7281 139 40 6 chr9 8 1318 -142270126 - L1PBa LINE L1 -4276 2587 1087 2348 158 22 9 chr9 1490 1939 -142269505 + L1MB1 LINE L1 5714 6168 0 1221 140 10 24 chr9 1951 2158 -142269286 - Tigger3(Golem) DNA MER2_type -24 3005 2802 321 153 333 0 chr9 2156 2228 -142269216 - Tigger3(Golem) DNA MER2_type -2932 97 2 * 1839 175 0 7 chr9 2543 2834 -142268610 - AluJb SINE Alu -23 289 1 359 294 73 0 chr9 4174 4283 -142267161 + L1ME3 LINE L1 5965 6081 -81 2006 105 28 65 chr9 4342 4665 -142266779 + AluSx SINE Alu 1 311 -1 970 221 114 76 chr9 4780 5282 -142266162 + MER39 LTR ERV1 1 707 0 190 227 0 23 chr9 5387 5431 -142266013 - MER5A DNA MER1_type -21 168 126 369 250 30 54 chr9 5573 5741 -142265703 + L1MC5 LINE L1 7773 7936 -25 192 270 139 70 chr9 5741 5856 -142265588 - MER5B DNA MER1_type -53 125 3 189 311 115 0 chr9 5861 5922 -142265522 - L2 LINE L2 -1 3271 3204 1624 163 20 24 chr9 8858 9152 -142262292 + AluJo SINE Alu 2 294 -18 1671 195 7 3 chr9 9180 9487 -142261957 + AluJb SINE Alu 1 308 -4 194 222 143 0 chr9 10367 10430 -142261014 + MIR SINE MIR 78 149 -113 188 67 33 0 chr9 10478 10508 -142260936 + (TTTC)n Simple_repeat Simple_repeat 2 32 0 1833 168 10 16 chr9 10717 11027 -142260417 + AluJo SINE Alu 1 308 -4 2702 146 17 2 chr9 11171 11638 -142259806 + L1MB1 LINE L1 5695 6168 0 42789 31 21 6 chr9 11749 17813 -142253631 + L1PA3 LINE L1 1 6155 0 25 0 0 0 chr9 17831 17856 -142253588 + AT_rich Low_complexity Low_complexity 1 25 0 2259 85 10 19 chr9 18994 19301 -142252143 + AluSc SINE Alu 1 304 -5 1679 126 72 4 chr9 19865 20128 -142251316 + AluSx SINE Alu 5 285 -27 257 27 54 0 chr9 20150 20187 -142251257 + (TAAAAA)n Simple_repeat Simple_repeat 2 40 0 183 80 0 0 chr9 20679 20704 -142250740 + (A)n Simple_repeat Simple_repeat 1 25 0 185 331 145 8 chr9 21311 21435 -142250009 + L2 LINE L2 2718 2858 -456 222 297 55 78 chr9 21501 21629 -142249815 + L2 LINE L2 2948 3072 -200 193 270 206 40 chr9 21716 21842 -142249602 + L2 LINE L2 3122 3268 -4 2620 55 0 0 chr9 22217 22526 -142248918 - AluY SINE Alu -2 309 1 225 0 0 0 chr9 23538 23563 -142247881 + (A)n Simple_repeat Simple_repeat 1 25 0 587 246 181 0 chr9 25495 25710 -142245734 - MIR SINE MIR 0 262 9 21 0 0 0 chr9 26380 26401 -142245043 + AT_rich Low_complexity Low_complexity 1 21 0 801 175 0 0 chr9 27406 27532 -142243912 + FLAM_A SINE Alu 1 126 -7 1751 78 48 117 chr9 27922 28231 -142243213 + AluSx SINE Alu 1 288 -24 38 22 0 0 chr9 28231 28276 -142243168 + AT_rich Low_complexity Low_complexity 1 45 0 290 164 91 0 chr9 30281 30336 -142241108 + L2 LINE L2 3250 3309 -4 27 0 0 0 chr9 31200 31227 -142240217 + AT_rich Low_complexity Low_complexity 1 27 0 1377 113 120 21 chr9 31390 31673 -142239771 + L1MA9 LINE L1 5997 6307 -5 202 151 0 75 chr9 31762 31815 -142239629 + GA-rich Low_complexity Low_complexity 4 52 0 2355 96 3 0 chr9 33287 33588 -142237856 + AluSx SINE Alu 1 302 -10 259 86 0 0 chr9 33899 33934 -142237510 - U2 snRNA snRNA -153 35 1 809 56 47 0 chr9 34007 34114 -142237330 - L1PA10 LINE L1 -3 6165 6054 31 44 0 0 chr9 34799 34844 -142236600 + AT_rich Low_complexity Low_complexity 1 45 0 2203 115 0 28 chr9 35735 36056 -142235388 + AluSx SINE Alu 1 312 0 1233 168 28 5 chr9 37625 37839 -142233605 + MER20 DNA MER1_type 1 219 0 214 158 0 0 chr9 37873 37911 -142233533 + A-rich Low_complexity Low_complexity 5 42 0 742 251 143 72 chr9 38940 39465 -142231979 + HAL1b LINE L1 77 638 -710 * 745 234 104 57 chr9 39464 39780 -142231664 + HAL1b LINE L1 439 769 -579 12781 95 39 8 chr9 39783 40342 -142231102 + Tigger1 DNA MER2_type 388 928 -1490 2052 103 4 4 chr9 40342 40652 -142230792 - AluSg SINE Alu 0 310 1 12781 95 39 8 chr9 40652 41955 -142229489 + Tigger1 DNA MER2_type 928 2309 -109 1028 134 79 12 chr9 41955 42119 -142229325 - FRAM SINE Alu -4 172 1 691 183 0 0 chr9 42123 42238 -142229206 + Tigger1 DNA MER2_type 2304 2418 0 705 167 30 8 chr9 42242 42374 -142229070 - MER5A DNA MER1_type -23 166 32 456 123 0 0 chr9 42436 42509 -142228935 + (TG)n Simple_repeat Simple_repeat 2 74 0 1929 120 4 4 chr9 42511 42786 -142228658 - AluSx SINE Alu -37 275 1 1451 145 9 0 chr9 43638 43866 -142227578 - MER2 DNA MER2_type -115 230 1 299 189 68 14 chr9 44889 44963 -142226481 - L2 LINE L2 -4 3309 3232 2009 82 0 0 chr9 46006 46262 -142225182 + AluY SINE Alu 41 296 -15 2253 107 0 3 chr9 47198 47506 -142223938 + AluSc SINE Alu 2 308 -1 26 64 0 0 chr9 47886 47933 -142223511 + AT_rich Low_complexity Low_complexity 1 47 0 21 0 0 0 chr9 48072 48093 -142223351 + AT_rich Low_complexity Low_complexity 1 21 0 328 183 112 52 chr9 48454 48624 -142222820 - L1ME LINE L1 -356 5806 5638 233 288 137 0 chr9 48987 49060 -142222384 - L2 LINE L2 -32 3281 3199 390 306 133 43 chr9 49280 49535 -142221909 - L2 LINE L2 -475 2839 2562 212 325 12 12 chr9 50570 50650 -142220794 - MIR SINE MIR -58 150 71 968 272 99 10 chr9 52069 52502 -142218942 - L1ME3A LINE L1 -337 5833 5357 191 106 21 106 chr9 52534 52581 -142218863 - MIR SINE MIR -136 126 84 1261 171 0 18 chr9 53230 53447 -142217997 - AluJo SINE Alu -18 294 82 2187 158 53 44 chr9 53562 54017 -142217427 + L1MB8 LINE L1 5715 6173 -5 2239 117 3 0 chr9 54276 54583 -142216861 - AluSg SINE Alu -2 308 1 733 274 58 14 chr9 54808 55016 -142216428 - MIR SINE MIR -31 231 15 603 189 25 16 chr9 55019 55141 -142216303 - MER58 DNA MER1_type -4 2416 2294 857 196 111 69 chr9 55162 55429 -142216015 + LTR54B LTR ERV1 1 288 -210 1889 143 4 0 chr9 55429 55695 -142215749 + AluSx SINE Alu 1 267 -45 857 196 111 69 chr9 55695 55789 -142215655 + LTR54B LTR ERV1 288 377 -121 453 164 0 133 chr9 55789 55917 -142215527 + MER57A-int LTR ERV1 7425 7535 -2 1020 153 55 92 chr9 55918 56229 -142215215 + MER57A LTR ERV1 1 403 0 400 213 71 50 chr9 56229 56333 -142215111 - MER58 DNA MER1_type -197 144 38 24 0 0 0 chr9 57014 57038 -142214406 + AT_rich Low_complexity Low_complexity 1 24 0 834 206 28 22 chr9 57905 58085 -142213359 - MLT1A1 LTR MaLR 0 365 185 1699 188 0 0 chr9 58224 58506 -142212938 + AluJo SINE Alu 1 282 -30 287 161 0 16 chr9 58514 58576 -142212868 + (TA)n Simple_repeat Simple_repeat 1 61 0 233 238 7 119 chr9 58944 59042 -142212402 - L1MC/D LINE L1 -1895 5913 5836 2273 119 0 0 chr9 59042 59345 -142212099 - AluSq SINE Alu -10 303 1 233 238 7 119 chr9 59345 59397 -142212047 - L1MC/D LINE L1 -1972 5836 5780 22 35 0 0 chr9 59624 59653 -142211791 + AT_rich Low_complexity Low_complexity 1 29 0 2035 153 3 3 chr9 59938 60246 -142211198 + AluSx SINE Alu 1 308 -4 2173 108 142 16 chr9 60562 60885 -142210559 - THE1B LTR MaLR 0 364 1 11972 90 25 15 chr9 60885 62449 -142208995 - THE1B-int LTR MaLR 0 1580 1 2374 114 76 15 chr9 62449 62792 -142208652 - THE1B LTR MaLR 0 364 1 253 253 0 36 chr9 63025 63108 -142208336 + (TATATG)n Simple_repeat Simple_repeat 1 80 0 26 0 0 0 chr9 63252 63278 -142208166 + AT_rich Low_complexity Low_complexity 1 26 0 410 253 110 38 chr9 63278 63515 -142207929 + L1ME LINE L1 5546 5799 -322 2644 200 80 11 chr9 64487 65123 -142206321 - L1MC4a LINE L1 -3 7805 7126 616 298 91 5 chr9 65138 65336 -142206108 - L1ME1 LINE L1 -5 6161 5947 186 121 35 35 chr9 65717 65775 -142205669 + T-rich Low_complexity Low_complexity 4 61 0 438 252 67 118 chr9 65924 66162 -142205282 + MER102a DNA MER1_type 96 321 -9 235 170 19 0 chr9 66164 66217 -142205227 + (TA)n Simple_repeat Simple_repeat 1 54 0 1697 243 62 51 chr9 66514 67122 -142204322 - HAL1 LINE L1 -296 2211 1597 317 270 26 12 chr9 67129 67232 -142204212 - MLT1I LTR MaLR -5 445 324 2301 106 0 0 chr9 67525 67828 -142203616 - AluSg SINE Alu -7 303 1 1015 91 8 0 chr9 67828 67960 -142203484 - AluSg SINE Alu -177 133 1 3482 262 68 63 chr9 67960 68120 -142203324 - HAL1 LINE L1 -935 1572 1414 2151 165 12 54 chr9 68120 68525 -142202919 + MLT1B LTR MaLR 3 390 0 3482 262 68 63 chr9 68525 69011 -142202433 - HAL1 LINE L1 -1093 1414 932 4926 106 26 16 chr9 69011 69064 -142202380 - L1MA3 LINE L1 -1 6304 6253 2405 74 7 0 chr9 69064 69362 -142202082 - AluSp SINE Alu -12 301 2 4926 106 26 16 chr9 69362 70051 -142201393 - L1MA3 LINE L1 -52 6253 5555 3482 262 68 63 chr9 70051 70966 -142200478 - HAL1 LINE L1 -1575 932 1 610 254 17 86 chr9 71328 71420 -142200024 - MIR SINE MIR -12 250 153 2299 84 0 0 chr9 71420 71724 -142199720 + AluSx SINE Alu 1 304 0 610 254 17 86 chr9 71724 71862 -142199582 - MIR SINE MIR -109 153 35 2964 6 0 0 chr9 72232 72549 -142198895 + AluYb8 SINE Alu 1 317 -1 548 259 41 14 chr9 72549 72696 -142198748 + L2 LINE L2 3122 3272 0 2387 187 24 2 chr9 72725 73142 -142198302 + MSTB LTR MaLR 1 426 0 2389 68 122 12 chr9 73150 73486 -142197958 - THE1C LTR MaLR -2 373 1 1097 230 149 9 chr9 74295 74617 -142196827 + L1ME3A LINE L1 5781 6147 -23 1775 151 3 40 chr9 75862 76186 -142195258 - AluJb SINE Alu 0 312 1 270 311 150 36 chr9 76552 76719 -142194725 + MER5A DNA MER1_type 4 189 0 2710 39 0 3 chr9 77333 77645 -142193799 + AluY SINE Alu 1 311 0 25 0 0 0 chr9 77936 77961 -142193483 + AT_rich Low_complexity Low_complexity 1 25 0 421 170 0 85 chr9 78024 78118 -142193326 - L1MC4 LINE L1 -159 7883 7798 2508 189 9 5 chr9 78130 78563 -142192881 - MER41D LTR ERV1 -7 550 116 24 32 0 0 chr9 78662 78693 -142192751 + AT_rich Low_complexity Low_complexity 1 31 0 711 274 112 70 chr9 78757 79231 -142192213 + MLT1L LTR MaLR 122 615 0 648 281 87 5 chr9 79271 79467 -142191977 - MIR SINE MIR -49 213 2 712 292 72 8 chr9 79671 79907 -142191537 + MIR SINE MIR 2 252 -10 622 301 104 20 chr9 79915 80214 -142191230 - MLT1K LTR MaLR -150 438 115 266 288 104 40 chr9 81763 81888 -142189556 + L2 LINE L2 3180 3312 -1 25 31 0 0 chr9 82050 82082 -142189362 + AT_rich Low_complexity Low_complexity 1 32 0 2403 80 3 0 chr9 82115 82416 -142189028 - AluSp SINE Alu -11 302 1 896 223 129 41 chr9 82777 83095 -142188349 - L2 LINE L2 0 3313 2968 259 315 83 19 chr9 83827 83935 -142187509 - MIR SINE MIR -64 144 30 517 244 93 52 chr9 84135 84307 -142187137 + MIR SINE MIR 63 241 -21 1286 181 49 61 chr9 85476 85802 -142185642 - MER33 DNA MER1_type -2 322 1 2345 51 10 3 chr9 85832 86126 -142185318 - AluSc SINE Alu -13 296 1 1714 153 32 23 chr9 88348 88656 -142182788 + AluJo SINE Alu 1 311 -1 587 283 34 34 chr9 88961 89166 -142182278 + MIR SINE MIR 2 206 -56 542 207 18 0 chr9 89166 89277 -142182167 + Charlie5 DNA MER1_type 2364 2476 -136 479 257 102 58 chr9 89795 90021 -142181423 - MIR SINE MIR -9 253 18 925 261 56 8 chr9 90917 91166 -142180278 - MIR SINE MIR 0 262 2 259 289 48 0 chr9 91189 91272 -142180172 - MIR SINE MIR 0 262 176 2187 126 3 3 chr9 91288 91598 -142179846 + AluSx SINE Alu 1 310 -2 1989 157 0 0 chr9 91715 92014 -142179430 + AluJo SINE Alu 1 299 -13 1784 79 9 0 chr9 92811 93040 -142178404 - AluSg/x SINE Alu 0 312 82 1520 100 27 9 chr9 93410 93630 -142177814 - MER2 DNA MER2_type 0 345 122 2220 97 0 39 chr9 93630 93938 -142177506 + AluSx SINE Alu 1 296 -16 610 286 43 78 chr9 93979 94072 -142177372 - L1ME LINE L1 -298 5823 5728 1768 158 0 29 chr9 94072 94382 -142177062 + AluJo SINE Alu 1 301 -11 610 286 43 78 chr9 94382 94662 -142176782 - L1ME LINE L1 -393 5728 5463 205 355 56 19 chr9 95407 95514 -142175930 - L2 LINE L2 0 3272 3162 264 278 70 35 chr9 95585 95700 -142175744 - MARNA DNA Mariner -91 495 377 384 321 62 33 chr9 96085 96325 -142175119 - MARNA DNA Mariner -321 265 19 1253 280 159 25 chr9 97665 98146 -142173298 - L2 LINE L2 0 3313 2898 2616 100 43 6 chr9 98146 98497 -142172947 - THE1B LTR MaLR 0 364 1 1253 280 159 25 chr9 98497 98958 -142172486 - L2 LINE L2 -415 2898 2228 24 0 0 0 chr9 99052 99076 -142172368 + AT_rich Low_complexity Low_complexity 1 24 0 349 208 38 28 chr9 99094 99200 -142172244 + L1ME4a LINE L1 5942 6048 -73 652 286 156 4 chr9 99500 99731 -142171713 + MLT1I LTR MaLR 137 402 -7 392 313 43 24 chr9 100055 100266 -142171178 - L2 LINE L2 -1369 1945 1731 28 0 0 0 chr9 100545 100573 -142170871 + AT_rich Low_complexity Low_complexity 1 28 0 663 226 14 20 chr9 100667 100813 -142170631 + MLT1C LTR MaLR 321 465 -2 * 1384 228 49 62 chr9 100813 101295 -142170149 - MLT1H LTR MaLR -28 521 1 196 358 74 12 chr9 101479 101560 -142169884 + L3b LINE CR1 1478 1563 -20 321 211 22 56 chr9 101884 101974 -142169470 - MLT1J LTR MaLR 0 511 425 26 0 0 0 chr9 101978 102004 -142169440 + AT_rich Low_complexity Low_complexity 1 26 0 45335 36 2 1 chr9 102004 108151 -142163293 - L1PA4 LINE L1 0 6155 2 663 320 50 60 chr9 108154 108591 -142162853 - MLT1J LTR MaLR -74 437 5 931 275 71 75 chr9 108746 109197 -142162247 - MLT1J2 LTR MaLR -1 449 1 2148 141 0 0 chr9 109473 109779 -142161665 + AluJb SINE Alu 1 306 -6 3564 152 37 19 chr9 110669 111261 -142160183 - MER6A DNA MER2_type -2 603 1 233 236 0 18 chr9 111293 111348 -142160096 + (CA)n Simple_repeat Simple_repeat 2 55 0 704 275 101 9 chr9 111842 112169 -142159275 - L1ME4a LINE L1 -150 5971 5615 553 210 114 54 chr9 112774 112941 -142158503 - L2 LINE L2 0 3313 3137 244 257 100 0 chr9 112939 113009 -142158435 + MIR SINE MIR 116 192 -70 * 4574 122 18 1 chr9 113194 113872 -142157572 - L1MA5A LINE L1 -3 6294 5606 372 219 0 0 chr9 113949 114013 -142157431 - FRAM/FAM SINE Alu -102 64 1 297 274 88 39 chr9 114185 114287 -142157157 + MIR3 SINE MIR 82 188 -20 30 0 0 0 chr9 114575 114605 -142156839 + AT_rich Low_complexity Low_complexity 1 30 0 314 306 209 29 chr9 114609 114815 -142156629 - MIR SINE MIR -12 250 8 2569 42 0 13 chr9 116004 116310 -142155134 + AluY SINE Alu 2 303 -8 340 236 165 16 chr9 116313 116377 -142155067 + MER112 DNA MER1_type 4 57 -203 213 39 0 0 chr9 116377 116403 -142155041 + (CA)n Simple_repeat Simple_repeat 1 26 0 340 236 165 16 chr9 116403 116520 -142154924 + MER112 DNA MER1_type 57 212 -48 323 296 80 65 chr9 116569 116768 -142154676 + L2 LINE L2 3112 3313 0 2076 119 0 10 chr9 117287 117608 -142153836 - AluSx SINE Alu 0 312 1 1825 161 10 3 chr9 118038 118330 -142153114 + AluSx SINE Alu 1 294 -18 1511 154 60 39 chr9 118339 118624 -142152820 + AluJo SINE Alu 1 291 -21 746 191 0 0 chr9 118875 119013 -142152431 - FLAM_A SINE Alu 0 140 3 2235 60 0 14 chr9 119631 119912 -142151532 - AluY SINE Alu -9 302 26 725 189 0 9 chr9 120511 120741 -142150703 + CT-rich Low_complexity Low_complexity 1 227 0 2082 105 0 52 chr9 121703 122028 -142149416 - AluSx SINE Alu -4 308 1 187 315 39 85 chr9 122733 123038 -142148406 - L2 LINE L2 -1218 2096 1806 551 191 29 0 chr9 123752 123857 -142147587 + MIR SINE MIR 89 196 -66 2269 112 0 3 chr9 124068 124373 -142147071 - AluSg SINE Alu -6 304 1 275 276 17 0 chr9 124452 124519 -142146925 - MIR SINE MIR -89 119 51 2248 83 21 3 chr9 124621 124911 -142146533 + AluSx SINE Alu 1 295 -17 409 272 61 50 chr9 126926 127106 -142144338 + MER5A DNA MER1_type 8 189 0 2456 88 0 0 chr9 127486 127794 -142143650 + AluSx SINE Alu 1 308 -4 285 245 158 50 chr9 128447 128586 -142142858 + MIR SINE MIR 36 189 -73 399 246 146 9 chr9 128885 128995 -142142449 + L2 LINE L2 3189 3313 0 967 115 23 152 chr9 129544 129612 -142141832 - MER5A DNA MER1_type 0 189 114 2351 88 3 0 chr9 129612 129917 -142141527 - AluSc SINE Alu -3 306 1 967 115 23 152 chr9 129917 130065 -142141379 - MER5A DNA MER1_type -75 114 1 2417 95 0 0 chr9 130693 130998 -142140446 - AluSx SINE Alu -7 305 1 1735 164 24 7 chr9 131125 131417 -142140027 + AluJo SINE Alu 1 297 -15 420 272 239 9 chr9 131552 131765 -142139679 + MIR SINE MIR 1 262 0 421 271 51 0 chr9 132221 132339 -142139105 + L2 LINE L2 2234 2357 -957 681 238 157 20 chr9 132594 132898 -142138546 + L1MC4a LINE L1 5531 5829 -341 460 213 28 0 chr9 132897 133005 -142138439 + L1ME2 LINE L1 5751 5861 -303 * 811 61 0 0 chr9 133108 133207 -142138237 + AluY SINE Alu 204 302 -9 22 0 0 0 chr9 133410 133432 -142138012 + AT_rich Low_complexity Low_complexity 1 22 0 1410 251 80 20 chr9 133499 134085 -142137359 - L1MEc LINE L1 -3288 2927 2307 386 0 0 39 chr9 134086 134137 -142137307 + (GAAA)n Simple_repeat Simple_repeat 2 50 0 370 157 0 0 chr9 134140 134210 -142137234 + L1PA15 LINE L1 6096 6165 0 2161 206 140 27 chr9 134223 134809 -142136635 + L1ME1 LINE L1 5379 6030 -136 487 196 47 0 chr9 134809 134916 -142136528 + L1MA10 LINE L1 6216 6327 -7 287 290 103 30 chr9 134923 135025 -142136419 - L1MEc LINE L1 -4039 2357 2264 2214 113 0 0 chr9 135025 135325 -142136119 + AluSx SINE Alu 1 300 -12 287 290 103 30 chr9 135325 136155 -142135289 - L1MEc LINE L1 -4132 2264 1248 275 287 0 0 chr9 136699 136786 -142134658 + (TA)n Simple_repeat Simple_repeat 1 87 0 2393 88 0 0 chr9 137027 137332 -142134112 - AluSq SINE Alu -8 305 1 344 364 8 8 chr9 137912 138044 -142133400 - MIR3 SINE MIR -19 189 58 279 0 0 0 chr9 138465 138496 -142132948 + (TGAA)n Simple_repeat Simple_repeat 2 32 0 466 290 45 28 chr9 138525 138701 -142132743 - MER5A DNA MER1_type 0 189 11 2199 130 0 3 chr9 139299 139606 -142131838 - AluJb SINE Alu -6 306 1 408 312 58 56 chr9 139774 140274 -142131170 - L1ME4a LINE L1 -238 5883 5385 4037 169 28 27 chr9 141162 141653 -142129791 - L1MB8 LINE L1 -14 6164 5670 2260 115 0 7 chr9 141653 141958 -142129486 - AluSx SINE Alu -9 303 1 4037 169 28 27 chr9 141958 142216 -142129228 - L1MB8 LINE L1 -508 5670 5414 269 259 0 12 chr9 144214 144238 -142127206 - L1MA10 LINE L1 0 6334 6311 673 264 48 39 chr9 144238 144469 -142126975 - L1ME1 LINE L1 -14 6152 5920 1958 126 10 14 chr9 144491 144784 -142126660 - AluJo SINE Alu -20 292 1 29 47 0 0 chr9 145514 145557 -142125887 + AT_rich Low_complexity Low_complexity 1 43 0 2145 102 3 58 chr9 145781 146106 -142125338 - AluSp SINE Alu -6 307 1 264 122 0 0 chr9 146563 146604 -142124840 + (T)n Simple_repeat Simple_repeat 1 41 0 424 300 40 27 chr9 147111 147261 -142124183 + MIR SINE MIR 20 171 -91 523 197 311 0 chr9 147529 147661 -142123783 + MER5B DNA MER1_type 5 177 -1 25 0 0 0 chr9 147673 147698 -142123746 + AT_rich Low_complexity Low_complexity 1 25 0 2259 97 0 0 chr9 147701 147989 -142123455 - AluSx SINE Alu -24 288 1 2123 127 0 0 chr9 147992 148291 -142123153 - AluSx SINE Alu -13 299 1 1924 138 7 7 chr9 148903 149209 -142122235 - AluJb SINE Alu 0 306 1 1799 153 0 32 chr9 149233 149541 -142121903 + AluJo SINE Alu 1 298 -14 349 20 40 0 chr9 149541 149591 -142121853 + (GAGAA)n Simple_repeat Simple_repeat 1 52 0 183 204 0 0 chr9 149641 149685 -142121759 + GA-rich Low_complexity Low_complexity 3 46 0 2233 283 114 20 chr9 150480 151568 -142119876 - L2 LINE L2 0 3313 2120 301 260 68 0 chr9 151607 151680 -142119764 + MER81 DNA DNA 1 78 -36 438 193 175 0 chr9 151704 151818 -142119626 - L2 LINE L2 -1297 2017 1884 270 179 36 0 chr9 151998 152054 -142119390 + MIR SINE MIR 84 141 -121 181 143 163 20 chr9 152425 152474 -142118970 + L2 LINE L2 3216 3271 -1 409 242 80 106 chr9 152481 152820 -142118624 - MLT2C1 LTR ERVL -1 396 67 * 664 179 23 37 chr9 152675 152858 -142118586 - MLT1E1 LTR MaLR -376 278 46 * 717 207 14 7 chr9 152857 153002 -142118442 - MLT2F LTR ERVL -517 146 1 2029 128 21 0 chr9 153072 153361 -142118083 + AluSx SINE Alu 1 295 -17 270 143 0 0 chr9 153718 153767 -142117677 + (TG)n Simple_repeat Simple_repeat 2 50 0 191 254 110 85 chr9 154265 154383 -142117061 + L2 LINE L2 3187 3307 -6 1476 181 26 32 chr9 154509 154818 -142116626 - AluJo SINE Alu 0 312 6 476 244 122 0 chr9 155224 155347 -142116097 + MIR SINE MIR 11 148 -114 1868 155 0 24 chr9 155347 155501 -142115943 + MER46B DNA MER2_type 1 19 -2712 2216 157 23 0 chr9 155501 155852 -142115592 - L1PB4 LINE L1 0 6156 5798 1868 155 0 24 chr9 155852 156026 -142115418 + MER46B DNA MER2_type 19 196 -40 307 235 133 10 chr9 156044 156142 -142115302 + MIR SINE MIR 148 257 -5 4138 83 13 0 chr9 156674 157205 -142114239 + L1PA14 LINE L1 5624 6161 0 336 228 238 0 chr9 158997 159098 -142112346 + MIR SINE MIR 16 140 -122 233 200 0 0 chr9 159197 159237 -142112207 - MIR SINE MIR -6 256 217 796 191 0 22 chr9 159993 160129 -142111315 + FLAM_A SINE Alu 1 133 0 773 308 76 0 chr9 160421 160658 -142110786 + MIR SINE MIR 6 260 -2 733 276 43 30 chr9 160669 160901 -142110543 - MIR SINE MIR -22 240 6 23 0 0 0 chr9 161708 161731 -142109713 + AT_rich Low_complexity Low_complexity 1 23 0 2072 143 56 30 chr9 161736 162233 -142109211 - L1MC2 LINE L1 0 6344 5752 1482 123 45 18 chr9 162270 162490 -142108954 - MER30 DNA MER1_type 0 230 5 580 278 88 10 chr9 163557 163863 -142107581 - L1ME4a LINE L1 -202 5919 5590 1887 155 3 26 chr9 163882 164191 -142107253 + AluJo SINE Alu 2 303 -9 2374 71 6 52 chr9 164191 164514 -142106930 + AluSp SINE Alu 1 309 -4 346 274 110 51 chr9 164630 164922 -142106522 - L1ME4a LINE L1 -748 5398 5090 183 42 0 0 chr9 165544 165568 -142105876 + (GGAGAA)n Simple_repeat Simple_repeat 3 26 0 398 315 144 27 chr9 166248 166546 -142104898 - L1ME LINE L1 -311 5810 5478 1767 193 34 70 chr9 166671 166978 -142104466 + L1ME1 LINE L1 5594 5880 -286 2418 102 0 0 chr9 166978 167282 -142104162 + AluSx SINE Alu 1 304 -8 1767 193 34 70 chr9 167282 167446 -142103998 + L1ME1 LINE L1 5880 6048 -118 230 243 71 0 chr9 169197 169267 -142102177 + GA-rich Low_complexity Low_complexity 2 76 0 470 322 38 17 chr9 169274 169470 -142101974 - MIR SINE MIR -59 203 3 2174 132 0 0 chr9 170243 170553 -142100891 + AluSx SINE Alu 1 310 -2 244 237 103 52 chr9 170592 170689 -142100755 - MIR3 SINE MIR -10 198 97 324 0 0 0 chr9 170719 170755 -142100689 + (TG)n Simple_repeat Simple_repeat 2 37 0 1370 142 0 5 chr9 171459 171663 -142099781 - AluJb SINE Alu -109 203 1 2413 64 7 3 chr9 171840 172136 -142099308 + AluY SINE Alu 1 297 -14 10681 213 63 13 chr9 172537 174947 -142096497 + L1PA16 LINE L1 3078 5566 -600 1746 152 6 108 chr9 174947 175282 -142096162 + AluJo SINE Alu 1 301 -1 10681 213 63 13 chr9 175282 175916 -142095528 + L1PA16 LINE L1 5566 6166 0 734 303 49 12 chr9 177117 177361 -142094083 + MIR SINE MIR 10 262 0 2494 62 0 10 chr9 177377 177685 -142093759 - AluY SINE Alu -6 305 1 725 188 17 15 chr9 177889 178162 -142093282 + L1MB3 LINE L1 5657 6123 -60 199 267 67 0 chr9 178167 178227 -142093217 - MIR SINE MIR -118 144 81 389 229 59 20 chr9 178556 178709 -142092735 - LTR33A LTR ERVL -25 498 340 843 190 49 33 chr9 178716 178900 -142092544 - MER5A DNA MER1_type 0 189 3 773 236 170 66 chr9 178906 179350 -142092094 - LTR50 LTR ERVL -210 585 17 2541 77 6 0 chr9 179447 179758 -142091686 - AluSp SINE Alu 0 313 1 4660 115 27 3 chr9 179779 180448 -142090996 + L1MA5 LINE L1 5609 6293 -7 529 307 63 31 chr9 180653 180762 -142090682 - L1ME4a LINE L1 -179 5942 5838 2225 98 0 7 chr9 180762 181057 -142090387 - AluSc SINE Alu -16 293 1 529 307 63 31 chr9 181057 181296 -142090148 - L1ME4a LINE L1 -283 5838 5583 264 150 0 0 chr9 182033 182073 -142089371 - Alu SINE Alu -19 283 244 2258 105 3 0 chr9 182086 182381 -142089063 + AluSq SINE Alu 1 296 -17 2199 86 0 7 chr9 182570 182848 -142088596 - AluSq SINE Alu -24 289 14 589 218 58 13 chr9 182917 183073 -142088371 + MLT1E LTR MaLR 1 163 -430 1952 135 7 3 chr9 183104 183400 -142088044 + AluSx SINE Alu 1 297 -15 1222 186 4 52 chr9 183404 183652 -142087792 - AluJo SINE Alu -76 236 1 1699 158 63 26 chr9 185607 185956 -142085488 + L1MA7 LINE L1 5880 6241 -50 525 141 10 10 chr9 185951 186050 -142085394 + L1MA7 LINE L1 6192 6290 -1 * 266 160 64 85 chr9 187157 187251 -142084193 - MLT1K LTR MaLR -16 572 481 1407 205 45 40 chr9 187458 187892 -142083552 + L1MC5 LINE L1 7499 7917 -44 791 274 45 0 chr9 189525 189726 -142081718 - MER63A DNA MER1_type 0 210 1 398 304 142 28 chr9 189781 190028 -142081416 - Charlie8 DNA MER1_type -2141 276 2 314 227 23 34 chr9 190159 190247 -142081197 - Charlie7 DNA MER1_type -2500 112 26 183 333 32 11 chr9 190498 190591 -142080853 + MIR3 SINE MIR 108 202 -6 1691 156 53 11 chr9 191115 191397 -142080047 + AluJo SINE Alu 1 294 -18 324 285 27 97 chr9 192009 192195 -142079249 - MER5A DNA MER1_type -11 178 6 460 344 81 9 chr9 194526 194747 -142076697 + MIR SINE MIR 20 256 -6 2128 136 0 0 chr9 194911 195213 -142076231 + AluSq SINE Alu 1 302 -11 2984 114 21 44 chr9 195285 195319 -142076125 - L1MB3 LINE L1 -11 6172 6139 2380 93 3 0 chr9 195319 195621 -142075823 - AluSg SINE Alu -7 303 1 2984 114 21 44 chr9 195621 196068 -142075376 - L1MB3 LINE L1 -44 6139 5702 327 328 39 56 chr9 196071 196251 -142075193 - MIR SINE MIR -39 223 47 2916 105 36 27 chr9 196929 197367 -142074077 - L1PB3 LINE L1 0 6154 5713 682 260 136 41 chr9 198466 198517 -142072927 - MLT1J1 LTR MaLR -10 440 395 1345 128 11 0 chr9 198517 198704 -142072740 - MER5A DNA MER1_type 0 189 1 682 260 136 41 chr9 198704 199026 -142072418 - MLT1J1 LTR MaLR -55 395 64 1885 155 3 13 chr9 199493 199797 -142071647 - AluJb SINE Alu -11 301 1 472 297 34 7 chr9 200454 200602 -142070842 + MIR SINE MIR 29 180 -82 2270 109 3 6 chr9 201039 201352 -142070092 - AluSq SINE Alu -1 312 1 205 233 233 58 chr9 202575 202747 -142068697 + MIR SINE MIR 49 250 -12 221 240 180 80 chr9 203232 203332 -142068112 + L2 LINE L2 3153 3262 -10 494 239 127 29 chr9 204152 204466 -142066978 - L1ME4a LINE L1 -6 6115 5771 1792 184 3 3 chr9 204749 205058 -142066386 - AluJo SINE Alu -3 309 1 2436 81 0 0 chr9 205420 205716 -142065728 + AluY SINE Alu 1 296 -15 2227 109 3 3 chr9 206904 207206 -142064238 + AluSx SINE Alu 5 306 -6 431 283 17 52 chr9 208909 208932 -142062512 + MIR SINE MIR 93 115 -147 2495 142 60 0 chr9 208932 209334 -142062110 - MSTC LTR MaLR -2 426 1 431 283 17 52 chr9 209334 209483 -142061961 + MIR SINE MIR 115 259 -3 1108 172 8 64 chr9 209773 209974 -142061470 + L1MB2 LINE L1 5933 6119 -52 2350 94 7 0 chr9 209974 210272 -142061172 + AluSx SINE Alu 1 300 -12 1108 172 8 64 chr9 210272 210320 -142061124 + L1MB2 LINE L1 6119 6168 -3 192 212 142 80 chr9 210515 210628 -142060816 + MIR SINE MIR 84 203 -59 312 308 0 0 chr9 210740 210831 -142060613 + L3 LINE CR1 1272 1362 -215 2322 94 0 3 chr9 211617 211914 -142059530 - AluSc SINE Alu -13 296 1 194 217 0 22 chr9 212000 212046 -142059398 - MIR3 SINE MIR -29 179 135 2010 148 3 0 chr9 212440 212744 -142058700 + AluSx SINE Alu 1 305 -7 722 229 71 0 chr9 213155 213338 -142058106 + MER3 DNA MER1_type 9 204 -5 3671 108 19 23 chr9 213806 214335 -142057109 + MER1A DNA MER1_type 1 527 0 234 105 0 0 chr9 214381 214419 -142057025 + (T)n Simple_repeat Simple_repeat 1 38 0 2335 106 0 0 chr9 214562 214864 -142056580 - AluSg SINE Alu -4 306 5 427 304 130 20 chr9 214870 215169 -142056275 - L1ME3 LINE L1 -337 5825 5494 226 225 8 150 chr9 215196 215316 -142056128 - MIR3 SINE MIR -28 180 78 1303 199 68 14 chr9 215318 215599 -142055845 + AluJo SINE Alu 1 296 -16 2103 111 3 24 chr9 216866 217163 -142054281 + AluSq SINE Alu 1 291 -22 234 0 0 0 chr9 217870 217897 -142053547 + MADE1 DNA Mariner 1 27 -53 1946 141 7 7 chr9 219324 219623 -142051821 + AluJb SINE Alu 3 301 -11 1523 193 4 7 chr9 222209 222484 -142048960 - AluJo SINE Alu -10 302 29 2244 90 7 3 chr9 224562 224850 -142046594 + AluSg SINE Alu 1 289 -21 248 258 32 0 chr9 225097 225159 -142046285 - L2 LINE L2 0 3272 3209 1962 112 0 0 chr9 226150 226410 -142045034 + AluSq SINE Alu 1 260 -53 1260 215 72 99 chr9 226566 227120 -142044324 - MLT1F1 LTR MaLR 0 567 29 2321 104 3 3 chr9 227293 227602 -142043842 - AluSc SINE Alu 0 309 1 2507 69 0 7 chr9 228347 228653 -142042791 + AluY SINE Alu 1 304 -7 234 91 0 0 chr9 229552 229585 -142041859 + (TC)n Simple_repeat Simple_repeat 2 34 0 1820 128 21 52 chr9 230171 230490 -142040954 - AluJo SINE Alu 0 314 5 2303 122 0 0 chr9 230667 230979 -142040465 + AluSx SINE Alu 1 312 0 276 242 333 0 chr9 231082 231202 -142040242 - MER5A DNA MER1_type 0 189 30 410 276 35 8 chr9 231363 231518 -142039926 + MIR SINE MIR 8 169 -62 189 0 0 0 chr9 231904 231925 -142039519 + (A)n Simple_repeat Simple_repeat 1 21 0 2315 112 0 10 chr9 232134 232446 -142038998 + AluSx SINE Alu 1 309 -3 1551 188 3 30 chr9 232978 233276 -142038168 + AluJo SINE Alu 1 290 -22 339 255 0 21 chr9 235723 235817 -142035627 + MIR3 SINE MIR 95 186 -22 412 239 99 59 chr9 236214 236436 -142035008 + L1ME4a LINE L1 5685 5915 -206 1903 168 0 13 chr9 236451 236760 -142034684 + AluJb SINE Alu 1 305 -7 305 329 264 3 chr9 237010 237391 -142034053 - L2 LINE L2 -223 3049 2575 315 268 12 0 chr9 237766 237848 -142033596 - MIR SINE MIR -149 113 31 849 242 19 53 chr9 239046 239310 -142032134 + MIR SINE MIR 8 262 0 530 183 23 53 chr9 239358 239489 -142031955 - L2 LINE L2 0 3313 3187 30 45 0 0 chr9 240740 240784 -142030660 + AT_rich Low_complexity Low_complexity 1 44 0 2167 96 55 0 chr9 240909 241200 -142030244 - AluSq SINE Alu 0 313 7 445 279 85 42 chr9 241386 241551 -142029893 + MER91A DNA MER1_type 1 172 -24 1943 148 7 3 chr9 241906 242203 -142029241 - AluJb SINE Alu -14 298 1 664 154 36 0 chr9 244892 245002 -142026442 + AluSq SINE Alu 41 154 -159 2156 79 0 8 chr9 245003 245294 -142026150 + AluSx SINE Alu 21 309 0 878 203 89 54 chr9 245385 245701 -142025743 - L1MC5 LINE L1 -182 7779 7453 380 278 71 35 chr9 246057 246226 -142025218 + MIR SINE MIR 34 208 -54 1296 164 80 42 chr9 246325 246554 -142024890 + MER33 DNA MER1_type 1 247 -2338 1996 154 0 13 chr9 246554 246866 -142024578 - AluJo SINE Alu -4 308 1 1296 164 80 42 chr9 246866 246947 -142024497 + MER33 DNA MER1_type 247 323 -1 596 312 63 28 chr9 246964 247281 -142024163 - MER102b DNA MER1_type -8 333 6 244 261 22 80 chr9 247674 247812 -142023632 - MIR3 SINE MIR -3 205 76 2055 137 3 0 chr9 247815 248100 -142023344 + AluJb SINE Alu 1 286 -26 720 183 92 0 chr9 249737 249879 -142021565 - L1MB7 LINE L1 -44 6140 5986 343 285 51 0 chr9 251055 251192 -142020252 - L2 LINE L2 -212 3060 2917 240 192 51 51 chr9 251491 251569 -142019875 - MER5A DNA MER1_type -98 91 14 406 241 76 45 chr9 252107 252307 -142019137 + AluSx SINE Alu 2 197 -105 405 258 111 42 chr9 252307 252490 -142018954 + AluSx SINE Alu 2 197 -105 427 256 110 42 chr9 252490 252921 -142018523 + AluSx SINE Alu 2 204 -98 1795 164 0 11 chr9 252921 253201 -142018243 + AluJo SINE Alu 6 282 -30 225 0 0 0 chr9 253204 253229 -142018215 + (CAAA)n Simple_repeat Simple_repeat 2 26 0 2044 143 0 13 chr9 253774 254074 -142017370 + AluJb SINE Alu 1 296 -16 605 254 54 22 chr9 254227 254412 -142017032 + Charlie8 DNA MER1_type 86 276 -2141 2349 93 3 19 chr9 255218 255353 -142016091 + AluSq SINE Alu 1 137 -176 2226 108 10 0 chr9 255353 255649 -142015795 + AluSq SINE Alu 1 299 -14 2349 93 3 19 chr9 255649 255826 -142015618 + AluSq SINE Alu 137 308 -5 1701 185 83 0 chr9 255928 256291 -142015153 - L1MC3 LINE L1 0 7785 7393 324 169 0 101 chr9 256298 256387 -142015057 - L1MB7 LINE L1 -19 6165 6086 255 330 10 0 chr9 256565 256665 -142014779 + MIR SINE MIR 35 135 -73 2488 68 0 0 chr9 256735 257043 -142014401 + AluY SINE Alu 1 308 -3 230 241 0 0 chr9 257086 257140 -142014304 + MER116 DNA Mariner 2 55 -25 798 173 20 0 chr9 257145 257295 -142014149 - MER63B DNA MER1_type 0 434 282 1060 188 73 0 chr9 257295 257513 -142013931 + L1MD3 LINE L1 7730 7963 -32 976 235 91 30 chr9 257515 257813 -142013631 - MER63B DNA MER1_type -118 318 3 24 53 0 0 chr9 257911 257949 -142013495 + AT_rich Low_complexity Low_complexity 1 38 0 1126 140 62 6 chr9 258720 258899 -142012545 - MER5A DNA MER1_type 0 189 1 2253 112 3 0 chr9 259262 259566 -142011878 + AluSx SINE Alu 1 305 -7 2117 127 3 13 chr9 260654 260954 -142010490 - AluSx SINE Alu -15 297 1 446 333 0 0 chr9 261202 261316 -142010128 + MER81 DNA DNA 1 114 0 400 278 21 35 chr9 261612 261665 -142009779 - MIR3 SINE MIR -2 206 154 698 185 204 0 chr9 261665 261693 -142009751 + MER5A DNA MER1_type 1 22 -167 261 0 0 0 chr9 261693 261722 -142009722 + (CAG)n Simple_repeat Simple_repeat 1 29 0 698 185 204 0 chr9 261722 261834 -142009610 + MER5A DNA MER1_type 22 178 -11 1630 134 37 50 chr9 261834 262133 -142009311 + AluJb SINE Alu 1 295 -17 698 185 204 0 chr9 262133 262148 -142009296 + MER5A DNA MER1_type 178 189 0 400 278 21 35 chr9 262148 262238 -142009206 - MIR3 SINE MIR -54 154 65 783 293 120 34 chr9 262749 263561 -142007883 + L2 LINE L2 2432 3312 -1 207 0 0 0 chr9 263922 263945 -142007499 + (T)n Simple_repeat Simple_repeat 1 23 0 2184 121 3 0 chr9 263957 264254 -142007190 + AluSq SINE Alu 1 298 -15 223 298 120 51 chr9 264516 264674 -142006770 + MER5A DNA MER1_type 5 173 -16 217 278 90 62 chr9 264548 264692 -142006752 - MER5A DNA MER1_type -27 162 15 * 1283 152 5 0 chr9 265018 265215 -142006229 + AluJo SINE Alu 114 311 -1 417 191 35 71 chr9 265450 265591 -142005853 - MIR SINE MIR 0 262 127 691 320 39 48 chr9 265889 266404 -142005040 - LTR33 LTR ERVL -4 517 8 315 0 0 0 chr9 267632 267667 -142003777 + (TAG)n Simple_repeat Simple_repeat 1 35 0 230 179 0 15 chr9 267957 268024 -142003420 + (TA)n Simple_repeat Simple_repeat 2 67 0 307 147 0 44 chr9 269040 269108 -142002336 + L1ME4a LINE L1 6056 6120 -1 1586 128 4 32 chr9 269223 269472 -142001972 + AluSx SINE Alu 62 303 -9 1175 222 15 11 chr9 269487 269507 -142001937 + L1MC4 LINE L1 7775 7793 -249 2095 123 0 3 chr9 269507 269799 -142001645 + AluSx SINE Alu 1 291 -21 1175 222 15 11 chr9 269799 270044 -142001400 + L1MC4 LINE L1 7793 8041 -1 299 335 49 18 chr9 270149 270313 -142001131 - MIR SINE MIR -40 222 54 23 33 0 0 chr9 270636 270666 -142000778 + AT_rich Low_complexity Low_complexity 1 30 0 358 205 134 0 chr9 270940 271052 -142000392 + L1ME4a LINE L1 5879 6005 -116 1017 151 0 2 chr9 271991 272651 -141998793 + (CCA)n Simple_repeat Simple_repeat 2 836 0 1113 138 0 0 chr9 272664 273205 -141998239 + (CCA)n Simple_repeat Simple_repeat 1 541 0 226 354 13 0 chr9 273225 273304 -141998140 + MIR SINE MIR 66 145 -63 1873 219 54 46 chr9 273305 273845 -141997599 - LTR55 LTR ERV -4 544 1 262 167 0 0 chr9 273894 273936 -141997508 + 5S rRNA rRNA 1 42 -79 286 290 9 19 chr9 274288 274395 -141997049 + CT-rich Low_complexity Low_complexity 2 107 0 328 333 57 0 chr9 274418 274541 -141996903 + MIR3 SINE MIR 31 160 -48 2128 122 3 0 chr9 274995 275289 -141996155 - AluSx SINE Alu -17 295 1 1964 110 15 15 chr9 275702 275959 -141995485 + AluSx SINE Alu 21 277 -35 315 0 0 0 chr9 275959 275994 -141995450 + (TC)n Simple_repeat Simple_repeat 2 36 0 * 870 83 0 0 chr9 275993 276113 -141995331 + (TA)n Simple_repeat Simple_repeat 1 120 0 1964 110 15 15 chr9 275994 276127 -141995317 + AluSx SINE Alu 276 292 -20 301 205 70 123 chr9 277506 277677 -141993767 + MER103 DNA DNA 3 164 -2 1803 159 23 7 chr9 278312 278614 -141992830 + AluSx SINE Alu 1 307 -5 219 292 22 0 chr9 278835 278924 -141992520 + MIR SINE MIR 81 171 -91 398 174 61 98 chr9 279846 279978 -141991466 - L2 LINE L2 0 3313 3187 345 140 0 0 chr9 280962 281019 -141990425 + (CA)n Simple_repeat Simple_repeat 2 58 0 21 57 0 0 chr9 281639 281674 -141989770 + AT_rich Low_complexity Low_complexity 1 35 0 3550 43 86 0 chr9 281682 282103 -141989341 - L1PA5 LINE L1 0 6154 5698 491 36 0 0 chr9 282103 282159 -141989285 + L1PA5 LINE L1 5654 5709 -445 544 256 145 0 chr9 282227 282434 -141989010 - L1ME3 LINE L1 -2 6160 5924 569 251 74 39 chr9 282435 282666 -141988778 - L1ME3 LINE L1 -279 5883 5645 8724 196 42 51 chr9 282761 283231 -141988213 + L1MB7 LINE L1 3077 3550 -2634 2143 114 0 0 chr9 283231 283512 -141987932 + AluSq SINE Alu 1 281 -32 198 0 0 0 chr9 283515 283537 -141987907 + (TAA)n Simple_repeat Simple_repeat 2 23 0 8724 196 42 51 chr9 283537 284221 -141987223 + L1MB7 LINE L1 3552 4240 -1944 1976 159 0 6 chr9 284221 284535 -141986909 + AluJb SINE Alu 1 312 0 8724 196 42 51 chr9 284535 285958 -141985486 + L1MB7 LINE L1 4240 5624 -560 2105 101 38 7 chr9 285958 286246 -141985198 + AluSq SINE Alu 1 297 -16 8724 196 42 51 chr9 286246 286496 -141984948 + L1MB7 LINE L1 5624 5875 -309 238 266 78 0 chr9 286499 286563 -141984881 - MIR SINE MIR -192 70 2 185 293 86 0 chr9 286639 286697 -141984747 - MIR SINE MIR -198 64 2 202 276 86 0 chr9 286706 286764 -141984680 - MIR SINE MIR -198 64 2 247 271 18 53 chr9 287173 287278 -141984166 - Charlie7 DNA MER1_type -1 2611 2513 213 39 0 0 chr9 287278 287304 -141984140 + (TTCA)n Simple_repeat Simple_repeat 3 28 0 247 271 18 53 chr9 287304 287368 -141984076 - Charlie7 DNA MER1_type -99 2513 2448 204 206 0 0 chr9 287760 287794 -141983650 + (CGTG)n Simple_repeat Simple_repeat 4 37 0 353 338 54 39 chr9 288726 288930 -141982514 + MIR SINE MIR 19 225 -37 1803 130 45 0 chr9 289113 289406 -141982038 + AluSx SINE Alu 1 305 0 2111 109 26 13 chr9 290364 290668 -141980776 - AluSx SINE Alu -4 308 1 748 226 164 47 chr9 294592 294814 -141976630 + L1ME4a LINE L1 5666 5861 -260 2283 96 0 0 chr9 294814 295107 -141976337 + AluSx SINE Alu 12 304 -8 748 226 164 47 chr9 295107 295292 -141976152 + L1ME4a LINE L1 5861 6121 0 22 70 0 0 chr9 295692 295735 -141975709 + AT_rich Low_complexity Low_complexity 1 43 0 21 0 0 0 chr9 296226 296247 -141975197 + AT_rich Low_complexity Low_complexity 1 21 0 729 229 38 0 chr9 296307 296464 -141974980 + MER5B DNA MER1_type 1 163 -15 2138 152 0 0 chr9 296500 296810 -141974634 - AluJb SINE Alu -2 310 1 646 142 21 57 chr9 296811 296952 -141974492 + L1MB4 LINE L1 6045 6180 0 1475 173 51 19 chr9 296986 297299 -141974145 + MER33 DNA MER1_type 2 324 0 2509 68 0 0 chr9 297351 297659 -141973785 + AluYb8 SINE Alu 1 308 -10 271 100 0 0 chr9 297668 297708 -141973736 + L1MB4 LINE L1 6132 6171 -9 1124 123 59 0 chr9 297709 297879 -141973565 + AluJo SINE Alu 125 304 -8 280 304 109 38 chr9 299403 299587 -141971857 + MER117 DNA MER1_type 1 197 0 2052 120 3 0 chr9 301061 301367 -141970077 - AluSx SINE Alu 0 307 1 2030 157 3 0 chr9 302193 302499 -141968945 + AluSx SINE Alu 1 307 -5 1867 126 55 14 chr9 302502 302795 -141968649 + AluSx SINE Alu 3 307 -5 1750 164 7 20 chr9 302969 303274 -141968170 - AluJo SINE Alu -11 301 1 1843 134 22 0 chr9 303615 303891 -141967553 - AluSx SINE Alu -18 294 13 228 204 20 0 chr9 304479 304528 -141966916 + (TA)n Simple_repeat Simple_repeat 1 50 0 29 47 0 0 chr9 306278 306321 -141965123 + AT_rich Low_complexity Low_complexity 1 43 0 1189 142 32 41 chr9 307105 307324 -141964120 + MER20 DNA MER1_type 1 217 -2 268 242 94 94 chr9 307446 307574 -141963870 - MIR SINE MIR -50 212 85 21 0 0 0 chr9 308635 308656 -141962788 + AT_rich Low_complexity Low_complexity 1 21 0 941 261 97 44 chr9 309220 309633 -141961811 - MLT1K LTR MaLR -25 563 129 262 232 58 29 chr9 310236 310305 -141961139 + 7SK RNA RNA 7 77 -116 686 296 16 0 chr9 310307 310496 -141960948 + MER117 DNA MER1_type 5 196 -1 533 289 16 0 chr9 310614 310735 -141960709 + MER96 DNA MER1_type? 50 172 -3 293 246 14 0 chr9 311751 311820 -141959624 - MIR SINE MIR -111 151 82 2123 132 0 3 chr9 312120 312416 -141959028 - AluSx SINE Alu -13 299 5 22 0 0 0 chr9 312570 312592 -141958852 + AT_rich Low_complexity Low_complexity 1 22 0 1728 174 23 7 chr9 312830 313134 -141958310 - AluJo SINE Alu -3 309 1 702 302 60 8 chr9 315803 316051 -141955393 - MIR SINE MIR 0 262 2 1111 263 143 52 chr9 316245 316436 -141955008 - MER21B LTR ERV1 -154 709 537 270 0 0 0 chr9 316436 316466 -141954978 + (TAA)n Simple_repeat Simple_repeat 2 31 0 1111 263 143 52 chr9 316466 316924 -141954520 - MER21B LTR ERV1 -326 537 1 1617 218 40 17 chr9 317608 318127 -141953317 - L1ME1 LINE L1 -28 6138 5441 38 107 0 0 chr9 318905 319055 -141952389 + AT_rich Low_complexity Low_complexity 1 150 0 203 0 37 0 chr9 320136 320163 -141951281 + (TTTCC)n Simple_repeat Simple_repeat 2 29 0 1663 156 13 49 chr9 320195 320503 -141950941 - AluJo SINE Alu -10 302 6 2233 131 12 72 chr9 320563 320968 -141950476 - MLT1B LTR MaLR -7 383 3 2142 117 3 0 chr9 321169 321477 -141949967 + AluSp SINE Alu 1 309 0 340 307 136 6 chr9 321524 321700 -141949744 + MIR SINE MIR 20 218 -44 2172 128 7 0 chr9 323132 323438 -141948006 + AluSx SINE Alu 2 309 -3 1822 162 7 3 chr9 323442 323739 -141947705 + AluJb SINE Alu 1 298 -14 315 167 0 62 chr9 323975 324071 -141947373 - L1MC4 LINE L1 -1339 6703 6614 225 0 0 0 chr9 324078 324103 -141947341 + (T)n Simple_repeat Simple_repeat 1 25 0 1096 176 11 0 chr9 324252 324439 -141947005 + MER5A DNA MER1_type 1 189 0 461 253 15 32 chr9 324521 324679 -141946765 - MIR SINE MIR -56 152 28 2142 148 0 0 chr9 325523 325827 -141945617 - AluSx SINE Alu -8 304 1 444 132 15 0 chr9 325829 325897 -141945547 - AluJo SINE Alu -178 134 66 31 26 0 0 chr9 325909 325947 -141945497 + AT_rich Low_complexity Low_complexity 1 38 0 1556 135 135 17 chr9 326302 326598 -141944846 + MER44D DNA MER2_type 1 601 -8 574 203 104 12 chr9 327253 327313 -141944131 - MER5A DNA MER1_type -3 186 133 2001 111 3 51 chr9 327313 327629 -141943815 + AluJb SINE Alu 1 301 -11 574 203 104 12 chr9 327629 327731 -141943713 - MER5A DNA MER1_type -56 133 9 213 65 0 0 chr9 327868 327899 -141943545 + (TAAA)n Simple_repeat Simple_repeat 2 32 0 298 113 75 0 chr9 328011 328064 -141943380 - L2 LINE L2 0 3313 3257 392 216 18 9 chr9 328209 328320 -141943124 + L1MB8 LINE L1 6064 6175 -3 760 249 72 17 chr9 329299 329536 -141941908 + MIR SINE MIR 2 251 -11 366 275 36 22 chr9 329685 329823 -141941621 + MIR3 SINE MIR 30 169 -39 932 263 22 0 chr9 329913 330141 -141941303 - MIR SINE MIR -29 233 1 813 234 202 55 chr9 330151 330586 -141940858 - MLT1J LTR MaLR -12 499 1 1832 156 10 10 chr9 330629 330917 -141940527 + AluJb SINE Alu 1 288 -24 311 150 62 0 chr9 331542 331612 -141939832 - MLT1G LTR MaLR -5 590 482 577 267 241 12 chr9 331803 332156 -141939288 - MLT1G LTR MaLR -196 394 1 270 192 55 27 chr9 332192 332265 -141939179 - MIR SINE MIR -70 192 118 646 238 70 70 chr9 333348 333628 -141937816 - L1MEd LINE L1 -4897 1222 940 2030 159 0 6 chr9 333628 333942 -141937502 - AluJb SINE Alu 0 312 1 646 238 70 70 chr9 333942 333989 -141937455 - L1MEd LINE L1 -5178 941 895 578 308 81 65 chr9 334009 334913 -141936531 - L1MEd LINE L1 -5191 928 11 435 303 86 6 chr9 334963 335138 -141936306 + MIR SINE MIR 49 237 -25 908 181 6 6 chr9 335211 335371 -141936073 + FRAM SINE Alu 1 160 -6 387 302 0 9 chr9 335399 335515 -141935929 - MER5B DNA MER1_type -58 120 6 197 95 0 24 chr9 336043 336085 -141935359 + (TTTG)n Simple_repeat Simple_repeat 2 42 0 24 0 0 0 chr9 337282 337306 -141934138 + AT_rich Low_complexity Low_complexity 1 24 0 319 222 72 105 chr9 338077 338230 -141933214 + L2 LINE L2 3166 3313 0 1321 158 59 65 chr9 338255 338332 -141933112 - MER33 DNA MER1_type -2263 322 246 2037 137 0 14 chr9 338332 338624 -141932820 + AluJb SINE Alu 1 288 -24 1321 158 59 65 chr9 338624 338868 -141932576 - MER33 DNA MER1_type -2339 246 3 2347 86 0 0 chr9 339635 339925 -141931519 - AluSx SINE Alu -10 302 13 2259 56 3 25 chr9 339981 340311 -141931133 + AluY SINE Alu 2 325 0 1871 158 36 7 chr9 340315 340618 -141930826 + AluJo SINE Alu 1 312 0 269 307 70 26 chr9 341076 341190 -141930254 + MIR SINE MIR 29 147 -61 1090 221 45 5 chr9 343722 343944 -141927500 + AluJo SINE Alu 2 232 -80 581 186 57 44 chr9 344612 344778 -141926666 + MLT1H LTR MaLR 66 242 -307 570 226 17 0 chr9 344779 344894 -141926550 - MER45A DNA AcHobo -1 177 61 283 340 107 15 chr9 345205 345402 -141926042 - MIR SINE MIR -23 239 25 2281 103 0 0 chr9 345803 346093 -141925351 - AluSc SINE Alu -14 295 6 354 313 157 35 chr9 346396 346626 -141924818 + MIR SINE MIR 5 262 0 3671 162 15 5 chr9 347022 347613 -141923831 + MER50 LTR ERV1 1 597 -137 2248 90 66 0 chr9 347613 347945 -141923499 + MER4E LTR ERV1 1 354 -425 1639 143 0 8 chr9 347947 348214 -141923230 - AluSx SINE Alu 0 306 42 325 43 0 0 chr9 348214 348261 -141923183 + AluSp/q SINE Alu 253 299 -4 2363 90 0 7 chr9 348339 348639 -141922805 + AluSx SINE Alu 1 298 -14 885 125 42 0 chr9 351022 351166 -141920278 - AluSq SINE Alu -12 301 152 280 221 26 13 chr9 351341 351418 -141920026 - MLT1K LTR MaLR -2 586 509 207 271 21 42 chr9 351569 351665 -141919779 - MIR SINE MIR -101 161 68 186 365 129 0 chr9 352797 352882 -141918562 + L3 LINE CR1 1432 1527 -50 2180 136 48 8 chr9 353023 353375 -141918069 - MER47A DNA MER2_type 0 366 1 203 27 0 81 chr9 353381 353418 -141918026 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 845 107 0 0 chr9 353849 353961 -141917483 + FRAM SINE Alu 52 163 -13 358 305 94 24 chr9 354496 354709 -141916735 - MIR SINE MIR -3 259 32 2454 169 69 9 chr9 354913 355374 -141916070 + MER44D DNA MER2_type 59 602 -3 472 262 7 35 chr9 355394 355535 -141915909 - MER5B DNA MER1_type -22 156 20 287 349 0 0 chr9 355587 355696 -141915748 + MIR SINE MIR 84 192 -70 418 253 108 6 chr9 356366 356532 -141914912 + MIR SINE MIR 60 242 -20 793 261 48 102 chr9 357197 357395 -141914049 + MLT1K LTR MaLR 74 281 -307 563 173 58 14 chr9 357395 357534 -141913910 - L1MB8 LINE L1 -1 6177 6033 793 261 48 102 chr9 357534 357691 -141913753 + MLT1K LTR MaLR 281 395 -193 2357 101 10 0 chr9 357691 357998 -141913446 + AluSx SINE Alu 1 310 -2 793 261 48 102 chr9 357998 358161 -141913283 + MLT1K LTR MaLR 395 565 -23 192 125 0 0 chr9 358443 358475 -141912969 + (CAT)n Simple_repeat Simple_repeat 2 33 0 1064 245 4 16 chr9 358481 358730 -141912714 - MIR SINE MIR -15 247 2 2223 133 23 8 chr9 359274 359626 -141911818 + MER47A DNA MER2_type 1 357 -9 277 319 81 56 chr9 360578 360738 -141910706 + MIR SINE MIR 34 197 -65 276 233 200 25 chr9 361002 361122 -141910322 + MIR3 SINE MIR 6 146 -62 262 316 34 34 chr9 361168 361285 -141910159 + L2 LINE L2 3197 3313 0 564 149 0 0 chr9 361462 361549 -141909895 + MER53 DNA DNA 3 89 -100 476 188 0 0 chr9 361482 361567 -141909877 - MER53 DNA DNA -12 177 93 * 241 271 156 0 chr9 361741 361837 -141909607 + MIR SINE MIR 152 262 0 1515 189 7 28 chr9 362320 362635 -141908809 + AluJo SINE Alu 1 309 0 1065 224 74 82 chr9 362820 363059 -141908385 - L2 LINE L2 -1 3312 3073 1854 178 0 3 chr9 363059 363357 -141908087 - AluJo SINE Alu -11 301 5 1065 224 74 82 chr9 363357 363371 -141908073 - L2 LINE L2 -240 3073 3060 2306 95 0 3 chr9 363371 363667 -141907777 - AluSc SINE Alu -14 295 1 1065 224 74 82 chr9 363667 363805 -141907639 - L2 LINE L2 -253 3060 2922 2440 130 5 19 chr9 363805 364174 -141907270 + THE1B LTR MaLR 1 364 0 1065 224 74 82 chr9 364174 364267 -141907177 - L2 LINE L2 -391 2922 2830 482 215 30 122 chr9 364487 364724 -141906720 + MIR SINE MIR 48 262 0 2448 83 3 13 chr9 364843 365156 -141906288 + AluSp SINE Alu 1 310 -3 1701 210 81 79 chr9 365180 365655 -141905789 + MLT1F LTR MaLR 35 513 -29 2248 92 31 0 chr9 365655 365947 -141905497 - AluSx SINE Alu -11 301 1 1701 210 81 79 chr9 365947 365976 -141905468 + MLT1F LTR MaLR 513 540 -2 2337 102 0 0 chr9 365987 366280 -141905164 - AluSg SINE Alu -16 294 2 835 218 107 55 chr9 366559 366825 -141904619 + MLT1F1 LTR MaLR 73 363 -204 198 0 0 0 chr9 368069 368091 -141903353 + (CA)n Simple_repeat Simple_repeat 2 23 0 513 285 77 27 chr9 368138 368359 -141903085 + MIR SINE MIR 29 260 -2 1945 143 0 11 chr9 368372 368710 -141902734 + AluSx SINE Alu 1 335 0 222 233 33 33 chr9 368858 368918 -141902526 + L2 LINE L2 3213 3272 0 25 65 0 0 chr9 369015 369061 -141902383 + AT_rich Low_complexity Low_complexity 1 46 0 195 69 0 0 chr9 369531 369560 -141901884 + (CA)n Simple_repeat Simple_repeat 1 29 0 1679 134 4 4 chr9 369709 369955 -141901489 + AluJb SINE Alu 39 284 -28 183 42 0 0 chr9 369960 369984 -141901460 + (CA)n Simple_repeat Simple_repeat 1 24 0 254 287 0 46 chr9 370208 370295 -141901149 - MIR SINE MIR -74 188 106 2872 166 23 32 chr9 370592 370996 -141900448 + L1MB7 LINE L1 5202 5600 -578 2420 74 0 3 chr9 370996 371293 -141900151 + AluY SINE Alu 1 296 -15 2872 166 23 32 chr9 371293 371525 -141899919 + L1MB7 LINE L1 5600 5833 -345 2720 157 48 0 chr9 371793 372270 -141899174 - MER34 LTR ERV1 -16 526 27 294 73 0 0 chr9 373701 373742 -141897702 + (CA)n Simple_repeat Simple_repeat 1 41 0 568 190 52 35 chr9 373831 373947 -141897497 - FLAM_C SINE Alu -15 118 1 1662 171 67 3 chr9 374123 374468 -141896976 + L1MB7 LINE L1 5818 6184 0 2075 111 20 10 chr9 374629 374926 -141896518 - AluSx SINE Alu -12 300 1 1604 162 33 46 chr9 374936 375239 -141896205 - AluJb SINE Alu -13 299 1 300 385 7 28 chr9 375358 375501 -141895943 - MIR3 SINE MIR -33 175 36 21 57 0 0 chr9 376863 376898 -141894546 + GC_rich Low_complexity Low_complexity 1 35 0 21 0 0 0 chr9 377185 377206 -141894238 + GC_rich Low_complexity Low_complexity 1 21 0 661 198 99 28 chr9 378105 378287 -141893157 - L1MB7 LINE L1 -2 6182 5988 237 65 0 0 chr9 378628 378659 -141892785 + (TG)n Simple_repeat Simple_repeat 1 31 0 1355 130 0 10 chr9 379267 379459 -141891985 + AluJo SINE Alu 97 286 -26 923 142 7 13 chr9 379491 379509 -141891935 - AluSx SINE Alu -158 154 137 1977 113 7 18 chr9 379509 379657 -141891787 - AluSq SINE Alu -32 281 136 2380 85 0 3 chr9 379657 379951 -141891493 - AluSc SINE Alu -11 298 6 1977 113 7 18 chr9 379951 380086 -141891358 - AluSq SINE Alu -177 136 1 923 142 7 13 chr9 380086 380222 -141891222 - AluSx SINE Alu -175 137 1 2451 77 6 0 chr9 380226 380537 -141890907 - AluSp SINE Alu 0 313 1 1567 267 68 34 chr9 380544 381135 -141890309 - L1ME3A LINE L1 -44 6126 5516 2194 96 7 0 chr9 381200 381491 -141889953 - AluSc SINE Alu -12 297 5 1740 157 0 51 chr9 381901 382213 -141889231 - AluJo SINE Alu -16 296 1 629 200 45 7 chr9 383498 383653 -141887791 + MIR SINE MIR 39 199 -63 1163 248 74 76 chr9 383912 384289 -141887155 - MLT1H1 LTR MaLR -4 622 207 999 231 54 30 chr9 384293 384331 -141887113 - MLT2D LTR ERVL 0 414 378 195 42 0 0 chr9 384331 384355 -141887089 + (TG)n Simple_repeat Simple_repeat 2 25 0 999 231 54 30 chr9 384355 384649 -141886795 - MLT2D LTR ERVL -36 378 74 557 229 83 13 chr9 384688 384845 -141886599 - MLT1H1 LTR MaLR -400 190 23 331 238 38 23 chr9 384869 385006 -141886438 - HAL1b LINE L1 -199 2308 785 1933 113 0 4 chr9 385869 386125 -141885319 + AluSx SINE Alu 36 290 -22 1188 111 0 0 chr9 386201 386381 -141885063 + (TCCC)n Simple_repeat Simple_repeat 1 180 0 1856 236 158 2 chr9 386563 387102 -141884342 - L1ME3A LINE L1 -159 6011 5389 2499 69 0 7 chr9 387162 387468 -141883976 + AluY SINE Alu 1 304 -7 261 0 0 0 chr9 389099 389128 -141882316 + (CA)n Simple_repeat Simple_repeat 2 30 0 2088 112 20 3 chr9 389208 389503 -141881941 - AluSg SINE Alu -10 300 1 2137 129 3 0 chr9 389836 390138 -141881306 - AluSx SINE Alu -9 303 1 2339 97 3 0 chr9 390990 391288 -141880156 - AluSp SINE Alu -12 301 3 2021 150 0 10 chr9 392156 392463 -141878981 + AluJb SINE Alu 1 304 -8 264 271 85 42 chr9 392483 392601 -141878843 - MLT1I LTR MaLR -232 177 55 2219 112 3 3 chr9 393663 393968 -141877476 - AluSx SINE Alu -7 305 1 23 0 0 0 chr9 394326 394349 -141877095 + AT_rich Low_complexity Low_complexity 1 23 0 1268 276 173 28 chr9 395098 396125 -141875319 + L2 LINE L2 2131 3307 -6 2040 143 3 0 chr9 396616 396917 -141874527 - AluSx SINE Alu -10 302 1 2316 96 0 26 chr9 397083 397395 -141874049 - AluSx SINE Alu -8 304 1 306 0 0 0 chr9 397451 397485 -141873959 + (TG)n Simple_repeat Simple_repeat 2 35 0 1721 115 4 27 chr9 397486 397747 -141873697 - AluSx SINE Alu -23 289 35 916 141 7 0 chr9 398531 398666 -141872778 + AluJo SINE Alu 1 136 -176 259 241 0 0 chr9 398832 398886 -141872558 + MER116 DNA Mariner 5 58 -22 708 251 137 38 chr9 398888 399310 -141872134 - HAL1 LINE L1 -167 2340 1877 1083 233 149 73 chr9 399313 399383 -141872061 - HAL1 LINE L1 -719 1788 1725 1874 151 3 0 chr9 399383 399701 -141871743 - AluSq SINE Alu 0 319 1 1083 233 149 73 chr9 399701 399967 -141871477 - HAL1 LINE L1 -782 1725 1481 2119 73 59 21 chr9 399967 400256 -141871188 + AluY SINE Alu 1 300 -11 1083 233 149 73 chr9 400256 400560 -141870884 - HAL1 LINE L1 -1026 1481 1097 2307 89 3 22 chr9 400570 400883 -141870561 - AluSx SINE Alu 0 312 6 1929 157 7 0 chr9 400906 401199 -141870245 - AluJb SINE Alu -17 295 1 402 100 0 0 chr9 401335 401395 -141870049 + (CA)n Simple_repeat Simple_repeat 2 61 0 434 83 0 4 chr9 401395 401599 -141869845 - AluSc SINE Alu -17 292 1 1152 309 100 17 chr9 401614 402203 -141869241 - L1MC4a LINE L1 -1847 5961 5324 21 0 0 0 chr9 402400 402421 -141869023 + AT_rich Low_complexity Low_complexity 1 21 0 273 241 114 32 chr9 402421 402579 -141868865 - L1P LINE L1 -1090 5056 4886 1450 169 126 0 chr9 402807 403068 -141868376 + AluJb SINE Alu 1 294 -18 1690 182 31 3 chr9 403257 403548 -141867896 + AluJo SINE Alu 1 299 -13 185 0 40 0 chr9 403945 403970 -141867474 + (TG)n Simple_repeat Simple_repeat 1 26 0 962 86 0 0 chr9 404332 404460 -141866984 - AluSp/q SINE Alu -3 310 183 198 0 0 0 chr9 404465 404487 -141866957 + (T)n Simple_repeat Simple_repeat 1 22 0 1096 151 13 23 chr9 404487 404714 -141866730 - L1MB3 LINE L1 -36 6147 5917 300 297 97 0 chr9 405418 405563 -141865881 + MIR SINE MIR 72 230 -32 238 206 389 0 chr9 407524 407655 -141863789 - MIR SINE MIR -3 259 78 1010 235 12 20 chr9 407842 408097 -141863347 - MLT1D-int LTR MaLR -1118 253 1 1970 179 37 103 chr9 408099 408160 -141863284 - MLT1D LTR MaLR -4 501 438 1996 124 7 14 chr9 408160 408450 -141862994 + AluSx SINE Alu 5 292 -20 1970 179 37 103 chr9 408450 408924 -141862520 - MLT1D LTR MaLR -67 438 1 929 126 161 60 chr9 409756 409955 -141861489 + MER20 DNA MER1_type 1 219 0 219 274 36 48 chr9 410239 410323 -141861121 + MIR SINE MIR 96 178 -84 214 274 65 0 chr9 410830 410892 -141860552 + MIR SINE MIR 117 182 -80 2148 131 7 0 chr9 410975 411281 -141860163 - AluSx SINE Alu -4 308 1 7439 171 100 16 chr9 411313 411594 -141859850 - L1 LINE L1 -1446 4700 4444 1883 164 17 3 chr9 411594 411887 -141859557 - AluJo SINE Alu -15 297 1 7439 171 100 16 chr9 411887 413217 -141858227 - L1 LINE L1 -1702 4444 2954 2215 201 21 70 chr9 413236 413540 -141857904 + L1MA9 LINE L1 4695 5012 -1172 240 108 0 0 chr9 413540 413577 -141857867 + tRNA-Cys-TGC tRNA tRNA 1 37 -38 2215 201 21 70 chr9 413577 413908 -141857536 + L1MA9 LINE L1 5012 5322 -862 2719 10 0 0 chr9 413908 414201 -141857243 + AluY SINE Alu 1 293 -18 2215 201 21 70 chr9 414201 414316 -141857128 + L1MA9 LINE L1 5322 5441 -743 922 113 8 15 chr9 414317 414450 -141856994 + AluSq/x SINE Alu 1 132 -180 3962 166 91 17 chr9 414450 415268 -141856176 + L1MA9 LINE L1 5432 6309 -3 2298 108 0 10 chr9 415374 415680 -141855764 + AluSq SINE Alu 1 303 -10 257 27 54 0 chr9 416099 416136 -141855308 + (TTTTA)n Simple_repeat Simple_repeat 2 40 0 1809 151 18 7 chr9 416139 416423 -141855021 - AluJo SINE Alu -25 287 1 235 333 86 37 chr9 416922 417084 -141854360 - L2 LINE L2 -491 2823 2654 416 282 189 18 chr9 417330 417663 -141853781 - L2 LINE L2 -881 2433 2044 2281 84 3 34 chr9 417825 418147 -141853297 - AluSx SINE Alu 0 312 1 392 352 101 6 chr9 418149 418308 -141853136 - MER91A DNA MER1_type -19 177 4 1103 203 28 24 chr9 418324 418536 -141852908 + MER20 DNA MER1_type 7 219 0 24 67 0 0 chr9 420816 420861 -141850583 + AT_rich Low_complexity Low_complexity 1 45 0 889 137 0 30 chr9 420897 421028 -141850416 + AluJo SINE Alu 1 127 -185 901 198 19 0 chr9 422564 422721 -141848723 + AluJo SINE Alu 137 296 -6 524 318 71 82 chr9 423711 423866 -141847578 - L2 LINE L2 -35 3237 3082 1932 145 13 26 chr9 423866 424169 -141847275 + AluJo SINE Alu 1 299 -13 524 318 71 82 chr9 424169 424353 -141847091 - L2 LINE L2 -190 3082 2902 250 303 15 0 chr9 424355 424421 -141847023 - L2 LINE L2 -626 2688 2622 2038 116 3 14 chr9 424963 425256 -141846188 + AluJo SINE Alu 1 290 -22 310 288 169 6 chr9 425425 425585 -141845859 - MIR SINE MIR -17 245 60 22 0 0 0 chr9 425981 426003 -141845441 + AT_rich Low_complexity Low_complexity 1 22 0 717 193 14 14 chr9 426004 426149 -141845295 - MER5A DNA MER1_type 0 189 45 2169 155 63 86 chr9 426153 426549 -141844895 - MLT2B2 LTR ERVL -10 505 122 3501 109 40 0 chr9 426549 427043 -141844401 - MER75 DNA T2_type 0 514 1 2169 155 63 86 chr9 427043 427157 -141844287 - MLT2B2 LTR ERVL -393 122 7 298 180 0 0 chr9 427163 427213 -141844231 - MER5A DNA MER1_type -138 51 2 919 188 6 6 chr9 429139 429309 -141842135 + AluJb SINE Alu 139 308 -4 384 234 53 66 chr9 429321 429547 -141841897 + L1MC5 LINE L1 7713 7935 -26 1523 169 99 0 chr9 429848 430121 -141841323 + AluJb SINE Alu 1 300 -12 2396 208 25 30 chr9 430401 430925 -141840519 + MER82 DNA MER2_type 11 531 -122 750 100 20 0 chr9 430926 431026 -141840418 + U6 snRNA snRNA 1 102 -5 519 217 130 0 chr9 431045 431160 -141840284 + MER82 DNA MER2_type 524 653 0 363 346 65 34 chr9 432197 432460 -141838984 + L3 LINE CR1 278 548 -1029 522 310 207 32 chr9 432813 433252 -141838192 + L3 LINE CR1 687 1202 -375 651 247 82 58 chr9 433388 433716 -141837728 - L1ME4a LINE L1 -216 5905 5570 221 298 60 0 chr9 433746 433830 -141837614 + L3 LINE CR1 1462 1550 -27 2925 10 0 0 chr9 434138 434452 -141836992 - AluYb8 SINE Alu -4 314 1 297 333 94 19 chr9 434664 434823 -141836621 + MIR SINE MIR 90 260 -2 231 289 144 0 chr9 434886 434983 -141836461 + L2 LINE L2 3198 3308 -5 2430 62 0 10 chr9 436155 436462 -141834982 - AluY SINE Alu -7 304 1 235 280 21 32 chr9 436496 436589 -141834855 - Charlie7 DNA MER1_type -11 2601 2510 3161 162 84 71 chr9 437498 437968 -141833476 - LTR8A LTR ERV1 0 727 243 5988 113 25 1 chr9 437968 439416 -141832028 - L1PA13 LINE L1 -11 6152 4681 3161 162 84 71 chr9 439416 439663 -141831781 - LTR8A LTR ERV1 -484 243 1 249 218 128 0 chr9 440114 440192 -141831252 - MIR SINE MIR -91 171 84 304 194 0 5 chr9 440547 440618 -141830826 - AluS SINE Alu -20 280 232 1508 175 46 15 chr9 440619 440882 -141830562 - AluJo SINE Alu -41 271 1 2756 98 83 2 chr9 441366 441762 -141829682 + MSTC LTR MaLR 1 428 0 392 278 25 102 chr9 442973 443218 -141828226 - L1ME LINE L1 -384 5737 5512 28 0 0 0 chr9 443660 443688 -141827756 + AT_rich Low_complexity Low_complexity 1 28 0 1688 169 13 23 chr9 444251 444425 -141827019 - AluJo SINE Alu -8 304 133 1869 80 0 8 chr9 444425 444664 -141826780 + AluY SINE Alu 57 293 -18 1688 169 13 23 chr9 444664 444796 -141826648 - AluJo SINE Alu -179 133 1 2413 63 0 3 chr9 445363 445670 -141825774 - AluY SINE Alu 0 306 1 2228 108 10 3 chr9 446675 446980 -141824464 + AluSx SINE Alu 1 307 -5 183 237 26 92 chr9 447367 447443 -141824001 - MIR SINE MIR -136 126 56 1891 154 3 14 chr9 447486 447779 -141823665 + AluJb SINE Alu 1 290 -22 2026 150 0 3 chr9 447840 448134 -141823310 + AluSx SINE Alu 1 293 -19 866 213 38 16 chr9 448148 448331 -141823113 + MER5A DNA MER1_type 2 188 -1 5007 65 194 27 chr9 448964 449672 -141821772 - LTR12 LTR ERV1 0 826 1 1055 208 33 0 chr9 449724 449907 -141821537 + MER5A DNA MER1_type 1 189 0 207 0 0 0 chr9 450430 450453 -141820991 + (TG)n Simple_repeat Simple_repeat 2 24 0 4538 119 134 31 chr9 452066 453430 -141818014 - pTR5 LTR ERV1 0 2606 1524 31 58 0 0 chr9 455772 455824 -141815620 + AT_rich Low_complexity Low_complexity 1 52 0 22 70 0 0 chr9 455986 456029 -141815415 + AT_rich Low_complexity Low_complexity 1 43 0 21 0 0 0 chr9 456543 456564 -141814880 + AT_rich Low_complexity Low_complexity 1 21 0 284 312 178 36 chr9 456977 457253 -141814191 + L2 LINE L2 1771 2085 -1229 250 288 182 25 chr9 458140 458338 -141813106 - MIR SINE MIR -3 259 31 530 295 106 10 chr9 459753 459884 -141811560 - MIR SINE MIR -10 252 92 2271 125 0 0 chr9 459884 460196 -141811248 + AluSx SINE Alu 1 312 0 530 295 106 10 chr9 460196 460271 -141811173 - MIR SINE MIR -170 92 26 894 241 63 69 chr9 460322 460670 -141810774 - L1ME4a LINE L1 -286 5835 5490 300 213 516 7 chr9 460831 460986 -141810458 + MIR SINE MIR 21 254 -8 485 257 75 70 chr9 461211 461452 -141809992 - MIR SINE MIR -3 259 18 280 138 92 62 chr9 462407 462472 -141808972 + MIR3 SINE MIR 125 191 -17 349 222 178 10 chr9 462995 463251 -141808193 - L1ME LINE L1 -527 5594 5281 21 71 0 0 chr9 463258 463300 -141808144 + AT_rich Low_complexity Low_complexity 1 42 0 22 35 0 0 chr9 463343 463372 -141808072 + AT_rich Low_complexity Low_complexity 1 29 0 370 327 96 6 chr9 463441 463712 -141807732 + L2 LINE L2 2653 2963 -309 319 310 14 41 chr9 463741 463770 -141807674 + L2 LINE L2 3121 3149 -164 1964 125 31 7 chr9 463770 464059 -141807385 - AluSq SINE Alu -17 296 1 319 310 14 41 chr9 464059 464174 -141807270 + L2 LINE L2 3149 3261 -52 2618 145 88 47 chr9 464183 464672 -141806772 + LTR22 LTR ERVK 1 509 0 310 294 34 62 chr9 464730 464907 -141806537 - L1ME4a LINE L1 -1088 5058 4887 30 0 0 0 chr9 466842 466872 -141804572 + AT_rich Low_complexity Low_complexity 1 30 0 761 188 0 0 chr9 467233 467350 -141804094 + FLAM_A SINE Alu 1 117 -16 2003 159 13 0 chr9 467614 467922 -141803522 - AluJo SINE Alu 0 312 1 2496 131 6 0 chr9 467999 468358 -141803086 - MER46B DNA MER2_type 0 236 1 4107 177 70 11 chr9 468831 469739 -141801705 - L1MB5 LINE L1 -1 6173 5215 2267 108 3 13 chr9 469750 470065 -141801379 - AluSx SINE Alu 0 312 1 2777 212 30 14 chr9 470067 470721 -141800723 - L1MB5 LINE L1 -1092 5054 4412 2251 116 6 3 chr9 470721 471032 -141800412 - AluSx SINE Alu 0 312 1 2777 212 30 14 chr9 471032 471121 -141800323 - L1MB5 LINE L1 -1734 4412 4336 2266 112 3 0 chr9 471121 471417 -141800027 - AluSp SINE Alu -15 298 2 2777 212 30 14 chr9 471417 471439 -141800005 - L1MB5 LINE L1 -1810 4336 4316 257 315 100 30 chr9 471665 471719 -141799725 - L1MC/D LINE L1 -1981 5827 5778 1098 219 8 60 chr9 471719 471970 -141799474 - MER8 DNA MER2_type -1 238 1 257 315 100 30 chr9 471970 472115 -141799329 - L1MC/D LINE L1 -2030 5778 5614 1991 157 57 21 chr9 472130 472513 -141798931 - L1MB2 LINE L1 0 6171 5775 1574 213 74 51 chr9 473203 473714 -141797730 - L1MD3 LINE L1 0 7995 7473 * 1668 202 18 9 chr9 473710 474037 -141797407 - L1MD3 LINE L1 -958 7037 6708 2187 103 0 0 chr9 474349 474658 -141796786 - AluSc SINE Alu 0 309 1 2237 107 3 16 chr9 475773 476083 -141795361 + AluSx SINE Alu 1 306 -6 217 250 0 0 chr9 476325 476373 -141795071 - MIR SINE MIR -2 260 213 1875 146 32 106 chr9 476375 476650 -141794794 + THE1C LTR MaLR 1 238 -137 2009 127 14 0 chr9 476650 476934 -141794510 + AluSx SINE Alu 1 288 -24 1875 146 32 106 chr9 476934 477063 -141794381 + THE1C LTR MaLR 238 375 0 2263 107 3 0 chr9 477123 477421 -141794023 + AluSg SINE Alu 2 300 -10 242 349 64 41 chr9 477494 477666 -141793778 - L2 LINE L2 -183 3089 2914 395 106 15 0 chr9 478243 478309 -141793135 + (CA)n Simple_repeat Simple_repeat 2 68 0 39 38 0 0 chr9 478309 478362 -141793082 + AT_rich Low_complexity Low_complexity 1 53 0 2214 108 3 0 chr9 478379 478667 -141792777 + AluSq SINE Alu 5 293 -20 236 186 17 0 chr9 478696 478755 -141792689 + (TA)n Simple_repeat Simple_repeat 2 61 0 405 269 56 0 chr9 478893 479001 -141792443 - L2 LINE L2 -1 3312 3199 2184 124 3 0 chr9 479309 479608 -141791836 + AluSx SINE Alu 6 305 -7 2691 3 0 0 chr9 480113 480421 -141791023 - AluYb8 SINE Alu 0 324 17 2129 123 0 10 chr9 481446 481755 -141789689 + AluSx SINE Alu 1 306 -6 2211 97 0 0 chr9 483828 484118 -141787326 - AluY SINE Alu -21 290 1 1443 89 139 0 chr9 485467 485669 -141785775 - MER30 DNA MER1_type 0 230 1 473 279 34 34 chr9 486649 486828 -141784616 - MER20B DNA MER1_type -604 179 1 1621 144 66 4 chr9 487064 487335 -141784109 - AluJo SINE Alu -23 289 2 1181 262 92 26 chr9 488729 489111 -141782333 - MLT1I LTR MaLR -2 407 1 2063 138 3 0 chr9 490310 490608 -141780836 - AluSx SINE Alu -13 299 1 2093 117 17 3 chr9 491955 492246 -141779198 + AluSx SINE Alu 1 295 -17 1941 112 0 28 chr9 492506 492793 -141778651 - AluSg SINE Alu -19 291 13 28 0 0 0 chr9 492795 492823 -141778621 + AT_rich Low_complexity Low_complexity 1 28 0 232 281 89 34 chr9 494383 494529 -141776915 - L2 LINE L2 -21 3292 3139 4666 177 73 24 chr9 494567 494722 -141776722 + L1MA9 LINE L1 4861 5007 -1305 2319 87 3 3 chr9 494722 495020 -141776424 + AluSg SINE Alu 1 298 -12 4666 177 73 24 chr9 495020 495409 -141776035 + L1MA9 LINE L1 5007 5375 -937 1979 145 0 46 chr9 495409 495734 -141775710 + AluJb SINE Alu 2 311 -1 4666 177 73 24 chr9 495734 496578 -141774866 + L1MA9 LINE L1 5375 6312 0 2221 106 17 0 chr9 496622 496915 -141774529 + AluSx SINE Alu 1 298 -14 236 314 81 5 chr9 497026 497131 -141774313 + MIR SINE MIR 52 163 -45 1742 121 133 0 chr9 498284 498548 -141772896 + AluSx SINE Alu 3 301 -11 197 293 53 0 chr9 499230 499305 -141772139 - MIR3 SINE MIR -1 207 129 351 380 41 36 chr9 500609 500830 -141770614 - L1MEd LINE L1 -5506 613 392 2123 114 13 3 chr9 500897 501195 -141770249 + AluSq SINE Alu 1 301 -12 263 293 27 0 chr9 501208 501283 -141770161 + HsTC2 DNA Tc2 1822 1898 0 266 200 0 0 chr9 501953 501998 -141769446 - L2 LINE L2 -18 3254 3210 1886 154 3 3 chr9 502066 502365 -141769079 + AluJb SINE Alu 1 299 -13 2087 70 19 4 chr9 502374 502645 -141768799 + AluY SINE Alu 1 275 -36 1728 86 0 5 chr9 502720 502940 -141768504 + AluSq SINE Alu 1 219 -94 871 161 0 0 chr9 502940 503077 -141768367 + AluSg/x SINE Alu 166 302 -8 189 246 53 0 chr9 503450 503507 -141767937 - L3b LINE CR1 -140 1443 1384 202 328 103 83 chr9 503841 504189 -141767255 + L2 LINE L2 2898 3252 -20 189 0 0 0 chr9 504782 504803 -141766641 + (TTTTG)n Simple_repeat Simple_repeat 2 22 0 1989 114 0 14 chr9 504805 505094 -141766350 - AluSx SINE Alu -27 285 1 2262 57 3 7 chr9 505276 505584 -141765860 + AluY SINE Alu 1 307 0 1724 177 7 0 chr9 505768 506051 -141765393 - AluJo SINE Alu -27 285 1 2166 184 71 113 chr9 506170 506919 -141764525 - LTR8A LTR ERV1 -24 685 1 432 277 44 22 chr9 506920 507057 -141764387 - MLT1L LTR MaLR -128 487 348 340 289 44 0 chr9 507089 507203 -141764241 - MLT1L LTR MaLR -339 276 158 1977 115 83 0 chr9 507787 508075 -141763369 - AluSx SINE Alu 0 312 1 432 275 67 13 chr9 508177 508326 -141763118 - MER5B DNA MER1_type -16 162 6 2186 108 10 3 chr9 508686 508991 -141762453 + AluSg SINE Alu 1 307 -3 879 231 16 11 chr9 509558 509740 -141761704 - MER5A DNA MER1_type -6 183 1 181 125 25 0 chr9 509897 509937 -141761507 + MER5C DNA MER1_type 234 274 -50 480 292 26 13 chr9 509986 510140 -141761304 - MLT1L LTR MaLR -113 502 347 723 194 52 0 chr9 510279 510413 -141761031 - MSTC LTR MaLR -2 426 286 1985 139 30 0 chr9 511416 511717 -141759727 - AluSx SINE Alu -2 310 1 1866 189 36 25 chr9 511793 512153 -141759291 - MLT1A1 LTR MaLR -1 364 1 1070 133 36 0 chr9 512337 512503 -141758941 - AluSg/x SINE Alu -7 305 134 2070 129 3 0 chr9 512503 512797 -141758647 - AluSx SINE Alu -17 295 1 2291 95 0 0 chr9 512800 513096 -141758348 - AluY SINE Alu -15 296 1 1022 157 8 81 chr9 513900 514148 -141757296 - L1MB8 LINE L1 0 6178 5949 752 163 39 16 chr9 515650 515779 -141755665 - FLAM_C SINE Alu 0 133 2 2228 107 0 10 chr9 515794 516103 -141755341 - AluSx SINE Alu -6 306 1 2824 103 56 15 chr9 516455 516863 -141754581 - MSTA LTR MaLR -3 425 1 2077 127 3 13 chr9 516942 517250 -141754194 + AluSx SINE Alu 4 308 -4 1903 168 3 0 chr9 517265 517562 -141753882 + AluSx SINE Alu 7 304 -8 26 50 0 0 chr9 517626 517666 -141753778 + AT_rich Low_complexity Low_complexity 1 40 0 1284 95 0 18 chr9 517700 517869 -141753575 + AluSq SINE Alu 1 166 -147 504 121 0 0 chr9 517873 517939 -141753505 + AluS SINE Alu 221 286 -24 25 53 0 18 chr9 518287 518312 -141753132 + AT_rich Low_complexity Low_complexity 1 25 -31 821 143 0 53 chr9 518312 518445 -141752999 + FLAM_C SINE Alu 2 127 -6 25 53 0 18 chr9 518445 518476 -141752968 + AT_rich Low_complexity Low_complexity 25 56 0 2018 114 9 44 chr9 518775 519092 -141752352 - AluSx SINE Alu 0 312 7 201 154 0 0 chr9 519317 519356 -141752088 + (TTTA)n Simple_repeat Simple_repeat 2 40 0 2340 93 0 10 chr9 520100 520402 -141751042 - AluSc SINE Alu -10 299 1 189 359 0 0 chr9 520675 520728 -141750716 - L2 LINE L2 -87 3185 3133 235 287 109 20 chr9 520788 520889 -141750555 + MIR SINE MIR 107 216 -46 405 206 103 48 chr9 521357 521483 -141749961 - MER94 DNA DNA 0 134 2 339 270 20 10 chr9 522553 522653 -141748791 - MER5A DNA MER1_type -80 109 9 233 298 0 48 chr9 523109 523231 -141748213 + MIR SINE MIR 63 178 -30 271 284 56 128 chr9 524125 524339 -141747105 + L1ME4a LINE L1 5529 5714 -2094 2167 120 0 7 chr9 524339 524638 -141746806 + AluSq SINE Alu 1 297 -16 271 284 56 128 chr9 524638 524743 -141746701 + L1ME4a LINE L1 5714 5825 -1983 256 181 133 133 chr9 524805 524910 -141746534 + L1ME4a LINE L1 5945 6049 -72 355 274 128 34 chr9 525252 525431 -141746013 - MIR3 SINE MIR -9 199 4 587 218 68 0 chr9 526248 526381 -141745063 - MER5A DNA MER1_type -47 142 1 317 273 24 24 chr9 526411 526514 -141744930 + MER5A DNA MER1_type 3 116 -73 312 70 0 0 chr9 526915 526958 -141744486 + (GA)n Simple_repeat Simple_repeat 1 43 0 342 158 18 0 chr9 526991 527048 -141744396 - MER5A DNA MER1_type -131 58 1 472 250 57 10 chr9 527056 527182 -141744262 - MER5B DNA MER1_type 0 178 56 2257 109 0 3 chr9 527188 527492 -141743952 + AluSq SINE Alu 1 303 -10 477 244 179 19 chr9 527585 527741 -141743703 - MER5A DNA MER1_type 0 189 9 3351 176 48 42 chr9 528981 529726 -141741718 - L1MB2 LINE L1 0 6171 5422 726 161 154 0 chr9 530007 530137 -141741307 - FAM SINE Alu -34 151 2 225 293 67 60 chr9 530360 530510 -141740934 + L2 LINE L2 2717 2867 -447 977 213 65 54 chr9 530563 530934 -141740510 - L1MB2 LINE L1 -967 5179 4805 577 291 56 67 chr9 530936 531293 -141740151 + L2 LINE L2 2961 3313 0 909 178 16 27 chr9 531424 531609 -141739835 - MER5A DNA MER1_type -1 188 6 1448 185 240 9 chr9 531609 531955 -141739489 - MSTB LTR MaLR 0 426 1 7108 66 0 0 chr9 533245 534126 -141737318 - L1PA5 LINE L1 -20 6134 5254 4755 82 16 0 chr9 534134 534766 -141736678 + L1P LINE L1 4347 4988 -1158 2404 84 0 0 chr9 534766 535062 -141736382 - AluSx SINE Alu -16 296 1 1057 113 33 0 chr9 536063 536214 -141735230 + THE1C LTR MaLR 4 159 -216 1996 140 26 0 chr9 536215 536557 -141734887 - L1MA4 LINE L1 -181 6301 5951 657 125 0 21 chr9 536560 536656 -141734788 - AluJo SINE Alu -177 135 42 12963 177 41 21 chr9 536656 537998 -141733446 - L1MA4 LINE L1 -521 5961 4647 1568 164 40 43 chr9 537998 538297 -141733147 + AluJo SINE Alu 1 298 -14 12963 177 41 21 chr9 538297 539835 -141731609 - L1MA4 LINE L1 -1835 4647 3011 2145 122 34 0 chr9 539835 540131 -141731313 - AluSx SINE Alu -6 306 1 12963 177 41 21 chr9 540131 540500 -141730944 - L1MA4 LINE L1 -3471 3011 2651 583 84 122 0 chr9 540491 540598 -141730846 - L1MA4 LINE L1 -4203 1125 1006 * 7096 180 31 33 chr9 540605 540831 -141730613 - L1M1 LINE L1 -4031 2297 2072 1913 164 105 3 chr9 540831 541136 -141730308 - MER1B DNA MER1_type -1 336 1 7096 180 31 33 chr9 541136 543208 -141728236 - L1M1 LINE L1 -4256 2072 27 1938 72 110 0 chr9 543464 543728 -141727716 + AluY SINE Alu 1 293 -18 1763 79 0 0 chr9 543849 544063 -141727381 + AluSg/x SINE Alu 84 297 -15 240 277 88 22 chr9 544094 544231 -141727213 + MARNA DNA Mariner 424 569 -17 590 297 52 9 chr9 544237 544449 -141726995 + MIR SINE MIR 25 245 -17 2161 125 3 6 chr9 545298 545610 -141725834 - AluSx SINE Alu -1 311 1 2122 114 7 3 chr9 546806 547105 -141724339 - AluSx SINE Alu -12 300 1 25 31 0 0 chr9 547105 547137 -141724307 + AT_rich Low_complexity Low_complexity 1 32 0 423 238 157 22 chr9 547139 547362 -141724082 - L1ME4a LINE L1 -65 6056 5804 4152 138 26 10 chr9 547766 548391 -141723053 - MER41B LTR ERV1 0 635 1 279 318 45 11 chr9 549916 550004 -141721440 + MIR SINE MIR 20 110 -98 364 253 80 49 chr9 550361 550523 -141720921 - MIR SINE MIR -1 261 95 1947 136 11 0 chr9 550555 550841 -141720603 + AluSx SINE Alu 9 297 -15 237 200 31 31 chr9 551380 551445 -141719999 + L1MC4 LINE L1 6636 6700 -1342 225 236 0 18 chr9 551448 551503 -141719941 + (TA)n Simple_repeat Simple_repeat 2 55 0 1978 124 32 3 chr9 551524 551807 -141719637 - AluSx SINE Alu -21 291 1 491 181 86 9 chr9 552662 552767 -141718677 - L2 LINE L2 -14 3299 3187 1828 150 10 26 chr9 553032 553338 -141718106 + AluJo SINE Alu 1 301 -11 219 241 17 121 chr9 553629 553745 -141717699 + MIR SINE MIR 128 231 -31 2263 110 0 0 chr9 554098 554398 -141717046 + AluSx SINE Alu 1 300 -12 508 287 66 26 chr9 554568 554840 -141716604 - L1ME4a LINE L1 -246 5875 5593 186 43 0 0 chr9 559122 559145 -141712299 + (TTTTC)n Simple_repeat Simple_repeat 2 24 0 249 263 61 30 chr9 560059 560158 -141711286 - L2 LINE L2 0 3272 3171 2159 111 24 0 chr9 560425 560714 -141710730 + AluSx SINE Alu 2 297 -15 192 77 0 0 chr9 562064 562090 -141709354 + (TTG)n Simple_repeat Simple_repeat 2 27 0 2248 96 0 56 chr9 562106 562429 -141709015 + AluSx SINE Alu 1 305 -7 346 211 21 21 chr9 562543 562638 -141708806 + MIR SINE MIR 127 221 -41 896 155 0 14 chr9 563519 563661 -141707783 - FLAM_C SINE Alu -3 140 1 1818 163 3 17 chr9 563712 564013 -141707431 - AluJb SINE Alu -11 301 5 477 214 57 34 chr9 564616 564763 -141706681 - L1ME1 LINE L1 0 6178 6021 1614 176 54 7 chr9 564833 565111 -141706333 + AluJo SINE Alu 1 291 -21 369 192 0 0 chr9 567908 567981 -141703463 - MIR SINE MIR -178 84 12 2500 38 28 0 chr9 568111 568400 -141703044 + AluY SINE Alu 1 297 -14 241 240 173 58 chr9 569073 569177 -141702267 - L1MC4 LINE L1 -2 8040 7925 300 27 0 0 chr9 569177 569214 -141702230 + (TG)n Simple_repeat Simple_repeat 2 38 0 700 201 178 169 chr9 569222 569895 -141701549 - L1MC4 LINE L1 -403 7639 6961 341 243 0 0 chr9 570950 571024 -141700420 + L2 LINE L2 2684 2757 -557 393 254 133 23 chr9 571298 571471 -141699973 + L2 LINE L2 3122 3313 0 1408 149 0 5 chr9 571882 572090 -141699354 + AluJo SINE Alu 84 290 -22 1958 109 47 0 chr9 573225 573500 -141697944 - AluSp SINE Alu -21 292 5 974 167 39 39 chr9 573577 573781 -141697663 - MER20 DNA MER1_type 0 219 16 426 234 53 0 chr9 574485 574579 -141696865 + L2 LINE L2 3186 3284 -29 203 147 0 0 chr9 574596 574630 -141696814 + (GA)n Simple_repeat Simple_repeat 2 35 0 2169 114 0 13 chr9 575094 575392 -141696052 - AluSx SINE Alu -18 294 1 2275 102 0 29 chr9 575800 576114 -141695330 - AluSx SINE Alu -7 305 1 899 285 32 21 chr9 576258 576542 -141694902 - MLT1J LTR MaLR -1 510 224 1870 157 0 38 chr9 576799 577118 -141694326 + AluJo SINE Alu 1 307 -5 23 33 0 0 chr9 577137 577167 -141694277 + AT_rich Low_complexity Low_complexity 1 30 0 2006 94 0 0 chr9 577304 577559 -141693885 + AluSx SINE Alu 1 255 -57 2104 106 0 11 chr9 577715 577997 -141693447 - AluSq SINE Alu -30 283 5 22 0 0 0 chr9 578000 578022 -141693422 + AT_rich Low_complexity Low_complexity 1 22 0 280 221 91 65 chr9 578569 578723 -141692721 + L1ME4a LINE L1 5962 6119 -2 2225 92 10 16 chr9 581711 582016 -141689428 - AluSq SINE Alu -10 303 1 960 211 18 44 chr9 582095 582323 -141689121 + L1PA16 LINE L1 5942 6163 -3 214 275 38 12 chr9 582352 582432 -141689012 - MIR SINE MIR -89 173 92 2281 110 10 3 chr9 582436 582746 -141688698 + AluSx SINE Alu 1 312 0 791 169 0 8 chr9 586058 586182 -141685262 + FLAM_A SINE Alu 1 123 -10 411 312 69 13 chr9 586199 586430 -141685014 - L2 LINE L2 -18 3295 3052 2062 135 14 0 chr9 586462 586758 -141684686 - AluSx SINE Alu -12 300 1 217 256 136 5 chr9 588285 588430 -141683014 + MIR SINE MIR 28 256 -6 1059 163 25 64 chr9 588879 589082 -141682362 + AluJo SINE Alu 87 281 -31 1836 163 17 3 chr9 589110 589411 -141682033 + AluJb SINE Alu 7 311 -1 23 33 0 0 chr9 589711 589741 -141681703 + AT_rich Low_complexity Low_complexity 1 30 0 180 327 39 65 chr9 590340 590399 -141681045 + MIR3 SINE MIR 30 89 -119 1977 161 10 6 chr9 590399 590710 -141680734 - AluJb SINE Alu 0 312 1 180 327 39 65 chr9 590710 590803 -141680641 + MIR3 SINE MIR 89 178 -30 2250 99 0 29 chr9 591054 591367 -141680077 - AluSg SINE Alu -6 304 1 23 0 0 0 chr9 591691 591714 -141679730 + AT_rich Low_complexity Low_complexity 1 23 0 620 125 0 118 chr9 591844 591980 -141679464 - FRAM SINE Alu -12 164 45 1446 193 7 43 chr9 592451 592756 -141678688 - AluJo SINE Alu -18 294 1 628 190 22 51 chr9 592758 592895 -141678549 - AluJo/FLAM SINE Alu -169 133 1 335 134 15 30 chr9 593102 593169 -141678275 - MER5B DNA MER1_type 0 178 113 3045 166 75 46 chr9 593169 594102 -141677342 + LTR8-int LTR ERV1 5043 6257 -6 1033 186 142 9 chr9 594112 594338 -141677106 + LTR8 LTR ERV1 1 256 -435 23 0 0 0 chr9 594353 594376 -141677068 + AT_rich Low_complexity Low_complexity 1 23 0 297 125 0 0 chr9 594414 594470 -141676974 + (TC)n Simple_repeat Simple_repeat 1 56 0 206 155 14 127 chr9 594494 594565 -141676879 + MER5B DNA MER1_type 116 178 0 602 232 49 32 chr9 595386 595571 -141675873 + L1ME2 LINE L1 5943 6130 -34 804 151 8 16 chr9 595600 595726 -141675718 + FRAM SINE Alu 21 145 -31 682 223 82 62 chr9 595800 595915 -141675529 + L1MC5 LINE L1 7489 7600 -361 1558 180 10 37 chr9 595915 596210 -141675234 + AluJb SINE Alu 5 291 -21 682 223 82 62 chr9 596210 596497 -141674947 + L1MC5 LINE L1 7600 7899 -62 2238 95 0 14 chr9 596616 596910 -141674534 + AluSx SINE Alu 1 290 -22 211 230 148 82 chr9 597261 597370 -141674074 + MIR3 SINE MIR 37 158 -50 1805 106 0 16 chr9 597370 597616 -141673828 + AluSx SINE Alu 60 301 -11 211 230 148 82 chr9 597616 597641 -141673803 + MIR3 SINE MIR 158 180 -28 257 319 35 9 chr9 597737 597850 -141673594 + MER5A DNA MER1_type 50 165 -24 2125 119 3 0 chr9 598457 598750 -141672694 + AluSx SINE Alu 1 294 -18 1977 129 3 23 chr9 598778 599080 -141672364 + AluSq SINE Alu 1 296 -17 2190 100 21 3 chr9 599423 599714 -141671730 - AluSx SINE Alu -14 298 3 429 20 0 0 chr9 599781 599831 -141671613 + (TG)n Simple_repeat Simple_repeat 1 50 0 249 284 0 0 chr9 599848 599922 -141671522 - L1ME4a LINE L1 -205 5916 5843 5245 115 29 62 chr9 599949 600282 -141671162 + MER4D LTR ERV1 1 344 -559 2117 107 9 28 chr9 600282 600599 -141670845 - AluSx SINE Alu -1 311 1 5245 115 29 62 chr9 600599 601199 -141670245 + MER4D LTR ERV1 344 903 0 2180 112 0 3 chr9 602510 602797 -141668647 + AluSx SINE Alu 1 286 -26 1221 183 100 0 chr9 605642 605871 -141665573 + AluJo SINE Alu 40 291 -21 26 0 0 0 chr9 605896 605922 -141665522 + AT_rich Low_complexity Low_complexity 1 26 0 2000 135 26 13 chr9 605931 606234 -141665210 + AluJb SINE Alu 1 307 -5 22 0 0 0 chr9 606459 606481 -141664963 + AT_rich Low_complexity Low_complexity 1 22 0 2227 101 0 0 chr9 606490 606776 -141664668 + AluSx SINE Alu 7 292 -20 1010 163 180 85 chr9 607671 607812 -141663632 + MER2 DNA MER2_type 36 162 -183 1943 145 0 3 chr9 607812 608102 -141663342 + AluSx SINE Alu 1 289 -23 1976 74 0 8 chr9 608102 608359 -141663085 - AluY SINE Alu -55 256 1 1010 163 180 85 chr9 608359 608499 -141662945 + MER2 DNA MER2_type 161 345 0 1734 142 42 21 chr9 608524 608812 -141662632 + AluJb SINE Alu 3 296 -16 500 266 97 7 chr9 609998 610152 -141661292 - MIR SINE MIR -75 187 20 194 133 67 22 chr9 611685 611730 -141659714 + L2 LINE L2 2677 2723 -591 1498 143 23 37 chr9 613426 613588 -141657856 - AluSx SINE Alu -16 296 138 2235 92 0 0 chr9 613588 613882 -141657562 - AluY SINE Alu -12 299 6 1498 143 23 37 chr9 613882 614019 -141657425 - AluSx SINE Alu -174 138 1 234 196 78 0 chr9 615455 615506 -141655938 - L1PA15-16 LINE L1 -6208 641 587 1628 151 36 4 chr9 615683 615962 -141655482 + AluJo SINE Alu 1 288 -24 2307 92 0 3 chr9 618560 618863 -141652581 - AluY SINE Alu -9 302 1 221 115 0 19 chr9 619414 619466 -141651978 + (GA)n Simple_repeat Simple_repeat 1 51 0 1635 186 20 0 chr9 619962 620258 -141651186 + AluJo SINE Alu 5 306 -6 713 180 0 43 chr9 620407 620546 -141650898 + FLAM_A SINE Alu 1 133 0 1419 129 126 16 chr9 620980 621258 -141650186 + AluSg SINE Alu 1 306 0 203 222 0 22 chr9 621268 621313 -141650131 - MER5A DNA MER1_type -108 81 38 646 226 97 0 chr9 622918 623113 -141648331 + L1ME3A LINE L1 5944 6157 -13 652 307 68 43 chr9 623307 623704 -141647740 + MLT1I LTR MaLR 3 409 0 664 181 22 14 chr9 623789 623927 -141647517 - MER105 DNA DNA -28 176 38 1065 190 16 0 chr9 623996 624180 -141647264 - MER5A DNA MER1_type -2 187 1 2273 100 0 0 chr9 624583 624884 -141646560 + AluSq SINE Alu 1 301 -12 2050 129 0 0 chr9 625473 625767 -141645677 - AluSx SINE Alu -17 295 2 1982 97 0 33 chr9 625988 626288 -141645156 + AluSx SINE Alu 1 290 -22 595 350 45 8 chr9 626843 627089 -141644355 - MLT1H LTR MaLR -273 276 22 1986 125 7 0 chr9 627490 627779 -141643665 - AluSx SINE Alu -21 291 1 2182 97 0 25 chr9 628586 628906 -141642538 - AluSx SINE Alu 0 312 1 2114 99 3 3 chr9 629180 629472 -141641972 - AluSg SINE Alu -15 295 4 197 273 13 39 chr9 629490 629567 -141641877 + L3 LINE CR1 1245 1319 -258 1977 122 7 7 chr9 629888 630191 -141641253 - AluSx SINE Alu -9 303 1 246 32 0 0 chr9 630321 630352 -141641092 + (TG)n Simple_repeat Simple_repeat 2 32 0 1013 177 74 5 chr9 630386 630589 -141640855 - AluJb SINE Alu -13 299 83 2061 189 16 2 chr9 630698 631122 -141640322 - L1MB4 LINE L1 0 6180 5751 1583 141 82 4 chr9 631137 631406 -141640038 - AluJb SINE Alu -22 290 1 665 254 78 20 chr9 631591 631835 -141639609 - MIR SINE MIR -3 259 2 1370 230 60 7 chr9 632954 633398 -141638046 - MLT2B1 LTR ERVL 0 520 1 323 305 29 0 chr9 634261 634366 -141637078 + L2 LINE L2 2560 2667 -647 2298 81 0 0 chr9 635255 635563 -141635881 + AluY SINE Alu 1 308 -3 1665 140 0 11 chr9 635605 635876 -141635568 + AluSx SINE Alu 1 268 -44 26 98 0 0 chr9 635907 635989 -141635455 + AT_rich Low_complexity Low_complexity 1 82 0 511 303 26 7 chr9 636453 636605 -141634839 + MIR SINE MIR 21 175 -87 767 136 0 0 chr9 636696 636806 -141634638 + AluSq/x SINE Alu 2 111 -202 4147 125 86 26 chr9 636808 637542 -141633902 + MER4E LTR ERV1 2 779 0 697 123 38 0 chr9 637542 637648 -141633796 + MER50 LTR ERV1 595 704 -30 187 368 123 0 chr9 637659 637765 -141633679 - MIR SINE MIR -60 148 30 192 280 140 10 chr9 638126 638226 -141633218 + MIR SINE MIR 76 188 -74 30263 115 20 55 chr9 638572 644976 -141626468 + L1PA8 LINE L1 12 6172 0 2082 118 26 3 chr9 645133 645438 -141626006 + AluSx SINE Alu 1 312 0 261 0 0 0 chr9 645441 645470 -141625974 + (GAAAA)n Simple_repeat Simple_repeat 2 30 0 1710 109 13 63 chr9 645627 645929 -141625515 - AluSx SINE Alu 0 312 26 1663 135 60 0 chr9 645989 646256 -141625188 + AluSq SINE Alu 21 303 -10 1056 146 0 0 chr9 646424 646588 -141624856 - AluSq SINE Alu -15 298 135 2015 131 0 0 chr9 646590 646880 -141624564 - AluSx SINE Alu -22 290 1 1917 132 7 0 chr9 646952 647241 -141624203 + AluSp SINE Alu 9 299 -14 264 30 0 0 chr9 647243 647276 -141624168 + (TA)n Simple_repeat Simple_repeat 1 33 0 657 209 67 53 chr9 647289 647449 -141623995 + MLT1E LTR MaLR 1 166 -427 1611 148 36 43 chr9 647449 647753 -141623691 - AluSx SINE Alu -10 302 1 657 209 67 53 chr9 647753 647817 -141623627 + MLT1E LTR MaLR 166 228 -365 1384 290 52 44 chr9 647840 648382 -141623062 + L1MA6 LINE L1 160 705 -6144 240 35 0 0 chr9 648708 648737 -141622707 + (CA)n Simple_repeat Simple_repeat 1 29 0 3982 219 57 26 chr9 648756 649396 -141622048 + L1MA6 LINE L1 1383 2002 -4847 1603 184 0 0 chr9 649396 649663 -141621781 + AluJb SINE Alu 1 267 -45 3982 219 57 26 chr9 649663 649853 -141621591 + L1MA6 LINE L1 2002 2185 -4664 1340 197 49 21 chr9 649853 650137 -141621307 + AluJo SINE Alu 1 292 -20 3982 219 57 26 chr9 650137 650444 -141621000 + L1MA6 LINE L1 2185 2556 -4293 11903 169 52 27 chr9 650454 651837 -141619607 + L1MA6 LINE L1 3434 4780 -2222 8884 50 8 2 chr9 651837 652900 -141618544 + MER11C LTR ERVK 1 1070 -1 11903 169 52 27 chr9 652900 653538 -141617906 + L1MA6 LINE L1 4780 5400 -1602 2070 124 0 7 chr9 653538 653836 -141617608 - AluSx SINE Alu -12 300 5 11903 169 52 27 chr9 653836 654280 -141617164 + L1MA6 LINE L1 5400 5831 -1171 2031 102 0 11 chr9 654280 654564 -141616880 - AluSx SINE Alu -31 281 1 11903 169 52 27 chr9 654564 655456 -141615988 + L1MA6 LINE L1 5831 7002 0 1322 150 184 83 chr9 655467 655874 -141615570 - LTR47A LTR ERVL 0 452 5 1170 228 64 10 chr9 655977 656288 -141615156 - L1MA6 LINE L1 -6 6294 5967 3393 168 66 138 chr9 656374 656757 -141614687 - MER21A LTR ERV1 -16 915 506 2219 102 0 7 chr9 656757 657062 -141614382 + AluSx SINE Alu 1 303 -9 3393 168 66 138 chr9 657062 657649 -141613795 - MER21A LTR ERV1 -425 506 15 227 326 54 86 chr9 657874 658187 -141613257 + MLT1I-int LTR MaLR 1039 1341 -30 1446 248 18 33 chr9 658232 658559 -141612885 + MLT1I LTR MaLR 9 330 -79 1308 206 44 24 chr9 658559 658855 -141612589 + AluSq SINE Alu 1 302 -1 1446 248 18 33 chr9 658855 658926 -141612518 + MLT1I LTR MaLR 330 401 -8 1598 174 32 76 chr9 659232 659456 -141611988 - MLT1B LTR MaLR 0 390 191 2001 109 24 0 chr9 659456 659749 -141611695 - AluSq SINE Alu -13 300 1 1598 174 32 76 chr9 659749 659932 -141611512 - MLT1B LTR MaLR -199 191 1 414 292 137 0 chr9 660528 660689 -141610755 + MIR SINE MIR 77 259 -3 198 274 55 14 chr9 660678 660751 -141610693 + L2 LINE L2 3238 3313 0 * 1896 136 18 0 chr9 661134 661420 -141610024 + AluSc SINE Alu 1 291 -18 1800 172 13 0 chr9 661428 661736 -141609708 + AluJb SINE Alu 1 312 0 1164 204 0 0 chr9 661736 661758 -141609686 + AluJo SINE Alu 1 330 0 1543 158 71 128 chr9 662021 662385 -141609059 - MLT1C LTR MaLR -2 465 135 1734 147 34 0 chr9 662385 662678 -141608766 - AluJb SINE Alu -9 303 1 1543 158 71 128 chr9 662678 662806 -141608638 - MLT1C LTR MaLR -332 135 1 436 252 72 14 chr9 662919 663058 -141608386 - MIR SINE MIR -18 244 98 2058 98 3 20 chr9 663268 663565 -141607879 - AluSx SINE Alu -20 292 1 2173 84 3 0 chr9 663994 664280 -141607164 - AluSg SINE Alu -23 287 1 277 292 68 114 chr9 664410 664718 -141606726 - L2 LINE L2 0 3272 2979 1423 147 9 0 chr9 665433 665651 -141605793 - AluJb SINE Alu -19 293 74 257 222 19 0 chr9 665652 665706 -141605738 + LTR67 LTR ERVL 495 549 -8 378 232 11 17 chr9 665811 665904 -141605540 - AluS SINE Alu -228 75 1 1143 166 5 0 chr9 666171 666358 -141605086 - MER5A DNA MER1_type 0 189 2 519 219 80 22 chr9 666403 666540 -141604904 + LTR67 LTR ERVL 405 549 -8 2187 104 0 16 chr9 667019 667335 -141604109 - AluSq SINE Alu -2 311 1 1755 100 108 0 chr9 667731 667990 -141603454 - AluSg SINE Alu -17 293 7 381 202 326 8 chr9 668159 668288 -141603156 + MER5B DNA MER1_type 5 174 -4 323 207 49 0 chr9 668296 668388 -141603056 - MIR SINE MIR -73 135 32 1080 186 0 69 chr9 668708 668892 -141602552 - AluJo SINE Alu -23 289 94 2263 88 0 0 chr9 668892 669187 -141602257 - AluSg SINE Alu -15 295 1 297 0 0 0 chr9 669187 669220 -141602224 + (TTTA)n Simple_repeat Simple_repeat 2 34 0 1080 186 0 69 chr9 669220 669281 -141602163 - AluJo SINE Alu -216 96 60 1781 136 11 7 chr9 669410 669697 -141601747 + AluSg SINE Alu 1 288 -22 2466 51 0 10 chr9 669732 670046 -141601398 - AluY SINE Alu 0 311 1 418 247 155 12 chr9 670090 670284 -141601160 - L1MC4a LINE L1 -202 5919 5708 2138 112 3 0 chr9 670287 670591 -141600853 + AluSx SINE Alu 1 305 -7 2428 48 0 0 chr9 671031 671326 -141600118 - AluY SINE Alu -16 295 1 334 266 70 8 chr9 671377 671505 -141599939 + L1ME LINE L1 5548 5683 -438 637 309 85 0 chr9 671505 671728 -141599716 + MIR SINE MIR 20 261 -1 303 242 162 20 chr9 671815 671914 -141599530 + L1ME4a LINE L1 6004 6116 -5 1848 159 29 35 chr9 671952 672254 -141599190 - MER2 DNA MER2_type 0 344 43 2134 98 0 16 chr9 672254 672559 -141598885 + AluSx SINE Alu 1 300 -12 1848 159 29 35 chr9 672559 672602 -141598842 - MER2 DNA MER2_type -301 43 1 1648 144 4 4 chr9 673073 673337 -141598107 + AluSx SINE Alu 39 302 -10 1569 156 64 14 chr9 675428 675711 -141595733 - MLT1C LTR MaLR 0 467 171 2100 115 0 10 chr9 675723 676037 -141595407 - AluSx SINE Alu -1 311 1 276 254 56 16 chr9 676086 676212 -141595232 + L1ME LINE L1 5758 5888 -233 712 322 135 24 chr9 676287 676746 -141594698 + L2 LINE L2 2804 3313 0 2194 87 10 3 chr9 676756 677067 -141594377 + AluSq SINE Alu 1 313 0 946 156 12 0 chr9 677827 677987 -141593457 - AluSg/x SINE Alu -8 304 143 431 154 121 0 chr9 678096 678173 -141593271 + MLT1A1 LTR MaLR 1 92 -273 2129 109 0 7 chr9 678173 678475 -141592969 + AluSq SINE Alu 1 300 -13 431 154 121 0 chr9 678475 678488 -141592956 + MLT1A1 LTR MaLR 92 102 -263 366 127 18 0 chr9 678521 678576 -141592868 + MSTD LTR MaLR 341 396 0 217 173 19 0 chr9 678765 678817 -141592627 + A-rich Low_complexity Low_complexity 6 58 0 709 221 128 0 chr9 679256 679451 -141591993 - MIR SINE MIR -35 227 8 1402 278 57 15 chr9 679554 680026 -141591418 + LTR33 LTR ERVL 24 515 -6 514 260 117 0 chr9 680369 680523 -141590921 + MIR SINE MIR 49 220 -42 1376 102 13 35 chr9 680523 680749 -141590695 + AluSc SINE Alu 81 301 -8 991 10 59 22 chr9 680825 681250 -141590194 + (TG)n Simple_repeat Simple_repeat 1 440 0 607 198 27 0 chr9 681290 681401 -141590043 + MER106B DNA MER1_type 42 155 -904 21 36 0 0 chr9 681404 681432 -141590012 + AT_rich Low_complexity Low_complexity 1 28 0 358 179 0 0 chr9 681511 681567 -141589877 + MLT1A2 LTR MaLR 1 56 -318 2447 59 0 0 chr9 681568 681871 -141589573 + AluSg SINE Alu 1 303 -7 805 213 63 19 chr9 681871 682078 -141589366 + MLT1A2 LTR MaLR 159 374 0 1520 170 21 24 chr9 682171 682459 -141588985 + AluJo SINE Alu 11 297 -15 1866 143 3 19 chr9 683006 683313 -141588131 - AluSx SINE Alu -10 302 1 379 309 104 53 chr9 683532 683869 -141587575 + L2 LINE L2 2945 3298 -15 198 103 0 0 chr9 683985 684014 -141587430 + (A)n Simple_repeat Simple_repeat 1 29 0 1843 284 59 38 chr9 684516 685224 -141586220 + L1MEd LINE L1 1 723 -5396 2062 127 0 19 chr9 685316 685632 -141585812 + AluSx SINE Alu 1 310 -2 2064 119 3 3 chr9 685764 686074 -141585370 + AluSx SINE Alu 1 310 -2 478 291 179 14 chr9 686232 686455 -141584989 + MIR SINE MIR 3 262 0 1517 185 35 3 chr9 686587 686874 -141584570 + AluJo SINE Alu 2 297 -15 2296 183 71 54 chr9 686934 687080 -141584364 + L1MD1 LINE L1 5061 5203 -1039 1693 163 0 26 chr9 687080 687386 -141584058 + AluJo SINE Alu 1 298 -14 2296 183 71 54 chr9 687386 687465 -141583979 + L1MD1 LINE L1 5203 5279 -963 2082 121 0 16 chr9 687465 687778 -141583666 - AluSx SINE Alu -4 308 1 1876 132 10 3 chr9 687780 688069 -141583375 - AluJb SINE Alu -9 303 13 2296 183 71 54 chr9 688069 688375 -141583069 + L1MD1 LINE L1 5279 5578 -664 2236 109 0 0 chr9 688375 688688 -141582756 - AluSq SINE Alu 0 313 1 2296 183 71 54 chr9 688688 689119 -141582325 + L1MD1 LINE L1 5578 6070 -172 1158 243 28 12 chr9 688909 689234 -141582210 + L1MB8 LINE L1 5843 6172 -6 * 1505 178 7 17 chr9 689250 689537 -141581907 + AluJo SINE Alu 11 294 -18 2185 98 0 0 chr9 689537 689823 -141581621 + AluSg SINE Alu 1 286 -24 2187 76 26 7 chr9 689837 690128 -141581316 + AluSg1 SINE Alu 1 300 -9 270 115 0 0 chr9 690128 690180 -141581264 + (TA)n Simple_repeat Simple_repeat 2 53 0 2187 76 26 7 chr9 690180 690191 -141581253 + AluSg1 SINE Alu 300 309 0 263 286 118 17 chr9 690526 690645 -141580799 - L2 LINE L2 -21 3251 3121 482 250 24 18 chr9 691443 691588 -141579856 + L1ME3 LINE L1 5998 6146 -16 1848 116 61 0 chr9 691588 691865 -141579579 - AluSx SINE Alu -18 294 1 482 250 24 18 chr9 691865 691883 -141579561 + L1ME3 LINE L1 6146 6162 0 644 130 43 9 chr9 691894 692009 -141579435 + L1MB3 LINE L1 6063 6181 -2 910 174 6 6 chr9 692067 692228 -141579216 + AluJb SINE Alu 1 161 -151 207 0 0 0 chr9 692253 692276 -141579168 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 503 300 62 12 chr9 692665 692825 -141578619 - MIR3 SINE MIR -9 199 32 1915 148 7 0 chr9 692922 693232 -141578212 - AluJo SINE Alu 0 312 1 2252 69 0 0 chr9 693267 693580 -141577864 - AluY SINE Alu 0 313 1 1492 191 68 3 chr9 693585 693894 -141577550 - L1MB8 LINE L1 -11 6167 5839 273 228 0 0 chr9 693947 694026 -141577418 + GA-rich Low_complexity Low_complexity 3 81 0 335 307 114 55 chr9 694082 694284 -141577160 - MIR SINE MIR -29 233 20 628 243 80 57 chr9 694446 694747 -141576697 + L1MC4a LINE L1 5697 6004 -1804 1996 136 3 0 chr9 694757 695065 -141576379 + AluSx SINE Alu 1 309 -3 194 264 28 42 chr9 695065 695137 -141576307 - L2 LINE L2 -20 3252 3182 1040 146 6 0 chr9 695174 695339 -141576105 - FRAM SINE Alu -15 161 1 252 161 0 61 chr9 695714 695908 -141575536 + AluJo SINE Alu 38 300 -2 436 280 84 0 chr9 695913 696056 -141575388 + MIR SINE MIR 47 201 -61 1778 174 7 0 chr9 696086 696390 -141575054 + AluJb SINE Alu 1 306 -6 953 197 55 24 chr9 696938 697192 -141574252 - MER58B DNA MER1_type 0 341 80 1334 126 37 5 chr9 697193 697408 -141574036 + AluJb SINE Alu 79 300 -12 1319 191 20 20 chr9 697411 697715 -141573729 + AluJb SINE Alu 1 304 -8 754 166 45 85 chr9 697827 698050 -141573394 - AluJo SINE Alu -11 301 88 2124 95 10 3 chr9 698050 698356 -141573088 - AluSx SINE Alu -4 308 1 449 140 40 30 chr9 698415 698515 -141572929 + MER53 DNA DNA 1 101 -88 245 363 0 7 chr9 698577 698723 -141572721 + C-rich Low_complexity Low_complexity 2 146 0 1471 132 8 31 chr9 699699 699956 -141571488 + AluSx SINE Alu 32 282 -30 2208 97 0 0 chr9 700598 700897 -141570547 + AluSc SINE Alu 1 299 -10 2094 117 0 0 chr9 700905 701204 -141570240 + AluSx SINE Alu 1 299 -13 2015 117 0 3 chr9 701239 701544 -141569900 + AluSx SINE Alu 3 306 0 1277 156 5 9 chr9 701561 701785 -141569659 + AluJb SINE Alu 1 223 -89 1795 57 0 4 chr9 701787 702014 -141569430 - AluY SINE Alu -85 226 1 1898 121 47 13 chr9 702071 702236 -141569208 - AluSx SINE Alu 0 312 131 1911 101 21 21 chr9 702236 702548 -141568896 - AluSx SINE Alu 0 312 2 1898 121 47 13 chr9 702548 702680 -141568764 - AluSx SINE Alu -181 131 5 2059 93 4 0 chr9 702842 703158 -141568286 + AluSg SINE Alu 1 317 0 2240 80 7 7 chr9 703162 703463 -141567981 + AluSc SINE Alu 1 301 -8 2417 37 0 7 chr9 703651 703946 -141567498 + AluY SINE Alu 6 298 -13 2162 96 6 10 chr9 704414 704727 -141566717 + AluSp SINE Alu 1 312 -1 794 313 64 0 chr9 704750 704983 -141566461 - MIR SINE MIR 0 262 15 331 262 121 56 chr9 705382 705628 -141565816 + L2 LINE L2 2735 2998 -274 763 214 26 0 chr9 706130 706284 -141565160 - MIR SINE MIR -26 236 79 1693 97 0 4 chr9 706398 706636 -141564808 + AluSq SINE Alu 1 237 -76 834 141 0 15 chr9 706636 706765 -141564679 + AluSg/x SINE Alu 168 294 -18 3210 176 71 69 chr9 706937 707078 -141564366 - L1MB7 LINE L1 -5 6179 6040 309 26 0 0 chr9 707078 707116 -141564328 + (TTTA)n Simple_repeat Simple_repeat 1 38 0 2054 110 7 3 chr9 707119 707410 -141564034 - AluSc SINE Alu -17 292 1 1052 156 0 0 chr9 707413 707573 -141563871 - FRAM SINE Alu -6 160 1 3210 176 71 69 chr9 707573 707897 -141563547 - L1MB7 LINE L1 -146 6038 5716 2025 92 14 17 chr9 707897 708033 -141563411 + AluSq SINE Alu 1 136 -177 2244 94 3 0 chr9 708033 708332 -141563112 + AluSp SINE Alu 1 300 -13 2025 92 14 17 chr9 708332 708489 -141562955 + AluSq SINE Alu 136 293 -20 3210 176 71 69 chr9 708489 708810 -141562634 - L1MB7 LINE L1 -468 5716 5397 1712 159 28 0 chr9 708810 709099 -141562345 - AluJo SINE Alu -15 297 1 3210 176 71 69 chr9 709099 709260 -141562184 - L1MB7 LINE L1 -787 5397 5238 2090 125 3 0 chr9 709260 709572 -141561872 - AluSq SINE Alu 0 313 1 3210 176 71 69 chr9 709572 709663 -141561781 - L1MB7 LINE L1 -946 5238 5117 1918 136 3 3 chr9 709663 709965 -141561479 - AluSx SINE Alu -10 302 1 3210 176 71 69 chr9 709965 710010 -141561434 - L1MB7 LINE L1 -1067 5117 5074 2094 113 3 0 chr9 710210 710502 -141560942 - AluSx SINE Alu -17 295 3 2090 112 0 3 chr9 710504 710799 -141560645 - AluSg SINE Alu -16 294 1 2076 103 3 7 chr9 710801 711101 -141560343 - AluSq SINE Alu -14 299 1 1523 207 0 7 chr9 711412 711550 -141559894 + AluJo SINE Alu 1 138 -174 2300 74 0 0 chr9 711550 711846 -141559598 + AluY SINE Alu 1 296 -15 1523 207 0 7 chr9 711846 712011 -141559433 + AluJo SINE Alu 138 302 -10 396 0 0 0 chr9 712825 712869 -141558575 + (TG)n Simple_repeat Simple_repeat 2 45 0 405 139 93 0 chr9 712870 712956 -141558488 - L1ME2 LINE L1 -12 6152 6059 2365 69 0 3 chr9 714331 714635 -141556809 - AluSx SINE Alu -8 304 2 27 29 0 0 chr9 716651 716685 -141554759 + AT_rich Low_complexity Low_complexity 1 34 0 2355 80 0 6 chr9 716808 717122 -141554322 - AluSx SINE Alu 0 312 1 2006 124 7 0 chr9 717309 717608 -141553836 - AluSx SINE Alu -11 301 1 2041 113 7 10 chr9 718124 718433 -141553011 - AluSx SINE Alu -4 308 1 885 194 0 0 chr9 718680 718845 -141552599 - FRAM SINE Alu -11 165 1 332 224 116 68 chr9 718876 719023 -141552421 + MER5A DNA MER1_type 9 162 -27 183 237 17 51 chr9 719490 719549 -141551895 - MIR3 SINE MIR -18 190 134 795 234 66 5 chr9 719890 720087 -141551357 - MER3 DNA MER1_type 0 209 1 357 264 28 38 chr9 720318 720424 -141551020 + MIR3 SINE MIR 69 173 -35 2210 119 0 3 chr9 720644 720955 -141550489 - AluSx SINE Alu -2 310 1 493 289 76 25 chr9 721147 721344 -141550100 - MIR SINE MIR -54 208 2 2063 93 21 3 chr9 721930 722219 -141549225 - AluSp SINE Alu -19 294 1 2315 104 0 0 chr9 722847 723156 -141548288 + AluSx SINE Alu 1 309 -3 2082 128 3 0 chr9 723334 723638 -141547806 - AluSx SINE Alu -7 305 1 2051 100 17 0 chr9 724038 724337 -141547107 - AluSx SINE Alu -8 304 1 1681 153 23 17 chr9 725187 725487 -141545957 - L1MC1 LINE L1 -16 6317 6016 33 25 0 0 chr9 725536 725576 -141545868 + AT_rich Low_complexity Low_complexity 1 40 0 1454 140 21 103 chr9 725576 725905 -141545539 - AluYb8 SINE Alu -16 302 1 1484 154 3 55 chr9 725906 726198 -141545246 - AluJo SINE Alu -22 290 14 964 144 0 20 chr9 726213 726366 -141545078 - FRAM SINE Alu -11 165 16 1357 141 14 0 chr9 726390 726603 -141544841 - AluSg/x SINE Alu -15 295 80 2354 58 0 7 chr9 726873 727167 -141544277 - AluY SINE Alu -19 292 1 295 297 123 22 chr9 727454 727592 -141543852 + L2 LINE L2 3162 3313 0 1633 159 10 7 chr9 727724 728019 -141543425 - AluJo SINE Alu -16 296 1 2352 72 0 0 chr9 728025 728315 -141543129 - AluSx SINE Alu -20 292 3 2608 196 77 15 chr9 728365 728972 -141542472 - L1MB7 LINE L1 -20 6164 5520 1995 110 28 0 chr9 729133 729415 -141542029 + AluSx SINE Alu 1 290 -22 190 116 47 0 chr9 729415 729458 -141541986 + (TA)n Simple_repeat Simple_repeat 1 45 0 4109 31 0 0 chr9 729726 730205 -141541239 - L1PA4 LINE L1 0 6155 5677 23 33 0 0 chr9 730613 730643 -141540801 + AT_rich Low_complexity Low_complexity 1 30 0 963 147 47 47 chr9 730646 730692 -141540752 - L1MB4 LINE L1 0 6180 6135 2029 90 75 0 chr9 730692 730971 -141540473 + AluSq SINE Alu 1 300 -13 219 36 0 0 chr9 730971 730999 -141540445 + (TA)n Simple_repeat Simple_repeat 2 29 0 963 147 47 47 chr9 730999 731142 -141540302 - L1MB4 LINE L1 -43 6137 5990 2305 77 0 13 chr9 732119 732431 -141539013 + AluSx SINE Alu 5 312 0 1031 248 74 60 chr9 732588 733020 -141538424 - L2 LINE L2 -1 3312 2875 9401 57 12 81 chr9 733156 734603 -141536841 - SVA Other Other 0 1386 40 240 35 0 0 chr9 734612 734641 -141536803 + (AGGGGG)n Simple_repeat Simple_repeat 3 31 0 1900 221 72 70 chr9 734941 735135 -141536309 + MLT1E2 LTR MaLR 2 194 -432 1573 181 7 16 chr9 735135 735438 -141536006 + AluJo SINE Alu 3 302 -10 1900 221 72 70 chr9 735438 735867 -141535577 + MLT1E2 LTR MaLR 194 626 0 508 190 60 9 chr9 735871 735987 -141535457 - L1MB7 LINE L1 -2374 5434 5313 286 313 55 16 chr9 736072 736200 -141535244 - L2 LINE L2 -1099 2215 2083 1891 119 51 0 chr9 736298 736593 -141534851 - AluSx SINE Alu -2 310 1 2314 67 0 7 chr9 736600 736897 -141534547 - AluY SINE Alu -13 298 4 318 285 97 24 chr9 737352 737501 -141533943 + MIR SINE MIR 18 185 -64 2267 98 0 0 chr9 737982 738287 -141533157 + AluSx SINE Alu 1 305 -7 181 241 13 152 chr9 739094 739252 -141532192 + L3b LINE CR1 1103 1238 -345 549 286 92 54 chr9 739575 739816 -141531628 - MIR SINE MIR -12 250 2 1886 129 17 3 chr9 740083 740378 -141531066 - AluJb SINE Alu -13 299 1 196 316 158 11 chr9 740597 740692 -141530752 + MIR SINE MIR 29 137 -71 1776 175 0 3 chr9 740828 741137 -141530307 + AluJb SINE Alu 1 308 -4 2173 91 0 3 chr9 742217 742529 -141528915 + AluSq SINE Alu 2 312 0 1563 163 31 17 chr9 742810 743104 -141528340 - AluJb SINE Alu -10 302 5 1438 148 47 12 chr9 743158 743414 -141528030 - AluJb SINE Alu -34 278 14 2205 57 0 30 chr9 743439 743736 -141527708 - AluY SINE Alu -18 293 6 760 160 15 0 chr9 743743 743874 -141527570 - FLAM_C SINE Alu 0 133 1 2285 199 127 16 chr9 744119 744171 -141527273 - L1MB7 LINE L1 0 6184 6139 2182 79 0 3 chr9 744171 744461 -141526983 - AluSg SINE Alu -21 289 1 2285 199 127 16 chr9 744461 744990 -141526454 - L1MB7 LINE L1 -45 6139 5538 1054 157 47 5 chr9 745013 745204 -141526240 - MLT2B3 LTR ERVL -355 199 1 776 178 16 26 chr9 745204 745395 -141526049 - L1MB7 LINE L1 -717 5467 5279 2154 81 0 42 chr9 745411 745719 -141525725 - AluSq SINE Alu -18 295 1 245 299 123 13 chr9 746016 746170 -141525274 + L3b LINE CR1 1176 1346 -237 2308 81 0 10 chr9 746902 747210 -141524234 - AluY SINE Alu -6 305 1 250 140 53 0 chr9 747863 747920 -141523524 + (TATG)n Simple_repeat Simple_repeat 3 62 0 1592 184 7 3 chr9 748629 748928 -141522516 - AluJo SINE Alu -10 302 3 381 318 175 5 chr9 750850 751061 -141520383 - MIR SINE MIR 0 262 16 5047 201 61 77 chr9 751275 752545 -141518899 - Charlie1a DNA MER1_type -1311 1450 206 2211 110 7 0 chr9 752545 752854 -141518590 + AluSx SINE Alu 1 311 -1 5047 201 61 77 chr9 752854 753057 -141518387 - Charlie1a DNA MER1_type -2555 206 1 333 289 0 25 chr9 753135 753256 -141518188 - MER5B DNA MER1_type -60 118 1 2146 100 6 10 chr9 754861 755172 -141516272 - AluSq SINE Alu -3 310 1 1731 136 17 10 chr9 755612 755907 -141515537 + AluJo SINE Alu 3 299 -13 2152 93 3 13 chr9 756789 757089 -141514355 + AluSx SINE Alu 1 297 -15 4030 163 35 49 chr9 757130 757926 -141513518 - LTR1 LTR ERV1 0 785 1 1989 110 13 10 chr9 758347 758656 -141512788 - AluSx SINE Alu -2 310 1 24 32 0 0 chr9 758770 758801 -141512643 + AT_rich Low_complexity Low_complexity 1 31 0 1004 111 6 47 chr9 759141 759313 -141512131 + AluSq SINE Alu 133 297 -16 263 180 0 20 chr9 760181 760231 -141511213 + L2 LINE L2 3263 3311 -2 1728 143 27 7 chr9 760400 760700 -141510744 - AluJb SINE Alu -6 306 1 869 194 15 61 chr9 760908 760945 -141510499 - MER5A DNA MER1_type -2 187 150 892 133 0 15 chr9 760945 761080 -141510364 + FLAM_C SINE Alu 1 133 0 869 194 15 61 chr9 761080 761238 -141510206 - MER5A DNA MER1_type -39 150 1 829 138 57 13 chr9 762187 762346 -141509098 - FRAM SINE Alu 0 166 1 2117 107 0 49 chr9 762804 763131 -141508313 - AluSx SINE Alu -1 311 1 895 147 0 14 chr9 763158 763301 -141508143 + FLAM_C SINE Alu 1 141 -2 1660 134 0 16 chr9 763323 763576 -141507868 + AluJb SINE Alu 59 307 -5 2143 111 0 32 chr9 763609 763924 -141507520 - AluY SINE Alu -6 305 1 218 200 150 0 chr9 763994 764054 -141507390 - L2 LINE L2 -9 3263 3195 427 257 46 4 chr9 765360 765510 -141505934 + MER58A DNA MER1_type 1 216 -8 315 303 0 10 chr9 766340 766439 -141505005 + (CA)n Simple_repeat Simple_repeat 1 98 0 222 62 0 0 chr9 766887 766919 -141504525 + (TTTG)n Simple_repeat Simple_repeat 2 33 0 2205 104 0 3 chr9 766927 767215 -141504229 - AluSx SINE Alu -25 287 1 216 268 94 71 chr9 767371 767498 -141503946 + L3 LINE CR1 1445 1574 -3 1649 137 13 48 chr9 767622 767902 -141503542 - L1MA9 LINE L1 -1 6311 6042 2395 83 0 0 chr9 767902 768203 -141503241 - AluSc SINE Alu -8 301 1 1649 137 13 48 chr9 768203 768237 -141503207 - L1MA9 LINE L1 -270 6042 6008 1189 102 60 0 chr9 768381 768547 -141502897 - AluSg/x SINE Alu -4 306 131 350 195 78 0 chr9 768547 768624 -141502820 - L1MA9 LINE L1 -296 6016 5934 2344 98 0 0 chr9 768633 768928 -141502516 + AluSg SINE Alu 1 295 -15 2020 88 0 22 chr9 769191 769501 -141501943 - AluSc SINE Alu 0 319 16 660 131 0 0 chr9 769611 769710 -141501734 + FRAM SINE Alu 66 164 -12 2211 118 3 13 chr9 770204 770519 -141500925 - AluSx SINE Alu 0 312 1 1372 133 90 8 chr9 770959 771215 -141500229 - L1 LINE L1 -1577 4569 4293 1648 161 20 43 chr9 772787 773092 -141498352 - AluJo SINE Alu -14 298 1 1860 165 3 19 chr9 773101 773417 -141498027 - AluJb SINE Alu -1 311 1 2440 84 0 0 chr9 773419 773727 -141497717 - AluSx SINE Alu -4 308 1 2391 75 10 0 chr9 774012 774305 -141497139 - AluSx SINE Alu -11 301 6 2175 121 0 7 chr9 774592 774889 -141496555 - AluSx SINE Alu -17 295 1 194 158 0 0 chr9 776664 776702 -141494742 - L2 LINE L2 -20 3252 3215 2321 84 10 0 chr9 776763 777059 -141494385 + AluSp SINE Alu 1 299 -14 543 247 102 24 chr9 777163 777329 -141494115 - MER97b DNA MER1_type? -874 179 1 327 25 0 0 chr9 777575 777615 -141493829 + (TG)n Simple_repeat Simple_repeat 1 40 0 256 283 34 0 chr9 777887 777995 -141493449 - MIR SINE MIR -62 146 31 294 50 0 0 chr9 778121 778161 -141493283 + (CA)n Simple_repeat Simple_repeat 2 41 0 388 256 62 74 chr9 779712 779888 -141491556 + MER112 DNA MER1_type 3 176 -84 261 0 0 0 chr9 779930 779959 -141491485 + (TG)n Simple_repeat Simple_repeat 2 30 0 1804 155 7 17 chr9 780271 780562 -141490882 + AluJo SINE Alu 1 288 -24 1734 180 7 7 chr9 781809 782114 -141489330 - AluJb SINE Alu -7 305 1 702 260 18 27 chr9 783195 783414 -141488030 - MER20 DNA MER1_type -2 217 1 2355 98 7 3 chr9 783581 783888 -141487556 - AluSx SINE Alu 0 312 5 1673 154 44 65 chr9 784054 784437 -141487007 - THE1C LTR MaLR 0 375 1 549 220 54 30 chr9 784863 785031 -141486413 + MER5B DNA MER1_type 1 172 -6 348 137 61 34 chr9 785047 785173 -141486271 + MER58 DNA MER1_type 169 2420 0 1894 135 11 0 chr9 785714 785996 -141485448 + AluSx SINE Alu 1 285 -27 2572 66 0 0 chr9 786393 786697 -141484747 + AluY SINE Alu 1 304 -7 27 29 0 0 chr9 787812 787846 -141483598 + AT_rich Low_complexity Low_complexity 1 34 0 2313 87 0 3 chr9 787846 788133 -141483311 - AluY SINE Alu -25 286 1 1762 178 0 17 chr9 788474 788772 -141482672 - AluJo SINE Alu -19 293 1 3233 245 52 51 chr9 791626 792918 -141478526 - L2 LINE L2 -457 2857 1565 354 220 220 0 chr9 792930 793103 -141478341 + MER5C DNA MER1_type 11 221 -103 3470 145 73 16 chr9 793108 793755 -141477689 - L1MB5 LINE L1 0 6174 5491 1147 130 52 42 chr9 793776 793968 -141477476 + AluJo SINE Alu 85 278 -34 1661 176 8 0 chr9 794012 794279 -141477165 - AluJb SINE Alu -43 269 1 421 195 0 76 chr9 794299 794417 -141477027 + MER5C DNA MER1_type 215 323 -1 220 190 103 0 chr9 794419 794477 -141476967 - L2 LINE L2 -1750 1564 1501 208 253 67 67 chr9 795252 795327 -141476117 - MIR3 SINE MIR -18 190 116 2202 120 0 0 chr9 796171 796472 -141474972 - AluSx SINE Alu -11 301 1 207 211 0 0 chr9 797740 797778 -141473666 + T-rich Low_complexity Low_complexity 3 40 0 284 198 233 0 chr9 797819 797905 -141473539 - MIR SINE MIR -47 215 110 279 0 0 0 chr9 798788 798819 -141472625 + (GA)n Simple_repeat Simple_repeat 2 32 0 558 166 103 34 chr9 800803 800929 -141470515 - MER53 DNA DNA -1 188 72 350 0 44 0 chr9 800929 800974 -141470470 + (TTTA)n Simple_repeat Simple_repeat 2 48 0 1873 134 0 4 chr9 800977 801239 -141470205 - AluSx SINE Alu -51 261 1 558 166 103 34 chr9 801239 801283 -141470161 - MER53 DNA DNA -118 71 2 602 134 0 10 chr9 801400 801497 -141469947 - FLAM_A SINE Alu -12 130 35 1386 153 27 135 chr9 802316 802517 -141468927 - AluJo SINE Alu -14 298 146 2437 69 10 0 chr9 802517 802808 -141468636 - AluY SINE Alu -17 294 1 1386 153 27 135 chr9 802808 802940 -141468504 - AluJo SINE Alu -166 146 1 2097 163 39 5 chr9 802949 803335 -141468109 - L1MB7 LINE L1 0 6184 5786 1293 166 101 93 chr9 803573 803958 -141467486 - MLT1B LTR MaLR -2 388 1 180 0 0 0 chr9 804267 804287 -141467157 + (CATTT)n Simple_repeat Simple_repeat 2 21 0 1268 217 50 34 chr9 804667 804989 -141466455 - MER21B LTR ERV1 -124 739 413 2304 94 0 13 chr9 805015 805313 -141466131 - AluSx SINE Alu -14 298 5 881 210 24 54 chr9 805316 805521 -141465923 - MER21B LTR ERV1 -664 199 1 711 235 96 0 chr9 805712 805899 -141465545 - MER3 DNA MER1_type 0 209 5 616 204 0 72 chr9 806301 806482 -141464962 - L1MB7 LINE L1 -893 5253 5086 1016 169 0 12 chr9 806484 806644 -141464800 + FRAM SINE Alu 1 157 -19 911 165 20 42 chr9 806663 806877 -141464567 - L1M4 LINE L1 -1055 5091 4867 2359 86 3 7 chr9 808570 808871 -141462573 + AluSq SINE Alu 1 300 -13 5211 189 57 13 chr9 808914 811001 -141460443 - L1MB4 LINE L1 0 6180 3989 2589 176 6 6 chr9 811978 812461 -141458983 + L1M3 LINE L1 5310 5792 -388 * 4276 165 55 37 chr9 812454 813826 -141457618 + L1MB3 LINE L1 4787 6183 0 574 305 43 31 chr9 813846 814282 -141457162 - L1MB4 LINE L1 -2203 3943 3491 1769 169 3 0 chr9 814371 814673 -141456771 - AluJb SINE Alu -9 303 1 518 297 54 54 chr9 816062 816321 -141455123 + MIR SINE MIR 2 260 -2 1966 120 0 14 chr9 817240 817556 -141453888 - AluSx SINE Alu 0 312 1 354 293 166 50 chr9 818022 818487 -141452957 - L1MC4a LINE L1 -1877 5931 5413 1471 122 32 5 chr9 819253 819474 -141451970 - MER30 DNA MER1_type 0 230 4 195 234 78 47 chr9 819655 819719 -141451725 - MIR3 SINE MIR -1 207 142 700 102 0 0 chr9 819720 819818 -141451626 - AluSg/x SINE Alu -8 302 205 320 54 161 18 chr9 819819 819875 -141451569 - MIR SINE MIR -55 153 90 1889 150 17 0 chr9 820879 821004 -141450440 + AluSx SINE Alu 6 127 -185 387 0 0 0 chr9 821004 821047 -141450397 + (TAA)n Simple_repeat Simple_repeat 2 44 0 1889 150 17 0 chr9 821047 821215 -141450229 + AluSx SINE Alu 127 304 -8 1226 155 163 26 chr9 821224 821488 -141449956 + AluJo SINE Alu 2 301 -1 3576 171 28 21 chr9 821493 822212 -141449232 - L1MA10 LINE L1 -7 6327 5604 501 254 191 11 chr9 822512 822701 -141448743 + MIR SINE MIR 40 262 0 33 25 0 0 chr9 823285 823325 -141448119 + AT_rich Low_complexity Low_complexity 1 40 0 530 309 124 5 chr9 824034 824244 -141447200 - MIR SINE MIR -8 254 20 394 272 54 0 chr9 824249 824341 -141447103 + L2 LINE L2 3168 3264 -8 302 339 16 16 chr9 825122 825243 -141446201 - L1MB4 LINE L1 -3380 2766 2646 2091 103 20 0 chr9 826739 827040 -141444404 - AluSg SINE Alu -3 307 1 230 299 31 10 chr9 827046 827143 -141444301 - L2 LINE L2 -1017 2297 2199 1625 166 14 7 chr9 827528 827811 -141443633 + AluJb SINE Alu 6 290 -22 3656 151 44 27 chr9 827839 828516 -141442928 + L1MB3 LINE L1 5450 6138 -45 1112 144 0 0 chr9 828518 828692 -141442752 + FRAM SINE Alu 1 174 -2 22 0 0 0 chr9 828820 828842 -141442602 + AT_rich Low_complexity Low_complexity 1 22 0 1237 127 84 14 chr9 829040 829253 -141442191 - L1PA16 LINE L1 0 6166 5939 1935 143 3 0 chr9 829828 830135 -141441309 + AluSx SINE Alu 1 308 -4 2015 122 0 3 chr9 830473 830768 -141440676 - AluSx SINE Alu -18 294 1 2055 126 3 0 chr9 831618 831928 -141439516 - AluSx SINE Alu -1 311 1 223 333 67 0 chr9 832034 832109 -141439335 - L2 LINE L2 -2 3270 3191 291 227 82 31 chr9 832599 832696 -141438748 - MIR SINE MIR -56 206 105 394 171 13 13 chr9 833147 833223 -141438221 - MIR SINE MIR -114 148 73 296 262 37 0 chr9 833983 834061 -141437383 - MIR SINE MIR -58 150 76 194 0 0 37 chr9 834646 834673 -141436771 + (GGGTG)n Simple_repeat Simple_repeat 5 30 0 465 324 62 6 chr9 836849 837025 -141434419 - L1ME LINE L1 -462 5659 5474 23 0 0 0 chr9 838443 838466 -141432978 + AT_rich Low_complexity Low_complexity 1 23 0 205 161 0 0 chr9 840040 840071 -141431373 + polypyrimidine Low_complexity Low_complexity 1 31 0 23 33 0 0 chr9 840616 840646 -141430798 + AT_rich Low_complexity Low_complexity 1 30 0 21 0 0 0 chr9 842974 842995 -141428449 + GC_rich Low_complexity Low_complexity 1 21 0 1839 101 63 7 chr9 843253 843539 -141427905 + AluSx SINE Alu 3 304 -8 208 53 53 0 chr9 847584 847622 -141423822 + (TTTG)n Simple_repeat Simple_repeat 1 40 0 201 288 18 45 chr9 848616 848727 -141422717 + G-rich Low_complexity Low_complexity 3 110 0 326 222 9 19 chr9 849389 849497 -141421947 + (CCG)n Simple_repeat Simple_repeat 3 109 0 238 152 0 0 chr9 852685 852731 -141418713 - LTR66 LTR ERVL -168 442 397 437 209 9 9 chr9 854134 854239 -141417205 + MER53 DNA DNA 84 188 -1 229 220 17 17 chr9 854908 854967 -141416477 + CT-rich Low_complexity Low_complexity 3 61 0 220 299 46 46 chr9 855638 855725 -141415719 + L2 LINE L2 3186 3272 0 2081 88 10 10 chr9 856560 856857 -141414587 - AluY SINE Alu -14 297 1 2153 105 0 0 chr9 858711 859006 -141412438 + AluSg SINE Alu 1 295 -15 2852 137 46 0 chr9 859134 859513 -141411931 - L1MB3 LINE L1 -1 6182 5775 405 0 0 0 chr9 859513 859558 -141411886 + (TG)n Simple_repeat Simple_repeat 2 46 0 2852 137 46 0 chr9 859558 859654 -141411790 - L1MB3 LINE L1 -408 5775 5685 319 214 0 0 chr9 864032 864088 -141407356 - L2 LINE L2 0 3272 3217 1760 182 34 0 chr9 864901 865192 -141406252 + AluJb SINE Alu 1 301 -11 2393 107 0 0 chr9 865654 865962 -141405482 + AluSx SINE Alu 1 308 -4 185 310 200 0 chr9 866493 866638 -141404806 + MER5A DNA MER1_type 10 183 -6 311 361 67 0 chr9 868309 868489 -141402955 + MER91A DNA MER1_type 4 195 -1 2394 102 0 0 chr9 868929 869233 -141402211 - AluSc SINE Alu -5 304 1 2215 96 7 0 chr9 869566 869901 -141401543 + AluSq SINE Alu 1 313 0 1638 156 23 0 chr9 869987 870243 -141401201 + AluJo SINE Alu 1 262 -50 484 201 195 0 chr9 870253 870412 -141401032 - MIR SINE MIR 0 262 73 201 149 0 64 chr9 872114 872161 -141399283 + (GGAGAA)n Simple_repeat Simple_repeat 4 47 0 376 200 44 0 chr9 872942 873032 -141398412 - MER53 DNA DNA -15 174 81 279 0 0 0 chr9 873040 873071 -141398373 + (TG)n Simple_repeat Simple_repeat 2 32 0 511 163 24 65 chr9 873172 873295 -141398149 - MER53 DNA DNA -71 118 1 506 260 46 35 chr9 873376 873549 -141397895 + Charlie8 DNA MER1_type 2 176 -2241 211 238 32 16 chr9 873805 873868 -141397576 + MIR SINE MIR 85 148 -60 618 158 10 0 chr9 873963 874064 -141397380 - U6 snRNA snRNA -5 102 1 321 174 58 0 chr9 874266 874335 -141397109 - MLT1I LTR MaLR -11 398 326 1882 124 34 4 chr9 874402 874669 -141396775 - AluSx SINE Alu -15 297 23 285 287 53 0 chr9 874766 874860 -141396584 - MLT1J2 LTR MaLR -306 144 46 2296 107 3 0 chr9 875092 875391 -141396053 - AluSq SINE Alu -13 300 1 231 254 0 0 chr9 875412 875471 -141395973 - MIR SINE MIR -58 204 146 1754 161 0 62 chr9 876215 876538 -141394906 - AluJb SINE Alu -9 303 1 811 266 71 77 chr9 876556 877165 -141394279 - L1MC4a LINE L1 -1845 5963 5359 1879 152 0 23 chr9 877600 877909 -141393535 + AluJb SINE Alu 1 302 -10 444 292 127 56 chr9 877910 878468 -141392976 - L1MC5 LINE L1 -38 7923 7326 235 184 28 47 chr9 878674 878717 -141392727 - L1MC4 LINE L1 -835 7207 7165 2313 87 13 10 chr9 878717 879026 -141392418 - AluSx SINE Alu -1 311 2 235 184 28 47 chr9 879026 879089 -141392355 - L1MC4 LINE L1 -877 7165 7082 550 284 153 5 chr9 879964 880179 -141391265 + MIR SINE MIR 3 249 -13 4964 121 16 15 chr9 880404 881199 -141390245 + L1MA4A LINE L1 5507 6302 -1 331 253 40 0 chr9 882034 882133 -141389311 + MER5A DNA MER1_type 13 115 -74 426 257 48 0 chr9 882192 882297 -141389147 + MER5B DNA MER1_type 1 110 -68 1606 187 3 20 chr9 882727 883026 -141388418 - AluJo SINE Alu -18 294 1 284 241 0 0 chr9 883034 883092 -141388352 + MER5A DNA MER1_type 132 189 0 2169 103 0 48 chr9 883493 883804 -141387640 - AluSx SINE Alu -16 296 1 502 237 8 38 chr9 884415 884546 -141386898 - Charlie8 DNA MER1_type -2203 214 88 192 77 0 0 chr9 884556 884582 -141386862 + (A)n Simple_repeat Simple_repeat 1 26 0 2359 85 3 0 chr9 884704 884997 -141386447 + AluSx SINE Alu 1 294 -18 524 251 71 51 chr9 885501 885812 -141385632 + HAL1b LINE L1 658 974 -374 3419 233 40 7 chr9 885935 886823 -141384621 - L1ME3A LINE L1 -18 6152 5237 2126 266 74 17 chr9 886885 887514 -141383930 - L1ME3A LINE L1 -1121 5025 4343 2181 128 0 0 chr9 887514 887812 -141383632 + AluJb SINE Alu 1 298 -14 2126 266 74 17 chr9 887812 887953 -141383491 - L1ME3A LINE L1 -1803 4343 4211 55 0 0 0 chr9 888287 888342 -141383102 + AT_rich Low_complexity Low_complexity 1 55 0 2143 112 3 3 chr9 888342 888636 -141382808 - AluSx SINE Alu -18 294 1 1991 150 0 0 chr9 888645 888932 -141382512 - AluSx SINE Alu -25 287 1 2216 178 22 10 chr9 888942 889504 -141381940 - L1M4 LINE L1 -704 5480 4911 457 303 198 17 chr9 890640 890802 -141380642 - L2 LINE L2 -1 3271 3140 1916 112 11 4 chr9 890802 891070 -141380374 + AluSq SINE Alu 1 270 -43 457 303 198 17 chr9 891070 891371 -141380073 - L2 LINE L2 -132 3140 2709 1809 159 18 0 chr9 892376 892659 -141378785 - AluJb SINE Alu -24 288 1 223 156 67 0 chr9 892831 892876 -141378568 - L2 LINE L2 -93 3220 3173 582 281 95 33 chr9 893738 893980 -141377464 + MIR SINE MIR 6 262 0 3051 201 60 31 chr9 894120 894282 -141377162 - L1ME1 LINE L1 -126 6040 5884 2260 122 0 0 chr9 894282 894577 -141376867 - AluSx SINE Alu -17 295 1 3051 201 60 31 chr9 894577 895229 -141376215 - L1ME1 LINE L1 -282 5884 5200 234 278 204 12 chr9 895905 896067 -141375377 - MIR SINE MIR -58 204 12 2073 140 3 0 chr9 896822 897114 -141374330 + AluSx SINE Alu 1 293 -19 222 80 60 0 chr9 897987 898037 -141373407 + CT-rich Low_complexity Low_complexity 1 53 0 1702 167 14 24 chr9 898037 898325 -141373119 - AluJb SINE Alu -27 285 1 398 279 84 19 chr9 898386 898540 -141372904 - L1ME LINE L1 -345 5776 5613 687 217 24 18 chr9 898545 898711 -141372733 + MIR SINE MIR 75 241 -21 2239 117 0 7 chr9 899333 899631 -141371813 - AluSx SINE Alu -16 296 1 658 291 78 21 chr9 899973 900419 -141371025 - L1MC/D LINE L1 -328 5793 5337 231 197 13 26 chr9 900498 900574 -141370870 + CT-rich Low_complexity Low_complexity 2 76 0 861 191 33 6 chr9 902351 902534 -141368910 + MER5A DNA MER1_type 2 189 0 1564 184 28 31 chr9 902601 902955 -141368489 - L1MA9 LINE L1 -2 6310 5958 186 287 223 0 chr9 902984 903078 -141368366 - MIR SINE MIR -121 141 27 1993 112 64 14 chr9 903101 903396 -141368048 + AluSx SINE Alu 1 310 -2 530 208 69 39 chr9 903485 903615 -141367829 - MER63A DNA MER1_type -1 209 76 292 175 15 153 chr9 904971 905050 -141366394 + L1ME2 LINE L1 6038 6092 -72 1574 194 17 10 chr9 905050 905343 -141366101 + AluJb SINE Alu 1 295 -17 292 175 15 153 chr9 905343 905400 -141366044 + L1ME2 LINE L1 6092 6155 -9 222 185 19 0 chr9 905950 906004 -141365440 + MIR3 SINE MIR 153 207 -1 1932 139 33 3 chr9 906907 907209 -141364235 - AluJb SINE Alu -1 311 1 368 231 108 0 chr9 907299 907429 -141364015 - MER117 DNA MER1_type -50 147 4 295 155 0 34 chr9 907789 907861 -141363583 + Alu SINE Alu 244 302 0 1738 172 37 3 chr9 908034 908330 -141363114 - AluJb SINE Alu -6 306 1 410 310 43 27 chr9 908648 908832 -141362612 + MIR SINE MIR 11 197 -65 256 86 0 0 chr9 908883 908918 -141362526 - U2 snRNA snRNA -153 35 1 521 278 98 8 chr9 909032 909296 -141362148 + L2 LINE L2 2719 3017 -296 37 62 0 0 chr9 909362 909427 -141362017 + AT_rich Low_complexity Low_complexity 1 65 0 1879 164 3 13 chr9 912623 912935 -141358509 - AluJb SINE Alu -3 309 1 291 268 0 0 chr9 913778 913849 -141357595 - MIR SINE MIR -110 152 82 200 216 134 82 chr9 915386 915483 -141355961 - MIR3 SINE MIR -54 154 53 258 290 11 32 chr9 916382 916475 -141354969 - MIR3 SINE MIR -35 173 83 22 0 0 0 chr9 916529 916551 -141354893 + GC_rich Low_complexity Low_complexity 1 22 0 2611 32 3 10 chr9 917257 917568 -141353876 - AluY SINE Alu -2 309 1 24 0 0 0 chr9 918568 918592 -141352852 + AT_rich Low_complexity Low_complexity 1 24 0 1567 130 0 20 chr9 918683 918937 -141352507 - AluJb SINE Alu -34 278 30 210 209 0 90 chr9 919017 919084 -141352360 + G-rich Low_complexity Low_complexity 6 66 0 268 180 107 41 chr9 919463 919585 -141351859 - MIR SINE MIR -98 164 35 211 280 97 21 chr9 920857 920950 -141350494 + MIR SINE MIR 108 207 -55 218 111 0 44 chr9 921386 921431 -141350013 - L2 LINE L2 -9 3304 3262 562 255 78 29 chr9 923594 923837 -141347607 + MER112 DNA MER1_type 1 255 -1 262 235 23 102 chr9 924488 924649 -141346795 + MIR SINE MIR 42 192 -63 188 209 115 135 chr9 927181 927291 -141344153 + MIR SINE MIR 2 110 -152 2121 102 3 24 chr9 927291 927586 -141343858 - AluSg SINE Alu -2 308 20 188 209 115 135 chr9 927586 927623 -141343821 + MIR SINE MIR 110 146 -116 186 269 77 0 chr9 927765 927817 -141343627 + L2 LINE L2 3258 3313 0 2073 132 0 13 chr9 928462 928765 -141342679 - AluJo SINE Alu -13 299 1 373 288 127 23 chr9 930041 930264 -141341180 + L1MC4a LINE L1 5576 5774 -390 1736 157 19 32 chr9 930264 930577 -141340867 + AluJo SINE Alu 1 309 -3 2338 87 3 10 chr9 930579 930889 -141340555 + AluSg SINE Alu 1 308 -2 373 288 127 23 chr9 930889 930962 -141340482 + L1MC4a LINE L1 5698 5762 -402 226 180 98 49 chr9 931376 931437 -141340007 + MLT1J LTR MaLR 111 174 -337 255 278 81 52 chr9 932237 932410 -141339034 + L2 LINE L2 3112 3289 -24 2201 227 39 20 chr9 933476 933965 -141337479 - MLT1D LTR MaLR -7 498 1 2202 76 31 24 chr9 933978 934269 -141337175 - AluSx SINE Alu -19 293 1 239 200 0 0 chr9 934836 934881 -141336563 - LTR33 LTR ERVL 0 521 477 314 318 228 5 chr9 935623 935834 -141335610 - MIR SINE MIR -2 260 3 933 275 152 7 chr9 935980 936395 -141335049 + L2 LINE L2 2190 2664 -650 451 288 29 79 chr9 936411 936727 -141334717 + L2 LINE L2 2563 2862 -452 23474 29 0 0 chr9 937085 940474 -141330970 + L1PA3 LINE L1 2639 6025 -130 568 292 32 55 chr9 941015 941327 -141330117 - L1ME LINE L1 -305 5816 5512 25 51 0 0 chr9 941383 941422 -141330022 + AT_rich Low_complexity Low_complexity 1 39 0 29 47 0 0 chr9 941731 941774 -141329670 + AT_rich Low_complexity Low_complexity 1 43 0 249 219 0 94 chr9 942328 942424 -141329020 + L2 LINE L2 3227 3313 0 26 64 0 0 chr9 944001 944048 -141327396 + GC_rich Low_complexity Low_complexity 1 47 0 233 270 0 0 chr9 944048 944122 -141327322 + (CGA)n Simple_repeat Simple_repeat 2 75 0 1030 133 0 0 chr9 944407 944550 -141326894 - AluSg SINE Alu -165 145 3 335 278 9 26 chr9 944748 944863 -141326581 - L1MC4a LINE L1 -1866 5942 5830 252 308 11 0 chr9 944903 944994 -141326450 - MIR3 SINE MIR -28 180 89 217 204 20 0 chr9 945168 945217 -141326227 - MIR SINE MIR -125 137 88 278 332 58 13 chr9 946470 946751 -141324693 + L3 LINE CR1 1075 1416 -161 193 296 74 25 chr9 946872 946953 -141324491 - MER5B DNA MER1_type -72 106 22 209 196 0 39 chr9 947369 947420 -141324024 - MIR3 SINE MIR -13 195 147 230 339 16 0 chr9 947425 947487 -141323957 - MIR SINE MIR -112 96 34 389 337 17 6 chr9 947972 948144 -141323300 - MER5A DNA MER1_type -9 180 7 6693 227 57 10 chr9 949121 950889 -141320555 + L1M4 LINE L1 3401 5252 -894 6310 88 15 11 chr9 950890 950950 -141320494 + L1PA8 LINE L1 5254 5312 -860 2279 102 7 0 chr9 950950 951253 -141320191 + AluSq SINE Alu 1 305 -8 6310 88 15 11 chr9 951253 952107 -141319337 + L1PA8 LINE L1 5312 6172 0 11056 158 16 19 chr9 952107 952765 -141318679 + L1P LINE L1 2828 3486 -2660 1101 63 0 7 chr9 952765 952907 -141318537 + L1PA5 LINE L1 6007 6147 -7 11056 158 16 19 chr9 952907 953124 -141318320 + L1P LINE L1 3486 3702 -2444 369 0 0 0 chr9 953124 953165 -141318279 + (CA)n Simple_repeat Simple_repeat 1 41 0 11056 158 16 19 chr9 953165 954317 -141317127 + L1P LINE L1 3702 4851 -1295 3111 94 0 5 chr9 954379 954785 -141316659 + MLT2A1 LTR ERVL 1 404 -40 302 253 101 0 chr9 954785 954884 -141316560 - L1MC4 LINE L1 -1351 6691 6583 439 201 22 39 chr9 954885 955064 -141316380 + (TA)n Simple_repeat Simple_repeat 1 176 0 186 43 0 0 chr9 955118 955141 -141316303 + (TA)n Simple_repeat Simple_repeat 2 24 0 183 42 0 0 chr9 955229 955253 -141316191 + (TA)n Simple_repeat Simple_repeat 1 24 0 439 37 0 0 chr9 955261 955315 -141316129 + MLT2A1 LTR ERVL 391 444 0 6590 86 3 3 chr9 955321 956620 -141314824 + L1PA13 LINE L1 4849 6144 -19 231 167 0 0 chr9 956646 956688 -141314756 + (TATG)n Simple_repeat Simple_repeat 2 43 0 180 0 0 0 chr9 957041 957061 -141314383 + (TTTTG)n Simple_repeat Simple_repeat 1 20 0 186 321 80 51 chr9 957693 957830 -141313614 + MIR3 SINE MIR 3 143 -65 897 219 11 0 chr9 958547 958730 -141312714 + MER5A DNA MER1_type 4 188 -1 353 270 122 15 chr9 960264 960414 -141311030 + MIR SINE MIR 20 186 -60 21 36 0 0 chr9 960480 960508 -141310936 + AT_rich Low_complexity Low_complexity 1 28 0 834 205 5 60 chr9 961654 961854 -141309590 + MER5A DNA MER1_type 1 189 0 1066 156 22 0 chr9 961864 962043 -141309401 - MER20 DNA MER1_type -4 215 33 253 184 88 79 chr9 962239 962353 -141309091 + L1ME4a LINE L1 6006 6120 -1 384 257 179 14 chr9 962792 962932 -141308512 + MER5A DNA MER1_type 27 189 0 324 143 0 0 chr9 963030 963079 -141308365 - MLT1D LTR MaLR 0 505 457 428 240 72 72 chr9 963080 963205 -141308239 - MLT1D LTR MaLR -380 125 1 241 231 58 133 chr9 964638 964811 -141306633 + MLT1L LTR MaLR 438 597 -18 21 0 0 0 chr9 965085 965106 -141306338 + AT_rich Low_complexity Low_complexity 1 21 0 776 230 75 0 chr9 965134 965308 -141306136 + MER5A DNA MER1_type 3 189 0 3401 145 31 22 chr9 965585 966241 -141305203 + L1MB3 LINE L1 5417 6119 -64 1564 146 4 15 chr9 966243 966504 -141304940 - Tigger2 DNA MER2_type 0 2718 2461 1163 119 0 0 chr9 966559 966727 -141304717 - Tigger2 DNA MER2_type -1974 744 577 1367 235 76 53 chr9 966735 967420 -141304024 + MER49 LTR ERV1 5 881 -41 2446 64 0 6 chr9 967420 967731 -141303713 + AluSg SINE Alu 2 310 0 2584 125 48 2 chr9 967739 968179 -141303265 - Tigger2 DNA MER2_type -2202 516 57 198 0 0 0 chr9 968593 968615 -141302829 + (A)n Simple_repeat Simple_repeat 1 22 0 290 127 0 0 chr9 969729 969784 -141301660 - L1MB8 LINE L1 -16 6162 6108 1257 199 39 51 chr9 969809 970165 -141301279 - L1MA10 LINE L1 -7 6327 5976 570 226 25 25 chr9 970159 970318 -141301126 - L1ME1 LINE L1 -70 6096 5938 * 276 276 142 0 chr9 970591 970816 -141300628 + L1MC4a LINE L1 5705 5961 -1847 2353 36 0 0 chr9 971910 972222 -141299222 + AluY SINE Alu 1 312 0 183 250 0 0 chr9 972603 972647 -141298797 - MER5A DNA MER1_type -145 44 1 2121 105 14 0 chr9 972776 973072 -141298372 - AluSq SINE Alu -13 300 1 1569 120 85 108 chr9 973214 973614 -141297830 - L1MB3 LINE L1 -2 6181 5791 180 179 0 0 chr9 973617 973656 -141297788 + (TG)n Simple_repeat Simple_repeat 2 40 0 276 235 11 49 chr9 973992 974175 -141297269 + (CATATA)n Simple_repeat Simple_repeat 3 178 0 587 238 0 2 chr9 974175 974331 -141297113 - L1MB3 LINE L1 -378 5796 5643 23 0 0 0 chr9 974904 974927 -141296517 + AT_rich Low_complexity Low_complexity 1 23 0 269 385 0 8 chr9 975461 975591 -141295853 + LTR16B LTR ERVL 102 230 -234 1524 330 123 29 chr9 976431 977418 -141294026 + L3 LINE CR1 355 1433 -144 2320 98 3 0 chr9 977737 978032 -141293412 - AluSp SINE Alu -17 296 1 1291 159 89 63 chr9 978039 978177 -141293267 - AluJo SINE Alu -16 296 163 195 0 27 54 chr9 978177 978214 -141293230 + (TTTTA)n Simple_repeat Simple_repeat 2 37 0 15724 91 5 11 chr9 978221 981107 -141290337 - L1PA7 LINE L1 -13 6141 3268 2151 134 0 0 chr9 981107 981414 -141290030 - AluSc SINE Alu -1 308 2 15724 91 5 11 chr9 981414 981582 -141289862 - L1PA7 LINE L1 -2886 3268 3100 1291 159 89 63 chr9 981582 981705 -141289739 - AluJo SINE Alu -154 158 20 2216 123 21 39 chr9 981724 982107 -141289337 - Tigger2a DNA MER2_type -58 376 1 1881 175 46 9 chr9 982152 982477 -141288967 - MER1B DNA MER1_type 0 337 1 191 265 15 44 chr9 983384 983452 -141287992 - L2 LINE L2 0 3313 3248 1249 199 0 5 chr9 983507 983718 -141287726 + AluJo SINE Alu 84 293 -19 729 261 97 39 chr9 983924 984307 -141287137 + MLT1J LTR MaLR 6 410 -101 2338 135 103 97 chr9 984358 985018 -141286426 - MER4A LTR ERV1 0 664 1 657 281 63 28 chr9 985572 985825 -141285619 - MIR SINE MIR 0 262 1 534 132 0 0 chr9 986367 986443 -141285001 - AluS SINE Alu -13 297 222 1030 120 7 0 chr9 986443 986593 -141284851 - AluJb SINE Alu -161 151 1 2330 78 17 0 chr9 986602 986895 -141284549 - AluY SINE Alu -13 298 1 2408 85 13 3 chr9 986910 987216 -141284228 - AluY SINE Alu 0 311 3 30 0 0 78 chr9 987645 987675 -141283769 + AT_rich Low_complexity Low_complexity 1 25 -34 1999 142 0 13 chr9 987675 987977 -141283467 - AluSx SINE Alu -14 298 1 30 0 0 78 chr9 987977 988010 -141283434 + AT_rich Low_complexity Low_complexity 25 59 0 2293 94 3 10 chr9 988081 988378 -141283066 - AluSg SINE Alu -15 295 1 720 217 39 10 chr9 990442 990649 -141280795 - L1MB3 LINE L1 -3 6180 5968 304 271 141 40 chr9 990814 990974 -141280470 - L1ME LINE L1 -545 5579 5397 237 322 22 11 chr9 990977 991157 -141280287 - L1ME LINE L1 -750 5396 5215 1884 149 4 0 chr9 991369 991650 -141279794 - AluJo SINE Alu -30 282 1 751 297 119 33 chr9 991650 992740 -141278704 - L1ME LINE L1 -1089 5057 3874 669 249 94 26 chr9 992996 993229 -141278215 - MIR SINE MIR -13 249 1 1209 211 39 24 chr9 993343 993680 -141277764 + L1MC4 LINE L1 6806 7147 -895 801 234 85 60 chr9 993832 994267 -141277177 + L1MC4 LINE L1 7587 8032 -10 1268 124 119 0 chr9 994328 994529 -141276915 + AluJo SINE Alu 87 311 -1 260 62 42 0 chr9 995113 995161 -141276283 - L1MB3 LINE L1 -7 6176 6127 894 188 42 16 chr9 995170 995362 -141276082 + Tigger2 DNA MER2_type 1 197 -2521 198 217 96 36 chr9 995802 995885 -141275559 - MIR3 SINE MIR -34 174 87 228 207 69 0 chr9 997166 997224 -141274220 + U6 snRNA snRNA 1 62 -45 180 77 0 0 chr9 997458 997484 -141273960 + (CAAAA)n Simple_repeat Simple_repeat 3 28 0 25 0 0 0 chr9 997915 997940 -141273504 + AT_rich Low_complexity Low_complexity 1 25 0 207 69 0 0 chr9 998731 998760 -141272684 + (TTTTA)n Simple_repeat Simple_repeat 2 30 0 227 255 0 64 chr9 998828 998922 -141272522 + T-rich Low_complexity Low_complexity 5 92 0 203 77 0 26 chr9 999174 999213 -141272231 + (CAA)n Simple_repeat Simple_repeat 2 39 0 679 167 0 24 chr9 1001544 1001670 -141269774 - AluJb SINE Alu -22 290 168 435 153 28 0 chr9 1051690 1051762 -141219682 - AluJ/FLAM SINE Alu -238 74 1 329 299 84 24 chr9 1051762 1051929 -141219515 + L2 LINE L2 1945 2121 -1193 202 191 44 103 chr9 1051919 1051987 -141219457 + MER5B DNA MER1_type 9 72 -106 * 319 296 87 0 chr9 1051975 1052090 -141219354 + L2 LINE L2 2250 2374 -940 3930 156 21 0 chr9 1052497 1053207 -141218237 - L1MA7 LINE L1 -10 6485 5761 1345 108 36 115 chr9 1053207 1053486 -141217958 - Tigger7 DNA MER2_type -1 2486 2230 11696 166 33 18 chr9 1053520 1053756 -141217688 - L1MA7 LINE L1 -728 5767 5536 212 77 26 0 chr9 1053756 1053795 -141217649 + (TTTTA)n Simple_repeat Simple_repeat 1 40 0 6528 34 12 1 chr9 1053796 1055322 -141216122 - L1PA5 LINE L1 -13 6141 4547 11696 166 33 18 chr9 1055322 1057572 -141213872 - L1MA7 LINE L1 -959 5536 3236 2535 11 0 0 chr9 1057572 1057848 -141213596 - AluYa5 SINE Alu 0 311 36 11696 166 33 18 chr9 1057848 1057955 -141213489 - L1MA7 LINE L1 -3259 3236 3132 3890 262 30 33 chr9 1058292 1059960 -141211484 - L1MA7 LINE L1 -3213 3137 1466 1789 176 7 0 chr9 1059960 1060255 -141211189 - AluSx SINE Alu -15 297 1 3890 262 30 33 chr9 1060255 1060835 -141210609 - L1MA7 LINE L1 -4884 1466 1329 2035 143 0 29 chr9 1060835 1061143 -141210301 - AluSx SINE Alu -11 301 3 3890 262 30 33 chr9 1061143 1061872 -141209572 - L1MA7 LINE L1 -5021 1329 599 3192 244 9 23 chr9 1061849 1061934 -141209510 - L1MA7 LINE L1 -5543 738 653 * 2422 70 0 19 chr9 1061934 1062246 -141209198 + AluY SINE Alu 1 306 -5 3192 244 9 23 chr9 1062246 1062907 -141208537 - L1MA7 LINE L1 -5628 653 2 200 205 0 0 chr9 1062977 1063016 -141208428 + (TG)n Simple_repeat Simple_repeat 2 40 0 241 204 0 20 chr9 1063017 1063066 -141208378 - L1MA7 LINE L1 -6091 190 143 764 309 148 26 chr9 1063095 1063623 -141207821 - L2 LINE L2 -949 2365 1774 314 309 71 52 chr9 1063677 1063887 -141207557 + L1ME LINE L1 51 264 -5855 1217 301 26 25 chr9 1064305 1065086 -141206358 + L1ME LINE L1 742 1564 -4746 3623 163 34 34 chr9 1065110 1065724 -141205720 - L1MB1 LINE L1 -225 5943 5330 2188 108 0 3 chr9 1065724 1066021 -141205423 - AluSg SINE Alu -14 296 1 3623 163 34 34 chr9 1066021 1066880 -141204564 - L1MB1 LINE L1 -838 5330 3734 20141 49 3 7 chr9 1067026 1067672 -141203772 + L1PA5 LINE L1 2562 3209 -2945 2377 81 0 0 chr9 1067672 1067968 -141203476 - AluY SINE Alu -15 296 1 20141 49 3 7 chr9 1067968 1070917 -141200527 + L1PA5 LINE L1 3209 6153 -1 254 274 67 12 chr9 1070972 1071136 -141200308 + L1M4 LINE L1 3284 3456 -2690 * 285 353 55 0 chr9 1071112 1071330 -141200114 + L1M4 LINE L1 3382 3611 -2535 1062 282 78 32 chr9 1073071 1073325 -141198119 + L1M4 LINE L1 3625 3866 -2280 2289 104 0 13 chr9 1073325 1073642 -141197802 + AluSq SINE Alu 1 313 0 1062 282 78 32 chr9 1073642 1074097 -141197347 + L1M4 LINE L1 3866 4366 -1780 428 238 37 18 chr9 1074203 1074367 -141197077 - L1M4 LINE L1 -2107 4039 3873 646 277 140 15 chr9 1074371 1074829 -141196615 + L1M4 LINE L1 4510 5024 -1122 1268 194 4 9 chr9 1075010 1075242 -141196202 + MER8 DNA MER2_type 1 231 -8 274 302 53 36 chr9 1075616 1075841 -141195603 - HAL1 LINE L1 -846 1661 1433 351 113 0 0 chr9 1076611 1076664 -141194780 + (CA)n Simple_repeat Simple_repeat 1 53 0 223 254 14 0 chr9 1077070 1077141 -141194303 + (CA)n Simple_repeat Simple_repeat 1 72 0 986 215 24 0 chr9 1077852 1078061 -141193383 - MER58A DNA MER1_type 0 224 11 354 45 0 0 chr9 1079653 1079697 -141191747 + (TTTA)n Simple_repeat Simple_repeat 2 45 0 901 174 0 0 chr9 1079707 1079845 -141191599 - FRAM SINE Alu -38 138 1 419 292 65 53 chr9 1080946 1081343 -141190101 + MLT1J LTR MaLR 79 480 -31 388 223 10 29 chr9 1081375 1081478 -141189966 + MIR SINE MIR 86 186 -76 411 296 0 9 chr9 1081636 1081751 -141189693 + MER81 DNA DNA 1 114 0 242 310 0 0 chr9 1081759 1081830 -141189614 + MER81 DNA DNA 44 114 0 303 297 83 48 chr9 1083684 1083829 -141187615 + MIR SINE MIR 110 259 -3 234 375 75 25 chr9 1084359 1084519 -141186925 - L2 LINE L2 -222 3050 2883 306 182 0 0 chr9 1084653 1084719 -141186725 + CT-rich Low_complexity Low_complexity 1 66 0 695 162 7 0 chr9 1084884 1085026 -141186418 + CT-rich Low_complexity Low_complexity 2 144 0 300 333 8 33 chr9 1085548 1085668 -141185776 - MIR SINE MIR -134 128 12 1510 224 259 23 chr9 1085886 1086414 -141185030 + MER82 DNA MER2_type 1 653 0 392 246 272 15 chr9 1086417 1086612 -141184832 - MIR SINE MIR -10 252 8 223 332 82 0 chr9 1086617 1086718 -141184726 - MIR SINE MIR -77 131 22 309 200 66 0 chr9 1087246 1087335 -141184109 + L1MC/D LINE L1 5715 5808 -313 430 283 61 20 chr9 1087649 1087847 -141183597 - L1MDa LINE L1 -3949 2591 2386 744 261 106 11 chr9 1088032 1088381 -141183063 - L1MDa LINE L1 -4573 2148 1767 497 345 133 15 chr9 1088587 1088926 -141182518 + L1MEd LINE L1 472 850 -5269 204 202 0 36 chr9 1089628 1089712 -141181732 + GA-rich Low_complexity Low_complexity 1 81 0 270 303 18 36 chr9 1090064 1090229 -141181215 - L2 LINE L2 -224 3048 2887 282 29 0 0 chr9 1091984 1092019 -141179425 + (TG)n Simple_repeat Simple_repeat 1 35 0 272 145 290 0 chr9 1095189 1095251 -141176193 + MADE1 DNA Mariner 1 80 0 890 201 48 0 chr9 1095417 1095606 -141175838 + MER58 DNA MER1_type 4 201 -2219 2007 151 6 10 chr9 1095606 1095917 -141175527 + AluJb SINE Alu 1 310 -2 21 0 0 0 chr9 1096283 1096304 -141175140 + AT_rich Low_complexity Low_complexity 1 21 0 809 259 59 4 chr9 1096368 1096607 -141174837 - L1ME1 LINE L1 -8 6158 5907 21 0 0 0 chr9 1096823 1096844 -141174600 + AT_rich Low_complexity Low_complexity 1 21 0 4179 85 51 22 chr9 1098665 1099290 -141172154 + L1PA11 LINE L1 5529 6171 -3 216 0 0 0 chr9 1099880 1099904 -141171540 + (T)n Simple_repeat Simple_repeat 1 24 0 429 275 129 23 chr9 1100749 1100920 -141170524 - MER5A DNA MER1_type 0 189 1 323 246 32 24 chr9 1101129 1101255 -141170189 - L1ME4a LINE L1 -17 6104 5978 250 260 41 24 chr9 1101687 1101810 -141169634 - LTR67 LTR ERVL 0 557 433 635 243 55 141 chr9 1101946 1101986 -141169458 - L2 LINE L2 0 3313 3271 2477 146 50 2 chr9 1101986 1102405 -141169039 - L1PA16 LINE L1 -11 6155 5717 635 243 55 141 chr9 1102405 1102767 -141168677 - L2 LINE L2 -42 3271 2946 * 1191 223 208 29 chr9 1102754 1102798 -141168646 - L2 LINE L2 -581 2733 2698 2220 84 3 17 chr9 1102798 1103095 -141168349 + AluY SINE Alu 1 293 -18 1191 223 208 29 chr9 1103095 1103576 -141167868 - L2 LINE L2 -616 2698 2061 249 375 77 0 chr9 1103973 1104077 -141167367 + L2 LINE L2 3149 3260 -12 649 184 18 9 chr9 1104096 1104210 -141167234 - FLAM_A SINE Alu -17 116 2 1322 283 109 13 chr9 1104295 1104829 -141166615 - MLT1K LTR MaLR -2 586 2 22 35 0 0 chr9 1106308 1106337 -141165107 + AT_rich Low_complexity Low_complexity 1 29 0 359 155 0 28 chr9 1106337 1106408 -141165036 + Charlie5 DNA MER1_type 2233 2301 -311 672 142 9 9 chr9 1106417 1106530 -141164914 - L1MC1 LINE L1 -5 6328 6216 12333 95 10 10 chr9 1106530 1108375 -141163069 - L1P LINE L1 -4301 1845 1 2450 142 11 47 chr9 1108374 1108847 -141162597 - L1MC1 LINE L1 -104 6229 5774 * 267 322 47 53 chr9 1109099 1109270 -141162174 + MIR SINE MIR 20 189 -73 450 127 0 0 chr9 1109316 1109387 -141162057 + (TTCC)n Simple_repeat Simple_repeat 1 71 0 2009 138 17 0 chr9 1109387 1109678 -141161766 - AluSx SINE Alu -16 296 1 41119 46 3 3 chr9 1110439 1113387 -141158057 - L1PA4 LINE L1 -9 6146 3200 2371 86 3 0 chr9 1113387 1113688 -141157756 + AluY SINE Alu 1 302 -9 41119 46 3 3 chr9 1113688 1116881 -141154563 - L1PA4 LINE L1 -2955 3200 3 207 292 15 0 chr9 1116931 1116996 -141154448 + L2 LINE L2 3184 3249 -64 271 274 0 0 chr9 1117463 1117547 -141153897 + MER103 DNA DNA 80 163 -3 2287 95 0 25 chr9 1117750 1118066 -141153378 + AluSx SINE Alu 1 308 -4 608 278 99 9 chr9 1118585 1118797 -141152647 - MIR SINE MIR -18 244 14 198 103 0 0 chr9 1118817 1118846 -141152598 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 230 118 0 0 chr9 1119025 1119059 -141152385 + Charlie8 DNA MER1_type 2374 2407 -10 323 333 21 0 chr9 1119226 1119322 -141152122 - L3 LINE CR1 -54 1523 1426 300 376 68 14 chr9 1119553 1119774 -141151670 - L3 LINE CR1 -480 1097 865 687 256 23 6 chr9 1120880 1121056 -141150388 + MIR SINE MIR 13 191 -71 356 266 7 65 chr9 1122774 1122928 -141148516 + L1ME4a LINE L1 5571 5715 -406 237 75 25 25 chr9 1122991 1123031 -141148413 + L1ME4a LINE L1 5725 5764 -357 301 312 27 32 chr9 1123057 1123243 -141148201 + L1ME4a LINE L1 5861 6045 -76 368 314 50 0 chr9 1124746 1124867 -141146577 - MIR3 SINE MIR -41 167 41 1917 180 0 0 chr9 1125514 1125819 -141145625 - AluJo SINE Alu -7 305 1 313 234 49 12 chr9 1126213 1126318 -141145126 - MIR SINE MIR -79 129 20 1152 153 0 0 chr9 1126563 1126739 -141144705 + L1PA16 LINE L1 5980 6155 -11 486 259 94 18 chr9 1126764 1126934 -141144510 + MIR SINE MIR 59 241 -21 262 318 116 8 chr9 1127168 1127297 -141144147 - MIR SINE MIR -71 191 49 312 320 17 10 chr9 1128053 1128225 -141143219 + GA-rich Low_complexity Low_complexity 2 293 0 653 281 69 16 chr9 1129775 1130081 -141141363 - LTR33 LTR ERVL -20 501 180 754 22 0 0 chr9 1130081 1130172 -141141272 - L1PA5 LINE L1 -1322 4824 4734 7649 51 0 23 chr9 1130172 1131517 -141139927 + L1PA5 LINE L1 4831 6154 0 580 214 115 50 chr9 1131518 1131700 -141139744 - LTR33 LTR ERVL -327 194 1 882 133 0 8 chr9 1133375 1133503 -141137941 + AluJb SINE Alu 1 127 -185 293 296 125 6 chr9 1134520 1134696 -141136748 - L1ME LINE L1 -531 5590 5394 558 108 26 25 chr9 1134924 1135115 -141136329 - L1MA4A LINE L1 -24 6279 6028 288 277 40 0 chr9 1135348 1135449 -141135995 - LTR67 LTR ERVL -2 555 451 2742 146 5 34 chr9 1135835 1136279 -141135165 - Tigger2a DNA MER2_type -2 432 2 388 297 55 25 chr9 1136358 1136769 -141134675 - L1ME LINE L1 -1445 4701 4274 25 75 0 0 chr9 1138809 1138862 -141132582 + AT_rich Low_complexity Low_complexity 1 53 0 1227 269 63 41 chr9 1140041 1140361 -141131083 - LTR33 LTR ERVL -2 519 184 195 42 0 0 chr9 1140361 1140385 -141131059 + (TAAA)n Simple_repeat Simple_repeat 2 25 0 1227 269 63 41 chr9 1140385 1140525 -141130919 - LTR33 LTR ERVL -337 184 49 1448 175 126 7 chr9 1141068 1141337 -141130107 - AluJo SINE Alu -1 301 1 477 321 134 13 chr9 1141472 1141696 -141129748 - MIR SINE MIR -1 261 11 22 0 0 0 chr9 1141807 1141829 -141129615 + AT_rich Low_complexity Low_complexity 1 22 0 1853 167 49 71 chr9 1142495 1142962 -141128482 - LTR16A1 LTR ERVL 0 457 1 1834 213 3 42 chr9 1142985 1143365 -141128079 + MLT1A1 LTR MaLR 1 365 0 227 269 30 15 chr9 1143465 1143532 -141127912 - MER112 DNA MER1_type -189 71 4 2024 123 0 7 chr9 1144228 1144544 -141126900 - AluSx SINE Alu 0 314 1 43715 34 23 1 chr9 1144594 1150615 -141120829 + L1PA2 LINE L1 1 6155 0 189 74 0 0 chr9 1150643 1150670 -141120774 + (A)n Simple_repeat Simple_repeat 1 27 0 734 279 169 24 chr9 1150673 1150804 -141120640 + L1ME3A LINE L1 4015 4126 -2020 210 91 0 0 chr9 1150804 1150837 -141120607 + (CAAAA)n Simple_repeat Simple_repeat 3 35 0 734 279 169 24 chr9 1150837 1151450 -141119994 + L1ME3A LINE L1 4126 4867 -1279 528 272 36 15 chr9 1151534 1151729 -141119715 + L1ME3A LINE L1 5749 5947 -223 273 249 85 58 chr9 1151802 1151991 -141119453 + L1ME3A LINE L1 5963 6156 -14 480 190 0 0 chr9 1154033 1154112 -141117332 - FLAM_A SINE Alu -43 99 21 658 276 117 26 chr9 1154194 1154545 -141116899 - L1ME4a LINE L1 -218 5903 5521 22 0 0 0 chr9 1154593 1154615 -141116829 + AT_rich Low_complexity Low_complexity 1 22 0 404 260 164 71 chr9 1154963 1155509 -141115935 - L1ME4a LINE L1 -34 6087 5462 1775 170 0 16 chr9 1155509 1155826 -141115618 - AluJb SINE Alu 0 312 1 404 260 164 71 chr9 1155826 1156001 -141115443 - L1ME4a LINE L1 -659 5462 5305 21 0 0 0 chr9 1156314 1156335 -141115109 + AT_rich Low_complexity Low_complexity 1 21 0 392 289 133 8 chr9 1156633 1156761 -141114683 + MLT1J LTR MaLR 9 152 -359 593 231 8 0 chr9 1156860 1156977 -141114467 + LTR16A1 LTR ERVL 3 120 -337 334 278 44 0 chr9 1157013 1157103 -141114341 + MLT1J LTR MaLR 292 385 -126 2591 187 18 66 chr9 1157374 1157533 -141113911 - LTR27 LTR ERV1 0 636 471 1961 168 60 26 chr9 1157533 1157884 -141113560 - THE1B LTR MaLR -1 363 1 2591 187 18 66 chr9 1157884 1158391 -141113053 - LTR27 LTR ERV1 -165 471 2 224 264 36 45 chr9 1158399 1158509 -141112935 + MIR SINE MIR 100 208 -54 409 296 41 21 chr9 1159004 1159208 -141112236 - ERVL LTR ERVL -1923 3562 3357 255 323 40 0 chr9 1159362 1159461 -141111983 - ERVL LTR ERVL -2584 3180 3078 1059 232 147 4 chr9 1159538 1159810 -141111634 + LTR16C LTR ERVL 79 389 -102 312 235 0 49 chr9 1159835 1159937 -141111507 - L1MC4a LINE L1 -1860 5948 5852 627 125 0 0 chr9 1159969 1160065 -141111379 - L1PA16 LINE L1 0 6166 6071 1018 166 11 6 chr9 1160130 1160311 -141111133 - L1PA15 LINE L1 -100 6065 5884 300 191 16 0 chr9 1160311 1160374 -141111070 + LTR16C LTR ERVL 428 491 0 987 310 82 43 chr9 1160390 1161566 -141109878 - ERVL LTR ERVL -2462 3023 1787 2011 136 10 3 chr9 1161641 1161935 -141109509 - AluSg SINE Alu -14 296 1 1309 180 18 9 chr9 1162623 1162845 -141108599 + MSTB1 LTR MaLR 5 228 -204 529 299 48 11 chr9 1162849 1163036 -141108408 - MIR SINE MIR -19 243 50 459 343 94 9 chr9 1163493 1163726 -141107718 + MIR SINE MIR 10 262 0 2083 130 10 0 chr9 1164627 1164926 -141106518 + AluSq SINE Alu 1 302 -11 24 32 0 0 chr9 1164989 1165020 -141106424 + AT_rich Low_complexity Low_complexity 1 31 0 2360 115 138 26 chr9 1165445 1165829 -141105615 + MSTC LTR MaLR 2 428 0 421 294 39 39 chr9 1165911 1166091 -141105353 + MLT1J LTR MaLR 1 180 -331 2850 49 0 0 chr9 1166143 1166508 -141104936 + L1PA5 LINE L1 5812 6176 0 276 202 83 58 chr9 1166598 1166751 -141104693 + MLT1J LTR MaLR 403 599 -16 2073 171 11 22 chr9 1166865 1167233 -141104211 + MLT1A1 LTR MaLR 1 364 -1 186 343 0 0 chr9 1168267 1168334 -141103110 + MIR SINE MIR 182 248 -14 365 278 28 0 chr9 1168566 1168674 -141102770 + MIR SINE MIR 3 113 -149 243 166 26 0 chr9 1168677 1168778 -141102666 - L1P5 LINE L1 -446 5705 5591 283 287 160 7 chr9 1168778 1168928 -141102516 + MIR SINE MIR 90 262 0 207 0 0 0 chr9 1169838 1169861 -141101583 + (TG)n Simple_repeat Simple_repeat 2 24 0 33 56 0 0 chr9 1169861 1169915 -141101529 + AT_rich Low_complexity Low_complexity 1 54 0 452 72 14 0 chr9 1169916 1169985 -141101459 + (TA)n Simple_repeat Simple_repeat 1 70 0 292 292 36 105 chr9 1171609 1171828 -141099616 + MIR SINE MIR 48 251 -11 391 326 62 26 chr9 1171841 1172068 -141099376 + MIR SINE MIR 18 252 -10 228 233 0 0 chr9 1172717 1172760 -141098684 + polypurine Low_complexity Low_complexity 2 44 0 485 267 2 42 chr9 1173415 1173558 -141097886 + MIR SINE MIR 53 190 -68 507 246 266 10 chr9 1175242 1175445 -141095999 + MIR SINE MIR 3 257 -5 864 221 57 12 chr9 1175815 1176059 -141095385 - L1ME2 LINE L1 -199 5965 5711 304 281 0 12 chr9 1176915 1176997 -141094447 + MER81 DNA DNA 17 97 -17 291 218 173 64 chr9 1177210 1177320 -141094124 - MIR3 SINE MIR -47 161 40 5428 142 30 25 chr9 1177392 1179088 -141092356 + L1MA4 LINE L1 4563 6281 -19 218 273 18 0 chr9 1179127 1179182 -141092262 - MER5A DNA MER1_type -98 91 36 301 275 171 31 chr9 1183356 1183510 -141087934 + MIR SINE MIR 5 193 -69 366 23 0 0 chr9 1183510 1183553 -141087891 + (TG)n Simple_repeat Simple_repeat 2 44 0 301 275 171 31 chr9 1183553 1183591 -141087853 + MIR SINE MIR 193 224 -38 241 122 24 0 chr9 1183637 1183678 -141087766 - L2 LINE L2 -4 3309 3268 425 264 86 6 chr9 1183679 1183842 -141087602 - L2 LINE L2 -1907 1407 1232 282 239 54 33 chr9 1184361 1184453 -141086991 - MLT1H LTR MaLR -16 533 433 383 311 146 0 chr9 1185237 1185388 -141086056 - L3 LINE CR1 -8 1569 1397 210 239 103 65 chr9 1186502 1186657 -141084787 - L3 LINE CR1 -381 1196 1036 296 24 0 24 chr9 1187733 1187775 -141083669 + (TA)n Simple_repeat Simple_repeat 2 42 0 764 332 118 13 chr9 1187778 1188488 -141082956 + ERVL LTR ERVL 3305 4089 -1675 283 341 90 20 chr9 1188517 1188860 -141082584 + ERVL LTR ERVL 4296 4662 -992 495 347 46 28 chr9 1188906 1189364 -141082080 + ERVL LTR ERVL 4770 5235 -529 841 251 132 30 chr9 1189667 1190070 -141081374 + LTR16A1 LTR ERVL 14 457 0 263 267 11 0 chr9 1190205 1190295 -141081149 - LTR16A1 LTR ERVL -339 118 28 257 233 0 12 chr9 1190743 1190829 -141080615 + CT-rich Low_complexity Low_complexity 2 86 0 368 300 130 34 chr9 1192610 1192838 -141078606 - MIR SINE MIR 0 262 3 2168 125 0 0 chr9 1192884 1193173 -141078271 - AluSx SINE Alu -23 289 1 224 402 39 0 chr9 1193325 1193427 -141078017 - L2 LINE L2 -16 3256 3151 215 100 0 25 chr9 1195261 1195301 -141076143 + (TTCA)n Simple_repeat Simple_repeat 1 39 0 4608 170 6 30 chr9 1195539 1196803 -141074641 + L1MB3 LINE L1 4903 6138 -45 1226 188 62 62 chr9 1196803 1196879 -141074565 + AluJo SINE Alu 44 119 -193 180 0 0 0 chr9 1196879 1196899 -141074545 + (TAAA)n Simple_repeat Simple_repeat 4 23 0 1226 188 62 62 chr9 1196899 1197078 -141074366 + AluJo SINE Alu 118 299 -13 331 131 0 0 chr9 1197078 1197139 -141074305 + L1MB2 LINE L1 6111 6171 0 1001 237 113 47 chr9 1197941 1198447 -141072997 - L1ME4a LINE L1 -17 6104 5566 317 289 26 46 chr9 1198621 1198773 -141072671 - L1ME4a LINE L1 -786 5360 5212 1169 167 8 71 chr9 1198848 1199100 -141072344 + MER46A DNA MER2_type 1 236 0 1233 160 60 14 chr9 1199240 1199299 -141072145 - L1MA7 LINE L1 -6 6285 6230 318 26 0 0 chr9 1199299 1199338 -141072106 + (CA)n Simple_repeat Simple_repeat 2 40 0 1233 160 60 14 chr9 1199338 1199559 -141071885 - L1MA7 LINE L1 -61 6230 5992 455 265 87 99 chr9 1199988 1200157 -141071287 - HAL1 LINE L1 -1 2506 2336 2447 45 0 19 chr9 1200157 1200466 -141070978 - AluY SINE Alu -8 303 1 455 265 87 99 chr9 1200466 1200700 -141070744 - HAL1 LINE L1 -171 2336 2108 1914 195 29 43 chr9 1200863 1201355 -141070089 - HAL1 LINE L1 -1959 548 64 26 30 0 0 chr9 1201566 1201599 -141069845 + AT_rich Low_complexity Low_complexity 1 33 0 2381 90 0 0 chr9 1202321 1202622 -141068822 - AluY SINE Alu -10 301 1 433 301 78 41 chr9 1202720 1202939 -141068505 - MIR SINE MIR -16 246 20 241 183 14 28 chr9 1203356 1203427 -141068017 + GA-rich Low_complexity Low_complexity 2 71 0 258 321 71 18 chr9 1203536 1203648 -141067796 + L2 LINE L2 3196 3313 0 208 121 0 0 chr9 1204604 1204637 -141066807 + (CA)n Simple_repeat Simple_repeat 2 34 0 343 96 0 0 chr9 1206932 1206984 -141064460 + L1 LINE L1 5197 5248 -898 996 127 6 11 chr9 1207652 1207833 -141063611 + (TTTC)n Simple_repeat Simple_repeat 1 180 0 584 230 58 40 chr9 1208355 1208529 -141062915 + MER5B DNA MER1_type 2 178 0 261 268 16 71 chr9 1209114 1209241 -141062203 - MER5B DNA MER1_type 0 178 59 554 217 118 80 chr9 1209282 1209661 -141061783 + L1MC4a LINE L1 5523 5823 -298 243 309 18 36 chr9 1209681 1209791 -141061653 + (CATATA)n Simple_repeat Simple_repeat 3 110 0 1516 206 22 43 chr9 1210066 1210435 -141061009 + MLT1A1 LTR MaLR 3 363 -2 273 292 75 50 chr9 1210708 1210869 -141060575 + MIR SINE MIR 70 234 -28 29 78 0 0 chr9 1211502 1211566 -141059878 + AT_rich Low_complexity Low_complexity 1 64 0 1224 189 45 89 chr9 1212040 1212422 -141059022 - MLT1A1 LTR MaLR 0 365 1 694 300 27 5 chr9 1212595 1212815 -141058629 - MIR SINE MIR -13 249 25 1898 161 6 3 chr9 1212975 1213286 -141058158 - AluJb SINE Alu 0 312 1 234 237 34 0 chr9 1216015 1216074 -141055370 + MIR3 SINE MIR 97 157 -51 463 175 88 0 chr9 1216160 1216274 -141055170 - Charlie8 DNA MER1_type -2246 171 48 536 265 21 48 chr9 1216283 1216472 -141054972 + L1MEc LINE L1 36 219 -6177 1932 152 7 0 chr9 1216515 1216811 -141054633 + AluSx SINE Alu 1 298 -14 5646 147 27 6 chr9 1217012 1218910 -141052534 - L1MA8 LINE L1 -137 6154 4213 1171 280 71 32 chr9 1218985 1219581 -141051863 + L2 LINE L2 2694 3313 0 15356 51 2 1 chr9 1220444 1223156 -141048288 - L1PA8 LINE L1 -6 6166 3441 10780 83 21 1 chr9 1223156 1224746 -141046698 + L1P LINE L1 2856 4478 -1668 250 273 281 7 chr9 1224848 1224987 -141046457 - MIR SINE MIR -27 235 59 183 323 71 0 chr9 1225092 1225191 -141046253 - L3b LINE CR1 -242 1341 1236 227 299 0 52 chr9 1227330 1227407 -141044037 - L2 LINE L2 0 3313 3241 1803 150 58 0 chr9 1228985 1229278 -141042166 - AluSx SINE Alu -2 310 1 535 330 42 0 chr9 1229304 1229495 -141041949 - MIR SINE MIR -8 254 56 503 256 173 0 chr9 1230336 1230469 -141040975 + MER5A DNA MER1_type 32 187 -2 2133 127 0 0 chr9 1230944 1231227 -141040217 + AluSx SINE Alu 3 285 -27 270 308 175 21 chr9 1231569 1231712 -141039732 - MIR SINE MIR -17 245 81 432 308 83 0 chr9 1231748 1231868 -141039576 - MIR SINE MIR -62 146 17 302 325 25 44 chr9 1232880 1233040 -141038404 - MIR SINE MIR 0 262 106 487 210 70 38 chr9 1233238 1233395 -141038049 - MER112 DNA MER1_type -6 254 93 42 15 0 44 chr9 1233397 1233465 -141037979 + AT_rich Low_complexity Low_complexity 1 65 0 338 183 61 12 chr9 1233465 1233547 -141037897 - MER112 DNA MER1_type -174 86 1 272 314 97 57 chr9 1233663 1234035 -141037409 - L2 LINE L2 -412 2902 2516 470 276 37 22 chr9 1235814 1235948 -141035496 - L2 LINE L2 -1 3271 3136 195 316 76 59 chr9 1236236 1236473 -141034971 - L2 LINE L2 -485 2829 2589 259 266 141 0 chr9 1236481 1236609 -141034835 - MER117 DNA MER1_type -1 196 51 204 271 121 72 chr9 1236714 1236921 -141034523 - L2 LINE L2 -791 2523 2307 190 238 57 76 chr9 1237008 1237113 -141034331 - L2 LINE L2 -1017 2297 2195 478 206 46 69 chr9 1237984 1238523 -141032921 + L1ME1 LINE L1 5929 6099 -67 1929 148 107 3 chr9 1238137 1238502 -141032942 - MER57A LTR ERV1 0 403 1 319 152 22 196 chr9 1238502 1238619 -141032825 + L1MA10 LINE L1 6190 6326 -8 441 54 0 0 chr9 1238623 1238679 -141032765 + (CA)n Simple_repeat Simple_repeat 2 57 0 540 313 19 6 chr9 1240621 1240781 -141030663 - MIR SINE MIR -23 239 78 515 239 67 35 chr9 1240915 1241170 -141030274 + L1ME3A LINE L1 4774 5036 -1110 719 279 146 18 chr9 1241343 1241952 -141029492 + L1ME3A LINE L1 5258 5944 -226 312 304 87 36 chr9 1241997 1242135 -141029309 + L1ME3A LINE L1 5953 6097 -73 197 317 10 109 chr9 1243529 1243630 -141027814 - MIR SINE MIR -97 111 21 238 150 0 0 chr9 1243691 1243731 -141027713 - MLT1B LTR MaLR -2 388 349 889 178 28 134 chr9 1243757 1244224 -141027220 - MLT1B LTR MaLR -23 444 1 343 307 69 35 chr9 1244793 1245083 -141026361 + LTR16C LTR ERVL 192 491 0 335 302 86 17 chr9 1245170 1245286 -141026158 - L2 LINE L2 -8 3264 3141 979 248 94 46 chr9 1246488 1246923 -141024521 + MLT1C LTR MaLR 4 459 -8 400 168 0 161 chr9 1247738 1247756 -141023688 + L1M2 LINE L1 5407 5426 -865 2185 117 3 13 chr9 1247756 1248090 -141023354 + AluSx SINE Alu 1 312 0 400 168 0 161 chr9 1248090 1248116 -141023328 + L1M2 LINE L1 5426 5455 -836 1852 156 12 23 chr9 1248116 1248462 -141022982 + L1PB4 LINE L1 5815 6156 0 400 168 0 161 chr9 1248462 1248553 -141022891 + L1M2 LINE L1 5455 5521 -770 502 245 129 31 chr9 1248574 1248737 -141022707 - L2 LINE L2 0 3313 3135 191 382 83 0 chr9 1248881 1249025 -141022419 + MIR3 SINE MIR 38 193 -15 1566 228 52 29 chr9 1249183 1249668 -141021776 + MLT1D LTR MaLR 6 386 -4 303 212 71 12 chr9 1249670 1249755 -141021689 + MLT1I LTR MaLR 61 150 -259 2126 185 15 37 chr9 1249965 1250429 -141021015 - MLT2B1 LTR ERVL -64 456 3 248 281 53 35 chr9 1250434 1250548 -141020896 + MLT1I LTR MaLR 256 371 -38 248 288 91 23 chr9 1250750 1250882 -141020562 + MER103 DNA DNA 2 142 -24 891 250 29 16 chr9 1252918 1253162 -141018282 + MLT1H1 LTR MaLR 307 553 -2 192 167 0 0 chr9 1253399 1253429 -141018015 + L2 LINE L2 3233 3262 -51 731 272 83 48 chr9 1253438 1253896 -141017548 - L2 LINE L2 -117 3196 2719 673 167 233 17 chr9 1255963 1256143 -141015301 + MER20 DNA MER1_type 1 219 0 4391 155 37 34 chr9 1256144 1257034 -141014410 - MER54A LTR ERVL -1 900 8 243 61 0 0 chr9 1257091 1257124 -141014320 + (CAAAA)n Simple_repeat Simple_repeat 1 33 0 187 316 26 26 chr9 1257206 1257282 -141014162 + L2 LINE L2 2712 2787 -527 431 297 116 7 chr9 1257400 1257555 -141013889 + MIR SINE MIR 10 181 -81 182 301 86 49 chr9 1258188 1258351 -141013093 + L2 LINE L2 2841 3009 -263 247 286 163 7 chr9 1258838 1258985 -141012459 + MIR SINE MIR 93 262 0 479 307 49 13 chr9 1259742 1259967 -141011477 - Charlie8 DNA MER1_type -2184 233 1 2196 115 36 39 chr9 1260009 1260373 -141011071 + THE1B LTR MaLR 1 363 -1 274 284 7 97 chr9 1261010 1261165 -141010279 + MLT1J LTR MaLR 136 276 -235 2327 289 42 24 chr9 1261167 1262176 -141009268 - MER69B DNA AcHobo -199 1027 1 674 321 91 19 chr9 1262478 1262952 -141008492 - MLT1G1 LTR MaLR -13 582 75 196 244 0 0 chr9 1263059 1263100 -141008344 + MIR SINE MIR 216 256 -6 1761 179 3 38 chr9 1263192 1263511 -141007933 + AluJo SINE Alu 1 308 -4 264 261 43 54 chr9 1264573 1264665 -141006779 - L3 LINE CR1 -12 1565 1475 3550 265 106 35 chr9 1266713 1266877 -141004567 - L2 LINE L2 0 3313 3162 2149 163 89 0 chr9 1266877 1267095 -141004349 - MSTA LTR MaLR 0 428 231 273 57 0 0 chr9 1267095 1267130 -141004314 + (TGGGGG)n Simple_repeat Simple_repeat 5 39 0 2149 163 89 0 chr9 1267130 1267304 -141004140 - MSTA LTR MaLR -197 231 1 3550 265 106 35 chr9 1267304 1268807 -141002637 - L2 LINE L2 -151 3162 1518 222 37 0 0 chr9 1268854 1268881 -141002563 + (TG)n Simple_repeat Simple_repeat 2 28 0 221 344 122 28 chr9 1269246 1269638 -141001806 + L2 LINE L2 2829 3257 -15 425 263 73 39 chr9 1269655 1269860 -141001584 + HAL1 LINE L1 1 212 -2295 2314 261 141 52 chr9 1269928 1270151 -141001293 + HAL1 LINE L1 602 804 -1703 1457 170 7 7 chr9 1270151 1270421 -141001023 - L1PA16 LINE L1 0 6166 5897 2314 261 141 52 chr9 1270421 1271933 -140999511 + HAL1 LINE L1 804 2491 -16 324 272 120 27 chr9 1273184 1273321 -140998123 - MIR3 SINE MIR -23 185 33 1076 316 74 20 chr9 1273829 1274316 -140997128 - LTR33 LTR ERVL -8 513 1 1741 216 48 11 chr9 1274392 1274744 -140996700 + MLT1A1 LTR MaLR 1 365 0 4343 145 2 3 chr9 1275377 1276013 -140995431 - MER41B LTR ERV1 0 635 1 473 151 151 0 chr9 1276117 1276223 -140995221 - MIR SINE MIR -85 177 56 268 290 107 30 chr9 1276303 1276434 -140995010 + MIR SINE MIR 117 257 -5 * 630 256 113 10 chr9 1276424 1276619 -140994825 + MIR SINE MIR 11 225 -37 1039 313 35 28 chr9 1276856 1277256 -140994188 + LTR16A LTR ERVL 26 428 -22 5611 301 70 57 chr9 1277268 1278905 -140992539 + HERV16 LTR ERVL 1 1830 -3166 742 181 7 29 chr9 1278905 1279043 -140992401 + FLAM_A SINE Alu 8 142 0 5611 301 70 57 chr9 1279043 1280319 -140991125 + HERV16 LTR ERVL 1830 3089 -1907 858 286 107 39 chr9 1280467 1281156 -140990288 + HERV16 LTR ERVL 3328 4063 -1701 891 350 68 29 chr9 1281493 1282367 -140989077 + HERV16 LTR ERVL 4419 5326 -328 1031 324 58 15 chr9 1282534 1282944 -140988500 + LTR16A LTR ERVL 23 450 0 331 338 60 25 chr9 1283270 1283471 -140987973 - MIR SINE MIR -26 236 29 1218 231 86 52 chr9 1285067 1285452 -140985992 + MER93a LTR ERV1 1 398 -4 656 225 96 28 chr9 1286479 1286657 -140984787 + MER58C DNA MER1_type 26 215 0 487 281 97 17 chr9 1286660 1286898 -140984546 + MIR SINE MIR 5 261 -1 365 254 21 14 chr9 1286920 1287062 -140984382 + (TA)n Simple_repeat Simple_repeat 1 143 0 216 0 0 0 chr9 1287164 1287188 -140984256 + (TC)n Simple_repeat Simple_repeat 2 25 0 * 398 25 88 0 chr9 1287187 1287267 -140984177 + (TA)n Simple_repeat Simple_repeat 1 87 0 2460 76 0 0 chr9 1288673 1288975 -140982469 + AluSc SINE Alu 1 302 -7 3498 124 24 10 chr9 1288979 1289488 -140981956 - L1PA15 LINE L1 -13 6152 5637 4307 155 65 21 chr9 1289492 1290256 -140981188 - L1MA7 LINE L1 0 6291 5485 2106 122 10 0 chr9 1290256 1290551 -140980893 - AluSp SINE Alu -13 300 3 4307 155 65 21 chr9 1290551 1290629 -140980815 - L1MA7 LINE L1 -806 5485 5412 1350 152 5 9 chr9 1290700 1290910 -140980534 + AluJb SINE Alu 86 294 -18 22 0 0 0 chr9 1290915 1290937 -140980507 + AT_rich Low_complexity Low_complexity 1 22 0 243 205 0 121 chr9 1291214 1291297 -140980147 + LTR67 LTR ERVL 468 540 -17 206 268 56 28 chr9 1291835 1291906 -140979538 + L2 LINE L2 3183 3255 -17 26 0 0 0 chr9 1292660 1292686 -140978758 + AT_rich Low_complexity Low_complexity 1 26 0 30930 114 20 57 chr9 1292736 1299139 -140972305 + L1PA8 LINE L1 12 6166 -6 1551 191 150 24 chr9 1299669 1300082 -140971362 - MLT1C LTR MaLR 0 467 3 319 308 51 51 chr9 1300526 1300682 -140970762 + MER5A DNA MER1_type 33 188 -1 5549 195 38 1 chr9 1302111 1303114 -140968330 - MER45B DNA AcHobo 0 1040 1 227 313 88 0 chr9 1303232 1303312 -140968132 + L2 LINE L2 3006 3092 -221 686 211 0 0 chr9 1303358 1303481 -140967963 - MER5A DNA MER1_type -66 123 1 359 321 60 28 chr9 1303481 1303694 -140967750 + L2 LINE L2 3094 3313 0 1771 191 38 24 chr9 1304184 1304556 -140966888 - MLT1B LTR MaLR -6 384 8 204 314 0 29 chr9 1304562 1304632 -140966812 - MER5A DNA MER1_type -103 86 19 221 56 0 28 chr9 1306935 1306971 -140964473 + (TTTTA)n Simple_repeat Simple_repeat 1 35 0 16372 31 1 6 chr9 1306971 1307744 -140963700 - L1PA3 LINE L1 -24 6131 5356 2892 10 0 0 chr9 1307744 1308054 -140963390 - AluYa5 SINE Alu -1 310 1 16372 31 1 6 chr9 1308054 1309977 -140961467 - L1PA3 LINE L1 -799 5356 3441 4538 37 0 3 chr9 1309968 1310535 -140960909 + L1PA3 LINE L1 2848 3412 -2734 * 327 322 49 63 chr9 1310777 1310920 -140960524 - L2 LINE L2 -3 3269 3129 1213 122 0 0 chr9 1311922 1312086 -140959358 + AluSg/x SINE Alu 133 296 -16 250 200 57 43 chr9 1312303 1312373 -140959071 - MIR SINE MIR -9 253 183 236 237 158 26 chr9 1312471 1312585 -140958859 + LTR33 LTR ERVL 116 244 -277 775 259 138 50 chr9 1312756 1313076 -140958368 - MLT1J LTR MaLR -102 409 62 318 276 150 8 chr9 1313162 1313289 -140958155 - MIR SINE MIR -93 169 25 260 325 43 17 chr9 1313588 1313705 -140957739 + MIR SINE MIR 16 135 -73 221 286 25 99 chr9 1315642 1315803 -140955641 + L3 LINE CR1 1139 1287 -290 199 313 71 85 chr9 1315799 1316080 -140955364 + L2 LINE L2 3023 3299 -14 * 22 0 0 0 chr9 1318164 1318186 -140953258 + AT_rich Low_complexity Low_complexity 1 22 0 331 320 67 5 chr9 1319516 1319710 -140951734 - L1MEd LINE L1 -4915 1204 999 813 164 15 0 chr9 1319717 1319851 -140951593 - FRAM SINE Alu -3 173 38 284 352 141 12 chr9 1321002 1321258 -140950186 + L2 LINE L2 2982 3270 -2 7300 40 28 0 chr9 1321544 1322857 -140948587 - L1PA4 LINE L1 0 6155 4824 12067 72 15 0 chr9 1322857 1324493 -140946951 - L1P LINE L1 -4485 1661 1 338 245 71 0 chr9 1325245 1325343 -140946101 - MIR3 SINE MIR -6 202 98 43 47 0 0 chr9 1326486 1326550 -140944894 + AT_rich Low_complexity Low_complexity 1 64 0 327 270 155 34 chr9 1327022 1327170 -140944274 + MIR SINE MIR 90 255 -7 246 182 0 0 chr9 1328434 1328478 -140942966 - MER66B LTR ERV1 -142 344 301 1885 251 45 38 chr9 1329879 1330303 -140941141 - HsTC2a DNA Tc2 -1157 743 310 1668 187 33 3 chr9 1330303 1330603 -140940841 - AluJo SINE Alu -3 309 1 1885 251 45 38 chr9 1330603 1330890 -140940554 - HsTC2a DNA Tc2 -1590 310 27 262 299 46 0 chr9 1330931 1331018 -140940426 - L2 LINE L2 -231 3041 2951 326 340 70 22 chr9 1331703 1331888 -140939556 - L2 LINE L2 -406 2908 2715 2121 125 0 0 chr9 1332358 1332654 -140938790 + AluSx SINE Alu 1 296 -16 2110 126 3 0 chr9 1332865 1333166 -140938278 - AluSc SINE Alu -7 302 1 779 249 120 34 chr9 1333275 1333508 -140937936 - MIR SINE MIR -1 261 9 187 31 62 0 chr9 1335334 1335366 -140936078 + A-rich Low_complexity Low_complexity 2 35 0 495 311 119 11 chr9 1335476 1335653 -140935791 + MIR SINE MIR 23 218 -44 2085 128 0 13 chr9 1336463 1336767 -140934677 - AluSx SINE Alu -10 302 3 2364 101 3 0 chr9 1336908 1337216 -140934228 + AluSc SINE Alu 1 309 0 530 277 42 45 chr9 1337797 1338086 -140933358 + Charlie7 DNA MER1_type 1245 1532 -1080 1000 245 61 114 chr9 1338639 1338779 -140932665 - LTR16C LTR ERVL -2 489 343 2255 98 3 0 chr9 1338779 1339075 -140932369 + AluSx SINE Alu 1 297 -15 1000 245 61 114 chr9 1339075 1339423 -140932021 - LTR16C LTR ERVL -148 343 27 978 304 122 29 chr9 1339757 1340240 -140931204 + MLT1G1 LTR MaLR 1 528 -67 417 177 124 9 chr9 1340369 1340482 -140930962 + L1MD3 LINE L1 7670 7795 -200 413 352 82 15 chr9 1340720 1340916 -140930528 - MIR SINE MIR -52 210 2 225 224 40 7 chr9 1341104 1341259 -140930185 + (TA)n Simple_repeat Simple_repeat 1 160 0 2105 189 88 24 chr9 1341397 1341951 -140929493 - L1MD3 LINE L1 -10 7985 7396 409 189 14 0 chr9 1341951 1342025 -140929419 - MLT1F1 LTR MaLR -457 110 36 2009 138 3 3 chr9 1342391 1342688 -140928756 - AluJb SINE Alu -15 297 1 236 223 53 0 chr9 1342759 1342853 -140928591 + (TA)n Simple_repeat Simple_repeat 1 99 0 465 311 53 24 chr9 1342881 1343090 -140928354 - MIR SINE MIR -1 261 47 2705 94 13 5 chr9 1343390 1343762 -140927682 - THE1C LTR MaLR 0 375 1 465 62 0 0 chr9 1344020 1344085 -140927359 + (GA)n Simple_repeat Simple_repeat 2 66 0 224 364 91 8 chr9 1346038 1346170 -140925274 + MIR3 SINE MIR 60 202 -6 203 286 76 59 chr9 1347458 1347577 -140923867 - L3 LINE CR1 -31 1546 1426 432 274 35 30 chr9 1347604 1347805 -140923639 - Charlie8 DNA MER1_type -9 2408 2207 913 239 85 96 chr9 1347851 1348299 -140923145 - Charlie8 DNA MER1_type -1973 444 2 1181 206 0 26 chr9 1348309 1348537 -140922907 + MER58A DNA MER1_type 2 223 -1 262 267 13 13 chr9 1348573 1348648 -140922796 - L3 LINE CR1 -180 1397 1323 612 327 88 22 chr9 1349042 1349494 -140921950 + L2 LINE L2 2832 3313 0 351 277 119 0 chr9 1349850 1349951 -140921493 - MIR SINE MIR -62 146 34 6506 83 3 28 chr9 1350058 1350875 -140920569 - L1PA10 LINE L1 0 6168 5332 2274 103 0 3 chr9 1350875 1351175 -140920269 - AluY SINE Alu -12 299 1 6506 83 3 28 chr9 1351175 1352278 -140919166 - L1PA10 LINE L1 -836 5332 4284 1117 154 18 0 chr9 1352285 1352454 -140918990 + AluSg/x SINE Alu 132 303 -9 909 225 22 13 chr9 1352457 1352688 -140918756 + L1ME1 LINE L1 5891 6123 -43 202 319 26 73 chr9 1352757 1352949 -140918495 - MIR SINE MIR -57 205 19 741 273 80 8 chr9 1353060 1353298 -140918146 - MIR SINE MIR 0 262 8 831 249 131 24 chr9 1353999 1354328 -140917116 - L2 LINE L2 -1 3312 2949 650 378 114 0 chr9 1354475 1354869 -140916575 - L3 LINE CR1 -1104 473 35 332 285 115 6 chr9 1354953 1355118 -140916326 - L1ME4a LINE L1 -4 6117 5935 266 247 55 0 chr9 1356019 1356092 -140915352 + L2 LINE L2 3197 3273 -40 1038 315 57 25 chr9 1356136 1356612 -140914832 - L2 LINE L2 0 3313 2823 980 235 111 60 chr9 1356609 1357022 -140914422 - L2 LINE L2 -876 2438 2005 * 241 313 107 0 chr9 1357797 1357909 -140913535 - MIR SINE MIR -70 192 69 239 222 0 0 chr9 1358582 1358645 -140912799 - LTR66 LTR ERVL -149 461 399 186 43 0 0 chr9 1358653 1358676 -140912768 + (TCTA)n Simple_repeat Simple_repeat 4 26 0 27 29 0 0 chr9 1359407 1359441 -140912003 + AT_rich Low_complexity Low_complexity 1 34 0 351 362 74 23 chr9 1360262 1360746 -140910698 - L2 LINE L2 -914 2400 1892 204 367 22 11 chr9 1361081 1361171 -140910273 + L2 LINE L2 3168 3258 -14 260 333 55 56 chr9 1361211 1361412 -140910032 - MIR SINE MIR -5 203 1 468 286 64 71 chr9 1362105 1362388 -140909056 + L2 LINE L2 2992 3272 0 470 287 6 43 chr9 1362505 1362669 -140908775 - MIR SINE MIR -40 222 65 296 188 14 0 chr9 1362748 1362817 -140908627 + CT-rich Low_complexity Low_complexity 4 73 0 262 306 41 10 chr9 1362849 1362947 -140908497 + MIR SINE MIR 54 154 -108 424 137 1 35 chr9 1363035 1363124 -140908320 - L1MC3 LINE L1 -15 7770 6238 508 261 113 54 chr9 1363127 1363330 -140908114 - MIR SINE MIR -46 216 2 1577 201 35 32 chr9 1364537 1364910 -140906534 + MLT1A2 LTR MaLR 1 374 0 21 57 0 0 chr9 1366699 1366734 -140904710 + AT_rich Low_complexity Low_complexity 1 35 0 824 295 66 25 chr9 1366824 1367503 -140903941 + HAL1b LINE L1 89 795 -553 319 212 26 26 chr9 1367580 1367693 -140903751 - HAL1b LINE L1 -341 1007 895 1310 210 95 20 chr9 1367702 1368092 -140903352 - Charlie4a DNA MER1_type -63 445 27 1449 149 74 45 chr9 1370075 1370384 -140901060 + MLT2D LTR ERVL 73 534 -20 414 0 0 0 chr9 1370397 1370443 -140901001 + (CA)n Simple_repeat Simple_repeat 1 46 0 728 282 102 50 chr9 1370744 1371262 -140900182 + L2 LINE L2 527 1071 -2243 889 199 22 0 chr9 1371782 1371960 -140899484 - MER3 DNA MER1_type -19 190 9 767 196 136 11 chr9 1371960 1372144 -140899300 + MER58C DNA MER1_type 1 207 -8 213 379 70 9 chr9 1372516 1372730 -140898714 - L2 LINE L2 -234 3038 2812 201 39 0 0 chr9 1374795 1374821 -140896623 + (TTTA)n Simple_repeat Simple_repeat 1 26 0 3071 166 35 35 chr9 1374822 1375448 -140895996 - MER73 LTR ERVL -18 626 1 3613 119 11 0 chr9 1375620 1376158 -140895286 - L1PA13 LINE L1 -56 6107 5564 2583 32 0 10 chr9 1376424 1376737 -140894707 + AluY SINE Alu 1 310 -1 303 272 174 0 chr9 1376827 1376919 -140894525 + MIR SINE MIR 126 233 -29 216 261 0 46 chr9 1377128 1377193 -140894251 + MIR SINE MIR 157 218 -44 10298 183 48 18 chr9 1377521 1380106 -140891338 - L1MA4A LINE L1 -5 6161 3654 1083 45 0 0 chr9 1380106 1380238 -140891206 - L1PA3 LINE L1 -3 6152 6021 10298 183 48 18 chr9 1380238 1380446 -140890998 - L1MA4A LINE L1 -2512 3654 3454 2006 118 37 0 chr9 1380446 1380742 -140890702 - AluSx SINE Alu -5 307 1 10298 183 48 18 chr9 1380742 1381153 -140890291 - L1MA4A LINE L1 -2712 3454 2849 2184 238 70 57 chr9 1381180 1382320 -140889124 - L1ME LINE L1 -369 5866 4676 279 100 0 0 chr9 1382320 1382360 -140889084 + U5 snRNA snRNA 3 42 -74 2184 238 70 57 chr9 1382360 1382595 -140888849 - L1ME LINE L1 -1559 4676 4446 4690 220 72 32 chr9 1382608 1384341 -140887103 - L1 LINE L1 -2659 4906 3100 2854 272 42 11 chr9 1384353 1385398 -140886046 - L1ME LINE L1 -1802 4413 3337 460 155 0 21 chr9 1386007 1386104 -140885340 - L1MA10 LINE L1 0 6334 6240 268 185 77 0 chr9 1386112 1386177 -140885267 - L1P LINE L1 -2890 3256 3187 1667 248 83 17 chr9 1386190 1386939 -140884505 - L1ME LINE L1 -3143 3072 2275 665 167 32 24 chr9 1386966 1387092 -140884352 + FLAM_C SINE Alu 10 136 -7 2285 94 0 0 chr9 1387094 1387380 -140884064 + AluSp SINE Alu 1 286 -27 1936 83 0 0 chr9 1387380 1387644 -140883800 - THE1B-int LTR MaLR -1316 264 1 2014 132 79 15 chr9 1387644 1387986 -140883458 - THE1B LTR MaLR 0 364 1 480 272 230 25 chr9 1388084 1388585 -140882859 - L1ME LINE L1 -4925 1471 1074 1912 137 20 3 chr9 1388585 1388877 -140882567 - AluSx SINE Alu -15 297 1 480 272 230 25 chr9 1388877 1389091 -140882353 - L1ME LINE L1 -5322 1074 609 1802 211 87 27 chr9 1389237 1389791 -140881653 + L1MC4 LINE L1 7443 8029 -13 346 299 35 62 chr9 1391245 1391389 -140880055 - MIR SINE MIR -108 154 15 721 330 83 29 chr9 1391460 1391942 -140879502 - L2 LINE L2 -2 3311 2804 239 211 0 19 chr9 1391991 1392043 -140879401 + L2 LINE L2 2715 2765 -549 253 364 76 0 chr9 1392616 1392734 -140878710 + L2 LINE L2 3184 3310 -3 199 234 0 117 chr9 1392743 1392820 -140878624 + MIR SINE MIR 58 125 -83 612 283 31 22 chr9 1392891 1393117 -140878327 - MIR SINE MIR -17 245 18 2226 90 6 40 chr9 1393169 1393531 -140877913 - AluY SINE Alu 0 351 1 4276 178 79 13 chr9 1393629 1394896 -140876548 - L1MA8 LINE L1 -4 6287 4936 2462 136 45 12 chr9 1395894 1396312 -140875132 + MSTB1 LTR MaLR 1 432 0 221 344 0 0 chr9 1396363 1396427 -140875017 - MIR SINE MIR -60 148 85 251 222 19 0 chr9 1396499 1396609 -140874835 + CT-rich Low_complexity Low_complexity 1 112 0 210 147 13 53 chr9 1396642 1396717 -140874727 + CT-rich Low_complexity Low_complexity 2 73 0 27 73 0 0 chr9 1396960 1397015 -140874429 + AT_rich Low_complexity Low_complexity 1 55 0 24 32 0 0 chr9 1397063 1397094 -140874350 + AT_rich Low_complexity Low_complexity 1 31 0 1253 124 21 5 chr9 1397297 1397491 -140873953 - L1PA13 LINE L1 -58 6105 5909 1386 247 92 13 chr9 1397535 1398135 -140873309 + MER114 LTR ERV 1 647 -1 598 229 52 60 chr9 1398426 1398675 -140872769 - L1MD2 LINE L1 -17 6342 6096 1196 221 56 21 chr9 1398676 1399007 -140872437 - Tigger7 DNA MER2_type 0 2491 2 1621 246 78 32 chr9 1399008 1399505 -140871939 - L1MD2 LINE L1 -263 6096 5577 1127 233 31 24 chr9 1399708 1399996 -140871448 - L1MD2 LINE L1 -651 5591 5302 2121 50 28 7 chr9 1399998 1400280 -140871164 - L1PA4 LINE L1 0 6155 5868 559 0 15 0 chr9 1400280 1400346 -140871098 + L1PA4 LINE L1 5797 5863 -291 1758 259 56 17 chr9 1400351 1401014 -140870430 - L1MD2 LINE L1 -842 5304 4616 3349 191 59 76 chr9 1401042 1402100 -140869344 - L1MB8 LINE L1 0 6178 5115 183 42 0 0 chr9 1402100 1402124 -140869320 + (TTG)n Simple_repeat Simple_repeat 3 26 0 3349 191 59 76 chr9 1402124 1402179 -140869265 - L1MB8 LINE L1 -1063 5115 5061 * 3382 200 35 15 chr9 1402175 1403364 -140868080 + L1MB5 LINE L1 4699 5953 -225 4357 152 53 13 chr9 1403364 1404158 -140867286 + LTR1B LTR ERV1 1 826 0 3382 200 35 15 chr9 1404158 1404370 -140867074 + L1MB5 LINE L1 5953 6159 -19 855 345 69 35 chr9 1405186 1405734 -140865710 - L3 LINE CR1 -1 1576 1010 386 325 24 16 chr9 1405756 1405879 -140865565 + L2 LINE L2 3141 3264 -8 181 347 0 14 chr9 1406392 1406464 -140864980 - MIR SINE MIR -118 90 20 1929 277 43 5 chr9 1408267 1408852 -140862592 - L1ME3A LINE L1 -23 6147 5541 1932 128 11 3 chr9 1409175 1409457 -140861987 + AluSx SINE Alu 4 287 -25 201 268 0 0 chr9 1409750 1409791 -140861653 - L2 LINE L2 -14 3258 3218 482 239 127 0 chr9 1411098 1411232 -140860212 + MER69 DNA AcHobo 6 156 -1070 1342 99 16 5 chr9 1411254 1411446 -140859998 - AluSc SINE Alu -12 297 104 230 304 64 60 chr9 1411480 1411730 -140859714 - L2 LINE L2 -205 3067 2817 950 88 22 15 chr9 1413331 1413468 -140857976 + MER85 DNA T2_type 1 138 -1 1726 168 42 3 chr9 1413496 1413782 -140857662 - MER50-int LTR ERV1 -6902 303 7 3891 129 32 71 chr9 1413782 1414533 -140856911 - MER50 LTR ERV1 -12 722 1 542 252 60 33 chr9 1414709 1414860 -140856584 + MIR SINE MIR 3 157 -105 21 36 0 0 chr9 1414928 1414956 -140856488 + AT_rich Low_complexity Low_complexity 1 28 0 775 195 15 135 chr9 1415021 1415355 -140856089 - TAR1 Satellite telomeric -1815 296 3 * 1459 186 49 34 chr9 1415150 1415500 -140855944 - LTR60 LTR ERV1 -3 583 229 709 169 83 156 chr9 1415500 1415801 -140855643 - LTR60 LTR ERV1 -307 279 1 792 142 0 8 chr9 1416466 1416586 -140854858 + THE1C LTR MaLR 1 119 -256 * 1049 82 0 0 chr9 1416581 1416715 -140854729 + THE1C LTR MaLR 242 375 0 1693 239 69 40 chr9 1418123 1418824 -140852620 - MER20B DNA MER1_type -12 771 24 1140 252 145 24 chr9 1418824 1419237 -140852207 - LTR16B LTR ERVL 0 464 2 3906 135 64 70 chr9 1420328 1421112 -140850332 + LTR1 LTR ERV1 7 785 0 332 234 58 88 chr9 1422465 1422602 -140848842 + L2 LINE L2 3122 3254 -18 650 329 82 47 chr9 1423031 1423390 -140848054 - MLT1K LTR MaLR -17 571 185 1548 155 59 98 chr9 1423390 1423796 -140847648 + MLT1B LTR MaLR 1 390 0 650 329 82 47 chr9 1423796 1423971 -140847473 - MLT1K LTR MaLR -403 185 18 2996 141 22 59 chr9 1424565 1424796 -140846648 + MER4B LTR ERV1 1 239 -371 1103 122 168 0 chr9 1424796 1424992 -140846452 + MER30 DNA MER1_type 1 229 -1 2996 141 22 59 chr9 1424992 1425356 -140846088 + MER4B LTR ERV1 239 574 -36 232 296 61 10 chr9 1425558 1425656 -140845788 + LTR33 LTR ERVL 112 214 -307 561 266 44 25 chr9 1425710 1425913 -140845531 + LTR33 LTR ERVL 308 514 -7 477 246 10 74 chr9 1426024 1426227 -140845217 + MIR SINE MIR 63 252 -10 938 303 92 10 chr9 1426273 1426673 -140844771 - LTR16A LTR ERVL 0 450 18 1702 310 63 31 chr9 1426992 1428029 -140843415 - HERV16 LTR ERVL -300 5026 4066 507 342 38 14 chr9 1428365 1428746 -140842698 - HERV16 LTR ERVL -2060 3704 3288 1096 172 5 15 chr9 1479486 1479689 -140791755 + ERVL-B2 LTR ERVL 4141 4341 -1423 308 102 0 17 chr9 1479687 1479746 -140791698 + ERVL-B2 LTR ERVL 5699 5756 -8 * 2277 198 4 26 chr9 1479746 1480215 -140791229 + MLT2B2 LTR ERVL 9 467 -48 244 182 18 36 chr9 1480215 1480270 -140791174 + (CCTA)n Simple_repeat Simple_repeat 4 57 0 4199 189 40 9 chr9 1480624 1481974 -140789470 - L1MB5 LINE L1 0 6174 4789 540 273 68 18 chr9 1483675 1483854 -140787590 + MIR SINE MIR 20 211 -51 28 48 0 0 chr9 1484303 1484345 -140787099 + AT_rich Low_complexity Low_complexity 1 42 0 23 0 0 0 chr9 1484474 1484497 -140786947 + AT_rich Low_complexity Low_complexity 1 23 0 197 211 18 0 chr9 1484658 1484715 -140786729 + (CA)n Simple_repeat Simple_repeat 2 59 0 215 227 0 0 chr9 1484732 1484776 -140786668 + (CATATA)n Simple_repeat Simple_repeat 2 45 0 898 226 19 33 chr9 1484776 1484988 -140786456 + MER63A DNA MER1_type 2 210 0 788 93 0 0 chr9 1485032 1485139 -140786305 - MER4E LTR ERV1 0 766 660 620 111 0 0 chr9 1485137 1485226 -140786218 - MER4E LTR ERV1 -562 217 129 809 233 38 38 chr9 1485226 1485518 -140785926 + LTR13 LTR ERVK 1 292 -715 495 245 1 2 chr9 1485523 1485667 -140785777 - L1MA10 LINE L1 -23 6143 6003 288 301 76 51 chr9 1486626 1486809 -140784635 - MIR SINE MIR -42 220 37 6364 168 27 7 chr9 1487870 1490068 -140781376 - L1PB3 LINE L1 -1 6153 3911 237 322 26 0 chr9 1490734 1490849 -140780595 + LTR40c LTR ERVL 171 288 -177 815 122 0 0 chr9 1490884 1491007 -140780437 - MLT2A2 LTR ERVL -30 423 301 41015 48 4 1 chr9 1491568 1497702 -140773742 + L1PA4 LINE L1 4 6155 0 302 300 100 19 chr9 1497849 1498009 -140773435 + L1ME4a LINE L1 5255 5427 -932 514 302 56 28 chr9 1498085 1498443 -140773001 + L1ME4a LINE L1 5566 5933 -188 759 195 7 7 chr9 1498797 1498946 -140772498 + MER106B DNA MER1_type 7 155 -904 4624 178 30 51 chr9 1498975 1499135 -140772309 - L1MA9 LINE L1 0 6548 6386 1720 99 114 33 chr9 1499135 1499408 -140772036 - AluSg SINE Alu -15 295 1 4624 178 30 51 chr9 1499408 1501420 -140770024 - L1MA9 LINE L1 -162 6386 4425 905 217 54 27 chr9 1501601 1502134 -140769310 - L1MA9 LINE L1 -4177 2206 1146 40511 38 21 1 chr9 1502152 1508181 -140763263 - L1PA3 LINE L1 -1 6154 3 2335 257 46 33 chr9 1508181 1509497 -140761947 - L1M3c LINE L1 -4739 2298 958 1359 193 0 7 chr9 1509497 1509771 -140761673 - L1M3c LINE L1 -6758 272 1 24 77 0 0 chr9 1509783 1509835 -140761609 + AT_rich Low_complexity Low_complexity 1 52 0 240 100 0 0 chr9 1510252 1510292 -140761152 + (CA)n Simple_repeat Simple_repeat 2 41 0 739 223 81 12 chr9 1511457 1511584 -140759860 - L1MD3 LINE L1 -2 7993 7876 2090 141 0 0 chr9 1511584 1511888 -140759556 + AluSx SINE Alu 1 304 -8 739 223 81 12 chr9 1511888 1512007 -140759437 - L1MD3 LINE L1 -119 7876 7730 462 303 8 8 chr9 1512306 1512428 -140759016 - MIR3 SINE MIR -29 179 58 236 170 19 0 chr9 1512491 1512544 -140758900 + (TA)n Simple_repeat Simple_repeat 2 55 0 314 341 8 38 chr9 1513432 1513564 -140757880 + MIR SINE MIR 8 135 -73 498 228 128 13 chr9 1513990 1514139 -140757305 + MLT1D LTR MaLR 1 166 -339 372 174 76 0 chr9 1514152 1514244 -140757200 + MLT1D LTR MaLR 407 505 0 325 325 118 14 chr9 1514549 1514761 -140756683 + MIR SINE MIR 14 247 -15 262 316 53 0 chr9 1514875 1514951 -140756493 - L2 LINE L2 -35 3278 3199 2276 101 29 9 chr9 1515681 1516029 -140755415 - L1PA7 LINE L1 -1 6153 5799 1157 266 91 54 chr9 1516072 1516587 -140754857 - L1M4 LINE L1 -5856 686 153 * 25930 50 15 1 chr9 1516585 1520843 -140750601 - L1PA5 LINE L1 0 6154 1834 349 205 13 0 chr9 1520943 1521021 -140750423 + L1 LINE L1 4138 4216 -1930 1324 183 9 68 chr9 1521044 1521367 -140750077 - MLT2A2 LTR ERVL -149 304 1 230 277 42 42 chr9 1521384 1521503 -140749941 + LTR40b LTR ERVL 305 423 -39 238 154 77 43 chr9 1522351 1522468 -140748976 + (TTAA)n Simple_repeat Simple_repeat 1 121 0 181 330 75 32 chr9 1522481 1522575 -140748869 - L2 LINE L2 -17 3255 3158 392 332 108 56 chr9 1522738 1523006 -140748438 + L2 LINE L2 2987 3268 -4 2480 211 46 48 chr9 1523104 1523938 -140747506 + L1ME1 LINE L1 5254 6243 -91 201 154 0 0 chr9 1523949 1523988 -140747456 + (TG)n Simple_repeat Simple_repeat 2 40 0 28 86 0 0 chr9 1524746 1524816 -140746628 + AT_rich Low_complexity Low_complexity 1 70 0 207 100 0 0 chr9 1525030 1525060 -140746384 + (TG)n Simple_repeat Simple_repeat 1 30 0 266 296 0 0 chr9 1525060 1525158 -140746286 + GA-rich Low_complexity Low_complexity 2 99 0 467 360 7 7 chr9 1525989 1526142 -140745302 + MIR SINE MIR 33 185 -77 1194 131 23 0 chr9 1526786 1527048 -140744396 - L1MA10 LINE L1 -568 5766 5420 2527 184 19 25 chr9 1527048 1527614 -140743830 + L1MA10 LINE L1 5762 6324 -10 224 240 53 27 chr9 1527814 1527889 -140743555 - MIR SINE MIR -30 232 156 433 336 159 17 chr9 1527950 1528366 -140743078 - L2 LINE L2 0 3313 2839 758 263 56 117 chr9 1529001 1529538 -140741906 + LTR33 LTR ERVL 3 506 -15 398 236 154 0 chr9 1529620 1529730 -140741714 - MIR SINE MIR -99 163 37 1917 275 91 15 chr9 1530515 1531433 -140740011 - L1ME3A LINE L1 -5 6165 5175 376 183 238 16 chr9 1531578 1531704 -140739740 + MER21B LTR ERV1 662 815 -48 560 186 180 0 chr9 1531766 1531927 -140739517 + L1MC5 LINE L1 7712 7901 -60 481 335 17 30 chr9 1531945 1532181 -140739263 - L2 LINE L2 -1480 1834 1602 732 292 83 74 chr9 1532207 1532490 -140738954 - L2 LINE L2 -340 2974 2695 417 20 0 0 chr9 1532490 1532540 -140738904 + (TG)n Simple_repeat Simple_repeat 2 51 0 732 292 83 74 chr9 1532540 1532666 -140738778 - L2 LINE L2 -619 2695 2558 1583 249 46 20 chr9 1532666 1533119 -140738325 + MLT1C LTR MaLR 1 465 -2 732 292 83 74 chr9 1533119 1533153 -140738291 - L2 LINE L2 -756 2558 2526 58 102 0 0 chr9 1533153 1533358 -140738086 + AT_rich Low_complexity Low_complexity 1 205 0 403 267 91 91 chr9 1533488 1533806 -140737638 + L1ME4a LINE L1 4669 4986 -1160 42951 48 4 1 chr9 1533912 1540046 -140731398 + L1PA4 LINE L1 4 6155 0 228 300 9 9 chr9 1540243 1540353 -140731091 + L1P LINE L1 5318 5427 -724 597 304 50 22 chr9 1540429 1540787 -140730657 + L1ME4a LINE L1 5566 5933 -188 810 195 7 7 chr9 1541141 1541290 -140730154 + MER106B DNA MER1_type 7 155 -904 4951 178 30 51 chr9 1541319 1541479 -140729965 - L1MA9 LINE L1 0 6548 6386 1704 99 114 33 chr9 1541479 1541752 -140729692 - AluSg SINE Alu -15 295 1 4951 178 30 51 chr9 1541752 1543764 -140727680 - L1MA9 LINE L1 -162 6386 4425 972 227 66 32 chr9 1543752 1544478 -140726966 - L1MA9 LINE L1 -4177 2206 1146 * 40220 63 12 5 chr9 1544496 1550595 -140720849 - L1PA2 LINE L1 -1 6154 11 490 256 17 59 chr9 1550615 1550848 -140720596 - L1ME LINE L1 -690 5480 5256 314 304 81 40 chr9 1550857 1551005 -140720439 + MLT1D LTR MaLR 3 156 -349 1441 240 58 0 chr9 1551033 1551467 -140719977 + L1MB5 LINE L1 4114 4572 -1574 4433 179 21 26 chr9 1551477 1552383 -140719061 + L1MB5 LINE L1 5254 6154 -20 478 285 60 35 chr9 1552446 1552646 -140718798 - MLT1J2 LTR MaLR -241 209 5 242 297 66 22 chr9 1552649 1552740 -140718704 + MER5A DNA MER1_type 93 187 -2 359 21 21 0 chr9 1553709 1553757 -140717687 + (CA)n Simple_repeat Simple_repeat 2 50 0 3611 208 49 76 chr9 1553804 1553896 -140717548 + L1MB8 LINE L1 4021 4114 -2032 3625 72 4 6 chr9 1553896 1554383 -140717061 - L1PA8 LINE L1 -3 6169 5684 3611 208 49 76 chr9 1554383 1555587 -140715857 + L1MB8 LINE L1 4114 5282 -864 23 78 0 0 chr9 1555588 1555639 -140715805 + AT_rich Low_complexity Low_complexity 1 51 0 3187 192 74 44 chr9 1555694 1556560 -140714884 + L1MB8 LINE L1 5285 6176 -2 243 0 0 0 chr9 1556683 1556710 -140714734 + (TG)n Simple_repeat Simple_repeat 2 28 0 1496 208 38 38 chr9 1557314 1557661 -140713783 - MLT1A1 LTR MaLR 0 365 19 418 296 13 72 chr9 1557726 1557878 -140713566 + MIR SINE MIR 76 218 -44 5417 128 20 9 chr9 1558047 1558938 -140712506 - L1PB3 LINE L1 0 6154 5254 338 336 41 0 chr9 1559010 1559132 -140712312 - MIR3 SINE MIR -21 187 61 184 156 47 94 chr9 1559786 1559850 -140711594 + MIR SINE MIR 70 130 -132 193 311 0 0 chr9 1560210 1560255 -140711189 + MIR SINE MIR 196 240 -22 * 209 308 0 0 chr9 1560221 1560273 -140711171 + L2 LINE L2 3252 3303 -10 1958 145 7 0 chr9 1562001 1562297 -140709147 + AluSx SINE Alu 1 298 -14 411 196 38 0 chr9 1562301 1562459 -140708985 + (TA)n Simple_repeat Simple_repeat 2 165 0 469 211 11 0 chr9 1562474 1562564 -140708880 - LTR16C LTR ERVL -2 489 399 495 235 38 0 chr9 1565192 1565324 -140706120 - Charlie4 DNA MER1_type -1 1960 1824 911 182 21 42 chr9 1566286 1566478 -140704966 - MER5A DNA MER1_type -1 188 1 192 200 0 0 chr9 1566675 1566720 -140704724 + T-rich Low_complexity Low_complexity 1 45 0 25 0 0 0 chr9 1569102 1569127 -140702317 + AT_rich Low_complexity Low_complexity 1 25 0 595 242 149 6 chr9 1570027 1570188 -140701256 - MER5A DNA MER1_type 0 189 6 26 0 0 0 chr9 1570784 1570810 -140700634 + AT_rich Low_complexity Low_complexity 1 26 0 649 87 39 0 chr9 1571113 1571217 -140700227 + L1MA3 LINE L1 6198 6305 0 636 235 15 0 chr9 1571337 1571469 -140699975 + MER94 DNA DNA 1 134 0 2155 101 0 10 chr9 1571514 1571812 -140699632 + AluSg SINE Alu 6 300 -10 211 268 106 101 chr9 1571833 1572031 -140699413 - L3 LINE CR1 -100 1477 1279 430 292 5 103 chr9 1572201 1572396 -140699048 - L3 LINE CR1 -30 1547 1372 293 340 64 32 chr9 1573111 1573299 -140698145 + MIR3 SINE MIR 10 203 -5 1796 166 7 3 chr9 1574023 1574319 -140697125 - AluJb SINE Alu -15 297 1 381 307 92 0 chr9 1574823 1574986 -140696458 + Charlie8 DNA MER1_type 96 273 -2144 315 295 150 52 chr9 1576487 1576680 -140694764 + MIR SINE MIR 46 257 -5 205 325 163 12 chr9 1577142 1577302 -140694142 + L2 LINE L2 2157 2340 -974 2478 174 8 32 chr9 1577356 1577828 -140693616 - MER70B LTR ERVL -117 461 1 395 366 31 26 chr9 1578174 1578541 -140692903 + L2 LINE L2 2693 3053 -219 228 241 48 24 chr9 1578585 1578668 -140692776 + MLT1I LTR MaLR 130 214 -195 268 385 117 6 chr9 1578845 1579024 -140692420 + L2 LINE L2 3070 3268 -4 629 302 155 22 chr9 1579231 1579632 -140691812 - LTR33 LTR ERVL -2 519 66 408 261 137 70 chr9 1579774 1580015 -140691429 + L2 LINE L2 2980 3236 -36 199 283 0 0 chr9 1580503 1580556 -140690888 + MIR SINE MIR 76 128 -80 198 0 0 0 chr9 1581633 1581655 -140689789 + (CAG)n Simple_repeat Simple_repeat 1 22 0 420 284 43 7 chr9 1582171 1582312 -140689132 - L2 LINE L2 0 3313 3168 434 345 40 22 chr9 1582642 1582685 -140688759 - L2 LINE L2 -543 2771 2730 477 277 9 0 chr9 1582685 1582797 -140688647 - MER81 DNA DNA -1 113 1 434 345 40 22 chr9 1582797 1582979 -140688465 - L2 LINE L2 -584 2730 2542 1743 168 58 28 chr9 1583032 1583396 -140688048 - THE1C LTR MaLR 0 375 1 5122 132 11 19 chr9 1583396 1584244 -140687200 - THE1C-int LTR MaLR 0 1580 740 1817 116 21 0 chr9 1584248 1584533 -140686911 - THE1C-int LTR MaLR -1184 396 106 5342 108 13 12 chr9 1584533 1585353 -140686091 + HERVL-B3 LTR ERVL 4834 5654 0 1931 215 50 59 chr9 1585353 1585912 -140685532 + MLT2B3 LTR ERVL 1 554 0 807 309 139 14 chr9 1585935 1586440 -140685004 - L2 LINE L2 -826 2488 1921 452 111 0 0 chr9 1586441 1586504 -140684940 + AluJ/FRAM SINE Alu 233 295 -17 201 375 60 39 chr9 1586512 1586744 -140684700 - L2 LINE L2 -1391 1923 1687 250 276 43 43 chr9 1586920 1587036 -140684408 + L2 LINE L2 2595 2710 -604 735 224 37 8 chr9 1587042 1587287 -140684157 + L1MD2 LINE L1 2346 2597 -3943 3408 213 42 21 chr9 1587292 1587492 -140683952 + L1MD2 LINE L1 5482 5676 -1077 2068 84 7 15 chr9 1587492 1587766 -140683678 + AluY SINE Alu 22 293 -18 3408 213 42 21 chr9 1587766 1588584 -140682860 + L1MD2 LINE L1 5676 6538 -215 346 224 10 0 chr9 1588573 1588671 -140682773 + L1MC1 LINE L1 5204 5302 -844 * 271 203 0 0 chr9 1588712 1588771 -140682673 + L1MC1 LINE L1 5292 5350 -983 1019 153 20 10 chr9 1588781 1588977 -140682467 + L1MC1 LINE L1 5571 5768 -565 3065 180 38 19 chr9 1588981 1589579 -140681865 + L1MC1 LINE L1 5356 5941 -301 6220 57 1 1 chr9 1589579 1590354 -140681090 + L1PA6 LINE L1 5367 6141 -13 3065 180 38 19 chr9 1590354 1590379 -140681065 + L1MC1 LINE L1 5941 5964 -278 1671 205 19 3 chr9 1590379 1590745 -140680699 + L1MC1 LINE L1 5962 6333 0 3065 180 38 19 chr9 1590745 1590995 -140680449 + L1MC1 LINE L1 5964 6242 0 654 329 111 23 chr9 1590997 1591111 -140680333 + L2 LINE L2 2708 2811 -502 186 43 0 0 chr9 1591111 1591134 -140680310 + (TC)n Simple_repeat Simple_repeat 2 24 0 654 329 111 23 chr9 1591134 1591572 -140679872 + L2 LINE L2 2811 3312 -1 1075 149 97 154 chr9 1592281 1592664 -140678780 - MLT1A2 LTR MaLR -12 362 2 2897 6 0 0 chr9 1592909 1593223 -140678221 - AluYb8 SINE Alu -4 314 1 1635 264 128 38 chr9 1593322 1594273 -140677171 + L2 LINE L2 2032 3120 -193 2245 162 26 33 chr9 1594273 1594693 -140676751 + MER47B DNA MER2_type 1 417 -1 1635 264 128 38 chr9 1594693 1594902 -140676542 + L2 LINE L2 3120 3309 -4 197 200 25 0 chr9 1594905 1594945 -140676499 - MIR SINE MIR -63 145 105 2016 107 13 3 chr9 1594997 1595314 -140676130 - L1PA15 LINE L1 -582 5583 5264 3417 130 23 5 chr9 1595314 1595875 -140675569 + L1PA15 LINE L1 5595 6165 0 394 325 12 35 chr9 1597372 1597541 -140673903 - MER5B DNA MER1_type 0 178 14 302 274 51 45 chr9 1597708 1597865 -140673579 + MIR SINE MIR 80 237 -25 502 289 151 0 chr9 1598256 1598408 -140673036 + MER5A DNA MER1_type 9 183 -6 407 267 223 5 chr9 1600090 1600292 -140671152 - MER112 DNA MER1_type -7 253 8 1123 127 16 37 chr9 1600484 1600673 -140670771 + MER5A DNA MER1_type 5 189 0 237 248 23 39 chr9 1601533 1601662 -140669782 + (CA)n Simple_repeat Simple_repeat 1 127 0 304 118 29 0 chr9 1601695 1601763 -140669681 + (CA)n Simple_repeat Simple_repeat 1 70 0 2417 69 0 3 chr9 1601923 1602227 -140669217 + AluY SINE Alu 1 303 -8 1924 169 0 3 chr9 1602351 1602647 -140668797 + AluJb SINE Alu 3 297 -15 260 280 107 39 chr9 1602665 1603001 -140668443 + L1M4 LINE L1 3587 3945 -2201 4021 211 34 36 chr9 1603012 1604137 -140667307 - L1MB3 LINE L1 -3 6163 5036 1780 188 26 0 chr9 1604137 1604441 -140667003 - AluJb SINE Alu 0 312 1 4021 211 34 36 chr9 1604441 1605415 -140666029 - L1MB3 LINE L1 -1130 5036 4062 2795 239 71 2 chr9 1605402 1606274 -140665170 - L1MB3 LINE L1 -2319 3810 2879 * 2414 62 0 28 chr9 1606491 1606811 -140664633 - AluY SINE Alu 0 311 1 396 73 0 0 chr9 1606816 1606871 -140664573 + L1PA6 LINE L1 6094 6148 -6 1899 222 103 2 chr9 1606980 1607435 -140664009 + MLT1D LTR MaLR 1 501 -4 898 274 114 76 chr9 1607504 1608453 -140662991 - L1MB3 LINE L1 -4862 1257 335 2566 114 5 11 chr9 1608453 1608830 -140662614 - THE1C LTR MaLR 0 375 1 898 274 114 76 chr9 1608830 1609168 -140662276 - L1MB3 LINE L1 -5784 335 11 991 208 97 143 chr9 1609174 1609760 -140661684 - MLT1F1 LTR MaLR 0 567 17 1999 191 12 10 chr9 1609784 1610193 -140661251 - L1PA16 LINE L1 0 6166 5757 894 245 100 121 chr9 1610243 1611076 -140660368 + L1ME4a LINE L1 5307 6121 0 413 331 22 43 chr9 1611378 1611562 -140659882 - MIR SINE MIR -50 212 33 184 395 47 12 chr9 1611596 1611682 -140659762 - L2 LINE L2 -28 3244 3156 417 86 0 0 chr9 1612466 1612524 -140658920 + (TAA)n Simple_repeat Simple_repeat 3 60 0 200 257 57 14 chr9 1612640 1612710 -140658734 + MIR SINE MIR 58 130 -78 567 228 78 71 chr9 1612779 1613034 -140658410 - MIR SINE MIR -1 261 5 485 361 50 4 chr9 1613608 1613846 -140657598 + MIR SINE MIR 8 256 -6 239 279 15 0 chr9 1615956 1616024 -140655420 + MIR SINE MIR 178 246 -16 8312 198 31 17 chr9 1616393 1619264 -140652180 - L1PA16 LINE L1 -9 6157 3311 671 245 14 0 chr9 1620143 1620290 -140651154 - MIR SINE MIR -111 151 3 24 0 0 0 chr9 1620820 1620844 -140650600 + AT_rich Low_complexity Low_complexity 1 24 0 266 260 0 26 chr9 1620995 1621072 -140650372 + CT-rich Low_complexity Low_complexity 2 76 0 516 222 71 142 chr9 1623013 1623337 -140648107 + MLT1J2 LTR MaLR 150 450 0 27 0 0 0 chr9 1623468 1623495 -140647949 + AT_rich Low_complexity Low_complexity 1 27 0 255 300 0 0 chr9 1623566 1623636 -140647808 - L2 LINE L2 0 3313 3244 240 345 36 9 chr9 1623749 1623859 -140647585 - L2 LINE L2 -91 3222 3110 34 24 0 0 chr9 1624578 1624619 -140646825 + AT_rich Low_complexity Low_complexity 1 41 0 625 245 19 26 chr9 1625011 1625220 -140646224 - MIR SINE MIR 0 262 8 181 303 110 58 chr9 1626023 1626178 -140645266 + L3b LINE CR1 1225 1387 -196 321 260 20 82 chr9 1626271 1626417 -140645027 - MIR SINE MIR -56 206 70 279 0 0 0 chr9 1626728 1626759 -140644685 + (A)n Simple_repeat Simple_repeat 1 31 0 630 175 0 0 chr9 1626834 1626948 -140644496 - L1MB8 LINE L1 -2 6176 6063 307 331 97 36 chr9 1627323 1627737 -140643707 + L2 LINE L2 2267 2705 -609 3377 111 4 14 chr9 1627737 1628242 -140643202 + Charlie3 DNA MER1_type 1 500 -2210 404 119 0 0 chr9 1628236 1628295 -140643149 + Charlie3 DNA MER1_type 2242 2300 -410 * 3024 97 2 50 chr9 1628298 1628782 -140642662 + Charlie3 DNA MER1_type 2245 2705 -5 180 356 20 89 chr9 1628784 1628986 -140642458 + L2 LINE L2 2699 2886 -428 2505 61 0 0 chr9 1629061 1629372 -140642072 - AluY SINE Alu 0 311 1 261 290 0 0 chr9 1629600 1629669 -140641775 + L2 LINE L2 3196 3264 -8 1993 196 70 32 chr9 1629755 1630286 -140641158 + L1MB3 LINE L1 5625 6175 -8 2351 148 0 3 chr9 1630286 1630652 -140640792 + MLT1A1 LTR MaLR 1 365 0 348 359 27 29 chr9 1630662 1630831 -140640613 + MIR3 SINE MIR 20 191 -17 328 296 49 0 chr9 1631072 1631153 -140640291 - L2 LINE L2 -2 3270 3186 231 200 0 0 chr9 1632182 1632222 -140639222 - L2 LINE L2 -12 3301 3262 200 313 138 12 chr9 1632315 1632395 -140639049 - MIR SINE MIR -53 209 120 * 231 344 56 11 chr9 1632378 1632468 -140638976 + MIR SINE MIR 28 121 -87 1353 190 26 95 chr9 1632561 1632983 -140638461 - MSTD LTR MaLR 0 396 4 5602 237 84 27 chr9 1633000 1634626 -140636818 - MSTD-int LTR MaLR -15 1720 2 979 172 59 25 chr9 1634628 1634832 -140636612 - MSTD LTR MaLR 0 396 186 2298 125 0 0 chr9 1635185 1635497 -140635947 - AluSx SINE Alu 0 312 1 349 293 96 19 chr9 1636763 1636920 -140634524 - MIR3 SINE MIR 0 208 40 367 277 85 57 chr9 1637544 1637721 -140633723 + MIR SINE MIR 35 216 -46 932 303 92 10 chr9 1637723 1638135 -140633309 - LTR16A LTR ERVL -4 446 1 358 350 12 8 chr9 1638276 1638558 -140632886 - ERVL LTR ERVL -327 5327 5046 563 356 35 23 chr9 1638592 1639106 -140632338 - ERVL LTR ERVL -754 4900 4436 633 315 36 47 chr9 1639228 1639730 -140631714 - ERVL LTR ERVL -2020 3634 3137 738 317 75 13 chr9 1639766 1640072 -140631372 - ERVL LTR ERVL -1912 3084 2760 3779 290 51 11 chr9 1640073 1641379 -140630065 - HERV16 LTR ERVL -3480 1516 158 420 364 65 16 chr9 1642633 1642817 -140628627 + MIR3 SINE MIR 1 193 -15 345 345 39 97 chr9 1642837 1643251 -140628193 - L2 LINE L2 0 3272 2883 540 286 120 36 chr9 1643704 1644797 -140626647 - L1MDb LINE L1 -3660 2555 1398 315 278 7 48 chr9 1644809 1645069 -140626375 - L1MDb LINE L1 -5097 1108 857 305 339 36 9 chr9 1645727 1645839 -140625605 - L1MDb LINE L1 -5953 252 138 253 254 0 0 chr9 1647864 1647927 -140623517 + GA-rich Low_complexity Low_complexity 2 64 0 954 188 18 61 chr9 1648236 1648428 -140623016 + MER20 DNA MER1_type 1 183 -36 2067 212 125 64 chr9 1648428 1649205 -140622239 - LTR1B LTR ERV1 0 826 3 954 188 18 61 chr9 1649205 1649241 -140622203 + MER20 DNA MER1_type 183 219 0 2015 137 3 3 chr9 1649381 1649680 -140621764 - AluSx SINE Alu -11 301 3 21 36 0 0 chr9 1649812 1649840 -140621604 + AT_rich Low_complexity Low_complexity 1 28 0 21 57 0 0 chr9 1649933 1649968 -140621476 + AT_rich Low_complexity Low_complexity 1 35 0 311 269 50 55 chr9 1650205 1650406 -140621038 - HAL1 LINE L1 -10 2497 2298 1266 298 109 10 chr9 1650418 1650931 -140620513 + Zaphod DNA AcHobo 44 607 -3424 2668 177 23 86 chr9 1650937 1651667 -140619777 - L1MC2 LINE L1 -2 6342 5659 642 254 83 99 chr9 1651665 1652525 -140618919 - L1ME LINE L1 -4968 1088 272 * 438 320 59 51 chr9 1652656 1653065 -140618379 - L1ME LINE L1 -5610 460 49 9598 224 46 29 chr9 1653117 1653629 -140617815 + L1MB2 LINE L1 1964 2466 -3941 12873 30 5 0 chr9 1653629 1655943 -140615501 + L1PA3 LINE L1 3833 6152 -3 9598 224 46 29 chr9 1655943 1659782 -140611662 + L1MB2 LINE L1 2466 6400 -7 1851 276 105 63 chr9 1659794 1659945 -140611499 - HAL1 LINE L1 -542 1965 1822 2512 74 3 0 chr9 1659945 1660254 -140611190 - AluSp SINE Alu -3 310 1 1851 276 105 63 chr9 1660254 1661884 -140609560 - HAL1 LINE L1 -685 1822 110 1034 184 23 122 chr9 1662493 1662836 -140608608 + MLT1A1 LTR MaLR 1 309 -56 196 29 0 57 chr9 1663793 1663828 -140607616 + (TTG)n Simple_repeat Simple_repeat 3 35 0 267 114 0 0 chr9 1664701 1664745 -140606699 + (CA)n Simple_repeat Simple_repeat 2 45 0 194 315 0 0 chr9 1665337 1665391 -140606053 - L2 LINE L2 -5 3308 3255 22 35 0 0 chr9 1665829 1665858 -140605586 + AT_rich Low_complexity Low_complexity 1 29 0 198 100 50 25 chr9 1666198 1666238 -140605206 + MIR SINE MIR 101 141 -67 2402 44 14 14 chr9 1666277 1666573 -140604871 + AluY SINE Alu 1 296 -15 777 193 0 40 chr9 1666651 1666827 -140604617 + MER3 DNA MER1_type 4 125 -84 248 148 19 56 chr9 1667532 1667586 -140603858 - MIR SINE MIR -79 183 132 242 253 53 13 chr9 1667813 1667888 -140603556 + L2 LINE L2 3194 3271 -1 5291 94 8 7 chr9 1667908 1668673 -140602771 + MER4E LTR ERV1 1 766 0 637 224 109 0 chr9 1669201 1669375 -140602069 + L1MC1 LINE L1 6141 6333 0 223 312 56 56 chr9 1669600 1669725 -140601719 + L2 LINE L2 3134 3258 -14 1240 180 25 109 chr9 1669827 1670221 -140601223 + MLT1A1 LTR MaLR 1 361 -4 692 269 55 43 chr9 1673911 1674167 -140597277 + MIR SINE MIR 4 262 0 23 54 0 0 chr9 1674516 1674553 -140596891 + AT_rich Low_complexity Low_complexity 1 37 0 243 220 0 34 chr9 1675382 1675441 -140596003 + (CATA)n Simple_repeat Simple_repeat 3 59 0 285 183 21 0 chr9 1675571 1675639 -140595805 - MER5A DNA MER1_type -116 73 4 597 196 0 0 chr9 1675663 1675770 -140595674 - AluSx SINE Alu -20 292 186 846 86 0 0 chr9 1675770 1675875 -140595569 - AluSx SINE Alu -207 105 1 703 351 59 52 chr9 1675930 1676703 -140594741 + L2 LINE L2 2481 3271 -1 1796 111 4 8 chr9 1676762 1677014 -140594430 + AluSq SINE Alu 12 262 -51 882 107 8 0 chr9 1677003 1677134 -140594310 + AluSp/q SINE Alu 179 310 -3 355 314 20 10 chr9 1677599 1677701 -140593743 + LTR67 LTR ERVL 115 217 -340 1238 251 5 64 chr9 1677732 1678122 -140593322 - L2 LINE L2 0 3313 2947 436 210 87 118 chr9 1678247 1678442 -140593002 + LTR67 LTR ERVL 361 549 -8 230 267 68 93 chr9 1678854 1678882 -140592562 + MER104 DNA Tc2 2 29 -1869 1853 145 0 30 chr9 1678882 1679202 -140592242 - AluSx SINE Alu 0 312 2 230 267 68 93 chr9 1679202 1679334 -140592110 + MER104 DNA Tc2 29 158 -22 3276 169 58 2 chr9 1679878 1680462 -140590982 - MER73 LTR ERVL 0 644 28 385 291 78 47 chr9 1680989 1681247 -140590197 - MLT1H LTR MaLR -204 345 80 207 321 43 62 chr9 1681415 1681577 -140589867 - MIR SINE MIR -6 256 98 216 0 0 0 chr9 1682409 1682433 -140589011 + (TA)n Simple_repeat Simple_repeat 2 25 0 241 224 20 0 chr9 1683099 1683148 -140588296 + GA-rich Low_complexity Low_complexity 4 53 0 838 246 212 15 chr9 1683753 1684078 -140587366 - MLT1J2 LTR MaLR -18 432 44 331 273 91 10 chr9 1684105 1684204 -140587240 - MIR SINE MIR -65 143 37 308 314 86 14 chr9 1685555 1685695 -140585749 + L2 LINE L2 3121 3270 -2 1745 226 12 0 chr9 1685788 1686125 -140585319 - MER58B DNA MER1_type 0 341 1 27 29 0 0 chr9 1686629 1686663 -140584781 + AT_rich Low_complexity Low_complexity 1 34 0 2075 113 44 10 chr9 1686754 1687047 -140584397 + AluSx SINE Alu 1 303 -9 614 328 70 29 chr9 1687233 1687474 -140583970 + MIR SINE MIR 12 262 0 259 357 134 0 chr9 1688385 1688497 -140582947 + MIR3 SINE MIR 55 181 -27 326 320 107 46 chr9 1688879 1689272 -140582172 + L2 LINE L2 2620 3034 -238 417 349 178 25 chr9 1689644 1689959 -140581485 - L2 LINE L2 -371 2943 2581 * 857 111 16 148 chr9 1689949 1690138 -140581306 - MER5A DNA MER1_type -25 164 1 238 370 0 0 chr9 1690138 1690228 -140581216 - L2 LINE L2 -724 2590 2501 2208 176 57 20 chr9 1690883 1691321 -140580123 + MLT1C LTR MaLR 11 464 -3 204 295 143 27 chr9 1691525 1691637 -140579807 + L2 LINE L2 3146 3270 -2 1573 202 76 9 chr9 1692328 1692670 -140578774 - MLT1A1 LTR MaLR 0 365 1 278 282 68 10 chr9 1692670 1692773 -140578671 + MER94 DNA DNA 26 134 0 2376 65 0 10 chr9 1692988 1693282 -140578162 - AluY SINE Alu -20 291 1 491 318 77 14 chr9 1693504 1693724 -140577720 + MIR SINE MIR 29 262 0 2169 106 0 0 chr9 1694843 1695126 -140576318 + AluSg SINE Alu 6 288 -22 595 281 54 0 chr9 1696146 1696331 -140575113 - LTR16A LTR ERVL -235 215 21 397 257 67 0 chr9 1696330 1696435 -140575009 + MER94 DNA DNA 22 133 -1 * 232 312 52 0 chr9 1697170 1697247 -140574197 + L2 LINE L2 3231 3311 -2 1600 328 17 17 chr9 1698408 1698990 -140572454 - HERV16 LTR ERVL -2764 2232 1651 1051 235 101 35 chr9 1699025 1699391 -140572053 - LTR16A LTR ERVL -1 449 60 388 257 67 0 chr9 1699422 1699527 -140571917 + MER94 DNA DNA 22 133 -1 2001 139 3 19 chr9 1700321 1700637 -140570807 + AluJb SINE Alu 1 311 -1 281 191 96 53 chr9 1701207 1701301 -140570143 + L2 LINE L2 3211 3308 -5 470 252 22 0 chr9 1701807 1701942 -140569502 - L1M4 LINE L1 -1127 5019 4882 34 0 0 0 chr9 1702189 1702223 -140569221 + AT_rich Low_complexity Low_complexity 1 34 0 315 277 62 45 chr9 1702415 1702511 -140568933 + L1ME3 LINE L1 5747 5849 -313 2274 119 0 0 chr9 1702511 1702823 -140568621 - AluSx SINE Alu 0 312 1 315 277 62 45 chr9 1702823 1702903 -140568541 + L1ME3 LINE L1 5849 5926 -236 646 247 88 36 chr9 1703098 1703292 -140568152 - MLT1H LTR MaLR 0 549 364 646 233 124 71 chr9 1703313 1703579 -140567865 - MLT1H LTR MaLR -258 291 12 25 51 0 0 chr9 1703698 1703737 -140567707 + AT_rich Low_complexity Low_complexity 1 39 0 393 346 92 19 chr9 1707241 1707304 -140564140 - L3 LINE CR1 -31 1546 1489 2192 138 39 30 chr9 1707304 1707665 -140563779 + THE1B LTR MaLR 1 364 0 393 346 92 19 chr9 1707665 1707861 -140563583 - L3 LINE CR1 -88 1489 1268 354 228 184 56 chr9 1707888 1708208 -140563236 - L1ME4a LINE L1 -31 6090 5730 219 306 40 65 chr9 1708229 1708353 -140563091 - L2 LINE L2 0 3313 3193 279 278 38 45 chr9 1708511 1708644 -140562800 - L1ME4a LINE L1 -590 5531 5400 811 241 82 5 chr9 1709602 1709822 -140561622 - MIR SINE MIR 0 262 26 325 300 100 9 chr9 1709890 1710000 -140561444 - MIR3 SINE MIR -54 154 35 29 28 0 0 chr9 1710152 1710188 -140561256 + AT_rich Low_complexity Low_complexity 1 36 0 44120 44 6 3 chr9 1710925 1717054 -140554390 + L1PA3 LINE L1 8 6153 -2 222 118 0 0 chr9 1717147 1717181 -140554263 + (TC)n Simple_repeat Simple_repeat 2 35 0 902 358 47 12 chr9 1717522 1718094 -140553350 - L2 LINE L2 -1102 2212 1621 684 24 0 0 chr9 1718133 1718215 -140553229 + (TC)n Simple_repeat Simple_repeat 1 82 0 36850 54 9 6 chr9 1718681 1724192 -140547252 + L1PA4 LINE L1 628 6155 0 2786 16 0 0 chr9 1724195 1724500 -140546944 + AluYa5 SINE Alu 1 305 -6 29 0 0 0 chr9 1724670 1724699 -140546745 + AT_rich Low_complexity Low_complexity 1 29 0 3105 303 66 47 chr9 1725163 1726815 -140544629 + ERVL LTR ERVL 1012 2695 -3069 453 258 0 0 chr9 1726839 1726932 -140544512 + MER5A DNA MER1_type 9 101 -88 892 290 128 28 chr9 1726963 1727365 -140544079 + ERVL LTR ERVL 2675 3104 -2381 1253 127 0 0 chr9 1727482 1727655 -140543789 + AluJb SINE Alu 140 312 0 281 191 96 53 chr9 1728225 1728319 -140543125 + L2 LINE L2 3211 3308 -5 470 252 22 0 chr9 1728825 1728960 -140542484 - L1M4 LINE L1 -1127 5019 4882 34 0 0 0 chr9 1729207 1729241 -140542203 + AT_rich Low_complexity Low_complexity 1 34 0 294 212 63 0 chr9 1729433 1729504 -140541940 + L1ME LINE L1 5747 5813 -349 2818 19 0 0 chr9 1729529 1729840 -140541604 - AluYa5 SINE Alu 0 311 1 35584 41 3 2 chr9 1729843 1734913 -140536531 - L1PA4 LINE L1 0 6155 1081 622 178 0 0 chr9 1734881 1734982 -140536462 - L1P3 LINE L1 -6351 110 10 * 44 70 0 0 chr9 1735128 1735214 -140536230 + AT_rich Low_complexity Low_complexity 1 86 0 21 0 0 0 chr9 1735964 1735985 -140535459 + AT_rich Low_complexity Low_complexity 1 21 0 2642 287 119 14 chr9 1736240 1737485 -140533959 + L2 LINE L2 1378 2752 -562 232 273 130 63 chr9 1737485 1737723 -140533721 - LTR16A1 LTR ERVL -12 445 192 701 261 187 28 chr9 1737748 1738112 -140533332 + L2 LINE L2 2892 3313 0 1510 184 46 158 chr9 1739349 1739875 -140531569 - MLT1C LTR MaLR 0 467 1 512 321 29 24 chr9 1740592 1740838 -140530606 + MIR SINE MIR 2 248 -14 261 216 0 0 chr9 1741897 1741948 -140529496 - MADE1 DNA Mariner 0 80 30 2575 146 56 15 chr9 1742029 1742440 -140529004 + MSTA LTR MaLR 1 428 0 300 241 128 73 chr9 1742887 1743160 -140528284 + LTR16C LTR ERVL 163 483 -8 223 283 64 121 chr9 1743276 1743696 -140527748 + L2 LINE L2 2869 3264 -8 2089 110 40 3 chr9 1745009 1745308 -140526136 - AluSx SINE Alu -2 310 1 2459 161 32 19 chr9 1745324 1745795 -140525649 - L1MB7 LINE L1 -9 6175 5699 266 254 0 0 chr9 1748574 1748633 -140522811 + MIR SINE MIR 93 151 -111 313 282 10 58 chr9 1749558 1749661 -140521783 + MIR3 SINE MIR 90 187 -21 322 253 69 11 chr9 1750406 1750493 -140520951 - MIR SINE MIR -142 120 29 1139 226 11 90 chr9 1751563 1751940 -140519504 + MLT2B1 LTR ERVL 1 347 -173 1973 209 45 5 chr9 1751949 1752475 -140518969 + LTR69 LTR ERVL 1 588 0 659 176 0 135 chr9 1752475 1752668 -140518776 + MLT2B1 LTR ERVL 352 518 -2 579 245 108 44 chr9 1752805 1753009 -140518435 - MLT1C LTR MaLR 0 467 251 3700 198 32 26 chr9 1753014 1753816 -140517628 + L1MC3 LINE L1 5863 6669 -1116 743 198 32 0 chr9 1753973 1754099 -140517345 + FLAM_A SINE Alu 1 130 -3 536 165 157 58 chr9 1754524 1754645 -140516799 + FLAM_C SINE Alu 1 133 0 517 186 230 0 chr9 1755088 1755201 -140516243 - FLAM_C SINE Alu -2 141 3 24 53 0 0 chr9 1755846 1755884 -140515560 + AT_rich Low_complexity Low_complexity 1 38 0 851 192 47 5 chr9 1756190 1756383 -140515061 - L1MC4 LINE L1 -680 7362 7162 5365 133 23 52 chr9 1756533 1757397 -140514047 - L1MA9 LINE L1 0 6312 5481 2169 115 7 0 chr9 1757397 1757702 -140513742 - AluSx SINE Alu -5 307 1 5365 133 23 52 chr9 1757702 1757853 -140513591 - L1MA9 LINE L1 -831 5481 5327 258 32 0 0 chr9 1758811 1758842 -140512602 + (TAAAA)n Simple_repeat Simple_repeat 1 31 0 611 219 15 7 chr9 1759593 1759730 -140511714 - MSTD LTR MaLR -258 138 1 397 332 57 17 chr9 1760339 1760640 -140510804 + HAL1 LINE L1 110 422 -2085 403 302 132 16 chr9 1761277 1761466 -140509978 - MIR SINE MIR -39 223 13 243 0 0 0 chr9 1761550 1761577 -140509867 + (TAA)n Simple_repeat Simple_repeat 2 28 0 2076 112 0 10 chr9 1762864 1763178 -140508266 + AluY SINE Alu 1 311 0 7722 41 7 1 chr9 1764302 1765404 -140506040 + L1PA4 LINE L1 5037 6144 -11 222 118 0 0 chr9 1765508 1765542 -140505902 + (TC)n Simple_repeat Simple_repeat 2 35 0 871 356 47 14 chr9 1765884 1766457 -140504987 - L2 LINE L2 -1102 2212 1621 399 21 0 0 chr9 1766496 1766544 -140504900 + (TC)n Simple_repeat Simple_repeat 1 48 0 2007 206 104 50 chr9 1766832 1767406 -140504038 - MLT1E3 LTR MaLR 0 624 20 201 94 0 0 chr9 1767521 1767553 -140503891 + (TTGG)n Simple_repeat Simple_repeat 4 35 0 2317 98 0 0 chr9 1767557 1767853 -140503591 - AluY SINE Alu -15 296 1 854 78 0 0 chr9 1768092 1768194 -140503250 + L1PA8 LINE L1 6057 6158 -14 916 266 72 26 chr9 1768235 1768540 -140502904 + L1M4b LINE L1 1062 1380 -5479 502 264 119 6 chr9 1768838 1769191 -140502253 + MLT1H LTR MaLR 138 549 0 302 291 30 79 chr9 1769991 1770156 -140501288 + MIR SINE MIR 12 168 -94 417 259 118 30 chr9 1770255 1770390 -140501054 + MIR SINE MIR 14 160 -102 2090 56 0 0 chr9 1770399 1770650 -140500794 - L1PA2 LINE L1 -403 5752 5502 3836 21 0 0 chr9 1770650 1771068 -140500376 + L1PA2 LINE L1 5737 6155 0 2174 186 74 9 chr9 1771436 1771871 -140499573 - L1MB2 LINE L1 -23 6148 5686 359 292 62 9 chr9 1772508 1772621 -140498823 + L2 LINE L2 3179 3297 -16 1583 176 61 3 chr9 1773368 1773663 -140497781 + AluJb SINE Alu 1 312 0 3514 77 2 0 chr9 1773813 1774268 -140497176 - L1PA7 LINE L1 -785 5361 4903 6600 62 6 0 chr9 1774268 1775054 -140496390 + L1PA7 LINE L1 5363 6154 0 229 282 14 84 chr9 1775064 1775135 -140496309 - MIR SINE MIR -109 99 34 184 0 97 0 chr9 1777008 1777039 -140494405 + (TAAA)n Simple_repeat Simple_repeat 1 34 0 2373 221 46 15 chr9 1777390 1777916 -140493528 - MLT1F LTR MaLR 0 542 1 202 234 9 140 chr9 1778792 1778899 -140492545 - MER5B DNA MER1_type 0 178 86 265 275 63 21 chr9 1779965 1780107 -140491337 - ERVL LTR ERVL -8 5756 5609 27 49 0 0 chr9 1780265 1780306 -140491138 + AT_rich Low_complexity Low_complexity 1 41 0 1642 209 8 48 chr9 1780441 1780819 -140490625 - MLT1A1 LTR MaLR 0 365 3 7132 205 23 64 chr9 1780832 1782178 -140489266 - MLT1A1-int LTR MaLR -6 1729 425 356 43 0 0 chr9 1782178 1782225 -140489219 + MADE1 DNA Mariner 30 76 -4 7132 205 23 64 chr9 1782225 1782634 -140488810 - MLT1A1-int LTR MaLR -1310 425 1 1475 248 19 14 chr9 1782634 1782997 -140488447 - MLT1A1 LTR MaLR 0 365 1 4864 306 71 69 chr9 1783013 1785446 -140485998 - ERVL LTR ERVL -546 5218 2677 457 258 0 0 chr9 1785446 1785539 -140485905 - MER5A DNA MER1_type -88 101 9 4864 306 71 69 chr9 1785539 1787408 -140484036 - ERVL LTR ERVL -3087 2677 814 29 0 0 0 chr9 1787679 1787708 -140483736 + AT_rich Low_complexity Low_complexity 1 29 0 2749 16 0 0 chr9 1787878 1788183 -140483261 - AluYa5 SINE Alu -6 305 1 33215 41 3 2 chr9 1788186 1793256 -140478188 - L1PA4 LINE L1 0 6155 1081 578 178 0 0 chr9 1793224 1793325 -140478119 - L1P3 LINE L1 -6351 110 10 * 44 70 0 0 chr9 1793471 1793557 -140477887 + AT_rich Low_complexity Low_complexity 1 86 0 21 0 0 0 chr9 1794307 1794328 -140477116 + AT_rich Low_complexity Low_complexity 1 21 0 2661 286 120 15 chr9 1794583 1795828 -140475616 + L2 LINE L2 1378 2752 -562 698 270 177 32 chr9 1796048 1796455 -140474989 + L2 LINE L2 2848 3313 0 1307 184 46 158 chr9 1797692 1798218 -140473226 - MLT1C LTR MaLR 0 467 1 518 321 29 24 chr9 1798935 1799181 -140472263 + MIR SINE MIR 2 248 -14 236 178 0 0 chr9 1800246 1800291 -140471153 - MADE1 DNA Mariner -6 74 30 2385 146 56 15 chr9 1800372 1800783 -140470661 + MSTA LTR MaLR 1 428 0 231 236 131 75 chr9 1801230 1801496 -140469948 + LTR16C LTR ERVL 163 476 -15 230 309 52 109 chr9 1801619 1802039 -140469405 + L2 LINE L2 2869 3264 -8 2086 110 40 3 chr9 1803352 1803651 -140467793 - AluSx SINE Alu -2 310 1 2235 161 32 19 chr9 1803667 1804138 -140467306 - L1MB7 LINE L1 -9 6175 5699 270 254 0 0 chr9 1806917 1806976 -140464468 + MIR SINE MIR 93 151 -111 309 282 10 58 chr9 1807901 1808004 -140463440 + MIR3 SINE MIR 90 187 -21 321 253 69 11 chr9 1808749 1808836 -140462608 - MIR SINE MIR -142 120 29 1009 225 11 91 chr9 1809906 1810280 -140461164 + MLT2B1 LTR ERVL 1 344 -176 1811 209 45 5 chr9 1810292 1810818 -140460626 + LTR69 LTR ERVL 1 588 0 584 176 0 135 chr9 1810818 1811011 -140460433 + MLT2B1 LTR ERVL 352 518 -2 500 250 108 44 chr9 1811148 1811352 -140460092 - MLT1C LTR MaLR 0 467 251 5996 176 94 75 chr9 1811357 1812581 -140458863 + L1MC3 LINE L1 5863 7219 -566 230 264 33 33 chr9 1812581 1812672 -140458772 + MLT1F1 LTR MaLR 35 125 -442 5996 176 94 75 chr9 1812672 1813053 -140458391 + L1MC3 LINE L1 7219 7591 -194 862 174 60 0 chr9 1813056 1813240 -140458204 + L1MC2 LINE L1 6137 6331 -13 604 248 8 0 chr9 1814034 1814159 -140457285 + FLAM_A SINE Alu 1 126 -16 24 0 0 0 chr9 1814177 1814201 -140457243 + AT_rich Low_complexity Low_complexity 1 24 0 321 169 17 0 chr9 1814448 1814507 -140456937 - L1MB7 LINE L1 -445 5721 5662 669 70 85 4 chr9 1814507 1814779 -140456665 + (TA)n Simple_repeat Simple_repeat 1 293 0 206 108 92 15 chr9 1814780 1814845 -140456599 + (TTATA)n Simple_repeat Simple_repeat 2 71 0 627 96 39 34 chr9 1814849 1815027 -140456417 + (TATAA)n Simple_repeat Simple_repeat 1 179 0 188 35 35 0 chr9 1815047 1815076 -140456368 + (TTATA)n Simple_repeat Simple_repeat 5 34 0 186 98 59 0 chr9 1815185 1815236 -140456208 + (TA)n Simple_repeat Simple_repeat 1 54 0 63 14 0 0 chr9 1815236 1815306 -140456138 + AT_rich Low_complexity Low_complexity 1 70 0 538 96 45 39 chr9 1815306 1815484 -140455960 + (TATAA)n Simple_repeat Simple_repeat 1 179 0 352 184 42 24 chr9 1815484 1815652 -140455792 + (TTATA)n Simple_repeat Simple_repeat 2 172 0 5599 244 51 20 chr9 1815652 1815700 -140455744 - L1P3 LINE L1 -470 5702 5657 7290 36 0 0 chr9 1815700 1816661 -140454783 - L1PA5 LINE L1 -15 6139 5172 5599 244 51 20 chr9 1816661 1818959 -140452485 - L1P3 LINE L1 -515 5657 3269 2041 146 0 0 chr9 1819159 1819446 -140451998 + AluSx SINE Alu 1 287 -25 494 154 22 7 chr9 1819446 1819582 -140451862 + (TA)n Simple_repeat Simple_repeat 1 138 0 2739 3 0 3 chr9 1819638 1819940 -140451504 + AluYa5 SINE Alu 1 301 -10 2229 246 14 26 chr9 1820416 1820985 -140450459 - MLT1F1 LTR MaLR -2 565 4 1327 176 12 8 chr9 1821062 1821318 -140450126 - L1 LINE L1 -2316 3830 3574 1818 143 0 3 chr9 1821318 1821605 -140449839 + L1PA15 LINE L1 5876 6161 -4 647 317 45 8 chr9 1822165 1822408 -140449036 + MIR SINE MIR 8 259 -3 35 16 0 49 chr9 1823007 1823068 -140448376 + AT_rich Low_complexity Low_complexity 1 58 0 199 430 52 10 chr9 1823243 1823436 -140448008 - L2 LINE L2 -215 3057 2857 312 343 60 69 chr9 1824566 1824916 -140446528 + HAL1 LINE L1 1 347 -2160 588 271 43 31 chr9 1825202 1825553 -140445891 + HAL1 LINE L1 812 1166 -1341 300 280 8 64 chr9 1825564 1825689 -140445755 + HAL1 LINE L1 1227 1344 -1163 2333 88 0 35 chr9 1827418 1827737 -140443707 - AluSg SINE Alu -2 308 1 216 298 0 0 chr9 1828544 1828601 -140442843 + GA-rich Low_complexity Low_complexity 1 57 0 1957 157 15 3 chr9 1829084 1829422 -140442022 - MER2 DNA MER2_type 0 344 3 318 268 0 57 chr9 1829568 1829691 -140441753 - L3 LINE CR1 -300 1277 1162 503 246 56 56 chr9 1829708 1829850 -140441594 - MER5A DNA MER1_type -21 168 27 540 317 136 40 chr9 1829856 1830386 -140441058 - L3 LINE CR1 -402 1175 595 385 95 0 119 chr9 1830405 1830489 -140440955 - MLT1D LTR MaLR -2 503 430 8551 97 7 8 chr9 1830495 1832444 -140439000 - L1PA7 LINE L1 0 6154 4188 7640 92 12 4 chr9 1832444 1833527 -140437917 - L1PA7 LINE L1 -3413 2733 1642 1424 207 153 26 chr9 1833531 1833918 -140437526 - MLT1D LTR MaLR -69 436 1 302 343 50 34 chr9 1833968 1834159 -140437285 - MIR SINE MIR -50 212 20 486 315 144 5 chr9 1834159 1834381 -140437063 - L3 LINE CR1 -1029 548 296 266 294 102 37 chr9 1835086 1835273 -140436171 + L2 LINE L2 2069 2267 -1047 982 174 35 6 chr9 1835585 1835757 -140435687 - MER5B DNA MER1_type 0 178 2 565 317 66 21 chr9 1836168 1836411 -140435033 + MIR SINE MIR 6 259 -3 184 294 29 29 chr9 1836505 1836573 -140434871 + L2 LINE L2 3244 3311 -2 219 139 0 0 chr9 1837318 1837344 -140434100 + (CA)n Simple_repeat Simple_repeat 2 30 -14 1514 180 115 49 chr9 1837344 1837710 -140433734 + MLT1B LTR MaLR 1 390 0 219 139 0 0 chr9 1837710 1837726 -140433718 + (CA)n Simple_repeat Simple_repeat 29 44 0 2164 111 7 0 chr9 1837943 1838231 -140433213 + AluSx SINE Alu 1 290 -22 28 29 0 0 chr9 1838231 1838266 -140433178 + AT_rich Low_complexity Low_complexity 1 35 0 480 302 135 14 chr9 1838549 1838771 -140432673 - MIR SINE MIR -3 259 11 5011 158 66 33 chr9 1839166 1839321 -140432123 + L1MC3 LINE L1 6709 6857 -928 225 0 0 0 chr9 1839321 1839346 -140432098 + (CA)n Simple_repeat Simple_repeat 2 26 0 5011 158 66 33 chr9 1839346 1840232 -140431212 + L1MC3 LINE L1 6857 7785 0 872 296 51 12 chr9 1840737 1841161 -140430283 - LTR16B LTR ERVL 0 464 1 293 109 0 0 chr9 1841829 1841875 -140429569 + MADE1 DNA Mariner 1 46 -34 268 179 0 71 chr9 1844268 1844324 -140427120 + L3 LINE CR1 1524 1575 -2 2156 117 0 0 chr9 1844533 1844816 -140426628 + AluSx SINE Alu 1 283 -29 1031 294 40 62 chr9 1844955 1845377 -140426067 - MER115 DNA AcHobo -271 422 10 268 380 23 8 chr9 1845954 1846083 -140425361 - MIR SINE MIR -62 146 16 253 253 11 46 chr9 1846160 1846247 -140425197 + L2 LINE L2 3229 3312 -1 256 247 101 0 chr9 1846935 1847024 -140424420 - MER113 DNA MER1_type? -420 101 4 395 277 107 0 chr9 1847028 1847140 -140424304 - MIR3 SINE MIR -49 159 36 267 306 0 0 chr9 1847405 1847497 -140423947 - MIR SINE MIR -62 146 66 321 251 156 52 chr9 1848241 1848296 -140423148 - MIR SINE MIR -18 244 196 1774 171 72 93 chr9 1848296 1848771 -140422673 - MLT1C LTR MaLR 0 467 3 321 251 156 52 chr9 1848771 1848926 -140422518 - MIR SINE MIR -66 196 12 798 253 30 47 chr9 1849052 1849147 -140422297 - MIR SINE MIR -8 254 159 1929 113 49 7 chr9 1849147 1849431 -140422013 - AluSx SINE Alu -16 296 1 798 253 30 47 chr9 1849431 1849568 -140421876 - MIR SINE MIR -103 159 26 576 232 99 72 chr9 1850863 1851072 -140420372 - MER102b DNA MER1_type -1093 335 116 468 0 0 0 chr9 1851072 1851124 -140420320 + (TG)n Simple_repeat Simple_repeat 2 53 0 576 232 99 72 chr9 1851124 1851177 -140420267 - MER102b DNA MER1_type -1312 116 66 356 198 214 57 chr9 1851191 1851383 -140420061 - MLT1H LTR MaLR -7 548 327 427 164 0 0 chr9 1851757 1851830 -140419614 + AluS SINE Alu 2 74 -238 550 275 38 30 chr9 1851848 1852124 -140419320 - MLT1H LTR MaLR -292 257 10 794 269 34 8 chr9 1852193 1852427 -140419017 + MIR SINE MIR 7 246 -16 1834 151 12 107 chr9 1852439 1852870 -140418574 - MLT1B LTR MaLR 0 390 1 315 280 27 13 chr9 1852956 1853106 -140418338 + (TA)n Simple_repeat Simple_repeat 2 153 0 1811 203 29 29 chr9 1853927 1854301 -140417143 + MLT1A2 LTR MaLR 1 374 0 668 280 114 4 chr9 1854626 1854862 -140416582 + MIR SINE MIR 1 262 0 353 316 186 0 chr9 1856601 1856816 -140414628 + MLT1L LTR MaLR 90 344 -271 2260 122 21 24 chr9 1857174 1857510 -140413934 - MER1B DNA MER1_type 0 337 3 4186 69 19 4 chr9 1857798 1858321 -140413123 + L1PA7 LINE L1 5624 6154 0 507 191 9 45 chr9 1858604 1858714 -140412730 + MER97b DNA MER1_type? 74 179 -874 2245 110 0 7 chr9 1859143 1859444 -140412000 + AluSx SINE Alu 1 299 -13 643 286 44 15 chr9 1859446 1859649 -140411795 + MLT1L LTR MaLR 394 602 -13 202 235 12 141 chr9 1860094 1860179 -140411265 - L2 LINE L2 -3 3269 3196 23 0 0 0 chr9 1860959 1860982 -140410462 + AT_rich Low_complexity Low_complexity 1 23 0 614 147 7 73 chr9 1861051 1861187 -140410257 - L1MB1 LINE L1 -26 6163 6037 276 289 133 16 chr9 1861464 1861592 -140409852 - L3 LINE CR1 -1 1576 1434 2535 175 17 7 chr9 1861681 1862103 -140409341 + MSTB LTR MaLR 1 426 0 2306 83 0 51 chr9 1862118 1862430 -140409014 + AluSc SINE Alu 1 296 -13 8357 189 41 22 chr9 1862431 1864047 -140407397 + MSTB-int LTR MaLR 6 1651 0 2228 188 57 5 chr9 1864047 1864452 -140406992 + MSTB LTR MaLR 1 426 0 798 69 0 0 chr9 1864487 1864589 -140406855 - L1PB1 LINE L1 0 6151 6050 257 274 0 14 chr9 1864595 1864668 -140406776 - L3 LINE CR1 -292 1285 1214 293 269 146 23 chr9 1865285 1865415 -140406029 - L3 LINE CR1 -426 1151 1006 900 316 39 31 chr9 1866197 1866612 -140404832 - LTR16C LTR ERVL -1 490 73 724 284 91 12 chr9 1867100 1867343 -140404101 + MIR SINE MIR 1 262 0 6351 216 52 28 chr9 1867793 1869033 -140402411 + L1MA5 LINE L1 13 1222 -5986 2091 58 0 0 chr9 1869033 1869276 -140402168 - L1PA5 LINE L1 0 6154 5912 6351 216 52 28 chr9 1869276 1869421 -140402023 + L1MA5 LINE L1 1222 1362 -5846 276 30 0 0 chr9 1869421 1869454 -140401990 + (CA)n Simple_repeat Simple_repeat 2 34 0 6351 216 52 28 chr9 1869454 1869821 -140401623 + L1MA5 LINE L1 1362 1719 -5489 2240 120 0 3 chr9 1869821 1870130 -140401314 + AluSx SINE Alu 1 308 -4 6351 216 52 28 chr9 1870130 1871261 -140400183 + L1MA5 LINE L1 1719 3845 -3363 * 25807 74 12 2 chr9 1871253 1875494 -140395950 + L1PA6 LINE L1 1872 6154 0 234 308 77 19 chr9 1875522 1875678 -140395766 + L1ME4a LINE L1 5956 6120 -1 2418 190 57 17 chr9 1875743 1876217 -140395227 + MER68 LTR ERV1 1 493 -69 6997 176 54 25 chr9 1876217 1879594 -140391850 + L1MA5 LINE L1 3822 7357 -5 1955 143 0 22 chr9 1879618 1879932 -140391512 + AluSx SINE Alu 1 307 -5 211 289 19 39 chr9 1880907 1881011 -140390433 + MIR3 SINE MIR 99 200 -8 237 255 170 21 chr9 1881111 1881205 -140390239 - L2 LINE L2 -5 3267 3160 1075 216 51 51 chr9 1883369 1883613 -140387831 + L1ME1 LINE L1 5753 5999 -167 507 261 18 0 chr9 1883613 1883724 -140387720 - MER81 DNA DNA 0 114 2 1075 216 51 51 chr9 1883724 1883775 -140387669 + L1ME1 LINE L1 5998 6048 -118 303 121 0 52 chr9 1883791 1883849 -140387595 + L1MB7 LINE L1 6113 6167 -17 256 280 32 21 chr9 1883880 1883973 -140387471 + L2 LINE L2 3139 3232 -40 214 268 85 78 chr9 1884173 1884326 -140387118 - MER5A DNA MER1_type 0 189 36 * 269 379 7 7 chr9 1884192 1884337 -140387107 + MER5B DNA MER1_type 21 165 -13 280 193 72 60 chr9 1884712 1884795 -140386649 + MIR3 SINE MIR 118 201 -7 2054 129 0 10 chr9 1885190 1885493 -140385951 + AluSx SINE Alu 1 300 -12 2157 149 10 72 chr9 1885676 1886092 -140385352 - MLT1B LTR MaLR 0 390 1 226 258 161 32 chr9 1887243 1887367 -140384077 + MIR SINE MIR 122 261 -1 457 268 67 31 chr9 1887803 1887997 -140383447 - MIR SINE MIR -49 213 13 2288 107 0 3 chr9 1888614 1888914 -140382530 - AluSp SINE Alu -14 299 1 607 124 0 11 chr9 1888914 1889003 -140382441 - AluSc SINE Alu -5 304 217 293 370 62 7 chr9 1890293 1890439 -140381005 + L2 LINE L2 3117 3270 -2 717 309 34 27 chr9 1890576 1890838 -140380606 - LTR16A LTR ERVL -170 280 17 2181 271 79 49 chr9 1891004 1892097 -140379347 - L2 LINE L2 -4 3309 2175 212 204 0 37 chr9 1892334 1892388 -140379056 - L2 LINE L2 -1143 2171 2120 457 252 109 41 chr9 1892628 1892952 -140378492 + MLT1I LTR MaLR 53 542 0 291 395 7 7 chr9 1892975 1893122 -140378322 + MIR SINE MIR 111 257 -5 234 337 50 39 chr9 1894804 1895086 -140376358 - LTR16C LTR ERVL -3 488 204 2221 171 25 3 chr9 1895111 1895468 -140375976 + MLT1A1 LTR MaLR 1 365 0 21 57 0 0 chr9 1895897 1895932 -140375512 + AT_rich Low_complexity Low_complexity 1 35 0 228 189 57 19 chr9 1895990 1896096 -140375348 + (TA)n Simple_repeat Simple_repeat 1 110 0 204 188 0 0 chr9 1896186 1896218 -140375226 - L2 LINE L2 -71 3242 3211 314 248 165 34 chr9 1896237 1896443 -140375001 - MARNA DNA Mariner -149 437 205 306 293 40 0 chr9 1896979 1897054 -140374390 - MIR SINE MIR -61 147 70 236 160 0 40 chr9 1897506 1897556 -140373888 - L2 LINE L2 -8 3305 3258 257 325 26 0 chr9 1897563 1897677 -140373767 - L1ME LINE L1 -254 5867 5751 186 389 11 0 chr9 1897892 1897982 -140373462 - L2 LINE L2 -2 3270 3180 2434 192 56 29 chr9 1898153 1898675 -140372769 - MLT1F LTR MaLR 0 542 7 269 274 116 0 chr9 1899595 1899690 -140371754 + MLT1K LTR MaLR 373 478 -110 1880 156 158 24 chr9 1899899 1900309 -140371135 + MLT1C LTR MaLR 3 467 0 195 69 0 0 chr9 1900432 1900461 -140370983 + (CA)n Simple_repeat Simple_repeat 2 30 0 328 225 48 33 chr9 1900483 1900658 -140370786 - L1ME3A LINE L1 -231 5939 5764 588 276 133 56 chr9 1901337 1901728 -140369716 + MLT1L LTR MaLR 195 615 0 195 304 0 0 chr9 1901858 1901904 -140369540 - MIR SINE MIR -69 139 94 180 111 0 0 chr9 1902296 1902323 -140369121 + (T)n Simple_repeat Simple_repeat 1 27 0 180 279 58 35 chr9 1904208 1904294 -140367150 + MIR3 SINE MIR 111 198 -10 2131 128 0 19 chr9 1905390 1905703 -140365741 - AluSg SINE Alu -3 307 1 235 271 86 0 chr9 1906754 1906824 -140364620 - MIR3 SINE MIR -15 193 118 310 286 22 22 chr9 1907014 1907105 -140364339 - HAL1 LINE L1 -172 2335 2245 21 57 0 0 chr9 1907338 1907373 -140364071 + AT_rich Low_complexity Low_complexity 1 35 0 443 269 42 12 chr9 1907856 1908023 -140363421 - LTR33A LTR ERVL -2 521 350 247 309 41 10 chr9 1908193 1908290 -140363154 - LTR33A LTR ERVL -365 158 59 575 235 55 67 chr9 1908445 1908700 -140362744 - HAL1 LINE L1 -803 1704 1453 195 114 0 0 chr9 1908702 1908737 -140362707 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 506 289 29 46 chr9 1908752 1908991 -140362453 + L2 LINE L2 2521 2755 -559 350 253 84 0 chr9 1908991 1909074 -140362370 - MLT1H LTR MaLR 0 549 460 227 200 0 147 chr9 1909243 1909318 -140362126 - MLT1H LTR MaLR -288 261 198 321 284 91 57 chr9 1909661 1909957 -140361487 + HAL1b LINE L1 219 524 -824 8605 221 20 16 chr9 1910138 1910574 -140360870 + L1 LINE L1 2605 3038 -3108 2370 86 3 0 chr9 1910574 1910876 -140360568 + AluY SINE Alu 1 303 -8 8605 221 20 16 chr9 1910876 1912521 -140358923 + L1 LINE L1 3038 4693 -1453 5277 149 50 3 chr9 1912521 1913520 -140357924 + L1PA16 LINE L1 5116 6157 -9 21 36 0 0 chr9 1913520 1913548 -140357896 + AT_rich Low_complexity Low_complexity 1 28 0 2003 173 17 11 chr9 1913697 1914049 -140357395 + THE1A LTR MaLR 2 355 0 12165 101 14 0 chr9 1914049 1915607 -140355837 + THE1A-int LTR MaLR 1 1580 0 2203 153 14 11 chr9 1915607 1915961 -140355483 + THE1A LTR MaLR 1 355 0 2068 133 0 0 chr9 1915998 1916306 -140355138 - AluSc SINE Alu 0 308 1 195 114 0 0 chr9 1916451 1916486 -140354958 + (TTCA)n Simple_repeat Simple_repeat 4 38 0 257 315 14 0 chr9 1916492 1916565 -140354879 - L2 LINE L2 -4 3309 3236 321 26 0 0 chr9 1916710 1916749 -140354695 + U5 snRNA snRNA 6 44 -72 1000 270 90 31 chr9 1917009 1917431 -140354013 - MLT1J2 LTR MaLR 0 450 4 2118 143 71 13 chr9 1918574 1918953 -140352491 - L1MB3 LINE L1 -8 6175 5775 1671 56 0 0 chr9 1919039 1919234 -140352210 + L1PA11 LINE L1 5980 6174 0 656 297 78 47 chr9 1919279 1919687 -140351757 - LTR16C LTR ERVL -10 481 61 880 291 80 40 chr9 1919804 1920179 -140351265 - MLT1J2 LTR MaLR -57 393 4 484 251 64 35 chr9 1920739 1920811 -140350633 + L1ME LINE L1 5579 5647 -474 940 284 219 7 chr9 1920811 1921241 -140350203 + LTR33 LTR ERVL 1 521 0 484 251 64 35 chr9 1921241 1921339 -140350105 + L1ME LINE L1 5647 5754 -367 183 129 0 0 chr9 1921637 1921668 -140349776 + (A)n Simple_repeat Simple_repeat 1 31 0 240 281 231 0 chr9 1921811 1921932 -140349512 - MIR SINE MIR -8 254 106 669 283 197 49 chr9 1922160 1922726 -140348718 - L2 LINE L2 -4 3309 2669 189 0 0 0 chr9 1922813 1922834 -140348610 + (A)n Simple_repeat Simple_repeat 1 21 0 1397 224 131 57 chr9 1922861 1923366 -140348078 - MLT1F LTR MaLR 0 542 1 2593 102 5 8 chr9 2025887 2026261 -140245183 + THE1C LTR MaLR 3 375 0 413 267 10 0 chr9 2027580 2027681 -140243763 + MLT1E2 LTR MaLR 518 619 -7 2200 122 0 10 chr9 2028238 2028542 -140242902 + AluSx SINE Alu 2 302 -10 220 158 35 35 chr9 2030704 2030761 -140240683 + A-rich Low_complexity Low_complexity 2 58 0 875 315 99 19 chr9 2031974 2032396 -140239048 - L2 LINE L2 0 3313 2858 241 338 151 0 chr9 2033851 2033990 -140237454 + MER91A DNA MER1_type 3 162 -34 701 307 48 35 chr9 2035934 2036331 -140235113 - L1MC5 LINE L1 -531 7430 7029 2258 91 35 0 chr9 2036546 2036832 -140234612 - AluSq SINE Alu -17 296 1 315 181 145 12 chr9 2036995 2037078 -140234366 - L1MC4 LINE L1 -136 7906 7813 498 327 77 4 chr9 2039775 2040017 -140231427 + MIR SINE MIR 3 261 -1 2182 128 3 3 chr9 2040152 2040458 -140230986 - AluSx SINE Alu -6 306 1 670 261 44 32 chr9 2041412 2041661 -140229783 + MIR SINE MIR 6 257 -5 204 329 92 40 chr9 2041668 2041820 -140229624 - L2 LINE L2 -8 3264 3105 2858 13 0 3 chr9 2042128 2042440 -140229004 - AluYa5 SINE Alu 0 311 1 264 281 135 52 chr9 2042452 2042703 -140228741 - L2 LINE L2 -248 3024 2753 248 137 0 20 chr9 2043219 2043270 -140228174 + LTR33A LTR ERVL 4 53 -470 22 0 0 0 chr9 2043290 2043312 -140228132 + AT_rich Low_complexity Low_complexity 1 22 0 559 301 56 10 chr9 2043313 2043509 -140227935 - MIR SINE MIR -56 206 2 270 344 11 11 chr9 2043990 2044083 -140227361 + MIR3 SINE MIR 67 159 -49 213 39 0 0 chr9 2044246 2044272 -140227172 + (TG)n Simple_repeat Simple_repeat 1 26 0 403 326 7 14 chr9 2044283 2044421 -140227023 - MIR SINE MIR -98 164 28 209 188 0 75 chr9 2045078 2045158 -140226286 + (TATATG)n Simple_repeat Simple_repeat 5 78 0 1588 175 58 7 chr9 2045192 2045483 -140225961 - AluJo SINE Alu -1 311 6 2446 74 0 3 chr9 2045579 2045875 -140225569 - AluY SINE Alu -16 295 1 686 301 122 34 chr9 2046143 2046611 -140224833 - LTR33A LTR ERVL -9 514 6 3585 39 15 2 chr9 2046671 2047130 -140224314 + L1PA5 LINE L1 5686 6150 -4 251 188 42 0 chr9 2047398 2047446 -140223998 + MIR SINE MIR 94 143 -119 869 237 54 0 chr9 2051060 2051246 -140220198 + Tigger7 DNA MER2_type 7 202 -2285 1430 216 96 35 chr9 2053285 2053775 -140217669 - MLT2B1 LTR ERVL 0 520 1 261 338 42 0 chr9 2054253 2054395 -140217049 + MER5A DNA MER1_type 40 187 -2 306 73 0 0 chr9 2054409 2054450 -140216994 + (TCCA)n Simple_repeat Simple_repeat 3 43 0 340 327 7 4 chr9 2055221 2055510 -140215934 + (CA)n Simple_repeat Simple_repeat 1 290 0 238 216 98 49 chr9 2056294 2056396 -140215048 + LTR16C LTR ERVL 385 491 0 247 286 36 0 chr9 2056982 2057066 -140214378 - MIR SINE MIR -70 138 52 376 321 47 21 chr9 2058552 2058745 -140212699 - L1MEd LINE L1 -5920 199 2 239 312 128 0 chr9 2058863 2058988 -140212456 - L1M4 LINE L1 -1988 4158 4018 7596 17 0 0 chr9 2058994 2060329 -140211115 - L1PA3 LINE L1 0 6155 4821 6117 38 3 0 chr9 2060329 2061103 -140210341 + L1P LINE L1 3790 4565 -1581 220 320 70 55 chr9 2062485 2062613 -140208831 - L2 LINE L2 -1 3271 3142 1184 282 73 18 chr9 2063579 2064072 -140207372 - LTR33 LTR ERVL 0 521 2 391 252 137 33 chr9 2065145 2065374 -140206070 - MLT1G3 LTR MaLR -171 371 135 276 313 172 0 chr9 2066036 2066164 -140205280 + MIR SINE MIR 57 206 -56 583 203 0 34 chr9 2066226 2066344 -140205100 - MER58B DNA MER1_type -1 340 227 249 366 16 52 chr9 2067672 2067866 -140203578 + MIR SINE MIR 6 192 -70 930 247 113 53 chr9 2068145 2068367 -140203077 + MLT1L LTR MaLR 1 208 -303 850 252 61 0 chr9 2068367 2068613 -140202831 - MIR SINE MIR 0 262 2 930 247 113 53 chr9 2068613 2068946 -140202498 + MLT1L LTR MaLR 208 507 -4 204 313 38 12 chr9 2069039 2069119 -140202325 + L3 LINE CR1 1480 1561 -16 961 135 7 0 chr9 2069461 2069609 -140201835 + THE1B LTR MaLR 216 364 0 10081 98 37 40 chr9 2069609 2071194 -140200250 + THE1B-int LTR MaLR 1 1580 0 2616 110 0 0 chr9 2071194 2071558 -140199886 + THE1B LTR MaLR 1 364 0 303 378 58 29 chr9 2071568 2071809 -140199635 + L1 LINE L1 4531 4778 -1368 2550 66 0 3 chr9 2071996 2072297 -140199147 + AluY SINE Alu 2 301 -10 431 241 186 0 chr9 2072458 2072603 -140198841 + MER5A DNA MER1_type 10 181 -8 2316 235 51 46 chr9 2072840 2073594 -140197850 - L1M4 LINE L1 -1778 4368 3608 1366 171 98 29 chr9 2073594 2073869 -140197575 - AluJb SINE Alu -18 294 1 2316 235 51 46 chr9 2073869 2073880 -140197564 - L1M4 LINE L1 -2538 3608 3599 673 249 80 20 chr9 2073875 2074076 -140197368 - L1MD2 LINE L1 -16 6343 6131 * 255 197 237 0 chr9 2074318 2074394 -140197050 - L1MD2 LINE L1 -543 5699 5606 * 478 242 113 36 chr9 2074393 2074587 -140196857 - L1M4 LINE L1 -2523 3623 3415 504 336 195 23 chr9 2075205 2076039 -140195405 + L2 LINE L2 1167 2144 -1170 5256 88 11 49 chr9 2076096 2077128 -140194316 + L1MA3 LINE L1 4182 6287 -18 5256 102 13 45 chr9 2077128 2077857 -140193587 + L1MA3 LINE L1 5423 6119 -186 2618 64 0 10 chr9 2077857 2078171 -140193273 + AluY SINE Alu 1 311 0 5256 102 13 45 chr9 2078171 2078352 -140193092 + L1MA3 LINE L1 6119 6304 -1 5256 88 11 49 chr9 2078352 2078370 -140193074 + L1MA3 LINE L1 6287 6304 -1 25 0 0 0 chr9 2078392 2078417 -140193027 + AT_rich Low_complexity Low_complexity 1 25 0 25 0 0 0 chr9 2078583 2078608 -140192836 + AT_rich Low_complexity Low_complexity 1 25 0 1020 160 0 0 chr9 2078608 2078752 -140192692 - AluSg/x SINE Alu -23 287 144 2507 79 0 3 chr9 2081334 2081638 -140189806 + AluY SINE Alu 1 303 -8 1135 146 0 6 chr9 2081638 2081809 -140189635 + AluSp SINE Alu 134 303 -10 276 165 21 62 chr9 2082260 2082357 -140189087 + (CAGAGA)n Simple_repeat Simple_repeat 6 98 0 2383 88 0 0 chr9 2091066 2091363 -140180081 + AluSg SINE Alu 1 297 -13 23 54 0 0 chr9 2091379 2091416 -140180028 + AT_rich Low_complexity Low_complexity 1 37 0 1974 141 39 33 chr9 2091440 2091802 -140179642 - THE1B LTR MaLR 0 364 1 311 0 26 0 chr9 2092773 2092812 -140178632 + (TG)n Simple_repeat Simple_repeat 2 41 0 604 292 23 88 chr9 2093364 2093795 -140177649 + L2 LINE L2 2649 3054 -218 940 215 21 0 chr9 2093804 2093990 -140177454 - MER58A DNA MER1_type 0 224 35 295 241 38 13 chr9 2094119 2094198 -140177246 + L2 LINE L2 3225 3305 -8 237 65 0 0 chr9 2094273 2094304 -140177140 + (TG)n Simple_repeat Simple_repeat 1 31 0 227 79 26 0 chr9 2094304 2094342 -140177102 + (GA)n Simple_repeat Simple_repeat 2 40 0 1869 203 29 61 chr9 2094468 2094738 -140176706 + L1MA9 LINE L1 5832 6109 -203 2632 49 0 3 chr9 2094738 2095042 -140176402 + AluY SINE Alu 1 303 -8 1869 203 29 61 chr9 2095042 2095217 -140176227 + L1MA9 LINE L1 6109 6262 -50 1854 166 0 7 chr9 2095217 2095506 -140175938 - AluJo SINE Alu -25 287 1 1869 203 29 61 chr9 2095506 2095551 -140175893 + L1MA9 LINE L1 6262 6307 -5 21 36 0 0 chr9 2095560 2095588 -140175856 + AT_rich Low_complexity Low_complexity 1 28 0 456 312 133 48 chr9 2095697 2096072 -140175372 - MLT1K LTR MaLR -33 555 149 245 279 58 0 chr9 2099271 2099375 -140172069 + MIR SINE MIR 29 138 -124 185 189 0 0 chr9 2099376 2099413 -140172031 + L2 LINE L2 3213 3249 -23 236 241 69 103 chr9 2100072 2100127 -140171317 - MLT1C LTR MaLR -15 452 397 1961 66 0 0 chr9 2100127 2100383 -140171061 + L1PA5 LINE L1 5898 6153 -1 236 241 69 103 chr9 2100383 2100501 -140170943 - MLT1C LTR MaLR -70 397 285 231 235 69 39 chr9 2100548 2100650 -140170794 - MLT1C LTR MaLR -273 194 90 1068 222 28 131 chr9 2101585 2102044 -140169400 - MLT2D LTR ERVL 0 414 3 538 26 26 93 chr9 2102166 2102359 -140169085 + (TA)n Simple_repeat Simple_repeat 1 180 0 324 252 52 102 chr9 2102363 2102736 -140168708 - L1MC5 LINE L1 -204 8037 1980 440 169 0 0 chr9 2103300 2103377 -140168067 + MLT1F1 LTR MaLR 491 567 0 2235 78 58 3 chr9 2104826 2105121 -140166323 + AluY SINE Alu 1 311 0 314 251 115 20 chr9 2105275 2105393 -140166051 - MIR SINE MIR -46 162 33 2206 246 46 26 chr9 2107345 2107477 -140163967 + MER67C LTR ERV1 1 129 -581 2179 103 13 3 chr9 2107477 2107779 -140163665 - AluSc SINE Alu -4 305 1 2206 246 46 26 chr9 2107779 2108342 -140163102 + MER67C LTR ERV1 129 710 0 668 195 157 5 chr9 2109389 2109599 -140161845 + MLT1D LTR MaLR 107 348 -157 234 245 28 56 chr9 2111826 2111969 -140159475 + CT-rich Low_complexity Low_complexity 3 141 0 208 239 15 15 chr9 2113281 2113348 -140158096 + CT-rich Low_complexity Low_complexity 1 67 0 2274 116 7 3 chr9 2113722 2114137 -140157307 + AluSq SINE Alu 1 416 0 1072 101 12 0 chr9 2114150 2114319 -140157125 + (GAAA)n Simple_repeat Simple_repeat 1 171 0 288 0 0 0 chr9 2114323 2114355 -140157089 + (GGAA)n Simple_repeat Simple_repeat 2 33 0 603 315 0 28 chr9 2115445 2115623 -140155821 + MLT1G1 LTR MaLR 1 173 -422 744 269 14 5 chr9 2115768 2115980 -140155464 + MLT1G1 LTR MaLR 176 389 -206 2397 261 92 8 chr9 2119978 2120730 -140150714 - MER21B LTR ERV1 0 863 49 292 294 0 0 chr9 2120741 2120809 -140150635 - MER21B LTR ERV1 -777 86 19 317 244 37 0 chr9 2120922 2121004 -140150440 + MLT1E2 LTR MaLR 124 208 -418 261 259 0 0 chr9 2121326 2121384 -140150060 + MARNA DNA Mariner 436 493 -93 351 0 0 0 chr9 2123025 2123064 -140148380 + (TTA)n Simple_repeat Simple_repeat 2 40 0 412 234 43 0 chr9 2123189 2123283 -140148161 + MIR SINE MIR 87 184 -78 663 241 0 0 chr9 2123301 2123438 -140148006 + L1MD1 LINE L1 5599 5735 -507 1702 221 48 0 chr9 2123441 2123792 -140147652 - MER74A LTR ERVL 0 558 191 3370 137 101 51 chr9 2123792 2124594 -140146850 + MER21A LTR ERV1 1 915 -16 738 184 61 31 chr9 2124635 2124798 -140146646 - MER74A LTR ERVL -390 168 1 507 138 43 11 chr9 2124802 2124896 -140146548 + L1MD1 LINE L1 5764 5860 -499 471 233 153 25 chr9 2124907 2125070 -140146374 + L1MD1 LINE L1 5992 6175 -67 5221 167 58 28 chr9 2125175 2125627 -140145817 - L1M2 LINE L1 -819 5493 5056 1705 27 0 0 chr9 2125627 2125811 -140145633 - AluY SINE Alu -127 184 1 5221 167 58 28 chr9 2125811 2125901 -140145543 - L1M2 LINE L1 -1256 5056 4970 2281 171 17 2 chr9 2125901 2126323 -140145121 - MSTC LTR MaLR 0 428 1 5221 167 58 28 chr9 2126323 2126775 -140144669 - L1M2 LINE L1 -1342 4970 4533 2246 113 7 0 chr9 2126775 2127076 -140144368 - AluSq SINE Alu -10 303 1 5221 167 58 28 chr9 2127076 2127452 -140143992 - L1M2 LINE L1 -1779 4533 3998 310 275 50 33 chr9 2127606 2127726 -140143718 - L1MEd LINE L1 -5298 821 700 33637 52 6 3 chr9 2127902 2132305 -140139139 - L1P LINE L1 -1316 4830 414 198 24 24 49 chr9 2132379 2132420 -140139024 + (TA)n Simple_repeat Simple_repeat 1 40 0 440 302 9 0 chr9 2132553 2132659 -140138785 + MIR SINE MIR 45 151 -111 461 233 74 5 chr9 2132660 2132823 -140138621 + MER63 DNA MER1_type 1 1656 -32 387 282 0 27 chr9 2132825 2132935 -140138509 + MIR SINE MIR 156 262 0 231 190 0 0 chr9 2133091 2133149 -140138295 + T-rich Low_complexity Low_complexity 1 58 0 2815 169 5 46 chr9 2134026 2134616 -140136828 - L1MB3 LINE L1 -177 6006 5441 240 111 0 0 chr9 2138348 2138384 -140133060 + (A)n Simple_repeat Simple_repeat 1 36 0 667 270 61 22 chr9 2139384 2139614 -140131830 - MIR SINE MIR -16 246 8 241 322 34 93 chr9 2142509 2142832 -140128612 - L2 LINE L2 -7 3265 2962 487 264 31 8 chr9 2143899 2144028 -140127416 + MLT1I LTR MaLR 104 235 -174 288 0 0 0 chr9 2144405 2144437 -140127007 + (A)n Simple_repeat Simple_repeat 1 32 0 332 358 129 29 chr9 2144691 2144970 -140126474 + L2 LINE L2 2966 3272 0 435 331 121 30 chr9 2145333 2145839 -140125605 + L1ME3 LINE L1 5341 5915 -255 2426 78 0 0 chr9 2145858 2146152 -140125292 - AluSg SINE Alu -15 295 2 200 216 59 0 chr9 2146584 2146635 -140124809 - L2 LINE L2 -2 3311 3258 189 300 133 11 chr9 2146836 2146926 -140124518 - MIR SINE MIR -25 237 137 430 298 34 0 chr9 2147053 2147209 -140124235 - MER20B DNA MER1_type -23 196 30 199 290 93 65 chr9 2150247 2150354 -140121090 - L2 LINE L2 -4 3309 3200 1950 166 132 3 chr9 2150453 2150832 -140120612 + MSTA LTR MaLR 1 428 0 253 363 98 0 chr9 2150966 2151068 -140120376 - MIR3 SINE MIR -3 205 94 520 216 11 58 chr9 2151788 2151978 -140119466 - L1MDb LINE L1 -2125 3955 3775 483 167 79 18 chr9 2151975 2152089 -140119355 - L1MB3 LINE L1 -2 6181 6061 * 999 156 6 6 chr9 2152129 2152309 -140119135 - L1MB3 LINE L1 -89 6094 5915 3652 239 60 19 chr9 2152310 2152656 -140118788 - L1MDb LINE L1 -2292 3788 3458 2072 134 0 0 chr9 2152656 2152946 -140118498 + AluSx SINE Alu 3 292 -20 3652 239 60 19 chr9 2152946 2153790 -140117654 - L1MDb LINE L1 -2622 3458 2549 576 268 40 30 chr9 2153772 2154192 -140117252 - L1MDb LINE L1 -5178 892 463 * 250 277 89 9 chr9 2154332 2154444 -140117000 - L1MDb LINE L1 -5683 387 267 2549 44 0 3 chr9 2155236 2155529 -140115915 - AluY SINE Alu -15 296 5 202 333 50 20 chr9 2155666 2155867 -140115577 - L3 LINE CR1 -60 1517 1311 552 260 40 0 chr9 2155920 2156093 -140115351 + MER68 LTR ERV1 1 180 -382 405 200 124 119 chr9 2156128 2156338 -140115106 + MER68 LTR ERV1 351 603 -2 3288 200 64 9 chr9 2157300 2158228 -140113216 + L1M3 LINE L1 4509 5485 -698 186 229 180 16 chr9 2158644 2158766 -140112678 + L2 LINE L2 2910 3051 -262 330 196 0 0 chr9 2158998 2159090 -140112354 + (TGGA)n Simple_repeat Simple_repeat 1 92 0 578 260 25 51 chr9 2160033 2160229 -140111215 + MIR3 SINE MIR 14 204 -4 2430 93 3 6 chr9 2161980 2162292 -140109152 - AluSp SINE Alu -2 311 1 231 36 0 0 chr9 2162355 2162383 -140109061 + (CA)n Simple_repeat Simple_repeat 2 29 0 282 273 52 0 chr9 2162898 2162975 -140108469 + MER5A DNA MER1_type 5 85 -104 232 277 9 9 chr9 2163053 2163165 -140108279 + (CA)n Simple_repeat Simple_repeat 2 113 0 1410 189 0 26 chr9 2163482 2163772 -140107672 + AluJo SINE Alu 25 307 0 262 302 148 16 chr9 2163910 2164099 -140107345 - MIR SINE MIR -26 236 23 663 262 102 44 chr9 2166445 2166789 -140104655 + MLT1B LTR MaLR 1 364 -26 617 264 39 14 chr9 2167227 2167435 -140104009 + MLT1A1 LTR MaLR 153 365 0 237 209 75 0 chr9 2167697 2167764 -140103680 - MLT1J LTR MaLR -341 170 99 27 29 0 0 chr9 2170651 2170685 -140100759 + AT_rich Low_complexity Low_complexity 1 34 0 71 106 0 0 chr9 2170767 2170908 -140100536 + AT_rich Low_complexity Low_complexity 1 141 0 319 258 57 69 chr9 2173939 2174098 -140097346 + MIR SINE MIR 98 254 -8 449 141 0 0 chr9 2174197 2174268 -140097176 - THE1B LTR MaLR 0 375 305 7250 52 2 1 chr9 2174269 2175280 -140096164 + L1PA5 LINE L1 5132 6148 -6 26 0 0 0 chr9 2175514 2175540 -140095904 + AT_rich Low_complexity Low_complexity 1 26 0 1895 117 9 37 chr9 2175540 2175864 -140095580 - THE1B LTR MaLR -49 315 1 314 344 0 0 chr9 2176044 2176134 -140095310 + L1MC4 LINE L1 6614 6703 -1339 306 352 0 0 chr9 2176066 2176154 -140095290 - L1MC4 LINE L1 -1339 6703 6616 * 210 246 0 0 chr9 2176166 2176227 -140095217 + (TA)n Simple_repeat Simple_repeat 1 61 0 353 39 19 0 chr9 2176228 2176280 -140095164 - MLT2A1 LTR ERVL -391 53 1 3054 74 0 7 chr9 2176345 2176358 -140095086 - MLT2A1 LTR ERVL -40 404 392 336 102 0 0 chr9 2176358 2176407 -140095037 + (TG)n Simple_repeat Simple_repeat 2 50 0 3054 74 0 7 chr9 2176407 2176800 -140094644 - MLT2A1 LTR ERVL -52 392 1 1953 159 49 138 chr9 2176800 2177459 -140093985 + LTR8A LTR ERV1 128 727 0 688 231 30 12 chr9 2177736 2177905 -140093539 + MER69A DNA AcHobo 3 174 -3 288 340 50 70 chr9 2178143 2178402 -140093042 + MIR SINE MIR 3 256 -6 387 351 57 19 chr9 2178550 2178812 -140092632 + MLT1J LTR MaLR 153 424 -87 835 191 26 0 chr9 2178825 2178977 -140092467 - MER5A DNA MER1_type -30 159 4 290 205 12 12 chr9 2178980 2179063 -140092381 + MLT1J LTR MaLR 416 498 -13 269 188 0 0 chr9 2179159 2179207 -140092237 - L2 LINE L2 -3 3310 3263 808 176 79 0 chr9 2179394 2179559 -140091885 - MER5B DNA MER1_type 0 178 1 204 210 222 12 chr9 2179570 2179651 -140091793 - MIR SINE MIR -90 118 21 355 292 136 33 chr9 2180046 2180289 -140091155 - L3 LINE CR1 -2 1575 1308 1386 271 61 67 chr9 2180941 2181661 -140089783 - MER21B LTR ERV1 -124 739 24 871 302 120 35 chr9 2182099 2182592 -140088852 - L3 LINE CR1 -78 1499 965 322 242 65 81 chr9 2182878 2183002 -140088442 + MLT1K LTR MaLR 380 501 -87 876 296 95 5 chr9 2183002 2183381 -140088063 - MER95 LTR ERV 0 431 19 581 290 54 67 chr9 2183389 2183720 -140087724 - MER89-int LTR ERV1 -479 7337 7011 404 190 13 0 chr9 2183925 2184004 -140087440 + Tigger5 DNA MER2_type 1 80 -2243 320 217 43 0 chr9 2184004 2184073 -140087371 - Tigger5 DNA MER2_type -5 2318 2247 284 262 0 36 chr9 2184069 2184153 -140087291 + Tigger5 DNA MER2_type 2243 2323 0 * 297 0 0 0 chr9 2185220 2185253 -140086191 + (TTTG)n Simple_repeat Simple_repeat 2 34 0 1501 162 68 54 chr9 2185258 2185536 -140085908 - AluJo SINE Alu -30 282 1 846 299 39 82 chr9 2185780 2187157 -140084287 - MER89-int LTR ERV1 -1390 6147 2017 276 225 87 69 chr9 2187280 2187453 -140083991 - MER89-int LTR ERV1 -1799 3155 2980 2648 138 74 5 chr9 2187495 2187915 -140083529 - LTR47A LTR ERVL 0 452 4 233 69 0 0 chr9 2187915 2187944 -140083500 - LTR47A LTR ERVL -421 31 3 2502 68 3 3 chr9 2189116 2189426 -140082018 - AluY SINE Alu -1 310 1 408 316 13 19 chr9 2189608 2189763 -140081681 - MER89-int LTR ERV1 -5429 1372 1219 5797 141 21 25 chr9 2190056 2190813 -140080631 - L1PA15 LINE L1 -1 6164 5425 1911 149 0 17 chr9 2190813 2191141 -140080303 - AluSg SINE Alu 0 310 1 5797 141 21 25 chr9 2191141 2191549 -140079895 - L1PA15 LINE L1 -740 5425 5017 16585 143 11 26 chr9 2191557 2192802 -140078642 - L1PA10 LINE L1 0 6168 4906 2203 128 0 0 chr9 2192802 2193100 -140078344 + AluSx SINE Alu 1 298 -14 16585 143 11 26 chr9 2193100 2195434 -140076010 - L1PA10 LINE L1 -1262 4906 2640 722 192 0 8 chr9 2195435 2195555 -140075889 - THE1B LTR MaLR -7 357 239 856 314 116 16 chr9 2195586 2196019 -140075425 - L3 LINE CR1 -901 676 201 294 347 5 24 chr9 2196990 2197175 -140074269 + MIR SINE MIR 36 212 -50 1443 179 40 27 chr9 2197794 2198095 -140073349 + AluSx SINE Alu 1 305 -7 3702 147 47 66 chr9 2198309 2198881 -140072563 + LTR8A LTR ERV1 1 557 -170 1687 194 7 13 chr9 2198881 2199191 -140072253 + AluJb SINE Alu 1 308 -4 3702 147 47 66 chr9 2199191 2199359 -140072085 + LTR8A LTR ERV1 557 727 0 1103 228 72 79 chr9 2199663 2200082 -140071362 + L2 LINE L2 2636 3054 -259 1747 219 36 11 chr9 2200082 2200447 -140070997 + MLT1A2 LTR MaLR 1 374 0 1103 228 72 79 chr9 2200447 2200696 -140070748 + L2 LINE L2 3054 3303 -10 504 315 56 41 chr9 2200696 2200862 -140070582 - L1ME LINE L1 -404 5717 5555 1818 179 7 0 chr9 2200862 2201164 -140070280 + AluJb SINE Alu 1 304 -8 504 315 56 41 chr9 2201164 2201510 -140069934 - L1ME LINE L1 -566 5555 5200 289 319 40 36 chr9 2201670 2201918 -140069526 - L1ME LINE L1 -1124 5022 4774 2124 144 0 0 chr9 2202292 2202604 -140068840 - AluSx SINE Alu 0 312 1 2136 188 86 46 chr9 2202793 2202897 -140068547 - LTR49 LTR ERV1 0 595 497 2824 128 36 5 chr9 2202897 2203312 -140068132 + MSTA LTR MaLR 1 428 0 2136 188 86 46 chr9 2203312 2203767 -140067677 - LTR49 LTR ERV1 -98 497 14 2040 127 0 0 chr9 2203767 2204082 -140067362 - AluSx SINE Alu 0 315 1 1990 146 33 0 chr9 2204511 2204813 -140066631 - AluSx SINE Alu 0 312 1 187 41 41 122 chr9 2205140 2205189 -140066255 - MIR3 SINE MIR -32 176 132 2850 198 53 52 chr9 2205218 2205911 -140065533 + LTR8A LTR ERV1 34 727 0 308 236 28 47 chr9 2205950 2206056 -140065388 + L1MC4 LINE L1 7899 8002 -40 1304 171 19 27 chr9 2206199 2206321 -140065123 + MER34B LTR ERV1 1 122 -443 2734 152 130 11 chr9 2206321 2206529 -140064915 + LTR49 LTR ERV1 1 183 -412 249 33 0 0 chr9 2206529 2206559 -140064885 + (CA)n Simple_repeat Simple_repeat 2 31 0 2734 152 130 11 chr9 2206559 2206882 -140064562 + LTR49 LTR ERV1 183 595 0 1304 171 19 27 chr9 2206882 2207016 -140064428 + MER34B LTR ERV1 122 255 -310 2395 151 26 3 chr9 2207018 2207402 -140064042 - MER57A LTR ERV1 -3 400 8 289 91 23 0 chr9 2207403 2207447 -140063997 + MER34B LTR ERV1 251 295 -270 2684 179 33 81 chr9 2207581 2208224 -140063220 - LTR9 LTR ERV1 0 612 1 1537 170 44 11 chr9 2208224 2208494 -140062950 - AluJo SINE Alu -33 279 1 1434 124 21 8 chr9 2208966 2209196 -140062248 + MER34B LTR ERV1 303 535 -30 1438 194 112 57 chr9 2209196 2209635 -140061809 + LTR56 LTR ERV1 1 437 0 2266 191 91 117 chr9 2209782 2210527 -140060917 + LTR8A LTR ERV1 2 727 0 2984 142 47 40 chr9 2210975 2211560 -140059884 - LTR49 LTR ERV1 -3 650 1 2825 159 37 12 chr9 2211560 2212070 -140059374 - MER34C LTR ERV1 -24 561 39 2742 100 47 10 chr9 2212159 2212607 -140058837 + LTR56 LTR ERV1 6 437 0 2187 122 0 3 chr9 2212787 2213091 -140058353 - AluSg SINE Alu -7 303 1 848 229 92 42 chr9 2213185 2213425 -140058019 + MLT1B LTR MaLR 3 254 -136 9677 202 15 18 chr9 2213436 2215886 -140055558 - L1P4 LINE L1 -588 5578 3141 901 261 35 0 chr9 2216029 2216286 -140055158 + Charlie5 DNA MER1_type 2 267 -2345 197 65 32 0 chr9 2216287 2216318 -140055126 + (TTTTA)n Simple_repeat Simple_repeat 4 35 0 683 176 8 25 chr9 2216321 2216440 -140055004 - AluJb SINE Alu -194 118 2 1245 239 25 28 chr9 2216445 2216614 -140054830 + Charlie5 DNA MER1_type 256 425 -2199 1668 150 221 11 chr9 2216614 2216782 -140054662 - MSTA LTR MaLR 0 428 297 186 43 0 0 chr9 2216782 2216805 -140054639 + (GA)n Simple_repeat Simple_repeat 1 23 0 1668 150 221 11 chr9 2216805 2216989 -140054455 - MSTA LTR MaLR -131 297 2 1245 239 25 28 chr9 2216989 2217146 -140054298 + Charlie5 DNA MER1_type 425 581 -2043 1924 181 111 2 chr9 2217342 2217811 -140053633 + Charlie5 DNA MER1_type 924 1443 -1169 276 222 50 119 chr9 2218054 2218306 -140053138 - LTR37A LTR ERV1 -165 261 26 2449 124 55 6 chr9 2218306 2218653 -140052791 - THE1B LTR MaLR 0 364 1 2673 156 27 9 chr9 2218862 2219312 -140052132 - MER65C LTR ERV1 -2 459 2 2371 86 0 7 chr9 2219759 2220062 -140051382 + AluY SINE Alu 2 302 -9 268 167 21 0 chr9 2220108 2220156 -140051288 + MLT1E2 LTR MaLR 2 50 -604 2104 161 76 55 chr9 2220183 2220501 -140050943 + MER31A LTR ERV1 1 334 -151 2584 39 6 6 chr9 2220501 2220812 -140050632 - AluY SINE Alu 0 311 1 2104 161 76 55 chr9 2220812 2220965 -140050479 + MER31A LTR ERV1 334 482 -3 1569 214 122 57 chr9 2220974 2221450 -140049994 + MLT1E2 LTR MaLR 120 626 0 3836 110 15 19 chr9 2221547 2222073 -140049371 - MER1A DNA MER1_type -3 524 1 274 257 112 62 chr9 2222135 2222314 -140049130 - MIR SINE MIR -15 247 60 2052 175 77 44 chr9 2222370 2222822 -140048622 - MLT1C LTR MaLR 0 467 1 203 365 0 0 chr9 2223330 2223415 -140048029 - MIR SINE MIR -8 254 170 2429 86 0 0 chr9 2223632 2223933 -140047511 - AluSp SINE Alu -12 301 1 537 280 33 22 chr9 2224212 2224394 -140047050 - MIR SINE MIR -51 211 28 1906 249 50 21 chr9 2224503 2225024 -140046420 - MLT1F LTR MaLR 0 542 7 3843 131 24 15 chr9 2225026 2225615 -140045829 + LTR49 LTR ERV1 1 594 -1 267 208 10 146 chr9 2225872 2225968 -140045476 + MIR3 SINE MIR 96 178 -30 3349 130 45 2 chr9 2226049 2226540 -140044904 + MER41E LTR ERV1 1 512 0 211 321 38 38 chr9 2226576 2226707 -140044737 - MIR SINE MIR -58 150 20 232 250 17 0 chr9 2226785 2226845 -140044599 + (CTA)n Simple_repeat Simple_repeat 2 62 0 201 282 97 65 chr9 2226897 2227021 -140044423 - MIR SINE MIR -82 180 53 523 283 19 47 chr9 2227767 2227957 -140043487 - MIR SINE MIR -51 211 27 466 241 62 53 chr9 2227970 2228164 -140043280 - MIR SINE MIR -19 243 49 1461 231 89 100 chr9 2228234 2228533 -140042911 + L2 LINE L2 346 647 -2666 3643 158 82 32 chr9 2228533 2229225 -140042219 + LTR8A LTR ERV1 1 727 0 1461 231 89 100 chr9 2229225 2230004 -140041440 + L2 LINE L2 647 3308 -5 245 106 0 43 chr9 2230309 2230356 -140041088 + (CATA)n Simple_repeat Simple_repeat 1 45 0 243 216 0 54 chr9 2230357 2230407 -140041037 - L1MC4 LINE L1 -1342 6700 6654 1901 152 0 16 chr9 2230407 2230710 -140040734 - AluJo SINE Alu -6 306 9 243 216 0 54 chr9 2230710 2230733 -140040711 - L1MC4 LINE L1 -1388 6654 6631 605 292 11 11 chr9 2231402 2231580 -140039864 + MIR SINE MIR 8 185 -77 631 291 80 37 chr9 2231885 2232235 -140039209 - MLT1I LTR MaLR -38 371 7 268 326 121 7 chr9 2232304 2232445 -140038999 - MIR SINE MIR 0 262 106 1841 142 6 49 chr9 2232450 2232775 -140038669 + AluJb SINE Alu 1 311 -1 361 273 175 0 chr9 2232950 2233093 -140038351 + MER117 DNA MER1_type 4 171 -26 192 298 0 0 chr9 2233109 2233166 -140038278 + MIR SINE MIR 90 146 -62 2302 109 0 6 chr9 2233483 2233794 -140037650 - AluSx SINE Alu 0 312 4 801 302 67 27 chr9 2233935 2234263 -140037181 - LTR33 LTR ERVL -8 513 173 923 215 24 29 chr9 2235077 2235282 -140036162 - MER3 DNA MER1_type 0 209 6 413 294 123 0 chr9 2235446 2235616 -140035828 - MIR SINE MIR 0 262 72 232 234 62 0 chr9 2235620 2235684 -140035760 + MER116 DNA Mariner 11 78 -2 208 174 196 0 chr9 2235686 2235732 -140035712 - MIR SINE MIR -183 79 25 195 256 171 0 chr9 2235775 2235857 -140035587 + MIR SINE MIR 157 252 -10 761 111 151 58 chr9 2236459 2236599 -140034845 + MER53 DNA DNA 1 161 -28 1010 230 56 90 chr9 2236599 2236977 -140034467 + MLT1A1 LTR MaLR 1 365 0 761 111 151 58 chr9 2236977 2237008 -140034436 + MER53 DNA DNA 161 188 -1 753 212 35 6 chr9 2237174 2237344 -140034100 + MER5A DNA MER1_type 4 178 -11 413 306 50 25 chr9 2237354 2237514 -140033930 + MIR SINE MIR 25 188 -74 1042 204 37 28 chr9 2238049 2238265 -140033179 - MER20 DNA MER1_type -1 218 1 1026 203 20 15 chr9 2238375 2238603 -140032841 - AluJo SINE Alu 0 313 85 424 275 67 17 chr9 2238612 2238732 -140032712 - MIR SINE MIR -111 151 26 460 287 28 58 chr9 2239841 2240075 -140031369 + MIR SINE MIR 20 238 -24 221 311 59 42 chr9 2240079 2240198 -140031246 + MIR SINE MIR 106 226 -36 318 311 120 18 chr9 2240488 2240655 -140030789 + MER91B DNA MER1_type 1 184 -6 432 269 168 0 chr9 2240946 2241095 -140030349 + MIR SINE MIR 20 193 -69 22 0 0 0 chr9 2241117 2241139 -140030305 + AT_rich Low_complexity Low_complexity 1 22 0 1591 51 51 0 chr9 2241419 2241616 -140029828 - L1PA4 LINE L1 -2 6153 5947 2064 162 3 26 chr9 2241817 2242162 -140029282 - MER1B DNA MER1_type 0 337 1 327 257 95 19 chr9 2243210 2243315 -140028129 + MARNA DNA Mariner 66 178 -408 499 307 70 23 chr9 2243400 2243615 -140027829 + MARNA DNA Mariner 313 537 -49 423 264 75 87 chr9 2243943 2244498 -140026946 + LTR50 LTR ERVL 1 520 -3 351 221 75 29 chr9 2245738 2245895 -140025549 + MLT1H LTR MaLR 12 177 -334 385 245 47 63 chr9 2246004 2246190 -140025254 + MLT1H LTR MaLR 333 530 -19 125 81 0 0 chr9 2246216 2246546 -140024898 + AT_rich Low_complexity Low_complexity 1 300 0 111 89 0 0 chr9 2246550 2246843 -140024601 + AT_rich Low_complexity Low_complexity 1 293 0 566 277 135 31 chr9 2246987 2247276 -140024168 + L2 LINE L2 2995 3313 0 23 0 0 0 chr9 2247989 2248012 -140023432 + AT_rich Low_complexity Low_complexity 1 23 0 286 244 47 110 chr9 2248490 2248617 -140022827 - MIR3 SINE MIR -53 155 37 461 239 92 8 chr9 2249047 2249177 -140022267 + MIR SINE MIR 14 154 -108 215 326 76 22 chr9 2252073 2252165 -140019279 - L2 LINE L2 -44 3228 3132 819 284 47 0 chr9 2252589 2252825 -140018619 - L1MC/D LINE L1 -2045 5763 5517 496 263 56 15 chr9 2252828 2253074 -140018370 - L1MC/D LINE L1 -748 5398 5220 330 213 118 66 chr9 2253201 2253337 -140018107 - L1MC/D LINE L1 -1156 4990 4848 2085 142 0 16 chr9 2253675 2253985 -140017459 + AluSx SINE Alu 1 305 -7 2288 114 0 0 chr9 2254040 2254339 -140017105 - AluSx SINE Alu -13 299 1 264 299 123 75 chr9 2254577 2254634 -140016810 + L3 LINE CR1 1380 1433 -144 2899 89 5 5 chr9 2254634 2255014 -140016430 - L1PA8 LINE L1 -1 6171 5792 264 299 123 75 chr9 2255014 2255143 -140016301 + L3 LINE CR1 1433 1575 -2 301 211 132 0 chr9 2255488 2255564 -140015880 - MIR SINE MIR -75 187 102 189 74 0 0 chr9 2255595 2255622 -140015822 + (TTA)n Simple_repeat Simple_repeat 2 28 0 202 286 179 9 chr9 2255670 2255782 -140015662 + L2 LINE L2 3151 3281 -32 404 211 0 0 chr9 2255799 2255875 -140015569 + L1MD1 LINE L1 6156 6231 -11 262 177 39 21 chr9 2256065 2256138 -140015306 + MIR SINE MIR 91 169 -39 335 164 0 14 chr9 2256421 2256494 -140014950 + MER3 DNA MER1_type 96 167 -42 31 0 0 0 chr9 2256502 2256533 -140014911 + AT_rich Low_complexity Low_complexity 1 31 0 1549 188 7 24 chr9 2256533 2256825 -140014619 - AluJb SINE Alu -25 287 1 417 104 60 0 chr9 2256825 2256892 -140014552 + MER3 DNA MER1_type 139 209 0 191 319 149 11 chr9 2257772 2257866 -140013578 - MIR3 SINE MIR -47 161 55 395 269 41 58 chr9 2258172 2258343 -140013101 - MIR3 SINE MIR -25 183 16 24 0 0 0 chr9 2259463 2259487 -140011957 + AT_rich Low_complexity Low_complexity 1 24 0 628 284 38 38 chr9 2259892 2260156 -140011288 - MLT1J LTR MaLR -8 503 240 864 233 10 26 chr9 2260157 2260350 -140011094 + AluJo SINE Alu 122 311 -1 310 258 47 74 chr9 2260835 2261025 -140010419 - L1ME4a LINE L1 -2 6119 5935 3042 60 19 0 chr9 2261066 2261434 -140010010 - L1PA8 LINE L1 -7 6165 5791 564 283 30 18 chr9 2261805 2261971 -140009473 + MIR3 SINE MIR 34 201 -7 229 189 75 0 chr9 2262047 2262100 -140009344 + L2 LINE L2 3257 3313 0 322 292 62 59 chr9 2262208 2262356 -140009088 - L1M4 LINE L1 -1630 4516 4370 2028 138 0 10 chr9 2262356 2262654 -140008790 - AluSx SINE Alu -17 295 1 322 292 62 59 chr9 2262654 2262909 -140008535 - L1M4 LINE L1 -1776 4370 4112 869 265 73 83 chr9 2262914 2263441 -140008003 - L1M4 LINE L1 -996 5150 4632 1381 170 134 0 chr9 2263441 2263694 -140007750 - AluSx SINE Alu -25 287 1 869 265 73 83 chr9 2263694 2263948 -140007496 - L1M4 LINE L1 -1514 4632 4377 294 214 0 0 chr9 2263950 2264006 -140007438 + MLT1F1 LTR MaLR 3 58 -509 867 248 63 38 chr9 2264047 2264285 -140007159 + MLT1F1 LTR MaLR 50 293 -274 366 315 81 35 chr9 2264363 2264769 -140006675 - L1M4 LINE L1 -1757 4389 3965 411 21 0 0 chr9 2264783 2264831 -140006613 + (CA)n Simple_repeat Simple_repeat 2 49 0 308 313 15 37 chr9 2264839 2265002 -140006442 - L1ME4a LINE L1 -487 5634 5495 974 243 21 0 chr9 2265038 2265273 -140006171 - MIR SINE MIR 0 262 23 1438 195 47 0 chr9 2265275 2265552 -140005892 - AluJo SINE Alu -14 298 9 191 269 247 0 chr9 2265617 2265710 -140005734 - MIR SINE MIR -4 258 143 994 167 6 36 chr9 2265928 2266096 -140005348 - FRAM SINE Alu -3 163 1 500 307 98 19 chr9 2266158 2266373 -140005071 + MIR SINE MIR 20 251 -11 765 268 9 28 chr9 2266548 2266761 -140004683 - MIR SINE MIR -25 237 29 640 280 69 0 chr9 2267009 2267227 -140004217 + MIR SINE MIR 29 261 -1 258 244 144 11 chr9 2267793 2267883 -140003561 - MER5B DNA MER1_type -51 127 26 1047 171 15 20 chr9 2268563 2268762 -140002682 - AluJo SINE Alu -21 291 94 313 221 158 11 chr9 2268801 2268896 -140002548 + MIR3 SINE MIR 47 155 -53 255 297 30 20 chr9 2269700 2269801 -140001643 - MIR SINE MIR -50 212 111 34 0 0 0 chr9 2269990 2270024 -140001420 + AT_rich Low_complexity Low_complexity 1 34 0 1705 181 7 19 chr9 2270057 2270367 -140001077 - AluJo SINE Alu -6 306 1 200 244 22 0 chr9 2270375 2270420 -140001024 - MER5A DNA MER1_type -79 110 65 611 111 202 0 chr9 2270965 2271064 -140000380 + AluJb SINE Alu 182 300 -12 243 225 56 28 chr9 2271070 2271141 -140000303 + MER5A DNA MER1_type 117 189 0 1384 160 36 4 chr9 2272335 2272560 -139998884 - MER46A DNA MER2_type 0 236 5 321 276 43 9 chr9 2272766 2272882 -139998562 - MIR SINE MIR -48 214 95 800 219 48 28 chr9 2272905 2272979 -139998465 - L1MB4 LINE L1 -23 6157 6086 1487 122 5 0 chr9 2272979 2273184 -139998260 + AluSx SINE Alu 1 206 -106 800 219 48 28 chr9 2273184 2273396 -139998048 - L1MB4 LINE L1 -94 6086 5950 2701 23 0 0 chr9 2273706 2274005 -139997439 + AluY SINE Alu 3 301 -10 1858 130 38 17 chr9 2274103 2274395 -139997049 - AluJb SINE Alu -14 298 1 327 49 0 0 chr9 2274427 2274468 -139996976 + (CA)n Simple_repeat Simple_repeat 2 42 0 308 267 10 20 chr9 2274949 2275050 -139996394 + MIR SINE MIR 150 249 -13 370 237 51 70 chr9 2275141 2275171 -139996273 - MIR SINE MIR -102 160 131 333 0 0 0 chr9 2275171 2275208 -139996236 + (TG)n Simple_repeat Simple_repeat 2 38 0 370 237 51 70 chr9 2275208 2275333 -139996111 - MIR SINE MIR -131 131 8 2143 132 0 0 chr9 2275886 2276181 -139995263 + AluSx SINE Alu 1 295 -17 2381 164 10 10 chr9 2277794 2278183 -139993261 + MLT1B LTR MaLR 1 389 -1 2219 125 3 0 chr9 2279250 2279554 -139991890 + AluSp SINE Alu 1 305 -8 1753 246 87 24 chr9 2279579 2280120 -139991324 - MER90 LTR ERV1 0 575 1 213 167 42 0 chr9 2281137 2281185 -139990259 + CT-rich Low_complexity Low_complexity 3 52 0 180 77 0 0 chr9 2281430 2281456 -139989988 + (T)n Simple_repeat Simple_repeat 1 26 0 2086 121 20 0 chr9 2282457 2282755 -139988689 + AluSx SINE Alu 1 304 -8 327 203 0 0 chr9 2282755 2282824 -139988620 + (TA)n Simple_repeat Simple_repeat 2 70 0 276 30 0 0 chr9 2282824 2282857 -139988587 + (CA)n Simple_repeat Simple_repeat 2 34 0 492 260 0 0 chr9 2282965 2283065 -139988379 - MER58B DNA MER1_type 0 341 242 472 153 0 14 chr9 2283111 2283183 -139988261 + AluSg/x SINE Alu 86 156 -154 532 160 180 82 chr9 2283194 2283388 -139988056 - MER58B DNA MER1_type -128 213 1 315 313 53 33 chr9 2283421 2283571 -139987873 - L1MC4a LINE L1 -1845 5963 5811 915 197 0 38 chr9 2283643 2283826 -139987618 - AluJb SINE Alu -3 309 134 1969 130 3 10 chr9 2283826 2284127 -139987317 - AluSx SINE Alu -13 299 1 274 351 0 0 chr9 2284129 2284243 -139987201 - L1MC4a LINE L1 -379 5742 5629 336 278 41 0 chr9 2284899 2284996 -139986448 + MIR3 SINE MIR 96 196 -12 238 292 29 109 chr9 2285020 2285107 -139986337 + L2 LINE L2 3146 3220 -52 1638 169 14 27 chr9 2285107 2285402 -139986042 + AluJo SINE Alu 1 291 -21 238 292 29 109 chr9 2285402 2285451 -139985993 + L2 LINE L2 3220 3271 -1 722 285 94 84 chr9 2285500 2286083 -139985361 + MLT1L LTR MaLR 19 607 -8 2388 83 0 0 chr9 2287052 2287354 -139984090 + AluY SINE Alu 1 302 -9 302 291 127 63 chr9 2287821 2287979 -139983465 + MIR SINE MIR 20 187 -75 563 323 96 27 chr9 2288004 2288084 -139983360 - L2 LINE L2 0 3272 3199 1973 159 0 3 chr9 2288084 2288386 -139983058 + AluSx SINE Alu 1 301 -11 563 323 96 27 chr9 2288386 2288711 -139982733 - L2 LINE L2 -73 3199 2839 2446 89 0 0 chr9 2288733 2289035 -139982409 + AluSc SINE Alu 1 302 -7 183 330 8 93 chr9 2289047 2289165 -139982279 - MIR SINE MIR -126 136 29 298 263 61 35 chr9 2291192 2291306 -139980138 + L2 LINE L2 3197 3313 0 2697 145 20 57 chr9 2291523 2292068 -139979376 + L1MB4 LINE L1 5655 6179 -1 506 338 32 18 chr9 2292160 2292379 -139979065 + MIR SINE MIR 29 250 -12 2815 110 0 3 chr9 2292495 2292860 -139978584 - THE1B LTR MaLR 0 364 1 503 231 59 117 chr9 2293201 2293673 -139977771 - HAL1 LINE L1 -32 2475 2031 2313 250 80 57 chr9 2293678 2294792 -139976652 - HAL1 LINE L1 -838 1669 530 313 298 43 27 chr9 2294942 2295130 -139976314 + L1ME4a LINE L1 5725 5915 -206 2267 108 3 0 chr9 2295576 2295873 -139975571 - AluY SINE Alu -13 298 1 509 317 54 32 chr9 2295881 2296253 -139975191 - L1M4 LINE L1 -2055 4091 3712 3797 152 17 2 chr9 2296355 2296934 -139974510 - L1PA15 LINE L1 0 6165 5578 977 233 49 0 chr9 2296962 2297207 -139974237 + L1M4 LINE L1 2476 2732 -3414 3224 245 33 16 chr9 2297210 2298129 -139973315 - L1M4 LINE L1 -1694 4452 3519 2211 107 3 7 chr9 2298644 2298944 -139972500 + AluSg SINE Alu 1 299 -11 437 341 29 39 chr9 2299625 2299830 -139971614 - MIR SINE MIR -58 204 2 2312 109 69 29 chr9 2300801 2301151 -139970293 - THE1B LTR MaLR 0 364 1 11275 102 2 81 chr9 2301151 2302865 -139968579 - THE1B-int LTR MaLR 0 1580 1 2380 125 43 14 chr9 2302867 2303219 -139968225 - THE1B LTR MaLR -2 362 1 375 247 58 39 chr9 2303808 2303962 -139967482 - L2 LINE L2 -202 3070 2914 221 114 45 0 chr9 2305433 2305477 -139965967 + T-rich Low_complexity Low_complexity 2 47 0 207 265 20 0 chr9 2305646 2305695 -139965749 + L3 LINE CR1 1526 1575 -2 905 289 141 18 chr9 2306307 2306977 -139964467 + L2 LINE L2 2563 3308 -5 180 0 0 0 chr9 2307880 2307900 -139963544 + (TTTA)n Simple_repeat Simple_repeat 2 21 0 187 297 164 16 chr9 2307937 2308065 -139963379 - MIR SINE MIR -50 212 66 236 273 141 41 chr9 2309648 2309769 -139961675 + MIR SINE MIR 112 244 -18 289 289 193 15 chr9 2310134 2310269 -139961175 - MIR SINE MIR -22 240 82 252 0 0 0 chr9 2311884 2311912 -139959532 + (T)n Simple_repeat Simple_repeat 1 28 0 1027 84 30 0 chr9 2312412 2312543 -139958901 - AluJb SINE Alu -177 135 1 934 192 34 0 chr9 2313709 2313886 -139957558 - MER5A DNA MER1_type 0 189 7 213 290 68 91 chr9 2318911 2319012 -139952432 - L2 LINE L2 -554 2760 2663 1750 165 42 93 chr9 2319012 2319177 -139952267 + MLT1B LTR MaLR 1 173 -217 2136 117 0 0 chr9 2319177 2319468 -139951976 + AluSx SINE Alu 15 305 -7 1750 165 42 93 chr9 2319468 2319709 -139951735 + MLT1B LTR MaLR 173 386 -4 213 290 68 91 chr9 2319709 2319783 -139951661 - L2 LINE L2 -651 2663 2589 2475 65 6 37 chr9 2324386 2324709 -139946735 + AluSq SINE Alu 1 313 0 1757 188 36 36 chr9 2329401 2329762 -139941682 + MLT1A1 LTR MaLR 1 361 -4 524 221 44 0 chr9 2330111 2330224 -139941220 + MER94 DNA DNA 1 118 -16 189 0 0 0 chr9 2330865 2330886 -139940558 + (ATTG)n Simple_repeat Simple_repeat 2 22 0 2455 71 0 7 chr9 2330886 2331195 -139940249 - AluY SINE Alu -4 307 1 757 304 24 0 chr9 2333571 2333778 -139937666 + MLT1J LTR MaLR 70 281 -230 333 0 0 0 chr9 2335766 2335803 -139935641 + (CA)n Simple_repeat Simple_repeat 1 37 0 189 0 0 0 chr9 2335802 2335823 -139935621 + (TC)n Simple_repeat Simple_repeat 1 21 0 * 4601 157 29 8 chr9 2336993 2338106 -139933338 - L1MA4A LINE L1 -6 6150 5062 2120 133 10 0 chr9 2338761 2339070 -139932374 + AluSq SINE Alu 1 312 -1 529 272 108 15 chr9 2339233 2339428 -139932016 - MIR SINE MIR -35 227 15 787 181 29 103 chr9 2339634 2339838 -139931606 - MER5A DNA MER1_type 0 189 1 2308 87 0 7 chr9 2340972 2341272 -139930172 - AluSg SINE Alu -12 298 1 273 339 111 35 chr9 2341686 2341857 -139929587 + L2 LINE L2 3082 3265 -7 2207 134 61 9 chr9 2342405 2342748 -139928696 + MER46B DNA MER2_type 1 236 0 198 355 16 0 chr9 2343825 2343887 -139927557 - L3 LINE CR1 -1460 117 55 225 0 0 0 chr9 2346677 2346702 -139924742 + (CCG)n Simple_repeat Simple_repeat 1 25 0 307 286 24 0 chr9 2346739 2346823 -139924621 + G-rich Low_complexity Low_complexity 2 87 0 205 122 0 41 chr9 2346935 2346984 -139924460 + (GGGGA)n Simple_repeat Simple_repeat 5 51 0 23 33 0 0 chr9 2347103 2347133 -139924311 + GC_rich Low_complexity Low_complexity 1 30 0 251 366 24 0 chr9 2349098 2349180 -139922264 + MIR SINE MIR 65 148 -60 194 336 181 0 chr9 2349491 2349607 -139921837 - L2 LINE L2 0 3272 3136 708 265 45 9 chr9 2349782 2350005 -139921439 + MLT1I LTR MaLR 39 269 -140 791 255 82 0 chr9 2350079 2350263 -139921181 + MER58C DNA MER1_type 2 200 -15 351 193 121 12 chr9 2350304 2350387 -139921057 + MLT1I LTR MaLR 318 409 0 1610 161 23 33 chr9 2350771 2351076 -139920368 + AluJb SINE Alu 1 302 -10 342 339 3 7 chr9 2351214 2351348 -139920096 - MER5A DNA MER1_type -43 146 1 1123 159 74 0 chr9 2351774 2351950 -139919494 - MER5A DNA MER1_type 0 189 1 454 342 79 33 chr9 2352002 2352394 -139919050 + MLT1K LTR MaLR 162 571 -17 920 232 32 41 chr9 2352763 2352983 -139918461 + MER20B DNA MER1_type 2 219 0 845 249 92 9 chr9 2354201 2354418 -139917026 + MIR SINE MIR 2 236 -26 565 247 45 32 chr9 2354486 2354640 -139916804 + MER5B DNA MER1_type 3 158 -20 2405 97 3 0 chr9 2355499 2355809 -139915635 + AluSx SINE Alu 1 311 -1 5246 139 19 1 chr9 2356695 2357493 -139913951 + L1MA4A LINE L1 5486 6297 -6 1445 161 24 69 chr9 2358749 2359084 -139912360 - L1MA7 LINE L1 -2 6289 5970 2209 93 0 42 chr9 2359089 2359401 -139912043 - AluSx SINE Alu -13 299 1 367 303 8 8 chr9 2361324 2361443 -139910001 + MIR SINE MIR 32 150 -112 1564 233 81 40 chr9 2362026 2362558 -139908886 - MER20B DNA MER1_type -1 782 229 1289 172 19 34 chr9 2362612 2362880 -139908564 - AluJo SINE Alu -7 305 42 415 225 78 56 chr9 2362884 2363026 -139908418 - MER20B DNA MER1_type -608 175 31 473 294 73 14 chr9 2363417 2363547 -139907897 + MIR SINE MIR 18 168 -94 1572 213 96 0 chr9 2363547 2363880 -139907564 - MLT1A1 LTR MaLR 0 365 1 473 294 73 14 chr9 2363880 2363967 -139907477 + MIR SINE MIR 168 248 -14 5065 105 1 7 chr9 2364029 2364716 -139906728 - L1PA13 LINE L1 -13 6150 5468 280 295 18 18 chr9 2366198 2366310 -139905134 - L1ME4a LINE L1 -48 6073 5962 836 193 0 0 chr9 2366351 2366491 -139904953 + FRAM SINE Alu 1 140 -36 2192 106 0 3 chr9 2367124 2367416 -139904028 - AluSx SINE Alu -21 291 1 189 154 51 0 chr9 2367585 2367624 -139903820 + L2 LINE L2 184 224 -3090 300 234 0 64 chr9 2368823 2368917 -139902527 + CT-rich Low_complexity Low_complexity 1 88 0 306 125 0 0 chr9 2370054 2370102 -139901342 + (TCC)n Simple_repeat Simple_repeat 1 48 0 1923 173 3 0 chr9 2370102 2370408 -139901036 - AluJb SINE Alu -5 307 1 316 274 121 40 chr9 2371083 2371245 -139900199 + MIR SINE MIR 16 179 -56 209 312 184 32 chr9 2371354 2371572 -139899872 + MIR SINE MIR 11 261 -1 28 0 0 0 chr9 2373103 2373131 -139898313 + AT_rich Low_complexity Low_complexity 1 28 0 260 235 176 15 chr9 2373349 2373553 -139897891 - L1ME4a LINE L1 -4 6117 5881 235 332 161 10 chr9 2373699 2373868 -139897576 - L1ME4a LINE L1 -452 5669 5466 507 253 11 79 chr9 2373868 2374058 -139897386 + MER5B DNA MER1_type 1 177 -1 235 332 161 10 chr9 2374058 2374081 -139897363 - L1ME4a LINE L1 -655 5466 5448 470 305 78 38 chr9 2374902 2375272 -139896172 + MLT1J LTR MaLR 108 492 -19 2036 171 28 104 chr9 2375516 2375979 -139895465 + MSTB1 LTR MaLR 1 428 -4 9590 173 40 7 chr9 2375983 2377581 -139893863 + MSTB-int LTR MaLR 1 1651 0 2286 188 39 12 chr9 2377581 2377996 -139893448 + MSTB LTR MaLR 1 426 0 2236 153 5 16 chr9 2379184 2379556 -139891888 - L1PB1 LINE L1 -2 6149 5782 463 174 23 0 chr9 2379556 2379642 -139891802 + L1PB1 LINE L1 5777 5864 -287 305 151 0 0 chr9 2379655 2379708 -139891736 - L1PB1 LINE L1 -595 5556 5504 556 143 0 17 chr9 2379708 2379827 -139891617 + (TA)n Simple_repeat Simple_repeat 1 117 0 15366 193 27 7 chr9 2379827 2382452 -139888992 - L1P5 LINE L1 -360 6507 3936 207 0 0 0 chr9 2382452 2382475 -139888969 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 15366 193 27 7 chr9 2382475 2385443 -139886001 - L1P5 LINE L1 -2931 3936 653 259 184 126 23 chr9 2385584 2385671 -139885773 + MLT1A2 LTR MaLR 1 96 -278 402 21 0 0 chr9 2386014 2386061 -139885383 + (TAAA)n Simple_repeat Simple_repeat 2 48 0 356 250 156 19 chr9 2387303 2387463 -139883981 - L1ME3A LINE L1 0 6170 5989 370 278 42 75 chr9 2387523 2387567 -139883877 - L1MEc LINE L1 -4869 1393 1349 3098 80 22 59 chr9 2387567 2388028 -139883416 - MLT2A1 LTR ERVL 0 444 1 370 278 42 75 chr9 2388028 2388518 -139882926 - L1MEc LINE L1 -4913 1349 928 2440 69 0 0 chr9 2388470 2388830 -139882614 - AluY SINE Alu -5 306 1 342 184 51 20 chr9 2389111 2389209 -139882235 - L1MC5 LINE L1 -30 7931 7831 389 351 121 4 chr9 2389221 2389469 -139881975 - L1MEc LINE L1 -5292 827 551 762 282 194 5 chr9 2390050 2390462 -139880982 + LTR33A LTR ERVL 5 494 -29 429 301 21 43 chr9 2391527 2391713 -139879731 + MIR SINE MIR 11 192 -70 1456 204 29 50 chr9 2393092 2393474 -139877970 - MLT1A2 LTR MaLR 0 374 1 635 178 0 75 chr9 2393556 2393702 -139877742 - AluJo/FRAM SINE Alu -3 309 175 317 183 56 14 chr9 2393702 2393773 -139877671 - Alu SINE Alu -251 52 2 507 279 161 43 chr9 2394229 2394576 -139876868 + L2 LINE L2 2924 3311 -2 224 266 164 31 chr9 2394588 2394716 -139876728 - MIR SINE MIR -66 196 52 2242 120 0 7 chr9 2394982 2395281 -139876163 - AluSx SINE Alu -15 297 1 2094 131 108 10 chr9 2396264 2396652 -139874792 + MSTB LTR MaLR 1 426 0 1879 199 14 0 chr9 2396913 2397284 -139874160 + MLT1B LTR MaLR 15 390 0 264 276 0 0 chr9 2397483 2397541 -139873903 - L2 LINE L2 -2 3270 3213 381 22 0 0 chr9 2398309 2398355 -139873089 - MLT2C1 LTR ERVL 0 515 470 1158 122 0 0 chr9 2398356 2398536 -139872908 + (TA)n Simple_repeat