple_repeat 1 24 0 2301 117 0 0 chrX 7527585 7527922 -155072008 - AluSg SINE Alu 0 337 1 1519 158 3 110 chrX 7527922 7528258 -155071672 - AluJb SINE Alu -12 300 1 2271 116 0 19 chrX 7528321 7528639 -155071291 - AluSx SINE Alu 0 312 1 2438 149 15 22 chrX 7528670 7529126 -155070804 - L1MB3 LINE L1 -3 6180 5728 1610 181 0 28 chrX 7529328 7529610 -155070320 + AluJb SINE Alu 15 288 -24 482 236 192 33 chrX 7531389 7531571 -155068359 - MER58A DNA MER1_type -5 219 9 2379 88 3 7 chrX 7531661 7531967 -155067963 + AluSg SINE Alu 1 305 -5 782 192 85 6 chrX 7532090 7532267 -155067663 + L1MB7 LINE L1 5466 5656 -524 1862 187 63 0 chrX 7532272 7532668 -155067262 + L1MB7 LINE L1 5755 6175 -9 687 111 10 0 chrX 7533981 7534080 -155065850 - HY3 scRNA scRNA -1 100 1 2055 146 0 31 chrX 7534167 7534489 -155065441 + AluJb SINE Alu 1 312 0 433 261 213 37 chrX 7535011 7535279 -155064651 - L1MB3 LINE L1 -2164 5644 5330 198 271 153 76 chrX 7535315 7535459 -155064471 + L3 LINE CR1 1163 1317 -260 408 111 136 0 chrX 7535632 7535713 -155064217 - MER21A LTR ERV1 -1 930 839 333 211 40 47 chrX 7535803 7535943 -155063987 - L1MB8 LINE L1 -122 6061 5920 868 163 88 0 chrX 7536186 7536333 -155063597 - FRAM SINE Alu -6 160 1 21 36 0 0 chrX 7538379 7538407 -155061523 + AT_rich Low_complexity Low_complexity 1 28 0 204 200 0 0 chrX 7538413 7538458 -155061472 + GA-rich Low_complexity Low_complexity 4 48 0 1048 168 0 0 chrX 7538460 7538615 -155061315 - FAM SINE Alu -30 155 1 2037 111 21 0 chrX 7538622 7538939 -155060991 - AluSx SINE Alu 0 323 1 318 259 95 43 chrX 7542847 7542963 -155056967 - MER5A DNA MER1_type -67 122 1 291 54 0 0 chrX 7543731 7543768 -155056162 + (T)n Simple_repeat Simple_repeat 1 37 0 672 167 0 0 chrX 7543881 7543983 -155055947 - FRAM SINE Alu -13 163 62 22 0 0 0 chrX 7544053 7544075 -155055855 + AT_rich Low_complexity Low_complexity 1 22 0 945 135 0 0 chrX 7544306 7544432 -155055498 + FLAM_C SINE Alu 1 126 -17 25 0 0 0 chrX 7544437 7544462 -155055468 + AT_rich Low_complexity Low_complexity 1 25 0 1972 138 17 3 chrX 7545051 7545347 -155054583 + AluJo SINE Alu 1 300 -12 2042 155 52 8 chrX 7545829 7546229 -155053701 - L1MB2 LINE L1 -6 6165 5748 952 141 7 0 chrX 7546743 7546878 -155053052 + AluJo SINE Alu 1 136 -176 613 228 22 0 chrX 7547254 7547390 -155052540 + MER3 DNA MER1_type 23 161 -48 1788 176 0 0 chrX 7547832 7548122 -155051808 - AluJo SINE Alu -22 290 1 2316 124 0 0 chrX 7549463 7549770 -155050160 + AluSx SINE Alu 1 307 -5 213 219 0 0 chrX 7551011 7551084 -155048846 + (TG)n Simple_repeat Simple_repeat 2 74 0 442 232 6 11 chrX 7551097 7551278 -155048652 + (TG)n Simple_repeat Simple_repeat 1 180 0 1916 153 29 13 chrX 7551356 7551663 -155048267 + AluJo SINE Alu 1 312 0 1651 154 0 84 chrX 7552474 7552807 -155047123 - AluJb SINE Alu 0 307 1 922 213 63 29 chrX 7552807 7553046 -155046884 - MER58B DNA MER1_type -21 320 74 2393 86 7 7 chrX 7553048 7553352 -155046578 + AluSx SINE Alu 1 304 -8 970 178 205 50 chrX 7556821 7557079 -155042851 + AluJo SINE Alu 5 302 0 1964 125 0 58 chrX 7558341 7558653 -155041277 + AluJb SINE Alu 2 295 -17 1898 177 21 23 chrX 7560352 7560736 -155039194 - MLT1B LTR MaLR -7 383 1 295 331 81 0 chrX 7561173 7561297 -155038633 + L2 LINE L2 3138 3271 -1 221 255 0 0 chrX 7561298 7561345 -155038585 + (TGGA)n Simple_repeat Simple_repeat 2 48 0 755 178 0 6 chrX 7561385 7561565 -155038365 + (TGGA)n Simple_repeat Simple_repeat 1 179 0 203 298 0 0 chrX 7561567 7561614 -155038316 + (TGGG)n Simple_repeat Simple_repeat 1 47 0 522 249 0 0 chrX 7561615 7561788 -155038142 + (TGGA)n Simple_repeat Simple_repeat 2 174 0 317 389 56 5 chrX 7561823 7562021 -155037909 - L1 LINE L1 -2317 3829 3622 2044 148 3 6 chrX 7562912 7563223 -155036707 - AluJb SINE Alu -2 310 1 863 170 0 0 chrX 7563616 7563751 -155036179 + AluJo SINE Alu 1 135 -177 1471 158 60 34 chrX 7564263 7564528 -155035402 - AluJb SINE Alu -35 277 6 1297 174 54 8 chrX 7565564 7565823 -155034107 + L1MB7 LINE L1 5895 6165 -19 2387 72 30 7 chrX 7565891 7566196 -155033734 + AluSq SINE Alu 1 312 -1 399 289 35 0 chrX 7566224 7566338 -155033592 - MER58A DNA MER1_type 0 224 107 185 301 0 41 chrX 7567024 7567097 -155032833 + L3 LINE CR1 1321 1390 -187 998 242 9 22 chrX 7567106 7567329 -155032601 + MER58A DNA MER1_type 1 220 -4 1821 130 52 0 chrX 7568053 7568370 -155031560 + AluJo SINE Alu 1 331 0 4240 192 50 34 chrX 7568381 7569146 -155030784 + L1MC3 LINE L1 6701 7489 -296 2103 186 8 14 chrX 7569146 7569512 -155030418 - MLT1A1 LTR MaLR 0 365 2 4240 192 50 34 chrX 7569512 7569798 -155030132 + L1MC3 LINE L1 7489 7769 -16 783 138 0 0 chrX 7569803 7569912 -155030018 + AluJo/FLAM SINE Alu 2 110 -202 2416 88 0 0 chrX 7569913 7570207 -155029723 + AluSx SINE Alu 1 294 -18 907 102 0 16 chrX 7570234 7570362 -155029568 - FLAM_C SINE Alu -17 126 1 206 362 101 11 chrX 7570531 7570719 -155029211 + MIR SINE MIR 20 224 -38 1005 178 6 0 chrX 7571323 7571486 -155028444 + AluJo SINE Alu 122 285 -27 405 0 0 0 chrX 7571486 7571531 -155028399 + (CA)n Simple_repeat Simple_repeat 2 46 0 477 0 0 0 chrX 7571577 7571630 -155028300 + (CA)n Simple_repeat Simple_repeat 2 54 0 206 220 20 0 chrX 7573417 7573467 -155026463 + C-rich Low_complexity Low_complexity 3 53 0 247 329 24 0 chrX 7574425 7574507 -155025423 + MIR3 SINE MIR 84 167 -41 25 0 0 0 chrX 7574507 7574532 -155025398 + AT_rich Low_complexity Low_complexity 1 25 0 369 270 191 15 chrX 7575495 7575699 -155024231 - L1ME4a LINE L1 -18 6103 5864 512 305 118 40 chrX 7575748 7576122 -155023808 - L1ME4a LINE L1 -370 5751 5349 2257 94 0 14 chrX 7576881 7577201 -155022729 - AluSg SINE Alu 0 316 1 1250 192 64 91 chrX 7577659 7577865 -155022065 - MLT1A1 LTR MaLR 0 365 172 1789 144 3 34 chrX 7577865 7578157 -155021773 - AluJo SINE Alu -18 294 12 1250 192 64 91 chrX 7578157 7578325 -155021605 - MLT1A1 LTR MaLR -193 172 1 200 200 18 0 chrX 7578397 7578452 -155021478 + CT-rich Low_complexity Low_complexity 4 59 0 264 300 38 0 chrX 7578453 7578533 -155021397 - L2 LINE L2 -5 3267 3185 2428 95 0 0 chrX 7578703 7579008 -155020922 - AluSc SINE Alu -4 305 1 1724 188 114 10 chrX 7580256 7580661 -155019269 - MLT1F1 LTR MaLR 0 567 121 2487 203 52 29 chrX 7580663 7581060 -155018870 - L1MA10 LINE L1 -2 6332 5936 447 289 21 46 chrX 7581060 7581299 -155018631 - L1PA14 LINE L1 -238 5923 5691 287 255 149 11 chrX 7581328 7581422 -155018508 - MLT1F1 LTR MaLR -437 130 24 1556 214 0 16 chrX 7581428 7581737 -155018193 - AluJo SINE Alu -8 304 1 445 288 75 29 chrX 7581780 7582058 -155017872 - L1ME2 LINE L1 -133 6031 5741 341 261 0 0 chrX 7582270 7582358 -155017572 - MER58A DNA MER1_type -19 88 1 1837 169 7 0 chrX 7583736 7584032 -155015898 - AluJo SINE Alu -12 300 3 1677 160 53 53 chrX 7584034 7584334 -155015596 - AluJo SINE Alu -12 300 1 736 217 0 0 chrX 7585669 7585807 -155014123 + Tigger4(Zombi) DNA MER2_type 1 138 -2593 * 2997 169 11 4 chrX 7585801 7586323 -155013607 + Tigger4(Zombi) DNA MER2_type 2206 2731 0 2027 128 3 29 chrX 7586453 7586765 -155013165 + AluJb SINE Alu 9 312 0 256 293 30 0 chrX 7587900 7587999 -155011931 + (CA)n Simple_repeat Simple_repeat 1 102 0 291 217 40 0 chrX 7588010 7588162 -155011768 + (CA)n Simple_repeat Simple_repeat 1 158 0 424 301 23 11 chrX 7588216 7588392 -155011538 + (CA)n Simple_repeat Simple_repeat 2 179 0 2798 74 8 0 chrX 7589120 7589471 -155010459 + THE1A LTR MaLR 1 354 -1 2011 136 33 0 chrX 7589613 7589915 -155010015 + AluJb SINE Alu 1 312 0 2370 91 0 0 chrX 7590111 7590421 -155009509 - AluSx SINE Alu 0 310 1 873 93 0 0 chrX 7590638 7590745 -155009185 + AluSq/x SINE Alu 29 135 -178 1637 166 22 4 chrX 7590745 7591016 -155008914 + AluJo SINE Alu 1 276 -36 200 119 0 24 chrX 7591274 7591316 -155008614 + (TG)n Simple_repeat Simple_repeat 2 42 0 1683 164 7 20 chrX 7592867 7593159 -155006771 + AluJb SINE Alu 1 288 -24 632 218 36 62 chrX 7593265 7593490 -155006440 + MER20 DNA MER1_type 1 219 0 309 282 0 0 chrX 7593589 7593674 -155006256 - MER3 DNA MER1_type -124 85 1 305 239 0 0 chrX 7593885 7593952 -155005978 - MLT1A1 LTR MaLR 0 365 299 1818 108 68 0 chrX 7594202 7594451 -155005479 - AluSx SINE Alu -46 266 1 293 0 0 26 chrX 7594689 7594727 -155005203 + (TTA)n Simple_repeat Simple_repeat 3 39 0 729 173 0 0 chrX 7594747 7594857 -155005073 - FLAM_C SINE Alu -32 111 2 2191 109 0 45 chrX 7595479 7595790 -155004140 - AluSx SINE Alu -15 297 1 500 231 151 5 chrX 7597359 7597545 -155002385 + MER20 DNA MER1_type 1 213 -6 23 0 0 0 chrX 7597625 7597648 -155002282 + AT_rich Low_complexity Low_complexity 1 23 0 1905 164 0 13 chrX 7597648 7597953 -155001977 + AluJo SINE Alu 1 301 -11 800 163 0 0 chrX 7599009 7599138 -155000792 - AluJb SINE Alu -2 310 182 2144 103 25 0 chrX 7599175 7599456 -155000474 - AluSx SINE Alu -22 290 3 2690 39 0 3 chrX 7601068 7601375 -154998555 + AluY SINE Alu 1 306 -5 3149 157 52 96 chrX 7601604 7602398 -154997532 - MER21A LTR ERV1 -19 912 154 1425 149 5 0 chrX 7602398 7602634 -154997296 + AluJb SINE Alu 76 312 0 699 188 0 0 chrX 7602781 7602898 -154997032 + FAM SINE Alu 58 174 -11 866 240 5 0 chrX 7602913 7603105 -154996825 + L1MB3 LINE L1 5984 6176 -7 2092 95 95 0 chrX 7603278 7603562 -154996368 + AluSx SINE Alu 1 311 -1 2011 136 0 13 chrX 7604462 7604789 -154995141 - AluSx SINE Alu 0 312 1 967 217 5 0 chrX 7607434 7607632 -154992298 + L1ME2 LINE L1 5201 5399 -747 450 255 34 13 chrX 7609219 7609368 -154990562 - MLT1H LTR MaLR -373 176 25 422 260 181 15 chrX 7609424 7609628 -154990302 + MIR SINE MIR 10 247 -15 1651 151 7 11 chrX 7609846 7610118 -154989812 - AluJo SINE Alu -39 273 3 2421 112 0 0 chrX 7610188 7610500 -154989430 - AluSx SINE Alu 0 312 1 1087 264 70 23 chrX 7610594 7610992 -154988938 + L1ME2 LINE L1 5717 6133 -31 332 284 20 93 chrX 7611039 7611243 -154988687 + L1MC5 LINE L1 7726 7914 -47 2165 134 153 5 chrX 7611449 7611822 -154988108 - MSTA LTR MaLR 0 428 1 9097 167 25 1 chrX 7611822 7613421 -154986509 - MSTA-int LTR MaLR 0 1651 15 2449 97 129 5 chrX 7613439 7613820 -154986110 - MSTA LTR MaLR 0 428 1 240 35 0 0 chrX 7614593 7614622 -154985308 + (TG)n Simple_repeat Simple_repeat 2 30 0 1729 157 50 7 chrX 7614623 7614904 -154985026 - AluJo SINE Alu -19 293 1 2412 93 0 13 chrX 7615414 7615762 -154984168 - AluSg SINE Alu 0 310 1 1694 152 65 37 chrX 7616025 7616380 -154983550 - MLT1A1 LTR MaLR 0 365 1 2240 73 52 0 chrX 7616420 7616706 -154983224 - AluSq SINE Alu -12 301 1 341 276 75 68 chrX 7616785 7616895 -154983035 + L1MDa LINE L1 2205 2313 -4227 1792 149 4 7 chrX 7616895 7617176 -154982754 + AluJo SINE Alu 1 280 -32 243 0 0 0 chrX 7617176 7617203 -154982727 + (TAAA)n Simple_repeat Simple_repeat 4 30 0 341 276 75 68 chrX 7617203 7617399 -154982531 + L1MDa LINE L1 2312 2514 -4026 1858 138 3 49 chrX 7617401 7617726 -154982204 + AluJo SINE Alu 3 312 0 417 263 105 12 chrX 7618054 7618225 -154981705 - HAL1 LINE L1 -2296 211 25 1922 56 9 4 chrX 7618336 7618569 -154981361 + AluSq SINE Alu 70 303 -10 1850 191 34 29 chrX 7618591 7619037 -154980893 - MLT1D LTR MaLR 0 505 58 508 203 0 14 chrX 7619042 7619180 -154980750 + CT-rich Low_complexity Low_complexity 4 139 0 1793 172 7 14 chrX 7619758 7620055 -154979875 + AluJo SINE Alu 6 300 -12 2293 91 7 10 chrX 7620177 7620474 -154979456 + AluSq SINE Alu 1 296 -17 2826 153 35 28 chrX 7620968 7621536 -154978394 - L1MB3 LINE L1 -1 6182 5611 2212 108 3 20 chrX 7621536 7621842 -154978088 - AluSx SINE Alu -10 302 2 1946 124 41 21 chrX 7621844 7622134 -154977796 - AluJo SINE Alu -14 298 3 2003 156 11 0 chrX 7622136 7622495 -154977435 - L1MB3 LINE L1 -353 5830 5468 2048 93 21 21 chrX 7622500 7622790 -154977140 + AluSx SINE Alu 1 290 -22 672 199 7 7 chrX 7622797 7622933 -154976997 - LTR47A LTR ERVL -316 136 1 280 231 0 31 chrX 7622933 7622998 -154976932 - LTR49 LTR ERV1 -503 92 30 290 267 190 0 chrX 7623000 7623116 -154976814 - Charlie4 DNA MER1_type -12 1949 1812 1732 152 17 21 chrX 7623116 7623406 -154976524 + AluJo SINE Alu 3 291 -21 827 96 20 14 chrX 7623586 7623732 -154976198 + (TTCC)n Simple_repeat Simple_repeat 1 147 0 531 173 4 12 chrX 7623933 7624180 -154975750 + (CA)n Simple_repeat Simple_repeat 1 245 0 314 299 53 40 chrX 7624219 7624540 -154975390 - L1ME4a LINE L1 -209 5912 5588 2142 120 0 0 chrX 7624544 7624835 -154975095 - AluSx SINE Alu -21 291 1 457 167 0 0 chrX 7625219 7625291 -154974639 - FLAM_A SINE Alu -19 123 52 356 274 190 34 chrX 7625404 7625667 -154974263 + L1ME3A LINE L1 5852 6155 -15 1874 229 24 2 chrX 7625852 7626311 -154973619 + L1MB7 LINE L1 5458 5926 -258 567 319 22 22 chrX 7626309 7626622 -154973308 - L1ME LINE L1 -301 5820 5508 * 1698 162 0 23 chrX 7627750 7628059 -154971871 + AluJo SINE Alu 1 302 -10 331 210 12 25 chrX 7628109 7628190 -154971740 - L1MC5 LINE L1 -46 7915 7836 2084 125 0 0 chrX 7628261 7628558 -154971372 - AluSx SINE Alu -15 297 1 1622 183 10 3 chrX 7628848 7629149 -154970781 - AluJb SINE Alu -9 303 1 244 223 96 71 chrX 7629208 7629348 -154970582 - L1MC5 LINE L1 -408 7587 7260 305 223 31 52 chrX 7629391 7629502 -154970428 - L1MC4 LINE L1 -637 7251 7063 693 213 4 12 chrX 7629502 7629766 -154970164 + CT-rich Low_complexity Low_complexity 1 261 0 857 180 0 6 chrX 7629789 7629967 -154969963 + CT-rich Low_complexity Low_complexity 4 180 0 1220 170 4 42 chrX 7629998 7630239 -154969691 - AluJo SINE Alu -44 268 37 677 110 80 0 chrX 7630308 7630408 -154969522 + FLAM_A SINE Alu 20 127 -15 257 235 0 106 chrX 7630410 7630495 -154969435 - L1MC5 LINE L1 -852 7109 7034 1495 153 19 0 chrX 7630563 7630824 -154969106 - AluJb SINE Alu -3 309 44 394 256 27 94 chrX 7630897 7631061 -154968869 - L1MC5 LINE L1 -109 7852 7705 1933 87 79 4 chrX 7631061 7631338 -154968592 - AluSc SINE Alu -11 298 1 394 256 27 94 chrX 7631338 7631396 -154968534 - L1MC5 LINE L1 -256 7705 7645 21 36 0 0 chrX 7631407 7631435 -154968495 + AT_rich Low_complexity Low_complexity 1 28 0 720 165 0 9 chrX 7631447 7631562 -154968368 - FLAM_C SINE Alu -28 115 2 362 238 80 23 chrX 7631599 7631782 -154968148 - L1MC4 LINE L1 -796 7074 6829 2405 93 0 0 chrX 7632149 7632460 -154967470 - AluSx SINE Alu -1 311 1 918 89 0 0 chrX 7632521 7632644 -154967286 - AluY SINE Alu -16 295 173 930 128 64 0 chrX 7633040 7633212 -154966718 - L1MB7 LINE L1 -1 6183 6001 525 274 82 29 chrX 7633215 7633423 -154966507 - L1MC4 LINE L1 -1125 6917 6699 1935 123 7 26 chrX 7633425 7633727 -154966203 - AluSx SINE Alu -16 296 1 1626 221 102 63 chrX 7633978 7634576 -154965354 - L1MC4a LINE L1 -1766 6042 5416 840 155 16 0 chrX 7634576 7634705 -154965225 - FLAM_C SINE Alu -2 131 1 1626 221 102 63 chrX 7634705 7634753 -154965177 - L1MC4a LINE L1 -2392 5416 5371 1084 237 94 51 chrX 7634776 7635147 -154964783 - MLT1F1 LTR MaLR -2 565 179 1119 183 17 38 chrX 7635185 7635425 -154964505 - AluJo SINE Alu -77 235 1 395 311 26 32 chrX 7635425 7635596 -154964334 - MLT1F1 LTR MaLR -376 166 1 461 304 91 70 chrX 7635596 7635857 -154964073 - L1MC4a LINE L1 -800 5346 5073 2113 139 14 17 chrX 7635857 7635930 -154964000 - MER2 DNA MER2_type 0 344 272 1955 144 0 3 chrX 7635930 7636222 -154963708 + AluSx SINE Alu 5 295 -17 2113 139 14 17 chrX 7636222 7636493 -154963437 - MER2 DNA MER2_type -72 272 1 461 304 91 70 chrX 7636493 7636603 -154963327 - L1MC4a LINE L1 -1073 5073 4967 2091 115 7 0 chrX 7636606 7636901 -154963029 - AluSx SINE Alu -6 306 10 2414 154 75 97 chrX 7637032 7637591 -154962339 - MLT2B3 LTR ERVL -7 547 1 323 293 13 51 chrX 7637677 7637834 -154962096 - L1MC4a LINE L1 -1487 4659 4509 504 277 0 0 chrX 7637919 7638056 -154961874 - L1ME LINE L1 -427 5739 5603 1950 107 50 7 chrX 7638561 7638860 -154961070 + AluSx SINE Alu 1 312 0 322 130 0 0 chrX 7638918 7638964 -154960966 - Alu SINE Alu -257 46 1 2617 142 9 34 chrX 7639509 7639946 -154959984 - MSTB LTR MaLR 0 426 1 363 228 87 11 chrX 7639968 7640060 -154959870 - MER5A DNA MER1_type -89 100 2 1326 122 173 0 chrX 7640390 7640627 -154959303 - AluJb SINE Alu -14 298 21 2178 94 74 12 chrX 7640948 7641287 -154958643 + LTR4 LTR ERV1 237 596 0 1558 170 7 0 chrX 7641287 7641564 -154958366 - AluJb SINE Alu -33 279 1 2382 73 0 0 chrX 7641591 7641894 -154958036 + AluY SINE Alu 1 303 -8 1106 119 0 0 chrX 7641926 7642094 -154957836 - L1MA5A LINE L1 0 6297 6130 665 184 22 15 chrX 7642126 7642262 -154957668 - FRAM SINE Alu -8 168 32 525 111 46 19 chrX 7642262 7642370 -154957560 - L1MA5A LINE L1 -166 6131 6021 267 342 141 16 chrX 7642471 7642655 -154957275 + L2 LINE L2 2471 2677 -637 2217 106 0 3 chrX 7643759 7644071 -154955859 - AluSx SINE Alu -1 311 1 416 319 38 23 chrX 7644214 7644477 -154955453 + L1PB3 LINE L1 5559 5825 -329 * 3282 164 13 0 chrX 7644268 7644822 -154955108 + L1MC1 LINE L1 5614 6174 -159 1874 177 9 0 chrX 7645645 7645973 -154953957 + L1MB7 LINE L1 5842 6172 -12 180 0 0 0 chrX 7645974 7645994 -154953936 + (TA)n Simple_repeat Simple_repeat 1 20 0 1332 97 0 0 chrX 7646347 7646523 -154953407 - AluSg/x SINE Alu -2 308 133 398 306 93 41 chrX 7646524 7646988 -154952942 + L1M4 LINE L1 4117 4604 -1542 239 273 0 15 chrX 7647172 7647238 -154952692 + (TGGA)n Simple_repeat Simple_repeat 4 68 0 1787 154 0 13 chrX 7647387 7647685 -154952245 + AluJo SINE Alu 1 294 -18 1282 153 127 19 chrX 7647909 7648177 -154951753 - AluJb SINE Alu -13 299 3 986 100 7 0 chrX 7648177 7648317 -154951613 + Tigger1 DNA MER2_type 1794 1934 -484 3134 136 9 25 chrX 7648454 7648791 -154951139 + Tigger1 DNA MER2_type 1889 2217 -201 1929 122 7 10 chrX 7648791 7649087 -154950843 - AluJb SINE Alu -17 295 1 3134 136 9 25 chrX 7649087 7649278 -154950652 + Tigger1 DNA MER2_type 2217 2409 -9 369 75 0 0 chrX 7649278 7649331 -154950599 + (TG)n Simple_repeat Simple_repeat 1 53 0 2254 96 3 3 chrX 7649376 7649689 -154950241 + AluSp SINE Alu 1 313 0 333 191 143 12 chrX 7649926 7650010 -154949920 + L1ME4a LINE L1 6020 6114 -7 24 0 0 0 chrX 7650400 7650424 -154949506 + AT_rich Low_complexity Low_complexity 1 24 0 2125 93 7 0 chrX 7650430 7650720 -154949210 + AluSx SINE Alu 1 292 -20 4404 133 83 11 chrX 7650773 7651520 -154948410 + Tigger1 DNA MER2_type 789 1589 -829 746 155 148 0 chrX 7651919 7652061 -154947869 - Tigger1 DNA MER2_type -1467 951 789 186 43 0 0 chrX 7652091 7652114 -154947816 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 25 0 0 0 chrX 7652697 7652722 -154947208 + AT_rich Low_complexity Low_complexity 1 25 0 2481 43 0 7 chrX 7653081 7653380 -154946550 - AluY SINE Alu -14 297 1 2806 90 16 38 chrX 7653435 7653610 -154946320 - L1MA3 LINE L1 0 6305 6128 2237 96 0 10 chrX 7653610 7653923 -154946007 - AluSg SINE Alu 0 310 1 2806 90 16 38 chrX 7653923 7654193 -154945737 - L1MA3 LINE L1 -177 6128 5870 273 291 70 25 chrX 7654196 7654354 -154945576 - L1ME4a LINE L1 -223 5898 5734 22 0 0 0 chrX 7654429 7654451 -154945479 + AT_rich Low_complexity Low_complexity 1 22 0 2110 86 0 4 chrX 7654495 7654775 -154945155 + AluSc SINE Alu 1 279 -30 381 43 0 0 chrX 7654783 7654830 -154945100 + (TA)n Simple_repeat Simple_repeat 1 47 0 278 285 86 7 chrX 7655118 7655269 -154944661 - L1ME LINE L1 -279 6165 6003 259 293 64 0 chrX 7655394 7655506 -154944424 - L1ME LINE L1 -747 5877 5757 228 274 74 30 chrX 7655521 7655656 -154944274 - L1ME LINE L1 -767 5683 5543 258 271 0 14 chrX 7655666 7655736 -154944194 - LTR33 LTR ERVL -10 511 443 300 257 0 0 chrX 7655740 7655810 -154944120 - MER2 DNA MER2_type -5 340 271 195 42 0 0 chrX 7655844 7655868 -154944062 + (TGG)n Simple_repeat Simple_repeat 3 26 0 432 151 0 14 chrX 7655873 7655946 -154943984 - FLAM_A SINE Alu -29 113 42 1605 132 11 44 chrX 7656006 7656279 -154943651 - MER2 DNA MER2_type -80 265 2 285 252 47 28 chrX 7656280 7656387 -154943543 - LTR33 LTR ERVL -76 445 337 433 248 88 55 chrX 7656723 7656997 -154942933 + LTR40b LTR ERVL 179 461 -1 1554 194 10 0 chrX 7657113 7657417 -154942513 + L1MA9 LINE L1 5966 6272 -40 1724 158 0 0 chrX 7657467 7657780 -154942150 + AluJo SINE Alu 5 317 0 2135 104 0 0 chrX 7657929 7658217 -154941713 + AluSx SINE Alu 1 288 -24 378 272 65 92 chrX 7658292 7658630 -154941300 - MLT1J2 LTR MaLR -119 331 3 2327 78 3 3 chrX 7658688 7658995 -154940935 - AluSc SINE Alu -2 307 1 431 316 94 38 chrX 7659070 7659336 -154940594 - L1ME LINE L1 -1304 5122 4842 2146 115 0 10 chrX 7659443 7659755 -154940175 - AluSx SINE Alu -3 309 1 248 275 55 11 chrX 7659766 7660012 -154939918 - L1MCa LINE L1 -4625 1801 1407 452 308 69 77 chrX 7660133 7660332 -154939598 - L1MCa LINE L1 -5504 912 716 2169 86 0 0 chrX 7660332 7660623 -154939307 + AluSx SINE Alu 1 291 -21 452 308 69 77 chrX 7660623 7660800 -154939130 - L1MCa LINE L1 -5700 716 539 712 229 77 39 chrX 7660988 7661214 -154938716 - L1MC/D LINE L1 -383 5738 5494 749 152 0 40 chrX 7661333 7661458 -154938472 + FLAM_A SINE Alu 4 123 -10 2193 64 0 67 chrX 7661466 7661795 -154938135 + AluY SINE Alu 1 307 -4 192 97 0 0 chrX 7661813 7661844 -154938086 + (GGAA)n Simple_repeat Simple_repeat 4 34 0 2017 92 3 14 chrX 7661853 7662136 -154937794 + AluSg1 SINE Alu 5 284 -25 186 133 0 0 chrX 7662136 7662166 -154937764 + (CA)n Simple_repeat Simple_repeat 1 30 0 1564 201 26 0 chrX 7662174 7662477 -154937453 + AluJo SINE Alu 1 311 -1 488 226 51 113 chrX 7662607 7662744 -154937186 - MER5A DNA MER1_type 0 189 66 2447 66 0 0 chrX 7662744 7663045 -154936885 - AluSc SINE Alu -8 301 1 488 226 51 113 chrX 7663045 7663102 -154936828 - MER5A DNA MER1_type -123 66 7 183 100 0 0 chrX 7663317 7663347 -154936583 + (CA)n Simple_repeat Simple_repeat 1 30 0 1023 139 69 56 chrX 7665062 7665278 -154934652 - MER20 DNA MER1_type 0 219 1 2150 74 11 3 chrX 7665344 7665628 -154934302 + AluSq SINE Alu 13 298 -15 260 68 91 23 chrX 7665662 7665706 -154934224 - MLT1A2 LTR MaLR 0 374 328 448 269 17 23 chrX 7665712 7665887 -154934043 - L1MC5 LINE L1 -714 7247 7074 2019 195 37 33 chrX 