1356 84 6 0 chr6 4 182 -182415060 + MER4E LTR ERV1 588 766 0 2115 141 33 25 chr6 197 558 -182414684 - THE1B LTR MaLR 0 364 1 229 217 169 12 chr6 723 806 -182414436 - LTR33A LTR ERVL -364 159 64 1772 262 100 23 chr6 859 1629 -182413613 + HAL1 LINE L1 1673 2501 -6 182 273 171 23 chr6 3283 3371 -182411871 + L2 LINE L2 3166 3266 -6 2354 96 0 10 chr6 4049 4361 -182410881 - AluSc SINE Alu 0 309 1 3187 88 31 2 chr6 4848 5301 -182409941 - L1PA10 LINE L1 -5 6163 5698 393 95 0 0 chr6 5366 5429 -182409813 + (TA)n Simple_repeat Simple_repeat 1 63 0 2222 140 88 25 chr6 5431 5839 -182409403 + Tigger2a DNA MER2_type 1 434 0 474 283 82 22 chr6 6670 6854 -182408388 + L2 LINE L2 3118 3312 -1 1010 283 134 27 chr6 8204 8478 -182406764 - L2 LINE L2 -1 3312 3069 6665 38 48 0 chr6 8478 9312 -182405930 + L1PA5 LINE L1 5273 6146 -8 1010 283 134 27 chr6 9312 9764 -182405478 - L2 LINE L2 -244 3069 2533 241 192 0 0 chr6 10423 10475 -182404767 + L1MC4 LINE L1 6652 6703 -1339 * 252 167 45 0 chr6 10433 10499 -182404743 - L1MCa LINE L1 -4363 2063 1995 2660 67 15 0 chr6 10525 10866 -182404376 - L1PA7 LINE L1 -4 6150 5805 2915 62 11 0 chr6 10866 11238 -182404004 + L1PA7 LINE L1 5415 5790 -364 3746 178 6 1 chr6 11349 12018 -182403224 - L1PA16 LINE L1 -4 6162 5491 438 224 32 45 chr6 12027 12183 -182403059 + L1MC5 LINE L1 5372 5525 -2283 7626 26 3 0 chr6 12188 13236 -182402006 - L1PA3 LINE L1 0 6155 5105 15162 28 0 0 chr6 13238 15038 -182400204 + L1PA3 LINE L1 3311 5110 -1036 878 234 139 28 chr6 15033 15233 -182400009 + L1MC5 LINE L1 5512 5688 -2120 * 2223 129 0 0 chr6 15233 15543 -182399699 + AluSx SINE Alu 1 310 -2 878 234 139 28 chr6 15543 15730 -182399512 + L1MC5 LINE L1 5688 5942 -1866 21 57 0 0 chr6 15746 15781 -182399461 + AT_rich Low_complexity Low_complexity 1 35 0 445 254 51 30 chr6 16284 16579 -182398663 + L1MC5 LINE L1 7346 7646 -315 259 77 19 58 chr6 16575 16627 -182398615 + L1M2 LINE L1 2829 2878 -3971 * 791 197 0 0 chr6 16629 16771 -182398471 + FLAM_C SINE Alu 1 142 -1 22 0 0 0 chr6 16776 16798 -182398444 + AT_rich Low_complexity Low_complexity 1 22 0 1632 222 23 21 chr6 16801 17234 -182398008 + L1 LINE L1 2863 3296 -3552 943 310 51 66 chr6 17239 18194 -182397048 + L1PA12 LINE L1 950 1890 -5691 * 3393 204 8 3 chr6 18192 18973 -182396269 + L1 LINE L1 4523 5308 -843 1034 218 18 65 chr6 19050 19143 -182396099 + Tigger5 DNA MER2_type 1 97 -2226 2278 79 3 7 chr6 19143 19435 -182395807 + AluSc SINE Alu 5 295 -14 1034 218 18 65 chr6 19435 19570 -182395672 + Tigger5 DNA MER2_type 97 218 -2105 * 2097 200 70 8 chr6 19561 20030 -182395212 + Tigger5 DNA MER2_type 1826 2323 0 277 255 112 53 chr6 20032 20487 -182394755 + L1M4 LINE L1 2969 3450 -2696 3459 212 98 64 chr6 20910 22073 -182393169 + L1M4 LINE L1 830 1952 -4692 1100 79 22 11 chr6 22073 22251 -182392991 + (GAAA)n Simple_repeat Simple_repeat 1 180 0 3459 212 98 64 chr6 22251 23923 -182391319 + L1M4 LINE L1 1952 3752 -2892 849 247 44 8 chr6 23923 24220 -182391022 + L1M4 LINE L1 5336 5637 -1007 576 269 37 103 chr6 24253 24826 -182390416 + L1MC4a LINE L1 6049 6583 -1225 207 222 42 14 chr6 24870 24942 -182390300 + (TA)n Simple_repeat Simple_repeat 2 75 0 411 303 61 19 chr6 25042 25306 -182389936 + L1MC5 LINE L1 7251 7525 -436 254 236 45 64 chr6 25418 25528 -182389714 + L1ME3 LINE L1 5979 6086 -76 23 65 0 16 chr6 26179 26212 -182389030 + AT_rich Low_complexity Low_complexity 1 34 -27 389 43 0 0 chr6 26212 26259 -182388983 - L1PA6 LINE L1 -8 6146 6100 23 65 0 16 chr6 26259 26287 -182388955 + AT_rich Low_complexity Low_complexity 34 61 0 376 364 103 23 chr6 27200 27502 -182387740 - L2 LINE L2 -23 3249 2924 25 31 0 0 chr6 27610 27642 -182387600 + AT_rich Low_complexity Low_complexity 1 32 0 2143 45 15 0 chr6 27702 27968 -182387274 - L1PA5 LINE L1 -4 6150 5881 326 380 60 26 chr6 27971 28205 -182387037 - L2 LINE L2 -606 2708 2467 722 190 92 6 chr6 28454 28617 -182386625 + AluSp SINE Alu 123 299 -14 823 297 60 39 chr6 28793 29228 -182386014 - L1ME3A LINE L1 -219 5951 5508 186 43 0 0 chr6 29263 29286 -182385956 + (TTTTG)n Simple_repeat Simple_repeat 2 24 0 3987 207 28 31 chr6 29286 30300 -182384942 - L1 LINE L1 -1449 4697 3687 1187 281 69 32 chr6 30350 31091 -182384151 - L1ME3A LINE L1 -2027 4119 3352 7089 154 30 11 chr6 31125 31256 -182383986 - L1MA8 LINE L1 -53 6238 6111 4867 107 18 1 chr6 31256 31985 -182383257 + L1MA2 LINE L1 5556 6303 -1 7089 154 30 11 chr6 31985 33967 -182381275 - L1MA8 LINE L1 -180 6111 4083 1790 214 76 15 chr6 34121 34597 -182380645 + LTR22 LTR ERVK 1 505 -4 6340 181 2 7 chr6 34637 35671 -182379571 + L1PA15-16 LINE L1 2 1030 -5819 2686 111 24 0 chr6 35671 36084 -182379158 + L1P4 LINE L1 5268 5690 -478 2105 128 0 0 chr6 36086 36376 -182378866 + AluSq SINE Alu 1 290 -23 260 183 21 54 chr6 36389 36482 -182378760 + L1MC4 LINE L1 6614 6703 -1339 2349 122 16 14 chr6 36507 36978 -182378264 + L1PA8 LINE L1 5648 6077 -77 345 198 83 10 chr6 36957 37053 -182378189 + L1PA8 LINE L1 5946 6048 -124 * 349 214 61 10 chr6 37032 37130 -182378112 + L1PA8 LINE L1 5946 6048 -124 * 364 204 61 10 chr6 37109 37207 -182378035 + L1PA8 LINE L1 5946 6048 -124 342 214 61 10 chr6 37186 37284 -182377958 + L1PA8 LINE L1 5946 6048 -124 * 335 214 71 10 chr6 37263 37361 -182377881 + L1PA8 LINE L1 5946 6049 -123 * 331 236 61 10 chr6 37339 37513 -182377729 + L1PA8 LINE L1 5927 6048 -124 * 329 182 78 0 chr6 37492 37569 -182377673 + L1PA8 LINE L1 5946 6028 -144 * 1329 134 28 0 chr6 37569 37785 -182377457 + L1PA10 LINE L1 5946 6167 -1 538 238 85 75 chr6 37810 38247 -182376995 - L1MEd LINE L1 -4971 1148 708 309 261 23 11 chr6 38254 38342 -182376900 + GA-rich Low_complexity Low_complexity 3 91 0 767 51 0 0 chr6 38428 38526 -182376716 + L1PA5 LINE L1 6055 6152 -2 3030 205 73 11 chr6 38973 39803 -182375439 + L1 LINE L1 2939 3820 -2326 448 273 86 0 chr6 39810 39949 -182375293 + ERVL LTR ERVL 1690 1840 -3924 1779 224 33 0 chr6 39962 40421 -182374821 + L1MA7 LINE L1 3179 3652 -2494 6090 26 1 0 chr6 40437 41158 -182374084 - L1PA4 LINE L1 -180 5975 5254 1409 51 6 0 chr6 41158 41336 -182373906 + L1PA4 LINE L1 5977 6155 0 5100 160 34 33 chr6 41355 42439 -182372803 + L1MA7 LINE L1 3663 4747 -1399 31748 103 16 58 chr6 43613 50033 -182365209 + L1PA7 LINE L1 12 6153 -1 5044 154 48 12 chr6 50781 52286 -182362956 + L1MA7 LINE L1 4736 6287 -4 303 246 40 16 chr6 52561 52687 -182362555 + L1M4 LINE L1 3559 3687 -2459 * 1034 236 112 32 chr6 52670 53226 -182362016 + L1M4 LINE L1 3913 4512 -1634 403 311 68 15 chr6 56169 56301 -182358941 - MIR3 SINE MIR -40 168 30 347 347 7 20 chr6 58278 58428 -182356814 + MIR SINE MIR 1 148 -114 250 184 0 0 chr6 58436 58485 -182356757 + L1MA4 LINE L1 6055 6103 -197 1303 150 4 4 chr6 58501 58748 -182356494 + L1MA4 LINE L1 6049 6295 -5 275 234 36 117 chr6 58797 58934 -182356308 + MIR SINE MIR 136 261 -1 500 191 0 0 chr6 59780 59864 -182355378 + AluS SINE Alu 1 84 -228 180 132 0 113 chr6 61065 61118 -182354124 + L2 LINE L2 3267 3313 0 34 42 0 0 chr6 63309 63357 -182351885 + AT_rich Low_complexity Low_complexity 1 48 0 730 131 0 83 chr6 64026 64171 -182351071 + FLAM_C SINE Alu 1 133 0 227 275 87 47 chr6 64242 64391 -182350851 + HAL1b LINE L1 742 896 -452 453 307 170 37 chr6 64706 65400 -182349842 - L2 LINE L2 0 3313 2485 564 296 169 22 chr6 65414 65681 -182349561 + L2 LINE L2 900 1205 -2109 1139 280 51 42 chr6 65896 66137 -182349105 + MLT1H1 LTR MaLR 1 238 -317 1829 168 42 25 chr6 66137 66495 -182348747 - THE1B LTR MaLR 0 364 1 11090 105 18 8 chr6 66495 68059 -182347183 - THE1B-int LTR MaLR 0 1580 1 1973 147 39 33 chr6 68059 68419 -182346823 - THE1B LTR MaLR 0 364 3 1139 280 51 42 chr6 68419 68700 -182346542 + MLT1H1 LTR MaLR 237 530 -25 247 250 10 62 chr6 68700 68796 -182346446 + MLT1H1-int LTR MaLR 7 97 -1274 749 167 74 6 chr6 69099 69261 -182345981 - LTR64 LTR ERVK 0 558 386 2386 94 52 0 chr6 69263 69625 -182345617 + L1PA14 LINE L1 5781 6161 0 2255 106 0 3 chr6 69762 70064 -182345178 + AluSq SINE Alu 1 301 -12 192 222 111 0 chr6 70579 70633 -182344609 + L2 LINE L2 3254 3313 0 577 325 94 48 chr6 70724 71262 -182343980 + L2 LINE L2 2716 3271 -1 789 342 33 25 chr6 72383 72778 -182342464 + MLT1E LTR MaLR 22 419 -174 527 303 92 43 chr6 72879 73344 -182341898 + L1MEd LINE L1 347 834 -5285 283 233 194 0 chr6 74018 74121 -182341121 - L2 LINE L2 -871 2443 2321 228 255 57 38 chr6 74511 74617 -182340625 + MER65B LTR ERV1 262 369 -162 315 324 40 7 chr6 74737 74885 -182340357 - L1M4 LINE L1 -2470 3676 3524 1207 289 70 13 chr6 75049 75708 -182339534 + L2 LINE L2 2616 3309 -4 490 223 16 31 chr6 75708 75901 -182339341 + L1 LINE L1 3794 3983 -2163 430 278 155 63 chr6 75901 76284 -182338958 + L1 LINE L1 4508 4925 -1221 1710 224 37 26 chr6 76287 76777 -182338465 + MLT1D LTR MaLR 1 495 -10 226 172 92 69 chr6 76778 76865 -182338377 + L1 LINE L1 4924 5012 -1134 846 284 76 29 chr6 77059 77717 -182337525 + L1ME3A LINE L1 5259 5947 -223 203 286 12 12 chr6 78071 78155 -182337087 + (TA)n Simple_repeat Simple_repeat 1 84 0 2166 123 29 45 chr6 78243 78624 -182336618 - THE1C LTR MaLR 0 375 1 419 56 112 0 chr6 79647 79790 -182335452 + (TA)n Simple_repeat Simple_repeat 2 160 0 2495 57 0 0 chr6 79924 80220 -182335022 - AluY SINE Alu -15 296 1 39 68 0 0 chr6 80292 80366 -182334876 + AT_rich Low_complexity Low_complexity 1 74 0 245 164 0 18 chr6 81729 81784 -182333458 + (TATATG)n Simple_repeat Simple_repeat 3 56 0 518 146 0 0 chr6 81823 81919 -182333323 + L1MA5 LINE L1 6200 6295 -5 191 146 24 0 chr6 82062 82103 -182333139 + (TA)n Simple_repeat Simple_repeat 1 42 0 523 257 0 9 chr6 82378 82491 -182332751 + L2 LINE L2 3197 3308 -5 506 382 40 23 chr6 82502 83053 -182332189 + L2 LINE L2 2710 3270 -2 1953 167 13 0 chr6 83216 83516 -182331726 + AluJb SINE Alu 1 304 -8 679 202 21 5 chr6 84689 84877 -182330365 + L1MA4A LINE L1 6112 6302 -1 1291 205 39 35 chr6 84879 85637 -182329605 + L1M4c LINE L1 1451 2302 -4082 21 36 0 0 chr6 85771 85799 -182329443 + AT_rich Low_complexity Low_complexity 1 28 0 369 242 158 33 chr6 86186 86306 -182328936 - L2 LINE L2 -1 3312 3178 1992 130 0 0 chr6 86420 86690 -182328552 - AluSx SINE Alu -42 270 1 285 261 39 78 chr6 87131 87236 -182328006 - L2 LINE L2 -5 3308 3209 2343 107 0 0 chr6 87236 87544 -182327698 - AluSq SINE Alu -5 308 1 285 261 39 78 chr6 87544 87591 -182327651 - L2 LINE L2 -104 3209 3162 1837 113 3 65 chr6 88031 88324 -182326918 - AluSx SINE Alu -1 311 37 716 119 0 18 chr6 88326 88435 -182326807 - FLAM_C SINE Alu -8 135 29 688 158 0 0 chr6 88439 88540 -182326702 + FLAM_C SINE Alu 3 103 -40 874 206 25 0 chr6 88541 88647 -182326595 + L1M3f LINE L1 1123 1225 -5104 2247 100 3 23 chr6 88647 88956 -182326286 + AluSg SINE Alu 1 303 -7 874 206 25 0 chr6 88956 89392 -182325850 + L1M3f LINE L1 1225 2091 -4238 444 150 13 8 chr6 89407 89642 -182325600 + AluSq SINE Alu 1 313 0 2193 109 0 0 chr6 92723 93026 -182322216 - AluSg SINE Alu -7 303 1 1664 181 0 7 chr6 94413 94711 -182320531 - AluJo SINE Alu -16 296 1 353 226 39 49 chr6 94822 94924 -182320318 + MER8 DNA MER2_type 3 103 -136 966 214 0 5 chr6 94924 95111 -182320131 + AluJb SINE Alu 117 302 -10 1183 49 3 38 chr6 95129 95480 -182319762 + (CCCTAA)n Simple_repeat Simple_repeat 1 338 0 801 177 38 16 chr6 95480 95666 -182319576 - TAR1 Satellite telomeric -237 1874 1685 4157 158 28 13 chr6 95685 96859 -182318383 - TAR1 Satellite telomeric -1350 1191 1 891 187 64 132 chr6 96706 97176 -182318066 - LTR60 LTR ERV1 -43 543 106 * 478 217 9 0 chr6 97212 97318 -182317924 - LTR60 LTR ERV1 -479 107 1 1019 227 85 26 chr6 97334 97946 -182317296 + L1MC/D LINE L1 4898 5546 -745 2703 155 46 16 chr6 97957 98517 -182316725 + MER34C LTR ERV1 7 583 -2 518 266 16 11 chr6 98522 98710 -182316532 + L1MC/D LINE L1 5577 5765 -2020 583 143 10 0 chr6 98923 99021 -182316221 + MER72 LTR ERV1 1 99 -623 208 129 32 48 chr6 100933 100995 -182314247 + (CAAA)n Simple_repeat Simple_repeat 2 62 0 193 57 57 0 chr6 101181 101216 -182314026 + (TCTA)n Simple_repeat Simple_repeat 2 38 0 798 276 18 5 chr6 101344 101565 -182313677 + MER58A DNA MER1_type 1 224 0 330 285 124 32 chr6 102263 102449 -182312793 + MIR SINE MIR 54 256 -6 216 0 0 0 chr6 103072 103096 -182312146 + (T)n Simple_repeat Simple_repeat 1 24 0 204 184 0 0 chr6 103978 104027 -182311215 + CT-rich Low_complexity Low_complexity 2 50 0 180 204 102 0 chr6 104880 104929 -182310313 - L2 LINE L2 -71 3201 3148 16323 76 11 5 chr6 106361 107478 -182307764 + L1PA7 LINE L1 3133 4242 -1912 2366 78 0 0 chr6 107478 107786 -182307456 + AluY SINE Alu 1 308 -3 16323 76 11 5 chr6 107786 109586 -182305656 + L1PA7 LINE L1 4242 6059 -95 757 155 88 52 chr6 109576 109770 -182305472 - L1 LINE L1 -1835 4311 4111 * 2102 171 100 23 chr6 109772 109816 -182305426 + L1MB2 LINE L1 5653 5692 -479 2094 95 14 3 chr6 109816 110111 -182305131 - AluY SINE Alu -13 298 1 2102 171 100 23 chr6 110111 110546 -182304696 + L1MB2 LINE L1 5692 6169 -2 364 317 57 0 chr6 110546 110669 -182304573 + L1M4 LINE L1 2336 2465 -3681 5798 95 44 10 chr6 110672 111515 -182303727 + L1PB1 LINE L1 5231 6105 -46 1967 88 74 0 chr6 111515 111798 -182303444 + AluY SINE Alu 1 304 -7 5798 95 44 10 chr6 111798 111846 -182303396 + L1PB1 LINE L1 6105 6150 -1 437 253 43 56 chr6 112572 112734 -182302508 + MIR SINE MIR 67 226 -36 719 220 84 5 chr6 112758 112949 -182302293 + MER46C DNA MER2_type 1 206 -132 1018 174 12 0 chr6 113265 113432 -182301810 - FAM SINE Alu -5 170 2 2279 84 0 3 chr6 113943 114252 -182300990 + AluY SINE Alu 1 308 -3 2000 98 0 69 chr6 114469 114787 -182300455 + AluSg SINE Alu 1 296 -14 2132 124 0 0 chr6 115670 115976 -182299266 + AluSg SINE Alu 1 306 -4 364 208 66 9 chr6 115987 116093 -182299149 + L1MA9 LINE L1 6164 6275 -37 224 54 54 0 chr6 116096 116133 -182299109 + A-rich Low_complexity Low_complexity 3 41 0 21 0 0 0 chr6 117677 117698 -182297544 + AT_rich Low_complexity Low_complexity 1 21 0 797 166 0 22 chr6 118569 118708 -182296534 + AluJo SINE Alu 2 137 -175 881 190 6 11 chr6 118740 118919 -182296323 + AluJo SINE Alu 118 295 -17 2059 157 6 28 chr6 118945 119308 -182295934 + THE1A LTR MaLR 1 355 0 11184 110 16 3 chr6 119308 120868 -182294374 + THE1B-int LTR MaLR 1 1580 0 2100 139 45 31 chr6 120868 121227 -182294015 + THE1B LTR MaLR 1 364 0 1499 181 44 0 chr6 121329 121644 -182293598 + L1M1 LINE L1 4808 5136 -1010 2140 197 75 8 chr6 121647 122125 -182293117 + L1M1 LINE L1 5255 5764 -536 2003 101 4 4 chr6 122602 122878 -182292364 + AluSp SINE Alu 1 276 -37 429 83 28 0 chr6 122878 122950 -182292292 + AluSp/q SINE Alu 238 311 -2 303 261 65 94 chr6 123006 123144 -182292098 - HAL1b LINE L1 -546 802 669 226 153 71 24 chr6 123322 123407 -182291835 + (TTAA)n Simple_repeat Simple_repeat 1 89 0 367 295 86 43 chr6 123545 123684 -182291558 - HAL1b LINE L1 -884 464 320 1970 127 0 3 chr6 123701 123992 -182291250 + AluSq SINE Alu 1 290 -23 2265 96 0 0 chr6 124563 124864 -182290378 + AluSg SINE Alu 1 301 -9 2007 130 3 3 chr6 124931 125238 -182290004 - AluSx SINE Alu -5 307 1 4661 163 86 121 chr6 125267 126069 -182289173 + pTR5 LTR ERV1 5 4294966559 -1451 5286 84 98 7 chr6 126069 126826 -182288416 - LTR12 LTR ERV1 0 826 1 4661 163 86 121 chr6 126826 128201 -182287041 + pTR5 LTR ERV1 -738 682 -32 183 310 35 58 chr6 128283 128370 -182286872 - L3 LINE CR1 -59 1518 1434 2309 72 3 3 chr6 129532 129836 -182285406 + AluSp SINE Alu 1 304 -9 278 253 181 0 chr6 130424 130507 -182284735 + L3 LINE CR1 1356 1453 -124 402 305 222 11 chr6 132549 132828 -182282414 + L1ME4a LINE L1 5721 6058 -63 625 251 98 46 chr6 132841 133184 -182282058 + LTR40c LTR ERVL 27 438 -24 749 207 22 137 chr6 133233 133503 -182281739 - MER8 DNA MER2_type 0 239 1 303 347 65 6 chr6 134009 134179 -182281063 - MIR SINE MIR -82 180 1 2250 60 0 23 chr6 135812 136112 -182279130 - AluY SINE Alu -18 293 1 241 357 51 0 chr6 136136 136234 -182279008 - L2 LINE L2 -38 3234 3132 1276 208 46 74 chr6 137765 138159 -182277083 - MLT1B LTR MaLR -7 383 1 662 191 121 0 chr6 139711 139868 -182275374 - MER45A DNA AcHobo 0 178 3 2029 108 7 3 chr6 140245 140542 -182274700 + AluSc SINE Alu 1 298 -11 598 88 7 51 chr6 140792 140929 -182274313 + (TG)n Simple_repeat Simple_repeat 2 132 0 768 274 91 4 chr6 140984 141214 -182274028 + MIR SINE MIR 2 251 -11 2273 98 0 0 chr6 142045 142342 -182272900 + AluSx SINE Alu 1 297 -15 1277 246 20 6 chr6 142698 143048 -182272194 + L1MB3 LINE L1 4697 5051 -1095 377 236 0 124 chr6 143851 144012 -182271230 + L2 LINE L2 3173 3313 0 928 159 0 14 chr6 144025 144383 -182270859 + (TGGA)n Simple_repeat Simple_repeat 4 354 0 2032 136 0 0 chr6 144458 144752 -182270490 - AluSx SINE Alu -18 294 1 2121 121 0 0 chr6 145333 145631 -182269611 + AluSq SINE Alu 13 310 -3 2171 105 16 0 chr6 146211 146515 -182268727 + AluSc SINE Alu 1 309 0 2174 86 7 10 chr6 146761 147052 -182268190 + AluSx SINE Alu 1 290 -22 1622 153 67 0 chr6 148243 148525 -182266717 - AluSx SINE Alu -11 301 1 2075 113 3 10 chr6 148643 148945 -182266297 - AluSc SINE Alu -9 300 1 2126 172 21 23 chr6 149583 149972 -182265270 - LTR45B LTR ERV1 -98 391 4 319 251 46 0 chr6 149977 150109 -182265133 + L1MB3 LINE L1 5337 5479 -691 1301 209 116 15 chr6 150179 150575 -182264667 + L1MD2 LINE L1 5693 6131 -228 357 202 46 55 chr6 150654 150763 -182264479 + MER5A DNA MER1_type 82 189 0 204 272 67 77 chr6 151095 151290 -182263952 + L2 LINE L2 2252 2444 -870 220 216 27 95 chr6 151597 151671 -182263571 + L2 LINE L2 3201 3269 -3 699 150 9 0 chr6 152000 152124 -182263118 - MER46A DNA MER2_type -5 221 107 837 198 77 0 chr6 152439 152621 -182262621 + MER20 DNA MER1_type 3 198 -21 343 232 84 84 chr6 154079 154234 -182261008 - L1MCa LINE L1 -4342 2084 1930 260 223 27 115 chr6 154526 154546 -182260696 - L2 LINE L2 0 3272 3252 1101 190 68 0 chr6 154546 154767 -182260475 + MER46A DNA MER2_type 1 236 0 260 223 27 115 chr6 154767 154894 -182260348 - L2 LINE L2 -20 3252 3138 * 281 179 0 75 chr6 154887 154954 -182260288 + MIR3 SINE MIR 94 155 -53 1906 138 3 20 chr6 155106 155410 -182259832 - AluSx SINE Alu -13 299 1 2068 116 0 0 chr6 155447 155755 -182259487 + AluSx SINE Alu 1 308 0 244 258 32 0 chr6 156171 156233 -182259009 - MIR SINE MIR -117 145 82 214 208 42 0 chr6 156886 156934 -182258308 + MIR SINE MIR 117 166 -96 283 205 26 51 chr6 159406 159484 -182255758 - L1MC4 LINE L1 -182 7860 7785 2747 200 48 2 chr6 159752 160353 -182254889 + L1MB3 LINE L1 5546 6174 -9 2150 88 7 17 chr6 160353 160649 -182254593 - AluSq SINE Alu -20 293 1 4094 174 88 3 chr6 161188 161948 -182253294 + LTR1B LTR ERV1 2 826 0 482 316 11 27 chr6 162572 162759 -182252483 + MIR SINE MIR 78 261 -1 492 296 106 22 chr6 163353 163579 -182251663 - MIR SINE MIR -1 261 17 2218 97 3 0 chr6 163769 164069 -182251173 - AluSq SINE Alu -12 301 1 228 222 0 0 chr6 164175 164220 -182251022 + MER5A DNA MER1_type 145 189 0 236 164 36 0 chr6 164327 164382 -182250860 + (TA)n Simple_repeat Simple_repeat 2 58 0 345 317 80 30 chr6 165219 165418 -182249824 + MIR SINE MIR 34 242 -20 297 268 110 47 chr6 165508 165635 -182249607 + L2 LINE L2 3122 3256 -16 191 281 61 0 chr6 165880 165962 -182249280 + MIR SINE MIR 23 109 -153 542 218 58 13 chr6 167149 167305 -182247937 - MIR3 SINE MIR -10 198 36 327 252 59 34 chr6 167774 167893 -182247349 - L1M4 LINE L1 -1618 4528 4407 673 243 93 4 chr6 167901 168148 -182247094 - L1MC4 LINE L1 -6 8036 7768 2129 153 19 48 chr6 169498 169910 -182245332 - MER57A LTR ERV1 -3 400 1 2441 202 50 47 chr6 171181 171781 -182243461 - MER7C DNA MER2_type 0 602 1 428 290 32 9 chr6 172292 172438 -182242804 + MER5B DNA MER1_type 32 174 -4 367 281 92 12 chr6 172438 172602 -182242640 + MLT1L LTR MaLR 144 320 -295 196 288 72 39 chr6 173226 173350 -182241892 + MIR3 SINE MIR 51 179 -54 1219 280 77 70 chr6 174280 174920 -182240322 - MER21B LTR ERV1 -196 667 24 270 257 257 0 chr6 175271 175419 -182239823 - MLT1L LTR MaLR -17 598 413 201 304 14 0 chr6 175797 175866 -182239376 + GA-rich Low_complexity Low_complexity 4 73 0 1994 103 46 0 chr6 176010 176292 -182238950 - AluSq SINE Alu -17 296 2 25 0 0 0 chr6 176317 176342 -182238900 + AT_rich Low_complexity Low_complexity 1 25 0 324 274 0 42 chr6 177366 177461 -182237781 + L1MC4 LINE L1 6614 6704 -1338 * 462 322 132 60 chr6 177386 177647 -182237595 - L1MC4a LINE L1 -1834 5974 5733 432 97 0 0 chr6 177647 177709 -182237533 + (TAGA)n Simple_repeat Simple_repeat 3 64 0 462 322 132 60 chr6 177709 178112 -182237130 - L1MC4a LINE L1 -2075 5733 5262 2367 56 0 7 chr6 178566 178872 -182236370 - AluY SINE Alu -7 304 1 286 337 131 29 chr6 179430 179605 -182235637 - MIR3 SINE MIR -7 201 9 3824 90 13 26 chr6 179668 180202 -182235040 - MER1A DNA MER1_type 0 527 1 209 297 62 0 chr6 180435 180499 -182234743 - MIR SINE MIR -74 188 121 1357 205 160 18 chr6 180499 180899 -182234343 + MLT1C LTR MaLR 4 460 -7 200 302 40 79 chr6 180899 181025 -182234217 - MIR3 SINE MIR -73 135 15 200 128 0 26 chr6 181277 181316 -182233926 + (TAA)n Simple_repeat Simple_repeat 1 38 0 2130 115 3 0 chr6 181352 181657 -182233585 - AluSg SINE Alu -4 306 1 2067 103 0 7 chr6 181691 181973 -182233269 + AluSg SINE Alu 1 280 -30 189 259 52 0 chr6 182044 182102 -182233140 - MIR SINE MIR -122 140 80 2145 131 0 0 chr6 182700 183012 -182232230 - AluSx SINE Alu 0 312 1 665 169 0 25 chr6 183221 183381 -182231861 + GA-rich Low_complexity Low_complexity 2 157 0 308 62 0 21 chr6 183489 183537 -182231705 + (TCTCCC)n Simple_repeat Simple_repeat 1 47 0 350 281 0 0 chr6 183539 183635 -182231607 + CT-rich Low_complexity Low_complexity 1 96 0 506 291 62 39 chr6 184670 185027 -182230215 + L1ME4a LINE L1 5523 5887 -234 2296 72 3 0 chr6 185028 185321 -182229921 - AluSq SINE Alu -19 294 1 926 141 224 0 chr6 186100 186292 -182228950 - L1MA4A LINE L1 -6 6297 6063 1740 122 44 7 chr6 186305 186575 -182228667 + AluSx SINE Alu 30 309 -3 508 273 130 19 chr6 187530 187684 -182227558 - MIR3 SINE MIR -7 201 31 467 226 63 95 chr6 188226 188395 -182226847 + ORSL DNA AcHobo 28 188 -87 2319 75 3 3 chr6 188395 188701 -182226541 - AluSp SINE Alu -7 306 1 467 226 63 95 chr6 188701 188783 -182226459 + ORSL DNA AcHobo 188 271 -4 183 297 203 0 chr6 188848 188922 -182226320 + MIR SINE MIR 118 206 -56 468 159 0 0 chr6 189459 189528 -182225714 + Tigger2 DNA MER2_type 1 69 -2649 * 2332 104 28 11 chr6 189526 189882 -182225360 + Tigger2 DNA MER2_type 2280 2641 -77 10661 134 8 5 chr6 189882 192638 -182222604 + L1MA3 LINE L1 3540 6305 0 443 224 24 0 chr6 192658 192743 -182222499 + Tigger2 DNA MER2_type 2632 2718 0 975 204 91 18 chr6 192791 193065 -182222177 + LTR37A LTR ERV1 98 391 -35 337 195 39 0 chr6 193354 193431 -182221811 - MER116 DNA Mariner 0 80 1 1607 111 0 0 chr6 194261 194486 -182220756 + AluSg/x SINE Alu 88 312 0 6363 196 39 54 chr6 194752 195443 -182219799 - L1MB7 LINE L1 0 6184 5484 2059 90 32 0 chr6 195443 195722 -182219520 - AluSg SINE Alu -22 288 1 6363 196 39 54 chr6 195722 196449 -182218793 - L1MB7 LINE L1 -700 5484 4748 4120 102 17 107 chr6 196449 196773 -182218469 - L1MA3 LINE L1 0 6305 6090 2222 97 0 3 chr6 196773 197071 -182218171 - AluSx SINE Alu -11 301 5 4120 102 17 107 chr6 197071 197519 -182217723 - L1MA3 LINE L1 -215 6090 5603 6363 196 39 54 chr6 197519 198739 -182216503 - L1MB7 LINE L1 -1436 4748 3584 2286 85 3 0 chr6 198739 199034 -182216208 + AluSp SINE Alu 3 298 -15 6363 196 39 54 chr6 199034 199174 -182216068 - L1MB7 LINE L1 -2600 3584 3443 2196 101 0 0 chr6 200967 201263 -182213979 - AluSx SINE Alu -16 296 1 492 267 23 80 chr6 201923 202071 -182213171 + MIR3 SINE MIR 16 154 -54 1424 177 83 3 chr6 202071 202359 -182212883 - AluJo SINE Alu -1 311 1 492 267 23 80 chr6 202359 202386 -182212856 + MIR3 SINE MIR 154 181 -27 189 333 0 25 chr6 203581 203662 -182211580 - MIR3 SINE MIR -7 201 123 2213 110 3 3 chr6 203957 204258 -182210984 - AluSx SINE Alu -11 301 1 24 32 0 0 chr6 204321 204352 -182210890 + AT_rich Low_complexity Low_complexity 1 31 0 1877 128 56 36 chr6 205837 206174 -182209068 - L1PA16 LINE L1 -9 6157 5814 1382 179 0 21 chr6 206200 206434 -182208808 - AluJo SINE Alu -83 229 1 877 125 0 0 chr6 206438 206566 -182208676 - L1PA16 LINE L1 -341 5825 5698 306 218 90 0 chr6 206913 206991 -182208251 - L2 LINE L2 -4 3309 3225 1476 99 54 14 chr6 207093 207314 -182207928 - MER30 DNA MER1_type 0 230 1 9546 209 47 27 chr6 207625 208747 -182206495 - L1MB4 LINE L1 -1 6179 5080 1597 164 70 10 chr6 208747 209046 -182206196 - L1MC1 LINE L1 -1 6332 6016 9546 209 47 27 chr6 209046 209226 -182206016 - L1MB4 LINE L1 -1100 5080 4905 2314 89 0 4 chr6 209226 209567 -182205675 + AluY SINE Alu 3 342 0 9546 209 47 27 chr6 209567 211199 -182204043 - L1MB4 LINE L1 -1275 4905 3306 2262 115 0 0 chr6 211199 211494 -182203748 - AluSc SINE Alu -14 295 1 9546 209 47 27 chr6 211494 211658 -182203584 - L1MB4 LINE L1 -2874 3306 3147 2220 102 0 0 chr6 211658 211968 -182203274 + AluSx SINE Alu 1 310 0 9546 209 47 27 chr6 211968 212540 -182202702 - L1MB4 LINE L1 -3033 3147 2424 21 0 0 0 chr6 212716 212737 -182202505 + AT_rich Low_complexity Low_complexity 1 21 0 1643 243 98 22 chr6 213649 214330 -182200912 + L1ME2 LINE L1 5214 5953 -211 1902 148 7 20 chr6 214348 214651 -182200591 + AluSx SINE Alu 1 299 -13 2497 189 54 69 chr6 214797 215320 -182199922 + L1MC3 LINE L1 6499 7011 -774 5029 28 0 0 chr6 215320 215892 -182199350 + L1PA3 LINE L1 5584 6155 0 2497 189 54 69 chr6 215892 216067 -182199175 + L1MC3 LINE L1 7011 7187 -598 * 8793 218 102 34 chr6 216064 217552 -182197690 - L1M3 LINE L1 -399 6020 4635 189 0 0 0 chr6 217552 217573 -182197669 + (TG)n Simple_repeat Simple_repeat 2 22 0 8793 218 102 34 chr6 217573 217688 -182197554 - L1M3 LINE L1 -1784 4635 4529 348 215 13 0 chr6 217688 217767 -182197475 + MLT1A2 LTR MaLR 1 80 -294 8793 218 102 34 chr6 217767 218246 -182196996 - L1M3 LINE L1 -1890 4529 4084 243 0 0 0 chr6 218246 218273 -182196969 + (TTTA)n Simple_repeat Simple_repeat 1 27 0 8793 218 102 34 chr6 218273 218325 -182196917 - L1M3 LINE L1 -2335 4084 4037 2189 92 0 0 chr6 218325 218598 -182196644 - AluSx SINE Alu 0 312 40 8793 218 102 34 chr6 218598 220405 -182194837 - L1M3 LINE L1 -2382 4037 1716 1292 129 119 61 chr6 220405 220715 -182194527 - L1M3 LINE L1 -5052 1332 1005 223 146 42 0 chr6 220715 220763 -182194479 + (TA)n Simple_repeat Simple_repeat 2 51 0 24 53 0 0 chr6 220886 220924 -182194318 + AT_rich Low_complexity Low_complexity 1 38 0 835 193 0 0 chr6 220924 221064 -182194178 - L1M3 LINE L1 -5709 675 536 690 215 0 20 chr6 221071 221220 -182194022 - L1M3 LINE L1 -6217 167 22 1107 221 108 65 chr6 221288 221561 -182193681 + MLT1E2 LTR MaLR 211 508 -118 2055 142 7 3 chr6 221561 221870 -182193372 - AluSx SINE Alu -2 310 1 1107 221 108 65 chr6 221870 221995 -182193247 + MLT1E2 LTR MaLR 508 626 0 24 53 0 0 chr6 222435 222473 -182192769 + AT_rich Low_complexity Low_complexity 1 38 0 381 306 95 18 chr6 222575 222797 -182192445 + MIR SINE MIR 7 245 -17 397 165 71 0 chr6 222972 223057 -182192185 - MLT1L LTR MaLR -2 613 523 3746 238 44 14 chr6 223066 224120 -182191122 - L1M4 LINE L1 -1480 4666 3582 356 134 149 0 chr6 224109 224176 -182191066 + L1MB4 LINE L1 5807 5883 -297 * 401 213 64 0 chr6 224189 224283 -182190959 - L1M4 LINE L1 -2553 3593 3494 1770 160 86 54 chr6 224319 224350 -182190892 - L1MB4 LINE L1 -21 6159 6130 2443 93 0 0 chr6 224350 224651 -182190591 - AluSx SINE Alu -11 301 1 1770 160 86 54 chr6 224651 225105 -182190137 - L1MB4 LINE L1 -50 6130 5645 400 186 41 21 chr6 225104 225201 -182190041 - L1MCc LINE L1 -5142 1281 1183 * 1215 229 92 19 chr6 225208 225632 -182189610 - L1MCc LINE L1 -5184 1239 785 802 144 86 0 chr6 225649 225823 -182189419 - MER53 DNA DNA 0 189 1 539 294 73 29 chr6 226333 226605 -182188637 - L1MCc LINE L1 -6086 337 54 926 180 77 0 chr6 227293 227487 -182187755 - MLT1B LTR MaLR -81 309 101 2542 81 0 0 chr6 227575 227882 -182187360 - AluY SINE Alu -4 307 1 288 348 52 40 chr6 228234 228582 -182186660 + L2 LINE L2 2305 2656 -658 298 267 200 13 chr6 228923 229073 -182186169 + MIR SINE MIR 29 206 -56 206 269 0 0 chr6 229100 229152 -182186090 - MIR SINE MIR -25 237 186 181 343 30 20 chr6 229130 229229 -182186013 + L2 LINE L2 2979 3078 -194 * 1427 186 93 21 chr6 229456 229790 -182185452 - MLT1B LTR MaLR -29 361 4 352 210 12 0 chr6 231575 231656 -182183586 + L2 LINE L2 3190 3271 -1 499 247 0 0 chr6 232327 232420 -182182822 + MER81 DNA DNA 2 94 -20 2160 121 0 3 chr6 233544 233841 -182181401 + AluSx SINE Alu 1 296 -16 29 0 0 0 chr6 233987 234016 -182181226 + AT_rich Low_complexity Low_complexity 1 29 0 300 20 61 0 chr6 235247 235296 -182179946 + (TC)n Simple_repeat Simple_repeat 2 53 0 218 297 99 0 chr6 235511 235622 -182179620 - L2 LINE L2 -10 3262 3141 842 219 31 0 chr6 236396 236556 -182178686 + MER20 DNA MER1_type 55 219 0 2349 88 0 0 chr6 237220 237515 -182177727 - AluSx SINE Alu -17 295 1 22 0 0 0 chr6 237521 237543 -182177699 + AT_rich Low_complexity Low_complexity 1 22 0 327 332 182 23 chr6 238453 238887 -182176355 - L2 LINE L2 0 3313 2811 267 247 111 0 chr6 238893 238974 -182176268 - L2 LINE L2 0 3313 3224 189 0 0 0 chr6 241288 241309 -182173933 + (T)n Simple_repeat Simple_repeat 1 21 0 199 288 0 0 chr6 241789 241848 -182173394 - L2 LINE L2 -9 3304 3246 1232 144 40 104 chr6 241912 242258 -182172984 - MER33 DNA MER1_type 0 324 1 1842 147 0 77 chr6 242984 243310 -182171932 + AluJb SINE Alu 1 301 -11 407 227 117 23 chr6 243799 243927 -182171315 - MIR SINE MIR -87 175 36 259 203 55 78 chr6 244307 244435 -182170807 + 7SK RNA RNA 1 125 -68 183 261 46 31 chr6 244664 244729 -182170513 - MIR3 SINE MIR -3 205 140 * 202 175 38 138 chr6 244716 244796 -182170446 + MIR SINE MIR 121 192 -70 851 215 75 5 chr6 244975 245175 -182170067 - MER20 DNA MER1_type -4 215 2 192 328 16 0 chr6 246298 246359 -182168883 - L2 LINE L2 -39 3233 3172 322 250 10 21 chr6 247575 247671 -182167571 + Charlie8 DNA MER1_type 25 119 -2298 330 254 296 14 chr6 248276 248489 -182166753 - LTR67 LTR ERVL -8 549 277 22 56 0 0 chr6 249402 249438 -182165804 + AT_rich Low_complexity Low_complexity 1 36 0 450 193 203 36 chr6 250237 250554 -182164688 - MER31B LTR ERV1 -8 477 4 183 258 61 15 chr6 251361 251427 -182163815 + MER5A DNA MER1_type 121 189 0 2367 170 22 5 chr6 252165 252611 -182162631 - L1MB3 LINE L1 -1 6182 5729 248 208 65 13 chr6 253711 253788 -182161454 - L1MB3 LINE L1 -467 5654 5574 193 284 25 37 chr6 254074 254155 -182161087 - L2 LINE L2 0 3313 3234 253 227 0 41 chr6 254759 254856 -182160386 + CT-rich Low_complexity Low_complexity 3 95 0 184 214 24 0 chr6 255652 255694 -182159548 - MER5A DNA MER1_type -143 46 4 523 239 22 0 chr6 256162 256296 -182158946 + L1MB7 LINE L1 6035 6171 -13 329 257 46 18 chr6 256722 256831 -182158411 - LTR56 LTR ERV1 -333 112 1 198 274 39 0 chr6 257062 257113 -182158129 + MER5A DNA MER1_type 42 94 -95 360 0 0 0 chr6 257171 257211 -182158031 + (CA)n Simple_repeat Simple_repeat 2 41 0 329 250 117 0 chr6 257296 257416 -182157826 - L1ME4a LINE L1 -175 5946 5813 2022 129 0 7 chr6 257425 257750 -182157492 - AluSx SINE Alu 0 312 1 23 0 0 0 chr6 258217 258240 -182157002 + AT_rich Low_complexity Low_complexity 1 23 0 863 247 109 31 chr6 258432 258845 -182156397 - LTR56 LTR ERV1 0 445 1 2683 36 0 0 chr6 258888 259192 -182156050 + AluY SINE Alu 1 304 -7 22 0 0 0 chr6 260453 260475 -182154767 + AT_rich Low_complexity Low_complexity 1 22 0 231 350 59 21 chr6 262799 262985 -182152257 - MIR3 SINE MIR -13 195 3 355 319 9 9 chr6 263017 263133 -182152109 - L1ME4a LINE L1 -513 5608 5493 225 246 101 14 chr6 263255 263324 -182151918 - L2 LINE L2 -4 3309 3235 208 250 2 50 chr6 263670 263754 -182151488 - MIR SINE MIR -133 75 10 414 324 48 2 chr6 266216 266467 -182148775 + L1MC4a LINE L1 5664 5817 -304 21 0 0 0 chr6 266625 266646 -182148596 + AT_rich Low_complexity Low_complexity 1 21 0 231 259 151 82 chr6 268372 268689 -182146553 - L2 LINE L2 -8 3264 2926 278 344 78 52 chr6 268776 269046 -182146196 - L2 LINE L2 -495 2819 2543 488 312 56 47 chr6 269063 269297 -182145945 + L1M4 LINE L1 2252 2487 -3659 283 265 15 0 chr6 269472 269540 -182145702 - L2 LINE L2 -1025 2289 2221 279 221 53 18 chr6 269548 269661 -182145581 + (CATATA)n Simple_repeat Simple_repeat 2 118 0 300 53 0 0 chr6 270720 270758 -182144484 + (TG)n Simple_repeat Simple_repeat 2 39 0 224 217 14 72 chr6 275475 275544 -182139698 - MIR SINE MIR -7 255 191 236 314 108 0 chr6 275793 275895 -182139347 - MER58B DNA MER1_type -40 301 189 243 292 71 82 chr6 276571 276852 -182138390 - L2 LINE L2 -340 2974 2697 1151 155 52 44 chr6 278046 278263 -182136979 + L1MB3 LINE L1 5921 6142 -41 2265 99 7 3 chr6 278263 278555 -182136687 - AluSg SINE Alu -17 293 1 1151 155 52 44 chr6 278555 278589 -182136653 + L1MB3 LINE L1 6142 6174 -9 226 178 0 22 chr6 280911 280956 -182134286 - L2 LINE L2 -6 3266 3223 215 238 0 0 chr6 281431 281473 -182133769 + T-rich Low_complexity Low_complexity 2 43 0 1332 219 25 9 chr6 284309 284624 -182130618 - MER33 DNA MER1_type 0 324 5 226 229 84 48 chr6 286017 286100 -182129142 + MIR SINE MIR 57 142 -120 822 188 7 0 chr6 286442 286586 -182128656 - L1PB4 LINE L1 -12 6144 6000 257 220 250 20 chr6 288069 288169 -182127073 + MIR SINE MIR 90 212 -50 227 279 163 0 chr6 291303 291389 -182123853 + Charlie8 DNA MER1_type 4 103 -2314 267 306 0 0 chr6 292444 292516 -182122726 + (TG)n Simple_repeat Simple_repeat 1 72 0 1786 179 3 16 chr6 293084 293392 -182121850 - AluJb SINE Alu -8 304 1 221 340 70 10 chr6 293475 293575 -182121667 - MIR3 SINE MIR -94 114 9 1003 155 23 76 chr6 293999 294019 -182121223 + L1MA6 LINE L1 6051 6071 -229 2133 96 45 3 chr6 294019 294311 -182120931 - AluSx SINE Alu -8 304 1 1003 155 23 76 chr6 294311 294554 -182120688 + L1MA6 LINE L1 6071 6300 0 315 0 0 0 chr6 295231 295266 -182119976 + (CA)n Simple_repeat Simple_repeat 2 36 0 227 279 0 0 chr6 295304 295365 -182119877 + MIR SINE MIR 194 254 -8 252 339 24 42 chr6 295893 296061 -182119181 + MER5B DNA MER1_type 13 177 -1 472 298 7 0 chr6 298005 298156 -182117086 + (TG)n Simple_repeat Simple_repeat 1 152 0 1869 142 110 23 chr6 302018 302328 -182112914 + MER1B DNA MER1_type 1 337 0 206 321 74 60 chr6 302421 302636 -182112606 - L2 LINE L2 -212 3060 2843 2025 146 0 0 chr6 303701 303981 -182111261 - AluSx SINE Alu -32 280 1 2291 109 0 3 chr6 305164 305467 -182109775 + AluSq SINE Alu 1 302 -11 347 325 162 0 chr6 306534 306725 -182108517 - MIR SINE MIR -8 254 33 315 0 0 0 chr6 313587 313622 -182101620 + (T)n Simple_repeat Simple_repeat 1 35 0 1131 231 60 36 chr6 314113 314159 -182101083 - L1MB7 LINE L1 0 6184 6141 1929 91 4 0 chr6 314159 314401 -182100841 + AluSp SINE Alu 61 303 -10 1131 231 60 36 chr6 314401 314718 -182100524 - L1MB7 LINE L1 -43 6141 5812 728 200 92 0 chr6 314779 314974 -182100268 + MER20 DNA MER1_type 1 213 -6 426 338 12 12 chr6 316103 316263 -182098979 + (CA)n Simple_repeat Simple_repeat 1 160 0 214 246 17 39 chr6 316309 316488 -182098754 + (CATA)n Simple_repeat Simple_repeat 4 178 0 416 259 43 9 chr6 316590 316706 -182098536 - MIR SINE MIR -111 151 32 2123 117 0 0 chr6 317424 317714 -182097528 - AluSc SINE Alu -19 290 1 272 141 99 14 chr6 317976 318047 -182097195 - L1MA8 LINE L1 -6 6285 6209 * 835 181 18 0 chr6 318043 318214 -182097028 + L1MA8 LINE L1 6049 6222 -69 317 316 105 26 chr6 318836 319102 -182096140 - Charlie7 DNA MER1_type -1926 686 400 326 287 11 0 chr6 319775 319869 -182095373 + (TAG)n Simple_repeat Simple_repeat 2 96 0 456 237 0 0 chr6 319870 320043 -182095199 + (CAG)n Simple_repeat Simple_repeat 2 174 0 507 233 0 0 chr6 320057 320317 -182094925 + (CAG)n Simple_repeat Simple_repeat 1 260 0 471 248 0 0 chr6 320332 320659 -182094583 + (CAG)n Simple_repeat Simple_repeat 1 327 0 459 237 0 0 chr6 320674 320851 -182094391 + (CAG)n Simple_repeat Simple_repeat 2 178 0 462 245 0 0 chr6 320866 321160 -182094082 + (CAG)n Simple_repeat Simple_repeat 1 294 0 504 232 0 0 chr6 321175 321352 -182093890 + (CAG)n Simple_repeat Simple_repeat 2 178 0 495 235 0 0 chr6 321364 321645 -182093597 + (CAG)n Simple_repeat Simple_repeat 1 281 0 452 243 3 5 chr6 321670 322282 -182092960 + (CAG)n Simple_repeat Simple_repeat 1 611 0 291 256 128 0 chr6 322282 322368 -182092874 - MIR SINE MIR 0 262 166 327 264 72 1 chr6 322690 322863 -182092379 + L1MC3 LINE L1 6808 7026 -759 194 270 0 32 chr6 322904 322967 -182092275 + L2 LINE L2 3233 3293 -20 2200 254 89 7 chr6 324327 325025 -182090217 + L1MC4a LINE L1 6747 7501 -307 2484 82 0 22 chr6 325118 325434 -182089808 + AluSc SINE Alu 1 309 0 3640 171 56 8 chr6 325803 326540 -182088702 + L1MA8 LINE L1 5514 6285 -6 1846 111 53 4 chr6 327424 327686 -182087556 + AluSg SINE Alu 34 308 -2 468 301 127 9 chr6 328040 328253 -182086989 - L1ME4a LINE L1 -196 5925 5688 208 351 35 9 chr6 328379 328493 -182086749 - L2 LINE L2 0 3313 3197 635 281 22 17 chr6 334185 334416 -182080826 + HERV16 LTR ERVL 882 1113 -3883 786 127 19 38 chr6 335031 335189 -182080053 - MER53 DNA DNA -34 155 1 687 343 92 13 chr6 335295 335674 -182079568 + LTR16A LTR ERVL 17 425 -25 1737 239 73 14 chr6 335950 336468 -182078774 - MER44D DNA MER2_type -1 604 1 315 312 28 0 chr6 336720 336829 -182078413 + MLT1I LTR MaLR 124 235 -174 248 298 155 25 chr6 338370 338531 -182076711 - MIR SINE MIR -1 261 80 472 262 25 8 chr6 339710 339832 -182075410 + L2 LINE L2 3190 3313 0 1810 81 146 0 chr6 340343 340604 -182074638 - AluSx SINE Alu -13 299 1 22 0 0 0 chr6 341333 341355 -182073887 + GC_rich Low_complexity Low_complexity 1 22 0 201 188 47 16 chr6 341377 341441 -182073801 + (CCCCAG)n Simple_repeat Simple_repeat 1 66 0 21 0 0 0 chr6 342896 342917 -182072325 + GC_rich Low_complexity Low_complexity 1 21 0 21 36 0 0 chr6 342975 343003 -182072239 + GC_rich Low_complexity Low_complexity 1 28 0 224 293 12 49 chr6 343302 343466 -182071776 + CT-rich Low_complexity Low_complexity 1 158 0 1352 165 99 51 chr6 344003 344276 -182070966 + AluJo SINE Alu 7 292 -20 432 329 7 7 chr6 344925 345062 -182070180 - MER5A DNA MER1_type -9 180 44 291 297 145 22 chr6 347903 348041 -182067201 + MIR3 SINE MIR 26 180 -28 24 53 0 0 chr6 348925 348963 -182066279 + AT_rich Low_complexity Low_complexity 1 38 0 539 245 111 67 chr6 350020 350235 -182065007 - L1ME4a LINE L1 -6 6115 5886 225 0 0 0 chr6 350235 350260 -182064982 + (CA)n Simple_repeat Simple_repeat 2 26 0 539 245 111 67 chr6 350260 350297 -182064945 - L1ME4a LINE L1 -235 5886 5852 350 305 32 7 chr6 350586 350740 -182064502 + MER103 DNA DNA 8 165 -1 2025 128 0 7 chr6 352191 352472 -182062770 + AluSx SINE Alu 1 279 -33 183 80 0 0 chr6 355202 355227 -182060015 + (TTAGGG)n Simple_repeat Simple_repeat 5 29 0 2454 90 0 0 chr6 355700 356001 -182059241 + AluSg SINE Alu 1 301 -9 23 0 0 0 chr6 356173 356196 -182059046 + AT_rich Low_complexity Low_complexity 1 23 0 1101 133 0 44 chr6 357057 357238 -182058004 - AluSg/x SINE Alu 0 312 140 206 225 0 0 chr6 358571 358611 -182056631 - L2 LINE L2 -4 3268 3229 22 35 0 0 chr6 358706 358735 -182056507 + AT_rich Low_complexity Low_complexity 1 29 0 261 193 174 73 chr6 361788 361897 -182053345 - MER34B LTR ERV1 -441 124 5 7918 187 52 43 chr6 361901 363901 -182051341 - MER34B-int LTR ERV1 0 6331 4314 2469 150 26 5 chr6 363901 364320 -182050922 + MSTA LTR MaLR 1 428 0 3142 141 33 2 chr6 364320 364839 -182050403 + MSTA-int LTR MaLR 1 535 -1116 345 190 40 30 chr6 364934 365034 -182050208 - MER34B-int LTR ERV1 -4937 1394 1294 353 237 36 82 chr6 365373 365567 -182049675 - MER34B-int LTR ERV1 -6078 253 69 446 273 99 37 chr6 365629 365951 -182049291 - MER34B LTR ERV1 -3 562 221 374 270 81 0 chr6 365991 366102 -182049140 - MER34B LTR ERV1 -441 124 5 198 50 75 0 chr6 367314 367354 -182047888 + GA-rich Low_complexity Low_complexity 5 47 0 254 351 114 8 chr6 367503 367634 -182047608 + L2 LINE L2 3100 3244 -28 278 272 198 46 chr6 367691 368015 -182047227 + L1ME4a LINE L1 5744 6116 -5 3737 155 22 10 chr6 369078 369770 -182045472 - L1MB3 LINE L1 -1 6182 5483 358 331 25 13 chr6 369945 370102 -182045140 - MIR SINE MIR -102 160 2 352 299 80 7 chr6 370351 370488 -182044754 - MIR SINE MIR -45 217 71 324 274 202 0 chr6 370546 370670 -182044572 + MIR SINE MIR 106 254 -8 1159 199 50 66 chr6 370675 371037 -182044205 - MLT1A2 LTR MaLR 0 374 19 28 29 0 0 chr6 371161 371196 -182044046 + AT_rich Low_complexity Low_complexity 1 35 0 2105 145 0 0 chr6 371295 371585 -182043657 - AluSx SINE Alu -22 290 1 22 35 0 0 chr6 371680 371709 -182043533 + AT_rich Low_complexity Low_complexity 1 29 0 243 0 0 0 chr6 372460 372487 -182042755 + (T)n Simple_repeat Simple_repeat 1 27 0 7894 146 98 28 chr6 374151 375738 -182039504 - pTR5 LTR ERV1 0 2438 741 963 236 106 7 chr6 375987 376271 -182038971 - MER63 DNA MER1_type -74 987 676 247 328 74 16 chr6 378246 378368 -182036874 - L3 LINE CR1 -467 1110 982 702 223 37 115 chr6 379205 379561 -182035681 - MER33 DNA MER1_type -6 318 1 203 331 70 21 chr6 379578 379720 -182035522 + MIR SINE MIR 43 191 -71 462 178 0 40 chr6 380026 380127 -182035115 + L1MC2 LINE L1 6248 6344 0 480 241 14 148 chr6 380132 380348 -182034894 - MER91B DNA MER1_type -2 188 2 1085 143 26 0 chr6 381455 381644 -182033598 - L1PA16 LINE L1 -9 6157 5964 1223 231 21 37 chr6 381876 382391 -182032851 + L1ME1 LINE L1 5327 5997 -169 1994 126 7 37 chr6 382504 382825 -182032417 + AluSx SINE Alu 1 312 0 4190 142 80 40 chr6 383758 385076 -182030166 - pTR5 LTR ERV1 0 2438 743 232 241 215 0 chr6 386227 386306 -182028936 + MARNA DNA Mariner 295 390 -196 2714 178 21 55 chr6 386408 387031 -182028211 - L1MB3 LINE L1 -20 6163 5562 483 261 112 2 chr6 387573 387740 -182027502 - MIR SINE MIR -51 157 17 221 215 0 13 chr6 389252 389331 -182025911 + CT-rich Low_complexity Low_complexity 2 79 0 * 601 151 30 0 chr6 389312 389478 -182025764 + (CATCC)n Simple_repeat Simple_repeat 2 172 0 475 158 39 0 chr6 389511 389638 -182025604 + (CATCC)n Simple_repeat Simple_repeat 4 135 0 812 114 25 0 chr6 389665 389823 -182025419 + (CATCC)n Simple_repeat Simple_repeat 5 166 0 461 154 9 0 chr6 389839 389949 -182025293 + (CATCC)n Simple_repeat Simple_repeat 3 113 0 267 315 23 39 chr6 390083 390213 -182025029 + MLT1I LTR MaLR 59 186 -223 2173 109 3 3 chr6 391703 392005 -182023237 - AluSx SINE Alu -10 302 1 1419 130 0 0 chr6 393298 393523 -182021719 + AluSg/x SINE Alu 91 315 0 218 302 190 9 chr6 393656 393772 -182021470 + MIR SINE MIR 59 195 -67 1536 191 34 49 chr6 397188 397244 -182017998 + MLT1B LTR MaLR 1 56 -334 2109 121 119 16 chr6 397244 397631 -182017611 + MSTC LTR MaLR 1 427 -1 1536 191 34 49 chr6 397631 397962 -182017280 + MLT1B LTR MaLR 56 382 -8 195 250 96 0 chr6 397999 398051 -182017191 - MIR3 SINE MIR -34 174 118 309 284 11 11 chr6 398442 398537 -182016705 - L2 LINE L2 -769 2545 2451 5451 128 25 22 chr6 398785 399974 -182015268 + pTR5 LTR ERV1 743 2088 -350 439 226 29 80 chr6 400442 400579 -182014663 + pTR5 LTR ERV1 264 393 -2045 265 284 196 0 chr6 401351 401453 -182013789 + MIR SINE MIR 87 208 -54 3837 235 69 21 chr6 402793 404052 -182011190 - L1MCc LINE L1 -2225 4716 3397 1736 144 37 3 chr6 404053 404352 -182010890 - MER6 DNA MER2_type 0 865 557 2273 177 55 39 chr6 404543 404728 -182010514 - MER6 DNA MER2_type -306 559 378 2329 86 7 7 chr6 404728 405032 -182010210 - AluSc SINE Alu -1 308 5 2273 177 55 39 chr6 405032 405338 -182009904 - MER6 DNA MER2_type -487 378 60 6704 166 18 3 chr6 405364 406508 -182008734 - MSTA-int LTR MaLR -490 1161 1 2522 148 27 0 chr6 406508 406919 -182008323 - MSTA LTR MaLR -2 426 5 341 248 105 30 chr6 406919 407052 -182008190 - L1MCc LINE L1 -4383 2739 2597 6343 88 33 9 chr6 407044 408143 -182007099 - L1PA8 LINE L1 -4 6168 5061 334 280 72 61 chr6 408148 408412 -182006830 - L1MCc LINE L1 -4559 2563 2297 352 296 37 0 chr6 408417 408525 -182006717 - Tigger7 DNA MER2_type -6 2481 2370 668 156 88 47 chr6 408598 408627 -182006615 - Tigger7 DNA MER2_type -79 2408 2382 1146 206 102 93 chr6 408627 409088 -182006154 - MER4C LTR ERV1 0 465 1 668 156 88 47 chr6 409088 409250 -182005992 - Tigger7 DNA MER2_type -105 2382 2209 696 218 8 0 chr6 409255 409388 -182005854 - Tigger7 DNA MER2_type -563 170 37 1862 243 117 44 chr6 409456 409530 -182005712 - L1MCc LINE L1 -4887 1536 1469 217 49 0 49 chr6 409530 409571 -182005671 + (TG)n Simple_repeat Simple_repeat 2 40 0 1862 243 117 44 chr6 409571 410601 -182004641 - L1MCc LINE L1 -4954 1469 814 4262 143 36 14 chr6 410679 411451 -182003791 - L1MA9 LINE L1 -3 6309 5521 451 354 48 9 chr6 411500 411729 -182003513 - L3 LINE CR1 -100 1477 1240 182 318 100 0 chr6 411735 411845 -182003397 - L2 LINE L2 -3 3310 3190 331 244 52 44 chr6 413609 413744 -182001498 + L1ME4a LINE L1 5955 6090 -31 2255 114 0 6 chr6 413957 414272 -182000970 - AluSq SINE Alu 0 313 1 2244 65 14 0 chr6 416457 416732 -181998510 - AluSx SINE Alu -11 301 23 594 194 118 12 chr6 417389 417559 -181997683 + L1MD3 LINE L1 7798 7985 -10 703 88 51 8 chr6 419745 419986 -181995256 + (TA)n Simple_repeat Simple_repeat 1 251 0 2387 84 0 3 chr6 422659 422955 -181992287 + AluSc SINE Alu 1 295 -14 481 126 0 99 chr6 423892 424003 -181991239 + L1MA3 LINE L1 6204 6303 -2 256 339 39 23 chr6 425165 425295 -181989947 - L2 LINE L2 0 3272 3141 200 267 22 56 chr6 425824 425914 -181989328 + MIR SINE MIR 65 151 -111 267 254 48 120 chr6 426046 426255 -181988987 + L2 LINE L2 3073 3266 -6 207 206 0 0 chr6 426264 426298 -181988944 + L2 LINE L2 3168 3201 -71 1533 265 167 39 chr6 426495 427370 -181987872 + L1ME2 LINE L1 100 1086 -4984 1080 247 44 16 chr6 427364 427680 -181987562 + L1ME2 LINE L1 5285 5609 -489 * 2551 40 3 3 chr6 427770 428070 -181987172 + AluY SINE Alu 1 300 -11 1236 175 4 43 chr6 428076 428310 -181986932 + AluJb SINE Alu 71 295 -17 1342 236 89 14 chr6 428310 428746 -181986496 + L1ME2 LINE L1 5630 6098 0 3432 168 46 27 chr6 430260 430993 -181984249 - L1MB8 LINE L1 0 6178 5432 1409 223 113 9 chr6 430993 431543 -181983699 - L1MB8 LINE L1 -940 5206 4574 849 58 53 0 chr6 432811 432982 -181982260 + (TA)n Simple_repeat Simple_repeat 1 180 0 909 51 28 22 chr6 432999 433177 -181982065 + (TA)n Simple_repeat Simple_repeat 2 180 0 267 150 0 0 chr6 433201 433261 -181981981 + (TA)n Simple_repeat Simple_repeat 2 61 0 410 323 56 0 chr6 433735 433896 -181981346 - MIR SINE MIR -75 187 18 387 0 0 0 chr6 434813 434856 -181980386 + (TG)n Simple_repeat Simple_repeat 2 44 0 272 235 13 134 chr6 437483 437632 -181977610 + L1ME LINE L1 13 143 -5927 353 281 113 45 chr6 439607 439828 -181975414 - MIR SINE MIR -14 248 13 21 57 0 0 chr6 440667 440702 -181974540 + AT_rich Low_complexity Low_complexity 1 35 0 500 183 99 47 chr6 441338 441529 -181973713 + L1ME LINE L1 762 962 -5108 * 13058 29 9 2 chr6 441525 443103 -181972139 + L1P LINE L1 2567 4156 -1990 2755 248 72 46 chr6 443097 444874 -181970368 + L1ME LINE L1 729 2552 -3528 * 1399 216 65 30 chr6 444880 445339 -181969903 + L1ME LINE L1 2660 3134 -2946 1809 142 110 23 chr6 446657 446967 -181968275 + MER1B DNA MER1_type 1 337 0 2004 146 0 0 chr6 448340 448620 -181966622 - AluSx SINE Alu -32 280 1 2252 109 0 3 chr6 449803 450106 -181965136 + AluSq SINE Alu 1 302 -11 786 107 13 3 chr6 450283 450404 -181964838 + MSTA LTR MaLR 319 428 0 3300 141 33 2 chr6 450404 450923 -181964319 + MSTA-int LTR MaLR 1 535 -1116 371 190 40 30 chr6 451018 451118 -181964124 - MER34B-int LTR ERV1 -4937 1394 1294 390 216 36 82 chr6 451457 451651 -181963591 - MER34B-int LTR ERV1 -6078 253 69 474 258 106 43 chr6 451713 452035 -181963207 - MER34B LTR ERV1 -3 562 221 392 270 81 0 chr6 452075 452186 -181963056 - MER34B LTR ERV1 -441 124 5 198 50 75 0 chr6 453398 453438 -181961804 + GA-rich Low_complexity Low_complexity 5 47 0 251 351 114 8 chr6 453587 453718 -181961524 + L2 LINE L2 3100 3244 -28 300 261 203 51 chr6 453775 454070 -181961172 + L1ME4a LINE L1 5744 6083 -38 198 65 32 65 chr6 455042 455104 -181960138 + (TCTCC)n Simple_repeat Simple_repeat 1 60 0 * 823 75 43 12 chr6 455101 455262 -181959980 + (TCTCTG)n Simple_repeat Simple_repeat 3 168 0 402 38 53 61 chr6 455236 455367 -181959875 + (TCTCC)n Simple_repeat Simple_repeat 2 131 0 * 3048 216 66 7 chr6 455524 455801 -181959441 - MER44D DNA MER2_type -1890 597 338 1645 178 17 0 chr6 455801 456099 -181959143 - AluJb SINE Alu -8 304 2 3048 216 66 7 chr6 456099 456506 -181958736 - MER44D DNA MER2_type -2149 338 1 2125 118 7 0 chr6 457993 458297 -181956945 - AluSx SINE Alu -6 306 1 197 275 22 33 chr6 459140 459231 -181956011 + L2 LINE L2 2135 2224 -1090 513 259 107 10 chr6 459723 459928 -181955314 + MIR SINE MIR 9 233 -29 595 200 14 48 chr6 460848 460993 -181954249 - MER4C LTR ERV1 -63 402 263 1253 180 74 77 chr6 461083 461433 -181953809 - MER4A LTR ERV1 -315 349 1 499 258 144 25 chr6 461435 461761 -181953481 - L1M4 LINE L1 -2931 3215 2851 812 153 24 0 chr6 461761 461885 -181953357 + FLAM_C SINE Alu 1 127 -16 250 250 99 128 chr6 461885 462263 -181952979 - L1M4 LINE L1 -3282 2864 2511 2049 110 7 0 chr6 462263 462554 -181952688 - AluSq SINE Alu -20 293 1 250 250 99 128 chr6 462554 462814 -181952428 - L1M4 LINE L1 -3635 2511 2245 301 224 58 24 chr6 463091 463509 -181951733 - L1MD2 LINE L1 0 7808 6165 2092 110 0 0 chr6 464100 464391 -181950851 + AluSg SINE Alu 1 291 -19 467 292 150 36 chr6 564618 565129 -181850113 - L2 LINE L2 0 3313 1016 335 307 63 8 chr6 566065 566192 -181849050 + L3 LINE CR1 1444 1577 0 233 275 50 50 chr6 566266 566346 -181848896 + L2 LINE L2 3144 3223 -49 4187 169 65 29 chr6 566367 567161 -181848081 - MER6 DNA MER2_type -2 863 36 2070 102 39 3 chr6 567161 567444 -181847798 + AluSx SINE Alu 3 295 -17 4187 169 65 29 chr6 567444 567482 -181847760 - MER6 DNA MER2_type -829 36 1 303 143 20 0 chr6 567546 567595 -181847647 - Tigger5 DNA MER2_type -15 2308 2259 * 1251 226 38 7 chr6 567592 567880 -181847362 - Tigger5 DNA MER2_type -2026 297 1 360 267 102 32 chr6 568914 569101 -181846141 + MLT1J2 LTR MaLR 251 450 0 242 29 29 0 chr6 569666 569701 -181845541 + (CAGA)n Simple_repeat Simple_repeat 2 37 0 392 183 0 0 chr6 569839 569910 -181845332 - L1MB8 LINE L1 -1 6177 6107 648 191 27 58 chr6 570036 570224 -181845018 - L1MB8 LINE L1 -21 6157 5976 3376 205 30 6 chr6 570340 571228 -181844014 - L1MB8 LINE L1 -186 5992 5086 2343 92 0 3 chr6 571273 571578 -181843664 - AluY SINE Alu -7 304 1 698 275 60 51 chr6 571664 571998 -181843244 + HAL1b LINE L1 209 545 -803 187 300 17 0 chr6 572102 572162 -181843080 + L2 LINE L2 3176 3236 -77 780 201 50 17 chr6 572278 572457 -181842785 - MER5A DNA MER1_type 0 189 5 542 211 191 27 chr6 572470 572617 -181842625 - MER5B DNA MER1_type -5 173 3 227 350 50 0 chr6 572715 572815 -181842427 + L2 LINE L2 3207 3311 -2 512 316 102 24 chr6 573194 573529 -181841713 + L2 LINE L2 1843 2203 -1111 210 306 241 20 chr6 575534 575733 -181839509 + L3 LINE CR1 356 598 -979 316 341 98 43 chr6 575742 576047 -181839195 + L3 LINE CR1 709 1030 -547 10028 115 9 2 chr6 576550 576858 -181838384 + L1PA10 LINE L1 3956 4260 -1908 2009 154 3 3 chr6 576858 577169 -181838073 - AluSx SINE Alu -1 311 1 10028 115 9 2 chr6 577169 579067 -181836175 + L1PA10 LINE L1 4260 6166 -2 563 125 10 0 chr6 579444 579548 -181835694 + (GA)n Simple_repeat Simple_repeat 1 105 0 391 275 17 0 chr6 579572 579692 -181835550 - L2 LINE L2 0 3313 3192 198 245 51 82 chr6 579800 579898 -181835344 - MIR SINE MIR -63 199 105 23 0 0 0 chr6 580062 580085 -181835157 + AT_rich Low_complexity Low_complexity 1 23 0 2800 103 0 20 chr6 580085 580475 -181834767 - L1PB1 LINE L1 -1 6150 5769 233 267 0 11 chr6 580495 580585 -181834657 - L1MC4 LINE L1 -1340 6702 6614 290 140 35 0 chr6 580585 580642 -181834600 + (TATG)n Simple_repeat Simple_repeat 3 61 0 5060 172 5 5 chr6 580642 582172 -181833070 - L1P5 LINE L1 -360 5791 4262 618 222 12 8 chr6 582270 582520 -181832722 + GA-rich Low_complexity Low_complexity 1 251 0 206 150 0 25 chr6 582631 582671 -181832571 + (CAAG)n Simple_repeat Simple_repeat 1 39 0 * 314 281 0 12 chr6 582649 582731 -181832511 + GA-rich Low_complexity Low_complexity 3 83 0 863 261 114 19 chr6 586005 586330 -181828912 - MLT1J LTR MaLR -131 380 25 2199 100 0 34 chr6 586330 586650 -181828592 + AluSx SINE Alu 1 309 -3 699 256 125 38 chr6 587123 587428 -181827814 + LTR16C LTR ERVL 144 480 -11 1647 201 175 24 chr6 587428 587880 -181827362 - MLT2B1 LTR ERVL 0 520 1 699 256 125 38 chr6 587880 587894 -181827348 + LTR16C LTR ERVL 480 491 0 237 216 157 0 chr6 587958 588009 -181827233 + L2 LINE L2 3239 3297 -16 263 320 69 15 chr6 589442 589645 -181825597 - MLT1C LTR MaLR -7 460 247 1735 57 0 13 chr6 589646 589876 -181825366 - AluY SINE Alu -84 227 1 762 193 66 0 chr6 589895 590061 -181825181 - MLT1D-int LTR MaLR -1193 178 2 293 130 19 37 chr6 590062 590116 -181825126 - MLT2C1 LTR ERVL 0 520 468 1907 154 50 71 chr6 590195 590577 -181824665 + THE1C LTR MaLR 1 374 -1 1640 177 88 9 chr6 590632 590949 -181824293 - MLT2C1 LTR ERVL -48 349 8 2379 55 3 39 chr6 591290 591600 -181823642 - AluY SINE Alu -12 299 1 307 287 85 53 chr6 591636 591824 -181823418 - L1ME4a LINE L1 -2 6119 5926 238 299 43 104 chr6 593322 593553 -181821689 + L2 LINE L2 2695 2911 -403 1602 223 31 77 chr6 593554 594075 -181821167 - MLT1D LTR MaLR 0 505 9 196 229 0 100 chr6 594163 594233 -181821009 + L2 LINE L2 3158 3220 -93 650 267 32 45 chr6 594674 594921 -181820321 - LTR33 LTR ERVL 0 521 278 711 285 38 29 chr6 594968 595308 -181819934 + L1M4 LINE L1 3101 3443 -2703 299 232 14 0 chr6 596570 596639 -181818603 - LTR33 LTR ERVL -26 495 426 310 42 42 0 chr6 596720 596768 -181818474 + (TAGA)n Simple_repeat Simple_repeat 4 53 0 228 176 0 0 chr6 596991 597042 -181818200 - LTR33 LTR ERVL -470 51 1 2108 128 0 0 chr6 597688 597995 -181817247 + AluSq SINE Alu 1 307 0 261 114 63 13 chr6 598316 598395 -181816847 + CT-rich Low_complexity Low_complexity 2 84 0 822 295 93 42 chr6 599276 599813 -181815429 + L1M4 LINE L1 3863 4450 -1696 2400 72 7 0 chr6 599813 600105 -181815137 + AluSp SINE Alu 1 294 -19 822 295 93 42 chr6 600105 600310 -181814932 + L1M4 LINE L1 4450 4643 -1503 229 191 95 16 chr6 600321 600384 -181814858 - LTR13 LTR ERVK -698 309 242 761 225 34 49 chr6 600442 600709 -181814533 + LTR13 LTR ERVK 1 263 -744 22 0 0 0 chr6 602808 602830 -181812412 + AT_rich Low_complexity Low_complexity 1 22 0 229 318 120 54 chr6 603923 604165 -181811077 - L2 LINE L2 -398 2916 2659 201 121 0 0 chr6 604419 604452 -181810790 + (GA)n Simple_repeat Simple_repeat 2 34 0 194 150 25 0 chr6 604452 604492 -181810750 + (TA)n Simple_repeat Simple_repeat 1 41 0 1234 116 32 26 chr6 605123 605312 -181809930 - L1PA15 LINE L1 -7 6158 5969 2235 228 82 14 chr6 605449 606036 -181809206 - L1ME3 LINE L1 0 6162 5536 934 153 23 6 chr6 606371 606547 -181808695 - L1MA4 LINE L1 -4 6296 6118 1209 215 27 5 chr6 606818 607037 -181808205 - MER58A DNA MER1_type 0 224 1 308 336 55 48 chr6 607124 607270 -181807972 - L1ME2 LINE L1 -287 5877 5731 417 246 84 14 chr6 607270 607412 -181807830 + MIR SINE MIR 111 262 0 652 306 52 29 chr6 607609 608053 -181807189 + L1ME3 LINE L1 4590 5043 -1103 12537 126 13 36 chr6 608166 610265 -181804977 + Tigger1 DNA MER2_type 1 2018 -400 1913 103 3 94 chr6 610265 610584 -181804658 + AluSq SINE Alu 1 290 -23 12537 126 13 36 chr6 610584 610785 -181804457 + Tigger1 DNA MER2_type 2018 2222 -196 260 174 31 10 chr6 610791 610889 -181804353 + (TA)n Simple_repeat Simple_repeat 1 100 0 881 136 65 0 chr6 610894 611048 -181804194 + Tigger1 DNA MER2_type 2255 2418 0 950 295 102 31 chr6 611069 611263 -181803979 + L1ME3 LINE L1 5258 5437 -725 2203 132 3 0 chr6 611263 611751 -181803491 + AluSq SINE Alu 1 313 0 950 295 102 31 chr6 611751 612142 -181803100 + L1ME3 LINE L1 5437 5885 -277 35 41 0 0 chr6 612389 612438 -181802804 + AT_rich Low_complexity Low_complexity 1 49 0 2440 48 3 0 chr6 614085 614377 -181800865 + AluY SINE Alu 1 293 -18 925 138 0 0 chr6 614477 614607 -181800635 - AluSp SINE Alu -183 130 1 2075 96 15 4 chr6 614929 615201 -181800041 + AluSq SINE Alu 27 301 -12 345 273 50 22 chr6 615201 615340 -181799902 + MARNA DNA Mariner 411 553 -33 520 304 42 51 chr6 615600 616051 -181799191 + L2 LINE L2 2867 3313 0 555 260 19 7 chr6 617594 617748 -181797494 - L2 LINE L2 -5 3308 3153 470 336 38 19 chr6 617841 618052 -181797190 + MIR SINE MIR 22 236 -26 234 0 0 0 chr6 620673 620699 -181794543 + (TC)n Simple_repeat Simple_repeat 1 26 0 219 250 0 0 chr6 623109 623177 -181792065 + GA-rich Low_complexity Low_complexity 5 72 0 1501 172 41 28 chr6 623247 623538 -181791704 + AluJo SINE Alu 3 297 -15 989 145 6 52 chr6 623614 623786 -181791456 - AluJb SINE Alu -17 295 132 5713 139 3 0 chr6 623786 624899 -181790343 - L1PA14 LINE L1 0 6161 5047 3104 168 2 0 chr6 624902 625450 -181789792 + L1P LINE L1 3988 4536 -1610 366 284 31 89 chr6 625774 626066 -181789176 - LTR16C LTR ERVL -109 382 108 2616 68 0 0 chr6 626367 626676 -181788566 + AluY SINE Alu 1 309 -2 664 213 27 19 chr6 627278 627457 -181787785 + MER5A DNA MER1_type 3 189 0 280 274 168 58 chr6 628969 629279 -181785963 + L2 LINE L2 1653 1996 -1318 1322 166 200 10 chr6 629298 629476 -181785766 + MER7A DNA MER2_type 4 147 -2891 1489 102 56 0 chr6 629476 629691 -181785551 + MER30 DNA MER1_type 2 228 -2 1322 166 200 10 chr6 629691 629802 -181785440 + MER7A DNA MER2_type 147 346 0 211 328 74 0 chr6 630037 630159 -181785083 + L2 LINE L2 2680 2810 -504 241 291 134 34 chr6 630229 630497 -181784745 + L2 LINE L2 2935 3229 -84 1241 185 161 24 chr6 630982 631323 -181783919 - MLT1B LTR MaLR 0 390 3 2429 88 0 3 chr6 631352 631658 -181783584 + AluSq SINE Alu 1 305 -8 251 290 107 0 chr6 632210 632341 -181782901 + L2 LINE L2 1976 2120 -1194 526 299 57 10 chr6 632377 632571 -181782671 + L2 LINE L2 2238 2440 -874 550 254 109 16 chr6 632584 632777 -181782465 - MIR SINE MIR 0 262 52 318 328 154 17 chr6 632860 633275 -181781967 + L2 LINE L2 2474 2945 -369 508 314 42 29 chr6 633334 633719 -181781523 + L2 LINE L2 2924 3313 0 343 246 69 23 chr6 635755 635885 -181779357 - L2 LINE L2 0 3272 3137 260 250 0 0 chr6 636764 636828 -181778414 - MLT1I LTR MaLR 0 409 346 339 231 13 0 chr6 637217 637295 -181777947 + MIR3 SINE MIR 113 191 -17 5178 20 3 3 chr6 637743 638334 -181776908 + L1PA3 LINE L1 5565 6155 0 22 35 0 0 chr6 640249 640278 -181774964 + AT_rich Low_complexity Low_complexity 1 29 0 219 259 0 0 chr6 643331 643416 -181771826 + (TG)n Simple_repeat Simple_repeat 1 85 0 192 253 0 0 chr6 643450 643525 -181771717 + (TATG)n Simple_repeat Simple_repeat 4 78 0 426 318 17 6 chr6 643527 643700 -181771542 + (TG)n Simple_repeat Simple_repeat 1 175 0 25 51 0 0 chr6 644520 644559 -181770683 + AT_rich Low_complexity Low_complexity 1 39 0 22 0 0 0 chr6 644929 644951 -181770291 + AT_rich Low_complexity Low_complexity 1 22 0 2421 97 0 0 chr6 647527 647838 -181767404 + AluY SINE Alu 1 311 0 284 339 46 9 chr6 647862 647971 -181767271 - MIR3 SINE MIR -9 199 87 308 205 212 40 chr6 650032 650183 -181765059 - L2 LINE L2 -11 3302 3126 1395 165 4 16 chr6 651213 651455 -181763787 + AluJo SINE Alu 54 292 -20 464 244 289 29 chr6 651519 651834 -181763408 - LTR16C LTR ERVL -10 481 85 376 321 54 29 chr6 652016 652296 -181762946 - ERVL LTR ERVL -384 5380 5094 252 346 48 18 chr6 652539 652767 -181762475 - ERVL LTR ERVL -1120 4644 4410 2258 98 7 7 chr6 653522 653828 -181761414 - AluSc SINE Alu -3 306 1 467 219 89 0 chr6 653859 653982 -181761260 + MER94 DNA DNA 1 134 0 1067 288 151 12 chr6 654058 654742 -181760500 + L2 LINE L2 1015 1793 -1521 523 138 92 28 chr6 654745 654854 -181760388 - MER53 DNA DNA -2 187 72 2867 161 205 20 chr6 654865 655474 -181759768 - pTR5 LTR ERV1 0 2438 1717 2206 144 108 2 chr6 657802 658199 -181757043 - Tigger2 DNA MER2_type 0 2718 2280 415 174 14 0 chr6 658196 658265 -181756977 + MER8 DNA MER2_type 170 239 0 * 308 161 54 0 chr6 658504 658560 -181756682 + L2 LINE L2 3214 3272 0 1904 128 24 0 chr6 658815 659104 -181756138 - AluYa5 SINE Alu -15 296 1 1391 226 7 3 chr6 659175 659458 -181755784 - AluJo SINE Alu -28 284 1 183 217 0 43 chr6 660416 660462 -181754780 + MIR SINE MIR 204 247 -15 368 368 162 25 chr6 660974 661821 -181753421 + L2 LINE L2 959 1921 -1393 249 269 103 13 chr6 661819 661897 -181753345 + L2 LINE L2 3229 3313 0 * 1996 114 10 33 chr6 662058 662364 -181752878 + AluJo SINE Alu 10 308 -4 2193 80 35 7 chr6 663271 663557 -181751685 + AluSg SINE Alu 1 294 -16 414 51 0 0 chr6 663604 663663 -181751579 + AluSc SINE Alu 245 303 -6 225 0 0 0 chr6 664380 664405 -181750837 + (TG)n Simple_repeat Simple_repeat 2 26 0 211 338 0 0 chr6 665303 665374 -181749868 + C-rich Low_complexity Low_complexity 6 76 0 488 174 31 39 chr6 666678 666869 -181748373 - L1MB7 LINE L1 -66 6114 5889 2428 76 0 3 chr6 667033 667337 -181747905 + AluY SINE Alu 1 303 -8 22 56 0 0 chr6 667982 668018 -181747224 + AT_rich Low_complexity Low_complexity 1 36 0 419 246 123 35 chr6 669299 669502 -181745740 + L1MC5 LINE L1 7711 7931 -30 302 253 53 0 chr6 669528 669603 -181745639 + MIR SINE MIR 34 112 -150 358 330 89 65 chr6 669769 670296 -181744946 - L1ME LINE L1 -315 5806 5267 26 50 0 0 chr6 670510 670550 -181744692 + AT_rich Low_complexity Low_complexity 1 40 0 276 255 128 10 chr6 671172 671274 -181743968 - MIR SINE MIR -72 190 77 279 0 0 0 chr6 671567 671598 -181743644 + (TG)n Simple_repeat Simple_repeat 1 31 0 282 281 305 0 chr6 671598 671762 -181743480 + MIR SINE MIR 13 226 -36 1723 98 0 0 chr6 671766 671981 -181743261 + AluSg SINE Alu 1 215 -95 22 35 0 0 chr6 672105 672134 -181743108 + AT_rich Low_complexity Low_complexity 1 29 0 1410 171 209 31 chr6 674332 674776 -181740466 - MER74A LTR ERVL -2 556 34 288 0 0 0 chr6 674788 674820 -181740422 + (CAAA)n Simple_repeat Simple_repeat 3 34 0 1089 135 17 97 chr6 675534 675771 -181739471 + Tigger1 DNA MER2_type 1 218 -2200 2064 112 36 7 chr6 676251 676555 -181738687 - AluSq SINE Alu 0 313 1 641 196 21 21 chr6 676688 676831 -181738411 + L1MCa LINE L1 12 154 -6272 * 891 211 11 6 chr6 676827 677007 -181738235 + L1MCa LINE L1 79 259 -6167 * 3146 190 77 31 chr6 677005 677603 -181737639 + L1MCa LINE L1 776 1345 -5081 194 0 39 0 chr6 677603 677629 -181737613 + (TAAA)n Simple_repeat Simple_repeat 2 28 0 3146 190 77 31 chr6 677629 678030 -181737212 + L1MCa LINE L1 1345 1916 -4510 1751 159 152 42 chr6 678127 678155 -181737087 + Charlie1 DNA MER1_type 578 602 -2159 1847 134 78 0 chr6 678155 678458 -181736784 - AluSx SINE Alu 0 312 1 909 165 0 0 chr6 678466 678599 -181736643 - FLAM_A SINE Alu 0 133 1 1751 159 152 42 chr6 678599 678970 -181736272 + Charlie1 DNA MER1_type 608 1031 -1730 24 0 0 0 chr6 679028 679052 -181736190 + AT_rich Low_complexity Low_complexity 1 24 0 906 201 50 30 chr6 680559 680858 -181734384 - MER2 DNA MER2_type 0 345 6 1149 205 115 0 chr6 681294 681572 -181733670 + L1MCa LINE L1 1302 1611 -4815 2936 164 32 26 chr6 681574 681612 -181733630 - MLT2B3 LTR ERVL 0 554 518 447 19 0 0 chr6 681612 681664 -181733578 + (TGGA)n Simple_repeat Simple_repeat 4 55 0 2936 164 32 26 chr6 681664 682161 -181733081 - MLT2B3 LTR ERVL -36 518 16 2145 164 118 27 chr6 682170 682694 -181732548 + L1MCa LINE L1 1713 2284 -4142 1609 140 43 37 chr6 682694 682994 -181732248 + L1MC2 LINE L1 6025 6326 -18 759 298 58 0 chr6 683374 683582 -181731660 - MER58A DNA MER1_type -3 221 2 12413 202 81 31 chr6 683589 685314 -181729928 - L1PB1 LINE L1 -2 6865 5227 189 0 0 0 chr6 685314 685335 -181729907 + (TTTTA)n Simple_repeat Simple_repeat 2 22 0 12413 202 81 31 chr6 685335 686521 -181728721 - L1PB1 LINE L1 -1640 5227 4101 881 118 0 0 chr6 686521 686640 -181728602 - AluSg/x SINE Alu -15 297 179 12413 202 81 31 chr6 686640 690124 -181725118 - L1PB1 LINE L1 -2766 4101 51 321 182 171 0 chr6 690127 690215 -181725027 + MER106B DNA MER1_type 957 1059 0 236 331 21 14 chr6 690241 690389 -181724853 + L1P LINE L1 4077 4232 -1914 2375 98 0 0 chr6 690565 690860 -181724382 + AluSq SINE Alu 1 295 -18 260 27 27 0 chr6 690860 690897 -181724345 + (TA)n Simple_repeat Simple_repeat 2 39 0 449 290 60 33 chr6 690936 691119 -181724123 - L2 LINE L2 0 3313 3126 581 245 153 38 chr6 691808 692155 -181723087 + L1ME4a LINE L1 5533 5919 -202 14926 132 27 17 chr6 694030 694696 -181720546 - Tigger1 DNA MER2_type -1 2417 1759 2140 136 0 13 chr6 694696 695012 -181720230 - AluJo SINE Alu 0 312 1 14926 132 27 17 chr6 695012 696732 -181718510 - Tigger1 DNA MER2_type -659 1759 7 2381 91 0 0 chr6 697458 697754 -181717488 - AluSg SINE Alu -14 296 1 2035 140 3 0 chr6 697828 698158 -181717084 - AluSx SINE Alu 0 312 1 2393 75 0 16 chr6 698197 698502 -181716740 + AluY SINE Alu 1 300 -11 244 283 109 36 chr6 699178 699316 -181715926 - MIR3 SINE MIR -23 185 38 22 0 0 0 chr6 699413 699435 -181715807 + AT_rich Low_complexity Low_complexity 1 22 0 947 201 0 0 chr6 700341 700510 -181714732 + FAM SINE Alu 1 169 -6 1799 138 57 27 chr6 700517 700813 -181714429 + AluJo SINE Alu 1 305 -7 310 244 49 0 chr6 701339 701421 -181713821 - L2 LINE L2 -5 3308 3223 252 345 101 14 chr6 701996 702135 -181713107 + MIR3 SINE MIR 47 197 -11 323 244 2 0 chr6 703026 703118 -181712124 - L1MC4 LINE L1 0 8042 7681 765 227 74 29 chr6 703130 703372 -181711870 - L1MC4 LINE L1 -55 7987 7735 674 217 91 11 chr6 703373 703548 -181711694 + L1MC4 LINE L1 7392 7580 -462 1156 201 225 0 chr6 703556 703889 -181711353 - L1MC4 LINE L1 -1040 7002 6595 * 5909 222 167 31 chr6 703883 706503 -181708739 - L1M4 LINE L1 -778 5368 2392 278 274 49 20 chr6 706518 706620 -181708622 - L1MEc LINE L1 -4648 1748 1644 619 253 32 58 chr6 706689 707001 -181708241 - L1MEc LINE L1 -5090 1115 812 708 196 106 32 chr6 707011 707200 -181708042 - MER21B LTR ERV1 -1 862 660 555 245 77 77 chr6 707963 708249 -181706993 - MER21B LTR ERV1 -573 290 5 262 284 116 53 chr6 708267 708492 -181706750 - HAL1 LINE L1 -145 2362 2124 1862 153 24 66 chr6 708655 709035 -181706207 - MLT1B LTR MaLR -2 388 25 356 260 103 113 chr6 709098 709171 -181706071 - HAL1 LINE L1 -1591 916 844 3800 136 71 5 chr6 709171 709774 -181705468 + LTR48B LTR ERV1 1 643 -1 356 260 103 113 chr6 709774 710000 -181705242 - HAL1 LINE L1 -1663 844 620 2313 90 7 0 chr6 710578 710878 -181704364 - AluSg SINE Alu -7 303 2 340 354 31 10 chr6 710889 711105 -181704137 - MIR SINE MIR -13 249 3 2242 103 0 6 chr6 713438 713749 -181701493 - AluSc SINE Alu 0 309 1 31 68 0 0 chr6 714730 714789 -181700453 + AT_rich Low_complexity Low_complexity 1 59 0 1914 129 0 60 chr6 715146 715463 -181699779 + AluJb SINE Alu 2 299 -13 300 307 181 0 chr6 717171 717376 -181697866 + MIR SINE MIR 17 258 -4 22 0 0 0 chr6 717632 717654 -181697588 + AT_rich Low_complexity Low_complexity 1 22 0 180 219 0 0 chr6 717689 717730 -181697512 + (TATATG)n Simple_repeat Simple_repeat 2 42 0 2358 90 0 19 chr6 717960 718272 -181696970 - AluSg SINE Alu -4 306 1 570 287 123 0 chr6 721270 721465 -181693777 + MIR SINE MIR 34 252 -10 772 215 41 0 chr6 721710 721882 -181693360 - LTR37A LTR ERV1 0 426 248 195 42 0 0 chr6 722262 722286 -181692956 + (T)n Simple_repeat Simple_repeat 1 24 0 21 0 0 0 chr6 722521 722542 -181692700 + AT_rich Low_complexity Low_complexity 1 21 0 2315 88 0 3 chr6 722637 722931 -181692311 + AluSx SINE Alu 1 293 -19 204 40 0 0 chr6 723989 724014 -181691228 + (A)n Simple_repeat Simple_repeat 1 25 0 185 213 187 27 chr6 724934 725009 -181690233 + MIR SINE MIR 105 191 -71 384 258 273 10 chr6 725059 725257 -181689985 - MIR SINE MIR 0 262 13 275 314 34 25 chr6 727383 727501 -181687741 - MER117 DNA MER1_type -43 154 36 24 0 0 0 chr6 732529 732553 -181682689 + AT_rich Low_complexity Low_complexity 1 24 0 1236 105 17 6 chr6 732596 732800 -181682442 + AluSc SINE Alu 106 311 0 2690 23 0 0 chr6 732906 733207 -181682035 - AluY SINE Alu -9 302 2 379 287 43 28 chr6 733538 733771 -181681471 - L1MC5 LINE L1 -218 7824 7501 1329 112 0 0 chr6 733784 733962 -181681280 - AluSg/x SINE Alu -4 308 131 405 207 18 36 chr6 733983 734094 -181681148 - L1MC5 LINE L1 -483 7478 7370 336 111 0 0 chr6 734309 734363 -181680879 + (CA)n Simple_repeat Simple_repeat 2 55 0 21 57 0 0 chr6 734772 734807 -181680435 + AT_rich Low_complexity Low_complexity 1 35 0 1890 236 68 23 chr6 734930 735443 -181679799 - MER77 LTR ERV1 -10 595 60 205 50 25 25 chr6 735607 735647 -181679595 + (TTTA)n Simple_repeat Simple_repeat 1 40 0 1220 15 0 0 chr6 735648 735778 -181679464 - L1PA4 LINE L1 -13 6142 6013 201 74 0 0 chr6 736063 736090 -181679152 + (TTTC)n Simple_repeat Simple_repeat 2 28 0 598 225 191 0 chr6 737188 737361 -181677881 + MER58C DNA MER1_type 1 206 -9 1284 144 42 14 chr6 738839 739054 -181676188 - MER46A DNA MER2_type -15 221 1 749 148 6 42 chr6 741828 742000 -181673242 + MER3 DNA MER1_type 1 209 0 626 320 61 4 chr6 742047 742275 -181672967 - MIR SINE MIR -5 257 17 2839 240 97 9 chr6 742277 743069 -181672173 + Tigger6a DNA MER2_type 1 862 -221 3541 47 0 0 chr6 743102 743507 -181671735 - L1PA5 LINE L1 -2 6152 5748 4956 40 2 0 chr6 743507 744126 -181671116 + L1P LINE L1 2831 3450 -2696 885 219 59 0 chr6 744126 744345 -181670897 + Tigger6a DNA MER2_type 850 1081 -2 337 339 58 37 chr6 745387 745576 -181669666 + MIR SINE MIR 49 241 -21 278 342 57 25 chr6 745699 745857 -181669385 - L2 LINE L2 -1063 2251 2089 469 255 75 70 chr6 745868 746068 -181669174 + MER63A DNA MER1_type 1 201 -9 623 227 97 5 chr6 751162 751347 -181663895 - L1ME2 LINE L1 0 6164 5963 2283 84 0 24 chr6 752050 752348 -181662894 + AluSg SINE Alu 1 291 -19 471 298 54 0 chr6 752428 752596 -181662646 + MIR SINE MIR 76 252 -10 1715 181 11 0 chr6 752866 753153 -181662089 + AluJo SINE Alu 4 293 -19 229 311 37 30 chr6 753613 753748 -181661494 - MIR3 SINE MIR -6 202 67 2062 128 0 28 chr6 756465 756786 -181658456 - AluSx SINE Alu 0 312 1 180 261 22 0 chr6 757371 757417 -181657825 - L2 LINE L2 -25 3247 3201 406 316 153 54 chr6 757764 758847 -181656395 - L2 LINE L2 -22 3250 2028 21 0 0 0 chr6 759215 759236 -181656006 + AT_rich Low_complexity Low_complexity 1 21 0 302 229 60 131 chr6 759360 759398 -181655844 + MER5B DNA MER1_type 6 45 -133 2432 50 0 30 chr6 759398 759699 -181655543 - AluY SINE Alu -13 298 7 302 229 60 131 chr6 759699 759843 -181655399 + MER5B DNA MER1_type 45 175 -3 262 293 71 10 chr6 760036 760135 -181655107 - L2 LINE L2 -213 3059 2955 2080 107 7 24 chr6 760878 761176 -181654066 + AluSg SINE Alu 1 293 -17 699 209 68 80 chr6 761401 761727 -181653515 - L1MC5 LINE L1 -28 7933 7612 2429 71 0 0 chr6 761986 762281 -181652961 + AluY SINE Alu 1 295 -16 23 33 0 0 chr6 765427 765457 -181649785 + AT_rich Low_complexity Low_complexity 1 30 0 255 125 0 0 chr6 766762 766802 -181648440 + (TA)n Simple_repeat Simple_repeat 1 40 0 180 0 0 0 chr6 766886 766906 -181648336 + (CCCCCA)n Simple_repeat Simple_repeat 1 20 0 2148 113 3 10 chr6 768217 768518 -181646724 - AluSx SINE Alu -13 299 1 211 280 40 13 chr6 768735 768810 -181646432 - MIR3 SINE MIR 0 208 132 2209 130 0 0 chr6 769190 769490 -181645752 + AluSg SINE Alu 1 300 -10 21 95 0 0 chr6 770473 770536 -181644706 + AT_rich Low_complexity Low_complexity 1 63 0 521 264 39 19 chr6 771098 771253 -181643989 + L2 LINE L2 3156 3313 0 23 68 0 0 chr6 771336 771380 -181643862 + AT_rich Low_complexity Low_complexity 1 44 0 21 0 0 0 chr6 772503 772524 -181642718 + AT_rich Low_complexity Low_complexity 1 21 0 27 29 0 0 chr6 772925 772959 -181642283 + AT_rich Low_complexity Low_complexity 1 34 0 1726 92 78 163 chr6 773806 774107 -181641135 - MSTB LTR MaLR 0 426 176 1581 109 17 0 chr6 774107 774346 -181640896 - MER75B DNA T2_type 0 243 1 1726 92 78 163 chr6 774346 774503 -181640739 - MSTB LTR MaLR -250 176 7 218 263 105 94 chr6 774694 774865 -181640377 + L2 LINE L2 3136 3308 -5 628 313 86 48 chr6 775190 775749 -181639493 + L1MC4a LINE L1 5535 6114 -1694 58 60 0 0 chr6 775790 775890 -181639352 + AT_rich Low_complexity Low_complexity 1 100 0 394 243 189 0 chr6 777157 777268 -181637974 + MIR SINE MIR 64 195 -67 350 230 355 7 chr6 778764 778916 -181636326 + MIR SINE MIR 58 262 0 185 318 0 61 chr6 778926 778992 -181636250 + L2 LINE L2 3234 3295 -18 2519 62 0 0 chr6 779097 779402 -181635840 + AluY SINE Alu 1 305 -6 814 262 74 68 chr6 780925 781436 -181633806 - MLT2B1 LTR ERVL -6 514 1 382 283 23 28 chr6 781799 781976 -181633266 + (CATATA)n Simple_repeat Simple_repeat 4 179 0 33 0 0 0 chr6 782038 782071 -181633171 + AT_rich Low_complexity Low_complexity 1 33 0 250 324 0 0 chr6 782130 782241 -181633001 - L2 LINE L2 -254 3059 2949 635 302 215 6 chr6 782383 782876 -181632366 - L2 LINE L2 -608 2706 2111 226 315 240 0 chr6 783157 783303 -181631939 + L2 LINE L2 2603 2783 -531 21 0 0 0 chr6 783483 783504 -181631738 + AT_rich Low_complexity Low_complexity 1 21 0 22 0 0 0 chr6 783941 783963 -181631279 + AT_rich Low_complexity Low_complexity 1 22 0 30 59 0 0 chr6 784548 784599 -181630643 + AT_rich Low_complexity Low_complexity 1 51 0 200 273 0 0 chr6 785072 785127 -181630115 + CT-rich Low_complexity Low_complexity 3 57 0 318 243 111 62 chr6 785715 785958 -181629284 + L1ME4a LINE L1 5832 6086 -35 2277 83 14 0 chr6 787648 787938 -181627304 + AluSc SINE Alu 1 294 -15 243 221 26 39 chr6 788097 788174 -181627068 + MER8 DNA MER2_type 2 77 -162 28 86 0 0 chr6 788451 788521 -181626721 + AT_rich Low_complexity Low_complexity 1 70 0 2386 92 0 3 chr6 788522 788828 -181626414 + AluSq SINE Alu 1 305 -8 384 229 47 84 chr6 788944 789158 -181626084 + Charlie5 DNA MER1_type 2419 2624 0 2223 101 3 16 chr6 790692 791000 -181624242 - AluSx SINE Alu -8 304 1 273 299 133 88 chr6 791657 791883 -181623359 + L2 LINE L2 2849 3063 -250 2499 74 0 3 chr6 791883 792192 -181623050 - AluSc SINE Alu -1 308 1 273 299 133 88 chr6 792192 792387 -181622855 + L2 LINE L2 3063 3289 -24 2241 92 0 7 chr6 795190 795484 -181619758 + AluSg SINE Alu 1 292 -18 243 103 0 0 chr6 796113 796152 -181619090 + (CA)n Simple_repeat Simple_repeat 2 40 0 206 312 9 18 chr6 796153 796262 -181618980 + (TA)n Simple_repeat Simple_repeat 2 109 0 1913 146 3 0 chr6 796313 796601 -181618641 + AluSx SINE Alu 1 289 -23 476 306 135 5 chr6 796830 797052 -181618190 - L2 LINE L2 -886 2428 2178 1204 228 71 50 chr6 797103 797567 -181617675 - LTR42 LTR ERVL -20 475 2 211 263 165 45 chr6 802435 802568 -181612674 - MIR3 SINE MIR -56 152 4 2227 159 30 28 chr6 802601 803034 -181612208 - Tigger2a DNA MER2_type 0 434 1 316 235 29 73 chr6 803333 803469 -181611773 - L1ME4a LINE L1 0 6121 5992 411 251 102 21 chr6 803580 803815 -181611427 - L1ME4a LINE L1 -237 5884 5631 2925 3 0 0 chr6 804351 804664 -181610578 - AluYb8 SINE Alu -5 313 1 1455 172 74 16 chr6 805830 806308 -181608934 - L1MA7 LINE L1 -5 6295 5749 265 261 34 42 chr6 807459 807578 -181607664 - L1ME2 LINE L1 -227 5951 5834 449 283 135 74 chr6 807578 808576 -181606666 - L1MEd LINE L1 -2492 3637 2579 673 262 43 24 chr6 808610 808983 -181606259 - L1MEd LINE L1 -4882 1249 970 1096 121 0 0 chr6 809275 809424 -181605818 + AluSq/x SINE Alu 1 149 -164 369 176 0 0 chr6 810350 810418 -181604824 - Tigger5 DNA MER2_type 0 2323 2256 293 200 12 71 chr6 810414 810438 -181604804 + Tigger5 DNA MER2_type 2241 2265 -58 * 2245 103 3 0 chr6 810438 810738 -181604504 - AluSg1 SINE Alu -8 301 1 293 200 12 71 chr6 810738 810798 -181604444 + Tigger5 DNA MER2_type 2265 2320 -3 * 396 205 13 0 chr6 810798 810875 -181604367 - Tigger5 DNA MER2_type -2245 78 1 1373 236 110 6 chr6 811461 811952 -181603290 - L1ME2 LINE L1 0 6164 5623 610 244 146 18 chr6 812396 814139 -181601103 - L1ME2 LINE L1 -659 5507 3209 900 210 6 33 chr6 814157 814338 -181600904 - AluJo SINE Alu -24 288 113 461 223 103 29 chr6 814342 814584 -181600658 - L1ME2 LINE L1 -2945 3201 2942 436 329 48 18 chr6 814829 815057 -181600185 - HAL1b LINE L1 -756 592 358 297 68 0 0 chr6 815063 815107 -181600135 + (TC)n Simple_repeat Simple_repeat 1 44 0 297 323 60 39 chr6 815186 815418 -181599824 - HAL1 LINE L1 -1151 1356 1120 2027 143 20 64 chr6 816311 816703 -181598539 + THE1C LTR MaLR 1 375 0 22 0 0 0 chr6 817610 817632 -181597610 + AT_rich Low_complexity Low_complexity 1 22 0 187 338 0 27 chr6 818169 818243 -181596999 + L2 LINE L2 2687 2758 -556 231 218 36 91 chr6 818308 818418 -181596824 + L2 LINE L2 2642 2745 -569 1696 194 0 10 chr6 818472 818771 -181596471 + MER2 DNA MER2_type 42 337 -8 21 0 0 0 chr6 821529 821550 -181593692 + AT_rich Low_complexity Low_complexity 1 21 0 26 50 0 0 chr6 821674 821714 -181593528 + AT_rich Low_complexity Low_complexity 1 40 0 771 249 42 46 chr6 822509 822726 -181592516 - MIR SINE MIR -5 257 42 2478 78 3 0 chr6 822790 823097 -181592145 + AluSp SINE Alu 1 308 -5 343 293 44 79 chr6 823127 823356 -181591886 + L1ME2 LINE L1 5337 5557 -607 358 279 66 27 chr6 823417 823600 -181591642 + L1ME2 LINE L1 5618 5807 -314 24 53 0 0 chr6 823869 823907 -181591335 + AT_rich Low_complexity Low_complexity 1 38 0 264 314 95 7 chr6 823929 824066 -181591176 + L3 LINE CR1 327 475 -1102 418 259 53 35 chr6 824385 824555 -181590687 + L1ME LINE L1 138 310 -5895 300 253 62 41 chr6 824624 824770 -181590472 + L1ME LINE L1 1729 1877 -4519 744 315 27 10 chr6 824773 825065 -181590177 + L1ME LINE L1 3533 3829 -2386 505 94 10 83 chr6 825115 825244 -181589998 - L1PA8 LINE L1 0 6172 6082 664 183 0 0 chr6 825737 825841 -181589401 + FRAM SINE Alu 56 159 -17 1891 153 10 3 chr6 827702 828002 -181587240 + AluJb SINE Alu 1 302 -10 1276 199 101 136 chr6 831208 832239 -181583003 - L1MC5 LINE L1 -110 7851 6857 189 107 0 0 chr6 834278 834306 -181580936 + (GGGTG)n Simple_repeat Simple_repeat 5 32 0 206 192 0 39 chr6 834647 834699 -181580543 + CT-rich Low_complexity Low_complexity 2 51 0 264 267 89 30 chr6 835368 835503 -181579739 - MIR3 SINE MIR -27 181 39 624 222 90 21 chr6 836684 836873 -181578369 + L1ME2 LINE L1 5963 6164 0 21 71 0 0 chr6 838925 838967 -181576275 + AT_rich Low_complexity Low_complexity 1 42 0 371 254 123 0 chr6 841129 841259 -181573983 - MER63A DNA MER1_type -9 201 56 3541 47 0 0 chr6 841454 841859 -181573383 - L1PA5 LINE L1 -2 6152 5748 4956 40 2 0 chr6 841859 842478 -181572764 + L1P LINE L1 2831 3450 -2696 885 219 59 0 chr6 842478 842697 -181572545 + Tigger6 DNA MER2_type 1364 1595 -2 337 339 58 37 chr6 843739 843928 -181571314 + MIR SINE MIR 49 241 -21 229 338 90 7 chr6 844053 844198 -181571044 - L2 LINE L2 -1069 2245 2089 427 258 81 66 chr6 844209 844407 -181570835 + MER63A DNA MER1_type 1 201 -9 623 227 97 5 chr6 849141 849326 -181565916 - L1ME2 LINE L1 0 6164 5963 2052 133 3 0 chr6 850029 850359 -181564883 + AluSx SINE Alu 1 312 0 2381 91 0 0 chr6 850433 850729 -181564513 + AluSg SINE Alu 1 296 -14 12843 125 26 19 chr6 851455 853175 -181562067 + Tigger1 DNA MER2_type 7 1743 -675 2140 136 0 13 chr6 853175 853491 -181561751 + AluJo SINE Alu 1 312 0 12843 125 26 19 chr6 853491 853799 -181561443 + Tigger1 DNA MER2_type 1743 2048 -370 187 227 227 0 chr6 857036 857102 -181558140 - MIR SINE MIR -54 208 128 2074 107 30 13 chr6 857621 857920 -181557322 - AluSp SINE Alu -9 304 1 2201 134 9 166 chr6 858138 858688 -181556554 + LTR12 LTR ERV1 1 464 -250 300 284 90 26 chr6 858848 859003 -181556239 + MIR3 SINE MIR 36 200 -8 1645 160 52 4 chr6 859544 859812 -181555430 - AluJb SINE Alu -31 281 1 1044 204 53 49 chr6 864877 865162 -181550080 + L1MB8 LINE L1 5887 6172 -6 228 327 51 32 chr6 865413 865569 -181549673 + MIR3 SINE MIR 43 201 -7 22 35 0 0 chr6 865787 865816 -181549426 + AT_rich Low_complexity Low_complexity 1 29 0 35 41 0 0 chr6 868050 868099 -181547143 + AT_rich Low_complexity Low_complexity 1 49 0 866 293 107 3 chr6 868346 868711 -181546531 - L1ME2 LINE L1 -277 5885 5483 455 173 5 38 chr6 868737 868922 -181546320 + CT-rich Low_complexity Low_complexity 1 179 0 2428 97 0 0 chr6 868927 869236 -181546006 - AluSq SINE Alu -4 309 1 212 179 0 0 chr6 869299 869338 -181545904 + (TGAA)n Simple_repeat Simple_repeat 2 40 0 201 261 0 0 chr6 869697 869785 -181545457 + A-rich Low_complexity Low_complexity 1 88 0 231 289 12 12 chr6 870475 870558 -181544684 + L1MC/D LINE L1 5578 5660 -699 2059 108 10 51 chr6 870817 871131 -181544111 + AluSg SINE Alu 1 301 -9 269 198 42 0 chr6 871549 871645 -181543597 + (TCTA)n Simple_repeat Simple_repeat 3 102 0 562 75 47 0 chr6 871661 871767 -181543475 + (TCTA)n Simple_repeat Simple_repeat 2 112 0 498 140 26 18 chr6 871817 871931 -181543311 + CT-rich Low_complexity Low_complexity 1 115 0 443 256 32 13 chr6 872183 872339 -181542903 - HAL1b LINE L1 -893 455 297 2288 89 0 0 chr6 873715 874007 -181541235 + AluY SINE Alu 1 292 -19 291 253 208 25 chr6 874604 874806 -181540436 - L1M4 LINE L1 -1736 4410 4172 209 359 8 31 chr6 875963 876091 -181539151 - MIR3 SINE MIR -12 196 72 2247 117 0 0 chr6 877167 877476 -181537766 + AluSc SINE Alu 1 309 0 318 306 32 38 chr6 877985 878163 -181537079 - MLT1J LTR MaLR -55 456 280 1527 209 26 10 chr6 878163 878469 -181536773 - MER44D DNA MER2_type 0 609 29 384 308 62 16 chr6 878707 878979 -181536263 - MLT1I LTR MaLR -20 389 82 2171 100 0 4 chr6 881083 881383 -181533859 - AluSc SINE Alu 0 299 1 378 311 108 0 chr6 881413 881580 -181533662 - L1ME LINE L1 -727 5439 5255 3515 107 22 141 chr6 881598 882066 -181533176 - Tigger1 DNA MER2_type 0 2418 2073 1750 121 0 89 chr6 882066 882379 -181532863 - AluSx SINE Alu -27 285 1 3515 107 22 141 chr6 882379 882670 -181532572 - Tigger1 DNA MER2_type -345 2073 1749 518 29 0 14 chr6 883454 883523 -181531719 + (TCTA)n Simple_repeat Simple_repeat 3 70 0 379 271 133 23 chr6 884976 885278 -181529964 + LTR33 LTR ERVL 19 353 -168 369 284 76 18 chr6 885556 885831 -181529411 + L1M4 LINE L1 2709 2999 -3147 1391 274 74 35 chr6 886045 886609 -181528633 + ERVL LTR ERVL 1938 2494 -2991 1140 76 12 76 chr6 886669 886840 -181528402 - AluY SINE Alu -17 294 135 227 77 0 26 chr6 886842 886881 -181528361 + (TTTTA)n Simple_repeat Simple_repeat 1 38 0 15071 56 3 8 chr6 886883 889527 -181525715 - L1PA5 LINE L1 -26 6128 3499 896 85 119 0 chr6 889543 889661 -181525581 - AluY SINE Alu -179 132 1 842 214 50 79 chr6 890365 890645 -181524597 + L1M4 LINE L1 513 784 -5758 1018 308 60 31 chr6 891351 891471 -181523771 + LTR33 LTR ERVL 19 134 -387 2335 220 25 35 chr6 891471 892021 -181523221 + LTR55 LTR ERV 2 546 -2 1018 308 60 31 chr6 892021 892315 -181522927 + LTR33 LTR ERVL 134 445 -76 1056 322 55 34 chr6 892390 892971 -181522271 - ERVL LTR ERVL -2070 3694 3102 209 214 112 56 chr6 892971 893060 -181522182 - L2 LINE L2 -2042 1272 1179 342 224 31 68 chr6 893098 893290 -181521952 - L1M4c LINE L1 -4026 2358 2174 2118 107 0 3 chr6 896607 896897 -181518345 + AluSx SINE Alu 13 301 -11 483 261 96 6 chr6 897801 897958 -181517284 + MER5B DNA MER1_type 3 173 -5 312 27 0 0 chr6 898870 898907 -181516335 + (CA)n Simple_repeat Simple_repeat 2 38 0 2260 84 18 0 chr6 898921 899206 -181516036 + AluSc SINE Alu 1 290 -19 2397 179 63 28 chr6 899410 899946 -181515296 + MER74A LTR ERVL 3 557 -1 366 23 0 0 chr6 899984 900027 -181515215 + (TG)n Simple_repeat Simple_repeat 2 44 0 869 193 64 5 chr6 900176 900363 -181514879 - L1MD2 LINE L1 -1 6358 6161 363 44 0 0 chr6 900363 900408 -181514834 + (TG)n Simple_repeat Simple_repeat 1 45 0 1976 118 3 0 chr6 900763 901050 -181514192 + L1PA10 LINE L1 4703 4990 -1156 7098 86 9 0 chr6 901055 902084 -181513158 + L1PA10 LINE L1 5105 6159 -9 770 326 8 4 chr6 902118 902360 -181512882 + MIR SINE MIR 20 262 0 988 120 14 0 chr6 902715 902857 -181512385 + THE1C LTR MaLR 1 144 -231 450 36 0 0 chr6 902906 902962 -181512280 + (A)n Simple_repeat Simple_repeat 1 56 0 1692 229 31 52 chr6 904583 905143 -181510099 - L2 LINE L2 -3 3310 2777 2170 94 3 3 chr6 905143 905430 -181509812 - AluSg SINE Alu -23 287 1 1692 229 31 52 chr6 905430 905498 -181509744 - L2 LINE L2 -536 2777 2709 589 224 175 6 chr6 906409 906592 -181508650 + MIR SINE MIR 37 250 -12 1363 242 58 22 chr6 909140 909500 -181505742 - MLT1A2 LTR MaLR -1 373 1 266 332 111 36 chr6 911438 911718 -181503524 - L2 LINE L2 -58 3214 2914 468 272 28 61 chr6 912251 912431 -181502811 - MER5A DNA MER1_type 0 189 16 243 346 39 0 chr6 912524 912628 -181502614 - MIR SINE MIR -120 142 35 2657 134 136 86 chr6 913259 913826 -181501416 - LTR26E LTR ERV1 -27 595 1 230 368 47 74 chr6 914179 914437 -181500805 - L2 LINE L2 0 3272 3022 296 150 27 16 chr6 914637 914710 -181500532 - L1MC2 LINE L1 0 6333 6256 4783 158 34 19 chr6 914713 915597 -181499645 + L1MC1 LINE L1 5319 6215 -118 4030 128 16 19 chr6 916326 916959 -181498283 + MER41B LTR ERV1 1 631 -4 1164 179 24 8 chr6 917622 917873 -181497369 + L1MB7 LINE L1 5911 6165 -19 507 174 24 0 chr6 917922 918049 -181497193 + L1M4 LINE L1 5202 5331 -832 365 286 45 9 chr6 918056 918168 -181497074 - L1MC4 LINE L1 -1341 6701 6586 358 291 0 0 chr6 918162 918241 -181497001 + L1MC4 LINE L1 6614 6692 -1350 * 674 45 0 0 chr6 918242 918330 -181496912 + L1MC/D LINE L1 5360 5447 -897 1654 161 42 98 chr6 918389 918799 -181496443 - MLT1B LTR MaLR -3 387 1 668 119 198 0 chr6 918799 918925 -181496317 + L1MC/D LINE L1 5617 5767 -577 1619 223 95 63 chr6 920503 921028 -181494214 - MLT1F LTR MaLR 0 542 1 302 0 26 0 chr6 923574 923612 -181491630 + (CAAA)n Simple_repeat Simple_repeat 2 40 0 3095 147 106 19 chr6 923841 924433 -181490809 + MER73 LTR ERVL 1 644 0 13984 75 3 8 chr6 924658 924848 -181490394 + L1PA7 LINE L1 3491 3680 -2474 231 36 0 0 chr6 924848 924876 -181490366 + (CA)n Simple_repeat Simple_repeat 1 28 0 13984 75 3 8 chr6 924876 925846 -181489396 + L1PA7 LINE L1 3680 4653 -1501 2781 6 0 9 chr6 925846 926162 -181489080 + AluYb8 SINE Alu 1 313 -5 13984 75 3 8 chr6 926162 927676 -181487566 + L1PA7 LINE L1 4653 6149 -5 1687 186 73 35 chr6 927791 928162 -181487080 + MLT1B LTR MaLR 6 390 0 444 224 154 21 chr6 928185 928328 -181486914 + MLT1H LTR MaLR 11 172 -377 298 286 214 0 chr6 928429 928555 -181486687 + MLT1H LTR MaLR 392 544 -5 192 389 18 9 chr6 930953 931066 -181484176 - MIR SINE MIR -74 134 21 2465 53 0 0 chr6 931353 931655 -181483587 - AluY SINE Alu -9 302 1 26 30 0 0 chr6 931882 931915 -181483327 + AT_rich Low_complexity Low_complexity 1 33 0 540 126 0 0 chr6 932249 932336 -181482906 + (TCCA)n Simple_repeat Simple_repeat 2 88 0 920 143 6 0 chr6 932347 932515 -181482727 + (TCCA)n Simple_repeat Simple_repeat 2 170 0 579 213 0 0 chr6 932526 932667 -181482575 + (TCCA)n Simple_repeat Simple_repeat 2 142 0 819 183 0 0 chr6 932678 932853 -181482389 + (TCCA)n Simple_repeat Simple_repeat 4 178 0 413 264 0 85 chr6 932856 932985 -181482257 - L2 LINE L2 -5 3308 3191 208 260 0 0 chr6 933673 933723 -181481519 + L2 LINE L2 3258 3307 -6 2924 156 112 55 chr6 934494 934568 -181480674 - LTR8A LTR ERV1 0 727 659 1971 75 39 29 chr6 934568 934869 -181480373 + AluY SINE Alu 1 304 0 2924 156 112 55 chr6 934869 935481 -181479761 - LTR8A LTR ERV1 -68 659 1 249 33 0 0 chr6 936113 936143 -181479099 + (TG)n Simple_repeat Simple_repeat 2 31 0 24 32 0 0 chr6 939267 939298 -181475944 + AT_rich Low_complexity Low_complexity 1 31 0 552 194 0 0 chr6 939314 939412 -181475830 + FLAM_C SINE Alu 26 123 -20 2107 94 3 23 chr6 940075 940382 -181474860 + AluSg SINE Alu 1 301 -9 21 36 0 0 chr6 941992 942020 -181473222 + AT_rich Low_complexity Low_complexity 1 28 0 2182 88 3 10 chr6 942133 942429 -181472813 - AluSp SINE Alu -19 294 1 2500 34 0 0 chr6 942740 943034 -181472208 + AluY SINE Alu 1 294 -17 263 342 221 9 chr6 943126 943348 -181471894 - L3 LINE CR1 -5 1572 1304 241 263 288 0 chr6 944809 944889 -181470353 - L2 LINE L2 0 3313 3211 2082 201 21 31 chr6 945305 945787 -181469455 - L1MB7 LINE L1 -7 6177 5701 1918 159 31 3 chr6 945794 946121 -181469121 + Tigger4(Zombi) DNA MER2_type 1 336 -2395 1938 100 0 25 chr6 946123 946404 -181468838 + Tigger4(Zombi) DNA MER2_type 2457 2730 -1 2347 157 54 25 chr6 946405 946881 -181468361 - L1MB7 LINE L1 -489 5689 5196 2117 114 7 0 chr6 946881 947180 -181468062 - AluSx SINE Alu -9 303 3 2347 157 54 25 chr6 947180 947265 -181467977 - L1MB7 LINE L1 -982 5196 5115 2179 138 62 8 chr6 948118 948487 -181466755 + MLT1B LTR MaLR 1 389 -1 276 288 129 30 chr6 948649 948833 -181466409 - MIR SINE MIR -50 212 14 22 35 0 0 chr6 949069 949098 -181466144 + AT_rich Low_complexity Low_complexity 1 29 0 267 214 36 12 chr6 950340 950424 -181464818 + (TCTA)n Simple_repeat Simple_repeat 1 86 0 231 309 12 24 chr6 953853 953937 -181461305 + MIR3 SINE MIR 115 197 -11 313 262 87 10 chr6 953941 954044 -181461198 + L1MC4 LINE L1 7928 8038 -4 3063 196 97 68 chr6 954148 954987 -181460255 + MER21B LTR ERV1 1 863 0 190 229 0 0 chr6 955327 955362 -181459880 - L2 LINE L2 -1433 1881 1847 197 244 37 6 chr6 955380 955448 -181459794 - MIR SINE MIR -56 152 81 249 33 0 0 chr6 956221 956251 -181458991 + (TTCA)n Simple_repeat Simple_repeat 2 31 0 21 57 0 0 chr6 956849 956884 -181458358 + AT_rich Low_complexity Low_complexity 1 35 0 279 339 42 36 chr6 958276 958444 -181456798 - MIR SINE MIR -73 189 21 180 0 0 0 chr6 960586 960606 -181454636 + (CATA)n Simple_repeat Simple_repeat 4 23 0 874 189 83 152 chr6 960667 960871 -181454371 - MLT1A2 LTR MaLR -8 382 218 369 0 0 0 chr6 960871 960912 -181454330 + (TG)n Simple_repeat Simple_repeat 1 41 0 874 189 83 152 chr6 960912 961115 -181454127 - MLT1A2 LTR MaLR -172 218 3 1869 132 0 4 chr6 961220 961564 -181453678 - AluY SINE Alu 0 343 1 1779 172 67 6 chr6 961924 962284 -181452958 - L1MB3 LINE L1 -9 6174 5793 644 178 159 25 chr6 962312 962475 -181452767 + MER58A DNA MER1_type 40 224 0 23 54 0 0 chr6 963447 963484 -181451758 + AT_rich Low_complexity Low_complexity 1 37 0 1103 191 9 43 chr6 964161 964392 -181450850 + MER58A DNA MER1_type 2 224 0 1971 121 0 0 chr6 964662 964972 -181450270 - AluSx SINE Alu 0 310 1 272 313 0 12 chr6 965213 965293 -181449949 + MIR SINE MIR 23 101 -107 269 237 97 72 chr6 965631 965814 -181449428 - MLT1J2 LTR MaLR -215 231 44 552 258 129 15 chr6 966346 966610 -181448632 + LTR50 LTR ERVL 502 795 0 225 291 80 117 chr6 967319 967532 -181447710 + L2 LINE L2 3063 3267 -5 264 214 0 43 chr6 969313 969383 -181445859 + (CACCAT)n Simple_repeat Simple_repeat 5 71 0 2137 114 0 13 chr6 969568 969876 -181445366 - AluSg SINE Alu -2 308 5 1505 123 35 15 chr6 969947 970207 -181445035 + L1MA5A LINE L1 6030 6294 -3 324 211 0 0 chr6 971969 972026 -181443216 - FRAM/FAM SINE Alu -118 57 1 208 318 34 23 chr6 972755 972843 -181442399 + MIR SINE MIR 36 124 -84 195 297 122 0 chr6 972874 972948 -181442294 - L2 LINE L2 -32 3281 3199 623 89 0 10 chr6 972951 973052 -181442190 + (GA)n Simple_repeat Simple_repeat 1 100 0 547 250 128 0 chr6 973209 973397 -181441845 - MER5C DNA MER1_type 0 324 113 268 229 0 48 chr6 973409 973492 -181441750 + CT-rich Low_complexity Low_complexity 4 82 0 3107 254 155 44 chr6 973601 974394 -181440848 + L1MC4 LINE L1 6469 7172 -870 2207 117 43 81 chr6 974394 974781 -181440461 + MSTB LTR MaLR 1 401 -25 314 0 49 0 chr6 974781 974822 -181440420 + (TTTG)n Simple_repeat Simple_repeat 2 44 0 1755 122 4 11 chr6 974827 975105 -181440137 - AluSq SINE Alu -37 276 1 2144 121 0 3 chr6 975112 975426 -181439816 - AluSq SINE Alu 0 313 1 2207 117 43 81 chr6 975426 975467 -181439775 + MSTB LTR MaLR 411 426 0 3107 254 155 44 chr6 975467 976089 -181439153 + L1MC4 LINE L1 7172 8042 0 270 104 0 62 chr6 976091 976139 -181439103 - MER5C DNA MER1_type -201 123 79 1372 166 22 25 chr6 977347 977625 -181437617 - AluJo SINE Alu -25 287 11 677 199 46 7 chr6 977903 978054 -181437188 - MER45A DNA AcHobo 0 178 22 2005 87 11 7 chr6 978098 978374 -181436868 + AluSx SINE Alu 24 300 -12 940 286 74 25 chr6 978995 979428 -181435814 + L1ME3A LINE L1 5513 5966 -204 332 45 76 0 chr6 979556 979622 -181435620 + (TCTA)n Simple_repeat Simple_repeat 4 74 0 309 343 63 58 chr6 979622 980004 -181435238 - L1MEd LINE L1 -4935 1184 801 612 95 71 0 chr6 980004 980172 -181435070 + (TCTA)n Simple_repeat Simple_repeat 1 180 0 528 273 122 65 chr6 980426 980811 -181434431 - MLT1J LTR MaLR 0 511 105 341 252 52 60 chr6 981158 981625 -181433617 - L1MC5 LINE L1 -183 8058 1922 303 201 62 113 chr6 981618 981812 -181433430 + L1MC5 LINE L1 7572 7755 -206 * 326 244 26 52 chr6 981763 981878 -181433364 - L1MC5 LINE L1 -4335 2091 1980 * 356 239 35 63 chr6 981845 981987 -181433255 - L1MC5 LINE L1 -4335 2091 1954 1247 244 58 22 chr6 984014 984374 -181430868 + MLT1A2 LTR MaLR 1 373 -1 605 229 175 6 chr6 986372 986555 -181428687 - MIR SINE MIR -12 250 37 231 36 0 0 chr6 987537 987565 -181427677 + (GA)n Simple_repeat Simple_repeat 2 29 0 182 326 0 0 chr6 987617 987666 -181427576 + L2 LINE L2 3265 3313 0 234 231 0 0 chr6 988272 988324 -181426918 + C-rich Low_complexity Low_complexity 1 52 0 245 309 99 66 chr6 988746 988898 -181426344 - L2 LINE L2 -5 3267 3111 391 316 56 56 chr6 989012 989243 -181425999 - MIR SINE MIR -28 234 4 1881 92 0 11 chr6 989556 989817 -181425425 - AluSg SINE Alu -14 296 39 1961 114 0 46 chr6 990834 991141 -181424101 - AluSg SINE Alu -17 293 1 3380 108 124 2 chr6 991185 991703 -181423539 + LTR12 LTR ERV1 1 581 -133 275 353 0 20 chr6 991991 992093 -181423149 + MIR SINE MIR 84 183 -79 2179 138 80 31 chr6 992213 992626 -181422616 + Tigger2a DNA MER2_type 2 434 0 315 278 114 102 chr6 992699 993033 -181422209 - L2 LINE L2 -1 3271 2934 2222 191 33 9 chr6 993195 993645 -181421597 - LOR1b LTR ERV1 0 461 1 4433 108 68 85 chr6 995572 996371 -181418871 + LTR1 LTR ERV1 1 785 0 16129 155 61 27 chr6 996371 999291 -181415951 + HUERS-P2 LTR ERV1 1 3088 0 4134 121 74 74 chr6 999334 1000119 -181415123 + LTR1 LTR ERV1 1 785 0 2175 228 34 15 chr6 1001293 1001829 -181413413 + L1MC3 LINE L1 7240 7785 0 667 310 31 31 chr6 1001879 1002105 -181413137 - MIR SINE MIR -1 261 36 322 290 140 11 chr6 1002259 1002445 -181412797 + L1ME3 LINE L1 416 625 -6096 505 297 76 42 chr6 1003008 1003458 -181411784 + L1ME3 LINE L1 1314 1747 -4793 2701 110 0 3 chr6 1003458 1003823 -181411419 - THE1B LTR MaLR 0 364 1 505 297 76 42 chr6 1003823 1003909 -181411333 + L1ME3 LINE L1 1747 1872 -4668 5094 45 0 0 chr6 1003909 1004513 -181410729 + L1PA5 LINE L1 5550 6153 -1 505 297 76 42 chr6 1004513 1004528 -181410714 + L1ME3 LINE L1 1872 1885 -4655 * 1819 266 96 41 chr6 1004524 1005028 -181410214 + L1ME3 LINE L1 4147 4622 -1934 2335 54 0 7 chr6 1005028 1005325 -181409917 + AluY SINE Alu 1 295 -16 1819 266 96 41 chr6 1005325 1005869 -181409373 + L1ME3 LINE L1 4622 6526 -30 354 289 86 13 chr6 1005940 1006241 -181409001 + L1ME LINE L1 3316 3638 -2902 22 0 0 0 chr6 1006754 1006776 -181408466 + AT_rich Low_complexity Low_complexity 1 22 0 6124 43 1 0 chr6 1006966 1007690 -181407552 - L1PA7 LINE L1 -11 6143 5419 1252 182 26 45 chr6 1007690 1007959 -181407283 - AluJb SINE Alu -35 277 14 427 274 65 38 chr6 1008012 1008198 -181407044 + L1ME LINE L1 5596 5786 -754 288 257 105 66 chr6 1008394 1008546 -181406696 + L1ME LINE L1 5940 6097 -467 234 0 0 0 chr6 1008888 1008914 -181406328 + (A)n Simple_repeat Simple_repeat 1 26 0 237 327 106 10 chr6 1009436 1009540 -181405702 - L2 LINE L2 -8 3264 3151 382 323 158 30 chr6 1009771 1009935 -181405307 - MER91A DNA MER1_type -11 185 1 1621 216 8 14 chr6 1011374 1011730 -181403512 - L1MC1 LINE L1 -1 6332 5979 238 170 19 19 chr6 1011770 1011823 -181403419 - L1MC1 LINE L1 -360 5984 5932 193 260 188 21 chr6 1012347 1012443 -181402799 + MIR SINE MIR 38 149 -59 476 163 8 24 chr6 1012493 1012616 -181402626 + CT-rich Low_complexity Low_complexity 3 123 0 647 193 6 28 chr6 1012694 1012875 -181402367 + CT-rich Low_complexity Low_complexity 2 178 0 384 284 28 74 chr6 1013365 1013541 -181401701 - MIR3 SINE MIR -25 183 16 1550 180 82 0 chr6 1013578 1013945 -181401297 + MER74A LTR ERVL 132 528 -30 363 277 67 8 chr6 1014528 1014647 -181400595 + MIR SINE MIR 21 146 -116 211 350 50 0 chr6 1014651 1014751 -181400491 - MIR SINE MIR 0 262 158 405 247 101 30 chr6 1016520 1016704 -181398538 + MIR SINE MIR 1 185 -63 225 213 0 49 chr6 1017065 1017126 -181398116 + MIR SINE MIR 89 146 -62 772 189 23 34 chr6 1017178 1017233 -181398009 - MIR SINE MIR -37 225 171 2539 150 61 0 chr6 1017233 1017640 -181397602 - MSTB1 LTR MaLR 0 432 1 772 189 23 34 chr6 1017640 1017759 -181397483 - MIR SINE MIR -91 171 53 268 234 35 127 chr6 1019011 1019208 -181396034 - MER112 DNA MER1_type -48 212 34 2085 110 0 7 chr6 1019208 1019489 -181395753 + AluY SINE Alu 1 279 -32 186 233 0 0 chr6 1020953 1021013 -181394229 + (TA)n Simple_repeat Simple_repeat 1 60 0 58 54 0 0 chr6 1021021 1021114 -181394128 + AT_rich Low_complexity Low_complexity 1 93 0 512 219 47 72 chr6 1021121 1021399 -181393843 - L1MC5 LINE L1 -184 7777 7507 911 258 30 8 chr6 1021417 1021684 -181393558 - MER33 DNA MER1_type -30 294 22 555 308 120 23 chr6 1022179 1022572 -181392670 - L2 LINE L2 0 3313 2883 3526 296 116 16 chr6 1022622 1024368 -181390874 - L2 LINE L2 -1076 2238 319 1121 152 148 9 chr6 1024418 1024648 -181390594 - L1MB8 LINE L1 -60 6118 5857 21 36 0 0 chr6 1024951 1024979 -181390263 + AT_rich Low_complexity Low_complexity 1 28 0 261 324 47 7 chr6 1025327 1025475 -181389767 + L1ME4a LINE L1 5757 5910 -211 203 83 0 56 chr6 1026602 1026638 -181388604 - L2 LINE L2 0 3272 3239 378 262 92 39 chr6 1027782 1028011 -181387231 - L1ME4a LINE L1 -252 5869 5629 1552 255 74 4 chr6 1030483 1030954 -181384288 + MLT1D LTR MaLR 2 505 0 2255 101 0 0 chr6 1031602 1031890 -181383352 + AluSc SINE Alu 1 288 -21 212 357 0 0 chr6 1032127 1032197 -181383045 + MIR SINE MIR 45 114 -148 388 323 52 13 chr6 1032388 1032543 -181382699 - MIR SINE MIR -100 162 2 383 333 78 16 chr6 1033405 1033597 -181381645 - MIR SINE MIR -16 246 43 857 189 111 75 chr6 1034694 1035000 -181380242 + MER33 DNA MER1_type 7 323 -1 180 77 0 0 chr6 1039015 1039041 -181376201 + (CAAA)n Simple_repeat Simple_repeat 3 28 0 279 245 128 21 chr6 1039938 1040126 -181375116 + L1ME4a LINE L1 5742 5949 -172 189 274 16 0 chr6 1041506 1041568 -181373674 + MIR3 SINE MIR 103 165 -43 1771 151 15 8 chr6 1041726 1041991 -181373251 - AluJb SINE Alu -18 294 28 388 306 141 15 chr6 1042655 1042854 -181372388 + HAL1 LINE L1 286 509 -1998 1785 159 32 155 chr6 1043291 1043845 -181371397 + MER66B LTR ERV1 1 486 0 248 289 39 0 chr6 1043884 1043988 -181371254 + HAL1 LINE L1 991 1098 -1409 1017 193 133 9 chr6 1043989 1044222 -181371020 + L1M4c LINE L1 3 264 -6120 2304 80 3 13 chr6 1044589 1044888 -181370354 - AluY SINE Alu -15 296 1 1108 263 117 52 chr6 1045359 1045949 -181369293 - HAL1 LINE L1 -644 1863 1236 2278 152 49 0 chr6 1046668 1047037 -181368205 - MLT1B LTR MaLR -3 387 1 549 211 75 25 chr6 1047551 1047712 -181367530 - MER5B DNA MER1_type -5 173 5 204 267 17 17 chr6 1047807 1047867 -181367375 + L2 LINE L2 3138 3197 -75 1645 161 46 14 chr6 1048049 1048329 -181366913 + AluJo SINE Alu 1 289 -23 29 28 0 0 chr6 1048647 1048683 -181366559 + AT_rich Low_complexity Low_complexity 1 36 0 2706 97 11 0 chr6 1048850 1049211 -181366031 - L1PB1 LINE L1 -5 6146 5782 239 77 0 26 chr6 1049211 1049250 -181365992 + (TA)n Simple_repeat Simple_repeat 1 38 0 298 228 65 11 chr6 1049258 1049350 -181365892 - L1MC4 LINE L1 -1343 6699 6603 228 268 0 31 chr6 1049355 1049452 -181365790 - L1MC4 LINE L1 -1340 6702 6609 5799 161 8 26 chr6 1049491 1051197 -181364045 - L1P5 LINE L1 -360 5791 4121 9331 152 48 8 chr6 1051225 1052113 -181363129 - L1PBa LINE L1 -2508 4354 3503 2485 91 0 0 chr6 1052113 1052421 -181362821 - AluY SINE Alu -1 310 3 9331 152 48 8 chr6 1052421 1054333 -181360909 - L1PBa LINE L1 -3359 3503 1441 2607 141 19 2 chr6 1054330 1054748 -181360494 - L1PBa LINE L1 -6436 427 3 * 2235 92 30 0 chr6 1057372 1057667 -181357575 - AluSq SINE Alu -9 304 1 525 287 106 11 chr6 1057723 1057911 -181357331 - MIR SINE MIR -27 235 30 276 308 115 20 chr6 1057968 1058160 -181357082 + L3b LINE CR1 1123 1346 -237 1661 129 47 8 chr6 1058160 1058415 -181356827 + AluSx SINE Alu 39 303 -9 276 308 115 20 chr6 1058415 1058475 -181356767 + L3b LINE CR1 1346 1399 -184 2458 55 0 19 chr6 1058515 1058822 -181356420 + AluY SINE Alu 1 301 -10 15722 98 3 2 chr6 1060189 1063083 -181352159 - L1PA8 LINE L1 0 6172 3275 1513 209 6 3 chr6 1063526 1063852 -181351390 - L1M4 LINE L1 -1034 5112 4786 532 184 9 9 chr6 1063855 1063969 -181351273 + L1MC/D LINE L1 2297 2410 -3974 311 200 12 12 chr6 1064110 1064195 -181351047 + L1MC/D LINE L1 2474 2558 -3824 2894 233 109 23 chr6 1064225 1064558 -181350684 + L1MC/D LINE L1 2696 2999 -3383 2945 149 2 7 chr6 1064558 1064988 -181350254 - MSTA LTR MaLR 0 428 1 2894 233 109 23 chr6 1064988 1065684 -181349558 + L1MC/D LINE L1 2999 3813 -2569 1188 96 0 0 chr6 1065684 1065830 -181349412 + AluY SINE Alu 1 146 -165 1354 188 49 62 chr6 1065830 1066154 -181349088 + THE1C LTR MaLR 56 375 0 4575 212 17 18 chr6 1066154 1067368 -181347874 + L1MC/D LINE L1 4363 5589 -793 261 230 50 50 chr6 1067584 1067684 -181347558 + L1MC/D LINE L1 6024 6123 -1921 630 294 61 62 chr6 1067937 1068953 -181346289 + L1ME3A LINE L1 4931 5927 -243 462 155 54 0 chr6 1069046 1069214 -181346028 + (TCTA)n Simple_repeat Simple_repeat 1 177 0 212 158 18 0 chr6 1069235 1069292 -181345950 + (TCTA)n Simple_repeat Simple_repeat 4 61 0 556 163 29 6 chr6 1069322 1069494 -181345748 + (TCTA)n Simple_repeat Simple_repeat 3 178 0 1023 257 75 18 chr6 1069965 1070354 -181344888 - LTR16A LTR ERVL 0 450 40 1823 182 28 23 chr6 1070944 1071379 -181343863 + L1MB7 LINE L1 5748 6184 0 203 218 36 0 chr6 1071880 1071935 -181343307 + L2 LINE L2 3216 3272 0 485 239 158 16 chr6 1072222 1072406 -181342836 - MIR SINE MIR -6 256 47 1540 194 56 48 chr6 1073042 1073419 -181341823 - MLT1B LTR MaLR -8 382 3 3204 176 125 3 chr6 1073651 1074315 -181340927 - MER49 LTR ERV1 0 923 179 300 27 0 0 chr6 1075660 1075697 -181339545 + (CAAA)n Simple_repeat Simple_repeat 2 38 0 421 234 71 26 chr6 1078051 1078238 -181337004 - L1MC4a LINE L1 0 7995 7623 491 217 11 11 chr6 1078253 1078433 -181336809 + CT-rich Low_complexity Low_complexity 1 180 0 1622 121 0 0 chr6 1079815 1080039 -181335203 - AluSg/x SINE Alu -4 308 85 339 78 0 0 chr6 1080222 1080273 -181334969 + (CA)n Simple_repeat Simple_repeat 1 51 0 1293 245 233 70 chr6 1080848 1081788 -181333454 + L1MC4 LINE L1 6716 7808 0 1423 121 9 23 chr6 1081983 1082198 -181333044 + AluJo SINE Alu 58 269 -43 398 305 34 51 chr6 1083914 1084091 -181331151 - MIR3 SINE MIR -2 206 33 198 0 0 0 chr6 1084256 1084278 -181330964 + (CA)n Simple_repeat Simple_repeat 2 23 0 4024 163 40 19 chr6 1084278 1085039 -181330203 - L1MB3 LINE L1 -27 6156 5377 350 185 12 0 chr6 1085669 1085750 -181329492 + CT-rich Low_complexity Low_complexity 4 85 0 1737 209 57 27 chr6 1087049 1087489 -181327753 - MLT1D LTR MaLR -2 503 51 270 0 0 0 chr6 1087504 1087534 -181327708 + (TG)n Simple_repeat Simple_repeat 1 30 0 1117 226 66 8 chr6 1089594 1089851 -181325391 + MLT1A1 LTR MaLR 70 341 -24 1394 119 0 0 chr6 1089851 1090053 -181325189 - L1PA8 LINE L1 -867 5279 5078 6786 72 7 9 chr6 1090053 1090946 -181324296 + L1PA8 LINE L1 5276 6172 0 262 224 0 0 chr6 1090981 1091030 -181324212 + MLT1A1 LTR MaLR 324 372 -2 21 0 0 0 chr6 1091459 1091480 -181323762 + AT_rich Low_complexity Low_complexity 1 21 0 233 275 76 64 chr6 1092215 1092386 -181322856 - MER5B DNA MER1_type -2 176 4 441 270 42 46 chr6 1092396 1092633 -181322609 + MIR SINE MIR 19 261 -1 298 329 90 26 chr6 1094089 1094244 -181320998 - L2 LINE L2 0 3272 3108 365 288 79 10 chr6 1094367 1094552 -181320690 + MIR SINE MIR 12 200 -62 247 269 15 0 chr6 1095066 1095133 -181320109 - MIR3 SINE MIR -54 154 87 422 299 201 11 chr6 1095136 1095504 -181319738 - LTR16B LTR ERVL -24 440 3 738 324 108 21 chr6 1095937 1096562 -181318680 - ERVL LTR ERVL -2327 3437 2727 546 92 11 59 chr6 1096610 1096710 -181318532 - LTR12 LTR ERV1 0 714 481 294 198 66 22 chr6 1096712 1096803 -181318439 - LTR30 LTR ERV1 -80 642 548 1067 119 37 107 chr6 1096804 1097048 -181318194 - LTR12 LTR ERV1 -435 279 53 238 250 0 0 chr6 1097048 1097100 -181318142 - LTR30 LTR ERV1 -670 52 1 1535 306 88 36 chr6 1097164 1098020 -181317222 - ERVL LTR ERVL -2406 2590 1691 523 365 48 22 chr6 1098690 1099188 -181316054 - ERVL LTR ERVL -4483 513 3 366 318 16 0 chr6 1100794 1100923 -181314319 + MER63A DNA MER1_type 63 193 -17 957 149 0 0 chr6 1102834 1103009 -181312233 + (GGGA)n Simple_repeat Simple_repeat 4 178 0 399 296 30 23 chr6 1103078 1103210 -181312032 + L2 LINE L2 3139 3271 -1 1415 186 164 0 chr6 1104458 1104770 -181310472 + MSTB LTR MaLR 16 378 -48 304 326 44 62 chr6 1105162 1105389 -181309853 + HAL1b LINE L1 1 223 -1125 24 24 0 24 chr6 1105405 1105425 -181309817 + AT_rich Low_complexity Low_complexity 1 20 -21 2916 19 0 0 chr6 1105425 1105743 -181309499 + AluYb8 SINE Alu 1 318 0 24 24 0 24 chr6 1105743 1105764 -181309478 + AT_rich Low_complexity Low_complexity 20 41 0 461 287 72 32 chr6 1105764 1106015 -181309227 + HAL1b LINE L1 232 492 -856 241 230 70 30 chr6 1106024 1106124 -181309118 + HAL1b LINE L1 634 737 -611 5341 202 49 16 chr6 1106336 1107607 -181307635 - L1M3 LINE L1 -622 5558 4219 2405 85 0 0 chr6 1107607 1107900 -181307342 - AluY SINE Alu -12 299 7 5341 202 49 16 chr6 1107900 1108096 -181307146 - L1M3 LINE L1 -1961 4219 4031 215 152 22 0 chr6 1108684 1108730 -181306512 + (TG)n Simple_repeat Simple_repeat 2 48 0 1934 264 34 21 chr6 1108747 1109358 -181305884 + L1MC4a LINE L1 5284 5902 -1906 2167 121 0 13 chr6 1109492 1109799 -181305443 - AluSx SINE Alu -9 303 1 22 35 0 0 chr6 1109819 1109848 -181305394 + AT_rich Low_complexity Low_complexity 1 29 0 420 217 65 65 chr6 1110381 1110519 -181304723 - MER112 DNA MER1_type -7 253 116 215 314 59 85 chr6 1110562 1110680 -181304562 - L2 LINE L2 -36 3236 3122 2178 105 21 0 chr6 1112298 1112584 -181302658 + AluSg SINE Alu 1 292 -18 234 0 0 0 chr6 1112706 1112732 -181302510 + (TTTG)n Simple_repeat Simple_repeat 1 26 0 243 0 0 0 chr6 1113935 1113962 -181301280 + (TG)n Simple_repeat Simple_repeat 2 28 0 432 188 89 0 chr6 1115515 1115616 -181299626 - L1MB2 LINE L1 0 6171 6062 2825 147 31 4 chr6 1116303 1116785 -181298457 - L1MB3 LINE L1 -10 6173 5679 1656 232 57 5 chr6 1116947 1117274 -181297968 - L1 LINE L1 -2649 3497 3143 183 100 0 0 chr6 1117274 1117304 -181297938 + (TTTG)n Simple_repeat Simple_repeat 2 31 0 1656 232 57 5 chr6 1117304 1117504 -181297738 - L1 LINE L1 -3003 3143 2955 872 176 70 20 chr6 1121098 1121297 -181293945 - AluJo SINE Alu -19 293 85 2174 104 3 0 chr6 1121739 1122047 -181293195 + AluSc SINE Alu 1 309 0 1600 167 56 44 chr6 1122061 1122170 -181293072 + L1MA5 LINE L1 5937 6043 -257 2065 102 21 0 chr6 1122170 1122453 -181292789 + AluSx SINE Alu 12 300 -12 1600 167 56 44 chr6 1122453 1122703 -181292539 + L1MA5 LINE L1 6043 6300 0 217 359 88 28 chr6 1123870 1124087 -181291155 + MIR SINE MIR 1 230 -32 345 308 51 0 chr6 1124526 1124643 -181290599 - L2 LINE L2 -5 3308 3186 335 295 36 58 chr6 1124645 1124784 -181290458 - MER5B DNA MER1_type -32 146 11 302 276 141 49 chr6 1124796 1124959 -181290283 - L2 LINE L2 -508 2806 2629 3513 195 64 12 chr6 1125439 1126130 -181289112 - MER21B LTR ERV1 -123 740 14 192 285 105 40 chr6 1126189 1126417 -181288825 - L2 LINE L2 -647 2667 2425 2466 153 50 10 chr6 1126488 1126892 -181288350 - MSTC LTR MaLR -8 420 1 2019 161 26 16 chr6 1127061 1127447 -181287795 - MLT1B LTR MaLR 0 390 1 2488 65 0 0 chr6 1128062 1128369 -181286873 + AluY SINE Alu 1 307 -4 393 275 9 28 chr6 1128439 1128548 -181286694 + L2 LINE L2 3162 3268 -4 220 331 6 0 chr6 1128920 1129092 -181286150 + (CATATA)n Simple_repeat Simple_repeat 6 178 0 316 306 6 0 chr6 1129122 1129295 -181285947 + (CAGAGA)n Simple_repeat Simple_repeat 5 178 0 696 262 17 17 chr6 1129787 1129959 -181285283 - MER20 DNA MER1_type -10 209 38 2360 67 0 0 chr6 1131497 1131795 -181283447 + AluY SINE Alu 1 298 -13 241 250 20 50 chr6 1132185 1132285 -181282957 - L1ME4a LINE L1 -61 6060 5964 609 169 17 25 chr6 1132291 1132409 -181282833 - FLAM_C SINE Alu -14 129 13 500 261 11 44 chr6 1132529 1132709 -181282533 - MER5B DNA MER1_type 0 178 5 3311 170 18 24 chr6 1133800 1134108 -181281134 + L1MB3 LINE L1 5519 5827 -356 2381 51 0 3 chr6 1134108 1134403 -181280839 + AluY SINE Alu 1 294 -17 3311 170 18 24 chr6 1134403 1134763 -181280479 + L1MB3 LINE L1 5827 6183 0 571 240 74 88 chr6 1135235 1135501 -181279741 - L1MC4 LINE L1 0 8042 7781 451 177 10 0 chr6 1135501 1135597 -181279645 + L1MB2 LINE L1 6073 6169 -2 571 240 74 88 chr6 1135597 1135693 -181279549 - L1MC4 LINE L1 -261 7781 7685 21 0 0 0 chr6 1135704 1135725 -181279517 + AT_rich Low_complexity Low_complexity 1 21 0 522 163 17 22 chr6 1135731 1135909 -181279333 + (TCTA)n Simple_repeat Simple_repeat 3 179 0 4061 241 60 12 chr6 1135948 1137112 -181278130 - L1MC4 LINE L1 -366 7676 6457 1397 154 16 36 chr6 1137359 1137716 -181277526 + Tigger2a DNA MER2_type 1 444 0 257 330 36 0 chr6 1138055 1138167 -181277075 - MLT1I LTR MaLR 0 409 294 361 285 42 76 chr6 1139891 1140154 -181275088 - MER102b DNA MER1_type 0 341 88 2074 118 13 0 chr6 1140569 1140874 -181274368 + AluSx SINE Alu 1 309 -3 352 335 80 4 chr6 1140940 1141179 -181274063 - MIR SINE MIR -3 259 3 195 302 16 0 chr6 1142317 1142380 -181272862 + MIR SINE MIR 82 145 -63 519 301 88 19 chr6 1142861 1143077 -181272165 - L1P LINE L1 -3089 3057 2827 505 161 32 0 chr6 1143083 1143176 -181272066 + L1PA16 LINE L1 6061 6156 -10 306 199 0 23 chr6 1143997 1144168 -181271074 + (TCTCTG)n Simple_repeat Simple_repeat 4 170 0 721 168 4 4 chr6 1144224 1144474 -181270768 + (TG)n Simple_repeat Simple_repeat 1 250 0 303 282 12 0 chr6 1145570 1145655 -181269587 - MER81 DNA DNA -27 87 2 1659 155 28 0 chr6 1146273 1146563 -181268679 - AluJo SINE Alu -14 298 1 181 194 0 28 chr6 1146706 1146742 -181268500 + L2 LINE L2 3227 3261 -11 244 234 117 97 chr6 1147541 1147686 -181267556 - MIR3 SINE MIR -30 178 31 652 94 0 0 chr6 1147694 1147779 -181267463 - AluJ/FLAM SINE Alu -217 95 11 428 247 23 40 chr6 1147843 1148017 -181267225 + L1MC5 LINE L1 7741 7911 -50 182 250 14 0 chr6 1148041 1148113 -181267129 + (TA)n Simple_repeat Simple_repeat 1 73 0 2148 101 6 19 chr6 1148250 1148567 -181266675 - AluSq SINE Alu 0 313 1 321 232 12 161 chr6 1148702 1148870 -181266372 - L2 LINE L2 -6 3307 3165 1106 202 164 13 chr6 1149018 1149335 -181265907 + MLT1A1 LTR MaLR 1 365 0 578 214 9 0 chr6 1149648 1149760 -181265482 + MER81 DNA DNA 2 114 0 21 0 0 0 chr6 1150377 1150398 -181264844 + AT_rich Low_complexity Low_complexity 1 21 0 2052 109 13 0 chr6 1151275 1151577 -181263665 - AluSq SINE Alu -7 306 1 826 199 92 24 chr6 1151996 1152202 -181263040 + MER58A DNA MER1_type 1 220 -4 2216 85 7 0 chr6 1154313 1154608 -181260634 + AluSq SINE Alu 1 297 -16 1183 109 55 0 chr6 1155205 1155388 -181259854 - L1PA14 LINE L1 -2 6159 5967 250 314 32 85 chr6 1156523 1156711 -181258531 - MIR SINE MIR -24 238 61 235 279 44 15 chr6 1157549 1157617 -181257625 - MIR3 SINE MIR -136 72 3 242 325 42 8 chr6 1157858 1157978 -181257264 + MIR SINE MIR 118 241 -21 611 327 44 31 chr6 1157998 1158224 -181257018 - MIR SINE MIR -23 239 11 2275 94 0 7 chr6 1158861 1159169 -181256073 + AluSq SINE Alu 1 306 -7 305 295 30 78 chr6 1159357 1159423 -181255819 - L1M4 LINE L1 -3316 2830 2762 2152 115 0 0 chr6 1159423 1159727 -181255515 - AluY SINE Alu -7 304 1 305 295 30 78 chr6 1159727 1159826 -181255416 - L1M4 LINE L1 -3384 2762 2673 286 277 170 0 chr6 1160345 1160457 -181254785 - L2 LINE L2 -4 3309 3179 297 167 0 0 chr6 1160982 1161030 -181254212 - L1MEd LINE L1 -5985 134 87 349 224 254 15 chr6 1161343 1161477 -181253765 + MIR SINE MIR 19 184 -78 186 351 91 0 chr6 1162015 1162092 -181253150 + MIR SINE MIR 179 262 0 261 286 31 10 chr6 1162094 1162192 -181253050 - L1MEd LINE L1 -6015 104 5 213 209 36 164 chr6 1162939 1163016 -181252226 - L2 LINE L2 -30 3283 3222 2113 110 0 3 chr6 1163016 1163316 -181251926 + AluSx SINE Alu 1 299 -13 213 209 36 164 chr6 1163316 1163348 -181251894 - L2 LINE L2 -91 3222 3188 373 316 58 23 chr6 1163364 1163535 -181251707 - MIR SINE MIR -8 254 78 650 314 47 13 chr6 1164419 1164655 -181250587 - MIR SINE MIR 0 262 19 1254 296 101 25 chr6 1164663 1165508 -181249734 - L1MC4a LINE L1 -867 5492 5272 2435 53 0 0 chr6 1165711 1166014 -181249228 - AluY SINE Alu -8 303 1 2088 103 0 3 chr6 1166477 1166768 -181248474 - AluSg SINE Alu -20 290 1 1149 134 0 6 chr6 1167373 1167545 -181247697 - Tigger1 DNA MER2_type 0 2418 2248 381 136 0 45 chr6 1167547 1167613 -181247629 - Tigger1 DNA MER2_type -2355 63 1 2165 96 27 7 chr6 1167960 1168252 -181246990 - AluSg SINE Alu -11 299 2 290 288 12 0 chr6 1168836 1168916 -181246326 + L2 LINE L2 3184 3264 -49 21 36 0 0 chr6 1169110 1169138 -181246104 + AT_rich Low_complexity Low_complexity 1 28 0 2151 114 20 0 chr6 1169212 1169510 -181245732 + AluSx SINE Alu 1 304 -8 232 250 50 19 chr6 1169983 1170143 -181245099 + (CA)n Simple_repeat Simple_repeat 1 165 0 2368 88 0 16 chr6 1170335 1170641 -181244601 + AluSx SINE Alu 1 301 -11 264 179 0 39 chr6 1171144 1171222 -181244020 + (CAGG)n Simple_repeat Simple_repeat 1 75 0 1040 253 101 58 chr6 1171356 1172011 -181243231 - L1MC5 LINE L1 -30 7931 7249 728 103 9 0 chr6 1172085 1172201 -181243041 + (GGAA)n Simple_repeat Simple_repeat 3 119 0 24 0 0 0 chr6 1173264 1173288 -181241954 + AT_rich Low_complexity Low_complexity 1 24 0 22 35 0 0 chr6 1173615 1173644 -181241598 + AT_rich Low_complexity Low_complexity 1 29 0 225 94 0 0 chr6 1174810 1174842 -181240400 + (CAGA)n Simple_repeat Simple_repeat 1 32 0 380 304 32 0 chr6 1176751 1176876 -181238366 - L2 LINE L2 0 3313 3185 332 335 54 16 chr6 1177059 1177244 -181237998 - MIR3 SINE MIR -7 201 10 233 325 67 41 chr6 1178533 1178727 -181236515 - MIR3 SINE MIR -7 201 3 182 167 62 0 chr6 1180006 1180054 -181235188 + GA-rich Low_complexity Low_complexity 4 54 0 181 242 55 66 chr6 1181553 1181644 -181233598 - L2 LINE L2 -9 3263 3174 1724 193 42 28 chr6 1182009 1182367 -181232875 - MLT1A1 LTR MaLR -2 363 1 303 224 42 159 chr6 1183838 1184102 -181231140 + MER112 DNA MER1_type 1 233 -27 1497 206 59 6 chr6 1184631 1184951 -181230291 - MER58B DNA MER1_type -4 337 1 1716 151 27 38 chr6 1185522 1185814 -181229428 + AluJo SINE Alu 1 289 -23 288 0 0 0 chr6 1186759 1186791 -181228451 + (TG)n Simple_repeat Simple_repeat 2 33 0 2604 192 51 25 chr6 1186791 1187100 -181228142 - L1MB7 LINE L1 -11 6173 5874 1838 134 0 81 chr6 1187100 1187420 -181227822 - AluJo SINE Alu -14 298 5 2604 192 51 25 chr6 1187420 1187715 -181227527 - L1MB7 LINE L1 -310 5874 5553 1611 232 21 3 chr6 1187745 1188120 -181227122 - L1MA10 LINE L1 -7 6327 5946 2661 183 13 37 chr6 1188154 1188630 -181226612 + L1MA9 LINE L1 5042 5483 -819 236 136 0 0 chr6 1188630 1188674 -181226568 + LTR66 LTR ERVL 393 436 -174 2661 183 13 37 chr6 1188674 1189109 -181226133 + L1MA9 LINE L1 5483 5927 -375 318 26 0 0 chr6 1189917 1189956 -181225286 + (CCCTAA)n Simple_repeat Simple_repeat 6 44 0 1552 201 87 13 chr6 1191943 1192332 -181222910 + MSTC LTR MaLR 10 427 -1 1718 196 102 8 chr6 1193995 1194357 -181220885 + MSTD LTR MaLR 1 396 0 458 289 64 17 chr6 1194473 1194646 -181220596 - MLT1J LTR MaLR -330 181 1 631 243 10 2 chr6 1195481 1195653 -181219589 + L1P1 LINE L1 5604 5777 -362 604 240 8 0 chr6 1195862 1195991 -181219251 + AluJo SINE Alu 2 131 -181 1092 46 0 0 chr6 1195991 1196122 -181219120 - L1P2 LINE L1 -385 5770 5640 25 31 0 0 chr6 1196135 1196167 -181219075 + AT_rich Low_complexity Low_complexity 1 32 0 1207 151 0 0 chr6 1196167 1196339 -181218903 + AluJo SINE Alu 118 289 -23 573 290 106 44 chr6 1198264 1198585 -181216657 + MLT1J LTR MaLR 1 341 -170 397 274 115 0 chr6 1199350 1199463 -181215779 + MER94 DNA DNA 2 127 -7 2048 114 31 3 chr6 1201634 1201924 -181213318 + AluSx SINE Alu 1 298 -14 1228 63 11 6 chr6 1201946 1202121 -181213121 + (GAAA)n Simple_repeat Simple_repeat 4 179 0 378 258 31 31 chr6 1202701 1202829 -181212413 - LTR67 LTR ERVL 0 557 430 447 184 0 0 chr6 1203220 1203307 -181211935 + (TG)n Simple_repeat Simple_repeat 1 87 0 1737 164 9 50 chr6 1204921 1205244 -181209998 + AluJo SINE Alu 1 310 -2 238 232 0 53 chr6 1206714 1206904 -181208338 + CT-rich Low_complexity Low_complexity 1 180 0 662 182 75 44 chr6 1207880 1208039 -181207203 + L1ME LINE L1 138 301 -5904 759 277 152 16 chr6 1208073 1208653 -181206589 + L1ME LINE L1 703 1207 -4998 5658 131 51 30 chr6 1208927 1209277 -181205965 - L1MA5 LINE L1 -3 6297 5956 2320 84 13 0 chr6 1209277 1209576 -181205666 - AluSg SINE Alu -7 303 1 5658 131 51 30 chr6 1209576 1210756 -181204486 - L1MA5 LINE L1 -344 5956 4550 2296 61 7 0 chr6 1212558 1212877 -181202365 - AluY SINE Alu 0 321 1 2273 95 17 0 chr6 1213331 1213627 -181201615 + AluSp SINE Alu 1 301 -12 240 226 65 0 chr6 1213933 1213995 -181201247 + L2 LINE L2 3159 3224 -48 4376 257 83 12 chr6 1214178 1216103 -181199139 + L1MEc LINE L1 741 2805 -3410 515 77 0 121 chr6 1216103 1216155 -181199087 - MADE1 DNA Mariner 0 80 42 2147 114 7 14 chr6 1216155 1216452 -181198790 + AluSp SINE Alu 1 295 -18 515 77 0 121 chr6 1216452 1216490 -181198752 - MADE1 DNA Mariner -38 42 1 4376 257 83 12 chr6 1216490 1216771 -181198471 + L1MEc LINE L1 2805 3064 -3151 275 242 21 42 chr6 1217936 1218030 -181197212 - Charlie7 DNA MER1_type -5 2607 2516 4343 119 45 126 chr6 1218030 1218764 -181196478 + Tigger3b DNA MER2_type 2 794 -2235 993 89 0 0 chr6 1218764 1218888 -181196354 - AluSp/q SINE Alu -17 296 173 4343 119 45 126 chr6 1218888 1219301 -181195941 + Tigger3b DNA MER2_type 794 1177 -1852 2502 84 0 0 chr6 1219301 1219611 -181195631 - AluY SINE Alu -1 310 1 4343 119 45 126 chr6 1219611 1219663 -181195579 + Tigger3b DNA MER2_type 1177 1232 0 668 94 44 44 chr6 1221608 1221788 -181193454 + (CAGAGA)n Simple_repeat Simple_repeat 1 180 0 418 220 7 11 chr6 1221788 1222071 -181193171 + GA-rich