Simple_repeat 1 180 0 374 258 0 43 chr9 2398546 2398732 -139872712 + (CATATA)n Simple_repeat Simple_repeat 3 180 0 405 0 0 0 chr9 2398733 2398778 -139872666 + (TG)n Simple_repeat Simple_repeat 1 45 0 1665 193 15 9 chr9 2398816 2399153 -139872291 - MLT2C1 LTR ERVL -58 339 1 405 309 11 56 chr9 2399245 2399423 -139872021 - L3 LINE CR1 -112 1465 1296 229 135 0 0 chr9 2399523 2399560 -139871884 - MER103 DNA DNA -1 165 129 939 249 111 47 chr9 2399748 2400153 -139871291 - MLT1H LTR MaLR 0 549 119 242 313 117 31 chr9 2400263 2400426 -139871018 - MER5B DNA MER1_type -1 177 1 1677 165 47 52 chr9 2401139 2401521 -139869923 - MLT1B LTR MaLR -10 380 1 854 236 64 40 chr9 2402054 2402086 -139869358 + MIR SINE MIR 7 37 -225 1107 202 52 0 chr9 2402086 2402299 -139869145 + MER58A DNA MER1_type 1 224 0 854 236 64 40 chr9 2402299 2402516 -139868928 + MIR SINE MIR 37 262 0 1764 167 20 0 chr9 2403410 2403703 -139867741 + AluJo SINE Alu 1 299 -13 3038 81 26 2 chr9 2403884 2404305 -139867139 + MLT2A2 LTR ERVL 23 453 0 5250 141 47 1 chr9 2404349 2405314 -139866130 - L1MC1 LINE L1 -1 6612 5604 2240 105 10 0 chr9 2405314 2405610 -139865834 - AluSp SINE Alu -14 299 1 4288 111 28 7 chr9 2405628 2406315 -139865129 - L1MA3 LINE L1 0 6305 5605 210 71 0 0 chr9 2406315 2406343 -139865101 + (TTTAA)n Simple_repeat Simple_repeat 3 30 0 998 148 0 0 chr9 2406344 2406506 -139864938 - L1PA15 LINE L1 -31 6134 5973 19445 134 29 10 chr9 2406515 2409743 -139861701 - L1M1 LINE L1 -4262 3303 14 1309 229 61 11 chr9 2409748 2410108 -139861336 - L1MC1 LINE L1 -823 5603 5216 201 39 0 0 chr9 2410108 2410134 -139861310 + (TTTTG)n Simple_repeat Simple_repeat 1 26 0 1309 229 61 11 chr9 2410134 2410213 -139861231 - L1MC1 LINE L1 -1210 5216 5142 * 1603 267 6 0 chr9 2410212 2410702 -139860742 - L1MC1 LINE L1 -3420 3006 2514 2521 179 53 2 chr9 2410702 2411287 -139860157 + L1PBa LINE L1 1758 2372 -4491 5964 92 14 22 chr9 2411287 2412208 -139859236 - L1PA12 LINE L1 -4 6164 5236 4272 76 43 3 chr9 2412208 2412790 -139858654 + LTR14B LTR ERVK 4 608 0 5964 92 14 22 chr9 2412790 2413399 -139858045 - L1PA12 LINE L1 -932 5236 4638 2200 132 0 0 chr9 2413399 2413695 -139857749 + AluSx SINE Alu 1 296 -16 5964 92 14 22 chr9 2413695 2413947 -139857497 - L1PA12 LINE L1 -1530 4638 4385 559 239 22 0 chr9 2413948 2414082 -139857362 - L1MC1 LINE L1 -6284 142 6 447 246 44 11 chr9 2414509 2414692 -139856752 - L1ME4a LINE L1 -2 6119 5931 378 323 62 0 chr9 2414716 2414877 -139856567 - MIR SINE MIR -2 260 90 21 71 0 0 chr9 2414938 2414980 -139856464 + AT_rich Low_complexity Low_complexity 1 42 0 21 0 0 0 chr9 2415057 2415078 -139856366 + AT_rich Low_complexity Low_complexity 1 21 0 2447 63 0 3 chr9 2415724 2416025 -139855419 - AluY SINE Alu -11 300 1 338 216 129 52 chr9 2416292 2416408 -139855036 - MIR3 SINE MIR -6 202 78 1565 268 26 35 chr9 2416640 2417210 -139854234 - L1MD3 LINE L1 -18 7977 7413 476 202 0 23 chr9 2417212 2417341 -139854103 + L1MD3 LINE L1 6938 7063 -932 3145 207 32 2 chr9 2417348 2417975 -139853469 + MER82 DNA MER2_type 8 653 0 725 214 61 31 chr9 2417980 2418209 -139853235 + L1MC4a LINE L1 7015 7250 -558 24 0 0 0 chr9 2418342 2418366 -139853078 + AT_rich Low_complexity Low_complexity 1 24 0 333 282 137 8 chr9 2418575 2418706 -139852738 + L2 LINE L2 3122 3269 -3 813 262 187 18 chr9 2419133 2419518 -139851926 - MLT1J2 LTR MaLR 0 450 1 226 301 70 24 chr9 2420211 2420424 -139851020 - L1ME4a LINE L1 -4 6117 5895 599 208 214 0 chr9 2420644 2420812 -139850632 + MIR SINE MIR 58 261 -1 952 173 9 61 chr9 2420866 2421097 -139850347 + MER20 DNA MER1_type 1 219 0 706 216 29 39 chr9 2421325 2421533 -139849911 - MER106A DNA MER1_type -2 234 29 205 347 95 11 chr9 2422494 2422589 -139848855 + L2 LINE L2 3161 3263 -9 1554 201 7 26 chr9 2423777 2424080 -139847364 - AluJb SINE Alu -15 297 1 464 295 70 8 chr9 2424300 2424429 -139847015 + L2 LINE L2 3136 3272 0 5846 83 30 52 chr9 2425024 2426637 -139844807 + L1PA10 LINE L1 4558 6152 -16 2242 117 0 13 chr9 2427304 2427621 -139843823 + AluSq SINE Alu 1 313 0 22 0 0 0 chr9 2428381 2428403 -139843041 + AT_rich Low_complexity Low_complexity 1 22 0 189 0 0 0 chr9 2429249 2429270 -139842174 + (T)n Simple_repeat Simple_repeat 1 21 0 29 0 0 0 chr9 2429886 2429915 -139841529 + AT_rich Low_complexity Low_complexity 1 29 0 215 274 0 0 chr9 2430192 2430243 -139841201 + G-rich Low_complexity Low_complexity 6 56 0 340 263 53 45 chr9 2431139 2431272 -139840172 - MIR SINE MIR -18 244 111 580 261 141 5 chr9 2432109 2432308 -139839136 + MIR SINE MIR 29 254 -8 823 243 79 69 chr9 2433817 2434224 -139837220 + HsTC2a DNA Tc2 94 504 -240 455 156 22 11 chr9 2434225 2434315 -139837129 + HsTC2a DNA Tc2 651 741 -1 250 292 83 0 chr9 2434931 2435051 -139836393 - L3b LINE CR1 -351 1232 1103 258 225 56 11 chr9 2435063 2435152 -139836292 - MER94 DNA DNA -9 125 33 863 274 155 44 chr9 2435190 2435602 -139835842 - L3 LINE CR1 -492 1085 615 2203 92 0 3 chr9 2435602 2435924 -139835520 + AluSg SINE Alu 1 321 0 863 274 155 44 chr9 2435924 2435967 -139835477 - L3 LINE CR1 -962 615 578 1144 199 85 99 chr9 2435969 2436462 -139834982 - LTR29 LTR ERV1 0 622 137 276 283 23 48 chr9 2436437 2436584 -139834860 - MER34 LTR ERV1 -409 133 1 * 182 329 25 63 chr9 2436605 2436763 -139834681 - L3 LINE CR1 -1055 522 371 180 143 0 122 chr9 2436844 2436893 -139834551 + L2 LINE L2 3261 3303 -10 2182 111 20 3 chr9 2438061 2438359 -139833085 + AluSx SINE Alu 1 303 -9 603 293 102 5 chr9 2438364 2438569 -139832875 + MIR SINE MIR 28 252 -10 547 281 207 5 chr9 2438766 2438969 -139832475 + MIR SINE MIR 2 245 -17 396 312 28 7 chr9 2439232 2439373 -139832071 - MER117 DNA MER1_type -53 144 1 2234 116 0 13 chr9 2439469 2439780 -139831664 - AluSx SINE Alu -5 307 1 1944 130 14 0 chr9 2440170 2440455 -139830989 - AluSq SINE Alu -7 306 18 665 302 33 13 chr9 2440606 2440915 -139830529 + L1ME LINE L1 5316 5558 -604 2822 82 3 72 chr9 2440946 2441337 -139830107 - THE1B LTR MaLR 0 364 1 523 220 20 0 chr9 2441376 2441476 -139829968 - MER94 DNA DNA 0 134 33 25 0 0 0 chr9 2441888 2441913 -139829531 + AT_rich Low_complexity Low_complexity 1 25 0 24 0 0 0 chr9 2441965 2441989 -139829455 + AT_rich Low_complexity Low_complexity 1 24 0 240 86 0 0 chr9 2442847 2442882 -139828562 + (TG)n Simple_repeat Simple_repeat 1 35 0 264 59 0 0 chr9 2442882 2442916 -139828528 + (GA)n Simple_repeat Simple_repeat 2 35 0 902 180 33 27 chr9 2443086 2443260 -139828184 + MLT1H LTR MaLR 1 175 -374 3462 138 66 22 chr9 2443260 2443849 -139827595 - MER41B LTR ERV1 0 635 21 245 91 0 0 chr9 2443846 2443879 -139827565 - MER41A LTR ERV1 -496 58 26 * 590 235 103 135 chr9 2443887 2444236 -139827208 + MLT1H LTR MaLR 173 510 -39 827 133 103 42 chr9 2445333 2445498 -139825946 + L1PA16 LINE L1 5992 6166 0 21 57 0 0 chr9 2445607 2445642 -139825802 + AT_rich Low_complexity Low_complexity 1 35 0 216 299 219 12 chr9 2445773 2445937 -139825507 + MIR SINE MIR 59 256 -6 348 217 29 0 chr9 2446813 2446882 -139824562 - MER5B DNA MER1_type 0 178 108 12394 118 32 81 chr9 2446886 2453214 -139818230 + L1PA8 LINE L1 12 6172 0 371 197 21 3 chr9 2453214 2453302 -139818142 + L1M4 LINE L1 4657 4751 -1395 393 22 0 0 chr9 2453304 2453349 -139818095 - LTR7 LTR ERV1 -405 45 1 3529 107 6 28 chr9 2453349 2453882 -139817562 - HERVH LTR ERV1 0 7713 7193 3118 234 4 4 chr9 2453871 2454572 -139816872 - HERVH LTR ERV1 -2699 5014 4314 * 17139 185 21 36 chr9 2454636 2458728 -139812716 - HERVH LTR ERV1 -2297 4232 1 2083 162 60 21 chr9 2458728 2459161 -139812283 - LTR7 LTR ERV1 0 450 1 9999 147 57 82 chr9 2459215 2460719 -139810725 + L1MC3 LINE L1 5653 7194 -591 277 294 11 22 chr9 2460719 2460811 -139810633 + MLT1F1 LTR MaLR 35 125 -442 9999 147 57 82 chr9 2460811 2461383 -139810061 + L1MC3 LINE L1 7194 7766 -19 2697 20 0 0 chr9 2461383 2461683 -139809761 - AluY SINE Alu -11 300 1 9999 147 57 82 chr9 2461683 2461703 -139809741 + L1MC3 LINE L1 7766 7785 0 505 233 15 3 chr9 2461707 2461826 -139809618 - MER5B DNA MER1_type -57 126 12 255 240 10 80 chr9 2462755 2462855 -139808589 - L2 LINE L2 0 3313 3221 1185 202 5 14 chr9 2462934 2463152 -139808292 + MER20 DNA MER1_type 1 216 -3 1079 181 62 0 chr9 2463654 2463847 -139807597 - MER3 DNA MER1_type -4 205 1 2393 249 34 39 chr9 2465836 2466562 -139804882 + MER21B LTR ERV1 13 735 -128 2573 94 71 0 chr9 2466572 2466922 -139804522 + MER51B LTR ERV1 3 377 0 228 236 55 18 chr9 2466959 2467014 -139804430 - L2 LINE L2 -60 3212 3156 513 287 123 20 chr9 2467051 2467246 -139804198 + LTR33 LTR ERVL 1 215 -306 305 246 106 65 chr9 2467311 2467510 -139803934 + LTR33 LTR ERVL 315 521 0 391 319 60 44 chr9 2468446 2468545 -139802899 - MIR3 SINE MIR -21 187 82 2284 140 10 75 chr9 2468545 2468960 -139802484 - MLT1B LTR MaLR 0 390 3 391 319 60 44 chr9 2468960 2469042 -139802402 - MIR3 SINE MIR -126 82 3 199 306 32 0 chr9 2469829 2469891 -139801553 - MIR SINE MIR -63 145 82 545 291 14 0 chr9 2470180 2470328 -139801116 - MER103 DNA DNA -7 159 10 1082 252 70 83 chr9 2471355 2471954 -139799490 + MLT1L LTR MaLR 21 611 -4 627 322 153 8 chr9 2472185 2472539 -139798905 - L2 LINE L2 -8 3305 2901 250 297 168 0 chr9 2473444 2473545 -139797899 - MIR3 SINE MIR -4 204 87 374 243 168 34 chr9 2473671 2473846 -139797598 - MIR SINE MIR -30 232 31 482 314 168 9 chr9 2474155 2474375 -139797069 + MIR SINE MIR 2 256 -6 2267 97 3 3 chr9 2474527 2474825 -139796619 - AluSp SINE Alu -15 298 1 463 278 133 17 chr9 2476081 2476322 -139795122 - L1ME3 LINE L1 -215 5947 5679 2127 124 0 0 chr9 2476495 2476825 -139794619 - AluSx SINE Alu 0 330 1 1590 170 0 56 chr9 2476831 2477137 -139794307 - AluJb SINE Alu -17 295 7 371 187 131 9 chr9 2477318 2477425 -139794019 - L1MEd LINE L1 -5998 121 2 209 315 46 39 chr9 2478517 2478647 -139792797 + L2 LINE L2 2716 2846 -468 243 0 0 0 chr9 2478704 2478731 -139792713 + (A)n Simple_repeat Simple_repeat 1 27 0 358 256 183 0 chr9 2479273 2479410 -139792034 + MIR SINE MIR 57 218 -44 205 319 109 34 chr9 2479538 2479657 -139791787 - L2 LINE L2 -9 3263 3136 848 215 17 52 chr9 2479684 2479917 -139791527 + MER33 DNA MER1_type 1 225 -99 1045 61 0 0 chr9 2479917 2480048 -139791396 + AluY SINE Alu 181 311 0 252 0 0 0 chr9 2480052 2480080 -139791364 + (TA)n Simple_repeat Simple_repeat 2 29 0 408 112 45 34 chr9 2480087 2480176 -139791268 + MER33 DNA MER1_type 220 309 -15 1837 130 22 7 chr9 2480181 2480458 -139790986 - AluSq SINE Alu -19 294 14 264 300 148 51 chr9 2480522 2480779 -139790665 - L2 LINE L2 -167 3105 2824 225 158 329 13 chr9 2481452 2481528 -139789916 + MER5A DNA MER1_type 59 158 -31 * 445 212 30 10 chr9 2481462 2481561 -139789883 - MER5A DNA MER1_type -80 109 9 * 653 319 152 27 chr9 2481554 2482194 -139789250 - L3 LINE CR1 -16 1561 842 726 288 83 47 chr9 2482373 2482845 -139788599 - L1ME4a LINE L1 -280 5841 5353 2709 100 3 11 chr9 2483041 2483422 -139788022 - L1MA2 LINE L1 0 6304 5927 302 91 121 76 chr9 2483516 2483582 -139787862 + MADE1 DNA Mariner 12 80 0 461 281 39 54 chr9 2483647 2483661 -139787783 - L1ME4a LINE L1 -1968 4178 4165 2281 95 0 10 chr9 2483661 2483966 -139787478 - AluY SINE Alu -9 302 1 461 281 39 54 chr9 2483966 2484268 -139787176 - L1ME4a LINE L1 -1981 4165 3869 839 248 8 33 chr9 2484359 2484601 -139786843 + L1MB7 LINE L1 5948 6183 -1 1416 246 38 32 chr9 2484603 2485628 -139785816 - L1MC4 LINE L1 -384 7658 6462 21 36 0 0 chr9 2486841 2486869 -139784575 + AT_rich Low_complexity Low_complexity 1 28 0 343 316 0 10 chr9 2487364 2487462 -139783982 - L2 LINE L2 0 3313 3217 763 226 97 11 chr9 2487463 2487649 -139783795 + MER63A DNA MER1_type 9 210 0 208 283 0 0 chr9 2487649 2487695 -139783749 - L2 LINE L2 -93 3179 3134 1104 329 70 23 chr9 2487792 2488616 -139782828 - L2 LINE L2 -203 3069 2204 252 294 0 0 chr9 2488821 2488889 -139782555 + MIR SINE MIR 183 250 -12 338 157 12 0 chr9 2488891 2488974 -139782470 + CT-rich Low_complexity Low_complexity 2 85 0 222 125 25 0 chr9 2489087 2489127 -139782317 + (TG)n Simple_repeat Simple_repeat 1 41 0 1656 249 98 52 chr9 2489534 2489873 -139781571 - MLT1G1 LTR MaLR -15 580 258 1832 146 27 7 chr9 2489873 2490174 -139781270 - AluSx SINE Alu -5 307 1 790 282 28 5 chr9 2490089 2490180 -139781264 - AluJo SINE Alu -92 220 3 * 682 246 0 0 chr9 2490180 2490302 -139781142 - FLAM_A SINE Alu -10 123 2 1656 249 98 52 chr9 2490302 2490508 -139780936 - MLT1G1 LTR MaLR -341 254 3 2537 53 3 0 chr9 2491914 2492218 -139779226 + AluYa5 SINE Alu 2 306 -5 31 68 0 0 chr9 2492617 2492676 -139778768 + AT_rich Low_complexity Low_complexity 1 59 0 237 276 150 0 chr9 2493046 2493173 -139778271 + MER117 DNA MER1_type 51 196 -1 372 270 63 9 chr9 2494717 2494828 -139776616 + MIR SINE MIR 8 124 -138 385 273 113 92 chr9 2494833 2495126 -139776318 - L2 LINE L2 0 3272 2974 245 281 177 0 chr9 2495123 2495219 -139776225 + MIR SINE MIR 115 227 -35 * 1317 278 55 26 chr9 2495503 2495957 -139775487 + LTR16C LTR ERVL 1 467 -24 970 294 71 34 chr9 2495967 2496474 -139774970 + LTR67 LTR ERVL 23 548 -9 601 270 82 0 chr9 2496480 2496713 -139774731 - LTR33A LTR ERVL 0 523 272 204 315 121 60 chr9 2496775 2496924 -139774520 - L2 LINE L2 -1141 2173 2016 3057 161 21 3 chr9 2497468 2498047 -139773397 - L1MA8 LINE L1 -22 6269 5681 320 327 69 25 chr9 2498052 2498211 -139773233 + MIR SINE MIR 20 185 -77 186 43 0 0 chr9 2498324 2498347 -139773097 + (CAAAAA)n Simple_repeat Simple_repeat 2 24 0 21 0 0 0 chr9 2499400 2499421 -139772023 + AT_rich Low_complexity Low_complexity 1 21 0 396 255 102 10 chr9 2499916 2500112 -139771332 - HAL1 LINE L1 -296 2211 1998 749 243 78 19 chr9 2500138 2500344 -139771100 - MIR SINE MIR -31 231 14 615 265 90 13 chr9 2500460 2500694 -139770750 - HAL1 LINE L1 -636 1871 1620 1155 248 110 63 chr9 2500713 2501486 -139769958 - HAL1 LINE L1 -1009 1498 690 349 391 14 0 chr9 2502408 2502546 -139768898 - MIR SINE MIR -98 164 25 435 309 33 48 chr9 2502723 2502933 -139768511 + L1MEd LINE L1 122 328 -5791 741 182 0 0 chr9 2503063 2503184 -139768260 + AluJo/FLAM SINE Alu 1 121 -191 1431 186 11 22 chr9 2503184 2503453 -139767991 + AluJo SINE Alu 27 292 -20 932 279 36 68 chr9 2503464 2504203 -139767241 + L1MEd LINE L1 494 1209 -4910 427 292 64 68 chr9 2504219 2504438 -139767006 + HAL1 LINE L1 1301 1518 -989 231 279 31 54 chr9 2505074 2505203 -139766241 + L1ME LINE L1 5610 5735 -386 417 281 136 28 chr9 2505389 2505685 -139765759 + L1ME4a LINE L1 5335 5689 -432 201 74 0 0 chr9 2505685 2505712 -139765732 + (TG)n Simple_repeat Simple_repeat 2 28 0 417 281 136 28 chr9 2505712 2505839 -139765605 + L1ME4a LINE L1 5689 5801 -320 30 59 0 0 chr9 2505869 2505920 -139765524 + AT_rich Low_complexity Low_complexity 1 51 0 243 225 78 47 chr9 2505946 2506075 -139765369 + L1ME4a LINE L1 5977 6109 -12 218 175 0 18 chr9 2506189 2506246 -139765198 + GA-rich Low_complexity Low_complexity 2 57 0 24 77 0 0 chr9 2506353 2506405 -139765039 + AT_rich Low_complexity Low_complexity 1 52 0 430 308 127 60 chr9 2507235 2507651 -139763793 + L2 LINE L2 2804 3247 -25 1719 243 94 8 chr9 2507653 2508164 -139763280 + L1ME3A LINE L1 5613 6167 -3 211 338 12 12 chr9 2509399 2509479 -139761965 + L2 LINE L2 2970 3049 -223 647 203 49 7 chr9 2509594 2509737 -139761707 - MIR SINE MIR -3 259 111 273 348 71 7 chr9 2511116 2511257 -139760187 + L2 LINE L2 3116 3265 -7 5214 175 17 6 chr9 2512332 2513395 -139758049 - L1 LINE L1 -1894 4252 3178 305 291 101 20 chr9 2513396 2513544 -139757900 - L2 LINE L2 -274 2998 2839 1810 101 42 32 chr9 2513597 2513905 -139757539 + L1MA3 LINE L1 5994 6304 -1 269 284 216 61 chr9 2513929 2514207 -139757237 + L2 LINE L2 2988 3308 -5 2212 90 0 0 chr9 2514226 2514527 -139756917 + L1PB1 LINE L1 5851 6151 0 427 286 138 22 chr9 2515741 2515972 -139755472 - MIR SINE MIR 0 262 5 847 140 25 13 chr9 2517648 2517805 -139753639 + L1M4b LINE L1 11 169 -6690 1365 216 28 21 chr9 2517810 2518199 -139753245 + L1 LINE L1 4848 5239 -907 297 54 0 0 chr9 2518200 2518237 -139753207 - MER61A LTR ERV1 0 343 307 337 57 0 38 chr9 2518237 2518290 -139753154 - MLT2A2 LTR ERVL 0 453 403 375 270 0 0 chr9 2518318 2518407 -139753037 - L1MC4 LINE L1 -1340 6702 6614 350 240 0 62 chr9 2518399 2518495 -139752949 + L1MC4 LINE L1 6614 6703 -1339 * 302 322 0 0 chr9 2518421 2518511 -139752933 - L1MC4 LINE L1 -1339 6703 6614 * 2970 77 0 5 chr9 2518513 2518915 -139752529 - MLT2A1 LTR ERVL -44 400 1 1531 140 29 57 chr9 2519005 2519355 -139752089 + L1MA9 LINE L1 5738 6077 -235 528 214 14 4 chr9 2519361 2519494 -139751950 + L1MA9 LINE L1 6180 6334 0 4612 239 52 11 chr9 2519502 2520646 -139750798 + L1M4b LINE L1 -372 818 -5510 281 230 63 0 chr9 2520654 2520771 -139750673 + L1M4b LINE L1 1806 1886 -4540 21379 37 12 10 chr9 2521036 2524519 -139746925 - L1PA4 LINE L1 0 6155 2667 5559 109 6 13 chr9 2524582 2525442 -139746002 + L1PA10 LINE L1 5305 6158 -10 271 173 245 43 chr9 2525465 2525481 -139745963 + L1MB8 LINE L1 5179 5190 -956 1900 181 33 33 chr9 2525481 2525845 -139745599 - THE1B LTR MaLR 0 364 1 271 173 245 43 chr9 2525845 2525967 -139745477 + L1MB8 LINE L1 5190 5345 -801 * 13454 147 37 21 chr9 2525966 2526315 -139745129 + L1PBa LINE L1 3 345 -6518 1800 94 4 33 chr9 2526315 2526560 -139744884 + AluSx SINE Alu 50 287 -25 203 0 0 36 chr9 2526564 2526592 -139744852 + (TAAAA)n Simple_repeat Simple_repeat 4 30 0 13454 147 37 21 chr9 2526592 2528749 -139742695 + L1PBa LINE L1 347 2552 -4311 12078 186 49 14 chr9 2528761 2535171 -139736273 + L1PB1 LINE L1 1 6864 -3 25 0 0 0 chr9 2535171 2535196 -139736248 + AT_rich Low_complexity Low_complexity 1 25 0 3619 179 28 43 chr9 2535203 2535348 -139736096 + L1MB8 LINE L1 5338 5484 -694 2166 122 0 3 chr9 2535348 2535642 -139735802 - AluSx SINE Alu -19 293 1 3619 179 28 43 chr9 2535642 2536347 -139735097 + L1MB8 LINE L1 5484 6175 -3 5862 49 3 0 chr9 2536567 2537284 -139734160 + L1PA7 LINE L1 5435 6153 -1 830 356 30 8 chr9 2537452 2537823 -139733621 - LTR16C LTR ERVL -11 480 102 340 236 62 35 chr9 2538543 2538687 -139732757 + MER103 DNA DNA 17 164 -2 538 281 43 0 chr9 2538752 2538891 -139732553 - MIR3 SINE MIR -51 157 13 391 239 141 33 chr9 2539252 2539436 -139732008 + MLT1J2 LTR MaLR 244 447 -3 563 337 80 52 chr9 2539697 2540391 -139731053 + L2 LINE L2 2550 3250 -22 210 118 0 0 chr9 2540623 2540657 -139730787 + (TTTG)n Simple_repeat Simple_repeat 3 36 0 277 323 42 0 chr9 2540756 2540852 -139730592 + MIR SINE MIR 16 115 -147 435 286 28 45 chr9 2541035 2541213 -139730231 - MIR SINE MIR -84 178 4 274 351 105 12 chr9 2541676 2541847 -139729597 - MIR3 SINE MIR -3 205 19 196 286 44 33 chr9 2543329 2543420 -139728024 + MIR SINE MIR 2 93 -169 182 150 25 0 chr9 2543568 2543608 -139727836 + (CATAT)n Simple_repeat Simple_repeat 3 43 0 1130 284 94 23 chr9 2544283 2544857 -139726587 + MLT1L LTR MaLR 1 615 0 224 345 12 12 chr9 2544901 2544985 -139726459 + L2 LINE L2 3180 3263 -9 392 355 26 19 chr9 2545324 2545479 -139725965 - L2 LINE L2 -1 3271 3116 2020 142 10 0 chr9 2545867 2546169 -139725275 + AluSx SINE Alu 1 305 -7 370 291 82 0 chr9 2546514 2546624 -139724820 + MIR SINE MIR 29 147 -115 1913 163 29 27 chr9 2546649 2547023 -139724421 + THE1C LTR MaLR 1 375 0 320 202 24 12 chr9 2547168 2547252 -139724192 + L1ME3A LINE L1 6077 6161 -9 23 0 0 0 chr9 2547397 2547420 -139724024 + AT_rich Low_complexity Low_complexity 1 23 0 340 264 90 0 chr9 2547548 2547692 -139723752 - L1ME4a LINE L1 -289 5832 5676 369 0 0 0 chr9 2548548 2548589 -139722855 + (CA)n Simple_repeat Simple_repeat 1 41 0 265 330 92 63 chr9 2550160 2550508 -139720936 + L2 LINE L2 2362 2719 -595 1489 217 28 12 chr9 2550821 2551180 -139720264 + MLT1A1 LTR MaLR 1 365 0 367 115 297 40 chr9 2551181 2551329 -139720115 - MER53 DNA DNA -2 187 2 384 283 83 49 chr9 2551425 2551630 -139719814 + HAL1 LINE L1 1 212 -2295 246 332 50 50 chr9 2551750 2551970 -139719474 + HAL1 LINE L1 410 629 -1878 834 250 126 57 chr9 2552045 2552588 -139718856 + HAL1 LINE L1 780 1381 -1126 537 135 21 0 chr9 2552588 2552684 -139718760 + L1MB3 LINE L1 6083 6180 -3 834 250 126 57 chr9 2552684 2552821 -139718623 + HAL1 LINE L1 1381 1507 -1000 456 175 0 0 chr9 2552838 2552918 -139718526 + MADE1 DNA Mariner 1 80 0 1872 146 24 3 chr9 2552959 2553254 -139718190 + AluSx SINE Alu 3 303 -9 196 269 115 0 chr9 2553524 2553576 -139717868 - L2 LINE L2 -1 3271 3214 2128 152 0 15 chr9 2553584 2553926 -139717518 + MER1B DNA MER1_type 1 337 0 203 325 77 41 chr9 2554069 2554263 -139717181 - L2 LINE L2 -162 3110 2910 207 384 139 17 chr9 2554459 2554631 -139716813 + L2 LINE L2 3076 3268 -4 216 274 96 14 chr9 2556920 2556993 -139714451 - L2 LINE L2 -5 3267 3189 950 307 56 14 chr9 2557009 2557364 -139714080 - MLT1I LTR MaLR 0 409 40 22 0 0 0 chr9 2557799 2557821 -139713623 + AT_rich Low_complexity Low_complexity 1 22 0 311 299 0 21 chr9 2557874 2557971 -139713473 + L1MDa LINE L1 2459 2553 -3987 840 163 0 7 chr9 2557972 2558107 -139713337 + AluJo SINE Alu 1 134 -178 536 225 45 64 chr9 2558178 2558405 -139713039 + L1MDa LINE L1 2637 2860 -3680 2222 91 3 0 chr9 2558405 2558692 -139712752 + AluSp SINE Alu 1 288 -25 536 225 45 64 chr9 2558692 2558731 -139712713 + L1MDa LINE L1 2860 2898 -3642 3001 144 44 94 chr9 2558734 2559490 -139711954 + L1MB2 LINE L1 5449 6166 -5 834 272 121 49 chr9 2559549 2560083 -139711361 - MLT1F1 LTR MaLR -1 566 1 705 266 77 29 chr9 2560085 2560473 -139710971 + L1MDa LINE L1 2952 3363 -3177 2121 88 4 0 chr9 2560473 2560746 -139710698 + AluY SINE Alu 34 307 -4 705 266 77 29 chr9 2560746 2560774 -139710670 + L1MDa LINE L1 3363 3388 -3152 5644 180 161 28 chr9 2560995 2562559 -139708885 - MER52A LTR ERV1 0 1755 6 2879 249 58 43 chr9 2562853 2565138 -139706306 - L1 LINE L1 -3534 2816 830 1999 150 10 0 chr9 2565161 2565455 -139705989 + AluSx SINE Alu 1 297 -15 28408 107 13 10 chr9 2565457 2571122 -139700322 + L1PA7 LINE L1 748 6469 0 931 278 116 10 chr9 2571350 2571746 -139699698 + HAL1 LINE L1 1530 1967 -540 1101 284 149 15 chr9 2572437 2572973 -139698471 - L1 LINE L1 -5672 609 2 467 269 52 84 chr9 2573222 2574202 -139697242 + L1MEd LINE L1 648 1692 -884 893 241 67 15 chr9 2574416 2574818 -139696626 - L1M4 LINE L1 -2751 3395 2973 600 263 32 21 chr9 2575291 2575650 -139695794 + L1MEd LINE L1 2113 2437 -3778 3153 100 0 4 chr9 2575661 2576113 -139695331 - MER9 LTR ERVK -61 450 1 1542 246 66 26 chr9 2576274 2577013 -139694431 + L1MEd LINE L1 2704 3472 -2743 192 304 18 0 chr9 2577355 2577411 -139694033 + L2 LINE L2 3214 3270 -2 1349 214 121 6 chr9 2577518 2577873 -139693571 + MSTD LTR MaLR 1 396 0 2402 124 5 22 chr9 2579930 2580300 -139691144 + THE1B LTR MaLR 1 364 0 230 356 0 26 chr9 2580943 2581058 -139690386 - L2 LINE L2 -179 3093 2982 2276 94 0 0 chr9 2582476 2582764 -139688680 - AluSg SINE Alu -22 288 1 218 319 56 14 chr9 2582847 2582919 -139688525 - L2 LINE L2 -44 3228 3154 189 292 157 0 chr9 2582948 2583037 -139688407 + L2 LINE L2 3200 3302 -11 426 238 65 38 chr9 2583548 2583733 -139687711 + L1ME4a LINE L1 5929 6118 -3 299 222 52 30 chr9 2584296 2584431 -139687013 + L1ME4a LINE L1 5984 6121 0 2353 137 72 10 chr9 2585163 2585566 -139685878 + MSTA LTR MaLR 1 428 0 224 234 0 0 chr9 2585863 2585910 -139685534 + MER91A DNA MER1_type 2 48 -148 1741 194 85 8 chr9 2586004 2586405 -139685039 + MLT1C LTR MaLR 34 465 -2 225 224 0 52 chr9 2587729 2587787 -139683657 + MIR SINE MIR 99 153 -55 199 54 54 0 chr9 2587927 2587964 -139683480 + (TTTG)n Simple_repeat Simple_repeat 2 40 0 517 197 230 0 chr9 2587968 2588120 -139683324 + MER5A DNA MER1_type 3 189 0 706 226 65 0 chr9 2588624 2588792 -139682652 - MER20 DNA MER1_type 0 219 41 2576 134 25 2 chr9 2588797 2589212 -139682232 - MSTB LTR MaLR 0 414 2 1479 221 25 43 chr9 2589518 2589962 -139681482 - LTR40b LTR ERVL 0 462 27 211 336 159 0 chr9 2589973 2590080 -139681364 + L2 LINE L2 3186 3309 -4 2142 195 86 13 chr9 2590162 2590629 -139680815 - MLT1D LTR MaLR -2 503 3 232 322 226 0 chr9 2591052 2591229 -139680215 - MIR SINE MIR -18 244 28 998 235 9 0 chr9 2591338 2591555 -139679889 + MER58A DNA MER1_type 1 219 -5 2016 183 113 33 chr9 2591555 2591995 -139679449 + MLT2B1 LTR ERVL 1 484 -36 419 35 18 0 chr9 2591995 2592052 -139679392 + (TAGA)n Simple_repeat Simple_repeat 1 58 0 2016 183 113 33 chr9 2592052 2592091 -139679353 + MLT2B1 LTR ERVL 484 518 -2 315 303 0 55 chr9 2592102 2592211 -139679233 - L1ME3A LINE L1 -105 6065 5963 395 260 1 9 chr9 2592308 2592441 -139679003 - L1ME3A LINE L1 -469 5693 5561 255 103 0 0 chr9 2592441 2592480 -139678964 + (TTTG)n Simple_repeat Simple_repeat 2 40 0 5236 154 31 23 chr9 2592480 2592729 -139678715 - L1MA5A LINE L1 -9 6288 6042 2034 151 15 0 chr9 2592729 2593060 -139678384 + MER1B DNA MER1_type 2 337 0 5236 154 31 23 chr9 2593060 2594607 -139676837 - L1MA5A LINE L1 -255 6042 4474 23 0 0 0 chr9 2594607 2594630 -139676814 + AT_rich Low_complexity Low_complexity 1 23 0 4554 144 5 1 chr9 2594630 2595398 -139676046 - L1PA13 LINE L1 -6 6157 5387 * 5751 169 8 6 chr9 2595392 2596476 -139674968 - L1PA13 LINE L1 -1315 4831 3745 9179 223 26 13 chr9 2596476 2599279 -139672165 - L1 LINE L1 -1643 5145 2349 24 32 0 0 chr9 2599285 2599316 -139672128 + AT_rich Low_complexity Low_complexity 1 31 0 10530 193 28 52 chr9 2599332 2601660 -139669784 - L1 LINE L1 -4514 2275 3 1842 257 120 45 chr9 2601700 2603482 -139667962 - L1MC/D LINE L1 -707 5444 3632 21 36 0 0 chr9 2603783 2603811 -139667633 + AT_rich Low_complexity Low_complexity 1 28 0 802 263 64 57 chr9 2603837 2604575 -139666869 - L1MC/D LINE L1 -2630 3516 2774 24 32 0 0 chr9 2604653 2604684 -139666760 + AT_rich Low_complexity Low_complexity 1 31 0 212 143 48 0 chr9 2604738 2604780 -139666664 + (TATG)n Simple_repeat Simple_repeat 4 47 0 312 304 7 22 chr9 2605633 2605771 -139665673 + CT-rich Low_complexity Low_complexity 3 138 0 583 226 0 51 chr9 2606201 2606338 -139665106 - FLAM_C SINE Alu -3 130 1 2297 116 0 3 chr9 2606656 2606959 -139664485 - AluSq SINE Alu -11 302 1 658 282 39 83 chr9 2607227 2607710 -139663734 + MLT1J LTR MaLR 23 484 -27 705 243 53 37 chr9 2607746 2607989 -139663455 + MIR SINE MIR 14 260 -2 207 0 0 0 chr9 2609263 2609286 -139662158 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 1069 152 0 6 chr9 2610204 2610369 -139661075 + AluSg/x SINE Alu 125 288 -24 1376 238 42 118 chr9 2611593 2611767 -139659677 + MLT1E LTR MaLR 5 191 -402 2408 98 3 0 chr9 2611767 2612074 -139659370 + AluSg SINE Alu 1 308 -2 1376 238 42 118 chr9 2612074 2612524 -139658920 + MLT1E LTR MaLR 191 581 -12 802 147 84 101 chr9 2614933 2615171 -139656273 + MLT1B LTR MaLR 22 255 -135 2474 180 30 8 chr9 2615559 2616053 -139655391 + MLT1D LTR MaLR 1 505 0 734 133 0 8 chr9 2616063 2616191 -139655253 + (TCCCC)n Simple_repeat Simple_repeat 3 129 0 370 308 0 0 chr9 2616584 2616675 -139654769 - MIR SINE MIR -88 174 84 310 232 62 40 chr9 2616950 2617176 -139654268 + L1MC/D LINE L1 5600 5829 -303 471 306 100 58 chr9 2617337 2617736 -139653708 + L1MC/D LINE L1 3925 4340 -1806 42 57 0 0 chr9 2617826 2617896 -139653548 + AT_rich Low_complexity Low_complexity 1 70 0 249 316 40 40 chr9 2617983 2618280 -139653164 + L1MC/D LINE L1 4549 4845 -1301 359 331 45 45 chr9 2618346 2618721 -139652723 + L1MC/D LINE L1 4903 5277 -869 956 283 73 25 chr9 2618780 2619179 -139652265 + L1MC/D LINE L1 5360 5777 -2031 22 35 0 0 chr9 2619179 2619208 -139652236 + AT_rich Low_complexity Low_complexity 1 29 0 901 193 0 0 chr9 2619209 2619370 -139652074 + MSTB LTR MaLR 1 161 -265 * 2179 184 92 2 chr9 2619361 2619797 -139651647 - LTR36 LTR ERV1 -40 571 97 4512 152 38 7 chr9 2619814 2620621 -139650823 - MSTA-int LTR MaLR -819 832 1 2250 174 48 17 chr9 2620621 2621036 -139650408 - MSTA LTR MaLR 0 428 1 313 111 122 11 chr9 2621037 2621127 -139650317 - LTR36 LTR ERV1 -511 100 1 831 167 0 0 chr9 2621127 2621265 -139650179 + MSTB LTR MaLR 287 424 -2 4343 204 47 6 chr9 2621276 2622220 -139649224 + MSTB-int LTR MaLR 5 986 -665 200 325 84 0 chr9 2622855 2622938 -139648506 - L2 LINE L2 0 3272 3183 342 307 134 22 chr9 2624365 2624544 -139646900 + L1ME LINE L1 257 455 -5615 341 177 52 21 chr9 2624737 2624833 -139646611 + L1ME LINE L1 542 640 -5440 1409 130 5 0 chr9 2624862 2625062 -139646382 + AluSx SINE Alu 1 201 -111 820 256 0 0 chr9 2625070 2625242 -139646202 - MER58A DNA MER1_type -52 172 1 1867 355 54 23 chr9 2625296 2627360 -139644084 - ERVL LTR ERVL -1151 4613 2453 315 331 14 52 chr9 2627535 2627822 -139643622 - ERVL LTR ERVL -4653 1111 836 192 345 136 9 chr9 2628926 2629036 -139642408 - L2 LINE L2 -20 3293 3170 2446 173 22 7 chr9 2629127 2629573 -139641871 + LTR32 LTR ERVL 19 471 0 612 296 36 18 chr9 2629840 2630199 -139641245 - MLT1I LTR MaLR 0 409 2 476 285 36 112 chr9 2630222 2630527 -139640917 + L2 LINE L2 2990 3271 -1 511 231 134 11 chr9 2631269 2631432 -139640012 + MER5A DNA MER1_type 4 189 0 253 277 47 27 chr9 2632293 2632441 -139639003 + L2 LINE L2 1597 1747 -1567 221 364 119 36 chr9 2632655 2633067 -139638377 + L2 LINE L2 2822 3267 -5 1930 135 0 14 chr9 2634143 2634457 -139636987 - AluSx SINE Alu 0 310 1 21 82 0 0 chr9 2635172 2635221 -139636223 + AT_rich Low_complexity Low_complexity 1 49 0 27 49 0 0 chr9 2635257 2635298 -139636146 + AT_rich Low_complexity Low_complexity 1 41 0 23 33 0 0 chr9 2635571 2635601 -139635843 + AT_rich Low_complexity Low_complexity 1 30 0 314 253 35 53 chr9 2636295 2636422 -139635022 - MIR SINE MIR -83 125 3 * 480 195 146 8 chr9 2636422 2636538 -139634906 - MER5A DNA MER1_type -15 174 42 2233 91 20 14 chr9 2636788 2637085 -139634359 - AluSq SINE Alu -14 299 1 4337 208 49 11 chr9 2637144 2637343 -139634101 - MER45B DNA AcHobo -548 1033 843 2326 88 0 0 chr9 2637343 2637638 -139633806 - AluY SINE Alu -16 295 1 4337 208 49 11 chr9 2637638 2638430 -139633014 - MER45B DNA AcHobo -738 843 4 2943 96 22 0 chr9 2638557 2638964 -139632480 + L1PA10 LINE L1 5749 6164 -4 2152 133 0 0 chr9 2640149 2640443 -139631001 - AluSg SINE Alu -16 294 1 384 310 62 31 chr9 2640487 2640713 -139630731 - L1MC/D LINE L1 -2034 5774 5542 2044 181 0 3 chr9 2640936 2641301 -139630143 + MLT2D LTR ERVL 1 364 -50 597 177 0 0 chr9 2641301 2641414 -139630030 + (TCCA)n Simple_repeat Simple_repeat 1 113 0 265 87 0 68 chr9 2641414 2641478 -139629966 + MLT2C1 LTR ERVL 355 397 0 272 273 58 65 chr9 2641519 2641794 -139629650 + L1M4 LINE L1 3951 4223 -1923 254 311 56 11 chr9 2642161 2642251 -139629193 - MIR SINE MIR -95 113 20 971 251 4 30 chr9 2642275 2642506 -139628938 - MIR SINE MIR -1 261 37 21 0 0 0 chr9 2642587 2642608 -139628836 + AT_rich Low_complexity Low_complexity 1 21 0 2327 78 0 0 chr9 2642608 2642891 -139628553 + AluY SINE Alu 1 283 -28 208 0 0 0 chr9 2642891 2642914 -139628530 + (TAAA)n Simple_repeat Simple_repeat 2 112 0 228 288 45 15 chr9 2643120 2643186 -139628258 + MIR SINE MIR 20 87 -175 662 265 26 48 chr9 2643310 2643540 -139627904 + MIR SINE MIR 36 260 -2 210 71 0 0 chr9 2644384 2644412 -139627032 + (TG)n Simple_repeat Simple_repeat 1 28 0 611 274 61 71 chr9 2644722 2645454 -139625990 + L1MC4a LINE L1 5148 5819 -302 1390 205 4 4 chr9 2645462 2645725 -139625719 + AluJo SINE Alu 32 294 -18 392 151 27 0 chr9 2645830 2645903 -139625541 + MER116 DNA Mariner 1 75 -5 21 0 0 0 chr9 2645904 2645925 -139625519 + AT_rich Low_complexity Low_complexity 1 21 0 359 265 71 109 chr9 2646193 2646431 -139625013 - MIR SINE MIR -25 237 9 776 279 59 41 chr9 2646730 2646806 -139624638 - LTR33 LTR ERVL -28 493 420 1212 162 69 0 chr9 2646806 2647010 -139624434 + MER20 DNA MER1_type 2 219 0 776 279 59 41 chr9 2647010 2647274 -139624170 - LTR33 LTR ERVL -101 420 147 612 159 102 64 chr9 2647444 2647601 -139623843 + MLT1A2 LTR MaLR 1 163 -211 193 204 0 56 chr9 2647663 2647771 -139623673 + CT-rich Low_complexity Low_complexity 6 107 0 911 184 61 31 chr9 2647771 2647967 -139623477 + MLT1A2 LTR MaLR 173 374 0 312 268 274 6 chr9 2648850 2649018 -139622426 + MIR SINE MIR 2 214 -48 366 237 140 77 chr9 2649556 2649684 -139621760 - MIR SINE MIR -9 253 106 2450 72 7 7 chr9 2649684 2649991 -139621453 + AluSc SINE Alu 1 307 -2 366 237 140 77 chr9 2649991 2650069 -139621375 - MIR SINE MIR -156 106 34 4724 157 37 21 chr9 2650621 2652532 -139618912 + L1MA2 LINE L1 15 1895 -5828 2311 113 0 0 chr9 2652532 2652833 -139618611 - AluSg SINE Alu -9 301 1 4724 157 37 21 chr9 2652833 2653861 -139617583 + L1MA2 LINE L1 1895 2906 -4817 2701 100 11 0 chr9 2653861 2654231 -139617213 - THE1C LTR MaLR -1 374 1 10400 123 14 30 chr9 2654231 2655837 -139615607 - THE1C-int LTR MaLR 0 1580 1 2188 131 50 8 chr9 2655837 2656197 -139615247 - THE1C LTR MaLR 0 375 1 4724 157 37 21 chr9 2656197 2657466 -139613978 + L1MA2 LINE L1 2906 4154 -3569 926 62 86 0 chr9 2657466 2657594 -139613850 + MER85 DNA T2_type 1 139 0 4724 157 37 21 chr9 2657594 2660807 -139610637 + L1MA2 LINE L1 4154 7723 0 467 309 186 14 chr9 2660851 2661136 -139610308 - MLT1I LTR MaLR -7 402 69 25 65 0 0 chr9 2661403 2661449 -139609995 + AT_rich Low_complexity Low_complexity 1 46 0 2244 103 3 7 chr9 2661449 2661749 -139609695 - AluSx SINE Alu -13 299 1 244 324 72 0 chr9 2663013 2663124 -139608320 + MIR SINE MIR 71 189 -73 347 241 23 0 chr9 2663580 2663667 -139607777 - MER96 DNA MER1_type? -81 94 6 285 231 0 26 chr9 2663959 2664037 -139607407 + L1MC5 LINE L1 7836 7911 -50 21 0 0 0 chr9 2664228 2664249 -139607195 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr9 2665377 2665398 -139606046 + AT_rich Low_complexity Low_complexity 1 21 0 2488 129 3 3 chr9 2665533 2665897 -139605547 + THE1B LTR MaLR 1 364 0 2066 192 117 16 chr9 2666701 2667154 -139604290 + MLT1D LTR MaLR 1 499 -6 2050 102 77 112 chr9 2667383 2667822 -139603622 + MSTA LTR MaLR 1 424 -4 304 147 147 42 chr9 2668070 2668165 -139603279 + MIR3 SINE MIR 98 202 -6 275 235 0 29 chr9 2668326 2668394 -139603050 - L2 LINE L2 0 3272 3207 768 224 12 0 chr9 2669721 2669882 -139601562 + MER69A DNA AcHobo 1 163 -14 888 158 184 11 chr9 2670144 2670334 -139601110 + MER58A DNA MER1_type 2 224 0 295 296 82 47 chr9 2670546 2670779 -139600665 + L2 LINE L2 3073 3313 0 1862 119 59 54 chr9 2670946 2671317 -139600127 + THE1C LTR MaLR 1 373 -2 885 271 54 7 chr9 2671898 2672228 -139599216 - MLT1H1 LTR MaLR -4 551 171 235 263 0 18 chr9 2675080 2675137 -139596307 - MIR3 SINE MIR -42 166 111 278 216 0 0 chr9 2677471 2677522 -139593922 + L2 LINE L2 3252 3302 -11 410 302 26 0 chr9 2677760 2677876 -139593568 + MIR SINE MIR 64 182 -80 288 239 0 14 chr9 2677925 2677996 -139593448 + HsTC2 DNA Tc2 1827 1896 -2 382 276 178 36 chr9 2678618 2678955 -139592489 + L1MC4a LINE L1 5527 5911 -1897 21 0 0 0 chr9 2678955 2678976 -139592468 + AT_rich Low_complexity Low_complexity 1 21 0 22 56 0 0 chr9 2679142 2679178 -139592266 + AT_rich Low_complexity Low_complexity 1 36 0 3925 172 80 13 chr9 2680280 2681054 -139590390 - LTR1B LTR ERV1 0 826 1 25 0 0 0 chr9 2681350 2681375 -139590069 + AT_rich Low_complexity Low_complexity 1 25 0 2376 172 63 27 chr9 2681885 2682326 -139589118 - LTR32 LTR ERVL 0 471 15 209 291 186 0 chr9 2682374 2682460 -139588984 + MIR SINE MIR 53 154 -108 1994 114 61 10 chr9 2682467 2682764 -139588680 + AluSx SINE Alu 1 312 0 676 287 137 20 chr9 2683517 2684007 -139587437 - L2 LINE L2 -1 3312 2767 329 219 13 42 chr9 2684022 2684124 -139587320 + LTR16A LTR ERVL 358 457 0 832 153 200 12 chr9 2684456 2684626 -139586818 + AluSg/x SINE Alu 71 272 -37 3171 111 12 10 chr9 2684913 2685332 -139586112 + MER4E LTR ERV1 1 503 -263 1907 141 0 0 chr9 2685332 2685608 -139585836 + AluSx SINE Alu 37 312 0 3171 111 12 10 chr9 2685608 2685871 -139585573 + MER4E LTR ERV1 503 764 -2 649 196 14 7 chr9 2686111 2686254 -139585190 - MER5A DNA MER1_type -45 144 1 305 266 124 80 chr9 2686258 2686484 -139584960 + MLT1J LTR MaLR 274 509 -2 2968 71 2 117 chr9 2687323 2687829 -139583615 - LTR7 LTR ERV1 -2 448 1 2300 102 59 13 chr9 2687829 2688202 -139583242 - HERVH LTR ERV1 0 7713 7324 1383 129 18 5 chr9 2688202 2688419 -139583025 - HERVH LTR ERV1 -1894 5819 5600 3116 127 3 2 chr9 2688420 2689040 -139582404 - HERVH LTR ERV1 -2564 5149 4481 * 6013 97 5 2 chr9 2689037 2689889 -139581555 - HERVH LTR ERV1 -3720 3993 3140 * 15343 113 23 27 chr9 2689868 2692740 -139578704 - HERVH LTR ERV1 -4718 2995 1 2826 70 123 2 chr9 2692742 2693142 -139578302 - LTR7 LTR ERV1 -2 448 1 220 310 0 23 chr9 2695443 2695530 -139575914 + GA-rich Low_complexity Low_complexity 3 87 0 2641 35 0 16 chr9 2696584 2696900 -139574544 + AluY SINE Alu 1 311 0 21 0 0 0 chr9 2696900 2696921 -139574523 + AT_rich Low_complexity Low_complexity 1 21 0 670 258 32 26 chr9 2697826 2698016 -139573428 + MIR SINE MIR 13 203 -59 773 198 48 39 chr9 2699118 2699325 -139572119 + L2 LINE L2 3104 3312 -1 282 255 97 41 chr9 2699867 2700012 -139571432 + MER103 DNA DNA 11 163 -3 1132 291 78 18 chr9 2700464 2700901 -139570543 - LTR16B LTR ERVL 0 464 2 460 186 41 105 chr9 2701067 2701260 -139570184 - MER69A DNA AcHobo 0 177 1 299 261 9 36 chr9 2701822 2701933 -139569511 + GA-rich Low_complexity Low_complexity 4 111 0 191 341 12 12 chr9 2702484 2702566 -139568878 + L2 LINE L2 3232 3313 0 652 296 105 35 chr9 2703649 2703856 -139567588 + L1MEd LINE L1 919 1110 -5200 5945 88 21 3 chr9 2703856 2704622 -139566822 + LTR17 LTR ERV1 1 780 0 652 296 105 35 chr9 2704622 2705251 -139566193 + L1MEd LINE L1 1110 1855 -4455 368 309 38 51 chr9 2706286 2706442 -139565002 + MIR SINE MIR 9 161 -69 373 213 0 13 chr9 2706616 2706691 -139564753 - MIR3 SINE MIR -15 193 120 278 253 20 40 chr9 2706878 2706977 -139564467 + MER113 DNA MER1_type? 310 406 -115 186 275 0 0 chr9 2708480 2708549 -139562895 + (CATA)n Simple_repeat Simple_repeat 4 72 0 199 333 0 31 chr9 2709030 2709126 -139562318 - L2 LINE L2 -606 2708 2616 403 269 135 55 chr9 2709298 2709581 -139561863 - MLT1I LTR MaLR -39 370 85 268 324 65 36 chr9 2710702 2710841 -139560603 - MIR3 SINE MIR -7 201 59 365 241 15 131 chr9 2711496 2711633 -139559811 + MIR3 SINE MIR 85 205 -3 21 36 0 0 chr9 2711921 2711949 -139559495 + AT_rich Low_complexity Low_complexity 1 28 0 1597 123 0 0 chr9 2711963 2712183 -139559261 - AluSq SINE Alu -93 220 1 731 273 157 37 chr9 2712885 2713350 -139558094 + LTR33 LTR ERVL 1 521 0 485 283 40 7 chr9 2713697 2713849 -139557595 + LTR33A LTR ERVL 367 523 0 456 277 117 26 chr9 2713976 2714207 -139557237 + MIR SINE MIR 11 262 0 1544 241 56 53 chr9 2715499 2715878 -139555566 + MLT1H LTR MaLR 1 427 -122 2583 89 60 20 chr9 2715878 2716228 -139555216 - THE1B LTR MaLR 0 364 1 1544 241 56 53 chr9 2716228 2716347 -139555097 + MLT1H LTR MaLR 427 544 -5 1745 227 33 85 chr9 2716750 2717318 -139554126 + MER77 LTR ERV1 85 601 -4 194 327 59 30 chr9 2717335 2717436 -139554008 + L2 LINE L2 2966 3069 -244 400 257 125 56 chr9 2717739 2717763 -139553681 - L2 LINE L2 -2 3311 3290 2332 115 0 0 chr9 2717763 2718067 -139553377 + AluSx SINE Alu 1 304 -8 400 257 125 56 chr9 2718067 2718186 -139553258 - L2 LINE L2 -23 3290 3158 1225 151 14 9 chr9 2718188 2718400 -139553044 - AluJo SINE Alu -14 298 86 558 317 42 0 chr9 2718409 2718576 -139552868 - L2 LINE L2 -160 3153 2980 2256 98 10 0 chr9 2719267 2719564 -139551880 + AluSx SINE Alu 1 300 -12 3051 197 5 17 chr9 2721001 2721590 -139549854 + L1MB7 LINE L1 5594 6175 -9 233 181 58 69 chr9 2721907 2721929 -139549515 - L1MD3 LINE L1 0 8039 8018 2235 116 7 0 chr9 2721929 2722231 -139549213 + AluSp SINE Alu 1 304 -9 233 181 58 69 chr9 2722231 2722337 -139549107 - L1MD3 LINE L1 -21 8018 7922 254 295 13 13 chr9 2722347 2722425 -139549019 + CT-rich Low_complexity Low_complexity 2 79 0 200 229 0 16 chr9 2722425 2722486 -139548958 + (TA)n Simple_repeat Simple_repeat 1 60 0 443 198 32 76 chr9 2722508 2722665 -139548779 - L1MC4 LINE L1 -156 7886 7737 1667 238 100 40 chr9 2722697 2723226 -139548218 - MLT1F1 LTR MaLR 0 567 3 3402 257 85 67 chr9 2723230 2723768 -139547676 - L1MC4a LINE L1 -195 7613 7086 1809 188 50 19 chr9 2723768 2724146 -139547298 - MLT1B LTR MaLR 0 390 1 3402 257 85 67 chr9 2724146 2724405 -139547039 - L1MC4a LINE L1 -722 7086 6833 713 136 18 0 chr9 2724405 2724515 -139546929 + L1MB5 LINE L1 6063 6174 0 3402 257 85 67 chr9 2724515 2725410 -139546034 - L1MC4a LINE L1 -975 6833 5889 195 42 0 0 chr9 2725868 2725892 -139545552 + (TC)n Simple_repeat Simple_repeat 1 24 0 189 74 0 0 chr9 2725907 2725934 -139545510 + (CA)n Simple_repeat Simple_repeat 1 27 0 2386 84 0 0 chr9 2727904 2728203 -139543241 + AluSx SINE Alu 1 299 -13 1470 250 97 24 chr9 2729638 2730186 -139541258 - L1ME3A LINE L1 -219 5951 5364 246 62 0 0 chr9 2730207 2730239 -139541205 + (TC)n Simple_repeat Simple_repeat 1 32 0 370 291 158 0 chr9 2730962 2731089 -139540355 + MER117 DNA MER1_type 1 147 -50 734 198 23 29 chr9 2731124 2731296 -139540148 + MER5B DNA MER1_type 1 171 -7 771 130 39 137 chr9 2731311 2731575 -139539869 - MER106B DNA MER1_type 0 1059 1 30 45 0 0 chr9 2731913 2731957 -139539487 + AT_rich Low_complexity Low_complexity 1 44 0 2034 158 0 0 chr9 2732098 2732408 -139539036 - AluSx SINE Alu -2 310 1 347 321 22 0 chr9 2732571 2732705 -139538739 + MIR SINE MIR 51 187 -75 1770 152 3 42 chr9 2732724 2733034 -139538410 + AluJo SINE Alu 1 298 -14 513 252 65 7 chr9 2735483 2735638 -139535806 - MER103 DNA DNA -1 165 2 563 228 55 118 chr9 2735802 2735968 -139535476 - MIR SINE MIR -10 252 77 191 59 0 29 chr9 2735968 2736002 -139535442 + (TTTG)n Simple_repeat Simple_repeat 2 34 0 2287 87 3 0 chr9 2736005 2736292 -139535152 - AluSp SINE Alu -25 288 1 563 228 55 118 chr9 2736292 2736375 -139535069 - MIR SINE MIR -187 75 15 935 235 11 0 chr9 2736754 2736941 -139534503 + MER5A DNA MER1_type 1 189 0 225 374 24 0 chr9 2736960 2737043 -139534401 - MIR SINE MIR -118 144 60 897 304 30 49 chr9 2737047 2737376 -139534068 + MLT1K LTR MaLR 2 324 -264 256 253 99 11 chr9 2737961 2738052 -139533392 - MIR SINE MIR -2 260 162 181 329 73 0 chr9 2738161 2738243 -139533201 - MIR SINE MIR -172 90 3 1969 155 3 0 chr9 2739606 2739903 -139531541 + AluJb SINE Alu 1 298 -14 271 252 225 0 chr9 2740748 2740859 -139530585 + MIR SINE MIR 57 192 -70 644 262 36 6 chr9 2741647 2741815 -139529629 - MIR3 SINE MIR -2 206 34 235 281 0 0 chr9 2742133 2742190 -139529254 + L2 LINE L2 3166 3222 -50 318 226 263 27 chr9 2742457 2742643 -139528801 + L1ME3A LINE L1 5931 6160 -10 22 70 0 0 chr9 2742667 2742710 -139528734 + AT_rich Low_complexity Low_complexity 1 43 0 4960 234 21 37 chr9 2742710 2743853 -139527591 + L1MC1 LINE L1 2115 3275 -3151 2761 23 0 0 chr9 2743853 2744155 -139527289 - AluY SINE Alu -9 302 1 4960 234 21 37 chr9 2744155 2744306 -139527138 + L1MC1 LINE L1 3275 3427 -2999 1809 133 33 0 chr9 2744306 2744576 -139526868 + AluJb SINE Alu 9 287 -25 4960 234 21 37 chr9 2744576 2745451 -139525993 + L1MC1 LINE L1 3427 4247 -2179 2845 108 13 5 chr9 2745453 2745850 -139525594 + MSTA LTR MaLR 1 400 -28 8051 31 0 0 chr9 2745850 2747452 -139523992 - L1PA4 LINE L1 0 6155 4553 6401 156 29 17 chr9 2747465 2748790 -139522654 + L1MC1 LINE L1 5272 6613 0 1504 140 42 45 chr9 2748853 2749117 -139522327 + L1PA15 LINE L1 5889 6151 -14 211 64 21 43 chr9 2749946 2749993 -139521451 + (TTTA)n Simple_repeat Simple_repeat 3 48 0 1335 272 60 8 chr9 2751197 2751561 -139519883 + LTR16C LTR ERVL 99 481 -10 378 222 0 0 chr9 2751628 2751709 -139519735 - MER57A LTR ERV1 0 403 323 406 274 41 45 chr9 2751871 2752134 -139519310 - MER57B LTR ERV1 -80 322 67 4766 133 32 1 chr9 2752228 2752948 -139518496 + Tigger2 DNA MER2_type 3 744 -1974 1401 152 19 60 chr9 2753014 2753049 -139518395 + Tigger2 DNA MER2_type 2461 2496 -222 2223 117 0 0 chr9 2753049 2753349 -139518095 - AluSx SINE Alu -12 300 1 1401 152 19 60 chr9 2753349 2753582 -139517862 + Tigger2 DNA MER2_type 2496 2718 0 643 234 102 24 chr9 2753931 2754136 -139517308 + MIR SINE MIR 10 230 -32 372 222 40 20 chr9 2755763 2755862 -139515582 - MIR3 SINE MIR 0 208 108 709 244 84 121 chr9 2756752 2757157 -139514287 - L2 LINE L2 0 3272 2883 2545 32 0 23 chr9 2757259 2757568 -139513876 + AluY SINE Alu 2 303 -8 537 330 45 5 chr9 2757568 2757789 -139513655 - Charlie8 DNA MER1_type -2187 230 1 1021 181 33 0 chr9 2757797 2757979 -139513465 + MER5A DNA MER1_type 1 188 -1 1291 200 77 0 chr9 2757989 2758289 -139513155 + MER33 DNA MER1_type 1 323 -1 182 335 88 59 chr9 2758306 2758545 -139512899 - L2 LINE L2 -486 2828 2583 816 273 0 6 chr9 2758704 2758887 -139512557 + MIR SINE MIR 12 193 -69 522 223 32 38 chr9 2759689 2759846 -139511598 + L1MC4a LINE L1 5784 5939 -1869 440 177 54 39 chr9 2759851 2759981 -139511463 - MER104 DNA Tc2 -13 167 36 1642 163 20 27 chr9 2760453 2760754 -139510690 + AluJo SINE Alu 1 299 -13 2190 120 10 0 chr9 2761076 2761376 -139510068 + AluSx SINE Alu 1 303 -9 2187 132 0 0 chr9 2762379 2762689 -139508755 + AluSx SINE Alu 1 310 -2 265 245 7 24 chr9 2762766 2762903 -139508541 + L1P3 LINE L1 5706 5833 -288 * 1740 216 41 19 chr9 2762895 2763535 -139507909 - L1ME LINE L1 -596 5570 4921 1284 201 108 2 chr9 2763539 2763998 -139507446 + L1ME1 LINE L1 5589 6164 -20 4082 233 56 43 chr9 2764039 2764348 -139507096 - L1MCb LINE L1 -3692 2872 2568 1819 172 0 10 chr9 2764348 2764650 -139506794 + AluJo SINE Alu 7 305 -7 4082 233 56 43 chr9 2764650 2766876 -139504568 - L1MCb LINE L1 -3996 2568 371 2220 139 150 5 chr9 2766876 2767250 -139504194 + MSTA LTR MaLR 1 428 0 8177 153 76 51 chr9 2767252 2767455 -139503989 + MSTA-int LTR MaLR 3 199 -1381 2279 110 0 0 chr9 2767455 2767765 -139503679 + AluY SINE Alu 2 311 0 8177 153 76 51 chr9 2767765 2769099 -139502345 + MSTA-int LTR MaLR 199 1579 -1 1934 168 129 31 chr9 2769102 2769490 -139501954 + MSTA LTR MaLR 3 428 0 4082 233 56 43 chr9 2769490 2769643 -139501801 - L1MCb LINE L1 -6194 370 6 254 174 221 0 chr9 2769764 2769850 -139501594 + L1ME4a LINE L1 6012 6116 -5 236 304 0 22 chr9 2769880 2769972 -139501472 + L1MC/D LINE L1 5813 5902 -1906 554 182 73 0 chr9 2770019 2770129 -139501315 + MER110A LTR ERV1 1 118 -350 470 174 55 9 chr9 2770222 2770331 -139501113 + MER110A LTR ERV1 355 468 0 2062 132 0 3 chr9 2770350 2770639 -139500805 - AluSx SINE Alu -19 293 6 1102 168 50 0 chr9 2771794 2771973 -139499471 - MER5A DNA MER1_type -1 188 1 198 292 101 11 chr9 2773189 2773278 -139498166 + MIR SINE MIR 104 200 -62 2281 69 7 36 chr9 2774181 2774487 -139496957 + AluY SINE Alu 1 297 -14 305 258 100 74 chr9 2774519 2774937 -139496507 + L1MC4 LINE L1 7611 8042 0 359 244 34 34 chr9 2777681 2777800 -139493644 - MER94 DNA DNA -15 119 1 435 236 47 66 chr9 2778394 2778606 -139492838 - L1MC4a LINE L1 -1971 5837 5630 1903 231 120 33 chr9 2779640 2780216 -139491228 + MLT1E2 LTR MaLR 1 626 0 653 190 0 0 chr9 2780952 2781052 -139490392 - AluS SINE Alu -212 100 1 33 25 0 0 chr9 2781123 2781163 -139490281 + AT_rich Low_complexity Low_complexity 1 40 0 1703 172 3 21 chr9 2781163 2781454 -139489990 - AluJo SINE Alu -21 291 6 632 209 98 33 chr9 2781519 2781734 -139489710 - MER96B DNA MER1_type? 0 417 189 550 217 9 0 chr9 2781784 2781890 -139489554 + MER5A DNA MER1_type 3 109 -80 2062 116 0 80 chr9 2782023 2782359 -139489085 + AluSx SINE Alu 1 309 -3 269 346 13 26 chr9 2782407 2782560 -139488884 - MIR SINE MIR -102 160 10 227 276 0 0 chr9 2782634 2782692 -139488752 + CT-rich Low_complexity Low_complexity 2 59 0 3001 138 72 23 chr9 2783271 2783827 -139487617 + L1MB2 LINE L1 5587 6169 -2 631 169 36 90 chr9 2784149 2784197 -139487247 + L1MD2 LINE L1 6186 6235 -124 2207 104 7 10 chr9 2784197 2784495 -139486949 + AluSg SINE Alu 1 297 -13 631 169 36 90 chr9 2784495 2784612 -139486832 + L1MD2 LINE L1 6235 6342 -17 2202 92 28 0 chr9 2785758 2786042 -139485402 + AluSx SINE Alu 1 292 -20 2247 106 10 3 chr9 2786054 2786365 -139485079 + AluSq SINE Alu 1 313 0 302 290 0 40 chr9 2787625 2787725 -139483719 - L1MC4 LINE L1 -1339 6703 6608 2414 71 3 0 chr9 2790997 2791294 -139480150 + AluSp SINE Alu 1 298 -15 1576 159 0 22 chr9 2791995 2792266 -139479178 + AluJb SINE Alu 5 269 -43 189 0 0 0 chr9 2792645 2792666 -139478778 + (A)n Simple_repeat Simple_repeat 1 21 0 2366 100 0 3 chr9 2792668 2792979 -139478465 + AluSp SINE Alu 1 310 -3 1930 143 3 19 chr9 2793896 2794211 -139477233 - AluJb SINE Alu -2 310 1 550 157 102 0 chr9 2795037 2795145 -139476299 + MER103 DNA DNA 2 120 -46 214 194 0 0 chr9 2795630 2795683 -139475761 + (CATA)n Simple_repeat Simple_repeat 1 53 0 221 371 124 12 chr9 2795689 2795948 -139475496 + L2 LINE L2 2384 2671 -643 271 239 65 43 chr9 2798432 2798524 -139472920 + MIR3 SINE MIR 9 102 -106 331 244 138 50 chr9 2798739 2798899 -139472545 + MIR SINE MIR 69 242 -20 2016 93 76 0 chr9 2800539 2800829 -139470615 + AluSq SINE Alu 2 313 0 190 324 121 44 chr9 2800930 2801112 -139470332 + L2 LINE L2 3077 3272 0 1196 311 153 46 chr9 2801778 2802991 -139468453 + L3 LINE CR1 213 1555 -22 577 282 4 73 chr9 2804306 2804540 -139466904 - MIR SINE MIR -42 220 3 300 206 41 14 chr9 2804627 2804700 -139466744 - Charlie8 DNA MER1_type 0 2417 2343 294 306 32 16 chr9 2804753 2804877 -139466567 - Charlie8 DNA MER1_type -2155 262 137 21 0 0 0 chr9 2805748 2805769 -139465675 + AT_rich Low_complexity Low_complexity 1 21 0 1374 103 5 5 chr9 2805898 2806082 -139465362 + U2 snRNA snRNA 4 187 -1 28 29 0 0 chr9 2809319 2809354 -139462090 + AT_rich Low_complexity Low_complexity 1 35 0 22 0 0 0 chr9 2810111 2810133 -139461311 + AT_rich Low_complexity Low_complexity 1 22 0 216 0 0 0 chr9 2810664 2810688 -139460756 + (T)n Simple_repeat Simple_repeat 1 24 0 1115 156 145 46 chr9 2811884 2812118 -139459326 + L1MB3 LINE L1 5874 6142 -41 2305 105 3 6 chr9 2812118 2812432 -139459012 + AluSp SINE Alu 1 313 0 1115 156 145 46 chr9 2812432 2812479 -139458965 + L1MB3 LINE L1 6142 6183 0 342 0 0 0 chr9 2813090 2813128 -139458316 + (A)n Simple_repeat Simple_repeat 1 38 0 2438 71 0 0 chr9 2813274 2813570 -139457874 + AluSg SINE Alu 7 302 -8 224 229 0 0 chr9 2814523 2814571 -139456873 + (CTA)n Simple_repeat Simple_repeat 2 49 0 820 264 37 16 chr9 2814591 2814837 -139456607 - MIR SINE MIR -9 253 3 6396 163 53 103 chr9 2815038 2815314 -139456130 - Tigger6b DNA MER2_type -12 1585 1297 1538 182 18 14 chr9 2815314 2815594 -139455850 - AluJo SINE Alu -31 281 1 6396 163 53 103 chr9 2815594 2815960 -139455484 - Tigger6b DNA MER2_type -300 1297 914 2094 122 6 28 chr9 2815960 2816279 -139455165 - AluSx SINE Alu 0 312 1 1830 121 27 40 chr9 2816282 2816579 -139454865 - AluSx SINE Alu -19 293 1 6396 163 53 103 chr9 2816579 2817100 -139454344 - Tigger6b DNA MER2_type -685 912 366 2031 141 3 7 chr9 2817100 2817399 -139454045 - AluSx SINE Alu -14 298 1 6396 163 53 103 chr9 2817399 2817801 -139453643 - Tigger6b DNA MER2_type -1231 366 100 2052 184 71 0 chr9 2817801 2818165 -139453279 + MLT1B LTR MaLR 1 390 0 6396 163 53 103 chr9 2818165 2818258 -139453186 - Tigger6b DNA MER2_type -1497 100 4 180 245 0 0 chr9 2818788 2818841 -139452603 + (CATATA)n Simple_repeat Simple_repeat 1 53 0 2583 102 8 25 chr9 2819130 2819307 -139452137 + THE1A LTR MaLR 1 170 -185 2080 121 13 10 chr9 2819307 2819613 -139451831 - AluSx SINE Alu -5 307 1 2583 102 8 25 chr9 2819613 2819796 -139451648 + THE1A LTR MaLR 170 355 0 1042 173 6 0 chr9 2820040 2820208 -139451236 + AluJb SINE Alu 1 169 -143 1080 32 0 0 chr9 2820231 2820355 -139451089 + L1PA4 LINE L1 6029 6152 -3 724 183 8 38 chr9 2820851 2820982 -139450462 + FRAM SINE Alu 1 127 -49 2233 89 0 7 chr9 2820990 2821283 -139450161 - AluSx SINE Alu -19 293 3 4295 103 2 0 chr9 2821788 2822341 -139449103 + MER41A LTR ERV1 1 554 0 1930 131 147 6 chr9 2822483 2822803 -139448641 + MLT1A1 LTR MaLR 1 365 0 21 0 0 0 chr9 2823380 2823401 -139448043 + AT_rich Low_complexity Low_complexity 1 21 0 2125 109 3 20 chr9 2823519 2823821 -139447623 - AluSx SINE Alu -5 307 11 1709 194 118 78 chr9 2824357 2824976 -139446468 + LTR48B LTR ERV1 1 644 0 1460 126 141 27 chr9 2826245 2826629 -139444815 + LTR54 LTR ERV1 1 510 0 192 211 70 35 chr9 2827511 2827568 -139443876 + MIR SINE MIR 108 166 -96 2057 158 12 48 chr9 2828789 2829188 -139442256 + LTR8A LTR ERV1 35 419 -308 1371 171 62 43 chr9 2829404 2829708 -139441736 + LTR8A LTR ERV1 418 727 0 419 286 8 25 chr9 2830119 2830238 -139441206 - MIR SINE MIR -70 138 22 636 289 169 16 chr9 2831055 2831363 -139440081 - L2 LINE L2 0 3313 2959 2150 132 3 0 chr9 2832362 2832665 -139438779 + AluSx SINE Alu 1 304 -8 2226 116 0 0 chr9 2832710 2833004 -139438440 + AluSg SINE Alu 2 295 -15 1858 123 0 4 chr9 2833007 2833260 -139438184 + AluSx SINE Alu 2 253 -59 299 140 80 0 chr9 2833345 2833394 -139438050 - MLT1A1 LTR MaLR 0 365 313 2934 162 30 16 chr9 2833394 2833894 -139437550 + MLT2B2 LTR ERVL 1 507 -8 1193 208 96 7 chr9 2833896 2834189 -139437255 - MLT1A1 LTR MaLR -46 319 1 320 308 10 29 chr9 2834190 2834294 -139437150 - MIR SINE MIR -90 118 17 571 277 126 26 chr9 2834762 2834993 -139436451 - MIR SINE MIR -2 260 7 1491 178 87 11 chr9 2835266 2835553 -139435891 + AluJo SINE Alu 1 309 -3 22 70 0 0 chr9 2835989 2836032 -139435412 + AT_rich Low_complexity Low_complexity 1 43 0 1582 102 5 0 chr9 2836885 2837100 -139434344 - AluSc SINE Alu -4 305 90 424 41 0 0 chr9 2837100 2837149 -139434295 - AluSc SINE Alu -261 50 2 234 176 0 0 chr9 2838105 2838156 -139433288 + L1MC4 LINE L1 6653 6703 -1339 255 81 27 0 chr9 2838460 2838497 -139432947 - tRNA-Ser-TCC tRNA tRNA -44 41 4 1843 181 0 0 chr9 2838695 2838988 -139432456 + AluJb SINE Alu 1 293 -19 1376 286 46 52 chr9 2838990 2839424 -139432020 + MER21B LTR ERV1 20 450 -413 2183 97 0 0 chr9 2839424 2839712 -139431732 - AluY SINE Alu -23 288 1 1376 286 46 52 chr9 2839712 2839976 -139431468 + MER21B LTR ERV1 450 714 -149 689 218 20 27 chr9 2840078 2840225 -139431219 + MER69 DNA AcHobo 2 147 -1079 735 249 150 48 chr9 2841098 2841492 -139429952 + MLT1J1 LTR MaLR 1 434 -12 312 320 126 48 chr9 2841823 2842132 -139429312 + L3 LINE CR1 1237 1569 -8 274 205 96 36 chr9 2842790 2842873 -139428571 - L2 LINE L2 -1 3271 3184 2289 107 0 0 chr9 2843059 2843359 -139428085 + AluSx SINE Alu 1 300 -12 379 175 164 22 chr9 2844297 2844423 -139427021 + MIR3 SINE MIR 61 202 -6 200 213 33 49 chr9 2844505 2844566 -139426878 + MIR3 SINE MIR 134 193 -15 501 269 143 45 chr9 2848273 2848581 -139422863 + MER102b DNA MER1_type 3 340 -1 844 248 71 65 chr9 2848863 2849186 -139422258 - MER102a DNA MER1_type -5 325 1 274 309 148 27 chr9 2849626 2849775 -139421669 + MIR SINE MIR 47 213 -49 23 33 0 0 chr9 2850014 2850044 -139421400 + AT_rich Low_complexity Low_complexity 1 30 0 408 200 0 12 chr9 2851662 2851742 -139419702 + Tigger5 DNA MER2_type 1 79 -2244 389 143 0 0 chr9 2851773 2851836 -139419608 + Tigger5 DNA MER2_type 2261 2323 0 186 43 0 0 chr9 2853495 2853518 -139417926 + (CA)n Simple_repeat Simple_repeat 1 23 0 453 235 71 77 chr9 2853593 2853916 -139417528 + L1ME4a LINE L1 5531 5851 -270 229 317 158 17 chr9 2854267 2854387 -139417057 + L2 LINE L2 3119 3255 -17 364 250 22 0 chr9 2854926 2855018 -139416426 - MER58 DNA MER1_type -2326 94 1 321 262 24 0 chr9 2856646 2856730 -139414714 + L2 LINE L2 3183 3268 -4 184 313 78 55 chr9 2857036 2857164 -139414280 + MER5B DNA MER1_type 27 157 -21 1990 150 0 16 chr9 2857327 2857641 -139413803 - AluJb SINE Alu 0 312 4 417 281 128 18 chr9 2857943 2858107 -139413337 + MIR SINE MIR 81 262 0 3873 141 15 3 chr9 2860439 2861051 -139410393 + LTR31 LTR ERV1 1 619 0 2028 103 33 0 chr9 2861231 2861535 -139409909 + AluSx SINE Alu 1 313 0 38 61 0 0 chr9 2861698 2861764 -139409680 + AT_rich Low_complexity Low_complexity 1 66 0 220 372 12 12 chr9 2862399 2862485 -139408959 + L2 LINE L2 3129 3214 -58 289 283 31 101 chr9 2862659 2862818 -139408626 + MIR SINE MIR 114 261 -1 2197 99 0 26 chr9 2863311 2863615 -139407829 + AluSx SINE Alu 17 312 0 32 26 0 0 chr9 2864394 2864433 -139407011 + AT_rich Low_complexity Low_complexity 1 39 0 203 302 0 0 chr9 2864927 2864980 -139406464 + L2 LINE L2 3261 3313 0 227 79 26 0 chr9 2865148 2865186 -139406258 + (TC)n Simple_repeat Simple_repeat 2 40 0 237 65 0 0 chr9 2865186 2865217 -139406227 + (CA)n Simple_repeat Simple_repeat 1 31 0 319 241 38 13 chr9 2865292 2865371 -139406073 - L2 LINE L2 -8 3305 3225 893 215 21 0 chr9 2865500 2865686 -139405758 + MER58A DNA MER1_type 35 224 0 667 292 23 88 chr9 2865695 2866126 -139405318 - L2 LINE L2 -218 3054 2649 311 0 26 0 chr9 2866677 2866716 -139404728 + (CA)n Simple_repeat Simple_repeat 2 41 0 2021 141 39 33 chr9 2867688 2868050 -139403394 + THE1B LTR MaLR 1 364 0 23 54 0 0 chr9 2868074 2868111 -139403333 + AT_rich Low_complexity Low_complexity 1 37 0 1965 147 7 7 chr9 2868128 2868428 -139403016 - AluSx SINE Alu -12 300 1 254 330 48 10 chr9 2869734 2869837 -139401607 - MIR SINE MIR -107 155 49 1970 100 30 40 chr9 2869886 2870187 -139401257 - AluSq SINE Alu -15 298 1 2333 88 0 0 chr9 2873465 2873760 -139397684 + AluSg SINE Alu 1 295 -15 383 122 22 33 chr9 2873817 2873907 -139397537 - L1MA9 LINE L1 -17 6295 6207 481 328 20 10 chr9 2874018 2874219 -139397225 - MIR SINE MIR -7 255 53 458 233 112 99 chr9 2875094 2875567 -139395877 - Charlie7 DNA MER1_type -2086 526 48 2399 238 40 42 chr9 2876971 2877749 -139393695 + L1ME1 LINE L1 5374 6149 -17 534 285 95 18 chr9 2878229 2878450 -139392994 - MIR SINE MIR -12 250 13 28 29 0 0 chr9 2879948 2879983 -139391461 + AT_rich Low_complexity Low_complexity 1 35 0 244 298 21 21 chr9 2882197 2882291 -139389153 - MIR3 SINE MIR -2 206 113 258 274 71 0 chr9 2882547 2882660 -139388784 + Charlie8 DNA MER1_type 44 164 -2253 23 0 0 0 chr9 2883314 2883337 -139388107 + AT_rich Low_complexity Low_complexity 1 23 0 423 0 0 0 chr9 2884431 2884478 -139386966 + (CA)n Simple_repeat Simple_repeat 2 48 0 405 0 0 0 chr9 2886497 2886542 -139384902 + (CA)n Simple_repeat Simple_repeat 1 45 0 218 348 59 30 chr9 2887857 2887992 -139383452 - L2 LINE L2 0 3313 3175 1039 228 39 4 chr9 2889195 2889427 -139382017 + Charlie1a DNA MER1_type 1 240 -1215 255 222 0 0 chr9 2889558 2889621 -139381823 + MER103 DNA DNA 8 70 -96 249 250 113 40 chr9 2889709 2889833 -139381611 - MER94 DNA DNA -1 133 1 2290 103 3 3 chr9 2889875 2890186 -139381258 - AluY SINE Alu 0 311 1 2211 128 0 3 chr9 2890353 2890659 -139380785 - AluSx SINE Alu -7 305 1 395 297 39 39 chr9 2891375 2891530 -139379914 - MIR SINE MIR -76 186 32 197 160 0 40 chr9 2892281 2892331 -139379113 + GA-rich Low_complexity Low_complexity 3 50 0 1218 124 0 0 chr9 2893027 2893204 -139378240 + AluSq SINE Alu 137 313 0 1906 147 7 0 chr9 2893985 2894264 -139377180 - AluJb SINE Alu -31 281 1 636 273 164 49 chr9 2895697 2896185 -139375259 + LTR67 LTR ERVL 3 546 -11 22 35 0 0 chr9 2897983 2898012 -139373432 + AT_rich Low_complexity Low_complexity 1 29 0 1260 133 10 0 chr9 2898870 2899073 -139372371 + L1PA16 LINE L1 5962 6166 0 2110 46 0 11 chr9 2899272 2899535 -139371909 - AluY SINE Alu -12 299 40 2385 77 0 0 chr9 2899782 2900079 -139371365 + AluY SINE Alu 1 297 -14 379 275 23 105 chr9 2901261 2901432 -139370012 + MIR SINE MIR 29 185 -77 523 202 9 9 chr9 2901593 2901702 -139369742 + L2 LINE L2 3205 3313 0 2362 68 0 3 chr9 2903803 2904095 -139367349 - AluY SINE Alu -20 291 1 523 303 0 0 chr9 2904536 2904678 -139366766 - MIR SINE MIR -6 256 115 318 268 94 79 chr9 2906190 2906317 -139365127 + L2 LINE L2 3137 3265 -7 23 0 0 0 chr9 2906761 2906784 -139364660 + AT_rich Low_complexity Low_complexity 1 23 0 310 185 0 0 chr9 2906800 2906865 -139364579 - L1MB3 LINE L1 -28 6155 6091 203 182 0 0 chr9 2908011 2908044 -139363400 + polypyrimidine Low_complexity Low_complexity 2 34 0 394 258 61 25 chr9 2908549 2908747 -139362697 - L1MC5 LINE L1 -54 7907 7703 288 0 0 0 chr9 2908847 2908879 -139362565 + (T)n Simple_repeat Simple_repeat 1 32 0 1862 194 11 14 chr9 2911541 2911907 -139359537 + MLT1A1 LTR MaLR 1 365 0 344 302 31 16 chr9 2911910 2912039 -139359405 + MIR3 SINE MIR 56 186 -22 260 280 93 104 chr9 2915385 2915578 -139355866 - MIR SINE MIR -48 214 24 2282 111 11 3 chr9 2915672 2916022 -139355422 + L1PA16 LINE L1 5805 6157 -9 2257 93 0 7 chr9 2916504 2916806 -139354638 - AluSx SINE Alu -12 300 1 192 77 0 0 chr9 2918649 2918675 -139352769 + (A)n Simple_repeat Simple_repeat 1 26 0 290 282 174 0 chr9 2920572 2920721 -139350723 - MIR SINE MIR -71 191 17 865 172 96 24 chr9 2920784 2920993 -139350451 + MER58A DNA MER1_type 1 224 0 42 48 0 0 chr9 2921657 2921720 -139349724 + GC_rich Low_complexity Low_complexity 1 63 0 29 70 0 0 chr9 2921797 2921854 -139349590 + GC_rich Low_complexity Low_complexity 1 57 0 329 297 39 8 chr9 2921890 2922018 -139349426 + GA-rich Low_complexity Low_complexity 4 135 0 189 307 136 0 chr9 2923024 2923112 -139348332 + L3b LINE CR1 1327 1426 -157 353 69 0 17 chr9 2923118 2923176 -139348268 + (TG)n Simple_repeat Simple_repeat 1 57 0 335 362 98 11 chr9 2923497 2923671 -139347773 + L3b LINE CR1 1392 1580 -3 662 239 0 7 chr9 2924283 2924425 -139347019 + MIR SINE MIR 58 198 -64 389 256 23 0 chr9 2926977 2927063 -139344381 + MIR SINE MIR 2 89 -173 2122 167 6 8 chr9 2927379 2927745 -139343699 + MLT1A1 LTR MaLR 1 365 0 657 129 0 0 chr9 2929127 2929243 -139342201 + (CTG)n Simple_repeat Simple_repeat 3 118 0 1105 150 59 24 chr9 2929706 2929960 -139341484 - MER33 DNA MER1_type -32 292 30 181 238 24 0 chr9 2930140 2930182 -139341262 - L2 LINE L2 -21 3292 3250 790 302 21 11 chr9 2930203 2930488 -139340956 - LTR16C LTR ERVL -9 482 195 489 303 45 11 chr9 2930661 2930839 -139340605 - MIR SINE MIR -59 203 20 303 71 0 0 chr9 2932778 2932820 -139338624 + (CA)n Simple_repeat Simple_repeat 2 43 0 2215 97 0 3 chr9 2933655 2933989 -139337455 + AluSx SINE Alu 1 333 0 1651 190 72 43 chr9 2934643 2934731 -139336713 + MLT1C LTR MaLR 1 85 -382 2355 86 3 0 chr9 2934731 2935033 -139336411 - AluSc SINE Alu -6 303 1 1651 190 72 43 chr9 2935033 2935386 -139336058 + MLT1C LTR MaLR 85 455 -12 322 351 73 26 chr9 2935508 2935699 -139335745 + MIR SINE MIR 35 234 -28 278 26 26 0 chr9 2936246 2936285 -139335159 + (TTTG)n Simple_repeat Simple_repeat 4 43 0 331 316 35 29 chr9 2937761 2937932 -139333512 + L1MC4a LINE L1 5802 5973 -1835 2045 142 18 161 chr9 2938243 2938850 -139332594 + MLT2B1 LTR ERVL 1 520 0 233 283 123 9 chr9 2941371 2941477 -139329967 + L2 LINE L2 3191 3308 -5 1767 151 16 16 chr9 2941533 2941838 -139329606 - AluJo SINE Alu -7 305 1 310 304 126 0 chr9 2942845 2942980 -139328464 + MIR3 SINE MIR 32 183 -25 184 311 59 37 chr9 2944117 2944252 -139327192 - MIR3 SINE MIR -41 167 30 256 254 0 17 chr9 2946582 2946641 -139324803 + MIR SINE MIR 98 155 -107 23 0 0 0 chr9 2951308 2951331 -139320113 + GC_rich Low_complexity Low_complexity 1 23 0 189 0 0 0 chr9 2955873 2955894 -139315550 + (CAAAAA)n Simple_repeat Simple_repeat 2 22 0 2146 125 0 0 chr9 2956917 2957220 -139314224 - AluSx SINE Alu -9 303 1 237 33 0 0 chr9 2957968 2957998 -139313446 + (TTTTG)n Simple_repeat Simple_repeat 1 30 0 355 225 163 31 chr9 2958177 2958306 -139313138 - MIR SINE MIR -28 234 89 1180 250 72 88 chr9 2958306 2958684 -139312760 + Charlie7 DNA MER1_type 1 384 -2228 2509 55 3 0 chr9 2958684 2958992 -139312452 - AluY SINE Alu -2 309 1 1180 250 72 88 chr9 2958992 2959198 -139312246 + Charlie7 DNA MER1_type 384 573 -2039 2228 105 3 16 chr9 2959198 2959512 -139311932 + AluSq SINE Alu 1 310 -3 1180 250 72 88 chr9 2959512 2959661 -139311783 + Charlie7 DNA MER1_type 573 723 -1889 402 153 137 8 chr9 2959659 2959783 -139311661 + Charlie7 DNA MER1_type 2432 2571 -41 * 225 65 0 0 chr9 2959783 2959814 -139311630 + (T)n Simple_repeat Simple_repeat 1 31 0 2289 88 3 0 chr9 2962319 2962614 -139308830 + AluSg SINE Alu 1 296 -14 333 0 0 0 chr9 2964017 2964054 -139307390 + (CCCTAA)n Simple_repeat Simple_repeat 5 41 0 22 0 0 0 chr9 2964177 2964199 -139307245 + AT_rich Low_complexity Low_complexity 1 22 0 248 200 0 27 chr9 2964346 2964421 -139307023 - L1ME4a LINE L1 -2 6119 6047 24 0 0 0 chr9 2965520 2965544 -139305900 + AT_rich Low_complexity Low_complexity 1 24 0 768 204 250 24 chr9 2965654 2965982 -139305462 - L1M4 LINE L1 -3248 2898 2497 1183 286 66 29 chr9 2966072 2966632 -139304812 - L1MC4a LINE L1 -1899 5909 5324 2453 76 0 0 chr9 2966632 2966935 -139304509 - AluY SINE Alu -8 303 1 1183 286 66 29 chr9 2966935 2966965 -139304479 - L1MC4a LINE L1 -2484 5324 5297 413 239 77 26 chr9 2967063 2967180 -139304264 + MARNA DNA Mariner 286 408 -178 206 261 31 0 chr9 2967524 2967589 -139303855 + (TATG)n Simple_repeat Simple_repeat 4 70 0 398 274 98 72 chr9 2970510 2970605 -139300839 - L1ME4a LINE L1 -223 5947 5856 931 240 34 5 chr9 2970605 2970813 -139300631 - MER58C DNA MER1_type 0 215 2 398 274 98 72 chr9 2970813 2971035 -139300409 - L1ME4a LINE L1 -314 5856 5622 266 222 111 127 chr9 2971368 2971557 -139299887 - MER102a DNA MER1_type 0 330 145 683 189 47 30 chr9 2971561 2971730 -139299714 - L1MB2 LINE L1 0 6171 6000 296 339 18 0 chr9 2972479 2972591 -139298853 - MIR SINE MIR -70 192 79 252 0 0 0 chr9 2973358 2973386 -139298058 + (TTTTTG)n Simple_repeat Simple_repeat 2 29 0 2191 118 3 0 chr9 2973587 2973883 -139297561 + AluSx SINE Alu 1 297 -15 242 329 24 0 chr9 2974173 2974255 -139297189 + MIR SINE MIR 179 262 0 222 329 200 0 chr9 2974538 2974678 -139296766 + MIR3 SINE MIR 20 187 -21 246 94 0 0 chr9 2975581 2975613 -139295831 + U6 snRNA snRNA 1 32 -75 753 212 35 6 chr9 2975894 2976064 -139295380 - MER5A DNA MER1_type -11 178 4 189 148 0 0 chr9 2976250 2976277 -139295167 + L2 LINE L2 3263 3289 -24 210 143 0 0 chr9 2976450 2976485 -139294959 - MIR SINE MIR -14 248 214 1291 267 122 13 chr9 2979176 2979554 -139291890 - MLT1G1 LTR MaLR -176 419 1 1822 161 10 22 chr9 2980643 2980954 -139290490 - AluJo SINE Alu -5 307 1 2363 82 0 0 chr9 2981049 2981342 -139290102 - AluY SINE Alu -18 293 1 487 110 0 0 chr9 2982097 2982170 -139289274 + Alu SINE Alu 235 307 -3 501 224 179 0 chr9 2982922 2983078 -139288366 - MIR SINE MIR -76 186 3 452 219 67 37 chr9 2983265 2983444 -139288000 - MER104 DNA Tc2 -3 177 1 2462 57 7 0 chr9 2983657 2983958 -139287486 + AluY SINE Alu 1 303 -8 240 221 0 73 chr9 2983961 2983997 -139287447 + Tigger5 DNA MER2_type 1 31 -335 2023 141 0 0 chr9 2983997 2984281 -139287163 - AluSx SINE Alu -16 296 13 240 221 0 73 chr9 2984281 2984312 -139287132 + Tigger5 DNA MER2_type 31 63 -303 2315 56 10 3 chr9 2985338 2985626 -139285818 + AluY SINE Alu 1 290 -21 284 284 210 62 chr9 2986279 2986779 -139284665 + HAL1 LINE L1 1 574 -1933 291 274 146 46 chr9 2986802 2987152 -139284292 + HAL1 LINE L1 654 1038 -1469 1118 209 25 4 chr9 2987173 2987408 -139284036 + AluJb SINE Alu 68 307 -5 1389 250 113 53 chr9 2987411 2988094 -139283350 + HAL1 LINE L1 1095 1818 -689 814 190 42 60 chr9 2988211 2988427 -139283017 - MLT1L LTR MaLR -7 608 397 644 256 207 33 chr9 2988851 2989301 -139282143 + HAL1 LINE L1 1956 2483 -24 192 287 35 46 chr9 2990228 2990315 -139281129 + L2 LINE L2 3019 3104 -168 188 178 67 67 chr9 2991063 2991108 -139280336 + L2 LINE L2 3142 3186 -86 728 266 13 42 chr9 2991269 2991506 -139279938 + MIR SINE MIR 30 259 -3 488 320 136 19 chr9 2991963 2992169 -139279275 - MIR SINE MIR -15 247 18 281 33 101 0 chr9 2992548 2992592 -139278852 + MLT2A1 LTR ERVL 402 444 0 * 419 205 68 43 chr9 2992592 2992708 -139278736 - LTR8 LTR ERV1 -572 119 1 388 300 7 57 chr9 2992738 2992878 -139278566 - MIR3 SINE MIR -31 177 45 2234 117 45 48 chr9 2994000 2994376 -139277068 - THE1C LTR MaLR 0 375 1 988 198 82 97 chr9 2994449 2994903 -139276541 - LTR37B LTR ERV1 -16 452 6 313 338 76 6 chr9 2995049 2995206 -139276238 - MIR SINE MIR -55 207 40 2213 92 0 0 chr9 2995295 2995577 -139275867 + AluY SINE Alu 1 282 -29 210 143 0 0 chr9 3097061 3097096 -139174348 + MIR SINE MIR 214 248 -14 188 148 0 0 chr9 3097269 3097296 -139174148 - L2 LINE L2 -24 3289 3263 229 94 0 0 chr9 3097763 3097795 -139173649 - U6 snRNA snRNA -75 32 1 216 329 200 0 chr9 3098698 3098838 -139172606 - MIR3 SINE MIR -21 187 20 243 329 24 0 chr9 3099121 3099203 -139172241 - MIR SINE MIR 0 262 179 2195 118 3 0 chr9 3099493 3099789 -139171655 - AluSx SINE Alu -15 297 1 252 0 0 0 chr9 3099990 3100018 -139171426 + (CAAAAA)n Simple_repeat Simple_repeat 2 29 0 307 339 18 0 chr9 3100785 3100897 -139170547 + MIR SINE MIR 79 192 -70 588 138 62 8 chr9 3101683 3101813 -139169631 + L1MB2 LINE L1 6033 6169 -2 312 298 93 15 chr9 3102453 3102562 -139168882 + L1ME3A LINE L1 5727 5826 -344 843 240 34 5 chr9 3102562 3102770 -139168674 + MER58C DNA MER1_type 2 215 0 312 298 93 15 chr9 3102770 3102865 -139168579 + L1ME3A LINE L1 5826 5947 -223 206 261 31 0 chr9 3105786 3105851 -139165593 + (CATA)n Simple_repeat Simple_repeat 4 70 0 366 239 77 26 chr9 3106195 3106312 -139165132 - MARNA DNA Mariner -178 408 286 961 289 66 29 chr9 3106410 3106440 -139165004 + L1MC4a LINE L1 5297 5324 -2484 2382 82 0 0 chr9 3106440 3106743 -139164701 + AluY SINE Alu 1 303 -8 961 289 66 29 chr9 3106743 3107303 -139164141 + L1MC4a LINE L1 5324 5909 -1899 671 236 94 29 chr9 3107393 3107669 -139163775 + L1M4 LINE L1 2497 2790 -3356 24 0 0 0 chr9 3107831 3107855 -139163589 + AT_rich Low_complexity Low_complexity 1 24 0 262 143 14 100 chr9 3107959 3108099 -139163345 + (TTATA)n Simple_repeat Simple_repeat 1 128 0 22 0 0 0 chr9 3109177 3109199 -139162245 + AT_rich Low_complexity Low_complexity 1 22 0 333 0 0 0 chr9 3109322 3109359 -139162085 + (TTAGGG)n Simple_repeat Simple_repeat 5 41 0 2277 88 3 0 chr9 3110761 3111056 -139160388 - AluSg SINE Alu -14 296 1 22 35 0 0 chr9 3112106 3112135 -139159309 + AT_rich Low_complexity Low_complexity 1 29 0 902 197 53 61 chr9 3113028 3113256 -139158188 - MIR SINE MIR -30 232 7 1698 188 7 16 chr9 3113309 3113617 -139157827 - AluJo SINE Alu -7 305 1 301 215 89 13 chr9 3115332 3115411 -139156033 + MIR SINE MIR 178 262 0 321 272 88 24 chr9 3117483 3117608 -139153836 - MIR SINE MIR -12 250 118 192 284 68 14 chr9 3117707 3117781 -139153663 + MIR SINE MIR 185 262 0 593 296 35 6 chr9 3119852 3120021 -139151423 - MIR SINE MIR -41 221 48 192 77 0 0 chr9 3120290 3120316 -139151128 + (A)n Simple_repeat Simple_repeat 1 26 0 1868 151 13 23 chr9 3120407 3120706 -139150738 + AluJb SINE Alu 1 296 -16 264 264 103 35 chr9 3121922 3122009 -139149435 + L2 LINE L2 3149 3241 -31 222 37 0 0 chr9 3122076 3122103 -139149341 + (TG)n Simple_repeat Simple_repeat 2 28 0 501 134 47 12 chr9 3125114 3125284 -139146160 - L1MD3 LINE L1 -13 7982 7755 2992 204 58 133 chr9 3125311 3125545 -139145899 - L1MD3 LINE L1 -346 7462 7212 331 269 65 0 chr9 3125545 3125653 -139145791 - MLT1F1 LTR MaLR -452 115 1 2992 204 58 133 chr9 3125653 3126577 -139144867 - L1MD3 LINE L1 -596 7212 6291 1776 133 68 11 chr9 3126583 3126847 -139144597 + AluSx SINE Alu 7 285 -27 494 284 14 14 chr9 3126847 3126988 -139144456 - L1MD3 LINE L1 -701 7294 7154 993 260 66 27 chr9 3127004 3127411 -139144033 - L1MC3 LINE L1 -1500 6285 5863 802 264 60 87 chr9 3127840 3128276 -139143168 + L2 LINE L2 2105 2528 -786 252 333 49 24 chr9 3128423 3128546 -139142898 + L2 LINE L2 2746 2871 -443 2682 36 0 0 chr9 3128847 3129154 -139142290 - AluY SINE Alu -4 307 1 391 288 106 7 chr9 3129760 3129962 -139141482 + MIR SINE MIR 2 262 0 191 77 0 0 chr9 3130038 3130064 -139141380 - MIR SINE MIR -117 145 120 968 226 102 37 chr9 3130065 3130468 -139140976 - MLT1C LTR MaLR -33 434 6 180 247 173 12 chr9 3130692 3130773 -139140671 - MIR SINE MIR -42 220 127 461 264 39 0 chr9 3131544 3131673 -139139771 + MIR SINE MIR 81 214 -48 2134 118 7 3 chr9 3131742 3132047 -139139397 + AluSx SINE Alu 1 306 -6 370 294 115 23 chr9 3132051 3132269 -139139175 - MLT1L LTR MaLR -18 597 360 509 283 88 0 chr9 3132606 3132765 -139138679 - MER5B DNA MER1_type -2 176 4 2066 108 35 0 chr9 3132789 3133077 -139138367 - AluSx SINE Alu -14 298 1 5775 53 10 3 chr9 3134222 3134951 -139136493 + L1PA5 LINE L1 5420 6153 -1 786 156 7 22 chr9 3135071 3135206 -139136238 - FLAM_C SINE Alu 0 133 1 762 364 24 12 chr9 3135259 3135685 -139135759 - LTR16B LTR ERVL 0 464 34 1763 349 31 35 chr9 3135750 3137179 -139134265 - ERVL LTR ERVL -17 5317 3979 689 287 7 6 chr9 3137208 3137495 -139133949 - ERVL LTR ERVL -2852 2912 2565 1082 270 59 23 chr9 3137515 3137956 -139133488 - HERV16 LTR ERVL -3855 1141 685 1246 276 53 29 chr9 3137983 3138436 -139133008 - LTR16C LTR ERVL -27 464 1 3351 153 23 22 chr9 3138759 3139296 -139132148 + MER7C DNA MER2_type 1 541 -2487 2571 58 0 0 chr9 3139296 3139604 -139131840 - AluY SINE Alu -3 308 1 3351 153 23 22 chr9 3139604 3139667 -139131777 + MER7C DNA MER2_type 541 602 0 317 284 30 8 chr9 3140778 3140912 -139130532 + GA-rich Low_complexity Low_complexity 5 141 0 1761 162 10 23 chr9 3140915 3141217 -139130227 + AluJo SINE Alu 1 298 -14 337 174 0 23 chr9 3141217 3141303 -139130141 + GA-rich Low_complexity Low_complexity 2 85 0 1353 267 144 11 chr9 3141840 3142501 -139128943 - L2 LINE L2 -2 3311 2549 1115 242 11 0 chr9 3143323 3143596 -139127848 - Charlie4a DNA MER1_type -32 476 201 21 82 0 0 chr9 3143613 3143662 -139127782 + AT_rich Low_complexity Low_complexity 1 49 0 200 315 0 0 chr9 3143668 3143722 -139127722 + T-rich Low_complexity Low_complexity 2 55 0 2211 119 3 3 chr9 3143738 3144050 -139127394 + AluSq SINE Alu 1 312 -1 39 22 0 0 chr9 3144061 3144107 -139127337 + AT_rich Low_complexity Low_complexity 1 46 0 258 56 0 0 chr9 3144109 3144145 -139127299 + (TA)n Simple_repeat Simple_repeat 2 37 0 1739 187 0 13 chr9 3144370 3144670 -139126774 + AluJo SINE Alu 4 299 -13 213 163 0 0 chr9 3144766 3144815 -139126629 + (TA)n Simple_repeat Simple_repeat 2 50 0 23 0 0 0 chr9 3144843 3144866 -139126578 + AT_rich Low_complexity Low_complexity 1 23 0 23 33 0 0 chr9 3144916 3144946 -139126498 + AT_rich Low_complexity Low_complexity 1 30 0 342 354 161 32 chr9 3144975 3145447 -139125997 + L3 LINE CR1 1 533 -1044 466 350 75 52 chr9 3145606 3146141 -139125303 + L3 LINE CR1 980 1526 -51 2287 94 0 3 chr9 3146213 3146510 -139124934 + AluSq SINE Alu 6 301 -12 29 60 0 0 chr9 3146746 3146796 -139124648 + AT_rich Low_complexity Low_complexity 1 50 0 180 262 24 0 chr9 3146811 3146853 -139124591 + L3 LINE CR1 1533 1575 -2 257 172 151 0 chr9 3147188 3147281 -139124163 - L1ME LINE L1 -374 5788 5682 21 0 0 0 chr9 3147315 3147336 -139124108 + AT_rich Low_complexity Low_complexity 1 21 0 252 311 67 17 chr9 3147618 3147737 -139123707 - L1ME3A LINE L1 -28 6142 6018 2495 152 16 28 chr9 3148735 3149168 -139122276 + MSTA LTR MaLR 1 428 0 2654 92 20 8 chr9 3149232 3149625 -139121819 + L1PA13 LINE L1 5764 6161 -2 248 267 187 0 chr9 3150751 3150826 -139120618 - L1ME LINE L1 -521 5600 5512 2137 91 0 70 chr9 3151419 3151604 -139119840 - AluSg SINE Alu -4 306 152 207 0 0 0 chr9 3151604 3151627 -139119817 + (TA)n Simple_repeat Simple_repeat 2 24 0 2137 91 0 70 chr9 3151627 3151770 -139119674 - AluSg SINE Alu -158 152 1 1899 176 47 29 chr9 3152594 3153002 -139118442 - MLT1C LTR MaLR -2 465 51 180 0 0 0 chr9 3153020 3153040 -139118404 + (TTTA)n Simple_repeat Simple_repeat 2 21 0 2269 87 10 10 chr9 3153047 3153347 -139118097 - AluSc SINE Alu -9 300 1 1910 100 46 0 chr9 3153347 3153608 -139117836 - L1PA15 LINE L1 -12 6153 5881 340 323 43 18 chr9 3156161 3156244 -139115200 - MIR SINE MIR -32 230 151 1585 140 23 57 chr9 3156244 3156544 -139114900 - AluJo SINE Alu -10 302 13 340 323 43 18 chr9 3156544 3156624 -139114820 - MIR SINE MIR -111 151 63 368 314 36 6 chr9 3157096 3157267 -139114177 + MIR SINE MIR 40 213 -49 189 273 23 0 chr9 3157326 3157370 -139114074 - L2 LINE L2 -86 3186 3142 302 361 87 21 chr9 3157458 3157699 -139113745 + L3 LINE CR1 1273 1529 -48 287 310 120 6 chr9 3157799 3157957 -139113487 + L2 LINE L2 2222 2397 -917 204 239 0 22 chr9 3158680 3158726 -139112718 + (TAGG)n Simple_repeat Simple_repeat 2 46 0 194 62 31 0 chr9 3159303 3159335 -139112109 + (CA)n Simple_repeat Simple_repeat 1 33 0 267 336 9 0 chr9 3161523 3161633 -139109811 + CT-rich Low_complexity Low_complexity 4 114 0 1730 298 132 24 chr9 3163263 3164130 -139107314 + L2 LINE L2 1735 2694 -620 395 276 124 39 chr9 3164153 3164410 -139107034 + L2 LINE L2 2923 3201 -112 1080 279 19 52 chr9 3164433 3164856 -139106588 - MLT1I LTR MaLR 0 409 1 186 239 43 0 chr9 3164857 3164903 -139106541 + L2 LINE L2 3265 3312 -1 322 260 67 0 chr9 3165472 3165576 -139105868 - MIR SINE MIR -48 214 104 634 197 170 0 chr9 3165974 3166121 -139105323 + MER5A DNA MER1_type 9 180 -9 193 260 13 65 chr9 3166066 3166143 -139105301 - MER5A DNA MER1_type -114 75 3 * 201 147 0 0 chr9 3166740 3166774 -139104670 + (TGAA)n Simple_repeat Simple_repeat 2 35 0 510 343 59 9 chr9 3167167 3167386 -139104058 - MIR SINE MIR -31 231 2 536 113 0 0 chr9 3167521 3167592 -139103852 + AluY SINE Alu 13 83 -227 374 319 125 7 chr9 3167592 3167736 -139103708 + MER45C DNA AcHobo 440 600 -353 1453 72 88 5 chr9 3167796 3167989 -139103455 + AluSc SINE Alu 85 293 -16 1160 163 59 0 chr9 3168226 3168447 -139102997 - L1MA4 LINE L1 -5 6295 6062 3070 90 10 15 chr9 3168476 3168887 -139102557 - L1PA10 LINE L1 -5 6163 5755 1687 292 102 30 chr9 3169084 3169660 -139101784 + MER45C DNA AcHobo 16 633 -320 270 254 0 0 chr9 3169655 3169710 -139101734 + MER45C DNA AcHobo 899 953 0 * 230 271 0 29 chr9 3170014 3170084 -139101360 - L2 LINE L2 0 3313 3246 546 284 82 16 chr9 3170252 3170509 -139100935 + MLT1L LTR MaLR 3 276 -339 669 228 64 0 chr9 3170529 3170700 -139100744 + MIR SINE MIR 17 198 -64 14342 230 48 7 chr9 3170703 3174587 -139096857 + L1PA16 LINE L1 1485 5525 -641 2645 136 18 0 chr9 3174587 3174974 -139096470 + L1PA16 LINE L1 5760 6157 -9 1461 178 73 0 chr9 3174997 3175272 -139096172 - AluJo SINE Alu -17 295 1 237 237 17 0 chr9 3175395 3175454 -139095990 + MIR SINE MIR 186 245 -17 611 235 72 21 chr9 3175570 3175789 -139095655 + MLT1L LTR MaLR 266 601 -14 310 106 43 0 chr9 3176053 3176100 -139095344 - MLT2C2 LTR ERVL 0 464 416 240 200 0 0 chr9 3176144 3176199 -139095245 + (TA)n Simple_repeat Simple_repeat 2 56 0 2024 169 118 25 chr9 3176199 3176638 -139094806 - MLT2B1 LTR ERVL -40 480 1 419 271 66 12 chr9 3177101 3177267 -139094177 + MER117 DNA MER1_type 13 187 -10 426 312 35 70 chr9 3177364 3177733 -139093711 - L2 LINE L2 0 3272 2917 44270 43 3 11 chr9 3178284 3182572 -139088872 - L1PA4 LINE L1 0 6155 1928 7929 36 1 0 chr9 3182572 3183591 -139087853 + L1PA3 LINE L1 5132 6152 -3 44270 43 3 11 chr9 3183591 3185504 -139085940 - L1PA4 LINE L1 -4227 1928 3 21 0 0 0 chr9 3185525 3185546 -139085898 + AT_rich Low_complexity Low_complexity 1 21 0 202 328 15 0 chr9 3186533 3186600 -139084844 + CT-rich Low_complexity Low_complexity 5 72 0 289 322 76 18 chr9 3186755 3186926 -139084518 + L2 LINE L2 2881 3061 -252 638 189 39 71 chr9 3186966 3187206 -139084238 - L1MC4 LINE L1 -18 6148 5979 1244 184 0 0 chr9 3187213 3187419 -139084025 - AluJb SINE Alu -15 297 92 2651 220 50 54 chr9 3187419 3188640 -139082804 - L1ME1 LINE L1 -199 5967 4724 1792 155 6 43 chr9 3188703 3189026 -139082418 - AluJb SINE Alu -1 311 1 397 262 28 19 chr9 3189080 3189187 -139082257 + L2 LINE L2 3205 3312 -1 270 362 28 28 chr9 3189822 3189999 -139081445 + L2 LINE L2 3099 3275 -38 211 203 188 16 chr9 3190517 3190581 -139080863 - MIR SINE MIR -10 252 178 391 236 112 45 chr9 3191106 3191284 -139080160 - MIR SINE MIR -6 256 67 373 280 61 23 chr9 3191944 3192076 -139079368 - MIR3 SINE MIR -22 186 50 387 279 111 68 chr9 3193015 3193591 -139077853 - L1ME4a LINE L1 -2 6119 5519 1370 216 17 11 chr9 3193593 3193880 -139077564 - AluJo SINE Alu -20 292 4 230 208 132 0 chr9 3194038 3194091 -139077353 + L1MC3 LINE L1 7481 7540 -245 244 261 34 11 chr9 3195481 3195569 -139075875 + Charlie7 DNA MER1_type 1 90 -2522 1207 256 62 9 chr9 3195591 3195931 -139075513 + MLT1C LTR MaLR 6 363 -104 22 56 0 0 chr9 3195957 3195993 -139075451 + AT_rich Low_complexity Low_complexity 1 36 0 321 283 9 9 chr9 3196778 3196884 -139074560 + (TATATG)n Simple_repeat Simple_repeat 2 107 0 459 0 0 0 chr9 3196887 3196938 -139074506 + (TG)n Simple_repeat Simple_repeat 2 52 0 311 248 8 34 chr9 3196974 3197091 -139074353 + Charlie7 DNA MER1_type 2498 2611 -1 255 288 32 64 chr9 3197636 3197761 -139073683 - MIR SINE MIR -128 134 14 207 100 0 0 chr9 3198353 3198383 -139073061 + (T)n Simple_repeat Simple_repeat 1 30 0 223 286 0 0 chr9 3198383 3198439 -139073005 + L3 LINE CR1 256 311 -1266 244 273 36 95 chr9 3199216 3199469 -139071975 + L1MC4a LINE L1 5802 6039 -1769 1035 350 119 25 chr9 3199485 3200504 -139070940 + L3 LINE CR1 298 1411 -166 748 324 68 39 chr9 3200523 3201036 -139070408 + L1MC4a LINE L1 5377 5904 -1904 324 209 30 0 chr9 3201229 3201296 -139070148 + L3 LINE CR1 1399 1467 -110 2105 117 3 7 chr9 3202250 3202548 -139068896 + AluSg SINE Alu 1 297 -13 268 318 26 3 chr9 3202548 3202703 -139068741 - MIR SINE MIR -15 247 49 796 158 8 24 chr9 3203292 3203419 -139068025 - AluJo SINE Alu -105 207 83 22 35 0 0 chr9 3203422 3203451 -139067993 + AT_rich Low_complexity Low_complexity 1 29 0 295 273 39 47 chr9 3205199 3205327 -139066117 + MIR SINE MIR 78 204 -58 399 338 25 25 chr9 3205589 3205749 -139065695 + L2 LINE L2 3110 3269 -3 951 332 47 3 chr9 3205875 3206258 -139065186 + MLT1I LTR MaLR 3 402 -7 225 303 30 0 chr9 3206588 3206654 -139064790 + MIR SINE MIR 186 253 -9 479 261 49 35 chr9 3206729 3206871 -139064573 + MIR SINE MIR 8 151 -111 184 217 150 0 chr9 3207289 3207349 -139064095 - MIR SINE MIR 0 262 194 306 0 0 0 chr9 3207418 3207452 -139063992 + (TG)n Simple_repeat Simple_repeat 2 35 0 943 313 40 52 chr9 3207484 3207989 -139063455 + MLT1K LTR MaLR 77 575 -13 200 211 0 0 chr9 3208392 3208430 -139063014 + (TGAA)n Simple_repeat Simple_repeat 3 40 0 1865 141 0 0 chr9 3208797 3209090 -139062354 + AluJb SINE Alu 14 306 0 378 257 6 26 chr9 3209413 3209587 -139061857 - MER63A DNA MER1_type -2 208 1 655 75 0 0 chr9 3209598 3209678 -139061766 - MADE1 DNA Mariner 0 80 1 765 280 20 0 chr9 3209790 3209990 -139061454 + MIR SINE MIR 58 261 -1 218 272 25 49 chr9 3210033 3210114 -139061330 + MER5B DNA MER1_type 2 80 -98 3234 83 30 0 chr9 3210607 3211039 -139060405 - L1PA7 LINE L1 -1778 4368 3924 7817 82 6 2 chr9 3211039 3212813 -139058631 + L1PA7 LINE L1 4376 6154 0 295 116 0 0 chr9 3213353 3213396 -139058048 + MADE1 DNA Mariner 1 43 -37 218 236 0 14 chr9 3213413 3213485 -139057959 + GA-rich Low_complexity Low_complexity 3 73 0 274 321 102 15 chr9 3213528 3213665 -139057779 - MER5B DNA MER1_type -26 152 4 210 240 0 20 chr9 3214457 3214507 -139056937 + GA-rich Low_complexity Low_complexity 2 50 0 1817 183 37 0 chr9 3214878 3215200 -139056244 - L1MB1 LINE L1 -5 6163 5830 3402 190 25 40 chr9 3215261 3216009 -139055435 - L1PA14 LINE L1 -3 6158 5422 578 325 104 21 chr9 3216450 3216924 -139054520 + MLT1K LTR MaLR 52 584 -4 314 158 0 0 chr9 3218374 3218431 -139053013 + MER52A LTR ERV1 2 58 -1697 6543 180 130 8 chr9 3219173 3220615 -139050829 + MER52A LTR ERV1 46 1753 -2 1749 107 51 4 chr9 3220741 3220994 -139050450 - AluSq SINE Alu -48 265 1 268 393 51 9 chr9 3221940 3222276 -139049168 + HERV16 LTR ERVL 1023 1372 -3624 1081 337 80 18 chr9 3222341 3223020 -139048424 + HERV16 LTR ERVL 1512 2232 -3422 454 271 24 59 chr9 3223041 3223211 -139048233 - MIR SINE MIR -98 164 1 1541 240 272 25 chr9 3223965 3225055 -139046389 - L2 LINE L2 -10 3303 1927 23 0 0 0 chr9 3225323 3225346 -139046098 + AT_rich Low_complexity Low_complexity 1 23 0 908 274 42 33 chr9 3225359 3225695 -139045749 + L1ME LINE L1 5384 5722 -399 180 0 0 0 chr9 3225913 3225933 -139045511 + (CAAAA)n Simple_repeat Simple_repeat 2 21 0 2227 267 192 39 chr9 3226050 3227501 -139043943 - L2 LINE L2 -1 3312 1649 857 139 46 13 chr9 3228565 3228716 -139042728 + MER20 DNA MER1_type 2 157 -62 531 281 108 25 chr9 3229717 3229920 -139041524 - MIR SINE MIR 0 262 43 843 249 182 44 chr9 3230218 3230675 -139040769 + HAL1 LINE L1 1230 1749 -758 1122 224 102 63 chr9 3230838 3231033 -139040411 + HAL1 LINE L1 1996 2182 -325 1347 197 66 16 chr9 3231033 3231353 -139040091 + MER46C DNA MER2_type 2 337 -1 1122 224 102 63 chr9 3231353 3231649 -139039795 + HAL1 LINE L1 2182 2506 -1 333 321 15 22 chr9 3232418 3232555 -139038889 + MIR SINE MIR 17 152 -110 933 135 47 57 chr9 3232574 3232766 -139038678 - MER20 DNA MER1_type -7 212 23 358 299 43 37 chr9 3232999 3233163 -139038281 - MIR3 SINE MIR -9 199 35 203 319 14 0 chr9 3233845 3233914 -139037530 + (TATG)n Simple_repeat Simple_repeat 2 71 0 910 189 0 12 chr9 3234020 3234184 -139037260 - AluJb SINE Alu -9 303 142 23 0 0 0 chr9 3234312 3234335 -139037109 + AT_rich Low_complexity Low_complexity 1 23 0 30 27 0 0 chr9 3235498 3235535 -139035909 + AT_rich Low_complexity Low_complexity 1 37 0 1865 147 17 10 chr9 3235540 3235833 -139035611 + AluSx SINE Alu 1 295 -17 289 294 85 7 chr9 3236237 3236390 -139035054 - L1ME LINE L1 -304 5817 5653 266 271 0 0 chr9 3236394 3236464 -139034980 - L1ME LINE L1 -499 5622 5553 451 373 12 12 chr9 3236912 3237081 -139034363 + MIR3 SINE MIR 31 199 -9 419 250 61 14 chr9 3237133 3237281 -139034163 - MER103 DNA DNA -1 165 11 277 211 0 79 chr9 3237892 3237968 -139033476 - MER4-int LTR ERV1 -5431 1167 1098 471 311 24 6 chr9 3238197 3238361 -139033083 + MIR SINE MIR 23 189 -73 256 242 32 0 chr9 3238694 3238789 -139032655 + L1ME LINE L1 5708 5805 -316 811 132 0 41 chr9 3238797 3238918 -139032526 - FLAM_C SINE Alu -16 127 12 1963 254 175 37 chr9 3239422 3240518 -139030926 + HAL1b LINE L1 102 1348 0 679 289 55 42 chr9 3241249 3241629 -139029815 + HAL1 LINE L1 1283 1667 -840 2148 112 14 0 chr9 3241775 3242070 -139029374 - AluSx SINE Alu -13 299 1 231 163 0 0 chr9 3242265 3242308 -139029136 + HAL1b LINE L1 781 823 -525 269 357 31 0 chr9 3242741 3242870 -139028574 - MIR3 SINE MIR -13 195 63 261 0 0 0 chr9 3243199 3243228 -139028216 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 239 383 150 0 chr9 3243746 3243866 -139027578 + L2 LINE L2 3125 3262 -10 1003 210 110 0 chr9 3244219 3244509 -139026935 + LTR37A LTR ERV1 105 426 0 207 0 0 0 chr9 3244596 3244619 -139026825 + (TG)n Simple_repeat Simple_repeat 2 24 0 732 284 48 8 chr9 3244619 3244869 -139026575 + MIR SINE MIR 1 260 -2 928 281 53 81 chr9 3245036 3245544 -139025900 + MLT1J LTR MaLR 1 494 -17 1922 149 0 7 chr9 3245648 3245944 -139025500 - AluJo SINE Alu -12 300 7 244 325 36 0 chr9 3246424 3246507 -139024937 - MIR SINE MIR -65 197 112 228 232 10 81 chr9 3248210 3248309 -139023135 - MIR3 SINE MIR -11 197 106 228 360 126 18 chr9 3249201 3249312 -139022132 - L2 LINE L2 -23 3249 3127 671 289 64 40 chr9 3249317 3249482 -139021962 - MIR SINE MIR 0 262 88 2603 178 26 2 chr9 3249482 3249936 -139021508 + MLT1C LTR MaLR 2 466 -1 671 289 64 40 chr9 3249936 3250019 -139021425 - MIR SINE MIR -174 88 8 1373 165 9 0 chr9 3250486 3250710 -139020734 - L1PA15 LINE L1 -13 6152 5927 2582 130 16 3 chr9 3251072 3251450 -139019994 + MLT1B LTR MaLR 4 386 -4 230 300 0 0 chr9 3252024 3252084 -139019360 + (TG)n Simple_repeat Simple_repeat 2 61 0 245 378 90 27 chr9 3253106 3253294 -139018150 + MLT1K LTR MaLR 126 325 -263 478 241 24 60 chr9 3253550 3253716 -139017728 + LTR45 LTR ERV1 366 525 0 412 319 8 0 chr9 3254386 3254505 -139016939 + L2 LINE L2 3187 3306 -7 259 292 177 0 chr9 3254567 3254663 -139016781 - L2 LINE L2 0 3313 3201 663 215 115 68 chr9 3254684 3254875 -139016569 - MER20 DNA MER1_type -19 200 1 1410 291 76 10 chr9 3254877 3255571 -139015873 - L2 LINE L2 -119 3194 2458 423 292 146 0 chr9 3255575 3255712 -139015732 - MIR SINE MIR -104 158 2 1871 253 144 16 chr9 3255840 3256751 -139014693 + Charlie7 DNA MER1_type 436 1462 -1150 7676 185 83 22 chr9 3256755 3258064 -139013380 + L1M4c LINE L1 19 1246 -5138 1358 183 147 0 chr9 3258064 3258316 -139013128 - AluJb SINE Alu -13 289 1 7676 185 83 22 chr9 3258316 3258350 -139013094 + L1M4c LINE L1 1246 1276 -5108 2078 138 0 0 chr9 3258350 3258679 -139012765 + AluSx SINE Alu 4 312 0 7676 185 83 22 chr9 3258679 3259130 -139012314 + L1M4c LINE L1 1276 1924 -4460 2044 152 0 0 chr9 3259132 3259434 -139012010 - AluSx SINE Alu -10 302 1 572 185 8 0 chr9 3259515 3259634 -139011810 - L1MA9 LINE L1 -4 6308 6189 225 206 0 32 chr9 3259636 3259699 -139011745 + L1M4c LINE L1 2041 2101 -4283 * 1539 236 29 28 chr9 3259688 3260340 -139011104 + L1M4c LINE L1 2835 3487 -2895 501 134 0 0 chr9 3260359 3260441 -139011003 + L1MB3 LINE L1 1386 1467 -4917 317 146 0 0 chr9 3260443 3260491 -139010953 - Alu SINE Alu -15 287 240 2056 147 55 30 chr9 3260503 3261007 -139010437 - MLT2A2 LTR ERVL -22 532 2 3503 219 39 28 chr9 3261010 3262046 -139009398 + L1MB3 LINE L1 3481 4527 -1855 1934 153 88 5 chr9 3262045 3262430 -139009014 + L1MB3 LINE L1 5561 5977 -442 * 893 189 91 103 chr9 3262430 3262788 -139008656 + MLT1A1 LTR MaLR 1 428 -4 2301 161 33 5 chr9 3262788 3263218 -139008226 + L1MB3 LINE L1 5969 6410 -9 2112 234 90 17 chr9 3263229 3263997 -139007447 + Charlie7 DNA MER1_type 1462 2285 -327 294 253 49 31 chr9 3264201 3264220 -139007224 - L1MA10 LINE L1 0 6334 6316 2212 202 102 40 chr9 3264220 3264894 -139006550 - L1ME2 LINE L1 -11 6153 5438 21 0 0 0 chr9 3265138 3265159 -139006285 + AT_rich Low_complexity Low_complexity 1 21 0 2779 185 42 24 chr9 3266163 3266790 -139004654 + LTR9B LTR ERV1 7 644 0 722 206 101 42 chr9 3267204 3267599 -139003845 - MLT1A1 LTR MaLR 0 365 24 219 269 164 0 chr9 3267622 3267689 -139003755 + MIR SINE MIR 76 153 -55 642 198 161 0 chr9 3267940 3268102 -139003342 + MER5A DNA MER1_type 2 189 0 625 285 34 34 chr9 3268570 3268698 -139002746 - MIR SINE MIR -34 228 98 2252 186 83 2 chr9 3268698 3269165 -139002279 + MLT1D LTR MaLR 1 505 0 625 285 34 34 chr9 3269165 3269243 -139002201 - MIR SINE MIR -163 99 22 919 298 75 11 chr9 3270767 3271139 -139000305 + LTR16A LTR ERVL 55 450 0 871 190 34 34 chr9 3271326 3271450 -138999994 + MER3 DNA MER1_type 5 131 -78 1790 177 23 7 chr9 3271450 3271619 -138999825 - AluSx SINE Alu -2 310 132 1689 139 4 4 chr9 3271619 3271864 -138999580 - AluSx SINE Alu -15 297 53 1790 177 23 7 chr9 3271864 3271999 -138999445 - AluSx SINE Alu -180 132 1 871 190 34 34 chr9 3271999 3272079 -138999365 + MER3 DNA MER1_type 130 209 0 809 111 0 0 chr9 3273630 3273738 -138997706 + AluSg/x SINE Alu 175 282 -30 345 216 0 0 chr9 3273946 3274020 -138997424 + L1MC4 LINE L1 7785 7858 -184 427 324 0 16 chr9 3274081 3274263 -138997181 + (TA)n Simple_repeat Simple_repeat 1 179 0 235 247 0 0 chr9 3274317 3274390 -138997054 + L1MC4 LINE L1 7925 7997 -45 424 211 0 21 chr9 3274390 3274485 -138996959 - FAM SINE Alu -5 180 88 1228 278 75 20 chr9 3275031 3275745 -138995699 + L1ME3A LINE L1 5183 5934 -236 21 0 0 0 chr9 3276816 3276837 -138994607 + AT_rich Low_complexity Low_complexity 1 21 0 2090 148 33 25 chr9 3276912 3277271 -138994173 - THE1B LTR MaLR -2 362 1 2402 66 0 38 chr9 3277383 3277700 -138993744 + AluY SINE Alu 1 305 -6 380 312 102 16 chr9 3277942 3278128 -138993316 + MIR SINE MIR 61 262 0 242 389 18 42 chr9 3278667 3278834 -138992610 - MIR SINE MIR -79 183 21 225 0 0 0 chr9 3279012 3279037 -138992407 + (TG)n Simple_repeat Simple_repeat 1 25 0 328 268 120 11 chr9 3280524 3280671 -138990773 - MIR SINE MIR -33 175 19 546 239 103 0 chr9 3281133 3281288 -138990156 + MLT1J2 LTR MaLR 280 450 0 300 339 112 52 chr9 3281306 3281592 -138989852 + L2 LINE L2 2967 3269 -3 263 247 108 32 chr9 3281957 3282050 -138989394 + L2 LINE L2 2874 2973 -341 1160 292 78 19 chr9 3282108 3282551 -138988893 + LTR33 LTR ERVL 1 477 -44 2744 106 39 14 chr9 3282551 3282929 -138988515 + MLT2A1 LTR ERVL 1 393 -51 308 102 0 17 chr9 3282929 3282988 -138988456 + (TAGA)n Simple_repeat Simple_repeat 1 58 0 2744 106 39 14 chr9 3282988 3283042 -138988402 + MLT2A1 LTR ERVL 393 444 0 1160 292 78 19 chr9 3283042 3283085 -138988359 + LTR33 LTR ERVL 477 516 -5 2509 0 0 0 chr9 3283200 3283468 -138987976 - AluYa5 SINE Alu -6 305 38 323 351 46 23 chr9 3283682 3283813 -138987631 + L2 LINE L2 3134 3267 -5 1821 163 15 18 chr9 3284463 3284800 -138986644 + MER2 DNA MER2_type 1 336 -9 277 303 125 20 chr9 3284824 3284976 -138986468 - MIR SINE MIR -5 257 90 3305 45 0 0 chr9 3285029 3285430 -138986014 - L1PA4 LINE L1 -3 6152 5752 225 262 131 0 chr9 3286405 3286466 -138984978 - L2 LINE L2 -19 3294 3226 520 260 172 21 chr9 3287041 3287326 -138984118 + MLT1L LTR MaLR 38 365 -250 272 383 104 0 chr9 3287460 3287661 -138983783 - L2 LINE L2 -663 2651 2430 252 59 0 0 chr9 3287776 3287810 -138983634 + (CTG)n Simple_repeat Simple_repeat 2 35 0 295 353 24 50 chr9 3287995 3288335 -138983109 + LTR16C LTR ERVL 159 489 -2 967 194 122 56 chr9 3288569 3288889 -138982555 - MER2 DNA MER2_type 0 344 4 1066 261 12 4 chr9 3289339 3289674 -138981770 + MLT1I LTR MaLR 13 388 -21 1868 199 39 18 chr9 3290345 3290787 -138980657 + MLT1C LTR MaLR 11 461 -6 27 0 0 0 chr9 3290815 3290842 -138980602 + AT_rich Low_complexity Low_complexity 1 27 0 324 333 33 13 chr9 3290972 3291125 -138980319 + MIR SINE MIR 23 178 -84 396 151 0 0 chr9 3291133 3291206 -138980238 + LTR67 LTR ERVL 2 74 -483 495 299 139 43 chr9 3291261 3291635 -138979809 + LTR67 LTR ERVL 148 557 0 314 268 6 159 chr9 3292610 3292841 -138978603 - MIR SINE MIR -3 205 9 790 328 16 4 chr9 3292967 3293214 -138978230 + MIR SINE MIR 13 262 0 367 228 0 13 chr9 3294061 3294140 -138977304 - MIR3 SINE MIR -6 202 125 522 46 0 0 chr9 3294772 3294837 -138976607 + (TC)n Simple_repeat Simple_repeat 1 65 0 264 256 0 0 chr9 3294847 3294925 -138976519 + L1ME LINE L1 58 135 -5935 2772 94 5 0 chr9 3294933 3295306 -138976138 - THE1C LTR MaLR 0 375 1 253 338 0 0 chr9 3295508 3295579 -138975865 + C-rich Low_complexity Low_complexity 1 71 0 927 251 7 10 chr9 3295916 3296386 -138975058 + L1ME LINE L1 364 940 -5143 879 287 75 41 chr9 3296591 3297083 -138974361 - MLT1H LTR MaLR -40 509 1 282 307 0 13 chr9 3297156 3297231 -138974213 - MIR SINE MIR -85 123 50 2464 182 22 55 chr9 3297543 3298121 -138973323 - L1MB5 LINE L1 -10 6164 5606 234 388 10 0 chr9 3298404 3298507 -138972937 - MIR SINE MIR -67 141 38 813 159 28 14 chr9 3298626 3298771 -138972673 + FRAM SINE Alu 19 165 -11 614 251 94 30 chr9 3298993 3299196 -138972248 - MIR SINE MIR -2 260 45 327 157 0 0 chr9 3299189 3299240 -138972204 - MER5A DNA MER1_type -138 51 1 * 216 250 29 0 chr9 3299808 3299876 -138971568 + (TA)n Simple_repeat Simple_repeat 2 71 0 414 305 11 29 chr9 3300573 3300747 -138970697 + MER5B DNA MER1_type 2 172 -6 1403 202 112 30 chr9 3300871 3301157 -138970287 - MSTD LTR MaLR 0 396 72 2141 131 3 7 chr9 3301157 3301462 -138969982 - AluSq SINE Alu -9 304 1 1403 202 112 30 chr9 3301462 3301541 -138969903 - MSTD LTR MaLR -324 72 1 316 298 106 13 chr9 3302244 3302395 -138969049 - L1ME4a LINE L1 -202 5919 5755 239 294 228 0 chr9 3302399 3302491 -138968953 + MER5A DNA MER1_type 69 181 -8 2277 123 0 3 chr9 3302647 3302955 -138968489 - AluSx SINE Alu -5 307 1 261 222 193 19 chr9 3303002 3303209 -138968235 - L1ME4a LINE L1 -36 6085 5843 202 373 27 0 chr9 3303244 3303319 -138968125 - L3 LINE CR1 -1043 534 458 353 404 13 30 chr9 3303390 3303620 -138967824 - L3 LINE CR1 -1309 268 43 613 317 69 29 chr9 3303644 3303991 -138967453 - MARNA DNA Mariner -201 385 25 1462 219 38 27 chr9 3303999 3304365 -138967079 - MLT1A2 LTR MaLR -4 370 1 216 0 0 0 chr9 3304556 3304580 -138966864 + (TTTTTG)n Simple_repeat Simple_repeat 2 25 0 23 0 0 0 chr9 3304672 3304695 -138966749 + AT_rich Low_complexity Low_complexity 1 23 0 195 42 0 0 chr9 3304907 3304931 -138966513 + (T)n Simple_repeat Simple_repeat 1 24 0 1924 68 0 16 chr9 3306078 3306326 -138965118 - AluY SINE Alu -5 306 63 259 331 58 32 chr9 3306461 3306615 -138964829 + L2 LINE L2 3149 3306 -7 549 203 25 20 chr9 3306645 3306893 -138964551 + CT-rich Low_complexity Low_complexity 1 249 0 573 315 91 4 chr9 3308460 3308701 -138962743 - MLT1K LTR MaLR -172 416 155 434 292 8 8 chr9 3309271 3309401 -138962043 - MER94 DNA DNA -3 131 2 23 68 0 0 chr9 3309717 3309761 -138961683 + AT_rich Low_complexity Low_complexity 1 44 0 413 270 50 87 chr9 3310918 3311159 -138960285 + MER102b DNA MER1_type 103 334 -7 294 125 0 0 chr9 3312392 3312440 -138959004 + (TGGA)n Simple_repeat Simple_repeat 3 50 0 182 150 25 0 chr9 3313446 3313486 -138957958 + (CA)n Simple_repeat Simple_repeat 2 42 0 203 292 21 31 chr9 3313598 3313694 -138957750 + (CATA)n Simple_repeat Simple_repeat 4 98 0 217 218 109 0 chr9 3314000 3314055 -138957389 - L2 LINE L2 -15 3257 3197 224 30 30 0 chr9 3314111 3314144 -138957300 + (GA)n Simple_repeat Simple_repeat 1 34 0 188 304 0 36 chr9 3314641 3314697 -138956747 + L2 LINE L2 3148 3201 -71 1779 156 3 33 chr9 3314783 3315084 -138956360 - AluJb SINE Alu -20 292 1 1886 176 76 23 chr9 3315113 3315644 -138955800 - MLT2A2 LTR ERVL 0 554 1 202 233 0 0 chr9 3315649 3315692 -138955752 + MIR SINE MIR 196 238 -24 237 65 0 0 chr9 3315733 3315764 -138955680 + (TCC)n Simple_repeat Simple_repeat 3 33 0 321 343 56 0 chr9 3315838 3315946 -138955498 + MER91C DNA MER1_type 1 114 -26 868 107 0 0 chr9 3317410 3317532 -138953912 - FRAM SINE Alu -1 175 54 351 320 109 6 chr9 3317540 3317715 -138953729 - MIR SINE MIR -62 200 8 1769 184 27 15 chr9 3317730 3318067 -138953377 + MER58B DNA MER1_type 1 341 0 298 378 6 47 chr9 3318945 3319117 -138952327 + MIR3 SINE MIR 1 145 -63 594 251 118 102 chr9 3319171 3319673 -138951771 - MLT1J LTR MaLR 0 511 2 1056 224 29 22 chr9 3319982 3320295 -138951149 + MER33 DNA MER1_type 1 315 -9 219 311 68 0 chr9 3320296 3320370 -138951074 + L2 LINE L2 3192 3270 -43 434 365 36 12 chr9 3320541 3320793 -138950651 + MIR SINE MIR 5 262 0 984 273 90 19 chr9 3321126 3321504 -138949940 - MLT1I LTR MaLR -3 406 2 456 266 87 100 chr9 3321689 3322219 -138949225 + L1ME4a LINE L1 5485 6007 -114 181 240 40 0 chr9 3322384 3322434 -138949010 + L2 LINE L2 3261 3312 -1 512 176 84 59 chr9 3322981 3323100 -138948344 + MER91B DNA MER1_type 1 122 -68 310 245 20 69 chr9 3323124 3323226 -138948218 + MER91B DNA MER1_type 93 189 -1 216 272 0 99 chr9 3323708 3323789 -138947655 + L2 LINE L2 3239 3311 -2 1060 168 10 15 chr9 3323819 3324021 -138947423 + MER41B LTR ERV1 349 549 -86 357 263 36 15 chr9 3324104 3324241 -138947203 - L1MC/D LINE L1 -2043 5765 5626 414 100 0 0 chr9 3324249 3324309 -138947135 + (TA)n Simple_repeat Simple_repeat 2 61 0 23 33 0 0 chr9 3324309 3324339 -138947105 + AT_rich Low_complexity Low_complexity 1 30 0 1909 139 4 4 chr9 3324342 3324622 -138946822 + AluSx SINE Alu 1 280 -32 336 111 0 0 chr9 3324622 3324685 -138946759 + (TCTG)n Simple_repeat Simple_repeat 2 64 0 21 36 0 0 chr9 3324685 3324713 -138946731 + AT_rich Low_complexity Low_complexity 1 28 0 376 106 106 0 chr9 3324755 3324916 -138946528 + (TA)n Simple_repeat Simple_repeat 1 178 0 29 60 0 0 chr9 3324916 3324966 -138946478 + AT_rich Low_complexity Low_complexity 1 50 0 368 96 117 0 chr9 3324968 3325525 -138945919 + (TA)n Simple_repeat Simple_repeat 1 622 0 734 202 12 40 chr9 3325526 3325699 -138945745 - AluJo SINE Alu -144 168 1 294 151 0 0 chr9 3326264 3326317 -138945127 - L1MC5 LINE L1 -185 7776 7724 2019 244 61 23 chr9 3326599 3327338 -138944106 + L1M4 LINE L1 2505 3271 -2875 2028 221 94 52 chr9 3327368 3328142 -138943302 + L1M4 LINE L1 3565 4371 -1775 * 2326 234 41 53 chr9 3328121 3328952 -138942492 + L1MC4 LINE L1 7215 8035 -7 389 220 28 28 chr9 3329185 3329294 -138942150 + MIR SINE MIR 84 192 -70 919 303 149 9 chr9 3329345 3329880 -138941564 + L2 LINE L2 2713 3313 0 27 49 0 0 chr9 3329962 3330003 -138941441 + AT_rich Low_complexity Low_complexity 1 41 0 1956 134 4 0 chr9 3330010 3330285 -138941159 + AluSx SINE Alu 1 276 -36 23 0 0 0 chr9 3330340 3330363 -138941081 + AT_rich Low_complexity Low_complexity 1 23 0 1678 253 31 13 chr9 3331721 3332171 -138939273 + LTR40c LTR ERVL 1 458 -7 625 338 30 72 chr9 3332644 3333380 -138938064 + L1ME2 LINE L1 110 814 -5582 * 1867 264 49 3 chr9 3333366 3334105 -138937339 + L1ME2 LINE L1 2888 3660 -2555 548 284 34 0 chr9 3334140 3334344 -138937100 + L1ME2 LINE L1 3959 4169 -2046 1409 239 164 13 chr9 3334373 3335072 -138936372 + L1ME2 LINE L1 4605 5409 -806 2280 200 91 35 chr9 3335074 3335704 -138935740 + L1ME2 LINE L1 5444 6108 -125 277 403 8 0 chr9 3336016 3336145 -138935299 + MER89-int LTR ERV1 6334 6463 -338 10352 25 19 2 chr9 3336479 3338466 -138932978 + L1PA4 LINE L1 4170 6155 0 207 0 0 0 chr9 3338818 3338841 -138932603 + (A)n Simple_repeat Simple_repeat 1 23 0 317 181 97 42 chr9 3339248 3339320 -138932124 - MIR SINE MIR -142 120 45 1833 199 50 13 chr9 3339321 3339703 -138931741 - MER57A LTR ERV1 0 403 8 218 260 87 39 chr9 3339897 3340001 -138931443 + MIR SINE MIR 98 206 -56 2374 95 0 7 chr9 3340066 3340371 -138931073 - AluSp SINE Alu -10 303 1 192 182 250 0 chr9 3341028 3341072 -138930372 + L2 LINE L2 3217 3271 -1 25 51 0 0 chr9 3341361 3341400 -138930044 + AT_rich Low_complexity Low_complexity 1 39 0 1573 166 76 3 chr9 3341531 3341821 -138929623 + AluJb SINE Alu 1 311 -1 23 86 0 0 chr9 3341886 3341944 -138929500 + AT_rich Low_complexity Low_complexity 1 58 0 230 310 99 0 chr9 3341944 3342086 -138929358 + L1ME4a LINE L1 5482 5637 -484 2161 106 6 13 chr9 3342310 3342622 -138928822 + AluSx SINE Alu 1 310 -2 1788 68 8 0 chr9 3342638 3342875 -138928569 + L1PA7 LINE L1 5916 6154 0 393 236 55 0 chr9 3342884 3343011 -138928433 + L1ME4a LINE L1 5988 6121 0 1277 165 11 56 chr9 3343180 3343446 -138927998 - AluJb SINE Alu -58 254 1 1565 239 45 19 chr9 3345247 3345709 -138925735 + MLT1E2 LTR MaLR 156 626 0 1536 266 55 82 chr9 3345721 3346713 -138924731 + HAL1 LINE L1 739 1704 -803 583 283 97 39 chr9 3346910 3347221 -138924223 + HAL1 LINE L1 2168 2496 -11 631 298 50 17 chr9 3347237 3347475 -138923969 - MIR SINE MIR 0 262 17 1557 192 76 21 chr9 3347888 3348269 -138923175 + LTR52 LTR ERVL 18 419 -2 260 257 76 29 chr9 3348708 3348813 -138922631 - MIR SINE MIR -94 168 59 344 259 108 76 chr9 3349159 3349344 -138922100 - MIR3 SINE MIR -10 198 8 4841 197 23 34 chr9 3349511 3350790 -138920654 - L1MD2 LINE L1 -24 6335 5074 28 0 0 0 chr9 3351698 3351726 -138919718 + AT_rich Low_complexity Low_complexity 1 28 0 424 109 0 0 chr9 3351726 3351781 -138919663 + LOR1-int LTR ERV1 3813 3867 -4253 1308 134 0 0 chr9 3351808 3352017 -138919427 - L1MA2 LINE L1 -4 6300 6092 325 347 172 24 chr9 3352956 3353247 -138918197 - L2 LINE L2 -7 3265 2932 276 287 43 17 chr9 3353479 3353594 -138917850 - MIR SINE MIR -43 219 102 210 37 0 0 chr9 3353678 3353705 -138917739 + (TAAAAA)n Simple_repeat Simple_repeat 4 30 0 337 340 51 9 chr9 3354161 3354376 -138917068 + L1P LINE L1 3509 3732 -2414 201 412 0 8 chr9 3354379 3354498 -138916946 + MIR SINE MIR 41 158 -104 779 216 59 54 chr9 3354560 3354727 -138916717 - MIR SINE MIR -23 239 69 1818 189 55 3 chr9 3354727 3355070 -138916374 + MLT1A1 LTR MaLR 1 361 -4 779 216 59 54 chr9 3355070 3355124 -138916320 - MIR SINE MIR -193 69 17 326 298 127 72 chr9 3355151 3355464 -138915980 + L1ME LINE L1 3862 4156 -1990 2136 174 61 2 chr9 3355464 3355872 -138915572 - MSTB1 LTR MaLR 0 432 1 326 298 127 72 chr9 3355872 3356173 -138915271 + L1ME LINE L1 4156 4510 -1636 21 36 0 0 chr9 3356496 3356524 -138914920 + AT_rich Low_complexity Low_complexity 1 28 0 574 279 60 60 chr9 3356538 3356853 -138914591 + MLT1J LTR MaLR 197 511 0 5092 73 16 0 chr9 3357226 3357913 -138913531 - L1PA10 LINE L1 -186 5982 5285 490 304 68 34 chr9 3357931 3358257 -138913187 + L1ME LINE L1 5484 5820 -301 3278 146 8 42 chr9 3358738 3359354 -138912090 + L1MA10 LINE L1 5740 6334 0 208 311 39 0 chr9 3360058 3360161 -138911283 + L2 LINE L2 2549 2655 -659 303 339 99 9 chr9 3360219 3360440 -138911004 + MIR SINE MIR 6 246 -16 246 207 37 37 chr9 3360524 3360606 -138910838 - MER103 DNA DNA -82 84 3 1788 188 28 6 chr9 3361226 3361583 -138909861 - MLT1A1 LTR MaLR 0 365 1 24 0 0 0 chr9 3361594 3361618 -138909826 + AT_rich Low_complexity Low_complexity 1 24 0 548 326 82 10 chr9 3362228 3362424 -138909020 - MIR SINE MIR -33 229 20 186 327 140 47 chr9 3362497 3362604 -138908840 - L2 LINE L2 -17 3255 3139 1258 113 21 0 chr9 3363282 3363476 -138907968 - L1PB3 LINE L1 0 6154 5957 2869 9 0 0 chr9 3363860 3364175 -138907269 + AluYb8 SINE Alu 1 315 -3 426 253 7 20 chr9 3364187 3364333 -138907111 - L1MC4a LINE L1 -1913 5895 5752 433 280 19 32 chr9 3364406 3364684 -138906760 - L1MEd LINE L1 -4862 1257 1069 455 297 57 29 chr9 3364779 3365025 -138906419 + L1MEd LINE L1 971 1223 -4896 2201 114 0 7 chr9 3365353 3365659 -138905785 - AluSx SINE Alu -8 304 1 397 333 56 12 chr9 3365689 3365851 -138905593 - MIR3 SINE MIR -4 204 36 414 183 65 11 chr9 3366468 3366561 -138904883 + MER5A DNA MER1_type 9 106 -83 796 327 28 6 chr9 3367900 3368261 -138903183 + L1ME LINE L1 5452 5820 -301 1480 148 60 27 chr9 3369064 3369396 -138902048 - L1MA8 LINE L1 0 6291 5949 511 118 0 24 chr9 3370390 3370475 -138900969 - AluSc SINE Alu -226 83 1 3281 164 11 9 chr9 3370476 3371000 -138900444 + HUERS-P3 LTR ERV1 6198 6722 -2197 13005 119 27 45 chr9 3371000 3372169 -138899275 + HUERS-P3 LTR ERV1 6863 8051 -868 209 271 0 68 chr9 3372169 3372228 -138899216 + MER5A DNA MER1_type 1 55 -134 13005 119 27 45 chr9 3372228 3372245 -138899199 + HUERS-P3 LTR ERV1 8051 8067 -852 2225 114 0 7 chr9 3372245 3372553 -138898891 - AluSg SINE Alu -4 306 1 13005 119 27 45 chr9 3372553 3373401 -138898043 + HUERS-P3 LTR ERV1 8067 8919 0 2580 186 19 68 chr9 3373401 3374045 -138897399 + LTR9 LTR ERV1 1 612 0 1835 214 53 22 chr9 3374045 3374862 -138896582 - L1MC4a LINE L1 -477 5707 4917 252 0 0 0 chr9 3374862 3374890 -138896554 + (TTTG)n Simple_repeat Simple_repeat 1 28 0 1835 214 53 22 chr9 3374890 3375550 -138895894 - L1MC4a LINE L1 -1267 4917 4020 198 182 0 23 chr9 3375561 3375605 -138895839 - L2 LINE L2 -637 2677 2635 2029 125 3 28 chr9 3376150 3376471 -138894973 - AluSq SINE Alu 0 313 1 335 307 92 33 chr9 3376653 3376806 -138894638 + L2 LINE L2 2988 3149 -164 22 0 0 0 chr9 3376992 3377014 -138894430 + AT_rich Low_complexity Low_complexity 1 22 0 6203 132 52 9 chr9 3377518 3378599 -138892845 + L1MC1 LINE L1 5188 6317 -16 2542 75 80 3 chr9 3378627 3379002 -138892442 - L1PA13 LINE L1 -5 6158 5755 2599 89 3 3 chr9 3379003 3379361 -138892083 - L1PA12 LINE L1 -329 5839 5482 2388 4 0 0 chr9 3381329 3381584 -138889860 + AluYa5 SINE Alu 39 293 -18 204 381 16 8 chr9 3382006 3382132 -138889312 + L2 LINE L2 2629 2755 -559 526 274 91 43 chr9 3382211 3382407 -138889037 + MIR SINE MIR 20 225 -37 209 194 0 0 chr9 3382877 3382913 -138888531 + (TGAA)n Simple_repeat Simple_repeat 4 39 0 186 133 0 0 chr9 3383634 3383664 -138887780 + (GAAA)n Simple_repeat Simple_repeat 1 30 0 1099 256 62 6 chr9 3384089 3384451 -138886993 - L1ME LINE L1 -552 5618 5237 826 333 89 24 chr9 3384563 3384935 -138886509 + LTR16C LTR ERVL 90 485 -6 242 270 79 0 chr9 3385782 3385871 -138885573 + L2 LINE L2 3218 3313 0 1858 155 0 7 chr9 3386012 3386309 -138885135 - AluJb SINE Alu -17 295 1 276 333 0 0 chr9 3386506 3386593 -138884851 - L2 LINE L2 -4 3268 3182 257 303 40 30 chr9 3386737 3386836 -138884608 - L2 LINE L2 -11 3302 3203 501 248 272 5 chr9 3386920 3387122 -138884322 + MIR SINE MIR 7 262 0 1535 271 126 46 chr9 3387726 3389649 -138881795 + L1ME2 LINE L1 187 1954 -4126 297 51 0 0 chr9 3389649 3389688 -138881756 + (CA)n Simple_repeat Simple_repeat 2 40 0 * 684 67 0 0 chr9 3389687 3389777 -138881667 + (TA)n Simple_repeat Simple_repeat 2 91 0 1535 271 126 46 chr9 3389688 3390268 -138881176 + L1ME2 LINE L1 1954 2790 -3290 1784 242 55 32 chr9 3390279 3390931 -138880513 + L1ME2 LINE L1 3317 3983 -2097 426 215 56 21 chr9 3390926 3391070 -138880374 + L1ME2 LINE L1 5124 5272 -808 * 2223 98 0 0 chr9 3391117 3391403 -138880041 + AluSp SINE Alu 4 289 -24 21 0 0 0 chr9 3391405 3391426 -138880018 + AT_rich Low_complexity Low_complexity 1 21 0 2127 91 30 14 chr9 3391448 3391745 -138879699 + AluSc SINE Alu 6 307 -2 1779 257 25 17 chr9 3391748 3392278 -138879166 + L1ME2 LINE L1 5302 5835 -263 460 35 0 0 chr9 3392270 3392327 -138879117 - L1P LINE L1 -5916 230 174 * 36900 54 1 2 chr9 3392331 3395717 -138875727 + L1PA5 LINE L1 674 4060 -2094 7618 39 1 1 chr9 3395717 3396614 -138874830 - MER11D LTR ERVK 0 897 1 36900 54 1 2 chr9 3396614 3398693 -138872751 + L1PA5 LINE L1 4060 6138 -16 583 268 86 8 chr9 3398741 3398984 -138872460 + L1ME2 LINE L1 5813 6074 -24 12453 204 41 13 chr9 3400419 3400459 -138870985 - L1MB1 LINE L1 -209 6195 6158 624 193 0 0 chr9 3400459 3400594 -138870850 - L1MB1 LINE L1 -1 6167 6033 12453 204 41 13 chr9 3400594 3404440 -138867004 - L1MB1 LINE L1 -246 6158 2190 197 284 116 0 chr9 3405091 3405180 -138866264 + MIR SINE MIR 52 148 -62 21 36 0 0 chr9 3406188 3406216 -138865228 + AT_rich Low_complexity Low_complexity 1 28 0 2710 61 3 0 chr9 3406259 3406603 -138864841 - L1PA7 LINE L1 0 6154 5810 1932 58 0 0 chr9 3406603 3406845 -138864599 + L1PA7 LINE L1 5572 5813 -341 336 306 27 20 chr9 3408144 3408291 -138863153 + L1ME4a LINE L1 5965 6112 -9 185 0 0 39 chr9 3408618 3408644 -138862800 + (TTA)n Simple_repeat Simple_repeat 3 27 0 517 324 117 28 chr9 3408990 3409450 -138861994 - L1M4 LINE L1 -1586 4560 4060 23 54 0 0 chr9 3410114 3410151 -138861293 + AT_rich Low_complexity Low_complexity 1 37 0 340 238 105 70 chr9 3411089 3411158 -138860286 + MIR SINE MIR 76 141 -121 339 25 0 0 chr9 3411158 3411198 -138860246 + (ATG)n Simple_repeat Simple_repeat 3 42 0 340 238 105 70 chr9 3411198 3411271 -138860173 + MIR SINE MIR 141 223 -39 284 315 15 54 chr9 3412183 3412313 -138859131 - MIR3 SINE MIR -11 197 73 503 130 0 0 chr9 3412448 3412525 -138858919 - MADE1 DNA Mariner -3 77 1 561 282 17 35 chr9 3413453 3413627 -138857817 - MER20B DNA MER1_type -609 174 4 621 293 25 20 chr9 3414445 3414643 -138856801 - MIR SINE MIR -56 206 8 219 262 33 16 chr9 3414775 3414836 -138856608 - MIR SINE MIR -115 147 86 29 0 0 0 chr9 3414917 3414946 -138856498 + AT_rich Low_complexity Low_complexity 1 29 0 180 0 0 0 chr9 3415116 3415136 -138856308 + (TTTA)n Simple_repeat Simple_repeat 2 21 0 345 140 0 0 chr9 3416286 3416343 -138855101 + (CA)n Simple_repeat Simple_repeat 2 58 0 716 239 177 5 chr9 3416377 3416586 -138854858 - MIR SINE MIR 0 262 18 337 300 134 89 chr9 3416583 3417052 -138854392 + L2 LINE L2 2770 3255 -17 * 336 281 22 11 chr9 3418306 3418395 -138853049 + MER91A DNA MER1_type 2 91 -105 2102 177 28 23 chr9 3419095 3420680 -138850764 + L1MC3 LINE L1 4731 7765 -20 1957 119 0 41 chr9 3420680 3421001 -138850443 - AluSx SINE Alu 0 309 1 2102 177 28 23 chr9 3421001 3421023 -138850421 + L1MC3 LINE L1 7765 7785 0 525 267 99 15 chr9 3421225 3421487 -138849957 + HAL1 LINE L1 1398 1681 -826 35 0 0 0 chr9 3421637 3421672 -138849772 + AT_rich Low_complexity Low_complexity 1 35 0 1325 178 114 11 chr9 3423280 3423561 -138847883 + AluSx SINE Alu 2 311 -1 1003 289 16 9 chr9 3425017 3425339 -138846105 + L1MCc LINE L1 130 453 -5970 388 246 48 60 chr9 3425821 3425988 -138845456 + L1MCc LINE L1 795 959 -5464 1060 279 73 26 chr9 3426052 3426540 -138844904 + L1MCc LINE L1 1339 1803 -5319 2172 86 58 0 chr9 3426540 3426831 -138844613 + AluSg SINE Alu 1 308 -2 1060 279 73 26 chr9 3426831 3427287 -138844157 + L1MCc LINE L1 1803 2518 -4604 28895 102 13 3 chr9 3427337 3432470 -138838974 - L1PA7 LINE L1 0 6469 1288 4747 17 0 0 chr9 3432474 3433016 -138838428 - L1PA2 LINE L1 0 6155 5614 4669 34 2 0 chr9 3433016 3433583 -138837861 + L1P LINE L1 4686 5253 -893 * 9008 98 32 5 chr9 3433576 3434840 -138836604 - L1PA7 LINE L1 -5161 1300 2 1819 169 0 19 chr9 3435022 3435330 -138836114 - AluJo SINE Alu -10 302 1 2893 236 64 26 chr9 3435374 3436244 -138835200 + L1MEc LINE L1 40 942 -5454 701 318 32 53 chr9 3436279 3436657 -138834787 - MLT1L LTR MaLR -123 492 123 2533 239 28 11 chr9 3436756 3437299 -138834145 + REP3 LTR ERV 11 562 0 644 264 70 0 chr9 3437426 3437627 -138833817 + MER58C DNA MER1_type 1 215 0 231 361 139 0 chr9 3437697 3437805 -138833639 - MIR SINE MIR -112 150 28 252 59 0 0 chr9 3437976 3438010 -138833434 + (GAAAA)n Simple_repeat Simple_repeat 1 34 0 211 245 75 0 chr9 3438240 3438293 -138833151 - L2 LINE L2 -4 3268 3212 320 268 145 41 chr9 3438429 3438698 -138832746 - MER102a DNA MER1_type 0 330 34 729 117 0 83 chr9 3438838 3438983 -138832461 - L1MD1 LINE L1 -14 6228 6096 213 227 0 0 chr9 3439121 3439165 -138832279 + (TATATG)n Simple_repeat Simple_repeat 6 49 0 606 228 42 5 chr9 3439176 3439365 -138832079 - L1MD1 LINE L1 -1985 5823 5628 874 298 80 35 chr9 3439380 3440172 -138831272 - L1MD1 LINE L1 -748 5398 4686 183 80 0 0 chr9 3440172 3440197 -138831247 + (CCCCCA)n Simple_repeat Simple_repeat 4 28 0 874 298 80 35 chr9 3440197 3440589 -138830855 - L1MD1 LINE L1 -1460 4686 4313 3577 126 24 0 chr9 3440601 3441179 -138830265 - L1MA5A LINE L1 -3 6294 5703 1522 196 37 0 chr9 3441179 3441470 -138829974 + L1PB4 LINE L1 5837 6143 -13 2967 149 18 9 chr9 3441486 3442041 -138829403 - L1MA5A LINE L1 -587 5710 5144 4076 129 25 71 chr9 3442041 3442863 -138828581 - LTR1 LTR ERV1 0 785 1 2967 149 18 9 chr9 3442863 3443238 -138828206 - L1MA5A LINE L1 -1153 5144 4774 327 297 25 0 chr9 3443391 3443509 -138827935 - L1MD1 LINE L1 -1987 4159 4039 1785 189 88 43 chr9 3443931 3444226 -138827218 - Charlie4a DNA MER1_type -1453 508 183 3827 14 0 0 chr9 3444226 3444665 -138826779 + L1PA2 LINE L1 5717 6155 0 1785 189 88 43 chr9 3444665 3444835 -138826609 - Charlie4a DNA MER1_type -1778 183 22 1769 163 3 3 chr9 3446054 3446379 -138825065 - AluSx SINE Alu 0 325 1 1068 202 79 128 chr9 3446775 3446843 -138824601 - MLT1D LTR MaLR -1 504 434 2354 104 0 0 chr9 3446843 3447150 -138824294 + AluSg SINE Alu 3 309 -1 1068 202 79 128 chr9 3447150 3447611 -138823833 - MLT1D LTR MaLR -71 434 1 2977 278 109 28 chr9 3448533 3450647 -138820797 - L1MC4a LINE L1 -758 5388 3850 311 88 0 18 chr9 3450647 3450704 -138820740 + (TA)n Simple_repeat Simple_repeat 1 56 0 2977 278 109 28 chr9 3450704 3451553 -138819891 - L1MC4a LINE L1 -2296 3850 3071 399 21 0 0 chr9 3451777 3451825 -138819619 + (CA)n Simple_repeat Simple_repeat 2 49 0 267 293 75 43 chr9 3451891 3452079 -138819365 - HAL1b LINE L1 -929 419 226 26 30 0 0 chr9 3452202 3452235 -138819209 + AT_rich Low_complexity Low_complexity 1 33 0 216 67 0 0 chr9 3452719 3452749 -138818695 + (TTG)n Simple_repeat Simple_repeat 2 31 0 237 385 54 0 chr9 3455021 3455151 -138816293 + MIR3 SINE MIR 2 138 -70 194 276 163 0 chr9 3455413 3455511 -138815933 + MIR SINE MIR 8 121 -141 307 179 0 24 chr9 3455917 3456001 -138815443 + CT-rich Low_complexity Low_complexity 4 85 0 468 231 23 62 chr9 3456611 3456664 -138814780 + L2 LINE L2 3189 3242 -71 1378 250 82 52 chr9 3456664 3457188 -138814256 + MLT1F LTR MaLR 3 542 0 468 231 23 62 chr9 3457188 3457264 -138814180 + L2 LINE L2 3242 3313 0 23 0 0 0 chr9 3457827 3457850 -138813594 + AT_rich Low_complexity Low_complexity 1 23 0 243 266 78 101 chr9 3457866 3458084 -138813360 - L2 LINE L2 -174 3139 2927 345 24 0 0 chr9 3458162 3458204 -138813240 + (CA)n Simple_repeat Simple_repeat 1 42 0 224 228 0 0 chr9 3458372 3458429 -138813015 + T-rich Low_complexity Low_complexity 1 57 0 290 293 81 10 chr9 3458431 3458530 -138812914 - MIR SINE MIR -87 175 70 1123 176 27 5 chr9 3459486 3459708 -138811736 + L1MA9 LINE L1 6049 6275 -37 2128 99 3 11 chr9 3460023 3460334 -138811110 - AluSq SINE Alu 0 311 3 304 232 141 40 chr9 3460973 3461072 -138810372 + MER20B DNA MER1_type 70 178 -605 641 190 25 0 chr9 3461374 3461495 -138809949 - MLT2D LTR ERVL -274 140 17 882 220 70 0 chr9 3461522 3461722 -138809722 + MLT1H1 LTR MaLR 342 555 0 966 305 90 11 chr9 3461733 3462166 -138809278 + L2 LINE L2 2842 3308 -5 3258 151 36 31 chr9 3462817 3463372 -138808072 + MER74A LTR ERVL 1 558 0 304 281 12 0 chr9 3463496 3463578 -138807866 - L2 LINE L2 -4 3268 3186 1583 213 0 3 chr9 3463960 3464247 -138807197 + AluJo SINE Alu 1 286 -26 659 315 84 4 chr9 3464251 3464489 -138806955 - MIR SINE MIR 0 262 6 339 213 0 50 chr9 3465464 3465544 -138805900 - L2 LINE L2 -5 3308 3233 223 311 25 8 chr9 3466460 3466579 -138804865 + (CACG)n Simple_repeat Simple_repeat 1 121 0 425 193 211 18 chr9 3468282 3468396 -138803048 - MER82 DNA MER2_type -504 149 14 1140 244 136 40 chr9 3468923 3469373 -138802071 - MLT1D LTR MaLR 0 505 13 2245 109 0 10 chr9 3469669 3469981 -138801463 - AluY SINE Alu 0 311 3 249 146 0 0 chr9 3470048 3470096 -138801348 + (GA)n Simple_repeat Simple_repeat 1 48 0 509 254 204 33 chr9 3470127 3470402 -138801042 + Charlie2 DNA MER1_type 1 322 -2540 611 199 121 0 chr9 3470409 3470550 -138800894 + Charlie2 DNA MER1_type 1858 2015 -847 743 244 120 14 chr9 3470637 3471055 -138800389 + Charlie2 DNA MER1_type 2334 2795 -67 2244 116 6 30 chr9 3471082 3471443 -138800001 + MER50 LTR ERV1 1 352 -382 518 264 156 64 chr9 3471455 3471781 -138799663 - LTR18A LTR ERVL -1 356 1 1840 143 39 34 chr9 3471781 3472138 -138799306 + MER50 LTR ERV1 347 705 -29 749 233 25 6 chr9 3474094 3474253 -138797191 - MER5A DNA MER1_type -3 186 25 1450 172 31 151 chr9 3474383 3474808 -138796636 + MLT1A2 LTR MaLR 1 374 0 185 359 39 19 chr9 3475075 3475178 -138796266 + MIR SINE MIR 104 208 -54 321 301 141 47 chr9 3475185 3475441 -138796003 + L2 LINE L2 3032 3311 -2 2056 107 0 14 chr9 3475762 3476052 -138795392 + AluSc SINE Alu 1 286 -23 243 217 36 48 chr9 3476902 3476985 -138794459 + MIR SINE MIR 104 185 -77 240 231 19 0 chr9 3477719 3477771 -138793673 + (TATATG)n Simple_repeat Simple_repeat 5 57 0 253 298 118 8 chr9 3477776 3478003 -138793441 + L1MC4a LINE L1 5389 5640 -522 505 195 190 36 chr9 3478508 3478703 -138792741 + L1MC4a LINE L1 5674 5898 -1910 386 171 0 85 chr9 3478883 3478965 -138792479 - MER5B DNA MER1_type 0 178 104 249 290 176 51 chr9 3479174 3479350 -138792094 - MIR SINE MIR -45 217 20 337 261 76 8 chr9 3480288 3480407 -138791037 - L1ME4a LINE L1 -53 6068 5942 2585 36 3 7 chr9 3480412 3480717 -138790727 + AluY SINE Alu 1 304 -7 181 292 77 15 chr9 3481087 3481152 -138790292 - L3 LINE CR1 -1297 280 212 756 278 106 16 chr9 3481479 3481799 -138789645 - L2 LINE L2 -7 3306 2958 1504 215 7 7 chr9 3482024 3482312 -138789132 + AluJo SINE Alu 3 290 -22 264 30 0 0 chr9 3482485 3482518 -138788926 + (TG)n Simple_repeat Simple_repeat 2 34 0 715 236 0 8 chr9 3482717 3482844 -138788600 + FLAM_A SINE Alu 3 128 -5 2264 134 85 15 chr9 3484550 3485104 -138786340 - MER39 LTR ERV1 0 707 32 398 284 113 0 chr9 3485150 3485291 -138786153 - MIR SINE MIR -48 214 58 286 214 14 14 chr9 3485602 3485672 -138785772 + MIR SINE MIR 129 198 -64 544 276 46 46 chr9 3486971 3487014 -138784430 - MIR SINE MIR -64 198 156 1541 171 100 10 chr9 3487014 3487324 -138784120 - MER44D DNA MER2_type 0 609 2 544 276 46 46 chr9 3487324 3487476 -138783968 - MIR SINE MIR -105 157 3 211 182 0 0 chr9 3487524 3487557 -138783887 + polypurine Low_complexity Low_complexity 4 36 0 242 262 56 19 chr9 3487926 3488033 -138783411 + L1ME LINE L1 5314 5424 -2384 1301 211 57 82 chr9 3488037 3488285 -138783159 - MLT1C LTR MaLR -5 462 230 378 0 0 0 chr9 3488285 3488327 -138783117 + (TG)n Simple_repeat Simple_repeat 2 43 0 1301 211 57 82 chr9 3488327 3488552 -138782892 - MLT1C LTR MaLR -237 230 1 2313 118 0 0 chr9 3488825 3489130 -138782314 + AluSq SINE Alu 1 305 -8 21 0 0 0 chr9 3489320 3489341 -138782103 + AT_rich Low_complexity Low_complexity 1 21 0 1942 167 139 54 chr9 3489633 3489861 -138781583 + MER39 LTR ERV1 4 211 -496 2281 169 39 10 chr9 3489861 3490246 -138781198 + MSTD LTR MaLR 1 396 0 1942 167 139 54 chr9 3490246 3490633 -138780811 + MER39 LTR ERV1 211 707 0 829 288 99 20 chr9 3491799 3492153 -138779291 - L1ME3A LINE L1 -60 6110 5729 246 291 55 18 chr9 3492617 3492727 -138778717 + L1ME LINE L1 5532 5645 -476 243 374 61 8 chr9 3492821 3492952 -138778492 - L2 LINE L2 -1 3271 3134 1516 185 10 17 chr9 3493034 3493326 -138778118 - AluJo SINE Alu -18 294 5 368 40 20 0 chr9 3493329 3493379 -138778065 + (TTTA)n Simple_repeat Simple_repeat 1 51 0 524 117 0 0 chr9 3493479 3493556 -138777888 - L1M4 LINE L1 -863 5283 5207 1527 276 29 40 chr9 3493556 3494074 -138777370 - LTR40a LTR ERVL 0 519 8 371 242 32 24 chr9 3494084 3494208 -138777236 - L1ME3A LINE L1 -940 5206 5082 2734 193 46 48 chr9 3494212 3494232 -138777212 - L1ME3A LINE L1 -1022 5124 5105 2341 97 3 0 chr9 3494232 3494531 -138776913 - AluSp SINE Alu -13 300 1 2734 193 46 48 chr9 3494531 3495247 -138776197 - L1ME3A LINE L1 -1041 5105 4389 317 194 216 37 chr9 3495249 3495383 -138776061 - L1ME3A LINE L1 -3851 2295 2138 2061 128 7 3 chr9 3495865 3496170 -138775274 - AluSx SINE Alu -6 306 1 3985 129 48 12 chr9 3497478 3497953 -138773491 + L1MA6 LINE L1 5633 6138 -162 2631 168 12 16 chr9 3497953 3498381 -138773063 + MSTB LTR MaLR 1 426 0 3985 129 48 12 chr9 3498381 3498550 -138772894 + L1MA6 LINE L1 6138 6300 0 346 220 119 90 chr9 3498635 3498812 -138772632 - Charlie8 DNA MER1_type -2164 253 72 2259 99 3 0 chr9 3498962 3499256 -138772188 + AluSx SINE Alu 1 295 -17 324 284 10 49 chr9 3499883 3499985 -138771459 - MIR SINE MIR -161 101 4 244 322 8 50 chr9 3500017 3500138 -138771306 - MIR SINE MIR -63 145 30 986 291 76 46 chr9 3500241 3501188 -138770256 + MERVL LTR ERVL 4156 5209 -555 272 241 76 0 chr9 3501451 3501530 -138769914 + LTR33 LTR ERVL 419 503 -18 2193 113 10 0 chr9 3502658 3502960 -138768484 - AluSg SINE Alu -4 306 2 333 0 0 0 chr9 3503100 3503137 -138768307 + (TA)n Simple_repeat Simple_repeat 2 38 0 448 195 98 32 chr9 3503159 3503282 -138768162 + L1ME1 LINE L1 6036 6166 0 27 0 0 0 chr9 3503855 3503882 -138767562 + AT_rich Low_complexity Low_complexity 1 27 0 23 0 0 0 chr9 3504834 3504857 -138766587 + AT_rich Low_complexity Low_complexity 1 23 0 26 0 0 0 chr9 3511233 3511259 -138760185 + AT_rich Low_complexity Low_complexity 1 26 0 480 273 101 38 chr9 3515242 3515451 -138755993 + MARNA DNA Mariner 11 232 -354 509 296 94 31 chr9 3515525 3515748 -138755696 + MARNA DNA Mariner 328 564 -22 316 122 0 0 chr9 3515760 3515809 -138755635 - MADE1 DNA Mariner -31 49 1 298 241 0 0 chr9 3516800 3516858 -138754586 - L2 LINE L2 0 3313 3256 1722 100 120 12 chr9 3517177 3517431 -138754013 + AluSg SINE Alu 1 283 -23 294 95 0 0 chr9 3517431 3517473 -138753971 + (CAAG)n Simple_repeat Simple_repeat 2 43 0 468 321 92 22 chr9 3517725 3517996 -138753448 + L2 LINE L2 3024 3313 0 254 190 10 30 chr9 3518163 3518263 -138753181 + GA-rich Low_complexity Low_complexity 1 98 0 263 233 0 17 chr9 3519196 3519256 -138752188 + MIR SINE MIR 203 261 -1 811 238 23 0 chr9 3519573 3519745 -138751699 - MER58A DNA MER1_type -1 223 48 1762 152 11 11 chr9 3519746 3520057 -138751387 + AluJb SINE Alu 1 311 0 330 261 0 0 chr9 3520086 3520151 -138751293 - MER58A DNA MER1_type -42 65 1 1599 188 84 81 chr9 3520835 3521343 -138750101 - MLT1D LTR MaLR 0 549 1 358 321 38 47 chr9 3522982 3523194 -138748250 - MIR SINE MIR -6 256 47 234 143 0 24 chr9 3523229 3523271 -138748173 + MIR SINE MIR 34 74 -188 822 95 0 0 chr9 3523277 3523382 -138748062 + AluJb SINE Alu 197 301 -11 1875 75 8 38 chr9 3524139 3524405 -138747039 + AluSp SINE Alu 44 301 -12 1680 258 131 28 chr9 3525075 3525698 -138745746 + MER115 DNA AcHobo 5 4029 -2 379 342 114 5 chr9 3527492 3527685 -138743759 + MIR SINE MIR 32 245 -17 29 78 0 0 chr9 3528291 3528355 -138743089 + AT_rich Low_complexity Low_complexity 1 64 0 39 22 0 0 chr9 3528639 3528685 -138742759 + AT_rich Low_complexity Low_complexity 1 46 0 737 253 43 74 chr9 3529254 3529382 -138742062 + MIR SINE MIR 8 126 -136 2286 98 0 13 chr9 3529382 3529698 -138741746 - AluSx SINE Alu 0 312 1 737 253 43 74 chr9 3529698 3529826 -138741618 + MIR SINE MIR 126 256 -6 603 268 41 130 chr9 3529952 3530344 -138741100 + L2 LINE L2 2914 3270 -2 319 324 36 18 chr9 3530351 3530462 -138740982 - MIR SINE MIR -66 142 30 381 316 85 32 chr9 3530583 3530920 -138740524 - L2 LINE L2 -225 3047 2682 248 314 25 17 chr9 3530938 3531056 -138740388 - L2 LINE L2 -797 2517 2399 641 239 97 85 chr9 3532735 3532982 -138738462 + MIR SINE MIR 12 261 -1 23 68 0 0 chr9 3534277 3534321 -138737123 + AT_rich Low_complexity Low_complexity 1 44 0 225 65 0 0 chr9 3534422 3534453 -138736991 + (TG)n Simple_repeat Simple_repeat 2 32 0 188 353 77 47 chr9 3534718 3534888 -138736556 + MIR SINE MIR 32 206 -56 24 0 0 0 chr9 3535332 3535356 -138736088 + AT_rich Low_complexity Low_complexity 1 24 0 25 31 0 0 chr9 3535701 3535733 -138735711 + AT_rich Low_complexity Low_complexity 1 32 0 644 265 127 38 chr9 3535740 3536229 -138735215 + L1ME4a LINE L1 5361 5894 -227 508 235 23 65 chr9 3536383 3536600 -138734844 + L1ME4a LINE L1 5676 5883 -238 1413 174 57 14 chr9 3536746 3537028 -138734416 - AluJo SINE Alu -18 294 1 24 0 0 0 chr9 3537069 3537093 -138734351 + AT_rich Low_complexity Low_complexity 1 24 0 2081 82 4 0 chr9 3537233 3537500 -138733944 - AluSp SINE Alu -4 309 42 917 309 91 9 chr9 3537613 3538133 -138733311 - L2 LINE L2 -3 3310 2738 1212 106 0 0 chr9 3539935 3540096 -138731348 - AluY SINE Alu -16 295 135 210 73 0 98 chr9 3541295 3541336 -138730108 + MER5B DNA MER1_type 25 61 -117 2296 74 0 13 chr9 3541365 3541663 -138729781 - AluY SINE Alu -17 294 1 222 304 20 29 chr9 3541681 3541783 -138729661 - MER5B DNA MER1_type -72 106 6 846 260 0 6 chr9 3541823 3541996 -138729448 - MER5A DNA MER1_type -16 173 2 213 336 136 9 chr9 3543467 3543577 -138727867 + MIR3 SINE MIR 31 154 -54 250 296 178 46 chr9 3543794 3543946 -138727498 + L2 LINE L2 2247 2418 -896 286 205 47 24 chr9 3544164 3544291 -138727153 + (TA)n Simple_repeat Simple_repeat 2 131 0 321 272 73 32 chr9 3544294 3544540 -138726904 - L1ME4a LINE L1 -161 5960 5705 201 171 0 0 chr9 3545835 3545870 -138725574 + (TA)n Simple_repeat Simple_repeat 2 36 0 256 191 43 0 chr9 3546231 3546325 -138725119 + (TA)n Simple_repeat Simple_repeat 2 99 0 4580 189 18 9 chr9 3546515 3547590 -138723854 - L1MB8 LINE L1 0 6178 5102 379 303 45 30 chr9 3547957 3548089 -138723355 - MIR SINE MIR -128 134 1 1204 282 80 16 chr9 3549082 3549568 -138721876 + LTR33 LTR ERVL 1 517 -4 26 30 0 0 chr9 3549673 3549706 -138721738 + AT_rich Low_complexity Low_complexity 1 33 0 412 289 0 0 chr9 3549914 3550018 -138721426 - MIR SINE MIR -11 251 148 256 196 0 0 chr9 3550432 3550483 -138720961 + MER3 DNA MER1_type 1 51 -158 * 803 237 41 0 chr9 3550480 3550674 -138720770 + MER3 DNA MER1_type 7 208 -1 22 35 0 0 chr9 3553333 3553362 -138718082 + AT_rich Low_complexity Low_complexity 1 29 0 21 0 0 0 chr9 3553694 3553715 -138717729 + AT_rich Low_complexity Low_complexity 1 21 0 767 57 33 8 chr9 3555445 3555567 -138715877 + (GAAA)n Simple_repeat Simple_repeat 2 126 0 584 171 13 26 chr9 3556812 3556964 -138714480 + CT-rich Low_complexity Low_complexity 3 152 0 2264 101 0 3 chr9 3558967 3559264 -138712180 + AluSx SINE Alu 5 300 -12 249 167 0 0 chr9 3560219 3560273 -138711171 + (TA)n Simple_repeat Simple_repeat 2 55 0 587 285 54 51 chr9 3560292 3560643 -138710801 - L1MC4a LINE L1 -157 5964 5610 210 150 0 0 chr9 3562035 3562075 -138709369 + (CA)n Simple_repeat Simple_repeat 1 40 0 30 59 0 0 chr9 3562289 3562340 -138709104 + AT_rich Low_complexity Low_complexity 1 51 0 275 246 85 0 chr9 3563713 3563831 -138707613 - L1ME4a LINE L1 -30 6091 5964 329 349 48 27 chr9 3566041 3566187 -138705257 + MER5B DNA MER1_type 1 149 -29 215 150 50 100 chr9 3566439 3566499 -138704945 - L2 LINE L2 -8 3305 3249 465 287 0 9 chr9 3567898 3568013 -138703431 - L2 LINE L2 0 3272 3159 392 252 29 10 chr9 3568720 3568823 -138702621 - MIR SINE MIR -56 206 102 504 244 78 0 chr9 3569319 3569434 -138702010 + MIR3 SINE MIR 81 204 -4 24 0 0 0 chr9 3571710 3571734 -138699710 + AT_rich Low_complexity Low_complexity 1 24 0 227 224 86 0 chr9 3572821 3572879 -138698565 + MIR SINE MIR 61 123 -85 356 125 16 0 chr9 3572971 3573035 -138698409 + (TCCA)n Simple_repeat Simple_repeat 4 68 0 23 0 0 0 chr9 3574582 3574605 -138696839 + AT_rich Low_complexity Low_complexity 1 23 0 21 36 0 0 chr9 3574670 3574698 -138696746 + AT_rich Low_complexity Low_complexity 1 28 0 263 200 20 0 chr9 3576204 3576254 -138695190 + MER34 LTR ERV1 1 51 -491 1491 175 69 102 chr9 3576265 3576464 -138694980 + MER39 LTR ERV1 232 436 -271 1972 107 0 24 chr9 3576464 3576818 -138694626 + AluSx SINE Alu 1 347 0 1491 175 69 102 chr9 3576818 3577109 -138694335 + MER39 LTR ERV1 436 707 0 1949 101 14 22 chr9 3577196 3577473 -138693971 + AluSc SINE Alu 35 309 0 222 91 0 0 chr9 3578124 3578157 -138693287 + (TG)n Simple_repeat Simple_repeat 2 34 0 304 341 30 22 chr9 3579785 3579920 -138691524 - L2 LINE L2 -19 3294 3159 24 32 0 0 chr9 3579986 3580017 -138691427 + AT_rich Low_complexity Low_complexity 1 31 0 22 0 0 0 chr9 3581292 3581314 -138690130 + AT_rich Low_complexity Low_complexity 1 22 0 22 35 0 0 chr9 3581550 3581579 -138689865 + AT_rich Low_complexity Low_complexity 1 29 0 207 139 0 0 chr9 3581919 3581955 -138689489 + (TA)n Simple_repeat Simple_repeat 1 36 0 33 43 0 0 chr9 3583452 3583499 -138687945 + AT_rich Low_complexity Low_complexity 1 47 0 665 195 0 9 chr9 3583855 3583968 -138687476 - L2 LINE L2 -1 3312 3201 21 36 0 0 chr9 3585833 3585861 -138685583 + AT_rich Low_complexity Low_complexity 1 28 0 186 43 0 0 chr9 3586831 3586854 -138684590 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 21 57 0 0 chr9 3588353 3588388 -138683056 + AT_rich Low_complexity Low_complexity 1 35 0 23 33 0 0 chr9 3589611 3589641 -138681803 + AT_rich Low_complexity Low_complexity 1 30 0 2156 106 43 37 chr9 3589874 3590224 -138681220 + THE1B LTR MaLR 11 362 -2 1632 29 0 10 chr9 3591943 3592147 -138679297 + L1PA4 LINE L1 5954 6155 0 2069 138 19 32 chr9 3592261 3592630 -138678814 + THE1B LTR MaLR 1 364 0 197 337 124 72 chr9 3592714 3592907 -138678537 - L2 LINE L2 -555 2759 2557 282 204 0 97 chr9 3595981 3596074 -138675370 - MIR SINE MIR -62 200 117 359 182 15 15 chr9 3596911 3596977 -138674467 + MER5A DNA MER1_type 3 68 -121 1948 119 7 4 chr9 3596986 3597263 -138674181 + AluSx SINE Alu 3 280 -32 667 251 44 35 chr9 3597381 3597584 -138673860 - MER112 DNA MER1_type 0 260 56 240 200 15 62 chr9 3597614 3597679 -138673765 - MER112 DNA MER1_type -175 85 24 630 85 0 30 chr9 3597974 3598075 -138673369 + L1PA5 LINE L1 10 398 -6063 * 38595 68 3 3 chr9 3598060 3603916 -138667528 + L1PA5 LINE L1 612 6469 0 28 0 0 0 chr9 3603916 3603944 -138667500 + AT_rich Low_complexity Low_complexity 1 28 0 658 217 90 6 chr9 3604551 3604717 -138666727 + MER5A DNA MER1_type 5 184 -5 203 371 21 50 chr9 3605079 3605219 -138666225 + L2 LINE L2 3123 3258 -14 1869 138 6 22 chr9 3605652 3605963 -138665481 + AluSx SINE Alu 1 306 -6 244 254 0 0 chr9 3606073 3606128 -138665316 - L1MC4 LINE L1 -1339 6703 6649 387 0 0 0 chr9 3606150 3606193 -138665251 + (TA)n Simple_repeat Simple_repeat 2 44 0 717 299 56 43 chr9 3606209 3606293 -138665151 - L1MC4 LINE L1 -2000 5808 5727 2030 113 14 7 chr9 3606293 3606585 -138664859 - AluSx SINE Alu -18 294 1 717 299 56 43 chr9 3606585 3606895 -138664549 - L1MC4 LINE L1 -2081 5727 5409 303 298 53 40 chr9 3606904 3607132 -138664312 - L1MC4 LINE L1 -818 5328 5098 455 280 98 43 chr9 3607231 3607831 -138663613 - L1MC4 LINE L1 -1207 4939 4284 2173 118 0 3 chr9 3607831 3608128 -138663316 + AluSx SINE Alu 1 296 -16 455 280 98 43 chr9 3608128 3608282 -138663162 - L1MC4 LINE L1 -1862 4284 4140 21 36 0 0 chr9 3609089 3609117 -138662327 + AT_rich Low_complexity Low_complexity 1 28 0 344 226 89 96 chr9 3609868 3610014 -138661430 + L1MC4a LINE L1 5820 5964 -1844 2179 105 0 10 chr9 3610062 3610376 -138661068 + AluSx SINE Alu 1 311 -1 28 0 0 0 chr9 3610769 3610797 -138660647 + AT_rich Low_complexity Low_complexity 1 28 0 22 35 0 0 chr9 3611003 3611032 -138660412 + AT_rich Low_complexity Low_complexity 1 29 0 180 238 0 0 chr9 3611505 3611568 -138659876 + (TA)n Simple_repeat Simple_repeat 1 63 0 2967 84 10 0 chr9 3611714 3612119 -138659325 - L1PA12 LINE L1 -7 6161 5753 375 262 0 36 chr9 3613740 3613824 -138657620 - MIR3 SINE MIR -19 189 109 2227 112 0 10 chr9 3614504 3614817 -138656627 + AluSx SINE Alu 1 310 -2 305 176 15 0 chr9 3615087 3615155 -138656289 - MER113 DNA MER1_type? -408 113 45 459 282 107 38 chr9 3616417 3616679 -138654765 + L2 LINE L2 1709 1988 -1326 1788 151 71 0 chr9 3617549 3617886 -138653558 - MER46B DNA MER2_type 0 236 1 208 354 89 54 chr9 3617887 3618492 -138652952 + L2 LINE L2 2619 3244 -28 24 32 0 0 chr9 3618918 3618949 -138652495 + AT_rich Low_complexity Low_complexity 1 31 0 636 282 14 53 chr9 3619234 3619443 -138652001 - MIR SINE MIR -4 258 58 2065 98 14 11 chr9 3620219 3620534 -138650910 + AluSx SINE Alu 1 316 0 23 33 0 0 chr9 3620674 3620704 -138650740 + AT_rich Low_complexity Low_complexity 1 30 0 219 390 83 38 chr9 3621614 3622083 -138649361 - L2 LINE L2 0 3313 2824 495 268 52 7 chr9 3622111 3622264 -138649180 - MER112 DNA MER1_type -11 249 90 242 244 12 93 chr9 3622313 3622399 -138649045 - MER112 DNA MER1_type -181 79 1 780 274 98 57 chr9 3622794 3623235 -138648209 + LTR67 LTR ERVL 99 557 0 940 226 0 5 chr9 3623922 3624112 -138647332 - MER5A DNA MER1_type 0 189 1 2164 105 0 3 chr9 3624188 3624484 -138646960 + AluSg SINE Alu 1 295 -15 562 222 40 0 chr9 3624964 3625090 -138646354 - L2 LINE L2 -1 3312 3182 7570 35 0 0 chr9 3625119 3626795 -138644649 + L1PA4 LINE L1 4477 6152 -3 300 289 22 0 chr9 3626808 3626898 -138644546 - L2 LINE L2 -1393 1921 1830 273 282 56 0 chr9 3627005 3627076 -138644368 - L2 LINE L2 -1 3312 3238 21 36 0 0 chr9 3628032 3628060 -138643384 + AT_rich Low_complexity Low_complexity 1 28 0 1263 164 5 14 chr9 3629642 3629861 -138641583 - MER46A DNA MER2_type 0 236 20 281 356 25 19 chr9 3630912 3631072 -138640372 - MIR SINE MIR -27 235 75 297 231 26 39 chr9 3631135 3631213 -138640231 - L2 LINE L2 -40 3273 3197 24 32 0 0 chr9 3631492 3631523 -138639921 + AT_rich Low_complexity Low_complexity 1 31 0 2060 131 3 3 chr9 3632419 3632717 -138638727 + AluSx SINE Alu 1 298 -14 1972 248 66 106 chr9 3632879 3632922 -138638522 - L1MC5 LINE L1 -164 7797 7754 2051 125 3 10 chr9 3632922 3633218 -138638226 + AluSq SINE Alu 1 294 -19 1972 248 66 106 chr9 3633218 3635196 -138636248 - L1MC5 LINE L1 -207 7754 5848 5325 170 55 28 chr9 3635403 3636650 -138634794 + L1MC1 LINE L1 5042 6322 -11 22 0 0 0 chr9 3636724 3636746 -138634698 + AT_rich Low_complexity Low_complexity 1 22 0 207 0 0 0 chr9 3636853 3636876 -138634568 + (CAA)n Simple_repeat Simple_repeat 2 24 0 399 312 104 21 chr9 3636967 3637246 -138634198 + L1ME4a LINE L1 5257 5558 -612 237 243 40 59 chr9 3637428 3637580 -138633864 + L1ME4a LINE L1 5777 5925 -1883 210 284 15 0 chr9 3637587 3637654 -138633790 + (TA)n Simple_repeat Simple_repeat 2 69 0 234 225 0 67 chr9 3637657 3637746 -138633698 + L1ME4a LINE L1 5937 6019 -102 23 78 0 0 chr9 3637826 3637877 -138633567 + AT_rich Low_complexity Low_complexity 1 51 0 4144 264 113 50 chr9 3637977 3638259 -138633185 + L1MEc LINE L1 31 294 -5921 4089 27 0 0 chr9 3638259 3638738 -138632706 + L1PA3 LINE L1 5674 6152 -3 4144 264 113 50 chr9 3638738 3639683 -138631761 + L1MEc LINE L1 294 1178 -5037 334 265 0 0 chr9 3639683 3639766 -138631678 + FLAM SINE Alu 43 125 -8 4144 264 113 50 chr9 3639766 3641536 -138629908 + L1MEc LINE L1 1178 2836 -3379 471 35 0 0 chr9 3641536 3641593 -138629851 + (GGAA)n Simple_repeat Simple_repeat 1 57 0 4144 264 113 50 chr9 3641593 3642321 -138629123 + L1MEc LINE L1 2836 4042 -2173 438 69 0 0 chr9 3642321 3642379 -138629065 + (CA)n Simple_repeat Simple_repeat 2 59 0 4144 264 113 50 chr9 3642379 3642467 -138628977 + L1MEc LINE L1 4042 4123 -2092 26 30 0 0 chr9 3642785 3642818 -138628626 + AT_rich Low_complexity Low_complexity 1 33 0 465 174 58 0 chr9 3642826 3642947 -138628497 + L1M4 LINE L1 2904 3031 -3115 1735 145 20 3 chr9 3642956 3643259 -138628185 + L1MA4 LINE L1 5978 6285 -15 182 329 34 67 chr9 3643496 3643645 -138627799 + MIR SINE MIR 107 250 -12 2316 110 27 19 chr9 3644054 3644426 -138627018 - THE1C LTR MaLR 0 375 1 22 56 0 0 chr9 3645111 3645147 -138626297 + AT_rich Low_complexity Low_complexity 1 36 0 713 138 0 17 chr9 3646948 3647064 -138624380 + FLAM_C SINE Alu 28 141 -2 1616 160 4 0 chr9 3647079 3647356 -138624088 + AluJb SINE Alu 33 310 0 228 266 31 94 chr9 3648961 3649089 -138622355 - MIR SINE MIR -33 229 110 388 200 166 35 chr9 3649173 3649265 -138622179 - MER113 DNA MER1_type? 0 521 442 1997 131 0 7 chr9 3649265 3649556 -138621888 - AluSc SINE Alu -20 289 1 388 200 166 35 chr9 3649556 3649608 -138621836 - MER113 DNA MER1_type? -79 442 358 2214 81 14 3 chr9 3650402 3650697 -138620747 + AluSc SINE Alu 1 298 -11 298 314 62 67 chr9 3651382 3651592 -138619852 - MLT1I LTR MaLR -119 290 82 812 54 8 31 chr9 3652006 3652136 -138619308 + (TTTC)n Simple_repeat Simple_repeat 2 128 0 1430 251 115 6 chr9 3652472 3652971 -138618473 + MLT1E2 LTR MaLR 92 626 0 23 68 0 0 chr9 3653612 3653656 -138617788 + AT_rich Low_complexity Low_complexity 1 44 0 251 305 76 19 chr9 3654301 3654406 -138617038 + L2 LINE L2 3198 3308 -5 1722 185 55 9 chr9 3654528 3654874 -138616570 - MLT1A1 LTR MaLR -1 364 3 205 26 53 26 chr9 3655195 3655233 -138616211 + (TTTG)n Simple_repeat Simple_repeat 1 39 0 2133 41 3 45 chr9 3655235 3655525 -138615919 - AluY SINE Alu -33 278 1 30 0 0 0 chr9 3655563 3655593 -138615851 + AT_rich Low_complexity Low_complexity 1 30 0 42 20 0 0 chr9 3655847 3655896 -138615548 + AT_rich Low_complexity Low_complexity 1 49 0 497 218 80 80 chr9 3655901 3656089 -138615355 + L1ME2 LINE L1 5966 6153 -11 28 48 0 0 chr9 3656396 3656438 -138615006 + AT_rich Low_complexity Low_complexity 1 42 0 366 355 86 19 chr9 3657030 3657298 -138614146 + L3b LINE CR1 1105 1390 -193 1238 288 49 14 chr9 3657442 3657872 -138613572 + LTR16C LTR ERVL 43 487 -4 1832 109 0 117 chr9 3657920 3658270 -138613174 - AluSg1 SINE Alu 0 309 1 350 280 56 0 chr9 3658516 3658641 -138612803 + MER113 DNA MER1_type? 309 440 -81 289 255 143 0 chr9 3658880 3658978 -138612466 + MIR3 SINE MIR 74 185 -23 223 263 13 26 chr9 3659085 3659161 -138612283 + GA-rich Low_complexity Low_complexity 3 77 0 2062 111 0 0 chr9 3659181 3659461 -138611983 + AluY SINE Alu 1 280 -31 297 75 0 0 chr9 3659461 3659501 -138611943 + (CA)n Simple_repeat Simple_repeat 1 40 0 3729 126 52 56 chr9 3659505 3660237 -138611207 + L1MB2 LINE L1 5432 6164 -7 181 339 18 0 chr9 3660252 3660308 -138611136 + MIR3 SINE MIR 137 193 -15 2197 105 0 0 chr9 3661064 3661358 -138610086 + AluY SINE Alu 1 294 -17 2968 215 59 48 chr9 3661391 3661956 -138609488 + L1ME1 LINE L1 5318 5887 -279 7454 31 7 0 chr9 3661956 3662984 -138608460 + L1PA5 LINE L1 5119 6152 -2 2968 215 59 48 chr9 3662984 3663256 -138608188 + L1ME1 LINE L1 5887 6154 -12 297 179 38 19 chr9 3663315 3663421 -138608023 - Charlie7 DNA MER1_type -74 2538 2431 672 282 143 27 chr9 3663421 3663793 -138607651 - Charlie7 DNA MER1_type -1892 720 306 2163 131 3 0 chr9 3663929 3664241 -138607203 - AluSq SINE Alu 0 313 1 451 302 93 22 chr9 3664440 3664708 -138606736 - L2 LINE L2 0 3313 3027 411 21 0 0 chr9 3665265 3665313 -138606131 + (TTTA)n Simple_repeat Simple_repeat 2 49 0 2083 108 10 7 chr9 3665316 3665612 -138605832 - AluSq SINE Alu -16 297 1 182 313 0 0 chr9 3665837 3665885 -138605559 + L2 LINE L2 3209 3256 -16 299 271 0 14 chr9 3665889 3665968 -138605476 - MIR SINE MIR -81 127 49 21 71 0 0 chr9 3666389 3666431 -138605013 + AT_rich Low_complexity Low_complexity 1 42 0 213 39 0 0 chr9 3667308 3667334 -138604110 + (TTTG)n Simple_repeat Simple_repeat 3 28 0 22 0 0 0 chr9 3667381 3667403 -138604041 + AT_rich Low_complexity Low_complexity 1 22 0 712 186 23 8 chr9 3667450 3667579 -138603865 - FRAM SINE Alu -45 131 1 390 246 79 0 chr9 3668427 3668541 -138602903 - L1MC4 LINE L1 0 8042 7920 195 42 0 0 chr9 3669126 3669150 -138602294 + (TTTTG)n Simple_repeat Simple_repeat 3 26 0 345 289 96 26 chr9 3669839 3669995 -138601449 + MIR SINE MIR 96 262 0 208 348 79 22 chr9 3670159 3670386 -138601058 + L2 LINE L2 2835 3074 -239 1851 135 83 0 chr9 3670812 3671101 -138600343 + AluSp SINE Alu 1 313 0 200 213 0 0 chr9 3671670 3671717 -138599727 + (TAA)n Simple_repeat Simple_repeat 1 47 0 445 353 54 5 chr9 3671717 3671941 -138599503 - MIR SINE MIR 0 262 28 208 376 21 0 chr9 3672433 3672526 -138598918 + L2 LINE L2 2941 3035 -237 201 167 0 0 chr9 3672670 3672700 -138598744 + L2 LINE L2 3206 3235 -37 * 221 300 0 0 chr9 3672699 3672749 -138598695 - L3 LINE CR1 -469 1108 1059 23 0 0 0 chr9 3672749 3672772 -138598672 + AT_rich Low_complexity Low_complexity 1 23 0 1587 179 100 3 chr9 3674940 3675269 -138596175 + MER46B DNA MER2_type 1 236 0 742 124 0 18 chr9 3675505 3675618 -138595826 + THE1B LTR MaLR 1 111 -253 1678 93 0 72 chr9 3675622 3675900 -138595544 + THE1-int LTR MaLR 1 258 -1322 2179 133 8 31 chr9 3675913 3676273 -138595171 + THE1B LTR MaLR 13 364 0 368 17 317 0 chr9 3676290 3676350 -138595094 - MADE1 DNA Mariner 0 80 2 338 238 20 0 chr9 3677076 3677177 -138594267 - MER113 DNA MER1_type? -323 198 96 757 258 104 43 chr9 3677185 3678197 -138593247 + HAL1 LINE L1 380 1534 -973 488 244 18 18 chr9 3678184 3678348 -138593096 + HAL1 LINE L1 2022 2185 -322 * 186 43 0 0 chr9 3678431 3678454 -138592990 + (TGGG)n Simple_repeat Simple_repeat 1 23 0 446 291 20 45 chr9 3678514 3678713 -138592731 + HAL1 LINE L1 2285 2478 -29 21 36 0 0 chr9 3679104 3679132 -138592312 + AT_rich Low_complexity Low_complexity 1 28 0 1086 212 4 4 chr9 3679143 3679374 -138592070 + L1PB4 LINE L1 5925 6155 -1 21 36 0 0 chr9 3679530 3679558 -138591886 + AT_rich Low_complexity Low_complexity 1 28 0 2287 77 7 3 chr9 3679566 3679866 -138591578 + AluY SINE Alu 1 301 -10 204 312 205 9 chr9 3680365 3680580 -138590864 - L2 LINE L2 -5 3308 3052 328 217 0 72 chr9 3680647 3680730 -138590714 + L2 LINE L2 3232 3308 -5 6534 37 2 1 chr9 3681425 3682218 -138589226 - L1PA4 LINE L1 0 6155 5362 201 256 0 0 chr9 3682219 3682258 -138589186 + L3 LINE CR1 1526 1564 -13 410 296 140 34 chr9 3682885 3683064 -138588380 - MIR3 SINE MIR -9 199 2 457 297 30 30 chr9 3683156 3683321 -138588123 - MIR SINE MIR 0 262 98 352 254 164 0 chr9 3683370 3683480 -138587964 - Charlie8 DNA MER1_type -2190 227 100 632 0 0 0 chr9 3684236 3684312 -138587132 + L1HS LINE L1 6080 6155 0 312 282 55 55 chr9 3684407 3684537 -138586907 + Charlie8 DNA MER1_type 7 139 -202 2002 135 0 28 chr9 3684537 3684855 -138586589 + AluSq SINE Alu 1 309 -4 312 282 55 55 chr9 3684855 3684887 -138586557 + Charlie8 DNA MER1_type 138 169 -172 2168 111 3 0 chr9 3685054 3685352 -138586092 + AluSg SINE Alu 1 299 -11 380 211 0 0 chr9 3685500 3685576 -138585868 - MIR SINE MIR -106 156 81 850 258 41 9 chr9 3686134 3686355 -138585089 - MIR SINE MIR -33 229 2 32 26 0 0 chr9 3688035 3688074 -138583370 + AT_rich Low_complexity Low_complexity 1 39 0 446 295 54 63 chr9 3690235 3690550 -138580894 + L2 LINE L2 1762 2073 -1241 201 158 0 0 chr9 3690582 3690620 -138580824 + A-rich Low_complexity Low_complexity 5 42 0 216 367 0 46 chr9 3690700 3690809 -138580635 + L2 LINE L2 2207 2310 -1004 418 325 61 99 chr9 3691249 3691331 -138580113 + L2 LINE L2 2842 2926 -346 1695 165 3 25 chr9 3691331 3691646 -138579798 - AluJb SINE Alu -4 308 1 418 325 61 99 chr9 3691646 3692006 -138579438 + L2 LINE L2 2926 3267 -5 406 198 113 19 chr9 3692695 3692801 -138578643 - MIR SINE MIR -49 213 98 23 0 0 0 chr9 3692801 3692824 -138578620 + AT_rich Low_complexity Low_complexity 1 23 0 222 62 0 0 chr9 3693966 3693998 -138577446 + (TC)n Simple_repeat Simple_repeat 1 32 0 * 285 135 0 0 chr9 3693997 3694049 -138577395 + (CA)n Simple_repeat Simple_repeat 1 52 0 290 315 170 6 chr9 3695170 3695335 -138576109 - MIR3 SINE MIR -7 201 10 558 0 0 0 chr9 3695546 3695608 -138575836 + (TG)n Simple_repeat Simple_repeat 1 62 0 1472 175 77 0 chr9 3696754 3697039 -138574405 - AluJb SINE Alu -5 307 1 923 103 0 0 chr9 3697057 3697183 -138574261 - AluSq/x SINE Alu -180 132 7 298 370 82 32 chr9 3699406 3699625 -138571819 - MIR SINE MIR -13 249 20 307 247 78 0 chr9 3699884 3699961 -138571483 + L1MC4 LINE L1 6614 6696 -1346 624 219 0 0 chr9 3700031 3700200 -138571244 + (TA)n Simple_repeat Simple_repeat 2 170 0 302 247 0 62 chr9 3700201 3700298 -138571146 + L1MC4 LINE L1 6613 6703 -1339 216 216 0 0 chr9 3700301 3700352 -138571092 + (TA)n Simple_repeat Simple_repeat 2 52 0 244 254 0 0 chr9 3700614 3700669 -138570775 - L1MC4 LINE L1 -1339 6703 6649 387 0 0 0 chr9 3700691 3700734 -138570710 + (TA)n Simple_repeat Simple_repeat 1 43 0 707 301 56 43 chr9 3700750 3700834 -138570610 - L1MC4 LINE L1 -2000 5808 5727 2030 113 14 7 chr9 3700834 3701126 -138570318 - AluSx SINE Alu -18 294 1 707 301 56 43 chr9 3701126 3701436 -138570008 - L1MC4 LINE L1 -2081 5727 5409 596 281 107 48 chr9 3701772 3702372 -138569072 - L1MC4 LINE L1 -1207 4939 4283 2173 118 0 3 chr9 3702372 3702669 -138568775 + AluSx SINE Alu 1 296 -16 596 281 107 48 chr9 3702669 3702823 -138568621 - L1MC4 LINE L1 -1863 4283 4140 21 36 0 0 chr9 3703629 3703657 -138567787 + AT_rich Low_complexity Low_complexity 1 28 0 344 226 89 96 chr9 3704408 3704554 -138566890 + L1MC4a LINE L1 5820 5964 -1844 2179 105 0 10 chr9 3704602 3704916 -138566528 + AluSx SINE Alu 1 311 -1 28 0 0 0 chr9 3705309 3705337 -138566107 + AT_rich Low_complexity Low_complexity 1 28 0 22 35 0 0 chr9 3705543 3705572 -138565872 + AT_rich Low_complexity Low_complexity 1 29 0 180 238 0 0 chr9 3706045 3706108 -138565336 + (TA)n Simple_repeat Simple_repeat 2 64 0 2906 89 10 2 chr9 3706254 3706660 -138564784 - L1PA12 LINE L1 -7 6161 5753 375 262 0 36 chr9 3708281 3708365 -138563079 - MIR3 SINE MIR -19 189 109 2227 112 0 10 chr9 3709045 3709358 -138562086 + AluSx SINE Alu 1 310 -2 305 176 15 0 chr9 3709628 3709696 -138561748 - MER113 DNA MER1_type? -408 113 45 459 282 107 38 chr9 3710958 3711220 -138560224 + L2 LINE L2 1709 1988 -1326 1788 151 71 0 chr9 3712090 3712427 -138559017 - MER46B DNA MER2_type 0 236 1 208 354 89 54 chr9 3712428 3713033 -138558411 + L2 LINE L2 2619 3244 -28 24 32 0 0 chr9 3713459 3713490 -138557954 + AT_rich Low_complexity Low_complexity 1 31 0 636 282 14 53 chr9 3713775 3713984 -138557460 - MIR SINE MIR -4 258 58 2065 98 14 11 chr9 3714760 3715075 -138556369 + AluSx SINE Alu 1 316 0 23 33 0 0 chr9 3715215 3715245 -138556199 + AT_rich Low_complexity Low_complexity 1 30 0 219 390 83 38 chr9 3716156 3716625 -138554819 - L2 LINE L2 0 3313 2824 495 268 52 7 chr9 3716653 3716806 -138554638 - MER112 DNA MER1_type -11 249 90 242 244 12 93 chr9 3716855 3716941 -138554503 - MER112 DNA MER1_type -181 79 1 780 274 98 57 chr9 3717336 3717777 -138553667 + LTR67 LTR ERVL 99 557 0 940 226 0 5 chr9 3718464 3718654 -138552790 - MER5A DNA MER1_type 0 189 1 2092 109 3 3 chr9 3718730 3719024 -138552420 + AluSg SINE Alu 1 294 -16 562 222 40 0 chr9 3719504 3719630 -138551814 - L2 LINE L2 -1 3312 3182 7504 36 2 1 chr9 3719659 3721336 -138550108 + L1PA4 LINE L1 4477 6155 0 328 217 0 72 chr9 3722031 3722114 -138549330 - L2 LINE L2 -5 3308 3232 204 312 205 9 chr9 3722181 3722396 -138549048 + L2 LINE L2 3052 3308 -5 2287 77 7 3 chr9 3722895 3723195 -138548249 - AluY SINE Alu -10 301 1 21 36 0 0 chr9 3723203 3723231 -138548213 + AT_rich Low_complexity Low_complexity 1 28 0 1086 212 4 4 chr9 3723387 3723618 -138547826 - L1PB4 LINE L1 -1 6155 5925 21 36 0 0 chr9 3723629 3723657 -138547787 + AT_rich Low_complexity Low_complexity 1 28 0 446 291 20 45 chr9 3724048 3724247 -138547197 - HAL1 LINE L1 -29 2478 2285 186 43 0 0 chr9 3724307 3724330 -138547114 + (CCCA)n Simple_repeat Simple_repeat 1 23 0 488 244 18 18 chr9 3724413 3724577 -138546867 - HAL1 LINE L1 -322 2185 2022 323 235 10 61 chr9 3724564 3724662 -138546782 - HAL1 LINE L1 -973 1534 1442 * 316 258 30 68 chr9 3724800 3724932 -138546512 + L1MC4 LINE L1 6595 6721 -1321 411 165 0 0 chr9 3724932 3725017 -138546427 + (TA)n Simple_repeat Simple_repeat 1 85 0 775 188 29 0 chr9 3725024 3725162 -138546282 - FRAM SINE Alu -36 140 1 376 279 124 25 chr9 3726031 3726192 -138545252 - MIR SINE MIR -84 178 2 2152 217 112 11 chr9 3726412 3727431 -138544013 + L1MEc LINE L1 1982 3049 -3166 720 271 15 73 chr9 3727857 3728130 -138543314 + MIR SINE MIR 6 262 0 2218 115 0 0 chr9 3728160 3728465 -138542979 - AluSx SINE Alu -7 305 1 21 36 0 0 chr9 3729112 3729140 -138542304 + AT_rich Low_complexity Low_complexity 1 28 0 511 156 0 7 chr9 3729419 3729543 -138541901 + MER2 DNA MER2_type 1 204 -141 303 111 74 25 chr9 3729543 3729624 -138541820 - L1MA4A LINE L1 0 6303 6219 303 291 0 38 chr9 3729633 3729712 -138541732 + MER2 DNA MER2_type 270 345 0 404 205 47 94 chr9 3730228 3730355 -138541089 - MIR SINE MIR -56 206 86 286 327 77 0 chr9 3731369 3731473 -138539971 - MIR SINE MIR -40 222 111 24 0 0 0 chr9 3732688 3732712 -138538732 + AT_rich Low_complexity Low_complexity 1 24 0 2027 197 96 48 chr9 3732940 3733545 -138537899 + L1ME1 LINE L1 5504 6137 -29 320 77 19 0 chr9 3733546 3733598 -138537846 + (TA)n Simple_repeat Simple_repeat 2 54 0 2184 88 0 0 chr9 3733651 3733948 -138537496 + AluY SINE Alu 1 297 -14 2677 19 3 0 chr9 3734424 3734734 -138536710 - AluY SINE Alu 0 311 1 1542 167 13 39 chr9 3735022 3735328 -138536116 + AluJb SINE Alu 1 298 -14 664 249 63 34 chr9 3735706 3736056 -138535388 - L1ME LINE L1 -4879 1663 1304 257 191 0 0 chr9 3736214 3736261 -138535183 - MLT1K LTR MaLR -55 533 487 1110 135 30 30 chr9 3736299 3736499 -138534945 - L1MA5A LINE L1 -23 6274 6075 3203 116 18 60 chr9 3736499 3737049 -138534395 + MER1A DNA MER1_type 1 527 0 261 308 43 16 chr9 3737065 3737250 -138534194 - L1ME LINE L1 -5234 1400 1211 301 79 103 18 chr9 3737280 3737445 -138533999 + (TA)n Simple_repeat Simple_repeat 2 180 0 201 137 77 0 chr9 3737465 3737582 -138533862 + (TA)n Simple_repeat Simple_repeat 2 127 0 755 340 25 14 chr9 3737872 3738240 -138533204 - L1ME LINE L1 -5954 871 500 352 118 118 118 chr9 3738981 3739074 -138532370 - ORSL DNA AcHobo 0 275 183 2562 34 0 0 chr9 3739100 3739396 -138532048 - AluY SINE Alu -15 296 1 215 127 18 36 chr9 3739461 3739516 -138531928 + (TATAA)n Simple_repeat Simple_repeat 3 56 0 192 284 84 84 chr9 3740401 3740496 -138530948 + MIR SINE MIR 38 132 -76 14025 129 29 104 chr9 3740764 3743702 -138527742 + Tigger2 DNA MER2_type 3 2718 0 1107 185 25 0 chr9 3743865 3744065 -138527379 - MER58A DNA MER1_type -19 205 1 414 230 30 10 chr9 3744123 3744223 -138527221 - MER5A DNA MER1_type -79 110 9 355 298 8 58 chr9 3744237 3744358 -138527086 + L2 LINE L2 3199 3313 0 226 396 9 0 chr9 3744594 3744700 -138526744 + L2 LINE L2 2877 2983 -289 4211 121 65 8 chr9 3744845 3745557 -138525887 - Tigger3(Golem) DNA MER2_type -1 3028 2277 652 185 0 0 chr9 3745548 3745656 -138525788 - Tigger3(Golem) DNA MER2_type -2921 108 1 * 369 280 21 0 chr9 3745721 3745814 -138525630 + L2 LINE L2 3178 3272 0 207 0 0 0 chr9 3745877 3745900 -138525544 + (A)n Simple_repeat Simple_repeat 1 23 0 23 0 0 0 chr9 3747012 3747035 -138524409 + AT_rich Low_complexity Low_complexity 1 23 0 6811 240 124 21 chr9 3748493 3751165 -138520279 + L1ME1 LINE L1 2125 5074 -1141 3474 212 128 70 chr9 3751164 3751382 -138520062 + L1MC3 LINE L1 6371 6575 -1210 * 216 0 0 0 chr9 3751382 3751406 -138520038 + (GA)n Simple_repeat Simple_repeat 1 24 0 3474 212 128 70 chr9 3751406 3751903 -138519541 + L1MC3 LINE L1 6575 7042 -743 289 310 0 0 chr9 3751903 3751974 -138519470 + MLT1F1 LTR MaLR 64 134 -433 3474 212 128 70 chr9 3751974 3751991 -138519453 + L1MC3 LINE L1 7042 7057 -728 2226 95 0 0 chr9 3751991 3752296 -138519148 + AluSq SINE Alu 1 305 0 3474 212 128 70 chr9 3752296 3752827 -138518617 + L1MC3 LINE L1 7057 7784 -1 3170 214 59 29 chr9 3752823 3753265 -138518179 + L1ME1 LINE L1 5061 5488 -747 * 5180 84 13 0 chr9 3753265 3753963 -138517481 - L1PA11 LINE L1 0 6174 5468 3170 214 59 29 chr9 3753963 3754673 -138516771 + L1ME1 LINE L1 5488 6230 -5 737 318 32 48 chr9 3754691 3755065 -138516379 + L3 LINE CR1 1183 1550 -27 230 301 126 7 chr9 3755394 3755537 -138515907 - MIR SINE MIR 0 262 103 504 374 161 15 chr9 3755808 3756212 -138515232 + L2 LINE L2 2810 3272 0 1523 188 3 24 chr9 3758663 3758951 -138512493 - AluJo SINE Alu -30 282 1 461 260 64 46 chr9 3759171 3759344 -138512100 + MIR SINE MIR 70 245 -17 1632 150 25 50 chr9 3759709 3760029 -138511415 + AluJo SINE Alu 1 312 0 22 0 0 0 chr9 3760258 3760280 -138511164 + AT_rich Low_complexity Low_complexity 1 22 0 202 244 0 0 chr9 3760504 3760549 -138510895 + T-rich Low_complexity Low_complexity 1 45 0 1715 161 40 83 chr9 3761063 3761395 -138510049 + L1MC3 LINE L1 6696 7008 -777 1768 143 32 4 chr9 3761395 3761674 -138509770 + AluJb SINE Alu 1 287 -25 1715 161 40 83 chr9 3761674 3761762 -138509682 + L1MC3 LINE L1 7008 7098 -687 246 284 0 15 chr9 3761762 3761829 -138509615 + MLT1F1 LTR MaLR 45 110 -457 608 144 0 9 chr9 3761853 3761964 -138509480 + L1MC3 LINE L1 7674 7783 -2 1468 196 0 8 chr9 3762440 3762705 -138508739 + AluJo SINE Alu 1 263 -49 453 290 30 8 chr9 3763143 3763274 -138508170 + MIR SINE MIR 98 231 -31 2108 114 0 33 chr9 3763555 3763861 -138507583 + AluSx SINE Alu 6 301 -11 38 22 0 0 chr9 3763978 3764023 -138507421 + AT_rich Low_complexity Low_complexity 1 45 0 250 272 161 44 chr9 3764910 3765101 -138506343 - MIR3 SINE MIR -46 216 3 234 365 65 35 chr9 3765163 3765363 -138506081 + L2 LINE L2 2624 2829 -485 216 0 0 0 chr9 3765494 3765518 -138505926 + (TTCCC)n Simple_repeat Simple_repeat 4 27 0 291 278 15 91 chr9 3765535 3765733 -138505711 + L2 LINE L2 3083 3265 -48 1242 305 165 46 chr9 3765917 3766028 -138505416 - L3 LINE CR1 -471 1106 1010 850 212 111 49 chr9 3766028 3766372 -138505072 - MLT1A1 LTR MaLR 0 365 1 1242 305 165 46 chr9 3766372 3766998 -138504446 - L3 LINE CR1 -567 1010 233 2306 96 20 0 chr9 3766998 3767301 -138504143 + AluSc SINE Alu 1 309 0 1242 305 165 46 chr9 3767301 3767493 -138503951 - L3 LINE CR1 -1344 233 65 407 351 100 41 chr9 3767895 3768214 -138503230 - L2 LINE L2 -1 3271 2934 203 417 10 0 chr9 3769048 3769144 -138502300 + L3 LINE CR1 1472 1568 -9 21 0 0 0 chr9 3770555 3770576 -138500868 + AT_rich Low_complexity Low_complexity 1 21 0 45 0 0 0 chr9 3771202 3771247 -138500197 + AT_rich Low_complexity Low_complexity 1 45 0 4259 228 89 37 chr9 3772165 3773801 -138497643 + L1ME1 LINE L1 3591 5310 -836 1435 178 4 12 chr9 3773820 3774079 -138497365 + AluJo SINE Alu 1 257 -55 3111 200 71 28 chr9 3774098 3774912 -138496532 + L1ME1 LINE L1 5313 6161 -5 1974 149 0 41 chr9 3775419 3775735 -138495709 - AluSx SINE Alu -9 303 1 237 339 73 40 chr9 3776349 3776473 -138494971 - MIR3 SINE MIR -66 142 15 21 36 0 0 chr9 3776512 3776540 -138494904 + AT_rich Low_complexity Low_complexity 1 28 0 280 91 436 0 chr9 3776640 3776695 -138494749 - MADE1 DNA Mariner -1 79 1 244 267 0 0 chr9 3777167 3777257 -138494187 + L1MC4 LINE L1 6614 6703 -1339 310 228 33 43 chr9 3777278 3777370 -138494074 + L1MC4 LINE L1 6612 6702 -1340 235 225 22 67 chr9 3777389 3777478 -138493966 - L1MC4 LINE L1 -1339 6703 6619 285 98 0 0 chr9 3778947 3778988 -138492456 + (A)n Simple_repeat Simple_repeat 1 41 0 674 37 0 0 chr9 3779913 3779994 -138491450 + AluSg/x SINE Alu 216 296 -13 2403 62 0 43 chr9 3780435 3780759 -138490685 - AluY SINE Alu -1 310 1 274 233 14 41 chr9 3780949 3781022 -138490422 + MIR3 SINE MIR 127 197 -11 280 266 127 52 chr9 3781123 3781296 -138490148 - MIR SINE MIR -41 221 36 449 268 45 76 chr9 3781390 3781588 -138489856 - MIR SINE MIR -70 192 1 548 300 68 11 chr9 3782373 3782563 -138488881 + MIR SINE MIR 4 204 -58 764 169 22 7 chr9 3784104 3784240 -138487204 - MER5A DNA MER1_type -51 138 1 294 276 114 16 chr9 3784697 3784820 -138486624 - MIR SINE MIR -105 157 23 1982 146 3 13 chr9 3784946 3785261 -138486183 + AluJo SINE Alu 1 312 0 6591 66 6 75 chr9 3785344 3786328 -138485116 - LTR13 LTR ERVK 0 1007 92 822 124 23 0 chr9 3786332 3786461 -138484983 - LTR13 LTR ERVK -875 132 1 563 295 68 11 chr9 3786960 3787150 -138484294 + MIR SINE MIR 4 204 -58 1474 223 117 7 chr9 3787386 3787812 -138483632 - L1M4c LINE L1 -4550 1834 1362 210 270 48 0 chr9 3789361 3789424 -138482020 + MIR3 SINE MIR 90 155 -53 334 210 151 8 chr9 3789452 3789571 -138481873 - MIR SINE MIR -16 246 111 270 0 0 0 chr9 3790267 3790297 -138481147 + (T)n Simple_repeat Simple_repeat 1 30 0 1664 161 124 16 chr9 3790461 3790847 -138480597 + MSTA LTR MaLR 1 428 0 2293 85 7 0 chr9 3792216 3792510 -138478934 + AluSp SINE Alu 1 296 -17 955 203 77 55 chr9 3792514 3792565 -138478879 + L1ME2 LINE L1 5730 5778 -386 1668 195 7 10 chr9 3792565 3792872 -138478572 + AluJo SINE Alu 1 306 -6 955 203 77 55 chr9 3792872 3793130 -138478314 + L1ME2 LINE L1 5778 6046 -118 706 222 124 0 chr9 3793130 3793315 -138478129 - MER3 DNA MER1_type 0 209 2 488 210 24 12 chr9 3794248 3794415 -138477029 + CT-rich Low_complexity Low_complexity 6 174 0 459 0 0 0 chr9 3796930 3796981 -138474463 + (CA)n Simple_repeat Simple_repeat 1 51 0 35 24 0 0 chr9 3797588 3797630 -138473814 + GC_rich Low_complexity Low_complexity 1 42 0 277 242 0 0 chr9 3797760 3797826 -138473618 + (CA)n Simple_repeat Simple_repeat 1 66 0 290 26 26 0 chr9 3797904 3797943 -138473501 + (GGA)n Simple_repeat Simple_repeat 1 40 0 276 77 0 0 chr9 3798029 3798068 -138473376 + (GA)n Simple_repeat Simple_repeat 2 40 0 222 37 0 0 chr9 3798187 3798214 -138473230 + (CA)n Simple_repeat Simple_repeat 1 27 0 27 29 0 0 chr9 3799308 3799342 -138472102 + AT_rich Low_complexity Low_complexity 1 34 0 1499 208 10 17 chr9 3799783 3800071 -138471373 + AluJo SINE Alu 1 286 -26 1165 175 0 54 chr9 3800638 3800861 -138470583 - AluJo SINE Alu -17 295 85 733 247 123 0 chr9 3801044 3801271 -138470173 + MIR SINE MIR 8 262 0 1598 161 11 90 chr9 3802507 3802885 -138468559 - MER7A DNA MER2_type 0 346 1 412 288 106 8 chr9 3803458 3803590 -138467854 + MIR3 SINE MIR 59 203 -5 198 0 0 0 chr9 3804013 3804035 -138467409 + (GA)n Simple_repeat Simple_repeat 2 23 0 22 43 0 21 chr9 3804387 3804413 -138467031 + AT_rich Low_complexity Low_complexity 1 27 -19 2380 82 0 0 chr9 3804413 3804705 -138466739 + AluY SINE Alu 1 292 -19 22 43 0 21 chr9 3804705 3804725 -138466719 + AT_rich Low_complexity Low_complexity 27 46 0 21 36 0 0 chr9 3804874 3804902 -138466542 + AT_rich Low_complexity Low_complexity 1 28 0 1290 177 62 11 chr9 3806024 3806324 -138465120 + AluJb SINE Alu 13 325 0 23 68 0 0 chr9 3808198 3808242 -138463202 + AT_rich Low_complexity Low_complexity 1 44 0 1101 148 55 0 chr9 3808664 3808866 -138462578 - L1MA3 LINE L1 -1 6304 6092 282 233 140 107 chr9 3810775 3810925 -138460519 - MIR3 SINE MIR -25 183 29 210 37 0 0 chr9 3811783 3811810 -138459634 + (TG)n Simple_repeat Simple_repeat 2 28 0 184 375 0 0 chr9 3812759 3812815 -138458629 - L2 LINE L2 -69 3203 3148 1223 217 126 10 chr9 3812869 3813178 -138458266 - MER2 DNA MER2_type 0 345 1 505 278 176 14 chr9 3813185 3813401 -138458043 + MIR SINE MIR 12 262 0 214 258 0 0 chr9 3814036 3814102 -138457342 + (TA)n Simple_repeat Simple_repeat 1 66 0 22 0 0 0 chr9 3814533 3814555 -138456889 + AT_rich Low_complexity Low_complexity 1 22 0 533 242 32 112 chr9 3814752 3815091 -138456353 - L2 LINE L2 0 3313 3002 286 202 79 0 chr9 3815260 3815374 -138456070 + T-rich Low_complexity Low_complexity 5 127 0 3226 250 60 76 chr9 3815538 3817034 -138454410 - L1M4 LINE L1 -5057 1485 14 22 35 0 0 chr9 3817124 3817153 -138454291 + AT_rich Low_complexity Low_complexity 1 29 0 502 278 73 28 chr9 3817792 3818234 -138453210 - MLT1G1 LTR MaLR -11 584 45 367 277 20 68 chr9 3818427 3818575 -138452869 + MIR SINE MIR 71 211 -51 488 308 87 5 chr9 3818768 3818953 -138452491 - MIR SINE MIR 0 262 63 225 300 0 0 chr9 3818959 3819009 -138452435 + L2 LINE L2 3263 3312 -1 23 33 0 0 chr9 3819195 3819225 -138452219 + AT_rich Low_complexity Low_complexity 1 30 0 658 326 100 16 chr9 3819394 3819882 -138451562 + L1ME LINE L1 5268 5796 -325 346 249 116 52 chr9 3820908 3821081 -138450363 + MER20 DNA MER1_type 29 212 -7 233 212 212 0 chr9 3821093 3821159 -138450285 + L2 LINE L2 3229 3308 -5 208 287 161 0 chr9 3821463 3821550 -138449894 + MIR SINE MIR 12 112 -150 427 297 27 60 chr9 3821562 3821632 -138449812 + MIR SINE MIR 84 155 -107 766 248 97 19 chr9 3821632 3821942 -138449502 - MER46C DNA MER2_type 0 338 5 427 297 27 60 chr9 3821942 3822056 -138449388 + MIR SINE MIR 155 262 0 1251 176 9 94 chr9 3822518 3822836 -138448608 + AluJo SINE Alu 1 291 -21 28 48 0 0 chr9 3822836 3822878 -138448566 + AT_rich Low_complexity Low_complexity 1 42 0 297 315 79 0 chr9 3823008 3823135 -138448309 - MIR SINE MIR -6 256 120 2340 84 10 3 chr9 3823558 3823869 -138447575 + AluSp SINE Alu 1 313 0 769 163 0 15 chr9 3824736 3824871 -138446573 - FLAM_C SINE Alu 0 133 1 25 31 0 0 chr9 3825498 3825530 -138445914 + AT_rich Low_complexity Low_complexity 1 32 0 211 257 71 62 chr9 3825576 3825689 -138445755 + MIR SINE MIR 99 212 -50 21 57 0 0 chr9 3826824 3826859 -138444585 + AT_rich Low_complexity Low_complexity 1 35 0 26 64 0 0 chr9 3828133 3828180 -138443264 + AT_rich Low_complexity Low_complexity 1 47 0 21 57 0 0 chr9 3828509 3828544 -138442900 + AT_rich Low_complexity Low_complexity 1 35 0 235 191 12 143 chr9 3829791 3829875 -138441569 - L2 LINE L2 -14 3299 3227 322 320 55 17 chr9 3830057 3830238 -138441206 + MER115 DNA AcHobo 1 188 -505 545 306 120 45 chr9 3830291 3830667 -138440777 + MER115 DNA AcHobo 290 693 0 2375 70 3 0 chr9 3831118 3831416 -138440028 + AluY SINE Alu 1 299 -12 273 57 0 0 chr9 3831416 3831451 -138439993 + (TA)n Simple_repeat Simple_repeat 1 35 0 276 244 37 0 chr9 3832001 3832081 -138439363 - Charlie1 DNA MER1_type -10 2751 2669 504 248 62 76 chr9 3832081 3832291 -138439153 + MER63A DNA MER1_type 1 207 -3 947 182 148 14 chr9 3832293 3832584 -138438860 - Charlie1 DNA MER1_type -85 2676 2347 254 130 0 37 chr9 3832789 3832843 -138438601 + (TATATG)n Simple_repeat Simple_repeat 2 53 0 328 340 19 0 chr9 3834368 3834471 -138436973 - MIR SINE MIR -111 151 47 26 0 0 0 chr9 3837135 3837161 -138434283 + AT_rich Low_complexity Low_complexity 1 26 0 195 114 0 0 chr9 3837971 3838006 -138433438 + (CAAAG)n Simple_repeat Simple_repeat 5 39 0 2124 138 3 3 chr9 3839260 3839572 -138431872 - AluSx SINE Alu 0 312 1 25 0 0 0 chr9 3839577 3839602 -138431842 + AT_rich Low_complexity Low_complexity 1 25 0 2310 59 3 26 chr9 3839685 3839991 -138431453 + AluY SINE Alu 1 299 -12 21 36 0 0 chr9 3840987 3841015 -138430429 + AT_rich Low_complexity Low_complexity 1 28 0 23 0 0 0 chr9 3841112 3841135 -138430309 + AT_rich Low_complexity Low_complexity 1 23 0 237 65 0 0 chr9 3841813 3841844 -138429600 + (TC)n Simple_repeat Simple_repeat 2 32 0 517 36 102 18 chr9 3841845 3842011 -138429433 + (TA)n Simple_repeat Simple_repeat 1 180 0 378 121 75 46 chr9 3842033 3842267 -138429177 + (TA)n Simple_repeat Simple_repeat 1 240 0 1652 173 7 3 chr9 3843398 3843682 -138427762 - AluJo SINE Alu -27 285 1 1306 44 0 0 chr9 3844491 3844651 -138426793 + L1PA5 LINE L1 5793 5952 -202 4420 157 32 11 chr9 3844751 3845573 -138425871 - L1MA8 LINE L1 -165 6126 5288 1881 141 7 14 chr9 3846348 3846639 -138424805 + AluSx SINE Alu 1 289 -23 263 220 0 30 chr9 3846919 3847019 -138424425 + (TA)n Simple_repeat Simple_repeat 2 98 0 368 304 36 60 chr9 3847191 3847527 -138423917 - L1ME4a LINE L1 -236 5885 5558 368 190 53 115 chr9 3847565 3847791 -138423653 + L2 LINE L2 2665 2876 -438 461 252 17 0 chr9 3847977 3848096 -138423348 + L2 LINE L2 3188 3308 -5 288 130 0 0 chr9 3848129 3848175 -138423269 + (T)n Simple_repeat Simple_repeat 1 46 0 283 286 75 20 chr9 3848410 3848557 -138422887 - L1ME1 LINE L1 -252 5914 5760 1063 175 14 28 chr9 3848918 3849129 -138422315 - MER3 DNA MER1_type -1 208 1 333 301 30 0 chr9 3849482 3849615 -138421829 - L1ME4a LINE L1 -218 5903 5767 262 179 0 71 chr9 3849699 3849755 -138421689 + AluJb SINE Alu 75 126 -176 23 54 0 0 chr9 3849955 3849992 -138421452 + AT_rich Low_complexity Low_complexity 1 37 0 386 196 82 10 chr9 3850853 3850950 -138420494 - MSTB LTR MaLR 0 426 323 19182 90 6 4 chr9 3850950 3853584 -138417860 + L1P LINE L1 31 2669 -3477 2038 163 70 0 chr9 3854444 3854813 -138416631 + MER57A LTR ERV1 8 402 -1 283 355 58 25 chr9 3854906 3855027 -138416417 - L2 LINE L2 0 3272 3148 491 271 79 22 chr9 3856214 3856443 -138415001 - L1MEd LINE L1 -4877 1242 1001 319 262 75 97 chr9 3856447 3856726 -138414718 - L1MEd LINE L1 -5161 958 686 317 343 36 29 chr9 3857694 3857834 -138413610 + MIR3 SINE MIR 2 142 -66 180 125 0 0 chr9 3857892 3857924 -138413520 + (A)n Simple_repeat Simple_repeat 1 32 0 402 332 111 5 chr9 3858924 3859141 -138412303 + MIR SINE MIR 10 249 -13 1108 257 49 18 chr9 3859261 3859713 -138411731 + L1M4 LINE L1 4247 4712 -1434 2040 86 0 0 chr9 3859713 3859969 -138411475 + AluY SINE Alu 37 292 -19 652 226 12 54 chr9 3861002 3861170 -138410274 - MER105 DNA DNA -42 162 2 339 182 0 0 chr9 3861808 3861863 -138409581 - Alu SINE Alu -244 56 2 621 296 62 33 chr9 3863117 3863357 -138408087 - MIR SINE MIR -14 248 2 402 299 52 52 chr9 3863863 3864057 -138407387 + L2 LINE L2 3120 3313 0 2272 98 0 3 chr9 3864116 3864411 -138407033 + AluSx SINE Alu 2 295 -17 511 326 80 46 chr9 3864411 3864801 -138406643 - L2 LINE L2 -21 3292 2890 1307 161 0 58 chr9 3864803 3865045 -138406399 + AluJo SINE Alu 85 312 0 1024 312 42 51 chr9 3865060 3865682 -138405762 - L2 LINE L2 -429 2885 2270 1850 258 43 11 chr9 3866272 3866998 -138404446 + L1MC/D LINE L1 3268 4016 -2130 829 187 0 20 chr9 3867003 3867153 -138404291 + AluJo SINE Alu 1 147 -165 186 43 0 0 chr9 3867177 3867200 -138404244 + (TAA)n Simple_repeat Simple_repeat 2 24 0 3273 235 67 17 chr9 3867204 3868546 -138402898 + L1MC/D LINE L1 4028 5434 -743 492 175 42 8 chr9 3868994 3869114 -138402330 - L1MA5 LINE L1 -29 6271 6148 319 338 80 0 chr9 3869207 3869358 -138402086 - MIR SINE MIR -1 261 99 258 32 0 0 chr9 3869513 3869544 -138401900 + (CA)n Simple_repeat Simple_repeat 2 32 0 208 170 57 0 chr9 3870016 3870069 -138401375 + (TAAA)n Simple_repeat Simple_repeat 2 57 0 288 226 16 0 chr9 3870095 3870157 -138401287 - MER2 DNA MER2_type 0 345 283 382 216 11 0 chr9 3870170 3870259 -138401185 - MER2 DNA MER2_type -150 89 1 3436 85 11 60 chr9 3870992 3871559 -138399885 - LTR10B LTR ERV1 0 547 9 26 64 0 0 chr9 3871663 3871710 -138399734 + AT_rich Low_complexity Low_complexity 1 47 0 25 31 0 0 chr9 3871761 3871793 -138399651 + AT_rich Low_complexity Low_complexity 1 32 0 275 263 246 0 chr9 3871957 3872071 -138399373 - L2 LINE L2 -4 3309 3168 500 313 74 16 chr9 3872554 3872797 -138398647 - MIR SINE MIR 0 262 6 2284 89 0 3 chr9 3872915 3873217 -138398227 - AluSx SINE Alu -10 302 2 1905 116 0 0 chr9 3874120 3874378 -138397066 - AluSc SINE Alu -17 292 35 2648 121 16 14 chr9 3875519 3875951 -138395493 + L1MA5A LINE L1 5852 6287 -10 1752 130 54 7 chr9 3875951 3876227 -138395217 - AluSg SINE Alu -21 289 1 2648 121 16 14 chr9 3876227 3876239 -138395205 + L1MA5A LINE L1 6287 6297 0 419 347 40 22 chr9 3876597 3876822 -138394622 + L2 LINE L2 2071 2299 -1015 258 331 90 34 chr9 3876947 3877084 -138394360 + MIR SINE MIR 20 171 -91 2398 75 0 31 chr9 3877084 3877402 -138394042 + AluY SINE Alu 1 308 -3 258 331 90 34 chr9 3877402 3877442 -138394002 + MIR SINE MIR 171 207 -55 603 212 71 88 chr9 3877592 3877759 -138393685 + L1MC3 LINE L1 6886 7045 -740 180 77 0 0 chr9 3877759 3877785 -138393659 + (TAAA)n Simple_repeat Simple_repeat 1 26 0 603 212 71 88 chr9 3877785 3877956 -138393488 + L1MC3 LINE L1 7045 7218 -567 568 185 34 0 chr9 3877998 3878117 -138393327 + L1MC3 LINE L1 5857 5979 -1806 1032 171 0 30 chr9 3878117 3878316 -138393128 + L1MC3 LINE L1 7307 7499 -286 1857 163 32 29 chr9 3878326 3878882 -138392562 + MLT2A2 LTR ERVL 1 554 0 965 159 3 103 chr9 3878883 3879173 -138392271 + L1MC3 LINE L1 7507 7767 -18 2151 30 0 0 chr9 3880964 3881232 -138390212 - L1PA4 LINE L1 -173 5982 5715 1277 65 0 0 chr9 3881232 3881392 -138390052 + L1PA4 LINE L1 5986 6153 -2 2728 219 22 16 chr9 3881553 3881846 -138389598 - MER82 DNA MER2_type -5 648 358 2518 78 0 3 chr9 3881846 3882153 -138389291 + AluSq SINE Alu 3 308 -5 2728 219 22 16 chr9 3882153 3882499 -138388945 - MER82 DNA MER2_type -295 358 5 3308 158 18 1 chr9 3882553 3883248 -138388196 + L1P4 LINE L1 4739 5441 -727 3656 206 60 13 chr9 3883356 3885261 -138386183 - L1MC2 LINE L1 -296 6048 4046 2392 90 3 7 chr9 3885854 3886164 -138385280 - AluSq SINE Alu -4 309 1 2110 117 0 7 chr9 3886893 3887203 -138384241 + AluSg SINE Alu 1 308 0 232 262 19 0 chr9 3888507 3888610 -138382834 + GA-rich Low_complexity Low_complexity 2 106 0 382 304 249 33 chr9 3889293 3890439 -138381005 - L2 LINE L2 -189 3083 1684 1005 195 0 16 chr9 3890489 3890674 -138380770 + AluJo SINE Alu 123 304 -8 369 272 97 9 chr9 3893138 3893252 -138378192 - L2 LINE L2 -3 3310 3187 243 277 36 18 chr9 3893967 3894079 -138377365 + L1ME4a LINE L1 5966 6079 -42 192 40 0 0 chr9 3895376 3895401 -138376043 + (TTTTC)n Simple_repeat Simple_repeat 1 25 0 215 345 0 0 chr9 3896061 3896119 -138375325 + MIR SINE MIR 194 251 -11 1820 149 22 0 chr9 3896763 3897070 -138374374 + AluSx SINE Alu 2 314 0 1393 183 10 11 chr9 3897104 3897415 -138374029 + MLT1A1 LTR MaLR 1 358 -7 2736 3 0 0 chr9 3898301 3898619 -138372825 + L1PA2 LINE L1 5689 6006 -149 2566 56 0 0 chr9 3899157 3899459 -138371985 + AluY SINE Alu 1 302 -9 296 167 33 0 chr9 3899708 3899726 -138371718 - AluS SINE Alu -246 62 46 1672 107 9 0 chr9 3899726 3899951 -138371493 - AluSg/x SINE Alu -12 298 72 296 167 33 0 chr9 3899951 3899992 -138371452 - AluS SINE Alu -262 46 1 2203 135 125 2 chr9 3900429 3900971 -138370473 - MER39B LTR ERV1 0 653 1 2779 135 107 13 chr9 3901336 3901821 -138369623 - LTR24C LTR ERV1 -29 606 61 2136 142 3 0 chr9 3901821 3902131 -138369313 - AluSx SINE Alu -1 311 1 2779 135 107 13 chr9 3902131 3902199 -138369245 - LTR24C LTR ERV1 -574 61 1 506 203 152 7 chr9 3902281 3902419 -138369025 + MER5A DNA MER1_type 26 183 -6 262 44 22 22 chr9 3902605 3902650 -138368794 + (TTTG)n Simple_repeat Simple_repeat 3 47 0 233 331 164 28 chr9 3902840 3903127 -138368317 + L2 LINE L2 1125 1450 -1864 923 190 11 6 chr9 3903224 3903398 -138368046 - Tigger2 DNA MER2_type -2 2716 2542 320 134 0 0 chr9 3903477 3903544 -138367900 - Tigger2 DNA MER2_type -177 2541 2475 1955 139 0 0 chr9 3903545 3903812 -138367632 + AluSx SINE Alu 1 267 -45 1725 188 16 10 chr9 3903954 3904263 -138367181 + AluJb SINE Alu 1 311 -1 798 277 84 20 chr9 3904263 3904610 -138366834 - L1MCb LINE L1 -5104 941 573 1598 264 31 30 chr9 3904702 3905278 -138366166 - L1MCb LINE L1 -5467 578 2 2263 106 0 0 chr9 3905306 3905608 -138365836 - AluSx SINE Alu -10 302 1 209 405 0 17 chr9 3905645 3905761 -138365683 + L2 LINE L2 3154 3267 -5 202 160 40 0 chr9 3905766 3905816 -138365628 + (TGGA)n Simple_repeat Simple_repeat 3 54 0 186 71 48 24 chr9 3906313 3906355 -138365089 + (TA)n Simple_repeat Simple_repeat 1 43 0 2137 110 17 0 chr9 3906433 3906732 -138364712 + AluSx SINE Alu 3 306 -6 895 284 92 57 chr9 3906921 3907562 -138363882 - L2 LINE L2 -82 3231 2560 324 175 21 62 chr9 3910098 3910195 -138361249 - MER34B LTR ERV1 0 565 473 273 228 22 22 chr9 3910172 3910264 -138361180 - LTR48 LTR ERV1 -65 722 631 * 2107 142 0 0 chr9 3910269 3910578 -138360866 + AluSx SINE Alu 1 309 -3 1256 161 161 20 chr9 3911258 3911512 -138359932 + AluJo SINE Alu 1 290 -12 743 246 68 50 chr9 3913227 3913447 -138357997 + LTR33 LTR ERVL 1 224 -297 544 255 101 27 chr9 3913475 3913663 -138357781 + LTR33 LTR ERVL 312 513 -8 2208 142 31 29 chr9 3913694 3914075 -138357369 - MLT1B LTR MaLR -8 382 1 262 304 108 0 chr9 3914400 3914520 -138356924 + MLT1J LTR MaLR 38 131 -315 600 290 94 27 chr9 3914771 3914995 -138356449 - MIR SINE MIR -21 241 3 27969 33 3 1 chr9 3915074 3919274 -138352170 - L1PA4 LINE L1 -3 6152 1945 3414 234 95 26 chr9 3920318 3922164 -138349280 - L1ME1 LINE L1 -5 6161 4178 364 262 24 36 chr9 3922290 3922458 -138348986 - HAL1b LINE L1 -435 913 748 * 622 303 101 21 chr9 3922440 3922777 -138348667 + L1MEd LINE L1 6 369 -5750 497 171 0 0 chr9 3923183 3923259 -138348185 + AluJ/FLAM SINE Alu 6 81 -231 382 93 0 0 chr9 3923338 3923392 -138348052 + Alu SINE Alu 243 296 -6 182 333 56 0 chr9 3924139 3924229 -138347215 + MIR SINE MIR 49 143 -119 1963 117 4 0 chr9 3924461 3924734 -138346710 - AluSx SINE Alu 0 312 39 22 35 0 0 chr9 3924825 3924854 -138346590 + AT_rich Low_complexity Low_complexity 1 29 0 436 123 74 164 chr9 3925100 3925222 -138346222 + FRAM SINE Alu 49 159 -17 586 249 117 10 chr9 3925518 3925715 -138345729 - MIR SINE MIR 0 262 45 2091 137 0 0 chr9 3925777 3926070 -138345374 + AluY SINE Alu 1 293 -18 1492 130 0 5 chr9 3926316 3926532 -138344912 + AluSg/x SINE Alu 88 302 -10 509 379 86 19 chr9 3926545 3927078 -138344366 + L2 LINE L2 2268 2836 -478 272 368 40 0 chr9 3927497 3927622 -138343822 + L2 LINE L2 2907 3036 -236 684 325 51 0 chr9 3927632 3927869 -138343575 - MIR SINE MIR -3 259 11 2136 133 0 0 chr9 3928079 3928381 -138343063 + AluSg SINE Alu 1 302 -8 296 217 36 12 chr9 3929762 3929845 -138341599 + MLT1J1 LTR MaLR 360 444 -2 1428 167 0 0 chr9 3930279 3930495 -138340949 + AluJb SINE Alu 72 287 -25 32 0 0 0 chr9 3930885 3930917 -138340527 + AT_rich Low_complexity Low_complexity 1 32 0 1643 126 84 11 chr9 3930917 3931179 -138340265 - AluSx SINE Alu -31 281 1 520 265 90 90 chr9 3932305 3932716 -138338728 + MLT1J LTR MaLR 1 411 -100 502 254 24 102 chr9 3932921 3933126 -138338318 + MIR SINE MIR 20 208 -54 252 0 0 0 chr9 3933151 3933179 -138338265 + (CA)n Simple_repeat Simple_repeat 2 29 0 297 315 130 0 chr9 3933250 3933396 -138338048 + MIR3 SINE MIR 33 197 -11 313 281 30 85 chr9 3933430 3933582 -138337862 + L1ME3A LINE L1 5968 6108 -62 1731 204 66 75 chr9 3933582 3934141 -138337303 - MLT2B3 LTR ERVL 0 554 1 313 281 30 85 chr9 3934141 3934187 -138337257 + L1ME3A LINE L1 6108 6155 -15 2366 82 3 0 chr9 3934261 3934565 -138336879 + AluSg SINE Alu 1 305 -5 499 157 104 17 chr9 3934916 3935031 -138336413 - L1MC2 LINE L1 0 6344 6220 31403 108 10 59 chr9 3935211 3941660 -138329784 - L1PA7 LINE L1 -15 6139 12 1143 138 5 0 chr9 3941670 3941859 -138329585 - L1MC2 LINE L1 -108 6236 6047 6759 129 24 57 chr9 3941872 3942361 -138329083 - Tigger3b DNA MER2_type -1823 1205 701 1941 124 0 37 chr9 3942361 3942660 -138328784 + AluJb SINE Alu 1 288 -24 6759 129 24 57 chr9 3942660 3943416 -138328028 - Tigger3b DNA MER2_type -2327 701 1 1702 149 63 23 chr9 3943436 3943785 -138327659 - L1MC2 LINE L1 -339 6005 5643 2223 113 3 0 chr9 3943954 3944256 -138327188 + AluSg SINE Alu 1 303 -7 2244 98 0 7 chr9 3944602 3944899 -138326545 + AluSx SINE Alu 3 297 -15 366 345 91 0 chr9 3945503 3945668 -138325776 + MIR SINE MIR 49 228 -34 276 345 78 0 chr9 3945701 3945843 -138325601 + MIR SINE MIR 85 237 -25 770 177 0 0 chr9 3946862 3946986 -138324458 + AluSg/x SINE Alu 170 293 -19 846 237 71 0 chr9 3947511 3947709 -138323735 + MER58C DNA MER1_type 4 215 0 273 242 44 77 chr9 3948459 3948550 -138322894 + MER102b DNA MER1_type 254 341 0 4174 122 10 57 chr9 3948572 3949345 -138322099 + L1MB3 LINE L1 5440 6176 -7 193 333 0 0 chr9 3949400 3949448 -138321996 + MIR SINE MIR 49 96 -166 335 364 120 16 chr9 3949644 3950104 -138321340 - L2 LINE L2 -221 3051 2550 313 335 29 41 chr9 3950180 3950350 -138321094 + L2 LINE L2 2201 2368 -946 181 305 183 37 chr9 3950688 3950791 -138320653 + MIR SINE MIR 60 147 -115 533 247 114 6 chr9 3950791 3950949 -138320495 + MER5B DNA MER1_type 1 175 -3 181 305 183 37 chr9 3950949 3951009 -138320435 + MIR SINE MIR 147 247 -15 * 570 284 111 0 chr9 3951004 3951212 -138320232 - MIR SINE MIR 0 262 32 525 312 74 39 chr9 3953149 3953551 -138317893 - L2 LINE L2 -205 3108 2682 356 270 26 59 chr9 3953865 3954017 -138317427 + L1M4 LINE L1 3843 3989 -2157 1059 135 30 110 chr9 3954357 3954594 -138316850 - MER20 DNA MER1_type 0 219 2 1086 238 45 79 chr9 3954696 3955100 -138316344 - MLT1B LTR MaLR 0 390 1 377 328 65 14 chr9 3955239 3955809 -138315635 + L1M4 LINE L1 4151 4793 -1353 2418 67 0 3 chr9 3956020 3956320 -138315124 - AluY SINE Alu -12 299 1 336 325 33 8 chr9 3956429 3956549 -138314895 - L2 LINE L2 -703 2611 2489 3474 217 117 45 chr9 3956570 3957713 -138313731 - MER69B DNA AcHobo -1 1225 1 201 300 0 0 chr9 3957716 3957766 -138313678 - L2 LINE L2 -833 2481 2432 2689 218 65 37 chr9 3957840 3958616 -138312828 + L1MDb LINE L1 457 1389 -5020 1770 152 0 7 chr9 3958698 3958968 -138312476 + AluJb SINE Alu 1 268 -44 214 75 75 0 chr9 3959016 3959056 -138312388 + A-rich Low_complexity Low_complexity 6 48 0 2419 152 43 10 chr9 3959082 3959496 -138311948 + MSTA LTR MaLR 1 428 0 633 157 9 0 chr9 3959496 3959604 -138311840 + MSTA-int LTR MaLR 1 109 -1542 1581 156 0 8 chr9 3959604 3959848 -138311596 + MSTB LTR MaLR 185 426 0 1453 242 63 0 chr9 3959848 3960278 -138311166 + L1MDb LINE L1 1503 1959 -4447 889 189 0 0 chr9 3960281 3960434 -138311010 + FRAM SINE Alu 14 166 -10 2969 236 71 10 chr9 3960540 3961787 -138309657 + L1MDb LINE L1 2072 3379 -3027 2212 299 105 66 chr9 3961813 3963073 -138308371 + L2 LINE L2 984 2320 -994 1599 190 58 0 chr9 3963073 3963368 -138308076 + AluJb SINE Alu 1 312 0 2212 299 105 66 chr9 3963368 3963691 -138307753 + L2 LINE L2 2320 2629 -685 494 337 7 95 chr9 3964321 3964615 -138306829 + L3 LINE CR1 110 377 -1200 480 299 184 0 chr9 3964638 3964855 -138306589 - MIR SINE MIR 0 262 6 324 383 54 9 chr9 3964934 3965156 -138306288 + L3 LINE CR1 483 714 -863 2330 121 57 45 chr9 3965165 3965534 -138305910 + MSTA LTR MaLR 1 377 -51 1733 163 144 21 chr9 3965534 3965915 -138305529 + MSTA LTR MaLR 1 428 0 2330 121 57 45 chr9 3965915 3965968 -138305476 + MSTA LTR MaLR 377 428 0 187 239 137 34 chr9 3965968 3966085 -138305359 + L3 LINE CR1 724 852 -725 4858 28 11 0 chr9 3966091 3966663 -138304781 + L1PA4 LINE L1 5575 6152 -3 36 53 0 0 chr9 3967155 3967212 -138304232 + AT_rich Low_complexity Low_complexity 1 57 0 644 264 115 19 chr9 3967405 3967666 -138303778 + L3 LINE CR1 936 1221 -356 732 318 61 0 chr9 3967751 3967965 -138303479 + MIR SINE MIR 3 229 -33 2087 142 33 28 chr9 3968290 3968650 -138302794 + THE1B LTR MaLR 3 364 0 300 215 51 13 chr9 3969084 3969163 -138302281 - L1MDb LINE L1 -5440 969 888 1056 308 99 62 chr9 3969170 3969654 -138301790 - L2 LINE L2 -6 3307 2842 1678 178 45 0 chr9 3969654 3969940 -138301504 + AluJb SINE Alu 1 299 -13 1056 308 99 62 chr9 3969940 3970288 -138301156 - L2 LINE L2 -471 2842 2508 2490 63 0 0 chr9 3970288 3970587 -138300857 + AluY SINE Alu 1 299 -12 1056 308 99 62 chr9 3970587 3970958 -138300486 - L2 LINE L2 -805 2508 2058 330 302 213 0 chr9 3971189 3971358 -138300086 - L2 LINE L2 -1320 1994 1790 282 359 34 17 chr9 3971722 3971839 -138299605 - MIR3 SINE MIR -54 154 36 2459 63 7 3 chr9 3971945 3972248 -138299196 + AluY SINE Alu 1 304 -7 640 343 30 18 chr9 3972492 3972827 -138298617 + HERVL LTR ERVL 3569 3907 -1747 2037 146 21 29 chr9 3972827 3973205 -138298239 - THE1C LTR MaLR 0 375 1 1478 381 34 5 chr9 3973437 3974403 -138297041 + HERVL LTR ERVL 3962 4955 -699 613 263 120 31 chr9 3974814 3975068 -138296376 + LTR16A LTR ERVL 3 282 -175 813 196 0 0 chr9 3975070 3975213 -138296231 - FLAM_C SINE Alu 0 143 1 5211 175 90 0 chr9 3975580 3976516 -138294928 + LTR28 LTR ERV1 1 1020 0 23 33 0 0 chr9 3976531 3976561 -138294883 + AT_rich Low_complexity Low_complexity 1 30 0 507 165 31 0 chr9 3976809 3976906 -138294538 - L1M4 LINE L1 -539 5645 5546 210 91 0 0 chr9 3977377 3977410 -138294034 + (T)n Simple_repeat Simple_repeat 1 33 0 204 297 0 31 chr9 3978298 3978362 -138293082 - MER5A DNA MER1_type 0 189 128 25 0 0 0 chr9 3978392 3978417 -138293027 + AT_rich Low_complexity Low_complexity 1 25 0 258 240 8 104 chr9 3978624 3978749 -138292695 - L1MC/D LINE L1 -1921 5887 5775 390 293 24 16 chr9 3978760 3978883 -138292561 + MER5A DNA MER1_type 44 167 -22 404 316 26 52 chr9 3980164 3980319 -138291125 - MIR3 SINE MIR -48 160 10 220 238 0 32 chr9 3981041 3981104 -138290340 + (CATATA)n Simple_repeat Simple_repeat 5 65 0 326 146 12 61 chr9 3982519 3982601 -138288843 - HAL1 LINE L1 0 2507 2430 4433 97 11 32 chr9 3982692 3983354 -138288090 - MER39B LTR ERV1 -1 652 5 255 291 6 55 chr9 3983400 3983565 -138287879 - L1MC5 LINE L1 -33 7928 7772 2034 252 68 43 chr9 3983584 3983869 -138287575 - L1ME3A LINE L1 -13 6157 5881 2490 87 3 0 chr9 3983869 3984181 -138287263 - AluSp SINE Alu 0 313 1 2034 252 68 43 chr9 3984181 3985519 -138285925 - L1ME3A LINE L1 -289 5881 4484 247 316 51 17 chr9 3985743 3985920 -138285524 - HAL1 LINE L1 -1198 1309 1127 243 0 0 0 chr9 3985935 3985962 -138285482 + (TA)n Simple_repeat Simple_repeat 2 28 0 5945 115 7 3 chr9 3985962 3987308 -138284136 - L1PA15 LINE L1 -10 7574 6223 4417 201 18 10 chr9 3987310 3988333 -138283111 - L1PA15 LINE L1 -1435 6130 5100 545 202 23 55 chr9 3988315 3988533 -138282911 - HAL1 LINE L1 -1341 1166 956 * 566 137 0 0 chr9 3988538 3988640 -138282804 - L1MA8 LINE L1 -7 6284 6183 787 277 68 10 chr9 3988665 3989077 -138282367 - L1ME3A LINE L1 -1678 4468 4033 1093 159 0 23 chr9 3989081 3989257 -138282187 - AluJb SINE Alu -140 172 1 16913 148 68 5 chr9 3989257 3990662 -138280782 - L1PA15 LINE L1 -4385 3180 1865 204 40 0 0 chr9 3990662 3990687 -138280757 + (TCTCCC)n Simple_repeat Simple_repeat 1 25 0 16913 148 68 5 chr9 3990687 3992263 -138279181 - L1PA15 LINE L1 -5700 1865 11 17218 140 18 10 chr9 3992359 3995642 -138275802 - L1PA11 LINE L1 -2 7610 4286 2264 99 3 10 chr9 3995642 3995946 -138275498 - AluSg SINE Alu -8 302 1 17218 140 18 10 chr9 3995946 3996660 -138274784 - L1PA11 LINE L1 -3326 4286 3579 28613 120 11 57 chr9 3996673 4002708 -138268736 - L1PA7 LINE L1 -15 6139 426 219 36 0 0 chr9 4002708 4002736 -138268708 + (CAAA)n Simple_repeat Simple_repeat 2 29 0 28613 120 11 57 chr9 4002736 4003133 -138268311 - L1PA7 LINE L1 -5728 426 12 4722 239 25 37 chr9 4003144 4005668 -138265776 - L1PA11 LINE L1 -3999 3585 7 827 244 41 51 chr9 4005679 4006069 -138265375 - L1M4 LINE L1 -951 5195 4810 652 256 122 48 chr9 4006072 4006639 -138264805 - L1MDb LINE L1 -5024 1194 630 362 367 66 15 chr9 4006703 4006899 -138264545 - L1MDb LINE L1 -5831 565 360 961 273 60 78 chr9 4007926 4008513 -138262931 + MER77 LTR ERV1 54 602 -3 825 217 38 79 chr9 4008521 4008901 -138262543 + MLT1A1 LTR MaLR 1 422 -6 757 179 0 0 chr9 4009483 4009606 -138261838 + FLAM_A SINE Alu 2 124 -9 519 260 8 0 chr9 4009765 4009892 -138261552 + MLT1L LTR MaLR 430 557 -58 195 129 0 0 chr9 4010142 4010173 -138261271 + (T)n Simple_repeat Simple_repeat 1 31 0 2036 98 7 11 chr9 4010176 4010453 -138260991 - AluSx SINE Alu 0 312 37 387 316 193 30 chr9 4011455 4011724 -138259720 - L3 LINE CR1 -85 1492 1180 348 316 72 24 chr9 4011816 4012189 -138259255 + L1MC4 LINE L1 7098 7488 -554 381 203 127 0 chr9 4012359 4012477 -138258967 + L1ME4a LINE L1 5977 6109 -12 250 387 34 42 chr9 4012529 4012767 -138258677 - L3 LINE CR1 -400 1177 942 502 316 17 11 chr9 4012824 4012998 -138258446 + MIR SINE MIR 87 261 -1 380 248 46 9 chr9 4013996 4014105 -138257339 - MLT1L LTR MaLR -339 276 164 2313 86 14 0 chr9 4014360 4014651 -138256793 - AluSx SINE Alu -17 295 1 270 355 118 0 chr9 4015181 4015274 -138256170 + MIR SINE MIR 31 134 -74 298 324 88 99 chr9 4015300 4015766 -138255678 - L2 LINE L2 0 3272 2812 207 162 0 0 chr9 4016308 4016345 -138255099 + CT-rich Low_complexity Low_complexity 3 39 0 1681 235 54 7 chr9 4017190 4017595 -138253849 + MER45B DNA AcHobo 1 424 -616 5242 120 24 14 chr9 4017595 4018544 -138252900 + L1MA8 LINE L1 5195 6154 -137 5793 108 13 2 chr9 4018556 4019506 -138251938 - L1PA8 LINE L1 -758 5388 4429 6002 68 2 9 chr9 4019506 4020287 -138251157 + L1PA8 LINE L1 5388 6492 -209 2304 107 0 3 chr9 4020287 4020596 -138250848 + AluSc SINE Alu 1 308 -1 6002 68 2 9 chr9 4020596 4020805 -138250639 + L1PA8 LINE L1 6492 6701 0 2689 164 91 2 chr9 4020813 4021360 -138250084 + MER45B DNA AcHobo 411 1006 -34 1045 45 8 0 chr9 4021437 4021569 -138249875 - L1PA7 LINE L1 -4 6150 6018 384 109 0 0 chr9 4021569 4021624 -138249820 + MER45B DNA AcHobo 984 1038 -2 1687 178 16 3 chr9 4021774 4022134 -138249310 + L1PB4 LINE L1 5812 6175 0 184 234 0 64 chr9 4022275 4022322 -138249122 + L2 LINE L2 3213 3256 -16 871 269 98 52 chr9 4022633 4023094 -138248350 - MLT1J LTR MaLR -8 503 22 2097 120 3 3 chr9 4023338 4023639 -138247805 - AluSx SINE Alu -6 306 6 376 330 28 0 chr9 4023753 4023862 -138247582 - MER5A DNA MER1_type -10 179 68 342 0 0 0 chr9 4025938 4025976 -138245468 + (TA)n Simple_repeat Simple_repeat 2 39 0 225 277 0 0 chr9 4027564 4027629 -138243815 + MLT1K LTR MaLR 519 583 -5 183 309 79 63 chr9 4027780 4027906 -138243538 - MIR SINE MIR 0 262 135 256 282 70 0 chr9 4028272 4028343 -138243101 - MIR SINE MIR -79 129 54 696 225 22 0 chr9 4028389 4028527 -138242917 - MER5A DNA MER1_type -29 160 20 24 32 0 0 chr9 4029375 4029406 -138242038 + AT_rich Low_complexity Low_complexity 1 31 0 1585 150 132 6 chr9 4029739 4030072 -138241372 + THE1C LTR MaLR 1 375 0 200 343 159 17 chr9 4030381 4030553 -138240891 - MIR3 SINE MIR -64 198 4 12765 180 40 47 chr9 4030571 4032464 -138238980 - L1MA4A LINE L1 0 7365 5460 180 0 0 0 chr9 4032464 4032484 -138238960 + (TTTTA)n Simple_repeat Simple_repeat 3 22 0 12765 180 40 47 chr9 4032484 4035152 -138236292 - L1MA4A LINE L1 -1905 5460 2646 1319 102 11 0 chr9 4035152 4035329 -138236115 - AluSp SINE Alu -3 310 132 12765 180 40 47 chr9 4035329 4037251 -138234193 - L1MA4A LINE L1 -4719 2646 712 1840 274 72 31 chr9 4037640 4038349 -138233095 - L1MA4A LINE L1 -6471 738 1 182 340 0 0 chr9 4038628 4038681 -138232763 - L2 LINE L2 0 3313 3261 301 200 60 184 chr9 4038724 4038909 -138232535 - MER5B DNA MER1_type 0 178 17 341 0 0 43 chr9 4039126 4039172 -138232272 + (CATTA)n Simple_repeat Simple_repeat 4 47 0 213 154 0 0 chr9 4039193 4039232 -138232212 + (TG)n Simple_repeat Simple_repeat 1 39 0 260 269 0 0 chr9 4039384 4039436 -138232008 - MIR3 SINE MIR -34 174 123 231 167 0 0 chr9 4040029 4040071 -138231373 + (CTG)n Simple_repeat Simple_repeat 1 42 0 477 300 170 0 chr9 4040418 4040618 -138230826 + MIR SINE MIR 29 262 0 416 244 64 32 chr9 4041079 4041235 -138230209 - MLT1J LTR MaLR -23 488 328 2239 109 7 7 chr9 4041642 4041946 -138229498 - AluSc SINE Alu -5 304 1 31 26 0 0 chr9 4041979 4042017 -138229427 + AT_rich Low_complexity Low_complexity 1 38 0 250 316 0 0 chr9 4042107 4042183 -138229261 + L1ME LINE L1 176 251 -5954 517 330 100 45 chr9 4042479 4043058 -138228386 + L1ME LINE L1 567 1177 -5028 489 304 35 3 chr9 4043084 4043373 -138228071 + L1ME LINE L1 1259 1556 -4840 207 0 0 0 chr9 4043407 4043430 -138228014 + (CAAAAA)n Simple_repeat Simple_repeat 2 24 0 1639 268 151 20 chr9 4043515 4045012 -138226432 + L1ME LINE L1 2169 3825 -2390 303 259 259 26 chr9 4045060 4045249 -138226195 + L1ME LINE L1 3998 4230 -1985 1796 107 40 10 chr9 4045250 4045549 -138225895 + L1PB2 LINE L1 5722 6037 -114 728 280 83 34 chr9 4045547 4046101 -138225343 + L1ME LINE L1 4569 5149 -1066 * 349 299 75 7 chr9 4047127 4047274 -138224170 + MIR SINE MIR 105 261 -1 1946 97 19 58 chr9 4047410 4047573 -138223871 - AluSg1 SINE Alu -9 300 132 239 0 0 31 chr9 4047573 4047605 -138223839 + (TTTA)n Simple_repeat Simple_repeat 3 33 0 1946 97 19 58 chr9 4047605 4047621 -138223823 - AluSg1 SINE Alu -177 132 117 2604 33 0 0 chr9 4047621 4047925 -138223519 - AluYb8 SINE Alu -14 304 1 1946 97 19 58 chr9 4047925 4048055 -138223389 - AluSg1 SINE Alu -192 117 2 749 210 26 65 chr9 4048418 4048647 -138222797 + MER112 DNA MER1_type 1 220 -40 279 233 106 100 chr9 4049086 4049247 -138222197 - MIR SINE MIR -57 205 45 186 43 0 0 chr9 4049389 4049412 -138222032 + (TTG)n Simple_repeat Simple_repeat 2 24 0 1560 200 82 43 chr9 4051405 4051891 -138219553 - MLT1D LTR MaLR 0 505 1 465 250 22 71 chr9 4051983 4052167 -138219277 - MER5B DNA MER1_type -3 175 1 273 198 0 0 chr9 4054564 4054645 -138216799 + (CA)n Simple_repeat Simple_repeat 1 81 0 260 286 58 39 chr9 4054967 4055173 -138216271 + LTR16B LTR ERVL 4 213 -251 497 246 128 45 chr9 4057119 4057517 -138213927 - L1ME4a LINE L1 -4 6117 5687 1594 278 154 88 chr9 4058750 4059799 -138211645 - L2 LINE L2 0 3313 2334 204 40 0 0 chr9 4059799 4059824 -138211620 + (GGAGA)n Simple_repeat Simple_repeat 2 26 0 1594 278 154 88 chr9 4059824 4059961 -138211483 - L2 LINE L2 -979 2334 2207 553 234 16 0 chr9 4059961 4060085 -138211359 + MER94 DNA DNA 9 134 0 1594 278 154 88 chr9 4060085 4060516 -138210928 - L2 LINE L2 -1106 2207 1442 251 281 157 0 chr9 4060924 4061010 -138210434 + MIR SINE MIR 55 149 -59 2214 120 0 0 chr9 4061959 4062258 -138209186 - AluSx SINE Alu -13 299 1 295 337 61 0 chr9 4063418 4063516 -138207928 - L2 LINE L2 0 3272 3169 21 0 0 0 chr9 4063516 4063537 -138207907 + AT_rich Low_complexity Low_complexity 1 21 0 2745 74 21 5 chr9 4063537 4063915 -138207529 - L1PA10 LINE L1 0 6168 5785 215 271 0 0 chr9 4064125 4064184 -138207260 - L2 LINE L2 -298 2974 2916 2359 98 0 0 chr9 4064202 4064497 -138206947 + AluSg SINE Alu 1 295 -15 32 26 0 0 chr9 4064536 4064575 -138206869 + AT_rich Low_complexity Low_complexity 1 39 0 1056 183 18 22 chr9 4064699 4064928 -138206516 + MER96B DNA MER1_type? 190 417 0 208 167 0 0 chr9 4065382 4065418 -138206026 + L2 LINE L2 3273 3308 -5 2259 116 0 3 chr9 4066691 4067001 -138204443 - AluSx SINE Alu -3 309 1 2306 99 0 10 chr9 4067366 4067670 -138203774 - AluSq SINE Alu -12 301 1 2701 194 98 17 chr9 4068353 4068395 -138203049 + MER63C DNA MER1_type 11 48 -1012 267 31 0 0 chr9 4068395 4068427 -138203017 + (CA)n Simple_repeat Simple_repeat 2 33 0 2701 194 98 17 chr9 4068427 4069137 -138202307 + MER63C DNA MER1_type 48 824 -106 938 201 6 0 chr9 4069137 4069301 -138202143 - FRAM SINE Alu -7 169 5 415 234 21 0 chr9 4069305 4069399 -138202045 + MER63C DNA MER1_type 817 912 -18 297 279 77 93 chr9 4069460 4069707 -138201737 + MLT1J LTR MaLR 1 243 -268 382 182 130 71 chr9 4069753 4069907 -138201537 - MLT1J2 LTR MaLR -22 428 266 863 200 12 0 chr9 4070070 4070240 -138201204 - Tigger1 DNA MER2_type -2246 172 1 1327 190 0 4 chr9 4070337 4070563 -138200881 + AluJo SINE Alu 84 308 -4 1606 159 36 47 chr9 4071354 4071655 -138199789 + AluJb SINE Alu 1 298 -14 2405 80 7 0 chr9 4071839 4072140 -138199304 - AluSq SINE Alu -10 303 1 245 259 0 0 chr9 4072710 4072764 -138198680 + (TG)n Simple_repeat Simple_repeat 2 55 0 879 201 6 22 chr9 4072764 4072791 -138198653 - MER45A DNA AcHobo -1404 177 151 7613 27 0 0 chr9 4072791 4074186 -138197258 + L1PA4 LINE L1 4757 6152 -3 879 201 6 22 chr9 4074186 4074337 -138197107 - MER45A DNA AcHobo -1430 151 2 344 306 27 55 chr9 4074524 4074707 -138196737 + MIR SINE MIR 56 233 -29 21 36 0 0 chr9 4075552 4075580 -138195864 + AT_rich Low_complexity Low_complexity 1 28 0 407 316 21 16 chr9 4076937 4077124 -138194320 + MER117 DNA MER1_type 10 197 0 221 277 121 48 chr9 4077274 4077440 -138194004 - MIR SINE MIR 0 262 85 284 102 20 0 chr9 4080527 4080576 -138190868 + (TCTA)n Simple_repeat Simple_repeat 4 53 0 998 216 50 0 chr9 4081073 4081295 -138190149 - MIR SINE MIR -8 254 22 185 387 40 0 chr9 4081334 4081409 -138190035 - L3 LINE CR1 -92 1485 1408 685 269 97 36 chr9 4081508 4081898 -138189546 - LTR16C LTR ERVL -18 473 60 980 175 6 0 chr9 4082033 4082199 -138189245 + MER5A DNA MER1_type 1 167 -22 567 275 86 57 chr9 4082389 4082796 -138188648 - MLT1J LTR MaLR -23 488 70 2357 93 0 0 chr9 4084082 4084383 -138187061 + AluY SINE Alu 1 301 -10 735 272 68 36 chr9 4084852 4085102 -138186342 + MIR SINE MIR 4 261 -1 275 292 358 0 chr9 4085277 4085414 -138186030 - MER5A DNA MER1_type 0 189 4 291 306 150 25 chr9 4085427 4085587 -138185857 + MIR SINE MIR 53 232 -30 1807 127 33 7 chr9 4085682 4086019 -138185425 + AluSx SINE Alu 1 344 0 1150 224 37 104 chr9 4086268 4086644 -138184800 + L1MEc LINE L1 36 373 -6023 2185 92 3 10 chr9 4086644 4086948 -138184496 + AluSx SINE Alu 1 302 -10 1150 224 37 104 chr9 4086948 4087061 -138184383 + L1MEc LINE L1 373 492 -5904 910 228 0 0 chr9 4087062 4087220 -138184224 + FRAM SINE Alu 1 157 -19 1920 216 145 8 chr9 4087252 4087899 -138183545 + L1MEc LINE L1 518 1253 -5143 1459 216 62 55 chr9 4087900 4087979 -138183465 + L1MEc LINE L1 1759 1836 -4560 1869 176 3 6 chr9 4087979 4088292 -138183152 - AluJb SINE Alu 0 312 1 1459 216 62 55 chr9 4088292 4088444 -138183000 + L1MEc LINE L1 1836 1985 -4411 1884 185 0 6 chr9 4088444 4088758 -138182686 - AluJo SINE Alu 0 312 1 1459 216 62 55 chr9 4088758 4089090 -138182354 + L1MEc LINE L1 1985 2327 -4069 * 3397 231 57 65 chr9 4089088 4090436 -138181008 + L1MEc LINE L1 2966 4297 -1918 1657 105 24 0 chr9 4090436 4090684 -138180760 + L1PA10 LINE L1 5915 6168 0 3397 231 57 65 chr9 4090684 4091048 -138180396 + L1MEc LINE L1 4297 4663 -1552 18766 157 46 25 chr9 4091054 4097904 -138173540 + L1M1 LINE L1 18 7008 -713 288 0 0 0 chr9 4098199 4098231 -138173213 + (A)n Simple_repeat Simple_repeat 1 32 0 1438 243 130 18 chr9 4098611 4099258 -138172186 + L2 LINE L2 2565 3311 -2 214 167 0 0 chr9 4099738 4099774 -138171670 + (TTTG)n Simple_repeat Simple_repeat 2 37 0 31 58 0 0 chr9 4099937 4099989 -138171455 + AT_rich Low_complexity Low_complexity 1 52 0 643 277 116 55 chr9 4100085 4100811 -138170633 - L1MC4 LINE L1 -143 7899 7130 351 44 0 0 chr9 4100813 4100858 -138170586 + (TG)n Simple_repeat Simple_repeat 2 46 0 878 248 28 88 chr9 4101007 4101249 -138170195 - L1MC4 LINE L1 -981 7061 6849 2179 118 7 0 chr9 4101249 4101538 -138169906 - AluSx SINE Alu -21 291 1 878 248 28 88 chr9 4101538 4101682 -138169762 - L1MC4 LINE L1 -1193 6849 6698 206 229 147 83 chr9 4101922 4102031 -138169413 - MIR SINE MIR -70 138 23 5332 156 14 6 chr9 4102106 4103801 -138167643 + L1PA15 LINE L1 4309 6164 -1 963 177 23 0 chr9 4103938 4104113 -138167331 + MER5A DNA MER1_type 8 186 -3 227 313 31 0 chr9 4104564 4104628 -138166816 + MIR SINE MIR 119 184 -78 310 344 81 12 chr9 4105153 4105400 -138166044 + L2 LINE L2 2199 2462 -852 319 220 11 33 chr9 4105591 4105682 -138165762 - MIR SINE MIR -1 261 173 217 345 116 34 chr9 4105646 4105998 -138165446 + L2 LINE L2 2672 3059 -213 * 383 354 186 11 chr9 4106251 4106632 -138164812 - L2 LINE L2 0 3272 2825 1866 164 7 0 chr9 4106977 4107287 -138164157 + AluSx SINE Alu 1 312 0 3022 179 59 14 chr9 4107397 4108045 -138163399 + L1MB5 LINE L1 5492 6168 -6 6344 61 2 24 chr9 4108130 4109522 -138161922 + L1PA7 LINE L1 4774 6134 -20 285 29 0 0 chr9 4109522 4109556 -138161888 + (TG)n Simple_repeat Simple_repeat 2 35 0 366 325 43 11 chr9 4109564 4109752 -138161692 + L1M4 LINE L1 4260 4453 -1693 23 33 0 0 chr9 4110164 4110194 -138161250 + AT_rich Low_complexity Low_complexity 1 30 0 1384 74 0 23 chr9 4110217 4110393 -138161051 + AluY SINE Alu 1 172 -139 22 35 0 0 chr9 4111079 4111108 -138160336 + AT_rich Low_complexity Low_complexity 1 29 0 2570 49 0 0 chr9 4112009 4112315 -138159129 - AluY SINE Alu -5 306 1 306 206 31 19 chr9 4112390 4112488 -138158956 - L1ME LINE L1 -355 5766 5668 2469 62 0 13 chr9 4112488 4112793 -138158651 - AluY SINE Alu -10 301 1 306 206 31 19 chr9 4112793 4112826 -138158618 - L1ME LINE L1 -453 5668 5637 2474 55 3 3 chr9 4112976 4113286 -138158158 - AluY SINE Alu -1 310 1 446 194 21 11 chr9 4113542 4113635 -138157809 + MER20 DNA MER1_type 1 94 -125 447 123 14 0 chr9 4114448 4114521 -138156923 + AluS SINE Alu 1 74 -239 2233 66 3 35 chr9 4114660 4114978 -138156466 + AluY SINE Alu 1 308 -3 4008 191 52 27 chr9 4114992 4116623 -138154821 - L1MB2 LINE L1 -18 6153 4565 208 69 0 0 chr9 4116630 4116659 -138154785 + (TTTTG)n Simple_repeat Simple_repeat 4 80 0 2032 127 0 10 chr9 4116659 4116942 -138154502 - AluJb SINE Alu -6 306 1 4008 191 52 27 chr9 4116942 4117316 -138154128 - L1MB2 LINE L1 -1606 4565 4104 2373 55 3 35 chr9 4117316 4117626 -138153818 + AluY SINE Alu 1 300 -11 4008 191 52 27 chr9 4117626 4117656 -138153788 - L1MB2 LINE L1 -2067 4104 4076 35931 55 7 2 chr9 4117665 4123279 -138148165 - L1PA5 LINE L1 0 6154 511 347 62 31 31 chr9 4123381 4123445 -138147999 + Alu SINE Alu 237 300 -1 4130 207 127 36 chr9 4123459 4124160 -138147284 + L1MCb LINE L1 636 1272 -5292 2520 46 0 7 chr9 4124160 4124464 -138146980 - AluY SINE Alu -9 302 1 4130 207 127 36 chr9 4124464 4125525 -138145919 + L1MCb LINE L1 1272 2236 -4328 7265 47 5 0 chr9 4125525 4126586 -138144858 + L1PA5 LINE L1 5094 6151 -3 4130 207 127 36 chr9 4126586 4127361 -138144083 + L1MCb LINE L1 2236 3351 -3213 1239 246 47 0 chr9 4127369 4127756 -138143688 + L1MCb LINE L1 3908 4312 -2252 334 131 0 0 chr9 4127762 4127823 -138143621 + L1MC2 LINE L1 6274 6334 -10 2497 244 29 33 chr9 4127828 4128826 -138142618 + L1M4 LINE L1 2490 3483 -2663 1659 160 19 0 chr9 4129049 4129318 -138142126 - AluSx SINE Alu -38 274 1 313 343 56 9 chr9 4129977 4130085 -138141359 - MIR3 SINE MIR -93 115 3 1498 196 31 10 chr9 4130332 4130623 -138140821 - AluJo SINE Alu -15 297 1 360 298 158 35 chr9 4131161 4131332 -138140112 + MIR3 SINE MIR 3 194 -14 1691 195 36 28 chr9 4131555 4131944 -138139500 - MSTD LTR MaLR -4 392 1 4248 127 46 29 chr9 4133709 4135062 -138136382 + pTR5 LTR ERV1 738 2438 0 364 267 59 0 chr9 4135203 4135304 -138136140 - MIR3 SINE MIR -15 193 87 2343 87 23 0 chr9 4135644 4135944 -138135500 - AluSq SINE Alu -6 307 1 243 88 0 0 chr9 4136572 4136606 -138134838 + (TG)n Simple_repeat Simple_repeat 2 35 0 617 309 168 23 chr9 4136964 4137362 -138134082 + L3 LINE CR1 1101 1556 -21 780 286 61 12 chr9 4137648 4138087 -138133357 - MLT1J LTR MaLR -23 488 7 22 35 0 0 chr9 4138262 4138291 -138133153 + AT_rich Low_complexity Low_complexity 1 29 0 282 338 135 24 chr9 4139007 4139214 -138132230 - MIR SINE MIR -16 246 17 246 183 9 148 chr9 4139398 4139454 -138131990 - MLT1L LTR MaLR -6 609 575 1147 170 5 0 chr9 4139454 4139642 -138131802 + MER5A DNA MER1_type 1 189 0 246 183 9 148 chr9 4139642 4139700 -138131744 - MLT1L LTR MaLR -40 575 511 591 269 36 5 chr9 4139816 4140009 -138131435 - MLT1L LTR MaLR -289 326 128 369 308 38 8 chr9 4141111 4141244 -138130200 + MIR3 SINE MIR 49 185 -23 542 254 37 0 chr9 4141301 4141435 -138130009 + MIR SINE MIR 47 185 -77 618 193 107 0 chr9 4141693 4141843 -138129601 - MER5A DNA MER1_type -10 179 14 402 299 21 35 chr9 4141855 4141999 -138129445 - MER5A DNA MER1_type -28 161 20 281 237 0 118 chr9 4142511 4142604 -138128840 - MIR SINE MIR 0 262 181 1498 139 12 8 chr9 4142848 4143092 -138128352 + THE1B LTR MaLR 120 364 0 1045 266 39 53 chr9 4143121 4143535 -138127909 + MER20B DNA MER1_type 100 507 -276 296 279 0 0 chr9 4143547 4143626 -138127818 + (TA)n Simple_repeat Simple_repeat 2 80 0 886 246 14 7 chr9 4143699 4143975 -138127469 + MER20B DNA MER1_type 505 782 -1 325 350 72 6 chr9 4144544 4144724 -138126720 - MIR SINE MIR -50 212 21 613 265 180 17 chr9 4144988 4145410 -138126034 + MLT1H1 LTR MaLR 32 522 -33 189 0 0 0 chr9 4145775 4145796 -138125648 + (TTAA)n Simple_repeat Simple_repeat 4 24 0 714 142 0 0 chr9 4145799 4145905 -138125539 - AluSx SINE Alu -23 289 184 1347 99 5 36 chr9 4145985 4146177 -138125267 - AluSx SINE Alu -126 186 1 359 291 56 56 chr9 4147804 4148055 -138123389 + L2 LINE L2 2271 2521 -793 1871 146 17 0 chr9 4148479 4148781 -138122663 + AluSx SINE Alu 1 307 -5 693 199 8 0 chr9 4148906 4149037 -138122407 - FLAM_A SINE Alu -1 132 1 203 393 10 81 chr9 4149046 4149354 -138122090 + L2 LINE L2 2901 3186 -86 1028 271 80 18 chr9 4149427 4149826 -138121618 + L1ME3 LINE L1 5486 5909 -261 2179 78 25 6 chr9 4149851 4150173 -138121271 + LTR7 LTR ERV1 121 448 -2 268 237 25 51 chr9 4150281 4150399 -138121045 + L1ME3 LINE L1 5967 6081 -81 1716 152 35 7 chr9 4150433 4150716 -138120728 - AluJb SINE Alu -21 291 1 249 108 0 0 chr9 4150794 4150831 -138120613 + (GA)n Simple_repeat Simple_repeat 2 38 0 540 101 13 0 chr9 4152179 4152258 -138119186 + MADE1 DNA Mariner 1 80 0 341 161 70 119 chr9 4152338 4152481 -138118963 - L1ME4a LINE L1 -11 6110 5975 2188 132 3 0 chr9 4153911 4154222 -138117222 - AluSx SINE Alu 0 312 1 26 0 0 0 chr9 4154222 4154248 -138117196 + AT_rich Low_complexity Low_complexity 1 26 0 21 71 0 0 chr9 4154910 4154952 -138116492 + AT_rich Low_complexity Low_complexity 1 42 0 2250 77 3 46 chr9 4155482 4155807 -138115637 - AluY SINE Alu 0 311 1 1545 176 137 56 chr9 4156197 4156664 -138114780 - MLT1D LTR MaLR 0 505 1 212 263 0 0 chr9 4157021 4157078 -138114366 + (CATA)n Simple_repeat Simple_repeat 4 60 0 504 289 19 120 chr9 4157106 4157212 -138114232 - L2 LINE L2 -199 3114 2999 2254 125 0 0 chr9 4157212 4157515 -138113929 + AluSx SINE Alu 1 303 -9 504 289 19 120 chr9 4157515 4157674 -138113770 - L2 LINE L2 -314 2999 2876 710 245 54 113 chr9 4157761 4158337 -138113107 + MER34 LTR ERV1 1 542 0 240 287 298 0 chr9 4158423 4158517 -138112927 - MIR SINE MIR -115 147 26 336 194 87 0 chr9 4158863 4158966 -138112478 + MER104 DNA Tc2 6 117 -63 1904 114 13 40 chr9 4161196 4161494 -138109950 + AluSx SINE Alu 1 290 -22 273 171 105 57 chr9 4162598 4162703 -138108741 + LTR41 LTR ERVL 5 114 -659 2821 168 42 32 chr9 4162760 4163375 -138108069 - L1MB7 LINE L1 -42 6142 5522 651 249 37 11 chr9 4163376 4163565 -138107879 - MLT1A2 LTR MaLR 0 374 181 1538 289 53 80 chr9 4163581 4164595 -138106849 - L1M4 LINE L1 -1299 4847 3807 270 0 0 0 chr9 4164595 4164625 -138106819 + (TTA)n Simple_repeat Simple_repeat 3 32 0 1984 122 3 14 chr9 4164632 4164920 -138106524 - AluSc SINE Alu -24 285 1 1538 289 53 80 chr9 4164920 4165583 -138105861 - L1M4 LINE L1 -2345 3801 3209 567 190 50 50 chr9 4165621 4165800 -138105644 + LTR41 LTR ERVL 585 763 -10 323 344 21 91 chr9 4165831 4166261 -138105183 + L2 LINE L2 2533 2932 -382 849 313 56 36 chr9 4166786 4167287 -138104157 - LTR33 LTR ERVL -8 513 3 22 35 0 0 chr9 4167331 4167360 -138104084 + AT_rich Low_complexity Low_complexity 1 29 0 331 213 0 0 chr9 4168080 4168141 -138103303 - L2 LINE L2 -1 3271 3211 316 328 50 0 chr9 4168472 4168591 -138102853 - MIR SINE MIR -108 154 30 192 186 0 47 chr9 4168814 4168857 -138102587 + L2 LINE L2 3229 3269 -3 977 220 113 50 chr9 4169726 4170090 -138101354 + LTR33A LTR ERVL 137 523 0 788 283 75 24 chr9 4170473 4170766 -138100678 - MLT1K LTR MaLR -4 584 277 405 399 0 0 chr9 4170944 4171082 -138100362 + MIR3 SINE MIR 19 156 -52 180 262 0 0 chr9 4171262 4171304 -138100140 + MIR3 SINE MIR 150 191 -17 202 264 43 71 chr9 4172254 4172394 -138099050 - L2 LINE L2 -188 3084 2949 1193 288 48 32 chr9 4172508 4173276 -138098168 + L2 LINE L2 2522 3306 -7 851 244 11 0 chr9 4174872 4175048 -138096396 - MER5A DNA MER1_type -5 184 7 599 250 62 82 chr9 4175289 4175533 -138095911 - MLT1K LTR MaLR -2 586 348 332 371 16 8 chr9 4178020 4178144 -138093300 - MIR SINE MIR -63 145 21 573 197 28 35 chr9 4179382 4179524 -138091920 + MER5B DNA MER1_type 35 175 -3 403 292 78 31 chr9 4179525 4179711 -138091733 + MIR SINE MIR 35 227 -35 1655 149 8 4 chr9 4180001 4180263 -138091181 + AluSx SINE Alu 32 294 -18 22 35 0 0 chr9 4180264 4180293 -138091151 + AT_rich Low_complexity Low_complexity 1 29 0 311 164 0 0 chr9 4180356 4180411 -138091033 - Alu SINE Alu -1 300 246 222 226 24 51 chr9 4180486 4180785 -138090659 + CT-rich Low_complexity Low_complexity 1 290 0 2918 6 0 0 chr9 4180946 4181257 -138090187 + AluY SINE Alu 1 311 0 245 326 57 17 chr9 4181273 4181448 -138089996 - MLT1J LTR MaLR 0 511 330 802 296 93 51 chr9 4181766 4182273 -138089171 - LTR67 LTR ERVL 0 557 30 242 139 0 0 chr9 4182347 4182383 -138089061 - MIR SINE MIR -62 146 111 434 280 70 33 chr9 4182390 4182661 -138088783 + L1MC4a LINE L1 5629 5909 -1899 1708 130 7 29 chr9 4182784 4183061 -138088383 + Tigger5 DNA MER2_type 2052 2322 -1 309 51 0 0 chr9 4183072 4183111 -138088333 + (CA)n Simple_repeat Simple_repeat 2 40 0 279 200 104 32 chr9 4183121 4183246 -138088198 + L1ME4a LINE L1 5985 6118 -3 201 191 0 24 chr9 4184655 4184697 -138086747 + T-rich Low_complexity Low_complexity 2 42 0 699 250 101 48 chr9 4184839 4185087 -138086357 + MIR SINE MIR 2 262 0 180 183 14 42 chr9 4185794 4185805 -138085639 + CT-rich Low_complexity Low_complexity 4 14 -58 1259 225 78 52 chr9 4185805 4186191 -138085253 - MSTD LTR MaLR 0 396 1 180 183 14 42 chr9 4186191 4186250 -138085194 + CT-rich Low_complexity Low_complexity 14 72 0 596 132 9 0 chr9 4186340 4186446 -138084998 + C-rich Low_complexity Low_complexity 5 111 0 2604 86 44 17 chr9 4186886 4187248 -138084196 - THE1C LTR MaLR 0 375 4 10152 98 46 47 chr9 4187251 4188521 -138082923 - THE1C-int LTR MaLR 0 1580 310 2357 127 48 20 chr9 4188521 4188875 -138082569 + THE1B LTR MaLR 1 364 0 12584 93 4 0 chr9 4188875 4190449 -138080995 + THE1B-int LTR MaLR 1 1580 0 2203 145 54 20 chr9 4190449 4190801 -138080643 + THE1B LTR MaLR 1 364 0 10152 98 46 47 chr9 4190801 4191110 -138080334 - THE1C-int LTR MaLR -1267 313 1 2944 96 5 16 chr9 4191112 4191489 -138079955 - THE1C LTR MaLR -2 373 1 266 197 28 155 chr9 4191892 4192034 -138079410 + LTR67 LTR ERVL 434 557 0 2803 136 13 75 chr9 4192968 4193491 -138077953 + L1MB3 LINE L1 5693 6183 0 415 276 104 8 chr9 4193788 4193922 -138077522 - MIR SINE MIR -65 197 51 257 366 67 8 chr9 4195243 4195377 -138076067 + MIR3 SINE MIR 19 160 -48 182 37 37 0 chr9 4196838 4196865 -138074579 + (CAATT)n Simple_repeat Simple_repeat 1 28 0 368 243 54 45 chr9 4196872 4196983 -138074461 - L2 LINE L2 -22 3250 3139 686 184 171 13 chr9 4197754 4197912 -138073532 + MER5A DNA MER1_type 7 189 0 184 195 0 24 chr9 4197912 4197951 -138073493 - MIR SINE MIR -64 198 161 213 277 0 0 chr9 4198182 4198229 -138073215 + (CACG)n Simple_repeat Simple_repeat 1 47 0 183 129 0 0 chr9 4198669 4198700 -138072744 + (TTCA)n Simple_repeat Simple_repeat 2 32 0 183 200 60 60 chr9 4198776 4198826 -138072618 + L2 LINE L2 3222 3271 -1 1257 278 75 63 chr9 4199843 4199986 -138071458 - L1ME3A LINE L1 -144 6262 6122 2020 152 66 23 chr9 4199986 4200335 -138071109 + MER47A DNA MER2_type 2 365 -1 1257 278 75 63 chr9 4200335 4200467 -138070977 - L1ME3A LINE L1 -284 6122 5993 16839 146 35 8 chr9 4200467 4200824 -138070620 + Tigger4(Zombi) DNA MER2_type 1 347 -2384 195 100 0 0 chr9 4200824 4200854 -138070590 + (TTG)n Simple_repeat Simple_repeat 1 30 0 16839 146 35 8 chr9 4200854 4203157 -138068287 + Tigger4(Zombi) DNA MER2_type 347 2731 0 1257 278 75 63 chr9 4203157 4203412 -138068032 - L1ME3A LINE L1 -413 5993 5743 1354 156 138 86 chr9 4203412 4203600 -138067844 - MER2 DNA MER2_type 0 344 129 1691 133 94 0 chr9 4203600 4203877 -138067567 + AluSx SINE Alu 5 305 0 1354 156 138 86 chr9 4203877 4204014 -138067430 - MER2 DNA MER2_type -215 129 1 1257 278 75 63 chr9 4204014 4205320 -138066124 - L1ME3A LINE L1 -663 5743 4402 26 21 0 42 chr9 4205496 4205511 -138065933 + AT_rich Low_complexity Low_complexity 1 15 -31 2524 38 0 0 chr9 4205511 4205801 -138065643 - AluY SINE Alu -21 290 1 26 21 0 42 chr9 4205801 4205833 -138065611 + AT_rich Low_complexity Low_complexity 15 46 0 552 267 74 20 chr9 4205997 4206199 -138065245 + MLT1I LTR MaLR 3 215 -194 518 258 60 56 chr9 4206339 4206914 -138064530 - L1ME3A LINE L1 -3518 2864 2287 344 290 44 47 chr9 4206900 4207497 -138063947 - HAL1b LINE L1 -885 1165 1077 * 236 286 60 23 chr9 4208364 4208497 -138062947 - L1M4 LINE L1 -1978 4168 4031 1227 42 56 0 chr9 4208803 4208947 -138062497 - L1PA8 LINE L1 -14 6158 6007 290 276 81 0 chr9 4210571 4210658 -138060786 - MIR SINE MIR -77 185 92 188 348 73 39 chr9 4211026 4211204 -138060240 + MIR3 SINE MIR 15 198 -10 2861 72 119 5 chr9 4211212 4211614 -138059830 - LTR7 LTR ERV1 -2 448 1 2254 107 62 16 chr9 4211614 4211987 -138059457 - HERVH LTR ERV1 0 7713 7324 1390 134 19 0 chr9 4211987 4212203 -138059241 - HERVH LTR ERV1 -1894 5819 5600 3808 145 2 2 chr9 4212207 4212779 -138058665 - HERVH LTR ERV1 -2567 5146 4575 1334 104 0 0 chr9 4212776 4212959 -138058485 - HERVH LTR ERV1 -3043 4670 4488 * 6451 69 2 2 chr9 4212961 4213815 -138057629 - HERVH LTR ERV1 -3720 3993 3140 * 16169 93 21 24 chr9 4213801 4216676 -138054768 - HERVH LTR ERV1 -4721 2992 1 2638 73 128 5 chr9 4216678 4217077 -138054367 - LTR7 LTR ERV1 -2 448 1 2491 248 65 44 chr9 4217714 4218391 -138053053 - MER115 DNA AcHobo 0 693 3 213 39 0 0 chr9 4218897 4218923 -138052521 + (CA)n Simple_repeat Simple_repeat 2 27 0 360 0 0 0 chr9 4218995 4219035 -138052409 + (TG)n Simple_repeat Simple_repeat 1 40 0 401 306 91 39 chr9 4219348 4219580 -138051864 + LTR16A LTR ERVL 201 444 -6 310 184 0 105 chr9 4219671 4219747 -138051697 + L2 LINE L2 3246 3313 0 2435 162 77 46 chr9 4220264 4220852 -138050592 - L1MB4 LINE L1 -6 6174 5569 528 239 34 0 chr9 4220913 4221030 -138050414 - MER103 DNA DNA -44 122 2 295 239 27 133 chr9 4221205 4221393 -138050051 + L2 LINE L2 2917 3084 -188 371 266 40 102 chr9 4221473 4221650 -138049794 - MER5A DNA MER1_type -12 177 12 203 170 21 0 chr9 4221717 4221764 -138049680 + (TGAA)n Simple_repeat Simple_repeat 1 48 0 185 234 0 0 chr9 4221768 4221815 -138049629 + MIR3 SINE MIR 121 167 -41 1545 176 54 57 chr9 4222782 4223118 -138048326 + MER58B DNA MER1_type 6 340 -1 1035 254 86 84 chr9 4223193 4223751 -138047693 - L1ME3A LINE L1 -75 6095 5537 234 0 0 0 chr9 4223922 4223948 -138047496 + (A)n Simple_repeat Simple_repeat 1 26 0 201 39 0 0 chr9 4224698 4224724 -138046720 + (CAAA)n Simple_repeat Simple_repeat 2 27 0 21 0 0 0 chr9 4225232 4225253 -138046191 + AT_rich Low_complexity Low_complexity 1 21 0 22 0 0 0 chr9 4225625 4225647 -138045797 + AT_rich Low_complexity Low_complexity 1 22 0 367 353 85 34 chr9 4229054 4229465 -138041979 - L2 LINE L2 -338 2976 2545 318 294 105 14 chr9 4230751 4230894 -138040550 + MIR SINE MIR 107 262 0 803 327 55 35 chr9 4231604 4232200 -138039244 + L1ME4a LINE L1 5309 5916 -205 847 192 66 6 chr9 4232301 4232483 -138038961 + MIR SINE MIR 7 199 -63 48 77 0 0 chr9 4232487 4232591 -138038853 + AT_rich Low_complexity Low_complexity 1 104 0 1135 168 73 0 chr9 4234657 4234848 -138036596 + MER3 DNA MER1_type 5 209 0 272 302 16 48 chr9 4235944 4236070 -138035374 + MIR SINE MIR 135 256 -6 376 301 62 0 chr9 4236140 4236253 -138035191 - L2 LINE L2 -34 3279 3160 5001 150 53 15 chr9 4237548 4238395 -138033049 + L1MC1 LINE L1 5449 6327 -6 618 278 0 13 chr9 4238408 4238559 -138032885 + L2 LINE L2 3165 3313 0 343 309 82 31 chr9 4239784 4239978 -138031466 - MIR SINE MIR -6 256 53 194 343 187 6 chr9 4240316 4240482 -138030962 + MIR SINE MIR 49 244 -18 375 245 68 54 chr9 4241633 4241780 -138029664 + MIR SINE MIR 6 154 -108 2042 130 0 0 chr9 4242503 4242788 -138028656 + AluSg SINE Alu 1 285 -25 223 265 163 31 chr9 4242952 4243050 -138028394 + MER5A DNA MER1_type 35 145 -44 238 237 51 17 chr9 4243878 4243937 -138027507 - L2 LINE L2 -3 3310 3250 551 300 119 83 chr9 4245112 4245632 -138025812 + L1MC4a LINE L1 5373 5677 -444 261 182 0 0 chr9 4246022 4246077 -138025367 + (CA)n Simple_repeat Simple_repeat 2 56 0 609 288 79 14 chr9 4246158 4246373 -138025071 + MIR SINE MIR 2 230 -32 284 278 121 10 chr9 4246603 4246716 -138024728 + MIR SINE MIR 28 159 -49 2044 129 0 0 chr9 4247213 4247544 -138023900 + AluSx SINE Alu 1 331 0 2385 92 0 3 chr9 4248530 4248844 -138022600 + AluSq SINE Alu 1 313 0 180 182 0 0 chr9 4249559 4249592 -138021852 - MIR SINE MIR -107 155 123 393 343 9 23 chr9 4249720 4249936 -138021508 + MLT1J LTR MaLR 217 429 -82 2178 119 0 3 chr9 4249937 4250232 -138021212 + AluSx SINE Alu 1 294 -18 280 287 47 62 chr9 4250986 4251284 -138020160 + L2 LINE L2 2785 3078 -194 2109 134 0 7 chr9 4252172 4252477 -138018967 + AluSx SINE Alu 1 303 -9 1735 168 25 14 chr9 4253237 4253522 -138017922 + AluJo SINE Alu 1 288 -24 247 350 121 7 chr9 4253712 4253852 -138017592 - L2 LINE L2 -2 3311 3156 208 331 221 17 chr9 4253848 4254029 -138017415 - MIR SINE MIR -13 249 32 * 399 191 56 0 chr9 4254050 4254139 -138017305 - L1ME4a LINE L1 -65 6056 5963 589 221 61 31 chr9 4254206 4254369 -138017075 - MER104 DNA Tc2 -4 176 9 233 254 111 71 chr9 4254479 4254605 -138016839 + L2 LINE L2 3142 3272 0 2308 86 0 26 chr9 4254852 4255155 -138016289 - AluY SINE Alu -16 295 1 219 339 95 37 chr9 4255791 4255980 -138015464 - L2 LINE L2 -122 3150 2951 459 0 0 0 chr9 4259662 4259713 -138011731 + (CA)n Simple_repeat Simple_repeat 2 52 0 2443 84 7 0 chr9 4260305 4260614 -138010830 + AluY SINE Alu 1 311 0 219 349 18 37 chr9 4260938 4261047 -138010397 + MIR SINE MIR 21 127 -135 508 306 79 24 chr9 4261104 4261356 -138010088 - L2 LINE L2 0 3313 3048 4583 72 19 60 chr9 4261607 4262275 -138009169 + L1PA10 LINE L1 5528 6168 0 324 273 127 11 chr9 4262399 4262517 -138008927 - MIR3 SINE MIR -3 205 73 295 291 87 44 chr9 4266440 4266646 -138004798 - L2 LINE L2 0 3313 3099 976 71 16 0 chr9 4266655 4266781 -138004663 + AluY SINE Alu 165 292 -19 983 275 83 48 chr9 4266805 4267404 -138004040 - L2 LINE L2 -244 3069 2445 215 61 30 0 chr9 4267534 4267567 -138003877 + (TTG)n Simple_repeat Simple_repeat 2 35 0 399 113 0 0 chr9 4268027 4268089 -138003355 + (TG)n Simple_repeat Simple_repeat 1 62 0 476 300 52 67 chr9 4269220 4269430 -138002014 + L2 LINE L2 3030 3236 -36 252 0 0 0 chr9 4269578 4269606 -138001838 + (TG)n Simple_repeat Simple_repeat 2 29 0 229 367 69 49 chr9 4270049 4270354 -138001090 - L2 LINE L2 -47 3225 2915 2086 177 61 34 chr9 4270506 4270735 -138000709 + L1MA4A LINE L1 2729 2950 -3353 2177 134 19 46 chr9 4270735 4271107 -138000337 - THE1B LTR MaLR 0 364 3 12426 98 4 4 chr9 4271109 4272690 -137998754 - THE1B-int LTR MaLR 0 1580 1 1913 150 33 46 chr9 4272692 4273059 -137998385 - THE1B LTR MaLR -2 362 1 2086 177 61 34 chr9 4273059 4273865 -137997579 + L1MA4A LINE L1 2950 6121 -182 462 189 0 27 chr9 4273876 4273987 -137997457 + L1MA4A LINE L1 6195 6302 -1 5099 168 38 15 chr9 4274283 4275126 -137996318 + MER21B LTR ERV1 1 862 -1 1210 237 18 85 chr9 4276414 4276908 -137994536 + L1MC4 LINE L1 7431 7891 -151 558 132 0 41 chr9 4276946 4277067 -137994377 + (GGGA)n Simple_repeat Simple_repeat 4 119 0 280 205 27 98 chr9 4277079 4277191 -137994253 + L1MC4 LINE L1 7939 8042 0 260 267 11 33 chr9 4277222 4277312 -137994132 - MIR SINE MIR -136 126 39 252 321 83 90 chr9 4277800 4278377 -137993067 + L2 LINE L2 2271 2843 -471 356 399 70 38 chr9 4278433 4278774 -137992670 + L2 LINE L2 2916 3267 -5 246 308 66 0 chr9 4282434 4282525 -137988919 - L2 LINE L2 -3 3269 3173 229 239 0 0 chr9 4282630 4282676 -137988768 - LTR16C LTR ERVL -257 234 189 223 245 19 0 chr9 4284878 4284931 -137986513 - MER5A DNA MER1_type -127 62 9 326 300 0 58 chr9 4285052 4285172 -137986272 - MIR SINE MIR -116 146 34 424 220 165 55 chr9 4286212 4286430 -137985014 + MIR SINE MIR 21 262 0 652 234 18 80 chr9 4290024 4290250 -137981194 - MER58C DNA MER1_type 0 215 4 427 291 200 0 chr9 4290889 4291064 -137980380 - MIR SINE MIR -19 243 34 212 0 36 0 chr9 4291111 4291139 -137980305 + (CAA)n Simple_repeat Simple_repeat 2 30 0 180 111 0 0 chr9 4291459 4291486 -137979958 + (GGA)n Simple_repeat Simple_repeat 3 29 0 1641 170 28 28 chr9 4291794 4292082 -137979362 + AluJo SINE Alu 13 300 -12 1127 101 63 0 chr9 4293319 4293478 -137977966 - L1PA13 LINE L1 -10 6153 5985 815 131 12 101 chr9 4294070 4294238 -137977206 + MER5A DNA MER1_type 23 175 -14 2142 110 0 13 chr9 4296747 4297047 -137974397 + AluSx SINE Alu 3 298 -14 27 29 0 0 chr9 4297797 4297831 -137973613 + AT_rich Low_complexity Low_complexity 1 34 0 636 314 131 23 chr9 4300089 4300516 -137970928 - L2 LINE L2 -2 3311 2839 410 257 138 83 chr9 4300561 4301004 -137970440 + L1ME LINE L1 5352 5818 -303 838 227 66 103 chr9 4301189 4301656 -137969788 + LTR7 LTR ERV1 1 450 0 828 251 55 5 chr9 4301678 4301877 -137969567 - MER63A DNA MER1_type -1 209 1 531 161 301 0 chr9 4302949 4303092 -137968352 - MER5A DNA MER1_type -2 187 2 804 248 140 30 chr9 4303941 4304276 -137967168 - L2 LINE L2 0 3313 2942 1707 167 31 97 chr9 4304480 4304905 -137966539 + MLT2C1 LTR ERVL 1 397 0 256 293 240 33 chr9 4305097 4305247 -137966197 - MIR SINE MIR -80 182 2 2273 70 0 63 chr9 4305339 4305654 -137965790 - AluY SINE Alu -16 295 1 956 288 179 39 chr9 4306291 4307004 -137964440 - L2 LINE L2 -239 3074 2247 342 0 0 0 chr9 4307970 4308008 -137963436 + (CA)n Simple_repeat Simple_repeat 2 39 0 580 248 117 9 chr9 4308019 4308233 -137963211 + LTR16A1 LTR ERVL 217 453 -4 402 359 37 23 chr9 4308466 4308683 -137962761 - L3 LINE CR1 -19 1558 1339 219 36 0 0 chr9 4309055 4309083 -137962361 + (T)n Simple_repeat Simple_repeat 1 28 0 830 150 72 7 chr9 4310159 4310312 -137961132 + MER3 DNA MER1_type 4 166 -43 286 265 35 105 chr9 4310347 4310547 -137960897 - L3 LINE CR1 -99 1478 1293 1555 188 7 11 chr9 4310691 4310983 -137960461 - AluJo SINE Alu 0 312 23 389 297 61 12 chr9 4311051 4311216 -137960228 + MIR SINE MIR 76 248 -14 292 309 127 27 chr9 4311214 4311434 -137960010 - L3 LINE CR1 -369 1208 967 * 446 48 0 16 chr9 4311443 4311505 -137959939 + (TTCC)n Simple_repeat Simple_repeat 1 61 0 340 320 0 10 chr9 4311509 4311609 -137959835 - L2 LINE L2 -18 3295 3197 524 316 47 19 chr9 4311968 4312180 -137959264 + MIR SINE MIR 36 253 -9 471 278 78 17 chr9 4312329 4312509 -137958935 + MIR SINE MIR 2 192 -70 185 385 13 0 chr9 4313958 4314036 -137957408 + L2 LINE L2 2992 3070 -202 1747 153 0 68 chr9 4314491 4314817 -137956627 - AluJo SINE Alu -8 304 1 1671 199 130 31 chr9 4318643 4319059 -137952385 + LTR40b LTR ERVL 3 459 -3 353 333 44 7 chr9 4319606 4319741 -137951703 + MIR3 SINE MIR 5 144 -64 * 400 63 11 11 chr9 4319723 4319789 -137951655 - L1PA13 LINE L1 -211 5952 5906 * 1661 99 37 4 chr9 4319760 4320003 -137951441 + L1PA13 LINE L1 5913 6207 0 207 91 45 45 chr9 4320003 4320047 -137951397 + A-rich Low_complexity Low_complexity 3 180 0 2585 56 0 0 chr9 4320351 4320653 -137950791 - AluY SINE Alu -9 302 1 22 0 0 0 chr9 4320960 4320982 -137950462 + AT_rich Low_complexity Low_complexity 1 22 0 251 247 114 63 chr9 4321622 4321780 -137949664 - MIR SINE MIR -19 243 78 327 25 0 0 chr9 4322274 4322314 -137949130 + (CA)n Simple_repeat Simple_repeat 2 41 0 236 350 63 0 chr9 4322445 4322588 -137948856 + L1ME LINE L1 5669 5820 -301 645 327 156 21 chr9 4323036 4323510 -137947934 + L3 LINE CR1 47 584 -993 417 93 0 0 chr9 4324237 4324291 -137947153 + AluS SINE Alu 21 74 -238 2520 163 133 9 chr9 4325762 4325948 -137945496 + MER6A DNA MER2_type 1 163 -702 231 114 0 0 chr9 4325948 4325983 -137945461 + (TG)n Simple_repeat Simple_repeat 1 35 0 2520 163 133 9 chr9 4325983 4326329 -137945115 + MER6A DNA MER2_type 163 599 -6 2329 85 10 3 chr9 4326584 4326891 -137944553 - AluY SINE Alu -2 309 1 183 250 0 0 chr9 4326930 4326982 -137944462 + CT-rich Low_complexity Low_complexity 1 52 0 1934 118 33 26 chr9 4326982 4327286 -137944158 - AluSx SINE Alu -6 306 1 642 275 75 32 chr9 4327323 4327603 -137943841 + L2 LINE L2 3022 3313 0 266 267 33 22 chr9 4327735 4327825 -137943619 - MER103 DNA DNA -68 98 8 456 303 45 26 chr9 4331969 4332124 -137939320 + L3 LINE CR1 1417 1574 -3 1126 125 0 34 chr9 4333543 4333719 -137937725 - AluSq SINE Alu -19 294 125 207 0 0 0 chr9 4334056 4334079 -137937365 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 229 303 0 53 chr9 4334368 4334444 -137937000 - L2 LINE L2 -37 3276 3205 2357 107 3 0 chr9 4334760 4335070 -137936374 - AluSx SINE Alu -1 311 1 22 0 0 0 chr9 4336344 4336366 -137935078 + AT_rich Low_complexity Low_complexity 1 22 0 519 333 75 50 chr9 4339832 4340270 -137931174 + HAL1b LINE L1 236 684 -664 680 193 93 7 chr9 4341299 4341449 -137929995 + MER5A DNA MER1_type 2 164 -25 328 310 124 8 chr9 4341486 4341615 -137929829 + MER91B DNA MER1_type 46 189 -1 207 0 0 0 chr9 4341715 4341738 -137929706 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 739 70 18 26 chr9 4341740 4341854 -137929590 - L1HS LINE L1 -5 6150 6038 22 35 0 0 chr9 4342205 4342234 -137929210 + AT_rich Low_complexity Low_complexity 1 29 0 180 286 27 129 chr9 4343003 4343150 -137928294 + MER5A DNA MER1_type 48 179 -10 * 420 246 179 30 chr9 4343037 4343171 -137928273 - MER5A DNA MER1_type -32 157 4 1290 216 78 35 chr9 4345102 4345500 -137925944 - MSTB2 LTR MaLR 0 457 43 518 298 153 55 chr9 4346277 4346696 -137924748 + L2 LINE L2 2810 3269 -3 232 224 20 0 chr9 4349220 4349269 -137922175 + MIR SINE MIR 212 261 -1 532 219 16 24 chr9 4349302 4349425 -137922019 - MIR SINE MIR -105 157 36 198 294 15 44 chr9 4350032 4350100 -137921344 + L2 LINE L2 3246 3311 -2 1250 307 115 7 chr9 4350279 4351015 -137920429 + L2 LINE L2 2251 3061 -211 35 24 0 0 chr9 4351938 4351980 -137919464 + AT_rich Low_complexity Low_complexity 1 42 0 465 50 0 0 chr9 4352203 4352263 -137919181 + (CA)n Simple_repeat Simple_repeat 2 61 0 265 250 62 0 chr9 4352889 4352953 -137918491 + L2 LINE L2 3179 3246 -26 412 240 10 21 chr9 4353158 4353254 -137918190 - MER5A DNA MER1_type -84 105 11 324 0 0 0 chr9 4354122 4354158 -137917286 + (TC)n Simple_repeat Simple_repeat 2 37 0 243 0 0 0 chr9 4354157 4354184 -137917260 + (TA)n Simple_repeat Simple_repeat 2 28 0 * 219 152 0 0 chr9 4354195 4354241 -137917203 + (CA)n Simple_repeat Simple_repeat 1 46 0 183 290 120 50 chr9 4354558 4354658 -137916786 - MIR SINE MIR -60 148 42 276 100 0 0 chr9 4356390 4356430 -137915014 + (A)n Simple_repeat Simple_repeat 1 40 0 252 0 0 0 chr9 4356989 4357017 -137914427 + (TTTTG)n Simple_repeat Simple_repeat 3 30 0 216 306 88 64 chr9 4358647 4358888 -137912556 - MIR3 SINE MIR -14 248 1 327 355 57 21 chr9 4358932 4359073 -137912371 - L2 LINE L2 -5 3267 3122 1905 168 0 42 chr9 4359411 4359792 -137911652 + MLT1A1 LTR MaLR 1 365 0 459 301 106 17 chr9 4359794 4360030 -137911414 + L2 LINE L2 2699 2955 -359 1506 138 6 114 chr9 4360119 4360230 -137911214 + MLT1B LTR MaLR 69 190 -200 1985 116 53 0 chr9 4360230 4360515 -137910929 + AluSx SINE Alu 1 300 -12 1506 138 6 114 chr9 4360515 4360764 -137910680 + MLT1B LTR MaLR 190 390 0 494 286 79 26 chr9 4360782 4360971 -137910473 + L2 LINE L2 3115 3313 0 1780 173 0 46 chr9 4362283 4362607 -137908837 + AluJo SINE Alu 1 309 -3 181 352 0 70 chr9 4365300 4365371 -137906073 + MIR SINE MIR 32 97 -165 2432 82 3 0 chr9 4365544 4365850 -137905594 - AluSx SINE Alu -1 311 5 258 291 12 47 chr9 4366292 4366378 -137905066 + MER5A DNA MER1_type 6 88 -101 433 262 21 48 chr9 4366439 4366584 -137904860 + L2 LINE L2 3171 3311 -2 2009 78 81 3 chr9 4366874 4367158 -137904286 + AluSx SINE Alu 1 306 -6 620 235 31 15 chr9 4367165 4367361 -137904083 - L1MB7 LINE L1 -10 6174 5976 237 33 0 0 chr9 4367372 4367402 -137904042 + (A)n Simple_repeat Simple_repeat 1 30 0 2282 117 3 0 chr9 4367583 4367891 -137903553 + AluSx SINE Alu 2 310 -2 253 321 6 13 chr9 4367987 4368146 -137903298 + L1MC4a LINE L1 5775 5932 -1876 261 259 74 30 chr9 4369016 4369151 -137902293 - L1ME3A LINE L1 -5 6165 6025 450 165 132 0 chr9 4370920 4371011 -137900433 + MER20 DNA MER1_type 116 218 -1 656 161 0 32 chr9 4371312 4371498 -137899946 + GA-rich Low_complexity Low_complexity 1 180 0 1228 243 118 17 chr9 4373359 4373767 -137897677 - MER77 LTR ERV1 -3 602 154 239 210 170 30 chr9 4373809 4373909 -137897535 - MER77 LTR ERV1 -438 167 54 432 0 0 0 chr9 4377156 4377204 -137894240 + (A)n Simple_repeat Simple_repeat 1 48 0 258 286 97 45 chr9 4378699 4378968 -137892476 - L1ME3A LINE L1 -117 6004 5722 245 260 10 30 chr9 4378973 4379073 -137892371 + (TA)n Simple_repeat Simple_repeat 1 98 0 1010 152 73 0 chr9 4379268 4379459 -137891985 - MER2 DNA MER2_type -134 211 7 288 219 0 14 chr9 4379846 4379919 -137891525 + MIR SINE MIR 61 132 -130 217 231 29 77 chr9 4379888 4379992 -137891452 + L2 LINE L2 2993 3091 -181 * 442 272 76 86 chr9 4380122 4380412 -137891032 - L2 LINE L2 -3 3310 3024 314 239 97 18 chr9 4380673 4380786 -137890658 - MIR3 SINE MIR -76 132 11 186 43 0 0 chr9 4381174 4381197 -137890247 + (TTC)n Simple_repeat Simple_repeat 2 24 0 287 229 324 17 chr9 4381816 4381995 -137889449 + L2 LINE L2 3008 3241 -31 2313 113 25 19 chr9 4383391 4383753 -137887691 + THE1B LTR MaLR 1 364 0 4878 99 4 3 chr9 4383753 4384461 -137886983 + THE1B-int LTR MaLR 1 709 -871 4350 102 16 0 chr9 4384459 4385077 -137886367 + THE1B-int LTR MaLR 953 1580 0 * 2391 125 8 16 chr9 4385077 4385444 -137886000 + THE1B LTR MaLR 1 364 0 26 0 0 0 chr9 4385495 4385521 -137885923 + AT_rich Low_complexity Low_complexity 1 26 0 1732 164 7 18 chr9 4385522 4385808 -137885636 - AluJb SINE Alu -29 283 1 3230 195 52 46 chr9 4386988 4387780 -137883664 + L1MD2 LINE L1 653 1439 -4967 2302 107 16 0 chr9 4387780 4388088 -137883356 + AluSq SINE Alu 1 313 0 3230 195 52 46 chr9 4388088 4388330 -137883114 + L1MD2 LINE L1 1439 1678 -4728 580 144 18 0 chr9 4388330 4388441 -137883003 - L1MA9 LINE L1 -4 6308 6196 3230 195 52 46 chr9 4388441 4388723 -137882721 + L1MD2 LINE L1 1678 1949 -4457 4378 202 50 13 chr9 4388880 4390420 -137881024 + L1MD2 LINE L1 5009 6595 -24 2562 59 0 0 chr9 4392044 4392350 -137879094 - AluY SINE Alu -5 306 1 216 91 23 45 chr9 4393830 4393874 -137877570 + (TATATG)n Simple_repeat Simple_repeat 5 47 0 333 268 89 8 chr9 4394027 4394150 -137877294 - L1ME4a LINE L1 -241 5880 5748 760 212 118 6 chr9 4394321 4394491 -137876953 - MER5A DNA MER1_type 0 189 1 269 106 64 0 chr9 4394512 4394559 -137876885 + U5 snRNA snRNA 1 50 -66 812 308 68 51 chr9 4395109 4396337 -137875107 + L1MDa LINE L1 4 1252 -4867 380 338 125 10 chr9 4396374 4396710 -137874734 + L1MDa LINE L1 1407 1691 -863 652 307 92 10 chr9 4396886 4397397 -137874047 + L1ME3A LINE L1 2958 3510 -2636 2218 71 7 24 chr9 4397426 4397721 -137873723 + AluSp SINE Alu 1 290 -23 266 0 0 29 chr9 4397726 4397761 -137873683 + (TAAAA)n Simple_repeat Simple_repeat 2 35 0 317 258 207 35 chr9 4397861 4398319 -137873125 + L1ME3A LINE L1 3712 4248 -1898 1898 295 82 45 chr9 4398380 4399782 -137871662 - L1MC4a LINE L1 -864 6944 5491 543 286 52 44 chr9 4399799 4400317 -137871127 + L1ME3A LINE L1 4325 4846 -1300 438 289 35 39 chr9 4400341 4400653 -137870791 + L1ME3A LINE L1 5647 5957 -213 22 70 0 0 chr9 4400834 4400877 -137870567 + AT_rich Low_complexity Low_complexity 1 43 0 364 348 166 7 chr9 4400967 4401378 -137870066 + L2 LINE L2 2722 3186 -86 247 370 65 0 chr9 4401387 4401495 -137869949 - L2 LINE L2 -9 3263 3149 2131 166 67 34 chr9 4402319 4402796 -137868648 + MLT1D LTR MaLR 13 505 0 260 263 77 72 chr9 4403068 4403262 -137868182 + MLT1L LTR MaLR 197 391 -224 854 137 0 0 chr9 4403458 4403575 -137867869 + FLAM_C SINE Alu 1 117 -16 248 378 96 22 chr9 4404369 4404504 -137866940 - L2 LINE L2 -12 3260 3116 236 238 188 20 chr9 4405089 4405190 -137866254 - MIR SINE MIR -7 255 138 309 232 49 0 chr9 4405574 4405656 -137865788 + L1MC/D LINE L1 5567 5652 -469 294 273 10 20 chr9 4405684 4405783 -137865661 + (CATA)n Simple_repeat Simple_repeat 1 98 0 846 255 48 0 chr9 4405799 4406007 -137865437 + MIR SINE MIR 2 219 -43 267 210 86 25 chr9 4406057 4406138 -137865306 + L1MC/D LINE L1 5712 5797 -2011 225 0 0 0 chr9 4406665 4406690 -137864754 + (A)n Simple_repeat Simple_repeat 1 25 0 375 332 93 21 chr9 4406927 4407120 -137864324 - MIR SINE MIR -36 226 20 527 303 40 34 chr9 4409143 4409318 -137862126 - MIR3 SINE MIR -21 187 12 520 188 255 0 chr9 4410341 4410490 -137860954 - MER20 DNA MER1_type -2 217 31 732 301 35 13 chr9 4410547 4410776 -137860668 + MIR SINE MIR 9 242 -20 237 310 41 47 chr9 4410801 4410972 -137860472 + MLT2E LTR ERVL 41 210 -418 192 269 39 39 chr9 4411644 4411722 -137859722 - L2 LINE L2 -52 3220 3143 217 364 50 8 chr9 4412532 4412653 -137858791 + L2 LINE L2 3146 3271 -1 2196 119 0 0 chr9 4413120 4413415 -137858029 - AluSq SINE Alu 0 313 19 187 265 0 20 chr9 4413903 4413952 -137857492 + L2 LINE L2 3213 3260 -12 204 264 0 83 chr9 4414256 4414328 -137857116 + MER91A DNA MER1_type 2 67 -129 1762 193 32 10 chr9 4414715 4415115 -137856329 + MLT1C LTR MaLR 59 467 0 353 284 9 18 chr9 4415115 4415224 -137856220 - MIR3 SINE MIR -42 166 59 331 271 148 63 chr9 4415250 4415534 -137855910 - L2 LINE L2 -1 3312 3005 2356 101 0 3 chr9 4415966 4416273 -137855171 + AluSx SINE Alu 1 306 -6 212 147 0 0 chr9 4418503 4418537 -137852907 + (GGAA)n Simple_repeat Simple_repeat 3 36 0 203 263 11 63 chr9 4419643 4419738 -137851706 - MIR SINE MIR -133 129 40 805 239 73 121 chr9 4419820 4420081 -137851363 - L2 LINE L2 -6 3307 3078 1540 167 21 76 chr9 4420081 4420411 -137851033 - AluJo SINE Alu 0 312 1 805 239 73 121 chr9 4420411 4420630 -137850814 - L2 LINE L2 -235 3078 2850 293 0 27 0 chr9 4420649 4420686 -137850758 + (TTTTG)n Simple_repeat Simple_repeat 2 39 0 294 73 0 0 chr9 4421510 4421551 -137849893 + (TATATG)n Simple_repeat Simple_repeat 2 42 0 448 290 27 39 chr9 4422450 4422641 -137848803 - MIR SINE MIR -25 237 46 2020 224 50 32 chr9 4422879 4423445 -137847999 + L1ME1 LINE L1 5584 6159 -7 25 31 0 0 chr9 4423507 4423539 -137847905 + AT_rich Low_complexity Low_complexity 1 32 0 339 222 81 40 chr9 4424148 4424247 -137847197 + MER5C DNA MER1_type 21 123 -201 240 192 0 0 chr9 4424391 4424443 -137847001 + MER5C DNA MER1_type 270 321 -3 387 316 121 16 chr9 4425115 4425305 -137846139 + L2 LINE L2 3016 3225 -47 2161 108 7 10 chr9 4425327 4425633 -137845811 + AluSx SINE Alu 1 305 -7 2099 121 0 0 chr9 4425741 4426046 -137845398 - AluSc SINE Alu -4 305 1 189 0 0 0 chr9 4426888 4426909 -137844535 + (TCTA)n Simple_repeat Simple_repeat 1 21 0 321 292 186 6 chr9 4427177 4427338 -137844106 - MIR SINE MIR -48 214 25 204 40 0 0 chr9 4427364 4427389 -137844055 + (GGGAGA)n Simple_repeat Simple_repeat 1 25 0 494 273 74 51 chr9 4428495 4428711 -137842733 + MIR SINE MIR 28 248 -14 652 232 82 1 chr9 4428857 4429072 -137842372 - L1ME3A LINE L1 -7 6155 5929 7132 109 34 9 chr9 4429681 4431074 -137840370 - L1MA1 LINE L1 -4 6298 4863 4186 168 42 9 chr9 4431259 4432022 -137839422 + L1MB5 LINE L1 5386 6173 -1 40 37 0 0 chr9 4432798 4432852 -137838592 + AT_rich Low_complexity Low_complexity 1 54 0 2408 70 3 3 chr9 4433213 4433513 -137837931 - AluY SINE Alu -11 300 1 324 366 41 0 chr9 4433514 4433637 -137837807 - MER115 DNA AcHobo -175 518 391 740 345 9 4 chr9 4433686 4433915 -137837529 - MER115 DNA AcHobo -413 280 51 425 264 28 9 chr9 4433920 4434026 -137837418 + MER5A DNA MER1_type 7 114 -75 234 0 0 0 chr9 4434225 4434251 -137837193 + (A)n Simple_repeat Simple_repeat 1 26 0 1347 201 30 30 chr9 4434322 4434590 -137836854 + AluJb SINE Alu 23 290 -22 451 311 122 31 chr9 4435488 4435710 -137835734 - MIR SINE MIR -20 242 1 313 307 62 22 chr9 4437345 4437524 -137833920 + MIR SINE MIR 21 206 -56 710 285 60 4 chr9 4437596 4437828 -137833616 + MIR SINE MIR 2 252 -10 347 0 23 0 chr9 4437902 4437945 -137833499 + (CA)n Simple_repeat Simple_repeat 1 44 0 475 328 39 6 chr9 4439866 4440046 -137831398 - MIR3 SINE MIR -3 205 20 598 209 99 41 chr9 4441218 4441390 -137830054 + MER5A DNA MER1_type 1 182 -7 249 151 19 38 chr9 4441500 4441553 -137829891 - MER5B DNA MER1_type 0 178 127 630 233 5 87 chr9 4441554 4441760 -137829684 + MER20 DNA MER1_type 31 219 0 2808 139 90 25 chr9 4441988 4442512 -137828932 + LTR64 LTR ERVK 1 558 0 2084 103 3 14 chr9 4445706 4445997 -137825447 - AluSg SINE Alu -22 288 1 1284 335 159 23 chr9 4446172 4447290 -137824154 + L3 LINE CR1 105 1374 -203 2151 148 56 8 chr9 4447381 4447739 -137823705 + THE1C LTR MaLR 1 375 0 234 349 70 0 chr9 4447948 4448034 -137823410 - L2 LINE L2 -48 3224 3133 7676 52 1 0 chr9 4449970 4450970 -137820474 + L1PA6 LINE L1 5161 6154 0 3259 177 39 16 chr9 4452678 4453294 -137818150 - L1MB5 LINE L1 0 6174 5545 1868 163 7 3 chr9 4453315 4453609 -137817835 - AluSx SINE Alu -17 295 1 455 232 20 0 chr9 4453856 4453955 -137817489 + L2 LINE L2 3141 3241 -31 22 0 0 0 chr9 4454064 4454086 -137817358 + AT_rich Low_complexity Low_complexity 1 22 0 287 321 47 0 chr9 4454571 4454677 -137816767 + L2 LINE L2 3188 3298 -15 210 262 24 24 chr9 4456942 4457026 -137814418 + GA-rich Low_complexity Low_complexity 1 84 0 570 221 15 113 chr9 4457205 4457400 -137814044 - MER91B DNA MER1_type -14 176 1 904 230 6 11 chr9 4457530 4457708 -137813736 + MER45A DNA AcHobo 1 177 -1 896 269 114 21 chr9 4458820 4459063 -137812381 - L1MCc LINE L1 -4887 1536 1242 2345 87 0 7 chr9 4459063 4459372 -137812072 + AluY SINE Alu 5 311 0 896 269 114 21 chr9 4459372 4459515 -137811929 - L1MCc LINE L1 -5181 1242 1114 318 288 154 34 chr9 4459913 4460165 -137811279 - L1MCc LINE L1 -5994 429 209 234 0 0 0 chr9 4460165 4460191 -137811253 + (TG)n Simple_repeat Simple_repeat 1 26 0 * 411 21 0 0 chr9 4460190 4460238 -137811206 + (GA)n Simple_repeat Simple_repeat 1 48 0 318 288 154 34 chr9 4460191 4460336 -137811108 - L1MCc LINE L1 -6214 209 37 351 0 0 0 chr9 4461380 4461419 -137810025 + (TG)n Simple_repeat Simple_repeat 2 40 0 220 402 0 8 chr9 4462099 4462216 -137809228 + MIR3 SINE MIR 77 192 -16 380 214 87 8 chr9 4462281 4462407 -137809037 + MER117 DNA MER1_type 47 182 -15 590 228 142 14 chr9 4463993 4464312 -137807132 - MLT1J2 LTR MaLR 0 450 60 1579 187 33 19 chr9 4464983 4465347 -137806097 + MER96B DNA MER1_type? 49 417 0 371 256 13 0 chr9 4465351 4465429 -137806015 + L2 LINE L2 3194 3272 0 201 74 0 0 chr9 4465880 4465907 -137805537 + (T)n Simple_repeat Simple_repeat 1 27 0 202 330 121 0 chr9 4466301 4466392 -137805052 + MIR SINE MIR 59 160 -102 194 392 21 10 chr9 4467474 4467571 -137803873 - L3 LINE CR1 -45 1532 1435 616 182 224 16 chr9 4467573 4468079 -137803365 - LTR50 LTR ERVL -2 793 12 361 291 99 7 chr9 4468169 4468320 -137803124 - L3 LINE CR1 -321 1256 1092 423 291 70 62 chr9 4468324 4468587 -137802857 + L1ME4a LINE L1 5573 5843 -278 1654 183 0 7 chr9 4468587 4468877 -137802567 - AluJb SINE Alu -24 288 1 423 291 70 62 chr9 4468877 4469125 -137802319 + L1ME4a LINE L1 5843 6088 -33 342 345 63 17 chr9 4469244 4469418 -137802026 - L3 LINE CR1 -503 1074 893 365 271 7 45 chr9 4469492 4469508 -137801936 - L1MA10 LINE L1 -1 6333 6318 1683 222 19 60 chr9 4469508 4470021 -137801423 - L1ME2 LINE L1 -10 6154 5663 2075 83 3 31 chr9 4470052 4470365 -137801079 - AluY SINE Alu 0 305 1 736 185 37 0 chr9 4470401 4470536 -137800908 - L1MA10 LINE L1 -15 6319 6180 185 0 40 0 chr9 4470536 4470561 -137800883 + (TTG)n Simple_repeat Simple_repeat 2 27 0 269 313 37 37 chr9 4470670 4470804 -137800640 + MIR3 SINE MIR 66 199 -9 377 204 82 61 chr9 4471770 4471917 -137799527 - MIR SINE MIR -10 252 103 334 320 79 28 chr9 4472189 4472367 -137799077 + MER5A DNA MER1_type 2 188 -1 190 222 111 16 chr9 4472944 4473007 -137798437 + L3 LINE CR1 305 373 -1204 205 171 0 24 chr9 4475026 4475067 -137796377 + (CA)n Simple_repeat Simple_repeat 2 41 0 273 197 0 0 chr9 4475105 4475171 -137796273 + (CA)n Simple_repeat Simple_repeat 1 66 0 298 281 39 55 chr9 4476603 4476731 -137794713 + MIR3 SINE MIR 73 198 -10 216 97 0 0 chr9 4476794 4476825 -137794619 + (CA)n Simple_repeat Simple_repeat 2 32 0 324 286 71 42 chr9 4477512 4477823 -137793621 - HAL1b LINE L1 -630 718 399 304 203 63 0 chr9 4478256 4478335 -137793109 - LTR50 LTR ERVL 0 795 712 25 65 0 0 chr9 4478336 4478382 -137793062 + AT_rich Low_complexity Low_complexity 1 46 0 21 95 0 0 chr9 4478389 4478452 -137792992 + AT_rich Low_complexity Low_complexity 1 63 0 596 252 5 48 chr9 4478843 4479049 -137792395 - LTR41 LTR ERVL -576 197 1 309 345 81 43 chr9 4480552 4480761 -137790683 - L3 LINE CR1 -1313 264 48 1300 132 10 29 chr9 4480897 4481101 -137790343 - AluSx SINE Alu -69 243 44 442 325 101 38 chr9 4481240 4481606 -137789838 - L1 LINE L1 -968 5178 4790 268 277 18 9 chr9 4482134 4482246 -137789198 - L1 LINE L1 -2238 3908 3796 2370 89 0 7 chr9 4482703 4483006 -137788438 - AluY SINE Alu -10 301 1 418 252 49 34 chr9 4483017 4483209 -137788235 - MIR SINE MIR -57 205 17 1948 58 8 0 chr9 4484174 4484435 -137787009 + L1PA5 LINE L1 5739 6001 -153 318 139 0 0 chr9 4484435 4484507 -137786937 + (A)n Simple_repeat Simple_repeat 1 72 0 320 272 40 24 chr9 4484516 4484641 -137786803 + L1M4 LINE L1 3073 3199 -2947 205 286 0 0 chr9 4484730 4484800 -137786644 + C-rich Low_complexity Low_complexity 1 70 0 210 37 0 0 chr9 4484829 4484856 -137786588 + (C)n Simple_repeat Simple_repeat 1 27 0 231 103 73 0 chr9 4484856 4484924 -137786520 + A-rich Low_complexity Low_complexity 3 75 0 2258 139 38 12 chr9 4485708 4486125 -137785319 + MSTA LTR MaLR 1 428 0 373 327 108 75 chr9 4486292 4486653 -137784791 + L2 LINE L2 2900 3272 0 201 222 19 19 chr9 4488269 4488323 -137783121 + GA-rich Low_complexity Low_complexity 1 54 0 204 303 40 61 chr9 4488398 4488497 -137782947 + L2 LINE L2 3168 3264 -8 303 319 42 25 chr9 4488745 4488864 -137782580 - L2 LINE L2 -4 3309 3189 24 0 0 0 chr9 4489603 4489627 -137781817 + AT_rich Low_complexity Low_complexity 1 24 0 1516 166 69 42 chr9 4489681 4489970 -137781474 + AluJo SINE Alu 1 297 -15 23 0 0 0 chr9 4490589 4490612 -137780832 + AT_rich Low_complexity Low_complexity 1 23 0 204 296 0 42 chr9 4490745 4490816 -137780628 + MIR SINE MIR 14 81 -181 566 274 121 21 chr9 4491018 4491208 -137780236 + MIR SINE MIR 4 212 -50 1717 172 0 40 chr9 4491210 4491512 -137779932 + AluJo SINE Alu 1 290 -22 21 36 0 0 chr9 4491583 4491611 -137779833 + AT_rich Low_complexity Low_complexity 1 28 0 198 143 0 0 chr9 4491650 4491685 -137779759 + (CA)n Simple_repeat Simple_repeat 2 36 0 395 169 96 0 chr9 4491705 4491788 -137779656 - Tigger3b DNA MER2_type 0 1231 1141 973 98 93 27 chr9 4491797 4491980 -137779464 + THE1C LTR MaLR 181 375 0 * 5083 132 56 33 chr9 4491980 4492290 -137779154 - Tigger3b DNA MER2_type -2008 1020 719 2062 84 0 4 chr9 4492290 4492551 -137778893 - AluY SINE Alu -13 298 39 5083 132 56 33 chr9 4492551 4493237 -137778207 - Tigger3b DNA MER2_type -2309 719 1 831 172 28 0 chr9 4493249 4493394 -137778050 - MIR SINE MIR -112 150 2 24 32 0 0 chr9 4493911 4493942 -137777502 + AT_rich Low_complexity Low_complexity 1 31 0 311 282 26 43 chr9 4494373 4494490 -137776954 + L1ME LINE L1 5448 5562 -559 2281 79 9 3 chr9 4495030 4495360 -137776084 - L1MA5A LINE L1 0 6297 5966 485 284 102 49 chr9 4495889 4496114 -137775330 - MIR SINE MIR -6 256 20 1938 142 0 0 chr9 4496867 4497176 -137774268 + AluSx SINE Alu 1 309 0 1675 153 63 137 chr9 4499288 4499792 -137771652 - MLT1C LTR MaLR 0 467 1 293 211 9 114 chr9 4500076 4500190 -137771254 + MIR SINE MIR 90 191 -71 294 294 104 51 chr9 4501200 4501405 -137770039 + MIR SINE MIR 9 212 -50 871 225 18 31 chr9 4502581 4502803 -137768641 + MER20 DNA MER1_type 1 219 0 25 0 0 0 chr9 4502836 4502861 -137768583 + AT_rich Low_complexity Low_complexity 1 25 0 21 0 0 0 chr9 4503365 4503386 -137768058 + AT_rich Low_complexity Low_complexity 1 21 0 1737 244 175 38 chr9 4504117 4504962 -137766482 + L2 LINE L2 2064 3022 -291 632 222 26 31 chr9 4507377 4507571 -137763873 + MLT1J2 LTR MaLR 1 193 -257 230 239 256 26 chr9 4507598 4507715 -137763729 + MLT1J2 LTR MaLR 266 409 -41 287 196 0 72 chr9 4507986 4508083 -137763361 - L1MC5 LINE L1 -30 7931 7842 390 325 149 48 chr9 4509862 4510277 -137761167 + L2 LINE L2 2816 3272 0 330 294 71 8 chr9 4510320 4510446 -137760998 - MER94 DNA DNA 0 134 1 21 36 0 0 chr9 4512020 4512048 -137759396 + AT_rich Low_complexity Low_complexity 1 28 0 556 194 276 0 chr9 4512616 4512750 -137758694 + MER5B DNA MER1_type 6 176 -2 402 328 67 36 chr9 4513214 4513680 -137757764 - L1ME3 LINE L1 -238 5924 5445 358 308 122 65 chr9 4518103 4518626 -137752818 - L1M2 LINE L1 -5481 1368 816 198 286 36 36 chr9 4519391 4519447 -137751997 - L2 LINE L2 -12 3260 3205 193 349 45 0 chr9 4521513 4521579 -137749865 + L2 LINE L2 3235 3303 -10 378 0 0 0 chr9 4521758 4521800 -137749644 + (CA)n Simple_repeat Simple_repeat 2 43 0 648 266 87 57 chr9 4523325 4523674 -137747770 + L1ME4a LINE L1 5415 5752 -369 24 0 0 0 chr9 4523674 4523698 -137747746 + AT_rich Low_complexity Low_complexity 1 24 0 648 266 87 57 chr9 4523698 4524016 -137747428 + L1ME4a LINE L1 5752 6119 -2 223 260 117 0 chr9 4524930 4525007 -137746437 - MIR SINE MIR -66 142 57 234 105 0 0 chr9 4525755 4525793 -137745651 + (TG)n Simple_repeat Simple_repeat 2 39 0 21 36 0 0 chr9 4526334 4526362 -137745082 + AT_rich Low_complexity Low_complexity 1 28 0 206 300 29 0 chr9 4527330 4527400 -137744044 - MIR SINE MIR -79 129 58 459 218 143 0 chr9 4528077 4528224 -137743220 - MER104 DNA Tc2 -3 177 10 344 311 0 30 chr9 4528267 4528402 -137743042 + L2 LINE L2 2936 3066 -206 263 261 148 106 chr9 4529328 4529470 -137741974 + MIR SINE MIR 2 149 -113 2562 116 57 7 chr9 4529485 4529892 -137741552 + MSTA LTR MaLR 1 427 -1 8671 166 23 4 chr9 4529894 4531495 -137739949 + MSTA-int LTR MaLR 15 1645 -6 2432 142 54 5 chr9 4531500 4531908 -137739536 + MSTA LTR MaLR 1 428 0 285 307 59 50 chr9 4531908 4532009 -137739435 + MIR SINE MIR 161 262 0 23 0 0 0 chr9 4532180 4532203 -137739241 + AT_rich Low_complexity Low_complexity 1 23 0 240 320 68 19 chr9 4532708 4532811 -137738633 - L2 LINE L2 -24 3248 3141 279 213 12 25 chr9 4532858 4532938 -137738506 - MER116 DNA Mariner -1 79 1 654 214 26 7 chr9 4532979 4533133 -137738311 + MIR SINE MIR 50 206 -56 362 214 401 6 chr9 4533309 4533491 -137737953 - L1MC4 LINE L1 -146 7896 7643 777 190 107 19 chr9 4533626 4533831 -137737613 + MIR SINE MIR 13 235 -27 450 0 0 0 chr9 4533963 4534013 -137737431 + (CA)n Simple_repeat Simple_repeat 2 51 0 278 250 48 73 chr9 4534569 4534728 -137736716 + MIR SINE MIR 49 212 -50 23 0 0 0 chr9 4535357 4535380 -137736064 + AT_rich Low_complexity Low_complexity 1 23 0 324 261 26 17 chr9 4536554 4536669 -137734775 + MER103 DNA DNA 4 119 -47 262 225 31 132 chr9 4536977 4537106 -137734338 - MER5B DNA MER1_type 0 178 63 846 238 8 10 chr9 4538734 4538964 -137732480 + MIR SINE MIR 20 247 -15 195 237 0 0 chr9 4539435 4539473 -137731971 + L2 LINE L2 3231 3268 -4 1678 138 43 72 chr9 4539735 4540082 -137731362 - MER1B DNA MER1_type 0 337 1 1593 165 0 0 chr9 4540237 4540491 -137730953 + AluJb SINE Alu 59 312 0 2300 99 0 3 chr9 4540934 4541237 -137730207 - AluSq SINE Alu -11 302 1 21 0 0 0 chr9 4542780 4542801 -137728643 + AT_rich Low_complexity Low_complexity 1 21 0 2068 150 23 51 chr9 4543210 4543370 -137728074 - L1MA9 LINE L1 0 6312 6149 180 77 0 0 chr9 4543370 4543396 -137728048 + (TG)n Simple_repeat Simple_repeat 2 27 0 2068 150 23 51 chr9 4543396 4543422 -137728022 - L1MA9 LINE L1 -163 6149 6124 2489 75 7 0 chr9 4543422 4543729 -137727715 + AluSx SINE Alu 1 309 -3 2068 150 23 51 chr9 4543729 4543974 -137727470 - L1MA9 LINE L1 -188 6124 5892 197 226 28 19 chr9 4545821 4545927 -137725517 + CT-rich Low_complexity Low_complexity 2 108 0 22 0 0 0 chr9 4547953 4547975 -137723469 + AT_rich Low_complexity Low_complexity 1 22 0 215 275 52 136 chr9 4548359 4548785 -137722659 + L2 LINE L2 2859 3248 -24 201 156 0 0 chr9 4549239 4549271 -137722173 + (CTA)n Simple_repeat Simple_repeat 1 32 0 327 285 85 15 chr9 4549331 4549461 -137721983 - MIR SINE MIR -14 248 110 180 111 0 0 chr9 4549988 4550015 -137721429 + (ATG)n Simple_repeat Simple_repeat 2 28 0 185 250 0 0 chr9 4550641 4550685 -137720759 + L2 LINE L2 3212 3255 -17 620 270 55 0 chr9 4550837 4551000 -137720444 - MIR3 SINE MIR -3 205 34 225 269 224 13 chr9 4552344 4552500 -137718944 + L3 LINE CR1 1370 1558 -19 352 288 54 18 chr9 4552627 4552738 -137718706 + MIR3 SINE MIR 83 197 -11 388 275 231 16 chr9 4552790 4553087 -137718357 + L1ME4a LINE L1 4224 4596 -1550 868 200 41 45 chr9 4553087 4553307 -137718137 - MER20 DNA MER1_type 0 219 1 388 275 231 16 chr9 4553307 4553329 -137718115 + L1ME4a LINE L1 4596 4612 -1534 2097 133 0 0 chr9 4553419 4553705 -137717739 + AluSx SINE Alu 1 286 -26 934 276 100 39 chr9 4553927 4554488 -137716956 - MLT1G1 LTR MaLR 0 595 1 308 292 118 6 chr9 4554592 4554753 -137716691 + L1ME4a LINE L1 5120 5298 -848 289 257 62 35 chr9 4555027 4555171 -137716273 + L1ME4a LINE L1 5764 5911 -210 817 185 21 48 chr9 4555845 4556034 -137715410 - MER5A DNA MER1_type -5 184 1 181 415 0 12 chr9 4556554 4556636 -137714808 - L2 LINE L2 -2 3270 3190 787 189 7 7 chr9 4556993 4557136 -137714308 + MER5A DNA MER1_type 1 143 -46 529 337 71 68 chr9 4558827 4559237 -137712207 - L2 LINE L2 -65 3248 2838 224 297 127 34 chr9 4559256 4559374 -137712070 + L2 LINE L2 3140 3268 -4 2308 122 0 0 chr9 4559574 4559885 -137711559 + AluSx SINE Alu 1 311 -1 1435 156 30 117 chr9 4561099 4561432 -137710012 + AluJo SINE Alu 1 304 -8 28 0 0 0 chr9 4561434 4561462 -137709982 + AT_rich Low_complexity Low_complexity 1 28 0 1305 193 18 115 chr9 4561714 4561813 -137709631 - MLT1C LTR MaLR 0 467 360 2059 110 10 36 chr9 4561813 4562121 -137709323 - AluSx SINE Alu -10 302 3 1305 193 18 115 chr9 4562121 4562504 -137708940 - MLT1C LTR MaLR -107 360 18 2167 89 26 13 chr9 4562715 4563019 -137708425 + AluY SINE Alu 1 308 -3 260 328 117 16 chr9 4563202 4563330 -137708114 - MIR3 SINE MIR -32 176 36 279 133 0 0 chr9 4563382 4563427 -137708017 + (CA)n Simple_repeat Simple_repeat 1 45 0 400 335 90 13 chr9 4563486 4563641 -137707803 - MIR3 SINE MIR -12 196 30 434 347 78 25 chr9 4563706 4563948 -137707496 + MIR SINE MIR 2 256 -6 2368 95 0 0 chr9 4565296 4565601 -137705843 + AluSq SINE Alu 1 305 -8 323 297 124 59 chr9 4565815 4566105 -137705339 - L2 LINE L2 -961 2353 2045 520 320 117 17 chr9 4566125 4566356 -137705088 + MIR SINE MIR 8 261 -1 256 316 175 18 chr9 4566641 4566812 -137704632 + MIR3 SINE MIR 4 201 -7 287 258 174 45 chr9 4567224 4567356 -137704088 - MIR3 SINE MIR -30 178 30 230 268 73 12 chr9 4567530 4567612 -137703832 - MIR SINE MIR -13 249 163 375 306 54 0 chr9 4567619 4567730 -137703714 + L2 LINE L2 3153 3269 -3 255 333 8 58 chr9 4567734 4567854 -137703590 - MIR SINE MIR -121 141 28 282 95 0 0 chr9 4568316 4568358 -137703086 + (CA)n Simple_repeat Simple_repeat 2 43 0 272 309 0 24 chr9 4569548 4569632 -137701812 + MIR SINE MIR 17 98 -110 1349 187 50 39 chr9 4569651 4570010 -137701434 + L1MC4 LINE L1 7680 8042 0 218 136 45 0 chr9 4572734 4572778 -137698666 + (TGAA)n Simple_repeat Simple_repeat 2 47 0 446 300 17 11 chr9 4573034 4573214 -137698230 - Charlie8 DNA MER1_type -2215 202 22 369 0 0 0 chr9 4573699 4573740 -137697704 + (CA)n Simple_repeat Simple_repeat 2 42 0 918 176 31 6 chr9 4573748 4573907 -137697537 - AluJb SINE Alu -21 291 129 267 103 0 0 chr9 4574051 4574090 -137697354 + (CA)n Simple_repeat Simple_repeat 2 40 0 497 303 85 0 chr9 4575929 4576094 -137695350 - MIR SINE MIR -37 225 47 378 268 72 14 chr9 4576356 4576494 -137694950 - L1ME4a LINE L1 -12 6109 5964 269 303 0 91 chr9 4576643 4576754 -137694690 - L1ME4a LINE L1 -344 5777 5686 2147 137 0 0 chr9 4576754 4577061 -137694383 - AluSq SINE Alu -6 307 1 269 303 0 91 chr9 4577061 4577124 -137694320 - L1ME4a LINE L1 -435 5686 5619 396 0 0 0 chr9 4577268 4577312 -137694132 + (CAAAA)n Simple_repeat Simple_repeat 2 45 0 190 293 207 0 chr9 4577481 4577539 -137693905 + MIR SINE MIR 37 106 -102 30 0 0 0 chr9 4579007 4579037 -137692407 + AT_rich Low_complexity Low_complexity 1 30 0 326 220 230 0 chr9 4579560 4579660 -137691784 - MER94 DNA DNA -3 131 9 2318 95 0 0 chr9 4579765 4580060 -137691384 + AluSx SINE Alu 1 295 -17 268 251 137 69 chr9 4580511 4580686 -137690758 + MIR SINE MIR 65 251 -11 245 219 114 49 chr9 4581629 4581752 -137689692 + LTR67 LTR ERVL 2 132 -425 * 404 259 126 74 chr9 4581745 4582158 -137689286 + MLT1H LTR MaLR 52 547 -2 274 170 0 21 chr9 4582410 4582457 -137688987 + Charlie8 DNA MER1_type 231 276 -2141 229 158 0 26 chr9 4582848 4582886 -137688558 - MLT1F LTR MaLR -504 38 2 228 279 14 40 chr9 4583019 4583107 -137688337 - MIR SINE MIR -55 153 68 245 333 130 25 chr9 4583222 4583384 -137688060 + L3 LINE CR1 1204 1382 -195 389 288 68 8 chr9 4583672 4583804 -137687640 + MIR3 SINE MIR 49 188 -20 1886 226 51 31 chr9 4585099 4585599 -137685845 - L1ME1 LINE L1 -5 6161 5651 342 256 0 43 chr9 4585692 4585809 -137685635 - LTR33 LTR ERVL 0 521 410 547 333 0 6 chr9 4585893 4586073 -137685371 - LTR33 LTR ERVL -307 214 36 27380 32 3 1 chr9 4586142 4590036 -137681408 - L1PA3 LINE L1 -3 6152 2247 11270 48 1 1 chr9 4590037 4591421 -137680023 + L1PA3 LINE L1 854 2237 -3909 388 157 43 0 chr9 4591423 4591493 -137679951 + HsTC2 DNA Tc2 1823 1895 -3 31 0 0 0 chr9 4592005 4592036 -137679408 + AT_rich Low_complexity Low_complexity 1 31 0 207 114 0 0 chr9 4592757 4592792 -137678652 + (CATG)n Simple_repeat Simple_repeat 2 36 0 186 250 0 0 chr9 4592946 4593002 -137678442 + A-rich Low_complexity Low_complexity 1 56 0 423 346 118 36 chr9 4593009 4593291 -137678153 - L2 LINE L2 -340 2974 2717 1460 192 96 16 chr9 4593291 4593603 -137677841 + MER58B DNA MER1_type 5 341 0 423 346 118 36 chr9 4593603 4593877 -137677567 - L2 LINE L2 -597 2717 2372 511 309 22 45 chr9 4593958 4594181 -137677263 + Tigger8 DNA MER2_type 46 263 -403 207 0 0 0 chr9 4594182 4594205 -137677239 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 2124 95 3 11 chr9 4594213 4594497 -137676947 - AluSx SINE Alu -30 282 1 21 0 0 0 chr9 4594585 4594606 -137676838 + AT_rich Low_complexity Low_complexity 1 21 0 3925 156 2 2 chr9 4594655 4595265 -137676179 + L1PA15-16 LINE L1 25 634 -6215 6745 155 101 87 chr9 4595265 4596936 -137674508 + pTR5 LTR ERV1 745 2438 0 13646 195 13 47 chr9 4596938 4601991 -137669453 + L1PA15-16 LINE L1 628 5851 -1094 1819 140 4 11 chr9 4601991 4602269 -137669175 + AluSx SINE Alu 1 276 -36 2078 85 0 29 chr9 4602269 4602550 -137668894 - AluY SINE Alu 0 311 39 13646 195 13 47 chr9 4602550 4602564 -137668880 + L1PA15-16 LINE L1 5850 5863 -1082 295 40 20 20 chr9 4602564 4602614 -137668830 + (TAAAA)n Simple_repeat Simple_repeat 2 51 0 13646 195 13 47 chr9 4602614 4603666 -137667778 + L1PA15-16 LINE L1 5863 6399 -546 3407 129 33 25 chr9 4603689 4604241 -137667203 + L1PA16 LINE L1 5602 6157 -9 396 314 70 39 chr9 4604268 4604526 -137666918 + Tigger8 DNA MER2_type 398 663 -3 1979 117 21 3 chr9 4604773 4605063 -137666381 + AluSq SINE Alu 1 295 -18 1823 115 15 8 chr9 4605071 4605331 -137666113 + AluSx SINE Alu 39 300 -12 751 236 98 94 chr9 4605392 4605893 -137665551 + MLT1K LTR MaLR 38 540 -48 183 80 0 0 chr9 4606106 4606131 -137665313 + (TTTG)n Simple_repeat Simple_repeat 3 27 0 443 322 17 51 chr9 4607703 4607939 -137663505 - MIR SINE MIR -26 236 9 230 219 37 49 chr9 4609213 4609295 -137662149 - Charlie7 DNA MER1_type -2503 109 29 244 284 68 0 chr9 4609303 4609377 -137662067 - MIR3 SINE MIR -48 160 82 427 267 65 29 chr9 4609419 4609603 -137661841 + MER20B DNA MER1_type 5 198 -21 1051 173 99 15 chr9 4609821 4610023 -137661421 - MER20 DNA MER1_type 0 219 1 361 200 35 35 chr9 4610169 4610254 -137661190 + L2 LINE L2 3227 3311 -2 3013 201 53 5 chr9 4611696 4612318 -137659126 + L1MB8 LINE L1 5526 6177 -1 712 286 85 69 chr9 4612504 4613167 -137658277 - L2 LINE L2 0 3272 2596 281 271 106 40 chr9 4613305 4613456 -137657988 + L2 LINE L2 2927 3087 -185 1115 180 67 0 chr9 4613575 4613769 -137657675 + MER3 DNA MER1_type 2 208 -1 315 322 51 8 chr9 4613769 4613887 -137657557 + L2 LINE L2 3191 3313 0 385 340 106 7 chr9 4613927 4614068 -137657376 - L2 LINE L2 0 3313 3159 315 71 0 0 chr9 4615452 4615494 -137655950 + (TG)n Simple_repeat Simple_repeat 2 43 0 2365 88 0 25 chr9 4616328 4616645 -137654799 + AluY SINE Alu 1 309 -2 25 0 0 0 chr9 4617459 4617484 -137653960 + AT_rich Low_complexity Low_complexity 1 25 0 496 288 118 9 chr9 4618181 4618410 -137653034 + L2 LINE L2 2339 2592 -722 2445 56 17 0 chr9 4618427 4618715 -137652729 - AluY SINE Alu -18 293 1 969 154 32 21 chr9 4618717 4618905 -137652539 + MER3 DNA MER1_type 16 205 -4 364 301 156 6 chr9 4619022 4619195 -137652249 + L2 LINE L2 3111 3309 -4 3082 190 134 40 chr9 4619967 4620750 -137650694 + L1MC4 LINE L1 6701 7573 -469 576 197 30 53 chr9 4620750 4620882 -137650562 + FLAM_A SINE Alu 2 130 -3 3082 190 134 40 chr9 4620882 4620955 -137650489 + L1MC4 LINE L1 7573 7638 -404 999 164 0 0 chr9 4620970 4621122 -137650322 + AluJb SINE Alu 131 282 -30 180 0 0 0 chr9 4621122 4621142 -137650302 + (TTAA)n Simple_repeat Simple_repeat 2 21 0 904 167 0 147 chr9 4621216 4621494 -137649950 + L1MC4 LINE L1 7819 7995 0 223 201 91 0 chr9 4623387 4623452 -137647992 + MIR SINE MIR 36 111 -97 309 353 10 0 chr9 4624313 4624415 -137647029 + MIR3 SINE MIR 85 187 -21 22 56 0 0 chr9 4625096 4625132 -137646312 + AT_rich Low_complexity Low_complexity 1 36 0 439 261 6 72 chr9 4625154 4625324 -137646120 - MIR SINE MIR -49 213 56 216 333 128 8 chr9 4626427 4626544 -137644900 + L2 LINE L2 3141 3271 -1 484 285 40 47 chr9 4626776 4627012 -137644432 + MIR SINE MIR 20 257 -5 192 77 0 0 chr9 4628336 4628362 -137643082 + (A)n Simple_repeat Simple_repeat 1 26 0 377 269 0 0 chr9 4629145 4629253 -137642191 + L1MC4a LINE L1 5809 5916 -1892 24 32 0 0 chr9 4630303 4630334 -137641110 + AT_rich Low_complexity Low_complexity 1 31 0 376 269 75 78 chr9 4631022 4631063 -137640381 + L1MDa LINE L1 1157 1197 -5343 905 207 12 0 chr9 4631063 4631227 -137640217 + FRAM SINE Alu 1 166 0 376 269 75 78 chr9 4631227 4631453 -137639991 + L1MDa LINE L1 1197 1423 -5117 230 259 147 42 chr9 4631523 4631666 -137639778 + L1MDa LINE L1 1490 1647 -4883 250 266 72 0 chr9 4631789 4631928 -137639516 + HAL1b LINE L1 437 1669 -785 1917 164 0 16 chr9 4632233 4632550 -137638894 + AluJo SINE Alu 1 312 0 243 297 72 9 chr9 4632618 4632729 -137638715 + MIR SINE MIR 65 182 -80 8877 124 21 9 chr9 4633479 4634913 -137636531 - Tigger1 DNA MER2_type -967 1451 1 220 231 0 0 chr9 4634935 4634974 -137636470 - MIR SINE MIR -146 116 78 2183 97 0 10 chr9 4635154 4635454 -137635990 + AluSc SINE Alu 1 297 -12 348 127 0 0 chr9 4636322 4636377 -137635067 + (A)n Simple_repeat Simple_repeat 1 55 0 274 190 69 0 chr9 4636815 4636873 -137634571 - L2 LINE L2 -2 3311 3250 480 270 103 88 chr9 4637159 4637615 -137633829 + L1ME4a LINE L1 5517 5979 -142 1806 23 0 0 chr9 4639079 4639296 -137632148 - L1PA4 LINE L1 -255 5900 5684 1430 6 12 6 chr9 4639298 4639467 -137631977 + L1PA4 LINE L1 5986 6155 0 2216 129 3 40 chr9 4640259 4640609 -137630835 - MER1B DNA MER1_type 0 337 1 952 57 0 0 chr9 4640884 4641006 -137630438 + L1PA13 LINE L1 6036 6157 -6 201 121 0 0 chr9 4641085 4641118 -137630326 + (TG)n Simple_repeat Simple_repeat 2 34 0 1021 160 41 78 chr9 4641466 4641759 -137629685 + L1MA4 LINE L1 6016 6297 -3 1901 161 0 22 chr9 4641804 4642121 -137629323 - AluSx SINE Alu -2 310 1 1028 162 80 51 chr9 4642782 4643096 -137628348 + MER33 DNA MER1_type 1 323 -1 243 146 0 0 chr9 4643517 4643558 -137627886 + (CA)n Simple_repeat Simple_repeat 2 42 0 245 243 122 27 chr9 4643723 4643797 -137627647 + L3b LINE CR1 1198 1278 -305 233 402 37 0 chr9 4643813 4643920 -137627524 + L3b LINE CR1 1412 1522 -61 2286 120 0 3 chr9 4644712 4645013 -137626431 - AluSq SINE Alu -13 300 1 730 101 34 0 chr9 4645812 4645931 -137625513 + L1MA5 LINE L1 6176 6298 -2 747 130 130 0 chr9 4646232 4646355 -137625089 + AluSg SINE Alu 1 139 -171 3352 170 89 60 chr9 4747346 4748325 -137523119 + MER51B-int LTR ERV1 6809 7815 -1 2085 109 112 3 chr9 4748327 4748667 -137522777 + MER51B LTR ERV1 1 377 0 563 133 0 0 chr9 4748667 4748750 -137522694 + U6 snRNA snRNA 19 101 -6 182 37 37 0 chr9 4748799 4748826 -137522618 + (TAAAAA)n Simple_repeat Simple_repeat 5 32 0 1027 38 25 19 chr9 4749326 4749484 -137521960 + (TTTC)n Simple_repeat Simple_repeat 2 160 0 996 130 0 7 chr9 4749585 4749731 -137521713 - AluSq/x SINE Alu -168 145 1 25 31 0 0 chr9 4750511 4750543 -137520901 + AT_rich Low_complexity Low_complexity 1 32 0 249 254 0 0 chr9 4750569 4750640 -137520804 + GA-rich Low_complexity Low_complexity 2 72 0 11324 164 53 59 chr9 4751957 4752590 -137518854 - L1 LINE L1 -1286 6279 5644 1386 117 5 33 chr9 4752590 4752803 -137518641 + AluSp SINE Alu 90 296 -17 11324 164 53 59 chr9 4752803 4753737 -137517707 - L1 LINE L1 -1921 5644 4706 2386 103 3 0 chr9 4753737 4754047 -137517397 - AluSp SINE Alu -1 312 2 11324 164 53 59 chr9 4754047 4757281 -137514163 - L1 LINE L1 -2859 4706 1280 1347 108 8 121 chr9 4757283 4757532 -137513912 + AluSg/x SINE Alu 84 304 -8 2005 88 4 0 chr9 4757638 4757888 -137513556 - AluSg SINE Alu -59 251 1 269 264 86 46 chr9 4758783 4758980 -137512464 - L1ME4a LINE L1 -211 5910 5706 212 359 83 28 chr9 4760162 4760307 -137511137 + MER5B DNA MER1_type 26 178 0 201 380 62 0 chr9 4760595 4760708 -137510736 - L2 LINE L2 -9 3263 3144 23 0 0 0 chr9 4761028 4761051 -137510393 + AT_rich Low_complexity Low_complexity 1 23 0 864 183 27 40 chr9 4761067 4761291 -137510153 - MER74B LTR ERVL -347 275 55 535 183 67 25 chr9 4761295 4761415 -137510029 - MER45 DNA AcHobo -914 126 2 338 330 65 25 chr9 4761772 4761972 -137509472 - L2 LINE L2 -498 2816 2609 2191 100 20 13 chr9 4762890 4763018 -137508426 + AluSc SINE Alu 1 127 -182 2302 106 0 6 chr9 4763018 4763330 -137508114 + AluSg SINE Alu 1 310 0 2191 100 20 13 chr9 4763330 4763502 -137507942 + AluSc SINE Alu 127 303 -6 475 152 13 0 chr9 4763606 4763685 -137507759 + MER33 DNA MER1_type 1 80 -244 216 309 30 19 chr9 4764065 4764214 -137507230 + GA-rich Low_complexity Low_complexity 3 243 0 324 0 0 0 chr9 4766220 4766256 -137505188 + (TG)n Simple_repeat Simple_repeat 2 37 0 2416 72 0 0 chr9 4766634 4766954 -137504490 + AluY SINE Alu 1 311 0 436 271 107 11 chr9 4767873 4768061 -137503383 - MIR SINE MIR -39 223 23 243 316 109 1 chr9 4768121 4768238 -137503206 + MIR SINE MIR 3 128 -80 339 237 21 63 chr9 4768435 4768580 -137502864 + MLT1K LTR MaLR 147 280 -335 1257 160 36 14 chr9 4768938 4769157 -137502287 - AluJo SINE Alu -3 309 86 13907 89 13 1 chr9 4769990 4772042 -137499402 - L1P LINE L1 -1423 4723 2646 395 198 79 141 chr9 4772329 4772556 -137498888 - MER102a DNA MER1_type -6 324 112 378 0 0 0 chr9 4772593 4772635 -137498809 + (CA)n Simple_repeat Simple_repeat 1 42 0 1532 157 16 12 chr9 4772829 4773084 -137498360 + AluJo SINE Alu 40 295 -17 3646 220 142 9 chr9 4773160 4774339 -137497105 - L1MC5 LINE L1 -28 8014 6699 375 260 7 89 chr9 4774355 4774501 -137496943 - L1MC4 LINE L1 -1438 6604 6471 381 284 149 0 chr9 4775178 4775319 -137496125 + MER5B DNA MER1_type 1 162 -16 3412 162 25 7 chr9 4775596 4776190 -137495254 - MER6A DNA MER2_type 0 605 1 246 235 0 0 chr9 4777657 4777708 -137493736 + CT-rich Low_complexity Low_complexity 2 52 0 241 330 28 0 chr9 4778328 4778437 -137493007 + GA-rich Low_complexity Low_complexity 3 114 0 1908 125 15 0 chr9 4778561 4778825 -137492619 + AluSx SINE Alu 1 268 -44 442 136 0 23 chr9 4778949 4779037 -137492407 + (TTCC)n Simple_repeat Simple_repeat 3 88 0 2679 45 0 0 chr9 4779332 4779643 -137491801 + AluYa5 SINE Alu 1 311 0 228 241 60 69 chr9 4779916 4780032 -137491412 + Charlie4 DNA MER1_type 1847 1961 0 1811 145 9 60 chr9 4780228 4780546 -137490898 + AluSx SINE Alu 1 302 -10 2153 109 33 0 chr9 4780585 4780887 -137490557 + AluSx SINE Alu 1 312 0 418 181 106 0 chr9 4780979 4781073 -137490371 + MER20 DNA MER1_type 24 127 -92 68 55 0 0 chr9 4782296 4782406 -137489038 + AT_rich Low_complexity Low_complexity 1 110 0 1631 198 63 25 chr9 4782831 4783226 -137488218 + L1MC4 LINE L1 7357 7766 -276 2012 73 0 33 chr9 4784329 4784604 -137486840 - AluY SINE Alu -45 266 1 2287 83 0 49 chr9 4785303 4785630 -137485814 + AluY SINE Alu 1 311 0 375 318 117 31 chr9 4785654 4785877 -137485567 + MIR SINE MIR 7 248 -14 218 342 94 8 chr9 4786111 4786228 -137485216 - MIR3 SINE MIR -51 157 31 190 310 40 60 chr9 4787299 4787399 -137484045 - MIR3 SINE MIR -22 186 89 31 0 0 0 chr9 4787843 4787874 -137483570 + AT_rich Low_complexity Low_complexity 1 31 0 509 93 58 0 chr9 4789530 4789616 -137481828 - MSTB1 LTR MaLR -341 91 1 487 261 30 37 chr9 4789667 4789801 -137481643 + MER5A DNA MER1_type 57 189 0 332 267 64 41 chr9 4790180 4790352 -137481092 + L1ME4a LINE L1 5574 5749 -372 1167 253 67 75 chr9 4790355 4790861 -137480583 - MLT1J LTR MaLR -7 504 3 331 226 209 43 chr9 4790900 4791134 -137480310 + L1ME4a LINE L1 5803 6075 -46 3686 98 7 19 chr9 4792275 4792746 -137478698 - L1PA15 LINE L1 -255 5910 5443 1826 148 3 14 chr9 4792746 4793049 -137478395 - AluJo SINE Alu 0 302 3 3686 98 7 19 chr9 4793049 4793114 -137478330 - L1PA15 LINE L1 -722 5443 5379 * 5310 172 23 14 chr9 4793112 4794250 -137477194 + L1P LINE L1 4252 5399 -765 1082 266 135 37 chr9 4794254 4794772 -137476672 - L2 LINE L2 -1652 1662 1094 1710 122 61 34 chr9 4795130 4795425 -137476019 + AluSg SINE Alu 1 303 -7 219 186 0 0 chr9 4796198 4796241 -137475203 + CT-rich Low_complexity Low_complexity 1 43 0 213 256 61 24 chr9 4796782 4796864 -137474580 + MER91C DNA MER1_type 24 108 -32 2808 159 39 4 chr9 4797809 4798300 -137473144 - L1MB3 LINE L1 -3 6180 5673 3167 88 16 7 chr9 4798307 4798730 -137472714 - L1PA11 LINE L1 -3 6171 5745 956 237 11 0 chr9 4798876 4799062 -137472382 - MER5A DNA MER1_type -1 188 1 444 172 0 94 chr9 4799148 4799340 -137472104 + (AGGTG)n Simple_repeat Simple_repeat 2 175 0 1433 224 118 7 chr9 4799670 4800086 -137471358 - MLT1C LTR MaLR 0 467 6 352 338 8 72 chr9 4800317 4800580 -137470864 - L2 LINE L2 -191 3081 2836 477 356 18 18 chr9 4800602 4800827 -137470617 - L3 LINE CR1 -287 1290 1066 2508 56 0 0 chr9 4801104 4801406 -137470038 + AluYa5 SINE Alu 1 302 -9 1731 110 16 0 chr9 4801406 4801651 -137469793 + L1MA2 LINE L1 6056 6304 0 22 35 0 0 chr9 4801651 4801680 -137469764 + AT_rich Low_complexity Low_complexity 1 29 0 1492 133 27 5 chr9 4801688 4801956 -137469488 + LTR24C LTR ERV1 316 635 0 1829 159 0 20 chr9 4802639 4802934 -137468510 - AluSx SINE Alu -23 289 1 185 0 40 0 chr9 4805199 4805224 -137466220 + (TTTG)n Simple_repeat Simple_repeat 2 27 0 451 193 83 121 chr9 4805844 4806109 -137465335 + MER112 DNA MER1_type 1 255 -1 213 220 40 0 chr9 4806637 4806687 -137464757 + CT-rich Low_complexity Low_complexity 3 54 0 225 371 86 9 chr9 4807572 4807688 -137463756 + L2 LINE L2 3187 3311 -2 196 336 8 50 chr9 4808087 4808206 -137463238 + MIR SINE MIR 32 145 -63 2138 122 0 0 chr9 4809911 4810199 -137461245 + AluSx SINE Alu 1 288 -24 448 204 106 18 chr9 4810214 4810327 -137461117 + Charlie4 DNA MER1_type 1839 1961 0 1385 170 15 26 chr9 4810663 4810928 -137460516 + L1PA13 LINE L1 5891 6152 -11 189 0 0 0 chr9 4810928 4810949 -137460495 + (TTTTTG)n Simple_repeat Simple_repeat 2 22 0 2121 129 0 0 chr9 4810970 4811265 -137460179 + AluSx SINE Alu 1 295 -17 194 269 108 9 chr9 4811503 4811619 -137459825 + MIR SINE MIR 9 138 -70 618 247 159 18 chr9 4811621 4811848 -137459596 - MIR SINE MIR -3 259 1 287 228 0 0 chr9 4812178 4812235 -137459209 + MLT1J2 LTR MaLR 394 450 0 227 215 15 31 chr9 4812389 4812454 -137458990 + MIR SINE MIR 168 231 -31 436 267 50 62 chr9 4813537 4813698 -137457746 + MIR SINE MIR 53 211 -51 2099 190 72 11 chr9 4813780 4814237 -137457207 + MER31A LTR ERV1 1 485 0 29 47 0 0 chr9 4814928 4814971 -137456473 + AT_rich Low_complexity Low_complexity 1 43 0 190 148 37 0 chr9 4815134 4815188 -137456256 + (TA)n Simple_repeat Simple_repeat 2 57 0 961 211 0 0 chr9 4815253 4815433 -137456011 + AluJb SINE Alu 131 310 -2 2536 179 79 20 chr9 4815434 4815966 -137455478 - Tigger6a DNA MER2_type -575 1022 450 1769 127 33 23 chr9 4815966 4816266 -137455178 - AluSg SINE Alu -7 303 1 2536 179 79 20 chr9 4816266 4816331 -137455113 - Tigger6a DNA MER2_type -1147 450 390 693 323 81 9 chr9 4816609 4816953 -137454491 - L1MC/D LINE L1 -1986 5822 5454 439 272 146 0 chr9 4817101 4817259 -137454185 - MER20B DNA MER1_type -602 181 1 1616 101 5 0 chr9 4817652 4817871 -137453573 + AluSg/x SINE Alu 83 302 -10 386 165 142 63 chr9 4818290 4818417 -137453027 - MER113 DNA MER1_type? -90 431 295 2293 129 122 38 chr9 4818429 4818660 -137452784 - MSTA LTR MaLR 0 428 218 2055 106 39 0 chr9 4818660 4818965 -137452479 + AluSx SINE Alu 1 312 0 2293 129 122 38 chr9 4818965 4819128 -137452316 - MSTA LTR MaLR -210 218 1 287 224 0 94 chr9 4819247 4819332 -137452112 - MER5B DNA MER1_type -99 79 3 281 221 163 0 chr9 4819744 4819830 -137451614 - MER113 DNA MER1_type? -127 394 295 373 167 15 0 chr9 4819843 4819909 -137451535 - MSTA LTR MaLR 0 428 362 180 0 0 0 chr9 4820338 4820358 -137451086 + (TAA)n Simple_repeat Simple_repeat 2 21 0 2166 132 0 16 chr9 4820358 4820669 -137450775 + AluSx SINE Alu 1 306 -6 445 260 253 4 chr9 4820934 4821215 -137450229 + L2 LINE L2 2303 2653 -661 284 279 13 0 chr9 4821216 4821295 -137450149 - MER116 DNA Mariner 0 80 1 628 310 48 85 chr9 4821300 4821913 -137449531 + L2 LINE L2 2660 3251 -21 338 304 152 23 chr9 4822013 4822184 -137449260 - MIR SINE MIR -50 212 20 243 0 0 