7666167 7666624 -154933306 - MLT1C LTR MaLR -2 465 7 674 225 11 78 chrX 7666853 7667044 -154932886 + MER45A DNA AcHobo 1 178 0 288 190 17 0 chrX 7667475 7667533 -154932397 - MER5A DNA MER1_type -122 67 9 1813 174 0 0 chrX 7667553 7667863 -154932067 + AluJb SINE Alu 1 310 -2 1799 206 49 62 chrX 7667905 7668375 -154931555 + MLT2B1 LTR ERVL 1 464 -56 258 32 0 0 chrX 7668383 7668414 -154931516 + (TC)n Simple_repeat Simple_repeat 1 31 0 198 0 0 0 chrX 7668414 7668436 -154931494 + (TG)n Simple_repeat Simple_repeat 1 22 0 * 261 0 0 0 chrX 7668435 7668464 -154931466 + (GA)n Simple_repeat Simple_repeat 1 29 0 188 333 19 56 chrX 7668534 7668642 -154931288 + MIR SINE MIR 48 151 -111 1384 156 13 0 chrX 7668663 7668888 -154931042 + AluJb SINE Alu 62 289 -23 930 180 37 32 chrX 7668916 7669133 -154930797 - MER20 DNA MER1_type -1 218 1 336 48 0 0 chrX 7670959 7671001 -154928929 + (CA)n Simple_repeat Simple_repeat 1 42 0 336 24 0 0 chrX 7671002 7671043 -154928887 + (GA)n Simple_repeat Simple_repeat 2 42 0 213 284 37 46 chrX 7671378 7671487 -154928443 + MIR SINE MIR 113 220 -42 572 248 103 51 chrX 7671502 7671736 -154928194 - LTR16A1 LTR ERVL 0 457 212 186 42 0 0 chrX 7671911 7671935 -154927995 + MIR SINE MIR 113 136 -72 1038 149 0 6 chrX 7672837 7673012 -154926918 - AluJb SINE Alu -2 310 137 2278 58 20 3 chrX 7673027 7673321 -154926609 - AluSg SINE Alu -11 299 1 310 278 14 47 chrX 7674272 7674501 -154925429 + G-rich Low_complexity Low_complexity 1 221 0 236 29 0 29 chrX 7674682 7674716 -154925214 + (CGG)n Simple_repeat Simple_repeat 2 34 0 41 21 0 0 chrX 7674846 7674894 -154925036 + GC_rich Low_complexity Low_complexity 1 48 0 241 216 29 20 chrX 7674902 7675004 -154924926 + (CGG)n Simple_repeat Simple_repeat 2 104 0 30 83 0 0 chrX 7675050 7675122 -154924808 + GC_rich Low_complexity Low_complexity 1 72 0 26 44 6 0 chrX 7675283 7675372 -154924558 + GC_rich Low_complexity Low_complexity 1 47 0 2159 104 10 0 chrX 7678059 7678356 -154921574 + AluSx SINE Alu 1 300 -12 1845 146 0 31 chrX 7678468 7678790 -154921140 + AluJb SINE Alu 1 312 0 282 56 0 0 chrX 7679701 7679737 -154920193 + (TTTA)n Simple_repeat Simple_repeat 2 37 0 204 40 0 0 chrX 7680477 7680502 -154919428 + (TTTTC)n Simple_repeat Simple_repeat 2 26 0 1975 100 7 41 chrX 7680504 7680795 -154919135 - AluSx SINE Alu -31 281 1 195 42 0 0 chrX 7681348 7681372 -154918558 + (TTCA)n Simple_repeat Simple_repeat 1 24 0 210 330 70 10 chrX 7681372 7681472 -154918458 - L2 LINE L2 -13 3300 3195 2893 124 62 11 chrX 7681928 7682378 -154917552 + MLT1D LTR MaLR 14 486 -19 287 122 0 0 chrX 7682381 7682422 -154917508 + MLT1D LTR MaLR 464 504 -1 228 284 80 23 chrX 7682499 7682587 -154917343 - MIR SINE MIR -8 254 162 721 122 0 17 chrX 7683101 7683216 -154916714 - FRAM SINE Alu -8 168 56 715 229 37 55 chrX 7683234 7683452 -154916478 - MER20 DNA MER1_type 0 219 6 228 111 0 0 chrX 7683793 7683829 -154916101 + (TG)n Simple_repeat Simple_repeat 1 36 0 1052 168 89 5 chrX 7684433 7684459 -154915471 - L1MB7 LINE L1 -29 6155 6133 2169 107 0 10 chrX 7684459 7684768 -154915162 + AluSx SINE Alu 5 310 -2 1052 168 89 5 chrX 7684768 7684955 -154914975 - L1MB7 LINE L1 -51 6133 5924 327 156 16 16 chrX 7684955 7685019 -154914911 + L1MD2 LINE L1 6282 6345 -14 25 31 0 0 chrX 7685060 7685092 -154914838 + AT_rich Low_complexity Low_complexity 1 32 0 313 167 0 0 chrX 7685122 7685170 -154914760 + L2 LINE L2 3261 3308 -5 919 169 23 68 chrX 7685390 7685609 -154914321 + MER20 DNA MER1_type 1 209 -10 390 280 147 56 chrX 7685604 7686032 -154913898 + MLT1L LTR MaLR 143 609 -6 * 659 151 155 87 chrX 7686295 7686514 -154913416 - L1MD3 LINE L1 -1 7994 7761 1138 197 66 31 chrX 7687078 7687398 -154912532 + L1MB8 LINE L1 5848 6178 0 2064 135 0 0 chrX 7687400 7687704 -154912226 - AluSx SINE Alu -6 306 3 1277 110 5 19 chrX 7688160 7688369 -154911561 + MER6 DNA MER2_type 659 864 -1 471 327 83 5 chrX 7688411 7688616 -154911314 + MIR SINE MIR 23 243 -19 1849 136 26 16 chrX 7688710 7689019 -154910911 + AluJb SINE Alu 1 312 0 368 157 16 15 chrX 7689254 7689339 -154910591 - MER58B DNA MER1_type -15 326 112 904 194 25 0 chrX 7689363 7689523 -154910407 - MER58A DNA MER1_type 0 166 3 2400 66 0 3 chrX 7689543 7689845 -154910085 - AluSg SINE Alu -9 301 1 1635 183 63 7 chrX 7689882 7690182 -154909748 + MER7A DNA MER2_type 32 346 0 1836 120 60 0 chrX 7690427 7690711 -154909219 + AluJo SINE Alu 1 301 -11 437 240 59 44 chrX 7691143 7691347 -154908583 + MER20 DNA MER1_type 2 208 -11 252 266 228 27 chrX 7691638 7691901 -154908029 - L2 LINE L2 -439 2875 2560 2267 83 0 0 chrX 7692188 7692476 -154907454 + AluSx SINE Alu 1 288 -24 25 0 0 0 chrX 7692531 7692556 -154907374 + AT_rich Low_complexity Low_complexity 1 25 0 187 51 0 51 chrX 7694973 7695012 -154904918 + (TA)n Simple_repeat Simple_repeat 2 38 0 1887 127 3 3 chrX 7695012 7695296 -154904634 - AluSx SINE Alu -28 284 1 234 275 100 0 chrX 7695347 7695427 -154904503 - MER5B DNA MER1_type -2 176 89 1362 112 10 10 chrX 7695508 7695713 -154904217 + AluSg/x SINE Alu 96 300 -12 1048 130 6 150 chrX 7695719 7695974 -154903956 - L1MB5 LINE L1 -15 6159 5937 511 172 35 35 chrX 7696141 7696257 -154903673 - L1MB5 LINE L1 -242 5936 5821 1043 156 0 6 chrX 7696259 7696426 -154903504 - AluJb SINE Alu -13 299 134 2569 144 21 88 chrX 7696426 7696707 -154903223 - L1MB5 LINE L1 -346 5828 5607 2457 64 0 0 chrX 7696707 7697018 -154902912 - AluY SINE Alu 0 311 1 2569 144 21 88 chrX 7697018 7697341 -154902589 - L1MB5 LINE L1 -567 5607 5264 2594 39 0 0 chrX 7697407 7697714 -154902216 - AluY SINE Alu -3 308 2 206 118 0 0 chrX 7698935 7698969 -154900961 + (TTTTTA)n Simple_repeat Simple_repeat 3 36 0 2130 224 79 88 chrX 7699553 7700355 -154899575 - MER21B LTR ERV1 -69 794 1 278 262 83 12 chrX 7700450 7700534 -154899396 + MER5B DNA MER1_type 2 91 -87 396 241 60 9 chrX 7701246 7701362 -154898568 - Charlie8 DNA MER1_type -2152 265 144 645 123 85 0 chrX 7701390 7701496 -154898434 - FLAM_C SINE Alu -18 115 1 233 162 88 15 chrX 7701497 7701565 -154898365 - Charlie8 DNA MER1_type -2263 154 82 1755 161 31 3 chrX 7701945 7702236 -154897694 - AluSx SINE Alu -11 301 3 262 287 10 20 chrX 7702463 7702564 -154897366 - L1ME LINE L1 -343 5778 5679 869 221 40 25 chrX 7702594 7702793 -154897137 - MER20 DNA MER1_type -17 202 1 614 217 35 25 chrX 7702988 7703191 -154896739 - MLT1B LTR MaLR 0 383 173 580 220 112 25 chrX 7703230 7703416 -154896514 - MLT1B LTR MaLR -187 187 1 2414 188 86 57 chrX 7703416 7704244 -154895686 - MLT1B-int LTR MaLR 0 1735 591 222 246 0 0 chrX 7704245 7704359 -154895571 + (TCCA)n Simple_repeat Simple_repeat 2 115 0 2190 107 0 0 chrX 7705861 7706159 -154893771 - AluSq SINE Alu -15 298 1 189 0 0 0 chrX 7707387 7707408 -154892522 + (TTG)n Simple_repeat Simple_repeat 2 22 0 249 307 189 16 chrX 7708185 7708312 -154891618 + MIR SINE MIR 42 190 -72 21 36 0 0 chrX 7708575 7708603 -154891327 + AT_rich Low_complexity Low_complexity 1 28 0 468 266 70 6 chrX 7708992 7709163 -154890767 - L1ME1 LINE L1 -5 6161 5963 198 0 0 0 chrX 7709973 7709995 -154889935 + (GGCTG)n Simple_repeat Simple_repeat 4 25 0 1083 202 80 10 chrX 7710341 7710643 -154889287 + MER33 DNA MER1_type 2 324 0 227 259 17 0 chrX 7711107 7711165 -154888765 - MIR SINE MIR -132 130 72 1191 262 96 20 chrX 7712210 7712618 -154887312 - MLT1J2 LTR MaLR -11 439 1 1648 219 83 23 chrX 7714388 7714822 -154885108 + MLT1D LTR MaLR 1 460 -45 1890 161 15 6 chrX 7715744 7716080 -154883850 - L1MB7 LINE L1 -19 6165 5827 2182 141 78 15 chrX 7716080 7716476 -154883454 + Tigger2a DNA MER2_type 2 422 -12 1528 150 7 29 chrX 7716476 7716749 -154883181 - L1MB7 LINE L1 -357 5827 5561 238 212 15 0 chrX 7716757 7716823 -154883107 + L1ME4a LINE L1 5711 5777 -344 329 305 65 0 chrX 7717085 7717239 -154882691 + L1ME4a LINE L1 5860 6023 -98 1718 128 0 110 chrX 7717972 7718300 -154881630 + AluJb SINE Alu 5 296 -6 361 278 93 20 chrX 7718904 7719055 -154880875 - Tigger8 DNA MER2_type -270 396 235 2105 115 0 3 chrX 7719942 7720247 -154879683 - AluSx SINE Alu -8 304 1 805 69 0 0 chrX 7720600 7720701 -154879229 + HY3 scRNA scRNA 1 101 0 1615 164 34 10 chrX 7721008 7721306 -154878624 - AluJo SINE Alu -7 305 1 193 182 23 23 chrX 7721316 7721360 -154878570 + MIR SINE MIR 182 225 -37 270 0 0 0 chrX 7723339 7723369 -154876561 + (TG)n Simple_repeat Simple_repeat 2 31 0 960 220 28 5 chrX 7723441 7723655 -154876275 + MER20 DNA MER1_type 1 219 0 342 0 0 0 chrX 7724696 7724734 -154875196 + (TG)n Simple_repeat Simple_repeat 2 39 0 305 113 38 0 chrX 7724735 7724788 -154875142 - L1MB4 LINE L1 -14 6166 6112 1791 194 22 20 chrX 7724788 7725176 -154874754 - L1MB5 LINE L1 -9 6165 5762 445 299 128 6 chrX 7727041 7727205 -154872725 - L2 LINE L2 -3 3310 3127 1357 209 26 7 chrX 7728220 7728527 -154871403 - L1M4 LINE L1 -2449 3697 3385 875 259 49 0 chrX 7728534 7728739 -154871191 - MER58A DNA MER1_type -5 219 5 1957 220 101 11 chrX 7728743 7729352 -154870578 - L1M4 LINE L1 -2756 3390 2722 2153 89 0 26 chrX 7729352 7729656 -154870274 - AluSx SINE Alu -16 296 1 1957 220 101 11 chrX 7729656 7729670 -154870260 - L1M4 LINE L1 -3424 2722 2711 294 253 13 0 chrX 7729788 7729867 -154870063 - MER116 DNA Mariner 0 80 1 847 157 0 15 chrX 7730038 7730172 -154869758 + FLAM_C SINE Alu 1 132 -1 306 359 10 0 chrX 7731301 7731404 -154868526 - MIR SINE MIR -111 151 48 216 0 49 49 chrX 7731707 7731748 -154868182 + (TTTTG)n Simple_repeat Simple_repeat 2 42 0 2059 87 11 0 chrX 7731750 7732026 -154867904 - AluSc SINE Alu -30 279 1 215 267 33 0 chrX 7732653 7732713 -154867217 + L3 LINE CR1 1471 1532 -45 966 215 47 19 chrX 7732718 7732932 -154866998 + MER58A DNA MER1_type 5 224 0 484 224 191 0 chrX 7732943 7733090 -154866840 - MER5B DNA MER1_type -3 175 1 1961 157 0 0 chrX 7733373 7733685 -154866245 - AluJb SINE Alu 0 312 1 2027 119 3 3 chrX 7734957 7735252 -154864678 + AluSx SINE Alu 1 295 -17 27 29 0 0 chrX 7735353 7735387 -154864543 + AT_rich Low_complexity Low_complexity 1 34 0 299 221 90 62 chrX 7735553 7735698 -154864232 - MLT1L LTR MaLR -2 613 465 2278 80 0 3 chrX 7735918 7736217 -154863713 - AluSc SINE Alu -11 298 1 227 263 71 0 chrX 7737670 7737769 -154862161 - L1ME4a LINE L1 -43 6078 5973 338 291 64 35 chrX 7738584 7738756 -154861174 - MER5A DNA MER1_type 0 189 13 458 214 45 0 chrX 7739424 7739536 -154860394 - MER3 DNA MER1_type -70 139 70 1579 79 0 0 chrX 7739632 7739834 -154860096 + AluSx SINE Alu 1 202 -110 1030 117 0 6 chrX 7739834 7739997 -154859933 + AluSg/x SINE Alu 150 311 -1 624 216 9 0 chrX 7740013 7740129 -154859801 - MER20 DNA MER1_type -102 117 1 340 191 44 15 chrX 7740130 7740198 -154859732 - MER3 DNA MER1_type -133 76 7 1533 199 87 9 chrX 7740462 7740809 -154859121 - MLT1A2 LTR MaLR 0 374 1 2133 106 3 0 chrX 7741129 7741430 -154858500 - AluSq SINE Alu -11 302 1 2172 104 13 7 chrX 7741813 7742120 -154857810 - AluSx SINE Alu -3 309 1 491 248 103 25 chrX 7743654 7743896 -154856034 - L1MC5 LINE L1 -37 7924 7664 888 200 49 42 chrX 7743969 7744254 -154855676 - L1MC5 LINE L1 -426 7535 7249 1127 250 5 24 chrX 7744339 7744446 -154855484 - L1ME LINE L1 -471 5699 5592 1268 155 8 76 chrX 7744446 7744697 -154855233 - MER46A DNA MER2_type -1 235 2 1127 250 5 24 chrX 7744697 7744881 -154855049 - L1ME LINE L1 -578 5592 5409 2243 95 0 7 chrX 7745197 7745503 -154854427 - AluSx SINE Alu -8 304 1 725 280 109 18 chrX 7745913 7746252 -154853678 + L2 LINE L2 2913 3282 -31 270 290 42 3 chrX 7747510 7747609 -154852321 + MIR SINE MIR 43 150 -58 569 255 39 39 chrX 7748963 7749167 -154850763 - MIR SINE MIR -28 234 31 228 163 0 0 chrX 7749525 7749568 -154850362 + GA-rich Low_complexity Low_complexity 2 44 0 198 167 0 0 chrX 7750377 7750413 -154849517 + (CA)n Simple_repeat Simple_repeat 2 37 0 819 93 14 72 chrX 7750439 7750578 -154849352 + MER2 DNA MER2_type 2 132 -213 1784 151 14 0 chrX 7750578 7750862 -154849068 - AluJb SINE Alu -13 299 12 1042 164 99 5 chrX 7750870 7751083 -154848847 - MLT1C LTR MaLR -234 233 1 290 302 129 28 chrX 7751149 7751397 -154848533 - L1MC4a LINE L1 -1756 6052 5780 536 220 10 0 chrX 7751871 7751971 -154847959 + MER5A DNA MER1_type 55 155 -34 1786 149 6 32 chrX 7752580 7752896 -154847034 + AluJo SINE Alu 1 308 -4 548 184 73 112 chrX 7753931 7754164 -154845766 - MER58A DNA MER1_type 0 224 1 1872 221 156 29 chrX 7755318 7755844 -154844086 - MLT1E LTR MaLR 0 593 1 181 221 110 110 chrX 7756049 7756185 -154843745 + L3b LINE CR1 1183 1318 -265 1507 139 82 36 chrX 7756278 7756558 -154843372 + AluJo SINE Alu 1 293 -19 2462 56 0 0 chrX 7757057 7757360 -154842570 - AluY SINE Alu -8 303 1 421 246 27 0 chrX 7759770 7759880 -154840050 + MER20 DNA MER1_type 104 216 -3 275 260 122 8 chrX 7759927 7760050 -154839880 + L2 LINE L2 2791 2927 -387 2068 192 123 9 chrX 7760123 7760570 -154839360 + MLT1D LTR MaLR 8 505 0 309 290 264 39 chrX 7760574 7760884 -154839046 + L2 LINE L2 2934 3313 0 366 259 45 9 chrX 7761964 7762076 -154837854 - L1MC4 LINE L1 -1315 6727 6612 2832 129 33 87 chrX 7763366 7763908 -154836022 - MLT2B2 LTR ERVL 0 515 3 2141 90 0 75 chrX 7764108 7764442 -154835488 - AluSx SINE Alu -3 309 1 300 339 56 17 chrX 7767855 7768035 -154831895 + MER117 DNA MER1_type 4 190 -7 182 182 227 0 chrX 7772910 7772954 -154826976 + MIR SINE MIR 95 148 -114 2502 20 0 23 chrX 7773028 7773327 -154826603 - AluY SINE Alu -19 292 1 486 163 23 0 chrX 7773444 7773530 -154826400 - Charlie1 DNA MER1_type 0 2761 2674 1015 243 50 38 chrX 7773598 7773690 -154826240 - Charlie1 DNA MER1_type -74 2687 2598 1908 152 0 0 chrX 7773690 7773986 -154825944 + AluJb SINE Alu 1 296 -16 1015 243 50 38 chrX 7773986 7774234 -154825696 - Charlie1 DNA MER1_type -163 2598 2343 348 278 0 14 chrX 7774232 7774304 -154825626 - Charlie1 DNA MER1_type -2690 71 1 * 410 188 10 86 chrX 7774625 7774780 -154825150 - MIR SINE MIR -67 141 2 260 258 11 67 chrX 7774921 7775010 -154824920 - L2 LINE L2 0 3313 3230 204 204 37 0 chrX 7775271 7775337 -154824593 + (TCCA)n Simple_repeat Simple_repeat 1 68 0 918 128 0 0 chrX 7775338 7775510 -154824420 + (CCCA)n Simple_repeat Simple_repeat 2 173 0 258 328 51 26 chrX 7776233 7776428 -154823502 - MIR SINE MIR -50 212 13 694 151 227 54 chrX 7777952 7778137 -154821793 + MER20 DNA MER1_type 2 218 -1 308 328 121 23 chrX 7778197 7778371 -154821559 + MIR3 SINE MIR 5 195 -13 1863 178 10 0 chrX 7782651 7782960 -154816970 - AluJo SINE Alu 0 312 1 1076 107 0 0 chrX 7782967 7783098 -154816832 - AluSq/x SINE Alu -181 131 1 2380 106 0 0 chrX 7783139 7783450 -154816480 + AluSx SINE Alu 1 311 -1 302 247 14 0 chrX 7785846 7785919 -154814011 + CT-rich Low_complexity Low_complexity 1 74 0 594 277 33 5 chrX 7786103 7786287 -154813643 + MER53 DNA DNA 1 189 0 2131 107 0 14 chrX 7786700 7786981 -154812949 + AluSx SINE Alu 3 279 -33 315 71 0 0 chrX 7786981 7787023 -154812907 + (CA)n Simple_repeat Simple_repeat 1 42 0 1403 144 156 0 chrX 7787044 7787294 -154812636 - AluJo SINE Alu -13 289 1 611 263 105 27 chrX 7788519 7788783 -154811147 - L1MB8 LINE L1 0 6178 5891 379 278 32 8 chrX 7790337 7790463 -154809467 - L1MC4 LINE L1 -1 8041 7913 1924 125 23 38 chrX 7790721 7791066 -154808864 + L1MB2 LINE L1 5550 5889 -282 268 158 13 145 chrX 7791066 7791142 -154808788 + MER21B LTR ERV1 9 74 -789 812 11 0 0 chrX 7791147 7791236 -154808694 - AluY SINE Alu -45 266 178 1023 161 84 77 chrX 7791278 7791399 -154808531 + L1MB2 LINE L1 5871 5990 -181 4592 133 20 19 chrX 7791399 7791961 -154807969 - LTR39 LTR ERV1 0 783 218 2255 115 0 13 chrX 7791961 7792275 -154807655 - AluSx SINE Alu -2 310 1 4592 133 20 19 chrX 7792275 7792494 -154807436 - LTR39 LTR ERV1 -565 218 1 1023 161 84 77 chrX 7792494 7792670 -154807260 + L1MB2 LINE L1 5990 6170 -1 942 269 72 74 chrX 7792816 7792933 -154806997 - L2 LINE L2 -514 2800 2684 1863 199 35 2 chrX 7792933 7793360 -154806570 - L1MB5 LINE L1 -8 6166 5726 942 269 72 74 chrX 7793360 7793756 -154806174 - L2 LINE L2 -630 2684 2288 417 264 40 40 chrX 7794477 7794651 -154805279 - MER5B DNA MER1_type 0 178 5 236 29 0 29 chrX 7795797 7795831 -154804099 + (TTTTG)n Simple_repeat Simple_repeat 2 34 0 531 0 0 0 chrX 7796443 7796502 -154803428 + (TA)n Simple_repeat Simple_repeat 2 60 0 234 0 0 0 chrX 7796502 7796528 -154803402 + (TG)n Simple_repeat Simple_repeat 2 27 0 2316 108 0 0 chrX 7796641 7796938 -154802992 + AluSx SINE Alu 1 297 -15 834 225 14 28 chrX 7796958 7797176 -154802754 - MER20 DNA MER1_type -1 218 4 347 273 166 32 chrX 7797573 7797760 -154802170 - L1ME4a LINE L1 -225 5896 5685 330 309 10 0 chrX 7797800 7797897 -154802033 - L1ME4a LINE L1 -531 5590 5493 243 0 0 0 chrX 7798739 7798766 -154801164 + (A)n Simple_repeat Simple_repeat 1 27 0 2003 149 10 0 chrX 7799025 7799320 -154800610 - AluSx SINE Alu -14 298 1 312 308 77 72 chrX 7799417 7799638 -154800292 - L1ME4a LINE L1 -219 5902 5681 1706 173 33 0 chrX 7799652 7799924 -154800006 - AluJb SINE Alu -31 281 1 329 214 19 48 chrX 7800064 7800167 -154799763 - L1ME3A LINE L1 -184 5986 5887 1702 164 88 6 chrX 7800173 7800515 -154799415 - L1MB5 LINE L1 -6 6168 5799 337 261 0 0 chrX 7800577 7800646 -154799284 - L2 LINE L2 0 3313 3245 1301 200 0 0 chrX 7802893 7803123 -154796807 - AluJo SINE Alu -7 305 76 509 263 167 6 chrX 7803954 7804319 -154795611 - L1MC5 LINE L1 -49 7912 7489 * 3420 169 77 6 chrX 7804298 7805000 -154794930 - L1MB8 LINE L1 0 6178 5427 2248 108 0 0 chrX 7805006 7805292 -154794638 - AluSx SINE Alu -22 290 5 228 324 0 0 chrX 7805397 7805471 -154794459 + (TA)n Simple_repeat Simple_repeat 2 75 0 337 215 75 0 chrX 7805474 7805581 -154794349 - L1MC4a LINE L1 -1834 5974 5860 657 221 0 0 chrX 7805583 7805714 -154794216 + FLAM_A SINE Alu 1 131 -2 1027 243 102 25 chrX 7805738 7806141 -154793789 - MLT1C LTR MaLR -6 451 21 245 136 25 86 chrX 7806163 7806244 -154793686 - MLT1C-int LTR MaLR -1 1370 1295 846 265 82 60 chrX 7806292 7806361 -154793569 - L1MC4a LINE L1 -2021 5787 5721 2427 82 0 0 chrX 7806361 7806653 -154793277 + AluSg SINE Alu 1 292 -18 846 265 82 60 chrX 7806653 7806706 -154793224 - L1MC4a LINE L1 -2087 5721 5671 712 143 15 15 chrX 7806706 7806839 -154793091 - FLAM_C SINE Alu 0 133 1 846 265 82 60 chrX 7806839 7807081 -154792849 - L1MC4a LINE L1 -2137 5671 5414 555 289 91 9 chrX 7807091 7807433 -154792497 - L1MC4a LINE L1 -1378 4768 4399 2024 139 3 10 chrX 7807561 7807856 -154792074 + AluJo SINE Alu 1 293 -19 2369 91 3 0 chrX 7807858 7808155 -154791775 + AluSg SINE Alu 1 298 -12 2508 166 37 68 chrX 7808158 7808476 -154791454 - MER21B LTR ERV1 -254 609 314 1968 55 0 0 chrX 7808476 7808733 -154791197 - L1PA5 LINE L1 -3 6151 5895 2508 166 37 68 chrX 7808733 7808975 -154790955 - MER21B LTR ERV1 -549 314 66 2161 129 7 3 chrX 7809001 7809311 -154790619 + AluSq SINE Alu 3 313 0 210 248 78 39 chrX 7809372 7809501 -154790429 + L2 LINE L2 2912 3045 -227 1600 173 78 30 chrX 7809551 7809922 -154790008 - MLT1B LTR MaLR 0 390 2 246 299 55 37 chrX 7809966 7810130 -154789800 + L2 LINE L2 3106 3272 0 2232 183 40 36 chrX 7810142 7810640 -154789290 - MLT1D LTR MaLR -2 503 4 898 198 46 0 chrX 7810998 7811195 -154788735 + MER3 DNA MER1_type 3 208 -1 344 296 86 49 chrX 7811349 7811511 -154788419 - MER63B DNA MER1_type -268 168 1 225 0 0 0 chrX 7811997 7812022 -154787908 + (TTCA)n Simple_repeat Simple_repeat 3 27 0 437 138 9 207 chrX 7812135 7812229 -154787701 - MER96B DNA MER1_type? 0 417 388 2518 99 0 0 chrX 7812229 7812542 -154787388 + AluSq SINE Alu 1 313 0 437 138 9 207 chrX 7812542 7812664 -154787266 - MER96B DNA MER1_type? -29 388 244 244 279 95 68 chrX 7812943 7813090 -154786840 - MIR SINE MIR -38 224 74 1740 109 29 0 chrX 7813589 7813828 -154786102 + AluSx SINE Alu 46 291 -21 261 136 45 0 chrX 7813828 7813894 -154786036 + (TA)n Simple_repeat Simple_repeat 2 70 0 785 151 65 121 chrX 7814307 7814539 -154785391 - MER20 DNA MER1_type 0 219 1 1071 113 0 0 chrX 7814642 7814783 -154785147 + FRAM SINE Alu 20 160 -16 268 359 34 0 chrX 7814803 7814920 -154785010 + L3b LINE CR1 1254 1374 -209 477 301 62 43 chrX 7815126 7815542 -154784388 - L1ME4a LINE L1 -1 6120 5697 298 325 48 66 chrX 7819222 7819329 -154780601 + MIR3 SINE MIR 45 149 -59 1282 126 14 31 chrX 7819329 7819552 -154780378 - MER20 DNA MER1_type 0 219 1 298 325 48 66 chrX 7819552 7819610 -154780320 + MIR3 SINE MIR 149 207 -1 263 250 100 10 chrX 7819888 7819988 -154779942 + MIR SINE MIR 83 191 -71 285 51 0 0 chrX 7820489 7820528 -154779402 + (TC)n Simple_repeat Simple_repeat 1 39 0 298 288 38 57 chrX 7820760 7821000 -154778930 + L1MC4 LINE L1 7452 7679 -285 1203 246 112 35 chrX 7821072 7821370 -154778560 + MLT1F1 LTR MaLR 68 416 -151 2370 95 0 3 chrX 7821370 7821674 -154778256 - AluSx SINE Alu -9 303 1 1203 246 112 35 chrX 7821674 7821839 -154778091 + MLT1F1 LTR MaLR 416 567 0 1248 192 12 8 chrX 7821943 7822193 -154777737 - Charlie1b DNA MER1_type -268 255 5 321 313 121 6 chrX 7822194 7822360 -154777570 + L1MC4 LINE L1 7858 8042 0 2262 103 7 0 chrX 7822758 7823059 -154776871 - AluSx SINE Alu -9 303 1 1190 178 5 0 chrX 7823111 7823319 -154776611 - MER20 DNA MER1_type 0 219 11 533 281 66 16 chrX 7823495 7823976 -154775954 - L2 LINE L2 -252 3061 2553 238 314 29 0 chrX 7824267 7824369 -154775561 + L2 LINE L2 2873 2977 -336 253 219 0 0 chrX 7824525 7824589 -154775341 + L2 LINE L2 2922 2985 -328 602 234 0 0 chrX 7825499 7825627 -154774303 + MLT1B LTR MaLR 1 128 -262 578 178 0 0 chrX 7825638 7825739 -154774191 + MLT1B LTR MaLR 283 383 -7 209 137 260 0 chrX 7825917 7825990 -154773940 + MIR SINE MIR 47 138 -124 1092 206 50 21 chrX 7826779 7827017 -154772913 + MLT1F LTR MaLR 7 251 -291 720 201 126 0 chrX 7827049 7827223 -154772707 + MLT1F LTR MaLR 343 538 -4 1093 217 96 35 chrX 7827974 7828319 -154771611 - L1ME3A LINE L1 -3 6167 5802 334 250 75 