Low_complexity Low_complexity 1 281 0 2076 146 108 10 chr6 1223459 1223849 -181191393 - MSTA LTR MaLR 0 428 1 451 268 8 0 chr6 1224376 1224499 -181190743 - MER58B DNA MER1_type 0 341 218 718 196 39 67 chr6 1224770 1224949 -181190293 + MER58A DNA MER1_type 43 216 -8 215 154 0 26 chr6 1225888 1225927 -181189315 + CT-rich Low_complexity Low_complexity 4 41 0 3605 121 13 0 chr6 1226184 1226730 -181188512 - L1PB4 LINE L1 -4 6152 5600 183 184 0 0 chr6 1228767 1228805 -181186437 + CT-rich Low_complexity Low_complexity 3 40 0 657 225 62 25 chr6 1229875 1230035 -181185207 + MER63A DNA MER1_type 10 175 -35 5303 122 46 21 chr6 1230273 1230792 -181184450 + MER4D LTR ERV1 1 506 -366 2619 106 8 13 chr6 1230792 1231169 -181184073 + THE1C LTR MaLR 1 375 0 10262 105 40 45 chr6 1231169 1232755 -181182487 + THE1C-int LTR MaLR 1 1578 -2 5303 122 46 21 chr6 1232755 1232768 -181182474 + MER4D LTR ERV1 506 517 -355 2410 129 11 11 chr6 1232768 1233141 -181182101 + THE1C LTR MaLR 1 373 -2 5303 122 46 21 chr6 1233141 1233457 -181181785 + MER4D LTR ERV1 517 872 0 375 193 0 36 chr6 1233640 1233723 -181181519 - Charlie1 DNA MER1_type -7 2754 2675 2900 206 72 20 chr6 1233775 1234465 -181180777 - Charlie1 DNA MER1_type -225 2536 1811 2646 92 29 46 chr6 1234471 1234885 -181180357 - L1PA15 LINE L1 -2 6163 5757 1599 83 0 62 chr6 1234886 1235127 -181180115 + L1P4 LINE L1 5470 5695 -470 683 292 40 40 chr6 1235132 1235502 -181179740 - Charlie1 DNA MER1_type -954 1807 1438 200 135 0 54 chr6 1235522 1235559 -181179683 - MER5A DNA MER1_type -152 37 3 22 56 0 0 chr6 1235797 1235833 -181179409 + AT_rich Low_complexity Low_complexity 1 36 0 1721 39 5 0 chr6 1235834 1236042 -181179200 - L1PA4 LINE L1 0 6155 5947 405 331 7 0 chr6 1236258 1236403 -181178839 + MIR SINE MIR 117 262 0 25 0 0 0 chr6 1237012 1237037 -181178205 + AT_rich Low_complexity Low_complexity 1 25 0 282 199 62 155 chr6 1237052 1237099 -181178143 - MLT1L LTR MaLR -4 611 561 2610 7 0 0 chr6 1237099 1237376 -181177866 + AluYa5 SINE Alu 35 311 0 282 199 62 155 chr6 1237376 1237489 -181177753 - MLT1L LTR MaLR -54 561 466 1164 157 42 0 chr6 1238915 1239132 -181176110 + L1MA9 LINE L1 5919 6144 -168 661 138 36 29 chr6 1239141 1239279 -181175963 - L1MA7 LINE L1 -1 6290 6152 982 149 36 10 chr6 1239279 1239471 -181175771 + L1MA9 LINE L1 6114 6312 0 305 340 43 7 chr6 1239552 1239693 -181175549 - MIR3 SINE MIR -15 193 48 239 274 154 8 chr6 1241235 1241352 -181173890 - MLT1L LTR MaLR -106 436 303 * 470 222 220 24 chr6 1241328 1241583 -181173659 - MLT1G3 LTR MaLR -200 395 4 228 192 19 19 chr6 1243051 1243103 -181172139 + MER94 DNA DNA 6 57 -77 1233 152 22 9 chr6 1243172 1243396 -181171846 + L1MA8 LINE L1 6054 6280 -11 276 231 0 0 chr6 1243414 1243466 -181171776 + MER94 DNA DNA 68 119 -15 1832 209 104 14 chr6 1243575 1244038 -181171204 + MLT1D LTR MaLR 1 653 -1 686 191 92 13 chr6 1244081 1244233 -181171009 - AluJb SINE Alu -12 300 137 367 271 80 0 chr6 1244496 1244673 -181170569 - MIR SINE MIR 0 262 68 445 251 57 11 chr6 1244745 1244920 -181170322 - MIR SINE MIR -34 228 46 301 253 12 12 chr6 1245543 1245626 -181169616 + MIR3 SINE MIR 108 190 -18 205 318 0 0 chr6 1245647 1245710 -181169532 + GA-rich Low_complexity Low_complexity 3 65 0 2482 85 3 0 chr6 1246571 1246877 -181168365 - AluSp SINE Alu -6 307 1 2218 95 3 3 chr6 1247315 1247598 -181167644 - AluSc SINE Alu -26 283 1 7012 69 8 0 chr6 1248076 1249079 -181166163 - L1PA7 LINE L1 -4 6150 5145 2143 69 10 3 chr6 1249080 1249369 -181165873 + L1PA7 LINE L1 4873 5163 -983 1739 162 98 0 chr6 1249808 1250123 -181165119 + MER7A DNA MER2_type 1 344 -2 250 262 16 0 chr6 1252155 1252216 -181163026 - L2 LINE L2 -25 3247 3186 2160 112 25 0 chr6 1254434 1254720 -181160522 + AluSg SINE Alu 1 293 -17 23 33 0 0 chr6 1255707 1255737 -181159505 + AT_rich Low_complexity Low_complexity 1 30 0 282 303 31 31 chr6 1255971 1256133 -181159109 + L1ME LINE L1 306 467 -5905 395 271 25 109 chr6 1256302 1256776 -181158466 + L1ME LINE L1 1186 1609 -4775 1576 112 0 14 chr6 1256777 1257000 -181158242 - AluSg/x SINE Alu -5 305 86 1028 188 5 30 chr6 1257069 1257271 -181157971 - AluJb SINE Alu -9 303 107 274 291 94 0 chr6 1257280 1257407 -181157835 + MIR SINE MIR 124 262 0 346 270 99 34 chr6 1258161 1258394 -181156848 - MIR SINE MIR -1 261 14 201 175 0 0 chr6 1259330 1259370 -181155872 + CT-rich Low_complexity Low_complexity 1 40 0 242 253 51 0 chr6 1259898 1259977 -181155265 + L2 LINE L2 3190 3272 0 384 141 62 18 chr6 1260432 1260716 -181154526 + (TAGA)n Simple_repeat Simple_repeat 1 296 0 504 72 0 0 chr6 1260729 1260798 -181154444 + (CAGA)n Simple_repeat Simple_repeat 3 71 0 2355 237 78 62 chr6 1261197 1261771 -181153471 + L1MEc LINE L1 34 631 -5765 540 148 30 20 chr6 1261771 1261872 -181153370 + U13 snRNA snRNA 2 103 -1 2355 237 78 62 chr6 1261872 1262259 -181152983 + L1MEc LINE L1 631 1010 -5386 402 303 8 0 chr6 1262357 1262479 -181152763 + MER94 DNA DNA 5 127 -7 2056 120 62 14 chr6 1264748 1265106 -181150136 + THE1C LTR MaLR 1 375 0 911 168 7 19 chr6 1265233 1265388 -181149854 + FRAM SINE Alu 1 152 -24 274 217 14 0 chr6 1266164 1266233 -181149009 + MIR3 SINE MIR 118 187 -21 26 30 0 0 chr6 1267235 1267268 -181147974 + AT_rich Low_complexity Low_complexity 1 33 0 251 246 204 24 chr6 1267396 1267563 -181147679 + MIR SINE MIR 66 262 0 45 69 0 0 chr6 1267571 1267658 -181147584 + AT_rich Low_complexity Low_complexity 1 87 0 513 232 176 67 chr6 1267791 1268361 -181146881 + L1ME4a LINE L1 5481 6121 0 1043 133 62 0 chr6 1269176 1269371 -181145871 - L1MA8 LINE L1 -1 6290 6084 551 277 94 89 chr6 1269448 1269820 -181145422 + MLT1J LTR MaLR 107 480 -31 2492 217 104 3 chr6 1270083 1270793 -181144449 + L1M4 LINE L1 2433 3214 -2932 412 287 132 49 chr6 1270846 1271111 -181144131 + L2 LINE L2 3023 3309 -4 383 398 39 21 chr6 1271315 1271647 -181143595 - L2 LINE L2 -341 2973 2636 604 232 151 16 chr6 1272420 1272605 -181142637 + MIR SINE MIR 47 256 -6 974 225 35 22 chr6 1273619 1273850 -181141392 + MIR SINE MIR 12 245 -17 199 341 45 38 chr6 1276430 1276562 -181138680 - MIR SINE MIR -128 134 2 234 316 57 62 chr6 1278105 1278282 -181136960 + MER5B DNA MER1_type 3 178 0 2435 199 17 2 chr6 1279481 1279958 -181135284 - MER31A LTR ERV1 0 485 2 219 255 0 109 chr6 1280379 1280563 -181134679 + (CATCC)n Simple_repeat Simple_repeat 4 167 0 209 295 46 29 chr6 1280780 1280953 -181134289 + (CCCCAG)n Simple_repeat Simple_repeat 2 177 0 219 310 55 0 chr6 1280967 1281112 -181134130 + (CCCCAG)n Simple_repeat Simple_repeat 2 154 0 201 182 55 18 chr6 1281130 1281185 -181134057 + GA-rich Low_complexity Low_complexity 1 57 0 682 150 87 40 chr6 1281530 1281703 -181133539 - MER53 DNA DNA 0 189 9 2073 92 0 20 chr6 1282586 1282881 -181132361 + AluSc SINE Alu 1 289 -20 392 276 130 73 chr6 1283214 1283262 -181131980 + MIR SINE MIR 49 93 -169 1802 141 47 81 chr6 1283262 1283646 -181131596 + THE1C LTR MaLR 5 375 0 392 276 130 73 chr6 1283646 1283789 -181131453 + MIR SINE MIR 93 251 -11 284 346 101 37 chr6 1283982 1284170 -181131072 + MIR3 SINE MIR 6 205 -3 593 219 55 34 chr6 1284533 1284679 -181130563 - MER63 DNA MER1_type -57 779 5 456 266 104 67 chr6 1285419 1285822 -181129420 + L1MC/D LINE L1 2810 3227 -2919 429 338 102 37 chr6 1286100 1287522 -181127720 + L1MC/D LINE L1 3322 4836 -1310 271 308 63 46 chr6 1287569 1287917 -181127325 + L1MC/D LINE L1 4778 5131 -1015 400 287 91 41 chr6 1288049 1288672 -181126570 + L1MC/D LINE L1 5175 5824 -747 * 576 202 18 40 chr6 1288649 1288816 -181126426 + L1ME2 LINE L1 5667 5835 -329 632 302 0 37 chr6 1288853 1289095 -181126147 + L1ME2 LINE L1 5919 6151 -13 341 241 63 94 chr6 1289138 1289329 -181125913 + L1MC4 LINE L1 7839 8023 -19 293 0 27 0 chr6 1289818 1289855 -181125387 + (TG)n Simple_repeat Simple_repeat 2 39 0 269 183 127 14 chr6 1290117 1290188 -181125054 + MER69 DNA AcHobo 2448 2526 0 1489 174 11 3 chr6 1290568 1290850 -181124392 + AluJb SINE Alu 1 284 -28 545 255 208 0 chr6 1291971 1292183 -181123059 + MIR SINE MIR 4 259 -3 23 54 0 0 chr6 1292209 1292246 -181122996 + AT_rich Low_complexity Low_complexity 1 37 0 984 156 146 35 chr6 1293835 1294034 -181121208 - Tigger2a DNA MER2_type -26 418 198 323 209 198 0 chr6 1294023 1294114 -181121128 - Tigger2a DNA MER2_type -325 109 1 * 428 271 64 53 chr6 1294556 1294744 -181120498 - MIR SINE MIR -26 236 47 833 228 25 10 chr6 1295048 1295250 -181119992 + MER20 DNA MER1_type 1 205 -14 372 59 0 0 chr6 1295289 1295340 -181119902 + (TGGA)n Simple_repeat Simple_repeat 1 51 0 281 293 84 95 chr6 1295573 1296014 -181119228 - L2 LINE L2 -832 2482 2047 323 216 0 81 chr6 1297284 1297395 -181117847 - MIR3 SINE MIR -18 190 89 1041 142 6 11 chr6 1297440 1297616 -181117626 - L1MA1 LINE L1 0 6302 6128 180 0 0 0 chr6 1299849 1299869 -181115373 + (TTC)n Simple_repeat Simple_repeat 2 21 0 831 158 0 8 chr6 1299874 1300001 -181115241 - FLAM_C SINE Alu -16 127 2 207 306 97 16 chr6 1300004 1300128 -181115114 - MIR3 SINE MIR -7 201 68 343 266 46 18 chr6 1300514 1300623 -181114619 - L2 LINE L2 -18 3295 3184 944 333 92 51 chr6 1300628 1301150 -181114092 - L2 LINE L2 -998 2316 1738 1535 65 0 0 chr6 1301150 1301349 -181113893 - L1PA4 LINE L1 0 6155 5957 944 333 92 51 chr6 1301349 1301750 -181113492 - L2 LINE L2 -1576 1738 1355 436 293 111 68 chr6 1302145 1302497 -181112745 - L2 LINE L2 -2604 710 344 1025 163 74 15 chr6 1302556 1302759 -181112483 - MER20 DNA MER1_type 0 219 5 206 292 210 52 chr6 1304590 1304712 -181110530 - L2 LINE L2 0 3313 3212 806 212 31 45 chr6 1304712 1304934 -181110308 - MER20 DNA MER1_type 0 219 1 206 292 210 52 chr6 1304934 1305078 -181110164 - L2 LINE L2 -101 3212 3005 218 371 60 0 chr6 1305615 1305731 -181109511 + L2 LINE L2 3148 3270 -2 860 287 5 0 chr6 1305741 1305964 -181109278 - MER58A DNA MER1_type 0 224 1 241 324 74 9 chr6 1306122 1306230 -181109012 - MIR3 SINE MIR -5 203 89 858 202 17 77 chr6 1307826 1308059 -181107183 + MER20 DNA MER1_type 1 219 0 1980 104 4 7 chr6 1308651 1308930 -181106312 + AluSx SINE Alu 24 301 -11 263 26 51 0 chr6 1311789 1311828 -181103414 + (TTTTA)n Simple_repeat Simple_repeat 3 43 0 189 107 0 0 chr6 1312062 1312090 -181103152 + (CACCAT)n Simple_repeat Simple_repeat 5 32 0 579 207 22 0 chr6 1312181 1312408 -181102834 - L1MA9 LINE L1 -21 6291 5964 2328 77 3 0 chr6 1312417 1312717 -181102525 - AluSp SINE Alu -12 301 1 552 239 60 24 chr6 1315107 1315274 -181099968 - MIR SINE MIR -73 189 17 233 178 0 0 chr6 1315977 1316022 -181099220 - L1MC4 LINE L1 -1339 6703 6659 21 0 0 0 chr6 1316984 1317005 -181098237 + AT_rich Low_complexity Low_complexity 1 21 0 254 329 35 12 chr6 1317024 1317109 -181098133 + L2 LINE L2 3019 3105 -167 638 264 96 65 chr6 1317575 1318059 -181097183 + LTR67 LTR ERVL 4 552 -5 407 268 78 33 chr6 1320367 1320520 -181094722 + MIR SINE MIR 26 185 -77 1000 133 40 0 chr6 1320865 1321038 -181094204 + L1MA8 LINE L1 6111 6290 -1 730 214 330 15 chr6 1321146 1321283 -181093959 + MLT1F LTR MaLR 1 94 -448 2437 86 0 0 chr6 1321283 1321587 -181093655 + AluSg SINE Alu 1 304 -6 730 214 330 15 chr6 1321587 1321861 -181093381 + MLT1F LTR MaLR 94 542 0 217 219 0 0 chr6 1321868 1321909 -181093333 + (CA)n Simple_repeat Simple_repeat 2 42 0 2993 224 122 22 chr6 1323047 1324076 -181091166 + L1M4 LINE L1 3909 5040 -1106 5752 119 7 8 chr6 1324076 1325671 -181089571 - L1PA13 LINE L1 0 6163 4549 218 125 25 0 chr6 1327388 1327428 -181087814 + T-rich Low_complexity Low_complexity 3 43 0 1663 128 132 0 chr6 1327597 1327863 -181087379 - AluSq SINE Alu -11 302 2 2162 115 0 10 chr6 1328282 1328594 -181086648 - AluSc SINE Alu 0 309 1 2154 172 13 0 chr6 1329450 1329828 -181085414 + MLT1B LTR MaLR 1 383 -7 195 69 0 0 chr6 1331243 1331272 -181083970 + (TTTTTG)n Simple_repeat Simple_repeat 2 30 0 240 273 0 0 chr6 1332043 1332098 -181083144 + (CA)n Simple_repeat Simple_repeat 2 56 0 318 23 23 0 chr6 1332371 1332414 -181082828 + AluY SINE Alu 1 44 -256 2508 81 3 0 chr6 1332414 1332723 -181082519 + AluY SINE Alu 1 310 -1 1894 135 17 14 chr6 1332948 1333244 -181081998 + AluSx SINE Alu 1 297 -15 365 219 14 0 chr6 1333244 1333317 -181081925 + Tigger7 DNA MER2_type 1 74 -265 14670 125 20 6 chr6 1333326 1335519 -181079723 + Tigger1 DNA MER2_type 2 2227 -191 1182 82 44 0 chr6 1335775 1335960 -181079282 - AluY SINE Alu 0 307 116 883 180 28 28 chr6 1335965 1336143 -181079099 + Tigger1 DNA MER2_type 2241 2418 0 1424 114 0 82 chr6 1336358 1336613 -181078629 + Tigger7 DNA MER2_type 2246 2479 -8 398 300 23 8 chr6 1336878 1337008 -181078234 - MIR3 SINE MIR -40 168 37 320 318 227 14 chr6 1337011 1337653 -181077589 - L3 LINE CR1 -1 1576 798 739 254 28 19 chr6 1337688 1337902 -181077340 + L1MA9 LINE L1 6087 6300 0 397 304 108 19 chr6 1338131 1338289 -181076953 - L3 LINE CR1 -1072 505 334 393 100 0 0 chr6 1338516 1338566 -181076676 + AluJ/FLAM SINE Alu 10 59 -243 228 356 7 52 chr6 1339719 1339854 -181075388 + MIR SINE MIR 20 148 -114 1778 166 14 14 chr6 1339986 1340275 -181074967 + AluJo SINE Alu 4 292 -20 2049 187 62 2 chr6 1341506 1341929 -181073313 + L1MB3 LINE L1 5736 6183 0 1638 160 71 11 chr6 1341942 1342223 -181073019 + AluJo SINE Alu 1 298 -14 235 274 137 74 chr6 1343261 1343320 -181071922 + L2 LINE L2 2967 3021 -251 2072 127 0 48 chr6 1343320 1343636 -181071606 + AluJo SINE Alu 1 301 -11 235 274 137 74 chr6 1343636 1343846 -181071396 + L2 LINE L2 3021 3253 -19 1256 217 75 70 chr6 1345340 1345777 -181069465 - MER63C DNA MER1_type 0 1556 258 1838 141 62 3 chr6 1347194 1347500 -181067742 - MER2 DNA MER2_type 0 345 22 2683 145 121 64 chr6 1347500 1348081 -181067161 + LTR18B LTR ERVL 1 614 0 3591 118 30 4 chr6 1348277 1348837 -181066405 + L1MA4A LINE L1 5717 6291 -12 3798 177 8 28 chr6 1349911 1350669 -181064573 + L1MB3 LINE L1 5434 6176 -7 299 305 28 71 chr6 1350813 1350954 -181064288 + L2 LINE L2 3134 3268 -4 237 387 13 0 chr6 1351255 1351410 -181063832 - L2 LINE L2 -2493 821 665 685 176 58 88 chr6 1351515 1351564 -181063678 - MER3 DNA MER1_type -8 201 152 653 225 8 0 chr6 1351564 1351693 -181063549 + FLAM_A SINE Alu 1 130 -3 685 176 58 88 chr6 1351693 1351848 -181063394 - MER3 DNA MER1_type -57 152 3 712 30 20 20 chr6 1352154 1352255 -181062987 + L1PA13 LINE L1 6063 6163 0 1124 189 7 88 chr6 1352503 1352799 -181062443 + MLT1A1 LTR MaLR 44 315 -50 365 309 132 7 chr6 1352871 1353023 -181062219 + MER5B DNA MER1_type 3 173 -5 273 322 132 0 chr6 1353573 1353725 -181061517 - MIR3 SINE MIR -7 201 30 378 239 43 15 chr6 1353919 1354051 -181061191 - MIR SINE MIR -61 147 24 1200 204 109 18 chr6 1355264 1355593 -181059649 + MLT1A1 LTR MaLR 7 365 0 198 103 0 0 chr6 1355648 1355677 -181059565 + (TGAA)n Simple_repeat Simple_repeat 1 29 0 2153 200 85 14 chr6 1355745 1356251 -181058991 - MER67A LTR ERV1 -1 542 1 29 70 0 0 chr6 1357722 1357779 -181057463 + AT_rich Low_complexity Low_complexity 1 57 0 962 237 74 18 chr6 1358146 1358554 -181056688 + MLT1J LTR MaLR 1 511 0 297 164 66 0 chr6 1360106 1360167 -181055075 - MIR SINE MIR -72 190 126 240 174 148 61 chr6 1361391 1361506 -181053736 - MER112 DNA MER1_type -91 169 45 259 248 53 71 chr6 1361661 1361774 -181053468 + MIR SINE MIR 80 190 -72 1683 184 125 3 chr6 1361914 1362267 -181052975 + MSTD LTR MaLR 1 396 0 904 309 58 42 chr6 1363055 1363515 -181051727 - L1ME1 LINE L1 -310 5856 5391 665 275 39 5 chr6 1363579 1363786 -181051456 - MIR SINE MIR -26 236 23 252 265 153 24 chr6 1364527 1364697 -181050545 + MIR SINE MIR 34 225 -37 207 335 67 12 chr6 1365375 1365539 -181049703 - MIR SINE MIR -62 200 28 437 349 0 0 chr6 1366359 1366511 -181048731 - MIR3 SINE MIR -10 198 47 200 333 0 0 chr6 1366569 1366623 -181048619 + (CA)n Simple_repeat Simple_repeat 1 54 0 315 232 0 0 chr6 1366649 1366731 -181048511 + (CATA)n Simple_repeat Simple_repeat 4 85 0 253 69 0 103 chr6 1366735 1366793 -181048449 - MER4-int LTR ERV1 -5436 1162 1111 522 241 0 0 chr6 1366800 1366945 -181048297 + (CATA)n Simple_repeat Simple_repeat 1 145 0 288 0 0 0 chr6 1368362 1368394 -181046848 + (CA)n Simple_repeat Simple_repeat 2 33 0 204 303 40 0 chr6 1368699 1368775 -181046467 - MIR SINE MIR -118 144 66 3611 148 5 45 chr6 1368776 1369882 -181045360 + L1M2 LINE L1 4729 5799 -501 301 125 0 0 chr6 1369909 1369957 -181045285 - L1M1 LINE L1 -471 5829 5782 226 282 48 8 chr6 1370644 1370768 -181044474 + LTR16C LTR ERVL 363 491 0 910 199 62 93 chr6 1372295 1372682 -181042560 + L1MC5 LINE L1 7198 7572 -389 1466 321 30 38 chr6 1372708 1373603 -181041639 + L1MEc LINE L1 36 923 -5473 2427 103 0 0 chr6 1373603 1373913 -181041329 - AluSg SINE Alu 0 310 1 706 292 86 15 chr6 1373915 1374322 -181040920 + L1MEc LINE L1 1021 1456 -4940 240 232 37 12 chr6 1374327 1374409 -181040833 + (TA)n Simple_repeat Simple_repeat 1 84 0 760 249 29 24 chr6 1374414 1374623 -181040619 + L1ME1 LINE L1 5953 6162 -4 762 268 58 22 chr6 1374653 1374966 -181040276 + L1MC5 LINE L1 7603 7926 -35 431 245 46 33 chr6 1375162 1375313 -181039929 - MLT1J LTR MaLR -2 509 357 207 0 0 0 chr6 1375912 1375935 -181039307 + (A)n Simple_repeat Simple_repeat 1 23 0 216 0 0 0 chr6 1377057 1377081 -181038161 + (A)n Simple_repeat Simple_repeat 1 24 0 270 246 62 0 chr6 1377766 1377831 -181037411 + MER94 DNA DNA 1 69 -65 7902 164 29 21 chr6 1377901 1379185 -181036057 + L1PB4 LINE L1 3783 5055 -1101 1845 152 3 20 chr6 1379185 1379481 -181035761 - AluJo SINE Alu -21 291 1 7902 164 29 21 chr6 1379481 1380356 -181034886 + L1PB4 LINE L1 5055 5962 -194 2260 51 0 116 chr6 1380356 1380691 -181034551 - AluY SINE Alu -15 296 1 7902 164 29 21 chr6 1380691 1380887 -181034355 + L1PB4 LINE L1 5962 6155 -1 27 0 0 0 chr6 1380887 1380914 -181034328 + AT_rich Low_complexity Low_complexity 1 27 0 244 289 133 43 chr6 1381378 1381539 -181033703 + L1MC4a LINE L1 5823 5968 -1840 2141 105 67 64 chr6 1381539 1381928 -181033314 + MLT1B LTR MaLR 1 390 0 244 289 133 43 chr6 1381928 1382067 -181033175 + L1MC4a LINE L1 5968 6150 -1658 786 202 0 0 chr6 1382070 1382199 -181033043 + FLAM_A SINE Alu 1 129 -4 1408 221 120 14 chr6 1382271 1382628 -181032614 + MSTD LTR MaLR 2 396 0 222 37 0 0 chr6 1382844 1382871 -181032371 + (CA)n Simple_repeat Simple_repeat 2 28 0 426 85 0 0 chr6 1383066 1383125 -181032117 + (TAGA)n Simple_repeat Simple_repeat 4 62 0 196 217 0 22 chr6 1383580 1383626 -181031616 - MIR SINE MIR -190 72 28 260 224 0 15 chr6 1385947 1386014 -181029228 - L2 LINE L2 -63 3250 3185 23 0 0 0 chr6 1389019 1389042 -181026200 + GC_rich Low_complexity Low_complexity 1 23 0 55 62 0 0 chr6 1389464 1389561 -181025681 + GC_rich Low_complexity Low_complexity 1 97 0 21 57 0 0 chr6 1389788 1389823 -181025419 + GC_rich Low_complexity Low_complexity 1 35 0 22 0 0 0 chr6 1389900 1389922 -181025320 + GC_rich Low_complexity Low_complexity 1 22 0 24 0 0 0 chr6 1390576 1390600 -181024642 + AT_rich Low_complexity Low_complexity 1 24 0 27 0 0 0 chr6 1390749 1390776 -181024466 + AT_rich Low_complexity Low_complexity 1 27 0 190 288 0 17 chr6 1394107 1394166 -181021076 - MIR SINE MIR -131 77 20 1080 67 8 0 chr6 1394542 1394676 -181020566 + AluSp SINE Alu 1 135 -178 1461 109 5 0 chr6 1394676 1394878 -181020364 + AluSp SINE Alu 1 203 -110 458 67 0 0 chr6 1394882 1394942 -181020300 + AluSp SINE Alu 73 132 -181 1424 119 5 0 chr6 1394944 1395146 -181020096 + AluSp SINE Alu 1 203 -110 458 67 0 0 chr6 1395150 1395210 -181020032 + AluSp SINE Alu 73 132 -181 1039 67 7 7 chr6 1395212 1395347 -181019895 + AluSp SINE Alu 1 135 -178 1461 109 5 0 chr6 1395347 1395549 -181019693 + AluSp SINE Alu 1 203 -110 458 67 0 0 chr6 1395553 1395613 -181019629 + AluSp SINE Alu 73 132 -181 1434 119 5 0 chr6 1395615 1395817 -181019425 + AluSp SINE Alu 1 203 -110 458 67 0 0 chr6 1395821 1395881 -181019361 + AluSp SINE Alu 73 132 -181 1053 83 0 0 chr6 1395883 1396015 -181019227 + AluSp SINE Alu 1 132 -181 1484 104 5 0 chr6 1396017 1396219 -181019023 + AluSp SINE Alu 1 203 -110 458 67 0 0 chr6 1396223 1396283 -181018959 + AluSp SINE Alu 73 132 -181 1055 83 0 0 chr6 1396285 1396417 -181018825 + AluSp SINE Alu 1 132 -181 2363 87 10 0 chr6 1396419 1396728 -181018514 + AluSp SINE Alu 1 312 -1 1557 163 3 48 chr6 1398492 1398781 -181016461 + AluJo SINE Alu 29 304 -8 498 238 163 13 chr6 1399644 1399887 -181015355 + L1ME1 LINE L1 5887 6159 -7 316 222 14 14 chr6 1401848 1401920 -181013322 - Tigger5 DNA MER2_type -1 2322 2251 * 386 164 0 0 chr6 1401889 1401944 -181013298 - Tigger5 DNA MER2_type -2268 55 1 1025 96 0 0 chr6 1402786 1402922 -181012320 - AluSg/x SINE Alu -1 311 176 299 143 0 0 chr6 1402994 1403043 -181012199 + L1MA8 LINE L1 6116 6164 -127 410 321 139 9 chr6 1403187 1403511 -181011731 - LTR16C LTR ERVL -39 452 87 367 223 57 76 chr6 1403628 1403785 -181011457 + MER63A DNA MER1_type 55 208 -2 1113 227 32 4 chr6 1403958 1404209 -181011033 + MIR SINE MIR 5 262 0 5897 141 20 15 chr6 1404495 1405493 -181009749 - L1MA8 LINE L1 -25 6266 5264 2818 49 0 0 chr6 1405529 1405855 -181009387 - LTR17 LTR ERV1 -454 326 1 4743 50 2 2 chr6 1405856 1406414 -181008828 - HERV17 LTR ERV1 -1 8625 8068 * 5669 62 3 1 chr6 1406405 1407097 -181008145 - HERV17 LTR ERV1 -3304 5322 4630 210 105 0 0 chr6 1407136 1407174 -181008068 + (TA)n Simple_repeat Simple_repeat 1 38 0 2032 135 0 30 chr6 1407650 1407953 -181007289 + AluSq SINE Alu 1 294 -19 2338 105 0 0 chr6 1408327 1408623 -181006619 - AluSg SINE Alu -14 296 1 1125 283 83 38 chr6 1409102 1409657 -181005585 + L1MC4a LINE L1 5298 5877 -1931 340 304 0 36 chr6 1409952 1410064 -181005178 + GA-rich Low_complexity Low_complexity 1 108 0 195 279 16 0 chr6 1411659 1411720 -181003522 - MIR3 SINE MIR -37 171 110 327 364 114 13 chr6 1412305 1412533 -181002709 + L3 LINE CR1 342 592 -985 687 237 46 98 chr6 1412585 1412857 -181002385 + L2 LINE L2 3006 3260 -53 2321 107 3 0 chr6 1412857 1413165 -181002077 + AluSx SINE Alu 1 309 -3 687 237 46 98 chr6 1413165 1413217 -181002025 + L2 LINE L2 3260 3313 0 741 296 35 43 chr6 1413231 1413576 -181001666 + L3 LINE CR1 682 1023 -554 342 251 97 58 chr6 1413623 1413770 -181001472 + L1MC4a LINE L1 5665 5824 -1984 1802 161 10 20 chr6 1413770 1414074 -181001168 + AluJb SINE Alu 1 301 -11 342 251 97 58 chr6 1414074 1414133 -181001109 + L1MC4a LINE L1 5824 5879 -1929 244 314 35 0 chr6 1414205 1414291 -181000951 + MER5A DNA MER1_type 18 106 -83 637 164 49 16 chr6 1414355 1414477 -181000765 - L1MB4 LINE L1 -3 6177 6052 227 357 143 9 chr6 1414578 1414690 -181000552 - L2 LINE L2 0 3272 3146 228 200 0 0 chr6 1414753 1414793 -181000449 + L1MB3 LINE L1 5551 5590 -722 2197 176 51 7 chr6 1414893 1415307 -180999935 + L1MA9 LINE L1 5832 6263 -49 1198 186 19 27 chr6 1416849 1417107 -180998135 + L1MCa LINE L1 6 261 -6165 * 4039 183 65 26 chr6 1417101 1418141 -180997101 + L1MCa LINE L1 775 1773 -4653 1495 185 26 15 chr6 1418141 1418411 -180996831 - AluJb SINE Alu -37 275 3 4039 183 65 26 chr6 1418411 1419526 -180995716 + L1MCa LINE L1 1773 3110 -3316 3378 225 5 16 chr6 1419513 1420308 -180994934 + L1MCa LINE L1 4145 4930 -1496 * 2476 138 14 32 chr6 1420368 1420761 -180994481 + L1MB3 LINE L1 5748 6134 -49 1584 186 0 38 chr6 1420761 1421079 -180994163 + AluJo SINE Alu 1 306 -6 2476 138 14 32 chr6 1421079 1421126 -180994116 + L1MB3 LINE L1 6134 6180 -3 426 20 0 0 chr6 1421698 1421749 -180993493 + (TAGA)n Simple_repeat Simple_repeat 1 51 0 202 284 75 0 chr6 1421784 1421851 -180993391 - MIR SINE MIR -104 158 87 2188 108 0 3 chr6 1422821 1423108 -180992134 + AluSg SINE Alu 1 286 -24 288 0 0 0 chr6 1423357 1423389 -180991853 + (CA)n Simple_repeat Simple_repeat 1 32 0 5879 245 28 29 chr6 1425061 1427331 -180987911 + L1MB7 LINE L1 16 2424 -4401 2615 97 8 0 chr6 1427331 1427683 -180987559 - THE1A LTR MaLR 0 355 1 4211 87 3 7 chr6 1427683 1428255 -180986987 - THE1A-int LTR MaLR 0 1580 1011 876 240 22 11 chr6 1428255 1428530 -180986712 + L1MB7 LINE L1 3542 3819 -2825 7567 219 14 5 chr6 1428566 1430745 -180984497 + L1 LINE L1 1610 3826 -2320 1220 162 8 7 chr6 1430735 1431036 -180984206 + L1MB7 LINE L1 4163 4432 -2212 * 257 174 0 0 chr6 1431043 1431089 -180984153 + GA-rich Low_complexity Low_complexity 3 48 0 454 126 0 23 chr6 1431209 1431296 -180983946 + (GGAA)n Simple_repeat Simple_repeat 2 86 0 1073 116 6 0 chr6 1431320 1431493 -180983749 + (GGGAA)n Simple_repeat Simple_repeat 1 174 0 3801 168 55 42 chr6 1431493 1432082 -180983160 + L1MB7 LINE L1 5699 6279 -403 2344 85 0 26 chr6 1432082 1432388 -180982854 + AluSx SINE Alu 1 298 -14 2057 120 53 0 chr6 1432398 1432682 -180982560 + AluSx SINE Alu 1 299 -13 3801 168 55 42 chr6 1432682 1432919 -180982323 + L1MB7 LINE L1 6287 6547 -135 2440 99 0 0 chr6 1432919 1433231 -180982011 + AluSp SINE Alu 1 312 -1 3801 168 55 42 chr6 1433231 1433282 -180981960 + L1MB7 LINE L1 6547 6596 -86 1337 168 50 23 chr6 1433282 1433544 -180981698 + Tigger2a DNA MER2_type 1 269 -165 482 201 54 0 chr6 1433547 1434361 -180980881 + (TA)n Simple_repeat Simple_repeat 1 857 0 309 146 0 0 chr6 1434385 1434440 -180980802 + L1MB8 LINE L1 6112 6166 -12 394 313 84 39 chr6 1434443 1434881 -180980361 - L1MC/D LINE L1 -2096 5712 5255 207 273 273 14 chr6 1435004 1435147 -180980095 + L2 LINE L2 1313 1492 -1822 5142 194 71 44 chr6 1435410 1435477 -180979765 - Charlie1 DNA MER1_type 0 2761 2697 1982 113 76 0 chr6 1435477 1435752 -180979490 + AluSx SINE Alu 3 298 -14 5142 194 71 44 chr6 1435752 1436456 -180978786 - Charlie1 DNA MER1_type -64 2697 2014 1240 218 58 14 chr6 1436456 1436749 -180978493 - AluJo SINE Alu -6 306 1 5142 194 71 44 chr6 1436749 1437418 -180977824 - Charlie1 DNA MER1_type -747 2014 1280 3783 60 2 2 chr6 1437418 1437888 -180977354 + L1PA5 LINE L1 5685 6154 0 836 165 38 0 chr6 1437901 1438034 -180977208 + AluSq/x SINE Alu 1 138 -174 4364 226 53 30 chr6 1438047 1439263 -180975979 - Charlie1 DNA MER1_type -1513 1248 6 2152 168 13 3 chr6 1440182 1440568 -180974674 - MLT1B LTR MaLR 0 390 1 305 308 0 19 chr6 1440619 1440723 -180974519 + L2 LINE L2 3170 3271 -1 22 0 0 0 chr6 1441512 1441534 -180973708 + AT_rich Low_complexity Low_complexity 1 22 0 1614 192 7 16 chr6 1442513 1442820 -180972422 + AluJo SINE Alu 7 310 -2 1766 176 20 3 chr6 1443396 1443702 -180971540 - AluJb SINE Alu -1 311 1 282 242 0 0 chr6 1445235 1445297 -180969945 + L2 LINE L2 3250 3311 -2 2298 116 51 25 chr6 1445345 1445700 -180969542 - THE1B LTR MaLR 0 364 1 765 247 0 6 chr6 1445731 1445889 -180969353 + FRAM SINE Alu 1 156 -20 247 288 76 47 chr6 1446054 1446290 -180968952 + L1ME LINE L1 3931 4173 -1973 518 228 39 0 chr6 1446344 1446471 -180968771 + MER103 DNA DNA 35 166 0 342 361 46 16 chr6 1446612 1446806 -180968436 + MIR SINE MIR 14 213 -49 424 278 231 4 chr6 1446821 1447094 -180968148 + L1ME LINE L1 5412 5746 -375 376 236 57 57 chr6 1447381 1447521 -180967721 - L1M4 LINE L1 -2892 3254 3115 559 322 17 6 chr6 1447556 1447736 -180967506 + LTR67 LTR ERVL 45 226 -331 311 301 28 57 chr6 1447844 1448020 -180967222 + LTR67 LTR ERVL 387 557 0 384 296 67 62 chr6 1448023 1448459 -180966783 - L1M4 LINE L1 -3034 3112 2675 387 331 18 6 chr6 1448469 1448632 -180966610 + MER5A DNA MER1_type 1 165 -24 265 352 88 33 chr6 1448674 1448856 -180966386 - L3b LINE CR1 -61 1522 1331 578 291 34 6 chr6 1449282 1449461 -180965781 + MLT1L LTR MaLR 431 614 -1 232 346 79 0 chr6 1449551 1449678 -180965564 - L3b LINE CR1 -343 1240 1104 836 256 106 47 chr6 1450086 1450493 -180964749 + L2 LINE L2 2883 3313 0 26 104 0 0 chr6 1451260 1451356 -180963886 + AT_rich Low_complexity Low_complexity 1 96 0 404 191 114 15 chr6 1451449 1451580 -180963662 + ORSL DNA AcHobo 1 144 -131 2213 71 7 0 chr6 1452822 1453139 -180962103 - AluSg SINE Alu 0 320 2 24 32 0 0 chr6 1453931 1453962 -180961280 + GC_rich Low_complexity Low_complexity 1 31 0 740 268 38 0 chr6 1454734 1454917 -180960325 - MIR SINE MIR -8 254 65 292 286 62 34 chr6 1456702 1456880 -180958362 + L1MC5 LINE L1 7749 7931 -30 23 33 0 0 chr6 1457558 1457588 -180957654 + GC_rich Low_complexity Low_complexity 1 30 0 319 259 0 0 chr6 1457657 1457742 -180957500 + G-rich Low_complexity Low_complexity 3 87 0 381 280 77 28 chr6 1461889 1462032 -180953210 + MIR SINE MIR 5 154 -108 315 0 0 0 chr6 1462955 1462990 -180952252 + (CA)n Simple_repeat Simple_repeat 1 35 0 239 173 19 0 chr6 1464318 1464370 -180950872 + CT-rich Low_complexity Low_complexity 2 54 0 189 0 0 0 chr6 1465567 1465588 -180949654 + (CCA)n Simple_repeat Simple_repeat 3 23 0 29 60 0 0 chr6 1465641 1465691 -180949551 + GC_rich Low_complexity Low_complexity 1 50 0 387 0 0 0 chr6 1467259 1467302 -180947940 + (CA)n Simple_repeat Simple_repeat 1 43 0 1521 134 5 0 chr6 1472163 1472387 -180942855 - AluJo SINE Alu 0 312 88 860 197 26 57 chr6 1473194 1473387 -180941855 - MER5A DNA MER1_type 0 189 3 444 227 20 0 chr6 1473904 1474054 -180941188 + GA-rich Low_complexity Low_complexity 2 154 0 347 222 8 0 chr6 1474087 1474204 -180941038 + GA-rich Low_complexity Low_complexity 2 119 0 223 226 0 36 chr6 1474235 1474319 -180940923 + GA-rich Low_complexity Low_complexity 3 83 0 23 0 0 0 chr6 1474795 1474818 -180940424 + AT_rich Low_complexity Low_complexity 1 23 0 1921 213 12 5 chr6 1475739 1476167 -180939075 + L1MA7 LINE L1 5371 5801 -490 409 200 27 0 chr6 1476170 1476245 -180938997 - Charlie3 DNA MER1_type 0 2712 2636 2057 177 58 33 chr6 1476256 1476741 -180938501 + L1MA7 LINE L1 5795 6291 0 768 179 0 0 chr6 1477492 1477807 -180937435 + (CA)n Simple_repeat Simple_repeat 1 315 0 713 171 0 11 chr6 1477854 1478035 -180937207 + (CA)n Simple_repeat Simple_repeat 2 180 0 588 218 0 0 chr6 1478077 1478437 -180936805 + (CA)n Simple_repeat Simple_repeat 1 360 0 263 321 0 21 chr6 1478444 1478584 -180936658 + (CATA)n Simple_repeat Simple_repeat 2 138 0 496 212 6 6 chr6 1478588 1478767 -180936475 + (CA)n Simple_repeat Simple_repeat 1 179 0 1719 169 67 9 chr6 1479614 1479957 -180935285 - MLT1B LTR MaLR -8 382 20 2288 108 0 0 chr6 1480826 1481121 -180934121 + AluSx SINE Alu 1 295 -17 2256 74 7 17 chr6 1483346 1483645 -180931597 + AluY SINE Alu 1 296 -15 196 267 15 126 chr6 1485378 1485471 -180929771 - MIR SINE MIR -51 211 135 2350 64 4 0 chr6 1485471 1485791 -180929451 + AluY SINE Alu 1 321 0 196 267 15 126 chr6 1485791 1485831 -180929411 - MIR SINE MIR -127 135 92 859 171 56 42 chr6 1486026 1486242 -180929000 + MER20 DNA MER1_type 1 219 0 1851 148 0 48 chr6 1486301 1486612 -180928630 + AluJb SINE Alu 1 296 -16 21 0 0 0 chr6 1486612 1486633 -180928609 + AT_rich Low_complexity Low_complexity 1 21 0 1981 151 3 7 chr6 1486644 1486942 -180928300 + AluJo SINE Alu 1 297 -15 462 264 85 0 chr6 1487988 1488117 -180927125 - Charlie8 DNA MER1_type -2273 144 5 294 333 67 9 chr6 1490197 1490302 -180924940 + MIR3 SINE MIR 95 205 -3 536 287 96 57 chr6 1490606 1490815 -180924427 - MIR SINE MIR -31 231 15 828 136 8 15 chr6 1491469 1491601 -180923641 + AluSq/x SINE Alu 1 131 -181 280 275 22 11 chr6 1491803 1491894 -180923348 - MIR SINE MIR -122 140 49 225 0 0 0 chr6 1492617 1492642 -180922600 + (TG)n Simple_repeat Simple_repeat 2 26 0 404 129 14 14 chr6 1492659 1492729 -180922513 - FLAM SINE Alu -19 124 55 2201 126 3 0 chr6 1492770 1493080 -180922162 - AluSx SINE Alu -1 311 1 730 135 23 23 chr6 1493089 1493222 -180922020 - FLAM_C SINE Alu 0 133 1 618 284 12 0 chr6 1493749 1493918 -180921324 - MER58A DNA MER1_type -9 215 45 191 200 0 100 chr6 1494116 1494166 -180921076 - MIR SINE MIR -2 260 216 720 194 58 13 chr6 1494196 1494351 -180920891 + FRAM SINE Alu 1 161 -15 366 269 112 30 chr6 1494407 1494541 -180920701 - MIR SINE MIR -96 166 22 299 315 112 12 chr6 1494562 1494732 -180920510 + MIR SINE MIR 43 228 -34 1645 148 33 23 chr6 1494799 1495104 -180920138 + MER44D DNA MER2_type 32 609 0 4028 184 81 12 chr6 1495120 1496785 -180918457 - L1MB8 LINE L1 -54 6124 4346 23 0 0 0 chr6 1496785 1496808 -180918434 + AT_rich Low_complexity Low_complexity 1 23 0 454 260 71 63 chr6 1496814 1497068 -180918174 - L1M4 LINE L1 -1616 4530 4275 21 36 0 0 chr6 1497117 1497145 -180918097 + AT_rich Low_complexity Low_complexity 1 28 0 197 231 0 58 chr6 1497241 1497293 -180917949 - L2 LINE L2 0 3313 3265 * 287 234 0 0 chr6 1497270 1497338 -180917904 + MIR SINE MIR 24 91 -117 621 256 106 0 chr6 1497343 1497523 -180917719 + MIR SINE MIR 64 262 0 257 271 158 55 chr6 1497535 1497933 -180917309 - L2 LINE L2 -56 3257 2819 1468 167 23 20 chr6 1498054 1498354 -180916888 - L1MA5 LINE L1 -19 6281 5981 260 271 35 0 chr6 1498428 1498513 -180916729 - MLT1H1 LTR MaLR -4 551 464 258 318 37 9 chr6 1498701 1498808 -180916434 - MLT1H LTR MaLR -337 212 103 822 256 56 16 chr6 1499432 1499682 -180915560 + MIR SINE MIR 2 261 -1 1227 120 69 0 chr6 1499682 1499898 -180915344 + Tigger4(Zombi) DNA MER2_type 1 231 -2500 1776 89 44 173 chr6 1499900 1500106 -180915136 + Tigger4(Zombi) DNA MER2_type 2333 2457 -274 2095 142 0 0 chr6 1500106 1500417 -180914825 - AluSx SINE Alu -1 311 1 1776 89 44 173 chr6 1500417 1500639 -180914603 + Tigger4(Zombi) DNA MER2_type 2457 2706 -25 2244 110 3 3 chr6 1502244 1502545 -180912697 - AluSq SINE Alu -12 301 1 1877 159 3 16 chr6 1502562 1502877 -180912365 + AluJb SINE Alu 1 311 -1 1021 181 0 0 chr6 1503260 1503437 -180911805 - AluJ SINE Alu -16 296 120 43294 32 3 1 chr6 1503439 1509575 -180905667 - L1PA3 LINE L1 -8 6147 1 748 187 0 15 chr6 1509581 1509715 -180905527 - AluJ SINE Alu -170 132 1 244 296 51 0 chr6 1509855 1509953 -180905289 + MIR SINE MIR 105 207 -55 2771 199 65 21 chr6 1510240 1510328 -180904914 + L1MB3 LINE L1 5495 5578 -605 2242 112 3 0 chr6 1510328 1510622 -180904620 + AluSx SINE Alu 1 295 -17 2771 199 65 21 chr6 1510622 1511191 -180904051 + L1MB3 LINE L1 5578 6181 -2 875 129 0 30 chr6 1512120 1512252 -180902990 - AluJ SINE Alu -174 128 1 220 53 53 0 chr6 1512915 1512953 -180902289 + C-rich Low_complexity Low_complexity 141 180 0 492 270 263 16 chr6 1512955 1513533 -180901709 + L2 LINE L2 1928 2648 -666 191 254 0 16 chr6 1513929 1513992 -180901250 + L2 LINE L2 3198 3259 -54 254 157 14 57 chr6 1514106 1514176 -180901066 + L1ME1 LINE L1 5363 5426 -740 375 157 36 0 chr6 1514176 1514259 -180900983 + L1MB3 LINE L1 6096 6181 -2 1660 248 22 72 chr6 1514274 1514705 -180900537 + L1ME1 LINE L1 5410 5798 -368 1908 144 53 0 chr6 1514705 1514989 -180900253 + AluSx SINE Alu 1 299 -13 1660 248 22 72 chr6 1514989 1515227 -180900015 + L1ME1 LINE L1 5798 6046 -120 549 253 6 77 chr6 1515393 1515509 -180899733 + MER45A DNA AcHobo 1 102 -1479 2237 96 0 0 chr6 1515509 1515824 -180899418 - AluSg SINE Alu 0 315 1 549 253 6 77 chr6 1515824 1515888 -180899354 + MER45A DNA AcHobo 102 169 -9 628 253 135 47 chr6 1516408 1516705 -180898537 + MER2 DNA MER2_type 2 324 -21 698 131 57 0 chr6 1516774 1516896 -180898346 + LOR1a LTR ERV1 1 129 -368 * 1467 142 80 24 chr6 1516894 1516963 -180898279 + LOR1b LTR ERV1 158 222 -239 2224 131 56 8 chr6 1516963 1517321 -180897921 - THE1C LTR MaLR 0 375 1 1467 142 80 24 chr6 1517321 1517539 -180897703 + LOR1b LTR ERV1 222 461 0 257 213 227 0 chr6 1517576 1517651 -180897591 - MER5A DNA MER1_type -89 100 9 226 296 45 45 chr6 1517712 1517800 -180897442 + MIR SINE MIR 44 131 -131 428 248 67 0 chr6 1517900 1518005 -180897237 - MIR SINE MIR -98 164 53 1824 145 0 4 chr6 1518017 1518286 -180896956 - AluJb SINE Alu -13 299 32 369 222 118 30 chr6 1518500 1518635 -180896607 - HAL1b LINE L1 -1 1347 1201 21 36 0 0 chr6 1518797 1518825 -180896417 + AT_rich Low_complexity Low_complexity 1 28 0 411 329 66 56 chr6 1518845 1519149 -180896093 - L1ME LINE L1 -542 5579 5273 1999 104 26 0 chr6 1519200 1519469 -180895773 + AluSx SINE Alu 30 305 -7 245 318 15 8 chr6 1519553 1519685 -180895557 - L1ME LINE L1 -1071 5075 4943 867 251 77 40 chr6 1519776 1520155 -180895087 - L1ME1 LINE L1 -15 6151 5759 1687 206 113 53 chr6 1520155 1520679 -180894563 + LTR60 LTR ERV1 1 555 -31 930 265 69 57 chr6 1520746 1521222 -180894020 - L1ME1 LINE L1 -419 5765 5284 329 328 36 34 chr6 1521250 1521607 -180893635 - L1ME LINE L1 -1299 4847 4490 3696 109 17 67 chr6 1521970 1522073 -180893169 - L1PB3 LINE L1 -23 6131 6024 1991 158 0 3 chr6 1522073 1522376 -180892866 - AluJb SINE Alu -10 302 1 3696 109 17 67 chr6 1522376 1522478 -180892764 - L1PB3 LINE L1 -130 6024 5624 598 262 60 84 chr6 1522478 1522660 -180892582 - L1MC2 LINE L1 -391 5953 5768 2738 32 0 13 chr6 1522660 1522975 -180892267 - AluY SINE Alu 0 311 1 598 262 60 84 chr6 1522975 1523304 -180891938 - L1MC2 LINE L1 -576 5768 5454 496 237 132 7 chr6 1523749 1523901 -180891341 - MLT1J LTR MaLR -15 496 326 554 253 33 20 chr6 1523965 1524115 -180891127 - MLT1J LTR MaLR -352 159 8 496 248 97 7 chr6 1524371 1524516 -180890726 - MLT1I LTR MaLR -210 199 42 1445 204 32 3 chr6 1525132 1525441 -180889801 - LTR23 LTR ERV1 -3 434 117 1373 156 124 0 chr6 1525444 1525701 -180889541 + AluJb SINE Alu 12 300 -12 468 153 135 0 chr6 1525706 1525817 -180889425 - LTR23 LTR ERV1 -311 126 1 425 335 25 37 chr6 1525985 1526230 -180889012 - MLT1J1 LTR MaLR -13 433 192 1591 188 114 112 chr6 1526240 1526870 -180888372 - LTR8A LTR ERV1 -3 724 94 2770 131 66 31 chr6 1526870 1527406 -180887836 - LTR35 LTR ERV1 0 618 1 377 211 79 0 chr6 1527406 1527482 -180887760 - LTR8 LTR ERV1 -609 82 1 1247 143 52 13 chr6 1527503 1527733 -180887509 - MLT1B LTR MaLR -12 378 140 2921 188 20 5 chr6 1527735 1528321 -180886921 + LTR49 LTR ERV1 1 595 0 4288 148 60 65 chr6 1528323 1529569 -180885673 + LTR49-int LTR ERV1 1 1470 -4476 707 143 21 43 chr6 1529571 1529711 -180885531 + FLAM_C SINE Alu 2 138 -5 2145 97 0 3 chr6 1529743 1530032 -180885210 - AluSx SINE Alu -24 288 1 282 306 14 0 chr6 1530111 1530183 -180885059 + tRNA-Glu-GAG tRNA tRNA 3 75 0 3870 199 31 44 chr6 1530183 1531065 -180884177 + MER57B-int LTR ERV1 1563 2432 -3899 1472 110 18 9 chr6 1531074 1531293 -180883949 - pTR5 LTR ERV1 -2046 392 172 317 169 73 83 chr6 1531298 1531394 -180883848 - LTR30 LTR ERV1 -77 702 544 4913 121 28 24 chr6 1531399 1532357 -180882885 - pTR5 LTR ERV1 -418 2020 743 1086 156 142 14 chr6 1532354 1532566 -180882676 + MER57B-int LTR ERV1 2436 2674 -3657 * 767 206 0 0 chr6 1532579 1532705 -180882537 + AluJ SINE Alu 2 127 -185 310 208 54 92 chr6 1532719 1532849 -180882393 + L1MCa LINE L1 1941 2065 -4361 302 124 72 10 chr6 1532849 1532946 -180882296 + (TA)n Simple_repeat Simple_repeat 1 103 0 872 187 24 0 chr6 1532950 1533116 -180882126 + AluJ SINE Alu 131 300 -12 6017 157 28 84 chr6 1533117 1534553 -180880689 + MER57B-int LTR ERV1 2666 4020 -2311 1962 117 36 23 chr6 1534553 1534860 -180880382 - L1PA15 LINE L1 -1 6164 5854 6017 157 28 84 chr6 1534860 1534895 -180880347 + MER57B-int LTR ERV1 4020 4055 -2276 13056 120 28 18 chr6 1534902 1535770 -180879472 + MER57B-int LTR ERV1 4210 5068 -1263 2067 121 3 0 chr6 1535770 1536068 -180879174 - AluSx SINE Alu -13 299 1 13056 120 28 18 chr6 1536068 1536547 -180878695 + MER57B-int LTR ERV1 5068 5541 -790 2870 138 5 5 chr6 1536547 1536981 -180878261 + MER57B LTR ERV1 1 434 0 13056 120 28 18 chr6 1536981 1537570 -180877672 + MER57B-int LTR ERV1 5541 6172 -159 2156 111 0 3 chr6 1537570 1537868 -180877374 + AluSq SINE Alu 1 297 -16 13056 120 28 18 chr6 1537868 1538030 -180877212 + MER57B-int LTR ERV1 6172 6331 0 2435 140 44 2 chr6 1538030 1538438 -180876804 + LTR49 LTR ERV1 1 425 -170 1005 123 0 0 chr6 1538442 1538588 -180876654 + AluSg/x SINE Alu 162 307 -5 700 174 112 12 chr6 1538588 1538749 -180876493 + LTR49 LTR ERV1 419 595 0 775 153 0 60 chr6 1538749 1538899 -180876343 - MLT1B LTR MaLR -249 141 1 2326 61 7 0 chr6 1539339 1539634 -180875608 + AluY SINE Alu 1 297 -14 2262 157 130 46 chr6 1540220 1540501 -180874741 - LTR49 LTR ERV1 0 595 339 1648 146 66 10 chr6 1540501 1540789 -180874453 + AluSx SINE Alu 1 304 -8 2262 157 130 46 chr6 1540789 1541054 -180874188 - LTR49 LTR ERV1 -256 339 3 4559 128 51 69 chr6 1541266 1541623 -180873619 - MER4D LTR ERV1 0 903 541 1945 139 0 0 chr6 1541623 1541918 -180873324 + AluJb SINE Alu 1 295 -17 4559 128 51 69 chr6 1541918 1542157 -180873085 - MER4D LTR ERV1 -362 541 299 2230 104 0 0 chr6 1542157 1542454 -180872788 - AluSq SINE Alu -16 297 1 4559 128 51 69 chr6 1542454 1542775 -180872467 - MER4D LTR ERV1 -604 299 1 1708 185 21 108 chr6 1542885 1543427 -180871815 - MER4A LTR ERV1 -3 695 161 2225 89 0 0 chr6 1543427 1543719 -180871523 - AluSq SINE Alu -12 301 10 1708 185 21 108 chr6 1543719 1543868 -180871374 - MER4A LTR ERV1 -537 161 1 296 288 27 51 chr6 1544127 1544351 -180870891 - L1MC4a LINE L1 -349 5825 5689 384 309 88 34 chr6 1545770 1545888 -180869354 - MIR SINE MIR 0 262 127 1949 217 65 26 chr6 1545888 1546423 -180868819 + LTR38 LTR ERV1 1 556 0 384 309 88 34 chr6 1546423 1546508 -180868734 - MIR SINE MIR -135 127 48 1050 153 5 16 chr6 1547301 1547491 -180867751 + L1MB3 LINE L1 5976 6163 -20 877 108 38 25 chr6 1547500 1548002 -180867240 + (TAGA)n Simple_repeat Simple_repeat 1 508 0 3212 147 31 7 chr6 1548526 1549111 -180866131 - L1MB3 LINE L1 0 6183 5585 3442 193 70 91 chr6 1549583 1550300 -180864942 + L1MD2 LINE L1 5336 6067 -292 4453 55 2 4 chr6 1550300 1550848 -180864394 + L1PA8 LINE L1 5622 6168 -4 198 0 0 0 chr6 1550851 1550873 -180864369 + (CA)n Simple_repeat Simple_repeat 1 22 0 3442 193 70 91 chr6 1550873 1551187 -180864055 + L1MD2 LINE L1 6069 6349 -10 226 271 34 0 chr6 1551511 1551570 -180863672 + (CATG)n Simple_repeat Simple_repeat 2 62 0 214 320 19 0 chr6 1601776 1601879 -180813363 + L2 LINE L2 2571 2675 -639 3989 170 33 15 chr6 1601889 1602549 -180812693 - L1MB3 LINE L1 -10 6173 5496 2442 51 0 0 chr6 1602549 1602844 -180812398 - AluY SINE Alu -14 297 3 3989 170 33 15 chr6 1602844 1602937 -180812305 - L1MB3 LINE L1 -687 5496 5406 893 243 195 52 chr6 1603409 1603890 -180811352 + L2 LINE L2 2745 3310 -3 2704 191 98 3 chr6 1605359 1605960 -180809282 - L1MB3 LINE L1 -1984 4162 3505 231 339 0 0 chr6 1606216 1606278 -180808964 + L2 LINE L2 3193 3254 -18 369 0 0 0 chr6 1606464 1606505 -180808737 + (CA)n Simple_repeat Simple_repeat 2 42 0 2003 85 43 3 chr6 1606507 1606789 -180808453 - AluSx SINE Alu -19 293 1 388 274 8 8 chr6 1606961 1607078 -180808164 - MIR SINE MIR -69 139 23 327 274 0 14 chr6 1607551 1607624 -180807618 + L2 LINE L2 3242 3313 0 1769 159 0 0 chr6 1608162 1608438 -180806804 + AluJb SINE Alu 1 276 -36 1139 120 98 0 chr6 1608542 1608726 -180806516 - MER2 DNA MER2_type -135 210 9 347 340 146 14 chr6 1608797 1609091 -180806151 - L1M4 LINE L1 -1303 4843 4511 201 39 0 0 chr6 1609125 1609151 -180806091 + (TTGG)n Simple_repeat Simple_repeat 2 27 0 505 347 61 33 chr6 1609220 1609580 -180805662 - L1M4 LINE L1 -1839 4307 3938 1990 216 48 44 chr6 1609584 1610265 -180804977 + L1MC5 LINE L1 7184 7867 -94 1092 157 63 0 chr6 1610818 1611009 -180804233 - L1M3 LINE L1 -698 5482 5280 196 263 232 21 chr6 1611012 1611206 -180804036 + L2 LINE L2 2694 2928 -386 193 258 226 11 chr6 1611384 1611477 -180803765 + L2 LINE L2 3201 3313 0 285 226 16 16 chr6 1611531 1611593 -180803649 - MIR SINE MIR -8 254 193 234 170 85 0 chr6 1612311 1612358 -180802884 + L1MB3 LINE L1 5779 5829 -342 411 138 0 0 chr6 1612359 1612417 -180802825 + 7SLRNA srpRNA srpRNA 210 267 -53 186 310 126 0 chr6 1612700 1612787 -180802455 + L2 LINE L2 3123 3220 -52 2317 201 74 48 chr6 1612872 1613454 -180801788 + LTR31 LTR ERV1 1 597 -22 1613 101 0 0 chr6 1613908 1614125 -180801117 - AluSc SINE Alu -92 217 1 4012 180 43 10 chr6 1614135 1614919 -180800323 - L1MB3 LINE L1 0 6183 5374 2326 213 29 26 chr6 1614937 1615520 -180799722 - L1M3 LINE L1 -983 5163 4579 769 88 0 0 chr6 1615621 1615723 -180799519 + AluSg/x SINE Alu 200 301 -9 299 83 0 0 chr6 1615723 1615771 -180799471 + L1MB4 LINE L1 6133 6180 0 265 262 74 49 chr6 1616194 1616316 -180798926 + MIR3 SINE MIR 61 185 -23 1372 167 47 7 chr6 1618199 1618475 -180796767 + L1MB3 LINE L1 5887 6173 -10 1493 208 22 44 chr6 1619472 1619833 -180795409 - MLT1A1 LTR MaLR -12 353 1 1053 157 25 10 chr6 1619837 1620035 -180795207 + L1MB3 LINE L1 5938 6138 -45 2102 118 0 10 chr6 1620036 1620342 -180794900 + AluSx SINE Alu 1 303 -9 711 245 61 25 chr6 1620519 1620715 -180794527 - L1MC/D LINE L1 -2100 5708 5506 721 226 0 7 chr6 1620717 1620863 -180794379 - FAM SINE Alu -10 175 31 400 278 43 62 chr6 1620933 1621095 -180794147 - L1MC/D LINE L1 -2386 5422 5264 282 236 112 34 chr6 1621585 1621674 -180793568 + MIR SINE MIR 117 212 -50 1374 167 44 104 chr6 1621820 1622138 -180793104 + AluJo SINE Alu 3 301 -1 2290 94 7 0 chr6 1622144 1622453 -180792789 + AluY SINE Alu 1 311 0 622 176 0 15 chr6 1622750 1622886 -180792356 + CT-rich Low_complexity Low_complexity 2 135 0 782 243 0 0 chr6 1622903 1623055 -180792187 - AluJb SINE Alu -4 308 157 812 127 0 8 chr6 1623064 1623190 -180792052 + AluJo SINE Alu 27 151 -161 328 176 0 0 chr6 1623190 1623241 -180792001 - Alu SINE Alu -257 51 1 686 253 143 13 chr6 1623488 1623725 -180791517 - Charlie2 DNA MER1_type -2270 592 325 1093 170 38 0 chr6 1623761 1623973 -180791269 + L1MB3 LINE L1 5956 6175 -8 659 192 8 31 chr6 1624231 1624391 -180790851 - AluSg/x SINE Alu 0 314 158 334 345 79 52 chr6 1624662 1625182 -180790060 - L2 LINE L2 -201 3071 2522 328 315 69 42 chr6 1625182 1625398 -180789844 + MIR SINE MIR 3 224 -38 247 302 108 16 chr6 1625491 1625620 -180789622 - L2 LINE L2 -939 2375 2235 260 305 12 0 chr6 1626822 1626904 -180788338 - MER94 DNA DNA -4 130 48 1044 241 55 107 chr6 1626919 1627418 -180787824 + LTR45B LTR ERV1 3 512 -13 903 150 0 24 chr6 1627916 1628083 -180787159 + AluJo SINE Alu 135 297 -15 419 232 76 67 chr6 1628102 1628341 -180786901 - MLT1J1 LTR MaLR -64 386 141 466 259 77 18 chr6 1628573 1628743 -180786499 + L2 LINE L2 2145 2324 -990 186 43 0 0 chr6 1629002 1629025 -180786217 + (A)n Simple_repeat Simple_repeat 1 23 0 1306 26 0 0 chr6 1631468 1631620 -180783622 + L1PA4 LINE L1 6002 6153 -2 957 242 76 103 chr6 1632001 1632893 -180782349 - L1ME3A LINE L1 -99 6071 5190 1182 207 21 13 chr6 1632893 1633130 -180782112 + MER8 DNA MER2_type 1 239 0 957 242 76 103 chr6 1633130 1633342 -180781900 - L1ME3A LINE L1 -980 5190 4974 1494 206 92 36 chr6 1633350 1633796 -180781446 - L1ME2 LINE L1 -23 6141 5671 249 280 0 0 chr6 1635140 1635222 -180780020 - L1ME3A LINE L1 -2335 3811 3730 32 0 0 0 chr6 1635852 1635884 -180779358 + AT_rich Low_complexity Low_complexity 1 32 0 768 147 47 8 chr6 1635891 1636020 -180779222 + AluJb SINE Alu 1 134 -178 244 119 79 8 chr6 1636020 1636034 -180779208 + (TA)n Simple_repeat Simple_repeat 2 14 -122 234 0 0 0 chr6 1636034 1636060 -180779182 + (CA)n Simple_repeat Simple_repeat 2 27 0 244 119 79 8 chr6 1636060 1636171 -180779071 + (TA)n Simple_repeat Simple_repeat 14 136 0 955 159 12 6 chr6 1636180 1636343 -180778899 + AluSg/x SINE Alu 129 292 -20 976 183 61 0 chr6 1636383 1636580 -180778662 - MER2 DNA MER2_type -136 209 1 883 264 21 74 chr6 1639693 1639802 -180775440 - L2 LINE L2 -1405 1909 1796 1714 130 0 60 chr6 1639802 1640117 -180775125 + AluSx SINE Alu 1 296 -16 883 264 21 74 chr6 1640117 1640428 -180774814 - L2 LINE L2 -1518 1796 1511 284 254 0 0 chr6 1640510 1640573 -180774669 - L3 LINE CR1 -170 1407 1345 185 386 65 11 chr6 1640639 1640823 -180774419 + L2 LINE L2 2824 3017 -255 240 35 0 0 chr6 1641761 1641790 -180773452 + (A)n Simple_repeat Simple_repeat 1 29 0 190 279 177 0 chr6 1642595 1642674 -180772568 - MIR3 SINE MIR -1 207 115 211 294 149 52 chr6 1642778 1642972 -180772270 + L3 LINE CR1 1227 1439 -138 405 232 45 9 chr6 1643153 1643265 -180771977 - L1MB7 LINE L1 -31 6153 6038 362 268 106 8 chr6 1645294 1645417 -180769825 - MIR SINE MIR -46 216 82 285 274 29 39 chr6 1646052 1646154 -180769088 - MIR SINE MIR -44 218 118 340 150 0 0 chr6 1647010 1647070 -180768172 + L1MC2 LINE L1 6272 6331 -13 342 164 33 0 chr6 1648424 1648485 -180766757 - MADE1 DNA Mariner 0 80 18 2158 112 0 0 chr6 1648491 1648786 -180766456 + AluSc SINE Alu 1 295 -14 287 70 23 0 chr6 1648789 1648832 -180766410 - MADE1 DNA Mariner -34 46 3 2253 90 0 16 chr6 1650512 1650824 -180764418 - AluSx SINE Alu -5 307 1 189 83 0 0 chr6 1651347 1651371 -180763871 + L3 LINE CR1 440 463 -1114 1952 126 11 0 chr6 1651720 1652026 -180763216 - AluSx SINE Alu 0 309 1 836 211 11 17 chr6 1652329 1652509 -180762733 - L1M4 LINE L1 -1945 4201 4023 2287 74 0 7 chr6 1652509 1652806 -180762436 + AluY SINE Alu 1 295 -16 1144 88 0 2 chr6 1652806 1652959 -180762283 + L1PA5 LINE L1 3294 3445 -2701 9309 49 4 22 chr6 1652959 1654896 -180760346 + L1PA5 LINE L1 4228 6152 -2 1144 88 0 2 chr6 1654896 1654914 -180760328 + L1PA5 LINE L1 3445 3462 -2684 870 202 56 20 chr6 1655032 1655230 -180760012 + L1MCa LINE L1 312 516 -5910 829 262 90 11 chr6 1655222 1655501 -180759741 - L1MCa LINE L1 -6105 321 21 * 180 158 0 0 chr6 1656871 1656909 -180758333 + A-rich Low_complexity Low_complexity 5 42 0 335 230 9 0 chr6 1657991 1658104 -180757138 + (CA)n Simple_repeat Simple_repeat 2 115 0 1496 171 4 4 chr6 1658678 1658935 -180756307 - AluJo SINE Alu -55 257 1 1438 35 0 0 chr6 1659875 1660045 -180755197 - AluY SINE Alu -141 170 1 222 385 77 0 chr6 1660665 1660821 -180754421 + MIR SINE MIR 17 184 -78 1667 232 113 18 chr6 1660845 1661448 -180753794 + L1ME1 LINE L1 5502 6161 -5 1740 108 134 11 chr6 1661738 1662006 -180753236 + AluSx SINE Alu 1 301 -1 21 0 0 0 chr6 1662107 1662128 -180753114 + AT_rich Low_complexity Low_complexity 1 21 0 184 326 97 35 chr6 1663678 1663822 -180751420 - L3b LINE CR1 -55 1528 1376 219 269 134 74 chr6 1663945 1664094 -180751148 - MIR SINE MIR -21 187 30 322 311 16 16 chr6 1664158 1664280 -180750962 - L2 LINE L2 -32 3281 3160 287 331 86 41 chr6 1664681 1664926 -180750316 + L2 LINE L2 2840 3095 -177 197 43 0 0 chr6 1665059 1665082 -180750160 + (T)n Simple_repeat Simple_repeat 1 23 0 339 333 215 4 chr6 1665368 1665596 -180749646 + L3 LINE CR1 829 1104 -473 474 333 77 48 chr6 1665658 1665931 -180749311 - L2 LINE L2 -5 3267 2987 691 223 22 119 chr6 1666135 1666404 -180748838 - MIR SINE MIR -2 260 18 1047 166 0 0 chr6 1666705 1666987 -180748255 + (TGGA)n Simple_repeat Simple_repeat 1 282 0 220 189 0 0 chr6 1667004 1667041 -180748201 + GA-rich Low_complexity Low_complexity 1 37 0 335 296 151 20 chr6 1667041 1667193 -180748049 - MIR3 SINE MIR -7 201 30 691 297 62 68 chr6 1667232 1667616 -180747626 - MLT1I LTR MaLR -3 406 25 270 317 110 24 chr6 1668098 1668262 -180746980 - MLT1I LTR MaLR 0 409 232 2728 112 60 0 chr6 1668551 1668953 -180746289 - MSTA LTR MaLR -2 426 1 569 276 35 0 chr6 1669041 1669211 -180746031 + MIR SINE MIR 87 262 0 32 26 0 0 chr6 1669555 1669594 -180745648 + AT_rich Low_complexity Low_complexity 1 39 0 1398 156 30 50 chr6 1669594 1669758 -180745484 - AluJo SINE Alu -16 296 139 1722 87 9 0 chr6 1669758 1669988 -180745254 - AluSp SINE Alu -11 302 71 1398 156 30 50 chr6 1669988 1670125 -180745117 - AluJo SINE Alu -173 139 1 240 257 29 0 chr6 1670676 1670746 -180744496 + LTR67 LTR ERVL 431 502 -55 626 268 168 9 chr6 1670878 1671277 -180743965 + Charlie2 DNA MER1_type 74 589 -2273 915 221 53 90 chr6 1671320 1671520 -180743722 + Charlie2 DNA MER1_type 2030 2236 -626 1515 162 49 8 chr6 1671520 1671785 -180743457 + AluJo SINE Alu 1 276 -36 915 221 53 90 chr6 1671785 1672072 -180743170 + Charlie2 DNA MER1_type 2236 2499 -363 1267 205 52 46 chr6 1672072 1672399 -180742843 + L1MB8 LINE L1 5849 6177 -1 1564 171 3 24 chr6 1672408 1672700 -180742542 + AluJo SINE Alu 1 286 -26 204 40 0 0 chr6 1672709 1672734 -180742508 + (CA)n Simple_repeat Simple_repeat 2 26 0 455 254 30 60 chr6 1672734 1672959 -180742283 + Charlie2 DNA MER1_type 2502 2721 -141 1600 273 133 4 chr6 1672960 1673455 -180741787 + MER69 DNA AcHobo 1 559 -667 226 242 152 38 chr6 1673425 1673557 -180741685 + MER69 DNA AcHobo 2254 2400 -126 * 359 134 20 174 chr6 1673549 1673615 -180741627 + Charlie2 DNA MER1_type 2736 2768 -94 1649 114 0 0 chr6 1673615 1673843 -180741399 + AluSc SINE Alu 65 292 -17 359 134 20 174 chr6 1673843 1673925 -180741317 + Charlie2 DNA MER1_type 2768 2861 -1 1794 285 88 51 chr6 1674037 1674363 -180740879 + HERVL LTR ERVL 2050 2362 -3402 2279 93 3 0 chr6 1674363 1674673 -180740569 + AluY SINE Alu 1 311 0 1794 285 88 51 chr6 1674673 1675171 -180740071 + HERVL LTR ERVL 2362 2905 -2859 360 43 0 0 chr6 1675283 1675329 -180739913 + (TG)n Simple_repeat Simple_repeat 1 46 0 1406 149 29 58 chr6 1675391 1675700 -180739542 + AluJo SINE Alu 1 300 -12 271 231 103 57 chr6 1675694 1675788 -180739454 + HERVL LTR ERVL 3132 3229 -2535 391 328 54 17 chr6 1675902 1676148 -180739094 + HERVL LTR ERVL 5111 5369 -221 442 313 20 7 chr6 1677000 1677150 -180738092 + LTR67 LTR ERVL 385 536 -21 207 172 0 69 chr6 1677554 1677612 -180737630 + CT-rich Low_complexity Low_complexity 3 56 0 2242 79 3 7 chr6 1678249 1678553 -180736689 + AluSp SINE Alu 1 303 -10 339 44 0 0 chr6 1679661 1679706 -180735536 + (TTTG)n Simple_repeat Simple_repeat 4 48 0 804 166 14 21 chr6 1679706 1679851 -180735391 - FRAM SINE Alu -32 144 1 308 299 39 26 chr6 1679893 1680047 -180735195 - MIR SINE MIR -19 243 88 2164 97 10 0 chr6 1680324 1680623 -180734619 + AluSx SINE Alu 1 302 -10 30 27 0 0 chr6 1680623 1680660 -180734582 + AT_rich Low_complexity Low_complexity 1 37 0 204 40 0 0 chr6 1680900 1680925 -180734317 + (CAAA)n Simple_repeat Simple_repeat 1 25 0 1987 151 143 5 chr6 1681064 1681436 -180733806 + MSTA LTR MaLR 6 428 0 21 36 0 0 chr6 1681455 1681483 -180733759 + AT_rich Low_complexity Low_complexity 1 28 0 1866 151 0 0 chr6 1681483 1681768 -180733474 - AluSx SINE Alu -27 285 1 1481 229 65 26 chr6 1681771 1682338 -180732904 - L1MC5 LINE L1 -58 7903 7315 334 305 124 29 chr6 1682484 1682668 -180732574 + MIR SINE MIR 10 208 -54 789 204 56 45 chr6 1682691 1683081 -180732161 - MSTD LTR MaLR -52 344 1 971 185 49 19 chr6 1683710 1683915 -180731327 + MIR SINE MIR 24 234 -28 245 325 112 48 chr6 1684140 1684346 -180730896 + L2 LINE L2 2945 3163 -109 411 301 30 63 chr6 1684660 1684962 -180730280 - L1ME3A LINE L1 -232 5938 5647 275 211 35 0 chr6 1684986 1685043 -180730199 + L2 LINE L2 3214 3272 0 268 269 86 107 chr6 1685696 1685893 -180729349 - MLT1L LTR MaLR -415 200 8 2370 69 3 28 chr6 1686819 1687138 -180728104 + AluY SINE Alu 1 311 0 1000 256 78 83 chr6 1687219 1688013 -180727229 + L1MEc LINE L1 827 1617 -4779 1601 166 29 16 chr6 1688013 1688321 -180726921 + AluJo SINE Alu 1 312 0 1000 256 78 83 chr6 1688321 1688497 -180726745 + L1MEc LINE L1 1617 1792 -4604 1398 208 46 8 chr6 1688558 1688909 -180726333 - L1M4 LINE L1 -1394 5563 5200 816 92 108 0 chr6 1688933 1689053 -180726189 + AluSq/x SINE Alu 1 133 -180 2167 113 3 0 chr6 1689078 1689380 -180725862 + AluSp SINE Alu 1 303 -10 6002 114 28 3 chr6 1689387 1689600 -180725642 - L1M1 LINE L1 -4099 3466 3260 1771 164 13 13 chr6 1689600 1689904 -180725338 - AluJb SINE Alu -6 306 3 6002 114 28 3 chr6 1689904 1690648 -180724594 - L1M1 LINE L1 -4305 3260 2485 5478 239 38 32 chr6 1690653 1692186 -180723056 - L1M4 LINE L1 -2451 4506 3018 807 50 0 0 chr6 1692186 1692287 -180722955 + L1PA5 LINE L1 6053 6153 -1 5478 239 38 32 chr6 1692287 1692833 -180722409 - L1M4 LINE L1 -3939 3018 2476 7653 223 52 20 chr6 1693013 1695298 -180719944 - L1M4 LINE L1 -4550 2409 9 784 239 117 4 chr6 1695454 1695823 -180719419 + MLT1G LTR MaLR 144 589 -1 815 218 88 10 chr6 1696455 1696648 -180718594 - Charlie8 DNA MER1_type -2209 208 1 244 292 0 0 chr6 1701919 1701991 -180713251 + L3 LINE CR1 1080 1151 -426 254 309 95 16 chr6 1704271 1704523 -180710719 + L1ME LINE L1 5615 5886 -284 2047 124 7 7 chr6 1704540 1704839 -180710403 + AluSq SINE Alu 1 299 -14 906 330 67 53 chr6 1705074 1705223 -180710019 + L1MC4a LINE L1 4410 4556 -1590 2247 93 0 3 chr6 1705223 1705525 -180709717 + AluSx SINE Alu 1 301 -11 906 330 67 53 chr6 1705525 1706142 -180709100 + L1MC4a LINE L1 4556 5186 -960 340 162 20 40 chr6 1706159 1706258 -180708984 + L1MC5 LINE L1 7636 7732 -229 216 214 0 0 chr6 1706274 1706330 -180708912 + (CA)n Simple_repeat Simple_repeat 1 56 0 1445 277 97 11 chr6 1706448 1707113 -180708129 + L1MC4a LINE L1 5175 5398 -748 1779 138 13 16 chr6 1709231 1709543 -180705699 - AluJo SINE Alu -1 311 1 354 211 24 8 chr6 1709747 1710002 -180705240 + (TG)n Simple_repeat Simple_repeat 1 259 0 1996 138 0 0 chr6 1710907 1711203 -180704039 - AluSx SINE Alu -16 296 1 252 228 152 51 chr6 1711205 1711284 -180703958 - L2 LINE L2 -2 3270 3184 224 265 20 0 chr6 1711575 1711624 -180703618 + L2 LINE L2 3240 3289 -24 195 42 0 0 chr6 1711721 1711745 -180703497 + (ATTG)n Simple_repeat Simple_repeat 4 27 0 231 271 106 0 chr6 1712460 1712545 -180702697 - MER103 DNA DNA -58 108 15 1443 230 83 49 chr6 1713338 1713606 -180701636 - MER82 DNA MER2_type -203 450 160 1672 167 16 32 chr6 1713606 1713918 -180701324 + AluJo SINE Alu 1 307 -5 1443 230 83 49 chr6 1713918 1714080 -180701162 - MER82 DNA MER2_type -493 160 5 453 19 0 0 chr6 1714902 1714956 -180700286 + (CA)n Simple_repeat Simple_repeat 1 54 0 1720 181 48 0 chr6 1715012 1715343 -180699899 + L1PA16 LINE L1 5802 6148 -18 552 245 10 50 chr6 1715348 1715548 -180699694 + L1MC4 LINE L1 7472 7663 -379 231 114 0 0 chr6 1716413 1716448 -180698794 + (TG)n Simple_repeat Simple_repeat 1 35 0 252 312 54 48 chr6 1718206 1718392 -180696850 + Charlie2 DNA MER1_type 30 216 -2566 498 165 0 0 chr6 1719199 1719278 -180695964 + HY4 scRNA scRNA 5 83 -10 306 0 0 0 chr6 1723076 1723110 -180692132 + (CA)n Simple_repeat Simple_repeat 2 35 0 180 0 0 0 chr6 1723109 1723129 -180692113 + (TC)n Simple_repeat Simple_repeat 2 21 0 * 246 259 0 0 chr6 1723129 1723187 -180692055 + (TA)n Simple_repeat Simple_repeat 2 59 0 203 138 0 0 chr6 1725086 1725115 -180690127 + (CCTG)n Simple_repeat Simple_repeat 1 29 0 191 270 48 0 chr6 1725546 1725609 -180689633 + L2 LINE L2 3207 3272 0 399 268 108 13 chr6 1725616 1725773 -180689469 + MER104 DNA Tc2 2 173 -7 417 288 78 13 chr6 1725798 1725951 -180689291 + MIR SINE MIR 80 242 -20 48 32 0 0 chr6 1732265 1732327 -180682915 + GC_rich Low_complexity Low_complexity 1 62 0 42 20 0 0 chr6 1732570 1732619 -180682623 + GC_rich Low_complexity Low_complexity 1 49 0 252 119 0 75 chr6 1732903 1732981 -180682261 + (CCCGG)n Simple_repeat Simple_repeat 1 72 0 31 0 0 0 chr6 1733108 1733139 -180682103 + GC_rich Low_complexity Low_complexity 1 31 0 34 24 0 0 chr6 1733609 1733650 -180681592 + GC_rich Low_complexity Low_complexity 1 41 0 32 26 0 0 chr6 1733899 1733938 -180681304 + GC_rich Low_complexity Low_complexity 1 39 0 221 120 20 20 chr6 1734153 1734203 -180681039 + (CGG)n Simple_repeat Simple_repeat 2 51 0 25 0 0 0 chr6 1734269 1734294 -180680948 + GC_rich Low_complexity Low_complexity 1 25 0 216 0 0 0 chr6 1734368 1734392 -180680850 + (CGG)n Simple_repeat Simple_repeat 1 24 0 180 0 0 0 chr6 1734492 1734512 -180680730 + (CGG)n Simple_repeat Simple_repeat 3 22 0 23 0 0 0 chr6 1737121 1737144 -180678098 + GC_rich Low_complexity Low_complexity 1 23 0 220 220 20 0 chr6 1741279 1741329 -180673913 + GA-rich Low_complexity Low_complexity 5 55 0 254 327 13 0 chr6 1744985 1745141 -180670101 + (TG)n Simple_repeat Simple_repeat 1 158 0 261 312 13 0 chr6 1745780 1745857 -180669385 + L2 LINE L2 3236 3313 0 243 0 0 0 chr6 1747413 1747440 -180667802 + (T)n Simple_repeat Simple_repeat 1 27 0 257 232 50 99 chr6 1747786 1747967 -180667275 + MER112 DNA MER1_type 29 200 -60 255 229 0 0 chr6 1748269 1748330 -180666912 + GA-rich Low_complexity Low_complexity 4 64 0 206 152 0 22 chr6 1754220 1754266 -180660976 + CT-rich Low_complexity Low_complexity 2 46 0 811 253 69 30 chr6 1754865 1755169 -180660073 + L1ME2 LINE L1 5839 6154 -10 1861 171 3 10 chr6 1755180 1755478 -180659764 + AluJo SINE Alu 1 296 -16 189 282 175 10 chr6 1755551 1755654 -180659588 + MIR SINE MIR 100 219 -43 292 370 146 0 chr6 1755969 1756331 -180658911 - L2 LINE L2 -48 3265 2851 471 341 41 25 chr6 1757235 1757549 -180657693 - L2 LINE L2 -562 2752 2434 253 333 81 16 chr6 1760431 1760554 -180654688 - MIR SINE MIR -128 134 4 271 333 74 22 chr6 1761927 1762062 -180653180 - L2 LINE L2 -219 3053 2912 226 227 109 126 chr6 1762158 1762190 -180653052 + MIR SINE MIR 22 53 -209 1709 151 37 0 chr6 1762190 1762486 -180652756 + AluJb SINE Alu 1 306 0 226 227 109 126 chr6 1762486 1762571 -180652671 + MIR SINE MIR 53 138 -124 229 280 173 33 chr6 1763264 1763414 -180651828 - L2 LINE L2 -54 3259 3089 310 115 33 0 chr6 1764289 1764350 -180650892 + CT-rich Low_complexity Low_complexity 2 64 0 2242 104 0 25 chr6 1764736 1765053 -180650189 - AluSx SINE Alu -3 309 1 246 218 103 0 chr6 1766089 1766167 -180649075 + L1MA8 LINE L1 5961 6046 -245 877 236 46 4 chr6 1766177 1766414 -180648828 + L1MB8 LINE L1 5932 6178 0 322 268 57 81 chr6 1767406 1767515 -180647727 - MIR SINE MIR -55 153 46 2338 79 0 13 chr6 1767515 1767818 -180647424 - AluSg SINE Alu -11 299 1 322 268 57 81 chr6 1767818 1767831 -180647411 - MIR SINE MIR -162 46 34 273 304 161 0 chr6 1768499 1768611 -180646631 + L2 LINE L2 3177 3306 -7 1397 167 151 12 chr6 1769017 1769268 -180645974 - AluJo SINE Alu -16 286 1 183 350 30 10 chr6 1770377 1770477 -180644765 + L2 LINE L2 2940 3041 -231 331 228 53 61 chr6 1772600 1772714 -180642528 + MIR3 SINE MIR 78 190 -18 1905 143 3 19 chr6 1773158 1773465 -180641777 - AluSx SINE Alu -10 302 1 241 324 115 14 chr6 1774295 1774434 -180640808 + MIR SINE MIR 110 262 0 2353 76 0 3 chr6 1824853 1825142 -180590100 - AluY SINE Alu -23 288 1 949 164 12 6 chr6 1827932 1828097 -180587145 + MLT1D LTR MaLR 340 505 0 25 31 0 0 chr6 1828475 1828507 -180586735 + AT_rich Low_complexity Low_complexity 1 32 0 230 54 0 27 chr6 1829586 1829623 -180585619 + (TA)n Simple_repeat Simple_repeat 2 37 0 2230 98 0 7 chr6 1832887 1833068 -180582174 - AluY SINE Alu -8 303 123 180 0 0 0 chr6 1833068 1833088 -180582154 + (TAG)n Simple_repeat Simple_repeat 1 20 0 2230 98 0 7 chr6 1833088 1833211 -180582031 - AluY SINE Alu -188 123 1 413 291 0 10 chr6 1833233 1833336 -180581906 + L2 LINE L2 3156 3257 -15 771 243 37 28 chr6 1833341 1833555 -180581687 - MIR SINE MIR -9 253 38 2126 58 0 12 chr6 1834154 1834411 -180580831 - AluY SINE Alu -15 296 43 2285 84 7 7 chr6 1836260 1836556 -180578686 - AluSp SINE Alu -17 296 1 217 359 0 16 chr6 1836573 1836637 -180578605 - L2 LINE L2 -92 3180 3118 212 119 34 68 chr6 1837667 1837726 -180577516 + (TTAA)n Simple_repeat Simple_repeat 1 57 0 24 0 0 0 chr6 1839046 1839070 -180576172 + AT_rich Low_complexity Low_complexity 1 24 0 498 279 0 0 chr6 1839563 1839674 -180575568 - MER58C DNA MER1_type -2 213 103 201 245 0 20 chr6 1839674 1839723 -180575519 + CT-rich Low_complexity Low_complexity 3 50 0 199 47 0 70 chr6 1839771 1839814 -180575428 + (CAAAAA)n Simple_repeat Simple_repeat 2 41 0 931 209 138 12 chr6 1841031 1841284 -180573958 + HAL1 LINE L1 3 287 -2220 2904 264 129 52 chr6 1841366 1842870 -180572372 + HAL1 LINE L1 473 2133 -374 2401 81 0 3 chr6 1842870 1843178 -180572064 + AluSc SINE Alu 1 307 -2 2904 264 129 52 chr6 1843178 1843427 -180571815 + HAL1 LINE L1 2133 2361 -146 1593 139 9 118 chr6 1844359 1844690 -180570552 + AluSx SINE Alu 1 295 -17 487 329 50 25 chr6 1846083 1846366 -180568876 - L2 LINE L2 -13 3259 2970 219 245 19 0 chr6 1847141 1847194 -180568048 + GA-rich Low_complexity Low_complexity 1 54 0 937 106 17 11 chr6 1848312 1848666 -180566576 + (CA)n Simple_repeat Simple_repeat 1 356 0 966 109 14 16 chr6 1848684 1849042 -180566200 + (CA)n Simple_repeat Simple_repeat 1 357 0 339 244 11 0 chr6 1850047 1850137 -180565105 + MIR SINE MIR 53 143 -119 2457 84 0 0 chr6 1851099 1851396 -180563846 + AluSx SINE Alu 1 297 -15 421 158 49 0 chr6 1851760 1851842 -180563400 - Charlie5 DNA MER1_type -1366 1246 1161 2142 162 21 9 chr6 1851873 1852298 -180562944 - L1MA6 LINE L1 -6 6294 5865 2521 90 0 3 chr6 1852353 1852665 -180562577 + AluSx SINE Alu 1 311 -1 206 170 0 57 chr6 1852690 1852743 -180562499 + A-rich Low_complexity Low_complexity 1 50 0 2323 101 0 0 chr6 1852748 1853044 -180562198 - AluSg SINE Alu -14 296 1 258 367 35 6 chr6 1853549 1853718 -180561524 - MER5A DNA MER1_type 0 189 16 2339 38 42 7 chr6 1854096 1854385 -180560857 + AluY SINE Alu 1 299 -12 25 0 0 0 chr6 1854954 1854979 -180560263 + AT_rich Low_complexity Low_complexity 1 25 0 183 162 0 0 chr6 1855791 1855828 -180559414 + (CA)n Simple_repeat Simple_repeat 2 38 0 2346 85 0 0 chr6 1857514 1857824 -180557418 - AluSg SINE Alu 0 310 1 207 220 0 0 chr6 1858284 1858334 -180556908 + (CA)n Simple_repeat Simple_repeat 2 51 0 233 278 88 49 chr6 1859022 1859306 -180555936 - HAL1b LINE L1 -1036 312 18 692 176 101 14 chr6 1859409 1859557 -180555685 - MER58B DNA MER1_type 0 341 181 1976 134 13 22 chr6 1860130 1860443 -180554799 + AluSx SINE Alu 1 310 -2 1295 213 14 14 chr6 1860658 1860945 -180554297 - AluJo SINE Alu -15 297 11 30399 98 28 27 chr6 1861116 1862308 -180552934 + L1P3 LINE L1 11 1201 -5286 2184 115 0 0 chr6 1862308 1862616 -180552626 - AluSc SINE Alu 0 308 1 30399 98 28 27 chr6 1862616 1866996 -180548246 + L1P3 LINE L1 1201 5712 -775 591 249 173 76 chr6 1867023 1867090 -180548152 - MLT1H LTR MaLR 0 555 496 2290 95 0 26 chr6 1867090 1867396 -180547846 - AluSq SINE Alu -15 298 1 591 249 173 76 chr6 1867396 1867869 -180547373 - MLT1H LTR MaLR -59 496 1 1100 231 77 3 chr6 1868607 1868906 -180546336 - MER33 DNA MER1_type 0 324 4 241 171 0 0 chr6 1869335 1869376 -180545866 - MER5A DNA MER1_type -5 184 144 374 252 101 25 chr6 1869379 1869538 -180545704 - MER5A DNA MER1_type -18 171 1 195 277 77 0 chr6 1869543 1869608 -180545634 + MIR SINE MIR 23 92 -116 680 80 0 0 chr6 1869616 1869704 -180545538 + AluS SINE Alu 4 91 -221 1265 102 0 0 chr6 1869753 1869919 -180545323 - AluSg/x SINE Alu -18 294 129 451 314 6 13 chr6 1870084 1870240 -180545002 - MIR3 SINE MIR -12 196 42 255 192 20 91 chr6 1870392 1870491 -180544751 - L2 LINE L2 -12 3260 3169 236 252 158 31 chr6 1876397 1876524 -180538718 - MIR3 SINE MIR -63 145 3 1288 139 130 0 chr6 1879393 1879601 -180535641 + MER46A DNA MER2_type 1 235 -1 2001 115 3 73 chr6 1880520 1880850 -180534392 - AluSx SINE Alu -5 307 1 22 0 0 0 chr6 1881858 1881880 -180533362 + AT_rich Low_complexity Low_complexity 1 22 0 310 262 124 43 chr6 1882136 1882355 -180532887 + MIR SINE MIR 12 257 -5 255 261 159 11 chr6 1886160 1886248 -180528994 - MER91B DNA MER1_type 0 190 90 307 263 79 0 chr6 1886264 1886340 -180528902 - MER91B DNA MER1_type -61 129 48 180 375 58 10 chr6 1887206 1887230 -180528012 + MER5A DNA MER1_type 4 25 -164 1654 163 46 18 chr6 1887230 1887512 -180527730 + AluJo SINE Alu 1 290 -22 180 375 58 10 chr6 1887512 1887591 -180527651 + MER5A DNA MER1_type 25 112 -77 354 233 160 33 chr6 1891067 1891217 -180524025 + MIR SINE MIR 82 250 -12 271 337 51 10 chr6 1893574 1893672 -180521570 - MIR SINE MIR -13 249 148 1762 158 7 11 chr6 1893696 1893975 -180521267 + AluJb SINE Alu 1 278 -34 189 107 0 0 chr6 1893980 1894008 -180521234 + (GGAGA)n Simple_repeat Simple_repeat 2 29 0 199 359 136 56 chr6 1894110 1894308 -180520934 + L2 LINE L2 3019 3232 -40 1784 88 4 0 chr6 1895016 1895244 -180519998 + AluSg/x SINE Alu 83 311 -1 371 247 315 0 chr6 1896171 1896333 -180518909 - MLT1G LTR MaLR -24 566 354 208 280 112 0 chr6 1898794 1898901 -180516341 + MIR SINE MIR 36 154 -108 22 0 0 0 chr6 1899605 1899627 -180515615 + AT_rich Low_complexity Low_complexity 1 22 0 948 253 110 67 chr6 1899684 1900305 -180514937 - MER21B LTR ERV1 -154 709 57 1957 151 6 13 chr6 1900350 1900662 -180514580 - AluJb SINE Alu -2 310 1 194 330 39 50 chr6 1900808 1900987 -180514255 - L3 LINE CR1 -697 880 704 390 302 0 26 chr6 1901170 1901286 -180513956 - MIR SINE MIR -81 181 69 1953 183 103 19 chr6 1901647 1902057 -180513185 + MLT1D LTR MaLR 1 456 -49 1701 183 35 42 chr6 1902057 1902434 -180512808 - MLT1A2 LTR MaLR 0 374 1 1953 183 103 19 chr6 1902434 1902487 -180512755 + MLT1D LTR MaLR 456 503 -2 1739 272 119 53 chr6 1902647 1903850 -180511392 - HAL1 LINE L1 0 2507 1226 216 213 0 0 chr6 1903912 1903959 -180511283 + L2 LINE L2 2154 2200 -1114 1729 142 0 47 chr6 1905733 1906029 -180509213 + AluJb SINE Alu 6 287 -25 235 184 0 20 chr6 1906257 1906306 -180508936 + (TA)n Simple_repeat Simple_repeat 2 49 0 355 281 22 30 chr6 1907227 1907362 -180507880 + MER5A DNA MER1_type 51 184 -5 1849 161 7 0 chr6 1907830 1908122 -180507120 + MER1B DNA MER1_type 1 294 -45 665 261 22 17 chr6 1908392 1908572 -180506670 - MIR SINE MIR -38 224 44 423 0 0 0 chr6 1909062 1909109 -180506133 + (CA)n Simple_repeat Simple_repeat 1 47 0 22 0 0 0 chr6 1910791 1910813 -180504429 + AT_rich Low_complexity Low_complexity 1 22 0 282 320 8 23 chr6 1911078 1911206 -180504036 + MIR SINE MIR 48 173 -89 1756 115 3 89 chr6 1911258 1911562 -180503680 - AluSx SINE Alu -9 303 26 225 0 0 0 chr6 1914398 1914423 -180500819 + (TAAA)n Simple_repeat Simple_repeat 2 26 0 23 0 0 0 chr6 1916023 1916046 -180499196 + AT_rich Low_complexity Low_complexity 1 23 0 572 281 14 0 chr6 1916268 1916407 -180498835 + Charlie1 DNA MER1_type 1 141 -2620 1130 174 134 13 chr6 1916410 1916709 -180498533 + Charlie1 DNA MER1_type 2427 2761 0 801 185 0 0 chr6 1916823 1916953 -180498289 + FLAM_A SINE Alu 2 131 -2 357 109 0 0 chr6 1917264 1917319 -180497923 + (CA)n Simple_repeat Simple_repeat 2 56 0 1714 168 4 0 chr6 1917875 1918143 -180497099 - AluJo SINE Alu -20 292 24 307 261 43 0 chr6 1918308 1918377 -180496865 + L2 LINE L2 3146 3217 -55 1264 242 50 25 chr6 1918432 1918874 -180496368 + L1M4 LINE L1 4852 5304 -842 26 0 0 0 chr6 1919490 1919516 -180495726 + AT_rich Low_complexity Low_complexity 1 26 0 207 0 0 0 chr6 1919729 1919752 -180495490 + (TG)n Simple_repeat Simple_repeat 2 24 0 203 274 66 47 chr6 1920870 1920976 -180494266 - L2 LINE L2 -23 3290 3183 2100 120 38 0 chr6 1921115 1921407 -180493835 - AluSx SINE Alu -9 303 1 256 280 175 66 chr6 1922752 1923163 -180492079 - L2 LINE L2 -4 3309 2854 293 322 9 26 chr6 1923294 1923409 -180491833 + GA-rich Low_complexity Low_complexity 3 115 0 1498 172 32 36 chr6 1923765 1924073 -180491169 + AluJo SINE Alu 1 307 -5 21 57 0 0 chr6 1924075 1924110 -180491132 + AT_rich Low_complexity Low_complexity 1 35 0 21 36 0 0 chr6 1925506 1925534 -180489708 + AT_rich Low_complexity Low_complexity 1 28 0 190 304 18 0 chr6 1927008 1927064 -180488178 - L2 LINE L2 -4 3309 3253 227 79 26 0 chr6 1927933 1927971 -180487271 + (CA)n Simple_repeat Simple_repeat 2 40 0 2453 89 0 0 chr6 1929150 1929452 -180485790 + AluSq SINE Alu 1 302 -11 311 192 14 0 chr6 1929513 1929586 -180485656 + (TA)n Simple_repeat Simple_repeat 1 74 0 194 347 56 0 chr6 1929641 1929713 -180485529 + MIR SINE MIR 47 122 -140 234 136 0 0 chr6 1929859 1929903 -180485339 + (CA)n Simple_repeat Simple_repeat 1 44 0 2240 107 3 3 chr6 1930302 1930601 -180484641 + AluSq SINE Alu 1 299 -14 198 0 0 0 chr6 1930601 1930623 -180484619 + (TA)n Simple_repeat Simple_repeat 2 23 0 21 0 0 0 chr6 1930981 1931002 -180484240 + AT_rich Low_complexity Low_complexity 1 21 0 249 57 0 0 chr6 1932428 1932463 -180482779 + (T)n Simple_repeat Simple_repeat 1 35 0 355 303 128 38 chr6 1935412 1935637 -180479605 + MIR SINE MIR 15 262 0 284 325 41 16 chr6 1935705 1935828 -180479414 + L2 LINE L2 3174 3299 -14 2853 173 52 12 chr6 1936283 1936551 -180478691 - MER7C DNA MER2_type -2426 602 346 1936 145 0 22 chr6 1936551 1936862 -180478380 + AluSx SINE Alu 1 304 -8 2853 173 52 12 chr6 1936862 1937171 -180478071 - MER7C DNA MER2_type -2682 346 2 1407 201 24 21 chr6 1937609 1937897 -180477345 + AluJo SINE Alu 1 289 -23 420 20 0 0 chr6 1937903 1937952 -180477290 + (TG)n Simple_repeat Simple_repeat 2 50 0 197 231 0 15 chr6 1937959 1938024 -180477218 + (CATATA)n Simple_repeat Simple_repeat 2 65 0 4454 196 61 16 chr6 1938475 1939630 -180475612 + L1M4c LINE L1 546 1752 -4632 2218 148 45 28 chr6 1939646 1940072 -180475170 - Tigger2a DNA MER2_type -1 433 1 212 353 8 0 chr6 1940072 1940205 -180475037 + (TA)n Simple_repeat Simple_repeat 1 134 0 1530 197 3 19 chr6 1940253 1940563 -180474679 - AluJb SINE Alu -7 305 1 968 181 10 0 chr6 1940862 1941055 -180474187 - MER3 DNA MER1_type -3 206 12 745 171 101 0 chr6 1941074 1941232 -180474010 - MER20 DNA MER1_type 0 219 46 22 0 0 0 chr6 1942817 1942839 -180472403 + AT_rich Low_complexity Low_complexity 1 22 0 452 131 0 0 chr6 1942906 1942967 -180472275 + AluJo SINE Alu 10 70 -242 227 69 0 0 chr6 1942969 1942998 -180472244 - Alu SINE Alu -196 106 78 1349 144 5 14 chr6 1943004 1943212 -180472030 + AluJo SINE Alu 72 277 -35 207 0 0 0 chr6 1943951 1943974 -180471268 + (T)n Simple_repeat Simple_repeat 1 23 0 200 268 0 0 chr6 1944334 1944375 -180470867 + polypyrimidine Low_complexity Low_complexity 5 45 0 22 56 0 0 chr6 1944848 1944884 -180470358 + AT_rich Low_complexity Low_complexity 1 36 0 24 32 0 0 chr6 1945839 1945870 -180469372 + AT_rich Low_complexity Low_complexity 1 31 0 183 328 31 47 chr6 1945932 1946060 -180469182 - L2 LINE L2 -197 3116 2991 1902 88 74 14 chr6 1946663 1946991 -180468251 - AluY SINE Alu 0 311 1 233 200 50 17 chr6 1951145 1951205 -180464037 + L2 LINE L2 3249 3310 -3 320 332 119 20 chr6 1952845 1953047 -180462195 + L2 LINE L2 2827 3048 -224 384 238 109 32 chr6 1953364 1953552 -180461690 + MLT1L LTR MaLR 299 606 -9 1561 165 33 15 chr6 1953657 1953930 -180461312 + AluJb SINE Alu 1 278 -34 378 0 0 0 chr6 1953934 1953976 -180461266 + (TAAAA)n Simple_repeat Simple_repeat 3 44 0 1937 161 0 3 chr6 1954310 1954608 -180460634 + AluSx SINE Alu 1 297 -15 318 345 45 8 chr6 1954876 1955076 -180460166 - MIR SINE MIR -3 259 3 214 225 0 0 chr6 1956056 1956096 -180459146 - MIR SINE MIR -102 106 67 2187 126 21 12 chr6 1956413 1956747 -180458495 - MER1B DNA MER1_type 0 337 1 2100 149 0 9 chr6 1956902 1957217 -180458025 - AluJb SINE Alu 0 312 1 1644 161 30 0 chr6 1957906 1958173 -180457069 - AluJo SINE Alu -37 275 1 241 238 48 0 chr6 1958820 1958883 -180456359 - L2 LINE L2 -253 3060 2995 188 239 195 58 chr6 1959006 1959232 -180456010 + L2 LINE L2 2804 3060 -212 217 330 31 31 chr6 1959430 1959654 -180455588 - L2 LINE L2 -935 2379 2156 1045 169 13 58 chr6 1959706 1959931 -180455311 - MER20 DNA MER1_type -4 215 1 31 26 0 0 chr6 1962529 1962567 -180452675 + AT_rich Low_complexity Low_complexity 1 38 0 2022 101 24 0 chr6 1963536 1963823 -180451419 - AluSp SINE Alu -16 297 4 2751 16 0 0 chr6 1964061 1964365 -180450877 + AluY SINE Alu 1 304 -7 513 239 54 8 chr6 1965294 1965424 -180449818 + MER20 DNA MER1_type 2 137 -82 192 263 211 0 chr6 1970493 1970645 -180444597 + MIR3 SINE MIR 25 208 0 1211 231 35 19 chr6 1971084 1971456 -180443786 + L1ME1 LINE L1 5782 6159 -7 195 42 0 0 chr6 1972443 1972467 -180442775 + (A)n Simple_repeat Simple_repeat 1 24 0 27 49 0 0 chr6 1973099 1973140 -180442102 + AT_rich Low_complexity Low_complexity 1 41 0 198 103 0 0 chr6 1974305 1974334 -180440908 + (TG)n Simple_repeat Simple_repeat 2 30 0 24 32 0 0 chr6 1974705 1974736 -180440506 + AT_rich Low_complexity Low_complexity 1 31 0 205 156 0 0 chr6 1976446 1976478 -180438764 + GA-rich Low_complexity Low_complexity 3 34 0 2256 92 17 0 chr6 1978814 1979109 -180436133 - AluSg SINE Alu -10 300 1 21 57 0 0 chr6 1979684 1979719 -180435523 + AT_rich Low_complexity Low_complexity 1 35 0 189 275 63 106 chr6 1980045 1980187 -180435055 - L2 LINE L2 -1828 1486 1351 261 0 0 0 chr6 1981883 1981912 -180433330 + (CA)n Simple_repeat Simple_repeat 1 29 0 22 0 0 0 chr6 1982217 1982239 -180433003 + AT_rich Low_complexity Low_complexity 1 22 0 306 0 0 0 chr6 1986142 1986176 -180429066 + (CA)n Simple_repeat Simple_repeat 2 35 0 2014 123 36 0 chr6 1986568 1986870 -180428372 + AluSp SINE Alu 1 313 0 1336 84 0 0 chr6 1986928 1987095 -180428147 + AluSq SINE Alu 129 295 -18 181 263 88 44 chr6 1987389 1987503 -180427739 + MIR SINE MIR 90 208 -54 1979 155 7 7 chr6 1988182 1988492 -180426750 + AluJo SINE Alu 1 310 -2 2550 59 0 7 chr6 1988857 1989163 -180426079 + AluY SINE Alu 2 305 -6 249 309 83 71 chr6 1989746 1989914 -180425328 + L2 LINE L2 3101 3270 -2 25 65 0 0 chr6 1990006 1990052 -180425190 + AT_rich Low_complexity Low_complexity 1 46 0 1447 211 6 35 chr6 1990990 1991303 -180423939 + AluJo SINE Alu 1 304 -8 2067 115 35 0 chr6 1993945 1994232 -180421010 + AluSc SINE Alu 1 297 -12 22 35 0 0 chr6 1994606 1994635 -180420607 + AT_rich Low_complexity Low_complexity 1 29 0 21 36 0 0 chr6 1994814 1994842 -180420400 + AT_rich Low_complexity Low_complexity 1 28 0 21 100 0 0 chr6 1997425 1997495 -180417747 + AT_rich Low_complexity Low_complexity 1 70 0 469 223 218 40 chr6 1997764 1997966 -180417276 - MIR SINE MIR -12 250 13 246 306 137 8 chr6 1998003 1998127 -180417115 - MIR SINE MIR -76 186 47 1177 199 15 0 chr6 1998552 1998753 -180416489 + MER2 DNA MER2_type 1 204 -141 1081 158 19 98 chr6 1998753 1999042 -180416200 - AluJo SINE Alu 0 312 54 2144 123 44 27 chr6 1999044 1999411 -180415831 - THE1C LTR MaLR -2 373 1 2628 113 5 15 chr6 1999411 1999800 -180415442 - THE1C-int LTR MaLR 0 1580 1196 300 203 7 48 chr6 1999800 1999873 -180415369 - AluJ/FLAM SINE Alu -244 58 1 21 36 0 0 chr6 1999875 1999903 -180415339 + AT_rich Low_complexity Low_complexity 1 28 0 3655 181 87 28 chr6 2000449 2001511 -180413731 - L1MB7 LINE L1 -3 6181 5044 262 176 0 0 chr6 2001729 2001780 -180413462 - L1MB7 LINE L1 -1118 5028 4978 294 232 14 14 chr6 2001783 2001852 -180413390 - L1MB7 LINE L1 -1250 4896 4828 946 203 16 5 chr6 2002469 2002656 -180412586 + MER5A DNA MER1_type 1 189 0 2064 141 7 0 chr6 2003191 2003482 -180411760 - AluSx SINE Alu -19 293 1 2314 86 26 0 chr6 2004006 2004310 -180410932 - AluSx SINE Alu 0 312 1 21 57 0 0 chr6 2005266 2005301 -180409941 + AT_rich Low_complexity Low_complexity 1 35 0 791 256 20 0 chr6 2006247 2006446 -180408796 - MER3 DNA MER1_type -1 208 6 208 337 71 10 chr6 2006753 2006851 -180408391 - L2 LINE L2 -32 3240 3137 737 207 165 0 chr6 2006955 2007143 -180408099 - MER20 DNA MER1_type 0 219 1 188 279 93 31 chr6 2007744 2007873 -180407369 - L2 LINE L2 -798 2516 2380 1506 150 26 51 chr6 2007949 2008262 -180406980 - MLT1B LTR MaLR -85 305 1 190 243 229 0 chr6 2008302 2008372 -180406870 + MIR SINE MIR 16 101 -161 1037 179 16 0 chr6 2008446 2008636 -180406606 - L1MA4 LINE L1 -101 6199 6007 238 309 0 28 chr6 2008828 2009006 -180406236 + (CCCTA)n Simple_repeat Simple_repeat 2 174 0 229 300 100 0 chr6 2009148 2009218 -180406024 - MIR3 SINE MIR -14 194 118 356 349 50 15 chr6 2009617 2009815 -180405427 - L2 LINE L2 -4 3309 3105 230 241 0 17 chr6 2009912 2009970 -180405272 + CT-rich Low_complexity Low_complexity 1 57 0 344 241 13 0 chr6 2011356 2011435 -180403807 - L1ME3A LINE L1 -4 6166 6087 201 312 128 9 chr6 2011559 2011668 -180403574 + MIR3 SINE MIR 78 199 -9 238 306 97 45 chr6 2012563 2012697 -180402545 - L2 LINE L2 -1 3312 3172 209 280 50 30 chr6 2015865 2015965 -180399277 + MIR SINE MIR 20 121 -141 3038 184 38 6 chr6 2018656 2019189 -180396053 - MER44D DNA MER2_type 0 605 1 238 317 29 39 chr6 2019635 2019739 -180395503 + MIR3 SINE MIR 9 111 -97 871 174 76 76 chr6 2020780 2021055 -180394187 + MER33 DNA MER1_type 49 323 -1 218 329 14 0 chr6 2021369 2021442 -180393800 - MIR3 SINE MIR -54 154 81 2134 121 0 0 chr6 2022908 2023197 -180392045 + AluSx SINE Alu 1 289 -23 2825 16 0 0 chr6 2023924 2024234 -180391008 + AluYa5 SINE Alu 1 310 -1 267 54 0 0 chr6 2024945 2024982 -180390260 + (T)n Simple_repeat Simple_repeat 1 37 0 2249 99 0 34 chr6 2024999 2025321 -180389921 + AluY SINE Alu 1 311 0 192 257 176 0 chr6 2026732 2026806 -180388436 + L3 LINE CR1 1345 1431 -146 309 232 26 13 chr6 2027251 2027406 -180387836 + GA-rich Low_complexity Low_complexity 1 157 0 1737 183 6 10 chr6 2029289 2029601 -180385641 + AluJb SINE Alu 1 311 -1 313 264 104 48 chr6 2029915 2030040 -180385202 - L2 LINE L2 -8 3264 3133 2506 157 179 118 chr6 2033244 2033673 -180381569 + LTR28 LTR ERV1 1 403 -617 2247 118 53 34 chr6 2033673 2034030 -180381212 + THE1B LTR MaLR 1 364 0 2506 157 179 118 chr6 2034030 2034562 -180380680 + LTR28 LTR ERV1 403 1020 0 219 279 118 37 chr6 2034660 2034796 -180380446 + MIR3 SINE MIR 1 147 -61 186 258 106 15 chr6 2035445 2035511 -180379731 + L2 LINE L2 3237 3308 -5 507 93 40 0 chr6 2035717 2035792 -180379450 + AluY SINE Alu 216 293 -18 4504 127 49 39 chr6 2036529 2037306 -180377936 + LTR1 LTR ERV1 1 785 0 23 0 0 0 chr6 2038378 2038401 -180376841 + AT_rich Low_complexity Low_complexity 1 23 0 2255 114 0 0 chr6 2038909 2039208 -180376034 + AluSc SINE Alu 1 299 -10 2082 123 0 0 chr6 2039511 2039831 -180375411 + AluSx SINE Alu 1 320 0 251 313 71 0 chr6 2042673 2042772 -180372470 - L2 LINE L2 0 3313 3208 460 268 65 0 chr6 2043087 2043210 -180372032 - MIR SINE MIR -40 222 92 2537 57 0 3 chr6 2043359 2043659 -180371583 - AluY SINE Alu -9 302 4 4396 205 22 16 chr6 2043688 2045490 -180369752 - L1MB7 LINE L1 -10 6174 4362 266 286 13 13 chr6 2045991 2046068 -180369174 + MIR SINE MIR 62 138 -70 219 241 232 9 chr6 2046162 2046274 -180368968 + MIR SINE MIR 126 262 0 322 250 88 29 chr6 2046624 2046760 -180368482 + L1MEd LINE L1 2 145 -5974 1129 147 121 152 chr6 2047435 2047509 -180367733 + Tigger3(Golem) DNA MER2_type 5 80 -2948 2279 120 0 0 chr6 2047509 2047810 -180367432 + AluSx SINE Alu 1 301 -11 1129 147 121 152 chr6 2047810 2048090 -180367152 + Tigger3(Golem) DNA MER2_type 80 3028 0 1153 216 113 72 chr6 2048242 2048686 -180366556 - MLT1C LTR MaLR 0 467 6 815 120 45 53 chr6 2048715 2048848 -180366394 + FLAM_C SINE Alu 1 132 -1 582 263 108 31 chr6 2049239 2049752 -180365490 - L1MEd LINE L1 -4739 1392 958 390 205 0 0 chr6 2049754 2049837 -180365405 + C-rich Low_complexity Low_complexity 4 86 0 479 305 94 15 chr6 2049880 2050211 -180365031 - L1MEd LINE L1 -5194 925 569 339 278 0 21 chr6 2050310 2050407 -180364835 - L1MC4 LINE L1 -1334 6708 6614 270 81 0 0 chr6 2050407 2050444 -180364798 + (CA)n Simple_repeat Simple_repeat 2 38 0 183 80 0 0 chr6 2051000 2051025 -180364217 + (CATG)n Simple_repeat Simple_repeat 3 27 0 807 214 107 5 chr6 2051650 2051846 -180363396 - MER20 DNA MER1_type 0 219 4 769 279 259 13 chr6 2052020 2052697 -180362545 - L2 LINE L2 -1020 2294 1452 345 279 39 90 chr6 2053451 2053684 -180361558 + MLT1K LTR MaLR 360 580 -8 349 330 35 9 chr6 2054207 2054322 -180360920 + L2 LINE L2 3181 3298 -15 2209 80 3 0 chr6 2055049 2055335 -180359907 + AluY SINE Alu 1 287 -24 1457 52 0 0 chr6 2055346 2055519 -180359723 + AluYa8 SINE Alu 133 305 -5 632 236 0 8 chr6 2056453 2056580 -180358662 + FLAM_A SINE Alu 1 126 -7 462 289 168 10 chr6 2057121 2057318 -180357924 + MIR SINE MIR 25 252 -10 542 289 54 0 chr6 2058858 2059024 -180356218 - MIR SINE MIR -45 217 43 870 151 11 81 chr6 2059314 2059500 -180355742 + AluJo SINE Alu 120 292 -20 294 260 60 30 chr6 2060070 2060170 -180355072 - MIR SINE MIR -91 171 69 798 202 19 84 chr6 2061707 2061920 -180353322 - MER20 DNA MER1_type -19 200 2 846 152 15 8 chr6 2062387 2062519 -180352723 - AluJb SINE Alu -178 134 2 249 278 55 35 chr6 2062876 2063006 -180352236 + MIR SINE MIR 54 187 -21 22 0 0 0 chr6 2064639 2064661 -180350581 + AT_rich Low_complexity Low_complexity 1 22 0 3428 155 37 12 chr6 2065015 2065607 -180349635 - Tigger1 DNA MER2_type -128 2290 1684 2177 161 45 15 chr6 2065603 2066000 -180349242 - Tigger1 DNA MER2_type -1980 438 30 * 405 178 89 141 chr6 2066015 2066150 -180349092 - MER7A DNA MER2_type -220 126 1 180 111 0 0 chr6 2066592 2066619 -180348623 + (A)n Simple_repeat Simple_repeat 1 27 0 753 236 144 5 chr6 2067020 2067215 -180348027 - MER58A DNA MER1_type -2 222 1 2149 95 35 3 chr6 2067642 2067927 -180347315 - AluSx SINE Alu -18 294 1 380 271 119 0 chr6 2068071 2068189 -180347053 - L2 LINE L2 0 3272 3141 1694 184 0 14 chr6 2068636 2068930 -180346312 - AluJo SINE Alu -22 290 1 23 33 0 0 chr6 2068930 2068960 -180346282 + AT_rich Low_complexity Low_complexity 1 30 0 1142 183 69 19 chr6 2069913 2070175 -180345067 + L1MA5A LINE L1 6002 6276 -21 195 299 10 72 chr6 2072099 2072196 -180343046 - MER5A DNA MER1_type -63 126 36 * 239 231 44 66 chr6 2072124 2072215 -180343027 + MER5A DNA MER1_type 96 184 -5 1990 169 58 64 chr6 2072883 2073689 -180341553 - L1MB7 LINE L1 -1 6183 5373 2411 110 0 0 chr6 2073689 2073999 -180341243 - AluSg SINE Alu 0 310 1 1091 147 24 18 chr6 2074006 2074176 -180341066 - FAM SINE Alu -4 171 1 1990 169 58 64 chr6 2074176 2074491 -180340751 - L1MB7 LINE L1 -817 5367 4868 182 266 78 16 chr6 2074744 2074808 -180340434 - MIR SINE MIR -83 125 58 208 233 67 100 chr6 2075181 2075271 -180339971 - MIR SINE MIR -3 259 173 4819 36 21 5 chr6 2075512 2076071 -180339171 - L1PA4 LINE L1 -6 6149 5582 1551 180 7 34 chr6 2076365 2076659 -180338583 + AluJo SINE Alu 1 286 -26 840 246 24 28 chr6 2076766 2076977 -180338265 + MER58A DNA MER1_type 13 222 -2 221 360 56 0 chr6 2077682 2077771 -180337471 + L2 LINE L2 2543 2636 -678 367 260 309 18 chr6 2077790 2078179 -180337063 + L2 LINE L2 2811 3312 -1 247 273 45 0 chr6 2079654 2079720 -180335522 + L2 LINE L2 3142 3210 -62 2600 64 0 3 chr6 2079804 2080115 -180335127 + AluY SINE Alu 1 310 -1 26 0 0 0 chr6 2080144 2080170 -180335072 + AT_rich Low_complexity Low_complexity 1 26 0 400 257 64 9 chr6 2080680 2080789 -180334453 + L2 LINE L2 3197 3311 -2 1339 123 30 5 chr6 2081590 2081793 -180333449 + L1PA10 LINE L1 5954 6161 -7 41 66 0 0 chr6 2082991 2083067 -180332175 + AT_rich Low_complexity Low_complexity 1 76 0 24 53 0 0 chr6 2083087 2083125 -180332117 + AT_rich Low_complexity Low_complexity 1 38 0 808 286 18 21 chr6 2083375 2083655 -180331587 + Charlie4 DNA MER1_type 18 296 -1665 597 222 58 18 chr6 2083656 2083827 -180331415 + Charlie4 DNA MER1_type 1784 1961 0 22 0 0 0 chr6 2084471 2084493 -180330749 + AT_rich Low_complexity Low_complexity 1 22 0 2302 97 0 23 chr6 2085573 2085882 -180329360 + AluSx SINE Alu 1 302 -10 449 174 87 0 chr6 2087178 2087270 -180327972 + L2 LINE L2 3173 3272 0 20624 185 34 15 chr6 2088305 2092848 -180322394 + L1PB4 LINE L1 18 5493 -2119 1755 105 0 4 chr6 2092848 2093077 -180322165 + AluSq SINE Alu 1 228 -85 20624 185 34 15 chr6 2093077 2094653 -180320589 + L1PB4 LINE L1 5493 7037 -575 604 242 47 38 chr6 2094783 2094994 -180320248 + AluJo SINE Alu 81 293 -19 1479 220 24 3 chr6 2094999 2095331 -180319911 + L1PB4 LINE L1 7250 7588 -6 303 318 104 20 chr6 2095350 2095551 -180319691 + L1M4 LINE L1 2115 2332 -3814 345 328 91 70 chr6 2095564 2095906 -180319336 + L1MCa LINE L1 42 390 -6036 360 243 72 27 chr6 2096064 2096175 -180319067 + L2 LINE L2 3197 3312 -1 839 181 40 6 chr6 2096980 2097157 -180318085 + L1PA11 LINE L1 5956 6138 -36 472 311 63 70 chr6 2097396 2097869 -180317373 + L2 LINE L2 2844 3313 0 25 31 0 0 chr6 2098460 2098492 -180316750 + AT_rich Low_complexity Low_complexity 1 32 0 252 333 52 7 chr6 2099174 2099309 -180315933 - HAL1 LINE L1 -822 1685 1545 253 336 45 9 chr6 2100277 2100387 -180314855 + L2 LINE L2 3150 3263 -9 293 350 60 0 chr6 2101356 2101456 -180313786 - L2 LINE L2 -9 3263 3158 2414 121 6 6 chr6 2102528 2102892 -180312350 + L1PA11 LINE L1 5803 6166 -8 202 351 69 8 chr6 2103110 2103241 -180312001 + L2 LINE L2 2617 2755 -559 2448 71 0 3 chr6 2104269 2104566 -180310676 - AluY SINE Alu -13 298 3 942 192 75 43 chr6 2104569 2104850 -180310392 - L1MB8 LINE L1 -72 6106 5817 1013 175 0 29 chr6 2104888 2105059 -180310183 - FRAM SINE Alu -10 166 1 2425 182 34 12 chr6 2105059 2105722 -180309520 - L1MB8 LINE L1 -351 5827 5152 1269 227 60 5 chr6 2105760 2106144 -180309098 + L1M4 LINE L1 4611 5015 -1131 345 226 38 9 chr6 2106147 2106253 -180308989 - HAL1b LINE L1 -616 732 624 377 286 259 5 chr6 2106433 2106618 -180308624 - L2 LINE L2 0 3313 3082 313 211 79 72 chr6 2106627 2106779 -180308463 + HAL1b LINE L1 905 1057 -291 294 269 44 55 chr6 2107780 2107962 -180307280 + MLT1J LTR MaLR 253 432 -79 216 240 56 112 chr6 2108164 2108343 -180306899 + L2 LINE L2 2894 3062 -210 2187 130 0 0 chr6 2108579 2108896 -180306346 - AluSx SINE Alu 0 317 1 237 227 175 10 chr6 2109666 2109763 -180305479 + MER103 DNA DNA 37 149 -17 219 69 0 0 chr6 2110803 2110832 -180304410 + (TAAA)n Simple_repeat Simple_repeat 2 30 0 728 247 97 23 chr6 2113205 2113464 -180301778 - L2 LINE L2 -1 3312 3035 689 282 19 34 chr6 2113534 2113740 -180301502 - MIR SINE MIR -13 249 47 22 70 0 0 chr6 2114471 2114514 -180300728 + AT_rich Low_complexity Low_complexity 1 43 0 382 161 39 23 chr6 2116244 2116374 -180298868 + CT-rich Low_complexity Low_complexity 3 134 0 1083 304 83 15 chr6 2116620 2117091 -180298151 - MLT1J LTR MaLR -8 503 1 2332 93 0 3 chr6 2117418 2117718 -180297524 + AluSc SINE Alu 1 299 -10 254 182 55 0 chr6 2118575 2118630 -180296612 + GA-rich Low_complexity Low_complexity 4 61 0 318 313 57 62 chr6 2118630 2118718 -180296524 + HAL1b LINE L1 430 517 -831 1270 216 81 6 chr6 2118718 2119038 -180296204 - MER2 DNA MER2_type 0 344 1 318 313 57 62 chr6 2119038 2119176 -180296066 + HAL1b LINE L1 517 655 -693 2351 87 3 0 chr6 2119232 2119531 -180295711 + AluSg SINE Alu 1 300 -10 229 211 0 0 chr6 2119998 2120055 -180295187 - HAL1b LINE L1 -571 777 721 463 36 99 0 chr6 2120086 2120197 -180295045 + (TA)n Simple_repeat Simple_repeat 2 123 0 6174 148 65 25 chr6 2120689 2121872 -180293370 - Tigger3b DNA MER2_type 0 1231 1 381 247 9 57 chr6 2122395 2122580 -180292662 + MER34 LTR ERV1 1 201 -341 * 701 215 45 33 chr6 2122579 2122821 -180292421 + MER39 LTR ERV1 463 707 0 201 313 0 0 chr6 2122895 2122962 -180292280 + (CATATA)n Simple_repeat Simple_repeat 2 68 0 488 202 47 0 chr6 2125304 2125433 -180289809 + Charlie5 DNA MER1_type 2489 2623 0 5600 110 16 14 chr6 2125476 2126477 -180288765 + L1PA13 LINE L1 5160 6160 -3 25 0 0 0 chr6 2126866 2126891 -180288351 + AT_rich Low_complexity Low_complexity 1 25 0 23 54 0 0 chr6 2127060 2127097 -180288145 + AT_rich Low_complexity Low_complexity 1 37 0 22 35 0 0 chr6 2127521 2127550 -180287692 + AT_rich Low_complexity Low_complexity 1 29 0 1819 159 7 13 chr6 2127680 2127981 -180287261 + AluJo SINE Alu 1 299 -13 1279 223 84 12 chr6 2128210 2128784 -180286458 + L1M4 LINE L1 2613 3227 -2919 2153 133 0 0 chr6 2128949 2129257 -180285985 - AluSx SINE Alu -4 308 1 1037 183 68 8 chr6 2129259 2129494 -180285748 - Tigger2 DNA MER2_type 0 2718 2470 29 28 0 0 chr6 2129620 2129656 -180285586 + AT_rich Low_complexity Low_complexity 1 36 0 3544 192 33 18 chr6 2129970 2130758 -180284484 - L1MB8 LINE L1 -10 6168 5369 2188 238 27 28 chr6 2130738 2131123 -180284119 - L1MB8 LINE L1 -1780 4366 3981 * 1922 113 73 0 chr6 2131123 2131397 -180283845 - AluSx SINE Alu -18 294 1 2188 238 27 28 chr6 2131397 2131721 -180283521 - L1MB8 LINE L1 -2165 3981 3658 187 51 0 51 chr6 2131953 2131992 -180283250 + (TAAA)n Simple_repeat Simple_repeat 4 40 0 21 36 0 0 chr6 2133213 2133241 -180282001 + AT_rich Low_complexity Low_complexity 1 28 0 292 311 50 42 chr6 2135400 2135638 -180279604 + L1MEc LINE L1 1093 1332 -4873 314 275 79 44 chr6 2135762 2135971 -180279271 + L1MEc LINE L1 1546 1761 -815 450 0 0 0 chr6 2137007 2137057 -180278185 + (TG)n Simple_repeat Simple_repeat 2 51 0 211 200 0 0 chr6 2137135 2137170 -180278072 + (CA)n Simple_repeat Simple_repeat 2 36 0 24 0 0 0 chr6 2138565 2138589 -180276653 + AT_rich Low_complexity Low_complexity 1 24 0 180 111 0 0 chr6 2139783 2139810 -180275432 + (T)n Simple_repeat Simple_repeat 1 27 0 27 0 0 0 chr6 2140639 2140666 -180274576 + AT_rich Low_complexity Low_complexity 1 27 0 263 243 171 0 chr6 2141808 2141878 -180273364 - MER102a DNA MER1_type -3 327 246 332 193 263 18 chr6 2141882 2141996 -180273246 - MER5A DNA MER1_type 0 189 48 832 264 63 70 chr6 2142107 2142580 -180272662 - L2 LINE L2 0 3313 2844 398 277 43 28 chr6 2143340 2143481 -180271761 - L2 LINE L2 0 3313 3171 422 320 19 13 chr6 2144523 2144679 -180270563 - MER5A DNA MER1_type -1 188 32 228 252 56 9 chr6 2144786 2144893 -180270349 + Charlie7 DNA MER1_type 2435 2546 -66 479 239 62 0 chr6 2144960 2145090 -180270152 - MER58C DNA MER1_type 0 215 78 600 146 21 0 chr6 2145100 2145196 -180270046 + L1MB7 LINE L1 5894 5991 -193 296 314 176 29 chr6 2146829 2147141 -180268101 + L2 LINE L2 1963 2320 -994 1464 202 7 20 chr6 2147185 2147487 -180267755 + AluJo SINE Alu 1 298 -14 206 245 0 0 chr6 2148571 2148624 -180266618 + T-rich Low_complexity Low_complexity 1 53 0 283 128 0 0 chr6 2148627 2148674 -180266568 - L1PA16 LINE L1 0 6166 6120 255 314 67 0 chr6 2150030 2150135 -180265107 - MIR SINE MIR -30 232 121 186 351 13 26 chr6 2150334 2150411 -180264831 + MER5A DNA MER1_type 45 120 -69 1331 265 122 40 chr6 2150905 2151088 -180264154 + L1MDa LINE L1 1475 1641 -5080 2347 103 0 0 chr6 2151088 2151398 -180263844 + AluSg SINE Alu 1 310 0 1331 265 122 40 chr6 2151398 2152153 -180263089 + L1MDa LINE L1 1641 2536 -4185 * 4855 141 26 22 chr6 2152137 2152673 -180262569 + L1PB4 LINE L1 5291 5833 -323 1318 206 29 32 chr6 2152673 2152984 -180262258 + AluJo SINE Alu 1 310 -2 4855 141 26 22 chr6 2152984 2153308 -180261934 + L1PB4 LINE L1 5833 6154 -2 409 257 104 15 chr6 2153323 2153525 -180261717 + L1MDa LINE L1 2509 2728 -3812 * 3240 238 151 69 chr6 2153520 2154967 -180260275 + L1MCa LINE L1 26 1352 -5074 318 50 0 0 chr6 2154967 2155007 -180260235 + (TA)n Simple_repeat Simple_repeat 2 41 0 3240 238 151 69 chr6 2155007 2156678 -180258564 + L1MCa LINE L1 1352 3409 -3017 1378 180 117 25 chr6 2156679 2156996 -180258246 - MER44D DNA MER2_type -1 604 387 1607 161 16 82 chr6 2156996 2157313 -180257929 + AluJb SINE Alu 1 296 -16 392 303 0 0 chr6 2157371 2157516 -180257726 + L1MDa LINE L1 2757 2901 -3639 1458 184 4 11 chr6 2157617 2157888 -180257354 - AluJb SINE Alu -23 289 21 2163 115 0 7 chr6 2158631 2158936 -180256306 - AluSq SINE Alu -10 303 1 23 68 0 0 chr6 2158956 2159000 -180256242 + AT_rich Low_complexity Low_complexity 1 44 0 787 252 96 32 chr6 2159522 2160022 -180255220 - L1M4 LINE L1 -1331 4815 4284 1159 175 154 34 chr6 2160026 2160351 -180254891 + MLT1A2 LTR MaLR 7 370 -4 289 265 82 20 chr6 2160356 2160552 -180254690 - L1M4 LINE L1 -1862 4284 4077 1144 195 8 51 chr6 2160616 2160873 -180254369 + MLT1D LTR MaLR 2 247 -258 8396 69 3 2 chr6 2160874 2162019 -180253223 + L1P LINE L1 2837 3982 -2164 1837 79 12 8 chr6 2162019 2162270 -180252972 + L1PA6 LINE L1 5902 6154 0 876 190 109 19 chr6 2162281 2162492 -180252750 + MLT1D LTR MaLR 269 498 -7 745 287 54 9 chr6 2162530 2162847 -180252395 - L1M4 LINE L1 -2229 3917 3587 552 229 70 78 chr6 2162923 2162984 -180252258 - L1M4 LINE L1 -3525 2621 2561 2466 81 0 0 chr6 2162984 2163291 -180251951 + AluSg SINE Alu 1 307 -3 552 229 70 78 chr6 2163291 2163513 -180251729 - L1M4 LINE L1 -3585 2561 2340 186 408 26 26 chr6 2163514 2163666 -180251576 - L2 LINE L2 -225 3047 2896 238 303 56 42 chr6 2163723 2163865 -180251377 + MLT1L LTR MaLR 44 187 -428 342 330 135 14 chr6 2163933 2164148 -180251094 + MLT1L LTR MaLR 353 593 -22 1196 215 111 82 chr6 2165424 2165945 -180249297 + L1ME LINE L1 929 1464 -5483 181 0 33 33 chr6 2165946 2165976 -180249266 + (CAAAA)n Simple_repeat Simple_repeat 2 31 0 811 230 86 63 chr6 2165980 2166572 -180248670 + L1ME LINE L1 1413 2141 -4816 195 247 193 30 chr6 2166885 2167054 -180248188 + MIR SINE MIR 2 246 -16 369 263 10 0 chr6 2167165 2167264 -180247978 - MER104 DNA Tc2 -12 168 69 641 263 43 16 chr6 2167332 2167518 -180247724 - MIR SINE MIR -59 203 13 432 343 6 23 chr6 2167710 2167885 -180247357 + MER5B DNA MER1_type 4 175 -3 25 0 0 0 chr6 2168043 2168068 -180247174 + AT_rich Low_complexity Low_complexity 1 25 0 245 309 119 40 chr6 2168373 2168499 -180246743 + L2 LINE L2 3136 3271 -1 691 260 73 0 chr6 2168915 2169107 -180246135 + MER3 DNA MER1_type 4 209 0 1871 126 72 0 chr6 2169224 2169502 -180245740 + AluSx SINE Alu 1 298 -14 264 337 0 20 chr6 2169635 2169736 -180245506 + L3 LINE CR1 1362 1460 -117 2138 125 13 0 chr6 2170048 2170353 -180244889 + AluSx SINE Alu 4 312 0 2783 10 0 0 chr6 2170574 2170875 -180244367 + AluY SINE Alu 1 301 -10 569 295 105 45 chr6 2171594 2171895 -180243347 - L2 LINE L2 -1 3312 2970 2121 93 45 0 chr6 2171895 2172184 -180243058 + AluSc SINE Alu 1 302 -7 569 295 105 45 chr6 2172184 2172374 -180242868 - L2 LINE L2 -343 2970 2793 2100 139 0 7 chr6 2172582 2172891 -180242351 + AluSx SINE Alu 1 307 -5 329 301 107 11 chr6 2173925 2174100 -180241142 + MIR SINE MIR 21 214 -48 293 354 0 0 chr6 2174226 2174325 -180240917 + L2 LINE L2 3210 3308 -5 365 296 176 0 chr6 2175960 2176102 -180239140 - MIR SINE MIR -12 250 84 37606 34 25 2 chr6 2176115 2181579 -180233663 + L1PA3 LINE L1 564 6155 0 245 167 0 17 chr6 2181580 2181640 -180233602 - Charlie4 DNA MER1_type -133 1828 1770 245 259 45 80 chr6 2182965 2183077 -180232165 + MIR SINE MIR 41 148 -114 274 211 28 0 chr6 2183206 2183277 -180231965 + (TG)n Simple_repeat Simple_repeat 1 73 0 5943 151 27 78 chr6 2184516 2185816 -180229426 - L1MA4A LINE L1 -7 6296 5007 748 207 7 0 chr6 2185816 2185951 -180229291 - AluJo SINE Alu -176 136 1 5943 151 27 78 chr6 2185951 2186403 -180228839 - L1MA4A LINE L1 -1296 5007 4533 10349 202 41 25 chr6 2186423 2191936 -180223306 - L1PA4 LINE L1 -4 6853 1270 270 200 12 62 chr6 2192032 2192112 -180223130 + MER116 DNA Mariner 1 76 -4 220 209 0 0 chr6 2193311 2193354 -180221888 + (CA)n Simple_repeat Simple_repeat 2 44 0 267 234 124 16 chr6 2193771 2193963 -180221279 - MER112 DNA MER1_type 0 260 21 24 32 0 0 chr6 2195085 2195116 -180220126 + AT_rich Low_complexity Low_complexity 1 31 0 2549 50 0 3 chr6 2195654 2195954 -180219288 - AluY SINE Alu -12 299 1 1918 143 11 0 chr6 2196687 2196974 -180218268 - AluJo SINE Alu -22 290 1 219 241 103 46 chr6 2197033 2197120 -180218122 + MIR SINE MIR 57 148 -114 238 253 0 81 chr6 2199484 2199571 -180215671 + MIR SINE MIR 128 207 -55 234 294 43 33 chr6 2200123 2200215 -180215027 - L2 LINE L2 0 3313 3221 263 242 10 30 chr6 2200627 2200726 -180214516 + GA-rich Low_complexity Low_complexity 1 97 0 372 366 72 19 chr6 2200727 2200989 -180214253 - L1MEd LINE L1 -5382 737 462 467 353 30 15 chr6 2202586 2202787 -180212455 + L3 LINE CR1 946 1149 -428 1136 173 133 41 chr6 2202791 2203062 -180212180 + AluJb SINE Alu 6 301 -11 716 327 110 36 chr6 2205141 2205640 -180209602 + L3 LINE CR1 457 992 -585 441 330 121 35 chr6 2205679 2206052 -180209190 + L3 LINE CR1 1167 1571 -6 722 255 210 13 chr6 2206244 2206558 -180208684 + HsTC2 DNA Tc2 24 399 -1499 * 783 227 48 13 chr6 2206555 2206784 -180208458 + HsTC2 DNA Tc2 1659 1895 -3 273 348 11 11 chr6 2206856 2206948 -180208294 - L3 LINE CR1 -4 1573 1482 304 255 131 48 chr6 2207152 2207297 -180207945 + L1M LINE L1 5257 5413 -2395 23 24 0 24 chr6 2209198 2209216 -180206026 + AT_rich Low_complexity Low_complexity 1 18 -22 2034 100 14 14 chr6 2209216 2209505 -180205737 - AluSx SINE Alu -23 289 1 23 24 0 24 chr6 2209505 2209527 -180205715 + AT_rich Low_complexity Low_complexity 18 40 0 324 206 0 184 chr6 2211109 2211245 -180203997 - MIR3 SINE MIR -9 199 89 189 154 0 0 chr6 2212454 2212493 -180202749 + A-rich Low_complexity Low_complexity 1 39 0 21 0 0 0 chr6 2214924 2214945 -180200297 + AT_rich Low_complexity Low_complexity 1 21 0 2543 62 0 0 chr6 2216050 2216356 -180198886 + AluY SINE Alu 3 308 -3 2279 111 0 0 chr6 2217728 2218034 -180197208 + AluSx SINE Alu 1 306 -6 23 33 0 0 chr6 2219513 2219543 -180195699 + AT_rich Low_complexity Low_complexity 1 30 0 25 0 0 0 chr6 2219610 2219635 -180195607 + AT_rich Low_complexity Low_complexity 1 25 0 348 314 109 6 chr6 2220448 2220604 -180194638 - L2 LINE L2 -229 3084 2913 238 342 9 45 chr6 2220641 2220752 -180194490 - MIR SINE MIR -129 133 27 484 268 31 0 chr6 2223579 2223706 -180191536 + MER5A DNA MER1_type 1 131 -58 204 255 0 0 chr6 2224944 2224991 -180190251 + L2 LINE L2 3267 3313 0 246 32 0 0 chr6 2226096 2226127 -180189115 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 279 302 43 43 chr6 2227880 2228019 -180187223 + MIR3 SINE MIR 1 139 -69 25 0 0 0 chr6 2228212 2228237 -180187005 + AT_rich Low_complexity Low_complexity 1 25 0 425 268 167 26 chr6 2231260 2231457 -180183785 - MIR SINE MIR -3 259 32 672 256 21 10 chr6 2232118 2232327 -180182915 - MIR SINE MIR -41 221 12 316 274 260 7 chr6 2233372 2233518 -180181724 + MER5A DNA MER1_type 3 185 -4 238 290 81 16 chr6 2236145 2236207 -180179035 + MIR SINE MIR 23 88 -174 611 229 0 0 chr6 2236303 2236412 -180178830 + FLAM_C SINE Alu 1 109 -34 261 0 0 0 chr6 2236423 2236452 -180178790 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 730 161 8 0 chr6 2236457 2236575 -180178667 - FLAM_C SINE Alu -24 119 1 992 194 0 0 chr6 2236587 2236762 -180178480 + AluJb SINE Alu 129 303 -9 22 0 0 0 chr6 2237166 2237188 -180178054 + AT_rich Low_complexity Low_complexity 1 22 0 1933 140 10 0 chr6 2237777 2238077 -180177165 - AluSx SINE Alu -7 305 3 2154 119 3 3 chr6 2239318 2239612 -180175630 - AluSq SINE Alu -9 304 11 306 275 38 0 chr6 2239667 2239747 -180175495 - MIR SINE MIR -134 128 46 453 231 25 100 chr6 2241056 2241216 -180174026 - MIR3 SINE MIR -31 177 30 421 200 0 0 chr6 2242595 2242670 -180172572 + Tigger5 DNA MER2_type 5 79 -2244 287 194 83 28 chr6 2242672 2242744 -180172498 - Tigger5 DNA MER2_type -6 2317 2242 * 339 217 0 0 chr6 2242740 2242809 -180172433 + Tigger5 DNA MER2_type 2255 2323 0 624 249 82 27 chr6 2243117 2243326 -180171916 - MIR SINE MIR -4 258 42 454 283 108 28 chr6 2246023 2246235 -180169007 - MIR SINE MIR 0 262 34 26 30 0 0 chr6 2246312 2246345 -180168897 + AT_rich Low_complexity Low_complexity 1 33 0 297 0 0 0 chr6 2246743 2246776 -180168466 + (CAT)n Simple_repeat Simple_repeat 1 33 0 1944 152 61 7 chr6 2246833 2247035 -180168207 - Charlie5 DNA MER1_type 0 2624 2434 1460 164 126 7 chr6 2247035 2247345 -180167897 - MER7A DNA MER2_type 0 346 2 1944 152 61 7 chr6 2247345 2247582 -180167660 - Charlie5 DNA MER1_type -190 2434 2161 1310 169 60 70 chr6 2247582 2247884 -180167358 + AluJo SINE Alu 1 299 -13 1058 208 0 0 chr6 2247897 2248080 -180167162 + FRAM SINE Alu 1 176 0 3190 200 79 39 chr6 2248080 2248481 -180166761 - Charlie5 DNA MER1_type -454 2170 1787 2402 73 7 3 chr6 2248481 2248781 -180166461 - AluSp SINE Alu -12 301 1 3190 200 79 39 chr6 2248781 2249650 -180165592 - Charlie5 DNA MER1_type -837 1787 823 719 139 9 0 chr6 2249650 2249765 -180165477 + MSTB LTR MaLR 1 116 -310 559 174 74 0 chr6 2249753 2249874 -180165368 + MSTB LTR MaLR 299 428 -4 * 1160 217 170 28 chr6 2249878 2250211 -180165031 - Charlie5 DNA MER1_type -1797 827 543 904 158 0 0 chr6 2250211 2250357 -180164885 + L1PB3 LINE L1 6008 6153 -1 1160 217 170 28 chr6 2250357 2250666 -180164576 - Charlie5 DNA MER1_type -2081 543 15 735 275 54 0 chr6 2250675 2250897 -180164345 - MIR SINE MIR -27 235 2 1092 223 157 55 chr6 2251181 2251639 -180163603 + MLT1D LTR MaLR 1 505 0 254 29 29 0 chr6 2253013 2253048 -180162194 + (TC)n Simple_repeat Simple_repeat 2 37 0 2501 155 23 32 chr6 2253395 2253866 -180161376 + MLT1C LTR MaLR 1 467 0 217 271 51 0 chr6 2254187 2254246 -180160996 + L2 LINE L2 3138 3199 -73 198 0 0 0 chr6 2255049 2255071 -180160171 + (TTCA)n Simple_repeat Simple_repeat 4 25 0 315 283 126 25 chr6 2255213 2255372 -180159870 - MIR SINE MIR -37 225 51 1298 217 68 25 chr6 2255467 2255910 -180159332 - MER74B LTR ERVL -103 519 58 2135 108 0 11 chr6 2256400 2256717 -180158525 + AluSx SINE Alu 1 314 0 478 154 235 0 chr6 2256753 2256915 -180158327 - MER2 DNA MER2_type -26 319 120 498 180 30 0 chr6 2256915 2257015 -180158227 + FLAM_A SINE Alu 22 124 -18 542 184 149 0 chr6 2257015 2257129 -180158113 - MER2 DNA MER2_type -213 132 2 613 302 16 21 chr6 2257144 2257386 -180157856 + L1ME LINE L1 5336 5576 -586 213 310 0 0 chr6 2257666 2257724 -180157518 + MIR3 SINE MIR 149 206 -2 2202 115 3 0 chr6 2259555 2259867 -180155375 - AluSq SINE Alu 0 313 1 216 315 76 11 chr6 2260139 2260231 -180155011 - MIR3 SINE MIR -8 200 103 638 191 30 30 chr6 2261415 2261546 -180153696 + FLAM_C SINE Alu 1 131 -2 407 283 25 57 chr6 2261632 2261791 -180153451 + MIR3 SINE MIR 34 187 -21 21 57 0 19 chr6 2262196 2262213 -180153029 + AT_rich Low_complexity Low_complexity 1 17 -35 1534 91 55 0 chr6 2262213 2262467 -180152775 + L1MA2 LINE L1 6037 6304 0 21 57 0 19 chr6 2262467 2262502 -180152740 + AT_rich Low_complexity Low_complexity 17 52 0 192 283 0 19 chr6 2262611 2262664 -180152578 + MIR SINE MIR 69 120 -142 327 293 87 62 chr6 2263527 2263848 -180151394 + L1ME LINE L1 4259 4587 -1559 893 131 138 0 chr6 2264076 2264236 -180151006 + AluSq SINE Alu 132 313 0 567 299 83 56 chr6 2264252 2264878 -180150364 + L1ME LINE L1 4894 5547 -751 245 228 25 13 chr6 2264895 2264974 -180150268 + L1ME LINE L1 5612 5691 -430 22 35 0 0 chr6 2265301 2265330 -180149912 + AT_rich Low_complexity Low_complexity 1 29 0 225 65 0 0 chr6 2266011 2266042 -180149200 + (A)n Simple_repeat Simple_repeat 1 31 0 323 265 212 13 chr6 2268293 2268444 -180146798 - MER5A DNA MER1_type 0 189 9 471 180 18 81 chr6 2270343 2270454 -180144788 - Tigger2 DNA MER2_type -1 2717 2614 507 154 0 0 chr6 2270454 2270532 -180144710 - AluJ/FLAM SINE Alu -234 78 1 1259 81 113 57 chr6 2270532 2270654 -180144588 - Tigger2 DNA MER2_type -2456 262 148 2329 113 7 0 chr6 2270654 2270964 -180144278 - AluSx SINE Alu 0 312 1 1259 81 113 57 chr6 2270964 2271089 -180144153 - Tigger2 DNA MER2_type -2570 148 1 227 293 47 28 chr6 2271452 2271558 -180143684 - MIR SINE MIR -33 229 122 1423 151 98 19 chr6 2271712 2271977 -180143265 - AluJb SINE Alu -26 286 1 2238 97 7 0 chr6 2272166 2272456 -180142786 - AluY SINE Alu -19 292 1 188 265 191 0 chr6 2273348 2273416 -180141826 + MIR3 SINE MIR 15 95 -113 459 0 0 0 chr6 2273807 2273858 -180141384 + (CA)n Simple_repeat Simple_repeat 2 52 0 784 233 150 53 chr6 2274514 2274555 -180140687 - MLT2B1 LTR ERVL 0 520 484 216 67 0 0 chr6 2274555 2274585 -180140657 + (TG)n Simple_repeat Simple_repeat 1 30 0 784 233 150 53 chr6 2274585 2274882 -180140360 - MLT2B1 LTR ERVL -36 484 149 3846 201 55 7 chr6 2274911 2276336 -180138906 - ERVL-B1 LTR ERVL -4219 1545 2 1122 215 195 31 chr6 2276337 2276784 -180138458 - MLT2B1 LTR ERVL 0 520 1 452 320 47 65 chr6 2277019 2277360 -180137882 + L1MEd LINE L1 923 1257 -4862 243 230 144 58 chr6 2277521 2277660 -180137582 - MIR SINE MIR -26 236 86 244 293 29 71 chr6 2277703 2277843 -180137399 - MIR SINE MIR -69 193 60 194 304 54 22 chr6 2277879 2277971 -180137271 + MIR3 SINE MIR 95 189 -19 272 313 0 10 chr6 2278249 2278345 -180136897 + L2 LINE L2 1890 1984 -1330 193 287 111 80 chr6 2278370 2278784 -180136458 + L2 LINE L2 2430 2856 -458 205 346 0 39 chr6 2279015 2279093 -180136149 + L2 LINE L2 3238 3312 -1 1937 115 0 48 chr6 2280482 2280794 -180134448 + AluSx SINE Alu 11 307 -5 2376 96 3 0 chr6 2281069 2281381 -180133861 + AluSp SINE Alu 1 313 0 1919 180 0 3 chr6 2281491 2281796 -180133446 + AluJo SINE Alu 1 304 -8 2460 71 0 0 chr6 2281861 2282158 -180133084 + AluY SINE Alu 1 297 -14 434 186 72 0 chr6 2282471 2282568 -180132674 - MLT1A2 LTR MaLR -2 372 269 2298 79 0 7 chr6 2283558 2283850 -180131392 + AluSg1 SINE Alu 1 290 -19 351 264 138 75 chr6 2284041 2284389 -180130853 + L1MEd LINE L1 2659 3028 -3101 225 283 120 0 chr6 2285059 2285151 -180130091 - MIR SINE MIR -110 152 50 327 250 0 14 chr6 2285259 2285331 -180129911 - L2 LINE L2 -2 3311 3241 266 0 29 0 chr6 2285692 2285726 -180129516 + (TTTTG)n Simple_repeat Simple_repeat 2 36 0 2065 126 0 3 chr6 2285731 2286016 -180129226 - AluSx SINE Alu -28 284 1 269 183 95 103 chr6 2286933 2287059 -180128183 - MIR SINE MIR -4 258 134 233 128 43 0 chr6 2287059 2287106 -180128136 - MIR SINE MIR -98 164 116 22 0 0 0 chr6 2287348 2287370 -180127872 + AT_rich Low_complexity Low_complexity 1 22 0 25 31 0 0 chr6 2287410 2287442 -180127800 + AT_rich Low_complexity Low_complexity 1 32 0 2253 206 7 0 chr6 2288502 2288938 -180126304 + L1PA16 LINE L1 3648 4086 -2060 3331 152 6 11 chr6 2288939 2289331 -180125911 + L1PA16 LINE L1 5649 6039 -127 2745 130 25 35 chr6 2289331 2289763 -180125479 - MSTA LTR MaLR 0 428 1 3331 152 6 11 chr6 2289763 2289890 -180125352 + L1PA16 LINE L1 6039 6165 -1 1387 209 49 57 chr6 2290498 2290866 -180124376 + MLT1A1 LTR MaLR 1 365 0 30 0 0 0 chr6 2291779 2291809 -180123433 + AT_rich Low_complexity Low_complexity 1 30 0 187 196 206 52 chr6 2291900 2291997 -180123245 - L3 LINE CR1 -884 693 582 2301 84 0 26 chr6 2292033 2292343 -180122899 + AluY SINE Alu 1 302 -9 1081 276 157 28 chr6 2292419 2292587 -180122655 + L2 LINE L2 2353 2498 -815 13768 136 50 45 chr6 2292587 2293868 -180121374 + Tigger1 DNA MER2_type 1 1300 -1118 1805 161 0 7 chr6 2293868 2294153 -180121089 - AluJb SINE Alu -27 285 3 13768 136 50 45 chr6 2294153 2295278 -180119964 + Tigger1 DNA MER2_type 1300 2418 0 1081 276 157 28 chr6 2295278 2295728 -180119514 + L2 LINE L2 2498 3056 -257 590 175 165 10 chr6 2295761 2295955 -180119287 - MER5C DNA MER1_type 0 324 101 468 226 0 21 chr6 2296106 2296199 -180119043 - L2 LINE L2 -38 3275 3185 283 178 89 0 chr6 2297033 2297108 -180118134 - MIR SINE MIR -65 197 115 23 68 0 0 chr6 2297128 2297172 -180118070 + AT_rich Low_complexity Low_complexity 1 44 0 284 346 19 56 chr6 2298680 2298878 -180116364 - MIR SINE MIR -51 211 19 298 281 133 31 chr6 2300588 2300716 -180114526 - MER5A DNA MER1_type -2 187 36 422 313 48 12 chr6 2301528 2301694 -180113548 - MIR SINE MIR -70 192 21 6332 187 84 71 chr6 2302523 2304107 -180111135 + MER52A LTR ERV1 46 1755 0 1462 285 114 9 chr6 2304178 2304809 -180110433 + MER20B DNA MER1_type 30 726 -57 2468 63 10 0 chr6 2304868 2305168 -180110074 - AluY SINE Alu -8 303 1 742 199 0 22 chr6 2306847 2306983 -180108259 + FLAM_C SINE Alu 1 133 0 30 0 0 0 chr6 2306984 2307014 -180108228 + AT_rich Low_complexity Low_complexity 1 30 0 303 323 81 37 chr6 2309069 2309230 -180106012 + MIR SINE MIR 13 180 -82 323 248 181 53 chr6 2310499 2310765 -180104477 + L2 LINE L2 2678 2977 -337 278 298 69 30 chr6 2310902 2311033 -180104209 + L2 LINE L2 3137 3272 0 606 273 207 19 chr6 2311212 2311531 -180103711 - L2 LINE L2 0 3313 2935 187 294 49 29 chr6 2312552 2312654 -180102588 - L2 LINE L2 -275 3038 2935 330 263 88 18 chr6 2315549 2315663 -180099579 - L2 LINE L2 -1 3271 3150 1086 219 35 0 chr6 2315665 2315866 -180099376 - MER3 DNA MER1_type 0 209 2 430 300 86 49 chr6 2316182 2316425 -180098817 - MIR SINE MIR 0 262 11 530 325 48 11 chr6 2316512 2316780 -180098462 + L2 LINE L2 2543 2820 -494 2358 92 3 0 chr6 2317124 2317419 -180097823 + AluSp SINE Alu 1 296 -17 626 210 150 18 chr6 2317784 2317951 -180097291 - MER5A DNA MER1_type 0 189 1 814 256 58 73 chr6 2318247 2318642 -180096600 - MLT1J LTR MaLR -86 425 37 329 140 0 0 chr6 2318782 2318832 -180096410 + L2 LINE L2 3223 3272 0 307 382 14 7 chr6 2319488 2319632 -180095610 - MIR3 SINE MIR -43 165 21 420 71 0 0 chr6 2320696 2320752 -180094490 + (CA)n Simple_repeat Simple_repeat 2 57 0 189 0 0 0 chr6 2320754 2320775 -180094467 + (TC)n Simple_repeat Simple_repeat 2 22 0 498 273 205 10 chr6 2321326 2321531 -180093711 + MIR SINE MIR 18 262 0 302 274 24 0 chr6 2321649 2321733 -180093509 + MLT1L LTR MaLR 191 276 -339 2184 135 148 13 chr6 2321943 2322320 -180092922 + MSTA LTR MaLR 1 428 0 198 0 0 0 chr6 2323855 2323877 -180091365 + (A)n Simple_repeat Simple_repeat 1 22 0 423 270 56 92 chr6 2324437 2324633 -180090609 + MIR SINE MIR 28 216 -46 1940 197 70 95 chr6 2325077 2325458 -180089784 + L1MC5 LINE L1 6738 7127 -834 2067 159 18 9 chr6 2325458 2325798 -180089444 - MER2 DNA MER2_type 0 344 2 1940 197 70 95 chr6 2325798 2325829 -180089413 + L1MC5 LINE L1 7127 7157 -804 820 204 0 0 chr6 2325829 2325961 -180089281 - FLAM_C SINE Alu 0 133 2 1940 197 70 95 chr6 2325961 2326384 -180088858 + L1MC5 LINE L1 7157 7515 -446 325 234 28 19 chr6 2326386 2326413 -180088829 + GA-rich Low_complexity Low_complexity 2 27 -82 2048 136 96 6 chr6 2326413 2326745 -180088497 - THE1B LTR MaLR -2 362 1 325 234 28 19 chr6 2326745 2326824 -180088418 + GA-rich Low_complexity Low_complexity 27 109 0 918 247 68 45 chr6 2326824 2327265 -180087977 + L1MC5 LINE L1 7475 7925 -36 525 214 0 0 chr6 2327730 2327819 -180087423 + FLAM_A SINE Alu 5 93 -49 22 94 0 0 chr6 2328495 2328559 -180086683 + AT_rich Low_complexity Low_complexity 1 64 0 26 0 0 0 chr6 2329797 2329823 -180085419 + AT_rich Low_complexity Low_complexity 1 26 0 275 296 68 0 chr6 2329923 2330011 -180085231 - MIR SINE MIR -85 177 84 939 179 6 0 chr6 2330099 2330261 -180084981 + FRAM SINE Alu 1 163 -13 638 206 269 36 chr6 2330601 2330854 -180084388 - MER5C DNA MER1_type 0 324 13 271 109 0 43 chr6 2330966 2330978 -180084264 - MER46A DNA MER2_type -82 154 145 566 181 93 7 chr6 2330978 2331117 -180084125 + Tigger4(Zombi) DNA MER2_type 1 155 -2576 * 5262 139 17 15 chr6 2331111 2331979 -180083263 + Tigger4(Zombi) DNA MER2_type 1862 2731 0 1269 212 42 72 chr6 2332045 2332352 -180082890 + AluJo SINE Alu 4 301 -1 2407 59 0 26 chr6 2332532 2332835 -180082407 - AluY SINE Alu -16 295 1 1686 156 99 47 chr6 2333935 2334247 -180080995 + MLT2D LTR ERVL 8 302 -112 279 0 0 0 chr6 2334247 2334278 -180080964 + (CAAT)n Simple_repeat Simple_repeat 2 32 0 1686 156 99 47 chr6 2334278 2334297 -180080945 + MLT2D LTR ERVL 302 319 -95 198 103 0 0 chr6 2334297 2334326 -180080916 + (TA)n Simple_repeat Simple_repeat 1 29 0 1686 156 99 47 chr6 2334326 2334377 -180080865 + MLT2D LTR ERVL 319 411 -3 684 318 180 23 chr6 2334527 2335354 -180079888 - L2 LINE L2 -559 2755 1799 556 214 225 11 chr6 2335962 2336144 -180079098 - MIR SINE MIR 0 262 42 1801 158 0 34 chr6 2336185 2336477 -180078765 + AluJb SINE Alu 1 311 0 199 103 0 0 chr6 2336477 2336506 -180078736 + (TAAA)n Simple_repeat Simple_repeat 3 172 0 216 135 0 0 chr6 2337153 2337190 -180078052 + (GAAAA)n Simple_repeat Simple_repeat 4 40 0 297 235 42 42 chr6 2338189 2338308 -180076934 + L1ME4a LINE L1 6001 6119 -2 185 105 0 26 chr6 2338331 2338369 -180076873 + (TA)n Simple_repeat Simple_repeat 2 38 0 1584 166 34 48 chr6 2340437 2340732 -180074510 + AluJo SINE Alu 1 291 -21 1509 198 0 20 chr6 2342423 2342721 -180072521 + AluJb SINE Alu 1 292 -20 256 214 207 35 chr6 2343735 2343880 -180071362 - LTR67 LTR ERVL -25 532 363 670 194 29 24 chr6 2344089 2344259 -180070983 + L1MB5 LINE L1 5941 6111 -63 874 206 75 20 chr6 2344532 2344685 -180070557 - MER58A DNA MER1_type -2207 213 45 1955 138 0 16 chr6 2344685 2344990 -180070252 + AluSx SINE Alu 1 300 -12 874 206 75 20 chr6 2344990 2345035 -180070207 - MER58A DNA MER1_type -2375 45 4 384 181 181 0 chr6 2345133 2345227 -180070015 - L2 LINE L2 -6 3307 3197 2125 82 0 4 chr6 2345512 2345779 -180069463 + AluSq SINE Alu 40 305 -8 2308 77 3 0 chr6 2346012 2346297 -180068945 + AluSp SINE Alu 22 307 -6 1518 196 26 22 chr6 2346671 2346982 -180068260 + AluJo SINE Alu 1 312 0 1808 227 57 41 chr6 2347052 2347563 -180067679 + LTR40a LTR ERVL 1 519 0 2307 106 0 0 chr6 2348667 2348969 -180066273 - AluSx SINE Alu -10 302 1 1288 146 77 49 chr6 2349253 2349499 -180065743 + AluJo SINE Alu 1 253 -59 484 111 81 0 chr6 2349901 2350000 -180065242 + L1MA5 LINE L1 6194 6300 0 2158 113 7 10 chr6 2350192 2350493 -180064749 + AluSx SINE Alu 1 300 -12 2281 78 0 45 chr6 2350835 2351144 -180064098 - AluY SINE Alu -16 295 1 987 154 13 0 chr6 2351621 2351777 -180063465 + AluSg/x SINE Alu 153 310 0 269 233 0 0 chr6 2351831 2351891 -180063351 + MIR SINE MIR 200 259 -3 1305 223 18 24 chr6 2352016 2352344 -180062898 + MSTB1-int LTR MaLR 471 796 -855 977 147 73 82 chr6 2352366 2352598 -180062644 + MSTB1-int LTR MaLR 1422 1651 0 2476 138 58 10 chr6 2352598 2353010 -180062232 + MSTB1 LTR MaLR 1 432 0 335 271 231 5 chr6 2353808 2354011 -180061231 + MIR SINE MIR 4 252 -10 1728 158 3 37 chr6 2354991 2355313 -180059929 - AluJo SINE Alu -1 311 1 491 247 140 5 chr6 2355350 2355536 -180059706 + MIR SINE MIR 51 261 -1 24 0 0 0 chr6 2356434 2356458 -180058784 + GC_rich Low_complexity Low_complexity 1 24 0 2434 76 0 3 chr6 2358097 2358398 -180056844 + AluSq SINE Alu 1 300 -13 1617 172 151 9 chr6 2358671 2359002 -180056240 - MLT1B LTR MaLR -10 380 3 1123 167 44 0 chr6 2359233 2359437 -180055805 + MER20 DNA MER1_type 6 218 -1 4318 181 35 27 chr6 2360091 2360930 -180054312 + MER21B LTR ERV1 10 854 -9 289 320 17 3 chr6 2360939 2361076 -180054166 - MIR SINE MIR -62 146 18 590 182 172 35 chr6 2361417 2361620 -180053622 - L1MD2 LINE L1 -11 6348 6118 1350 187 97 0 chr6 2361627 2361895 -180053347 - AluJb SINE Alu -18 294 1 822 151 0 22 chr6 2361902 2362041 -180053201 - AluJo SINE Alu -176 136 1 2039 189 72 72 chr6 2362041 2362233 -180053009 - L1MD2 LINE L1 -226 6133 5942 1637 181 29 0 chr6 2362233 2362509 -180052733 + AluJo SINE Alu 1 284 -28 2039 189 72 72 chr6 2362509 2362636 -180052606 - L1MD2 LINE L1 -417 5942 5816 2141 101 3 3 chr6 2362636 2362923 -180052319 - AluSx SINE Alu -25 287 1 712 268 60 40 chr6 2362923 2363173 -180052069 - L1MB8 LINE L1 -353 5825 5571 2039 189 72 72 chr6 2362923 2363141 -180052101 - L1MD2 LINE L1 -542 5817 5595 271 221 13 26 chr6 2363196 2363273 -180051969 + LTR33A LTR ERVL 446 521 -2 222 37 0 0 chr6 2363411 2363438 -180051804 + (T)n Simple_repeat Simple_repeat 1 27 0 2410 90 0 3 chr6 2363679 2363980 -180051262 - AluSp SINE Alu -13 300 1 1157 134 0 0 chr6 2364291 2364462 -180050780 - AluSx SINE Alu -4 308 138 572 114 0 0 chr6 2364462 2364541 -180050701 - AluSx SINE Alu -229 84 6 213 132 0 0 chr6 2364556 2364594 -180050648 + (T)n Simple_repeat Simple_repeat 1 38 0 438 276 0 24 chr6 2365825 2365952 -180049290 + MLT1L LTR MaLR 127 250 -365 1390 246 57 38 chr6 2366066 2366554 -180048688 - MLT1H1 LTR MaLR -83 472 7 1845 245 39 11 chr6 2366615 2367126 -180048116 - MLT1E LTR MaLR 0 593 1 773 232 40 119 chr6 2367141 2367649 -180047593 - MLT1H1 LTR MaLR -34 521 71 2557 77 3 0 chr6 2367868 2368180 -180047062 + AluSp SINE Alu 1 313 0 478 281 88 11 chr6 2368339 2368556 -180046686 + MLT1L LTR MaLR 263 605 -10 225 0 0 0 chr6 2368820 2368845 -180046397 + (T)n Simple_repeat Simple_repeat 1 25 0 960 186 155 75 chr6 2368866 2369215 -180046027 + MSTD LTR MaLR 1 377 -19 414 0 0 0 chr6 2369215 2369261 -180045981 + (CA)n Simple_repeat Simple_repeat 1 46 0 1885 216 42 13 chr6 2369428 2369882 -180045360 - MLT1C LTR MaLR 0 467 1 452 268 82 41 chr6 2370098 2370318 -180044924 - MIR SINE MIR -14 248 20 647 290 71 17 chr6 2370407 2370793 -180044449 - L1MC/D LINE L1 -743 5403 5188 1156 161 75 54 chr6 2370868 2371034 -180044208 - AluJo SINE Alu -15 297 121 207 0 0 0 chr6 2371034 2371057 -180044185 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 1156 161 75 54 chr6 2371057 2371170 -180044072 - AluJo SINE Alu -191 121 12 2278 118 0 7 chr6 2371463 2371767 -180043475 - AluSx SINE Alu -10 302 1 25 31 0 0 chr6 2372246 2372278 -180042964 + AT_rich Low_complexity Low_complexity 1 32 0 6337 195 30 23 chr6 2372281 2373629 -180041613 - L1MC1 LINE L1 0 6333 4957 231 36 0 0 chr6 2373629 2373657 -180041585 + (TTTTG)n Simple_repeat Simple_repeat 3 30 0 6337 195 30 23 chr6 2373657 2374882 -180040360 - L1MC1 LINE L1 -1376 4957 3742 678 222 15 0 chr6 2375078 2375213 -180040029 - MLT1G1 LTR MaLR 0 595 459 390 265 185 31 chr6 2375222 2375463 -180039779 - MLT1G1 LTR MaLR -196 346 98 * 973 195 5 30 chr6 2375445 2375645 -180039597 + MLT1B LTR MaLR 196 390 0 1232 174 121 19 chr6 2376493 2376757 -180038485 - MER21B LTR ERV1 -554 309 19 380 279 0 0 chr6 2376780 2376859 -180038383 - MER21B LTR ERV1 -773 90 12 22 0 0 0 chr6 2377762 2377784 -180037458 + AT_rich Low_complexity Low_complexity 1 22 0 207 0 0 0 chr6 2377957 2377980 -180037262 + (A)n Simple_repeat Simple_repeat 1 23 0 263 169 17 51 chr6 2378501 2378560 -180036682 - L2 LINE L2 0 3313 3257 1606 138 177 16 chr6 2379313 2379624 -180035618 + MSTA LTR MaLR 68 428 0 22 0 0 0 chr6 2381570 2381592 -180033650 + AT_rich Low_complexity Low_complexity 1 22 0 189 0 0 0 chr6 2381766 2381787 -180033455 + (A)n Simple_repeat Simple_repeat 1 21 0 263 169 17 51 chr6 2382308 2382367 -180032875 - L2 LINE L2 0 3313 3257 604 92 0 0 chr6 2382574 2382650 -180032592 + AluSq/x SINE Alu 36 111 -201 1442 267 246 5 chr6 2382699 2383186 -180032056 - L2 LINE L2 -1937 1377 1009 342 0 0 0 chr6 2383186 2383224 -180032018 + (TG)n Simple_repeat Simple_repeat 2 39 0 1442 267 246 5 chr6 2383224 2383628 -180031614 - L2 LINE L2 -2305 1009 271 301 221 240 10 chr6 2383632 2383736 -180031506 - MER5A DNA MER1_type -1 188 61 353 125 47 0 chr6 2383783 2383847 -180031395 - MER5A DNA MER1_type -118 71 5 631 238 63 0 chr6 2383850 2383993 -180031249 + MER33 DNA MER1_type 8 159 -165 1489 158 12 12 chr6 2383998 2384244 -180030998 + AluJo SINE Alu 5 250 -62 1536 192 38 23 chr6 2384264 2384608 -180030634 - MLT1A1 LTR MaLR -11 354 6 1927 156 0 14 chr6 2384627 2384915 -180030327 - AluJo SINE Alu -28 284 1 414 189 76 0 chr6 2384916 2385048 -180030194 + MER33 DNA MER1_type 204 345 -18 200 313 142 24 chr6 2385089 2385300 -180029942 - L2 LINE L2 -3037 277 42 747 229 16 0 chr6 2385301 2385484 -180029758 - MER114 LTR ERV -447 201 16 5048 135 19 37 chr6 2385579 2386466 -180028776 - MER4D LTR ERV1 0 872 2 569 279 31 12 chr6 2386891 2387052 -180028190 + MER41C LTR ERV1 1 164 -390 381 216 14 0 chr6 2387043 2387117 -180028125 + MER41D LTR ERV1 483 557 0 * 1220 168 0 0 chr6 2388673 2388846 -180026396 + FAM SINE Alu 1 173 -2 833 201 0 12 chr6 2390211 2390375 -180024867 + MER5B DNA MER1_type 17 178 0 632 243 18 41 chr6 2391134 2391362 -180023880 + L1ME2 LINE L1 5941 6166 0 321 285 59 32 chr6 2391391 2391577 -180023665 + L1MC4 LINE L1 7841 8031 -11 398 280 49 7 chr6 2391754 2391897 -180023345 - MIR SINE MIR -2 260 112 198 0 0 0 chr6 2391973 2391995 -180023247 + (T)n Simple_repeat Simple_repeat 1 22 0 301 143 0 20 chr6 2391995 2392044 -180023198 - MER5B DNA MER1_type -114 64 17 21 0 0 0 chr6 2392183 2392204 -180023038 + AT_rich Low_complexity Low_complexity 1 21 0 212 59 29 0 chr6 2392239 2392273 -180022969 + (TTTA)n Simple_repeat Simple_repeat 2 36 0 2119 75 0 0 chr6 2392275 2392529 -180022713 - AluY SINE Alu -31 280 27 * 2377 101 0 0 chr6 2392527 2392833 -180022409 - AluSx SINE Alu -6 306 1 2133 117 7 0 chr6 2392961 2393251 -180021991 - AluSx SINE Alu -20 292 1 8649 165 14 23 chr6 2393253 2393685 -180021557 - L1MA9 LINE L1 -61 6251 5817 2440 68 0 0 chr6 2393685 2393980 -180021262 - AluY SINE Alu 0 311 17 8649 165 14 23 chr6 2393980 2396092 -180019150 - L1MA9 LINE L1 -495 5817 3728 831 364 35 33 chr6 2397480 2398022 -180017220 - L2 LINE L2 -30 3242 2695 1808 140 0 53 chr6 2398028 2398176 -180017066 + AluSx SINE Alu 1 124 -188 2352 92 10 0 chr6 2398176 2398481 -180016761 + AluSp SINE Alu 1 308 -5 1808 140 0 53 chr6 2398481 2398653 -180016589 + AluSx SINE Alu 124 304 -8 23 0 0 0 chr6 2398727 2398750 -180016492 + AT_rich Low_complexity Low_complexity 1 23 0 950 272 100 69 chr6 2399391 2399830 -180015412 + L1MEc LINE L1 786 1210 -5186 2405 128 10 49 chr6 2399830 2400220 -180015022 - THE1C LTR MaLR 0 375 1 950 272 100 69 chr6 2400220 2400510 -180014732 + L1MEc LINE L1 1210 1490 -4906 754 197 31 0 chr6 2400510 2400637 -180014605 + FLAM_A SINE Alu 1 131 -2 950 272 100 69 chr6 2400637 2400906 -180014336 + L1MEc LINE L1 1490 1816 -4580 1141 274 133 9 chr6 2400962 2401611 -180013631 + L1MEc LINE L1 3198 3926 -2289 32620 107 14 59 chr6 2401617 2408063 -180007179 + L1PA7 LINE L1 12 6153 -1 6085 143 35 14 chr6 2408185 2409548 -180005694 + L1PB3 LINE L1 4186 5518 -705 1977 146 9 25 chr6 2409548 2409863 -180005379 - AluJo SINE Alu -2 310 1 6085 143 35 14 chr6 2409863 2409956 -180005286 + L1PB3 LINE L1 5518 5607 -616 1600 149 16 68 chr6 2409956 2410277 -180004965 + AluJb SINE Alu 3 306 -6 6085 143 35 14 chr6 2410277 2410820 -180004422 + L1PB3 LINE L1 5607 6223 0 2020 243 141 17 chr6 2410854 2411743 -180003499 + L1M4 LINE L1 4268 5266 -880 186 43 0 0 chr6 2412351 2412374 -180002868 + (T)n Simple_repeat Simple_repeat 1 23 0 1995 148 44 3 chr6 2412691 2413030 -180002212 - LTR35 LTR ERV1 0 618 266 1136 99 12 17 chr6 2413030 2413202 -180002040 + THE1C-int LTR MaLR 1410 1580 0 2231 104 6 47 chr6 2413202 2413567 -180001675 + THE1C LTR MaLR 1 350 -25 227 100 0 0 chr6 2413572 2413602 -180001640 + MER48 LTR ERV1 358 387 0 2227 191 90 44 chr6 2413623 2414140 -180001102 + MER31-int LTR ERV1 3266 3811 -1125 2421 148 13 82 chr6 2414140 2414593 -180000649 - MER61B LTR ERV1 -3 422 1 2227 191 90 44 chr6 2414593 2414620 -180000622 + MER31-int LTR ERV1 3811 3835 -1101 1269 150 0 162 chr6 2414620 2414979 -180000263 + AluSx SINE Alu 6 306 -6 939 164 26 9 chr6 2414987 2415163 -180000079 + MER31-int LTR ERV1 3861 4010 -926 19579 62 3 22 chr6 2415203 2418389 -179996853 + L1PA6 LINE L1 2974 6154 0 24424 74 3 5 chr6 2418394 2421458 -179993784 + HERVL-A1 LTR ERVL 1564 4620 -1034 31742 61 35 26 chr6 2421559 2426088 -179989154 - Harlequin LTR ERV1 -1684 5212 575 476 35 0 0 chr6 2426188 2426246 -179988996 + HERVL-A1 LTR ERVL 5597 5654 0 3335 68 57 9 chr6 2426246 2426629 -179988613 + MLT2A1 LTR ERVL 1 407 -37 243 0 0 0 chr6 2426629 2426656 -179988586 + (TA)n Simple_repeat Simple_repeat 2 28 0 3335 68 57 9 chr6 2426656 2426696 -179988546 + MLT2A1 LTR ERVL 407 444 0 838 221 111 23 chr6 2428540 2428556 -179986686 + MLT1J LTR MaLR 217 230 -281 2418 102 0 3 chr6 2428556 2428870 -179986372 - AluSq SINE Alu 0 313 1 838 221 111 23 chr6 2428870 2429070 -179986172 + MLT1J LTR MaLR 230 452 -59 557 184 75 48 chr6 2429161 2429297 -179985945 + MLT1A1 LTR MaLR 1 140 -225 1479 148 4 13 chr6 2429297 2429534 -179985708 - MER21B LTR ERV1 0 863 629 2010 166 73 34 chr6 2429534 2429974 -179985268 - LTR2B LTR ERV1 0 490 34 45379 64 20 15 chr6 2429988 2436774 -179978468 - Harlequin LTR ERV1 0 6896 1 2006 184 84 32 chr6 2436774 2437236 -179978006 - LTR2B LTR ERV1 0 490 5 * 3525 171 57 11 chr6 2437225 2437259 -179977983 - MER21B LTR ERV1 -225 638 607 207 0 0 0 chr6 2437259 2437282 -179977960 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 3525 171 57 11 chr6 2437282 2437857 -179977385 - MER21B LTR ERV1 -256 607 1 2241 167 30 16 chr6 2437939 2438378 -179976864 - MER21B-int LTR ERV1 -52 4139 3699 2113 184 100 107 chr6 2438382 2439219 -179976023 - LTR28 LTR ERV1 0 1020 109 400 239 254 0 chr6 2439231 2439373 -179975869 - LTR28 LTR ERV1 -842 178 1 3009 165 79 2 chr6 2439373 2439954 -179975288 - MER21B-int LTR ERV1 -494 3697 3072 9055 210 39 30 chr6 2440396 2442119 -179973123 - L1M4c LINE L1 -1167 5215 3509 2335 119 3 0 chr6 2442119 2442430 -179972812 - AluSx SINE Alu 0 312 1 9055 210 39 30 chr6 2442430 2443061 -179972181 - L1M4c LINE L1 -2873 3509 2885 2092 149 126 5 chr6 2443061 2443443 -179971799 + MSTA LTR MaLR 1 428 0 8941 177 29 1 chr6 2443443 2445049 -179970193 + MSTA-int LTR MaLR 1 1651 0 2046 147 126 11 chr6 2445049 2445431 -179969811 + MSTA LTR MaLR 1 426 -2 9055 210 39 30 chr6 2445431 2445795 -179969447 - L1M4c LINE L1 -3496 2886 2470 916 234 60 22 chr6 2445816 2446064 -179969178 - L1M4c LINE L1 -3916 2468 2231 500 30 0 15 chr6 2446064 2446131 -179969111 + (TA)n Simple_repeat Simple_repeat 2 67 0 2231 101 7 13 chr6 2446131 2446429 -179968813 - AluSp SINE Alu -17 296 1 916 234 60 22 chr6 2446429 2446543 -179968699 - L1M4c LINE L1 -4152 2232 2091 1831 258 30 25 chr6 2446713 2447356 -179967886 - L1M4c LINE L1 -4663 1721 1076 371 98 16 0 chr6 2447384 2447445 -179967797 + (TTCC)n Simple_repeat Simple_repeat 1 62 0 1972 158 10 0 chr6 2447445 2447749 -179967493 - AluSx SINE Alu -5 307 1 843 275 48 3 chr6 2447757 2447959 -179967283 - L1 LINE L1 -4813 1840 1616 267 31 0 0 chr6 2447959 2447991 -179967251 + (TTTTG)n Simple_repeat Simple_repeat 2 33 0 843 275 48 3 chr6 2447991 2448123 -179967119 - L1 LINE L1 -5037 1616 1491 246 345 11 0 chr6 2448402 2448489 -179966753 - L1 LINE L1 -5219 1434 1347 285 200 0 0 chr6 2449000 2449060 -179966182 + L1MC5 LINE L1 7345 7404 -557 891 234 10 5 chr6 2449368 2449577 -179965665 - MLT1C LTR MaLR 0 467 258 735 226 14 14 chr6 2449612 2449794 -179965448 - FRAM SINE Alu 0 182 1 1844 160 49 0 chr6 2449806 2450122 -179965120 - AluSx SINE Alu 0 312 6 662 218 71 0 chr6 2450126 2450296 -179964946 - MLT1C LTR MaLR -285 182 1 1586 111 0 5 chr6 2450389 2450596 -179964646 + AluSg/x SINE Alu 95 300 -10 1305 217 41 77 chr6 2451349 2451792 -179963450 + L1ME2 LINE L1 5555 5981 -183 311 143 32 0 chr6 2451842 2451905 -179963337 - L1PA13 LINE L1 0 6163 6099 378 295 75 20 chr6 2452397 2452692 -179962550 + L1MEd LINE L1 981 1291 -4914 234 207 207 11 chr6 2452859 2452946 -179962296 + HAL1 LINE L1 1500 1603 -904 1698 171 24 20 chr6 2453051 2453156 -179962086 + AluJo SINE Alu 6 109 -203 2142 129 36 38 chr6 2453156 2453521 -179961721 - THE1B LTR MaLR 0 364 1 1698 171 24 20 chr6 2453521 2453707 -179961535 + AluJo SINE Alu 109 298 -14 1564 173 32 160 chr6 2453962 2454523 -179960719 + LTR45B LTR ERV1 1 489 0 2409 95 0 0 chr6 2454572 2454919 -179960323 + L1PB1 LINE L1 5624 5970 -181 942 112 0 0 chr6 2454919 2455044 -179960198 + AluSq/x SINE Alu 1 125 -188 1247 116 5 11 chr6 2455050 2455239 -179960003 + L1PB1 LINE L1 5959 6146 -5 281 216 14 0 chr6 2455355 2455429 -179959813 - Charlie1 DNA MER1_type -506 2255 2181 390 245 73 55 chr6 2455477 2455804 -179959438 + L1MEd LINE L1 2120 2452 -3944 1208 149 6 0 chr6 2455816 2455991 -179959251 + AluSx SINE Alu 1 176 -136 619 224 22 22 chr6 2456016 2456199 -179959043 + L1ME3A LINE L1 5774 5956 -214 339 272 0 0 chr6 2456362 2456487 -179958755 + (TA)n Simple_repeat Simple_repeat 1 125 0 2334 160 54 69 chr6 2456490 2457085 -179958157 + L1MA5A LINE L1 1416 2001 -4788 576 187 0 0 chr6 2457086 2457209 -179958033 + GA-rich Low_complexity Low_complexity 3 125 0 2242 233 19 4 chr6 2457209 2457796 -179957446 + L1MA5A LINE L1 1987 2572 -4217 2350 88 109 21 chr6 2457797 2458183 -179957059 - MER4A LTR ERV1 0 664 245 8153 197 16 26 chr6 2458218 2458943 -179956299 + L1MA5A LINE L1 3388 4119 -2669 1978 132 0 7 chr6 2458943 2459215 -179956027 + AluSg SINE Alu 1 270 -40 8153 197 16 26 chr6 2459215 2460486 -179954756 + L1MA5A LINE L1 4119 5362 -1426 1523 195 85 13 chr6 2461641 2462030 -179953212 + L1MA5A LINE L1 5344 5760 -1028 732 74 11 0 chr6 2462035 2462130 -179953112 - AluSg/x SINE Alu -102 210 115 3819 126 23 16 chr6 2462253 2462332 -179952910 + L1MA5A LINE L1 5898 5975 -964 2166 135 0 0 chr6 2462332 2462628 -179952614 + AluSx SINE Alu 1 296 -16 3819 126 23 16 chr6 2462628 2463081 -179952161 + L1MA5A LINE L1 5975 6439 -500 432 0 0 0 chr6 2463081 2463129 -179952113 + (CA)n Simple_repeat Simple_repeat 2 49 0 3819 126 23 16 chr6 2463129 2463279 -179951963 + L1MA5A LINE L1 6439 6586 -353 373 75 25 88 chr6 2463275 2463297 -179951945 - L1MB4 LINE L1 -77 6103 6081 * 514 99 0 25 chr6 2463297 2463378 -179951864 - MADE1 DNA Mariner 0 80 2 373 75 25 88 chr6 2463378 2463435 -179951807 - L1MB4 LINE L1 -99 6081 6029 243 241 25 51 chr6 2463538 2463617 -179951625 - L2 LINE L2 0 3313 3237 * 292 243 14 0 chr6 2463614 2463684 -179951558 - MIR SINE MIR -3 259 189 270 244 38 28 chr6 2464245 2464363 -179950879 + MER5A DNA MER1_type 1 181 -8 2336 95 3 13 chr6 2464543 2464859 -179950383 - AluSq SINE Alu 0 313 1 300 247 54 11 chr6 2464871 2464964 -179950278 + MER58C DNA MER1_type 119 215 0 356 231 8 45 chr6 2465340 2465474 -179949768 - L1MC/D LINE L1 -2006 5802 5674 1866 157 11 55 chr6 2466049 2466091 -179949151 + MER89 LTR ERV1 195 237 -322 1800 140 11 18 chr6 2466091 2466376 -179948866 - AluJb SINE Alu -19 293 11 1866 157 11 55 chr6 2466376 2466715 -179948527 + MER89 LTR ERV1 237 559 0 428 167 78 29 chr6 2467007 2467109 -179948133 + MER89-int LTR ERV1 444 550 -6251 317 239 0 0 chr6 2467115 2467186 -179948056 + MER89-int LTR ERV1 520 590 -6211 * 1062 241 96 21 chr6 2467177 2467551 -179947691 + MER89-int LTR ERV1 878 1279 -5522 645 175 0 0 chr6 2467551 2467654 -179947588 + FLAM_C SINE Alu 16 118 -25 1042 212 8 115 chr6 2467680 2468081 -179947161 + MER89-int LTR ERV1 1274 1631 -5170 1832 248 77 64 chr6 2468146 2468915 -179946327 + MER89-int LTR ERV1 1650 2428 -4373 4149 143 18 28 chr6 2469206 2469462 -179945780 - L1PA16 LINE L1 0 6166 5909 1903 147 0 39 chr6 2469462 2469774 -179945468 + AluJb SINE Alu 1 300 -12 4149 143 18 28 chr6 2469774 2469916 -179945326 - L1PA16 LINE L1 -257 5909 5767 2172 75 3 10 chr6 2469916 2470232 -179945010 - AluY SINE Alu 0 311 1 4149 143 18 28 chr6 2470232 2470646 -179944596 - L1PA16 LINE L1 -399 5767 5361 509 229 9 9 chr6 2471639 2471757 -179943485 + MIR3 SINE MIR 69 187 -21 25 31 0 0 chr6 2472154 2472186 -179943056 + AT_rich Low_complexity Low_complexity 1 32 0 910 121 7 0 chr6 2472198 2472347 -179942895 + L1MA5A LINE L1 6146 6295 -2 487 224 74 20 chr6 2472800 2472991 -179942251 + MER58 DNA MER1_type 5 2417 -3 785 122 0 0 chr6 2474986 2475101 -179940141 - FLAM_C SINE Alu -17 116 2 2624 43 0 0 chr6 2475111 2475412 -179939830 - AluY SINE Alu -10 301 1 239 272 101 32 chr6 2475831 2475989 -179939253 + L2 LINE L2 2537 2705 -609 3997 162 34 28 chr6 2475991 2476036 -179939206 - L1MB4 LINE L1 -6 6174 6131 2401 92 0 3 chr6 2476036 2476342 -179938900 - AluSx SINE Alu -7 305 1 3997 162 34 28 chr6 2476342 2477190 -179938052 - L1MB4 LINE L1 -49 6131 5276 262 186 0 0 chr6 2477443 2477486 -179937756 - Alu SINE Alu -264 44 2 45 19 0 0 chr6 2527983 2528035 -179887207 + AT_rich Low_complexity Low_complexity 1 52 0 2725 18 16 0 chr6 2528035 2528435 -179886807 - L1PA4 LINE L1 -677 5478 5075 5972 21 6 0 chr6 2528435 2529113 -179886129 + L1PA4 LINE L1 5472 6154 -1 40 0 0 0 chr6 2529142 2529182 -179886060 + AT_rich Low_complexity Low_complexity 1 40 0 1051 260 9 0 chr6 2529414 2529633 -179885609 + MER58A DNA MER1_type 4 224 0 1143 158 164 75 chr6 2529882 2530217 -179885025 + MLT1A1 LTR MaLR 1 365 0 243 331 7 44 chr6 2530348 2530484 -179884758 - L2 LINE L2 -213 3059 2929 271 272 163 34 chr6 2531303 2531450 -179883792 + MIR3 SINE MIR 32 197 -11 356 211 56 7 chr6 2532483 2532625 -179882617 + (CA)n Simple_repeat Simple_repeat 2 150 0 327 131 54 15 chr6 2532664 2532794 -179882448 + (CA)n Simple_repeat Simple_repeat 2 136 0 473 208 46 17 chr6 2532836 2533009 -179882233 + (CA)n Simple_repeat Simple_repeat 2 179 0 1130 191 106 25 chr6 2533947 2534229 -179881013 - MER2 DNA MER2_type -28 317 13 425 198 10 0 chr6 2534529 2534630 -179880612 + GA-rich Low_complexity Low_complexity 3 104 0 305 198 293 0 chr6 2534630 2534746 -179880496 + MER103 DNA DNA 1 150 -16 207 0 0 0 chr6 2535749 2535772 -179879470 + (A)n Simple_repeat Simple_repeat 1 23 0 25 0 0 0 chr6 2536011 2536036 -179879206 + AT_rich Low_complexity Low_complexity 1 25 0 207 301 186 9 chr6 2536148 2536261 -179878981 + MIR3 SINE MIR 9 141 -67 343 309 32 0 chr6 2536732 2536858 -179878384 + L2 LINE L2 3182 3311 -2 2370 85 0 0 chr6 2537403 2537698 -179877544 + AluSc SINE Alu 1 295 -14 2228 122 0 6 chr6 2538044 2538355 -179876887 + AluSx SINE Alu 3 311 -1 1431 45 6 0 chr6 2540181 2540359 -179874883 - L1PA4 LINE L1 -3 6152 5974 392 171 14 0 chr6 2540603 2540673 -179874569 - MER82 DNA MER2_type 0 653 583 720 79 0 0 chr6 2540674 2540763 -179874479 - AluSq/x SINE Alu -204 109 21 555 107 19 10 chr6 2543244 2543254 -179871988 + (TCTA)n Simple_repeat Simple_repeat 1 9 -95 1422 224 120 41 chr6 2543254 2543719 -179871523 + MLT1D LTR MaLR 1 502 -3 555 107 19 10 chr6 2543719 2543811 -179871431 + (TCTA)n Simple_repeat Simple_repeat 9 104 0 2061 125 37 28 chr6 2543813 2544140 -179871102 + THE1B LTR MaLR 1 330 -34 396 271 13 12 chr6 2545370 2545689 -179869553 + (CA)n Simple_repeat Simple_repeat 1 319 0 257 251 0 123 chr6 2545869 2546040 -179869202 + MLT1K LTR MaLR 277 426 -162 211 200 0 0 chr6 2546054 2546089 -179869153 + polypurine Low_complexity Low_complexity 2 36 0 310 260 20 30 chr6 2546118 2546218 -179869024 + MLT1K LTR MaLR 472 570 -18 379 227 85 102 chr6 2546422 2546598 -179868644 - L2 LINE L2 -2 3311 3139 519 234 65 13 chr6 2546600 2546754 -179868488 + L1M4 LINE L1 5604 5765 -419 779 101 8 39 chr6 2547399 2547528 -179867714 - L1PA8 LINE L1 -1 6171 6047 190 270 90 45 chr6 2547625 2547736 -179867506 + L2 LINE L2 2928 3043 -229 313 294 87 0 chr6 2548224 2548350 -179866892 + L2 LINE L2 3136 3272 0 1954 141 77 0 chr6 2549243 2549556 -179865686 - MER1B DNA MER1_type 0 337 1 537 214 151 13 chr6 2549685 2549844 -179865398 + MER5A DNA MER1_type 4 184 -5 394 278 51 40 chr6 2549893 2550069 -179865173 + MIR SINE MIR 49 226 -36 277 293 281 0 chr6 2551873 2552040 -179863202 - MIR SINE MIR 0 262 49 243 259 214 0 chr6 2553142 2553273 -179861969 + MIR SINE MIR 48 206 -56 312 241 50 78 chr6 2554373 2554514 -179860728 - L2 LINE L2 0 3272 3136 332 310 120 0 chr6 2555277 2555377 -179859865 + MER81 DNA DNA 1 112 -2 252 288 91 0 chr6 2555397 2555529 -179859713 - MIR SINE MIR -62 200 57 1184 178 45 29 chr6 2555557 2555799 -179859443 - MLT1F1 LTR MaLR 0 567 322 15336 122 37 10 chr6 2556000 2556761 -179858481 + Tigger1 DNA MER2_type 1 740 -1678 2323 156 62 5 chr6 2556761 2557164 -179858078 - MSTB LTR MaLR 0 426 1 15336 122 37 10 chr6 2557164 2558755 -179856487 + Tigger1 DNA MER2_type 740 2418 0 2313 97 0 7 chr6 2558791 2559091 -179856151 + AluSx SINE Alu 1 298 -14 24 32 0 0 chr6 2559302 2559333 -179855909 + AT_rich Low_complexity Low_complexity 1 31 0 269 272 7 66 chr6 2559660 2559803 -179855439 + MIR SINE MIR 92 221 -41 205 176 0 20 chr6 2560518 2560569 -179854673 + L2 LINE L2 2228 2277 -1037 757 214 12 24 chr6 2560570 2560738 -179854504 + MER63B DNA MER1_type 2 167 -269 868 298 96 51 chr6 2560776 2561388 -179853854 + L2 LINE L2 2307 2953 -319 2135 119 0 0 chr6 2561388 2561681 -179853561 - AluSx SINE Alu -15 297 5 868 298 96 51 chr6 2561681 2561758 -179853484 + L2 LINE L2 2953 3025 -247 793 281 30 20 chr6 2561801 2562098 -179853144 - L1M3 LINE L1 -606 5577 5275 2116 107 78 29 chr6 2562098 2562445 -179852797 - THE1B LTR MaLR 0 364 1 793 281 30 20 chr6 2562445 2562571 -179852671 - L1M3 LINE L1 -908 5275 5152 793 251 121 57 chr6 2562642 2563343 -179851899 - L1MEd LINE L1 -4722 1588 820 1431 196 31 14 chr6 2563343 2563634 -179851608 + AluJo SINE Alu 1 296 -16 793 251 121 57 chr6 2563634 2563681 -179851561 - L1MEd LINE L1 -5490 820 777 507 17 0 0 chr6 2563696 2563756 -179851486 + (TCTA)n Simple_repeat Simple_repeat 2 61 0 300 345 84 35 chr6 2563851 2564054 -179851188 + LTR16A LTR ERVL 119 331 -119 298 282 243 24 chr6 2564226 2564282 -179850960 - L1MEd LINE L1 -5446 673 631 1230 203 93 32 chr6 2564282 2564627 -179850615 + MER47A DNA MER2_type 1 366 0 298 282 243 24 chr6 2564627 2564903 -179850339 - L1MEd LINE L1 -5488 631 268 1884 133 60 0 chr6 2565914 2566199 -179849043 - AluJb SINE Alu -10 302 1 872 144 8 0 chr6 2566201 2566333 -179848909 - AluJb SINE Alu -179 133 1 232 328 62 25 chr6 2566338 2566692 -179848550 - L2 LINE L2 -1611 1703 1337 616 224 92 6 chr6 2567228 2567402 -179847840 - MER5A DNA MER1_type 0 189 1 2255 106 0 0 chr6 2567757 2568049 -179847193 - AluSx SINE Alu -16 296 5 23 0 0 0 chr6 2568678 2568701 -179846541 + AT_rich Low_complexity Low_complexity 1 23 0 28 48 0 0 chr6 2569457 2569499 -179845743 + AT_rich Low_complexity Low_complexity 1 42 0 240 256 8 29 chr6 2569625 2569713 -179845529 + CT-rich Low_complexity Low_complexity 1 86 0 1800 166 10 3 chr6 2570077 2570372 -179844870 - AluJo SINE Alu -13 299 3 760 294 35 8 chr6 2572200 2572455 -179842787 - MIR SINE MIR 0 262 1 907 170 18 8 chr6 2572517 2572917 -179842325 + CT-rich Low_complexity Low_complexity 1 404 0 1008 165 62 0 chr6 2572928 2573104 -179842138 - AluJo SINE Alu -4 308 122 303 274 12 0 chr6 2573106 2573190 -179842052 + L1MC4 LINE L1 6608 6692 -1350 1499 165 44 0 chr6 2573200 2573449 -179841793 - AluJo SINE Alu -30 282 23 578 217 140 27 chr6 2573552 2573788 -179841454 + MLT1C LTR MaLR 147 425 -80 939 183 50 72 chr6 2573893 2574172 -179841070 - Charlie1 DNA MER1_type 0 2761 2489 44262 29 21 1 chr6 2574172 2580201 -179835041 - L1HS LINE L1 -3 6152 1 1443 203 34 6 chr6 2580204 2580554 -179834688 - Charlie1 DNA MER1_type -257 2504 2145 4812 171 21 19 chr6 2580564 2580607 -179834635 - L1MB3 LINE L1 -2 6181 6140 2271 94 17 3 chr6 2580607 2580904 -179834338 + AluSx SINE Alu 2 302 -10 4812 171 21 19 chr6 2580904 2581247 -179833995 - L1MB3 LINE L1 -43 6140 5799 297 51 0 0 chr6 2581247 2581286 -179833956 + (TG)n Simple_repeat Simple_repeat 2 40 0 4812 171 21 19 chr6 2581286 2582050 -179833192 - L1MB3 LINE L1 -384 5799 5027 1008 207 34 23 chr6 2582055 2582407 -179832835 - MLT1E LTR MaLR -124 453 9 221 153 143 102 chr6 2582414 2582512 -179832730 - L2 LINE L2 -597 2717 2616 235 274 32 0 chr6 2582545 2582607 -179832635 - L2 LINE L2 -9 3304 3241 2115 135 3 22 chr6 2582645 2583009 -179832233 - L1MA5 LINE L1 -6 6294 5938 925 157 7 0 chr6 2583011 2583164 -179832078 + L1MA5 LINE L1 5787 5940 -360 186 271 78 47 chr6 2584407 2584536 -179830706 - MER5A DNA MER1_type -2 187 55 * 202 310 70 10 chr6 2584437 2584537 -179830705 + MER5A DNA MER1_type 41 146 -43 2043 276 109 13 chr6 2584582 2585648 -179829594 - L2 LINE L2 -24 3289 1917 744 277 100 0 chr6 2585653 2585953 -179829289 - L2 LINE L2 -1622 1692 1363 495 330 75 4 chr6 2585960 2586199 -179829043 - L2 LINE L2 -2194 1120 865 213 39 0 0 chr6 2588016 2588042 -179827200 + (TA)n Simple_repeat Simple_repeat 2 27 0 1218 266 110 2 chr6 2588339 2588783 -179826459 + L1ME3 LINE L1 5659 6150 -12 361 266 243 54 chr6 2589926 2590404 -179824838 - MLT1K LTR MaLR -18 570 3 246 335 32 11 chr6 2590994 2591114 -179824128 + MIR3 SINE MIR 30 154 -54 357 273 41 67 chr6 2594441 2594635 -179820607 + L1MC5 LINE L1 7736 7924 -37 261 324 0 38 chr6 2594940 2595045 -179820197 + CT-rich Low_complexity Low_complexity 5 105 0 781 358 154 2 chr6 2595433 2595899 -179819343 + L3 LINE CR1 703 1239 -338 901 256 87 73 chr6 2596469 2596918 -179818324 + L1MDb LINE L1 782 1236 -5173 399 234 78 0 chr6 2596919 2597060 -179818182 + MER63 DNA MER1_type 910 1061 0 560 173 105 65 chr6 2599060 2599278 -179815964 + MER106B DNA MER1_type 10 1059 0 1814 144 47 3 chr6 2599433 2599732 -179815510 - AluSx SINE Alu 0 312 1 180 250 0 0 chr6 2600951 2600991 -179814251 + L2 LINE L2 3153 3192 -80 2392 65 0 0 chr6 2601019 2601313 -179813929 + AluY SINE Alu 1 294 -17 388 35 0 188 chr6 2601336 2601421 -179813821 - MADE1 DNA Mariner 0 80 12 889 250 100 109 chr6 2601799 2602232 -179813010 + MER110 LTR ERV1 80 484 -3 539 41 27 0 chr6 2602352 2602425 -179812817 + (TTTC)n Simple_repeat Simple_repeat 2 76 0 21 0 0 0 chr6 2602439 2602460 -179812782 + AT_rich Low_complexity Low_complexity 1 21 0 1651 167 32 3 chr6 2602471 2602753 -179812489 + AluJb SINE Alu 1 290 -22 4721 148 14 3 chr6 2602833 2603609 -179811633 - L1MA7 LINE L1 0 6291 5507 998 186 5 0 chr6 2604322 2604510 -179810732 + MER53 DNA DNA 1 189 0 267 329 0 0 chr6 2605952 2606025 -179809217 - MIR3 SINE MIR -17 191 119 562 279 129 49 chr6 2608044 2608470 -179806772 - L2 LINE L2 0 3272 2813 464 135 0 0 chr6 2609022 2609096 -179806146 - L1MB8 LINE L1 -11 6167 6094 2110 106 7 3 chr6 2609131 2609424 -179805818 - AluSx SINE Alu -18 294 1 4362 178 21 22 chr6 2609426 2610398 -179804844 - L1MB4 LINE L1 -42 6138 5170 942 228 61 58 chr6 2611191 2611603 -179803639 - L1MC5 LINE L1 -30 7931 7519 26 0 0 0 chr6 2612305 2612331 -179802911 + AT_rich Low_complexity Low_complexity 1 26 0 1735 173 38 20 chr6 2613078 2613425 -179801817 - L1MC1 LINE L1 0 6333 5981 1243 157 175 92 chr6 2613427 2613591 -179801651 - LTR54B LTR ERV1 -2 496 347 2231 97 7 0 chr6 2613591 2613899 -179801343 - AluSq SINE Alu -3 310 1 1243 157 175 92 chr6 2613899 2614192 -179801050 - LTR54B LTR ERV1 -151 347 1 213 39 0 0 chr6 2614419 2614445 -179800797 + (A)n Simple_repeat Simple_repeat 1 26 0 22 0 0 0 chr6 2614604 2614626 -179800616 + AT_rich Low_complexity Low_complexity 1 22 0 221 116 0 23 chr6 2615012 2615055 -179800187 + (GGAGAA)n Simple_repeat Simple_repeat 1 42 0 344 309 73 0 chr6 2616226 2616362 -179798880 + MER117 DNA MER1_type 4 149 -48 1744 100 61 0 chr6 2617949 2618210 -179797032 + AluSg SINE Alu 1 277 -33 198 0 0 0 chr6 2618212 2618234 -179797008 + (TAAA)n Simple_repeat Simple_repeat 2 23 0 564 286 128 30 chr6 2619392 2619797 -179795445 + LTR16B LTR ERVL 20 464 0 2081 109 0 3 chr6 2620097 2620391 -179794851 - AluSc SINE Alu -16 293 1 310 268 116 27 chr6 2620739 2620851 -179794391 - MIR SINE MIR -37 225 104 1900 99 70 0 chr6 2621574 2621858 -179793384 - AluSx SINE Alu -8 304 1 2251 80 3 0 chr6 2622140 2622429 -179792813 - AluSp SINE Alu -23 290 1 424 263 67 59 chr6 2622535 2622805 -179792437 - L1MC1 LINE L1 -2036 5772 5501 1991 202 74 41 chr6 2622997 2623536 -179791706 - MER74A LTR ERVL 0 558 2 363 199 22 33 chr6 2624634 2624815 -179790427 + GA-rich Low_complexity Low_complexity 1 179 0 748 254 33 8 chr6 2624918 2625158 -179790084 + MLT1C LTR MaLR 210 455 -12 1479 292 71 9 chr6 2625901 2626452 -179788790 + L1ME3A LINE L1 5545 6129 -41 279 347 76 0 chr6 2626828 2626972 -179788270 - LTR33 LTR ERVL -193 328 174 1838 141 0 7 chr6 2627413 2627710 -179787532 + AluJo SINE Alu 4 298 -14 2002 126 0 10 chr6 2628392 2628701 -179786541 + AluSc SINE Alu 1 306 -3 239 323 72 4 chr6 2631641 2631777 -179783465 + MIR SINE MIR 50 193 -32 444 309 33 0 chr6 2632859 2633011 -179782231 - MIR SINE MIR -58 204 48 920 196 42 8 chr6 2633026 2633311 -179781931 + MER58 DNA MER1_type 2 2407 -13 781 195 50 6 chr6 2633335 2633494 -179781748 - MER5A DNA MER1_type -22 167 2 4925 107 74 39 chr6 2635132 2635455 -179779787 - LTR12 LTR ERV1 0 826 516 1472 117 4 9 chr6 2635455 2635686 -179779556 + AluY SINE Alu 81 310 -1 4925 107 74 39 chr6 2635686 2636160 -179779082 - LTR12 LTR ERV1 -310 516 1 2070 118 7 0 chr6 2636395 2636700 -179778542 + AluSx SINE Alu 1 307 -5 340 303 22 0 chr6 2637192 2637281 -179777961 - MIR3 SINE MIR -21 187 97 1749 203 68 6 chr6 2637343 2637825 -179777417 - MER69 DNA AcHobo -2 2524 2010 893 261 89 7 chr6 2637823 2638103 -179777139 - MER69 DNA AcHobo -658 568 266 * 439 297 134 25 chr6 2638562 2638882 -179776360 + L1MEd LINE L1 807 1161 -4958 3450 182 37 17 chr6 2638903 2639550 -179775692 - MER21B LTR ERV1 -1 862 203 725 191 86 129 chr6 2639695 2639951 -179775291 - MER21B LTR ERV1 -618 245 1 2169 234 55 32 chr6 2639966 2640332 -179774910 - MER69 DNA AcHobo -127 2399 2043 2903 203 56 26 chr6 2640332 2641030 -179774212 + MER72 LTR ERV1 1 719 -3 2169 234 55 32 chr6 2641030 2641579 -179773663 - MER69 DNA AcHobo -483 2043 1451 1253 252 85 85 chr6 2641691 2642207 -179773035 - MER69 DNA AcHobo -707 519 4 531 251 95 45 chr6 2642296 2642475 -179772767 + Charlie2 DNA MER1_type 144 331 -2451 992 246 68 0 chr6 2642486 2642766 -179772476 + Charlie2 DNA MER1_type 1906 2204 -658 579 257 67 9 chr6 2642854 2643064 -179772178 + LTR37A LTR ERV1 46 267 -159 233 200 33 0 chr6 2643085 2643145 -179772097 + (TG)n Simple_repeat Simple_repeat 2 63 0 297 219 0 0 chr6 2644469 2644542 -179770700 + (CA)n Simple_repeat Simple_repeat 1 73 0 2155 109 33 3 chr6 2644736 2645039 -179770203 - AluSx SINE Alu 0 312 1 670 285 45 5 chr6 2645140 2645340 -179769902 + MER63A DNA MER1_type 2 209 -1 190 227 0 23 chr6 2645721 2645765 -179769477 - L3b LINE CR1 -13 1570 1528 255 268 130 71 chr6 2645967 2646236 -179769006 - MER20B DNA MER1_type -209 574 290 4154 264 39 37 chr6 2646348 2647451 -179767791 + L1M4 LINE L1 2922 4032 -2114 1800 135 8 0 chr6 2647451 2647717 -179767525 - AluSq SINE Alu -45 268 1 4154 264 39 37 chr6 2647717 2648262 -179766980 + L1M4 LINE L1 4032 4574 -1572 231 211 105 0 chr6 2648337 2648394 -179766848 + MLT1D LTR MaLR 28 90 -415 1063 104 0 0 chr6 2648395 2648530 -179766712 + AluSq/x SINE Alu 1 135 -177 7236 162 21 41 chr6 2648530 2649931 -179765311 + L1MC3 LINE L1 6411 7784 -1 839 56 39 39 chr6 2650093 2650273 -179764969 + (TCTA)n Simple_repeat Simple_repeat 1 180 0 2045 163 115 46 chr6 2650689 2651210 -179764032 + LTR31 LTR ERV1 60 616 -3 1057 244 238 18 chr6 2651401 2651959 -179763283 - L2 LINE L2 -752 2562 1882 465 246 109 58 chr6 2652294 2652623 -179762619 - L1ME4a LINE L1 -6 6115 5770 565 293 63 10 chr6 2652881 2653086 -179762156 + MIR SINE MIR 5 220 -42 228 67 0 0 chr6 2653137 2653167 -179762075 + (TC)n Simple_repeat Simple_repeat 1 30 0 249 57 0 0 chr6 2653172 2653207 -179762035 + (CA)n Simple_repeat Simple_repeat 1 35 0 1772 180 31 0 chr6 2653207 2653495 -179761747 - AluJb SINE Alu -15 297 1 1964 173 17 0 chr6 2654236 2654588 -179760654 + MLT1B LTR MaLR 9 366 -24 4054 164 37 8 chr6 2654669 2655371 -179759871 + MER72 LTR ERV1 1 722 0 724 219 77 20 chr6 2655781 2655896 -179759346 + MER3 DNA MER1_type 3 135 -74 2309 144 25 0 chr6 2655896 2656251 -179758991 - THE1B LTR MaLR 0 364 1 724 219 77 20 chr6 2656251 2656331 -179758911 + MER3 DNA MER1_type 135 209 0 2279 117 0 0 chr6 2656942 2657251 -179757991 + AluSx SINE Alu 1 309 -3 337 168 262 40 chr6 2657285 2657434 -179757808 - MER53 DNA DNA -3 186 5 223 295 64 0 chr6 2657721 2657799 -179757443 + L2 LINE L2 3196 3278 -35 2520 198 30 85 chr6 2659614 2660345 -179754897 + LTR8 LTR ERV1 1 691 0 237 314 38 60 chr6 2660390 2660575 -179754667 + L2 LINE L2 2926 3106 -166 219 330 0 0 chr6 2660641 2660729 -179754513 + (CATA)n Simple_repeat Simple_repeat 1 88 0 189 189 0 0 chr6 2660792 2660829 -179754413 + L2 LINE L2 3274 3310 -3 333 205 219 53 chr6 2662215 2662366 -179752876 + MER5A DNA MER1_type 14 189 0 2183 111 0 0 chr6 2662858 2663146 -179752096 + AluSx SINE Alu 5 292 -20 187 347 32 11 chr6 2663328 2663423 -179751819 + L2 LINE L2 3208 3304 -9 685 211 0 0 chr6 2663865 2664006 -179751236 - FLAM_A SINE Alu 0 144 4 1104 136 65 5 chr6 2664170 2664354 -179750888 - AluSg/x SINE Alu -4 308 114 869 81 37 17 chr6 2664486 2664719 -179750523 + (TCTA)n Simple_repeat Simple_repeat 1 416 0 2480 154 78 83 chr6 2665114 2665677 -179749565 + LTR31 LTR ERV1 60 619 0 231 119 24 24 chr6 2665681 2665723 -179749519 - MER63A DNA MER1_type -166 44 3 360 316 65 26 chr6 2665796 2665861 -179749381 + L2 LINE L2 2684 2745 -569 2021 122 40 3 chr6 2665861 2666157 -179749085 + AluSc SINE Alu 1 307 -2 360 316 65 26 chr6 2666157 2666246 -179748996 + L2 LINE L2 2745 2844 -470 392 194 14 0 chr6 2666351 2666423 -179748819 - MER81 DNA DNA -20 94 22 234 301 87 10 chr6 2666679 2666782 -179748460 + L2 LINE L2 3162 3272 0 291 229 97 69 chr6 2668543 2668718 -179746524 - MER117 DNA MER1_type -17 180 1 866 211 78 0 chr6 2670307 2670511 -179744731 - MER58A DNA MER1_type -4 220 1 376 262 170 7 chr6 2672955 2673096 -179742146 - MIR SINE MIR -11 251 88 306 313 21 0 chr6 2673353 2673449 -179741793 + (CA)n Simple_repeat Simple_repeat 1 98 0 740 191 59 0 chr6 2673763 2673899 -179741343 - FRAM SINE Alu -11 165 22 250 304 60 60 chr6 2674378 2674546 -179740696 + MER5B DNA MER1_type 4 171 -7 2016 120 0 24 chr6 2674557 2674848 -179740394 + AluSx SINE Alu 1 284 -28 342 0 0 0 chr6 2675494 2675532 -179739710 + (A)n Simple_repeat Simple_repeat 1 38 0 2268 90 7 3 chr6 2677123 2677413 -179737829 - AluSg SINE Alu -19 291 1 392 220 22 0 chr6 2677930 2678021 -179737221 + L1ME4a LINE L1 5636 5728 -393 250 297 152 51 chr6 2678077 2678232 -179737010 + L1ME4a LINE L1 5819 5957 -164 1878 134 43 7 chr6 2678232 2678531 -179736711 + AluSq SINE Alu 1 310 -3 250 297 152 51 chr6 2678531 2678631 -179736611 + L1ME4a LINE L1 5957 6100 -21 686 211 0 0 chr6 2678695 2678834 -179736408 + FLAM_A SINE Alu 4 142 0 248 316 31 10 chr6 2680114 2680212 -179735030 - L2 LINE L2 -201 3071 2972 300 53 0 0 chr6 2680428 2680466 -179734776 + (TG)n Simple_repeat Simple_repeat 1 38 0 315 172 0 115 chr6 2680614 2680701 -179734541 - Tigger5 DNA MER2_type 0 2323 2247 277 129 233 5 chr6 2680702 2680816 -179734426 - Tigger5 DNA MER2_type -2130 193 1 41 48 0 0 chr6 2681200 2681262 -179733980 + AT_rich Low_complexity Low_complexity 1 62 0 1370 194 93 14 chr6 2681265 2681495 -179733747 + AluJo SINE Alu 1 258 -54 2042 152 123 5 chr6 2681495 2681876 -179733366 - MSTA LTR MaLR 0 428 3 1370 194 93 14 chr6 2681876 2681924 -179733318 + AluJo SINE Alu 258 301 -11 921 105 7 56 chr6 2681939 2682082 -179733160 + FRAM SINE Alu 10 145 -31 1563 156 9 83 chr6 2682563 2682890 -179732352 - AluJo SINE Alu -9 303 1 1696 102 9 0 chr6 2683461 2683687 -179731555 - AluSc SINE Alu -2 307 80 713 140 0 129 chr6 2683950 2683985 -179731257 - L1MB3 LINE L1 -15 6168 6130 880 204 0 6 chr6 2683985 2684142 -179731100 - FRAM SINE Alu -9 157 2 713 140 0 129 chr6 2684142 2684284 -179730958 - L1MB3 LINE L1 -53 6130 6014 354 243 32 32 chr6 2685808 2685936 -179729306 - MIR SINE MIR -55 153 43 225 235 0 42 chr6 2687050 2687216 -179728026 + C-rich Low_complexity Low_complexity 3 161 0 227 350 10 19 chr6 2687349 2687452 -179727790 - MIR SINE MIR -156 106 5 476 229 122 64 chr6 2687710 2688037 -179727205 + L1ME4a LINE L1 5770 6115 -6 836 287 130 5 chr6 2688372 2688780 -179726462 + L2 LINE L2 1882 2340 -974 318 50 0 0 chr6 2688786 2688826 -179726416 + (CA)n Simple_repeat Simple_repeat 1 40 0 370 115 0 0 chr6 2688839 2688891 -179726351 + MER58 DNA MER1_type 2357 2408 -12 2431 271 184 20 chr6 2689056 2690581 -179724661 - L2 LINE L2 0 3313 1530 254 208 292 10 chr6 2690581 2690677 -179724565 + MER34 LTR ERV1 1 123 -419 278 146 110 98 chr6 2690749 2690831 -179724411 + MER39 LTR ERV1 380 462 -245 1682 113 4 0 chr6 2690831 2691060 -179724182 + AluSg/x SINE Alu 66 295 -15 919 177 17 17 chr6 2691130 2691311 -179723931 - L1MB3 LINE L1 0 6183 6003 491 224 26 0 chr6 2692443 2692559 -179722683 - MIR SINE MIR 0 262 144 1309 187 85 40 chr6 2692590 2692916 -179722326 + L1MB7 LINE L1 5833 6174 -10 1131 256 155 5 chr6 2693339 2693764 -179721478 + LTR50 LTR ERVL 31 519 -276 1722 175 75 24 chr6 2693784 2694156 -179721086 + MLT1C LTR MaLR 3 393 -74 2880 155 41 2 chr6 2694192 2694336 -179720906 - L1MA9 LINE L1 0 6312 6175 306 0 0 0 chr6 2694336 2694370 -179720872 + (TG)n Simple_repeat Simple_repeat 2 35 0 2880 155 41 2 chr6 2694370 2694734 -179720508 - L1MA9 LINE L1 -137 6175 5784 331 121 0 52 chr6 2694743 2694801 -179720441 - Alu SINE Alu -2 300 246 418 219 0 10 chr6 2694801 2694897 -179720345 - L1 LINE L1 -1397 4749 4655 799 155 20 37 chr6 2695002 2695198 -179720044 + L1M2 LINE L1 5218 5418 -766 279 109 0 0 chr6 2695213 2695259 -179719983 + L1M2 LINE L1 5388 5433 -864 374 280 98 8 chr6 2695300 2695432 -179719810 - MIR SINE MIR -118 144 1 823 303 0 5 chr6 2695599 2695817 -179719425 - LTR16B LTR ERVL -214 250 34 1136 189 78 66 chr6 2695957 2696377 -179718865 + MLT2B1 LTR ERVL 1 414 0 554 311 51 26 chr6 2696717 2697073 -179718169 - HERV16 LTR ERVL -619 4563 4010 801 273 104 30 chr6 2697386 2698108 -179717134 - HERV16 LTR ERVL -1347 3649 3135 1331 298 74 32 chr6 2698195 2698759 -179716483 - HERV16 LTR ERVL -2059 2937 2417 239 333 11 0 chr6 2699773 2699863 -179715379 - MIR3 SINE MIR -3 205 115 278 138 108 0 chr6 2700083 2700148 -179715094 + MIR3 SINE MIR 135 206 -2 1818 255 82 41 chr6 2700654 2700976 -179714266 + L1MC4a LINE L1 5281 5588 -2220 2317 86 3 7 chr6 2700976 2701278 -179713964 + AluY SINE Alu 1 301 -10 1818 255 82 41 chr6 2701278 2701676 -179713566 + L1MC4a LINE L1 5588 6044 -1764 2030 134 82 26 chr6 2701676 2702027 -179713215 - L1PA16 LINE L1 -8 6158 5783 2101 150 0 0 chr6 2702027 2702334 -179712908 - AluSx SINE Alu -5 307 1 2030 134 82 26 chr6 2702334 2702362 -179712880 - L1PA16 LINE L1 -383 5783 5758 1818 255 82 41 chr6 2702362 2702490 -179712752 + L1MC4a LINE L1 6044 6165 -1643 489 237 183 6 chr6 2702785 2702954 -179712288 + L2 LINE L2 2611 2809 -505 343 239 186 9 chr6 2702990 2703103 -179712139 + LTR41 LTR ERVL 30 162 -611 203 357 0 0 chr6 2703498 2703568 -179711674 - L3 LINE CR1 -1302 275 206 335 312 88 58 chr6 2705030 2705428 -179709814 + L1M4 LINE L1 2431 2853 -3293 2272 124 0 0 chr6 2705428 2705734 -179709508 + AluSx SINE Alu 1 306 -6 335 312 88 58 chr6 2705734 2705905 -179709337 + L1M4 LINE L1 2853 3017 -3129 611 174 0 0 chr6 2706272 2706381 -179708861 + L1MA9 LINE L1 6204 6312 0 531 153 0 0 chr6 2709827 2709912 -179705330 - FLAM SINE Alu -19 124 40 2421 71 0 3 chr6 2711556 2711853 -179703389 + AluY SINE Alu 1 296 -15 245 216 80 23 chr6 2712081 2712169 -179703073 - MLT1L LTR MaLR -2 613 521 403 273 22 43 chr6 2712198 2712337 -179702905 - MLT1J LTR MaLR -150 361 226 726 203 52 123 chr6 2712981 2713281 -179701961 - L1ME2 LINE L1 -10 6154 5881 887 120 38 0 chr6 2713281 2713414 -179701828 - L1MA2 LINE L1 0 6304 6167 726 203 52 123 chr6 2713414 2713462 -179701780 - L1ME2 LINE L1 -283 5881 5831 2166 115 0 13 chr6 2715009 2715313 -179699929 - AluSx SINE Alu -12 300 1 630 269 42 0 chr6 2715621 2715788 -179699454 + MIR SINE MIR 41 214 -48 313 263 23 83 chr6 2717203 2717336 -179697906 + MIR SINE MIR 58 182 -80 1062 185 30 5 chr6 2718823 2719023 -179696219 - MER58B DNA MER1_type -8 333 129 23 33 0 0 chr6 2719301 2719331 -179695911 + AT_rich Low_complexity Low_complexity 1 30 0 277 269 9 56 chr6 2719561 2719669 -179695573 + LTR33 LTR ERVL 1 103 -418 1047 189 0 0 chr6 2720118 2720293 -179694949 - FAM SINE Alu 0 175 1 269 324 22 0 chr6 2720427 2720566 -179694676 - L1MDa LINE L1 -1945 4595 4454 417 262 72 51 chr6 2720583 2720820 -179694422 - L1MDa LINE L1 -2170 4370 4129 2405 87 3 0 chr6 2721973 2722271 -179692971 + AluSp SINE Alu 1 299 -14 7213 218 49 26 chr6 2722401 2725104 -179690138 - L1MDa LINE L1 -2710 3830 719 2454 83 3 0 chr6 2725104 2725406 -179689836 - AluSp SINE Alu -10 303 1 7213 218 49 26 chr6 2725406 2726125 -179689117 - L1MDa LINE L1 -5821 719 18 341 215 87 132 chr6 2726352 2726617 -179688625 - L1ME4a LINE L1 -246 5875 5623 984 169 7 0 chr6 2726847 2727001 -179688241 - FRAM SINE Alu -25 151 1 736 11 21 0 chr6 2727151 2727244 -179687998 + (GAAA)n Simple_repeat Simple_repeat 2 96 0 1189 208 186 12 chr6 2727748 2728162 -179687080 - LTR54B LTR ERV1 -10 488 3 194 241 181 0 chr6 2728937 2729053 -179686189 + L2 LINE L2 2251 2387 -927 505 287 5 37 chr6 2729753 2729941 -179685301 + MIR SINE MIR 78 259 -3 385 145 0 29 chr6 2731539 2731608 -179683634 - Tigger2 DNA MER2_type -1518 1200 1134 4713 129 93 13 chr6 2731632 2732385 -179682857 - L1MA5A LINE L1 -3 6294 5464 255 114 0 0 chr6 2732385 2732429 -179682813 + (TTTG)n Simple_repeat Simple_repeat 1 44 0 4713 129 93 13 chr6 2732429 2732528 -179682714 - L1MA5A LINE L1 -833 5464 5374 * 15846 192 57 10 chr6 2732522 2732903 -179682339 - L1PB1 LINE L1 -4 6863 6502 240 86 0 0 chr6 2732903 2732938 -179682304 + (CA)n Simple_repeat Simple_repeat 2 36 0 15846 192 57 10 chr6 2732938 2734315 -179680927 - L1PB1 LINE L1 -365 6502 5192 189 0 0 0 chr6 2734315 2734336 -179680906 + (TTTTA)n Simple_repeat Simple_repeat 2 22 0 15846 192 57 10 chr6 2734336 2739126 -179676116 - L1PB1 LINE L1 -1675 5192 6 2171 184 38 0 chr6 2739134 2739580 -179675662 - L1MA5A LINE L1 -752 5394 4932 30 0 0 0 chr6 2740505 2740535 -179674707 + AT_rich Low_complexity Low_complexity 1 30 0 340 257 23 17 chr6 2740603 2740778 -179674464 + (TATAA)n Simple_repeat Simple_repeat 4 179 0 683 271 33 38 chr6 2740793 2741033 -179674209 + LTR16A LTR ERVL 54 292 -158 1113 314 58 12 chr6 2741514 2742030 -179673212 + HERV16 LTR ERVL 395 934 -4062 767 301 39 12 chr6 2742115 2742447 -179672795 + HERV16 LTR ERVL 1081 1421 -3575 2435 297 55 23 chr6 2742549 2742664 -179672578 + HERV16 LTR ERVL 1613 1723 -3781 2051 140 0 31 chr6 2742664 2742985 -179672257 + AluJo SINE Alu 1 311 -1 2125 111 0 0 chr6 2742987 2743276 -179671966 + AluSx SINE Alu 3 291 -21 2435 297 55 23 chr6 2743276 2744479 -179670763 + HERV16 LTR ERVL 1723 3008 -2496 1026 217 74 106 chr6 2744492 2745004 -179670238 - MLT1D LTR MaLR -1 504 5 451 313 116 52 chr6 2745070 2745649 -179669593 + HERV16 LTR ERVL 3163 3778 -1986 847 186 96 0 chr6 2745867 2746055 -179669187 - MER20 DNA MER1_type -13 206 1 191 244 100 67 chr6 2746360 2746450 -179668792 - L2 LINE L2 -1 3271 3179 545 193 88 64 chr6 2746453 2746531 -179668711 - MER45A DNA AcHobo -1403 178 103 2212 104 0 0 chr6 2746531 2746828 -179668414 + AluSx SINE Alu 11 307 -5 545 193 88 64 chr6 2746828 2746920 -179668322 - MER45A DNA AcHobo -1478 103 4 238 261 228 0 chr6 2747469 2747561 -179667681 + MIR SINE MIR 32 144 -64 396 0 0 0 chr6 2747730 2747774 -179667468 + (TG)n Simple_repeat Simple_repeat 1 44 0 1758 157 77 65 chr6 2748532 2748577 -179666665 - MLT2D LTR ERVL -3 411 368 198 0 0 0 chr6 2748577 2748599 -179666643 + (TC)n Simple_repeat Simple_repeat 2 23 0 1758 157 77 65 chr6 2748599 2748955 -179666287 - MLT2D LTR ERVL -46 368 5 410 232 172 0 chr6 2749333 2749484 -179665758 + MLT1I LTR MaLR 2 178 -231 1822 189 34 11 chr6 2749848 2750203 -179665039 + MLT1A1 LTR MaLR 1 363 -2 367 317 87 6 chr6 2750704 2750887 -179664355 + L1MC2 LINE L1 3917 4114 -2032 535 269 56 121 chr6 2751052 2751207 -179664035 + L1MC2 LINE L1 4340 4503 -1643 2160 113 0 0 chr6 2751207 2751509 -179663733 - AluSx SINE Alu -10 302 1 535 269 56 121 chr6 2751509 2751899 -179663343 + L1MC2 LINE L1 4503 4856 -1290 236 287 108 6 chr6 2751924 2752081 -179663161 + L1P LINE L1 4875 5047 -1099 831 143 0 0 chr6 2752753 2752886 -179662356 - AluSg/x SINE Alu -1 311 179 206 268 28 0 chr6 2752886 2752957 -179662285 - L2 LINE L2 -45 3227 3155 2457 50 0 0 chr6 2753113 2753413 -179661829 + AluY SINE Alu 1 300 -11 941 122 11 17 chr6 2754047 2754228 -179661014 + (GAAA)n Simple_repeat Simple_repeat 1 180 0 385 187 0 37 chr6 2754271 2754378 -179660864 + GA-rich Low_complexity Low_complexity 2 104 0 686 298 67 76 chr6 2756737 2756970 -179658272 + L1MC2 LINE L1 5309 5537 -635 2031 103 0 0 chr6 2756970 2757243 -179657999 + AluSc SINE Alu 30 302 -7 686 298 67 76 chr6 2757243 2757369 -179657873 + L1MC2 LINE L1 5537 5663 -509 318 246 27 27 chr6 2757395 2757505 -179657737 - MLT1F1 LTR MaLR -434 133 24 661 156 14 7 chr6 2757505 2757646 -179657596 - L1MC3 LINE L1 -700 7085 6944 269 277 69 30 chr6 2757785 2757886 -179657356 - L2 LINE L2 -20 3293 3189 6274 123 66 7 chr6 2759088 2760173 -179655069 - L1MC1 LINE L1 -9 6324 5175 599 288 131 13 chr6 2760810 2760967 -179654275 - MIR SINE MIR -5 257 63 1848 153 0 23 chr6 2760967 2761275 -179653967 - AluJo SINE Alu -11 301 1 599 288 131 13 chr6 2761275 2761346 -179653896 - MIR SINE MIR -199 63 2 548 254 65 0 chr6 2761346 2761481 -179653761 + MIR SINE MIR 47 190 -72 380 161 0 62 chr6 2761617 2761698 -179653544 - MLT1D LTR MaLR 0 505 430 618 65 0 0 chr6 2761698 2761775 -179653467 - L1P2 LINE L1 -501 5653 5577 3190 42 8 0 chr6 2761775 2762156 -179653086 + L1PA7 LINE L1 5759 6143 -11 2016 230 11 45 chr6 2762184 2762653 -179652589 - MLT1D LTR MaLR -52 453 1 5089 110 7 1 chr6 2763099 2763829 -179651413 - L1PA14 LINE L1 -65 6096 5363 425 302 34 13 chr6 2764321 2764470 -179650772 - MIR3 SINE MIR -23 185 34 205 286 13 26 chr6 2764972 2765049 -179650193 + L2 LINE L2 3016 3091 -181 2188 107 3 0 chr6 2765061 2765360 -179649882 - AluSx SINE Alu -12 300 1 1971 172 16 44 chr6 2765495 2765879 -179649363 + MSTB LTR MaLR 54 426 0 415 278 190 19 chr6 2766383 2766588 -179648654 + MIR SINE MIR 13 252 -10 2180 180 31 5 chr6 2766855 2767272 -179647970 + L1MC2 LINE L1 5854 6281 -63 325 260 13 0 chr6 2767280 2767357 -179647885 - MLT1H1 LTR MaLR -468 87 10 186 133 0 0 chr6 2768631 2768661 -179646581 + (GGA)n Simple_repeat Simple_repeat 2 31 0 1450 199 93 54 chr6 2769756 2770198 -179645044 + MLT1E3 LTR MaLR 104 562 -62 706 262 11 11 chr6 2770201 2770423 -179644819 + L1PB4 LINE L1 5950 6171 0 383 184 0 71 chr6 2770430 2770528 -179644714 + MLT1E LTR MaLR 503 593 0 708 135 6 140 chr6 2770852 2770941 -179644301 - MER96B DNA MER1_type? -4 413 314 1058 141 11 6 chr6 2770941 2771118 -179644124 - L1MB3 LINE L1 -1 6182 6005 708 135 6 140 chr6 2771118 2771139 -179644103 - MER96B DNA MER1_type? -103 314 292 2209 195 39 9 chr6 2771139 2771600 -179643642 - L1MC1 LINE L1 -8 6325 5851 708 135 6 140 chr6 2771600 2771666 -179643576 - MER96B DNA MER1_type? -125 292 260 183 80 0 0 chr6 2774664 2774689 -179640553 + (T)n Simple_repeat Simple_repeat 1 25 0 592 155 26 0 chr6 2776149 2776265 -179638977 - L1MB3 LINE L1 -1 6182 6064 959 178 53 14 chr6 2777240 2777448 -179637794 + MER20 DNA MER1_type 1 216 -3 2179 108 0 13 chr6 2777977 2778284 -179636958 - AluSx SINE Alu -9 303 1 282 288 14 0 chr6 2778441 2778514 -179636728 + MER112 DNA MER1_type 179 252 -8 1658 196 46 0 chr6 2778565 2778912 -179636330 + MLT2D LTR ERVL 1 363 -51 409 163 150 94 chr6 2779000 2779160 -179636082 + MLT1C LTR MaLR 1 169 -298 350 223 122 21 chr6 2779440 2779609 -179635633 + MLT1I LTR MaLR 266 409 0 435 322 71 43 chr6 2780966 2781177 -179634065 + MIR SINE MIR 20 236 -26 281 262 117 55 chr6 2782662 2782807 -179632435 + MIR SINE MIR 33 186 -76 2029 73 0 18 chr6 2784464 2784736 -179630506 - AluSq SINE Alu -13 300 34 2852 218 64 13 chr6 2785279 2785980 -179629262 - L1MB3 LINE L1 -4 6179 5443 470 314 5 19 chr6 2786279 2786486 -179628756 + SST1 Satellite centromeric 1349 1552 -11 369 75 0 0 chr6 2786512 2786565 -179628677 + (TG)n Simple_repeat Simple_repeat 1 53 0 2176 107 0 0 chr6 2786731 2787022 -179628220 + AluSc SINE Alu 1 291 -18 1064 282 40 26 chr6 2787561 2788015 -179627227 + SST1 Satellite centromeric 1 460 -1103 725 318 51 11 chr6 2788074 2788448 -179626794 + SST1 Satellite centromeric 1161 1549 -14 303 130 0 0 chr6 2788480 2788534 -179626708 + (TG)n Simple_repeat Simple_repeat 1 54 0 317 238 107 89 chr6 2789866 2790034 -179625208 + MER5B DNA MER1_type 1 171 -7 343 266 12 0 chr6 2790459 2790632 -179624610 + (CA)n Simple_repeat Simple_repeat 2 176 0 228 207 175 35 chr6 2791595 2791736 -179623506 + MIR SINE MIR 16 177 -60 1675 172 14 0 chr6 2791757 2792054 -179623188 + AluJo SINE Alu 1 301 -11 2509 222 94 43 chr6 2792092 2792844 -179622398 + L1ME1 LINE L1 5371 6161 -5 608 323 66 10 chr6 2793555 2793843 -179621399 - LTR16C LTR ERVL -8 483 180 644 164 6 18 chr6 2795324 2795495 -179619747 + (TG)n Simple_repeat Simple_repeat 2 170 0 275 237 0 22 chr6 2795510 2795645 -179619597 + (TG)n Simple_repeat Simple_repeat 2 133 0 341 227 0 21 chr6 2795667 2795764 -179619478 + (TG)n Simple_repeat Simple_repeat 2 96 0 271 327 52 47 chr6 2796102 2796313 -179618929 + MIR SINE MIR 50 261 -1 6533 244 60 32 chr6 2796651 2798754 -179616488 + L1ME1 LINE L1 2980 5200 -966 2052 124 0 3 chr6 2798754 2799063 -179616179 + AluSx SINE Alu 1 308 0 6533 244 60 32 chr6 2799063 2800054 -179615188 + L1ME1 LINE L1 5200 6162 -4 2170 110 7 10 chr6 2800195 2800495 -179614747 + AluSg SINE Alu 1 299 -11 479 191 167 12 chr6 2800495 2800663 -179614579 + MER5C DNA MER1_type 131 324 0 5780 228 59 43 chr6 2800784 2801990 -179613252 + L1M4 LINE L1 14 1200 -5444 2294 60 6 73 chr6 2801990 2802304 -179612938 + AluY SINE Alu 1 293 -18 5780 228 59 43 chr6 2802304 2803393 -179611849 + L1M4 LINE L1 1200 2271 -4373 2318 119 0 0 chr6 2803393 2803696 -179611546 + AluSx SINE Alu 1 303 -9 5780 228 59 43 chr6 2803696 2804702 -179610540 + L1M4 LINE L1 2271 3515 -3129 408 366 40 13 chr6 2804714 2805162 -179610080 - MARNA DNA Mariner -75 511 52 26 30 0 0 chr6 2806232 2806265 -179608977 + AT_rich Low_complexity Low_complexity 1 33 0 271 325 25 0 chr6 2807028 2807148 -179608094 + MLT1-int LTR MaLR 21 143 -1228 583 285 27 16 chr6 2807183 2807439 -179607803 + MLT1-int LTR MaLR 292 550 -821 278 338 73 7 chr6 2807667 2807818 -179607424 + MLT1-int LTR MaLR 692 852 -519 1233 214 126 23 chr6 2808056 2808365 -179606877 + MLT1F LTR MaLR 13 353 -189 24 32 0 0 chr6 2809541 2809572 -179605670 + AT_rich Low_complexity Low_complexity 1 31 0 222 118 59 0 chr6 2809644 2809695 -179605547 + (TAA)n Simple_repeat Simple_repeat 2 55 0 344 231 214 0 chr6 2809866 2809983 -179605259 + MER5A DNA MER1_type 41 182 -7 374 312 139 5 chr6 2809996 2810198 -179605044 + MIR SINE MIR 16 244 -18 1922 112 45 159 chr6 2812134 2812617 -179602625 + MSTA LTR MaLR 1 428 0 230 0 33 0 chr6 2814927 2814957 -179600285 + (TG)n Simple_repeat Simple_repeat 2 32 0 1721 81 14 0 chr6 2815340 2815563 -179599679 + AluSc SINE Alu 76 301 -8 21 36 0 0 chr6 2816639 2816667 -179598575 + AT_rich Low_complexity Low_complexity 1 28 0 472 97 14 0 chr6 2817125 2817197 -179598045 - L1PA16 LINE L1 0 6166 6094 183 42 0 0 chr6 2817767 2817791 -179597451 + (TTTA)n Simple_repeat Simple_repeat 1 24 0 1924 151 10 10 chr6 2817803 2818115 -179597127 + AluJo SINE Alu 1 312 0 2309 91 0 0 chr6 2819099 2819410 -179595832 + AluSx SINE Alu 1 311 0 184 313 23 70 chr6 2819828 2819956 -179595286 + MIR SINE MIR 65 186 -76 253 279 96 0 chr6 2821854 2821958 -179593284 + MIR SINE MIR 111 224 -38 22 56 0 0 chr6 2821993 2822029 -179593213 + AT_rich Low_complexity Low_complexity 1 36 0 261 353 116 27 chr6 2822758 2823197 -179592045 - L2 LINE L2 -649 2665 2188 2032 135 3 3 chr6 2823607 2823895 -179591347 + AluSg SINE Alu 1 288 -22 24 0 0 0 chr6 2824464 2824488 -179590754 + AT_rich Low_complexity Low_complexity 1 24 0 2259 119 0 3 chr6 2824826 2825136 -179590106 + AluSg SINE Alu 1 309 -1 197 236 100 70 chr6 2825715 2825889 -179589353 + MIR SINE MIR 29 210 -52 280 325 145 0 chr6 2826190 2826307 -179588935 + L2 LINE L2 3134 3267 -5 195 339 167 11 chr6 2826698 2826884 -179588358 + MIR SINE MIR 43 257 -5 240 211 42 28 chr6 2826919 2826990 -179588252 - MIR3 SINE MIR -23 185 114 2358 69 24 0 chr6 2827727 2828017 -179587225 - AluSc SINE Alu -12 297 1 271 218 56 42 chr6 2830575 2830717 -179584525 - L1ME4a LINE L1 -3 6118 5975 387 0 0 0 chr6 2832407 2832450 -179582792 + (TG)n Simple_repeat Simple_repeat 2 44 0 2144 108 7 0 chr6 2832450 2832733 -179582509 - AluSx SINE Alu -27 285 1 3011 159 42 2 chr6 2832935 2833462 -179581780 - MER44D DNA MER2_type 0 605 3 1256 218 73 30 chr6 2833545 2833875 -179581367 - MER2 DNA MER2_type 0 344 1 539 219 19 129 chr6 2834730 2834804 -179580438 + MER5A DNA MER1_type 1 82 -107 2183 97 26 23 chr6 2834804 2835113 -179580129 + AluSg SINE Alu 1 310 0 539 219 19 129 chr6 2835113 2835248 -179579994 + MER5A DNA MER1_type 82 187 -2 385 282 33 6 chr6 2835735 2835901 -179579341 + ERVL LTR ERVL 2379 2553 -2934 682 304 53 30 chr6 2836114 2836417 -179578825 + ERVL LTR ERVL 2805 3114 -2540 2468 87 3 0 chr6 2837063 2837374 -179577868 - AluSx SINE Alu 0 312 1 221 300 0 0 chr6 2838822 2838882 -179576360 - L2 LINE L2 -3 3310 3251 2581 42 3 7 chr6 2839839 2840145 -179575097 - AluY SINE Alu -6 305 1 896 182 67 34 chr6 2841918 2842127 -179573115 - MER20 DNA MER1_type -2 217 2 2271 109 0 3 chr6 2842772 2843074 -179572168 - AluSq SINE Alu -12 301 1 192 246 35 0 chr6 2843149 2843206 -179572036 + L3 LINE CR1 667 725 -852 180 0 0 0 chr6 2843477 2843497 -179571745 + (ATG)n Simple_repeat Simple_repeat 1 20 0 1275 93 0 0 chr6 2843507 2843713 -179571529 + (TGG)n Simple_repeat Simple_repeat 1 206 0 223 121 35 35 chr6 2843816 2843874 -179571368 + (GTGTG)n Simple_repeat Simple_repeat 2 59 0 681 177 0 0 chr6 2843875 2844022 -179571220 + (TGG)n Simple_repeat Simple_repeat 1 147 0 541 253 164 9 chr6 2844022 2844247 -179570995 - MIR SINE MIR -2 260 1 244 323 31 0 chr6 2845568 2845664 -179569578 + Charlie7 DNA MER1_type 5 103 -2509 1355 201 118 54 chr6 2845668 2846017 -179569225 + MLT1A1 LTR MaLR 4 365 0 21 36 0 0 chr6 2846098 2846126 -179569116 + AT_rich Low_complexity Low_complexity 1 28 0 2120 114 4 0 chr6 2846130 2846445 -179568797 + AluSg SINE Alu 1 316 0 290 200 111 11 chr6 2846462 2846552 -179568690 + Charlie7 DNA MER1_type 2514 2612 0 22 35 0 0 chr6 2848558 2848587 -179566655 + AT_rich Low_complexity Low_complexity 1 29 0 2256 101 0 25 chr6 2848630 2848947 -179566295 - AluSg1 SINE Alu 0 309 1 346 261 23 46 chr6 2849617 2849747 -179565495 - MER5B DNA MER1_type -30 148 22 295 272 154 49 chr6 2851053 2851215 -179564027 + MER5A DNA MER1_type 11 189 0 1491 177 12 50 chr6 2851825 2852147 -179563095 + L1MA7 LINE L1 5981 6290 -1 27 49 0 0 chr6 2852641 2852682 -179562560 + AT_rich Low_complexity Low_complexity 1 41 0 366 298 32 16 chr6 2852829 2852953 -179562289 - MER5A DNA MER1_type -57 132 7 2367 70 0 0 chr6 2853013 2853300 -179561942 - AluSc SINE Alu -3 306 20 201 256 0 0 chr6 2855004 2855047 -179560195 + L3b LINE CR1 1289 1331 -252 906 150 0 6 chr6 2855730 2855890 -179559352 + L1MA10 LINE L1 6169 6327 -7 22 0 0 0 chr6 2857460 2857482 -179557760 + AT_rich Low_complexity Low_complexity 1 22 0 27 73 0 0 chr6 2859299 2859354 -179555888 + AT_rich Low_complexity Low_complexity 1 55 0 2822 145 43 27 chr6 2859637 2860126 -179555116 + LOR1a LTR ERV1 1 497 0 383 296 173 14 chr6 2860502 2860722 -179554520 - L3 LINE CR1 -991 586 332 348 287 75 37 chr6 2862229 2862417 -179552825 + MIR SINE MIR 18 212 -50 2217 108 3 13 chr6 2862441 2862755 -179552487 + AluSp SINE Alu 3 313 0 1024 191 32 0 chr6 2863278 2863467 -179551775 + L1MB3 LINE L1 5418 5612 -559 354 169 56 134 chr6 2863513 2863655 -179551587 + MER41A LTR ERV1 174 304 -250 * 948 158 161 110 chr6 2863631 2863923 -179551319 + MER66A LTR ERV1 171 477 -1 3265 124 41 30 chr6 2863923 2864333 -179550909 + L1MB3 LINE L1 5607 6026 -157 2171 110 17 0 chr6 2864333 2864625 -179550617 + AluSp SINE Alu 1 297 -16 3265 124 41 30 chr6 2864625 2864778 -179550464 + L1MB3 LINE L1 6026 6176 -7 849 224 47 0 chr6 2866047 2866239 -179549003 + MIR SINE MIR 47 247 -15 256 276 90 35 chr6 2866312 2866457 -179548785 - L2 LINE L2 -210 3062 2910 353 293 102 0 chr6 2866986 2867143 -179548099 - MIR SINE MIR -70 192 20 2429 91 7 0 chr6 2867249 2867558 -179547684 + AluSp SINE Alu 1 311 -2 234 203 17 17 chr6 2867681 2867740 -179547502 + MLT1L LTR MaLR 11 69 -546 310 274 85 9 chr6 2867844 2867950 -179547292 + MLT1J LTR MaLR 224 337 -174 1123 101 0 0 chr6 2869206 2869345 -179545897 + AluSq/x SINE Alu 1 139 -174 380 250 125 0 chr6 2869345 2869441 -179545801 - MER5B DNA MER1_type -70 108 1 2432 71 0 3 chr6 2869473 2869770 -179545472 + AluSc SINE Alu 1 296 -13 1396 225 84 28 chr6 2869772 2869858 -179545384 + HAL1 LINE L1 887 967 -1540 533 114 13 0 chr6 2869858 2869937 -179545305 - MADE1 DNA Mariner 0 80 1 1396 225 84 28 chr6 2869937 2870231 -179545011 + HAL1 LINE L1 967 1305 -1202 2250 103 0 0 chr6 2870231 2870543 -179544699 + AluSg SINE Alu 1 312 0 1396 225 84 28 chr6 2870543 2870662 -179544580 + HAL1 LINE L1 1305 1416 -1091 481 216 22 36 chr6 2871090 2871229 -179544013 + HAL1 LINE L1 1405 1541 -966 2067 253 50 43 chr6 2871235 2871863 -179543379 + HAL1 LINE L1 1597 2234 -273 396 0 0 0 chr6 2871863 2871907 -179543335 + (TG)n Simple_repeat Simple_repeat 2 45 0 2067 253 50 43 chr6 2871907 2872183 -179543059 + HAL1 LINE L1 2234 2507 0 1872 159 3 7 chr6 2872362 2872663 -179542579 + AluJb SINE Alu 3 302 -10 243 0 0 0 chr6 2873210 2873237 -179542005 + (TTTTA)n Simple_repeat Simple_repeat 2 28 0 2193 111 0 3 chr6 2873240 2873528 -179541714 - AluSx SINE Alu -25 287 1 2018 110 0 0 chr6 2874252 2874516 -179540726 + AluSx SINE Alu 34 297 -15 1635 186 0 54 chr6 2874526 2874843 -179540399 + AluJo SINE Alu 1 300 -12 905 134 12 0 chr6 2874852 2875023 -179540219 + GA-rich Low_complexity Low_complexity 4 176 0 2564 59 3 0 chr6 2875956 2876260 -179538982 - AluSq SINE Alu -6 307 3 2354 70 0 3 chr6 2877033 2877318 -179537924 + AluSc SINE Alu 17 300 -9 422 269 39 0 chr6 2877360 2877490 -179537752 - MIR SINE MIR -70 192 58 240 338 84 38 chr6 2880841 2881054 -179534188 + L2 LINE L2 2985 3207 -65 181 303 66 25 chr6 2881567 2881689 -179533553 - MIR SINE MIR -5 257 131 229 297 43 29 chr6 2883140 2883278 -179531964 - MER5A DNA MER1_type -24 165 26 240 240 30 0 chr6 2883950 2884050 -179531192 + (TA)n Simple_repeat Simple_repeat 2 104 0 287 218 69 20 chr6 2884228 2884329 -179530913 - MER5A DNA MER1_type -80 109 4 429 294 69 25 chr6 2885241 2885401 -179529841 - MIR SINE MIR -70 192 26 1194 107 0 0 chr6 2885618 2885777 -179529465 - AluSg/x SINE Alu -25 285 127 2278 76 0 0 chr6 2886401 2886689 -179528553 + AluSc SINE Alu 19 306 -3 226 283 133 26 chr6 2887338 2887451 -179527791 - MIR SINE MIR -97 165 41 1037 157 6 0 chr6 2888170 2888336 -179526906 + L1MC1 LINE L1 6055 6221 -112 276 299 11 0 chr6 2888435 2888522 -179526720 + MIR SINE MIR 78 165 -97 424 143 0 0 chr6 2888523 2888586 -179526656 + AluS SINE Alu 2 64 -248 256 200 210 10 chr6 2889449 2889549 -179525693 + MIR SINE MIR 50 169 -93 266 265 61 41 chr6 2889894 2890041 -179525201 + LTR16C LTR ERVL 332 481 -10 226 229 96 12 chr6 2890457 2890540 -179524702 - MER113 DNA MER1_type? -427 94 5 4738 28 0 0 chr6 2891691 2892231 -179523011 + L1PA3 LINE L1 5615 6154 -1 626 176 71 80 chr6 2892300 2892538 -179522704 + MER106A DNA MER1_type 1 236 0 1869 153 7 7 chr6 2894993 2895300 -179519942 + AluJb SINE Alu 1 307 -5 2340 92 0 49 chr6 2895321 2895647 -179519595 + AluSg SINE Alu 1 310 0 1761 149 3 34 chr6 2896698 2896993 -179518249 - AluJo SINE Alu -14 298 13 211 333 0 12 chr6 2897832 2897913 -179517329 - MIR SINE MIR -8 254 175 1238 174 26 15 chr6 2901546 2901810 -179513432 - L1MC3 LINE L1 0 7785 7519 777 259 117 0 chr6 2901810 2902084 -179513158 - L2 LINE L2 -793 2521 2216 3408 192 57 56 chr6 2902834 2903229 -179512013 + L1MB8 LINE L1 5109 5502 -676 976 111 0 15 chr6 2903229 2903364 -179511878 + FLAM_C SINE Alu 1 133 0 3408 192 57 56 chr6 2903364 2904034 -179511208 + L1MB8 LINE L1 5502 6178 0 550 243 186 0 chr6 2904624 2904801 -179510441 - L1MC4 LINE L1 -36 8006 7797 1163 157 17 0 chr6 2904885 2905086 -179510156 - AluJb SINE Alu 0 307 104 2682 240 101 13 chr6 2905088 2906023 -179509219 - L1MC4 LINE L1 -287 7602 6509 390 289 146 50 chr6 2906693 2906932 -179508310 + L1ME LINE L1 5491 5752 -369 417 264 96 34 chr6 2907233 2907411 -179507831 + MIR SINE MIR 8 196 -66 256 208 58 19 chr6 2907684 2907838 -179507404 + (TA)n Simple_repeat Simple_repeat 2 161 0 22 0 0 0 chr6 2907861 2907883 -179507359 + AT_rich Low_complexity Low_complexity 1 22 0 387 270 57 28 chr6 2908027 2908275 -179506967 - L1ME3A LINE L1 -205 5965 5711 388 258 110 53 chr6 2908315 2908462 -179506780 - L1ME3A LINE L1 -604 5558 5421 1532 183 48 14 chr6 2908462 2908757 -179506485 - AluJo SINE Alu -7 305 1 388 258 110 53 chr6 2908757 2908873 -179506369 - L1ME3A LINE L1 -741 5421 5280 304 289 21 14 chr6 2908900 2909042 -179506200 - L1ME3A LINE L1 -897 5249 5107 678 145 8 0 chr6 2909389 2909506 -179505736 - MER2 DNA MER2_type -135 210 93 710 107 0 0 chr6 2909514 2909617 -179505625 - MER2 DNA MER2_type -135 210 108 670 238 219 66 chr6 2909630 2909995 -179505247 - MER21B LTR ERV1 -425 438 18 318 322 35 17 chr6 2910015 2910189 -179505053 + L1M4 LINE L1 4248 4424 -1722 531 188 147 12 chr6 2910890 2911071 -179504171 - MIR SINE MIR -21 241 40 1844 129 7 7 chr6 2911264 2911542 -179503700 - AluSc SINE Alu -13 296 19 2855 203 130 32 chr6 2911993 2913182 -179502060 - pTR5 LTR ERV1 -22 1523 6 1924 92 73 7 chr6 2913215 2913487 -179501755 + AluSp SINE Alu 1 290 -23 599 170 30 15 chr6 2913621 2913756 -179501486 + FRAM SINE Alu 1 136 -40 23 33 0 0 chr6 2914533 2914563 -179500679 + GC_rich Low_complexity Low_complexity 1 30 0 30 27 0 0 chr6 2914936 2914973 -179500269 + GC_rich Low_complexity Low_complexity 1 37 0 23 101 0 0 chr6 2915101 2915180 -179500062 + GC_rich Low_complexity Low_complexity 1 79 0 26 0 0 0 chr6 2915397 2915423 -179499819 + GC_rich Low_complexity Low_complexity 1 26 0 206 263 0 0 chr6 2915447 2915523 -179499719 + G-rich Low_complexity Low_complexity 30 105 0 21 36 0 0 chr6 2915582 2915610 -179499632 + GC_rich Low_complexity Low_complexity 1 28 0 186 319 18 26 chr6 2916509 2916622 -179498620 + L3 LINE CR1 1123 1234 -343 25 31 0 0 chr6 2918756 2918788 -179496454 + AT_rich Low_complexity Low_complexity 1 32 0 25 0 0 0 chr6 2918813 2918838 -179496404 + AT_rich Low_complexity Low_complexity 1 25 0 1192 142 78 23 chr6 2920896 2921115 -179494127 + MER46A DNA MER2_type 1 231 -5 181 207 17 86 chr6 2921498 2921556 -179493686 + MER5A DNA MER1_type 130 183 -6 333 222 154 8 chr6 2921724 2921841 -179493401 + L2 LINE L2 3139 3272 0 22 0 0 0 chr6 2923492 2923514 -179491728 + AT_rich Low_complexity Low_complexity 1 22 0 1004 211 40 103 chr6 2923632 2924031 -179491211 - MLT1B LTR MaLR -16 374 1 713 269 20 10 chr6 2924273 2924474 -179490768 - MIR SINE MIR -6 256 54 22 80 0 0 chr6 2925343 2925393 -179489849 + AT_rich Low_complexity Low_complexity 1 50 0 25 31 0 0 chr6 2926251 2926283 -179488959 + AT_rich Low_complexity Low_complexity 1 32 0 187 225 0 0 chr6 2927868 2927908 -179487334 - MIR SINE MIR -145 117 78 198 274 60 36 chr6 2928080 2928164 -179487078 + MIR3 SINE MIR 116 201 -7 213 280 11 32 chr6 2930261 2930354 -179484888 - MIR SINE MIR -49 213 123 577 198 142 6 chr6 2931170 2931332 -179483910 - MIR SINE MIR -71 191 8 258 315 36 0 chr6 2935602 2935713 -179479529 - HAL1 LINE L1 -702 1805 1691 644 293 168 19 chr6 2935755 2936172 -179479070 - HAL1 LINE L1 -620 1887 1409 320 143 89 0 chr6 2936175 2936231 -179479011 - HAL1 LINE L1 -1144 1363 1303 2266 98 0 25 chr6 2936232 2936549 -179478693 - AluSx SINE Alu -3 309 1 834 277 126 16 chr6 2936549 2937131 -179478111 - L2 LINE L2 -10 3303 2651 251 356 40 0 chr6 2937156 2937305 -179477937 - HAL1 LINE L1 -1879 628 474 529 287 62 14 chr6 2937391 2937600 -179477642 - HAL1 LINE L1 -2278 229 11 2159 123 0 16 chr6 2937631 2937947 -179477295 - AluSx SINE Alu -1 311 1 2829 29 0 0 chr6 2937979 2938289 -179476953 + AluYb8 SINE Alu 1 310 -8 2180 118 0 0 chr6 2938956 2939244 -179475998 + AluSx SINE Alu 1 288 -24 195 42 0 0 chr6 2939248 2939272 -179475970 + (TAAA)n Simple_repeat Simple_repeat 3 26 0 375 226 96 78 chr6 2939932 2940162 -179475080 - LTR33 LTR ERVL -169 352 119 200 209 0 0 chr6 2940587 2940630 -179474612 + L2 LINE L2 3224 3266 -6 393 215 0 93 chr6 2940877 2941049 -179474193 - L1ME4a LINE L1 -3 6118 5963 309 51 0 0 chr6 2941053 2941092 -179474150 + (TG)n Simple_repeat Simple_repeat 1 39 0 2421 91 0 0 chr6 2941300 2941597 -179473645 - AluSx SINE Alu -15 297 1 372 294 166 5 chr6 2941698 2941909 -179473333 + MIR SINE MIR 15 259 -3 280 347 67 0 chr6 2942222 2942372 -179472870 - MIR SINE MIR 0 262 103 688 208 116 29 chr6 2942442 2942615 -179472627 - MER5A DNA MER1_type 0 189 2 225 219 74 12 chr6 2942959 2943041 -179472201 + MER91 DNA MER1_type 105 196 0 258 187 37 44 chr6 2944153 2944234 -179471008 + MIR3 SINE MIR 101 168 -40 1865 106 0 0 chr6 2944252 2944526 -179470716 + AluSg SINE Alu 46 319 0 207 348 65 0 chr6 2944674 2944766 -179470476 + MIR3 SINE MIR 83 180 -28 257 253 145 24 chr6 2945565 2945731 -179469511 + MER5A DNA MER1_type 1 186 -3 2545 54 0 3 chr6 2945736 2946034 -179469208 + AluY SINE Alu 1 297 -14 761 65 9 0 chr6 2947198 2947306 -179467936 + (TCC)n Simple_repeat Simple_repeat 1 109 0 309 266 73 64 chr6 2948024 2948257 -179466985 + MLT1K LTR MaLR 351 585 -3 2365 107 0 0 chr6 2948422 2948732 -179466510 - AluSx SINE Alu -2 310 1 186 188 21 21 chr6 2949443 2949491 -179465751 - L3b LINE CR1 -8 1575 1528 2596 185 8 4 chr6 2949882 2950352 -179464890 - MER70A LTR ERVL 0 472 1 1776 185 49 3 chr6 2950358 2950854 -179464388 - MER70A-int LTR ERVL 0 5023 4469 28 0 0 0 chr6 2950854 2950882 -179464360 + AT_rich Low_complexity Low_complexity 1 28 0 3498 5 0 0 chr6 2950882 2951265 -179463977 - L1HS LINE L1 -3 6152 5770 14040 176 54 28 chr6 2951268 2952629 -179462613 - MER70A-int LTR ERVL -549 4474 3150 249 216 0 0 chr6 2952629 2952680 -179462562 + MER9 LTR ERVK 461 511 0 14040 176 54 28 chr6 2952680 2954049 -179461193 - MER70A-int LTR ERVL -1873 3150 1621 2245 160 76 10 chr6 2954049 2954343 -179460899 - MER70A-int LTR ERVL -3832 1191 918 1748 192 27 0 chr6 2954343 2954671 -179460571 - MER1B DNA MER1_type 0 337 1 2245 160 76 10 chr6 2954671 2955156 -179460086 - MER70A-int LTR ERVL -4105 918 467 372 22 0 0 chr6 2955156 2955201 -179460041 + (TG)n Simple_repeat Simple_repeat 2 46 0 2245 160 76 10 chr6 2955201 2955386 -179459856 - MER70A-int LTR ERVL -4556 467 1 954 144 19 91 chr6 2955386 2955554 -179459688 - MER70A LTR ERVL 0 472 320 4171 142 23 34 chr6 2955554 2956287 -179458955 + LTR8A LTR ERV1 1 725 -2 954 144 19 91 chr6 2956287 2956326 -179458916 - MER70A LTR ERVL -152 320 280 603 256 30 24 chr6 2956360 2956528 -179458714 + HAL1 LINE L1 539 707 -1800 272 272 25 12 chr6 2956536 2956617 -179458625 + HAL1 LINE L1 745 826 -1681 1096 253 80 26 chr6 2956654 2957041 -179458201 + HAL1 LINE L1 1404 1811 -696 461 189 27 18 chr6 2957198 2957309 -179457933 + HAL1 LINE L1 1690 1801 -706 3265 153 131 37 chr6 2957364 2957503 -179457739 + L1MA9 LINE L1 5483 5608 -704 1908 163 20 3 chr6 2957503 2957809 -179457433 + AluJo SINE Alu 1 311 -1 3265 153 131 37 chr6 2957809 2958423 -179456819 + L1MA9 LINE L1 5608 6307 -5 629 257 151 29 chr6 2958434 2958851 -179456391 + HAL1 LINE L1 1812 2279 -228 917 192 33 23 chr6 2960654 2960868 -179454374 - MER20 DNA MER1_type -3 216 1 234 295 0 0 chr6 2960875 2960936 -179454306 + (TA)n Simple_repeat Simple_repeat 2 62 0 780 208 36 24 chr6 2960951 2961119 -179454123 + MER6B DNA MER2_type 41 210 0 283 279 12 0 chr6 2961120 2961206 -179454036 + (TA)n Simple_repeat Simple_repeat 1 87 0 407 181 0 0 chr6 2961206 2961278 -179453964 + MER116 DNA Mariner 5 76 -4 218 250 136 34 chr6 2961466 2961554 -179453688 + MIR SINE MIR 137 233 -29 2444 103 0 0 chr6 2961796 2962107 -179453135 + AluSx SINE Alu 1 311 -1 749 221 12 0 chr6 2962131 2962144 -179453098 - L1MA10 LINE L1 -1 6333 6321 748 234 95 20 chr6 2962144 2962396 -179452846 - L1ME1 LINE L1 -5 6161 5891 2330 55 4 0 chr6 2962402 2962675 -179452567 - AluY SINE Alu -10 301 28 270 275 0 0 chr6 2962779 2962848 -179452394 - AluS SINE Alu -230 69 1 2183 176 72 133 chr6 2962851 2963167 -179452075 - L1ME2 LINE L1 -267 5897 5564 849 159 0 0 chr6 2963167 2963299 -179451943 + FLAM_C SINE Alu 2 133 0 2183 176 72 133 chr6 2963299 2963611 -179451631 - L1ME2 LINE L1 -600 5564 5235 1229 183 5 0 chr6 2963611 2963825 -179451417 + L1PB4 LINE L1 5935 6154 -2 2183 176 72 133 chr6 2963825 2964449 -179450793 - L1ME2 LINE L1 -929 5235 4724 751 200 0 0 chr6 2964456 2964581 -179450661 + FLAM_C SINE Alu 3 127 -16 7431 213 46 48 chr6 2964586 2965326 -179449916 - L1ME2 LINE L1 -1414 4732 3993 189 0 0 0 chr6 2965326 2965347 -179449895 + (TTTC)n Simple_repeat Simple_repeat 2 22 0 1654 183 4 0 chr6 2965349 2965623 -179449619 - AluJo SINE Alu -26 286 12 7431 213 46 48 chr6 2965623 2967162 -179448080 - L1ME2 LINE L1 -2154 3992 2453 2076 135 0 0 chr6 2969072 2969383 -179445859 + L1PA16 LINE L1 5483 5793 -373 415 137 14 0 chr6 2969383 2969453 -179445789 + L1PA16 LINE L1 6077 6150 -16 477 285 129 0 chr6 2969504 2969690 -179445552 + MIR SINE MIR 20 229 -33 294 206 11 0 chr6 2970409 2970489 -179444753 + L1ME3A LINE L1 6007 6091 -79 2203 119 0 0 chr6 2970611 2970913 -179444329 + AluY SINE Alu 1 302 -9 639 311 175 10 chr6 2971741 2972352 -179442890 - L1M4 LINE L1 -1448 4698 3987 697 258 36 22 chr6 2972471 2972535 -179442707 + L1ME2 LINE L1 5728 5790 -376 2052 214 0 0 chr6 2972535 2972900 -179442342 + MLT1A1 LTR MaLR 1 365 0 697 258 36 22 chr6 2972900 2973060 -179442182 + L1ME2 LINE L1 5790 5955 -211 383 288 61 0 chr6 2973067 2973199 -179442043 + L1ME2 LINE L1 6015 6154 -10 401 306 206 29 chr6 2973265 2973561 -179441681 + L2 LINE L2 1830 2072 -1242 2490 63 0 13 chr6 2973561 2973862 -179441380 - AluY SINE Alu -14 297 1 401 306 206 29 chr6 2973862 2974326 -179440916 + L2 LINE L2 2072 2725 -589 35 24 0 0 chr6 2974368 2974410 -179440832 + AT_rich Low_complexity Low_complexity 1 42 0 1833 94 0 84 chr6 2974410 2974490 -179440752 + AluSx SINE Alu 50 135 -177 2297 94 0 0 chr6 2974490 2974776 -179440466 + AluY SINE Alu 1 286 -25 1833 94 0 84 chr6 2974776 2974982 -179440260 + AluSx SINE Alu 135 312 0 1245 101 0 0 chr6 2974982 2975141 -179440101 + AluSg/x SINE Alu 132 290 -20 705 122 0 0 chr6 2976141 2976239 -179439003 + AluJ/FLAM SINE Alu 2 99 -213 2089 122 0 0 chr6 2976258 2976545 -179438697 + AluSx SINE Alu 21 307 -5 24 32 0 0 chr6 2976550 2976581 -179438661 + AT_rich Low_complexity Low_complexity 1 31 0 424 262 59 73 chr6 2976898 2977238 -179438004 - L1M4 LINE L1 -934 5212 4878 243 261 34 67 chr6 2977274 2977393 -179437849 + MER94 DNA DNA 6 120 -14 924 260 124 57 chr6 2977426 2977619 -179437623 - L1M4 LINE L1 -1307 4839 4660 2532 81 0 0 chr6 2977619 2977927 -179437315 + AluSg SINE Alu 1 308 -2 924 260 124 57 chr6 2977927 2978026 -179437216 - L1M4 LINE L1 -1486 4660 4569 1811 130 36 30 chr6 2978026 2978327 -179436915 - AluJo SINE Alu -9 303 1 924 260 124 57 chr6 2978327 2978753 -179436489 - L1M4 LINE L1 -1577 4569 4072 289 294 14 27 chr6 2978764 2978910 -179436332 - L1MDa LINE L1 -3630 2499 2356 360 229 144 65 chr6 2979070 2979376 -179435866 - L1MDa LINE L1 -3809 2320 2031 567 279 124 42 chr6 2979540 2980022 -179435220 - L1MDa LINE L1 -4433 1696 1233 1753 173 3 10 chr6 2980063 2980352 -179434890 + AluJo SINE Alu 2 288 -24 22 35 0 0 chr6 2980352 2980381 -179434861 + AT_rich Low_complexity Low_complexity 1 29 0 437 279 96 100 chr6 2980381 2980983 -179434259 - L1MDa LINE L1 -4949 1170 571 257 297 20 10 chr6 2981410 2981511 -179433731 + MIR SINE MIR 50 151 -57 2379 115 0 0 chr6 2982020 2982332 -179432910 + AluSx SINE Alu 1 312 0 230 136 23 0 chr6 2983738 2983782 -179431460 + (TCCA)n Simple_repeat Simple_repeat 4 48 0 869 170 7 0 chr6 2983793 2984083 -179431159 + (TCCA)n Simple_repeat Simple_repeat 1 292 0 362 211 138 24 chr6 2984279 2984402 -179430840 + MIR SINE MIR 125 261 -1 740 184 0 22 chr6 2985051 2985187 -179430055 + FLAM_A SINE Alu 1 133 0 882 193 0 0 chr6 2986205 2986350 -179428892 + AluJb SINE Alu 138 282 -30 206 32 32 0 chr6 2986354 2986385 -179428857 + (CAAA)n Simple_repeat Simple_repeat 2 33 0 2250 111 0 19 chr6 2986758 2987073 -179428169 - AluSx SINE Alu 0 312 4 374 226 0 29 chr6 2987633 2987735 -179427507 - L1MB2 LINE L1 0 6171 6073 364 244 38 53 chr6 2989625 2989756 -179425486 + L2 LINE L2 3184 3312 -1 22 0 0 0 chr6 2990602 2990624 -179424618 + AT_rich Low_complexity Low_complexity 1 22 0 180 0 0 0 chr6 2991051 2991071 -179424171 + (TCCC)n Simple_repeat Simple_repeat 3 22 0 21 0 0 0 chr6 2991263 2991284 -179423958 + GC_rich Low_complexity Low_complexity 1 21 0 22 0 0 0 chr6 2991417 2991439 -179423803 + GC_rich Low_complexity Low_complexity 1 22 0 816 196 40 67 chr6 2991783 2992008 -179423234 - MLT1A1 LTR MaLR -146 219 1 7727 203 45 40 chr6 2992008 2993736 -179421506 - MLT1A1-int LTR MaLR 0 1735 1 1362 179 56 88 chr6 2993736 2994110 -179421132 - MLT1A1 LTR MaLR 0 365 4 564 232 149 28 chr6 2994146 2994327 -179420915 + MLT1A1 LTR MaLR 163 365 0 202 80 40 40 chr6 2994809 2994859 -179420383 + T-rich Low_complexity Low_complexity 3 52 0 21 0 0 0 chr6 2994862 2994883 -179420359 + AT_rich Low_complexity Low_complexity 1 21 0 25 51 0 0 chr6 2995058 2995097 -179420145 + AT_rich Low_complexity Low_complexity 1 39 0 1462 141 4 13 chr6 2995098 2995325 -179419917 + AluJo SINE Alu 87 311 -1 2261 111 6 19 chr6 2995581 2995897 -179419345 - AluSx SINE Alu 0 312 1 556 279 298 11 chr6 2996169 2996545 -179418697 + L2 LINE L2 2830 3313 0 1042 323 91 29 chr6 2996817 2996894 -179418348 + L3 LINE CR1 445 516 -1061 2346 70 3 0 chr6 2996894 2997192 -179418050 + AluSp SINE Alu 1 299 -14 1042 323 91 29 chr6 2997192 2997227 -179418015 + L3 LINE CR1 516 547 -1030 2171 109 0 0 chr6 2997227 2997529 -179417713 + AluSx SINE Alu 2 303 -9 1042 323 91 29 chr6 2997529 2998043 -179417199 + L3 LINE CR1 547 1111 -466 393 328 61 15 chr6 2998141 2998339 -179416903 + MIR SINE MIR 1 207 -55 2039 87 23 33 chr6 2999030 2999320 -179415922 + AluSx SINE Alu 1 289 -23 198 0 0 0 chr6 2999320 2999342 -179415900 + (TTAA)n Simple_repeat Simple_repeat 3 24 0 1817 106 92 3 chr6 2999614 2999896 -179415346 - AluSx SINE Alu -5 307 1 1610 154 0 52 chr6 2999973 3000278 -179414964 - AluJo SINE Alu -14 298 10 502 271 40 20 chr6 3000349 3000500 -179414742 - MER21B LTR ERV1 -612 251 98 456 221 0 0 chr6 3000539 3000616 -179414626 - MER21B LTR ERV1 -769 94 18 1946 101 3 39 chr6 3000616 3000814 -179414428 - AluSq SINE Alu 0 313 140 2015 121 0 13 chr6 3000814 3001128 -179414114 - AluSx SINE Alu -2 310 1 1946 101 3 39 chr6 3001128 3001264 -179413978 - AluSq SINE Alu -173 140 1 208 344 52 31 chr6 3001359 3001455 -179413787 - MIR3 SINE MIR -45 163 66 230 207 8 107 chr6 3002801 3002922 -179412320 + C-rich Low_complexity Low_complexity 5 113 0 404 192 22 82 chr6 3002969 3003151 -179412091 + CT-rich Low_complexity Low_complexity 2 172 0 890 194 29 0 chr6 3003230 3003405 -179411837 - L1MC3 LINE L1 -391 7394 7215 334 113 42 28 chr6 3003415 3003486 -179411756 - L1MC3 LINE L1 -1310 6475 6404 2167 108 0 3 chr6 3005920 3006225 -179409017 - AluSx SINE Alu -8 304 1 219 69 0 0 chr6 3007753 3007782 -179407460 + (CCCCCT)n Simple_repeat Simple_repeat 4 32 0 2048 125 0 0 chr6 3007826 3008123 -179407119 - AluSg SINE Alu -13 297 1 256 308 58 58 chr6 3008353 3008457 -179406785 - L2 LINE L2 -11 3261 3158 207 272 53 88 chr6 3008792 3008906 -179406336 + MIR SINE MIR 92 201 -61 2902 161 28 19 chr6 3008914 3009456 -179405786 + L1MA9 LINE L1 5476 6022 -290 7493 140 75 116 chr6 3009456 3011220 -179404022 + pTR5 LTR ERV1 743 2433 -5 550 235 68 8 chr6 3011265 3011397 -179403845 + AluSg/x SINE Alu 146 285 -25 1201 196 44 18 chr6 3011397 3011592 -179403650 + L1MA9 LINE L1 6031 6236 -76 2016 128 87 16 chr6 3011592 3011959 -179403283 + MSTD LTR MaLR 4 396 0 1201 196 44 18 chr6 3011959 3012038 -179403204 + L1MA9 LINE L1 6236 6312 0 1818 159 26 100 chr6 3012740 3013161 -179402081 - MLT1B LTR MaLR 0 390 1 1655 98 0 21 chr6 3013756 3013992 -179401250 + AluSx SINE Alu 1 231 -81 201 74 0 0 chr6 3014003 3014030 -179401212 + (GAAAA)n Simple_repeat Simple_repeat 3 29 0 180 227 15 45 chr6 3014613 3014679 -179400563 + L2 LINE L2 3171 3234 -79 287 181 0 36 chr6 3014764 3014847 -179400395 + C-rich Low_complexity Low_complexity 4 83 0 1709 149 4 4 chr6 3014864 3015140 -179400102 - AluJb SINE Alu -34 278 3 1165 206 124 65 chr6 3015143 3015555 -179399687 + LTR56 LTR ERV1 10 445 0 557 200 30 0 chr6 3015639 3015739 -179399503 + MER21B LTR ERV1 2 104 -759 1850 225 112 34 chr6 3015799 3016327 -179398915 + MER21B LTR ERV1 214 782 -81 645 173 39 0 chr6 3016418 3016522 -179398720 - FLAM_C SINE Alu -34 109 2 430 309 140 40 chr6 3016587 3016959 -179398283 + L1ME4a LINE L1 4981 5389 -757 332 359 38 11 chr6 3016994 3017178 -179398064 + L1ME4a LINE L1 5699 5887 -234 299 268 147 47 chr6 3017312 3017611 -179397631 + L1MC4 LINE L1 7525 7853 -189 878 82 8 0 chr6 3017724 3017846 -179397396 - AluY SINE Alu -19 292 170 296 233 124 32 chr6 3017847 3018068 -179397174 - L1MEc LINE L1 -5226 1721 1356 285 261 11 22 chr6 3018190 3018282 -179396960 - L1MEc LINE L1 -6269 869 779 205 371 114 0 chr6 3018372 3018477 -179396765 - MER5A DNA MER1_type -69 120 4 212 328 33 0 chr6 3018501 3018562 -179396680 + MER5B DNA MER1_type 26 88 -90 5683 188 88 56 chr6 3018591 3020129 -179395113 - pTR5 LTR ERV1 -157 2210 31 243 154 39 58 chr6 3020351 3020403 -179394839 - MER5B DNA MER1_type -127 51 1 234 259 19 0 chr6 3020403 3020455 -179394787 + MIR3 SINE MIR 153 205 -3 30 27 0 0 chr6 3020865 3020902 -179394340 + AT_rich Low_complexity Low_complexity 1 37 0 198 342 0 26 chr6 3020990 3021066 -179394176 - MIR SINE MIR -85 123 50 2071 133 0 0 chr6 3021069 3021378 -179393864 + AluSg SINE Alu 1 309 -1 798 288 125 16 chr6 3021575 3021889 -179393353 - MLT1I LTR MaLR 0 409 61 2220 123 18 47 chr6 3021889 3022270 -179392972 - THE1C LTR MaLR 0 375 6 278 213 16 16 chr6 3022301 3022362 -179392880 - MLT1I LTR MaLR -344 65 5 1773 136 9 28 chr6 3023215 3023532 -179391710 + AluJb SINE Alu 1 311 -1 542 300 106 25 chr6 3023543 3023780 -179391462 - MIR SINE MIR 0 262 7 1764 87 23 4 chr6 3025067 3025332 -179389910 + AluSx SINE Alu 1 270 -42 189 0 0 0 chr6 3025336 3025357 -179389885 + (TAAA)n Simple_repeat Simple_repeat 2 22 0 38 89 0 0 chr6 3025575 3025676 -179389566 + GC_rich Low_complexity Low_complexity 1 101 0 13965 187 35 57 chr6 3026365 3032343 -179382899 + L1P5 LINE L1 6 6067 -800 2272 107 0 0 chr6 3032343 3032653 -179382589 + AluSg SINE Alu 1 310 0 13965 187 35 57 chr6 3032653 3033085 -179382157 + L1P5 LINE L1 6067 6507 -360 313 244 49 0 chr6 3033133 3033215 -179382027 + MLT1J1 LTR MaLR 350 435 -11 525 304 212 23 chr6 3033552 3034023 -179381219 - L2 LINE L2 -930 2384 1825 967 173 37 6 chr6 3034187 3034349 -179380893 - FAM SINE Alu -8 167 1 260 163 38 50 chr6 3034406 3034486 -179380756 + L1M LINE L1 5309 5387 -2421 423 315 76 73 chr6 3034696 3035039 -179380203 - L1ME4a LINE L1 -24 6097 5754 203 170 21 0 chr6 3035090 3035137 -179380105 + CT-rich Low_complexity Low_complexity 3 50 0 323 157 100 0 chr6 3035143 3035213 -179380029 + L1MB2 LINE L1 6088 6164 -7 358 312 109 18 chr6 3035244 3035465 -179379777 - L1ME4a LINE L1 -2099 5709 5469 2441 139 43 26 chr6 3035511 3035934 -179379308 - MSTB1 LTR MaLR 0 432 3 461 332 63 90 chr6 3036071 3036562 -179378680 + L1M4 LINE L1 4207 4684 -1462 1990 141 3 3 chr6 3037052 3037358 -179377884 + AluSx SINE Alu 1 306 -6 552 196 9 9 chr6 3037365 3037477 -179377765 + MER50 LTR ERV1 493 604 -130 4112 144 21 32 chr6 3037567 3038343 -179376899 + L1MB5 LINE L1 5408 6174 0 227 323 0 0 chr6 3038812 3038874 -179376368 + L2 LINE L2 3194 3255 -17 2505 35 0 7 chr6 3038901 3039211 -179376031 + AluY SINE Alu 1 308 -3 391 269 0 10 chr6 3040865 3040969 -179374273 - MIR SINE MIR 0 262 160 212 317 48 28 chr6 3041086 3041231 -179374011 - MIR3 SINE MIR -59 149 2 225 0 0 0 chr6 3041593 3041618 -179373624 + (A)n Simple_repeat Simple_repeat 1 25 0 22 0 0 0 chr6 3042111 3042133 -179373109 + AT_rich Low_complexity Low_complexity 1 22 0 589 67 48 0 chr6 3042665 3042769 -179372473 + (TA)n Simple_repeat Simple_repeat 2 110 0 1722 130 66 36 chr6 3044292 3044593 -179370649 - AluSx SINE Alu -2 310 1 225 209 9 19 chr6 3044784 3044889 -179370353 + GA-rich Low_complexity Low_complexity 2 105 0 709 124 133 0 chr6 3045355 3045468 -179369774 + FLAM_C SINE Alu 1 128 -5 446 294 69 87 chr6 3046156 3046394 -179368848 + L1M4 LINE L1 2696 2937 -3209 1744 155 55 0 chr6 3046394 3046685 -179368557 + AluJo SINE Alu 1 307 -5 446 294 69 87 chr6 3046685 3046720 -179368522 + L1M4 LINE L1 2937 2971 -3175 2305 118 0 0 chr6 3046720 3047024 -179368218 + AluSx SINE Alu 1 304 -8 446 294 69 87 chr6 3047024 3047273 -179367969 + L1M4 LINE L1 2971 3223 -2923 1094 134 0 41 chr6 3047444 3047615 -179367627 + AluSg/x SINE Alu 121 284 -28 209 0 62 0 chr6 3047615 3047647 -179367595 + (CAAAA)n Simple_repeat Simple_repeat 2 180 0 2414 81 10 0 chr6 3048072 3048368 -179366874 + AluY SINE Alu 1 299 -12 243 326 71 0 chr6 3048369 3048510 -179366732 + L1ME4a LINE L1 5970 6120 -1 2292 145 18 43 chr6 3048758 3049200 -179366042 + MER65A LTR ERV1 12 442 -3 396 0 0 0 chr6 3050424 3050468 -179364774 + (CA)n Simple_repeat Simple_repeat 1 44 0 183 80 0 0 chr6 3050899 3050924 -179364318 + (TTTTG)n Simple_repeat Simple_repeat 2 26 0 2100 123 16 10 chr6 3052065 3052374 -179362868 - AluSx SINE Alu -1 311 1 615 228 69 0 chr6 3053796 3053941 -179361301 - MER96 DNA MER1_type? -1 174 20 1638 208 1 61 chr6 3053941 3054367 -179360875 - L1MB7 LINE L1 -2 6182 5776 859 258 10 7 chr6 3054366 3054668 -179360574 + L1M4 LINE L1 2903 3205 -2941 * 2252 115 3 0 chr6 3054682 3054977 -179360265 - AluSx SINE Alu -16 296 1 200 321 79 21 chr6 3055912 3056052 -179359190 - L2 LINE L2 0 3272 3125 1132 168 162 70 chr6 3056208 3056523 -179358719 - MER2 DNA MER2_type 0 344 1 301 186 0 20 chr6 3056707 3056809 -179358433 + (TG)n Simple_repeat Simple_repeat 1 100 0 287 251 16 8 chr6 3056830 3057091 -179358151 + (TG)n Simple_repeat Simple_repeat 1 263 0 420 271 0 25 chr6 3057172 3057502 -179357740 + (TG)n Simple_repeat Simple_repeat 1 321 0 270 239 6 12 chr6 3057521 3057684 -179357558 + (TG)n Simple_repeat Simple_repeat 1 162 0 8253 67 1 0 chr6 3058223 3059191 -179356051 + LTR5 LTR ERVK 1 969 0 2368 112 0 0 chr6 3059704 3060009 -179355233 + AluSx SINE Alu 1 305 -7 993 212 14 18 chr6 3060370 3060587 -179354655 - MER20 DNA MER1_type 0 219 4 2460 84 7 3 chr6 3061677 3061985 -179353257 + AluSx SINE Alu 1 309 -3 579 170 54 48 chr6 3062093 3062240 -179353002 + MLT1D LTR MaLR 1 148 -357 1437 60 27 0 chr6 3062578 3062763 -179352479 - L1PA4 LINE L1 -1 6154 5965 3177 134 112 2 chr6 3063057 3063603 -179351639 - MER4B LTR ERV1 -4 606 1 1127 187 196 6 chr6 3063649 3063965 -179351277 + MLT1D LTR MaLR 130 505 0 231 355 167 21 chr6 3064071 3064257 -179350985 - MIR SINE MIR -37 225 13 2309 98 7 0 chr6 3064367 3064664 -179350578 - AluSx SINE Alu -13 299 1 2125 144 0 0 chr6 3065144 3065442 -179349800 - AluSx SINE Alu -14 298 1 186 103 0 0 chr6 3066798 3066827 -179348415 + (CA)n Simple_repeat Simple_repeat 2 30 0 739 200 0 8 chr6 3067142 3067272 -179347970 + FLAM_A SINE Alu 2 130 -3 3383 147 37 35 chr6 3067993 3068150 -179347092 + MER41B LTR ERV1 1 156 -479 1752 165 7 20 chr6 3068150 3068453 -179346789 + AluJo SINE Alu 1 299 -13 3383 147 37 35 chr6 3068453 3068921 -179346321 + MER41B LTR ERV1 156 627 -8 1498 71 0 5 chr6 3069299 3069495 -179345747 - MER4E LTR ERV1 0 779 585 21 36 0 0 chr6 3069748 3069776 -179345466 + GC_rich Low_complexity Low_complexity 1 28 0 2830 86 30 92 chr6 3069827 3070520 -179344722 + SVA Other Other 393 868 -555 1458 101 6 60 chr6 3070533 3070869 -179344373 + SVA Other Other 549 866 -520 6559 71 3 60 chr6 3070935 3071947 -179343295 + SVA Other Other 433 1386 0 1273 99 117 9 chr6 3071964 3072177 -179343065 - MER4B LTR ERV1 -183 427 192 337 174 14 0 chr6 3072192 3072261 -179342981 - AluSp/q SINE Alu -3 300 231 200 321 79 21 chr6 3072461 3072601 -179342641 - L2 LINE L2 0 3272 3125 1141 175 156 63 chr6 3072757 3073072 -179342170 - MER2 DNA MER2_type 0 344 1 301 186 0 20 chr6 3073256 3073358 -179341884 + (TG)n Simple_repeat Simple_repeat 1 100 0 305 239 12 20 chr6 3073379 3073640 -179341602 + (TG)n Simple_repeat Simple_repeat 1 258 0 420 271 0 25 chr6 3073721 3074051 -179341191 + (TG)n Simple_repeat Simple_repeat 1 321 0 234 245 6 13 chr6 3074070 3074229 -179341013 + (TG)n Simple_repeat Simple_repeat 1 158 0 8253 67 1 0 chr6 3074768 3075736 -179339506 + LTR5 LTR ERVK 1 969 0 2368 112 0 0 chr6 3076249 3076554 -179338688 + AluSx SINE Alu 1 305 -7 993 212 14 18 chr6 3076915 3077132 -179338110 - MER20 DNA MER1_type 0 219 4 2468 84 7 3 chr6 3078222 3078531 -179336711 + AluSx SINE Alu 1 310 -2 579 170 54 48 chr6 3078641 3078788 -179336454 + MLT1D LTR MaLR 1 148 -357 1322 76 32 5 chr6 3079126 3079311 -179335931 - L1PA4 LINE L1 -1 6154 5965 3177 134 112 2 chr6 3079605 3080151 -179335091 - MER4B LTR ERV1 -4 606 1 1127 187 196 6 chr6 3080197 3080513 -179334729 + MLT1D LTR MaLR 130 505 0 236 355 167 21 chr6 3080619 3080805 -179334437 - MIR SINE MIR -37 225 13 2318 97 7 0 chr6 3080915 3081213 -179334029 - AluSx SINE Alu -12 300 1 2138 141 0 0 chr6 3081693 3081991 -179333251 - AluSx SINE Alu -14 298 1 186 103 0 0 chr6 3083346 3083375 -179331867 + (CA)n Simple_repeat Simple_repeat 2 30 0 739 200 0 8 chr6 3083690 3083820 -179331422 + FLAM_A SINE Alu 2 130 -3 3383 147 37 35 chr6 3084541 3084698 -179330544 + MER41B LTR ERV1 1 156 -479 1752 165 7 20 chr6 3084698 3085001 -179330241 + AluJo SINE Alu 1 299 -13 3383 147 37 35 chr6 3085001 3085469 -179329773 + MER41B LTR ERV1 156 627 -8 2940 122 54 40 chr6 3085847 3086255 -179328987 - MER4B LTR ERV1 0 766 197 2093 97 29 42 chr6 3086255 3086564 -179328678 - AluSx SINE Alu -7 305 1 2940 122 54 40 chr6 3086564 3086764 -179328478 - MER4B LTR ERV1 -569 197 1 2211 191 48 0 chr6 3087258 3087698 -179327544 - LOR1b LTR ERV1 0 461 1 497 130 11 22 chr6 3087698 3087790 -179327452 - LOR1b-int LTR ERV1 0 8120 8030 * 1552 141 8 4 chr6 3087789 3088052 -179327190 - MER41D-int LTR ERV1 -2056 6064 5801 * 31474 101 37 24 chr6 3088042 3091976 -179323266 - MER41D-int LTR ERV1 -2596 5524 1640 3220 193 43 55 chr6 3091976 3092810 -179322432 - LTR5 LTR ERVK -145 824 1 31474 101 37 24 chr6 3092810 3093596 -179321646 - MER41D-int LTR ERV1 -6480 1640 730 9210 40 2 3 chr6 3093596 3094666 -179320576 + MER11C LTR ERVK 1 1069 -2 31474 101 37 24 chr6 3094666 3095190 -179320052 - MER41D-int LTR ERV1 -7390 730 214 2092 117 34 0 chr6 3095190 3095488 -179319754 + AluSx SINE Alu 1 308 -4 619 170 0 45 chr6 3095547 3095583 -179319659 - FRAM SINE Alu -183 129 93 2846 170 17 68 chr6 3095583 3095950 -179319292 - MER41D LTR ERV1 0 557 230 2158 107 0 7 chr6 3095950 3096241 -179319001 + AluSg SINE Alu 1 289 -21 2846 170 17 68 chr6 3096241 3096460 -179318782 - MER41D LTR ERV1 -327 230 1 619 170 0 45 chr6 3096460 3096535 -179318707 - FRAM SINE Alu -219 93 23 425 207 224 62 chr6 3096623 3096687 -179318555 - Charlie7 DNA MER1_type -586 2026 1974 2192 120 3 3 chr6 3096687 3096996 -179318246 - AluSx SINE Alu -3 309 1 425 207 224 62 chr6 3096996 3097284 -179317958 - Charlie7 DNA MER1_type -638 1974 1617 323 213 16 0 chr6 3097735 3097796 -179317446 - MER94 DNA DNA -1 133 72 324 118 118 0 chr6 3097919 3097987 -179317255 - LTR50 LTR ERVL -7 788 713 1874 147 3 3 chr6 3099066 3099372 -179315870 - AluSx SINE Alu -6 306 1 2136 107 3 3 chr6 3099612 3099920 -179315322 + AluSg SINE Alu 1 308 -2 311 152 0 0 chr6 3100264 3100310 -179314932 + Alu SINE Alu 252 297 -11 1576 237 57 0 chr6 3100827 3101283 -179313959 - MER114 LTR ERV -121 527 46 742 255 13 0 chr6 3101298 3101455 -179313787 - MER45A DNA AcHobo 0 178 20 605 184 9 9 chr6 3101657 3101771 -179313471 - MLT1A2 LTR MaLR 0 374 261 7713 154 73 68 chr6 3101771 3103449 -179311793 + pTR5 LTR ERV1 743 2429 -9 230 187 67 53 chr6 3103719 3103794 -179311448 - L1MA7 LINE L1 -4 6287 6212 2241 124 29 9 chr6 3103794 3104140 -179311102 - LTR1 LTR ERV1 0 785 433 1378 158 12 116 chr6 3104156 3104491 -179310751 - LTR1 LTR ERV1 -462 323 24 388 123 92 0 chr6 3104526 3104591 -179310651 - L1MA8 LINE L1 -76 6215 6145 291 294 165 0 chr6 3104591 3104700 -179310542 + MER50 LTR ERV1 1 127 -607 820 266 122 42 chr6 3104763 3105109 -179310133 + MER50 LTR ERV1 105 490 -244 2076 115 3 0 chr6 3105109 3105404 -179309838 + AluY SINE Alu 1 296 -15 820 266 122 42 chr6 3105404 3105466 -179309776 + MER50 LTR ERV1 490 546 -188 4299 174 67 59 chr6 3105531 3106911 -179308331 + pTR5 LTR ERV1 724 2436 -2 22 0 0 0 chr6 3107016 3107038 -179308204 + AT_rich Low_complexity Low_complexity 1 22 0 583 226 24 8 chr6 3107093 3107217 -179308025 + FLAM_A SINE Alu 4 129 -4 877 128 101 13 chr6 3107300 3107449 -179307793 - MER44D DNA MER2_type 0 605 444 844 89 0 0 chr6 3107506 3107619 -179307623 - MER4E LTR ERV1 -14 765 485 3101 123 161 21 chr6 3107624 3108202 -179307040 - MER4D LTR ERV1 -237 666 8 2267 87 3 0 chr6 3108202 3108501 -179306741 + AluSp SINE Alu 1 300 -13 421 211 120 49 chr6 3108517 3108555 -179306687 - MER44D DNA MER2_type -2069 422 388 2097 90 10 3 chr6 3108555 3108843 -179306399 + AluSq SINE Alu 1 290 -23 421 211 120 49 chr6 3108843 3108858 -179306384 - MER44D DNA MER2_type -2103 388 375 213 39 0 0 chr6 3108858 3108884 -179306358 + (TC)n Simple_repeat Simple_repeat 1 26 0 421 211 120 49 chr6 3108884 3108971 -179306271 - MER44D DNA MER2_type -2116 375 1 1851 180 50 40 chr6 3108991 3109435 -179305807 + MER83 LTR ERV1 1 448 0 2084 125 0 6 chr6 3109832 3110145 -179305097 + AluSx SINE Alu 1 311 -1 1728 144 3 11 chr6 3111659 3111963 -179303279 + AluSx SINE Alu 1 302 0 2238 87 0 0 chr6 3112557 3112856 -179302386 + AluY SINE Alu 1 299 -12 989 95 15 7 chr6 3112865 3113002 -179302240 + AluSg SINE Alu 1 138 -172 2113 103 0 19 chr6 3113003 3113314 -179301928 + AluSx SINE Alu 1 305 -7 1263 310 170 13 chr6 3115324 3116355 -179298887 + L2 LINE L2 2094 3290 -23 2197 95 0 0 chr6 3116362 3116656 -179298586 + AluSx SINE Alu 6 299 -13 183 194 0 0 chr6 3116656 3116687 -179298555 + L2 LINE L2 3240 3270 -2 588 250 83 46 chr6 3117080 3117210 -179298032 - MER58A DNA MER1_type -2196 224 81 2160 113 0 0 chr6 3117210 3117521 -179297721 + AluSq SINE Alu 1 311 -2 588 250 83 46 chr6 3117521 3117606 -179297636 - MER58A DNA MER1_type -2339 81 1 314 163 101 93 chr6 3117969 3118098 -179297144 + MLT1J LTR MaLR 209 338 -173 201 291 18 0 chr6 3118677 3118732 -179296510 - L2 LINE L2 -2 3270 3215 1740 161 3 35 chr6 3119658 3119880 -179295362 + AluJo SINE Alu 1 212 -100 1908 115 0 11 chr6 3119880 3120158 -179295084 + AluSc SINE Alu 23 297 -12 1740 161 3 35 chr6 3120158 3120246 -179294996 + AluJo SINE Alu 212 301 -11 2209 114 0 0 chr6 3121017 3121325 -179293917 + AluSx SINE Alu 1 308 -4 2160 89 7 0 chr6 3121904 3122197 -179293045 + AluSx SINE Alu 1 295 -17 531 210 185 107 chr6 3122396 3122649 -179292593 + MLT1H1 LTR MaLR 66 298 -257 2295 77 3 0 chr6 3122649 3122946 -179292296 + AluSp SINE Alu 1 298 -15 531 210 185 107 chr6 3122946 3123140 -179292102 + MLT1H1 LTR MaLR 298 548 -7 292 260 0 13 chr6 3123155 3123232 -179292010 + MLT1H1-int LTR MaLR 15 90 -1281 252 224 138 0 chr6 3123383 3123441 -179291801 + MLT1H1-int LTR MaLR 476 541 -830 1737 171 13 0 chr6 3124115 3124413 -179290829 + MLT1B LTR MaLR 1 302 -88 1051 221 71 24 chr6 3126833 3127281 -179287961 + MLT1D LTR MaLR 1 505 0 695 156 25 8 chr6 3128009 3128131 -179287111 - AluJb SINE Alu -187 125 2 448 277 161 0 chr6 3128511 3128666 -179286576 + MIR3 SINE MIR 20 199 -9 343 333 113 33 chr6 3128894 3129359 -179285883 + L1 LINE L1 3930 4429 -1717 233 373 24 24 chr6 3129432 3129601 -179285641 - MIR SINE MIR -90 172 4 516 271 46 13 chr6 3130097 3130248 -179284994 + LTR35 LTR ERV1 463 618 0 578 238 78 24 chr6 3130722 3130928 -179284314 - HAL1 LINE L1 0 2507 2291 787 215 0 6 chr6 3130933 3131096 -179284146 - AluJo SINE Alu 0 312 151 290 236 95 107 chr6 3131163 3131405 -179283837 - HAL1 LINE L1 -358 2149 1911 1860 158 13 16 chr6 3132537 3132840 -179282402 + MER1B DNA MER1_type 38 339 0 872 182 13 0 chr6 3132905 3133064 -179282178 - AluJo SINE Alu -151 161 1 6006 94 14 25 chr6 3133347 3134583 -179280659 + L1PA14 LINE L1 4941 6161 0 356 287 17 98 chr6 3134777 3134951 -179280291 - HAL1 LINE L1 -1606 901 742 222 240 0 0 chr6 3135454 3135504 -179279738 + (TA)n Simple_repeat Simple_repeat 2 51 0 287 49 24 0 chr6 3135871 3135912 -179279330 + (TG)n Simple_repeat Simple_repeat 2 43 0 1100 103 0 0 chr6 3135964 3136109 -179279133 + AluSg SINE Alu 1 145 -165 429 115 179 0 chr6 3136109 3136187 -179279055 + AluSc SINE Alu 201 292 -17 198 103 0 0 chr6 3136834 3136863 -179278379 + (A)n Simple_repeat Simple_repeat 1 29 0 215 222 25 37 chr6 3137493 3137574 -179277668 + C-rich Low_complexity Low_complexity 1 80 0 391 133 0 0 chr6 3137991 3138051 -179277191 + MER41A LTR ERV1 131 190 -364 2021 85 61 0 chr6 3138052 3138346 -179276896 + AluSx SINE Alu 1 312 0 6101 83 25 20 chr6 3138348 3139289 -179275953 + L1PB1 LINE L1 5151 6097 -54 1908 130 7 17 chr6 3139289 3139589 -179275653 + AluSg SINE Alu 1 297 -13 6101 83 25 20 chr6 3139589 3139645 -179275597 + L1PB1 LINE L1 6097 6151 0 32 26 0 0 chr6 3139646 3139685 -179275557 + AT_rich Low_complexity Low_complexity 1 39 0 430 239 19 65 chr6 3139938 3140093 -179275149 - MER20 DNA MER1_type 0 219 72 389 273 66 93 chr6 3140110 3140576 -179274666 - L1M4 LINE L1 -906 5240 4798 2120 112 0 0 chr6 3140698 3140994 -179274248 - AluSg SINE Alu -14 296 1 1913 146 7 0 chr6 3141050 3141337 -179273905 + AluSx SINE Alu 1 289 -23 33 0 0 0 chr6 3141337 3141370 -179273872 + AT_rich Low_complexity Low_complexity 1 33 0 436 162 0 0 chr6 3141384 3141452 -179273790 + AluS SINE Alu 2 69 -243 218 54 0 27 chr6 3141472 3141509 -179273733 + (TAAAA)n Simple_repeat Simple_repeat 5 40 0 485 308 65 16 chr6 3141512 3141987 -179273255 - L1M4 LINE L1 -1530 4616 4122 196 360 11 22 chr6 3142040 3142129 -179273113 + L3 LINE CR1 324 411 -1166 222 239 60 15 chr6 3142407 3142474 -179272768 + L3 LINE CR1 892 961 -616 4868 133 47 21 chr6 3143277 3144147 -179271095 - MER4D LTR ERV1 0 872 1 22 0 0 0 chr6 3144227 3144249 -179270993 + AT_rich Low_complexity Low_complexity 1 22 0 2170 142 39 88 chr6 3145036 3145368 -179269874 + MER4B LTR ERV1 1 348 -431 1778 148 40 0 chr6 3145368 3145665 -179269577 - AluJb SINE Alu -3 309 1 2170 142 39 88 chr6 3145665 3145939 -179269303 + MER4B LTR ERV1 348 779 0 3820 147 3 51 chr6 3146028 3146695 -179268547 + MER41B LTR ERV1 1 635 0 2363 161 60 31 chr6 3148048 3148085 -179267157 + MER31A LTR ERV1 1 35 -450 2029 132 21 0 chr6 3148085 3148520 -179266722 - AluSx SINE Alu 0 441 1 2363 161 60 31 chr6 3148520 3148935 -179266307 + MER31A LTR ERV1 35 467 -18 216 297 16 0 chr6 3149196 3149260 -179265982 + CT-rich Low_complexity Low_complexity 4 68 0 821 160 23 0 chr6 3149277 3149408 -179265834 - FRAM SINE Alu -38 138 5 361 182 0 26 chr6 3150183 3150260 -179264982 + MER39 LTR ERV1 633 707 0 2205 126 0 13 chr6 3150293 3150594 -179264648 + AluSx SINE Alu 1 297 -15 1226 126 0 11 chr6 3150600 3150783 -179264459 + AluSg/x SINE Alu 132 312 0 2373 102 0 10 chr6 3151569 3151882 -179263360 - AluSx SINE Alu -2 310 1 2434 88 0 0 chr6 3152348 3152644 -179262598 - AluSg SINE Alu -14 296 1 352 302 93 79 chr6 3152644 3152922 -179262320 - L2 LINE L2 -6 3266 2985 2151 137 154 7 chr6 3153147 3153602 -179261640 - MER1A DNA MER1_type -8 525 1 237 316 95 50 chr6 3153610 3153708 -179261534 - L2 LINE L2 -685 2629 2537 2288 113 0 0 chr6 3153708 3154008 -179261234 + AluSg SINE Alu 1 300 -10 237 316 95 50 chr6 3154008 3154266 -179260976 - L2 LINE L2 -777 2537 2257 288 321 0 79 chr6 3156821 3156961 -179258281 + L2 LINE L2 3141 3269 -3 3946 105 27 5 chr6 3156998 3157550 -179257692 + LTR6A LTR ERV1 1 564 0 33 43 0 0 chr6 3157810 3157857 -179257385 + AT_rich Low_complexity Low_complexity 1 47 0 2094 122 0 22 chr6 3157910 3158221 -179257021 + AluSx SINE Alu 1 304 -8 496 176 77 6 chr6 3158557 3158683 -179256559 - L1MD3 LINE L1 0 7982 6246 2030 197 35 0 chr6 3158684 3159106 -179256136 - MER54A LTR ERVL 0 901 465 304 223 100 3 chr6 3159213 3159319 -179255923 - L1MD3 LINE L1 -108 7871 7565 2645 56 0 0 chr6 3159479 3159784 -179255458 - AluY SINE Alu -6 305 1 268 146 0 0 chr6 3160200 3160241 -179255001 + MSTB1 LTR MaLR 4 44 -382 895 213 0 6 chr6 3160241 3160415 -179254827 - FRAM SINE Alu -3 173 1 2002 128 80 13 chr6 3160415 3160790 -179254452 + MSTB1 LTR MaLR 33 432 0 1355 215 100 0 chr6 3161229 3161540 -179253702 + MER2 DNA MER2_type 2 343 -1 440 180 9 81 chr6 3161786 3161897 -179253345 - Tigger1 DNA MER2_type -2315 103 1 258 109 254 0 chr6 3161900 3161955 -179253287 + L1M4c LINE L1 1452 1520 -4864 * 4187 175 45 38 chr6 3161950 3162377 -179252865 + L1MB4 LINE L1 4827 5250 -930 2461 74 3 0 chr6 3162377 3162676 -179252566 + AluSp SINE Alu 1 300 -13 4187 175 45 38 chr6 3162676 3163170 -179252072 + L1MB4 LINE L1 5250 5739 -441 591 15 0 0 chr6 3163170 3163238 -179252004 + (TTCC)n Simple_repeat Simple_repeat 3 70 0 1465 147 9 0 chr6 3163239 3163463 -179251779 - AluSp SINE Alu 0 313 88 4187 175 45 38 chr6 3163463 3163710 -179251532 + L1MB4 LINE L1 5739 6029 -151 1940 130 51 0 chr6 3163710 3164002 -179251240 - AluSx SINE Alu -5 307 1 4187 175 45 38 chr6 3164002 3164156 -179251086 + L1MB4 LINE L1 6029 6180 0 282 271 97 7 chr6 3165439 3165583 -179249659 - L1MD1 LINE L1 -87 6155 5999 247 86 0 0 chr6 3165660 3165695 -179249547 - tRNA-Gly-GGG tRNA tRNA -39 35 1 305 237 32 11 chr6 3165704 3165797 -179249445 - L1MD1 LINE L1 -456 5903 5809 258 145 13 64 chr6 3165988 3166152 -179249090 + (CGGGG)n Simple_repeat Simple_repeat 1 155 0 184 286 20 0 chr6 3166646 3166695 -179248547 - MIR SINE MIR -88 174 125 2311 72 14 3 chr6 3166885 3167178 -179248064 - AluSg SINE Alu -14 296 1 1662 113 4 4 chr6 3167181 3167411 -179247831 - AluSg/x SINE Alu -8 302 73 2363 102 16 3 chr6 3167422 3167727 -179247515 - AluSq SINE Alu -4 309 1 2213 130 0 3 chr6 3168651 3168950 -179246292 - AluSx SINE Alu -13 299 2 288 352 56 28 chr6 3168958 3169137 -179246105 + L2 LINE L2 2718 2901 -413 278 214 0 0 chr6 3169138 3169194 -179246048 - AluJo SINE Alu 0 302 247 1116 163 6 12 chr6 3169195 3169367 -179245875 - AluJo SINE Alu -112 200 30 244 283 85 109 chr6 3170275 3170568 -179244674 - MLT1J LTR MaLR -127 384 99 240 228 0 0 chr6 3171148 3171205 -179244037 - L1MB2 LINE L1 0 6171 6115 1589 84 0 0 chr6 3171246 3171436 -179243806 - AluSx SINE Alu -122 190 1 1890 202 45 23 chr6 3171472 3171971 -179243271 - L1M3 LINE L1 -410 5773 5266 311 265 29 20 chr6 3172160 3172262 -179242980 - MIR SINE MIR -66 142 40 554 191 0 0 chr6 3172929 3173018 -179242224 - FLAM SINE Alu -15 128 40 245 321 24 73 chr6 3173091 3173256 -179241986 + L2 LINE L2 3138 3294 -19 1046 200 5 23 chr6 3173446 3173666 -179241576 - MER20 DNA MER1_type -3 216 1 2316 92 23 3 chr6 3174477 3174782 -179240460 + AluSp SINE Alu 1 311 -2 1203 130 0 6 chr6 3174809 3174971 -179240271 + AluSx SINE Alu 1 161 -151 3953 109 11 11 chr6 3175007 3175623 -179239619 - MER11C LTR ERVK -14 1057 442 5348 175 55 15 chr6 3175734 3177433 -179237809 + L1M3f LINE L1 269 2035 -4065 368 288 137 7 chr6 3177445 3177591 -179237651 + MIR SINE MIR 81 245 -17 2832 16 0 0 chr6 3178179 3178487 -179236755 - AluY SINE Alu -3 308 1 543 274 105 11 chr6 3179962 3180152 -179235090 - MIR SINE MIR -8 254 47 302 289 114 0 chr6 3180964 3181078 -179234164 - L2 LINE L2 -1 3312 3186 2388 103 0 0 chr6 3181381 3181683 -179233559 + AluSx SINE Alu 1 302 -10 357 145 0 0 chr6 3182253 3182315 -179232927 + (CA)n Simple_repeat Simple_repeat 1 62 0 308 289 10 39 chr6 3183093 3183197 -179232045 - L1MB2 LINE L1 -2453 5355 5255 401 241 145 48 chr6 3183228 3183456 -179231786 - L1MB2 LINE L1 -1686 4460 4211 2116 113 7 0 chr6 3183457 3183770 -179231472 + AluSx SINE Alu 1 315 0 618 259 86 100 chr6 3184069 3184489 -179230753 - L1ME4a LINE L1 0 6121 5708 3183 169 7 4 chr6 3185012 3185575 -179229667 - L1PA16 LINE L1 -3 6163 5599 880 174 0 7 chr6 3185711 3185855 -179229387 - FLAM_C SINE Alu 0 143 1 338 264 75 69 chr6 3185859 3186018 -179229224 - L1MB2 LINE L1 -3828 2318 2159 1492 135 39 143 chr6 3186105 3186207 -179229035 + MER7A DNA MER2_type 3 114 -2924 1593 173 60 7 chr6 3186207 3186490 -179228752 - AluJo SINE Alu -12 300 3 1492 135 39 143 chr6 3186490 3186771 -179228471 + MER7A DNA MER2_type 114 344 -2 494 70 0 56 chr6 3186786 3186857 -179228385 + Alu SINE Alu 5 71 -239 379 240 142 49 chr6 3186877 3187081 -179228161 - L1 LINE L1 -1713 4433 4211 2088 75 68 4 chr6 3187082 3187363 -179227879 + AluY SINE Alu 1 299 -12 1812 168 7 21 chr6 3187368 3187659 -179227583 + AluJo SINE Alu 1 287 -25 1688 190 7 7 chr6 3187660 3187965 -179227277 + AluJb SINE Alu 1 305 -7 2376 66 17 0 chr6 3189638 3189925 -179225317 - AluSp SINE Alu -21 292 1 2206 81 3 14 chr6 3190467 3190750 -179224492 + AluSx SINE Alu 22 301 -11 226 206 63 16 chr6 3190753 3190816 -179224426 - MIR SINE MIR -162 100 35 752 310 114 34 chr6 3190896 3191429 -179223813 + MLT1K LTR MaLR 12 587 -1 349 267 44 0 chr6 3191684 3191774 -179223468 + MIR SINE MIR 55 148 -60 376 305 58 0 chr6 3192138 3192292 -179222950 - MIR SINE MIR -87 175 13 311 329 29 7 chr6 3192456 3192596 -179222646 + L1MEd LINE L1 300 442 -5974 4415 165 31 43 chr6 3192750 3193951 -179221291 + pTR5 LTR ERV1 6 2438 0 437 320 59 15 chr6 3194145 3194417 -179220825 + L1MEd LINE L1 854 1137 -5279 1833 171 10 3 chr6 3194513 3194812 -179220430 + AluJo SINE Alu 1 301 -11 333 250 167 36 chr6 3194932 3195100 -179220142 + L1MEd LINE L1 2178 2367 -4059 697 317 59 15 chr6 3195130 3195595 -179219647 + L1MEd LINE L1 2401 2889 -3537 2330 80 7 0 chr6 3195595 3195882 -179219360 + AluSp SINE Alu 1 289 -24 697 317 59 15 chr6 3195882 3195893 -179219349 + L1MEd LINE L1 2889 2898 -3528 248 231 26 39 chr6 3195938 3196016 -179219226 + L1ME3A LINE L1 5482 5558 -608 329 321 120 55 chr6 3196061 3196335 -179218907 + L1ME3A LINE L1 5799 6090 -80 1829 183 0 14 chr6 3196452 3196747 -179218495 + AluJo SINE Alu 1 291 -21 670 88 22 0 chr6 3197117 3197208 -179218034 - AluJb SINE Alu -15 297 205 812 161 0 29 chr6 3198811 3198948 -179216294 + FLAM_C SINE Alu 1 133 0 963 198 19 14 chr6 3199037 3199244 -179215998 - MLT1A1 LTR MaLR 0 365 158 1072 150 0 53 chr6 3199244 3199431 -179215811 - AluJo SINE Alu -135 177 1 1485 239 23 47 chr6 3199471 3199898 -179215344 + MLT1C LTR MaLR 1 417 -50 472 106 9 50 chr6 3199931 3200025 -179215217 + L1MDa LINE L1 1217 1304 -5236 1686 171 7 10 chr6 3200025 3200330 -179214912 + AluJo SINE Alu 1 304 -8 472 106 9 50 chr6 3200330 3200382 -179214860 + L1MDa LINE L1 1304 1357 -5183 * 624 207 41 12 chr6 3200381 3200550 -179214692 + L1MDa LINE L1 1644 1817 -4723 2341 242 57 7 chr6 3200553 3200611 -179214631 + L1MDa LINE L1 2952 3006 -3534 2387 149 16 71 chr6 3200611 3201062 -179214180 + MSTB LTR MaLR 1 426 0 2341 242 57 7 chr6 3201062 3201752 -179213490 + L1MDa LINE L1 3006 3738 -2802 2442 122 100 5 chr6 3201767 3202176 -179213066 + MER83 LTR ERV1 1 448 0 9622 179 22 42 chr6 3202200 3204030 -179211212 + MER83-int LTR ERV1 22 1815 -2470 2109 174 14 68 chr6 3203999 3204082 -179211160 + MER83-int LTR ERV1 4373 4459 -1487 * 1853 36 5 0 chr6 3204082 3204304 -179210938 - L1PA4 LINE L1 -8 6147 5925 2109 174 14 68 chr6 3204304 3204708 -179210534 + MER83-int LTR ERV1 4459 4834 -1112 1646 176 37 3 chr6 3204861 3205157 -179210085 + AluJb SINE Alu 1 306 -6 3315 145 59 66 chr6 3205157 3205848 -179209394 + MER83-int LTR ERV1 5365 6204 -394 2329 44 40 7 chr6 3205848 3206145 -179209097 + AluY SINE Alu 3 309 -2 3315 145 59 66 chr6 3206145 3206197 -179209045 + MER83-int LTR ERV1 6204 6255 -343 445 151 118 132 chr6 3206232 3206384 -179208858 + MER83-int LTR ERV1 5924 6073 -258 * 2109 141 62 25 chr6 3206379 3206733 -179208509 + MER83-int LTR ERV1 2663 3029 -1256 * 2138 175 17 62 chr6 3206726 3207144 -179208098 + MER83-int LTR ERV1 3876 4274 -11 2390 130 78 53 chr6 3207145 3207518 -179207724 + MER83 LTR ERV1 1 388 -60 2210 86 3 0 chr6 3207518 3207809 -179207433 - AluSp SINE Alu -21 292 1 2390 130 78 53 chr6 3207809 3207872 -179207370 + MER83 LTR ERV1 388 448 0 1196 232 58 35 chr6 3207903 3208334 -179206908 + L1MDa LINE L1 3779 4219 -2321 1893 130 7 33 chr6 3208351 3208652 -179206590 + AluSx SINE Alu 1 293 -19 652 235 36 41 chr6 3208686 3208907 -179206335 + L1MDa LINE L1 4158 4377 -2163 226 53 0 0 chr6 3208912 3208950 -179206292 - AluJo SINE Alu 0 302 265 800 119 8 0 chr6 3208950 3209068 -179206174 - AluSq/x SINE Alu -193 119 1 1956 219 96 57 chr6 3209129 3209310 -179205932 + L1MDa LINE L1 4455 4627 -1913 2309 90 0 0 chr6 3209310 3209622 -179205620 + AluSq SINE Alu 1 312 -1 1956 219 96 57 chr6 3209622 3210212 -179205030 + L1MDa LINE L1 4627 5256 -1284 231 36 0 0 chr6 3210233 3210261 -179204981 + (TTA)n Simple_repeat Simple_repeat 2 29 0 1538 169 22 0 chr6 3210264 3210531 -179204711 - AluJo SINE Alu -32 280 8 2317 235 17 26 chr6 3212046 3212697 -179202545 - L1M4 LINE L1 -1748 4398 3754 2203 93 23 0 chr6 3212747 3213049 -179202193 + AluSc SINE Alu 1 309 0 1739 157 14 3 chr6 3213221 3213514 -179201728 - AluJo SINE Alu -16 296 1 1717 216 176 7 chr6 3215066 3215640 -179199602 - L1M4 LINE L1 -1612 4534 3864 886 174 0 0 chr6 3215644 3215788 -179199454 + FAM SINE Alu 5 148 -37 1998 117 0 0 chr6 3215820 3216127 -179199115 - AluSx SINE Alu 0 307 1 298 270 92 116 chr6 3216750 3217043 -179198199 + MLT1J LTR MaLR 99 384 -127 214 211 28 37 chr6 3219009 3219118 -179196124 + (CACGC)n Simple_repeat Simple_repeat 1 108 0 2072 88 37 3 chr6 3219217 3219511 -179195731 + AluSx SINE Alu 1 304 -8 298 264 94 26 chr6 3219619 3219921 -179195321 + L1MD1 LINE L1 5815 6156 -86 2888 48 3 0 chr6 3220032 3220384 -179194858 + LTR5 LTR ERVK 1 353 -616 3139 31 0 0 chr6 3220384 3220741 -179194501 + HERVK LTR ERVK 4787 5143 -2100 2225 35 6 99 chr6 3221533 3221876 -179193366 - AluY SINE Alu 0 311 1 1384 231 24 11 chr6 3222419 3222594 -179192648 - L1MB4 LINE L1 -1 6179 6005 2276 205 53 37 chr6 3222594 3223676 -179191566 - L1MC4 LINE L1 -461 5719 4863 274 131 229 0 chr6 3223687 3223748 -179191494 - L1M4c LINE L1 -4858 1526 1452 14424 126 40 18 chr6 3223751 3225199 -179190043 + Tigger1 DNA MER2_type 1 1416 -1002 2023 102 0 0 chr6 3225199 3225543 -179189699 + AluSq SINE Alu 1 344 0 14424 126 40 18 chr6 3225543 3225956 -179189286 + Tigger1 DNA MER2_type 1416 1818 -600 2250 105 0 0 chr6 3225956 3226262 -179188980 + AluSx SINE Alu 1 306 -6 14424 126 40 18 chr6 3226262 3226441 -179188801 + Tigger1 DNA MER2_type 1818 1992 -426 2433 57 0 0 chr6 3226441 3226740 -179188502 + AluY SINE Alu 1 299 -12 14424 126 40 18 chr6 3226740 3227062 -179188180 + Tigger1 DNA MER2_type 1992 2418 0 2715 168 14 89 chr6 3227062 3227757 -179187485 + L1MB8 LINE L1 5531 6173 -5 28 0 0 0 chr6 3227757 3227785 -179187457 + AT_rich Low_complexity Low_complexity 1 28 0 2165 101 7 0 chr6 3227785 3228091 -179187151 - AluSg SINE Alu -2 308 1 662 218 70 0 chr6 3228101 3228243 -179186999 + MER96 DNA MER1_type? 23 174 -1 2439 24 0 70 chr6 3230193 3230524 -179184718 + AluY SINE Alu 1 308 -3 408 203 123 123 chr6 3231213 3231261 -179183981 + L2 LINE L2 3176 3223 -90 1981 119 34 0 chr6 3231261 3231556 -179183686 - AluSx SINE Alu -7 305 1 408 203 123 123 chr6 3231556 3231645 -179183597 + L2 LINE L2 3222 3313 0 183 357 71 12 chr6 3231652 3231736 -179183506 + L2 LINE L2 3180 3268 -4 4489 165 70 64 chr6 3231772 3232913 -179182329 - L1MC2 LINE L1 -1 6343 5199 2292 82 0 3 chr6 3232973 3233276 -179181966 - AluSq SINE Alu -11 302 1 23 33 0 0 chr6 3233284 3233314 -179181928 + AT_rich Low_complexity Low_complexity 1 30 0 27 29 0 0 chr6 3234154 3234188 -179181054 + GC_rich Low_complexity Low_complexity 1 34 0 2044 99 10 3 chr6 3234963 3235265 -179179977 + AluSx SINE Alu 2 305 -7 1883 132 18 0 chr6 3235677 3235958 -179179284 - AluSg SINE Alu -19 291 6 216 368 58 0 chr6 3236176 3236263 -179178979 + MIR SINE MIR 88 179 -83 348 179 64 26 chr6 3236397 3236475 -179178767 - MLT1L LTR MaLR -532 83 3 402 233 89 33 chr6 3237459 3237639 -179177603 - L1ME4a LINE L1 -6 6115 5926 251 226 52 70 chr6 3237674 3237789 -179177453 - L1ME4a LINE L1 -284 5837 5725 199 218 164 18 chr6 3237833 3237888 -179177354 - L2 LINE L2 -52 3220 3158 310 263 11 63 chr6 3238330 3238425 -179176817 - L1MC4 LINE L1 -1339 6703 6614 * 335 243 0 107 chr6 3238368 3238471 -179176771 + L1MC4 LINE L1 6614 6705 -1337 249 147 29 15 chr6 3238472 3238540 -179176702 + (TA)n Simple_repeat Simple_repeat 2 70 0 512 226 178 0 chr6 3238559 3238705 -179176537 - MIR SINE MIR -70 192 21 1788 206 90 25 chr6 3239323 3239812 -179175430 - L1ME2 LINE L1 -53 6111 5591 2281 82 0 19 chr6 3239896 3240212 -179175030 - AluSg SINE Alu 0 310 1 734 232 12 4 chr6 3240319 3240517 -179174725 - L1ME4a LINE L1 -541 5625 5425 543 265 151 62 chr6 3240698 3241169 -179174073 - L1MEd LINE L1 -5250 869 357 373 309 20 7 chr6 3241317 3241469 -179173773 - L1MEd LINE L1 -5960 159 6 1794 144 0 39 chr6 3241619 3241931 -179173311 + AluJo SINE Alu 2 301 -11 243 0 0 0 chr6 3241932 3241959 -179173283 + (TA)n Simple_repeat Simple_repeat 1 27 0 207 88 0 0 chr6 3242760 3242794 -179172448 + (TTCA)n Simple_repeat Simple_repeat 3 36 0 774 145 0 0 chr6 3243293 3243410 -179171832 - FLAM_A SINE Alu -6 136 20 641 171 77 0 chr6 3243457 3243574 -179171668 + AluJb SINE Alu 5 130 -182 23 33 0 0 chr6 3243915 3243945 -179171297 + AT_rich Low_complexity Low_complexity 1 30 0 1022 173 0 18 chr6 3244141 3244309 -179170933 - FRAM SINE Alu -1 165 1 2028 107 3 0 chr6 3244321 3244610 -179170632 - AluSg SINE Alu -20 290 1 271 231 249 72 chr6 3244638 3244859 -179170383 - L2 LINE L2 -177 3095 2836 470 51 17 0 chr6 3245071 3245130 -179170112 - 5S rRNA rRNA -29 92 33 225 281 271 0 chr6 3245860 3245956 -179169286 - L2 LINE L2 0 3313 3192 2401 80 3 0 chr6 3246811 3247123 -179168119 + AluSp SINE Alu 1 313 0 430 259 36 27 chr6 3248534 3248646 -179166596 + L2 LINE L2 3201 3313 0 209 295 64 26 chr6 3248829 3248907 -179166335 - L2 LINE L2 -2 3311 3231 553 325 135 43 chr6 3248973 3249824 -179165418 + L2 LINE L2 2165 3113 -159 2201 113 0 0 chr6 3249824 3250124 -179165118 - AluSc SINE Alu -9 300 1 553 325 135 43 chr6 3250124 3250211 -179165031 + L2 LINE L2 3113 3191 -81 1729 149 17 13 chr6 3250856 3250868 -179164374 - L1MB3 LINE L1 -153 6030 6020 435 179 0 11 chr6 3250868 3250963 -179164279 - L1MB3 LINE L1 -2 6181 6088 1729 149 17 13 chr6 3250963 3251251 -179163991 - L1MB3 LINE L1 -163 6020 5729 1475 193 56 3 chr6 3251375 3251681 -179163561 - L1MB3 LINE L1 -430 5812 5491 1953 241 82 29 chr6 3251697 3252223 -179163019 - MER21B LTR ERV1 -270 593 40 503 151 0 0 chr6 3252233 3252319 -179162923 - L1MDa LINE L1 -4482 2058 1973 4403 206 109 113 chr6 3252323 3252792 -179162450 - L1MDa LINE L1 -4745 1795 1326 2090 65 61 0 chr6 3252792 3253070 -179162172 - AluY SINE Alu -16 295 1 4403 206 109 113 chr6 3253070 3253952 -179161290 - L1MDa LINE L1 -5214 1326 361 629 167 0 0 chr6 3253952 3254042 -179161200 - 5S rRNA rRNA -31 90 1 4403 206 109 113 chr6 3254042 3254402 -179160840 - L1MDa LINE L1 -6179 361 1 22 70 0 0 chr6 3254751 3254794 -179160448 + AT_rich Low_complexity Low_complexity 1 43 0 21 0 0 0 chr6 3255628 3255649 -179159593 + AT_rich Low_complexity Low_complexity 1 21 0 850 276 15 15 chr6 3255652 3255993 -179159249 + L1MC/D LINE L1 2337 2677 -3469 763 264 113 27 chr6 3258888 3259218 -179156024 + L1MC/D LINE L1 2688 3081 -3065 180 0 0 0 chr6 3259218 3259238 -179156004 + (TA)n Simple_repeat Simple_repeat 2 21 0 763 264 113 27 chr6 3259238 3259430 -179155812 + L1MC/D LINE L1 3081 3255 -2891 1381 186 29 14 chr6 3259441 3259716 -179155526 + AluJo SINE Alu 25 303 -9 1740 287 80 27 chr6 3259716 3260484 -179154758 + L1MC/D LINE L1 3245 4074 -2072 1732 161 28 3 chr6 3260484 3260775 -179154467 - AluJb SINE Alu -14 298 1 1740 287 80 27 chr6 3260775 3260962 -179154280 + L1MC/D LINE L1 4074 4250 -1896 459 244 65 30 chr6 3260986 3261187 -179154055 + L1MC/D LINE L1 4402 4609 -1537 2256 101 0 0 chr6 3261188 3261496 -179153746 - AluY SINE Alu -3 308 1 2083 102 0 0 chr6 3261501 3261808 -179153434 - AluSx SINE Alu 0 307 1 1242 270 49 36 chr6 3261858 3262388 -179152854 + L1MC/D LINE L1 4621 5157 -989 35 41 0 0 chr6 3262429 3262478 -179152764 + AT_rich Low_complexity Low_complexity 1 49 0 501 267 53 25 chr6 3262508 3262551 -179152691 + L1MC/D LINE L1 5156 5196 -1001 1395 156 84 11 chr6 3262551 3262837 -179152405 + AluJo SINE Alu 1 305 0 501 267 53 25 chr6 3262837 3263088 -179152154 + L1MC/D LINE L1 5196 5471 -726 417 314 69 5 chr6 3263116 3263320 -179151922 + L1MC4a LINE L1 4491 4707 -1439 358 251 81 8 chr6 3263374 3263716 -179151526 - LTR16A LTR ERVL -2 448 1 615 298 133 29 chr6 3263854 3263900 -179151342 + L1MC4a LINE L1 5258 5298 -823 2381 77 0 0 chr6 3263900 3264211 -179151031 + AluY SINE Alu 1 311 0 615 298 133 29 chr6 3264211 3264765 -179150477 + L1MC4a LINE L1 5298 5545 -576 1775 146 3 11 chr6 3264777 3265064 -179150178 + AluSx SINE Alu 1 285 -27 2134 106 7 7 chr6 3265229 3265530 -179149712 - AluSx SINE Alu -11 301 1 22 88 0 0 chr6 3265573 3265630 -179149612 + AT_rich Low_complexity Low_complexity 1 57 0 1297 164 126 0 chr6 3265642 3265911 -179149331 + AluJb SINE Alu 1 303 -9 867 209 0 17 chr6 3265946 3266123 -179149119 + FRAM SINE Alu 1 174 -2 267 225 152 29 chr6 3266268 3266406 -179148836 + L1ME4a LINE L1 5964 6118 -3 2727 175 50 27 chr6 3266407 3266796 -179148446 - L1MB4 LINE L1 0 6180 5802 2019 129 31 20 chr6 3266796 3267153 -179148089 + MER46B DNA MER2_type 1 236 0 2727 175 50 27 chr6 3267153 3267243 -179147999 - L1MB4 LINE L1 -378 5802 5716 1990 86 31 14 chr6 3267243 3267533 -179147709 - AluSx SINE Alu -17 295 1 2727 175 50 27 chr6 3267533 3267924 -179147318 - L1MB4 LINE L1 -464 5716 5336 1727 136 0 14 chr6 3267924 3268204 -179147038 - AluSx SINE Alu -1 311 36 2727 175 50 27 chr6 3268204 3268718 -179146524 - L1MB4 LINE L1 -844 5336 4669 369 368 12 6 chr6 3269190 3269361 -179145881 - L2 LINE L2 -1673 1641 1470 293 242 182 15 chr6 3269359 3269491 -179145751 + MIR SINE MIR 69 222 -40 * 2096 101 21 0 chr6 3269502 3269789 -179145453 - AluSx SINE Alu -19 293 1 2109 120 0 3 chr6 3271606 3271905 -179143337 + AluSx SINE Alu 1 298 -14 2142 86 6 32 chr6 3271912 3272225 -179143017 + AluSg SINE Alu 1 305 -5 351 256 26 51 chr6 3272238 3272355 -179142887 - L2 LINE L2 -31 3282 3169 451 305 73 11 chr6 3272836 3273013 -179142229 + MIR3 SINE MIR 20 207 -1 223 222 111 74 chr6 3273204 3273285 -179141957 + MIR SINE MIR 179 262 0 250 304 82 44 chr6 3273698 3273833 -179141409 - L2 LINE L2 -4 3309 3170 3677 164 37 17 chr6 3274263 3274842 -179140400 - L1MB3 LINE L1 0 6183 5585 2258 79 7 7 chr6 3274842 3275145 -179140097 - AluSx SINE Alu -9 303 1 3677 164 37 17 chr6 3275145 3275290 -179139952 - L1MB3 LINE L1 -598 5585 5444 554 243 35 7 chr6 3275741 3275885 -179139357 + MIR SINE MIR 105 252 -10 1046 216 25 0 chr6 3276159 3276363 -179138879 - MER58A DNA MER1_type -15 209 1 353 263 0 114 chr6 3277101 3277166 -179138076 + MER91A DNA MER1_type 88 136 -60 1784 148 3 29 chr6 3277166 3277476 -179137766 - AluJo SINE Alu -10 302 1 353 263 0 114 chr6 3277476 3277524 -179137718 + MER91A DNA MER1_type 136 188 -8 746 141 8 8 chr6 3278140 3278261 -179136981 - FLAM_C SINE Alu -21 122 2 905 167 51 65 chr6 3279327 3279543 -179135699 - MER20 DNA MER1_type 0 219 7 21 0 0 0 chr6 3279798 3279819 -179135423 + AT_rich Low_complexity Low_complexity 1 21 0 1380 176 0 12 chr6 3280566 3280811 -179134431 + AluJo SINE Alu 1 242 -70 470 269 57 14 chr6 3280983 3281124 -179134118 + MIR SINE MIR 72 218 -44 2251 95 0 0 chr6 3281210 3281504 -179133738 + AluSq SINE Alu 2 295 -18 3771 173 30 12 chr6 3282131 3282855 -179132387 - L1MB3 LINE L1 -5 6178 5442 246 186 29 88 chr6 3283221 3283323 -179131919 + (CGGGG)n Simple_repeat Simple_repeat 2 97 0 198 339 121 16 chr6 3283744 3283868 -179131374 - MIR3 SINE MIR -52 156 20 362 292 53 0 chr6 3284000 3284113 -179131129 - MER5A DNA MER1_type -7 182 64 2104 95 7 3 chr6 3284676 3284972 -179130270 - AluSq SINE Alu -16 297 1 263 208 47 36 chr6 3285583 3285716 -179129526 + MIR SINE MIR 36 206 -56 1960 116 0 58 chr6 3285926 3286254 -179128988 - AluSc SINE Alu 0 309 1 2235 68 0 3 chr6 3286655 3286947 -179128295 + AluY SINE Alu 21 311 0 1717 118 45 0 chr6 3287981 3288268 -179126974 - L1MA5A LINE L1 0 6297 5998 417 243 0 0 chr6 3288715 3288789 -179126453 + MER81 DNA DNA 3 76 -38 2075 156 9 0 chr6 3289089 3289422 -179125820 + MER2 DNA MER2_type 10 345 0 2027 115 14 0 chr6 3289687 3289982 -179125260 - AluSx SINE Alu -13 299 1 23 0 0 0 chr6 3290882 3290905 -179124337 + AT_rich Low_complexity Low_complexity 1 23 0 869 175 0 12 chr6 3291224 3291390 -179123852 - AluSc SINE Alu -11 298 135 1878 81 7 61 chr6 3291393 3291689 -179123553 - AluSx SINE Alu -13 299 20 399 263 101 86 chr6 3292127 3292458 -179122784 - L1ME4a LINE L1 -3 6118 5778 2158 117 0 0 chr6 3292458 3292756 -179122486 - AluSg SINE Alu -12 298 1 399 263 101 86 chr6 3292756 3292842 -179122400 - L1ME4a LINE L1 -343 5778 5695 243 322 166 5 chr6 3292839 3293038 -179122204 - L1ME LINE L1 -405 5765 5535 * 809 188 0 7 chr6 3294165 3294303 -179120939 + AluJb SINE Alu 137 273 -39 2080 110 3 3 chr6 3294443 3294744 -179120498 - AluSp SINE Alu -12 301 1 624 168 0 34 chr6 3295241 3295360 -179119882 + MER58 DNA MER1_type 2305 2419 -1 242 303 122 45 chr6 3295590 3295966 -179119276 + L2 LINE L2 1537 1941 -1373 1798 149 3 19 chr6 3297188 3297503 -179117739 + AluJb SINE Alu 3 312 0 664 281 86 34 chr6 3298426 3298750 -179116492 - L1ME4a LINE L1 -467 5695 5355 1827 143 6 19 chr6 3299066 3299241 -179116001 - AluJb SINE Alu -2 310 139 2404 50 10 0 chr6 3299241 3299539 -179115703 - AluY SINE Alu -10 301 1 1827 143 6 19 chr6 3299539 3299677 -179115565 - AluJb SINE Alu -173 139 1 309 277 53 34 chr6 3299968 3300256 -179114986 - L1MEc LINE L1 -4819 1651 1268 369 345 0 9 