0 chr9 4822190 4822217 -137449227 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 422 268 72 102 chr9 4822269 4822504 -137448940 - MER102b DNA MER1_type -11 330 103 763 276 30 42 chr9 4823487 4823686 -137447758 - MLT1J2 LTR MaLR 0 450 253 1383 175 0 43 chr9 4823686 4823724 -137447720 - MER58A DNA MER1_type -2196 224 186 2211 120 3 0 chr9 4823724 4824025 -137447419 + AluSq SINE Alu 1 302 -11 1383 175 0 43 chr9 4824025 4824220 -137447224 - MER58A DNA MER1_type -2234 186 1 763 276 30 42 chr9 4824220 4824285 -137447159 - MLT1J2 LTR MaLR -197 253 189 185 365 48 21 chr9 4824524 4824669 -137446775 - L2 LINE L2 -318 2954 2806 2073 132 0 22 chr9 4824790 4825108 -137446336 - AluSx SINE Alu 0 312 2 2077 157 0 0 chr9 4825311 4825623 -137445821 + AluSx SINE Alu 1 312 0 2234 103 0 3 chr9 4825976 4826277 -137445167 + AluSc SINE Alu 1 300 -9 322 295 156 64 chr9 4826398 4826693 -137444751 - L2 LINE L2 -17 3255 2934 189 171 0 0 chr9 4826744 4826779 -137444665 + (TGGA)n Simple_repeat Simple_repeat 3 37 0 2402 70 0 3 chr9 4827831 4828111 -137443333 + AluY SINE Alu 1 281 -30 286 51 0 0 chr9 4828111 4828150 -137443294 + (CAAAA)n Simple_repeat Simple_repeat 1 130 0 313 228 272 13 chr9 4828316 4828474 -137442970 + L1ME4a LINE L1 5670 5868 -253 2221 96 13 26 chr9 4828687 4829000 -137442444 + AluSq SINE Alu 1 309 -4 391 279 14 21 chr9 4829542 4829568 -137441876 - MIR SINE MIR -46 216 191 483 69 0 0 chr9 4829568 4829640 -137441804 + (TCTA)n Simple_repeat Simple_repeat 3 74 0 391 279 14 21 chr9 4829640 4829753 -137441691 - MIR SINE MIR -71 191 78 446 162 0 0 chr9 4829757 4829825 -137441619 + Tigger2 DNA MER2_type 2 69 -2649 * 2557 142 56 7 chr9 4829809 4830240 -137441204 + Tigger2 DNA MER2_type 2267 2718 0 182 271 0 0 chr9 4830260 4830308 -137441136 - MIR SINE MIR -208 54 7 2238 125 40 8 chr9 4830741 4831094 -137440350 + THE1B LTR MaLR 1 364 0 271 212 40 30 chr9 4831239 4831338 -137440106 - L1MEd LINE L1 -5029 1090 991 204 200 0 0 chr9 4831852 4831897 -137439547 + (CGG)n Simple_repeat Simple_repeat 2 46 0 1046 151 12 0 chr9 4833676 4833842 -137437602 + AluSg/x SINE Alu 140 307 -5 1986 131 17 10 chr9 4833854 4834151 -137437293 + AluJb SINE Alu 1 299 -13 537 219 62 23 chr9 4834960 4835088 -137436356 + FLAM_C SINE Alu 3 135 -8 324 293 138 22 chr9 4835496 4835721 -137435723 + MIR SINE MIR 6 256 -6 47 0 0 0 chr9 4835967 4836014 -137435430 + AT_rich Low_complexity Low_complexity 1 47 0 702 278 112 46 chr9 4836635 4836984 -137434460 - L2 LINE L2 0 3313 2942 345 361 67 13 chr9 4837217 4837516 -137433928 - L2 LINE L2 -923 2391 2077 816 181 0 0 chr9 4837724 4837857 -137433587 - FLAM_C SINE Alu 0 133 1 201 59 88 0 chr9 4837857 4837891 -137433553 + T-rich Low_complexity Low_complexity 2 38 0 1551 185 10 20 chr9 4837950 4838242 -137433202 + AluJo SINE Alu 1 289 -23 387 155 0 14 chr9 4838408 4838479 -137432965 - MLT1C LTR MaLR 0 467 398 689 169 245 0 chr9 4838500 4838684 -137432760 - MIR SINE MIR -26 236 8 202 319 121 45 chr9 4838680 4838837 -137432607 + L2 LINE L2 3096 3264 -8 * 25 31 0 0 chr9 4839996 4840028 -137431416 + AT_rich Low_complexity Low_complexity 1 32 0 205 182 0 0 chr9 4840146 4840179 -137431265 + (TATATG)n Simple_repeat Simple_repeat 4 36 0 515 97 84 0 chr9 4840233 4840387 -137431057 + (TA)n Simple_repeat Simple_repeat 1 167 0 2302 105 0 0 chr9 4840388 4840682 -137430762 - AluSx SINE Alu -18 294 1 1292 131 5 15 chr9 4841639 4841837 -137429607 - AluSg/x SINE Alu -5 305 110 2146 109 13 3 chr9 4842875 4843178 -137428266 + AluY SINE Alu 3 308 -3 2035 124 7 3 chr9 4843224 4843515 -137427929 + AluSx SINE Alu 3 294 -18 317 267 33 27 chr9 4843550 4843700 -137427744 + L1ME4a LINE L1 5719 5869 -252 708 174 16 0 chr9 4843786 4843907 -137427537 + FLAM_C SINE Alu 2 124 -19 924 125 0 22 chr9 4844044 4844180 -137427264 - AluSq/x SINE Alu -173 139 7 739 155 9 0 chr9 4844756 4844872 -137426572 - AluSg/x SINE Alu -9 301 185 2037 113 18 0 chr9 4845059 4845334 -137426110 + AluSx SINE Alu 1 280 -32 234 0 0 0 chr9 4845338 4845364 -137426080 + (TTAA)n Simple_repeat Simple_repeat 3 28 0 252 0 0 0 chr9 4845372 4845400 -137426044 + (TG)n Simple_repeat Simple_repeat 2 29 0 464 284 123 89 chr9 4845459 4845910 -137425534 - L1ME4a LINE L1 -293 5828 5372 266 257 0 0 chr9 4845952 4846022 -137425422 - MIR SINE MIR -127 135 66 2295 105 0 10 chr9 4847294 4847598 -137423846 + AluSg SINE Alu 1 301 -9 447 301 15 0 chr9 4847605 4847741 -137423703 + MIR SINE MIR 15 152 -110 287 316 41 0 chr9 4847776 4847874 -137423570 + MIR SINE MIR 140 241 -21 683 177 53 0 chr9 4847971 4848084 -137423360 + LTR8 LTR ERV1 1 119 -572 1316 117 0 0 chr9 4848084 4848263 -137423181 - AluSg/x SINE Alu -2 308 130 2238 117 7 0 chr9 4848263 4848571 -137422873 - AluSx SINE Alu 0 312 3 1136 145 40 122 chr9 4848573 4848869 -137422575 + LTR8A LTR ERV1 119 390 -337 2140 117 0 0 chr9 4848888 4849171 -137422273 - AluSq SINE Alu -30 283 1 1242 198 84 62 chr9 4849171 4849540 -137421904 + LTR8A LTR ERV1 351 727 0 2168 99 3 20 chr9 4849576 4849878 -137421566 - AluSq SINE Alu -16 297 1 21 89 0 0 chr9 4849902 4849958 -137421486 + AT_rich Low_complexity Low_complexity 1 56 0 2858 123 186 6 chr9 4850021 4850548 -137420896 + LTR29 LTR ERV1 1 622 0 1616 165 0 29 chr9 4850581 4850854 -137420590 - AluJo SINE Alu -47 265 1 957 64 0 0 chr9 4850938 4851048 -137420396 - AluSq SINE Alu -95 218 109 735 316 0 0 chr9 4851185 4851394 -137420050 - MIR SINE MIR -26 236 28 1530 173 0 26 chr9 4851545 4851811 -137419633 - AluJo SINE Alu -16 296 38 808 243 18 101 chr9 4852620 4852787 -137418657 + L2 LINE L2 1858 1985 -1329 1592 153 0 130 chr9 4852787 4853134 -137418310 - AluJb SINE Alu -10 302 1 808 243 18 101 chr9 4853134 4853303 -137418141 + L2 LINE L2 1985 2166 -1148 1451 269 112 11 chr9 4853303 4853825 -137417619 + L2 LINE L2 2449 2917 -396 2046 106 0 35 chr9 4853825 4854108 -137417336 - AluSg SINE Alu -37 273 1 1451 269 112 11 chr9 4854108 4854143 -137417301 + L2 LINE L2 2917 2947 -366 183 80 0 0 chr9 4854143 4854168 -137417276 + (CACCAT)n Simple_repeat Simple_repeat 3 27 0 1451 269 112 11 chr9 4854168 4854383 -137417061 + L2 LINE L2 2947 3313 0 2341 100 0 13 chr9 4854750 4855050 -137416394 - AluSc SINE Alu -13 296 1 1811 176 7 0 chr9 4855243 4855533 -137415911 - AluJo SINE Alu -18 294 3 3144 285 65 0 chr9 4855535 4856181 -137415263 + Tigger1 DNA MER2_type 44 731 -1687 2242 143 45 31 chr9 4856175 4856482 -137414962 + Tigger1 DNA MER2_type 1993 2309 -109 * 1967 145 21 3 chr9 4856482 4856772 -137414672 - AluSx SINE Alu -17 295 1 2242 143 45 31 chr9 4856772 4856883 -137414561 + Tigger1 DNA MER2_type 2309 2417 -1 238 321 37 83 chr9 4857050 4857159 -137414285 - MIR SINE MIR -89 119 16 7864 169 13 26 chr9 4857973 4859395 -137412049 - L1P LINE L1 -4732 1414 11 565 309 40 15 chr9 4859511 4859712 -137411732 - MLT1I LTR MaLR -203 206 1 673 243 0 0 chr9 4860197 4860333 -137411111 + FLAM_C SINE Alu 2 137 -6 11886 84 10 9 chr9 4860588 4863681 -137407763 + L1PA6 LINE L1 1635 5401 -745 3486 43 2 0 chr9 4863681 4864096 -137407348 + L1PA6 LINE L1 5730 6146 -8 10648 168 42 11 chr9 4864336 4864826 -137406618 + L1MA6 LINE L1 3197 3670 -2476 1815 162 7 13 chr9 4864826 4865135 -137406309 + AluJb SINE Alu 1 307 -5 10648 168 42 11 chr9 4865135 4866745 -137404699 + L1MA6 LINE L1 3670 5363 -783 1532 195 6 38 chr9 4866748 4867061 -137404383 + AluJb SINE Alu 1 303 -9 645 183 37 43 chr9 4867063 4867227 -137404217 + L1MA6 LINE L1 5906 6068 -232 746 162 58 104 chr9 4867227 4867486 -137403958 + L1MB8 LINE L1 5931 6177 -1 314 240 82 16 chr9 4867667 4867850 -137403594 - L1M4 LINE L1 -1786 4360 4166 * 40396 74 9 2 chr9 4867829 4873937 -137397507 - L1PA6 LINE L1 -2 6152 1 2389 235 37 7 chr9 4873948 4874620 -137396824 - L1M4 LINE L1 -2294 3852 3161 21 57 0 0 chr9 4874820 4874855 -137396589 + AT_rich Low_complexity Low_complexity 1 35 0 1138 86 0 7 chr9 4874855 4875007 -137396437 - L1MA1 LINE L1 -4 6298 6148 2069 141 0 3 chr9 4875017 4875330 -137396114 - AluSx SINE Alu 0 312 1 270 270 51 7 chr9 4875759 4875896 -137395548 + MER113 DNA MER1_type? 1 143 -378 2222 125 0 6 chr9 4875901 4876212 -137395232 + AluSx SINE Alu 1 309 -3 31 26 0 0 chr9 4876212 4876250 -137395194 + AT_rich Low_complexity Low_complexity 1 38 0 671 231 21 0 chr9 4876604 4876747 -137394697 + MER58B DNA MER1_type 181 326 -15 1520 199 11 11 chr9 4876866 4877147 -137394297 + AluJo SINE Alu 1 281 -31 395 250 75 19 chr9 4878765 4878925 -137392519 - L1MC5 LINE L1 -184 7777 7609 202 315 130 0 chr9 4879079 4879187 -137392257 + MIR SINE MIR 17 138 -70 692 281 59 64 chr9 4879578 4880034 -137391410 - L1ME4a LINE L1 -178 5943 5490 344 114 0 0 chr9 4880364 4880408 -137391036 + MER72 LTR ERV1 585 628 -94 864 172 0 0 chr9 4880760 4880882 -137390562 + FLAM_C SINE Alu 1 122 -11 746 276 16 79 chr9 4880936 4881240 -137390204 - MER102a DNA MER1_type -18 312 28 20138 39 10 2 chr9 4881790 4884510 -137386934 + L1P2 LINE L1 2915 5658 -497 260 290 220 5 chr9 4885846 4886032 -137385412 + L2 LINE L2 2921 3146 -167 2118 218 55 0 chr9 4886390 4886859 -137384585 - Charlie4a DNA MER1_type 0 508 14 217 233 178 0 chr9 4886911 4886984 -137384460 + L2 LINE L2 3227 3312 -1 498 116 0 0 chr9 4887963 4888032 -137383412 + MSTA LTR MaLR 360 428 0 281 221 163 0 chr9 4888045 4888131 -137383313 + MER113 DNA MER1_type? 295 394 -127 230 271 0 94 chr9 4888542 4888627 -137382817 + MER5B DNA MER1_type 3 79 -99 1338 247 36 11 chr9 4888785 4889141 -137382303 + L1ME1 LINE L1 5778 6142 -24 180 111 0 0 chr9 4889597 4889624 -137381820 + (TTGGGG)n Simple_repeat Simple_repeat 6 32 0 350 384 21 11 chr9 4889654 4889844 -137381600 - L2 LINE L2 -557 2757 2566 216 67 0 0 chr9 4889856 4889886 -137381558 + (CATTA)n Simple_repeat Simple_repeat 3 32 0 214 29 57 0 chr9 4889970 4890005 -137381439 + (TC)n Simple_repeat Simple_repeat 1 37 0 997 280 22 19 chr9 4890050 4890318 -137381126 - MLT1H1 LTR MaLR -284 271 3 224 298 162 10 chr9 4890398 4890596 -137380848 - L2 LINE L2 -993 2321 2094 247 258 16 0 chr9 4891963 4892025 -137379419 + MIR SINE MIR 77 139 -123 638 269 60 96 chr9 4892325 4892772 -137378672 - MLT1K LTR MaLR -2 586 156 2375 159 3 3 chr9 4893086 4893451 -137377993 - MLT1A1 LTR MaLR 0 365 1 306 0 0 0 chr9 4893500 4893534 -137377910 + (CA)n Simple_repeat Simple_repeat 2 35 0 2756 208 52 67 chr9 4893543 4894164 -137377280 + L1MC/D LINE L1 4019 4647 -1499 1946 146 20 3 chr9 4894164 4894466 -137376978 + AluJb SINE Alu 1 307 -5 2756 208 52 67 chr9 4894466 4894597 -137376847 + L1MC/D LINE L1 4647 4796 -1350 310 28 0 0 chr9 4894597 4894633 -137376811 - MADE1 DNA Mariner -44 36 1 2756 208 52 67 chr9 4894633 4894684 -137376760 + L1MC/D LINE L1 4796 4846 -1300 906 198 0 18 chr9 4894695 4894862 -137376582 - FRAM SINE Alu -12 164 1 2064 175 53 20 chr9 4894866 4895532 -137375912 + L1MC/D LINE L1 4849 5542 -744 2038 158 0 0 chr9 4895921 4896231 -137375213 + AluJb SINE Alu 1 310 -2 403 259 229 15 chr9 4896316 4896521 -137374923 - MIR SINE MIR -2 260 12 541 259 56 0 chr9 4896974 4897117 -137374327 - MER117 DNA MER1_type -35 162 12 2344 104 0 7 chr9 4898858 4899165 -137372279 - AluSx SINE Alu -7 305 1 1943 119 0 63 chr9 4899457 4899640 -137371804 - AluSx SINE Alu 0 316 160 1969 113 7 7 chr9 4899640 4899922 -137371522 - AluSx SINE Alu -10 302 21 1943 119 0 63 chr9 4899922 4900073 -137371371 - AluSx SINE Alu -156 160 1 2132 112 0 13 chr9 4900766 4901069 -137370375 + AluY SINE Alu 1 299 -12 561 304 52 87 chr9 4902665 4903092 -137368352 - L2 LINE L2 -27 3245 2834 1013 266 135 17 chr9 4903092 4903558 -137367886 - LTR33 LTR ERVL 0 521 1 1429 156 0 0 chr9 4903658 4903869 -137367575 - AluSg/x SINE Alu -20 290 80 1580 130 0 0 chr9 4903971 4904187 -137367257 - AluSx SINE Alu -96 216 1 264 257 14 14 chr9 4904368 4904442 -137367002 + L2 LINE L2 3195 3268 -4 224 282 15 84 chr9 4904678 4904809 -137366635 - L2 LINE L2 0 3272 3151 933 288 16 0 chr9 4904865 4905108 -137366336 - MIR SINE MIR -15 247 1 230 335 57 67 chr9 4905179 4905388 -137366056 - L2 LINE L2 -214 3058 2852 1230 239 38 35 chr9 4906476 4906844 -137364600 - MLT1J LTR MaLR 0 511 143 1581 164 36 22 chr9 4906903 4907178 -137364266 + AluJb SINE Alu 1 279 -33 288 211 14 0 chr9 4907282 4907353 -137364091 + L1MB3 LINE L1 4744 4815 -1331 565 185 0 11 chr9 4907353 4907445 -137363999 + AluJb SINE Alu 41 131 -181 709 252 99 10 chr9 4907445 4907741 -137363703 + L1MB3 LINE L1 4761 5093 -1053 1182 179 0 23 chr9 4907787 4908005 -137363439 - AluJb SINE Alu -13 299 87 976 177 0 11 chr9 4908076 4908257 -137363187 - AluSg/x SINE Alu -5 305 127 292 261 46 50 chr9 4908314 4908467 -137362977 + L1MB3 LINE L1 5257 5412 -753 708 212 54 163 chr9 4908532 4909004 -137362440 + L1MC4a LINE L1 5692 6101 -1707 848 157 0 30 chr9 4909004 4909138 -137362306 - FLAM_C SINE Alu -3 130 1 708 212 54 163 chr9 4909138 4909198 -137362246 + L1MC4a LINE L1 6101 6166 -1642 2318 108 0 0 chr9 4909444 4909751 -137361693 - AluSq SINE Alu -6 307 1 3455 128 67 92 chr9 4909944 4910512 -137360932 + L1MB3 LINE L1 5450 5996 -187 1943 148 3 3 chr9 4910512 4910803 -137360641 - AluJb SINE Alu -21 291 1 3455 128 67 92 chr9 4910803 4910985 -137360459 + L1MB3 LINE L1 5996 6181 -2 1572 227 108 83 chr9 4910985 4911421 -137360023 + L1MC5 LINE L1 6560 6984 -977 1936 112 21 17 chr9 4911421 4911708 -137359736 + AluSx SINE Alu 7 294 -18 1572 227 108 83 chr9 4911708 4912125 -137359319 + L1MC5 LINE L1 6984 7443 -518 27 0 0 0 chr9 4912137 4912164 -137359280 + AT_rich Low_complexity Low_complexity 1 27 0 383 147 0 29 chr9 4912178 4912246 -137359198 - AluJb SINE Alu -167 135 70 710 181 95 0 chr9 4912793 4912909 -137358535 + FLAM_C SINE Alu 3 129 -14 241 261 15 0 chr9 4912962 4913027 -137358417 + (TTCA)n Simple_repeat Simple_repeat 4 69 0 183 292 0 97 chr9 4913221 4913293 -137358151 - L2 LINE L2 -332 2940 2876 205 348 22 0 chr9 4913323 4913415 -137358029 - L2 LINE L2 -484 2830 2737 2354 76 0 13 chr9 4914012 4914315 -137357129 - AluY SINE Alu -8 303 5 2756 186 117 41 chr9 4915201 4915809 -137355635 - MLT1E1 LTR MaLR 0 654 1 764 138 9 0 chr9 4916476 4916585 -137354859 - FLAM_C SINE Alu -11 132 23 262 290 54 21 chr9 4916590 4916776 -137354668 - L1MEd LINE L1 -3107 3022 2831 338 288 72 16 chr9 4916789 4917039 -137354405 - L1MEd LINE L1 -5043 1076 813 257 341 58 45 chr9 4917236 4917547 -137353897 - L1MEd LINE L1 -5555 564 250 1663 178 31 0 chr9 4917576 4917869 -137353575 + MSTB2 LTR MaLR 7 308 -149 30 27 0 0 chr9 4917874 4917911 -137353533 + AT_rich Low_complexity Low_complexity 1 37 0 1129 149 0 0 chr9 4917930 4918098 -137353346 + MSTB2 LTR MaLR 290 457 0 778 210 32 68 chr9 4918689 4918908 -137352536 + MIR SINE MIR 52 262 0 237 217 142 75 chr9 4919315 4919435 -137352009 - L2 LINE L2 -8 3305 3178 2349 131 16 31 chr9 4919686 4920067 -137351377 + THE1C LTR MaLR 1 375 0 247 241 17 0 chr9 4920199 4920257 -137351187 - MER5A DNA MER1_type -3 186 128 2520 78 0 0 chr9 4920259 4920567 -137350877 + AluY SINE Alu 1 308 -3 21 0 0 0 chr9 4921359 4921380 -137350064 + AT_rich Low_complexity Low_complexity 1 21 0 3755 170 20 27 chr9 4921395 4922162 -137349282 + L1MB7 LINE L1 5202 5969 -215 731 300 18 0 chr9 4922818 4923038 -137348406 + MIR SINE MIR 36 259 -3 1029 193 0 0 chr9 4924079 4924245 -137347199 + FRAM SINE Alu 1 166 0 2244 104 3 25 chr9 4924347 4924664 -137346780 - AluSx SINE Alu -2 310 1 515 179 36 0 chr9 4925155 4925267 -137346177 - L1 LINE L1 -2824 3322 3207 29 47 0 0 chr9 4925555 4925598 -137345846 + AT_rich Low_complexity Low_complexity 1 43 0 207 179 0 0 chr9 4926274 4926313 -137345131 + (TGAA)n Simple_repeat Simple_repeat 1 39 0 201 281 53 61 chr9 4928024 4928138 -137343306 + MIR SINE MIR 99 211 -51 305 326 28 14 chr9 4928167 4928220 -137343224 - MIR3 SINE MIR -5 203 152 1901 164 0 22 chr9 4928220 4928538 -137342906 + AluJo SINE Alu 1 311 -1 305 326 28 14 chr9 4928538 4928628 -137342816 - MIR3 SINE MIR -56 152 58 699 295 52 33 chr9 4928728 4928999 -137342445 - Charlie8 DNA MER1_type -2141 276 1 1730 220 37 8 chr9 4929008 4929363 -137342081 + MLT1A1 LTR MaLR 1 365 0 2115 121 13 16 chr9 4929380 4929686 -137341758 - AluSx SINE Alu -7 305 1 190 379 38 15 chr9 4929686 4929818 -137341626 + L2 LINE L2 2776 2910 -404 1785 166 3 24 chr9 4929926 4930222 -137341222 - AluJo SINE Alu -19 293 4 1596 165 113 130 chr9 4930754 4931401 -137340043 + LTR1B LTR ERV1 110 745 -81 187 184 53 0 chr9 4931562 4931600 -137339844 - MIR SINE MIR -63 145 106 3675 112 112 0 chr9 4931922 4932493 -137338951 - LTR24C LTR ERV1 0 635 1 200 275 0 0 chr9 4932884 4932924 -137338520 + polypurine Low_complexity Low_complexity 4 43 0 183 80 0 0 chr9 4932930 4932955 -137338489 + (GGAA)n Simple_repeat Simple_repeat 4 28 0 21 0 0 0 chr9 4933494 4933515 -137337929 + AT_rich Low_complexity Low_complexity 1 21 0 1813 156 14 3 chr9 4934634 4934929 -137336515 + AluJb SINE Alu 1 298 -14 44768 41 0 1 chr9 4936154 4942314 -137329130 + L1PA3 LINE L1 2 6155 0 25 0 0 0 chr9 4942328 4942353 -137329091 + AT_rich Low_complexity Low_complexity 1 25 0 738 263 40 11 chr9 4942381 4942556 -137328888 - AluJo SINE Alu -47 265 86 1287 192 5 0 chr9 4942556 4942775 -137328669 - AluJo SINE Alu -92 220 1 276 320 50 50 chr9 4942868 4943068 -137328376 + L2 LINE L2 2885 3084 -188 306 106 0 0 chr9 4943270 4943317 -137328127 + (TTCA)n Simple_repeat Simple_repeat 3 49 0 1969 152 7 7 chr9 4943451 4943761 -137327683 + AluSx SINE Alu 1 310 -2 1937 147 3 0 chr9 4944096 4944388 -137327056 - AluSx SINE Alu -19 293 1 482 237 21 0 chr9 4945140 4945237 -137326207 + MER81 DNA DNA 2 100 -14 22 0 0 0 chr9 4945770 4945792 -137325652 + AT_rich Low_complexity Low_complexity 1 22 0 180 255 21 0 chr9 4946006 4946053 -137325391 + L2 LINE L2 3225 3272 0 224 179 30 60 chr9 4946435 4946502 -137324942 - MIR SINE MIR -94 168 104 1217 124 36 26 chr9 4946502 4946695 -137324749 + AluJo SINE Alu 1 195 -117 222 361 0 0 chr9 4946995 4947067 -137324377 - L2 LINE L2 -445 2869 2798 750 120 0 0 chr9 4947548 4947648 -137323796 - AluSg/x SINE Alu -26 284 185 570 318 0 6 chr9 4948036 4948215 -137323229 + (CA)n Simple_repeat Simple_repeat 2 179 0 458 316 0 6 chr9 4948248 4948608 -137322836 + (CA)n Simple_repeat Simple_repeat 1 357 0 417 363 0 6 chr9 4948690 4948869 -137322575 + (CA)n Simple_repeat Simple_repeat 2 179 0 8562 48 1 2 chr9 4949253 4950949 -137320495 + L1PA3 LINE L1 4315 6007 -148 2087 115 0 3 chr9 4951246 4951555 -137319889 + AluSq SINE Alu 1 308 0 404 250 24 40 chr9 4951671 4951795 -137319649 + L2 LINE L2 3151 3272 0 301 291 13 0 chr9 4951825 4951904 -137319540 - MIR3 SINE MIR -20 188 109 229 288 41 27 chr9 4951974 4952047 -137319397 - L2 LINE L2 -1 3312 3239 806 303 73 23 chr9 4952241 4952866 -137318578 - L2 LINE L2 -60 3253 2590 705 250 66 0 chr9 4953294 4953506 -137317938 - MER20B DNA MER1_type 0 783 558 1084 214 140 84 chr9 4953522 4953915 -137317529 - MER20B DNA MER1_type -366 417 3 216 336 136 18 chr9 4953969 4954079 -137317365 + L2 LINE L2 3145 3267 -5 21 0 0 0 chr9 4955850 4955871 -137315573 + AT_rich Low_complexity Low_complexity 1 21 0 2336 94 0 3 chr9 4957148 4957447 -137313997 - AluSx SINE Alu -14 298 1 1292 125 100 0 chr9 4957526 4957726 -137313718 + AluSg/x SINE Alu 84 303 -7 608 332 16 24 chr9 4957727 4957980 -137313464 - MIR SINE MIR -5 257 7 23 0 0 0 chr9 4958441 4958464 -137312980 + AT_rich Low_complexity Low_complexity 1 23 0 820 231 95 18 chr9 4958777 4958998 -137312446 + MIR SINE MIR 9 246 -16 180 349 35 35 chr9 4959349 4959435 -137312009 + MIR SINE MIR 45 130 -78 1772 240 41 7 chr9 4959465 4959878 -137311566 - L1ME1 LINE L1 -25 6141 5715 286 155 42 70 chr9 4959880 4959951 -137311493 + MIR SINE MIR 120 188 -74 402 115 0 0 chr9 4959962 4960023 -137311421 + (TA)n Simple_repeat Simple_repeat 2 62 0 606 258 145 14 chr9 4960241 4960462 -137310982 + MIR SINE MIR 13 262 0 24 0 0 0 chr9 4961021 4961045 -137310399 + AT_rich Low_complexity Low_complexity 1 24 0 1729 127 0 4 chr9 4961059 4961318 -137310126 + AluSx SINE Alu 34 291 -21 30 27 0 0 chr9 4961323 4961360 -137310084 + AT_rich Low_complexity Low_complexity 1 37 0 4123 100 32 12 chr9 4961364 4961965 -137309479 - L1MA3 LINE L1 -1 6304 5692 496 156 13 0 chr9 4962610 4962687 -137308757 - AluJ/FLAM SINE Alu -228 84 7 621 235 136 60 chr9 4962696 4963049 -137308395 - L1ME4a LINE L1 0 6121 5742 1282 223 143 61 chr9 4963054 4963777 -137307667 - LTR50 LTR ERVL 0 795 14 257 150 0 0 chr9 4963849 4963889 -137307555 - L1ME4a LINE L1 -459 5662 5623 2397 85 0 0 chr9 4965024 4965319 -137306125 - AluSx SINE Alu -9 303 9 425 222 163 0 chr9 4965355 4965490 -137305954 + L1ME4a LINE L1 5964 6120 -1 1656 196 3 7 chr9 4965918 4966219 -137305225 + AluJb SINE Alu 1 300 -12 22 0 0 0 chr9 4966219 4966241 -137305203 + AT_rich Low_complexity Low_complexity 1 22 0 884 231 100 9 chr9 4966519 4966748 -137304696 - MIR SINE MIR -12 250 1 1581 209 3 0 chr9 4966847 4967134 -137304310 - AluJo SINE Alu -20 292 5 2239 117 3 0 chr9 4967349 4967647 -137303797 + AluSg SINE Alu 1 299 -11 838 182 69 19 chr9 4967953 4968112 -137303332 - AluJo SINE Alu -24 288 122 1460 194 3 26 chr9 4968251 4968555 -137302889 - AluJo SINE Alu -15 297 1 2103 99 18 7 chr9 4968562 4968844 -137302600 - AluSx SINE Alu -27 285 1 762 179 0 30 chr9 4969126 4969260 -137302184 + FLAM_C SINE Alu 2 131 -2 22 0 0 0 chr9 4970469 4970491 -137300953 + AT_rich Low_complexity Low_complexity 1 22 0 339 293 75 45 chr9 4970905 4971038 -137300406 - L2 LINE L2 0 3272 3136 367 231 95 27 chr9 4971039 4971186 -137300258 + L1ME4a LINE L1 5713 5869 -252 514 269 99 13 chr9 4971258 4971444 -137300000 + L1ME4a LINE L1 5443 5657 -505 679 213 28 0 chr9 4971447 4971588 -137299856 + Charlie1 DNA MER1_type 5 149 -2612 * 1365 141 71 24 chr9 4971583 4971880 -137299564 + Charlie1 DNA MER1_type 2420 2730 -31 1137 154 135 5 chr9 4971986 4972194 -137299250 + MER46A DNA MER2_type 2 236 0 292 258 54 21 chr9 4972617 4972710 -137298734 + L1ME4a LINE L1 5956 6051 -70 33 25 0 0 chr9 4972733 4972773 -137298671 + AT_rich Low_complexity Low_complexity 1 40 0 1899 159 28 0 chr9 4972922 4973211 -137298233 - AluJo SINE Alu -15 297 1 622 244 73 6 chr9 4973429 4973593 -137297851 - MIR SINE MIR -3 259 85 410 206 20 0 chr9 4973879 4973981 -137297463 + CT-rich Low_complexity Low_complexity 1 104 0 2118 144 0 3 chr9 4974003 4974315 -137297129 - AluJo SINE Alu -1 311 1 1648 179 16 52 chr9 4974766 4975055 -137296389 - MER4D LTR ERV1 0 903 628 1890 174 26 0 chr9 4975055 4975359 -137296085 + AluJo SINE Alu 1 312 0 1648 179 16 52 chr9 4975359 4975432 -137296012 - MER4D LTR ERV1 -275 628 554 1781 147 35 7 chr9 4975452 4975738 -137295706 - MER49 LTR ERV1 -629 294 1 421 324 7 7 chr9 4975824 4975966 -137295478 + MIR SINE MIR 61 202 -60 1942 181 86 49 chr9 4975966 4976452 -137294992 - LTR54 LTR ERV1 0 510 7 263 333 79 8 chr9 4976726 4976852 -137294592 + MIR SINE MIR 48 182 -80 1305 189 58 0 chr9 4977353 4977635 -137293809 - AluJo SINE Alu 0 306 10 1179 233 78 33 chr9 4977636 4978076 -137293368 + LTR56 LTR ERV1 8 610 0 227 77 0 26 chr9 4978094 4978133 -137293311 + (GAAAA)n Simple_repeat Simple_repeat 4 41 0 2298 69 24 3 chr9 4978155 4978445 -137292999 + AluSq SINE Alu 1 296 -17 1774 104 150 0 chr9 4978826 4979086 -137292358 - AluSx SINE Alu -2 300 2 182 196 62 93 chr9 4979112 4979209 -137292235 - MIR SINE MIR -70 192 99 1520 95 60 0 chr9 4979655 4979887 -137291557 - L1MA8 LINE L1 -4 6287 6042 1100 124 12 6 chr9 4979934 4980103 -137291341 - AluSg/x SINE Alu -16 294 125 192 324 0 15 chr9 4980205 4980273 -137291171 + L2 LINE L2 2673 2739 -575 2343 102 0 6 chr9 4980330 4980644 -137290800 - AluSx SINE Alu 0 312 1 343 351 38 15 chr9 4980974 4981105 -137290339 + MER5A DNA MER1_type 8 141 -48 1591 176 0 25 chr9 4981114 4981393 -137290051 + AluJb SINE Alu 1 272 -40 2081 108 0 0 chr9 4981547 4981826 -137289618 + AluY SINE Alu 1 279 -32 317 130 0 87 chr9 4983170 4983239 -137288205 + L1MC4 LINE L1 6471 6533 -1509 1230 172 102 19 chr9 4983239 4983495 -137287949 + AluJo SINE Alu 17 293 -19 495 261 41 60 chr9 4983496 4983714 -137287730 + L1MC4 LINE L1 6534 6747 -1295 24 0 0 0 chr9 4983726 4983750 -137287694 + AT_rich Low_complexity Low_complexity 1 24 0 1761 114 0 0 chr9 4983762 4983989 -137287455 + AluSg SINE Alu 1 227 -83 509 311 0 7 chr9 4984145 4984293 -137287151 + (CA)n Simple_repeat Simple_repeat 1 147 0 455 295 1 0 chr9 4984312 4985228 -137286216 + (CA)n Simple_repeat Simple_repeat 1 917 0 372 294 0 0 chr9 4985260 4985678 -137285766 + (CA)n Simple_repeat Simple_repeat 1 418 0 2269 110 7 0 chr9 4986375 4986683 -137284761 + AluSx SINE Alu 1 310 -2 1757 173 7 19 chr9 4986831 4987138 -137284306 - AluJb SINE Alu -9 303 1 849 232 170 26 chr9 4987237 4987639 -137283805 + MLT1K LTR MaLR 20 551 -37 438 296 46 15 chr9 4987793 4987989 -137283455 - MIR SINE MIR 0 262 61 1615 177 23 23 chr9 4988090 4988389 -137283055 + AluJo SINE Alu 1 299 -13 502 223 234 5 chr9 4988451 4988648 -137282796 - MIR SINE MIR 0 262 21 1840 173 127 0 chr9 4989002 4989325 -137282119 + MER47A DNA MER2_type 3 366 0 339 248 19 38 chr9 4989669 4989774 -137281670 + MLT1K LTR MaLR 459 561 -27 201 179 26 0 chr9 4990758 4990797 -137280647 + GA-rich Low_complexity Low_complexity 2 41 0 756 239 68 27 chr9 4990916 4991179 -137280265 + MLT2D LTR ERVL 1 274 -140 1994 112 20 7 chr9 4991228 4991523 -137279921 + AluSx SINE Alu 1 299 -13 2003 131 3 20 chr9 4991846 4992151 -137279293 + AluJo SINE Alu 1 300 -12 2078 128 21 0 chr9 4992571 4992861 -137278583 + AluSq SINE Alu 2 297 -16 1674 107 149 0 chr9 4993239 4993501 -137277943 - AluSx SINE Alu 0 302 2 1459 95 60 0 chr9 4994070 4994302 -137277142 - L1MA8 LINE L1 -4 6287 6042 1130 120 13 0 chr9 4994349 4994507 -137276937 - AluSg/x SINE Alu -16 294 135 2327 103 0 6 chr9 4994745 4995057 -137276387 - AluSx SINE Alu -2 310 1 325 344 38 15 chr9 4995387 4995518 -137275926 + MER5A DNA MER1_type 8 141 -48 1562 179 0 25 chr9 4995527 4995806 -137275638 + AluJb SINE Alu 1 272 -40 2081 108 0 0 chr9 4995960 4996239 -137275205 + AluY SINE Alu 1 279 -32 317 130 0 87 chr9 4997583 4997652 -137273792 + L1MC4 LINE L1 6471 6533 -1509 1213 176 102 19 chr9 4997652 4997908 -137273536 + AluJo SINE Alu 17 293 -19 495 261 41 60 chr9 4997909 4998127 -137273317 + L1MC4 LINE L1 6534 6747 -1295 24 0 0 0 chr9 4998139 4998163 -137273281 + AT_rich Low_complexity Low_complexity 1 24 0 2215 118 0 13 chr9 4998175 4998489 -137272955 + AluSg SINE Alu 1 310 0 306 347 0 0 chr9 4998585 4998683 -137272761 + L1MC/D LINE L1 5465 5562 -2246 369 109 0 0 chr9 4998687 4998742 -137272702 + MLT2B1 LTR ERVL 1 55 -465 1335 143 0 46 chr9 4998748 4998965 -137272479 + AluJb SINE Alu 1 207 -105 1913 162 0 20 chr9 4999320 4999623 -137271821 + AluSq SINE Alu 1 297 -16 2520 184 89 7 chr9 4999735 5000310 -137271134 - L1MB7 LINE L1 -76 6108 5487 1830 131 3 91 chr9 5000310 5000639 -137270805 - AluSx SINE Alu -12 300 1 5732 178 47 6 chr9 5000656 5001686 -137269758 + L1MA2 LINE L1 5 1076 -6489 315 203 0 0 chr9 5001702 5001771 -137269673 + T-rich Low_complexity Low_complexity 1 69 0 5937 174 30 85 chr9 5002538 5003390 -137268054 + L1MA2 LINE L1 1081 1978 -5745 2342 101 14 0 chr9 5003390 5003686 -137267758 - AluSx SINE Alu -12 300 1 5937 174 30 85 chr9 5003686 5004064 -137267380 + L1MA2 LINE L1 1978 2375 -5348 2282 114 0 3 chr9 5004064 5004371 -137267073 - AluSx SINE Alu -6 306 1 5937 174 30 85 chr9 5004371 5005666 -137265778 + L1MA2 LINE L1 2375 3739 -3984 2794 73 0 8 chr9 5005666 5006035 -137265409 + L1PA8 LINE L1 5807 6172 0 5937 174 30 85 chr9 5006035 5006417 -137265027 + L1MA2 LINE L1 3739 4140 -3583 2627 90 0 37 chr9 5006417 5006722 -137264722 + THE1B LTR MaLR 1 291 -73 2235 119 0 0 chr9 5006722 5007025 -137264419 - AluSg SINE Alu -7 303 1 2627 90 0 37 chr9 5007025 5007097 -137264347 + THE1B LTR MaLR 291 364 0 5937 174 30 85 chr9 5007097 5008699 -137262745 + L1MA2 LINE L1 4140 5828 -1895 1712 158 92 0 chr9 5008699 5008971 -137262473 - AluSx SINE Alu -15 297 1 5937 174 30 85 chr9 5008971 5009127 -137262317 + L1MA2 LINE L1 5828 5991 -1732 1653 151 45 34 chr9 5009127 5009418 -137262026 + AluJb SINE Alu 11 304 -8 5937 174 30 85 chr9 5009418 5010026 -137261418 + L1MA2 LINE L1 5991 6631 -1092 1311 140 0 0 chr9 5010026 5010212 -137261232 + AluSg/x SINE Alu 125 310 -2 5937 174 30 85 chr9 5010212 5011575 -137259869 + L1MA2 LINE L1 6631 7723 0 2209 150 0 0 chr9 5011580 5011941 -137259503 + L1 LINE L1 4644 5004 -1142 1303 198 68 0 chr9 5011941 5012178 -137259266 + AluJb SINE Alu 1 253 -59 1992 158 0 0 chr9 5013801 5014099 -137257345 + AluJo SINE Alu 1 298 -14 699 290 45 0 chr9 5014385 5014606 -137256838 + MIR SINE MIR 32 262 0 269 323 91 5 chr9 5014610 5014796 -137256648 - L1M4 LINE L1 -1010 5136 4935 2120 113 0 10 chr9 5014918 5015210 -137256234 + AluSx SINE Alu 18 306 -6 27 87 0 0 chr9 5015538 5015607 -137255837 + AT_rich Low_complexity Low_complexity 1 69 0 33150 100 12 59 chr9 5015617 5022071 -137249373 + L1PA7 LINE L1 12 6153 -1 295 264 0 11 chr9 5022773 5022860 -137248584 - L1MDb LINE L1 -5432 977 892 22 0 0 0 chr9 5022903 5022925 -137248519 + AT_rich Low_complexity Low_complexity 1 22 0 747 238 165 79 chr9 5023157 5023689 -137247755 + MLT1L LTR MaLR 4 580 -8 279 221 44 15 chr9 5023795 5023863 -137247581 - L2 LINE L2 -13 3300 3231 587 317 96 30 chr9 5023917 5024585 -137246859 - L2 LINE L2 -226 3046 2334 308 265 65 37 chr9 5024593 5024808 -137246636 - L1MC4 LINE L1 -1 8041 7821 1682 192 13 37 chr9 5024841 5025060 -137246384 - L1ME2 LINE L1 -10 6154 5936 1156 256 62 41 chr9 5025060 5025908 -137245536 - L1MB2 LINE L1 -224 6341 1476 257 0 30 0 chr9 5025910 5025943 -137245501 + (TTTTA)n Simple_repeat Simple_repeat 2 35 0 842 206 0 0 chr9 5025948 5026094 -137245350 - FRAM SINE Alu -30 146 1 748 211 34 96 chr9 5026099 5026507 -137244937 - L1ME LINE L1 -5136 934 552 251 111 0 22 chr9 5026919 5026964 -137244480 + (GGGA)n Simple_repeat Simple_repeat 2 45 0 490 243 18 0 chr9 5026972 5027083 -137244361 + MER103 DNA DNA 8 120 -46 1377 170 88 28 chr9 5027112 5027395 -137244049 - AluJb SINE Alu -12 300 1 265 204 174 51 chr9 5027575 5027673 -137243771 + MIR SINE MIR 21 130 -78 2148 121 0 7 chr9 5028640 5028937 -137242507 - AluSx SINE Alu -17 295 1 272 279 52 10 chr9 5029409 5029575 -137241869 - LTR16C LTR ERVL -269 222 2 414 280 95 11 chr9 5030297 5030515 -137240929 + MLT1H LTR MaLR 62 334 -215 5116 63 38 0 chr9 5030592 5031227 -137240217 - PABL_A LTR ERV1 -1 659 1 220 221 103 29 chr9 5031462 5031530 -137239914 + MER5A DNA MER1_type 1 73 -116 478 207 78 17 chr9 5031532 5031648 -137239796 + L1ME2 LINE L1 5700 5822 -344 1175 127 0 0 chr9 5031648 5031813 -137239631 - AluSg/x SINE Alu -14 298 134 1175 213 63 72 chr9 5031813 5032161 -137239283 + L1ME2 LINE L1 5819 6163 -1 1951 121 34 14 chr9 5032224 5032521 -137238923 - AluJb SINE Alu -9 303 1 270 250 18 71 chr9 5032559 5032671 -137238773 + LTR67 LTR ERVL 32 190 -367 2256 105 0 0 chr9 5032893 5033187 -137238257 + AluSq SINE Alu 6 299 -14 409 260 57 24 chr9 5033209 5033332 -137238112 + L2 LINE L2 3182 3308 -5 1753 160 21 63 chr9 5033697 5034078 -137237366 + MLT1A1 LTR MaLR 1 365 0 289 243 97 29 chr9 5034588 5034691 -137236753 + MIR SINE MIR 152 261 -1 288 309 78 123 chr9 5034886 5035245 -137236199 - L2 LINE L2 -13 3259 2917 291 140 0 0 chr9 5035269 5035319 -137236125 + (TG)n Simple_repeat Simple_repeat 2 51 0 254 292 43 75 chr9 5035396 5035557 -137235887 + MIR3 SINE MIR 17 172 -36 859 257 61 39 chr9 5036113 5036393 -137235051 + MLT1K LTR MaLR 138 423 -165 265 107 18 36 chr9 5036420 5036476 -137234968 + (GGGA)n Simple_repeat Simple_repeat 4 58 0 248 152 0 22 chr9 5036559 5036605 -137234839 + HSMAR1 DNA Mariner 1 45 -1242 2261 109 0 22 chr9 5036640 5036960 -137234484 - AluSq SINE Alu 0 313 1 234 250 0 0 chr9 5036978 5037026 -137234418 + MLT1K LTR MaLR 524 571 -17 2106 184 37 31 chr9 5037223 5037679 -137233765 + MLT1C LTR MaLR 3 461 -6 196 289 111 11 chr9 5039357 5039447 -137231997 - L2 LINE L2 -33 3239 3141 495 274 169 10 chr9 5039591 5039792 -137231652 - L1ME LINE L1 -307 5814 5582 1728 199 3 0 chr9 5040054 5040341 -137231103 + AluJb SINE Alu 1 288 -24 26 0 0 0 chr9 5040422 5040448 -137230996 + AT_rich Low_complexity Low_complexity 1 26 0 246 132 0 0 chr9 5042343 5042396 -137229048 + (TTTTA)n Simple_repeat Simple_repeat 4 56 0 2209 129 3 0 chr9 5042411 5042722 -137228722 - AluSx SINE Alu 0 312 1 329 274 133 0 chr9 5042800 5042935 -137228509 - MARNA DNA Mariner -199 387 235 979 112 0 42 chr9 5043175 5043318 -137228126 + AluJo SINE Alu 6 142 -170 271 62 0 0 chr9 5043318 5043350 -137228094 + AluSp/q SINE Alu 219 250 -53 1034 210 0 40 chr9 5043350 5043574 -137227870 + AluJo SINE Alu 85 299 -13 1885 211 25 3 chr9 5043998 5044354 -137227090 - MLT1A1 LTR MaLR -1 364 1 217 248 186 18 chr9 5044519 5044632 -137226812 + MIR3 SINE MIR 28 159 -49 764 292 65 27 chr9 5044804 5045322 -137226122 + MLT1K LTR MaLR 13 580 -8 730 20 41 0 chr9 5046137 5046235 -137225209 + (AATAG)n Simple_repeat Simple_repeat 3 104 0 1820 176 0 0 chr9 5046255 5046550 -137224894 + AluJo SINE Alu 1 295 -17 1864 152 13 23 chr9 5047753 5048062 -137223382 + AluJo SINE Alu 1 306 -6 299 253 137 11 chr9 5048198 5048293 -137223151 + MER103 DNA DNA 1 107 -59 2089 127 10 7 chr9 5048637 5048928 -137222516 - AluSq SINE Alu -21 292 1 221 245 0 0 chr9 5048995 5049044 -137222400 + (CATATA)n Simple_repeat Simple_repeat 6 54 0 2110 107 17 3 chr9 5049062 5049351 -137222093 + AluSg SINE Alu 1 293 -17 2002 100 0 8 chr9 5049558 5049817 -137221627 + AluSq SINE Alu 9 265 -48 243 88 0 0 chr9 5049949 5049983 -137221461 + (A)n Simple_repeat Simple_repeat 1 34 0 603 316 30 6 chr9 5050392 5050560 -137220884 + MLT1K LTR MaLR 2 173 -415 22 35 0 0 chr9 5050604 5050633 -137220811 + AT_rich Low_complexity Low_complexity 1 29 0 188 229 29 57 chr9 5050691 5050761 -137220683 - MIR SINE MIR -63 145 78 277 100 0 0 chr9 5050891 5050931 -137220513 - FRAM/FAM SINE Alu -93 82 43 385 250 136 15 chr9 5050931 5051063 -137220381 + MLT1K LTR MaLR 421 568 -20 235 259 151 0 chr9 5051179 5051318 -137220126 - MIR SINE MIR -6 256 89 252 272 160 0 chr9 5051902 5052027 -137219417 - MIR SINE MIR -115 147 3 549 201 86 65 chr9 5052425 5052564 -137218880 + FLAM_C SINE Alu 1 142 -1 1102 113 6 0 chr9 5054478 5054637 -137216807 + L1PA10 LINE L1 6008 6167 -1 962 164 53 0 chr9 5054694 5054846 -137216598 + FRAM SINE Alu 1 155 -21 1763 201 105 62 chr9 5055797 5056383 -137215061 + MLT1E2 LTR MaLR 1 624 0 1203 246 163 12 chr9 5056666 5057065 -137214379 + LTR40c LTR ERVL 6 464 -1 28 61 0 0 chr9 5058040 5058089 -137213355 + AT_rich Low_complexity Low_complexity 1 49 0 675 164 9 0 chr9 5058344 5058454 -137212990 - FLAM_A SINE Alu -13 129 19 442 269 32 106 chr9 5058615 5058897 -137212547 - L2 LINE L2 -7 3306 3046 325 138 35 0 chr9 5059395 5059453 -137211991 - MER5B DNA MER1_type -3 175 116 2229 187 52 23 chr9 5059453 5059977 -137211467 + L1MB8 LINE L1 4788 5326 -820 418 184 41 19 chr9 5059983 5060224 -137211220 + AluJo SINE Alu 4 301 -11 4362 164 23 26 chr9 5060234 5061079 -137210365 + L1MB8 LINE L1 5336 6177 -1 2497 75 7 0 chr9 5063074 5063381 -137208063 - AluSg SINE Alu -1 309 1 2504 57 7 0 chr9 5064535 5064831 -137206613 + AluY SINE Alu 1 298 -13 671 258 56 56 chr9 5064832 5065065 -137206379 + MIR SINE MIR 8 240 -22 25 75 0 0 chr9 5065158 5065211 -137206233 + AT_rich Low_complexity Low_complexity 1 53 0 321 157 0 0 chr9 5065320 5065371 -137206073 + MER66A LTR ERV1 287 337 -141 206 333 81 9 chr9 5065558 5065669 -137205775 - MIR SINE MIR -123 139 21 2380 75 0 3 chr9 5065975 5066270 -137205174 + AluY SINE Alu 1 294 -17 231 36 0 0 chr9 5067645 5067673 -137203771 + (A)n Simple_repeat Simple_repeat 1 28 0 2077 111 31 0 chr9 5070978 5071267 -137200177 + AluSx SINE Alu 2 299 -13 443 274 127 6 chr9 5073043 5073200 -137198244 + Charlie8 DNA MER1_type 110 285 -2132 240 319 118 0 chr9 5075459 5075578 -137195866 - MIR SINE MIR -6 256 124 301 270 60 60 chr9 5075934 5076149 -137195295 + L1MC4 LINE L1 7809 8023 -19 28 29 0 0 chr9 5076283 5076318 -137195126 + AT_rich Low_complexity Low_complexity 1 35 0 22 35 0 0 chr9 5077073 5077102 -137194342 + AT_rich Low_complexity Low_complexity 1 29 0 612 294 63 25 chr9 5079031 5079269 -137192175 + MIR SINE MIR 13 259 -3 241 307 0 13 chr9 5079307 5079382 -137192062 - Charlie4 DNA MER1_type 0 1961 1888 253 242 129 40 chr9 5080836 5080960 -137190484 + L1MC/D LINE L1 5689 5823 -1985 182 288 0 15 chr9 5082469 5082535 -137188909 - MIR SINE MIR -183 79 15 504 284 95 9 chr9 5083239 5083450 -137187994 + MIR SINE MIR 18 246 -16 25 0 0 0 chr9 5083707 5083732 -137187712 + AT_rich Low_complexity Low_complexity 1 25 0 272 319 0 0 chr9 5084696 5084790 -137186654 + MIR SINE MIR 169 262 0 217 345 115 0 chr9 5085195 5085334 -137186110 + MIR SINE MIR 61 215 -47 2482 76 7 0 chr9 5085373 5085675 -137185769 - AluSc SINE Alu -5 304 1 316 294 59 64 chr9 5086186 5086373 -137185071 + MIR3 SINE MIR 12 197 -11 1257 159 34 0 chr9 5086519 5086727 -137184717 + AluJo SINE Alu 86 300 -12 397 242 47 8 chr9 5087096 5087224 -137184220 + MIR3 SINE MIR 62 194 -14 524 289 13 0 chr9 5088231 5088383 -137183061 - MER102a DNA MER1_type 0 330 177 194 125 0 25 chr9 5088468 5088508 -137182936 + (CCA)n Simple_repeat Simple_repeat 3 41 0 21 0 0 0 chr9 5089428 5089449 -137181995 + AT_rich Low_complexity Low_complexity 1 21 0 2366 46 70 0 chr9 5090015 5090300 -137181144 - AluY SINE Alu -6 305 1 357 82 0 0 chr9 5090424 5090473 -137180971 + (CA)n Simple_repeat Simple_repeat 1 49 0 1270 167 58 109 chr9 5091946 5092257 -137179187 - AluJb SINE Alu -17 295 1 628 135 162 18 chr9 5092262 5092373 -137179071 - FLAM_C SINE Alu -5 128 2 381 175 0 0 chr9 5092391 5092448 -137178996 - AluJ/FLAM SINE Alu -244 58 2 1324 183 117 11 chr9 5093022 5093295 -137178149 + AluSx SINE Alu 1 302 -10 471 261 11 50 chr9 5093636 5093816 -137177628 + L1MC4a LINE L1 5710 5882 -1926 198 0 0 0 chr9 5094901 5094923 -137176521 + (A)n Simple_repeat Simple_repeat 1 22 0 30 0 0 0 chr9 5095340 5095370 -137176074 + AT_rich Low_complexity Low_complexity 1 30 0 1776 152 24 20 chr9 5095371 5095667 -137175777 - AluJo SINE Alu -13 299 3 228 283 0 0 chr9 5095688 5095734 -137175710 + polypurine Low_complexity Low_complexity 4 49 0 822 246 26 26 chr9 5096232 5096427 -137175017 + MSTD LTR MaLR 1 195 -201 615 237 0 8 chr9 5096429 5096560 -137174884 + FLAM_A SINE Alu 4 133 -9 992 213 29 24 chr9 5096562 5096769 -137174675 + MSTD LTR MaLR 187 394 -2 291 330 9 9 chr9 5096826 5096932 -137174512 - MIR SINE MIR -135 127 22 659 244 8 0 chr9 5096932 5097063 -137174381 - FLAM_C SINE Alu -1 132 1 317 330 84 6 chr9 5097164 5097343 -137174101 - MER112 DNA MER1_type -18 242 50 497 116 16 132 chr9 5098292 5098377 -137173067 - L1PB4 LINE L1 0 6156 6063 189 0 0 0 chr9 5098377 5098398 -137173046 + (TTTTG)n Simple_repeat Simple_repeat 2 22 0 2348 49 0 0 chr9 5098398 5098664 -137172780 - AluSc SINE Alu -29 280 15 497 116 16 132 chr9 5098664 5098706 -137172738 - L1PB4 LINE L1 -91 6065 6043 252 163 23 0 chr9 5098839 5098882 -137172562 - MER1B DNA MER1_type 0 329 286 978 163 0 18 chr9 5098882 5099048 -137172396 + MER1B DNA MER1_type 122 284 -55 23 0 0 0 chr9 5099241 5099264 -137172180 + AT_rich Low_complexity Low_complexity 1 23 0 2113 111 30 3 chr9 5099306 5099604 -137171840 - AluSc SINE Alu -3 306 1 21 0 0 0 chr9 5099810 5099831 -137171613 + AT_rich Low_complexity Low_complexity 1 21 0 2342 107 0 0 chr9 5099984 5100292 -137171152 + AluSq SINE Alu 1 308 -5 1925 119 0 80 chr9 5100408 5100745 -137170699 + AluJb SINE Alu 1 310 -2 25 51 0 0 chr9 5100821 5100860 -137170584 + AT_rich Low_complexity Low_complexity 1 39 0 203 138 0 0 chr9 5102336 5102365 -137169079 + (TTCA)n Simple_repeat Simple_repeat 2 30 0 554 175 143 0 chr9 5102819 5102945 -137168499 + MIR SINE MIR 13 156 -106 2322 102 7 3 chr9 5103519 5103822 -137167622 - AluSx SINE Alu -6 306 3 389 221 14 83 chr9 5104203 5104348 -137167096 - MIR SINE MIR -71 191 57 564 278 125 33 chr9 5104440 5105005 -137166439 - L2 LINE L2 -2 3270 2646 250 302 63 45 chr9 5105086 5105308 -137166136 - MIR SINE MIR -13 249 24 636 206 58 5 chr9 5106047 5106148 -137165296 - MER5C DNA MER1_type -50 274 180 1617 131 21 100 chr9 5106148 5106477 -137164967 - AluYb8 SINE Alu -15 303 1 636 206 58 5 chr9 5106477 5106564 -137164880 - MER5C DNA MER1_type -144 180 76 369 189 131 143 chr9 5106878 5107053 -137164391 + MER106B DNA MER1_type 7 1002 -57 1035 184 9 55 chr9 5107597 5107661 -137163783 - MER3 DNA MER1_type -1 208 143 909 119 0 15 chr9 5107661 5107795 -137163649 + FLAM_C SINE Alu 1 132 -1 1035 184 9 55 chr9 5107795 5107947 -137163497 - MER3 DNA MER1_type -66 143 2 624 242 55 28 chr9 5107978 5108160 -137163284 + MIR SINE MIR 2 188 -74 246 254 0 0 chr9 5108192 5108251 -137163193 + (TTA)n Simple_repeat Simple_repeat 2 60 0 322 313 37 12 chr9 5110439 5110602 -137160842 + L1ME4a LINE L1 5736 5902 -219 21 71 0 0 chr9 5110736 5110778 -137160666 + AT_rich Low_complexity Low_complexity 1 42 0 2124 124 3 0 chr9 5110871 5111175 -137160269 + AluSx SINE Alu 1 305 0 1400 148 14 9 chr9 5111766 5111982 -137159462 + AluSx SINE Alu 1 217 -95 23 33 0 0 chr9 5112064 5112094 -137159350 + AT_rich Low_complexity Low_complexity 1 30 0 745 125 8 33 chr9 5112094 5112214 -137159230 - FLAM_C SINE Alu -16 117 1 2443 91 0 10 chr9 5112222 5112530 -137158914 - AluSx SINE Alu -7 305 1 2556 38 3 10 chr9 5112788 5113101 -137158343 - L1PA2 LINE L1 -215 5940 5630 1816 33 0 0 chr9 5113076 5113288 -137158156 + L1PA2 LINE L1 5944 6155 0 * 435 287 172 4 chr9 5113773 5114017 -137157427 - L3 LINE CR1 -45 1532 1248 299 354 35 0 chr9 5113988 5114101 -137157343 + L3 LINE CR1 1237 1353 -224 * 231 146 0 0 chr9 5114243 5114284 -137157160 + (CA)n Simple_repeat Simple_repeat 2 42 0 508 256 34 0 chr9 5114664 5114781 -137156663 + MER45A DNA AcHobo 58 178 0 1941 132 170 16 chr9 5115497 5115868 -137155576 - MSTA LTR MaLR 0 428 1 866 132 0 22 chr9 5116727 5116863 -137154581 + FLAM_C SINE Alu 6 138 -5 22 35 0 0 chr9 5117439 5117468 -137153976 + AT_rich Low_complexity Low_complexity 1 29 0 3364 176 15 45 chr9 5117992 5118298 -137153146 - MER82 DNA MER2_type 0 653 339 1849 168 7 0 chr9 5118298 5118589 -137152855 + AluJo SINE Alu 5 297 -15 1623 157 95 4 chr9 5118595 5118869 -137152575 + AluJo SINE Alu 1 299 -13 3364 176 15 45 chr9 5118869 5119226 -137152218 - MER82 DNA MER2_type -319 334 3 1002 254 29 41 chr9 5119339 5119681 -137151763 - MER46C DNA MER2_type 0 338 1 345 258 31 21 chr9 5119976 5120073 -137151371 - L2 LINE L2 -9 3263 3166 2348 95 3 0 chr9 5120533 5120827 -137150617 - AluSx SINE Alu -17 295 1 1035 126 16 60 chr9 5120912 5121094 -137150350 + FRAM SINE Alu 1 168 -8 2852 66 56 13 chr9 5121135 5121531 -137149913 + L1PA12 LINE L1 5741 6153 -15 2190 108 0 3 chr9 5121550 5121864 -137149580 + AluSx SINE Alu 1 313 0 1909 166 0 7 chr9 5122703 5123005 -137148439 - AluJb SINE Alu -12 300 1 264 256 51 34 chr9 5123461 5123578 -137147866 + MIR SINE MIR 94 212 -50 187 296 43 62 chr9 5125720 5125882 -137145562 - L2 LINE L2 -181 3091 2933 225 338 39 26 chr9 5127295 5127449 -137143995 - L2 LINE L2 -178 3094 2939 2312 99 3 0 chr9 5127636 5127930 -137143514 - AluSx SINE Alu -16 296 2 338 304 181 24 chr9 5127931 5128312 -137143132 - L2 LINE L2 -601 2713 2273 567 255 87 10 chr9 5128376 5128572 -137142872 + MIR SINE MIR 43 253 -9 417 301 56 4 chr9 5128570 5128819 -137142625 - L2 LINE L2 -1114 2200 1939 * 230 143 57 0 chr9 5128891 5128926 -137142518 - MER3 DNA MER1_type -2 207 171 * 436 171 98 0 chr9 5128911 5128993 -137142451 - MER3 DNA MER1_type -118 91 2 1806 174 0 32 chr9 5130095 5130411 -137141033 + AluJb SINE Alu 1 306 -6 2017 148 0 0 chr9 5130455 5130752 -137140692 + AluJb SINE Alu 1 297 -15 459 0 0 0 chr9 5130758 5130809 -137140635 + (TG)n Simple_repeat Simple_repeat 2 52 0 258 215 0 0 chr9 5130874 5130953 -137140491 + (TAG)n Simple_repeat Simple_repeat 2 80 0 277 300 0 0 chr9 5130954 5131034 -137140410 + (CAG)n Simple_repeat Simple_repeat 1 80 0 575 66 0 0 chr9 5131055 5131131 -137140313 - L1PA8 LINE L1 -2 6170 6095 562 302 74 23 chr9 5131142 5131357 -137140087 - MIR SINE MIR -15 247 22 645 298 41 5 chr9 5133732 5133950 -137137494 + MIR SINE MIR 25 250 -12 270 0 0 0 chr9 5134010 5134040 -137137404 + (TC)n Simple_repeat Simple_repeat 1 30 0 270 0 0 0 chr9 5134039 5134069 -137137375 + (CA)n Simple_repeat Simple_repeat 1 30 0 207 69 0 0 chr9 5136370 5136399 -137135045 + (TA)n Simple_repeat Simple_repeat 1 29 0 1640 204 3 0 chr9 5137721 5138015 -137133429 - AluJb SINE Alu -12 300 6 1813 162 13 7 chr9 5138211 5138514 -137132930 + AluJb SINE Alu 1 305 -7 374 332 101 5 chr9 5139218 5139426 -137132018 + MIR SINE MIR 28 255 -7 2200 108 0 0 chr9 5140094 5140380 -137131064 - AluSx SINE Alu -26 286 1 2420 90 0 0 chr9 5142189 5142490 -137128954 + AluSx SINE Alu 1 301 -11 637 228 124 5 chr9 5142535 5142737 -137128707 - MIR SINE MIR -22 240 15 953 197 95 61 chr9 5142836 5143100 -137128344 + L1MA10 LINE L1 6062 6334 0 628 226 92 36 chr9 5143121 5143314 -137128130 - MIR SINE MIR -21 241 38 230 280 66 117 chr9 5143663 5144348 -137127096 + L2 LINE L2 1745 2394 -920 2336 69 13 10 chr9 5144363 5144667 -137126777 - AluY SINE Alu -5 306 2 901 254 42 5 chr9 5147114 5147327 -137124117 - MIR SINE MIR 0 262 42 820 146 7 42 chr9 5147331 5147475 -137123969 + FLAM_C SINE Alu 5 143 0 450 0 0 0 chr9 5147476 5147526 -137123918 + (CA)n Simple_repeat Simple_repeat 2 51 0 2190 135 5 53 chr9 5149072 5149451 -137121993 - MER46B DNA MER2_type 0 236 1 217 180 0 66 chr9 5149496 5149557 -137121887 + T-rich Low_complexity Low_complexity 3 59 0 2128 165 46 6 chr9 5149654 5150005 -137121439 - MLT1A1 LTR MaLR 0 365 1 258 106 0 0 chr9 5150617 5150664 -137120780 + (GA)n Simple_repeat Simple_repeat 1 47 0 262 213 197 57 chr9 5151148 5151270 -137120174 + MIR SINE MIR 81 219 -43 427 131 0 24 chr9 5151328 5151412 -137120032 + (TTCC)n Simple_repeat Simple_repeat 3 84 0 691 191 27 48 chr9 5152946 5153093 -137118351 + MIR SINE MIR 64 207 -55 2257 107 17 0 chr9 5153306 5153606 -137117838 + AluSg SINE Alu 1 305 -5 466 283 133 52 chr9 5153750 5154150 -137117294 - L2 LINE L2 -54 3259 2828 189 254 102 0 chr9 5154193 5154252 -137117192 - L3 LINE CR1 -324 1253 1189 784 163 16 8 chr9 5154574 5154703 -137116741 - FLAM_C SINE Alu -3 130 1 217 208 51 168 chr9 5155254 5155451 -137115993 + L2 LINE L2 2992 3165 -107 239 301 38 30 chr9 5155619 5155752 -137115692 + L1ME4a LINE L1 5795 5928 -193 291 263 66 46 chr9 5155760 5155912 -137115532 + L1ME4a LINE L1 5961 6115 -6 21 0 0 0 chr9 5155926 5155947 -137115497 + AT_rich Low_complexity Low_complexity 1 21 0 43573 32 24 1 chr9 5155956 5161968 -137109476 + L1PA3 LINE L1 2 6155 0 25 0 0 0 chr9 5161982 5162007 -137109437 + AT_rich Low_complexity Low_complexity 1 25 0 667 263 0 15 chr9 5162035 5162168 -137109276 - AluJo/FRAM SINE Alu -47 265 135 1413 183 141 8 chr9 5162168 5162430 -137109014 - AluJo SINE Alu -5 297 1 276 320 50 50 chr9 5162523 5162723 -137108721 + L2 LINE L2 2885 3084 -188 270 116 0 0 chr9 5162925 5162968 -137108476 + (TTCA)n Simple_repeat Simple_repeat 3 45 0 1969 152 7 7 chr9 5163102 5163412 -137108032 + AluSx SINE Alu 1 310 -2 1937 147 3 0 chr9 5163747 5164039 -137107405 - AluSx SINE Alu -19 293 1 482 237 21 0 chr9 5164791 5164888 -137106556 + MER81 DNA DNA 2 100 -14 22 0 0 0 chr9 5165421 5165443 -137106001 + AT_rich Low_complexity Low_complexity 1 22 0 180 255 21 0 chr9 5165657 5165704 -137105740 + L2 LINE L2 3225 3272 0 224 179 30 60 chr9 5166086 5166153 -137105291 - MIR SINE MIR -94 168 104 1828 145 24 17 chr9 5166153 5166442 -137105002 + AluJb SINE Alu 1 291 -21 212 270 54 14 chr9 5166462 5166536 -137104908 - MIR SINE MIR -93 115 39 2364 92 3 0 chr9 5166737 5167041 -137104403 - AluSp SINE Alu -8 305 1 529 246 36 0 chr9 5167453 5167563 -137103881 + MER81 DNA DNA 1 114 0 349 226 151 8 chr9 5167659 5167799 -137103645 + L1ME4a LINE L1 1194 6108 -13 2278 91 3 3 chr9 5169305 5169601 -137101843 - AluSx SINE Alu -3 309 14 785 196 141 0 chr9 5170539 5170702 -137100742 + MER5A DNA MER1_type 4 189 0 201 260 29 96 chr9 5170790 5170894 -137100550 + MIR SINE MIR 37 133 -75 1168 170 25 34 chr9 5171435 5171645 -137099799 + Charlie1 DNA MER1_type 1 210 -2551 2373 94 3 0 chr9 5171645 5171944 -137099500 - AluSp SINE Alu -13 300 1 1168 170 25 34 chr9 5171944 5171968 -137099476 + Charlie1 DNA MER1_type 210 233 -2528 647 188 38 0 chr9 5171957 5172090 -137099354 + Charlie1 DNA MER1_type 2619 2756 -5 * 312 311 75 12 chr9 5172760 5172921 -137098523 + L3b LINE CR1 1201 1371 -212 2415 73 0 0 chr9 5173154 5173471 -137097973 + AluSp SINE Alu 1 317 0 258 291 9 9 chr9 5174338 5174448 -137096996 + L1ME4a LINE L1 5817 5926 -195 2285 111 0 0 chr9 5174607 5174905 -137096539 + AluSx SINE Alu 6 303 -9 772 236 153 63 chr9 5176040 5176139 -137095305 + L1ME4a LINE L1 5623 5712 -409 1428 206 153 73 chr9 5176139 5176875 -137094569 + LTR50 LTR ERVL 1 795 0 772 236 153 63 chr9 5176875 5177233 -137094211 + L1ME4a LINE L1 5712 6121 0 496 156 13 0 chr9 5177242 5177319 -137094125 + AluJ/FLAM SINE Alu 7 84 -228 4123 100 32 12 chr9 5177964 5178565 -137092879 + L1MA3 LINE L1 5692 6304 -1 30 27 0 0 chr9 5178569 5178606 -137092838 + AT_rich Low_complexity Low_complexity 1 37 0 1729 127 0 4 chr9 5178611 5178870 -137092574 - AluSx SINE Alu -21 291 34 24 0 0 0 chr9 5178884 5178908 -137092536 + AT_rich Low_complexity Low_complexity 1 24 0 606 258 145 14 chr9 5179467 5179688 -137091756 - MIR SINE MIR 0 262 13 258 219 16 0 chr9 5179906 5179970 -137091474 + L1MC4 LINE L1 6655 6719 -1323 273 148 0 82 chr9 5179976 5180037 -137091407 - MIR SINE MIR -87 175 120 1772 240 41 7 chr9 5180039 5180452 -137090992 + L1ME1 LINE L1 5715 6141 -25 180 349 35 35 chr9 5180482 5180568 -137090876 - MIR SINE MIR -78 130 45 820 231 95 18 chr9 5180919 5181140 -137090304 - MIR SINE MIR -16 246 9 23 0 0 0 chr9 5181453 5181476 -137089968 + AT_rich Low_complexity Low_complexity 1 23 0 608 332 16 24 chr9 5181937 5182190 -137089254 + MIR SINE MIR 7 257 -5 1292 125 100 0 chr9 5182191 5182391 -137089053 - AluSg/x SINE Alu -7 305 86 2385 87 0 0 chr9 5182470 5182768 -137088676 + AluSx SINE Alu 1 298 -14 21 0 0 0 chr9 5184045 5184066 -137087378 + AT_rich Low_complexity Low_complexity 1 21 0 216 336 136 18 chr9 5185837 5185947 -137085497 - L2 LINE L2 -5 3267 3145 1084 214 140 84 chr9 5186001 5186394 -137085050 + MER20B DNA MER1_type 3 417 -366 705 250 66 0 chr9 5186410 5186622 -137084822 + MER20B DNA MER1_type 558 783 0 806 303 73 23 chr9 5187050 5187675 -137083769 + L2 LINE L2 2590 3253 -60 229 288 41 27 chr9 5187868 5187941 -137083503 + L2 LINE L2 3239 3312 -1 301 291 13 0 chr9 5188011 5188090 -137083354 + MIR3 SINE MIR 109 188 -20 404 250 24 40 chr9 5188120 5188244 -137083200 - L2 LINE L2 0 3272 3151 2086 115 0 3 chr9 5188360 5188669 -137082775 - AluSq SINE Alu 0 308 1 1263 102 0 0 chr9 5188929 5189095 -137082349 - AluSg/x SINE Alu 0 310 145 531 340 15 15 chr9 5189105 5189302 -137082142 + MIR SINE MIR 32 228 -34 386 272 34 60 chr9 5189973 5190147 -137081297 - MIR SINE MIR -11 197 28 578 194 0 20 chr9 5191418 5191516 -137079928 + MER2 DNA MER2_type 2 97 -248 1432 168 31 8 chr9 5191573 5191829 -137079615 + MER2 DNA MER2_type 83 344 -1 1683 170 18 0 chr9 5191922 5192224 -137079220 - AluJb SINE Alu 0 307 1 2027 135 0 0 chr9 5193162 5193450 -137077994 - AluSg SINE Alu -10 300 13 1986 136 0 19 chr9 5193879 5194187 -137077257 + AluSx SINE Alu 1 302 -10 1272 166 89 76 chr9 5194221 5194523 -137076921 + AluJb SINE Alu 1 306 -6 252 0 0 0 chr9 5194815 5194843 -137076601 + (TC)n Simple_repeat Simple_repeat 1 28 0 * 351 0 0 0 chr9 5194842 5194881 -137076563 + (CA)n Simple_repeat Simple_repeat 1 39 0 1118 170 71 20 chr9 5195063 5195316 -137076128 - MER58B DNA MER1_type 0 341 76 674 162 115 0 chr9 5195316 5195464 -137075980 + L1MB7 LINE L1 5572 5736 -448 2119 111 40 12 chr9 5195464 5195789 -137075655 - MSTC LTR MaLR 0 428 95 1991 182 43 0 chr9 5195789 5196157 -137075287 + L1MB7 LINE L1 5785 6168 -16 418 259 12 0 chr9 5196157 5196242 -137075202 - MER58B DNA MER1_type -252 89 4 198 0 0 0 chr9 5196280 5196302 -137075142 + (CA)n Simple_repeat Simple_repeat 2 23 0 25 51 0 0 chr9 5196359 5196398 -137075046 + AT_rich Low_complexity Low_complexity 1 39 0 198 71 0 0 chr9 5196775 5196803 -137074641 + (TAA)n Simple_repeat Simple_repeat 1 28 0 2129 115 82 6 chr9 5196905 5197235 -137074209 + L1PA13 LINE L1 5808 6162 -1 2212 121 3 0 chr9 5197466 5197771 -137073673 + AluSx SINE Alu 1 306 -6 2079 147 0 0 chr9 5197992 5198291 -137073153 - AluSx SINE Alu -13 299 1 4880 93 10 42 chr9 5198519 5198574 -137072870 - L1PB1 LINE L1 0 6151 6096 2387 42 0 3 chr9 5198574 5198890 -137072554 + AluY SINE Alu 1 315 0 4880 93 10 42 chr9 5198890 5199219 -137072225 - L1PB1 LINE L1 -55 6096 5797 297 0 0 0 chr9 5199219 5199252 -137072192 + (CA)n Simple_repeat Simple_repeat 2 34 0 4880 93 10 42 chr9 5199252 5199575 -137071869 - L1PB1 LINE L1 -354 5797 5465 574 286 10 41 chr9 5199594 5199790 -137071654 - MIR SINE MIR -71 191 2 1064 210 8 8 chr9 5200545 5200812 -137070632 + L1MB7 LINE L1 3063 3329 -2817 1963 143 27 0 chr9 5200814 5200981 -137070463 - AluSx SINE Alu -10 302 122 459 0 0 0 chr9 5200981 5201032 -137070412 + (TG)n Simple_repeat Simple_repeat 2 52 0 1963 143 27 0 chr9 5201032 5201157 -137070287 - AluSx SINE Alu -190 122 2 953 205 0 0 chr9 5201167 5201333 -137070111 - AluJb SINE Alu -20 292 127 8144 181 67 34 chr9 5201374 5202295 -137069149 + L1MB7 LINE L1 3341 4231 -1953 1636 99 0 5 chr9 5202295 5202516 -137068928 + AluSp SINE Alu 1 220 -93 246 146 0 0 chr9 5202516 5202564 -137068880 + AluSp SINE Alu 256 303 0 8144 181 67 34 chr9 5202564 5202724 -137068720 + L1MB7 LINE L1 4231 4384 -1800 2170 116 30 0 chr9 5202724 5203027 -137068417 + AluSp SINE Alu 1 312 -1 8144 181 67 34 chr9 5203027 5203804 -137067640 + L1MB7 LINE L1 4384 5318 -866 1791 168 3 25 chr9 5203804 5204119 -137067325 + AluJo SINE Alu 1 308 -4 8144 181 67 34 chr9 5204119 5204432 -137067012 + L1MB7 LINE L1 5318 5619 -565 4081 117 130 7 chr9 5204432 5205131 -137066313 - LTR1 LTR ERV1 0 785 1 2506 165 28 7 chr9 5205174 5205610 -137065834 + L1MB7 LINE L1 5616 6060 -124 2356 108 0 6 chr9 5205693 5206007 -137065437 - AluSx SINE Alu 0 312 1 1720 173 0 0 chr9 5206314 5206592 -137064852 + AluJb SINE Alu 2 279 -33 615 27 0 0 chr9 5206594 5206667 -137064777 + (GGAA)n Simple_repeat Simple_repeat 3 75 0 1015 157 30 35 chr9 5207490 5207688 -137063756 + MLT1C LTR MaLR 1 197 -270 721 220 58 73 chr9 5207718 5207977 -137063467 - MER93b LTR ERV1 -5 368 114 642 220 61 0 chr9 5207974 5208106 -137063338 - MER93b LTR ERV1 -216 157 18 * 1008 233 124 8 chr9 5208124 5208373 -137063071 + MLT1C LTR MaLR 190 467 0 1492 128 163 8 chr9 5208867 5209125 -137062319 + AluSg1 SINE Alu 1 298 -11 9156 52 50 0 chr9 5209481 5211296 -137060148 + L1PA5 LINE L1 4289 6141 -13 470 296 145 0 chr9 5217803 5217989 -137053455 - MIR SINE MIR -3 259 47 283 299 226 0 chr9 5218096 5218313 -137053131 + L2 LINE L2 2003 2268 -1046 26 82 0 0 chr9 5219111 5219172 -137052272 + AT_rich Low_complexity Low_complexity 1 61 0 822 259 160 32 chr9 5219211 5219265 -137052179 + L1MC4a LINE L1 5491 5537 -2271 1849 174 126 51 chr9 5219265 5219525 -137051919 - MLT1D LTR MaLR 0 505 266 2390 110 0 0 chr9 5219525 5219834 -137051610 - AluSx SINE Alu -3 309 1 1849 174 126 51 chr9 5219834 5220043 -137051401 - MLT1D LTR MaLR -239 266 1 822 259 160 32 chr9 5220043 5220389 -137051055 + L1MC4a LINE L1 5537 5942 -1866 2252 111 3 0 chr9 5221580 5221886 -137049558 + AluSx SINE Alu 1 307 -5 329 274 10 20 chr9 5221903 5222005 -137049439 - L1MCa LINE L1 -4358 2068 1968 714 212 62 36 chr9 5222194 5222241 -137049203 - MER3 DNA MER1_type -11 198 154 2118 109 0 3 chr9 5222241 5222546 -137048898 - AluSq SINE Alu 0 304 1 714 212 62 36 chr9 5222546 5222690 -137048754 - MER3 DNA MER1_type -55 154 1 289 211 40 0 chr9 5222690 5222766 -137048678 + L1MC5 LINE L1 7330 7408 -553 834 182 8 0 chr9 5222797 5222969 -137048475 + AluJb SINE Alu 150 322 0 2290 88 0 7 chr9 5222970 5223254 -137048190 + AluSp SINE Alu 1 282 -31 418 257 41 104 chr9 5223279 5223479 -137047965 + L1MC5 LINE L1 7474 7685 -357 2230 116 0 3 chr9 5223479 5223782 -137047662 - AluSp SINE Alu -11 302 1 418 257 41 104 chr9 5223782 5224089 -137047355 + L1MC5 LINE L1 7685 8015 -27 1605 183 14 10 chr9 5224110 5224399 -137047045 + AluJo SINE Alu 1 290 -22 2430 83 0 0 chr9 5224597 5224899 -137046545 - AluY SINE Alu -9 302 1 760 200 8 0 chr9 5225443 5225563 -137045881 + FLAM_A SINE Alu 1 121 -12 752 321 74 32 chr9 5225755 5226226 -137045218 - L2 LINE L2 0 3313 2823 2280 88 0 29 chr9 5226232 5226539 -137044905 + AluSx SINE Alu 1 298 -14 362 250 11 11 chr9 5226593 5226685 -137044759 + MLT1L LTR MaLR 1 92 -523 587 293 26 60 chr9 5226709 5226975 -137044469 + MLT1L LTR MaLR 206 462 -153 353 147 0 15 chr9 5226975 5227043 -137044401 + (TTCCC)n Simple_repeat Simple_repeat 2 68 0 1562 139 120 8 chr9 5227043 5227309 -137044135 - AluSg1 SINE Alu -13 296 1 343 296 133 0 chr9 5227310 5227445 -137043999 + MLT1L LTR MaLR 450 602 -13 1196 290 159 15 chr9 5227456 5228067 -137043377 - L2 LINE L2 -580 2734 2036 254 231 0 0 chr9 5228068 5228120 -137043324 - MIR SINE MIR -7 255 204 430 301 143 40 chr9 5228385 5228459 -137042985 - L1MC4a LINE L1 -1757 6051 5986 342 0 0 0 chr9 5228459 5228497 -137042947 + (CA)n Simple_repeat Simple_repeat 2 39 0 430 301 143 40 chr9 5228497 5229017 -137042427 - L1MC4a LINE L1 -1822 5986 5396 317 329 129 7 chr9 5229032 5229172 -137042272 + MIR SINE MIR 17 173 -89 335 306 43 3 chr9 5231486 5231586 -137039858 - MIR SINE MIR -102 106 2 1592 85 42 5 chr9 5231593 5231805 -137039639 + AluSp SINE Alu 75 294 -19 2100 115 0 50 chr9 5232312 5232486 -137038958 - AluSx SINE Alu -5 307 155 2296 85 7 3 chr9 5232486 5232781 -137038663 - AluY SINE Alu -15 296 1 2100 115 0 50 chr9 5232781 5232929 -137038515 - AluSx SINE Alu -157 155 1 202 146 62 0 chr9 5233106 5233154 -137038290 + (TTATA)n Simple_repeat Simple_repeat 3 53 0 229 139 66 7 chr9 5233156 5233307 -137038137 + (TA)n Simple_repeat Simple_repeat 2 161 0 222 361 0 0 chr9 5233691 5233763 -137037681 - L2 LINE L2 -445 2869 2798 2129 124 0 0 chr9 5234160 5234443 -137037001 + AluSc SINE Alu 1 283 -26 217 328 0 0 chr9 5234745 5234803 -137036641 - L2 LINE L2 -8 3264 3207 279 269 0 26 chr9 5235677 5235755 -137035689 - MIR3 SINE MIR -36 172 97 1663 183 10 28 chr9 5236037 5236327 -137035117 + AluJb SINE Alu 1 285 -27 1638 127 58 7 chr9 5236925 5237233 -137034211 + MER33 DNA MER1_type 1 324 0 2197 138 0 0 chr9 5237553 5237858 -137033586 + AluJo SINE Alu 1 305 -7 2256 89 0 7 chr9 5238163 5238454 -137032990 - AluSg SINE Alu -21 289 1 22 0 0 0 chr9 5238497 5238519 -137032925 + AT_rich Low_complexity Low_complexity 1 22 0 22 56 0 0 chr9 5238912 5238948 -137032496 + AT_rich Low_complexity Low_complexity 1 36 0 295 332 101 10 chr9 5239274 5239473 -137031971 - L2 LINE L2 -221 3051 2835 22 35 0 0 chr9 5239639 5239668 -137031776 + AT_rich Low_complexity Low_complexity 1 29 0 605 269 48 32 chr9 5239845 5240094 -137031350 - ERVL LTR ERVL -849 4915 4663 1011 303 63 30 chr9 5240250 5240775 -137030669 - ERVL LTR ERVL -1126 4638 4097 365 316 23 11 chr9 5240928 5241105 -137030339 - ERVL LTR ERVL -2805 2959 2781 2166 78 30 0 chr9 5241330 5241626 -137029818 - L1PA12 LINE L1 -4 6164 5860 30 0 0 0 chr9 5242003 5242033 -137029411 + AT_rich Low_complexity Low_complexity 1 30 0 2370 76 0 0 chr9 5242429 5242718 -137028726 - AluSq SINE Alu -16 297 9 377 208 176 0 chr9 5242764 5242889 -137028555 + L1ME4a LINE L1 5974 6120 -1 1693 197 3 3 chr9 5243317 5243617 -137027827 + AluJb SINE Alu 1 300 -12 22 0 0 0 chr9 5243617 5243639 -137027805 + AT_rich Low_complexity Low_complexity 1 22 0 875 236 100 9 chr9 5243917 5244146 -137027298 - MIR SINE MIR -12 250 1 1617 209 3 0 chr9 5244245 5244532 -137026912 - AluJo SINE Alu -20 292 5 2249 117 3 0 chr9 5244747 5245045 -137026399 + AluSg SINE Alu 1 299 -11 748 189 69 19 chr9 5245351 5245510 -137025934 - AluJo SINE Alu -24 288 122 1481 194 3 26 chr9 5245649 5245953 -137025491 - AluJo SINE Alu -15 297 1 2096 99 18 7 chr9 5245960 5246242 -137025202 - AluSx SINE Alu -27 285 1 710 179 0 30 chr9 5246519 5246653 -137024791 + FLAM_C SINE Alu 2 131 -2 22 0 0 0 chr9 5247862 5247884 -137023560 + AT_rich Low_complexity Low_complexity 1 22 0 351 293 75 45 chr9 5248298 5248431 -137023013 - L2 LINE L2 0 3272 3136 300 228 97 28 chr9 5248432 5248577 -137022867 + L1ME4a LINE L1 5713 5867 -254 450 261 85 13 chr9 5248684 5248837 -137022607 + L1ME4a LINE L1 5494 5657 -505 625 210 29 0 chr9 5248840 5248978 -137022466 + Charlie1 DNA MER1_type 5 146 -2615 * 1208 141 71 24 chr9 5248976 5249273 -137022171 + Charlie1 DNA MER1_type 2420 2730 -31 1035 154 135 5 chr9 5249379 5249587 -137021857 + MER46A DNA MER2_type 2 236 0 274 257 0 0 chr9 5250029 5250103 -137021341 + L1ME4a LINE L1 5978 6051 -70 33 25 0 0 chr9 5250126 5250166 -137021278 + AT_rich Low_complexity Low_complexity 1 40 0 1916 159 28 0 chr9 5250315 5250604 -137020840 - AluJo SINE Alu -15 297 1 636 244 73 6 chr9 5250822 5250986 -137020458 - MIR SINE MIR -3 259 85 2497 48 0 25 chr9 5252756 5253070 -137018374 + AluY SINE Alu 1 306 -5 359 269 107 13 chr9 5254312 5254461 -137016983 - MIR SINE MIR -44 218 56 23 0 0 0 chr9 5255334 5255357 -137016087 + AT_rich Low_complexity Low_complexity 1 23 0 197 200 67 50 chr9 5256002 5256062 -137015382 - MIR SINE MIR -200 62 2 28 29 0 0 chr9 5258517 5258552 -137012892 + AT_rich Low_complexity Low_complexity 1 35 0 2053 80 0 4 chr9 5258802 5259065 -137012379 + AluSc SINE Alu 1 262 -47 243 0 0 0 chr9 5259968 5259995 -137011449 + (TTTTTA)n Simple_repeat Simple_repeat 2 28 0 2484 26 0 40 chr9 5260372 5260675 -137010769 - AluY SINE Alu -20 291 1 1657 178 39 0 chr9 5260797 5261083 -137010361 + AluJo SINE Alu 5 301 -11 264 314 0 0 chr9 5263496 5263566 -137007878 - MIR SINE MIR -13 249 180 441 296 0 0 chr9 5264045 5264352 -137007092 + (CA)n Simple_repeat Simple_repeat 1 307 0 2249 111 7 0 chr9 5265093 5265400 -137006044 + AluSx SINE Alu 1 309 -3 1760 174 7 20 chr9 5265548 5265853 -137005591 - AluJb SINE Alu -11 301 1 720 229 171 26 chr9 5265955 5266354 -137005090 + MLT1K LTR MaLR 23 551 -37 181 231 96 0 chr9 5266444 5266496 -137004948 + L2 LINE L2 3171 3227 -45 506 296 46 15 chr9 5266508 5266704 -137004740 - MIR SINE MIR 0 262 61 1619 177 23 23 chr9 5266805 5267104 -137004340 + AluJo SINE Alu 1 299 -13 597 233 219 5 chr9 5267166 5267381 -137004063 - MIR SINE MIR 0 262 2 1697 173 127 0 chr9 5267717 5268040 -137003404 + MER47A DNA MER2_type 3 366 0 296 243 19 39 chr9 5268386 5268489 -137002955 + MLT1K LTR MaLR 461 561 -27 237 229 43 29 chr9 5269025 5269095 -137002349 + L2 LINE L2 3200 3270 -2 201 179 26 0 chr9 5269470 5269509 -137001935 + GA-rich Low_complexity Low_complexity 2 41 0 676 220 59 14 chr9 5269628 5269891 -137001553 + MLT2B1 LTR ERVL 1 274 -140 1977 115 20 7 chr9 5269940 5270235 -137001209 + AluSx SINE Alu 1 299 -13 1938 137 3 20 chr9 5270558 5270858 -137000586 + AluJo SINE Alu 1 295 -17 2032 143 0 7 chr9 5271278 5271578 -136999866 + AluSx SINE Alu 2 299 -13 2257 108 3 0 chr9 5271619 5271915 -136999529 - AluSx SINE Alu -15 297 1 261 231 87 29 chr9 5271925 5272029 -136999415 + L2 LINE L2 3113 3222 -91 219 294 71 24 chr9 5272451 5272536 -136998908 - MIR3 SINE MIR -30 178 90 1993 117 3 47 chr9 5272931 5273248 -136998196 + AluSx SINE Alu 1 303 -9 343 229 42 35 chr9 5273276 5273420 -136998024 + L1ME4a LINE L1 5921 6065 -56 360 313 60 76 chr9 5273761 5274128 -136997316 - L1ME4a LINE L1 -206 5915 5555 406 232 89 0 chr9 5274603 5274715 -136996729 + L1MB8 LINE L1 4080 4201 -1945 1567 156 0 0 chr9 5274729 5274954 -136996490 + AluJb SINE Alu 77 301 -11 1309 229 23 30 chr9 5274956 5275178 -136996266 + L1MB8 LINE L1 4808 5027 -1119 2262 92 17 7 chr9 5275178 5275473 -136995971 - AluSg SINE Alu -12 298 1 1309 229 23 30 chr9 5275473 5275643 -136995801 + L1MB8 LINE L1 5027 5197 -949 966 65 16 8 chr9 5275643 5275767 -136995677 + AluSq/x SINE Alu 1 125 -188 976 166 79 6 chr9 5275780 5276065 -136995379 + L1MB8 LINE L1 5188 5484 -694 14947 113 22 5 chr9 5276069 5278421 -136993023 - Tigger1 DNA MER2_type 0 2418 26 623 196 16 0 chr9 5278432 5278446 -136992998 + L1MB8 LINE L1 5478 5490 -694 2124 122 3 3 chr9 5278446 5278749 -136992695 + AluSx SINE Alu 1 303 -9 623 196 16 0 chr9 5278749 5278871 -136992573 + L1MB8 LINE L1 5490 5616 -568 726 171 0 0 chr9 5278872 5278989 -136992455 + FLAM_C SINE Alu 2 118 -15 344 300 0 0 chr9 5279002 5279092 -136992352 - L1MC4 LINE L1 -1339 6703 6614 405 177 0 0 chr9 5279094 5279173 -136992271 + (TA)n Simple_repeat Simple_repeat 1 79 0 2170 119 3 0 chr9 5279173 5279467 -136991977 - AluSq SINE Alu -18 295 1 841 178 34 0 chr9 5279482 5279628 -136991816 + FRAM SINE Alu 1 145 -31 3114 149 16 17 chr9 5279648 5279710 -136991734 + L1MB7 LINE L1 5609 5670 -514 1552 183 27 23 chr9 5279710 5280011 -136991433 + AluJo SINE Alu 1 302 -10 3114 149 16 17 chr9 5280011 5280525 -136990919 + L1MB7 LINE L1 5670 6184 0 21 36 0 0 chr9 5280597 5280625 -136990819 + AT_rich Low_complexity Low_complexity 1 28 0 1009 158 0 0 chr9 5280633 5280785 -136990659 + AluJb SINE Alu 156 307 -5 2607 100 10 5 chr9 5281275 5281666 -136989778 - L1PA13 LINE L1 -5 6158 5766 2042 172 98 5 chr9 5281929 5282097 -136989347 + Tigger2a DNA MER2_type 2 153 -2555 1805 174 10 10 chr9 5282097 5282407 -136989037 - AluJo SINE Alu -2 310 1 2042 172 98 5 chr9 5282407 5282634 -136988810 + Tigger2a DNA MER2_type 153 434 0 1588 146 8 16 chr9 5283053 5283300 -136988144 - AluJo SINE Alu -62 250 6 200 314 97 8 chr9 5283708 5283832 -136987612 + L2 LINE L2 1699 1833 -1481 1567 199 47 24 chr9 5284163 5284544 -136986900 + MLT1B LTR MaLR 1 390 0 198 208 0 0 chr9 5284667 5284715 -136986729 + (TGGA)n Simple_repeat Simple_repeat 1 48 0 1627 166 11 30 chr9 5284896 5285257 -136986187 + L1MB8 LINE L1 5716 6069 -109 25 31 0 0 chr9 5285252 5285284 -136986160 + AT_rich Low_complexity Low_complexity 1 32 0 * 633 168 0 18 chr9 5285284 5285397 -136986047 + AluJb SINE Alu 1 111 -201 495 123 0 0 chr9 5285397 5285556 -136985888 + (TA)n Simple_repeat Simple_repeat 1 159 0 324 250 3 31 chr9 5285549 5285676 -136985768 - L1MC4 LINE L1 -1337 6705 6614 * 1883 136 45 14 chr9 5285677 5285963 -136985481 - AluSx SINE Alu -17 295 1 45 34 0 0 chr9 5285963 5286022 -136985422 + AT_rich Low_complexity Low_complexity 1 59 0 2339 106 0 0 chr9 5286028 5286330 -136985114 + AluSx SINE Alu 1 302 -10 706 138 0 0 chr9 5286332 5286448 -136984996 + L1MB8 LINE L1 6063 6178 0 235 293 10 61 chr9 5286757 5286856 -136984588 - MIR3 SINE MIR -7 201 108 1817 149 24 7 chr9 5286884 5287172 -136984272 - AluJo SINE Alu -19 293 1 200 260 102 79 chr9 5287571 5287668 -136983776 + MIR3 SINE MIR 44 146 -62 1628 131 26 22 chr9 5287668 5287936 -136983508 + AluSx SINE Alu 36 304 -8 200 260 102 79 chr9 5287936 5287965 -136983479 + MIR3 SINE MIR 146 173 -35 477 269 91 62 chr9 5288201 5288368 -136983076 + L1ME4a LINE L1 5625 5786 -335 2267 106 0 0 chr9 5288368 5288660 -136982784 - AluSq SINE Alu -21 292 1 477 269 91 62 chr9 5288660 5288956 -136982488 + L1ME4a LINE L1 5786 6101 -20 1932 148 3 19 chr9 5288956 5289267 -136982177 - AluSx SINE Alu -6 306 1 1669 159 32 11 chr9 5289391 5289674 -136981770 - AluSq SINE Alu -10 303 15 1653 88 0 0 chr9 5289844 5290060 -136981384 + AluY SINE Alu 1 216 -95 264 100 0 0 chr9 5290253 5290293 -136981151 + (A)n Simple_repeat Simple_repeat 1 40 0 226 188 47 16 chr9 5290407 5290471 -136980973 - L1MB7 LINE L1 0 6184 6119 215 61 30 0 chr9 5290690 5290723 -136980721 + (GAAA)n Simple_repeat Simple_repeat 3 36 0 2205 91 39 0 chr9 5292804 5293089 -136978355 - AluSp SINE Alu -17 296 1 2043 134 3 17 chr9 5293092 5293390 -136978054 - AluSq SINE Alu -18 295 2 247 232 0 0 chr9 5294052 5294108 -136977336 + L2 LINE L2 3254 3309 -4 1908 134 31 0 chr9 5294131 5294422 -136977022 - AluSx SINE Alu -12 300 1 1916 209 88 2 chr9 5294505 5294935 -136976509 + MLT1C LTR MaLR 1 467 0 1902 135 3 64 chr9 5295117 5295428 -136976016 + AluJb SINE Alu 1 292 -20 2023 124 0 31 chr9 5295438 5295759 -136975685 + AluSx SINE Alu 1 312 0 1143 168 0 0 chr9 5295759 5295932 -136975512 + AluSg/x SINE Alu 130 302 -8 463 274 73 22 chr9 5295937 5296116 -136975328 - L2 LINE L2 -337 2977 2790 1295 242 50 29 chr9 5296116 5296622 -136974822 + MLT1G LTR MaLR 1 518 -49 411 226 110 108 chr9 5296689 5297429 -136974015 - L1MD3 LINE L1 -1 7994 7141 1503 128 83 55 chr9 5297429 5297718 -136973726 + AluJo SINE Alu 1 297 -15 411 226 110 108 chr9 5297718 5298327 -136973117 - L1MD3 LINE L1 -854 7141 6535 216 0 0 0 chr9 5298379 5298403 -136973041 + (TTTTA)n Simple_repeat Simple_repeat 2 25 0 1599 152 3 69 chr9 5298406 5298696 -136972748 - AluJo SINE Alu -30 282 12 1642 252 105 16 chr9 5299189 5299753 -136971691 - L2 LINE L2 -773 2541 1928 2292 119 0 3 chr9 5299769 5300080 -136971364 + AluSg SINE Alu 1 310 0 198 204 0 0 chr9 5300876 5300920 -136970524 - L2 LINE L2 -773 2541 2498 710 251 182 19 chr9 5300920 5301227 -136970217 - MLT1A1 LTR MaLR -8 357 1 1122 180 80 51 chr9 5301414 5301783 -136969661 - MSTC LTR MaLR 0 428 15 338 241 13 13 chr9 5302137 5302216 -136969228 + MER63 DNA MER1_type 688 766 -296 395 221 0 0 chr9 5302237 5302305 -136969139 + MER63 DNA MER1_type 994 1061 0 977 229 25 55 chr9 5302307 5302634 -136968810 + L1MC4a LINE L1 5256 5572 -2236 1126 183 116 12 chr9 5302634 5302885 -136968559 - LTR23 LTR ERV1 0 437 161 1910 159 0 7 chr9 5302980 5303358 -136968086 + AluSx SINE Alu 1 376 0 2285 117 0 0 chr9 5303433 5303742 -136967702 - AluSx SINE Alu -3 309 1 480 148 23 0 chr9 5303742 5303830 -136967614 - LTR23 LTR ERV1 -347 90 1 250 250 0 16 chr9 5303830 5303894 -136967550 + L1MC4a LINE L1 5569 5631 -2177 490 302 113 8 chr9 5303898 5304146 -136967298 + L1MC4a LINE L1 5670 5943 -1865 1431 161 0 0 chr9 5304185 5304403 -136967041 + AluJb SINE Alu 1 218 -94 2208 104 23 7 chr9 5304451 5304758 -136966686 + AluSp SINE Alu 1 312 -1 410 206 20 0 chr9 5304859 5304961 -136966483 + CT-rich Low_complexity Low_complexity 1 104 0 2129 145 0 3 chr9 5304983 5305294 -136966150 - AluJo SINE Alu -2 310 1 1640 179 16 52 chr9 5305745 5306034 -136965410 - MER4D LTR ERV1 0 903 628 1898 174 26 0 chr9 5306034 5306338 -136965106 + AluJo SINE Alu 1 312 0 1640 179 16 52 chr9 5306338 5306411 -136965033 - MER4D LTR ERV1 -275 628 554 1781 147 35 7 chr9 5306431 5306717 -136964727 - MER49 LTR ERV1 -629 294 1 380 324 7 7 chr9 5306803 5306945 -136964499 + MIR SINE MIR 61 202 -60 1915 183 86 49 chr9 5306945 5307431 -136964013 - LTR54 LTR ERV1 0 510 7 228 333 68 8 chr9 5307702 5307819 -136963625 + MIR SINE MIR 48 146 -62 1322 189 58 0 chr9 5308330 5308616 -136962828 - AluJo SINE Alu 0 310 10 1118 239 79 31 chr9 5308617 5309035 -136962409 + LTR56 LTR ERV1 8 445 0 236 29 0 29 chr9 5309072 5309106 -136962338 + (GAAAA)n Simple_repeat Simple_repeat 4 36 0 2429 66 0 3 chr9 5309128 5309417 -136962027 + AluY SINE Alu 1 288 -23 25 0 0 0 chr9 5309671 5309696 -136961748 + AT_rich Low_complexity Low_complexity 1 25 0 478 240 145 12 chr9 5309889 5310131 -136961313 + L1M4 LINE L1 5124 5397 -749 * 2859 200 136 10 chr9 5310128 5310748 -136960696 + L1MA5 LINE L1 11 708 -6460 3717 202 39 6 chr9 5310778 5311677 -136959767 + L1MA5 LINE L1 2211 3139 -4029 1382 197 66 4 chr9 5311677 5311951 -136959493 + AluJo SINE Alu 1 291 -21 2717 161 49 60 chr9 5311958 5312089 -136959355 + L1MA5 LINE L1 4949 5080 -2087 6829 46 0 4 chr9 5312089 5313056 -136958388 - L1PA6 LINE L1 -6 6148 5143 2717 161 49 60 chr9 5313056 5313700 -136957744 + L1MA5 LINE L1 5080 5770 -1397 618 195 0 18 chr9 5313703 5313816 -136957628 + AluJo SINE Alu 24 134 -178 1890 143 40 13 chr9 5313822 5314936 -136956508 + L1MA5 LINE L1 5931 7141 -180 1318 119 40 44 chr9 5314936 5315162 -136956282 - AluJo SINE Alu -3 309 85 994 94 61 39 chr9 5315162 5315342 -136956102 + L1MA5 LINE L1 7136 7319 -2 1929 245 129 21 chr9 5315345 5316058 -136955386 + L1ME3A LINE L1 5377 6166 -4 2192 122 0 34 chr9 5316115 5316435 -136955009 + AluSx SINE Alu 1 309 -3 2267 99 3 3 chr9 5316635 5316937 -136954507 + AluSc SINE Alu 1 302 -7 439 260 95 22 chr9 5316942 5317203 -136954241 + L1MC4a LINE L1 5613 5819 -302 1978 140 0 10 chr9 5317643 5317943 -136953501 + AluJb SINE Alu 10 306 -6 5640 231 72 36 chr9 5317943 5318425 -136953019 + L1MD1 LINE L1 2376 2839 -3307 2320 103 3 0 chr9 5318425 5318725 -136952719 + AluSp SINE Alu 2 302 -11 5640 231 72 36 chr9 5318725 5319603 -136951841 + L1MD1 LINE L1 2839 3684 -2462 426 39 0 0 chr9 5319603 5319655 -136951789 + (TG)n Simple_repeat Simple_repeat 2 53 0 5640 231 72 36 chr9 5319655 5320165 -136951279 + L1MD1 LINE L1 3684 4329 -1817 471 48 0 0 chr9 5320165 5320227 -136951217 + (CA)n Simple_repeat Simple_repeat 2 63 0 5640 231 72 36 chr9 5320227 5320396 -136951048 + L1MD1 LINE L1 4329 4490 -1656 728 181 52 26 chr9 5320847 5321002 -136950442 - FRAM SINE Alu -9 167 9 298 120 0 40 chr9 5321046 5321096 -136950348 - AluJb SINE Alu -170 132 85 1467 173 3 90 chr9 5323103 5323435 -136948009 + AluJo SINE Alu 1 305 0 2626 187 129 44 chr9 5323733 5324026 -136947418 + L1MD1 LINE L1 4477 4744 -1498 1934 116 13 51 chr9 5324026 5324337 -136947107 + AluSx SINE Alu 1 299 -13 2626 187 129 44 chr9 5324337 5324771 -136946673 + L1MD1 LINE L1 4744 5140 -1102 1578 202 0 26 chr9 5324771 5325078 -136946366 + AluJo SINE Alu 1 299 -13 2626 187 129 44 chr9 5325078 5325298 -136946146 + L1MD1 LINE L1 5140 5340 -902 2233 110 3 3 chr9 5325298 5325598 -136945846 + AluSx SINE Alu 1 300 -12 2626 187 129 44 chr9 5325598 5325736 -136945708 + L1MD1 LINE L1 5340 5465 -777 2219 117 10 0 chr9 5325736 5326045 -136945399 + AluSx SINE Alu 1 312 0 2626 187 129 44 chr9 5326045 5326247 -136945197 + L1MD1 LINE L1 5465 5892 -350 38 0 0 0 chr9 5326528 5326566 -136944878 + AT_rich Low_complexity Low_complexity 1 38 0 2116 141 11 22 chr9 5326573 5326942 -136944502 + L1MD1 LINE L1 5878 6242 0 665 233 0 0 chr9 5326977 5327110 -136944334 + FLAM_C SINE Alu 1 133 0 484 179 14 28 chr9 5327110 5327255 -136944189 + GA-rich Low_complexity Low_complexity 3 145 0 189 0 0 0 chr9 5327255 5327276 -136944168 + (GAAAA)n Simple_repeat Simple_repeat 1 21 0 183 80 0 0 chr9 5327353 5327378 -136944066 + (A)n Simple_repeat Simple_repeat 1 25 0 196 250 269 19 chr9 5327791 5327899 -136943545 - MIR3 SINE MIR -60 148 14 1209 174 38 5 chr9 5328585 5328797 -136942647 - MER20 DNA MER1_type 0 219 1 309 283 83 17 chr9 5328838 5328958 -136942486 + L3 LINE CR1 1218 1345 -232 745 206 63 71 chr9 5328959 5329212 -136942232 - MIR SINE MIR 0 262 12 3363 136 28 16 chr9 5329299 5329551 -136941893 + L1PB4 LINE L1 5579 5826 -330 1588 197 28 14 chr9 5329551 5329840 -136941604 + AluJo SINE Alu 1 293 -19 3363 136 28 16 chr9 5329840 5330155 -136941289 + L1PB4 LINE L1 5826 6153 -3 180 305 67 9 chr9 5330364 5330469 -136940975 + L2 LINE L2 3200 3310 -3 217 274 14 14 chr9 5330552 5330625 -136940819 + L3 LINE CR1 1495 1567 -10 234 195 37 98 chr9 5330770 5330852 -136940592 - L1MC4 LINE L1 -1339 6703 6627 2136 102 3 20 chr9 5330868 5331172 -136940272 + AluSx SINE Alu 1 299 -13 21 36 0 0 chr9 5332983 5333011 -136938433 + GC_rich Low_complexity Low_complexity 1 28 0 1271 203 68 0 chr9 5334432 5334669 -136936775 - AluJb SINE Alu -59 253 1 2209 150 0 0 chr9 5334669 5335030 -136936414 - L1 LINE L1 -1142 5004 4644 16205 129 29 77 chr9 5335035 5336398 -136935046 - L1MA2 LINE L1 0 7723 6297 1304 141 0 0 chr9 5336398 5336583 -136934861 - AluSg/x SINE Alu -3 307 123 16205 129 29 77 chr9 5336583 5337191 -136934253 - L1MA2 LINE L1 -1426 6297 5662 1599 144 48 41 chr9 5337191 5337482 -136933962 - AluJb SINE Alu -9 303 11 16205 129 29 77 chr9 5337482 5337638 -136933806 - L1MA2 LINE L1 -2061 5662 5500 1696 158 92 0 chr9 5337638 5337910 -136933534 + AluSx SINE Alu 1 297 -15 16205 129 29 77 chr9 5337910 5339512 -136931932 - L1MA2 LINE L1 -2223 5500 3824 2777 90 0 37 chr9 5339512 5339584 -136931860 - THE1B LTR MaLR 0 364 291 2218 119 0 0 chr9 5339584 5339887 -136931557 + AluSg SINE Alu 1 303 -7 2777 90 0 37 chr9 5339887 5340192 -136931252 - THE1B LTR MaLR -73 291 1 16205 129 29 77 chr9 5340192 5340574 -136930870 - L1MA2 LINE L1 -3899 3824 3426 2947 73 0 5 chr9 5340574 5340942 -136930502 - L1PA8 LINE L1 0 6172 5807 16205 129 29 77 chr9 5340942 5342238 -136929206 - L1MA2 LINE L1 -4297 3426 2070 2262 114 0 3 chr9 5342238 5342545 -136928899 + AluSx SINE Alu 1 306 -6 16205 129 29 77 chr9 5342545 5342923 -136928521 - L1MA2 LINE L1 -5653 2070 1676 2290 105 14 0 chr9 5342923 5343218 -136928226 + AluSx SINE Alu 1 299 -13 16205 129 29 77 chr9 5343218 5344070 -136927374 - L1MA2 LINE L1 -6047 1676 1081 282 179 0 0 chr9 5344837 5344893 -136926551 + GA-rich Low_complexity Low_complexity 2 57 0 5690 178 47 6 chr9 5344909 5345939 -136925505 - L1MA2 LINE L1 -6489 1076 5 1823 131 3 91 chr9 5345956 5346285 -136925159 + AluSx SINE Alu 1 300 -12 2562 184 89 7 chr9 5346285 5346860 -136924584 + L1MB7 LINE L1 5487 6108 -76 1899 162 0 20 chr9 5346972 5347275 -136924169 - AluSq SINE Alu -16 297 1 1349 138 0 46 chr9 5347629 5347846 -136923598 - AluJb SINE Alu -105 207 1 320 146 0 0 chr9 5347852 5347907 -136923537 - MLT2B2 LTR ERVL -460 55 1 325 347 0 0 chr9 5347911 5348009 -136923435 - L1MC/D LINE L1 -2246 5562 5465 2117 131 0 13 chr9 5348115 5348428 -136923016 - AluSx SINE Alu -3 309 1 1237 124 27 5 chr9 5348523 5348708 -136922736 + AluSq SINE Alu 1 189 -124 262 185 0 37 chr9 5348711 5348819 -136922625 + GA-rich Low_complexity Low_complexity 2 105 0 1575 174 71 14 chr9 5349047 5349329 -136922115 - AluJo SINE Alu -4 298 1 1756 201 9 25 chr9 5349501 5349803 -136921641 - MLT2B1 LTR ERVL -111 409 61 1788 158 0 27 chr9 5349803 5350095 -136921349 - AluJb SINE Alu -28 284 1 1756 201 9 25 chr9 5350095 5350156 -136921288 - MLT2B1 LTR ERVL -459 61 1 528 296 0 0 chr9 5350167 5350302 -136921142 - L1MC/D LINE L1 -2253 5555 5421 1947 23 0 0 chr9 5350878 5351097 -136920347 - L1PA4 LINE L1 -160 5995 5777 1318 28 0 0 chr9 5351097 5351242 -136920202 + L1PA4 LINE L1 6003 6147 -8 2243 105 6 6 chr9 5351289 5351602 -136919842 - AluSq SINE Alu 0 313 1 41 36 0 0 chr9 5351608 5351663 -136919781 + AT_rich Low_complexity Low_complexity 1 55 0 1255 208 112 16 chr9 5351687 5351987 -136919457 + MLT1I LTR MaLR 92 407 -2 400 315 189 21 chr9 5352177 5352552 -136918892 - L3 LINE CR1 -1 1576 1139 2318 80 3 7 chr9 5352615 5352914 -136918530 + AluY SINE Alu 1 298 -13 247 173 49 25 chr9 5353434 5353515 -136917929 - L1ME4a LINE L1 -1 6120 6038 971 225 0 0 chr9 5353616 5353785 -136917659 + FAM SINE Alu 1 169 -6 230 200 67 53 chr9 5354018 5354093 -136917351 + L2 LINE L2 2316 2391 -923 1771 172 10 10 chr9 5354193 5354495 -136916949 + AluJo SINE Alu 1 302 -10 946 146 0 38 chr9 5354520 5354678 -136916766 - AluSg/x SINE Alu -20 292 141 2195 75 0 52 chr9 5354681 5354987 -136916457 - AluY SINE Alu -21 290 1 546 221 30 70 chr9 5355246 5355445 -136915999 - L2 LINE L2 -3 3310 3120 705 344 6 34 chr9 5355490 5355816 -136915628 - L2 LINE L2 -622 2692 2376 1660 98 0 0 chr9 5355841 5356046 -136915398 + AluSx SINE Alu 5 209 -103 720 112 0 0 chr9 5356085 5356183 -136915261 + AluSx SINE Alu 209 306 -6 312 109 43 0 chr9 5357653 5357699 -136913745 - MLT2D LTR ERVL 0 414 367 242 213 40 13 chr9 5357699 5357774 -136913670 + (TATG)n Simple_repeat Simple_repeat 1 77 0 1647 228 24 73 chr9 5357774 5358278 -136913166 - MLT2B1 LTR ERVL -41 479 1 429 278 23 8 chr9 5358439 5358572 -136912872 - L2 LINE L2 -955 2359 2225 759 192 8 0 chr9 5358599 5358719 -136912725 + AluJb SINE Alu 2 122 -190 28 0 0 0 chr9 5358790 5358818 -136912626 + AT_rich Low_complexity Low_complexity 1 28 0 266 335 73 35 chr9 5358818 5359078 -136912366 - L2 LINE L2 -1131 2183 1914 207 0 0 0 chr9 5359081 5359104 -136912340 + (TTTTA)n Simple_repeat Simple_repeat 3 25 0 392 208 0 0 chr9 5359358 5359430 -136912014 - MER94 DNA DNA -61 73 2 2224 237 94 5 chr9 5359710 5360318 -136911126 - L1MC4 LINE L1 -140 7902 7241 1180 183 76 55 chr9 5360332 5360622 -136910822 - L1MC4 LINE L1 -970 7072 6777 2347 91 0 3 chr9 5360625 5360923 -136910521 + AluSx SINE Alu 1 297 -15 2439 82 3 0 chr9 5360949 5361254 -136910190 + AluSc SINE Alu 1 306 -3 246 205 0 0 chr9 5361276 5361315 -136910129 + AluJ/monomer SINE Alu 1 39 -262 22 35 0 0 chr9 5362489 5362518 -136908926 + AT_rich Low_complexity Low_complexity 1 29 0 442 182 65 71 chr9 5362521 5362675 -136908769 - L1ME4a LINE L1 -4 6117 5965 1569 149 50 114 chr9 5362763 5362927 -136908517 + MLT1B LTR MaLR 1 174 -216 2154 130 0 0 chr9 5362927 5363228 -136908216 + AluSx SINE Alu 12 312 0 1569 149 50 114 chr9 5363228 5363465 -136907979 + MLT1B LTR MaLR 174 376 -14 1033 289 46 28 chr9 5363571 5364033 -136907411 - L1ME4a LINE L1 -188 5933 5468 2255 78 10 10 chr9 5364913 5365206 -136906238 + AluSq SINE Alu 1 293 -20 291 123 70 26 chr9 5365206 5365320 -136906124 + (TA)n Simple_repeat Simple_repeat 1 119 0 1937 103 31 78 chr9 5365483 5365675 -136905769 - AluSx SINE Alu -8 304 131 2179 60 43 0 chr9 5365675 5365984 -136905460 - AluY SINE Alu 0 311 1 1937 103 31 78 chr9 5365984 5366110 -136905334 - AluSx SINE Alu -181 131 1 409 274 51 0 chr9 5366305 5366422 -136905022 - MIR SINE MIR -27 235 113 1868 121 10 38 chr9 5367406 5367721 -136903723 - AluSx SINE Alu 0 307 1 711 286 122 61 chr9 5367741 5368120 -136903324 - L1ME4a LINE L1 -1792 4354 4000 2245 109 0 0 chr9 5368120 5368414 -136903030 + AluSx SINE Alu 1 294 -18 711 286 122 61 chr9 5368414 5368922 -136902522 - L1ME4a LINE L1 -2146 4000 3408 430 311 34 48 chr9 5369062 5369408 -136902036 + MLT1K LTR MaLR 225 586 -2 2214 100 3 3 chr9 5369775 5370074 -136901370 - AluSx SINE Alu -13 299 1 332 296 32 38 chr9 5370132 5370318 -136901126 - L1ME4a LINE L1 -3093 3053 2869 685 154 52 0 chr9 5370357 5370493 -136900951 - L1MC3 LINE L1 -1 7784 7642 1104 153 62 0 chr9 5370509 5370685 -136900759 - L1MC3 LINE L1 -427 7358 7172 1604 188 19 16 chr9 5370688 5370997 -136900447 - AluJo SINE Alu -2 310 1 354 231 9 37 chr9 5370997 5371105 -136900339 - MLT1F1 LTR MaLR -443 124 20 1389 194 70 39 chr9 5371105 5371461 -136899983 - L1MC3 LINE L1 -709 7076 6710 21 36 0 0 chr9 5371498 5371526 -136899918 + AT_rich Low_complexity Low_complexity 1 28 0 25 31 0 0 chr9 5371545 5371577 -136899867 + AT_rich Low_complexity Low_complexity 1 32 0 44263 41 6 0 chr9 5371577 5377694 -136893750 - L1PA4 LINE L1 -3 6152 2 2103 117 7 7 chr9 5377696 5377994 -136893450 - AluSq SINE Alu -15 298 1 351 246 184 0 chr9 5378005 5378119 -136893325 - MLT1H LTR MaLR -65 484 350 2946 119 113 61 chr9 5378384 5378878 -136892566 - MLT2B1 LTR ERVL 0 520 1 255 313 10 20 chr9 5379662 5379761 -136891683 - MLT1-int LTR MaLR -1269 102 5 964 175 0 75 chr9 5381100 5381300 -136890144 + MER20 DNA MER1_type 1 185 -34 852 152 0 0 chr9 5381382 5381514 -136889930 + FRAM SINE Alu 33 164 -12 791 200 23 46 chr9 5381547 5381722 -136889722 - MER5B DNA MER1_type -1 177 7 297 178 208 20 chr9 5381728 5381829 -136889615 - MIR3 SINE MIR -48 160 41 26 82 0 0 chr9 5381931 5381992 -136889452 + AT_rich Low_complexity Low_complexity 1 61 0 3215 199 27 37 chr9 5382014 5382767 -136888677 + L1ME1 LINE L1 5408 6152 -14 231 295 147 0 chr9 5382774 5382903 -136888541 - HAL1b LINE L1 -6 1342 1195 1089 279 58 49 chr9 5382909 5383478 -136887966 - HAL1b LINE L1 -692 656 83 1358 188 19 16 chr9 5384360 5384616 -136886828 - MER58B DNA MER1_type -5 336 80 592 222 0 0 chr9 5384619 5384718 -136886726 + FLAM_A SINE Alu 1 99 -43 371 277 0 0 chr9 5384733 5384816 -136886628 - MER58B DNA MER1_type -258 83 1 1554 204 59 4 chr9 5385059 5385236 -136886208 - AluJo SINE Alu 0 308 108 189 0 0 0 chr9 5385236 5385257 -136886187 + (TTG)n Simple_repeat Simple_repeat 1 21 0 1554 204 59 4 chr9 5385257 5385372 -136886072 - AluJo SINE Alu -200 108 1 271 258 152 3 chr9 5385544 5385636 -136885808 + MER2 DNA MER2_type 2 104 -135 1362 130 0 5 chr9 5385716 5385908 -136885536 + AluSx SINE Alu 7 197 -115 567 216 203 0 chr9 5387294 5387442 -136884002 + MER5A DNA MER1_type 9 186 -3 701 232 19 19 chr9 5387459 5387516 -136883928 - MER5B DNA MER1_type -5 173 117 2282 116 0 3 chr9 5387516 5387818 -136883626 + AluSg SINE Alu 1 301 -9 701 232 19 19 chr9 5387818 5387915 -136883529 - MER5B DNA MER1_type -60 118 19 2501 77 0 0 chr9 5388096 5388394 -136883050 - AluY SINE Alu -13 298 1 3283 184 11 17 chr9 5388410 5389072 -136882372 - L1MB4 LINE L1 -6 6174 5517 1698 192 0 3 chr9 5390065 5390362 -136881082 - AluJb SINE Alu -16 296 1 1668 169 17 40 chr9 5390367 5390669 -136880775 - AluJo SINE Alu -17 295 1 605 137 56 96 chr9 5390879 5390995 -136880449 - MER53 DNA DNA 0 189 83 2193 117 0 3 chr9 5390995 5391294 -136880150 + AluY SINE Alu 2 299 -12 605 137 56 96 chr9 5391294 5391374 -136880070 - MER53 DNA DNA -106 83 1 295 253 214 17 chr9 5391816 5391994 -136879450 - LTR33 LTR ERVL -297 224 12 487 284 45 13 chr9 5392002 5392157 -136879287 - MIR SINE MIR -19 243 84 23 0 0 0 chr9 5392220 5392243 -136879201 + AT_rich Low_complexity Low_complexity 1 23 0 310 218 46 35 chr9 5392570 5392657 -136878787 - L3 LINE CR1 -7 1570 1483 43 35 0 0 chr9 5393297 5393354 -136878090 + AT_rich Low_complexity Low_complexity 1 57 0 487 211 37 9 chr9 5394036 5394145 -136877299 - MER81 DNA DNA 0 114 3 198 103 0 0 chr9 5394462 5394491 -136876953 + (CA)n Simple_repeat Simple_repeat 2 30 0 301 350 6 0 chr9 5394854 5395017 -136876427 + L1M4 LINE L1 2880 3043 -3103 303 28 0 0 chr9 5395072 5395108 -136876336 + (CAAA)n Simple_repeat Simple_repeat 1 36 0 195 284 84 63 chr9 5395408 5395503 -136875941 - MIR SINE MIR -59 149 53 267 284 159 35 chr9 5395980 5396212 -136875232 - L3 LINE CR1 -19 1558 1298 697 223 0 0 chr9 5396813 5396934 -136874510 - FLAM_A SINE Alu -12 121 1 584 247 45 40 chr9 5396934 5397181 -136874263 + L1ME4a LINE L1 5588 5835 -286 300 215 50 91 chr9 5397760 5397881 -136873563 - MLT1H LTR MaLR 0 549 434 901 137 0 0 chr9 5398004 5398135 -136873309 + AluSg/x SINE Alu 178 308 -4 1923 140 0 47 chr9 5398598 5398919 -136872525 - AluSx SINE Alu -6 306 1 214 340 0 10 chr9 5401406 5401509 -136869935 + (CCA)n Simple_repeat Simple_repeat 1 102 0 2390 68 3 0 chr9 5401900 5402195 -136869249 - AluY SINE Alu 0 311 16 306 0 0 0 chr9 5402514 5402548 -136868896 + (TTTTG)n Simple_repeat Simple_repeat 1 34 0 1898 153 0 33 chr9 5402643 5402950 -136868494 - AluSx SINE Alu -15 297 1 1631 192 17 7 chr9 5403185 5403487 -136867957 - AluJb SINE Alu -7 305 1 524 240 6 55 chr9 5403490 5403673 -136867771 - L1ME2 LINE L1 -36 6128 5955 503 246 94 36 chr9 5403687 5403891 -136867553 - L1ME2 LINE L1 -633 5537 5289 792 206 12 0 chr9 5403891 5404051 -136867393 - FRAM SINE Alu -1 165 4 503 246 94 36 chr9 5404051 5404160 -136867284 - L1ME2 LINE L1 -881 5289 5188 397 154 22 33 chr9 5404166 5404257 -136867187 - Charlie1a DNA MER1_type -633 822 733 41880 39 3 0 chr9 5404263 5410395 -136861049 - L1PA4 LINE L1 -6 6149 8 462 194 31 0 chr9 5410402 5410500 -136860944 - Charlie1a DNA MER1_type -710 745 645 768 226 7 0 chr9 5410512 5410658 -136860786 + AluJb SINE Alu 148 294 -18 1321 189 61 10 chr9 5410688 5411000 -136860444 - Charlie1a DNA MER1_type -803 652 325 5081 153 19 38 chr9 5411001 5411740 -136859704 + L1MC2 LINE L1 5308 6023 -321 2340 78 0 10 chr9 5411740 5412046 -136859398 - AluY SINE Alu -8 303 1 5081 153 19 38 chr9 5412046 5412351 -136859093 + L1MC2 LINE L1 6023 6332 -12 1056 181 7 90 chr9 5412351 5412639 -136858805 - Charlie1a DNA MER1_type -1110 345 82 560 252 41 41 chr9 5412661 5413017 -136858427 - L1ME LINE L1 -4831 1249 892 2316 91 10 0 chr9 5413040 5413336 -136858108 + AluSx SINE Alu 1 299 -13 2892 9 0 0 chr9 5413354 5413670 -136857774 + AluYb8 SINE Alu 1 316 -2 799 147 55 10 chr9 5413815 5414007 -136857437 - L1MA7 LINE L1 -6 6285 6093 366 243 33 38 chr9 5414005 5414215 -136857229 - L1ME LINE L1 -5179 891 683 * 4867 180 25 26 chr9 5414252 5415206 -136856238 + L1 LINE L1 818 1770 -5398 1798 158 22 0 chr9 5415199 5415559 -136855885 + L1 LINE L1 5284 5651 -1516 * 680 122 65 0 chr9 5415564 5415687 -136855757 - L1MA4 LINE L1 -17 6283 6153 1327 275 43 37 chr9 5415693 5416184 -136855260 - L1M3b LINE L1 -5777 504 11 871 210 125 23 chr9 5416202 5416670 -136854774 - L1M4c LINE L1 -4137 2509 1914 674 144 0 0 chr9 5416691 5416795 -136854649 + AluSg/x SINE Alu 170 273 -39 789 157 31 6 chr9 5416842 5417001 -136854443 - L1MC/D LINE L1 -756 5577 5415 8869 155 91 86 chr9 5417006 5417074 -136854370 - L1MCa LINE L1 -3948 2478 2412 1877 183 0 16 chr9 5417074 5417391 -136854053 - AluJo SINE Alu 0 312 1 8869 155 91 86 chr9 5417391 5417865 -136853579 - L1MCa LINE L1 -4014 2412 1942 226 185 0 74 chr9 5417865 5417919 -136853525 - Alu SINE Alu -249 50 1 8869 155 91 86 chr9 5417919 5419816 -136851628 - L1MCa LINE L1 -4484 1942 56 3488 217 66 22 chr9 5419837 5421265 -136850179 - L1M4c LINE L1 -4726 1920 448 628 264 58 14 chr9 5421404 5421681 -136849763 - L1ME4a LINE L1 -296 5825 5537 442 306 153 6 chr9 5421785 5421942 -136849502 - MER5A DNA MER1_type -1 188 9 1153 122 0 43 chr9 5423155 5423343 -136848101 - AluSg/x SINE Alu -1 311 132 511 343 23 23 chr9 5424126 5424298 -136847146 + MER5B DNA MER1_type 3 174 -4 701 152 23 38 chr9 5424310 5424442 -136847002 + MER5B DNA MER1_type 1 130 -48 279 262 0 0 chr9 5424479 5424540 -136846904 + MER5B DNA MER1_type 118 178 0 599 207 200 0 chr9 5424613 5424763 -136846681 - MER5A DNA MER1_type 0 189 10 1777 139 89 4 chr9 5424921 5425202 -136846242 - AluSx SINE Alu -7 305 1 345 47 0 0 chr9 5425453 5425496 -136845948 + (TG)n Simple_repeat Simple_repeat 2 44 0 273 238 39 28 chr9 5425859 5426013 -136845431 - HAL1b LINE L1 -12 1336 1233 206 158 26 0 chr9 5426013 5426051 -136845393 + T-rich Low_complexity Low_complexity 2 40 0 2033 135 0 3 chr9 5426862 5427151 -136844293 + AluSx SINE Alu 6 293 -19 1453 250 69 40 chr9 5427371 5427919 -136843525 + L2 LINE L2 847 1410 -1904 686 286 57 74 chr9 5428135 5428307 -136843137 + LTR16B LTR ERVL 118 282 -182 3074 147 17 28 chr9 5428307 5428911 -136842533 - L1MB8 LINE L1 0 6178 5582 686 286 57 74 chr9 5428911 5429091 -136842353 + LTR16B LTR ERVL 282 464 0 2828 234 119 60 chr9 5429095 5430189 -136841255 + L2 LINE L2 1512 2669 -645 273 193 122 92 chr9 5430200 5430438 -136841006 + L1MC5 LINE L1 7639 7883 -78 377 268 151 34 chr9 5430446 5430466 -136840978 + HAL1b LINE L1 444 460 -888 3234 143 38 4 chr9 5430466 5430998 -136840446 + MER44D DNA MER2_type 1 605 0 377 268 151 34 chr9 5430998 5431044 -136840400 + HAL1b LINE L1 460 499 -849 2508 71 0 3 chr9 5431044 5431353 -136840091 + AluY SINE Alu 1 308 -3 377 268 151 34 chr9 5431353 5431576 -136839868 + HAL1b LINE L1 499 768 -580 2031 126 13 10 chr9 5431627 5431928 -136839516 - AluSx SINE Alu -9 303 2 324 288 65 52 chr9 5431962 5432115 -136839329 + MIR SINE MIR 18 172 -90 398 278 254 28 chr9 5432157 5432441 -136839003 - L2 LINE L2 -38 3275 2928 234 167 167 0 chr9 5432776 5432830 -136838614 - MIR SINE MIR -90 172 110 352 275 28 28 chr9 5433095 5433204 -136838240 - L2 LINE L2 0 3313 3205 1156 181 0 0 chr9 5433863 5434051 -136837393 - MER5A DNA MER1_type 0 189 2 555 312 73 12 chr9 5434308 5434555 -136836889 + MIR SINE MIR 1 262 0 397 327 31 6 chr9 5434550 5434709 -136836735 - MIR SINE MIR -26 236 74 * 225 356 27 0 chr9 5434939 5435012 -136836432 + L2 LINE L2 3195 3269 -3 351 295 89 85 chr9 5435067 5435677 -136835767 + L1ME4a LINE L1 5495 6121 0 2061 128 3 3 chr9 5437464 5437783 -136833661 - AluY SINE Alu 0 311 1 192 308 10 92 chr9 5438509 5438704 -136832740 - L3 LINE CR1 -708 869 691 433 260 122 25 chr9 5438736 5438932 -136832512 - MIR SINE MIR -42 220 6 216 320 48 29 chr9 5438933 5439036 -136832408 + MER5B DNA MER1_type 5 109 -69 253 307 122 42 chr9 5439075 5439264 -136832180 - L3 LINE CR1 -931 646 443 1429 245 49 56 chr9 5440378 5440892 -136830552 + L2 LINE L2 2804 3313 0 333 261 59 128 chr9 5441269 5441606 -136829838 + L1M2 LINE L1 662 975 -5874 319 289 99 99 chr9 5441506 5442234 -136829210 - L1M2 LINE L1 -5479 1370 776 * 1292 156 115 0 chr9 5443191 5443497 -136827947 - MER46B DNA MER2_type -8 228 1 248 289 256 39 chr9 5443915 5444000 -136827444 + MIR SINE MIR 9 74 -188 2358 103 0 0 chr9 5444000 5444310 -136827134 + AluSx SINE Alu 1 310 -2 248 289 256 39 chr9 5444310 5444404 -136827040 + MIR SINE MIR 74 227 -35 876 195 118 10 chr9 5444798 5445110 -136826334 + MER119 DNA MER1_type 137 583 0 300 320 80 8 chr9 5446751 5446876 -136824568 - MIR3 SINE MIR -9 199 66 185 328 40 34 chr9 5446893 5447070 -136824374 - L2 LINE L2 -889 2425 2248 538 297 36 5 chr9 5448288 5448480 -136822964 + L2 LINE L2 1471 1668 -1646 1451 207 134 88 chr9 5448491 5449036 -136822408 - MLT1G LTR MaLR -12 578 14 3242 138 71 3 chr9 5450295 5450861 -136820583 + MER6A DNA MER2_type 2 605 0 825 201 37 27 chr9 5450870 5451054 -136820390 - MER5A DNA MER1_type -3 175 1 911 239 4 39 chr9 5451062 5451292 -136820152 - MER58A DNA MER1_type 0 224 3 358 254 91 0 chr9 5451298 5451408 -136820036 + L2 LINE L2 1707 1826 -1488 289 303 175 20 chr9 5451459 5451710 -136819734 - L1MC/D LINE L1 -2105 5703 5414 1667 123 4 0 chr9 5452770 5453037 -136818407 + AluSq SINE Alu 58 325 0 25 31 0 0 chr9 5453059 5453091 -136818353 + AT_rich Low_complexity Low_complexity 1 32 0 21 57 0 0 chr9 5453299 5453334 -136818110 + AT_rich Low_complexity Low_complexity 1 35 0 1771 154 13 16 chr9 5453468 5453779 -136817665 - AluJb SINE Alu -2 310 1 2459 140 29 7 chr9 5453781 5454196 -136817248 - MSTA LTR MaLR -4 424 1 2421 87 0 0 chr9 5454802 5455101 -136816343 - AluSg SINE Alu -11 299 1 217 161 54 0 chr9 5455266 5455322 -136816122 + A-rich Low_complexity Low_complexity 2 60 0 2234 49 32 14 chr9 5455385 5455669 -136815775 - AluY SINE Alu -20 291 3 1213 79 57 6 chr9 5456050 5456227 -136815217 - MLT2A1 LTR ERVL -8 436 251 436 131 0 0 chr9 5456232 5456293 -136815151 - AluS SINE Alu -255 63 3 273 272 44 44 chr9 5456468 5456604 -136814840 - L1M4 LINE L1 -660 6220 6085 780 192 5 101 chr9 5457340 5457559 -136813885 - MER74B LTR ERVL -367 255 58 2738 222 52 15 chr9 5457560 5458376 -136813068 - L1M4 LINE L1 -1805 5043 4198 12915 161 20 45 chr9 5458482 5461113 -136810331 - L1M4 LINE L1 -4285 2564 1 1588 164 10 31 chr9 5461412 5461705 -136809739 - AluJb SINE Alu -25 287 1 26 0 0 0 chr9 5462063 5462089 -136809355 + AT_rich Low_complexity Low_complexity 1 26 0 1934 114 41 6 chr9 5462781 5463124 -136808320 - L1MA4A LINE L1 -138 6165 5811 1870 212 65 11 chr9 5463131 5463580 -136807864 - L1M2 LINE L1 -6366 483 11 315 169 0 0 chr9 5463585 5463644 -136807800 - L1M4 LINE L1 -5615 927 869 2396 86 0 0 chr9 5463747 5464037 -136807407 + AluY SINE Alu 1 290 -21 891 279 75 83 chr9 5464152 5464984 -136806460 - L1M4 LINE L1 -5716 826 2 214 172 0 35 chr9 5465226 5465284 -136806160 + CT-rich Low_complexity Low_complexity 2 57 0 1769 156 52 0 chr9 5465302 5465591 -136805853 - AluSx SINE Alu -8 304 1 369 263 95 22 chr9 5465832 5466106 -136805338 - L1M4 LINE L1 -2984 3864 3571 226 222 0 0 chr9 5466470 5466515 -136804929 + (TG)n Simple_repeat Simple_repeat 2 46 0 468 267 119 9 chr9 5466585 5466795 -136804649 - Charlie2 DNA MER1_type 0 2862 2630 14814 131 21 12 chr9 5466975 5469371 -136802073 - Tigger1 DNA MER2_type -2 2416 1 437 266 101 60 chr9 5470236 5470435 -136801009 - MIR SINE MIR -42 220 14 26 0 0 0 chr9 5470619 5470645 -136800799 + AT_rich Low_complexity Low_complexity 1 26 0 340 312 72 38 chr9 5470653 5470890 -136800554 + L1 LINE L1 4268 4512 -1634 40219 49 11 1 chr9 5471544 5477638 -136793806 + L1PA4 LINE L1 1 6151 -4 1046 237 112 5 chr9 5477945 5478312 -136793132 + L1MB7 LINE L1 3365 3770 -2376 1170 179 8 49 chr9 5478312 5478558 -136792886 - MER46A DNA MER2_type 0 236 1 5796 223 31 14 chr9 5478563 5478991 -136792453 + L1MB7 LINE L1 3775 4194 -1952 1924 169 33 0 chr9 5478991 5479323 -136792121 - MER2 DNA MER2_type -1 343 1 5796 223 31 14 chr9 5479323 5480493 -136790951 + L1MB7 LINE L1 4194 5400 -746 2834 19 0 0 chr9 5481893 5482209 -136789235 - AluYb8 SINE Alu -2 316 1 332 252 89 158 chr9 5482446 5482871 -136788573 - L1M4 LINE L1 -5907 942 547 2513 169 22 3 chr9 5483118 5483748 -136787696 + L1MB7 LINE L1 5386 6175 -9 4184 168 59 33 chr9 5485169 5486475 -136784969 - L1MB3 LINE L1 -3 6180 4845 1192 171 9 57 chr9 5487445 5487673 -136783771 - AluJo SINE Alu -95 217 1 2260 111 0 3 chr9 5487906 5488213 -136783231 - AluSg SINE Alu -4 306 1 2106 163 3 9 chr9 5489450 5489799 -136781645 - MER7A DNA MER2_type 0 346 2 1547 164 95 0 chr9 5490081 5490343 -136781101 - AluJo SINE Alu -25 287 1 1221 175 69 0 chr9 5490708 5490925 -136780519 - MER46A DNA MER2_type -3 233 2 328 369 6 18 chr9 5491155 5491323 -136780121 + MER5A DNA MER1_type 2 167 -22 * 504 271 7 21 chr9 5491187 5491331 -136780113 - MER5A DNA MER1_type -22 167 26 277 208 0 0 chr9 5491753 5491801 -136779643 - L2 LINE L2 0 3313 3266 4268 186 37 13 chr9 5492245 5493296 -136778148 - L1MB7 LINE L1 -1 6183 5110 455 305 140 5 chr9 5493308 5493508 -136777936 - L2 LINE L2 -1391 1923 1697 302 320 47 62 chr9 5496353 5496481 -136774963 + L2 LINE L2 3146 3271 -1 337 304 49 10 chr9 5496623 5496725 -136774719 - MIR SINE MIR -139 123 18 4711 160 44 21 chr9 5497147 5497349 -136774095 - L1MB2 LINE L1 0 6171 5975 2181 109 7 3 chr9 5497349 5497653 -136773791 - AluSg SINE Alu -5 305 1 4711 160 44 21 chr9 5497653 5497980 -136773464 - L1MB2 LINE L1 -196 5975 5657 1810 137 64 20 chr9 5497980 5498337 -136773107 - THE1C LTR MaLR -2 373 1 4711 160 44 21 chr9 5498337 5498840 -136772604 - L1MB2 LINE L1 -514 5657 5121 2688 253 56 18 chr9 5498846 5499705 -136771739 - L1ME3 LINE L1 -8 6154 5263 14737 127 31 16 chr9 5499738 5501850 -136769594 - Tigger1 DNA MER2_type -1 2417 265 1403 205 0 0 chr9 5501850 5502089 -136769355 - MER8 DNA MER2_type 0 239 1 14737 127 31 16 chr9 5502089 5502358 -136769086 - Tigger1 DNA MER2_type -2153 265 1 474 278 124 36 chr9 5502386 5502692 -136768752 - L1MC/D LINE L1 -2179 5629 5297 479 262 78 85 chr9 5502871 5503344 -136768100 - HAL1 LINE L1 -327 2180 1711 2131 101 0 0 chr9 5503648 5503924 -136767520 + AluSg SINE Alu 1 276 -34 1969 141 14 0 chr9 5504028 5504325 -136767119 + AluSx SINE Alu 9 309 -3 1109 174 47 0 chr9 5505238 5505428 -136766016 + MER3 DNA MER1_type 2 200 -9 223 409 64 0 chr9 5505806 5505916 -136765528 - L2 LINE L2 0 3272 3156 30 0 0 0 chr9 5506741 5506771 -136764673 + AT_rich Low_complexity Low_complexity 1 30 0 23 0 0 0 chr9 5507245 5507268 -136764176 + AT_rich Low_complexity Low_complexity 1 23 0 25 0 0 0 chr9 5507422 5507447 -136763997 + AT_rich Low_complexity Low_complexity 1 25 0 2282 92 0 25 chr9 5507644 5507961 -136763483 + AluSc SINE Alu 1 309 0 21 57 0 0 chr9 5508124 5508159 -136763285 + AT_rich Low_complexity Low_complexity 1 35 0 383 349 54 46 chr9 5508224 5508541 -136762903 - L2 LINE L2 -219 3053 2735 240 211 18 0 chr9 5510118 5510175 -136761269 + L1MEd LINE L1 115 172 -5947 709 217 119 7 chr9 5510182 5510325 -136761119 + MER8 DNA MER2_type 1 159 -80 26 30 0 0 chr9 5510326 5510359 -136761085 + AT_rich Low_complexity Low_complexity 1 33 0 238 173 39 0 chr9 5510359 5510411 -136761033 - Alu SINE Alu -5 297 244 502 156 0 0 chr9 5510476 5510553 -136760891 - Tigger2 DNA MER2_type -2641 77 1 1912 282 74 33 chr9 5510614 5511497 -136759947 + L1MEd LINE L1 238 1156 -4963 420 305 0 0 chr9 5511545 5511650 -136759794 - MIR SINE MIR -146 116 12 756 275 78 29 chr9 5511685 5511929 -136759515 - MIR SINE MIR 0 262 7 13971 129 39 30 chr9 5514055 5516451 -136754993 + Tigger1 DNA MER2_type 1 2417 -1 24 53 0 0 chr9 5516694 5516732 -136754712 + AT_rich Low_complexity Low_complexity 1 38 0 32 43 0 0 chr9 5516971 5517017 -136754427 + AT_rich Low_complexity Low_complexity 1 46 0 25 31 0 0 chr9 5517156 5517188 -136754256 + AT_rich Low_complexity Low_complexity 1 32 0 719 198 21 88 chr9 5519409 5519601 -136751843 + AluJb SINE Alu 114 292 -20 431 320 47 13 chr9 5519662 5519842 -136751602 + MIR3 SINE MIR 1 185 -23 2617 46 0 0 chr9 5520660 5520967 -136750477 - AluY SINE Alu -4 307 1 501 183 72 46 chr9 5521758 5521808 -136749636 + MER103 DNA DNA 10 57 -109 3435 194 58 53 chr9 5521808 5522772 -136748672 - LTR5 LTR ERVK 0 969 1 501 183 72 46 chr9 5522772 5522874 -136748570 + MER103 DNA DNA 57 166 0 320 171 260 14 chr9 5523672 5523818 -136747626 - L1ME4a LINE L1 -202 5919 5738 21 0 0 0 chr9 5524255 5524276 -136747168 + AT_rich Low_complexity Low_complexity 1 21 0 30 0 0 0 chr9 5524305 5524335 -136747109 + AT_rich Low_complexity Low_complexity 1 30 0 311 53 0 0 chr9 5525839 5525877 -136745567 - THE1-int LTR MaLR -125 1455 1418 26 0 0 0 chr9 5525891 5525917 -136745527 + GC_rich Low_complexity Low_complexity 1 26 0 2147 101 70 20 chr9 5526890 5527247 -136744197 - THE1C LTR MaLR 0 375 1 431 273 101 62 chr9 5527346 5527627 -136743817 + L1ME LINE L1 5407 5708 -413 22 0 0 0 chr9 5527709 5527731 -136743713 + AT_rich Low_complexity Low_complexity 1 22 0 408 323 57 6 chr9 5527846 5528004 -136743440 - MIR SINE MIR -79 183 18 1531 214 24 40 chr9 5528361 5528739 -136742705 - MLT1A2 LTR MaLR -2 372 1 2432 84 0 0 chr9 5529030 5529338 -136742106 + AluY SINE Alu 2 309 -2 22 0 0 0 chr9 5529371 5529393 -136742051 + AT_rich Low_complexity Low_complexity 1 22 0 2303 70 0 10 chr9 5538470 5538768 -136732676 - AluY SINE Alu -16 295 1 22 35 0 0 chr9 5539251 5539280 -136732164 + AT_rich Low_complexity Low_complexity 1 29 0 34787 90 17 12 chr9 5540688 5546808 -136724636 + L1PA6 LINE L1 12 6146 -8 252 0 0 0 chr9 5552964 5552992 -136718452 + (T)n Simple_repeat Simple_repeat 1 28 0 225 0 0 0 chr9 5553197 5553222 -136718222 + (A)n Simple_repeat Simple_repeat 1 25 0 225 0 0 0 chr9 5554705 5554730 -136716714 + (CAAA)n Simple_repeat Simple_repeat 2 26 0 6795 66 9 6 chr9 5554730 5555847 -136715597 + L1PA7 LINE L1 5030 6154 0 702 275 140 5 chr9 5555852 5556059 -136715385 - MIR SINE MIR -10 252 18 21 36 0 0 chr9 5556122 5556150 -136715294 + AT_rich Low_complexity Low_complexity 1 28 0 222 310 0 0 chr9 5556410 5556468 -136714976 - L2 LINE L2 -12 3301 3244 712 153 19 149 chr9 5556762 5557030 -136714414 + MLT1A1 LTR MaLR 116 348 -17 238 280 75 11 chr9 5557086 5557179 -136714265 - L2 LINE L2 -548 2766 2668 408 198 123 0 chr9 5557200 5557306 -136714138 + Charlie1 DNA MER1_type 52 170 -2591 * 1268 171 58 3 chr9 5557303 5557595 -136713849 + Charlie1 DNA MER1_type 2454 2761 0 2637 192 98 143 chr9 5557668 5557868 -136713576 - Charlie2a DNA MER1_type 0 2862 2655 563 88 0 0 chr9 5557868 5557948 -136713496 + Alu SINE Alu 217 296 -15 2637 192 98 143 chr9 5557948 5559754 -136711690 - Charlie2a DNA MER1_type -207 2655 871 1148 184 37 110 chr9 5559754 5560128 -136711316 - MLT1A1 LTR MaLR 0 365 19 328 342 167 30 chr9 5560511 5560892 -136710552 - L2 LINE L2 -773 2541 2077 3515 138 60 18 chr9 5560892 5561573 -136709871 - MER67C LTR ERV1 0 710 1 328 342 167 30 chr9 5561573 5561682 -136709762 - L2 LINE L2 -1237 2077 1984 694 202 8 0 chr9 5562337 5562461 -136708983 - MER68 LTR ERV1 0 562 438 * 1176 166 85 0 chr9 5562458 5562681 -136708763 - MER68 LTR ERV1 -320 242 1 3903 154 32 11 chr9 5562936 5563662 -136707782 - L1PB4 LINE L1 -3 6153 5413 1914 193 21 5 chr9 5563673 5564247 -136707197 - L1PB4 LINE L1 -751 5395 4887 1769 146 3 6 chr9 5564245 5564574 -136706870 + L1PB4 LINE L1 4556 4883 -1263 * 529 265 108 79 chr9 5564881 5565642 -136705802 - L1ME4a LINE L1 -74 6047 5258 369 0 0 0 chr9 5567853 5567894 -136703550 + (TG)n Simple_repeat Simple_repeat 2 42 0 23 86 0 0 chr9 5569646 5569704 -136701740 + AT_rich Low_complexity Low_complexity 1 58 0 2610 42 0 3 chr9 5570492 5570801 -136700643 - AluY SINE Alu -3 308 1 2413 79 0 7 chr9 5571208 5571512 -136699932 - AluSq SINE Alu -11 302 1 438 189 175 63 chr9 5572824 5573030 -136698414 + MER106A DNA MER1_type 7 235 -1 10756 124 20 18 chr9 5573206 5575130 -136696314 + L1PA7 LINE L1 1383 4098 -3486 18309 79 10 1 chr9 5575132 5578512 -136692932 + L1PA7 LINE L1 4161 7588 -4 21 0 0 0 chr9 5578676 5578697 -136692747 + AT_rich Low_complexity Low_complexity 1 21 0 22 0 0 0 chr9 5578815 5578837 -136692607 + AT_rich Low_complexity Low_complexity 1 22 0 287 194 126 39 chr9 5578970 5579073 -136692371 - L1M4 LINE L1 -699 5475 5364 318 308 42 30 chr9 5579401 5579581 -136691863 - MIR3 SINE MIR -23 185 1 282 330 93 22 chr9 5580239 5580421 -136691023 + L2 LINE L2 2590 2784 -530 19260 173 38 14 chr9 5580488 5583436 -136688008 - L1PA13 LINE L1 -2 6812 3936 2237 108 3 0 chr9 5583436 5583731 -136687713 - AluSx SINE Alu -16 296 1 19260 173 38 14 chr9 5583731 5586452 -136684992 - L1PA13 LINE L1 -2878 3936 890 1855 263 58 0 chr9 5586466 5586895 -136684549 - L1PA13 LINE L1 -5950 837 384 2671 120 5 2 chr9 5586922 5587330 -136684114 - L1PA12 LINE L1 -5579 2002 1594 2294 260 60 7 chr9 5587342 5588115 -136683329 - L1PA12 LINE L1 -4509 3072 2259 321 202 36 12 chr9 5588417 5588501 -136682943 - L1PA12 LINE L1 -5412 2169 2084 584 327 148 26 chr9 5588755 5589174 -136682270 - L1PA12 LINE L1 -6317 1257 788 4266 184 50 11 chr9 5589198 5590619 -136680825 + L1PB4 LINE L1 4321 5809 -347 315 0 0 0 chr9 5590619 5590654 -136680790 + (CA)n Simple_repeat Simple_repeat 2 36 0 4266 184 50 11 chr9 5590654 5591004 -136680440 + L1PB4 LINE L1 5809 6144 -12 251 239 71 9 chr9 5591010 5591123 -136680321 + HsTC2 DNA Tc2 251 370 -1528 1467 233 118 31 chr9 5591179 5592515 -136678929 + L1MEc LINE L1 1850 3286 -2929 4580 129 16 0 chr9 5592521 5593256 -136678188 + L1P3 LINE L1 2 748 -5713 9384 62 1 1 chr9 5593256 5595260 -136676184 + L1PA4 LINE L1 4145 6155 0 3057 52 0 5 chr9 5595318 5595706 -136675738 + L1PA7 LINE L1 5769 6154 0 2014 215 179 97 chr9 5595706 5596691 -136674753 + L1MEc LINE L1 3281 4184 -2031 740 142 17 0 chr9 5596691 5596811 -136674633 + AluSg/x SINE Alu 185 306 -6 2014 215 179 97 chr9 5596811 5597418 -136674026 + L1MEc LINE L1 4184 5133 -1082 9277 162 25 27 chr9 5597426 5599662 -136671782 + L1M1 LINE L1 1931 4166 -3399 2255 101 0 13 chr9 5599662 5599969 -136671475 + AluSq SINE Alu 1 303 -10 9277 162 25 27 chr9 5599969 5601593 -136669851 + L1M1 LINE L1 4166 5792 -1773 1608 141 42 15 chr9 5601594 5601857 -136669587 + AluJo SINE Alu 25 294 -18 975 188 11 21 chr9 5602851 5603037 -136668407 - MER5A DNA MER1_type -1 188 5 3913 173 58 13 chr9 5604260 5604698 -136666746 - L1MB7 LINE L1 -20 6164 5747 2147 122 0 10 chr9 5604698 5605002 -136666442 + AluSx SINE Alu 1 301 -11 3913 173 58 13 chr9 5605002 5605397 -136666047 - L1MB7 LINE L1 -437 5747 5294 212 0 36 0 chr9 5605974 5606002 -136665442 + (TTTTTG)n Simple_repeat Simple_repeat 2 30 0 359 298 135 7 chr9 5606178 5606614 -136664830 + L1 LINE L1 3196 3687 -2459 21544 170 43 24 chr9 5606735 5608700 -136662744 + L1PA10 LINE L1 10 1937 -4546 2116 121 3 3 chr9 5608700 5608997 -136662447 - AluSq SINE Alu -15 298 2 21544 170 43 24 chr9 5608997 5612419 -136659025 + L1PA10 LINE L1 1937 5659 -824 2228 118 3 0 chr9 5612419 5612716 -136658728 + AluSx SINE Alu 1 298 -14 21544 170 43 24 chr9 5612716 5613557 -136657887 + L1PA10 LINE L1 5659 6483 0 4023 253 117 49 chr9 5613644 5614712 -136656732 + L2 LINE L2 1361 2355 -958 2403 73 0 3 chr9 5614712 5615012 -136656432 - AluY SINE Alu -12 299 1 4023 253 117 49 chr9 5615012 5615292 -136656152 + L2 LINE L2 2355 2614 -699 3612 123 13 8 chr9 5615292 5615814 -136655630 + MER1A DNA MER1_type 3 527 0 4023 253 117 49 chr9 5615814 5616290 -136655154 + L2 LINE L2 2614 3312 -1 244 303 40 0 chr9 5616385 5616484 -136654960 + L1 LINE L1 3987 4089 -2057 331 226 99 23 chr9 5616552 5616773 -136654671 + L1 LINE L1 4231 4468 -1678 3533 226 62 51 chr9 5616859 5617638 -136653806 + L1PA12 LINE L1 4 802 -6779 2230 127 3 0 chr9 5617638 5617945 -136653499 - AluSx SINE Alu -2 310 3 3533 226 62 51 chr9 5617945 5618351 -136653093 + L1PA12 LINE L1 802 1202 -6379 6383 79 34 0 chr9 5618355 5619791 -136651653 + L1PA11 LINE L1 4716 6174 0 5784 50 143 60 chr9 5619825 5620897 -136650547 + MER11A LTR ERVK 1 1266 0 342 324 115 61 chr9 5620899 5621341 -136650103 + L1ME3A LINE L1 4581 5046 -1100 568 325 99 11 chr9 5621486 5622036 -136649408 + L1ME3A LINE L1 5256 5847 -323 466 259 114 6 chr9 5622206 5622364 -136649080 + L2 LINE L2 3135 3309 -4 25 0 0 0 chr9 5622989 5623014 -136648430 + AT_rich Low_complexity Low_complexity 1 25 0 474 247 213 7 chr9 5623589 5623739 -136647705 + MER5A DNA MER1_type 9 189 0 197 167 24 0 chr9 5623918 5623960 -136647484 - L2 LINE L2 0 3313 3271 394 181 26 60 chr9 5624564 5624680 -136646764 + MER45 DNA AcHobo 1463 1574 -7 300 313 134 18 chr9 5624741 5624853 -136646591 - L2 LINE L2 -206 3066 2942 190 278 28 28 chr9 5625892 5625964 -136645480 + L2 LINE L2 3161 3232 -40 880 214 54 17 chr9 5626761 5627055 -136644389 + L1M1 LINE L1 3358 3662 -3903 2239 219 33 10 chr9 5627061 5627389 -136644055 + L1M1 LINE L1 4027 4377 -3188 2099 122 0 3 chr9 5627389 5627677 -136643767 + AluSx SINE Alu 1 287 -25 2239 219 33 10 chr9 5627677 5627955 -136643489 + L1M1 LINE L1 4377 4647 -2918 1882 255 49 89 chr9 5627950 5628976 -136642468 - L1P3 LINE L1 -5467 994 10 * 352 58 0 39 chr9 5629107 5629159 -136642285 + THE1B LTR MaLR 1 50 -314 1745 224 81 35 chr9 5629620 5630285 -136641159 - L1MD1 LINE L1 -5 6237 5542 912 278 67 9 chr9 5630417 5630853 -136640591 + MLT1C LTR MaLR 1 461 -6 233 200 0 0 chr9 5631358 5631408 -136640036 + (CAGAGA)n Simple_repeat Simple_repeat 3 52 0 4717 129 6 0 chr9 5636137 5636864 -136634580 - L1PA16 LINE L1 -4 6162 5432 2829 258 50 30 chr9 5637754 5638991 -136632453 - L1MD1 LINE L1 -872 5274 4013 1162 238 84 35 chr9 5639223 5639685 -136631759 - L1MD1 LINE L1 0 6242 5758 416 341 17 12 chr9 5639808 5639981 -136631463 + MER5B DNA MER1_type 5 178 0 351 0 0 0 chr9 5640301 5640340 -136631104 + (TCTA)n Simple_repeat Simple_repeat 4 42 0 22 0 0 0 chr9 5640926 5640948 -136630496 + AT_rich Low_complexity Low_complexity 1 22 0 2858 122 7 5 chr9 5643733 5644160 -136627284 - MSTA LTR MaLR 0 428 1 380 305 19 0 chr9 5644303 5644457 -136626987 - MER5B DNA MER1_type -21 157 1 232 229 33 0 chr9 5645480 5645541 -136625903 - MER5B DNA MER1_type -33 145 83 243 71 214 0 chr9 5645544 5645586 -136625858 + LTR50 LTR ERVL 272 322 -473 595 215 19 65 chr9 5645736 5645997 -136625447 + L1MA4 LINE L1 3210 3458 -4107 * 11406 169 21 41 chr9 5645994 5646555 -136624889 + L1MA4 LINE L1 4156 4727 -2992 2229 114 0 7 chr9 5646555 5646862 -136624582 + AluSx SINE Alu 3 307 -5 11406 169 21 41 chr9 5646862 5649937 -136621507 + L1MA4 LINE L1 4727 7712 -7 900 125 33 20 chr9 5651522 5651674 -136619770 - MSTC LTR MaLR -273 155 2 2030 249 69 25 chr9 5651836 5652530 -136618914 + L1MD1 LINE L1 5509 6233 -9 230 207 0 0 chr9 5652533 5652591 -136618853 + L1MA8 LINE L1 5291 5348 -823 422 163 12 12 chr9 5652602 5652688 -136618756 + L1MB3 LINE L1 6081 6166 -17 1786 178 55 17 chr9 5652708 5653125 -136618319 + L1MA8 LINE L1 5843 6275 -16 356 264 91 30 chr9 5653132 5653363 -136618081 + L1M4 LINE L1 5 249 -6293 356 222 60 26 chr9 5653636 5653753 -136617691 + L1M4 LINE L1 802 922 -5724 231 229 0 0 chr9 5653805 5653853 -136617591 + L1M4 LINE L1 1412 1459 -5116 1752 136 0 4 chr9 5653855 5654112 -136617332 - AluSx SINE Alu -8 304 49 1253 289 43 36 chr9 5654148 5654678 -136616766 + L1M3e LINE L1 1439 1972 -5058 * 5375 48 12 2 chr9 5654677 5655580 -136615864 + L1PA7 LINE L1 5020 5928 -226 1077 137 11 42 chr9 5655580 5655770 -136615674 - THE1B LTR MaLR -180 184 1 1726 150 13 37 chr9 5656282 5656582 -136614862 - AluJo SINE Alu -19 293 1 24 91 0 0 chr9 5657059 5657125 -136614319 + AT_rich Low_complexity Low_complexity 1 66 0 357 326 17 34 chr9 5658130 5658308 -136613136 - MER5B DNA MER1_type -3 175 1 2561 184 8 6 chr9 5658420 5658893 -136612551 + MER101 LTR ERV1 1 474 0 1428 219 66 22 chr9 5658932 5659385 -136612059 + L1MD1 LINE L1 5770 6242 0 2409 228 78 50 chr9 5659655 5660018 -136611426 + L1MB2 LINE L1 4076 4427 -1719 3654 88 32 4 chr9 5660018 5660515 -136610929 + MER9 LTR ERVK 1 511 0 2409 228 78 50 chr9 5660515 5661124 -136610320 + L1MB2 LINE L1 4427 5075 -1071 228 265 163 25 chr9 5661169 5661365 -136610079 + L1MB2 LINE L1 5052 5274 -872 23 0 0 0 chr9 5661697 5661720 -136609724 + AT_rich Low_complexity Low_complexity 1 23 0 21339 173 39 18 chr9 5661911 5667651 -136603793 + L1PA11 LINE L1 914 7609 -3 441 0 0 0 chr9 5667823 5667872 -136603572 + (TG)n Simple_repeat Simple_repeat 1 49 0 1586 128 28 17 chr9 5668374 5668663 -136602781 + LTR22B LTR ERVK 1 292 -200 12290 97 10 1 chr9 5668663 5670320 -136601124 + HERVK22 LTR ERVK 5165 6837 0 2594 140 30 34 chr9 5670320 5670814 -136600630 + LTR22B LTR ERVK 1 492 0 1274 139 29 8 chr9 5673816 5674054 -136597390 + L1MA4 LINE L1 6046 6288 -12 192 326 58 0 chr9 5675335 5675421 -136596023 - L2 LINE L2 -23 3290 3200 1005 214 150 20 chr9 5675724 5676070 -136595374 - MLT1C LTR MaLR -17 450 60 1793 191 42 35 chr9 5676076 5676501 -136594943 - MSTC LTR MaLR 0 428 1 1433 233 50 94 chr9 5676658 5677372 -136594072 + L1MD1 LINE L1 5546 6228 -14 3467 227 38 15 chr9 5677380 5678223 -136593221 + L1MB2 LINE L1 5291 6152 -19 1937 161 79 12 chr9 5678251 5678668 -136592776 + L1MA8 LINE L1 5843 6287 -4 321 254 85 34 chr9 5678674 5678907 -136592537 + L1M4c LINE L1 467 955 -6082 423 0 0 0 chr9 5679098 5679145 -136592299 + (CA)n Simple_repeat Simple_repeat 2 48 0 366 301 175 6 chr9 5679228 5679554 -136591890 + L1M4c LINE L1 1266 1646 -5462 7963 14 0 0 chr9 5679571 5680827 -136590617 - L1HS LINE L1 0 6155 4900 * 18776 24 0 0 chr9 5680822 5683054 -136588390 + L1HS LINE L1 2673 4904 -1242 443 217 24 63 chr9 5683049 5683256 -136588188 + L1M4c LINE L1 1629 1827 -5281 * 1282 313 47 5 chr9 5683251 5683999 -136587445 + L1 LINE L1 3547 4325 -1821 2742 280 44 26 chr9 5684001 5686176 -136585268 + L1M3c LINE L1 1224 3166 -3940 7145 50 0 0 chr9 5686176 5687186 -136584258 - L1PA7 LINE L1 -5 6149 5139 2742 280 44 26 chr9 5687186 5687356 -136584088 + L1M3c LINE L1 3166 3332 -3774 988 173 42 0 chr9 5687390 5687581 -136583863 + L1PB1 LINE L1 2 200 -6663 11272 131 70 16 chr9 5687581 5690800 -136580644 + L1PB1 LINE L1 634 3678 -3189 339 25 0 0 chr9 5690800 5690840 -136580604 + (CA)n Simple_repeat Simple_repeat 2 41 0 11272 131 70 16 chr9 5690840 5691188 -136580256 + L1PB1 LINE L1 3678 6866 -1 2265 252 26 6 chr9 5691198 5691881 -136579563 + L1M3c LINE L1 3348 4044 -3062 760 271 80 3 chr9 5691873 5692246 -136579198 + L1 LINE L1 2810 3211 -2935 * 5292 166 26 7 chr9 5692249 5693980 -136577464 - L1PB4 LINE L1 -12 6847 4892 12912 155 23 31 chr9 5693984 5697371 -136574073 - L1PA6 LINE L1 0 6154 2789 454 128 23 23 chr9 5697382 5697468 -136573976 - L1PB4 LINE L1 -3362 3487 3402 17886 118 37 20 chr9 5697468 5698670 -136572774 - MER57B-int LTR ERV1 -744 6793 5613 6710 112 27 18 chr9 5698670 5699731 -136571713 + MER11C LTR ERVK 1 1071 0 17886 118 37 20 chr9 5699731 5701665 -136569779 - MER57B-int LTR ERV1 -1924 5613 1276 889 124 29 0 chr9 5701675 5701812 -136569632 - MER57B-int LTR ERV1 -4616 2921 2781 699 157 0 9 chr9 5701808 5701923 -136569521 - MER57B-int LTR ERV1 -3929 2017 1904 * 3604 135 45 10 chr9 5701924 5702494 -136568950 - MER57B-int LTR ERV1 -4231 3585 3037 204 40 0 0 chr9 5702494 5702519 -136568925 + (TTTTG)n Simple_repeat Simple_repeat 1 25 0 3604 135 45 10 chr9 5702519 5702722 -136568722 - MER57B-int LTR ERV1 -4779 3037 648 1264 109 0 0 chr9 5702714 5702889 -136568555 - MER57B-int LTR ERV1 -6570 967 793 * 4334 130 24 13 chr9 5702877 5703554 -136567890 - MER57B-int LTR ERV1 -6853 684 1 2523 138 35 19 chr9 5703554 5703981 -136567463 - MER57B LTR ERV1 0 434 1 2519 255 60 64 chr9 5703982 5706064 -136565380 - L1PB4 LINE L1 -3674 3175 987 981 313 26 55 chr9 5706170 5706861 -136564583 - L1PB4 LINE L1 -6176 673 3 3646 180 41 51 chr9 5706862 5707891 -136563553 - L1MCa LINE L1 -4588 1838 731 399 248 19 9 chr9 5708954 5709059 -136562385 - LTR39 LTR ERV1 -81 702 597 1092 198 18 94 chr9 5709137 5709476 -136561968 - LTR39 LTR ERV1 -467 316 4 764 299 43 4 chr9 5709616 5709850 -136561594 - MIR SINE MIR 0 262 20 6105 140 11 25 chr9 5710320 5711344 -136560100 + MSTA-int LTR MaLR 572 1580 0 1764 150 203 11 chr9 5711344 5711703 -136559741 + MSTA LTR MaLR 1 428 0 5384 167 33 10 chr9 5712295 5713324 -136558120 - Ricksha_b DNA DNA -13 1241 240 609 197 71 0 chr9 5713335 5713462 -136557982 - Ricksha_b DNA DNA -1117 137 2 3093 235 44 20 chr9 5714100 5714892 -136556552 + L1MCa LINE L1 1 811 -5615 2800 212 16 18 chr9 5714888 5715671 -136555773 + L1PA15-16 LINE L1 1637 2428 -4369 * 2614 111 16 18 chr9 5715739 5716126 -136555318 + MSTB1 LTR MaLR 1 386 -46 5691 146 4 10 chr9 5716126 5717402 -136554042 + L1PA15 LINE L1 4879 6144 -21 2831 245 136 73 chr9 5717419 5718204 -136553240 + L1M4 LINE L1 2247 2982 -3164 1857 169 5 66 chr9 5718204 5718631 -136552813 + MER57A LTR ERV1 3 403 0 2831 245 136 73 chr9 5718631 5718910 -136552534 + L1M4 LINE L1 2982 3242 -2904 2014 139 0 0 chr9 5718910 5719204 -136552240 + AluSx SINE Alu 1 294 -18 2831 245 136 73 chr9 5719204 5719521 -136551923 + L1M4 LINE L1 3242 3538 -2608 2178 108 14 0 chr9 5719521 5719807 -136551637 + AluSc SINE Alu 1 290 -19 2831 245 136 73 chr9 5719807 5719868 -136551576 + L1M4 LINE L1 3538 3594 -2552 13526 89 9 0 chr9 5719868 5722579 -136548865 + L1PA8 LINE L1 3425 6170 -2 2831 245 136 73 chr9 5722579 5722877 -136548567 + L1M4 LINE L1 3594 4099 -2047 2198 166 42 14 chr9 5722886 5723319 -136548125 + L1MA7 LINE L1 5528 5972 -328 830 228 30 42 chr9 5723318 5723555 -136547889 + L1MCb LINE L1 605 838 -5207 * 2645 200 73 10 chr9 5723566 5724265 -136547179 + L1MCb LINE L1 893 1635 -4929 934 194 0 0 chr9 5724269 5724439 -136547005 + L1MB4 LINE L1 3999 4168 -1978 2092 269 75 28 chr9 5724471 5725287 -136546157 - L1M2 LINE L1 -6005 1204 1 1542 145 25 0 chr9 5725291 5725573 -136545871 + L1MA7 LINE L1 6001 6289 -2 3307 168 22 58 chr9 5725599 5725958 -136545486 + L1MB4 LINE L1 5435 5805 -375 339 25 0 0 chr9 5725958 5725998 -136545446 + (TG)n Simple_repeat Simple_repeat 2 41 0 3307 168 22 58 chr9 5725998 5726412 -136545032 + L1MB4 LINE L1 5805 6180 0 5336 179 21 21 chr9 5726416 5726704 -136544740 + L1MC2 LINE L1 5023 5309 -1035 12522 161 19 15 chr9 5726704 5728153 -136543291 - L1PA11 LINE L1 -4 6170 4729 197 33 33 0 chr9 5728153 5728183 -136543261 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 12522 161 19 15 chr9 5728183 5729876 -136541568 - L1PA11 LINE L1 -1445 4729 3022 5336 179 21 21 chr9 5729876 5730902 -136540542 + L1MC2 LINE L1 5309 6343 -1 1048 161 15 62 chr9 5730902 5731151 -136540293 + L1MC2 LINE L1 6089 6336 -8 342 256 82 73 chr9 5731488 5731721 -136539723 + MLT1J LTR MaLR 61 333 -178 31776 107 14 18 chr9 5732554 5738946 -136532498 + L1PA7 LINE L1 10 6469 0 193 345 101 17 chr9 5741679 5741798 -136529646 - L3b LINE CR1 -99 1484 1356 27 29 0 0 chr9 5741924 5741958 -136529486 + AT_rich Low_complexity Low_complexity 1 34 0 366 290 101 5 chr9 5742406 5742623 -136528821 + L1ME4a LINE L1 5645 5882 -239 396 0 0 0 chr9 5745132 5745176 -136526268 + (CA)n Simple_repeat Simple_repeat 1 44 0 225 0 0 0 chr9 5745175 5745200 -136526244 + (GA)n Simple_repeat Simple_repeat 2 26 0 * 1978 116 7 0 chr9 5745869 5746146 -136525298 - AluSq SINE Alu 0 313 35 274 250 107 68 chr9 5746626 5746831 -136524613 + MLT1J LTR MaLR 61 311 -200 703 19 48 0 chr9 5746991 5747096 -136524348 + (TAGA)n Simple_repeat Simple_repeat 2 111 0 21 0 0 0 chr9 5747642 5747663 -136523781 + AT_rich Low_complexity Low_complexity 1 21 0 22 0 0 0 chr9 5747814 5747836 -136523608 + AT_rich Low_complexity Low_complexity 1 22 0 2370 190 51 0 chr9 5748430 5748919 -136522525 + LTR53 LTR ERVL 6 519 0 195 357 97 32 chr9 5749013 5749321 -136522123 + L2 LINE L2 2634 2961 -353 1992 146 73 2 chr9 5750336 5750760 -136520684 - L1MCa LINE L1 -4112 2314 1861 933 18 0 0 chr9 5751598 5751707 -136519737 - L1PA2 LINE L1 0 6155 6047 487 20 2 0 chr9 5751707 5751780 -136519664 + L1M LINE L1 5279 5352 -812 2939 206 35 21 chr9 5752504 5753309 -136518135 - L1 LINE L1 -3153 2993 2178 786 158 0 29 chr9 5753316 5753487 -136517957 - L1MA7 LINE L1 0 6291 6126 5039 237 98 6 chr9 5753488 5754752 -136516692 + L1M2a LINE L1 -779 600 -5783 4162 222 48 29 chr9 5754746 5756079 -136515365 + L1M2a LINE L1 911 2064 -4320 * 4535 64 25 3 chr9 5756079 5756671 -136514773 - L1PA7 LINE L1 0 6154 5550 4162 222 48 29 chr9 5756671 5757101 -136514343 + L1M2a LINE L1 2064 2484 -3900 896 133 0 0 chr9 5757117 5757237 -136514207 + AluSg/x SINE Alu 174 293 -17 1077 225 44 24 chr9 5757438 5757767 -136513677 + L1MC/D LINE L1 5263 5601 -2207 297 51 0 0 chr9 5757767 5757806 -136513638 + (TG)n Simple_repeat Simple_repeat 2 40 0 869 131 0 8 chr9 5757823 5757945 -136513499 - AluSq/x SINE Alu -192 121 1 2197 121 0 0 chr9 5759760 5760057 -136511387 - AluSx SINE Alu -14 298 2 2020 143 0 7 chr9 5760143 5760443 -136511001 - AluSx SINE Alu -14 298 1 238 304 328 12 chr9 5761103 5761353 -136510091 + L2 LINE L2 2984 3312 -1 268 225 36 0 chr9 5761359 5761470 -136509974 + GA-rich Low_complexity Low_complexity 3 117 0 432 222 116 62 chr9 5762631 5763148 -136508296 + MER34 LTR ERV1 42 542 0 1882 148 3 7 chr9 5763536 5763843 -136507601 + AluSx SINE Alu 1 306 0 33 43 0 0 chr9 5764839 5764886 -136506558 + AT_rich Low_complexity Low_complexity 1 47 0 494 292 149 11 chr9 5766004 5766367 -136505077 - LTR33 LTR ERVL -87 434 22 22 0 0 0 chr9 5766669 5766691 -136504753 + AT_rich Low_complexity Low_complexity 1 22 0 22418 112 13 29 chr9 5766701 5768794 -136502650 + L1P LINE L1 11 2136 -4010 2855 22 0 0 chr9 5768794 5769111 -136502333 + AluYb8 SINE Alu 1 317 -1 22418 112 13 29 chr9 5769111 5770129 -136501315 + L1P LINE L1 2136 3054 -3092 2410 84 0 0 chr9 5770129 5770438 -136501006 + AluY SINE Alu 1 309 -2 22418 112 13 29 chr9 5770438 5771119 -136500325 + L1P LINE L1 3054 3744 -2402 3835 56 14 0 chr9 5771119 5771600 -136499844 + L1PA6 LINE L1 5660 6152 -2 507 329 18 28 chr9 5771615 5772004 -136499440 + L1MC4a LINE L1 5548 5932 -1876 2199 84 24 10 chr9 5772393 5772689 -136498755 - AluSq SINE Alu -13 300 1 6320 136 8 1 chr9 5773049 5774110 -136497334 + L1P LINE L1 3242 4310 -1836 261 0 0 0 chr9 5776762 5776791 -136494653 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 24 0 0 0 chr9 5777108 5777132 -136494312 + AT_rich Low_complexity Low_complexity 1 24 0 283 276 126 14 chr9 5777575 5777789 -136493655 + L1ME4a LINE L1 5645 5882 -239 21 0 0 0 chr9 5780233 5780254 -136491190 + AT_rich Low_complexity Low_complexity 1 21 0 194 146 0 24 chr9 5780296 5780337 -136491107 + (GAAA)n Simple_repeat Simple_repeat 4 43 0 2032 104 0 22 chr9 5781008 5781286 -136490158 - AluSq SINE Alu -7 306 35 4244 220 59 15 chr9 5781626 5782246 -136489198 + L1MA9 LINE L1 2527 3118 -3028 2141 145 3 0 chr9 5782246 5782557 -136488887 - AluSx SINE Alu 0 312 1 4244 220 59 15 chr9 5782557 5783234 -136488210 + L1MA9 LINE L1 3118 3881 -2265 2842 99 9 5 chr9 5783242 5783664 -136487780 + L1PB1 LINE L1 5728 6151 0 1711 134 39 36 chr9 5783703 5784039 -136487405 + L1MC3 LINE L1 7441 7777 -8 504 295 5 37 chr9 5784126 5784316 -136487128 + MIR SINE MIR 78 261 -1 4392 181 22 22 chr9 5784397 5785396 -136486048 + L1MA6 LINE L1 5299 6297 -3 6281 192 17 40 chr9 5785401 5786880 -136484564 + L1MA9 LINE L1 3928 5439 -873 2744 20 0 0 chr9 5786880 5787185 -136484259 + AluY SINE Alu 1 305 -6 6281 192 17 40 chr9 5787185 5787585 -136483859 + L1MA9 LINE L1 5439 5757 -555 195 42 0 0 chr9 5787585 5787609 -136483835 + (TG)n Simple_repeat Simple_repeat 1 24 0 6281 192 17 40 chr9 5787609 5788072 -136483372 + L1MA9 LINE L1 5757 6229 -83 351 164 0 0 chr9 5788097 5788152 -136483292 - MER2 DNA MER2_type -10 335 281 * 638 278 11 6 chr9 5788126 5788302 -136483142 - MER8 DNA MER2_type -60 179 3 692 244 121 22 chr9 5788454 5788819 -136482625 - L1M1 LINE L1 -4200 3365 2965 1058 181 0 0 chr9 5788819 5788990 -136482454 + AluSg/x SINE Alu 132 302 -8 2305 269 57 12 chr9 5788990 5789364 -136482080 - L1M2 LINE L1 -4271 2897 2541 2315 90 3 0 chr9 5789364 5789665 -136481779 - AluY SINE Alu -9 302 1 2305 269 57 12 chr9 5789665 5790499 -136480945 - L1M2 LINE L1 -4627 2541 1623 306 106 0 0 chr9 5791307 5791354 -136480090 + (TG)n Simple_repeat Simple_repeat 2 48 0 231 250 25 50 chr9 5791606 5791726 -136479718 - L1MC5 LINE L1 -44 7917 7801 426 184 117 81 chr9 5791767 5791990 -136479454 - L1ME2 LINE L1 -24 6140 5910 21 0 0 0 chr9 5794571 5794592 -136476852 + AT_rich Low_complexity Low_complexity 1 21 0 316 316 105 0 chr9 5794674 5794807 -136476637 + MIR3 SINE MIR 52 198 -10 27 0 0 0 chr9 5795516 5795543 -136475901 + AT_rich Low_complexity Low_complexity 1 27 0 250 313 70 62 chr9 5796384 5796661 -136474783 + L2 LINE L2 2755 3028 -244 695 255 39 77 chr9 5796807 5797117 -136474327 + L2 LINE L2 3010 3307 -6 459 278 125 37 chr9 5797397 5797613 -136473831 + MIR SINE MIR 23 257 -5 22 0 0 0 chr9 5797854 5797876 -136473568 + AT_rich Low_complexity Low_complexity 1 22 0 25 31 0 0 chr9 5797893 5797925 -136473519 + AT_rich Low_complexity Low_complexity 1 32 0 1900 131 48 3 chr9 5798832 5799122 -136472322 - AluSx SINE Alu -9 303 1 1799 203 71 30 chr9 5799577 5800084 -136471360 + MER63C DNA MER1_type 1 528 -402 779 214 99 5 chr9 5800085 5800286 -136471158 - MER58A DNA MER1_type -4 220 1 1270 211 53 65 chr9 5800286 5800704 -136470740 + MER63C DNA MER1_type 518 930 0 201 225 87 55 chr9 5801164 5801262 -136470182 + MIR SINE MIR 85 187 -55 492 213 21 112 chr9 5803854 5804042 -136467402 + MER5B DNA MER1_type 4 174 -4 4056 200 48 46 chr9 5804147 5805233 -136466211 + L1MC3 LINE L1 6018 7105 -680 316 247 12 0 chr9 5805235 5805320 -136466124 + MLT1F1 LTR MaLR 39 124 -443 897 234 62 4 chr9 5805339 5805613 -136465831 + L1MC3 LINE L1 7495 7784 -1 1806 183 13 38 chr9 5806330 5806779 -136464665 + L1 LINE L1 3952 4389 -1757 417 81 0 0 chr9 5806779 5806841 -136464603 + (CA)n Simple_repeat Simple_repeat 2 63 0 5842 109 28 2 chr9 5806855 5808512 -136462932 + L1PA16 LINE L1 4480 6165 -1 6657 47 37 6 chr9 5808516 5809888 -136461556 + L1PA7 LINE L1 4778 6177 0 2536 100 17 0 chr9 5811077 5811426 -136460018 + THE1A LTR MaLR 1 355 0 2003 90 4 4 chr9 5811759 5812015 -136459429 - AluSc SINE Alu -17 292 37 225 337 49 18 chr9 5812176 5812339 -136459105 - LTR67 LTR ERVL -19 538 371 451 219 50 17 chr9 5812647 5812766 -136458678 - MIR SINE MIR -111 151 29 189 331 44 37 chr9 5812951 5813087 -136458357 + L2 LINE L2 1772 1908 -1406 1433 196 79 0 chr9 5813290 5813570 -136457874 + AluJb SINE Alu 1 302 0 297 338 89 14 chr9 5813723 5813936 -136457508 + L2 LINE L2 2088 2316 -998 276 369 130 27 chr9 5813981 5814312 -136457132 + L2 LINE L2 2549 2913 -401 270 309 128 21 chr9 5814326 5814420 -136457024 + MIR SINE MIR 20 123 -139 3375 144 20 8 chr9 5815457 5816061 -136455383 + L1MB3 LINE L1 5478 6088 -95 644 250 60 6 chr9 5816073 5816249 -136455195 + MIR SINE MIR 7 185 -27 296 236 27 73 chr9 5816249 5816359 -136455085 + L1MC4a LINE L1 5530 5634 -2174 183 42 0 0 chr9 5816409 5816433 -136455011 + (CAT)n Simple_repeat Simple_repeat 2 25 0 317 217 60 0 chr9 5816446 5816529 -136454915 + L1MC4a LINE L1 5835 5922 -1886 192 77 0 0 chr9 5816537 5816563 -136454881 + (CATA)n Simple_repeat Simple_repeat 3 28 0 25 31 0 0 chr9 5816745 5816777 -136454667 + AT_rich Low_complexity Low_complexity 1 32 0 398 295 10 82 chr9 5817831 5818038 -136453406 + HAL1 LINE L1 762 953 -1554 572 228 66 12 chr9 5818190 5818357 -136453087 + L1ME3A LINE L1 5836 6011 -159 317 324 86 31 chr9 5818414 5818810 -136452634 + L1ME LINE L1 2397 2824 -3322 604 163 108 0 chr9 5819144 5819273 -136452171 - MER3 DNA MER1_type -1 208 66 513 323 86 14 chr9 5819400 5819830 -136451614 + L1ME LINE L1 5338 5798 -323 2393 76 0 16 chr9 5819855 5820171 -136451273 + AluY SINE Alu 1 311 0 268 271 29 71 chr9 5820171 5820311 -136451133 - MIR SINE MIR -2 260 127 * 809 253 53 32 chr9 5820287 5820572 -136450872 + L2 LINE L2 3021 3311 -2 1818 129 97 23 chr9 5820581 5820930 -136450514 + THE1C LTR MaLR 1 375 0 2337 121 3 16 chr9 5820951 5821331 -136450113 + THE1-int LTR MaLR 549 923 -657 235 174 0 0 chr9 5821382 5821428 -136450016 - MSTA LTR MaLR 0 428 383 619 305 103 47 chr9 5822126 5822691 -136448753 - L2 LINE L2 -217 3055 2454 1127 233 99 35 chr9 5822697 5823131 -136448313 + MLT1C LTR MaLR 6 467 0 3366 104 87 0 chr9 5823161 5823643 -136447801 - MER1A DNA MER1_type 0 527 4 251 318 73 0 chr9 5823664 5823774 -136447670 - L2 LINE L2 -896 2418 2301 205 316 131 53 chr9 5823837 5824081 -136447363 - L2 LINE L2 -1018 2296 2034 25 0 0 0 chr9 5824660 5824685 -136446759 + AT_rich Low_complexity Low_complexity 1 25 0 438 296 10 36 chr9 5824742 5824938 -136446506 - L2 LINE L2 -410 2904 2714 815 88 0 0 chr9 5825119 5825221 -136446223 - AluY SINE Alu -162 149 48 1480 257 41 33 chr9 5825511 5826024 -136445420 + LTR40a LTR ERVL 3 519 0 1072 165 46 46 chr9 5826114 5826332 -136445112 + MER20 DNA MER1_type 2 219 0 416 325 8 0 chr9 5826669 5826786 -136444658 - L2 LINE L2 -380 2934 2817 287 329 206 0 chr9 5826803 5826949 -136444495 - MER5A DNA MER1_type 0 189 14 542 250 68 0 chr9 5826961 5827093 -136444351 - L2 LINE L2 -505 2809 2669 1398 246 55 14 chr9 5827125 5827564 -136443880 + L1ME3 LINE L1 5698 6154 -8 750 254 17 0 chr9 5827585 5827762 -136443682 - L2 LINE L2 -647 2667 2488 1139 251 52 25 chr9 5827772 5828134 -136443310 - L2 LINE L2 -1010 2304 1933 182 265 20 0 chr9 5828157 5828206 -136443238 + MIR SINE MIR 202 251 -11 792 229 6 0 chr9 5828530 5828687 -136442757 + MIR SINE MIR 102 259 -3 2038 215 45 6 chr9 5828706 5829241 -136442203 - MER90 LTR ERV1 0 575 20 180 296 28 42 chr9 5829426 5829497 -136441947 + L3 LINE CR1 276 345 -1232 321 118 0 0 chr9 5829964 5830015 -136441429 + (TG)n Simple_repeat Simple_repeat 2 52 0 184 239 65 0 chr9 5830481 5830527 -136440917 + MIR SINE MIR 158 206 -56 184 224 0 61 chr9 5831065 5831114 -136440330 - L2 LINE L2 -2886 428 383 750 291 45 5 chr9 5832320 5832543 -136438901 + MIR SINE MIR 30 261 -1 2389 102 0 0 chr9 5832609 5832914 -136438530 - AluSx SINE Alu -7 305 1 2328 94 0 0 chr9 5834179 5834478 -136436966 - AluSx SINE Alu -6 306 8 2304 112 0 0 chr9 5835661 5835965 -136435479 - AluSx SINE Alu -7 305 2 2193 117 0 29 chr9 5836051 5836367 -136435077 - AluSx SINE Alu -5 307 1 299 261 318 15 chr9 5837032 5837296 -136434148 + L2 LINE L2 2969 3312 -1 329 266 0 8 chr9 5837298 5837426 -136434018 + GA-rich Low_complexity Low_complexity 3 129 0 454 249 98 61 chr9 5838576 5839096 -136432348 + LTR48 LTR ERV1 1 787 0 1987 120 3 7 chr9 5839479 5839795 -136431649 + AluSx SINE Alu 1 315 0 189 361 76 25 chr9 5840413 5840532 -136430912 + L2 LINE L2 3188 3312 -1 26 64 0 0 chr9 5840791 5840838 -136430606 + AT_rich Low_complexity Low_complexity 1 47 0 21 0 0 0 chr9 5841575 5841596 -136429848 + AT_rich Low_complexity Low_complexity 1 21 0 671 280 123 23 chr9 5841995 5842424 -136429020 - LTR33 LTR ERVL -28 493 22 2536 71 0 3 chr9 5842987 5843297 -136428147 - AluSq SINE Alu -4 309 1 11439 109 13 3 chr9 5843654 5846540 -136424904 + L1PA10 LINE L1 3242 6158 -10 836 104 24 0 chr9 5846540 5846658 -136424786 + L1PB3 LINE L1 6020 6147 -7 224 281 90 0 chr9 5847239 5847328 -136424116 + L2 LINE L2 3217 3313 0 180 77 0 0 chr9 5847651 5847677 -136423767 + (TG)n Simple_repeat Simple_repeat 1 26 0 5348 191 36 8 chr9 5847918 5848926 -136422518 + MST-int LTR MaLR 51 1086 -565 3114 75 18 5 chr9 5848926 5849324 -136422120 + MLT2A1 LTR ERVL 1 403 -41 1904 158 22 33 chr9 5849324 5849684 -136421760 + THE1-int LTR MaLR 1065 1420 -160 28 61 0 0 chr9 5849809 5849858 -136421586 + AT_rich Low_complexity Low_complexity 1 49 0 1277 126 177 52 chr9 5850030 5850301 -136421143 + AluSg1 SINE Alu 5 309 0 242 174 22 0 chr9 5850356 5850402 -136421042 - MER65C LTR ERV1 -312 149 103 2298 