19 chrX 7828328 7828488 -154771442 - L1MDa LINE L1 -4763 1777 1609 25 65 0 0 chrX 7828939 7828985 -154770945 + AT_rich Low_complexity Low_complexity 1 46 0 2454 90 7 0 chrX 7829119 7829429 -154770501 - AluSx SINE Alu 0 312 1 198 351 78 0 chrX 7829653 7829730 -154770200 - L2 LINE L2 -69 3203 3121 28 29 0 0 chrX 7829767 7829802 -154770128 + AT_rich Low_complexity Low_complexity 1 35 0 821 235 11 0 chrX 7829880 7830067 -154769863 + MER5A DNA MER1_type 1 189 0 2267 89 0 20 chrX 7830226 7830529 -154769401 - AluSx SINE Alu -15 297 1 260 243 37 37 chrX 7830542 7830649 -154769281 - L1ME3A LINE L1 -971 5175 5069 644 247 130 53 chrX 7830745 7830933 -154768997 - LTR16C LTR ERVL 0 491 278 3499 168 7 2 chrX 7830933 7831492 -154768438 - MER68 LTR ERV1 0 562 1 644 247 130 53 chrX 7831492 7831550 -154768380 - LTR16C LTR ERVL -213 278 226 278 177 65 16 chrX 7831535 7831597 -154768333 + MER68 LTR ERV1 370 434 -128 * 225 65 0 0 chrX 7831974 7832005 -154767925 + (TG)n Simple_repeat Simple_repeat 1 31 0 215 178 44 0 chrX 7832567 7832612 -154767318 + MER5A DNA MER1_type 63 109 -80 582 256 18 0 chrX 7832664 7832828 -154767102 - MER5B DNA MER1_type -7 171 5 246 207 35 0 chrX 7833020 7833078 -154766852 + MER5A DNA MER1_type 50 109 -80 764 223 31 0 chrX 7833251 7833444 -154766486 - MER20 DNA MER1_type -7 212 14 205 307 67 0 chrX 7833873 7833948 -154765982 - MIR SINE MIR -77 185 106 259 233 58 35 chrX 7834285 7834371 -154765559 - L1ME3A LINE L1 -219 5951 5864 876 118 0 0 chrX 7835198 7835334 -154764596 + (TC)n Simple_repeat Simple_repeat 2 137 0 239 237 0 34 chrX 7835562 7835621 -154764309 + L2 LINE L2 3239 3295 -18 934 228 13 35 chrX 7835635 7835863 -154764067 + MER58A DNA MER1_type 1 223 -1 1396 246 66 22 chrX 7836255 7836369 -154763561 + L1ME3A LINE L1 5694 5801 -369 1656 203 15 12 chrX 7836369 7836709 -154763221 + MER58B DNA MER1_type 1 341 0 1396 246 66 22 chrX 7836709 7837046 -154762884 + L1ME3A LINE L1 5801 6165 -5 3333 146 26 36 chrX 7837065 7837669 -154762261 + L1MB7 LINE L1 5576 6173 -11 213 60 20 40 chrX 7838177 7838227 -154761703 + (CAAAAA)n Simple_repeat Simple_repeat 2 50 0 1001 266 24 20 chrX 7839092 7839340 -154760590 - MIR SINE MIR -5 257 9 246 247 86 11 chrX 7839447 7839540 -154760390 + L1ME4a LINE L1 5977 6076 -45 828 210 54 114 chrX 7839568 7839842 -154760088 + MLT1G LTR MaLR 11 212 -378 2626 67 3 0 chrX 7839842 7840154 -154759776 + AluSp SINE Alu 1 313 0 828 210 54 114 chrX 7840154 7840333 -154759597 + MLT1G LTR MaLR 212 400 -190 2011 152 16 7 chrX 7840427 7840736 -154759194 + AluJb SINE Alu 1 312 0 227 313 83 28 chrX 7840766 7840910 -154759020 - L2 LINE L2 -187 3085 2934 470 198 78 54 chrX 7841607 7841766 -154758164 - MLT1H LTR MaLR -6 589 382 2360 95 0 0 chrX 7841777 7842073 -154757857 - AluSx SINE Alu -16 296 1 2877 206 64 18 chrX 7843606 7844229 -154755701 - MER82 DNA MER2_type -1 652 1 200 271 0 0 chrX 7844846 7844894 -154755036 + L2 LINE L2 3251 3298 -15 367 353 25 34 chrX 7844945 7845183 -154754747 - L2 LINE L2 -218 3054 2819 1158 190 9 0 chrX 7846078 7846294 -154753636 + MER58A DNA MER1_type 7 224 0 182 323 32 0 chrX 7846298 7846360 -154753570 - L2 LINE L2 -2912 402 339 1747 167 21 7 chrX 7847274 7847561 -154752369 - AluJb SINE Alu -21 291 1 290 237 122 53 chrX 7848720 7848851 -154751079 + MER5B DNA MER1_type 39 178 0 473 124 33 91 chrX 7849328 7849449 -154750481 + L1MA9 LINE L1 5901 6014 -298 1834 234 102 24 chrX 7900136 7900717 -154699213 + MLT1E2 LTR MaLR 1 626 0 318 304 94 7 chrX 7901346 7901484 -154698446 + MIR SINE MIR 95 244 -18 849 146 15 0 chrX 7901937 7902067 -154697863 + FLAM_C SINE Alu 2 133 0 1372 169 92 43 chrX 7903018 7903343 -154696587 + MER58B DNA MER1_type 1 341 0 251 269 0 0 chrX 7903461 7903513 -154696417 + (CA)n Simple_repeat Simple_repeat 1 52 0 2191 70 3 3 chrX 7903640 7903925 -154696005 - AluY SINE Alu 0 311 27 1846 127 29 0 chrX 7904055 7904370 -154695560 - L1MB7 LINE L1 0 6184 5861 242 222 0 0 chrX 7904579 7904624 -154695306 - L2 LINE L2 -2 3270 3226 26 64 0 0 chrX 7904778 7904825 -154695105 + AT_rich Low_complexity Low_complexity 1 47 0 405 291 132 35 chrX 7905338 7905678 -154694252 + L3 LINE CR1 1197 1569 -8 8331 85 5 1 chrX 7906805 7908020 -154691910 - L1P LINE L1 -881 5265 4046 2177 130 3 0 chrX 7908112 7908411 -154691519 + AluJo SINE Alu 1 300 -12 347 327 44 44 chrX 7908489 7908648 -154691282 - L2 LINE L2 -84 3188 3030 423 136 0 12 chrX 7909014 7909095 -154690835 - L1MA5 LINE L1 0 6300 6221 28 71 0 0 chrX 7909127 7909183 -154690747 + AT_rich Low_complexity Low_complexity 1 56 0 411 294 33 50 chrX 7909444 7909624 -154690306 + MIR SINE MIR 78 254 -8 500 303 28 39 chrX 7910647 7910825 -154689105 - MIR3 SINE MIR -17 191 16 997 148 0 0 chrX 7911471 7911620 -154688310 - FAM SINE Alu -35 150 2 308 271 153 0 chrX 7911805 7911923 -154688007 + MLT1J LTR MaLR 327 462 -49 522 229 123 29 chrX 7911993 7912237 -154687693 + HAL1 LINE L1 2241 2507 0 201 74 0 0 chrX 7913872 7913899 -154686031 + (TATAA)n Simple_repeat Simple_repeat 4 30 0 2245 112 0 0 chrX 7914321 7914616 -154685314 - AluSx SINE Alu -17 295 1 644 257 102 0 chrX 7914616 7914803 -154685127 - MIR SINE MIR -44 218 13 249 274 66 47 chrX 7914813 7914919 -154685011 - MIR SINE MIR -138 124 17 201 348 87 43 chrX 7915398 7915651 -154684279 - L2 LINE L2 -9 3263 3000 258 81 0 0 chrX 7916241 7916278 -154683652 + (GGAGAA)n Simple_repeat Simple_repeat 4 40 0 22 56 0 0 chrX 7916705 7916741 -154683189 + AT_rich Low_complexity Low_complexity 1 36 0 1594 153 64 21 chrX 7917523 7917804 -154682126 + AluJb SINE Alu 3 295 -17 2406 82 7 3 chrX 7917807 7918111 -154681819 + AluSp SINE Alu 1 305 -8 436 129 0 24 chrX 7918131 7918216 -154681714 + (GAAAA)n Simple_repeat Simple_repeat 3 85 0 267 339 58 6 chrX 7918229 7918400 -154681530 - MIR SINE MIR -36 226 47 1264 144 22 10 chrX 7919799 7920166 -154679764 - MSTB2 LTR MaLR 0 457 13 1905 203 38 42 chrX 7920573 7921071 -154678859 + MLT1D LTR MaLR 1 496 -9 1116 126 0 18 chrX 7923031 7923239 -154676691 - AluSq SINE Alu 0 326 122 2326 106 0 0 chrX 7923257 7923558 -154676372 - AluSg SINE Alu -9 301 1 444 127 0 0 chrX 7923558 7923629 -154676301 + MSTB2 LTR MaLR 387 457 0 399 281 92 44 chrX 7923991 7924219 -154675711 + L2 LINE L2 3075 3313 0 28 0 0 0 chrX 7924360 7924388 -154675542 + AT_rich Low_complexity Low_complexity 1 28 0 656 136 39 0 chrX 7924388 7924491 -154675439 - U6 snRNA snRNA 0 107 1 1650 241 106 11 chrX 7924872 7925346 -154674584 + LTR40a LTR ERVL 1 519 0 183 231 58 19 chrX 7925588 7925640 -154674290 + L2 LINE L2 3219 3272 0 769 11 0 0 chrX 7926760 7926855 -154673075 + L1MA4A LINE L1 6202 6296 -7 281 198 109 50 chrX 7927134 7927235 -154672695 + MIR SINE MIR 133 239 -23 201 195 0 0 chrX 7928039 7928080 -154671850 + (TA)n Simple_repeat Simple_repeat 1 41 0 2227 98 3 0 chrX 7928080 7928376 -154671554 - AluSx SINE Alu -5 307 11 276 309 34 67 chrX 7928406 7928555 -154671375 + MIR SINE MIR 32 175 -87 347 248 24 24 chrX 7930069 7930194 -154669736 + (TA)n Simple_repeat Simple_repeat 2 126 0 189 0 0 0 chrX 7931623 7931644 -154668286 + (TAA)n Simple_repeat Simple_repeat 2 22 0 25 0 0 0 chrX 7932264 7932289 -154667641 + AT_rich Low_complexity Low_complexity 1 25 0 430 260 164 24 chrX 7935137 7935345 -154664585 - MER112 DNA MER1_type -7 253 17 991 179 36 20 chrX 7935401 7935597 -154664333 + MER58A DNA MER1_type 26 224 0 2063 130 0 33 chrX 7937219 7937520 -154662410 - AluJb SINE Alu -21 291 1 1069 238 5 0 chrX 7938285 7938508 -154661422 + MER58A DNA MER1_type 1 224 0 477 250 64 68 chrX 7938594 7938814 -154661116 - L2 LINE L2 -10 3303 3085 3030 167 4 15 chrX 7938987 7939532 -154660398 - L1MB8 LINE L1 -13 6165 5627 1276 181 115 44 chrX 7939533 7939803 -154660127 - AluJo SINE Alu -23 289 1 354 291 21 43 chrX 7939834 7939975 -154659955 + L2 LINE L2 3176 3313 0 244 297 36 36 chrX 7939999 7940110 -154659820 - L2 LINE L2 0 3313 3203 252 0 0 0 chrX 7940208 7940236 -154659694 + (CA)n Simple_repeat Simple_repeat 2 29 0 329 307 132 19 chrX 7940319 7940871 -154659059 - L2 LINE L2 -187 3085 2485 262 299 90 0 chrX 7941016 7941150 -154658780 + MER117 DNA MER1_type 5 150 -47 258 245 132 9 chrX 7941121 7941227 -154658703 + MER117 DNA MER1_type 39 157 -40 * 398 300 57 4 chrX 7941338 7941568 -154658362 - L2 LINE L2 -1120 2194 1953 1214 206 5 0 chrX 7941575 7941793 -154658137 - MER58A DNA MER1_type -2 222 4 242 267 212 0 chrX 7941871 7942017 -154657913 - L2 LINE L2 -1549 1765 1589 499 264 88 23 chrX 7942329 7942545 -154657385 + MER46C DNA MER2_type 2 231 -107 3947 153 48 7 chrX 7943438 7944163 -154655767 - L1MB7 LINE L1 -1 6183 5429 575 183 80 51 chrX 7945247 7945422 -154654508 - MER5A DNA MER1_type -1 188 9 768 206 65 0 chrX 7946090 7946274 -154653656 - MIR SINE MIR -34 228 33 1923 116 59 33 chrX 7947711 7948014 -154651916 - AluSx SINE Alu -1 311 1 255 184 0 20 chrX 7948022 7948071 -154651859 - FLAM SINE Alu 0 133 86 1441 124 29 5 chrX 7948071 7948280 -154651650 - AluJo SINE Alu -92 220 7 2040 157 7 0 chrX 7948647 7948952 -154650978 - AluJb SINE Alu -5 307 1 1071 172 0 0 chrX 7949790 7949953 -154649977 + FRAM SINE Alu 1 163 -13 2033 128 3 17 chrX 7950038 7950155 -154649775 + AluJo SINE Alu 21 138 -174 2239 120 3 0 chrX 7950155 7950454 -154649476 + AluSx SINE Alu 1 300 -12 2033 128 3 17 chrX 7950454 7950632 -154649298 + AluJo SINE Alu 138 312 0 732 209 35 0 chrX 7951613 7951785 -154648145 + MER5B DNA MER1_type 1 178 0 724 179 8 134 chrX 7952471 7952717 -154647213 - MER58C DNA MER1_type 0 215 1 3026 131 24 24 chrX 7952758 7953155 -154646775 - MER34 LTR ERV1 -26 516 117 2450 87 0 0 chrX 7953155 7953464 -154646466 + AluY SINE Alu 1 309 -2 3026 131 24 24 chrX 7953464 7953570 -154646360 - MER34 LTR ERV1 -424 118 13 2102 129 0 35 chrX 7953571 7953882 -154646048 - AluJb SINE Alu -12 300 1 2303 115 0 3 chrX 7954871 7955184 -154644746 - AluSx SINE Alu 0 312 1 1552 204 8 66 chrX 7955321 7955683 -154644247 - MER58B DNA MER1_type 0 341 1 443 270 75 35 chrX 7956650 7956850 -154643080 - MIR SINE MIR -6 256 49 314 271 115 8 chrX 7956951 7957073 -154642857 - L2 LINE L2 -10 3262 3128 379 142 85 0 chrX 7957250 7957356 -154642574 + CT-rich Low_complexity Low_complexity 3 117 0 1494 179 4 12 chrX 7957364 7957621 -154642309 - AluJo SINE Alu -52 260 6 2572 153 42 0 chrX 7957802 7958252 -154641678 - L1MB5 LINE L1 0 6174 5706 540 217 112 28 chrX 7958274 7958417 -154641513 - L1ME3A LINE L1 -9 6161 6007 35 0 0 0 chrX 7958453 7958488 -154641442 + AT_rich Low_complexity Low_complexity 1 35 0 636 197 8 0 chrX 7958488 7958605 -154641325 - FLAM_C SINE Alu -15 118 1 2168 121 27 0 chrX 7958614 7958911 -154641019 - AluJb SINE Alu -7 305 1 27 0 0 0 chrX 7958920 7958947 -154640983 + AT_rich Low_complexity Low_complexity 1 27 0 2354 115 0 0 chrX 7958947 7959259 -154640671 + AluSx SINE Alu 1 312 0 366 217 24 12 chrX 7960713 7960796 -154639134 - MLT1I LTR MaLR -8 401 318 2339 135 14 3 chrX 7960825 7961187 -154638743 - MER47A DNA MER2_type 0 366 1 386 304 158 0 chrX 7962142 7962300 -154637630 - MER5A DNA MER1_type 0 189 7 226 318 19 28 chrX 7964464 7964571 -154635359 + L3b LINE CR1 1110 1215 -368 656 75 0 0 chrX 7964582 7964662 -154635268 + MADE1 DNA Mariner 1 80 0 198 0 0 0 chrX 7964861 7964883 -154635047 + (TA)n Simple_repeat Simple_repeat 1 22 0 1106 123 0 0 chrX 7965076 7965231 -154634699 - FRAM SINE Alu -24 152 1 1100 191 10 24 chrX 7965299 7965508 -154634422 - MER20 DNA MER1_type -13 206 1 2150 119 10 0 chrX 7965711 7966006 -154633924 - AluSx SINE Alu -14 298 1 264 226 139 29 chrX 7966144 7966281 -154633649 - L1ME4a LINE L1 -2 6119 5968 254 295 71 18 chrX 7966419 7966531 -154633399 - L2 LINE L2 0 3313 3196 295 299 13 0 chrX 7966948 7967025 -154632905 - L2 LINE L2 -7 3265 3188 1470 158 60 32 chrX 7969339 7969623 -154630307 + AluJo SINE Alu 1 292 -20 1145 175 38 0 chrX 7970453 7970664 -154629266 + MER20 DNA MER1_type 1 219 0 833 178 10 56 chrX 7970937 7971134 -154628796 - MER5A DNA MER1_type -1 188 1 468 35 0 0 chrX 7972257 7972315 -154627615 + (TG)n Simple_repeat Simple_repeat 2 59 0 180 0 0 0 chrX 7972550 7972570 -154627360 + (TTTAA)n Simple_repeat Simple_repeat 1 20 0 6678 77 34 1 chrX 7972570 7974027 -154625903 - L1PA10 LINE L1 -18 6150 4666 9368 123 8 14 chrX 7974027 7975499 -154624431 + L1P LINE L1 2661 4123 -2023 2113 167 53 7 chrX 7975484 7975897 -154624033 - L1MB7 LINE L1 -28 6156 5725 * 1755 101 57 10 chrX 7975913 7976210 -154623720 - L1MA3 LINE L1 0 6305 5995 206 295 45 62 chrX 7976210 7976322 -154623608 - MIR SINE MIR -63 145 36 1176 154 18 32 chrX 7976824 7977044 -154622886 + MER20 DNA MER1_type 3 219 0 347 121 0 0 chrX 7977289 7977347 -154622583 - L1MA2 LINE L1 0 6304 6247 907 149 0 0 chrX 7977349 7977367 -154622563 - L1MA2 LINE L1 -21 6283 6266 4339 28 0 0 chrX 7977367 7977867 -154622063 - L1PA5 LINE L1 -9 6145 5646 907 149 0 0 chrX 7977867 7977989 -154621941 - L1MA2 LINE L1 -37 6267 6143 * 1086 176 0 5 chrX 7977983 7978193 -154621737 - L1MB7 LINE L1 -755 5391 5183 3565 129 24 18 chrX 7978673 7979270 -154620660 - L1MC2 LINE L1 -38 6306 5707 815 279 131 48 chrX 7979383 7979493 -154620437 - L1MC4 LINE L1 -371 7671 7572 319 137 0 0 chrX 7979493 7979544 -154620386 - L1PA16 LINE L1 -9 6157 6107 815 279 131 48 chrX 7979544 7979955 -154619975 - L1MC4 LINE L1 -470 7572 7082 270 360 54 9 chrX 7980639 7980750 -154619180 + MER91C DNA MER1_type 1 116 -24 592 257 94 18 chrX 7981051 7981399 -154618531 - MLT1J2 LTR MaLR -23 427 24 330 256 169 79 chrX 7982964 7983319 -154616611 - MLT1J LTR MaLR 0 511 125 587 238 331 58 chrX 7986160 7986504 -154613426 - L2 LINE L2 -308 3005 2756 2362 88 0 7 chrX 7986504 7986800 -154613130 + AluSx SINE Alu 2 295 -17 587 238 331 58 chrX 7986800 7986868 -154613062 - L2 LINE L2 -557 2756 2708 2135 139 21 3 chrX 7986868 7987206 -154612724 + MER2 DNA MER2_type 1 344 0 587 238 331 58 chrX 7987206 7987427 -154612503 - L2 LINE L2 -605 2708 2199 2311 121 0 3 chrX 7987486 7987799 -154612131 - AluSx SINE Alu 0 312 1 352 306 25 50 chrX 7987870 7988069 -154611861 + MIR SINE MIR 48 241 -21 1926 141 13 20 chrX 7989547 7989846 -154610084 + AluJo SINE Alu 1 297 -15 232 316 10 41 chrX 7990100 7990198 -154609732 + MER5A DNA MER1_type 10 104 -85 723 146 184 13 chrX 7990484 7990642 -154609288 - MER20 DNA MER1_type -6 213 29 1015 173 8 130 chrX 7991172 7991426 -154608504 + MER58A DNA MER1_type 2 224 0 467 240 55 9 chrX 7991814 7991974 -154607956 - MER5B DNA MER1_type -10 179 1 812 246 11 0 chrX 7992110 7992297 -154607633 + MER5A DNA MER1_type 1 189 0 2220 159 109 17 chrX 7994486 7994952 -154604978 + MER34 LTR ERV1 1 509 -33 520 267 8 8 chrX 7995365 7995496 -154604434 + MIR SINE MIR 20 150 -112 1360 209 118 34 chrX 7995561 7995968 -154603962 + MLT1J1 LTR MaLR 1 441 -5 665 227 101 45 chrX 7996006 7996204 -154603726 - MER63A DNA MER1_type -1 209 1 833 218 122 48 chrX 7996666 7996937 -154602993 - LTR16C LTR ERVL 0 491 201 2187 175 66 84 chrX 7997311 7997694 -154602236 + MLT1D LTR MaLR 1 374 -131 18653 27 3 0 chrX 7997694 8000628 -154599302 - L1PA4 LINE L1 -3 6152 3206 2187 175 66 84 chrX 8000628 8000758 -154599172 + MLT1D LTR MaLR 374 505 0 509 310 41 29 chrX 8001257 8001502 -154598428 - MIR SINE MIR 0 262 15 749 136 27 0 chrX 8002032 8002142 -154597788 + MER20 DNA MER1_type 1 113 -106 1877 206 17 49 chrX 8002142 8002614 -154597316 - MLT1C LTR MaLR 0 467 11 289 183 24 49 chrX 8002600 8002682 -154597248 + MER20 DNA MER1_type 88 167 -52 * 599 207 9 0 chrX 8003129 8003240 -154596690 - MER58 DNA MER1_type 0 2420 2309 353 231 0 0 chrX 8003707 8003772 -154596158 - MER58 DNA MER1_type -321 65 1 243 174 0 0 chrX 8005373 8005427 -154594503 + L1M4c LINE L1 2458 2511 -3871 299 288 25 0 chrX 8005754 8005829 -154594101 - MLT1K LTR MaLR -72 516 440 319 311 67 20 chrX 8005829 8006108 -154593822 - LTR16C LTR ERVL 0 491 175 409 260 133 46 chrX 8006380 8006576 -154593354 - MLT1K LTR MaLR -160 428 216 425 303 161 19 chrX 8006778 8007039 -154592891 + LTR16A LTR ERVL 145 442 -8 1797 84 0 0 chrX 8008351 8008589 -154591341 - L1PA10 LINE L1 -12 6156 5919 3010 114 11 0 chrX 8008589 8009026 -154590904 + L1P LINE L1 3934 4375 -1771 474 65 0 0 chrX 8010465 8010527 -154589403 + (CA)n Simple_repeat Simple_repeat 2 63 0 582 285 75 69 chrX 8010652 8010985 -154588945 + MLT1I LTR MaLR 71 405 -4 324 0 0 0 chrX 8011470 8011506 -154588424 + (CA)n Simple_repeat Simple_repeat 1 36 0 1058 249 198 8 chrX 8011858 8012236 -154587694 + MLT1J2 LTR MaLR 1 450 0 1088 250 106 66 chrX 8012545 8012869 -154587061 + MLT1H1 LTR MaLR 17 347 -208 2313 110 0 3 chrX 8012869 8013169 -154586761 - AluSx SINE Alu -3 309 11 1088 250 106 66 chrX 8013169 8013387 -154586543 + MLT1H1 LTR MaLR 347 555 0 1557 133 0 0 chrX 8013589 8013807 -154586123 - AluSg/x SINE Alu -12 300 83 205 316 18 0 chrX 8014760 8014817 -154585113 + (TCCA)n Simple_repeat Simple_repeat 4 61 0 2010 176 113 0 chrX 8015288 8015668 -154584262 - MSTB LTR MaLR -3 423 1 2274 93 0 17 chrX 8016100 8016402 -154583528 + AluSx SINE Alu 1 297 -15 1574 205 15 82 chrX 8016551 8016942 -154582988 + MLT1A1 LTR MaLR 1 365 0 201 289 31 72 chrX 8017936 8018033 -154581897 + L2 LINE L2 2619 2711 -603 2542 222 42 29 chrX 8018073 8018691 -154581239 + MLT1E2 LTR MaLR 1 626 0 293 265 77 61 chrX 8019350 8019531 -154580399 + HAL1 LINE L1 2319 2502 -5 935 139 0 26 chrX 8021613 8021764 -154578166 + MER6B DNA MER2_type 1 147 -63 349 302 94 6 chrX 8021887 8022046 -154577884 + MIR3 SINE MIR 29 201 -7 1852 177 0 16 chrX 8022138 8022455 -154577475 - AluJb SINE Alu 0 312 1 306 206 137 14 chrX 8022472 8022618 -154577312 + MER113 DNA MER1_type? 4 167 -354 544 235 87 37 chrX 8022764 8022951 -154576979 + L1M2 LINE L1 1608 1995 -4221 349 262 64 40 chrX 8023163 8023365 -154576565 - ERVL LTR ERVL -3315 2449 2243 2224 64 3 3 chrX 8023866 8024149 -154575781 + L1PB1 LINE L1 5862 6144 -7 1931 250 68 46 chrX 8025044 8025691 -154574239 + MER21B LTR ERV1 98 758 -105 1560 146 15 116 chrX 8025853 8026181 -154573749 + AluJb SINE Alu 1 295 -17 1954 154 113 10 chrX 8026696 8027086 -154572844 - MLT1D LTR MaLR 0 505 76 1211 213 47 52 chrX 8027087 8027124 -154572806 - MLT2B2 LTR ERVL 0 515 479 306 0 0 0 chrX 8027124 8027158 -154572772 + (GA)n Simple_repeat Simple_repeat 2 35 0 * 345 47 0 0 chrX 8027157 8027200 -154572730 + (TG)n Simple_repeat Simple_repeat 1 43 0 1211 213 47 52 chrX 8027158 8027505 -154572425 - MLT2B2 LTR ERVL -36 479 175 378 192 13 46 chrX 8027509 8027660 -154572270 + CT-rich Low_complexity Low_complexity 3 148 0 284 306 37 19 chrX 8028865 8028973 -154570957 - MER5A DNA MER1_type -41 148 39 322 306 120 24 chrX 8029135 8029344 -154570586 - MIR SINE MIR -6 256 28 333 253 95 0 chrX 8030063 8030158 -154569772 + LTR33A LTR ERVL 269 372 -151 2437 121 44 22 chrX 8030176 8030588 -154569342 - MSTB LTR MaLR -5 421 1 506 211 99 37 chrX 8030588 8030746 -154569184 + LTR33A LTR ERVL 17 184 -339 240 213 160 11 chrX 8031216 8031310 -154568620 + L2 LINE L2 3206 3313 0 1481 184 178 63 chrX 8032255 8032417 -154567513 - L1MD2 LINE L1 -13 6346 6204 432 0 0 0 chrX 8032417 8032465 -154567465 + (TG)n Simple_repeat Simple_repeat 2 49 0 1481 184 178 63 chrX 8032465 8032780 -154567150 - L1MD2 LINE L1 -155 6204 5814 592 329 47 22 chrX 8033054 8033373 -154566557 - LTR16C LTR ERVL -16 475 149 304 54 0 0 chrX 8033707 8033744 -154566186 - tRNA-Val-GTG tRNA tRNA -39 37 1 31 0 0 0 chrX 8033838 8033869 -154566061 + AT_rich Low_complexity Low_complexity 1 31 0 265 262 107 8 chrX 8034071 8034193 -154565737 + L2 LINE L2 3166 3299 -14 1086 221 74 125 chrX 8034751 8035303 -154564627 - MLT1H1 LTR MaLR 0 555 32 201 121 0 0 chrX 8035494 8035527 -154564403 + (GA)n Simple_repeat Simple_repeat 2 34 0 523 212 126 81 chrX 8035820 8036018 -154563912 + MIR SINE MIR 53 259 -3 344 267 17 25 chrX 8038676 8038796 -154561134 - MIR SINE MIR -9 253 135 2254 156 54 12 chrX 8038810 8039275 -154560655 - L1MB7 LINE L1 -20 6164 5682 2093 143 10 56 chrX 8039294 8039686 -154560244 - MLT1A2 LTR MaLR 0 374 1 291 364 9 9 chrX 8039695 8039805 -154560125 + MIR SINE MIR 5 114 -148 193 245 20 0 chrX 8039938 8039987 -154559943 + L2 LINE L2 3264 3313 0 278 303 285 18 chrX 8040001 8040166 -154559764 + MIR SINE MIR 51 259 -3 1375 137 12 4 chrX 8041281 8041522 -154558408 + L1MB3 LINE L1 5939 6181 -2 245 315 0 0 chrX 8041528 8041617 -154558313 + HsTC2 DNA Tc2 779 867 -1031 335 294 67 73 chrX 8041883 8041961 -154557969 + HsTC2 DNA Tc2 1132 1209 -689 1028 118 10 98 chrX 8041961 8042036 -154557894 + MER5A DNA MER1_type 2 82 -107 2143 118 14 0 chrX 8042036 8042332 -154557598 - AluSx SINE Alu -12 300 1 1028 118 10 98 chrX 8042332 8042459 -154557471 + MER5A DNA MER1_type 82 186 -3 335 294 67 73 chrX 8042459 8042724 -154557206 + HsTC2 DNA Tc2 1209 1649 -249 2030 123 112 29 chrX 8043450 8043833 -154556097 + MSTA LTR MaLR 7 421 -7 253 200 215 0 chrX 8044030 8044095 -154555835 + L2 LINE L2 3235 3313 0 273 247 0 49 chrX 8044136 8044217 -154555713 + MLT1K LTR MaLR 183 259 -329 643 279 73 21 chrX 8045153 8045386 -154554544 + MIR SINE MIR 8 252 -10 212 0 36 0 chrX 8046366 8046394 -154553536 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 267 312 26 0 chrX 8046610 8046687 -154553243 + LTR67 LTR ERVL 116 194 -363 2308 113 0 3 chrX 8046991 8047292 -154552638 - AluSx SINE Alu -12 300 1 391 309 15 15 chrX 8047517 8047653 -154552277 + MIR SINE MIR 123 258 -4 260 286 60 91 chrX 8047670 8047869 -154552061 - L2 LINE L2 -50 3222 3030 3331 119 47 4 chrX 8048018 8048556 -154551374 - MER34B LTR ERV1 -2 563 3 33 66 0 0 chrX 8048700 8048761 -154551169 + AT_rich Low_complexity Low_complexity 1 61 0 2919 193 96 10 chrX 8049023 8049702 -154550228 + Tigger6a DNA MER2_type 217 953 -130 692 168 32 0 chrX 8049709 8049834 -154550096 - L1PB4 LINE L1 -6 6150 6022 * 