chr6 3300277 3300387 -179114855 - L1MEc LINE L1 -5030 1342 1234 339 327 19 31 chr6 3300392 3300554 -179114688 - L1MEc LINE L1 -5398 974 815 268 213 110 39 chr6 3301680 3301807 -179113435 - L2 LINE L2 -1 3271 3136 1971 137 7 10 chr6 3302663 3302955 -179112287 - AluSc SINE Alu -18 291 1 377 301 98 45 chr6 3303640 3303886 -179111356 + MIR SINE MIR 4 262 0 186 265 29 15 chr6 3303957 3304025 -179111217 + MIR SINE MIR 193 261 -1 211 319 118 0 chr6 3304320 3304455 -179110787 - MIR SINE MIR -70 192 42 320 287 10 0 chr6 3304852 3304953 -179110289 - MIR3 SINE MIR -12 196 95 2195 103 0 10 chr6 3306013 3306305 -179108937 - AluSc SINE Alu -20 289 1 199 316 92 26 chr6 3306394 3306546 -179108696 - MIR SINE MIR -44 218 57 2054 107 4 4 chr6 3306838 3307135 -179108107 + AluSq SINE Alu 14 310 0 747 235 39 0 chr6 3307518 3307697 -179107545 - MLT1B LTR MaLR -204 186 1 2437 85 7 0 chr6 3307950 3308255 -179106987 - AluY SINE Alu -4 307 1 2102 132 6 28 chr6 3308261 3308580 -179106662 - AluJo SINE Alu 0 312 1 200 263 7 0 chr6 3308976 3309128 -179106114 + (TTCGGG)n Simple_repeat Simple_repeat 6 158 0 213 252 0 0 chr6 3309172 3309307 -179105935 + (TTCGGG)n Simple_repeat Simple_repeat 6 140 0 496 278 10 0 chr6 3309333 3310070 -179105172 + (TTCGGG)n Simple_repeat Simple_repeat 1 744 0 371 277 9 0 chr6 3310116 3310594 -179104648 + (TTCGGG)n Simple_repeat Simple_repeat 1 482 0 471 284 18 0 chr6 3310674 3310843 -179104399 + (TTCGGG)n Simple_repeat Simple_repeat 5 176 0 214 303 30 20 chr6 3310875 3310974 -179104268 + MIR SINE MIR 105 204 -58 1289 186 5 0 chr6 3311005 3311226 -179104016 + AluJb SINE Alu 85 306 -6 814 183 0 20 chr6 3311364 3311517 -179103725 - FRAM SINE Alu -4 172 23 1926 196 21 75 chr6 3311548 3312068 -179103174 - MLT2B1 LTR ERVL -11 509 18 551 278 24 24 chr6 3312941 3313110 -179102132 - MIR SINE MIR 0 262 94 2181 100 14 0 chr6 3313568 3313870 -179101372 - AluSx SINE Alu 0 306 1 186 227 0 0 chr6 3314807 3314851 -179100391 + (TCCA)n Simple_repeat Simple_repeat 1 44 0 1915 164 9 25 chr6 3316686 3317003 -179098239 + AluJo SINE Alu 1 312 0 538 274 0 0 chr6 3320995 3321119 -179094123 + FLAM_A SINE Alu 1 124 -9 553 307 64 86 chr6 3321122 3321154 -179094088 - MER92A LTR ERV1 -14 398 367 2478 79 7 0 chr6 3321154 3321459 -179093783 + AluSp SINE Alu 5 311 -2 553 307 64 86 chr6 3321459 3321833 -179093409 - MER92A LTR ERV1 -45 367 1 3210 137 6 4 chr6 3322980 3323493 -179091749 - MER75 DNA T2_type 0 514 1 707 360 45 11 chr6 3324263 3324549 -179090693 + MER115 DNA AcHobo 89 384 -309 812 263 105 25 chr6 3324549 3324834 -179090408 + MER77 LTR ERV1 290 597 -8 1369 267 68 32 chr6 3324918 3325390 -179089852 + MER77-int LTR ERV1 2 490 -3701 * 1520 241 23 66 chr6 3325380 3325554 -179089688 + MER77-int LTR ERV1 1218 1398 -2793 2395 116 0 0 chr6 3325554 3325864 -179089378 - AluSx SINE Alu -2 310 1 1520 241 23 66 chr6 3325864 3326128 -179089114 + MER77-int LTR ERV1 1398 1637 -2554 5282 231 50 28 chr6 3326207 3327540 -179087702 + MER77-int LTR ERV1 1631 2993 -1198 641 96 0 0 chr6 3327857 3327951 -179087291 - AluSx SINE Alu -10 302 209 2222 95 7 0 chr6 3328559 3328843 -179086399 - AluSx SINE Alu -22 290 5 4375 170 49 14 chr6 3329310 3330144 -179085098 - MER21B LTR ERV1 0 863 1 1716 129 16 150 chr6 3330575 3331063 -179084179 + MER4A LTR ERV1 1 423 -241 549 255 13 20 chr6 3331075 3331224 -179084018 + MER4C LTR ERV1 276 423 -42 296 250 13 26 chr6 3331221 3331297 -179083945 + MER4C LTR ERV1 389 463 -2 * 726 103 0 8 chr6 3331381 3331498 -179083744 - AluSp/q SINE Alu 0 313 198 1578 97 141 7 chr6 3331498 3331767 -179083475 + LTR7 LTR ERV1 9 313 -137 15701 160 16 32 chr6 3331767 3335036 -179080206 + HERVH LTR ERV1 982 4232 -2297 4661 132 173 23 chr6 3335044 3336409 -179078833 + pTR5 LTR ERV1 740 2438 0 6295 106 9 2 chr6 3336413 3337322 -179077920 + HERVH LTR ERV1 4235 5149 -2564 1352 146 0 0 chr6 3337323 3337543 -179077699 + HERVH LTR ERV1 5600 5819 -1894 * 2146 87 82 14 chr6 3337541 3337908 -179077334 + HERVH LTR ERV1 7322 7713 0 2621 83 95 5 chr6 3337908 3338319 -179076923 + LTR7 LTR ERV1 1 448 -2 1663 101 5 0 chr6 3338321 3338529 -179076713 - AluSx SINE Alu -103 209 1 953 213 0 0 chr6 3338534 3338703 -179076539 - FRAM SINE Alu -7 169 1 2492 90 0 0 chr6 3338844 3339154 -179076088 + AluY SINE Alu 1 310 -1 245 297 14 0 chr6 3339176 3339250 -179075992 - L3 LINE CR1 -75 1502 1428 485 271 39 54 chr6 3339278 3339481 -179075761 - MIR SINE MIR -50 212 13 254 164 36 36 chr6 3339482 3339537 -179075705 + MLT1E3 LTR MaLR 1 55 -569 3011 125 57 13 chr6 3339537 3340126 -179075116 - MER4B LTR ERV1 0 779 1 1354 243 54 60 chr6 3340126 3340648 -179074594 + MLT1E3 LTR MaLR 52 652 -2 377 309 62 16 chr6 3340674 3340917 -179074325 - LTR16C LTR ERVL -5 486 233 2282 123 0 0 chr6 3342209 3342517 -179072725 - AluSx SINE Alu -4 308 1 333 47 0 0 chr6 3342789 3342832 -179072410 + (TATG)n Simple_repeat Simple_repeat 2 44 0 2018 67 0 31 chr6 3342832 3343087 -179072155 - AluY SINE Alu -26 285 39 2385 59 0 0 chr6 3343628 3343900 -179071342 + AluY SINE Alu 1 272 -39 185 156 0 22 chr6 3345359 3345404 -179069838 + (CCCCAG)n Simple_repeat Simple_repeat 3 46 0 342 0 0 0 chr6 3346341 3346379 -179068863 + (TG)n Simple_repeat Simple_repeat 2 39 0 742 241 14 14 chr6 3346489 3346696 -179068546 + MER33 DNA MER1_type 5 211 -113 204 282 167 0 chr6 3346787 3346865 -179068377 - MIR SINE MIR -99 163 73 2507 62 0 3 chr6 3347151 3347455 -179067787 + AluY SINE Alu 1 303 -8 23 0 0 0 chr6 3349375 3349398 -179065844 + AT_rich Low_complexity Low_complexity 1 23 0 1460 141 38 0 chr6 3349568 3349781 -179065461 - AluSg/x SINE Alu -14 298 78 942 248 56 0 chr6 3350274 3350508 -179064734 + MIR SINE MIR 15 261 -1 268 123 0 35 chr6 3350524 3350581 -179064661 + (TCCC)n Simple_repeat Simple_repeat 4 58 0 23 0 0 0 chr6 3351086 3351109 -179064133 + GC_rich Low_complexity Low_complexity 1 23 0 327 253 84 65 chr6 3451307 3451461 -178963781 - L1ME4a LINE L1 -38 6083 5927 270 262 64 78 chr6 3452391 3452532 -178962710 + L2 LINE L2 3099 3237 -76 451 209 147 63 chr6 3454450 3454641 -178960601 + MER112 DNA MER1_type 53 259 -1 1091 203 48 73 chr6 3454646 3454976 -178960266 + MER58B DNA MER1_type 4 325 -16 585 199 0 0 chr6 3456598 3456769 -178958473 + (CA)n Simple_repeat Simple_repeat 2 172 0 323 296 0 0 chr6 3456787 3456885 -178958357 + (CA)n Simple_repeat Simple_repeat 1 98 0 238 125 0 47 chr6 3460416 3460480 -178954762 + (AGGGGG)n Simple_repeat Simple_repeat 3 63 0 208 247 43 54 chr6 3461263 3461356 -178953886 - MIR SINE MIR -46 216 125 252 0 0 0 chr6 3461539 3461567 -178953675 + (A)n Simple_repeat Simple_repeat 1 28 0 184 274 55 27 chr6 3462069 3462142 -178953100 + L2 LINE L2 3149 3223 -49 3494 181 9 12 chr6 3462564 3463229 -178952013 + L1MB1 LINE L1 5505 6167 -1 2295 198 8 25 chr6 3463882 3464393 -178950849 + L1MB3 LINE L1 5354 5855 -328 1731 138 41 3 chr6 3464454 3464773 -178950469 + L1MB3 LINE L1 5853 6183 0 227 224 66 40 chr6 3466491 3466567 -178948675 - MER103 DNA DNA -33 133 56 2360 93 6 3 chr6 3466604 3466915 -178948327 + AluSx SINE Alu 1 312 0 273 357 27 32 chr6 3468719 3468904 -178946338 - MIR SINE MIR -46 216 33 2346 109 0 10 chr6 3469519 3469832 -178945410 + AluSx SINE Alu 1 310 -2 2487 86 0 13 chr6 3470531 3470844 -178944398 + AluSg SINE Alu 1 309 -1 293 277 161 0 chr6 3470891 3471021 -178944221 + MIR SINE MIR 80 230 -32 287 248 109 20 chr6 3472062 3472163 -178943079 - MIR SINE MIR -87 175 66 2399 92 0 0 chr6 3473891 3474186 -178941056 + AluSx SINE Alu 1 295 -17 189 182 0 0 chr6 3475604 3475637 -178939605 - L2 LINE L2 -9 3304 3272 1143 219 98 19 chr6 3475706 3476021 -178939221 - MER58B DNA MER1_type -1 340 1 412 338 63 0 chr6 3476029 3476171 -178939071 + MIR SINE MIR 60 210 -52 701 251 72 43 chr6 3476226 3476297 -178938945 - MIR SINE MIR 0 262 195 729 174 39 45 chr6 3476297 3476475 -178938767 - MER104 DNA MER2_type -3 177 1 701 251 72 43 chr6 3476475 3476638 -178938604 - MIR SINE MIR -67 195 21 2891 180 39 2 chr6 3477429 3477969 -178937273 + MER68 LTR ERV1 3 562 0 431 136 19 29 chr6 3478083 3478186 -178937056 + GA-rich Low_complexity Low_complexity 2 103 0 182 293 171 37 chr6 3478228 3478310 -178936932 - L2 LINE L2 -42 3230 3138 915 227 96 9 chr6 3478350 3478579 -178936663 - MIR SINE MIR -11 251 3 203 325 103 88 chr6 3481118 3481438 -178933804 - L2 LINE L2 0 3272 2948 1240 192 42 0 chr6 3481539 3481753 -178933489 + MER58A DNA MER1_type 1 223 -1 2647 64 0 3 chr6 3483128 3483441 -178931801 - AluSq SINE Alu -1 312 1 192 179 0 0 chr6 3484431 3484470 -178930772 + (TG)n Simple_repeat Simple_repeat 1 39 0 807 307 65 3 chr6 3485180 3485489 -178929753 - MLT1I LTR MaLR 0 409 82 490 301 47 28 chr6 3486039 3486252 -178928990 + MIR SINE MIR 20 236 -26 1146 215 42 0 chr6 3487074 3487288 -178927954 + MER58A DNA MER1_type 1 223 -1 365 271 126 37 chr6 3487552 3487746 -178927496 + L1ME3A LINE L1 5754 5961 -204 286 355 89 23 chr6 3488214 3488428 -178926814 - L2 LINE L2 -404 2910 2683 2876 161 38 21 chr6 3489203 3489713 -178925529 + L1MB3 LINE L1 5613 6134 -49 1996 156 0 10 chr6 3489713 3490014 -178925228 + AluSx SINE Alu 1 298 -14 2876 161 38 21 chr6 3490014 3490061 -178925181 + L1MB3 LINE L1 6134 6179 -4 203 319 43 28 chr6 3491106 3491247 -178923995 - MIR3 SINE MIR -33 175 33 1773 231 104 29 chr6 3491634 3492193 -178923049 + L1MD3 LINE L1 7374 7974 -21 241 226 0 0 chr6 3492762 3492815 -178922427 + (AAATG)n Simple_repeat Simple_repeat 4 56 0 3144 158 19 73 chr6 3492853 3493471 -178921771 + L1MB3 LINE L1 5467 6038 -145 2342 108 0 0 chr6 3493471 3493778 -178921464 + AluSq SINE Alu 4 310 -3 3144 158 19 73 chr6 3493778 3493914 -178921328 + L1MB3 LINE L1 6038 6180 -3 410 353 64 5 chr6 3495707 3495894 -178919348 - L3 LINE CR1 -977 600 403 233 242 81 0 chr6 3495885 3495947 -178919295 + MIR3 SINE MIR 132 198 -10 * 515 340 68 42 chr6 3496030 3496415 -178918827 - L2 LINE L2 0 3313 2919 692 274 135 0 chr6 3496522 3496752 -178918490 + MLT1J LTR MaLR 1 261 -250 264 221 139 25 chr6 3496788 3496910 -178918332 + MLT1J LTR MaLR 376 511 0 1642 281 166 16 chr6 3496921 3497782 -178917460 - L2 LINE L2 -581 2733 1744 608 271 47 0 chr6 3497821 3498013 -178917229 - MER3 DNA MER1_type -8 201 1 265 330 0 10 chr6 3499105 3499208 -178916034 + L2 LINE L2 2686 2787 -527 3422 132 93 63 chr6 3500630 3500763 -178914479 + LTR1 LTR ERV1 13 140 -645 2244 95 41 0 chr6 3500763 3501058 -178914184 + AluSc SINE Alu 1 307 -2 3422 132 93 63 chr6 3501058 3501674 -178913568 + LTR1 LTR ERV1 140 785 0 328 246 228 0 chr6 3501678 3501792 -178913450 + MIR SINE MIR 82 221 -41 284 263 19 113 chr6 3501975 3502135 -178913107 + MIR SINE MIR 117 261 -1 189 0 0 0 chr6 3502937 3502958 -178912284 + (T)n Simple_repeat Simple_repeat 1 21 0 1841 166 3 16 chr6 3503238 3503545 -178911697 + AluJo SINE Alu 9 311 -1 2390 85 3 0 chr6 3504367 3504660 -178910582 - AluSq SINE Alu -19 294 1 282 286 77 16 chr6 3505041 3505167 -178910075 - MIR SINE MIR -46 162 34 297 107 58 223 chr6 3505485 3505542 -178909700 + L1MB4 LINE L1 6080 6108 -72 2319 111 13 0 chr6 3505542 3505848 -178909394 + AluSx SINE Alu 1 310 -2 297 107 58 223 chr6 3505848 3505911 -178909331 + L1MB4 LINE L1 6108 6180 0 198 311 67 25 chr6 3506312 3506431 -178908811 + L2 LINE L2 2256 2379 -935 211 351 84 15 chr6 3506627 3506829 -178908413 + L2 LINE L2 2555 2770 -544 264 393 27 0 chr6 3508365 3508477 -178906765 - MIR SINE MIR -61 147 33 2199 99 7 17 chr6 3509461 3509763 -178905479 + AluSg SINE Alu 1 299 -11 23 33 0 0 chr6 3510098 3510128 -178905114 + AT_rich Low_complexity Low_complexity 1 30 0 21 0 0 0 chr6 3510686 3510707 -178904535 + AT_rich Low_complexity Low_complexity 1 21 0 333 118 0 0 chr6 3511009 3511060 -178904182 + (TG)n Simple_repeat Simple_repeat 2 52 0 1125 181 59 0 chr6 3512456 3512660 -178902582 + MER58A DNA MER1_type 1 216 -8 324 329 39 7 chr6 3513007 3513162 -178902080 - MER117 DNA MER1_type -37 160 1 191 181 0 169 chr6 3515001 3515084 -178900158 - MIR3 SINE MIR -48 160 92 863 189 123 13 chr6 3515892 3516120 -178899122 + L1MB8 LINE L1 5926 6178 0 180 231 96 0 chr6 3516486 3516538 -178898704 + MIR SINE MIR 124 180 -82 349 289 72 62 chr6 3516767 3516961 -178898281 + MIR SINE MIR 23 218 -44 1842 213 82 25 chr6 3517082 3517560 -178897682 + MLT1D LTR MaLR 1 505 0 464 290 0 7 chr6 3517560 3517705 -178897537 - LTR33 LTR ERVL -11 510 367 207 0 0 0 chr6 3519204 3519227 -178896015 + (A)n Simple_repeat Simple_repeat 1 23 0 641 266 74 29 chr6 3519396 3519640 -178895602 + MIR SINE MIR 8 262 0 648 239 31 6 chr6 3522019 3522178 -178893064 + MER5A DNA MER1_type 1 163 -26 181 385 0 51 chr6 3523449 3523527 -178891715 - L3b LINE CR1 -7 1576 1503 198 280 0 32 chr6 3523689 3523782 -178891460 + L2 LINE L2 2487 2576 -738 256 167 26 64 chr6 3524238 3524316 -178890926 + LTR33A LTR ERVL 440 514 -9 212 287 111 37 chr6 3524374 3524482 -178890760 + L2 LINE L2 2585 2700 -614 2028 156 16 0 chr6 3525305 3525612 -178889630 + AluSx SINE Alu 1 312 0 562 272 32 10 chr6 3525697 3525979 -178889263 + L1ME4a LINE L1 5541 5870 -251 283 272 41 35 chr6 3526020 3526189 -178889053 + L1ME4a LINE L1 5952 6121 0 209 146 21 0 chr6 3528062 3528110 -178887132 + GA-rich Low_complexity Low_complexity 2 50 0 1149 230 0 9 chr6 3529149 3529375 -178885867 + MER58A DNA MER1_type 1 224 0 191 286 0 0 chr6 3529375 3529424 -178885818 + L2 LINE L2 3189 3237 -76 31 26 0 0 chr6 3529577 3529615 -178885627 + AT_rich Low_complexity Low_complexity 1 38 0 2604 60 7 0 chr6 3529765 3530066 -178885176 - AluY SINE Alu -8 303 1 403 301 74 25 chr6 3530134 3530297 -178884945 - MIR SINE MIR -6 256 86 283 290 75 37 chr6 3530670 3530777 -178884465 - MIR SINE MIR -56 152 42 186 143 0 0 chr6 3531138 3531173 -178884069 + (TTTC)n Simple_repeat Simple_repeat 2 36 0 321 354 82 10 chr6 3531541 3531747 -178883495 + MIR SINE MIR 16 236 -26 23 0 0 0 chr6 3533155 3533178 -178882064 + AT_rich Low_complexity Low_complexity 1 23 0 429 218 0 0 chr6 3533356 3533443 -178881799 + MER103 DNA DNA 35 121 -45 2878 133 58 0 chr6 3534046 3534542 -178880700 + L1MB3 LINE L1 5649 6173 -10 2487 99 3 0 chr6 3535267 3535579 -178879663 + AluSp SINE Alu 1 313 0 304 314 122 17 chr6 3536519 3536691 -178878551 - MIR SINE MIR -59 203 14 1001 269 134 5 chr6 3538090 3538507 -178876735 + L1ME2 LINE L1 5694 6164 0 2176 94 7 0 chr6 3538515 3538791 -178876451 + AluSx SINE Alu 1 278 -34 216 0 0 0 chr6 3538791 3538815 -178876427 + (TAAA)n Simple_repeat Simple_repeat 1 24 0 2205 101 17 0 chr6 3538816 3539104 -178876138 + AluSg SINE Alu 1 293 -17 464 299 0 22 chr6 3539756 3539893 -178875349 + C-rich Low_complexity Low_complexity 3 136 0 1698 158 80 19 chr6 3540176 3540537 -178874705 + MLT1B LTR MaLR 8 390 0 2043 102 62 0 chr6 3540641 3540916 -178874326 - AluSq SINE Alu -19 294 3 240 233 0 17 chr6 3541208 3541268 -178873974 + L2 LINE L2 3241 3299 -14 2355 78 0 38 chr6 3541878 3542198 -178873044 + AluY SINE Alu 1 308 -3 1380 103 0 0 chr6 3542228 3542402 -178872840 - AluSq SINE Alu -11 302 129 870 145 18 84 chr6 3543562 3543789 -178871453 - MER20 DNA MER1_type 0 219 8 225 114 139 101 chr6 3543793 3543872 -178871370 - MER5B DNA MER1_type -76 102 21 196 302 19 0 chr6 3544485 3544538 -178870704 - L2 LINE L2 -541 2773 2720 1852 157 42 37 chr6 3544730 3544908 -178870334 + MLT1B LTR MaLR 1 177 -213 2474 76 0 3 chr6 3544908 3545209 -178870033 + AluSg SINE Alu 1 300 -10 1852 157 42 37 chr6 3545209 3545412 -178869830 + MLT1B LTR MaLR 177 384 -6 2289 192 51 2 chr6 3546457 3546926 -178868316 + L1MB3 LINE L1 5690 6181 -2 382 179 0 0 chr6 3547710 3547777 -178867465 + MER45 DNA AcHobo 1515 1581 0 190 293 146 24 chr6 3549542 3549665 -178865577 - MIR SINE MIR -79 183 46 2310 90 3 7 chr6 3549683 3549982 -178865260 - AluSx SINE Alu -14 298 1 211 264 80 55 chr6 3550135 3550336 -178864906 - L2 LINE L2 -231 3041 2836 199 258 81 97 chr6 3550374 3550498 -178864744 - L2 LINE L2 -555 2759 2638 287 287 174 0 chr6 3550724 3550839 -178864403 + MIR3 SINE MIR 30 164 -44 282 290 23 76 chr6 3551497 3551628 -178863614 + L2 LINE L2 2678 2801 -513 467 301 33 99 chr6 3551668 3552030 -178863212 + L2 LINE L2 2910 3247 -25 2509 88 0 0 chr6 3552062 3552370 -178862872 - AluY SINE Alu -3 308 1 2454 79 0 13 chr6 3552380 3552685 -178862557 - AluSx SINE Alu -11 301 1 822 202 52 31 chr6 3552727 3552920 -178862322 + MER63A DNA MER1_type 12 208 -2 2345 80 0 6 chr6 3552965 3553276 -178861966 - AluY SINE Alu -2 309 1 249 57 0 0 chr6 3553368 3553403 -178861839 + (GGGAGA)n Simple_repeat Simple_repeat 3 37 0 363 314 84 58 chr6 3553670 3553896 -178861346 + L1MC4a LINE L1 5007 5238 -908 1050 282 96 23 chr6 3553917 3554503 -178860739 + L1MC4a LINE L1 5266 5824 -297 2471 74 0 0 chr6 3554790 3555087 -178860155 - AluSg SINE Alu -13 297 1 1967 122 3 0 chr6 3555692 3555979 -178859263 - AluSx SINE Alu -24 288 1 224 0 65 0 chr6 3556021 3556052 -178859190 + (TTTTG)n Simple_repeat Simple_repeat 2 34 0 1629 165 25 50 chr6 3556292 3556714 -178858528 + Tigger5 DNA MER2_type 1 2323 0 1787 136 0 26 chr6 3556803 3557113 -178858129 + AluJo SINE Alu 11 312 0 300 338 214 33 chr6 3557375 3557988 -178857254 + L3 LINE CR1 852 1575 -2 43 97 0 0 chr6 3560897 3561031 -178854211 + GC_rich Low_complexity Low_complexity 1 134 0 27 49 0 0 chr6 3561222 3561263 -178853979 + GC_rich Low_complexity Low_complexity 1 41 0 26 0 0 0 chr6 3561384 3561410 -178853832 + GC_rich Low_complexity Low_complexity 1 26 0 285 29 0 0 chr6 3561574 3561608 -178853634 + (TCC)n Simple_repeat Simple_repeat 1 34 0 22 0 0 0 chr6 3561707 3561729 -178853513 + GC_rich Low_complexity Low_complexity 1 22 0 303 241 13 13 chr6 3563122 3563201 -178852041 + MIR SINE MIR 184 262 0 556 234 101 32 chr6 3564171 3564359 -178850883 + L2 LINE L2 3113 3313 0 287 307 128 44 chr6 3564634 3564885 -178850357 + MER102b DNA MER1_type 67 338 -3 2136 82 21 7 chr6 3565884 3566175 -178849067 + AluSc SINE Alu 1 295 -14 270 0 0 0 chr6 3566184 3566214 -178849028 + (CA)n Simple_repeat Simple_repeat 2 31 0 4063 136 120 104 chr6 3566973 3567391 -178847851 + L1MC3 LINE L1 6685 7095 -690 245 273 39 0 chr6 3567391 3567468 -178847774 + MLT1F1 LTR MaLR 35 114 -453 4063 136 120 104 chr6 3567468 3568057 -178847185 + L1MC3 LINE L1 7095 7785 0 1901 155 8 137 chr6 3568106 3568270 -178846972 + MSTB LTR MaLR 1 184 -242 2390 57 0 0 chr6 3568270 3568569 -178846673 + AluY SINE Alu 1 299 -12 1901 155 8 137 chr6 3568569 3568893 -178846349 + MSTB LTR MaLR 184 426 0 2123 105 3 0 chr6 3568936 3569230 -178846012 - AluSp SINE Alu -16 297 3 1921 86 30 50 chr6 3569322 3569625 -178845617 - AluSp SINE Alu -16 297 1 252 264 153 0 chr6 3570166 3570238 -178845004 + L2 LINE L2 3230 3312 -1 186 43 0 0 chr6 3570453 3570476 -178844766 + (TTTTA)n Simple_repeat Simple_repeat 3 25 0 2142 97 3 0 chr6 3570482 3570770 -178844472 - AluSp SINE Alu -23 290 2 1957 239 79 5 chr6 3570827 3571371 -178843871 - L1MB8 LINE L1 -6 6172 5588 328 262 10 19 chr6 3571700 3571803 -178843439 - MLT1K LTR MaLR -8 580 479 2168 96 3 0 chr6 3572078 3572371 -178842871 + AluSp SINE Alu 2 295 -18 492 279 0 64 chr6 3572572 3572744 -178842498 + MIR SINE MIR 37 197 -65 310 254 62 102 chr6 3573341 3573422 -178841820 - MIR SINE MIR -55 207 124 1065 193 88 99 chr6 3573422 3573877 -178841365 + LTR7 LTR ERV1 1 450 0 310 254 62 102 chr6 3573877 3574010 -178841232 - MIR SINE MIR -138 124 1 609 279 96 21 chr6 3574897 3575177 -178840065 - MARNA DNA Mariner -111 475 175 2366 87 0 0 chr6 3575555 3575867 -178839375 - AluSx SINE Alu 0 312 1 352 287 38 96 chr6 3576528 3576655 -178838587 - MIR3 SINE MIR -8 200 88 2217 108 7 0 chr6 3576655 3576961 -178838281 + AluSp SINE Alu 1 308 -5 352 287 38 96 chr6 3576961 3577042 -178838200 - MIR3 SINE MIR -120 88 4 342 0 0 0 chr6 3577797 3577835 -178837407 + (CA)n Simple_repeat Simple_repeat 2 39 0 2075 89 4 0 chr6 3578045 3578379 -178836863 - AluY SINE Alu 0 335 1 2169 105 7 0 chr6 3578728 3579034 -178836208 + AluSq SINE Alu 1 308 -5 2203 101 0 0 chr6 3579207 3579504 -178835738 - AluY SINE Alu -14 297 1 24 32 0 0 chr6 3579963 3579994 -178835248 + AT_rich Low_complexity Low_complexity 1 31 0 197 306 32 0 chr6 3580128 3580190 -178835052 - L2 LINE L2 -1 3271 3208 332 212 288 30 chr6 3580452 3580584 -178834658 - MER5A DNA MER1_type -15 174 9 1803 152 27 3 chr6 3580791 3581088 -178834154 - AluJb SINE Alu -8 304 1 403 316 85 59 chr6 3581188 3581460 -178833782 - L1MC4a LINE L1 -1822 5986 5708 257 303 55 0 chr6 3581460 3581569 -178833673 - L1MC4a LINE L1 -856 5290 5176 209 241 316 0 chr6 3581804 3581883 -178833359 + MER5A DNA MER1_type 71 174 -15 1869 143 0 51 chr6 3581918 3582232 -178833010 - MER1B DNA MER1_type -13 326 29 491 293 103 33 chr6 3582942 3583184 -178832058 + L2 LINE L2 549 807 -2507 1271 269 16 22 chr6 3583184 3583555 -178831687 - MLT1A2 LTR MaLR -5 369 1 2330 182 25 0 chr6 3583555 3583962 -178831280 - MLT1A2-int LTR MaLR 0 1735 1319 1765 173 8 37 chr6 3583983 3584049 -178831193 - MLT1A2-int LTR MaLR -770 601 535 1957 95 0 18 chr6 3584049 3584357 -178830885 - AluSg SINE Alu 0 303 1 1765 173 8 37 chr6 3584357 3584641 -178830601 - MLT1A2-int LTR MaLR -836 535 260 675 126 36 0 chr6 3584632 3584743 -178830499 - MLT1A2-int LTR MaLR -1256 115 1 * 1131 182 70 134 chr6 3584743 3585052 -178830190 - MLT1B LTR MaLR 0 390 113 2169 115 0 3 chr6 3585052 3585357 -178829885 - AluSx SINE Alu -8 304 1 1131 182 70 134 chr6 3585357 3585464 -178829778 - MLT1B LTR MaLR -277 113 1 315 246 49 0 chr6 3586030 3586152 -178829090 + LTR33A LTR ERVL 260 394 -127 850 244 44 44 chr6 3586180 3586454 -178828788 - MER21B LTR ERV1 -125 738 465 1195 273 31 41 chr6 3586508 3586896 -178828346 - MER21B LTR ERV1 -382 481 98 479 217 16 50 chr6 3586869 3587017 -178828225 - MER21B LTR ERV1 -408 197 16 * 298 363 74 7 chr6 3587191 3587326 -178827916 + L2 LINE L2 3125 3268 -4 183 280 80 0 chr6 3587360 3587410 -178827832 - L2 LINE L2 -19 3294 3241 401 259 106 55 chr6 3587767 3587941 -178827301 + MIR SINE MIR 20 191 -62 252 330 64 0 chr6 3588937 3589031 -178826211 - L2 LINE L2 -34 3279 3180 2201 102 0 0 chr6 3589862 3590156 -178825086 - AluSx SINE Alu -18 294 1 381 276 67 8 chr6 3590572 3590706 -178824536 + MER5A DNA MER1_type 11 152 -37 3393 144 29 10 chr6 3590706 3591295 -178823947 + L1MB3 LINE L1 5500 6099 -84 260 88 0 0 chr6 3591386 3591420 -178823822 + Alu SINE Alu 252 285 -16 241 264 28 0 chr6 3591884 3591956 -178823286 + L2 LINE L2 2866 2939 -333 292 267 22 11 chr6 3592853 3592943 -178822299 - L2 LINE L2 -6 3266 3176 196 328 115 33 chr6 3592962 3593084 -178822158 - L2 LINE L2 -37 3235 3104 2108 116 0 0 chr6 3593187 3593480 -178821762 - AluSx SINE Alu -19 293 1 22 35 0 0 chr6 3593482 3593511 -178821731 + AT_rich Low_complexity Low_complexity 1 29 0 344 191 296 0 chr6 3594123 3594238 -178821004 + MER5B DNA MER1_type 30 178 0 368 171 29 86 chr6 3594355 3594460 -178820782 + MER5A DNA MER1_type 14 112 -77 1446 201 97 41 chr6 3594536 3594733 -178820509 + MLT1C LTR MaLR 1 185 -282 2068 150 18 48 chr6 3594733 3594812 -178820430 - L1MA5A LINE L1 -6 6291 6211 3123 121 77 16 chr6 3594812 3595309 -178819933 + MER1A DNA MER1_type 1 527 0 2068 150 18 48 chr6 3595309 3595629 -178819613 - L1MA5A LINE L1 -86 6211 5904 1446 201 97 41 chr6 3595629 3595873 -178819369 + MLT1C LTR MaLR 185 467 0 1434 253 107 15 chr6 3596596 3597122 -178818120 - MER90 LTR ERV1 0 575 2 403 220 53 0 chr6 3597436 3597521 -178817721 - MLT1B LTR MaLR -195 195 115 1839 148 25 0 chr6 3597521 3597805 -178817437 - AluSx SINE Alu -21 291 1 403 220 53 0 chr6 3597805 3597826 -178817416 - MLT1B LTR MaLR -275 115 97 2166 114 0 19 chr6 3598280 3598595 -178816647 + AluSg SINE Alu 1 309 -1 285 333 101 0 chr6 3598786 3598915 -178816327 + MIR SINE MIR 51 192 -70 510 260 31 0 chr6 3599139 3599266 -178815976 - MIR3 SINE MIR -31 177 47 689 253 78 66 chr6 3599357 3599614 -178815628 - MIR SINE MIR -1 261 2 639 148 191 37 chr6 3599632 3599683 -178815559 + MER5A DNA MER1_type 1 43 -146 1462 179 14 133 chr6 3599683 3600047 -178815195 + MLT1A1 LTR MaLR 1 312 -53 2079 111 7 0 chr6 3600047 3600344 -178814898 + AluSp SINE Alu 1 299 -14 1462 179 14 133 chr6 3600344 3600393 -178814849 + MLT1A1 LTR MaLR 312 365 0 639 148 191 37 chr6 3600393 3600503 -178814739 + MER5A DNA MER1_type 43 187 -2 507 121 38 30 chr6 3601013 3601145 -178814097 + CT-rich Low_complexity Low_complexity 4 136 0 2264 86 0 13 chr6 3601955 3602269 -178812973 + AluY SINE Alu 1 310 -1 1052 198 58 133 chr6 3602477 3602877 -178812365 + MLT1A2 LTR MaLR 5 374 0 307 115 19 19 chr6 3602877 3602929 -178812313 + MLT1A2-int LTR MaLR 5 56 -1315 1735 180 62 36 chr6 3603150 3603196 -178812046 - MER74A LTR ERVL -40 518 475 1930 122 0 21 chr6 3603196 3603505 -178811737 + AluSp SINE Alu 1 303 0 1735 180 62 36 chr6 3603505 3603841 -178811401 - MER74A LTR ERVL -83 475 125 311 255 38 38 chr6 3604381 3604487 -178810755 - MIR SINE MIR -55 207 102 1608 135 4 0 chr6 3604858 3605087 -178810155 + MER30 DNA MER1_type 1 230 0 2498 43 0 0 chr6 3605612 3605914 -178809328 - AluY SINE Alu -9 302 1 249 298 74 70 chr6 3606460 3606718 -178808524 - L1M4c LINE L1 -4803 1581 1323 195 129 0 0 chr6 3606719 3606750 -178808492 + (GAA)n Simple_repeat Simple_repeat 2 32 0 393 315 27 0 chr6 3606793 3606904 -178808338 + MIR SINE MIR 78 191 -71 556 250 56 35 chr6 3607196 3607428 -178807814 + HAL1 LINE L1 1314 1550 -957 798 244 168 74 chr6 3607477 3608150 -178807092 + HAL1 LINE L1 1648 2383 -124 315 186 0 17 chr6 3608783 3608842 -178806400 - MLT1I LTR MaLR -42 367 310 226 250 36 0 chr6 3608982 3609038 -178806204 + MLT1I LTR MaLR 73 130 -279 255 253 137 11 chr6 3609039 3609134 -178806108 - MLT1I LTR MaLR -272 137 31 1237 110 74 258 chr6 3609139 3609693 -178805549 - LTR12 LTR ERV1 -208 506 55 970 145 36 67 chr6 3609695 3609888 -178805354 - LTR12 LTR ERV1 -527 187 1 356 295 104 23 chr6 3610785 3610958 -178804284 + MIR3 SINE MIR 5 191 -17 299 259 27 27 chr6 3610985 3611097 -178804145 + GA-rich Low_complexity Low_complexity 2 113 0 273 314 118 0 chr6 3611337 3611490 -178803752 - MIR SINE MIR 0 262 92 1074 281 102 14 chr6 3611552 3611994 -178803248 - L1MC/D LINE L1 -2011 5797 5317 305 333 51 39 chr6 3612009 3612243 -178802999 - L1MC/D LINE L1 -843 5303 5067 237 263 66 136 chr6 3612246 3612489 -178802753 - LTR33 LTR ERVL -2 519 294 302 301 74 66 chr6 3612821 3612924 -178802318 - L1MC/D LINE L1 -1211 4935 4834 2082 109 10 0 chr6 3612924 3613217 -178802025 - AluSg SINE Alu -14 296 1 302 301 74 66 chr6 3613217 3613505 -178801737 - L1MC/D LINE L1 -1312 4834 4541 2138 235 49 42 chr6 3613521 3613615 -178801627 + L1MC4 LINE L1 7316 7408 -634 1231 218 45 77 chr6 3613615 3613992 -178801250 + MLT1A1 LTR MaLR 1 365 0 2138 235 49 42 chr6 3613992 3614618 -178800624 + L1MC4 LINE L1 7408 8030 -12 346 248 85 31 chr6 3615105 3615234 -178800008 - MIR SINE MIR -7 255 120 270 0 0 0 chr6 3615814 3615844 -178799398 + (TG)n Simple_repeat Simple_repeat 1 30 0 411 73 0 0 chr6 3615844 3615899 -178799343 + (GA)n Simple_repeat Simple_repeat 2 56 0 2368 126 91 2 chr6 3616122 3616518 -178798724 + MSTB1 LTR MaLR 2 432 0 491 318 97 24 chr6 3616538 3616902 -178798340 + LTR16A1 LTR ERVL 73 442 -15 384 274 60 8 chr6 3618158 3618275 -178796967 + MIR SINE MIR 139 261 -1 205 167 44 44 chr6 3618337 3618427 -178796815 + (TATAA)n Simple_repeat Simple_repeat 2 91 0 670 147 0 0 chr6 3618447 3618542 -178796700 - AluJ/FLAM SINE Alu -216 96 2 21 0 0 0 chr6 3618543 3618564 -178796678 + AT_rich Low_complexity Low_complexity 1 21 0 366 23 0 0 chr6 3619683 3619726 -178795516 + (TATG)n Simple_repeat Simple_repeat 2 44 0 2012 105 0 11 chr6 3619727 3620012 -178795230 - AluSc SINE Alu -27 282 1 1637 182 4 0 chr6 3620022 3620302 -178794940 - AluJo SINE Alu -26 286 6 189 0 0 0 chr6 3620529 3620550 -178794692 + (CA)n Simple_repeat Simple_repeat 1 21 0 252 416 0 0 chr6 3620895 3621068 -178794174 + C-rich Low_complexity Low_complexity 1 173 0 * 280 235 16 53 chr6 3620952 3621139 -178794103 + CT-rich Low_complexity Low_complexity 1 180 0 * 344 354 0 17 chr6 3621117 3621371 -178793871 + C-rich Low_complexity Low_complexity 1 249 0 384 260 0 44 chr6 3621413 3621594 -178793648 + C-rich Low_complexity Low_complexity 2 174 0 352 298 6 28 chr6 3621619 3621800 -178793442 + C-rich Low_complexity Low_complexity 2 178 0 202 309 52 0 chr6 3622395 3622492 -178792750 + MIR3 SINE MIR 86 187 -21 691 232 87 68 chr6 3623886 3624196 -178791046 - HAL1b LINE L1 -234 1114 799 2107 187 44 22 chr6 3624201 3624651 -178790591 + MLT1C LTR MaLR 8 467 0 320 301 0 42 chr6 3624654 3624797 -178790445 - HAL1b LINE L1 -549 799 663 252 185 0 0 chr6 3624805 3624859 -178790383 + CT-rich Low_complexity Low_complexity 4 57 0 243 284 11 42 chr6 3625497 3625592 -178789650 - MIR3 SINE MIR -6 202 111 2128 121 142 16 chr6 3626103 3626483 -178788759 - MSTA LTR MaLR 0 428 1 380 221 123 16 chr6 3626923 3627045 -178788197 + L2 LINE L2 3138 3272 0 295 265 128 0 chr6 3627175 3627277 -178787965 - MLT1J2 LTR MaLR -54 396 282 379 239 72 42 chr6 3628155 3628418 -178786824 + L1M2 LINE L1 5197 5473 -727 333 319 62 35 chr6 3628735 3628992 -178786250 + L2 LINE L2 2827 3090 -182 372 252 107 0 chr6 3630065 3630168 -178785074 - MER91C DNA MER1_type -26 114 1 367 229 24 0 chr6 3630686 3630769 -178784473 + LTR16C LTR ERVL 405 489 -2 260 320 20 60 chr6 3630771 3630921 -178784321 + MIR SINE MIR 99 242 -20 209 108 27 0 chr6 3631105 3631143 -178784099 + (CAA)n Simple_repeat Simple_repeat 1 39 0 1056 206 0 0 chr6 3632199 3632393 -178782849 - MER58A DNA MER1_type -2 222 29 1701 167 53 35 chr6 3632459 3632539 -178782703 + MER7A DNA MER2_type 2 79 -2959 2081 108 10 0 chr6 3632539 3632834 -178782408 - AluSp SINE Alu -15 298 1 1701 167 53 35 chr6 3632834 3633094 -178782148 + MER7A DNA MER2_type 79 346 0 601 280 6 34 chr6 3633393 3633568 -178781674 + MIR SINE MIR 34 203 -59 248 231 39 0 chr6 3633613 3633665 -178781577 + L2 LINE L2 3169 3222 -50 231 247 156 0 chr6 3633954 3634031 -178781211 - MIR SINE MIR -66 196 108 572 272 119 98 chr6 3634138 3634191 -178781051 - L2 LINE L2 0 3272 3222 2208 182 36 77 chr6 3634191 3634724 -178780518 - MLT2B2 LTR ERVL 0 515 5 572 272 119 98 chr6 3634724 3635049 -178780193 - L2 LINE L2 -50 3222 2886 266 343 170 24 chr6 3635099 3635388 -178779854 - L2 LINE L2 -463 2851 2521 2167 157 10 20 chr6 3636384 3636778 -178778464 - L1MA8 LINE L1 -8 6283 5894 319 148 49 0 chr6 3637177 3637238 -178778004 - MLT1B LTR MaLR 0 390 327 2689 170 15 0 chr6 3637238 3637709 -178777533 - MLT1B-int LTR MaLR -892 479 2 2153 164 46 0 chr6 3637710 3638083 -178777159 - MLT1B LTR MaLR 0 390 1 1782 179 15 133 chr6 3638500 3639087 -178776155 + MLT2B1 LTR ERVL 3 520 0 946 282 51 0 chr6 3639198 3639514 -178775728 + L2 LINE L2 1878 2209 -1105 722 274 112 34 chr6 3639521 3639904 -178775338 - LTR16A LTR ERVL -12 438 26 657 287 72 5 chr6 3641385 3641608 -178773634 + MIR SINE MIR 25 262 0 1698 73 0 0 chr6 3641663 3641882 -178773360 + L1PA8 LINE L1 5954 6172 0 295 272 33 87 chr6 3643447 3643575 -178771667 + MIR SINE MIR 35 154 -62 27 0 0 0 chr6 3644678 3644705 -178770537 + AT_rich Low_complexity Low_complexity 1 27 0 2195 93 0 13 chr6 3645255 3645557 -178769685 - AluSx SINE Alu -14 298 1 301 271 94 10 chr6 3646145 3646360 -178768882 - L1MC4a LINE L1 -166 5955 5723 357 325 44 10 chr6 3646730 3646933 -178768309 - LTR16C LTR ERVL -27 464 255 1957 159 60 5 chr6 3647715 3648085 -178767157 - MLT1B LTR MaLR 0 390 1 231 170 0 0 chr6 3648157 3648204 -178767038 + CT-rich Low_complexity Low_complexity 2 48 0 569 157 52 11 chr6 3648212 3648484 -178766758 + (TCTA)n Simple_repeat Simple_repeat 1 283 0 704 262 33 11 chr6 3648535 3648718 -178766524 - MIR SINE MIR -59 203 17 660 309 97 78 chr6 3648776 3649911 -178765331 - L1MEc LINE L1 -3159 3056 1934 1377 195 31 14 chr6 3649979 3650271 -178764971 + AluJo SINE Alu 1 297 -15 278 132 0 94 chr6 3650349 3650402 -178764840 - MLT2B1 LTR ERVL 0 520 350 207 169 42 0 chr6 3650405 3650476 -178764766 + (TA)n Simple_repeat Simple_repeat 1 74 0 2261 172 67 26 chr6 3650480 3650940 -178764302 - MLT2B1 LTR ERVL -41 479 1 402 182 76 84 chr6 3651908 3652001 -178763241 + MIR SINE MIR 3 97 -111 1388 179 100 56 chr6 3652001 3652431 -178762811 + LTR7 LTR ERV1 2 450 0 402 182 76 84 chr6 3652431 3652482 -178762760 + MIR SINE MIR 97 147 -61 403 130 26 0 chr6 3652584 3652661 -178762581 + GA-rich Low_complexity Low_complexity 3 81 0 2298 58 0 3 chr6 3652724 3653017 -178762225 + AluY SINE Alu 2 293 -18 1398 56 0 0 chr6 3654680 3654860 -178760382 + (TTC)n Simple_repeat Simple_repeat 1 180 0 1187 174 0 126 chr6 3654884 3655201 -178760041 - AluJo SINE Alu -6 306 30 1970 199 80 45 chr6 3655476 3656106 -178759136 - L1M4 LINE L1 -2608 3538 2909 5308 223 35 30 chr6 3656106 3658257 -178756985 - L1MD2 LINE L1 0 6753 3237 2388 253 24 28 chr6 3658256 3659182 -178756060 - L1MD2 LINE L1 -3265 3275 2401 * 693 186 0 90 chr6 3659183 3659294 -178755948 - AluJo SINE Alu -178 134 37 2362 74 10 7 chr6 3659294 3659593 -178755649 + AluY SINE Alu 1 300 -11 693 186 0 90 chr6 3659593 3659626 -178755616 - AluJo SINE Alu -275 37 3 1406 228 24 19 chr6 3659694 3660187 -178755055 - L1MD2 LINE L1 -5028 1515 1020 971 251 3 38 chr6 3660193 3660484 -178754758 + L1MB5 LINE L1 3439 3719 -2427 402 185 0 0 chr6 3660588 3660669 -178754573 + (TGGA)n Simple_repeat Simple_repeat 1 81 0 1653 214 12 3 chr6 3660949 3661295 -178753947 + L1MB5 LINE L1 4931 5279 -867 1625 224 26 28 chr6 3661294 3661447 -178753795 + L1MA9 LINE L1 5852 6004 -308 * 369 0 0 0 chr6 3661447 3661488 -178753754 + (TG)n Simple_repeat Simple_repeat 2 42 0 1625 224 26 28 chr6 3661488 3661758 -178753484 + L1MA9 LINE L1 6004 6274 -38 * 4049 190 43 29 chr6 3661749 3662644 -178752598 + L1MB5 LINE L1 5266 6165 -9 1564 154 104 48 chr6 3662649 3663005 -178752237 + L1MC3 LINE L1 7346 7721 -64 327 250 11 11 chr6 3663277 3663369 -178751873 - L1MD2 LINE L1 -5631 899 808 258 355 0 28 chr6 3663600 3663741 -178751501 - L1MD2 LINE L1 -6202 338 202 195 129 0 0 chr6 3663743 3663774 -178751468 + (A)n Simple_repeat Simple_repeat 1 31 0 613 311 40 20 chr6 3664534 3664785 -178750457 - MARNA DNA Mariner -200 386 131 245 209 0 0 chr6 3664779 3664822 -178750420 + MARNA DNA Mariner 466 508 -78 * 330 231 33 11 chr6 3664971 3665062 -178750180 - MLT1J LTR MaLR -1 510 418 239 113 19 0 chr6 3665146 3665199 -178750043 + T-rich Low_complexity Low_complexity 1 54 0 262 172 16 78 chr6 3665199 3665263 -178749979 - MLT1J LTR MaLR -449 62 3 408 191 0 0 chr6 3665683 3665767 -178749475 + (TCCA)n Simple_repeat Simple_repeat 2 85 0 243 0 0 0 chr6 3665836 3665863 -178749379 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 570 282 139 14 chr6 3666872 3667088 -178748154 - MIR SINE MIR -18 244 2 283 173 0 0 chr6 3667168 3667220 -178748022 - L2 LINE L2 -3 3310 3259 2141 193 24 39 chr6 3667253 3667788 -178747454 - MER74A LTR ERVL -30 528 2 327 25 0 0 chr6 3667841 3667881 -178747361 + (TG)n Simple_repeat Simple_repeat 2 41 0 2474 112 80 39 chr6 3668621 3668726 -178746516 + MSTA LTR MaLR 1 100 -328 2389 59 3 31 chr6 3668726 3669046 -178746196 - AluY SINE Alu 0 311 1 2474 112 80 39 chr6 3669046 3669351 -178745891 + MSTA LTR MaLR 100 428 0 1078 283 28 12 chr6 3669602 3669924 -178745318 - MLT1G1 LTR MaLR -206 389 63 354 98 0 0 chr6 3670246 3670297 -178744945 + (TG)n Simple_repeat Simple_repeat 1 51 0 2243 169 60 0 chr6 3670975 3671377 -178743865 + MSTB LTR MaLR 1 426 0 630 192 52 159 chr6 3671482 3671790 -178743452 - MER21B LTR ERV1 -566 297 23 298 223 11 53 chr6 3671848 3671942 -178743300 + HsTC2 DNA Tc2 13 102 -1796 714 254 59 21 chr6 3671953 3672271 -178742971 + HsTC2 DNA Tc2 1283 1898 0 316 285 79 62 chr6 3672271 3672895 -178742347 - L1ME4a LINE L1 -222 5899 5259 211 304 0 14 chr6 3673782 3673851 -178741391 - MIR SINE MIR -6 256 189 264 150 0 0 chr6 3674078 3674118 -178741124 - Tigger3(Golem) DNA MER2_type -2 3027 2988 223 308 8 34 chr6 3674124 3674241 -178741001 - L2 LINE L2 -574 2740 2627 242 222 14 14 chr6 3674391 3674463 -178740779 + CT-rich Low_complexity Low_complexity 2 73 0 267 180 41 25 chr6 3674474 3674596 -178740646 + CT-rich Low_complexity Low_complexity 2 125 0 507 186 207 21 chr6 3676060 3676200 -178739042 - MER5A DNA MER1_type 0 189 24 201 294 272 0 chr6 3676455 3676591 -178738651 + MIR SINE MIR 20 192 -70 212 203 219 0 chr6 3676912 3676976 -178738266 - MIR SINE MIR -96 166 89 1212 75 149 11 chr6 3677025 3677199 -178738043 - AluJo SINE Alu -24 288 91 300 297 89 10 chr6 3677199 3677300 -178737942 - MIR SINE MIR -56 152 44 285 297 129 43 chr6 3678057 3678266 -178736976 - L2 LINE L2 -14 3299 3073 231 189 0 0 chr6 3678276 3678329 -178736913 + (TG)n Simple_repeat Simple_repeat 2 54 0 233 281 22 52 chr6 3678395 3678530 -178736712 - L2 LINE L2 -216 3097 2967 2388 75 7 0 chr6 3678717 3679024 -178736218 - AluY SINE Alu -2 309 1 2190 96 4 0 chr6 3680822 3681103 -178734139 + AluSq SINE Alu 14 295 -18 247 258 247 0 chr6 3682413 3682510 -178732732 - MIR SINE MIR -81 181 61 2574 58 0 6 chr6 3682517 3682830 -178732412 - AluY SINE Alu 0 311 1 198 298 0 18 chr6 3684467 3684524 -178730718 + L2 LINE L2 3136 3191 -81 615 197 213 6 chr6 3684946 3685129 -178730113 + L1ME2 LINE L1 5943 6163 -1 281 279 196 6 chr6 3685370 3685549 -178729693 - L1ME LINE L1 -332 5789 5577 900 254 123 28 chr6 3686017 3686376 -178728866 + MLT1L LTR MaLR 207 599 -16 237 219 127 34 chr6 3686504 3686625 -178728617 - L1 LINE L1 -1113 5033 4908 389 304 147 16 chr6 3686865 3687355 -178727887 - L1 LINE L1 -1535 4611 4058 311 281 61 0 chr6 3687614 3687728 -178727514 - HAL1b LINE L1 -611 737 617 273 278 131 25 chr6 3687732 3687977 -178727265 - HAL1b LINE L1 -765 583 313 252 0 0 0 chr6 3688072 3688100 -178727142 + (TC)n Simple_repeat Simple_repeat 1 28 0 339 276 122 39 chr6 3689162 3689343 -178725899 + MIR SINE MIR 12 207 -55 2745 214 72 89 chr6 3689686 3690381 -178724861 - L1MC5 LINE L1 -45 7916 7253 222 37 0 0 chr6 3690381 3690408 -178724834 + (TC)n Simple_repeat Simple_repeat 1 27 0 2745 214 72 89 chr6 3690408 3691073 -178724169 - L1MC5 LINE L1 -708 7253 6578 1815 184 70 6 chr6 3692113 3692456 -178722786 - MLT1A1 LTR MaLR 0 365 1 2174 120 7 3 chr6 3692715 3693015 -178722227 + AluSx SINE Alu 1 301 -11 790 142 0 108 chr6 3693344 3693492 -178721750 + FLAM_A SINE Alu 1 132 -1 468 270 8 0 chr6 3693539 3693665 -178721577 - MER103 DNA DNA -36 130 4 383 240 20 89 chr6 3694759 3694905 -178720337 - L2 LINE L2 -36 3277 3142 254 306 209 0 chr6 3694912 3695046 -178720196 - MER5A DNA MER1_type -6 183 22 577 268 6 58 chr6 3695133 3695401 -178719841 - L2 LINE L2 -311 3002 2748 1853 247 18 26 chr6 3695417 3695571 -178719671 + L1ME1 LINE L1 5669 5823 -343 2223 115 0 3 chr6 3695571 3695883 -178719359 + AluSq SINE Alu 1 311 -2 1853 247 18 26 chr6 3695883 3696218 -178719024 + L1ME1 LINE L1 5823 6154 -12 22 0 0 0 chr6 3696218 3696240 -178719002 + AT_rich Low_complexity Low_complexity 1 22 0 324 299 56 0 chr6 3696287 3696394 -178718848 - L2 LINE L2 -578 2736 2624 417 294 7 7 chr6 3696395 3696548 -178718694 - L1MEc LINE L1 -4725 1671 1519 225 345 54 40 chr6 3696796 3696944 -178718298 - MIR3 SINE MIR -40 168 19 23 0 0 0 chr6 3698338 3698361 -178716881 + AT_rich Low_complexity Low_complexity 1 23 0 295 305 169 7 chr6 3698642 3698796 -178716446 + MER5A DNA MER1_type 7 185 -4 467 321 72 11 chr6 3699385 3699600 -178715642 - MIR SINE MIR -24 238 11 203 211 0 0 chr6 3699665 3699703 -178715539 - L2 LINE L2 -5 3267 3230 230 316 45 7 chr6 3700377 3700532 -178714710 + (TATATG)n Simple_repeat Simple_repeat 6 166 0 639 288 123 5 chr6 3702377 3702596 -178712646 - MIR SINE MIR -13 249 5 1901 118 24 3 chr6 3702610 3702898 -178712344 - L1MA4A LINE L1 -4 6299 6006 12082 171 35 55 chr6 3702903 3704776 -178710466 - L1 LINE L1 -1365 5483 3573 1327 189 20 46 chr6 3704776 3705078 -178710164 - AluJo SINE Alu -6 306 13 12082 171 35 55 chr6 3705078 3708611 -178706631 - L1 LINE L1 -3275 3573 8 2494 173 19 17 chr6 3708796 3709259 -178705983 + MLT2C2 LTR ERVL 1 464 0 200 321 24 0 chr6 3710083 3710167 -178705075 + (CATA)n Simple_repeat Simple_repeat 1 86 0 24 0 0 0 chr6 3710295 3710319 -178704923 + AT_rich Low_complexity Low_complexity 1 24 0 365 39 20 0 chr6 3710941 3710992 -178704250 + (CA)n Simple_repeat Simple_repeat 1 52 0 1450 177 18 201 chr6 3711954 3712682 -178702560 + MER45R DNA AcHobo 4 598 -983 236 236 153 42 chr6 3714410 3714482 -178700760 + L2 LINE L2 3167 3246 -26 922 44 0 0 chr6 3715207 3715320 -178699922 - AluY SINE Alu -16 295 183 274 308 143 0 chr6 3715321 3715412 -178699830 + L2 LINE L2 3149 3252 -20 363 325 21 5 chr6 3715829 3716020 -178699222 + L2 LINE L2 2297 2490 -824 2127 112 0 7 chr6 3716240 3716544 -178698698 - AluSg SINE Alu -8 302 1 436 349 99 71 chr6 3716660 3717024 -178698218 + L2 LINE L2 2890 3263 -9 5558 55 7 0 chr6 3717930 3718615 -178696627 + L1PA8 LINE L1 5483 6172 0 242 313 40 30 chr6 3718617 3718716 -178696526 - MIR SINE MIR -93 115 16 978 191 27 45 chr6 3718961 3719181 -178696061 + MER20 DNA MER1_type 2 217 -2 1071 212 104 34 chr6 3719200 3719469 -178695773 + AluJo SINE Alu 2 289 -13 538 206 23 17 chr6 3719481 3719656 -178695586 + GA-rich Low_complexity Low_complexity 1 176 0 26 30 0 0 chr6 3721847 3721880 -178693362 + AT_rich Low_complexity Low_complexity 1 33 0 1304 164 5 5 chr6 3722894 3723114 -178692128 - AluJo SINE Alu -20 292 73 1662 115 13 0 chr6 3724633 3724868 -178690374 + AluSx SINE Alu 43 280 -32 243 0 0 0 chr6 3724868 3724895 -178690347 + (CAAT)n Simple_repeat Simple_repeat 4 30 0 297 206 29 0 chr6 3725020 3725122 -178690120 + (CA)n Simple_repeat Simple_repeat 2 106 0 250 222 19 0 chr6 3725150 3725204 -178690038 - MER4-int LTR ERV1 -5433 1165 1111 494 194 31 70 chr6 3725257 3725386 -178689856 + MER112 DNA MER1_type 128 251 -9 2337 94 0 0 chr6 3726452 3726760 -178688482 - AluSp SINE Alu -5 308 1 2107 179 47 38 chr6 3727603 3727656 -178687586 - L1MB3 LINE L1 0 6183 6132 2090 112 3 0 chr6 3727656 3727950 -178687292 - AluSq SINE Alu -18 295 1 2107 179 47 38 chr6 3727950 3728365 -178686877 - L1MB3 LINE L1 -51 6132 5711 1090 156 29 10 chr6 3729230 3729435 -178685807 - MLT1B LTR MaLR 0 390 182 230 109 0 219 chr6 3729442 3729506 -178685736 - MLT1B LTR MaLR -340 50 1 343 270 11 11 chr6 3729571 3729660 -178685582 + MER5A DNA MER1_type 18 106 -83 518 157 0 0 chr6 3730050 3730133 -178685109 + MER53 DNA DNA 107 189 0 300 277 36 0 chr6 3731380 3731463 -178683779 + L1MC4 LINE L1 6624 6709 -1333 332 83 73 0 chr6 3731491 3731587 -178683655 + (TA)n Simple_repeat Simple_repeat 1 103 0 1698 144 0 0 chr6 3731606 3731876 -178683366 - AluJb SINE Alu -27 285 16 317 288 161 0 chr6 3732231 3732349 -178682893 + MIR SINE MIR 25 161 -101 450 267 79 12 chr6 3734036 3734201 -178681041 - MLT1K LTR MaLR -24 564 389 2242 67 0 20 chr6 3734239 3734539 -178680703 + AluY SINE Alu 1 294 -17 2046 218 35 29 chr6 3734727 3735214 -178680028 + MER74A LTR ERVL 23 512 -46 2282 74 10 0 chr6 3735408 3735704 -178679538 - AluSx SINE Alu -13 299 1 515 305 110 13 chr6 3735811 3736047 -178679195 + MIR SINE MIR 4 262 0 4060 158 29 10 chr6 3736157 3736848 -178678394 - MER44D DNA MER2_type 0 705 2 431 276 32 42 chr6 3736909 3737220 -178678022 + L1MC4a LINE L1 5087 5394 -752 302 237 72 10 chr6 3737220 3737317 -178677925 - MLT1L LTR MaLR 0 615 513 245 338 0 0 chr6 3737535 3737606 -178677636 - MLT1J1 LTR MaLR -305 141 71 1063 262 144 63 chr6 3737636 3738259 -178676983 + MER21B LTR ERV1 23 696 -167 289 295 69 42 chr6 3738270 3738472 -178676770 - MER20B DNA MER1_type -4 215 5 233 310 14 0 chr6 3738527 3738598 -178676644 - MLT1L LTR MaLR -540 75 4 336 346 32 43 chr6 3738624 3738809 -178676433 + L1MC4a LINE L1 5420 5600 -562 2814 188 26 6 chr6 3738809 3739353 -178675889 + L1MB5 LINE L1 5613 6167 -7 336 346 32 43 chr6 3739353 3739443 -178675799 + L1MC4a LINE L1 5600 5689 -473 273 239 0 22 chr6 3739460 3739552 -178675690 + L1MC4 LINE L1 6614 6703 -1339 248 278 0 0 chr6 3739518 3739608 -178675634 - L1MC4 LINE L1 -1339 6703 6614 * 431 332 68 14 chr6 3739608 3739828 -178675414 + L1MC4a LINE L1 5667 5898 -1910 336 322 76 6 chr6 3739860 3740031 -178675211 + MIR SINE MIR 80 262 0 1785 172 0 0 chr6 3741030 3741321 -178673921 - AluJo SINE Alu -15 297 7 200 328 134 0 chr6 3742534 3742653 -178672589 + MIR SINE MIR 78 212 -50 852 193 59 5 chr6 3742708 3742895 -178672347 + L1MB4 LINE L1 5982 6178 -2 2150 260 91 38 chr6 3743121 3744486 -178670756 + L1ME3A LINE L1 4699 6136 -34 2235 109 3 0 chr6 3744509 3744820 -178670422 - AluSx SINE Alu 0 312 1 2114 184 0 13 chr6 3745115 3745506 -178669736 + L1MA8 LINE L1 3982 4367 -1779 5127 152 43 6 chr6 3745514 3746428 -178668814 + L1MA8 LINE L1 5323 6270 -21 4318 178 24 21 chr6 3746447 3747284 -178667958 + L1MB3 LINE L1 5293 6134 -49 2008 80 0 4 chr6 3747284 3747547 -178667695 + AluY SINE Alu 28 289 -22 4318 178 24 21 chr6 3747547 3747596 -178667646 + L1MB3 LINE L1 6134 6181 -2 326 275 29 80 chr6 3747820 3747958 -178667284 + L1ME4a LINE L1 5991 6121 0 198 118 0 0 chr6 3748865 3748899 -178666343 + (T)n Simple_repeat Simple_repeat 1 34 0 3842 240 49 20 chr6 3749848 3750230 -178665012 - MER45B DNA AcHobo -549 1032 663 2022 106 7 3 chr6 3750230 3750548 -178664694 - AluSg SINE Alu 0 319 1 3842 240 49 20 chr6 3750548 3750716 -178664526 - MER45B DNA AcHobo -918 663 501 2514 45 0 6 chr6 3750716 3751029 -178664213 + AluY SINE Alu 1 311 0 3842 240 49 20 chr6 3751029 3751478 -178663764 - MER45B DNA AcHobo -1080 501 1 350 265 163 21 chr6 3751956 3752288 -178662954 + HAL1 LINE L1 2009 2387 -120 2307 92 0 0 chr6 3752343 3752646 -178662596 - AluSx SINE Alu -9 303 1 2294 100 0 0 chr6 3752867 3753178 -178662064 - AluY SINE Alu 0 311 1 202 253 67 27 chr6 3753517 3753592 -178661650 - L2 LINE L2 -1 3271 3194 542 286 57 50 chr6 3753779 3754059 -178661183 + MLT1J LTR MaLR 229 510 -1 2337 78 113 0 chr6 3754059 3754394 -178660848 + MER51B LTR ERV1 1 373 -4 182 91 30 0 chr6 3755817 3755850 -178659392 + GA-rich Low_complexity Low_complexity 4 37 0 447 279 93 0 chr6 3756052 3756192 -178659050 - MER3 DNA MER1_type 0 209 57 648 205 93 9 chr6 3756476 3756659 -178658583 - MER20 DNA MER1_type -7 212 15 3438 182 44 4 chr6 3756950 3757626 -178657616 - L1MB2 LINE L1 -2 6169 5467 250 191 0 21 chr6 3757626 3757673 -178657569 - MLT1A1 LTR MaLR 0 365 320 2331 109 24 24 chr6 3757707 3758082 -178657160 + THE1C LTR MaLR 1 375 0 389 285 93 0 chr6 3758177 3758328 -178656914 - MLT1L LTR MaLR 0 615 451 213 330 54 18 chr6 3758715 3758827 -178656415 - L2 LINE L2 -4 3268 3153 203 161 0 0 chr6 3759735 3759766 -178655476 + T-rich Low_complexity Low_complexity 5 35 0 252 0 0 0 chr6 3760466 3760494 -178654748 + (CA)n Simple_repeat Simple_repeat 2 29 0 799 187 238 51 chr6 3761080 3761395 -178653847 - MLT1A2 LTR MaLR 0 374 1 433 256 89 28 chr6 3761421 3761601 -178653641 - MLT1L LTR MaLR -4 611 421 579 285 124 24 chr6 3761714 3761963 -178653279 - MLT1L LTR MaLR -341 274 1 304 310 35 44 chr6 3762488 3762691 -178652551 - L2 LINE L2 -187 3085 2885 1226 226 84 45 chr6 3762774 3763155 -178652087 - MSTD LTR MaLR 0 396 1 432 300 57 45 chr6 3764231 3764478 -178650764 - MIR SINE MIR 0 262 13 227 277 145 0 chr6 3764611 3764694 -178650548 + L2 LINE L2 3191 3285 -28 207 127 0 0 chr6 3765617 3765659 -178649583 + MIR SINE MIR 105 146 -62 348 276 23 0 chr6 3765693 3765780 -178649462 + MIR SINE MIR 70 158 -104 601 224 41 61 chr6 3766625 3766821 -178648421 - MER106A DNA MER1_type -43 193 2 1515 211 95 91 chr6 3766822 3767550 -178647692 + L1MC5 LINE L1 7199 7929 -32 188 278 83 53 chr6 3767857 3767990 -178647252 + MIR SINE MIR 10 146 -116 392 317 47 27 chr6 3768028 3768441 -178646801 - LTR67 LTR ERVL -35 522 24 187 323 0 0 chr6 3769002 3769067 -178646175 + MIR SINE MIR 158 222 -40 306 234 96 0 chr6 3770936 3771030 -178644212 + MIR SINE MIR 90 192 -70 7093 236 129 18 chr6 3771111 3773654 -178641588 + L1ME LINE L1 2389 5283 -881 212 59 29 0 chr6 3773654 3773688 -178641554 + (TCTA)n Simple_repeat Simple_repeat 4 38 0 7093 236 129 18 chr6 3773688 3773965 -178641277 + L1ME LINE L1 5283 5528 -636 188 299 164 28 chr6 3774046 3774094 -178641148 - MIR SINE MIR -57 205 165 393 22 0 0 chr6 3774094 3774140 -178641102 + (TTA)n Simple_repeat Simple_repeat 2 47 0 188 299 164 28 chr6 3774140 3774268 -178640974 - MIR SINE MIR -97 165 5 926 158 0 23 chr6 3774626 3774797 -178640445 - MER5A DNA MER1_type 0 189 23 339 280 26 90 chr6 3774855 3775044 -178640198 + MER5B DNA MER1_type 2 178 0 288 350 10 0 chr6 3775058 3775158 -178640084 + MER81 DNA DNA 1 101 -13 540 224 82 35 chr6 3775199 3775369 -178639873 - MER5B DNA MER1_type 0 178 1 38741 83 12 7 chr6 3776670 3782790 -178632452 - L1PA6 LINE L1 0 6154 11 2248 233 26 6 chr6 3782906 3783447 -178631795 + L1M4 LINE L1 3819 4370 -1776 582 338 103 11 chr6 3784436 3784803 -178630439 + LTR33A LTR ERVL 67 467 -56 748 121 0 0 chr6 3785488 3785604 -178629638 - L1MA7 LINE L1 -17 6274 6159 1650 203 27 63 chr6 3785954 3786531 -178628711 - L1MB7 LINE L1 0 6334 5792 395 381 55 25 chr6 3786536 3786940 -178628302 - L3 LINE CR1 -1048 529 114 1412 193 24 17 chr6 3787252 3787575 -178627667 - L1MD3 LINE L1 0 7995 7577 201 74 0 0 chr6 3788526 3788553 -178626689 + (AATTG)n Simple_repeat Simple_repeat 2 28 0 2131 99 11 3 chr6 3789337 3789620 -178625622 + AluSp SINE Alu 3 287 -26 79 70 0 0 chr6 3789681 3789837 -178625405 + AT_rich Low_complexity Low_complexity 1 156 0 305 281 22 0 chr6 3790242 3790331 -178624911 - MIR SINE MIR -55 207 117 1154 165 29 25 chr6 3791113 3791355 -178623887 - L1ME1 LINE L1 -116 6050 5808 1824 220 97 14 chr6 3791758 3792295 -178622947 - MLT1F1 LTR MaLR 0 567 1 340 349 38 17 chr6 3793332 3793570 -178621672 - L1MDa LINE L1 -3597 2532 2290 305 265 79 53 chr6 3793600 3793789 -178621453 - L1MDa LINE L1 -3904 2225 2032 22 0 0 0 chr6 3793880 3793902 -178621340 + AT_rich Low_complexity Low_complexity 1 22 0 369 292 56 26 chr6 3794100 3794333 -178620909 - L1MDa LINE L1 -4514 1615 1376 438 279 69 54 chr6 3794480 3795000 -178620242 - L1MDa LINE L1 -4916 1203 676 2745 29 0 13 chr6 3795537 3795852 -178619390 + AluY SINE Alu 1 311 0 22 35 0 0 chr6 3796384 3796413 -178618829 + AT_rich Low_complexity Low_complexity 1 29 0 2321 82 0 0 chr6 3796417 3796699 -178618543 - AluY SINE Alu -29 282 1 2037 226 100 28 chr6 3796721 3797301 -178617941 + L1MD3 LINE L1 6518 7139 -856 2002 94 66 28 chr6 3797343 3797631 -178617611 + AluSc SINE Alu 1 299 -10 2600 248 43 11 chr6 3798593 3799298 -178615944 + L1MC4a LINE L1 7082 7808 0 788 96 37 29 chr6 3799304 3799355 -178615887 - L1MA4 LINE L1 -133 6167 6118 2139 167 27 50 chr6 3799355 3799561 -178615681 + Tigger2a DNA MER2_type 2 211 -2497 1782 184 0 7 chr6 3799561 3799855 -178615387 - AluJo SINE Alu -16 296 5 2139 167 27 50 chr6 3799855 3800091 -178615151 + Tigger2a DNA MER2_type 211 434 0 788 96 37 29 chr6 3800091 3800175 -178615067 - L1MA4 LINE L1 -182 6118 6031 650 106 99 80 chr6 3800163 3800314 -178614928 + L1MA5 LINE L1 6144 6297 -3 * 32 26 0 0 chr6 3800867 3800906 -178614336 + AT_rich Low_complexity Low_complexity 1 39 0 3518 67 25 2 chr6 3802504 3802979 -178612263 + LTR19A LTR ERV1 1 486 0 308 299 45 19 chr6 3803023 3803180 -178612062 - L2 LINE L2 -33 3280 3120 2113 249 66 45 chr6 3803200 3803522 -178611720 + MER21B LTR ERV1 15 329 -534 2977 155 46 4 chr6 3803522 3804026 -178611216 - LTR45 LTR ERV1 0 525 1 2113 249 66 45 chr6 3804026 3804413 -178610829 + MER21B LTR ERV1 329 739 -124 185 184 102 0 chr6 3804460 3804509 -178610733 - L2 LINE L2 -248 3065 3012 398 321 22 0 chr6 3804873 3805010 -178610232 - MIR SINE MIR -24 238 99 278 211 53 0 chr6 3805505 3805562 -178609680 - MER91A DNA MER1_type -14 182 123 333 240 149 78 chr6 3805744 3805995 -178609247 + MIR SINE MIR 2 262 0 2649 192 58 97 chr6 3806173 3806929 -178608313 + MER50 LTR ERV1 1 727 -7 201 242 0 0 chr6 3807327 3807418 -178607824 + (TG)n Simple_repeat Simple_repeat 2 92 0 189 303 13 26 chr6 3807984 3808060 -178607182 - L2 LINE L2 -19 3294 3220 718 106 10 0 chr6 3808261 3808365 -178606877 - LTR12 LTR ERV1 -130 584 480 369 231 11 0 chr6 3808365 3808456 -178606786 - LTR30 LTR ERV1 -79 643 552 964 98 379 15 chr6 3808463 3808666 -178606576 - LTR12 LTR ERV1 -432 282 6 2311 140 65 0 chr6 3808666 3809038 -178606204 + MSTA LTR MaLR 33 428 0 958 305 70 40 chr6 3809052 3809722 -178605520 - L2 LINE L2 -257 3015 2328 601 329 133 16 chr6 3809725 3810227 -178605015 - L2 LINE L2 -1589 1725 1165 233 378 0 0 chr6 3810235 3810317 -178604925 + MIR SINE MIR 181 262 0 287 278 268 20 chr6 3810352 3810550 -178604692 - L2 LINE L2 -2145 1169 923 4488 192 51 36 chr6 3810556 3812065 -178603177 + L1MB3 LINE L1 4627 6177 -6 344 300 0 11 chr6 3812078 3812168 -178603074 + L1MC4 LINE L1 6614 6702 -1340 319 215 0 131 chr6 3812110 3812217 -178603025 - L1MC4 LINE L1 -1336 6706 6614 * 344 345 31 11 chr6 3812247 3812438 -178602804 - L2 LINE L2 -2393 921 727 1394 186 34 34 chr6 3813656 3813947 -178601295 - AluJo SINE Alu -21 291 1 310 348 89 26 chr6 3814009 3814311 -178600931 + L2 LINE L2 2909 3229 -43 656 314 83 4 chr6 3815545 3815787 -178599455 - MIR SINE MIR 0 262 2 1077 76 8 0 chr6 3815840 3815972 -178599270 + AluSq/x SINE Alu 1 133 -180 2158 119 13 6 chr6 3815975 3816286 -178598956 + AluSq SINE Alu 1 313 0 986 157 13 6 chr6 3816613 3816772 -178598470 + AluJb SINE Alu 134 293 -19 423 0 0 0 chr6 3816887 3816934 -178598308 + (TG)n Simple_repeat Simple_repeat 2 48 0 221 233 0 0 chr6 3816937 3816980 -178598262 + GA-rich Low_complexity Low_complexity 4 46 0 249 340 19 10 chr6 3817761 3817864 -178597378 - L2 LINE L2 -3 3310 3207 271 305 0 24 chr6 3818330 3818412 -178596830 + L2 LINE L2 3176 3255 -17 22 0 0 0 chr6 3818894 3818916 -178596326 + AT_rich Low_complexity Low_complexity 1 22 0 265 193 0 18 chr6 3819180 3819237 -178596005 + MLT1H LTR MaLR 6 61 -488 326 240 53 59 chr6 3819350 3819630 -178595612 + MLT1H LTR MaLR 229 549 0 325 292 42 33 chr6 3819686 3819806 -178595436 + L1MC/D LINE L1 5642 5762 -2046 1002 265 138 19 chr6 3819811 3820347 -178594895 + L1MC4a LINE L1 5519 6118 -1690 608 288 42 17 chr6 3820347 3820583 -178594659 + L2 LINE L2 1843 2084 -1230 482 249 130 23 chr6 3820710 3820887 -178594355 + L2 LINE L2 2072 2267 -1047 1545 184 4 15 chr6 3820891 3821163 -178594079 + AluJo SINE Alu 30 298 -14 2326 185 43 13 chr6 3822806 3823337 -178591905 + MER74A LTR ERVL 8 554 -4 7869 148 78 60 chr6 3824041 3825811 -178589431 - pTR5 LTR ERV1 -14 2424 65 640 267 51 33 chr6 3825960 3826293 -178588949 + Charlie8 DNA MER1_type 78 265 -2152 21 36 0 0 chr6 3827112 3827140 -178588102 + AT_rich Low_complexity Low_complexity 1 28 0 300 269 46 28 chr6 3828455 3828563 -178586679 - L2 LINE L2 0 3313 3204 1699 87 79 0 chr6 3832626 3832878 -178582364 - L1PB2 LINE L1 -2 6149 5878 269 311 44 0 chr6 3833111 3833201 -178582041 + MIR3 SINE MIR 104 197 -11 484 192 233 17 chr6 3835362 3835534 -178579708 + MIR SINE MIR 40 248 -14 1472 286 42 25 chr6 3836035 3836634 -178578608 - L1MC4a LINE L1 -128 7680 7072 184 255 0 0 chr6 3838619 3838666 -178576576 - L3 LINE CR1 -750 827 781 1211 101 39 119 chr6 3839193 3839285 -178575957 + L1 LINE L1 4557 4655 -1491 1721 164 87 0 chr6 3839285 3839572 -178575670 + AluJo SINE Alu 1 312 0 1211 101 39 119 chr6 3839572 3839765 -178575477 + L1 LINE L1 4655 4819 -1327 427 77 0 0 chr6 3839866 3839918 -178575324 + AluJ/FRAM SINE Alu 217 268 -44 886 97 0 0 chr6 3839919 3840033 -178575209 - AluSg SINE Alu -196 114 1 182 236 11 112 chr6 3840233 3840322 -178574920 + MER5A DNA MER1_type 49 128 -61 814 152 0 0 chr6 3840322 3840447 -178574795 + FRAM SINE Alu 39 163 -13 332 151 68 14 chr6 3840457 3840530 -178574712 - FLAM_A SINE Alu -27 106 30 524 287 32 43 chr6 3841829 3842017 -178573225 + L1ME4a LINE L1 5862 6047 -74 373 210 33 136 chr6 3843049 3843356 -178571886 - MER112 DNA MER1_type -6 254 1 318 146 24 122 chr6 3843489 3843571 -178571671 - LTR56 LTR ERV1 -176 269 196 324 128 39 64 chr6 3843585 3843663 -178571579 - LTR56 LTR ERV1 -369 76 1 709 219 30 25 chr6 3843664 3843865 -178571377 - L1ME1 LINE L1 -121 6045 5844 192 288 9 63 chr6 3844268 3844379 -178570863 + L2 LINE L2 2831 2935 -337 334 282 19 0 chr6 3844693 3844796 -178570446 + MER103 DNA DNA 54 158 -8 2258 79 0 7 chr6 3844970 3845250 -178569992 - AluSc SINE Alu -20 289 12 198 256 51 95 chr6 3846396 3846533 -178568709 + L2 LINE L2 3137 3267 -5 462 260 137 39 chr6 3847326 3847530 -178567712 - MER58A DNA MER1_type 0 224 1 306 284 0 21 chr6 3847562 3847657 -178567585 + L2 LINE L2 3221 3313 0 563 246 84 0 chr6 3848434 3848576 -178566666 - MER63A DNA MER1_type -8 202 49 517 292 99 9 chr6 3848625 3848859 -178566383 + MIR SINE MIR 6 262 0 733 299 53 73 chr6 3849632 3850164 -178565078 - LTR67 LTR ERVL -2 555 35 747 276 97 62 chr6 3850166 3850208 -178565034 - MLT1L LTR MaLR -6 609 570 2086 116 3 3 chr6 3850208 3850531 -178564711 + AluSx SINE Alu 1 323 0 747 276 97 62 chr6 3850531 3850650 -178564592 - MLT1L LTR MaLR -45 570 457 2416 115 0 0 chr6 3850650 3850962 -178564280 + AluSx SINE Alu 1 312 0 747 276 97 62 chr6 3850962 3851200 -178564042 - MLT1L LTR MaLR -158 457 194 611 301 5 0 chr6 3851376 3851562 -178563680 + MER117 DNA MER1_type 3 189 -8 781 263 46 29 chr6 3852156 3852396 -178562846 - MIR SINE MIR 0 262 19 275 218 65 99 chr6 3852443 3852578 -178562664 - MIR SINE MIR -76 132 27 399 212 146 22 chr6 3852771 3852908 -178562334 + MIR SINE MIR 90 243 -19 203 267 0 0 chr6 3853436 3853481 -178561761 + L2 LINE L2 3181 3225 -88 236 244 0 0 chr6 3853531 3853576 -178561666 + (TGGG)n Simple_repeat Simple_repeat 2 46 0 194 248 168 35 chr6 3854097 3854210 -178561032 - MIR SINE MIR -21 241 114 230 210 29 152 chr6 3854626 3854718 -178560524 + MER103 DNA DNA 36 107 -59 2474 88 0 3 chr6 3854718 3855026 -178560216 + AluSq SINE Alu 1 307 -6 230 210 29 152 chr6 3855026 3855071 -178560171 + MER103 DNA DNA 107 156 -10 180 348 0 14 chr6 3855557 3855626 -178559616 - MIR SINE MIR -125 83 16 359 248 34 34 chr6 3856810 3856927 -178558315 + MIR SINE MIR 1 117 -145 1539 252 88 13 chr6 3857076 3857600 -178557642 + MER115 DNA AcHobo 124 686 -7 871 196 36 0 chr6 3857761 3857929 -178557313 - AluJo SINE Alu -19 293 120 191 330 181 11 chr6 3858228 3858322 -178556920 + L2 LINE L2 3156 3265 -7 669 183 0 7 chr6 3858602 3858739 -178556503 - L1MA4 LINE L1 -4 6296 6161 312 232 24 56 chr6 3858843 3858968 -178556274 + L1ME4a LINE L1 5806 5926 -195 2204 136 3 0 chr6 3859107 3859417 -178555825 + AluSx SINE Alu 1 311 -1 228 243 49 135 chr6 3859601 3859786 -178555456 + MLT1J2 LTR MaLR 1 169 -281 387 259 49 0 chr6 3859843 3859957 -178555285 - MIR SINE MIR -41 221 103 22 35 0 0 chr6 3860107 3860136 -178555106 + AT_rich Low_complexity Low_complexity 1 29 0 1962 107 0 0 chr6 3860197 3860450 -178554792 + AluSq SINE Alu 1 253 -60 1958 160 21 27 chr6 3860561 3860937 -178554305 - THE1C LTR MaLR 0 375 2 496 97 14 0 chr6 3861335 3861407 -178553835 - MER58 DNA MER1_type -6 2414 2342 1166 84 0 0 chr6 3861458 3861600 -178553642 - AluSg/x SINE Alu -10 300 159 269 267 89 20 chr6 3861650 3861751 -178553491 - MLT1J LTR MaLR -1 510 403 625 119 0 0 chr6 3861968 3862052 -178553190 + AluSg/x SINE Alu 128 211 -99 202 61 61 0 chr6 3862054 3862087 -178553155 + A-rich Low_complexity Low_complexity 1 35 0 284 117 0 50 chr6 3862111 3862171 -178553071 + L1PB3 LINE L1 6096 6152 -2 436 260 167 0 chr6 3862222 3862372 -178552870 + MER5A DNA MER1_type 9 183 -6 472 257 135 7 chr6 3862388 3862536 -178552706 - MER5B DNA MER1_type -4 174 8 327 266 16 31 chr6 3864835 3864977 -178550265 + LTR16C LTR ERVL 332 457 0 2319 107 7 0 chr6 3866505 3866805 -178548437 + AluSq SINE Alu 1 302 -11 2261 95 0 17 chr6 3867473 3867768 -178547474 + AluSx SINE Alu 2 291 -21 752 252 174 60 chr6 3867818 3868271 -178546971 - MLT1J LTR MaLR -1 510 6 252 318 85 16 chr6 3869457 3869586 -178545656 - MIR SINE MIR -55 207 70 1523 199 117 103 chr6 3869601 3869906 -178545336 + MER21B LTR ERV1 13 312 -551 2386 88 0 0 chr6 3869906 3870202 -178545040 - AluY SINE Alu -14 297 2 1523 199 117 103 chr6 3870202 3870564 -178544678 + MER21B LTR ERV1 312 689 -174 355 252 41 61 chr6 3871229 3871376 -178543866 - MIR3 SINE MIR -52 156 13 225 152 43 0 chr6 3872131 3872177 -178543065 + (TATATG)n Simple_repeat Simple_repeat 1 48 0 342 315 0 22 chr6 3872177 3872269 -178542973 + L1MC4 LINE L1 6617 6706 -1336 957 223 155 38 chr6 3872463 3872831 -178542411 + MLT1F1 LTR MaLR 1 436 -131 2390 185 32 13 chr6 3872858 3873383 -178541859 - L1MB7 LINE L1 -16 6168 5634 3150 189 18 46 chr6 3873493 3874549 -178540693 - L1ME LINE L1 -463 6510 5500 2429 235 62 38 chr6 3874549 3874838 -178540404 - L1ME LINE L1 -4683 2276 1995 234 0 0 0 chr6 3874838 3874864 -178540378 + (ATATG)n Simple_repeat Simple_repeat 2 27 0 2429 235 62 38 chr6 3874864 3875460 -178539782 - L1ME LINE L1 -4964 1995 1365 2126 133 0 32 chr6 3875460 3875775 -178539467 - AluSx SINE Alu -7 305 1 2429 235 62 38 chr6 3875775 3875954 -178539288 - L1ME LINE L1 -5594 1365 1192 1147 204 0 62 chr6 3876190 3876465 -178538777 - L1ME LINE L1 -5643 1216 959 243 337 71 18 chr6 3877091 3877260 -178537982 - L1ME LINE L1 -6659 200 23 252 256 31 70 chr6 3877439 3877568 -178537674 + L1MC4a LINE L1 6055 6178 -1630 2148 106 0 32 chr6 3877576 3877887 -178537355 + AluSc SINE Alu 1 301 -8 433 209 22 67 chr6 3878079 3878213 -178537029 - L1MA7 LINE L1 -234 6057 5930 1449 196 7 29 chr6 3878319 3878600 -178536642 - AluJo SINE Alu -7 305 31 384 234 227 0 chr6 3879129 3879257 -178535985 + MER5A DNA MER1_type 27 183 -6 180 344 16 0 chr6 3879254 3879318 -178535924 + L3b LINE CR1 1519 1583 0 * 304 271 125 0 chr6 3879804 3879900 -178535342 + MIR SINE MIR 36 143 -65 381 309 31 50 chr6 3880110 3880369 -178534873 - L1MC4a LINE L1 -1818 5990 5737 230 237 92 13 chr6 3880424 3880457 -178534785 - MIR SINE MIR -21 241 212 2196 105 17 7 chr6 3880457 3880752 -178534490 - AluSx SINE Alu -14 298 1 230 237 92 13 chr6 3880752 3880794 -178534448 - MIR SINE MIR -50 212 160 492 271 19 15 chr6 3880938 3881227 -178534015 + MLT1A2 LTR MaLR 33 320 -70 * 748 140 7 22 chr6 3881210 3881346 -178533896 + MLT1A1 LTR MaLR 232 365 0 841 208 71 30 chr6 3881635 3881971 -178533271 - MSTD LTR MaLR -7 389 1 2162 128 3 0 chr6 3882352 3882658 -178532584 - AluSx SINE Alu -1 311 5 917 217 87 93 chr6 3882973 3883172 -178532070 - MER2 DNA MER2_type -1 343 145 1552 191 4 0 chr6 3883172 3883449 -178531793 + AluJo SINE Alu 33 310 -2 917 217 87 93 chr6 3883449 3883594 -178531648 - MER2 DNA MER2_type -199 145 1 219 240 0 0 chr6 3884010 3884060 -178531182 + (CA)n Simple_repeat Simple_repeat 1 50 0 195 242 121 22 chr6 3884352 3884443 -178530799 - MIR3 SINE MIR -8 200 101 257 86 0 0 chr6 3884862 3884897 -178530345 + Alu SINE Alu 9 43 -265 379 291 153 0 chr6 3885972 3886131 -178529111 - MIR SINE MIR -47 215 41 5257 140 53 26 chr6 3886303 3887814 -178527428 + pTR5 LTR ERV1 743 2432 -6 1638 190 0 7 chr6 3887909 3888198 -178527044 + AluSx SINE Alu 1 287 -25 2183 113 3 0 chr6 3888851 3889143 -178526099 - AluSx SINE Alu -19 293 1 1728 113 92 18 chr6 3889143 3889425 -178525817 - AluJo SINE Alu -5 307 5 400 126 137 32 chr6 3889902 3889997 -178525245 + FLAM_A SINE Alu 38 142 0 21 0 0 0 chr6 3890154 3890175 -178525067 + AT_rich Low_complexity Low_complexity 1 21 0 634 269 48 0 chr6 3890296 3890463 -178524779 + MER5B DNA MER1_type 2 176 -2 435 221 188 0 chr6 3891395 3891544 -178523698 + MER53 DNA DNA 6 182 -7 2106 99 0 11 chr6 3895875 3896159 -178519083 - AluSx SINE Alu -24 288 8 317 369 87 34 chr6 3896532 3896738 -178518504 - MIR SINE MIR -30 232 16 1027 228 197 46 chr6 3898272 3899075 -178516167 + L2 LINE L2 2346 3310 -3 276 286 0 0 chr6 3899383 3899481 -178515761 - LTR50 LTR ERVL -123 672 575 482 282 8 8 chr6 3901052 3901169 -178514073 - L2 LINE L2 -4 3309 3193 2336 115 0 6 chr6 3901301 3901615 -178513627 + AluSx SINE Alu 1 312 0 271 160 40 0 chr6 3901787 3901837 -178513405 + MLT1C LTR MaLR 1 52 -415 782 238 24 29 chr6 3901862 3902072 -178513170 - MER20 DNA MER1_type -4 215 7 2696 37 0 0 chr6 3902102 3902402 -178512840 + AluY SINE Alu 1 300 -11 2700 143 27 6 chr6 3902402 3902876 -178512366 + MER34C LTR ERV1 102 585 0 245 311 61 40 chr6 3902889 3903037 -178512205 + MARNA DNA Mariner 62 212 -374 2099 135 0 3 chr6 3903199 3903502 -178511740 + AluSx SINE Alu 2 303 -9 264 59 0 0 chr6 3905364 3905398 -178509844 + (TG)n Simple_repeat Simple_repeat 2 35 0 2272 112 3 0 chr6 3906981 3907277 -178507965 + AluSq SINE Alu 1 297 -16 519 298 22 31 chr6 3907638 3907863 -178507379 - MER58A DNA MER1_type 0 224 2 723 239 48 21 chr6 3908926 3909114 -178506128 - MIR SINE MIR -13 249 57 2126 114 3 26 chr6 3909312 3909448 -178505794 + AluSg SINE Alu 1 139 -171 2236 100 3 7 chr6 3909448 3909737 -178505505 + AluSx SINE Alu 4 291 -21 2126 114 3 26 chr6 3909737 3909908 -178505334 + AluSg SINE Alu 139 301 -9 3779 141 8 2 chr6 3910468 3911071 -178504171 - L1MB3 LINE L1 -2 6181 5575 805 258 40 59 chr6 3911585 3911907 -178503335 - MER102b DNA MER1_type -25 316 1 261 215 0 0 chr6 3912159 3912224 -178503018 + MER69 DNA AcHobo 260 324 -2202 667 294 77 45 chr6 3912276 3912805 -178502437 + MER115 DNA AcHobo 97 693 0 1651 248 138 11 chr6 3912830 3913350 -178501892 - MLT1G LTR MaLR 0 590 5 303 211 0 0 chr6 3913354 3913411 -178501831 + MER69 DNA AcHobo 341 397 -829 1020 184 89 53 chr6 3913412 3913716 -178501526 + MER69 DNA AcHobo 1955 2269 -257 256 309 12 0 chr6 3914039 3914123 -178501119 - L2 LINE L2 -317 2955 2871 1947 123 7 16 chr6 3914939 3915247 -178499995 - AluSx SINE Alu -6 306 2 386 304 53 23 chr6 3915330 3915501 -178499741 + MIR3 SINE MIR 3 172 -36 21 0 0 0 chr6 3915955 3915976 -178499266 + AT_rich Low_complexity Low_complexity 1 21 0 21 36 0 0 chr6 3916402 3916430 -178498812 + AT_rich Low_complexity Low_complexity 1 28 0 252 143 0 0 chr6 3916448 3916490 -178498752 + (A)n Simple_repeat Simple_repeat 1 42 0 407 283 139 55 chr6 3916624 3917030 -178498212 + L1ME4a LINE L1 5564 5991 -171 24 0 0 0 chr6 3917086 3917110 -178498132 + AT_rich Low_complexity Low_complexity 1 24 0 321 251 42 19 chr6 3917537 3917675 -178497567 + L1MC/D LINE L1 5694 5835 -286 225 200 0 0 chr6 3917787 3917832 -178497410 + T-rich Low_complexity Low_complexity 1 45 0 333 191 143 19 chr6 3917874 3917979 -178497263 - L1ME1 LINE L1 -5 6161 6044 377 192 90 0 chr6 3917980 3918058 -178497184 - LTR23 LTR ERV1 0 437 353 2232 80 0 7 chr6 3918133 3918458 -178496784 + AluY SINE Alu 1 323 0 701 88 78 0 chr6 3918459 3918561 -178496681 - AluSg SINE Alu -199 111 2 543 257 48 16 chr6 3918783 3918970 -178496272 - L1ME1 LINE L1 -18 6148 5956 2395 179 22 2 chr6 3918976 3919389 -178495853 + MSTB1 LTR MaLR 2 422 -10 621 174 14 14 chr6 3919402 3919540 -178495702 - L1ME1 LINE L1 -215 5951 5814 2001 130 7 0 chr6 3919565 3919864 -178495378 - AluY SINE Alu -10 301 1 921 113 8 0 chr6 3919865 3919998 -178495244 - AluSq/x SINE Alu -179 134 1 391 191 112 0 chr6 3919998 3920087 -178495155 - L1ME1 LINE L1 -341 5825 5727 870 191 0 23 chr6 3920087 3920260 -178494982 - FRAM SINE Alu -6 170 2 767 203 80 0 chr6 3920268 3920431 -178494811 - L1ME1 LINE L1 -502 5664 5489 1546 199 28 72 chr6 3920431 3920819 -178494423 + MSTD LTR MaLR 1 371 -25 1062 229 87 81 chr6 3920932 3921390 -178493852 + MLT1H LTR MaLR 77 537 -12 288 183 97 43 chr6 3921767 3921860 -178493382 - MER5A DNA MER1_type -83 106 9 562 278 29 0 chr6 3921896 3922069 -178493173 - MER5B DNA MER1_type 0 178 1 1813 110 4 0 chr6 3922767 3923021 -178492221 + AluSg SINE Alu 1 255 -55 2919 145 22 0 chr6 3923121 3923611 -178491631 + L1MA6 LINE L1 5799 6299 -1 580 131 0 0 chr6 3925749 3925833 -178489409 - AluS SINE Alu -224 89 6 2192 104 0 0 chr6 3926336 3926635 -178488607 - AluSc SINE Alu -8 301 3 3069 158 19 14 chr6 3927044 3927062 -178488180 - LTR45 LTR ERV1 -2 523 507 2502 101 59 0 chr6 3927062 3927418 -178487824 - MER51B LTR ERV1 0 377 1 3069 158 19 14 chr6 3927418 3927919 -178487323 - LTR45 LTR ERV1 -18 507 1 266 232 182 0 chr6 3929402 3929501 -178485741 + MER103 DNA DNA 2 118 -48 10843 128 30 8 chr6 3929933 3931960 -178483282 + Tigger1 DNA MER2_type 1 2418 0 189 341 34 0 chr6 3931973 3932061 -178483181 + L2 LINE L2 2666 2756 -558 266 88 0 0 chr6 3932173 3932207 -178483035 + Alu SINE Alu 1 34 -266 2410 253 102 35 chr6 3982243 3983145 -178432097 - ERVL LTR ERVL -637 5127 4166 580 227 122 46 chr6 3983225 3983529 -178431713 - HAL1 LINE L1 -1069 1438 1112 375 254 24 73 chr6 3983553 3983718 -178431524 - L1MD2 LINE L1 -2 6357 6201 1739 235 87 5 chr6 3985050 3985561 -178429681 - L1MD2 LINE L1 -147 6212 5664 556 247 35 56 chr6 3985562 3985685 -178429557 - HAL1 LINE L1 -1427 1080 956 2172 115 7 3 chr6 3985685 3985990 -178429252 - AluSx SINE Alu -6 306 1 556 247 35 56 chr6 3985990 3986153 -178429089 - HAL1 LINE L1 -1551 956 800 571 139 0 46 chr6 3986198 3986306 -178428936 - MLT1J2 LTR MaLR -2 448 346 374 299 28 40 chr6 3986377 3986554 -178428688 + HAL1 LINE L1 2258 2432 -75 1863 149 41 24 chr6 3986767 3987136 -178428106 - THE1C LTR MaLR 0 375 1 309 284 45 0 chr6 3987395 3987483 -178427759 - L1MD2 LINE L1 -863 5283 5192 276 257 0 53 chr6 3987483 3987599 -178427643 - MIR SINE MIR -97 111 17 3032 126 6 12 chr6 3987646 3988140 -178427102 + L1PA13 LINE L1 5666 6156 -7 478 269 58 32 chr6 3988154 3988310 -178426932 + MIR SINE MIR 24 183 -79 23 33 0 0 chr6 3988363 3988393 -178426849 + AT_rich Low_complexity Low_complexity 1 30 0 577 274 18 39 chr6 3988777 3989058 -178426184 + MARNA DNA Mariner 191 465 -121 2375 124 5 22 chr6 3989357 3989727 -178425515 + THE1B LTR MaLR 1 364 0 708 181 9 0 chr6 3990989 3991105 -178424137 + FLAM_C SINE Alu 1 117 -16 216 0 0 0 chr6 3991111 3991135 -178424107 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 2420 84 0 0 chr6 3991717 3992044 -178423198 + AluSc SINE Alu 1 309 0 962 174 0 0 chr6 3992123 3992284 -178422958 - FRAM SINE Alu -4 172 12 295 281 0 0 chr6 3995071 3995135 -178420107 - L2 LINE L2 -5 3267 3204 2282 92 0 10 chr6 3995598 3995904 -178419338 + AluSg SINE Alu 1 303 -7 760 172 85 68 chr6 3995905 3996128 -178419114 - MLT1C LTR MaLR 0 467 178 2332 83 3 0 chr6 3996128 3996428 -178418814 - AluSc SINE Alu -6 303 3 760 172 85 68 chr6 3996428 3996488 -178418754 - MLT1C LTR MaLR -289 178 120 804 214 144 28 chr6 3996488 3996773 -178418469 - LTR36 LTR ERV1 -1 610 293 326 185 0 0 chr6 3996940 3997003 -178418239 - MLT1C LTR MaLR -263 127 65 3093 116 22 41 chr6 3997003 3997588 -178417654 + MER4B LTR ERV1 1 574 -36 412 95 0 81 chr6 3997619 3997693 -178417549 - MLT1C LTR MaLR -399 68 1 1630 241 47 9 chr6 3997730 3998154 -178417088 + MER21B LTR ERV1 12 451 -412 883 121 0 0 chr6 3998163 3998287 -178416955 - FRAM SINE Alu -1 175 52 3595 138 98 8 chr6 3998287 3998938 -178416304 - MER50 LTR ERV1 -24 710 1 329 210 0 0 chr6 3998938 3998996 -178416246 - AluJ/FLAM SINE Alu -244 58 1 850 254 50 53 chr6 3999004 3999342 -178415900 + MER21B LTR ERV1 466 802 -61 2337 104 0 0 chr6 3999759 4000057 -178415185 + AluSq SINE Alu 1 298 -15 240 309 0 0 chr6 4000115 4000196 -178415046 + L1ME LINE L1 4263 4343 -1803 648 260 61 25 chr6 4000609 4000638 -178414604 + MIR SINE MIR 52 79 -183 1775 161 27 3 chr6 4000638 4000930 -178414312 + AluJb SINE Alu 4 302 -10 648 260 61 25 chr6 4000930 4001096 -178414146 + MIR SINE MIR 79 254 -8 2084 133 3 0 chr6 4001240 4001540 -178413702 + AluSx SINE Alu 1 301 -11 297 293 81 17 chr6 4001622 4001796 -178413446 + L1ME LINE L1 5477 5661 -460 244 333 29 29 chr6 4003519 4003624 -178411618 - L2 LINE L2 -8 3305 3201 716 85 171 0 chr6 4003624 4003753 -178411489 + LTR24C LTR ERV1 1 151 -484 263 309 31 10 chr6 4003839 4003936 -178411306 - L2 LINE L2 -480 2834 2736 335 67 0 50 chr6 4004383 4004443 -178410799 + (A)n Simple_repeat Simple_repeat 1 57 0 1019 119 0 0 chr6 4004494 4004628 -178410614 + AluSq/x SINE Alu 2 135 -177 1849 162 3 7 chr6 4004628 4004924 -178410318 + AluSx SINE Alu 1 295 -17 1690 144 39 35 chr6 4006672 4006957 -178408285 + AluJo SINE Alu 1 286 -26 570 230 118 6 chr6 4007309 4007470 -178407772 + MIR SINE MIR 57 235 -27 1880 59 0 0 chr6 4007553 4007774 -178407468 - AluY SINE Alu -17 294 74 1871 153 3 10 chr6 4008665 4008965 -178406277 + AluJb SINE Alu 1 298 -14 339 313 108 5 chr6 4009324 4009519 -178405723 + LTR16A LTR ERVL 158 372 -78 525 298 180 13 chr6 4009851 4010167 -178405075 - MLT1I LTR MaLR 0 409 41 1921 139 38 46 chr6 4010296 4010642 -178404600 + MER2 DNA MER2_type 1 343 -1 234 267 174 0 chr6 4010749 4010835 -178404407 - L2 LINE L2 -4 3309 3209 1039 115 4 106 chr6 4010954 4011189 -178404053 + L1MB7 LINE L1 5907 6117 -67 2396 66 0 7 chr6 4011221 4011524 -178403718 - AluY SINE Alu -10 301 1 351 44 0 0 chr6 4011527 4011572 -178403670 + (T)n Simple_repeat Simple_repeat 1 45 0 619 263 108 44 chr6 4011744 4013000 -178402242 + L1M4 LINE L1 3790 5167 -979 2238 104 3 10 chr6 4013001 4013310 -178401932 + AluSg SINE Alu 1 307 -3 2089 95 0 0 chr6 4013337 4013601 -178401641 + AluSq SINE Alu 1 264 -49 468 273 43 91 chr6 4013853 4014084 -178401158 - MIR SINE MIR -42 220 1 201 209 0 47 chr6 4014392 4014435 -178400807 + L2 LINE L2 3215 3255 -17 22 56 0 0 chr6 4014558 4014594 -178400648 + AT_rich Low_complexity Low_complexity 1 36 0 478 295 61 120 chr6 4015340 4015480 -178399762 - L2 LINE L2 -1 3312 3165 2212 100 13 0 chr6 4015480 4015779 -178399463 + AluSp SINE Alu 1 303 -10 478 295 61 120 chr6 4015779 4016198 -178399044 - L2 LINE L2 -148 3165 2768 1042 134 6 39 chr6 4016344 4016523 -178398719 - FRAM SINE Alu -1 175 3 739 209 60 0 chr6 4017045 4017260 -178397982 + Charlie1 DNA MER1_type 2534 2761 0 410 289 170 7 chr6 4017663 4017798 -178397444 + MER5A DNA MER1_type 33 189 0 431 355 38 12 chr6 4018096 4018440 -178396802 + L1MEc LINE L1 32 384 -6012 5550 173 22 18 chr6 4018545 4019455 -178395787 + L1 LINE L1 4081 4997 -1149 2033 125 31 7 chr6 4019455 4019744 -178395498 + AluSx SINE Alu 1 296 -16 5550 173 22 18 chr6 4019744 4020030 -178395212 + L1 LINE L1 4997 5281 -865 1038 169 0 28 chr6 4020039 4020216 -178395026 + AluJo SINE Alu 16 187 -125 1139 148 0 44 chr6 4020218 4020421 -178394821 + AluJo SINE Alu 119 312 0 1062 251 117 39 chr6 4020422 4021001 -178394241 + L1MEc LINE L1 1737 2347 -3868 2115 107 0 0 chr6 4021001 4021316 -178393926 + AluSg SINE Alu 1 315 0 1062 251 117 39 chr6 4021316 4021581 -178393661 + L1MEc LINE L1 2347 2590 -3625 1007 289 150 28 chr6 4021644 4022039 -178393203 + L2 LINE L2 2339 2809 -505 754 189 8 0 chr6 4022039 4022171 -178393071 - FLAM_C SINE Alu 0 133 1 1007 289 150 28 chr6 4022171 4022276 -178392966 + L2 LINE L2 2809 2900 -414 2244 85 0 0 chr6 4022333 4022645 -178392597 + AluSg SINE Alu 1 312 0 24 0 0 0 chr6 4022710 4022734 -178392508 + AT_rich Low_complexity Low_complexity 1 24 0 326 327 152 14 chr6 4022965 4023176 -178392066 - MIR SINE MIR -21 241 2 303 257 88 22 chr6 4023355 4023491 -178391751 + L1ME4a LINE L1 5944 6088 -33 349 301 114 10 chr6 4025253 4025433 -178389809 + MIR SINE MIR 13 206 -2 1890 84 73 14 chr6 4025499 4025785 -178389457 - AluSq SINE Alu -10 303 1 2312 65 17 3 chr6 4025985 4026278 -178388964 - AluSx SINE Alu -14 298 2 198 0 0 0 chr6 4027833 4027855 -178387387 + (T)n Simple_repeat Simple_repeat 1 22 0 207 88 0 0 chr6 4028132 4028166 -178387076 + (T)n Simple_repeat Simple_repeat 1 34 0 880 192 62 6 chr6 4028988 4029165 -178386077 - MIR SINE MIR -74 188 2 1111 183 48 60 chr6 4029386 4029551 -178385691 - AluJb SINE Alu -3 309 147 2168 113 0 0 chr6 4029551 4029843 -178385399 - AluSc SINE Alu -17 292 1 1111 183 48 60 chr6 4029843 4029928 -178385314 - AluJb SINE Alu -165 147 62 540 187 0 0 chr6 4029931 4030022 -178385220 + FLAM_A SINE Alu 31 121 -21 2145 110 14 3 chr6 4030291 4030582 -178384660 - AluSx SINE Alu -18 294 1 274 295 95 0 chr6 4031531 4031626 -178383616 - L2 LINE L2 -2 3311 3208 2366 90 0 7 chr6 4031682 4031982 -178383260 - AluSp SINE Alu -15 298 1 2155 114 3 3 chr6 4031982 4032281 -178382961 - AluSx SINE Alu -13 299 1 995 266 173 10 chr6 4032309 4032824 -178382418 - L2 LINE L2 -11 3302 2709 722 178 144 29 chr6 4032951 4033159 -178382083 - MIR SINE MIR -11 251 20 834 238 102 0 chr6 4033304 4033510 -178381732 - MIR SINE MIR -33 229 3 1612 179 9 57 chr6 4033866 4034184 -178381058 - AluJo SINE Alu -9 303 1 224 327 0 0 chr6 4034311 4034366 -178380876 + L2 LINE L2 353 407 -2907 1064 131 6 18 chr6 4034693 4034861 -178380381 - FRAM SINE Alu 0 166 1 1735 170 13 42 chr6 4035018 4035329 -178379913 - AluJb SINE Alu -8 304 3 2284 115 0 6 chr6 4035608 4035921 -178379321 - AluSx SINE Alu -1 311 1 286 211 53 0 chr6 4036425 4036501 -178378741 + MER116 DNA Mariner 1 80 0 204 40 0 0 chr6 4036668 4036693 -178378549 + (TTTTG)n Simple_repeat Simple_repeat 2 26 0 203 259 9 60 chr6 4037325 4037441 -178377801 + A-rich Low_complexity Low_complexity 5 114 0 483 276 115 36 chr6 4039919 4040223 -178375019 - L1MC4a LINE L1 -1971 5837 5510 2230 77 4 0 chr6 4040361 4040680 -178374562 - AluSg SINE Alu 0 329 10 180 111 0 0 chr6 4040750 4040777 -178374465 + (TA)n Simple_repeat Simple_repeat 2 28 0 2059 79 0 95 chr6 4040786 4041125 -178374117 - AluSx SINE Alu 0 309 1 1962 119 14 4 chr6 4041372 4041650 -178373592 + AluSp SINE Alu 9 289 -24 1774 184 0 0 chr6 4041918 4042200 -178373042 - AluJb SINE Alu -30 282 1 665 240 60 0 chr6 4042204 4042354 -178372888 - AluJb SINE Alu -17 295 137 1850 141 24 10 chr6 4042388 4042686 -178372556 + AluJb SINE Alu 3 304 -8 261 0 0 0 chr6 4043961 4043990 -178371252 + (TTTTA)n Simple_repeat Simple_repeat 2 30 0 1392 125 35 39 chr6 4043995 4044227 -178371015 - AluSx SINE Alu -37 275 45 351 247 118 12 chr6 4044480 4044650 -178370592 - HAL1 LINE L1 -1088 1419 1232 513 289 179 37 chr6 4044664 4045340 -178369902 - HAL1 LINE L1 -1477 1030 259 228 86 0 0 chr6 4045501 4045536 -178369706 + (TCCCC)n Simple_repeat Simple_repeat 3 37 0 1650 144 87 11 chr6 4045581 4045858 -178369384 - AluJb SINE Alu -14 298 1 358 224 187 0 chr6 4045937 4046071 -178369171 - L1ME2 LINE L1 -16 6148 5990 558 155 68 0 chr6 4046302 4046405 -178368837 - L1MC1 LINE L1 -5 6328 6219 1091 145 59 5 chr6 4047066 4047252 -178367990 + AluJb SINE Alu 108 303 -9 444 182 261 51 chr6 4047311 4047487 -178367755 + MER20 DNA MER1_type 7 219 0 344 234 26 0 chr6 4047827 4047904 -178367338 - MIR SINE MIR -61 147 69 1130 192 88 22 chr6 4049033 4049350 -178365892 - MER46C DNA MER2_type 0 338 1 850 174 0 153 chr6 4050055 4050388 -178364854 - L1MC5 LINE L1 -861 7100 6820 666 249 95 86 chr6 4050388 4050524 -178364718 - MER58B DNA MER1_type -2079 341 208 2369 58 10 7 chr6 4050524 4050837 -178364405 - AluY SINE Alu 0 314 1 666 249 95 86 chr6 4050837 4051037 -178364205 - MER58B DNA MER1_type -2212 208 1 850 174 0 153 chr6 4051037 4051330 -178363912 - L1MC5 LINE L1 -1141 6820 6476 1007 247 71 30 chr6 4051698 4052164 -178363078 - L1MC5 LINE L1 -2029 5779 5295 2162 114 3 0 chr6 4052339 4052636 -178362606 - AluSx SINE Alu -14 298 1 278 213 115 41 chr6 4052983 4053105 -178362137 + L1MC4 LINE L1 7906 8036 -6 405 0 0 0 chr6 4053580 4053625 -178361617 + (CA)n Simple_repeat Simple_repeat 2 46 0 2565 46 0 3 chr6 4053775 4054079 -178361163 + AluY SINE Alu 1 303 -8 1120 162 8 83 chr6 4054230 4054471 -178360771 - AluJo SINE Alu -5 307 85 2785 13 0 0 chr6 4055697 4056004 -178359238 - AluYa5 SINE Alu -4 307 1 2084 102 0 33 chr6 4056564 4056888 -178358354 - AluSx SINE Alu 0 312 1 2076 103 0 17 chr6 4056966 4057295 -178357947 - AluSq SINE Alu 0 313 1 454 174 22 22 chr6 4057931 4058050 -178357192 - AluSg/x SINE Alu 0 305 187 561 188 210 6 chr6 4059015 4059191 -178356051 - L1PA7 LINE L1 -1 6153 5942 1399 176 70 40 chr6 4059568 4059880 -178355362 - AluJo SINE Alu 0 320 1 2080 105 4 0 chr6 4060194 4060470 -178354772 - AluSc SINE Alu -20 289 13 23 33 0 0 chr6 4061929 4061959 -178353283 + AT_rich Low_complexity Low_complexity 1 30 0 1207 86 37 0 chr6 4063430 4063592 -178351650 - AluY SINE Alu -9 302 135 1115 165 36 45 chr6 4063689 4063913 -178351329 - AluJo SINE Alu -9 303 82 23 0 0 0 chr6 4064682 4064705 -178350537 + AT_rich Low_complexity Low_complexity 1 23 0 236 331 74 29 chr6 4064753 4064928 -178350314 + L2 LINE L2 2652 2834 -480 2066 122 3 23 chr6 4065319 4065623 -178349619 - AluSx SINE Alu -14 298 1 915 191 83 5 chr6 4065766 4065970 -178349272 - MER7A DNA MER2_type -117 229 12 21 0 0 0 chr6 4068187 4068208 -178347034 + AT_rich Low_complexity Low_complexity 1 21 0 848 168 48 12 chr6 4071292 4071459 -178343783 - AluSc SINE Alu -2 307 135 600 256 130 27 chr6 4072032 4072255 -178342987 - MIR SINE MIR -13 249 4 2213 96 31 0 chr6 4072900 4073191 -178342051 - AluSg1 SINE Alu -9 300 1 23 33 0 0 chr6 4073242 4073272 -178341970 + AT_rich Low_complexity Low_complexity 1 30 0 292 302 0 23 chr6 4073370 4073456 -178341786 + MER5A DNA MER1_type 8 91 -98 260 366 81 8 chr6 4073396 4073532 -178341710 - MER5A DNA MER1_type -22 167 11 * 22 0 0 0 chr6 4075600 4075622 -178339620 + AT_rich Low_complexity Low_complexity 1 22 0 25 31 0 0 chr6 4075781 4075813 -178339429 + AT_rich Low_complexity Low_complexity 1 32 0 1638 201 30 0 chr6 4076401 4076704 -178338538 + AluJb SINE Alu 1 312 0 422 291 133 0 chr6 4077101 4077266 -178337976 - MIR SINE MIR -74 188 2 298 261 0 15 chr6 4077650 4077715 -178337527 + MER5A DNA MER1_type 123 186 -3 2144 114 10 0 chr6 4077739 4078037 -178337205 + AluSq SINE Alu 1 301 -12 776 58 58 33 chr6 4078037 4078157 -178337085 + L1PA8 LINE L1 6050 6172 0 2282 98 3 0 chr6 4078159 4078454 -178336788 + AluSp SINE Alu 1 296 -17 705 235 27 27 chr6 4078480 4078663 -178336579 + MIR SINE MIR 53 235 -27 27 0 0 0 chr6 4079061 4079088 -178336154 + AT_rich Low_complexity Low_complexity 1 27 0 1960 133 3 20 chr6 4079530 4079830 -178335412 - AluSx SINE Alu -17 295 1 2141 108 0 40 chr6 4080728 4081051 -178334191 + AluSx SINE Alu 1 310 -2 428 292 81 49 chr6 4081434 4081619 -178333623 + L3b LINE CR1 1303 1493 -90 232 81 0 27 chr6 4081635 4081672 -178333570 + MER5B DNA MER1_type 20 55 -123 2262 109 0 6 chr6 4081723 4082034 -178333208 + AluSx SINE Alu 1 309 -3 181 194 0 0 chr6 4082034 4082065 -178333177 + MER5A DNA MER1_type 111 141 -48 361 222 25 0 chr6 4082067 4082148 -178333094 + U13 snRNA snRNA 1 83 -21 2049 108 37 17 chr6 4082275 4082571 -178332671 + AluSx SINE Alu 1 302 -10 2589 63 0 0 chr6 4083728 4084030 -178331212 - AluSg SINE Alu -8 302 1 307 277 133 80 chr6 4084569 4084981 -178330261 - L1M2 LINE L1 -5826 1023 590 * 332 244 182 101 chr6 4084895 4085350 -178329892 + L1M2 LINE L1 776 1267 -5582 25 31 0 0 chr6 4085710 4085742 -178329500 + AT_rich Low_complexity Low_complexity 1 32 0 643 218 91 63 chr6 4085911 4086163 -178329079 + L2 LINE L2 3032 3290 -23 187 152 0 182 chr6 4086760 4086826 -178328416 + L2 LINE L2 3215 3268 -4 362 263 26 26 chr6 4086851 4086965 -178328277 - MIR SINE MIR -13 249 136 2140 104 3 35 chr6 4086972 4087290 -178327952 - AluSx SINE Alu -4 308 1 3725 103 68 6 chr6 4087985 4088531 -178326711 + MER39B LTR ERV1 1 580 -73 543 233 10 0 chr6 4088531 4088634 -178326608 - AluSc SINE Alu -93 216 113 2097 142 0 7 chr6 4089218 4089528 -178325714 - AluSx SINE Alu 0 312 5 207 108 27 0 chr6 4090990 4091027 -178324215 + (TA)n Simple_repeat Simple_repeat 2 39 0 247 182 45 15 chr6 4091486 4091506 -178323736 + GA-rich Low_complexity Low_complexity 2 20 -49 1701 156 48 17 chr6 4091506 4091795 -178323447 + AluJo SINE Alu 1 298 -14 247 182 45 15 chr6 4091795 4091840 -178323402 + GA-rich Low_complexity Low_complexity 20 69 0 2365 98 3 0 chr6 4091843 4092150 -178323092 + AluSp SINE Alu 1 308 -5 1213 175 16 70 chr6 4093524 4093838 -178321404 - AluJo SINE Alu -15 297 1 2414 67 3 3 chr6 4093996 4094296 -178320946 - AluY SINE Alu -11 300 1 2090 112 34 3 chr6 4094753 4095047 -178320195 + AluSx SINE Alu 1 303 -9 1114 138 56 81 chr6 4095144 4095189 -178320053 - MLT1A1 LTR MaLR 0 365 320 2315 97 10 0 chr6 4095189 4095489 -178319753 + AluSq SINE Alu 1 303 -10 1114 138 56 81 chr6 4095489 4095686 -178319556 - MLT1A1 LTR MaLR -45 320 173 6019 117 208 86 chr6 4095687 4097156 -178318086 + pTR5 LTR ERV1 791 2438 0 592 183 32 40 chr6 4097195 4097321 -178317921 - MLT1A1 LTR MaLR -240 125 1 277 85 85 43 chr6 4097438 4097485 -178317757 + Tigger2 DNA MER2_type 1 49 -2669 258 250 24 97 chr6 4097490 4097614 -178317628 + LTR4 LTR ERV1 5 119 -477 764 232 28 46 chr6 4097851 4098135 -178317107 + LTR4 LTR ERV1 318 596 0 4123 131 29 50 chr6 4098135 4098256 -178316986 + Tigger2 DNA MER2_type 47 169 -2549 1929 126 7 0 chr6 4098256 4098526 -178316716 + AluSx SINE Alu 5 276 -36 4123 131 29 50 chr6 4098526 4098729 -178316513 + Tigger2 DNA MER2_type 169 375 -2343 2128 124 3 0 chr6 4098729 4099027 -178316215 + AluSq SINE Alu 1 299 -14 4123 131 29 50 chr6 4099027 4099424 -178315818 + Tigger2 DNA MER2_type 375 754 -1964 936 142 77 27 chr6 4099476 4099501 -178315741 + Tigger2 DNA MER2_type 2451 2473 -235 2067 131 7 0 chr6 4099501 4099799 -178315443 - AluSx SINE Alu -12 300 1 936 142 77 27 chr6 4099799 4099956 -178315286 + Tigger2 DNA MER2_type 2473 2642 -66 639 119 30 50 chr6 4100004 4100083 -178315159 + FLAM_A SINE Alu 29 107 -204 2160 106 13 7 chr6 4100083 4100384 -178314858 - AluSc SINE Alu -6 303 1 639 119 30 50 chr6 4100384 4100405 -178314837 + FLAM_A SINE Alu 107 127 -184 360 221 15 0 chr6 4100406 4100474 -178314768 + Tigger2 DNA MER2_type 2640 2708 -10 2173 99 3 0 chr6 4100487 4100810 -178314432 - AluSx SINE Alu 0 324 1 1671 193 74 37 chr6 4101022 4101452 -178313790 + MLT1C LTR MaLR 18 463 -4 490 288 70 27 chr6 4101736 4102128 -178313114 + L1ME4a LINE L1 5600 6016 -105 26 0 0 0 chr6 4102982 4103008 -178312234 + AT_rich Low_complexity Low_complexity 1 26 0 1446 138 9 9 chr6 4103012 4103236 -178312006 + AluJo SINE Alu 36 259 -53 2374 51 27 0 chr6 4103856 4104148 -178311094 - AluY SINE Alu -11 300 1 2308 84 0 0 chr6 4104279 4104564 -178310678 - AluY SINE Alu -26 285 1 373 272 234 0 chr6 4105300 4105484 -178309758 - L2 LINE L2 -549 2765 2539 2233 112 3 13 chr6 4105588 4105902 -178309340 - AluSx SINE Alu -1 311 1 2004 156 130 16 chr6 4106362 4106746 -178308496 + MSTA LTR MaLR 1 428 0 204 302 0 38 chr6 4106938 4106991 -178308251 + L2 LINE L2 3163 3213 -59 471 252 25 0 chr6 4107095 4107214 -178308028 - MLT1H LTR MaLR -425 124 3 2499 143 16 9 chr6 4107463 4107888 -178307354 + L1MA3 LINE L1 5600 6027 -278 2607 127 8 3 chr6 4107890 4108276 -178306966 + L1MA5 LINE L1 5903 6290 -10 2394 97 0 0 chr6 4109249 4109560 -178305682 - AluSq SINE Alu -2 311 1 346 127 0 0 chr6 4109567 4109622 -178305620 - Alu SINE Alu -1 299 245 3763 211 101 51 chr6 4109958 4110330 -178304912 - L1M LINE L1 -773 5393 5041 2419 78 0 0 chr6 4110330 4110625 -178304617 + AluY SINE Alu 1 295 -16 3763 211 101 51 chr6 4110625 4110776 -178304466 - L1M LINE L1 -1125 5041 4899 2267 115 7 0 chr6 4110776 4111071 -178304171 - AluSx SINE Alu -15 297 1 3763 211 101 51 chr6 4111071 4111511 -178303731 - L1M LINE L1 -1267 4899 4482 3161 164 130 23 chr6 4111511 4112217 -178303025 - LTR48 LTR ERV1 -3 784 3 3763 211 101 51 chr6 4112217 4112371 -178302871 - L1M LINE L1 -1684 4482 4337 2994 161 39 17 chr6 4112371 4112911 -178302331 - L1MB1 LINE L1 -1 6167 5616 3763 211 101 51 chr6 4112911 4113283 -178301959 - L1M LINE L1 -1829 4337 3846 2779 127 83 22 chr6 4113293 4113798 -178301444 - L1MB4 LINE L1 -3 6177 5642 310 137 78 0 chr6 4113800 4113851 -178301391 + MSTD LTR MaLR 1 55 -373 1505 184 92 30 chr6 4115697 4116033 -178299209 + MSTD LTR MaLR 40 396 0 257 87 0 87 chr6 4116033 4116079 -178299163 - L1MB4 LINE L1 -539 5644 5603 * 5567 219 97 19 chr6 4116067 4118657 -178296585 - L1M4 LINE L1 -1462 4920 924 2001 142 3 7 chr6 4118657 4118960 -178296282 - AluSx SINE Alu -10 302 1 5567 219 97 19 chr6 4118960 4119143 -178296099 - L1M4 LINE L1 -5458 924 757 349 303 67 26 chr6 4119774 4120014 -178295228 - L1MDb LINE L1 -5484 586 323 294 104 42 0 chr6 4120145 4120193 -178295049 + MADE1 DNA Mariner 1 50 -30 345 331 33 11 chr6 4120240 4120424 -178294818 - L1MDb LINE L1 -5882 188 1 306 311 34 17 chr6 4120424 4120543 -178294699 + MIR SINE MIR 47 167 -95 2234 103 10 0 chr6 4121749 4122041 -178293201 + AluSx SINE Alu 1 295 -17 2145 114 0 10 chr6 4122123 4122422 -178292820 - AluSx SINE Alu -16 296 1 316 250 16 12 chr6 4122462 4122588 -178292654 - MER5A DNA MER1_type 0 189 10 2191 116 0 3 chr6 4123716 4124010 -178291232 - AluSx SINE Alu -19 293 1 2114 123 0 7 chr6 4124998 4125299 -178289943 - AluSx SINE Alu -13 299 1 25 0 0 0 chr6 4125347 4125372 -178289870 + AT_rich Low_complexity Low_complexity 1 25 0 2413 216 46 110 chr6 4125411 4125848 -178289394 - L1ME2 LINE L1 -49 6115 5651 393 100 0 57 chr6 4125848 4125873 -178289369 + L1MA9 LINE L1 6247 6272 -40 1928 186 20 12 chr6 4125873 4126123 -178289119 - MER7A DNA MER2_type -2693 345 92 2107 108 38 0 chr6 4126123 4126410 -178288832 + AluSx SINE Alu 1 298 -14 1928 186 20 12 chr6 4126410 4126503 -178288739 - MER7A DNA MER2_type -2946 92 1 393 100 0 57 chr6 4126503 4126547 -178288695 + L1MA9 LINE L1 6272 6312 0 2413 216 46 110 chr6 4126547 4127106 -178288136 - L1ME2 LINE L1 -513 5651 5176 374 219 44 11 chr6 4127773 4127888 -178287354 + MIR SINE MIR 19 146 -63 2340 105 0 0 chr6 4127895 4128199 -178287043 - AluSx SINE Alu -8 304 1 233 150 0 0 chr6 4128239 4128279 -178286963 - Alu SINE Alu -8 125 86 1444 119 0 0 chr6 4128281 4128474 -178286768 - AluSq SINE Alu -120 193 1 1950 112 0 18 chr6 4128838 4129114 -178286128 - AluSx SINE Alu 0 312 42 183 125 83 0 chr6 4129216 4129288 -178285954 + (TA)n Simple_repeat Simple_repeat 2 79 0 1930 123 27 17 chr6 4129363 4129655 -178285587 + AluSx SINE Alu 1 295 -17 432 239 22 46 chr6 4130189 4130408 -178284834 + L1ME4a LINE L1 5709 6121 0 334 223 87 19 chr6 4130448 4130551 -178284691 + MIR3 SINE MIR 85 194 -14 659 310 64 74 chr6 4131943 4132481 -178282761 - L2 LINE L2 -2 3270 2733 1738 251 41 21 chr6 4132492 4133007 -178282235 - L1ME2 LINE L1 -8 6156 5632 2006 116 0 0 chr6 4133083 4133350 -178281892 - AluSg SINE Alu -2 308 42 182 292 31 131 chr6 4133677 4133807 -178281435 - L2 LINE L2 -1 3271 3155 1981 164 33 9 chr6 4134247 4134583 -178280659 - MER2 DNA MER2_type 0 344 1 249 108 0 0 chr6 4134768 4134805 -178280437 + (TCCC)n Simple_repeat Simple_repeat 1 37 0 1982 132 17 3 chr6 4134805 4135092 -178280150 - AluSx SINE Alu -21 291 1 266 322 203 0 chr6 4135096 4135273 -178279969 + MIR SINE MIR 50 262 0 25 0 0 0 chr6 4137190 4137215 -178278027 + AT_rich Low_complexity Low_complexity 1 25 0 2236 135 0 0 chr6 4137253 4137565 -178277677 + AluSx SINE Alu 1 312 0 1039 258 31 28 chr6 4137731 4138053 -178277189 - MER77 LTR ERV1 -6 599 277 528 248 106 47 chr6 4138313 4138443 -178276799 - L1MC5 LINE L1 -31 7930 7809 2178 117 7 0 chr6 4138443 4138742 -178276500 - AluSx SINE Alu -11 301 1 528 248 106 47 chr6 4138742 4139015 -178276227 - L1MC5 LINE L1 -152 7809 7503 441 263 80 144 chr6 4141151 4141900 -178273342 - L1M2 LINE L1 -5489 1360 660 228 67 0 0 chr6 4142182 4142212 -178273030 + (CAAAA)n Simple_repeat Simple_repeat 2 31 0 222 237 0 66 chr6 4142410 4142486 -178272756 - MIR SINE MIR -129 133 63 2082 113 14 3 chr6 4142596 4142889 -178272353 - AluSq SINE Alu -17 296 1 857 174 73 18 chr6 4143200 4143418 -178271824 - LTR37B LTR ERV1 -42 426 197 325 297 44 100 chr6 4144273 4144791 -178270451 + L2 LINE L2 2390 2878 -436 26 0 0 0 chr6 4145811 4145837 -178269405 + AT_rich Low_complexity Low_complexity 1 26 0 2613 201 64 47 chr6 4146237 4146312 -178268930 - MER82 DNA MER2_type -1 652 580 1801 123 0 87 chr6 4146312 4146652 -178268590 - AluSx SINE Alu 0 313 1 2613 201 64 47 chr6 4146652 4147216 -178268026 - MER82 DNA MER2_type -73 580 1 954 273 67 4 chr6 4147226 4147479 -178267763 - LTR16C LTR ERVL 0 491 223 2139 121 3 7 chr6 4147491 4147797 -178267445 - AluY SINE Alu -6 305 1 536 213 89 30 chr6 4147798 4147967 -178267275 - L1ME LINE L1 -3292 2788 2610 3072 229 71 70 chr6 4147982 4148566 -178266676 - L1ME LINE L1 -3549 2531 1949 207 0 0 0 chr6 4148566 4148589 -178266653 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 3072 229 71 70 chr6 4148589 4148606 -178266636 - L1ME LINE L1 -4131 1949 1934 2247 114 114 75 chr6 4148606 4148648 -178266594 - MSTA LTR MaLR 0 428 389 1566 154 24 8 chr6 4148648 4148901 -178266341 + AluJb SINE Alu 23 279 -33 221 0 0 33 chr6 4148901 4148931 -178266311 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 2247 114 114 75 chr6 4148931 4149299 -178265943 - MSTA LTR MaLR -38 390 1 3072 229 71 70 chr6 4149299 4150490 -178264752 - L1ME LINE L1 -4146 1934 742 2402 150 23 30 chr6 4151127 4151560 -178263682 - MSTB1 LTR MaLR 0 432 3 524 323 31 16 chr6 4152065 4152257 -178262985 - L2 LINE L2 -1 3312 3118 184 341 181 4 chr6 4152258 4152347 -178262895 - L2 LINE L2 -495 2819 2747 2496 205 58 5 chr6 4152347 4152795 -178262447 - MER70A LTR ERVL 0 472 1 184 341 181 4 chr6 4152795 4152931 -178262311 - L2 LINE L2 -567 2747 2554 234 281 114 24 chr6 4153116 4153326 -178261916 - L1M4 LINE L1 -2106 4040 3812 * 2525 166 53 0 chr6 4153311 4153487 -178261755 - L1MB3 LINE L1 -210 5973 5808 249 83 0 0 chr6 4153487 4153523 -178261719 + (TA)n Simple_repeat Simple_repeat 1 36 0 2525 166 53 0 chr6 4153523 4153797 -178261445 - L1MB3 LINE L1 -375 5808 5499 2189 116 0 0 chr6 4153803 4154104 -178261138 - AluY SINE Alu -9 302 2 3314 98 7 7 chr6 4154130 4154580 -178260662 - L1MA2 LINE L1 0 6304 5855 10792 175 52 14 chr6 4154580 4156768 -178258474 - L1MB3 LINE L1 -1282 4864 2593 1270 116 0 0 chr6 4156770 4156942 -178258300 - AluSq SINE Alu 0 313 142 233 171 0 0 chr6 4157074 4157115 -178258127 - HAL1 LINE L1 -109 2398 2358 3689 226 122 44 chr6 4157237 4158804 -178256438 - L1MDb LINE L1 -3979 2427 783 279 0 0 0 chr6 4159005 4159036 -178256206 + (TTTA)n Simple_repeat Simple_repeat 2 32 0 222 128 0 0 chr6 4159182 4159221 -178256021 + (GA)n Simple_repeat Simple_repeat 1 39 0 375 302 17 26 chr6 4160083 4160199 -178255043 - MIR3 SINE MIR -9 199 85 356 250 190 9 chr6 4160729 4160845 -178254397 - L2 LINE L2 -2 3270 3134 273 252 39 87 chr6 4161095 4161198 -178254044 - L3 LINE CR1 -12 1565 1468 221 302 94 0 chr6 4162263 4162359 -178252883 + L2 LINE L2 3161 3265 -7 1890 191 26 63 chr6 4162726 4163156 -178252086 - MLT2D LTR ERVL 0 414 1 243 290 250 0 chr6 4163922 4164022 -178251220 + L2 LINE L2 3148 3272 0 2392 65 0 3 chr6 4164127 4164418 -178250824 + AluY SINE Alu 3 292 -19 217 339 45 18 chr6 4164480 4164592 -178250650 + L2 LINE L2 2643 2757 -557 2060 132 134 11 chr6 4165714 4166094 -178249148 + MSTA LTR MaLR 1 427 -1 245 364 98 8 chr6 4166158 4166422 -178248820 - L2 LINE L2 -9 3263 2976 1792 154 57 0 chr6 4166939 4167218 -178248024 - AluSg SINE Alu -14 296 2 1066 214 81 45 chr6 4167815 4168147 -178247095 + MER2 DNA MER2_type 1 344 0 939 210 16 0 chr6 4171376 4171562 -178243680 + MER2 DNA MER2_type 2 190 -155 2097 132 3 0 chr6 4171565 4171868 -178243374 - AluSq SINE Alu -9 304 1 324 224 0 15 chr6 4171892 4171959 -178243283 + MER2 DNA MER2_type 267 332 -13 1247 178 18 4 chr6 4172118 4172449 -178242793 - MER74A LTR ERVL -124 434 19 2095 85 0 0 chr6 4172449 4172708 -178242534 + AluSc SINE Alu 1 259 -50 191 61 30 0 chr6 4172718 4172751 -178242491 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 259 86 0 0 chr6 4172756 4172791 -178242451 - MER74C LTR ERVL -424 36 2 2552 241 58 24 chr6 4172794 4173002 -178242240 - L1ME3A LINE L1 -21 6149 5950 2006 146 7 0 chr6 4173002 4173304 -178241938 - AluSx SINE Alu -8 304 1 2552 241 58 24 chr6 4173304 4174519 -178240723 - L1ME3A LINE L1 -220 5950 4667 1257 215 15 4 chr6 4175640 4175926 -178239316 + AluJb SINE Alu 16 304 0 228 208 26 26 chr6 4176108 4176185 -178239057 - MER117 DNA MER1_type -5 192 116 326 277 28 35 chr6 4176255 4176396 -178238846 + MIR SINE MIR 8 147 -115 2077 210 33 9 chr6 4176396 4176849 -178238393 + MER101 LTR ERV1 11 474 0 2352 98 0 0 chr6 4177011 4177308 -178237934 - AluSq SINE Alu -10 303 7 207 0 0 0 chr6 4178518 4178541 -178236701 + (T)n Simple_repeat Simple_repeat 1 23 0 379 169 0 28 chr6 4179204 4179275 -178235967 + MER89-int LTR ERV1 2577 2645 -3686 1745 182 41 64 chr6 4179358 4179945 -178235297 + MER89-int LTR ERV1 1066 3012 -3319 705 213 70 39 chr6 4179869 4180099 -178235143 + LTR57-int LTR ERVL 1236 1472 -3871 * 2304 89 3 0 chr6 4180099 4180392 -178234850 + AluSg SINE Alu 1 294 -16 2402 97 0 0 chr6 4180533 4180841 -178234401 + AluSx SINE Alu 1 308 -4 883 169 15 36 chr6 4180891 4181086 -178234156 + MER89-int LTR ERV1 3540 3730 -2868 723 142 172 64 chr6 4181165 4181369 -178233873 + MER89-int LTR ERV1 3730 3955 -2643 865 114 57 0 chr6 4181370 4181493 -178233749 + FRAM SINE Alu 32 161 -15 2265 108 0 37 chr6 4181495 4181820 -178233422 + AluSq SINE Alu 1 313 0 2307 175 38 69 chr6 4181864 4182469 -178232773 + MER89-int LTR ERV1 4024 4609 -1722 265 277 15 46 chr6 4182455 4182585 -178232657 + MER89-int LTR ERV1 2727 2852 -1795 * 270 247 67 67 chr6 4183985 4184074 -178231168 + MER89-int LTR ERV1 6305 6393 -408 2414 150 32 47 chr6 4184641 4185114 -178230128 + MER101 LTR ERV1 9 474 0 1700 197 61 72 chr6 4185484 4185734 -178229508 + MLT1C LTR MaLR 1 245 -222 891 128 0 0 chr6 4185734 4185898 -178229344 + (GA)n Simple_repeat Simple_repeat 2 165 0 1700 197 61 72 chr6 4185898 4186119 -178229123 + MLT1C LTR MaLR 245 467 0 933 187 12 88 chr6 4186324 4186575 -178228667 - MER101 LTR ERV1 -111 363 132 370 184 167 18 chr6 4186998 4187112 -178228130 - L1ME4a LINE L1 -27 6374 6244 1459 265 121 24 chr6 4187140 4187852 -178227390 - HAL1 LINE L1 0 2507 1727 1364 258 94 28 chr6 4187849 4188591 -178226651 - L1ME4a LINE L1 -452 5998 5205 * 423 246 42 122 chr6 4188679 4189065 -178226177 - L1ME4a LINE L1 -3463 2963 2609 1570 173 43 34 chr6 4189445 4189768 -178225474 + MLT1B LTR MaLR 1 326 -64 581 98 0 80 chr6 4189767 4189879 -178225363 + Tigger4(Zombi) DNA MER2_type 2629 2731 0 * 300 262 94 67 chr6 4190210 4190575 -178224667 - L1MDa LINE L1 -4813 1613 1232 264 285 102 0 chr6 4190569 4190706 -178224536 - L1MDa LINE L1 -5069 1347 1197 * 243 211 53 123 chr6 4190820 4190934 -178224308 - MLT1H LTR MaLR -13 536 431 5121 83 25 3 chr6 4191053 4191729 -178223513 - LTR8 LTR ERV1 0 691 1 313 258 78 31 chr6 4191753 4191881 -178223361 - MLT1H LTR MaLR -365 184 51 25 0 0 0 chr6 4191930 4191955 -178223287 + AT_rich Low_complexity Low_complexity 1 25 0 873 237 118 0 chr6 4192097 4192325 -178222917 - MLT1E1 LTR MaLR -2 652 398 547 265 33 17 chr6 4192653 4192834 -178222408 - MIR SINE MIR 0 262 79 884 166 61 55 chr6 4192836 4193017 -178222225 + LTR54 LTR ERV1 2 183 -327 813 230 19 5 chr6 4193040 4193249 -178221993 + LTR54 LTR ERV1 299 510 0 2109 100 19 59 chr6 4193947 4194267 -178220975 - AluSx SINE Alu -5 307 1 184 308 39 51 chr6 4194283 4194439 -178220803 + MIR SINE MIR 1 154 -108 27 81 0 0 chr6 4194479 4194541 -178220701 + AT_rich Low_complexity Low_complexity 1 62 0 4147 109 148 110 chr6 4196158 4197523 -178217719 - pTR5 LTR ERV1 0 2438 742 231 173 77 0 chr6 4199145 4199197 -178216045 - L1 LINE L1 -3715 2431 2376 8012 14 0 0 chr6 4199203 4200271 -178214971 - L1PA2 LINE L1 -4 6151 5084 1859 175 34 0 chr6 4200557 4200854 -178214388 + AluSx SINE Alu 1 307 -5 1467 143 3 73 chr6 4200854 4201140 -178214102 - MER2 DNA MER2_type -79 266 1 8389 109 41 6 chr6 4201514 4202770 -178212472 + HSMAR2 DNA Mariner 2 1301 -1 22 0 0 0 chr6 4202895 4202917 -178212325 + AT_rich Low_complexity Low_complexity 1 22 0 258 274 73 32 chr6 4202962 4203086 -178212156 - L1MC/D LINE L1 -2159 5883 5755 680 272 68 33 chr6 4203201 4203661 -178211581 - L1MC/D LINE L1 -448 5722 5255 598 120 16 72 chr6 4203744 4203798 -178211444 - L1MB2 LINE L1 -5 6166 6111 1913 84 4 4 chr6 4203798 4204073 -178211169 - L1MA2 LINE L1 0 6304 6030 598 120 16 72 chr6 4204073 4204143 -178211099 - L1MB2 LINE L1 -60 6111 6049 44844 38 4 1 chr6 4204191 4210312 -178204930 - L1PA4 LINE L1 0 6155 13 594 256 42 30 chr6 4210315 4210577 -178204665 - L1MC/D LINE L1 -999 5147 4883 663 299 119 3 chr6 4210650 4210944 -178204298 + LTR16C LTR ERVL 71 398 -93 1633 189 4 0 chr6 4211014 4211278 -178203964 - AluJo SINE Alu -47 265 1 614 164 8 0 chr6 4212766 4212888 -178202354 + CT-rich Low_complexity Low_complexity 4 126 0 1560 170 56 35 chr6 4212975 4213263 -178201979 - AluJo SINE Alu -18 294 1 198 265 20 0 chr6 4214253 4214302 -178200940 + L2 LINE L2 3247 3296 -17 1972 175 153 0 chr6 4214918 4215318 -178199924 + LOR1b LTR ERV1 1 461 0 22 0 0 0 chr6 4215340 4215362 -178199880 + AT_rich Low_complexity Low_complexity 1 22 0 42 36 0 0 chr6 4215485 4215541 -178199701 + AT_rich Low_complexity Low_complexity 1 56 0 197 308 38 60 chr6 4216030 4216163 -178199079 + L2 LINE L2 3141 3270 -2 1492 147 88 26 chr6 4217409 4217682 -178197560 + AluJo SINE Alu 1 290 -22 740 249 23 17 chr6 4217872 4218049 -178197193 - MER5B DNA MER1_type 0 178 1 345 100 0 0 chr6 4218097 4218147 -178197095 + (CA)n Simple_repeat Simple_repeat 1 50 0 2464 137 16 29 chr6 4218774 4219154 -178196088 - THE1C LTR MaLR 0 375 1 10878 107 31 45 chr6 4219156 4220757 -178194485 - THE1C-int LTR MaLR -2 1578 1 2453 120 29 27 chr6 4220757 4221131 -178194111 - THE1C LTR MaLR 0 375 1 1260 193 90 43 chr6 4221221 4221522 -178193720 + MSTB1 LTR MaLR 1 315 -117 25 0 0 0 chr6 4222014 4222039 -178193203 + AT_rich Low_complexity Low_complexity 1 25 0 3319 159 3 52 chr6 4222788 4223234 -178192008 + MER73 LTR ERVL 15 422 -222 2312 89 3 29 chr6 4223234 4223548 -178191694 - AluY SINE Alu -5 306 1 3319 159 3 52 chr6 4223548 4223735 -178191507 + MER73 LTR ERVL 422 617 -27 1325 149 14 0 chr6 4223736 4223944 -178191298 - THE1C LTR MaLR 0 375 165 330 252 43 0 chr6 4224123 4224238 -178191004 - THE1C LTR MaLR -246 129 10 535 216 7 14 chr6 4224252 4224391 -178190851 - THE1C-int LTR MaLR -4 1576 1439 * 7247 119 34 41 chr6 4224386 4225661 -178189581 - THE1C-int LTR MaLR -367 1213 3 2810 102 11 3 chr6 4225663 4226035 -178189207 - THE1C LTR MaLR 0 375 1 350 301 175 35 chr6 4226341 4226570 -178188672 - MIR SINE MIR 0 262 2 678 240 17 28 chr6 4226579 4226758 -178188484 + MER5B DNA MER1_type 1 177 -1 282 164 0 0 chr6 4226794 4226849 -178188393 + (CA)n Simple_repeat Simple_repeat 2 56 0 520 321 75 11 chr6 4227179 4227459 -178187783 + MER102a DNA MER1_type 1 298 -32 2393 127 36 30 chr6 4228051 4228413 -178186829 + THE1B LTR MaLR 1 364 0 12321 90 13 10 chr6 4228413 4229989 -178185253 + THE1B-int LTR MaLR 1 1580 0 1069 169 55 32 chr6 4229991 4230210 -178185032 + THE1B LTR MaLR 3 226 -149 494 249 15 88 chr6 4230221 4230426 -178184816 + LTR4 LTR ERV1 10 199 -397 394 267 48 30 chr6 4230619 4230784 -178184458 + LTR4 LTR ERV1 318 485 -111 8681 163 27 27 chr6 4230795 4232405 -178182837 + L1P LINE L1 11 1620 -4526 1661 155 79 65 chr6 4232420 4232693 -178182549 + HERVL74 LTR ERVL 1243 1525 -4160 1908 128 0 21 chr6 4232693 4233003 -178182239 + AluSx SINE Alu 1 304 0 1661 155 79 65 chr6 4233003 4233095 -178182147 + HERVL74 LTR ERVL 1525 1614 -4071 1742 159 101 29 chr6 4233098 4233186 -178182056 + L1MA4 LINE L1 5642 5722 -578 1527 182 0 0 chr6 4233186 4233428 -178181814 + AluSx SINE Alu 1 242 -70 1742 159 101 29 chr6 4233428 4233459 -178181783 + L1MA4 LINE L1 5722 5749 -551 432 0 0 0 chr6 4233459 4233507 -178181735 + (CA)n Simple_repeat Simple_repeat 2 49 0 1742 159 101 29 chr6 4233507 4233764 -178181478 + L1MA4 LINE L1 5749 6046 -254 953 143 0 0 chr6 4233767 4233900 -178181342 + FLAM_C SINE Alu 1 133 -10 787 309 77 3 chr6 4233924 4234290 -178180952 + L1ME LINE L1 4910 5302 -844 453 53 0 0 chr6 4234290 4234347 -178180895 - U2 snRNA snRNA -125 63 7 1731 41 0 0 chr6 4234347 4234543 -178180699 + L1PA5 LINE L1 5959 6154 0 408 230 29 7 chr6 4234545 4234703 -178180539 + L1ME LINE L1 5328 5486 -678 18806 127 20 56 chr6 4234716 4238086 -178177156 + L1P LINE L1 12 3260 -2886 19229 78 18 5 chr6 4238262 4241502 -178173740 + L1PA6 LINE L1 2878 6153 -1 350 165 87 58 chr6 4241502 4241605 -178173637 + LTR4 LTR ERV1 477 582 -14 * 826 175 75 12 chr6 4241600 4241760 -178173482 + THE1B LTR MaLR 193 362 -2 225 204 0 0 chr6 4241997 4242041 -178173201 + (TAAA)n Simple_repeat Simple_repeat 2 45 0 911 217 44 113 chr6 4242138 4242641 -178172601 + LTR37B LTR ERV1 1 468 0 1565 231 50 29 chr6 4242649 4243104 -178172138 - L1MC4 LINE L1 -96 7946 7482 715 240 0 0 chr6 4243591 4243720 -178171522 + FLAM_A SINE Alu 1 129 -4 2869 259 97 16 chr6 4244749 4245841 -178169401 - L1M4 LINE L1 -1824 4322 3143 1301 190 62 0 chr6 4245879 4246137 -178169105 - AluJo SINE Alu -38 274 1 454 237 0 0 chr6 4246206 4246345 -178168897 + L1M4 LINE L1 3047 3185 -2961 1099 281 101 14 chr6 4246824 4246932 -178168310 + HERV16 LTR ERVL 871 968 -4028 1919 60 0 9 chr6 4246932 4247164 -178168078 - AluY SINE Alu -14 297 68 1099 281 101 14 chr6 4247164 4247479 -178167763 + HERV16 LTR ERVL 968 1331 -3665 285 29 0 0 chr6 4247755 4247789 -178167453 + (TG)n Simple_repeat Simple_repeat 2 35 0 2533 108 57 5 chr6 4247892 4248262 -178166980 - L1PA11 LINE L1 -1 6173 5785 2255 125 3 0 chr6 4248268 4248579 -178166663 - AluSx SINE Alu 0 312 1 25 0 0 0 chr6 4249564 4249589 -178165653 + AT_rich Low_complexity Low_complexity 1 25 0 2852 109 144 2 chr6 4249747 4250213 -178165029 - THE1C-int LTR MaLR -1045 535 4 1974 150 64 25 chr6 4250216 4250577 -178164665 - THE1C LTR MaLR 0 375 1 4443 195 19 20 chr6 4250607 4250932 -178164310 - L1MA9 LINE L1 -161 6151 5827 2241 103 0 16 chr6 4250932 4251242 -178164000 - AluY SINE Alu -6 305 1 4443 195 19 20 chr6 4251242 4251275 -178163967 - L1MA9 LINE L1 -485 5827 5795 348 24 0 0 chr6 4251275 4251316 -178163926 + (CA)n Simple_repeat Simple_repeat 2 42 0 4443 195 19 20 chr6 4251316 4251761 -178163481 - L1MA9 LINE L1 -517 5795 5351 2344 101 0 0 chr6 4251761 4252058 -178163184 - AluSx SINE Alu -15 297 1 2421 74 0 3 chr6 4252063 4252362 -178162880 - AluY SINE Alu -13 298 1 4443 195 19 20 chr6 4252362 4252945 -178162297 - L1MA9 LINE L1 -965 5347 4765 930 221 67 0 chr6 4252947 4253142 -178162100 - AluJb SINE Alu -23 289 82 204 327 47 4 chr6 4303408 4303502 -178111740 + MIR SINE MIR 3 106 -102 574 274 177 23 chr6 4303513 4303903 -178111339 + MLT1J2 LTR MaLR 1 450 0 2473 57 0 0 chr6 4304017 4304315 -178110927 + AluY SINE Alu 2 299 -12 356 259 144 14 chr6 4304644 4304783 -178110459 - L1ME4a LINE L1 -1 6120 5964 609 235 86 29 chr6 4304888 4305131 -178110111 - L1ME4a LINE L1 -177 5944 5688 2599 194 20 20 chr6 4305379 4305885 -178109357 + MLT2B2 LTR ERVL 2 507 -8 694 194 19 0 chr6 4306024 4306184 -178109058 + CT-rich Low_complexity Low_complexity 4 166 0 4471 184 40 25 chr6 4306202 4307817 -178107425 - L1MB7 LINE L1 -16 6168 4530 2172 118 0 0 chr6 4308084 4308389 -178106853 + AluSq SINE Alu 1 305 -8 196 284 28 110 chr6 4308510 4308619 -178106623 + MIR SINE MIR 36 135 -73 186 303 67 0 chr6 4310379 4310468 -178104774 - L2 LINE L2 -57 3215 3121 192 366 113 7 chr6 4310549 4310691 -178104551 - L2 LINE L2 -169 3103 2947 204 186 17 85 chr6 4310920 4310979 -178104263 - L2 LINE L2 -488 2826 2772 310 290 86 38 chr6 4311080 4311266 -178103976 + MER102b DNA MER1_type 126 320 -21 550 307 199 28 chr6 4312431 4312454 -178102788 - L2 LINE L2 0 3272 3254 1504 256 103 2 chr6 4312454 4312900 -178102342 - LTR16C LTR ERVL 0 491 1 550 307 199 28 chr6 4312900 4313202 -178102040 - L2 LINE L2 -18 3254 2891 2335 68 0 0 chr6 4313203 4313497 -178101745 + AluY SINE Alu 1 294 -17 1816 167 7 0 chr6 4313890 4314196 -178101046 - Tigger3(Golem) DNA MER2_type -1 3028 2721 385 231 77 0 chr6 4314188 4314266 -178100976 - Tigger3(Golem) DNA MER2_type -2935 94 11 * 781 220 146 14 chr6 4314294 4314564 -178100678 + MLT1G1 LTR MaLR 1 260 -330 437 171 40 51 chr6 4314624 4314800 -178100442 + (TAGA)n Simple_repeat Simple_repeat 3 176 0 213 285 149 22 chr6 4316182 4316321 -178098921 - L2 LINE L2 -174 3098 2941 629 269 83 25 chr6 4316444 4316681 -178098561 - MIR SINE MIR 0 262 14 332 297 51 8 chr6 4316721 4316839 -178098403 + MER5A DNA MER1_type 43 165 -24 492 353 22 11 chr6 4316930 4317114 -178098128 + MIR3 SINE MIR 16 201 -7 2586 163 39 34 chr6 4317179 4317217 -178098025 - MLT1C LTR MaLR 0 467 431 2045 95 0 79 chr6 4317217 4317534 -178097708 + AluSq SINE Alu 1 292 -21 2586 163 39 34 chr6 4317534 4317960 -178097282 - MLT1C LTR MaLR -36 431 1 7109 141 47 23 chr6 4318038 4318688 -178096554 + Tigger3b DNA MER2_type 1 695 -2333 1778 164 6 41 chr6 4318688 4318866 -178096376 - AluJo SINE Alu -6 306 142 2022 145 0 7 chr6 4318866 4319162 -178096080 - AluSx SINE Alu -18 294 1 1778 164 6 41 chr6 4319162 4319300 -178095942 - AluJo SINE Alu -170 142 1 7109 141 47 23 chr6 4319300 4319851 -178095391 + Tigger3b DNA MER2_type 695 1231 0 469 247 33 54 chr6 4320129 4320352 -178094890 + L1ME4a LINE L1 5559 5718 -403 996 227 145 93 chr6 4320397 4321142 -178094100 - MER20B DNA MER1_type 0 784 1 253 258 81 32 chr6 4321348 4321472 -178093770 + L1ME4a LINE L1 5992 6121 0 1658 160 7 21 chr6 4321494 4321815 -178093427 + AluSx SINE Alu 1 317 0 1160 193 33 0 chr6 4321830 4322042 -178093200 - MER20 DNA MER1_type 0 219 1 467 279 123 18 chr6 4322044 4322263 -178092979 + MIR SINE MIR 9 250 -12 827 217 16 27 chr6 4323975 4324159 -178091083 + MER5A DNA MER1_type 1 182 -7 1365 195 92 23 chr6 4324176 4324479 -178090763 - MER2 DNA MER2_type 0 345 22 313 370 92 40 chr6 4325058 4325285 -178089957 - L2 LINE L2 -4 3268 3030 4342 133 8 39 chr6 4325678 4326401 -178088841 + MER50 LTR ERV1 34 734 0 206 333 63 0 chr6 4327468 4327531 -178087711 + MIR SINE MIR 23 89 -173 2319 184 29 86 chr6 4327735 4328317 -178086925 + MLT2B3 LTR ERVL 6 554 0 189 291 214 0 chr6 4328632 4328735 -178086507 + L3 LINE CR1 1105 1229 -348 21 0 0 0 chr6 4329678 4329699 -178085543 + AT_rich Low_complexity Low_complexity 1 21 0 2132 122 0 0 chr6 4331113 4331401 -178083841 - AluSg1 SINE Alu -21 288 1 215 303 40 0 chr6 4331454 4331530 -178083712 - MER5A DNA MER1_type -110 79 1 290 297 318 8 chr6 4332331 4332570 -178082672 - L2 LINE L2 -1 3271 2959 27 0 0 0 chr6 4333041 4333068 -178082174 + AT_rich Low_complexity Low_complexity 1 27 0 1751 91 0 28 chr6 4333415 4333668 -178081574 - L1PA14 LINE L1 -530 5631 5386 3431 104 34 8 chr6 4333669 4334168 -178081074 + L1PA14 LINE L1 5650 6161 0 1015 253 48 83 chr6 4334226 4334640 -178080602 + L2 LINE L2 2766 3152 -161 3984 114 22 5 chr6 4334640 4335230 -178080012 - L1MC1 LINE L1 -11 6322 5723 1015 253 48 83 chr6 4335230 4335387 -178079855 + L2 LINE L2 3152 3313 0 414 322 72 11 chr6 4335672 4335937 -178079305 + L1M2 LINE L1 5286 5566 -601 395 298 113 31 chr6 4336179 4336471 -178078771 - MER97c DNA MER1_type? -1 1089 774 738 176 0 40 chr6 4336688 4336836 -178078406 - MER97a DNA MER1_type? -270 624 483 2381 94 7 0 chr6 4336860 4337168 -178078074 - AluSg SINE Alu 0 310 1 1606 208 61 21 chr6 4337168 4337547 -178077695 - MER97c DNA MER1_type? -689 401 8 387 202 34 0 chr6 4337640 4337729 -178077513 - L1M4 LINE L1 -1210 5118 5027 5814 213 37 49 chr6 4337729 4339464 -178075778 + L1 LINE L1 1160 2871 -3917 2709 168 14 0 chr6 4339464 4339976 -178075266 + L1 LINE L1 4960 5478 -1310 7461 182 33 15 chr6 4339992 4341932 -178073310 - L1M4 LINE L1 -4065 1263 3 892 219 214 21 chr6 4341933 4342321 -178072921 - L1M4 LINE L1 -1371 4957 4495 616 232 112 21 chr6 4342844 4343129 -178072113 + L1ME4a LINE L1 5808 6118 -3 767 191 40 12 chr6 4344468 4344641 -178070601 + MER5B DNA MER1_type 1 178 0 400 195 0 37 chr6 4345800 4345882 -178069360 + MER21B LTR ERV1 12 90 -773 2739 228 55 50 chr6 4345904 4346723 -178068519 + MER21B LTR ERV1 19 841 -22 363 248 139 0 chr6 4347351 4347452 -178067790 + MIR SINE MIR 73 187 -75 368 273 169 23 chr6 4347526 4347698 -178067544 - MIR SINE MIR -43 219 23 2017 106 7 0 chr6 4347746 4348021 -178067221 - AluSx SINE Alu 0 312 36 485 263 79 7 chr6 4350716 4350868 -178064374 + MIR3 SINE MIR 24 186 -22 191 326 153 33 chr6 4350998 4351240 -178064002 + L2 LINE L2 2704 2974 -340 2376 87 7 3 chr6 4352061 4352359 -178062883 + AluSq SINE Alu 1 299 -14 3724 210 71 28 chr6 4352367 4354119 -178061123 - L1ME1 LINE L1 -5 6230 4400 534 217 129 42 chr6 4354190 4354407 -178060835 + MER106A DNA MER1_type 1 236 0 1740 309 22 18 chr6 4354612 4355322 -178059920 - L1ME1 LINE L1 -5607 789 77 259 297 76 0 chr6 4355585 4355703 -178059539 + L1MEd LINE L1 6 132 -5987 451 281 16 8 chr6 4355782 4355910 -178059332 + L2 LINE L2 3185 3313 0 988 284 66 33 chr6 4356185 4356642 -178058600 + L1MEd LINE L1 459 930 -5189 338 339 109 16 chr6 4356655 4356847 -178058395 + HAL1 LINE L1 1560 1769 -738 43319 34 25 1 chr6 4356908 4362913 -178052329 - L1PA3 LINE L1 0 6155 2 324 274 110 40 chr6 4362997 4363351 -178051891 + L1M4 LINE L1 4132 4510 -1636 2555 270 148 31 chr6 4363359 4364544 -178050698 - L2 LINE L2 -701 2613 1291 314 347 57 6 chr6 4364545 4364721 -178050521 + L1M4 LINE L1 4961 5145 -1001 4856 152 73 42 chr6 4364746 4365597 -178049645 + LTR13 LTR ERVK 1 885 -69 2319 91 0 3 chr6 4365597 4365895 -178049347 - AluY SINE Alu -14 297 1 4856 152 73 42 chr6 4365895 4365968 -178049274 + LTR13 LTR ERVK 885 954 0 12697 122 39 6 chr6 4365973 4368259 -178046983 - Tigger4(Zombi) DNA MER2_type 0 2731 330 549 0 0 0 chr6 4368259 4368320 -178046922 + (CA)n Simple_repeat Simple_repeat 2 62 0 12697 122 39 6 chr6 4368320 4368661 -178046581 - Tigger4(Zombi) DNA MER2_type -2401 330 2 1812 312 120 18 chr6 4368676 4369665 -178045577 + L2 LINE L2 1812 2901 -413 427 300 91 36 chr6 4369706 4369926 -178045316 + L2 LINE L2 3014 3245 -68 2116 226 100 26 chr6 4370058 4371217 -178044025 + L1ME2 LINE L1 4853 6130 -34 271 297 0 11 chr6 4371457 4371548 -178043694 + GA-rich Low_complexity Low_complexity 3 92 0 185 178 22 0 chr6 4371582 4371627 -178043615 + GA-rich Low_complexity Low_complexity 1 46 0 308 347 82 33 chr6 4372227 4372472 -178042770 - L2 LINE L2 -10 3262 3006 500 324 24 34 chr6 4372692 4372899 -178042343 + MIR SINE MIR 36 240 -22 1229 255 86 14 chr6 4373676 4374111 -178041131 - MLT1F LTR MaLR -18 524 24 1187 120 0 0 chr6 4374396 4374586 -178040656 - AluSg/x SINE Alu 0 316 127 244 292 124 29 chr6 4374952 4375089 -178040153 - MIR SINE MIR -79 183 34 328 302 13 13 chr6 4375533 4375692 -178039550 + CT-rich Low_complexity Low_complexity 1 159 0 2346 100 0 10 chr6 4377053 4377364 -178037878 - AluY SINE Alu -3 308 1 639 282 29 28 chr6 4378201 4378566 -178036676 + LTR16B LTR ERVL 34 451 -13 278 263 185 24 chr6 4378605 4378810 -178036432 - L2 LINE L2 -529 2785 2548 368 259 70 49 chr6 4378897 4379040 -178036202 + MIR3 SINE MIR 20 165 -43 366 181 14 0 chr6 4379081 4379153 -178036089 - L1MB3 LINE L1 -23 6160 6088 2393 166 32 11 chr6 4379280 4379749 -178035493 - L1MB3 LINE L1 -93 6090 5612 200 152 0 0 chr6 4380068 4380101 -178035141 + MIR3 SINE MIR 167 199 -9 346 325 0 9 chr6 4381065 4381179 -178034063 + LTR16A LTR ERVL 25 137 -313 939 250 118 49 chr6 4381815 4382247 -178032995 + LTR16B LTR ERVL 1 462 -2 214 232 29 58 chr6 4382778 4382847 -178032395 + L2 LINE L2 3132 3198 -74 1971 144 44 0 chr6 4382916 4383214 -178032028 - AluSx SINE Alu -1 311 1 335 271 34 126 chr6 4383401 4383751 -178031491 - L2 LINE L2 -37 3235 2918 5803 107 38 5 chr6 4384053 4384412 -178030830 - L1PA15 LINE L1 -5 6160 5814 387 0 0 0 chr6 4384412 4384455 -178030787 + (TG)n Simple_repeat Simple_repeat 2 44 0 5803 107 38 5 chr6 4384455 4385019 -178030223 - L1PA15 LINE L1 -351 5814 5213 426 94 0 0 chr6 4385805 4385869 -178029373 + (GGAA)n Simple_repeat Simple_repeat 1 64 0 3293 32 0 0 chr6 4386104 4386484 -178028758 + L1PA3 LINE L1 5775 6154 -1 403 232 13 73 chr6 4387599 4387750 -178027492 + MIR3 SINE MIR 10 151 -57 226 279 15 15 chr6 4387954 4388022 -178027220 - L2 LINE L2 0 3313 3246 2533 146 18 18 chr6 4389667 4389827 -178025415 - L1MB3 LINE L1 -2 6181 6022 1689 176 63 39 chr6 4389827 4390208 -178025034 - MLT1B LTR MaLR 0 390 1 2533 146 18 18 chr6 4390208 4390485 -178024757 - L1MB3 LINE L1 -160 6023 5744 249 333 23 0 chr6 4390531 4390618 -178024624 + L2 LINE L2 3184 3272 0 239 281 31 62 chr6 4390634 4390730 -178024512 - MIR SINE MIR -76 186 94 1073 189 19 0 chr6 4390982 4391194 -178024048 + MER20 DNA MER1_type 1 216 -3 513 260 73 50 chr6 4391767 4391986 -178023256 - MIR SINE MIR -14 248 25 1896 160 47 25 chr6 4392088 4392550 -178022692 - MLT2B1 LTR ERVL -1 514 1 814 217 84 57 chr6 4393076 4393408 -178021834 - LTR16A1 LTR ERVL 0 457 117 750 264 11 0 chr6 4396030 4396204 -178019038 - MER5A DNA MER1_type 0 189 14 337 273 102 8 chr6 4396311 4396439 -178018803 - MIR SINE MIR -69 193 54 261 259 71 0 chr6 4396432 4396517 -178018725 - MER5B DNA MER1_type -87 91 1 * 359 292 31 8 chr6 4396888 4397018 -178018224 - LTR33 LTR ERVL 0 521 389 435 255 64 64 chr6 4397051 4397134 -178018108 - LTR33 LTR ERVL -250 271 189 865 241 45 5 chr6 4397134 4397333 -178017909 + MER63A DNA MER1_type 4 210 0 435 255 64 64 chr6 4397333 4397453 -178017789 - LTR33 LTR ERVL -331 190 68 234 281 18 0 chr6 4397849 4397906 -178017336 - L2 LINE L2 -6 3266 3209 489 237 168 5 chr6 4397975 4398165 -178017077 - LTR33A LTR ERVL -5 518 298 271 242 216 20 chr6 4398223 4398376 -178016866 - LTR33A LTR ERVL -339 184 2 2750 163 25 48 chr6 4398548 4398614 -178016628 - MLT2B2 LTR ERVL -2 513 447 2075 111 7 14 chr6 4398614 4398933 -178016309 - AluSx SINE Alu 0 317 1 2750 163 25 48 chr6 4398933 4399387 -178015855 - MLT2B2 LTR ERVL -68 447 3 317 272 39 19 chr6 4399629 4399732 -178015510 - MIR SINE MIR -67 141 37 561 262 13 13 chr6 4400064 4400213 -178015029 + MER63A DNA MER1_type 60 208 -2 753 224 13 69 chr6 4400482 4400714 -178014528 + MIR SINE MIR 44 262 0 520 296 96 50 chr6 4400841 4401121 -178014121 - L3 LINE CR1 -14 1563 1271 189 172 0 0 chr6 4401421 4401450 -178013792 - L3 LINE CR1 -303 1274 1246 305 256 80 16 chr6 4402775 4402900 -178012342 + L2 LINE L2 2132 2264 -1050 1756 140 146 3 chr6 4402984 4403327 -178011915 + Ricksha DNA DNA 30 421 -2825 250 288 85 25 chr6 4403588 4403706 -178011536 + L2 LINE L2 2648 2772 -542 374 244 17 122 chr6 4403714 4403839 -178011403 - MIR SINE MIR -4 258 154 2408 102 0 7 chr6 4403839 4404144 -178011098 - AluSx SINE Alu -9 303 1 374 244 17 122 chr6 4404144 4404190 -178011052 - MIR SINE MIR -108 154 105 237 305 40 46 chr6 4404798 4404949 -178010293 + L2 LINE L2 2919 3068 -204 316 245 91 42 chr6 4405612 4405755 -178009487 + MIR SINE MIR 83 232 -30 218 203 31 62 chr6 4405729 4405793 -178009449 + L2 LINE L2 3252 3313 0 * 2087 123 17 17 chr6 4406091 4406391 -178008851 + AluSq SINE Alu 1 300 -13 266 264 47 28 chr6 4407172 4407278 -178007964 - L3 LINE CR1 -390 1187 1080 267 289 197 5 chr6 4408587 4408747 -178006495 - MIR SINE MIR -50 212 15 200 326 84 21 chr6 4408906 4409001 -178006241 - MIR3 SINE MIR -102 106 6 302 235 47 12 chr6 4409013 4409098 -178006144 - MIR SINE MIR -69 139 52 385 234 171 0 chr6 4410149 4410260 -178004982 - MER91C DNA MER1_type -10 130 1 1440 149 54 0 chr6 4411510 4411751 -178003491 + AluJo SINE Alu 48 301 -11 1723 213 57 31 chr6 4412036 4412481 -178002761 + LTR10B LTR ERV1 1 547 0 8575 243 53 71 chr6 4412481 4415717 -177999525 + HERVI LTR ERV1 1 3177 -4608 187 276 0 95 chr6 4415724 4415829 -177999413 - L3b LINE CR1 -283 1300 1206 9236 221 6 18 chr6 4415833 4417802 -177997440 + BaEV-int LTR ERV1 4419 6364 -285 696 333 56 0 chr6 4418408 4418639 -177996603 - MIR SINE MIR -5 257 14 245 252 37 37 chr6 4418667 4418774 -177996468 - L1ME4a LINE L1 -48 6073 5967 243 241 81 0 chr6 4418879 4418966 -177996276 - L1ME4a LINE L1 -319 5802 5709 503 209 73 72 chr6 4418970 4419203 -177996039 + MLT1H LTR MaLR 1 278 -271 259 176 189 0 chr6 4419342 4419416 -177995826 + MLT1G LTR MaLR 495 582 -8 237 287 96 37 chr6 4419725 4419861 -177995381 - L1ME4a LINE L1 -595 5526 5383 263 230 0 120 chr6 4419912 4420012 -177995230 - L1ME2 LINE L1 -138 6026 5939 1686 118 8 0 chr6 4420087 4420332 -177994910 - L1MA5A LINE L1 0 6297 6051 1360 150 0 5 chr6 4420833 4421046 -177994196 + AluSx SINE Alu 1 212 -100 365 121 0 0 chr6 4421047 4421105 -177994137 + AluYb8 SINE Alu 77 134 -174 2237 118 0 9 chr6 4421105 4421420 -177993822 + AluSq SINE Alu 1 312 -1 575 122 0 0 chr6 4421421 4421511 -177993731 - L1P LINE L1 -851 5295 5206 2799 46 3 6 chr6 4421511 4421834 -177993408 + L1PA8 LINE L1 5838 6165 -7 234 227 0 0 chr6 4422003 4422047 -177993195 + L2 LINE L2 3219 3262 -10 557 266 117 0 chr6 4422521 4422675 -177992567 - MIR3 SINE MIR -3 205 34 2206 203 40 143 chr6 4423762 4425073 -177990169 + L1ME3 LINE L1 4987 6153 -9 517 177 32 24 chr6 4425073 4425197 -177990045 + L1MB2 LINE L1 6047 6171 0 275 188 42 0 chr6 4425207 4425255 -177989987 + MLT1L LTR MaLR 337 386 -81 21 0 0 0 chr6 4425373 4425394 -177989848 + AT_rich Low_complexity Low_complexity 1 21 0 221 248 239 44 chr6 4425882 4425995 -177989247 - L2 LINE L2 0 3313 3179 495 205 94 60 chr6 4426313 4426547 -177988695 + MLT1L LTR MaLR 38 279 -336 323 284 118 6 chr6 4426602 4426771 -177988471 + MLT1L LTR MaLR 394 581 -34 483 289 8 0 chr6 4427199 4427320 -177987922 - MER5A DNA MER1_type -67 122 1 185 282 99 56 chr6 4427415 4427486 -177987756 + MIR SINE MIR 111 184 -78 298 271 232 22 chr6 4429507 4429688 -177985554 - MIR SINE MIR -38 224 6 210 214 18 36 chr6 4429722 4429778 -177985464 + L2 LINE L2 3215 3269 -3 183 129 0 0 chr6 4430652 4430683 -177984559 + (TTCA)n Simple_repeat Simple_repeat 2 32 0 217 236 91 0 chr6 4431346 4431401 -177983841 + MIR SINE MIR 61 120 -142 803 174 0 0 chr6 4433158 4433279 -177981963 + FLAM_A SINE Alu 1 121 -12 24 0 0 0 chr6 4433423 4433447 -177981795 + AT_rich Low_complexity Low_complexity 1 24 0 10006 159 7 31 chr6 4433507 4436589 -177978653 + L1PA8A LINE L1 5 3071 -3390 201 74 0 0 chr6 4436602 4436629 -177978613 + (GAAAA)n Simple_repeat Simple_repeat 2 28 0 18527 112 8 14 chr6 4436629 4439259 -177975983 + L1PA8A LINE L1 3051 5670 -776 2198 63 41 0 chr6 4439259 4439552 -177975690 + AluY SINE Alu 1 304 0 18527 112 8 14 chr6 4439552 4440313 -177974929 + L1PA8A LINE L1 5670 6434 -12 188 349 0 0 chr6 4440450 4440513 -177974729 - L2 LINE L2 -249 3064 3002 197 267 50 0 chr6 4440990 4441050 -177974192 + L2 LINE L2 3250 3312 -1 28 0 0 0 chr6 4441194 4441222 -177974020 + AT_rich Low_complexity Low_complexity 1 28 0 468 252 164 25 chr6 4441353 4441512 -177973730 + MER5A DNA MER1_type 9 189 0 664 52 0 0 chr6 4442057 4442134 -177973108 - MER4B LTR ERV1 0 610 534 251 250 0 0 chr6 4442146 4442198 -177973044 + LTR30 LTR ERV1 1 52 -670 1005 134 38 91 chr6 4442198 4442475 -177972767 + LTR12 LTR ERV1 55 230 -484 275 227 98 30 chr6 4442483 4442615 -177972627 + LTR12 LTR ERV1 142 282 -432 368 186 35 0 chr6 4442617 4442703 -177972539 + LTR30 LTR ERV1 551 639 -83 687 102 0 0 chr6 4442706 4442794 -177972448 + LTR12 LTR ERV1 478 565 -149 334 94 9 13 chr6 4442794 4442854 -177972388 - MLT2D LTR ERVL -370 44 1 457 284 99 12 chr6 4443095 4443257 -177971985 + MIR SINE MIR 8 183 -79 276 231 77 0 chr6 4443282 4443360 -177971882 - L2 LINE L2 -17 3296 3213 598 224 29 81 chr6 4443965 4444338 -177970904 + MLT1D LTR MaLR 20 356 -149 474 264 31 0 chr6 4444408 4444537 -177970705 + L1MEc LINE L1 1509 1641 -4755 361 286 119 30 chr6 4444540 4444708 -177970534 + MIR SINE MIR 68 250 -12 2470 123 37 13 chr6 4444942 4445323 -177969919 - MLT1B LTR MaLR 0 390 1 4860 265 63 34 chr6 4445520 4446360 -177968882 + L1MEc LINE L1 2112 2926 -3289 2109 105 44 0 chr6 4446360 4446656 -177968586 + AluY SINE Alu 1 309 -2 4860 265 63 34 chr6 4446656 4448105 -177967137 + L1MEc LINE L1 2926 4436 -1779 8875 223 70 42 chr6 4448113 4449356 -177965886 + L1MCb LINE L1 180 1387 -5177 1552 211 7 3 chr6 4449356 4449664 -177965578 + AluJo SINE Alu 1 309 -3 8875 223 70 42 chr6 4449664 4450010 -177965232 + L1MCb LINE L1 1387 1722 -4842 2203 138 53 28 chr6 4450010 4450365 -177964877 - THE1B LTR MaLR 0 364 1 8875 223 70 42 chr6 4450365 4453021 -177962221 + L1MCb LINE L1 1722 4630 -1934 2182 118 0 6 chr6 4453021 4453334 -177961908 + AluY SINE Alu 1 311 0 8875 223 70 42 chr6 4453334 4454092 -177961150 + L1MCb LINE L1 4630 5365 -1199 2305 78 0 7 chr6 4454162 4454469 -177960773 - AluSx SINE Alu 0 305 1 1123 8 0 0 chr6 4456116 4456236 -177959006 + 5S rRNA rRNA 1 120 -1 3713 50 2 0 chr6 4456236 4456698 -177958544 - Harlequin LTR ERV1 -6329 567 105 186 216 318 34 chr6 4456780 4456868 -177958374 + MER5A DNA MER1_type 1 113 -76 728 210 24 24 chr6 4456869 4457036 -177958206 + MER5A DNA MER1_type 1 167 -22 194 259 111 0 chr6 4457045 4457099 -177958143 + MER5A DNA MER1_type 110 169 -20 2598 192 65 2 chr6 4457495 4458015 -177957227 + MER74A LTR ERVL 6 558 0 291 329 81 13 chr6 4458416 4458565 -177956677 + MIR SINE MIR 100 258 -4 999 164 66 33 chr6 4458816 4458975 -177956267 + MER5A DNA MER1_type 1 168 -21 2098 135 66 14 chr6 4458975 4459322 -177955920 + MLT1A1 LTR MaLR 1 365 0 999 164 66 33 chr6 4459322 4459345 -177955897 + MER5A DNA MER1_type 168 189 0 1922 144 47 39 chr6 4459784 4460144 -177955098 - MLT1A1 LTR MaLR -2 363 1 497 194 10 10 chr6 4460552 4460655 -177954587 + MER5B DNA MER1_type 73 175 -3 2378 109 0 0 chr6 4461056 4461368 -177953874 - AluSx SINE Alu 0 312 1 2195 171 94 20 chr6 4461620 4462065 -177953177 + MLT2B2 LTR ERVL 1 478 -37 2095 74 4 4 chr6 4462500 4462770 -177952472 + AluSc SINE Alu 39 308 -1 1752 248 47 39 chr6 4463051 4463544 -177951698 + MLT1J LTR MaLR 7 503 -8 1223 174 43 13 chr6 4463702 4463932 -177951310 - MER96B DNA MER1_type? -180 237 1 262 171 0 0 chr6 4464420 4464461 -177950781 - 5S rRNA rRNA -79 42 2 306 0 0 0 chr6 4464705 4464739 -177950503 + (CA)n Simple_repeat Simple_repeat 1 34 0 2903 222 75 48 chr6 4464745 4465533 -177949709 + MER21B LTR ERV1 16 824 -39 4971 150 49 3 chr6 4466315 4467149 -177948093 + L1MA4A LINE L1 4443 5237 -1066 182 61 0 30 chr6 4467149 4467182 -177948060 + (CAAAA)n Simple_repeat Simple_repeat 4 35 0 4971 150 49 3 chr6 4467182 4467978 -177947264 + L1MA4A LINE L1 5237 6143 -160 1531 181 69 0 chr6 4467978 4468255 -177946987 + AluJb SINE Alu 1 296 -16 1986 136 0 10 chr6 4468302 4468597 -177946645 - L1PB1 LINE L1 -1 6150 5859 2300 82 38 0 chr6 4468597 4468888 -177946354 + AluSg SINE Alu 1 302 -8 259 254 16 32 chr6 4469040 4469103 -177946139 - L1M3c LINE L1 -6078 63 2 291 200 125 0 chr6 4469119 4469199 -177946043 - L1MC3 LINE L1 -8 7777 7688 222 303 13 0 chr6 4469206 4469282 -177945960 - L2 LINE L2 -2382 932 856 991 255 111 12 chr6 4469291 4469616 -177945626 - MLT1I LTR MaLR -25 384 28 2411 283 27 35 chr6 4469617 4470443 -177944799 - L2 LINE L2 -2479 835 17 284 238 38 12 chr6 4470751 4470831 -177944411 - L2 LINE L2 -1877 1437 1356 716 252 59 64 chr6 4470844 4471224 -177944018 - L1M4 LINE L1 -1602 4544 4165 2336 109 0 3 chr6 4471224 4471535 -177943707 - AluSg SINE Alu 0 310 1 716 252 59 64 chr6 4471535 4471594 -177943648 - L1M4 LINE L1 -1981 4165 4107 289 287 39 62 chr6 4471606 4471864 -177943378 - L1MEd LINE L1 -5164 955 704 771 216 30 24 chr6 4471865 4472032 -177943210 - FRAM SINE Alu -16 160 1 267 279 51 0 chr6 4472032 4472111 -177943131 - L1MEd LINE L1 -5416 703 621 4483 169 52 6 chr6 4472244 4473064 -177942178 - L1MD1 LINE L1 0 6242 5385 1808 37 0 5 chr6 4473276 4473492 -177941750 - L1PA5 LINE L1 -1 6153 5939 1430 251 48 5 chr6 4473492 4473910 -177941332 - L1MD1 LINE L1 -745 5401 4966 1250 276 59 46 chr6 4474083 4474644 -177940598 + Charlie7 DNA MER1_type 120 687 -1925 486 239 39 72 chr6 4474660 4474840 -177940402 - MLT1J LTR MaLR -12 499 326 294 164 0 0 chr6 4474841 4474902 -177940340 - L1MC3 LINE L1 -727 7058 6998 * 854 54 1 1 chr6 4474877 4474902 -177940340 + L1P LINE L1 5225 5249 -897 1384 19 0 0 chr6 4474902 4475059 -177940183 - L1PA4 LINE L1 -5 6150 5994 854 54 1 1 chr6 4475059 4475163 -177940079 + L1P LINE L1 5248 5354 -792 180 0 0 0 chr6 4475928 4475948 -177939294 + (TG)n Simple_repeat Simple_repeat 2 21 0 325 181 38 9 chr6 4476778 4476883 -177938359 + (TA)n Simple_repeat Simple_repeat 1 108 0 281 299 132 29 chr6 4477196 4477370 -177937872 - MIR SINE MIR -1 261 70 182 36 0 36 chr6 4477516 4477544 -177937698 + (TTTTG)n Simple_repeat Simple_repeat 2 28 0 1217 55 0 0 chr6 4477544 4477689 -177937553 - MER107 DNA MER1_type -52 145 1 424 236 9 9 chr6 4477729 4477835 -177937407 + MER5B DNA MER1_type 73 178 0 327 307 9 0 chr6 4478108 4478222 -177937020 + L1ME LINE L1 5458 5572 -598 22 0 0 0 chr6 4478390 4478412 -177936830 + AT_rich Low_complexity Low_complexity 1 22 0 819 139 12 78 chr6 4478757 4478923 -177936319 + AluJo SINE Alu 85 239 -73 326 181 0 14 chr6 4478958 4479030 -177936212 + GA-rich Low_complexity Low_complexity 4 74 0 261 139 0 0 chr6 4479129 4479172 -177936070 + (GGGA)n Simple_repeat Simple_repeat 4 46 0 1936 254 75 34 chr6 4479437 4480295 -177934947 + L1MEc LINE L1 499 1391 -5005 259 259 76 0 chr6 4481106 4481237 -177934005 - L1ME4a LINE L1 -3 6118 5978 275 177 51 0 chr6 4481560 4481639 -177933603 + (TAA)n Simple_repeat Simple_repeat 1 83 0 240 324 59 0 chr6 4482119 4482221 -177933021 - L2 LINE L2 -932 2382 2275 247 296 241 0 chr6 4482852 4482960 -177932282 - MIR SINE MIR -77 185 52 215 274 71 36 chr6 4483049 4483133 -177932109 - MIR SINE MIR -58 204 118 504 270 77 62 chr6 4483974 4484233 -177931009 - MLT1J LTR MaLR -4 507 245 1837 192 25 25 chr6 4484578 4484943 -177930299 - MLT1A1 LTR MaLR 0 365 1 191 255 177 21 chr6 4484945 4485086 -177930156 - L2 LINE L2 -11 3302 3140 691 241 294 0 chr6 4486041 4486361 -177928881 + Charlie2a DNA MER1_type 7 420 -2442 861 246 29 14 chr6 4486395 4486671 -177928571 + Charlie2a DNA MER1_type 738 1017 -1845 410 182 0 23 chr6 4486668 4486756 -177928486 + Charlie2a DNA MER1_type 2748 2833 -29 * 248 278 0 0 chr6 4489128 4489200 -177926042 + tRNA-Ile-ATT tRNA tRNA 3 74 -3 229 216 0 0 chr6 4490545 4490596 -177924646 + MER116 DNA Mariner 25 75 -5 1792 175 3 19 chr6 4490683 4490991 -177924251 + AluJo SINE Alu 1 303 -9 675 294 58 39 chr6 4491000 4491381 -177923861 + L1ME4a LINE L1 5377 5764 -357 352 327 62 34 chr6 4491386 4491594 -177923648 + MIR SINE MIR 13 226 -36 319 212 73 53 chr6 4491772 4491923 -177923319 + L1ME4a LINE L1 5964 6117 -4 1744 140 135 83 chr6 4492325 4492769 -177922473 + MLT1C LTR MaLR 1 467 0 1569 167 50 83 chr6 4493271 4493655 -177921587 + MLT1A2 LTR MaLR 4 374 0 601 274 71 56 chr6 4493720 4493920 -177921322 - MLT1J LTR MaLR -238 273 67 2218 111 20 0 chr6 4493920 4494226 -177921016 - AluSx SINE Alu 0 312 1 601 274 71 56 chr6 4494226 4494277 -177920965 - MLT1J LTR MaLR -444 67 18 706 270 35 66 chr6 4494942 4495383 -177919859 + LTR35 LTR ERV1 134 556 0 2248 106 0 28 chr6 4496141 4496462 -177918780 - AluSq SINE Alu -1 312 1 265 200 18 0 chr6 4496708 4496763 -177918479 + L2 LINE L2 3257 3312 -1 340 234 19 37 chr6 4497254 4497361 -177917881 - MER5A DNA MER1_type -80 109 5 3655 7 0 3 chr6 4497575 4498118 -177917124 + L1P1 LINE L1 5119 5660 -495 185 74 56 37 chr6 4498122 4498176 -177917066 + A-rich Low_complexity Low_complexity 1 55 0 413 151 0 27 chr6 4498677 4498750 -177916492 - MER20 DNA MER1_type 0 219 149 4586 100 14 5 chr6 4498750 4499388 -177915854 - LTR9B LTR ERV1 0 644 1 3482 128 16 15 chr6 4499401 4499947 -177915295 + LTR10A LTR ERV1 1 547 -62 726 154 0 99 chr6 4499958 4500120 -177915122 - MER20 DNA MER1_type -73 146 1 299 217 85 40 chr6 4501585 4501735 -177913507 + L1ME4a LINE L1 5698 5854 -267 352 276 20 53 chr6 4501773 4501925 -177913317 + L1ME4a LINE L1 5975 6121 0 1102 189 112 18 chr6 4501964 4502461 -177912781 + MLT1E1 LTR MaLR 3 654 0 303 319 62 35 chr6 4502739 4502996 -177912246 + L2 LINE L2 1107 1370 -1944 4938 100 10 13 chr6 4503093 4503786 -177911456 - LTR8 LTR ERV1 0 691 1 1119 265 21 4 chr6 4503944 4504223 -177911019 - MER87 LTR ERV1 -48 493 210 241 292 124 11 chr6 4504295 4504384 -177910858 - LTR8 LTR ERV1 -566 125 27 352 311 152 20 chr6 4504452 4505012 -177910230 + L2 LINE L2 1636 2269 -1045 203 348 24 40 chr6 4505012 4505190 -177910052 + L2 LINE L2 2457 2631 -683 695 202 60 24 chr6 4505190 4505358 -177909884 + MER5B DNA MER1_type 1 174 -4 203 348 24 40 chr6 4505358 4505432 -177909810 + L2 LINE L2 2631 2705 -609 768 235 0 20 chr6 4505441 4505594 -177909648 + AluJo SINE Alu 2 151 -161 1221 205 73 14 chr6 4505595 4505883 -177909359 - MLT1A2 LTR MaLR -66 308 4 444 285 8 0 chr6 4506399 4506529 -177908713 + MIR SINE MIR 88 218 -44 1069 152 12 0 chr6 4507471 4507635 -177907607 - AluJb SINE Alu -146 166 1 1862 205 21 36 chr6 4507638 4508111 -177907131 - L1 LINE L1 -817 5329 4864 777 185 25 37 chr6 4508114 4508276 -177906966 - MLT1A2 LTR MaLR -214 160 1 773 135 0 0 chr6 4509553 4509664 -177905578 + L1 LINE L1 4864 4974 -1172 545 42 14 0 chr6 4511107 4511179 -177904063 + (GGAA)n Simple_repeat Simple_repeat 2 74 0 468 48 0 0 chr6 4511403 4511466 -177903776 + (CA)n Simple_repeat Simple_repeat 1 63 0 222 261 0 0 chr6 4511933 4511979 -177903263 + (TA)n Simple_repeat Simple_repeat 1 46 0 1360 177 129 33 chr6 4511998 4512332 -177902910 - MLT2D LTR ERVL -48 366 1 2068 111 4 0 chr6 4512472 4512751 -177902491 + AluSx SINE Alu 16 295 -17 273 230 115 35 chr6 4513148 4513235 -177902007 - L2 LINE L2 -8 3305 3212 373 289 39 27 chr6 4513308 4513571 -177901671 + L2 LINE L2 2711 2977 -336 2554 217 60 19 chr6 4513794 4514357 -177900885 - MLT1E LTR MaLR 0 593 8 239 293 135 30 chr6 4515466 4515599 -177899643 + MIR SINE MIR 21 167 -95 3083 145 25 33 chr6 4515691 4516242 -177899000 + LTR10A LTR ERV1 1 547 -62 2065 173 138 50 chr6 4516662 4517164 -177898078 - LTR10B LTR ERV1 -1 546 1 1911 155 54 57 chr6 4517207 4517593 -177897649 - MLT1B LTR MaLR -5 385 1 1678 175 22 0 chr6 4519033 4519307 -177895935 + AluJb SINE Alu 1 280 -32 189 0 0 0 chr6 4519307 4519328 -177895914 + (CAAT)n Simple_repeat Simple_repeat 4 24 0 1013 191 5 5 chr6 4519543 4519731 -177895511 - MER53 DNA DNA 0 189 2 263 261 142 30 chr6 4519890 4520024 -177895218 - MLT1L LTR MaLR -49 566 418 2533 69 0 0 chr6 4520422 4520725 -177894517 - AluSc SINE Alu -6 303 1 2464 74 0 16 chr6 4520727 4521036 -177894206 - AluY SINE Alu -7 304 1 22 0 0 0 chr6 4521038 4521060 -177894182 + AT_rich Low_complexity Low_complexity 1 22 0 1710 68 42 13 chr6 4521060 4521296 -177893946 - L1MA1 LINE L1 0 6302 6060 229 309 62 0 chr6 4522181 4522262 -177892980 + MIR SINE MIR 45 130 -78 623 231 158 60 chr6 4522262 4522630 -177892612 - MLT1J LTR MaLR 0 511 108 307 253 13 0 chr6 4522782 4522861 -177892381 - L2 LINE L2 0 3313 3234 2212 101 30 0 chr6 4523113 4523409 -177891833 + AluSc SINE Alu 1 305 -4 624 329 43 37 chr6 4523624 4523998 -177891244 + L1ME4a LINE L1 5518 5893 -228 2146 109 0 0 chr6 4524027 4524302 -177890940 - AluSg SINE Alu -34 276 2 255 361 30 15 chr6 4524862 4524995 -177890247 - L2 LINE L2 0 3272 3138 1910 159 3 0 chr6 4525225 4525520 -177889722 - AluJo SINE Alu -16 296 1 437 274 149 23 chr6 4525686 4525901 -177889341 - MIR SINE MIR -1 261 20 319 290 8 73 chr6 4525905 4526029 -177889213 - MIR SINE MIR -84 178 63 1055 200 33 79 chr6 4526562 4526892 -177888350 + L1MA10 LINE L1 6018 6332 -2 1333 197 24 14 chr6 4526911 4527200 -177888042 + L1MB8 LINE L1 5881 6172 -6 388 263 143 6 chr6 4527247 4527422 -177887820 + MARNA DNA Mariner 211 409 -177 466 264 104 42 chr6 4527551 4527744 -177887498 + MIR SINE MIR 58 262 0 191 173 58 19 chr6 4528277 4528329 -177886913 + L2 LINE L2 3207 3260 -12 2675 170 25 48 chr6 4529118 4529678 -177885564 - L1MA10 LINE L1 -1 6333 5787 1212 182 18 1 chr6 4529680 4529985 -177885257 - MER2 DNA MER2_type -1 344 1 1212 124 23 0 chr6 4529989 4530166 -177885076 - L1MA10 LINE L1 -552 5782 5602 2442 155 38 5 chr6 4530170 4530596 -177884646 - L1MB3 LINE L1 -2 6181 5742 420 265 8 17 chr6 4530603 4530720 -177884522 + Charlie8 DNA MER1_type 102 217 -2200 381 321 179 19 chr6 4531266 4531574 -177883668 - L3b LINE CR1 -125 1458 1102 554 222 163 7 chr6 4532104 4532257 -177882985 + MER5A DNA MER1_type 13 189 0 207 318 127 27 chr6 4532448 4532558 -177882684 - L2 LINE L2 -16 3256 3136 367 169 0 0 chr6 4532820 4532879 -177882363 + MER20 DNA MER1_type 159 217 -2 272 61 0 0 chr6 4532926 4532959 -177882283 + MLT1B LTR MaLR 1 33 -357 419 265 48 78 chr6 4532961 4533087 -177882155 + L2 LINE L2 1521 1642 -1672 1133 188 32 37 chr6 4533087 4533305 -177881937 + MER20 DNA MER1_type 1 217 -2 419 265 48 78 chr6 4533305 4533344 -177881898 + L2 LINE L2 1642 1681 -1633 1437 176 131 42 chr6 4533352 4533524 -177881718 + MLT1B LTR MaLR 1 156 -234 189 0 0 0 chr6 4533524 4533545 -177881697 + (TC)n Simple_repeat Simple_repeat 2 22 0 1437 176 131 42 chr6 4533545 4533730 -177881512 + MLT1B LTR MaLR 156 390 0 1491 249 29 31 chr6 4533757 4533813 -177881429 + L1ME1 LINE L1 5742 5797 -369 2008 137 67 25 chr6 4533813 4534171 -177881071 - THE1C LTR MaLR 0 375 3 10189 125 26 38 chr6 4534173 4535768 -177879474 - THE1C-int LTR MaLR 0 1580 4 1719 146 109 34 chr6 4535771 4536120 -177879122 - THE1C LTR MaLR 0 375 1 1491 249 29 31 chr6 4536120 4536477 -177878765 + L1ME1 LINE L1 5800 6161 -5 1201 290 172 18 chr6 4536519 4537359 -177877883 + L2 LINE L2 1706 2686 -628 1879 186 93 11 chr6 4537359 4537725 -177877517 + MSTD LTR MaLR 1 396 0 1201 290 172 18 chr6 4537725 4537757 -177877485 + L2 LINE L2 2686 2712 -602 2229 95 3 0 chr6 4538078 4538386 -177876856 + AluSq SINE Alu 1 309 0 236 274 59 0 chr6 4540428 4540530 -177874712 + L1ME LINE L1 5692 5799 -363 1190 128 12 0 chr6 4540689 4540861 -177874381 + AluSg/x SINE Alu 139 312 0 282 198 244 0 chr6 4541024 4541110 -177874132 + HsTC2 DNA Tc2 28 134 -1764 * 556 167 49 42 chr6 4541109 4541253 -177873989 + HsTC2 DNA Tc2 1650 1794 -104 549 243 126 14 chr6 4541254 4541519 -177873723 + L2 LINE L2 2702 3006 -307 1127 257 119 48 chr6 4541679 4542309 -177872933 + L1MC4 LINE L1 7367 8041 -1 494 296 21 0 chr6 4544370 4544512 -177870730 + MIR SINE MIR 80 224 -38 552 201 79 126 chr6 4544841 4545055 -177870187 + MIR SINE MIR 51 254 -8 2120 58 91 4 chr6 4546358 4546633 -177868609 - AluY SINE Alu -12 299 1 3590 54 16 16 chr6 4547605 4548049 -177867193 + L1PA8 LINE L1 5726 6169 -3 495 317 0 12 chr6 4548147 4548308 -177866934 - MIR SINE MIR -6 256 98 229 325 102 15 chr6 4549225 4549422 -177865820 + L2 LINE L2 318 531 -2783 327 304 53 70 chr6 4549501 4549672 -177865570 - MER5B DNA MER1_type -7 171 4 180 358 56 59 chr6 4549678 4550002 -177865240 + L2 LINE L2 864 1186 -2128 398 233 0 0 chr6 4550149 4550222 -177865020 + Tigger3(Golem) DNA MER2_type 3 75 -2954 651 196 0 0 chr6 4550222 4550329 -177864913 - FLAM_C SINE Alu -35 108 2 492 217 57 23 chr6 4550331 4550506 -177864736 + L1ME1 LINE L1 4279 4459 -1687 * 1401 226 72 24 chr6 4550492 4550638 -177864604 + L1ME1 LINE L1 5643 5781 -385 2355 150 25 34 chr6 4550638 4551045 -177864197 - MER57A LTR ERV1 0 403 1 1401 226 72 24 chr6 4551045 4551313 -177863929 + L1ME1 LINE L1 5781 6077 -89 1557 201 43 23 chr6 4551345 4551743 -177863499 + MER97b DNA MER1_type? 454 859 -194 389 185 46 28 chr6 4551975 4552083 -177863159 + L1 LINE L1 4884 4993 -1153 373 289 50 28 chr6 4552110 4552290 -177862952 + L1MB7 LINE L1 24 207 -6652 230 217 14 14 chr6 4552395 4552464 -177862778 + (TA)n Simple_repeat Simple_repeat 1 69 0 1848 142 32 98 chr6 4552464 4552694 -177862548 + Tigger2 DNA MER2_type 1 245 -2473 2026 120 4 0 chr6 4552694 4552969 -177862273 - AluSx SINE Alu -32 280 5 1848 142 32 98 chr6 4552969 4553205 -177862037 + Tigger2 DNA MER2_type 245 2713 -5 325 345 36 16 chr6 4553226 4553420 -177861822 + L1M4b LINE L1 2663 2860 -4278 802 181 6 19 chr6 4553429 4553589 -177861653 + L1MB7 LINE L1 328 485 -6370 * 14028 153 38 10 chr6 4553582 4555848 -177859394 + L1M1 LINE L1 1361 3752 -3813 1768 152 0 4 chr6 4555848 4556132 -177859110 + AluSx SINE Alu 28 310 0 14028 153 38 10 chr6 4556132 4557243 -177857999 + L1M1 LINE L1 3752 4831 -2734 1311 162 27 96 chr6 4557236 4557481 -177857761 + L1MB7 LINE L1 1210 1428 -5427 * 2349 84 3 0 chr6 4557481 4557777 -177857465 - AluY SINE Alu -14 297 1 1311 162 27 96 chr6 4557777 4557864 -177857378 + L1MB7 LINE L1 1428 1519 -5336 2036 204 42 8 chr6 4559093 4559569 -177855673 + L1MB7 LINE L1 1501 1992 -4863 3455 199 60 12 chr6 4559583 4560366 -177854876 - MER21B LTR ERV1 0 863 2 1441 235 48 29 chr6 4560367 4560843 -177854399 + L1MB7 LINE L1 1998 2482 -4477 1246 276 10 17 chr6 4561231 4561713 -177853529 + L1MB7 LINE L1 2581 3059 -3900 5723 127 41 7 chr6 4561713 4562830 -177852412 + L1PB3 LINE L1 5006 6154 0 1633 158 18 40 chr6 4562845 4563123 -177852119 + AluSx SINE Alu 1 272 -40 221 0 0 33 chr6 4563139 4563169 -177852073 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 585 211 62 23 chr6 4563320 4563448 -177851794 + AluJo SINE Alu 3 135 -177 9434 199 52 32 chr6 4563462 4564984 -177850258 + L1MB7 LINE L1 3045 4535 -2460 203 61 30 0 chr6 4564984 4565017 -177850225 + (TTTA)n Simple_repeat Simple_repeat 2 35 0 1662 189 4 0 chr6 4565019 4565299 -177849943 - AluJb SINE Alu -31 281 1 9434 199 52 32 chr6 4565299 4565689 -177849553 + L1MB7 LINE L1 4535 4916 -2079 237 65 0 0 chr6 4565689 4565720 -177849522 + (CA)n Simple_repeat Simple_repeat 2 32 0 9434 199 52 32 chr6 4565720 4567449 -177847793 + L1MB7 LINE L1 4916 6858 -137 621 72 0 0 chr6 4567449 4567532 -177847710 + (TG)n Simple_repeat Simple_repeat 1 83 0 9434 199 52 32 chr6 4567532 4567654 -177847588 + L1MB7 LINE L1 6858 6976 -19 6049 205 36 56 chr6 4567704 4568466 -177846776 + L1MA8 LINE L1 3238 4014 -2277 186 43 0 0 chr6 4568466 4568489 -177846753 + (GAAAA)n Simple_repeat Simple_repeat 3 25 0 2264 110 0 0 chr6 4568489 4568788 -177846454 - AluSx SINE Alu -13 299 1 6049 205 36 56 chr6 4568788 4569092 -177846150 + L1MA8 LINE L1 4013 4322 -1969 2453 146 50 8 chr6 4569092 4569470 -177845772 + MSTD LTR MaLR 1 394 -2 6049 205 36 56 chr6 4569470 4571613 -177843629 + L1MA8 LINE L1 4322 6290 -1 2362 212 47 77 chr6 4571617 4572477 -177842765 + L1MD3 LINE L1 4610 5439 -727 312 210 200 10 chr6 4572481 4572581 -177842661 + FLAM_A SINE Alu 6 124 -9 3066 247 117 29 chr6 4572583 4573848 -177841394 + L1MD3 LINE L1 5435 6811 -1184 801 228 107 38 chr6 4573858 4574147 -177841095 + L2 LINE L2 3005 3313 0 696 242 82 6 chr6 4574301 4574483 -177840759 - MER91A DNA MER1_type 0 196 1 4192 152 31 11 chr6 4575713 4576457 -177838785 + L1MB3 LINE L1 5289 6047 -136 625 288 79 46 chr6 4576457 4576888 -177838354 + L1ME4a LINE L1 5526 5970 -151 338 221 58 0 chr6 4576901 4576987 -177838255 + L1ME4a LINE L1 6031 6121 0 1026 140 0 0 chr6 4577315 4577336 -177837906 + (GGAA)n Simple_repeat Simple_repeat 1 200 0 1026 140 0 0 chr6 4577336 4577515 -177837727 + (GGAA)n Simple_repeat Simple_repeat 1 179 0 233 325 79 0 chr6 4578988 4579102 -177836140 + L2 LINE L2 2916 3038 -234 361 307 62 20 chr6 4579192 4579350 -177835892 + MIR SINE MIR 30 191 -66 250 283 97 21 chr6 4579559 4579704 -177835538 - MER5B DNA MER1_type -2 176 21 204 229 33 33 chr6 4579724 4579785 -177835457 + CT-rich Low_complexity Low_complexity 6 66 0 242 289 29 29 chr6 4580409 4580513 -177834729 + L2 LINE L2 2935 3038 -234 1905 108 52 3 chr6 4582258 4582544 -177832698 + AluSx SINE Alu 1 300 -12 202 154 0 26 chr6 4583133 4583172 -177832070 - L2 LINE L2 -79 3234 3197 746 142 14 7 chr6 4583422 4583563 -177831679 + L1MA8 LINE L1 6146 6287 -4 1679 130 19 52 chr6 4583571 4583878 -177831364 + AluSx SINE Alu 1 297 -15 1660 76 23 2 chr6 4584458 4584837 -177830405 - MLT2A2 LTR ERVL 0 453 1 350 254 0 18 chr6 4586172 4586337 -177828905 + (GTATG)n Simple_repeat Simple_repeat 3 164 0 453 239 150 60 chr6 4586536 4586703 -177828539 - MIR SINE MIR -31 231 50 450 311 0 16 chr6 4587432 4587615 -177827627 + (CA)n Simple_repeat Simple_repeat 1 180 0 275 275 0 13 chr6 4587808 4587957 -177827285 + (GTATG)n Simple_repeat Simple_repeat 1 147 0 267 294 0 0 chr6 4589066 4589134 -177826108 + (GCATG)n Simple_repeat Simple_repeat 5 72 0 364 231 135 52 chr6 4589379 4589574 -177825668 - MIR SINE MIR -29 233 16 731 272 76 71 chr6 4589840 4590248 -177824994 - MLT1J LTR MaLR -78 433 24 2577 120 10 10 chr6 4590722 4591106 -177824136 + MLT1B LTR MaLR 7 390 0 1515 158 93 0 chr6 4592265 4592524 -177822718 + AluJo SINE Alu 1 283 -19 1960 117 7 3 chr6 4592561 4592859 -177822383 + AluSc SINE Alu 1 299 -10 239 333 167 0 chr6 4593314 4593434 -177821808 + MIR3 SINE MIR 51 190 -18 978 238 19 0 chr6 4594308 4594514 -177820728 - MER63A DNA MER1_type 0 210 1 190 267 0 0 chr6 4595450 4595495 -177819747 + L2 LINE L2 3269 3313 0 32 0 0 0 chr6 4596985 4597017 -177818225 + AT_rich Low_complexity Low_complexity 1 32 0 541 256 168 57 chr6 4597396 4597693 -177817549 - L1MDa LINE L1 -3222 3318 2989 267 274 79 66 chr6 4597730 4597838 -177817404 - L1MDa LINE L1 -3636 2904 2799 2035 129 3 0 chr6 4597838 4598147 -177817095 - AluSx SINE Alu -2 310 1 267 274 79 66 chr6 4598147 4598341 -177816901 - L1MDa LINE L1 -3741 2799 2598 1855 141 30 3 chr6 4598355 4598659 -177816583 + AluJb SINE Alu 1 312 0 336 230 71 26 chr6 4598747 4598860 -177816382 - L1MDa LINE L1 -3982 2558 2441 448 295 76 55 chr6 4599200 4599658 -177815584 - HAL1 LINE L1 -742 1765 1298 286 171 0 0 chr6 4599667 4599708 -177815534 - Tigger5 DNA MER2_type 0 2323 2283 250 233 0 0 chr6 4599716 4599759 -177815483 + Tigger5 DNA MER2_type 2278 2320 -3 * 314 247 0 27 chr6 4599759 4599828 -177815414 - Tigger5 DNA MER2_type -2256 67 1 317 300 66 37 chr6 4599869 4600112 -177815130 - L1MDa LINE L1 -4975 1555 1306 1675 136 0 8 chr6 4600298 4600555 -177814687 + AluSx SINE Alu 43 297 -15 3033 25 3 0 chr6 4600555 4600912 -177814330 - L1PA3 LINE L1 -1005 5141 4784 7922 22 0 0 chr6 4600912 4601984 -177813258 + L1PA3 LINE L1 5141 6209 0 333 157 49 10 chr6 4602020 4602122 -177813120 + CT-rich Low_complexity Low_complexity 1 106 0 834 295 66 0 chr6 4603064 4603305 -177811937 + MIR SINE MIR 1 257 -5 1683 154 4 7 chr6 4603324 4603603 -177811639 + AluJb SINE Alu 1 278 -34 446 0 19 0 chr6 4603606 4603660 -177811582 + (TTAAA)n Simple_repeat Simple_repeat 1 55 0 238 287 169 75 chr6 4603682 4604292 -177810950 + L2 LINE L2 2164 2830 -484 404 335 85 48 chr6 4604337 4604630 -177810612 + L2 LINE L2 2946 3249 -23 451 262 56 76 chr6 4604854 4605030 -177810212 + L1MC/D LINE L1 5196 5374 -1024 1539 185 3 27 chr6 4605030 4605327 -177809915 - AluJb SINE Alu -22 290 1 451 262 56 76 chr6 4605327 4605594 -177809648 + L1MC/D LINE L1 5374 5622 -776 400 255 80 92 chr6 4605905 4606156 -177809086 + MLT1L LTR MaLR 10 257 -358 2744 216 174 55 chr6 4606207 4607153 -177808089 + L1MC4a LINE L1 6442 7500 -308 2056 121 0 0 chr6 4607207 4607515 -177807727 + AluSx SINE Alu 1 308 0 365 280 9 9 chr6 4607547 4607654 -177807588 + L1MC4 LINE L1 7795 7901 -141 291 240 158 23 chr6 4607900 4608071 -177807171 + MLT1K LTR MaLR 395 588 0 2706 19 0 6 chr6 4608174 4608490 -177806752 + AluYb8 SINE Alu 1 314 -4 528 209 34 155 chr6 4608954 4608990 -177806252 + L1MC4 LINE L1 6509 6548 -1494 2148 93 0 10 chr6 4608990 4609281 -177805961 + AluSx SINE Alu 1 288 -24 528 209 34 155 chr6 4609281 4609541 -177805701 + L1MC4 LINE L1 6548 6769 -1273 299 284 101 47 chr6 4609847 4609995 -177805247 + L2 LINE L2 3109 3264 -8 633 192 0 48 chr6 4610628 4610753 -177804489 - MLT1E2 LTR MaLR -3 623 505 1434 164 34 74 chr6 4610753 4610848 -177804394 - AluJo SINE Alu 0 312 215 4610 104 30 47 chr6 4610848 4611551 -177803691 + LTR8 LTR ERV1 1 691 0 1434 164 34 74 chr6 4611551 4611778 -177803464 - AluJo SINE Alu -97 215 3 1593 240 109 27 chr6 4611780 4612255 -177802987 - MLT1E2 LTR MaLR -112 514 1 791 189 0 0 chr6 4612573 4612705 -177802537 + FLAM_C SINE Alu 2 133 0 237 247 148 0 chr6 4613186 4613267 -177801975 - L2 LINE L2 -36 3277 3185 1811 179 43 93 chr6 4614549 4615034 -177800208 - MLT2C2 LTR ERVL -3 461 1 389 294 62 20 chr6 4616327 4616473 -177798769 - L2 LINE L2 0 3272 3121 369 62 0 0 chr6 4616485 4616533 -177798709 + (ATG)n Simple_repeat Simple_repeat 3 50 0 736 207 0 0 chr6 4618708 4618843 -177796399 + FLAM_C SINE Alu 2 136 -7 573 306 120 0 chr6 4618857 4619073 -177796169 + MIR SINE MIR 20 261 -1 507 270 199 5 chr6 4620487 4620683 -177794559 + MIR SINE MIR 2 235 -27 * 788 226 37 26 chr6 4620681 4620871 -177794371 + MIR SINE MIR 68 259 -3 321 179 0 0 chr6 4620876 4620960 -177794282 + (ATG)n Simple_repeat Simple_repeat 1 84 0 1191 213 49 4 chr6 4620981 4621225 -177794017 - LTR8 LTR ERV1 -436 255 1 377 216 14 0 chr6 4621227 4621301 -177793941 + MER5A DNA MER1_type 16 90 -99 851 249 117 42 chr6 4622422 4622824 -177792418 - L1ME3A LINE L1 -130 6032 5601 5641 101 15 16 chr6 4622831 4623494 -177791748 - L1PB1 LINE L1 0 6151 5488 1972 129 3 24 chr6 4623494 4623813 -177791429 - AluSx SINE Alu 0 312 1 5641 101 15 16 chr6 4623813 4624009 -177791233 - L1PB1 LINE L1 -663 5488 5293 1931 67 0 0 chr6 4624022 4624260 -177790982 - LTR17 LTR ERV1 -454 326 89 8320 197 13 38 chr6 4624262 4626090 -177789152 - L1PB1 LINE L1 -852 5294 3516 2378 93 0 0 chr6 4626090 4626390 -177788852 - AluY SINE Alu -11 300 1 8320 197 13 38 chr6 4626390 4626514 -177788728 - L1PB1 LINE L1 -2630 3516 3390 589 255 52 21 chr6 4626626 4626949 -177788293 - L1ME3A LINE L1 -641 5525 5195 2268 111 0 7 chr6 4627649 4627955 -177787287 - AluSx SINE Alu -8 304 1 3067 159 46 9 chr6 4627959 4628543 -177786699 - L1MB3 LINE L1 -1 6182 5577 443 314 7 0 chr6 4628686 4628823 -177786419 - MIR3 SINE MIR -25 183 46 333 0 0 0 chr6 4629221 4629258 -177785984 + (CA)n Simple_repeat Simple_repeat 2 38 0 188 184 26 0 chr6 4629932 4629970 -177785272 + MIR SINE MIR 108 146 -62 301 320 153 0 chr6 4630893 4631043 -177784199 - MER5B DNA MER1_type -5 173 1 191 219 41 73 chr6 4631414 4631537 -177783705 - MIR SINE MIR -50 212 94 431 209 12 0 chr6 4631699 4631785 -177783457 - MER81 DNA DNA -8 106 20 293 188 29 14 chr6 4632211 4632280 -177782962 - Charlie4a DNA MER1_type 0 508 439 436 167 21 0 chr6 4632280 4632376 -177782866 + CT-rich Low_complexity Low_complexity 2 99 0 1894 183 7 0 chr6 4632386 4632692 -177782550 - AluJb SINE Alu -4 308 1 1552 194 140 8 chr6 4632692 4633077 -177782165 - Charlie4a DNA MER1_type -1522 439 1 1574 234 47 20 chr6 4633203 4633645 -177781597 + MLT1C LTR MaLR 1 654 0 187 364 0 0 chr6 4633977 4634065 -177781177 - MIR3 SINE MIR -7 201 114 270 233 78 33 chr6 4634534 4634624 -177780618 - LTR16A1 LTR ERVL -30 427 334 302 274 0 0 chr6 4634730 4634803 -177780439 - MER63 DNA MER1_type -11 1049 977 461 147 0 40 chr6 4634805 4634880 -177780362 - MER63 DNA MER1_type -86 750 679 267 288 0 0 chr6 4635955 4636035 -177779207 + MER116 DNA Mariner 1 80 0 257 330 93 8 chr6 4636174 4636292 -177778950 + MIR3 SINE MIR 12 139 -69 1093 148 44 31 chr6 4637455 4637668 -177777574 + L1MB3 LINE L1 5854 6100 -71 1610 209 3 3 chr6 4637668 4637965 -177777277 + AluJo SINE Alu 1 297 -15 1093 148 44 31 chr6 4637965 4638036 -177777206 + L1MB3 LINE L1 6100 6169 -2 234 333 0 0 chr6 4639644 4639719 -177775523 + L2 LINE L2 3197 3271 -1 306 0 0 0 chr6 4640237 4640271 -177774971 + (CA)n Simple_repeat Simple_repeat 2 35 0 647 56 0 0 chr6 4640390 4640480 -177774762 + Alu SINE Alu 220 309 0 651 228 133 31 chr6 4641996 4642320 -177772922 + LTR33A LTR ERVL 159 515 -8 516 178 0 0 chr6 4642577 4642667 -177772575 - LTR12 LTR ERV1 0 714 625 304 185 29 27 chr6 4642667 4642769 -177772473 - LTR30 LTR ERV1 -92 614 378 269 145 0 65 chr6 4642769 4642831 -177772411 - LTR12 LTR ERV1 -429 285 228 972 162 96 21 chr6 4642888 4643111 -177772131 - LTR12 LTR ERV1 -480 1683 55 269 231 0 0 chr6 4643111 4643163 -177772079 - LTR30 LTR ERV1 -670 52 1 2352 106 0 0 chr6 4643730 4644031 -177771211 - AluSq SINE Alu -12 301 1 349 141 31 0 chr6 4644331 4644395 -177770847 + Alu SINE Alu 235 300 -2 2498 154 55 20 chr6 4644522 4644962 -177770280 - MLT1C LTR MaLR 0 467 13 1679 208 28 48 chr6 4644980 4645374 -177769868 - MLT1C-int LTR MaLR -14 1357 972 2352 108 95 63 chr6 4645899 4646362 -177768880 + L1MA7 LINE L1 5813 6290 -1 1593 159 116 0 chr6 4646372 4646630 -177768612 + AluJb SINE Alu 1 288 -24 282 327 68 19 chr6 4646849 4647011 -177768231 + MER5A DNA MER1_type 20 189 0 426 319 44 22 chr6 4647016 4647198 -177768044 + MIR SINE MIR 18 203 -59 263 278 41 10 chr6 4647325 4647422 -177767820 + MIR SINE MIR 153 252 -10 2256 97 10 3 chr6 4647804 4648102 -177767140 + AluSc SINE Alu 1 300 -9 1949 184 91 30 chr6 4648652 4649114 -177766128 - LTR2B LTR ERV1 0 490 1 232 407 42 0 chr6 4649166 4649284 -177765958 - L2 LINE L2 -27 3245 3123 295 231 51 0 chr6 4649335 4649413 -177765829 + MER58B DNA MER1_type 252 333 -8 742 157 100 7 chr6 4649648 4649788 -177765454 - LTR32 LTR ERVL 0 471 319 1956 181 29 14 chr6 4649790 4650139 -177765103 - LTR32 LTR ERVL -103 368 15 1583 190 74 3 chr6 4650139 4650503 -177764739 + L1MB2 LINE L1 5782 6171 0 764 330 14 17 chr6 4650832 4651178 -177764064 + L2 LINE L2 1973 2317 -997 921 281 118 53 chr6 4651195 4651644 -177763598 - MLT1J LTR MaLR -33 478 1 352 328 82 30 chr6 4651644 4651973 -177763269 + L2 LINE L2 2315 2660 -654 452 287 42 7 chr6 4652032 4652175 -177763067 + L2 LINE L2 2553 2700 -614 2041 142 3 0 chr6 4652225 4652528 -177762714 + AluSx SINE Alu 1 304 -8 200 253 33 80 chr6 4652672 4652822 -177762420 + L2 LINE L2 2949 3091 -181 193 250 52 73 chr6 4652969 4653065 -177762177 + L2 LINE L2 3220 3313 0 708 138 7 51 chr6 4654549 4654687 -177760555 - FRAM SINE Alu -4 172 41 560 285 108 25 chr6 4654997 4655274 -177759968 + L1MC4a LINE L1 5569 5868 -1940 868 123 23 0 chr6 4655293 4655423 -177759819 - FLAM_C SINE Alu 0 133 1 1250 202 96 58 chr6 4655502 4656191 -177759051 - L1ME1 LINE L1 -9 6157 5496 2276 123 0 0 chr6 4656191 4656500 -177758742 - AluSg SINE Alu -1 309 1 2161 121 0 25 chr6 4656500 4656815 -177758427 - AluSx SINE Alu -4 308 2 1250 202 96 58 chr6 4656815 4656894 -177758348 - L1ME1 LINE L1 -670 5496 5421 1852 169 0 7 chr6 4656894 4657195 -177758047 - AluSx SINE Alu -13 299 1 1250 202 96 58 chr6 4657195 4657523 -177757719 - L1ME1 LINE L1 -745 5421 4853 832 164 42 61 chr6 4657916 4658031 -177757211 - AluJo SINE Alu -17 295 182 4999 71 3 2 chr6 4658031 4658663 -177756579 - LTR10E LTR ERV1 0 633 1 832 164 42 61 chr6 4658663 4658712 -177756530 - AluJo SINE Alu -130 182 134 846 150 0 0 chr6 4658712 4658845 -177756397 - AluJo SINE Alu -169 133 1 761 246 42 17 chr6 4659640 4659876 -177755366 - MIR SINE MIR -3 259 18 2148 107 0 57 chr6 4659978 4660295 -177754947 - AluSx SINE Alu -13 299 1 265 376 6 25 chr6 4660532 4660694 -177754548 + MIR SINE MIR 75 233 -29 400 263 105 70 chr6 4660785 4661102 -177754140 + L1MC4a LINE L1 4755 5095 -1051 1941 102 45 0 chr6 4661102 4661392 -177753850 + AluSx SINE Alu 7 308 0 400 263 105 70 chr6 4661392 4661529 -177753713 + L1MC4a LINE L1 5095 5226 -920 374 242 89 8 chr6 4661575 4661699 -177753543 - L2 LINE L2 0 3313 3180 1878 132 11 0 chr6 4661883 4662148 -177753094 + AluSx SINE Alu 7 274 -38 21 0 0 0 chr6 4662155 4662176 -177753066 + AT_rich Low_complexity Low_complexity 1 21 0 1496 183 11 21 chr6 4662247 4662531 -177752711 + AluJo SINE Alu 1 281 -31 2603 74 0 0 chr6 4662543 4662854 -177752388 - AluY SINE Alu 0 311 1 936 304 41 39 chr6 4662874 4663314 -177751928 + L1MC4a LINE L1 5466 5906 -1902 503 216 122 0 chr6 4663314 4663462 -177751780 + MER63C DNA MER1_type 1 166 -764 482 224 46 33 chr6 4663563 4663715 -177751527 - MER63C DNA MER1_type -533 397 244 * 1448 188 20 14 chr6 4663599 4663875 -177751367 + MER63C DNA MER1_type 244 521 -409 1068 213 62 0 chr6 4663875 4664086 -177751156 + MER58A DNA MER1_type 1 224 0 1633 230 65 0 chr6 4664086 4664468 -177750774 + MER63C DNA MER1_type 518 924 -6 271 285 98 16 chr6 4665317 4665440 -177749802 - LTR16C LTR ERVL 0 491 359 1060 212 205 40 chr6 4665459 4665883 -177749359 - MLT1G LTR MaLR 0 590 97 1193 178 57 13 chr6 4665975 4666205 -177749037 - MLT1F1 LTR MaLR -299 268 29 204 40 0 0 chr6 4666222 4666247 -177748995 + (TG)n Simple_repeat Simple_repeat 2 26 0 1100 264 190 26 chr6 4666267 4666364 -177748878 - L1ME3A LINE L1 -232 5938 5858 2516 123 21 3 chr6 4666364 4666747 -177748495 - MLT1B LTR MaLR 0 390 1 1100 264 190 26 chr6 4666747 4667231 -177748011 - L1ME3A LINE L1 -312 5858 5265 2247 124 0 0 chr6 4667470 4667769 -177747473 + AluSx SINE Alu 1 299 -13 975 161 37 0 chr6 4668836 4668998 -177746244 - MER20 DNA MER1_type 0 219 52 2538 162 5 0 chr6 4669054 4669455 -177745787 - MER57A LTR ERV1 0 403 1 15608 124 30 3 chr6 4669510 4671860 -177743382 - Tigger1 DNA MER2_type 0 2418 5 347 200 122 0 chr6 4671915 4672005 -177743237 + U13 snRNA snRNA 1 101 -3 1766 88 0 0 chr6 4672595 4672811 -177742431 + AluSg/x SINE Alu 89 304 -8 205 285 49 57 chr6 4674085 4674208 -177741034 + MER5B DNA MER1_type 2 123 -55 180 212 0 0 chr6 4674563 4674596 -177740646 + L2 LINE L2 3230 3262 -10 2406 95 0 0 chr6 4674615 4674911 -177740331 - AluSg SINE Alu -14 296 1 1990 118 0 24 chr6 4675149 4675437 -177739805 + AluSx SINE Alu 22 302 -10 252 232 85 67 chr6 4676558 4676722 -177738520 - L1ME4a LINE L1 -2 6119 5953 524 229 97 0 chr6 4677000 4677175 -177738067 - MIR SINE MIR 0 262 71 538 281 113 30 chr6 4677788 4678194 -177737048 - HAL1 LINE L1 0 2507 2068 * 6821 223 69 24 chr6 4678189 4680817 -177734425 + L1ME1 LINE L1 3153 5901 -265 1693 154 78 7 chr6 4680826 4681132 -177734110 + MER2 DNA MER2_type 17 344 -1 713 247 5 73 chr6 4681136 4681337 -177733905 + L1ME1 LINE L1 5905 6091 -75 941 220 18 23 chr6 4681337 4681555 -177733687 - MER20 DNA MER1_type -1 218 2 713 247 5 73 chr6 4681555 4681572 -177733670 + L1ME1 LINE L1 6091 6108 -58 596 177 21 0 chr6 4681576 4681672 -177733570 + AluJ/FLAM SINE Alu 3 100 -212 39 50 0 0 chr6 4681672 4681732 -177733510 + AT_rich Low_complexity Low_complexity 1 60 0 1712 158 21 7 chr6 4681732 4682016 -177733226 - AluJb SINE Alu -24 288 1 2148 124 3 7 chr6 4682053 4682352 -177732890 + AluSx SINE Alu 1 298 -14 684 293 226 44 chr6 4682550 4683482 -177731760 - HAL1 LINE L1 -931 1576 475 204 125 42 42 chr6 4684668 4684740 -177730502 + (TAA)n Simple_repeat Simple_repeat 1 72 0 1894 261 92 53 chr6 4684790 4685012 -177730230 + L1M4 LINE L1 2210 2422 -3724 2085 121 14 3 chr6 4685012 4685301 -177729941 + AluSx SINE Alu 1 292 -20 1894 261 92 53 chr6 4685301 4686458 -177728784 + L1M4 LINE L1 2422 3643 -2503 1027 236 159 26 chr6 4686480 4687209 -177728033 - L2 LINE L2 -73 3240 2410 234 215 15 15 chr6 4687228 4687293 -177727949 + GA-rich Low_complexity Low_complexity 2 66 0 4295 27 0 0 chr6 4687505 4687994 -177727248 - L1PA4 LINE L1 -4 6151 5663 838 108 58 0 chr6 4688000 4688120 -177727122 - FLAM_C SINE Alu -10 133 7 361 268 49 0 chr6 4688209 4688332 -177726910 - MIR3 SINE MIR -69 139 11 1317 153 77 32 chr6 4689954 4690202 -177725040 + AluJo SINE Alu 39 297 -15 1576 134 0 17 chr6 4690262 4690493 -177724749 + AluJb SINE Alu 17 243 -69 270 81 0 0 chr6 4690504 4690541 -177724701 + (TAAA)n Simple_repeat Simple_repeat 1 37 0 1005 163 0 0 chr6 4692021 4692174 -177723068 + FRAM SINE Alu 1 153 -13 671 221 21 106 chr6 4692349 4692680 -177722562 + MLT1J1 LTR MaLR 35 337 -109 294 293 125 66 chr6 4694159 4694583 -177720659 - MLT1K LTR MaLR 0 588 140 2051 141 0 51 chr6 4695146 4695501 -177719741 + MER1B DNA MER1_type 1 337 0 2074 149 74 3 chr6 4695570 4695933 -177719309 + MLT1B LTR MaLR 1 389 -1 209 304 67 38 chr6 4697362 4697474 -177717768 + MIR SINE MIR 7 122 -86 473 232 134 73 chr6 4697524 4697639 -177717603 + MIR SINE MIR 2 109 -153 2422 69 3 7 chr6 4697639 4697945 -177717297 - AluY SINE Alu -6 305 1 473 232 134 73 chr6 4697945 4698075 -177717167 + MIR SINE MIR 109 262 0 260 320 8 25 chr6 4698149 4698271 -177716971 - MLT1K LTR MaLR 0 588 469 198 171 0 0 chr6 4698586 4698627 -177716615 + (CA)n Simple_repeat Simple_repeat 2 42 0 259 225 45 0 chr6 4699218 4699307 -177715935 + MIR SINE MIR 93 185 -77 2025 127 13 30 chr6 4699365 4699664 -177715578 + AluSx SINE Alu 1 294 -18 643 205 66 0 chr6 4699852 4700018 -177715224 - MIR SINE MIR -57 205 29 274 267 12 12 chr6 4701372 4701458 -177713784 + GA-rich Low_complexity Low_complexity 2 87 0 490 286 105 33 chr6 4701928 4702204 -177713038 - LTR16B LTR ERVL 0 464 169 320 266 115 9 chr6 4703004 4703117 -177712125 + MER96 DNA MER1_type? 1 125 -50 206 205 0 0 chr6 4704083 4704122 -177711120 + G-rich Low_complexity Low_complexity 1 39 0 476 263 21 21 chr6 4704181 4704367 -177710875 - MER5A DNA MER1_type -3 186 1 469 299 91 15 chr6 4704598 4704795 -177710447 + MIR SINE MIR 48 259 -3 704 258 154 75 chr6 4704820 4704891 -177710351 - MLT1F1 LTR MaLR 0 590 526 1720 174 7 17 chr6 4704891 4705189 -177710053 + AluJo SINE Alu 6 300 -12 704 258 154 75 chr6 4705189 4705664 -177709578 - MLT1F1 LTR MaLR -64 526 1 1106 138 39 86 chr6 4706281 4706513 -177708729 - AluJo SINE Alu -7 305 85 1826 155 32 45 chr6 4706709 4707089 -177708153 + THE1C LTR MaLR 1 375 0 1028 203 33 5 chr6 4707503 4707715 -177707527 + MER20 DNA MER1_type 1 218 -1 2200 101 0 3 chr6 4708384 4708670 -177706572 - AluSx SINE Alu -27 285 1 453 228 82 78 chr6 4708893 4709099 -177706143 - L1MC5 LINE L1 -74 7887 7681 2199 120 0 0 chr6 4709100 4709399 -177705843 + AluSx SINE Alu 1 299 -13 290 339 51 8 chr6 4710433 4710551 -177704691 + MIR SINE MIR 79 201 -61 * 444 311 179 16 chr6 4710549 4710912 -177704330 - L2 LINE L2 0 3313 2892 2202 125 110 15 chr6 4710943 4711334 -177703908 + MSTA LTR MaLR 1 428 0 1200 319 76 17 chr6 4711430 4712072 -177703170 - L2 LINE L2 -616 2698 2019 675 142 0 0 chr6 4712072 4712192 -177703050 + (GAATG)n Simple_repeat Simple_repeat 3 122 0 424 306 188 3 chr6 4712197 4712533 -177702709 - L2 LINE L2 -1304 2010 1613 301 242 57 16 chr6 4713150 4713274 -177701968 - HAL1b LINE L1 -7 1341 1213 382 164 0 0 chr6 4713671 4713726 -177701516 + AluJ/FLAM SINE Alu 19 73 -229 820 29 29 0 chr6 4713726 4713830 -177701412 - L1PA7 LINE L1 -100 6054 5948 1622 243 102 67 chr6 4713837 4713866 -177701376 + HAL1 LINE L1 114 141 -2366 2195 122 3 0 chr6 4713866 4714160 -177701082 - AluSx SINE Alu -17 295 1 1622 243 102 67 chr6 4714160 4714695 -177700547 + HAL1 LINE L1 141 656 -1851 1590 201 7 13 chr6 4714695 4714994 -177700248 + AluJo SINE Alu 1 297 -15 2241 99 0 43 chr6 4714996 4715320 -177699922 + AluSg SINE Alu 1 310 0 1622 243 102 67 chr6 4715320 4715487 -177699755 + HAL1 LINE L1 656 875 -1632 384 231 93 9 chr6 4715487 4715595 -177699647 + HsTC2 DNA Tc2 1 117 -1781 260 159 45 0 chr6 4715613 4715657 -177699585 + HsTC2 DNA Tc2 1245 1290 -608 1300 239 267 33 chr6 4715682 4716980 -177698262 + HAL1 LINE L1 874 2507 0 383 168 8 143 chr6 4717057 4717176 -177698066 - MER2 DNA MER2_type -1 344 242 1649 128 42 19 chr6 4717178 4717443 -177697799 + AluSx SINE Alu 35 305 -7 291 127 0 2 chr6 4717661 4717702 -177697540 - MSTA LTR MaLR 0 428 386 2331 102 3 0 chr6 4717702 4718005 -177697237 + AluSx SINE Alu 1 304 -8 27 29 0 0 chr6 4718421 4718455 -177696787 + AT_rich Low_complexity Low_complexity 1 34 0 236 299 0 0 chr6 4719389 4719456 -177695786 + (CTTA)n Simple_repeat Simple_repeat 3 69 0 21 0 0 0 chr6 4719768 4719789 -177695453 + AT_rich Low_complexity Low_complexity 1 21 0 27 29 0 0 chr6 4722143 4722177 -177693065 + AT_rich Low_complexity Low_complexity 1 34 0 24 32 0 0 chr6 4723258 4723289 -177691953 + AT_rich Low_complexity Low_complexity 1 31 0 227 79 26 0 chr6 4723292 4723330 -177691912 + (TA)n Simple_repeat Simple_repeat 1 39 0 198 0 0 0 chr6 4724365 4724387 -177690855 + (A)n Simple_repeat Simple_repeat 1 22 0 2035 139 0 16 chr6 4724407 4724717 -177690525 - AluSx SINE Alu -7 305 1 1844 114 158 24 chr6 4724718 4725059 -177690183 - MSTA LTR MaLR -40 388 2 218 324 88 0 chr6 4725151 4725321 -177689921 + L2 LINE L2 1859 2043 -1271 1979 182 14 0 chr6 4725511 4725868 -177689374 - L1PB4 LINE L1 -1 6155 5794 284 271 42 42 chr6 4726069 4726213 -177689029 + L2 LINE L2 3084 3227 -86 418 297 156 52 chr6 4726299 4726770 -177688472 + HAL1 LINE L1 882 1303 -1204 2236 117 0 0 chr6 4726770 4727068 -177688174 + AluSg SINE Alu 1 298 -12 418 297 156 52 chr6 4727068 4727519 -177687723 + HAL1 LINE L1 1303 1900 -607 479 181 85 11 chr6 4727607 4727701 -177687541 + AluJo SINE Alu 117 217 -95 243 338 68 7 chr6 4727948 4728096 -177687146 + HAL1b LINE L1 749 905 -443 315 324 34 34 chr6 4728193 4728369 -177686873 + HAL1 LINE L1 2226 2401 -106 1933 120 40 36 chr6 4728408 4728574 -177686668 - AluSx SINE Alu -10 302 133 2502 82 0 0 chr6 4728574 4728878 -177686364 - AluY SINE Alu -7 304 1 1933 120 40 36 chr6 4728878 4729012 -177686230 - AluSx SINE Alu -179 133 1 194 318 14 74 chr6 4729506 4729654 -177685588 - MIR SINE MIR -72 190 52 1472 131 25 4 chr6 4729728 4729972 -177685270 + L1MA9 LINE L1 5357 5605 -707 2241 92 3 55 chr6 4729976 4730302 -177684940 + AluSp SINE Alu 1 309 -4 2452 97 0 0 chr6 4730305 4730615 -177684627 + AluSg SINE Alu 1 310 0 1394 118 15 0 chr6 4730619 4730823 -177684419 + L1MA9 LINE L1 5953 6159 -153 * 1597 258 87 68 chr6 4730821 4731116 -177684126 + L1ME3A LINE L1 3586 3874 -2272 2478 77 0 0 chr6 4731116 4731413 -177683829 - AluY SINE Alu -14 297 1 1597 258 87 68 chr6 4731413 4731787 -177683455 + L1ME3A LINE L1 3874 4240 -1906 2542 111 22 8 chr6 4731787 4732157 -177683085 - THE1C LTR MaLR 0 375 1 1597 258 87 68 chr6 4732157 4732492 -177682750 + L1ME3A LINE L1 4240 4621 -1525 2382 100 0 13 chr6 4732492 4732802 -177682440 - AluSq SINE Alu -7 306 1 1597 258 87 68 chr6 4732802 4733035 -177682207 + L1ME3A LINE L1 4621 4848 -1298 508 288 141 13 chr6 4733059 4733651 -177681591 + L1ME3A LINE L1 4928 5579 -591 242 320 30 0 chr6 4734154 4734254 -177680988 + LTR67 LTR ERVL 431 533 -24 906 253 50 44 chr6 4734268 4734352 -177680890 + L1ME3A LINE L1 5581 5663 -507 4904 26 7 0 chr6 4734352 4734919 -177680323 + L1PA4 LINE L1 5585 6155 0 906 253 50 44 chr6 4734919 4735194 -177680048 + L1ME3A LINE L1 5663 5944 -226 365 132 0 13 chr6 4735213 4735289 -177679953 + (TA)n Simple_repeat Simple_repeat 1 75 0 492 257 93 93 chr6 4735593 4736001 -177679241 + L1MC4a LINE L1 5617 6024 -1784 302 188 0 0 chr6 4736005 4736053 -177679189 + MER66A LTR ERV1 290 337 -141 282 281 20 69 chr6 4736100 4736303 -177678939 + L1MC4a LINE L1 6054 6246 -1562 342 0 0 0 chr6 4738529 4738567 -177676675 + (CA)n Simple_repeat Simple_repeat 1 38 0 2118 107 4 0 chr6 4738569 4738839 -177676403 - AluSx SINE Alu -36 276 6 1512 132 107 80 chr6 4739092 4739419 -177675823 - THE1C LTR MaLR 0 375 36 2233 118 0 0 chr6 4739419 4739723 -177675519 + AluSx SINE Alu 1 304 -8 1512 132 107 80 chr6 4739723 4739760 -177675482 - THE1C LTR MaLR -339 36 1 282 366 31 9 chr6 4739924 4740151 -177675091 + L2 LINE L2 2170 2401 -913 1989 112 34 14 chr6 4741042 4741336 -177673906 + AluSx SINE Alu 1 300 -12 302 287 65 0 chr6 4741701 4741809 -177673433 - MIR SINE MIR -108 154 40 2182 88 17 10 chr6 4741809 4742103 -177673139 - AluSc SINE Alu -13 296 1 401 166 12 19 chr6 4742245 4742358 -177672884 - L1M3 LINE L1 -662 5509 5402 372 262 157 34 chr6 4742326 4742677 -177672565 - L1M4 LINE L1 -3090 3056 2663 * 297 0 0 0 chr6 4742677 4742710 -177672532 + (CA)n Simple_repeat Simple_repeat 2 34 0 1723 150 67 0 chr6 4742724 4742991 -177672251 - AluSx SINE Alu -27 285 1 1925 126 48 4 chr6 4743268 4743568 -177671674 + AluSx SINE Alu 1 312 0 2128 126 0 7 chr6 4743733 4744027 -177671215 - AluSg SINE Alu -18 292 1 206 328 76 0 chr6 4744264 4744395 -177670847 + L2 LINE L2 3173 3313 0 2241 122 0 3 chr6 4744470 4744774 -177670468 + AluSq SINE Alu 1 303 -10 470 179 0 9 chr6 4744829 4744935 -177670307 + GA-rich Low_complexity Low_complexity 4 108 0 259 233 222 0 chr6 4744948 4745038 -177670204 + MER5B DNA MER1_type 69 178 0 833 197 77 0 chr6 4745372 4745449 -177669793 + L1MA9 LINE L1 6075 6145 -167 270 0 0 0 chr6 4745449 4745479 -177669763 + (CA)n Simple_repeat Simple_repeat 1 30 0 833 197 77 0 chr6 4745479 4745584 -177669658 + L1MA9 LINE L1 6145 6271 -41 1875 174 7 0 chr6 4746314 4746624 -177668618 + AluJb SINE Alu 1 312 0 1154 176 0 0 chr6 4747440 4747633 -177667609 + AluJb SINE Alu 47 239 -73 2134 146 0 0 chr6 4748118 4748419 -177666823 - AluSx SINE Alu -11 301 1 222 322 46 59 chr6 4748594 4748746 -177666496 - MIR SINE MIR -111 151 2 439 297 104 16 chr6 4748842 4749034 -177666208 + MIR SINE MIR 40 248 -14 2517 37 10 7 chr6 4750498 4750793 -177664449 + AluY SINE Alu 1 296 -15 180 0 0 0 chr6 4751125 4751145 -177664097 + (T)n Simple_repeat Simple_repeat 1 20 0 404 181 0 14 chr6 4751694 4751766 -177663476 + AluJ/FLAM SINE Alu 14 84 -228 1434 180 49 29 chr6 4751959 4752265 -177662977 + AluJo SINE Alu 1 312 0 1703 164 35 0 chr6 4752371 4752657 -177662585 - AluJb SINE Alu -5 307 12 1877 161 27 0 chr6 4752811 4753109 -177662133 - AluSx SINE Alu -6 306 1 363 267 96 84 chr6 4753294 4753444 -177661798 - L1ME4a LINE L1 -222 5899 5752 2041 127 40 3 chr6 4753444 4753744 -177661498 - AluSq SINE Alu -2 311 1 363 267 96 84 chr6 4753744 4753915 -177661327 - L1ME4a LINE L1 -369 5752 5574 380 107 0 0 chr6 4755826 4755882 -177659360 - U6 snRNA snRNA -51 56 1 1869 154 10 3 chr6 4755913 4756212 -177659030 - AluSx SINE Alu -11 301 1 2106 111 27 13 chr6 4756386 4756684 -177658558 - AluSg SINE Alu -8 302 1 673 207 326 4 chr6 4756715 4756942 -177658300 + AluJo SINE Alu 1 300 -2 258 192 39 192 chr6 4757052 4757127 -177658115 - MER81 DNA DNA -4 110 62 1996 155 0 3 chr6 4757127 4757424 -177657818 + AluSx SINE Alu 2 297 -15 258 192 39 192 chr6 4757424 4757478 -177657764 - MER81 DNA DNA -52 62 1 1119 205 114 28 chr6 4757576 4757893 -177657349 - MER2 DNA MER2_type 0 344 1 584 233 93 16 chr6 4757910 4758103 -177657139 - LTR33 LTR ERVL -3 518 311 376 272 95 25 chr6 4758130 4758288 -177656954 - LTR33 LTR ERVL -343 178 10 1736 156 7 41 chr6 4758587 4758882 -177656360 - AluSx SINE Alu -27 285 1 4849 129 37 53 chr6 4759003 4760403 -177654839 - pTR5 LTR ERV1 0 2438 740 1442 153 69 42 chr6 4760662 4760787 -177654455 + AluJo SINE Alu 1 121 -191 2257 95 14 0 chr6 4760787 4761083 -177654159 + AluSg SINE Alu 1 300 -10 1442 153 69 42 chr6 4761083 4761245 -177653997 + AluJo SINE Alu 121 296 -16 196 232 61 12 chr6 4761397 4761479 -177653763 + MIR SINE MIR 112 197 -65 2014 151 0 0 chr6 4764167 4764458 -177650784 + AluJb SINE Alu 1 291 -21 2459 84 10 0 chr6 4764926 4765235 -177650007 + AluSq SINE Alu 1 312 -1 400 325 18 12 chr6 4765627 4765796 -177649446 - L3 LINE CR1 -520 1057 888 2138 102 0 75 chr6 4766046 4766368 -177648874 + AluSx SINE Alu 1 298 -14 1831 182 0 0 chr6 4766584 4766870 -177648372 + AluJo SINE Alu 1 286 -26 23 0 0 0 chr6 4766870 4766893 -177648349 + AT_rich Low_complexity Low_complexity 1 23 0 1573 173 3 40 chr6 4766905 4767205 -177648037 + AluJo SINE Alu 3 291 -21 2145 114 43 3 chr6 4768372 4768671 -177646571 - AluSx SINE Alu -1 311 1 207 297 0 14 chr6 4769180 4769254 -177645988 + G-rich Low_complexity Low_complexity 2 74 0 694 160 75 64 chr6 4769469 4769536 -177645706 - Charlie4a DNA MER1_type -1465 496 431 2407 82 3 13 chr6 4769536 4769841 -177645401 + AluSp SINE Alu 1 302 -11 694 160 75 64 chr6 4769841 4769960 -177645282 - Charlie4a DNA MER1_type -1530 431 308 1606 199 62 71 chr6 4769963 4770013 -177645229 - L1MA10 LINE L1 -7 6327 6278 2104 125 0 7 chr6 4770013 4770309 -177644933 + AluSq SINE Alu 1 294 -19 1606 199 62 71 chr6 4770309 4770725 -177644517 - L1MA10 LINE L1 -56 6278 5865 1108 189 84 0 chr6 4770725 4770963 -177644279 - Charlie4a DNA MER1_type -192 316 59 1923 83 117 0 chr6 4771902 4772168 -177643074 + AluSx SINE Alu 1 297 -15 1481 94 0 0 chr6 4772170 4772351 -177642891 - AluSc SINE Alu -123 186 6 395 300 93 17 chr6 4772355 4772592 -177642650 + L1MC4a LINE L1 5080 5334 -812 1765 144 0 11 chr6 4772653 4772916 -177642326 + AluSx SINE Alu 29 288 -24 784 311 82 26 chr6 4772939 4773411 -177641831 + L1MC4a LINE L1 5374 5872 -298 2380 84 3 0 chr6 4773411 4773711 -177641531 + AluSp SINE Alu 1 347 0 309 43 22 0 chr6 4773711 4773757 -177641485 + (TAAAA)n Simple_repeat Simple_repeat 4 170 0 2244 110 0 28 chr6 4773767 4774085 -177641157 + AluSq SINE Alu 1 309 -4 2331 89 7 3 chr6 4774203 4774506 -177640736 + AluSp SINE Alu 1 304 -9 1081 162 19 14 chr6 4774832 4775048 -177640194 + MER20 DNA MER1_type 1 217 -2 2330 108 0 0 chr6 4775321 4775618 -177639624 - AluSx SINE Alu -15 297 1 1289 274 84 32 chr6 4775867 4776341 -177638901 - MLT1J LTR MaLR -2 509 11 1717 153 38 51 chr6 4776610 4776924 -177638318 + AluJb SINE Alu 1 310 -2 1849 154 3 10 chr6 4778746 4779038 -177636204 + AluJo SINE Alu 4 293 -19 818 206 113 21 chr6 4779120 4779358 -177635884 - MIR SINE MIR -2 260 1 1809 141 17 23 chr6 4779492 4779791 -177635451 - AluJo SINE Alu -15 297 1 1039 79 14 36 chr6 4779986 4780125 -177635117 + AluSq/x SINE Alu 1 136 -176 231 284 77 26 chr6 4780294 4780449 -177634793 - L2 LINE L2 -213 3059 2897 2238 101 10 0 chr6 4780615 4780911 -177634331 + AluSg SINE Alu 1 299 -11 2251 114 0 0 chr6 4781558 4781855 -177633387 + AluSg SINE Alu 1 297 -13 340 296 40 66 chr6 4782416 4782568 -177632674 + L2 LINE L2 3125 3272 0 408 200 144 0 chr6 4782785 4782875 -177632367 + FLAM_C SINE Alu 1 103 -30 228 35 0 0 chr6 4783188 4783217 -177632025 + (CA)n Simple_repeat Simple_repeat 2 30 0 204 197 106 15 chr6 4783451 4783517 -177631725 - MIR3 SINE MIR -10 198 127 1019 69 30 13 chr6 4783813 4784050 -177631192 + (TGGA)n Simple_repeat Simple_repeat 1 241 0 361 232 84 0 chr6 4784338 4784433 -177630809 + MER94 DNA DNA 1 103 -31 776 177 0 0 chr6 4784589 4784713 -177630529 + FLAM_C SINE Alu 2 125 -18 26 0 0 0 chr6 4784716 4784742 -177630500 + AT_rich Low_complexity Low_complexity 1 26 0 818 158 0 0 chr6 4785009 4785136 -177630106 - AluJb SINE Alu -185 127 1 278 355 21 35 chr6 4785264 4785405 -177629837 + MIR3 SINE MIR 32 170 -38 357 24 0 0 chr6 4786275 4786317 -177628925 + (CA)n Simple_repeat Simple_repeat 2 43 0 28 29 0 0 chr6 4786995 4787030 -177628212 + AT_rich Low_complexity Low_complexity 1 35 0 260 301 60 15 chr6 4787052 4787185 -177628057 + MIR SINE MIR 54 192 -70 2237 118 0 0 chr6 4787520 4787824 -177627418 + AluSx SINE Alu 1 304 -8 251 135 0 0 chr6 4787824 4787861 -177627381 - MSTA LTR MaLR -391 37 1 282 366 31 9 chr6 4788025 4788252 -177626990 + L2 LINE L2 2170 2401 -913 1989 112 34 14 chr6 4789143 4789437 -177625805 + AluSx SINE Alu 1 300 -12 302 287 65 0 chr6 4789802 4789910 -177625332 - MIR SINE MIR -108 154 40 2182 88 17 10 chr6 4789910 4790204 -177625038 - AluSc SINE Alu -13 296 1 401 166 12 19 chr6 4790346 4790459 -177624783 - L1M3 LINE L1 -662 5509 5402 300 275 91 30 chr6 4790427 4790725 -177624517 - L1M3 LINE L1 -3090 3056 2719 * 36 0 0 21 chr6 4790877 4790909 -177624333 + AT_rich Low_complexity Low_complexity 1 33 -13 2250 95 3 0 chr6 4790909 4791194 -177624048 - AluSx SINE Alu -26 286 1 36 0 0 21 chr6 4791194 4791208 -177624034 + AT_rich Low_complexity Low_complexity 33 46 0 686 195 0 0 chr6 4791208 4791326 -177623916 + FRAM SINE Alu 1 113 -63 2682 51 0 10 chr6 4791533 4791847 -177623395 - AluY SINE Alu 0 311 1 571 245 155 0 chr6 4791946 4792101 -177623141 + MER5A DNA MER1_type 11 189 0 189 0 0 0 chr6 4793529 4793550 -177621692 + (TG)n Simple_repeat Simple_repeat 2 22 0 426 94 0 0 chr6 4793552 4793616 -177621626 + (TAGG)n Simple_repeat Simple_repeat 4 67 0 1661 178 25 0 chr6 4793617 4793903 -177621339 - AluJb SINE Alu -19 293 1 915 119 0 30 chr6 4794709 4794843 -177620399 + FRAM SINE Alu 29 158 -18 180 0 0 0 chr6 4795717 4795737 -177619505 + (TTG)n Simple_repeat Simple_repeat 2 21 0 2241 100 0 34 chr6 4795742 4796063 -177619179 - AluSq SINE Alu -3 310 1 260 301 60 15 chr6 4796398 4796531 -177618711 - MIR SINE MIR -70 192 54 28 29 0 0 chr6 4796553 4796588 -177618654 + AT_rich Low_complexity Low_complexity 1 35 0 357 24 0 0 chr6 4797266 4797308 -177617934 + (TG)n Simple_repeat Simple_repeat 2 43 0 278 355 21 35 chr6 4798178 4798319 -177616923 - MIR3 SINE MIR -38 170 32 818 158 0 0 chr6 4798447 4798574 -177616668 + AluJb SINE Alu 1 127 -185 2044 136 3 3 chr6 4798750 4799036 -177616206 + AluSx SINE Alu 1 286 -26 186 71 0 0 chr6 4799036 4799064 -177616178 + (TA)n Simple_repeat Simple_repeat 2 29 0 2012 121 7 10 chr6 4799072 4799362 -177615880 + AluSx SINE Alu 1 289 -23 28 61 0 0 chr6 4799534 4799583 -177615659 + AT_rich Low_complexity Low_complexity 1 49 0 2536 64 0 6 chr6 4799650 4799961 -177615281 - AluY SINE Alu -2 309 1 270 292 36 18 chr6 4800045 4800213 -177615029 - L1ME4a LINE L1 -226 5895 5725 2444 82 10 0 chr6 4800296 4800668 -177614574 + AluSq SINE Alu 5 379 0 2260 103 0 0 chr6 4802042 4802334 -177612908 - AluSg SINE Alu -18 292 1 226 254 111 0 chr6 4802461 4802524 -177612718 + MIR SINE MIR 123 192 -70 2111 283 124 41 chr6 4802943 4804353 -177610889 + L1MEd LINE L1 543 1835 -4294 2130 136 0 13 chr6 4804353 4804655 -177610587 + AluSx SINE Alu 1 298 -14 2111 283 124 41 chr6 4804655 4804971 -177610271 + L1MEd LINE L1 1835 2123 -4006 2286 123 0 0 chr6 4804971 4805280 -177609962 - AluSg SINE Alu -1 309 1 2111 283 124 41 chr6 4805280 4805733 -177609509 + L1MEd LINE L1 2123 2537 -3592 2071 131 7 7 chr6 4805733 4806038 -177609204 + AluSx SINE Alu 1 305 -7 2111 283 124 41 chr6 4806038 4806247 -177608995 + L1MEd LINE L1 2537 2727 -3402 2200 131 0 0 chr6 4806247 4806553 -177608689 - AluSx SINE Alu -3 309 4 2111 283 124 41 chr6 4806553 4806892 -177608350 + L1MEd LINE L1 2727 3036 -3093 2336 106 0 3 chr6 4806892 4807203 -177608039 - AluSq SINE Alu -3 310 1 2111 283 124 41 chr6 4807203 4807415 -177607827 + L1MEd LINE L1 3036 3229 -2900 1720 164 20 16 chr6 4807415 4807720 -177607522 + AluJb SINE Alu 1 306 -6 2111 283 124 41 chr6 4807720 4807957 -177607285 + L1MEd LINE L1 3229 3938 -2191 2068 122 0 0 chr6 4807985 4808263 -177606979 + AluSg SINE Alu 1 278 -32 267 140 0 0 chr6 4808265 4808315 -177606927 + (GGGGA)n Simple_repeat Simple_repeat 4 53 0 365 258 157 13 chr6 4808315 4808474 -177606768 + L1MEd LINE L1 3947 4128 -2001 4198 140 108 100 chr6 4808942 4809347 -177605895 + L1MC3 LINE L1 6688 7088 -697 231 276 46 0 chr6 4809347 4809434 -177605808 + MLT1F1 LTR MaLR 35 125 -442 4198 140 108 100 chr6 4809434 4810011 -177605231 + L1MC3 LINE L1 7088 7765 -20 2333 70 17 7 chr6 4810484 4810658 -177604584 - AluY SINE Alu -7 304 124 405 0 0 0 chr6 4810658 4810703 -177604539 + (TG)n Simple_repeat Simple_repeat 2 46 0 2333 70 17 7 chr6 4810703 4810829 -177604413 - AluY SINE Alu -187 124 1 305 313 157 0 chr6 4810855 4810970 -177604272 + L2 LINE L2 3134 3266 -6 304 197 0 0 chr6 4811153 4811214 -177604028 + MIR SINE MIR 181 241 -21 21 0 0 0 chr6 4811225 4811246 -177603996 + AT_rich Low_complexity Low_complexity 1 21 0 309 163 75 25 chr6 4811567 4811647 -177603595 + MER112 DNA MER1_type 1 84 -176 372 175 0 97 chr6 4811766 4811807 -177603435 - MER5A DNA MER1_type -81 108 65 2092 117 0 23 chr6 4811807 4812106 -177603136 - AluSx SINE Alu -20 292 1 372 175 0 97 chr6 4812106 4812178 -177603064 - MER5A DNA MER1_type -124 65 6 189 74 0 0 chr6 4812398 4812425 -177602817 + (TC)n Simple_repeat Simple_repeat 2 28 0 29 110 0 0 chr6 4816310 4816437 -177598805 + GC_rich Low_complexity Low_complexity 1 127 0 272 229 9 46 chr6 4816836 4816945 -177598297 + C-rich Low_complexity Low_complexity 3 107 0 188 33 0 33 chr6 4816972 4817002 -177598240 + (CCCCG)n Simple_repeat Simple_repeat 5 33 0 209 143 20 20 chr6 4817150 4817199 -177598043 + (CCCCG)n Simple_repeat Simple_repeat 3 51 0 22 0 0 0 chr6 4817291 4817313 -177597929 + GC_rich Low_complexity Low_complexity 1 22 0 28 0 0 0 chr6 4817412 4817440 -177597802 + GC_rich Low_complexity Low_complexity 1 28 0 271 124 41 52 chr6 4817526 4817623 -177597619 + (CCCG)n Simple_repeat Simple_repeat 4 99 0 190 292 117 25 chr6 4818685 4818805 -177596437 - L2 LINE L2 -1 3312 3182 441 257 189 22 chr6 4819526 4819748 -177595494 + MIR SINE MIR 3 261 -1 189 310 0 52 chr6 4820151 4820209 -177595033 + L2 LINE L2 3203 3257 -15 1109 225 64 35 chr6 4820447 4820758 -177594484 - MER58B DNA MER1_type -21 320 1 1495 144 9 115 chr6 4820913 4821261 -177593981 - AluYa5 SINE Alu 0 311 1 510 281 81 64 chr6 4823860 4824110 -177591132 - L1MEd LINE L1 -4641 1669 1425 2110 133 0 7 chr6 4824110 4824411 -177590831 - AluSq SINE Alu -14 299 1 510 281 81 64 chr6 4824411 4824877 -177590365 - L1MEd LINE L1 -4885 1425 908 1936 144 73 12 chr6 4825315 4825417 -177589825 + MER7A DNA MER2_type 2 96 -2942 2648 112 20 0 chr6 4825417 4825774 -177589468 + THE1B LTR MaLR 1 364 0 1936 144 73 12 chr6 4825774 4825998 -177589244 + MER7A DNA MER2_type 96 346 0 2242 114 3 0 chr6 4828458 4828764 -177586478 - AluSx SINE Alu -5 307 1 1924 129 34 3 chr6 4828900 4829195 -177586047 + AluSx SINE Alu 1 304 -8 1759 170 7 0 chr6 4829766 4830066 -177585176 - AluJb SINE Alu -10 302 1 380 293 61 45 chr6 4832056 4832254 -177582988 + MARNA DNA Mariner 275 475 -111 2485 55 0 32 chr6 4832576 4832884 -177582358 - AluY SINE Alu -13 298 1 516 263 131 58 chr6 4832937 4833126 -177582116 - L1ME LINE L1 -840 5240 5066 2177 109 3 17 chr6 4833126 4833428 -177581814 - AluSx SINE Alu -14 298 1 516 263 131 58 chr6 4833428 4833931 -177581311 - L1ME LINE L1 -1014 5066 4497 229 262 0 83 chr6 4833931 4834015 -177581227 - L2 LINE L2 -59 3254 3178 2485 240 141 49 chr6 4834132 4835351 -177579891 - L2 LINE L2 -421 2893 1563 603 279 148 41 chr6 4835516 4836057 -177579185 - L1ME LINE L1 -1801 4279 3681 329 252 271 0 chr6 4836382 4836600 -177578642 - L1M4 LINE L1 -2906 3240 2964 1772 104 100 19 chr6 4836655 4836925 -177578317 - AluSx SINE Alu -20 292 1 22 0 0 0 chr6 4837058 4837080 -177578162 + AT_rich Low_complexity Low_complexity 1 22 0 189 74 0 0 chr6 4838100 4838127 -177577115 + (TTTTC)n Simple_repeat Simple_repeat 4 30 0 2390 194 55 30 chr6 4838127 4838652 -177576590 - L1MB7 LINE L1 -16 6168 5631 1852 197 0 0 chr6 4838656 4838965 -177576277 - AluJb SINE Alu -3 309 1 2402 264 135 36 chr6 4839295 4840136 -177575106 - L1ME LINE L1 -2406 3674 2918 1593 176 51 14 chr6 4840136 4840431 -177574811 - AluJb SINE Alu -6 306 1 2402 264 135 36 chr6 4840431 4842470 -177572772 - L1ME LINE L1 -3162 2918 278 225 283 19 66 chr6 4842575 4842681 -177572561 - L1ME LINE L1 -5610 460 360 1782 171 3 7 chr6 4842953 4843245 -177571997 + AluJo SINE Alu 6 296 -16 180 0 0 0 chr6 4844426 4844446 -177570796 + (T)n Simple_repeat Simple_repeat 1 20 0 23 54 0 0 chr6 4844608 4844645 -177570597 + AT_rich Low_complexity Low_complexity 1 37 0 2565 162 24 31 chr6 4846133 4846644 -177568598 - MLT2B1 LTR ERVL -8 512 6 4252 221 91 51 chr6 4847127 4847530 -177567712 - L1MC4a LINE L1 0 7808 7422 1520 218 17 57 chr6 4847530 4847933 -177567309 - MLT1B LTR MaLR 0 390 4 4252 221 91 51 chr6 4847933 4848284 -177566958 - L1MC4a LINE L1 -386 7422 7086 2056 137 0 9 chr6 4848284 4848599 -177566643 - AluJo SINE Alu 0 312 1 4252 221 91 51 chr6 4848599 4849230 -177566012 - L1MC4a LINE L1 -722 7086 6367 566 245 0 2 chr6 4849231 4849416 -177565826 + MER58A DNA MER1_type 6 223 -1 2588 218 53 30 chr6 4849424 4850159 -177565083 - L1MC4a LINE L1 -1434 6374 5623 1583 176 76 53 chr6 4851286 4851643 -177563599 - MLT1A1 LTR MaLR 0 365 1 242 163 23 0 chr6 4851741 4851784 -177563458 + MER69 DNA AcHobo 1 44 -133 896 160 37 102 chr6 4852298 4852542 -177562700 - AluJo SINE Alu -8 304 77 356 214 51 41 chr6 4852668 4852766 -177562476 + MER5A DNA MER1_type 14 112 -77 344 260 127 48 chr6 4852885 4853205 -177562037 - L1MC4a LINE L1 -494 5627 5538 * 559 265 88 89 chr6 4853202 4854154 -177561088 - L1MC4a LINE L1 -1331 4815 3865 1665 177 16 35 chr6 4854454 4854771 -177560471 - AluJb SINE Alu -1 311 1 1870 152 10 7 chr6 4855212 4855515 -177559727 - AluSx SINE Alu -8 304 1 201 175 0 0 chr6 4855899 4855939 -177559303 + (TATATG)n Simple_repeat Simple_repeat 2 41 0 333 310 147 11 chr6 4856166 4856350 -177558892 - L1MC4a LINE L1 -485 5636 5428 222 91 0 0 chr6 4856366 4856399 -177558843 + (T)n Simple_repeat Simple_repeat 1 33 0 300 330 52 26 chr6 4856555 4856785 -177558457 - L1MC4a LINE L1 -1008 5138 4903 1854 155 36 7 chr6 4857178 4857481 -177557761 - AluSx SINE Alu 0 312 1 1820 160 7 0 chr6 4858667 4858981 -177556261 + AluJb SINE Alu 1 316 0 423 0 0 0 chr6 4859809 4859856 -177555386 + (TC)n Simple_repeat Simple_repeat 2 48 0 189 0 0 0 chr6 4859855 4859876 -177555366 + (TG)n Simple_repeat Simple_repeat 2 22 0 * 1018 169 13 65 chr6 4860381 4860612 -177554630 + MER20 DNA MER1_type 1 219 0 1049 56 0 42 chr6 4861953 4862095 -177553147 - AluSg/x SINE Alu -1 311 176 2037 130 3 10 chr6 4862144 4862444 -177552798 + AluSx SINE Alu 1 298 -14 1644 154 6 91 chr6 4862660 4862990 -177552252 - AluJb SINE Alu -9 303 2 233 262 92 35 chr6 4864152 4864293 -177550949 - L1MB1 LINE L1 0 6168 6020 * 436 211 158 0 chr6 4864291 4864424 -177550818 - L1MB4 LINE L1 -12 6168 6015 * 3870 182 64 33 chr6 4864418 4865467 -177549775 - L1MB4 LINE L1 -11 6667 5590 423 170 41 109 chr6 4865462 4865567 -177549675 - L1MC4a LINE L1 -1433 4713 4619 * 2223 116 0 0 chr6 4865567 4865859 -177549383 - AluSx SINE Alu -16 296 5 423 170 41 109 chr6 4865859 4865900 -177549342 - L1MC4a LINE L1 -1527 4619 4577 1361 206 224 32 chr6 4865919 4866420 -177548822 - L1MB4 LINE L1 -1800 4844 4248 747 248 57 52 chr6 4866424 4866634 -177548608 - MER82 DNA MER2_type 0 653 443 381 303 6 46 chr6 4866680 4866813 -177548429 + MIR SINE MIR 31 164 -44 3851 213 118 72 chr6 4866909 4868351 -177546891 - L1MB4 LINE L1 -2849 3795 2420 2205 118 3 0 chr6 4868351 4868647 -177546595 - AluSx SINE Alu -15 297 1 3851 213 118 72 chr6 4868647 4868945 -177546297 - L1MB4 LINE L1 -4224 2420 2137 1198 100 6 18 chr6 4868945 4869115 -177546127 - FRAM SINE Alu -9 167 1 3851 213 118 72 chr6 4869115 4870093 -177545149 - L1MB4 LINE L1 -4507 2137 777 183 80 0 0 chr6 4870093 4870118 -177545124 + (CAAAA)n Simple_repeat Simple_repeat 3 27 0 3851 213 118 72 chr6 4870118 4870293 -177544949 - L1MB4 LINE L1 -5867 777 611 338 280 77 33 chr6 4870593 4870775 -177544467 - L1MB4 LINE L1 -6335 207 18 230 314 0 14 chr6 4870977 4871047 -177544195 + MER113 DNA MER1_type? 452 520 -1 5190 21 0 9 chr6 4871291 4871865 -177543377 - L1PA3 LINE L1 -1 6154 5586 32443 35 2 1 chr6 4871865 4876923 -177538319 - L1PA3 LINE L1 -1087 5059 2 352 266 79 50 chr6 4877641 4877780 -177537462 + L2 LINE L2 3128 3270 -2 22 35 0 0 chr6 4878047 4878076 -177537166 + AT_rich Low_complexity Low_complexity 1 29 0 2318 89 0 19 chr6 4878141 4878457 -177536785 - AluSg SINE Alu 0 310 1 1627 201 0 13 chr6 4878462 4878770 -177536472 - AluJb SINE Alu -8 304 1 10689 178 30 5 chr6 4878852 4879386 -177535856 - L1PB1 LINE L1 0 6867 6348 2087 92 36 0 chr6 4879386 4879667 -177535575 - AluSg SINE Alu -19 291 1 10689 178 30 5 chr6 4879667 4881532 -177533710 - L1PB1 LINE L1 -519 6348 4350 205 49 0 49 chr6 4881532 4881573 -177533669 + (TTTTG)n Simple_repeat Simple_repeat 2 40 0 10689 178 30 5 chr6 4881573 4882649 -177532593 - L1PB1 LINE L1 -2517 4350 3303 51 0 0 0 chr6 4882649 4882700 -177532542 + AT_rich Low_complexity Low_complexity 1 51 0 276 99 64 41 chr6 4882700 4882872 -177532370 + (TTATA)n Simple_repeat Simple_repeat 1 176 0 271 173 13 13 chr6 4882875 4882950 -177532292 + (TAA)n Simple_repeat Simple_repeat 1 75 0 8231 119 60 37 chr6 4882957 4884909 -177530333 - L1PB1 LINE L1 -3493 3369 1389 521 79 8 0 chr6 4884952 4885077 -177530165 - L1PB1 LINE L1 -5700 1163 995 1051 149 0 5 chr6 4885077 4885272 -177529970 - L1PB1 LINE L1 -6669 194 1 768 218 94 24 chr6 4885372 4885942 -177529300 + MER114 LTR ERV 1 648 0 180 0 0 0 chr6 4885984 4886004 -177529238 + (CAAAA)n Simple_repeat Simple_repeat 1 20 0 1505 212 36 3 chr6 4886243 4886573 -177528669 - MER58B DNA MER1_type 0 341 1 297 232 0 0 chr6 4887507 4887563 -177527679 + MER94 DNA DNA 79 134 0 299 239 83 46 chr6 4887812 4887921 -177527321 - MER5A DNA MER1_type 0 189 77 185 333 31 23 chr6 4888835 4888964 -177526278 + L2 LINE L2 3183 3312 -1 364 254 132 54 chr6 4890428 4890633 -177524609 - L2 LINE L2 -18 3295 3075 227 194 78 108 chr6 4890648 4890777 -177524465 + MIR SINE MIR 57 133 -75 211 324 15 15 chr6 4890899 4890967 -177524275 - L2 LINE L2 -4 3268 3201 380 188 247 39 chr6 4891854 4892008 -177523234 + MIR SINE MIR 48 233 -29 304 345 39 0 chr6 4892729 4892961 -177522281 - L1MC4 LINE L1 -701 7341 7101 1050 89 16 0 chr6 4893008 4893316 -177521926 + (TTCC)n Simple_repeat Simple_repeat 1 313 0 330 295 20 13 chr6 4893434 4893488 -177521754 - L1MC4 LINE L1 -1037 7005 6953 1721 171 34 0 chr6 4893488 4893781 -177521461 - AluJo SINE Alu -9 303 1 330 295 20 13 chr6 4893781 4893875 -177521367 - L1MC4 LINE L1 -1089 6953 6856 556 276 45 78 chr6 4893905 4894148 -177521094 - MIR SINE MIR -15 247 13 246 156 0 0 chr6 4894163 4894208 -177521034 + CT-rich Low_complexity Low_complexity 6 50 0 948 142 11 80 chr6 4895979 4896155 -177519087 - AluJo SINE Alu -22 290 127 252 156 0 0 chr6 4896482 4896527 -177518715 + MER112 DNA MER1_type 205 249 -11 631 262 112 65 chr6 4896781 4897166 -177518076 - L2 LINE L2 -28 3285 2883 366 263 244 25 chr6 4897212 4897528 -177517714 - L2 LINE L2 -645 2669 2285 641 136 40 0 chr6 4897828 4897953 -177517289 - L1MB3 LINE L1 -1 6182 6053 224 317 59 54 chr6 4899074 4899295 -177515947 - MIR SINE MIR -33 229 8 728 226 74 43 chr6 4899405 4899635 -177515607 + MIR SINE MIR 16 252 -10 2582 64 0 0 chr6 4900582 4900893 -177514349 - AluY SINE Alu 0 311 1 295 80 0 20 chr6 4901154 4901204 -177514038 - MLT2A1 LTR ERVL -8 445 397 271 79 89 20 chr6 4901206 4901307 -177513935 + (TA)n Simple_repeat Simple_repeat 2 109 0 2397 101 40 18 chr6 4901338 4901733 -177513509 - MLT2A1 LTR ERVL -40 404 1 3106 170 5 4 chr6 4903488 4904047 -177511195 + L1PA16 LINE L1 5587 6146 -20 521 319 128 24 chr6 4904608 4905009 -177510233 + L1MCa LINE L1 1376 2051 -736 2511 107 6 8 chr6 4905199 4905555 -177509687 + THE1A LTR MaLR 1 355 0 2643 127 8 106 chr6 4905643 4906235 -177509007 + LTR10A LTR ERV1 12 545 -64 309 279 211 19 chr6 4906548 4906860 -177508382 + L1MCa LINE L1 2831 3202 -3224 402 274 135 61 chr6 4906965 4907188 -177508054 + L1MCa LINE L1 3406 3611 -2815 1131 168 25 0 chr6 4907188 4907391 -177507851 + MER6B DNA MER2_type 2 209 -1 402 274 135 61 chr6 4907391 4907626 -177507616 + L1MCa LINE L1 3611 3898 -2528 1603 245 98 14 chr6 4907904 4908456 -177506786 - L1M4 LINE L1 -1856 4788 4191 2532 244 72 73 chr6 4908499 4909781 -177505461 - L1M4 LINE L1 -2692 3952 2700 2248 124 0 0 chr6 4909781 4910088 -177505154 - AluSx SINE Alu -5 307 1 2532 244 72 73 chr6 4910088 4910733 -177504509 - L1M4 LINE L1 -3944 2700 2056 937 188 0 0 chr6 4910764 4910913 -177504329 - FRAM SINE Alu -19 157 9 1100 257 109 35 chr6 4910941 4911737 -177503505 - L1M4 LINE L1 -4732 1914 1076 391 167 0 0 chr6 4912064 4912130 -177503112 - Tigger4(Zombi) DNA MER2_type -2665 66 1 2043 121 13 3 chr6 4913074 4913372 -177501870 - AluSq SINE Alu -12 301 1 1742 255 98 5 chr6 4915269 4915915 -177499327 - L1ME2 LINE L1 -4 6160 5455 733 251 100 36 chr6 4915887 4916386 -177498856 - L1ME2 LINE L1 -1381 4765 4235 * 1324 204 78 78 chr6 4916655 4917410 -177497832 - L1ME2 LINE L1 -15 6218 5359 361 131 0 0 chr6 4917438 4917499 -177497743 + MLT1A1-int LTR MaLR 1662 1722 -13 1603 204 64 0 chr6 4917532 4917875 -177497367 + MLT1A1 LTR MaLR 1 365 0 1035 272 61 43 chr6 4917999 4918702 -177496540 - L1ME2 LINE L1 -968 5247 4532 * 1964 238 136 56 chr6 4918696 4920150 -177495092 - L1ME2 LINE L1 -2228 3987 2418 2439 91 0 3 chr6 4920245 4920552 -177494690 - AluSq SINE Alu -7 306 1 4914 159 62 19 chr6 4920558 4921666 -177493576 - L1MC1 LINE L1 -2 6331 5186 474 265 48 59 chr6 4921673 4922031 -177493211 - L1ME2 LINE L1 -3826 2389 2076 406 312 51 22 chr6 4922092 4922230 -177493012 + MER5A DNA MER1_type 33 174 -15 385 221 129 42 chr6 4922236 4922476 -177492766 - L1ME2 LINE L1 -4387 2009 1749 940 264 123 21 chr6 4922532 4922914 -177492328 + LTR40b LTR ERVL 1 421 -41 766 270 102 24 chr6 4922931 4923368 -177491874 + HERVL40 LTR ERVL 43 568 -4962 661 270 0 54 chr6 4923447 4923688 -177491554 + HERVL40 LTR ERVL 606 833 -4697 281 197 0 0 chr6 4924916 4924977 -177490265 + HERVL68 LTR ERVL 2830 2890 -147 * 870 251 42 0 chr6 4924966 4925205 -177490037 + HERVL68 LTR ERVL 5278 5526 -4 789 267 105 24 chr6 4925209 4925580 -177489662 + LTR40a LTR ERVL 1 401 -118 1285 222 4 33 chr6 4925582 4925690 -177489552 + Tigger7 DNA MER2_type 1 111 -622 1960 166 0 0 chr6 4925690 4925986 -177489256 - AluJo SINE Alu -16 296 1 1285 222 4 33 chr6 4925986 4926152 -177489090 + Tigger7 DNA MER2_type 111 267 -466 434 216 0 0 chr6 4926153 4926241 -177489001 + Tigger7 DNA MER2_type 2396 2483 -4 500 139 37 56 chr6 4926252 4926360 -177488882 + LTR40a LTR ERVL 410 515 -4 7995 211 81 25 chr6 4926428 4929762 -177485480 - L1MB8 LINE L1 0 6178 2658 793 213 54 76 chr6 4929897 4929915 -177485327 + MER58B DNA MER1_type 71 88 -2332 2432 73 3 3 chr6 4929915 4930215 -177485027 - AluSg SINE Alu -10 300 1 793 213 54 76 chr6 4930215 4930473 -177484769 + MER58B DNA MER1_type 88 341 0 2329 97 0 0 chr6 4934103 4934403 -177480839 + AluSx SINE Alu 1 300 -12 193 272 123 0 chr6 4934796 4934877 -177480365 - MIR3 SINE MIR -8 200 110 666 256 36 15 chr6 4935049 4935244 -177479998 + MER58 DNA MER1_type 2 200 -141 1175 105 7 0 chr6 4935289 4935441 -177479801 - AluSq SINE Alu -160 153 1 228 67 0 0 chr6 4935527 4935557 -177479685 + (TG)n Simple_repeat Simple_repeat 2 31 0 233 326 0 0 chr6 4935576 4935665 -177479577 + L1MC4 LINE L1 6615 6703 -1339 234 113 0 75 chr6 4935700 4935753 -177479489 + L1MC4 LINE L1 6653 6701 -1341 * 237 299 23 0 chr6 4935734 4935821 -177479421 + L1MC4 LINE L1 6615 6703 -1339 232 299 23 0 chr6 4935757 4935844 -177479398 - L1MC4 LINE L1 -1339 6703 6615 * 204 217 0 0 chr6 4935847 4935893 -177479349 + (TA)n Simple_repeat Simple_repeat 2 47 0 237 299 86 8 chr6 4936469 4936586 -177478656 + L2 LINE L2 3186 3311 -2 835 152 0 8 chr6 4937772 4937897 -177477345 + FLAM_C SINE Alu 1 124 -19 1869 83 8 12 chr6 4937955 4938209 -177477033 + AluY SINE Alu 43 295 -16 975 159 6 29 chr6 4938210 4938380 -177476862 + AluJo/FRAM SINE Alu 138 303 -9 1027 258 54 81 chr6 4939364 4939918 -177475324 - MER34 LTR ERV1 -3 539 1 474 179 36 27 chr6 4940437 4940549 -177474693 - L1MC4 LINE L1 -2 8040 7928 218 205 0 0 chr6 4940568 4940607 -177474635 + (CATATA)n Simple_repeat Simple_repeat 1 39 0 465 66 0 0 chr6 4940907 4940968 -177474274 + (TA)n Simple_repeat Simple_repeat 2 62 0 260 250 62 0 chr6 4941002 4941066 -177474176 - U6 snRNA snRNA -1 106 39 220 254 112 52 chr6 4941675 4941809 -177473433 - MIR3 SINE MIR -62 146 5 347 283 143 56 chr6 4941854 4942140 -177473102 - MLT1K LTR MaLR -1 587 277 2239 92 10 26 chr6 4942254 4942559 -177472683 + AluSp SINE Alu 1 300 -13 406 196 27 9 chr6 4945919 4946031 -177469211 - L1MA4A LINE L1 -1 6302 6189 1517 157 19 74 chr6 4947487 4947811 -177467431 - AluJb SINE Alu -6 306 1 230 342 56 51 chr6 4949586 4949708 -177465534 + L2 LINE L2 2653 2773 -499 2136 102 3 16 chr6 4949708 4950011 -177465231 - AluY SINE Alu -12 299 1 230 342 56 51 chr6 4950011 4950259 -177464983 + L2 LINE L2 2773 3059 -213 2298 55 41 17 chr6 4950971 4951264 -177463978 - AluY SINE Alu -11 300 1 23 86 0 0 chr6 4951803 4951861 -177463381 + AT_rich Low_complexity Low_complexity 1 58 0 690 241 76 101 chr6 4951908 4952382 -177462860 - LTR37B LTR ERV1 -2 466 5 1825 156 138 31 chr6 4952736 4953121 -177462121 - MSTC LTR MaLR -2 426 1 28 0 0 0 chr6 4953392 4953420 -177461822 + AT_rich Low_complexity Low_complexity 1 28 0 935 206 57 0 chr6 4953827 4954036 -177461206 - MER58A DNA MER1_type -1 223 3 331 192 111 134 chr6 4954112 4954284 -177460958 - L1MCc LINE L1 -5396 1027 860 373 335 78 9 chr6 4954538 4954768 -177460474 - L1MCc LINE L1 -6091 332 87 5142 138 22 23 chr6 4955520 4956393 -177458849 + MER4D LTR ERV1 1 872 0 1027 154 104 36 chr6 4959544 4959764 -177455478 - MER46A DNA MER2_type 0 236 2 2073 209 112 6 chr6 4959950 4960485 -177454757 + L1MB4 LINE L1 5589 6180 0 1977 132 11 0 chr6 4960774 4961055 -177454187 - AluSx SINE Alu -28 284 1 213 39 0 0 chr6 4961135 4961161 -177454081 + (TG)n Simple_repeat Simple_repeat 1 26 0 208 204 0 0 chr6 4961955 4961999 -177453243 - L2 LINE L2 -7 3306 3263 4044 135 67 21 chr6 4963098 4963845 -177451397 - L1MA5 LINE L1 -3 6297 5517 1834 35 0 31 chr6 4963845 4964071 -177451171 + AluY SINE Alu 92 310 -1 194 281 18 0 chr6 4964091 4964148 -177451094 + MER5B DNA MER1_type 121 178 0 2387 50 10 17 chr6 4965539 4965836 -177449406 - AluY SINE Alu 0 311 17 392 242 144 70 chr6 4967142 4967427 -177447815 - L1ME4a LINE L1 -270 5851 5546 291 54 0 0 chr6 4967563 4967600 -177447642 + (TG)n Simple_repeat Simple_repeat 2 38 0 1677 118 126 16 chr6 4967601 4967855 -177447387 - AluSx SINE Alu -26 286 5 195 42 0 0 chr6 4968392 4968416 -177446826 + (TG)n Simple_repeat Simple_repeat 1 24 0 767 284 119 33 chr6 4969146 4969633 -177445609 - L1MEc LINE L1 -4559 1658 1108 354 45 0 0 chr6 4969633 4969677 -177445565 + (CA)n Simple_repeat Simple_repeat 2 45 0 767 284 119 33 chr6 4969677 4969794 -177445448 - L1MEc LINE L1 -5109 1108 1002 1415 288 69 47 chr6 4969838 4970789 -177444453 - L1MEc LINE L1 -5381 1015 44 207 292 191 0 chr6 4971204 4971293 -177443949 + MIR3 SINE MIR 75 180 -28 505 319 98 25 chr6 4971297 4971654 -177443588 - L2 LINE L2 -20 3293 2911 1543 201 25 38 chr6 4972293 4972661 -177442581 - MLT1A1 LTR MaLR -2 363 1 26 30 0 0 chr6 4974457 4974490 -177440752 + AT_rich Low_complexity Low_complexity 1 33 0 191 372 26 0 chr6 4976652 4976730 -177438512 - MIR SINE MIR -122 140 61 863 128 0 0 chr6 4977277 4977402 -177437840 + FLAM_C SINE Alu 1 125 -18 1476 194 3 7 chr6 4977414 4977708 -177437534 + AluJo SINE Alu 1 293 -19 186 156 0 0 chr6 4978411 4978456 -177436786 + T-rich Low_complexity Low_complexity 1 45 0 1365 105 35 18 chr6 4978653 4978882 -177436360 - L1MA8 LINE L1 -5 6286 6054 22 0 0 0 chr6 4984169 4984191 -177431051 + AT_rich Low_complexity Low_complexity 1 22 0 435 223 116 0 chr6 4984672 4984793 -177430449 - LTR16A LTR ERVL 0 450 316 289 280 80 13 chr6 4984836 4984986 -177430256 - LTR16A LTR ERVL -290 160 1 1539 240 109 46 chr6 4985081 4985730 -177429512 + L1MC4a LINE L1 7106 7802 -6 297 308 25 25 chr6 4986431 4986551 -177428691 - HERV16 LTR ERVL -1450 4314 4195 462 281 62 0 chr6 4987292 4987502 -177427740 - HERV16 LTR ERVL -3880 1116 894 227 139 23 0 chr6 4988147 4988190 -177427052 - LTR16A LTR ERVL -83 367 324 361 176 63 142 chr6 4988947 4989152 -177426090 + MER20 DNA MER1_type 31 219 0 2187 47 0 14 chr6 4991074 4991353 -177423889 + AluY SINE Alu 25 299 -12 1823 133 0 4 chr6 4993176 4993455 -177421787 - AluSx SINE Alu -16 296 19 2058 110 0 0 chr6 4994014 4994306 -177420936 + AluSx SINE Alu 1 292 -20 22 0 0 0 chr6 4994310 4994332 -177420910 + AT_rich Low_complexity Low_complexity 1 22 0 21 36 0 0 chr6 4995923 4995951 -177419291 + AT_rich Low_complexity Low_complexity 1 28 0 260 259 126 44 chr6 4996780 4996915 -177418327 - MIR SINE MIR -41 221 76 499 261 113 53 chr6 4997197 4997515 -177417727 + L1ME4a LINE L1 5490 5826 -295 25 65 0 0 chr6 4998358 4998404 -177416838 + AT_rich Low_complexity Low_complexity 1 46 0 369 228 55 39 chr6 4998859 4998986 -177416256 - MIR3 SINE MIR -66 142 14 3782 237 64 19 chr6 4999639 5000818 -177414424 + L1M4 LINE L1 2570 3800 -2346 539 176 0 0 chr6 5000818 5000909 -177414333 + AluJ/FRAM SINE Alu 217 307 -5 3089 160 52 86 chr6 5000909 5001710 -177413532 + L1MB7 LINE L1 5392 6165 -19 406 287 63 33 chr6 5001747 5002248 -177412994 + L1MEc LINE L1 2102 2583 -3632 473 115 13 0 chr6 5002250 5002328 -177412914 + (GGA)n Simple_repeat Simple_repeat 3 81 0 804 263 251 49 chr6 5002339 5002825 -177412417 + MLT1E LTR MaLR 10 593 0 447 52 0 0 chr6 5002856 5002914 -177412328 + (TAGA)n Simple_repeat Simple_repeat 3 60 0 333 330 0 9 chr6 5003122 5003231 -177412011 - MIR SINE MIR -98 164 57 2547 58 0 0 chr6 5003340 5003648 -177411594 - AluY SINE Alu -3 308 1 1728 139 0 35 chr6 5004253 5004541 -177410701 + AluJb SINE Alu 1 278 -34 2304 70 0 0 chr6 5004719 5005017 -177410225 - AluY SINE Alu -9 302 5 269 270 14 0 chr6 5006062 5006136 -177409106 + (TG)n Simple_repeat Simple_repeat 1 75 0 608 248 56 47 chr6 5006155 5006369 -177408873 - L1ME1 LINE L1 -5 6161 5946 310 278 31 52 chr6 5007459 5007556 -177407686 + L1M4 LINE L1 5248 5342 -804 480 195 16 47 chr6 5007556 5007638 -177407604 + L1MB3 LINE L1 6058 6136 -47 768 179 0 8 chr6 5007638 5007772 -177407470 + FLAM_A SINE Alu 1 133 0 480 195 16 47 chr6 5007772 5007817 -177407425 + L1MB3 LINE L1 6136 6181 -2 23 54 0 0 chr6 5007817 5007854 -177407388 + AT_rich Low_complexity Low_complexity 1 37 0 2032 249 104 18 chr6 5007870 5008267 -177406975 + L1ME3A LINE L1 5290 5651 -519 1648 152 39 7 chr6 5008267 5008550 -177406692 + AluJo SINE Alu 1 292 -20 2032 249 104 18 chr6 5008550 5008938 -177406304 + L1ME3A LINE L1 5651 6152 -18 315 0 0 0 chr6 5008938 5008973 -177406269 + (TC)n Simple_repeat Simple_repeat 2 36 0 261 0 0 0 chr6 5008972 5009001 -177406241 + (TA)n Simple_repeat Simple_repeat 2 30 0 * 2083 115 0 0 chr6 5009001 5009297 -177405945 - AluSg SINE Alu -14 296 1 1800 158 0 0 chr6 5009353 5009631 -177405611 - AluSx SINE Alu -34 278 1 1767 174 0 0 chr6 5009666 5009965 -177405277 + AluSx SINE Alu 1 299 -13 2179 156 5 22 chr6 5010596 5010967 -177404275 - MLT1A1 LTR MaLR 0 365 1 652 242 27 13 chr6 5011037 5011186 -177404056 + MIR SINE MIR 84 234 -28 195 42 0 0 chr6 5011222 5011246 -177403996 + (ATG)n Simple_repeat Simple_repeat 3 26 0 330 302 12 0 chr6 5011274 5011360 -177403882 - L2 LINE L2 -189 3083 2997 237 65 0 0 chr6 5011378 5011409 -177403833 + (A)n Simple_repeat Simple_repeat 1 31 0 195 146 55 109 chr6 5011549 5011604 -177403638 - L3 LINE CR1 -1090 487 436 1000 156 22 11 chr6 5011971 5012151 -177403091 - MLT1B LTR MaLR -1 389 208 303 229 14 0 chr6 5012195 5012265 -177402977 + L1ME3A LINE L1 6031 6101 -69 1289 156 100 26 chr6 5012265 5012339 -177402903 - MLT1B LTR MaLR -101 289 222 294 29 0 0 chr6 5012339 5012374 -177402868 + (TA)n Simple_repeat Simple_repeat 2 36 0 1563 108 0 0 chr6 5012374 5012588 -177402654 - AluSg/x SINE Alu -27 285 72 1289 156 100 26 chr6 5012588 5012781 -177402461 - MLT1B LTR MaLR -167 223 1 1112 181 45 0 chr6 5013404 5013625 -177401617 + L1MB3 LINE L1 5915 6145 -38 1074 159 125 4 chr6 5013630 5013862 -177401380 + AluJb SINE Alu 40 299 -13 2118 102 3 3 chr6 5013923 5014216 -177401026 + AluSx SINE Alu 1 293 -19 5427 103 1 5 chr6 5016447 5017217 -177398025 - L1PB2 LINE L1 0 6151 5385 1271 67 0 0 chr6 5017217 5017382 -177397860 - AluY SINE Alu 0 311 147 6386 184 7 16 chr6 5017382 5018737 -177396505 - L1PB2 LINE L1 -745 5401 4059 265 281 45 11 chr6 5019137 5019226 -177396016 + MIR SINE MIR 155 246 -16 423 38 0 0 chr6 5019446 5019499 -177395743 + (TC)n Simple_repeat Simple_repeat 1 53 0 216 0 0 0 chr6 5019498 5019522 -177395720 + (CA)n Simple_repeat Simple_repeat 1 24 0 * 696 172 15 1 chr6 5019834 5019977 -177395265 + L1 LINE L1 3607 3756 -2390 3110 147 8 0 chr6 5020488 5020972 -177394270 + L1 LINE L1 3742 4229 -1917 272 259 0 0 chr6 5020991 5021049 -177394193 - AluSc SINE Alu -108 191 134 2261 103 3 0 chr6 5021055 5021365 -177393877 - AluSx SINE Alu -1 311 1 740 118 118 33 chr6 5021368 5021494 -177393748 - L1MB4 LINE L1 -213 5967 5824 2901 168 75 51 chr6 5021494 5022204 -177393038 - LTR8A LTR ERV1 0 727 1 740 118 118 33 chr6 5022204 5022230 -177393012 - L1MB4 LINE L1 -356 5824 5802 974 162 17 17 chr6 5022238 5022411 -177392831 + AluJo SINE Alu 85 257 -55 752 148 0 0 chr6 5022414 5022529 -177392713 + AluJb SINE Alu 198 312 0 401 353 77 23 chr6 5022536 5022641 -177392601 + MIR SINE MIR 30 128 -134 1958 216 59 22 chr6 5022641 5023182 -177392060 - MER34B LTR ERV1 0 565 5 401 353 77 23 chr6 5023182 5023297 -177391945 + MIR SINE MIR 128 262 0 2240 82 0 3 chr6 5023668 5023962 -177391280 - AluSc SINE Alu -16 293 1 2380 78 0 0 chr6 5025335 5025643 -177389599 - AluY SINE Alu -3 308 1 3594 163 123 101 chr6 5026356 5026784 -177388458 + L1MC3 LINE L1 6687 7104 -681 244 279 0 25 chr6 5026784 5026863 -177388379 + MLT1F1 LTR MaLR 45 121 -446 3594 163 123 101 chr6 5026863 5027347 -177387895 + L1MC3 LINE L1 7104 7705 -80 279 0 0 0 chr6 5027347 5027378 -177387864 + (TG)n Simple_repeat Simple_repeat 2 32 0 3594 163 123 101 chr6 5027378 5027448 -177387794 + L1MC3 LINE L1 7705 7772 -13 1846 166 0 20 chr6 5027449 5027745 -177387497 - AluJo SINE Alu -22 290 1 1431 212 42 31 chr6 5027901 5028260 -177386982 - MLT1A2 LTR MaLR -11 363 1 4401 195 45 57 chr6 5029108 5030204 -177385038 - L1MD2 LINE L1 -22 6320 5238 4441 229 93 40 chr6 5030204 5030396 -177384846 - L1MD2 LINE L1 -1332 4797 4617 189 0 0 0 chr6 5030396 5030417 -177384825 + (CA)n Simple_repeat Simple_repeat 2 22 0 4441 229 93 40 chr6 5030417 5031443 -177383799 - L1MD2 LINE L1 -1512 4617 3467 1657 189 14 0 chr6 5031443 5031728 -177383514 - AluJo SINE Alu -23 289 1 4441 229 93 40 chr6 5031728 5032162 -177383080 - L1MD2 LINE L1 -2662 3467 3057 588 203 74 0 chr6 5032149 5032297 -177382945 - L1MD2 LINE L1 -3302 2827 2669 * 799 251 38 13 chr6 5032418 5032653 -177382589 - L1MD2 LINE L1 -3450 2679 2439 2429 234 105 21 chr6 5032657 5032691 -177382551 - L1MD2 LINE L1 -3876 2434 2404 2251 107 117 35 chr6 5032691 5033003 -177382239 + MSTA LTR MaLR 1 353 -75 1766 137 20 93 chr6 5033003 5033346 -177381896 + AluYb8 SINE Alu 1 318 0 2251 107 117 35 chr6 5033346 5033427 -177381815 + MSTA LTR MaLR 353 426 -2 2429 234 105 21 chr6 5033427 5034205 -177381037 - L1MD2 LINE L1 -3906 2404 1554 351 239 104 33 chr6 5034199 5034485 -177380757 - L1MD2 LINE L1 -5088 1046 725 * 304 287 84 72 chr6 5034528 5034887 -177380355 - L1MD2 LINE L1 -5487 632 270 2280 23 0 0 chr6 5035089 5035351 -177379891 + L1PA4 LINE L1 5891 6152 -3 250 262 285 12 chr6 5035493 5035665 -177379577 + MIR SINE MIR 19 237 -25 22 0 0 0 chr6 5036004 5036026 -177379216 + AT_rich Low_complexity Low_complexity 1 22 0 1714 197 58 42 chr6 5037810 5038091 -177377151 + LTR40a LTR ERVL 82 374 -145 3279 151 30 0 chr6 5038091 5038590 -177376652 + MLT2B3 LTR ERVL 1 519 -35 261 0 0 0 chr6 5038590 5038619 -177376623 + (TCCA)n Simple_repeat Simple_repeat 2 30 0 3279 151 30 0 chr6 5038619 5038657 -177376585 + MLT2B3 LTR ERVL 519 554 0 1714 197 58 42 chr6 5038657 5038806 -177376436 + LTR40a LTR ERVL 374 519 0 21 0 0 0 chr6 5039524 5039545 -177375697 + AT_rich Low_complexity Low_complexity 1 21 0 2128 93 0 0 chr6 5040236 5040506 -177374736 - AluSc SINE Alu -4 305 36 2242 88 10 3 chr6 5041138 5041432 -177373810 - AluSx SINE Alu -16 296 1 281 365 0 0 chr6 5041755 5041925 -177373317 + (CAAG)n Simple_repeat Simple_repeat 1 170 0 436 220 136 0 chr6 5042124 5042242 -177373000 + MIR SINE MIR 97 230 -32 2662 33 3 0 chr6 5044011 5044318 -177370924 + AluY SINE Alu 1 308 -3 23 78 0 0 chr6 5044694 5044745 -177370497 + GC_rich Low_complexity Low_complexity 1 51 0 1095 147 101 150 chr6 5045999 5046305 -177368937 + AluJo SINE Alu 2 292 -10 2207 105 7 3 chr6 5046359 5046654 -177368588 + AluSx SINE Alu 1 296 -16 600 298 31 28 chr6 5047278 5047600 -177367642 + L2 LINE L2 2454 2776 -538 230 261 14 14 chr6 5047931 5048000 -177367242 + L1P LINE L1 2749 2817 -3329 2485 83 0 13 chr6 5048017 5048330 -177366912 + AluSc SINE Alu 1 309 0 2215 109 0 0 chr6 5048822 5049139 -177366103 + AluSx SINE Alu 1 317 0 1937 161 73 3 chr6 5049145 5049486 -177365756 + MLT1A1 LTR MaLR 1 365 0 1964 151 3 7 chr6 5049666 5049957 -177365285 + AluJo SINE Alu 1 290 -22 199 276 143 9 chr6 5050332 5050437 -177364805 - MIR SINE MIR -11 251 133 895 136 11 68 chr6 5050629 5050805 -177364437 - AluJb SINE Alu -18 294 129 1659 165 81 9 chr6 5051008 5051134 -177364108 - L1MB8 LINE L1 0 6178 6063 1702 125 42 42 chr6 5051134 5051422 -177363820 - AluJo SINE Alu -18 294 7 1659 165 81 9 chr6 5051422 5051640 -177363602 - L1MB8 LINE L1 -115 6063 5809 2101 129 0 0 chr6 5051712 5051991 -177363251 - AluSg SINE Alu -19 291 13 529 107 0 0 chr6 5052097 5052181 -177363061 - Alu SINE Alu 0 310 227 225 0 0 0 chr6 5052789 5052814 -177362428 + (TTTTG)n Simple_repeat Simple_repeat 2 26 0 758 142 0 0 chr6 5052828 5052948 -177362294 + L1MB2 LINE L1 6012 6131 -40 1469 152 9 4 chr6 5052949 5053179 -177362063 + AluJb SINE Alu 1 231 -81 478 104 30 0 chr6 5053211 5053278 -177361964 + AluJb SINE Alu 224 292 -20 273 47 116 0 chr6 5053280 5053323 -177361919 + L1MB2 LINE L1 6122 6169 -2 2060 153 3 0 chr6 5054112 5054407 -177360835 - AluJb SINE Alu -16 296 1 1752 159 33 0 chr6 5054683 5054954 -177360288 - AluJb SINE Alu -30 282 3 1798 234 121 10 chr6 5055210 5055697 -177359545 - MLT1H LTR MaLR 0 549 9 844 210 17 6 chr6 5056383 5056559 -177358683 + MER5B DNA MER1_type 1 178 0 2551 231 83 11 chr6 5057009 5057844 -177357398 - L1 LINE L1 -2478 3668 2774 1883 142 31 14 chr6 5057853 5058141 -177357101 - AluSx SINE Alu -19 293 1 489 70 28 28 chr6 5058145 5058216 -177357026 - Charlie1 DNA MER1_type -2011 750 680 18607 125 22 56 chr6 5058436 5061750 -177353492 - L1P LINE L1 -2934 3212 12 707 251 97 9 chr6 5061763 5062173 -177353069 - L1ME LINE L1 -678 5486 5045 955 143 0 0 chr6 5062309 5062442 -177352800 - FLAM_C SINE Alu -10 133 1 1592 179 98 29 chr6 5062445 5062701 -177352541 - L1MA4 LINE L1 -254 6046 5809 252 0 0 0 chr6 5062701 5062729 -177352513 + (TG)n Simple_repeat Simple_repeat 2 29 0 1592 179 98 29 chr6 5062729 5062762 -177352480 - L1MA4 LINE L1 -491 5809 5780 1697 149 0 0 chr6 5062762 5063004 -177352238 - AluSx SINE Alu -70 242 1 1592 179 98 29 chr6 5063004 5063092 -177352150 - L1MA4 LINE L1 -520 5780 5642 1524 190 104 41 chr6 5063095 5063168 -177352074 - HERVL74 LTR ERVL -4071 1614 1547 1902 142 0 23 chr6 5063168 5063495 -177351747 - AluSx SINE Alu 0 312 1 1524 190 104 41 chr6 5063495 5063836 -177351406 - HERVL74 LTR ERVL -4138 1547 1174 24 0 0 0 chr6 5063836 5063860 -177351382 + AT_rich Low_complexity Low_complexity 1 24 0 1548 158 17 45 chr6 5064108 5064430 -177350812 - AluJb SINE Alu 0 315 2 1955 135 7 4 chr6 5065801 5066082 -177349160 + AluJo SINE Alu 1 282 -30 241 156 16 16 chr6 5066087 5066151 -177349091 + GA-rich Low_complexity Low_complexity 2 65 0 200 250 0 59 chr6 5067766 5067834 -177347408 + MIR3 SINE MIR 114 177 -31 2082 72 7 65 chr6 5067853 5068057 -177347185 - AluSx SINE Alu 0 323 142 2093 129 0 19 chr6 5068057 5068375 -177346867 - AluSx SINE Alu 0 312 1 2082 72 7 65 chr6 5068375 5068502 -177346740 - AluSx SINE Alu -181 142 9 211 316 0 42 chr6 5068985 5069080 -177346162 - L2 LINE L2 -533 2781 2691 2165 100 3 7 chr6 5069101 5069390 -177345852 + AluSx SINE Alu 1 288 -24 225 0 0 0 chr6 5069390 5069415 -177345827 + (TGAA)n Simple_repeat Simple_repeat 1 25 0 257 111 0 0 chr6 5069415 5069451 -177345791 + Alu SINE Alu 253 288 -14 306 73 0 0 chr6 5069451 5069492 -177345750 + (TGAA)n Simple_repeat Simple_repeat 1 41 0 2519 146 16 81 chr6 5069587 5069637 -177345605 + L1MB7 LINE L1 5647 5699 -485 1947 188 14 3 chr6 5069637 5069998 -177345244 + MLT1A1 LTR MaLR 1 365 0 2519 146 16 81 chr6 5069998 5070502 -177344740 + L1MB7 LINE L1 5699 6165 -19 1500 181 28 11 chr6 5070536 5070823 -177344419 + AluJo SINE Alu 15 306 -6 181 336 105 14 chr6 5070840 5070983 -177344259 - L2 LINE L2 -711 2603 2448 320 317 19 0 chr6 5071766 5071870 -177343372 + MER3 DNA MER1_type 1 106 -103 912 144 139 16 chr6 5072407 5072601 -177342641 + MER20 DNA MER1_type 2 219 0 212 273 18 109 chr6 5073654 5073764 -177341478 + MIR3 SINE MIR 97 196 -12 283 244 12 12 chr6 5073816 5073902 -177341340 + CT-rich Low_complexity Low_complexity 2 87 0 205 217 116 74 chr6 5074465 5074654 -177340588 + L2 LINE L2 2555 2751 -563 1980 230 23 7 chr6 5074726 5075169 -177340073 - MER82 DNA MER2_type 0 653 204 2437 141 53 2 chr6 5075302 5075713 -177339529 + MSTB1 LTR MaLR 1 432 0 270 0 0 0 chr6 5075721 5075751 -177339491 + (T)n Simple_repeat Simple_repeat 1 30 0 544 262 28 14 chr6 5076065 5076206 -177339036 - MER82 DNA MER2_type -510 143 1 263 106 43 0 chr6 5076510 5076557 -177338685 + CT-rich Low_complexity Low_complexity 3 51 0 218 184 0 0 chr6 5076703 5076741 -177338501 + (TATG)n Simple_repeat Simple_repeat 3 40 0 188 290 48 0 chr6 5076846 5076908 -177338334 + L2 LINE L2 3239 3303 -10 519 237 9 0 chr6 5078255 5078369 -177336873 - L2 LINE L2 -3 3310 3196 693 279 44 24 chr6 5078688 5079097 -177336145 + L1M4 LINE L1 4596 5012 -1134 1299 125 36 10 chr6 5079097 5079289 -177335953 + AluJo SINE Alu 86 282 -30 453 115 0 0 chr6 5079294 5079381 -177335861 + (TAGA)n Simple_repeat Simple_repeat 4 90 0 970 128 0 0 chr6 5079405 5079538 -177335704 + FLAM_C SINE Alu 1 133 0 1251 153 8 16 chr6 5079538 5079780 -177335462 + L1MA4 LINE L1 6055 6294 -6 676 217 31 25 chr6 5079781 5079942 -177335300 + HERVL74 LTR ERVL 1610 1771 -3914 1101 111 6 19 chr6 5080001 5080163 -177335079 + AluSg/x SINE Alu 132 291 -18 1386 194 23 0 chr6 5081320 5081578 -177333664 + HERVL74 LTR ERVL 1765 2028 -3657 * 2387 194 52 61 chr6 5081566 5082219 -177333023 + HERVL74 LTR ERVL 4615 5261 -424 845 250 23 5 chr6 5082249 5082465 -177332777 + HERVL74 LTR ERVL 5376 5595 -90 1890 158 105 3 chr6 5082692 5083065 -177332177 + MER74A LTR ERVL 121 531 -27 2415 86 0 6 chr6 5083098 5083413 -177331829 - AluSq SINE Alu 0 313 1 294 211 0 0 chr6 5084059 5084111 -177331131 - MLT1H1 LTR MaLR -3 552 501 2460 156 10 2 chr6 5084111 5084528 -177330714 + L1MB3 LINE L1 5659 6078 -105 772 229 70 111 chr6 5085105 5085135 -177330107 - MLT1H1 LTR MaLR -37 518 488 2334 59 0 0 chr6 5085135 5085406 -177329836 - AluY SINE Alu -18 293 23 772 229 70 111 chr6 5085406 5085794 -177329448 - MLT1H1 LTR MaLR -67 488 106 1919 150 0 7 chr6 5085794 5086087 -177329155 + AluJb SINE Alu 5 295 -17 772 229 70 111 chr6 5086087 5086189 -177329053 - MLT1H1 LTR MaLR -449 106 1 428 247 0 22 chr6 5086265 5086354 -177328888 - MER81 DNA DNA -27 87 1 450 0 0 0 chr6 5087273 5087323 -177327919 + (TG)n Simple_repeat Simple_repeat 2 51 0 1200 157 47 120 chr6 5087327 5087626 -177327616 - AluJo SINE Alu -35 277 1 211 250 11 91 chr6 5088525 5088613 -177326629 + MIR SINE MIR 92 144 -64 2245 119 0 0 chr6 5088661 5088956 -177326286 - AluSg SINE Alu -15 295 1 8893 161 122 33 chr6 5089053 5090661 -177324581 + L1M4c LINE L1 31 1844 -4540 2203 143 41 48 chr6 5090661 5091096 -177324146 - MSTB1 LTR MaLR 0 432 1 8893 161 122 33 chr6 5091096 5091446 -177323796 + L1M4c LINE L1 1844 2162 -4222 745 183 0 29 chr6 5091449 5091586 -177323656 - FLAM_C SINE Alu 0 133 1 729 101 36 36 chr6 5091615 5091754 -177323488 + L1MB3 LINE L1 6044 6182 -1 220 277 24 12 chr6 5092388 5092471 -177322771 + GA-rich Low_complexity Low_complexity 1 84 0 1074 153 0 28 chr6 5092473 5092650 -177322592 + FRAM SINE Alu 5 176 0 442 343 78 0 chr6 5093188 5093407 -177321835 - MIR SINE MIR -7 255 20 5586 110 52 5 chr6 5093557 5094390 -177320852 + MER4D LTR ERV1 1 872 0 262 129 32 32 chr6 5094917 5094979 -177320263 + CT-rich Low_complexity Low_complexity 1 62 0 840 153 98 37 chr6 5094988 5095151 -177320091 - FAM SINE Alu 0 175 3 4126 198 41 13 chr6 5095158 5096062 -177319180 - Charlie1a DNA MER1_type -268 1187 259 738 205 12 58 chr6 5096066 5096237 -177319005 - Charlie1a DNA MER1_type -1291 164 2 2287 89 13 7 chr6 5096423 5096725 -177318517 + AluSx SINE Alu 1 304 -8 1920 112 45 17 chr6 5096753 5097040 -177318202 - AluJo SINE Alu -17 295 1 1823 178 0 0 chr6 5098047 5098350 -177316892 + AluJo SINE Alu 1 303 -9 543 211 181 15 chr6 5098592 5098791 -177316451 + LTR48 LTR ERV1 490 721 -66 1037 152 0 18 chr6 5098791 5098956 -177316286 - FRAM SINE Alu -15 161 1 482 133 13 0 chr6 5098956 5099031 -177316211 + LTR49 LTR ERV1 520 595 0 496 283 122 5 chr6 5099041 5099246 -177315996 - L1MC/D LINE L1 -2021 5787 5559 1907 133 0 84 chr6 5099487 5099819 -177315423 - AluSx SINE Alu -8 304 1 571 189 28 56 chr6 5100310 5100453 -177314789 + Tigger8 DNA MER2_type 154 292 -374 298 280 93 47 chr6 5100588 5100824 -177314418 + L1MEd LINE L1 496 742 -5377 1207 141 6 0 chr6 5101067 5101244 -177313998 - AluJo SINE Alu -3 309 132 281 189 44 0 chr6 5101245 5101335 -177313907 + (TA)n Simple_repeat Simple_repeat 2 95 0 660 122 122 0 chr6 5101336 5101443 -177313799 - FLAM_C SINE Alu -13 120 1 641 208 63 35 chr6 5103344 5103564 -177311678 - L1MC2 LINE L1 -1 6343 6159 714 194 0 16 chr6 5103566 5103695 -177311547 - AluJo SINE Alu -184 128 2 2397 154 67 29 chr6 5103702 5104292 -177310950 - L1MC2 LINE L1 -2 6298 5721 48 43 0 0 chr6 5104296 5104365 -177310877 + AT_rich Low_complexity Low_complexity 1 69 0 21 0 0 0 chr6 5106033 5106054 -177309188 + AT_rich Low_complexity Low_complexity 1 21 0 1527 207 200 18 chr6 5106219 5106673 -177308569 - MLT1F LTR MaLR -3 539 3 558 53 13 0 chr6 5107712 5107787 -177307455 + L1PA5 LINE L1 6079 6154 0 2255 98 6 3 chr6 5107793 5108120 -177307122 - HSMAR2 DNA Mariner -970 332 5 761 171 32 21 chr6 5108181 5108368 -177306874 - Charlie1 DNA MER1_type -7 2754 2566 517 228 19 84 chr6 5108408 5108445 -177306797 + L2 LINE L2 3113 3151 -162 197 33 33 0 chr6 5108445 5108475 -177306767 + (TA)n Simple_repeat Simple_repeat 2 32 0 2249 92 14 3 chr6 5108475 5108770 -177306472 - AluSc SINE Alu -11 298 1 517 228 19 84 chr6 5108770 5108946 -177306296 + L2 LINE L2 3149 3313 0 408 261 96 50 chr6 5108982 5109181 -177306061 - MIR SINE MIR -26 236 29 314 252 36 58 chr6 5109367 5109506 -177305736 + L1ME4a LINE L1 5978 6113 -8 1653 182 27 3 chr6 5109585 5109882 -177305360 + AluJo SINE Alu 1 304 -8 2194 103 7 3 chr6 5109902 5110194 -177305048 + AluSg SINE Alu 2 294 -16 21 0 0 0 chr6 5110326 5110347 -177304895 + AT_rich Low_complexity Low_complexity 1 21 0 438 236 0 0 chr6 5110432 5110521 -177304721 - MER96B DNA MER1_type? 0 417 329 564 178 0 0 chr6 5110534 5110641 -177304601 + (TG)n Simple_repeat Simple_repeat 2 108 0 2074 101 0 24 chr6 5110649 5110936 -177304306 - AluSx SINE Alu -32 280 1 4725 88 5 0 chr6 5110936 5111559 -177303683 - L1PA11 LINE L1 -135 6039 5414 684 89 0 0 chr6 5111568 5111658 -177303584 - AluSp/q SINE Alu -11 302 213 685 159 119 99 chr6 5111764 5112016 -177303226 - MER69 DNA AcHobo -5 2521 2265 1606 126 56 34 chr6 5112085 5112354 -177302888 + AluSx SINE Alu 1 275 -37 31 0 0 0 chr6 5112355 5112386 -177302856 + AT_rich Low_complexity Low_complexity 1 31 0 255 133 22 44 chr6 5112470 5112605 -177302637 + (TA)n Simple_repeat Simple_repeat 1 132 0 240 283 152 0 chr6 5112748 5112886 -177302356 - MLT1E LTR MaLR -398 195 37 472 277 32 27 chr6 5112903 5113212 -177302030 - MER69 DNA AcHobo -2080 446 95 225 0 0 0 chr6 5113389 5113414 -177301828 + (T)n Simple_repeat Simple_repeat 1 25 0 1027 138 27 43 chr6 5113421 5113609 -177301633 + Tigger1 DNA MER2_type 1625 1809 -609 567 53 0 0 chr6 5113615 5113691 -177301551 - L1PA6 LINE L1 0 6154 6079 195 162 0 0 chr6 5113771 5113808 -177301434 + (ATGGTG)n Simple_repeat Simple_repeat 5 41 0 2610 133 36 2 chr6 5113828 5114242 -177301000 + MSTA LTR MaLR 1 428 0 237 79 0 0 chr6 5114734 5114772 -177300470 - L1MB3 LINE L1 -2 6181 6144 1959 138 0 26 chr6 5114933 5115237 -177300005 - AluJb SINE Alu -16 296 1 268 317 62 21 chr6 5115352 5115497 -177299745 + MIR SINE MIR 20 170 -92 266 344 61 0 chr6 5115659 5115790 -177299452 + MER20 DNA MER1_type 55 193 -26 291 302 128 23 chr6 5115865 5116037 -177299205 - MLT1L LTR MaLR -204 411 222 298 286 114 23 chr6 5117310 5117485 -177297757 + MIR SINE MIR 28 218 -44 30 27 0 0 chr6 5117910 5117947 -177297295 + AT_rich Low_complexity Low_complexity 1 37 0 1744 212 48 75 chr6 5117967 5118524 -177296718 - MER34 LTR ERV1 0 542 1 545 181 296 35 chr6 5119835 5120034 -177295208 + MLT1G1 LTR MaLR 340 595 0 367 283 33 7 chr6 5120438 5120590 -177294652 + L2 LINE L2 2006 2161 -1153 301 284 0 0 chr6 5120617 5120684 -177294558 + MER21B LTR ERV1 13 79 -784 1274 227 89 20 chr6 5120775 5121342 -177293900 + MER21B LTR ERV1 98 834 -97 244 373 85 27 chr6 5121346 5121759 -177293483 + L2 LINE L2 2334 2770 -544 344 190 25 13 chr6 5122092 5122171 -177293071 - MER96 DNA MER1_type? -90 85 6 384 131 131 164 chr6 5122888 5122980 -177292262 + MER5A DNA MER1_type 13 98 -91 682 172 0 8 chr6 5122980 5123102 -177292140 + FLAM_A SINE Alu 1 121 -12 384 131 131 164 chr6 5123102 5123192 -177292050 + MER5A DNA MER1_type 98 189 0 21 71 0 0 chr6 5124179 5124221 -177291021 + GC_rich Low_complexity Low_complexity 1 42 0 1441 182 22 80 chr6 5126975 5127084 -177288158 + MER58B DNA MER1_type 1 115 -2305 2330 103 3 0 chr6 5127084 5127386 -177287856 - AluSq SINE Alu -10 303 1 1441 182 22 80 chr6 5127386 5127638 -177287604 + MER58B DNA MER1_type 115 341 0 21 36 0 0 chr6 5128321 5128349 -177286893 + AT_rich Low_complexity Low_complexity 1 28 0 293 0 27 0 chr6 5129007 5129044 -177286198 + (CA)n Simple_repeat Simple_repeat 2 39 0 2157 104 0 27 chr6 5131421 5131718 -177283524 + AluSg SINE Alu 1 289 -21 1844 180 0 7 chr6 5133191 5133497 -177281745 + AluJo SINE Alu 1 304 -8 1494 150 42 0 chr6 5133829 5134116 -177281126 + L1MA4 LINE L1 5997 6295 -5 413 225 167 8 chr6 5134137 5134257 -177280985 + MER20 DNA MER1_type 50 188 -31 2379 148 13 3 chr6 5134259 5134651 -177280591 - MER57A LTR ERV1 0 403 8 2128 118 0 7 chr6 5134687 5135006 -177280236 + AluSx SINE Alu 1 317 0 614 225 13 13 chr6 5135011 5135162 -177280080 + L1MC4a LINE L1 7657 7807 -1 1910 167 10 0 chr6 5135203 5135497 -177279745 + AluJo SINE Alu 5 301 -11 285 304 73 42 chr6 5135570 5135761 -177279481 + MIR SINE MIR 14 210 -52 1554 155 0 0 chr6 5136000 5136245 -177278997 - MSTC LTR MaLR -2 426 182 531 103 0 0 chr6 5136260 5136328 -177278914 - AluJ/FRAM SINE Alu -27 285 218 1750 158 7 31 chr6 5136350 5136642 -177278600 - AluJo SINE Alu -27 285 1 823 143 7 7 chr6 5136647 5136794 -177278448 - MSTC LTR MaLR -281 147 1 693 184 8 16 chr6 5136989 5137114 -177278128 - FLAM_A SINE Alu -9 124 1 489 245 123 0 chr6 5137477 5137632 -177277610 + L1ME LINE L1 5566 5739 -431 1661 164 0 18 chr6 5138198 5138374 -177276868 - AluJb SINE Alu -16 296 125 360 43 0 0 chr6 5138374 5138420 -177276822 + (TCTA)n Simple_repeat Simple_repeat 4 49 0 1661 164 0 18 chr6 5138420 5138517 -177276725 - AluJb SINE Alu -187 125 28 831 167 0 0 chr6 5138601 5138733 -177276509 - FLAM_C SINE Alu 0 133 2 424 216 104 16 chr6 5138735 5138860 -177276382 - MIR SINE MIR -112 150 15 180 289 84 73 chr6 5139773 5140046 -177275196 + L2 LINE L2 2400 2675 -639 501 304 87 11 chr6 5140371 5140555 -177274687 - MIR SINE MIR -6 256 59 228 227 0 0 chr6 5140660 5140704 -177274538 - MIR SINE MIR -114 94 51 1317 177 92 44 chr6 5140790 5141084 -177274158 - AluJo SINE Alu -4 308 1 2185 106 7 13 chr6 5142622 5142925 -177272317 - AluSg SINE Alu -7 303 3 2080 144 0 3 chr6 5143269 5143567 -177271675 - AluJb SINE Alu -15 297 1 213 257 9 64 chr6 5143758 5143867 -177271375 + L2 LINE L2 2426 2528 -786 233 279 25 0 chr6 5144098 5144177 -177271065 - MLT1H LTR MaLR 0 549 469 417 298 198 49 chr6 5144377 5144522 -177270720 + L2 LINE L2 2569 2691 -581 2259 94 0 3 chr6 5144522 5144832 -177270410 + AluSx SINE Alu 1 309 0 417 298 198 49 chr6 5144832 5145291 -177269951 + L2 LINE L2 2691 3272 0 2020 82 78 4 chr6 5146737 5147006 -177268236 + AluSg SINE Alu 1 289 -21 267 288 49 103 chr6 5147458 5147642 -177267600 + MER5B DNA MER1_type 1 174 -4 382 222 25 0 chr6 5147709 5147790 -177267452 - MER5A DNA MER1_type -82 107 25 310 241 25 0 chr6 5149828 5149907 -177265335 - MER5A DNA MER1_type -100 89 9 431 255 221 7 chr6 5150449 5150598 -177264644 + L3 LINE CR1 1392 1572 -5 316 245 116 54 chr6 5150759 5150906 -177264336 + MIR3 SINE MIR 41 196 -12 281 237 96 74 chr6 5151234 5151369 -177263873 + L2 LINE L2 3133 3270 -2 1846 132 55 4 chr6 5152148 5152421 -177262821 + AluSg SINE Alu 5 291 -19 974 129 0 0 chr6 5152725 5152857 -177262385 - FLAM_A SINE Alu -1 132 1 767 255 45 52 chr6 5153149 5153416 -177261826 + MLT1J LTR MaLR 243 507 -4 1647 58 44 26 chr6 5153631 5153857 -177261385 + MER30 DNA MER1_type 1 230 0 777 273 124 12 chr6 5153889 5154292 -177260950 - L1ME4a LINE L1 -118 6003 5556 208 184 0 61 chr6 5155004 5155053 -177260189 + MIR SINE MIR 204 249 -13 2312 77 28 0 chr6 5156266 5156552 -177258690 + AluSc SINE Alu 1 294 -15 1023 160 0 0 chr6 5156724 5156874 -177258368 + FAM SINE Alu 12 161 -24 1954 137 0 27 chr6 5157087 5157408 -177257834 - AluSx SINE Alu 0 313 1 2066 147 3 10 chr6 5158496 5158810 -177256432 + AluSx SINE Alu 1 312 0 2042 122 21 7 chr6 5158899 5159186 -177256056 - AluSg SINE Alu -19 291 1 801 137 24 0 chr6 5159364 5159488 -177255754 - LTR12 LTR ERV1 -229 485 359 268 236 0 0 chr6 5159488 5159560 -177255682 - LTR30 LTR ERV1 -98 624 553 1465 134 23 23 chr6 5159561 5159863 -177255379 - LTR12 LTR ERV1 -406 2032 55 268 211 0 0 chr6 5159863 5159915 -177255327 - LTR30 LTR ERV1 -670 52 1 431 191 0 0 chr6 5163304 5163372 -177251870 - AluJ/FLAM SINE Alu -243 69 2 219 289 24 24 chr6 5163781 5163864 -177251378 - MER5B DNA MER1_type -74 104 22 * 234 289 88 69 chr6 5163846 5164005 -177251237 + L2 LINE L2 3070 3231 -41 199 299 26 26 chr6 5164154 5164231 -177251011 + L2 LINE L2 2678 2754 -560 185 270 324 0 chr6 5164396 5164507 -177250735 + L2 LINE L2 3126 3272 0 2446 159 30 13 chr6 5165477 5165948 -177249294 + L1MB7 LINE L1 5645 6123 -61 2148 119 14 0 chr6 5165948 5166241 -177249001 - AluSx SINE Alu -15 297 1 989 113 0 0 chr6 5166243 5166376 -177248866 - AluJb SINE Alu -179 133 1 268 143 79 0 chr6 5166376 5166439 -177248803 + L1MB8 LINE L1 6111 6178 0 1010 186 64 25 chr6 5166512 5166792 -177248450 + MER33 DNA MER1_type 31 321 -3 690 217 7 0 chr6 5166898 5167050 -177248192 - L1MD2 LINE L1 -15 6344 6192 2147 200 47 12 chr6 5168234 5168720 -177246522 - MLT1D LTR MaLR 0 505 3 380 339 155 16 chr6 5170051 5170361 -177244881 + L1 LINE L1 2266 2618 -3528 849 173 0 0 chr6 5170409 5170542 -177244700 + FLAM_C SINE Alu 1 133 0 305 198 151 47 chr6 5170792 5170878 -177244364 + L1ME4a LINE L1 5801 5895 -226 279 339 48 60 chr6 5171156 5171404 -177243838 - MIR SINE MIR 0 262 18 195 42 0 0 chr6 5171405 5171429 -177243813 + (CAAAAA)n Simple_repeat Simple_repeat 2 25 0 564 270 68 0 chr6 5172464 5172593 -177242649 - MER5B DNA MER1_type 0 178 34 2893 174 56 18 chr6 5172593 5173197 -177242045 - L1MB5 LINE L1 -6 6168 5542 564 270 68 0 chr6 5173197 5173230 -177242012 - MER5B DNA MER1_type -144 34 5 470 221 164 64 chr6 5173284 5173755 -177241487 + L1MC5 LINE L1 7398 7915 -46 2890 173 50 4 chr6 5174734 5175279 -177239963 - L1MB3 LINE L1 -10 6173 5604 498 280 156 9 chr6 5175381 5175599 -177239643 + MIR SINE MIR 1 250 -12 2909 182 18 2 chr6 5175819 5176369 -177238873 - L1MB7 LINE L1 -9 6175 5617 2093 149 0 9 chr6 5177193 5177508 -177237734 + AluJb SINE Alu 1 312 0 367 321 51 36 chr6 5177997 5178193 -177237049 - MIR SINE MIR 0 262 64 1510 156 57 4 chr6 5178525 5178788 -177236454 + MER57A LTR ERV1 1 277 -126 1016 138 33 0 chr6 5178828 5178980 -177236262 - AluJb SINE Alu -11 301 145 1576 142 24 0 chr6 5178986 5179233 -177236009 + AluJb SINE Alu 44 296 -16 658 202 8 0 chr6 5179234 5179363 -177235879 + MER57A LTR ERV1 274 403 0 340 125 0 31 chr6 5179724 5179788 -177235454 + L1MB4 LINE L1 6119 6180 0 307 239 86 0 chr6 5180273 5180388 -177234854 + MIR3 SINE MIR 51 176 -32 189 337 22 11 chr6 5180558 5180650 -177234592 - MIR3 SINE MIR -12 196 104 264 291 93 0 chr6 5180840 5180926 -177234316 - MIR3 SINE MIR -52 156 63 1135 218 201 43 chr6 5181092 5181560 -177233682 + MLT1G LTR MaLR 36 577 -13 2385 67 40 0 chr6 5183347 5183646 -177231596 + AluY SINE Alu 1 311 0 285 288 0 0 chr6 5184361 5184434 -177230808 - MIR SINE MIR -86 176 104 213 39 0 0 chr6 5184871 5184897 -177230345 + (CATTC)n Simple_repeat Simple_repeat 1 26 0 212 242 16 121 chr6 5185365 5185489 -177229753 - MIR SINE MIR -108 154 44 302 310 37 43 chr6 5185580 5185767 -177229475 + MLT1L LTR MaLR 105 290 -325 198 0 0 0 chr6 5187654 5187676 -177227566 + (TC)n Simple_repeat Simple_repeat 2 23 0 258 226 70 50 chr6 5188386 5188517 -177226725 - MIR SINE MIR -63 145 13 474 228 174 11 chr6 5189385 5189569 -177225673 + MIR SINE MIR 47 260 -2 2340 89 0 13 chr6 5190061 5190374 -177224868 - AluSc SINE Alu 0 309 1 430 300 80 34 chr6 5190613 5190850 -177224392 + MIR SINE MIR 2 249 -13 271 302 70 31 chr6 5190930 5191059 -177224183 + L2 LINE L2 3179 3312 -1 348 208 56 83 chr6 5191088 5191232 -177224010 - MIR3 SINE MIR -2 206 67 1798 150 25 0 chr6 5192095 5192381 -177222861 - AluSx SINE Alu -18 294 2 257 234 26 13 chr6 5192506 5192583 -177222659 + MIR SINE MIR 83 160 -102 2412 66 0 25 chr6 5193526 5193845 -177221397 + AluY SINE Alu 1 311 0 197 253 121 24 chr6 5193849 5193932 -177221310 - MIR SINE MIR -88 120 30 2083 123 7 3 chr6 5194070 5194372 -177220870 - AluSx SINE Alu -9 303 1 189 195 0 0 chr6 5197043 5197084 -177218158 + GA-rich Low_complexity Low_complexity 4 44 0 330 298 8 24 chr6 5197103 5197227 -177218015 + (TATG)n Simple_repeat Simple_repeat 2 123 0 2062 134 17 3 chr6 5197465 5197764 -177217478 - AluJo SINE Alu -9 303 1 267 255 37 85 chr6 5198335 5198523 -177216719 - L2 LINE L2 -1260 2054 1876 2003 91 53 138 chr6 5199348 5199745 -177215497 + THE1B LTR MaLR 2 364 0 29 47 0 0 chr6 5200132 5200175 -177215067 + AT_rich Low_complexity Low_complexity 1 43 0 204 261 0 0 chr6 5201185 5201231 -177214011 + MER5B DNA MER1_type 108 153 -25 303 136 0 0 chr6 5201465 5201524 -177213718 + (GA)n Simple_repeat Simple_repeat 2 60 0 1642 289 77 24 chr6 5201837 5202612 -177212630 - L1M LINE L1 -754 5392 4587 2078 102 53 0 chr6 5202612 5202897 -177212345 - AluSx SINE Alu -12 300 1 1642 289 77 24 chr6 5202897 5202991 -177212251 - L1M LINE L1 -1559 4587 4499 * 1884 251 93 29 chr6 5202989 5203674 -177211568 + L1ME3A LINE L1 5375 6103 -67 2367 106 0 0 chr6 5203677 5203979 -177211263 + AluSx SINE Alu 1 302 -10 2315 112 0 6 chr6 5204520 5204834 -177210408 - AluSx SINE Alu 0 312 1 24 91 0 0 chr6 5205005 5205071 -177210171 + AT_rich Low_complexity Low_complexity 1 66 0 183 203 95 14 chr6 5205576 5205650 -177209592 - MIR SINE MIR -71 191 112 442 242 11 0 chr6 5205918 5206009 -177209233 - AluJ/FLAM SINE Alu -219 93 2 1938 237 124 61 chr6 5206922 5207876 -177207366 + L1MC4 LINE L1 6891 7904 -138 234 176 59 0 chr6 5207942 5208010 -177207232 + L1MC4 LINE L1 7931 8002 -40 697 197 0 23 chr6 5208087 5208219 -177207023 - FLAM_A SINE Alu -4 129 1 307 244 122 0 chr6 5208493 5208575 -177206667 + MER82 DNA MER2_type 556 647 -6 252 0 0 0 chr6 5209474 5209502 -177205740 + (TTTA)n Simple_repeat Simple_repeat 1 28 0 930 70 0 0 chr6 5209505 5209619 -177205623 - AluSg/x SINE Alu -25 287 174 475 265 111 17 chr6 5209739 5209920 -177205322 + L1ME LINE L1 5585 5782 -339 1039 245 119 14 chr6 5214589 5215059 -177200183 + MLT1G LTR MaLR 1 548 -42 2375 102 0 0 chr6 5215059 5215354 -177199888 - AluSg SINE Alu -15 295 1 431 300 50 7 chr6 5217011 5217151 -177198091 + L2 LINE L2 3119 3264 -8 429 205 32 3 chr6 5217158 5217329 -177197913 - MARNA DNA Mariner -197 389 161 21 0 0 0 chr6 5217438 5217459 -177197783 + AT_rich Low_complexity Low_complexity 1 21 0 2387 80 30 0 chr6 5217523 5217825 -177197417 + AluSx SINE Alu 1 311 -1 297 125 0 0 chr6 5218034 5218090 -177197152 + (A)n Simple_repeat Simple_repeat 1 56 0 275 127 0 18 chr6 5218144 5218199 -177197043 - L1MB4 LINE L1 0 6180 6127 3053 151 21 36 chr6 5218220 5218836 -177196406 - L1MB3 LINE L1 0 6183 5577 314 287 129 25 chr6 5220747 5220949 -177194293 + L2 LINE L2 2154 2376 -938 1223 155 33 0 chr6 5222827 5223040 -177192202 + L1MA8 LINE L1 6062 6281 -10 21 36 0 0 chr6 5223533 5223561 -177191681 + AT_rich Low_complexity Low_complexity 1 28 0 290 273 152 0 chr6 5223697 5223796 -177191446 - L2 LINE L2 0 3272 3159 207 100 0 0 chr6 5224195 5224225 -177191017 + (TGAA)n Simple_repeat Simple_repeat 3 32 0 362 243 135 9 chr6 5224620 5224731 -177190511 - MIR SINE MIR -130 132 8 231 232 73 66 chr6 5225444 5225595 -177189647 + L1PA6 LINE L1 4897 5048 -1098 2294 112 0 0 chr6 5225694 5225990 -177189252 + AluSx SINE Alu 2 297 -15 2376 172 103 4 chr6 5226269 5226758 -177188484 + L1PA6 LINE L1 5603 6154 0 304 269 15 75 chr6 5226758 5226892 -177188350 + L1MC4a LINE L1 5811 5936 -1872 1528 157 71 31 chr6 5227058 5227181 -177188061 + AluJb SINE Alu 1 118 -194 204 97 0 0 chr6 5227181 5227212 -177188030 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 1528 157 71 31 chr6 5227212 5227382 -177187860 + AluJb SINE Alu 118 306 -6 454 251 199 9 chr6 5227545 5227756 -177187486 + MIR SINE MIR 12 262 0 1849 137 18 7 chr6 5227767 5228044 -177187198 - AluJb SINE Alu -24 288 9 312 328 12 12 chr6 5228249 5228420 -177186822 + (TTAGGG)n Simple_repeat Simple_repeat 3 173 0 25 51 0 0 chr6 5229432 5229471 -177185771 + AT_rich Low_complexity Low_complexity 1 39 0 685 235 133 0 chr6 5229574 5229740 -177185502 + Tigger3(Golem) DNA MER2_type 1 188 -2841 357 313 137 16 chr6 5230006 5230255 -177184987 + L1ME4a LINE L1 5617 5895 -226 1243 244 217 6 chr6 5230624 5231099 -177184143 + L1MC4 LINE L1 7154 7728 -314 2227 101 7 0 chr6 5231735 5232031 -177183211 + AluSx SINE Alu 1 298 -14 378 93 0 0 chr6 5233014 5233068 -177182174 - MLT2D LTR ERVL 0 414 361 210 273 91 0 chr6 5233494 5233560 -177181682 + MIR SINE MIR 119 190 -72 1148 137 6 0 chr6 5233718 5233879 -177181363 - FRAM SINE Alu -4 162 1 269 303 18 55 chr6 5233949 5234114 -177181128 - Charlie7 DNA MER1_type 0 2612 2454 1931 115 3 78 chr6 5234320 5234651 -177180591 + AluSx SINE Alu 1 306 -6 343 235 12 71 chr6 5234786 5234871 -177180371 + L2 LINE L2 3132 3211 -61 413 301 92 5 chr6 5234950 5235156 -177180086 - MIR SINE MIR -3 259 36 363 273 56 37 chr6 5235395 5235556 -177179686 + MIR SINE MIR 13 176 -86 2287 100 0 10 chr6 5236383 5236694 -177178548 + AluSg1 SINE Alu 1 308 -1 2099 94 3 82 chr6 5236882 5237213 -177178029 + AluSq SINE Alu 2 306 -7 3779 147 75 22 chr6 5237847 5238540 -177176702 + L1MB8 LINE L1 5444 6173 -5 629 224 141 0 chr6 5239708 5239864 -177175378 - MER5B DNA MER1_type 0 178 1 23 54 0 0 chr6 5239988 5240025 -177175217 + AT_rich Low_complexity Low_complexity 1 37 0 374 233 20 130 chr6 5240832 5240978 -177174264 + MIR SINE MIR 20 149 -59 459 322 93 14 chr6 5242954 5243168 -177172074 - MIR SINE MIR -13 249 19 384 211 44 26 chr6 5243405 5243519 -177171723 + MER4C LTR ERV1 1 116 -349 810 220 39 35 chr6 5243538 5243811 -177171431 + MER4C LTR ERV1 278 465 0 351 210 210 14 chr6 5245197 5245335 -177169907 - MIR3 SINE MIR -7 201 37 267 313 111 14 chr6 5245695 5245839 -177169403 + MIR SINE MIR 77 234 -28 218 314 110 25 chr6 5245909 5246027 -177169215 - MIR3 SINE MIR -68 140 13 2015 136 0 10 chr6 5246763 5247057 -177168185 - AluSx SINE Alu -5 307 17 363 303 18 9 chr6 5247957 5248066 -177167176 - MIR3 SINE MIR -8 200 91 2641 153 27 0 chr6 5248188 5248634 -177166608 - L1MB2 LINE L1 -3 6168 5711 658 275 113 17 chr6 5249484 5249823 -177165419 + L1ME LINE L1 5388 5780 -341 2127 115 7 0 chr6 5249853 5250140 -177165102 + AluSq SINE Alu 1 289 -24 2292 89 3 16 chr6 5250142 5250458 -177164784 + AluSx SINE Alu 1 312 0 867 293 168 55 chr6 5250607 5251217 -177164025 - L1MC4a LINE L1 -376 5802 5271 2332 77 28 0 chr6 5251565 5251852 -177163390 - AluSp SINE Alu -18 295 1 247 356 46 31 chr6 5252254 5252577 -177162665 - L2 LINE L2 -954 2360 2033 5168 69 15 14 chr6 5252672 5253326 -177161916 + L1PA8 LINE L1 5514 6168 -4 328 259 55 82 chr6 5253407 5253456 -177161786 + L1M4 LINE L1 2879 2928 -3218 2056 141 0 3 chr6 5253456 5253753 -177161489 - AluSx SINE Alu -16 296 1 328 259 55 82 chr6 5253753 5253894 -177161348 + L1M4 LINE L1 2928 3065 -3081 2560 55 0 13 chr6 5253894 5254205 -177161037 + AluY SINE Alu 1 307 -4 328 259 55 82 chr6 5254205 5254233 -177161009 + L1M4 LINE L1 3065 3092 -3054 22 0 0 0 chr6 5255706 5255728 -177159514 + AT_rich Low_complexity Low_complexity 1 22 0 21 0 0 0 chr6 5255760 5255781 -177159461 + AT_rich