121 0 3 chr9 5850874 5851187 -136420257 + AluSx SINE Alu 1 312 0 487 279 16 8 chr9 5851237 5851366 -136420078 - MIR SINE MIR -108 154 25 7959 253 74 40 chr9 5851578 5852120 -136419324 + L1MC4a LINE L1 4475 4997 -2811 1277 199 224 9 chr9 5852120 5852446 -136418998 + MSTD LTR MaLR 1 396 0 7959 253 74 40 chr9 5852446 5853083 -136418361 + L1MC4a LINE L1 4997 5611 -2197 2495 181 66 25 chr9 5853083 5853568 -136417876 + MLT1D LTR MaLR 1 505 0 7959 253 74 40 chr9 5853568 5853943 -136417501 + L1MC4a LINE L1 5611 5972 -1836 2137 117 0 3 chr9 5853943 5854233 -136417211 - AluSx SINE Alu -16 296 8 7959 253 74 40 chr9 5854233 5855901 -136415543 + L1MC4a LINE L1 5972 7807 -1 1459 207 43 6 chr9 5857083 5857431 -136414013 + L1MB5 LINE L1 4922 5282 -864 4161 177 7 45 chr9 5859321 5860184 -136411260 + L1MB5 LINE L1 5328 6157 -17 1395 265 84 25 chr9 5860797 5861364 -136410080 + L2 LINE L2 2712 3313 0 382 278 17 57 chr9 5861392 5861568 -136409876 - MIR SINE MIR -2 260 92 899 220 76 73 chr9 5861571 5861968 -136409476 + L1MC5 LINE L1 6827 7228 -733 784 294 54 21 chr9 5862010 5862417 -136409027 + L1MC5 LINE L1 7260 7630 -178 296 317 128 4 chr9 5862678 5862899 -136408545 - HAL1b LINE L1 -701 1651 400 324 284 92 37 chr9 5862989 5863098 -136408346 + L2 LINE L2 3158 3272 0 268 150 0 50 chr9 5863339 5863399 -136408045 + L2 LINE L2 1951 2007 -1307 1040 193 0 6 chr9 5863462 5863643 -136407801 - AluJb SINE Alu 0 312 133 390 142 83 24 chr9 5863643 5863812 -136407632 + (TA)n Simple_repeat Simple_repeat 2 180 0 343 80 94 25 chr9 5863841 5864068 -136407376 + (TA)n Simple_repeat Simple_repeat 1 242 0 335 144 56 25 chr9 5864103 5864263 -136407181 + (TATAA)n Simple_repeat Simple_repeat 5 169 0 31 68 0 0 chr9 5864263 5864322 -136407122 + AT_rich Low_complexity Low_complexity 1 59 0 321 86 36 64 chr9 5864324 5864464 -136406980 + (TTATA)n Simple_repeat Simple_repeat 5 140 0 279 93 0 0 chr9 5864478 5864521 -136406923 + (GA)n Simple_repeat Simple_repeat 1 43 0 506 171 207 18 chr9 5864543 5864654 -136406790 - AluJb SINE Alu -92 220 89 267 238 89 89 chr9 5865413 5865514 -136405930 + MER5B DNA MER1_type 74 174 -4 1336 194 184 45 chr9 5866405 5866778 -136404666 + LTR40c LTR ERVL 1 435 -30 2912 203 88 33 chr9 5866778 5867473 -136403971 + MER44D DNA MER2_type 1 605 0 1336 194 184 45 chr9 5867473 5867502 -136403942 + LTR40c LTR ERVL 435 459 -6 299 302 17 64 chr9 5867536 5867708 -136403736 + HERVL40 LTR ERVL 20 183 -5347 903 218 68 33 chr9 5867818 5868171 -136403273 + HERVL40 LTR ERVL 918 1353 -4177 1700 184 0 13 chr9 5868459 5868768 -136402676 - AluJo SINE Alu -1 311 7 292 247 82 112 chr9 5868796 5868966 -136402478 + HERVL40 LTR ERVL 1380 1544 -3986 1936 162 141 62 chr9 5869142 5869575 -136401869 - MLT1C LTR MaLR 0 467 1 525 227 61 45 chr9 5869575 5869707 -136401737 + HERVL40 LTR ERVL 2682 2815 -2715 1137 239 81 25 chr9 5869753 5870038 -136401406 + LTR40a LTR ERVL 218 518 -1 635 196 240 11 chr9 5870320 5870499 -136400945 - MIR SINE MIR -38 224 5 1468 171 132 48 chr9 5870736 5871030 -136400414 - MLT1D LTR MaLR -2 503 172 2095 121 27 0 chr9 5871030 5871327 -136400117 + AluSx SINE Alu 1 305 -7 1468 171 132 48 chr9 5871327 5871389 -136400055 - MLT1D LTR MaLR -333 172 117 394 278 79 0 chr9 5871888 5872014 -136399430 + MIR3 SINE MIR 50 185 -23 6025 116 47 21 chr9 5872257 5875111 -136396333 + SVA Other Other 19 1386 0 301 255 277 16 chr9 5878463 5878647 -136392797 + MIR SINE MIR 3 234 -28 187 268 0 0 chr9 5878619 5878660 -136392784 + L2 LINE L2 3211 3251 -21 * 633 225 98 140 chr9 5878670 5879070 -136392374 - LTR33 LTR ERVL -138 383 1 3170 39 0 0 chr9 5879079 5879439 -136392005 - L1PA5 LINE L1 0 6154 5795 2007 161 26 77 chr9 5880086 5880577 -136390867 - MER31B LTR ERV1 0 466 1 1115 289 82 17 chr9 5880673 5881137 -136390307 + LTR33 LTR ERVL 12 505 -16 211 281 0 0 chr9 5881375 5881432 -136390012 + (TATATG)n Simple_repeat Simple_repeat 6 62 0 257 223 36 0 chr9 5881566 5881676 -136389768 - L1MC3 LINE L1 -1139 6702 6571 238 232 29 14 chr9 5881626 5881695 -136389749 + L1MCa LINE L1 1995 2064 -4362 * 263 333 0 0 chr9 5881718 5881808 -136389636 + L1MC4 LINE L1 6614 6703 -1339 231 314 47 0 chr9 5881816 5881902 -136389542 - L1MC4 LINE L1 -1339 6703 6614 3296 145 41 23 chr9 5882451 5883015 -136388429 - L1MB7 LINE L1 -19 6165 5592 1077 219 23 0 chr9 5883074 5883289 -136388155 + MIR SINE MIR 9 228 -34 366 239 0 54 chr9 5883965 5884057 -136387387 + MER21B LTR ERV1 1 87 -776 1248 226 124 6 chr9 5884080 5884403 -136387041 + MER21B LTR ERV1 20 380 -483 4348 39 8 0 chr9 5884507 5885020 -136386424 - L1PA5 LINE L1 -384 5770 5254 3354 58 2 2 chr9 5885031 5885430 -136386014 + L1PA5 LINE L1 5755 6153 -1 241 176 27 0 chr9 5885982 5886056 -136385388 + (TA)n Simple_repeat Simple_repeat 2 77 0 521 311 102 22 chr9 5886073 5886674 -136384770 + L2 LINE L2 2458 3174 -139 269 257 112 73 chr9 5887885 5888064 -136383380 - MER5A DNA MER1_type 0 189 4 229 190 69 0 chr9 5888657 5888715 -136382729 - MIR SINE MIR -98 110 49 424 258 108 24 chr9 5888731 5888898 -136382546 - MER112 DNA MER1_type -9 251 71 424 88 206 15 chr9 5889396 5889464 -136381980 + AluS SINE Alu 4 84 -228 561 287 89 3 chr9 5891039 5891321 -136380123 - L1ME4a LINE L1 -267 5854 5549 803 146 0 8 chr9 5891617 5891747 -136379697 - FLAM_C SINE Alu -8 135 7 2386 80 30 0 chr9 5891788 5892089 -136379355 - AluSx SINE Alu -2 310 1 38 39 0 0 chr9 5892766 5892818 -136378626 + AT_rich Low_complexity Low_complexity 1 52 0 21 0 0 0 chr9 5893101 5893122 -136378322 + AT_rich Low_complexity Low_complexity 1 21 0 281 289 185 33 chr9 5893158 5893521 -136377923 + L1ME4a LINE L1 5581 5998 -123 945 188 16 36 chr9 5893539 5893731 -136377713 - MER20 DNA MER1_type 0 219 32 22 70 0 0 chr9 5893788 5893831 -136377613 + AT_rich Low_complexity Low_complexity 1 43 0 635 284 105 57 chr9 5894293 5894817 -136376627 - L1MC/D LINE L1 -2005 5803 5255 412 304 24 16 chr9 5895012 5895137 -136376307 + L2 LINE L2 3183 3308 -5 182 61 0 30 chr9 5897307 5897340 -136374104 + (TTCA)n Simple_repeat Simple_repeat 1 32 0 271 268 143 62 chr9 5898001 5898210 -136373234 - L3 LINE CR1 -7 1570 1345 572 223 4 128 chr9 5899654 5899919 -136371525 + L2 LINE L2 3082 3313 0 236 321 0 25 chr9 5900115 5900196 -136371248 - MIR SINE MIR -24 238 160 252 238 50 0 chr9 5900197 5900277 -136371167 + HsTC2 DNA Tc2 3 86 -1812 664 253 13 13 chr9 5900295 5900445 -136370999 - MIR SINE MIR -111 151 2 318 269 86 6 chr9 5900548 5900658 -136370786 - Charlie7 DNA MER1_type -4 2608 2477 375 200 0 12 chr9 5900658 5900738 -136370706 - MER116 DNA Mariner -1 79 1 318 269 86 6 chr9 5900738 5900802 -136370642 - Charlie7 DNA MER1_type -135 2477 2420 * 1067 223 136 14 chr9 5900798 5901143 -136370301 - Charlie7 DNA MER1_type -1891 721 335 1173 176 41 16 chr9 5901666 5901910 -136369534 + L1MC3 LINE L1 7526 7775 -10 534 96 0 24 chr9 5902250 5902333 -136369111 - L1PB4 LINE L1 -8 6148 6068 297 263 79 0 chr9 5902923 5902999 -136368445 + L2 LINE L2 3191 3272 0 376 239 123 29 chr9 5903476 5903614 -136367830 + MIR SINE MIR 80 230 -32 379 232 35 84 chr9 5904017 5904159 -136367285 + MIR SINE MIR 72 206 -56 2261 117 0 0 chr9 5904577 5904876 -136366568 + AluSx SINE Alu 1 299 -13 251 327 58 10 chr9 5905002 5905106 -136366338 - MIR SINE MIR -153 109 1 341 279 59 82 chr9 5906892 5906975 -136364469 - MIR SINE MIR -27 235 152 225 0 0 0 chr9 5906975 5907000 -136364444 + (GA)n Simple_repeat Simple_repeat 2 26 0 341 279 59 82 chr9 5907000 5907164 -136364280 - MIR SINE MIR -110 152 2 300 216 0 0 chr9 5907398 5907449 -136363995 + MER81 DNA DNA 3 53 -61 364 279 121 7 chr9 5908437 5908577 -136362867 - MIR SINE MIR -58 204 49 465 326 56 25 chr9 5908622 5908818 -136362626 - L2 LINE L2 0 3272 3071 24 32 0 0 chr9 5910223 5910254 -136361190 + AT_rich Low_complexity Low_complexity 1 31 0 2232 110 3 0 chr9 5910962 5911262 -136360182 - AluSq SINE Alu -12 301 1 23 33 0 0 chr9 5911543 5911573 -136359871 + AT_rich Low_complexity Low_complexity 1 30 0 41817 66 3 4 chr9 5911587 5917739 -136353705 - L1PA5 LINE L1 -2 6152 3 3580 125 8 43 chr9 5917751 5917943 -136353501 - L1MA6 LINE L1 -22 6278 6081 2110 138 50 56 chr9 5917943 5918320 -136353124 - THE1C LTR MaLR 0 375 1 3580 125 8 43 chr9 5918320 5918622 -136352822 - L1MA6 LINE L1 -219 6081 5770 405 0 0 0 chr9 5918622 5918667 -136352777 + (TG)n Simple_repeat Simple_repeat 2 46 0 3580 125 8 43 chr9 5918667 5918682 -136352762 - L1MA6 LINE L1 -530 5770 5756 710 153 89 24 chr9 5918682 5918806 -136352638 - FLAM_A SINE Alu -1 132 1 3580 125 8 43 chr9 5918806 5918919 -136352525 - L1MA6 LINE L1 -544 5756 5676 205 106 21 21 chr9 5918925 5918972 -136352472 + (TTTA)n Simple_repeat Simple_repeat 2 48 0 45 45 0 0 chr9 5919680 5919746 -136351698 + AT_rich Low_complexity Low_complexity 1 66 0 195 238 188 38 chr9 5920252 5920332 -136351112 - L2 LINE L2 -12 3260 3169 874 281 42 4 chr9 5920674 5920912 -136350532 - MIR SINE MIR -13 249 3 1883 249 55 21 chr9 5921073 5921976 -136349468 - L1ME LINE L1 -438 5724 4787 1930 154 0 0 chr9 5922197 5922495 -136348949 + AluJb SINE Alu 1 298 -14 1390 112 0 39 chr9 5922701 5922907 -136348537 - AluSg/x SINE Alu -10 300 103 361 268 48 26 chr9 5923727 5923933 -136347511 - MLT1L LTR MaLR -363 252 5 194 311 98 59 chr9 5923950 5924204 -136347240 + L2 LINE L2 2603 2866 -448 332 176 0 0 chr9 5924218 5924269 -136347175 - MER58A DNA MER1_type -33 191 141 699 77 30 179 chr9 5924288 5924386 -136347058 + Tigger7 DNA MER2_type 2232 2296 -195 861 137 23 8 chr9 5924386 5924517 -136346927 - FLAM_C SINE Alu 0 133 1 699 77 30 179 chr9 5924517 5924586 -136346858 + Tigger7 DNA MER2_type 2296 2374 -117 814 123 0 16 chr9 5924669 5924791 -136346653 + Tigger7 DNA MER2_type 2368 2487 0 675 248 14 0 chr9 5924791 5924932 -136346512 - MER58A DNA MER1_type 0 143 1 690 296 94 14 chr9 5925607 5925830 -136345614 + MIR SINE MIR 15 255 -7 1083 267 49 21 chr9 5925919 5926207 -136345237 - MLT1J1 LTR MaLR -128 318 23 667 321 109 44 chr9 5926596 5927120 -136344324 - L2 LINE L2 0 3313 2728 2368 97 0 0 chr9 5927120 5927429 -136344015 - AluSc SINE Alu 0 309 1 667 321 109 44 chr9 5927429 5927576 -136343868 - L2 LINE L2 -585 2728 2592 841 285 34 4 chr9 5929292 5929527 -136341917 + MIR SINE MIR 8 249 -13 548 235 53 82 chr9 5930391 5930634 -136340810 + L1ME4a LINE L1 5631 5866 -255 466 17 0 34 chr9 5930695 5930754 -136340690 + AluY SINE Alu 242 298 -13 1845 51 0 0 chr9 5930758 5930972 -136340472 + L1PA5 LINE L1 5933 6146 -8 22 0 0 0 chr9 5930972 5930994 -136340450 + AT_rich Low_complexity Low_complexity 1 22 0 815 272 40 36 chr9 5931328 5931578 -136339866 - MIR SINE MIR -4 258 8 260 200 0 20 chr9 5931758 5931808 -136339636 + MIR SINE MIR 101 149 -59 331 273 147 47 chr9 5932018 5932168 -136339276 + L2 LINE L2 3106 3270 -2 2140 130 19 3 chr9 5932422 5932729 -136338715 - AluJb SINE Alu 0 312 1 348 267 147 47 chr9 5932949 5933099 -136338345 - L2 LINE L2 -2 3270 3106 517 291 32 6 chr9 5933394 5933552 -136337892 - MER5B DNA MER1_type -16 162 1 7801 45 7 0 chr9 5934393 5935728 -136335716 - L1PA4 LINE L1 0 6155 4817 2871 165 49 27 chr9 5935912 5935968 -136335476 - L1MB8 LINE L1 0 6178 6125 2241 147 6 32 chr9 5935968 5936314 -136335130 + MER1B DNA MER1_type 1 337 0 2871 165 49 27 chr9 5936314 5936844 -136334600 - L1MB8 LINE L1 -53 6125 5579 211 194 0 0 chr9 5937418 5937454 -136333990 + CT-rich Low_complexity Low_complexity 5 40 0 1025 181 0 0 chr9 5937549 5937715 -136333729 - FRAM SINE Alu -11 165 1 1444 114 14 5 chr9 5937726 5937946 -136333498 - L1MA5 LINE L1 -5 6295 6074 2320 91 0 3 chr9 5938442 5938740 -136332704 - AluSx SINE Alu -15 297 1 286 235 12 35 chr9 5939023 5939108 -136332336 - MIR SINE MIR -7 255 173 310 193 12 12 chr9 5939109 5939192 -136332252 + (CATTA)n Simple_repeat Simple_repeat 2 84 0 229 369 0 0 chr9 5939244 5939328 -136332116 + MIR SINE MIR 61 144 -118 549 176 0 0 chr9 5939549 5939634 -136331810 + AluJb SINE Alu 1 85 -227 2208 110 0 3 chr9 5939634 5939935 -136331509 - LTR46 LTR ERV1 0 460 161 1963 162 48 14 chr9 5939938 5940296 -136331148 - LTR46-int LTR ERV1 -3 6982 6613 2765 88 0 1 chr9 5940412 5940820 -136330624 + LTR46 LTR ERV1 1 460 0 1293 186 0 4 chr9 5940822 5941048 -136330396 + AluJb SINE Alu 83 307 -5 16887 172 22 17 chr9 5941249 5947286 -136324158 + L1PA12 LINE L1 1 6115 -704 2351 82 0 3 chr9 5947286 5947579 -136323865 + AluY SINE Alu 1 292 -19 16887 172 22 17 chr9 5947579 5948233 -136323211 + L1PA12 LINE L1 6115 6764 -55 227 200 0 0 chr9 5948663 5948703 -136322741 - MLT1K LTR MaLR -359 229 190 183 308 223 0 chr9 5949186 5949316 -136322128 + MIR SINE MIR 34 192 -70 999 208 98 4 chr9 5949340 5949585 -136321859 + MLT1C LTR MaLR 9 276 -191 2540 161 9 0 chr9 5949785 5950220 -136321224 + L1P LINE L1 3951 4389 -1757 269 173 19 0 chr9 5951418 5951470 -136319974 + L3 LINE CR1 1518 1570 -7 328 308 38 53 chr9 5951613 5951746 -136319698 + L2 LINE L2 3142 3272 0 253 349 77 12 chr9 5952977 5953146 -136318298 + L2 LINE L2 2872 3051 -221 227 263 18 0 chr9 5953538 5953595 -136317849 - Charlie8 DNA MER1_type -999 1418 1361 283 278 151 56 chr9 5953939 5954065 -136317379 + L2 LINE L2 3134 3271 -1 967 162 5 89 chr9 5954367 5954558 -136316886 + FAM SINE Alu 1 175 0 257 269 26 13 chr9 5954656 5954734 -136316710 - L2 LINE L2 -209 3063 2985 4666 190 99 30 chr9 5955148 5955415 -136316029 - MER52A LTR ERV1 -518 1237 990 2338 97 3 3 chr9 5955415 5955725 -136315719 + AluSg SINE Alu 1 310 0 4666 190 99 30 chr9 5955725 5955815 -136315629 - MER52A LTR ERV1 -765 990 908 2298 91 10 3 chr9 5955815 5956123 -136315321 - AluSq SINE Alu -3 310 1 4666 190 99 30 chr9 5956123 5956838 -136314606 - MER52A LTR ERV1 -847 908 1 353 100 20 0 chr9 5956840 5956890 -136314554 + AluJ/FRAM SINE Alu 225 275 -27 582 314 91 19 chr9 5957028 5957292 -136314152 - MER115 DNA AcHobo -390 303 21 1337 246 87 27 chr9 5957294 5957697 -136313747 - L2 LINE L2 -519 2795 2369 358 345 54 14 chr9 5957866 5958014 -136313430 - MIR SINE MIR -96 166 13 1616 261 183 30 chr9 5958401 5958695 -136312749 + L2 LINE L2 1673 1921 -1393 3291 149 29 23 chr9 5958695 5959250 -136312194 - MER74A LTR ERVL 0 558 1 1616 261 183 30 chr9 5959250 5959698 -136311746 + L2 LINE L2 1921 2529 -785 2571 197 8 126 chr9 5959698 5960571 -136310873 + L1MB7 LINE L1 4481 5250 -896 * 3377 161 7 11 chr9 5960562 5961132 -136310312 + L1MB7 LINE L1 5567 6134 -50 228 187 0 93 chr9 5961139 5961214 -136310230 + L1MA10 LINE L1 6263 6330 -4 27 49 0 0 chr9 5961214 5961255 -136310189 + AT_rich Low_complexity Low_complexity 1 41 0 386 262 91 77 chr9 5961265 5961486 -136309958 + L2 LINE L2 2548 2771 -543 543 264 167 17 chr9 5963832 5964006 -136307438 - MIR SINE MIR -11 251 52 28 29 0 0 chr9 5964557 5964592 -136306852 + AT_rich Low_complexity Low_complexity 1 35 0 22 0 0 0 chr9 5964812 5964834 -136306610 + AT_rich Low_complexity Low_complexity 1 22 0 2103 119 16 7 chr9 5964839 5965142 -136306302 + AluSx SINE Alu 1 306 -6 22 0 0 0 chr9 5965275 5965297 -136306147 + AT_rich Low_complexity Low_complexity 1 22 0 25 0 0 0 chr9 5965415 5965440 -136306004 + AT_rich Low_complexity Low_complexity 1 25 0 2337 84 0 0 chr9 5965540 5965837 -136305607 + AluSg SINE Alu 1 297 -13 25 31 0 0 chr9 5965961 5965993 -136305451 + AT_rich Low_complexity Low_complexity 1 32 0 252 175 53 18 chr9 5966074 5966131 -136305313 - L1ME3A LINE L1 -95 6075 6017 1597 188 10 10 chr9 5966223 5966511 -136304933 - AluJo SINE Alu -24 288 1 252 219 146 57 chr9 5966597 5966720 -136304724 - L1ME3A LINE L1 -268 5853 5720 2699 196 69 13 chr9 5966943 5967064 -136304380 - L1ME1 LINE L1 -187 5979 5866 180 0 0 0 chr9 5967064 5967084 -136304360 + (CAAA)n Simple_repeat Simple_repeat 1 20 0 2699 196 69 13 chr9 5967084 5967594 -136303850 - L1ME1 LINE L1 -300 5866 5458 2186 123 0 3 chr9 5967594 5967903 -136303541 - AluSx SINE Alu -4 308 1 2699 196 69 13 chr9 5967903 5968002 -136303442 - L1ME1 LINE L1 -708 5458 5366 221 58 77 0 chr9 5968010 5968062 -136303382 + (TA)n Simple_repeat Simple_repeat 1 56 0 1836 167 3 13 chr9 5968078 5968378 -136303066 - AluJo SINE Alu -15 297 1 2161 190 40 77 chr9 5968387 5968520 -136302924 - L1ME1 LINE L1 -757 5389 5253 1694 157 25 0 chr9 5968520 5968794 -136302650 - AluSx SINE Alu -23 289 9 2161 190 40 77 chr9 5968794 5969307 -136302137 - L1ME1 LINE L1 -893 5253 4767 671 268 93 0 chr9 5970360 5970554 -136300890 + MIR SINE MIR 49 260 -2 411 224 299 0 chr9 5970603 5970737 -136300707 - MER5A DNA MER1_type -6 183 10 510 277 40 40 chr9 5970788 5970965 -136300479 - MER5B DNA MER1_type -1 177 1 215 308 192 42 chr9 5972284 5972404 -136299040 - L2 LINE L2 -2 3270 3133 581 316 66 20 chr9 5972590 5972834 -136298610 - MIR SINE MIR -6 256 2 233 73 0 24 chr9 5972884 5972925 -136298519 + (TGAA)n Simple_repeat Simple_repeat 1 40 0 985 251 112 27 chr9 5973123 5973497 -136297947 + MER113 DNA MER1_type? 116 521 0 302 304 143 54 chr9 5973497 5973721 -136297723 + MIR SINE MIR 13 256 -6 555 240 85 25 chr9 5973787 5973987 -136297457 + MIR SINE MIR 51 262 0 532 246 41 86 chr9 5975191 5975459 -136295985 - MER112 DNA MER1_type 0 256 1 248 290 0 0 chr9 5975460 5975529 -136295915 - MIR3 SINE MIR -49 159 91 518 308 12 12 chr9 5975940 5976109 -136295335 + MIR SINE MIR 89 257 -5 804 273 144 11 chr9 5976511 5976789 -136294655 + Charlie2 DNA MER1_type 4 318 -2464 2214 210 101 30 chr9 5976801 5977251 -136294193 + Charlie2 DNA MER1_type 1871 2388 -474 3527 39 17 0 chr9 5977251 5977657 -136293787 + L1PA4 LINE L1 5743 6155 0 2214 210 101 30 chr9 5977657 5977897 -136293547 + Charlie2 DNA MER1_type 2388 2610 -252 2521 52 0 10 chr9 5978175 5978485 -136292959 + AluY SINE Alu 1 307 -4 1264 101 48 0 chr9 5978614 5978802 -136292642 - L1MA5A LINE L1 -3 6294 6098 419 265 70 22 chr9 5978806 5979036 -136292408 + Charlie2 DNA MER1_type 2606 2846 -16 12851 165 27 18 chr9 5979625 5983027 -136288417 + L1PB1 LINE L1 2598 6032 -119 2500 69 0 0 chr9 5983029 5983332 -136288112 + AluY SINE Alu 1 303 -8 22 56 0 0 chr9 5983580 5983616 -136287828 + AT_rich Low_complexity Low_complexity 1 36 0 255 308 59 18 chr9 5983706 5983875 -136287569 + L3 LINE CR1 270 445 -1132 1192 266 110 17 chr9 5983906 5984379 -136287065 - LTR33A LTR ERVL -5 518 2 209 285 76 101 chr9 5984402 5984560 -136286884 + L3 LINE CR1 473 626 -951 411 358 55 5 chr9 5984655 5984873 -136286571 + L3 LINE CR1 1044 1272 -305 288 275 290 15 chr9 5984876 5985076 -136286368 - MIR SINE MIR 0 262 8 308 312 7 78 chr9 5985108 5985262 -136286182 + L3 LINE CR1 1326 1468 -109 1157 208 60 18 chr9 5985288 5985624 -136285820 + L1M4 LINE L1 2368 2717 -3429 229 233 50 0 chr9 5986960 5987020 -136284424 - L1ME LINE L1 -536 5585 5523 3360 154 64 43 chr9 5987341 5987426 -136284018 - L1MA7 LINE L1 -1 6290 6208 2327 103 7 3 chr9 5987426 5987736 -136283708 + AluSq SINE Alu 1 311 -2 3360 154 64 43 chr9 5987736 5988370 -136283074 - L1MA7 LINE L1 -83 6208 5556 219 149 0 64 chr9 5988441 5988488 -136282956 + (TG)n Simple_repeat Simple_repeat 2 45 0 439 348 49 18 chr9 5988774 5988998 -136282446 + MIR SINE MIR 32 262 0 1714 236 113 11 chr9 5989403 5989874 -136281570 - LTR33 LTR ERVL -2 519 1 2122 199 44 58 chr9 5990182 5990471 -136280973 - MLT1D LTR MaLR -7 498 217 2235 109 3 0 chr9 5990471 5990764 -136280680 - AluSx SINE Alu -18 294 1 2122 199 44 58 chr9 5990764 5990976 -136280468 - MLT1D LTR MaLR -288 217 4 927 313 67 46 chr9 5991729 5992253 -136279191 - ERVL LTR ERVL -420 5344 4810 892 178 5 49 chr9 5992715 5992900 -136278544 + AluJo SINE Alu 123 299 -13 192 182 0 45 chr9 5993968 5994012 -136277432 + MIR SINE MIR 213 254 -8 591 286 45 15 chr9 5994560 5994759 -136276685 + MIR SINE MIR 13 217 -45 2218 108 0 7 chr9 5994904 5995200 -136276244 + AluSq SINE Alu 1 294 -19 650 261 153 47 chr9 5995272 5995698 -136275746 - MLT1J LTR MaLR -10 501 31 434 323 12 24 chr9 5996215 5996382 -136275062 + MIR3 SINE MIR 37 201 -7 247 298 0 0 chr9 5996949 5997006 -136274438 + polypurine Low_complexity Low_complexity 1 57 0 216 67 0 0 chr9 5997023 5997053 -136274391 + (TGGA)n Simple_repeat Simple_repeat 3 32 0 879 264 65 0 chr9 5997070 5997286 -136274158 + MIR SINE MIR 13 242 -20 257 340 11 0 chr9 5998553 5998647 -136272797 + GA-rich Low_complexity Low_complexity 2 96 0 264 357 37 1 chr9 5999221 5999349 -136272095 + MIR SINE MIR 17 148 -60 357 364 137 25 chr9 5999387 5999825 -136271619 + L2 LINE L2 2564 3055 -217 365 371 0 0 chr9 6000744 6000860 -136270584 + L2 LINE L2 3137 3252 -20 714 173 173 43 chr9 6000904 6001089 -136270355 - MER3 DNA MER1_type 0 209 1 356 270 162 14 chr9 6001091 6001268 -136270176 - MIR SINE MIR -48 214 16 185 143 57 0 chr9 6001467 6001502 -136269942 - MER5C DNA MER1_type 0 324 288 * 278 224 90 0 chr9 6001500 6001567 -136269877 - MER5C DNA MER1_type -249 75 3 3229 102 7 7 chr9 6001978 6002421 -136269023 + L1PB3 LINE L1 5712 6154 0 1989 151 16 6 chr9 6003507 6003824 -136267620 - MLT2C1 LTR ERVL -77 320 1 243 270 17 70 chr9 6004542 6004657 -136266787 + L2 LINE L2 2893 3001 -271 646 246 33 74 chr9 6004699 6004943 -136266501 - MIR SINE MIR -26 236 3 1872 150 10 14 chr9 6004962 6005255 -136266189 - AluJo SINE Alu -20 292 1 23 0 0 0 chr9 6005508 6005531 -136265913 + AT_rich Low_complexity Low_complexity 1 23 0 23 54 0 0 chr9 6005564 6005601 -136265843 + AT_rich Low_complexity Low_complexity 1 37 0 26 64 0 0 chr9 6005682 6005729 -136265715 + AT_rich Low_complexity Low_complexity 1 47 0 1573 248 28 18 chr9 6006107 6006494 -136264950 + MLT1I LTR MaLR 11 401 -8 313 316 70 51 chr9 6006534 6006847 -136264597 + L1ME4a LINE L1 5803 6121 0 362 299 0 0 chr9 6007051 6007138 -136264306 - MIR SINE MIR -95 113 27 279 298 0 12 chr9 6007332 6007416 -136264028 - MIR3 SINE MIR -35 173 91 228 206 0 130 chr9 6007475 6007567 -136263877 - L2 LINE L2 0 3272 3193 2374 130 12 35 chr9 6008001 6008346 -136263098 + MER1B DNA MER1_type 1 337 0 1375 276 106 15 chr9 6008939 6009413 -136262031 - LTR33 LTR ERVL -4 517 1 212 250 0 18 chr9 6010611 6010667 -136260777 + MIR SINE MIR 102 156 -106 585 258 57 5 chr9 6011551 6011750 -136259694 - MIR SINE MIR -2 260 53 5277 55 40 5 chr9 6011865 6012518 -136258926 + L1PA8 LINE L1 5486 6161 -11 228 365 94 10 chr9 6012568 6012664 -136258780 + MIR SINE MIR 28 131 -131 2209 132 0 0 chr9 6012678 6012982 -136258462 + AluSx SINE Alu 1 304 -8 231 61 0 0 chr9 6012998 6013031 -136258413 + (TA)n Simple_repeat Simple_repeat 1 33 0 36 0 0 0 chr9 6013057 6013093 -136258351 + AT_rich Low_complexity Low_complexity 1 36 0 2202 121 0 19 chr9 6013095 6013409 -136258035 + AluSg SINE Alu 1 308 -2 2341 86 3 10 chr9 6013609 6013911 -136257533 - AluSp SINE Alu -13 300 1 2358 87 3 0 chr9 6014212 6014511 -136256933 + AluSp SINE Alu 1 300 -13 398 238 0 10 chr9 6014562 6014663 -136256781 - L1ME LINE L1 -298 5823 5724 1626 230 49 45 chr9 6014685 6015057 -136256387 + LTR33 LTR ERVL 1 377 -144 279 114 0 0 chr9 6015057 6015101 -136256343 + (CA)n Simple_repeat Simple_repeat 2 45 0 1626 230 49 45 chr9 6015101 6015220 -136256224 + LTR33 LTR ERVL 377 494 -27 373 290 20 0 chr9 6015263 6015363 -136256081 - L1ME LINE L1 -461 5660 5559 263 272 29 48 chr9 6015616 6015719 -136255725 + MIR SINE MIR 104 204 -58 1007 156 0 0 chr9 6015968 6016150 -136255294 - AluJb SINE Alu 0 323 142 2193 119 3 0 chr9 6016228 6016530 -136254914 - AluSp SINE Alu -10 303 1 642 235 138 113 chr9 6016990 6017424 -136254020 - MLT1H LTR MaLR 0 549 105 422 324 113 35 chr9 6017836 6018207 -136253237 - ERVL LTR ERVL -5067 697 298 415 249 79 42 chr9 6018653 6018818 -136252626 - LTR50 LTR ERVL -617 178 8 2341 71 0 0 chr9 6019047 6019378 -136252066 - AluY SINE Alu 0 333 3 682 301 160 33 chr9 6019417 6019843 -136251601 - MLT1K LTR MaLR -19 569 90 589 204 84 36 chr9 6020202 6020293 -136251151 - MIR SINE MIR -27 235 150 2560 107 120 5 chr9 6020293 6020677 -136250767 - MSTA LTR MaLR 0 428 1 589 204 84 36 chr9 6020677 6020752 -136250692 - MIR SINE MIR -112 150 61 266 346 58 6 chr9 6020824 6020980 -136250464 + L2 LINE L2 3146 3309 -4 4514 70 23 0 chr9 6021443 6022004 -136249440 + L1PA11 LINE L1 5596 6169 -5 1872 103 20 0 chr9 6023514 6023767 -136247677 + AluSx SINE Alu 34 291 -21 363 262 8 40 chr9 6023783 6023909 -136247535 - MIR SINE MIR -50 212 91 1996 164 0 0 chr9 6023946 6024245 -136247199 + AluJb SINE Alu 1 299 -13 225 283 61 30 chr9 6024280 6024379 -136247065 + L3 LINE CR1 398 499 -1078 828 297 183 73 chr9 6024437 6024555 -136246889 + L3 LINE CR1 647 751 -826 1980 162 0 0 chr9 6024555 6024857 -136246587 + AluJb SINE Alu 8 309 -3 828 297 183 73 chr9 6024857 6025084 -136246360 + L3 LINE CR1 751 952 -625 1931 155 3 3 chr9 6025084 6025381 -136246063 + AluJb SINE Alu 1 297 -15 828 297 183 73 chr9 6025381 6025870 -136245574 + L3 LINE CR1 952 1574 -3 300 261 136 11 chr9 6025877 6025965 -136245479 + MIR3 SINE MIR 99 197 -11 451 270 117 7 chr9 6027506 6027643 -136243801 + MIR SINE MIR 32 183 -79 2079 138 3 0 chr9 6027688 6027986 -136243458 - AluSx SINE Alu -13 299 1 21 71 0 0 chr9 6028367 6028409 -136243035 + AT_rich Low_complexity Low_complexity 1 42 0 213 59 0 29 chr9 6028445 6028479 -136242965 - L2 LINE L2 0 3272 3240 372 318 68 27 chr9 6029211 6029431 -136242013 - MIR SINE MIR -6 256 28 883 241 117 14 chr9 6030047 6030338 -136241106 - MER5C DNA MER1_type -2 322 2 2426 91 3 0 chr9 6030350 6030657 -136240787 - AluSx SINE Alu -4 308 1 192 152 0 0 chr9 6030760 6030793 -136240651 + T-rich Low_complexity Low_complexity 1 33 0 691 79 0 11 chr9 6031080 6031169 -136240275 - AluJb SINE Alu -194 118 31 220 196 0 39 chr9 6031934 6031985 -136239459 + L2 LINE L2 3262 3310 -3 382 225 200 8 chr9 6032515 6032635 -136238809 - MER5A DNA MER1_type 0 189 47 1016 101 51 6 chr9 6032635 6032793 -136238651 + MSTB LTR MaLR 1 165 -261 1750 193 90 69 chr9 6032801 6033310 -136238134 + MER21B LTR ERV1 299 818 -45 968 145 0 0 chr9 6033402 6033533 -136237911 - FLAM_C SINE Alu -2 131 1 1680 151 33 4 chr9 6034346 6034617 -136236827 + AluJb SINE Alu 1 279 -33 1015 198 68 34 chr9 6035640 6035877 -136235567 - MIR SINE MIR 0 262 18 343 298 89 0 chr9 6036494 6036618 -136234826 - MIR3 SINE MIR -4 204 70 291 274 27 0 chr9 6037461 6037534 -136233910 + L2 LINE L2 3184 3258 -14 231 163 20 20 chr9 6037535 6037584 -136233860 + GA-rich Low_complexity Low_complexity 2 50 0 597 262 115 0 chr9 6038198 6038381 -136233063 - MIR SINE MIR -52 210 7 266 236 167 0 chr9 6038550 6038622 -136232822 + MIR SINE MIR 63 146 -116 589 248 35 0 chr9 6038623 6038768 -136232676 + L1MC4a LINE L1 5674 5823 -1985 2352 137 2 68 chr9 6038768 6039192 -136232252 + MER61E LTR ERV1 54 449 -120 479 221 50 61 chr9 6039201 6039382 -136232062 + L1MC4a LINE L1 5812 5990 -1818 1287 265 38 19 chr9 6039451 6039902 -136231542 - LTR33 LTR ERVL -1 520 1 1755 118 49 26 chr9 6039973 6040279 -136231165 + AluSq SINE Alu 1 313 0 2054 97 18 4 chr9 6040618 6040933 -136230511 - AluSx SINE Alu 0 319 1 359 277 161 19 chr9 6041140 6041295 -136230149 - MER5B DNA MER1_type 0 178 2 356 299 90 57 chr9 6041343 6041587 -136229857 + L2 LINE L2 2839 3090 -182 934 284 56 40 chr9 6041706 6042210 -136229234 + L1ME4a LINE L1 5506 6017 -104 506 311 0 8 chr9 6042313 6042435 -136229009 - MER91A DNA MER1_type 0 196 76 409 303 55 0 chr9 6042463 6042608 -136228836 - L1ME3A LINE L1 -230 5940 5788 2201 283 82 39 chr9 6043243 6044962 -136226482 + L1MEc LINE L1 2141 3785 -2430 1850 167 3 10 chr9 6044962 6045290 -136226154 + AluJb SINE Alu 1 312 0 2201 283 82 39 chr9 6045290 6045301 -136226143 + L1MEc LINE L1 3785 3794 -2421 2151 122 0 0 chr9 6045301 6045614 -136225830 + AluSq SINE Alu 1 313 0 2201 283 82 39 chr9 6045614 6045689 -136225755 + L1MEc LINE L1 3794 3982 -2233 1221 266 81 75 chr9 6045709 6045932 -136225512 + L1MEc LINE L1 4136 4356 -1859 2162 107 7 3 chr9 6045932 6046223 -136225221 + AluSp SINE Alu 1 292 -21 1221 266 81 75 chr9 6046223 6046349 -136225095 + L1MEc LINE L1 4356 4480 -1735 2692 106 19 6 chr9 6046349 6046708 -136224736 + THE1B LTR MaLR 1 364 0 1221 266 81 75 chr9 6046708 6047525 -136223919 + L1MEc LINE L1 4480 5311 -904 558 270 92 25 chr9 6047529 6047725 -136223719 + MER63A DNA MER1_type 2 210 0 784 250 72 51 chr9 6047725 6047971 -136223473 + L1MEc LINE L1 5305 5544 -687 835 191 0 22 chr9 6047971 6048107 -136223337 + FLAM_A SINE Alu 1 133 0 784 250 72 51 chr9 6048107 6048364 -136223080 + L1MEc LINE L1 5544 5817 -414 1119 240 193 14 chr9 6048365 6048782 -136222662 - MLT2F LTR ERVL -3 660 93 258 121 172 35 chr9 6048788 6048846 -136222598 - MIR3 SINE MIR -46 162 97 30 69 0 0 chr9 6049673 6049731 -136221713 + AT_rich Low_complexity Low_complexity 1 58 0 32 0 0 0 chr9 6049891 6049923 -136221521 + AT_rich Low_complexity Low_complexity 1 32 0 381 213 12 0 chr9 6050340 6050420 -136221024 - LTR16A LTR ERVL -5 445 365 1989 89 4 0 chr9 6050639 6050896 -136220548 - L1PB1 LINE L1 -1 6150 5893 264 295 11 32 chr9 6051865 6051960 -136219484 - MIR SINE MIR -2 260 168 205 298 0 0 chr9 6051992 6052039 -136219405 - MIR SINE MIR -196 66 20 1537 249 66 10 chr9 6052155 6052549 -136218895 + LTR16C LTR ERVL 76 491 0 2322 102 0 0 chr9 6053050 6053343 -136218101 - AluSg SINE Alu -17 293 1 1787 120 69 4 chr9 6053528 6053804 -136217640 + AluSx SINE Alu 1 294 -18 2050 116 31 7 chr9 6054254 6054546 -136216898 - AluSx SINE Alu -13 299 1 203 86 0 29 chr9 6055152 6055187 -136216257 + (GAAA)n Simple_repeat Simple_repeat 3 36 0 787 219 125 5 chr9 6055620 6055812 -136215632 + MIR SINE MIR 48 262 0 407 304 28 66 chr9 6056317 6056498 -136214946 - MER5A DNA MER1_type -9 180 7 22 0 0 0 chr9 6056590 6056612 -136214832 + AT_rich Low_complexity Low_complexity 1 22 0 4399 117 26 48 chr9 6057077 6057811 -136213633 + L1MB2 LINE L1 5343 6060 -111 26 50 0 0 chr9 6058404 6058444 -136213000 + AT_rich Low_complexity Low_complexity 1 40 0 6131 133 60 34 chr9 6058493 6059103 -136212341 - Tigger3b DNA MER2_type -1797 1231 639 2363 90 0 0 chr9 6059103 6059404 -136212040 - AluSg SINE Alu -9 301 1 2055 123 3 29 chr9 6059406 6059716 -136211728 - AluSx SINE Alu -10 302 1 6131 133 60 34 chr9 6059716 6059858 -136211586 - Tigger3b DNA MER2_type -2389 639 502 1725 158 10 17 chr9 6059858 6060150 -136211294 - AluJo SINE Alu -14 298 9 6131 133 60 34 chr9 6060150 6060524 -136210920 - Tigger3b DNA MER2_type -2526 502 71 881 145 7 7 chr9 6060630 6060775 -136210669 - Tigger1 DNA MER2_type -185 2233 2089 2350 85 0 0 chr9 6060781 6061076 -136210368 - AluSc SINE Alu -14 295 1 1415 133 4 112 chr9 6061076 6061354 -136210090 - Tigger1 DNA MER2_type -864 1554 1307 9176 142 10 23 chr9 6061391 6062186 -136209258 - Tigger1 DNA MER2_type -921 1497 730 1660 174 27 20 chr9 6062186 6062480 -136208964 - AluJo SINE Alu -14 298 3 9176 142 10 23 chr9 6062480 6063147 -136208297 - Tigger1 DNA MER2_type -1688 730 55 1630 176 35 3 chr9 6063280 6063569 -136207875 - AluJb SINE Alu -14 298 1 2215 126 7 0 chr9 6063730 6064040 -136207404 + AluSx SINE Alu 1 312 0 380 253 55 0 chr9 6064191 6064282 -136207162 - Tigger1 DNA MER2_type -2254 164 69 880 104 0 0 chr9 6064284 6064399 -136207045 - AluSg/x SINE Alu -13 297 183 2367 95 3 0 chr9 6064523 6064828 -136206616 + AluSp SINE Alu 1 306 -7 2132 101 10 3 chr9 6065676 6065972 -136205472 - AluSx SINE Alu -14 298 1 23 68 0 0 chr9 6066918 6066962 -136204482 + GC_rich Low_complexity Low_complexity 1 44 0 227 189 94 0 chr9 6067138 6067191 -136204253 - L1ME LINE L1 -521 5600 5543 345 185 46 83 chr9 6067206 6067314 -136204130 - L1ME LINE L1 -688 5468 5363 359 264 99 40 chr9 6068145 6068309 -136203135 + L1ME4a LINE L1 5770 5923 -198 2330 63 0 7 chr9 6068309 6068626 -136202818 + AluY SINE Alu 1 315 0 2261 91 3 19 chr9 6068635 6068942 -136202502 + AluSx SINE Alu 1 302 -10 194 62 31 0 chr9 6068949 6068981 -136202463 + (TAAA)n Simple_repeat Simple_repeat 4 36 0 359 264 99 40 chr9 6068981 6069119 -136202325 + L1ME4a LINE L1 5935 6110 -11 342 247 0 0 chr9 6069911 6069992 -136201452 + MIR SINE MIR 74 154 -108 1716 172 39 4 chr9 6070008 6070287 -136201157 + AluJb SINE Alu 1 289 -23 698 297 25 8 chr9 6070704 6070848 -136200596 + MIR SINE MIR 2 153 -109 234 0 0 0 chr9 6070848 6070874 -136200570 + (ATG)n Simple_repeat Simple_repeat 2 27 0 698 297 25 8 chr9 6070874 6070965 -136200479 + MIR SINE MIR 153 241 -21 233 297 45 45 chr9 6071078 6071189 -136200255 - MIR3 SINE MIR -92 116 6 629 252 122 32 chr9 6071783 6071894 -136199550 - L1ME4a LINE L1 -121 6000 5900 1588 197 13 7 chr9 6071894 6072203 -136199241 - AluJo SINE Alu -1 311 1 629 252 122 32 chr9 6072203 6072436 -136199008 - L1ME4a LINE L1 -221 5900 5625 585 280 100 47 chr9 6073618 6073883 -136197561 - L1ME4a LINE L1 -224 5897 5607 1753 158 47 10 chr9 6073883 6074181 -136197263 - AluJo SINE Alu -3 309 1 585 280 100 47 chr9 6074181 6074276 -136197168 - L1ME4a LINE L1 -514 5607 5518 1323 155 76 55 chr9 6074323 6074614 -136196830 - AluSx SINE Alu -13 299 3 270 239 46 15 chr9 6074812 6074942 -136196502 - L1ME LINE L1 -894 5252 5119 25 0 0 0 chr9 6074994 6075019 -136196425 + AT_rich Low_complexity Low_complexity 1 25 0 774 195 16 0 chr9 6075156 6075284 -136196160 + FLAM_A SINE Alu 1 130 -3 883 100 21 14 chr9 6076799 6076939 -136194505 + AluSg/x SINE Alu 168 308 -2 1750 211 88 25 chr9 6076978 6077509 -136193935 + L1MC2 LINE L1 4252 4816 -1330 * 2684 178 151 16 chr9 6077497 6078186 -136193258 + L1MC2 LINE L1 5569 6336 -8 1462 151 79 50 chr9 6078189 6078468 -136192976 - AluJo SINE Alu -25 287 1 2240 102 3 0 chr9 6078503 6078797 -136192647 + AluSg SINE Alu 1 295 -15 183 42 0 0 chr9 6078800 6078824 -136192620 + (TAAAAA)n Simple_repeat Simple_repeat 4 27 0 1960 195 165 7 chr9 6079305 6079741 -136191703 - MLT1D LTR MaLR 0 505 1 434 276 41 21 chr9 6079741 6079877 -136191567 + MIR SINE MIR 38 179 -83 2420 79 0 0 chr9 6079900 6080205 -136191239 - AluY SINE Alu 0 311 7 448 246 0 101 chr9 6080683 6080821 -136190623 - MIR3 SINE MIR -2 206 83 2165 121 3 3 chr9 6080852 6081150 -136190294 + AluSx SINE Alu 1 298 -14 1561 101 0 0 chr9 6081152 6081350 -136190094 + AluSq SINE Alu 1 198 -115 381 127 0 16 chr9 6081351 6081414 -136190030 + AluSq SINE Alu 239 300 -1 377 193 48 0 chr9 6081415 6081498 -136189946 + L1MCa LINE L1 1578 1664 -4762 * 5857 167 49 66 chr9 6081495 6082824 -136188620 + L1MCa LINE L1 17 1322 -5104 1157 150 9 44 chr9 6082824 6083050 -136188394 + AluSx SINE Alu 1 218 -94 1815 151 21 3 chr9 6084470 6084755 -136186689 + AluSx SINE Alu 1 290 -22 542 220 83 64 chr9 6085185 6085403 -136186041 + MER34 LTR ERV1 295 516 -26 662 268 56 6 chr9 6085418 6085597 -136185847 + MER5A DNA MER1_type 1 188 -1 186 103 0 0 chr9 6086569 6086598 -136184846 + (CCG)n Simple_repeat Simple_repeat 3 31 0 205 244 47 58 chr9 6086999 6087085 -136184359 - MIR SINE MIR -54 208 124 298 324 29 15 chr9 6087085 6087221 -136184223 - MIR SINE MIR 0 262 125 871 315 91 37 chr9 6087529 6088013 -136183431 + L2 LINE L2 2758 3271 -1 307 247 0 108 chr9 6088078 6088171 -136183273 + L2 LINE L2 3155 3237 -35 426 85 0 0 chr9 6088182 6088241 -136183203 + (TG)n Simple_repeat Simple_repeat 2 60 0 192 345 76 17 chr9 6088314 6088433 -136183011 + MIR SINE MIR 59 184 -78 242 56 28 0 chr9 6088433 6088469 -136182975 + (TAGA)n Simple_repeat Simple_repeat 1 37 0 * 432 0 0 0 chr9 6088468 6088516 -136182928 + (TG)n Simple_repeat Simple_repeat 1 48 0 755 267 88 44 chr9 6088720 6089016 -136182428 - L2 LINE L2 -9 3304 2996 291 355 41 8 chr9 6089129 6089250 -136182194 - L2 LINE L2 -10 3262 3138 197 33 33 0 chr9 6090007 6090037 -136181407 + (TGGA)n Simple_repeat Simple_repeat 1 31 0 270 307 135 26 chr9 6090134 6090326 -136181118 - MIR SINE MIR -29 233 21 282 287 9 43 chr9 6090539 6090654 -136180790 - MIR SINE MIR -72 190 80 313 278 70 17 chr9 6090745 6090860 -136180584 + MER117 DNA MER1_type 75 195 -2 243 171 0 0 chr9 6090980 6091021 -136180423 - L2 LINE L2 -19 3253 3213 1566 172 62 28 chr9 6091209 6091499 -136179945 + AluJo SINE Alu 1 300 -12 202 323 81 0 chr9 6091570 6091632 -136179812 + L2 LINE L2 3157 3223 -49 924 157 187 57 chr9 6091868 6092098 -136179346 - AluJo SINE Alu -13 299 40 1051 216 65 8 chr9 6092101 6092346 -136179098 + MSTD LTR MaLR 138 396 0 450 0 0 0 chr9 6092426 6092476 -136178968 + (TG)n Simple_repeat Simple_repeat 2 51 0 216 0 0 0 chr9 6092973 6092997 -136178447 + (T)n Simple_repeat Simple_repeat 1 24 0 1870 148 0 33 chr9 6093257 6093274 -136178170 - AluJo SINE Alu -19 293 277 186 71 0 0 chr9 6093274 6093302 -136178142 + (TATG)n Simple_repeat Simple_repeat 2 29 0 1870 148 0 33 chr9 6093302 6093587 -136177857 - AluJo SINE Alu -35 277 1 1675 171 7 52 chr9 6093593 6093902 -136177542 - AluJo SINE Alu -17 295 1 23 0 0 0 chr9 6094780 6094803 -136176641 + AT_rich Low_complexity Low_complexity 1 23 0 196 360 63 36 chr9 6095168 6095279 -136176165 - L2 LINE L2 -2 3270 3157 1663 159 0 34 chr9 6095320 6095616 -136175828 - AluJo SINE Alu 0 312 27 21 36 0 0 chr9 6095655 6095683 -136175761 + AT_rich Low_complexity Low_complexity 1 28 0 2342 103 3 3 chr9 6096236 6096547 -136174897 - AluSx SINE Alu -1 311 1 1427 194 7 4 chr9 6096547 6096809 -136174635 - L1MB5 LINE L1 -111 6063 5798 22 0 0 0 chr9 6096818 6096840 -136174604 + AT_rich Low_complexity Low_complexity 1 22 0 236 314 29 0 chr9 6097322 6097392 -136174052 - MIR SINE MIR -111 151 80 188 293 172 0 chr9 6097792 6097850 -136173594 - L2 LINE L2 -41 3231 3164 1218 64 146 0 chr9 6097870 6098041 -136173403 + MER30 DNA MER1_type 1 196 -34 22 0 0 0 chr9 6098250 6098272 -136173172 + AT_rich Low_complexity Low_complexity 1 22 0 230 318 199 0 chr9 6098336 6098487 -136172957 - MIR3 SINE MIR -12 196 16 495 205 139 0 chr9 6098529 6098680 -136172764 + MIR SINE MIR 89 260 -2 1528 134 119 32 chr9 6098932 6099209 -136172235 - AluSx SINE Alu -11 301 1 2656 173 41 15 chr9 6099363 6099905 -136171539 - MER34B LTR ERV1 0 565 10 668 177 44 0 chr9 6100036 6100149 -136171295 - FLAM_C SINE Alu -15 118 1 231 114 0 0 chr9 6100158 6100193 -136171251 + (TTCA)n Simple_repeat Simple_repeat 4 38 0 1325 90 22 0 chr9 6100193 6100371 -136171073 - AluY SINE Alu -30 281 100 512 99 0 0 chr9 6100373 6100454 -136170990 - AluY SINE Alu -49 262 182 989 102 29 0 chr9 6100454 6100591 -136170853 - AluYa8 SINE Alu -169 141 1 1191 106 116 10 chr9 6100707 6100914 -136170530 - MER30 DNA MER1_type -1 229 1 188 267 280 0 chr9 6101685 6101760 -136169684 - MIR SINE MIR -17 245 150 665 208 136 61 chr9 6101925 6102219 -136169225 - L1MC5 LINE L1 -25 7936 7621 407 265 43 8 chr9 6102681 6102798 -136168646 - L2 LINE L2 -5 3308 3188 1695 137 69 7 chr9 6103617 6103923 -136167521 + MER65A LTR ERV1 1 325 -120 3177 32 0 0 chr9 6103923 6104387 -136167057 + L1PA5 LINE L1 5576 6153 -1 771 114 38 15 chr9 6104394 6104526 -136166918 + MER65A LTR ERV1 309 443 -2 1775 166 6 25 chr9 6104670 6104984 -136166460 - AluJo SINE Alu 0 312 5 227 151 94 19 chr9 6105066 6105119 -136166325 + LTR67 LTR ERVL 501 557 0 211 211 118 145 chr9 6105148 6105300 -136166144 - MIR SINE MIR -80 182 35 578 167 72 100 chr9 6106558 6106598 -136164846 - MIR SINE MIR -34 228 188 2202 89 24 7 chr9 6106598 6106889 -136164555 - AluSp SINE Alu -17 296 1 578 167 72 100 chr9 6106889 6107028 -136164416 - MIR SINE MIR -74 188 54 501 252 107 39 chr9 6107621 6107827 -136163617 - MIR SINE MIR -24 238 19 1958 134 0 0 chr9 6108193 6108468 -136162976 + AluSx SINE Alu 1 275 -37 368 304 51 22 chr9 6108998 6109136 -136162308 + L2 LINE L2 2921 3062 -251 194 94 0 62 chr9 6109306 6109338 -136162106 - L3 LINE CR1 -25 1552 1523 8901 108 14 9 chr9 6109513 6110721 -136160723 + HSMAR1 DNA Mariner 1 1218 -69 2330 86 0 3 chr9 6110721 6111013 -136160431 + AluSc SINE Alu 1 291 -18 8901 108 14 9 chr9 6111013 6111084 -136160360 + HSMAR1 DNA Mariner 1218 1287 0 213 150 17 33 chr9 6112276 6112336 -136159108 + (TA)n Simple_repeat Simple_repeat 2 60 0 560 176 37 143 chr9 6113391 6113664 -136157780 - MER112 DNA MER1_type -6 254 11 1991 103 18 11 chr9 6113691 6114011 -136157433 + AluSp SINE Alu 1 322 0 181 160 20 20 chr9 6114038 6114088 -136157356 + GA-rich Low_complexity Low_complexity 2 51 0 378 0 0 0 chr9 6114934 6114976 -136156468 + (TG)n Simple_repeat Simple_repeat 2 43 0 1850 132 69 36 chr9 6114977 6115310 -136156134 - MER2 DNA MER2_type 0 344 1 282 317 10 30 chr9 6115363 6115464 -136155980 - MER5A DNA MER1_type 0 189 91 803 191 56 28 chr9 6115475 6115653 -136155791 + MIR SINE MIR 9 191 -71 234 0 0 0 chr9 6116614 6116640 -136154804 + (TTG)n Simple_repeat Simple_repeat 2 27 0 686 136 0 0 chr9 6116642 6116745 -136154699 - AluSc SINE Alu -18 291 189 22 70 0 0 chr9 6117140 6117183 -136154261 + AT_rich Low_complexity Low_complexity 1 43 0 22 0 0 0 chr9 6117203 6117225 -136154219 + AT_rich Low_complexity Low_complexity 1 22 0 193 230 58 69 chr9 6117802 6117889 -136153555 + L3 LINE CR1 1491 1576 -1 21 57 0 0 chr9 6118423 6118458 -136152986 + AT_rich Low_complexity Low_complexity 1 35 0 493 236 203 0 chr9 6118694 6118817 -136152627 + MER5A DNA MER1_type 41 188 -1 335 130 159 0 chr9 6119813 6119882 -136151562 - MER116 DNA Mariner 0 80 1 22 0 0 0 chr9 6120890 6120912 -136150532 + AT_rich Low_complexity Low_complexity 1 22 0 1898 149 3 3 chr9 6122835 6123136 -136148308 + AluJo SINE Alu 1 301 -11 300 65 81 0 chr9 6123550 6123612 -136147832 + (TTATG)n Simple_repeat Simple_repeat 4 70 0 32 57 0 0 chr9 6123969 6124022 -136147422 + AT_rich Low_complexity Low_complexity 1 53 0 265 128 0 0 chr9 6124226 6124273 -136147171 - L1MC2 LINE L1 -9 6335 6289 22 35 0 0 chr9 6125091 6125120 -136146324 + AT_rich Low_complexity Low_complexity 1 29 0 2133 71 7 68 chr9 6125519 6125828 -136145616 + AluSg SINE Alu 1 290 -20 631 222 108 75 chr9 6126081 6126293 -136145151 + MER20 DNA MER1_type 1 219 0 23 0 0 0 chr9 6126991 6127014 -136144430 + AT_rich Low_complexity Low_complexity 1 23 0 211 369 63 36 chr9 6127379 6127490 -136143954 - L2 LINE L2 -2 3270 3157 26 0 0 27 chr9 6127523 6127545 -136143899 + AT_rich Low_complexity Low_complexity 1 23 -13 1653 160 0 28 chr9 6127545 6127827 -136143617 - AluJo SINE Alu -12 300 27 26 0 0 27 chr9 6127827 6127841 -136143603 + AT_rich Low_complexity Low_complexity 23 36 0 21 36 0 0 chr9 6127866 6127894 -136143550 + AT_rich Low_complexity Low_complexity 1 28 0 2199 90 7 3 chr9 6128447 6128737 -136142707 - AluSx SINE Alu -1 311 21 2096 122 3 7 chr9 6128768 6129064 -136142380 - AluSg SINE Alu -15 295 1 1717 187 3 0 chr9 6129644 6129938 -136141506 - AluJb SINE Alu -17 295 1 266 132 0 0 chr9 6131234 6131272 -136140172 + tRNA-Lys-AAG tRNA tRNA 1 38 -38 2013 147 0 22 chr9 6131346 6131658 -136139786 + AluSx SINE Alu 1 305 -7 21 0 0 0 chr9 6132853 6132874 -136138570 + AT_rich Low_complexity Low_complexity 1 21 0 29 47 0 0 chr9 6133074 6133117 -136138327 + AT_rich Low_complexity Low_complexity 1 43 0 1725 167 0 13 chr9 6133313 6133618 -136137826 + MER2 DNA MER2_type 1 301 -44 225 0 0 0 chr9 6135617 6135642 -136135802 + (TA)n Simple_repeat Simple_repeat 1 25 0 245 133 67 0 chr9 6135839 6135884 -136135560 + L1MB8 LINE L1 6131 6178 0 416 314 92 59 chr9 6136077 6136316 -136135128 + MIR SINE MIR 14 260 -2 21 36 0 0 chr9 6136599 6136627 -136134817 + AT_rich Low_complexity Low_complexity 1 28 0 4739 252 99 23 chr9 6137061 6138889 -136132555 - L2 LINE L2 -2 3311 1326 246 274 44 71 chr9 6138889 6139002 -136132442 - L3b LINE CR1 -84 1499 1390 263 182 61 15 chr9 6139102 6139168 -136132276 - MIR SINE MIR -97 165 97 2187 78 0 0 chr9 6139215 6139485 -136131959 + AluY SINE Alu 35 304 -7 1274 153 5 5 chr9 6139490 6139692 -136131752 + AluJb SINE Alu 87 288 -24 2138 107 0 0 chr9 6139796 6140068 -136131376 + AluSg SINE Alu 1 272 -38 2289 115 0 0 chr9 6140623 6140935 -136130509 - AluSx SINE Alu 0 312 1 1142 171 33 19 chr9 6141513 6141723 -136129721 + AluJo SINE Alu 84 296 -16 369 0 0 0 chr9 6146427 6146468 -136124976 + (TG)n Simple_repeat Simple_repeat 2 42 0 22 35 0 0 chr9 6146750 6146779 -136124665 + AT_rich Low_complexity Low_complexity 1 29 0 677 149 74 0 chr9 6147178 6147299 -136124145 - AluSg/x SINE Alu -12 300 171 257 119 0 85 chr9 6147299 6147358 -136124086 - MADE1 DNA Mariner 0 80 27 1065 127 42 0 chr9 6147408 6147574 -136123870 - AluJb SINE Alu -135 177 5 2050 101 3 62 chr9 6148152 6148460 -136122984 - AluSx SINE Alu -22 290 1 181 268 18 54 chr9 6148481 6148537 -136122907 + L2 LINE L2 2772 2825 -489 181 355 151 17 chr9 6148538 6148710 -136122734 + L2 LINE L2 2776 2970 -344 23 68 0 0 chr9 6149413 6149457 -136121987 + AT_rich Low_complexity Low_complexity 1 44 0 318 206 0 0 chr9 6149468 6149536 -136121908 + (TA)n Simple_repeat Simple_repeat 1 68 0 204 301 24 36 chr9 6150303 6150386 -136121058 - L2 LINE L2 -203 3069 2988 394 253 101 0 chr9 6150589 6150688 -136120756 + MIR SINE MIR 136 244 -18 2697 55 0 0 chr9 6151289 6151600 -136119844 + AluY SINE Alu 1 311 0 5769 153 32 38 chr9 6153614 6154177 -136117267 + L1 LINE L1 4115 4680 -1466 2271 108 10 0 chr9 6154177 6154484 -136116960 + AluSx SINE Alu 1 310 -2 5769 153 32 38 chr9 6154484 6155093 -136116351 + L1 LINE L1 4680 5280 -866 225 211 19 0 chr9 6155109 6155161 -136116283 - MLT1J LTR MaLR -149 362 310 1132 242 132 31 chr9 6155761 6156178 -136115266 - MER113 DNA MER1_type? -42 479 21 2421 76 3 0 chr9 6156454 6156745 -136114699 + AluSp SINE Alu 1 292 -21 951 211 32 0 chr9 6157800 6157985 -136113459 - MIR SINE MIR -71 191 1 1227 177 77 39 chr9 6157994 6158035 -136113409 - MER33 DNA MER1_type -2262 323 285 2271 114 0 0 chr9 6158035 6158341 -136113103 - AluSq SINE Alu -7 306 1 1227 177 77 39 chr9 6158341 6158610 -136112834 - MER33 DNA MER1_type -2300 285 1 493 121 55 22 chr9 6158835 6158926 -136112518 - L1MB3 LINE L1 -2 6181 6088 484 258 108 11 chr9 6159214 6159400 -136112044 + MIR SINE MIR 49 252 -10 1778 97 136 60 chr9 6159444 6159664 -136111780 + L1MCa LINE L1 1723 1981 -4445 1314 209 87 7 chr9 6159664 6159941 -136111503 - AluJo SINE Alu -2 300 2 1778 97 136 60 chr9 6159941 6160072 -136111372 + L1MCa LINE L1 1981 2101 -4325 1702 211 23 8 chr9 6160073 6160424 -136111020 - MER4D LTR ERV1 0 903 548 429 132 60 24 chr9 6160423 6160532 -136110912 - MER4E LTR ERV1 -588 284 62 * 1536 166 55 7 chr9 6160506 6160795 -136110649 - MER49 LTR ERV1 -620 303 1 6333 180 45 91 chr9 6160795 6160939 -136110505 + L1MCa LINE L1 2099 2248 -4178 2304 104 0 0 chr9 6160939 6161238 -136110206 + AluY SINE Alu 1 299 -12 2064 110 28 14 chr9 6161247 6161537 -136109907 + AluSx SINE Alu 1 294 -18 6333 180 45 91 chr9 6161537 6161853 -136109591 + L1MCa LINE L1 2256 2585 -3841 2213 112 0 3 chr9 6161853 6162148 -136109296 + AluSx SINE Alu 1 294 -18 6333 180 45 91 chr9 6162148 6163205 -136108239 + L1MCa LINE L1 2585 3689 -2737 1553 154 0 126 chr9 6163205 6163562 -136107882 + AluJo SINE Alu 1 312 0 6333 180 45 91 chr9 6163562 6164190 -136107254 + L1MCa LINE L1 3689 4122 -2304 2043 144 0 10 chr9 6164190 6164496 -136106948 + AluJb SINE Alu 1 303 -9 6333 180 45 91 chr9 6164496 6164847 -136106597 + L1MCa LINE L1 4122 4487 -1939 204 247 165 17 chr9 6164949 6165085 -136106359 - MER5A DNA MER1_type -23 155 3 30 27 0 0 chr9 6165610 6165647 -136105797 + AT_rich Low_complexity Low_complexity 1 37 0 347 250 135 0 chr9 6166176 6166272 -136105172 - L2 LINE L2 -23 3249 3141 2101 167 32 47 chr9 6167473 6167677 -136103767 + MSTD LTR MaLR 1 198 -198 1556 127 69 33 chr9 6167677 6167953 -136103491 + AluJb SINE Alu 12 297 -15 2101 167 32 47 chr9 6167953 6168150 -136103294 + MSTD LTR MaLR 198 396 0 558 283 73 34 chr9 6168838 6169071 -136102373 - MIR SINE MIR 0 262 21 277 337 11 0 chr9 6169580 6169672 -136101772 - MIR3 SINE MIR -8 200 108 486 281 119 5 chr9 6169692 6169877 -136101567 - MIR SINE MIR -1 261 56 215 254 113 14 chr9 6169900 6169971 -136101473 - MIR3 SINE MIR -125 83 6 483 326 17 6 chr9 6170228 6170406 -136101038 + MER5A DNA MER1_type 9 188 -1 22 0 0 0 chr9 6170606 6170628 -136100816 + AT_rich Low_complexity Low_complexity 1 22 0 834 247 155 43 chr9 6171109 6171737 -136099707 + LTR50 LTR ERVL 3 787 -8 405 279 163 7 chr9 6171941 6172088 -136099356 + MIR SINE MIR 8 177 -85 303 271 225 7 chr9 6172117 6172268 -136099176 + MLT1J LTR MaLR 170 353 -158 182 367 127 13 chr9 6172824 6172903 -136098541 + L2 LINE L2 3133 3220 -52 527 62 0 0 chr9 6175388 6175453 -136095991 + HSMAR1 DNA Mariner 1223 1287 0 603 97 0 174 chr9 6175590 6175745 -136095699 - MER53 DNA DNA -19 170 43 616 159 0 28 chr9 6175755 6175862 -136095582 - U13 snRNA snRNA 0 104 1 495 279 29 23 chr9 6176899 6177071 -136094373 - MER5A DNA MER1_type 0 189 17 289 234 0 85 chr9 6177312 6177365 -136094079 + L2 LINE L2 3208 3251 -62 1041 210 83 5 chr9 6177365 6177570 -136093874 - MER58A DNA MER1_type -3 221 1 289 234 0 85 chr9 6177570 6177610 -136093834 + L2 LINE L2 3251 3293 -20 363 169 28 0 chr9 6178410 6178481 -136092963 - MER116 DNA Mariner -5 75 3 237 227 53 27 chr9 6181081 6181156 -136090288 - L1M3f LINE L1 -5022 306 230 425 325 38 19 chr9 6181946 6182103 -136089341 - L2 LINE L2 -3 3269 3110 668 262 38 99 chr9 6182168 6182391 -136089053 + MLT1J LTR MaLR 1 236 -275 1969 156 3 19 chr9 6182391 6182705 -136088739 + AluJo SINE Alu 1 309 -3 668 262 38 99 chr9 6182705 6182777 -136088667 + MLT1J LTR MaLR 236 311 -200 2188 194 29 52 chr9 6182777 6183293 -136088151 - MLT1D LTR MaLR -1 504 1 668 262 38 99 chr9 6183293 6183439 -136088005 + MLT1J LTR MaLR 311 416 -95 253 300 80 0 chr9 6183522 6183622 -136087822 - L2 LINE L2 -237 3035 2928 1939 123 0 0 chr9 6183971 6184231 -136087213 + AluSx SINE Alu 31 290 -22 250 356 0 0 chr9 6184342 6184401 -136087043 + G-rich Low_complexity Low_complexity 1 59 0 320 169 34 0 chr9 6184434 6184493 -136086951 + LTR40a LTR ERVL 457 517 -2 205 171 0 0 chr9 6184495 6184536 -136086908 + A-rich Low_complexity Low_complexity 3 43 0 344 205 25 57 chr9 6184650 6184772 -136086672 + L1MC4 LINE L1 7098 7215 -827 338 305 117 15 chr9 6184781 6184978 -136086466 + L1MC4 LINE L1 7274 7490 -552 1796 88 0 0 chr9 6185364 6185591 -136085853 - AluY SINE Alu 0 311 85 2413 97 3 0 chr9 6185602 6185912 -136085532 - AluSx SINE Alu 0 312 2 21 0 0 0 chr9 6186003 6186024 -136085420 + AT_rich Low_complexity Low_complexity 1 21 0 2239 86 41 0 chr9 6186332 6186622 -136084822 - AluSx SINE Alu -10 302 1 569 248 33 8 chr9 6187021 6187142 -136084302 + L2 LINE L2 3190 3313 0 21 36 0 0 chr9 6187556 6187584 -136083860 + AT_rich Low_complexity Low_complexity 1 28 0 3578 212 74 30 chr9 6187902 6188187 -136083257 + L1ME1 LINE L1 4724 4995 -1171 2206 103 0 7 chr9 6188187 6188469 -136082975 - AluSx SINE Alu -31 281 2 3578 212 74 30 chr9 6188469 6189554 -136081890 + L1ME1 LINE L1 4995 6161 -5 517 279 49 11 chr9 6189618 6189801 -136081643 - LTR33A LTR ERVL -2 521 332 656 280 213 17 chr9 6189801 6190204 -136081240 - LTR50 LTR ERVL -306 489 8 1029 199 35 87 chr9 6190307 6190528 -136080916 - L1MC5 LINE L1 -728 7233 7071 1729 165 22 41 chr9 6190528 6190844 -136080600 + AluJo SINE Alu 1 310 -2 1029 199 35 87 chr9 6190844 6191031 -136080413 - L1MC5 LINE L1 -890 7071 6876 6393 130 30 65 chr9 6191890 6193621 -136077823 - HERVH LTR ERV1 -5916 1797 1 3112 92 11 9 chr9 6193623 6194070 -136077374 - LTR7 LTR ERV1 -2 448 1 294 308 27 104 chr9 6194081 6194380 -136077064 + L2 LINE L2 2804 3079 -193 2466 77 0 0 chr9 6194576 6194875 -136076569 - AluSc SINE Alu -10 299 1 2344 80 0 43 chr9 6194922 6195248 -136076196 - AluSx SINE Alu 0 312 1 553 192 54 42 chr9 6195252 6195426 -136076018 - L1MC/D LINE L1 -589 5575 5395 21 0 0 0 chr9 6195438 6195459 -136075985 + AT_rich Low_complexity Low_complexity 1 21 0 2354 122 0 0 chr9 6195533 6195845 -136075599 + AluSx SINE Alu 1 312 0 339 344 38 38 chr9 6195898 6196081 -136075363 - MER5A DNA MER1_type 0 189 7 2289 98 0 0 chr9 6196122 6196409 -136075035 - AluSc SINE Alu -22 287 1 2277 99 3 13 chr9 6196872 6197184 -136074260 + AluSc SINE Alu 1 309 0 226 340 46 46 chr9 6197244 6197397 -136074047 - MIR3 SINE MIR -39 169 17 213 270 0 16 chr9 6197421 6197484 -136073960 + MER5A DNA MER1_type 127 188 -1 1592 151 69 7 chr9 6197542 6197847 -136073597 - L1MB8 LINE L1 0 6178 5855 1980 125 10 3 chr9 6197919 6198214 -136073230 + AluJb SINE Alu 1 297 -15 183 314 186 0 chr9 6202967 6203053 -136068391 + MIR SINE MIR 161 262 0 282 271 81 27 chr9 6203228 6203431 -136068013 + L1ME4a LINE L1 5878 6095 -26 2211 105 10 3 chr9 6203431 6203736 -136067708 - AluSq SINE Alu -6 307 1 282 271 81 27 chr9 6203736 6203753 -136067691 + L1ME4a LINE L1 6095 6110 -11 440 168 193 0 chr9 6204046 6204165 -136067279 + MIR SINE MIR 121 262 0 206 224 0 20 chr9 6205691 6205740 -136065704 + C-rich Low_complexity Low_complexity 2 49 0 22 89 0 0 chr9 6205922 6205967 -136065477 + GC_rich Low_complexity Low_complexity 1 45 0 24 53 0 0 chr9 6206020 6206058 -136065386 + GC_rich Low_complexity Low_complexity 1 38 0 300 305 71 108 chr9 6206286 6206748 -136064696 - L1M2 LINE L1 -5761 1088 644 768 184 55 18 chr9 6207775 6207938 -136063506 + MIR SINE MIR 91 259 -3 238 217 22 0 chr9 6208408 6208454 -136062990 - L3 LINE CR1 -7 1570 1524 23 33 0 0 chr9 6208562 6208592 -136062852 + AT_rich Low_complexity Low_complexity 1 30 0 1936 85 22 0 chr9 6208596 6208866 -136062578 - AluSx SINE Alu -36 276 1 269 269 60 0 chr9 6209642 6209709 -136061735 + MIR3 SINE MIR 89 159 -49 356 238 25 0 chr9 6210130 6210210 -136061234 + Charlie7 DNA MER1_type 3 84 -2528 37 39 0 0 chr9 6210293 6210344 -136061100 + AT_rich Low_complexity Low_complexity 1 51 0 21 0 0 0 chr9 6210882 6210903 -136060541 + AT_rich Low_complexity Low_complexity 1 21 0 1684 166 30 27 chr9 6211111 6211407 -136060037 + AluSq SINE Alu 2 298 -15 213 186 0 23 chr9 6211846 6211889 -136059555 - L2 LINE L2 -5 3267 3226 236 296 84 0 chr9 6212428 6212499 -136058945 - L2 LINE L2 -5 3267 3191 224 357 137 15 chr9 6212578 6213032 -136058412 - L2 LINE L2 -376 2938 2430 393 263 50 12 chr9 6213908 6214068 -136057376 + L1ME4a LINE L1 5951 6116 -5 192 274 119 24 chr9 6214225 6214309 -136057135 - L2 LINE L2 -1 3271 3180 272 318 88 46 chr9 6214339 6214515 -136056929 - L2 LINE L2 -310 2962 2793 23 0 0 0 chr9 6214994 6215017 -136056427 + AT_rich Low_complexity Low_complexity 1 23 0 310 320 98 7 chr9 6215918 6216071 -136055373 + L2 LINE L2 2307 2473 -841 260 276 145 41 chr9 6216189 6216334 -136055110 + L2 LINE L2 3154 3313 0 1965 150 0 38 chr9 6217467 6217787 -136053657 + AluSx SINE Alu 4 311 -1 22 56 0 0 chr9 6217903 6217939 -136053505 + AT_rich Low_complexity Low_complexity 1 36 0 292 303 183 6 chr9 6217947 6218122 -136053322 + L2 LINE L2 2195 2400 -914 242 327 111 7 chr9 6218418 6218571 -136052873 - L2 LINE L2 -1354 1960 1792 2347 82 3 3 chr9 6218895 6219199 -136052245 + AluSp SINE Alu 1 304 -9 613 240 74 4 chr9 6219727 6220224 -136051220 - Charlie7 DNA MER1_type 0 2612 2020 1492 251 122 9 chr9 6220226 6220685 -136050759 + LTR33 LTR ERVL 1 511 -10 585 131 82 112 chr9 6220695 6220758 -136050686 - Charlie7 DNA MER1_type -591 2021 1958 2254 102 10 0 chr9 6220758 6221061 -136050383 - AluSx SINE Alu -6 306 1 585 131 82 112 chr9 6221061 6221203 -136050241 - Charlie7 DNA MER1_type -654 1958 1822 21 36 0 0 chr9 6221628 6221656 -136049788 + AT_rich Low_complexity Low_complexity 1 28 0 1017 302 79 23 chr9 6221800 6222349 -136049095 - L2 LINE L2 -14 3299 2705 2154 125 0 7 chr9 6222349 6222654 -136048790 - AluSx SINE Alu -9 303 1 1017 302 79 23 chr9 6222654 6222767 -136048677 - L2 LINE L2 -608 2705 2600 189 0 0 0 chr9 6222893 6222914 -136048530 + (TA)n Simple_repeat Simple_repeat 1 21 0 666 318 84 14 chr9 6222968 6223453 -136047991 - L1MC4a LINE L1 -1903 5974 5456 21 36 0 0 chr9 6223819 6223847 -136047597 + AT_rich Low_complexity Low_complexity 1 28 0 1900 125 45 3 chr9 6224266 6224554 -136046890 + AluJb SINE Alu 1 300 -12 860 169 38 76 chr9 6224775 6224959 -136046485 - AluJb SINE Alu -10 302 126 2284 96 3 13 chr9 6224959 6225273 -136046171 - AluSp SINE Alu -2 311 1 24 53 0 0 chr9 6226009 6226047 -136045397 + AT_rich Low_complexity Low_complexity 1 38 0 196 375 0 0 chr9 6226184 6226240 -136045204 - L3 LINE CR1 -1 1576 1521 192 255 43 0 chr9 6226386 6226433 -136045011 - MIR SINE MIR -60 148 100 591 253 10 3 chr9 6227048 6227244 -136044200 - MIR SINE MIR 0 262 6 23 0 0 0 chr9 6227550 6227573 -136043871 + AT_rich Low_complexity Low_complexity 1 23 0 4763 77 22 2 chr9 6227608 6228248 -136043196 + L1PA10 LINE L1 5507 6159 -9 1939 241 104 22 chr9 6228387 6228409 -136043035 - L1MC4a LINE L1 -847 5368 5349 2352 94 3 0 chr9 6228409 6228718 -136042726 - AluSp SINE Alu -3 310 1 1939 241 104 22 chr9 6228718 6229578 -136041866 - L1MC4a LINE L1 -866 5349 4365 509 222 36 30 chr9 6229574 6229741 -136041703 - L1MC4a LINE L1 -3633 2582 2415 * 1443 240 84 57 chr9 6229717 6230215 -136041229 - L1MC4a LINE L1 -4257 2139 1611 396 0 0 0 chr9 6230215 6230259 -136041185 + (TG)n Simple_repeat Simple_repeat 2 45 0 1443 240 84 57 chr9 6230259 6230547 -136040897 - L1MC4a LINE L1 -4785 1611 1332 286 190 175 36 chr9 6230557 6230694 -136040750 - L1MC4a LINE L1 -5267 1129 974 615 296 89 25 chr9 6230706 6231101 -136040343 - L1MC4a LINE L1 -5483 913 494 273 231 0 0 chr9 6231161 6231213 -136040231 - MER2 DNA MER2_type 0 345 294 405 358 55 12 chr9 6231308 6231473 -136039971 - L1MC4a LINE L1 -6012 384 213 2283 138 104 3 chr9 6231474 6231858 -136039586 - MSTC LTR MaLR 0 428 6 571 243 40 12 chr9 6231872 6232045 -136039399 - L1MC4a LINE L1 -6183 213 36 210 143 0 0 chr9 6232153 6232188 -136039256 + (CATA)n Simple_repeat Simple_repeat 2 36 0 1080 59 0 0 chr9 6232190 6232325 -136039119 - L1PB1 LINE L1 -7 6144 6010 310 269 48 87 chr9 6232349 6232557 -136038887 - L1ME3 LINE L1 -295 5867 5668 548 97 18 26 chr9 6232558 6232671 -136038773 + (TAGA)n Simple_repeat Simple_repeat 2 113 0 216 290 145 0 chr9 6232671 6232733 -136038711 + L2 LINE L2 2250 2320 -994 357 331 70 6 chr9 6232937 6233094 -136038350 - LTR33 LTR ERVL -265 256 90 219 69 0 0 chr9 6233268 6233297 -136038147 + (TTG)n Simple_repeat Simple_repeat 2 30 0 2135 132 7 0 chr9 6234177 6234487 -136036957 - AluSx SINE Alu 0 312 1 1852 148 20 10 chr9 6234687 6234990 -136036454 - AluJb SINE Alu -6 306 1 415 350 0 21 chr9 6235195 6235338 -136036106 + LTR67 LTR ERVL 13 152 -405 467 233 40 45 chr9 6235501 6235677 -136035767 + LTR67 LTR ERVL 380 554 -3 2294 70 42 0 chr9 6236371 6236656 -136034788 - AluY SINE Alu -14 297 1 195 320 48 39 chr9 6237091 6237194 -136034250 + MIR SINE MIR 41 144 -64 624 190 83 24 chr9 6238036 6238241 -136033203 - HAL1 LINE L1 -30 2477 2261 2181 206 71 36 chr9 6238514 6238756 -136032688 - L1MEc LINE L1 -5227 1169 937 2309 106 3 13 chr9 6238756 6239068 -136032376 - AluSq SINE Alu -4 309 1 2181 206 71 36 chr9 6239068 6239443 -136032001 - L1MEc LINE L1 -5459 937 530 1193 255 66 45 chr9 6239471 6239867 -136031577 - L1MEc LINE L1 -5955 441 38 532 285 68 41 chr9 6239888 6240299 -136031145 - L1MEc LINE L1 -4729 1667 1246 1744 174 24 0 chr9 6240317 6240615 -136030829 - AluJo SINE Alu -7 305 1 2134 132 0 0 chr9 6240749 6241037 -136030407 - AluSx SINE Alu -24 288 1 250 284 67 8 chr9 6241261 6241395 -136030049 - HAL1 LINE L1 -862 1645 1504 2270 191 34 0 chr9 6241395 6241813 -136029631 - MSTB1 LTR MaLR 0 432 1 393 321 82 51 chr9 6241832 6242443 -136029001 - L1MEc LINE L1 -5167 1038 409 23 33 0 0 chr9 6242529 6242559 -136028885 + AT_rich Low_complexity Low_complexity 1 30 0 1794 182 76 50 chr9 6242749 6243142 -136028302 - L1M4 LINE L1 -435 5749 5317 2204 125 0 3 chr9 6243142 6243453 -136027991 - AluSq SINE Alu -3 310 1 1794 182 76 50 chr9 6243453 6243760 -136027684 - L1M4 LINE L1 -867 5317 5019 23 0 0 0 chr9 6243936 6243959 -136027485 + AT_rich Low_complexity Low_complexity 1 23 0 2240 102 0 7 chr9 6244376 6244680 -136026764 + AluSx SINE Alu 1 302 -10 2283 114 0 0 chr9 6247464 6247771 -136023673 + AluSg SINE Alu 1 307 -3 28 0 0 0 chr9 6247781 6247809 -136023635 + AT_rich Low_complexity Low_complexity 1 28 0 21 36 0 0 chr9 6247826 6247854 -136023590 + AT_rich Low_complexity Low_complexity 1 28 0 464 203 133 31 chr9 6248450 6248511 -136022933 - MER103 DNA DNA 0 166 113 555 253 119 66 chr9 6248511 6248831 -136022613 - MER46C DNA MER2_type -1 337 1 464 203 133 31 chr9 6248831 6248897 -136022547 - MER103 DNA DNA -53 113 26 14261 23 2 0 chr9 6249152 6252076 -136019368 - L1PA2 LINE L1 0 6155 3227 2003 19 0 0 chr9 6252072 6252329 -136019115 + L1PA2 LINE L1 2981 3237 -2909 * 23 0 0 0 chr9 6252715 6252738 -136018706 + AT_rich Low_complexity Low_complexity 1 23 0 446 250 55 30 chr9 6253244 6253444 -136018000 - L1ME4a LINE L1 -205 5916 5712 2421 91 0 0 chr9 6253634 6253942 -136017502 - AluSq SINE Alu -5 308 1 703 212 42 94 chr9 6254693 6254905 -136016539 - MIR SINE MIR -3 259 59 593 130 10 0 chr9 6255601 6255701 -136015743 - FLAM_A SINE Alu -26 116 16 27 0 0 0 chr9 6256407 6256434 -136015010 + AT_rich Low_complexity Low_complexity 1 27 0 379 294 95 50 chr9 6256630 6256851 -136014593 + MIR SINE MIR 20 250 -12 592 296 42 19 chr9 6256891 6257107 -136014337 + MIR SINE MIR 35 255 -7 251 376 73 18 chr9 6257327 6257436 -136014008 - L2 LINE L2 -50 3222 3108 774 222 53 113 chr9 6257592 6257858 -136013586 - MIR SINE MIR -3 259 10 2352 110 0 0 chr9 6259108 6259416 -136012028 - AluSq SINE Alu -5 308 1 3127 99 12 12 chr9 6259575 6260061 -136011383 - MER41A LTR ERV1 -68 486 1 480 267 105 53 chr9 6260068 6260315 -136011129 - HAL1 LINE L1 -1172 1335 1076 567 81 12 0 chr9 6260349 6260435 -136011009 - L1M4 LINE L1 -3424 2722 2636 237 211 0 0 chr9 6262213 6262270 -136009174 + (TA)n Simple_repeat Simple_repeat 1 57 0 1984 62 0 4 chr9 6262939 6263180 -136008264 + AluSc SINE Alu 61 300 -9 4700 163 49 37 chr9 6265049 6266339 -136005105 - L1MA9 LINE L1 -5 7726 6416 396 104 0 0 chr9 6266348 6266415 -136005029 - L1MA3 LINE L1 -1 6304 6238 339 62 44 239 chr9 6266415 6266477 -136004967 - L1MA2 LINE L1 -196 6108 6076 1599 193 44 0 chr9 6266477 6266751 -136004693 - AluJo SINE Alu -26 286 1 339 62 44 239 chr9 6266751 6266801 -136004643 - L1MA2 LINE L1 -228 6076 6018 11554 153 45 70 chr9 6266805 6267081 -136004363 - L1MA9 LINE L1 -1139 6426 6145 1629 181 40 27 chr9 6267081 6267451 -136003993 + THE1C LTR MaLR 1 375 0 11554 153 45 70 chr9 6267451 6267782 -136003662 - L1MA9 LINE L1 -1420 6145 5807 2249 120 3 0 chr9 6267782 6268090 -136003354 - AluSq SINE Alu -4 309 1 11554 153 45 70 chr9 6268090 6268483 -136002961 - L1MA9 LINE L1 -1758 5807 5406 3294 115 33 4 chr9 6268483 6268523 -136002921 - L1MA2 LINE L1 0 6304 6267 1879 161 0 31 chr9 6268523 6268840 -136002604 - AluJb SINE Alu -5 307 1 3294 115 33 4 chr9 6268840 6269345 -136002099 - L1MA2 LINE L1 -37 6267 5743 11554 153 45 70 chr9 6269345 6270387 -136001057 - L1MA9 LINE L1 -2159 5406 4340 1665 187 38 0 chr9 6270387 6270676 -136000768 - AluJb SINE Alu -12 300 1 11554 153 45 70 chr9 6270676 6272565 -135998879 - L1MA9 LINE L1 -3225 4340 2654 2439 64 3 0 chr9 6272565 6272862 -135998582 - AluY SINE Alu -13 298 1 11554 153 45 70 chr9 6272862 6274184 -135997260 - L1MA9 LINE L1 -4911 2654 1301 287 263 184 11 chr9 6274291 6274481 -135996963 + MER113 DNA MER1_type? 5 227 -294 1224 177 0 32 chr9 6274491 6274711 -135996733 + AluJb SINE Alu 3 215 -97 557 202 0 0 chr9 6274894 6274988 -135996456 + AluJb SINE Alu 198 291 -21 362 275 72 18 chr9 6275029 6275196 -135996248 + MER113 DNA MER1_type? 297 472 -49 30 59 0 0 chr9 6275247 6275298 -135996146 + AT_rich Low_complexity Low_complexity 1 51 0 793 242 57 8 chr9 6275583 6275847 -135995597 - L1ME1 LINE L1 -48 6118 5842 920 196 63 1 chr9 6275854 6276058 -135995386 - L1PB4 LINE L1 -2 6164 5948 1240 228 112 36 chr9 6276058 6276569 -135994875 - L1ME1 LINE L1 -339 5827 5320 964 240 65 0 chr9 6276579 6276808 -135994636 - AluJo SINE Alu -66 246 3 373 153 41 31 chr9 6276809 6276907 -135994537 - L1ME1 LINE L1 -821 5325 5227 * 3469 177 39 49 chr9 6276906 6277803 -135993641 - L1MB3 LINE L1 -65 6820 5934 483 200 62 76 chr9 6277809 6277954 -135993490 + Tigger3(Golem) DNA MER2_type 1 143 -2886 * 1375 169 4 11 chr9 6277950 6278210 -135993234 + Tigger3(Golem) DNA MER2_type 2771 3028 -1 2946 267 35 16 chr9 6278210 6279363 -135992081 - L1MB3 LINE L1 -920 5928 4727 1960 142 0 37 chr9 6279363 6279408 -135992036 - AluSx SINE Alu 0 312 267 558 43 0 0 chr9 6279408 6279477 -135991967 + (TGG)n Simple_repeat Simple_repeat 2 70 0 1960 142 0 37 chr9 6279477 6279755 -135991689 - AluSx SINE Alu -45 267 1 2946 267 35 16 chr9 6279755 6279895 -135991549 - L1MB3 LINE L1 -2121 4727 4591 2655 135 41 3 chr9 6279888 6280471 -135990973 - L1M1 LINE L1 -541 5762 5164 * 751 164 8 8 chr9 6280494 6280622 -135990822 + AluJb SINE Alu 172 299 -13 433 230 7 30 chr9 6280624 6280759 -135990685 + L1 LINE L1 2764 2895 -3251 7242 216 55 37 chr9 6280760 6282891 -135988553 - L1MB3 LINE L1 -4679 2170 1 6600 162 35 18 chr9 6282890 6283030 -135988414 - L1M1 LINE L1 -1011 5135 4999 * 2213 113 7 13 chr9 6283030 6283339 -135988105 - AluSx SINE Alu -5 307 1 6600 162 35 18 chr9 6283339 6284599 -135986845 - L1M1 LINE L1 -1147 4999 3711 1599 221 14 45 chr9 6284601 6285057 -135986387 - L1M4 LINE L1 -1194 4952 4512 2233 136 0 0 chr9 6285057 6285367 -135986077 - AluSg SINE Alu 0 310 1 1599 221 14 45 chr9 6285367 6285422 -135986022 - L1M4 LINE L1 -1634 4512 4457 1351 153 5 23 chr9 6285475 6285690 -135985754 - AluJb SINE Alu -16 296 86 2101 130 3 13 chr9 6285703 6286019 -135985425 - AluSq SINE Alu 0 313 1 1759 144 26 52 chr9 6286019 6286324 -135985120 - AluSq SINE Alu -15 298 1 2411 220 58 74 chr9 6286354 6286763 -135984681 - L1M4 LINE L1 -1793 4353 3939 2227 117 3 0 chr9 6286763 6287072 -135984372 - AluSq SINE Alu -3 310 1 2411 220 58 74 chr9 6287072 6287337 -135984107 - L1M4 LINE L1 -2207 3939 3695 2347 82 0 13 chr9 6287337 6287641 -135983803 - AluY SINE Alu -11 300 1 2411 220 58 74 chr9 6287641 6287885 -135983559 - L1M4 LINE L1 -2451 3695 3449 452 359 42 9 chr9 6288856 6289073 -135982371 - MIR SINE MIR -5 257 34 2402 235 62 13 chr9 6289210 6289903 -135981541 + Cheshire DNA MER1_type 1 727 -1693 1202 220 33 3 chr9 6289894 6290194 -135981250 + Cheshire DNA MER1_type 940 1248 -1172 * 783 200 29 44 chr9 6290197 6290589 -135980855 + Cheshire DNA MER1_type 1373 2249 -171 959 206 31 182 chr9 6290599 6291317 -135980127 - L1M4 LINE L1 -1222 4924 4316 * 19874 156 21 10 chr9 6291312 6295599 -135975845 - L1PA11 LINE L1 -5 7607 3272 2202 94 7 17 chr9 6295599 6295896 -135975548 + AluSc SINE Alu 1 294 -15 19874 156 21 10 chr9 6295896 6296458 -135974986 - L1PA11 LINE L1 -4340 3272 2718 1073 143 15 0 chr9 6296464 6296660 -135974784 - L1P LINE L1 -3577 2569 2371 * 2297 205 45 30 chr9 6296656 6297721 -135973723 - L1PA11 LINE L1 -3551 4033 983 1537 222 109 2 chr9 6297722 6298274 -135973170 - L1M4 LINE L1 -1804 4840 4195 647 251 66 29 chr9 6298293 6298514 -135972930 - L1M4 LINE L1 -2713 3931 3689 1457 221 10 0 chr9 6298514 6298803 -135972641 + AluJo SINE Alu 1 292 -20 647 251 66 29 chr9 6298803 6298959 -135972485 - L1M4 LINE L1 -2955 3689 3540 1925 151 7 3 chr9 6298976 6299275 -135972169 - AluJo SINE Alu -12 300 1 624 72 10 21 chr9 6299305 6299402 -135972042 - THE1C-int LTR MaLR -1484 96 1 2549 105 13 8 chr9 6299402 6299775 -135971669 - THE1C LTR MaLR 0 375 1 2079 226 94 23 chr9 6299776 6300662 -135970782 - L1M4 LINE L1 -4833 1709 835 2410 74 0 12 chr9 6300681 6301020 -135970424 - L1PB1 LINE L1 -75 6076 5742 2393 122 129 9 chr9 6301078 6301511 -135969933 - MER31A LTR ERV1 0 485 1 21 0 0 0 chr9 6301916 6301937 -135969507 + AT_rich Low_complexity Low_complexity 1 21 0 2373 133 81 60 chr9 6302143 6302639 -135968805 - LTR8A LTR ERV1 0 727 222 1981 127 0 20 chr9 6302717 6303047 -135968397 - AluSx SINE Alu 0 324 1 413 337 96 38 chr9 6304029 6304427 -135967017 + HAL1 LINE L1 1181 1601 -906 439 291 156 14 chr9 6304691 6305007 -135966437 + L1MC4a LINE L1 5299 5569 -558 210 37 0 0 chr9 6305007 6305034 -135966410 + (TA)n Simple_repeat Simple_repeat 1 27 0 439 291 156 14 chr9 6305034 6305252 -135966192 + L1MC4a LINE L1 5569 5932 -195 227 292 108 0 chr9 6305610 6305740 -135965704 + L1ME4a LINE L1 5978 6121 0 2977 90 33 11 chr9 6305953 6306407 -135965037 + MER4C LTR ERV1 2 465 0 1924 165 138 37 chr9 6306424 6306910 -135964534 - LTR10A LTR ERV1 -61 548 14 1336 92 61 0 chr9 6307375 6307571 -135963873 + LTR8A LTR ERV1 1 208 -519 759 162 0 0 chr9 6307571 6307688 -135963756 - FLAM_C SINE Alu -26 117 1 743 211 12 19 chr9 6307872 6308033 -135963411 - MIR SINE MIR -29 233 74 2521 230 48 11 chr9 6308201 6308862 -135962582 - L1ME1 LINE L1 -192 6043 5358 1071 214 70 0 chr9 6308864 6309149 -135962295 - L1ME1 LINE L1 -1191 5024 4720 42520 43 11 5 chr9 6309324 6312287 -135959157 - L1PA4 LINE L1 -3 6152 3208 2860 7 0 0 chr9 6312287 6312597 -135958847 - AluY SINE Alu -1 310 1 42520 43 11 5 chr9 6312597 6315745 -135955699 - L1PA4 LINE L1 -2947 3208 7 243 0 0 0 chr9 6315746 6315773 -135955671 + (C)n Simple_repeat Simple_repeat 1 27 0 4077 230 138 31 chr9 6315775 6316560 -135954884 - L1ME1 LINE L1 -1508 4707 4007 7838 26 0 0 chr9 6316560 6318261 -135953183 + L1PA2 LINE L1 4453 6154 -1 4077 230 138 31 chr9 6318261 6319170 -135952274 - L1ME1 LINE L1 -2208 4007 2833 373 184 23 23 chr9 6319157 6319244 -135952200 - L1ME1 LINE L1 -4472 1924 1838 * 22 0 0 0 chr9 6319263 6319285 -135952159 + AT_rich Low_complexity Low_complexity 1 22 0 469 258 129 41 chr9 6319310 6319698 -135951746 - L1ME1 LINE L1 -5142 1254 833 * 761 268 39 9 chr9 6319690 6319921 -135951523 - L1ME1 LINE L1 -6066 330 93 2459 68 0 10 chr9 6320512 6320822 -135950622 - AluY SINE Alu -4 307 1 197 116 0 23 chr9 6322403 6322446 -135948998 + (TAAAA)n Simple_repeat Simple_repeat 3 44 0 25 31 0 0 chr9 6322460 6322492 -135948952 + AT_rich Low_complexity Low_complexity 1 32 0 331 296 59 30 chr9 6322540 6322709 -135948735 + L1ME4a LINE L1 5743 5916 -205 566 317 95 21 chr9 6323643 6323886 -135947558 + MIR SINE MIR 2 262 0 255 313 104 22 chr9 6324084 6324218 -135947226 + MIR SINE MIR 77 221 -41 735 256 103 0 chr9 6324308 6324511 -135946933 - MIR SINE MIR -38 224 1 450 292 141 48 chr9 6326391 6326703 -135944741 - L2 LINE L2 -42 3271 2931 2283 100 7 0 chr9 6327043 6327342 -135944102 - AluSx SINE Alu -11 301 1 295 65 0 87 chr9 6328176 6328222 -135943222 - L1ME LINE L1 -512 5654 5613 893 281 127 27 chr9 6328225 6328925 -135942519 - L1MEc LINE L1 -5571 825 56 193 267 22 0 chr9 6329260 6329305 -135942139 - L2 LINE L2 -18 3254 3209 197 324 93 86 chr9 6330098 6330237 -135941207 + MIR3 SINE MIR 21 160 -48 1907 177 80 6 chr9 6330618 6330968 -135940476 + MER6A DNA MER2_type 43 418 -187 31 18 0 53 chr9 6332034 6332091 -135939353 + AT_rich Low_complexity Low_complexity 1 54 0 22 70 0 0 chr9 6332286 6332329 -135939115 + AT_rich Low_complexity Low_complexity 1 43 0 1775 123 67 7 chr9 6332800 6333084 -135938360 + AluSx SINE Alu 1 301 -11 1804 98 130 144 chr9 6333750 6334002 -135937442 - MSTA LTR MaLR 0 428 183 1997 110 3 26 chr9 6334002 6334310 -135937134 - AluSx SINE Alu -3 309 9 1804 98 130 144 chr9 6334310 6334487 -135936957 - MSTA LTR MaLR -245 183 5 2123 136 26 6 chr9 6334496 6334841 -135936603 - MSTA-int LTR MaLR -6 1645 1294 9368 210 86 49 chr9 6334848 6335687 -135935757 - L1MB8 LINE L1 -78 6336 5530 1674 186 27 3 chr9 6335687 6335983 -135935461 - AluJo SINE Alu -9 303 1 9368 210 86 49 chr9 6335983 6337650 -135933794 - L1MB8 LINE L1 -884 5530 3927 2013 114 21 4 chr9 6337650 6337930 -135933514 + AluSc SINE Alu 3 287 -22 9368 210 86 49 chr9 6337930 6339127 -135932317 - L1MB8 LINE L1 -2487 3927 2776 246 32 0 0 chr9 6339127 6339158 -135932286 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 9368 210 86 49 chr9 6339158 6339442 -135932002 - L1MB8 LINE L1 -3638 2776 2504 270 56 0 0 chr9 6339442 6339478 -135931966 + (TTG)n Simple_repeat Simple_repeat 1 36 0 9368 210 86 49 chr9 6339478 6340427 -135931017 - L1MB8 LINE L1 -3910 2504 1162 670 286 18 23 chr9 6340546 6340717 -135930727 - MLT1I LTR MaLR -191 218 49 423 344 48 11 chr9 6340873 6341062 -135930382 + MIR SINE MIR 50 245 -17 1208 278 115 35 chr9 6341833 6342711 -135928733 + HAL1 LINE L1 586 1533 -974 281 273 61 18 chr9 6342793 6342958 -135928486 - L1MC5 LINE L1 -188 7773 7602 22 35 0 0 chr9 6343026 6343055 -135928389 + AT_rich Low_complexity Low_complexity 1 29 0 6490 40 0 0 chr9 6343055 6343828 -135927616 - L1PA5 LINE L1 -8 6146 5374 1557 39 20 0 chr9 6343827 6344031 -135927413 + L1PA5 LINE L1 5156 5363 -783 * 236 247 41 0 chr9 6344073 6344146 -135927298 + HAL1 LINE L1 2432 2507 0 23 92 0 0 chr9 6345654 6345719 -135925725 + AT_rich Low_complexity Low_complexity 1 65 0 248 241 96 0 chr9 6346086 6346169 -135925275 + L1MC/D LINE L1 5801 5891 -1917 187 272 136 0 chr9 6346841 6346922 -135924522 + MIR3 SINE MIR 89 180 -28 294 73 0 0 chr9 6347254 6347295 -135924149 + (TCCCC)n Simple_repeat Simple_repeat 5 45 0 1499 139 20 90 chr9 6347315 6347616 -135923828 - AluJb SINE Alu -32 280 1 2067 111 14 24 chr9 6347797 6348094 -135923350 + AluSg SINE Alu 1 294 -16 691 164 16 8 chr9 6348319 6348441 -135923003 - FLAM_A SINE Alu -10 123 1 324 275 84 35 chr9 6348492 6348774 -135922670 - L1MEc LINE L1 -4933 1659 1344 3311 105 91 36 chr9 6348908 6349034 -135922410 - LTR24C LTR ERV1 0 635 517 2009 123 27 0 chr9 6349034 6349326 -135922118 + AluSx SINE Alu 1 300 -12 2440 84 3 0 chr9 6349330 6349638 -135921806 + AluSx SINE Alu 1 309 -3 3311 105 91 36 chr9 6349638 6350108 -135921336 - LTR24C LTR ERV1 -120 515 1 21 36 0 0 chr9 6350183 6350211 -135921233 + AT_rich Low_complexity Low_complexity 1 28 0 200 259 61 61 chr9 6350569 6350716 -135920728 + L2 LINE L2 1964 2110 -1204 227 279 76 0 chr9 6350741 6350820 -135920624 - L2 LINE L2 -13 3300 3216 355 308 51 8 chr9 6350898 6351015 -135920429 + L2 LINE L2 3150 3271 -1 878 208 31 16 chr9 6351065 6351257 -135920187 - MER3 DNA MER1_type -8 201 7 812 292 78 25 chr9 6352413 6352727 -135918717 - HAL1 LINE L1 -76 2431 2080 1659 136 65 127 chr9 6352727 6353176 -135918268 - MER61B LTR ERV1 -4 421 1 812 292 78 25 chr9 6353176 6353350 -135918094 - HAL1 LINE L1 -427 2080 1917 2238 107 3 0 chr9 6353351 6353659 -135917785 - AluSp SINE Alu -4 309 1 21 0 0 0 chr9 6353727 6353748 -135917696 + AT_rich Low_complexity Low_complexity 1 21 0 306 0 0 0 chr9 6353820 6353854 -135917590 + (TG)n Simple_repeat Simple_repeat 2 35 0 39832 73 8 3 chr9 6354034 6360147 -135911297 - L1PA5 LINE L1 -8 6146 3 492 259 54 7 chr9 6360148 6360295 -135911149 - HAL1 LINE L1 -585 1922 1769 850 316 103 58 chr9 6360353 6361129 -135910315 - HAL1 LINE L1 -1693 814 4 21 0 0 0 chr9 6361731 6361752 -135909692 + AT_rich Low_complexity Low_complexity 1 21 0 433 215 69 15 chr9 6361846 6361976 -135909468 + L1ME3A LINE L1 5810 5946 -224 793 310 46 20 chr9 6362268 6362749 -135908695 + L2 LINE L2 2753 3313 0 437 289 234 15 chr9 6363178 6363379 -135908065 - MIR SINE MIR -13 249 5 209 356 0 14 chr9 6363475 6363548 -135907896 - L2 LINE L2 -50 3263 3192 286 287 130 9 chr9 6364425 6364533 -135906911 - L2 LINE L2 -2 3311 3191 2196 67 17 17 chr9 6364735 6365034 -135906410 - AluY SINE Alu -12 299 1 401 206 130 54 chr9 6365212 6365490 -135905954 - L1 LINE L1 -2365 3781 3465 286 98 61 0 chr9 6365491 6365573 -135905871 + (TA)n Simple_repeat Simple_repeat 2 88 0 2071 126 10 0 chr9 6365573 6365875 -135905569 - AluSg SINE Alu -5 305 1 279 291 45 8 chr9 6365885 6366019 -135905425 - L1 LINE L1 -2672 3474 3336 326 170 113 70 chr9 6366199 6366350 -135905094 - L1ME3 LINE L1 -287 5875 5733 422 310 55 30 chr9 6366354 6366683 -135904761 - L1MC4 LINE L1 -214 7828 7492 349 302 189 0 chr9 6367262 6367431 -135904013 - L1MC4 LINE L1 -546 7496 7296 888 257 81 40 chr9 6367753 6368123 -135903321 + L1MEc LINE L1 43 427 -5969 * 957 166 90 18 chr9 6368121 6368344 -135903100 + L1MEc LINE L1 996 1234 -5162 21 36 0 0 chr9 6368819 6368847 -135902597 + AT_rich Low_complexity Low_complexity 1 28 0 2242 141 49 33 chr9 6369098 6369523 -135901921 - Tigger2a DNA MER2_type -2 432 1 576 229 70 84 chr9 6369536 6369871 -135901573 - L1ME3A LINE L1 -333 5837 5514 189 0 0 0 chr9 6370017 6370038 -135901406 + (T)n Simple_repeat Simple_repeat 1 21 0 13668 68 15 6 chr9 6370124 6371890 -135899554 - HERVL-A1 LTR ERVL -3872 1782 1 3427 51 13 27 chr9 6371890 6372340 -135899104 - MLT2A1 LTR ERVL 0 444 1 1021 286 113 43 chr9 6372526 6373731 -135897713 - L1MEd LINE L1 -4656 1473 269 230 309 114 65 chr9 6374670 6374793 -135896651 - L2 LINE L2 -6 3307 3179 1102 145 56 23 chr9 6375279 6375493 -135895951 - AluJo SINE Alu -11 301 81 1783 139 100 9 chr9 6375908 6376239 -135895205 - MER46B DNA MER2_type 0 236 1 428 353 42 32 chr9 6376798 6376988 -135894456 - MIR3 SINE MIR -2 206 15 24 0 0 0 chr9 6377686 6377710 -135893734 + AT_rich Low_complexity Low_complexity 1 24 0 24 0 0 0 chr9 6377793 6377817 -135893627 + AT_rich Low_complexity Low_complexity 1 24 0 336 290 48 0 chr9 6377946 6378070 -135893374 + MER103 DNA DNA 34 163 -3 182 216 0 0 chr9 6380233 6380270 -135891174 + MIR3 SINE MIR 172 208 0 517 196 45 15 chr9 6380489 6380622 -135890822 - MIR3 SINE MIR -5 203 67 2500 74 6 3 chr9 6381236 6381548 -135889896 - AluSq SINE Alu 0 313 1 2109 103 4 0 chr9 6382845 6383126 -135888318 - AluSx SINE Alu -30 282 1 2169 113 17 0 chr9 6383906 6384207 -135887237 - AluSq SINE Alu -7 306 1 195 304 54 0 chr9 6384891 6384947 -135886497 - L2 LINE L2 -4 3268 3210 210 118 0 0 chr9 6385485 6385519 -135885925 + (TG)n Simple_repeat Simple_repeat 2 35 0 383 352 93 10 chr9 6385549 6385742 -135885702 - MIR SINE MIR -6 256 48 21 0 0 0 chr9 6385815 6385836 -135885608 + AT_rich Low_complexity Low_complexity 1 21 0 1901 121 10 17 chr9 6385916 6386206 -135885238 + AluSx SINE Alu 1 288 -24 28 0 0 0 chr9 6386283 6386311 -135885133 + AT_rich Low_complexity Low_complexity 1 28 0 1762 148 93 3 chr9 6386735 6387046 -135884398 - MER44D DNA MER2_type 0 609 1 2106 117 0 0 chr9 6387112 6387426 -135884018 + AluSx SINE Alu 1 314 0 217 372 64 11 chr9 6388995 6389089 -135882355 - L2 LINE L2 -4 3268 3170 448 372 202 2 chr9 6389191 6389613 -135881831 - L2 LINE L2 -209 3063 2550 410 250 44 127 chr9 6389940 6390201 -135881243 - L3 LINE CR1 -202 1375 1143 2358 96 0 13 chr9 6390201 6390514 -135880930 - AluSc SINE Alu 0 309 1 410 250 44 127 chr9 6390514 6390568 -135880876 - L3 LINE CR1 -434 1143 1086 306 305 130 37 chr9 6390713 6390959 -135880485 + L1MC4 LINE L1 7381 7649 -393 228 171 0 0 chr9 6390972 6391007 -135880437 - tRNA-Val-GTG tRNA tRNA -39 37 3 565 234 94 61 chr9 6391020 6391383 -135880061 + L1MC5 LINE L1 7551 7925 -36 205 211 0 0 chr9 6391430 6391468 -135879976 + L3 LINE CR1 1081 1118 -459 208 313 116 36 chr9 6391598 6391710 -135879734 + L3 LINE CR1 1384 1504 -73 2427 84 0 7 chr9 6392576 6392885 -135878559 - AluSg SINE Alu -3 307 1 21 36 0 0 chr9 6392972 6393000 -135878444 + AT_rich Low_complexity Low_complexity 1 28 0 282 296 112 18 chr9 6393020 6393189 -135878255 + L2 LINE L2 2356 2540 -774 206 218 18 36 chr9 6393857 6393912 -135877532 + L2 LINE L2 3242 3295 -18 380 300 140 0 chr9 6396551 6396701 -135874743 + MIR SINE MIR 86 256 -6 1993 134 3 0 chr9 6397528 6397812 -135873632 - AluSx SINE Alu -27 285 1 4593 111 22 4 chr9 6397825 6398540 -135872904 - L1PB1 LINE L1 -2 6149 5422 203 226 0 19 chr9 6398995 6399048 -135872396 + MIR SINE MIR 210 261 -1 2358 84 3 0 chr9 6399062 6399358 -135872086 - AluSp SINE Alu -16 297 1 745 253 107 9 chr9 6399371 6399596 -135871848 - MIR SINE MIR -14 248 2 1734 157 7 20 chr9 6399720 6400013 -135871431 + AluJo SINE Alu 6 294 -18 1334 142 6 120 chr9 6401959 6402318 -135869126 + Cheshire DNA MER1_type 2103 2420 0 2158 192 102 17 chr9 6402539 6403205 -135868239 - L1MB1 LINE L1 -28 6161 5436 1203 221 124 53 chr9 6403228 6403848 -135867596 - L1MC5 LINE L1 -52 7909 7246 34 0 0 0 chr9 6404646 6404680 -135866764 + AT_rich Low_complexity Low_complexity 1 34 0 320 356 27 20 chr9 6404983 6405132 -135866312 + MIR3 SINE MIR 38 187 -21 25 0 0 0 chr9 6408131 6408156 -135863288 + AT_rich Low_complexity Low_complexity 1 25 0 513 136 0 0 chr9 6408401 6408489 -135862955 - L1MB7 LINE L1 -217 5967 5880 573 198 190 12 chr9 6408504 6408761 -135862683 - L1MB7 LINE L1 -700 5484 5188 3338 206 154 29 chr9 6408970 6410171 -135861273 - L1MB7 LINE L1 -944 5202 3834 1663 200 7 0 chr9 6410171 6410461 -135860983 - AluJb SINE Alu -20 292 1 3338 206 154 29 chr9 6410461 6410518 -135860926 - L1MB7 LINE L1 -2312 3834 3786 11145 124 30 128 chr9 6410678 6413518 -135857926 + L1PA7 LINE L1 12 2570 -3576 8225 70 15 5 chr9 6413521 6415431 -135856013 + L1PA7 LINE L1 4217 6150 -4 229 308 162 0 chr9 6419257 6419374 -135852070 + MIR SINE MIR 20 155 -107 419 293 74 36 chr9 6420527 6421002 -135850442 + HAL1b LINE L1 153 645 -703 437 202 48 0 chr9 6421026 6421110 -135850334 - AluJb SINE Alu -22 290 203 226 171 0 0 chr9 6421137 6421178 -135850266 - Alu SINE Alu -33 269 229 1379 186 27 4 chr9 6421186 6421449 -135849995 - AluJo SINE Alu -43 269 1 829 98 0 0 chr9 6421641 6421753 -135849691 - AluSg/x SINE Alu -2 310 199 498 329 69 23 chr9 6421800 6422309 -135849135 + L1MDa LINE L1 2417 2953 -3587 582 176 30 30 chr9 6422328 6422459 -135848985 + L1ME2 LINE L1 6021 6151 -13 216 67 0 0 chr9 6422643 6422673 -135848771 + (GA)n Simple_repeat Simple_repeat 2 31 0 1740 174 46 17 chr9 6422678 6423029 -135848415 - MLT2D LTR ERVL -53 361 1 262 312 136 30 chr9 6423236 6423435 -135848009 - L2 LINE L2 -8 3305 3086 518 198 236 0 chr9 6424179 6424361 -135847083 + L1MCa LINE L1 2099 2323 -4103 * 7872 211 48 26 chr9 6424352 6426969 -135844475 + L1MC2 LINE L1 1840 4540 -1886 2362 95 7 0 chr9 6426969 6427275 -135844169 + AluSg SINE Alu 1 308 -2 7872 211 48 26 chr9 6427275 6427845 -135843599 + L1MC2 LINE L1 4540 5096 -1330 2431 169 122 19 chr9 6427833 6428519 -135842925 + L1MC2 LINE L1 5849 6610 -14 * 1507 151 77 49 chr9 6428519 6428804 -135842640 - AluJo SINE Alu -19 293 1 2431 169 122 19 chr9 6428804 6428816 -135842628 + L1MC2 LINE L1 6610 6619 -5 2454 84 0 0 chr9 6428839 6429138 -135842306 + AluSg SINE Alu 1 299 -11 2347 80 3 0 chr9 6429688 6429987 -135841457 - AluSp SINE Alu -13 300 1 717 243 109 0 chr9 6431025 6431227 -135840217 + MER58A DNA MER1_type 1 224 0 2208 116 0 3 chr9 6431864 6432165 -135839279 + AluSx SINE Alu 1 300 -12 2094 137 0 3 chr9 6433857 6434156 -135837288 - AluSx SINE Alu -13 299 2 769 119 0 0 chr9 6434397 6434533 -135836911 + AluSg/x SINE Alu 176 311 0 1785 161 0 39 chr9 6437900 6438211 -135833233 - AluJb SINE Alu -13 299 1 2177 128 0 0 chr9 6438935 6439239 -135832205 + AluSx SINE Alu 1 304 -8 735 148 17 9 chr9 6439477 6439592 -135831852 - FLAM_C SINE Alu -25 118 3 1696 137 76 4 chr9 6440208 6440490 -135830954 - AluJb SINE Alu 0 301 1 2378 48 10 0 chr9 6440501 6440791 -135830653 - AluY SINE Alu -18 293 1 517 265 53 20 chr9 6441024 6441175 -135830269 - L2 LINE L2 0 3313 3158 25 0 0 0 chr9 6442427 6442452 -135828992 + AT_rich Low_complexity Low_complexity 1 25 0 198 171 0 0 chr9 6442803 6442844 -135828600 + A-rich Low_complexity Low_complexity 1 41 0 296 304 78 48 chr9 6442954 6443184 -135828260 + L2 LINE L2 1739 1975 -1339 273 280 160 10 chr9 6443147 6443247 -135828197 - L2 LINE L2 -3 3269 3155 * 247 246 90 0 chr9 6444856 6444924 -135826520 - L1ME LINE L1 -213 5908 5848 1397 140 35 0 chr9 6444924 6445152 -135826292 - MER46A DNA MER2_type 0 236 1 247 246 90 0 chr9 6445152 6445205 -135826239 - L1ME LINE L1 -273 5848 5776 23 33 0 0 chr9 6445218 6445248 -135826196 + AT_rich Low_complexity Low_complexity 1 30 0 226 240 13 0 chr9 6445321 6445396 -135826048 + (TA)n Simple_repeat Simple_repeat 1 76 0 599 290 34 65 chr9 6445507 6445831 -135825613 + MLT1I LTR MaLR 93 406 -3 1881 132 44 14 chr9 6445932 6446227 -135825217 + AluSx SINE Alu 1 304 -8 302 234 0 0 chr9 6446252 6446329 -135825115 + L1MCc LINE L1 1386 1462 -4961 301 273 47 53 chr9 6446350 6446500 -135824944 + L1MCc LINE L1 1675 1823 -5108 288 306 16 15 chr9 6446527 6446680 -135824764 + L1MCc LINE L1 1816 2069 -4862 1763 219 91 34 chr9 6446702 6447327 -135824117 + L1MC4 LINE L1 6785 7445 -597 23 78 0 0 chr9 6447385 6447436 -135824008 + AT_rich Low_complexity Low_complexity 1 51 0 332 258 126 0 chr9 6447653 6447820 -135823624 + L1MC4 LINE L1 7634 7821 -221 413 218 78 62 chr9 6447837 6448016 -135823428 - L1M4 LINE L1 -2243 3903 3722 646 235 143 0 chr9 6448037 6448254 -135823190 + L1ME4a LINE L1 5585 5832 -338 268 328 9 69 chr9 6448254 6448370 -135823074 - MIR SINE MIR -130 132 24 2335 90 0 0 chr9 6448370 6448669 -135822775 - AluY SINE Alu -12 299 1 2385 72 0 7 chr9 6448669 6448961 -135822483 - AluSx SINE Alu -22 290 1 376 221 127 70 chr9 6449333 6449491 -135821953 - L2 LINE L2 -1317 1997 1831 622 179 19 0 chr9 6449539 6449645 -135821799 + FRAM SINE Alu 53 160 -16 565 265 99 0 chr9 6449651 6449832 -135821612 - L2 LINE L2 -1502 1812 1614 1882 179 10 0 chr9 6449905 6450212 -135821232 + AluJo SINE Alu 1 310 -2 374 288 167 1 chr9 6450236 6450415 -135821029 - L1MC/D LINE L1 -460 5661 5459 2220 189 42 14 chr9 6450476 6450751 -135820693 + L1MB8 LINE L1 5577 5874 -304 2490 126 22 38 chr9 6450751 6451203 -135820241 + MER65A LTR ERV1 1 445 0 2220 189 42 14 chr9 6451203 6451424 -135820020 + L1MB8 LINE L1 5874 6087 -91 2141 110 3 0 chr9 6451489 6451780 -135819664 + AluSx SINE Alu 1 292 -20 262 238 10 50 chr9 6451838 6451939 -135819505 + L1ME4a LINE L1 5936 6032 -89 1825 172 7 0 chr9 6453442 6453738 -135817706 + AluJb SINE Alu 1 298 -14 1234 29 0 7 chr9 6454279 6454419 -135817025 + MER85 DNA T2_type 1 139 0 1692 169 37 10 chr9 6454473 6454769 -135816675 + AluJb SINE Alu 1 304 -8 983 237 47 0 chr9 6454958 6455190 -135816254 + MIR SINE MIR 12 254 -8 856 137 0 0 chr9 6455762 6455879 -135815565 + AluJo/FLAM SINE Alu 1 117 -185 312 159 111 0 chr9 6455879 6455942 -135815502 - AluSp/q SINE Alu -2 301 232 1383 209 72 70 chr9 6456043 6456444 -135815000 - LTR40a LTR ERVL -95 424 23 867 286 133 29 chr9 6456498 6456875 -135814569 + LTR33 LTR ERVL 99 514 -7 341 284 54 27 chr9 6457021 6457169 -135814275 + L1M4 LINE L1 3792 3943 -2203 373 256 171 18 chr9 6457314 6457478 -135813966 + MER5A DNA MER1_type 1 189 0 898 98 81 0 chr9 6457492 6457615 -135813829 - FLAM_C SINE Alu 0 133 1 310 257 57 74 chr9 6457645 6457820 -135813624 - HAL1 LINE L1 -10 2497 2326 1853 96 146 0 chr9 6457977 6458238 -135813206 - AluSq SINE Alu -4 299 1 2376 74 0 36 chr9 6458319 6458628 -135812816 + AluY SINE Alu 1 298 -13 1718 120 32 0 chr9 6458724 6458974 -135812470 - AluSc SINE Alu -16 293 36 921 195 16 16 chr9 6459278 6459463 -135811981 - AluJo SINE Alu -7 305 121 27 49 0 0 chr9 6459799 6459840 -135811604 + AT_rich Low_complexity Low_complexity 1 41 0 2196 113 0 31 chr9 6460051 6460369 -135811075 + AluSx SINE Alu 3 310 -2 7172 187 132 8 chr9 6460495 6461905 -135809539 + L1PA13 LINE L1 1 1585 -5202 5868 107 53 2 chr9 6461908 6463205 -135808239 + L1PA13 LINE L1 4817 6163 0 1042 135 53 6 chr9 6464016 6464186 -135807258 - L1PB3 LINE L1 -1 6869 6692 12613 235 62 65 chr9 6464434 6465841 -135805603 - L1PB3 LINE L1 -164 6706 5296 2104 134 3 3 chr9 6465841 6466148 -135805296 - AluSq SINE Alu -6 307 1 12613 235 62 65 chr9 6466148 6467468 -135803976 - L1PB3 LINE L1 -1574 5296 3973 2006 133 0 44 chr9 6467468 6467785 -135803659 - AluSx SINE Alu -9 303 1 12613 235 62 65 chr9 6467785 6470189 -135801255 - L1PB3 LINE L1 -2897 3973 2682 2193 122 20 0 chr9 6470189 6470493 -135800951 - AluSx SINE Alu -2 310 1 12613 235 62 65 chr9 6470493 6473165 -135798279 - L1PB3 LINE L1 -4188 2682 3 255 384 58 0 chr9 6473645 6473731 -135797713 - MIR SINE MIR -90 118 28 1683 87 4 13 chr9 6473905 6474136 -135797308 + AluSq SINE Alu 44 272 -41 745 16 63 0 chr9 6474238 6474343 -135797101 - L1P1 LINE L1 -670 5484 5374 271 0 51 0 chr9 6474682 6474721 -135796723 + (TTTA)n Simple_repeat Simple_repeat 2 42 0 7584 22 0 0 chr9 6474725 6475583 -135795861 - L1PA3 LINE L1 0 6155 5298 * 41614 71 6 2 chr9 6475578 6480946 -135790498 - L1P LINE L1 -756 5390 5 574 267 37 19 chr9 6482984 6483145 -135788299 - MIR SINE MIR -93 169 6 359 262 19 19 chr9 6483423 6483530 -135787914 - MIR SINE MIR -26 236 130 3393 60 2 10 chr9 6484415 6484830 -135786614 + L1PA5 LINE L1 5743 6154 0 379 231 161 0 chr9 6485071 6485201 -135786243 - L1MC5 LINE L1 -48 7913 7763 602 180 9 0 chr9 6485907 6486018 -135785426 - Charlie4 DNA MER1_type -34 1927 1816 391 298 7 64 chr9 6486706 6486847 -135784597 + MLT1I LTR MaLR 22 154 -255 198 167 0 0 chr9 6486849 6486885 -135784559 + CT-rich Low_complexity Low_complexity 2 37 0 728 171 0 0 chr9 6486895 6487000 -135784444 - FLAM_C SINE Alu -21 122 18 739 266 41 18 chr9 6487037 6487259 -135784185 + MLT1I LTR MaLR 184 450 0 315 235 12 12 chr9 6487306 6487387 -135784057 - MIR SINE MIR -110 152 72 180 225 25 0 chr9 6487739 6487779 -135783665 + MER5B DNA MER1_type 13 53 -125 237 311 76 98 chr9 6487989 6488266 -135783178 + L2 LINE L2 2924 3194 -78 21 0 0 0 chr9 6488294 6488315 -135783129 + GC_rich Low_complexity Low_complexity 1 21 0 546 242 95 38 chr9 6488688 6488899 -135782545 - L2 LINE L2 0 3313 3091 180 0 0 0 chr9 6489208 6489228 -135782216 + (TTG)n Simple_repeat Simple_repeat 2 21 0 1101 216 24 111 chr9 6489236 6489607 -135781837 + MSTD LTR MaLR 1 339 -57 514 147 10 10 chr9 6489607 6489709 -135781735 + CT-rich Low_complexity Low_complexity 3 104 0 5204 91 11 14 chr9 6489722 6490418 -135781026 - L1PA13 LINE L1 -14 6149 5456 507 100 0 0 chr9 6490419 6490489 -135780955 + MSTD LTR MaLR 388 457 0 1737 157 0 35 chr9 6490637 6490923 -135780521 - AluJo SINE Alu -36 276 1 365 280 107 33 chr9 6491504 6491654 -135779790 + LTR16C LTR ERVL 322 482 -9 1318 81 27 27 chr9 6492450 6492635 -135778809 + AluY SINE Alu 1 185 -126 1639 170 3 39 chr9 6493247 6493559 -135777885 + AluJo SINE Alu 1 301 -11 2032 95 4 0 chr9 6493572 6493835 -135777609 - AluSq SINE Alu -6 307 44 1616 267 42 56 chr9 6494065 6495121 -135776323 - HERVI LTR ERV1 -6646 1139 23 3738 110 12 2 chr9 6495147 6495655 -135775789 - LTR10D LTR ERV1 0 513 1 220 313 163 0 chr9 6495932 6496079 -135775365 - L2 LINE L2 -1226 2088 1918 235 248 86 68 chr9 6496417 6496470 -135774974 - MER103 DNA DNA -37 129 78 2224 118 0 0 chr9 6496470 6496774 -135774670 - AluSx SINE Alu -8 304 1 235 248 86 68 chr9 6496774 6496837 -135774607 - MER103 DNA DNA -88 78 11 2335 93 3 0 chr9 6497454 6497756 -135773688 - AluY SINE Alu -8 303 1 2058 105 3 37 chr9 6497986 6498316 -135773128 - AluY SINE Alu 0 320 1 1853 96 146 0 chr9 6498397 6498658 -135772786 + AluSq SINE Alu 1 299 -4 310 257 57 74 chr9 6498815 6498990 -135772454 + HAL1 LINE L1 2326 2497 -10 898 98 81 0 chr9 6499020 6499143 -135772301 + FLAM_C SINE Alu 1 133 0 373 256 171 18 chr9 6499157 6499321 -135772123 - MER5A DNA MER1_type 0 189 1 23 68 0 0 chr9 6499370 6499414 -135772030 + AT_rich Low_complexity Low_complexity 1 44 0 341 284 54 27 chr9 6499466 6499614 -135771830 - L1M4 LINE L1 -2203 3943 3792 867 286 133 29 chr9 6499760 6500137 -135771307 - LTR33 LTR ERVL -7 514 99 1482 208 72 67 chr9 6500191 6500610 -135770834 + LTR40a LTR ERVL 23 443 -76 829 219 16 37 chr9 6500731 6500758 -135770686 - L1P LINE L1 -2652 3494 3468 2061 86 23 36 chr9 6500758 6501061 -135770383 + AluY SINE Alu 1 299 -12 829 219 16 37 chr9 6501061 6501275 -135770169 - L1P LINE L1 -2678 3468 3258 345 202 218 24 chr9 6501276 6501400 -135770044 + LTR50 LTR ERVL 586 733 -62 216 266 16 0 chr9 6501446 6501510 -135769934 + (TCTA)n Simple_repeat Simple_repeat 1 65 0 2273 112 3 0 chr9 6501541 6501845 -135769599 - AluSc SINE Alu -4 305 1 1139 213 46 59 chr9 6502042 6502347 -135769097 - LTR8A LTR ERV1 0 727 427 316 271 81 27 chr9 6503386 6503589 -135767855 + L1ME4a LINE L1 5878 6095 -26 2236 105 10 3 chr9 6503589 6503894 -135767550 - AluSq SINE Alu -6 307 1 316 271 81 27 chr9 6503894 6503911 -135767533 + L1ME4a LINE L1 6095 6110 -11 428 168 193 0 chr9 6504204 6504323 -135767121 + MIR SINE MIR 121 262 0 2149 55 0 8 chr9 6505947 6506235 -135765209 + AluY SINE Alu 27 312 0 7241 215 35 11 chr9 6506246 6506672 -135764772 + L1 LINE L1 3511 3925 -2221 2236 139 39 28 chr9 6506672 6507032 -135764412 - THE1B LTR MaLR 0 364 1 7241 215 35 11 chr9 6507032 6508242 -135763202 + L1 LINE L1 3925 5187 -959 4724 128 44 33 chr9 6508243 6509056 -135762388 + L1PA16 LINE L1 5340 6161 -5 400 163 12 5 chr9 6509416 6509673 -135761771 + AluJb SINE Alu 17 307 -5 795 209 12 31 chr9 6509772 6509957 -135761487 - AluJo SINE Alu 0 312 127 926 223 9 38 chr9 6509991 6510202 -135761242 - MER3 DNA MER1_type 0 209 5 622 241 28 47 chr9 6510203 6510415 -135761029 + L1MC5 LINE L1 7706 7913 -48 2296 166 21 23 chr9 6510568 6511013 -135760431 - MSTB1 LTR MaLR 0 397 1 385 286 0 0 chr9 6511096 6511194 -135760250 - L1MC4a LINE L1 -1965 5843 5746 679 325 94 22 chr9 6511253 6511656 -135759788 - L2 LINE L2 -702 2612 2181 221 125 0 42 chr9 6512478 6512526 -135758918 + (TTTTTA)n Simple_repeat Simple_repeat 1 46 0 360 344 51 28 chr9 6512883 6513098 -135758346 - MLT1J LTR MaLR -291 220 1 534 306 124 6 chr9 6513100 6513414 -135758030 + HAL1 LINE L1 1726 2076 -431 3774 106 10 8 chr9 6513419 6513931 -135757513 - LTR10D LTR ERV1 0 513 1 37184 187 12 21 chr9 6513947 6520635 -135750809 - HERVI LTR ERV1 -16 7769 1144 1630 264 56 55 chr9 6520965 6522037 -135749407 - HERVI LTR ERV1 -6614 1171 23 3742 110 12 2 chr9 6522063 6522571 -135748873 - LTR10D LTR ERV1 0 513 1 220 313 163 0 chr9 6522848 6522995 -135748449 - L2 LINE L2 -1226 2088 1918 235 248 86 68 chr9 6523333 6523386 -135748058 - MER103 DNA DNA -37 129 78 2224 118 0 0 chr9 6523386 6523690 -135747754 - AluSx SINE Alu -8 304 1 235 248 86 68 chr9 6523690 6523753 -135747691 - MER103 DNA DNA -88 78 11 2283 103 3 0 chr9 6524370 6524672 -135746772 - AluY SINE Alu -8 303 1 1948 108 7 51 chr9 6524902 6525234 -135746210 - AluSg SINE Alu 0 319 1 430 186 150 35 chr9 6525529 6525642 -135745802 + FLAM_C SINE Alu 1 126 -7 1317 177 45 78 chr9 6526523 6526599 -135744845 - LTR37A LTR ERV1 0 426 349 1739 167 38 0 chr9 6526599 6526887 -135744557 - AluJo SINE Alu -13 299 1 1317 177 45 78 chr9 6526887 6527233 -135744211 - LTR37A LTR ERV1 -77 349 18 4104 126 76 35 chr9 6527484 6528233 -135743211 - LTR1 LTR ERV1 0 785 6 2121 131 0 0 chr9 6529038 6529344 -135742100 + AluSq SINE Alu 1 306 0 258 269 106 14 chr9 6529351 6529492 -135741952 - L1ME4a LINE L1 -1 6120 5967 1080 201 44 97 chr9 6529583 6529996 -135741448 + L1M4 LINE L1 4924 5314 -832 331 183 73 12 chr9 6530222 6530304 -135741140 - MLT1H LTR MaLR 0 549 463 1169 191 9 23 chr9 6530604 6530824 -135740620 + MER20 DNA MER1_type 3 219 0 308 253 48 0 chr9 6530831 6530914 -135740530 - MLT1H LTR MaLR -462 87 1 1971 138 13 7 chr9 6531416 6531720 -135739724 + AluJb SINE Alu 1 306 -6 1040 165 41 28 chr9 6531817 6532035 -135739409 + AluJo SINE Alu 87 307 -5 534 241 13 57 chr9 6532386 6532544 -135738900 - LTR67 LTR ERVL -14 543 393 437 295 36 36 chr9 6532687 6532853 -135738591 - LTR67 LTR ERVL -369 188 23 1347 265 23 8 chr9 6533500 6533851 -135737593 + LTR16A LTR ERVL 89 444 -6 502 319 101 4 chr9 6533866 6534123 -135737321 - MLT1J LTR MaLR -2 509 228 1051 140 22 22 chr9 6534381 6534559 -135736885 - LTR8A LTR ERV1 -317 410 233 925 174 11 17 chr9 6534560 6534738 -135736706 + LTR28 LTR ERV1 2 178 -842 261 132 0 0 chr9 6534715 6534753 -135736691 + MER61B LTR ERV1 102 139 -286 * 1173 167 13 107 chr9 6534835 6535134 -135736310 + LTR27 LTR ERV1 364 634 -2 972 179 19 61 chr9 6535139 6535351 -135736093 - LTR8A LTR ERV1 -491 236 34 1665 40 0 5 chr9 6536478 6536678 -135734766 + MLT2A1 LTR ERVL 2 200 -244 41354 75 10 5 chr9 6536679 6542417 -135729027 + HERVL-A1 LTR ERVL 33 5756 -8 3475 76 32 5 chr9 6542418 6542809 -135728635 + MLT2A1 LTR ERVL 1 407 -37 225 0 0 0 chr9 6542809 6542834 -135728610 + (TA)n Simple_repeat Simple_repeat 1 25 0 3475 76 32 5 chr9 6542834 6542874 -135728570 + MLT2A1 LTR ERVL 407 444 0 27 0 0 0 chr9 6542990 6543017 -135728427 + AT_rich Low_complexity Low_complexity 1 27 0 432 271 160 27 chr9 6543049 6543237 -135728207 + MIR SINE MIR 48 260 -2 1158 218 40 0 chr9 6543488 6543713 -135727731 + L1PB4 LINE L1 5921 6154 -2 1187 197 165 76 chr9 6543998 6544093 -135727351 - LTR50 LTR ERVL -8 787 702 192 40 0 0 chr9 6544093 6544118 -135727326 + (CAAA)n Simple_repeat Simple_repeat 3 27 0 1187 197 165 76 chr9 6544118 6544653 -135726791 - LTR50 LTR ERVL -93 702 11 24 53 0 0 chr9 6545092 6545130 -135726314 + AT_rich Low_complexity Low_complexity 1 38 0 2403 90 0 6 chr9 6545131 6545442 -135726002 - AluY SINE Alu -2 309 1 1492 163 63 11 chr9 6545444 6545714 -135725730 - AluJo SINE Alu -26 286 3 581 309 82 0 chr9 6545768 6545988 -135725456 - MIR SINE MIR -2 260 23 422 114 0 29 chr9 6547292 6547362 -135724082 + L1PB4 LINE L1 6087 6154 -2 210 167 0 0 chr9 6548293 6548329 -135723115 - MER91B DNA MER1_type -142 48 13 424 149 7 41 chr9 6548487 6548623 -135722821 + MER53 DNA DNA 3 189 0 1905 190 36 8 chr9 6549209 6549655 -135721789 + MER89 LTR ERV1 1 559 0 431 367 25 17 chr9 6550014 6550251 -135721193 + MIR SINE MIR 24 262 0 7985 166 135 15 chr9 6551282 6552849 -135718595 + MER52A LTR ERV1 1 1755 0 2181 84 28 0 chr9 6553021 6553306 -135718138 - L1PB1 LINE L1 -1 6150 5858 2169 100 4 4 chr9 6553310 6553614 -135717830 + AluSq SINE Alu 5 308 0 239 167 0 0 chr9 6553715 6553751 -135717693 - L1PB1 LINE L1 -297 5854 5819 2470 84 0 3 chr9 6553751 6554061 -135717383 - AluY SINE Alu -2 309 1 2331 131 8 11 chr9 6554087 6554446 -135716998 - THE1B LTR MaLR -1 363 6 1807 256 43 4 chr9 6554470 6554963 -135716481 - L1M4 LINE L1 -1018 5128 4617 2155 123 0 0 chr9 6554974 6555266 -135716178 - AluSg SINE Alu -18 292 1 344 296 20 29 chr9 6555646 6555802 -135715642 - MIR SINE MIR -36 172 21 1939 132 40 0 chr9 6556806 6557102 -135714342 + AluSx SINE Alu 5 312 0 1376 171 38 3 chr9 6557285 6557577 -135713867 - L1MB7 LINE L1 0 6184 5883 233 195 12 24 chr9 6557882 6557964 -135713480 + (TAA)n Simple_repeat Simple_repeat 1 81 0 285 267 23 0 chr9 6558580 6558666 -135712778 - MER69 DNA AcHobo -1727 799 712 27 0 0 0 chr9 6560077 6560104 -135711340 + AT_rich Low_complexity Low_complexity 1 27 0 563 196 34 121 chr9 6560114 6560316 -135711128 + L1MC5 LINE L1 7452 7601 -360 1831 154 21 7 chr9 6560316 6560602 -135710842 + AluJo SINE Alu 1 290 -22 563 196 34 121 chr9 6560602 6560813 -135710631 + L1MC5 LINE L1 7601 7829 -132 195 42 0 0 chr9 6562705 6562729 -135708715 + (TTCA)n Simple_repeat Simple_repeat 4 27 0 3915 155 39 33 chr9 6562738 6563144 -135708300 + L1MB4 LINE L1 5174 5576 -604 2222 100 0 3 chr9 6563144 6563435 -135708009 + AluSc SINE Alu 1 290 -19 3915 155 39 33 chr9 6563435 6563762 -135707682 + L1MB4 LINE L1 5576 5926 -254 2427 173 7 9 chr9 6563762 6564189 -135707255 - MSTB LTR MaLR 0 426 1 3915 155 39 33 chr9 6564189 6564373 -135707071 + L1MB4 LINE L1 5926 6107 -73 512 325 75 9 chr9 6564450 6564662 -135706782 - MIR SINE MIR -31 231 6 25 0 0 0 chr9 6565082 6565107 -135706337 + AT_rich Low_complexity Low_complexity 1 25 0 225 69 0 0 chr9 6565964 6565993 -135705451 + U2 snRNA snRNA 1 29 -159 1018 252 35 22 chr9 6566021 6566422 -135705022 + L1MC5 LINE L1 6968 7373 -588 369 284 29 54 chr9 6566474 6566678 -135704766 + L1ME3A LINE L1 5963 6161 -9 2502 174 72 30 chr9 6567012 6567024 -135704420 + L1MB5 LINE L1 5566 5576 -598 1679 118 4 12 chr9 6567024 6567269 -135704175 + AluSx SINE Alu 38 280 -32 297 0 0 0 chr9 6567270 6567303 -135704141 + (CAAA)n Simple_repeat Simple_repeat 2 34 0 2502 174 72 30 chr9 6567303 6567856 -135703588 + L1MB5 LINE L1 5575 6157 -17 4628 170 6 20 chr9 6567876 6568850 -135702594 + L1P LINE L1 3037 3996 -2150 604 284 83 31 chr9 6569179 6569408 -135702036 - MIR SINE MIR -21 241 1 198 247 62 49 chr9 6569408 6569441 -135702003 - MER5A DNA MER1_type -148 41 8 600 226 104 28 chr9 6570135 6570347 -135701097 + MLT1H LTR MaLR 3 230 -319 323 163 24 122 chr9 6570429 6570552 -135700892 + MLT1H LTR MaLR 426 536 -13 187 369 131 8 chr9 6570963 6571085 -135700359 + L2 LINE L2 3136 3272 0 249 33 0 0 chr9 6571608 6571638 -135699806 + (TG)n Simple_repeat Simple_repeat 1 30 0 1742 149 3 11 chr9 6571649 6571931 -135699513 - AluJb SINE Alu -32 280 1 197 345 9 52 chr9 6572958 6573074 -135698370 + L3 LINE CR1 1458 1568 -9 40151 36 26 2 chr9 6573232 6579235 -135692209 + L1PA2 LINE L1 4 6155 0 669 239 25 50 chr9 6579501 6579702 -135691742 - MIR SINE MIR -2 260 65 203 152 0 0 chr9 6580927 6580960 -135690484 + (TTCA)n Simple_repeat Simple_repeat 1 33 0 1986 130 52 30 chr9 6581061 6581391 -135690053 - MER1B DNA MER1_type 0 337 1 269 100 0 0 chr9 6581466 6581506 -135689938 - MLT1I LTR MaLR -272 137 98 317 225 130 0 chr9 6581515 6581653 -135689791 + L1MEc LINE L1 1599 1754 -4642 25 0 0 0 chr9 6581780 6581805 -135689639 + AT_rich Low_complexity Low_complexity 1 25 0 306 197 29 117 chr9 6581871 6582008 -135689436 + L1M4 LINE L1 4562 4686 -1460 22 70 0 0 chr9 6582233 6582276 -135689168 + AT_rich Low_complexity Low_complexity 1 43 0 439 183 83 33 chr9 6582314 6582434 -135689010 - L1MC5 LINE L1 -48 7913 7788 8465 152 29 4 chr9 6582434 6583896 -135687548 - ERVL-B1 LTR ERVL -2210 3554 2057 2953 170 68 47 chr9 6583923 6584946 -135686498 - MER21A LTR ERV1 -19 912 26 9970 187 43 18 chr9 6584992 6585746 -135685698 - ERVL-B1 LTR ERVL -3711 2053 1320 1191 210 78 49 chr9 6585746 6586131 -135685313 + MSTD LTR MaLR 1 396 0 9970 187 43 18 chr9 6586131 6586760 -135684684 - ERVL-B1 LTR ERVL -4444 1320 709 2459 131 31 5 chr9 6586760 6587148 -135684296 + MER48 LTR ERV1 1 398 0 9970 187 43 18 chr9 6587148 6587764 -135683680 - ERVL-B1 LTR ERVL -5055 709 2 1699 181 151 54 chr9 6587771 6588235 -135683209 - MLT2B1 LTR ERVL -6 514 6 986 103 19 0 chr9 6588235 6588391 -135683053 + L1MB8 LINE L1 5737 5895 -283 320 305 59 0 chr9 6588623 6588741 -135682703 + L2 LINE L2 1879 2003 -1311 225 344 84 7 chr9 6588774 6588928 -135682516 - MLT1L LTR MaLR -67 548 383 10762 190 30 36 chr9 6588987 6590639 -135680805 + L1MB3 LINE L1 266 1926 -4456 2758 112 57 69 chr9 6590639 6591164 -135680280 - LTR44 LTR ERV1 0 519 1 2154 138 0 0 chr9 6591171 6591482 -135679962 - AluSx SINE Alu -1 311 1 10762 190 30 36 chr9 6591482 6592107 -135679337 + L1MB3 LINE L1 1932 2559 -3823 1935 149 7 3 chr9 6592107 6592396 -135679048 - AluJb SINE Alu -20 292 3 10762 190 30 36 chr9 6592396 6593118 -135678326 + L1MB3 LINE L1 2559 3284 -3098 2023 165 7 0 chr9 6593118 6593427 -135678017 + AluJb SINE Alu 1 311 -1 10762 190 30 36 chr9 6593427 6595611 -135675833 + L1MB3 LINE L1 3284 5424 -958 1746 170 0 33 chr9 6595740 6595897 -135675547 - AluJo SINE Alu -22 290 146 243 0 0 0 chr9 6595897 6595924 -135675520 + (TTCC)n Simple_repeat Simple_repeat 3 29 0 1746 170 0 33 chr9 6595924 6596066 -135675378 - AluJo SINE Alu -166 146 1 4250 165 27 40 chr9 6596535 6597497 -135673947 + L1MB3 LINE L1 5424 6374 -45 2293 98 0 10 chr9 6597497 6597802 -135673642 + AluSx SINE Alu 1 302 -10 4250 165 27 40 chr9 6597802 6597846 -135673598 + L1MB3 LINE L1 6374 6417 -2 553 264 41 86 chr9 6598018 6598598 -135672846 - L1MEd LINE L1 -4871 1248 695 180 152 0 0 chr9 6598681 6598714 -135672730 + (TCTCTG)n Simple_repeat Simple_repeat 2 34 0 385 336 69 83 chr9 6599127 6599622 -135671822 + L2 LINE L2 2589 3073 -199 2212 123 3 7 chr9 6599622 6599931 -135671513 - AluSx SINE Alu -4 308 1 385 336 69 83 chr9 6599931 6600129 -135671315 + L2 LINE L2 3073 3272 0 207 200 0 0 chr9 6600545 6600580 -135670864 + (TG)n Simple_repeat Simple_repeat 2 36 0 281 211 0 0 chr9 6600792 6600863 -135670581 - L1ME LINE L1 -303 5818 5748 831 240 159 0 chr9 6600867 6601075 -135670369 - MIR SINE MIR -21 241 1 636 280 13 0 chr9 6601166 6601316 -135670128 + MIR SINE MIR 15 166 -96 315 49 0 0 chr9 6601433 6601474 -135669970 + (A)n Simple_repeat Simple_repeat 1 41 0 253 234 106 0 chr9 6601905 6601999 -135669445 - MIR SINE MIR 0 262 159 216 0 0 0 chr9 6602038 6602062 -135669382 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 347 198 242 0 chr9 6602064 6602155 -135669289 - FLAM_A SINE Alu -17 116 4 243 273 26 39 chr9 6602155 6602232 -135669212 - MIR SINE MIR -145 117 42 211 262 0 0 chr9 6602298 6602340 -135669104 - MIR3 SINE MIR -17 191 150 309 213 12 12 chr9 6602736 6602816 -135668628 - MER116 DNA Mariner 0 80 1 1153 160 0 55 chr9 6604439 6604482 -135666962 + AluJo SINE Alu 91 135 -177 2556 43 0 3 chr9 6604482 6604782 -135666662 + AluY SINE Alu 1 299 -12 1153 160 0 55 chr9 6604782 6604957 -135666487 + AluJo SINE Alu 135 297 -15 654 242 0 0 chr9 6605159 6605287 -135666157 + FLAM_A SINE Alu 3 130 -3 405 307 130 31 chr9 6606638 6606957 -135664487 + HAL1b LINE L1 123 379 -969 350 213 36 169 chr9 6606967 6607192 -135664252 - MLT1L LTR MaLR 0 615 421 301 308 119 6 chr9 6607327 6607486 -135663958 + MLT1J LTR MaLR 2 178 -333 985 200 60 113 chr9 6607495 6607865 -135663579 + MLT2D LTR ERVL 1 350 -64 211 177 32 0 chr9 6607881 6607943 -135663501 + (TA)n Simple_repeat Simple_repeat 2 65 0 278 206 151 0 chr9 6608062 6608135 -135663309 + MLT1L LTR MaLR 311 394 -221 509 305 86 12 chr9 6608315 6608571 -135662873 - MLT1L LTR MaLR -340 275 1 2481 125 24 5 chr9 6609088 6609505 -135661939 - LTR24C LTR ERV1 -210 425 1 726 364 21 9 chr9 6609703 6610137 -135661307 + L1M3a LINE L1 14 452 -5503 15989 32 1 1 chr9 6610961 6613009 -135658435 + L1P LINE L1 1547 3595 -2551 957 166 67 46 chr9 6613901 6613970 -135657474 + L1MA8 LINE L1 6002 6068 -223 2514 66 3 0 chr9 6613970 6614272 -135657172 + AluY SINE Alu 1 303 -8 957 166 67 46 chr9 6614272 6614428 -135657016 + L1MA8 LINE L1 6068 6237 -54 267 31 0 0 chr9 6614428 6614460 -135656984 + (TA)n Simple_repeat Simple_repeat 1 32 0 957 166 67 46 chr9 6614460 6614517 -135656927 + L1MA8 LINE L1 6237 6291 0 465 356 56 0 chr9 6614901 6615081 -135656363 + L2 LINE L2 2811 3000 -313 1757 48 5 0 chr9 6615095 6615301 -135656143 - AluY SINE Alu -13 298 92 336 322 59 8 chr9 6615423 6615541 -135655903 + MIR3 SINE MIR 10 133 -75 2293 105 7 0 chr9 6615901 6616207 -135655237 + AluSp SINE Alu 1 308 -5 366 183 0 0 chr9 6616394 6616465 -135654979 + (CA)n Simple_repeat Simple_repeat 2 72 0 194 259 65 111 chr9 6616541 6616649 -135654795 + MER5A DNA MER1_type 65 167 -22 283 222 43 103 chr9 6616736 6616853 -135654591 + MIR SINE MIR 71 180 -82 304 204 46 125 chr9 6617063 6617215 -135654229 - MER112 DNA MER1_type -1 259 120 2533 168 95 6 chr9 6617239 6617744 -135653700 - MER44D DNA MER2_type 0 605 1 463 138 38 0 chr9 6617972 6618052 -135653392 + MER44D DNA MER2_type 575 657 -48 386 365 28 38 chr9 6618523 6618776 -135652668 - MIR SINE MIR -2 260 8 314 281 94 23 chr9 6619902 6620030 -135651414 - MIR SINE MIR -20 242 106 211 267 0 40 chr9 6620242 6620317 -135651127 - L2 LINE L2 -6 3307 3236 * 334 233 165 0 chr9 6620313 6620416 -135651028 + MIR SINE MIR 13 132 -130 1091 90 0 0 chr9 6620526 6620660 -135650784 - AluSq/x SINE Alu -179 134 1 22 0 0 0 chr9 6620783 6620805 -135650639 + AT_rich Low_complexity Low_complexity 1 22 0 28 48 0 0 chr9 6622175 6622217 -135649227 + AT_rich Low_complexity Low_complexity 1 42 0 497 321 65 11 chr9 6622275 6622459 -135648985 + MIR SINE MIR 1 194 -68 1550 145 4 4 chr9 6623053 6623281 -135648163 - AluSx SINE Alu -84 228 1 1584 137 8 16 chr9 6623429 6623684 -135647760 + AluSc SINE Alu 1 253 -56 189 257 119 79 chr9 6625798 6625899 -135645545 - MIR SINE MIR -147 115 11 480 247 100 32 chr9 6626105 6626315 -135645129 - MIR SINE MIR 0 262 38 4085 241 75 21 chr9 6626458 6628083 -135643361 + L1M3f LINE L1 539 2242 -4086 2250 128 88 7 chr9 6628083 6628491 -135642953 + L1MA4 LINE L1 5849 6289 -11 477 255 101 64 chr9 6628649 6628933 -135642511 + L1M3f LINE L1 3255 3527 -2801 1793 167 10 10 chr9 6628933 6629233 -135642211 + AluJo SINE Alu 1 300 -12 236 77 26 0 chr9 6629233 6629272 -135642172 + (TA)n Simple_repeat Simple_repeat 2 41 0 477 255 101 64 chr9 6629272 6629398 -135642046 + L1M3f LINE L1 3526 3672 -2656 800 177 6 55 chr9 6629412 6629593 -135641851 + MLT1D LTR MaLR 17 188 -317 2528 165 19 39 chr9 6629593 6630108 -135641336 + MLT1D LTR MaLR 1 505 0 40618 35 23 1 chr9 6630136 6636156 -135635288 - L1PA3 LINE L1 0 6155 3 475 275 105 18 chr9 6636261 6636595 -135634849 + L1M3f LINE L1 3802 4164 -2164 592 337 102 38 chr9 6636642 6637177 -135634267 - L2 LINE L2 -2 3270 2703 365 242 25 25 chr9 6637435 6637555 -135633889 + LTR33 LTR ERVL 402 521 0 518 276 19 26 chr9 6637565 6637721 -135633723 - L2 LINE L2 -596 2718 2564 1504 173 15 11 chr9 6637729 6638130 -135633314 + MER76 LTR ERV 1 466 -222 358 164 45 0 chr9 6638174 6638241 -135633203 + MER76 LTR ERV 590 659 -29 638 312 41 54 chr9 6638242 6638684 -135632760 - L2 LINE L2 -744 2570 2135 180 250 0 0 chr9 6638817 6638853 -135632591 + L2 LINE L2 3220 3255 -17 322 119 237 0 chr9 6639223 6639282 -135632162 - THE1B LTR MaLR 0 375 303 1027 146 0 0 chr9 6639284 6639465 -135631979 + AluSg/x SINE Alu 134 314 0 219 167 0 0 chr9 6639485 6639527 -135631917 + GA-rich Low_complexity Low_complexity 4 45 0 2098 116 0 0 chr9 6639540 6639842 -135631602 - THE1B LTR MaLR -62 302 1 286 323 222 35 chr9 6640049 6640247 -135631197 + MIR SINE MIR 20 254 -8 1321 174 0 21 chr9 6641037 6641273 -135630171 + AluJo SINE Alu 70 300 -12 202 267 0 0 chr9 6641628 6641673 -135629771 + (CAG)n Simple_repeat Simple_repeat 3 47 0 628 213 90 62 chr9 6641894 6642105 -135629339 + MIR SINE MIR 40 256 -6 1591 151 7 60 chr9 6642493 6642813 -135628631 - AluJb SINE Alu 0 304 1 264 353 88 0 chr9 6643054 6643190 -135628254 - MIR3 SINE MIR -5 203 56 235 286 0 16 chr9 6643528 6643591 -135627853 - MIR SINE MIR -127 81 20 1688 148 20 67 chr9 6644029 6644435 -135627009 - L1MB8 LINE L1 -6 6172 5786 1456 173 24 0 chr9 6644438 6644733 -135626711 - L1MB8 LINE L1 -538 5646 5345 1186 277 54 12 chr9 6644740 6645242 -135626202 - L1M4c LINE L1 -4738 1646 1124 1625 256 113 35 chr9 6645246 6645780 -135625664 + L1ME LINE L1 89 580 -5500 2064 144 3 0 chr9 6645780 6646071 -135625373 + AluSx SINE Alu 1 292 -20 1625 256 113 35 chr9 6646071 6646717 -135624727 + L1ME LINE L1 580 1362 -4718 2833 6 15 3 chr9 6646740 6647068 -135624376 + L1PA3 LINE L1 5824 6155 0 183 42 0 0 chr9 6647136 6647160 -135624284 + (TAAA)n Simple_repeat Simple_repeat 1 24 0 334 215 47 0 chr9 6647168 6647275 -135624169 + L1ME LINE L1 1403 1514 -4566 2495 191 57 78 chr9 6647887 6648593 -135622851 - LTR8 LTR ERV1 0 691 1 1939 135 49 0 chr9 6649786 6650074 -135621370 + AluSx SINE Alu 5 306 -6 283 282 18 0 chr9 6650575 6650685 -135620759 + LTR33 LTR ERVL 4 115 -406 573 238 42 0 chr9 6651098 6651241 -135620203 + MLT1D LTR MaLR 355 503 -2 1629 115 125 16 chr9 6652288 6652593 -135618851 - MER44D DNA MER2_type -1 608 1 3676 162 19 0 chr9 6653775 6654423 -135617021 + L1MB5 LINE L1 5515 6174 0 4356 213 36 30 chr9 6654455 6654843 -135616601 - L1M4 LINE L1 -649 6023 5639 1578 194 40 0 chr9 6654843 6655121 -135616323 + AluJb SINE Alu 9 297 -15 4356 213 36 30 chr9 6655121 6656100 -135615344 - L1M4 LINE L1 -1033 5639 4648 207 0 0 0 chr9 6656100 6656123 -135615321 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 4356 213 36 30 chr9 6656123 6656190 -135615254 - L1M4 LINE L1 -2024 4648 4583 25554 87 7 6 chr9 6656194 6661618 -135609826 + L1PA7 LINE L1 1377 7588 -4 203 0 37 0 chr9 6661644 6661671 -135609773 + (CAAA)n Simple_repeat Simple_repeat 2 29 0 1346 245 6 14 chr9 6661679 6662026 -135609418 - L1M4 LINE L1 -2046 4598 4255 4432 235 54 43 chr9 6662029 6664025 -135607419 - L1M4 LINE L1 -4656 1990 5 476 343 78 12 chr9 6664050 6664371 -135607073 - L1MEc LINE L1 -3404 2725 2384 1529 188 18 25 chr9 6664382 6664700 -135606744 - AluJo SINE Alu 0 319 4 3041 93 32 5 chr9 6664701 6665133 -135606311 - MLT2A1 LTR ERVL 0 444 1 550 322 70 36 chr9 6665142 6665642 -135605802 - L1MEc LINE L1 -4016 2294 1778 234 0 0 0 chr9 6666544 6666570 -135604874 + (A)n Simple_repeat Simple_repeat 1 26 0 2332 64 0 3 chr9 6666701 6667010 -135604434 + AluY SINE Alu 1 308 0 612 242 80 58 chr9 6667041 6667379 -135604065 + L1MEc LINE L1 2179 2492 -3723 1199 165 5 15 chr9 6669049 6669276 -135602168 - AluJo SINE Alu 0 309 85 1967 127 0 43 chr9 6669388 6669687 -135601757 + AluSq SINE Alu 7 292 -21 3261 136 71 43 chr9 6669814 6670492 -135600952 - LTR8A LTR ERV1 -30 697 1 521 184 31 17 chr9 6671513 6671873 -135599571 + (TA)n Simple_repeat Simple_repeat 1 365 0 421 301 35 60 chr9 6672438 6672637 -135598807 + MIR SINE MIR 2 195 -67 355 240 123 68 chr9 6672706 6672852 -135598592 - MIR SINE MIR -75 187 34 228 67 0 0 chr9 6673670 6673700 -135597744 + (TTA)n Simple_repeat Simple_repeat 2 31 0 1762 178 21 0 chr9 6673702 6673983 -135597461 - AluJb SINE Alu -25 287 1 366 284 24 95 chr9 6675835 6676046 -135595398 - L1ME3A LINE L1 -1 6169 5974 595 280 111 18 chr9 6676647 6676979 -135594465 - MLT1L LTR MaLR 0 615 253 526 195 0 70 chr9 6678330 6678458 -135592986 + MIR SINE MIR 33 151 -57 1143 209 0 30 chr9 6678647 6678877 -135592567 - AluJb SINE Alu -9 303 81 1363 294 71 30 chr9 6678878 6678930 -135592514 - L1MEd LINE L1 -4865 1254 1206 1748 168 0 25 chr9 6678930 6679245 -135592199 - AluJo SINE Alu -5 307 1 1363 294 71 30 chr9 6679245 6680202 -135591242 - L1MEd LINE L1 -4913 1206 274 841 242 11 0 chr9 6680905 6681083 -135590361 + MIR SINE MIR 79 258 -4 717 231 81 0 chr9 6681083 6681256 -135590188 + AluJo SINE Alu 120 306 -6 1800 140 39 3 chr9 6681504 6681790 -135589654 + AluJo SINE Alu 1 296 -16 260 245 0 0 chr9 6682107 6682160 -135589284 - MIR SINE MIR -59 149 97 399 339 133 33 chr9 6682634 6683032 -135588412 - L2 LINE L2 -16 3256 2819 292 311 152 7 chr9 6683790 6683941 -135587503 + MIR SINE MIR 36 208 -54 431 358 33 30 chr9 6683975 6684307 -135587137 + L2 LINE L2 2559 2891 -423 4747 222 93 18 chr9 6684443 6685526 -135585918 - L1M4 LINE L1 -1825 4321 3321 231 88 0 0 chr9 6685526 6685560 -135585884 + (TTTG)n Simple_repeat Simple_repeat 2 35 0 4747 222 93 18 chr9 6685560 6685910 -135585534 - L1M4 LINE L1 -2825 3321 2999 1822 166 0 10 chr9 6685910 6686212 -135585232 - AluSx SINE Alu -13 299 1 4747 222 93 18 chr9 6686212 6686446 -135584998 - L1M4 LINE L1 -3147 2999 2528 1779 161 3 17 chr9 6686685 6686983 -135584461 + AluJb SINE Alu 1 294 -18 457 299 128 9 chr9 6687624 6687835 -135583609 - MIR SINE MIR -7 255 20 222 317 70 75 chr9 6688374 6688560 -135582884 - L2 LINE L2 -995 2319 2135 616 199 93 7 chr9 6688664 6688815 -135582629 - LTR53 LTR ERVL -61 458 295 453 159 0 0 chr9 6689162 6689231 -135582213 - AluJ/FLAM SINE Alu -243 69 1 1182 267 63 13 chr9 6689248 6689791 -135581653 - L1M4 LINE L1 -2400 3746 3177 35 0 0 0 chr9 6689795 6689830 -135581614 + AT_rich Low_complexity Low_complexity 1 35 0 1742 187 52 3 chr9 6689938 6690286 -135581158 + MLT1A1 LTR MaLR 1 365 0 230 121 0 0 chr9 6690527 6690560 -135580884 - L2 LINE L2 -16 3256 3224 309 214 87 19 chr9 6690636 6690739 -135580705 - MLT1J LTR MaLR -33 478 369 334 265 120 56 chr9 6690752 6690850 -135580594 - LTR16A1 LTR ERVL 0 457 367 195 100 0 0 chr9 6690850 6690880 -135580564 + (CAGGG)n Simple_repeat Simple_repeat 1 30 0 334 265 120 56 chr9 6690880 6691015 -135580429 - LTR16A1 LTR ERVL -90 367 209 2105 123 3 7 chr9 6691290 6691583 -135579861 - AluSx SINE Alu -16 296 5 330 234 34 88 chr9 6691626 6691858 -135579586 - MLT1J LTR MaLR -200 311 54 247 275 87 81 chr9 6691953 6692102 -135579342 - MIR SINE MIR -58 150 1 364 99 0 0 chr9 6692137 6692199 -135579245 - MLT2B3 LTR ERVL 0 520 403 234 81 0 0 chr9 6692199 6692236 -135579208 + (TA)n Simple_repeat Simple_repeat 2 38 0 227 104 0 0 chr9 6692243 6692291 -135579153 - LTR66 LTR ERVL -169 441 394 2019 199 17 60 chr9 6692296 6692310 -135579134 - MLT2B3 LTR ERVL -44 500 487 459 0 0 0 chr9 6692310 6692361 -135579083 + (TCTA)n Simple_repeat Simple_repeat 2 52 0 2019 199 17 60 chr9 6692361 6692780 -135578664 - MLT2B3 LTR ERVL -57 487 115 1939 154 3 3 chr9 6692780 6693085 -135578359 + AluJb SINE Alu 1 305 -7 2019 199 17 60 chr9 6693085 6693196 -135578248 - MLT2B3 LTR ERVL -429 115 1 1983 138 0 7 chr9 6693551 6693840 -135577604 + AluSg SINE Alu 1 287 -23 1337 87 0 0 chr9 6694092 6694276 -135577168 - L1PA14 LINE L1 0 6161 5978 1725 84 0 24 chr9 6694296 6694547 -135576897 - L1PA14 LINE L1 -291 5870 5626 204 295 103 13 chr9 6695150 6695228 -135576216 - L2 LINE L2 -21 3251 3167 38914 69 4 3 chr9 6695351 6697185 -135574259 + L1PA5 LINE L1 11 1841 -4313 2285 52 41 3 chr9 6697185 6697475 -135573969 - AluY SINE Alu -10 301 1 38914 69 4 3 chr9 6697475 6701774 -135569670 + L1PA5 LINE L1 1841 6152 -2 234 304 29 10 chr9 6704078 6704180 -135567264 + MIR SINE MIR 28 131 -131 425 222 22 0 chr9 6704217 6704307 -135567137 + MLT1H LTR MaLR 458 549 0 322 289 10 10 chr9 6704311 6704415 -135567029 + MIR SINE MIR 159 262 0 533 177 218 7 chr9 6704896 6705043 -135566401 - MER5A DNA MER1_type 0 189 12 637 246 191 24 chr9 6705677 6706018 -135565426 + MLT1J LTR MaLR 107 504 -7 25 0 0 0 chr9 6706441 6706466 -135564978 + AT_rich Low_complexity Low_complexity 1 25 0 331 266 24 32 chr9 6706590 6706714 -135564730 - MER117 DNA MER1_type -69 128 6 1952 154 23 0 chr9 6707741 6708047 -135563397 - AluSq SINE Alu 0 313 1 22 0 0 0 chr9 6708170 6708192 -135563252 + AT_rich Low_complexity Low_complexity 1 22 0 233 237 21 10 chr9 6708949 6709046 -135562398 - L1ME LINE L1 -193 5928 5831 850 213 66 92 chr9 6709422 6709769 -135561675 - MER46C DNA MER2_type 0 338 1 646 258 30 39 chr9 6709907 6710117 -135561327 - MIR SINE MIR -3 259 52 1143 232 77 16 chr9 6710853 6710926 -135560518 - MSTD LTR MaLR 0 396 329 1930 158 6 19 chr9 6710926 6711237 -135560207 + AluJo SINE Alu 1 307 -5 1143 232 77 16 chr9 6711237 6711473 -135559971 - MSTD LTR MaLR -67 329 68 739 62 0 0 chr9 6711473 6711569 -135559875 + AluSc SINE Alu 212 307 -2 432 168 47 0 chr9 6711579 6711668 -135559776 - MSTD LTR MaLR -344 89 1 680 284 48 141 chr9 6712435 6712885 -135558559 + L2 LINE L2 1950 2440 -874 1756 196 17 63 chr9 6712885 6713221 -135558223 - MSTD LTR MaLR -1 395 80 2363 103 0 0 chr9 6713221 6713523 -135557921 - AluSc SINE Alu -7 302 1 1756 196 17 63 chr9 6713523 6713600 -135557844 - MSTD LTR MaLR -316 80 1 680 284 48 141 chr9 6713600 6713712 -135557732 + L2 LINE L2 2440 2561 -753 2473 84 0 3 chr9 6713712 6714023 -135557421 - AluY SINE Alu 0 311 2 680 284 48 141 chr9 6714023 6714382 -135557062 + L2 LINE L2 2561 2786 -528 653 302 21 8 chr9 6714415 6714650 -135556794 - Charlie8 DNA MER1_type -2179 238 1 1452 167 105 0 chr9 6715171 6715465 -135555979 + MER44D DNA MER2_type 9 603 -6 2024 121 11 3 chr9 6716150 6716432 -135555012 + AluSx SINE Alu 1 284 -28 180 0 0 0 chr9 6716436 6716456 -135554988 + (TAAA)n Simple_repeat Simple_repeat 2 21 0 1982 155 39 62 chr9 6716625 6717010 -135554434 + MSTB1 LTR MaLR 3 378 -54 2813 95 87 27 chr9 6717010 6717494 -135553950 + MER75 DNA T2_type 2 514 0 1982 155 39 62 chr9 6717494 6717546 -135553898 + MSTB1 LTR MaLR 378 430 -2 184 287 58 35 chr9 6717567 6717654 -135553790 + L2 LINE L2 3179 3267 -5 5703 124 32 13 chr9 6718294 6719302 -135552142 + Tigger3b DNA MER2_type 7 1033 -198 1912 149 56 20 chr9 6719306 6719696 -135551748 + MER4E LTR ERV1 371 774 -5 268 288 105 13 chr9 6719722 6719875 -135551569 + L1MC4a LINE L1 6415 6581 -1227 * 402 230 178 0 chr9 6719872 6720007 -135551437 + L1MC4 LINE L1 6769 6927 -1115 1239 262 67 80 chr9 6720055 6720708 -135550736 - LTR19C LTR ERV1 0 779 135 279 214 0 0 chr9 6720764 6720834 -135550610 + L1MC4 LINE L1 7154 7223 -819 418 297 110 7 chr9 6721495 6721640 -135549804 - MIR3 SINE MIR -15 193 34 285 303 19 0 chr9 6722069 6722224 -135549220 - MER103 DNA DNA 0 166 9 2130 120 3 13 chr9 6722911 6723219 -135548225 - AluSx SINE Alu -7 305 1 233 167 17 0 chr9 6723387 6723447 -135547997 - L1ME4a LINE L1 -1 6120 6060 532 290 80 35 chr9 6723463 6723745 -135547699 - L1ME4a LINE L1 -139 5982 5714 447 87 0 0 chr9 6723745 6723814 -135547630 + (TG)n Simple_repeat Simple_repeat 2 70 0 532 290 80 35 chr9 6723814 6724106 -135547338 - L1ME4a LINE L1 -407 5714 5382 1547 198 13 31 chr9 6724461 6724779 -135546665 + AluJo SINE Alu 1 312 0 417 364 18 49 chr9 6724869 6725155 -135546289 - L2 LINE L2 -493 2821 2545 266 259 52 0 chr9 6725237 6725295 -135546149 - MIR SINE MIR -116 92 32 274 354 137 13 chr9 6725424 6725803 -135545641 - L2 LINE L2 -903 2411 1986 666 176 14 131 chr9 6726016 6726237 -135545207 + MIR SINE MIR 68 262 0 1059 94 50 28 chr9 6726640 6726820 -135544624 + L1MB3 LINE L1 5999 6182 -1 612 242 80 58 chr9 6728606 6728944 -135542500 - L1MEc LINE L1 -3723 2423 2110 2405 50 0 0 chr9 6728975 6729283 -135542161 - AluY SINE Alu 0 308 1 679 198 93 0 chr9 6729286 6729448 -135541996 - L1 LINE L1 -1800 4346 4170 3201 88 0 0 chr9 6731327 6731768 -135539676 - L1P LINE L1 -5705 441 1 29 60 0 0 chr9 6731783 6731833 -135539611 + AT_rich Low_complexity Low_complexity 1 50 0 2051 118 0 0 chr9 6731973 6732244 -135539200 + AluSx SINE Alu 24 294 -18 2193 96 0 51 chr9 6732450 6732764 -135538680 + AluSc SINE Alu 1 298 -11 6038 138 16 16 chr9 6733084 6735121 -135536323 - L1MA3 LINE L1 -1 6304 4266 297 73 0 0 chr9 6735122 6735163 -135536281 + HERVL LTR ERVL 1339 1379 -4275 389 301 46 53 chr9 6735238 6735833 -135535611 + L1M4 LINE L1 2402 3000 -3146 1715 209 64 43 chr9 6735833 6736301 -135535143 - MER31A LTR ERV1 -4 481 4 389 301 46 53 chr9 6736301 6736422 -135535022 + L1M4 LINE L1 3000 3120 -3026 2176 127 7 0 chr9 6736422 6736729 -135534715 + AluSx SINE Alu 1 309 -3 389 301 46 53 chr9 6736729 6736972 -135534472 + L1M4 LINE L1 3120 3355 -2791 1275 236 64 12 chr9 6737101 6737520 -135533924 + L1M4 LINE L1 4507 4947 -1199 210 168 0 69 chr9 6737523 6737624 -135533820 + GA-rich Low_complexity Low_complexity 1 94 0 388 252 17 0 chr9 6737624 6737743 -135533701 + L1M4 LINE L1 4943 5063 -1083 211 125 0 71 chr9 6737819 6737875 -135533569 + (GGGA)n Simple_repeat Simple_repeat 2 53 0 413 237 17 0 chr9 6737905 6738023 -135533421 + L1MC2 LINE L1 4943 5062 -1084 1040 168 139 9 chr9 6738555 6738811 -135532633 + L1ME1 LINE L1 5877 6161 -5 2246 146 55 55 chr9 6739098 6739586 -135531858 + L1MC2 LINE L1 5436 5923 -410 1276 158 14 0 chr9 6739586 6739808 -135531636 + Tigger3(Golem) DNA MER2_type 1 225 -2804 1862 87 42 19 chr9 6739821 6740131 -135531313 - Tigger3b DNA MER2_type -572 659 343 30 0 0 0 chr9 6741738 6741768 -135529676 + AT_rich Low_complexity Low_complexity 1 30 0 1002 119 57 23 chr9 6741954 6742131 -135529313 - MER46A DNA MER2_type 0 236 54 212 57 0 29 chr9 6743545 6743580 -135527864 + (CAAA)n Simple_repeat Simple_repeat 2 35 0 1117 147 15 10 chr9 6743657 6743854 -135527590 + L1MC2 LINE L1 6139 6336 -8 449 257 86 29 chr9 6743886 6744026 -135527418 + MIR SINE MIR 40 187 -75 262 279 0 15 chr9 6744055 6744123 -135527321 + MER5A DNA MER1_type 10 76 -113 1764 159 43 7 chr9 6744123 6744424 -135527020 + AluJb SINE Alu 1 312 0 231 36 0 0 chr9 6744838 6744866 -135526578 + (A)n Simple_repeat Simple_repeat 1 28 0 2449 60 0 7 chr9 6744873 6745175 -135526269 + AluY SINE Alu 1 300 -11 6379 130 16 15 chr9 6745495 6747531 -135523913 - L1MA3 LINE L1 -1 6304 4266 297 73 0 0 chr9 6747532 6747573 -135523871 + HERVL LTR ERVL 1339 1379 -4275 565 313 51 47 chr9 6747648 6748243 -135523201 + L1M4 LINE L1 2402 2993 -3153 1715 209 64 43 chr9 6748243 6748711 -135522733 - MER31A LTR ERV1 -4 481 4 565 313 51 47 chr9 6748711 6748832 -135522612 + L1M4 LINE L1 2993 3112 -3034 2176 127 7 0 chr9 6748832 6749139 -135522305 + AluSx SINE Alu 1 309 -3 565 313 51 47 chr9 6749139 6749685 -135521759 + L1M4 LINE L1 3112 3671 -2475 790 334 47 31 chr9 6749722 6750320 -135521124 + L1M4 LINE L1 4018 4640 -1506 2196 108 0 44 chr9 6750320 6750466 -135520978 + AluSx SINE Alu 1 127 -185 2469 82 0 22 chr9 6750466 6750781 -135520663 + AluY SINE Alu 1 308 -3 2196 108 0 44 chr9 6750781 6750949 -135520495 + AluSx SINE Alu 127 301 -11 790 334 47 31 chr9 6750949 6751354 -135520090 + L1M4 LINE L1 4640 5037 -1109 * 1364 124 10 74 chr9 6751343 6751575 -135519869 + L1MC1 LINE L1 5657 5754 -579 2330 112 0 6 chr9 6751575 6751888 -135519556 + AluSx SINE Alu 1 311 -1 1364 124 10 74 chr9 6751888 6752020 -135519424 + L1MC1 LINE L1 5754 5893 -440 378 0 0 0 chr9 6752043 6752085 -135519359 + (CA)n Simple_repeat Simple_repeat 2 43 0 360 327 19 0 chr9 6752198 6752302 -135519142 + L2 LINE L2 3162 3267 -5 252 0 0 0 chr9 6752737 6752765 -135518679 + (TTTTTG)n Simple_repeat Simple_repeat 3 30 0 2133 135 26 0 chr9 6754526 6754830 -135516614 + AluSx SINE Alu 1 312 0 1554 214 38 17 chr9 6755122 6755623 -135515821 - MER21B LTR ERV1 -107 756 206 1137 157 20 0 chr9 6755704 6755901 -135515543 - L1PB3 LINE L1 -1 6153 5953 2158 94 0 60 chr9 6755910 6756228 -135515216 - AluSc SINE Alu -10 299 1 237 259 0 0 chr9 6756228 6756282 -135515162 - MER21B LTR ERV1 -770 93 40 2051 118 0 0 chr9 6756434 6756705 -135514739 - AluSx SINE Alu -18 294 24 29 60 0 0 chr9 6756845 6756895 -135514549 + AT_rich Low_complexity Low_complexity 1 50 0 27322 42 1 3 chr9 6756910 6763076 -135508368 + L1PA4 LINE L1 1 6152 -3 1053 277 95 25 chr9 6764045 6764773 -135506671 - L1ME LINE L1 -403 5759 4922 2194 109 0 0 chr9 6764773 6765057 -135506387 + AluSx SINE Alu 5 288 -24 1053 277 95 25 chr9 6765057 6765427 -135506017 - L1ME LINE L1 -1240 4922 4579 265 353 15 45 chr9 6765487 6765620 -135505824 - L2 LINE L2 0 3272 3144 2087 175 35 22 chr9 6765750 6766156 -135505288 - MLT2D LTR ERVL 0 414 4 2126 134 3 0 chr9 6766156 6766454 -135504990 - AluJb SINE Alu -13 299 1 2329 110 0 16 chr9 6767016 6767333 -135504111 - AluSx SINE Alu 0 312 1 840 125 8 16 chr9 6767339 6767467 -135503977 - FLAM_C SINE Alu -10 133 7 420 274 42 38 chr9 6767849 6768016 -135503428 + MIR3 SINE MIR 4 172 -36 205 271 85 0 chr9 6768127 6768186 -135503258 + MIR3 SINE MIR 142 205 -3 501 290 10 62 chr9 6768411 6768604 -135502840 + MER5A DNA MER1_type 1 183 -6 528 220 165 11 chr9 6768982 6769140 -135502304 + MER5A DNA MER1_type 4 189 0 692 203 24 0 chr9 6769242 6769365 -135502079 - AluJb SINE Alu -46 266 141 1600 109 9 0 chr9 6769927 6770148 -135501296 + AluSq SINE Alu 77 299 -14 3326 234 109 26 chr9 6770412 6771581 -135499863 - HAL1 LINE L1 -540 1967 702 241 224 15 15 chr9 6771601 6771668 -135499776 + MLT1L LTR MaLR 15 81 -534 1278 228 71 63 chr9 6772869 6773378 -135498066 + HAL1 LINE L1 3 515 -1992 359 265 138 5 chr9 6773444 6773633 -135497811 + L1ME LINE L1 5391 5604 -517 370 184 178 55 chr9 6773639 6773802 -135497642 + L1ME LINE L1 5622 5804 -317 283 150 0 0 chr9 6773948 6774008 -135497436 + L1MC3 LINE L1 7726 7785 0 233 310 128 75 chr9 6774531 6774662 -135496782 - L2 LINE L2 -211 3061 2912 2023 136 16 48 chr9 6774662 6775038 -135496406 - THE1B LTR MaLR 0 364 1 233 310 128 75 chr9 6775038 6775132 -135496312 - L2 LINE L2 -360 2912 2824 532 227 102 6 chr9 6775316 6775492 -135495952 + L1ME3A LINE L1 5759 5951 -219 255 226 0 0 chr9 6775732 6775794 -135495650 + HsTC2 DNA Tc2 1 62 -1836 21 36 0 0 chr9 6775819 6775847 -135495597 + AT_rich Low_complexity Low_complexity 1 28 0 688 133 38 0 chr9 6775847 6775952 -135495492 - FRAM SINE Alu -21 155 47 13924 197 30 19 chr9 6775998 6778479 -135492965 + L1PB1 LINE L1 1 2454 -4434 207 69 0 0 chr9 6778479 6778508 -135492936 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 13924 197 30 19 chr9 6778508 6779403 -135492041 + L1PB1 LINE L1 2454 3338 -3550 2172 98 14 0 chr9 6779403 6779690 -135491754 + AluSc SINE Alu 3 293 -16 13924 197 30 19 chr9 6779690 6779910 -135491534 + L1PB1 LINE L1 3338 3554 -3334 2277 109 0 0 chr9 6779910 6780213 -135491231 + AluSx SINE Alu 1 303 -9 13924 197 30 19 chr9 6780213 6783229 -135488215 + L1PB1 LINE L1 3554 6888 0 594 183 40 40 chr9 6783230 6783356 -135488088 - FLAM_C SINE Alu -17 126 1 1865 173 84 13 chr9 6783359 6783752 -135487692 + MSTB LTR MaLR 2 422 -4 1219 152 107 49 chr9 6784046 6784324 -135487120 + AluJb SINE Alu 27 318 0 2044 178 18 13 chr9 6784798 6785181 -135486263 - MSTD LTR MaLR -11 385 1 5195 118 7 23 chr9 6787188 6788051 -135483393 - L1PA16 LINE L1 -1 6165 5317 2871 10 0 0 chr9 6788054 6788365 -135483079 - AluYa5 SINE Alu 0 311 1 679 198 93 0 chr9 6788368 6788530 -135482914 - L1 LINE L1 -1800 4346 4170 21 0 0 0 chr9 6792408 6792429 -135479015 + AT_rich Low_complexity Low_complexity 1 21 0 319 316 85 69 chr9 6792831 6793288 -135478156 - L2 LINE L2 -182 3090 2616 1199 181 188 19 chr9 6793811 6794120 -135477324 + MLT1A1 LTR MaLR 5 365 0 10761 143 48 87 chr9 6794579 6796817 -135474627 + L1M4c LINE L1 14 2142 -4242 2371 96 0 13 chr9 6796817 6797131 -135474313 - AluY SINE Alu -1 310 1 10761 143 48 87 chr9 6797131 6797432 -135474012 + L1M4c LINE L1 2142 2453 -3931 38155 71 7 4 chr9 6797432 6803562 -135467882 + L1PA5 LINE L1 3 6153 -1 4007 228 56 2 chr9 6803566 6804444 -135467000 + L1MA4 LINE L1 6 930 -6238 336 236 56 14 chr9 6804444 6804516 -135466928 + L1MA4 LINE L1 858 932 -6236 * 10775 175 92 31 chr9 6804513 6806541 -135464903 + L1MA4 LINE L1 3405 5309 -2012 850 169 0 0 chr9 6806541 6806671 -135464773 + FLAM_C SINE Alu 3 132 -1 10775 175 92 31 chr9 6806671 6806828 -135464616 + L1MA4 LINE L1 5309 5455 -1866 1719 186 3 37 chr9 6806828 6807151 -135464293 - AluJo SINE Alu 0 312 1 10775 175 92 31 chr9 6807151 6807262 -135464182 + L1MA4 LINE L1 5455 5558 -1763 1971 158 0 13 chr9 6807262 6807578 -135463866 + AluJb SINE Alu 1 312 0 10775 175 92 31 chr9 6807578 6808766 -135462678 + L1MA4 LINE L1 5558 7145 -176 2402 67 3 3 chr9 6808766 6809063 -135462381 - AluY SINE Alu -14 297 1 10775 175 92 31 chr9 6809063 6809247 -135462197 + L1MA4 LINE L1 7145 7316 -5 5169 226 33 23 chr9 6809260 6809820 -135461624 + L1M4c LINE L1 2439 2992 -3390 2275 104 0 0 chr9 6809820 6810109 -135461335 + AluY SINE Alu 1 289 -22 5169 226 33 23 chr9 6810109 6811391 -135460053 + L1M4c LINE L1 2992 4307 -2075 468 282 10 0 chr9 6811913 6812016 -135459428 - L2 LINE L2 0 3313 3210 1401 163 45 45 chr9 6812021 6812126 -135459318 + AluJo SINE Alu 7 111 -201 1786 109 70 4 chr9 6812126 6812383 -135459061 - AluSx SINE Alu -38 274 1 1401 163 45 45 chr9 6812383 6812566 -135458878 + AluJo SINE Alu 110 295 -17 530 292 13 0 chr9 6813148 6813302 -135458142 - MIR SINE MIR 0 262 107 322 253 0 13 chr9 6813302 6813377 -135458067 + MER39 LTR ERV1 1 74 -633 932 149 0 37 chr9 6813391 6813552 -135457892 + FRAM SINE Alu 18 172 -4 1119 206 47 117 chr9 6813597 6814067 -135457377 + MER39 LTR ERV1 269 705 -2 352 257 20 20 chr9 6814068 6814169 -135457275 - MIR SINE MIR -151 111 11 210 273 0 0 chr9 6814270 6814314 -135457130 + L2 LINE L2 2963 3006 -307 290 194 16 16 chr9 6814316 6814378 -135457066 + MLT1B LTR MaLR 4 65 -325 2498 50 17 0 chr9 6814702 6815001 -135456443 - AluY SINE Alu -7 304 1 1815 171 7 13 chr9 6815171 6815469 -135455975 + AluJo SINE Alu 3 298 -14 2394 94 0 0 chr9 6816537 6816836 -135454608 + AluSg SINE Alu 1 299 -11 744 157 58 8 chr9 6817751 6817872 -135453572 - FLAM_A SINE Alu -2 131 5 744 258 97 5 chr9 6817950 6818167 -135453277 - MIR SINE MIR -18 244 8 252 130 0 0 chr9 6819167 6819213 -135452231 + (A)n Simple_repeat Simple_repeat 1 46 0 184 342 165 13 chr9 6819956 6820114 -135451330 + L2 LINE L2 2755 2936 -378 726 312 26 26 chr9 6820119 6820388 -135451056 + MER115 DNA AcHobo 34 302 -391 2300 90 0 34 chr9 6821500 6821822 -135449622 - AluSx SINE Alu -1 311 1 1285 312 71 47 chr9 6821918 6822059 -135449385 - ERVL LTR ERVL -3046 2608 2472 2325 84 3 0 chr9 6822059 6822375 -135449069 + AluSq SINE Alu 2 318 0 1285 312 71 47 chr9 6822375 6823351 -135448093 - ERVL LTR ERVL -3182 2472 1449 1019 340 52 38 chr9 6823503 6824261 -135447183 - ERVL LTR ERVL -3809 1187 420 1634 188 50 10 chr9 6824723 6824842 -135446602 + AluJo SINE Alu 2 115 -197 2227 95 0 7 chr9 6824842 6825136 -135446308 + AluSg SINE Alu 1 292 -18 1634 188 50 10 chr9 6825136 6825314 -135446130 + AluJo SINE Alu 115 311 -1 2166 139 0 0 chr9 6825314 6825617 -135445827 + AluSx SINE Alu 1 303 -9 2083 129 17 0 chr9 6825619 6825913 -135445531 + AluSx SINE Alu 1 299 -13 2112 183 39 39 chr9 6826355 6826819 -135444625 - MER67A LTR ERV1 0 543 80 294 154 282 0 chr9 6826887 6826965 -135444479 - MER67A LTR ERV1 -443 100 1 231 167 0 0 chr9 6827111 6827153 -135444291 + (TTCA)n Simple_repeat Simple_repeat 3 44 0 1781 186 3 0 chr9 6827966 6828262 -135443182 + AluJb SINE Alu 1 