5724 110 19 8 chrX 8049832 8050108 -154549822 + L1PA14 LINE L1 4315 4586 -1575 2334 78 0 0 chrX 8050108 8050429 -154549501 - AluY SINE Alu 0 321 1 5724 110 19 8 chrX 8050429 8051969 -154547961 + L1PA14 LINE L1 4586 6152 -9 3917 139 15 71 chrX 8051977 8052295 -154547635 - L1PB4 LINE L1 -122 6034 5700 12410 30 12 0 chrX 8052295 8054560 -154545370 - L1PA4 LINE L1 0 6155 3875 3917 139 15 71 chrX 8054560 8055036 -154544894 - L1PB4 LINE L1 -456 5700 5334 2161 104 3 3 chrX 8055036 8055333 -154544597 - AluSg SINE Alu -13 297 1 3917 139 15 71 chrX 8055333 8055817 -154544113 - L1PB4 LINE L1 -822 5334 4824 641 208 14 0 chrX 8055817 8055961 -154543969 + Tigger6a DNA MER2_type 938 1083 0 25 0 0 0 chrX 8057258 8057283 -154542647 + AT_rich Low_complexity Low_complexity 1 25 0 680 301 27 34 chrX 8058165 8058427 -154541503 - MIR SINE MIR 0 262 3 189 195 0 0 chrX 8058846 8058887 -154541043 + GA-rich Low_complexity Low_complexity 3 43 0 770 148 12 24 chrX 8059457 8059626 -154540304 + CT-rich Low_complexity Low_complexity 3 169 0 1898 154 54 153 chrX 8060054 8060611 -154539319 - MLT1D LTR MaLR 0 505 4 2094 129 0 10 chrX 8061123 8061426 -154538504 - AluSx SINE Alu -9 303 4 336 274 39 10 chrX 8061427 8061529 -154538401 - MIR SINE MIR -70 192 88 1827 169 4 0 chrX 8061727 8062006 -154537924 + AluJb SINE Alu 1 280 -32 215 56 56 0 chrX 8062094 8062130 -154537800 + T-rich Low_complexity Low_complexity 2 39 0 324 305 144 11 chrX 8063082 8063269 -154536661 + MIR SINE MIR 1 212 -50 266 245 233 31 chrX 8063412 8063571 -154536359 - MIR3 SINE MIR 0 208 18 241 326 34 0 chrX 8064495 8064584 -154535346 + MLT1K LTR MaLR 159 250 -338 2306 133 24 87 chrX 8064674 8065169 -154534761 + MER31B LTR ERV1 3 466 0 903 113 75 0 chrX 8065172 8065331 -154534599 + LTR42 LTR ERVL 1 171 -324 732 21 0 196 chrX 8065331 8065474 -154534456 - L1PA5 LINE L1 -191 5963 5849 889 26 70 0 chrX 8065474 8065586 -154534344 + L1PA5 LINE L1 6033 6154 0 1960 118 83 3 chrX 8065691 8066030 -154533900 + LTR42 LTR ERVL 130 495 0 314 277 113 19 chrX 8066048 8066207 -154533723 + MLT1K LTR MaLR 402 575 -13 29 28 0 0 chrX 8067113 8067149 -154532781 + AT_rich Low_complexity Low_complexity 1 36 0 794 167 0 0 chrX 8067149 8067269 -154532661 - FLAM_A SINE Alu -13 120 1 947 55 16 0 chrX 8067279 8067406 -154532524 - L1PA4 LINE L1 0 6155 6027 182 326 0 0 chrX 8067725 8067771 -154532159 + L2 LINE L2 3209 3254 -18 2435 123 17 38 chrX 8068311 8068733 -154531197 - L1MC1 LINE L1 -5 6328 5916 551 275 185 16 chrX 8068945 8069566 -154530364 + L1M4 LINE L1 3812 4537 -1609 2194 199 128 0 chrX 8069566 8070064 -154529866 - MLT1F1 LTR MaLR -4 563 2 603 288 109 8 chrX 8070067 8070542 -154529388 + L1M4 LINE L1 4536 5058 -1088 232 262 0 56 chrX 8070977 8071084 -154528846 + L1M4 LINE L1 5086 5186 -960 3941 263 82 31 chrX 8071195 8073313 -154526617 + L1ME3A LINE L1 77 2272 -3943 425 283 88 19 chrX 8073384 8073607 -154526323 + L1ME3A LINE L1 5264 5498 -733 850 288 21 13 chrX 8073652 8074027 -154525903 + L1ME3A LINE L1 5574 5951 -288 1081 194 58 82 chrX 8074059 8074486 -154525444 - LTR37B LTR ERV1 -7 461 45 878 140 11 182 chrX 8074638 8074902 -154525028 + MER20 DNA MER1_type 1 219 0 1917 169 14 0 chrX 8075078 8075374 -154524556 + AluJo SINE Alu 1 300 -12 378 289 94 13 chrX 8076832 8076991 -154522939 + MIR3 SINE MIR 31 202 -6 859 221 156 58 chrX 8077458 8077907 -154522023 - MLT1E LTR MaLR -100 493 1 251 311 76 17 chrX 8077959 8078078 -154521852 - L2 LINE L2 -4 3268 3143 1110 156 18 58 chrX 8078756 8078981 -154520949 - MER20 DNA MER1_type -3 216 1 202 274 0 41 chrX 8079538 8079611 -154520319 + CT-rich Low_complexity Low_complexity 4 73 0 205 378 55 24 chrX 8080545 8080672 -154519258 - L2 LINE L2 -15 3257 3127 2284 107 3 0 chrX 8082926 8083225 -154516705 + AluSx SINE Alu 2 301 -11 3329 106 10 4 chrX 8083244 8083755 -154516175 + L1MA4 LINE L1 5777 6290 -10 852 224 35 39 chrX 8084594 8084880 -154515050 - L1MA9 LINE L1 -38 6274 5990 7550 29 0 0 chrX 8085863 8087266 -154512664 - L1PA4 LINE L1 -8 6147 4744 193 238 0 48 chrX 8087449 8087491 -154512439 + MER5B DNA MER1_type 4 43 -135 793 268 98 0 chrX 8087497 8087773 -154512157 - MLT1I LTR MaLR -6 403 101 221 330 33 0 chrX 8087874 8087965 -154511965 + MER5B DNA MER1_type 84 177 -1 33 0 0 0 chrX 8088048 8088081 -154511849 + AT_rich Low_complexity Low_complexity 1 33 0 422 253 122 46 chrX 8088984 8089221 -154510709 + MLT1K LTR MaLR 326 580 -8 296 367 133 0 chrX 8090030 8090188 -154509742 - MIR3 SINE MIR -23 185 7 199 341 81 24 chrX 8090207 8090330 -154509600 + L2 LINE L2 2568 2697 -617 818 172 18 24 chrX 8090808 8090977 -154508953 + MER20 DNA MER1_type 52 219 0 279 239 14 0 chrX 8092717 8092788 -154507142 + L1ME4a LINE L1 5544 5615 -506 989 43 0 0 chrX 8092788 8092905 -154507025 + AluY SINE Alu 194 310 -1 307 256 88 60 chrX 8092909 8093226 -154506704 + L1ME4a LINE L1 5608 5933 -188 395 285 31 23 chrX 8093488 8093618 -154506312 - MIR SINE MIR -85 177 47 14819 117 37 13 chrX 8093683 8093738 -154506192 + Tigger1 DNA MER2_type 3 55 -2363 315 19 38 19 chrX 8093738 8093791 -154506139 + (TTTTG)n Simple_repeat Simple_repeat 2 55 0 14819 117 37 13 chrX 8093791 8096093 -154503837 + Tigger1 DNA MER2_type 55 2418 0 180 0 0 0 chrX 8096702 8096722 -154503208 + (A)n Simple_repeat Simple_repeat 1 20 0 2247 130 0 0 chrX 8096773 8097081 -154502849 - AluSx SINE Alu -4 308 1 1269 258 39 53 chrX 8097402 8097890 -154502040 - LTR16C LTR ERVL -10 481 1 367 281 74 15 chrX 8097995 8098198 -154501732 + L1ME3A LINE L1 5549 5763 -399 1256 308 40 4 chrX 8099509 8100013 -154499917 - L1MC4a LINE L1 -1882 5926 5405 244 246 0 0 chrX 8100414 8100471 -154499459 + (TAA)n Simple_repeat Simple_repeat 1 57 0 247 254 0 15 chrX 8100472 8100539 -154499391 + L1MEd LINE L1 456 521 -5598 288 227 73 92 chrX 8100640 8100913 -154499017 + L1MEd LINE L1 685 952 -5167 336 314 33 71 chrX 8100974 8101184 -154498746 + L1ME3A LINE L1 5967 6168 -2 612 249 74 11 chrX 8101200 8101469 -154498461 + L1MEd LINE L1 965 1250 -4869 227 264 0 0 chrX 8101574 8101646 -154498284 + L1MEd LINE L1 1433 1504 -4625 463 276 101 60 chrX 8102151 8102368 -154497562 + L1MEd LINE L1 2216 2441 -3688 621 229 21 47 chrX 8102855 8103091 -154496839 + L1MC5 LINE L1 7184 7413 -548 3739 244 46 37 chrX 8103291 8104776 -154495154 - L2 LINE L2 -2 3311 1816 443 253 51 56 chrX 8104852 8104916 -154495014 + MLT1L LTR MaLR 90 153 -462 1195 139 8 92 chrX 8104916 8105154 -154494776 + MER20 DNA MER1_type 2 219 0 443 253 51 56 chrX 8105154 8105267 -154494663 + MLT1L LTR MaLR 153 266 -349 852 188 67 58 chrX 8105949 8105999 -154493931 + MER63A DNA MER1_type 1 49 -1639 2082 141 3 0 chrX 8105999 8106290 -154493640 + AluSx SINE Alu 1 292 -20 852 188 67 58 chrX 8106290 8106447 -154493483 + MER63A DNA MER1_type 49 210 0 2847 142 21 19 chrX 8106900 8107385 -154492545 - MER66B LTR ERV1 0 486 1 369 0 0 0 chrX 8107451 8107492 -154492438 + (TG)n Simple_repeat Simple_repeat 1 41 0 394 284 0 18 chrX 8107872 8107981 -154491949 + MER81 DNA DNA 8 114 0 433 238 56 134 chrX 8107998 8108498 -154491432 + LTR67 LTR ERVL 95 555 -2 589 122 30 69 chrX 8108936 8108992 -154490938 - L1MD3 LINE L1 0 7995 7938 2197 129 0 7 chrX 8108992 8109301 -154490629 + AluSx SINE Alu 1 307 -5 589 122 30 69 chrX 8109301 8109375 -154490555 - L1MD3 LINE L1 -57 7938 7870 483 200 23 0 chrX 8109875 8109981 -154489949 - MER5A DNA MER1_type -77 112 4 548 227 117 0 chrX 8110152 8110280 -154489650 - MLT1E LTR MaLR -450 143 1 2520 207 65 26 chrX 8111453 8112024 -154487906 - MLT1E LTR MaLR 0 593 1 21 57 0 0 chrX 8112426 8112461 -154487469 + AT_rich Low_complexity Low_complexity 1 35 0 349 274 71 9 chrX 8112758 8112871 -154487059 - MIR SINE MIR -96 166 47 2777 94 8 3 chrX 8113033 8113406 -154486524 + THE1C LTR MaLR 1 375 0 298 319 92 32 chrX 8114313 8114564 -154485366 + MLT1I LTR MaLR 19 284 -125 771 189 31 42 chrX 8114741 8114932 -154484998 - MER5A DNA MER1_type 0 189 1 528 228 13 0 chrX 8115900 8116019 -154483911 + MER5B DNA MER1_type 46 161 -17 359 233 0 150 chrX 8116051 8116113 -154483817 + MER5A DNA MER1_type 14 47 -142 2421 74 3 7 chrX 8116113 8116422 -154483508 + AluSp SINE Alu 1 308 -5 359 233 0 150 chrX 8116422 8116492 -154483438 + MER5A DNA MER1_type 47 126 -63 2167 116 0 0 chrX 8116766 8117109 -154482821 - AluSx SINE Alu 0 312 1 991 156 11 11 chrX 8117249 8117428 -154482502 - MER58A DNA MER1_type 0 224 46 2816 140 81 0 chrX 8117428 8117553 -154482377 + L1MB5 LINE L1 5624 5737 -437 258 105 0 0 chrX 8117553 8117591 -154482339 + (TGAA)n Simple_repeat Simple_repeat 4 41 0 2816 140 81 0 chrX 8117591 8117958 -154481972 + L1MB5 LINE L1 5737 6156 -18 180 0 0 0 chrX 8118744 8118764 -154481166 + (T)n Simple_repeat Simple_repeat 1 20 0 657 261 103 54 chrX 8119350 8119558 -154480372 + MLT1H LTR MaLR 260 485 -64 1201 209 8 4 chrX 8119558 8119793 -154480137 - MER8 DNA MER2_type -2 237 2 657 261 103 54 chrX 8119793 8119845 -154480085 + MLT1H LTR MaLR 485 533 -16 658 269 36 0 chrX 8119897 8120090 -154479840 - MLT1J2 LTR MaLR -245 205 6 23 33 0 0 chrX 8123196 8123226 -154476704 + AT_rich Low_complexity Low_complexity 1 30 0 230 235 296 0 chrX 8123621 8123719 -154476211 - L2 LINE L2 -10 3262 3136 * 291 380 20 0 chrX 8123711 8123811 -154476119 - MIR SINE MIR -77 131 30 23 54 0 0 chrX 8124183 8124220 -154475710 + AT_rich Low_complexity Low_complexity 1 37 0 508 192 253 61 chrX 8124267 8124496 -154475434 - MLT1H LTR MaLR -16 533 261 399 258 115 52 chrX 8124655 8124942 -154474988 - MLT1J LTR MaLR -4 507 203 401 379 67 29 chrX 8125346 8125660 -154474270 + L1MEd LINE L1 533 858 -5261 302 257 134 31 chrX 8125718 8126079 -154473851 + L1MEd LINE L1 926 1184 -4843 417 241 36 72 chrX 8126084 8126250 -154473680 - MLT1J LTR MaLR -325 186 27 440 276 10 0 chrX 8126257 8126355 -154473575 - MIR SINE MIR -160 102 4 822 253 0 36 chrX 8126887 8127108 -154472822 + MER58A DNA MER1_type 12 224 0 22 35 0 0 chrX 8127674 8127703 -154472227 + AT_rich Low_complexity Low_complexity 1 29 0 426 274 113 62 chrX 8129880 8130270 -154469660 + MLT1J2 LTR MaLR 23 432 -18 181 268 18 71 chrX 8130457 8130513 -154469417 + L2 LINE L2 3201 3253 -19 369 0 0 0 chrX 8130645 8130686 -154469244 + (TG)n Simple_repeat Simple_repeat 1 41 0 344 258 124 0 chrX 8130821 8130918 -154469012 - L2 LINE L2 -4 3309 3201 377 258 189 0 chrX 8131077 8131209 -154468721 + MER20 DNA MER1_type 7 163 -56 2622 161 11 30 chrX 8131430 8131896 -154468034 - MSTB2 LTR MaLR 0 457 1 397 153 59 0 chrX 8132041 8132126 -154467804 - MER53 DNA DNA -1 188 99 7463 31 0 2 chrX 8132860 8133996 -154465934 - L1PA4 LINE L1 -9 6146 5011 733 59 20 0 chrX 8133996 8134098 -154465832 + L1PA4 LINE L1 4906 5009 -1137 3471 188 72 38 chrX 8136156 8136980 -154462950 + MER21B LTR ERV1 1 852 -11 563 269 202 29 chrX 8137134 8137510 -154462420 + MLT1H1 LTR MaLR 115 555 0 224 260 60 145 chrX 8137595 8137685 -154462245 + MIR SINE MIR 27 123 -139 21 36 0 0 chrX 8137685 8137713 -154462217 + GC_rich Low_complexity Low_complexity 1 28 0 1305 54 0 18 chrX 8137695 8137861 -154462069 + L1PA4 LINE L1 5993 6155 0 224 260 60 145 chrX 8137713 8137960 -154461970 + MIR SINE MIR 123 209 -53 368 280 8 25 chrX 8139422 8139540 -154460390 + L2 LINE L2 3154 3269 -3 1173 233 5 5 chrX 8140181 8140400 -154459530 - MER58A DNA MER1_type -1 223 5 342 163 0 0 chrX 8140415 8140483 -154459447 + MER5A DNA MER1_type 4 71 -118 1972 147 33 0 chrX 8140491 8140791 -154459139 + AluSx SINE Alu 3 312 0 345 172 0 0 chrX 8140801 8140865 -154459065 + A-rich Low_complexity Low_complexity 5 68 0 187 196 54 36 chrX 8140891 8140947 -154458983 + MER5A DNA MER1_type 125 181 -8 305 210 120 20 chrX 8142153 8142253 -154457677 - MIR SINE MIR -133 129 20 228 325 77 26 chrX 8143470 8143587 -154456343 + L2 LINE L2 3169 3291 -22 939 289 99 46 chrX 8143611 8144196 -154455734 - HAL1 LINE L1 -3 2504 1889 4470 254 60 46 chrX 8144271 8144595 -154455335 - HAL1 LINE L1 -733 1774 1456 2361 86 0 10 chrX 8144595 8144896 -154455034 - AluSc SINE Alu -11 298 1 4470 254 60 46 chrX 8144896 8145810 -154454120 - HAL1 LINE L1 -1051 1456 501 1058 205 38 0 chrX 8145810 8146020 -154453910 - MER20 DNA MER1_type -1 218 1 4470 254 60 46 chrX 8146020 8146528 -154453402 - HAL1 LINE L1 -2006 501 2 623 267 120 4 chrX 8147783 8148008 -154451922 + MLT1I LTR MaLR 157 407 -2 6420 176 31 31 chrX 8148966 8149822 -154450108 - L1MB3 LINE L1 -1 6182 5327 2929 118 29 2 chrX 8149822 8150239 -154449691 - MSTA LTR MaLR 0 428 1 6420 176 31 31 chrX 8150239 8151128 -154448802 - L1MB3 LINE L1 -856 5327 4427 2539 51 3 16 chrX 8151128 8151443 -154448487 - AluY SINE Alu 0 311 1 6420 176 31 31 chrX 8151443 8152032 -154447898 - L1MB3 LINE L1 -1756 4427 3839 209 333 0 0 chrX 8152267 8152324 -154447606 - MIR3 SINE MIR -1 207 151 1872 151 0 31 chrX 8152709 8153026 -154446904 + AluJo SINE Alu 1 307 -5 6148 55 0 11 chrX 8153218 8153976 -154445954 + L1PA5 LINE L1 5361 6110 -44 213 39 0 0 chrX 8153976 8154002 -154445928 + (A)n Simple_repeat Simple_repeat 1 26 0 1918 159 30 0 chrX 8154128 8154429 -154445501 - AluJb SINE Alu -2 310 1 26 0 0 0 chrX 8154429 8154455 -154445475 + AT_rich Low_complexity Low_complexity 1 26 0 302 265 49 20 chrX 8157215 8157317 -154442613 + MIR SINE MIR 21 125 -137 202 216 0 0 chrX 8157606 8157643 -154442287 + (TATATG)n Simple_repeat Simple_repeat 2 38 0 781 211 21 0 chrX 8157858 8157997 -154441933 - MER90 LTR ERV1 0 614 473 2937 163 39 0 chrX 8157997 8158487 -154441443 + MER68 LTR ERV1 1 509 -53 2029 190 47 30 chrX 8158501 8158928 -154441002 - MER90 LTR ERV1 -141 434 1 2467 83 3 3 chrX 8159136 8159449 -154440481 - AluSp SINE Alu 0 313 1 1574 186 19 6 chrX 8160406 8160724 -154439206 + MER33 DNA MER1_type 2 323 -1 984 244 37 9 chrX 8160733 8160950 -154438980 + MER58A DNA MER1_type 1 223 -1 2193 122 0 0 chrX 8160975 8161270 -154438660 - AluSx SINE Alu -17 295 1 21 57 0 0 chrX 8161318 8161353 -154438577 + AT_rich Low_complexity Low_complexity 1 35 0 7766 22 11 0 chrX 8165489 8166381 -154433549 - L1PA4 LINE L1 0 6155 5254 633 278 150 50 chrX 8166678 8166990 -154432940 - MLT1K LTR MaLR -169 419 61 2304 235 72 30 chrX 8166990 8167557 -154432373 + MLT1E LTR MaLR 3 593 0 633 278 150 50 chrX 8167557 8167625 -154432305 - MLT1K LTR MaLR -527 61 1 473 260 7 47 chrX 8167627 8167777 -154432153 - MIR SINE MIR -51 211 68 209 360 22 0 chrX 8168410 8168499 -154431431 + L3 LINE CR1 1482 1572 -5 29 0 0 0 chrX 8168610 8168639 -154431291 + AT_rich Low_complexity Low_complexity 1 29 0 1322 204 14 0 chrX 8169059 8169280 -154430650 + MER58A DNA MER1_type 1 224 0 182 390 21 0 chrX 8169495 8169590 -154430340 - MIR SINE MIR -87 121 25 763 301 64 61 chrX 8169886 8170261 -154429669 + MER115 DNA AcHobo 59 434 -259 1477 198 215 73 chrX 8170500 8171021 -154428909 - MLT1G1 LTR MaLR 0 595 1 297 75 0 0 chrX 8172539 8172579 -154427351 + (TAA)n Simple_repeat Simple_repeat 3 42 0 21 71 0 0 chrX 8172687 8172729 -154427201 + AT_rich Low_complexity Low_complexity 1 42 0 767 229 0 24 chrX 8173079 8173245 -154426685 + MLT1E LTR MaLR 3 164 -429 1868 170 36 36 chrX 8173298 8173663 -154426267 - MLT1A1 LTR MaLR 0 365 1 979 262 59 57 chrX 8173717 8174189 -154425741 - MLT1J1 LTR MaLR -4 442 1 538 313 95 3 chrX 8174233 8174537 -154425393 - ERVL LTR ERVL -1729 4035 3704 404 284 135 59 chrX 8174680 8175042 -154424888 + L2 LINE L2 2218 3313 0 1751 205 15 3 chrX 8175322 8175653 -154424277 - MER58B DNA MER1_type -5 336 2 206 164 194 30 chrX 8176415 8176482 -154423448 - MIR SINE MIR -12 250 173 1284 149 13 53 chrX 8176640 8176868 -154423062 - MER20 DNA MER1_type 0 219 1 342 228 44 9 chrX 8177207 8177321 -154422609 + L1ME4a LINE L1 6001 6118 -3 278 169 15 0 chrX 8179632 8179697 -154420233 + CT-rich Low_complexity Low_complexity 3 68 0 294 350 41 41 chrX 8179698 8179821 -154420109 - L2 LINE L2 -9 3263 3141 260 141 58 16 chrX 8180368 8180489 -154419441 + (TTTAA)n Simple_repeat Simple_repeat 2 127 0 1057 166 37 32 chrX 8180915 8181132 -154418798 + MER20 DNA MER1_type 2 219 0 2932 199 34 27 chrX 8183027 8183614 -154416316 - MLT1E LTR MaLR -2 591 1 2030 78 0 12 chrX 8183747 8184004 -154415926 - AluY SINE Alu -23 288 35 687 189 237 0 chrX 8184166 8184335 -154415595 + MER58C DNA MER1_type 1 209 -6 2262 95 7 3 chrX 8184391 8184686 -154415244 - AluSq SINE Alu -17 296 1 264 307 67 57 chrX 8184699 8184999 -154414931 - L1ME LINE L1 -527 5594 5295 327 332 43 32 chrX 8185261 8185448 -154414482 - L1ME LINE L1 -1338 4808 4620 250 304 92 54 chrX 8185645 8186309 -154413621 - L1ME LINE L1 -2171 3975 3287 538 251 31 18 chrX 8186360 8186377 -154413553 - L1MA10 LINE L1 -1 6333 6317 1515 202 106 0 chrX 8186377 8186699 -154413231 - L1ME1 LINE L1 -6 6160 5805 2101 132 0 0 chrX 8186747 8187043 -154412887 - AluSx SINE Alu -16 296 1 2342 224 94 31 chrX 8187043 8187089 -154412841 - L1M4 LINE L1 -2690 3456 3414 2304 78 0 45 chrX 8187089 8187398 -154412532 - AluSg SINE Alu -15 295 1 2342 224 94 31 chrX 8187398 8188223 -154411707 - L1M4 LINE L1 -2732 3414 2642 1953 157 3 0 chrX 8188223 8188241 -154411689 - AluSx SINE Alu -7 305 289 234 0 0 0 chrX 8188241 8188267 -154411663 + (TCC)n Simple_repeat Simple_repeat 3 28 0 1953 157 3 0 chrX 8188267 8188548 -154411382 - AluSx SINE Alu -23 289 5 2342 224 94 31 chrX 8188548 8188597 -154411333 - L1M4 LINE L1 -3504 2642 2598 1706 201 48 38 chrX 8188597 8188989 -154410941 - MSTD LTR MaLR 0 396 1 2342 224 94 31 chrX 8188989 8189254 -154410676 - L1M4 LINE L1 -3548 2598 2204 25 31 0 0 chrX 8189894 8189926 -154410004 + AT_rich Low_complexity Low_complexity 1 32 0 197 279 188 55 chrX 8190041 8190206 -154409724 - L2 LINE L2 -5 3308 3122 663 299 91 83 chrX 8190372 8191109 -154408821 - L2 LINE L2 -426 2888 2146 255 360 58 58 chrX 8191116 8191377 -154408553 - L2 LINE L2 -1343 1971 1711 1019 211 9 47 chrX 8192351 8192583 -154407347 + MER58A DNA MER1_type 2 224 0 312 91 0 0 chrX 8192627 8192671 -154407259 + (A)n Simple_repeat Simple_repeat 1 44 0 542 211 111 6 chrX 8192900 8193071 -154406859 - MER5A DNA MER1_type 0 189 1 21 0 0 0 chrX 8193763 8193784 -154406146 + AT_rich Low_complexity Low_complexity 1 21 0 917 204 28 9 chrX 8193921 8194132 -154405798 - MER20 DNA MER1_type -4 215 1 780 185 99 6 chrX 8194615 8194777 -154405153 - MER45A DNA AcHobo -1 177 1 997 181 34 15 chrX 8198012 8198216 -154401714 + MER3 DNA MER1_type 1 208 -1 295 271 172 0 chrX 8198358 8198480 -154401450 + MIR SINE MIR 117 259 -3 188 315 0 37 chrX 8198489 8198543 -154401387 - MIR SINE MIR -164 98 47 241 150 0 0 chrX 8199184 8199224 -154400706 + MLT2E LTR ERVL 45 84 -544 2116 100 61 50 chrX 8199522 8199882 -154400048 + THE1B LTR MaLR 1 364 0 697 252 78 18 chrX 8201498 8201521 -154398409 + MIR SINE MIR 2 22 -240 1134 219 0 0 chrX 8201521 8201745 -154398185 + MER58A DNA MER1_type 1 224 0 697 252 78 18 chrX 8201745 8201939 -154397991 + MIR SINE MIR 22 232 -30 185 333 18 0 chrX 8201912 8201969 -154397961 + L2 LINE L2 3251 3308 -5 * 1155 199 4 18 chrX 8202317 8202543 -154397387 - MER58A DNA MER1_type -1 223 1 251 136 12 136 chrX 8202641 8202722 -154397208 + MLT1H LTR MaLR 479 549 0 986 217 17 43 chrX 8204249 8204479 -154395451 - MER58A DNA MER1_type 0 224 1 2087 145 3 0 chrX 8204519 8204830 -154395100 + AluSx SINE Alu 1 312 0 416 307 99 40 chrX 8205464 8205874 -154394056 + L2 LINE L2 2573 2994 -278 208 333 14 0 chrX 8206058 8206127 -154393803 + L2 LINE L2 3244 3313 0 1378 156 15 0 chrX 8206328 8206591 -154393339 + L1MD3 LINE L1 7729 7995 0 639 185 31 87 chrX 8206991 8207186 -154392744 - MER20 DNA MER1_type -33 186 3 520 231 93 56 chrX 8207952 8208168 -154391762 + MLT1H LTR MaLR 26 249 -300 243 88 0 0 chrX 8209047 8209081 -154390849 + (TA)n Simple_repeat Simple_repeat 2 35 0 261 0 0 0 chrX 8209102 8209131 -154390799 + (CA)n Simple_repeat Simple_repeat 2 30 0 23 0 0 0 chrX 8211143 8211166 -154388764 + AT_rich Low_complexity Low_complexity 1 23 0 449 273 134 21 chrX 8211610 8211804 -154388126 - MIR SINE MIR 0 262 47 248 316 86 29 chrX 8212553 8212727 -154387203 + MLT1H LTR MaLR 220 403 -146 2072 129 9 31 chrX 8212866 8213151 -154386779 + AluSx SINE Alu 1 291 -21 252 0 0 0 chrX 8213151 8213179 -154386751 + (TA)n Simple_repeat Simple_repeat 1 28 0 * 438 20 0 0 chrX 8213178 8213229 -154386701 + (CA)n Simple_repeat Simple_repeat 2 52 0 2072 129 9 31 chrX 8213179 8213261 -154386669 + AluSx SINE Alu 291 311 -1 1944 178 140 88 chrX 8213298 8213899 -154386031 + MLT1E1 LTR MaLR 17 648 -6 1163 194 9 0 chrX 8214433 8214649 -154385281 - MER20 DNA MER1_type -1 218 1 842 271 25 60 chrX 8214810 8215213 -154384717 + L1MC4a LINE L1 5524 5912 -1896 262 340 120 5 chrX 8215517 8215708 -154384222 + L2 LINE L2 2608 2820 -494 1210 148 5 49 chrX 8217035 8217258 -154382672 - AluJb SINE Alu -11 301 89 1068 227 28 0 chrX 8218147 8218363 -154381567 - MER58A DNA MER1_type -2 222 1 1217 169 47 0 chrX 8218849 8219062 -154380868 + MER58A DNA MER1_type 2 224 0 515 278 93 49 chrX 8220549 8220937 -154378993 + MLT1L LTR MaLR 200 604 -11 907 174 82 31 chrX 8221013 8221209 -154378721 - MER3 DNA MER1_type 0 209 4 182 31 0 62 chrX 8221854 8221886 -154378044 + (TTTTTG)n Simple_repeat Simple_repeat 2 31 0 180 0 0 0 chrX 8221904 8221924 -154378006 + (CAAAA)n Simple_repeat Simple_repeat 3 22 0 262 333 145 0 chrX 8222065 8222182 -154377748 + MIR SINE MIR 55 188 -74 211 295 129 65 chrX 8223689 8223828 -154376102 - MIR3 SINE MIR -16 192 45 2173 151 15 15 chrX 8223960 8224310 -154375620 + L1MB5 LINE L1 5777 6129 -45 762 142 0 55 chrX 8224310 8224437 -154375493 - FLAM_C SINE Alu -13 120 1 2173 151 15 15 chrX 8224437 8224484 -154375446 + L1MB5 LINE L1 6128 6174 0 333 311 33 0 chrX 8226301 8226423 -154373507 - MIR SINE MIR -6 256 131 207 100 0 0 chrX 8226429 8226459 -154373471 + (TTCA)n Simple_repeat Simple_repeat 4 33 0 26 0 0 0 chrX 