Low_complexity Low_complexity 1 21 0 338 113 9 12 chr6 5256170 5256401 -177158841 + AluSq SINE Alu 1 302 0 761 151 17 0 chr6 5258831 5258950 -177156292 - FLAM_A SINE Alu -12 121 1 21 0 0 0 chr6 5259301 5259322 -177155920 + AT_rich Low_complexity Low_complexity 1 21 0 209 289 134 31 chr6 5259679 5259776 -177155466 - L2 LINE L2 -188 3084 2978 1094 127 6 35 chr6 5260328 5260501 -177154741 - AluSg/x SINE Alu -22 290 123 2384 99 0 0 chr6 5261358 5261661 -177153581 + AluSx SINE Alu 1 303 -9 1814 145 7 37 chr6 5261841 5262137 -177153105 + AluJo SINE Alu 1 287 -25 3617 99 73 4 chr6 5262304 5262797 -177152445 + MER1A DNA MER1_type 1 527 0 451 315 62 6 chr6 5266188 5266366 -177148876 + MIR SINE MIR 61 248 -14 207 339 66 25 chr6 5266388 5266509 -177148733 + MIR SINE MIR 131 256 -6 583 244 0 8 chr6 5266811 5266934 -177148308 + L2 LINE L2 3192 3313 0 2349 84 0 7 chr6 5267250 5267547 -177147695 - AluSc SINE Alu -14 295 1 1986 119 7 3 chr6 5267613 5267899 -177147343 + AluSq SINE Alu 1 287 -26 2842 10 0 0 chr6 5267942 5268248 -177146994 - AluYb8 SINE Alu -12 306 1 23 54 0 0 chr6 5268886 5268923 -177146319 + AT_rich Low_complexity Low_complexity 1 37 0 2058 162 40 0 chr6 5269216 5269567 -177145675 + MER47A DNA MER2_type 2 366 0 216 0 0 0 chr6 5270265 5270289 -177144953 + (A)n Simple_repeat Simple_repeat 1 24 0 459 0 0 0 chr6 5270289 5270340 -177144902 + (TA)n Simple_repeat Simple_repeat 1 51 0 201 289 84 12 chr6 5270576 5270659 -177144583 - L2 LINE L2 -38 3275 3187 284 333 81 43 chr6 5271243 5271453 -177143789 - L2 LINE L2 -212 3060 2843 186 313 70 26 chr6 5271542 5271657 -177143585 + MIR SINE MIR 15 134 -128 248 333 61 12 chr6 5271973 5272138 -177143104 - L2 LINE L2 -1015 2299 2127 201 318 34 62 chr6 5273362 5273541 -177141701 + L2 LINE L2 2477 2650 -664 365 288 70 109 chr6 5273784 5274097 -177141145 + L2 LINE L2 2967 3267 -5 31 82 0 0 chr6 5275342 5275415 -177139827 + AT_rich Low_complexity Low_complexity 1 73 0 2924 113 57 2 chr6 5276511 5276917 -177138325 - MSTA LTR MaLR 0 428 1 286 259 82 0 chr6 5277453 5277538 -177137704 + MIR SINE MIR 32 123 -85 255 261 85 54 chr6 5277605 5277735 -177137507 + L2 LINE L2 2862 2995 -318 274 298 145 21 chr6 5277928 5278163 -177137079 + MLT1J LTR MaLR 242 505 -6 8844 103 52 2 chr6 5278485 5279709 -177135533 + HSMAR1 DNA Mariner 1 1285 -2 188 219 146 0 chr6 5279714 5279755 -177135487 - L2 LINE L2 -42 3230 3184 1445 208 153 2 chr6 5280362 5280786 -177134456 + Charlie1b DNA MER1_type 34 521 -2 733 184 247 0 chr6 5280887 5281061 -177134181 - MER20 DNA MER1_type -1 218 2 282 290 0 0 chr6 5281129 5281191 -177134051 - MIR SINE MIR -12 250 189 348 215 0 0 chr6 5281208 5281273 -177133969 + MER20 DNA MER1_type 154 218 -1 2461 96 0 0 chr6 5281383 5281696 -177133546 + AluSq SINE Alu 1 313 0 299 100 0 0 chr6 5281710 5281750 -177133492 - Charlie1 DNA MER1_type -2 2759 2720 322 217 126 51 chr6 5281751 5281909 -177133333 - MIR3 SINE MIR -61 147 1 * 420 317 108 67 chr6 5281909 5282508 -177132734 + L2 LINE L2 2304 2929 -385 2304 106 59 12 chr6 5282698 5283020 -177132222 + MER1B DNA MER1_type 1 337 0 336 352 87 27 chr6 5283153 5283372 -177131870 - L2 LINE L2 -222 3050 2819 517 283 62 6 chr6 5283514 5283691 -177131551 + MIR SINE MIR 76 262 0 445 230 30 0 chr6 5284162 5284262 -177130980 - MIR3 SINE MIR -15 193 91 28 48 0 0 chr6 5285766 5285808 -177129434 + GC_rich Low_complexity Low_complexity 1 42 0 2407 84 0 3 chr6 5287446 5287754 -177127488 - AluSx SINE Alu -5 307 1 1961 119 0 110 chr6 5289106 5289442 -177125800 + AluJb SINE Alu 2 300 -2 186 181 153 83 chr6 5289515 5289587 -177125655 - MIR3 SINE MIR -13 195 119 536 111 0 0 chr6 5289656 5289737 -177125505 - AluSq SINE Alu 0 313 233 1096 90 0 7 chr6 5289737 5289882 -177125360 - AluSq SINE Alu -168 144 1 1340 221 34 37 chr6 5289980 5290274 -177124968 - AluJb SINE Alu -9 293 1 393 184 26 0 chr6 5290904 5290980 -177124262 + MADE1 DNA Mariner 1 78 -2 268 214 119 127 chr6 5291034 5291160 -177124082 + MER5B DNA MER1_type 54 178 0 183 231 22 110 chr6 5291530 5291561 -177123681 - MIR SINE MIR -111 151 119 917 143 0 15 chr6 5291561 5291694 -177123548 + FLAM_C SINE Alu 3 133 0 183 231 22 110 chr6 5291694 5291753 -177123489 - MIR SINE MIR -143 119 69 2272 86 7 13 chr6 5292644 5292946 -177122296 + AluY SINE Alu 1 300 -11 8208 33 1 2 chr6 5292946 5294123 -177121119 - L1PA5 LINE L1 -569 5586 4409 4455 47 58 0 chr6 5294123 5294646 -177120596 + L1PA5 LINE L1 5585 6152 -2 328 301 164 35 chr6 5295840 5296166 -177119076 + L2 LINE L2 2717 3096 -176 362 333 98 50 chr6 5296201 5296618 -177118624 - MLT1K LTR MaLR -23 565 129 199 319 35 64 chr6 5296671 5296736 -177118506 + L2 LINE L2 3161 3226 -87 2144 76 0 0 chr6 5296736 5296998 -177118244 - AluSg SINE Alu -10 300 39 199 319 35 64 chr6 5296998 5297073 -177118169 + L2 LINE L2 3226 3297 -16 925 186 164 9 chr6 5297131 5297351 -177117891 + Tigger7 DNA MER2_type 8 261 -472 530 104 7 153 chr6 5297378 5297522 -177117720 + Tigger7 DNA MER2_type 2311 2433 -154 5997 151 37 16 chr6 5297700 5299121 -177116121 - L1MA4 LINE L1 -2 6298 4843 1053 149 24 53 chr6 5299121 5299329 -177115913 + Tigger7 DNA MER2_type 2290 2491 0 649 241 195 67 chr6 5299360 5299884 -177115358 + MLT1L LTR MaLR 3 593 -22 1843 137 7 28 chr6 5299894 5300179 -177115063 - AluJo SINE Alu -20 292 14 475 216 171 0 chr6 5300634 5300745 -177114497 + L2 LINE L2 3143 3272 0 575 241 15 30 chr6 5301547 5301680 -177113562 + MER94 DNA DNA 4 134 0 180 278 98 75 chr6 5303320 5303453 -177111789 + MIR SINE MIR 50 185 -77 2320 97 7 0 chr6 5304271 5304580 -177110662 + AluY SINE Alu 1 311 0 239 211 19 0 chr6 5304725 5304777 -177110465 + (TA)n Simple_repeat Simple_repeat 2 54 0 1644 198 92 24 chr6 5304792 5305171 -177110071 - MLT2B1 LTR ERVL -115 405 1 191 359 162 7 chr6 5305727 5305869 -177109373 + L2 LINE L2 2898 3061 -252 25 31 0 0 chr6 5306119 5306151 -177109091 + AT_rich Low_complexity Low_complexity 1 32 0 1332 124 14 18 chr6 5306617 5306834 -177108408 - L1MB3 LINE L1 -2 6181 5966 2078 124 0 45 chr6 5308130 5308276 -177106966 + AluSx SINE Alu 1 127 -185 2239 117 0 3 chr6 5308276 5308575 -177106667 + AluSp SINE Alu 11 308 -5 2078 124 0 45 chr6 5308575 5308742 -177106500 + AluSx SINE Alu 127 300 -12 857 274 115 32 chr6 5308982 5309416 -177105826 - L1MB3 LINE L1 -2032 5776 5307 1827 163 14 0 chr6 5311440 5311734 -177103508 - AluJb SINE Alu -14 298 1 365 241 111 19 chr6 5313782 5313890 -177101352 - L2 LINE L2 -3 3310 3193 4452 97 45 34 chr6 5314479 5315106 -177100136 - MER51A LTR ERV1 0 634 1 22 35 0 0 chr6 5315196 5315225 -177100017 + AT_rich Low_complexity Low_complexity 1 29 0 1720 167 14 10 chr6 5315902 5316195 -177099047 - AluJb SINE Alu -18 294 1 780 211 83 6 chr6 5316796 5316952 -177098290 + FRAM SINE Alu 1 166 -10 1252 305 88 57 chr6 5317436 5318502 -177096740 - L2 LINE L2 -567 2747 1649 186 43 0 0 chr6 5319163 5319186 -177096056 + (CA)n Simple_repeat Simple_repeat 2 24 0 2869 157 81 13 chr6 5319517 5320038 -177095204 - MER21A LTR ERV1 0 931 376 946 147 187 13 chr6 5320043 5320268 -177094974 - MER21A LTR ERV1 -667 264 1 415 184 112 0 chr6 5321149 5321247 -177093995 - MIR SINE MIR -17 245 137 4170 149 10 18 chr6 5321257 5321305 -177093937 - L1MB3 LINE L1 -2 6181 6134 2582 68 0 0 chr6 5321305 5321616 -177093626 - AluY SINE Alu 0 311 1 4170 149 10 18 chr6 5321616 5322246 -177092996 - L1MB3 LINE L1 -49 6134 5508 247 188 197 51 chr6 5322248 5322365 -177092877 - MIR SINE MIR -97 165 32 2348 105 0 0 chr6 5322541 5322847 -177092395 + AluSq SINE Alu 1 306 -7 201 74 0 0 chr6 5322855 5322882 -177092360 + (CAA)n Simple_repeat Simple_repeat 2 28 0 707 274 0 11 chr6 5323709 5323888 -177091354 - MER5B DNA MER1_type 0 178 2 750 112 0 0 chr6 5323961 5324068 -177091174 + AluSg/x SINE Alu 203 309 0 1800 84 0 16 chr6 5324761 5325010 -177090232 - L1PA6 LINE L1 -55 6099 5855 437 183 104 0 chr6 5325013 5325119 -177090123 + MLT2B2 LTR ERVL 351 465 -50 1295 132 51 180 chr6 5325837 5326192 -177089050 - AluJo SINE Alu -3 309 1 1050 158 0 0 chr6 5326483 5326641 -177088601 + FRAM SINE Alu 4 161 -15 483 18 0 0 chr6 5326967 5327023 -177088219 + (CA)n Simple_repeat Simple_repeat 1 56 0 239 232 171 0 chr6 5327436 5327518 -177087724 - MER5A DNA MER1_type -77 112 17 834 203 68 5 chr6 5327674 5327866 -177087376 - MIR SINE MIR -26 236 33 521 289 114 9 chr6 5328132 5328343 -177086899 - MIR SINE MIR -4 258 26 918 279 41 16 chr6 5329417 5329736 -177085506 - L1ME4a LINE L1 -259 5862 5536 447 158 12 12 chr6 5330264 5330346 -177084896 + MER117 DNA MER1_type 55 136 -61 339 280 88 40 chr6 5330752 5330877 -177084365 - MIR SINE MIR -58 150 20 259 345 236 3 chr6 5333314 5333615 -177081627 - L2 LINE L2 -318 2954 2586 410 217 61 20 chr6 5333622 5333826 -177081416 - MER5C DNA MER1_type -2 322 52 1825 190 40 3 chr6 5333928 5334280 -177080962 - MLT1A1 LTR MaLR 0 365 1 206 394 10 20 chr6 5334286 5334385 -177080857 - L2 LINE L2 -38 3234 3137 * 258 316 0 10 chr6 5334381 5334479 -177080763 - L2 LINE L2 -756 2558 2462 872 281 72 102 chr6 5334775 5335717 -177079525 + L1MC4a LINE L1 4390 5303 -843 336 248 132 16 chr6 5335752 5335881 -177079361 + L1MC4a LINE L1 5333 5476 -2332 219 271 139 66 chr6 5335925 5336047 -177079195 + L2 LINE L2 3183 3313 0 584 322 47 13 chr6 5336096 5336413 -177078829 + L1MC4a LINE L1 5566 5893 -1915 22 35 0 0 chr6 5337422 5337451 -177077791 + AT_rich Low_complexity Low_complexity 1 29 0 316 274 14 0 chr6 5337918 5337991 -177077251 - L2 LINE L2 -25 3247 3174 228 67 0 0 chr6 5338192 5338222 -177077020 + (GGGAGA)n Simple_repeat Simple_repeat 1 30 0 445 217 30 136 chr6 5338959 5339019 -177076223 - MER5B DNA MER1_type -1 177 112 306 0 0 0 chr6 5339019 5339053 -177076189 + (TAAAA)n Simple_repeat Simple_repeat 1 34 0 445 217 30 136 chr6 5339053 5339190 -177076052 - MER5B DNA MER1_type -66 112 1 442 313 108 35 chr6 5339190 5339505 -177075737 - L2 LINE L2 -495 2819 2482 378 61 0 0 chr6 5340892 5340941 -177074301 + (TTTC)n Simple_repeat Simple_repeat 2 50 0 2470 221 129 53 chr6 5341571 5342611 -177072631 + L1MCb LINE L1 3 1121 -4924 1935 167 50 81 chr6 5342626 5342674 -177072568 - LTR58 LTR ERV1 -2 677 629 1855 173 3 3 chr6 5342674 5342975 -177072267 + AluJb SINE Alu 1 301 -11 1935 167 50 81 chr6 5342975 5343254 -177071988 - LTR58 LTR ERV1 -50 629 343 2341 81 0 37 chr6 5343254 5343576 -177071666 + AluSg SINE Alu 1 310 0 1935 167 50 81 chr6 5343576 5343694 -177071548 - LTR58 LTR ERV1 -336 343 248 1500 116 455 40 chr6 5343694 5344142 -177071100 - MER51A LTR ERV1 0 634 1 1935 167 50 81 chr6 5344142 5344238 -177071004 - LTR58 LTR ERV1 -431 248 151 4066 147 14 1 chr6 5344239 5344941 -177070301 + MER50 LTR ERV1 1 711 -23 365 147 44 0 chr6 5344947 5345015 -177070227 - LTR58 LTR ERV1 -534 145 75 728 147 19 45 chr6 5345017 5345173 -177070069 + MST-int LTR MaLR 382 533 -1118 1145 213 20 20 chr6 5345888 5346141 -177069101 - MLT1A1 LTR MaLR -4 361 109 226 287 69 23 chr6 5347198 5347285 -177067957 - L2 LINE L2 -1 3271 3181 2839 128 40 6 chr6 5348921 5349391 -177065851 + LTR19A LTR ERV1 1 486 0 207 0 0 0 chr6 5349619 5349642 -177065600 + (T)n Simple_repeat Simple_repeat 1 23 0 428 332 105 26 chr6 5351008 5351360 -177063882 + L1MC/D LINE L1 5336 5715 -2093 2588 102 8 6 chr6 5352532 5352895 -177062347 + THE1B LTR MaLR 1 364 0 194 245 142 38 chr6 5353636 5353742 -177061500 + MIR SINE MIR 20 136 -72 1484 278 136 23 chr6 5354611 5355317 -177059925 - MER21B LTR ERV1 -57 806 21 21 36 0 0 chr6 5355407 5355435 -177059807 + AT_rich Low_complexity Low_complexity 1 28 0 1772 184 3 0 chr6 5355999 5356298 -177058944 + AluJb SINE Alu 1 300 -12 548 272 29 59 chr6 5357118 5357357 -177057885 - MIR SINE MIR -12 250 19 673 279 71 16 chr6 5359414 5359736 -177055506 + L1MC4a LINE L1 5502 5841 -1967 23 0 0 0 chr6 5361656 5361679 -177053563 + AT_rich Low_complexity Low_complexity 1 23 0 1708 44 48 24 chr6 5361679 5361929 -177053313 - L1MA1 LINE L1 0 6302 6047 350 310 90 33 chr6 5361976 5362308 -177052934 - L1M4 LINE L1 -914 5232 4882 293 138 0 17 chr6 5362321 5362379 -177052863 + (TATATG)n Simple_repeat Simple_repeat 4 60 0 1352 216 91 32 chr6 5364526 5364606 -177050636 - MER95 LTR ERV 0 431 357 1759 168 7 26 chr6 5364606 5364910 -177050332 - AluJo SINE Alu -14 298 1 1352 216 91 32 chr6 5364910 5365236 -177050006 - MER95 LTR ERV -74 357 1 2209 60 0 8 chr6 5366041 5366309 -177048933 + AluSg SINE Alu 1 266 -44 432 0 0 0 chr6 5366364 5366412 -177048830 + (TA)n Simple_repeat Simple_repeat 2 49 0 189 0 0 0 chr6 5366412 5366433 -177048809 + (T)n Simple_repeat Simple_repeat 1 21 0 2230 132 0 0 chr6 5366683 5366994 -177048248 - AluSx SINE Alu -1 311 1 260 303 45 0 chr6 5367181 5367270 -177047972 - MIR3 SINE MIR -6 202 110 545 278 99 30 chr6 5367321 5367584 -177047658 + Tigger8 DNA MER2_type 24 304 -362 2301 84 3 0 chr6 5367666 5367953 -177047289 + AluSp SINE Alu 21 308 -5 2192 99 0 0 chr6 5368376 5368687 -177046555 - AluSq SINE Alu 0 311 1 2142 143 0 10 chr6 5369953 5370267 -177044975 - AluSx SINE Alu -1 311 1 302 264 23 23 chr6 5371276 5371363 -177043879 + MIR3 SINE MIR 98 184 -24 265 265 43 8 chr6 5371772 5371889 -177043353 - L1MC4 LINE L1 -1 8041 7921 2225 217 79 72 chr6 5372025 5372087 -177043155 - L1ME2 LINE L1 0 6164 6104 2099 129 0 7 chr6 5372087 5372389 -177042853 - AluSx SINE Alu -12 300 1 2225 217 79 72 chr6 5372389 5372680 -177042562 - L1ME2 LINE L1 -60 6104 5817 186 43 0 0 chr6 5372680 5372703 -177042539 + (TG)n Simple_repeat Simple_repeat 2 24 0 2225 217 79 72 chr6 5372703 5373538 -177041704 - L1ME2 LINE L1 -347 5817 4959 212 57 0 29 chr6 5373657 5373692 -177041550 + (TTTA)n Simple_repeat Simple_repeat 2 35 0 202 337 0 12 chr6 5373709 5373792 -177041450 - L2 LINE L2 -67 3246 3165 2395 227 38 24 chr6 5373870 5374615 -177040627 + L1M4 LINE L1 3850 4604 -1542 259 243 0 0 chr6 5374629 5374699 -177040543 + Charlie1 DNA MER1_type 1569 1638 -1123 1939 175 72 30 chr6 5374742 5375239 -177040003 - L1MC3 LINE L1 -86 7699 7182 1072 143 0 34 chr6 5375308 5375483 -177039759 - AluJo SINE Alu -143 169 1 951 282 33 3 chr6 5375503 5375865 -177039377 + L1M4 LINE L1 4631 5003 -1143 784 163 0 7 chr6 5375893 5376046 -177039196 + L1MD1 LINE L1 6089 6240 -2 1416 114 35 26 chr6 5377199 5377427 -177037815 - MER30 DNA MER1_type 0 230 1 218 320 72 39 chr6 5377673 5377854 -177037388 + MIR3 SINE MIR 15 201 -7 200 167 21 0 chr6 5377893 5377941 -177037301 + CT-rich Low_complexity Low_complexity 4 52 0 4974 153 57 24 chr6 5377955 5379016 -177036226 - L1MA6 LINE L1 0 6300 5205 2555 57 0 0 chr6 5379687 5379988 -177035254 - AluY SINE Alu -10 301 1 652 264 56 0 chr6 5379994 5380172 -177035070 - MER5A DNA MER1_type -1 188 1 25 51 0 0 chr6 5380180 5380219 -177035023 + AT_rich Low_complexity Low_complexity 1 39 0 27 0 0 0 chr6 5380262 5380289 -177034953 + AT_rich Low_complexity Low_complexity 1 27 0 2082 102 54 7 chr6 5380538 5380832 -177034410 - AluSg SINE Alu -2 308 1 255 103 0 0 chr6 5380877 5380916 -177034326 + (CA)n Simple_repeat Simple_repeat 1 39 0 2833 196 42 24 chr6 5381049 5381342 -177033900 - MER82 DNA MER2_type -12 641 355 1988 128 0 7 chr6 5381342 5381624 -177033618 + AluSx SINE Alu 1 280 -32 279 39 20 39 chr6 5381628 5381679 -177033563 + (TAGA)n Simple_repeat Simple_repeat 3 52 0 2833 196 42 24 chr6 5381679 5382003 -177033239 - MER82 DNA MER2_type -300 353 8 185 286 0 0 chr6 5382926 5382968 -177032274 + MIR SINE MIR 35 76 -186 23 0 0 0 chr6 5383361 5383384 -177031858 + AT_rich Low_complexity Low_complexity 1 23 0 2186 116 0 3 chr6 5384206 5384516 -177030726 - AluSx SINE Alu -3 309 1 185 62 0 31 chr6 5385452 5385484 -177029758 + (TTCA)n Simple_repeat Simple_repeat 4 34 0 201 333 33 17 chr6 5385553 5385613 -177029629 - L2 LINE L2 -93 3179 3119 1564 220 114 22 chr6 5386172 5386723 -177028519 - L1ME4a LINE L1 -7 6114 5513 188 313 67 47 chr6 5387389 5387539 -177027703 - MIR SINE MIR -1 261 109 3623 120 25 36 chr6 5387548 5388090 -177027152 - L1MA8 LINE L1 -426 5865 5328 2465 84 0 0 chr6 5388090 5388401 -177026841 - AluY SINE Alu 0 311 1 3623 120 25 36 chr6 5388401 5388549 -177026693 - L1MA8 LINE L1 -963 5328 5180 390 319 24 24 chr6 5389413 5389579 -177025663 - MIR SINE MIR -94 168 3 658 282 35 0 chr6 5389748 5389922 -177025320 - MER58A DNA MER1_type 0 224 45 1825 136 3 69 chr6 5389926 5390258 -177024984 + AluJb SINE Alu 1 310 -2 202 146 0 24 chr6 5390339 5390380 -177024862 + (TTTA)n Simple_repeat Simple_repeat 1 40 0 1809 136 6 73 chr6 5390493 5390823 -177024419 - AluJo SINE Alu 0 312 5 2421 129 90 5 chr6 5390835 5391246 -177023996 - Tigger2 DNA MER2_type 0 2718 2273 393 197 15 0 chr6 5391237 5391303 -177023939 - Tigger2 DNA MER2_type -2650 68 2 * 293 351 27 0 chr6 5391344 5391455 -177023787 + MIR SINE MIR 77 190 -72 397 292 34 46 chr6 5396098 5396278 -177018964 - MIR3 SINE MIR -64 144 12 420 291 157 13 chr6 5397004 5397386 -177017856 + L1ME3A LINE L1 2113 2549 -3597 23 0 0 0 chr6 5397469 5397492 -177017750 + AT_rich Low_complexity Low_complexity 1 23 0 265 308 0 0 chr6 5397498 5397576 -177017666 + (CATATA)n Simple_repeat Simple_repeat 1 78 0 259 232 10 61 chr6 5397861 5397960 -177017282 + L1MC4 LINE L1 7291 7384 -658 352 255 75 9 chr6 5398543 5398649 -177016593 + L1MC5 LINE L1 7249 7361 -600 942 215 121 50 chr6 5398966 5399422 -177015820 + L1MC5 LINE L1 7430 7917 -44 1439 262 115 59 chr6 5399673 5400752 -177014490 + L1ME3A LINE L1 3521 4659 -1487 281 298 72 41 chr6 5400912 5401231 -177014011 + L1ME3A LINE L1 4903 5231 -915 468 313 101 2 chr6 5401433 5401690 -177013552 + L1ME3A LINE L1 5351 5628 -538 376 303 28 0 chr6 5401712 5401854 -177013388 + L1ME3A LINE L1 5740 5885 -285 250 259 0 0 chr6 5402169 5402223 -177013019 + Charlie1 DNA MER1_type 2708 2761 0 22 0 0 0 chr6 5402700 5402722 -177012520 + AT_rich Low_complexity Low_complexity 1 22 0 26 50 0 0 chr6 5403142 5403182 -177012060 + AT_rich Low_complexity Low_complexity 1 40 0 233 245 0 0 chr6 5403374 5403423 -177011819 + Charlie1 DNA MER1_type 2713 2761 0 491 221 42 122 chr6 5404502 5404715 -177010527 - LTR41 LTR ERVL -2 771 576 689 169 37 7 chr6 5404975 5405111 -177010131 - LTR41 LTR ERVL -598 175 36 2227 72 11 0 chr6 5406142 5406475 -177008767 - AluY SINE Alu 0 336 1 456 19 0 0 chr6 5406549 5406602 -177008640 + (CA)n Simple_repeat Simple_repeat 2 54 0 1337 219 22 52 chr6 5407905 5408317 -177006925 - MLT2B1 LTR ERVL 0 414 1 288 326 23 38 chr6 5408612 5408744 -177006498 + MIR SINE MIR 20 149 -113 2369 99 0 13 chr6 5410592 5410905 -177004337 - AluSc SINE Alu 0 309 1 594 349 96 41 chr6 5411463 5412245 -177002997 - L2 LINE L2 -430 2884 2060 227 296 62 124 chr6 5412321 5412693 -177002549 - L2 LINE L2 -1610 1704 1356 780 211 83 6 chr6 5413492 5413648 -177001594 + FRAM SINE Alu 1 166 -10 1252 305 88 57 chr6 5414132 5415198 -177000044 - L2 LINE L2 -567 2747 1649 186 43 0 0 chr6 5415859 5415882 -176999360 + (CA)n Simple_repeat Simple_repeat 2 24 0 2869 157 81 13 chr6 5416213 5416734 -176998508 - MER21A LTR ERV1 0 931 376 946 147 187 13 chr6 5416739 5416964 -176998278 - MER21A LTR ERV1 -667 264 1 415 184 112 0 chr6 5417845 5417943 -176997299 - MIR SINE MIR -17 245 137 4170 149 10 18 chr6 5417953 5418001 -176997241 - L1MB3 LINE L1 -2 6181 6134 2582 68 0 0 chr6 5418001 5418312 -176996930 - AluY SINE Alu 0 311 1 4170 149 10 18 chr6 5418312 5418942 -176996300 - L1MB3 LINE L1 -49 6134 5508 247 188 197 51 chr6 5418944 5419061 -176996181 - MIR SINE MIR -97 165 32 2348 105 0 0 chr6 5419237 5419543 -176995699 + AluSq SINE Alu 1 306 -7 201 74 0 0 chr6 5419551 5419578 -176995664 + (CAA)n Simple_repeat Simple_repeat 2 28 0 707 274 0 11 chr6 5420405 5420584 -176994658 - MER5B DNA MER1_type 0 178 2 750 112 0 0 chr6 5420657 5420764 -176994478 + AluSg/x SINE Alu 203 309 0 1800 84 0 16 chr6 5421457 5421706 -176993536 - L1PA6 LINE L1 -55 6099 5855 437 183 104 0 chr6 5421709 5421815 -176993427 + MLT2B2 LTR ERVL 351 465 -50 1295 132 51 180 chr6 5422533 5422888 -176992354 - AluJo SINE Alu -3 309 1 2182 92 0 24 chr6 5424779 5425094 -176990148 - AluY SINE Alu 0 311 1 369 258 22 82 chr6 5425375 5425557 -176989685 + L2 LINE L2 3118 3288 -25 334 298 37 62 chr6 5426160 5426321 -176988921 + MIR3 SINE MIR 16 172 -36 1975 150 10 0 chr6 5426385 5426691 -176988551 + AluJb SINE Alu 1 309 -3 503 245 0 0 chr6 5426691 5426797 -176988445 - L2 LINE L2 -14 3299 3194 2251 94 7 3 chr6 5426902 5427199 -176988043 + AluSg SINE Alu 1 298 -12 261 277 53 0 chr6 5427848 5427942 -176987300 + L2 LINE L2 3164 3262 -10 1016 286 61 61 chr6 5430152 5430778 -176984464 - HAL1 LINE L1 -30 2477 1852 368 255 68 19 chr6 5430826 5430987 -176984255 - LTR67 LTR ERVL -8 549 381 226 344 33 11 chr6 5431245 5431335 -176983907 - LTR67 LTR ERVL -367 190 99 279 54 0 0 chr6 5431417 5431454 -176983788 + (TG)n Simple_repeat Simple_repeat 2 38 0 1808 182 0 3 chr6 5431494 5431790 -176983452 - AluSx SINE Alu -17 295 1 342 233 186 16 chr6 5431887 5432016 -176983226 - L1MB8 LINE L1 -64 6114 5964 340 129 0 32 chr6 5432016 5432078 -176983164 - Alu SINE Alu -9 293 234 3063 189 89 101 chr6 5432078 5433388 -176981854 - L1ME1 LINE L1 -196 5970 4513 534 236 152 12 chr6 5433388 5433553 -176981689 - MER58A DNA MER1_type 0 224 37 3063 189 89 101 chr6 5433553 5433800 -176981442 - L1ME1 LINE L1 -1653 4513 4264 366 211 46 28 chr6 5433784 5433893 -176981349 - HAL1 LINE L1 -1043 1464 1354 * 198 204 0 45 chr6 5434551 5434595 -176980647 - L2 LINE L2 -1 3271 3230 207 0 0 0 chr6 5435238 5435261 -176979981 + (GAAA)n Simple_repeat Simple_repeat 2 24 0 298 341 112 18 chr6 5435338 5435561 -176979681 + L3b LINE CR1 1272 1515 -68 249 322 99 16 chr6 5436824 5436945 -176978297 + L2 LINE L2 3160 3290 -23 231 234 125 16 chr6 5437131 5437259 -176977983 - MER5B DNA MER1_type -34 144 3 199 50 75 0 chr6 5437638 5437678 -176977564 + (TTTA)n Simple_repeat Simple_repeat 3 45 0 369 240 10 48 chr6 5438176 5438280 -176976962 + MIR3 SINE MIR 109 208 0 251 159 0 0 chr6 5438482 5438526 -176976716 - L3 LINE CR1 -8 1569 1526 * 256 178 0 0 chr6 5438487 5438532 -176976710 - MIR3 SINE MIR -17 191 147 192 77 0 0 chr6 5438804 5438830 -176976412 + (A)n Simple_repeat Simple_repeat 1 26 0 682 340 31 12 chr6 5440265 5440521 -176974721 + MIR SINE MIR 2 262 0 21 0 0 0 chr6 5440524 5440545 -176974697 + AT_rich Low_complexity Low_complexity 1 21 0 1281 159 0 5 chr6 5440605 5440903 -176974339 - MER2 DNA MER2_type 0 345 2 816 157 0 24 chr6 5442293 5442459 -176972783 - L1MC3 LINE L1 -8 7777 7616 25 31 0 0 chr6 5442748 5442780 -176972462 + AT_rich Low_complexity Low_complexity 1 32 0 2151 136 3 0 chr6 5444259 5444568 -176970674 - AluSx SINE Alu -2 310 1 345 223 136 82 chr6 5445616 5445800 -176969442 + MIR SINE MIR 21 214 -48 332 140 0 0 chr6 5446990 5447050 -176968192 + FRAM/FAM SINE Alu 28 75 -100 236 234 52 0 chr6 5447131 5447208 -176968034 - L1MC4 LINE L1 -1350 6692 6612 671 159 26 0 chr6 5447208 5447359 -176967883 + (TA)n Simple_repeat Simple_repeat 2 156 0 32 26 0 0 chr6 5447371 5447410 -176967832 + AT_rich Low_complexity Low_complexity 1 39 0 2251 76 3 10 chr6 5447763 5448051 -176967191 + AluSc SINE Alu 1 286 -23 232 184 0 0 chr6 5448583 5448621 -176966621 - U6 snRNA snRNA -69 38 1 1344 179 105 10 chr6 5448630 5448926 -176966316 + MER7A DNA MER2_type 21 342 -4 2110 133 0 0 chr6 5449453 5449739 -176965503 - AluSx SINE Alu -26 286 1 2698 153 24 8 chr6 5451517 5452021 -176963221 + L1MC1 LINE L1 5822 6333 0 448 253 48 20 chr6 5452098 5452244 -176962998 - L1MD3 LINE L1 -215 7780 7631 5957 211 84 66 chr6 5452244 5453582 -176961660 - L1MC4a LINE L1 -288 7520 6122 1876 131 0 4 chr6 5453582 5453850 -176961392 - AluSx SINE Alu -30 282 16 5957 211 84 66 chr6 5453850 5454735 -176960507 - L1MC4a LINE L1 -1686 6122 5255 392 318 39 37 chr6 5454842 5455007 -176960235 - L1 LINE L1 -3325 2821 2662 240 35 0 0 chr6 5455007 5455036 -176960206 + (TG)n Simple_repeat Simple_repeat 2 30 0 392 318 39 37 chr6 5455036 5455171 -176960071 - L1 LINE L1 -3484 2662 2529 234 280 31 44 chr6 5455247 5455472 -176959770 - L1 LINE L1 -3687 2459 2238 272 317 86 31 chr6 5455822 5456301 -176958941 - HAL1b LINE L1 -510 838 334 323 347 52 21 chr6 5456362 5456555 -176958687 - HAL1 LINE L1 -1218 1289 1091 212 222 14 42 chr6 5456607 5456679 -176958563 + T-rich Low_complexity Low_complexity 2 71 0 201 39 0 0 chr6 5457410 5457436 -176957806 + (CCTG)n Simple_repeat Simple_repeat 3 28 0 32 0 0 0 chr6 5457896 5457928 -176957314 + AT_rich Low_complexity Low_complexity 1 32 0 408 294 94 0 chr6 5458288 5458468 -176956774 - MIR SINE MIR 0 262 66 191 300 25 25 chr6 5458471 5458551 -176956691 - L2 LINE L2 -37 3276 3197 1547 156 51 0 chr6 5459109 5459165 -176956077 - MER46B DNA MER2_type -2495 236 184 2250 93 3 46 chr6 5459165 5459489 -176955753 - AluSg SINE Alu 0 310 1 1547 156 51 0 chr6 5459489 5459727 -176955515 - MER46B DNA MER2_type -2547 184 52 2422 71 0 16 chr6 5459870 5460180 -176955062 - AluY SINE Alu -6 305 1 264 200 0 0 chr6 5460609 5460669 -176954573 - L1ME3 LINE L1 -8 6154 6095 * 1795 237 94 22 chr6 5460667 5461339 -176953903 - L1ME1 LINE L1 -21 6143 5435 288 0 0 0 chr6 5461432 5461464 -176953778 + (TA)n Simple_repeat Simple_repeat 1 32 0 284 188 72 0 chr6 5461464 5461533 -176953709 + L1ME LINE L1 5368 5441 -723 307 252 47 16 chr6 5461709 5461836 -176953406 - L1MEd LINE L1 -5980 139 9 229 363 48 16 chr6 5462872 5462996 -176952246 + MIR3 SINE MIR 14 141 -67 2128 101 3 14 chr6 5463563 5463860 -176951382 + AluSc SINE Alu 1 294 -15 2141 119 0 28 chr6 5464538 5464858 -176950384 - AluSx SINE Alu -1 311 1 224 265 0 0 chr6 5465013 5465062 -176950180 + (TAA)n Simple_repeat Simple_repeat 1 49 0 412 322 66 0 chr6 5465258 5465410 -176949832 - MIR SINE MIR -77 185 24 1019 146 0 13 chr6 5465517 5465675 -176949567 + AluJo SINE Alu 127 282 -30 261 0 0 0 chr6 5465678 5465707 -176949535 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 617 220 125 26 chr6 5466578 5466842 -176948400 + LTR16A LTR ERVL 83 372 -78 2693 215 78 35 chr6 5468645 5469208 -176946034 - L1ME1 LINE L1 0 6235 5698 2256 101 0 13 chr6 5469208 5469514 -176945728 - AluSg1 SINE Alu -7 302 1 2693 215 78 35 chr6 5469514 5469695 -176945547 - L1ME1 LINE L1 -537 5698 5526 2354 108 0 6 chr6 5469695 5470009 -176945233 - AluSx SINE Alu 0 312 1 2693 215 78 35 chr6 5470009 5470104 -176945138 - L1ME1 LINE L1 -709 5526 5437 1662 180 30 3 chr6 5470104 5470399 -176944843 - AluJb SINE Alu -9 303 1 2693 215 78 35 chr6 5470399 5471012 -176944230 - L1ME1 LINE L1 -798 5437 4726 * 3944 268 99 33 chr6 5470995 5471618 -176943624 - L1ME1 LINE L1 -4123 2273 1693 1764 156 0 36 chr6 5471618 5471920 -176943322 - AluJb SINE Alu -21 291 1 3944 268 99 33 chr6 5471920 5473188 -176942054 - L1ME1 LINE L1 -4703 1693 256 242 299 62 0 chr6 5473191 5473273 -176941969 - L1ME1 LINE L1 -6209 187 112 216 0 0 0 chr6 5473273 5473297 -176941945 + (TTA)n Simple_repeat Simple_repeat 1 24 0 242 299 62 0 chr6 5473297 5473358 -176941884 - L1ME1 LINE L1 -6284 112 35 2061 116 101 18 chr6 5474338 5474674 -176940568 - THE1B LTR MaLR 0 364 1 7263 140 22 18 chr6 5474674 5476318 -176938924 - THE1B-int LTR MaLR 0 1651 1 2085 108 108 21 chr6 5476318 5476653 -176938589 - THE1B LTR MaLR 0 364 1 380 283 53 84 chr6 5476865 5477091 -176938151 + MIR SINE MIR 39 257 -5 565 315 91 17 chr6 5477180 5477412 -176937830 - MIR SINE MIR 0 262 14 553 292 21 26 chr6 5478571 5478957 -176936285 + L1MC4a LINE L1 5534 5982 -1826 280 299 17 17 chr6 5480230 5480347 -176934895 - MIR SINE MIR -99 163 47 2069 150 0 0 chr6 5480961 5481254 -176933988 - AluSx SINE Alu -19 293 1 735 90 27 0 chr6 5481411 5481522 -176933720 - L1MA5 LINE L1 0 6300 6187 694 182 20 0 chr6 5481562 5481710 -176933532 + L1 LINE L1 4965 5115 -1031 28 29 0 0 chr6 5482717 5482752 -176932490 + AT_rich Low_complexity Low_complexity 1 35 0 994 219 22 75 chr6 5483218 5483579 -176931663 + L1ME1 LINE L1 5802 6143 -23 247 263 11 11 chr6 5483606 5483701 -176931541 + MER113 DNA MER1_type? 139 233 -288 1740 162 10 26 chr6 5483852 5484160 -176931082 + AluJo SINE Alu 1 303 -9 762 169 21 21 chr6 5484024 5484166 -176931076 + AluJo/FRAM SINE Alu 168 309 -3 328 311 41 16 chr6 5484170 5484292 -176930950 + MIR SINE MIR 20 144 -118 30 27 0 0 chr6 5484880 5484917 -176930325 + AT_rich Low_complexity Low_complexity 1 37 0 47 0 0 0 chr6 5486319 5486366 -176928876 + AT_rich Low_complexity Low_complexity 1 47 0 2051 87 11 0 chr6 5486391 5486656 -176928586 + AluSx SINE Alu 29 296 -16 620 43 98 0 chr6 5486656 5486819 -176928423 + (TA)n Simple_repeat Simple_repeat 1 179 0 25 0 0 0 chr6 5486844 5486869 -176928373 + AT_rich Low_complexity Low_complexity 1 25 0 463 289 34 39 chr6 5487462 5487666 -176927576 + MIR SINE MIR 46 248 -14 183 42 0 0 chr6 5488431 5488455 -176926787 + (TTAA)n Simple_repeat Simple_repeat 3 26 0 2094 115 0 7 chr6 5488455 5488742 -176926500 - AluSx SINE Alu -27 285 1 22 0 0 0 chr6 5488742 5488764 -176926478 + AT_rich Low_complexity Low_complexity 1 22 0 267 279 29 10 chr6 5489045 5489149 -176926093 + CT-rich Low_complexity Low_complexity 2 107 0 305 324 176 9 chr6 5489260 5489482 -176925760 - MIR SINE MIR -1 261 3 186 349 40 84 chr6 5490774 5491022 -176924220 - L2 LINE L2 -27 3245 3009 306 283 116 52 chr6 5491022 5491195 -176924047 - MER5A DNA MER1_type -1 188 5 1375 202 27 34 chr6 5491228 5491666 -176923576 - L1ME1 LINE L1 -4 6162 5626 947 259 47 20 chr6 5491656 5492000 -176923242 - L1ME LINE L1 -3479 2601 2249 * 1039 268 97 67 chr6 5491997 5492973 -176922269 - L1ME LINE L1 -4310 1770 737 1451 149 40 4 chr6 5492973 5493201 -176922041 - MER46A DNA MER2_type 0 236 1 1039 268 97 67 chr6 5493201 5493942 -176921300 - L1ME LINE L1 -5343 737 20 252 214 29 14 chr6 5494146 5494216 -176921026 + CT-rich Low_complexity Low_complexity 3 73 0 261 253 74 74 chr6 5494398 5494734 -176920508 - L1ME4a LINE L1 -1 6120 5785 296 303 181 21 chr6 5494772 5494960 -176920282 - L1ME4a LINE L1 -422 5699 5482 716 174 0 58 chr6 5495012 5495150 -176920092 - FLAM_A SINE Alu -2 131 2 2325 113 0 0 chr6 5495238 5495549 -176919693 - AluSx SINE Alu -1 311 1 708 299 86 30 chr6 5495806 5496281 -176918961 - L1ME3A LINE L1 -230 5940 5439 867 171 35 29 chr6 5496281 5496451 -176918791 + AluJb SINE Alu 135 305 -7 21 36 0 0 chr6 5496518 5496546 -176918696 + AT_rich Low_complexity Low_complexity 1 28 0 236 292 35 21 chr6 5496551 5496695 -176918547 - L1ME3A LINE L1 -813 5333 5188 463 251 135 65 chr6 5497683 5498086 -176917156 + MLT1H LTR MaLR 30 547 -2 348 24 0 0 chr6 5498420 5498461 -176916781 + (TG)n Simple_repeat Simple_repeat 1 41 0 2411 95 0 0 chr6 5498514 5498820 -176916422 + AluSg SINE Alu 1 306 -4 198 0 0 0 chr6 5498820 5498842 -176916400 + (GA)n Simple_repeat Simple_repeat 2 23 0 574 192 0 10 chr6 5498902 5499006 -176916236 + L2 LINE L2 3189 3291 -22 504 235 90 36 chr6 5499194 5499360 -176915882 + MIR3 SINE MIR 11 185 -23 226 288 137 0 chr6 5499941 5500080 -176915162 + MER103 DNA DNA 7 164 -2 2432 69 0 13 chr6 5500245 5500550 -176914692 + AluY SINE Alu 1 301 -10 182 371 96 20 chr6 5500843 5501040 -176914202 - L2 LINE L2 -93 3179 2968 462 248 0 9 chr6 5501057 5501170 -176914072 - L1MA9 LINE L1 -38 6274 6163 191 360 126 18 chr6 5501396 5501618 -176913624 - L2 LINE L2 -562 2752 2507 340 250 0 0 chr6 5501973 5502037 -176913205 + MER8 DNA MER2_type 150 213 -26 443 338 87 51 chr6 5502105 5502573 -176912669 - L2 LINE L2 -55 3217 2725 1126 226 110 18 chr6 5502709 5503099 -176912143 - L1MC4a LINE L1 -1804 6004 5579 262 340 172 0 chr6 5503139 5503377 -176911865 - L2 LINE L2 -812 2502 2224 2342 102 0 13 chr6 5503394 5503709 -176911533 + AluSx SINE Alu 1 311 -1 202 135 27 0 chr6 5503895 5503932 -176911310 + (TTCA)n Simple_repeat Simple_repeat 3 40 0 1430 157 0 25 chr6 5503959 5504201 -176911041 - MER46A DNA MER2_type 0 236 1 1557 183 8 0 chr6 5504224 5504459 -176910783 + MER8 DNA MER2_type 3 239 0 933 231 74 26 chr6 5504718 5505029 -176910213 - MER58B DNA MER1_type -8 333 8 184 174 65 0 chr6 5505037 5505083 -176910159 - L2 LINE L2 -310 2962 2914 250 350 60 0 chr6 5506879 5506979 -176908263 + L2 LINE L2 3201 3306 -7 2182 92 0 24 chr6 5508656 5508971 -176906271 - AluY SINE Alu 0 311 1 369 258 22 82 chr6 5509252 5509434 -176905808 + L2 LINE L2 3118 3288 -25 334 298 37 62 chr6 5510037 5510198 -176905044 + MIR3 SINE MIR 16 172 -36 1975 150 10 0 chr6 5510262 5510568 -176904674 + AluJb SINE Alu 1 309 -3 503 245 0 0 chr6 5510568 5510674 -176904568 - L2 LINE L2 -14 3299 3194 2251 94 7 3 chr6 5510779 5511076 -176904166 + AluSg SINE Alu 1 298 -12 261 277 53 0 chr6 5511725 5511819 -176903423 + L2 LINE L2 3164 3262 -10 1016 286 61 61 chr6 5514029 5514655 -176900587 - HAL1 LINE L1 -30 2477 1852 368 255 68 19 chr6 5514703 5514864 -176900378 - LTR67 LTR ERVL -8 549 381 226 344 33 11 chr6 5515122 5515212 -176900030 - LTR67 LTR ERVL -367 190 99 279 54 0 0 chr6 5515294 5515331 -176899911 + (TG)n Simple_repeat Simple_repeat 2 38 0 1808 182 0 3 chr6 5515371 5515667 -176899575 - AluSx SINE Alu -17 295 1 342 233 186 16 chr6 5515764 5515893 -176899349 - L1MB8 LINE L1 -64 6114 5964 340 129 0 32 chr6 5515893 5515955 -176899287 - Alu SINE Alu -9 293 234 3063 189 89 101 chr6 5515955 5517265 -176897977 - L1ME1 LINE L1 -196 5970 4513 534 236 152 12 chr6 5517265 5517430 -176897812 - MER58A DNA MER1_type 0 224 37 3063 189 89 101 chr6 5517430 5517677 -176897565 - L1ME1 LINE L1 -1653 4513 4264 366 211 46 28 chr6 5517661 5517770 -176897472 - HAL1 LINE L1 -1043 1464 1354 * 196 204 0 45 chr6 5518428 5518472 -176896770 - L2 LINE L2 -1 3271 3230 207 0 0 0 chr6 5519115 5519138 -176896104 + (GAAA)n Simple_repeat Simple_repeat 2 24 0 290 341 112 18 chr6 5519215 5519438 -176895804 + L3b LINE CR1 1272 1515 -68 311 314 108 10 chr6 5520720 5520822 -176894420 + L2 LINE L2 3138 3249 -23 236 234 125 16 chr6 5521008 5521136 -176894106 - MER5B DNA MER1_type -34 144 3 199 50 75 0 chr6 5521515 5521555 -176893687 + (TTTA)n Simple_repeat Simple_repeat 3 45 0 363 240 10 48 chr6 5522053 5522157 -176893085 + MIR3 SINE MIR 109 208 0 252 159 0 0 chr6 5522359 5522403 -176892839 - L3 LINE CR1 -8 1569 1526 * 259 178 0 0 chr6 5522364 5522409 -176892833 - MIR3 SINE MIR -17 191 147 192 77 0 0 chr6 5522681 5522707 -176892535 + (A)n Simple_repeat Simple_repeat 1 26 0 657 340 31 12 chr6 5524142 5524398 -176890844 + MIR SINE MIR 2 262 0 21 0 0 0 chr6 5524401 5524422 -176890820 + AT_rich Low_complexity Low_complexity 1 21 0 1385 159 0 5 chr6 5524482 5524780 -176890462 - MER2 DNA MER2_type 0 345 2 209 265 0 0 chr6 5526747 5526796 -176888446 + GA-rich Low_complexity Low_complexity 5 53 0 2551 70 0 3 chr6 5527572 5527884 -176887358 + AluY SINE Alu 1 311 0 202 239 0 0 chr6 5528559 5528605 -176886637 + (TTTA)n Simple_repeat Simple_repeat 3 48 0 2089 154 14 61 chr6 5528719 5528991 -176886251 - MER7A DNA MER2_type -2692 346 96 2204 97 10 0 chr6 5528991 5529280 -176885962 - AluSg SINE Alu -13 297 6 2089 154 14 61 chr6 5529280 5529370 -176885872 - MER7A DNA MER2_type -2942 96 3 292 311 185 12 chr6 5529832 5530123 -176885119 + L2 LINE L2 2712 3037 -276 343 197 94 60 chr6 5530290 5530407 -176884835 + MLT1L LTR MaLR 147 267 -348 330 236 85 9 chr6 5530544 5530650 -176884592 + MLT1L LTR MaLR 498 611 -4 544 273 42 42 chr6 5530655 5530871 -176884371 + L2 LINE L2 3098 3313 0 204 234 0 0 chr6 5530871 5530918 -176884324 + (TGAA)n Simple_repeat Simple_repeat 2 48 0 677 222 74 39 chr6 5531857 5532060 -176883182 + MIR SINE MIR 5 214 -48 1917 134 0 3 chr6 5532064 5532377 -176882865 + AluJo SINE Alu 1 312 0 312 273 79 52 chr6 5532701 5532885 -176882357 - MIR SINE MIR -64 198 11 1229 289 150 6 chr6 5534299 5534786 -176880456 + L3 LINE CR1 527 1083 -494 314 215 116 70 chr6 5536499 5536671 -176878571 + MER104 DNA Tc2 1 180 0 320 306 88 69 chr6 5536874 5537135 -176878107 - L2 LINE L2 -22 3250 2985 253 151 0 38 chr6 5537404 5537457 -176877785 + LTR16C LTR ERVL 185 235 -256 354 267 68 25 chr6 5537517 5537678 -176877564 + LTR16C LTR ERVL 320 487 -4 1681 172 44 0 chr6 5537724 5538037 -176877205 + AluSx SINE Alu 1 325 0 850 149 0 27 chr6 5538315 5538463 -176876779 + FRAM SINE Alu 32 175 -1 902 178 86 25 chr6 5538709 5538906 -176876336 + MER3 DNA MER1_type 1 209 0 241 277 108 0 chr6 5539546 5539629 -176875613 + MIR SINE MIR 115 206 -56 728 238 109 5 chr6 5539890 5540083 -176875159 - MER58C DNA MER1_type -2 213 1 749 257 30 0 chr6 5540091 5540293 -176874949 - MER3 DNA MER1_type -1 208 1 505 273 120 19 chr6 5540293 5540493 -176874749 + MIR SINE MIR 37 260 -2 28 0 0 0 chr6 5540543 5540571 -176874671 + AT_rich Low_complexity Low_complexity 1 28 0 482 295 29 70 chr6 5541737 5541981 -176873261 - MIR SINE MIR -8 254 21 192 285 131 22 chr6 5541993 5542130 -176873112 + MIR3 SINE MIR 50 201 -7 240 250 53 13 chr6 5542938 5543014 -176872228 - L2 LINE L2 -921 2393 2315 803 240 6 95 chr6 5543225 5543499 -176871743 - L2 LINE L2 -4 3309 3065 2053 144 0 0 chr6 5543499 5543797 -176871445 + AluSx SINE Alu 1 298 -14 803 240 6 95 chr6 5543797 5543839 -176871403 - L2 LINE L2 -248 3065 3021 2305 260 28 5 chr6 5544226 5544838 -176870404 - L1ME1 LINE L1 -2 6164 5539 1964 227 40 62 chr6 5544838 5545384 -176869858 + MLT1F LTR MaLR 9 542 0 815 236 29 12 chr6 5545386 5545627 -176869615 - L1ME1 LINE L1 -633 5529 5285 292 243 43 14 chr6 5546874 5546944 -176868298 - L2 LINE L2 -6 3307 3236 251 324 14 0 chr6 5546981 5547055 -176868187 - L2 LINE L2 -8 3305 3231 1212 115 0 0 chr6 5547401 5547566 -176867676 + AluSq SINE Alu 148 312 -1 565 296 17 48 chr6 5547879 5548109 -176867133 + MIR SINE MIR 30 252 -10 195 42 0 0 chr6 5548443 5548467 -176866775 + (T)n Simple_repeat Simple_repeat 1 24 0 2090 152 19 14 chr6 5550785 5551147 -176864095 - MLT1B LTR MaLR 0 390 27 718 217 0 8 chr6 5551181 5551310 -176863932 - FLAM_A SINE Alu -5 128 1 22 56 0 0 chr6 5552066 5552102 -176863140 + AT_rich Low_complexity Low_complexity 1 36 0 321 286 125 0 chr6 5552796 5552908 -176862334 + L2 LINE L2 3139 3264 -8 1766 83 0 0 chr6 5553231 5553448 -176861794 - AluSg/x SINE Alu -18 294 78 362 293 73 20 chr6 5553784 5553934 -176861308 + MIR3 SINE MIR 39 196 -12 204 97 0 0 chr6 5554504 5554535 -176860707 + (TCCC)n Simple_repeat Simple_repeat 4 34 0 231 163 23 23 chr6 5554959 5555002 -176860240 + MIR SINE MIR 15 57 -205 342 0 0 0 chr6 5555261 5555299 -176859943 + (GA)n Simple_repeat Simple_repeat 1 38 0 204 262 87 58 chr6 5555567 5555670 -176859572 + MIR SINE MIR 139 244 -18 2073 114 7 0 chr6 5555804 5556122 -176859120 - AluSx SINE Alu 0 320 1 49 52 0 0 chr6 5557487 5557564 -176857678 + AT_rich Low_complexity Low_complexity 1 77 0 927 231 126 0 chr6 5557564 5557701 -176857541 + L1MA9 LINE L1 6000 6118 -194 297 0 0 0 chr6 5557701 5557734 -176857508 + (CA)n Simple_repeat Simple_repeat 2 34 0 261 0 0 0 chr6 5557733 5557762 -176857480 + (GA)n Simple_repeat Simple_repeat 2 30 0 * 927 231 126 0 chr6 5557734 5557871 -176857371 + L1MA9 LINE L1 6118 6277 -35 35 0 0 0 chr6 5557876 5557911 -176857331 + AT_rich Low_complexity Low_complexity 1 35 0 1987 228 56 22 chr6 5558282 5558909 -176856333 - MER114 LTR ERV 0 648 1 707 188 160 14 chr6 5559151 5559295 -176855947 - AluJb SINE Alu -12 300 136 352 250 0 0 chr6 5559423 5559495 -176855747 - MER94 DNA DNA -62 72 1 1268 63 0 2 chr6 5559795 5559986 -176855256 - MER11C LTR ERVK -790 281 1 22 56 0 0 chr6 5560186 5560222 -176855020 + AT_rich Low_complexity Low_complexity 1 36 0 701 203 26 46 chr6 5563250 5563403 -176851839 - MER58B DNA MER1_type -1 340 191 773 350 52 11 chr6 5566060 5566426 -176848816 - L3 LINE CR1 -823 754 374 406 248 80 16 chr6 5566441 5566566 -176848676 - MLT1K LTR MaLR -2 586 454 255 213 13 93 chr6 5566567 5566642 -176848600 - MIR SINE MIR -120 88 20 246 326 12 0 chr6 5566910 5566996 -176848246 - L2 LINE L2 0 3272 3186 195 224 45 60 chr6 5567068 5567135 -176848107 - L2 LINE L2 0 3313 3248 206 336 128 38 chr6 5567273 5567618 -176847624 - L2 LINE L2 -557 2757 2382 * 305 216 99 27 chr6 5567590 5567701 -176847541 + L2 LINE L2 3150 3268 -4 180 0 0 0 chr6 5568416 5568436 -176846806 + (TA)n Simple_repeat Simple_repeat 2 21 0 1402 159 18 57 chr6 5569096 5569379 -176845863 - AluJb SINE Alu -17 295 24 2159 147 0 0 chr6 5569743 5570055 -176845187 - AluSx SINE Alu 0 312 1 518 278 67 66 chr6 5570290 5570624 -176844618 - MLT1I LTR MaLR -7 443 71 201 320 102 61 chr6 5570810 5571007 -176844235 + MIR3 SINE MIR 4 208 0 529 154 83 0 chr6 5571548 5571653 -176843589 + MER33 DNA MER1_type 1 103 -97 2099 103 3 10 chr6 5571660 5571952 -176843290 + AluSx SINE Alu 6 295 -17 812 151 49 27 chr6 5571980 5572165 -176843077 + MER33 DNA MER1_type 133 321 -42 22 0 0 0 chr6 5573088 5573110 -176842132 + AT_rich Low_complexity Low_complexity 1 22 0 266 294 95 87 chr6 5573586 5573817 -176841425 - L2 LINE L2 -1395 1919 1687 26 0 0 0 chr6 5574040 5574066 -176841176 + AT_rich Low_complexity Low_complexity 1 26 0 23 33 0 0 chr6 5574529 5574559 -176840683 + AT_rich Low_complexity Low_complexity 1 30 0 245 298 75 11 chr6 5574935 5575029 -176840213 - L1MC/D LINE L1 -2268 5540 5441 29 0 0 0 chr6 5575429 5575458 -176839784 + AT_rich Low_complexity Low_complexity 1 29 0 252 263 105 42 chr6 5575760 5575855 -176839387 + L2 LINE L2 3210 3310 -3 303 198 18 90 chr6 5576374 5576485 -176838757 - MLT1J2 LTR MaLR -2 448 346 248 237 22 74 chr6 5576574 5576709 -176838533 - MLT1J1 LTR MaLR -281 165 38 879 248 57 5 chr6 5578922 5579132 -176836110 - MIR SINE MIR -25 237 17 2201 132 7 0 chr6 5580933 5581243 -176833999 - AluSq SINE Alu -1 312 1 21 36 0 0 chr6 5582510 5582538 -176832704 + AT_rich Low_complexity Low_complexity 1 28 0 653 170 0 10 chr6 5582538 5582638 -176832604 - FLAM_A SINE Alu -26 116 18 248 294 0 15 chr6 5582851 5582919 -176832323 + MIR SINE MIR 18 84 -178 660 247 52 81 chr6 5583142 5583413 -176831829 + MLT1L LTR MaLR 240 598 -9 412 257 71 0 chr6 5583415 5583528 -176831714 + MIR SINE MIR 78 198 -64 2300 95 0 0 chr6 5583638 5583932 -176831310 - AluSc SINE Alu -15 294 1 956 253 179 38 chr6 5584052 5584444 -176830798 + MLT1H LTR MaLR 100 546 -3 1760 274 6 4 chr6 5584480 5584961 -176830281 + L1MC4 LINE L1 7413 7894 -148 259 205 21 6 chr6 5584969 5585311 -176829931 + (TA)n Simple_repeat Simple_repeat 1 347 0 333 322 39 71 chr6 5585312 5585567 -176829675 - MLT1L LTR MaLR -201 414 168 2127 109 0 3 chr6 5586796 5587110 -176828132 + AluSg SINE Alu 1 313 0 190 107 0 0 chr6 5587082 5587139 -176828103 + (TAA)n Simple_repeat Simple_repeat 1 57 0 548 313 53 40 chr6 5587817 5588117 -176827125 - L2 LINE L2 -14 3299 2996 262 305 11 21 chr6 5588337 5588432 -176826810 - MIR3 SINE MIR -9 199 106 2692 177 59 4 chr6 5588588 5589097 -176826145 - L1MB4 LINE L1 -2 6178 5642 345 208 0 0 chr6 5589125 5589202 -176826040 + (CA)n Simple_repeat Simple_repeat 2 78 0 3373 186 10 46 chr6 5589216 5590323 -176824919 - L1MB4 LINE L1 -542 5632 3689 2192 77 70 0 chr6 5590371 5590657 -176824585 - AluY SINE Alu -5 306 1 215 341 0 0 chr6 5592177 5592259 -176822983 + CT-rich Low_complexity Low_complexity 3 84 0 2332 76 0 17 chr6 5593534 5593711 -176821531 - AluY SINE Alu -14 297 126 186 43 0 0 chr6 5593711 5593734 -176821508 + (TA)n Simple_repeat Simple_repeat 1 23 0 2332 76 0 17 chr6 5593734 5593858 -176821384 - AluY SINE Alu -185 126 1 479 257 18 0 chr6 5595493 5595606 -176819636 + MER5C DNA MER1_type 9 123 -201 1495 202 73 41 chr6 5595651 5595970 -176819272 - L1ME1 LINE L1 -5 6161 5854 4398 133 1 22 chr6 5595970 5596618 -176818624 - MER41B LTR ERV1 0 635 1 1495 202 73 41 chr6 5596618 5596798 -176818444 - L1ME1 LINE L1 -312 5854 5595 1097 207 58 5 chr6 5596798 5597006 -176818236 - MER20 DNA MER1_type 0 219 1 1495 202 73 41 chr6 5597006 5597093 -176818149 - L1ME1 LINE L1 -571 5595 5512 1309 203 16 10 chr6 5597087 5597398 -176817844 - L1MB4 LINE L1 -3178 2968 2656 * 2003 113 39 0 chr6 5597704 5597987 -176817255 - AluSg SINE Alu -16 294 1 943 285 188 4 chr6 5598216 5598710 -176816532 - MLT1E LTR MaLR -8 585 1 259 24 24 24 chr6 5599751 5599792 -176815450 + (TTTTA)n Simple_repeat Simple_repeat 1 41 0 2850 52 0 0 chr6 5599792 5600137 -176815105 - L1PA8 LINE L1 -24 6148 5804 2163 114 0 0 chr6 5600172 5600453 -176814789 + AluSq SINE Alu 1 281 -32 2064 88 26 4 chr6 5600557 5600830 -176814412 - AluSg SINE Alu -31 279 1 525 263 35 77 chr6 5600831 5601210 -176814032 - L1MCc LINE L1 -4889 1534 1459 2129 124 0 0 chr6 5601210 5601532 -176813710 - AluSx SINE Alu 0 322 1 525 263 35 77 chr6 5601532 5601803 -176813439 - L1MCc LINE L1 -4964 1459 1178 2952 71 3 0 chr6 5602201 5602555 -176812687 - THE1A LTR MaLR 0 355 1 1466 211 70 63 chr6 5603270 5603463 -176811779 - MLT1D LTR MaLR -2 503 313 2268 59 0 4 chr6 5603463 5603735 -176811507 - L1PA6 LINE L1 0 6154 5884 1466 211 70 63 chr6 5603735 5603939 -176811303 - MLT1D LTR MaLR -192 313 103 400 190 10 80 chr6 5603990 5604090 -176811152 - MLT1D LTR MaLR -410 95 3 1428 181 63 112 chr6 5604092 5604502 -176810740 - MLT1D-int LTR MaLR 0 1371 982 1362 191 40 27 chr6 5604547 5604846 -176810396 - AluJb SINE Alu -4 308 6 2785 208 58 88 chr6 5604945 5605856 -176809386 - MLT1D-int LTR MaLR -486 885 2 2182 208 62 15 chr6 5605858 5606338 -176808904 - MLT1D LTR MaLR -1 504 2 202 333 0 13 chr6 5607675 5607753 -176807489 - MIR SINE MIR -73 189 113 702 166 159 7 chr6 5607992 5608143 -176807099 - MER5A DNA MER1_type -6 183 10 490 305 81 20 chr6 5608894 5609140 -176806102 - MIR SINE MIR -1 261 1 2289 138 14 11 chr6 5609260 5609614 -176805628 + THE1A LTR MaLR 1 355 0 281 242 0 0 chr6 5610222 5610288 -176804954 + MIR SINE MIR 197 262 0 228 67 0 0 chr6 5610958 5610988 -176804254 + (GAAA)n Simple_repeat Simple_repeat 3 32 0 274 242 0 0 chr6 5611475 5611541 -176803701 - MLT1L LTR MaLR -1 614 549 463 276 112 12 chr6 5611589 5611759 -176803483 - MLT1L LTR MaLR -204 411 225 1830 67 0 59 chr6 5612799 5613090 -176802152 - AluY SINE Alu 0 318 43 1780 157 10 16 chr6 5613401 5613714 -176801528 + AluJo SINE Alu 1 311 -1 655 307 84 21 chr6 5613918 5614299 -176800943 + L1M4 LINE L1 4615 5019 -1127 1469 294 25 23 chr6 5614481 5615128 -176800114 - L1M4 LINE L1 -2123 4023 3373 2048 142 0 6 chr6 5615128 5615439 -176799803 + AluSx SINE Alu 1 309 -3 1469 294 25 23 chr6 5615439 5615477 -176799765 - L1M4 LINE L1 -2773 3373 3337 21 36 0 0 chr6 5615521 5615549 -176799693 + AT_rich Low_complexity Low_complexity 1 28 0 498 311 81 43 chr6 5615577 5616280 -176798962 - L1MEc LINE L1 -734 1609 443 297 0 0 0 chr6 5616979 5617012 -176798230 + (CA)n Simple_repeat Simple_repeat 2 34 0 1359 111 11 0 chr6 5617077 5617267 -176797975 - AluSq SINE Alu -1 312 121 3342 122 29 10 chr6 5617286 5617796 -176797446 - LTR9B LTR ERV1 -83 561 42 17046 93 20 10 chr6 5617797 5620132 -176795110 - HUERS-P3b LTR ERV1 -1 7417 4984 396 227 118 17 chr6 5620467 5620586 -176794656 + L2 LINE L2 3142 3272 0 248 238 20 30 chr6 5620757 5620858 -176794384 + (CAGAGA)n Simple_repeat Simple_repeat 2 101 0 230 368 98 0 chr6 5621021 5621195 -176794047 - MIR3 SINE MIR -11 197 7 1757 118 18 4 chr6 5621575 5621854 -176793388 + L1M3 LINE L1 5290 5572 -611 840 226 0 0 chr6 5621880 5622035 -176793207 - LTR8 LTR ERV1 -536 155 1 6099 90 4 5 chr6 5622035 5622837 -176792405 + HUERS-P3b LTR ERV1 3073 3873 -3545 1866 98 11 11 chr6 5622829 5623104 -176792138 + HUERS-P3b LTR ERV1 4713 4987 -2431 * 2708 122 48 24 chr6 5625094 5625512 -176789730 - MSTA LTR MaLR 0 428 1 429 290 9 0 chr6 5625741 5625848 -176789394 + MER5A DNA MER1_type 82 189 0 272 306 90 9 chr6 5626144 5626255 -176788987 - L2 LINE L2 0 3272 3153 230 218 0 18 chr6 5626316 5626371 -176788871 - MIR SINE MIR 0 262 209 201 292 250 7 chr6 5626449 5626593 -176788649 - MIR SINE MIR -62 200 22 1978 85 31 4 chr6 5627143 5627421 -176787821 - AluY SINE Alu 0 300 16 268 336 9 0 chr6 5627464 5627574 -176787668 + L1ME2 LINE L1 5709 5819 -1989 2191 216 147 21 chr6 5627610 5627800 -176787442 + MER82 DNA MER2_type 1 166 -487 1175 221 34 17 chr6 5627800 5628035 -176787207 + MER8 DNA MER2_type 1 239 0 2191 216 147 21 chr6 5628035 5628424 -176786818 + MER82 DNA MER2_type 166 653 0 2068 226 50 69 chr6 5628453 5629148 -176786094 - L1MC4 LINE L1 -156 7886 7205 2990 79 5 10 chr6 5629165 5629569 -176785673 + MLT2A1 LTR ERVL 3 404 -40 182 56 14 83 chr6 5629570 5629642 -176785600 + (TA)n Simple_repeat Simple_repeat 1 67 0 339 75 75 0 chr6 5629642 5629695 -176785547 + MLT2A1 LTR ERVL 397 453 0 786 178 11 123 chr6 5629696 5629965 -176785277 - L1MC4 LINE L1 -910 7132 6894 453 232 32 8 chr6 5629957 5630082 -176785160 + L1ME2 LINE L1 6023 6150 -14 * 1582 224 124 30 chr6 5630084 5630575 -176784667 + L1MC4 LINE L1 6354 6890 -1152 293 24 49 0 chr6 5630786 5630827 -176784415 + (TTTA)n Simple_repeat Simple_repeat 2 44 0 2150 88 0 0 chr6 5630832 5631094 -176784148 - AluY SINE Alu -30 281 20 2432 87 0 0 chr6 5631540 5631851 -176783391 + AluY SINE Alu 1 311 0 705 224 156 29 chr6 5631861 5632066 -176783176 + MIR SINE MIR 11 241 -21 2289 81 0 42 chr6 5632277 5632584 -176782658 - AluSx SINE Alu -16 296 3 258 156 47 16 chr6 5632925 5632989 -176782253 + T-rich Low_complexity Low_complexity 3 68 0 2187 123 0 0 chr6 5633022 5633324 -176781918 + AluSg SINE Alu 1 302 -8 227 100 0 25 chr6 5633326 5633366 -176781876 + (GGAA)n Simple_repeat Simple_repeat 4 42 0 192 61 61 0 chr6 5633588 5633621 -176781621 + MIR SINE MIR 116 150 -112 218 240 0 0 chr6 5634153 5634203 -176781039 - L2 LINE L2 -2 3270 3221 478 307 42 16 chr6 5635378 5635567 -176779675 - MIR SINE MIR 0 262 69 193 143 0 29 chr6 5636402 5636437 -176778805 + MIR SINE MIR 109 142 -120 797 184 126 26 chr6 5636610 5636800 -176778442 - MIR SINE MIR -18 244 36 306 0 0 0 chr6 5637121 5637155 -176778087 + (CA)n Simple_repeat Simple_repeat 2 35 0 205 298 0 18 chr6 5637519 5637576 -176777666 + CT-rich Low_complexity Low_complexity 1 56 0 2608 155 29 31 chr6 5638193 5638710 -176776532 - L1MA9 LINE L1 -22 6290 5775 227 241 48 0 chr6 5638710 5638793 -176776449 + (CATATA)n Simple_repeat Simple_repeat 6 92 0 1142 165 26 35 chr6 5638794 5639024 -176776218 - L1MA9 LINE L1 -524 5788 5561 * 3956 171 58 1 chr6 5639019 5639660 -176775582 - L1MA9 LINE L1 -1777 4369 3675 207 0 0 0 chr6 5639660 5639683 -176775559 + (TTTC)n Simple_repeat Simple_repeat 2 24 0 3956 171 58 1 chr6 5639683 5639818 -176775424 - L1MA9 LINE L1 -2471 3675 3549 371 285 7 35 chr6 5640109 5640253 -176774989 + MIR SINE MIR 67 206 -56 362 220 156 0 chr6 5640603 5640712 -176774530 - MER103 DNA DNA -38 128 3 400 247 227 0 chr6 5640769 5640919 -176774323 + MIR SINE MIR 18 201 -61 416 237 209 38 chr6 5642169 5642380 -176772862 + MIR SINE MIR 14 260 -2 501 298 44 24 chr6 5642904 5643152 -176772090 + MIR SINE MIR 5 257 -5 28 0 0 0 chr6 5644842 5644870 -176770372 + AT_rich Low_complexity Low_complexity 1 28 0 2142 137 3 6 chr6 5645115 5645428 -176769814 + AluJb SINE Alu 1 312 0 1471 217 209 14 chr6 5647459 5648119 -176767123 - LTR50 LTR ERVL -1 794 6 273 240 91 25 chr6 5648791 5648912 -176766330 - MIR SINE MIR -74 188 60 249 298 64 0 chr6 5649030 5649124 -176766118 - MIR SINE MIR -46 216 117 1727 169 14 0 chr6 5651121 5651400 -176763842 + AluJo SINE Alu 5 287 -25 231 146 0 0 chr6 5651408 5651449 -176763793 + (TAAG)n Simple_repeat Simple_repeat 1 41 0 631 118 55 31 chr6 5652608 5652735 -176762507 - L1MB8 LINE L1 -19 6159 6030 1341 198 71 39 chr6 5653877 5654215 -176761027 + MLT1A1 LTR MaLR 6 354 -11 2510 77 0 6 chr6 5654252 5654564 -176760678 + AluSp SINE Alu 1 310 -3 587 310 45 4 chr6 5654586 5654828 -176760414 + MIR SINE MIR 8 259 -3 2396 92 3 0 chr6 5655380 5655683 -176759559 + AluSc SINE Alu 1 304 -5 232 234 234 0 chr6 5655937 5656014 -176759228 - MIR SINE MIR -54 208 114 347 147 80 13 chr6 5656029 5656104 -176759138 - REP3 LTR ERV 0 562 483 1201 187 5 5 chr6 5656105 5656324 -176758918 - AluJb SINE Alu -9 303 85 2023 206 71 21 chr6 5656324 5656436 -176758806 - REP3 LTR ERV -70 492 387 2018 202 53 18 chr6 5656436 5656887 -176758355 - MLT1C LTR MaLR 0 467 1 2023 206 71 21 chr6 5656887 5657240 -176758002 - REP3 LTR ERV -175 387 4 617 264 16 21 chr6 5657374 5657567 -176757675 - LTR16A LTR ERVL -1 449 258 521 299 127 22 chr6 5658857 5659502 -176755740 + L1MEd LINE L1 860 1668 -822 922 264 69 27 chr6 5659571 5660019 -176755223 - LTR40a LTR ERVL -6 513 97 22 35 0 0 chr6 5660092 5660121 -176755121 + AT_rich Low_complexity Low_complexity 1 29 0 420 20 0 0 chr6 5660294 5660343 -176754899 + (TG)n Simple_repeat Simple_repeat 2 50 0 257 272 41 54 chr6 5661006 5661153 -176754089 - L1M4 LINE L1 -3276 2870 2726 236 393 0 0 chr6 5662429 5662597 -176752645 + (CCA)n Simple_repeat Simple_repeat 1 168 0 23 33 0 0 chr6 5663319 5663349 -176751893 + AT_rich Low_complexity Low_complexity 1 30 0 1167 180 201 14 chr6 5663376 5663665 -176751577 - MER2 DNA MER2_type 0 344 2 434 349 92 34 chr6 5666694 5666986 -176748256 - L2 LINE L2 -10 3262 2954 238 262 12 48 chr6 5667142 5667226 -176748016 - L2 LINE L2 -531 2783 2703 530 326 80 46 chr6 5667234 5667410 -176747832 - HAL1b LINE L1 -437 911 742 2205 76 40 7 chr6 5667410 5667711 -176747531 - AluY SINE Alu 0 311 1 530 326 80 46 chr6 5667711 5668037 -176747205 - HAL1b LINE L1 -606 742 392 479 259 75 49 chr6 5668043 5668309 -176746933 - HAL1b LINE L1 -987 361 89 255 122 0 0 chr6 5669023 5669072 -176746170 + (A)n Simple_repeat Simple_repeat 1 49 0 256 159 302 0 chr6 5669245 5669308 -176745934 + MLT1J LTR MaLR 353 434 -77 1578 112 29 8 chr6 5669453 5669694 -176745548 - Tigger4(Zombi) DNA MER2_type 0 2731 2486 430 156 0 0 chr6 5669685 5669749 -176745493 - Tigger4(Zombi) DNA MER2_type -2666 65 2 * 23 33 0 0 chr6 5670145 5670175 -176745067 + AT_rich Low_complexity Low_complexity 1 30 0 589 258 165 56 chr6 5670448 5670909 -176744333 + MLT1J LTR MaLR 1 511 0 854 254 26 10 chr6 5671002 5671195 -176744047 - MER58A DNA MER1_type -28 196 1 815 132 101 141 chr6 5673084 5673311 -176741931 - MER20 DNA MER1_type -1 218 1 1421 178 113 14 chr6 5674128 5674403 -176740839 - AluJo SINE Alu -10 302 1 1036 163 15 49 chr6 5675432 5675635 -176739607 + MLT1A1 LTR MaLR 1 196 -169 999 189 25 15 chr6 5675648 5675849 -176739393 + MLT1A1 LTR MaLR 163 365 0 279 314 146 11 chr6 5675999 5676184 -176739058 + MIR SINE MIR 7 216 -46 21 0 0 0 chr6 5676417 5676438 -176738804 + AT_rich Low_complexity Low_complexity 1 21 0 2280 115 0 0 chr6 5676444 5676749 -176738493 + AluSg SINE Alu 1 305 -5 23 0 0 0 chr6 5677828 5677851 -176737391 + GC_rich Low_complexity Low_complexity 1 23 0 1529 122 37 29 chr6 5679782 5680028 -176735214 - Tigger3(Golem) DNA MER2_type -2 3027 2780 1130 207 10 0 chr6 5680025 5680228 -176735014 - Tigger3(Golem) DNA MER2_type -2824 205 1 * 724 181 111 23 chr6 5685407 5685578 -176729664 - L1MB5 LINE L1 0 6174 5989 397 188 10 10 chr6 5685579 5685675 -176729567 + CT-rich Low_complexity Low_complexity 1 96 0 1188 152 24 5 chr6 5685683 5685893 -176729349 - L1MB5 LINE L1 -711 5467 5254 326 185 12 0 chr6 5685946 5686027 -176729215 + CT-rich Low_complexity Low_complexity 3 84 0 745 217 0 0 chr6 5686146 5686275 -176728967 - FLAM_A SINE Alu -4 129 1 2385 89 26 0 chr6 5686276 5686579 -176728663 - AluSx SINE Alu 0 312 2 352 312 89 58 chr6 5686779 5687263 -176727979 - L1M4 LINE L1 -754 5392 4894 1641 146 45 68 chr6 5687314 5687622 -176727620 - AluJo SINE Alu -11 301 1 426 273 73 12 chr6 5687992 5688157 -176727085 + MIR SINE MIR 5 179 -83 202 204 0 45 chr6 5688157 5688201 -176727041 + L2 LINE L2 3221 3262 -10 223 281 34 0 chr6 5690463 5690552 -176724690 - MIR SINE MIR -152 110 19 2191 125 74 11 chr6 5690635 5691002 -176724240 - MLT1B LTR MaLR 0 390 1 2421 91 0 0 chr6 5691295 5691603 -176723639 + AluSx SINE Alu 1 308 -4 197 231 215 0 chr6 5692086 5692151 -176723091 + MIR SINE MIR 42 120 -88 234 0 0 0 chr6 5693152 5693178 -176722064 + (TG)n Simple_repeat Simple_repeat 2 27 0 1586 194 40 65 chr6 5693534 5693982 -176721260 + LTR56 LTR ERV1 9 445 0 2034 137 0 0 chr6 5694296 5694609 -176720633 - AluSx SINE Alu 0 313 1 251 250 232 9 chr6 5694962 5695074 -176720168 + L2 LINE L2 3175 3311 -2 241 268 0 0 chr6 5695108 5695164 -176720078 + (TATATG)n Simple_repeat Simple_repeat 4 59 0 233 250 0 0 chr6 5695165 5695221 -176720021 - L1MD3 LINE L1 -1328 6667 6612 1791 150 33 13 chr6 5697219 5697525 -176717717 - AluJb SINE Alu 0 312 1 323 102 20 0 chr6 5697616 5697665 -176717577 - Alu SINE Alu -244 57 8 276 270 51 29 chr6 5699346 5699483 -176715759 + MIR3 SINE MIR 65 204 -4 2369 123 6 3 chr6 5699587 5699929 -176715313 + MER2 DNA MER2_type 1 343 -1 216 230 122 0 chr6 5700276 5700350 -176714892 + L2 LINE L2 3186 3268 -4 624 276 84 10 chr6 5700872 5701075 -176714167 + MIR SINE MIR 7 224 -38 229 239 28 28 chr6 5701620 5701691 -176713551 + CT-rich Low_complexity Low_complexity 1 71 0 23 54 0 0 chr6 5701769 5701806 -176713436 + AT_rich Low_complexity Low_complexity 1 37 0 523 229 15 8 chr6 5701829 5701960 -176713282 + L2 LINE L2 3182 3313 0 703 288 14 18 chr6 5702585 5702807 -176712435 - MIR SINE MIR -36 226 6 195 42 0 0 chr6 5703268 5703292 -176711950 + (T)n Simple_repeat Simple_repeat 1 24 0 1988 72 12 0 chr6 5703539 5703789 -176711453 - AluY SINE Alu -58 253 1 230 326 8 47 chr6 5703877 5704006 -176711236 + MIR SINE MIR 28 151 -111 1289 257 58 58 chr6 5704006 5704488 -176710754 + HAL1 LINE L1 1 482 -2025 724 268 38 1 chr6 5704691 5704904 -176710338 - MIR SINE MIR -13 249 31 591 275 35 45 chr6 5705123 5705410 -176709832 + HAL1 LINE L1 2224 2507 0 257 372 0 0 chr6 5706427 5706513 -176708729 - L2 LINE L2 -13 3259 3174 230 290 194 0 chr6 5706734 5706827 -176708415 - L2 LINE L2 0 3313 3203 2403 161 37 37 chr6 5707752 5708186 -176707056 + Tigger2a DNA MER2_type 1 434 0 1197 207 27 3 chr6 5708385 5708828 -176706414 - MLT1D LTR MaLR 0 505 1 2286 104 7 0 chr6 5709563 5709861 -176705381 - AluSx SINE Alu -12 300 1 250 218 46 11 chr6 5710054 5710141 -176705101 + (TA)n Simple_repeat Simple_repeat 1 90 0 742 222 81 30 chr6 5710835 5711015 -176704227 + MIR SINE MIR 17 213 -49 1976 109 4 14 chr6 5711015 5711290 -176703952 + AluSp SINE Alu 33 304 -9 742 222 81 30 chr6 5711290 5711343 -176703899 + MIR SINE MIR 213 262 0 296 236 0 28 chr6 5712195 5712267 -176702975 - MIR3 SINE MIR -1 207 138 184 288 25 50 chr6 5712400 5712480 -176702762 - L2 LINE L2 -77 3195 3118 204 222 0 0 chr6 5713143 5713188 -176702054 + (TTCA)n Simple_repeat Simple_repeat 4 48 0 1840 169 0 16 chr6 5713374 5713682 -176701560 + AluJb SINE Alu 1 303 -9 884 305 150 27 chr6 5713809 5715026 -176700216 - L2 LINE L2 -420 2894 1528 817 234 53 13 chr6 5715753 5715980 -176699262 + MIR SINE MIR 14 249 -13 270 196 144 21 chr6 5718006 5718103 -176697139 + L3 LINE CR1 1278 1386 -191 4076 111 37 0 chr6 5719639 5720235 -176695007 + L1PA13 LINE L1 5546 6163 0 2197 115 0 0 chr6 5720250 5720546 -176694696 + AluSg SINE Alu 1 296 -14 350 247 22 0 chr6 5720688 5720777 -176694465 - MIR3 SINE MIR -4 204 114 228 316 13 3 chr6 5721592 5721684 -176693558 + MIR SINE MIR 12 106 -102 2346 94 3 10 chr6 5721699 5722008 -176693234 - AluSq SINE Alu -6 307 1 221 242 133 55 chr6 5722009 5722137 -176693105 + MIR SINE MIR 88 225 -37 198 327 158 0 chr6 5723410 5723511 -176691731 + L2 LINE L2 3137 3253 -19 240 111 0 0 chr6 5727206 5727242 -176688000 + (A)n Simple_repeat Simple_repeat 1 36 0 307 354 12 43 chr6 5727848 5728012 -176687230 - MIR3 SINE MIR -27 181 23 181 227 0 0 chr6 5728099 5728143 -176687099 + L2 LINE L2 3261 3304 -9 360 0 0 0 chr6 5728212 5728252 -176686990 + (CA)n Simple_repeat Simple_repeat 2 41 0 191 328 17 0 chr6 5730795 5730853 -176684389 + L2 LINE L2 3128 3186 -86 329 226 0 43 chr6 5733623 5733716 -176681526 - L1ME4a LINE L1 -74 6047 5959 701 288 133 20 chr6 5733822 5734307 -176680935 + L1ME4a LINE L1 5310 5837 -284 299 272 65 0 chr6 5734444 5734536 -176680706 + L1ME4a LINE L1 5997 6094 -27 463 289 187 18 chr6 5735644 5736402 -176678840 - L2 LINE L2 -1 3312 2376 3487 71 2 0 chr6 5736616 5737067 -176678175 - L1PA8 LINE L1 0 6172 5721 293 222 28 42 chr6 5739091 5739163 -176676079 + L2 LINE L2 3193 3263 -9 44715 42 4 0 chr6 5739213 5745349 -176669893 - L1PA4 LINE L1 -1 6154 1 204 340 0 0 chr6 5745482 5745535 -176669707 - L2 LINE L2 -15 3257 3205 1398 253 172 13 chr6 5746579 5747111 -176668131 - MLT1G LTR MaLR -3 587 14 24 0 0 0 chr6 5747539 5747563 -176667679 + AT_rich Low_complexity Low_complexity 1 24 0 1531 176 7 27 chr6 5747734 5748035 -176667207 + AluJo SINE Alu 1 295 -17 662 256 68 11 chr6 5748476 5748667 -176666575 - MIR SINE MIR 0 262 61 590 297 116 19 chr6 5748904 5749189 -176666053 + L1ME4a LINE L1 5315 5625 -599 386 288 72 68 chr6 5749551 5749801 -176665441 + L1ME4a LINE L1 5864 6114 -7 22 0 0 0 chr6 5750897 5750919 -176664323 + AT_rich Low_complexity Low_complexity 1 22 0 2091 141 128 16 chr6 5751136 5751519 -176663723 - MSTA LTR MaLR -2 426 1 378 250 98 8 chr6 5751742 5751874 -176663368 - MLT1I LTR MaLR 0 409 266 483 170 50 0 chr6 5752401 5752501 -176662741 + MER5A DNA MER1_type 9 113 -76 1624 88 0 5 chr6 5752523 5752739 -176662503 - AluSg/x SINE Alu -15 295 81 419 259 196 7 chr6 5752783 5752926 -176662316 - MER5B DNA MER1_type -3 175 6 1970 94 36 0 chr6 5753421 5753696 -176661546 - AluSg SINE Alu -14 296 12 1979 159 47 6 chr6 5757110 5757450 -176657792 - MLT1A1 LTR MaLR -1 364 11 428 193 34 0 chr6 5757887 5757975 -176657267 + MIR SINE MIR 122 212 -50 24 0 0 0 chr6 5758021 5758045 -176657197 + AT_rich Low_complexity Low_complexity 1 24 0 2133 160 0 3 chr6 5759008 5759345 -176655897 - MER1B DNA MER1_type -1 336 1 216 290 110 100 chr6 5760834 5761134 -176654108 - L2 LINE L2 -79 3193 2891 1620 142 0 12 chr6 5761685 5761939 -176653303 - AluJo SINE Alu -24 288 38 336 216 0 0 chr6 5762684 5762781 -176652461 + (TG)n Simple_repeat Simple_repeat 1 97 0 1508 293 75 11 chr6 5763385 5764000 -176651242 + L1MEc LINE L1 31 684 -5712 2831 169 136 120 chr6 5764001 5764300 -176650942 + L1MC3 LINE L1 6757 7049 -736 276 30 0 0 chr6 5764300 5764333 -176650909 + (TGAA)n Simple_repeat Simple_repeat 4 36 0 2831 169 136 120 chr6 5764333 5764368 -176650874 + L1MC3 LINE L1 7049 7082 -703 262 234 26 13 chr6 5764368 5764445 -176650797 + MLT1F1 LTR MaLR 33 110 -457 2831 169 136 120 chr6 5764445 5765045 -176650197 + L1MC3 LINE L1 7082 7785 0 24 0 0 0 chr6 5765117 5765141 -176650101 + AT_rich Low_complexity Low_complexity 1 24 0 248 382 71 12 chr6 5765521 5765691 -176649551 - MIR SINE MIR -56 206 27 22 0 0 0 chr6 5766981 5767003 -176648239 + AT_rich Low_complexity Low_complexity 1 22 0 2152 116 0 0 chr6 5767755 5768058 -176647184 + AluSx SINE Alu 1 303 -9 650 301 74 5 chr6 5768070 5768286 -176646956 - MIR SINE MIR -19 243 13 3618 170 29 42 chr6 5768341 5769105 -176646137 - L1MB8 LINE L1 -51 6127 5374 331 252 119 50 chr6 5769114 5769392 -176645850 - L1MC5 LINE L1 -182 7779 7483 3714 169 69 90 chr6 5769449 5770358 -176644884 - MER21A LTR ERV1 -26 905 16 363 44 0 0 chr6 5770358 5770403 -176644839 + (TG)n Simple_repeat Simple_repeat 2 46 0 914 154 37 56 chr6 5770444 5770658 -176644584 - L1MC5 LINE L1 -494 7467 7258 21 0 0 0 chr6 5770714 5770735 -176644507 + AT_rich Low_complexity Low_complexity 1 21 0 257 143 24 0 chr6 5770766 5770808 -176644434 - L1MC5 LINE L1 -737 7224 7182 252 0 0 0 chr6 5770921 5770949 -176644293 + (TA)n Simple_repeat Simple_repeat 1 28 0 2019 108 4 0 chr6 5770949 5771226 -176644016 - AluSx SINE Alu -34 278 1 322 333 63 24 chr6 5771287 5771413 -176643829 + L2 LINE L2 3142 3272 0 1775 164 3 22 chr6 5772113 5772490 -176642752 + AluJb SINE Alu 1 371 0 208 273 73 0 chr6 5773525 5773580 -176641662 - L2 LINE L2 -16 3297 3239 5117 183 86 64 chr6 5773645 5773778 -176641464 - Charlie1a DNA MER1_type -1325 1436 1307 1419 179 13 43 chr6 5773778 5774080 -176641162 + AluJo SINE Alu 3 295 -17 5117 183 86 64 chr6 5774080 5775347 -176639895 - Charlie1a DNA MER1_type -1454 1307 6 275 317 54 32 chr6 5775547 5775768 -176639474 - L2 LINE L2 -361 2953 2728 364 311 92 41 chr6 5776356 5776552 -176638690 + MIR SINE MIR 6 211 -51 385 329 35 21 chr6 5777735 5777878 -176637364 - L3 LINE CR1 -154 1423 1279 265 250 125 39 chr6 5777880 5778008 -176637234 - L2 LINE L2 -16 3297 3159 640 293 139 5 chr6 5778449 5778664 -176636578 + MIR SINE MIR 13 256 -6 2062 106 3 0 chr6 5778666 5778959 -176636283 + AluSx SINE Alu 1 294 -18 294 269 123 58 chr6 5780010 5780181 -176635061 + MIR SINE MIR 67 248 -14 1029 212 5 5 chr6 5782869 5783067 -176632175 - MER20 DNA MER1_type -21 198 1 800 217 128 10 chr6 5783801 5784004 -176631238 - MIR SINE MIR 0 262 36 249 313 21 10 chr6 5784267 5784363 -176630879 + CT-rich Low_complexity Low_complexity 1 97 0 391 200 27 0 chr6 5785141 5785216 -176630026 - L2 LINE L2 -11 3261 3185 253 312 11 11 chr6 5785353 5785446 -176629796 + MIR SINE MIR 162 254 -8 198 329 89 0 chr6 5785897 5785976 -176629266 - L2 LINE L2 -17 3255 3170 487 299 77 11 chr6 5786783 5787013 -176628229 + MIR SINE MIR 13 261 -1 367 357 14 0 chr6 5787602 5787745 -176627497 - MIR SINE MIR -10 252 108 318 67 0 0 chr6 5787815 5787860 -176627382 + (CATA)n Simple_repeat Simple_repeat 2 46 0 424 272 32 10 chr6 5788232 5788343 -176626899 - MIR SINE MIR -88 120 6 1579 203 73 35 chr6 5789019 5789443 -176625799 - MLT1F LTR MaLR -102 440 1 2192 127 0 0 chr6 5790263 5790555 -176624687 + AluSg SINE Alu 1 292 -18 306 247 68 66 chr6 5790653 5790902 -176624340 + MLT1J LTR MaLR 126 364 -147 195 100 0 0 chr6 5790949 5790979 -176624263 + (TTG)n Simple_repeat Simple_repeat 2 31 0 1799 164 11 7 chr6 5790981 5791262 -176623980 - AluJo SINE Alu -30 282 1 1071 176 53 13 chr6 5791984 5792211 -176623031 - L1MD2 LINE L1 -294 6065 5830 950 129 0 8 chr6 5792226 5792358 -176622884 + FLAM_C SINE Alu 1 131 -2 585 297 91 18 chr6 5792869 5793088 -176622154 - MIR SINE MIR -15 247 13 2387 99 0 3 chr6 5794651 5794964 -176620278 - AluSx SINE Alu 0 312 1 540 290 43 6 chr6 5797422 5797584 -176617658 - MIR SINE MIR -75 187 20 23 68 0 0 chr6 5797862 5797906 -176617336 + AT_rich Low_complexity Low_complexity 1 44 0 1909 159 0 3 chr6 5798558 5798848 -176616394 - AluJb SINE Alu -19 293 5 188 282 68 68 chr6 5799685 5799788 -176615454 + L2 LINE L2 3158 3260 -12 1392 237 90 62 chr6 5799938 5800518 -176614724 - L2 LINE L2 -221 3092 2482 462 283 7 7 chr6 5800521 5800659 -176614583 - MLT1F LTR MaLR -404 138 1 321 236 0 2 chr6 5801641 5801715 -176613527 - MIR SINE MIR -84 124 52 301 223 204 51 chr6 5802317 5802474 -176612768 - L2 LINE L2 -571 2743 2563 525 309 84 50 chr6 5802998 5803318 -176611924 - L2 LINE L2 -1 3271 2941 311 307 111 33 chr6 5805730 5805883 -176609359 - MIR3 SINE MIR -24 184 20 223 317 120 7 chr6 5805955 5806097 -176609145 + MIR SINE MIR 61 218 -44 282 292 62 23 chr6 5807094 5807300 -176607942 - MIR SINE MIR -1 261 2 649 312 113 34 chr6 5807545 5807895 -176607347 - L1MEc LINE L1 -753 1737 1303 1541 295 108 37 chr6 5807913 5808216 -176607026 - L1MEc LINE L1 -4873 1246 966 2337 66 33 0 chr6 5808216 5808518 -176606724 - L1PA7 LINE L1 -4 6150 5839 1541 295 108 37 chr6 5808518 5809012 -176606230 - L1MEc LINE L1 -5153 966 352 189 0 0 0 chr6 5809012 5809033 -176606209 + (TTTTG)n Simple_repeat Simple_repeat 2 22 0 1541 295 108 37 chr6 5809033 5809296 -176605946 - L1MEc LINE L1 -5767 352 109 1860 133 154 16 chr6 5809330 5809699 -176605543 - MSTA LTR MaLR 0 428 9 279 257 14 40 chr6 5810658 5810732 -176604510 + MIR SINE MIR 16 87 -175 264 315 41 20 chr6 5811246 5811392 -176603850 + MARNA DNA Mariner 196 344 -242 318 356 19 0 chr6 5812065 5812169 -176603073 - MIR SINE MIR -109 153 48 517 307 21 107 chr6 5812175 5812550 -176602692 + L2 LINE L2 2930 3272 0 248 285 220 32 chr6 5812698 5812884 -176602358 + L3 LINE CR1 1259 1479 -98 180 235 78 0 chr6 5812867 5812918 -176602324 + MIR3 SINE MIR 151 205 -3 * 180 0 0 0 chr6 5814821 5814841 -176600401 + (A)n Simple_repeat Simple_repeat 1 20 0 316 122 0 0 chr6 5815039 5815088 -176600154 - L1MB4 LINE L1 -302 5878 5830 243 182 164 18 chr6 5815098 5815153 -176600089 - MIR SINE MIR -119 143 81 274 268 141 64 chr6 5815201 5815421 -176599821 - MIR SINE MIR 0 262 26 1602 159 0 23 chr6 5816233 5816490 -176598752 + AluJo SINE Alu 52 302 -10 538 292 58 6 chr6 5816513 5816684 -176598558 - MIR3 SINE MIR -8 200 21 715 276 43 17 chr6 5817088 5817320 -176597922 - MIR SINE MIR -16 246 9 190 253 242 10 chr6 5818800 5818899 -176596343 + L2 LINE L2 3150 3271 -1 2799 161 61 37 chr6 5819671 5820077 -176595165 - L1MB5 LINE L1 -1 6173 5745 2341 89 0 0 chr6 5820077 5820368 -176594874 - AluSx SINE Alu -21 291 1 2799 161 61 37 chr6 5820368 5820582 -176594660 - L1MB5 LINE L1 -429 5745 5538 718 255 34 24 chr6 5820582 5820790 -176594452 + MIR SINE MIR 43 252 -10 2180 193 22 12 chr6 5821619 5822301 -176592941 - L1MB5 LINE L1 -658 5526 4839 288 77 0 0 chr6 5823404 5823443 -176591799 + (CTG)n Simple_repeat Simple_repeat 1 39 0 234 361 36 36 chr6 5823444 5823610 -176591632 - MIR3 SINE MIR -24 184 19 274 327 30 42 chr6 5823931 5824096 -176591146 + MER5B DNA MER1_type 13 175 -3 1385 161 94 58 chr6 5825760 5825948 -176589294 - MER7A DNA MER2_type -2692 346 141 2476 159 31 2 chr6 5825948 5826364 -176588878 + MSTA LTR MaLR 1 428 0 1385 161 94 58 chr6 5826364 5826504 -176588738 - MER7A DNA MER2_type -2897 141 8 207 330 33 22 chr6 5826585 5826676 -176588566 - MIR SINE MIR -79 183 92 1432 139 28 5 chr6 5826796 5827012 -176588230 + AluJo SINE Alu 86 306 -6 360 269 40 74 chr6 5827357 5827506 -176587736 + MIR SINE MIR 119 262 0 373 335 30 30 chr6 5827519 5827683 -176587559 - MIR3 SINE MIR -5 203 40 218 303 15 0 chr6 5828632 5828698 -176586544 - L2 LINE L2 -49 3223 3157 208 147 0 0 chr6 5829373 5829407 -176585835 + (CAAA)n Simple_repeat Simple_repeat 1 34 0 230 190 172 78 chr6 5829547 5829663 -176585579 + MIR SINE MIR 27 153 -109 1517 203 80 45 chr6 5830402 5830951 -176584291 + L1ME LINE L1 4860 5423 -741 481 183 44 36 chr6 5830949 5831086 -176584156 + L1ME2 LINE L1 5918 6055 -109 * 225 0 0 0 chr6 5831086 5831111 -176584131 + (T)n Simple_repeat Simple_repeat 1 25 0 426 20 0 0 chr6 5831142 5831193 -176584049 + (TC)n Simple_repeat Simple_repeat 2 52 0 807 157 22 30 chr6 5831193 5831327 -176583915 - FLAM_C SINE Alu 0 133 1 564 179 8 8 chr6 5831328 5831445 -176583797 + L1ME2 LINE L1 6039 6155 -9 540 246 63 0 chr6 5832256 5832398 -176582844 + MIR SINE MIR 56 206 -56 7355 51 0 0 chr6 5832475 5833638 -176581604 - L1PA6 LINE L1 0 6154 4995 707 148 15 15 chr6 5833638 5833773 -176581469 + L1MB7 LINE L1 6050 6184 0 341 154 14 42 chr6 5833773 5833855 -176581387 + L1ME LINE L1 5595 5665 -501 189 279 180 8 chr6 5834181 5834303 -176580939 - MER5A DNA MER1_type -3 186 44 2227 201 19 11 chr6 5834440 5834902 -176580340 + MLT1C LTR MaLR 2 467 0 245 211 28 0 chr6 5835655 5835726 -176579516 + CT-rich Low_complexity Low_complexity 1 73 0 244 291 0 0 chr6 5836340 5836395 -176578847 + MIR SINE MIR 7 61 -201 3110 179 91 24 chr6 5836562 5837284 -176577958 + MER21A LTR ERV1 1 771 -160 196 293 83 53 chr6 5837484 5837617 -176577625 - MIR SINE MIR -45 217 81 211 303 40 0 chr6 5838350 5838426 -176576816 - MIR3 SINE MIR -6 202 124 275 258 0 16 chr6 5839016 5839078 -176576164 + MIR SINE MIR 89 149 -113 391 118 24 24 chr6 5839080 5839165 -176576077 - LTR67 LTR ERVL -2 555 471 2668 174 41 6 chr6 5839166 5839700 -176575542 + L1MB5 LINE L1 5572 6124 -50 985 233 41 23 chr6 5840717 5841060 -176574182 - L1MC4 LINE L1 -5 8037 7689 436 205 103 0 chr6 5841060 5841168 -176574074 - L1 LINE L1 -3294 2852 2736 256 326 31 0 chr6 5841217 5841315 -176573927 - L1ME LINE L1 -5625 445 345 345 82 0 0 chr6 5842112 5842161 -176573081 + (CA)n Simple_repeat Simple_repeat 2 50 0 634 197 61 3 chr6 5842578 5842763 -176572479 - MLT1B LTR MaLR 0 390 217 3542 86 2 4 chr6 5842763 5843240 -176572002 - L1PA13 LINE L1 -2 6161 5686 634 197 61 3 chr6 5843240 5843364 -176571878 - MLT1B LTR MaLR -173 217 1 1458 144 164 12 chr6 5843685 5843941 -176571301 + AluY SINE Alu 1 295 -16 5315 146 37 39 chr6 5844072 5844256 -176570986 - L1MA9 LINE L1 0 6312 6129 2512 85 0 0 chr6 5844256 5844562 -176570680 - AluY SINE Alu -5 306 1 5315 146 37 39 chr6 5844562 5845647 -176569595 - L1MA9 LINE L1 -183 6129 5043 251 146 21 0 chr6 5845645 5845693 -176569549 + L1MA9 LINE L1 4989 5037 -1109 * 826 305 71 24 chr6 5845696 5846116 -176569126 + L2 LINE L2 1033 1472 -1842 1986 122 4 4 chr6 5846675 5846953 -176568289 + AluY SINE Alu 1 278 -33 200 35 35 0 chr6 5846953 5846982 -176568260 + (CAAA)n Simple_repeat Simple_repeat 1 30 0 694 272 111 48 chr6 5847195 5847910 -176567332 - L2 LINE L2 -6 3307 2544 558 230 115 48 chr6 5848029 5848238 -176567004 - MER31B LTR ERV1 0 466 244 249 268 28 0 chr6 5848247 5848318 -176566924 - MER31B LTR ERV1 -382 84 12 2843 65 3 3 chr6 5848319 5848673 -176566569 - THE1A LTR MaLR -1 354 1 12311 82 4 1 chr6 5848673 5850248 -176564994 - THE1A-int LTR MaLR 0 1580 1 2789 80 11 0 chr6 5850248 5850599 -176564643 - THE1A LTR MaLR 0 355 1 403 247 123 31 chr6 5850620 5850782 -176564460 - L2 LINE L2 -940 2374 2198 2346 159 7 27 chr6 5850874 5851277 -176563965 + MSTD LTR MaLR 2 396 0 747 219 47 47 chr6 5851504 5851736 -176563506 - MLT1A2 LTR MaLR 0 365 134 283 95 24 0 chr6 5851736 5851778 -176563464 - MLT1A1 LTR MaLR 0 457 415 1333 99 0 0 chr6 5851779 5851971 -176563271 + L1MA2 LINE L1 6113 6304 0 1038 183 46 118 chr6 5851992 5852358 -176562884 - MLT1A1 LTR MaLR -25 340 1 2587 209 32 9 chr6 5852367 5852894 -176562348 - MLT1A1-int LTR MaLR -1 1734 1196 1181 197 13 26 chr6 5852896 5853130 -176562112 - MLT2B3 LTR ERVL -237 317 87 387 188 0 0 chr6 5853207 5853276 -176561966 - MLT2B3 LTR ERVL -484 70 2 765 128 78 35 chr6 5853279 5853420 -176561822 - MLT1A2 LTR MaLR -227 147 1 2237 122 0 0 chr6 5853565 5853869 -176561373 - AluSx SINE Alu -8 304 1 978 185 0 0 chr6 5853929 5854091 -176561151 - FAM SINE Alu -13 162 1 420 71 0 0 chr6 5854566 5854622 -176560620 + (TG)n Simple_repeat Simple_repeat 1 56 0 1886 77 0 0 chr6 5854622 5854844 -176560398 - AluSq SINE Alu -91 222 1 466 277 69 23 chr6 5854900 5855151 -176560091 - L1ME LINE L1 -317 5804 5584 234 0 0 0 chr6 5856746 5856772 -176558470 + (TC)n Simple_repeat Simple_repeat 1 26 0 366 340 39 0 chr6 5857946 5858149 -176557093 + L1ME3A LINE L1 5727 5937 -233 1552 194 154 19 chr6 5858168 5858215 -176557027 + MSTA LTR MaLR 1 40 -388 2301 130 13 24 chr6 5858215 5858593 -176556649 + THE1C LTR MaLR 1 374 -1 1552 194 154 19 chr6 5858593 5858922 -176556320 + MSTA LTR MaLR 40 428 0 9868 160 25 2 chr6 5858922 5860535 -176554707 + THE1C-int LTR MaLR 1 1650 -1 1913 170 154 0 chr6 5860542 5860913 -176554329 + MSTA LTR MaLR 1 428 0 315 263 0 40 chr6 5861085 5861184 -176554058 + L1MC5 LINE L1 7847 7941 -20 266 232 21 0 chr6 5862035 5862130 -176553112 + CT-rich Low_complexity Low_complexity 1 97 0 786 75 0 0 chr6 5862330 5862436 -176552806 + (GGAA)n Simple_repeat Simple_repeat 2 107 0 1044 216 73 85 chr6 5863320 5863699 -176551543 + MLT2D LTR ERVL 1 376 -38 225 0 0 0 chr6 5863699 5863724 -176551518 + (CA)n Simple_repeat Simple_repeat 2 26 0 1044 216 73 85 chr6 5863724 5863755 -176551487 + MLT2D LTR ERVL 376 406 -8 314 232 77 97 chr6 5863922 5864129 -176551113 - L2 LINE L2 -217 3055 2853 1914 201 40 25 chr6 5864376 5864902 -176550340 + MER74A LTR ERVL 1 534 -24 13421 115 37 16 chr6 5865248 5867403 -176547839 - Tigger1 DNA MER2_type -219 2199 1 4194 145 26 0 chr6 5871468 5872157 -176543085 - L1MC1 LINE L1 -5 6328 5622 522 266 40 40 chr6 5872184 5872357 -176542885 + MER5B DNA MER1_type 4 176 -2 326 222 16 0 chr6 5872506 5872569 -176542673 + L1MCa LINE L1 2005 2068 -4358 366 23 0 0 chr6 5872586 5872629 -176542613 + (GA)n Simple_repeat Simple_repeat 2 44 0 1743 133 0 72 chr6 5872629 5872776 -176542466 - AluJo SINE Alu -40 272 155 2055 107 0 38 chr6 5872776 5873066 -176542176 - AluSg SINE Alu -12 298 20 1743 133 0 72 chr6 5873066 5873211 -176542031 - AluJo SINE Alu -157 155 1 2223 89 0 3 chr6 5873636 5873918 -176541324 - AluSg SINE Alu -16 294 14 273 311 10 10 chr6 5874242 5874345 -176540897 + C-rich Low_complexity Low_complexity 1 103 0 4641 177 17 6 chr6 5875384 5876270 -176538972 + L1MB3 LINE L1 5273 6168 -15 2257 99 3 0 chr6 5877884 5878177 -176537065 - AluSq SINE Alu -19 294 1 257 0 30 0 chr6 5878346 5878379 -176536863 + (TTTA)n Simple_repeat Simple_repeat 2 35 0 4749 138 87 11 chr6 5878393 5878425 -176536817 + L1MA7 LINE L1 5282 5310 -981 2285 137 8 27 chr6 5878425 5878714 -176536528 + MER47A DNA MER2_type 1 283 -2040 2104 149 0 0 chr6 5878714 5879023 -176536219 - AluJb SINE Alu -3 309 1 2285 137 8 27 chr6 5879023 5879106 -176536136 + MER47A DNA MER2_type 283 366 0 4749 138 87 11 chr6 5879106 5880007 -176535235 + L1MA7 LINE L1 5310 6286 -5 411 260 31 8 chr6 5882166 5882293 -176532949 - MIR SINE MIR -109 153 24 293 238 60 46 chr6 5882469 5882620 -176532622 + Charlie7 DNA MER1_type 2444 2596 -16 318 239 12 153 chr6 5883233 5883396 -176531846 + MIR SINE MIR 117 256 -6 255 200 212 12 chr6 5883405 5883490 -176531752 + MIR SINE MIR 65 166 -96 317 95 0 0 chr6 5883493 5883535 -176531707 - 5S rRNA rRNA -79 42 1 564 332 45 7 chr6 5883607 5883842 -176531400 + MIR SINE MIR 17 259 -3 558 282 37 31 chr6 5883867 5884007 -176531235 - MIR SINE MIR -39 223 80 2034 133 41 0 chr6 5884007 5884301 -176530941 + AluSx SINE Alu 1 306 -6 558 282 37 31 chr6 5884301 5884323 -176530919 - MIR SINE MIR -182 80 60 1794 175 3 19 chr6 5885149 5885457 -176529785 + AluJb SINE Alu 2 304 -8 788 144 6 18 chr6 5885457 5885624 -176529618 + GA-rich Low_complexity Low_complexity 1 165 0 228 306 113 16 chr6 5885706 5885830 -176529412 + MIR SINE MIR 73 208 -54 269 189 11 111 chr6 5886107 5886197 -176529045 + MIR SINE MIR 82 162 -100 258 188 34 26 chr6 5886285 5886402 -176528840 + (TAA)n Simple_repeat Simple_repeat 1 118 0 6992 61 12 45 chr6 5887899 5888880 -176526362 - SVA Other Other -5 1381 433 5885 67 27 12 chr6 5888893 5889712 -176525530 - SVA Other Other -555 831 1 403 268 36 7 chr6 5889719 5889857 -176525385 - L1ME LINE L1 -538 5583 5442 2139 88 4 0 chr6 5889982 5890244 -176524998 + AluSq SINE Alu 1 263 -50 191 59 0 29 chr6 5890264 5890298 -176524944 + (CAAAA)n Simple_repeat Simple_repeat 1 33 0 360 185 15 0 chr6 5891081 5891146 -176524096 + MIR SINE MIR 82 147 -61 235 299 21 10 chr6 5891486 5891583 -176523659 - MIR SINE MIR -54 208 111 233 229 9 0 chr6 5892079 5892184 -176523058 + (AGGTG)n Simple_repeat Simple_repeat 5 110 0 211 240 16 0 chr6 5892198 5892323 -176522919 + (AGGTG)n Simple_repeat Simple_repeat 3 129 0 213 243 43 0 chr6 5892345 5892415 -176522827 + (AGGTG)n Simple_repeat Simple_repeat 3 75 0 438 289 64 6 chr6 5893370 5893526 -176521716 + MIR3 SINE MIR 37 201 -7 2824 236 43 24 chr6 5895071 5895876 -176519366 - L1ME3A LINE L1 -76 6094 5274 342 257 184 0 chr6 5896762 5896871 -176518371 - L2 LINE L2 -1 3271 3143 1417 266 51 58 chr6 5897646 5898252 -176516990 - MLT1L LTR MaLR 0 615 14 259 232 253 0 chr6 5898673 5898772 -176516470 + MIR SINE MIR 53 176 -86 257 137 196 0 chr6 5899081 5899132 -176516110 - MLT1J1 LTR MaLR -385 61 1 427 228 117 0 chr6 5899687 5899832 -176515410 + LTR16C LTR ERVL 330 491 0 561 286 30 0 chr6 5900562 5900730 -176514512 + LTR16A LTR ERVL 97 269 -181 349 273 111 0 chr6 5900778 5900877 -176514365 + LTR16A LTR ERVL 341 450 0 391 269 0 0 chr6 5901249 5901357 -176513885 + L2 LINE L2 2503 2610 -704 300 325 63 16 chr6 5901983 5902174 -176513068 + L2 LINE L2 3106 3305 -8 193 312 192 16 chr6 5902753 5902878 -176512364 - MIR3 SINE MIR -29 179 33 204 242 15 15 chr6 5902902 5902968 -176512274 + CT-rich Low_complexity Low_complexity 2 67 0 21 36 0 0 chr6 5904330 5904358 -176510884 + AT_rich Low_complexity Low_complexity 1 28 0 1067 261 92 11 chr6 5904860 5905205 -176510037 + MLT1J LTR MaLR 1 373 -138 2024 144 89 53 chr6 5905205 5905291 -176509951 - MLT2D LTR ERVL -2 518 437 243 0 0 0 chr6 5905291 5905318 -176509924 + (CA)n Simple_repeat Simple_repeat 2 28 0 2024 144 89 53 chr6 5905318 5905623 -176509619 - MLT2D LTR ERVL -83 437 38 1930 163 12 65 chr6 5905623 5905733 -176509509 + MLT1B LTR MaLR 1 115 -275 1897 90 12 102 chr6 5905733 5906065 -176509177 + AluSx SINE Alu 1 302 -10 1930 163 12 65 chr6 5906065 5906366 -176508876 + MLT1B LTR MaLR 115 390 0 2024 144 89 53 chr6 5906366 5906406 -176508836 - MLT2D LTR ERVL -482 38 1 245 326 28 14 chr6 5907602 5907746 -176507496 + MIR SINE MIR 109 254 -8 446 297 50 41 chr6 5908648 5908867 -176506375 - MIR SINE MIR -26 236 16 5046 134 7 67 chr6 5909843 5910790 -176504452 - L1MB3 LINE L1 -9 6174 5284 198 277 62 0 chr6 5910836 5910901 -176504341 - MIR SINE MIR -117 145 77 7664 37 0 0 chr6 5910932 5912188 -176503054 - L1PA5 LINE L1 0 6154 4900 6987 167 36 10 chr6 5912435 5913055 -176502187 + L1MA9 LINE L1 4022 4624 -1688 2149 140 0 0 chr6 5913055 5913355 -176501887 + AluSx SINE Alu 1 300 -12 6987 167 36 10 chr6 5913355 5914898 -176500344 + L1MA9 LINE L1 4624 6312 0 1016 223 55 106 chr6 5914928 5915586 -176499656 + MLT1D LTR MaLR 17 505 0 490 198 9 0 chr6 5915758 5915864 -176499378 - MIR SINE MIR -85 177 71 424 185 12 12 chr6 5916408 5916489 -176498753 + L1MB1 LINE L1 5685 5765 -401 712 148 58 26 chr6 5916489 5916637 -176498605 + L1MB8 LINE L1 6018 6177 -1 1507 182 28 18 chr6 5917397 5917601 -176497641 + MER33 DNA MER1_type 1 201 -2384 2044 119 69 28 chr6 5917601 5917961 -176497281 + THE1C LTR MaLR 1 375 0 1507 182 28 18 chr6 5917961 5918087 -176497155 + MER33 DNA MER1_type 201 324 0 190 339 35 9 chr6 5918470 5918585 -176496657 - L2 LINE L2 -971 2343 2226 618 256 111 14 chr6 5918760 5918967 -176496275 + MLT1G LTR MaLR 61 287 -303 629 262 6 17 chr6 5919001 5919173 -176496069 + MLT1G LTR MaLR 421 590 0 619 319 58 25 chr6 5919660 5919936 -176495306 - L3 LINE CR1 -824 753 469 324 157 0 0 chr6 5920199 5920250 -176494992 + L1MB1 LINE L1 5817 5867 -301 4119 166 43 15 chr6 5920551 5921365 -176493877 + L1MA10 LINE L1 5487 6323 -11 1999 130 0 11 chr6 5921380 5921665 -176493577 - AluSx SINE Alu -22 290 9 213 156 0 22 chr6 5921851 5921896 -176493346 + T-rich Low_complexity Low_complexity 6 49 0 388 276 184 6 chr6 5921970 5922144 -176493098 + MIR SINE MIR 29 233 -29 317 253 0 0 chr6 5923186 5923261 -176491981 - L1ME3A LINE L1 -311 5859 5785 451 239 26 9 chr6 5923275 5923388 -176491854 - L1MA10 LINE L1 -2 6332 6218 639 252 47 51 chr6 5923451 5923705 -176491537 - L1ME3A LINE L1 -393 5777 5525 772 286 118 18 chr6 5923718 5924176 -176491066 - L1ME3A LINE L1 -1692 4454 3951 720 304 101 7 chr6 5924642 5925080 -176490162 - L3 LINE CR1 -2 1575 1097 1855 168 61 82 chr6 5927012 5927306 -176487936 - MLT1C LTR MaLR 0 467 183 2077 120 0 49 chr6 5927306 5927632 -176487610 - AluSg SINE Alu 0 310 1 1855 168 61 82 chr6 5927632 5927778 -176487464 - MLT1C LTR MaLR -284 183 36 224 279 58 0 chr6 5927951 5928037 -176487205 + L3b LINE CR1 1239 1329 -254 279 0 0 0 chr6 5928556 5928587 -176486655 + (CA)n Simple_repeat Simple_repeat 2 32 0 565 329 48 17 chr6 5928883 5929236 -176486006 - LTR16C LTR ERVL 0 491 128 675 100 0 0 chr6 5929489 5929579 -176485663 + FLAM_A SINE Alu 10 99 -43 1025 347 62 24 chr6 5929870 5930545 -176484697 - ERVL LTR ERVL -719 5045 4345 26 0 0 0 chr6 5930561 5930587 -176484655 + AT_rich Low_complexity Low_complexity 1 26 0 2245 303 66 40 chr6 5930593 5932790 -176482452 - ERVL LTR ERVL -1536 4228 1902 684 354 97 8 chr6 5933082 5933455 -176481787 - ERVL LTR ERVL -3531 1465 1060 2413 94 0 0 chr6 5934189 5934496 -176480746 + AluY SINE Alu 1 307 -4 248 234 73 40 chr6 5934755 5934879 -176480363 + L1ME LINE L1 40 167 -5903 322 234 0 13 chr6 5935117 5935194 -176480048 + L2 LINE L2 3229 3304 -9 370 227 62 31 chr6 5935448 5935576 -176479666 + MIR SINE MIR 65 196 -66 227 242 65 0 chr6 5935578 5935640 -176479602 - L2 LINE L2 -1 3312 3247 265 195 230 44 chr6 5935644 5935757 -176479485 - L2 LINE L2 0 3313 3180 1361 171 23 5 chr6 5935807 5936220 -176479022 + MLT2B2 LTR ERVL 1 515 0 570 292 50 7 chr6 5937861 5938138 -176477104 - L1ME4a LINE L1 -1 6120 5832 969 287 96 39 chr6 5938166 5938973 -176476269 + L2 LINE L2 2461 3313 0 375 244 131 40 chr6 5938988 5939164 -176476078 - L1ME4a LINE L1 -334 5787 5596 34041 31 18 10 chr6 5939172 5944939 -176470303 - L1PA2 LINE L1 -2 6153 322 1476 18 0 0 chr6 5944939 5945104 -176470138 - AluYb8 SINE Alu 0 318 154 34041 31 18 10 chr6 5945104 5945426 -176469816 - L1PA2 LINE L1 -5833 322 4 607 284 89 4 chr6 5946039 5946275 -176468967 - MIR SINE MIR -3 259 4 1915 212 129 39 chr6 5946289 5946808 -176468434 - MLT1G LTR MaLR -6 584 19 502 131 0 24 chr6 5946809 5946893 -176468349 - L1MC1 LINE L1 0 6333 6252 2260 94 17 7 chr6 5946921 5947220 -176468022 - AluSc SINE Alu 0 309 8 547 318 31 41 chr6 5948407 5948725 -176466517 + MLT1I LTR MaLR 82 396 -13 1055 261 5 0 chr6 5948725 5948943 -176466299 + MER58A DNA MER1_type 4 222 -2 189 0 0 0 chr6 5949761 5949782 -176465460 + (T)n Simple_repeat Simple_repeat 1 21 0 528 16 0 0 chr6 5950415 5950476 -176464766 + (CA)n Simple_repeat Simple_repeat 2 62 0 216 0 0 0 chr6 5950475 5950499 -176464743 + (GA)n Simple_repeat Simple_repeat 2 25 0 * 429 191 57 77 chr6 5950772 5950955 -176464287 + MER58 DNA MER1_type 43 2419 -1 2058 269 77 70 chr6 5950977 5953131 -176462111 - HERV16 LTR ERVL -2762 2234 1 1336 253 93 23 chr6 5953138 5953534 -176461708 - LTR16A LTR ERVL -10 440 17 253 236 112 22 chr6 5953644 5953733 -176461509 - L1ME4a LINE L1 -17 6104 6008 289 131 51 35 chr6 5954127 5954206 -176461036 + L1PB4 LINE L1 5684 5758 -396 205 228 25 0 chr6 5954216 5954295 -176460947 + (CA)n Simple_repeat Simple_repeat 1 81 0 2154 128 56 11 chr6 5954295 5954653 -176460589 + L1PB4 LINE L1 5783 6156 0 741 251 25 5 chr6 5954740 5954939 -176460303 - L1ME4a LINE L1 -393 5728 5526 2153 118 0 10 chr6 5956155 5956452 -176458790 - AluSq SINE Alu -19 294 1 180 77 0 0 chr6 5956543 5956569 -176458673 + (TATATG)n Simple_repeat Simple_repeat 3 28 0 279 122 0 0 chr6 5956665 5956714 -176458528 + (GA)n Simple_repeat Simple_repeat 2 50 0 589 298 164 3 chr6 5957021 5957350 -176457892 - Tigger8 DNA MER2_type -174 492 111 189 0 0 0 chr6 5957397 5957418 -176457824 + (TG)n Simple_repeat Simple_repeat 2 22 0 1230 202 68 46 chr6 5958726 5959214 -176456028 - MLT1F LTR MaLR 0 567 20 282 184 79 26 chr6 5959424 5959500 -176455742 + LTR50 LTR ERVL 716 795 0 301 298 0 11 chr6 5959576 5959670 -176455572 - MIR SINE MIR -121 141 49 2762 155 33 26 chr6 5960123 5960614 -176454628 + L1PA15 LINE L1 5670 6163 -2 303 348 123 40 chr6 5961050 5961277 -176453965 - MIR SINE MIR -1 261 16 362 300 0 0 chr6 5961728 5961828 -176453414 + MER5A DNA MER1_type 67 166 -23 499 266 65 18 chr6 5961904 5962073 -176453169 + MIR SINE MIR 47 223 -39 21 36 0 0 chr6 5962453 5962481 -176452761 + AT_rich Low_complexity Low_complexity 1 28 0 1049 288 50 52 chr6 5962977 5963394 -176451848 - L2 LINE L2 -66 3247 2832 2284 185 17 77 chr6 5963394 5963928 -176451314 - MLT1D LTR MaLR -1 504 3 1049 288 50 52 chr6 5963928 5964307 -176450935 - L2 LINE L2 -481 2832 2454 245 214 54 0 chr6 5964524 5964580 -176450662 - LTR50 LTR ERVL 0 795 737 319 231 100 23 chr6 5964580 5964710 -176450532 - L1MEc LINE L1 -4544 1852 1713 843 49 0 0 chr6 5964734 5964836 -176450406 - L1PA7 LINE L1 -3 6151 6050 340 261 22 0 chr6 5964838 5964930 -176450312 - L2 LINE L2 -644 2670 2577 33001 108 8 58 chr6 5964962 5971324 -176443918 - L1PA7 LINE L1 -108 6046 12 1041 255 50 61 chr6 5971335 5971557 -176443685 - L1MEc LINE L1 -4678 1718 1495 1639 174 44 7 chr6 5971557 5971855 -176443387 - 7SLRNA srpRNA srpRNA -9 311 3 1041 255 50 61 chr6 5971855 5972174 -176443068 - L1MEc LINE L1 -4901 1495 1183 351 220 28 37 chr6 5972189 5972298 -176442944 + LTR16B LTR ERVL 355 462 -2 1124 304 27 38 chr6 5972332 5972888 -176442354 - L1MEc LINE L1 -5637 759 210 1015 175 0 16 chr6 5973037 5973231 -176442011 + L1MB7 LINE L1 4976 5166 -980 2117 173 41 12 chr6 5973231 5973647 -176441595 + L1MB3 LINE L1 5749 6176 -7 4077 202 45 12 chr6 5973668 5974664 -176440578 + L1MB7 LINE L1 5149 6173 -11 256 222 127 16 chr6 5974703 5974766 -176440476 + L2 LINE L2 3204 3273 -40 21 0 0 0 chr6 5974856 5974877 -176440365 + AT_rich Low_complexity Low_complexity 1 21 0 514 285 80 10 chr6 5975052 5975252 -176439990 + MIR SINE MIR 48 261 -1 320 26 0 0 chr6 5975914 5975953 -176439289 + U5 snRNA snRNA 6 44 -72 184 298 0 0 chr6 5976626 5976673 -176438569 + MIR SINE MIR 215 261 -1 423 202 0 0 chr6 5976677 5976771 -176438471 + (CCA)n Simple_repeat Simple_repeat 1 94 0 381 340 29 40 chr6 5977014 5977377 -176437865 + L3 LINE CR1 430 866 -711 2469 167 55 4 chr6 5977460 5977916 -176437326 + L1MD1 LINE L1 5565 6043 -199 1512 213 66 26 chr6 5977916 5978263 -176436979 - MSTD LTR MaLR 0 396 36 1030 163 41 5 chr6 5978270 5978461 -176436781 + L1MD1 LINE L1 6039 6237 -1 198 0 0 0 chr6 5978461 5978483 -176436759 + (CA)n Simple_repeat Simple_repeat 1 22 0 760 339 42 0 chr6 5978505 5978791 -176436451 + L3 LINE CR1 976 1273 -304 2042 162 34 3 chr6 5979265 5979617 -176435625 - MLT1A1 LTR MaLR 0 365 3 1758 189 0 3 chr6 5980452 5980944 -176434298 - AluJo SINE Alu 0 312 1 502 289 0 7 chr6 5981241 5981376 -176433866 - MER94 DNA DNA 0 134 1 198 231 70 124 chr6 5981864 5982050 -176433192 + L2 LINE L2 3015 3190 -82 184 274 20 0 chr6 5982599 5982650 -176432592 - L2 LINE L2 -5 3267 3216 1323 234 80 27 chr6 5982787 5983291 -176431951 + MLT1E LTR MaLR 102 593 0 703 257 50 94 chr6 5983339 5983701 -176431541 + LTR16A LTR ERVL 105 450 0 201 310 0 14 chr6 5983901 5983972 -176431270 - MIR3 SINE MIR -27 181 112 288 299 0 0 chr6 5984419 5984506 -176430736 - MIR SINE MIR -26 236 150 1903 188 39 39 chr6 5985378 5985793 -176429449 - MLT1D LTR MaLR 0 505 91 862 242 100 64 chr6 5986592 5986952 -176428290 - MLT1J2 LTR MaLR 0 450 78 315 231 34 60 chr6 5988214 5988331 -176426911 + MIR SINE MIR 49 162 -100 797 311 59 11 chr6 5988744 5989200 -176426042 + L2 LINE L2 2034 2511 -803 237 275 165 0 chr6 5989636 5989745 -176425497 + HsTC2 DNA Tc2 1 127 -1771 2754 208 59 0 chr6 5989761 5990352 -176424890 + HsTC2 DNA Tc2 1273 1898 0 181 289 132 18 chr6 5990484 5990598 -176424644 + L2 LINE L2 3187 3313 0 65 74 0 0 chr6 5992061 5992196 -176423046 + AT_rich Low_complexity Low_complexity 1 135 0 438 272 43 19 chr6 5992218 5992380 -176422862 - MIR3 SINE MIR -9 199 34 351 278 75 100 chr6 5992523 5992610 -176422632 - Charlie8 DNA MER1_type -106 235 147 1754 160 3 39 chr6 5992610 5992916 -176422326 - AluJb SINE Alu 0 312 18 351 278 75 100 chr6 5992916 5993069 -176422173 - Charlie8 DNA MER1_type -194 147 1 2089 109 0 7 chr6 5993087 5993433 -176421809 + AluSg SINE Alu 1 344 0 635 246 78 47 chr6 5994160 5994392 -176420850 - Charlie8 DNA MER1_type -2177 240 2 318 311 20 27 chr6 5995698 5995846 -176419396 + L2 LINE L2 2343 2489 -825 436 214 127 8 chr6 5995963 5996089 -176419153 - MER103 DNA DNA -7 159 19 210 358 45 11 chr6 5996244 5996423 -176418819 + L2 LINE L2 2601 2785 -529 992 238 135 67 chr6 5996560 5997086 -176418156 + L1MEc LINE L1 1297 1858 -4538 9342 109 8 0 chr6 5997179 5998454 -176416788 - HSMAR1 DNA Mariner 0 1287 3 1731 100 4 21 chr6 5999537 5999778 -176415464 + AluSc SINE Alu 63 299 -10 2300 136 87 0 chr6 6001733 6002124 -176413118 - MSTB1 LTR MaLR 0 432 8 436 344 60 5 chr6 6003666 6003881 -176411361 - Charlie8 DNA MER1_type -2136 281 55 181 320 181 41 chr6 6005212 6005677 -176409565 + L2 LINE L2 2446 2975 -339 284 279 52 19 chr6 6007091 6007245 -176407997 + L1MC4a LINE L1 5768 5926 -1882 264 298 25 19 chr6 6007424 6007582 -176407660 + L1MC4a LINE L1 5768 5926 -1882 2225 116 0 0 chr6 6009449 6009752 -176405490 + AluY SINE Alu 1 303 -8 1199 157 101 28 chr6 6010549 6010797 -176404445 + L1MD3 LINE L1 7730 7995 0 690 110 20 0 chr6 6011854 6011954 -176403288 + AluSg/x SINE Alu 204 305 -5 252 314 137 10 chr6 6012535 6012637 -176402605 + MIR SINE MIR 30 144 -64 255 283 43 0 chr6 6014182 6014274 -176400968 - MIR SINE MIR -13 249 154 442 60 60 0 chr6 6014275 6014342 -176400900 - AluSp/q SINE Alu -12 301 231 258 59 0 0 chr6 6014344 6014378 -176400864 - Alu SINE Alu -268 34 1 273 352 110 0 chr6 6014380 6014525 -176400717 - MIR SINE MIR -100 162 2 386 282 86 56 chr6 6015715 6016052 -176399190 - MLT1I LTR MaLR 0 409 63 213 154 0 0 chr6 6017736 6017775 -176397467 + (TA)n Simple_repeat Simple_repeat 1 39 0 204 208 21 0 chr6 6017878 6017926 -176397316 - L2 LINE L2 0 3313 3265 2389 85 0 16 chr6 6018292 6018608 -176396634 - AluY SINE Alu 0 311 1 282 229 16 41 chr6 6019232 6019360 -176395882 - MIR SINE MIR -18 190 67 2149 115 3 3 chr6 6019361 6019647 -176395595 + AluSx SINE Alu 1 286 -26 326 116 261 0 chr6 6019668 6019737 -176395505 + L1PA14 LINE L1 6075 6161 0 23 33 0 0 chr6 6020297 6020327 -176394915 + AT_rich Low_complexity Low_complexity 1 30 0 390 216 0 0 chr6 6020696 6020780 -176394462 + MIR SINE MIR 61 145 -63 1354 13 0 7 chr6 6021320 6021475 -176393767 + L1PA6 LINE L1 5995 6148 -6 714 189 24 18 chr6 6021594 6021763 -176393479 + MER5B DNA MER1_type 7 176 -2 359 312 35 24 chr6 6022313 6022483 -176392759 - MIR SINE MIR -70 192 21 1242 203 39 123 chr6 6022807 6023294 -176391948 + L1MC5 LINE L1 6692 7122 -839 2347 85 3 10 chr6 6023294 6023599 -176391643 + AluSp SINE Alu 1 303 -10 1242 203 39 123 chr6 6023599 6023707 -176391535 + L1MC5 LINE L1 7122 7237 -724 277 219 55 0 chr6 6023854 6023927 -176391315 + L1MC5 LINE L1 7311 7387 -574 25 0 0 0 chr6 6024179 6024204 -176391038 + AT_rich Low_complexity Low_complexity 1 25 0 457 301 96 0 chr6 6024505 6024734 -176390508 + L2 LINE L2 1452 1702 -1612 667 184 14 35 chr6 6024743 6024884 -176390358 + L1PA16 LINE L1 6027 6164 -2 483 218 29 24 chr6 6025162 6025332 -176389910 + L1 LINE L1 3128 3298 -2848 750 228 13 70 chr6 6027643 6027867 -176387375 + L1 LINE L1 3289 3493 -2653 869 165 0 0 chr6 6027867 6028000 -176387242 + FLAM_A SINE Alu 1 133 0 750 228 13 70 chr6 6028000 6028073 -176387169 + L1 LINE L1 3493 3569 -2577 2844 128 5 25 chr6 6028298 6028370 -176386872 + MER83 LTR ERV1 1 73 -375 2195 100 0 77 chr6 6028370 6028709 -176386533 + AluSq SINE Alu 1 313 0 2844 128 5 25 chr6 6028709 6029075 -176386167 + MER83 LTR ERV1 73 430 -18 274 378 94 55 chr6 6029128 6029403 -176385839 + L2 LINE L2 2985 3270 -2 2123 95 0 7 chr6 6030217 6030544 -176384698 + AluSc SINE Alu 1 325 0 1769 242 122 33 chr6 6030625 6031161 -176384081 - MLT1E2 LTR MaLR 0 626 34 2280 102 10 0 chr6 6031161 6031456 -176383786 + AluSg SINE Alu 1 298 -12 1769 242 122 33 chr6 6031456 6031494 -176383748 - MLT1E2 LTR MaLR -592 34 1 397 228 0 22 chr6 6033113 6033205 -176382037 + FLAM_A SINE Alu 44 133 0 291 242 63 90 chr6 6033353 6033576 -176381666 - HAL1 LINE L1 -1153 1354 1138 1319 175 10 31 chr6 6033609 6033916 -176381326 + MLT1A1 LTR MaLR 1 373 -1 287 303 49 25 chr6 6033920 6034042 -176381200 - LTR16C LTR ERVL -158 333 209 21 36 0 0 chr6 6034131 6034159 -176381083 + AT_rich Low_complexity Low_complexity 1 28 0 556 183 48 48 chr6 6034301 6034427 -176380815 + L1MC4 LINE L1 7599 7724 -318 317 203 0 0 chr6 6035262 6035321 -176379921 - L2 LINE L2 0 3313 3255 1906 158 10 0 chr6 6035527 6035818 -176379424 + AluJo SINE Alu 1 294 -18 1137 194 19 0 chr6 6035911 6036122 -176379120 - MER20 DNA MER1_type -4 215 1 1999 134 7 3 chr6 6036677 6036967 -176378275 + AluSp SINE Alu 1 291 -22 307 281 71 52 chr6 6037265 6037475 -176377767 - L2 LINE L2 -228 3085 2872 508 278 139 4 chr6 6039292 6039522 -176375720 + MIR SINE MIR 2 262 0 493 231 62 36 chr6 6039792 6039990 -176375252 + LTR33A LTR ERVL 26 175 -348 1798 161 3 16 chr6 6040274 6040585 -176374657 + AluJo SINE Alu 1 307 -5 2568 219 15 9 chr6 6040679 6041214 -176374028 - MLT1F LTR MaLR -2 540 3 283 346 43 68 chr6 6041788 6042227 -176373015 - L2 LINE L2 -38 3234 2807 224 254 0 48 chr6 6042667 6042730 -176372512 - MIR SINE MIR -8 254 195 192 125 0 0 chr6 6042951 6042983 -176372259 + (TG)n Simple_repeat Simple_repeat 2 33 0 216 0 0 0 chr6 6044426 6044450 -176370792 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 1590 207 63 67 chr6 6044657 6045164 -176370078 - MLT1D LTR MaLR 0 505 1 610 279 56 23 chr6 6045261 6045476 -176369766 + MIR SINE MIR 39 260 -2 447 336 27 55 chr6 6046169 6046425 -176368817 + L1MC/D LINE L1 5511 5759 -2049 616 207 166 24 chr6 6047153 6047322 -176367920 - MIR SINE MIR -50 212 20 22 0 0 0 chr6 6050246 6050268 -176364974 + GC_rich Low_complexity Low_complexity 1 22 0 23 33 0 0 chr6 6051072 6051102 -176364140 + AT_rich Low_complexity Low_complexity 1 30 0 32 0 0 0 chr6 6051674 6051706 -176363536 + AT_rich Low_complexity Low_complexity 1 32 0 319 289 11 56 chr6 6052685 6052865 -176362377 + CT-rich Low_complexity Low_complexity 5 176 0 186 200 0 0 chr6 6053551 6053586 -176361656 + L2 LINE L2 3150 3184 -88 234 0 0 0 chr6 6053735 6053761 -176361481 + (T)n Simple_repeat Simple_repeat 1 26 0 219 322 0 41 chr6 6055768 6055889 -176359353 + CT-rich Low_complexity Low_complexity 1 116 0 183 194 28 0 chr6 6056075 6056111 -176359131 + L2 LINE L2 3276 3312 -1 189 0 0 0 chr6 6056600 6056621 -176358621 + (GGA)n Simple_repeat Simple_repeat 1 21 0 440 117 13 0 chr6 6059893 6059970 -176355272 + (GA)n Simple_repeat Simple_repeat 2 79 0 288 0 0 0 chr6 6060579 6060611 -176354631 + (CA)n Simple_repeat Simple_repeat 1 32 0 239 238 38 0 chr6 6060613 6060693 -176354549 + (CG)n Simple_repeat Simple_repeat 1 83 0 230 203 0 14 chr6 6060988 6061057 -176354185 + (CA)n Simple_repeat Simple_repeat 2 69 0 25 0 0 0 chr6 6062289 6062314 -176352928 + GC_rich Low_complexity Low_complexity 1 25 0 197 275 0 58 chr6 6062812 6062881 -176352361 + MIR3 SINE MIR 133 197 -11 2026 96 48 0 chr6 6063743 6064035 -176351207 + AluSq SINE Alu 1 306 -7 1192 241 68 51 chr6 6064272 6064682 -176350560 + L1MC4 LINE L1 7624 8040 -2 350 280 206 41 chr6 6064693 6064911 -176350331 + L1M4 LINE L1 4980 5233 -913 378 0 0 0 chr6 6064949 6064991 -176350251 + (CA)n Simple_repeat Simple_repeat 2 43 0 2154 271 101 24 chr6 6065069 6065948 -176349294 - L1MC4 LINE L1 -459 7583 6637 691 292 111 48 chr6 6066227 6066704 -176348538 - L1MEc LINE L1 -3445 3095 2649 1918 158 3 0 chr6 6066704 6067008 -176348234 + AluSx SINE Alu 1 305 -7 691 292 111 48 chr6 6067008 6067562 -176347680 - L1MEc LINE L1 -3891 2649 2025 571 307 112 68 chr6 6067564 6067849 -176347393 - L1MEc LINE L1 -4604 1936 1626 959 164 31 0 chr6 6067849 6068008 -176347234 - FRAM SINE Alu -2 164 1 571 307 112 68 chr6 6068008 6068132 -176347110 - L1MEc LINE L1 -4914 1626 1509 5879 146 28 9 chr6 6068162 6068665 -176346577 - L1MA9 LINE L1 0 6312 5820 285 89 0 0 chr6 6068665 6068710 -176346532 + (CA)n Simple_repeat Simple_repeat 1 45 0 5879 146 28 9 chr6 6068710 6069832 -176345410 - L1MA9 LINE L1 -492 5820 4655 7094 158 92 68 chr6 6070044 6070508 -176344734 - L1MC3 LINE L1 0 7785 7334 1256 190 99 74 chr6 6070508 6070871 -176344371 + MLT1A2 LTR MaLR 1 372 -2 7094 158 92 68 chr6 6070871 6070966 -176344276 - L1MC3 LINE L1 -451 7334 7243 272 250 0 25 chr6 6070966 6071046 -176344196 - MLT1F1 LTR MaLR -442 125 48 7094 158 92 68 chr6 6071046 6072065 -176343177 - L1MC3 LINE L1 -542 7243 6087 1458 162 38 22 chr6 6072189 6072503 -176342739 - MER33 DNA MER1_type 0 324 6 330 26 0 0 chr6 6073329 6073368 -176341874 + (TG)n Simple_repeat Simple_repeat 2 40 0 343 268 33 72 chr6 6073768 6073921 -176341321 + MIR SINE MIR 34 180 -82 2129 173 36 51 chr6 6074826 6075300 -176339942 + MLT1C LTR MaLR 1 467 0 341 100 0 17 chr6 6075906 6075966 -176339276 + (TTCC)n Simple_repeat Simple_repeat 2 60 0 947 87 16 33 chr6 6075968 6076151 -176339091 + (TTTC)n Simple_repeat Simple_repeat 1 180 0 594 75 0 0 chr6 6076156 6076236 -176339006 + (TTCC)n Simple_repeat Simple_repeat 2 81 0 1103 182 82 82 chr6 6076238 6076518 -176338724 - AluJo SINE Alu -32 280 1 1800 164 0 0 chr6 6076544 6076837 -176338405 - AluJb SINE Alu -19 293 1 208 305 0 49 chr6 6076876 6076958 -176338284 + MIR3 SINE MIR 125 202 -6 217 194 21 161 chr6 6077144 6077237 -176338005 + MIR3 SINE MIR 122 201 -7 266 326 62 16 chr6 6077354 6077483 -176337759 - L2 LINE L2 -27 3245 3111 2048 168 89 39 chr6 6077573 6078013 -176337229 - MLT1C LTR MaLR 0 467 6 183 291 35 35 chr6 6078674 6078760 -176336482 - L2 LINE L2 -733 2581 2496 638 224 26 13 chr6 6078969 6079125 -176336117 + Charlie8 DNA MER1_type 102 259 -2158 198 103 0 0 chr6 6080585 6080614 -176334628 + (TTCC)n Simple_repeat Simple_repeat 3 31 0 2826 77 66 16 chr6 6080822 6081249 -176333993 - LTR7 LTR ERV1 -2 448 1 2675 66 45 13 chr6 6081249 6081629 -176333613 - HERVH LTR ERV1 0 7713 7322 1426 115 23 9 chr6 6081627 6081844 -176333398 - HERVH LTR ERV1 -1894 5819 5600 * 4236 153 12 1 chr6 6081845 6082500 -176332742 - HERVH LTR ERV1 -2564 5149 4488 3497 105 10 2 chr6 6082498 6083002 -176332240 - HERVH LTR ERV1 -3714 3999 3492 * 890 143 27 0 chr6 6082992 6083139 -176332103 - HERVH LTR ERV1 -4423 3290 3140 * 17118 101 36 25 chr6 6083109 6086197 -176329045 - HERVH LTR ERV1 -4709 3004 1 2740 89 60 17 chr6 6086199 6086613 -176328629 - LTR7 LTR ERV1 -2 448 17 583 256 0 0 chr6 6087715 6087832 -176327410 - MER94 DNA DNA -2 132 16 773 180 6 0 chr6 6088942 6089109 -176326133 + (CAT)n Simple_repeat Simple_repeat 1 168 0 3461 67 2 7 chr6 6089111 6089561 -176325681 - LTR7 LTR ERV1 -2 448 1 213 94 0 0 chr6 6089562 6089594 -176325648 + (CAT)n Simple_repeat Simple_repeat 3 34 0 629 316 59 30 chr6 6089712 6090016 -176325226 + L3 LINE CR1 1251 1563 -14 1230 146 68 5 chr6 6090094 6090300 -176324942 + MER20 DNA MER1_type 1 219 0 12220 34 0 0 chr6 6090517 6092719 -176322523 - L1PA4 LINE L1 0 6155 3951 566 246 8 0 chr6 6092969 6093099 -176322143 - MER94 DNA DNA 0 134 4 444 279 147 35 chr6 6094297 6094536 -176320706 + MIR SINE MIR 2 255 -7 278 359 92 0 chr6 6094579 6094721 -176320521 + L2 LINE L2 3117 3271 -1 562 176 27 148 chr6 6094924 6095180 -176320062 + LTR16A1 LTR ERVL 1 225 -232 266 295 21 53 chr6 6096004 6096099 -176319143 - MIR3 SINE MIR -17 191 100 583 120 25 96 chr6 6098719 6099623 -176315619 + (TA)n Simple_repeat Simple_repeat 1 840 0 277 301 14 0 chr6 6099646 6099789 -176315453 + (TA)n Simple_repeat Simple_repeat 1 145 0 641 323 155 17 chr6 6099913 6100616 -176314626 - L2 LINE L2 -474 2840 2041 254 301 88 18 chr6 6100618 6100731 -176314511 + L2 LINE L2 3192 3312 -1 189 325 39 13 chr6 6100784 6100861 -176314381 - L2 LINE L2 -1376 1938 1860 2296 84 0 7 chr6 6101259 6101546 -176313696 - AluY SINE Alu -26 285 1 456 263 36 22 chr6 6101710 6101934 -176313308 - L1MC4a LINE L1 -1785 6023 5797 245 315 63 23 chr6 6101985 6102287 -176312955 - L1MC4a LINE L1 -1099 5047 4734 317 280 106 34 chr6 6102308 6102544 -176312698 - L1MC4a LINE L1 -1438 4708 4456 216 0 0 0 chr6 6102544 6102568 -176312674 + (T)n Simple_repeat Simple_repeat 1 24 0 869 251 81 36 chr6 6102725 6103259 -176311983 - L1MC5 LINE L1 -50 7911 7354 233 266 55 37 chr6 6103322 6103431 -176311811 - HAL1b LINE L1 -742 606 496 21 0 0 0 chr6 6103778 6103799 -176311443 + AT_rich Low_complexity Low_complexity 1 21 0 329 269 0 0 chr6 6106768 6106835 -176308407 + MER5A DNA MER1_type 9 75 -114 599 107 0 0 chr6 6106838 6106922 -176308320 + AluS SINE Alu 1 84 -228 182 208 21 0 chr6 6108528 6108576 -176306666 + GA-rich Low_complexity Low_complexity 4 52 0 466 266 31 44 chr6 6109177 6109359 -176305883 + MER5A DNA MER1_type 3 178 0 236 275 0 0 chr6 6112008 6112077 -176303165 - MER113 DNA MER1_type? -118 403 335 234 371 19 0 chr6 6112157 6112262 -176302980 + L2 LINE L2 2903 3009 -263 466 256 80 23 chr6 6112634 6112896 -176302346 - L1MC5 LINE L1 -48 7913 7637 22 56 0 0 chr6 6112896 6112932 -176302310 + AT_rich Low_complexity Low_complexity 1 36 0 5683 96 11 13 chr6 6113010 6113560 -176301682 - L1PB1 LINE L1 0 6151 5602 2271 83 3 23 chr6 6113560 6113861 -176301381 - AluSc SINE Alu -14 295 1 5683 96 11 13 chr6 6113861 6114205 -176301037 - L1PB1 LINE L1 -549 5602 5259 973 267 80 60 chr6 6114370 6114424 -176300818 - L1MEd LINE L1 -4868 1251 1200 2421 87 0 0 chr6 6114424 6114724 -176300518 - AluY SINE Alu -11 300 1 973 267 80 60 chr6 6114724 6115676 -176299566 - L1MEd LINE L1 -4919 1200 323 225 226 97 11 chr6 6115822 6115915 -176299327 - L1MEd LINE L1 -5941 178 78 435 288 161 15 chr6 6115959 6116233 -176299009 + L1MC4a LINE L1 5575 5888 -1920 24 0 0 0 chr6 6116265 6116289 -176298953 + AT_rich Low_complexity Low_complexity 1 24 0 2844 126 11 7 chr6 6116653 6117098 -176298144 - L1PA11 LINE L1 -1 6173 5727 603 59 24 0 chr6 6117889 6117974 -176297268 - L1PA6 LINE L1 -2 6152 6066 17375 93 7 4 chr6 6117974 6120449 -176294793 - HERVK9 LTR ERVK -1810 4106 1625 4235 103 12 21 chr6 6120450 6121117 -176294125 - HERVK9 LTR ERVK -5255 661 1 2975 118 51 8 chr6 6121117 6121607 -176293635 - MER9 LTR ERVK 0 511 1 2839 3 0 16 chr6 6121643 6121959 -176293283 - AluYa5 SINE Alu 0 311 1 21435 125 13 17 chr6 6121959 6122488 -176292754 - L1P LINE L1 -2530 3616 3087 2290 113 0 6 chr6 6122488 6122799 -176292443 - AluY SINE Alu -2 309 1 21435 125 13 17 chr6 6122799 6125888 -176289354 - L1P LINE L1 -3059 3087 11 279 54 0 0 chr6 6126070 6126107 -176289135 + (TCC)n Simple_repeat Simple_repeat 1 37 0 1516 169 66 0 chr6 6126107 6126380 -176288862 - AluY SINE Alu -20 291 1 324 242 78 13 chr6 6126817 6126970 -176288272 + L1ME LINE L1 5508 5670 -451 1442 247 53 40 chr6 6127015 6127545 -176287697 - MER74A LTR ERVL 0 558 22 689 190 27 2 chr6 6127548 6127719 -176287523 - L1MA4 LINE L1 -190 6114 5942 818 159 14 7 chr6 6127815 6127960 -176287282 + MER47A DNA MER2_type 5 150 -216 470 265 67 76 chr6 6127961 6128340 -176286902 + L1MEc LINE L1 2167 2499 -3716 930 294 73 38 chr6 6128370 6129678 -176285564 + L1MEc LINE L1 2714 4068 -2147 8549 145 11 6 chr6 6129694 6132338 -176282904 + L1MA2 LINE L1 3652 6304 0 33 0 0 0 chr6 6132341 6132374 -176282868 + AT_rich Low_complexity Low_complexity 1 33 0 328 343 41 0 chr6 6132536 6132781 -176282461 + L1MEc LINE L1 4864 5118 -1097 227 264 35 11 chr6 6133126 6133213 -176282029 - MLT1K LTR MaLR -15 573 485 675 214 7 89 chr6 6133239 6133459 -176281783 - MIR SINE MIR -35 227 33 234 0 0 0 chr6 6133535 6133561 -176281681 + (CA)n Simple_repeat Simple_repeat 2 27 0 385 335 76 57 chr6 6133708 6134288 -176280954 - L2 LINE L2 -396 2918 2328 644 246 214 23 chr6 6134301 6134688 -176280554 - LTR67 LTR ERVL 0 557 97 1510 164 15 107 chr6 6135677 6136079 -176279163 - MLT1A1 LTR MaLR 0 365 1 1769 215 11 5 chr6 6136878 6137246 -176277996 + MLT1A2 LTR MaLR 1 370 -4 2750 125 28 0 chr6 6138225 6138656 -176276586 + L1PB3 LINE L1 5711 6153 -1 614 233 126 6 chr6 6138788 6138947 -176276295 - MER5A DNA MER1_type 0 189 12 218 261 72 43 chr6 6139017 6139086 -176276156 - L2 LINE L2 0 3272 3202 209 182 45 154 chr6 6140068 6140178 -176275064 - L2 LINE L2 -20 3252 3155 2035 179 16 40 chr6 6140180 6140604 -176274638 + MLT2D LTR ERVL 1 414 0 200 189 0 0 chr6 6141504 6141541 -176273701 + (TG)n Simple_repeat Simple_repeat 2 38 0 202 346 0 0 chr6 6141643 6141695 -176273547 + L2 LINE L2 3215 3266 -6 225 0 0 0 chr6 6141795 6141820 -176273422 + (CA)n Simple_repeat Simple_repeat 2 26 0 246 136 0 0 chr6 6141894 6141938 -176273304 + (GA)n Simple_repeat Simple_repeat 1 44 0 672 195 94 25 chr6 6141996 6142155 -176273087 - MER5B DNA MER1_type -4 174 5 774 159 6 38 chr6 6142157 6142339 -176272903 + MER33 DNA MER1_type 1 166 -100 1357 212 104 51 chr6 6142340 6142793 -176272449 + MLT1D LTR MaLR 1 477 -28 460 191 17 9 chr6 6142792 6142907 -176272335 + MER33 DNA MER1_type 209 324 0 * 4221 179 38 5 chr6 6143519 6144316 -176270926 + MER54A LTR ERVL 75 897 -4 1197 282 153 7 chr6 6145868 6146473 -176268769 + L2 LINE L2 2612 3307 -6 1449 185 46 60 chr6 6147258 6147712 -176267530 - L1ME2 LINE L1 -114 6050 5603 334 130 0 29 chr6 6147712 6147781 -176267461 + (TA)n Simple_repeat Simple_repeat 2 68 0 1243 68 0 0 chr6 6147790 6147952 -176267290 + AluY SINE Alu 150 311 0 253 250 0 0 chr6 6148075 6148159 -176267083 + L1MC4 LINE L1 6620 6703 -1339 4580 243 51 35 chr6 6148200 6149218 -176266024 - L1ME2 LINE L1 -1083 5063 4063 2353 84 3 0 chr6 6149218 6149527 -176265715 - AluY SINE Alu -1 310 1 4580 243 51 35 chr6 6149527 6149664 -176265578 - L1ME2 LINE L1 -2083 4063 3930 2140 111 3 0 chr6 6149664 6149962 -176265280 - AluSp SINE Alu -14 299 1 4580 243 51 35 chr6 6149962 6150658 -176264584 - L1ME2 LINE L1 -2216 3930 3181 5517 139 14 24 chr6 6150685 6152229 -176263013 - L1PA13 LINE L1 0 7601 6065 2046 133 3 0 chr6 6152229 6152522 -176262720 + AluSx SINE Alu 1 294 -18 5517 139 14 24 chr6 6152522 6152650 -176262592 - L1PA13 LINE L1 -1536 6065 5937 12880 199 17 11 chr6 6152666 6152677 -176262565 - L1PA13 LINE L1 -1668 5916 5907 306 0 0 0 chr6 6152677 6152711 -176262531 + (TTA)n Simple_repeat Simple_repeat 3 36 0 13518 28 0 0 chr6 6152711 6155063 -176260179 - L1PA4 LINE L1 -18 6137 3784 12880 199 17 11 chr6 6155063 6157349 -176257893 - L1PA13 LINE L1 -1677 5907 3582 2119 139 0 0 chr6 6157349 6157650 -176257592 - AluSx SINE Alu -11 301 1 12880 199 17 11 chr6 6157650 6158807 -176256435 - L1PA13 LINE L1 -4002 3582 2434 1126 198 0 25 chr6 6158888 6159125 -176256117 - L1PA13 LINE L1 -7350 231 1 6040 145 31 0 chr6 6159243 6160638 -176254604 - L1MA1 LINE L1 0 7721 6275 * 18956 168 38 36 chr6 6160637 6165421 -176249821 - L1MA1 LINE L1 -2691 4874 93 198 0 0 0 chr6 6165421 6165443 -176249799 + (TG)n Simple_repeat Simple_repeat 2 23 0 18956 168 38 36 chr6 6165443 6165523 -176249719 - L1MA1 LINE L1 -7472 93 15 339 125 0 0 chr6 6165566 6165622 -176249620 - MADE1 DNA Mariner -24 56 1 2151 243 46 35 chr6 6165627 6166312 -176248930 - L1MEc LINE L1 -3148 3067 2404 2224 132 0 0 chr6 6166312 6166622 -176248620 - AluSq SINE Alu -3 310 1 2151 243 46 35 chr6 6166622 6166841 -176248401 - L1MEc LINE L1 -3811 2404 2189 697 244 94 23 chr6 6166889 6167188 -176248054 - L1MEc LINE L1 -4356 2040 1721 22572 108 11 10 chr6 6167221 6171710 -176243532 - L1PA7 LINE L1 0 6154 1665 21 36 0 0 chr6 6172037 6172065 -176243177 + AT_rich Low_complexity Low_complexity 1 28 0 2074 116 7 7 chr6 6172156 6172458 -176242784 - AluSc SINE Alu -7 302 1 710 245 116 45 chr6 6172539 6172944 -176242298 - L1MC4 LINE L1 0 8042 7524 2055 174 133 4 chr6 6172965 6173437 -176241805 - L1MA4A LINE L1 -25 6278 5746 738 294 52 55 chr6 6173442 6173806 -176241436 - L1M2 LINE L1 -5874 975 613 251 360 11 0 chr6 6173909 6173998 -176241244 - L1M2 LINE L1 -6072 777 688 1832 188 35 0 chr6 6173998 6174344 -176240898 + MSTB LTR MaLR 1 358 -68 240 161 16 16 chr6 6174393 6174455 -176240787 + MSTB LTR MaLR 365 426 -2 274 136 0 51 chr6 6174457 6174516 -176240726 + MSTB-int LTR MaLR 1 56 -1595 6236 190 50 64 chr6 6174516 6176201 -176239041 + MER52A LTR ERV1 1 1754 -1 7379 172 70 18 chr6 6176203 6177722 -176237520 + MSTB-int LTR MaLR 54 1651 0 1715 184 7 0 chr6 6177722 6178027 -176237215 + MSTB LTR MaLR 1 307 -119 1503 201 14 3 chr6 6178026 6178314 -176236928 + MSTB LTR MaLR 136 426 0 * 1964 253 13 0 chr6 6178427 6178901 -176236341 - L1M2 LINE L1 -6368 481 2 2421 241 71 53 chr6 6178904 6179844 -176235398 - L1MC4a LINE L1 -348 7460 6504 2708 263 138 30 chr6 6180453 6181543 -176233699 - MER69 DNA AcHobo -1316 1210 4 6012 119 28 10 chr6 6182432 6183655 -176231587 - L1MA3 LINE L1 0 6305 5062 736 194 8 0 chr6 6183744 6183873 -176231369 - FLAM_A SINE Alu -3 130 1 289 319 44 55 chr6 6185741 6185923 -176229319 - L3 LINE CR1 -5 1572 1393 1557 269 75 24 chr6 6187271 6187821 -176227421 + MLT1E LTR MaLR 16 593 0 2127 139 0 0 chr6 6187835 6188136 -176227106 - AluSx SINE Alu -11 301 1 839 193 36 107 chr6 6188162 6188499 -176226743 - L1ME3A LINE L1 -101 6069 5757 588 214 53 0 chr6 6188503 6188634 -176226608 - L1ME3A LINE L1 -507 5663 5526 221 301 0 14 chr6 6190475 6190548 -176224694 + L3 LINE CR1 1142 1213 -364 1826 250 43 19 chr6 6190737 6190795 -176224447 - MLT1H1 LTR MaLR -1 554 499 941 149 85 11 chr6 6190795 6190983 -176224259 + L1MA4A LINE L1 6102 6303 0 1826 250 43 19 chr6 6190983 6191464 -176223778 - MLT1H1 LTR MaLR -56 499 2 218 293 0 32 chr6 6192870 6192993 -176222249 + (TGGA)n Simple_repeat Simple_repeat 3 121 0 544 13 53 0 chr6 6193405 6193480 -176221762 + (TCTA)n Simple_repeat Simple_repeat 3 81 0 241 278 41 0 chr6 6193838 6193935 -176221307 - L1MC4 LINE L1 0 8042 7942 14434 28 2 0 chr6 6193945 6196608 -176218634 - L1PA3 LINE L1 -2 6153 3486 336 220 264 0 chr6 6196616 6196707 -176218535 + MER117 DNA MER1_type 41 155 -42 384 258 47 57 chr6 6199636 6199797 -176215445 - MIR3 SINE MIR -66 142 15 3324 83 32 17 chr6 6199856 6200323 -176214919 + L1PB1 LINE L1 5678 6151 0 2862 156 4 28 chr6 6201866 6202373 -176212869 + L1MA6 LINE L1 5801 6295 -5 1860 208 11 19 chr6 6202397 6202772 -176212470 + MLT1A2 LTR MaLR 1 372 -2 743 298 146 22 chr6 6203801 6204170 -176211072 + L3 LINE CR1 1072 1486 -91 203 286 0 0 chr6 6204386 6204428 -176210814 + L2 LINE L2 3255 3296 -17 648 295 16 21 chr6 6204453 6204643 -176210599 + MIR SINE MIR 3 191 -71 301 303 50 0 chr6 6205599 6205698 -176209544 + MIR SINE MIR 41 144 -118 600 102 11 0 chr6 6206355 6206443 -176208799 + L1MA5 LINE L1 6206 6294 -6 244 386 16 16 chr6 6206922 6207049 -176208193 - MIR3 SINE MIR -44 164 38 1095 216 9 5 chr6 6207403 6207621 -176207621 - MER20 DNA MER1_type 0 219 1 280 253 62 88 chr6 6209708 6209902 -176205340 + MER3 DNA MER1_type 21 209 0 * 1066 183 0 11 chr6 6209902 6209937 -176205305 - MER3 DNA MER1_type -164 45 13 808 220 30 0 chr6 6209938 6210106 -176205136 - MIR SINE MIR -68 194 22 441 274 61 76 chr6 6210151 6210414 -176204828 - MIR SINE MIR -3 259 1 242 214 214 0 chr6 6211281 6211379 -176203863 + MIR3 SINE MIR 12 130 -78 2499 75 0 0 chr6 6211906 6212211 -176203031 - AluY SINE Alu -4 307 3 325 306 76 38 chr6 6212507 6212664 -176202578 - MER91A DNA MER1_type -30 166 4 2401 98 0 0 chr6 6213007 6213314 -176201928 + AluSx SINE Alu 1 307 -5 320 117 0 50 chr6 6213330 6213416 -176201826 - Alu SINE Alu 0 301 234 494 198 48 32 chr6 6213516 6213642 -176201600 + Tigger3(Golem) DNA MER2_type 2840 2967 -62 920 198 25 13 chr6 6214011 6214249 -176200993 + Charlie5 DNA MER1_type 2341 2581 -31 2203 103 13 3 chr6 6214509 6214810 -176200432 - AluSg SINE Alu -6 304 1 234 0 0 0 chr6 6215066 6215092 -176200150 + (TGAA)n Simple_repeat Simple_repeat 1 26 0 239 0 0 31 chr6 6215182 6215214 -176200028 + (TG)n Simple_repeat Simple_repeat 2 32 0 2363 147 56 19 chr6 6215214 6215628 -176199614 - MSTB1 LTR MaLR -3 429 1 329 267 82 52 chr6 6217639 6217871 -176197371 + L1MEd LINE L1 2 240 -5879 1870 238 51 11 chr6 6217906 6218564 -176196678 - L1MB5 LINE L1 0 6174 5254 319 308 197 0 chr6 6219432 6219549 -176195693 + MER91C DNA MER1_type 1 140 0 21 57 0 0 chr6 6219775 6219810 -176195432 + AT_rich Low_complexity Low_complexity 1 35 0 2592 155 77 37 chr6 6219840 6220457 -176194785 - MER4B LTR ERV1 0 779 1 711 191 23 8 chr6 6220504 6220635 -176194607 - MER41C LTR ERV1 -421 133 1 375 278 39 13 chr6 6220875 6221045 -176194197 + L1ME LINE L1 34 207 -5863 294 206 8 135 chr6 6221078 6221204 -176194038 + L1MEc LINE L1 20 129 -6267 1600 303 45 5 chr6 6221264 6221826 -176193416 + L1MEc LINE L1 136 719 -5677 1422 179 64 87 chr6 6222079 6222770 -176192472 + LTR49-int LTR ERV1 1546 2251 -4012 2361 100 0 6 chr6 6222770 6223081 -176192161 + AluSg1 SINE Alu 1 309 0 1422 179 64 87 chr6 6223081 6223121 -176192121 + LTR49-int LTR ERV1 2251 3835 -2428 572 179 90 94 chr6 6223379 6223602 -176191640 + LTR49-int LTR ERV1 3511 3732 -2866 2505 211 80 50 chr6 6223692 6225122 -176190120 + LTR49-int LTR ERV1 2472 5093 -1137 27429 50 5 4 chr6 6225341 6228769 -176186473 + L1P LINE L1 905 4334 -1812 3037 9 3 11 chr6 6228779 6229127 -176186115 - L1HS LINE L1 0 6155 5811 20794 36 2 0 chr6 6229227 6231723 -176183519 + L1P LINE L1 1639 4137 -2009 21 0 0 0 chr6 6231841 6231862 -176183380 + GC_rich Low_complexity Low_complexity 1 21 0 22920 36 1 1 chr6 6231882 6235308 -176179934 + L1PA4 LINE L1 2729 6155 0 327 177 0 0 chr6 6235954 6236016 -176179226 + Alu SINE Alu 240 301 0 208 235 0 0 chr6 6236489 6236540 -176178702 + MIR SINE MIR 211 261 -1 2275 64 30 3 chr6 6236659 6236955 -176178287 - AluY SINE Alu -7 304 1 2235 56 0 0 chr6 6236957 6237227 -176178015 - AluY SINE Alu -8 303 34 915 137 0 0 chr6 6237446 6237570 -176177672 - AluSq/x SINE Alu -189 124 1 270 0 0 0 chr6 6238458 6238488 -176176754 + (TG)n Simple_repeat Simple_repeat 1 30 0 252 0 0 0 chr6 6238487 6238515 -176176727 + (GA)n Simple_repeat Simple_repeat 1 28 0 * 509 346 21 5 chr6 6239642 6239830 -176175412 - MIR SINE MIR -67 195 5 357 340 74 28 chr6 6239762 6239977 -176175265 + MIR SINE MIR 17 241 -21 * 4948 105 42 16 chr6 6240266 6241009 -176174233 - L1PA13 LINE L1 -6 6157 5396 665 84 176 8 chr6 6241009 6241128 -176174114 + L1PA13 LINE L1 5254 5392 -776 2247 95 0 3 chr6 6241135 6241430 -176173812 + L1PA14 LINE L1 5858 6151 -10 189 0 0 0 chr6 6241442 6241463 -176173779 + (GGAA)n Simple_repeat Simple_repeat 3 23 0 413 203 17 34 chr6 6241623 6241800 -176173442 + CT-rich Low_complexity Low_complexity 5 178 0 799 256 39 17 chr6 6243014 6243248 -176171994 + MIR SINE MIR 15 253 -9 835 221 17 43 chr6 6243758 6243989 -176171253 + L1ME3 LINE L1 5937 6161 -1 189 0 0 0 chr6 6244261 6244282 -176170960 + (T)n Simple_repeat Simple_repeat 1 21 0 183 184 0 0 chr6 6244298 6244336 -176170906 + (CA)n Simple_repeat Simple_repeat 1 38 0 683 195 53 35 chr6 6245968 6246137 -176169105 + MER5B DNA MER1_type 6 177 -1 411 263 219 0 chr6 6246234 6246371 -176168871 + MER5A DNA MER1_type 16 182 -7 362 237 13 0 chr6 6246437 6246520 -176168722 - MER81 DNA DNA -30 84 1 1190 167 28 19 chr6 6246524 6246740 -176168502 + MER20 DNA MER1_type 2 219 0 231 267 23 23 chr6 6248206 6248292 -176166950 + MIR SINE MIR 55 140 -68 1351 263 173 6 chr6 6248363 6249086 -176166156 + L2 LINE L2 2461 3312 -1 299 229 