297 -15 803 215 0 0 chr9 6828267 6828411 -135443033 + AluSg/x SINE Alu 165 308 -2 360 94 0 0 chr9 6828411 6828464 -135442980 + (GGGA)n Simple_repeat Simple_repeat 1 53 0 311 243 112 57 chr9 6828949 6829086 -135442358 + MER5A DNA MER1_type 29 186 -3 337 268 0 0 chr9 6829095 6829166 -135442278 + L1ME LINE L1 5512 5582 -539 15042 141 12 6 chr9 6829703 6831943 -135439501 + L1MA3 LINE L1 12 2264 -5301 1830 166 7 7 chr9 6831943 6832245 -135439199 - AluJb SINE Alu -10 302 1 4723 135 3 7 chr9 6832262 6832953 -135438491 + THE1-int LTR MaLR 629 1316 -264 384 129 16 0 chr9 6832953 6833015 -135438429 - MER61A LTR ERV1 -280 63 1 17498 79 49 22 chr9 6833015 6835257 -135436187 - MER61A-int LTR ERV1 0 5217 2903 1966 135 7 3 chr9 6835257 6835553 -135435891 + AluSx SINE Alu 1 297 -15 17498 79 49 22 chr9 6835553 6835754 -135435690 - MER61A-int LTR ERV1 -2314 2903 2709 15736 84 5 0 chr9 6835763 6837819 -135433625 + L1P LINE L1 11 2077 -4069 44061 50 1 4 chr9 6837819 6843985 -135427459 + L1PA5 LINE L1 2 6147 -7 8320 88 82 25 chr9 6844003 6845125 -135426319 - MER61A-int LTR ERV1 -2496 2721 1510 1892 117 60 0 chr9 6845125 6845406 -135426038 + AluY SINE Alu 13 310 -1 8320 88 82 25 chr9 6845406 6845609 -135425835 - MER61A-int LTR ERV1 -3707 1510 1320 337 134 45 15 chr9 6845583 6845650 -135425794 - MER61A-int LTR ERV1 -4418 799 731 * 2712 176 35 20 chr9 6845712 6846251 -135425193 - MER61A-int LTR ERV1 -4668 549 3 1941 135 74 19 chr9 6846252 6846577 -135424867 - MER61A LTR ERV1 0 343 1 15881 164 20 25 chr9 6846577 6846819 -135424625 + L1MA3 LINE L1 3353 3595 -4129 1703 180 0 66 chr9 6846819 6847153 -135424291 + AluJb SINE Alu 1 312 0 15881 164 20 25 chr9 6847153 6847499 -135423945 + L1MA3 LINE L1 3595 3941 -3783 2305 85 3 3 chr9 6847499 6847792 -135423652 + AluSp SINE Alu 1 293 -20 15881 164 20 25 chr9 6847792 6848968 -135422476 + L1MA3 LINE L1 3941 5121 -2603 21572 30 3 0 chr9 6848968 6852179 -135419265 - L1PA3 LINE L1 0 6155 2938 15881 164 20 25 chr9 6852179 6852279 -135419165 + L1MA3 LINE L1 5121 5220 -2504 1371 203 43 14 chr9 6852279 6852560 -135418884 + AluJo SINE Alu 1 289 -23 15881 164 20 25 chr9 6852560 6854943 -135416501 + L1MA3 LINE L1 5220 7557 -167 1903 169 0 6 chr9 6854943 6855257 -135416187 + AluSx SINE Alu 1 312 0 15881 164 20 25 chr9 6855257 6855423 -135416021 + L1MA3 LINE L1 7557 7722 -2 306 73 0 0 chr9 6855460 6855501 -135415943 + (TG)n Simple_repeat Simple_repeat 2 42 0 1276 194 68 4 chr9 6855529 6855667 -135415777 - AluJb SINE Alu -35 277 149 276 30 0 0 chr9 6855667 6855700 -135415744 + (TTTA)n Simple_repeat Simple_repeat 4 36 0 1276 194 68 4 chr9 6855700 6855813 -135415631 - AluJb SINE Alu -163 149 10 31 76 0 0 chr9 6855813 6855879 -135415565 + AT_rich Low_complexity Low_complexity 1 66 0 189 0 0 0 chr9 6855879 6855900 -135415544 + (TTATA)n Simple_repeat Simple_repeat 4 24 0 2142 136 0 0 chr9 6856027 6856328 -135415116 + AluSx SINE Alu 1 301 -11 334 271 140 28 chr9 6856333 6856551 -135414893 + L1ME LINE L1 5631 5820 -301 1278 186 7 52 chr9 6857264 6857533 -135413911 - AluJb SINE Alu -18 294 38 1805 132 50 46 chr9 6858117 6858470 -135412974 + MLT1B LTR MaLR 3 392 -36 341 176 29 29 chr9 6858630 6858698 -135412746 + MLT1B LTR MaLR 323 390 0 2134 135 0 0 chr9 6858773 6859069 -135412375 + AluSx SINE Alu 1 296 -16 561 144 25 8 chr9 6859083 6859201 -135412243 + GA-rich Low_complexity Low_complexity 1 120 0 1855 149 7 13 chr9 6859549 6859850 -135411594 + AluJo SINE Alu 7 305 -7 746 196 15 23 chr9 6860770 6860903 -135410541 + FLAM_A SINE Alu 2 133 0 204 275 33 33 chr9 6861360 6861451 -135409993 + (CATA)n Simple_repeat Simple_repeat 4 94 0 206 163 41 0 chr9 6861451 6861500 -135409944 + (CATG)n Simple_repeat Simple_repeat 4 54 0 1953 120 11 0 chr9 6861617 6861926 -135409518 - AluSx SINE Alu 0 312 1 2504 230 109 45 chr9 6862143 6862935 -135408509 - L1ME3 LINE L1 -16 6146 5305 941 207 57 10 chr9 6862992 6863185 -135408259 + MER8 DNA MER2_type 1 202 -37 450 139 0 28 chr9 6863431 6863503 -135407941 + Tigger2 DNA MER2_type 1 70 -2648 2366 83 0 13 chr9 6863730 6864030 -135407414 + AluY SINE Alu 1 296 -15 1226 124 0 0 chr9 6864033 6864202 -135407242 + AluSg/x SINE Alu 130 298 -14 1269 204 12 12 chr9 6864203 6864453 -135406991 + MLT1H LTR MaLR 22 271 -278 2127 138 0 0 chr9 6864579 6864891 -135406553 + AluSx SINE Alu 1 312 0 574 248 46 100 chr9 6864998 6865215 -135406229 + Tigger8 DNA MER2_type 155 347 -319 1718 183 3 3 chr9 6865215 6865505 -135405939 + AluJb SINE Alu 6 295 -17 574 248 46 100 chr9 6865505 6865638 -135405806 + Tigger8 DNA MER2_type 347 486 -180 298 238 72 0 chr9 6865757 6865876 -135405568 + L1ME LINE L1 5631 5765 -397 1578 158 18 32 chr9 6865879 6866157 -135405287 + AluJo SINE Alu 1 274 -38 793 273 24 14 chr9 6866261 6866470 -135404974 + MER58A DNA MER1_type 4 214 -10 1709 197 0 7 chr9 6866816 6867110 -135404334 - AluJo SINE Alu -20 292 1 1133 226 8 77 chr9 6867178 6867358 -135404086 + MLT1G1 LTR MaLR 1 106 -484 2355 75 9 40 chr9 6867358 6867680 -135403764 + AluSx SINE Alu 1 312 0 1133 226 8 77 chr9 6867680 6867859 -135403585 + MLT1G1 LTR MaLR 106 296 -294 290 138 35 11 chr9 6867886 6867973 -135403471 + GA-rich Low_complexity Low_complexity 2 90 0 420 221 11 72 chr9 6868010 6868151 -135403293 + MLT1F1 LTR MaLR 425 530 -37 1363 175 163 44 chr9 6868245 6868448 -135402996 - LTR54B LTR ERV1 -11 487 310 2255 119 0 0 chr9 6868448 6868743 -135402701 - AluSx SINE Alu -17 295 1 1363 175 163 44 chr9 6868743 6868953 -135402491 - LTR54B LTR ERV1 -188 310 17 2006 133 0 36 chr9 6868953 6869261 -135402183 - AluSx SINE Alu -15 297 1 1363 175 163 44 chr9 6869261 6869281 -135402163 - LTR54B LTR ERV1 -481 17 1 275 259 206 46 chr9 6869573 6869704 -135401740 + MIR3 SINE MIR 21 172 -36 1871 175 3 0 chr9 6870659 6870967 -135400477 + AluSx SINE Alu 1 309 -3 201 341 49 71 chr9 6871453 6871864 -135399580 + L2 LINE L2 2257 2658 -656 253 275 174 9 chr9 6872214 6872323 -135399121 - MIR SINE MIR -119 143 17 545 105 13 0 chr9 6872682 6872758 -135398686 - MADE1 DNA Mariner -3 77 1 2336 92 0 7 chr9 6872930 6873234 -135398210 - AluSx SINE Alu -10 302 1 1326 47 0 10 chr9 6873473 6873711 -135397733 + AluY SINE Alu 2 286 -25 279 0 0 0 chr9 6873711 6873742 -135397702 + (CATA)n Simple_repeat Simple_repeat 2 32 0 1326 47 0 10 chr9 6873742 6873761 -135397683 + AluY SINE Alu 286 304 -7 30 0 0 0 chr9 6874967 6874997 -135396447 + GC_rich Low_complexity Low_complexity 1 30 0 325 290 54 0 chr9 6877106 6877199 -135394245 - MER91B DNA MER1_type -1 189 92 460 149 243 68 chr9 6877443 6877591 -135393853 + MER5A DNA MER1_type 10 183 -6 1998 103 19 23 chr9 6877612 6877922 -135393522 - AluSc SINE Alu 0 309 1 2417 28 52 0 chr9 6878090 6878381 -135393063 - AluY SINE Alu -5 306 1 185 123 53 18 chr9 6878572 6878629 -135392815 + (TA)n Simple_repeat Simple_repeat 1 59 0 23 0 0 0 chr9 6879814 6879837 -135391607 + AT_rich Low_complexity Low_complexity 1 23 0 1690 168 144 47 chr9 6880331 6880753 -135390691 - MLT1C LTR MaLR -4 463 1 357 179 64 13 chr9 6880780 6880858 -135390586 - MLT1B LTR MaLR -271 119 38 1488 161 38 65 chr9 6881288 6881603 -135389841 - AluJb SINE Alu 0 307 1 2069 112 17 3 chr9 6881615 6881909 -135389535 - AluSg SINE Alu -12 298 1 2300 63 7 17 chr9 6881977 6882276 -135389168 + AluY SINE Alu 1 296 -15 2131 119 0 16 chr9 6882961 6883271 -135388173 - AluSx SINE Alu -7 305 1 453 260 136 16 chr9 6883475 6883688 -135387756 - L1ME3A LINE L1 -321 5800 5612 1233 117 6 0 chr9 6883741 6883912 -135387532 - AluSg SINE Alu -116 194 23 474 271 86 24 chr9 6883915 6884170 -135387274 - L1ME3A LINE L1 -1384 4762 4492 987 148 12 0 chr9 6884170 6884332 -135387112 - AluJb SINE Alu -18 294 131 2246 108 0 3 chr9 6885218 6885523 -135385921 + AluSg SINE Alu 1 304 -6 349 285 46 8 chr9 6885586 6885716 -135385728 + L1 LINE L1 4060 4194 -1952 2571 153 244 139 chr9 6886074 6886641 -135384803 - L1MC3 LINE L1 -2 7783 7276 271 214 39 78 chr9 6886641 6886744 -135384700 - MLT1F1 LTR MaLR -442 125 27 2571 153 244 139 chr9 6886744 6887027 -135384417 - L1MC3 LINE L1 -509 7276 7024 2009 115 13 35 chr9 6887027 6887341 -135384103 + AluSx SINE Alu 1 307 -5 2571 153 244 139 chr9 6887341 6887491 -135383953 - L1MC3 LINE L1 -761 7024 6565 209 370 69 40 chr9 6887834 6888007 -135383437 + MIR SINE MIR 1 178 -84 2176 118 10 0 chr9 6888297 6888602 -135382842 - AluSq SINE Alu -5 308 1 2022 134 7 0 chr9 6888959 6889251 -135382193 + AluSx SINE Alu 1 294 -18 249 278 35 43 chr9 6889826 6889941 -135381503 - L1ME3A LINE L1 -95 6075 5962 1911 160 20 0 chr9 6890096 6890402 -135381042 - AluJo SINE Alu 0 312 1 2048 134 3 7 chr9 6890436 6890735 -135380709 + AluSx SINE Alu 1 298 -14 182 369 98 16 chr9 6890749 6890871 -135380573 + MIR SINE MIR 19 150 -112 360 191 0 0 chr9 6890967 6891035 -135380409 - Alu SINE Alu 0 301 234 1043 95 0 20 chr9 6891035 6891183 -135380261 - AluSq/x SINE Alu -165 147 3 261 308 64 0 chr9 6891332 6891410 -135380034 - MIR SINE MIR -149 113 31 1941 145 17 0 chr9 6891574 6891864 -135379580 - AluSq SINE Alu -18 295 1 1830 213 107 22 chr9 6891993 6892481 -135378963 + MER74B LTR ERVL 78 606 -16 1281 199 102 0 chr9 6892880 6893146 -135378298 + AluJo SINE Alu 1 293 -19 320 331 142 7 chr9 6894011 6894159 -135377285 + MIR SINE MIR 6 173 -89 2113 109 31 7 chr9 6894394 6894688 -135376756 - AluSx SINE Alu -11 301 1 2099 118 7 7 chr9 6896004 6896293 -135375151 - AluSx SINE Alu -23 289 1 1402 204 25 32 chr9 6896405 6896554 -135374890 - AluJb SINE Alu -32 280 132 1986 105 54 14 chr9 6896554 6896848 -135374596 - AluSx SINE Alu -6 306 1 1402 204 25 32 chr9 6896848 6896978 -135374466 - AluJb SINE Alu -180 132 3 544 164 239 13 chr9 6896988 6897147 -135374297 - L1MB7 LINE L1 0 6184 5990 1942 130 0 7 chr9 6897158 6897463 -135373981 - AluSx SINE Alu 0 303 1 2092 143 0 0 chr9 6898779 6899087 -135372357 - AluSx SINE Alu -4 308 1 455 328 218 29 chr9 6899092 6899162 -135372282 + L3 LINE CR1 916 971 -606 1904 158 20 0 chr9 6899162 6899466 -135371978 - AluSx SINE Alu -2 310 1 455 328 218 29 chr9 6899466 6899922 -135371522 + L3 LINE CR1 971 1542 -35 1418 142 134 0 chr9 6900741 6900994 -135370450 - AluSx SINE Alu -12 300 14 21 0 0 0 chr9 6902081 6902102 -135369342 + AT_rich Low_complexity Low_complexity 1 21 0 312 282 58 83 chr9 6902330 6902486 -135368958 - MER5B DNA MER1_type -1 177 26 277 146 42 0 chr9 6902528 6902576 -135368868 - MER5B DNA MER1_type -128 50 1 598 180 33 161 chr9 6902584 6902657 -135368787 + MER5A DNA MER1_type 1 82 -107 1755 154 17 33 chr9 6902657 6902956 -135368488 + AluJb SINE Alu 7 300 -12 598 180 33 161 chr9 6902956 6903093 -135368351 + MER5A DNA MER1_type 82 184 -5 1864 137 7 0 chr9 6903547 6903818 -135367626 - AluSx SINE Alu -39 273 1 1602 167 7 48 chr9 6904006 6904344 -135367100 - AluJo SINE Alu 0 327 2 449 269 173 15 chr9 6904830 6905027 -135366417 - MIR SINE MIR -32 230 3 211 235 20 92 chr9 6906062 6906160 -135365284 - MER5A DNA MER1_type -32 157 67 2084 125 3 3 chr9 6906160 6906456 -135364988 - AluSq SINE Alu -17 296 1 934 145 0 36 chr9 6906563 6906701 -135364743 + FLAM_C SINE Alu 1 133 0 1913 137 11 0 chr9 6906838 6907115 -135364329 - AluSx SINE Alu -32 280 1 1804 161 0 20 chr9 6907117 6907409 -135364035 - AluJo SINE Alu -17 295 10 1544 165 0 26 chr9 6907536 6907714 -135363730 - AluJb SINE Alu -2 310 140 1934 124 39 0 chr9 6907714 6907997 -135363447 - AluSx SINE Alu -18 294 1 1544 165 0 26 chr9 6907997 6908091 -135363353 - AluJb SINE Alu -172 140 45 1869 151 24 10 chr9 6908123 6908421 -135363023 + AluSx SINE Alu 3 304 -8 2385 79 0 3 chr9 6908451 6908743 -135362701 - AluY SINE Alu -20 291 1 605 289 73 50 chr9 6909160 6909503 -135361941 + HAL1 LINE L1 1 351 -2156 686 228 159 38 chr9 6909545 6909940 -135361504 + HAL1 LINE L1 1728 2170 -337 317 259 265 24 chr9 6909988 6910154 -135361290 + MIR SINE MIR 17 222 -40 280 229 141 65 chr9 6910232 6910402 -135361042 + HAL1 LINE L1 2305 2487 -20 419 235 17 9 chr9 6910525 6910640 -135360804 - L1MC5 LINE L1 -102 7859 7744 306 323 8 24 chr9 6910717 6910841 -135360603 + LTR16B LTR ERVL 34 155 -309 265 321 28 9 chr9 6910939 6911048 -135360396 + LTR16B LTR ERVL 292 402 -62 637 249 121 66 chr9 6911094 6911113 -135360331 - L1MC5 LINE L1 -254 7707 7690 2438 175 68 68 chr9 6911113 6911673 -135359771 + MER68 LTR ERV1 3 562 0 637 249 121 66 chr9 6911673 6912091 -135359353 - L1MC5 LINE L1 -271 7690 7246 416 201 179 80 chr9 6912165 6912560 -135358884 - L1MC5 LINE L1 -888 6920 6563 2227 53 36 13 chr9 6913021 6913325 -135358119 - AluY SINE Alu 0 311 1 237 33 0 0 chr9 6913328 6913358 -135358086 + (TTG)n Simple_repeat Simple_repeat 1 30 0 822 74 0 50 chr9 6913358 6913464 -135357980 - AluSc SINE Alu -32 277 174 254 243 0 27 chr9 6913525 6913599 -135357845 + (TA)n Simple_repeat Simple_repeat 1 72 0 890 281 91 12 chr9 6913600 6914017 -135357427 - L1MC5 LINE L1 -1883 5925 5476 212 298 114 23 chr9 6914277 6914408 -135357036 - L2 LINE L2 -913 2401 2259 1812 123 0 11 chr9 6915214 6915474 -135355970 + AluY SINE Alu 40 296 -15 425 300 79 11 chr9 6915564 6915754 -135355690 - MIR SINE MIR 0 262 60 914 189 86 6 chr9 6916398 6916573 -135354871 - MER5A DNA MER1_type 0 189 1 207 0 0 0 chr9 6916685 6916708 -135354736 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 3432 53 0 2 chr9 6916708 6916906 -135354538 - L1PA5 LINE L1 -16 6138 5941 15270 100 24 33 chr9 6916906 6917257 -135354187 - L1MA4A LINE L1 -362 5941 5588 1756 187 7 0 chr9 6917257 6917556 -135353888 + AluJb SINE Alu 1 301 -11 15270 100 24 33 chr9 6917556 6920149 -135351295 - L1MA4A LINE L1 -715 5588 3049 5076 55 12 5 chr9 6920149 6920783 -135350661 + L1PA7 LINE L1 5496 6153 -1 15270 100 24 33 chr9 6920783 6920808 -135350636 - L1MA4A LINE L1 -3254 3049 3025 2283 110 0 0 chr9 6920941 6921241 -135350203 + AluSx SINE Alu 1 300 -12 1577 209 3 0 chr9 6921246 6921543 -135349901 + AluJo SINE Alu 1 298 -14 285 149 14 27 chr9 6922881 6922955 -135348489 + CT-rich Low_complexity Low_complexity 1 73 0 1916 133 4 0 chr9 6922955 6923226 -135348218 - AluSx SINE Alu -40 272 1 304 218 149 0 chr9 6923411 6923498 -135347946 - L1ME LINE L1 -385 5736 5637 22 35 0 0 chr9 6923539 6923568 -135347876 + AT_rich Low_complexity Low_complexity 1 29 0 850 236 6 0 chr9 6923691 6923873 -135347571 + MER58A DNA MER1_type 42 224 0 21 0 0 0 chr9 6923875 6923896 -135347548 + AT_rich Low_complexity Low_complexity 1 21 0 2215 115 0 0 chr9 6924191 6924479 -135346965 + AluSg SINE Alu 1 288 -22 2107 118 7 3 chr9 6924554 6924850 -135346594 + AluSp SINE Alu 1 297 -16 1854 155 3 3 chr9 6925026 6925323 -135346121 - AluSx SINE Alu -13 299 3 22 0 0 0 chr9 6925325 6925347 -135346097 + AT_rich Low_complexity Low_complexity 1 22 0 732 256 105 49 chr9 6925406 6926358 -135345086 - L1ME LINE L1 -402 5768 4759 301 327 99 6 chr9 6926454 6926766 -135344678 - L1ME LINE L1 -1800 4346 4006 729 265 161 12 chr9 6926774 6927291 -135344153 - L1ME LINE L1 -2381 3765 3172 1040 118 0 0 chr9 6927673 6927809 -135343635 + AluSq/x SINE Alu 1 136 -177 2277 121 0 6 chr9 6927810 6928124 -135343320 + AluSx SINE Alu 1 312 0 728 247 103 0 chr9 6928288 6928482 -135342962 + L2 LINE L2 2864 3077 -236 2132 85 4 4 chr9 6929997 6930268 -135341176 - AluY SINE Alu -40 271 1 1921 141 0 35 chr9 6931192 6931505 -135339939 - AluJb SINE Alu -10 302 1 356 143 14 0 chr9 6931505 6931575 -135339869 + L1MD2 LINE L1 6289 6359 0 2054 136 3 10 chr9 6931666 6931797 -135339647 + AluSx SINE Alu 5 135 -177 2086 151 0 0 chr9 6931797 6932108 -135339336 + AluSq SINE Alu 1 311 -2 2054 136 3 10 chr9 6932108 6932286 -135339158 + AluSx SINE Alu 135 312 0 188 377 124 22 chr9 6933000 6933501 -135337943 + L2 LINE L2 2380 2931 -383 873 81 15 37 chr9 6933645 6933781 -135337663 - FLAM_C SINE Alu 0 133 1 315 253 33 11 chr9 6933990 6934081 -135337363 + L2 LINE L2 2377 2469 -845 282 240 145 45 chr9 6934244 6934371 -135337073 + HAL1 LINE L1 2129 2285 -222 2511 80 3 0 chr9 6934371 6934682 -135336762 + AluSp SINE Alu 1 312 -1 282 240 145 45 chr9 6934682 6934754 -135336690 + HAL1 LINE L1 2285 2348 -159 1104 195 73 41 chr9 6934755 6935001 -135336443 + AluJb SINE Alu 1 254 -58 228 321 0 0 chr9 6935001 6935054 -135336390 + G-rich Low_complexity Low_complexity 1 53 0 1334 174 51 68 chr9 6935185 6935479 -135335965 + AluJo SINE Alu 21 309 -3 2414 94 3 0 chr9 6935552 6935860 -135335584 + AluSp SINE Alu 1 309 -4 25 51 0 0 chr9 6935870 6935909 -135335535 + AT_rich Low_complexity Low_complexity 1 39 0 1424 181 55 66 chr9 6935939 6936193 -135335251 - MER2 DNA MER2_type 0 344 94 2194 120 3 0 chr9 6936193 6936492 -135334952 - AluSx SINE Alu -7 305 6 1424 181 55 66 chr9 6936492 6936585 -135334859 - MER2 DNA MER2_type -250 94 1 2195 84 38 3 chr9 6936656 6936943 -135334501 + AluY SINE Alu 1 297 -14 1306 173 47 17 chr9 6938562 6938911 -135332533 - L1MC/D LINE L1 -517 5663 5290 368 272 158 16 chr9 6939305 6939489 -135331955 + MIR SINE MIR 49 258 -4 2149 144 0 0 chr9 6939515 6939814 -135331630 + AluSx SINE Alu 1 299 -13 538 191 122 63 chr9 6940364 6940553 -135330891 + MIR SINE MIR 13 212 -50 841 161 0 15 chr9 6941066 6941203 -135330241 - FLAM_C SINE Alu -8 135 1 23 54 0 0 chr9 6943420 6943457 -135327987 + AT_rich Low_complexity Low_complexity 1 37 0 21 0 0 0 chr9 6944488 6944509 -135326935 + AT_rich Low_complexity Low_complexity 1 21 0 2015 137 0 3 chr9 6944704 6944997 -135326447 - AluSx SINE Alu -20 292 1 198 0 0 0 chr9 6945157 6945179 -135326265 + (A)n Simple_repeat Simple_repeat 1 22 0 684 259 153 35 chr9 6946211 6946392 -135325052 - L1ME4a LINE L1 -7 6114 5956 1528 174 0 33 chr9 6946392 6946668 -135324776 - AluJo SINE Alu -45 267 1 684 259 153 35 chr9 6946668 6947023 -135324421 - L1ME4a LINE L1 -165 5956 5515 358 143 0 0 chr9 6947371 6947427 -135324017 + AluS SINE Alu 2 57 -251 * 5456 117 56 32 chr9 6947425 6947522 -135323922 + Tigger3b DNA MER2_type 191 284 -2744 2044 126 0 0 chr9 6947522 6947836 -135323608 - AluSx SINE Alu 0 314 1 5456 117 56 32 chr9 6947836 6948016 -135323428 + Tigger3b DNA MER2_type 284 458 -2570 1788 154 7 30 chr9 6948016 6948315 -135323129 + AluJb SINE Alu 1 292 -20 5456 117 56 32 chr9 6948315 6948576 -135322868 + Tigger3b DNA MER2_type 458 711 -2317 2249 109 0 0 chr9 6948576 6948870 -135322574 + AluSx SINE Alu 2 295 -17 5456 117 56 32 chr9 6948870 6949345 -135322099 + Tigger3b DNA MER2_type 711 1231 0 2315 96 7 0 chr9 6949395 6949696 -135321748 - AluSp SINE Alu -9 304 2 558 280 58 13 chr9 6949856 6950081 -135321363 - AluSg/x SINE Alu -12 300 66 2744 149 30 20 chr9 6950530 6951068 -135320376 + L1MA4 LINE L1 5750 6292 -8 21 0 0 0 chr9 6951068 6951089 -135320355 + AT_rich Low_complexity Low_complexity 1 21 0 21 82 0 0 chr9 6951894 6951943 -135319501 + AT_rich Low_complexity Low_complexity 1 49 0 2177 130 3 0 chr9 6952081 6952389 -135319055 - AluSx SINE Alu -3 309 1 410 247 55 22 chr9 6952798 6952980 -135318464 - L1MC5 LINE L1 -444 7517 7330 649 208 29 29 chr9 6952995 6953168 -135318276 + MER58B DNA MER1_type 169 341 0 1223 225 143 54 chr9 6953180 6953908 -135317536 - L1MC5 LINE L1 -630 7331 6543 502 221 52 100 chr9 6954614 6954845 -135316599 + L1ME1 LINE L1 5944 6163 -1 594 200 0 17 chr9 6955094 6955209 -135316235 - MLT1F LTR MaLR -85 457 345 763 256 29 33 chr9 6955221 6955463 -135315981 - MLT1F LTR MaLR -301 241 1 1454 295 185 35 chr9 6955878 6957014 -135314430 - L2 LINE L2 -526 2788 1483 181 311 16 0 chr9 6957460 6957521 -135313923 + MIR SINE MIR 180 241 -21 255 343 113 64 chr9 6957576 6957985 -135313459 - L2 LINE L2 -225 3047 2596 2301 103 0 3 chr9 6958396 6958688 -135312756 - AluSp SINE Alu -22 291 1 1916 114 0 11 chr9 6958688 6958951 -135312493 - AluSx SINE Alu -21 291 32 6861 112 12 9 chr9 6959238 6960670 -135310774 + L1MA1 LINE L1 4869 6302 0 1879 218 95 57 chr9 6960687 6961734 -135309710 + L1MD2 LINE L1 5241 6344 -15 2378 95 0 3 chr9 6961737 6962041 -135309403 + AluSx SINE Alu 1 303 -9 1627 207 111 53 chr9 6962763 6963275 -135308169 - MLT1F LTR MaLR 0 542 1 1566 161 4 12 chr9 6963389 6963637 -135307807 + AluJb SINE Alu 1 246 -66 978 282 108 5 chr9 6963719 6964088 -135307356 - MLT1I LTR MaLR -2 407 1 695 221 202 19 chr9 6964143 6964450 -135306994 + L1ME LINE L1 5452 5814 -350 387 245 106 59 chr9 6965310 6965547 -135305897 + L1MC5 LINE L1 7246 7493 -468 2687 23 0 0 chr9 6965587 6965887 -135305557 - AluYa5 SINE Alu -11 300 1 232 218 149 0 chr9 6966072 6966159 -135305285 - L1ME LINE L1 -385 5736 5637 22 35 0 0 chr9 6966200 6966229 -135305215 + AT_rich Low_complexity Low_complexity 1 29 0 920 236 6 0 chr9 6966352 6966534 -135304910 + MER58A DNA MER1_type 42 224 0 21 0 0 0 chr9 6966536 6966557 -135304887 + AT_rich Low_complexity Low_complexity 1 21 0 2229 115 0 0 chr9 6966852 6967140 -135304304 + AluSg SINE Alu 1 288 -22 2114 119 7 3 chr9 6967215 6967510 -135303934 + AluSp SINE Alu 1 296 -17 1851 158 3 3 chr9 6967686 6967983 -135303461 - AluSx SINE Alu -13 299 3 22 0 0 0 chr9 6967985 6968007 -135303437 + AT_rich Low_complexity Low_complexity 1 22 0 909 256 105 49 chr9 6968067 6969019 -135302425 - L1ME LINE L1 -402 5751 4742 388 320 99 6 chr9 6969115 6969427 -135302017 - L1ME LINE L1 -1800 4329 3989 916 264 160 11 chr9 6969435 6969955 -135301489 - L1ME LINE L1 -2381 3748 3152 1044 118 0 0 chr9 6970334 6970470 -135300974 + AluSq/x SINE Alu 1 136 -177 2217 127 0 6 chr9 6970471 6970785 -135300659 + AluSx SINE Alu 1 312 0 576 259 73 54 chr9 6970947 6971220 -135300224 + L2 LINE L2 2864 3145 -168 1719 203 97 32 chr9 6971220 6971694 -135299750 - MLT1D LTR MaLR 0 505 1 576 259 73 54 chr9 6971694 6971733 -135299711 + L2 LINE L2 3145 3182 -131 198 0 0 0 chr9 6971809 6971831 -135299613 + (T)n Simple_repeat Simple_repeat 1 22 0 252 339 15 31 chr9 6971950 6972080 -135299364 - L1ME LINE L1 -5553 566 439 562 248 29 79 chr9 6973517 6973764 -135297680 - L1MC5 LINE L1 -37 7924 7691 1613 205 0 3 chr9 6973764 6974061 -135297383 + AluJb SINE Alu 1 296 -16 562 248 29 79 chr9 6974061 6974091 -135297353 - L1MC5 LINE L1 -270 7691 7661 255 221 91 0 chr9 6974138 6974215 -135297229 - U13 snRNA snRNA -2 102 19 32 86 0 0 chr9 6974550 6974631 -135296813 + AT_rich Low_complexity Low_complexity 1 81 0 180 262 119 32 chr9 6974683 6974809 -135296635 - MIR SINE MIR -55 153 17 216 163 0 0 chr9 6974928 6974971 -135296473 + A-rich Low_complexity Low_complexity 1 43 0 304 204 11 45 chr9 6975178 6975266 -135296178 + MIR SINE MIR 96 180 -82 223 57 86 0 chr9 6975367 6975402 -135296042 + L2 LINE L2 3017 3054 -259 189 0 0 0 chr9 6975995 6976016 -135295428 + (TC)n Simple_repeat Simple_repeat 2 22 0 2293 114 0 3 chr9 6976371 6976678 -135294766 + AluSx SINE Alu 2 307 -5 23 33 0 0 chr9 6977090 6977120 -135294324 + AT_rich Low_complexity Low_complexity 1 30 0 2243 116 0 0 chr9 6977177 6977479 -135293965 + AluSg SINE Alu 2 303 -7 1881 138 0 28 chr9 6977490 6977781 -135293663 + AluSx SINE Alu 1 283 -29 2387 103 0 0 chr9 6978376 6978678 -135292766 + AluSq SINE Alu 1 302 -11 26 30 0 0 chr9 6978693 6978726 -135292718 + AT_rich Low_complexity Low_complexity 1 33 0 258 280 49 21 chr9 6978890 6979033 -135292411 + L1M4 LINE L1 4599 4745 -1401 2733 167 5 92 chr9 6979034 6979608 -135291836 - MER44D DNA MER2_type 0 605 27 1468 213 119 20 chr9 6979618 6980065 -135291379 + L1M4 LINE L1 4744 5234 -912 387 291 17 26 chr9 6980548 6980665 -135290779 + LTR67 LTR ERVL 432 547 -10 420 129 0 0 chr9 6980933 6980995 -135290449 + AluSp SINE Alu 137 198 -115 2010 116 0 34 chr9 6980995 6981287 -135290157 + AluSx SINE Alu 23 304 -8 450 131 7 189 chr9 6981946 6982030 -135289414 + MER5A DNA MER1_type 1 46 -143 1965 103 41 0 chr9 6982030 6982301 -135289143 + AluSx SINE Alu 31 312 0 450 131 7 189 chr9 6982301 6982369 -135289075 + MER5A DNA MER1_type 46 125 -64 302 233 103 43 chr9 6982574 6982690 -135288754 + MER117 DNA MER1_type 53 175 -22 1199 128 0 22 chr9 6982857 6983037 -135288407 + AluSg/x SINE Alu 134 309 -3 440 227 0 42 chr9 6983055 6983174 -135288270 - MER5B DNA MER1_type -64 114 1 968 181 39 6 chr9 6983182 6983364 -135288080 + MER5A DNA MER1_type 2 189 0 1779 171 6 16 chr9 6983938 6984253 -135287191 - MLT1A1 LTR MaLR 0 365 54 1363 106 5 0 chr9 6984259 6984448 -135286996 - AluSq SINE Alu -1 312 123 253 278 195 73 chr9 6985135 6985291 -135286153 + MIR SINE MIR 33 221 -41 2197 115 3 13 chr9 6985291 6985603 -135285841 + AluSq SINE Alu 1 309 -4 253 278 195 73 chr9 6985603 6985651 -135285793 + MIR SINE MIR 221 262 0 495 273 67 70 chr9 6985888 6986116 -135285328 + MLT1J LTR MaLR 1 229 -282 2426 97 0 3 chr9 6986116 6986426 -135285018 - AluSx SINE Alu -3 309 1 495 273 67 70 chr9 6986426 6986553 -135284891 + MLT1J LTR MaLR 229 355 -156 2193 125 3 0 chr9 6987953 6988249 -135283195 + AluSp SINE Alu 1 297 -16 2156 67 103 0 chr9 6988307 6988589 -135282855 + AluY SINE Alu 1 311 0 418 298 123 21 chr9 6990688 6991111 -135280333 + L1ME4a LINE L1 5635 6100 -21 200 139 0 28 chr9 6991196 6991232 -135280212 - MIR SINE MIR -110 152 118 1679 177 42 0 chr9 6991407 6991695 -135279749 - AluJb SINE Alu -12 300 1 201 255 0 0 chr9 6991766 6991813 -135279631 - MER5A DNA MER1_type 0 189 143 253 317 67 29 chr9 6991854 6991873 -135279571 - L1MC4 LINE L1 -1 8041 8024 1894 155 3 20 chr9 6991873 6992170 -135279274 + AluJb SINE Alu 1 292 -20 253 317 67 29 chr9 6992170 6992358 -135279086 - L1MC4 LINE L1 -18 8024 7826 404 202 1 0 chr9 6992400 6992482 -135278962 - L1ME2 LINE L1 -22 6140 6058 243 304 89 0 chr9 6992599 6992711 -135278733 + MER5A DNA MER1_type 43 164 -25 243 282 39 13 chr9 6992643 6992721 -135278723 - MER5A DNA MER1_type -85 104 25 251 109 43 0 chr9 6992916 6992962 -135278482 - L2 LINE L2 -2 3311 3264 2053 127 0 3 chr9 6993572 6993855 -135277589 + AluSx SINE Alu 1 282 -30 21 0 0 0 chr9 6993882 6993903 -135277541 + AT_rich Low_complexity Low_complexity 1 21 0 227 132 26 0 chr9 6995211 6995249 -135276195 - Tigger4(Zombi) DNA MER2_type -2646 85 47 743 210 21 0 chr9 6995252 6995395 -135276049 + AluSq/x SINE Alu 2 147 -165 565 143 0 11 chr9 6995395 6995486 -135275958 + AluJb SINE Alu 210 299 -3 1991 136 3 17 chr9 6995917 6996218 -135275226 + AluSx SINE Alu 1 297 -15 2367 85 0 0 chr9 6996336 6996629 -135274815 + AluSc SINE Alu 1 293 -16 1800 138 14 18 chr9 6996629 6996912 -135274532 - AluJb SINE Alu -28 284 3 1954 167 3 3 chr9 6996980 6997286 -135274158 + AluJb SINE Alu 1 306 -6 1381 185 8 0 chr9 6997426 6997664 -135273780 + AluJo SINE Alu 56 295 -17 210 239 120 35 chr9 6999298 6999440 -135272004 + L2 LINE L2 2725 2878 -436 2321 117 0 0 chr9 6999762 7000071 -135271373 + AluSx SINE Alu 1 309 -3 255 273 112 25 chr9 7001304 7001465 -135269979 - MER5B DNA MER1_type 0 178 4 1973 128 3 72 chr9 7004904 7005239 -135266205 + AluSx SINE Alu 1 312 0 183 218 109 0 chr9 7005372 7005427 -135266017 - MIR SINE MIR -61 147 87 2264 121 0 3 chr9 7005928 7006241 -135265203 + AluSx SINE Alu 1 312 0 1584 94 49 8 chr9 7006475 7006720 -135264724 + L1MA5A LINE L1 6040 6294 -3 2359 94 0 3 chr9 7006731 7007038 -135264406 + AluSc SINE Alu 1 306 -3 2378 100 0 0 chr9 7008650 7008959 -135262485 + AluSq SINE Alu 1 309 -4 2107 96 55 17 chr9 7008968 7009260 -135262184 + AluSg SINE Alu 1 303 -7 22 0 0 0 chr9 7010054 7010076 -135261368 + AT_rich Low_complexity Low_complexity 1 22 0 2064 187 85 13 chr9 7010153 7010624 -135260820 + MLT1D LTR MaLR 1 505 0 2071 139 0 0 chr9 7010785 7011079 -135260365 + AluSx SINE Alu 1 294 -18 184 290 48 0 chr9 7011565 7011627 -135259817 + MIR SINE MIR 193 257 -5 2236 104 0 3 chr9 7011987 7012276 -135259168 - AluSx SINE Alu -21 291 4 183 255 106 43 chr9 7013140 7013234 -135258210 + L2 LINE L2 3173 3272 0 368 242 53 11 chr9 7013272 7013367 -135258077 + FRAM SINE Alu 1 99 -67 2359 97 0 7 chr9 7013382 7013682 -135257762 + AluSx SINE Alu 1 298 -14 238 232 91 40 chr9 7014320 7014419 -135257025 - L2 LINE L2 0 3313 3210 22 35 0 0 chr9 7017960 7017989 -135253455 + AT_rich Low_complexity Low_complexity 1 29 0 1803 165 17 3 chr9 7018900 7019197 -135252247 - AluJb SINE Alu -11 301 1 471 306 97 26 chr9 7021062 7021341 -135250103 + L2 LINE L2 2776 3082 -231 650 188 20 0 chr9 7021366 7021467 -135249977 - FLAM_A SINE Alu -28 114 12 279 269 185 0 chr9 7021468 7021598 -135249846 + L2 LINE L2 3113 3266 -47 1861 140 3 7 chr9 7021878 7022187 -135249257 - AluSx SINE Alu 0 308 1 23 33 0 0 chr9 7022198 7022228 -135249216 + AT_rich Low_complexity Low_complexity 1 30 0 2498 71 0 0 chr9 7022907 7023216 -135248228 - AluY SINE Alu -2 309 1 779 186 76 0 chr9 7023249 7023421 -135248023 - L1MA4 LINE L1 -6 6294 6110 180 219 0 0 chr9 7024160 7024201 -135247243 + (TA)n Simple_repeat Simple_repeat 2 42 0 1836 160 7 3 chr9 7024201 7024488 -135246956 - AluSx SINE Alu -24 288 1 240 299 43 43 chr9 7024667 7024784 -135246660 - MIR SINE MIR -116 146 30 1901 122 3 24 chr9 7026109 7026405 -135245039 - AluSq SINE Alu -23 290 1 2825 220 73 19 chr9 7026405 7027437 -135244007 - L1MDa LINE L1 -4399 2141 901 321 278 179 77 chr9 7027731 7027965 -135243479 - L1MDa LINE L1 -6129 411 154 1991 120 0 11 chr9 7028130 7028441 -135243003 - AluSc SINE Alu 0 308 1 2031 118 54 0 chr9 7028692 7028988 -135242456 + AluSq SINE Alu 1 312 -1 10082 46 2 11 chr9 7029323 7031291 -135240153 - L1PA5 LINE L1 -1 6153 4197 1643 131 14 137 chr9 7031517 7031731 -135239713 - AluYb8 SINE Alu 0 308 152 2410 60 10 7 chr9 7031731 7032031 -135239413 - AluY SINE Alu -10 301 1 1643 131 14 137 chr9 7032031 7032167 -135239277 - AluYb8 SINE Alu -156 152 1 531 253 145 60 chr9 7032189 7032924 -135238520 - L1MEd LINE L1 -839 1651 754 2061 112 4 0 chr9 7033379 7033675 -135237769 - AluSg SINE Alu 0 299 3 331 280 60 0 chr9 7034041 7034141 -135237303 - MIR SINE MIR -108 154 49 802 137 8 8 chr9 7034273 7034404 -135237040 + FLAM_C SINE Alu 1 131 -12 1977 110 0 55 chr9 7034518 7034872 -135236572 - AluSx SINE Alu 0 312 1 2165 79 3 60 chr9 7034883 7035200 -135236244 - AluY SINE Alu -12 299 1 1615 197 14 0 chr9 7035425 7035709 -135235735 + AluJb SINE Alu 9 296 -16 1464 93 67 44 chr9 7036650 7036772 -135234672 + MER30 DNA MER1_type 1 132 -98 2131 127 0 3 chr9 7036772 7037072 -135234372 - AluSx SINE Alu -13 299 1 1464 93 67 44 chr9 7037072 7037174 -135234270 + MER30 DNA MER1_type 132 230 0 2236 123 0 0 chr9 7037801 7038102 -135233342 - AluSx SINE Alu -11 301 1 400 187 44 0 chr9 7038965 7039056 -135232388 + L1MB4 LINE L1 6081 6175 -5 429 100 50 10 chr9 7039123 7039223 -135232221 + (TA)n Simple_repeat Simple_repeat 2 105 0 2160 122 7 0 chr9 7039391 7039694 -135231750 - AluSx SINE Alu -7 305 1 2360 106 0 3 chr9 7039705 7040017 -135231427 - AluSx SINE Alu -1 311 1 324 228 0 0 chr9 7040018 7040075 -135231369 - MLT1A2 LTR MaLR -317 57 1 236 261 100 39 chr9 7040807 7040937 -135230507 - HAL1b LINE L1 -8 1340 1203 255 288 45 0 chr9 7041063 7041174 -135230270 - L1 LINE L1 -2990 3156 3041 1154 180 48 0 chr9 7041174 7041380 -135230064 - AluJo SINE Alu -10 302 87 301 125 42 0 chr9 7041380 7041428 -135230016 - Alu SINE Alu -8 294 245 312 312 71 7 chr9 7041539 7041680 -135229764 - L1M4 LINE L1 -2932 3214 3065 763 180 47 0 chr9 7041872 7042000 -135229444 - AluJo SINE Alu -176 136 3 3388 141 37 8 chr9 7042594 7043104 -135228340 + LTR45 LTR ERV1 1 525 0 258 322 76 64 chr9 7043361 7043532 -135227912 + LTR16C LTR ERVL 78 250 -241 885 272 35 31 chr9 7043537 7043827 -135227617 + LTR16C LTR ERVL 201 491 0 5114 157 14 34 chr9 7044192 7044283 -135227161 + L1MB3 LINE L1 5173 5264 -919 2211 122 3 0 chr9 7044283 7044587 -135226857 + AluSx SINE Alu 1 305 -7 2078 116 0 7 chr9 7044587 7044880 -135226564 + AluSx SINE Alu 1 292 -20 5114 157 14 34 chr9 7044880 7044897 -135226547 + L1MB3 LINE L1 5263 5279 -904 2531 53 0 0 chr9 7044897 7045196 -135226248 + AluY SINE Alu 1 299 -12 5114 157 14 34 chr9 7045196 7045742 -135225702 + L1MB3 LINE L1 5279 5807 -376 1737 179 0 3 chr9 7045742 7046039 -135225405 + AluJb SINE Alu 1 296 -16 5114 157 14 34 chr9 7046039 7046407 -135225037 + L1MB3 LINE L1 5807 6181 -2 695 145 36 114 chr9 7047327 7047520 -135223924 - MER5B DNA MER1_type 0 178 1 259 208 14 69 chr9 7047999 7048071 -135223373 - MER5A DNA MER1_type -113 76 9 366 85 0 0 chr9 7048182 7048241 -135223203 + (TATG)n Simple_repeat Simple_repeat 2 60 0 479 196 101 101 chr9 7048299 7048363 -135223081 - MER5A DNA MER1_type 0 189 126 2388 93 3 0 chr9 7048363 7048675 -135222769 + AluSp SINE Alu 1 313 0 479 196 101 101 chr9 7048675 7048799 -135222645 - MER5A DNA MER1_type -62 127 1 202 276 207 11 chr9 7048819 7048906 -135222538 - MIR SINE MIR -68 140 37 680 277 62 56 chr9 7048979 7049468 -135221976 + MLT1G1 LTR MaLR 1 549 0 208 269 0 0 chr9 7049668 7049720 -135221724 + (TAA)n Simple_repeat Simple_repeat 3 54 0 567 252 49 0 chr9 7049723 7049866 -135221578 - MIR SINE MIR -29 233 84 595 208 8 54 chr9 7050032 7050162 -135221282 + FLAM_A SINE Alu 1 124 -9 29 0 0 0 chr9 7050519 7050548 -135220896 + AT_rich Low_complexity Low_complexity 1 29 0 267 31 0 0 chr9 7051757 7051789 -135219655 + (TTTA)n Simple_repeat Simple_repeat 1 32 0 1703 166 18 3 chr9 7051792 7052076 -135219368 - AluJb SINE Alu -24 288 1 2435 78 0 10 chr9 7052365 7052673 -135218771 - AluSq SINE Alu -8 305 1 232 122 73 0 chr9 7053183 7053224 -135218220 + MER57A LTR ERV1 295 338 -65 1586 205 3 10 chr9 7053245 7053548 -135217896 + AluJb SINE Alu 5 305 -7 2209 97 10 0 chr9 7053616 7053916 -135217528 - AluY SINE Alu -8 303 1 22 35 0 0 chr9 7053974 7054003 -135217441 + AT_rich Low_complexity Low_complexity 1 29 0 755 168 0 8 chr9 7054003 7054122 -135217322 - FLAM_C SINE Alu -15 118 1 4080 173 43 8 chr9 7054180 7054932 -135216512 - L1MB7 LINE L1 -16 6168 5391 797 176 0 0 chr9 7054972 7055103 -135216341 - FLAM_C SINE Alu -3 140 10 750 199 27 20 chr9 7055742 7055888 -135215556 - FRAM SINE Alu -30 146 1 661 153 6 6 chr9 7056715 7056878 -135214566 + CT-rich Low_complexity Low_complexity 3 165 0 1919 148 4 0 chr9 7056879 7057157 -135214287 - AluSx SINE Alu -33 279 1 254 253 99 49 chr9 7057267 7057429 -135214015 + L1MC/D LINE L1 5309 5478 -2330 699 209 16 0 chr9 7057447 7057576 -135213868 + FLAM_A SINE Alu 1 131 -2 2308 113 0 0 chr9 7057578 7057879 -135213565 + AluSx SINE Alu 1 301 -11 1616 188 7 36 chr9 7057969 7058273 -135213171 + AluJo SINE Alu 1 295 -17 27 0 0 0 chr9 7058275 7058302 -135213142 + AT_rich Low_complexity Low_complexity 1 27 0 2176 116 3 22 chr9 7059680 7059999 -135211445 + AluSp SINE Alu 1 313 0 1647 177 10 35 chr9 7060333 7060644 -135210800 + AluJo SINE Alu 1 303 -9 1790 169 23 10 chr9 7060644 7060951 -135210493 + AluSx SINE Alu 1 312 0 2231 117 0 0 chr9 7061141 7061440 -135210004 + AluSg SINE Alu 1 299 -11 1597 178 0 21 chr9 7061893 7062179 -135209265 - AluJb SINE Alu -32 280 1 216 97 0 0 chr9 7062268 7062299 -135209145 + (TGAA)n Simple_repeat Simple_repeat 1 31 0 2094 80 88 0 chr9 7062626 7062900 -135208544 - AluSx SINE Alu -13 299 2 270 244 178 39 chr9 7063096 7063194 -135208250 - MER2 DNA MER2_type -16 329 246 2289 118 0 0 chr9 7063194 7063500 -135207944 + AluSx SINE Alu 1 306 -6 270 244 178 39 chr9 7063500 7063581 -135207863 - MER2 DNA MER2_type -99 246 125 857 186 48 14 chr9 7063583 7063728 -135207716 + AluJb SINE Alu 2 151 -161 344 164 14 82 chr9 7063721 7063781 -135207663 + AluS SINE Alu 223 279 -23 * 244 0 0 0 chr9 7063781 7063808 -135207636 + (TAAA)n Simple_repeat Simple_repeat 2 144 0 344 164 14 82 chr9 7063808 7063820 -135207624 + AluS SINE Alu 279 290 -12 2204 120 3 0 chr9 7063967 7064276 -135207168 - AluSg SINE Alu 0 310 1 201 74 0 0 chr9 7064277 7064304 -135207140 + (TTTTC)n Simple_repeat Simple_repeat 2 28 0 298 170 0 0 chr9 7065161 7065208 -135206236 - L2 LINE L2 0 3313 3267 2246 77 0 10 chr9 7066274 7066587 -135204857 + AluY SINE Alu 1 310 -1 1958 87 37 24 chr9 7067039 7067337 -135204107 + AluSq SINE Alu 1 302 -11 1923 114 4 0 chr9 7067549 7067869 -135203575 + AluSx SINE Alu 1 321 0 907 158 0 74 chr9 7067873 7068075 -135203369 - AluJb SINE Alu -2 310 124 1710 168 21 0 chr9 7068089 7068375 -135203069 + AluJb SINE Alu 1 292 -20 2274 72 0 28 chr9 7068380 7068700 -135202744 + AluY SINE Alu 1 311 0 2177 59 0 21 chr9 7068707 7069046 -135202398 + AluY SINE Alu 1 333 0 331 224 0 0 chr9 7069459 7069526 -135201918 + L1ME LINE L1 5619 5685 -436 845 75 17 0 chr9 7069643 7069763 -135201681 + AluSp/q SINE Alu 181 302 -11 1381 96 0 10 chr9 7069763 7069960 -135201484 + AluY SINE Alu 1 195 -116 642 0 0 0 chr9 7069960 7070031 -135201413 + AluY SINE Alu 62 132 -179 1956 115 0 3 chr9 7070035 7070331 -135201113 + AluY SINE Alu 1 295 -16 2345 34 7 17 chr9 7070337 7070665 -135200779 + AluY SINE Alu 1 311 0 373 200 44 11 chr9 7071248 7071338 -135200106 - MIR SINE MIR -121 141 49 1587 169 0 44 chr9 7071472 7071791 -135199653 + AluJb SINE Alu 1 305 -7 826 224 0 0 chr9 7071842 7072007 -135199437 + FRAM SINE Alu 1 164 -12 1818 99 4 4 chr9 7072009 7072272 -135199172 + AluSq SINE Alu 1 263 -50 2113 104 0 3 chr9 7072718 7073016 -135198428 - AluSx SINE Alu -15 297 1 525 220 135 21 chr9 7073016 7073157 -135198287 - FRAM SINE Alu -13 163 7 1973 259 96 31 chr9 7073173 7073441 -135198003 + L2 LINE L2 2005 2254 -1060 2045 129 0 0 chr9 7073441 7073752 -135197692 - AluY SINE Alu 0 311 1 1973 259 96 31 chr9 7073752 7074246 -135197198 + L2 LINE L2 2254 2816 -498 597 244 65 57 chr9 7074251 7074481 -135196963 - LTR33 LTR ERVL -2 519 288 273 193 0 0 chr9 7074589 7074646 -135196798 + Alu SINE Alu 245 301 -1 195 42 0 0 chr9 7074900 7074924 -135196520 + (TTTG)n Simple_repeat Simple_repeat 2 25 0 1973 131 3 3 chr9 7075078 7075375 -135196069 - AluSp SINE Alu -16 297 1 2340 81 0 7 chr9 7075375 7075682 -135195762 - AluSx SINE Alu -7 305 1 474 18 0 0 chr9 7075688 7075743 -135195701 + (TTA)n Simple_repeat Simple_repeat 2 56 0 1872 101 4 0 chr9 7075747 7076004 -135195440 - AluSx SINE Alu -32 280 23 1853 136 3 7 chr9 7076012 7076327 -135195117 - AluSx SINE Alu 0 314 1 2161 84 3 0 chr9 7076859 7077178 -135194266 - AluSx SINE Alu 0 320 1 1319 209 17 24 chr9 7077186 7077482 -135193962 - AluJo SINE Alu -18 294 1 966 201 14 5 chr9 7077490 7077699 -135193745 - AluJb SINE Alu 0 312 102 565 147 147 0 chr9 7077699 7077801 -135193643 + FLAM_C SINE Alu 1 117 -26 1882 154 0 3 chr9 7077814 7078125 -135193319 - AluJb SINE Alu -2 310 1 606 213 12 50 chr9 7078302 7078453 -135192991 + AluJb SINE Alu 157 303 -9 1691 169 23 10 chr9 7078453 7078761 -135192683 + AluSx SINE Alu 1 312 0 2276 93 0 0 chr9 7078951 7079253 -135192191 + AluSg1 SINE Alu 1 302 -7 484 240 260 24 chr9 7079253 7079461 -135191983 + Zaphod DNA AcHobo 383 639 -3392 2191 99 3 3 chr9 7079461 7079763 -135191681 + AluSx SINE Alu 1 302 -10 1304 53 0 6 chr9 7079818 7079987 -135191457 + AluY SINE Alu 136 303 -8 252 231 15 0 chr9 7080009 7080074 -135191370 + Zaphod DNA AcHobo 663 728 -3303 1988 119 10 0 chr9 7080074 7080369 -135191075 + AluSx SINE Alu 1 298 -14 2189 179 87 50 chr9 7080378 7080837 -135190607 + MER21A LTR ERV1 386 861 -70 986 186 6 0 chr9 7080837 7081020 -135190424 - AluSg/x SINE Alu -8 304 121 569 168 71 9 chr9 7081296 7081409 -135190035 + FLAM_C SINE Alu 12 131 -12 23 0 0 0 chr9 7081438 7081461 -135189983 + AT_rich Low_complexity Low_complexity 1 23 0 2089 109 0 7 chr9 7081465 7081759 -135189685 - AluSc SINE Alu -17 292 1 2252 74 0 0 chr9 7081764 7082072 -135189372 - AluY SINE Alu 0 308 1 893 186 47 131 chr9 7082078 7082438 -135189006 + MER34C LTR ERV1 256 585 0 1950 128 3 7 chr9 7082557 7082854 -135188590 - AluSx SINE Alu -16 296 1 2404 70 3 0 chr9 7083944 7084246 -135187198 - AluSx SINE Alu -9 303 1 207 0 0 0 chr9 7084258 7084281 -135187163 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 2037 105 7 0 chr9 7084458 7084744 -135186700 - AluSg SINE Alu -21 289 2 2034 111 0 26 chr9 7084949 7085255 -135186189 - AluSx SINE Alu -14 298 1 23 33 0 0 chr9 7085961 7085991 -135185453 + AT_rich Low_complexity Low_complexity 1 30 0 1223 167 77 42 chr9 7086198 7086485 -135184959 + AluJo SINE Alu 1 297 -15 1818 142 10 10 chr9 7086505 7086801 -135184643 - AluSx SINE Alu -16 296 1 870 229 0 0 chr9 7086811 7086986 -135184458 - FAM SINE Alu 0 175 1 1140 107 6 0 chr9 7089234 7089393 -135182051 - AluSp SINE Alu -51 262 103 195 42 0 0 chr9 7089852 7089876 -135181568 + (TTTTC)n Simple_repeat Simple_repeat 2 25 0 2131 105 13 0 chr9 7089880 7090186 -135181258 - AluSx SINE Alu -2 310 1 1675 179 3 3 chr9 7090742 7091054 -135180390 + AluJo SINE Alu 1 312 0 2181 105 0 3 chr9 7091384 7091689 -135179755 - AluSx SINE Alu -4 308 5 902 282 49 8 chr9 7092202 7092447 -135178997 - MIR SINE MIR 0 262 8 227 280 28 28 chr9 7092979 7093086 -135178358 + L1ME4a LINE L1 5967 6073 -48 2371 178 93 8 chr9 7093726 7094232 -135177212 - MER89 LTR ERV1 -10 549 1 261 0 0 0 chr9 7094252 7094281 -135177163 + (TA)n Simple_repeat Simple_repeat 1 29 0 208 232 131 50 chr9 7094886 7094929 -135176515 - L2 LINE L2 -15 3298 3260 2239 99 0 0 chr9 7094929 7095223 -135176221 - AluSg SINE Alu -14 296 3 208 232 131 50 chr9 7095223 7095278 -135176166 - L2 LINE L2 -53 3260 3192 2100 102 9 19 chr9 7095439 7095754 -135175690 + AluSx SINE Alu 1 312 0 2190 99 0 13 chr9 7096161 7096475 -135174969 + AluSg SINE Alu 1 310 0 2109 92 0 0 chr9 7096745 7097026 -135174418 + AluSx SINE Alu 1 281 -31 1611 171 3 13 chr9 7098194 7098493 -135172951 + AluSx SINE Alu 10 305 -7 2276 85 0 0 chr9 7098821 7099115 -135172329 - AluSg SINE Alu -16 294 1 372 22 0 0 chr9 7099446 7099491 -135171953 + (CA)n Simple_repeat Simple_repeat 1 45 0 195 42 0 0 chr9 7099539 7099563 -135171881 + (CCCCCT)n Simple_repeat Simple_repeat 2 25 0 10861 28 20 31 chr9 7099568 7100931 -135170513 + SVA Other Other 38 1385 -1 1856 199 97 21 chr9 7101493 7101924 -135169520 + MLT1C LTR MaLR 1 464 -3 2129 99 0 3 chr9 7102008 7102301 -135169143 + AluSx SINE Alu 5 296 -16 2428 60 0 3 chr9 7104312 7104613 -135166831 + AluY SINE Alu 1 300 -11 747 114 21 6 chr9 7105806 7106051 -135165393 + AluJ SINE Alu 1 294 -18 1927 75 20 0 chr9 7106520 7106774 -135164670 - AluSq SINE Alu -16 297 39 25 0 0 0 chr9 7107100 7107125 -135164319 + AT_rich Low_complexity Low_complexity 1 25 0 207 0 0 0 chr9 7107226 7107249 -135164195 + (TA)n Simple_repeat Simple_repeat 2 24 0 908 132 0 22 chr9 7107251 7107387 -135164057 - FLAM_C SINE Alu 0 133 1 969 91 0 0 chr9 7107457 7107589 -135163855 + AluY SINE Alu 173 304 -7 1442 156 31 28 chr9 7109082 7109371 -135162073 + AluJo SINE Alu 1 290 -22 187 355 106 23 chr9 7110589 7110854 -135160590 + L2 LINE L2 2140 2426 -888 271 261 0 0 chr9 7110872 7110937 -135160507 + LTR16B LTR ERVL 54 118 -346 435 193 45 0 chr9 7110939 7111027 -135160417 + AluS SINE Alu 2 93 -220 631 167 135 26 chr9 7111031 7111187 -135160257 + L1ME3A LINE L1 5693 5865 -305 464 154 0 0 chr9 7112472 7112537 -135158907 - HERVL18 LTR ERVL -3265 2782 2718 * 1206 155 64 2 chr9 7112534 7112794 -135158650 - HERVL18 LTR ERVL -3595 2452 2119 2728 196 14 26 chr9 7112819 7113698 -135157746 - HERVL18 LTR ERVL -4425 1622 56 1205 135 5 25 chr9 7113799 7113999 -135157445 - AluSx SINE Alu -116 196 1 1822 95 91 18 chr9 7114712 7114986 -135156458 + AluSc SINE Alu 2 295 -14 2247 101 13 7 chr9 7116174 7116480 -135154964 - AluSx SINE Alu 0 312 5 1482 197 4 4 chr9 7117038 7117317 -135154127 + AluJo SINE Alu 1 279 -33 360 259 2 0 chr9 7117530 7117620 -135153824 - AluJ/FLAM SINE Alu -227 75 1 2452 86 3 0 chr9 7117737 7118038 -135153406 + AluSp SINE Alu 1 302 -11 1195 38 0 0 chr9 7118038 7118170 -135153274 + AluY SINE Alu 1 132 -179 2363 71 0 7 chr9 7118174 7118471 -135152973 + AluY SINE Alu 1 295 -16 2230 42 46 18 chr9 7118471 7118788 -135152656 + AluY SINE Alu 1 311 0 372 200 44 11 chr9 7119371 7119461 -135151983 - MIR SINE MIR -121 141 49 1785 163 0 44 chr9 7119595 7119914 -135151530 + AluJb SINE Alu 1 305 -7 927 218 0 0 chr9 7119965 7120130 -135151314 + FRAM SINE Alu 1 164 -12 353 64 0 0 chr9 7120132 7120179 -135151265 + Alu SINE Alu 1 47 -255 1560 179 14 7 chr9 7120413 7120703 -135150741 + AluSx SINE Alu 21 312 0 195 42 0 0 chr9 7120706 7120730 -135150714 + (GAAAA)n Simple_repeat Simple_repeat 2 25 0 22 35 0 0 chr9 7122087 7122116 -135149328 + GC_rich Low_complexity Low_complexity 1 29 0 23 0 0 0 chr9 7122457 7122480 -135148964 + AT_rich Low_complexity Low_complexity 1 23 0 1120 90 0 0 chr9 7123391 7123525 -135147919 + AluSq/x SINE Alu 1 134 -178 1455 127 5 9 chr9 7123527 7123740 -135147704 + AluSp SINE Alu 1 212 -101 483 240 202 8 chr9 7123756 7123885 -135147559 - AluJo SINE Alu -38 274 121 524 44 15 0 chr9 7123885 7123953 -135147491 - L1PA8 LINE L1 -319 5853 5785 1966 166 44 70 chr9 7123954 7124272 -135147172 - Tigger7 DNA MER2_type -2062 425 119 2402 89 10 0 chr9 7124272 7124576 -135146868 + AluSp SINE Alu 1 307 -6 1966 166 44 70 chr9 7124576 7124685 -135146759 - Tigger7 DNA MER2_type -2368 119 9 366 310 84 0 chr9 7124709 7124864 -135146580 - L1MCb LINE L1 -5308 737 570 459 286 34 7 chr9 7124956 7125103 -135146341 - L1MCb LINE L1 -5471 574 424 264 176 0 44 chr9 7125105 7125173 -135146271 - L1MCb LINE L1 -5772 273 209 2090 134 0 0 chr9 7125204 7125495 -135145949 - AluSx SINE Alu -8 304 14 404 182 0 0 chr9 7125500 7125577 -135145867 - AluJ/FRAM SINE Alu -7 305 229 684 61 0 0 chr9 7125677 7125759 -135145685 - AluY SINE Alu -228 83 2 * 757 164 16 0 chr9 7125759 7125878 -135145566 + AluSg/x SINE Alu 183 303 -9 1684 162 4 0 chr9 7125893 7126197 -135145247 + AluJb SINE Alu 16 320 0 891 280 15 19 chr9 7126202 7126470 -135144974 + LTR16B LTR ERVL 109 375 -89 181 347 27 0 chr9 7126651 7126726 -135144718 + L2 LINE L2 2872 2948 -324 409 256 0 0 chr9 7127130 7127216 -135144228 + FRAM SINE Alu 77 162 -14 1453 226 7 13 chr9 7127222 7127532 -135143912 + AluJb SINE Alu 3 310 -2 1348 151 29 59 chr9 7127555 7127652 -135143792 + L1MC1 LINE L1 6059 6157 -176 2203 115 7 3 chr9 7127652 7127947 -135143497 + AluSx SINE Alu 1 296 -16 1348 151 29 59 chr9 7127947 7128121 -135143323 + L1MC1 LINE L1 6157 6322 -11 1926 150 10 10 chr9 7128122 7128422 -135143022 + AluJo SINE Alu 1 300 -12 2119 110 0 0 chr9 7128433 7128706 -135142738 + AluSx SINE Alu 3 275 -37 2025 97 6 61 chr9 7128736 7129047 -135142397 + AluSq SINE Alu 3 296 -17 1948 144 6 52 chr9 7129069 7129395 -135142049 - AluSx SINE Alu -1 311 1 725 124 66 25 chr9 7129483 7129604 -135141840 - FLAM_C SINE Alu -4 139 14 1985 153 3 16 chr9 7130083 7130396 -135141048 + AluSx SINE Alu 1 309 -3 1012 207 195 0 chr9 7130726 7130987 -135140457 + MER21B LTR ERV1 1 312 -551 1122 82 0 0 chr9 7130988 7131123 -135140321 + AluSq/x SINE Alu 1 135 -177 2441 77 0 0 chr9 7131123 7131423 -135140021 + AluY SINE Alu 1 300 -11 2226 168 85 78 chr9 7131429 7131888 -135139556 + MER21A LTR ERV1 386 851 -80 1979 148 3 23 chr9 7131888 7132198 -135139246 - AluSx SINE Alu -8 304 1 2226 168 85 78 chr9 7132198 7132280 -135139164 + MER21A LTR ERV1 851 931 0 2157 68 79 7 chr9 7132442 7132722 -135138722 - AluSp SINE Alu -13 300 1 2293 109 0 0 chr9 7132821 7133115 -135138329 - AluSg SINE Alu -15 295 2 194 125 0 25 chr9 7133166 7133206 -135138238 + (GAAAA)n Simple_repeat Simple_repeat 4 42 0 2058 117 11 3 chr9 7133281 7133590 -135137854 + AluSx SINE Alu 1 311 0 388 174 315 0 chr9 7133656 7133748 -135137696 + FLAM_A SINE Alu 1 121 -12 37 0 0 0 chr9 7133969 7134006 -135137438 + AT_rich Low_complexity Low_complexity 1 37 0 888 206 11 29 chr9 7134006 7134145 -135137299 + AluJo SINE Alu 1 138 -174 2479 78 0 0 chr9 7134145 7134440 -135137004 + AluSx SINE Alu 1 295 -17 888 206 11 29 chr9 7134440 7134475 -135136969 + AluJo SINE Alu 138 172 -140 253 200 55 0 chr9 7134483 7134538 -135136906 + FAM SINE Alu 116 173 -2 2182 125 0 0 chr9 7134540 7134837 -135136607 + AluSx SINE Alu 2 298 -14 827 135 0 8 chr9 7134838 7135006 -135136438 + FLAM_C SINE Alu 1 167 0 817 303 135 53 chr9 7135199 7135538 -135135906 + ERVL LTR ERVL 884 1194 -4460 1941 135 36 30 chr9 7135538 7135842 -135135602 + AluJb SINE Alu 3 308 -4 817 303 135 53 chr9 7135842 7136416 -135135028 + ERVL LTR ERVL 1194 1827 -3827 628 139 0 0 chr9 7136537 7136638 -135134806 + AluSg/x SINE Alu 209 309 0 271 163 24 0 chr9 7136638 7136694 -135134750 + AluY SINE Alu 142 188 -113 768 149 8 22 chr9 7136744 7136878 -135134566 - FLAM_C SINE Alu 0 133 2 2249 115 0 0 chr9 7136887 7137183 -135134261 - AluSq SINE Alu -16 297 2 2495 61 3 0 chr9 7137241 7137534 -135133910 - AluY SINE Alu -17 294 1 886 202 60 101 chr9 7137536 7137902 -135133542 + MER34C LTR ERV1 235 585 0 2144 118 3 7 chr9 7138021 7138317 -135133127 - AluSx SINE Alu -17 295 1 2395 86 3 0 chr9 7139406 7139707 -135131737 - AluSx SINE Alu -10 302 1 207 0 0 0 chr9 7139719 7139742 -135131702 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 2175 105 7 0 chr9 7139919 7140205 -135131239 - AluSg SINE Alu -21 289 2 2204 108 0 23 chr9 7140410 7140715 -135130729 - AluSx SINE Alu -14 298 1 264 254 228 9 chr9 7141385 7141499 -135129945 + MIR SINE MIR 82 220 -42 387 60 0 0 chr9 7141544 7141594 -135129850 + (TCC)n Simple_repeat Simple_repeat 2 51 0 1903 139 21 0 chr9 7141634 7141922 -135129522 + AluJb SINE Alu 8 301 -11 1404 14 0 0 chr9 7142074 7142222 -135129222 - AluY SINE Alu -163 148 1 779 251 67 110 chr9 7142725 7142824 -135128620 + MLT1H LTR MaLR 52 154 -395 1946 147 0 0 chr9 7142824 7143110 -135128334 - AluJb SINE Alu -26 286 1 779 251 67 110 chr9 7143110 7143519 -135127925 + MLT1H LTR MaLR 154 538 -11 2279 122 0 0 chr9 7143820 7144115 -135127329 - AluSg SINE Alu -15 295 1 2351 107 3 0 chr9 7144260 7144569 -135126875 - AluSq SINE Alu -3 310 1 1447 150 0 26 chr9 7144577 7144804 -135126640 - AluJo SINE Alu -1 311 91 2193 131 3 0 chr9 7144955 7145260 -135126184 + AluSp SINE Alu 1 306 -7 183 42 0 0 chr9 7145722 7145746 -135125698 + (TAA)n Simple_repeat Simple_repeat 1 24 0 2504 74 3 0 chr9 7145749 7146048 -135125396 - AluSp SINE Alu -13 300 1 1849 146 41 7 chr9 7146056 7146378 -135125066 - AluSx SINE Alu 0 312 1 528 248 101 50 chr9 7146548 7146711 -135124733 + Charlie1 DNA MER1_type 37 213 -2548 2304 81 27 3 chr9 7146711 7147008 -135124436 - AluY SINE Alu -7 304 1 528 248 101 50 chr9 7147008 7147042 -135124402 + Charlie1 DNA MER1_type 213 244 -2517 234 0 0 0 chr9 7147045 7147071 -135124373 + (TTGG)n Simple_repeat Simple_repeat 2 27 0 1726 186 0 24 chr9 7147074 7147240 -135124204 - AluJb SINE Alu -23 289 132 2659 36 13 0 chr9 7147240 7147547 -135123897 - AluY SINE Alu 0 311 1 1726 186 0 24 chr9 7147547 7147676 -135123768 - AluJb SINE Alu -180 132 1 2619 39 3 7 chr9 7147705 7148011 -135123433 + AluY SINE Alu 1 305 -6 2094 113 13 17 chr9 7148033 7148169 -135123275 + AluSx SINE Alu 1 136 -176 2295 106 13 0 chr9 7148169 7148471 -135122973 + AluSp SINE Alu 2 307 -6 2094 113 13 17 chr9 7148471 7148634 -135122810 + AluSx SINE Alu 136 299 -13 188 135 27 0 chr9 7148634 7148671 -135122773 + (TATAA)n Simple_repeat Simple_repeat 1 38 0 1522 171 75 0 chr9 7148676 7148957 -135122487 - AluJo SINE Alu 0 302 1 216 111 0 0 chr9 7149273 7149309 -135122135 + (GGA)n Simple_repeat Simple_repeat 3 38 0 702 197 15 29 chr9 7149580 7149717 -135121727 + AluJo SINE Alu 2 136 -176 2361 103 0 3 chr9 7149729 7150029 -135121415 - AluSc SINE Alu -9 300 2 875 168 0 0 chr9 7150226 7150357 -135121087 + FLAM_C SINE Alu 1 131 -2 2017 147 7 3 chr9 7150467 7150774 -135120670 + AluSx SINE Alu 1 308 -4 186 398 21 0 chr9 7150881 7150974 -135120470 - L2 LINE L2 0 3272 3178 886 129 0 0 chr9 7151247 7151371 -135120073 - AluSg/x SINE Alu -14 296 173 306 177 0 0 chr9 7151530 7151592 -135119852 + AluS SINE Alu 233 294 -8 466 218 44 87 chr9 7151606 7151812 -135119632 + L1MDa LINE L1 1471 1667 -4873 229 195 0 0 chr9 7151812 7151853 -135119591 + MER57A LTR ERV1 296 336 -67 236 286 109 0 chr9 7151864 7151983 -135119461 + L1MDa LINE L1 1638 1769 -4771 737 95 0 0 chr9 7151987 7152082 -135119362 + AluSg SINE Alu 28 122 -188 1725 109 0 0 chr9 7152082 7152311 -135119133 + AluSg/x SINE Alu 82 310 -2 744 154 0 70 chr9 7152406 7152549 -135118895 + FLAM_C SINE Alu 1 133 0 643 221 49 71 chr9 7152589 7152854 -135118590 + L1MDa LINE L1 1860 2119 -4421 2170 118 3 3 chr9 7152854 7153158 -135118286 - AluSc SINE Alu -5 304 1 643 221 49 71 chr9 7153158 7153200 -135118244 + L1MDa LINE L1 2119 2160 -4380 1768 135 12 0 chr9 7153200 7153445 -135117999 + AluSg SINE Alu 50 297 -13 2216 126 0 0 chr9 7153455 7153756 -135117688 + AluSx SINE Alu 1 301 -11 2400 70 0 0 chr9 7153771 7154079 -135117365 + AluY SINE Alu 1 308 0 2284 116 0 6 chr9 7154084 7154395 -135117049 + AluSc SINE Alu 1 309 0 671 156 57 8 chr9 7154426 7154548 -135116896 - FLAM_C SINE Alu -4 139 12 2075 139 0 0 chr9 7154901 7155196 -135116248 + AluSx SINE Alu 1 295 -17 1510 135 0 91 chr9 7155234 7155389 -135116055 + AluJb SINE Alu 3 120 -192 1434 135 138 67 chr9 7155389 7155671 -135115773 + AluSx SINE Alu 1 302 -10 1510 135 0 91 chr9 7155671 7155812 -135115632 + AluJb SINE Alu 120 272 -40 1976 106 8 0 chr9 7155815 7156079 -135115365 - AluSx SINE Alu -46 266 1 432 0 0 0 chr9 7156090 7156138 -135115306 + (TTTAG)n Simple_repeat Simple_repeat 3 50 0 1973 125 18 4 chr9 7156138 7156419 -135115025 - AluSq SINE Alu -28 285 1 1371 88 39 61 chr9 7156419 7156587 -135114857 - L1P4 LINE L1 -664 5501 5331 2324 117 0 10 chr9 7156587 7156895 -135114549 - AluSq SINE Alu -8 305 1 1371 88 39 61 chr9 7156895 7157104 -135114340 - L1P4 LINE L1 -834 5331 5128 256 162 4 70 chr9 7157123 7157188 -135114256 - AluJo SINE Alu -168 134 83 1933 141 3 3 chr9 7157199 7157503 -135113941 - AluSx SINE Alu -6 306 3 602 228 7 0 chr9 7157510 7157646 -135113798 - L1P LINE L1 -1823 4323 4187 6191 96 3 0 chr9 7157650 7158514 -135112930 - THE1B-int LTR MaLR -712 868 2 2202 132 30 28 chr9 7158515 7158878 -135112566 - THE1B LTR MaLR 0 364 1 670 239 112 10 chr9 7158900 7159105 -135112339 - REP3 LTR ERV -47 515 290 2447 85 3 0 chr9 7159680 7159985 -135111459 + AluSp SINE Alu 1 306 -7 2561 183 48 25 chr9 7159986 7160123 -135111321 - HERVL40 LTR ERVL -1084 1953 1821 4270 77 9 0 chr9 7160123 7160672 -135110772 + MER41A LTR ERV1 1 554 0 2561 183 48 25 chr9 7160672 7161098 -135110346 - HERVL40 LTR ERVL -1216 1821 1377 893 101 52 109 chr9 7161122 7161242 -135110202 + MER57B-int LTR ERV1 632 757 -6010 2283 120 0 0 chr9 7161242 7161543 -135109901 - AluSx SINE Alu -11 301 1 893 101 52 109 chr9 7161543 7161726 -135109718 + MER57B-int LTR ERV1 757 2365 -4402 302 93 0 0 chr9 7161726 7161769 -135109675 + Alu SINE Alu 1 43 -260 599 94 0 62 chr9 7161769 7161865 -135109579 - AluS SINE Alu -222 91 2 2528 74 7 0 chr9 7161879 7162188 -135109256 - AluY SINE Alu 0 311 1 3340 82 144 122 chr9 7162193 7162642 -135108802 + MER57B-int LTR ERV1 6788 7261 -276 2538 63 9 25 chr9 7162642 7162960 -135108484 + AluSp SINE Alu 1 313 0 3340 82 144 122 chr9 7162960 7163240 -135108204 + MER57B-int LTR ERV1 7261 7533 -4 2486 121 24 66 chr9 7163244 7163645 -135107799 + MER57B LTR ERV1 1 382 -52 2519 64 0 0 chr9 7163645 7163940 -135107504 - AluY SINE Alu -16 295 1 2486 121 24 66 chr9 7163940 7163991 -135107453 + MER57B LTR ERV1 382 434 0 1828 181 36 48 chr9 7163991 7164144 -135107300 - HERVL40 LTR ERVL -1693 1344 1191 2176 133 0 0 chr9 7164144 7164446 -135106998 - AluSx SINE Alu -10 302 1 1828 181 36 48 chr9 7164446 7164713 -135106731 - HERVL40 LTR ERVL -1846 1191 929 1739 159 17 23 chr9 7164713 7165015 -135106429 - AluJb SINE Alu -12 300 1 2483 87 0 3 chr9 7165040 7165350 -135106094 - AluSg1 SINE Alu 0 309 1 2321 101 0 3 chr9 7165402 7165709 -135105735 - AluSg SINE Alu -4 306 1 2111 134 13 0 chr9 7165721 7166020 -135105424 - AluSg SINE Alu -7 303 1 678 200 13 13 chr9 7166032 7166182 -135105262 - HERVL40 LTR ERVL -2118 919 770 225 0 0 0 chr9 7166182 7166207 -135105237 + (T)n Simple_repeat Simple_repeat 1 25 0 1002 54 15 0 chr9 7166668 7166798 -135104646 - AluY SINE Alu -179 132 1 2126 121 0 0 chr9 7166798 7167105 -135104339 - AluSq SINE Alu -6 307 1 1989 125 3 0 chr9 7167239 7167527 -135103917 + AluSx SINE Alu 1 289 -23 292 163 0 0 chr9 7167992 7168035 -135103409 + MER57A LTR ERV1 295 337 -66 2043 123 16 7 chr9 7168050 7168359 -135103085 + AluSx SINE Alu 1 312 0 1334 127 0 14 chr9 7168364 7168576 -135102868 + AluSg/x SINE Alu 102 310 0 1360 115 0 14 chr9 7168586 7168794 -135102650 + AluSq SINE Alu 104 308 -5 1409 177 106 40 chr9 7169117 7169439 -135102005 + MLT1D LTR MaLR 163 505 0 2092 92 0 3 chr9 7169445 7169759 -135101685 + AluSc SINE Alu 1 313 0 586 341 70 24 chr9 7169775 7170144 -135101300 - HERVL40 LTR ERVL -2655 2875 2490 269 119 24 0 chr9 7170419 7170461 -135100983 - HERVL40 LTR ERVL -1723 3807 3765 * 485 226 49 0 chr9 7170455 7170557 -135100887 - HERVL40 LTR ERVL -1914 3616 3510 390 56 14 111 chr9 7170623 7170695 -135100749 - Alu SINE Alu 0 301 237 372 331 47 0 chr9 7170739 7170866 -135100578 - HERVL40 LTR ERVL -4314 1216 1084 1913 100 0 4 chr9 7170878 7171148 -135100296 - AluSq SINE Alu -10 303 35 1513 169 0 77 chr9 7171246 7171461 -135099983 - AluJb SINE Alu 0 312 131 2281 85 3 0 chr9 7171461 7171756 -135099688 + AluSp SINE Alu 1 296 -17 1513 169 0 77 chr9 7171756 7171878 -135099566 - AluJb SINE Alu -181 131 1 1349 181 12 116 chr9 7172252 7172386 -135099058 + AluJo SINE Alu 1 147 -155 2228 83 0 3 chr9 7172386 7172687 -135098757 + AluSg SINE Alu 1 300 -10 1928 141 0 26 chr9 7172690 7173002 -135098442 + AluSx SINE Alu 1 304 -8 1349 181 12 116 chr9 7173002 7173200 -135098244 + AluJo SINE Alu 149 302 0 1937 114 3 50 chr9 7173582 7173899 -135097545 + AluSp SINE Alu 1 302 -11 2290 76 3 7 chr9 7173919 7174222 -135097222 + AluSx SINE Alu 1 302 -10 2298 85 7 0 chr9 7174398 7174705 -135096739 + AluSq SINE Alu 1 309 -4 3819 150 49 71 chr9 7175262 7175339 -135096105 - LTR39 LTR ERV1 0 783 706 2028 127 0 0 chr9 7175339 7175638 -135095806 - AluSx SINE Alu -10 302 4 3819 150 49 71 chr9 7175638 7175658 -135095786 - LTR39 LTR ERV1 -77 706 687 1730 153 14 0 chr9 7175658 7175945 -135095499 - AluJb SINE Alu -21 291 1 3819 150 49 71 chr9 7175945 7176647 -135094797 - LTR39 LTR ERV1 -96 687 1 696 144 0 24 chr9 7176688 7176813 -135094631 - FLAM_C SINE Alu -7 126 5 216 200 0 0 chr9 7176819 7176864 -135094580 + CT-rich Low_complexity Low_complexity 4 48 0 2199 88 3 7 chr9 7176881 7177187 -135094257 - AluSp SINE Alu -8 305 1 2013 113 17 3 chr9 7178566 7178866 -135092578 - AluSx SINE Alu -8 304 1 2004 96 0 36 chr9 7178888 7179191 -135092253 - AluSx SINE Alu -20 292 1 411 303 73 12 chr9 7179662 7179827 -135091617 - MIR SINE MIR -3 259 85 222 209 47 0 chr9 7179830 7179873 -135091571 - MIR SINE MIR -151 111 67 647 131 46 39 chr9 7179885 7180015 -135091429 - FLAM_A SINE Alu -2 131 1 304 280 72 32 chr9 7180053 7180131 -135091313 + MIR SINE MIR 17 90 -118 2266 94 0 3 chr9 7180131 7180440 -135091004 - AluSq SINE Alu -5 308 1 1236 172 4 70 chr9 7180441 7180697 -135090747 - MER8 DNA MER2_type 0 239 1 304 280 72 32 chr9 7180697 7180741 -135090703 + MIR SINE MIR 89 146 -62 2091 137 0 3 chr9 7180817 7181130 -135090314 + AluSx SINE Alu 1 312 0 2201 95 3 7 chr9 7181565 7181869 -135089575 - AluSc SINE Alu -6 303 1 1861 106 71 3 chr9 7182207 7182490 -135088954 - AluSx SINE Alu -10 302 1 300 224 83 68 chr9 7182996 7183188 -135088256 - L1MC5 LINE L1 -196 7765 7571 27 0 0 0 chr9 7183188 7183215 -135088229 + AT_rich Low_complexity Low_complexity 1 27 0 1689 146 4 7 chr9 7183247 7183527 -135087917 - AluJb SINE Alu -29 283 5 389 92 70 21 chr9 7184055 7184197 -135087247 + (TTATA)n Simple_repeat Simple_repeat 1 149 0 561 126 23 0 chr9 7184341 7184428 -135087016 - AluSg SINE Alu -210 100 12 2129 106 0 13 chr9 7184477 7184779 -135086665 + AluSx SINE Alu 1 298 -14 2138 118 0 0 chr9 7184784 7185089 -135086355 + AluSx SINE Alu 1 305 -7 1990 118 3 13 chr9 7185106 7185410 -135086034 + AluSc SINE Alu 9 309 0 1237 225 3 40 chr9 7185464 7185627 -135085817 - AluJo SINE Alu -22 290 141 2175 120 0 0 chr9 7185627 7185936 -135085508 - AluSx SINE Alu -3 309 1 1237 225 3 40 chr9 7185936 7186070 -135085374 - AluJo SINE Alu -171 141 4 607 275 18 30 chr9 7186124 7186291 -135085153 - MER61D LTR ERV1 0 501 337 430 240 116 8 chr9 7186296 7186425 -135085019 - LTR28 LTR ERV1 -676 344 202 305 242 78 18 chr9 7186448 7186577 -135084867 + L1MCa LINE L1 1933 2065 -4361 1098 235 0 0 chr9 7186596 7186792 -135084652 - LTR28 LTR ERV1 -824 196 1 1889 101 69 3 chr9 7186917 7187205 -135084239 - AluSx SINE Alu -5 307 1 364 188 58 0 chr9 7187241 7187310 -135084134 - MER70A LTR ERVL 0 472 400 2177 164 9 83 chr9 7187411 7187729 -135083715 - MER70A LTR ERVL -82 390 50 2126 91 3 23 chr9 7187729 7188036 -135083408 - AluSp SINE Alu -12 301 1 2177 164 9 83 chr9 7188036 7188059 -135083385 - MER70A LTR ERVL -422 50 27 1876 146 14 0 chr9 7188059 7188346 -135083098 + AluSx SINE Alu 1 291 -21 2177 164 9 83 chr9 7188346 7188424 -135083020 - MER70A LTR ERVL -445 27 1 268 253 190 0 chr9 7188708 7188786 -135082658 - MLT1G1 LTR MaLR -206 389 297 539 160 0 20 chr9 7188786 7188886 -135082558 + MER4A LTR ERV1 1 98 -566 1606 112 37 121 chr9 7188886 7189263 -135082181 + MER4A LTR ERV1 261 664 0 1988 139 0 0 chr9 7189413 7189715 -135081729 - AluSx SINE Alu -4 308 7 2180 86 7 13 chr9 7189906 7190209 -135081235 - AluSg SINE Alu -8 302 2 1182 96 0 0 chr9 7191286 7191452 -135079992 - AluSg/x SINE Alu -15 295 130 2257 47 40 7 chr9 7192370 7192671 -135078773 - AluY SINE Alu 0 311 1 736 147 133 21 chr9 7192671 7192814 -135078630 - AluSg/x SINE Alu -13 299 141 2323 252 90 26 chr9 7192828 7193096 -135078348 + L2 LINE L2 2005 2254 -1060 2494 61 0 0 chr9 7193096 7193407 -135078037 - AluY SINE Alu 0 311 1 2323 252 90 26 chr9 7193407 7193901 -135077543 + L2 LINE L2 2254 2816 -498 649 241 120 49 chr9 7193906 7194172 -135077272 - LTR33 LTR ERVL -2 519 235 423 233 100 0 chr9 7194264 7194384 -135077060 - LTR33 LTR ERVL -388 133 2 778 263 50 93 chr9 7194384 7194597 -135076847 + L2 LINE L2 2827 3048 -265 2066 100 0 62 chr9 7194597 7194918 -135076526 + AluSx SINE Alu 1 301 -11 778 263 50 93 chr9 7194918 7195168 -135076276 + L2 LINE L2 3048 3270 -43 208 200 213 12 chr9 7195202 7195282 -135076162 - MIR SINE MIR -45 217 122 1678 152 47 7 chr9 7195327 7195624 -135075820 - AluJb SINE Alu -3 309 1 2192 102 16 0 chr9 7195671 7195974 -135075470 - AluSx SINE Alu -4 308 1 1065 111 0 0 chr9 7196021 7196174 -135075270 + AluSp/q SINE Alu 161 313 0 321 155 12 36 chr9 7196188 7196272 -135075172 - Zaphod DNA AcHobo -3041 990 909 241 180 0 20 chr9 7196343 7196393 -135075051 + LTR59 LTR ERV1 471 519 -78 21 57 0 0 chr9 7196397 7196432 -135075012 + AT_rich Low_complexity Low_complexity 1 35 0 2152 96 3 3 chr9 7196441 7196734 -135074710 - AluSq SINE Alu -20 293 1 389 176 73 94 chr9 7196737 7196817 -135074627 - Zaphod DNA AcHobo -3141 890 810 881 159 38 6 chr9 7196817 7196974 -135074470 + FRAM SINE Alu 1 162 -4 389 176 73 94 chr9 7196974 7197060 -135074384 - Zaphod DNA AcHobo -3221 810 728 2068 108 10 0 chr9 7197060 7197355 -135074089 - AluSx SINE Alu -14 298 1 389 176 73 94 chr9 7197355 7197420 -135074024 - Zaphod DNA AcHobo -3303 728 663 1321 53 0 6 chr9 7197441 7197612 -135073832 - AluY SINE Alu -6 305 136 2191 99 3 3 chr9 7197667 7197969 -135073475 - AluSx SINE Alu -10 302 1 1125 268 135 39 chr9 7197969 7198177 -135073267 - Zaphod DNA AcHobo -3392 639 453 2265 92 0 3 chr9 7198177 7198481 -135072963 - AluSg SINE Alu -7 303 1 1125 268 135 39 chr9 7198481 7198686 -135072758 - Zaphod DNA AcHobo -3578 453 186 1641 138 145 59 chr9 7198689 7198822 -135072622 + LTR54B LTR ERV1 1 121 -377 2210 108 7 0 chr9 7198822 7199129 -135072315 + AluSc SINE Alu 1 309 0 1641 138 145 59 chr9 7199129 7199237 -135072207 + LTR54B LTR ERV1 121 218 -280 1953 107 10 24 chr9 7199237 7199535 -135071909 + AluSx SINE Alu 1 294 -18 1641 138 145 59 chr9 7199535 7199747 -135071697 + LTR54B LTR ERV1 218 494 -4 706 168 61 26 chr9 7200420 7200636 -135070808 - MLT1A1 LTR MaLR 0 365 207 983 149 11 17 chr9 7200677 7200852 -135070592 + MER4A LTR ERV1 1 174 -490 2562 39 0 0 chr9 7200873 7201178 -135070266 + AluY SINE Alu 1 305 -6 878 164 18 12 chr9 7201279 7201450 -135069994 + AluJo SINE Alu 126 297 -15 208 222 42 69 chr9 7201526 7201598 -135069846 + MIR SINE MIR 193 262 0 2143 48 44 0 chr9 7202560 7202857 -135068587 - AluY SINE Alu 0 309 1 823 195 84 97 chr9 7204087 7204395 -135067049 + MER2 DNA MER2_type 42 345 0 305 340 113 5 chr9 7204437 7204640 -135066804 - MIR SINE MIR -18 244 20 314 89 0 0 chr9 7204853 7204898 -135066546 - MADE1 DNA Mariner -4 76 32 2071 89 14 0 chr9 7204898 7205189 -135066255 + AluSx SINE Alu 1 295 -17 1208 128 0 0 chr9 7205191 7205371 -135066073 + AluSq SINE Alu 134 313 0 951 199 0 0 chr9 7205497 7205663 -135065781 - AluJb SINE Alu -13 299 134 1883 106 65 0 chr9 7205663 7205938 -135065506 - AluSx SINE Alu -19 293 1 235 284 43 9 chr9 7205944 7206060 -135065384 - L1ME LINE L1 -338 5783 5664 621 118 0 0 chr9 7206204 7206289 -135065155 + AluY SINE Alu 207 291 -20 1410 165 120 39 chr9 7206458 7206631 -135064813 - MSTD LTR MaLR -2 394 236 2008 121 7 3 chr9 7206631 7206928 -135064516 - AluSx SINE Alu -14 298 1 1410 165 120 39 chr9 7206928 7207063 -135064381 - MSTD LTR MaLR -160 236 61 418 269 45 87 chr9 7207178 7207427 -135064017 + MIR SINE MIR 23 260 -2 2099 96 0 53 chr9 7207973 7208295 -135063149 - AluSg SINE Alu -5 305 1 1626 176 0 20 chr9 7208298 7208599 -135062845 - AluJo SINE Alu -17 295 1 192 395 45 13 chr9 7208599 7208756 -135062688 + L2 LINE L2 2517 2678 -636 2162 111 3 0 chr9 7208788 7209095 -135062349 + AluSp SINE Alu 1 308 -5 2194 100 0 10 chr9 7209584 7209884 -135061560 - AluSg SINE Alu -13 297 1 2182 112 0 6 chr9 7209970 7210283 -135061161 - AluSx SINE Alu -1 311 1 373 327 79 16 chr9 7210283 7210573 -135060871 + L2 LINE L2 2772 3081 -191 629 212 80 7 chr9 7210646 7210797 -135060647 + AluJb SINE Alu 134 295 -17 1474 115 0 0 chr9 7211338 7211547 -135059897 + AluSg/x SINE Alu 92 300 -10 1906 155 0 0 chr9 7211699 7212008 -135059436 + AluSx SINE Alu 1 309 -3 416 291 147 103 chr9 7212013 7212420 -135059024 + L1MEd LINE L1 66 513 -5606 1992 103 26 0 chr9 7212420 7212743 -135058701 + AluSg SINE Alu 1 330 0 416 291 147 103 chr9 7212743 7212966 -135058478 + L1MEd LINE L1 513 725 -5394 1136 189 12 87 chr9 7212975 7213123 -135058321 + AluJb SINE Alu 5 116 -196 2125 94 3 26 chr9 7213123 7213431 -135058013 + AluSq SINE Alu 1 301 -12 1136 189 12 87 chr9 7213431 7213615 -135057829 + AluJb SINE Alu 116 312 0 376 192 50 20 chr9 7213686 7213785 -135057659 + L1MC5 LINE L1 7336 7437 -524 604 274 63 83 chr9 7213806 7214038 -135057406 - L1 LINE L1 -2084 4062 3827 1516 79 26 40 chr9 7214038 7214265 -135057179 + AluSx SINE Alu 1 224 -88 604 274 63 83 chr9 7214265 7214694 -135056750 - L1 LINE L1 -2319 3827 3442 1837 129 33 0 chr9 7215759 7216061 -135055383 - AluJb SINE Alu 0 312 1 648 105 0 11 chr9 7216186 7216281 -135055163 + FLAM_C SINE Alu 34 127 -16 2099 110 7 0 chr9 7216289 7216599 -135054845 + AluSp SINE Alu 1 312 -1 2489 47 0 0 chr9 7216828 7217126 -135054318 - AluY SINE Alu -13 298 1 202 303 210 12 chr9 7217186 7217348 -135054096 + MIR SINE MIR 48 241 -21 1504 204 92 36 chr9 7217432 7217851 -135053593 + MER39 LTR ERV1 269 565 0 2255 100 0 0 chr9 7217915 7218224 -135053220 - AluSx SINE Alu -3 309 1 2141 103 3 10 chr9 7218256 7218567 -135052877 + AluSx SINE Alu 3 311 -1 195 42 0 0 chr9 7218812 7218836 -135052608 + (TTTG)n Simple_repeat Simple_repeat 2 25 0 1992 128 3 3 chr9 7218990 7219287 -135052157 - AluSp SINE Alu -16 297 1 2121 114 0 10 chr9 7219287 7219595 -135051849 - AluSx SINE Alu -7 305 1 1959 97 0 0 chr9 7219601 7219915 -135051529 - AluSc SINE Alu 0 336 23 1669 176 0 0 chr9 7219923 7220236 -135051208 - AluJb SINE Alu 0 313 1 2161 84 3 0 chr9 7220768 7221087 -135050357 - AluSx SINE Alu 0 320 1 1319 209 17 24 chr9 7221095 7221391 -135050053 - AluJo SINE Alu -18 294 1 966 201 14 5 chr9 7221399 7221608 -135049836 - AluJb SINE Alu 0 312 102 565 147 147 0 chr9 7221608 7221710 -135049734 + FLAM_C SINE Alu 1 117 -26 1882 154 0 3 chr9 7221723 7222034 -135049410 - AluJb SINE Alu -2 310 1 2188 92 3 7 chr9 7222101 7222406 -135049038 + AluSx SINE Alu 1 304 -8 1542 170 44 27 chr9 7222696 7223059 -135048385 - L1MA7 LINE L1 -100 6200 5825 974 166 0 12 chr9 7223066 7223229 -135048215 - AluJb SINE Alu -18 294 134 2146 105 0 0 chr9 7223229 7223523 -135047921 - AluSc SINE Alu -15 294 1 2060 124 0 3 chr9 7223528 7223826 -135047618 - AluSx SINE Alu -15 297 1 294 202 11 79 chr9 7224074 7224163 -135047281 - MER34B LTR ERV1 -448 117 35 259 161 18 18 chr9 7224326 7224382 -135047062 - AluSp SINE Alu -133 170 115 21 0 0 0 chr9 7224550 7224571 -135046873 + AT_rich Low_complexity Low_complexity 1 21 0 1890 155 0 0 chr9 7224571 7224867 -135046577 + AluSx SINE Alu 1 296 -16 1510 157 20 38 chr9 7224880 7225045 -135046399 - AluJo SINE Alu -14 298 139 2211 113 3 0 chr9 7225045 7225356 -135046088 - AluSx SINE Alu 0 312 1 1510 157 20 38 chr9 7225356 7225483 -135045961 - AluJo SINE Alu -173 139 11 754 133 18 0 chr9 7225610 7225723 -135045721 + AluSq/x SINE Alu 2 116 -196 1479 96 58 139 chr9 7225727 7225748 -135045696 - MER4C-int LTR ERV1 -4278 1268 1247 2199 114 0 0 chr9 7225748 7226055 -135045389 + AluSq SINE Alu 1 307 -6 1479 96 58 139 chr9 7226055 7226293 -135045151 - MER4C-int LTR ERV1 -4299 1247 991 2042 111 14 0 chr9 7226293 7226590 -135044854 - AluSg SINE Alu -9 301 1 1479 96 58 139 chr9 7226590 7226649 -135044795 - MER4C-int LTR ERV1 -4555 991 511 235 178 0 44 chr9 7226669 7226714 -135044730 - LTR49 LTR ERV1 -282 313 271 309 143 0 0 chr9 7226781 7226830 -135044614 - MER4C-int LTR ERV1 -5799 799 751 713 229 227 24 chr9 7226841 7227288 -135044156 - MER4C-int LTR ERV1 -6009 589 1 489 144 264 8 chr9 7227309 7227434 -135044010 - MER4C LTR ERV1 -18 447 291 358 195 98 89 chr9 7227489 7227612 -135043832 - MER4A LTR ERV1 -322 342 219 1800 86 89 51 chr9 7227612 7227904 -135043540 + AluSq SINE Alu 1 303 -10 412 16 16 0 chr9 7227926 7227987 -135043457 - AluY SINE Alu -1 310 249 252 0 0 0 chr9 7228090 7228118 -135043326 + (A)n Simple_repeat Simple_repeat 1 28 0 1954 121 28 0 chr9 7228170 7228459 -135042985 - AluSq SINE Alu -16 297 1 865 195 51 96 chr9 7229139 7229194 -135042250 - MSTD LTR MaLR 0 396 340 862 133 0 22 chr9 7229194 7229329 -135042115 - FLAM_C SINE Alu 0 133 2 865 195 51 96 chr9 7229329 7229546 -135041898 - MSTD LTR MaLR -56 340 87 2362 77 0 7 chr9 7229622 7229932 -135041512 - AluY SINE Alu -3 308 1 2110 132 0 0 chr9 7229958 7230269 -135041175 - AluSq SINE Alu -2 311 1 1820 145 7 7 chr9 7230350 7230660 -135040784 + AluJb SINE Alu 1 310 -2 1672 147 6 58 chr9 7230712 7230846 -135040598 + AluSx SINE Alu 1 140 -172 2165 102 0 0 chr9 7230846 7231140 -135040304 + AluY SINE Alu 1 294 -17 1672 147 6 58 chr9 7231140 7231332 -135040112 + AluSx SINE Alu 140 310 -2 591 236 52 17 chr9 7231895 7232069 -135039375 + MIR SINE MIR 77 256 -6 2216 73 0 0 chr9 7232191 7232479 -135038965 + AluSx SINE Alu 1 288 -24 1740 122 44 0 chr9 7235427 7235752 -135035692 + AluSx SINE Alu 1 337 0 2137 158 47 27 chr9 7235753 7236202 -135035242 - L1MB8 LINE L1 -72 6106 5649 180 0 0 0 chr9 7236202 7236222 -135035222 + (TA)n Simple_repeat Simple_repeat 1 20 0 2237 73 0 7 chr9 7236299 7236628 -135034816 - AluY SINE Alu 0 327 1 2008 98 13 36 chr9 7236759 7237065 -135034379 - AluSx SINE Alu -13 299 1 1201 209 60 11 chr9 7237093 7237376 -135034068 - AluJo SINE Alu -15 297 1 1984 73 52 11 chr9 7237568 7237854 -135033590 - AluSg SINE Alu -12 298 1 1752 64 0 0 chr9 7237855 7238074 -135033370 - L1PA6 LINE L1 0 6154 5936 773 171 39 0 chr9 7238098 7238227 -135033217 - AluJo SINE Alu -177 135 2 205 195 52 0 chr9 7238332 7238409 -135033035 + (TTATA)n Simple_repeat Simple_repeat 3 83 0 2143 104 3 7 chr9 7238419 7238716 -135032728 - AluSq SINE Alu -17 296 1 238 234 90 112 chr9 7238975 7239163 -135032281 + L2 LINE L2 2868 3051 -221 388 233 70 39 chr9 7239284 7239413 -135032031 + L1ME4a LINE L1 5987 6119 -2 2144 91 3 7 chr9 7239518 7239815 -135031629 - AluSp SINE Alu -17 296 1 300 200 67 40 chr9 7240254 7240329 -135031115 - L2 LINE L2 -33 3280 3204 202 299 81 58 chr9 7240541 7240849 -135030595 + L2 LINE L2 2290 2604 -710 359 294 99 60 chr9 7241030 7241394 -135030050 + L2 LINE L2 2934 3311 -2 394 161 23 23 chr9 7241429 7241516 -135029928 + MER112 DNA MER1_type 23 109 -151 2018 121 0 16 chr9 7241539 7241844 -135029600 - AluSx SINE Alu -11 301 2 23 33 0 0 chr9 7241848 7241878 -135029566 + AT_rich Low_complexity Low_complexity 1 30 0 640 150 154 91 chr9 7241882 7242102 -135029342 - MER46A DNA MER2_type -1 235 2 2237 86 0 10 chr9 7242883 7243197 -135028247 - AluY SINE Alu 0 311 1 1727 121 6 82 chr9 7243200 7243515 -135027929 - AluSx SINE Alu -21 291 1 22 35 0 0 chr9 7243656 7243685 -135027759 + AT_rich Low_complexity Low_complexity 1 29 0 716 221 117 29 chr9 7244202 7244442 -135027002 - L1MC4 LINE L1 -180 7862 7602 2279 100 3 0 chr9 7244520 7244829 -135026615 - AluSq SINE Alu -3 310 1 198 167 0 0 chr9 7245086 7245122 -135026322 + T-rich Low_complexity Low_complexity 2 37 0 373 272 41 47 chr9 7245170 7245375 -135026069 + MIR SINE MIR 30 237 -25 1987 136 7 0 chr9 7245656 7245966 -135025478 + AluSq SINE Alu 2 313 0 2353 88 0 0 chr9 7246524 7246830 -135024614 - AluSg SINE Alu -4 306 1 918 125 0 22 chr9 7246851 7246987 -135024457 - FLAM_C SINE Alu 0 133 1 2055 122 3 0 chr9 7247063 7247367 -135024077 - AluSx SINE Alu -7 305 1 1658 74 5 0 chr9 7247908 7248123 -135023321 - AluSg/x SINE Alu -14 298 83 2206 89 3 0 chr9 7248124 7248416 -135023028 - AluSp SINE Alu -19 294 2 2134 107 0 16 chr9 7248435 7248752 -135022692 - AluSx SINE Alu 0 312 1 1695 150 7 20 chr9 7248752 7249051 -135022393 - AluJo SINE Alu -5 307 12 2071 128 3 0 chr9 7249246 7249543 -135021901 + AluSx SINE Alu 1 298 -14 226 48 0 48 chr9 7249661 7249703 -135021741 + (TTTA)n Simple_repeat Simple_repeat 2 41 0 1677 118 0 0 chr9 7249715 7249944 -135021500 - AluSx SINE Alu -83 229 1 1815 145 32 0 chr9 7250140 7250422 -135021022 + AluSx SINE Alu 2 292 -20 612 252 30 70 chr9 7250738 7250769 -135020675 - L1ME3A LINE L1 -294 5872 5841 1914 139 0 20 chr9 7250769 7251071 -135020373 - AluSx SINE Alu -14 298 3 612 252 30 70 chr9 7251071 7251269 -135020175 - L1ME3A LINE L1 -325 5841 5652 2130 93 7 0 chr9 7251287 7251576 -135019868 - AluSq SINE Alu -21 292 2 658 212 179 5 chr9 7251583 7251767 -135019677 - MER20 DNA MER1_type -3 216 1 778 199 0 57 chr9 7251839 7252015 -135019429 - FRAM SINE Alu -11 165 1 1777 96 88 7 chr9 7252024 7252296 -135019148 - AluSc SINE Alu -15 294 1 1976 99 20 10 chr9 7252355 7252658 -135018786 - AluSq SINE Alu -7 306 1 591 98 0 0 chr9 7253396 7253478 -135017966 - AluSg/x SINE Alu -20 289 208 903 148 24 30 chr9 7253673 7253842 -135017602 - AluJo/FRAM SINE Alu -11 301 134 2148 110 0 0 chr9 7253842 7254141 -135017303 - AluSx SINE Alu -8 304 6 2024 109 0 3 chr9 7254241 7254525 -135016919 + AluSx SINE Alu 1 283 -29 296 69 52 52 chr9 7254573 7254631 -135016813 - Alu SINE Alu 0 300 243 1008 111 0 7 chr9 7254635 7254779 -135016665 - AluSq/x SINE Alu -170 143 1 2185 64 42 0 chr9 7254790 7255073 -135016371 - AluY SINE Alu -16 295 1 227 242 91 0 chr9 7255452 7255518 -135015926 + LTR67 LTR ERVL 485 556 -1 1937 136 3 7 chr9 7256242 7256552 -135014892 + AluSq SINE Alu 1 309 -4 3157 186 18 46 chr9 7256975 7257578 -135013866 + MER82 DNA MER2_type 2 586 -67 1992 106 7 16 chr9 7257578 7257881 -135013563 - AluSq SINE Alu -13 300 1 3157 186 18 46 chr9 7257881 7257945 -135013499 + MER82 DNA MER2_type 586 650 -3 451 256 147 24 chr9 7258096 7258307 -135013137 + MIR SINE MIR 6 242 -20 584 232 64 64 chr9 7259855 7260058 -135011386 - MIR SINE MIR -26 236 30 1248 138 0 15 chr9 7260094 7260289 -135011155 - AluSx SINE Alu -120 192 1 1956 202 23 32 chr9 7260808 7261099 -135010345 - MLT1C LTR MaLR 0 467 180 2179 92 0 7 chr9 7261099 7261394 -135010050 - AluSg SINE Alu -17 293 1 1956 202 23 32 chr9 7261394 7261573 -135009871 - MLT1C LTR MaLR -287 180 1 256 263 140 22 chr9 7262542 7262680 -135008764 + L1ME LINE L1 5320 5474 -647 184 268 244 0 chr9 7262895 7262977 -135008467 + MIR SINE MIR 29 130 -78 2015 122 0 3 chr9 7262987 7263291 -135008153 - AluSx SINE Alu -9 303 1 704 256 142 89 chr9 7263296 7263984 -135007460 + L2 LINE L2 2422 3145 -168 208 351 117 35 chr9 7264367 7264794 -135006650 - L2 LINE L2 -1 3271 2810 1673 127 3 71 chr9 7264798 7264976 -135006468 - AluJb SINE Alu -9 303 155 2313 83 3 0 chr9 7264976 7265277 -135006167 - AluSp SINE Alu -11 302 1 1673 127 3 71 chr9 7265277 7265421 -135006023 - AluJb SINE Alu -157 155 3 1036 147 0 6 chr9 7265824 7265994 -135005450 + AluJb SINE Alu 3 171 -141 1708 77 88 49 chr9 7266160 7266445 -135004999 - AluY SINE Alu -2 309 14 261 83 0 0 chr9 7266559 7266595 -135004849 + (A)n Simple_repeat Simple_repeat 1 36 0 272 174 0 0 chr9 7266724 7266770 -135004674 + L2 LINE L2 3264 3309 -4 212 359 76 40 chr9 7266819 7267042 -135004402 + L2 LINE L2 2851 3081 -191 1768 149 26 4 chr9 7267042 7267310 -135004134 - AluSx SINE Alu -38 274 1 2175 128 3 0 chr9 7267645 7267951 -135003493 + AluSp SINE Alu 1 307 -6 2072 107 7 10 chr9 7267964 7268255 -135003189 + AluSx SINE Alu 3 292 -20 194 0 39 0 chr9 7268256 7268282 -135003162 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 278 139 0 0 chr9 7268424 7268467 -135002977 - AluSg SINE Alu -6 295 253 2136 112 0 0 chr9 7268467 7268743 -135002701 - AluSg SINE Alu -34 276 1 2419 85 0 9 chr9 7269583 7269899 -135001545 - AluSq SINE Alu 0 313 1 979 178 15 54 chr9 7269904 7270163 -135001281 - L1MB7 LINE L1 0 6184 5936 527 194 32 48 chr9 7270176 7270300 -135001144 - L2 LINE L2 -2 3311 3190 244 363 104 0 chr9 7270327 7270462 -135000982 - L2 LINE L2 -284 3029 2881 283 286 109 51 chr9 7270585 7270760 -135000684 - L2 LINE L2 -607 2707 2523 2206 122 0 3 chr9 7271383 7271686 -134999758 - AluSx SINE Alu -8 304 3 1900 174 0 0 chr9 7271724 7272028 -134999416 - AluJb SINE Alu -8 304 1 1632 95 14 0 chr9 7272220 7272442 -134999002 + AluSq SINE Alu 1 225 -88 1519 119 78 71 chr9 7273048 7273343 -134998101 - AluJb SINE Alu -15 297 1 10869 55 29 16 chr9 7274309 7275674 -134995770 - SVA Other Other -2 1384 2 228 67 0 0 chr9 7275687 7275717 -134995727 + (T)n Simple_repeat Simple_repeat 1 30 0 1703 157 13 43 chr9 7275997 7276142 -134995302 + AluJo SINE Alu 1 134 -178 2101 138 10 0 chr9 7276142 7276446 -134994998 + AluSx SINE Alu 1 307 -5 1703 157 13 43 chr9 7276446 7276600 -134994844 + AluJo SINE Alu 134 291 -21 1979 137 0 16 chr9 7276667 7276982 -134994462 - AluJb SINE Alu 0 312 3 210 257 57 0 chr9 7277109 7277179 -134994265 + MIR SINE MIR 62 135 -127 260 231 51 0 chr9 7277217 7277295 -134994149 + L1ME3A LINE L1 5003 5084 -1062 2242 64 68 14 chr9 7277298 7277593 -134993851 - AluY SINE Alu 0 311 1 345 24 0 0 chr9 7277675 7277717 -134993727 + (TC)n Simple_repeat Simple_repeat 2 43 0 1663 255 31 103 chr9 7277773 7277879 -134993565 + L1ME3A LINE L1 5263 5375 -795 2324 91 3 3 chr9 7277879 7278177 -134993267 + AluSq SINE Alu 1 298 -15 1663 255 31 103 chr9 7278177 7278673 -134992771 + L1ME3A LINE L1 5375 5770 -400 1735 145 80 0 chr9 7278673 7278963 -134992481 - AluSx SINE Alu 0 311 1 1663 255 31 103 chr9 7278963 7279337 -134992107 + L1ME3A LINE L1 5770 6170 0 2141 94 3 41 chr9 7279347 7279667 -134991777 + AluSc SINE Alu 1 308 -1 790 163 31 0 chr9 7279686 7279815 -134991629 + FLAM_C SINE Alu 1 133 0 1846 156 28 3 chr9 7279891 7280179 -134991265 - AluSx SINE Alu -17 295 1 814 284 10 0 chr9 7280281 7280489 -134990955 - MER63A DNA MER1_type 0 210 1 2260 98 3 3 chr9 7280534 7280831 -134990613 + AluSg SINE Alu 1 297 -13 2283 98 0 0 chr9 7280959 7281255 -134990189 - AluSg SINE Alu -14 296 1 306 262 219 16 chr9 7281297 7281480 -134989964 + MIR SINE MIR 34 253 -9 1868 180 158 68 chr9 7282227 7282269 -134989175 - MLT1F1 LTR MaLR 0 567 530 2268 101 3 0 chr9 7282269 7282593 -134988851 + AluSp SINE Alu 1 325 0 1868 180 158 68 chr9 7282593 7282916 -134988528 - MLT1F1 LTR MaLR -37 530 237 504 45 0 0 chr9 7282916 7282983 -134988461 + (TCTCCC)n Simple_repeat Simple_repeat 1 67 0 8756 24 9 264 chr9 7282983 7284767 -134986677 + SVA Other Other 57 1386 0 1868 180 158 68 chr9 7284767 7284909 -134986535 - MLT1F1 LTR MaLR -329 238 11 1789 166 31 0 chr9 7285773 7286063 -134985381 + AluJb SINE Alu 1 299 -13 228 299 130 0 chr9 7286351 7286428 -134985016 + L2 LINE L2 3186 3272 0 1810 153 7 7 chr9 7286647 7286956 -134984488 + AluJb SINE Alu 2 310 0 2012 83 8 8 chr9 7287217 7287481 -134983963 - AluSg SINE Alu -19 291 28 400 345 81 5 chr9 7287672 7287895 -134983549 - MIR SINE MIR -15 247 8 1111 90 28 0 chr9 7288160 7288305 -134983139 + AluSg/x SINE Alu 150 298 -14 1989 126 77 0 chr9 7288462 7288772 -134982672 - MER1B DNA MER1_type 0 337 4 2217 89 13 16 chr9 7288950 7289264 -134982180 + AluSp SINE Alu 1 313 0 507 176 96 64 chr9 7289264 7289381 -134982063 - FLAM_C SINE Alu -174 128 5 273 286 70 29 chr9 7290017 7290188 -134981256 - L1ME LINE L1 -406 5715 5538 25 0 0 0 chr9 7291242 7291267 -134980177 + AT_rich Low_complexity Low_complexity 1 25 0 22 70 0 0 chr9 7291407 7291450 -134979994 + AT_rich Low_complexity Low_complexity 1 43 0 695 170 0 0 chr9 7291458 7291570 -134979874 - FLAM_C SINE Alu -30 113 2 327 281 38 72 chr9 7291576 7291661 -134979783 - L1MC4 LINE L1 -1 8041 7955 869 165 83 61 chr9 7291661 7291891 -134979553 + MER46A DNA MER2_type 1 235 -1 327 281 38 72 chr9 7291891 7292040 -134979404 - L1MC4 LINE L1 -87 7955 7815 247 119 203 0 chr9 7292045 7292104 -134979340 - L1MC4 LINE L1 -273 7769 7699 326 228 22 73 chr9 7292146 7292282 -134979162 - L1MC4 LINE L1 -725 7317 7189 710 200 35 102 chr9 7292287 7292618 -134978826 - L1ME3A LINE L1 -1 6169 5865 562 209 160 12 chr9 7292646 7292887 -134978557 - L1ME3A LINE L1 -556 5606 5328 231 276 105 6 chr9 7293061 7293242 -134978202 + L1MC5 LINE L1 7628 7826 -135 1881 155 7 10 chr9 7293265 7293561 -134977883 - AluJo SINE Alu -17 295 1 350 284 22 33 chr9 7293715 7293820 -134977624 - L1ME4a LINE L1 -9 6112 6008 2266 110 0 0 chr9 7293820 7294121 -134977323 - AluSg SINE Alu -9 301 1 350 284 22 33 chr9 7294121 7294198 -134977246 - L1ME4a LINE L1 -113 6008 5932 192 185 19 37 chr9 7294784 7294838 -134976606 - MIR SINE MIR -67 141 89 7430 51 2 0 chr9 7296779 7297678 -134973766 - L1PA6 LINE L1 0 6154 5254 1871 134 42 0 chr9 7297707 7297991 -134973453 - AluSx SINE Alu -16 296 1 575 256 94 6 chr9 7298193 7298373 -134973071 + MER58A DNA MER1_type 28 223 -1 1333 155 52 174 chr9 7300541 7300918 -134970526 - Charlie1b DNA MER1_type -2238 523 238 2261 111 0 7 chr9 7300918 7301225 -134970219 + AluSq SINE Alu 1 305 -8 1333 155 52 174 chr9 7301225 7301437 -134970007 - Charlie1b DNA MER1_type -2523 238 2 1804 186 0 3 chr9 7301856 7302168 -134969276 - AluJb SINE Alu -1 311 1 378 307 108 25 chr9 7302382 7302623 -134968821 - L1ME4a LINE L1 -43 6078 5818 2318 103 0 3 chr9 7302640 7302942 -134968502 + AluSx SINE Alu 1 301 -11 240 326 93 8 chr9 7303248 7303377 -134968067 + MIR3 SINE MIR 67 206 -2 231 299 186 26 chr9 7303865 7304096 -134967348 + L3 LINE CR1 891 1158 -419 2442 74 0 0 chr9 7304207 7304503 -134966941 - AluY SINE Alu -15 296 1 206 339 43 38 chr9 7304509 7304645 -134966799 + L3 LINE CR1 1372 1511 -66 2278 98 3 3 chr9 7304645 7304941 -134966503 + AluSp SINE Alu 1 296 -17 206 339 43 38 chr9 7304941 7304990 -134966454 + L3 LINE CR1 1511 1558 -19 351 279 98 27 chr9 7305536 7305719 -134965725 - MIR3 SINE MIR -4 204 9 728 286 51 83 chr9 7307227 7307417 -134964027 - MLT1J LTR MaLR 0 511 316 1881 117 92 0 chr9 7307417 7307698 -134963746 - AluSx SINE Alu -5 307 1 728 286 51 83 chr9 7307698 7308035 -134963409 - MLT1J LTR MaLR -195 316 1 2426 54 3 10 chr9 7308114 7308410 -134963034 + AluY SINE Alu 1 294 -17 2673 61 0 0 chr9 7308590 7308901 -134962543 - AluY SINE Alu 0 311 1 2136 116 0 35 chr9 7308901 7309212 -134962232 - AluSq SINE Alu -13 300 1 434 309 57 10 chr9 7309700 7309894 -134961550 + MIR SINE MIR 54 256 -6 1847 158 20 3 chr9 7310220 7310512 -134960932 - AluSx SINE Alu -15 297 1 262 0 53 0 chr9 7311839 7311877 -134959567 + (TTTTTG)n Simple_repeat Simple_repeat 3 42 0 628 106 0 4 chr9 7312348 7312567 -134958877 + AluSx SINE Alu 3 299 -11 777 299 59 21 chr9 7312814 7313235 -134958209 - L1ME3A LINE L1 -204 5949 5513 1705 197 3 0 chr9 7313239 7313533 -134957911 - AluJo SINE Alu -17 295 1 526 200 159 3 chr9 7313549 7313699 -134957745 - L1MB7 LINE L1 -9 6155 5992 344 219 136 67 chr9 7313698 7314050 -134957394 - L1ME3A LINE L1 -686 5475 5102 * 279 245 50 80 chr9 7314099 7314299 -134957145 - L1ME3A LINE L1 -5016 1103 910 22 35 0 0 chr9 7365332 7365361 -134906083 + AT_rich Low_complexity Low_complexity 1 29 0 579 295 101 4 chr9 7367064 7367322 -134904122 + LTR16A LTR ERVL 168 450 0 1702 203 42 3 chr9 7368001 7368331 -134903113 - MER2 DNA MER2_type 0 344 2 245 337 41 51 chr9 7368970 7369068 -134902376 + L2 LINE L2 3157 3253 -19 493 138 0 58 chr9 7369365 7369452 -134901992 + L1M3f LINE L1 6 87 -5241 2210 98 3 10 chr9 7369453 7369749 -134901695 + AluSc SINE Alu 1 294 -15 384 240 0 0 chr9 7369749 7369870 -134901574 + (TA)n Simple_repeat Simple_repeat 2 122 0 3820 174 42 52 chr9 7369870 7370586 -134900858 + L1M3f LINE L1 77 784 -4544 1989 127 6 41 chr9 7370586 7370726 -134900718 + AluSx SINE Alu 5 148 -164 2278 49 39 29 chr9 7370726 7371034 -134900410 + AluY SINE Alu 1 311 0 1989 127 6 41 chr9 7371034 7371208 -134900236 + AluSx SINE Alu 148 308 -4 3820 174 42 52 chr9 7371208 7371369 -134900075 + L1M3f LINE L1 784 945 -4383 2931 90 7 7 chr9 7371846 7372291 -134899153 - L1P LINE L1 -3470 2676 2232 806 158 0 7 chr9 7372291 7372430 -134899014 - Tigger1 DNA MER2_type -1217 1201 1064 1149 112 0 0 chr9 7372430 7372582 -134898862 - AluSp SINE Alu -14 299 148 1514 112 5 27 chr9 7372582 7372805 -134898639 - AluSx SINE Alu -94 218 1 2852 135 100 27 chr9 7372805 7373406 -134898038 - Tigger1 DNA MER2_type -1346 1072 428 522 43 0 0 chr9 7373406 7373475 -134897969 + (GA)n Simple_repeat Simple_repeat 1 69 0 1517 187 59 0 chr9 7373475 7373796 -134897648 - Tigger1 DNA MER2_type -2076 342 3 830 112 0 70 chr9 7374306 7374449 -134896995 + FLAM_C SINE Alu 1 133 0 271 57 0 0 chr9 7375741 7375776 -134895668 - U2 snRNA snRNA -153 35 1 2313 87 0 0 chr9 7376713 7377002 -134894442 - AluY SINE Alu -22 289 1 187 182 0 0 chr9 7377004 7377037 -134894407 + MIR3 SINE MIR 154 186 -22 22 0 0 0 chr9 7378997 7379019 -134892425 + AT_rich Low_complexity Low_complexity 1 22 0 188 206 123 41 chr9 7379151 7379224 -134892220 + MIR SINE MIR 75 153 -55 21 0 0 0 chr9 7379827 7379848 -134891596 + AT_rich Low_complexity Low_complexity 1 21 0 336 48 0 0 chr9 7382212 7382254 -134889190 + (TG)n Simple_repeat Simple_repeat 1 42 0 207 240 0 20 chr9 7384070 7384120 -134887324 + CT-rich Low_complexity Low_complexity 4 52 0 1125 184 45 58 chr9 7384445 7384755 -134886689 - L1ME1 LINE L1 -4 6162 5857 1733 157 35 3 chr9 7385762 7385922 -134885522 - AluSx SINE Alu -16 296 122 2223 117 10 7 chr9 7385922 7386231 -134885213 - AluSg SINE Alu 0 310 1 1733 157 35 3 chr9 7386231 7386357 -134885087 - AluSx SINE Alu -190 122 1 2768 7 0 3 chr9 7388221 7388527 -134882917 - AluYa5 SINE Alu -6 305 1 360 0 0 0 chr9 7388651 7388691 -134882753 + (TG)n Simple_repeat Simple_repeat 1 40 0 462 277 35 7 chr9 7389761 7389902 -134881542 + MIR SINE MIR 98 242 -20 2102 188 25 11 chr9 7390734 7391212 -134880232 + L1MB7 LINE L1 5691 6175 -9 21 0 0 0 chr9 7391345 7391366 -134880078 + AT_rich Low_complexity Low_complexity 1 21 0 422 195 0 0 chr9 7391408 7391495 -134879949 + L1ME2 LINE L1 6068 6154 -10 22 35 0 0 chr9 7393731 7393760 -134877684 + AT_rich Low_complexity Low_complexity 1 29 0 905 252 96 15 chr9 7394661 7394994 -134876450 - MLT1E2 LTR MaLR 0 626 267 331 225 0 25 chr9 7394992 7395072 -134876372 - MLT1E2 LTR MaLR -407 98 21 * 759 161 22 29 chr9 7395146 7395283 -134876161 + AluJ SINE Alu 1 136 -176 32 0 0 0 chr9 7395996 7396028 -134875416 + AT_rich Low_complexity Low_complexity 1 32 0 21 0 0 0 chr9 7396093 7396114 -134875330 + AT_rich Low_complexity Low_complexity 1 21 0 981 189 0 0 chr9 7398691 7398876 -134872568 - L1MC1 LINE L1 -12 6321 6137 781 139 0 15 chr9 7398920 7399057 -134872387 - L1MC1 LINE L1 -184 6149 6015 252 0 0 0 chr9 7399070 7399098 -134872346 + (TG)n Simple_repeat Simple_repeat 2 29 0 879 184 6 12 chr9 7400012 7400175 -134871269 + AluJ SINE Alu 136 297 -15 212 305 95 38 chr9 7401313 7401418 -134870026 - L2 LINE L2 -13 3259 3149 285 332 51 16 chr9 7401426 7401566 -134869878 + MER5B DNA MER1_type 38 175 -3 265 277 70 7 chr9 7401969 7402095 -134869349 + MIR SINE MIR 48 151 -57 472 321 132 35 chr9 7402869 7403209 -134868235 + L1MC/D LINE L1 5431 5803 -318 2134 134 3 0 chr9 7403484 7403783 -134867661 + AluSx SINE Alu 1 300 -12 290 49 0 0 chr9 7406029 7406070 -134865374 - FLAM_A SINE Alu -71 61 21 1177 174 0 15 chr9 7406072 7406267 -134865177 - AluJo SINE Alu -119 193 2 251 234 78 13 chr9 7406634 7406711 -134864733 + L1MC/D LINE L1 5800 5881 -1927 387 261 203 39 chr9 7408253 7408460 -134862984 + MIR SINE MIR 12 252 -10 21 36 0 0 chr9 7409131 7409159 -134862285 + AT_rich Low_complexity Low_complexity 1 28 0 26 50 0 0 chr9 7409310 7409350 -134862094 + AT_rich Low_complexity Low_complexity 1 40 0 522 280 63 0 chr9 7409808 7409951 -134861493 - MIR SINE MIR -3 259 108 267 174 167 72 chr9 7409980 7410118 -134861326 + L1ME4a LINE L1 5314 5464 -2344 486 275 53 8 chr9 7410195 7410439 -134861005 + L1ME4a LINE L1 5595 5849 -272 2118 110 3 41 chr9 7413368 7413685 -134857759 - AluSp SINE Alu -8 305 1 1335 210 24 66 chr9 7413891 7414272 -134857172 + MLT1A1 LTR MaLR 1 365 0 839 138 239 0 chr9 7415706 7415873 -134855571 - AluJo SINE Alu -105 207 1 1854 273 150 16 chr9 7416550 7417316 -134854128 + L2 LINE L2 837 1705 -1609 5296 116 15 29 chr9 7417338 7418172 -134853272 - L1PA16 LINE L1 -13 6153 5309 2199 103 3 7 chr9 7418172 7418464 -134852980 - AluSg SINE Alu -19 291 1 5296 116 15 29 chr9 7418464 7418532 -134852912 - L1PA16 LINE L1 -857 5309 5242 599 59 0 12 chr9 7418532 7418617 -134852827 + (TTTC)n Simple_repeat Simple_repeat 1 84 0 5296 116 15 29 chr9 7418617 7418731 -134852713 - L1PA16 LINE L1 -924 5242 5160 310 325 57 46 chr9 7418732 7418842 -134852602 + L2 LINE L2 1701 1808 -1506 501 62 0 0 chr9 7418842 7418907 -134852537 + (TCTA)n Simple_repeat Simple_repeat 1 65 0 2115 111 4 0 chr9 7418908 7419188 -134852256 - AluSq SINE Alu -32 281 1 310 325 57 46 chr9 7419188 7419269 -134852175 + L2 LINE L2 1807 1896 -1418 1076 190 143 60 chr9 7419283 7419668 -134851776 - LTR8A LTR ERV1 0 727 311 1380 121 43 5 chr9 7419669 7419876 -134851568 + AluSg/x SINE Alu 77 291 -21 929 160 166 22 chr9 7419914 7420249 -134851195 - LTR29 LTR ERV1 -198 424 1 1946 276 122 41 chr9 7420268 7421331 -134850113 + L2 LINE L2 1937 3090 -223 499 224 65 0 chr9 7421333 7421440 -134850004 + L2 LINE L2 3200 3313 0 1842 185 0 0 chr9 7421778 7422076 -134849368 + AluJo SINE Alu 1 298 -14 22 35 0 0 chr9 7422542 7422571 -134848873 + AT_rich Low_complexity Low_complexity 1 29 0 260 252 41 16 chr9 7423587 7423710 -134847734 + LTR33 LTR ERVL 1 126 -395 241 294 55 40 chr9 7423798 7423999 -134847445 + LTR33 LTR ERVL 303 506 -15 303 286 29 0 chr9 7424711 7424781 -134846663 + C-rich Low_complexity Low_complexity 3 74 0 450 216 29 0 chr9 7424802 7424904 -134846540 - FLAM_C SINE Alu -26 107 3 459 0 0 0 chr9 7426403 7426454 -134844990 + (TCTA)n Simple_repeat Simple_repeat 2 52 0 1954 153 0 0 chr9 7426455 7426743 -134844701 - AluSx SINE Alu -24 288 1 235 350 91 0 chr9 7427127 7427270 -134844174 + L2 LINE L2 1813 1968 -1346 517 280 242 22 chr9 7427274 7427638 -134843806 + L2 LINE L2 1723 2166 -1148 308 233 100 33 chr9 7427640 7427760 -134843684 + L2 LINE L2 3159 3286 -27 21 0 0 0 chr9 7427913 7427934 -134843510 + AT_rich Low_complexity Low_complexity 1 21 0 204 40 0 0 chr9 7428779 7428804 -134842640 + (T)n Simple_repeat Simple_repeat 1 25 0 207 305 102 31 chr9 7428918 7429046 -134842398 - MIR SINE MIR -92 170 34 365 187 78 12 chr9 7429800 7429966 -134841478 + (TA)n Simple_repeat Simple_repeat 2 178 0 332 199 54 36 chr9 7429911 7430077 -134841367 + (TATAA)n Simple_repeat Simple_repeat 5 173 0 * 251 254 45 0 chr9 7430159 7430226 -134841218 - MER5B DNA MER1_type -7 171 102 1915 170 0 0 chr9 7430820 7431114 -134840330 - AluJb SINE Alu -18 294 1 223 203 95 0 chr9 7431913 7431987 -134839457 - MIR SINE MIR -132 130 50 722 220 56 33 chr9 7432010 7432224 -134839220 + MER20 DNA MER1_type 1 219 0 324 143 0 0 chr9 7433162 7433218 -134838226 - Alu SINE Alu 0 302 247 23 0 0 0 chr9 7433468 7433491 -134837953 + AT_rich Low_complexity Low_complexity 1 23 0 1769 83 36 7 chr9 7433491 7433769 -134837675 - L1MA5A LINE L1 -1 6296 6011 420 276 70 68 chr9 7434462 7434846 -134836598 + L1ME4a LINE L1 5477 5861 -260 189 107 0 0 chr9 7434853 7434881 -134836563 + (TA)n Simple_repeat Simple_repeat 1 28 0 2223 100 3 0 chr9 7434901 7435190 -134836254 - AluSq SINE Alu -23 290 1 2631 85 26 8 chr9 7438464 7438852 -134832592 + L1MA1 LINE L1 5908 6302 0 718 231 75 6 chr9 7438988 7439161 -134832283 + MER58A DNA MER1_type 39 223 -1 21 0 0 0 chr9 7440534 7440555 -134830889 + AT_rich Low_complexity Low_complexity 1 21 0 2112 122 3 10 chr9 7440753 7441049 -134830395 + AluSx SINE Alu 1 294 -18 711 227 91 91 chr9 7441627 7442187 -134829257 - MER69 DNA AcHobo -207 2319 1760 486 281 52 30 chr9 7442228 7442459 -134828985 - MER69 DNA AcHobo -914 312 77 26 0 0 0 chr9 7442886 7442912 -134828532 + AT_rich Low_complexity Low_complexity 1 26 0 349 290 84 39 chr9 7443064 7443219 -134828225 + MER5B DNA MER1_type 17 178 0 10115 46 18 32 chr9 7443823 7445118 -134826326 - SVA Other Other -6 1380 104 1430 183 129 0 chr9 7445361 7445624 -134825820 - AluJb SINE Alu -5 297 1 1306 206 14 27 chr9 7445878 7446170 -134825274 + AluJb SINE Alu 1 288 -24 260 217 0 0 chr9 7446595 7446655 -134824789 + A-rich Low_complexity Low_complexity 1 60 0 360 0 0 0 chr9 7446728 7446768 -134824676 + (CA)n Simple_repeat Simple_repeat 2 41 0 287 254 0 44 chr9 7447031 7447145 -134824299 - Charlie8 DNA MER1_type -2247 170 62 274 238 12 0 chr9 7447154 7447234 -134824210 + (CA)n Simple_repeat Simple_repeat 2 82 0 576 110 134 0 chr9 7447633 7447760 -134823684 + L1P LINE L1 5254 5397 -764 948 146 139 0 chr9 7447760 7447918 -134823526 + AluSx SINE Alu 19 198 -114 24 32 0 0 chr9 7448262 7448293 -134823151 + AT_rich Low_complexity Low_complexity 1 31 0 203 214 34 51 chr9 7448814 7448931 -134822513 + (CATATA)n Simple_repeat Simple_repeat 3 117 0 2093 118 0 0 chr9 7449090 7449378 -134822066 + AluSx SINE Alu 1 288 -24 21 0 0 0 chr9 7449378 7449399 -134822045 + AT_rich Low_complexity Low_complexity 1 21 0 271 156 0 0 chr9 7449890 7449935 -134821509 + Alu SINE Alu 2 46 -256 29 0 0 0 chr9 7449943 7449972 -134821472 + AT_rich Low_complexity Low_complexity 1 29 0 532 274 117 48 chr9 7450159 7450389 -134821055 - MIR SINE MIR -11 251 6 1331 110 0 6 chr9 7451504 7451686 -134819758 + AluSg/x SINE Alu 119 299 -11 28 29 0 0 chr9 7452199 7452234 -134819210 + AT_rich Low_complexity Low_complexity 1 35 0 2414 69 0 10 chr9 7452340 7452644 -134818800 + AluSc SINE Alu 1 301 -8 1136 153 6 0 chr9 7452644 7452821 -134818623 + AluJb SINE Alu 134 311 -1 345 47 0 0 chr9 7452876 7452919 -134818525 + (TG)n Simple_repeat Simple_repeat 1 43 0 647 174 16 0 chr9 7452919 7453040 -134818404 + L1MC1 LINE L1 6210 6332 -1 1128 151 170 0 chr9 7453160 7453378 -134818066 - AluJo SINE Alu -57 255 1 1539 166 95 14 chr9 7454706 7454989 -134816455 - AluJo SINE Alu -6 306 1 311 188 16 16 chr9 7455252 7455316 -134816128 - MER20 DNA MER1_type -154 65 2 186 43 0 0 chr9 7456144 7456167 -134815277 + (CAAAAA)n Simple_repeat Simple_repeat 4 26 0 621 260 158 0 chr9 7457442 7457619 -134813825 + MIR SINE MIR 34 238 -24 21 36 0 0 chr9 7458459 7458487 -134812957 + AT_rich Low_complexity Low_complexity 1 28 0 3754 60 0 4 chr9 7458519 7459002 -134812442 - L1PA5 LINE L1 0 6154 5674 1873 57 0 4 chr9 7459002 7459232 -134812212 + AluY SINE Alu 73 301 -10 1171 108 0 0 chr9 7459239 7459396 -134812048 + AluSg/x SINE Alu 138 294 -18 269 193 24 12 chr9 7459714 7459797 -134811647 + (TA)n Simple_repeat Simple_repeat 2 85 0 794 283 87 49 chr9 7459870 7460364 -134811080 - MLT2B1 LTR ERVL -7 513 1 467 198 0 0 chr9 7460366 7460467 -134810977 + L1M4 LINE L1 3821 3921 -2225 414 268 82 64 chr9 7460528 7460621 -134810823 + L1M4 LINE L1 4013 4103 -2043 2257 50 43 0 chr9 7460621 7460900 -134810544 - AluYa5 SINE Alu -20 291 1 414 268 82 64 chr9 7460900 7461026 -134810418 + L1M4 LINE L1 4103 4236 -1910 634 282 60 23 chr9 7461182 7461568 -134809876 + L1M4 LINE L1 4945 5344 -802 2177 113 3 3 chr9 7461572 7461873 -134809571 + AluSx SINE Alu 1 301 -11 218 328 89 89 chr9 7462250 7462497 -134808947 + MIR SINE MIR 13 259 -3 23 68 0 0 chr9 7462516 7462560 -134808884 + AT_rich Low_complexity Low_complexity 1 44 0 668 186 34 8 chr9 7462631 7462749 -134808695 + FLAM_C SINE Alu 3 123 -20 1977 144 3 0 chr9 7463382 7463667 -134807777 - AluSx SINE Alu -26 286 1 21 0 0 0 chr9 7464145 7464166 -134807278 + AT_rich Low_complexity Low_complexity 1 21 0 371 246 39 14 chr9 7464295 7464492 -134806952 - MLT1K LTR MaLR -170 418 165 21 57 0 0 chr9 7465474 7465509 -134805935 + AT_rich Low_complexity Low_complexity 1 35 0 377 312 111 11 chr9 7466356 7466545 -134804899 - L2 LINE L2 -6 3307 3100 180 152 0 0 chr9 7466687 7466720 -134804724 + (TA)n Simple_repeat Simple_repeat 1 33 0 712 189 0 15 chr9 7467644 7467776 -134803668 - FLAM_C SINE Alu -13 130 1 321 262 8 74 chr9 7468504 7468626 -134802818 + MIR SINE MIR 60 173 -89 2093 121 7 0 chr9 7468792 7469089 -134802355 - AluSx SINE Alu -13 299 1 277 241 0 100 chr9 7469887 7470002 -134801442 + MIR SINE MIR 34 137 -71 2141 114 14 0 chr9 7470197 7470486 -134800958 + AluSx SINE Alu 7 299 -13 774 136 0 0 chr9 7471441 7471559 -134799885 - AluJo SINE Alu -173 139 22 21 0 0 0 chr9 7471734 7471755 -134799689 + AT_rich Low_complexity Low_complexity 1 21 0 581 280 0 14 chr9 7472524 7472667 -134798777 - MIR SINE MIR -74 188 48 1397 186 29 7 chr9 7472994 7473268 -134798176 - MLT1-int LTR MaLR -456 915 636 549 238 136 25 chr9 7476263 7476549 -134794895 - L1ME4a LINE L1 0 6121 5804 550 244 62 21 chr9 7476825 7477018 -134794426 - MER112 DNA MER1_type -58 202 2 649 179 8 0 chr9 7477887 7478004 -134793440 + FLAM_C SINE Alu 1 118 -15 486 0 0 0 chr9 7478006 7478060 -134793384 + (CA)n Simple_repeat Simple_repeat 2 55 0 211 180 10 90 chr9 7478223 7478323 -134793121 + T-rich Low_complexity Low_complexity 1 92 0 319 301 164 44 chr9 7479452 7479794 -134791650 + L2 LINE L2 2465 2847 -467 263 360 0 0 chr9 7479986 7480075 -134791369 - L2 LINE L2 -225 3047 2959 2003 148 0 0 chr9 7480148 7480438 -134791006 - AluSx SINE Alu -22 290 1 213 213 0 0 chr9 7480653 7480700 -134790744 + (TG)n Simple_repeat Simple_repeat 2 48 0 969 170 16 6 chr9 7481362 7481544 -134789900 - L1MD1 LINE L1 -5 6237 6054 1661 162 29 35 chr9 7482322 7482636 -134788808 + AluJo SINE Alu 1 312 0 483 18 0 0 chr9 7483107 7483163 -134788281 + (TCCA)n Simple_repeat Simple_repeat 3 58 0 714 308 106 22 chr9 7483164 7483531 -134787913 + L2 LINE L2 2884 3281 -32 1565 180 10 17 chr9 7484232 7484526 -134786918 - AluJo SINE Alu -20 292 1 1529 178 20 49 chr9 7485527 7485831 -134785613 - AluJb SINE Alu -15 297 3 662 200 0 8 chr9 7486201 7486331 -134785113 + FLAM_A SINE Alu 1 129 -4 1859 166 52 28 chr9 7488412 7488737 -134782707 - MER1B DNA MER1_type -6 333 1 249 98 0 0 chr9 7489775 7489816 -134781628 + (CA)n Simple_repeat Simple_repeat 2 42 0 291 253 27 73 chr9 7489876 7490026 -134781418 + L1ME4a LINE L1 5742 5884 -237 2475 58 0 0 chr9 7490124 7490417 -134781027 - AluY SINE Alu -18 293 1 902 89 7 30 chr9 7490439 7490574 -134780870 - L1PB4 LINE L1 -13 6143 6012 253 284 0 11 chr9 7491341 7491436 -134780008 + L1MEd LINE L1 18 111 -6008 215 321 0 37 chr9 7491518 7491599 -134779845 + MIR SINE MIR 116 193 -69 226 240 53 67 chr9 7491975 7492050 -134779394 + L1MEd LINE L1 549 622 -5497 284 273 121 15 chr9 7492077 7492209 -134779235 + MIR3 SINE MIR 31 176 -32 2045 133 0 7 chr9 7492964 7493296 -134778148 + AluSx SINE Alu 1 312 0 32 43 0 0 chr9 7493787 7493833 -134777611 + AT_rich Low_complexity Low_complexity 1 46 0 25 31 0 0 chr9 7494630 7494662 -134776782 + AT_rich Low_complexity Low_complexity 1 32 0 201 219 24 0 chr9 7495161 7495202 -134776242 - MIR SINE MIR -151 111 70 2084 130 0 0 chr9 7496038 7496331 -134775113 - AluSx SINE Alu -13 299 7 533 215 75 5 chr9 7496459 7496645 -134774799 - L1MA7 LINE L1 0 6291 6093 398 339 0 8 chr9 7496888 7497009 -134774435 - MIR SINE MIR -122 140 21 1862 145 0 17 chr9 7497020 7497310 -134774134 - AluSx SINE Alu -27 285 1 22 0 0 0 chr9 7497460 7497482 -134773962 + AT_rich Low_complexity Low_complexity 1 22 0 2833 119 54 29 chr9 7499020 7499298 -134772146 - LTR22B LTR ERVK 0 492 195 2420 80 3 0 chr9 7499298 7499597 -134771847 + AluSq SINE Alu 1 300 -13 2833 119 54 29 chr9 7499597 7499798 -134771646 - LTR22B LTR ERVK -296 196 1 27 0 0 0 chr9 7501076 7501103 -134770341 + AT_rich Low_complexity Low_complexity 1 27 0 568 181 49 62 chr9 7501798 7502041 -134769403 - Charlie1 DNA MER1_type 0 2761 2522 1504 209 16 16 chr9 7502049 7502370 -134769074 + L1M3e LINE L1 2 322 -6708 2538 238 39 62 chr9 7502370 7503416 -134768028 + L1M3e LINE L1 1216 2245 -4792 1511 270 109 10 chr9 7503417 7503913 -134767531 - Charlie1a DNA MER1_type -907 548 4 1929 163 116 2 chr9 7503930 7504334 -134767110 + Tigger2 DNA MER2_type 1 450 -2268 2007 142 10 10 chr9 7504908 7505217 -134766227 + AluSq SINE Alu 3 311 -2 191 286 14 43 chr9 7505283 7505353 -134766091 + L2 LINE L2 3201 3268 -4 1317 188 7 44 chr9 7506215 7506486 -134764958 - AluJo SINE Alu -14 298 38 306 0 0 0 chr9 7509060 7509094 -134762350 + (CA)n Simple_repeat Simple_repeat 2 35 0 39 50 0 0 chr9 7509625 7509685 -134761759 + AT_rich Low_complexity Low_complexity 1 60 0 2434 82 0 0 chr9 7510264 7510567 -134760877 - AluY SINE Alu -8 303 1 2124 127 3 0 chr9 7510567 7510866 -134760578 - AluSx SINE Alu -11 301 1 1949 164 0 3 chr9 7511077 7511376 -134760068 - AluJo SINE Alu -13 299 2 22 35 0 0 chr9 7511621 7511650 -134759794 + AT_rich Low_complexity Low_complexity 1 29 0 1664 170 112 3 chr9 7512190 7512502 -134758942 - MER7A DNA MER2_type 0 346 3 22 0 0 0 chr9 7514700 7514722 -134756722 + AT_rich Low_complexity Low_complexity 1 22 0 1710 137 19 55 chr9 7514723 7515102 -134756342 - L1MA2 LINE L1 -3 7720 7356 301 70 47 0 chr9 7515112 7515155 -134756289 - L1M LINE L1 -895 6826 6782 189 0 0 0 chr9 7515169 7515190 -134756254 + (TG)n Simple_repeat Simple_repeat 2 22 0 14867 170 24 16 chr9 7515194 7515205 -134756239 - L1MA2 LINE L1 -762 6803 6794 2221 83 24 0 chr9 7515205 7515493 -134755951 - AluSx SINE Alu -17 295 1 14867 170 24 16 chr9 7515493 7518390 -134753054 - L1MA2 LINE L1 -771 6794 3921 5598 39 3 0 chr9 7518390 7519064 -134752380 - L1PA4 LINE L1 -8 6147 5472 14867 170 24 16 chr9 7519064 7519971 -134751473 - L1MA2 LINE L1 -3644 3921 3022 2033 142 3 3 chr9 7519971 7520282 -134751162 + AluSx SINE Alu 1 311 -1 14867 170 24 16 chr9 7520282 7523174 -134748270 - L1MA2 LINE L1 -4543 3022 19 39 60 0 0 chr9 7523594 7523661 -134747783 + AT_rich Low_complexity Low_complexity 1 67 0 1638 156 28 0 chr9 7524404 7524693 -134746751 + L1MC1 LINE L1 6037 6333 0 402 57 0 0 chr9 7525171 7525224 -134746220 + (TTTA)n Simple_repeat Simple_repeat 4 56 0 2053 117 7 0 chr9 7525226 7525509 -134745935 - AluSx SINE Alu -27 285 1 213 196 0 0 chr9 7525652 7525698 -134745746 + (TA)n Simple_repeat Simple_repeat 1 46 0 222 37 0 0 chr9 7525725 7525752 -134745692 + (TG)n Simple_repeat Simple_repeat 2 28 0 226 306 68 41 chr9 7526648 7526795 -134744649 - MIR3 SINE MIR -46 162 12 23 0 0 0 chr9 7527191 7527214 -134744230 + AT_rich Low_complexity Low_complexity 1 23 0 5483 140 45 19 chr9 7528130 7529049 -134742395 - L1MA5A LINE L1 0 6297 5403 1874 169 0 6 chr9 7529049 7529363 -134742081 - AluJb SINE Alu 0 312 1 5483 140 45 19 chr9 7529363 7530280 -134741164 - L1MA5A LINE L1 -894 5403 4408 253 224 198 35 chr9 7530808 7530924 -134740520 + L2 LINE L2 3179 3313 0 259 370 8 0 chr9 7532716 7532835 -134738609 - L1MC/D LINE L1 -2153 6450 6331 241 241 36 36 chr9 7533142 7533254 -134738190 - L1MC/D LINE L1 -1070 5871 5760 512 278 159 48 chr9 7533335 7533536 -134737908 - L1MC/D LINE L1 -5082 1849 1672 2205 155 63 17 chr9 7533536 7533950 -134737494 - Tigger2a DNA MER2_type 0 434 2 512 278 159 48 chr9 7533950 7534100 -134737344 - L1MC/D LINE L1 -5259 1672 1459 544 223 107 22 chr9 7534100 7534324 -134737120 - L1MEd LINE L1 -4313 1997 1755 342 169 0 0 chr9 7534345 7534410 -134737034 + CT-rich Low_complexity Low_complexity 4 68 0 423 92 0 0 chr9 7534419 7534484 -134736960 + (TG)n Simple_repeat Simple_repeat 2 66 0 937 305 45 34 chr9 7534484 7535135 -134736309 - L1MEd LINE L1 -4555 1755 1056 2011 136 33 9 chr9 7535143 7535475 -134735969 - MER2 DNA MER2_type -5 340 1 449 291 58 16 chr9 7535564 7535822 -134735622 - L1MC/D LINE L1 -5041 1382 1114 404 265 68 0 chr9 7536201 7536318 -134735126 - MIR SINE MIR -98 164 40 530 280 108 11 chr9 7536914 7537100 -134734344 + MER58A DNA MER1_type 21 224 0 290 370 62 0 chr9 7537101 7537263 -134734181 + MIR SINE MIR 80 251 -11 196 320 144 49 chr9 7538000 7538284 -134733160 - L2 LINE L2 -2 3311 3001 639 303 213 15 chr9 7538479 7539086 -134732358 - L2 LINE L2 -684 2630 1904 338 300 86 7 chr9 7541668 7541808 -134729636 + Charlie8 DNA MER1_type 7 157 -2260 232 340 186 16 chr9 7542227 7542474 -134728970 + L3b LINE CR1 1284 1572 -11 496 183 8 11 chr9 7545913 7546061 -134725383 - MER20 DNA MER1_type -9 210 3 218 191 0 0 chr9 7546404 7546446 -134724998 + L2 LINE L2 3271 3312 -1 438 36 0 0 chr9 7546912 7546968 -134724476 + (GA)n Simple_repeat Simple_repeat 2 57 0 200 200 0 0 chr9 7548365 7548400 -134723044 + CT-rich Low_complexity Low_complexity 2 36 0 1595 114 0 4 chr9 7549030 7549258 -134722186 + AluSc SINE Alu 76 302 -7 251 229 383 11 chr9 7551491 7551666 -134719778 + MIR SINE MIR 21 260 -2 1462 254 34 23 chr9 7552356 7552402 -134719042 + Charlie1 DNA MER1_type 1428 1472 -1289 409 288 54 44 chr9 7552402 7552607 -134718837 + MER63A DNA MER1_type 4 210 0 1462 254 34 23 chr9 7552607 7553000 -134718444 + Charlie1 DNA MER1_type 1472 1872 -889 950 184 40 10 chr9 7552997 7553198 -134718246 + Charlie1 DNA MER1_type 1902 2108 -653 * 694 163 0 0 chr9 7553203 7553326 -134718118 - AluJo SINE Alu -7 305 183 * 721 201 0 14 chr9 7553317 7553461 -134717983 - AluJo SINE Alu -170 142 1 2587 164 93 21 chr9 7553469 7554074 -134717370 + Charlie1 DNA MER1_type 2114 2761 0 2231 92 0 0 chr9 7554505 7554838 -134716606 - AluSc SINE Alu 0 333 1 318 249 46 136 chr9 7554917 7555330 -134716114 - HAL1 LINE L1 -29 2478 2103 323 252 67 17 chr9 7555332 7555451 -134715993 - HAL1 LINE L1 -540 1967 1843 * 409 278 112 0 chr9 7555441 7555610 -134715834 - HAL1 LINE L1 -1602 905 718 1366 280 86 39 chr9 7555616 7556037 -134715407 - HAL1 LINE L1 -1828 679 279 2220 93 0 3 chr9 7556037 7556326 -134715118 - AluY SINE Alu -23 288 1 1366 280 86 39 chr9 7556326 7556432 -134715012 - HAL1 LINE L1 -2228 279 179 1681 194 13 7 chr9 7556432 7556742 -134714702 - AluJb SINE Alu 0 312 1 1366 280 86 39 chr9 7556742 7556855 -134714589 - HAL1 LINE L1 -2328 179 8 27 0 0 0 chr9 7557293 7557320 -134714124 + AT_rich Low_complexity Low_complexity 1 27 0 236 167 0 21 chr9 7557574 7557622 -134713822 - L2 LINE L2 0 3313 3267 449 230 40 55 chr9 7558023 7558223 -134713221 + Charlie5 DNA MER1_type 1 197 -2415 812 180 64 21 chr9 7558227 7558460 -134712984 + Charlie5 DNA MER1_type 2352 2594 -18 21 0 0 0 chr9 7561685 7561706 -134709738 + AT_rich Low_complexity Low_complexity 1 21 0 2368 72 0 3 chr9 7561862 7562154 -134709290 - AluY SINE Alu -20 291 1 252 354 53 0 chr9 7562530 7562643 -134708801 + MIR SINE MIR 11 129 -133 2411 102 0 0 chr9 7562742 7563055 -134708389 - AluSq SINE Alu 0 313 1 237 331 55 8 chr9 7563111 7563238 -134708206 + MIR SINE MIR 130 262 0 627 167 0 0 chr9 7563474 7563570 -134707874 + FRAM SINE Alu 51 146 -30 195 42 0 0 chr9 7563572 7563596 -134707848 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 380 283 101 0 chr9 7563596 7563734 -134707710 - L1MD2 LINE L1 -13 6346 6195 404 300 77 15 chr9 7563830 7564157 -134707287 + L1ME1 LINE L1 1868 2214 -4182 4371 247 79 35 chr9 7564166 7565879 -134705565 + L1ME1 LINE L1 3445 5351 -884 318 95 0 0 chr9 7565879 7565921 -134705523 + 5S rRNA rRNA 1 42 -79 4371 247 79 35 chr9 7565921 7566815 -134704629 + L1ME1 LINE L1 5351 6204 -31 501 156 0 0 chr9 7566871 7566961 -134704483 - L1MA6 LINE L1 0 6300 6211 189 238 111 0 chr9 7567358 7567421 -134704023 + MIR SINE MIR 178 247 -15 194 268 61 24 chr9 7567460 7567542 -134703902 - MIR3 SINE MIR -118 90 6 1993 149 0 10 chr9 7568222 7568524 -134702920 - AluSx SINE Alu -12 300 2 1563 182 49 56 chr9 7569365 7569789 -134701655 + MSTB1 LTR MaLR 3 416 -16 478 114 0 0 chr9 7569868 7569938 -134701506 - AluSp/q SINE Alu -10 303 234 219 373 36 0 chr9 7570336 7570446 -134700998 - MIR SINE MIR -146 116 3 195 129 0 0 chr9 7570512 7570543 -134700901 + (CAA)n Simple_repeat Simple_repeat 3 33 0 364 291 68 0 chr9 7571539 7571656 -134699788 - MIR SINE MIR -76 186 62 22 0 0 0 chr9 7572147 7572169 -134699275 + AT_rich Low_complexity Low_complexity 1 22 0 21 0 0 0 chr9 7572236 7572257 -134699187 + AT_rich Low_complexity Low_complexity 1 21 0 567 209 0 9 chr9 7572872 7572987 -134698457 - MER68 LTR ERV1 -6 556 443 1510 140 34 23 chr9 7573000 7573265 -134698179 - MER68 LTR ERV1 -285 277 10 2043 142 7 0 chr9 7573377 7573680 -134697764 - AluSx SINE Alu -7 305 1 531 294 62 5 chr9 7573806 7574017 -134697427 + Charlie2 DNA MER1_type 12 234 -2628 601 266 131 26 chr9 7574158 7574523 -134696921 + MLT1J1 LTR MaLR 16 422 -28 760 151 45 50 chr9 7574574 7574773 -134696671 + Charlie2a DNA MER1_type 1466 1663 -1199 1028 199 50 9 chr9 7577214 7577435 -134694009 - MER46A DNA MER2_type -1 235 6 1686 175 42 9 chr9 7577438 7577769 -134693675 - MER7A DNA MER2_type -6 340 1 333 0 0 0 chr9 7577770 7577807 -134693637 + (TG)n Simple_repeat Simple_repeat 2 38 0 477 260 106 31 chr9 7578242 7578469 -134692975 + MLT1I LTR MaLR 141 384 -25 445 287 154 0 chr9 7578672 7578815 -134692629 + MIR SINE MIR 70 234 -28 512 344 75 40 chr9 7578836 7579234 -134692210 - L2 LINE L2 -10 3262 2851 248 252 207 9 chr9 7579246 7579357 -134692087 + MIR3 SINE MIR 9 141 -67 26 0 0 0 chr9 7579719 7579745 -134691699 + AT_rich Low_complexity Low_complexity 1 26 0 24 32 0 0 chr9 7579900 7579931 -134691513 + AT_rich Low_complexity Low_complexity 1 31 0 2318 87 0 7 chr9 7579932 7580230 -134691214 + AluSx SINE Alu 1 296 -16 254 225 84 0 chr9 7580855 7580926 -134690518 + Charlie2 DNA MER1_type 93 169 -2613 2150 215 116 26 chr9 7581075 7581971 -134689473 + Charlie2 DNA MER1_type 1847 2823 -39 373 243 83 95 chr9 7582012 7582181 -134689263 + MER5A DNA MER1_type 1 167 -22 183 80 0 0 chr9 7582898 7582923 -134688521 + (A)n Simple_repeat Simple_repeat 1 25 0 21 0 0 0 chr9 7585630 7585651 -134685793 + AT_rich Low_complexity Low_complexity 1 21 0 215 238 284 4 chr9 7586251 7586379 -134685065 - MIR SINE MIR -51 211 41 27 0 0 0 chr9 7587421 7587448 -134683996 + AT_rich Low_complexity Low_complexity 1 27 0 604 190 127 16 chr9 7587650 7587873 -134683571 - Charlie4 DNA MER1_type -20 1941 225 307 319 67 22 chr9 7588045 7588180 -134683264 - MIR SINE MIR -15 247 107 353 0 0 0 chr9 7588408 7588452 -134682992 - L1PA3 LINE L1 -3 6152 6109 488 228 62 28 chr9 7593678 7593823 -134677621 + MER5A DNA MER1_type 4 153 -36 201 206 27 27 chr9 7593932 7594005 -134677439 + T-rich Low_complexity Low_complexity 6 78 0 664 198 43 0 chr9 7594178 7594294 -134677150 + FLAM_C SINE Alu 6 126 -17 2231 123 0 0 chr9 7594398 7594698 -134676746 - AluSx SINE Alu -12 300 1 267 152 0 0 chr9 7594804 7594850 -134676594 + T-rich Low_complexity Low_complexity 3 48 0 216 0 0 0 chr9 7596368 7596392 -134675052 + (T)n Simple_repeat Simple_repeat 1 24 0 412 311 76 58 chr9 7597943 7598168 -134673276 + L2 LINE L2 3044 3272 0 316 346 53 0 chr9 7598222 7598355 -134673089 + MER91C DNA MER1_type 1 140 0 444 295 90 13 chr9 7599304 7599460 -134671984 + MIR SINE MIR 14 181 -81 218 167 0 0 chr9 7599501 7599537 -134671907 + (CTG)n Simple_repeat Simple_repeat 3 38 0 268 330 10 10 chr9 7599564 7599661 -134671783 - MIR SINE MIR -108 154 58 31 26 0 0 chr9 7600706 7600744 -134670700 + AT_rich Low_complexity Low_complexity 1 38 0 648 196 0 0 chr9 7600746 7600853 -134670591 - FLAM_C SINE Alu -36 107 1 225 0 0 0 chr9 7601906 7601931 -134669513 + (TTG)n Simple_repeat Simple_repeat 3 27 0 2027 154 0 0 chr9 7602290 7602595 -134668849 - AluJb SINE Alu -7 305 1 22 0 0 0 chr9 7603321 7603343 -134668101 + AT_rich Low_complexity Low_complexity 1 22 0 1319 133 246 13 chr9 7603869 7604170 -134667274 + THE1C LTR MaLR 5 375 0 240 240 80 30 chr9 7604221 7604321 -134667123 - L1MC5 LINE L1 -1162 6799 6695 23 0 0 0 chr9 7604465 7604488 -134666956 + AT_rich Low_complexity Low_complexity 1 23 0 795 202 32 87 chr9 7605202 7605295 -134666149 - MIR SINE MIR -10 252 155 1022 184 108 0 chr9 7605295 7605507 -134665937 + MER46A DNA MER2_type 2 236 0 795 202 32 87 chr9 7605507 7605666 -134665778 - MIR SINE MIR -107 155 14 237 308 88 22 chr9 7605650 7605741 -134665703 - L2 LINE L2 -343 2970 2874 * 299 156 31 0 chr9 7608094 7608158 -134663286 - MER116 DNA Mariner -2 78 13 1524 161 93 21 chr9 7608882 7609173 -134662271 + AluJo SINE Alu 1 312 0 305 321 102 21 chr9 7611011 7611198 -134660246 - MIR SINE MIR 0 262 61 370 208 0 10 chr9 7611584 7611685 -134659759 - L1M4 LINE L1 -1424 4722 4623 378 0 0 0 chr9 7611685 7611727 -134659717 + (CA)n Simple_repeat Simple_repeat 2 43 0 457 219 123 102 chr9 7613410 7613831 -134657613 + Charlie4a DNA MER1_type 59 488 -20 306 343 96 36 chr9 7613919 7614085 -134657359 + L2 LINE L2 3076 3251 -21 253 186 119 51 chr9 7615045 7615163 -134656281 - L1ME4a LINE L1 -46 6075 5950 1615 221 88 24 chr9 7615168 7615666 -134655778 - MLT1H LTR MaLR -19 530 1 2306 119 111 3 chr9 7616086 7616298 -134655146 - MSTA LTR MaLR 0 428 240 243 0 0 0 chr9 7616298 7616325 -134655119 + (CA)n Simple_repeat Simple_repeat 1 27 0 180 0 0 0 chr9 7616324 7616344 -134655100 + (TC)n Simple_repeat Simple_repeat 2 21 0 * 2306 119 111 3 chr9 7616325 7616517 -134654927 - MSTA LTR MaLR -188 240 1 205 271 45 98 chr9 7616536 7616669 -134654775 + MIR SINE MIR 64 189 -73 193 300 118 64 chr9 7617597 7617707 -134653737 - L2 LINE L2 0 3272 3157 327 200 100 20 chr9 7618132 7618232 -134653212 - MIR SINE MIR -82 180 73 215 327 51 63 chr9 7619088 7619342 -134652102 + L2 LINE L2 2726 2976 -338 212 179 0 0 chr9 7620106 7620145 -134651299 - MIR SINE MIR -6 256 218 257 181 0 84 chr9 7620175 7620258 -134651186 - L1M4 LINE L1 -5870 672 597 2021 267 104 27 chr9 7620489 7621071 -134650373 + L1MC4 LINE L1 6459 6995 -1047 387 119 0 0 chr9 7621071 7621138 -134650306 + (TGGA)n Simple_repeat Simple_repeat 4 70 0 2021 267 104 27 chr9 7621138 7621681 -134649763 + L1MC4 LINE L1 6995 7671 -371 239 250 0 0 chr9 7621801 7621849 -134649595 + (CATATA)n Simple_repeat Simple_repeat 4 51 0 281 129 0 165 chr9 7621898 7621983 -134649461 + L1MC4 LINE L1 7960 8030 -12 23 33 0 0 chr9 7621987 7622017 -134649427 + AT_rich Low_complexity Low_complexity 1 30 0 204 304 0 0 chr9 7622066 7622122 -134649322 + T-rich Low_complexity Low_complexity 2 57 0 487 140 131 19 chr9 7622500 7622607 -134648837 - MSTC LTR MaLR -309 119 1 234 91 0 0 chr9 7622829 7622862 -134648582 + (TG)n Simple_repeat Simple_repeat 2 34 0 239 324 39 39 chr9 7623592 7623694 -134647750 - L2 LINE L2 -1 3271 3170 690 277 37 16 chr9 7623809 7624051 -134647393 - MIR SINE MIR 0 262 16 1836 144 0 33 chr9 7624813 7625119 -134646325 - AluJo SINE Alu -8 304 9 605 119 83 0 chr9 7625442 7625551 -134645893 - MLT2B1 LTR ERVL 0 520 403 912 121 0 0 chr9 7625552 7625676 -134645768 - AluJb SINE Alu -188 124 1 369 175 62 0 chr9 7630154 7630234 -134641210 - L1M4 LINE L1 -852 5294 5210 2599 189 32 15 chr9 7630245 7630909 -134640535 - L1ME LINE L1 -369 5797 5123 23 0 0 0 chr9 7631044 7631067 -134640377 + AT_rich Low_complexity Low_complexity 1 23 0 23 0 0 0 chr9 7632127 7632150 -134639294 + AT_rich Low_complexity Low_complexity 1 23 0 1858 163 0 16 chr9 7632591 7632897 -134638547 + AluJo SINE Alu 1 301 -11 1773 183 0 10 chr9 7633048 7633354 -134638090 + AluJb SINE Alu 1 303 -9 1668 147 0 11 chr9 7633860 7634125 -134637319 - MER50 LTR ERV1 -38 696 435 1326 129 26 35 chr9 7634122 7634354 -134637090 - MER50 LTR ERV1 -504 230 1 * 219 158 35 18 chr9 7634376 7634433 -134637011 + T-rich Low_complexity Low_complexity 1 58 0 335 398 8 0 chr9 7634745 7634863 -134636581 - L2 LINE L2 -25 3247 3129 624 310 105 29 chr9 7635044 7635238 -134636206 - L2 LINE L2 -457 2857 2679 1214 126 10 20 chr9 7635238 7635406 -134636038 + MER107 DNA MER1_type 1 168 -29 182 36 0 36 chr9 7635406 7635434 -134636010 + (CAAAA)n Simple_repeat Simple_repeat 2 28 0 1214 126 10 20 chr9 7635434 7635464 -134635980 + MER107 DNA MER1_type 168 197 0 624 310 105 29 chr9 7635464 7635756 -134635688 - L2 LINE L2 -635 2679 2334 23 0 0 0 chr9 7636154 7636177 -134635267 + AT_rich Low_complexity Low_complexity 1 23 0 654 169 81 16 chr9 7636347 7636471 -134634973 - FLAM_C SINE Alu -10 133 2 189 0 0 0 chr9 7636912 7636933 -134634511 + (TG)n Simple_repeat Simple_repeat 2 22 0 635 152 0 139 chr9 7638165 7638330 -134633114 - FLAM_C SINE Alu 0 143 2 214 258 135 0 chr9 7638528 7638617 -134632827 + MIR3 SINE MIR 85 185 -23 534 310 82 71 chr9 7639574 7640109 -134631335 - L3 LINE CR1 -50 1527 987 848 174 192 11 chr9 7640122 7640398 -134631046 + L1ME4a LINE L1 5793 6118 -3 361 241 167 30 chr9 7641765 7641884 -134629560 + MIR SINE MIR 17 118 -144 4585 175 108 125 chr9 7641884 7643665 -134627779 - MER52A LTR ERV1 0 1755 4 361 241 167 30 chr9 7643665 7643750 -134627694 + MIR SINE MIR 118 238 -24 194 247 130 0 chr9 7644575 7644652 -134626792 + L2 LINE L2 3162 3248 -24 795 161 0 0 chr9 7645087 7645211 -134626233 + FLAM_C SINE Alu 1 124 -9 1407 150 80 36 chr9 7645468 7645742 -134625702 + AluJo SINE Alu 1 286 -26 699 269 50 17 chr9 7646204 7646501 -134624943 + L1ME4a LINE L1 5599 5905 -216 1508 142 46 7 chr9 7646504 7646786 -134624658 + L1MB3 LINE L1 5891 6183 0 894 110 7 29 chr9 7647163 7647299 -134624145 - FLAM_C SINE Alu 0 133 1 232 333 39 16 chr9 7647454 7647583 -134623861 - MARNA DNA Mariner -178 408 277 456 244 59 7 chr9 7647746 7647881 -134623563 - LTR67 LTR ERVL -8 549 408 180 0 0 0 chr9 7648001 7648021 -134623423 + (CTG)n Simple_repeat Simple_repeat 1 20 0 37874 84 14 8 chr9 7649418 7655519 -134615925 - L1PA6 LINE L1 -2 6152 13 647 222 7 15 chr9 7657207 7657342 -134614102 - MER119 DNA MER1_type -1 582 449 396 272 76 0 chr9 7657360 7657452 -134613992 - MER119 DNA MER1_type -478 105 7 309 198 35 78 chr9 7658810 7658926 -134612518 + MIR SINE MIR 102 212 -50 240 86 0 0 chr9 7660499 7660534 -134610910 + (TG)n Simple_repeat Simple_repeat 2 36 0 26 30 0 0 chr9 7660714 7660747 -134610697 + AT_rich Low_complexity Low_complexity 1 33 0 25 51 0 0 chr9 7661202 7661241 -134610203 + AT_rich Low_complexity Low_complexity 1 39 0 501 235 9 17 chr9 7661301 7661416 -134610028 - MER81 DNA DNA 0 114 1 2217 111 0 19 chr9 7661958 7662274 -134609170 + AluSq SINE Alu 1 310 -3 1458 161 96 38 chr9 7662841 7663132 -134608312 + AluJb SINE Alu 1 308 -4 2280 103 7 0 chr9 7663390 7663691 -134607753 - AluSc SINE Alu -6 303 1 1385 114 31 22 chr9 7664878 7665106 -134606338 + MER30 DNA MER1_type 1 230 0 24 0 0 0 chr9 7665887 7665911 -134605533 + AT_rich Low_complexity Low_complexity 1 24 0 200 344 33 0 chr9 7667073 7667163 -134604281 - L2 LINE L2 -6 3266 3174 234 280 122 0 chr9 7669999 7670106 -134601338 - MIR3 SINE MIR -19 189 70 227 176 221 15 chr9 7670161 7670229 -134601215 - MLT1G1 LTR MaLR -36 559 478 279 306 68 27 chr9 7672014 7672161 -134599283 - MIR SINE MIR -13 249 97 1088 167 63 9 chr9 7672331 7672553 -134598891 + L1ME1 LINE L1 5928 6161 -5 249 324 69 6 chr9 7672666 7672839 -134598605 - L2 LINE L2 -1153 2161 1978 1051 284 39 56 chr9 7672980 7673392 -134598052 - L1MDa LINE L1 -6079 461 57 2214 117 10 0 chr9 7673419 7673728 -134597716 - AluSx SINE Alu 0 312 1 2083 184 86 4 chr9 7674129 7674595 -134596849 + MLT1D LTR MaLR 2 505 0 503 196 41 0 chr9 7674784 7674895 -134596549 - L1MB7 LINE L1 0 6174 6055 1533 181 83 0 chr9 7674950 7675226 -134596218 - AluJb SINE Alu -13 299 1 521 180 54 31 chr9 7675867 7676105 -134595339 + MER46C DNA MER2_type 61 338 0 2347 187 20 47 chr9 7676267 7676409 -134595035 + MLT2B2 LTR ERVL 1 145 -370 2728 98 8 0 chr9 7676409 7676768 -134594676 + THE1B LTR MaLR 3 364 0 2347 187 20 47 chr9 7676768 7677118 -134594326 + MLT2B2 LTR ERVL 145 480 -35 248 224 0 0 chr9 7677149 7677207 -134594237 + MLT2B2 LTR ERVL 458 515 0 6422 64 0 3 chr9 7677226 7678008 -134593436 + LTR17 LTR ERV1 1 780 0 312 370 60 10 chr9 7679190 7679390 -134592054 + MIR SINE MIR 21 230 -32 216 0 0 0 chr9 7681054 7681078 -134590366 + (T)n Simple_repeat Simple_repeat 1 24 0 185 283 98 22 chr9 7681148 7681240 -134590204 + L2 LINE L2 3209 3307 -6 595 234 13 19 chr9 7681243 7681397 -134590047 + MIR SINE MIR 88 240 -22 187 220 20 0 chr9 7681428 7681478 -134589966 + L2 LINE L2 3263 3313 0 1606 159 58 18 chr9 7681531 7681808 -134589636 - AluJo SINE Alu -16 296 9 2377 105 48 20 chr9 7681999 7682352 -134589092 - THE1B LTR MaLR -1 363 1 202 292 6 123 chr9 7683224 7683287 -134588157 + MER5B DNA MER1_type 3 72 -106 2237 112 3 0 chr9 7683287 7683590 -134587854 + AluSq SINE Alu 1 304 -9 202 292 6 123 chr9 7683590 7683697 -134587747 + MER5B DNA MER1_type 72 153 -25 306 269 129 65 chr9 7683815 7684001 -134587443 + MIR SINE MIR 20 217 -45 321 292 29 22 chr9 7684246 7684383 -134587061 + HAL1 LINE L1 1 138 -2369 677 228 61 6 chr9 7684412 7684592 -134586852 + HAL1 LINE L1 1562 1751 -756 777 340 54 4 chr9 7684618 7684897 -134586547 + LTR33 LTR ERVL 48 340 -181 1295 239 49 72 chr9 7684917 7685487 -134585957 + HAL1 LINE L1 1836 2392 -115 27 29 0 0 chr9 7686788 7686822 -134584622 + AT_rich Low_complexity Low_complexity 1 34 0 2117 134 0 17 chr9 7686822 7687121 -134584323 - AluSx SINE Alu -16 296 3 268 319 141 16 chr9 7687529 7687714 -134583730 - MIR SINE MIR -8 254 47 681 98 0 0 chr9 7688827 7688939 -134582505 + (TCCA)n Simple_repeat Simple_repeat 3 114 0 1275 84 0 0 chr9 7688953 7689240 -134582204 + (TCCA)n Simple_repeat Simple_repeat 1 287 0 288 354 9 0 chr9 7689242 7689355 -134582089 - L2 LINE L2 -14 3299 3186 406 253 0 0 chr9 7690374 7690473 -134580971 + L1MC/D LINE L1 5706 5804 -2004 2217 282 131 25 chr9 7690577 7692021 -134579423 + L2 LINE L2 1481 3084 -229 382 281 44 0 chr9 7692059 7692173 -134579271 - MER91C DNA MER1_type -17 123 5 1065 52 40 12 chr9 7692214 7692387 -134579057 + (TTTC)n Simple_repeat Simple_repeat 2 179 0 2112 132 7 0 chr9 7692389 7692685 -134578759 - AluSx SINE Alu -14 298 1 323 290 145 0 chr9 7692689 7692820 -134578624 + L2 LINE L2 3164 3313 0 307 303 13 26 chr9 7692842 7692997 -134578447 + HAL1b LINE L1 1189 1341 -7 471 269 140 5 chr9 7693012 7693205 -134578239 + MIR SINE MIR 30 248 -14 213 120 60 0 chr9 7693225 7693275 -134578169 + (TTA)n Simple_repeat Simple_repeat 2 54 0 1793 173 3 3 chr9 7694087 7694371 -134577073 + AluJo SINE Alu 5 288 -24 837 282 50 31 chr9 7696612 7696935 -134574509 + HAL1 LINE L1 11 339 -2168 4842 128 11 7 chr9 7697314 7698059 -134573385 - L1MC1 LINE L1 -1 6332 5585 2101 100 0 4 chr9 7698247 7698518 -134572926 + AluSq SINE Alu 5 274 -39 880 228 46 32 chr9 7698580 7698799 -134572645 - MER58A DNA MER1_type -2 222 1 661 283 79 18 chr9 7698884 7699163 -134572281 - MLT1K LTR MaLR -2 586 291 668 154 30 124 chr9 7699307 7699508 -134571936 + MER5A DNA MER1_type 3 184 -5 232 268 82 10 chr9 7699526 7699623 -134571821 + L2 LINE L2 3121 3224 -48 1614 164 98 14 chr9 7700362 7700648 -134570796 - AluSx SINE Alu -2 310 1 994 199 92 5 chr9 7701058 7701264 -134570180 + MER58A DNA MER1_type 1 224 0 628 152 0 9 chr9 7701382 7701487 -134569957 - AluJ SINE Alu -19 293 190 899 150 0 0 chr9 7701494 7701627 -134569817 - AluJ SINE Alu -179 133 1 403 199 87 132 chr9 7701634 7702079 -134569365 - L1MC4 LINE L1 -1 8041 7549 271 270 22 31 chr9 7704614 7704752 -134566692 - MLT1J LTR MaLR -339 172 110 268 200 125 12 chr9 7704747 7704827 -134566617 - MLT1L LTR MaLR -524 91 3 * 244 184 28 138 chr9 7705596 7705705 -134565739 - MER5A DNA MER1_type -30 159 63 204 278 40 71 chr9 7705772 7705898 -134565546 - MIR SINE MIR -19 243 122 248 75 0 25 chr9 7706306 7706346 -134565098 + (GA)n Simple_repeat Simple_repeat 2 40 0 548 270 56 19 chr9 7706707 7706920 -134564524 - MIR SINE MIR -26 236 17 1565 147 13 63 chr9 7707958 7708258 -134563186 - AluJo SINE Alu -23 289 5 620 284 110 78 chr9 7708866 7709292 -134562152 + LTR67 LTR ERVL 115 554 -3 637 196 0 0 chr9 7709341 7709443 -134562001 + FLAM_C SINE Alu 17 118 -25 270 0 0 0 chr9 7709447 7709477 -134561967 + (CAAA)n Simple_repeat Simple_repeat 2 31 0 2216 116 10 0 chr9 7709804 7710097 -134561347 - AluSx SINE Alu -16 296 1 34272 93 55 10 chr9 7710323 7716196 -134555248 + L1PA6 LINE L1 11 6153 -1 195 362 17 9 chr9 7716219 7716335 -134555109 + L2 LINE L2 2942 3058 -214 421 234 81 16 chr9 7716921 7717069 -134554375 + MIR3 SINE MIR 18 157 -51 249 291 13 0 chr9 7717285 7717364 -134554080 + MLT1L LTR MaLR 1 80 -535 249 108 0 0 chr9 7717603 7717640 -134553804 + (TCCC)n Simple_repeat Simple_repeat 4 40 0 461 151 12 0 chr9 7717791 7717877 -134553567 + CT-rich Low_complexity Low_complexity 4 90 0 214 311 0 0 chr9 7718581 7718642 -134552802 - L2 LINE L2 -9 3263 3203 26 0 0 0 chr9 7718649 7718675 -134552769 + AT_rich Low_complexity Low_complexity 1 26 0 875 296 88 21 chr9 7718712 7719185 -134552259 + MLT2F LTR ERVL 1 434 -229 484 237 22 22 chr9 7719203 7719342 -134552102 + MLT2E LTR ERVL 475 613 -15 233 348 8 39 chr9 7719374 7719466 -134551978 + MLT1-int LTR MaLR 292 385 -986 2514 118 6 6 chr9 7719466 7719830 -134551614 - THE1B LTR MaLR 0 364 1 233 348 8 39 chr9 7719830 7719996 -134551448 + MLT1-int LTR MaLR 385 542 -829 24 0 0 0 chr9 7720398 7720422 -134551022 + AT_rich Low_complexity Low_complexity 1 24 0 760 333 68 12 chr9 7720655 7720994 -134550450 + LTR16C LTR ERVL 133 490 -1 186 321 24 0 chr9 7721113 7721197 -134550247 - L2 LINE L2 -315 2957 2872 * 234 333 29 0 chr9 7721188 7721257 -134550187 - MER91A DNA MER1_type -7 189 119 360 310 26 0 chr9 7721303 7721419 -134550025 - MER91A DNA MER1_type -40 156 38 273 263 38 0 chr9 7721821 7721901 -134549543 + MLT1J2 LTR MaLR 67 149 -301 227 196 0 20 chr9 7722573 7722624 -134548820 + (CA)n Simple_repeat Simple_repeat 2 51 0 378 85 0 0 chr9 7723228 7723287 -134548157 + (TG)n Simple_repeat Simple_repeat 1 59 0 229 250 42 90 chr9 7723401 7723545 -134547899 - MIR SINE MIR 0 262 126 696 224 56 28 chr9 7724159 7724338 -134547106 - MIR SINE MIR -66 196 13 1653 177 24 3 chr9 7724417 7724711 -134546733 + AluJb SINE Alu 1 300 -12 204 40 0 0 chr9 7724714 7724739 -134546705 + (CAA)n Simple_repeat Simple_repeat 3 27 0 295 299 120 33 chr9 7725342 7725526 -134545918 - MIR SINE MIR -6 256 57 636 167 0 0 chr9 7725827 7725917 -134545527 - AluJ/FLAM SINE Alu -221 91 2 4640 169 63 3 chr9 7726284 7727171 -134544273 + L1MD1 LINE L1 5292 6231 -11 274 231 0 0 chr9 7727173 7727238 -134544206 + MARNA DNA Mariner 327 391 -195 316 226 0 0 chr9 7727452 7727514 -134543930 - MER21B LTR ERV1 -144 719 658 * 3016 99 39 27 chr9 7727508 7727994 -134543450 - LTR21A LTR ERV1 -13 492 1 1393 188 82 36 chr9 7727996 7728300 -134543144 - MER21B LTR ERV1 -202 661 344 434 194 155 0 chr9 7728362 7728465 -134542979 - MER21B LTR ERV1 -647 216 98 376 127 228 0 chr9 7728490 7728569 -134542875 - FRAM SINE Alu -2 164 68 563 176 0 0 chr9 7728593 7728678 -134542766 - FRAM/FAM SINE Alu -92 84 1 397 210 25 0 chr9 7728697 7728778 -134542666 - MER21B LTR ERV1 -760 103 21 366 309 9 9 chr9 7728941 7729051 -134542393 - MIR SINE MIR -60 148 39 757 271 65 0 chr9 7729790 7730004 -134541440 - MIR SINE MIR -13 249 22 1984 123 3 49 chr9 7730005 7730330 -134541114 - AluJb SINE Alu -2 310 1 265 242 61 53 chr9 7731517 7731649 -134539795 - L2 LINE L2 -23 3290 3158 2446 178 48 85 chr9 7731717 7732256 -134539188 + LTR40a LTR ERVL 1 519 0 306 280 67 16 chr9 7733431 7733624 -134537820 + L1MEd LINE L1 638 840 -5279 1006 196 6 0 chr9 7733682 7733855 -134537589 + L1MDa LINE L1 19 192 -6348 * 2872 181 120 107 chr9 7733853 7734153 -134537291 + L1MDa LINE L1 807 1102 -5438 1725 189 3 7 chr9 7734153 7734454 -134536990 + AluJo SINE Alu 1 300 -12 2872 181 120 107 chr9 7734454 7735169 -134536275 + L1MDa LINE L1 1102 1835 -4705 1077 154 66 0 chr9 7735604 7735786 -134535658 - AluSc SINE Alu -2 307 114 2789 129 35 2 chr9 7735949 7736374 -134535070 + Tigger2 DNA MER2_type 2280 2718 0 207 195 0 24 chr9 7736655 7736681 -134534763 + CT-rich Low_complexity Low_complexity 2 28 -13 2201 108 3 10 chr9 7736681 7736995 -134534449 - AluSx SINE Alu 0 312 1 207 195 0 24 chr9 7736995 7737009 -134534435 + CT-rich Low_complexity Low_complexity 28 41 0 276 261 165 17 chr9 7737320 7737435 -134534009 + MIR3 SINE MIR 13 144 -64 379 299 25 80 chr9 7737492 7737693 -134533751 - MLT1J LTR MaLR -104 407 218 246 65 0 0 chr9 7737722 7737753 -134533691 - MLT1J2 LTR MaLR -356 94 64 257 235 20 0 chr9 7739232 7739283 -134532161 - MLT1K LTR MaLR 0 588 537 2038 141 76 17 chr9 7740063 7740417 -134531027 - THE1C LTR MaLR 0 375 1 242 314 157 0 chr9 7740695 7740816 -134530628 + MIR SINE MIR 11 150 -112 345 229 41 74 chr9 7741093 7741127 -134530317 + MIR SINE MIR 141 175 -87 536 313 44 0 chr9 7741127 7741309 -134530135 + MER91B DNA MER1_type 1 190 0 345 229 41 74 chr9 7741309 7741396 -134530048 + MIR SINE MIR 175 258 -4 256 300 43 21 chr9 7741556 7741696 -134529748 - L1MC4 LINE L1 -15 8027 7885 3362 210 26 41 chr9 7741836 7741890 -134529554 - L1ME2 LINE L1 -10 6154 6101 2286 105 0 0 chr9 7741890 7742185 -134529259 + AluSx SINE Alu 1 295 -17 3362 210 26 41 chr9 7742185 7742254 -134529190 - L1ME2 LINE L1 -63 6101 6032 2232 112 3 3 chr9 7742254 7742566 -134528878 + AluSx SINE Alu 1 312 0 3362 210 26 41 chr9 7742566 7743289 -134528155 - L1ME2 LINE L1 -132 6032 5320 1019 222 48 4 chr9 7743286 7743538 -134527906 - L1MD3 LINE L1 -2 7993 7731 * 1755 145 91 0 chr9 7743547 7743823 -134527621 - AluSx SINE Alu -11 301 1 4419 243 91 52 chr9 7743859 7745837 -134525607 - L1ME2 LINE L1 -830 5316 3273 5930 138 11 18 chr9 7745853 7746752 -134524692 - L1MC1 LINE L1 0 6333 5438 1859 54 0 5 chr9 7746752 7747000 -134524444 - AluY SINE Alu 0 319 73 5930 138 11 18 chr9 7747000 7747054 -134524390 - L1MC1 LINE L1 -895 5438 5385 7055 48 0 9 chr9 7747054 7747910 -134523534 - L1PA5 LINE L1 0 6154 5307 403 285 145 5 chr9 7748011 7748204 -134523240 - L1MC4a LINE L1 -1058 6750 6531 2476 59 0 31 chr9 7748426 7748747 -134522697 - AluY SINE Alu 0 311 1 514 275 8 0 chr9 7748884 7749015 -134522429 - L1MC4a LINE L1 -1902 5906 5775 1066 293 157 5 chr9 7749225 7749666 -134521778 + MLT1L LTR MaLR 86 593 -22 195 42 0 0 chr9 7750169 7750193 -134521251 + (TC)n Simple_repeat Simple_repeat 2 25 0 727 172 19 51 chr9 7750550 7750707 -134520737 + MIR SINE MIR 101 252 -10 229 293 61 0 chr9 7753151 7753233 -134518211 - L3b LINE CR1 -246 1337 1251 204 125 0 0 chr9 7753275 7753307 -134518137 + (TC)n Simple_repeat Simple_repeat 1 32 0 757 235 15 67 chr9 7753320 7753588 -134517856 + L1MC4a LINE L1 5677 5930 -1878 227 304 36 43 chr9 7753638 7753776 -134517668 + HAL1 LINE L1 2357 2493 -14 631 77 0 0 chr9 7754491 7754569 -134516875 + MADE1 DNA Mariner 3 80 0 39640 83 6 7 chr9 7755692 7761848 -134509596 + L1PA6 LINE L1 5 6154 0 37 0 0 0 chr9 7761848 7761885 -134509559 + AT_rich Low_complexity Low_complexity 1 37 0 381 289 72 41 chr9 7761907 7762147 -134509297 + MLT1L LTR MaLR 110 341 -274 2083 145 0 6 chr9 7762147 7762458 -134508986 + AluSx SINE Alu 1 309 -3 381 289 72 41 chr9 7762458 7762609 -134508835 + MLT1L LTR MaLR 341 615 0 184 212 0 0 chr9 7762613 7762646 -134508798 - L2 LINE L2 -97 3216 3184 245 319 55 22 chr9 7763567 7763658 -134507786 + MIR SINE MIR 99 192 -70 204 410 40 29 chr9 7763905 7764078 -134507366 - L2 LINE L2 -16 3256 3082 271 322 144 8 chr9 7764584 7764702 -134506742 - L2 LINE L2 -1 3271 3138 297 68 0 0 chr9 7765919 7765963 -134505481 + (TAGA)n Simple_repeat Simple_repeat 2 45 0 4912 110 36 7 chr9 7766035 7766753 -134504691 + L1PA16 LINE L1 5417 6155 -11 321 125 0 0 chr9 7767823 7767879 -134503565 + (TC)n Simple_repeat Simple_repeat 1 56 0 333 240 165 8 chr9 7768182 7768303 -134503141 - L2 LINE L2 -214 3058 2919 234 255 59 0 chr9 7770365 7770416 -134501028 - MIR3 SINE MIR -52 156 103 200 242 0 32 chr9 7770822 7770884 -134500560 - MIR SINE MIR -6 256 197 814 263 137 26 chr9 7770991 7771379 -134500065 + MLT1J LTR MaLR 7 437 -74 274 208 218 20 chr9 7771460 7771561 -134499883 + MLT1J LTR MaLR 334 454 -57 1367 177 9 79 chr9 7772823 7773139 -134498305 + L1MB5 LINE L1 5881 6174 0 248 274 47 38 chr9 7773154 7773260 -134498184 + L3 LINE CR1 1265 1371 -206 357 267 114 28 chr9 7773276 7773452 -134497992 - MIR SINE MIR -12 250 60 1751 183 26 7 chr9 7773486 7773792 -134497652 - AluJb SINE Alu 0 312 1 180 111 0 0 chr9 7774194 7774221 -134497223 + (GGGA)n Simple_repeat Simple_repeat 4 30 0 1927 191 63 26 chr9 7774364 7774746 -134496698 - MSTD LTR MaLR 0 396 1 236 211 53 0 chr9 7775583 7775640 -134495804 - MLT1K LTR MaLR -7 581 522 370 278 35 0 chr9 7776498 7776613 -134494831 + MLT1L LTR MaLR 368 486 -129 649 341 60 30 chr9 7776713 7777366 -134494078 + L2 LINE L2 2628 3308 -5 241 219 37 0 chr9 7777371 7777453 -134493991 + G-rich Low_complexity Low_complexity 3 87 0 402 261 96 102 chr9 7777566 7777900 -134493544 - MLT1K LTR MaLR -247 341 10 1090 181 48 9 chr9 7778093 7778303 -134493141 + L1PB3 LINE L1 5936 6153 -1 361 277 43 116 chr9 7779755 7780084 -134491360 + L2 LINE L2 2966 3270 -2 288 0 0 0 chr9 7780637 7780669 -134490775 + (CA)n Simple_repeat Simple_repeat 2 33 0 2178 111 0 3 chr9 7781220 7781508 -134489936 + AluSx SINE Alu 11 297 -15 408 208 25 67 chr9 7781968 7782088 -134489356 + L1ME LINE L1 97 211 -5859 1053 277 88 71 chr9 7782153 7782607 -134488837 - MLT1G LTR MaLR -135 460 1 277 229 57 0 chr9 7782608 7782713 -134488731 + L1M4 LINE L1 3047 3157 -2989 9320 223 42 11 chr9 7782762 7784119 -134487325 + L1M4 LINE L1 2930 4394 -1752 2070 121 0 13 chr9 7784119 7784417 -134487027 + AluSc SINE Alu 1 294 -15 9320 223 42 11 chr9 7784417 7785450 -134485994 + L1M4 LINE L1 4394 5394 -752 1580 88 0 0 chr9 7785458 7785684 -134485760 + L1P LINE L1 5081 5306 -840 255 317 0 12 chr9 7785784 7785866 -134485578 - MIR SINE MIR -179 83 3 428 204 41 20 chr9 7786043 7786141 -134485303 - MIR3 SINE MIR -15 193 94 387 316 8 0 chr9 7787113 7787246 -134484198 + MIR SINE MIR 58 191 -71 1724 99 4 21 chr9 7787300 7787533 -134483911 - AluSp SINE Alu -11 302 74 200 132 0 26 chr9 7788442 7788480 -134482964 - MIR SINE MIR -109 153 117 511 250 8 0 chr9 7789356 7789488 -134481956 + L1MB7 LINE L1 6040 6172 -12 2521 76 0 0 chr9 7790242 7790546 -134480898 + AluY SINE Alu 1 304 -7 670 167 67 40 chr9 7790963 7791113 -134480331 + MIR SINE MIR 109 262 0 703 263 123 4 chr9 7791934 7792162 -134479282 - MIR SINE MIR 0 262 8 185 323 56 71 chr9 7792424 7792622 -134478822 - MIR SINE MIR -44 218 24 405 0 0 0 chr9 7793612 7793657 -134477787 + (CA)n Simple_repeat Simple_repeat 2 46 0 390 213 155 32 chr9 7795110 7795265 -134476179 - MIR3 SINE MIR -26 182 9 479 227 123 19 chr9 7795708 7795862 -134475582 - MIR SINE MIR -91 171 2 494 160 0 0 chr9 7796766 7796841 -134474603 - MSTD LTR MaLR -321 75 1 3163 154 11 71 chr9 7796845 7797351 -134474093 + MER6A DNA MER2_type 1 461 -404 1779 143 68 4 chr9 7797351 7797631 -134473813 - AluJo SINE Alu -14 298 1 3163 154 11 71 chr9 7797631 7797768 -134473676 + MER6A DNA MER2_type 461 605 0 769 215 70 0 chr9 7797842 7798000 -134473444 + MER45A DNA AcHobo 9 177 -1 589 225 198 22 chr9 7799236 7799549 -134471895 - MLT1J LTR MaLR -23 488 82 201 39 0 0 chr9 7899834 7899860 -134371584 + (CA)n Simple_repeat Simple_repeat 2 27 0 632 209 19 87 chr9 7900199 7900405 -134371039 - MER4C LTR ERV1 -1 464 273 * 1005 180 56 135 chr9 7900390 7900925 -134370519 - MER4A LTR ERV1 -165 432 1 2029 136 172 5 chr9 7901038 7901405 -134370039 + MSTA LTR MaLR 1 428 0 357 318 101 16 chr9 7901564 7901753 -134369691 + MIR SINE MIR 52 256 -6 2098 171 31 6 chr9 7903287 7903643 -134367801 + MLT1A1 LTR MaLR 1 365 0 195 289 19 0 chr9 7904173 7904225 -134367219 - L2 LINE L2 -1 3271 3219 211 254 104 0 chr9 7904236 7904303 -134367141 + MIR SINE MIR 125 198 -64 555 254 89 46 chr9 7905991 7906417 -134365027 + MLT1L LTR MaLR 126 614 -1 283 316 58 26 chr9 7906815 7907011 -134364433 - MIR SINE MIR -3 259 58 281 228 35 0 chr9 7907047 7907161 -134364283 + (TA)n Simple_repeat Simple_repeat 2 119 0 2262 98 3 0 chr9 7907826 7908113 -134363331 + AluSp SINE Alu 1 288 -25 238 224 0 26 chr9 7908134 7908210 -134363234 + L1MC5 LINE L1 7853 7926 -35 978 206 25 25 chr9 7908265 7908542 -134362902 - Charlie2a DNA MER1_type -1850 1012 736 827 214 291 40 chr9 7908543 7908684 -134362760 - Charlie2a DNA MER1_type -2308 474 370 2024 118 27 3 chr9 7908684 7908980 -134362464 + AluSx SINE Alu 1 303 -9 827 214 291 40 chr9 7908980 7909216 -134362228 - Charlie2a DNA MER1_type -2412 370 2 519 328 6 17 chr9 7909764 7909944 -134361500 + MIR3 SINE MIR 20 197 -11 476 281 98 58 chr9 7912043 7912267 -134359177 - MIR SINE MIR -26 236 4 234 302 0 0 chr9 7914209 7914272 -134357172 - MER5A DNA MER1_type -76 113 51 198 329 75 80 chr9 7914356 7914569 -134356875 + MIR SINE MIR 51 262 0 476 338 87 14 chr9 7915009 7915228 -134356216 + MIR SINE MIR 20 254 -8 410 261 113 20 chr9 7915331 7915526 -134355918 - MIR SINE MIR -48 214 2 210 171 0 0 chr9 7916243 7916284 -134355160 + (ATTG)n Simple_repeat Simple_repeat 2 42 0 477 292 52 7 chr9 7916286 7916440 -134355004 - MIR SINE MIR -7 255 95 612 292 82 26 chr9 7917227 7917460 -134353984 + MLT1H1 LTR MaLR 1 246 -309 258 218 64 0 chr9 7917498 7917576 -134353868 + MLT1H1 LTR MaLR 507 554 -1 467 230 164 24 chr9 7917755 7917920 -134353524 + MIR3 SINE MIR 21 208 0 225 266 28 73 chr9 7918217 7918326 -134353118 + MIR SINE MIR 81 184 -78 471 296 123 0 chr9 7918393 7918572 -134352872 - MIR SINE MIR -13 249 49 234 0 0 0 chr9 7918627 7918653 -134352791 + (TAA)n Simple_repeat Simple_repeat 2 27 0 1037 186 11 6 chr9 7918750 7918927 -134352517 - MER5B DNA MER1_type 0 178 1 317 276 43 17 chr9 7919965 7920081 -134351363 + LTR67 LTR ERVL 429 547 -10 2800 174 49 8 chr9 7920456 7920984 -134350460 - MER44D DNA MER2_type 0 605 1 375 312 55 0 chr9 7921474 7921583 -134349861 + MIR SINE MIR 28 142 -120 25 0 0 0 chr9 7921883 7921908 -134349536 + AT_rich Low_complexity Low_complexity 1 25 0 839 284 29 0 chr9 7922047 7922251 -134349193 + MER63A DNA MER1_type 1 210 0 370 227 40 80 chr9 7922314 7922464 -134348980 + L2 LINE L2 3160 3303 -10 2069 138 3 0 chr9 7923212 7923508 -134347936 - AluSx SINE Alu -13 299 3 189 205 0 0 chr9 7924201 7924240 -134347204 + MIR SINE MIR 158 196 -66 506 296 69 57 chr9 7924980 7925227 -134346217 + MIR SINE MIR 1 250 -12 728 218 18 41 chr9 7926602 7926822 -134344622 - L1MA7 LINE L1 -1 6290 6076 1983 161 70 6 chr9 7927312 7927654 -134343790 - MLT1A1 LTR MaLR -1 364 1 2691 26 7 0 chr9 7928722 7929030 -134342414 - AluY SINE Alu -1 310 1 250 239 30 0 chr9 7929095 7929162 -134342282 + (TA)n Simple_repeat Simple_repeat 1 69 0 214 216 27 0 chr9 7930448 7930522 -134340922 + CT-rich Low_complexity Low_complexity 2 77 0 242 283 54 0 chr9 7930901 7930993 -134340451 - MIR SINE MIR -70 192 96 233 342 149 0 chr9 7931567 7931681 -134339763 - MIR3 SINE MIR -63 145 15 972 169 19 5 chr9 7932532 7932739 -134338705 - L1MA7 LINE L1 -2 6289 6080 1124 151 27 28 chr9 7933034 7933252 -134338192 - L1PB1 LINE L1 -13 6153 5945 1433 122 10 0 chr9 7934270 7934475 -134336969 - L1PB1 LINE L1 0 6151 5945 258 308 65 19 chr9 7934495 7934602 -134336842 + MIR SINE MIR 61 172 -90 439 259 109 23 chr9 7934851 7935025 -134336419 - LTR67 LTR ERVL -13 544 356 305 325 19 57 chr9 7935176 7935333 -134336111 - LTR67 LTR ERVL -355 202 52 210 277 96 0 chr9 7935591 7935685 -134335759 - MIR SINE MIR -80 182 80 475 316 124 10 chr9 7935737 7935930 -134335514 + MIR SINE MIR 7 221 -41 232 200 12 129 chr9 7937500 7937554 -134333890 + MIR SINE MIR 105 147 -115 2262 77 7 0 chr9 7937554 7937840 -134333604 - AluSp SINE Alu -25 288 1 232 200 12 129 chr9 7937840 7937870 -134333574 + MIR SINE MIR 147 179 -83 2272 136 33 25 chr9 7937949 7938310 -134333134 + THE1B LTR MaLR 1 364 0 2522 62 0 7 chr9 7941436 7941745 -134329699 + AluY SINE Alu 1 307 -4 235 214 0 0 chr9 7942337 7942379 -134329065 + L2 LINE L2 3228 3269 -3 1073 90 8 0 chr9 7942987 7943121 -134328323 + AluSq/x SINE Alu 1 135 -177 1827 161 3 3 chr9 7943122 7943413 -134328031 + AluSx SINE Alu 1 291 -21 2683 162 54 35 chr9 7943565 7944140 -134327304 + L1MA7 LINE L1 5607 6192 -99 1725 171 0 51 chr9 7946880 7947196 -134324248 - AluJb SINE Alu -12 300 1 1317 282 44 12 chr9 7947818 7948300 -134323144 + Tigger8 DNA MER2_type 157 653 -13 279 259 16 77 chr9 7949019 7949174 -134322270 + L1ME LINE L1 5465 5605 -516 908 243 62 110 chr9 7949514 7949996 -134321448 + HAL1 LINE L1 16 474 -2033 1058 137 12 6 chr9 7949996 7950164 -134321280 + FRAM SINE Alu 1 169 -7 241 215 169 0 chr9 7950165 7950230 -134321214 + HAL1 LINE L1 466 541 -1966 1210 182 9 18 chr9 7950233 7950453 -134320991 + AluJo SINE Alu 73 290 -22 2625 227 116 136 chr9 7950467 7950896 -134320548 + HAL1 LINE L1 530 966 -1541 189 0 0 0 chr9 7950896 7950917 -134320527 + (TA)n Simple_repeat Simple_repeat 2 22 0 2625 227 116 136 chr9 7950917 7951369 -134320075 + HAL1 LINE L1 966 1426 -1081 764 160 82 82 chr9 7951369 7951483 -134319961 - MER58C DNA MER1_type -2212 208 95 483 18 0 0 chr9 7951483 7951539 -134319905 + (TTGG)n Simple_repeat Simple_repeat 4 59 0 764 160 82 82 chr9 7951539 7951606 -134319838 - MER58C DNA MER1_type -2325 95 24 2669 167 22 31 chr9 7951606 7952096 -134319348 + MER66B LTR ERV1 1 486 0 764 160 82 82 chr9 7952096 7952119 -134319325 - MER58C DNA MER1_type -2395 25 3 2625 227 116 136 chr9 7952119 7952955 -134318489 + HAL1 LINE L1 1426 2414 -93 299 243 40 0 chr9 7953419 7953493 -134317951 + LTR67 LTR ERVL 3 79 -478 2483 132 16 65 chr9 7953545 7953991 -134317453 - Tigger2a DNA MER2_type 0 434 11 329 314 0 8 chr9 7954043 7954164 -134317280 + LTR67 LTR ERVL 438 557 0 182 306 26 119 chr9 7955171 7955364 -134316080 - MIR SINE MIR -70 192 18 21 57 0 0 chr9 7955642 7955677 -134315767 + AT_rich Low_complexity Low_complexity 1 35 0 7236 221 82 19 chr9 7955799 7956067 -134315377 - L1M2 LINE L1 -4523 2686 2436 2083 124 3 0 chr9 7956067 7956378 -134315066 - AluSp SINE Alu 0 312 1 7236 221 82 19 chr9 7956378 7958578 -134312866 - L1M2 LINE L1 -4773 2436 1 199 283 67 0 chr9 7958735 7958795 -134312649 + L2 LINE L2 2191 2254 -1060 740 304 35 4 chr9 7959070 7959297 -134312147 + MIR SINE MIR 25 258 -4 304 286 8 40 chr9 7959733 7959859 -134311585 + GA-rich Low_complexity Low_complexity 3 124 0 377 247 62 84 chr9 7960604 7960782 -134310662 + HAL1 LINE L1 22 195 -2312 287 330 42 62 chr9 7961179 7961485 -134309959 + HAL1 LINE L1 706 1005 -1502 265 342 17 17 chr9 7962430 7962550 -134308894 + MIR SINE MIR 23 142 -120 2866 221 100 12 chr9 7964492 7965270 -134306174 - L1ME1 LINE L1 -3 6163 5317 241 235 15 15 chr9 7966033 7966101 -134305343 + MLT1K LTR MaLR 179 246 -342 2064 160 0 0 chr9 7966438 7966744 -134304700 + AluJo SINE Alu 1 306 -6 232 333 8 79 chr9 7966962 7967088 -134304356 - L3 LINE CR1 -3 1574 1458 389 355 33 16 chr9 7968134 7968376 -134303068 - MIR SINE MIR -14 248 3 404 258 116 37 chr9 7969494 7969684 -134301760 + MIR SINE MIR 56 260 -2 2111 221 61 17 chr9 7970578 7971052 -134300392 + MLT1F LTR MaLR 1 495 -47 2060 221 31 48 chr9 7971053 7971574 -134299870 - LTR40a LTR ERVL 0 519 8 262 235 0 0 chr9 7971580 7971631 -134299813 + MLT1F LTR MaLR 492 542 0 351 276 95 0 chr9 7972650 7972766 -134298678 + MIR SINE MIR 124 250 -12 555 163 0 0 chr9 7972771 7972863 -134298581 - AluJ/FRAM SINE Alu 0 312 221 1521 263 50 19 chr9 7973516 7973992 -134297452 + LTR16C LTR ERVL 1 491 0 345 329 96 0 chr9 7974138 7974284 -134297160 - MIR SINE MIR -66 196 37 1016 251 140 40 chr9 7974375 7974946 -134296498 + L2 LINE L2 2698 3308 -5 329 243 162 0 chr9 7975512 7975648 -134295796 - L1ME4a LINE L1 -3 6118 5961 1046 110 6 0 chr9 7975729 7975893 -134295551 + (TTTCC)n Simple_repeat Simple_repeat 2 166 0 1708 169 22 0 chr9 7975893 7976166 -134295278 - AluJb SINE Alu -33 279 1 272 275 11 0 chr9 7976308 7976399 -134295045 - HsTC2 DNA Tc2 -1007 891 800 482 134 0 0 chr9 7976435 7976502 -134294942 + Tigger2 DNA MER2_type 1 67 -2651 * 570 143 0 10 chr9 7976488 7976586 -134294858 + Tigger2 DNA MER2_type 2267 2363 -355 226 103 0 0 chr9 7976583 7976612 -134294832 + Tigger2 DNA MER2_type 2680 2708 -10 * 648 260 87 5 chr9 7976616 7976824 -134294620 - HsTC2 DNA Tc2 -1138 760 536 336 276 33 59 chr9 7976826 7976978 -134294466 - HsTC2 DNA Tc2 -1750 148 1 21 0 0 0 chr9 7977127 7977148 -134294296 + AT_rich Low_complexity Low_complexity 1 21 0 510 271 25 30 chr9 7977895 7978030 -134293414 - L1ME4a LINE L1 -162 5959 5824 2153 132 47 44 chr9 7978030 7978393 -134293051 + THE1B LTR MaLR 1 364 0 510 271 25 30 chr9 7978393 7978456 -134292988 - L1ME4a LINE L1 -297 5824 5762 2451 68 0 0 chr9 7978945 7979239 -134292205 + AluY SINE Alu 1 294 -17 381 197 13 0 chr9 7980048 7980124 -134291320 + MER58 DNA MER1_type 2343 2419 -1 234 258 33 67 chr9 7980932 7981052 -134290392 - L1MC4 LINE L1 -116 7926 7811 295 271 21 21 chr9 7981181 7981277 -134290167 - L1MC4 LINE L1 -368 7674 7579 2531 230 17 35 chr9 7981295 7981930 -134289514 - L1ME1 LINE L1 -4 6162 5539 253 220 68 0 chr9 7981973 7982032 -134289412 - L1ME LINE L1 -6002 68 6 234 307 53 0 chr9 7982105 7982180 -134289264 - MIR3 SINE MIR -14 194 116 346 236 42 0 chr9 7982203 7982275 -134289169 - L2 LINE L2 -4 3268 3194 294 254 0 0 chr9 7983674 7983741 -134287703 + MIR3 SINE MIR 137 203 -5 27 49 0 0 chr9 7984430 7984471 -134286973 + AT_rich Low_complexity Low_complexity 1 41 0 632 255 21 32 chr9 7984660 7984848 -134286596 + MIR SINE MIR 2 187 -75 23 33 0 0 chr9 7987182 7987212 -134284232 + AT_rich Low_complexity Low_complexity 1 30 0 431 193 0 23 chr9 7988157 7988245 -134283199 + MIR SINE MIR 174 259 -3 189 0 0 0 chr9 7988552 7988573 -134282871 + (CA)n Simple_repeat Simple_repeat 1 21 0 216 111 0 0 chr9 7989987 7990023 -134281421 + (CA)n Simple_repeat Simple_repeat 1 36 0 1323 261 68 38 chr9 7990386 7990857 -134280587 + LTR16C LTR ERVL 1 485 -6 203 316 52 44 chr9 7991069 7991126 -134280318 + L2 LINE L2 3171 3226 -87 2622 52 7 0 chr9 7991126 7991435 -134280009 - AluY SINE Alu 0 311 1 203 316 52 44 chr9 7991435 7991513 -134279931 + L2 LINE L2 3226 3307 -6 1629 169 96 37 chr9 7992400 7992754 -134278690 + THE1C LTR MaLR 1 375 0 1030 273 101 21 chr9 7994128 7994505 -134276939 - MLT1I LTR MaLR -2 407 1 2559 65 0 0 chr9 7994547 7994856 -134276588 + AluY SINE Alu 3 311 0 382 294 48 14 chr9 7994990 7995166 -134276278 + MIR SINE MIR 42 221 -41 261 244 142 47 chr9 7995763 7995890 -134275554 + Charlie8 DNA MER1_type 87 225 -2192 259 306 102 23 chr9 7996297 7996455 -134274989 - MIR SINE MIR -63 145 1 198 333 0 26 chr9 7996714 7996792 -134274652 + L2 LINE L2 3197 3272 0 359 297 40 14 chr9 7997628 7997904 -134273540 - L1MDb LINE L1 -5023 1921 1639 7993 170 8 9 chr9 7997929 8000136 -134271308 + L1PA14 LINE L1 3923 6149 -12 24 0 0 0 chr9 8000138 8000162 -134271282 + AT_rich Low_complexity Low_complexity 1 24 0 343 231 27 150 chr9 8000238 8000498 -134270946 - L1MDb LINE L1 -5082 1341 1114 810 314 47 38 chr9 8000814 8001266 -134270178 - L1MDb LINE L1 -5944 479 24 324 290 43 48 chr9 8001269 8001476 -134269968 - L1ME LINE L1 -307 5814 5609 * 424 169 7 115 chr9 8001472 8001620 -134269824 + L1ME3A LINE L1 6017 6148 -22 24 0 0 0 chr9 8001715 8001739 -134269705 + AT_rich Low_complexity Low_complexity 1 24 0 366 331 44 7 chr9 8002995 8003131 -134268313 - MIR3 SINE MIR -23 185 45 1474 194 55 73 chr9 8003195 8003576 -134267868 - MLT1A2 LTR MaLR 0 374 1 5805 129 40 2 chr9 8004361 8005893 -134265551 + L1PA15 LINE L1 4594 6159 -6 2545 74 0 0 chr9 8006333 8006644 -134264800 + AluY SINE Alu 1 311 0 4797 118 43 3 chr9 8006814 8007515 -134263929 - L1PA16 LINE L1 -9 6472 5744 3088 220 126 12 chr9 8007516 8007528 -134263916 - L1PA16 LINE L1 -813 5648 5639 2141 104 27 7 chr9 8007528 8007827 -134263617 - AluSx SINE Alu -7 305 1 3088 220 126 12 chr9 8007827 8008741 -134262703 - L1PA16 LINE L1 -822 5639 4616 * 11503 152 20 20 chr9 8008729 8010056 -134261388 - L1MA3 LINE L1 -2 7722 6397 2542 48 0 10 chr9 8010056 8010368 -134261076 - AluY SINE Alu 0 311 3 11503 152 20 20 chr9 8010368 8012233 -134259211 - L1MA3 LINE L1 -1327 6397 4527 750 129 0 0 chr9 8012249 8012365 -134259079 - L1PA16 LINE L1 -1829 4632 4517 * 4388 129 2 8 chr9 8012363 8013005 -134258439 - L1PA16 LINE L1 -4757 1118 481 1817 167 69 3 chr9 8013009 8013326 -134258118 - L1PA16 LINE L1 -5536 339 2 20213 160 32 24 chr9 8013326 8016948 -134254496 - L1MA3 LINE L1 -3898 3667 16 3327 199 45 8 chr9 8016954 8017663 -134253781 - L1 LINE L1 -1817 4329 3595 * 12312 191 33 20 chr9 8017632 8020805 -134250639 - L1PA15-16 LINE L1 -3368 3481 716 2366 161 97 11 chr9 8020819 8021273 -134250171 - LTR49 LTR ERV1 -102 493 1 3110 77 41 10 chr9 8021598 8022015 -134249429 - L1PA11 LINE L1 -2 6172 5743 320 261 109 0 chr9 8022565 8022657 -134248787 + MIR SINE MIR 156 257 -5 3092 196 56 59 chr9 8023154 8023883 -134247561 - LTR8A LTR ERV1 0 727 1 349 262 10 48 chr9 8025351 8025454 -134245990 + MIR SINE MIR 9 107 -155 1364 315 118 29 chr9 8026106 8026816 -134244628 + HERVL LTR ERVL 2937 3725 -1929 2850 7 0 0 chr9 8026816 8027120 -134244324 + AluYb8 SINE Alu 1 304 -14 1364 315 118 29 chr9 8027120 8027199 -134244245 + HERVL LTR ERVL 3725 3796 -1858 1542 331 43 50 chr9 8027281 8028274 -134243170 + HERVL LTR ERVL 4050 5035 -729 1023 231 51 121 chr9 8028655 8029057 -134242387 + LTR16C LTR ERVL 1 357 -134 2769 117 6 80 chr9 8029057 8029546 -134241898 - MLT2A2 LTR ERVL 0 453 1 1023 231 51 121 chr9 8029546 8029673 -134241771 + LTR16C LTR ERVL 357 491 0 701 240 34 43 chr9 8029832 8030040 -134241404 - MER58C DNA MER1_type 0 215 10 2562 46 3 0 chr9 8031690 8031997 -134239447 + AluY SINE Alu 1 308 -3 180 0 0 0 chr9 8031997 8032017 -134239427 + (TA)n Simple_repeat Simple_repeat 2 21 0 336 355 51 0 chr9 8032055 8032193 -134239251 + L2 LINE L2 2917 3061 -211 1245 216 42 45 chr9 8032193 8032615 -134238829 - MER66A LTR ERV1 0 525 165 389 295 85 123 chr9 8032835 8033177 -134238267 + MER102b DNA MER1_type 13 341 0 2240 110 0 0 chr9 8033361 8033651 -134237793 - AluSx SINE Alu -22 290 1 218 246 18 18 chr9 8033786 8033843 -134237601 + L2 LINE L2 3179 3235 -78 240 35 0 0 chr9 8033890 8033919 -134237525 + (TA)n Simple_repeat Simple_repeat 2 30 0 228 35 0 0 chr9 8033918 8033947 -134237497 + (TG)n Simple_repeat Simple_repeat 2 30 0 * 1166 148 0 48 chr9 8033953 8034182 -134237262 - L1PA16 LINE L1 -9 6157 5940 827 211 54 66 chr9 8034592 8034834 -134236610 + MER8 DNA MER2_type 1 239 0 331 370 126 38 chr9 8035312 8035709 -134235735 - L2 LINE L2 0 3272 2841 334 153 64 38 chr9 8036090 8036199 -134235245 + MER45C DNA AcHobo 82 195 -758 1254 285 76 12 chr9 8036317 8036815 -134234629 + MER45C DNA AcHobo 424 953 0 259 316 0 0 chr9 8037050 8037126 -134234318 + GA-rich Low_complexity Low_complexity 2 77 0 2722 126 7 2 chr9 8038189 8038617 -134232827 - L1PA16 LINE L1 -9 6157 5728 404 297 89 50 chr9 8039152 8039354 -134232090 - MIR SINE MIR -19 243 34 2085 148 0 0 chr9 8039767 8040065 -134231379 + AluSx SINE Alu 3 300 -12 398 249 66 76 chr9 8041119 8041305 -134230139 - MLT1J2 LTR MaLR -6 440 254 241 272 169 7 chr9 8041400 8041536 -134229908 - MLT1J LTR MaLR -346 165 8 348 302 52 0 chr9 8041634 8041750 -134229694 + MIR SINE MIR 141 262 0 28 48 0 0 chr9 8041831 8041873 -134229571 + AT_rich Low_complexity Low_complexity 1 42 0 978 219 25 5 chr9 8042033 8042234 -134229210 - MER58A DNA MER1_type 0 224 20 348 283 87 36 chr9 8042310 8042448 -134228996 - MIR SINE MIR -112 150 6 509 223 0 6 chr9 8044773 8044930 -134226514 + (TA)n Simple_repeat Simple_repeat 1 156 0 259 143 0 0 chr9 8044930 8044972 -134226472 + (TG)n Simple_repeat Simple_repeat 2 43 0 393 248 46 0 chr9 8045036 8045145 -134226299 - MER94 DNA DNA -20 114 1 751 274 139 49 chr9 8046182 8047222 -134224222 + L1MEd LINE L1 599 1831 -745 21 57 0 0 chr9 8047801 8047836 -134223608 + AT_rich Low_complexity Low_complexity 1 35 0 306 344 62 10 chr9 8047938 8048133 -134223311 + L1MEd LINE L1 2033 2237 -4159 510 272 37 28 chr9 8048862 8049079 -134222365 + MLT1J LTR MaLR 293 511 0 434 296 25 49 chr9 8049169 8049331 -134222113 - MIR SINE MIR -73 189 32 892 219 12 0 chr9 8049877 8050046 -134221398 - MER5A DNA MER1_type -2 187 17 199 288 0 34 chr9 8050116 8050175 -134221269 - MIR SINE MIR -90 118 62 189 87 43 22 chr9 8050299 8050345 -134221099 + (CATATA)n Simple_repeat Simple_repeat 2 48 0 1194 215 98 0 chr9 8050728 8051035 -134220409 - MER58B DNA MER1_type 0 341 5 415 266 113 83 chr9 8051195 8051567 -134219877 + L1ME LINE L1 5413 5795 -326 196 250 62 16 chr9 8052653 8052717 -134218727 - MIR3 SINE MIR 0 208 142 208 195 0 172 chr9 8052903 8052990 -134218454 - MIR3 SINE MIR -22 186 115 432 321 85 66 chr9 8054810 8055115 -134216329 - L2 LINE L2 -4 3268 2958 2864 96 69 5 chr9 8056223 8056660 -134214784 - MER4C LTR ERV1 0 465 1 214 303 111 0 chr9 8056758 8056857 -134214587 - MIR SINE MIR -78 184 75 284 306 20 61 chr9 8058360 8058507 -134212937 - L2 LINE L2 0 3313 3173 527 154 107 13 chr9 8059406 8059555 -134211889 + MER53 DNA DNA 1 163 -26 228 67 0 0 chr9 8059565 8059595 -134211849 + (TG)n Simple_repeat Simple_repeat 1 30 0 1639 199 3 3 chr9 8059608 8059890 -134211554 - AluJb SINE Alu -30 282 1 244 232 116 11 chr9 8060268 8060363 -134211081 + MIR SINE MIR 81 185 -77 249 235 76 59 chr9 8060788 8060907 -134210537 - LTR26 LTR ERV1 -16 587 467 858 227 10 141 chr9 8060917 8061335 -134210109 - LTR8A LTR ERV1 -328 399 37 1174 120 0 6 chr9 8062025 8062192 -134209252 + AluSg/x SINE Alu 126 291 -21 955 192 34 14 chr9 8062766 8062974 -134208470 - MER20 DNA MER1_type -7 212 1 406 299 32 32 chr9 8064868 8065025 -134206419 - MIR SINE MIR -86 176 20 361 316 54 6 chr9 8065650 8065818 -134205626 + MIR SINE MIR 35 210 -52 306 373 68 43 chr9 8065850 8066172 -134205272 - L2 LINE L2 -8 3264 2935 530 289 59 21 chr9 8067693 8067880 -134203564 + MIR SINE MIR 20 213 -49 318 244 209 0 chr9 8068219 8068334 -134203110 + MIR SINE MIR 60 198 -64 728 277 67 9 chr9 8068353 8068577 -134202867 - MIR SINE MIR -6 256 20 11671 121 19 2 chr9 8068577 8069954 -134201490 + L1PA10 LINE L1 3514 4928 -1240 1873 157 29 0 chr9 8069954 8070235 -134201209 - AluSx SINE Alu -20 292 4 11671 121 19 2 chr9 8070235 8071498 -134199946 + L1PA10 LINE L1 4928 6168 0 676 191 137 12 chr9 8071520 8071541 -134199903 + MER5A DNA MER1_type 1 18 -171 198 71 0 0 chr9 8071541 8071569 -134199875 + (CAG)n Simple_repeat Simple_repeat 2 29 0 676 191 137 12 chr9 8071569 8071715 -134199729 + MER5A DNA MER1_type 18 189 0 404 245 0 0 chr9 8071745 8071843 -134199601 + MER58A DNA MER1_type 42 139 0 337 164 30 0 chr9 8071889 8071956 -134199488 + MER58A DNA MER1_type 152 220 -4 244 268 18 18 chr9 8071979 8072035 -134199409 + L2 LINE L2 3210 3265 -7 1887 168 0 10 chr9 8072752 8073055 -134198389 - AluJb SINE Alu -12 300 1 552 292 13 72 chr9 8073218 8073288 -134198156 - LTR33 LTR ERVL -7 514 441 658 216 94 53 chr9 8073288 8073342 -134198102 - MER45A DNA AcHobo -1403 178 128 1678 189 30 7 chr9 8073342 8073643 -134197801 + AluJb SINE Alu 1 308 -4 658 216 94 53 chr9 8073643 8073759 -134197685 - MER45A DNA AcHobo -1453 128 1 552 292 13 72 chr9 8073759 8073924 -134197520 - LTR33 LTR ERVL -80 441 293 283 237 260 0 chr9 8073961 8074134 -134197310 - LTR33 LTR ERVL -300 221 4 1170 220 41 89 chr9 8074425 8074816 -134196628 + MLT1A2 LTR MaLR 3 374 0 185 176 0 0 chr9 8075007 8075041 -134196403 + MIR SINE MIR 106 139 -69 217 326 88 48 chr9 8076032 8076179 -134195265 + L2 LINE L2 2824 2976 -296 240 245 0 0 chr9 8076345 8076394 -134195050 + L2 LINE L2 3222 3270 -2 487 279 118 49 chr9 8076454 8076820 -134194624 - MLT1K LTR MaLR -11 577 187 1158 252 82 52 chr9 8078103 8078674 -134192770 - HsTC2a DNA Tc2 -129 615 28 349 276 92 23 chr9 8078680 8078854 -134192590 - MIR3 SINE MIR -9 199 14 2111 100 0 33 chr9 8079093 8079394 -134192050 + AluY SINE Alu 1 291 -20 216 0 0 0 chr9 8079426 8079450 -134191994 + (TC)n Simple_repeat Simple_repeat 1 24 0 1914 130 0 43 chr9 8081133 8081432 -134190012 - AluSq SINE Alu -27 286 1 2163 241 35 25 chr9 8081432 8081594 -134189850 + MER99 DNA DNA 16 175 -653 2238 85 3 3 chr9 8081594 8081889 -134189555 + AluSg SINE Alu 1 295 -15 2163 241 35 25 chr9 8081889 8082377 -134189067 + MER99 DNA DNA 175 673 -155 5051 181 67 8 chr9 8082383 8083832 -134187612 - L1 LINE L1 -2660 4905 3361 779 222 18 0 chr9 8083835 8084002 -134187442 + MER99 DNA DNA 659 828 0 258 346 0 20 chr9 8086492 8086593 -134184851 - MIR SINE MIR -78 130 32 325 284 166 24 chr9 8086805 8086974 -134184470 - MIR3 SINE MIR -13 195 3 239 343 24 21 chr9 8087586 8087726 -134183718 - MIR SINE MIR -57 151 12 258 320 109 32 chr9 8088396 8088552 -134182892 + MIR SINE MIR 81 248 -14 379 252 91 42 chr9 8090340 8090483 -134180961 - L2 LINE L2 -5 3308 3159 821 267 33 11 chr9 8090484 8090757 -134180687 - LTR16C LTR ERVL 0 491 213 1376 289 64 24 chr9 8090969 8091598 -134179846 - L2 LINE L2 -167 3146 2124 306 274 0 0 chr9 8091606 8091668 -134179776 + MER2 DNA MER2_type 13 74 -271 233 276 52 0 chr9 8092487 8092545 -134178899 + MIR SINE MIR 116 176 -86 339 271 100 87 chr9 8093193 8093422 -134178022 + MIR SINE MIR 7 238 -24 522 308 50 16 chr9 8095184 8095366 -134176078 + MIR3 SINE MIR 12 199 -9 252 250 62 38 chr9 8097882 8097962 -134173482 - L2 LINE L2 0 3313 3232 547 273 44 0 chr9 8099337 8099492 -134171952 + MIR3 SINE MIR 34 198 -10 252 311 46 53 chr9 8099492 8099643 -134171801 + MIR SINE MIR 63 212 -50 246 303 76 43 chr9 8100902 8101084 -134170360 + MIR SINE MIR 37 221 -41 735 249 48 40 chr9 8101537 8101786 -134169658 - MIR SINE MIR 0 262 12 325 162 40 14 chr9 8101801 8101875 -134169569 - MER69 DNA AcHobo -15 2511 2436 429 318 56 47 chr9 8102390 8102623 -134168821 + MIR SINE MIR 2 236 -26 299 252 229 0 chr9 8103296 8103427 -134168017 + MIR SINE MIR 102 262 0 263 206 15 0 chr9 8103533 8103601 -134167843 + MER103 DNA DNA 87 155 -11 503 319 100 11 chr9 8103975 8104335 -134167109 + MLT1J2 LTR MaLR 59 450 0 2339 72 3 3 chr9 8104389 8104682 -134166762 - AluSg SINE Alu -17 293 1 278 158 88 18 chr9 8105499 8105556 -134165888 + L2 LINE L2 3253 3313 0 219 310 0 14 chr9 8105564 8105635 -134165809 - L2 LINE L2 -528 2786 2717 354 244 37 0 chr9 8106961 8107043 -134164401 + LTR33 LTR ERVL 48 132 -389 * 506 295 70 27 chr9 8107033 8107291 -134164153 + LTR33 LTR ERVL 235 503 -18 295 293 69 0 chr9 8107884 8108000 -134163444 - MIR SINE MIR -48 214 91 561 281 9 18 chr9 8108514 8108726 -134162718 - MLT1H LTR MaLR -202 215 29 511 224 179 34 chr9 8110876 8111055 -134160389 - MER3 DNA MER1_type 0 209 5 2378 236 71 35 chr9 8111609 8112587 -134158857 - L1MC4 LINE L1 -258 7784 6772 357 247 13 0 chr9 8112588 8112665 -134158779 - MLT1G1 LTR MaLR -80 515 438 961 176 150 50 chr9 8112673 8113013 -134158431 - MLT1A2 LTR MaLR 0 374 1 423 311 71 40 chr9 8113083 8115308 -134156136 - L1M4 LINE L1 -1684 4462 2170 1808 163 20 7 chr9 8115316 8115611 -134155833 + AluJb SINE Alu 1 299 -13 631 336 52 40 chr9 8115922 8116327 -134155117 - HAL1b LINE L1 -549 799 390 297 0 0 0 chr9 8116465 8116498 -134154946 + (CA)n Simple_repeat Simple_repeat 2 34 0 2280 122 3 6 chr9 8116639 8116991 -134154453 + L1PA8A LINE L1 5781 6131 0 1449 257 27 38 chr9 8116992 8117443 -134154001 - MLT2B1 LTR ERVL -74 446 1 2113 104 0 14 chr9 8117720 8118000 -134153444 - AluSx SINE Alu -36 276 1 840 242 0 10 chr9 8118048 8118242 -134153202 + MER20 DNA MER1_type 28 219 0 431 283 62 36 chr9 8119270 8119436 -134152008 + MER20B DNA MER1_type 45 214 -5 346 333 70 9 chr9 8119451 8119565 -134151879 - MIR SINE MIR -55 153 33 24 0 0 0 chr9 8119763 8119787 -134151657 + AT_rich Low_complexity Low_complexity 1 24 0 275 273 30 0 chr9 8120460 8120526 -134150918 - L2 LINE L2 -1 3312 3245 215 236 36 18 chr9 8120704 8120759 -134150685 - L2 LINE L2 -68 3245 3190 186 236 18 55 chr9 8120808 8120863 -134150581 + MIR SINE MIR 203 255 -7 6553 148 107 17 chr9 8121077 8126430 -134145014 - L1PA8A LINE L1 -319 6127 130 375 105 53 53 chr9 8126431 8126507 -134144937 + MLT2C2 LTR ERVL 389 464 0 418 274 0 0 chr9 8126540 8126635 -134144809 + MIR SINE MIR 84 178 -84 1131 159 5 10 chr9 8127777 8127984 -134143460 + MER2 DNA MER2_type 1 206 -139 227 79 26 0 chr9 8127990 8128028 -134143416 + (TA)n Simple_repeat Simple_repeat 1 39 0 293 277 0 0 chr9 8128034 8128099 -134143345 + MER2 DNA MER2_type 281 345 0 281 250 69 17 chr9 8128257 8128373 -134143071 - MER103 DNA DNA -44 122 1 621 350 64 0 chr9 8128690 8128910 -134142534 + MIR SINE MIR 19 252 -10 453 287 130 14 chr9 8129065 8129288 -134142156 + L2 LINE L2 2811 3059 -254 349 291 87 10 chr9 8129728 8129846 -134141598 - MIR SINE MIR -85 123 21 432 335 58 15 chr9 8130086 8130304 -134141140 + MIR SINE MIR 2 226 -36 305 316 59 37 chr9 8131335 8131471 -134139973 - L2 LINE L2 0 3272 3134 236 389 47 7 chr9 8132189 8132338 -134139106 - L2 LINE L2 -529 2785 2631 646 275 99 30 chr9 8132367 8132793 -134138651 + LTR16A LTR ERVL 3 450 0 360 289 125 19 chr9 8134311 8134519 -134136925 - MIR SINE MIR -4 258 29 248 246 16 0 chr9 8134759 8134820 -134136624 + (CAT)n Simple_repeat Simple_repeat 1 62 0 182 300 117 58 chr9 8136546 8136973 -134134471 + L2 LINE L2 1965 2416 -898 685 284 24 0 chr9 8137058 8137227 -134134217 - MIR SINE MIR -88 174 2 570 320 40 18 chr9 8137549 8137746 -134133698 - MIR SINE MIR -16 246 42 4483 79 7 2 chr9 8137746 8138351 -134133093 + L1PA8A LINE L1 5522 6129 -2 570 320 40 18 chr9 8138351 8138375 -134133069 - MIR SINE MIR -220 42 20 1001 230 168 10 chr9 8139438 8139747 -134131697 - MLT1A2 LTR MaLR -16 358 1 381 329 82 6 chr9 8139822 8139992 -134131452 - MIR SINE MIR -59 203 21 1026 231 14 5 chr9 8139997 8140218 -134131226 + MER58A DNA MER1_type 2 224 0 219 319 43 74 chr9 8141303 8141466 -134129978 + MIR SINE MIR 11 168 -94 375 311 196 5 chr9 8142016 8142225 -134129219 - MIR SINE MIR -12 250 2 384 295 74 65 chr9 8142617 8142755 -134128689 - L2 LINE L2 0 3313 3178 2309 116 0 7 chr9 8142755 8143065 -134128379 + AluSc SINE Alu 1 308 -1 384 295 74 65 chr9 8143065 8143251 -134128193 - L2 LINE L2 -135 3178 2985 690 288 65 92 chr9 8143785 8144168 -134127276 + L1MEd LINE L1 781 1182 -5064 276 30 0 0 chr9 8144168 8144201 -134127243 + (CA)n Simple_repeat Simple_repeat 2 34 0 690 288 65 92 chr9 8144201 8144399 -134127045 + L1MEd LINE L1 1182 1384 -4862 297 0 0 0 chr9 8145095 8145128 -134126316 + (A)n Simple_repeat Simple_repeat 1 33 0 1977 134 46 11 chr9 8145457 8145823 -134125621 + MLT1B LTR MaLR 9 387 -3 260 304 47 27 chr9 8146015 8146163 -134125281 - L2 LINE L2 -815 2499 2349 231 204 0 0 chr9 8148114 8148168 -134123276 + (CA)n Simple_repeat Simple_repeat 2 55 0 1705 189 78 44 chr9 8148508 8148959 -134122485 + MER31B LTR ERV1 1 466 0 369 280 0 0 chr9 8149632 8149725 -134121719 - MER96 DNA MER1_type? 0 175 83 708 294 74 9 chr9 8150439 8150670 -134120774 - MIR SINE MIR -11 251 6 828 246 33 48 chr9 8150851 8151226 -134120218 - L1MD3 LINE L1 0 8042 7687 226 262 0 19 chr9 8151249 8151352 -134120092 + CT-rich Low_complexity Low_complexity 2 102 0 1824 149 58 22 chr9 8151400 8151762 -134119682 + THE1C LTR MaLR 1 375 0 416 255 21 27 chr9 8153212 8153343 -134118101 + MIR SINE MIR 2 134 -74 276 77 0 0 chr9 8154120 8154159 -134117285 + (TG)n Simple_repeat Simple_repeat 2 40 0 239 349 211 0 chr9 8154223 8154441 -134117003 + L2 LINE L2 2641 2904 -410 800 334 85 42 chr9 8154812 8155751 -134115693 + L2 LINE L2 2304 3294 -19 28 29 0 0 chr9 8156667 8156702 -134114742 + AT_rich Low_complexity Low_complexity 1 35 0 907 142 15 0 chr9 8156856 8156990 -134114454 - AluJo SINE Alu -176 136 1 258 250 12 12 chr9 8158727 8158807 -134112637 + MER112 DNA MER1_type 179 258 -2 14877 94 10 10 chr9 8160367 8163383 -134108061 - L1PA8 LINE L1 0 6172 3159 313 288 142 59 chr9 8163805 8164024 -134107420 - L2 LINE L2 0 3313 3077 360 341 49 9 chr9 8164231 8164454 -134106990 - L2 LINE L2 -799 2515 2284 757 175 6 79 chr9 8164470 8164647 -134106797 - MER58A DNA MER1_type -29 195 32 23 33 0 0 chr9 8164895 8164925 -134106519 + AT_rich Low_complexity Low_complexity 1 30 0 198 336 18 62 chr9 8165613 8165726 -134105718 - MIR SINE MIR -59 149 42 216 302 43 86 chr9 8166063 8166179 -134105265 - L2 LINE L2 -15 3257 3147 255 313 15 61 chr9 8166305 8166436 -134105008 + L2 LINE L2 3183 3307 -6 1871 222 49 22 chr9 8166772 8167262 -134104182 + MER87 LTR ERV1 33 535 -6 1404 225 30 35 chr9 8167550 8167919 -134103525 + MLT1A2 LTR MaLR 6 372 -2 374 236 0 22 chr9 8167904 8167993 -134103451 + MER21B LTR ERV1 1 87 -776 * 238 125 62 21 chr9 8168049 8168097 -134103347 + MER21B LTR ERV1 98 147 -716 2481 161 36 78 chr9 8168317 8168871 -134102573 - LTR26B LTR ERV1 0 531 1 2272 86 0 0 chr9 8168919 8169198 -134102246 - AluY SINE Alu -32 279 1 286 284 84 63 chr9 8169427 8169617 -134101827 + MER117 DNA MER1_type 4 197 0 207 111 0 28 chr9 8169642 8169678 -134101766 + (TTTA)n Simple_repeat Simple_repeat 2 36 0 411 285 43 38 chr9 8170255 8170441 -134101003 - MIR3 SINE MIR -3 205 19 1156 196 30 121 chr9 8170617 8171046 -134100398 - MLT2D LTR ERVL -24 390 1 2106 91 66 0 chr9 8172182 8172469 -134098975 - AluY SINE Alu -5 306 1 21 0 0 0 chr9 8172680 8172701 -134098743 + AT_rich Low_complexity Low_complexity 1 21 0 2871 100 83 21 chr9 8172711 8173191 -134098253 - MER9 LTR ERVK -1 510 1 40 0 0 0 chr9 8173338 8173378 -134098066 + AT_rich Low_complexity Low_complexity 1 40 0 272 307 45 23 chr9 8174496 8174584 -134096860 - MIR SINE MIR -89 119 30 23 0 0 0 chr9 8175207 8175230 -134096214 + AT_rich Low_complexity Low_complexity 1 23 0 222 290 54 54 chr9 8175260 8175353 -134096091 - MIR SINE MIR -97 111 19 252 0 0 0 chr9 8175360 8175388 -134096056 + (TG)n Simple_repeat Simple_repeat 2 29 0 340 336 36 0 chr9 8175475 8175615 -134095829 + MIR SINE MIR 112 256 -6 773 176 22 60 chr9 8175700 8175882 -134095562 - MER5B DNA MER1_type 0 178 4 398 270 0 0 chr9 8176248 8176337 -134095107 - L2 LINE L2 0 3272 3184 976 201 54 0 chr9 8177357 8177561 -134093883 - MER20 DNA MER1_type 0 219 5 324 0 0 0 chr9 8177872 8177908 -134093536 + (CA)n Simple_repeat Simple_repeat 2 37 0 245 294 15 0 chr9 8177973 8178041 -134093403 + MIR SINE MIR 71 139 -123 216 0 0 0 chr9 8178041 8178065 -134093379 + (CAT)n Simple_repeat Simple_repeat 2 25 0 622 275 60 63 chr9 8178113 8178477 -134092967 + L1MB1 LINE L1 413 775 -5528 1626 243 47 56 chr9 8178928 8179012 -134092432 + L1MB1 LINE L1 801 884 -5429 2457 136 0 8 chr9 8179012 8179388 -134092056 + THE1C LTR MaLR 1 373 -2 1626 243 47 56 chr9 8179388 8180224 -134091220 + L1MB1 LINE L1 884 1793 -4520 * 3458 232 27 7 chr9 8180213 8181204 -134090240 - L1 LINE L1 -2369 3777 2767 4980 169 30 13 chr9 8181206 8182915 -134088529 + L1PA16 LINE L1 4105 5833 -333 1059 85 0 0 chr9 8182916 8183045 -134088399 + AluSg SINE Alu 5 133 -177 2369 101 7 0 chr9 8183045 8183351 -134088093 + AluSg SINE Alu 1 308 -2 1580 156 25 54 chr9 8183352 8183705 -134087739 + L1PA16 LINE L1 5815 6157 -9 5763 211 56 11 chr9 8184563 8187059 -134084385 + L1MB1 LINE L1 3798 6404 0 429 279 65 13 chr9 8187938 8188092 -134083352 + L2 LINE L2 34 195 -3119 672 278 17 43 chr9 8188111 8188345 -134083099 + L2 LINE L2 3078 3305 -8 299 290 29 88 chr9 8188528 8188969 -134082475 + MLT1I LTR MaLR 1 409 0 220 304 98 29 chr9 8189254 8189356 -134082088 - L2 LINE L2 -2 3311 3203 512 255 180 12 chr9 8189590 8189751 -134081693 - MIR SINE MIR -59 203 16 465 297 24 0 chr9 8190217 8190382 -134081062 - LTR33 LTR ERVL -4 517 349 2102 220 28 18 chr9 8190412 8190912 -134080532 + MLT1D LTR MaLR 1 505 0 900 267 50 21 chr9 8190912 8191193 -134080251 - LTR33 LTR ERVL -232 289 1 351 356 58 14 chr9 8191641 8191849 -134079595 - L2 LINE L2 -214 3058 2842 189 132 0 0 chr9 8192295 8192333 -134079111 + (CA)n Simple_repeat Simple_repeat 2 39 0 200 294 103 66 chr9 8192817 8192953 -134078491 + MIR3 SINE MIR 8 148 -60 279 318 155 0 chr9 8193017 8193165 -134078279 + MIR SINE MIR 51 221 -41 745 142 0 15 chr9 8195586 8195720 -134075724 - FLAM_C SINE Alu 0 133 2 238 276 20 82 chr9 8196587 8196685 -134074759 + L2 LINE L2 1142 1233 -2081 5636 167 13 15 chr9 8196685 8198560 -134072884 - L1PB1 LINE L1 0 6151 4286 2169 134 0 0 chr9 8198560 8198859 -134072585 - AluSq SINE Alu -14 299 1 5636 167 13 15 chr9 8198859 8199126 -134072318 - L1PB1 LINE L1 -1865 4286 4020 1556 326 65 56 chr9 8199132 8199496 -134071948 + L2 LINE L2 1229 1588 -1726 861 149 0 0 chr9 8199496 8199650 -134071794 + L1MA4 LINE L1 6145 6298 -2 1556 326 65 56 chr9 8199650 8200147 -134071297 + L2 LINE L2 1588 2098 -1216 307 39 77 0 chr9 8200389 8200441 -134071003 - L1P1 LINE L1 -710 5445 5390 6180 53 1 1 chr9 8200441 8201257 -134070187 + L1P LINE L1 3469 4284 -1862 271 103 0 0 chr9 8201275 8201314 -134070130 - MLT2D LTR ERVL -48 366 328 216 0 0 0 chr9 8201315 8201339 -134070105 + (CA)n Simple_repeat Simple_repeat 1 24 0 280 135 19 0 chr9 8201345 8201397 -134070047 + MLT2B1 LTR ERVL 468 520 0 227 303 73 28 chr9 8202430 8202539 -134068905 - L2 LINE L2 -220 3052 2939 325 325 56 51 chr9 8202973 8203348 -134068096 + HAL1 LINE L1 4 380 -2127 339 310 92 28 chr9 8203413 8203555 -134067889 + HAL1 LINE L1 480 630 -1877 2297 89 0 7 chr9 8203796 8204088 -134067356 - AluSg SINE Alu -20 290 1 207 221 13 39 chr9 8204152 8204229 -134067215 + A-rich Low_complexity Low_complexity 5 79 0 2241 152 12 14 chr9 8204853 8205273 -134066171 + L1MB3 LINE L1 5757 6175 -8 39 60 0 0 chr9 8205432 8205499 -134065945 + AT_rich Low_complexity Low_complexity 1 67 0 1929 147 17 3 chr9 8205499 8205798 -134065646 + AluSx SINE Alu 1 303 -9 411 285 57 85 chr9 8206991 8207237 -134064207 - MIR3 SINE MIR -18 244 6 1830 160 0 14 chr9 8208483 8208777 -134062667 + AluJb SINE Alu 1 290 -22 857 284 96 11 chr9 8209095 8209458 -134061986 + MLT1I LTR MaLR 1 394 -15 338 288 25 25 chr9 8210932 8211050 -134060394 + MER5A DNA MER1_type 35 152 -37 288 222 28 0 chr9 8211279 8211351 -134060093 + MLT1L LTR MaLR 5 78 -537 242 244 155 37 chr9 8211421 8211598 -134059846 + MLT1J2 LTR MaLR 72 315 -196 313 315 89 98 chr9 8212481 8212808 -134058636 + L2 LINE L2 2930 3253 -19 2774 10 0 0 chr9 8212814 8213117 -134058327 + AluYb8 SINE Alu 16 318 0 23 0 0 0 chr9 8213117 8213140 -134058304 + AT_rich Low_complexity Low_complexity 1 23 0 255 289 22 11 chr9 8213178 8213268 -134058176 - MER103 DNA DNA -75 91 1 395 349 12 41 chr9 8213365 8213466 -134057978 - MIR3 SINE MIR -21 187 92 1732 251 40 41 chr9 8213466 8214021 -134057423 - MLT2B3 LTR ERVL 0 554 1 395 349 12 41 chr9 8214021 8214091 -134057353 - MIR3 SINE MIR -116 92 21 1304 20 0 0 chr9 8214624 8214776 -134056668 + L1PA2 LINE L1 6004 6155 0 1401 137 30 5 chr9 8214786 8215076 -134056368 - MLT2D LTR ERVL -65 349 3 333 280 59 59 chr9 8215225 8215343 -134056101 + MER5B DNA MER1_type 61 178 0 275 281 41 89 chr9 8216289 8216435 -134055009 - MIR3 SINE MIR -66 142 4 * 391 365 97 24 chr9 8216435 8216695 -134054749 + L2 LINE L2 2267 2547 -767 1928 174 10 0 chr9 8217622 8217927 -134053517 - AluJb SINE Alu 0 312 5 228 200 0 20 chr9 8218144 8218194 -134053250 + L2 LINE L2 3219 3267 -5 254 309 9 18 chr9 8218630 8218740 -134052704 + GA-rich Low_complexity Low_complexity 4 112 0 625 274 46 20 chr9 8219726 8219923 -134051521 - MIR SINE MIR 0 262 61 2083 179 3 6 chr9 8219926 8220289 -134051155 + MLT1A1 LTR MaLR 1 362 -3 242 254 32 16 chr9 8220596 8220659 -134050785 + L2 LINE L2 3249 3312 -1 208 353 60 24 chr9 8220739 8220906 -134050538 - L2 LINE L2 -635 2679 2507 195 424 47 0 chr9 8221056 8221141 -134050303 + L2 LINE L2 3121 3209 -63 320 333 42 0 chr9 8222492 8222612 -134048832 + MIR SINE MIR 55 179 -83 304 247 37 12 chr9 8223044 8223125 -134048319 + L2 LINE L2 3185 3267 -5 240 35 0 0 chr9 8223126 8223155 -134048289 + (T)n Simple_repeat Simple_repeat 1 29 0 2530 59 3 3 chr9 8223394 8223700 -134047744 - AluSc SINE Alu 0 309 4 703 57 0 0 chr9 8224047 8224135 -134047309 - AluY SINE Alu -222 88 1 642 305 59 29 chr9 8224804 8225246 -134046198 + L1MEc LINE L1 69 523 -5873 369 0 0 0 chr9 8225258 8225299 -134046145 + (TG)n Simple_repeat Simple_repeat 1 41 0 183 80 0 0 chr9 8225299 8225324 -134046120 + (GA)n Simple_repeat Simple_repeat 2 26 0 374 321 9 0 chr9 8226481 8226587 -134044857 + L2 LINE L2 3188 3294 -19 953 252 20 56 chr9 8226708 8226769 -134044675 - MLT2F LTR ERVL 0 663 601 287 85 21 0 chr9 8226769 8226816 -134044628 + (TG)n Simple_repeat Simple_repeat 2 49 0 953 252 20 56 chr9 8226816 8227060 -134044384 - MLT2F LTR ERVL -62 601 369 1812 141 3 40 chr9 8227143 8227440 -134044004 + AluSq SINE Alu 1 286 -27 425 228 6 64 chr9 8229975 8230100 -134041344 - L1MA10 LINE L1 -2 6332 6218 1764 189 5 39 chr9 8230100 8230482 -134040962 - MLT1A2 LTR MaLR -2 372 4 425 228 6 64 chr9 8230482 8230527 -134040917 - L1MA10 LINE L1 -116 6218 6172 1946 144 31 7 chr9 8230533 8230824 -134040620 - AluSx SINE Alu -14 298 1 1643 207 58 24 chr9 8230836 8231252 -134040192 - L1ME1 LINE L1 -246 5920 5491 4871 234 59 26 chr9 8231261 8232343 -134039101 - L1ME1 LINE L1 -1031 5115 3950 1990 195 29 0 chr9 8232343 8232722 -134038722 - MLT1B LTR MaLR 0 390 1 4871 234 59 26 chr9 8232722 8233392 -134038052 - L1ME1 LINE L1 -2196 3950 3304 5205 260 32 31 chr9 8233578 8235660 -134035784 + L1PA16 LINE L1 1473 3556 -2590 326 100 0 0 chr9 8235660 8235710 -134035734 - MLT2A2 LTR ERVL 0 453 404 374 127 14 0 chr9 8235712 8235783 -134035661 + (TA)n Simple_repeat Simple_repeat 1 72 0 313 187 33 44 chr9 8235785 8235876 -134035568 - L1MC4 LINE L1 -1339 6703 6614 3007 85 15 0 chr9 8235890 8236301 -134035143 - MLT2A2 LTR ERVL -35 418 2 6803 193 31 7 chr9 8236303 8236430 -134035014 + L1PA16 LINE L1 3553 3675 -2491 213 65 0 0 chr9 8236430 8236461 -134034983 + (CAA)n Simple_repeat Simple_repeat 2 32 0 6803 193 31 7 chr9 8236461 8238327 -134033117 + L1PA16 LINE L1 3675 5624 -542 2041 141 7 0 chr9 8238327 8238624 -134032820 + AluSx SINE Alu 1 299 -13 6803 193 31 7 chr9 8238624 8239180 -134032264 + L1PA16 LINE L1 5624 6165 -1 856 222 63 12 chr9 8239398 8239838 -134031606 + MLT1D LTR MaLR 7 505 0 202 349 0 0 chr9 8241312 8241375 -134030069 + L2 LINE L2 3210 3272 0 216 0 0 0 chr9 8242944 8242968 -134028476 + (A)n Simple_repeat Simple_repeat 1 24 0 21 57 0 0 chr9 8243503 8243538 -134027906 + AT_rich Low_complexity Low_complexity 1 35 0 1650 140 118 4 chr9 8243541 8243820 -134027624 + AluSx SINE Alu 1 311 -1 335 349 11 48 chr9 8244149 8244338 -134027106 - MER5A DNA MER1_type -6 183 2 302 206 29 0 chr9 8244489 8244557 -134026887 - Charlie8 DNA MER1_type -1000 1417 1348 227 313 82 41 chr9 8245044 8245191 -134026253 + MIR SINE MIR 96 248 -14 396 0 0 0 chr9 8245555 8245599 -134025845 + (CA)n Simple_repeat Simple_repeat 2 45 0 487 242 8 8 chr9 8246322 8246442 -134025002 + MLT1J1 LTR MaLR 1 120 -326 439 237 96 20 chr9 8246517 8246715 -134024729 + MLT1J1 LTR MaLR 234 446 0 1106 216 82 40 chr9 8246741 8247100 -134024344 - L1M4 LINE L1 -1271 4875 4492 219 36 0 0 chr9 8247100 8247128 -134024316 + (TG)n Simple_repeat Simple_repeat 2 29 0 1106 216 82 40 chr9 8247128 8247218 -134024226 - L1M4 LINE L1 -1654 4492 4407 4083 276 69 10 chr9 8247223 8249107 -134022337 - L1M4 LINE L1 -1880 4266 2271 28925 104 13 26 chr9 8249113 8255216 -134016228 - L1PA7 LINE L1 -1 6468 371 455 279 52 73 chr9 8255198 8255396 -134016048 - L1ME LINE L1 -5608 462 274 * 1960 160 0 0 chr9 8255396 8255702 -134015742 - AluSx SINE Alu -6 306 1 455 279 52 73 chr9 8255702 8255872 -134015572 - L1ME LINE L1 -5796 274 102 539 289 96 56 chr9 8255878 8256328 -134015116 - L1ME LINE L1 -5582 488 21 303 304 188 0 chr9 8256368 8256480 -134014964 - MIR3 SINE MIR -9 199 67 1775 190 16 19 chr9 8257124 8257425 -134014019 + MLT1A1 LTR MaLR 3 304 -61 574 88 0 0 chr9 8257425 8257505 -134013939 - MADE1 DNA Mariner 0 80 1 1775 190 16 19 chr9 8257505 8257567 -134013877 + MLT1A1 LTR MaLR 304 365 0 199 299 104 0 chr9 8258505 8258572 -134012872 + L2 LINE L2 3160 3233 -39 25 0 0 0 chr9 8259206 8259231 -134012213 + AT_rich Low_complexity Low_complexity 1 25 0 270 122 0 0 chr9 8260282 8260323 -134011121 - ERVL LTR ERVL -467 5297 5257 396 0 0 0 chr9 8260355 8260399 -134011045 + (TAGA)n Simple_repeat Simple_repeat 3 46 0 210 250 0 0 chr9 8260407 8260451 -134010993 + (CATA)n Simple_repeat Simple_repeat 2 45 0 1112 272 91 7 chr9 8260492 8260911 -134010533 - MLT2B2 LTR ERVL -61 454 1 4517 125 62 15 chr9 8260930 8261118 -134010326 + MER4E LTR ERV1 1 179 -600 2202 91 14 7 chr9 8261118 8261405 -134010039 + AluSc SINE Alu 1 289 -20 4517 125 62 15 chr9 8261405 8261960 -134009484 + MER4E LTR ERV1 179 779 0 3591 173 21 6 chr9 8261960 8262658 -134008786 - MER50 LTR ERV1 -25 709 1 1891 278 66 12 chr9 8262660 8263053 -134008391 - ERVL LTR ERVL -510 5254 4811 3603 142 23 5 chr9 8263053 8263652 -134007792 - MER4B LTR ERV1 0 610 1 1891 278 66 12 chr9 8263652 8263906 -134007538 - ERVL LTR ERVL -953 4811 4572 1869 233 93 47 chr9 8263959 8264603 -134006841 - ERVL LTR ERVL -1278 4486 3813 182 33 67 0 chr9 8264887 8264917 -134006527 + (TTTA)n Simple_repeat Simple_repeat 1 32 0 1924 163 56 28 chr9 8265212 8265679 -134005765 + MLT2A2 LTR ERVL 1 483 -71 2284 114 0 0 chr9 8265679 8265987 -134005457 - AluSq SINE Alu -5 308 1 1924 163 56 28 chr9 8265987 8266062 -134005382 + MLT2A2 LTR ERVL 483 554 0 1454 264 79 39 chr9 8266077 8266829 -134004615 - ERVL LTR ERVL -2585 2900 2104 1134 302 51 20 chr9 8267016 8267407 -134004037 - MLT2E LTR ERVL -59 569 167 809 175 0 0 chr9 8268106 8268232 -134003212 - FLAM_A SINE Alu -7 126 1 180 321 19 0 chr9 8269078 8269131 -134002313 + L2 LINE L2 3255 3308 -5 547 313 35 31 chr9 8269281 8269508 -134001936 + MIR SINE MIR 8 235 -27 182 289 0 0 chr9 8269478 8269523 -134001921 + L2 LINE L2 3251 3295 -18 * 2080 198 75 13 chr9 8269554 8270019 -134001425 + MLT1D LTR MaLR 12 505 0 2367 317 112 59 chr9 8270635 8271260 -134000184 - L2 LINE L2 0 3313 2723 2131 75 11 4 chr9 8271260 8271526 -133999918 - AluSp SINE Alu -7 306 39 2367 317 112 59 chr9 8271526 8273535 -133997909 - L2 LINE L2 -590 2723 541 239 267 22 0 chr9 8273558 8273648 -133997796 + (TATATG)n Simple_repeat Simple_repeat 4 95 0 333 292 23 46 chr9 8275075 8275205 -133996239 - L2 LINE L2 0 3313 3187 342 0 0 0 chr9 8275686 8275724 -133995720 + (CA)n Simple_repeat Simple_repeat 2 39 0 1984 163 14 0 chr9 8277357 8277712 -133993732 + MER46B DNA MER2_type -1 233 -3 291 303 138 9 chr9 8277716 8277825 -133993619 - MIR SINE MIR -130 132 10 484 305 17 40 chr9 8277867 8278044 -133993400 - MER5B DNA MER1_type -3 175 3 967 321 111 38 chr9 8278094 8278136 -133993308 - L2 LINE L2 -5 3308 3271 1715 155 197 11 chr9 8278136 8278497 -133992947 + MSTA LTR MaLR 1 428 0 9583 118 35 39 chr9 8278499 8280082 -133991362 + MSTA-int LTR MaLR 3 1580 0 1363 176 92 42 chr9 8280082 8280439 -133991005 + THE1C LTR MaLR 1 375 0 967 321 111 38 chr9 8280439 8280841 -133990603 - L2 LINE L2 -41 3272 2827 5857 147 11 31 chr9 8282147 8282945 -133988499 - L1MA3 LINE L1 0 7724 6912 2133 117 3 13 chr9 8282945 8283244 -133988200 - AluSq SINE Alu -8 305 10 5857 147 11 31 chr9 8283244 8284536 -133986908 - L1MA3 LINE L1 -812 6912 5677 19314 167 39 12 chr9 8284544 8286204 -133985240 - L1MA3 LINE L1 -2748 4817 3202 2265 104 0 13 chr9 8286204 8286511 -133984933 + AluSg SINE Alu 1 303 -7 19314 167 39 12 chr9 8286511 8287330 -133984114 - L1MA3 LINE L1 -4363 3202 2406 2397 84 0 10 chr9 8287330 8287640 -133983804 - AluY SINE Alu -4 307 1 19314 167 39 12 chr9 8287640 8289838 -133981606 - L1MA3 LINE L1 -5159 2406 14 369 0 0 0 chr9 8290070 8290111 -133981333 + (GA)n Simple_repeat Simple_repeat 2 42 0 199 318 30 15 chr9 8290305 8290371 -133981073 - L3b LINE CR1 0 1583 1517 2098 138 33 28 chr9 8290391 8290753 -133980691 - THE1B LTR MaLR 0 364 1 384 360 14 7 chr9 8290753 8290892 -133980552 - MIR3 SINE MIR -25 183 44 243 295 84 0 chr9 8292022 8292117 -133979327 + MIR SINE MIR 121 223 -39 242 294 71 0 chr9 8292151 8292236 -133979208 + MIR SINE MIR 121 211 -51 303 264 45 15 chr9 8292311 8292512 -133978932 + MER113 DNA MER1_type? 19 225 -296 480 229 238 0 chr9 8292583 8292705 -133978739 + MER5A DNA MER1_type 9 159 -30 350 245 115 43 chr9 8293891 8294030 -133977414 - MIR3 SINE MIR 0 208 60 1124 265 54 52 chr9 8295800 8296245 -133975199 - MLT1J1 LTR MaLR 0 446 1 340 296 12 0 chr9 8296374 8296455 -133974989 - L2 LINE L2 0 3272 3191 180 0 0 0 chr9 8296780 8296800 -133974644 + (CAA)n Simple_repeat Simple_repeat 2 21 0 293 298 107 16 chr9 8297020 8297141 -133974303 + MIR SINE MIR 17 148 -114 1363 213 24 14 chr9 8297984 8298275 -133973169 - MLT1A1 LTR MaLR -71 294 1 378 237 89 106 chr9 8298671 8298907 -133972537 - MLT1L LTR MaLR -221 394 163 504 196 0 14 chr9 8298997 8299135 -133972309 - LTR37A LTR ERV1 0 426 291 34800 90 18 11 chr9 8299173 8305283 -133966161 + L1PA6 LINE L1 11 6154 0 21 0 0 0 chr9 8305283 8305304 -133966140 + AT_rich Low_complexity Low_complexity 1 21 0 1978 118 38 3 chr9 8305343 8305631 -133965813 + AluSx SINE Alu 1 298 -14 634 221 12 91 chr9 8305640 8305894 -133965550 - LTR37A LTR ERV1 -174 252 19 827 217 27 0 chr9 8306938 8307122 -133964322 - MER5A DNA MER1_type 0 189 1 191 231 183 10 chr9 8308698 8308802 -133962642 - MIR SINE MIR 0 262 141 5923 88 11 16 chr9 8308869 8309767 -133961677 - L1PA12 LINE L1 0 6168 5275 1191 190 86 30 chr9 8309857 8310267 -133961177 + MLT1D LTR MaLR 1 483 -22 242 243 139 56 chr9 8310965 8311109 -133960335 - MIR SINE MIR -26 236 81 572 295 100 33 chr9 8312075 8312404 -133959040 + LTR33 LTR ERVL 167 517 -4 212 167 0 0 chr9 8313835 8313877 -133957567 + A-rich Low_complexity Low_complexity 1 42 0 1047 291 42 9 chr9 8315348 8315681 -133955763 - MLT1I LTR MaLR -3 406 63 222 320 120 10 chr9 8316820 8316920 -133954524 - L2 LINE L2 0 3313 3203 242 217 0 0 chr9 8317642 8317688 -133953756 - MIR SINE MIR -110 152 107 1101 211 52 83 chr9 8318044 8318489 -133952955 + MLT1C LTR MaLR 37 467 0 217 87 22 22 chr9 8318518 8318564 -133952880 + (TTTTG)n Simple_repeat Simple_repeat 2 47 0 1822 150 89 29 chr9 8318643 8319023 -133952421 + MER57A LTR ERV1 1 403 0 3062 168 3 43 chr9 8319056 8319585 -133951859 + MLT2B3 LTR ERVL 1 507 -47 1826 171 33 0 chr9 8319585 8319918 -133951526 + MER2 DNA MER2_type 1 344 0 3062 168 3 43 chr9 8319918 8319965 -133951479 + MLT2B3 LTR ERVL 507 554 0 293 216 0 0 chr9 8320116 8320167 -133951277 - MLT2B3 LTR ERVL -175 379 329 430 292 192 9 chr9 8320559 8320778 -133950666 - MIR SINE MIR 0 262 4 200 354 0 97 chr9 8320926 8321039 -133950405 + MIR SINE MIR 19 120 -88 12173 129 27 13 chr9 8322641 8323582 -133947862 - Tigger1 DNA MER2_type 0 2418 1491 2259 115 0 0 chr9 8323582 8323878 -133947566 - AluSg SINE Alu -14 296 1 12173 129 27 13 chr9 8323878 8325228 -133946216 - Tigger1 DNA MER2_type -927 1491 1 379 311 7 40 chr9 8325390 8325538 -133945906 - L2 LINE L2 -4 3309 3167 448 293 66 52 chr9 8325738 8325950 -133945494 - MLT1K LTR MaLR -185 403 189 373 215 45 0 chr9 8326017 8326106 -133945338 - FRAM SINE Alu -72 94 11 229 262 7 117 chr9 8326415 8326560 -133944884 - MIR SINE MIR -27 235 107 196 265 61 92 chr9 8327278 8327376 -133944068 - MIR SINE MIR -48 214 120 914 210 88 46 chr9 8327438 8327767 -133943677 - MER2 DNA MER2_type -1 343 1 275 280 30 10 chr9 8328442 8328542 -133942902 + MLT1J2 LTR MaLR 7 108 -342 403 300 73 0 chr9 8328574 8328684 -133942760 + MLT1J2 LTR MaLR 188 305 -145 223 344 211 0 chr9 8328803 8328893 -133942551 + L2 LINE L2 3142 3250 -22 469 264 76 108 chr9 8329085 8329335 -133942109 - L3 LINE CR1 -933 644 403 314 372 30 12 chr9 8329345 8329509 -133941935 - L3 LINE CR1 -1376 201 35 1555 182 8 54 chr9 8329704 8329838 -133941606 - L1MB5 LINE L1 -2 6172 6033 1757 182 7 3 chr9 8329838 8330134 -133941310 + AluJb SINE Alu 1 297 -15 1555 182 8 54 chr9 8330134 8330331 -133941113 - L1MB5 LINE L1 -141 6033 5857 3460 111 8 2 chr9 8330331 8330838 -133940606 - MER75 DNA T2_type 0 514 5 1555 182 8 54 chr9 8330838 8330874 -133940570 - L1MB5 LINE L1 -317 5857 5821 1401 210 16 11 chr9 8330886 8331311 -133940133 - L1MA8 LINE L1 0 6291 5469 210 189 0 19 chr9 8331313 8331366 -133940078 + T-rich Low_complexity Low_complexity 5 56 0 5954 213 44 22 chr9 8331376 8331431 -133940013 - L1MB5 LINE L1 -697 5477 5425 1491 173 0 0 chr9 8331431 8331662 -133939782 - AluJb SINE Alu -6 306 76 5954 213 44 22 chr9 8331662 8333380 -133938064 - L1MB5 LINE L1 -749 5425 3657 180 276 143 29 chr9 8333703 8333808 -133937636 + L2 LINE L2 3197 3313 0 * 981 271 12 0 chr9 8333805 8334052 -133937392 - MIR SINE MIR 0 262 13 186 267 17 50 chr9 8334723 8334783 -133936661 + L2 LINE L2 2590 2647 -667 464 229 28 28 chr9 8335073 8335217 -133936227 + L1MC4a LINE L1 5826 5969 -1839 358 298 0 11 chr9 8335855 8335949 -133935495 - L2 LINE L2 0 3272 3180 1364 217 26 29 chr9 8336122 8336435 -133935009 - MLT1A1 LTR MaLR -53 312 1 1900 237 60 5 chr9 8336442 8336860 -133934584 - MLT1A1-int LTR MaLR -1 1734 1294 5584 169 30 22 chr9 8337339 8338057 -133933387 + L1PA16 LINE L1 4412 5123 -1043 1841 180 3 0 chr9 8338057 8338368 -133933076 - AluJb SINE Alu 0 312 1 5584 169 30 22 chr9 8338368 8339387 -133932057 + L1PA16 LINE L1 5123 6156 -10 492 304 42 6 chr9 8339483 8339651 -133931793 - MER5B DNA MER1_type -4 174 1 204 413 7 21 chr9 8339850 8339993 -133931451 - MIR SINE MIR -116 146 6 732 256 55 29 chr9 8340141 8340379 -133931065 + MLT1A2 LTR MaLR 131 374 0 261 0 0 0 chr9 8340458 8340487 -133930957 + (A)n Simple_repeat Simple_repeat 1 29 0 477 28 9 255 chr9 8341132 8341238 -133930206 - MADE1 DNA Mariner 0 80 1 485 292 92 33 chr9 8342565 8342805 -133928639 + MIR SINE MIR 9 262 0 208 333 14 0 chr9 8343462 8343531 -133927913 - MIR SINE MIR -113 149 80 286 272 25 0 chr9 8344670 8344751 -133926693 + L2 LINE L2 2998 3080 -192 228 324 109 39 chr9 8344955 8345185 -133926259 + L2 LINE L2 2772 3057 -215 1973 138 41 29 chr9 8346015 8346355 -133925089 + MER2 DNA MER2_type 1 344 0 219 259 55 28 chr9 8346497 8346595 -133924849 + L2 LINE L2 2875 2983 -330 1154 259 95 18 chr9 8346633 8347023 -133924421 - LTR16A LTR ERVL -13 437 18 441 253 140 43 chr9 8347503 8347874 -133923570 - L1ME4a LINE L1 -1 6120 5714 430 313 40 45 chr9 8348039 8348215 -133923229 + MIR3 SINE MIR 33 207 -1 410 290 15 8 chr9 8348848 8348979 -133922465 - MIR SINE MIR -10 252 121 6080 161 46 18 chr9 8349388 8349812 -133921632 + Tigger1 DNA MER2_type 3 413 -2005 2188 96 0 0 chr9 8349812 8350084 -133921360 + AluSg SINE Alu 2 273 -37 222 37 0 0 chr9 8350088 8350115 -133921329 + (CAA)n Simple_repeat Simple_repeat 1 27 0 6080 161 46 18 chr9 8350115 8350769 -133920675 + Tigger1 DNA MER2_type 415 1117 -1301 2541 127 117 5 chr9 8350775 8351193 -133920251 + MER4C LTR ERV1 1 465 0 446 115 0 0 chr9 8351194 8351255 -133920189 + Tigger1 DNA MER2_type 1120 1180 -1238 7753 136 14 19 chr9 8351425 8352042 -133919402 + Tigger1 DNA MER2_type 1187 1795 -623 2191 134 0 0 chr9 8352042 8352347 -133919097 + AluSg SINE Alu 1 305 -5 7753 136 14 19 chr9 8352347 8352968 -133918476 + Tigger1 DNA MER2_type 1795 2418 0 239 257 149 0 chr9 8353371 8353445 -133917999 + L2 LINE L2 3203 3287 -26 7516 49 1 0 chr9 8353779 8355224 -133916220 - L1PA5 LINE L1 0 6154 4700 245 316 70 18 chr9 8355527 8355641 -133915803 - MIR SINE MIR -44 218 99 305 277 79 2 chr9 8356338 8356469 -133914975 + MIR SINE MIR 18 157 -92 639 301 128 38 chr9 8357225 8358069 -133913375 - L2 LINE L2 0 3313 2380 256 260 128 108 chr9 8358200 8358450 -133912994 + MIR SINE MIR 8 262 0 189 295 67 95 chr9 8358566 8358671 -133912773 + MIR SINE MIR 45 146 -62 211 263 147 32 chr9 8358827 8358922 -133912522 - MIR SINE MIR -71 191 86 1345 155 116 5 chr9 8359191 8359487 -133911957 - MER33 DNA MER1_type -4 320 1 195 100 0 0 chr9 8359786 8359816 -133911628 + (TA)n Simple_repeat Simple_repeat 2 31 0 333 270 174 0 chr9 8360760 8360875 -133910569 + MIR SINE MIR 60 194 -68 479 313 44 22 chr9 8362137 8362319 -133909125 + MER5A DNA MER1_type 1 186 -3 268 214 2 2 chr9 8363256 8363321 -133908123 - MLT1L LTR MaLR -137 465 310 219 289 0 0 chr9 8363674 8363719 -133907725 + polypurine Low_complexity Low_complexity 3 47 0 2269 97 0 17 chr9 8364957 8365257 -133906187 + AluY SINE Alu 1 295 -16 318 259 47 0 chr9 8366614 8366699 -133904745 - MIR3 SINE MIR -8 200 112 2044 299 56 19 chr9 8366709 8367691 -133903753 - L2 LINE L2 -1 3312 2298 2329 112 0 0 chr9 8368575 8368880 -133902564 - AluSx SINE Alu -7 305 1 211 294 22 66 chr9 8368974 8369110 -133902334 - MIR SINE MIR -42 220 91 237 263 158 21 chr9 8369692 8369787 -133901657 - MIR SINE MIR -69 193 86 244 207 64 129 chr9 8370034 8370174 -133901270 + MIR SINE MIR 66 196 -66 594 101 13 0 chr9 8370325 8370404 -133901040 - MADE1 DNA Mariner 0 80 1 262 315 130 55 chr9 8370970 8371069 -133900375 + L2 LINE L2 3116 3231 -41 1743 188 94 31 chr9 8371069 8371420 -133900024 - MER93b LTR ERV1 0 373 1 262 315 130 55 chr9 8371420 8371466 -133899978 + L2 LINE L2 3231 3272 0 26 0 0 0 chr9 8371697 8371723 -133899721 + AT_rich Low_complexity Low_complexity 1 26 0 183 299 94 39 chr9 8371941 8372068 -133899376 - MIR SINE MIR -106 156 23 22 0 0 0 chr9 8372488 8372510 -133898934 + GC_rich Low_complexity Low_complexity 1 22 0 21 0 0 0 chr9 8373201 8373222 -133898222 + AT_rich Low_complexity Low_complexity 1 21 0 280 282 141 43 chr9 8373244 8373407 -133898037 - MIR SINE MIR -64 198 20 271 297 59 20 chr9 8373709 8373810 -133897634 + MIR SINE MIR 110 214 -48 26 88 0 0 chr9 8374262 8374330 -133897114 + AT_rich Low_complexity Low_complexity 1 68 0 217 364 64 16 chr9 8374491 8374648 -133896796 - MIR SINE MIR -39 223 55 231 353 49 8 chr9 8375309 8375431 -133896013 - L3 LINE CR1 -95 1482 1356 2451 158 61 7 chr9 8375496 8375908 -133895536 - Tigger2a DNA MER2_type 0 434 1 180 0 0 0 chr9 8377229 8377249 -133894195 + (T)n Simple_repeat Simple_repeat 1 20 0 1737 204 115 87 chr9 8377495 8378102 -133893342 + MLT1E3 LTR MaLR 1 624 0 326 283 242 0 chr9 8378353 8378473 -133892971 - MIR SINE MIR -25 237 89 722 328 80 48 chr9 8378766 8379770 -133891674 + L2 LINE L2 2233 3272 0 717 195 32 32 chr9 8379837 8379991 -133891453 + MER5A DNA MER1_type 1 154 -35 480 369 5 5 chr9 8380070 8380257 -133891187 + MIR3 SINE MIR 20 206 -2 2411 135 136 131 chr9 8380567 8381176 -133890268 + LTR18B LTR ERVL 3 614 0 969 228 0 0 chr9 8381265 8381445 -133889999 - HERVL18 LTR ERVL -4803 1244 1065 13385 190 16 4 chr9 8381459 8383700 -133887744 + HERVL18 LTR ERVL 68 2335 -3712 5068 166 8 65 chr9 8383757 8384671 -133886773 + HERVL18 LTR ERVL 2718 3579 -2468 8661 156 6 1 chr9 8384673 8386314 -133885130 + HERVL18 LTR ERVL 4394 6047 0 2250 133 154 82 chr9 8386467 8387030 -133884414 + LTR18B LTR ERVL 1 604 -10 10355 136 43 12 chr9 8387273 8387418 -133884026 - Tigger1 DNA MER2_type -94 2324 2185 2369 91 0 13 chr9 8387418 8387725 -133883719 - AluSq SINE Alu -10 303 1 10355 136 43 12 chr9 8387725 8389779 -133881665 - Tigger1 DNA MER2_type -233 2185 1 260 250 9 26 chr9 8390577 8390693 -133880751 + (TA)n Simple_repeat Simple_repeat 1 114 0 396 59 0 0 chr9 8390698 8390749 -133880695 + (TG)n Simple_repeat Simple_repeat 1 51 0 358 329 43 23 chr9 8390751 8390929 -133880515 + MIR3 SINE MIR 10 194 -14 26 0 0 0 chr9 8391184 8391210 -133880234 + AT_rich Low_complexity Low_complexity 1 26 0 21 0 0 0 chr9 8391892 8391913 -133879531 + AT_rich Low_complexity Low_complexity 1 21 0 950 288 107 28 chr9 8392050 8392584 -133878860 - L1MC4a LINE L1 -1926 5882 5307 383 303 139 24 chr9 8392587 8392960 -133878484 - L1MC4a LINE L1 -846 5300 4885 707 158 113 15 chr9 8392982 8393115 -133878329 + FAM SINE Alu 20 165 -20 23 68 0 0 chr9 8393116 8393160 -133878284 + AT_rich Low_complexity Low_complexity 1 44 0 329 169 12 0 chr9 8393179 8393262 -133878182 + (TA)n Simple_repeat Simple_repeat 2 85 0 459 337 56 6 chr9 8393262 8393603 -133877841 - L1MC4a LINE L1 -1301 4845 4488 342 0 0 0 chr9 8393823 8393861 -133877583 + (TG)n Simple_repeat Simple_repeat 1 38 0 313 335 76 38 chr9 8393872 8394162 -133877282 - L1MC4a LINE L1 -2476 3670 3370 1681 199 0 4 chr9 8394168 8394449 -133876995 + AluJo SINE Alu 1 280 -32 1288 244 101 7 chr9 8394536 8394950 -133876494 + MLT1D LTR MaLR 51 503 -2 514 217 45 19 chr9 8395029 8395186 -133876258 - HAL1b LINE L1 -849 499 339 24 53 0 0 chr9 8395767 8395805 -133875639 + AT_rich Low_complexity Low_complexity 1 38 0 596 238 50 30 chr9 8397970 8398172 -133873272 + MLT1I LTR MaLR 204 409 0 269 214 71 0 chr9 8398174 8398244 -133873200 + MER20B DNA MER1_type 4 78 -705 21 71 0 0 chr9 8398469 8398511 -133872933 + AT_rich Low_complexity Low_complexity 1 42 0 231 316 13 26 chr9 8398537 8398613 -133872831 + L2 LINE L2 3190 3264 -8 462 301 38 0 chr9 8400635 8400768 -133870676 - MIR SINE MIR -64 198 61 413 306 108 16 chr9 8400815 8401001 -133870443 - MIR SINE MIR -59 203 1 480 319 32 27 chr9 8401421 8401609 -133869835 - MIR SINE MIR -40 222 34 224 100 25 0 chr9 8402695 8402735 -133868709 + (TTTTTA)n Simple_repeat Simple_repeat 2 42 0 1354 13 0 0 chr9 8402741 8402896 -133868548 - L1PA2 LINE L1 -4 6151 5997 551 29 0 0 chr9 8402896 8402964 -133868480 + L1PA2 LINE L1 5903 5970 -185 21 36 0 0 chr9 8403554 8403582 -133867862 + AT_rich Low_complexity Low_complexity 1 28 0 7071 26 8 0 chr9 8403889 8404757 -133866687 - L1PA5 LINE L1 -5 6149 5275 265 296 35 70 chr9 8405005 8405024 -133866420 - MER5A DNA MER1_type -1 188 170 1361 171 117 107 chr9 8405024 8405122 -133866322 - MSTD LTR MaLR 0 396 300 2342 110 0 3 chr9 8405122 8405432 -133866012 - AluSg SINE Alu -1 309 1 1361 171 117 107 chr9 8405432 8405725 -133865719 - MSTD LTR MaLR -96 300 1 265 296 35 70 chr9 8405725 8405820 -133865624 - MER5A DNA MER1_type -19 170 78 2106 248 55 23 chr9 8405827 8406488 -133864956 + L1ME1 LINE L1 5480 6161 -5 363 44 0 0 chr9 8406615 8406660 -133864784 + (TG)n Simple_repeat Simple_repeat 1 45 0 219 186 0 0 chr9 8406896 8406939 -133864505 + (TATATG)n Simple_repeat Simple_repeat 3 45 0 1436 127 16 65 chr9 8406948 8407255 -133864189 + L1MB8 LINE L1 5887 6178 0 2282 231 49 50 chr9 8407337 8408279 -133863165 + L1MC5 LINE L1 6638 7578 -383 401 258 117 16 chr9 8408420 8408548 -133862896 + MER21B LTR ERV1 363 503 -360 423 194 57 87 chr9 8408580 8408639 -133862805 + L1MC5 LINE L1 7618 7677 -284 2112 134 3 10 chr9 8408639 8408952 -133862492 - AluSx SINE Alu -1 311 1 423 194 57 87 chr9 8408952 8409191 -133862253 + L1MC5 LINE L1 7677 7907 -54 1032 203 219 72 chr9 8410158 8410675 -133860769 + MLT1E1 LTR MaLR 1 654 0 322 205 60 12 chr9 8411427 8411510 -133859934 + MIR3 SINE MIR 87 173 -35 881 282 104 14 chr9 8411643 8412086 -133859358 + L1MC4a LINE L1 5413 5895 -1913 2308 91 3 52 chr9 8412094 8412423 -133859021 + AluSp SINE Alu 1 313 0 280 125 31 0 chr9 8412453 8412517 -133858927 + (TA)n Simple_repeat Simple_repeat 1 66 0 21 71 0 0 chr9 8412782 8412824 -133858620 + AT_rich Low_complexity Low_complexity 1 42 0 615 298 8 55 chr9 8413380 8413618 -133857826 + MIR SINE MIR 20 246 -16 550 220 143 14 chr9 8413612 8413796 -133857648 - MIR SINE MIR -19 243 40 * 2138 255 18 8 chr9 8415363 8415877 -133855567 - LTR40a LTR ERVL 0 519 1 737 263 95 0 chr9 8415877 8416109 -133855335 - HERVL40 LTR ERVL 0 5530 5277 447 322 17 29 chr9 8416095 8416334 -133855110 - MER89-int LTR ERV1 -319 6482 6247 * 285 266 48 96 chr9 8416433 8416662 -133854782 - HERVL40 LTR ERVL -333 2704 2487 716 242 49 65 chr9 8416879 8417209 -133854235 - HERVL40 LTR ERVL -688 4660 2034 1957 222 24 30 chr9 8417243 8417484 -133853960 + MLT1D LTR MaLR 8 249 -256 2129 109 53 34 chr9 8417484 8417841 -133853603 - THE1B LTR MaLR 0 364 1 1957 222 24 30 chr9 8417841 8418100 -133853344 + MLT1D LTR MaLR 249 505 0 6436 251 47 30 chr9 8418102 8420001 -133851443 - HERVL40 LTR ERVL -1269 4261 2330 895 284 74 53 chr9 8420001 8420506 -133850938 + L2 LINE L2 2750 3274 -39 654 279 25 20 chr9 8422170 8422367 -133849077 + MIR SINE MIR 10 207 -55 260 163 20 0 chr9 8422376 8422436 -133849008 + MLT1J LTR MaLR 7 67 -383 297 100 0 0 chr9 8422447 8422497 -133848947 + L1MA9 LINE L1 6263 6312 0 22 0 0 0 chr9 8422502 8422524 -133848920 + AT_rich Low_complexity Low_complexity 1 22 0 6464 72 25 0 chr9 8422732 8424045 -133847399 - L1PA8A LINE L1 0 6131 4800 448 283 51 11 chr9 8424051 8424228 -133847216 + MLT1J2 LTR MaLR 62 245 -205 2090 132 0 14 chr9 8424388 8424684 -133846760 - AluSx SINE Alu -20 292 1 738 264 50 5 chr9 8425711 8425912 -133845532 + MIR SINE MIR 35 244 -18 1023 166 33 6 chr9 8425941 8426122 -133845322 + MER5A DNA MER1_type 1 186 -3 965 314 44 42 chr9 8426198 8426673 -133844771 + MLT1K LTR MaLR 24 499 -89 187 329 21 70 chr9 8426730 8426823 -133844621 + MIR SINE MIR 120 205 -57 881 279 84 60 chr9 8426823 8427274 -133844170 - LTR16B LTR ERVL -2 462 1 187 329 21 70 chr9 8427274 8427323 -133844121 + MIR SINE MIR 205 255 -7 24 32 0 0 chr9 8427874 8427905 -133843539 + AT_rich Low_complexity Low_complexity 1 31 0 2217 115 10 0 chr9 8427985 8428289 -133843155 - AluSp SINE Alu -6 307 1 914 277 4 11 chr9 8429565 8429825 -133841619 + MIR SINE MIR 3 260 -2 198 71 0 0 chr9 8430359 8430387 -133841057 + (CA)n Simple_repeat Simple_repeat 2 29 0 230 380 64 64 chr9 8430577 8430938 -133840506 - L2 LINE L2 -39 3233 2873 436 275 192 0 chr9 8431219 8431412 -133840032 + Charlie8 DNA MER1_type 57 286 -2131 2228 174 59 17 chr9 8431816 8432225 -133839219 - MSTB LTR MaLR 0 426 1 1220 123 22 20 chr9 8433241 8433485 -133837959 - MLT2A2 LTR ERVL 0 453 280 2892 134 0 0 chr9 8433485 8433919 -133837525 + MER57B LTR ERV1 1 434 0 3944 137 41 6 chr9 8433919 8434571 -133836873 + MER57B-int LTR ERV1 1 675 -6862 * 6447 148 68 41 chr9 8434565 8437451 -133833993 + MER57B-int LTR ERV1 288 4041 -1905 5721 107 101 51 chr9 8437442 8439539 -133831905 + MER57B-int LTR ERV1 5307 7537 0 * 2003 104 0 3 chr9 8439539 8439828 -133831616 + MER57B LTR ERV1 1 288 -146 1948 120 7 7 chr9 8439828 8440136 -133831308 - MLT2A2 LTR ERVL -145 308 1 220 136 23 23 chr9 8440801 8440807 -133830637 + (TCCA)n Simple_repeat Simple_repeat 1 6 -38 1602 193 69 33 chr9 8440807 8441257 -133830187 - MER31B LTR ERV1 0 466 1 220 136 23 23 chr9 8441257 8441294 -133830150 + (TCCA)n Simple_repeat Simple_repeat 5 44 0 589 258 47 38 chr9 8441814 8442027 -133829417 - MIR SINE MIR -14 248 34 341 300 67 20 chr9 8442495 8442645 -133828799 - MIR SINE MIR -49 213 57 471 242 16 65 chr9 8442781 8442967 -133828477 + MER104 DNA Tc2 3 179 -1 2035 140 10 3 chr9 8443213 8443513 -133827931 + AluSq SINE Alu 1 302 -11 321 226 13 157 chr9 8443923 8444082 -133827362 + MIR SINE MIR 57 193 -15 303 222 198 0 chr9 8444500 8444581 -133826863 + L2 LINE L2 3176 3272 0 242 301 81 29 chr9 8445989 8446125 -133825319 + MIR SINE MIR 97 239 -23 264 77 0 0 chr9 8446126 8446165 -133825279 + (TTCA)n Simple_repeat Simple_repeat 1 39 0 450 277 21 27 chr9 8446457 8446645 -133824799 + MER5A DNA MER1_type 3 189 0 506 297 35 0 chr9 8447860 8448005 -133823439 - L2 LINE L2 0 3272 3123 689 274 8 60 chr9 8448718 8448952 -133822492 + MIR SINE MIR 41 262 0 407 328 0 10 chr9 8449092 8449287 -133822157 + L1M4 LINE L1 4025 4217 -1929 1516 149 7 24 chr9 8449298 8449656 -133821788 + Charlie3 DNA MER1_type 24 2712 0 368 256 58 12 chr9 8449672 8449844 -133821600 + L1M4 LINE L1 4253 4432 -1714 2362 78 0 10 chr9 8449902 8450208 -133821236 + AluY SINE Alu 1 303 -8 32783 36 40 2 chr9 8450217 8454529 -133816915 - L1PA3 LINE L1 -1052 5094 615 7623 27 2 0 chr9 8454529 8455575 -133815869 + L1PA3 LINE L1 5107 6154 -1 318 226 137 0 chr9 8455666 8455768 -133815676 - L1M4 LINE L1 -1428 4718 4603 311 309 122 11 chr9 8456168 8456356 -133815088 + MLT1J2 LTR MaLR 1 209 -241 276 293 39 34 chr9 8456562 8456770 -133814674 + L1MEd LINE L1 1025 1233 -4886 28 71 0 0 chr9 8457254 8457310 -133814134 + AT_rich Low_complexity Low_complexity 1 56 0 418 68 81 25 chr9 8457356 8457517 -133813927 + (TA)n Simple_repeat Simple_repeat 1 170 0 232 167 28 28 chr9 8457526 8457598 -133813846 + (ATATG)n Simple_repeat Simple_repeat 4 75 0 282 142 47 9 chr9 8457623 8457729 -133813715 + (TA)n Simple_repeat Simple_repeat 1 110 0 304 254 14 0 chr9 8459218 8459289 -133812155 - MER112 DNA MER1_type -7 253 182 180 359 77 8 chr9 8459875 8459992 -133811452 - MIR SINE MIR -73 189 65 2061 126 6 25 chr9 8460807 8461124 -133810320 - AluSx SINE Alu -1 311 1 2101 141 21 26 chr9 8462661 8463038 -133808406 + THE1C LTR MaLR 1 375 0 10215 129 5 33 chr9 8463038 8464663 -133806781 + THE1C-int LTR MaLR 1 1580 0 1571 166 16 75 chr9 8464663 8465048 -133806396 + THE1C LTR MaLR 1 362 -13 24102 140 14 22 chr9 8466605 8473086 -133798358 + L1PA8 LINE L1 4 6484 -3 833 289 56 0 chr9 8473680 8473912 -133797532 + MIR SINE MIR 13 257 -5 1147 189 81 7 chr9 8474376 8474673 -133796771 - MER33 DNA MER1_type -5 319 1 1703 163 52 35 chr9 8475193 8475561 -133795883 - THE1C LTR MaLR 0 375 2 389 302 93 54 chr9 8476750 8477008 -133794436 - L2 LINE L2 -51 3262 2995 2501 74 3 0 chr9 8477176 8477486 -133793958 + AluY SINE Alu 1 311 0 2362 100 7 0 chr9 8477627 8477928 -133793516 - AluY SINE Alu -8 303 1 2376 103 0 0 chr9 8477962 8478273 -133793171 + AluY SINE Alu 1 311 0 2118 122 54 20 chr9 8478472 8478824 -133792620 - THE1B LTR MaLR 0 364 1 936 56 0 0 chr9 8478824 8478950 -133792494 - THE1B-int LTR MaLR 0 1580 1455 1945 138 62 34 chr9 8478964 8479318 -133792126 - THE1B LTR MaLR 0 364 1 498 238 0 62 chr9 8479318 8479478 -133791966 - MLT2D LTR ERVL -83 331 182 583 342 155 47 chr9 8479478 8480638 -133790806 - L2 LINE L2 -715 2599 1314 21 0 0 0 chr9 8481935 8481956 -133789488 + AT_rich Low_complexity Low_complexity 1 21 0 923 199 30 10 chr9 8482054 8482255 -133789189 - MER20 DNA MER1_type -14 205 1 722 333 48 18 chr9 8482589 8482989 -133788455 + L2 LINE L2 2465 2876 -438 400 206 7 110 chr9 8483108 8483254 -133788190 + L2 LINE L2 3183 3313 0 205 222 19 0 chr9 8483497 8483551 -133787893 + (TAAA)n Simple_repeat Simple_repeat 2 56 0 218 227 0 0 chr9 8484037 8484081 -133787363 + (TAA)n Simple_repeat Simple_repeat 3 46 0 222 221 143 13 chr9 8484458 8484535 -133786909 - MIR SINE MIR -56 206 120 184 351 0 0 chr9 8484922 8484999 -133786445 - MIR SINE MIR -25 237 161 1028 251 8 8 chr9 8485008 8485259 -133786185 + MIR SINE MIR 12 262 0 609 245 48 0 chr9 8485258 8485405 -133786039 - MIR SINE MIR -105 157 4 * 1656 209 39 64 chr9 8485485 8486001 -133785443 + MLT1D LTR MaLR 1 503 -2 337 291 131 6 chr9 8486331 8486498 -133784946 + MIR3 SINE MIR 9 192 -64 309 300 60 8 chr9 8486533 8486666 -133784778 - MIR SINE MIR -65 143 34 35 24 0 0 chr9 8487466 8487508 -133783936 + AT_rich Low_complexity Low_complexity 1 42 0 196 327 87 39 chr9 8487911 8488015 -133783429 - L2 LINE L2 0 3313 3205 579 281 27 65 chr9 8488426 8488611 -133782833 - MIR SINE MIR -78 184 7 982 244 133 10 chr9 8490918 8491308 -133780136 + L1ME2 LINE L1 5726 6163 -1 560 259 105 46 chr9 8491784 8492023 -133779421 - MIR SINE MIR 0 262 10 541 192 0 56 chr9 8492448 8492573 -133778871 - MLT1C LTR MaLR 0 467 350 2596 139 38 24 chr9 8492623 8493121 -133778323 - L1MA7 LINE L1 0 6291 5787 470 145 0 0 chr9 8493121 8493197 -133778247 + L1MA7 LINE L1 5732 5807 -505 620 259 44 74 chr9 8493233 8493406 -133778038 - MLT1C LTR MaLR -205 262 98 2371 84 10 0 chr9 8493406 8493714 -133777730 - AluSq SINE Alu 0 313 3 620 259 44 74 chr9 8493714 8493810 -133777634 - MLT1C LTR MaLR -369 98 1 205 103 0 51 chr9 8495038 8495077 -133776367 + (TTCA)n Simple_repeat Simple_repeat 3 39 0 2070 93 0 5 chr9 8495897 8496189 -133775255 + L1PB1 LINE L1 5859 6146 -5 355 342 32 19 chr9 8496401 8496556 -133774888 + L2 LINE L2 3116 3272 0 337 271 150 15 chr9 8497204 8497337 -133774107 + MIR SINE MIR 30 180 -82 1002 221 149 24 chr9 8497365 8497791 -133773653 + MLT1D LTR MaLR 12 390 0 28 0 0 0 chr9 8498595 8498623 -133772821 + AT_rich Low_complexity Low_complexity 1 28 0 186 167 0 0 chr9 8499845 8499881 -133771563 + A-rich Low_complexity Low_complexity 2 37 0 2008 157 0 40 chr9 8500213 8500564 -133770880 - MER1B DNA MER1_type 0 337 1 386 318 75 19 chr9 8500678 8500857 -133770587 - MIR SINE MIR -64 144 6 363 326 70 32 chr9 8501090 8501277 -133770167 + MIR SINE MIR 4 197 -65 1240 199 45 87 chr9 8501583 8501964 -133769480 - MLT1A1 LTR MaLR 0 365 1 291 303 174 17 chr9 8502590 8502831 -133768613 + L1MC/D LINE L1 5294 5572 -2236 916 222 4 78 chr9 8502831 8502988 -133768456 + MLT1A1 LTR MaLR 1 133 -232 1807 174 0 10 chr9 8502988 8503293 -133768151 + AluJo SINE Alu 1 302 -10 916 222 4 78 chr9 8503293 8503392 -133768052 + MLT1A1 LTR MaLR 133 238 -127 489 306 41 0 chr9 8504625 8504772 -133766672 + MIR3 SINE MIR 50 202 -6 238 282 24 12 chr9 8505130 8505215 -133766229 - LTR16A1 LTR ERVL -25 432 347 682 271 107 27 chr9 8506332 8506500 -133764944 + LTR16C LTR ERVL 209 407 -84 756 164 99 6 chr9 8506500 8506671 -133764773 - MER53 DNA DNA 0 189 3 682 271 107 27 chr9 8506671 8506764 -133764680 + LTR16C LTR ERVL 407 491 0 509 284 52 90 chr9 8506908 8507274 -133764170 + MLT1J LTR MaLR 158 509 -2 249 333 0 29 chr9 8507326 8507395 -133764049 + L2 LINE L2 3009 3075 -238 204 330 144 0 chr9 8507446 8507543 -133763901 + MIR SINE MIR 152 262 0 2051 142 3 3 chr9 8507822 8508125 -133763319 + AluSg SINE Alu 1 303 -7 219 180 0 20 chr9 8508127 8508177 -133763267 + (ATTG)n Simple_repeat Simple_repeat 4 52 0 394 261 9 0 chr9 8508180 8508295 -133763149 + L1MC4 LINE L1 7922 8037 -5 256 220 186 0 chr9 8508342 8508401 -133763043 - MIR3 SINE MIR -48 160 91 223 305 0 0 chr9 8510084 8510143 -133761301 + (CA)n Simple_repeat Simple_repeat 2 60 0 302 298 165 0 chr9 8510158 8510279 -133761165 - L2 LINE L2 -12 3301 3161 1598 203 11 44 chr9 8510407 8510767 -133760677 + MER7A DNA MER2_type 1 346 0 193 377 57 16 chr9 8511162 8511284 -133760160 - L2 LINE L2 -9 3263 3137 566 345 22 9 chr9 8511400 8511632 -133759812 - MIR SINE MIR -10 252 18 1843 175 63 26 chr9 8511690 8512072 -133759372 - MSTD LTR MaLR 0 396 1 258 229 0 0 chr9 8512446 8512516 -133758928 + GA-rich Low_complexity Low_complexity 3 72 0 685 281 54 40 chr9 8513376 8513600 -133757844 - MIR SINE MIR -18 244 18 562 275 39 28 chr9 8513654 8513832 -133757612 + MLT1K LTR MaLR 26 205 -383 451 265 113 63 chr9 8513835 8514073 -133757371 + MLT1K LTR MaLR 331 580 -8 1907 197 14 3 chr9 8514418 8514769 -133756675 - MLT1A1 LTR MaLR 0 365 11 1573 214 27 24 chr9 8514784 8515157 -133756287 + MLT1A2 LTR MaLR 1 374 0 188 200 22 22 chr9 8515367 8515412 -133756032 + L2 LINE L2 3264 3308 -5 2343 167 151 10 chr9 8515435 8515697 -133755747 - MLT2B3 LTR ERVL 0 554 330 203 0 37 0 chr9 8515697 8515724 -133755720 + (GA)n Simple_repeat Simple_repeat 2 29 0 2343 167 151 10 chr9 8515724 8515945 -133755499 - MLT2B3 LTR ERVL -224 330 3 215 227 0 0 chr9 8516041 8516085 -133755359 + (TATG)n Simple_repeat Simple_repeat 1 44 0 507 33 0 0 chr9 8516087 8516148 -133755296 + (TCTA)n Simple_repeat Simple_repeat 4 64 0 420 269 40 86 chr9 8516932 8517107 -133754337 + MER63A DNA MER1_type 44 210 0 23 0 0 0 chr9 8517406 8517429 -133754015 + AT_rich Low_complexity Low_complexity 1 23 0 210 135 19 39 chr9 8518092 8518144 -133753300 + GA-rich Low_complexity Low_complexity 2 52 0 358 252 74 0 chr9 8518333 8518468 -133752976 + L1ME4a LINE L1 5690 5834 -287 1384 230 48 19 chr9 8518541 8518985 -133752459 + L1ME1 LINE L1 5688 6137 -27 303 253 100 65 chr9 8518990 8519019 -133752425 + L1ME4a LINE L1 5879 5906 -215 1811 178 45 17 chr9 8519019 8519374 -133752070 - MLT1A1 LTR MaLR 0 365 1 303 253 100 65 chr9 8519374 8519514 -133751930 + L1ME4a LINE L1 5906 6054 -67 239 276 13 13 chr9 8519562 8519638 -133751806 + (TCTA)n Simple_repeat Simple_repeat 3 78 0 23 54 0 0 chr9 8520106 8520143 -133751301 + AT_rich Low_complexity Low_complexity 1 37 0 203 291 219 40 chr9 8520199 8520350 -133751094 - MIR SINE MIR -84 178 1 2731 29 3 0 chr9 8521630 8521940 -133749504 - AluY SINE Alu 0 311 1 189 226 0 0 chr9 8521979 8522032 -133749412 + (TA)n Simple_repeat Simple_repeat 2 54 0 388 135 135 0 chr9 8524457 8524531 -133746913 - MLT1B LTR MaLR -305 85 2 212 253 0 131 chr9 8524721 8524820 -133746624 - MIR SINE MIR -89 173 88 488 333 64 5 chr9 8526104 8526308 -133745136 - MIR SINE MIR 0 262 47 415 238 25 16 chr9 8527137 8527259 -133744185 - L1ME3A LINE L1 -284 5886 5764 21 0 0 0 chr9 8527622 8527643 -133743801 + AT_rich Low_complexity Low_complexity 1 21 0 321 264 110 12 chr9 8527970 8528157 -133743287 - L1ME3 LINE L1 -289 5873 5665 659 302 74 20 chr9 8528221 8529007 -133742437 - L1ME3 LINE L1 -649 5513 4677 417 293 91 55 chr9 8529073 8529636 -133741808 - L1ME3 LINE L1 -1952 4194 3612 341 278 137 67 chr9 8529723 8530007 -133741437 - L1ME3 LINE L1 -2611 3535 3232 2718 84 16 11 chr9 8530187 8530558 -133740886 + THE1C LTR MaLR 1 373 -2 4666 67 2 2 chr9 8532456 8533057 -133738387 - L1PA7 LINE L1 0 6154 5554 29 47 0 0 chr9 8533064 8533107 -133738337 + AT_rich Low_complexity Low_complexity 1 43 0 789 217 56 28 chr9 8533907 8534087 -133737357 - MER3 DNA MER1_type -24 185 1 181 270 0 0 chr9 8534347 8534384 -133737060 + L2 LINE L2 3256 3292 -21 299 219 37 0 chr9 8534394 8534476 -133736968 - LTR50 LTR ERVL 0 795 711 1141 245 133 28 chr9 8534502 8535000 -133736444 - LTR50 LTR ERVL -142 653 1 3005 201 98 28 chr9 8535131 8536568 -133734876 + L1MB5 LINE L1 4304 5851 -323 182 235 0 0 chr9 8536644 8536678 -133734766 - L2 LINE L2 -6 3266 3233 499 257 151 29 chr9 8536680 8536886 -133734558 - MIR SINE MIR 0 262 32 201 368 15 0 chr9 8537827 8537895 -133733549 + MIR SINE MIR 54 122 -86 24 96 0 0 chr9 8537926 8537999 -133733445 + AT_rich Low_complexity Low_complexity 1 73 0 466 371 0 10 chr9 8538003 8538197 -133733247 - MIR SINE MIR -13 249 58 193 279 29 44 chr9 8538289 8538357 -133733087 + L2 LINE L2 3194 3260 -12 246 213 0 0 chr9 8538942 8538989 -133732455 + (TG)n Simple_repeat Simple_repeat 2 48 0 25 75 0 0 chr9 8538989 8539042 -133732402 + AT_rich Low_complexity Low_complexity 1 53 0 1584 205 46 10 chr9 8540501 8540852 -133730592 + MLT1A1 LTR MaLR 1 418 -10 255 333 26 9 chr9 8541165 8541279 -133730165 - MIR SINE MIR -55 207 92 243 295 109 12 chr9 8541596 8541918 -133729526 - L1MEc LINE L1 -2169 4046 3694 249 303 79 0 chr9 8541949 8542025 -133729419 + L2 LINE L2 3192 3273 -40 209 204 0 20 chr9 8542045 8542094 -133729350 + GA-rich Low_complexity Low_complexity 3 50 0 993 325 88 45 chr9 8542161 8543285 -133728159 - L1MEc LINE L1 -2659 3556 2384 531 220 15 38 chr9 8543482 8543614 -133727830 + FLAM_A SINE Alu 8 136 -6 313 318 136 15 chr9 8543660 8543924 -133727520 - L1MEc LINE L1 -3998 2398 2103 1505 168 44 54 chr9 8544619 8544916 -133726528 - AluJo SINE Alu -13 299 6 261 244 73 49 chr9 8544986 8545109 -133726335 - HAL1 LINE L1 -1151 1356 1231 23 54 0 0 chr9 8545253 8545290 -133726154 + AT_rich Low_complexity Low_complexity 1 37 0 279 310 23 11 chr9 8546025 8546112 -133725332 + MIR SINE MIR 57 144 -64 234 91 0 0 chr9 8547393 8547426 -133724018 + (T)n Simple_repeat Simple_repeat 1 33 0 207 0 0 0 chr9 8547747 8547770 -133723674 + (CA)n Simple_repeat Simple_repeat 2 24 0 430 243 13 185 chr9 8548566 8548866 -133722578 + MIR SINE MIR 4 248 -14 225 178 0 0 chr9 8549011 8549056 -133722388 + (CA)n Simple_repeat Simple_repeat 1 45 0 231 356 30 0 chr9 8550278 8550410 -133721034 + LTR16A LTR ERVL 13 148 -302 253 321 44 50 chr9 8551880 8552101 -133719343 - MIR3 SINE MIR -34 228 14 802 297 38 4 chr9 8552924 8553187 -133718257 + L2 LINE L2 2896 3167 -146 539 286 124 0 chr9 8553208 8553369 -133718075 + MIR SINE MIR 13 193 -69 486 304 0 14 chr9 8553416 8553554 -133717890 + L2 LINE L2 3178 3313 0 2602 163 5 66 chr9 8554774 8555346 -133716098 + MER74A LTR ERVL 1 537 -21 1111 188 39 0 chr9 8555810 8556018 -133715426 + MER58A DNA MER1_type 1 216 -8 2102 113 0 3 chr9 8556396 8556704 -133714740 + AluSq SINE Alu 1 307 0 351 130 0 0 chr9 8556877 8556931 -133714513 + MER20 DNA MER1_type 31 84 -135 6579 156 12 21 chr9 8556979 8558482 -133712962 - Ricksha DNA DNA -13 3238 1711 592 152 16 24 chr9 8558468 8558593 -133712851 - Ricksha DNA DNA -1049 132 9 * 497 224 9 0 chr9 8558612 8558719 -133712725 + MER20 DNA MER1_type 107 214 -5 180 240 135 31 chr9 8558724 8558820 -133712624 + MIR SINE MIR 102 207 -55 21 36 0 0 chr9 8558854 8558882 -133712562 + AT_rich Low_complexity Low_complexity 1 28 0 712 174 52 0 chr9 8559817 8559932 -133711512 - FLAM_A SINE Alu -9 124 4 196 392 13 0 chr9 8562604 8562683 -133708761 + L2 LINE L2 3164 3243 -29 428 266 16 23 chr9 8562844 8562972 -133708472 - MIR SINE MIR -21 241 115 216 202 26 26 chr9 8563055 8563169 -133708275 + (TA)n Simple_repeat Simple_repeat 2 115 0 459 224 0 112 chr9 8563324 8563458 -133707986 - MIR3 SINE MIR -46 162 44 227 217 49 105 chr9 8563648 8563791 -133707653 + L2 LINE L2 2878 3012 -260 486 227 109 0 chr9 8563896 8564006 -133707438 + MER45A DNA AcHobo 57 178 0 248 297 81 0 chr9 8564065 8564139 -133707305 + L2 LINE L2 3136 3215 -57 240 352 16 39 chr9 8564968 8565071 -133706373 - L2 LINE L2 -7 3306 3207 894 223 9 40 chr9 8565071 8565295 -133706149 + MIR SINE MIR 2 218 -44 2121 133 7 0 chr9 8565779 8566088 -133705356 - AluSx SINE Alu 0 312 2 2264 101 0 16 chr9 8566161 8566468 -133704976 - AluSg SINE Alu -8 302 1 2013 137 21 6 chr9 8568151 8568487 -133702957 + L1P4 LINE L1 5393 5733 -432 1463 214 31 26 chr9 8568538 8568922 -133702522 - MER89 LTR ERV1 0 559 174 318 143 32 0 chr9 8568922 8568985 -133702459 - MER89 LTR ERV1 -494 65 1 995 150 56 100 chr9 8569026 8569106 -133702338 + MER33 DNA MER1_type 1 83 -2502 2215 71 0 52 chr9 8569106 8569416 -133702028 + AluY SINE Alu 1 294 -17 995 150 56 100 chr9 8569416 8569674 -133701770 + MER33 DNA MER1_type 83 324 0 413 322 17 0 chr9 8573599 8573714 -133697730 + MIR3 SINE MIR 86 202 -6 28 48 0 0 chr9 8574103 8574145 -133697299 + AT_rich Low_complexity Low_complexity 1 42 0 262 239 103 77 chr9 8575321 8575438 -133696006 - MER20B DNA MER1_type -607 176 57 1991 165 123 8 chr9 8575929 8576311 -133695133 - MSTA LTR MaLR 0 428 3 1648 171 3 58 chr9 8576534 8576712 -133694732 - AluJo SINE Alu -2 310 157 1996 144 17 0 chr9 8576712 8577003 -133694441 - AluSx SINE Alu -16 296 1 1648 171 3 58 chr9 8577003 8577151 -133694293 - AluJo SINE Alu -155 157 2 442 326 47 23 chr9 8577421 8577593 -133693851 - MIR SINE MIR -50 212 37 201 310 42 0 chr9 8577814 8577885 -133693559 - MIR3 SINE MIR -11 197 124 363 277 97 13 chr9 8577886 8578041 -133693403 + MLT1J2 LTR MaLR 1 168 -282 228 86 0 0 chr9 8578062 8578097 -133693347 + (TCTCTG)n Simple_repeat Simple_repeat 2 36 0 28 29 0 0 chr9 8578181 8578216 -133693228 + AT_rich Low_complexity Low_complexity 1 35 0 820 192 7 0 chr9 8578223 8578369 -133693075 - AluJb SINE Alu -30 282 136 260 243 0 27 chr9 8578383 8578457 -133692987 + MLT1I LTR MaLR 336 407 -2 486 272 97 20 chr9 8579202 8579426 -133692018 + L1M4b LINE L1 11 549 -6306 1121 267 40 14 chr9 8579539 8579959 -133691485 + L1ME1 LINE L1 5731 6161 -5 184 283 321 9 chr9 8580173 8580279 -133691165 - MIR3 SINE MIR -16 192 54 269 294 147 45 chr9 8580857 8581034 -133690410 + MIR SINE MIR 7 201 -61 227 343 95 0 chr9 8581589 8581694 -133689750 + L2 LINE L2 3150 3264 -8 1882 127 25 28 chr9 8583230 8583513 -133687931 - AluY SINE Alu -29 282 1 23 0 0 0 chr9 8585587 8585610 -133685834 + AT_rich Low_complexity Low_complexity 1 23 0 2088 117 7 3 chr9 8585706 8586021 -133685423 - AluSq SINE Alu 0 316 1 22 56 0 0 chr9 8587361 8587397 -133684047 + AT_rich Low_complexity Low_complexity 1 36 0 183 292 167 31 chr9 8587872 8587968 -133683476 - L2 LINE L2 -1 3312 3204 328 367 130 18 chr9 8588621 8589013 -133682431 - L2 LINE L2 0 3272 2837 1259 123 36 5 chr9 8589163 8589382 -133682062 - L1MA8 LINE L1 -5 6286 6061 38561 69 10 8 chr9 8589389 8595484 -133675960 - L1PA3 LINE L1 -3 6152 44 4132 145 9 0 chr9 8595484 8596298 -133675146 - L1MA8 LINE L1 -744 5402 4450 1655 154 0 0 chr9 8596324 8596596 -133674848 - L1MA8 LINE L1 -1800 4346 4075 1210 168 15 0 chr9 8596817 8597020 -133674424 + L1PA15 LINE L1 5939 6144 -21 338 314 128 21 chr9 8597436 8597678 -133673766 - LTR33A LTR ERVL -129 394 127 1175 226 146 45 chr9 8597912 8598289 -133673155 + LTR48 LTR ERV1 1 415 -372 574 178 34 126 chr9 8598292 8598561 -133672883 + LTR48 LTR ERV1 544 787 0 266 263 52 0 chr9 8599511 8599614 -133671830 - Charlie8 DNA MER1_type -1014 1403 203 223 277 89 50 chr9 8599645 8599746 -133671698 - L2 LINE L2 -283 3030 2926 598 245 0 73 chr9 8599746 8599791 -133671653 - MER5B DNA MER1_type 0 178 131 2537 81 0 0 chr9 8599791 8600100 -133671344 - AluSx SINE Alu -3 309 1 598 245 0 73 chr9 8600100 8600246 -133671198 - MER5B DNA MER1_type -47 131 1 240 326 11 11 chr9 8600252 8600341 -133671103 - Charlie8 DNA MER1_type -2201 216 128 281 262 72 42 chr9 8600829 8601066 -133670378 + L1ME4a LINE L1 5872 6115 -6 282 29 0 0 chr9 8601116 8601151 -133670293 + (TG)n Simple_repeat Simple_repeat 2 36 0 216 0 0 0 chr9 8601209 8601233 -133670211 + (TGAA)n Simple_repeat Simple_repeat 3 26 0 280 230 81 23 chr9 8602085 8602172 -133669272 - MIR3 SINE MIR -50 158 67 1651 166 60 21 chr9 8603257 8603570 -133667874 - MER2 DNA MER2_type 0 345 17 2423 127 27 78 chr9 8603570 8604019 -133667425 - MSTB LTR MaLR 0 426 1 1651 166 60 21 chr9 8604019 8604037 -133667407 - MER2 DNA MER2_type -328 17 1 227 228 35 0 chr9 8604104 8604161 -133667283 - MLT1J LTR MaLR -30 481 423 266 308 0 0 chr9 8604466 8604531 -133666913 + L3b LINE CR1 1276 1340 -243 7998 25 2 2 chr9 8604674 8606392 -133665052 - L1PA3 LINE L1 -1 6154 4437 886 9 0 0 chr9 8606392 8606499 -133664945 + L1PA3 LINE L1 4326 4432 -1714 193 245 0 38 chr9 8606715 8606768 -133664676 - L2 LINE L2 0 3313 3263 198 71 0 0 chr9 8607891 8607919 -133663525 + (TA)n Simple_repeat Simple_repeat 2 29 0 260 222 69 0 chr9 8608808 8608880 -133662564 - MIR SINE MIR -88 174 98 8349 130 16 1 chr9 8609140 8610409 -133661035 + HSMAR2 DNA Mariner 5 1292 -10 363 325 80 51 chr9 8610865 8611216 -133660228 + L2 LINE L2 2535 2895 -419 301 369 0 39 chr9 8611379 8611509 -133659935 + L2 LINE L2 3133 3257 -15 460 243 59 64 chr9 8611523 8611587 -133659857 - MIR SINE MIR -3 259 196 2247 192 12 19 chr9 8611587 8611820 -133659624 - MSTB LTR MaLR -2 424 194 1395 234 3 23 chr9 8611820 8612123 -133659321 - AluJb SINE Alu -15 297 1 2247 192 12 19 chr9 8612123 8612316 -133659128 - MSTB LTR MaLR -232 194 1 460 243 59 64 chr9 8612316 8612472 -133658972 - MIR SINE MIR -66 196 40 208 253 220 22 chr9 8613590 8613681 -133657763 + MIR SINE MIR 36 144 -118 181 314 114 38 chr9 8613803 8613908 -133657536 + L3b LINE CR1 1296 1408 -175 804 139 0 39 chr9 8613960 8614089 -133657355 - FLAM_C SINE Alu -19 124 1 218 242 16 16 chr9 8615055 8615117 -133656327 + L2 LINE L2 3251 3312 -1 758 263 124 0 chr9 8615224 8615441 -133656003 + MIR SINE MIR 14 257 -5 205 281 158 23 chr9 8615515 8615784 -133655660 - L2 LINE L2 0 3272 2928 851 201 36 82 chr9 8615853 8616072 -133655372 - MER20 DNA MER1_type -10 209 1 183 379 81 0 chr9 8617497 8617621 -133653823 + L3b LINE CR1 1377 1510 -73 186 167 0 0 chr9 8618196 8618232 -133653212 + (TG)n Simple_repeat Simple_repeat 2 37 0 317 266 38 0 chr9 8618824 8618903 -133652541 + L2 LINE L2 3190 3271 -1 402 100 0 0 chr9 8619771 8619831 -133651613 + (TG)n Simple_repeat Simple_repeat 2 61 0 1242 218 157 11 chr9 8620677 8621302 -133650142 - LTR50 LTR ERVL 0 795 5 296 396 132 7 chr9 8621708 8621852 -133649592 + MER91A DNA MER1_type 34 195 -1 194 263 70 0 chr9 8621883 8621940 -133649504 + L2 LINE L2 3006 3066 -206 1286 211 34 4 chr9 8622328 8622757 -133648687 + L1MB8 LINE L1 5137 5578 -596 2020 132 140 8 chr9 8622766 8623144 -133648300 - MSTA LTR MaLR 0 428 1 8968 168 19 31 chr9 8623149 8624814 -133646630 - MSTA-int LTR MaLR -6 1645 1 2250 127 99 10 chr9 8624814 8625207 -133646237 - MSTA LTR MaLR 0 428 1 1469 176 35 6 chr9 8625207 8625526 -133645918 + L1MB8 LINE L1 5583 5910 -268 398 145 0 0 chr9 8625528 8625590 -133645854 - MADE1 DNA Mariner -18 62 1 394 228 11 5 chr9 8625590 8625778 -133645666 + L1MB8 LINE L1 5908 6172 -6 400 349 24 8 chr9 8626000 8626126 -133645318 - L2 LINE L2 0 3272 3145 761 326 143 33 chr9 8626175 8626777 -133644667 - L2 LINE L2 -653 2661 1994 241 174 0 0 chr9 8627091 8627137 -133644307 - L1MB1 LINE L1 -1 6167 6122 2801 110 19 14 chr9 8627139 8627567 -133643877 - L1PA16 LINE L1 0 6166 5737 3100 149 5 13 chr9 8627567 8628362 -133643082 + L1PA16 LINE L1 4949 5737 -429 473 162 108 0 chr9 8628360 8628471 -133642973 - L1MB1 LINE L1 -39 6129 6007 * 841 180 19 0 chr9 8628475 8628636 -133642808 - L1MB1 LINE L1 -236 5932 5769 * 24463 63 5 2 chr9 8628635 8632603 -133638841 - L1PA6 LINE L1 0 6154 2175 3852 131 29 3 chr9 8632603 8633222 -133638222 - MER11B LTR ERVK -601 635 1 4825 167 34 5 chr9 8633222 8634728 -133636716 - L1PA14 LINE L1 -332 6480 4935 5285 167 19 10 chr9 8634730 8636296 -133635148 + L1PB1 LINE L1 4573 6143 -8 11262 199 39 32 chr9 8636311 8640533 -133630911 - L1PA14 LINE L1 -1851 4946 728 279 0 0 0 chr9 8640533 8640564 -133630880 + (CA)n Simple_repeat Simple_repeat 1 31 0 11262 199 39 32 chr9 8640564 8641173 -133630271 - L1PA14 LINE L1 -6069 728 125 2294 272 71 28 chr9 8641178 8642517 -133628927 - L1M4 LINE L1 -2478 3668 2273 27 0 0 0 chr9 8642599 8642626 -133628818 + AT_rich Low_complexity Low_complexity 1 27 0 203 0 37 0 chr9 8643102 8643129 -133628315 + (TTA)n Simple_repeat Simple_repeat 3 30 0 278 267 139 10 chr9 8644426 8644527 -133626917 + LTR16A LTR ERVL 337 450 0 255 176 68 27 chr9 8644528 8644602 -133626842 + MLT1K LTR MaLR 496 572 -16 832 166 21 100 chr9 8644879 8645120 -133626324 - L1MA4A LINE L1 -114 6189 5968 * 1627 51 0 0 chr9 8645097 8645312 -133626132 - L1P2 LINE L1 -644 5510 5296 * 1652 121 18 33 chr9 8645303 8645575 -133625869 + L1M1 LINE L1 5465 5732 -571 * 12292 218 55 22 chr9 8645573 8647627 -133623817 - L1 LINE L1 -842 6006 4023 234 0 0 0 chr9 8647627 8647653 -133623791 + (TTTG)n Simple_repeat Simple_repeat 2 27 0 12292 218 55 22 chr9 8647653 8649536 -133621908 - L1 LINE L1 -2825 4023 1908 3659 202 61 13 chr9 8649544 8650309 -133621135 - L1 LINE L1 -6067 782 2 388 222 5 62 chr9 8651082 8651191 -133620253 - MLT2E LTR ERVL -336 185 36 24 0 0 0 chr9 8651458 8651482 -133619962 + AT_rich Low_complexity Low_complexity 1 24 0 201 268 0 36 chr9 8652384 8652440 -133619004 + GA-rich Low_complexity Low_complexity 4 57 0 437 315 56 29 chr9 8653165 8653718 -133617726 - L1MC4a LINE L1 -846 5445 5297 286 245 170 34 chr9 8653805 8654070 -133617374 - L1MC4a LINE L1 -1773 4373 4073 2429 77 3 3 chr9 8654136 8654447 -133616997 - AluY SINE Alu 0 311 1 321 306 32 64 chr9 8654451 8654670 -133616774 - L1MC4a LINE L1 -2117 4029 3818 723 119 24 8 chr9 8654694 8654820 -133616624 - L1MA5A LINE L1 -4 6293 6166 2716 125 26 9 chr9 8654849 8655304 -133616140 - L1PA16 LINE L1 -9 6157 5695 5483 245 66 25 chr9 8655306 8656071 -133615373 - L1M4 LINE L1 -758 5388 4656 1702 187 0 22 chr9 8656071 8656386 -133615058 - AluJo SINE Alu 0 312 5 5483 245 66 25 chr9 8656386 8657893 -133613551 - L1M4 LINE L1 -1490 4656 2762 287 266 64 0 chr9 8658096 8658190 -133613254 - L1PA12 LINE L1 -5398 2183 2084 914 343 20 51 chr9 8658289 8658922 -133612522 - L1PA12 LINE L1 -6173 1401 788 227 272 52 81 chr9 8658951 8659124 -133612320 - L1MC4a LINE L1 -2342 3804 3637 253 328 55 55 chr9 8659168 8659351 -133612093 - MER5A DNA MER1_type -2 187 5 1504 319 83 25 chr9 8659421 8660238 -133611206 + HAL1 LINE L1 10 874 -1633 185 62 0 31 chr9 8660247 8660279 -133611165 + (TTTTA)n Simple_repeat Simple_repeat 1 31 0 3415 25 0 0 chr9 8660279 8660674 -133610770 - L1PA4 LINE L1 -24 6131 5737 363 0 0 0 chr9 8660671 8660711 -133610733 + L1P2 LINE L1 5618 5657 -498 * 461 238 115 73 chr9 8660707 8661282 -133610162 + HAL1 LINE L1 863 1461 -1046 456 318 40 0 chr9 8661282 8661430 -133610014 + L2 LINE L2 3160 3313 0 381 316 36 14 chr9 8661621 8661760 -133609684 - L3 LINE CR1 -8 1569 1428 2030 130 0 0 chr9 8662234 8662511 -133608933 - AluSq SINE Alu -15 298 22 339 270 132 7 chr9 8662774 8662926 -133608518 + MIR3 SINE MIR 31 201 -7 1997 112 13 16 chr9 8662972 8663275 -133608169 - AluSq SINE Alu -11 302 1 293 306 50 16 chr9 8663674 8663795 -133607649 + MIR3 SINE MIR 8 132 -76 200 231 19 19 chr9 8663952 8664004 -133607440 - L2 LINE L2 -8 3305 3254 415 232 141 68 chr9 8664522 8664699 -133606745 - MIR SINE MIR -24 238 49 4627 88 8 8 chr9 8664952 8665602 -133605842 + L1PA10 LINE L1 5519 6168 0 302 186 253 98 chr9 8665640 8665834 -133605610 + MLT1H LTR MaLR 1 224 -325 2388 151 45 0 chr9 8665873 8666270 -133605174 - MSTB LTR MaLR -11 415 1 36842 98 6 6 chr9 8666479 8672625 -133598819 - L1PA6 LINE L1 -4 6150 11 1986 111 0 14 chr9 8673592 8673871 -133597573 + AluSc SINE Alu 1 275 -34 756 32 0 0 chr9 8673871 8673966 -133597478 + (TC)n Simple_repeat Simple_repeat 2 96 0 2485 56 0 3 chr9 8674054 8674359 -133597085 + AluY SINE Alu 1 304 -7 1745 44 0 31 chr9 8674529 8674757 -133596687 + L1PA5 LINE L1 5928 6148 -6 203 211 0 0 chr9 8675280 8675318 -133596126 - MIR SINE MIR -72 136 99 264 170 0 0 chr9 8675425 8675478 -133595966 + (TATG)n Simple_repeat Simple_repeat 2 54 0 353 292 175 38 chr9 8675818 8676212 -133595232 + MLT1L LTR MaLR 166 613 -2 216 261 0 0 chr9 8676409 8676455 -133594989 - MER5A DNA MER1_type -128 61 16 234 174 0 0 chr9 8676582 8676628 -133594816 + (ATG)n Simple_repeat Simple_repeat 3 48 0 788 277 38 34 chr9 8676657 8676809 -133594635 + MIR SINE MIR 7 162 -100 1899 148 49 25 chr9 8676809 8677175 -133594269 + THE1C LTR MaLR 1 375 0 788 277 38 34 chr9 8677175 8677257 -133594187 + MIR SINE MIR 162 242 -20 323 260 79 0 chr9 8679143 8679270 -133592174 - L1ME4a LINE L1 -50 6071 5935 350 299 216 0 chr9 8680867 8681001 -133590443 - MER5A DNA MER1_type -2 187 25 2750 20 0 0 chr9 8682165 8682468 -133588976 + AluY SINE Alu 1 303 -8 595 324 29 0 chr9 8683885 8684055 -133587389 + MIR3 SINE MIR 19 193 -15 10675 200 27 41 chr9 8684553 8685009 -133586435 - L1PA16 LINE L1 0 6166 5705 2584 108 14 3 chr9 8685009 8685379 -133586065 - THE1C LTR MaLR -1 374 1 10675 200 27 41 chr9 8685379 8685793 -133585651 - L1PA16 LINE L1 -461 5705 5287 3780 94 14 38 chr9 8685793 8686418 -133585026 - L1MA2 LINE L1 0 6304 5695 10675 200 27 41 chr9 8686418 8687266 -133584178 - L1PA16 LINE L1 -879 5287 4429 2316 98 0 16 chr9 8687266 8687582 -133583862 - AluY SINE Alu 0 311 1 10675 200 27 41 chr9 8687582 8689752 -133581692 - L1PA16 LINE L1 -1737 4429 2304 * 20968 47 3 1 chr9 8689742 8693164 -133578280 - L1PA5 LINE L1 0 6154 2725 209 179 39 77 chr9 8693279 8693357 -133578087 + A-rich Low_complexity Low_complexity 5 79 0 516 268 0 9 chr9 8695235 8695347 -133576097 + MIR SINE MIR 41 151 -111 210 71 0 0 chr9 8695917 8695945 -133575499 + (TA)n Simple_repeat Simple_repeat 1 28 0 301 263 131 0 chr9 8695948 8696047 -133575397 - MIR SINE MIR -25 237 126 377 265 103 0 chr9 8696383 8696500 -133574944 + Zaphod DNA AcHobo 3900 4028 -3 516 271 17 0 chr9 8696501 8696619 -133574825 - MIR SINE MIR -137 125 6 336 219 93 35 chr9 8696978 8697163 -133574281 + MIR SINE MIR 10 248 -14 580 266 83 16 chr9 8697216 8697408 -133574036 - MIR SINE MIR -1 261 57 1041 243 31 20 chr9 8697414 8697735 -133573709 - MER58B DNA MER1_type 0 341 1 1502 214 57 10 chr9 8698854 8699261 -133572183 + LTR37A LTR ERV1 1 426 0 245 325 105 26 chr9 8700815 8700929 -133570515 - L2 LINE L2 -12 3260 3138 625 355 132 20 chr9 8701481 8702338 -133569106 - L2 LINE L2 -825 2489 1537 417 225 28 84 chr9 8703956 8704098 -133567346 + MIR SINE MIR 8 141 -121 181 246 31 77 chr9 8704280 8704345 -133567099 - L2 LINE L2 -45 3268 3207 783 290 75 36 chr9 8704367 8704726 -133566718 + LTR33 LTR ERVL 149 521 0 397 339 48 16 chr9 8704865 8705051 -133566393 - MIR SINE MIR -70 192 1 493 276 6 41 chr9 8706129 8706299 -133565145 + MIR SINE MIR 29 191 -69 197 367 41 31 chr9 8708059 8708157 -133563287 - L2 LINE L2 -32 3240 3142 1140 189 42 0 chr9 8708425 8708685 -133562759 + L1MA4 LINE L1 6018 6288 -12 767 297 64 55 chr9 8708961 8709399 -133562045 - L1MEd LINE L1 -5613 506 65 503 329 70 51 chr9 8709557 8709913 -133561531 + L2 LINE L2 2939 3301 -12 537 258 22 39 chr9 8710513 8710691 -133560753 + MER5B DNA MER1_type 2 176 -2 291 337 0 0 chr9 8710768 8710860 -133560584 + L2 LINE L2 3180 3271 -1 21 36 0 0 chr9 8711746 8711774 -133559670 + AT_rich Low_complexity Low_complexity 1 28 0 369 43 0 0 chr9 8711980 8712027 -133559417 + (TAGA)n Simple_repeat Simple_repeat 3 49 0 5100 171 35 24 chr9 8713493 8714867 -133556577 - L1MA9 LINE L1 0 6312 4927 2742 136 28 29 chr9 8714857 8715488 -133555956 - L1P4 LINE L1 -425 5740 5113 * 1154 193 75 55 chr9 8715487 8715939 -133555505 - L1MA9 LINE L1 -2757 3389 2929 * 859 254 39 21 chr9 8715990 8716269 -133555175 + L1MA9 LINE L1 5987 6270 -42 4029 146 84 40 chr9 8716651 8717540 -133553904 - L1PB4 LINE L1 0 6156 5229 6154 147 17 4 chr9 8717540 8718558 -133552886 + Ricksha_c DNA DNA 906 1936 -110 333 0 0 0 chr9 8718723 8718760 -133552684 + (TC)n Simple_repeat Simple_repeat 2 38 0 321 321 0 0 chr9 8718760 8718844 -133552600 - L1MC4 LINE L1 -1341 6701 6618 21 36 0 0 chr9 8718962 8718990 -133552454 + AT_rich Low_complexity Low_complexity 1 28 0 2118 124 0 7 chr9 8719093 8719391 -133552053 + AluSx SINE Alu 1 296 -16 43 56 0 0 chr9 8719529 8719600 -133551844 + AT_rich Low_complexity Low_complexity 1 71 0 1864 117 8 4 chr9 8721277 8721542 -133549902 - AluSc SINE Alu -9 300 35 1061 266 100 35 chr9 8721673 8722185 -133549259 - MLT1H LTR MaLR 0 549 5 625 266 141 0 chr9 8722319 8722518 -133548926 + MIR SINE MIR 23 249 -13 310 266 120 20 chr9 8723686 8723820 -133547624 - MIR SINE MIR -62 146 38 279 0 0 0 chr9 8724031 8724062 -133547382 + (CA)n Simple_repeat Simple_repeat 1 31 0 2091 94 59 0 chr9 8725266 8725552 -133545892 - AluSg SINE Alu -5 305 3 359 307 90 16 chr9 8726456 8726645 -133544799 + MIR SINE MIR 49 251 -11 281 330 50 105 chr9 8727566 8727908 -133543536 - L2 LINE L2 0 3272 2950 242 332 237 12 chr9 8728175 8728512 -133542932 - L2 LINE L2 -925 2389 1977 704 270 37 68 chr9 8729179 8729534 -133541910 - MLT1H LTR MaLR -131 418 75 310 290 0 0 chr9 8729614 8729683 -133541761 + MIR SINE MIR 3 71 -191 195 196 0 65 chr9 8729735 8729781 -133541663 + MIR SINE MIR 201 243 -19 478 224 106 12 chr9 8730051 8730212 -133541232 - L1ME LINE L1 -439 5682 5507 483 18 0 0 chr9 8732024 8732080 -133539364 + (TA)n Simple_repeat Simple_repeat 2 57 0 1971 186 21 8 chr9 8732158 8732539 -133538905 + MLT1B LTR MaLR 3 388 -2 24 32 0 0 chr9 8732601 8732632 -133538812 + AT_rich Low_complexity Low_complexity 1 31 0 288 210 32 0 chr9 8732788 8732850 -133538594 - MLT1I LTR MaLR 0 409 346 508 292 14 14 chr9 8733141 8733285 -133538159 - MLT1I LTR MaLR -207 202 59 1952 309 16 48 chr9 8734156 8734903 -133536541 + L1PA15 LINE L1 1 723 -6064 14158 223 23 15 chr9 8735018 8737523 -133533921 + L1PA15 LINE L1 1324 3809 -3007 2445 123 13 11 chr9 8737523 8737897 -133533547 + THE1C LTR MaLR 1 375 0 14158 223 23 15 chr9 8737897 8740844 -133530600 + L1PA15 LINE L1 3809 6815 -1 216 86 0 0 chr9 8741986 8742021 -133529423 + (TAAA)n Simple_repeat Simple_repeat 2 36 0 21 0 0 0 chr9 8742090 8742111 -133529333 + AT_rich Low_complexity Low_complexity 1 21 0 236 200 0 50 chr9 8742587 8742647 -133528797 + L2 LINE L2 3255 3311 -2 22 56 0 0 chr9 8742981 8743017 -133528427 + AT_rich Low_complexity Low_complexity 1 36 0 264 222 0 0 chr9 8743606 8743678 -133527766 + (TG)n Simple_repeat Simple_repeat 1 72 0 333 0 0 0 chr9 8744198 8744235 -133527209 + (TTTA)n Simple_repeat Simple_repeat 4 40 0 309 230 190 10 chr9 8744372 8744472 -133526972 - L2 LINE L2 -1 3312 3195 2160 136 0 0 chr9 8746235 8746544 -133524900 - AluSc SINE Alu 0 309 1 481 263 112 0 chr9 8746636 8746788 -133524656 - MLT1H1 LTR MaLR 0 555 387 382 297 68 68 chr9 8746806 8747028 -133524416 - MLT1H1 LTR MaLR -273 282 61 504 328 6 22 chr9 8748270 8748450 -133522994 - MIR SINE MIR -32 230 54 1710 229 28 21 chr9 8748490 8748923 -133522521 - L1ME1 LINE L1 -9 6157 5722 2569 67 0 0 chr9 8749143 8749443 -133522001 - AluY SINE Alu -11 300 1 180 265 61 0 chr9 8749467 8749516 -133521928 + L2 LINE L2 3221 3272 0 382 343 6 17 chr9 8750080 8750260 -133521184 + MIR SINE MIR 30 206 -41 2429 81 7 3 chr9 8751264 8751573 -133519871 + AluY SINE Alu 1 310 -1 297 128 0 0 chr9 8755896 8755943 -133515501 + (A)n Simple_repeat Simple_repeat 1 47 0 497 173 0 10 chr9 8756050 8756154 -133515290 + CT-rich Low_complexity Low_complexity 2 104 0 446 311 28 17 chr9 8756550 8756730 -133514714 + MIR SINE MIR 81 262 0 188 346 90 32 chr9 8756860 8757239 -133514205 + L2 LINE L2 2670 3071 -201 523 255 50 32 chr9 8757775 8757973 -133513471 - MIR SINE MIR -42 220 18 352 234 117 7 chr9 8758125 8758270 -133513174 - L1ME4a LINE L1 0 6121 5961 836 84 0 0 chr9 8758311 8758418 -133513026 - AluY SINE Alu -6 305 199 23 33 0 0 chr9 8758650 8758680 -133512764 + AT_rich Low_complexity Low_complexity 1 30 0 1019 247 17 0 chr9 8759172 8759411 -133512033 + MIR SINE MIR 20 262 0 3523 251 53 23 chr9 8759525 8759868 -133511576 - L1MDb LINE L1 -2295 3785 3454 2090 134 0 0 chr9 8759868 8760158 -133511286 + AluSx SINE Alu 3 292 -20 3523 251 53 23 chr9 8760158 8761403 -133510041 - L1MDb LINE L1 -2626 3454 463 274 279 101 16 chr9 8761526 8761655 -133509789 - L1MDb LINE L1 -5664 406 267 333 296 63 0 chr9 8761836 8762017 -133509427 - L1ME LINE L1 -5384 686 515 1003 167 19 0 chr9 8763790 8763952 -133507492 - AluJb SINE Alu -15 297 133 430 335 70 44 chr9 8765133 8765476 -133505968 + MLT1J2 LTR MaLR 99 450 0 289 283 10 10 chr9 8765878 8765905 -133505539 + L3 LINE CR1 647 673 -904 2543 196 21 44 chr9 8765905 8766472 -133504972 - MLT2B3 LTR ERVL 0 554 1 289 283 10 10 chr9 8766472 8766543 -133504901 + L3 LINE CR1 672 745 -832 2043 118 48 3 chr9 8766899 8767188 -133504256 - AluSc SINE Alu -7 302 1 207 139 23 23 chr9 8767347 8767390 -133504054 + A-rich Low_complexity Low_complexity 2 44 0 229 373 117 12 chr9 8767677 8767924 -133503520 + L3 LINE CR1 1251 1523 -54 1860 191 0 20 chr9 8767941 8768291 -133503153 + MLT1A1 LTR MaLR 21 363 -2 222 217 29 43 chr9 8768410 8768479 -133502965 + CT-rich Low_complexity Low_complexity 4 71 0 337 393 17 6 chr9 8768479 8768657 -133502787 - L2 LINE L2 -1 3312 3133 629 281 65 5 chr9 8769452 8769680 -133501764 + MIR SINE MIR 5 246 -16 180 158 40 13 chr9 8771412 8771488 -133499956 + (TCTCTG)n Simple_repeat Simple_repeat 3 80 0 251 181 36 24 chr9 8771505 8771671 -133499773 + (TCTCTG)n Simple_repeat Simple_repeat 4 171 0 435 156 21 54 chr9 8771688 8771874 -133499570 + (TCTCTG)n Simple_repeat Simple_repeat 1 180 0 1079 145 0 12 chr9 8772340 8772512 -133498932 - AluSp SINE Alu -10 303 134 2420 95 0 3 chr9 8772512 8772816 -133498628 - AluY SINE Alu -8 303 1 258 292 0 0 chr9 8773736 8773808 -133497636 + MER5A DNA MER1_type 4 75 -114 232 277 9 9 chr9 8773892 8774004 -133497440 + (CA)n Simple_repeat Simple_repeat 2 113 0 1421 189 0 26 chr9 8774321 8774611 -133496833 + AluJo SINE Alu 25 307 0 251 313 157 7 chr9 8774791 8774938 -133496506 - MIR SINE MIR -71 191 23 2510 107 8 8 chr9 8776524 8776897 -133494547 - THE1C LTR MaLR 0 375 3 247 286 36 0 chr9 8778139 8778223 -133493221 + MIR SINE MIR 52 138 -70 238 216 98 49 chr9 8778809 8778911 -133492533 - LTR16C LTR ERVL 0 491 385 208 195 0 46 chr9 8779603 8779690 -133491754 + (CACCC)n Simple_repeat Simple_repeat 3 85 0 2200 122 0 10 chr9 8780785 8781089 -133490355 - AluSx SINE Alu -10 302 2 1352 263 54 28 chr9 8781646 8782107 -133489337 - MLT1E2 LTR MaLR -7 619 147 375 278 57 41 chr9 8786469 8786663 -133484781 - MER58A DNA MER1_type -2 222 26 1144 175 60 19 chr9 8786728 8786997 -133484447 - THE1C LTR MaLR 0 375 96 602 224 76 59 chr9 8788356 8788593 -133482851 + MIR SINE MIR 8 248 -14 360 246 129 23 chr9 8788614 8788834 -133482610 + MLT1K LTR MaLR 360 613 -2 1998 59 0 0 chr9 8789203 8789459 -133481985 - L1PA5 LINE L1 -1 6153 5898 185 189 0 0 chr9 8790172 8790209 -133481235 - L2 LINE L2 -23 3249 3213 245 279 58 0 chr9 8790210 8790314 -133481130 - MIR SINE MIR -124 138 29 216 184 0 0 chr9 8791003 8791041 -133480403 + (CA)n Simple_repeat Simple_repeat 1 38 0 282 243 0 0 chr9 8791173 8791247 -133480197 + G-rich Low_complexity Low_complexity 1 74 0 633 276 92 0 chr9 8793591 8793830 -133477614 - Charlie5 DNA MER1_type 0 2624 2364 256 288 14 0 chr9 8793817 8793890 -133477554 - Charlie5 DNA MER1_type -2536 76 3 * 215 286 83 7 chr9 8794416 8794510 -133476934 + MIR SINE MIR 45 144 -64 564 214 17 0 chr9 8794718 8794891 -133476553 + CT-rich Low_complexity Low_complexity 1 176 0 1480 94 44 5 chr9 8795777 8795980 -133475464 + AluSg/x SINE Alu 85 295 -17 259 301 54 0 chr9 8796726 8796819 -133474625 + MIR3 SINE MIR 92 189 -19 298 224 0 0 chr9 8796952 8797010 -133474434 + L2 LINE L2 3215 3272 0 1696 149 55 3 chr9 8797080 8797369 -133474075 - AluSx SINE Alu -8 304 1 421 345 40 0 chr9 8798312 8798486 -133472958 + MIR SINE MIR 50 230 -32 1165 252 55 3 chr9 8799081 8799406 -133472038 + MER7A DNA MER2_type 1 340 -6 298 283 11 22 chr9 8799792 8799884 -133471560 + MIR SINE MIR 87 177 -85 188 333 0 0 chr9 8799940 8799988 -133471456 - MIR SINE MIR -106 156 109 233 209 75 0 chr9 8801065 8801132 -133470312 - MLT1J LTR MaLR -341 170 99 181 296 28 14 chr9 8802913 8802984 -133468460 + L2 LINE L2 2994 3065 -248 2352 60 0 0 chr9 8803218 8803529 -133467915 - AluY SINE Alu 0 311 1 817 164 0 29 chr9 8803529 8803669 -133467775 - AluJo SINE Alu -176 136 1 1912 97 0 0 chr9 8803718 8803965 -133467479 - AluSx SINE Alu -19 293 47 186 200 20 20 chr9 8804593 8804643 -133466801 - MIR SINE MIR -57 151 102 390 303 70 32 chr9 8805043 8805228 -133466216 + MIR SINE MIR 41 232 -30 401 330 62 17 chr9 8805494 8805785 -133465659 - L1MEc LINE L1 -6028 368 65 627 253 220 10 chr9 8807652 8808011 -133463433 - MLT1C LTR MaLR -47 420 1 194 126 11 69 chr9 8808720 8808807 -133462637 + (GGA)n Simple_repeat Simple_repeat 2 83 0 351 297 109 0 chr9 8810989 8811127 -133460317 - MIR SINE MIR -19 243 91 23 0 0 0 chr9 8812822 8812845 -133458599 + GC_rich Low_complexity Low_complexity 1 23 0 326 251 115 20 chr9 8814357 8814475 -133456969 + MIR SINE MIR 33 162 -46 2122 78 58 3 chr9 8814629 8814924 -133456520 - AluY SINE Alu 0 311 1 2299 258 92 8 chr9 8815815 8816567 -133454877 - MER21B LTR ERV1 0 863 49 276 294 0 0 chr9 8816578 8816646 -133454798 - MER21B LTR ERV1 -777 86 19 285 244 37 0 chr9 8816759 8816841 -133454603 + MLT1E2 LTR MaLR 124 208 -418 248 259 0 0 chr9 8817163 8817221 -133454223 + MARNA DNA Mariner 436 493 -93 1883 184 47 19 chr9 8818264 8818629 -133452815 + THE1C LTR MaLR 1 375 0 1274 193 28 0 chr9 8820040 8820252 -133451192 + MER20 DNA MER1_type 1 218 -1 22 0 0 0 chr9 8821420 8821442 -133450002 + GC_rich Low_complexity Low_complexity 1 22 0 392 330 84 0 chr9 8822125 8822304 -133449140 + MIR SINE MIR 43 236 -26 279 363 9 9 chr9 8823020 8823133 -133448311 + L3 LINE CR1 1417 1529 -48 495 244 154 5 chr9 8823160 8823361 -133448083 + MER113 DNA MER1_type? 61 291 -230 206 295 33 0 chr9 8825487 8825548 -133445896 - MER91B DNA MER1_type -127 63 1 569 209 157 5 chr9 8825555 8825765 -133445679 - MLT1D LTR MaLR -157 348 107 372 277 108 19 chr9 8826553 8826766 -133444678 - LTR16A LTR ERVL -17 433 202 255 168 76 0 chr9 8826840 8826959 -133444485 + (CAGGA)n Simple_repeat Simple_repeat 3 130 0 242 272 48 24 chr9 8826959 8827084 -133444360 + (CGGGA)n Simple_repeat Simple_repeat 3 130 0 1732 231 86 25 chr9 8830488 8830978 -133440466 - MLT2B1 LTR ERVL 0 520 1 2659 104 8 29 chr9 8831550 8831933 -133439511 + THE1C LTR MaLR 1 375 0 441 104 42 52 chr9 8833668 8833764 -133437680 - L1MA8 LINE L1 -1 6290 6196 234 245 28 56 chr9 8837570 8837713 -133433731 + GA-rich Low_complexity Low_complexity 3 141 0 203 222 0 37 chr9 8839837 8839891 -133431553 - MIR SINE MIR -64 144 93 201 244 0 0 chr9 8840066 8840111 -133431333 + (TGAG)n Simple_repeat Simple_repeat 4 48 0 193 260 188 0 chr9 8840641 8840737 -133430707 - MIR SINE MIR -128 134 21 234 188 14 110 chr9 8841122 8841209 -133430235 - MIR SINE MIR -61 147 86 3165 142 45 215 chr9 8845793 8847158 -133424286 + L1 LINE L1 3240 4372 -1774 2049 122 7 0 chr9 8847159 8847453 -133423991 + AluSq SINE Alu 1 296 -17 404 259 29 43 chr9 8847457 8847596 -133423848 - L2 LINE L2 -256 3057 2921 5156 284 40 19 chr9 8847721 8849820 -133421624 - L1P LINE L1 -2537 3609 1466 261 247 53 94 chr9 8850422 8850592 -133420852 + LTR67 LTR ERVL 381 543 -14 214 239 15 15 chr9 8850698 8850765 -133420679 + (TA)n Simple_repeat Simple_repeat 2 68 0 204 179 0 0 chr9 8850882 8850921 -133420523 + T-rich Low_complexity Low_complexity 1 39 0 25 0 0 0 chr9 8851407 8851432 -133420012 + AT_rich Low_complexity Low_complexity 1 25 0 379 256 175 0 chr9 8851650 8851787 -133419657 - MIR SINE MIR -2 260 100 220 158 26 0 chr9 8852520 8852558 -133418886 + L2 LINE L2 3264 3302 -11 906 231 54 0 chr9 8855032 8855218 -133416226 + Tigger7 DNA MER2_type 7 202 -503 713 278 27 0 chr9 8855433 8855656 -133415788 + Tigger7 DNA MER2_type 191 419 -2068 667 149 90 70 chr9 8856415 8856616 -133414828 - MLT1C LTR MaLR -231 236 32 252 258 0 0 chr9 8857547 8857609 -133413835 - MER2 DNA MER2_type -1 344 283 241 290 0 0 chr9 8857585 8857654 -133413790 - MER8 DNA MER2_type -60 179 111 * 425 242 121 0 chr9 8857767 8857916 -133413528 + MLT1F1 LTR MaLR 1 167 -223 476 264 142 44 chr9 8858746 8859041 -133412403 + MLT1F1 LTR MaLR 244 567 0 672 198 20 10 chr9 8859429 8859600 -133411844 - MLT1A1 LTR MaLR -175 190 15 288 207 198 0 chr9 8859921 8860032 -133411412 + MLT1K LTR MaLR 431 563 -25 729 262 72 20 chr9 8861162 8861639 -133409805 - MER77 LTR ERV1 -4 601 58 247 176 0 39 chr9 8863380 8863431 -133408013 - L2 LINE L2 -5 3267 3219 2325 241 49 29 chr9 8864438 8864570 -133406874 + MER67C LTR ERV1 1 129 -581 2074 96 13 3 chr9 8864570 8864872 -133406572 - AluSc SINE Alu -4 305 1 2325 241 49 29 chr9 8864872 8865435 -133406009 + MER67C LTR ERV1 129 710 0 2020 101 3 3 chr9 8866041 8866327 -133405117 + AluSg1 SINE Alu 1 286 -23 2179 101 53 71 chr9 8866506 8866725 -133404719 + MER51A LTR ERV1 1 222 -412 238 67 44 0 chr9 8866725 8866770 -133404674 + (TTTG)n Simple_repeat Simple_repeat 2 48 0 1974 125 0 20 chr9 8866773 8867077 -133404367 - AluSx SINE Alu -14 298 1 2179 101 53 71 chr9 8867077 8867403 -133404041 + MER51A LTR ERV1 224 634 0 2400 234 51 43 chr9 8867794 8868546 -133402898 - L1M4 LINE L1 -1778 4368 3608 1226 171 98 29 chr9 8868546 8868821 -133402623 - AluJb SINE Alu -18 294 1 2400 234 51 43 chr9 8868821 8868832 -133402612 - L1M4 LINE L1 -2538 3608 3599 723 244 80 20 chr9 8868827 8869028 -133402416 - L1MD2 LINE L1 -16 6343 6131 * 266 197 237 0 chr9 8869270 8869346 -133402098 - L1MD2 LINE L1 -543 5699 5606 480 239 22 29 chr9 8869401 8869539 -133401905 - L1M4 LINE L1 -2595 3551 3415 237 300 51 74 chr9 8869774 8870031 -133401413 + MLT1-int LTR MaLR 1114 1364 -7 6076 18 0 0 chr9 8870237 8870914 -133400530 - L1PA3 LINE L1 -16 6139 5463 * 7326 36 18 0 chr9 8870911 8871894 -133399550 + L1PA4 LINE L1 5149 6147 -8 2192 67 7 24 chr9 8872034 8872332 -133399112 + AluY SINE Alu 1 293 -18 201 74 0 0 chr9 8872396 8872423 -133399021 + (TA)n Simple_repeat Simple_repeat 2 28 0 271 279 52 22 chr9 8872499 8872635 -133398809 - L1MC/D LINE L1 -1928 5880 5741 5588 72 3 0 chr9 8872791 8873499 -133397945 - L1PA7 LINE L1 -3 6151 5442 5205 156 41 1 chr9 8874202 8875203 -133396241 - L1PA16 LINE L1 -9 6157 5116 180 0 0 0 chr9 8875405 8875425 -133396019 + (T)n Simple_repeat Simple_repeat 1 20 0 380 326 116 31 chr9 8876585 8876843 -133394601 - L2 LINE L2 -3 3310 3031 426 262 121 7 chr9 8878232 8878373 -133393071 + MER5A DNA MER1_type 33 189 0 1905 135 0 3 chr9 8878871 8879160 -133392284 - AluJb SINE Alu -16 296 9 236 375 22 52 chr9 8881143 8881279 -133390165 + MIR SINE MIR 19 150 -58 204 326 102 0 chr9 8881476 8881574 -133389870 + MIR SINE MIR 152 259 -3 1807 77 151 4 chr9 8883068 8883327 -133388117 - AluY SINE Alu -3 298 2 344 257 38 0 chr9 8883643 8883748 -133387696 + MER103 DNA DNA 1 109 -57 23 0 0 0 chr9 8885221 8885244 -133386200 + AT_rich Low_complexity Low_complexity 1 23 0 295 284 40 14 chr9 8887364 8887438 -133384006 + MIR SINE MIR 32 107 -155 235 311 66 25 chr9 8888080 8888202 -133383242 - L2 LINE L2 0 3313 3187 712 316 112 54 chr9 8889492 8890453 -133380991 + L2 LINE L2 2297 3313 0 1905 149 0 10 chr9 8891015 8891323 -133380121 - AluSx SINE Alu -3 309 5 24 0 0 0 chr9 8891537 8891561 -133379883 + AT_rich Low_complexity Low_complexity 1 24 0 24 32 0 0 chr9 8891870 8891901 -133379543 + AT_rich Low_complexity Low_complexity 1 31 0 1578 189 70 83 chr9 8892292 8892774 -133378670 - LTR8 LTR ERV1 -215 476 1 2000 111 10 0 chr9 8892860 8893157 -133378287 - AluSq SINE Alu -12 301 2 1012 149 28 11 chr9 8894158 8894339 -133377105 + MER5A DNA MER1_type 6 189 0 498 147 138 0 chr9 8894394 8894503 -133376941 + MER53 DNA DNA 3 126 -63 1866 153 73 14 chr9 8896402 8896756 -133374688 + THE1C LTR MaLR 1 375 0 219 277 117 51 chr9 8897469 8897606 -133373838 + L2 LINE L2 3166 3311 -2 872 359 87 11 chr9 8898354 8898883 -133372561 - MLT1K LTR MaLR -3 585 17 180 378 14 0 chr9 8898953 8899027 -133372417 - L2 LINE L2 -218 3054 2980 395 330 16 68 chr9 8899125 8899316 -133372128 + MER5A DNA MER1_type 7 187 -2 342 275 0 0 chr9 8899372 8899452 -133371992 - L2 LINE L2 0 3313 3234 616 174 232 7 chr9 8899478 8899616 -133371828 - MER45A DNA AcHobo -9 169 1 890 170 105 0 chr9 8899880 8900051 -133371393 + MER5A DNA MER1_type 1 189 0 4993 116 26 8 chr9 8900932 8902241 -133369203 + L1PA14 LINE L1 4781 6158 -3 348 212 68 25 chr9 8903050 8903168 -133368276 - MLT1K LTR MaLR -47 541 419 243 218 0 0 chr9 8903216 8903271 -133368173 - MLT1K LTR MaLR -158 430 376 2117 139 0 3 chr9 8903528 8903831 -133367613 - AluSx SINE Alu -10 302 1 327 49 0 0 chr9 8904246 8904287 -133367157 + (CA)n Simple_repeat Simple_repeat 2 42 0 33 80 0 0 chr9 8905136 8905211 -133366233 + AT_rich Low_complexity Low_complexity 1 75 0 184 283 43 0 chr9 8905420 8905466 -133365978 + L2 LINE L2 1835 1882 -1432 214 241 60 60 chr9 8906360 8906443 -133365001 - MIR SINE MIR -56 206 124 1574 162 19 4 chr9 8906449 8906715 -133364729 + MLT1A1 LTR MaLR 1 270 -95 3552 266 44 20 chr9 8906830 8908247 -133363197 + L1M4 LINE L1 3213 4663 -1483 1231 179 70 5 chr9 8909263 8909526 -133361918 - L1MD2 LINE L1 -21 7752 6172 227 176 0 0 chr9 8909529 8909563 -133361881 + Charlie3 DNA MER1_type 1 34 -2676 4297 168 29 20 chr9 8909728 8910076 -133361368 - L1MB5 LINE L1 0 6174 5830 1860 150 0 32 chr9 8910076 8910390 -133361054 - AluJb SINE Alu -8 304 1 4297 168 29 20 chr9 8910390 8910883 -133360561 - L1MB5 LINE L1 -344 5830 5326 1721 168 31 17 chr9 8910896 8911188 -133360256 - AluJb SINE Alu -16 296 1 1857 167 0 16 chr9 8911194 8911506 -133359938 - AluJo SINE Alu -5 307 1 1636 196 28 0 chr9 8911511 8911797 -133359647 - AluJb SINE Alu -18 294 1 230 170 0 0 chr9 8911804 8911851 -133359593 - L1MB5 LINE L1 -834 5328 5282 909 236 41 20 chr9 8911854 8912197 -133359247 - L1M4c LINE L1 -4071 2313 1964 2463 111 17 37 chr9 8912381 8912785 -133358659 - HERVK9 LTR ERVK -5520 396 1 3370 125 2 6 chr9 8912785 8913282 -133358162 - MER9 LTR ERVK 0 511 17 8024 157 18 8 chr9 8913439 8914824 -133356620 + Tigger1 DNA MER2_type 1 1399 -1019 2049 92 4 0 chr9 8914926 8915186 -133356258 - AluSq SINE Alu -50 263 3 303 167 24 60 chr9 8915538 8915622 -133355822 - L1M4 LINE L1 -3170 2976 2896 6462 26 3 0 chr9 8915731 8916491 -133354953 + L1PA2 LINE L1 5391 6152 -3 280 179 155 12 chr9 8917091 8917175 -133354269 - MER33 DNA MER1_type -224 100 5 200 309 49 81 chr9 8918209 8918332 -133353112 + L2 LINE L2 3187 3305 -8 412 330 59 39 chr9 8919803 8920006 -133351438 - MIR SINE MIR -7 255 49 573 320 64 27 chr9 8920371 8920788 -133350656 + L1ME3A LINE L1 5268 5689 -520 204 204 37 0 chr9 8920789 8920843 -133350601 + (TA)n Simple_repeat Simple_repeat 2 57 0 310 374 36 12 chr9 8920919 8921085 -133350359 + L1ME3A LINE L1 5728 5897 -273 207 365 81 0 chr9 8921526 8921600 -133349844 - L2 LINE L2 -223 3049 2970 301 302 63 32 chr9 8921830 8921956 -133349488 - MLT1J LTR MaLR 0 511 382 1523 237 91 24 chr9 8921962 8922419 -133349025 + MLT2B1 LTR ERVL 1 534 -20 224 182 0 18 chr9 8922425 8922480 -133348964 + CT-rich Low_complexity Low_complexity 1 54 0 221 147 0 0 chr9 8922481 8922515 -133348929 + (TC)n Simple_repeat Simple_repeat 2 35 0 388 318 95 34 chr9 8922536 8922800 -133348644 - MLT1J LTR MaLR -226 285 6 2243 259 10 19 chr9 8923728 8924242 -133347202 - MLT1F LTR MaLR -6 536 28 2562 177 18 11 chr9 8924592 8925032 -133346412 + L1PA13 LINE L1 2 444 -6343 368 95 16 32 chr9 8925132 8925195 -133346249 - MER30 DNA MER1_type -162 68 7 3993 118 3 0 chr9 8925201 8925779 -133345665 + Tigger1 DNA MER2_type 1461 2040 -378 288 243 0 0 chr9 8926668 8926742 -133344702 + (CATATA)n Simple_repeat Simple_repeat 4 77 0 268 338 110 15 chr9 8926898 8927034 -133344410 - MIR SINE MIR -109 153 5 380 145 0 0 chr9 8927358 8927420 -133344024 + MSTB1 LTR MaLR 344 405 -27 22 0 0 0 chr9 8929944 8929966 -133341478 + AT_rich Low_complexity Low_complexity 1 22 0 6071 55 3 10 chr9 8930070 8930899 -133340545 + L1P3 LINE L1 2 953 -5193 471 281 99 18 chr9 8930999 8931170 -133340274 - L2 LINE L2 -40 3273 3089 863 183 91 6 chr9 8931172 8931347 -133340097 + MER58A DNA MER1_type 25 214 -10 483 273 107 0 chr9 8931356 8931506 -133339938 - L2 LINE L2 -504 2810 2645 1297 86 15 40 chr9 8931506 8931704 -133339740 - MER30 DNA MER1_type -37 193 1 840 321 11 4 chr9 8931824 8932101 -133339343 - L2 LINE L2 -861 2453 2175 216 0 0 0 chr9 8932103 8932127 -133339317 + (T)n Simple_repeat Simple_repeat 1 24 0 189 216 0 0 chr9 8932428 8932465 -133338979 - MIR SINE MIR -3 259 223 5561 65 39 0 chr9 8932810 8933547 -133337897 + L1PA7 LINE L1 5386 6151 -3 265 276 52 22 chr9 8933703 8933837 -133337607 + L1MC/D LINE L1 5741 5878 -1930 201 74 0 0 chr9 8933915 8933942 -133337502 + (TA)n Simple_repeat Simple_repeat 2 28 0 1866 62 8 29 chr9 8934006 8934250 -133337194 - AluY SINE Alu -18 293 55 7073 181 13 21 chr9 8934350 8936546 -133334898 + L1PA13 LINE L1 3944 6145 -18 779 251 0 26 chr9 8936583 8936774 -133334670 + AluJb SINE Alu 127 312 0 645 274 88 18 chr9 8937061 8937401 -133334043 + L1ME3A LINE L1 4037 4400 -1746 1100 278 168 10 chr9 8937411 8937994 -133333450 + L1ME3A LINE L1 4573 5247 -899 2305 246 71 24 chr9 8938067 8938621 -133332823 + L1ME3A LINE L1 5274 5883 -287 782 230 99 5 chr9 8938621 8938812 -133332632 - MER63A DNA MER1_type -1 209 1 2305 246 71 24 chr9 8938812 8939106 -133332338 + L1ME3A LINE L1 5883 6162 -8 905 191 12 0 chr9 8939161 8939323 -133332121 - MER58B DNA MER1_type -5 336 173 240 289 45 58 chr9 8939392 8939548 -133331896 - MIR3 SINE MIR -25 183 30 592 191 0 116 chr9 8939716 8939830 -133331614 + L1MA9 LINE L1 6105 6189 -123 2231 90 0 0 chr9 8939830 8940144 -133331300 - AluSc SINE Alu 0 316 3 592 191 0 116 chr9 8940144 8940227 -133331217 + L1MA9 LINE L1 6189 6280 -32 23 54 0 0 chr9 8940530 8940567 -133330877 + AT_rich Low_complexity Low_complexity 1 37 0 3382 133 57 25 chr9 8941398 8942031 -133329413 - MER39B LTR ERV1 0 653 1 583 76 0 0 chr9 8942509 8942639 -133328805 - AluSg/x SINE Alu 0 333 204 268 250 0 0 chr9 8943571 8943631 -133327813 + Charlie8 DNA MER1_type 2357 2416 -1 1879 181 25 27 chr9 8943967 8944375 -133327069 - L1MA10 LINE L1 -13 6321 5915 1483 312 57 40 chr9 8944543 8945249 -133326195 - L3 LINE CR1 -99 1478 761 641 313 96 24 chr9 8945324 8945742 -133325702 + MLT1H LTR MaLR 102 549 0 366 350 87 15 chr9 8946600 8946806 -133324638 + MIR SINE MIR 1 221 -41 265 267 120 0 chr9 8946926 8947001 -133324443 - MLT1J LTR MaLR -142 369 286 974 247 126 40 chr9 8947308 8947985 -133323459 - L1MEc LINE L1 -4813 1583 849 1333 275 61 7 chr9 8948003 8948446 -133322998 - L1MEc LINE L1 -5640 756 290 187 336 101 40 chr9 8948446 8948595 -133322849 - MER5A DNA MER1_type -16 173 16 208 352 66 9 chr9 8948786 8948979 -133322465 + MIR SINE MIR 18 221 -41 387 324 101 26 chr9 8949072 8949378 -133322066 - HAL1 LINE L1 -1353 1154 826 780 179 0 22 chr9 8949678 8949862 -133321582 + CT-rich Low_complexity Low_complexity 1 180 0 1909 161 0 13 chr9 8950362 8950667 -133320777 + AluJb SINE Alu 3 303 -9 243 204 0 0 chr9 8950991 8951045 -133320399 + (TATATG)n Simple_repeat Simple_repeat 4 57 0 2851 12 0 6 chr9 8951470 8951790 -133319654 + AluYb8 SINE Alu 1 318 0 22 0 0 0 chr9 8953224 8953246 -133318198 + AT_rich Low_complexity Low_complexity 1 22 0 511 163 273 5 chr9 8954213 8954332 -133317112 + MSTA LTR MaLR 1 151 -241 400 357 78 0 chr9 8955149 8955303 -133316141 - L2 LINE L2 -1 3271 3106 518 243 41 18 chr9 8955425 8955857 -133315587 + LTR33 LTR ERVL 3 521 0 228 195 0 0 chr9 8956082 8956123 -133315321 + MER34 LTR ERV1 6 46 -496 1491 187 127 19 chr9 8956181 8956550 -133314894 + MER39 LTR ERV1 290 698 -9 1938 227 38 47 chr9 8956593 8957169 -133314275 + MLT1E3 LTR MaLR 4 574 -50 1092 173 25 0 chr9 8957454 8957651 -133313793 + MER3 DNA MER1_type 3 204 -5 3109 131 15 27 chr9 8957750 8958157 -133313287 - L1PA16 LINE L1 0 6166 5766 180 0 0 0 chr9 8958157 8958177 -133313267 + (TTTA)n Simple_repeat Simple_repeat 4 23 0 3109 131 15 27 chr9 8958177 8958318 -133313126 - L1PA16 LINE L1 -400 5766 5625 22 0 0 0 chr9 8958353 8958375 -133313069 + AT_rich Low_complexity Low_complexity 1 22 0 211 350 114 24 chr9 8958585 8958708 -133312736 + MIR3 SINE MIR 13 146 -62 22 35 0 0 chr9 8958923 8958952 -133312492 + AT_rich Low_complexity Low_complexity 1 29 0 333 0 0 0 chr9 8959683 8959720 -133311724 + (TC)n Simple_repeat Simple_repeat 2 38 0 346 232 61 0 chr9 8959732 8959814 -133311630 - L1MC4 LINE L1 -1339 6703 6617 999 228 97 28 chr9 8960629 8961102 -133310342 + Charlie4a DNA MER1_type 3 508 0 407 312 153 27 chr9 8961360 8961732 -133309712 - MLT1L LTR MaLR -54 561 143 355 365 76 25 chr9 8962972 8963249 -133308195 + L2 LINE L2 2977 3267 -5 288 169 15 0 chr9 8966829 8966894 -133304550 + MADE1 DNA Mariner 14 79 -1 823 51 0 0 chr9 8967290 8967388 -133304056 + L1PA4 LINE L1 1 98 -6048 * 38668 40 6 0 chr9 8967386 8972893 -133298551 + L1PA4 LINE L1 623 6161 0 875 173 21 37 chr9 8974003 8974194 -133297250 + MER5A DNA MER1_type 2 189 0 262 306 86 27 chr9 8974551 8974773 -133296671 - L1MC4 LINE L1 -1960 5848 5614 566 186 9 9 chr9 8974786 8974899 -133296545 + MER74A LTR ERVL 1 113 -445 1959 219 16 26 chr9 8974950 8975375 -133296069 + MER74B LTR ERVL 176 596 -26 326 208 78 0 chr9 8975605 8975682 -133295762 + L1MC4 LINE L1 6621 6703 -1339 333 0 0 0 chr9 8975694 8975731 -133295713 + (GA)n Simple_repeat Simple_repeat 2 38 0 2728 231 44 5 chr9 8976414 8977167 -133294277 + L1ME1 LINE L1 3981 4762 -1384 2006 129 0 0 chr9 8977820 8978099 -133293345 + AluSx SINE Alu 1 279 -33 249 108 0 0 chr9 8978099 8978136 -133293308 + (TAAA)n Simple_repeat Simple_repeat 4 40 0 837 271 48 36 chr9 8978547 8978798 -133292646 + MIR SINE MIR 8 261 -1 2355 192 48 43 chr9 8978850 8979635 -133291809 + L1ME1 LINE L1 4801 5623 -543 444 213 0 0 chr9 8979635 8979715 -133291729 + AluJ/FLAM SINE Alu 5 84 -228 2355 192 48 43 chr9 8979715 8979965 -133291479 + L1ME1 LINE L1 5623 5870 -296 3934 172 18 1 chr9 8979967 8981129 -133290315 - L1M2 LINE L1 -490 5822 4647 193 329 96 0 chr9 8981154 8981227 -133290217 - MIR SINE MIR -109 153 74 191 388 36 24 chr9 8981589 8981754 -133289690 + L2 LINE L2 2887 3053 -219 383 324 71 24 chr9 8983365 8983535 -133287909 + MER5B DNA MER1_type 1 178 0 231 94 0 0 chr9 8984019 8984051 -133287393 - L2 LINE L2 -259 3054 3023 193 303 0 15 chr9 8984063 8984129 -133287315 + L2 LINE L2 3249 3313 0 227 299 55 24 chr9 8984235 8984362 -133287082 - L2 LINE L2 -481 2833 2703 989 249 155 22 chr9 8984409 8984855 -133286589 - L2 LINE L2 -590 2724 2220 207 241 12 60 chr9 8984901 8984984 -133286460 + CT-rich Low_complexity Low_complexity 5 83 0 252 203 34 17 chr9 8985102 8985161 -133286283 + MIR SINE MIR 82 141 -67 2261 221 21 0 chr9 8985439 8985906 -133285538 + LTR53 LTR ERVL 1 477 -42 1828 125 3 42 chr9 8985921 8986208 -133285236 + AluSq SINE Alu 1 276 -37 693 194 17 6 chr9 8986210 8986385 -133285059 + GA-rich Low_complexity Low_complexity 3 179 0 2263 85 0 10 chr9 8986426 8986720 -133284724 - AluY SINE Alu -20 291 1 2133 112 3 38 chr9 8986720 8987034 -133284410 - AluSx SINE Alu -1 311 9 459 313 107 21 chr9 8987038 8987271 -133284173 + MLT1I LTR MaLR 150 402 -7 769 180 97 44 chr9 8987530 8987736 -133283708 - MER20 DNA MER1_type -2 217 1 2078 104 42 0 chr9 8988543 8988830 -133282614 + AluY SINE Alu 1 299 -12 24 0 0 0 chr9 8990527 8990551 -133280893 + AT_rich Low_complexity Low_complexity 1 24 0 308 197 0 45 chr9 8990682 8990748 -133280696 + L2 LINE L2 3249 3311 -2 412 240 50 0 chr9 8991767 8991867 -133279577 - L2 LINE L2 -4 3309 3205 * 1545 278 42 24 chr9 8991865 8992362 -133279082 - L2 LINE L2 -500 2814 2309 293 327 137 29 chr9 8992386 8992664 -133278780 - L2 LINE L2 -1 3312 3005 1487 127 27 0 chr9 8992695 8992916 -133278528 + MER30 DNA MER1_type 4 230 0 269 121 52 0 chr9 8993942 8994000 -133277444 + HSMAR1 DNA Mariner 1227 1287 0 319 261 8 75 chr9 8996027 8996161 -133275283 + MIR SINE MIR 88 212 -50 296 244 9 61 chr9 8997110 8997225 -133274219 + MLT1L LTR MaLR 387 495 -120 230 340 29 10 chr9 8997302 8997405 -133274039 + L2 LINE L2 3181 3285 -28 189 0 0 0 chr9 8997601 8997622 -133273822 + (T)n Simple_repeat Simple_repeat 1 21 0 282 250 100 0 chr9 8998683 8998783 -133272661 - L1ME LINE L1 -381 5740 5631 2250 121 36 33 chr9 8999841 9000204 -133271240 + THE1B LTR MaLR 1 364 0 25 31 0 0 chr9 9002222 9002254 -133269190 + AT_rich Low_complexity Low_complexity 1 32 0 533 309 104 17 chr9 9002397 9002627 -133268817 + MIR SINE MIR 12 261 -1 314 315 35 35 chr9 9002949 9003092 -133268352 + MIR3 SINE MIR 41 183 -25 378 0 0 0 chr9 9003767 9003809 -133267635 + (CA)n Simple_repeat Simple_repeat 2 43 0 229 203 31 31 chr9 9003905 9003969 -133267475 + G-rich Low_complexity Low_complexity 1 64 0 791 305 4 21 chr9 9004496 9004735 -133266709 - MIR SINE MIR -25 237 3 1218 231 34 0 chr9 9004980 9005274 -133266170 - L1ME1 LINE L1 -6 6160 5857 812 146 22 14 chr9 9005279 9005618 -133265826 + CT-rich Low_complexity Low_complexity 1 341 0 1540 163 22 22 chr9 9005644 9005921 -133265523 - AluJo SINE Alu -3 309 33 1367 185 48 0 chr9 9005921 9006191 -133265253 - L1ME1 LINE L1 -307 5859 5577 1243 198 39 61 chr9 9006374 9006784 -133264660 + MER39 LTR ERV1 307 707 0 730 195 12 12 chr9 9006784 9006953 -133264491 - L1ME1 LINE L1 -583 5583 5415 196 293 0 35 chr9 9007492 9007550 -133263894 + MER5A DNA MER1_type 45 100 -89 215 179 0 0 chr9 9007568 9007607 -133263837 + L2 LINE L2 3257 3295 -18 2012 151 0 3 chr9 9007800 9008104 -133263340 + AluSx SINE Alu 1 303 -9 978 70 0 56 chr9 9008106 9008249 -133263195 + AluY SINE Alu 175 309 -2 216 0 0 0 chr9 9008629 9008653 -133262791 + (A)n Simple_repeat Simple_repeat 1 24 0 216 240 133 93 chr9 9009795 9009945 -133261499 + MER5A DNA MER1_type 34 189 0 324 93 19 0 chr9 9010018 9010072 -133261372 - L1PB2 LINE L1 -2 6149 6095 503 265 7 52 chr9 9010075 9010141 -133261303 - L2 LINE L2 -9 3263 3204 1725 208 43 41 chr9 9010141 9010607 -133260837 - MLT1C LTR MaLR 0 467 1 503 265 7 52 chr9 9010607 9010676 -133260768 - L2 LINE L2 -68 3204 3134 211 292 150 0 chr9 9011578 9011691 -133259753 - MIR SINE MIR -5 257 128 23 33 0 0 chr9 9012901 9012931 -133258513 + AT_rich Low_complexity Low_complexity 1 30 0 330 383 6 16 chr9 9013598 9013781 -133257663 + MIR SINE MIR 8 188 -74 459 254 47 41 chr9 9015274 9015332 -133256112 - LTR67 LTR ERVL -293 264 208 1522 105 0 0 chr9 9015332 9015532 -133255912 - AluSg/x SINE Alu -2 308 109 459 254 47 41 chr9 9015532 9015642 -133255802 - LTR67 LTR ERVL -349 208 95 207 0 0 0 chr9 9015657 9015680 -133255764 + (A)n Simple_repeat Simple_repeat 1 23 0 2952 271 105 56 chr9 9015802 9016593 -133254851 + L2 LINE L2 1511 2393 -921 2316 77 10 3 chr9 9016593 9016892 -133254552 + AluSg SINE Alu 1 301 -9 2952 271 105 56 chr9 9016892 9017416 -133254028 + L2 LINE L2 2393 2890 -424 186 194 0 0 chr9 9017634 9017665 -133253779 - L2 LINE L2 -23 3249 3219 2438 91 0 0 chr9 9017998 9018307 -133253137 + AluSc SINE Alu 1 309 0 318 26 0 0 chr9 9018694 9018733 -133252711 + (CA)n Simple_repeat Simple_repeat 2 40 0 224 307 40 0 chr9 9018923 9018998 -133252446 - MIR SINE MIR -14 248 171 323 217 17 104 chr9 9020851 9020966 -133250478 - MIR SINE MIR -108 154 50 1922 128 45 0 chr9 9021216 9021505 -133249939 + AluSg SINE Alu 1 302 -8 428 222 126 29 chr9 9021553 9021760 -133249684 - HAL1 LINE L1 -5 2502 2276 581 290 80 8 chr9 9021836 9022074 -133249370 - L2 LINE L2 0 3313 3059 1929 228 120 86 chr9 9022074 9023392 -133248052 - HAL1 LINE L1 -331 2176 814 2579 52 3 0 chr9 9023774 9024082 -133247362 - AluY SINE Alu -2 309 1 216 200 0 0 chr9 9024335 9024380 -133247064 + (TA)n Simple_repeat Simple_repeat 1 45 0 235 0 0 54 chr9 9026223 9026260 -133245184 + (CAAAAA)n Simple_repeat Simple_repeat 2 36 0 233 330 28 28 chr9 9027032 9027138 -133244306 + L2 LINE L2 3158 3263 -50 322 282 101 32 chr9 9027476 9027603 -133243841 - MER5B DNA MER1_type -39 150 5 195 329 53 26 chr9 9027893 9027969 -133243475 - MIR SINE MIR -162 100 23 353 330 98 15 chr9 9028774 9028977 -133242467 - MIR SINE MIR -34 228 9 650 255 51 23 chr9 9029542 9029776 -133241668 - MIR SINE MIR -23 239 3 188 35 35 0 chr9 9031442 9031471 -133239973 + (TAA)n Simple_repeat Simple_repeat 1 30 0 279 288 68 38 chr9 9033267 9033399 -133238045 - L2 LINE L2 0 3272 3137 369 299 149 8 chr9 9035096 9035230 -133236214 - MER5A DNA MER1_type -6 183 31 380 226 66 9 chr9 9036209 9036315 -133235129 + MER117 DNA MER1_type 7 118 -79 306 270 45 0 chr9 9036503 9036592 -133234852 - L2 LINE L2 0 3313 3221 8416 213 39 25 chr9 9037763 9039554 -133231890 - L1MC1 LINE L1 0 6333 4569 2480 62 0 0 chr9 9039554 9039869 -133231575 + AluSc SINE Alu 1 315 0 8416 213 39 25 chr9 9039869 9041888 -133229556 - L1MC1 LINE L1 -1764 4569 2460 1948 166 77 0 chr9 9042294 9042632 -133228812 - THE1B LTR MaLR 0 364 1 11498 103 5 2 chr9 9042632 9044207 -133227237 - THE1B-int LTR MaLR 0 1580 1 2065 108 108 15 chr9 9044207 9044540 -133226904 - THE1B LTR MaLR 0 364 1 281 294 49 10 chr9 9044833 9044935 -133226509 - MIR SINE MIR -94 168 63 820 230 8 6 chr9 9045090 9045314 -133226130 - L1PA16 LINE L1 -5 6146 5921 475 287 84 0 chr9 9045754 9045897 -133225547 + MIR SINE MIR 89 243 -19 288 274 168 9 chr9 9045906 9046019 -133225425 - MER94 DNA DNA -1 133 3 589 316 92 5 chr9 9047064 9047270 -133224174 + MIR SINE MIR 29 252 -10 497 309 48 30 chr9 9047522 9047687 -133223757 - MIR SINE MIR -77 185 18 325 375 8 0 chr9 9048039 9048159 -133223285 - MIR SINE MIR -65 143 23 198 0 0 0 chr9 9048526 9048548 -133222896 + (CAAAA)n Simple_repeat Simple_repeat 3 24 0 1166 212 29 67 chr9 9050066 9050457 -133220987 + MLT1B LTR MaLR 1 342 -32 403 331 73 17 chr9 9050892 9050979 -133220465 + MIR SINE MIR 65 146 -116 1612 171 72 17 chr9 9050979 9051325 -133220119 - MLT1A1 LTR MaLR 0 365 1 403 331 73 17 chr9 9051325 9051415 -133220029 + MIR SINE MIR 146 252 -10 280 310 80 10 chr9 9051993 9052093 -133219351 - MIR SINE MIR -72 190 84