8227133 8227159 -154372771 + AT_rich Low_complexity Low_complexity 1 26 0 4994 81 21 11 chrX 8227172 8227888 -154372042 - L1MA1 LINE L1 -7 6295 5573 318 297 0 0 chrX 8227916 8227990 -154371940 - MIR SINE MIR -111 97 24 198 196 22 22 chrX 8228893 8228939 -154370991 + MIR SINE MIR 211 256 -6 893 210 15 25 chrX 8229008 8229208 -154370722 + MER58A DNA MER1_type 27 224 0 2386 85 0 19 chrX 8229392 8229709 -154370221 - AluSx SINE Alu -1 311 1 423 247 82 29 chrX 8232777 8232947 -154366983 - MER112 DNA MER1_type -65 195 17 961 188 34 19 chrX 8232992 8233199 -154366731 + MER58A DNA MER1_type 15 224 0 2040 130 0 33 chrX 8234822 8235121 -154364809 - AluJb SINE Alu -21 291 3 309 306 36 0 chrX 8235330 8235441 -154364489 - L1ME1 LINE L1 -303 5863 5749 3755 209 32 43 chrX 8235441 8235946 -154363984 - L1ME1 LINE L1 -8 6394 5885 2009 139 3 7 chrX 8235946 8236247 -154363683 - AluJb SINE Alu -12 300 1 3755 209 32 43 chrX 8236247 8236556 -154363374 - L1ME1 LINE L1 -517 5885 5574 3223 69 30 7 chrX 8236556 8236990 -154362940 + MLT2A1 LTR ERVL 1 444 0 3755 209 32 43 chrX 8236990 8237660 -154362270 - L1ME1 LINE L1 -828 5574 4936 2483 64 0 0 chrX 8237660 8237958 -154361972 - AluY SINE Alu -13 298 1 3755 209 32 43 chrX 8237958 8238354 -154361576 - L1ME1 LINE L1 -1466 4936 4537 570 286 127 71 chrX 8238438 8238928 -154361002 - L1ME1 LINE L1 -2249 4133 3617 706 244 28 28 chrX 8239053 8239229 -154360701 - MER58C DNA MER1_type -1 214 39 809 141 0 0 chrX 8239396 8239512 -154360418 - FLAM_C SINE Alu -29 114 1 316 260 50 72 chrX 8239984 8240165 -154359765 - L1ME1 LINE L1 -5298 1086 910 2354 188 71 29 chrX 8241007 8241486 -154358444 + MLT1D LTR MaLR 5 503 -2 29 0 0 0 chrX 8241535 8241564 -154358366 + AT_rich Low_complexity Low_complexity 1 29 0 1042 171 59 18 chrX 8241568 8241790 -154358140 + L1MA7 LINE L1 6061 6291 0 2012 146 6 19 chrX 8242449 8242765 -154357165 + AluJb SINE Alu 1 312 0 491 318 42 5 chrX 8243789 8243978 -154355952 - MER117 DNA MER1_type 0 197 2 2258 145 75 6 chrX 8245246 8245697 -154354233 + MER31A LTR ERV1 1 661 0 554 213 0 39 chrX 8245774 8245901 -154354029 + L2 LINE L2 3192 3313 0 1730 147 0 52 chrX 8246071 8246377 -154353553 - AluJb SINE Alu -22 290 1 4468 186 34 17 chrX 8246387 8247714 -154352216 - L1MB7 LINE L1 0 6184 4831 207 309 14 72 chrX 8247849 8247988 -154351942 + MIR SINE MIR 85 215 -47 1908 81 0 0 chrX 8248992 8249227 -154350703 + AluSc SINE Alu 1 235 -74 236 260 52 26 chrX 8250434 8250511 -154349419 + MER91C DNA MER1_type 26 104 -36 382 305 19 32 chrX 8252066 8252220 -154347710 + MIR SINE MIR 13 164 -98 447 198 9 28 chrX 8252223 8252329 -154347601 + MER20 DNA MER1_type 116 219 0 305 259 12 0 chrX 8252334 8252415 -154347515 + MIR SINE MIR 170 251 -11 1236 178 41 18 chrX 8252712 8252931 -154346999 - MER58A DNA MER1_type 0 224 1 230 118 0 0 chrX 8253049 8253083 -154346847 + L2 LINE L2 3268 3301 -12 704 256 154 28 chrX 8254266 8254590 -154345340 - LTR16C LTR ERVL -15 476 112 204 286 0 18 chrX 8255095 8255151 -154344779 + CT-rich Low_complexity Low_complexity 3 57 0 227 250 0 0 chrX 8256042 8256090 -154343840 - L2 LINE L2 -19 3294 3247 779 158 20 43 chrX 8256194 8256479 -154343451 + MER33 DNA MER1_type 1 355 -8 1349 176 52 94 chrX 8257724 8258105 -154341825 - MSTB LTR MaLR -43 383 19 201 363 0 55 chrX 8258152 8258334 -154341596 - L2 LINE L2 -184 3088 2917 1536 218 78 51 chrX 8258554 8258638 -154341292 + MLT1C LTR MaLR 6 86 -381 1916 138 20 10 chrX 8258638 8258934 -154340996 - AluJb SINE Alu -13 299 1 1536 218 78 51 chrX 8258934 8259299 -154340631 + MLT1C LTR MaLR 86 467 0 2426 62 0 0 chrX 8259304 8259593 -154340337 - AluY SINE Alu -22 289 1 1908 178 12 3 chrX 8260522 8260854 -154339076 - MER2 DNA MER2_type -9 336 2 180 0 0 0 chrX 8261186 8261206 -154338724 + (A)n Simple_repeat Simple_repeat 1 20 0 2282 106 0 0 chrX 8261990 8262292 -154337638 - AluSx SINE Alu -10 302 1 582 54 0 0 chrX 8262680 8262754 -154337176 + (TC)n Simple_repeat Simple_repeat 1 74 0 1659 90 40 5 chrX 8264766 8264988 -154334942 + MER30 DNA MER1_type 1 230 0 204 229 0 21 chrX 8264996 8265044 -154334886 + (TTCA)n Simple_repeat Simple_repeat 4 50 0 257 270 0 0 chrX 8265047 8265110 -154334820 - L2 LINE L2 -5 3308 3246 189 0 0 0 chrX 8266757 8266778 -154333152 + (CAA)n Simple_repeat Simple_repeat 1 21 0 332 262 85 38 chrX 8267745 8267901 -154332029 + MIR SINE MIR 21 192 -69 649 271 144 30 chrX 8268056 8268417 -154331513 + LTR16C LTR ERVL 80 481 -10 257 219 49 12 chrX 8270161 8270243 -154329687 - MER117 DNA MER1_type -76 121 37 885 120 0 8 chrX 8270253 8270378 -154329552 + FLAM_C SINE Alu 1 124 -19 28 0 0 0 chrX 8270379 8270407 -154329523 + AT_rich Low_complexity Low_complexity 1 28 0 884 190 0 12 chrX 8270446 8270609 -154329321 + FRAM SINE Alu 12 172 -4 731 225 12 47 chrX 8270734 8270816 -154329114 + MER58 DNA MER1_type 1 84 -2336 2363 77 0 13 chrX 8270816 8271116 -154328814 - AluSp SINE Alu -17 296 1 731 225 12 47 chrX 8271116 8271277 -154328653 + MER58 DNA MER1_type 84 275 -2145 261 180 0 20 chrX 8271259 8271309 -154328621 + MER58 DNA MER1_type 2356 2404 -16 * 697 0 22 11 chrX 8271353 8271442 -154328488 + (GAAA)n Simple_repeat Simple_repeat 3 92 0 480 245 113 0 chrX 8272234 8272393 -154327537 - MER5B DNA MER1_type -1 177 1 1962 131 10 16 chrX 8273055 8273367 -154326563 + AluJo SINE Alu 1 310 -2 315 259 47 12 chrX 8273782 8273867 -154326063 + MER5A DNA MER1_type 1 88 -101 207 0 0 0 chrX 8275077 8275100 -154324830 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 1990 133 0 3 chrX 8275103 8275388 -154324542 - AluJb SINE Alu -28 284 1 785 192 110 11 chrX 8276552 8276734 -154323196 - L1ME2 LINE L1 -2 6162 5963 2301 100 0 3 chrX 8276904 8277214 -154322716 + AluSg SINE Alu 1 309 -1 2057 130 0 3 chrX 8277318 8277618 -154322312 + AluSx SINE Alu 1 299 -13 1487 189 0 34 chrX 8277746 8278043 -154321887 - AluJo SINE Alu -25 287 1 1970 125 125 3 chrX 8278070 8278390 -154321540 - MER46B DNA MER2_type 0 236 3 538 273 107 19 chrX 8280581 8280786 -154319144 - MIR SINE MIR -4 258 36 1531 140 8 51 chrX 8280802 8281141 -154318789 + L1MA5 LINE L1 5655 5970 -321 2456 161 12 5 chrX 8281153 8281557 -154318373 + L1MA6 LINE L1 5894 6300 0 931 192 147 49 chrX 8282125 8282391 -154317539 - MER33 DNA MER1_type -23 301 10 1038 233 18 22 chrX 8282398 8282621 -154317309 - MER58A DNA MER1_type 0 224 3 484 150 183 5 chrX 8282882 8283004 -154316926 + MIR SINE MIR 4 144 -64 191 323 55 16 chrX 8283551 8283678 -154316252 + L2 LINE L2 2835 2966 -306 1902 56 56 0 chrX 8284647 8284917 -154315013 - Harlequin LTR ERV1 -4628 2268 1984 * 6967 66 94 21 chrX 8284907 8285895 -154314035 - Harlequin LTR ERV1 -5555 1341 282 300 135 0 39 chrX 8285896 8285948 -154313982 - Harlequin LTR ERV1 -7509 304 255 * 744 134 0 52 chrX 8285936 8286070 -154313860 - Harlequin LTR ERV1 -7432 381 255 * 2862 80 10 8 chrX 8286041 8286439 -154313491 - Harlequin LTR ERV1 -6497 399 1 1790 194 32 24 chrX 8286439 8286815 -154313115 - LTR2B LTR ERV1 0 490 112 275 248 0 47 chrX 8287303 8287432 -154312498 + MSTB2 LTR MaLR 333 455 -2 2337 107 0 3 chrX 8288098 8288408 -154311522 - AluSx SINE Alu -3 309 1 315 0 0 0 chrX 8288455 8288490 -154311440 + (TG)n Simple_repeat Simple_repeat 2 36 0 492 62 0 0 chrX 8288509 8288573 -154311357 + (GA)n Simple_repeat Simple_repeat 2 65 0 232 338 0 12 chrX 8288622 8288702 -154311228 + L2 LINE L2 2981 3059 -213 1097 126 13 0 chrX 8288779 8288938 -154310992 - AluSg/x SINE Alu -18 294 134 2144 125 0 10 chrX 8288938 8289234 -154310696 - AluSx SINE Alu -19 293 1 228 303 148 8 chrX 8289243 8289365 -154310565 + MIR SINE MIR 124 262 0 182 250 0 24 chrX 8289367 8289451 -154310479 + (CTA)n Simple_repeat Simple_repeat 2 83 0 408 191 0 0 chrX 8290189 8290278 -154309652 + G-rich Low_complexity Low_complexity 1 89 0 439 286 0 41 chrX 8290299 8290446 -154309484 + G-rich Low_complexity Low_complexity 6 146 0 203 324 14 7 chrX 8290587 8290729 -154309201 + (TA)n Simple_repeat Simple_repeat 2 144 0 249 33 0 0 chrX 8291805 8291835 -154308095 + (CA)n Simple_repeat Simple_repeat 2 31 0 198 0 0 0 chrX 8292620 8292642 -154307288 + (A)n Simple_repeat Simple_repeat 1 22 0 414 0 0 0 chrX 8292978 8293024 -154306906 + (TG)n Simple_repeat Simple_repeat 2 47 0 323 294 11 11 chrX 8293139 8293231 -154306699 - L3 LINE CR1 -12 1565 1474 183 80 0 0 chrX 8294141 8294166 -154305764 + (TA)n Simple_repeat Simple_repeat 2 26 0 261 0 0 0 chrX 8294486 8294515 -154305415 + (T)n Simple_repeat Simple_repeat 1 29 0 216 0 0 0 chrX 8294619 8294643 -154305287 + (CA)n Simple_repeat Simple_repeat 2 25 0 21 0 0 0 chrX 8295618 8295639 -154304291 + AT_rich Low_complexity Low_complexity 1 21 0 267 374 20 0 chrX 8297001 8297100 -154302830 - L2 LINE L2 -3 3269 3169 1942 142 42 0 chrX 8297657 8297946 -154301984 - AluSx SINE Alu -11 301 1 1133 175 0 0 chrX 8297958 8298141 -154301789 + AluJb SINE Alu 127 309 -3 7695 51 3 0 chrX 8300218 8301127 -154298803 - Harlequin LTR ERV1 -2633 4263 3352 666 96 19 0 chrX 8301126 8301230 -154298700 - Harlequin LTR ERV1 -4322 2574 2469 * 5111 119 11 7 chrX 8301384 8302121 -154297809 + L1PA16 LINE L1 5426 6165 -1 218 274 16 16 chrX 8302291 8302353 -154297577 - MIR SINE MIR -115 147 86 232 258 15 15 chrX 8304178 8304244 -154295686 + MIR SINE MIR 79 144 -118 2176 178 140 88 chrX 8304874 8305475 -154294455 - MLT1E1 LTR MaLR -6 648 17 365 45 0 0 chrX 8305544 8305588 -154294342 + (TG)n Simple_repeat Simple_repeat 1 44 0 234 0 0 0 chrX 8305594 8305620 -154294310 + (TA)n Simple_repeat Simple_repeat 1 26 0 222 186 31 41 chrX 8305650 8305747 -154294183 + (TTAAA)n Simple_repeat Simple_repeat 3 98 0 * 329 215 23 35 chrX 8305713 8305885 -154294045 + (TTTA)n Simple_repeat Simple_repeat 3 172 0 252 260 35 0 chrX 8305802 8305975 -154293955 + (TTA)n Simple_repeat Simple_repeat 1 179 0 * 22 0 0 0 chrX 8305975 8305997 -154293933 + AT_rich Low_complexity Low_complexity 1 22 0 185 141 64 0 chrX 8305997 8306075 -154293855 + (TA)n Simple_repeat Simple_repeat 1 83 0 70 13 0 0 chrX 8306080 8306157 -154293773 + AT_rich Low_complexity Low_complexity 1 77 0 182 277 36 36 chrX 8306451 8306534 -154293396 + L2 LINE L2 3184 3266 -6 207 194 0 0 chrX 8308024 8308060 -154291870 + (CATA)n Simple_repeat Simple_repeat 4 39 0 25 0 0 0 chrX 8308060 8308085 -154291845 + AT_rich Low_complexity Low_complexity 1 25 0 3377 73 25 2 chrX 8308564 8309002 -154290928 - L1PA8 LINE L1 0 6172 5725 39 38 0 0 chrX 8309256 8309309 -154290621 + AT_rich Low_complexity Low_complexity 1 53 0 1026 197 0 0 chrX 8309309 8309487 -154290443 - AluJ SINE Alu -10 302 125 405 118 47 24 chrX 8309487 8309614 -154290316 + (TA)n Simple_repeat Simple_repeat 2 131 0 951 107 0 0 chrX 8309615 8309737 -154290193 - AluJ SINE Alu -190 122 1 1041 178 53 14 chrX 8310014 8310222 -154289708 - MLT1A1 LTR MaLR -149 216 1 980 251 66 11 chrX 8310298 8310585 -154289345 + LTR16A1 LTR ERVL 155 457 0 2023 122 0 11 chrX 8310673 8311006 -154288924 + AluSx SINE Alu 1 330 0 621 110 0 22 chrX 8311051 8311142 -154288788 + AluJ/FRAM SINE Alu 216 304 -8 2860 156 52 20 chrX 8313935 8314474 -154285456 - L1MD2 LINE L1 -376 5983 5428 188 220 143 22 chrX 8315236 8315302 -154284628 - L2 LINE L2 -314 2958 2877 1485 218 107 22 chrX 8315302 8315429 -154284501 + MSTD LTR MaLR 3 118 -278 1658 171 3 44 chrX 8315429 8315744 -154284186 + AluJb SINE Alu 1 302 -10 1485 218 107 22 chrX 8315744 8315979 -154283951 + MSTD LTR MaLR 118 396 0 188 220 143 22 chrX 8315979 8316003 -154283927 - L2 LINE L2 -395 2877 2857 200 292 0 0 chrX 8316116 8316181 -154283749 + A-rich Low_complexity Low_complexity 1 65 0 523 263 60 30 chrX 8316193 8316459 -154283471 + L1M4 LINE L1 2128 2401 -3745 206 240 67 96 chrX 8317139 8317243 -154282687 - MIR SINE MIR -63 145 45 216 328 107 16 chrX 8317623 8317745 -154282185 - MIR3 SINE MIR -63 145 13 284 222 0 0 chrX 8318012 8318066 -154281864 - MER94 DNA DNA -79 55 2 698 0 12 0 chrX 8318312 8318394 -154281536 + (CA)n Simple_repeat Simple_repeat 2 84 0 2903 216 63 38 chrX 8319307 8320237 -154279693 - L1M4 LINE L1 -1822 4324 3371 1091 162 66 5 chrX 8320522 8320720 -154279210 - L1MD3 LINE L1 -137 7858 7649 180 0 0 0 chrX 8321621 8321641 -154278289 + (A)n Simple_repeat Simple_repeat 1 20 0 2589 139 71 73 chrX 8323810 8324300 -154275630 - LTR2B LTR ERV1 -1 489 1 1845 147 3 3 chrX 8325201 8325517 -154274413 - AluJb SINE Alu 0 316 1 345 301 0 0 chrX 8325541 8325644 -154274286 - L1ME3 LINE L1 -3 6159 6057 1468 123 16 25 chrX 8325833 8326076 -154273854 - AluJo SINE Alu 0 312 72 2126 113 0 3 chrX 8326889 8327195 -154272735 - AluSx SINE Alu 0 306 2 181 328 134 0 chrX 8327196 8327263 -154272667 - L2 LINE L2 -40 3232 3157 3070 73 20 49 chrX 8327352 8327804 -154272126 + MLT2A1 LTR ERVL 1 439 -5 2653 46 0 0 chrX 8330228 8330533 -154269397 - AluY SINE Alu -6 305 1 207 0 0 0 chrX 8330618 8330641 -154269289 + (TG)n Simple_repeat Simple_repeat 2 24 0 1600 171 4 7 chrX 8330673 8330948 -154268982 - AluJb SINE Alu -30 282 9 1244 224 39 77 chrX 8332199 8332681 -154267249 + LTR37B LTR ERV1 1 464 -4 534 264 42 0 chrX 8334248 8334415 -154265515 - MER104 DNA Tc2 0 180 7 201 354 0 13 chrX 8334764 8334843 -154265087 - L2 LINE L2 -4 3268 3191 293 188 16 16 chrX 8334958 8335022 -154264908 - MER20 DNA MER1_type -155 64 1 1612 135 58 8 chrX 8335277 8335568 -154264362 + AluJo SINE Alu 12 315 0 29 70 0 0 chrX 8335897 8335954 -154263976 + AT_rich Low_complexity Low_complexity 1 57 0 22 56 0 0 chrX 8336089 8336125 -154263805 + AT_rich Low_complexity Low_complexity 1 36 0 1778 148 7 28 chrX 8337227 8337511 -154262419 + AluJo SINE Alu 10 287 -25 1711 174 51 18 chrX 8338008 8338341 -154261589 - MER2 DNA MER2_type 0 344 1 528 310 61 31 chrX 8339546 8339775 -154260155 - MIR SINE MIR -1 261 26 361 333 75 11 chrX 8340434 8340608 -154259322 + MIR SINE MIR 13 197 -65 1600 249 40 18 chrX 8340645 8341094 -154258836 + L1ME1 LINE L1 5703 6161 -5 218 31 0 31 chrX 8343092 8343124 -154256806 + (TCCC)n Simple_repeat Simple_repeat 1 31 0 399 262 60 30 chrX 8343988 8344187 -154255743 - L1ME2 LINE L1 0 6166 5968 275 320 91 29 chrX 8345202 8345377 -154254553 + MLT1H LTR MaLR 218 403 -146 310 239 6 80 chrX 8345526 8345689 -154254241 + AluJb SINE Alu 1 151 -151 502 250 22 15 chrX 8346677 8346813 -154253117 + MIR SINE MIR 16 152 -110 747 149 9 0 chrX 8347023 8347137 -154252793 + FLAM_C SINE Alu 1 115 -18 213 312 134 55 chrX 8347655 8347857 -154252073 + L2 LINE L2 3039 3256 -16 270 81 0 0 chrX 8348016 8348053 -154251877 + (GGA)n Simple_repeat Simple_repeat 3 39 0 407 213 189 53 chrX 8349820 8350121 -154249809 - L1ME4a LINE L1 -46 6075 5734 440 272 20 27 chrX 8350517 8350664 -154249266 + MER5A DNA MER1_type 44 189 0 1921 136 3 19 chrX 8351842 8352159 -154247771 + AluSx SINE Alu 1 312 0 779 198 29 12 chrX 8354639 8354811 -154245119 + MER5B DNA MER1_type 4 178 0 183 42 0 0 chrX 8355880 8355904 -154244026 + (TG)n Simple_repeat Simple_repeat 2 25 0 1766 195 29 0 chrX 8355904 8356284 -154243646 - L1M4 LINE L1 -1897 4249 3859 284 250 11 34 chrX 8356964 8357052 -154242878 + AluSq/x SINE Alu 48 133 -170 7204 80 21 14 chrX 8357605 8358615 -154241315 + Harlequin LTR ERV1 4478 5494 -1402 230 312 214 0 chrX 8358807 8358980 -154240950 - L3 LINE CR1 -123 1454 1245 623 284 53 5 chrX 8359057 8359247 -154240683 - MIR SINE MIR -17 245 47 1797 220 27 34 chrX 8359740 8360274 -154239656 + L1MB8 LINE L1 5466 5990 -194 308 290 30 23 chrX 8360392 8360523 -154239407 - L1M4 LINE L1 -6406 136 5 1660 168 17 7 chrX 8360939 8361231 -154238699 + AluJb SINE Alu 1 295 -17 415 304 15 0 chrX 8361786 8361921 -154238009 + L1 LINE L1 3745 3881 -2265 1539 283 29 7 chrX 8361951 8362513 -154237417 - L1M4 LINE L1 -1098 5048 4475 1416 216 47 13 chrX 8362512 8362896 -154237034 + L1 LINE L1 3564 3960 -2186 * 263 221 15 15 chrX 8363104 8363172 -154236758 + L2 LINE L2 2995 3062 -251 1838 157 0 0 chrX 8363202 8363488 -154236442 - AluSx SINE Alu -26 286 1 1778 125 39 4 chrX 8363490 8363771 -154236159 - AluJo SINE Alu -21 291 1 303 239 98 69 chrX 8363814 8363980 -154235950 - MIR3 SINE MIR -5 203 35 249 212 212 0 chrX 8367207 8367273 -154232657 - MIR SINE MIR -150 112 33 794 137 0 68 chrX 8367819 8367965 -154231965 + AluJo SINE Alu 2 137 -175 396 281 67 67 chrX 8367966 8368176 -154231754 - L1MC4a LINE L1 -1812 5996 5787 194 210 32 0 chrX 8368342 8368404 -154231526 + C-rich Low_complexity Low_complexity 5 68 0 237 242 8 17 chrX 8368568 8368688 -154231242 + G-rich Low_complexity Low_complexity 4 122 0 300 188 0 0 chrX 8368827 8368896 -154231034 + G-rich Low_complexity Low_complexity 1 69 0 294 168 37 22 chrX 8369557 8369639 -154230291 + MER53 DNA DNA 1 116 -73 630 243 20 50 chrX 8369956 8370256 -154229674 - AluYa5 SINE Alu -10 291 1 545 124 58 66 chrX 8370256 8370393 -154229537 - L1MB4 LINE L1 -39 6141 6006 333 259 76 76 chrX 8371471 8371656 -154228274 + MER20B DNA MER1_type 5 189 -594 187 336 49 42 chrX 8372355 8372498 -154227432 + L2 LINE L2 2978 3121 -151 595 96 0 21 chrX 8373805 8373899 -154226031 + MER49 LTR ERV1 1 92 -831 426 244 65 32 chrX 8374439 8374562 -154225368 + MIR SINE MIR 16 142 -66 233 324 97 43 chrX 8375676 8375861 -154224069 + L2 LINE L2 2985 3179 -93 222 208 0 0 chrX 8376226 8376274 -154223656 + CT-rich Low_complexity Low_complexity 3 50 0 587 180 49 33 chrX 8377909 8378031 -154221899 - L2 LINE L2 -10 3262 3139 5925 186 33 6 chrX 8378250 8379416 -154220514 + L1P LINE L1 1403 2600 -3546 2124 218 33 22 chrX 8379610 8380069 -154219861 - Harlequin LTR ERV1 -3070 3826 3363 219 258 11 34 chrX 8380104 8380194 -154219736 + CT-rich Low_complexity Low_complexity 1 87 0 237 178 0 0 chrX 8381255 8381300 -154218630 + (CA)n Simple_repeat Simple_repeat 2 46 0 440 265 46 77 chrX 8381488 8381684 -154218246 - MIR SINE MIR -5 257 68 2504 39 0 3 chrX 8381828 8382138 -154217792 - AluY SINE Alu -2 309 1 1635 240 114 23 chrX 8382157 8382720 -154217210 + L1MC4a LINE L1 5326 5939 -1869 297 0 0 0 chrX 8385817 8385850 -154214080 + (TA)n Simple_repeat Simple_repeat 1 33 0 378 94 0 0 chrX 8385850 8385914 -154214016 + (GA)n Simple_repeat Simple_repeat 1 64 0 252 310 69 26 chrX 8386126 8386242 -154213688 - L2 LINE L2 -16 3256 3136 324 309 54 27 chrX 8389288 8389437 -154210493 + MIR SINE MIR 60 212 -50 22 35 0 0 chrX 8392354 8392383 -154207547 + GC_rich Low_complexity Low_complexity 1 29 0 1210 134 31 0 chrX 8393947 8394141 -154205789 - MER20 DNA MER1_type 0 219 20 268 350 56 33 chrX 8394141 8394321 -154205609 + MER5A DNA MER1_type 6 189 0 1189 170 18 22 chrX 8394661 8394884 -154205046 + MLT1A1 LTR MaLR 133 354 -11 1817 148 16 23 chrX 8395076 8395465 -154204465 + AluJb SINE Alu 1 387 0 231 182 0 0 chrX 8395805 8395849 -154204081 - MER116 DNA Mariner -26 54 11 242 323 97 0 chrX 8396250 8396343 -154203587 + MIR SINE MIR 31 132 -76 1575 160 0 26 chrX 8396722 8396990 -154202940 - AluJb SINE Alu -17 295 35 41 58 0 0 chrX 8397124 8397193 -154202737 + AT_rich Low_complexity Low_complexity 1 69 0 1505 160 183 9 chrX 8397202 8397540 -154202390 - MLT2C1 LTR ERVL 0 397 1 27 0 0 0 chrX 8397629 8397656 -154202274 + AT_rich Low_complexity Low_complexity 1 27 0 866 269 69 19 chrX 8397719 8398098 -154201832 + HAL1 LINE L1 1503 1900 -607 261 263 44 18 chrX 8398146 8398260 -154201670 + HAL1 LINE L1 2002 2118 -389 573 284 88 57 chrX 8398276 8398422 -154201508 + MLT1J LTR MaLR 1 141 -370 315 0 0 0 chrX 8398422 8398457 -154201473 + (TTA)n Simple_repeat Simple_repeat 1 35 0 975 161 0 0 chrX 8398458 8398613 -154201317 - FAM SINE Alu -19 156 2 573 284 88 57 chrX 8398613 8398953 -154200977 + MLT1J LTR MaLR 140 504 -7 522 229 123 29 chrX 8398986 8399230 -154200700 + HAL1 LINE L1 2241 2507 0 201 74 0 0 chrX 8400866 8400893 -154199037 + (TATAA)n Simple_repeat Simple_repeat 4 30 0 1903 145 7 10 chrX 8401315 8401611 -154198319 - AluSx SINE Alu -17 295 1 985 244 125 72 chrX 8402187 8403083 -154196847 - L2 LINE L2 -6 3307 2362 328 330 37 0 chrX 8403243 8403352 -154196578 + MIR SINE MIR 2 114 -148 912 230 87 9 chrX 8403391 8403621 -154196309 - MIR SINE MIR 0 262 15 353 187 17 0 chrX 8404385 8404460 -154195470 + MIR SINE MIR 67 143 -65 901 166 12 12 chrX 8404472 8404635 -154195295 - MER5B DNA MER1_type -13 165 3 1031 156 12 0 chrX 8404645 8404812 -154195118 - MER5A DNA MER1_type 0 189 21 1031 174 28 19 chrX 8404826 8405039 -154194891 + MER58 DNA MER1_type 1 215 -2205 276 264 0 0 chrX 8405049 8405102 -154194828 - MER45 DNA AcHobo -125 53 1 1096 233 64 86 chrX 8405148 8405560 -154194370 + MER34 LTR ERV1 1 400 -142 1954 131 0 21 chrX 8405560 8405850 -154194080 - AluJo SINE Alu -14 298 15 1096 233 64 86 chrX 8405850 8405987 -154193943 + MER34 LTR ERV1 400 538 -4 297 0 0 0 chrX 8408896 8408929 -154191001 + (TA)n Simple_repeat Simple_repeat 1 33 0 264 59 0 0 chrX 8408997 8409031 -154190899 + (TG)n Simple_repeat Simple_repeat 1 34 0 1842 101 0 0 chrX 8409523 8409760 -154190170 + AluSg/x SINE Alu 69 305 -5 778 187 18 0 chrX 8409915 8410081 -154189849 + L1MD3 LINE L1 7822 7990 -5 38733 64 12 2 chrX 8410196 8416278 -154183652 + L1PA5 LINE L1 11 6154 0 246 336 53 0 chrX 8417182 8417295 -154182635 + MIR3 SINE MIR 4 122 -86 2346 133 50 0 chrX 8417314 8417698 -154182232 - MER57A LTR ERV1 0 403 1 227 286 31 57 chrX 8418096 8418288 -154181642 + LTR16C LTR ERVL 305 491 0 306 244 12 12 chrX 8420326 8420412 -154179518 + MLT1L LTR MaLR 420 505 -110 525 244 49 44 chrX 8420765 8420970 -154178960 + MLT1J2 LTR MaLR 1 206 -244 245 233 211 0 chrX 8420976 8421109 -154178821 + Zaphod DNA AcHobo 588 748 -3283 326 237 6 0 chrX 8422308 8422400 -154177530 + MER34 LTR ERV1 3 96 -446 1533 204 127 31 chrX 8422460 8422974 -154176956 + LTR48B LTR ERV1 82 644 0 245 276 26 0 chrX 8423005 8423081 -154176849 - L3 LINE CR1 -117 1460 1383 855 284 85 31 chrX 8423085 8423507 -154176423 - MLT1J2 LTR MaLR 0 450 6 605 311 116 19 chrX 8423520 8423736 -154176194 - L3 LINE CR1 -203 1374 1116 1818 169 0 7 chrX 8423736 8424038 -154175892 - AluJb SINE Alu -12 300 1 605 311 116 19 chrX 8424038 8424139 -154175791 - L3 LINE CR1 -461 1116 1026 989 272 106 44 chrX 8424413 8425241 -154174689 + L2 LINE L2 2430 3304 -9 199 255 29 88 chrX 8426450 8426475 -154173455 - L2 LINE L2 -2 3311 3286 2215 119 0 45 chrX 8426475 8426828 -154173102 - MER1B DNA MER1_type 0 337 1 199 255 29 88 chrX 8426828 8426904 -154173026 - L2 LINE L2 -27 3286 3216 535 249 50 50 chrX 8426976 8427177 -154172753 - L2 LINE L2 0 3313 3113 356 254 106 14 chrX 8427212 8427354 -154172576 + HAL1 LINE L1 1643 1797 -710 881 252 95 56 chrX 8427718 8428162 -154171768 + MLT1H LTR MaLR 89 549 0 1577 235 89 25 chrX 8429028 8429466 -154170464 + LTR16C LTR ERVL 26 491 0 324 0 0 0 chrX 8430539 8430575 -154169355 + (A)n Simple_repeat Simple_repeat 1 36 0 461 229 23 0 chrX 8433294 8433425 -154166505 + L1MD2 LINE L1 6196 6329 -30 2398 81 0 3 chrX 8433425 8433722 -154166208 - AluY SINE Alu -14 297 2 2287 101 3 0 chrX 8434133 8434439 -154165491 + AluSp SINE Alu 1 307 -6 248 288 47 88 chrX 8434834 8435004 -154164926 - MIR SINE MIR -70 192 30 1622 160 59 31 chrX 8435219 8435606 -154164324 - L1MB8 LINE L1 0 6178 5781 251 28 28 0 chrX 8435620 8435656 -154164274 + (TTTG)n Simple_repeat Simple_repeat 4 40 0 248 288 47 88 chrX 8435700 8435870 -154164060 + MIR SINE MIR 30 192 -70 2086 124 0 25 chrX 8436265 8436579 -154163351 - AluSq SINE Alu -6 307 2 1486 159 4 0 chrX 8436580 8436832 -154163098 - L1MB8 LINE L1 -392 5786 5534 2133 134 0 0 chrX 8437639 8437938 -154161992 - AluJo SINE Alu -13 299 1 200 233 0 33 chrX 8438188 8438248 -154161682 + GA-rich Low_complexity Low_complexity 4 61 0 183 287 0 111 chrX 8438411 8438519 -154161411 + L3 LINE CR1 681 776 -801 1230 261 69 22 chrX 8438756 8439162 -154160768 + L3b LINE CR1 1102 1526 -57 2899 16 0 0 chrX 8441048 8441366 -154158564 + AluYb8 SINE Alu 1 318 0 186 277 0 0 chrX 8442241 8442288 -154157642 + L2 LINE L2 3264 3310 -3 711 272 100 21 chrX 8443356 8443595 -154156335 + MIR SINE MIR 2 259 -3 2108 139 0 0 chrX 8444055 8444349 -154155581 + AluJb SINE Alu 3 296 -16 1716 149 86 122 chrX 8444360 8444820 -154155110 + MLT1D LTR MaLR 1 441 -64 1714 163 58 4 chrX 8444820 8445096 -154154834 - AluJo SINE Alu -21 291 1 1716 149 86 122 chrX 8445096 8445159 -154154771 + MLT1D LTR MaLR 441 505 0 470 276 70 22 chrX 8445859 8446044 -154153886 + MIR SINE MIR 63 256 -6 251 227 45 0 chrX 8447747 8447835 -154152095 + (TA)n Simple_repeat Simple_repeat 2 93 0 1291 277 109 35 chrX 8450763 8451488 -154148442 + L1MC4a LINE L1 5257 6035 -1773 1016 224 9 9 chrX 8451554 8451777 -154148153 + MER58A DNA MER1_type 1 223 -1 270 282 34 60 chrX 8451892 8452009 -154147921 + MIR SINE MIR 99 212 -50 274 247 14 0 chrX 8452787 8452860 -154147070 + L1ME LINE L1 5589 5662 -459 1529 147 55 22 chrX 8452863 8453187 -154146743 + AluJb SINE Alu 1 333 0 1572 251 109 17 chrX 8453353 8453884 -154146046 - MLT1G1 LTR MaLR -8 587 8 262 146 0 0 chrX 8454009 8454050 -154145880 + L2 LINE L2 3268 3308 -5 895 126 0 16 chrX 8454135 8454262 -154145668 + FLAM_C SINE Alu 2 126 -7 212 122 24 0 chrX 8454426 8454467 -154145463 + T-rich Low_complexity Low_complexity 3 44 0 22 0 0 0 chrX 8454592 8454614 -154145316 + AT_rich Low_complexity Low_complexity 1 22 0 29 0 0 0 chrX 8454852 8454881 -154145049 + AT_rich Low_complexity Low_complexity 1 29 0 1800 174 16 3 chrX 8455374 8455678 -154144252 + AluJo SINE Alu 1 308 -4 2092 114 44 0 chrX 8455881 8456179 -154143751 - AluSx SINE Alu 0 312 2 2255 86 3 29 chrX 8456437 8456819 -154143111 - AluSc SINE Alu 0 374 1 999 220 143 9 chrX 8456858 8457208 -154142722 - L1MB8 LINE L1 -5 6173 5777 4430 83 48 3 chrX 8457349 8457974 -154141956 + MER39B LTR ERV1 1 653 0 405 70 0 0 chrX 8457977 8458034 -154141896 + (CA)n Simple_repeat Simple_repeat 1 57 0 541 167 30 4 chrX 8458577 8458705 -154141225 + LTR49 LTR ERV1 418 595 0 746 333 61 12 chrX 8458726 8459152 -154140778 - LTR16A LTR ERVL 0 450 4 300 274 104 0 chrX 8459667 8459802 -154140128 - L1MB8 LINE L1 -450 5671 5523 1676 172 0 27 chrX 8459833 8460129 -154139801 - AluJb SINE Alu -24 288 1 614 208 0 0 chrX 8460141 8460247 -154139683 - FLAM_A SINE Alu -14 128 23 385 314 99 45 chrX 8460349 8460772 -154139158 - L1MB8 LINE L1 -759 5387 4942 424 49 49 0 chrX 8460909 8460970 -154138960 + LTR23 LTR ERV1 1 64 -373 308 286 61 0 chrX 8461058 8461156 -154138774 + MLT1J2 LTR MaLR 199 302 -148 1883 129 46 40 chrX 8461262 8461633 -154138297 - THE1C LTR MaLR 0 375 3 217 320 0 0 chrX 8461635 8461735 -154138195 + (TA)n Simple_repeat Simple_repeat 2 101 0 464 348 17 6 chrX 8462248 8462429 -154137501 - MIR SINE MIR -48 214 32 437 202 11 0 chrX 8462770 8462859 -154137071 + MIR3 SINE MIR 82 171 -37 816 143 34 11 chrX 8463191 8463366 -154136564 - MER33 DNA MER1_type 0 363 185 686 70 0 0 chrX 8463366 8463452 -154136478 + AluSq SINE Alu 1 86 -226 4409 166 57 56 chrX 8463452 8464522 -154135408 + MER11C LTR ERVK 1 1071 0 1617 101 0 14 chrX 8464522 8464739 -154135191 + AluSq SINE Alu 81 294 -19 719 215 6 0 chrX 8464739 8464900 -154135030 - MER33 DNA MER1_type -264 60 1 1964 164 10 0 chrX 8465304 8465602 -154134328 - AluJb SINE Alu -11 301 1 403 331 7 29 chrX 8465827 8465966 -154133964 - L2 LINE L2 -1 3271 3136 239 263 11 32 chrX 8466095 8466190 -154133740 + MER34 LTR ERV1 41 133 -409 360 253 71 33 chrX 8466471 8466653 -154133277 + MER34 LTR ERV1 353 541 -1 188 263 74 84 chrX 8466682 8466777 -154133153 - L2 LINE L2 -263 3009 2916 3489 113 116 62 chrX 8466866 8467242 -154132688 + LTR8A LTR ERV1 3 357 -370 1928 156 0 7 chrX 8467242 8467537 -154132393 - AluJb SINE Alu -19 293 1 3489 113 116 62 chrX 8467537 8467848 -154132082 + LTR8A LTR ERV1 357 727 0 603 159 139 20 chrX 8467875 8468026 -154131904 + MER33 DNA MER1_type 1 169 -155 4209 137 4 13 chrX 8468026 8468743 -154131187 + MER50 LTR ERV1 1 711 -23 714 97 111 7 chrX 8468744 8468888 -154131042 + MER33 DNA MER1_type 166 324 0 940 123 0 64 chrX 8469912 8470083 -154129847 - MER20 DNA MER1_type -59 160 1 481 191 106 176 chrX 8470734 8471336 -154128594 + MER34 LTR ERV1 1 560 -5 2411 81 3 0 chrX 8471936 8472232 -154127698 - AluSp SINE Alu -16 297 1 2040 150 0 3 chrX 8472380 8472680 -154127250 + AluJb SINE Alu 1 299 -13 1684 198 27 32 chrX 8474839 8475212 -154124718 + MLT1A2 LTR MaLR 4 374 0 2112 114 0 3 chrX 8475494 8475784 -154124146 + AluSx SINE Alu 1 289 -23 407 152 13 0 chrX 8476771 8476850 -154123080 + (TA)n Simple_repeat Simple_repeat 2 81 0 243 0 0 0 chrX 8476850 8476877 -154123053 + (CA)n Simple_repeat Simple_repeat 2 28 0 189 0 0 0 chrX 8476876 8476897 -154123033 + (GA)n Simple_repeat Simple_repeat 2 22 0 * 2198 88 0 0 chrX 8476898 8477172 -154122758 - AluSg1 SINE Alu -35 274 1 336 331 97 6 chrX 8477501 8477676 -154122254 + MIR SINE MIR 66 256 -6 649 272 59 37 chrX 8477690 8477910 -154122020 - MIR SINE MIR 0 262 34 427 390 8 0 chrX 8477963 8478086 -154121844 - L2 LINE L2 0 3272 3149 1106 158 0 36 chrX 8478087 8478283 -154121647 - MER20 DNA MER1_type 0 219 31 2705 88 11 13 chrX 8478462 8478838 -154121092 + THE1C LTR MaLR 1 375 0 383 282 6 70 chrX 8479235 8479391 -154120539 - MLT1J2 LTR MaLR -60 390 245 561 213 128 16 chrX 8479408 8479596 -154120334 - MLT1J1 LTR MaLR -235 211 3 373 182 13 0 chrX 8481066 8481143 -154118787 + MER116 DNA Mariner 1 78 -2 23 54 0 0 chrX 8482582 8482619 -154117311 + AT_rich Low_complexity Low_complexity 1 37 0 220 189 0 0 chrX 8482754 8482791 -154117139 + CT-rich Low_complexity Low_complexity 4 40 0 1075 188 42 14 chrX 8483930 8484143 -154115787 + MER20 DNA MER1_type 1 219 0 3447 151 15 3 chrX 8484227 8484815 -154115115 + MER50 LTR ERV1 10 604 -130 871 137 33 93 chrX 8484816 8484935 -154114995 + MER5A DNA MER1_type 16 122 -67 2425 97 0 0 chrX 8484935 8485245 -154114685 - AluSg SINE Alu 0 310 1 871 137 33 93 chrX 8485245 8485308 -154114622 + MER5A DNA MER1_type 122 187 -2 224 269 60 15 chrX 8485312 8485379 -154114551 + MER5A DNA MER1_type 120 189 0 210 213 0 0 chrX 8485397 8485436 -154114494 + GA-rich Low_complexity Low_complexity 2 43 -5 2028 130 3 17 chrX 8485436 8485735 -154114195 - AluJb SINE Alu -14 298 4 42058 41 1 0 chrX 8487170 8493322 -154106608 + L1PA4 LINE L1 1 6155 0 722 209 0 8 chrX 8493898 8494032 -154105898 + FLAM_A SINE Alu 1 133 0 2261 35 43 3 chrX 8495668 8495950 -154103980 - AluY SINE Alu -18 293 1 1838 144 14 0 chrX 8496180 8496464 -154103466 - AluJb SINE Alu -19 293 6 25 0 0 0 chrX 8497499 8497524 -154102406 + AT_rich Low_complexity Low_complexity 1 25 0 2274 129 0 0 chrX 8497687 8497997 -154101933 + AluSx SINE Alu 1 310 -2 2374 96 0 13 chrX 8499215 8499529 -154100401 - AluSq SINE Alu -3 310 1 613 176 72 93 chrX 8499698 8499891 -154100039 + MER5A DNA MER1_type 1 189 0 198 328 0 0 chrX 8500246 8500310 -154099620 - MIR3 SINE MIR -3 205 142 2359 60 0 0 chrX 8501913 8502239 -154097691 + AluY SINE Alu 1 326 0 543 138 75 0 chrX 8502533 8502627 -154097303 - L1PB4 LINE L1 -7 6149 6049 2621 36 0 10 chrX 8502675 8502983 -154096947 - AluY SINE Alu -5 306 2 621 254 41 53 chrX 8503275 8503594 -154096336 + L1ME2 LINE L1 2184 2498 -3898 * 755 169 26 21 chrX 8503588 8503777 -154096153 + L1ME2 LINE L1 2969 3158 -3057 2259 91 0 28 chrX 8503786 8504105 -154095825 + AluSx SINE Alu 1 310 -2 3245 236 93 35 chrX 8504105 8504965 -154094965 + L1ME2 LINE L1 4001 4810 -1423 2484 55 7 0 chrX 8504965 8505272 -154094658 - AluY SINE Alu -2 309 1 3245 236 93 35 chrX 8505272 8506182 -154093748 + L1ME2 LINE L1 4810 5911 -322 3653 76 0 8 chrX 8506182 8506671 -154093259 + L1PA14 LINE L1 5677 6161 0 3245 236 93 35 chrX 8506671 8507005 -154092925 + L1ME2 LINE L1 5911 6224 -9 2389 99 3 0 chrX 8507210 8507512 -154092418 - AluSp SINE Alu -10 303 1 1104 171 0 6 chrX 8507796 8507972 -154091958 - AluJb SINE Alu -8 304 130 352 170 0 20 chrX 8507982 8508062 -154091868 - AluJ/FLAM SINE Alu -242 60 6 1496 44 0 6 chrX 8508194 8508374 -154091556 - AluY SINE Alu -117 194 16 183 156 0 0 chrX 8509762 8509794 -154090136 + GA-rich Low_complexity Low_complexity 5 36 0 203 278 5 96 chrX 8509822 8510009 -154089921 + GA-rich Low_complexity Low_complexity 6 175 0 353 202 12 0 chrX 8510627 8510711 -154089219 + MER53 DNA DNA 1 85 -104 337 158 66 0 chrX 8510834 8510910 -154089020 + MER53 DNA DNA 105 185 -4 249 108 0 0 chrX 8511060 8511097 -154088833 + (GAAA)n Simple_repeat Simple_repeat 3 39 0 254 231 64 0 chrX 8512394 8512472 -154087458 - MIR SINE MIR -77 185 103 565 264 19 7 chrX 8512677 8512832 -154087098 + MIR SINE MIR 57 213 -49 322 311 108 20 chrX 8516662 8516810 -154083120 + MIR SINE MIR 2 162 -100 231 158 85 61 chrX 8517286 8517368 -154082562 + MIR SINE MIR 179 262 0 227 350 134 29 chrX 8518040 8518317 -154081613 - L2 LINE L2 -90 3182 2877 206 228 0 0 chrX 8518905 8518962 -154080968 + (TTA)n Simple_repeat Simple_repeat 3 59 0 180 364 46 5 chrX 8519190 8519385 -154080545 - L2 LINE L2 -543 2771 2569 192 77 0 0 chrX 8520069 8520095 -154079835 + (TTTC)n Simple_repeat Simple_repeat 3 28 0 432 229 62 0 chrX 8521409 8521505 -154078425 + MER5A DNA MER1_type 4 105 -84 2566 141 14 39 chrX 8521629 8522068 -154077862 - MSTA LTR MaLR 0 428 1 307 299 83 25 chrX 8522118 8522275 -154077655 - MER5A DNA MER1_type 0 189 24 2080 111 4 0 chrX 8522462 8522786 -154077144 + AluSx SINE Alu 3 327 0 2257 128 0 0 chrX 8523093 8523405 -154076525 + AluSx SINE Alu 1 312 0 1660 158 37 11 chrX 8523468 8523741 -154076189 + AluJb SINE Alu 1 280 -32 2480 146 36 5 chrX 8523885 8524296 -154075634 + MSTB LTR MaLR 1 424 -2 609 301 26 0 chrX 8524432 8524625 -154075305 + MIR SINE MIR 3 200 -62 21 0 0 0 chrX 8525975 8525996 -154073934 + AT_rich Low_complexity Low_complexity 1 21 0 189 94 0 0 chrX 8526410 8526442 -154073488 + (T)n Simple_repeat Simple_repeat 1 32 0 242 275 14 0 chrX 8528594 8528663 -154071267 - MIR3 SINE MIR -6 202 133 843 176 59 12 chrX 8529171 8529341 -154070589 - MER5A DNA MER1_type -2 187 10 21 0 0 0 chrX 8529958 8529979 -154069951 + AT_rich Low_complexity Low_complexity 1 21 0 1697 157 7 38 chrX 8530065 8530385 -154069545 - AluJb SINE Alu 0 311 1 2455 52 13 7 chrX 8530589 8530898 -154069032 - AluY SINE Alu 0 311 1 1687 148 44 19 chrX 8532666 8532971 -154066959 + AluJo SINE Alu 5 316 0 258 32 0 0 chrX 8533353 8533384 -154066546 + (CA)n Simple_repeat Simple_repeat 2 32 0 668 280 97 41 chrX 8533525 8533935 -154065995 + MLT1H LTR MaLR 15 549 0 255 287 167 33 chrX 8534117 8534267 -154065663 + MIR SINE MIR 93 262 0 1704 124 0 4 chrX 8534612 8534845 -154065085 - AluJb SINE Alu -80 232 1 707 224 0 0 chrX 8535099 8535246 -154064684 - MER58B DNA MER1_type 0 341 195 7440 41 0 0 chrX 8535274 8536501 -154063429 - L1PA5 LINE L1 0 6154 4930 923 28 14 35 chrX 8537979 8538120 -154061810 + (GAAA)n Simple_repeat Simple_repeat 2 139 0 327 158 40 119 chrX 8538346 8538447 -154061483 + MER20 DNA MER1_type 70 162 -57 1885 157 38 0 chrX 8538748 8539041 -154060889 + AluJb SINE Alu 1 304 -8 2149 87 18 0 chrX 8539423 8539729 -154060201 - AluY SINE Alu 0 311 1 21 110 0 0 chrX 8539937 8540028 -154059902 + AT_rich Low_complexity Low_complexity 1 91 0 234 109 65 0 chrX 8541379 8541425 -154058505 + A-rich Low_complexity Low_complexity 2 50 0 2446 40 10 7 chrX 8542933 8543232 -154056698 + AluY SINE Alu 1 300 -11 2203 81 7 55 chrX 8543609 8543919 -154056011 - AluSq SINE Alu -18 295 1 1668 52 64 0 chrX 8544011 8544244 -154055686 + L1PB1 LINE L1 5534 5781 -370 261 180 0 0 chrX 8544245 8544295 -154055635 + (TG)n Simple_repeat Simple_repeat 2 51 0 2527 103 0 5 chrX 8544313 8544681 -154055249 + L1PB1 LINE L1 5785 6150 -1 223 248 8 39 chrX 8544687 8544699 -154055231 + A-rich Low_complexity Low_complexity 2 13 -113 217 49 0 49 chrX 8544699 8544740 -154055190 + (TTAAA)n Simple_repeat Simple_repeat 3 41 0 223 248 8 39 chrX 8544740 8544856 -154055074 + A-rich Low_complexity Low_complexity 13 126 0 238 179 36 0 chrX 8544895 8544951 -154054979 + (TA)n Simple_repeat Simple_repeat 1 58 0 22 0 0 0 chrX 8545169 8545191 -154054739 + AT_rich Low_complexity Low_complexity 1 22 0 574 276 108 20 chrX 8545507 8545757 -154054173 - L3 LINE CR1 -514 1063 792 2093 145 22 11 chrX 8546157 8546522 -154053408 - MER31-int LTR ERV1 -4400 536 168 26 30 0 0 chrX 8546695 8546728 -154053202 + AT_rich Low_complexity Low_complexity 1 33 0 210 64 21 43 chrX 8547230 8547277 -154052653 + (AGGGGG)n Simple_repeat Simple_repeat 5 50 0 207 325 98 32 chrX 8548555 8548678 -154051252 - L2 LINE L2 -3 3269 3139 1127 153 0 6 chrX 8548694 8548864 -154051066 + AluJb SINE Alu 1 169 -143 230 224 0 52 chrX 8549024 8549082 -154050848 - L2 LINE L2 -17 3296 3242 2198 47 18 4 chrX 8549298 8549607 -154050323 - AluY SINE Alu 0 313 1 1943 106 7 18 chrX 8549607 8549912 -154050018 - AluSq SINE Alu 0 313 38 3555 113 25 7 chrX 8549916 8550480 -154049450 - Tigger3b DNA MER2_type -657 574 1 474 191 38 38 chrX 8550480 8550610 -154049320 + MER34C LTR ERV1 456 585 0 1743 168 135 25 chrX 8550610 8551005 -154048925 + MLT1D LTR MaLR 67 505 0 188 279 49 0 chrX 8551015 8551076 -154048854 - L2 LINE L2 -944 2370 2307 325 328 62 62 chrX 8551212 8551300 -154048630 - L2 LINE L2 -1180 2134 2047 1713 167 46 7 chrX 8551300 8551582 -154048348 - AluJb SINE Alu -18 294 2 325 328 62 62 chrX 8551582 8552008 -154047922 - L2 LINE L2 -1266 2048 1620 2179 114 0 25 chrX 8552061 8552376 -154047554 - AluSx SINE Alu -5 307 1 2178 116 36 18 chrX 8552838 8553167 -154046763 - MER1B DNA MER1_type -2 335 1 475 329 121 26 chrX 8554247 8554560 -154045370 + L2 LINE L2 2397 2739 -575 346 187 93 173 chrX 8554628 8554917 -154045013 + MER5C DNA MER1_type 14 279 -45 809 201 65 0 chrX 8554941 8555110 -154044820 + MER5A DNA MER1_type 10 189 0 630 183 36 29 chrX 8555144 8555281 -154044649 + MER3 DNA MER1_type 72 209 0 32 26 0 0 chrX 8556114 8556153 -154043777 + AT_rich Low_complexity Low_complexity 1 39 0 2469 88 0 0 chrX 8556549 8556856 -154043074 - AluSx SINE Alu -5 307 1 11899 27 6 10 chrX 8556917 8559095 -154040835 + L1PA4 LINE L1 3971 6154 -1 24 85 0 0 chrX 8559454 8559513 -154040417 + AT_rich Low_complexity Low_complexity 1 59 0 252 122 0 0 chrX 8559575 8559616 -154040314 + (TTTTC)n Simple_repeat Simple_repeat 2 42 0 498 75 0 0 chrX 8559616 8559683 -154040247 + (TCCCC)n Simple_repeat Simple_repeat 4 70 0 754 139 47 31 chrX 8559692 8559821 -154040109 - FLAM_C SINE Alu -2 131 1 282 281 165 16 chrX 8560077 8560198 -154039732 - MIR SINE MIR -96 166 28 23 54 0 0 chrX 8560314 8560351 -154039579 + AT_rich Low_complexity Low_complexity 1 37 0 232 365 103 19 chrX 8560505 8560661 -154039269 - L2 LINE L2 0 3272 3104 1007 157 37 42 chrX 8560696 8560913 -154039017 + MER20 DNA MER1_type 1 216 -3 981 108 23 0 chrX 8560959 8561089 -154038841 + AluJb SINE Alu 1 133 -179 265 42 21 42 chrX 8561089 8561137 -154038793 + (CAAAAA)n Simple_repeat Simple_repeat 1 47 0 937 185 0 0 chrX 8561149 8561300 -154038630 + AluJb SINE Alu 129 279 -33 225 0 0 0 chrX 8561300 8561325 -154038605 + (TAAA)n Simple_repeat Simple_repeat 4 28 0 1798 117 51 18 chrX 8561456 8561826 -154038104 + Tigger3(Golem) DNA MER2_type 1 3028 -1 236 318 234 7 chrX 8561967 8562261 -154037669 + L2 LINE L2 2715 3060 -212 740 145 192 47 chrX 8562279 8562474 -154037456 - AluJo SINE Alu 0 305 86 372 279 94 41 chrX 8562481 8562725 -154037205 + LTR33 LTR ERVL 25 281 -240 230 262 24 0 chrX 8562755 8562839 -154037091 + LTR33 LTR ERVL 373 458 -63 366 331 44 7 chrX 8563263 8563399 -154036531 - L2 LINE L2 -7 3265 3125 210 71 0 0 chrX 8563890 8563918 -154036012 + (TG)n Simple_repeat Simple_repeat 1 28 0 925 240 83 0 chrX 8564184 8564388 -154035542 - MER58A DNA MER1_type 0 224 4 21 0 0 0 chrX 8564655 8564676 -154035254 + AT_rich Low_complexity Low_complexity 1 21 0 2093 103 22 3 chrX 8564696 8565015 -154034915 + L1MB7 LINE L1 5841 6165 -19 269 200 0 33 chrX 8565046 8565106 -154034824 + L1ME LINE L1 5551 5608 -513 245 284 95 21 chrX 8565362 8565457 -154034473 - MIR SINE MIR -48 214 113 223 298 235 9 chrX 8565591 8565906 -154034024 + L2 LINE L2 2578 2963 -351 206 256 13 0 chrX 8566032 8566110 -154033820 + CT-rich Low_complexity Low_complexity 4 82 0 217 272 291 10 chrX 8566116 8566219 -154033711 + L2 LINE L2 3141 3272 0 1087 157 13 57 chrX 8567110 8567339 -154032591 - MER20 DNA MER1_type 0 219 1 213 255 41 92 chrX 8570718 8570816 -154029114 + MIR3 SINE MIR 70 162 -46 230 220 0 51 chrX 8570816 8570875 -154029055 + GA-rich Low_complexity Low_complexity 3 58 0 335 264 31 78 chrX 8571905 8572034 -154027896 - MIR SINE MIR -108 154 32 1857 240 103 20 chrX 8572122 8572668 -154027262 + MLT1E LTR MaLR 1 591 -2 21 0 0 0 chrX 8572923 8572944 -154026986 + AT_rich Low_complexity Low_complexity 1 21 0 232 339 126 24 chrX 8573563 8573690 -154026240 + MIR SINE MIR 27 166 -96 5778 114 18 10 chrX 8573695 8574012 -154025918 + L1PA16 LINE L1 4872 5185 -981 2133 113 7 13 chrX 8574012 8574322 -154025608 + AluSc SINE Alu 1 308 -1 5778 114 18 10 chrX 8574322 8575310 -154024620 + L1PA16 LINE L1 5185 6166 0 21 0 0 0 chrX 8575347 8575368 -154024562 + AT_rich Low_complexity Low_complexity 1 21 0 2436 82 0 0 chrX 8575458 8575761 -154024169 - AluSg SINE Alu -7 303 1 3706 194 25 55 chrX 8575775 8577180 -154022750 - L1MCa LINE L1 -4861 1046 337 7789 17 0 2 chrX 8577180 8578390 -154021540 - L1PA3 LINE L1 0 6155 4947 3706 194 25 55 chrX 8578390 8578712 -154021218 - L1MCa LINE L1 -5570 337 7 2317 102 0 3 chrX 8579072 8579367 -154020563 + AluSx SINE Alu 1 294 -18 200 270 132 53 chrX 8579367 8579409 -154020521 + L3 LINE CR1 1079 1116 -461 2521 171 85 43 chrX 8579409 8580007 -154019923 - MLT1E2 LTR MaLR -2 624 2 200 270 132 53 chrX 8580007 8580153 -154019777 + L3 LINE CR1 1116 1282 -295 399 302 60 9 chrX 8580167 8580283 -154019647 - L2 LINE L2 -3 3269 3148 6860 33 8 0 chrX 8580764 8582065 -154017865 + L1PA5 LINE L1 4868 6180 0 4167 138 19 19 chrX 8582105 8582807 -154017123 - L1MB4 LINE L1 -1 6179 5475 261 0 0 0 chrX 8582807 8582836 -154017094 + (TG)n Simple_repeat Simple_repeat 2 30 0 4167 138 19 19 chrX 8582836 8582891 -154017039 - L1MB4 LINE L1 -704 5476 5422 379 265 29 10 chrX 8583105 8583207 -154016723 + L3 LINE CR1 1405 1508 -69 524 273 162 15 chrX 8583433 8583631 -154016299 - MIR SINE MIR -5 257 31 198 171 0 0 chrX 8584586 8584627 -154015303 + CT-rich Low_complexity Low_complexity 1 41 0 336 249 117 121 chrX 8585433 8585690 -154014240 - MIR SINE MIR -6 256 1 1703 175 24 15 chrX 8585970 8586308 -154013622 - MER58B DNA MER1_type 0 341 1 620 174 16 0 chrX 8586521 8586642 -154013288 - L1MD2 LINE L1 0 6359 6237 324 102 0 0 chrX 8586687 8586736 -154013194 + (TG)n Simple_repeat Simple_repeat 1 49 0 2201 186 32 0 chrX 8586761 8587202 -154012728 - L1MD1 LINE L1 -183 6059 5605 200 252 30 126 chrX 8587339 8587474 -154012456 - MIR SINE MIR -63 145 24 617 262 12 18 chrX 8588062 8588226 -154011704 + MER5A DNA MER1_type 11 173 -16 33 0 0 0 chrX 8588274 8588307 -154011623 + AT_rich Low_complexity Low_complexity 1 33 0 959 103 7 0 chrX 8589604 8589750 -154010180 + (TTTC)n Simple_repeat Simple_repeat 2 148 0 2010 118 4 0 chrX 8589750 8590029 -154009901 - AluSx SINE Alu -32 280 1 396 289 191 36 chrX 8590844 8591069 -154008861 - MIR SINE MIR -1 261 2 222 176 0 0 chrX 8591252 8591303 -154008627 + CT-rich Low_complexity Low_complexity 2 52 0 276 91 0 0 chrX 8591315 8591359 -154008571 + (GA)n Simple_repeat Simple_repeat 1 44 0 214 296 0 0 chrX 8593890 8593944 -154005986 + CT-rich Low_complexity Low_complexity 1 54 0 200 94 0 31 chrX 8594109 8594141 -154005789 + (TTTTC)n Simple_repeat Simple_repeat 5 35 0 6622 76 23 3 chrX 8594214 8595612 -154004318 + L1PA11 LINE L1 4754 6174 0 183 80 0 0 chrX 8595725 8595750 -154004180 + (TG)n