64 9 chr6 6249083 6249192 -176166050 - MIR SINE MIR -85 177 63 * 2269 105 0 3 chr6 6249387 6249683 -176165559 - AluSx SINE Alu -17 295 1 2282 91 0 0 chr6 6250338 6250624 -176164618 - AluSx SINE Alu -5 307 22 448 197 0 0 chr6 6250840 6250943 -176164299 - MER5A DNA MER1_type -83 106 4 2320 117 0 0 chr6 6251045 6251353 -176163889 + AluSx SINE Alu 1 308 -4 182 312 56 32 chr6 6251926 6252051 -176163191 - MIR SINE MIR -91 171 44 359 212 34 51 chr6 6252528 6252646 -176162596 - MER103 DNA DNA -47 119 4 442 267 0 0 chr6 6253227 6253343 -176161899 - MIR SINE MIR -10 252 137 325 277 75 0 chr6 6254348 6254442 -176160800 + L2 LINE L2 3178 3278 -35 243 231 0 0 chr6 6255207 6255259 -176159983 - MIR SINE MIR -10 252 201 289 380 72 0 chr6 6255666 6256085 -176159157 - L2 LINE L2 -1230 2084 1636 180 310 79 49 chr6 6257066 6257269 -176157973 + L2 LINE L2 2897 3105 -167 183 313 54 9 chr6 6258044 6258156 -176157086 + L2 LINE L2 2899 3015 -257 547 259 109 85 chr6 6259411 6259828 -176155414 + MLT1L LTR MaLR 110 611 -4 410 306 14 7 chr6 6260149 6260293 -176154949 + MIR SINE MIR 108 252 -10 206 229 0 21 chr6 6260411 6260459 -176154783 - MER5B DNA MER1_type -19 159 113 298 335 96 20 chr6 6261029 6261226 -176154016 - MIR SINE MIR -4 258 47 213 244 58 47 chr6 6261886 6261972 -176153270 + MER5B DNA MER1_type 2 88 -90 180 219 49 0 chr6 6262025 6262066 -176153176 + MIR SINE MIR 72 114 -148 43627 36 22 6 chr6 6262067 6268189 -176147053 - L1PA3 LINE L1 0 6172 1 462 315 89 52 chr6 6268781 6269460 -176145782 - L2 LINE L2 -92 3180 2446 202 205 0 0 chr6 6269735 6269774 -176145468 + (TG)n Simple_repeat Simple_repeat 1 39 0 503 328 51 0 chr6 6271743 6271920 -176143322 + MIR SINE MIR 5 190 -72 2210 123 0 0 chr6 6274335 6274628 -176140614 + AluSc SINE Alu 1 293 -16 251 368 46 33 chr6 6275491 6275643 -176139599 - L2 LINE L2 -1 3271 3118 331 198 74 0 chr6 6275651 6275732 -176139510 + MIR SINE MIR 164 250 -12 487 246 50 40 chr6 6276041 6276145 -176139097 - MIR SINE MIR -5 257 156 2544 46 0 13 chr6 6276145 6276448 -176138794 + AluY SINE Alu 1 299 -12 487 246 50 40 chr6 6276448 6276556 -176138686 - MIR SINE MIR -106 156 50 1758 159 57 0 chr6 6277222 6277505 -176137737 + AluJb SINE Alu 1 299 -13 216 0 0 0 chr6 6278641 6278665 -176136577 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 671 121 30 0 chr6 6278668 6278767 -176136475 - FLAM_C SINE Alu -27 116 15 920 169 31 73 chr6 6278881 6279142 -176136100 - L1MA7 LINE L1 0 6291 6042 272 301 21 11 chr6 6279310 6279403 -176135839 + L2 LINE L2 3175 3268 -4 1263 221 43 24 chr6 6280150 6280721 -176134521 + MLT1E1 LTR MaLR 9 645 -9 192 40 0 0 chr6 6280886 6280911 -176134331 + (TTTA)n Simple_repeat Simple_repeat 2 26 0 205 153 0 85 chr6 6282714 6282773 -176132469 + A-rich Low_complexity Low_complexity 2 55 0 573 188 92 61 chr6 6283568 6283797 -176131445 - MER20B DNA MER1_type 0 783 548 6134 223 57 39 chr6 6283891 6285578 -176129664 + L1M4 LINE L1 14 1936 -1069 4113 190 31 18 chr6 6285746 6286879 -176128363 + L1MB7 LINE L1 4963 6107 -77 1746 147 25 21 chr6 6286880 6287165 -176128077 + AluJb SINE Alu 1 286 -26 23 0 0 0 chr6 6287260 6287283 -176127959 + AT_rich Low_complexity Low_complexity 1 23 0 403 109 16 0 chr6 6287283 6287347 -176127895 - Alu SINE Alu -15 294 230 270 191 63 0 chr6 6287450 6287513 -176127729 + AluJ/FRAM SINE Alu 232 298 -4 225 155 0 184 chr6 6287525 6287596 -176127646 + L1MB7 LINE L1 6095 6177 -7 216 0 0 0 chr6 6287596 6287620 -176127622 + (TA)n Simple_repeat Simple_repeat 2 25 0 1835 84 0 145 chr6 6287620 6287965 -176127277 - AluY SINE Alu -6 295 1 225 155 0 184 chr6 6287965 6287995 -176127247 + L1MB7 LINE L1 6175 6178 -6 2101 131 0 16 chr6 6287996 6288302 -176126940 - AluSx SINE Alu -11 301 1 352 272 243 6 chr6 6288320 6288489 -176126753 + MIR SINE MIR 20 228 -34 43787 33 22 1 chr6 6288936 6294962 -176120280 + L1PA3 LINE L1 1 6154 -1 21 0 0 0 chr6 6294962 6294983 -176120259 + AT_rich Low_complexity Low_complexity 1 21 0 185 368 18 35 chr6 6295218 6295332 -176119910 - L2 LINE L2 -20 3252 3141 235 276 17 0 chr6 6296555 6296613 -176118629 + C-rich Low_complexity Low_complexity 4 62 0 592 294 10 30 chr6 6296699 6296896 -176118346 - MIR SINE MIR -49 213 21 462 238 119 7 chr6 6297234 6297377 -176117865 - MIR SINE MIR -96 166 8 345 75 0 0 chr6 6297812 6297865 -176117377 + (TG)n Simple_repeat Simple_repeat 2 54 0 486 215 189 5 chr6 6298749 6298937 -176116305 + MIR SINE MIR 39 256 -6 21 57 0 0 chr6 6301513 6301548 -176113694 + AT_rich Low_complexity Low_complexity 1 35 0 1834 177 26 10 chr6 6302769 6303074 -176112168 - AluJo SINE Alu -2 310 1 478 257 193 0 chr6 6303551 6303691 -176111551 + MER5A DNA MER1_type 21 187 -2 2073 124 10 0 chr6 6305736 6306026 -176109216 + AluSx SINE Alu 13 305 -7 180 152 0 0 chr6 6306480 6306513 -176108729 + GA-rich Low_complexity Low_complexity 2 34 0 24 0 0 0 chr6 6306670 6306694 -176108548 + AT_rich Low_complexity Low_complexity 1 24 0 308 197 61 0 chr6 6306779 6306845 -176108397 + HAL1b LINE L1 110 179 -1169 10875 194 75 3 chr6 6306859 6311576 -176103666 + L1PBa LINE L1 6 5061 -1801 989 241 126 34 chr6 6311619 6312151 -176103091 + HAL1b LINE L1 547 1127 -221 2908 230 29 27 chr6 6312197 6313585 -176101657 + L1ME1 LINE L1 4776 6161 -5 413 304 95 86 chr6 6314765 6315124 -176100118 + L2 LINE L2 2911 3272 0 2657 227 80 53 chr6 6315228 6315987 -176099255 + L1ME2 LINE L1 4633 5370 -794 189 0 0 0 chr6 6315987 6316008 -176099234 + (TA)n Simple_repeat Simple_repeat 1 21 0 2657 227 80 53 chr6 6316008 6316752 -176098490 + L1ME2 LINE L1 5370 6164 0 204 318 34 23 chr6 6317025 6317113 -176098129 + L2 LINE L2 3224 3312 -1 207 333 129 11 chr6 6317789 6317882 -176097360 + MIR SINE MIR 34 137 -125 433 322 134 0 chr6 6320195 6320344 -176094898 + L2 LINE L2 3104 3272 0 774 161 0 37 chr6 6320362 6320611 -176094631 + (CACCAT)n Simple_repeat Simple_repeat 1 239 0 349 293 47 9 chr6 6320888 6320994 -176094248 + MIR SINE MIR 25 134 -74 314 340 29 0 chr6 6321989 6322092 -176093150 - MIR SINE MIR -64 144 39 217 280 0 0 chr6 6322209 6322259 -176092983 - MIR SINE MIR -111 151 102 612 244 30 30 chr6 6322271 6322439 -176092803 + MER20 DNA MER1_type 13 180 -39 2070 102 47 4 chr6 6322512 6322787 -176092455 - AluSp SINE Alu -26 287 1 236 301 12 48 chr6 6324917 6325000 -176090242 + MIR3 SINE MIR 6 85 -123 339 173 0 27 chr6 6329001 6329076 -176086166 + L1MC5 LINE L1 7135 7207 -754 467 225 52 147 chr6 6329206 6329905 -176085337 + L1MC5 LINE L1 7276 7907 -54 235 269 34 63 chr6 6329941 6330116 -176085126 + L1MC4a LINE L1 4490 4659 -1487 2032 118 56 0 chr6 6330140 6330427 -176084815 + AluSx SINE Alu 1 303 -9 274 248 186 9 chr6 6330533 6330646 -176084596 + MLT1H LTR MaLR 43 175 -374 232 198 78 103 chr6 6330866 6330982 -176084260 + MLT1H LTR MaLR 437 549 0 642 274 94 34 chr6 6331282 6331778 -176083464 + L1MC4a LINE L1 5367 5447 -704 724 206 96 48 chr6 6332525 6332734 -176082508 - MIR SINE MIR -24 238 20 273 260 0 14 chr6 6332753 6332826 -176082416 + L2 LINE L2 3199 3270 -2 27 29 0 0 chr6 6333077 6333111 -176082131 + AT_rich Low_complexity Low_complexity 1 34 0 246 32 0 0 chr6 6335270 6335301 -176079941 + (TTTA)n Simple_repeat Simple_repeat 3 33 0 182 294 69 29 chr6 6335436 6335538 -176079704 + MIR SINE MIR 37 142 -66 195 286 0 18 chr6 6335585 6335641 -176079601 - L2 LINE L2 -5 3267 3213 213 292 0 0 chr6 6336292 6336340 -176078902 + L2 LINE L2 3177 3224 -48 2343 110 0 0 chr6 6338220 6338530 -176076712 - AluSg SINE Alu 0 310 1 477 163 122 0 chr6 6338564 6338662 -176076580 - FLAM_A SINE Alu -13 129 20 701 181 84 0 chr6 6338711 6338866 -176076376 + MER5A DNA MER1_type 1 168 -21 190 125 31 0 chr6 6338840 6338872 -176076370 - MER5B DNA MER1_type -131 47 15 * 330 299 104 44 chr6 6339846 6340164 -176075078 + L2 LINE L2 1274 1610 -1704 * 791 210 30 0 chr6 6340159 6340326 -176074916 + MER5B DNA MER1_type 7 178 0 1362 290 181 29 chr6 6340326 6341251 -176073991 + L2 LINE L2 1609 2673 -641 452 290 246 6 chr6 6341707 6342028 -176073214 + L2 LINE L2 2040 2437 -877 880 158 0 0 chr6 6342242 6342375 -176072867 + AluJo SINE Alu 2 134 -178 365 100 17 0 chr6 6343203 6343263 -176071979 + MADE1 DNA Mariner 3 63 -17 1467 166 93 18 chr6 6343495 6343773 -176071469 - AluJo SINE Alu -13 299 1 540 238 71 8 chr6 6345391 6345517 -176069725 - L2 LINE L2 -1 3312 3179 567 270 54 32 chr6 6345539 6345724 -176069518 - MIR SINE MIR -64 198 10 253 362 21 11 chr6 6345750 6345844 -176069398 + MIR SINE MIR 36 130 -78 2133 126 0 7 chr6 6345949 6346251 -176068991 - AluSq SINE Alu -12 301 2 257 297 126 18 chr6 6346423 6346534 -176068708 + MIR SINE MIR 61 183 -79 604 239 35 78 chr6 6346913 6346960 -176068282 + MER58A DNA MER1_type 5 53 -2367 2254 79 4 0 chr6 6346960 6347273 -176067969 - AluY SINE Alu 0 314 1 604 239 35 78 chr6 6347273 6347454 -176067788 + MER58A DNA MER1_type 53 224 0 300 205 63 87 chr6 6347845 6347972 -176067270 - MIR SINE MIR -67 141 18 3536 143 5 0 chr6 6349857 6350410 -176064832 + MER41D LTR ERV1 2 557 0 387 295 38 0 chr6 6351398 6351503 -176063739 + L2 LINE L2 3200 3308 -5 360 257 121 51 chr6 6352281 6352538 -176062704 - L2 LINE L2 -553 2761 2487 286 219 19 86 chr6 6352561 6352612 -176062630 - L2 LINE L2 -1 3312 3268 2000 128 4 0 chr6 6352612 6352929 -176062313 - AluSx SINE Alu 0 318 1 286 219 19 86 chr6 6352929 6352980 -176062262 - L2 LINE L2 -45 3268 3215 602 240 116 25 chr6 6353389 6353798 -176061444 + LTR33A LTR ERVL 9 498 -25 501 274 8 0 chr6 6353817 6353941 -176061301 - MIR SINE MIR -113 149 25 191 155 121 17 chr6 6353937 6353995 -176061247 + MIR SINE MIR 84 147 -115 * 1026 139 19 48 chr6 6354169 6354378 -176060864 + MER49 LTR ERV1 5 207 -716 2208 4 0 4 chr6 6354383 6354656 -176060586 + AluYa5 SINE Alu 70 341 0 2337 101 0 3 chr6 6355190 6355496 -176059746 + AluSq SINE Alu 9 313 0 343 310 49 27 chr6 6355559 6355791 -176059451 + L1ME LINE L1 5424 5659 -462 261 342 0 0 chr6 6355868 6355944 -176059298 + MIR3 SINE MIR 112 187 -21 213 39 0 0 chr6 6356900 6356926 -176058316 + (TTA)n Simple_repeat Simple_repeat 2 27 0 941 235 42 89 chr6 6357132 6357801 -176057441 + L1ME LINE L1 522 1155 -4925 2073 127 50 14 chr6 6358211 6358573 -176056669 - THE1C LTR MaLR 0 375 1 301 313 70 35 chr6 6359080 6359278 -176055964 + MIR SINE MIR 42 251 -11 1991 135 3 10 chr6 6360251 6360554 -176054688 + AluSx SINE Alu 1 301 -11 246 250 29 29 chr6 6360614 6360718 -176054524 - MLT1L LTR MaLR -36 579 476 337 261 48 106 chr6 6361106 6361154 -176054088 - MIR3 SINE MIR -10 198 149 1963 128 3 23 chr6 6361154 6361459 -176053783 + AluSq SINE Alu 1 299 -14 337 261 48 106 chr6 6361459 6361598 -176053644 - MIR3 SINE MIR -59 149 22 2162 102 0 3 chr6 6362580 6362875 -176052367 - AluSx SINE Alu -18 294 1 21 36 0 0 chr6 6363836 6363864 -176051378 + AT_rich Low_complexity Low_complexity 1 28 0 1166 277 78 23 chr6 6364812 6365289 -176049953 - MLT1J LTR MaLR -2 509 7 2675 164 42 17 chr6 6366587 6367130 -176048112 + MER89 LTR ERV1 3 559 0 350 293 25 51 chr6 6367474 6367631 -176047611 + MER5A DNA MER1_type 1 153 -36 25 0 0 0 chr6 6367963 6367988 -176047254 + AT_rich Low_complexity Low_complexity 1 25 0 207 269 46 65 chr6 6369536 6369644 -176045598 + L2 LINE L2 3198 3303 -10 279 376 48 0 chr6 6369895 6370020 -176045222 + MIR SINE MIR 16 146 -62 599 245 74 106 chr6 6370589 6371153 -176044089 - MLT1G1 LTR MaLR 0 595 6 284 250 0 11 chr6 6371276 6371364 -176043878 + L1MC4 LINE L1 6614 6700 -1342 2091 60 26 0 chr6 6372547 6372812 -176042430 + AluY SINE Alu 1 272 -39 508 256 141 0 chr6 6373130 6373286 -176041956 - MIR SINE MIR -10 252 75 219 69 0 0 chr6 6373347 6373376 -176041866 + (CA)n Simple_repeat Simple_repeat 2 30 0 515 284 0 16 chr6 6374074 6374257 -176040985 + (CA)n Simple_repeat Simple_repeat 1 180 0 822 154 51 0 chr6 6374265 6374421 -176040821 + L1MB2 LINE L1 6005 6168 -3 1656 227 30 59 chr6 6375795 6376372 -176038870 + MER68 LTR ERV1 3 562 0 1801 180 26 10 chr6 6378019 6378324 -176036918 - AluJo SINE Alu -2 310 1 455 264 193 0 chr6 6378801 6378941 -176036301 + MER5A DNA MER1_type 21 187 -2 2050 128 10 0 chr6 6380986 6381275 -176033967 + AluSx SINE Alu 13 304 -8 180 152 0 0 chr6 6381729 6381762 -176033480 + GA-rich Low_complexity Low_complexity 2 34 0 24 0 0 0 chr6 6381919 6381943 -176033299 + AT_rich Low_complexity Low_complexity 1 24 0 308 197 61 0 chr6 6382028 6382094 -176033148 + HAL1b LINE L1 110 179 -1169 10878 194 74 3 chr6 6382108 6386827 -176028415 + L1PBa LINE L1 6 5061 -1801 989 241 126 34 chr6 6386870 6387402 -176027840 + HAL1b LINE L1 547 1127 -221 2930 229 29 27 chr6 6387448 6388836 -176026406 + L1ME1 LINE L1 4776 6161 -5 413 304 95 86 chr6 6390016 6390375 -176024867 + L2 LINE L2 2911 3272 0 2769 232 55 50 chr6 6390479 6392000 -176023242 + L1ME2 LINE L1 4633 6164 0 204 318 34 23 chr6 6392272 6392360 -176022882 + L2 LINE L2 3224 3312 -1 207 333 129 11 chr6 6393036 6393129 -176022113 + MIR SINE MIR 34 137 -125 433 322 134 0 chr6 6395453 6395602 -176019640 + L2 LINE L2 3104 3272 0 774 161 0 37 chr6 6395620 6395869 -176019373 + (CACCAT)n Simple_repeat Simple_repeat 1 239 0 349 293 47 9 chr6 6396146 6396252 -176018990 + MIR SINE MIR 25 134 -74 314 340 29 0 chr6 6397247 6397350 -176017892 - MIR SINE MIR -64 144 39 217 280 0 0 chr6 6397467 6397517 -176017725 - MIR SINE MIR -111 151 102 612 244 30 30 chr6 6397529 6397697 -176017545 + MER20 DNA MER1_type 13 180 -39 2070 102 47 4 chr6 6397770 6398045 -176017197 - AluSp SINE Alu -26 287 1 235 301 12 48 chr6 6400175 6400258 -176014984 + MIR3 SINE MIR 6 85 -123 379 173 0 27 chr6 6404259 6404334 -176010908 + L1MC5 LINE L1 7135 7207 -754 706 217 63 146 chr6 6404464 6405189 -176010053 + L1MC5 LINE L1 7276 7940 -21 299 269 57 57 chr6 6405181 6405374 -176009868 + L1MC4a LINE L1 4467 4659 -1487 * 2022 118 56 0 chr6 6405398 6405685 -176009557 + AluSx SINE Alu 1 303 -9 317 248 186 9 chr6 6405791 6405904 -176009338 + MLT1H LTR MaLR 43 175 -374 277 198 78 103 chr6 6406124 6406240 -176009002 + MLT1H LTR MaLR 437 549 0 238 278 9 37 chr6 6406338 6406446 -176008796 + L1MC4a LINE L1 4878 4982 -1164 827 265 83 54 chr6 6406530 6407036 -176008206 + L1MC4a LINE L1 5358 5479 -672 720 206 96 48 chr6 6407783 6407992 -176007250 - MIR SINE MIR -24 238 20 275 260 0 14 chr6 6408011 6408084 -176007158 + L2 LINE L2 3199 3270 -2 27 29 0 0 chr6 6408335 6408369 -176006873 + AT_rich Low_complexity Low_complexity 1 34 0 246 32 0 0 chr6 6410528 6410559 -176004683 + (TTTA)n Simple_repeat Simple_repeat 3 33 0 194 286 0 18 chr6 6410843 6410899 -176004343 - L2 LINE L2 -5 3267 3213 214 292 0 0 chr6 6411550 6411598 -176003644 + L2 LINE L2 3177 3224 -48 2344 110 0 0 chr6 6413478 6413788 -176001454 - AluSg SINE Alu 0 310 1 534 157 14 71 chr6 6413853 6413993 -176001249 - AluJo SINE Alu -89 223 92 621 165 94 0 chr6 6413995 6414122 -176001120 + MER5A DNA MER1_type 27 165 -24 183 156 31 0 chr6 6414099 6414131 -176001111 - MER5B DNA MER1_type -131 47 15 * 324 299 104 44 chr6 6415105 6415423 -175999819 + L2 LINE L2 1274 1610 -1704 * 793 210 30 0 chr6 6415418 6415585 -175999657 + MER5B DNA MER1_type 7 178 0 1335 293 179 28 chr6 6415585 6416510 -175998732 + L2 LINE L2 1609 2673 -641 416 293 246 6 chr6 6416966 6417287 -175997955 + L2 LINE L2 2040 2437 -877 872 158 0 0 chr6 6417501 6417634 -175997608 + AluJo SINE Alu 2 134 -178 393 100 17 0 chr6 6418462 6418522 -175996720 + MADE1 DNA Mariner 3 63 -17 1493 165 90 18 chr6 6418754 6419033 -175996209 - AluJo SINE Alu -13 299 1 532 238 71 8 chr6 6420651 6420777 -175994465 - L2 LINE L2 -1 3312 3179 554 270 54 32 chr6 6420799 6420984 -175994258 - MIR SINE MIR -64 198 10 245 362 21 11 chr6 6421010 6421104 -175994138 + MIR SINE MIR 36 130 -78 2165 119 0 7 chr6 6421209 6421511 -175993731 - AluSq SINE Alu -12 301 2 256 297 126 18 chr6 6421683 6421794 -175993448 + MIR SINE MIR 61 183 -79 691 239 35 78 chr6 6422173 6422220 -175993022 + MER58A DNA MER1_type 5 53 -2367 2265 79 4 0 chr6 6422220 6422533 -175992709 - AluY SINE Alu 0 314 1 691 239 35 78 chr6 6422533 6422714 -175992528 + MER58A DNA MER1_type 53 224 0 300 205 63 87 chr6 6423105 6423232 -175992010 - MIR SINE MIR -67 141 18 3816 143 5 0 chr6 6425117 6425670 -175989572 + MER41D LTR ERV1 2 557 0 380 295 38 0 chr6 6426658 6426763 -175988479 + L2 LINE L2 3200 3308 -5 379 257 158 46 chr6 6427541 6427825 -175987417 - L2 LINE L2 -553 2761 2446 287 219 19 86 chr6 6427822 6427873 -175987369 - L2 LINE L2 -1 3312 3268 * 2002 128 4 0 chr6 6427873 6428190 -175987052 - AluSx SINE Alu 0 318 1 287 219 19 86 chr6 6428190 6428241 -175987001 - L2 LINE L2 -45 3268 3215 689 240 116 25 chr6 6428650 6429059 -175986183 + LTR33A LTR ERVL 9 498 -25 492 274 8 0 chr6 6429078 6429202 -175986040 - MIR SINE MIR -113 149 25 188 172 121 17 chr6 6429198 6429256 -175985986 + MIR SINE MIR 84 147 -115 * 5399 169 10 24 chr6 6429430 6429644 -175985598 + MER49 LTR ERV1 5 220 -703 2230 4 0 4 chr6 6429644 6429887 -175985355 + AluYa5 SINE Alu 70 311 0 5399 169 10 24 chr6 6429887 6430604 -175984638 + MER49 LTR ERV1 220 923 0 1013 235 169 20 chr6 6430642 6431033 -175984209 - L2 LINE L2 -10 3303 2855 503 224 241 11 chr6 6431274 6431448 -175983794 - L2 LINE L2 -448 2866 2653 440 160 0 0 chr6 6434082 6434157 -175981085 + MLT1E2 LTR MaLR 552 626 0 2412 79 0 3 chr6 6434233 6434538 -175980704 + AluY SINE Alu 1 304 -7 760 259 97 69 chr6 6434652 6434972 -175980270 + L1MC4 LINE L1 6749 7077 -965 381 252 36 9 chr6 6434987 6435098 -175980144 + L1MC4a LINE L1 7161 7274 -534 1627 231 53 17 chr6 6435115 6435530 -175979712 + LTR16A LTR ERVL 16 445 -5 1978 230 68 23 chr6 6435533 6436060 -175979182 + L1MC4 LINE L1 7351 7901 -141 1654 108 0 22 chr6 6437551 6437782 -175977460 + AluSg/x SINE Alu 69 294 -18 3906 153 59 23 chr6 6438154 6438637 -175976605 + MER50 LTR ERV1 1 518 -216 1909 146 42 0 chr6 6438637 6438924 -175976318 + AluSx SINE Alu 1 299 -13 3906 153 59 23 chr6 6438924 6439137 -175976105 + MER50 LTR ERV1 518 722 -12 4821 161 31 43 chr6 6440562 6441504 -175973738 - L1MA7 LINE L1 -39 6252 5323 258 32 0 0 chr6 6441953 6441984 -175973258 + (CA)n Simple_repeat Simple_repeat 2 32 0 458 301 45 0 chr6 6442991 6443147 -175972095 + MER103 DNA DNA 4 166 0 516 341 131 34 chr6 6443791 6444471 -175970771 + L2 LINE L2 1606 2351 -963 388 283 62 14 chr6 6444548 6444693 -175970549 + MIR SINE MIR 41 192 -70 244 332 48 40 chr6 6444801 6445051 -175970191 + L2 LINE L2 2397 2648 -666 717 139 0 0 chr6 6446232 6446354 -175968888 + (GGGA)n Simple_repeat Simple_repeat 3 124 0 383 58 0 0 chr6 6446586 6446638 -175968604 + L1PA15 LINE L1 6101 6152 -13 2754 72 69 8 chr6 6446657 6447034 -175968208 + MLT2A1 LTR ERVL 1 400 -44 281 197 14 0 chr6 6447034 6447105 -175968137 + (CA)n Simple_repeat Simple_repeat 2 73 0 328 148 0 0 chr6 6447105 6447159 -175968083 + MLT2A1 LTR ERVL 400 453 0 36623 33 18 1 chr6 6447265 6453290 -175961952 - L1PA3 LINE L1 0 6155 1 778 266 50 8 chr6 6454349 6454590 -175960652 + LTR16A LTR ERVL 200 450 0 2916 158 62 38 chr6 6454819 6455369 -175959873 - MER7C DNA MER2_type -39 563 1 312 306 60 75 chr6 6455431 6455683 -175959559 - L1M4 LINE L1 -1099 5047 4800 572 291 87 48 chr6 6455850 6455917 -175959325 - L1M4 LINE L1 -1528 4618 4555 1568 96 35 78 chr6 6455917 6456199 -175959043 - L1MA7 LINE L1 -10 6281 6012 572 291 87 48 chr6 6456199 6456928 -175958314 - L1M4 LINE L1 -1591 4555 3791 327 220 140 80 chr6 6456996 6457101 -175958141 + MER103 DNA DNA 2 120 -46 2027 143 7 3 chr6 6457101 6457402 -175957840 + AluSx SINE Alu 1 302 -10 327 220 140 80 chr6 6457402 6457446 -175957796 + MER103 DNA DNA 120 160 -6 192 279 66 142 chr6 6458851 6459034 -175956208 + MIR SINE MIR 74 242 -20 370 308 134 0 chr6 6459519 6459691 -175955551 + MIR SINE MIR 47 241 -21 1129 321 44 90 chr6 6460175 6460550 -175954692 - L3 LINE CR1 -7 1570 1179 2011 116 3 34 chr6 6460550 6460844 -175954398 - AluSx SINE Alu -27 285 1 1129 321 44 90 chr6 6460844 6461125 -175954117 - L3 LINE CR1 -398 1179 971 1742 136 0 39 chr6 6461125 6461405 -175953837 - AluSx SINE Alu -3 309 41 1129 321 44 90 chr6 6461405 6461728 -175953514 - L3 LINE CR1 -606 971 635 548 326 66 48 chr6 6461834 6462318 -175952924 - L2 LINE L2 -173 3099 2600 519 276 79 0 chr6 6462689 6462841 -175952401 + MER103 DNA DNA 1 164 -2 490 264 36 0 chr6 6462889 6462999 -175952243 + MIR SINE MIR 64 177 -85 207 100 0 0 chr6 6463025 6463055 -175952187 + (TTA)n Simple_repeat Simple_repeat 1 30 0 804 221 164 5 chr6 6463068 6463281 -175951961 + MIR SINE MIR 8 254 -8 209 139 42 14 chr6 6464105 6464177 -175951065 + (TA)n Simple_repeat Simple_repeat 2 75 0 335 126 82 0 chr6 6464190 6464349 -175950893 + (TA)n Simple_repeat Simple_repeat 1 172 0 243 163 43 21 chr6 6464438 6464579 -175950663 + (TA)n Simple_repeat Simple_repeat 1 144 0 2276 75 0 29 chr6 6464911 6465217 -175950025 + AluSc SINE Alu 1 297 -12 180 0 0 0 chr6 6465802 6465822 -175949420 + (T)n Simple_repeat Simple_repeat 1 20 0 2361 82 7 0 chr6 6466508 6466801 -175948441 - AluSq SINE Alu -18 295 1 273 301 58 122 chr6 6466967 6467343 -175947899 + L2 LINE L2 2920 3271 -1 585 0 0 0 chr6 6468600 6468665 -175946577 + (TA)n Simple_repeat Simple_repeat 2 66 0 21 0 0 0 chr6 6468802 6468823 -175946419 + AT_rich Low_complexity Low_complexity 1 21 0 358 307 90 2 chr6 6469245 6469473 -175945769 - MIR SINE MIR -6 256 3 422 309 99 0 chr6 6470725 6470890 -175944352 - MIR3 SINE MIR -9 199 13 420 303 55 43 chr6 6471682 6471936 -175943306 - L2 LINE L2 -5 3308 3052 281 294 174 18 chr6 6472125 6472343 -175942899 + MARNA DNA Mariner 271 522 -64 202 275 0 29 chr6 6473351 6473420 -175941822 + C-rich Low_complexity Low_complexity 4 70 0 180 355 109 32 chr6 6473887 6473901 -175941341 + L2 LINE L2 1294 1305 -2009 1880 135 83 0 chr6 6473901 6474189 -175941053 - AluSx SINE Alu 0 312 1 180 355 109 32 chr6 6474189 6474394 -175940848 + L2 LINE L2 1305 1530 -1784 325 251 140 25 chr6 6474568 6474803 -175940439 + L2 LINE L2 1790 2051 -1263 619 351 11 24 chr6 6474817 6475199 -175940043 + L2 LINE L2 2175 2551 -763 281 316 95 30 chr6 6475206 6475374 -175939868 + L2 LINE L2 2654 2832 -482 698 199 33 7 chr6 6476464 6476615 -175938627 - LTR33A LTR ERVL 0 523 369 358 294 66 15 chr6 6476714 6476850 -175938392 - LTR33A LTR ERVL -318 205 63 2679 184 28 54 chr6 6476877 6477452 -175937790 - MER68 LTR ERV1 0 562 3 905 154 51 0 chr6 6478827 6478983 -175936259 - L1MB2 LINE L1 -3 6168 6005 499 290 0 16 chr6 6478991 6479174 -175936068 + (TG)n Simple_repeat Simple_repeat 1 180 0 255 61 0 0 chr6 6479872 6479905 -175935337 + (TG)n Simple_repeat Simple_repeat 2 34 0 492 256 141 0 chr6 6479966 6480122 -175935120 + MIR SINE MIR 75 252 -10 2206 53 23 0 chr6 6480439 6480705 -175934537 - AluY SINE Alu -39 272 1 329 178 0 109 chr6 6481875 6481976 -175933266 - L1MC4 LINE L1 -1339 6703 6614 707 227 99 147 chr6 6482099 6482663 -175932579 + MLT1H1 LTR MaLR 6 555 0 265 365 31 2 chr6 6483232 6483358 -175931884 - MIR SINE MIR -62 146 15 207 269 46 65 chr6 6483608 6483716 -175931526 - L2 LINE L2 -10 3303 3198 28 0 0 0 chr6 6485264 6485292 -175929950 + AT_rich Low_complexity Low_complexity 1 28 0 345 293 25 51 chr6 6485624 6485781 -175929461 - MER5A DNA MER1_type -36 153 1 2932 162 44 18 chr6 6486125 6486668 -175928574 - MER89 LTR ERV1 0 559 3 1333 277 78 23 chr6 6487965 6488442 -175926800 + MLT1J LTR MaLR 7 509 -2 21 36 0 0 chr6 6489390 6489418 -175925824 + AT_rich Low_complexity Low_complexity 1 28 0 2199 99 0 3 chr6 6490377 6490671 -175924571 + AluSx SINE Alu 1 293 -19 302 266 48 106 chr6 6491653 6491792 -175923450 + MIR3 SINE MIR 22 149 -59 1931 130 3 26 chr6 6491792 6492099 -175923143 - AluSq SINE Alu -13 300 1 302 266 48 106 chr6 6492099 6492147 -175923095 + MIR3 SINE MIR 149 198 -10 336 287 146 30 chr6 6492272 6492661 -175922581 + MLT1L LTR MaLR 163 580 -8 2063 128 0 10 chr6 6492699 6493003 -175922239 - AluSx SINE Alu -11 301 1 283 301 46 43 chr6 6494007 6494170 -175921072 - MIR SINE MIR -50 158 42 2248 127 50 14 chr6 6494677 6495039 -175920203 + THE1C LTR MaLR 1 375 0 1173 226 46 91 chr6 6495453 6496118 -175919124 - L1ME LINE L1 -4925 1653 1031 213 39 0 0 chr6 6496324 6496350 -175918892 + (TAA)n Simple_repeat Simple_repeat 2 27 0 257 342 0 0 chr6 6497306 6497382 -175917860 - MIR3 SINE MIR -21 187 112 407 293 77 87 chr6 6497456 6497754 -175917488 - L1ME LINE L1 -459 5662 5367 2333 101 0 3 chr6 6497754 6498060 -175917182 - AluSq SINE Alu 0 313 9 407 293 77 87 chr6 6498060 6498163 -175917079 - L1ME LINE L1 -754 5367 5265 2434 103 0 0 chr6 6498594 6498935 -175916307 - AluSx SINE Alu 0 342 2 387 340 48 50 chr6 6500069 6500489 -175914753 - L1ME LINE L1 -1077 5069 4651 2005 200 100 21 chr6 6501794 6502273 -175912969 + L1MC4 LINE L1 7306 7822 -220 295 333 28 14 chr6 6502279 6502420 -175912822 - MLT1J LTR MaLR -360 151 9 2299 94 0 7 chr6 6503603 6503911 -175911331 + AluSg SINE Alu 1 306 -4 1235 171 34 41 chr6 6504525 6504794 -175910448 - AluJo SINE Alu -45 267 1 2008 141 0 7 chr6 6505054 6505358 -175909884 + AluSx SINE Alu 1 302 -10 274 113 75 30 chr6 6505385 6505518 -175909724 + (CA)n Simple_repeat Simple_repeat 1 139 0 423 0 0 0 chr6 6505741 6505788 -175909454 + (CA)n Simple_repeat Simple_repeat 1 47 0 231 36 0 0 chr6 6506347 6506375 -175908867 + (TATATG)n Simple_repeat Simple_repeat 3 30 0 234 240 60 0 chr6 6506457 6506557 -175908685 + (TA)n Simple_repeat Simple_repeat 2 107 0 493 299 38 53 chr6 6506569 6506834 -175908408 - MIR SINE MIR -5 257 1 297 51 0 0 chr6 6507261 6507300 -175907942 + (TG)n Simple_repeat Simple_repeat 2 40 0 253 170 94 0 chr6 6507898 6507951 -175907291 + MER53 DNA DNA 1 58 -131 572 189 134 0 chr6 6507989 6508116 -175907126 + MER53 DNA DNA 46 189 0 288 331 45 22 chr6 6508989 6509167 -175906075 + MIR SINE MIR 31 212 -50 3171 138 16 6 chr6 6511097 6511603 -175903639 - L1MC3 LINE L1 0 7785 7275 219 259 152 45 chr6 6512075 6512187 -175903055 - MIR SINE MIR -14 248 125 816 303 137 16 chr6 6512696 6513201 -175902041 + L1MC4a LINE L1 5264 5829 -1979 258 330 78 26 chr6 6515602 6515717 -175899525 - L2 LINE L2 -8 3264 3144 1751 73 8 24 chr6 6515940 6516186 -175899056 + MER75B DNA T2_type 1 242 -1 377 177 13 0 chr6 6516409 6516488 -175898754 + (TA)n Simple_repeat Simple_repeat 2 81 0 2098 301 93 31 chr6 6516499 6517683 -175897559 - L2 LINE L2 -167 3146 1896 305 250 0 24 chr6 6517684 6517740 -175897502 + MER94 DNA DNA 4 57 -77 1655 208 33 43 chr6 6517740 6518220 -175897022 - MLT1F LTR MaLR 0 542 5 306 243 14 14 chr6 6518229 6518303 -175896939 + MER94 DNA DNA 61 134 0 280 182 0 0 chr6 6518546 6518590 -175896652 + MLT1K LTR MaLR 434 477 -111 1157 159 67 24 chr6 6520497 6520705 -175894537 - MER20 DNA MER1_type 0 219 3 428 264 50 0 chr6 6520773 6520894 -175894348 - MIR3 SINE MIR -44 164 38 257 59 0 0 chr6 6521020 6521054 -175894188 + MADE1 DNA Mariner 47 80 0 353 143 0 29 chr6 6521107 6521177 -175894065 - MADE1 DNA Mariner -12 68 1 813 73 0 0 chr6 6521681 6521790 -175893452 + (GAAA)n Simple_repeat Simple_repeat 2 110 0 240 111 0 0 chr6 6521794 6521830 -175893412 + (GGGA)n Simple_repeat Simple_repeat 2 37 0 24 32 0 0 chr6 6522253 6522284 -175892958 + AT_rich Low_complexity Low_complexity 1 31 0 266 355 41 86 chr6 6522642 6522910 -175892332 - L2 LINE L2 -92 3180 2925 204 321 0 0 chr6 6523198 6523251 -175891991 - MER5A DNA MER1_type 0 189 137 2742 175 50 2 chr6 6523251 6523747 -175891495 + L1MB3 LINE L1 5662 6181 -2 15382 196 15 5 chr6 6523824 6528272 -175886970 + L1P5 LINE L1 1818 6373 -494 1184 239 68 23 chr6 6528691 6529085 -175886157 - L1ME3A LINE L1 -10 6160 5749 617 264 43 40 chr6 6529085 6529104 -175886138 - L2 LINE L2 -311 3002 2985 2314 92 3 10 chr6 6529104 6529410 -175885832 + AluSq SINE Alu 1 304 -9 617 264 43 40 chr6 6529410 6529650 -175885592 - L2 LINE L2 -328 2985 2744 1746 113 55 24 chr6 6529750 6530041 -175885201 - THE1C LTR MaLR -75 300 1 1810 150 32 0 chr6 6530073 6530353 -175884889 - AluJb SINE Alu -23 289 1 2007 128 3 0 chr6 6530546 6530835 -175884407 - AluSc SINE Alu -19 290 1 1233 311 12 50 chr6 6531803 6532285 -175882957 - L2 LINE L2 0 3272 2809 1054 155 22 43 chr6 6532339 6532571 -175882671 - AluJo SINE Alu 0 312 86 307 242 62 0 chr6 6532622 6532750 -175882492 + AluSp SINE Alu 15 150 -153 949 101 0 0 chr6 6532881 6533000 -175882242 - AluSq/x SINE Alu -193 119 1 632 210 8 0 chr6 6533007 6533131 -175882111 - FLAM_C SINE Alu -10 133 9 2240 105 0 7 chr6 6533146 6533451 -175881791 - AluSx SINE Alu -9 303 1 387 127 0 0 chr6 6533461 6533524 -175881718 + (ATG)n Simple_repeat Simple_repeat 3 65 0 228 242 48 48 chr6 6534112 6534174 -175881068 + L2 LINE L2 3025 3086 -186 2147 110 3 3 chr6 6534536 6534836 -175880406 + AluSx SINE Alu 2 301 -11 202 312 81 11 chr6 6534910 6535096 -175880146 + L2 LINE L2 2545 2743 -571 1637 119 12 0 chr6 6535097 6535341 -175879901 + L1PA16 LINE L1 5792 6038 -128 1316 92 6 6 chr6 6535341 6535515 -175879727 + AluSq SINE Alu 1 174 -139 384 243 29 10 chr6 6585619 6585722 -175829520 + MIR SINE MIR 109 213 -49 240 59 0 0 chr6 6586099 6586133 -175829109 + (TTTA)n Simple_repeat Simple_repeat 2 35 0 249 371 46 7 chr6 6586595 6586746 -175828496 + L3 LINE CR1 631 787 -790 2363 162 22 20 chr6 6586833 6586925 -175828317 - L1M3 LINE L1 -677 5491 5401 2144 113 0 7 chr6 6586925 6587225 -175828017 - AluSx SINE Alu -14 298 1 2363 162 22 20 chr6 6587225 6587724 -175827518 - L1M3 LINE L1 -767 5401 4898 2023 139 0 0 chr6 6588522 6588810 -175826432 - AluSx SINE Alu -24 288 1 1661 273 65 27 chr6 6589052 6589579 -175825663 - MLT1H LTR MaLR 0 549 3 1082 299 25 0 chr6 6589582 6589903 -175825339 - LTR16C LTR ERVL -9 482 154 804 261 55 35 chr6 6590012 6590411 -175824831 - L2 LINE L2 -1366 1948 1542 397 296 148 23 chr6 6590423 6590680 -175824562 + L2 LINE L2 3023 3311 -2 367 252 58 0 chr6 6590942 6591045 -175824197 - L2 LINE L2 -1413 1901 1793 232 248 9 115 chr6 6592213 6592326 -175822916 + MIR SINE MIR 46 146 -62 264 122 0 0 chr6 6592595 6592636 -175822606 + (TTC)n Simple_repeat Simple_repeat 2 42 0 444 284 90 15 chr6 6593205 6593406 -175821836 - L2 LINE L2 -842 2472 2257 1016 142 0 44 chr6 6593406 6593589 -175821653 + FRAM SINE Alu 1 172 -4 353 264 74 50 chr6 6593873 6593994 -175821248 + L2 LINE L2 3190 3313 0 308 174 14 0 chr6 6594057 6594126 -175821116 - L1MC4 LINE L1 -2 8040 7971 2376 77 0 3 chr6 6594149 6594448 -175820794 - AluY SINE Alu -13 298 1 2032 116 0 10 chr6 6594462 6594754 -175820488 - AluSx SINE Alu -23 289 1 1254 220 148 6 chr6 6594767 6594825 -175820417 - L1MC4 LINE L1 -65 7977 7929 275 49 24 0 chr6 6594825 6594866 -175820376 + (CA)n Simple_repeat Simple_repeat 2 43 0 1254 220 148 6 chr6 6594866 6595152 -175820090 - L1MC4 LINE L1 -113 7929 7584 333 0 0 0 chr6 6595164 6595201 -175820041 + (T)n Simple_repeat Simple_repeat 1 37 0 235 296 148 11 chr6 6595997 6596186 -175819056 - L2 LINE L2 -1094 2220 2006 517 271 23 8 chr6 6597530 6597663 -175817579 - MER97c DNA MER1_type? -952 138 4 307 284 0 0 chr6 6598288 6598362 -175816880 + L2 LINE L2 3239 3312 -1 235 315 33 33 chr6 6598579 6598671 -175816571 + MIR3 SINE MIR 86 177 -31 21 0 0 0 chr6 6598976 6598997 -175816245 + AT_rich Low_complexity Low_complexity 1 21 0 2682 152 163 10 chr6 6599029 6599469 -175815773 + MLT2B3 LTR ERVL 2 522 -32 572 40 13 0 chr6 6599469 6599544 -175815698 + (TCTA)n Simple_repeat Simple_repeat 3 78 0 2682 152 163 10 chr6 6599544 6599583 -175815659 + MLT2B3 LTR ERVL 522 554 0 1614 104 22 0 chr6 6599746 6599968 -175815274 - L1PA8 LINE L1 -6 6166 5940 369 364 65 5 chr6 6600154 6600371 -175814871 - MIR SINE MIR -21 241 12 13999 131 18 6 chr6 6600935 6603315 -175811927 + Tigger1 DNA MER2_type 1 2418 0 3934 113 16 0 chr6 6604933 6605484 -175809758 + L1PB1 LINE L1 5584 6143 -8 227 257 14 40 chr6 6607538 6607612 -175807630 + CT-rich Low_complexity Low_complexity 4 75 0 2800 104 0 3 chr6 6607709 6608094 -175807148 + MER41B LTR ERV1 166 549 -86 2164 115 52 30 chr6 6608584 6608950 -175806292 + THE1C LTR MaLR 2 375 0 752 71 0 0 chr6 6610446 6610544 -175804698 + L1MA8 LINE L1 5998 6095 -196 261 286 98 9 chr6 6610934 6611046 -175804196 - MIR SINE MIR -22 240 119 325 321 37 0 chr6 6611192 6611301 -175803941 + L2 LINE L2 3200 3312 -1 1679 155 7 28 chr6 6611714 6612005 -175803237 - AluJb SINE Alu -27 285 1 2412 61 0 0 chr6 6613111 6613405 -175801837 + AluY SINE Alu 1 294 -17 229 343 82 29 chr6 6614012 6614219 -175801023 - L3b LINE CR1 -203 1380 1163 1885 205 130 53 chr6 6614924 6615431 -175799811 + MLT1H LTR MaLR 4 549 0 229 233 50 33 chr6 6615884 6615944 -175799298 + L2 LINE L2 3206 3266 -6 2118 135 3 0 chr6 6617042 6617345 -175797897 + AluSg SINE Alu 3 306 -4 388 262 40 51 chr6 6617380 6617590 -175797652 - MIR SINE MIR -24 238 23 500 297 92 24 chr6 6618111 6618181 -175797061 - MIR SINE MIR -6 256 192 597 45 0 124 chr6 6618181 6618270 -175796972 + MADE1 DNA Mariner 1 78 -2 500 297 92 24 chr6 6618270 6618430 -175796812 - MIR SINE MIR -70 192 15 2285 100 0 0 chr6 6618504 6618805 -175796437 - AluY SINE Alu -10 301 1 19820 29 2 2 chr6 6618957 6621301 -175793941 - L1P LINE L1 -931 5215 2872 380 132 26 13 chr6 6621403 6621479 -175793763 + MLT1D LTR MaLR 429 505 0 1868 191 132 4 chr6 6621479 6621940 -175793302 + L1MB7 LINE L1 5646 6165 -19 6236 64 0 4 chr6 6622062 6622809 -175792433 - L1PA8 LINE L1 -5 6167 5424 1661 84 0 28 chr6 6622809 6623060 -175792182 + L1PA8 LINE L1 5157 5400 -746 183 80 0 0 chr6 6625667 6625692 -175789550 + (CTCTG)n Simple_repeat Simple_repeat 2 26 0 3325 194 24 26 chr6 6625731 6626413 -175788829 + Tigger6a DNA MER2_type 1 680 -403 670 266 108 9 chr6 6626769 6626991 -175788251 - MIR SINE MIR -16 246 3 250 315 225 0 chr6 6627341 6627452 -175787790 - L2 LINE L2 0 3272 3137 320 58 43 14 chr6 6628985 6629054 -175786188 + (TA)n Simple_repeat Simple_repeat 1 71 0 188 333 120 26 chr6 6629999 6630116 -175785126 + L3 LINE CR1 1321 1448 -129 17330 28 2 0 chr6 6630694 6633396 -175781846 - L1PA3 LINE L1 0 6155 3452 1337 246 129 14 chr6 6633461 6633896 -175781346 + L1MC4 LINE L1 7375 7859 -183 2693 50 0 3 chr6 6633999 6634316 -175780926 - L1P2 LINE L1 -358 5796 5480 16072 27 0 0 chr6 6634316 6636862 -175778380 - L1PA3 LINE L1 0 6155 3606 2053 50 0 8 chr6 6637036 6637297 -175777945 - L1PA3 LINE L1 -2524 3622 3364 616 249 77 7 chr6 6637402 6637583 -175777659 - MER63 DNA MER1_type -19 1669 1 1253 263 134 10 chr6 6638377 6638788 -175776454 - LTR16B LTR ERVL 0 464 3 303 49 0 0 chr6 6639879 6639920 -175775322 + (TC)n Simple_repeat Simple_repeat 2 42 0 452 327 13 13 chr6 6640218 6640377 -175774865 - MIR SINE MIR -46 216 58 253 303 98 25 chr6 6640401 6640523 -175774719 - MIR SINE MIR -9 253 123 345 299 21 0 chr6 6642283 6642380 -175772862 + MER81 DNA DNA 1 99 -15 391 158 0 49 chr6 6644233 6644315 -175770927 - L1MC2 LINE L1 -13 6331 6254 718 231 0 0 chr6 6644332 6644497 -175770745 - FRAM SINE Alu 0 182 18 3972 147 143 114 chr6 6644508 6644973 -175770269 - L1MC3 LINE L1 -84 7701 7251 243 261 80 23 chr6 6644973 6645061 -175770181 - MLT1F1 LTR MaLR -440 127 35 3972 147 143 114 chr6 6645061 6645621 -175769621 - L1MC3 LINE L1 -534 7251 6557 21 36 0 0 chr6 6645935 6645963 -175769279 + AT_rich Low_complexity Low_complexity 1 28 0 741 93 19 28 chr6 6645966 6646073 -175769169 - L1MC1 LINE L1 0 6333 6228 17226 157 15 11 chr6 6646073 6648780 -175766462 - ERVL LTR ERVL -2300 3464 748 392 311 36 55 chr6 6648791 6649137 -175766105 + L1ME LINE L1 5385 5741 -421 8138 256 44 34 chr6 6649330 6650481 -175764761 + L1MB4 LINE L1 32 1170 -5212 2307 143 25 25 chr6 6650481 6650845 -175764397 - THE1B LTR MaLR 0 364 1 8138 256 44 34 chr6 6650845 6652714 -175762528 + L1MB4 LINE L1 1170 3018 -3364 23060 38 3 0 chr6 6652714 6656338 -175758904 + L1PA5 LINE L1 2513 6149 -5 8138 256 44 34 chr6 6656338 6657533 -175757709 + L1MB4 LINE L1 3018 4199 -2183 216 0 0 0 chr6 6657533 6657557 -175757685 + (TAAAA)n Simple_repeat Simple_repeat 2 25 0 8138 256 44 34 chr6 6657557 6658518 -175756724 + L1MB4 LINE L1 4199 5403 -979 3172 214 28 14 chr6 6658521 6659337 -175755905 + L1MB4 LINE L1 5588 6415 -1 590 339 85 14 chr6 6659831 6660114 -175755128 + MLT1H1 LTR MaLR 1 303 -252 744 294 162 7 chr6 6660339 6660784 -175754458 - L1MC4a LINE L1 -1919 5889 5376 21 0 0 0 chr6 6660998 6661019 -175754223 + AT_rich Low_complexity Low_complexity 1 21 0 4420 160 9 12 chr6 6661109 6661963 -175753279 - L1PB4 LINE L1 -1 6155 5304 1636 239 16 74 chr6 6662024 6662394 -175752848 - L1ME2 LINE L1 -22 6142 5829 1966 190 130 66 chr6 6662394 6662969 -175752273 - LTR9 LTR ERV1 0 612 1 1636 239 16 74 chr6 6662969 6663284 -175751958 - L1ME2 LINE L1 -335 5829 5497 318 143 76 95 chr6 6663406 6663511 -175751731 - L1MC4a LINE L1 -913 5233 5131 22 0 0 0 chr6 6665563 6665585 -175749657 + AT_rich Low_complexity Low_complexity 1 22 0 3189 248 77 34 chr6 6665722 6666833 -175748409 + L1M4 LINE L1 39 1196 -5346 214 200 0 0 chr6 6666834 6666874 -175748368 + (TA)n Simple_repeat Simple_repeat 2 41 0 241 136 0 0 chr6 6666874 6666918 -175748324 + L1M4 LINE L1 1194 1237 -5305 4284 236 22 17 chr6 6666927 6668200 -175747042 + L1ME4a LINE L1 3867 5145 -1001 480 225 0 0 chr6 6668202 6668331 -175746911 + MLT2B3 LTR ERVL 1 129 -425 2845 26 0 4 chr6 6668331 6668730 -175746512 - L1P LINE L1 -730 5425 5028 6355 22 4 0 chr6 6668730 6669460 -175745782 + L1PA3 LINE L1 5419 6154 -1 1850 204 25 28 chr6 6669462 6669858 -175745384 + MLT2B3 LTR ERVL 122 516 -38 300 119 0 68 chr6 6669876 6669935 -175745307 + MLT2C2 LTR ERVL 407 461 -3 596 146 24 141 chr6 6669938 6670151 -175745091 + L1ME4a LINE L1 5143 5330 -816 1152 164 0 48 chr6 6670159 6670366 -175744876 + AluJo SINE Alu 95 291 -21 701 172 38 19 chr6 6670368 6670525 -175744717 + L1ME4a LINE L1 5323 5482 -702 490 242 160 50 chr6 6670628 6670909 -175744333 + L1ME4a LINE L1 5710 6021 -100 410 255 21 0 chr6 6671136 6671230 -175744012 + MIR3 SINE MIR 63 158 -50 1666 80 43 16 chr6 6671775 6672282 -175742960 - MER4A LTR ERV1 0 664 1 1220 222 102 21 chr6 6672353 6672785 -175742457 - MLT1C LTR MaLR 0 467 1 799 265 86 0 chr6 6672859 6673093 -175742149 - MIR SINE MIR 0 262 9 338 293 45 45 chr6 6673158 6673489 -175741753 + L1ME4a LINE L1 5552 5882 -239 4950 114 23 13 chr6 6674551 6675322 -175739920 + MER4E LTR ERV1 1 779 0 5000 34 0 0 chr6 6675873 6676464 -175738778 - LTR10C LTR ERV1 0 591 1 4152 175 28 49 chr6 6679618 6681096 -175734146 + L1MA9 LINE L1 4721 6176 -136 357 24 0 0 chr6 6681096 6681138 -175734104 + (CA)n Simple_repeat Simple_repeat 1 42 0 4152 175 28 49 chr6 6681138 6681251 -175733991 + L1MA9 LINE L1 6176 6290 -22 245 179 0 18 chr6 6681261 6681317 -175733925 + GA-rich Low_complexity Low_complexity 2 56 0 2081 233 49 60 chr6 6681325 6682324 -175732918 + L1ME3 LINE L1 5172 6157 -5 317 303 57 25 chr6 6682417 6682539 -175732703 + L2 LINE L2 3179 3304 -9 197 360 88 8 chr6 6682712 6682837 -175732405 - MER5A DNA MER1_type 0 189 55 666 265 85 51 chr6 6684623 6684917 -175730325 + L2 LINE L2 3010 3313 0 568 246 0 9 chr6 6685036 6685150 -175730092 + MER81 DNA DNA 1 113 -1 314 297 76 51 chr6 6685236 6685512 -175729730 + LTR33 LTR ERVL 236 518 -3 306 292 153 0 chr6 6685567 6685704 -175729538 + MIR SINE MIR 97 254 -8 207 100 0 0 chr6 6686392 6686422 -175728820 + (CA)n Simple_repeat Simple_repeat 1 30 0 679 169 80 85 chr6 6686569 6686770 -175728472 + MLT1C LTR MaLR 53 252 -215 1207 96 0 0 chr6 6686770 6686937 -175728305 - L1PA13 LINE L1 -485 5678 5512 3090 120 2 0 chr6 6686941 6687408 -175727834 + L1PA13 LINE L1 5694 6161 -2 576 249 124 5 chr6 6687423 6687624 -175727618 + MLT1C LTR MaLR 278 502 -3 336 275 144 6 chr6 6688567 6688734 -175726508 + LTR33 LTR ERVL 1 190 -331 328 288 25 0 chr6 6688822 6688940 -175726302 + LTR33 LTR ERVL 339 459 -62 216 303 67 22 chr6 6689133 6689222 -175726020 + MIR SINE MIR 110 202 -60 779 151 16 0 chr6 6690694 6690820 -175724422 + FRAM SINE Alu 19 146 -30 22 56 0 0 chr6 6690953 6690989 -175724253 + AT_rich Low_complexity Low_complexity 1 36 0 210 182 23 0 chr6 6691048 6691092 -175724150 + T-rich Low_complexity Low_complexity 4 48 0 2148 129 0 13 chr6 6691098 6691407 -175723835 - AluSx SINE Alu -7 305 1 223 245 19 19 chr6 6692277 6692330 -175722912 + L2 LINE L2 3214 3266 -6 655 174 174 6 chr6 6692443 6692604 -175722638 - MER5A DNA MER1_type 0 189 2 25 0 0 0 chr6 6692671 6692696 -175722546 + AT_rich Low_complexity Low_complexity 1 25 0 323 94 0 19 chr6 6696338 6696391 -175718851 + (TTTC)n Simple_repeat Simple_repeat 1 52 0 1172 275 137 33 chr6 6697218 6698183 -175717059 + HAL1 LINE L1 812 1876 -631 236 277 0 42 chr6 6698624 6698743 -175716499 + HAL1b LINE L1 745 858 -490 180 200 0 0 chr6 6698848 6698888 -175716354 + GA-rich Low_complexity Low_complexity 4 43 0 315 257 59 0 chr6 6698951 6699052 -175716190 - LTR67 LTR ERVL -3 554 448 375 316 41 46 chr6 6699332 6699550 -175715692 - LTR67 LTR ERVL -296 261 45 22 0 0 0 chr6 6699829 6699851 -175715391 + AT_rich Low_complexity Low_complexity 1 22 0 490 225 11 0 chr6 6700446 6700535 -175714707 - L2 LINE L2 0 3272 3183 401 240 101 78 chr6 6700561 6700778 -175714464 + MIR SINE MIR 3 224 -38 284 357 35 28 chr6 6700851 6700994 -175714248 - L2 LINE L2 -180 3092 2949 523 296 138 13 chr6 6702243 6702561 -175712681 - L2 LINE L2 -1088 2226 1869 258 221 221 18 chr6 6702619 6702732 -175712510 - MIR SINE MIR -49 213 78 357 269 50 0 chr6 6703586 6703705 -175711537 + L1ME LINE L1 5619 5743 -378 566 75 12 12 chr6 6703705 6703785 -175711457 - MADE1 DNA Mariner 0 80 1 561 325 30 26 chr6 6703860 6704128 -175711114 - L1MC/D LINE L1 -2188 5689 5421 746 124 0 0 chr6 6704156 6704261 -175710981 + AluJb SINE Alu 9 113 -199 889 124 12 0 chr6 6704261 6704422 -175710820 + (GAAA)n Simple_repeat Simple_repeat 1 163 0 329 317 0 0 chr6 6704888 6705030 -175710212 - L1MC/D LINE L1 -1333 4882 4741 307 157 0 0 chr6 6705888 6705939 -175709303 - MLT-int LTR MaLR -1006 729 679 258 279 0 0 chr6 6706001 6706062 -175709180 - MLT1-int LTR MaLR -487 884 824 * 2074 194 37 31 chr6 6706051 6706536 -175708706 - MLT1-int LTR MaLR -660 711 224 1901 212 107 1 chr6 6706549 6707229 -175708013 - L1MEc LINE L1 -3423 2792 2071 40 59 0 0 chr6 6707287 6707355 -175707887 + AT_rich Low_complexity Low_complexity 1 68 0 875 258 65 108 chr6 6707431 6707911 -175707331 - LTR40b LTR ERVL 0 462 4 1087 238 34 3 chr6 6707914 6708251 -175706991 - HERVL40 LTR ERVL 0 5530 2784 270 330 45 17 chr6 6708120 6708296 -175706946 - MER89-int LTR ERV1 -291 6510 6330 * 256 275 78 60 chr6 6708225 6708508 -175706734 - HERVL40 LTR ERVL -256 2781 2740 * 513 263 51 110 chr6 6708675 6709029 -175706213 - HERVL40 LTR ERVL -328 2709 2377 2175 240 79 3 chr6 6709182 6709762 -175705480 - HERVL40 LTR ERVL -874 4656 1844 753 303 5 10 chr6 6709778 6709986 -175705256 - HERVL40 LTR ERVL -2159 3371 3165 2085 139 3 0 chr6 6712075 6712376 -175702866 + AluSq SINE Alu 2 303 -10 192 273 74 33 chr6 6714127 6714248 -175700994 + MER5A DNA MER1_type 43 168 -21 2107 114 29 0 chr6 6714531 6714811 -175700431 + AluSc SINE Alu 1 288 -21 416 332 44 22 chr6 6716608 6716879 -175698363 - L2 LINE L2 -191 3081 2805 2676 70 11 8 chr6 6717001 6717356 -175697886 + L1PA11 LINE L1 5819 6174 0 2371 89 3 3 chr6 6717613 6717916 -175697326 - AluSq SINE Alu -10 303 1 1427 140 91 7 chr6 6718465 6718750 -175696492 + L1MB2 LINE L1 5771 6079 -92 304 249 6 6 chr6 6719041 6719218 -175696024 + (CA)n Simple_repeat Simple_repeat 1 177 0 364 290 50 40 chr6 6719533 6719733 -175695509 - MIR SINE MIR -41 221 20 1741 60 5 0 chr6 6720152 6720367 -175694875 - L1PA5 LINE L1 -164 5990 5775 1049 52 0 15 chr6 6720367 6720501 -175694741 + L1PA5 LINE L1 6021 6154 0 1638 202 0 3 chr6 6721163 6721445 -175693797 + AluJb SINE Alu 1 281 -31 243 0 0 0 chr6 6721450 6721477 -175693765 + (TAAA)n Simple_repeat Simple_repeat 1 27 0 584 245 130 37 chr6 6721889 6722187 -175693055 - LTR16A1 LTR ERVL -2 455 155 253 232 0 0 chr6 6722397 6722453 -175692789 + MIR SINE MIR 129 184 -78 595 283 123 41 chr6 6724172 6725074 -175690168 + L1ME3A LINE L1 4562 5546 -747 386 241 208 70 chr6 6725242 6725612 -175689630 + MLT1H LTR MaLR 129 549 0 585 322 130 25 chr6 6725784 6726107 -175689135 + MLT1L LTR MaLR 215 571 -44 346 386 40 18 chr6 6726174 6726465 -175688777 + L1ME3A LINE L1 5655 5950 -220 594 229 8 0 chr6 6726647 6726769 -175688473 - FLAM_C SINE Alu -19 124 2 1316 214 106 106 chr6 6726772 6727271 -175687971 - MLT1F1 LTR MaLR -43 524 1 288 377 41 0 chr6 6729724 6729870 -175685372 + L3 LINE CR1 890 1041 -536 436 235 182 0 chr6 6730083 6730215 -175685027 + L3 LINE CR1 1049 1204 -373 399 311 82 25 chr6 6730328 6730572 -175684670 + L1ME LINE L1 5405 5662 -459 203 179 0 0 chr6 6730607 6730646 -175684596 + A-rich Low_complexity Low_complexity 1 39 0 447 338 64 0 chr6 6730690 6730909 -175684333 - MIR SINE MIR -7 255 23 219 225 62 25 chr6 6731028 6731108 -175684134 - L3 LINE CR1 -1377 200 118 243 0 0 0 chr6 6731296 6731323 -175683919 + (A)n Simple_repeat Simple_repeat 1 27 0 2042 89 64 11 chr6 6733228 6733375 -175681867 - AluSq SINE Alu -17 296 158 2419 96 0 0 chr6 6733375 6733676 -175681566 - AluSg SINE Alu -9 301 1 2042 89 64 11 chr6 6733676 6733809 -175681433 - AluSq SINE Alu -155 158 1 21 0 0 0 chr6 6733849 6733870 -175681372 + AT_rich Low_complexity Low_complexity 1 21 0 1692 149 7 55 chr6 6734127 6734416 -175680826 + AluJb SINE Alu 3 277 -35 233 268 0 18 chr6 6734419 6734475 -175680767 + GA-rich Low_complexity Low_complexity 4 58 0 312 66 33 33 chr6 6734475 6734536 -175680706 + (GAAA)n Simple_repeat Simple_repeat 4 64 0 290 308 116 27 chr6 6735522 6735668 -175679574 - MIR3 SINE MIR -34 174 16 956 275 116 27 chr6 6735883 6736479 -175678763 + L2 LINE L2 2188 2836 -478 701 276 126 43 chr6 6736482 6737000 -175678242 - L1MEd LINE L1 -1005 5124 4542 668 265 157 13 chr6 6737006 6737383 -175677859 - L1MEd LINE L1 -2196 3933 3503 1240 168 10 14 chr6 6737384 6737593 -175677649 - AluJo SINE Alu -17 295 88 490 286 70 27 chr6 6737598 6738154 -175677088 - L1MEd LINE L1 -2630 3499 2920 315 302 71 8 chr6 6738286 6738412 -175676830 - L1MEd LINE L1 -5394 725 592 4267 136 18 44 chr6 6738858 6739653 -175675589 - L1MC1 LINE L1 0 6333 5560 198 0 0 0 chr6 6740733 6740755 -175674487 + (TTTTTG)n Simple_repeat Simple_repeat 2 23 0 1903 87 77 45 chr6 6740900 6741187 -175674055 - AluSq SINE Alu -17 296 1 1955 83 8 30 chr6 6741597 6741862 -175673380 + AluSg SINE Alu 42 300 -10 1099 109 0 0 chr6 6742442 6742589 -175672653 - AluSq/x SINE Alu -165 148 2 191 375 11 11 chr6 6744759 6744847 -175670395 + L2 LINE L2 1175 1262 -2052 647 249 98 21 chr6 6745101 6745427 -175669815 + HAL1 LINE L1 871 1221 -1286 229 280 0 0 chr6 6745427 6745477 -175669765 - MER45A DNA AcHobo -4 174 125 2131 115 0 3 chr6 6745489 6745775 -175669467 + AluSc SINE Alu 1 285 -24 1095 127 66 71 chr6 6745793 6746005 -175669237 + AluJo SINE Alu 20 230 -82 1184 168 172 27 chr6 6746014 6746276 -175668966 - AluJo SINE Alu -2 300 1 319 140 60 0 chr6 6746337 6746387 -175668855 + AluJo SINE Alu 235 287 -15 294 253 38 0 chr6 6746360 6746439 -175668803 - MER45A DNA AcHobo -35 143 62 * 909 177 100 15 chr6 6746629 6746900 -175668342 + MER33 DNA MER1_type 14 307 -17 357 257 61 20 chr6 6747037 6747185 -175668057 - LTR33A LTR ERVL -14 509 356 230 321 85 0 chr6 6747401 6747507 -175667735 - LTR33A LTR ERVL -350 173 59 703 260 120 53 chr6 6747557 6748123 -175667119 + HAL1 LINE L1 1884 2487 -20 409 273 44 108 chr6 6748620 6748964 -175666278 + MLT1I LTR MaLR 81 402 -7 1259 222 68 31 chr6 6749170 6749522 -175665720 - MLT1A1 LTR MaLR 0 365 1 878 67 0 0 chr6 6749859 6749964 -175665278 + AluY SINE Alu 196 300 -11 2339 103 3 0 chr6 6750242 6750552 -175664690 + AluSx SINE Alu 1 311 -1 1587 97 162 16 chr6 6750554 6750825 -175664417 + AluSx SINE Alu 2 308 0 487 306 44 14 chr6 6752567 6752792 -175662450 + MLT1J LTR MaLR 311 596 -19 233 127 28 70 chr6 6754397 6754468 -175660774 - L1MD2 LINE L1 -3 6356 6289 1802 226 108 26 chr6 6754580 6755155 -175660087 - L1MD2 LINE L1 -59 6300 5679 5484 244 90 15 chr6 6755170 6756886 -175658356 - L1MD2 LINE L1 -743 5403 3541 1748 252 23 50 chr6 6756886 6757461 -175657781 + MER68 LTR ERV1 2 560 -2 5484 244 90 15 chr6 6757461 6757565 -175657677 - L1MD2 LINE L1 -2605 3541 3446 2464 193 69 30 chr6 6757565 6758155 -175657087 - Tigger7 DNA MER2_type 0 2487 1 2826 239 19 35 chr6 6758155 6758368 -175656874 - L1MD2 LINE L1 -2699 3447 3232 1837 93 0 0 chr6 6758368 6758605 -175656637 - AluY SINE Alu 0 311 75 2826 239 19 35 chr6 6758605 6759124 -175656118 - L1MD2 LINE L1 -2914 3232 2706 1874 147 158 13 chr6 6759124 6759498 -175655744 - MSTA LTR MaLR 0 428 1 9511 124 36 39 chr6 6759498 6761081 -175654161 - MSTA-int LTR MaLR 0 1580 3 1966 144 137 13 chr6 6761083 6761464 -175653778 - MSTA LTR MaLR 0 428 1 2826 239 19 35 chr6 6761464 6761659 -175653583 - L1MD2 LINE L1 -3440 2706 2530 245 273 133 62 chr6 6761660 6761788 -175653454 - MIR SINE MIR -106 156 20 26 0 0 0 chr6 6762372 6762398 -175652844 + AT_rich Low_complexity Low_complexity 1 26 0 539 213 269 0 chr6 6763464 6763624 -175651618 + MER3 DNA MER1_type 1 203 -6 492 202 15 3 chr6 6763652 6763789 -175651453 - MER5A DNA MER1_type -14 175 3 1193 266 113 15 chr6 6763930 6764389 -175650853 + MER69 DNA AcHobo 214 717 -1809 1318 151 106 8 chr6 6764411 6764656 -175650586 - L1PA16 LINE L1 -9 6157 5889 1163 191 131 76 chr6 6764672 6765200 -175650042 + MER69 DNA AcHobo 1969 2525 -1 388 248 16 33 chr6 6765222 6765343 -175649899 + L2 LINE L2 3195 3313 0 1897 132 4 0 chr6 6767349 6767621 -175647621 + AluSc SINE Alu 37 309 0 390 42 0 0 chr6 6767621 6767669 -175647573 + (GGAA)n Simple_repeat Simple_repeat 1 48 0 5469 180 41 27 chr6 6768249 6770367 -175644875 - L1MB4 LINE L1 -37 6143 4015 455 310 104 30 chr6 6770486 6770754 -175644488 + L1MEc LINE L1 245 532 -6075 302 235 98 15 chr6 6771166 6771298 -175643944 + L1MEc LINE L1 999 1141 -5466 * 1741 271 102 13 chr6 6771287 6772121 -175643121 + L1MEc LINE L1 950 2077 -4481 1169 251 44 17 chr6 6772327 6772622 -175642620 + LTR40a LTR ERVL 217 519 0 296 299 31 16 chr6 6772626 6772753 -175642489 + L1MEc LINE L1 2076 2204 -4403 310 156 45 58 chr6 6772753 6772907 -175642335 + (TTATA)n Simple_repeat Simple_repeat 3 154 0 904 190 85 63 chr6 6772924 6773240 -175642002 - MER33 DNA MER1_type 0 324 2 402 235 66 7 chr6 6773240 6773376 -175641866 + L1MEc LINE L1 2270 2413 -4194 514 255 85 7 chr6 6773594 6773747 -175641495 + MIR SINE MIR 2 166 -96 468 208 0 0 chr6 6774505 6774611 -175640631 + (TA)n Simple_repeat Simple_repeat 1 106 0 726 243 0 38 chr6 6774863 6775048 -175640194 + AluJo SINE Alu 122 299 -13 320 207 76 27 chr6 6775954 6776072 -175639170 + L1ME4a LINE L1 5752 5874 -247 258 32 0 0 chr6 6776099 6776130 -175639112 + (TG)n Simple_repeat Simple_repeat 2 32 0 248 275 25 0 chr6 6776130 6776210 -175639032 + L1ME4a LINE L1 5973 6054 -67 231 229 16 16 chr6 6776559 6776620 -175638622 + GA-rich Low_complexity Low_complexity 4 64 0 2077 104 104 21 chr6 6777118 6777454 -175637788 - THE1B LTR MaLR 0 364 1 1537 179 23 29 chr6 6777525 6777833 -175637409 + AluJo SINE Alu 5 310 -2 242 297 158 0 chr6 6778736 6778837 -175636405 + MIR SINE MIR 35 151 -111 945 193 60 32 chr6 6778840 6779089 -175636153 - MER46C DNA MER2_type 0 338 83 317 232 0 49 chr6 6779208 6779290 -175635952 + MIR SINE MIR 155 232 -30 25 0 0 0 chr6 6780167 6780192 -175635050 + AT_rich Low_complexity Low_complexity 1 25 0 374 264 116 8 chr6 6780457 6780578 -175634664 + L2 LINE L2 3180 3313 0 3498 116 43 10 chr6 6780967 6781475 -175633767 - MER1A DNA MER1_type 0 527 3 247 67 67 0 chr6 6781940 6781985 -175633257 + CT-rich Low_complexity Low_complexity 4 51 0 2312 115 0 0 chr6 6782245 6782540 -175632702 + AluSx SINE Alu 5 299 -13 790 185 25 0 chr6 6783088 6783250 -175631992 + MER5A DNA MER1_type 1 166 -23 355 250 72 33 chr6 6783129 6783281 -175631961 - MER5A DNA MER1_type -31 158 1 * 1991 156 23 25 chr6 6783442 6783795 -175631447 + MLT1A1 LTR MaLR 13 364 -1 843 181 32 27 chr6 6784207 6784395 -175630847 - MER5A DNA MER1_type 0 189 1 1622 138 98 41 chr6 6786430 6786709 -175628533 - MLT1B LTR MaLR 0 390 89 2250 116 13 0 chr6 6786709 6787012 -175628230 + AluSp SINE Alu 1 307 -6 1622 138 98 41 chr6 6787012 6787049 -175628193 - MLT1B LTR MaLR -301 89 56 583 175 0 10 chr6 6787049 6787146 -175628096 - Tigger7 DNA MER2_type -2 2489 2394 1167 218 75 0 chr6 6787147 6787386 -175627856 - Tigger7 DNA MER2_type -2222 265 9 362 143 18 0 chr6 6787393 6787449 -175627793 - MLT1B LTR MaLR -330 60 4 346 178 11 67 chr6 6788458 6788548 -175626694 - MIR SINE MIR -112 150 66 1520 216 49 6 chr6 6789415 6789762 -175625480 + MLT1A1 LTR MaLR 1 362 -3 1816 186 132 13 chr6 6789906 6790353 -175624889 - MLT1D LTR MaLR 0 505 6 212 204 161 21 chr6 6790358 6790451 -175624791 + MIR SINE MIR 140 245 -17 1346 199 69 22 chr6 6791108 6791425 -175623817 + MER58B DNA MER1_type 10 341 0 235 298 161 0 chr6 6791658 6791782 -175623460 - MIR SINE MIR -70 192 49 293 291 0 25 chr6 6791956 6792035 -175623207 + G-rich Low_complexity Low_complexity 1 77 0 636 192 21 21 chr6 6792039 6792351 -175622891 + GA-rich Low_complexity Low_complexity 1 312 0 181 313 35 56 chr6 6796565 6796709 -175618533 - MIR3 SINE MIR -3 205 65 2166 123 3 3 chr6 6797179 6797489 -175617753 + AluSx SINE Alu 3 312 0 2461 73 7 0 chr6 6798310 6798613 -175616629 + AluY SINE Alu 1 305 -6 736 284 46 17 chr6 6798646 6798885 -175616357 - Charlie8 DNA MER1_type -2171 246 1 1395 258 86 5 chr6 6799379 6799763 -175615479 - LTR16C LTR ERVL -6 485 71 1865 223 6 0 chr6 6799784 6800147 -175615095 - MLT1A1 LTR MaLR 0 365 1 1120 274 94 105 chr6 6800311 6800502 -175614740 + L1MEd LINE L1 42 234 -5885 207 0 0 0 chr6 6800502 6800525 -175614717 + (CA)n Simple_repeat Simple_repeat 2 24 0 1120 274 94 105 chr6 6800525 6801550 -175613692 + L1MEd LINE L1 234 1245 -4874 817 247 63 103 chr6 6802068 6802525 -175612717 - MLT1F LTR MaLR 0 542 104 3793 143 67 45 chr6 6802526 6803842 -175611400 - pTR5 LTR ERV1 0 2438 760 359 222 145 0 chr6 6803842 6803959 -175611283 - MLT1F LTR MaLR -453 140 7 733 180 0 0 chr6 6804071 6804210 -175611032 + L1MB2 LINE L1 6033 6171 0 21 0 0 0 chr6 6804457 6804478 -175610764 + AT_rich Low_complexity Low_complexity 1 21 0 2274 111 16 0 chr6 6804487 6804794 -175610448 + AluSx SINE Alu 1 312 0 721 247 75 45 chr6 6804912 6805179 -175610063 + L1M4 LINE L1 4015 4289 -1857 356 269 61 19 chr6 6805221 6805382 -175609860 - L1MB5 LINE L1 -332 5842 5677 186 238 109 59 chr6 6806656 6806757 -175608485 + MER5C DNA MER1_type 90 195 -129 794 134 34 0 chr6 6806836 6806955 -175608287 - FLAM_C SINE Alu -19 124 2 644 277 107 12 chr6 6806964 6807217 -175608025 + L1MD2 LINE L1 6083 6359 0 441 291 68 0 chr6 6808222 6808370 -175606872 + MIR SINE MIR 105 262 0 239 278 33 33 chr6 6808578 6808668 -175606574 + L2 LINE L2 3203 3292 -21 8872 137 68 41 chr6 6809022 6810674 -175604568 - pTR5 LTR ERV1 0 2438 741 595 207 79 12 chr6 6812017 6812181 -175603061 + MER5B DNA MER1_type 1 175 -3 2101 113 7 0 chr6 6812309 6812609 -175602633 + AluSx SINE Alu 1 302 -10 695 196 0 23 chr6 6812617 6812750 -175602492 + FLAM_C SINE Alu 4 133 0 221 313 12 12 chr6 6812906 6812989 -175602253 - MIR SINE MIR -12 250 168 210 316 38 0 chr6 6814119 6814198 -175601044 + L2 LINE L2 3231 3312 -1 198 24 24 49 chr6 6814683 6814724 -175600518 + (TTTG)n Simple_repeat Simple_repeat 2 41 0 2142 95 0 0 chr6 6814726 6815010 -175600232 - AluSx SINE Alu -28 284 1 233 71 0 0 chr6 6816249 6816277 -175598965 + MLT2C2 LTR ERVL 430 457 -7 315 209 27 0 chr6 6816683 6816793 -175598449 + GA-rich Low_complexity Low_complexity 2 114 0 854 227 39 0 chr6 6817013 6817216 -175598026 + L1MD2 LINE L1 6139 6349 -10 1069 184 23 14 chr6 6818368 6818585 -175596657 + MER20 DNA MER1_type 1 219 0 387 297 31 8 chr6 6819813 6819941 -175595301 + MIR SINE MIR 48 178 -84 511 250 275 18 chr6 6819952 6820232 -175595010 - LTR50 LTR ERVL -7 788 437 329 184 289 13 chr6 6820315 6820467 -175594775 - LTR50 LTR ERVL -581 214 21 235 231 62 31 chr6 6820484 6820549 -175594693 - L2 LINE L2 0 3272 3206 441 81 0 0 chr6 6821244 6821306 -175593936 + (GGATG)n Simple_repeat Simple_repeat 2 63 0 186 391 0 0 chr6 6822558 6822627 -175592615 + L2 LINE L2 3188 3256 -16 279 272 133 89 chr6 6823353 6823533 -175591709 + MIR SINE MIR 32 219 -43 268 356 60 20 chr6 6824382 6824531 -175590711 + L2 LINE L2 3096 3250 -22 771 243 65 9 chr6 6824549 6824763 -175590479 - MIR SINE MIR -3 259 34 513 160 0 25 chr6 6825104 6825223 -175590019 + CT-rich Low_complexity Low_complexity 3 118 0 267 122 0 0 chr6 6825394 6825443 -175589799 + (TC)n Simple_repeat Simple_repeat 2 50 0 259 297 59 25 chr6 6825560 6825678 -175589564 + L2 LINE L2 3180 3301 -12 468 293 79 11 chr6 6826689 6826955 -175588287 + L1ME4a LINE L1 5732 6015 -106 440 215 8 108 chr6 6827585 6827621 -175587621 + MER5B DNA MER1_type 1 39 -139 1030 191 14 101 chr6 6827621 6827976 -175587266 + MER33 DNA MER1_type 1 324 0 440 215 8 108 chr6 6827976 6828069 -175587173 + MER5B DNA MER1_type 39 117 -61 317 215 177 13 chr6 6828135 6828214 -175587028 - MIR SINE MIR -115 147 56 1023 143 7 7 chr6 6828390 6828544 -175586698 + MER5A DNA MER1_type 1 154 -35 667 187 112 8 chr6 6828550 6828684 -175586558 - MER58B DNA MER1_type -5 336 189 398 151 0 0 chr6 6828749 6828822 -175586420 - MER58B DNA MER1_type -161 180 108 185 262 0 0 chr6 6828833 6828875 -175586367 + MER5A DNA MER1_type 148 189 0 212 259 68 91 chr6 6829084 6829308 -175585934 + MIR3 SINE MIR 1 216 -46 347 156 0 56 chr6 6830256 6830346 -175584896 - L1PA3 LINE L1 -1 6154 6070 834 148 55 39 chr6 6830365 6830547 -175584695 - L1PA11 LINE L1 -80 6094 5910 1386 168 24 108 chr6 6832052 6832422 -175582820 - MER44D DNA MER2_type 0 609 1 889 210 11 0 chr6 6832863 6833049 -175582193 - MER5A DNA MER1_type 0 189 2 916 279 30 4 chr6 6833049 6833286 -175581956 + MIR SINE MIR 8 250 -12 2346 65 3 7 chr6 6833874 6834180 -175581062 - AluY SINE Alu -6 305 1 1386 191 48 22 chr6 6834975 6835289 -175579953 + MER33 DNA MER1_type 3 324 0 955 223 30 0 chr6 6835298 6835495 -175579747 - MER3 DNA MER1_type -1 208 6 2136 36 0 0 chr6 6835527 6835775 -175579467 - L1PA3 LINE L1 0 6155 5908 2298 15 0 11 chr6 6835775 6836041 -175579201 + L1PA3 LINE L1 5622 5884 -271 1889 218 130 2 chr6 6836263 6836695 -175578547 - MLT1D LTR MaLR 0 505 19 864 154 0 0 chr6 6837145 6837288 -175577954 + FLAM_C SINE Alu 1 143 0 1463 176 29 13 chr6 6837307 6837614 -175577628 + AluJo SINE Alu 1 312 0 304 269 0 0 chr6 6838563 6838630 -175576612 - MER91A DNA MER1_type -1 195 129 216 319 21 21 chr6 6839042 6839136 -175576106 - MER91A DNA MER1_type -67 129 36 1143 87 0 25 chr6 6839935 6840096 -175575146 - L1MA9 LINE L1 -623 5689 5533 2247 159 80 9 chr6 6840107 6840534 -175574708 + L1MA9 LINE L1 5705 6161 -151 300 273 0 0 chr6 6840534 6840655 -175574587 + (CA)n Simple_repeat Simple_repeat 1 121 0 352 113 0 42 chr6 6840682 6840753 -175574489 + L1MA9 LINE L1 6245 6312 0 1528 145 67 28 chr6 6841111 6841393 -175573849 + AluJb SINE Alu 1 293 -19 187 107 0 0 chr6 6841700 6841728 -175573514 - L3b LINE CR1 -12 1571 1544 490 308 79 23 chr6 6842181 6842395 -175572847 - MIR SINE MIR -2 260 35 319 273 33 8 chr6 6842638 6842759 -175572483 - LTR67 LTR ERVL -1 556 433 212 309 53 11 chr6 6842928 6843022 -175572220 - MER91C DNA MER1_type -30 110 13 417 267 99 0 chr6 6843090 6843191 -175572051 - MIR SINE MIR -144 118 8 3324 313 125 21 chr6 6843263 6844833 -175570409 + L2 LINE L2 670 2528 -785 420 20 0 0 chr6 6844833 6844882 -175570360 + (CA)n Simple_repeat Simple_repeat 1 49 0 3324 313 125 21 chr6 6844882 6845499 -175569743 + L2 LINE L2 2528 3079 -234 425 257 124 92 chr6 6845512 6845730 -175569512 - MIR SINE MIR -5 257 33 483 291 88 48 chr6 6845735 6845858 -175569384 + L2 LINE L2 3078 3195 -118 2438 146 3 3 chr6 6845858 6846222 -175569020 - THE1B LTR MaLR 0 364 1 483 291 88 48 chr6 6846222 6846325 -175568917 + L2 LINE L2 3195 3313 0 233 197 15 61 chr6 6846589 6846655 -175568587 + GA-rich Low_complexity Low_complexity 1 63 0 2015 96 7 0 chr6 6847210 6847482 -175567760 - AluSg SINE Alu -16 294 21 433 155 0 0 chr6 6847559 6847630 -175567612 - L1MA4A LINE L1 -43 6260 6190 2656 119 19 5 chr6 6847632 6848060 -175567182 - L1MA4A LINE L1 -184 6119 5686 2178 114 0 0 chr6 6848643 6848951 -175566291 + AluSx SINE Alu 1 308 -4 288 254 58 78 chr6 6850069 6850274 -175564968 - L3 LINE CR1 -163 1414 1214 1033 251 165 4 chr6 6850553 6851008 -175564234 + L2 LINE L2 2380 2907 -407 715 280 34 62 chr6 6851040 6851361 -175563881 + L2 LINE L2 2995 3306 -7 180 111 0 0 chr6 6852990 6853017 -175562225 + (GA)n Simple_repeat Simple_repeat 1 27 0 452 280 119 76 chr6 6853826 6854175 -175561067 - MLT1K LTR MaLR -17 571 197 2256 113 17 210 chr6 6854175 6854779 -175560463 + LTR45B LTR ERV1 3 489 0 452 280 119 76 chr6 6854779 6854876 -175560366 - MLT1K LTR MaLR -391 197 106 717 261 99 9 chr6 6854962 6855184 -175560058 + MIR SINE MIR 21 262 0 2301 87 0 13 chr6 6855504 6855813 -175559429 + AluSx SINE Alu 1 305 -7 349 282 100 36 chr6 6856643 6856863 -175558379 - MIR SINE MIR -9 253 20 194 352 45 11 chr6 6857159 6857247 -175557995 - L2 LINE L2 -1 3312 3222 280 272 51 4 chr6 6858833 6858930 -175556312 - MER91A DNA MER1_type -2 188 90 523 218 18 9 chr6 6858960 6859070 -175556172 - MER91A DNA MER1_type -81 115 5 408 265 86 124 chr6 6859453 6859710 -175555532 + L2 LINE L2 3023 3269 -3 1663 189 66 76 chr6 6859744 6860216 -175555026 - MLT1C LTR MaLR 0 467 1 249 338 144 7 chr6 6860238 6860377 -175554865 - MIR SINE MIR -71 191 34 186 276 236 24 chr6 6860394 6860517 -175554725 + MIR SINE MIR 10 158 -104 556 259 37 12 chr6 6861158 6861319 -175553923 + MIR SINE MIR 22 186 -63 644 111 96 15 chr6 6861507 6861642 -175553600 + L1MB3 LINE L1 6034 6179 -4 1961 106 7 0 chr6 6861918 6862227 -175553015 - AluSx SINE Alu 0 311 1 433 60 15 0 chr6 6862243 6862310 -175552932 + L1MB2 LINE L1 6103 6170 -1 322 305 188 8 chr6 6863575 6863703 -175551539 + MIR3 SINE MIR 51 201 -7 299 231 15 0 chr6 6864948 6865013 -175550229 + MER63 DNA MER1_type 685 750 -311 34984 84 7 10 chr6 6865030 6869815 -175545427 + L1P LINE L1 11 4780 -1366 237 277 0 15 chr6 6869817 6869882 -175545360 + L2 LINE L2 3205 3268 -4 1354 175 34 14 chr6 6870338 6870630 -175544612 - MER33 DNA MER1_type -24 300 3 523 290 45 57 chr6 6870665 6870899 -175544343 - MIR SINE MIR 0 262 37 2232 54 7 10 chr6 6871009 6871303 -175543939 + AluY SINE Alu 1 293 -18 270 0 0 0 chr6 6871345 6871375 -175543867 + (TG)n Simple_repeat Simple_repeat 2 31 0 1963 120 0 0 chr6 6871375 6871658 -175543584 - AluSx SINE Alu -29 283 1 971 256 127 9 chr6 6872201 6872517 -175542725 - MLT1J LTR MaLR -4 507 155 304 231 33 165 chr6 6872530 6872621 -175542621 - MLT1E LTR MaLR -244 410 250 314 203 17 0 chr6 6872692 6872751 -175542491 + LTR16B LTR ERVL 1 60 -404 635 152 7 80 chr6 6872753 6872891 -175542351 + FRAM SINE Alu 27 154 -22 2067 117 0 0 chr6 6872909 6873207 -175542035 + AluSc SINE Alu 2 299 -10 2269 81 3 0 chr6 6874449 6874745 -175540497 - AluSp SINE Alu -16 297 1 428 291 126 0 chr6 6875179 6875330 -175539912 + MIR SINE MIR 92 261 -1 246 156 0 0 chr6 6875426 6875471 -175539771 + (CA)n Simple_repeat Simple_repeat 2 46 0 301 302 51 51 chr6 6876301 6876516 -175538726 - L2 LINE L2 -373 2941 2727 25 31 0 0 chr6 6877183 6877215 -175538027 + AT_rich Low_complexity Low_complexity 1 32 0 1278 232 38 55 chr6 6877685 6878137 -175537105 - HsTC2 DNA Tc2 0 1900 1281 516 340 21 5 chr6 6878548 6878736 -175536506 + MIR SINE MIR 20 210 -52 196 330 70 9 chr6 6879383 6879498 -175535744 + MIR SINE MIR 69 190 -72 2502 56 0 0 chr6 6879670 6879973 -175535269 + AluSq SINE Alu 1 303 -10 527 211 24 0 chr6 6879989 6880155 -175535087 + CT-rich Low_complexity Low_complexity 1 170 0 272 200 0 0 chr6 6880885 6880935 -175534307 - MER103 DNA DNA -53 113 64 4375 206 109 8 chr6 6881240 6882219 -175533023 + Tigger6a DNA MER2_type 1 1078 -5 2231 163 10 3 chr6 6883114 6883501 -175531741 - MLT1B LTR MaLR 0 390 1 251 348 54 49 chr6 6883578 6883762 -175531480 + L2 LINE L2 2175 2359 -955 3994 138 19 32 chr6 6884539 6885263 -175529979 - L1PA16 LINE L1 -17 6149 5435 189 0 0 0 chr6 6885414 6885435 -175529807 + (CA)n Simple_repeat Simple_repeat 2 22 0 323 282 12 0 chr6 6886103 6886188 -175529054 + (TG)n Simple_repeat Simple_repeat 1 86 0 724 133 106 72 chr6 6886926 6887106 -175528136 - MLT1C LTR MaLR -279 188 3 4002 322 40 26 chr6 6887110 6888560 -175526682 + HERV16 LTR ERVL 1854 3323 -1673 2167 124 0 0 chr6 6890224 6890531 -175524711 + AluSg SINE Alu 1 307 -3 4422 136 58 22 chr6 6891345 6892101 -175523141 - LTR1 LTR ERV1 -2 783 1 304 265 20 61 chr6 6892555 6892653 -175522589 - MER5A DNA MER1_type -56 133 40 283 274 0 0 chr6 6893818 6893891 -175521351 + MER116 DNA Mariner 8 80 0 448 200 89 0 chr6 6894095 6894185 -175521057 + MER5A DNA MER1_type 9 106 -83 389 185 43 0 chr6 6894426 6894518 -175520724 - MLT1F LTR MaLR 0 542 447 * 637 230 0 15 chr6 6894489 6894624 -175520618 - MLT1E LTR MaLR -460 133 1 568 250 59 13 chr6 6894767 6894919 -175520323 + MER5B DNA MER1_type 17 175 -3 2112 98 13 10 chr6 6894927 6895232 -175520010 + AluSx SINE Alu 1 306 -6 211 170 0 43 chr6 6895500 6895547 -175519695 + GA-rich Low_complexity Low_complexity 4 48 0 2403 161 22 18 chr6 6895555 6895995 -175519247 + L1MC1 LINE L1 5882 6324 -4 1603 170 25 3 chr6 6895995 6896278 -175518964 - AluJb SINE Alu -22 290 2 23 0 0 0 chr6 6896283 6896306 -175518936 + AT_rich Low_complexity Low_complexity 1 23 0 388 296 170 6 chr6 6896428 6896587 -175518655 - MIR3 SINE MIR -6 202 18 821 144 24 0 chr6 6898303 6898428 -175516814 + FLAM_C SINE Alu 1 128 -15 2733 7 0 7 chr6 6899299 6899609 -175515633 + AluY SINE Alu 1 308 -3 251 205 33 131 chr6 6900019 6900141 -175515101 + MIR3 SINE MIR 51 160 -48 215 280 0 0 chr6 6900362 6900412 -175514830 + MIR3 SINE MIR 153 202 -6 2015 132 7 13 chr6 6900896 6901206 -175514036 + AluSx SINE Alu 1 308 -4 443 311 86 5 chr6 6902011 6902233 -175513009 - MLT1L LTR MaLR -1 614 375 2295 218 51 19 chr6 6902266 6902772 -175512470 + MER45B DNA AcHobo 1 526 -514 2084 116 13 3 chr6 6902772 6903082 -175512160 + AluSq SINE Alu 1 313 0 2295 218 51 19 chr6 6903082 6903102 -175512140 + MER45B DNA AcHobo 526 544 -496 794 209 0 7 chr6 6903688 6903841 -175511401 + FRAM SINE Alu 17 168 -8 24 32 0 0 chr6 6903841 6903872 -175511370 + AT_rich Low_complexity Low_complexity 1 31 0 235 273 68 11 chr6 6904353 6904441 -175510801 - MIR SINE MIR -97 111 19 1101 186 14 18 chr6 6904668 6904888 -175510354 - MER20 DNA MER1_type 0 219 1 366 244 33 0 chr6 6905032 6905122 -175510120 - MER89-int LTR ERV1 -4163 2638 2546 1985 107 0 69 chr6 6905166 6905485 -175509757 + AluSx SINE Alu 1 297 -15 1191 251 72 55 chr6 6907917 6908302 -175506940 - MER92C LTR ERV1 -2 552 154 1954 159 59 14 chr6 6908302 6908673 -175506569 - MLT1B LTR MaLR -2 388 1 1191 251 72 55 chr6 6908673 6908830 -175506412 - MER92C LTR ERV1 -400 154 1 1138 159 68 19 chr6 6910776 6910983 -175504259 + AluJo SINE Alu 85 301 -11 225 0 0 0 chr6 6911835 6911860 -175503382 + (A)n Simple_repeat Simple_repeat 1 25 0 1109 136 16 0 chr6 6912632 6912816 -175502426 + L1MA4 LINE L1 6107 6293 -7 2824 10 0 19 chr6 6912835 6913133 -175502109 + AluYa5 SINE Alu 1 294 -17 207 0 0 0 chr6 6913133 6913156 -175502086 + (TA)n Simple_repeat Simple_repeat 1 23 0 2824 10 0 19 chr6 6913156 6913170 -175502072 + AluYa5 SINE Alu 294 307 -4 2167 122 3 10 chr6 6913427 6913739 -175501503 + AluSx SINE Alu 2 311 -1 795 185 143 21 chr6 6914238 6914427 -175500815 - MER20 DNA MER1_type 0 219 8 668 203 78 78 chr6 6914441 6914762 -175500480 + MER33 DNA MER1_type 1 321 -3 2118 105 10 3 chr6 6915342 6915636 -175499606 - AluSq SINE Alu -13 300 5 207 0 0 0 chr6 6916064 6916087 -175499155 + (CAAAC)n Simple_repeat Simple_repeat 2 24 0 352 333 36 18 chr6 6916267 6916432 -175498810 - MIR3 SINE MIR -5 203 36 429 301 31 50 chr6 6917385 6917480 -175497762 + L1ME3A LINE L1 5852 5947 -223 3121 186 20 8 chr6 6917480 6918086 -175497156 + L1MB3 LINE L1 5565 6177 -6 429 301 31 50 chr6 6918086 6918309 -175496933 + L1ME3A LINE L1 5947 6164 -6 223 291 139 12 chr6 6919164 6919250 -175495992 - MIR3 SINE MIR -48 160 64 1824 174 16 10 chr6 6919250 6919560 -175495682 + AluJo SINE Alu 1 312 0 190 313 78 0 chr6 6919759 6919823 -175495419 - MIR3 SINE MIR -8 200 132 333 275 80 22 chr6 6923635 6923773 -175491469 + MIR SINE MIR 117 262 0 285 298 256 21 chr6 6923807 6924066 -175491176 - L3 LINE CR1 -41 1536 1339 2050 138 0 7 chr6 6924066 6924362 -175490880 - AluY SINE Alu -17 294 1 2289 116 0 3 chr6 6924362 6924663 -175490579 - AluSx SINE Alu -12 300 1 285 298 256 21 chr6 6924663 6924691 -175490551 - L3 LINE CR1 -237 1340 1180 581 296 108 35 chr6 6924762 6925133 -175490109 - L3 LINE CR1 -567 1010 613 317 318 139 9 chr6 6926208 6926431 -175488811 + MER112 DNA MER1_type 1 252 -8 377 278 56 0 chr6 6926449 6926575 -175488667 + HAL1 LINE L1 11 143 -2364 403 295 23 8 chr6 6927014 6927143 -175488099 + MLT1L LTR MaLR 449 579 -36 791 289 64 13 chr6 6927151 6927528 -175487714 + HAL1 LINE L1 1379 1774 -733 2343 232 40 2 chr6 6927681 6928212 -175487030 - MLT1F1 LTR MaLR -16 551 1 452 276 49 31 chr6 6928216 6928379 -175486863 + HAL1 LINE L1 2007 2172 -335 1787 129 43 0 chr6 6928388 6928644 -175486598 + AluSx SINE Alu 1 267 -45 5038 158 84 20 chr6 6928739 6930256 -175484986 + L1MC1 LINE L1 4720 6333 0 730 299 211 19 chr6 6932948 6933379 -175481863 + L2 LINE L2 2205 2718 -596 564 212 58 0 chr6 6935030 6935167 -175480075 - MIR SINE MIR -14 248 104 309 302 132 21 chr6 6935378 6935567 -175479675 + L2 LINE L2 2210 2419 -895 1403 272 71 29 chr6 6935712 6936230 -175479012 + MLT1F1 LTR MaLR 9 548 -19 360 348 105 0 chr6 6936241 6936422 -175478820 + L2 LINE L2 2649 2848 -466 2158 124 7 0 chr6 6937279 6937569 -175477673 - AluSx SINE Alu -20 292 1 297 246 55 27 chr6 6937725 6937835 -175477407 + L2 LINE L2 2967 3079 -234 217 227 27 13 chr6 6938483 6938558 -175476684 + (TTATA)n Simple_repeat Simple_repeat 5 80 0 227 164 16 49 chr6 6938614 6938675 -175476567 + (TATAA)n Simple_repeat Simple_repeat 1 59 0 423 188 134 27 chr6 6938755 6938867 -175476375 + MER63 DNA MER1_type 1 750 -312 275 267 0 13 chr6 6938853 6938928 -175476314 + MER63 DNA MER1_type 985 1058 -4 * 216 128 0 0 chr6 6939000 6939012 -175476230 + (A)n Simple_repeat Simple_repeat 1 12 -27 1851 159 6 49 chr6 6939012 6939339 -175475903 + AluSq SINE Alu 1 313 0 216 128 0 0 chr6 6939339 6939365 -175475877 + (A)n Simple_repeat Simple_repeat 11 39 0 184 356 27 0 chr6 6940224 6940297 -175474945 - L2 LINE L2 -31 3282 3208 348 242 134 13 chr6 6940651 6940800 -175474442 - MER104 DNA Tc2 -13 167 1 3963 158 154 30 chr6 6941821 6943103 -175472139 - pTR5 LTR ERV1 -8 2430 738 261 218 0 0 chr6 6943842 6943920 -175471322 + (CA)n Simple_repeat Simple_repeat 1 78 0 554 202 6 0 chr6 6943935 6944113 -175471129 + (CA)n Simple_repeat Simple_repeat 2 180 0 182 190 0 17 chr6 6944144 6944202 -175471040 + (CA)n Simple_repeat Simple_repeat 2 58 0 183 174 65 65 chr6 6944273 6944319 -175470923 + L2 LINE L2 3219 3264 -8 249 224 0 30 chr6 6944677 6944744 -175470498 + (TATATG)n Simple_repeat Simple_repeat 6 70 0 239 210 16 0 chr6 6944745 6944807 -175470435 - L1MC4 LINE L1 -1340 6702 6640 342 0 0 0 chr6 6945353 6945391 -175469851 + (CA)n Simple_repeat Simple_repeat 2 39 0 213 65 0 0 chr6 6947363 6947394 -175467848 + (TA)n Simple_repeat Simple_repeat 2 32 0 210 71 0 0 chr6 6948562 6948590 -175466652 + (CCCCCT)n Simple_repeat Simple_repeat 2 29 0 395 137 14 0 chr6 6949400 6949473 -175465769 + GA-rich Low_complexity Low_complexity 3 76 0 264 250 10 87 chr6 6949888 6949945 -175465297 + MER21B LTR ERV1 12 59 -804 228 35 0 0 chr6 6949945 6949974 -175465268 + (CAAA)n Simple_repeat Simple_repeat 4 32 0 264 250 10 87 chr6 6949974 6950020 -175465222 + MER21B LTR ERV1 59 107 -756 2483 236 111 26 chr6 6950020 6950786 -175464456 + MER21B LTR ERV1 22 852 -11 837 177 58 22 chr6 6950909 6951135 -175464107 + MER33 DNA MER1_type 9 242 -82 2475 138 52 54 chr6 6951151 6951170 -175464072 - L1MB3 LINE L1 -17 6166 6148 2262 106 0 0 chr6 6951170 6951463 -175463779 - AluSg SINE Alu -17 293 1 2475 138 52 54 chr6 6951463 6951924 -175463318 - L1MB3 LINE L1 -35 6148 5617 2322 110 3 0 chr6 6951924 6952233 -175463009 - AluSg SINE Alu 0 310 1 2475 138 52 54 chr6 6952233 6952504 -175462738 - L1MB3 LINE L1 -566 5617 5347 549 106 0 43 chr6 6952505 6952599 -175462643 + MER33 DNA MER1_type 273 362 -1 2266 110 3 3 chr6 6953021 6953321 -175461921 + AluSq SINE Alu 1 300 -13 2226 119 10 3 chr6 6953770 6954081 -175461161 - AluSq SINE Alu 0 313 1 2342 105 0 3 chr6 6954352 6954665 -175460577 + AluSx SINE Alu 1 312 0 214 300 27 55 chr6 6954827 6954937 -175460305 + MIR SINE MIR 98 204 -58 1761 163 7 14 chr6 6955202 6955497 -175459745 + AluJo SINE Alu 1 293 -19 303 207 97 10 chr6 6956823 6956930 -175458312 + MER53 DNA DNA 10 123 -66 4672 158 144 31 chr6 6958507 6959914 -175455328 - pTR5 LTR ERV1 0 2438 742 316 273 120 13 chr6 6960175 6960325 -175454917 - L2 LINE L2 -328 2985 2820 2149 273 103 50 chr6 6960335 6960624 -175454618 - L2 LINE L2 -650 2664 2392 2042 63 0 0 chr6 6960624 6960876 -175454366 - L1PA6 LINE L1 -4 6150 5899 2149 273 103 50 chr6 6960876 6961149 -175454093 - L2 LINE L2 -922 2392 2135 1272 230 26 10 chr6 6961149 6961453 -175453789 + AluJb SINE Alu 4 312 0 2149 273 103 50 chr6 6961453 6961612 -175453630 - L2 LINE L2 -1179 2135 1986 2066 140 110 8 chr6 6961612 6962004 -175453238 + MSTB1 LTR MaLR 1 432 0 2149 273 103 50 chr6 6962004 6962481 -175452761 - L2 LINE L2 -1328 1986 1400 1401 155 83 31 chr6 6962497 6962787 -175452455 + MSTB LTR MaLR 1 305 -121 250 91 0 0 chr6 6962796 6962829 -175452413 - MER58 DNA MER1_type -2216 204 172 662 78 12 18 chr6 6962830 6963085 -175452157 + AluSg SINE Alu 1 306 -4 717 204 117 0 chr6 6963085 6963247 -175451995 - MER58 DNA MER1_type -160 181 1 31 20 0 20 chr6 6964018 6964047 -175451195 + AT_rich Low_complexity Low_complexity 1 30 -18 1915 103 13 43 chr6 6964047 6964347 -175450895 - AluSx SINE Alu -21 291 1 31 20 0 20 chr6 6964347 6964366 -175450876 + AT_rich Low_complexity Low_complexity 30 48 0 537 168 9 62 chr6 6964444 6964557 -175450685 - MSTA LTR MaLR -321 107 1 2067 109 3 7 chr6 6964661 6964963 -175450279 - AluSx SINE Alu -11 301 1 509 279 90 31 chr6 6965113 6965335 -175449907 + MIR SINE MIR 20 254 -8 240 214 0 0 chr6 6965410 6965452 -175449790 + L2 LINE L2 3258 3299 -14 2073 97 30 3 chr6 6965764 6966062 -175449180 + AluSc SINE Alu 1 306 -3 189 0 0 0 chr6 6966815 6966836 -175448406 + (TG)n Simple_repeat Simple_repeat 2 22 0 2832 168 10 27 chr6 6967153 6967700 -175447542 + L1MB3 LINE L1 5633 6160 -15 2122 117 0 0 chr6 6967816 6968116 -175447126 + AluSx SINE Alu 1 300 -12 870 164 0 16 chr6 6968133 6968316 -175446926 + GA-rich Low_complexity Low_complexity 1 180 0 270 136 0 0 chr6 6968316 6968360 -175446882 + (GGA)n Simple_repeat Simple_repeat 3 46 0 584 266 104 57 chr6 6969706 6970109 -175445133 - LTR16A LTR ERVL -7 443 22 358 218 89 65 chr6 6970247 6970348 -175444894 + L2 LINE L2 3186 3292 -21 2263 73 0 13 chr6 6970348 6970648 -175444594 - AluY SINE Alu -15 296 1 358 218 89 65 chr6 6970648 6970670 -175444572 + L2 LINE L2 3292 3312 -1 204 315 79 47 chr6 6970845 6970972 -175444270 + MIR3 SINE MIR 73 203 -5 2175 81 3 0 chr6 6971288 6971593 -175443649 + AluSp SINE Alu 1 306 0 194 314 0 0 chr6 6971608 6971659 -175443583 + L2 LINE L2 3213 3263 -9 362 301 90 8 chr6 6971992 6972125 -175443117 - MIR SINE MIR -118 144 1 619 219 89 89 chr6 6972255 6972570 -175442672 - MER102a DNA MER1_type -15 315 1 692 224 5 57 chr6 6972731 6972941 -175442301 - HAL1 LINE L1 -119 2388 2190 1893 204 9 61 chr6 6972984 6973444 -175441798 - MER41B LTR ERV1 -38 597 162 1739 258 108 14 chr6 6973505 6974145 -175441097 - HAL1 LINE L1 -304 2203 1504 7554 26 1 1 chr6 6974152 6975438 -175439804 + L1PA4 LINE L1 4882 6167 0 681 129 9 35 chr6 6975991 6976107 -175439135 + AluSq/x SINE Alu 23 135 -178 225 229 17 68 chr6 6976110 6976228 -175439014 - L1MC5 LINE L1 -247 7714 7603 380 279 27 20 chr6 6976450 6976597 -175438645 - L1MC5 LINE L1 -522 7439 7292 * 459 330 58 10 chr6 6976565 6976859 -175438383 - L1MC4a LINE L1 -393 7415 7108 379 83 0 0 chr6 6977560 6977620 -175437622 - L1PA8 LINE L1 -2 6170 6111 1963 108 0 0 chr6 6977701 6977969 -175437273 - AluSx SINE Alu -44 268 1 27 0 0 0 chr6 6978635 6978662 -175436580 + AT_rich Low_complexity Low_complexity 1 27 0 585 67 13 0 chr6 6979277 6979352 -175435890 + AluSq/x SINE Alu 64 139 -174 1676 100 4 0 chr6 6979352 6979582 -175435660 + AluSp SINE Alu 68 298 -15 497 292 152 0 chr6 6979686 6979857 -175435385 + MIR SINE MIR 29 225 -37 23 54 0 0 chr6 6980016 6980053 -175435189 + AT_rich Low_complexity Low_complexity 1 37 0 207 111 0 28 chr6 6980134 6980170 -175435072 + (TTTA)n Simple_repeat Simple_repeat 4 38 0 185 35 69 0 chr6 6981242 6981271 -175433971 + T-rich Low_complexity Low_complexity 1 31 0 186 43 0 0 chr6 6981291 6981314 -175433928 + (TA)n Simple_repeat Simple_repeat 1 23 0 551 235 190 6 chr6 6981315 6981494 -175433748 + MER112 DNA MER1_type 49 260 0 1894 131 36 162 chr6 6981618 6981675 -175433567 - MER31B LTR ERV1 -7 459 396 764 168 0 15 chr6 6981675 6981806 -175433436 + FLAM_C SINE Alu 2 130 -3 1894 131 36 162 chr6 6981806 6982273 -175432969 - MER31B LTR ERV1 -70 396 1 2004 271 99 74 chr6 6982448 6982483 -175432759 + HAL1 LINE L1 116 149 -2358 261 0 0 0 chr6 6982483 6982512 -175432730 + (TTA)n Simple_repeat Simple_repeat 2 30 0 2004 271 99 74 chr6 6982512 6984158 -175431084 + HAL1 LINE L1 149 1839 -668 2438 66 3 0 chr6 6984300 6984603 -175430639 - AluSp SINE Alu -9 304 1 454 235 63 75 chr6 6985088 6985356 -175429886 + HAL1 LINE L1 1974 2238 -269 819 251 215 36 chr6 6985377 6985763 -175429479 - LTR33 LTR ERVL -64 457 3 286 240 62 54 chr6 6985868 6985997 -175429245 + HAL1 LINE L1 2375 2504 -3 238 25 25 25 chr6 6986023 6986063 -175429179 + (CAAAA)n Simple_repeat Simple_repeat 1 40 0 387 286 182 0 chr6 6986113 6986267 -175428975 + MIR SINE MIR 37 218 -44 263 282 24 47 chr6 6986366 6986451 -175428791 + L2 LINE L2 3184 3266 -6 273 321 0 0 chr6 6987382 6987463 -175427779 + MLT1L LTR MaLR 412 492 -123 24 32 0 0 chr6 6987650 6987681 -175427561 + AT_rich Low_complexity Low_complexity 1 31 0 811 165 0 0 chr6 6987681 6987802 -175427440 - FLAM_A SINE Alu -12 121 1 347 328 16 8 chr6 6988370 6988498 -175426744 - MER5A DNA MER1_type -5 184 56 312 233 42 42 chr6 6988394 6988514 -175426728 + MER5A DNA MER1_type 41 160 -29 * 1747 158 0 10 chr6 6988601 6988898 -175426344 - AluJb SINE Alu -1 311 18 183 271 14 43 chr6 6991149 6991204 -175424038 + L2 LINE L2 3165 3220 -93 2034 116 0 0 chr6 6991204 6991511 -175423731 - AluSq SINE Alu 0 307 1 183 271 14 43 chr6 6991511 6991524 -175423718 + L2 LINE L2 3220 3232 -81 270 226 200 43 chr6 6992374 6992489 -175422753 + MIR SINE MIR 124 256 -6 254 318 79 16 chr6 6992590 6992716 -175422526 - MARNA DNA Mariner -380 206 73 2133 69 0 34 chr6 6993004 6993329 -175421913 + AluY SINE Alu 3 317 0 2047 137 0 0 chr6 6993496 6993803 -175421439 - AluSx SINE Alu -5 307 1 587 308 67 5 chr6 6993805 6994013 -175421229 - MIR SINE MIR -36 226 6 2422 149 38 33 chr6 6994174 6994598 -175420644 + MSTB LTR MaLR 1 426 0 2320 143 30 40 chr6 6995908 6996240 -175419002 - MSTC LTR MaLR -1 427 98 2438 63 0 0 chr6 6996240 6996542 -175418700 - AluY SINE Alu -9 302 1 2320 143 30 40 chr6 6996542 6996637 -175418605 - MSTC LTR MaLR -330 98 4 292 341 82 12 chr6 6997004 6997174 -175418068 + L2 LINE L2 2935 3116 -197 356 246 6 0 chr6 6997282 6997457 -175417785 + CT-rich Low_complexity Low_complexity 2 177 0 405 0 0 0 chr6 6997459 6997504 -175417738 + (CA)n Simple_repeat Simple_repeat 1 45 0 213 319 56 0 chr6 6997881 6997953 -175417289 - MIR SINE MIR -68 140 65 2210 112 0 0 chr6 6998076 6998379 -175416863 - AluSx SINE Alu -9 303 1 420 255 134 13 chr6 7000227 7000376 -175414866 - MIR SINE MIR -76 186 20 224 203 8 98 chr6 7001368 7001501 -175413741 + CT-rich Low_complexity Low_complexity 1 121 0 356 288 102 0 chr6 7001633 7001751 -175413491 + MLT1J LTR MaLR 67 196 -315 401 185 12 0 chr6 7001773 7001854 -175413388 - FRAM/FAM SINE Alu -93 82 1 449 273 16 23 chr6 7001857 7001985 -175413257 + MLT1J LTR MaLR 184 310 -201 343 286 44 55 chr6 7002679 7002861 -175412381 + LTR16C LTR ERVL 312 491 0 554 243 40 28 chr6 7002861 7003038 -175412204 + MLT1J LTR MaLR 311 489 -22 1898 116 42 0 chr6 7003063 7003348 -175411894 + AluSx SINE Alu 1 297 -15 460 289 159 32 chr6 7003700 7003977 -175411265 + MLT1I LTR MaLR 22 333 -76 1011 141 0 0 chr6 7005540 7005696 -175409546 - FRAM SINE Alu -12 164 9 249 250 31 73 chr6 7005904 7006000 -175409242 + MIR3 SINE MIR 108 199 -9 455 253 77 6 chr6 7006386 7006556 -175408686 + L1MB8 LINE L1 5944 6125 -53 1925 130 0 14 chr6 7006572 7006864 -175408378 - AluSx SINE Alu -24 288 1 679 313 25 10 chr6 7007483 7007684 -175407558 + MIR SINE MIR 51 254 -8 216 97 0 0 chr6 7008557 7008588 -175406654 + (GGA)n Simple_repeat Simple_repeat 2 32 0 610 218 14 49 chr6 7009300 7009442 -175405800 - FLAM_A SINE Alu 0 142 6 284 254 203 17 chr6 7009608 7009726 -175405516 + MIR SINE MIR 106 245 -17 256 284 165 31 chr6 7009723 7009850 -175405392 - MIR3 SINE MIR -35 173 30 * 1935 74 67 7 chr6 7009864 7010202 -175405040 - AluY SINE Alu 0 354 1 1217 55 0 0 chr6 7010202 7010347 -175404895 - AluSq/x SINE Alu -167 145 1 341 88 35 0 chr6 7010914 7010971 -175404271 + CT-rich Low_complexity Low_complexity 1 59 0 319 307 79 18 chr6 7010978 7011092 -175404150 - L2 LINE L2 0 3313 3193 351 177 21 115 chr6 7012171 7012230 -175403012 - MER103 DNA DNA -77 89 41 1520 166 10 40 chr6 7012230 7012531 -175402711 - AluJo SINE Alu -20 292 1 351 177 21 115 chr6 7012531 7012567 -175402675 - MER103 DNA DNA -125 41 3 213 211 0 0 chr6 7012651 7012689 -175402553 + (CA)n Simple_repeat Simple_repeat 2 39 0 1141 248 56 12 chr6 7013164 7013483 -175401759 - MER46C DNA MER2_type 0 338 6 2213 89 0 16 chr6 7013902 7014216 -175401026 - AluY SINE Alu -2 309 1 2065 109 23 0 chr6 7014720 7014923 -175400319 - AluSg SINE Alu 0 329 115 243 0 0 0 chr6 7014923 7014950 -175400292 + (TTTG)n Simple_repeat Simple_repeat 3 29 0 2065 109 23 0 chr6 7014950 7015068 -175400174 - AluSg SINE Alu -214 115 1 267 102 61 20 chr6 7015821 7015870 -175399372 + MIR SINE MIR 199 249 -13 2213 89 3 0 chr6 7016036 7016328 -175398914 + AluSp SINE Alu 1 293 -20 1416 213 117 47 chr6 7016353 7016562 -175398680 + L1MD2 LINE L1 5914 6107 -252 180 0 0 0 chr6 7016562 7016582 -175398660 + (CA)n Simple_repeat Simple_repeat 1 20 0 1416 213 117 47 chr6 7016582 7016775 -175398467 + L1MD2 LINE L1 6107 6344 -15 319 310 60 10 chr6 7016938 7017038 -175398204 + MER91C DNA MER1_type 36 140 0 208 135 0 0 chr6 7018154 7018191 -175397051 + (CCCA)n Simple_repeat Simple_repeat 3 39 0 248 197 0 14 chr6 7018439 7018510 -175396732 + GA-rich Low_complexity Low_complexity 5 74 0 572 202 10 0 chr6 7018541 7018645 -175396597 + MIR SINE MIR 53 157 -105 658 168 27 0 chr6 7018652 7018801 -175396441 + (ATGGTG)n Simple_repeat Simple_repeat 3 155 0 977 109 35 0 chr6 7018910 7019084 -175396158 + (ATGGTG)n Simple_repeat Simple_repeat 1 180 0 296 263 32 11 chr6 7019084 7019179 -175396063 + MIR SINE MIR 149 245 -17 415 224 51 10 chr6 7020016 7020114 -175395128 + MIR SINE MIR 87 188 -74 764 179 0 0 chr6 7020288 7020411 -175394831 + FLAM_C SINE Alu 1 123 -20 364 214 10 10 chr6 7020467 7020570 -175394672 + GA-rich Low_complexity Low_complexity 1 103 0 220 39 0 0 chr6 7020575 7020601 -175394641 + (GA)n Simple_repeat Simple_repeat 2 27 0 356 302 24 48 chr6 7021920 7022046 -175393196 + MIR3 SINE MIR 63 185 -23 200 59 29 0 chr6 7023040 7023074 -175392168 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 211 277 31 0 chr6 7024368 7024433 -175390809 + GA-rich Low_complexity Low_complexity 1 67 0 1776 154 0 0 chr6 7024594 7024874 -175390368 + AluJb SINE Alu 1 280 -32 1941 104 17 0 chr6 7024874 7025161 -175390081 + AluY SINE Alu 17 310 -1 240 111 0 0 chr6 7025161 7025197 -175390045 + (GGGA)n Simple_repeat Simple_repeat 1 36 0 1043 153 5 37 chr6 7025197 7025387 -175389855 + L1PA15 LINE L1 5982 6165 0 1821 160 0 10 chr6 7025389 7025696 -175389546 + AluSx SINE Alu 1 304 -8 21 36 0 0 chr6 7025936 7025964 -175389278 + AT_rich Low_complexity Low_complexity 1 28 0 1486 218 113 109 chr6 7026072 7026168 -175389074 - Charlie7 DNA MER1_type -147 2465 2371 2331 68 3 0 chr6 7026168 7026461 -175388781 + AluY SINE Alu 1 294 -17 1486 218 113 109 chr6 7026461 7027342 -175387900 - Charlie7 DNA MER1_type -241 2371 1485 242 246 0 0 chr6 7027366 7027423 -175387819 + L1MC4 LINE L1 6649 6705 -1337 302 287 96 44 chr6 7027501 7027637 -175387605 - Charlie7 DNA MER1_type -2328 284 142 1844 170 0 0 chr6 7027648 7027960 -175387282 + AluJb SINE Alu 1 312 0 577 320 13 53 chr6 7028102 7028273 -175386969 + MIR SINE MIR 46 207 -55 2075 104 0 10 chr6 7028273 7028571 -175386671 - AluSg SINE Alu -15 295 1 577 320 13 53 chr6 7028571 7028624 -175386618 + MIR SINE MIR 207 261 -1 399 367 67 11 chr6 7028670 7028940 -175386302 - L2 LINE L2 -665 2649 2365 817 236 132 0 chr6 7028940 7029152 -175386090 - MIR SINE MIR -10 252 13 2201 98 3 0 chr6 7030318 7030615 -175384627 + AluSx SINE Alu 1 298 -14 293 184 35 14 chr6 7031591 7031732 -175383510 + CT-rich Low_complexity Low_complexity 1 144 0 901 311 86 6 chr6 7031933 7032271 -175382971 - LTR16C LTR ERVL -2 489 125 274 156 31 0 chr6 7032349 7032413 -175382829 + (TA)n Simple_repeat Simple_repeat 1 66 0 305 218 24 48 chr6 7032709 7032833 -175382409 + LTR67 LTR ERVL 426 546 -11 298 273 0 0 chr6 7033008 7033074 -175382168 + L2 LINE L2 3205 3270 -2 525 208 0 10 chr6 7033294 7033395 -175381847 + MER45A DNA AcHobo 79 178 0 825 124 0 0 chr6 7033945 7034074 -175381168 + (GGAA)n Simple_repeat Simple_repeat 1 129 0 302 198 47 0 chr6 7034078 7034184 -175381058 + GA-rich Low_complexity Low_complexity 5 115 0 21 36 0 0 chr6 7035032 7035060 -175380182 + AT_rich Low_complexity Low_complexity 1 28 0 207 0 0 0 chr6 7035484 7035507 -175379735 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 531 244 30 75 chr6 7035782 7035983 -175379259 + MER112 DNA MER1_type 52 243 -17 1938 118 20 0 chr6 7035985 7036338 -175378904 - AluSx SINE Alu 0 359 1 272 218 90 13 chr6 7036765 7036843 -175378399 + LTR33A LTR ERVL 440 523 0 1779 129 0 0 chr6 7037133 7037388 -175377854 - AluSx SINE Alu -56 256 2 409 210 25 4 chr6 7037803 7037922 -175377320 + MER5A DNA MER1_type 24 186 -3 270 327 80 43 chr6 7038009 7038171 -175377071 + MIR SINE MIR 19 186 -76 306 328 11 17 chr6 7038376 7038550 -175376692 + A-rich Low_complexity Low_complexity 3 175 0 299 210 0 12 chr6 7039083 7039164 -175376078 + GA-rich Low_complexity Low_complexity 4 83 0 933 143 0 0 chr6 7040880 7041013 -175374229 - FLAM_C SINE Alu 0 133 1 7183 159 88 104 chr6 7041268 7041867 -175373375 - L1MC3 LINE L1 0 7785 7177 234 266 0 16 chr6 7041867 7041931 -175373311 - MLT1F1 LTR MaLR -460 107 45 7183 159 88 104 chr6 7041931 7043272 -175371970 - L1MC3 LINE L1 -608 7177 5810 465 285 201 11 chr6 7043345 7043608 -175371634 + L2 LINE L2 3001 3313 0 1851 119 25 14 chr6 7043878 7044164 -175371078 + AluSx SINE Alu 1 289 -23 1851 105 0 66 chr6 7044164 7044513 -175370729 + AluSx SINE Alu 1 329 0 1081 273 133 8 chr6 7044625 7045009 -175370233 + MER115 DNA AcHobo 5 436 -257 583 305 65 40 chr6 7045395 7045825 -175369417 - L1MC3 LINE L1 -405 5716 5276 1892 167 0 0 chr6 7046185 7046497 -175368745 - AluSx SINE Alu 0 312 1 226 361 139 5 chr6 7046701 7046917 -175368325 - L2 LINE L2 -1 3271 3027 636 177 18 0 chr6 7046923 7047036 -175368206 + FRAM SINE Alu 44 158 -18 1500 105 5 0 chr6 7047055 7047265 -175367977 - AluSg/x SINE Alu -17 295 85 187 86 57 29 chr6 7047577 7047612 -175367630 - MER5A DNA MER1_type -26 163 128 2209 90 0 3 chr6 7047615 7047916 -175367326 + AluSc SINE Alu 1 300 -9 610 281 77 108 chr6 7048225 7048617 -175366625 + MLT1K LTR MaLR 134 510 -78 657 178 31 8 chr6 7048617 7048746 -175366496 - FLAM_C SINE Alu 0 133 2 610 281 77 108 chr6 7048746 7048823 -175366419 + MLT1K LTR MaLR 510 588 0 1276 203 8 4 chr6 7049813 7050050 -175365192 + MER8 DNA MER2_type 2 239 0 822 201 12 6 chr6 7050050 7050214 -175365028 + MER58B DNA MER1_type 177 341 0 461 201 21 111 chr6 7050419 7050521 -175364721 - L2 LINE L2 -1 3312 3225 2081 133 0 13 chr6 7050521 7050838 -175364404 + AluSq SINE Alu 1 313 0 461 201 21 111 chr6 7050838 7050879 -175364363 - L2 LINE L2 -88 3225 3182 240 200 71 14 chr6 7050915 7050985 -175364257 - MIR SINE MIR -97 111 38 1952 105 10 10 chr6 7051835 7052129 -175363113 + AluSx SINE Alu 1 294 -18 715 250 71 95 chr6 7052427 7052646 -175362596 - L2 LINE L2 0 3313 3090 667 144 127 0 chr6 7052646 7052764 -175362478 + AluJo SINE Alu 1 133 -169 715 250 71 95 chr6 7052764 7052777 -175362465 - L2 LINE L2 -223 3090 3078 2259 105 0 6 chr6 7052777 7053091 -175362151 + AluSx SINE Alu 1 312 0 1245 202 73 35 chr6 7053095 7053382 -175361860 + AluJb SINE Alu 2 299 -3 715 250 71 95 chr6 7053382 7053639 -175361603 - L2 LINE L2 -238 3075 2830 262 278 56 0 chr6 7053835 7053925 -175361317 + L2 LINE L2 3217 3311 -2 224 279 63 0 chr6 7054585 7054664 -175360578 - MER5A DNA MER1_type -73 116 33 676 239 117 5 chr6 7054745 7054942 -175360300 - MIR SINE MIR -26 236 18 197 203 102 34 chr6 7056312 7056371 -175358871 - MIR3 SINE MIR -133 75 13 1315 215 39 16 chr6 7056666 7056978 -175358264 - MER33 DNA MER1_type 0 324 6 296 100 0 20 chr6 7057120 7057170 -175358072 + (GGAA)n Simple_repeat Simple_repeat 2 50 0 978 134 0 0 chr6 7057252 7057401 -175357841 + AluJo SINE Alu 134 282 -30 21 0 0 0 chr6 7057401 7057422 -175357820 + AT_rich Low_complexity Low_complexity 1 21 0 2082 119 3 0 chr6 7057593 7057896 -175357346 + AluSq SINE Alu 1 304 -9 243 88 0 0 chr6 7058394 7058428 -175356814 + (T)n Simple_repeat Simple_repeat 1 34 0 198 0 0 0 chr6 7058706 7058728 -175356514 + (TTCA)n Simple_repeat Simple_repeat 2 23 0 209 156 0 0 chr6 7059158 7059190 -175356052 + MIR SINE MIR 114 145 -63 968 227 158 27 chr6 7059222 7059628 -175355614 - LTR16B LTR ERVL -4 460 2 2285 148 16 3 chr6 7059646 7060031 -175355211 - MLT1B LTR MaLR 0 390 1 348 331 39 6 chr6 7060113 7060291 -175354951 - HERV16 LTR ERVL -361 5403 5220 268 265 116 48 chr6 7060667 7060814 -175354428 - HERV16 LTR ERVL -4435 561 405 213 265 229 0 chr6 7061097 7061180 -175354062 + MIR SINE MIR 101 202 -60 1684 212 8 33 chr6 7061186 7061549 -175353693 + MLT1A1 LTR MaLR 1 354 -11 481 340 71 30 chr6 7061592 7061889 -175353353 + L1MC4a LINE L1 4619 4927 -1219 376 233 0 23 chr6 7061956 7062042 -175353200 - MER96 DNA MER1_type? -1 174 91 292 305 130 7 chr6 7062121 7062275 -175352967 + L1MC4a LINE L1 5729 5901 -1907 2346 58 0 0 chr6 7062992 7063283 -175351959 - AluY SINE Alu -14 297 7 27 0 0 0 chr6 7063332 7063359 -175351883 + AT_rich Low_complexity Low_complexity 1 27 0 2874 150 41 44 chr6 7063361 7063926 -175351316 + L1MB8 LINE L1 5476 6038 -140 1818 188 49 10 chr6 7063927 7064336 -175350906 - L1MC1 LINE L1 0 6333 5909 738 180 20 13 chr6 7064337 7064487 -175350755 + L1MB8 LINE L1 6027 6177 -1 1674 140 0 4 chr6 7064902 7065166 -175350076 - AluJo SINE Alu -9 303 41 611 145 192 87 chr6 7065305 7065477 -175349765 - MER20 DNA MER1_type -1 218 29 225 65 0 0 chr6 7065482 7065513 -175349729 + (TC)n Simple_repeat Simple_repeat 2 32 0 336 326 64 28 chr6 7065928 7066069 -175349173 - MIR SINE MIR -12 250 105 573 157 352 179 chr6 7066083 7066316 -175348926 + MLT1H LTR MaLR 14 206 -343 2293 89 0 0 chr6 7066316 7066620 -175348622 + AluY SINE Alu 1 304 -7 573 157 352 179 chr6 7066620 7066821 -175348421 + MLT1H LTR MaLR 206 549 0 723 207 47 61 chr6 7067610 7067823 -175347419 + MER63A DNA MER1_type 1 210 0 682 313 78 14 chr6 7067850 7068134 -175347108 - MLT1J LTR MaLR 0 511 210 931 135 0 59 chr6 7068181 7068351 -175346891 - AluJo SINE Alu -17 295 136 264 279 171 16 chr6 7068414 7068543 -175346699 - MLT1J LTR MaLR -362 149 1 304 261 52 0 chr6 7068789 7068904 -175346338 - MER113 DNA MER1_type? -399 122 2 294 203 0 16 chr6 7068921 7068985 -175346257 - MIR SINE MIR -61 147 85 1789 133 11 11 chr6 7069033 7069318 -175345924 + AluJb SINE Alu 1 285 -27 217 369 67 34 chr6 7070053 7070232 -175345010 + L3b LINE CR1 1372 1556 -27 928 249 39 35 chr6 7071162 7071419 -175343823 - MLT1J LTR MaLR 0 511 254 894 250 169 43 chr6 7071423 7071907 -175343335 + MLT1H LTR MaLR 1 545 -4 2257 90 3 0 chr6 7072211 7072547 -175342695 + AluSx SINE Alu 1 337 0 27 48 0 32 chr6 7072565 7072589 -175342653 + AT_rich Low_complexity Low_complexity 1 24 -37 760 171 0 23 chr6 7072589 7072718 -175342524 - AluJo SINE Alu -176 126 1 27 48 0 32 chr6 7072718 7072756 -175342486 + AT_rich Low_complexity Low_complexity 24 61 0 363 347 70 14 chr6 7072967 7073180 -175342062 + L3b LINE CR1 1351 1575 -8 300 255 39 20 chr6 7073217 7073319 -175341923 - L2 LINE L2 -32 3281 3178 593 165 122 17 chr6 7073453 7073568 -175341674 + FLAM_C SINE Alu 1 127 -6 1540 248 118 83 chr6 7073718 7074160 -175341082 + Charlie2a DNA MER1_type 36 461 -2401 237 83 0 0 chr6 7074160 7074196 -175341046 + (TG)n Simple_repeat Simple_repeat 1 36 0 1540 248 118 83 chr6 7074196 7074539 -175340703 + Charlie2a DNA MER1_type 461 791 -2071 6530 42 0 0 chr6 7074539 7075309 -175339933 + L1PA6 LINE L1 5384 6153 -1 1540 248 118 83 chr6 7075309 7075383 -175339859 + Charlie2a DNA MER1_type 791 861 -2001 1837 102 0 8 chr6 7075383 7075638 -175339604 + AluSx SINE Alu 47 299 -13 1540 248 118 83 chr6 7075638 7075678 -175339564 + Charlie2a DNA MER1_type 861 968 -1894 631 331 35 3 chr6 7075744 7076034 -175339208 - L1MC4a LINE L1 -1878 5930 5632 1998 128 3 0 chr6 7076709 7076999 -175338243 + AluSq SINE Alu 6 296 -17 541 225 0 180 chr6 7077028 7077295 -175337947 - MIR SINE MIR -8 254 36 360 0 0 0 chr6 7077300 7077340 -175337902 + (TG)n Simple_repeat Simple_repeat 2 41 0 1423 259 80 35 chr6 7077358 7077436 -175337806 - MLT1J LTR MaLR -3 508 435 2250 113 0 0 chr6 7077436 7077745 -175337497 + AluSg SINE Alu 1 309 -1 1423 259 80 35 chr6 7077745 7078152 -175337090 - MLT1J LTR MaLR -76 435 1 373 307 246 34 chr6 7078165 7079018 -175336224 - L3 LINE CR1 0 1577 544 400 245 93 29 chr6 7079210 7079349 -175335893 - L2 LINE L2 0 3272 3125 * 594 267 99 29 chr6 7079340 7079574 -175335668 + L2 LINE L2 2682 2898 -415 579 53 0 0 chr6 7079574 7079649 -175335593 + (CATAC)n Simple_repeat Simple_repeat 2 76 0 594 267 99 29 chr6 7079649 7079925 -175335317 + L2 LINE L2 2898 3233 -80 273 119 0 0 chr6 7079982 7080024 -175335218 + (GGAA)n Simple_repeat Simple_repeat 4 45 0 295 275 161 34 chr6 7080051 7080200 -175335042 - L2 LINE L2 -176 3096 2929 302 401 70 13 chr6 7080300 7080513 -175334729 - L2 LINE L2 -508 2806 2606 580 274 60 19 chr6 7080513 7080604 -175334638 - MER58A DNA MER1_type -2196 224 138 1916 146 3 3 chr6 7080604 7080912 -175334330 + AluJo SINE Alu 1 308 -4 1686 145 10 27 chr6 7080921 7081218 -175334024 + AluJb SINE Alu 1 292 -20 580 274 60 19 chr6 7081218 7081331 -175333911 - MER58A DNA MER1_type -2289 131 1 302 401 70 13 chr6 7081331 7081419 -175333823 - L2 LINE L2 -708 2606 2488 187 123 26 61 chr6 7082251 7082284 -175332958 + A-rich Low_complexity Low_complexity 2 35 -76 846 141 0 0 chr6 7082284 7082405 -175332837 + FLAM_C SINE Alu 1 121 -12 187 123 26 61 chr6 7082405 7082485 -175332757 + A-rich Low_complexity Low_complexity 35 111 0 2210 97 0 7 chr6 7085041 7085349 -175329893 + AluY SINE Alu 1 306 -5 2085 101 0 33 chr6 7085353 7085659 -175329583 + AluSg SINE Alu 1 296 -14 1652 180 20 3 chr6 7085665 7085965 -175329277 + L1MB3 LINE L1 5815 6119 -64 733 184 73 0 chr6 7085970 7086106 -175329136 + AluJb SINE Alu 150 295 -17 317 150 0 150 chr6 7086106 7086150 -175329092 + L1MB2 LINE L1 6097 6125 -46 2197 71 27 10 chr6 7086150 7086444 -175328798 - AluSx SINE Alu -13 299 1 317 150 0 150 chr6 7086444 7086479 -175328763 + L1MB2 LINE L1 6125 6164 -7 354 301 199 5 chr6 7086866 7087052 -175328190 + MIR SINE MIR 4 225 -37 671 288 142 34 chr6 7087378 7087815 -175327427 - LTR33A LTR ERVL -16 507 24 185 235 98 0 chr6 7088543 7088594 -175326648 - MIR SINE MIR -97 165 110 209 351 0 14 chr6 7088760 7088834 -175326408 + GA-rich Low_complexity Low_complexity 2 74 0 219 232 104 48 chr6 7090425 7090550 -175324692 + MIR SINE MIR 17 148 -60 310 255 106 0 chr6 7090786 7090880 -175324362 + MER5A DNA MER1_type 2 105 -84 875 206 33 0 chr6 7090949 7091129 -175324113 - MER5A DNA MER1_type -3 186 1 2038 123 3 0 chr6 7091432 7091734 -175323508 - AluSx SINE Alu -9 303 1 1867 148 0 3 chr6 7091909 7092207 -175323035 + AluJb SINE Alu 1 297 -15 1314 192 16 4 chr6 7092501 7092775 -175322467 + AluJo SINE Alu 30 306 0 356 277 0 27 chr6 7092828 7092940 -175322302 - L1ME LINE L1 -307 5814 5706 3028 100 5 0 chr6 7093036 7093466 -175321776 + L1PA14 LINE L1 5728 6159 -2 261 302 84 20 chr6 7093503 7093705 -175321537 - L1ME LINE L1 -659 5511 5297 2237 185 49 29 chr6 7094208 7094699 -175320543 + LTR40a LTR ERVL 19 519 0 404 271 235 28 chr6 7094878 7095129 -175320113 + L3 LINE CR1 1252 1554 -23 2031 88 32 0 chr6 7095498 7095783 -175319459 - AluSp SINE Alu -19 294 1 440 213 11 11 chr6 7096176 7096270 -175318972 + MIR SINE MIR 46 139 -69 1982 133 0 0 chr6 7096320 7096620 -175318622 + AluSg SINE Alu 1 300 -10 252 0 0 0 chr6 7096621 7096649 -175318593 + (TA)n Simple_repeat Simple_repeat 2 29 0 1767 156 32 0 chr6 7096650 7096932 -175318310 + AluJb SINE Alu 1 291 -21 990 184 36 31 chr6 7096937 7097160 -175318082 + L1MC1 LINE L1 6107 6330 -3 222 333 90 42 chr6 7098474 7098663 -175316579 - L2 LINE L2 -2 3270 3073 729 142 24 39 chr6 7099008 7099135 -175316107 - FLAM_A SINE Alu -10 132 8 1403 193 11 4 chr6 7099139 7099409 -175315833 - AluJb SINE Alu -40 272 1 185 262 83 48 chr6 7099591 7099675 -175315567 - L2 LINE L2 0 3272 3186 822 104 0 0 chr6 7099966 7100081 -175315161 - AluSg/x SINE Alu -10 302 188 3499 203 31 55 chr6 7100153 7100890 -175314352 - MER45B DNA AcHobo -213 827 112 2020 135 0 0 chr6 7100890 7101186 -175314056 + AluSx SINE Alu 1 296 -16 3499 203 31 55 chr6 7101186 7101296 -175313946 - MER45B DNA AcHobo -928 112 1 187 315 115 105 chr6 7101481 7101786 -175313456 - L2 LINE L2 -5 3267 2960 545 251 87 90 chr6 7101786 7101975 -175313267 - LTR16C LTR ERVL -2 489 300 1664 141 85 0 chr6 7101975 7102245 -175312997 - AluJo SINE Alu -15 297 5 545 251 87 90 chr6 7102245 7102421 -175312821 - LTR16C LTR ERVL -191 300 125 680 232 14 0 chr6 7102592 7102730 -175312512 - MER5A DNA MER1_type 0 189 50 380 286 207 0 chr6 7103080 7103220 -175312022 + LTR33 LTR ERVL 42 210 -311 248 301 82 20 chr6 7103342 7103488 -175311754 + LTR33 LTR ERVL 365 519 -2 191 61 30 0 chr6 7103719 7103752 -175311490 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 573 273 171 6 chr6 7104703 7104879 -175310363 - MIR SINE MIR -16 246 42 624 195 124 12 chr6 7104917 7105086 -175310156 + MER20 DNA MER1_type 32 219 0 1800 124 7 34 chr6 7105573 7105871 -175309371 + AluJb SINE Alu 1 290 -22 197 229 21 104 chr6 7106593 7106689 -175308553 - MER5A DNA MER1_type -93 96 9 2204 101 7 0 chr6 7107416 7107712 -175307530 - AluSx SINE Alu -14 298 1 632 260 13 104 chr6 7107738 7107969 -175307273 - MIR SINE MIR -10 252 43 524 153 0 0 chr6 7108998 7109083 -175306159 - AluJ/FRAM SINE Alu -1 311 227 1267 186 53 4 chr6 7109086 7109312 -175305930 + MLT1A1 LTR MaLR 127 363 -2 314 268 14 0 chr6 7109427 7109498 -175305744 - L2 LINE L2 -4 3309 3238 318 246 144 57 chr6 7110381 7110612 -175304630 - MIR SINE MIR 0 262 4 195 42 0 0 chr6 7110751 7110775 -175304467 + (TTTTA)n Simple_repeat Simple_repeat 2 25 0 1446 137 121 19 chr6 7110799 7111055 -175304187 - AluJo SINE Alu -30 282 1 918 169 0 34 chr6 7111632 7111868 -175303374 - AluJb SINE Alu 0 312 121 212 271 164 21 chr6 7112157 7112297 -175302945 - MIR SINE MIR -12 250 91 1283 215 41 13 chr6 7112307 7112623 -175302619 - MER58B DNA MER1_type -16 325 1 234 261 14 43 chr6 7112721 7112790 -175302452 - MIR3 SINE MIR -134 74 8 519 66 0 0 chr6 7113383 7113459 -175301783 + (TG)n Simple_repeat Simple_repeat 1 76 0 327 302 56 24 chr6 7113861 7113987 -175301255 + L2 LINE L2 3127 3256 -16 269 236 57 89 chr6 7114576 7114699 -175300543 - L2 LINE L2 -16 3297 3179 291 54 0 0 chr6 7116710 7116747 -175298495 + (TG)n Simple_repeat Simple_repeat 1 37 0 1857 192 79 8 chr6 7119267 7119636 -175295606 - MSTD LTR MaLR 0 396 2 270 241 176 0 chr6 7120531 7120639 -175294603 - L2 LINE L2 -645 2669 2543 396 263 168 34 chr6 7121000 7121174 -175294068 + MIR SINE MIR 5 224 -38 2203 129 0 0 chr6 7121174 7121477 -175293765 + AluSx SINE Alu 1 303 -9 396 263 168 34 chr6 7121477 7121522 -175293720 + MIR SINE MIR 224 262 0 21 0 0 0 chr6 7121539 7121560 -175293682 + AT_rich Low_complexity Low_complexity 1 21 0 202 275 132 33 chr6 7122688 7122779 -175292463 + L2 LINE L2 3172 3271 -1 196 75 25 25 chr6 7122810 7122850 -175292392 + (CCCTAA)n Simple_repeat Simple_repeat 1 40 0 235 342 25 0 chr6 7122942 7123021 -175292221 - MIR3 SINE MIR -2 206 126 472 292 30 55 chr6 7123675 7123877 -175291365 - MIR SINE MIR -53 209 13 1118 147 12 0 chr6 7124170 7124340 -175290902 + AluJb SINE Alu 138 309 -3 2529 41 3 0 chr6 7125651 7125945 -175289297 - AluY SINE Alu -16 295 1 1732 180 3 10 chr6 7126065 7126376 -175288866 - AluJo SINE Alu -3 309 1 455 327 210 13 chr6 7126506 7126901 -175288341 - L3 LINE CR1 -20 1557 1085 806 216 72 19 chr6 7126915 7127123 -175288119 - MIR SINE MIR -10 252 34 754 237 17 6 chr6 7127139 7127312 -175287930 - MER5B DNA MER1_type -3 175 1 869 139 0 8 chr6 7127983 7128112 -175287130 - FLAM_C SINE Alu -5 128 1 818 157 6 0 chr6 7129290 7129449 -175285793 + (CA)n Simple_repeat Simple_repeat 2 161 0 288 115 0 0 chr6 7129449 7129501 -175285741 - MER4-int LTR ERV1 -5436 1162 1111 822 201 0 0 chr6 7129502 7129807 -175285435 + (CA)n Simple_repeat Simple_repeat 1 305 0 2211 142 0 0 chr6 7130482 7130793 -175284449 - AluSx SINE Alu -1 311 1 1950 176 3 0 chr6 7131326 7131633 -175283609 + AluJo SINE Alu 1 308 -4 374 272 191 0 chr6 7131854 7132001 -175283241 + MER5A DNA MER1_type 9 183 -6 1867 172 26 0 chr6 7132005 7132308 -175282934 + AluJb SINE Alu 1 311 -1 876 146 8 0 chr6 7132565 7132695 -175282547 + FLAM_C SINE Alu 1 131 -2 394 322 64 0 chr6 7133164 7133335 -175281907 + LTR33 LTR ERVL 2 183 -338 226 208 250 0 chr6 7133422 7133518 -175281724 + LTR33 LTR ERVL 327 446 -75 763 199 0 0 chr6 7133623 7133754 -175281488 - FLAM_A SINE Alu -2 131 1 2207 135 7 0 chr6 7134039 7134343 -175280899 - AluSx SINE Alu -6 306 1 2498 73 0 6 chr6 7134353 7134666 -175280576 - AluY SINE Alu 0 311 1 866 286 87 56 chr6 7134681 7134939 -175280303 + L1MB3 LINE L1 4674 4922 -1224 1969 128 0 35 chr6 7134939 7135252 -175279990 + AluSx SINE Alu 1 302 -10 866 286 87 56 chr6 7135252 7135532 -175279710 + L1MB3 LINE L1 4922 5229 -917 1891 157 26 13 chr6 7135572 7135878 -175279364 - 7SLRNA srpRNA srpRNA -6 314 5 438 282 70 78 chr6 7135897 7136053 -175279189 + L1MB3 LINE L1 5280 5436 -685 1699 137 98 0 chr6 7136053 7136333 -175278909 + AluSc SINE Alu 1 305 0 438 282 70 78 chr6 7136333 7136352 -175278890 + L1MB3 LINE L1 5436 5454 -667 2386 61 0 10 chr6 7136352 7136648 -175278594 + AluY SINE Alu 1 293 -18 438 282 70 78 chr6 7136648 7136856 -175278386 + L1MB3 LINE L1 5454 5662 -459 4402 160 22 66 chr6 7136894 7138158 -175277084 + pTR5 LTR ERV1 6 558 -156 1584 133 27 19 chr6 7138223 7138486 -175276756 + AluSx SINE Alu 10 274 -38 1484 182 16 0 chr6 7138600 7138858 -175276384 - AluJo SINE Alu -50 262 1 284 0 28 0 chr6 7139856 7139892 -175275350 + (TTTTG)n Simple_repeat Simple_repeat 2 38 0 2084 114 41 0 chr6 7140397 7140780 -175274462 + L1MB3 LINE L1 5658 6182 -1 821 144 8 0 chr6 7140786 7140904 -175274338 + FLAM_C SINE Alu 1 119 -24 2537 63 0 3 chr6 7140974 7141277 -175273965 - AluY SINE Alu -9 302 1 8956 45 9 3 chr6 7141331 7143216 -175272026 - L1PA6 LINE L1 0 6154 4250 36 0 0 0 chr6 7143230 7143266 -175271976 + AT_rich Low_complexity Low_complexity 1 36 0 214 253 121 81 chr6 7143856 7143955 -175271287 + MIR SINE MIR 49 151 -111 427 174 0 0 chr6 7143955 7144024 -175271218 + Tigger2 DNA MER2_type 1 69 -2649 * 2422 149 27 18 chr6 7144014 7144456 -175270786 + Tigger2 DNA MER2_type 2273 2718 0 1742 149 53 4 chr6 7144458 7144621 -175270621 - AluJo SINE Alu -17 295 111 369 0 0 0 chr6 7144621 7144662 -175270580 + (TG)n Simple_repeat Simple_repeat 2 42 0 1742 149 53 4 chr6 7144662 7144779 -175270463 - AluJo SINE Alu -201 111 1 335 60 20 0 chr6 7144820 7144870 -175270372 + (TA)n Simple_repeat Simple_repeat 2 52 0 354 264 85 98 chr6 7145702 7145802 -175269440 + MIR SINE MIR 7 107 -155 1845 151 4 0 chr6 7145802 7146073 -175269169 - AluJo SINE Alu -40 272 1 354 264 85 98 chr6 7146073 7146124 -175269118 + MIR SINE MIR 107 157 -105 2372 75 0 0 chr6 7146124 7146426 -175268816 + AluY SINE Alu 3 304 0 354 264 85 98 chr6 7146426 7146518 -175268724 + MIR SINE MIR 157 249 -13 414 273 72 57 chr6 7146567 7146761 -175268481 - MIR SINE MIR 0 262 66 277 258 0 16 chr6 7146972 7147034 -175268208 - L2 LINE L2 -109 3163 3103 1535 148 94 32 chr6 7147115 7147392 -175267850 - AluJb SINE Alu -16 296 3 2179 133 68 0 chr6 7147465 7147848 -175267394 - L1MA9 LINE L1 0 6312 5904 1282 169 110 19 chr6 7147848 7148133 -175267109 + L1 LINE L1 4655 4971 -1175 2318 164 25 70 chr6 7148133 7148616 -175266626 + LOR1b LTR ERV1 1 461 0 1282 169 110 19 chr6 7148616 7148638 -175266604 + L1 LINE L1 4971 4990 -1156 180 0 0 0 chr6 7148801 7148821 -175266421 + (CATAC)n Simple_repeat Simple_repeat 1 20 0 3558 199 259 25 chr6 7149441 7150581 -175264661 + pTR5 LTR ERV1 1033 2438 0 505 277 36 42 chr6 7150584 7150750 -175264492 + MER5A DNA MER1_type 23 187 -2 1700 161 34 38 chr6 7151345 7151470 -175263772 + AluSx SINE Alu 1 125 -187 2255 105 10 10 chr6 7151470 7151776 -175263466 + AluSp SINE Alu 1 306 -7 1700 161 34 38 chr6 7151776 7151942 -175263300 + AluSx SINE Alu 125 291 -21 398 236 264 21 chr6 7151950 7152094 -175263148 + MER5A DNA MER1_type 11 189 0 272 265 174 10 chr6 7152220 7152318 -175262924 + MER5B DNA MER1_type 1 114 -64 1917 116 0 0 chr6 7152326 7152576 -175262666 - AluSx SINE Alu -14 298 49 3851 163 51 30 chr6 7152576 7153345 -175261897 - LTR1 LTR ERV1 0 785 1 358 137 0 7 chr6 7153345 7153414 -175261828 - Alu SINE Alu -250 52 1 240 243 142 95 chr6 7154457 7154526 -175260716 - L2 LINE L2 -2 3270 3206 2279 114 3 0 chr6 7154526 7154824 -175260418 + AluSg SINE Alu 1 299 -11 240 243 142 95 chr6 7154824 7154902 -175260340 - L2 LINE L2 -66 3206 3116 324 341 89 42 chr6 7155146 7155360 -175259882 - L1ME LINE L1 -516 5605 5382 211 314 43 0 chr6 7156056 7156126 -175259116 + MIR SINE MIR 58 130 -78 494 294 177 16 chr6 7156129 7156377 -175258865 - LTR16A LTR ERVL 0 450 163 362 289 70 16 chr6 7156442 7156570 -175258672 + MIR SINE MIR 128 262 0 243 250 0 33 chr6 7156618 7156678 -175258564 - L2 LINE L2 -1 3312 3255 249 290 121 0 chr6 7156771 7156895 -175258347 - L2 LINE L2 -351 2963 2825 1354 221 46 89 chr6 7156925 7157578 -175257664 + L1MC5 LINE L1 7300 7924 -37 1078 210 25 18 chr6 7157874 7158155 -175257087 + L1ME3 LINE L1 5648 5930 -232 447 243 128 7 chr6 7158178 7158326 -175256916 + L1ME3 LINE L1 5989 6154 -8 25 31 0 0 chr6 7158336 7158368 -175256874 + AT_rich Low_complexity Low_complexity 1 32 0 1637 151 55 27 chr6 7158433 7158725 -175256517 - AluJb SINE Alu -8 304 5 234 307 0 0 chr6 7158752 7158827 -175256415 + MER94 DNA DNA 3 77 -57 903 148 0 0 chr6 7158827 7158955 -175256287 + FLAM_C SINE Alu 1 128 -5 386 320 11 55 chr6 7159065 7159246 -175255996 - MER5B DNA MER1_type 0 178 6 496 213 46 19 chr6 7159550 7159658 -175255584 - MER81 DNA DNA -1 113 3 2193 102 58 0 chr6 7160337 7160631 -175254611 + AluSp SINE Alu 1 311 -2 2143 115 0 6 chr6 7160779 7161093 -175254149 + AluSx SINE Alu 1 312 0 279 356 83 8 chr6 7161387 7161519 -175253723 + MIR3 SINE MIR 60 201 -7 542 259 80 4 chr6 7161598 7161845 -175253397 + L1MB3 LINE L1 5263 5523 -641 1996 101 20 33 chr6 7162694 7163000 -175252242 + AluSx SINE Alu 1 302 -10 253 312 32 32 chr6 7163427 7163520 -175251722 - MIR SINE MIR -112 150 58 516 334 34 61 chr6 7164041 7164367 -175250875 + L2 LINE L2 2914 3230 -42 1823 142 3 16 chr6 7164795 7165104 -175250138 - AluJo SINE Alu -7 305 1 1100 146 16 5 chr6 7165336 7165521 -175249721 + MER5A DNA MER1_type 3 189 0 528 286 10 46 chr6 7165533 7165729 -175249513 + L2 LINE L2 3124 3312 -1 1979 109 0 7 chr6 7166428 7166713 -175248529 + AluSx SINE Alu 7 289 -23 514 191 191 0 chr6 7169312 7169422 -175245820 + FLAM_C SINE Alu 2 132 -11 23 0 0 0 chr6 7169424 7169447 -175245795 + AT_rich Low_complexity Low_complexity 1 23 0 287 256 80 16 chr6 7169562 7169687 -175245555 + L2 LINE L2 2148 2280 -1034 1517 173 35 7 chr6 7170056 7170339 -175244903 + AluJo SINE Alu 1 291 -21 180 0 0 0 chr6 7170345 7170365 -175244877 + (CAAA)n Simple_repeat Simple_repeat 1 20 0 1065 169 56 28 chr6 7170832 7171045 -175244197 + MER20 DNA MER1_type 1 219 0 2403 63 0 0 chr6 7171226 7171525 -175243717 - AluY SINE Alu -12 299 1 2180 100 0 0 chr6 7172022 7172322 -175242920 + AluSx SINE Alu 1 300 -12 1700 157 29 0 chr6 7173124 7173398 -175241844 + AluJb SINE Alu 1 282 -30 1890 132 0 11 chr6 7173599 7173886 -175241356 + AluSx SINE Alu 11 294 -18 1634 136 3 103 chr6 7174241 7174572 -175240670 + AluJb SINE Alu 5 302 -10 3437 183 27 0 chr6 7174767 7175397 -175239845 + L1MB3 LINE L1 5537 6183 0 792 107 0 0 chr6 7176268 7176371 -175238871 + AluJb SINE Alu 3 105 -207 1707 202 44 41 chr6 7176594 7176981 -175238261 - MLT1B LTR MaLR -2 388 1 417 315 43 16 chr6 7177015 7177199 -175238043 - MIR SINE MIR -46 216 28 2034 126 0 16 chr6 7177622 7177939 -175237303 - AluJb SINE Alu 0 312 1 272 250 0 0 chr6 7177965 7178041 -175237201 + A-rich Low_complexity Low_complexity 1 76 0 436 252 10 19 chr6 7178724 7178827 -175236415 + MER81 DNA DNA 11 112 -2 864 246 61 36 chr6 7179860 7180137 -175235105 + L1ME2 LINE L1 5758 6041 -123 840 211 0 0 chr6 7180139 7180300 -175234942 + FRAM SINE Alu 1 160 -16 354 216 82 21 chr6 7180300 7180397 -175234845 + L1ME2 LINE L1 6034 6136 -28 1721 167 0 26 chr6 7180410 7180715 -175234527 - AluSx SINE Alu -15 297 1 1638 164 3 7 chr6 7180762 7181048 -175234194 + AluJb SINE Alu 3 287 -25 209 58 77 0 chr6 7181048 7181100 -175234142 + (TA)n Simple_repeat Simple_repeat 1 56 0 312 361 19 0 chr6 7181134 7181242 -175234000 + L1MC4 LINE L1 6617 6726 -1316 212 271 0 0 chr6 7181365 7181413 -175233829 - L2 LINE L2 -35 3278 3231 347 338 136 49 chr6 7181743 7182237 -175233005 - L2 LINE L2 -534 2780 2244 199 296 0 19 chr6 7182363 7182417 -175232825 + MIR3 SINE MIR 13 65 -143 833 126 8 0 chr6 7182797 7182916 -175232326 + AluJb SINE Alu 5 124 -188 364 215 161 11 chr6 7182921 7183014 -175232228 - MER45 DNA AcHobo -1474 107 1 560 322 70 13 chr6 7183042 7183272 -175231970 + MIR SINE MIR 12 254 -8 335 328 107 0 chr6 7184433 7184564 -175230678 + LTR67 LTR ERVL 40 184 -373 2018 114 17 0 chr6 7185227 7185526 -175229716 + AluSg SINE Alu 1 304 -6 1224 206 24 14 chr6 7185555 7185846 -175229396 - AluJo SINE Alu -17 295 2 207 0 0 0 chr6 7185910 7185933 -175229309 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 1903 88 84 0 chr6 7185935 7186208 -175229034 - AluSg SINE Alu -14 296 1 382 252 91 99 chr6 7186211 7186563 -175228679 + L1M4 LINE L1 3068 3402 -2744 1624 167 10 23 chr6 7186587 7186867 -175228375 + AluJb SINE Alu 1 278 -34 183 42 0 0 chr6 7186867 7186891 -175228351 + (CA)n Simple_repeat Simple_repeat 1 24 0 1624 167 10 23 chr6 7186891 7186915 -175228327 + AluJb SINE Alu 278 301 -11 2165 104 0 0 chr6 7186925 7187262 -175227980 + AluSx SINE Alu 1 337 0 1746 150 14 10 chr6 7187499 7187792 -175227450 - AluSx SINE Alu -18 294 1 338 362 107 31 chr6 7187804 7188000 -175227242 + L1MC4 LINE L1 6493 6703 -1339 283 190 0 35 chr6 7188002 7188060 -175227182 + L1MC5 LINE L1 6790 6845 -1116 1655 165 3 10 chr6 7188060 7188195 -175227047 + AluJo SINE Alu 1 135 -177 1596 136 0 4 chr6 7188195 7188445 -175226797 + AluSx SINE Alu 50 298 -14 1655 165 3 10 chr6 7188445 7188600 -175226642 + AluJo SINE Alu 135 289 -23 27 29 0 0 chr6 7188600 7188634 -175226608 + AT_rich Low_complexity Low_complexity 1 34 0 2057 118 3 3 chr6 7188641 7188945 -175226297 + AluSc SINE Alu 1 304 -5 312 194 0 133 chr6 7188946 7189044 -175226198 + L1MC4 LINE L1 6837 7002 -1040 2158 113 0 10 chr6 7189046 7189357 -175225885 + AluSx SINE Alu 1 308 -4 514 202 54 64 chr6 7189440 7189643 -175225599 + L1MC5 LINE L1 6959 7159 -802 1622 173 11 14 chr6 7189644 7189956 -175225286 + AluJo SINE Alu 1 311 0 521 158 0 98 chr6 7189968 7190101 -175225141 + L1MC5 LINE L1 7145 7264 -697 424 221 44 18 chr6 7190098 7190211 -175225031 - L1MC4a LINE L1 -422 7386 7271 * 2056 107 0 10 chr6 7190258 7190568 -175224674 + AluSc SINE Alu 1 307 -2 432 296 124 5 chr6 7190695 7190881 -175224361 + LTR67 LTR ERVL 350 557 0 327 25 0 0 chr6 7190901 7190941 -175224301 + (TG)n Simple_repeat Simple_repeat 1 40 0 1264 164 4 13 chr6 7191215 7191440 -175223802 + AluJo SINE Alu 1 223 -89 229 287 23 0 chr6 7191575 7191662 -175223580 - L1MC4 LINE L1 -1340 6702 6614 302 309 24 0 chr6 7191675 7191759 -175223483 - L1MC4 LINE L1 -1342 6700 6615 1663 155 7 4 chr6 7192881 7193159 -175222083 + AluJo SINE Alu 12 290 -22 24 0 0 0 chr6 7193159 7193183 -175222059 + AT_rich Low_complexity Low_complexity 1 24 0 3164 62 5 0 chr6 7193468 7193869 -175221373 - L1PA8A LINE L1 -27 6104 5702 22 0 0 0 chr6 7194135 7194157 -175221085 + AT_rich Low_complexity Low_complexity 1 22 0 2051 110 7 0 chr6 7194395 7194695 -175220547 + AluY SINE Alu 1 302 -9 2316 60 0 23 chr6 7195299 7195600 -175219642 + AluY SINE Alu 1 294 -17 182 318 143 0 chr6 7196034 7196097 -175219145 - L2 LINE L2 -3 3310 3239 54 73 0 0 chr6 7196162 7196272 -175218970 + AT_rich Low_complexity Low_complexity 1 110 0 1611 156 4 7 chr6 7196293 7196568 -175218674 - AluJo SINE Alu -18 294 21 2291 100 3 0 chr6 7196626 7196935 -175218307 - AluSx SINE Alu -2 310 1 608 202 0 0 chr6 7197302 7197401 -175217841 - AluJ/FLAM SINE Alu -212 100 2 659 237 31 36 chr6 7197720 7197936 -175217306 + MIR SINE MIR 46 261 -1 1978 118 37 0 chr6 7197941 7198238 -175217004 - AluSx SINE Alu -4 308 1 602 328 172 12 chr6 7198279 7198867 -175216375 + L2 LINE L2 1965 2646 -668 867 113 0 0 chr6 7199293 7199408 -175215834 + AluSq/x SINE Alu 10 124 -189 3749 156 30 66 chr6 7199409 7199916 -175215326 + L1MB8 LINE L1 5308 5832 -346 1903 99 102 0 chr6 7199916 7200199 -175215043 + AluSx SINE Alu 1 312 0 3749 156 30 66 chr6 7200199 7200291 -175214951 + L1MB8 LINE L1 5832 5926 -252 1792 150 20 3 chr6 7200291 7200585 -175214657 - AluJb SINE Alu -13 299 1 3749 156 30 66 chr6 7200585 7200791 -175214451 + L1MB8 LINE L1 5926 6085 -93 207 0 0 0 chr6 7201022 7201045 -175214197 + (TTA)n Simple_repeat Simple_repeat 2 24 0 821 120 8 0 chr6 7201059 7201176 -175214066 - FLAM_C SINE Alu -15 118 1 765 289 125 14 chr6 7201331 7201698 -175213544 + MLT1I LTR MaLR 1 408 -1 346 322 29 47 chr6 7201700 7201871 -175213371 - MIR SINE MIR -16 246 79 362 237 0 13 chr6 7202080 7202156 -175213086 + Tigger5 DNA MER2_type 1 75 -2248 258 192 19 0 chr6 7202173 7202225 -175213017 - Tigger5 DNA MER2_type -20 2303 2251 1795 155 14 3 chr6 7202239 7202536 -175212706 + AluJb SINE Alu 2 301 -11 426 167 0 0 chr6 7202538 7202604 -175212638 + Tigger5 DNA MER2_type 2258 2323 0 255 240 154 23 chr6 7202760 7202910 -175212332 + MIR SINE MIR 23 201 -61 1400 177 108 63 chr6 7202910 7203289 -175211953 + MSTD LTR MaLR 1 396 0 255 240 154 23 chr6 7203289 7203308 -175211934 + MIR SINE MIR 201 216 -46 270 249 13 81 chr6 7203940 7204061 -175211181 - MIR SINE MIR -84 124 20 1411 227 31 68 chr6 7204070 7204380 -175210862 + MER58B DNA MER1_type 3 300 -2120 849 158 0 23 chr6 7204380 7204513 -175210729 - FLAM_C SINE Alu -3 130 1 1411 227 31 68 chr6 7204513 7204554 -175210688 + MER58B DNA MER1_type 300 341 0 232 267 0 17 chr6 7204584 7204644 -175210598 - MIR SINE MIR -122 140 82 485 266 5 65 chr6 7205434 7205618 -175209624 + L1MC4a LINE L1 7636 7808 0 2001 139 0 0 chr6 7205619 7205921 -175209321 + AluSx SINE Alu 1 302 -10 850 225 5 27 chr6 7205925 7206112 -175209130 + AluJb SINE Alu 130 312 0 411 169 13 0 chr6 7206117 7206194 -175209048 + MER116 DNA Mariner 2 79 -1 2207 82 0 0 chr6 7206811 7207091 -175208151 + AluSp SINE Alu 1 280 -33 393 75 0 0 chr6 7207097 7207150 -175208092 + (GGGA)n Simple_repeat Simple_repeat 4 56 0 1054 211 30 35 chr6 7207580 7207686 -175207556 - MLT1C LTR MaLR -16 451 346 592 229 91 108 chr6 7207686 7208092 -175207150 - MER93a LTR ERV1 -3 399 1 1054 211 30 35 chr6 7208092 7208217 -175207025 - MLT1C LTR MaLR -121 346 221 1017 112 0 0 chr6 7208230 7208373 -175206869 - FLAM_C SINE Alu 0 143 1 1693 154 6 26 chr6 7208375 7208687 -175206555 - AluJb SINE Alu -6 306 1 1326 133 43 0 chr6 7208687 7208898 -175206344 - MLT1C LTR MaLR -233 234 15 247 392 8 0 chr6 7209158 7209283 -175205959 + MIR3 SINE MIR 30 155 -53 183 148 0 0 chr6 7210456 7210483 -175204759 - MIR SINE MIR -99 109 83 221 284 153 9 chr6 7210547 7210693 -175204549 + MIR SINE MIR 5 140 -68 739 187 0 8 chr6 7211530 7211664 -175203578 + FLAM_C SINE Alu 1 133 0 318 284 14 85 chr6 7211839 7211928 -175203314 + L1MB3 LINE L1 5562 5639 -482 848 219 0 0 chr6 7211928 7212097 -175203145 - L1PA16 LINE L1 -17 6149 5981 318 284 14 85 chr6 7212097 7212148 -175203094 + L1MB3 LINE L1 5639 5692 -429 293 240 10 39 chr6 7212184 7212288 -175202954 + L1ME4a LINE L1 5990 