Simple_repeat Simple_repeat 2 26 0 209 173 39 0 chrX 8595753 8595805 -154004125 + (TA)n Simple_repeat Simple_repeat 2 55 0 400 317 122 35 chrX 8597982 8598212 -154001718 - MIR SINE MIR 0 262 13 325 367 53 20 chrX 8598268 8598513 -154001417 + L2 LINE L2 2422 2674 -640 462 133 0 0 chrX 8598519 8598594 -154001336 + MADE1 DNA Mariner 6 80 0 244 280 156 82 chrX 8598717 8598999 -154000931 + L2 LINE L2 3008 3310 -3 244 276 13 13 chrX 8599004 8599080 -154000850 + CT-rich Low_complexity Low_complexity 1 76 0 433 285 0 0 chrX 8599340 8599463 -154000467 + HsTC2 DNA Tc2 79 201 -1697 267 54 0 0 chrX 8599582 8599619 -154000311 + (GA)n Simple_repeat Simple_repeat 2 38 0 355 277 36 0 chrX 8599650 8599762 -154000168 + HsTC2 DNA Tc2 1017 1132 -766 231 145 26 79 chrX 8599984 8600060 -153999870 + HsTC2 DNA Tc2 1669 1740 -158 377 206 122 8 chrX 8600124 8600255 -153999675 + HsTC2 DNA Tc2 1745 1890 -8 369 309 54 30 chrX 8600942 8601110 -153998820 - MIR SINE MIR -6 256 85 23 54 0 0 chrX 8601613 8601650 -153998280 + AT_rich Low_complexity Low_complexity 1 37 0 22 0 0 0 chrX 8601818 8601840 -153998090 + AT_rich Low_complexity Low_complexity 1 22 0 253 241 96 36 chrX 8602490 8602573 -153997357 + L2 LINE L2 3182 3269 -3 24 0 0 0 chrX 8604738 8604762 -153995168 + AT_rich Low_complexity Low_complexity 1 24 0 258 393 61 0 chrX 8607042 8607205 -153992725 - MIR SINE MIR -56 206 34 2305 109 0 0 chrX 8607824 8608135 -153991795 - AluSx SINE Alu -1 311 1 230 295 162 29 chrX 8608603 8608708 -153991222 + MIR3 SINE MIR 5 123 -85 363 351 8 0 chrX 8608773 8608904 -153991026 - L2 LINE L2 -1 3312 3181 528 300 24 15 chrX 8609510 8609798 -153990132 - MLT1I LTR MaLR 0 409 83 417 324 60 42 chrX 8610180 8610396 -153989534 + L3 LINE CR1 607 826 -751 182 219 203 16 chrX 8610573 8610637 -153989293 + L3 LINE CR1 1068 1143 -434 992 184 87 5 chrX 8610673 8610880 -153989050 - MER58A DNA MER1_type 0 224 1 189 0 0 0 chrX 8611033 8611054 -153988876 + (TTAAA)n Simple_repeat Simple_repeat 4 24 0 217 364 17 17 chrX 8611312 8611430 -153988500 - MIR SINE MIR -61 147 30 988 284 61 77 chrX 8611766 8611843 -153988087 + L2 LINE L2 2537 2614 -699 999 168 42 37 chrX 8611843 8612057 -153987873 - MER20 DNA MER1_type -4 215 1 988 284 61 77 chrX 8612057 8612171 -153987759 + L2 LINE L2 2614 2728 -585 306 0 0 0 chrX 8612171 8612205 -153987725 + (CA)n Simple_repeat Simple_repeat 2 35 0 2806 56 0 6 chrX 8612205 8612564 -153987366 + L1PB1 LINE L1 5793 6149 -2 988 284 61 77 chrX 8612564 8612827 -153987103 + L2 LINE L2 2727 2967 -346 1886 203 35 60 chrX 8612827 8613345 -153986585 + MLT1D LTR MaLR 1 505 0 988 284 61 77 chrX 8613345 8613525 -153986405 + L2 LINE L2 2967 3148 -165 184 244 22 0 chrX 8615287 8615332 -153984598 - L2 LINE L2 -4 3268 3223 1693 187 3 16 chrX 8615431 8615746 -153984184 - AluJb SINE Alu -1 311 1 1481 189 6 6 chrX 8615798 8616110 -153983820 + L1MD3 LINE L1 7474 7785 -210 1105 180 0 3 chrX 8616111 8616322 -153983608 + AluJb SINE Alu 2 283 -29 617 13 0 25 chrX 8616337 8616416 -153983514 + (GAAA)n Simple_repeat Simple_repeat 2 78 0 679 205 78 0 chrX 8616416 8616621 -153983309 + L1MD3 LINE L1 7775 7995 0 214 270 30 20 chrX 8616674 8616774 -153983156 + (CAGAGA)n Simple_repeat Simple_repeat 6 106 0 218 194 48 0 chrX 8618251 8618313 -153981617 + (TCTA)n Simple_repeat Simple_repeat 2 66 0 470 99 33 211 chrX 8618318 8618470 -153981460 - MER20 DNA MER1_type -5 214 90 24 53 0 0 chrX 8618484 8618522 -153981408 + AT_rich Low_complexity Low_complexity 1 38 0 266 289 40 0 chrX 8619602 8619678 -153980252 + L2 LINE L2 3230 3308 -5 636 352 36 0 chrX 8619716 8619935 -153979995 + MIR SINE MIR 19 245 -17 240 312 113 28 chrX 8620155 8620296 -153979634 + MIR SINE MIR 86 238 -24 210 225 0 0 chrX 8620773 8620813 -153979117 + (CTCA)n Simple_repeat Simple_repeat 1 40 0 765 199 8 0 chrX 8622274 8622405 -153977525 + FLAM_A SINE Alu 1 132 -1 2423 152 79 31 chrX 8622430 8622912 -153977018 + MLT1D LTR MaLR 1 505 0 358 291 26 17 chrX 8623036 8623153 -153976777 + MER5A DNA MER1_type 29 146 -43 2146 204 77 54 chrX 8623156 8623416 -153976514 - MLT1E LTR MaLR 0 593 341 830 125 0 21 chrX 8623416 8623560 -153976370 - L1PB1 LINE L1 0 6151 6011 2146 204 77 54 chrX 8623560 8623858 -153976072 - MLT1E LTR MaLR -252 341 22 448 269 174 50 chrX 8624448 8624805 -153975125 + MLT1J2 LTR MaLR 46 446 -4 254 245 157 20 chrX 8625444 8625546 -153974384 - MIR SINE MIR -129 133 18 206 287 61 12 chrX 8625698 8625862 -153974068 + (TATATG)n Simple_repeat Simple_repeat 3 174 0 182 250 163 25 chrX 8625874 8625954 -153973976 - MIR SINE MIR -147 115 25 213 39 0 0 chrX 8626317 8626343 -153973587 + (TA)n Simple_repeat Simple_repeat 2 27 0 198 103 0 0 chrX 8626451 8626480 -153973450 + (TGAA)n Simple_repeat Simple_repeat 1 29 0 888 165 198 0 chrX 8626845 8627027 -153972903 - MER20 DNA MER1_type 0 219 2 259 264 0 66 chrX 8629820 8629911 -153970019 + L2 LINE L2 2545 2629 -685 2287 200 49 9 chrX 8629942 8630473 -153969457 - L1MB8 LINE L1 -13 6165 5614 335 125 0 16 chrX 8630630 8630694 -153969236 - L1MA5 LINE L1 -6 6294 6232 396 343 67 46 chrX 8630724 8631007 -153968923 + L2 LINE L2 2688 2976 -338 572 279 102 26 chrX 8631009 8631235 -153968695 + MIR SINE MIR 7 249 -13 259 389 94 45 chrX 8631223 8631488 -153968442 + L2 LINE L2 2987 3264 -8 * 1080 255 107 41 chrX 8631498 8631985 -153967945 + LTR33 LTR ERVL 1 519 -2 2501 145 20 92 chrX 8632878 8633422 -153966508 - MLT1D LTR MaLR 0 505 1 29 0 0 0 chrX 8633424 8633453 -153966477 + AT_rich Low_complexity Low_complexity 1 29 0 208 274 48 48 chrX 8634177 8634261 -153965669 - L2 LINE L2 -52 3220 3137 601 196 8 15 chrX 8634468 8634601 -153965329 + Charlie7 DNA MER1_type 5 136 -2476 1119 212 83 50 chrX 8634619 8635095 -153964835 - MER39 LTR ERV1 -33 674 1 632 293 94 17 chrX 8635186 8635537 -153964393 + Charlie7 DNA MER1_type 346 723 -1889 235 221 172 0 chrX 8635528 8635650 -153964280 + Charlie7 DNA MER1_type 2416 2558 -54 * 417 39 0 0 chrX 8636980 8637031 -153962899 + (TG)n Simple_repeat Simple_repeat 1 51 0 428 284 25 50 chrX 8638466 8638667 -153961263 + MIR SINE MIR 1 196 -66 217 284 0 63 chrX 8638734 8638829 -153961101 - MIR3 SINE MIR -38 170 82 3855 193 30 42 chrX 8639970 8640865 -153959065 - L1M4 LINE L1 -5149 1393 510 646 319 32 30 chrX 8641054 8641455 -153958475 + MLT1I LTR MaLR 2 403 -6 26734 96 11 14 chrX 8641950 8646051 -153953879 + L1P LINE L1 11 4101 -2045 2149 53 0 0 chrX 8646051 8646316 -153953614 + L1PA6 LINE L1 5889 6154 0 22 56 0 0 chrX 8646597 8646633 -153953297 + AT_rich Low_complexity Low_complexity 1 36 0 2516 122 11 82 chrX 8646690 8647151 -153952779 + MSTC LTR MaLR 1 428 0 323 275 12 69 chrX 8647309 8647469 -153952461 - L1MC4a LINE L1 -1870 5938 5788 2080 105 0 66 chrX 8647698 8648032 -153951898 + AluSx SINE Alu 1 312 0 820 216 18 48 chrX 8648180 8648407 -153951523 - MER74A LTR ERVL 0 558 339 232 262 201 27 chrX 8648446 8648595 -153951335 - MER74B LTR ERVL -395 227 53 2175 229 54 0 chrX 8648595 8649131 -153950799 - L1ME1 LINE L1 -123 6043 5479 266 302 57 19 chrX 8649514 8649620 -153950310 + MLT1J LTR MaLR 378 487 -24 290 330 141 10 chrX 8649940 8650146 -153949784 + MIR SINE MIR 12 244 -18 539 315 25 38 chrX 8650752 8650990 -153948940 + MIR SINE MIR 18 252 -10 * 609 284 37 11 chrX 8650970 8651160 -153948770 - MIR SINE MIR -48 214 20 21 0 0 0 chrX 8651619 8651640 -153948290 + AT_rich Low_complexity Low_complexity 1 21 0 502 208 20 25 chrX 8652004 8652574 -153947356 + (TA)n Simple_repeat Simple_repeat 1 567 0 261 261 29 0 chrX 8652574 8652643 -153947287 + (TATG)n Simple_repeat Simple_repeat 4 74 0 597 165 23 23 chrX 8652644 8652862 -153947068 + (TA)n Simple_repeat Simple_repeat 1 218 0 451 230 60 0 chrX 8653286 8653386 -153946544 + MER81 DNA DNA 1 106 -8 959 281 56 42 chrX 8654446 8654805 -153945125 + LTR16B LTR ERVL 3 366 -98 330 317 17 17 chrX 8656746 8656866 -153943064 + MIR3 SINE MIR 78 197 -11 2174 84 28 0 chrX 8656937 8657221 -153942709 - AluSg SINE Alu -18 292 1 239 173 19 0 chrX 8658788 8658840 -153941090 + (CA)n Simple_repeat Simple_repeat 2 54 0 462 293 96 21 chrX 8658976 8659215 -153940715 + MIR SINE MIR 4 260 -2 353 246 93 0 chrX 8659641 8659759 -153940171 + MER103 DNA DNA 5 133 -33 233 296 17 43 chrX 8659986 8660101 -153939829 + 7SK RNA RNA 10 121 -72 220 297 20 40 chrX 8660294 8660395 -153939535 - MER5A DNA MER1_type -1 188 90 196 304 133 30 chrX 8660295 8660430 -153939500 + MER5A DNA MER1_type 17 165 -24 * 215 336 115 26 chrX 8660450 8660563 -153939367 + MER5B DNA MER1_type 10 132 -46 1060 80 0 7 chrX 8661391 8661541 -153938389 - L1PB1 LINE L1 0 6151 6003 1545 183 123 144 chrX 8661584 8662388 -153937542 - L1MC4a LINE L1 -15 7793 7007 261 111 0 0 chrX 8662538 8662574 -153937356 + Alu SINE Alu 1 36 -266 2113 125 13 0 chrX 8662638 8662943 -153936987 + AluSx SINE Alu 1 309 -3 557 266 8 0 chrX 8663349 8663477 -153936453 - MER58B DNA MER1_type -16 325 197 2408 72 0 0 chrX 8665888 8666181 -153933749 - AluY SINE Alu -18 293 1 324 326 49 56 chrX 8666386 8666530 -153933400 + L2 LINE L2 3115 3257 -15 2428 183 23 2 chrX 8667686 8668173 -153931757 - L1MB7 LINE L1 -19 6165 5669 365 298 16 32 chrX 8668335 8668459 -153931471 + MER5A DNA MER1_type 68 189 0 496 186 20 20 chrX 8668474 8668576 -153931354 + MER5A DNA MER1_type 9 110 -79 4477 125 15 4 chrX 8668594 8669587 -153930343 + L1PA16 LINE L1 4886 5892 -274 690 231 0 66 chrX 8669611 8669793 -153930137 + MER5B DNA MER1_type 5 174 -4 1795 110 140 10 chrX 8669817 8670117 -153929813 - MER1B DNA MER1_type 0 339 1 346 257 23 12 chrX 8670237 8670408 -153929522 + GA-rich Low_complexity Low_complexity 3 175 0 2627 219 53 55 chrX 8670524 8671281 -153928649 - L1ME1 LINE L1 -4 6162 5408 449 278 97 32 chrX 8671350 8671659 -153928271 - L1MC5 LINE L1 -29 7932 7604 1580 11 0 0 chrX 8672187 8672366 -153927564 + L1PA4 LINE L1 5977 6155 0 342 0 0 0 chrX 8672402 8672440 -153927490 + (TG)n Simple_repeat Simple_repeat 2 39 0 957 202 25 15 chrX 8673950 8674148 -153925782 - MER20 DNA MER1_type -14 205 6 1089 264 82 24 chrX 8675505 8676059 -153923871 - L2 LINE L2 -22 3291 2703 826 156 17 165 chrX 8676063 8676300 -153923630 + MER20 DNA MER1_type 1 202 -17 805 294 184 24 chrX 8676300 8676712 -153923218 - L2 LINE L2 -607 2707 2230 297 305 74 68 chrX 8676722 8676912 -153923018 - LTR67 LTR ERVL -10 547 357 1230 272 171 8 chrX 8677184 8677659 -153922271 - L2 LINE L2 -1080 2234 1683 24 53 0 0 chrX 8677722 8677760 -153922170 + AT_rich Low_complexity Low_complexity 1 38 0 315 300 0 30 chrX 8677897 8677997 -153921933 - L1MC4 LINE L1 -1342 6700 6604 7736 177 25 4 chrX 8678551 8680054 -153919876 - L1 LINE L1 -869 5277 3743 703 261 48 0 chrX 8680106 8680313 -153919617 + MER46C DNA MER2_type 113 329 -9 2067 119 0 33 chrX 8680982 8681285 -153918645 + AluSx SINE Alu 1 293 -19 23 68 0 0 chrX 8682900 8682944 -153916986 + AT_rich Low_complexity Low_complexity 1 44 0 227 241 13 57 chrX 8684160 8684318 -153915612 - L1M4c LINE L1 -3819 2563 2413 21 57 0 0 chrX 8684706 8684741 -153915189 + AT_rich Low_complexity Low_complexity 1 35 0 643 306 55 55 chrX 8684833 8685235 -153914695 - L1M4c LINE L1 -852 1891 1288 1882 162 94 110 chrX 8685242 8685743 -153914187 - L1MDa LINE L1 -6031 509 17 704 92 0 0 chrX 8686395 8686493 -153913437 - AluSc SINE Alu -211 98 1 1843 274 83 21 chrX 8686841 8687616 -153912314 - HAL1 LINE L1 -396 2111 1289 590 259 156 18 chrX 8687777 8688001 -153911929 + MLT1J2 LTR MaLR 196 450 0 399 253 113 88 chrX 8688001 8688504 -153911426 - HAL1 LINE L1 -1218 1289 774 309 304 122 33 chrX 8688624 8688805 -153911125 - HAL1 LINE L1 -1901 606 410 554 306 41 59 chrX 8689054 8689443 -153910487 - LTR16C LTR ERVL -57 434 53 212 306 116 75 chrX 8690245 8690686 -153909244 + L2 LINE L2 2814 3272 0 846 107 112 56 chrX 8690848 8691026 -153908904 + MER5A DNA MER1_type 2 189 0 907 206 40 0 chrX 8691953 8692152 -153907778 - MER3 DNA MER1_type -1 208 2 191 36 36 0 chrX 8693536 8693564 -153906366 + (TCC)n Simple_repeat Simple_repeat 3 31 0 583 298 30 0 chrX 8693933 8694064 -153905866 + MER91C DNA MER1_type 1 135 -5 344 296 102 9 chrX 8694101 8694209 -153905721 - L2 LINE L2 0 3313 3196 186 324 152 19 chrX 8694702 8694807 -153905123 + L2 LINE L2 3145 3263 -9 1812 132 88 15 chrX 8696905 8697246 -153902684 - THE1C LTR MaLR -9 366 1 899 290 57 44 chrX 8697836 8698294 -153901636 - LTR16B LTR ERVL 0 464 1 3139 195 70 17 chrX 8698457 8699238 -153900692 - MER99 DNA DNA 0 828 6 750 208 3 15 chrX 8699624 8699932 -153899998 - MLT1A2 LTR MaLR 0 374 1 3234 139 17 7 chrX 8700301 8700875 -153899055 - L1MB7 LINE L1 -23 6161 5582 525 247 110 26 chrX 8700945 8701099 -153898831 - MER5B DNA MER1_type -8 170 4 580 306 52 6 chrX 8701392 8701565 -153898365 - MIR SINE MIR -80 182 2 211 241 24 72 chrX 8702353 8702436 -153897494 - L2 LINE L2 -84 3229 3151 482 225 220 17 chrX 8702681 8702854 -153897076 - MIR SINE MIR -25 237 30 257 73 0 24 chrX 8702918 8702959 -153896971 + (TTCA)n Simple_repeat Simple_repeat 1 40 0 199 264 194 0 chrX 8702960 8703032 -153896898 - L2 LINE L2 -14 3299 3214 184 297 47 16 chrX 8703091 8703155 -153896775 - L2 LINE L2 -66 3206 3141 1877 153 7 0 chrX 8703464 8703739 -153896191 + AluJo SINE Alu 20 296 -16 285 318 77 12 chrX 8704804 8704974 -153894956 + L2 LINE L2 1668 1848 -1466 805 281 116 44 chrX 8705617 8705915 -153894015 + L2 LINE L2 1671 2007 -1307 1944 152 7 13 chrX 8705915 8706250 -153893680 + AluSx SINE Alu 1 312 0 805 281 116 44 chrX 8706250 8706357 -153893573 + L2 LINE L2 2007 2105 -1209 1411 169 4 4 chrX 8706374 8706635 -153893295 - L1MB5 LINE L1 0 6174 5914 330 273 13 0 chrX 8706675 8706752 -153893178 + L2 LINE L2 2574 2651 -663 252 0 0 0 chrX 8706778 8706806 -153893124 + (CA)n Simple_repeat Simple_repeat 2 29 0 808 151 78 0 chrX 8706886 8707065 -153892865 - L1MB5 LINE L1 -277 5907 5715 1447 227 127 55 chrX 8707066 8707578 -153892352 + L2 LINE L2 2103 2651 -663 1148 187 9 5 chrX 8708233 8708447 -153891483 + MER20 DNA MER1_type 1 215 -4 416 255 39 39 chrX 8709126 8709279 -153890651 - MIR3 SINE MIR -15 193 41 198 0 0 0 chrX 8710644 8710666 -153889264 + (A)n Simple_repeat Simple_repeat 1 22 0 21 57 0 0 chrX 8711185 8711220 -153888710 + AT_rich Low_complexity Low_complexity 1 35 0 288 200 12 50 chrX 8711640 8711720 -153888210 + L2 LINE L2 3231 3307 -6 193 373 124 17 chrX 8711818 8711995 -153887935 - L3b LINE CR1 -12 1571 1376 180 111 0 0 chrX 8712187 8712214 -153887716 + (CA)n Simple_repeat Simple_repeat 2 28 0 195 303 53 26 chrX 8712402 8712478 -153887452 + L2 LINE L2 2559 2636 -678 7468 32 4 0 chrX 8712723 8714232 -153885698 - L1PA5 LINE L1 -4 6150 4639 26 113 0 0 chrX 8714311 8714435 -153885495 + AT_rich Low_complexity Low_complexity 1 124 0 670 285 84 45 chrX 8715971 8716150 -153883780 + L2 LINE L2 2620 2791 -522 3569 121 21 8 chrX 8716150 8716670 -153883260 - MER1A DNA MER1_type 0 527 1 670 285 84 45 chrX 8716670 8717068 -153882862 + L2 LINE L2 2791 3216 -97 1080 199 14 5 chrX 8717234 8717450 -153882480 - MER58A DNA MER1_type 0 224 7 232 295 0 0 chrX 8718231 8718292 -153881638 - MIR SINE MIR -110 152 92 519 260 78 26 chrX 8718442 8718596 -153881334 + MER5B DNA MER1_type 17 178 0 1320 180 9 0 chrX 8718604 8718826 -153881104 - MER58A DNA MER1_type 0 224 1 353 343 108 5 chrX 8719032 8719245 -153880685 + MIR SINE MIR 12 246 -16 685 281 112 42 chrX 8719869 8720395 -153879535 + MLT1L LTR MaLR 5 567 -48 281 284 136 11 chrX 8720828 8720916 -153879014 - L2 LINE L2 0 3272 3174 1036 182 5 0 chrX 8720942 8721145 -153878785 + MER3 DNA MER1_type 6 209 0 672 292 27 0 chrX 8722609 8722794 -153877136 + MIR SINE MIR 15 204 -58 222 365 48 7 chrX 8723108 8723253 -153876677 - MIR SINE MIR -66 196 46 233 57 29 0 chrX 8723501 8723536 -153876394 + (TTTC)n Simple_repeat Simple_repeat 1 36 0 22431 164 17 13 chrX 8724682 8731206 -153868724 + L1PA11 LINE L1 1 7610 -2 308 272 70 63 chrX 8731695 8731926 -153868004 + MIR3 SINE MIR 4 233 -29 1816 181 7 7 chrX 8732421 8732720 -153867210 - AluJb SINE Alu -13 299 1 1976 171 131 11 chrX 8733149 8733600 -153866330 + MLT1D LTR MaLR 1 505 0 21 0 0 0 chrX 8733991 8734012 -153865918 + AT_rich Low_complexity Low_complexity 1 21 0 402 135 0 0 chrX 8734012 8734086 -153865844 - L1MA4 LINE L1 0 6300 6227 943 53 15 0 chrX 8734086 8734217 -153865713 + L1MA4 LINE L1 6128 6260 -40 181 179 0 51 chrX 8734561 8734600 -153865330 - L3 LINE CR1 -250 1327 1291 261 0 0 0 chrX 8734691 8734720 -153865210 + (TTTTG)n Simple_repeat Simple_repeat 1 29 0 189 147 0 0 chrX 8735132 8735166 -153864764 + (TA)n Simple_repeat Simple_repeat 1 34 0 231 319 121 33 chrX 8735765 8735856 -153864074 + L2 LINE L2 3174 3272 0 1183 198 28 0 chrX 8736573 8736821 -153863109 - L1MB7 LINE L1 -16 6168 5914 2348 144 8 0 chrX 8736895 8737257 -153862673 - MLT1A1 LTR MaLR 0 365 1 1725 208 46 0 chrX 8737263 8737652 -153862278 + MLT1E2 LTR MaLR 219 625 -1 181 269 154 0 chrX 8737920 8737998 -153861932 + L2 LINE L2 1613 1702 -1612 807 10 0 10 chrX 8738006 8738108 -153861822 - L1PA4 LINE L1 -163 5992 5892 1357 48 0 0 chrX 8738108 8738269 -153861661 + L1PA4 LINE L1 5987 6153 -2 215 77 0 26 chrX 8738663 8738702 -153861228 + (TTTTA)n Simple_repeat Simple_repeat 1 38 0 12760 27 2 2 chrX 8738702 8741043 -153858887 - L1PA3 LINE L1 -24 6131 3789 1127 174 33 5 chrX 8741161 8741374 -153858556 + MER20 DNA MER1_type 1 219 0 195 100 0 0 chrX 8741475 8741505 -153858425 + (GGGAGA)n Simple_repeat Simple_repeat 3 32 0 21 0 0 0 chrX 8741972 8741993 -153857937 + AT_rich Low_complexity Low_complexity 1 21 0 355 328 41 62 chrX 8743928 8744123 -153855807 - MIR3 SINE MIR -4 204 14 1154 161 22 40 chrX 8744456 8744679 -153855251 - MER20 DNA MER1_type 0 219 1 3921 16 0 0 chrX 8745381 8745829 -153854101 - L1PA2 LINE L1 -2 6153 5706 902 53 0 0 chrX 8745840 8745953 -153853977 - L1PA10 LINE L1 0 6168 6056 1171 261 35 61 chrX 8746160 8746701 -153853229 - L1ME3 LINE L1 -8 6154 5628 186 356 96 0 chrX 8747010 8747114 -153852816 + MIR SINE MIR 11 124 -138 7757 20 0 0 chrX 8747538 8748843 -153851087 - L1PA3 LINE L1 0 6155 4851 1359 146 47 29 chrX 8749405 8749717 -153850213 - L1MA4 LINE L1 -9 6294 6004 40 49 0 0 chrX 8749864 8749925 -153850005 + AT_rich Low_complexity Low_complexity 1 61 0 1094 193 9 14 chrX 8751438 8751656 -153848274 + MER20 DNA MER1_type 3 219 0 333 349 40 7 chrX 8751861 8752010 -153847920 + MIR SINE MIR 95 248 -14 2234 141 88 13 chrX 8752795 8753193 -153846737 - MSTA LTR MaLR 0 428 1 200 200 0 0 chrX 8754343 8754378 -153845552 + (TATATG)n Simple_repeat Simple_repeat 5 39 0 186 270 0 0 chrX 8754401 8754475 -153845455 + (TA)n Simple_repeat Simple_repeat 1 74 0 2289 123 17 57 chrX 8754603 8755008 -153844922 + MLT1B LTR MaLR 1 389 -1 475 267 86 28 chrX 8755083 8755348 -153844582 + L1ME LINE L1 5521 5809 -361 243 0 0 0 chrX 8755421 8755448 -153844482 + (TG)n Simple_repeat Simple_repeat 2 28 0 330 252 108 7 chrX 8755948 8756087 -153843843 - MER103 DNA DNA -6 160 8 204 135 27 0 chrX 8756272 8756309 -153843621 + (CAA)n Simple_repeat Simple_repeat 2 39 0 280 276 60 141 chrX 8756684 8756803 -153843127 + MER91B DNA MER1_type 8 106 -84 2243 106 0 13 chrX 8756803 8757115 -153842815 - AluSc SINE Alu -1 308 1 280 276 60 141 chrX 8757115 8757194 -153842736 + MER91B DNA MER1_type 106 190 0 256 285 200 15 chrX 8757236 8757366 -153842564 + MIR3 SINE MIR 17 170 -38 * 638 310 67 65 chrX 8757365 8757736 -153842194 + L2 LINE L2 2896 3267 -5 755 29 59 0 chrX 8757777 8757879 -153842051 - L1PA13 LINE L1 -4 6159 6052 766 284 36 4 chrX 8758537 8758762 -153841168 + MIR SINE MIR 15 246 -16 2033 132 7 0 chrX 8759512 8759800 -153840130 - AluSx SINE Alu -22 290 1 452 18 18 0 chrX 8759849 8759906 -153840024 + (TG)n Simple_repeat Simple_repeat 2 59 0 844 219 0 12 chrX 8760785 8760949 -153838981 + MER5A DNA MER1_type 6 167 -22 224 261 22 54 chrX 8761987 8762079 -153837851 + MIR SINE MIR 63 151 -111 384 40 0 0 chrX 8762339 8762389 -153837541 + (TG)n Simple_repeat Simple_repeat 2 51 0 446 266 17 35 chrX 8764238 8764411 -153835519 + MER117 DNA MER1_type 1 170 -27 26462 41 4 2 chrX 8764588 8768682 -153831248 + L1PA3 LINE L1 2091 6191 0 369 355 108 0 chrX 8768727 8768930 -153831000 + HAL1 LINE L1 359 583 -1924 7159 50 5 0 chrX 8769083 8770136 -153829794 + L1PA5 LINE L1 5099 6152 -2 22 35 0 0 chrX 8770150 8770179 -153829751 + AT_rich Low_complexity Low_complexity 1 29 0 220 311 0 0 chrX 8771948 8772009 -153827921 + CT-rich Low_complexity Low_complexity 4 64 0 392 324 171 24 chrX 8772220 8772628 -153827302 + HAL1 LINE L1 881 1305 -1202 285 200 12 50 chrX 8773020 8773100 -153826830 + L2 LINE L2 3231 3307 -6 192 373 124 17 chrX 8773198 8773375 -153826555 - L3b LINE CR1 -12 1571 1376 180 111 0 0 chrX 8773567 8773594 -153826336 + (CA)n Simple_repeat Simple_repeat 2 28 0 195 303 53 26 chrX 8773782 8773858 -153826072 + L2 LINE L2 2559 2636 -678 1341 42 0 0 chrX 8774103 8774268 -153825662 - L1PA4 LINE L1 -4 6151 5987 839 10 0 0 chrX 8774268 8774364 -153825566 + L1PA4 LINE L1 5897 5992 -163 183 269 154 0 chrX 8774372 8774450 -153825480 - L2 LINE L2 -1612 1702 1613 1825 197 51 8 chrX 8774718 8775108 -153824822 - MLT1E2 LTR MaLR -1 625 219 2029 165 11 11 chrX 8775114 8775477 -153824453 + MLT1A1 LTR MaLR 1 363 -2 217 293 98 49 chrX 8775977 8776141 -153823789 + MIR SINE MIR 13 184 -78 21 36 0 0 chrX 8776575 8776603 -153823327 + AT_rich Low_complexity Low_complexity 1 28 0 306 300 138 36 chrX 8779485 8779732 -153820198 - L1 LINE L1 -2860 3286 3015 557 251 99 70 chrX 8780656 8780999 -153818931 + MLT1L LTR MaLR 5 357 -258 6432 34 7 2 chrX 8781318 8782377 -153817553 + L1P1 LINE L1 4618 5684 -471 191 36 36 0 chrX 8783602 8783630 -153816300 + (TCC)n Simple_repeat Simple_repeat 3 31 0 463 292 69 0 chrX 8784000 8784130 -153815800 + MER91C DNA MER1_type 1 139 -1 4277 69 21 58 chrX 8784386 8785054 -153814876 - L1P LINE L1 -865 5281 4639 25 105 0 0 chrX 8785133 8785228 -153814702 + AT_rich Low_complexity Low_complexity 1 95 0 816 266 133 0 chrX 8786290 8786516 -153813414 - LTR33 LTR ERVL -23 498 243 804 158 6 32 chrX 8788685 8788843 -153811087 + L1PA6 LINE L1 5852 6005 -149 286 238 24 24 chrX 8790280 8790406 -153809524 + T-rich Low_complexity Low_complexity 3 128 0 6861 139 13 16 chrX 8790599 8792593 -153807337 + L1PA11 LINE L1 4186 6171 -3 299 272 70 63 chrX 8793083 8793314 -153806616 + MIR3 SINE MIR 4 233 -29 1789 181 7 7 chrX 8793809 8794108 -153805822 - AluJb SINE Alu -13 299 1 1981 171 131 11 chrX 8794538 8794989 -153804941 + MLT1D LTR MaLR 1 505 0 21 0 0 0 chrX 8795380 8795401 -153804529 + AT_rich Low_complexity Low_complexity 1 21 0 414 135 0 0 chrX 8795401 8795475 -153804455 - L1MA4 LINE L1 0 6300 6227 973 61 15 0 chrX 8795475 8795606 -153804324 + L1MA4 LINE L1 6128 6260 -40 181 179 0 51 chrX 8795949 8795988 -153803942 - L3 LINE CR1 -250 1327 1291 261 0 0 0 chrX 8796079 8796108 -153803822 + (TTTTG)n Simple_repeat Simple_repeat 1 29 0 189 147 0 0 chrX 8796520 8796554 -153803376 + (TA)n Simple_repeat Simple_repeat 1 34 0 236 319 121 33 chrX 8797153 8797244 -153802686 + L2 LINE L2 3174 3272 0 1202 198 28 0 chrX 8797961 8798209 -153801721 - L1MB7 LINE L1 -16 6168 5914 2350 144 8 0 chrX 8798283 8798645 -153801285 - MLT1A1 LTR MaLR 0 365 1 1855 198 51 5 chrX 8798651 8799040 -153800890 + MLT1E2 LTR MaLR 219 625 -1 789 39 0 10 chrX 8799394 8799496 -153800434 - L1PA4 LINE L1 -163 5992 5892 1356 48 0 0 chrX 8799496 8799657 -153800273 + L1PA4 LINE L1 5987 6153 -2 24 0 0 0 chrX 8799969 8799993 -153799937 + AT_rich Low_complexity Low_complexity 1 24 0 427 257 104 64 chrX 8800383 8800632 -153799298 - MIR SINE MIR 0 262 4 25 99 0 0 chrX 8800704 8800785 -153799145 + AT_rich Low_complexity Low_complexity 1 81 0 1021 211 0 0 chrX 8800963 8801171 -153798759 + MER3 DNA MER1_type 1 208 -1 717 289 84 52 chrX 8801588 8801945 -153797985 + L1ME LINE L1 2943 3328 -2818 2311 112 0 0 chrX 8801945 8802257 -153797673 + AluSx SINE Alu 1 312 0 717 289 84 52 chrX 8802257 8802509 -153797421 + L1ME LINE L1 3328 3571 -2575 1801 172 0 6 chrX 8802680 8802994 -153796936 + AluJo SINE Alu 1 312 0 886 208 26 40 chrX 8803151 8803377 -153796553 + L1ME LINE L1 5320 5542 -624 2516 220 55 32 chrX 8803479 8804165 -153795765 + L1ME1 LINE L1 5461 6162 -4 391 323 94 12 chrX 8804159 8804661 -153795269 + L1M4 LINE L1 2260 2802 -3344 * 22 0 0 0 chrX 8804686 8804708 -153795222 + AT_rich Low_complexity Low_complexity 1 22 0 274 269 206 50 chrX 8804764 8805046 -153794884 + HAL1 LINE L1 28 353 -2154 * 14565 23 0 0 chrX 8805013 8806739 -153793191 + L1P LINE L1 2903 4628 -1518 532 258 112 83 chrX 8806875 8807294 -153792636 - L1ME4a LINE L1 -81 6040 5600 2217 108 3 0 chrX 8807294 8807589 -153792341 - AluSc SINE Alu -13 296 1 532 258 112 83 chrX 8807589 8807723 -153792207 - L1ME4a LINE L1 -521 5600 5471 4953 157 77 35 chrX 8808388 8809416 -153790514 + MER11C LTR ERVK 1 1071 0 437 271 68 15 chrX 8809440 8809573 -153790357 + MIR SINE MIR 2 141 -121 371 330 42 91 chrX 8810013 8810180 -153789750 + L2 LINE L2 2325 2499 -815 2035 146 0 0 chrX 8810180 8810475 -153789455 - AluSx SINE Alu -12 300 6 371 330 42 91 chrX 8810475 8810876 -153789054 + L2 LINE L2 2499 2865 -449 205 225 25 0 chrX 8811710 8811750 -153788180 + L2 LINE L2 3216 3256 -16 215 322 11 11 chrX 8813576 8813666 -153786264 + CT-rich Low_complexity Low_complexity 1 90 0 362 241 60 0 chrX 8813730 8813813 -153786117 + MIR SINE MIR 136 223 -39 188 200 40 40 chrX 8813913 8813963 -153785967 + L3b LINE CR1 1277 1326 -257 21 0 0 0 chrX 8814244 8814265 -153785665 + AT_rich Low_complexity Low_complexity 1 21 0 240 315 102 35 chrX 8814422 8814619 -153785311 + MIR SINE MIR 13 222 -40 21 36 0 0 chrX 8815018 8815046 -153784884 + AT_rich Low_complexity Low_complexity 1 28 0 717 143 24 16 chrX 8815339 8815465 -153784465 + L1PB3 LINE L1 6018 6144 -10 409 238 91 75 chrX 8815478 8815664 -153784266 - L1ME1 LINE L1 -134 6033 5846 1553 157 14 7 chrX 8816461 8816747 -153783183 - L1MB3 LINE L1 -2 6181 5894 1549 258 131 52 chrX 8816978 8817911 -153782019 - HAL1 LINE L1 -1143 1364 359 204 83 56 0 chrX 8817956 8817992 -153781938 + T-rich Low_complexity Low_complexity 2 39 0 8123 86 4 2 chrX 8817995 8819914 -153780016 - L1PA3 LINE L1 -3 6152 4231 528 319 26 35 chrX 8821030 8821262 -153778668 + MIR SINE MIR 12 241 -21 255 296 10 20 chrX 8821310 8821408 -153778522 + (TAG)n Simple_repeat Simple_repeat 2 98 0 366 23 0 0 chrX 8821470 8821513 -153778417 + (GA)n Simple_repeat Simple_repeat 1 43 0 266 256 26 0 chrX 8822218 8822296 -153777634 - MIR3 SINE MIR -5 203 124 1512 115 93 0 chrX 8822704 8822958 -153776972 + AluSx SINE Alu 38 312 0 427 257 104 64 chrX 8823372 8823621 -153776309 - MIR SINE MIR 0 262 4 25 99 0 0 chrX 8823693 8823774 -153776156 + AT_rich Low_complexity Low_complexity 1 81 0 240 276 23 0 chrX 8824450 8824537 -153775393 - L1MCc LINE L1 -6316 107 19 790 251 12 0 chrX 8824745 8824916 -153775014 + MIR SINE MIR 79 251 -11 3511 102 4 25 chrX 8825160 8825680 -153774250 + MER41B LTR ERV1 1 509 -126 1336 150 47 29 chrX 8825992 8826304 -153773626 + L1MA4 LINE L1 6004 6294 -9 1081 142 18 18 chrX 8826867 8827085 -153772845 + L1P LINE L1 4851 5068 -1078 240 186 12 23 chrX 8827332 8827418 -153772512 + GA-rich Low_complexity Low_complexity 1 85 0 30797 78 8 163 chrX 8829046 8829424 -153770506 - L1PA16 LINE L1 -1 6165 5730 4800 43 7 0 chrX 8829424 8830007 -153769923 - LTR14C LTR ERVK 0 587 1 30797 78 8 163 chrX 8830007 8836914 -153763016 - L1PA16 LINE L1 -436 5730 12 23 54 0 0 chrX 8836948 8836985 -153762945 + AT_rich Low_complexity Low_complexity 1 37 0 294 264 139 21 chrX 8837056 8837200 -153762730 - MIR SINE MIR -41 221 61 894 294 138 12 chrX 8837801 8838288 -153761642 - HAL1 LINE L1 0 2507 1960 3248 204 22 9 chrX 8838365 8839005 -153760925 - MLT1E1 LTR MaLR -10 623 3 2920 252 129 83 chrX 8839028 8839579 -153760351 - HAL1 LINE L1 -678 1829 1305 2249 78 7 3 chrX 8839579 8839872 -153760058 - AluY SINE Alu -17 294 1 2920 252 129 83 chrX 8839872 8839992 -153759938 - HAL1 LINE L1 -1202 1305 1192 2079 126 7 0 chrX 8839992 8840293 -153759637 - AluSx SINE Alu -7 305 3 2920 252 129 83 chrX 8840293 8841361 -153758569 - HAL1 LINE L1 -1315 1192 9 386 324 90 33 chrX 8841368 8841701 -153758229 + L1M4 LINE L1 4581 4932 -1214 202 250 0 0 chrX 8841903 8841943 -153757987 + (CATATA)n Simple_repeat Simple_repeat 5 44 0 1482 253 75 36 chrX 8842268 8842777 -153757153 - MLT1G1 LTR MaLR -5 544 1 9001 218 13 8 chrX 8842809 8845410 -153754520 + L1PA16 LINE L1 3146 5791 -375 4889 38 5 0 chrX 8845410 8845994 -153753936 + LTR14C LTR ERVK 1 587 0 9001 218 13 8 chrX 8845994 8846367 -153753563 + L1PA16 LINE L1 5791 6160 -6 216 0 0 0 chrX 8846822 8846846 -153753084 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 432 275 53 23 chrX 8847415 8847546 -153752384 - MER5A DNA MER1_type -29 160 26 667 196 176 0 chrX 8847615 8847768 -153752162 - MIR SINE MIR -60 202 23 27 29 0 0 chrX 8848563 8848597 -153751333 + AT_rich Low_complexity Low_complexity 1 34 0 1607 160 190 11 chrX 8850184 8850547 -153749383 - MSTA LTR MaLR 0 428 1 269 248 143 56 chrX 8851120 8851281 -153748649 - MER5B DNA MER1_type -2 176 2 1241 164 28 0 chrX 8852164 8852377 -153747553 + MER20 DNA MER1_type 1 219 0 333 316 165 0 chrX 8852628 8852761 -153747169 + L2 LINE L2 3117 3271 -1 521 246 47 15 chrX 8853253 8853503 -153746427 + LTR16A LTR ERVL 144 443 -7 472 244 67 107 chrX 8853990 8854260 -153745670 + MLT1J2 LTR MaLR 68 326 -124 363 78 0 0 chrX 8855194 8855245 -153744685 + (TG)n Simple_repeat Simple_repeat 2 52 0 14500 161 27 18 chrX 8855295 8859398 -153740532 - L1MA3 LINE L1 0 7724 3617 5767 184 41 11 chrX 8859399 8860560 -153739370 - L1MA3 LINE L1 -6358 1207 12 1489 186 20 20 chrX 8860566 8860964 -153738966 - L1 LINE L1 -2667 4898 4501 7777 147 54 3 chrX 8860975 8862256 -153737674 - L1 LINE L1 -6204 1361 16 2433 233 64 90 chrX 8862258 8863182 -153736748 - MER69 DNA AcHobo -1613 913 14 338 261 24 68 chrX 8863232 8863439 -153736491 - L1MC5 LINE L1 -44 7917 7720 23 0 0 0 chrX 8864052 8864075 -153735855 + AT_rich Low_complexity Low_complexity 1 23 0 257 386 40 0 chrX 8864371 8864472 -153735458 - L2 LINE L2 -65 3207 3103 366 337 33 37 chrX 8864531 8864831 -153735099 - L2 LINE L2 -549 2765 2467 187 133 44 0 chrX 8865578 8865623 -153734307 + (TA)n Simple_repeat Simple_repeat 2 48 0 190 259 56 19 chrX 8865730 8865784 -153734146 - L2 LINE L2 -2 3270 3215 6028 26 1 0 chrX 8865971 8866673 -153733257 + L1PA4 LINE L1 5448 6150 -5 494 312 94 8 chrX 8867914 8868148 -153731782 - MLT1I LTR MaLR -4 405 152 258 273 149 13 chrX 8868156 8868310 -153731620 - MLT1I LTR MaLR -223 186 12 4398 104 3 20 chrX 8868317 8868963 -153730967 - MER41B LTR ERV1 0 635 1 783 251 12 0 chrX 8869207 8869378 -153730552 - MIR SINE MIR -11 251 79 699 304 28 33 chrX 8869583 8869974 -153729956 + L1MCc LINE L1 22 410 -6013 2775 127 29 0 chrX 8869994 8870410 -153729520 - MSTA LTR MaLR 0 428 1 2117 206 113 71 chrX 8870580 8870817 -153729113 + L1ME2 LINE L1 5277 5502 -662 727 150 8 31 chrX 8870817 8870944 -153728986 + FLAM_C SINE Alu 1 124 -9 2117 206 113 71 chrX 8870944 8871552 -153728378 + L1ME2 LINE L1 5502 6158 -6 536 278 159 0 chrX 8872127 8872278 -153727652 - MER5A DNA MER1_type -6 183 9 241 255 0 0 chrX 8873848 8873895 -153726035 + (CAT)n Simple_repeat Simple_repeat 2 48 0 231 274 24 0 chrX 8873942 8874026 -153725904 + L1ME LINE L1 5576 5661 -460 256 228 0 25 chrX 8874079 8874158 -153725772 + L1M4 LINE L1 4584 4660 -1486 320 260 65 0 chrX 8874210 8874287 -153725643 - L2 LINE L2 -4 3309 3228 34 72 0 0 chrX 8874320 8874389 -153725541 + AT_rich Low_complexity Low_complexity 1 69 0 21 0 0 0 chrX 8874822 8874843 -153725087 + AT_rich Low_complexity Low_complexity 1 21 0 465 98 73 0 chrX 8874880 8874962 -153724968 - L1MC1 LINE L1 0 6333 6246 297 304 29 0 chrX 8875105 8875207 -153724723 - MLT1L LTR MaLR -15 600 496 850 256 60 38 chrX 8875241 8875588 -153724342 - MLT1L LTR MaLR -224 391 37 203 241 133 12 chrX 8875649 8875732 -153724198 + MIR SINE MIR 120 212 -50 812 192 99 0 chrX 8875897 8876069 -153723861 - MER5A DNA MER1_type 0 189 1 1814 139 0 23 chrX 8877384 8877508 -153722422 - L1PA16 LINE L1 -5 6161 6036 2054 106 70 25 chrX 8877508 8877867 -153722063 + THE1C LTR MaLR 1 375 0 1814 139 0 23 chrX 8877867 8878044 -153721886 - L1PA16 LINE L1 -130 6036 5867 527 347 34 5 chrX 8878480 8878858 -153721072 - L1ME3A LINE L1 -286 5884 5496 2898 174 5 9 chrX 8879261 8879817 -153720113 + L1MB4 LINE L1 5625 6178 -2 209 214 0 0 chrX 8879865 8879907 -153720023 + (TAGA)n Simple_repeat Simple_repeat 1 42 0 314 259 63 28 chrX 8879915 8880058 -153719872 + MLT1K LTR MaLR 432 579 -9 381 43 0 0 chrX 8880196 8880243 -153719687 + (TG)n Simple_repeat Simple_repeat 2 48 0 204 289 0 0 chrX 8880673 8880718 -153719212 + polypurine Low_complexity Low_complexity 1 45 0 22 0 0 0 chrX 8880978 8881000 -153718930 + AT_rich Low_complexity Low_complexity 1 22 0 2867 156 34 6 chrX 8882493 8882966 -153716964 + MER66B LTR ERV1 1 486 0 224 308 242 6 chrX 8883087 8883269 -153716661 - MIR SINE MIR -37 225 1 21 0 0 0 chrX 8883545 8883566 -153716364 + AT_rich Low_complexity Low_complexity 1 21 0 340 337 63 19 chrX 8884577 8884782 -153715148 - L1MC4a LINE L1 -1888 5920 5707 261 256 58 39 chrX 8884784 8884940 -153714990 - L1MC4a LINE L1 -2074 5734 5576 5298 174 39 57 chrX 8884941 8885481 -153714449 + L1MC3 LINE L1 6545 7093 -692 189 74 0 0 chrX 8885481 8885508 -153714422 + (TAAA)n Simple_repeat Simple_repeat 4 30 0 5298 174 39 57 chrX 8885508 8886223 -153713707 + L1MC3 LINE L1 7093 7777 -8 332 259 26 9 chrX 8886609 8886725 -153713205 + L1M4 LINE L1 4731 4848 -1298 234 156 0 0 chrX 8886735 8886780 -153713150 + (CA)n Simple_repeat Simple_repeat 2 46 0 245 301 75 0 chrX 8887106 8887199 -153712731 - MIR SINE MIR -7 255 156 1021 276 31 29 chrX 8887349 8887782 -153712148 + L1MC4 LINE L1 6484 7016 -877 615 14 0 0 chrX 8889423 8889495 -153710435 + (TC)n Simple_repeat Simple_repeat 1 72 0 457 311 164 15 chrX 8889521 8889923 -153710007 + LTR33 LTR ERVL 35 496 -25 2868 6 0 0 chrX 8889953 8890264 -153709666 + AluYa5 SINE Alu 1 311 0 1116 261 74 30 chrX 8890502 8890932 -153708998 + LTR16A LTR ERVL 2 450 0 308 148 16 0 chrX 8893006 8893067 -153706863 + GA-rich Low_complexity Low_complexity 3 64 0 533 64 13 0 chrX 8893801 8893879 -153706051 + (TAGA)n Simple_repeat Simple_repeat 4 82 0 36 0 0 0 chrX 8894106 8894142 -153705788 + AT_rich Low_complexity Low_complexity 1 36 0 992 231 9 18 chrX 8894701 8894926 -153705004 - MER58A DNA MER1_type 0 224 2 255 61 0 0 chrX 8895164 8895197 -153704733 + (A)n Simple_repeat Simple_repeat 1 33 0 306 0 0 0 chrX 8896975 8897009 -153702921 + (CA)n Simple_repeat Simple_repeat 2 35 0 198 347 31 41 chrX 8897120 8897218 -153702712 - MER5A DNA MER1_type 0 189 93 364 250 9 45 chrX 8897237 8897349 -153702581 + MER5A DNA MER1_type 47 154 -35 2189 114 0 13 chrX 8897440 8897782 -153702148 - AluSq SINE Alu 0 338 1 27 0 0 0 chrX 8897935 8897962 -153701968 + AT_rich Low_complexity Low_complexity 1 27 0 315 231 150 54 chrX 8898132 8898392 -153701538 - L1MC4 LINE L1 -17 8025 7741 300 267 42 33 chrX 8898443 8898563 -153701367 - L1MC4 LINE L1 -283 7759 7639 327 135 19 0 chrX 8898563 8898615 -153701315 - MLT1E1 LTR MaLR -601 53 1 1647 221 46 7 chrX 8898631 8899092 -153700838 - L1MEc LINE L1 -3905 2491 2013 5662 82 7 4 chrX 8899099 8899916 -153700014 - L1PA14 LINE L1 0 6161 5342 4786 168 8 4 chrX 8899917 8900848 -153699082 + L1PA14 LINE L1 4397 5330 -816 2018 260 57 36 chrX 8900856 8900989 -153698941 - L1MEc LINE L1 -4385 2011 1882 2177 81 7 7 chrX 8900989 8901285 -153698645 - L1PA7 LINE L1 -2 6152 5857 2018 260 57 36 chrX 8901285 8901575 -153698355 - L1MEc LINE L1 -4514 1882 1600 189 74 0 0 chrX 8901575 8901602 -153698328 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 2018 260 57 36 chrX 8901602 8902174 -153697756 - L1MEc LINE L1 -4796 1600 994 2270 265 45 14 chrX 8902183 8902825 -153697105 - L1MEc LINE L1 -5699 697 36 323 257 140 15 chrX 8903746 8903882 -153696048 + MIR SINE MIR 4 156 -106 1768 202 42 18 chrX 8903888 8904339 -153695591 + LTR37B LTR ERV1 6 467 -1 263 277 69 0 chrX 8904340 8904441 -153695489 + MIR SINE MIR 155 262 0 2207 108 7 0 chrX 8904907 8905204 -153694726 - AluSx SINE Alu -13 299 1 301 295 32 0 chrX 8905938 8906033 -153693897 + (CATATA)n Simple_repeat Simple_repeat 2 99 0 300 214 0 0 chrX 8906161 8906217 -153693713 + MER5A DNA MER1_type 9 64 -125 397 237 79 0 chrX 8906307 8906421 -153693509 + MER3 DNA MER1_type 46 168 -41 1336 179 179 3 chrX 8906426 8906756 -153693174 + MER3 DNA MER1_type 2236 2623 0 583 187 32 8 chrX 8906782 8906905 -153693025 - MER5B DNA MER1_type -50 128 3 265 216 27 54 chrX 8907185 8907259 -153692671 - MER5A DNA MER1_type -1 188 117 277 179 357 0 chrX 8907281 8907365 -153692565 - MER81 DNA DNA 0 114 1 197 169 92 62 chrX 8907366 8907431 -153692499 + MER5A DNA MER1_type 122 188 -1 521 245 13 14 chrX 8907685 8907834 -153692096 + MIR SINE MIR 17 162 -67 2392 163 2 0 chrX 8907871 8908264 -153691666 + L1MC3 LINE L1 7384 7777 -8 329 258 30 90 chrX 8908505 8908672 -153691258 + L2 LINE L2 3119 3275 -38 27 87 0 0 chrX 8909084 8909153 -153690777 + AT_rich Low_complexity Low_complexity 1 69 0 1417 171 97 74 chrX 8909221 8909601 -153690329 - MLT1B LTR MaLR 0 390 2 1086 197 61 9 chrX 8909692 8909905 -153690025 + MER58A DNA MER1_type 1 224 0 243 300 70 46 chrX 8909927 8910082 -153689848 - MIR SINE MIR -60 148 20 292 321 0 0 chrX 8910925 8911009 -153688921 + MLT1K LTR MaLR 159 242 -346 379 258 181 13 chrX 8911063 8911218 -153688712 + MLT1K LTR MaLR 408 588 0 2174 104 0 20 chrX 8911535 8911833 -153688097 - AluSx SINE Alu -20 292 1 423 293 90 48 chrX 8914036 8914240 -153685690 + L1MC4a LINE L1 3950 4173 -1973 2390 87 0 37 chrX 8914240 8914563 -153685367 + AluSq SINE Alu 1 311 -2 423 293 90 48 chrX 8914563 8914669 -153685261 + L1MC4a LINE L1 4173 4273 -1873 2478 153 51 36 chrX 8914724 8915174 -153684756 - MSTB2 LTR MaLR 0 457 1 1087 275 35 52 chrX 8915448 8915846 -153684084 + L1MC4a LINE L1 5461 5645 -529 269 306 78 11 chrX 8916355 8916535 -153683395 + L2 LINE L2 2189 2380 -934 1062 221 9 27 chrX 8917326 8917548 -153682382 - MER20 DNA MER1_type -1 218 1 2144 128 0 0 chrX 8917937 8918227 -153681703 - AluSg SINE Alu -20 290 1 651 301 119 10 chrX 8918702 8919025 -153680905 + L2 LINE L2 2711 3069 -244 399 301 168 0 chrX 8919036 8919179 -153680751 - MER5A DNA MER1_type -5 184 18 642 216 51 81 chrX 8919201 8919437 -153680493 + L2 LINE L2 3084 3312 -1 820 284 30 30 chrX 8921960 8922263 -153677667 - LTR16A LTR ERVL -91 359 57 925 195 127 0 chrX 8922293 8922529 -153677401 - Charlie4a DNA MER1_type -169 339 74 225 0 0 0 chrX 8923019 8923044 -153676886 + (CGG)n Simple_repeat Simple_repeat 2 26 0 1640 156 32 7 chrX 8923869 8924151 -153675779 + AluJb SINE Alu 1 289 -23 393 270 119 19 chrX 8924210 8924369 -153675561 + MIR SINE MIR 35 209 -53 1100 151 98 34 chrX 8924422 8924627 -153675303 + MER20 DNA MER1_type 1 218 -1 320 232 182 20 chrX 8925049 8925148 -153674782 - MIR SINE MIR -87 175 61 263 377 70 15 chrX 8926778 8926977 -153672953 + L3 LINE CR1 243 452 -1125 242 302 194 35 chrX 8927070 8927328 -153672602 + L3 LINE CR1 948 1246 -331 226 125 0 0 chrX 8927357 8927389 -153672541 + MER58A DNA MER1_type 37 68 -39 555 169 7 110 chrX 8927438 8927574 -153672356 - MER58B DNA MER1_type 0 341 220 826 70 0 0 chrX 8927757 8927857 -153672073 - HY3 scRNA scRNA -1 100 1 495 283 92 0 chrX 8927885 8928069 -153671861 - MIR SINE MIR -48 214 14 429 211 56 0 chrX 8928263 8928353 -153671577 + MER20 DNA MER1_type 125 219 0 1790 202 83 83 chrX 8929244 8929764 -153670166 - MLT2B1 LTR ERVL 0 520 1 699 233 233 11 chrX 8930411 8930855 -153669075 - MLT1G LTR MaLR -14 576 32 527 232 90 19 chrX 8931039 8931194 -153668736 - MER5A DNA MER1_type -1 188 23 180 255 109 76 chrX 8931831 8932015 -153667915 + L2 LINE L2 3069 3258 -14 3507 56 16 70 chrX 8934842 8935326 -153664604 + L1PA7 LINE L1 5687 6144 -10 2368 88 0 3 chrX 8935392 8935687 -153664243 - AluSg SINE Alu -16 294 1 2496 116 31 6 chrX 8936267 8936621 -153663309 + THE1B LTR MaLR 1 363 -1 463 311 97 5 chrX 8936945 8937141 -153662789 + MIR SINE MIR 47 260 -2 1733 122 0 8 chrX 8937468 8937706 -153662224 - AluSq SINE Alu -51 262 27 21 0 0 0 chrX 8937887 8937908 -153662022 + AT_rich Low_complexity Low_complexity 1 21 0 1745 84 51 8 chrX 8937971 8938208 -153661722 + L1PA13 LINE L1 5903 6149 -14 1917 165 0 0 chrX 8939244 8939535 -153660395 - AluJb SINE Alu -21 291 1 2449 142 43 10 chrX 8939933 8940348 -153659582 + L1MB8 LINE L1 5731 6159 -19 2666 39 3 0 chrX 8940371 8940678 -153659252 + AluY SINE Alu 1 308 -3 880 199 21 27 chrX 8941304 8941490 -153658440 - MER5A DNA MER1_type -3 186 2 1906 162 143 19 chrX 8941971 8942207 -153657723 - MLT1C LTR MaLR -3 464 259 273 89 0 0 chrX 8942207 8942252 -153657678 + (TG)n Simple_repeat Simple_repeat 1 45 0 1906 162 143 19 chrX 8942252 8942428 -153657502 - MLT1C LTR MaLR -208 259 1 2343 147 28 0 chrX 8943081 8943436 -153656494 - MLT1A1 LTR MaLR 0 365 1 225 235 0 44 chrX 8943691 8943759 -153656171 + MIR SINE MIR 87 151 -57 688 252 13 0 chrX 8943806 8943957 -153655973 - MER45A DNA AcHobo 0 178 26 264 127 0 0 chrX 8944128 8944183 -153655747 + (TGGA)n Simple_repeat Simple_repeat 3 57 0 345 324 9 0 chrX 8944897 8945005 -153654925 + MIR SINE MIR 37 145 -117 421 297 103 26 chrX 8945148 8945344 -153654586 - MIR SINE MIR -12 250 41 282 320 103 0 chrX 8945758 8945855 -153654075 - L2 LINE L2 -3 3269 3163 622 126 58 211 chrX 8946578 8946801 -153653129 + MER53 DNA DNA 1 189 0 287 188 25 88 chrX 8946880 8946960 -153652970 + MER81 DNA DNA 40 114 0 2148 118 3 0 chrX 8947948 8948245 -153651685 + AluSx SINE Alu 1 298 -14 28 29 0 0 chrX 8949301 8949336 -153650594 + AT_rich Low_complexity Low_complexity 1 35 0 29 47 0 0 chrX 8949679 8949722 -153650208 + AT_rich Low_complexity Low_complexity 1 43 0 556 230 99 6 chrX 8951700 8951861 -153648069 + MLT1J2 LTR MaLR 1 176 -274 1887 64 0 9 chrX 8951879 8952112 -153647818 + AluY SINE Alu 80 310 -1 489 215 35 157 chrX 8952124 8952436 -153647494 + MLT1J2 LTR MaLR 177 450 0 21 0 0 0 chrX 8952814 8952835 -153647095 + AT_rich Low_complexity Low_complexity 1 21 0 995 167 78 29 chrX 8954175 8954557 -153645373 + MLT1D LTR MaLR 2 450 -55 219 250 239 0 chrX 8954728 8954816 -153645114 - MIR SINE MIR -7 255 147 * 289 273 122 35 chrX 8954806 8954978 -153644952 - MIR SINE MIR -1 261 75 425 307 113 18 chrX 8954978 8955182 -153644748 - MIR SINE MIR -15 247 21 361 253 32 0 chrX 8957251 8957346 -153642584 + MER5A DNA MER1_type 2 99 -90 675 228 0 0 chrX 8957346 8957482 -153642448 - MER45A DNA AcHobo 0 178 43 395 174 65 11 chrX 8957504 8957596 -153642334 + MER5A DNA MER1_type 92 188 -1 216 259 0 0 chrX 8958261 8958315 -153641615 - MIR SINE MIR 0 262 209 208 222 22 0 chrX 8958765 8958810 -153641120 + (CA)n Simple_repeat Simple_repeat 2 47 0 400 156 44 44 chrX 8958811 8958991 -153640939 + (CATATA)n Simple_repeat Simple_repeat 1 180 0 28 29 0 0 chrX 8961595 8961630 -153638300 + AT_rich Low_complexity Low_complexity 1 35 0 25 0 0 0 chrX 8962160 8962185 -153637745 + AT_rich Low_complexity Low_complexity 1 25 0 877 102 8 0 chrX 8962344 8962462 -153637468 + AluJb SINE Alu 174 292 -20 731 216 75 9 chrX 8962502 8962715 -153637215 + MER96B DNA MER1_type? 190 416 -1 1350 180 0 16 chrX 8962920 8963165 -153636765 - AluJo SINE Alu -4 308 68 299 272 22 122 chrX 8963762 8963942 -153635988 - MIR SINE MIR -98 164 3 514 244 34 28 chrX 8964475 8964651 -153635279 + ME