6090 -31 2457 162 18 16 chr6 7212288 7212738 -175202504 + L1MB3 LINE L1 5733 6183 0 1949 116 24 10 chr6 7212813 7213105 -175202137 + AluSx SINE Alu 1 296 -16 1574 150 14 31 chr6 7213569 7213855 -175201387 + AluJo SINE Alu 1 281 -31 1584 174 9 43 chr6 7213856 7214178 -175201064 + AluJo SINE Alu 1 311 -1 2164 119 0 0 chr6 7214206 7214517 -175200725 + AluSx SINE Alu 1 311 -1 1513 140 17 0 chr6 7214517 7214753 -175200489 - L1MB2 LINE L1 -251 5920 5681 229 240 200 30 chr6 7214845 7214945 -175200297 - MIR3 SINE MIR -3 205 89 1350 133 195 8 chr6 7216106 7216362 -175198880 + AluSg1 SINE Alu 1 304 -5 1534 159 19 48 chr6 7216382 7216696 -175198546 + AluJb SINE Alu 6 310 -2 303 203 0 0 chr6 7216711 7216780 -175198462 + GA-rich Low_complexity Low_complexity 4 72 0 543 148 218 0 chr6 7216790 7216891 -175198351 + AluJb SINE Alu 2 124 -188 22 35 0 0 chr6 7217095 7217124 -175198118 + AT_rich Low_complexity Low_complexity 1 29 0 2058 120 7 3 chr6 7217495 7217794 -175197448 + AluSq SINE Alu 1 300 -13 1617 131 3 125 chr6 7218377 7218721 -175196521 + AluJo SINE Alu 1 302 0 204 188 0 0 chr6 7218729 7218761 -175196481 + (TG)n Simple_repeat Simple_repeat 1 32 0 1433 158 0 0 chr6 7218922 7219143 -175196099 - AluJo SINE Alu -91 221 1 622 248 90 85 chr6 7219143 7219579 -175195663 + MLT1E1 LTR MaLR 11 518 -136 353 141 3 7 chr6 7219579 7219636 -175195606 + Alu SINE Alu 244 285 -17 2172 105 0 10 chr6 7219636 7219942 -175195300 + AluSx SINE Alu 1 303 -9 353 141 3 7 chr6 7219942 7219957 -175195285 + Alu SINE Alu 285 299 -3 846 143 0 0 chr6 7219957 7220083 -175195159 + FLAM_C SINE Alu 5 130 -3 712 235 34 0 chr6 7220115 7220264 -175194978 + MLT1E1 LTR MaLR 494 647 -7 461 261 71 69 chr6 7220281 7220573 -175194669 - L1MB2 LINE L1 -449 5672 5378 342 67 0 0 chr6 7220573 7220618 -175194624 + (TCTA)n Simple_repeat Simple_repeat 1 45 0 461 261 71 69 chr6 7220618 7220646 -175194596 - L1MB2 LINE L1 -743 5378 5352 1844 110 0 0 chr6 7220653 7220916 -175194326 - AluSq SINE Alu -8 305 43 2164 110 3 0 chr6 7220945 7221253 -175193989 - AluSx SINE Alu -3 309 1 273 254 61 43 chr6 7221339 7221524 -175193718 + L1MC/D LINE L1 5723 5829 -530 671 188 8 16 chr6 7221894 7222135 -175193107 + AluJ SINE Alu 2 133 -169 386 338 33 7 chr6 7222269 7222420 -175192822 + L2 LINE L2 3147 3301 -12 346 308 62 15 chr6 7222470 7222600 -175192642 + L2 LINE L2 2910 3045 -227 2132 107 3 0 chr6 7222621 7222912 -175192330 + AluSg SINE Alu 1 292 -18 22419 99 17 13 chr6 7223050 7226287 -175188955 + L1PA6 LINE L1 11 3261 -2885 7199 50 6 2 chr6 7226287 7227677 -175187565 + L1PA6 LINE L1 4762 6154 0 217 331 123 13 chr6 7227855 7228009 -175187233 + L2 LINE L2 3102 3272 0 917 179 6 0 chr6 7228659 7228827 -175186415 + AluJ SINE Alu 134 302 -10 2126 109 0 26 chr6 7228853 7229165 -175186077 + AluSq SINE Alu 1 304 -9 1670 172 34 0 chr6 7229935 7230231 -175185011 + AluJb SINE Alu 1 306 -6 207 69 0 0 chr6 7230807 7230836 -175184406 + (TC)n Simple_repeat Simple_repeat 2 30 0 198 0 0 0 chr6 7230951 7230973 -175184269 + (CA)n Simple_repeat Simple_repeat 2 23 0 1813 162 0 7 chr6 7231104 7231401 -175183841 + AluJo SINE Alu 1 295 -17 2100 88 0 11 chr6 7231440 7231724 -175183518 - AluSx SINE Alu -17 295 15 805 185 0 0 chr6 7231784 7231914 -175183328 + AluJo SINE Alu 5 134 -178 587 209 124 0 chr6 7231981 7232110 -175183132 - MIR SINE MIR 0 262 118 759 122 0 0 chr6 7232127 7232234 -175183008 + FRAM SINE Alu 65 171 -5 333 304 0 0 chr6 7232235 7232314 -175182928 - MIR SINE MIR -182 80 2 1424 173 24 34 chr6 7233117 7233412 -175181830 - AluJb SINE Alu -9 303 12 195 179 0 26 chr6 7233525 7233564 -175181678 + L2 LINE L2 3276 3313 0 540 304 207 52 chr6 7233592 7233629 -175181613 - L2 LINE L2 -3 3269 3239 2280 157 171 28 chr6 7233629 7234125 -175181117 + MLT1F1 LTR MaLR 1 567 0 540 304 207 52 chr6 7234125 7235283 -175179959 - L2 LINE L2 -33 3239 1873 2229 94 0 0 chr6 7235307 7235604 -175179638 - AluY SINE Alu -14 297 1 2308 104 0 0 chr6 7235642 7235951 -175179291 - AluSg SINE Alu -1 309 1 431 269 134 7 chr6 7236359 7236508 -175178734 + MIR SINE MIR 75 242 -20 187 211 18 88 chr6 7236478 7236535 -175178707 + L2 LINE L2 3217 3269 -3 * 201 39 0 0 chr6 7236612 7236638 -175178604 + (TG)n Simple_repeat Simple_repeat 2 27 0 271 212 200 0 chr6 7236641 7236726 -175178516 - U13 snRNA snRNA 0 104 3 1971 84 22 0 chr6 7236848 7237148 -175178094 - AluSc SINE Alu 0 306 1 198 0 0 0 chr6 7237148 7237170 -175178072 + (TTTTA)n Simple_repeat Simple_repeat 1 22 0 1693 149 0 24 chr6 7237170 7237459 -175177783 - AluJo SINE Alu -30 282 1 195 218 55 18 chr6 7237492 7237547 -175177695 + L2 LINE L2 3216 3272 0 264 272 88 40 chr6 7238584 7238709 -175176533 - MIR SINE MIR -61 147 17 231 61 0 0 chr6 7239709 7239742 -175175500 + (CA)n Simple_repeat Simple_repeat 2 34 0 2007 98 23 10 chr6 7239797 7240103 -175175139 + AluSx SINE Alu 2 311 -1 880 104 0 0 chr6 7240470 7240585 -175174657 + FLAM_C SINE Alu 4 118 -15 2171 100 3 0 chr6 7240874 7241175 -175174067 + AluSx SINE Alu 1 302 -10 638 246 172 15 chr6 7241825 7242028 -175173214 + MIR SINE MIR 28 262 0 207 0 0 0 chr6 7242201 7242224 -175173018 + (A)n Simple_repeat Simple_repeat 1 23 0 219 69 0 0 chr6 7242616 7242645 -175172597 + (GA)n Simple_repeat Simple_repeat 2 30 0 1109 129 0 12 chr6 7242753 7242923 -175172319 + AluSg/x SINE Alu 121 288 -24 700 189 115 80 chr6 7243854 7244166 -175171076 - L1MC5 LINE L1 -30 7931 7609 425 316 32 48 chr6 7244439 7244626 -175170616 + MIR3 SINE MIR 21 204 -4 333 344 55 12 chr6 7244775 7244938 -175170304 + L2 LINE L2 3144 3313 0 227 269 13 77 chr6 7244947 7245025 -175170217 + MIR SINE MIR 134 206 -56 1604 179 10 23 chr6 7245151 7245459 -175169783 - AluJo SINE Alu -8 304 1 2219 94 0 3 chr6 7245510 7245809 -175169433 - AluSp SINE Alu -15 298 1 342 200 19 150 chr6 7246324 7246484 -175168758 - MER103 DNA DNA -11 155 17 355 133 51 43 chr6 7246486 7246612 -175168630 - HsTC2 DNA Tc2 -44 1854 9 21 0 0 0 chr6 7247890 7247911 -175167331 + GC_rich Low_complexity Low_complexity 1 21 0 34 55 0 0 chr6 7248035 7248090 -175167152 + GC_rich Low_complexity Low_complexity 1 55 0 189 107 0 0 chr6 7248632 7248660 -175166582 + (CGGGGG)n Simple_repeat Simple_repeat 1 28 0 192 77 0 0 chr6 7248773 7248799 -175166443 + (GGA)n Simple_repeat Simple_repeat 1 26 0 2212 98 0 0 chr6 7250136 7250442 -175164800 + AluY SINE Alu 1 306 -5 740 161 0 58 chr6 7250490 7250627 -175164615 - FLAM_C SINE Alu -13 130 2 335 137 0 0 chr6 7251433 7251484 -175163758 - FAM SINE Alu -10 165 115 2308 94 3 0 chr6 7251484 7251792 -175163450 - AluSp SINE Alu -4 309 1 2034 123 0 7 chr6 7251834 7252142 -175163100 + AluSx SINE Alu 1 306 -6 2357 61 0 0 chr6 7252191 7252487 -175162755 + AluY SINE Alu 1 296 -15 200 216 0 0 chr6 7252773 7252810 -175162432 + GA-rich Low_complexity Low_complexity 2 38 0 636 174 41 8 chr6 7253678 7253799 -175161443 + FLAM_C SINE Alu 1 125 -8 44 63 0 0 chr6 7253799 7253878 -175161364 + AT_rich Low_complexity Low_complexity 1 79 0 239 345 17 17 chr6 7254004 7254063 -175161179 + MER5A DNA MER1_type 68 126 -63 2226 92 0 7 chr6 7254063 7254366 -175160876 - AluSc SINE Alu -8 301 1 239 345 17 17 chr6 7254366 7254425 -175160817 + MER5A DNA MER1_type 125 186 -3 601 144 0 0 chr6 7255484 7255596 -175159646 + AluSg/x SINE Alu 195 306 0 501 103 4 0 chr6 7255596 7255673 -175159569 - L1MB2 LINE L1 -32 6136 6058 2052 114 0 0 chr6 7255941 7256231 -175159011 + AluSg SINE Alu 1 290 -20 242 208 0 0 chr6 7256231 7256279 -175158963 + AluJ/monomer SINE Alu 1 48 -252 2072 131 0 0 chr6 7256320 7256625 -175158617 - AluSx SINE Alu -7 305 1 1940 118 0 14 chr6 7257478 7257805 -175157437 - AluSx SINE Alu 0 323 1 767 155 0 0 chr6 7258175 7258291 -175156951 + FLAM_C SINE Alu 1 116 -17 352 171 0 85 chr6 7259394 7259476 -175155766 + Charlie7 DNA MER1_type 37 111 -2501 816 170 61 109 chr6 7259479 7259547 -175155695 - L1MB4 LINE L1 -2 6178 6108 2270 85 0 3 chr6 7259547 7259842 -175155400 - AluSq SINE Alu -19 294 1 816 170 61 109 chr6 7259842 7260020 -175155222 - L1MB4 LINE L1 -72 6108 5944 761 183 0 0 chr6 7260033 7260148 -175155094 - AluSq/x SINE Alu -197 116 2 1421 135 35 45 chr6 7260149 7260437 -175154805 - L1MB4 LINE L1 -564 5610 5326 1865 150 3 0 chr6 7260441 7260748 -175154494 + AluSx SINE Alu 1 308 -4 189 107 0 0 chr6 7260748 7260776 -175154466 + (GGAA)n Simple_repeat Simple_repeat 1 28 0 254 222 30 12 chr6 7261146 7261221 -175154021 + AluS SINE Alu 1 61 -240 1209 117 15 5 chr6 7261322 7261527 -175153715 + AluY SINE Alu 82 288 -23 2417 55 0 0 chr6 7261645 7261955 -175153287 - AluY SINE Alu -1 310 1 2407 71 0 7 chr6 7262028 7262337 -175152905 - AluSg SINE Alu -3 307 1 2291 71 0 16 chr6 7262522 7262833 -175152409 + AluY SINE Alu 1 306 -5 2245 92 0 3 chr6 7262990 7263295 -175151947 + AluSq SINE Alu 1 304 -9 26 69 0 14 chr6 7263335 7263352 -175151890 + AT_rich Low_complexity Low_complexity 1 17 -54 2116 104 0 0 chr6 7263352 7263639 -175151603 - AluSg SINE Alu -23 287 1 26 69 0 14 chr6 7263639 7263693 -175151549 + AT_rich Low_complexity Low_complexity 17 71 0 1653 129 10 34 chr6 7263773 7264067 -175151175 - AluJo SINE Alu -3 309 23 1670 129 86 4 chr6 7264086 7264364 -175150878 - AluSq SINE Alu -12 301 1 896 158 0 0 chr6 7264902 7265035 -175150207 + FLAM_C SINE Alu 1 133 0 1994 160 0 0 chr6 7265331 7265638 -175149604 - AluJb SINE Alu -5 307 1 1951 120 6 19 chr6 7265658 7265974 -175149268 - AluSq SINE Alu 0 313 2 916 294 59 15 chr6 7265984 7266392 -175148850 - L1ME3A LINE L1 -220 5950 5525 2198 109 0 0 chr6 7266398 7266702 -175148540 - AluSx SINE Alu -8 304 1 548 162 45 78 chr6 7266730 7266794 -175148448 - L1MA9 LINE L1 0 6312 6247 2036 134 0 0 chr6 7266794 7267099 -175148143 + AluJb SINE Alu 1 305 -7 548 162 45 78 chr6 7267099 7267188 -175148054 - L1MA9 LINE L1 -65 6247 6164 1493 205 7 13 chr6 7267206 7267504 -175147738 + AluJo SINE Alu 1 296 -16 632 242 85 42 chr6 7267508 7267768 -175147474 - L1ME3A LINE L1 -633 5531 5261 254 159 14 43 chr6 7267830 7267899 -175147343 - L1ME3A LINE L1 -896 5250 5184 2312 85 3 0 chr6 7267950 7268256 -175146986 - AluSx SINE Alu -5 307 1 705 285 79 65 chr6 7268256 7268888 -175146354 - L1ME3A LINE L1 -976 5170 4530 676 210 46 149 chr6 7268898 7269160 -175146082 + MIR SINE MIR 2 236 -26 2138 116 6 61 chr6 7269260 7269606 -175145636 - MER7A DNA MER2_type 0 346 22 25 31 0 0 chr6 7269711 7269743 -175145499 + AT_rich Low_complexity Low_complexity 1 32 0 1915 120 0 3 chr6 7269888 7270201 -175145041 + AluSq SINE Alu 1 312 0 288 232 0 14 chr6 7270580 7270649 -175144593 + FLAM_A SINE Alu 66 133 0 261 83 0 0 chr6 7271133 7271169 -175144073 + (T)n Simple_repeat Simple_repeat 1 36 0 2182 88 3 3 chr6 7271404 7271698 -175143544 - AluSc SINE Alu -15 294 1 1004 103 0 0 chr6 7271698 7271834 -175143408 - AluSq/x SINE Alu -176 136 1 745 162 0 0 chr6 7271876 7271993 -175143249 + FLAM_A SINE Alu 1 117 -16 334 0 0 42 chr6 7272001 7272049 -175143193 + (TAAA)n Simple_repeat Simple_repeat 2 47 0 482 210 259 19 chr6 7272049 7272206 -175143036 - MIR SINE MIR -5 257 62 382 283 38 38 chr6 7272547 7272706 -175142536 - MIR SINE MIR -25 237 79 2206 93 0 0 chr6 7273203 7273494 -175141748 - AluY SINE Alu -20 291 1 342 306 146 7 chr6 7273521 7273665 -175141577 - MIR3 SINE MIR -15 193 30 740 121 129 0 chr6 7274334 7274450 -175140792 + FLAM_A SINE Alu 1 131 -2 535 136 0 0 chr6 7274507 7274595 -175140647 - MER2 DNA MER2_type -135 210 123 909 141 0 15 chr6 7274596 7274731 -175140511 + FLAM_C SINE Alu 1 133 0 731 212 8 0 chr6 7274777 7274909 -175140333 - MER2 DNA MER2_type -210 135 3 320 236 22 0 chr6 7275001 7275090 -175140152 - L1ME3A LINE L1 -1 6169 6079 464 233 117 31 chr6 7275093 7275256 -175139986 + MIR SINE MIR 25 201 -61 2459 58 0 7 chr6 7275324 7275633 -175139609 + AluY SINE Alu 2 308 -3 775 148 0 16 chr6 7275843 7275965 -175139277 + FLAM_C SINE Alu 3 122 -11 493 189 13 26 chr6 7275986 7276139 -175139103 + GA-rich Low_complexity Low_complexity 3 153 0 2157 115 0 0 chr6 7276175 7276480 -175138762 + AluSx SINE Alu 1 305 -7 1848 122 29 0 chr6 7276773 7277052 -175138190 - AluSx SINE Alu -25 287 1 1323 101 0 0 chr6 7277057 7277255 -175137987 - L1MA5 LINE L1 -2 6298 6101 310 187 67 13 chr6 7277266 7277341 -175137901 - L1MA5A LINE L1 -172 6125 6047 2221 88 13 0 chr6 7277810 7278118 -175137124 + AluSx SINE Alu 1 312 0 1176 177 72 16 chr6 7278322 7278571 -175136671 + AluJo SINE Alu 33 295 -17 2258 97 3 0 chr6 7278645 7278956 -175136286 + AluSx SINE Alu 1 312 0 435 108 14 14 chr6 7278956 7279030 -175136212 + Charlie1 DNA MER1_type 2688 2761 0 242 347 42 28 chr6 7279190 7279334 -175135908 - L2 LINE L2 -18 3295 3150 481 324 77 6 chr6 7279394 7279564 -175135678 - MIR SINE MIR -26 236 55 2080 111 10 3 chr6 7280347 7280653 -175134589 - AluSx SINE Alu -4 308 1 2207 86 0 0 chr6 7280953 7281245 -175133997 + AluY SINE Alu 1 292 -19 2182 98 0 0 chr6 7281258 7281553 -175133689 + AluSx SINE Alu 3 297 -15 309 211 178 0 chr6 7282192 7282282 -175132960 + MIR SINE MIR 87 192 -70 2266 73 10 0 chr6 7282427 7282727 -175132515 + AluSp SINE Alu 1 303 -10 340 249 24 133 chr6 7283191 7283356 -175131886 + MIR3 SINE MIR 33 179 -29 4352 139 16 22 chr6 7285035 7285803 -175129439 - L1MB3 LINE L1 -7 6176 5414 439 281 62 65 chr6 7285807 7286113 -175129129 - L1M4 LINE L1 -1381 4765 4461 380 253 0 12 chr6 7286267 7286350 -175128892 + MIR SINE MIR 20 101 -161 283 334 30 30 chr6 7286431 7286730 -175128512 - L1M4 LINE L1 -1898 4248 3950 1290 117 20 101 chr6 7287222 7287386 -175127856 + MER30 DNA MER1_type 3 143 -87 2150 74 7 3 chr6 7287386 7287704 -175127538 - AluSx SINE Alu 0 319 1 1290 117 20 101 chr6 7287704 7287786 -175127456 + MER30 DNA MER1_type 143 230 0 21 0 0 0 chr6 7287834 7287855 -175127387 + AT_rich Low_complexity Low_complexity 1 21 0 892 131 0 21 chr6 7287884 7288029 -175127213 + AluJo SINE Alu 1 142 -170 2123 103 0 19 chr6 7288032 7288344 -175126898 + AluSx SINE Alu 6 311 -1 259 249 83 55 chr6 7288350 7288567 -175126675 - L1ME LINE L1 -218 5903 5681 191 88 29 0 chr6 7288641 7288675 -175126567 + (TTTA)n Simple_repeat Simple_repeat 2 36 0 1782 80 13 0 chr6 7288685 7288924 -175126318 - AluSp SINE Alu -58 255 14 2502 65 0 0 chr6 7288939 7289249 -175125993 - AluY SINE Alu -1 310 1 336 153 0 19 chr6 7289263 7289328 -175125914 + Alu SINE Alu 1 47 -254 273 236 149 63 chr6 7289331 7289505 -175125737 - L1ME LINE L1 -656 5465 5277 524 285 69 69 chr6 7289506 7289655 -175125587 + MIR SINE MIR 3 151 -111 2216 107 0 0 chr6 7289655 7289953 -175125289 + AluSx SINE Alu 1 298 -14 1908 109 39 3 chr6 7289956 7290240 -175125002 + AluSc SINE Alu 1 294 -15 524 285 69 69 chr6 7290240 7290332 -175124910 + MIR SINE MIR 152 248 -14 415 287 137 92 chr6 7290371 7290552 -175124690 - L1ME LINE L1 -912 5234 5063 2334 83 0 10 chr6 7290552 7290865 -175124377 - AluSq SINE Alu -3 310 1 415 287 137 92 chr6 7290865 7290928 -175124314 - L1ME LINE L1 -1083 5063 5004 1691 167 3 7 chr6 7290928 7291091 -175124151 - AluJb SINE Alu -20 292 130 348 24 0 0 chr6 7291091 7291132 -175124110 + (TTG)n Simple_repeat Simple_repeat 1 41 0 1681 135 0 19 chr6 7291132 7291392 -175123850 - AluSx SINE Alu -31 281 27 1691 167 3 7 chr6 7291392 7291520 -175123722 - AluJb SINE Alu -180 132 1 2215 103 7 3 chr6 7291529 7291839 -175123403 - AluSq SINE Alu -2 311 1 415 287 137 92 chr6 7291839 7292008 -175123234 - L1ME LINE L1 -1149 4997 4791 379 323 65 8 chr6 7292192 7292316 -175122926 + MIR3 SINE MIR 14 144 -64 2012 115 0 35 chr6 7292429 7292742 -175122500 + AluSx SINE Alu 1 302 -10 1432 141 33 21 chr6 7292841 7293083 -175122159 - L1PB4 LINE L1 0 6156 5912 21 0 0 0 chr6 7293090 7293111 -175122131 + AT_rich Low_complexity Low_complexity 1 21 0 1743 175 0 0 chr6 7293119 7293405 -175121837 + AluJo SINE Alu 6 291 -21 193 146 42 0 chr6 7293429 7293477 -175121765 + (TA)n Simple_repeat Simple_repeat 2 51 0 200 252 65 9 chr6 7293478 7293585 -175121657 + (TATATG)n Simple_repeat Simple_repeat 4 116 0 230 150 25 25 chr6 7293599 7293679 -175121563 + (TA)n Simple_repeat Simple_repeat 1 80 0 2075 107 10 3 chr6 7293704 7294003 -175121239 - AluSc SINE Alu -8 301 1 1604 150 42 71 chr6 7294081 7294225 -175121017 - MLT1B LTR MaLR -46 344 197 2004 131 0 10 chr6 7294225 7294539 -175120703 - AluY SINE Alu 0 311 1 1604 150 42 71 chr6 7294539 7294654 -175120588 - MLT1B LTR MaLR -193 197 80 1725 109 94 0 chr6 7294654 7294910 -175120332 + AluSx SINE Alu 1 280 -32 189 0 0 0 chr6 7294910 7294931 -175120311 + (CAAT)n Simple_repeat Simple_repeat 4 24 0 1604 150 42 71 chr6 7294931 7295023 -175120219 - MLT1B LTR MaLR -308 82 1 742 173 8 24 chr6 7296023 7296150 -175119092 - FLAM_A SINE Alu -8 125 1 1238 151 18 14 chr6 7296181 7296399 -175118843 - MER20 DNA MER1_type 0 219 1 1407 78 0 0 chr6 7296733 7296912 -175118330 - AluSg/x SINE Alu -7 305 127 539 294 51 25 chr6 7296987 7297222 -175118020 + MIR SINE MIR 20 260 -2 1024 159 53 39 chr6 7297421 7297628 -175117614 - L1PB4 LINE L1 0 6156 5947 279 303 34 51 chr6 7298396 7298630 -175116612 + L2 LINE L2 2810 3039 -233 1943 89 78 0 chr6 7299240 7299521 -175115721 + AluSp SINE Alu 1 303 -10 1552 118 4 0 chr6 7299521 7299749 -175115493 + AluSg/x SINE Alu 82 311 -1 2159 118 3 0 chr6 7299780 7300086 -175115156 + AluSx SINE Alu 2 308 -4 22 0 0 0 chr6 7300122 7300144 -175115098 + AT_rich Low_complexity Low_complexity 1 22 0 40 49 0 0 chr6 7300199 7300260 -175114982 + AT_rich Low_complexity Low_complexity 1 61 0 301 235 37 99 chr6 7300260 7300422 -175114820 + L1MCa LINE L1 1941 2092 -4334 743 81 24 16 chr6 7300567 7300690 -175114552 - L1MB8 LINE L1 -9 6169 6046 899 209 0 0 chr6 7300705 7300858 -175114384 - FRAM SINE Alu -13 153 1 1248 138 4 43 chr6 7300862 7301093 -175114149 - AluSc SINE Alu -4 305 84 1868 116 56 3 chr6 7301093 7301378 -175113864 - AluSq SINE Alu -13 300 1 200 180 34 22 chr6 7301433 7301522 -175113720 + GA-rich Low_complexity Low_complexity 4 93 0 3962 138 14 2 chr6 7301537 7302160 -175113082 - L1MB7 LINE L1 -129 6055 5425 1678 189 3 0 chr6 7302272 7302578 -175112664 + AluJo SINE Alu 1 307 -5 22 0 0 0 chr6 7303481 7303503 -175111739 + GC_rich Low_complexity Low_complexity 1 22 0 922 199 8 34 chr6 7304602 7304869 -175110373 - AluSq SINE Alu -27 286 27 291 28 0 0 chr6 7305141 7305177 -175110065 + (CCG)n Simple_repeat Simple_repeat 3 38 0 204 263 0 0 chr6 7305266 7305323 -175109919 + G-rich Low_complexity Low_complexity 6 62 0 255 61 0 0 chr6 7305784 7305817 -175109425 + (TCC)n Simple_repeat Simple_repeat 1 33 0 29 60 0 0 chr6 7306270 7306320 -175108922 + GC_rich Low_complexity Low_complexity 1 50 0 28 29 0 0 chr6 7306551 7306586 -175108656 + GC_rich Low_complexity Low_complexity 1 35 0 22 0 0 0 chr6 7306752 7306774 -175108468 + GC_rich Low_complexity Low_complexity 1 22 0 195 42 0 0 chr6 7307947 7307971 -175107271 + (TG)n Simple_repeat Simple_repeat 2 25 0 231 244 0 0 chr6 7308614 7308659 -175106583 - L2 LINE L2 -10 3262 3218 21 0 0 0 chr6 7309595 7309616 -175105626 + AT_rich Low_complexity Low_complexity 1 21 0 184 194 0 0 chr6 7311339 7311370 -175103872 + MIR SINE MIR 159 189 -73 1264 138 10 0 chr6 7311608 7311804 -175103438 - AluSg/x SINE Alu -29 281 84 662 181 132 64 chr6 7311860 7312064 -175103178 + MER20 DNA MER1_type 2 219 0 289 369 114 29 chr6 7313155 7313751 -175101491 + L2 LINE L2 2258 2904 -410 2261 78 16 16 chr6 7314863 7315172 -175100070 - AluSq SINE Alu 0 313 5 675 159 0 103 chr6 7315205 7315350 -175099892 - FLAM_C SINE Alu -2 131 2 25 31 0 0 chr6 7315434 7315466 -175099776 + AT_rich Low_complexity Low_complexity 1 32 0 2093 124 0 0 chr6 7315589 7315888 -175099354 - AluSx SINE Alu -13 299 1 888 154 0 0 chr6 7316273 7316416 -175098826 - FLAM_C SINE Alu 0 143 1 1564 114 146 4 chr6 7316577 7316831 -175098411 + AluSg1 SINE Alu 4 293 -16 321 236 194 36 chr6 7316926 7317091 -175098151 - L2 LINE L2 -211 3061 2871 1721 164 0 10 chr6 7317636 7317935 -175097307 + AluJb SINE Alu 1 296 -16 1614 134 91 14 chr6 7318143 7318281 -175096961 - AluJb SINE Alu -16 296 170 2171 107 0 13 chr6 7318281 7318591 -175096651 - AluSx SINE Alu -6 306 1 1614 134 91 14 chr6 7318591 7318727 -175096515 - AluJb SINE Alu -142 170 1 217 351 69 30 chr6 7319126 7319257 -175095985 - L3 LINE CR1 -89 1488 1353 1924 150 0 7 chr6 7319727 7320033 -175095209 - AluJb SINE Alu -8 304 1 1967 117 3 17 chr6 7320630 7320929 -175094313 - AluSx SINE Alu -17 295 1 2410 60 0 3 chr6 7321078 7321378 -175093864 - AluY SINE Alu -12 299 1 600 258 39 57 chr6 7322168 7322397 -175092845 - MIR SINE MIR -1 261 37 2278 64 0 0 chr6 7323450 7323767 -175091475 - AluSg SINE Alu 0 317 1 1627 115 78 0 chr6 7323787 7324030 -175091212 - AluSq SINE Alu -45 268 7 376 224 84 28 chr6 7325935 7326042 -175089200 - MIR SINE MIR -76 186 74 2153 103 0 0 chr6 7326154 7326445 -175088797 + AluSx SINE Alu 1 291 -21 2051 134 0 0 chr6 7328084 7328382 -175086860 - AluSg SINE Alu -12 298 1 2291 54 40 0 chr6 7328397 7328693 -175086549 - AluY SINE Alu -3 308 1 371 269 67 8 chr6 7328728 7328847 -175086395 - MIR SINE MIR -32 230 105 580 227 74 23 chr6 7328905 7329081 -175086161 - MIR SINE MIR -62 200 16 525 134 12 0 chr6 7329146 7329228 -175086014 - AluJ/FLAM SINE Alu -228 84 2 1538 167 20 33 chr6 7329331 7329519 -175085723 - AluSx SINE Alu -16 296 112 2185 112 0 0 chr6 7329519 7329822 -175085420 - AluSq SINE Alu -10 303 1 1538 167 20 33 chr6 7329822 7329933 -175085309 - AluSx SINE Alu -200 112 1 496 188 0 0 chr6 7329954 7330039 -175085203 + L2 LINE L2 3229 3313 0 298 216 9 117 chr6 7330567 7330678 -175084564 - MIR3 SINE MIR -6 202 104 681 197 0 0 chr6 7330908 7331025 -175084217 + FLAM_A SINE Alu 1 117 -16 189 107 0 0 chr6 7331025 7331053 -175084189 + (TGAA)n Simple_repeat Simple_repeat 3 30 0 243 290 42 53 chr6 7331239 7331501 -175083741 - L1ME4a LINE L1 -65 6056 5798 759 183 0 22 chr6 7333905 7334042 -175081200 - FLAM_C SINE Alu -8 135 2 25 31 0 0 chr6 7338685 7338717 -175076525 + GC_rich Low_complexity Low_complexity 1 32 0 2209 65 0 20 chr6 7339410 7339702 -175075540 + AluSq SINE Alu 14 299 -14 237 65 0 0 chr6 7341307 7341338 -175073904 + (T)n Simple_repeat Simple_repeat 1 31 0 664 144 79 0 chr6 7341680 7341819 -175073423 + L1MA7 LINE L1 6133 6282 -9 189 107 0 0 chr6 7343434 7343462 -175071780 + (TC)n Simple_repeat Simple_repeat 2 29 0 198 71 0 0 chr6 7343568 7343596 -175071646 + (CA)n Simple_repeat Simple_repeat 2 29 0 407 231 28 0 chr6 7345856 7345964 -175069278 + L1MD2 LINE L1 6249 6359 0 2176 106 0 0 chr6 7346398 7346690 -175068552 - AluSx SINE Alu -20 292 1 229 175 0 0 chr6 7346933 7346973 -175068269 - L3b LINE CR1 -3 1580 1541 2278 76 0 7 chr6 7347154 7347456 -175067786 - AluSx SINE Alu -12 300 1 189 0 0 0 chr6 7350573 7350594 -175064648 + (T)n Simple_repeat Simple_repeat 1 21 0 21 0 0 0 chr6 7350700 7350721 -175064521 + AT_rich Low_complexity Low_complexity 1 21 0 279 0 0 0 chr6 7350881 7350912 -175064330 + (CA)n Simple_repeat Simple_repeat 2 32 0 509 274 37 93 chr6 7351190 7351544 -175063698 - MLT1I LTR MaLR -6 403 70 1084 138 69 0 chr6 7351680 7351854 -175063388 + MER5A DNA MER1_type 4 189 0 740 256 55 47 chr6 7351974 7352228 -175063014 - MIR SINE MIR -1 261 6 2041 122 0 13 chr6 7352767 7353078 -175062164 - AluSx SINE Alu -5 307 1 22 0 0 0 chr6 7353247 7353269 -175061973 + AT_rich Low_complexity Low_complexity 1 22 0 1957 124 0 7 chr6 7354617 7354915 -175060327 + AluSx SINE Alu 1 296 -16 185 139 0 28 chr6 7354915 7354942 -175060300 - L2 LINE L2 -22 3291 3264 1483 159 52 38 chr6 7354956 7355246 -175059996 + AluJb SINE Alu 1 294 -18 229 267 0 0 chr6 7357481 7357526 -175057716 - L2 LINE L2 -27 3286 3242 400 162 0 81 chr6 7357577 7357676 -175057566 - AluJ/FRAM SINE Alu -4 308 218 378 104 5 19 chr6 7357692 7357751 -175057491 - FLAM SINE Alu -11 122 71 21 71 0 0 chr6 7357772 7357814 -175057428 + AT_rich Low_complexity Low_complexity 1 42 0 1662 157 0 52 chr6 7357987 7358145 -175057097 - AluJb SINE Alu -22 290 154 2252 98 3 0 chr6 7358145 7358451 -175056791 - AluSc SINE Alu -2 307 1 1662 157 0 52 chr6 7358451 7358598 -175056644 - AluJb SINE Alu -158 154 1 229 0 54 27 chr6 7360287 7360324 -175054918 + (TTTTA)n Simple_repeat Simple_repeat 2 39 0 908 149 0 7 chr6 7360328 7360476 -175054766 - AluJb SINE Alu -24 288 142 2345 77 0 10 chr6 7360848 7361160 -175054082 - AluY SINE Alu -1 310 2 21 0 0 0 chr6 7364771 7364792 -175050450 + AT_rich Low_complexity Low_complexity 1 21 0 1992 82 85 4 chr6 7364817 7365098 -175050144 - AluSq SINE Alu -9 304 1 213 304 0 0 chr6 7365328 7365384 -175049858 - MIR SINE MIR -96 166 111 2192 94 20 0 chr6 7365446 7365744 -175049498 + AluSx SINE Alu 1 304 -8 420 304 193 46 chr6 7365863 7366277 -175048965 - L3 LINE CR1 -2 1575 1101 262 293 82 24 chr6 7366283 7366469 -175048773 + MIR SINE MIR 11 255 -7 453 209 85 52 chr6 7368335 7368488 -175046754 - MER5A DNA MER1_type -3 186 29 392 250 98 38 chr6 7368990 7369122 -175046120 + MIR SINE MIR 64 203 -59 1639 179 3 0 chr6 7369415 7369712 -175045530 - AluJo SINE Alu -14 298 1 761 177 8 0 chr6 7369884 7370014 -175045228 - FLAM_C SINE Alu -1 132 2 1550 109 97 4 chr6 7370742 7370989 -175044253 + AluSx SINE Alu 42 311 -1 1171 118 129 86 chr6 7371002 7371281 -175043961 + AluSx SINE Alu 21 311 -1 192 125 0 0 chr6 7371948 7371980 -175043262 + (AAATG)n Simple_repeat Simple_repeat 4 35 0 1981 137 13 0 chr6 7372070 7372376 -175042866 - AluSx SINE Alu -2 310 1 189 0 0 0 chr6 7372376 7372397 -175042845 + (TTTA)n Simple_repeat Simple_repeat 2 22 0 1794 147 7 3 chr6 7373383 7373676 -175041566 - AluJb SINE Alu -10 302 9 2101 117 7 7 chr6 7374402 7374710 -175040532 + AluSx SINE Alu 1 308 -4 1561 149 16 68 chr6 7375009 7375180 -175040062 - AluJo SINE Alu -19 293 144 2039 139 7 0 chr6 7375180 7375490 -175039752 - AluSx SINE Alu 0 312 1 1561 149 16 68 chr6 7375490 7375627 -175039615 - AluJo SINE Alu -168 144 1 23 54 0 0 chr6 7375627 7375664 -175039578 + AT_rich Low_complexity Low_complexity 1 37 0 578 169 0 48 chr6 7376742 7376866 -175038376 - FLAM_A SINE Alu 0 142 25 21 36 0 0 chr6 7377264 7377292 -175037950 + AT_rich Low_complexity Low_complexity 1 28 0 762 168 0 8 chr6 7377292 7377417 -175037825 - FLAM_C SINE Alu -17 126 3 295 277 85 11 chr6 7380512 7380606 -175034636 - L1ME LINE L1 -519 5602 5502 203 286 0 0 chr6 7380661 7380710 -175034532 + CT-rich Low_complexity Low_complexity 4 52 0 246 343 20 10 chr6 7380842 7380941 -175034301 - L2 LINE L2 -7 3306 3207 671 177 23 23 chr6 7381537 7381667 -175033575 + FLAM_A SINE Alu 1 130 -3 213 65 0 0 chr6 7381730 7381761 -175033481 + (TTA)n Simple_repeat Simple_repeat 3 33 0 27 0 0 0 chr6 7381874 7381901 -175033341 + AT_rich Low_complexity Low_complexity 1 27 0 896 102 0 0 chr6 7381902 7382020 -175033222 - FLAM_C SINE Alu -19 124 7 2239 101 0 0 chr6 7382755 7383053 -175032189 + AluSx SINE Alu 1 298 -14 698 255 98 13 chr6 7383277 7383512 -175031730 + MIR SINE MIR 5 259 -3 273 224 19 118 chr6 7383780 7383941 -175031301 + MER5A DNA MER1_type 21 165 -24 575 281 49 0 chr6 7384608 7384772 -175030470 - MIR SINE MIR -8 254 83 450 0 0 0 chr6 7385008 7385058 -175030184 + (TTTTA)n Simple_repeat Simple_repeat 1 50 0 671 101 50 0 chr6 7385058 7385157 -175030085 - HY1 scRNA scRNA -8 104 1 23 33 0 0 chr6 7385234 7385264 -175029978 + AT_rich Low_complexity Low_complexity 1 30 0 1818 132 3 52 chr6 7385341 7385668 -175029574 + AluSx SINE Alu 1 311 -1 249 159 0 0 chr6 7385883 7385927 -175029315 + (TG)n Simple_repeat Simple_repeat 2 45 0 1340 102 0 11 chr6 7385927 7386114 -175029128 - AluSg/x SINE Alu -32 280 96 464 315 31 0 chr6 7387807 7387937 -175027305 + MIR SINE MIR 11 144 -118 267 274 115 0 chr6 7387982 7388095 -175027147 + MIR SINE MIR 137 262 0 231 254 17 0 chr6 7388899 7388958 -175026284 - L1MB8 LINE L1 -20 6158 6099 * 1314 180 15 15 chr6 7388944 7389211 -175026031 - L1MB8 LINE L1 -345 5833 5567 1941 212 172 7 chr6 7389214 7389846 -175025396 - L1MB8 LINE L1 -1573 4573 3860 1955 132 0 0 chr6 7389855 7390144 -175025098 - AluSx SINE Alu -18 294 6 2609 207 36 69 chr6 7390150 7391047 -175024195 - L1MB8 LINE L1 -2690 3456 2590 275 273 322 0 chr6 7391071 7391192 -175024050 - MIR SINE MIR -91 171 12 1948 119 89 18 chr6 7391192 7391242 -175024000 - MER46B DNA MER2_type -2495 236 191 200 57 0 29 chr6 7391242 7391277 -175023965 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 1948 119 89 18 chr6 7391277 7391563 -175023679 - MER46B DNA MER2_type -2540 191 1 21 0 0 0 chr6 7391894 7391915 -175023327 + AT_rich Low_complexity Low_complexity 1 21 0 1702 149 0 4 chr6 7391924 7392192 -175023050 + AluSx SINE Alu 1 267 -45 700 272 49 0 chr6 7392530 7392714 -175022528 + MIR SINE MIR 70 262 0 279 104 0 0 chr6 7393855 7393903 -175021339 + (T)n Simple_repeat Simple_repeat 1 48 0 30 27 0 0 chr6 7394352 7394389 -175020853 + AT_rich Low_complexity Low_complexity 1 37 0 1386 162 79 0 chr6 7395089 7395330 -175019912 + AluSx SINE Alu 31 290 -22 276 273 165 8 chr6 7396878 7396999 -175018243 + MIR SINE MIR 117 256 -6 1006 150 0 0 chr6 7397314 7397499 -175017743 - AluJb SINE Alu 0 306 122 315 152 0 0 chr6 7397836 7397882 -175017360 + L1MC4 LINE L1 6658 6703 -1339 396 59 0 0 chr6 7397887 7397938 -175017304 + (TG)n Simple_repeat Simple_repeat 2 52 0 1989 105 59 0 chr6 7397939 7398225 -175017017 - AluSq SINE Alu -10 303 1 286 343 29 25 chr6 7400197 7400436 -175014806 + L3 LINE CR1 1043 1282 -295 557 196 10 0 chr6 7400930 7401027 -175014215 + FRAM SINE Alu 63 160 -16 637 256 18 0 chr6 7402804 7402972 -175012270 - MER5A DNA MER1_type -3 186 16 260 352 22 0 chr6 7403005 7403096 -175012146 - MIR SINE MIR -112 150 58 498 291 131 51 chr6 7404157 7404772 -175010470 - L2 LINE L2 -8 3305 2621 369 355 35 43 chr6 7404832 7405088 -175010154 - L1MC/D LINE L1 -2109 5699 5446 824 320 157 36 chr6 7405093 7405737 -175009505 + L3 LINE CR1 851 1572 -5 297 259 134 21 chr6 7406544 7406699 -175008543 + MIR SINE MIR 2 181 -27 549 198 0 0 chr6 7407220 7407326 -175007916 - AluJo/FRAM SINE Alu -2 310 205 448 118 0 0 chr6 7407325 7407393 -175007849 + AluS SINE Alu 227 294 -18 * 251 233 62 144 chr6 7408850 7408961 -175006281 + L2 LINE L2 3180 3278 -35 624 81 0 0 chr6 7408961 7409048 -175006194 + (TGGA)n Simple_repeat Simple_repeat 1 87 0 251 233 62 144 chr6 7409048 7409082 -175006160 + L2 LINE L2 3278 3313 0 211 286 165 30 chr6 7410664 7410797 -175004445 + MIR3 SINE MIR 24 174 -34 1952 133 3 16 chr6 7410807 7411123 -175004119 - AluSx SINE Alu 0 312 1 186 43 0 0 chr6 7412991 7413014 -175002228 + (CATTT)n Simple_repeat Simple_repeat 3 25 0 1536 179 4 14 chr6 7413016 7413296 -175001946 - AluJb SINE Alu -35 277 1 608 258 47 39 chr6 7413296 7413529 -175001713 - MER33 DNA MER1_type -53 271 37 192 321 49 12 chr6 7413755 7413836 -175001406 - L2 LINE L2 -4 3268 3185 437 90 164 0 chr6 7464992 7465059 -174950183 + AluSc SINE Alu 217 294 -15 232 278 156 0 chr6 7465061 7465151 -174950091 + MIR SINE MIR 145 248 -14 2425 81 3 13 chr6 7465371 7465680 -174949562 - AluSx SINE Alu -6 306 1 889 174 19 0 chr6 7465743 7465898 -174949344 - FRAM SINE Alu -8 158 1 1251 149 0 26 chr6 7465906 7466138 -174949104 - AluSg/x SINE Alu 0 317 91 759 155 0 0 chr6 7466391 7466507 -174948735 + FLAM_C SINE Alu 1 116 -17 676 142 0 9 chr6 7467461 7467567 -174947675 - FLAM_C SINE Alu -38 105 1 22 0 0 0 chr6 7467596 7467618 -174947624 + AT_rich Low_complexity Low_complexity 1 22 0 1291 122 20 93 chr6 7467665 7467747 -174947495 - MER30 DNA MER1_type 0 230 144 2289 76 7 3 chr6 7467747 7468063 -174947179 + AluSx SINE Alu 1 312 0 1291 122 20 93 chr6 7468063 7468226 -174947016 - MER30 DNA MER1_type -86 144 3 766 115 26 0 chr6 7468795 7468908 -174946334 + AluSg/x SINE Alu 170 285 -25 2258 118 0 0 chr6 7469203 7469508 -174945734 - AluSx SINE Alu -7 305 1 462 203 13 26 chr6 7469544 7469697 -174945545 + CT-rich Low_complexity Low_complexity 3 153 0 770 148 0 16 chr6 7469718 7469840 -174945402 - FLAM_C SINE Alu -11 122 3 531 118 0 0 chr6 7469980 7470065 -174945177 + (TA)n Simple_repeat Simple_repeat 1 85 0 22 0 0 0 chr6 7470122 7470144 -174945098 + AT_rich Low_complexity Low_complexity 1 22 0 1536 166 88 3 chr6 7470162 7470446 -174944796 + AluJb SINE Alu 1 308 -4 315 292 84 52 chr6 7470450 7470796 -174944446 + L1M4 LINE L1 3286 3642 -2504 185 150 0 25 chr6 7470835 7470875 -174944367 + (GGAA)n Simple_repeat Simple_repeat 1 39 0 1427 153 0 0 chr6 7471069 7471272 -174943970 + AluJb SINE Alu 105 307 -5 893 158 0 0 chr6 7471568 7471701 -174943541 - FLAM_C SINE Alu 0 133 1 402 157 253 0 chr6 7472240 7472323 -174942919 + AluY SINE Alu 2 105 -206 4369 141 16 18 chr6 7472531 7473296 -174941946 + L1MB3 LINE L1 5414 6176 -7 1818 122 4 0 chr6 7474120 7474366 -174940876 - AluSq SINE Alu -66 247 1 2023 118 0 17 chr6 7475217 7475549 -174939693 - AluSx SINE Alu 0 327 1 585 258 115 106 chr6 7475792 7476114 -174939128 + MLT1E1 LTR MaLR 194 518 -136 353 141 3 7 chr6 7476114 7476171 -174939071 + Alu SINE Alu 244 285 -17 2302 105 0 10 chr6 7476171 7476477 -174938765 + AluSx SINE Alu 1 303 -9 353 141 3 7 chr6 7476477 7476492 -174938750 + Alu SINE Alu 285 299 -3 841 143 0 0 chr6 7476492 7476618 -174938624 + FLAM_C SINE Alu 5 130 -3 716 228 34 0 chr6 7476650 7476799 -174938443 + MLT1E1 LTR MaLR 494 647 -7 483 281 89 49 chr6 7476816 7477102 -174938140 - L1ME LINE L1 -449 5672 5372 564 56 0 0 chr6 7477102 7477174 -174938068 + (TCTA)n Simple_repeat Simple_repeat 1 72 0 483 281 89 49 chr6 7477174 7477197 -174938045 - L1ME LINE L1 -749 5372 5351 1445 131 106 17 chr6 7477359 7477458 -174937784 + AluJb SINE Alu 38 127 -185 2119 129 0 13 chr6 7477458 7477768 -174937474 + AluSx SINE Alu 1 306 -6 1445 131 106 17 chr6 7477768 7477905 -174937337 + AluJb SINE Alu 127 295 -17 1832 164 0 10 chr6 7478113 7478412 -174936830 - AluJb SINE Alu -16 296 1 1750 175 34 0 chr6 7479066 7479357 -174935885 + AluJb SINE Alu 3 303 -9 207 69 0 0 chr6 7479933 7479962 -174935280 + (TC)n Simple_repeat Simple_repeat 2 30 0 180 0 0 0 chr6 7480077 7480097 -174935145 + (CA)n Simple_repeat Simple_repeat 2 21 0 2213 108 10 3 chr6 7480511 7480816 -174934426 + AluSx SINE Alu 1 307 -5 410 324 77 6 chr6 7481601 7481771 -174933471 + MIR SINE MIR 55 236 -26 207 352 46 19 chr6 7481867 7481975 -174933267 + L2 LINE L2 3185 3295 -18 428 127 13 13 chr6 7482135 7482206 -174933036 - Charlie1 DNA MER1_type 0 2761 2688 2358 95 3 0 chr6 7482206 7482511 -174932731 - AluSx SINE Alu -6 306 1 1266 177 72 16 chr6 7482585 7482834 -174932408 - AluJo SINE Alu -17 295 33 928 106 8 0 chr6 7483038 7483170 -174932072 - AluSg/x SINE Alu 0 312 180 208 303 34 51 chr6 7483343 7483577 -174931665 + L2 LINE L2 2810 3039 -233 2062 89 78 0 chr6 7484187 7484468 -174930774 + AluSp SINE Alu 1 303 -10 1631 119 4 0 chr6 7484468 7484693 -174930549 + AluSg/x SINE Alu 80 306 -4 2288 118 3 0 chr6 7484727 7485033 -174930209 + AluSx SINE Alu 2 308 -4 22 0 0 0 chr6 7485069 7485091 -174930151 + AT_rich Low_complexity Low_complexity 1 22 0 342 178 42 17 chr6 7485157 7485275 -174929967 + (TTATA)n Simple_repeat Simple_repeat 5 125 0 371 74 49 0 chr6 7485285 7485366 -174929876 + (TATAA)n Simple_repeat Simple_repeat 5 89 0 2302 96 0 0 chr6 7485942 7486233 -174929009 - AluY SINE Alu -20 291 1 302 296 152 8 chr6 7486272 7486404 -174928838 - MIR3 SINE MIR -28 180 30 736 121 129 0 chr6 7487073 7487189 -174928053 + FLAM_A SINE Alu 1 131 -2 491 129 35 0 chr6 7487246 7487331 -174927911 - MER2 DNA MER2_type -135 210 123 927 133 0 15 chr6 7487332 7487467 -174927775 + FLAM_C SINE Alu 1 133 0 726 212 8 0 chr6 7487513 7487645 -174927597 - MER2 DNA MER2_type -210 135 3 326 222 25 0 chr6 7487745 7487826 -174927416 - L1ME3A LINE L1 -9 6161 6079 401 202 103 21 chr6 7487849 7487992 -174927250 + MIR SINE MIR 45 201 -59 2354 63 0 11 chr6 7488060 7488346 -174926896 + AluY SINE Alu 2 284 -27 280 116 23 0 chr6 7488454 7488497 -174926745 - Alu SINE Alu -257 45 2 2217 120 7 3 chr6 7488508 7488817 -174926425 - AluSq SINE Alu -3 310 1 333 323 65 8 chr6 7489170 7489294 -174925948 + MIR3 SINE MIR 14 144 -64 2121 116 0 35 chr6 7489409 7489720 -174925522 + AluSx SINE Alu 4 303 -9 1427 145 33 21 chr6 7489818 7490060 -174925182 - L1PB4 LINE L1 0 6156 5912 21 0 0 0 chr6 7490067 7490088 -174925154 + AT_rich Low_complexity Low_complexity 1 21 0 1858 175 0 0 chr6 7490096 7490382 -174924860 + AluJo SINE Alu 6 291 -21 193 146 42 0 chr6 7490406 7490454 -174924788 + (TA)n Simple_repeat Simple_repeat 2 51 0 230 150 25 25 chr6 7490576 7490656 -174924586 + (TA)n Simple_repeat Simple_repeat 1 80 0 2192 107 10 3 chr6 7490681 7490980 -174924262 - AluSc SINE Alu -8 301 1 682 182 34 20 chr6 7491058 7491206 -174924036 - MLT1B LTR MaLR -46 344 195 287 312 0 0 chr6 7491354 7491431 -174923811 - MIR SINE MIR -184 78 2 1535 160 24 41 chr6 7492234 7492528 -174922714 - AluJb SINE Alu -12 300 12 2301 155 171 28 chr6 7492745 7493241 -174922001 + MLT1F1 LTR MaLR 1 567 0 200 349 48 0 chr6 7493257 7493340 -174921902 - L2 LINE L2 -50 3222 3136 309 272 83 71 chr6 7493414 7493583 -174921659 - L2 LINE L2 -182 3090 2920 284 274 18 53 chr6 7493644 7493757 -174921485 - L2 LINE L2 -497 2817 2709 383 318 134 17 chr6 7493786 7494195 -174921047 - L2 LINE L2 -705 2609 2153 203 289 52 31 chr6 7494302 7494399 -174920843 - L2 LINE L2 -1343 1971 1873 2274 84 0 3 chr6 7494423 7494709 -174920533 - AluY SINE Alu -16 295 11 216 189 0 0 chr6 7494883 7494920 -174920322 + GA-rich Low_complexity Low_complexity 2 38 0 629 174 41 8 chr6 7495789 7495910 -174919332 + FLAM_C SINE Alu 1 125 -8 44 63 0 0 chr6 7495910 7495989 -174919253 + AT_rich Low_complexity Low_complexity 1 79 0 185 353 17 17 chr6 7496115 7496174 -174919068 + MER5A DNA MER1_type 68 126 -63 2343 93 0 7 chr6 7496174 7496476 -174918766 - AluSc SINE Alu -9 300 1 185 353 17 17 chr6 7496476 7496535 -174918707 + MER5A DNA MER1_type 125 186 -3 636 138 0 28 chr6 7497594 7497703 -174917539 + AluSg/x SINE Alu 193 298 -12 513 102 4 0 chr6 7497705 7497783 -174917459 - L1MB2 LINE L1 -31 6137 6058 2176 114 0 0 chr6 7498051 7498341 -174916901 + AluSg SINE Alu 1 290 -20 326 154 0 0 chr6 7498341 7498393 -174916849 + Alu SINE Alu 1 52 -250 1055 211 30 35 chr6 7498981 7499087 -174916155 - MLT1C LTR MaLR -16 451 346 598 229 91 108 chr6 7499087 7499493 -174915749 - MER93a LTR ERV1 -3 399 1 1055 211 30 35 chr6 7499493 7499618 -174915624 - MLT1C LTR MaLR -121 346 221 1075 112 0 0 chr6 7499631 7499774 -174915468 - FLAM_C SINE Alu 0 143 1 1784 163 6 26 chr6 7499776 7500089 -174915153 - AluJb SINE Alu -5 307 1 1321 133 43 0 chr6 7500089 7500300 -174914942 - MLT1C LTR MaLR -233 234 15 198 392 8 0 chr6 7500560 7500685 -174914557 + MIR3 SINE MIR 30 155 -53 1564 162 0 58 chr6 7500882 7501012 -174914230 - AluJb SINE Alu -50 262 155 2276 93 3 44 chr6 7501012 7501333 -174913909 - AluSc SINE Alu -1 308 1 1564 162 0 58 chr6 7501333 7501480 -174913762 - AluJb SINE Alu -157 155 1 229 0 54 27 chr6 7503169 7503206 -174912036 + (TTTTA)n Simple_repeat Simple_repeat 2 39 0 970 149 0 7 chr6 7503210 7503358 -174911884 - AluJb SINE Alu -24 288 142 2463 80 0 10 chr6 7503730 7504042 -174911200 - AluY SINE Alu -1 310 2 1773 116 96 0 chr6 7505154 7505405 -174909837 + AluSx SINE Alu 6 280 -32 189 0 0 0 chr6 7505405 7505426 -174909816 + (CAAT)n Simple_repeat Simple_repeat 4 24 0 571 120 33 0 chr6 7505426 7505518 -174909724 - MLT1B LTR MaLR -295 95 1 738 173 8 24 chr6 7506518 7506645 -174908597 - FLAM_A SINE Alu -8 125 1 1233 151 18 14 chr6 7506676 7506894 -174908348 - MER20 DNA MER1_type 0 219 1 1467 84 0 0 chr6 7507228 7507407 -174907835 - AluSg/x SINE Alu -7 305 127 432 294 51 25 chr6 7507482 7507717 -174907525 + MIR SINE MIR 20 260 -2 1019 159 53 39 chr6 7507916 7508123 -174907119 - L1PB4 LINE L1 0 6156 5947 222 125 89 0 chr6 7508847 7508903 -174906339 + (TTATA)n Simple_repeat Simple_repeat 5 65 0 371 74 49 0 chr6 7508913 7508994 -174906248 + (TATAA)n Simple_repeat Simple_repeat 5 89 0 756 81 24 16 chr6 7509142 7509265 -174905977 - L1MB8 LINE L1 -9 6169 6046 894 209 0 0 chr6 7509280 7509433 -174905809 - FRAM SINE Alu -13 153 1 1314 121 4 61 chr6 7509437 7509668 -174905574 - AluSc SINE Alu -8 301 84 1983 116 56 3 chr6 7509668 7509953 -174905289 - AluSq SINE Alu -13 300 1 200 180 34 22 chr6 7510008 7510097 -174905145 + GA-rich Low_complexity Low_complexity 4 93 0 3985 138 14 2 chr6 7510112 7510735 -174904507 - L1MB7 LINE L1 -129 6055 5425 1788 183 3 7 chr6 7510847 7511153 -174904089 + AluJo SINE Alu 1 305 -7 2335 86 0 0 chr6 7512242 7512534 -174902708 + AluY SINE Alu 1 292 -19 2310 98 0 0 chr6 7512547 7512842 -174902400 + AluSx SINE Alu 3 297 -15 266 211 178 0 chr6 7513481 7513571 -174901671 + MIR SINE MIR 87 192 -70 2378 74 10 0 chr6 7513716 7514014 -174901228 + AluSp SINE Alu 1 301 -12 288 249 24 133 chr6 7514477 7514642 -174900600 + MIR3 SINE MIR 33 179 -29 305 367 114 29 chr6 7516413 7517009 -174898233 + L2 LINE L2 2258 2904 -410 2189 83 17 17 chr6 7518114 7518416 -174896826 - AluSq SINE Alu -7 306 5 655 166 0 103 chr6 7518449 7518594 -174896648 - FLAM_C SINE Alu -2 131 2 25 31 0 0 chr6 7518678 7518710 -174896532 + AT_rich Low_complexity Low_complexity 1 32 0 2093 124 0 0 chr6 7518833 7519132 -174896110 - AluSx SINE Alu -13 299 1 222 62 0 0 chr6 7519503 7519535 -174895707 + (T)n Simple_repeat Simple_repeat 1 32 0 595 201 18 174 chr6 7519635 7519859 -174895383 + MIR SINE MIR 48 236 -26 2138 116 6 61 chr6 7519959 7520305 -174894937 - MER7A DNA MER2_type 0 346 22 25 31 0 0 chr6 7520410 7520442 -174894800 + AT_rich Low_complexity Low_complexity 1 32 0 1915 120 0 3 chr6 7520587 7520900 -174894342 + AluSq SINE Alu 1 312 0 288 232 0 14 chr6 7521279 7521348 -174893894 + FLAM_A SINE Alu 66 133 0 270 81 0 0 chr6 7521832 7521869 -174893373 + (T)n Simple_repeat Simple_repeat 1 37 0 2158 92 3 3 chr6 7522104 7522397 -174892845 - AluSc SINE Alu -16 293 1 1004 103 0 0 chr6 7522397 7522533 -174892709 - AluSq/x SINE Alu -176 136 1 745 162 0 0 chr6 7522575 7522692 -174892550 + FLAM_A SINE Alu 1 117 -16 406 0 0 36 chr6 7522700 7522756 -174892486 + (TAAA)n Simple_repeat Simple_repeat 2 55 0 482 210 259 19 chr6 7522756 7522913 -174892329 - MIR SINE MIR -5 257 62 263 289 44 44 chr6 7523254 7523389 -174891853 - MIR SINE MIR -25 237 103 668 110 70 0 chr6 7523504 7523604 -174891638 - AluSq/x SINE Alu -204 108 2 2457 162 18 16 chr6 7523680 7524130 -174891112 - L1MB3 LINE L1 0 6183 5733 293 240 10 39 chr6 7524130 7524234 -174891008 - L1ME4a LINE L1 -31 6090 5990 318 284 14 85 chr6 7524270 7524321 -174890921 - L1MB3 LINE L1 -429 5692 5639 848 219 0 0 chr6 7524321 7524490 -174890752 + L1PA16 LINE L1 5981 6149 -17 318 284 14 85 chr6 7524490 7524579 -174890663 - L1MB3 LINE L1 -482 5639 5562 739 187 0 8 chr6 7524754 7524888 -174890354 - FLAM_C SINE Alu 0 133 1 221 284 153 9 chr6 7525725 7525871 -174889371 - MIR SINE MIR -68 140 5 183 148 0 0 chr6 7525935 7525962 -174889280 + MIR SINE MIR 83 109 -99 1574 150 14 31 chr6 7527460 7527746 -174887496 + AluJo SINE Alu 1 281 -31 1590 174 9 40 chr6 7527747 7528068 -174887174 + AluJo SINE Alu 1 311 -1 2147 122 0 0 chr6 7528096 7528407 -174886835 + AluSx SINE Alu 1 311 -1 1513 140 17 0 chr6 7528407 7528643 -174886599 - L1MB2 LINE L1 -251 5920 5681 229 240 200 30 chr6 7528735 7528835 -174886407 - MIR3 SINE MIR -3 205 89 1350 133 195 8 chr6 7529996 7530252 -174884990 + AluSg1 SINE Alu 1 304 -5 1534 159 19 48 chr6 7530272 7530586 -174884656 + AluJb SINE Alu 6 310 -2 303 203 0 0 chr6 7530601 7530670 -174884572 + GA-rich Low_complexity Low_complexity 4 72 0 543 148 218 0 chr6 7530680 7530781 -174884461 + AluJb SINE Alu 2 124 -188 22 35 0 0 chr6 7530985 7531014 -174884228 + AT_rich Low_complexity Low_complexity 1 29 0 2043 124 7 3 chr6 7531386 7531685 -174883557 + AluSq SINE Alu 1 300 -13 1617 131 3 125 chr6 7532268 7532612 -174882630 + AluJo SINE Alu 1 302 0 21 0 0 0 chr6 7532612 7532633 -174882609 + AT_rich Low_complexity Low_complexity 1 21 0 671 188 8 16 chr6 7532949 7533196 -174882046 + AluJ SINE Alu 2 133 -169 386 338 33 7 chr6 7533330 7533481 -174881761 + L2 LINE L2 3147 3301 -12 329 315 62 15 chr6 7533531 7533661 -174881581 + L2 LINE L2 2910 3045 -227 2124 107 3 0 chr6 7533682 7533973 -174881269 + AluSg SINE Alu 1 292 -18 22419 99 17 13 chr6 7534111 7537348 -174877894 + L1PA6 LINE L1 11 3261 -2885 7199 50 6 2 chr6 7537348 7538738 -174876504 + L1PA6 LINE L1 4762 6154 0 217 331 123 13 chr6 7538916 7539070 -174876172 + L2 LINE L2 3102 3272 0 902 173 6 0 chr6 7539726 7539888 -174875354 + AluJ SINE Alu 140 302 -10 2126 109 0 26 chr6 7539914 7540226 -174875016 + AluSq SINE Alu 1 304 -9 255 61 0 0 chr6 7540958 7540991 -174874251 + (TCC)n Simple_repeat Simple_repeat 1 33 0 29 60 0 0 chr6 7541444 7541494 -174873748 + GC_rich Low_complexity Low_complexity 1 50 0 28 29 0 0 chr6 7541725 7541760 -174873482 + GC_rich Low_complexity Low_complexity 1 35 0 22 0 0 0 chr6 7541926 7541948 -174873294 + GC_rich Low_complexity Low_complexity 1 22 0 285 29 0 0 chr6 7543121 7543155 -174872087 + (TG)n Simple_repeat Simple_repeat 2 35 0 231 244 0 0 chr6 7543798 7543843 -174871399 - L2 LINE L2 -10 3262 3218 21 0 0 0 chr6 7544779 7544800 -174870442 + AT_rich Low_complexity Low_complexity 1 21 0 184 194 0 0 chr6 7546523 7546554 -174868688 + MIR SINE MIR 159 189 -73 1217 134 11 0 chr6 7546792 7546979 -174868263 - AluSg/x SINE Alu -29 283 95 338 253 48 0 chr6 7547082 7547165 -174868077 - L1MC4 LINE L1 -1342 6700 6614 317 348 0 0 chr6 7547087 7547176 -174868066 + L1MC4 LINE L1 6614 6702 -1340 * 1663 155 7 4 chr6 7548320 7548598 -174866644 + AluJo SINE Alu 12 290 -22 24 0 0 0 chr6 7548598 7548622 -174866620 + AT_rich Low_complexity Low_complexity 1 24 0 3144 65 5 0 chr6 7548907 7549308 -174865934 - L1PA8A LINE L1 -27 6104 5702 22 0 0 0 chr6 7549574 7549596 -174865646 + AT_rich Low_complexity Low_complexity 1 22 0 2016 114 7 0 chr6 7549834 7550133 -174865109 + AluY SINE Alu 1 301 -10 2270 63 0 26 chr6 7550737 7551039 -174864203 + AluY SINE Alu 1 294 -17 197 302 143 0 chr6 7551473 7551536 -174863706 - L2 LINE L2 -3 3310 3239 54 73 0 0 chr6 7551602 7551712 -174863530 + AT_rich Low_complexity Low_complexity 1 110 0 1607 159 4 7 chr6 7551733 7552009 -174863233 - AluJo SINE Alu -17 295 21 2254 107 3 0 chr6 7552067 7552377 -174862865 - AluSx SINE Alu -1 311 1 608 202 0 0 chr6 7552744 7552843 -174862399 - AluJ/FLAM SINE Alu -212 100 2 659 237 31 36 chr6 7553162 7553378 -174861864 + MIR SINE MIR 46 261 -1 1964 118 37 0 chr6 7553383 7553680 -174861562 - AluSx SINE Alu -4 308 1 610 330 172 12 chr6 7553721 7554309 -174860933 + L2 LINE L2 1965 2646 -668 847 122 0 0 chr6 7554736 7554851 -174860391 + AluSq/x SINE Alu 10 124 -189 2958 165 32 16 chr6 7554852 7555359 -174859883 + L1MB8 LINE L1 5308 5826 -352 1888 102 102 0 chr6 7555359 7555642 -174859600 + AluSx SINE Alu 1 312 0 2958 165 32 16 chr6 7555642 7555687 -174859555 + L1MB8 LINE L1 5826 5869 -309 745 271 133 17 chr6 7555801 7556103 -174859139 + MLT1I LTR MaLR 72 408 -1 346 322 29 47 chr6 7556105 7556276 -174858966 - MIR SINE MIR -16 246 79 362 237 0 13 chr6 7556485 7556561 -174858681 + Tigger5 DNA MER2_type 1 75 -2248 258 192 19 0 chr6 7556578 7556630 -174858612 - Tigger5 DNA MER2_type -20 2303 2251 1795 155 14 3 chr6 7556644 7556941 -174858301 + AluJb SINE Alu 2 301 -11 426 167 0 0 chr6 7556943 7557009 -174858233 + Tigger5 DNA MER2_type 2258 2323 0 255 240 154 23 chr6 7557165 7557315 -174857927 + MIR SINE MIR 23 201 -61 1400 177 108 63 chr6 7557315 7557694 -174857548 + MSTD LTR MaLR 1 396 0 255 240 154 23 chr6 7557694 7557713 -174857529 + MIR SINE MIR 201 216 -46 270 249 13 81 chr6 7558345 7558466 -174856776 - MIR SINE MIR -84 124 20 1411 227 31 68 chr6 7558475 7558785 -174856457 + MER58B DNA MER1_type 3 300 -2120 849 158 0 23 chr6 7558785 7558918 -174856324 - FLAM_C SINE Alu -3 130 1 1411 227 31 68 chr6 7558918 7558959 -174856283 + MER58B DNA MER1_type 300 341 0 232 267 0 17 chr6 7558989 7559049 -174856193 - MIR SINE MIR -122 140 82 485 266 5 65 chr6 7559839 7560023 -174855219 + L1MC4a LINE L1 7636 7808 0 2001 139 0 0 chr6 7560024 7560326 -174854916 + AluSx SINE Alu 1 302 -10 850 225 5 27 chr6 7560330 7560517 -174854725 + AluJb SINE Alu 130 312 0 411 169 13 0 chr6 7560522 7560599 -174854643 + MER116 DNA Mariner 2 79 -1 2207 82 0 0 chr6 7561216 7561496 -174853746 + AluSp SINE Alu 1 280 -33 360 94 0 0 chr6 7561502 7561555 -174853687 + (GGGA)n Simple_repeat Simple_repeat 4 56 0 207 182 0 0 chr6 7563410 7563443 -174851799 + polypyrimidine Low_complexity Low_complexity 1 33 0 189 107 0 0 chr6 7563556 7563584 -174851658 + (CCCCCG)n Simple_repeat Simple_repeat 1 28 0 34 55 0 0 chr6 7564126 7564181 -174851061 + GC_rich Low_complexity Low_complexity 1 55 0 21 0 0 0 chr6 7564305 7564326 -174850916 + GC_rich Low_complexity Low_complexity 1 21 0 355 134 55 43 chr6 7565604 7565729 -174849513 + HsTC2 DNA Tc2 9 1854 -44 342 200 19 150 chr6 7565731 7565891 -174849351 + MER103 DNA DNA 17 155 -11 2329 94 0 3 chr6 7566406 7566703 -174848539 + AluSp SINE Alu 1 296 -17 1703 179 10 23 chr6 7566754 7567062 -174848180 + AluJo SINE Alu 1 304 -8 189 254 14 84 chr6 7567188 7567259 -174847983 - MIR SINE MIR -56 206 141 279 399 43 6 chr6 7567275 7567438 -174847804 - L2 LINE L2 0 3272 3104 382 335 37 12 chr6 7567613 7567774 -174847468 - MIR3 SINE MIR -23 185 21 723 189 115 80 chr6 7568047 7568359 -174846883 + L1MC5 LINE L1 7609 7931 -30 1176 129 0 12 chr6 7569290 7569460 -174845782 - AluSg/x SINE Alu -24 288 121 324 70 0 0 chr6 7569572 7569615 -174845627 + (TC)n Simple_repeat Simple_repeat 2 44 0 207 0 0 0 chr6 7570009 7570032 -174845210 + (T)n Simple_repeat Simple_repeat 1 23 0 539 238 66 13 chr6 7570257 7570408 -174844834 - MIR SINE MIR -76 186 28 2292 93 3 7 chr6 7571057 7571358 -174843884 - AluSx SINE Alu -12 300 1 871 104 0 0 chr6 7571647 7571762 -174843480 - FLAM_C SINE Alu -15 118 4 2081 82 25 11 chr6 7572155 7572436 -174842806 - AluSx SINE Alu -26 286 2 195 69 0 0 chr6 7572491 7572520 -174842722 + (TG)n Simple_repeat Simple_repeat 2 30 0 215 272 88 40 chr6 7573520 7573645 -174841597 + MIR SINE MIR 17 147 -61 1809 149 0 24 chr6 7574770 7575081 -174840161 + AluJo SINE Alu 1 304 0 2097 92 22 0 chr6 7575081 7575381 -174839861 + AluSc SINE Alu 1 306 0 274 212 200 0 chr6 7575503 7575588 -174839654 + U13 snRNA snRNA 3 104 0 201 39 0 0 chr6 7575591 7575617 -174839625 + (CA)n Simple_repeat Simple_repeat 2 27 0 372 278 132 0 chr6 7575726 7575870 -174839372 - MIR SINE MIR -25 237 75 1606 109 0 0 chr6 7576278 7576479 -174838763 + AluSg SINE Alu 1 201 -109 186 346 0 25 chr6 7576967 7577048 -174838194 - L3 LINE CR1 -89 1488 1410 2012 150 0 10 chr6 7577568 7577875 -174837367 - AluJb SINE Alu -8 304 1 2064 124 3 17 chr6 7578472 7578771 -174836471 - AluSx SINE Alu -17 295 1 2553 60 0 3 chr6 7578920 7579221 -174836021 - AluY SINE Alu -11 300 1 514 228 25 51 chr6 7580011 7580169 -174835073 - MIR SINE MIR -1 261 108 2407 64 0 0 chr6 7581294 7581611 -174833631 - AluSg SINE Alu 0 317 1 1687 123 78 0 chr6 7581631 7581874 -174833368 - AluSq SINE Alu -45 268 7 331 224 84 28 chr6 7583779 7583886 -174831356 - MIR SINE MIR -76 186 74 2281 103 0 0 chr6 7583998 7584289 -174830953 + AluSx SINE Alu 1 291 -21 2204 128 0 0 chr6 7585928 7586226 -174829016 - AluSg SINE Alu -12 298 1 2419 54 40 0 chr6 7586241 7586537 -174828705 - AluY SINE Alu -3 308 1 306 277 67 8 chr6 7586572 7586691 -174828551 - MIR SINE MIR -32 230 105 508 227 74 23 chr6 7586749 7586925 -174828317 - MIR SINE MIR -62 200 16 518 134 12 0 chr6 7586990 7587072 -174828170 - AluJ/FLAM SINE Alu -228 84 2 1649 167 20 33 chr6 7587175 7587363 -174827879 - AluSx SINE Alu -16 296 112 2309 112 0 0 chr6 7587363 7587666 -174827576 - AluSq SINE Alu -10 303 1 1649 167 20 33 chr6 7587666 7587777 -174827465 - AluSx SINE Alu -200 112 1 452 188 0 0 chr6 7587798 7587883 -174827359 + L2 LINE L2 3229 3313 0 180 296 62 0 chr6 7587881 7587962 -174827280 - MIR SINE MIR -95 167 82 * 253 216 9 117 chr6 7588411 7588522 -174826720 - MIR3 SINE MIR -6 202 104 671 197 0 0 chr6 7588752 7588869 -174826373 + FLAM_A SINE Alu 1 117 -16 189 107 0 0 chr6 7588869 7588897 -174826345 + (TGAA)n Simple_repeat Simple_repeat 3 30 0 261 290 42 53 chr6 7589083 7589345 -174825897 - L1ME4a LINE L1 -65 6056 5798 769 175 0 22 chr6 7591749 7591886 -174823356 - FLAM_C SINE Alu -8 135 2 25 31 0 0 chr6 7596580 7596612 -174818630 + GC_rich Low_complexity Low_complexity 1 32 0 2344 65 0 20 chr6 7597305 7597598 -174817644 + AluSq SINE Alu 14 300 -13 246 62 0 0 chr6 7599203 7599235 -174816007 + (T)n Simple_repeat Simple_repeat 1 32 0 680 144 79 0 chr6 7599576 7599715 -174815527 + L1MA7 LINE L1 6133 6282 -9 189 107 0 0 chr6 7601335 7601363 -174813879 + (TC)n Simple_repeat Simple_repeat 2 29 0 198 71 0 0 chr6 7601469 7601497 -174813745 + (CA)n Simple_repeat Simple_repeat 2 29 0 405 231 28 0 chr6 7603757 7603865 -174811377 + L1MD2 LINE L1 6249 6359 0 2306 106 0 0 chr6 7604300 7604592 -174810650 - AluSx SINE Alu -20 292 1 212 175 0 0 chr6 7604835 7604875 -174810367 - L3b LINE CR1 -3 1580 1541 2408 76 0 7 chr6 7605056 7605358 -174809884 - AluSx SINE Alu -12 300 1 189 0 0 0 chr6 7608475 7608496 -174806746 + (T)n Simple_repeat Simple_repeat 1 21 0 21 0 0 0 chr6 7608602 7608623 -174806619 + AT_rich Low_complexity Low_complexity 1 21 0 405 0 0 0 chr6 7608783 7608828 -174806414 + (CA)n Simple_repeat Simple_repeat 2 46 0 481 274 37 93 chr6 7609106 7609460 -174805782 - MLT1I LTR MaLR -6 403 70 1080 138 69 0 chr6 7609596 7609770 -174805472 + MER5A DNA MER1_type 4 189 0 644 231 62 53 chr6 7609919 7610144 -174805098 - MIR SINE MIR -30 232 6 2170 119 0 13 chr6 7610683 7610994 -174804248 - AluSx SINE Alu -5 307 1 22 0 0 0 chr6 7611163 7611185 -174804057 + AT_rich Low_complexity Low_complexity 1 22 0 2071 125 0 7 chr6 7612533 7612830 -174802412 + AluSx SINE Alu 1 295 -17 1594 155 52 38 chr6 7612871 7613161 -174802081 + AluJb SINE Alu 1 294 -18 213 267 0 0 chr6 7615396 7615441 -174799801 - L2 LINE L2 -27 3286 3242 409 160 0 80 chr6 7615492 7615592 -174799650 - AluJ/FRAM SINE Alu -3 309 218 377 104 5 19 chr6 7615608 7615667 -174799575 - FLAM SINE Alu -11 122 71 21 71 0 0 chr6 7615688 7615730 -174799512 + AT_rich Low_complexity Low_complexity 1 42 0 215 254 32 16 chr6 7665968 7666031 -174749211 + CT-rich Low_complexity Low_complexity 5 68 0 2295 110 0 3 chr6 7670554 7670854 -174744388 + AluSx SINE Alu 1 299 -13 752 144 0 0 chr6 7670865 7670983 -174744259 + FLAM_C SINE Alu 1 118 -15 2387 84 7 0 chr6 7671688 7671985 -174743257 + AluSq SINE Alu 1 299 -14 222 277 15 15 chr6 7674053 7674118 -174741124 + MIR SINE MIR 111 175 -87 381 22 0 0 chr6 7675633 7675679 -174739563 + (GA)n Simple_repeat Simple_repeat 1 46 0 282 29 0 0 chr6 7676365 7676400 -174738842 + (TTA)n Simple_repeat Simple_repeat 1 35 0 318 153 0 0 chr6 7677542 7677601 -174737641 + (TTA)n Simple_repeat Simple_repeat 2 60 0 237 65 0 0 chr6 7678056 7678087 -174737155 + (T)n Simple_repeat Simple_repeat 1 31 0 1657 175 0 15 chr6 7678721 7678995 -174736247 + AluJo SINE Alu 9 278 -34 2393 82 3 0 chr6 7679453 7679744 -174735498 + AluY SINE Alu 1 292 -19 2215 93 17 10 chr6 7679749 7680051 -174735191 + AluSx SINE Alu 1 304 -8 416 274 117 11 chr6 7680378 7680557 -174734685 + MIR SINE MIR 13 210 -52 302 172 17 0 chr6 7680972 7681030 -174734212 + MER5A DNA MER1_type 9 67 -122 793 185 53 0 chr6 7681045 7681196 -174734046 + FRAM SINE Alu 2 160 -6 324 179 328 22 chr6 7682607 7682741 -174732501 - MLT1G LTR MaLR 0 590 416 273 296 49 45 chr6 7682806 7682846 -174732396 + MER5A DNA MER1_type 29 67 -122 2325 114 0 0 chr6 7682846 7683145 -174732097 + AluSq SINE Alu 1 299 -14 273 296 49 45 chr6 7683145 7683254 -174731988 + MER5A DNA MER1_type 67 186 -3 1771 162 4 22 chr6 7683670 7683948 -174731294 - AluSx SINE Alu -35 277 5 2030 129 13 13 chr6 7683960 7684271 -174730971 - AluJb SINE Alu -1 311 1 796 239 112 15 chr6 7684390 7684658 -174730584 - MER45C DNA AcHobo -659 294 1 195 100 0 0 chr6 7685485 7685515 -174729727 + (TTTA)n Simple_repeat Simple_repeat 2 31 0 791 169 15 0 chr6 7686324 7686454 -174728788 + FLAM_A SINE Alu 1 132 -1 617 210 0 8 chr6 7686736 7686855 -174728387 + FLAM_C SINE Alu 2 119 -24 180 0 0 0 chr6 7686856 7686876 -174728366 + (TAAA)n Simple_repeat Simple_repeat 4 23 0 2255 109 0 3 chr6 7689221 7689514 -174725728 - AluSq SINE Alu -21 292 1 2285 83 43 0 chr6 7690040 7690340 -174724902 - AluSp SINE Alu 0 313 1 188 67 33 0 chr6 7690351 7690381 -174724861 + (TTTC)n Simple_repeat Simple_repeat 2 32 0 2448 99 0 3 chr6 7690385 7690699 -174724543 - AluSq SINE Alu 0 313 1 1203 215 115 6 chr6 7691273 7691603 -174723639 + MLT1B LTR MaLR 9 374 -16 2148 139 0 0 chr6 7691939 7692242 -174723000 - AluSx SINE Alu -7 305 3 183 200 22 22 chr6 7692583 7692628 -174722614 + L3 LINE CR1 1514 1558 -19 866 228 122 4 chr6 7692711 7692948 -174722294 + LTR41 LTR ERVL 1 265 -508 512 90 0 26 chr6 7693198 7693276 -174721966 - Alu SINE Alu -9 302 227 365 229 57 57 chr6 7693277 7693417 -174721825 + LTR41 LTR ERVL 620 759 -14 578 243 77 0 chr6 7694090 7694259 -174720983 + MER5A DNA MER1_type 7 188 -1 206 244 13 39 chr6 7694372 7694450 -174720792 - MER5A DNA MER1_type -26 163 88 216 278 0 0 chr6 7694892 7694946 -174720296 + (CAATT)n Simple_repeat Simple_repeat 4 57 0 333 242 125 31 chr6 7696205 7696333 -174718909 - L2 LINE L2 -1 3312 3173 1874 246 79 35 chr6 7696483 7696926 -174718316 + L1MC4 LINE L1 7348 7829 -213 2432 73 17 0 chr6 7696926 7697226 -174718016 + AluSp SINE Alu 1 305 -8 1874 246 79 35 chr6 7697226 7697431 -174717811 + L1MC4 LINE L1 7829 8024 -18 209 355 35 23 chr6 7697590 7697762 -174717480 - L2 LINE L2 -541 2773 2600 2352 103 0 3 chr6 7697969 7698270 -174716972 + AluSp SINE Alu 1 300 -13 326 318 162 0 chr6 7698377 7698531 -174716711 + MIR SINE MIR 33 211 -51 203 273 91 30 chr6 7700559 7700658 -174714584 - MER5A DNA MER1_type -34 155 51 657 0 80 0 chr6 7700893 7701006 -174714236 + (TA)n Simple_repeat Simple_repeat 2 123 0 2285 82 21 0 chr6 7701006 7701288 -174713954 - AluSg SINE Alu -22 288 1 506 284 231 33 chr6 7701336 7701635 -174713607 + L3 LINE CR1 1207 1564 -13 338 309 87 0 chr6 7701888 7702014 -174713228 - MIR SINE MIR -108 154 18 918 101 0 81 chr6 7702025 7702174 -174713068 - AluJo SINE Alu -175 137 1 1768 149 0 30 chr6 7702875 7703170 -174712072 + AluSx SINE Alu 3 288 -24 2525 63 0 0 chr6 7703180 7703482 -174711760 + AluY SINE Alu 1 302 -9 1166 118 0 0 chr6 7703482 7703665 -174711577 + AluSg/x SINE Alu 134 316 0 701 128 9 0 chr6 7703731 7703840 -174711402 - FLAM_C SINE Alu -32 111 2 2251 137 0 0 chr6 7703853 7704160 -174711082 - AluSx SINE Alu -5 307 1 395 249 171 8 chr6 7704626 7704794 -174710448 + MIR SINE MIR 21 213 -49 196 286 143 51 chr6 7704769 7704867 -174710375 - L2 LINE L2 -13 3300 3194 * 288 0 0 0 chr6 7704905 7704937 -174710305 + (TG)n Simple_repeat Simple_repeat 1 32 0 261 0 0 0 chr6 7704936 7704965 -174710277 + (GA)n Simple_repeat Simple_repeat 1 29 0 * 2222 89 11 7 chr6 7704992 7705273 -174709969 - AluSx SINE Alu -30 282 1 2578 63 0 0 chr6 7705806 7706108 -174709134 + AluY SINE Alu 1 302 -9 2282 110 3 0 chr6 7706121 7706420 -174708822 + AluSx SINE Alu 1 300 -12 2267 92 35 0 chr6 7707283 7707565 -174707677 - AluSg SINE Alu -18 292 1 22 0 0 0 chr6 7709614 7709636 -174705606 + AT_rich Low_complexity Low_complexity 1 22 0 2185 103 7 7 chr6 7709666 7709822 -174705420 - AluSx SINE Alu -21 291 133 2319 117 0 0 chr6 7709822 7710122 -174705120 - AluSx SINE Alu -12 300 1 2185 103 7 7 chr6 7710122 7710256 -174704986 - AluSx SINE Alu -178 134 1 234 212 384 13 chr6 7711128 7711279 -174703963 - MIR SINE MIR -18 244 38 1998 146 6 16 chr6 7711969 7712284 -174702958 + AluSx SINE Alu 1 312 0 252 329 95 25 chr6 7712590 7712748 -174702494 + MIR SINE MIR 82 250 -12 2184 90 10 29 chr6 7713203 7713514 -174701728 + AluSx SINE Alu 1 305 -7 1038 128 60 0 chr6 7717475 7717624 -174697618 - AluSg/x SINE Alu -18 292 135 2103 125 3 23 chr6 7717687 7717990 -174697252 + AluSx SINE Alu 1 297 -15 2043 140 14 3 chr6 7718365 7718658 -174696584 + AluJb SINE Alu 1 296 -16 291 324 170 32 chr6 7718670 7719112 -174696130 + L2 LINE L2 2196 2698 -616 749 194 0 8 chr6 7719126 7719260 -174695982 - FLAM_A SINE Alu 0 133 1 549 241 30 60 chr6 7719582 7719748 -174695494 + MER8 DNA MER2_type 1 161 -78 22 35 0 0 chr6 7719749 7719778 -174695464 + AT_rich Low_complexity Low_complexity 1 29 0 1431 108 19 0 chr6 7719781 7719994 -174695248 - L1PB2 LINE L1 -5 6146 5930 1459 163 106 4 chr6 7720025 7720289 -174694953 - AluJb SINE Alu -21 291 1 366 134 15 30 chr6 7720357 7720424 -174694818 - Tigger2 DNA MER2_type -2651 67 2 359 349 11 37 chr6 7720662 7720851 -174694391 + L1MC4a LINE L1 5682 5865 -1943 2212 88 0 11 chr6 7720981 7721295 -174693947 + AluSx SINE Alu 1 311 0 695 183 9 0 chr6 7722128 7722243 -174692999 - FLAM_A SINE Alu -17 116 1 345 264 0 58 chr6 7723221 7723342 -174691900 + G-rich Low_complexity Low_complexity 2 115 0 1854 166 13 0 chr6 7723514 7723815 -174691427 + AluJb SINE Alu 1 305 -7 1777 180 3 10 chr6 7724019 7724319 -174690923 + AluJo SINE Alu 1 298 -14 609 183 8 32 chr6 7725601 7725727 -174689515 + FLAM_A SINE Alu 1 123 -10 1961 118 38 3 chr6 7725993 7726280 -174688962 + AluSp SINE Alu 2 298 -15 240 333 61 25 chr6 7726700 7726898 -174688344 + L3b LINE CR1 1266 1470 -113 2370 98 0 0 chr6 7727221 7727517 -174687725 - AluSx SINE Alu -15 297 2 323 313 46 30 chr6 7728210 7728341 -174686901 - MER117 DNA MER1_type -57 140 8 2233 111 7 0 chr6 7729059 7729357 -174685885 + AluSc SINE Alu 1 300 -9 2352 84 7 13 chr6 7729432 7729740 -174685502 + AluSg SINE Alu 1 306 -4 767 142 0 0 chr6 7729792 7729912 -174685330 + AluSg/x SINE Alu 173 292 -20 1823 107 103 4 chr6 7730284 7730555 -174684687 + AluSx SINE Alu 1 298 -14 263 308 55 0 chr6 7730711 7730802 -174684440 - MER5A DNA MER1_type -84 105 10 696 204 27 34 chr6 7730819 7730966 -174684276 - MER58B DNA MER1_type 0 341 196 265 233 167 0 chr6 7731154 7731244 -174683998 + L1MB7 LINE L1 6079 6183 -1 225 215 77 0 chr6 7732224 7732289 -174682953 - L2 LINE L2 -1757 1557 1488 2278 75 0 52 chr6 7732711 7733018 -174682224 - AluY SINE Alu -20 291 1 2402 53 0 4 chr6 7733210 7733491 -174681751 + AluY SINE Alu 1 280 -31 1598 155 62 0 chr6 7734126 7734384 -174680858 - AluJo SINE Alu -21 291 18 218 218 95 129 chr6 7735250 7735397 -174679845 + L2 LINE L2 3136 3277 -36 1938 137 0 23 chr6 7735748 7736047 -174679195 + AluJo SINE Alu 1 292 -20 2646 94 16 11 chr6 7736076 7736449 -174678793 + THE1C LTR MaLR 1 375 0 966 174 0 18 chr6 7736800 7736967 -174678275 - FRAM SINE Alu -2 164 1 2159 131 3 0 chr6 7737205 7737511 -174677731 + AluSx SINE Alu 1 307 -5 23 33 0 0 chr6 7738242 7738272 -174676970 + AT_rich Low_complexity Low_complexity 1 30 0 2187 104 0 3 chr6 7740245 7740533 -174674709 - AluSx SINE Alu -25 287 1 494 256 128 10 chr6 7740784 7740979 -174674263 - MIR SINE MIR -24 238 21 2182 91 144 6 chr6 7741276 7741617 -174673625 - pTR5 LTR ERV1 -2046 392 5 1209 181 19 39 chr6 7741614 7742180 -174673062 + pTR5 LTR ERV1 743 1346 -1092 * 2537 185 209 41 chr6 7742193 7742897 -174672345 + LTR12 LTR ERV1 4 825 -1 3917 152 190 40 chr6 7742897 7743856 -174671386 - pTR5 LTR ERV1 -404 1756 31 2231 107 0 17 chr6 7744972 7745270 -174669972 - AluSx SINE Alu -19 293 1 458 268 159 22 chr6 7745271 7745547 -174669695 + L2 LINE L2 2999 3312 -1 204 40 0 0 chr6 7745709 7745734 -174669508 + (A)n Simple_repeat Simple_repeat 1 25 0 615 308 147 22 chr6 7745945 7745993 -174669249 + L2 LINE L2 1445 1486 -1828 2056 123 17 3 chr6 7745993 7746286 -174668956 - AluJo SINE Alu -5 307 11 615 308 147 22 chr6 7746286 7746653 -174668589 + L2 LINE L2 1486 1912 -1402 807 273 73 57 chr6 7746770 7746794 -174668448 + HERV16 LTR ERVL 1165 1187 -3809 1067 220 125 32 chr6 7746794 7747009 -174668233 - MER2 DNA MER2_type -2 342 88 2424 68 0 0 chr6 7747009 7747301 -174667941 - AluY SINE Alu -19 292 1 1067 220 125 32 chr6 7747301 7747398 -174667844 - MER2 DNA MER2_type -256 88 1 807 273 73 57 chr6 7747398 7747814 -174667428 + HERV16 LTR ERVL 1187 1595 -3401 2453 92 0 0 chr6 7747814 7748120 -174667122 + AluSc SINE Alu 1 306 -3 807 273 73 57 chr6 7748120 7748173 -174667069 + HERV16 LTR ERVL 1595 1646 -3350 1058 171 89 131 chr6 7748173 7748336 -174666906 + MLT1A1 LTR MaLR 1 169 -196 2205 135 0 0 chr6 7748336 7748640 -174666602 - AluSx SINE Alu -8 304 1 1058 171 89 131 chr6 7748640 7748786 -174666456 + MLT1A1 LTR MaLR 169 294 -71 2441 82 0 0 chr6 7748786 7749089 -174666153 - AluSc SINE Alu -6 303 1 1058 171 89 131 chr6 7749089 7749159 -174666083 + MLT1A1 LTR MaLR 294 365 0 807 273 73 57 chr6 7749159 7749259 -174665983 + HERV16 LTR ERVL 1646 1833 -3163 353 270 43 26 chr6 7749368 7749483 -174665759 + HERV16 LTR ERVL 2334 2450 -2546 597 229 0 0 chr6 7749636 7749767 -174665475 + L1MB7 LINE L1 6039 6169 -15 181 231 116 33 chr6 7751412 7751533 -174663709 + L2 LINE L2 1554 1684 -1630 350 57 19 0 chr6 7751862 7751915 -174663327 + (TA)n Simple_repeat Simple_repeat 1 54 0 2266 111 0 13 chr6 7751916 7752222 -174663020 - AluSx SINE Alu -10 302 1 651 136 34 25 chr6 7752443 7752561 -174662681 - AluJo SINE Alu -18 294 176 438 171 48 19 chr6 7752587 7752692 -174662550 - AluJo SINE Alu -118 194 87 2508 65 0 7 chr6 7752693 7753000 -174662242 - AluY SINE Alu -6 305 1 2012 127 0 0 chr6 7753629 7753905 -174661337 - AluSx SINE Alu -13 299 24 647 143 107 0 chr6 7753905 7754017 -174661225 - AluSq/x SINE Alu -187 125 2 2340 75 4 0 chr6 7754224 7754505 -174660737 + AluSp SINE Alu 1 282 -31 270 0 0 0 chr6 7754508 7754538 -174660704 + (TAAA)n Simple_repeat Simple_repeat 2 31 0 1961 155 6 3 chr6 7755136 7755449 -174659793 + L1MA5 LINE L1 5950 6266 -34 414 0 0 0 chr6 7755449 7755495 -174659747 + (TG)n Simple_repeat Simple_repeat 2 47 0 2226 114 0 3 chr6 7755510 7755808 -174659434 - AluSx SINE Alu -15 297 1 233 152 43 0 chr6 7755808 7755854 -174659388 + L1MA5 LINE L1 6253 6300 0 659 345 26 7 chr6 7755916 7756220 -174659022 - L2 LINE L2 -452 2862 2553 2061 144 3 0 chr6 7756681 7756987 -174658255 + AluSx SINE Alu 1 307 -5 21 36 0 0 chr6 7757489 7757517 -174657725 + AT_rich Low_complexity Low_complexity 1 28 0 2410 104 0 0 chr6 7759517 7759826 -174655416 - AluSq SINE Alu -4 309 1 297 51 0 0 chr6 7760214 7760253 -174654989 + (TA)n Simple_repeat Simple_repeat 1 39 0 2384 79 3 0 chr6 7760253 7760543 -174654699 - AluSx SINE Alu -21 291 1 21 0 0 0 chr6 7760565 7760586 -174654656 + AT_rich Low_complexity Low_complexity 1 21 0 2083 142 10 0 chr6 7761022 7761331 -174653911 + AluJb SINE Alu 1 312 0 1827 193 86 29 chr6 7761438 7761916 -174653326 - MLT1D LTR MaLR 0 505 1 694 194 49 170 chr6 7761954 7762173 -174653069 - MER102b DNA MER1_type -1087 341 179 1786 161 18 7 chr6 7762173 7762452 -174652790 - AluJo SINE Alu -30 282 1 694 194 49 170 chr6 7762452 7762604 -174652638 - MER102b DNA MER1_type -1249 179 10 4902 207 98 16 chr6 7763051 7763083 -174652159 - L1MC/D LINE L1 -758 5388 5360 1998 162 0 0 chr6 7763083 7763385 -174651857 - AluSx SINE Alu -10 302 1 4902 207 98 16 chr6 7763385 7763616 -174651626 - L1MC/D LINE L1 -786 5360 5149 2379 84 7 19 chr6 7763616 7763925 -174651317 + AluSg SINE Alu 1 305 -5 4902 207 98 16 chr6 7763925 7765126 -174650116 - L1MC/D LINE L1 -997 5149 3843 322 173 39 0 chr6 7765154 7765206 -174650036 - MLT1D LTR MaLR -418 87 34 647 92 11 0 chr6 7765235 7765346 -174649896 - L1PB1 LINE L1 -100 6051 5940 5430 91 8 2 chr6 7766174 7767016 -174648226 - L1PB1 LINE L1 -178 5973 5128 1225 219 0 7 chr6 7769247 7769535 -174645707 - L1PB1 LINE L1 -1018 5128 4843 1701 97 0 9 chr6 7769566 7769793 -174645449 + AluSg/x SINE Alu 85 309 -1 4389 156 137 49 chr6 7770600 7771947 -174643295 + pTR5 LTR ERV1 730 2328 -110 191 264 84 78 chr6 7771947 7772114 -174643128 - L2 LINE L2 -482 2832 2665 2133 106 14 7 chr6 7772221 7772513 -174642729 + AluY SINE Alu 1 294 -17 468 88 15 0 chr6 7772662 7772730 -174642512 - MER41B LTR ERV1 -86 549 481 1854 152 21 0 chr6 7772848 7773137 -174642105 + AluJo SINE Alu 1 295 -17 1828 166 0 34 chr6 7773140 7773460 -174641782 + AluSx SINE Alu 1 309 -3 22 35 0 0 chr6 7773609 7773638 -174641604 + AT_rich Low_complexity Low_complexity 1 29 0 13333 186 26 33 chr6 7773652 7776226 -174639016 + L1PB1 LINE L1 6 2596 -4300 2154 125 6 3 chr6 7776226 7776538 -174638704 + AluSq SINE Alu 1 313 0 13333 186 26 33 chr6 7776538 7778094 -174637148 + L1PB1 LINE L1 2596 4161 -2735 209 81 0 27 chr6 7778094 7778131 -174637111 + (TAAAA)n Simple_repeat Simple_repeat 1 36 0 13333 186 26 33 chr6 7778131 7780272 -174634970 + L1PB1 LINE L1 4161 6511 -385 414 0 0 0 chr6 7780272 7780318 -174634924 + (CA)n Simple_repeat Simple_repeat 2 47 0 13333 186 26 33 chr6 7780318 7780702 -174634540 + L1PB1 LINE L1 6511 6896 0 32 26 0 0 chr6 7780737 7780776 -174634466 + AT_rich Low_complexity Low_complexity 1 39 0 1668 174 24 7 chr6 7782295 7782593 -174632649 + AluJo SINE Alu 1 303 -9 2256 96 13 3 chr6 7783371 7783673 -174631569 - AluSx SINE Alu -7 305 1 244 257 11 140 chr6 7784275 7784360 -174630882 - L1MA10 LINE L1 -4 6330 6236 1553 129 0 0 chr6 7784360 7784584 -174630658 - AluSg/x SINE Alu -3 309 86 244 257 11 140 chr6 7784584 7784603 -174630639 - L1MA10 LINE L1 -98 6236 6216 396 0 0 0 chr6 7784603 7784647 -174630595 + (TA)n Simple_repeat Simple_repeat 2 45 0 2616 182 29 76 chr6 7784655 7785134 -174630108 - L1ME1 LINE L1 -92 6074 5574 1272 167 114 43 chr6 7785134 7785415 -174629827 + AluJo SINE Alu 1 301 -11 2616 182 29 76 chr6 7785415 7785627 -174629615 - L1ME1 LINE L1 -592 5574 5416 2306 92 3 3 chr6 7785627 7785922 -174629320 - AluSq SINE Alu -18 295 1 2616 182 29 76 chr6 7785922 7785954 -174629288 - L1ME1 LINE L1 -750 5416 5384 2230 168 104 28 chr6 7786409 7786878 -174628364 - MLT1D LTR MaLR 0 505 1 2176 109 0 10 chr6 7787237 7787540 -174627702 + AluSx SINE Alu 1 300 -12 812 222 144 92 chr6 7789304 7789557 -174625685 - L1MC5 LINE L1 -1 7960 7722 1949 131 3 20 chr6 7789557 7789862 -174625380 + AluSx SINE Alu 1 300 -12 812 222 144 92 chr6 7789862 7790274 -174624968 - L1MC5 LINE L1 -239 7722 7260 587 220 30 18 chr6 7790406 7790574 -174624668 - L1MC5 LINE L1 -733 7228 7059 2271 108 0 3 chr6 7791038 7791343 -174623899 - AluSg SINE Alu -6 304 1 21 0 0 0 chr6 7792511 7792532 -174622710 + AT_rich Low_complexity Low_complexity 1 21 0 2329 103 0 0 chr6 7792539 7792840 -174622402 + AluSx SINE Alu 1 301 -11 2383 215 75 2 chr6 7792900 7793417 -174621825 + MER68 LTR ERV1 1 555 -7 384 267 68 19 chr6 7793590 7793796 -174621446 - L1MC5 LINE L1 -22 7939 7724 214 178 0 0 chr6 7793854 7793899 -174621343 + T-rich Low_complexity Low_complexity 1 45 0 1463 148 4 4 chr6 7793921 7794150 -174621092 - AluJb SINE Alu -83 229 1 2206 96 0 60 chr6 7794528 7794860 -174620382 + AluSx SINE Alu 1 312 0 2424 77 6 6 chr6 7795571 7795883 -174619359 - AluSq SINE Alu -1 312 1 403 235 71 0 chr6 7795946 7796044 -174619198 - MIR SINE MIR -109 153 49 1594 138 14 86 chr6 7796744 7796867 -174618375 - Charlie1b DNA MER1_type -2241 520 390 1647 172 11 11 chr6 7796867 7797166 -174618076 - AluJo SINE Alu 0 304 6 1594 138 14 86 chr6 7797166 7797464 -174617778 - Charlie1b DNA MER1_type -2371 390 53 1186 148 28 0 chr6 7797691 7797873 -174617369 + MER5A DNA MER1_type 3 189 0 2207 107 0 22 chr6 7798076 7798394 -174616848 + AluSx SINE Alu 1 311 -1 2276 101 10 0 chr6 7798765 7799061 -174616181 + AluSx SINE Alu 1 299 -13 1718 168 0 31 chr6 7799234 7799526 -174615716 - AluJo SINE Alu -2 310 28 2150 134 0 13 chr6 7801323 7801637 -174613605 + AluSx SINE Alu 1 310 -2 2369 100 0 3 chr6 7801704 7802014 -174613228 + AluSc SINE Alu 1 309 0 1325 192 91 25 chr6 7802030 7802316 -174612926 + AluJb SINE Alu 1 305 -7 524 292 35 59 chr6 7802399 7802506 -174612736 + L2 LINE L2 2722 2830 -442 1577 194 96 72 chr6 7802506 7802683 -174612559 + MSTD LTR MaLR 1 172 -224 2104 110 0 0 chr6 7802683 7803012 -174612230 + AluY SINE Alu 1 329 0 1577 194 96 72 chr6 7803012 7803220 -174612022 + MSTD LTR MaLR 172 396 0 524 292 35 59 chr6 7803220 7803504 -174611738 + L2 LINE L2 2830 3091 -181 433 275 19 50 chr6 7803661 7803821 -174611421 + L2 LINE L2 3158 3312 -1 2007 129 26 13 chr6 7804036 7804338 -174610904 + AluSg SINE Alu 1 306 -4 368 164 0 0 chr6 7804704 7804765 -174610477 + MER41A LTR ERV1 400 460 -94 24 32 0 0 chr6 7805025 7805056 -174610186 + AT_rich Low_complexity Low_complexity 1 31 0 682 228 7 13 chr6 7805954 7806103 -174609139 - MIR SINE MIR -59 203 56 2011 212 98 4 chr6 7806363 7806840 -174608402 - MER119 DNA MER1_type -3 580 59 2287 103 0 0 chr6 7806934 7807226 -174608016 + AluSx SINE Alu 5 296 -16 737 258 159 50 chr6 7807281 7807687 -174607555 - L1ME LINE L1 -354 5808 5447 2301 137 23 35 chr6 7807687 7808082 -174607160 + MLT1B LTR MaLR 1 390 0 737 258 159 50 chr6 7808082 7808112 -174607130 - L1ME LINE L1 -715 5447 5422 2231 103 14 0 chr6 7808112 7808404 -174606838 - AluSx SINE Alu -16 296 1 737 258 159 50 chr6 7808404 7808417 -174606825 - L1ME LINE L1 -740 5422 5412 2349 81 7 0 chr6 7808417 7808713 -174606529 - AluY SINE Alu -13 298 1 737 258 159 50 chr6 7808713 7808888 -174606354 - L1ME LINE L1 -750 5412 5257 2182 95 3 3 chr6 7808888 7809172 -174606070 - AluSg SINE Alu -22 288 5 1585 138 8 8 chr6 7809173 7809420 -174605822 + AluSg SINE Alu 55 301 -9 737 258 159 50 chr6 7809420 7809445 -174605797 - L1ME LINE L1 -905 5257 5236 1911 140 74 37 chr6 7809445 7809796 -174605446 + THE1B LTR MaLR 1 364 0 737 258 159 50 chr6 7809796 7810602 -174604640 - L1ME LINE L1 -926 5236 4164 1853 59 0 0 chr6 7810602 7810821 -174604421 - AluY SINE Alu -47 264 46 737 258 159 50 chr6 7810821 7810839 -174604403 - L1ME LINE L1 -1998 4164 4149 809 182 8 0 chr6 7810974 7811106 -174604136 + FLAM_C SINE Alu 1 133 0 1433 185 65 7 chr6 7811209 7811485 -174603757 - AluJb SINE Alu -18 294 3 2342 98 3 0 chr6 7811487 7811794 -174603448 - AluSp SINE Alu -5 308 1 814 229 13 13 chr6 7811799 7811956 -174603286 - FRAM SINE Alu -19 157 1 537 224 34 142 chr6 7811999 7812204 -174603038 + MIR SINE MIR 45 227 -35 1353 126 0 0 chr6 7813104 7813294 -174601948 - AluSg/x SINE Alu -40 272 83 2421 50 3 47 chr6 7814227 7814545 -174600697 + AluY SINE Alu 1 304 -7 456 227 70 64 chr6 7816865 7817037 -174598205 - L2 LINE L2 -7 3306 3134 868 281 191 11 chr6 7817114 7817558 -174597684 - L2 LINE L2 -337 2977 2454 499 337 122 25 chr6 7817677 7817956 -174597286 - L2 LINE L2 -9 3263 2958 948 157 0 76 chr6 7818098 7818296 -174596946 + MER20 DNA MER1_type 1 183 -36 718 238 85 68 chr6 7818579 7818860 -174596382 + MER102b DNA MER1_type 33 318 -23 890 147 61 37 chr6 7819006 7819169 -174596073 - FRAM SINE Alu -5 171 5 27 62 0 0 chr6 7819462 7819510 -174595732 + AT_rich Low_complexity Low_complexity 1 48 0 209 266 0 0 chr6 7819659 7819723 -174595519 + (ATG)n Simple_repeat Simple_repeat 3 66 0 384 264 155 19 chr6 7820042 7820197 -174595045 + L1ME4a LINE L1 5323 5478 -643 405 280 88 16 chr6 7820290 7820472 -174594770 + L1ME4a LINE L1 5671 5865 -256 2332 96 0 0 chr6 7820641 7820944 -174594298 + AluSx SINE Alu 1 303 -9 2326 115 3 0 chr6 7821721 7822025 -174593217 + AluSp SINE Alu 1 305 -8 2044 146 7 0 chr6 7822203 7822497 -174592745 - AluJb SINE Alu -16 296 1 252 0 0 0 chr6 7823382 7823410 -174591832 + (TG)n Simple_repeat Simple_repeat 2 29 0 2166 131 0 0 chr6 7823471 7823777 -174591465 + AluSx SINE Alu 1 306 -6 2554 61 0 3 chr6 7824350 7824661 -174590581 + AluY SINE Alu 2 311 0 486 200 0 20 chr6 7824723 7824823 -174590419 + FLAM_A SINE Alu 41 138 -4 636 243 153 16 chr6 7826685 7826874 -174588368 - MER58C DNA MER1_type 0 215 1 1272 155 120 11 chr6 7826882 7827166 -174588076 + MER33 DNA MER1_type 1 315 -9 1873 149 42 0 chr6 7828179 7828468 -174586774 - AluSx SINE Alu -11 301 1 1602 151 102 31 chr6 7828572 7828897 -174586345 - MER7A DNA MER2_type 0 346 1 291 327 9 19 chr6 7829640 7829747 -174585495 - L2 LINE L2 -497 2817 2712 543 215 74 0 chr6 7830139 7830302 -174584940 + MER104 DNA MER2_type 4 178 -2 1265 174 4 8 chr6 7831885 7832120 -174583122 - MER46A DNA MER2_type 0 236 3 234 91 0 0 chr6 7832267 7832300 -174582942 + (T)n Simple_repeat Simple_repeat 1 33 0 213 121 0 0 chr6 7832440 7832473 -174582769 + (TTTTC)n Simple_repeat Simple_repeat 2 34 0 1977 168 3 0 chr6 7832476 7832786 -174582456 - AluJb SINE Alu -1 311 1 4738 141 59 50 chr6 7832810 7833152 -174582090 - L1MB3 LINE L1 -1 6182 5845 1966 137 7 7 chr6 7833152 7833451 -174581791 - AluSx SINE Alu -13 299 1 4738 141 59 50 chr6 7833451 7833977 -174581265 - L1MB3 LINE L1 -338 5845 5307 1349 209 10 39 chr6 7833977 7834283 -174580959 - AluJo SINE Alu -15 297 1 4738 141 59 50 chr6 7834283 7834474 -174580768 - L1MB3 LINE L1 -876 5307 5119 2086 136 3 3 chr6 7834531 7834826 -174580416 - AluSx SINE Alu -17 295 1 2402 97 3 0 chr6 7835199 7835510 -174579732 - AluSp SINE Alu -1 312 1 885 134 20 7 chr6 7835512 7835661 -174579581 - AluYa8 SINE Alu -10 300 150 308 95 0 0 chr6 7835661 7835703 -174579539 - AluSq SINE Alu -129 174 133 513 0 0 0 chr6 7835703 7835760 -174579482 + (TG)n Simple_repeat Simple_repeat 2 58 0 1948 127 4 0 chr6 7835760 7836028 -174579214 - AluSg SINE Alu -28 282 14 303 29 0 0 chr6 7836028 7836062 -174579180 - AluY SINE Alu -252 50 17 1148 133 5 51 chr6 7836062 7836257 -174578985 - AluSx SINE Alu -124 188 3 180 0 0 0 chr6 7836285 7836305 -174578937 + (A)n Simple_repeat Simple_repeat 1 20 0 1486 165 64 32 chr6 7838269 7838568 -174576674 - MER58D DNA MER1_type -2050 370 82 2288 105 0 0 chr6 7838568 7838862 -174576380 + AluSx SINE Alu 1 294 -18 2211 99 14 3 chr6 7838862 7839156 -174576086 + AluSx SINE Alu 1 297 -15 1486 165 64 32 chr6 7839156 7839200 -174576042 - MER58D DNA MER1_type -2337 83 15 30 77 0 0 chr6 7839503 7839568 -174575674 + AT_rich Low_complexity Low_complexity 1 65 0 2426 202 7 0 chr6 7841232 7841657 -174573585 + Tigger7 DNA MER2_type 2 429 -304 1393 162 131 4 chr6 7841657 7841916 -174573326 + AluJo SINE Alu 16 307 -5 2428 130 46 23 chr6 7841916 7842307 -174572935 + Tigger7 DNA MER2_type 440 839 -1648 1560 136 62 0 chr6 7842306 7842548 -174572694 + Tigger7 DNA MER2_type 2227 2483 -4 * 2523 51 14 0 chr6 7842856 7843150 -174572092 + AluY SINE Alu 1 298 -13 1013 164 0 0 chr6 7843163 7843322 -174571920 + FRAM SINE Alu 1 159 -17 1976 137 3 22 chr6 7843455 7843769 -174571473 + AluJb SINE Alu 5 312 0 22 0 0 0 chr6 7844184 7844206 -174571036 + AT_rich Low_complexity Low_complexity 1 22 0 988 235 256 13 chr6 7844538 7845301 -174569941 - L2 LINE L2 0 3313 2369 2243 107 13 0 chr6 7846439 7846739 -174568503 - AluSx SINE Alu -8 304 1 198 219 24 0 chr6 7847640 7847681 -174567561 + MIR SINE MIR 141 182 -80 481 253 45 11 chr6 7847806 7847984 -174567258 + L1MC5 LINE L1 7260 7443 -518 2349 105 0 0 chr6 7847998 7848293 -174566949 + AluSg SINE Alu 1 295 -15 658 209 90 65 chr6 7848336 7848690 -174566552 + L1MC5 LINE L1 7554 7916 -45 665 138 16 16 chr6 7848711 7848834 -174566408 - AluJo/FRAM SINE Alu -25 287 165 392 97 113 0 chr6 7848834 7848896 -174566346 - AluJ/FLAM SINE Alu -233 69 1 2537 84 0 0 chr6 7849236 7849547 -174565695 + AluSx SINE Alu 1 311 -1 484 219 47 111 chr6 7849553 7849850 -174565392 + L2 LINE L2 3030 3307 -6 2195 100 43 0 chr6 7850255 7850554 -174564688 + AluSx SINE Alu 1 312 0 213 276 79 0 chr6 7850960 7851036 -174564206 + MIR3 SINE MIR 76 157 -51 2327 107 0 0 chr6 7851173 7851482 -174563760 + AluY SINE Alu 1 309 -2 1823 90 13 87 chr6 7851800 7852099 -174563143 - AluSq SINE Alu -6 307 31 8970 157 42 30 chr6 7852099 7853775 -174561467 + pTR5 LTR ERV1 743 2438 0 1543 183 39 0 chr6 7853926 7854211 -174561031 + AluSq SINE Alu 1 296 -17 255 159 0 0 chr6 7854301 7854345 -174560897 + MIR SINE MIR 101 144 -64 752 184 160 10 chr6 7854379 7854585 -174560657 + MER33 DNA MER1_type 1 237 -87 1663 164 29 0 chr6 7854711 7854986 -174560256 + AluJo SINE Alu 1 283 -29 794 163 81 73 chr6 7855353 7855368 -174559874 - L1MA4 LINE L1 -2 6298 6285 2327 96 0 3 chr6 7855368 7855661 -174559581 + AluSg SINE Alu 1 292 -18 794 163 81 73 chr6 7855661 7855770 -174559472 - L1MA4 LINE L1 -15 6285 6178 2001 130 0 42 chr6 7855770 7856077 -174559165 + AluSx SINE Alu 1 294 -18 794 163 81 73 chr6 7856077 7856197 -174559045 - L1MA4 LINE L1 -122 6178 6051 2161 101 30 7 chr6 7856678 7856974 -174558268 - AluSq SINE Alu -10 303 1 22 0 0 0 chr6 7857085 7857107 -174558135 + AT_rich Low_complexity Low_complexity 1 22 0 1522 184 46 23 chr6 7857135 7857440 -174557802 + AluJo SINE Alu 1 312 0 197 244 122 24 chr6 7857723 7857805 -174557437 + MIR3 SINE MIR 73 162 -46 2110 114 7 3 chr6 7860153 7860442 -174554800 - AluSx SINE Alu -22 290 1 918 98 53 0 chr6 7860512 7860644 -174554598 + MER85 DNA T2_type 1 139 0 1742 173 23 23 chr6 7860699 7861005 -174554237 - AluJb SINE Alu -6 306 1 233 213 0 0 chr6 7861336 7861383 -174553859 + (CA)n Simple_repeat Simple_repeat 2 48 0 3168 142 95 2 chr6 7861665 7862701 -174552541 + L1M3f LINE L1 84 1232 -4096 2342 112 0 10 chr6 7862702 7863014 -174552228 + AluSx SINE Alu 1 309 -3 2251 116 3 0 chr6 7863169 7863470 -174551772 - AluSx SINE Alu -10 302 1 1418 164 38 57 chr6 7863699 7864126 -174551116 + AluJb SINE Alu 1 448 -20 213 39 0 0 chr6 7864126 7864152 -174551090 + (GGGGA)n Simple_repeat Simple_repeat 2 27 0 1418 164 38 57 chr6 7864152 7864173 -174551069 + AluJb SINE Alu 448 468 0 2052 118 11 0 chr6 7864288 7864598 -174550644 + AluSp SINE Alu 1 313 0 2200 116 7 23 chr6 7864948 7865258 -174549984 - AluSg SINE Alu -5 305 1 1746 172 3 20 chr6 7865598 7865895 -174549347 - AluJo SINE Alu -15 297 6 432 239 109 16 chr6 7865937 7866121 -174549121 - HAL1 LINE L1 -69 2438 2238 522 179 9 9 chr6 7866174 7866280 -174548962 - FLAM_A SINE Alu -9 133 28 331 321 131 25 chr6 7866288 7866684 -174548558 - HAL1 LINE L1 -345 2162 1725 287 178 131 99 chr6 7866654 7866791 -174548451 - HAL1 LINE L1 -1330 1177 1031 * 2443 70 0 10 chr6 7866791 7867103 -174548139 + AluSc SINE Alu 1 309 0 287 178 131 99 chr6 7867103 7867156 -174548086 - HAL1 LINE L1 -1476 1031 981 357 176 0 44 chr6 7867165 7867233 -174548009 + MER74C LTR ERVL 6 70 -390 401 220 115 55 chr6 7867352 7867552 -174547690 - HAL1 LINE L1 -1940 567 356 7457 169 93 39 chr6 7867592 7869201 -174546041 + pTR5 LTR ERV1 743 2438 0 348 113 72 124 chr6 7869782 7869860 -174545382 - MER97c DNA MER1_type? -915 175 101 1681 168 0 14 chr6 7869860 7870151 -174545091 - AluJb SINE Alu -25 287 1 348 113 72 124 chr6 7870151 7870169 -174545073 - MER97c DNA MER1_type? -989 101 84 181 273 0 0 chr6 7870402 7870446 -174544796 - L2 LINE L2 -2 3311 3268 2089 110 14 3 chr6 7870489 7870780 -174544462 + AluSq SINE Alu 1 294 -19 2271 79 0 40 chr6 7870780 7871084 -174544158 + AluY SINE Alu 1 292 -19 2129 115 3 16 chr6 7871127 7871441 -174543801 - AluSx SINE Alu -2 310 1 276 361 57 0 chr6 7871871 7871993 -174543249 - L2 LINE L2 -564 2750 2622 2057 135 21 12 chr6 7873064 7873398 -174541844 - MER1B DNA MER1_type 0 337 1 208 216 0 39 chr6 7873593 7873644 -174541598 - L2 LINE L2 -4 3309 3261 2254 65 135 29 chr6 7873873 7873984 -174541258 - MER51B LTR ERV1 0 377 279 2259 67 0 51 chr6 7873984 7874299 -174540943 + AluY SINE Alu 1 299 -12 2254 65 135 29 chr6 7874299 7874528 -174540714 - MER51B LTR ERV1 -98 279 1 232 195 0 0 chr6 7874756 7874797 -174540445 + L2 LINE L2 3226 3266 -6 180 323 157 15 chr6 7874803 7875134 -174540108 - L2 LINE L2 -341 2973 2596 2163 103 0 22 chr6 7875209 7875528 -174539714 + AluSq SINE Alu 1 312 -1 1691 179 33 0 chr6 7875572 7875874 -174539368 - AluJo SINE Alu 0 312 1 2231 99 0 0 chr6 7876205 7876507 -174538735 - AluSg SINE Alu -7 303 2 21 0 0 0 chr6 7876625 7876646 -174538596 + AT_rich Low_complexity Low_complexity 1 21 0 189 0 0 0 chr6 7876957 7876978 -174538264 + (CAG)n Simple_repeat Simple_repeat 1 21 0 2280 91 10 0 chr6 7877095 7877404 -174537838 - AluSx SINE Alu 0 312 1 1811 117 20 34 chr6 7877574 7877872 -174537370 - AluSx SINE Alu -18 294 1 2229 181 48 9 chr6 7877874 7878316 -174536926 + L1MB7 LINE L1 5706 6164 -20 249 332 132 20 chr6 7878351 7878700 -174536542 - L1MC4a LINE L1 -1602 6206 5819 1703 144 6 52 chr6 7878763 7878873 -174536369 - AluJo SINE Alu 0 312 198 4585 126 96 21 chr6 7878873 7879637 -174535605 + LTR1B LTR ERV1 4 824 -2 1703 144 6 52 chr6 7879637 7879853 -174535389 - AluJo SINE Alu -114 198 1 926 254 132 46 chr6 7879854 7880178 -174535064 - L1MC4a LINE L1 -2042 5766 5389 2130 114 3 0 chr6 7880178 7880484 -174534758 - AluSx SINE Alu -5 307 1 926 254 132 46 chr6 7880484 7880620 -174534622 - L1MC4a LINE L1 -2419 5389 5266 1698 146 28 24 chr6 7880752 7881040 -174534202 + AluJb SINE Alu 8 296 -16 2516 182 97 10 chr6 7881438 7881932 -174533310 + MLT1F1 LTR MaLR 20 556 -11 2144 94 3 0 chr6 7882063 7882351 -174532891 + AluSq SINE Alu 1 289 -24 1586 167 44 14 chr6 7882369 7882662 -174532580 - AluJb SINE Alu -10 302 1 7706 143 113 69 chr6 7882672 7884297 -174530945 + pTR5 LTR ERV1 742 2438 0 2766 189 86 18 chr6 7884335 7884906 -174530336 + LTR1B LTR ERV1 1 610 -216 2016 122 3 0 chr6 7884913 7885199 -174530043 + AluSq SINE Alu 7 293 -20 817 226 66 9 chr6 7885207 7885419 -174529823 - MER67B LTR ERV1 -437 224 1 2133 143 74 25 chr6 7885424 7885702 -174529540 - L1MB3 LINE L1 -69 6114 5806 2184 95 3 0 chr6 7885702 7885996 -174529246 + AluSg SINE Alu 2 296 -14 2133 143 74 25 chr6 7885996 7886152 -174529090 - L1MB3 LINE L1 -377 5806 5659 1573 137 96 0 chr6 7886152 7886422 -174528820 - AluJo SINE Alu -8 304 9 495 291 145 42 chr6 7886713 7886967 -174528275 + L2 LINE L2 2917 3220 -93 1287 182 164 33 chr6 7886967 7887015 -174528227 - MER93b LTR ERV1 0 373 333 2291 94 0 0 chr6 7887015 7887314 -174527928 + AluSc SINE Alu 1 299 -10 1287 182 164 33 chr6 7887314 7887595 -174527647 - MER93b LTR ERV1 -40 333 1 495 291 145 42 chr6 7887595 7887698 -174527544 + L2 LINE L2 3220 3311 -2 32 0 0 0 chr6 7888357 7888389 -174526853 + AT_rich Low_complexity Low_complexity 1 32 0 769 161 31 0 chr6 7888409 7888539 -174526703 + AluJb SINE Alu 179 312 0 668 262 4 152 chr6 7888539 7888687 -174526555 + L1MC2 LINE L1 5672 5840 -340 1661 140 16 23 chr6 7888687 7888822 -174526420 + AluJo SINE Alu 1 135 -177 2087 130 0 0 chr6 7888822 7889114 -174526128 + AluSx SINE Alu 1 292 -20 1661 140 16 23 chr6 7889114 7889286 -174525956 + AluJo SINE Alu 135 306 -6 668 262 4 152 chr6 7889286 7889308 -174525934 + L1MC2 LINE L1 5840 5864 -316 1011 143 15 35 chr6 7889308 7889511 -174525731 + L1MB3 LINE L1 5983 6181 -2 2171 107 19 29 chr6 7889511 7889826 -174525416 + L1MB3 LINE L1 5812 6131 -52 1844 119 40 0 chr6 7889826 7890104 -174525138 + AluSg SINE Alu 1 289 -21 2171 107 19 29 chr6 7890104 7890156 -174525086 + L1MB3 LINE L1 6131 6182 -1 668 262 4 152 chr6 7890156 7890182 -174525060 + L1MC2 LINE L1 5793 5821 -359 330 209 86 29 chr6 7890568 7890673 -174524569 + LTR68 LTR ERV1 615 725 -15 391 284 30 12 chr6 7890737 7890819 -174524423 + L1P5 LINE L1 5276 5355 -796 1867 144 24 0 chr6 7890819 7891111 -174524131 + AluSx SINE Alu 1 299 -13 391 284 30 12 chr6 7891111 7891197 -174524045 + L1P5 LINE L1 5355 5447 -704 1305 179 0 60 chr6 7891286 7891571 -174523671 + L1MB8 LINE L1 5910 6177 -1 1229 113 88 29 chr6 7891579 7891819 -174523423 + L1MA9 LINE L1 6059 6312 0 1640 168 41 3 chr6 7891833 7892125 -174523117 + AluJb SINE Alu 2 304 -8 340 219 23 76 chr6 7892164 7892294 -174522948 + L1ME LINE L1 5455 5578 -543 427 270 103 17 chr6 7892349 7892523 -174522719 + L1ME LINE L1 5581 5769 -393 576 269 32 56 chr6 7892632 7892759 -174522483 + L1ME3A LINE L1 5706 5826 -344 2312 83 0 0 chr6 7892759 7893059 -174522183 + AluSx SINE Alu 1 300 -12 576 269 32 56 chr6 7893059 7893180 -174522062 + L1ME3A LINE L1 5826 5948 -222 462 232 168 0 chr6 7894457 7894609 -174520633 + MER5A DNA MER1_type 4 186 -3 1359 146 0 53 chr6 7895529 7895636 -174519606 - AluJo SINE Alu -76 236 125 2343 69 10 3 chr6 7895636 7895941 -174519301 - AluSx SINE Alu 0 312 6 1359 146 0 53 chr6 7895941 7896080 -174519162 - AluJo SINE Alu -187 125 3 333 234 76 21 chr6 7896134 7896279 -174518963 - L1ME4a LINE L1 -2 6119 5967 2156 96 3 3 chr6 7896673 7896964 -174518278 - AluSp SINE Alu -22 291 1 193 128 0 77 chr6 7897038 7897077 -174518165 + MIR SINE MIR 217 252 -10 491 318 74 9 chr6 7897455 7897672 -174517570 + L2 LINE L2 1912 2142 -1172 3133 142 126 50 chr6 7897718 7898246 -174516996 - L1MB3 LINE L1 -14 6169 5683 1201 206 53 14 chr6 7898246 7898527 -174516715 - AluJo SINE Alu -20 292 1 1660 103 4 4 chr6 7898533 7898765 -174516477 - AluSc SINE Alu -16 293 62 3133 142 126 50 chr6 7898765 7898896 -174516346 - L1MB3 LINE L1 -504 5679 5452 1776 177 0 0 chr6 7898914 7899214 -174516028 - AluSx SINE Alu -12 300 1 2209 107 3 0 chr6 7899746 7900055 -174515187 + AluSx SINE Alu 1 310 -2 244 250 0 0 chr6 7900280 7900336 -174514906 + A-rich Low_complexity Low_complexity 1 56 0 437 276 103 61 chr6 7900431 7900913 -174514329 - L2 LINE L2 -171 3101 2585 416 223 0 138 chr6 7900946 7901076 -174514166 - L2 LINE L2 0 3272 3161 771 157 8 0 chr6 7901102 7901223 -174514019 - MSTD LTR MaLR -2 394 273 2034 104 0 52 chr6 7901263 7901571 -174513671 + AluSx SINE Alu 1 292 -20 342 107 0 0 chr6 7901571 7901627 -174513615 + (TCTA)n Simple_repeat Simple_repeat 2 57 0 873 150 7 0 chr6 7901653 7901793 -174513449 - AluJb SINE Alu -171 141 1 726 211 173 46 chr6 7901795 7901930 -174513312 - MSTD LTR MaLR -129 267 150 1509 173 0 22 chr6 7901930 7902207 -174513035 - AluJo SINE Alu -31 281 11 726 211 173 46 chr6 7902207 7902308 -174512934 - MSTD LTR MaLR -246 150 1 415 338 77 5 chr6 7902427 7902649 -174512593 - L2 LINE L2 -225 3047 2810 726 306 197 22 chr6 7902725 7903369 -174511873 - L2 LINE L2 -746 2568 1812 190 154 0 77 chr6 7903684 7903723 -174511519 - MIR SINE MIR -10 252 217 399 210 68 49 chr6 7904183 7904204 -174511038 + L1ME4a LINE L1 5957 5976 -145 2105 107 0 3 chr6 7904204 7904503 -174510739 + AluSc SINE Alu 1 298 -11 399 210 68 49 chr6 7904503 7904643 -174510599 + L1ME4a LINE L1 5976 6121 0 1588 165 0 0 chr6 7904695 7904961 -174510281 + AluJo SINE Alu 2 267 -45 2080 101 3 13 chr6 7905458 7905756 -174509486 - AluSq SINE Alu -18 295 1 2217 72 23 3 chr6 7906078 7906382 -174508860 + AluY SINE Alu 1 310 -1 240 35 0 0 chr6 7906920 7906949 -174508293 + (TTTTC)n Simple_repeat Simple_repeat 2 30 0 2343 70 0 3 chr6 7907050 7907352 -174507890 - AluY SINE Alu -10 301 1 288 102 0 0 chr6 7907475 7907524 -174507718 + (A)n Simple_repeat Simple_repeat 1 49 0 1870 119 0 51 chr6 7909274 7909586 -174505656 + AluSx SINE Alu 1 296 -16 2361 230 51 24 chr6 7909842 7910581 -174504661 - L1M4 LINE L1 -1267 4879 4121 428 174 0 54 chr6 7910581 7910673 -174504569 - MER6 DNA MER2_type 0 865 58 988 162 18 0 chr6 7910687 7910854 -174504388 - AluJo SINE Alu -142 170 1 509 167 29 29 chr6 7910859 7910961 -174504281 + MER6 DNA MER2_type 43 865 0 1439 202 0 73 chr6 7910961 7911058 -174504184 - L1M4 LINE L1 -2024 4122 4020 2166 148 42 0 chr6 7911058 7911436 -174503806 - L1MB3 LINE L1 -7 6176 5783 1439 202 0 73 chr6 7911436 7911710 -174503532 - L1M4 LINE L1 -2126 4020 3778 * 1938 186 20 18 chr6 7911706 7912105 -174503137 - L1MB3 LINE L1 -1091 5055 4656 254 250 16 0 chr6 7912166 7912210 -174503032 + MER5B DNA MER1_type 1 48 -130 2198 117 0 0 chr6 7912210 7912517 -174502725 - AluSx SINE Alu -5 307 1 254 250 16 0 chr6 7912517 7912536 -174502706 + MER5B DNA MER1_type 48 65 -113 1892 115 59 3 chr6 7912623 7912911 -174502331 - AluSx SINE Alu -8 304 1 1911 139 0 32 chr6 7912937 7913253 -174501989 - AluSx SINE Alu 0 312 7 393 276 41 8 chr6 7913596 7913719 -174501523 + MIR SINE MIR 119 245 -17 1998 98 39 3 chr6 7914282 7914567 -174500675 - AluSx SINE Alu -17 295 1 1913 144 0 10 chr6 7914669 7914975 -174500267 + AluJb SINE Alu 1 303 -9 1662 177 0 7 chr6 7915117 7915411 -174499831 - AluJo SINE Alu -20 292 1 262 351 106 46 chr6 7915485 7915833 -174499409 + L2 LINE L2 2846 3214 -58 1792 164 0 6 chr6 7916502 7916813 -174498429 + AluJo SINE Alu 1 309 -3 217 278 37 0 chr6 7916997 7917051 -174498191 - L2 LINE L2 -9 3263 3208 4667 176 36 14 chr6 7917811 7919350 -174495892 - L1MB4 LINE L1 0 6180 4611 226 308 94 26 chr6 7919773 7919890 -174495352 - L2 LINE L2 -6 3307 3183 303 268 60 66 chr6 7920479 7920662 -174494580 + L2 LINE L2 2571 2752 -562 2533 133 3 8 chr6 7920830 7921221 -174494021 + MLT1B LTR MaLR 2 567 0 304 284 45 8 chr6 7921277 7921411 -174493831 - L1MC4a LINE L1 -1878 5930 5792 2339 107 0 0 chr6 7921426 7921724 -174493518 - AluSx SINE Alu -14 298 1 247 275 37 64 chr6 7921848 7921957 -174493285 - MIR3 SINE MIR -14 194 89 250 286 57 0 chr6 7922140 7922210 -174493032 - MIR3 SINE MIR -23 185 112 231 114 227 0 chr6 7922238 7922282 -174492960 - L1MB5 LINE L1 -240 5934 5881 37 23 0 0 chr6 7922548 7922592 -174492650 + AT_rich Low_complexity Low_complexity 1 44 0 837 123 0 16 chr6 7922593 7922715 -174492527 - FLAM_C SINE Alu -22 121 2 238 285 65 75 chr6 7922880 7923080 -174492162 - L2 LINE L2 -108 3164 2967 22 0 0 0 chr6 7923463 7923485 -174491757 + AT_rich Low_complexity Low_complexity 1 22 0 1822 164 49 9 chr6 7923549 7923796 -174491446 + MER46B DNA MER2_type 14 154 -2577 16141 109 20 21 chr6 7923796 7926216 -174489026 - Tigger1 DNA MER2_type 0 2418 1 1822 164 49 9 chr6 7926216 7926297 -174488945 + MER46B DNA MER2_type 154 230 -6 465 19 0 0 chr6 7926297 7926351 -174488891 + (TG)n Simple_repeat Simple_repeat 1 54 0 1194 182 11 58 chr6 7926367 7926642 -174488600 - AluJo SINE Alu -16 296 35 1870 112 6 98 chr6 7927111 7927449 -174487793 + AluSp SINE Alu 1 307 -6 216 321 98 16 chr6 7927692 7927938 -174487304 - L2 LINE L2 -665 2649 2384 2369 97 0 0 chr6 7928269 7928568 -174486674 + AluSx SINE Alu 1 299 -13 2320 106 3 0 chr6 7928569 7928881 -174486361 + AluSp SINE Alu 1 313 0 1467 161 101 4 chr6 7930174 7930441 -174484801 - AluJo SINE Alu -13 299 7 2155 119 27 0 chr6 7931043 7931336 -174483906 + AluSx SINE Alu 1 301 -11 423 298 53 0 chr6 7931338 7931452 -174483790 + MIR3 SINE MIR 41 160 -48 541 224 36 73 chr6 7931452 7931644 -174483598 + MER63A DNA MER1_type 1 185 -25 3673 163 18 24 chr6 7933135 7933332 -174481910 + L1MB3 LINE L1 5476 5673 -510 2251 102 0 37 chr6 7933332 7933476 -174481766 + AluSx SINE Alu 1 149 -163 2209 113 3 0 chr6 7933476 7933767 -174481475 + AluSq SINE Alu 1 292 -21 2251 102 0 37 chr6 7933767 7933944 -174481298 + AluSx SINE Alu 149 310 -2 3673 163 18 24 chr6 7933944 7934458 -174480784 + L1MB3 LINE L1 5673 6183 0 1838 168 3 10 chr6 7934534 7934838 -174480404 - AluJb SINE Alu -10 302 1 2117 145 0 3 chr6 7934919 7935223 -174480019 + AluSx SINE Alu 9 311 -1 253 136 34 0 chr6 7935223 7935277 -174479965 + GA-rich Low_complexity Low_complexity 9 64 0 505 292 24 0 chr6 7935277 7935445 -174479797 + MIR SINE MIR 84 255 -7 899 146 0 0 chr6 7935445 7935575 -174479667 + FLAM_C SINE Alu 1 130 -3 1043 146 59 64 chr6 7936297 7936517 -174478725 + MER20 DNA MER1_type 1 219 0 2333 105 0 0 chr6 7936651 7936947 -174478295 + AluSx SINE Alu 2 297 -15 635 128 0 149 chr6 7937009 7937150 -174478092 - FLAM_C SINE Alu 0 143 24 730 264 28 14 chr6 7937641 7937857 -174477385 + MIR SINE MIR 42 260 -2 253 270 123 49 chr6 7938347 7938401 -174476841 + MER5B DNA MER1_type 1 50 -128 1385 165 126 8 chr6 7938401 7938662 -174476580 + AluJb SINE Alu 1 292 -20 253 270 123 49 chr6 7938662 7938770 -174476472 + MER5B DNA MER1_type 50 175 -3 200 267 33 0 chr6 7938786 7938846 -174476396 - MER5A DNA MER1_type 0 189 128 1979 150 3 3 chr6 7939416 7939710 -174475532 - AluJo SINE Alu -18 294 1 270 0 0 0 chr6 7940378 7940408 -174474834 + (CA)n Simple_repeat Simple_repeat 1 30 0 465 181 62 42 chr6 7940427 7940571 -174474671 - L1ME4a LINE L1 -1 6120 5974 2534 146 29 77 chr6 7940923 7941402 -174473840 - LTR32 LTR ERVL 0 471 16 775 224 29 6 chr6 7941729 7941903 -174473339 + MER5B DNA MER1_type 1 178 0 533 274 5 48 chr6 7941911 7942097 -174473145 + MER5B DNA MER1_type 1 178 0 252 312 18 37 chr6 7942207 7942316 -174472926 + MIR3 SINE MIR 12 118 -90 180 0 0 0 chr6 7942410 7942430 -174472812 + (TTTTTG)n Simple_repeat Simple_repeat 4 23 0 2394 77 3 3 chr6 7944372 7944670 -174470572 - AluSq SINE Alu -15 298 1 1705 165 43 16 chr6 7945314 7945617 -174469625 - AluJb SINE Alu -1 311 1 843 147 0 52 chr6 7946660 7946796 -174468446 - AluJb SINE Alu -181 131 3 1887 148 10 7 chr6 7947557 7947854 -174467388 + AluJo SINE Alu 3 300 -12 714 207 59 68 chr6 7947877 7948064 -174467178 - L1ME3A LINE L1 -5 6165 5979 2162 141 3 0 chr6 7948064 7948369 -174466873 - AluSx SINE Alu -6 306 1 714 207 59 68 chr6 7948369 7948418 -174466824 - L1ME3A LINE L1 -191 5979 5931 879 150 15 0 chr6 7949190 7949323 -174465919 - FAM SINE Alu -43 142 8 273 57 0 0 chr6 7949381 7949416 -174465826 + (TTCA)n Simple_repeat Simple_repeat 1 35 0 2015 123 36 26 chr6 7950108 7950417 -174464825 + AluSx SINE Alu 1 312 0 2414 69 0 7 chr6 7951376 7951667 -174463575 - AluSc SINE Alu -20 289 1 183 129 0 0 chr6 7951802 7951833 -174463409 + (GGGAGA)n Simple_repeat Simple_repeat 5 35 0 412 314 24 39 chr6 7951902 7952109 -174463133 + MIR SINE MIR 59 262 0 262 307 71 55 chr6 7952105 7952232 -174463010 + L2 LINE L2 3139 3267 -5 * 2217 121 0 19 chr6 7952757 7953071 -174462171 + AluSq SINE Alu 1 308 -5 231 61 0 0 chr6 7953200 7953233 -174462009 + (T)n Simple_repeat Simple_repeat 1 33 0 598 292 56 64 chr6 7954206 7954566 -174460676 + L1ME3 LINE L1 5526 5882 -280 1956 148 23 0 chr6 7954570 7954875 -174460367 + AluSx SINE Alu 1 312 0 363 167 211 0 chr6 7955563 7955653 -174459589 - L1ME4a LINE L1 -40 6081 5973 299 250 180 57 chr6 7955716 7955944 -174459298 + MIR SINE MIR 7 262 0 1820 254 66 21 chr6 7956422 7957018 -174458224 + HAL1 LINE L1 1464 2089 -418 2123 99 3 78 chr6 7957018 7957352 -174457890 + AluSq SINE Alu 1 309 -4 2649 138 12 39 chr6 7957382 7957704 -174457538 + L1MB3 LINE L1 5700 6006 -177 1620 151 100 0 chr6 7957704 7957983 -174457259 - AluJb SINE Alu -5 307 1 2649 138 12 39 chr6 7957983 7958153 -174457089 + L1MB3 LINE L1 6006 6179 -4 700 161 110 0 chr6 7959626 7959744 -174455498 + FLAM_C SINE Alu 1 131 -2 380 264 125 50 chr6 7959803 7959894 -174455348 + L1ME4a LINE L1 5796 5879 -242 2456 92 0 0 chr6 7959894 7960200 -174455042 + AluSx SINE Alu 1 306 -6 380 264 125 50 chr6 7960200 7960411 -174454831 + L1ME4a LINE L1 5879 6121 0 265 106 0 45 chr6 7960634 7960700 -174454542 + (CAAAAA)n Simple_repeat Simple_repeat 2 64 0 1613 163 64 0 chr6 7960803 7961086 -174454156 - AluJb SINE Alu -11 301 1 225 0 0 0 chr6 7961477 7961502 -174453740 + (CAAAA)n Simple_repeat Simple_repeat 3 27 0 467 159 57 0 chr6 7961586 7961674 -174453568 + FLAM_A SINE Alu 48 140 -2 1645 197 10 3 chr6 7961762 7962061 -174453181 + AluJo SINE Alu 1 301 -11 1721 150 34 24 chr6 7963036 7963330 -174451912 - AluJb SINE Alu -15 297 1 1843 156 0 3 chr6 7963894 7964200 -174451042 + AluJb SINE Alu 1 305 0 255 103 0 0 chr6 7965138 7965177 -174450065 + (TG)n Simple_repeat Simple_repeat 2 40 0 2197 128 0 0 chr6 7965639 7965937 -174449305 - AluSx SINE Alu -8 304 7 267 286 29 29 chr6 7966182 7966248 -174448994 + Tigger8 DNA MER2_type 153 221 -445 2517 116 3 6 chr6 7966248 7966610 -174448632 + MER46B DNA MER2_type 1 236 0 267 286 29 29 chr6 7966610 7966648 -174448594 + Tigger8 DNA MER2_type 220 257 -409 21 0 0 0 chr6 7967924 7967945 -174447297 + GC_rich Low_complexity Low_complexity 1 21 0 21 36 0 0 chr6 7969212 7969240 -174446002 + GC_rich Low_complexity Low_complexity 1 28 0 198 0 0 0 chr6 7969894 7969916 -174445326 + (T)n Simple_repeat Simple_repeat 1 22 0 195 129 0 0 chr6 7970974 7971005 -174444237 + (T)n Simple_repeat Simple_repeat 1 31 0 181 319 111 28 chr6 7972228 7972372 -174442870 - L2 LINE L2 -193 3079 2924 190 331 140 0 chr6 7972612 7972748 -174442494 - L2 LINE L2 -685 2629 2475 21 57 0 0 chr6 7972871 7972906 -174442336 + AT_rich Low_complexity Low_complexity 1 35 0 429 227 31 10 chr6 7972999 7973096 -174442146 - MIR SINE MIR -116 146 48 1752 161 0 31 chr6 7973922 7974237 -174441005 - AluJo SINE Alu 0 306 1 2284 84 13 0 chr6 7974489 7974788 -174440454 + AluSg SINE Alu 2 304 -6 181 219 0 0 chr6 7975383 7975415 -174439827 - L2 LINE L2 -12 3260 3229 2476 61 3 0 chr6 7975653 7975949 -174439293 - AluSp SINE Alu -16 297 1 250 274 0 0 chr6 7976251 7976302 -174438940 + polypurine Low_complexity Low_complexity 3 53 0 1708 147 0 55 chr6 7976543 7976855 -174438387 - AluJb SINE Alu -17 295 1 22 0 0 0 chr6 7976863 7976885 -174438357 + AT_rich Low_complexity Low_complexity 1 22 0 2176 108 0 10 chr6 7977845 7978142 -174437100 + AluSx SINE Alu 1 294 -18 2313 98 0 23 chr6 7978778 7979085 -174436157 + AluSx SINE Alu 5 304 -8 455 151 54 0 chr6 7979532 7979625 -174435617 - L1MD3 LINE L1 0 7995 7898 786 154 0 16 chr6 7979637 7979760 -174435482 - FLAM_C SINE Alu -12 131 11 396 0 0 0 chr6 7980583 7980627 -174434615 + (CA)n Simple_repeat Simple_repeat 2 45 0 1629 181 3 37 chr6 7981157 7981455 -174433787 - AluJo SINE Alu -24 288 1 926 201 81 54 chr6 7981687 7981946 -174433296 + L1MC4 LINE L1 7655 7920 -122 648 186 55 125 chr6 7981943 7982188 -174433054 + L1MC4 LINE L1 7827 8042 0 * 601 231 36 34 chr6 7983688 7983865 -174431377 - L1MD3 LINE L1 0 7983 6191 2404 109 0 0 chr6 7983898 7984210 -174431032 + AluSx SINE Alu 1 312 0 1662 156 34 30 chr6 7985008 7985303 -174429939 - AluJb SINE Alu -5 307 12 2109 123 0 7 chr6 7987451 7987752 -174427490 - AluSg SINE Alu -11 299 1 974 84 0 63 chr6 7990456 7990598 -174424644 - AluSq/x SINE Alu -180 133 1 1797 110 23 0 chr6 7991058 7991321 -174423921 + L1MA4 LINE L1 6027 6295 -5 2221 84 3 17 chr6 7991363 7991661 -174423581 + AluSx SINE Alu 1 294 -18 2324 87 3 19 chr6 7992187 7992498 -174422744 + L1PA13 LINE L1 5858 6163 0 1172 217 18 5 chr6 7993118 7993339 -174421903 - MER58A DNA MER1_type 0 224 1 2311 102 3 0 chr6 7996053 7996347 -174418895 + AluSp SINE Alu 1 295 -18 21 0 0 0 chr6 7997677 7997698 -174417544 + AT_rich Low_complexity Low_complexity 1 21 0 194 281 16 31 chr6 7998939 7999003 -174416239 - MIR3 SINE MIR -136 72 10 1533 129 141 0 chr6 7999235 7999483 -174415759 - MER7A DNA MER2_type -6 340 60 755 156 170 22 chr6 7999484 7999619 -174415623 + FRAM SINE Alu 1 155 -11 267 173 0 0 chr6 7999619 7999671 -174415571 + (TG)n Simple_repeat Simple_repeat 1 52 0 365 192 14 27 chr6 7999671 7999744 -174415498 - MER7A DNA MER2_type -275 73 2 2109 200 39 33 chr6 7999745 7999797 -174415445 + L1MA9 LINE L1 5782 5832 -480 2512 73 0 3 chr6 7999797 8000100 -174415142 + AluSg SINE Alu 1 302 -8 2109 200 39 33 chr6 8000100 8000537 -174414705 + L1MA9 LINE L1 5832 6274 -38 372 200 118 0 chr6 8001492 8001577 -174413665 + MER103 DNA DNA 4 98 -68 1628 164 52 44 chr6 8002390 8002756 -174412486 - L1MB8 LINE L1 -225 5953 5585 234 0 0 0 chr6 8003822 8003848 -174411394 + (TTTG)n Simple_repeat Simple_repeat 1 26 0 2046 107 4 0 chr6 8003852 8004122 -174411120 - AluSp SINE Alu -36 277 7 219 295 0 26 chr6 8004416 8004494 -174410748 + CT-rich Low_complexity Low_complexity 5 80 0 339 349 16 8 chr6 8005522 8005651 -174409591 - MIR SINE MIR -62 146 17 252 0 0 0 chr6 8008640 8008668 -174406574 + (TG)n Simple_repeat Simple_repeat 2 29 0 229 135 56 0 chr6 8008668 8008757 -174406485 + (TA)n Simple_repeat Simple_repeat 2 95 0 647 204 74 32 chr6 8014159 8014461 -174400781 - MLT1B LTR MaLR 0 390 1 2408 88 0 0 chr6 8014830 8015127 -174400115 + AluSg SINE Alu 1 297 -13 1964 257 137 44 chr6 8015424 8016509 -174398733 + L1MC4 LINE L1 6831 8016 -26 2213 106 0 0 chr6 8017196 8017497 -174397745 + AluJb SINE Alu 1 301 -11 553 213 81 0 chr6 8018199 8018335 -174396907 - MIR SINE MIR -59 203 57 329 297 82 61 chr6 8018616 8018965 -174396277 - L2 LINE L2 -218 3054 2694 * 859 239 5 50 chr6 8018962 8019184 -174396058 - MIR SINE MIR 0 262 51 567 289 186 48 chr6 8019232 8020081 -174395161 - L2 LINE L2 -650 2664 1699 22 0 0 0 chr6 8020176 8020198 -174395044 + AT_rich Low_complexity Low_complexity 1 22 0 526 288 108 9 chr6 8020986 8021198 -174394044 + MIR SINE MIR 1 233 -29 22 0 0 0 chr6 8021875 8021897 -174393345 + AT_rich Low_complexity Low_complexity 1 22 0 314 234 13 26 chr6 8021904 8021981 -174393261 + Tigger5 DNA MER2_type 1 76 -2247 540 103 13 13 chr6 8022030 8022108 -174393134 + Tigger5 DNA MER2_type 2245 2322 -1 2189 108 0 7 chr6 8022482 8022777 -174392465 + AluSx SINE Alu 1 293 -19 359 256 0 0 chr6 8023401 8023479 -174391763 - MIR3 SINE MIR -6 202 125 275 252 98 26 chr6 8023567 8023721 -174391521 - MIR SINE MIR -50 212 45 2251 86 3 10 chr6 8024366 8024667 -174390575 - AluY SINE Alu -12 299 1 2313 107 0 0 chr6 8024713 8025012 -174390230 + AluSx SINE Alu 1 299 -13 378 289 23 47 chr6 8025556 8025684 -174389558 + MIR3 SINE MIR 50 174 -34 819 126 80 7 chr6 8025799 8025950 -174389292 + L1MB3 LINE L1 6019 6180 -3 1835 162 8 64 chr6 8028157 8028351 -174386891 - MER2 DNA MER2_type -1 344 178 2011 156 3 0 chr6 8028351 8028653 -174386589 - AluSx SINE Alu -9 303 1 1835 162 8 64 chr6 8028653 8028816 -174386426 - MER2 DNA MER2_type -167 178 7 281 320 76 41 chr6 8029484 8029681 -174385561 + MIR SINE MIR 3 206 -56 273 141 84 42 chr6 8030437 8030508 -174384734 - L1MC5 LINE L1 -51 7910 7837 659 208 50 134 chr6 8031373 8031745 -174383497 - L1MD3 LINE L1 -1 8035 7709 1033 55 78 0 chr6 8032231 8032359 -174382883 - MER85 DNA T2_type -1 138 1 229 226 19 0 chr6 8033013 8033066 -174382176 + CT-rich Low_complexity Low_complexity 4 57 0 274 303 140 28 chr6 8033221 8033399 -174381843 + L2 LINE L2 2286 2483 -831 1858 163 3 0 chr6 8033537 8033825 -174381417 + AluJb SINE Alu 1 289 -23 459 320 105 31 chr6 8033943 8034237 -174381005 + L2 LINE L2 2871 3186 -86 2285 93 10 3 chr6 8034775 8035085 -174380157 + AluSq SINE Alu 1 312 -1 280 331 54 6 chr6 8035825 8035991 -174379251 + L1ME2 LINE L1 5734 5907 -257 21 0 0 0 chr6 8036181 8036202 -174379040 + AT_rich Low_complexity Low_complexity 1 21 0 325 298 33 26 chr6 8036246 8036263 -174378979 - L1MA10 LINE L1 -1 6333 6317 968 239 95 20 chr6 8036263 8036611 -174378631 - L1ME1 LINE L1 -8 6158 5785 265 209 30 15 chr6 8036946 8037013 -174378229 - MER116 DNA Mariner -6 74 7 206 306 118 0 chr6 8037324 8037409 -174377833 + L2 LINE L2 3126 3220 -52 1394 162 4 9 chr6 8037579 8037808 -174377434 - AluJo SINE Alu -56 256 29 640 139 165 26 chr6 8037857 8037972 -174377270 - FLAM_C SINE Alu -2 131 1 2006 139 27 0 chr6 8039657 8039958 -174375284 + AluJo SINE Alu 1 309 -3 2147 138 55 17 chr6 8040033 8040381 -174374861 + MER46B DNA MER2_type 1 236 0 3469 213 36 46 chr6 8040443 8040996 -174374246 - MER21B LTR ERV1 -31 832 290 2177 112 7 0 chr6 8040996 8041290 -174373952 + AluSx SINE Alu 1 296 -16 3469 213 36 46 chr6 8041290 8041577 -174373665 - MER21B LTR ERV1 -573 290 1 223 322 50 41 chr6 8041584 8041705 -174373537 + L2 LINE L2 2574 2695 -619 1141 88 0 0 chr6 8041866 8042013 -174373229 + AluSg/x SINE Alu 151 297 -13 2382 295 188 22 chr6 8042245 8042866 -174372376 + L2 LINE L2 1500 2017 -1296 2306 78 14 0 chr6 8042866 8043162 -174372080 - AluSq SINE Alu -13 300 1 2382 295 188 22 chr6 8043162 8044096 -174371146 + L2 LINE L2 2017 3313 0 212 261 39 100 chr6 8045407 8045537 -174369705 + L2 LINE L2 1333 1454 -1860 284 339 125 0 chr6 8045582 8045774 -174369468 - MIR SINE MIR -16 246 31 181 300 0 0 chr6 8045776 8045836 -174369406 + L2 LINE L2 3207 3266 -6 906 105 8 0 chr6 8046242 8046366 -174368876 + AluJb SINE Alu 7 131 -181 1566 173 0 91 chr6 8046544 8046902 -174368340 - MLT2D LTR ERVL 0 414 94 462 252 9 0 chr6 8047500 8047611 -174367631 - MLT2D LTR ERVL -302 112 1 248 26 26 51 chr6 8047817 8047856 -174367386 - MER69 DNA AcHobo -42 2484 2447 1511 191 0 29 chr6 8047860 8048133 -174367109 + AluJo SINE Alu 3 267 -45 965 270 9 0 chr6 8048487 8048709 -174366533 - MER58A DNA MER1_type 0 224 1 2213 122 3 0 chr6 8049748 8050052 -174365190 + AluSx SINE Alu 1 305 -7 2727 121 33 51 chr6 8051262 8051715 -174363527 + MER65A LTR ERV1 1 445 0 709 300 58 8 chr6 8051721 8051964 -174363278 - MIR SINE MIR -4 258 4 287 146 18 0 chr6 8052326 8052381 -174362861 + T-rich Low_complexity Low_complexity 4 59 0 1826 166 13 7 chr6 8052383 8052685 -174362557 - AluSx SINE Alu -8 304 1 2051 138 0 16 chr6 8053104 8053422 -174361820 - AluSq SINE Alu 0 313 1 228 341 0 24 chr6 8053431 8053513 -174361729 + LTR67 LTR ERVL 98 177 -380 * 796 269 46 79 chr6 8053449 8053684 -174361558 + MLT1J LTR MaLR 110 326 -185 1517 210 119 44 chr6 8053684 8053751 -174361491 - MLT1C LTR MaLR -4 463 402 1575 66 0 0 chr6 8053751 8053934 -174361308 + AluY SINE Alu 1 183 -128 1517 210 119 44 chr6 8053934 8054295 -174360947 - MLT1C LTR MaLR -65 402 3 796 269 46 79 chr6 8054295 8054475 -174360767 + MLT1J LTR MaLR 326 511 0 473 0 0 17 chr6 8054479 8054537 -174360705 + (TCCA)n Simple_repeat Simple_repeat 1 57 0 2436 76 0 0 chr6 8054706 8055010 -174360232 + AluY SINE Alu 1 304 -7 230 281 0 16 chr6 8055163 8055227 -174360015 + GA-rich Low_complexity Low_complexity 1 63 0 1192 167 9 14 chr6 8056684 8056894 -174358348 + MLT1A1 LTR MaLR 18 226 -139 721 279 73 0 chr6 8056884 8057088 -174358154 - MER115 DNA AcHobo -467 226 8 * 1438 282 61 25 chr6 8058850 8059372 -174355870 + MLT1H1 LTR MaLR 15 555 0 198 103 0 0 chr6 8059743 8059772 -174355470 + (A)n Simple_repeat Simple_repeat 1 29 0 1976 120 14 3 chr6 8060403 8060687 -174354555 - AluSx SINE Alu -25 287 1 25 31 0 0 chr6 8061409 8061441 -174353801 + AT_rich Low_complexity Low_complexity 1 32 0 270 238 221 16 chr6 8061498 8061574 -174353668 - MIR SINE MIR -14 248 189 2231 81 7 0 chr6 8061574 8061858 -174353384 - AluY SINE Alu 0 311 26 270 238 221 16 chr6 8061858 8061903 -174353339 - MIR SINE MIR -73 189 102 357 278 90 47 chr6 8061905 8062117 -174353125 - MLT1K LTR MaLR -27 561 341 372 268 31 0 chr6 8062438 8062535 -174352707 - MIR SINE MIR -158 104 5 1277 109 0 0 chr6 8062570 8062735 -174352507 + AluSq SINE Alu 1 165 -148 819 268 180 42 chr6 8062818 8063341 -174351901 - MLT1G1 LTR MaLR 0 595 1 2609 108 19 95 chr6 8063610 8063856 -174351386 - MSTC LTR MaLR 0 428 232 2121 118 0 10 chr6 8063856 8064161 -174351081 + AluSc SINE Alu 1 302 -7 2609 108 19 95 chr6 8064161 8064377 -174350865 - MSTC LTR MaLR -196 232 1 1557 232 43 0 chr6 8064668 8064995 -174350247 - Tigger7 DNA MER2_type -391 342 2 2027 174 43 5 chr6 8064995 8065369 -174349873 + L1MB1 LINE L1 5781 6168 0 865 210 10 25 chr6 8066447 8066647 -174348595 - MLT1B LTR MaLR 0 390 194 2137 131 0 3 chr6 8067094 8067400 -174347842 + AluSx SINE Alu 1 305 -7 14006 120 53 39 chr6 8071040 8071596 -174343646 + Tigger1 DNA MER2_type 1 548 -1870 1785 142 55 0 chr6 8071596 8071871 -174343371 + AluJb SINE Alu 1 290 -22 14006 120 53 39 chr6 8071871 8072431 -174342811 + Tigger1 DNA MER2_type 548 1099 -1319 2536 61 0 3 chr6 8072431 8072742 -174342500 + AluY SINE Alu 2 311 0 14006 120 53 39 chr6 8072742 8073050 -174342192 + Tigger1 DNA MER2_type 1099 1401 -1017 2420 65 0 0 chr6 8073050 8073342 -174341900 + AluY SINE Alu 1 292 -19 14006 120 53 39 chr6 8073342 8074288 -174340954 + Tigger1 DNA MER2_type 1401 2405 -13 265 250 100 50 chr6 8075153 8075273 -174339969 + L2 LINE L2 3165 3290 -23 247 318 0 0 chr6 8075749 8075812 -174339430 - MLT1L LTR MaLR -552 63 1 655 194 215 26 chr6 8076068 8076259 -174338983 - MIR SINE MIR 0 262 36 443 193 73 0 chr6 8076372 8076484 -174338758 + L1MB7 LINE L1 6019 6158 -22 237 352 145 11 chr6 8076514 8076693 -174338549 + MIR SINE MIR 49 251 -11 2067 122 0 3 chr6 8076871 8077157 -174338085 + AluSg SINE Alu 16 300 -10 955 174 6 12 chr6 8077233 8077394 -174337848 + FRAM SINE Alu 1 155 -21 2619 48 0 3 chr6 8077402 8077711 -174337531 + AluY SINE Alu 1 308 -3 303 219 156 0 chr6 8077849 8077945 -174337297 - L2 LINE L2 -15 3298 3188 2148 119 3 0 chr6 8078908 8079203 -174336039 + AluSp SINE Alu 1 296 -17 416 209 37 4 chr6 8080817 8080954 -174334288 - MER5A DNA MER1_type 0 189 1 2310 91 0 36 chr6 8081349 8081657 -174333585 - AluSx SINE Alu -15 297 1 2390 74 10 0 chr6 8081726 8082023 -174333219 - AluSp SINE Alu -12 301 2 1990 189 64 11 chr6 8082535 8082975 -174332267 + L1MD2 LINE L1 5895 6357 -2 473 244 9 43 chr6 8083349 8083464 -174331778 + L2 LINE L2 3155 3265 -7 694 256 67 0 chr6 8083611 8083791 -174331451 + MIR SINE MIR 66 257 -5 1063 248 58 111 chr6 8084036 8084569 -174330673 - MER21B LTR ERV1 -335 528 24 1575 100 256 0 chr6 8084730 8085000 -174330242 + MER44D DNA MER2_type 1 609 0 33 43 0 0 chr6 8086599 8086646 -174328596 + AT_rich Low_complexity Low_complexity 1 47 0 446 278 85 14 chr6 8086725 8086943 -174328299 - L1ME LINE L1 -425 5745 5509 183 302 0 63 chr6 8087515 8087578 -174327664 + L2 LINE L2 2446 2504 -810 213 319 151 8 chr6 8087759 8087878 -174327364 + L2 LINE L2 2809 2944 -328 28 71 0 0 chr6 8088365 8088421 -174326821 + AT_rich Low_complexity Low_complexity 1 56 0 2162 109 13 10 chr6 8088549 8088852 -174326390 + AluSx SINE Alu 1 304 -8 610 359 106 21 chr6 8088960 8089578 -174325664 + L2 LINE L2 2447 3132 -181 261 254 0 0 chr6 8089578 8089637 -174325605 - MLT1E1 LTR MaLR 0 654 596 303 330 11 0 chr6 8089666 8089760 -174325482 - L2 LINE L2 -12 3301 3207 246 275 94 22 chr6 8090758 8090896 -174324346 - MLT1J LTR MaLR 0 511 364 959 154 0 0 chr6 8090965 8091108 -174324134 - AluJb SINE Alu -12 300 158 21 0 0 0 chr6 8091279 8091300 -174323942 + AT_rich Low_complexity Low_complexity 1 21 0 909 156 0 15 chr6 8091300 8091435 -174323807 - FLAM_C SINE Alu 0 133 1 267 276 0 0 chr6 8091437 8091495 -174323747 - MLT1J LTR MaLR -212 299 242 283 299 75 108 chr6 8091627 8091841 -174323401 - L2 LINE L2 -87 3185 2979 2352 100 0 6 chr6 8092427 8092738 -174322504 - AluSq SINE Alu -4 309 1 1948 177 74 26 chr6 8093438 8093816 -174321426 - MSTD LTR MaLR 0 396 1 2084 117 3 10 chr6 8094233 8094523 -174320719 - AluSx SINE Alu -24 288 1 372 320 73 21 chr6 8094857 8095091 -174320151 + HAL1b LINE L1 216 461 -887 252 301 44 44 chr6 8095103 8095239 -174320003 + HAL1b LINE L1 505 640 -708 472 241 63 44 chr6 8095620 8095778 -174319464 + MER46A DNA MER2_type 2 162 -74 3404 148 18 12 chr6 8095970 8096529 -174318713 - Tigger1 DNA MER2_type -2 2416 1855 799 91 50 0 chr6 8096521 8096642 -174318600 - Tigger1 DNA MER2_type -1895 523 397 * 11623 116 29 32 chr6 8096638 8096760 -174318482 - Tigger1 DNA MER2_type -557 1861 1740 2174 93 7 20 chr6 8096760 8097062 -174318180 - AluY SINE Alu -13 298 1 11623 116 29 32 chr6 8097062 8097409 -174317833 - Tigger1 DNA MER2_type -678 1740 1393 2540 27 20 3 chr6 8097409 8097703 -174317539 + AluY SINE Alu 4 302 -9 11623 116 29 32 chr6 8097703 8098474 -174316768 - Tigger1 DNA MER2_type -1025 1393 621 1968 99 8 0 chr6 8098474 8098727 -174316515 - AluSc SINE Alu -16 293 39 11623 116 29 32 chr6 8098727 8098770 -174316472 - Tigger1 DNA MER2_type -1797 621 579 2174 116 0 7 chr6 8098770 8099071 -174316171 + AluSx SINE Alu 3 301 -11 11623 116 29 32 chr6 8099071 8099629 -174315613 - Tigger1 DNA MER2_type -1839 579 24 217 300 0 0 chr6 8099651 8099663 -174315579 + (TA)n Simple_repeat Simple_repeat 1 12 -58 1988 140 3 3 chr6 8099663 8099955 -174315287 + AluJb SINE Alu 3 294 -18 217 300 0 0 chr6 8099955 8100012 -174315230 + (TA)n Simple_repeat Simple_repeat 11 70 0 233 309 41 0 chr6 8100067 8100164 -174315078 + L1MC4a LINE L1 6057 6157 -1651 2381 103 0 0 chr6 8100274 8100584 -174314658 - AluSq SINE Alu -3 310 1 291 54 0 0 chr6 8100595 8100632 -174314610 + (TCCCC)n Simple_repeat Simple_repeat 3 39 0 2236 110 13 3 chr6 8100634 8100942 -174314300 - AluSx SINE Alu -1 311 1 24 32 0 0 chr6 8101016 8101047 -174314195 + AT_rich Low_complexity Low_complexity 1 31 0 924 267 89 36 chr6 8101135 8101528 -174313714 + L1MC4a LINE L1 6502 6915 -893 897 185 11 85 chr6 8101569 8101829 -174313413 + L1MC5 LINE L1 6913 7153 -808 1314 230 54 16 chr6 8101841 8102228 -174313014 + L1MC5 LINE L1 7255 7656 -305 1291 157 0 0 chr6 8102270 8102461 -174312781 + AluJb SINE Alu 106 296 -16 360 0 0 0 chr6 8102472 8102512 -174312730 + (TG)n Simple_repeat Simple_repeat 1 40 0 1689 151 3 63 chr6 8102595 8102912 -174312330 + AluJo SINE Alu 7 304 -8 621 203 68 34 chr6 8102912 8103089 -174312153 + L1MC5 LINE L1 7718 7900 -61 2499 197 55 35 chr6 8103222 8103300 -174311942 - L1MD3 LINE L1 0 7995 7920 2844 79 6 6 chr6 8103300 8103653 -174311589 - THE1A LTR MaLR 0 355 3 12641 92 2 1 chr6 8103655 8105233 -174310009 - THE1A-int LTR MaLR 0 1580 1 2819 52 25 44 chr6 8105233 8105365 -174309877 - THE1A LTR MaLR 0 355 222 2396 95 0 7 chr6 8105365 8105671 -174309571 - AluSg SINE Alu -6 304 1 2819 52 25 44 chr6 8105671 8105900 -174309342 - THE1A LTR MaLR -133 222 1 2499 197 55 35 chr6 8105900 8106395 -174308847 - L1MD3 LINE L1 -74 7921 7406 232 229 0 0 chr6 8106421 8106469 -174308773 - MLT1F1 LTR MaLR -442 125 78 2685 204 14 40 chr6 8106514 8106920 -174308322 - MER68 LTR ERV1 0 562 174 1702 109 4 0 chr6 8106920 8107149 -174308093 + MER30 DNA MER1_type 1 230 0 2685 204 14 40 chr6 8107149 8107319 -174307923 - MER68 LTR ERV1 -388 174 1 2156 81 0 0 chr6 8107727 8108034 -174307208 + AluY SINE Alu 1 307 0 2344 102 0 0 chr6 8108061 8108366 -174306876 + AluY SINE Alu 1 305 -6 2080 119 7 3 chr6 8108801 8109095 -174306147 - AluSc SINE Alu -14 295 1 314 369 40 25 chr6 8109339 8109537 -174305705 - MIR SINE MIR -40 222 22 595 299 38 38 chr6 8109596 8109857 -174305385 + L2 LINE L2 2019 2279 -1035 475 267 7 15 chr6 8109844 8109979 -174305263 + L2 LINE L2 3180 3313 0 * 12949 168 87 21 chr6 8110081 8110889 -174304353 - L1MA4 LINE L1 0 6300 5546 2269 79 0 0 chr6 8110889 8111168 -174304074 + AluY SINE Alu 1 279 -32 207 0 0 0 chr6 8111170 8111193 -174304049 + (TTAA)n Simple_repeat Simple_repeat 1 23 0 12949 168 87 21 chr6 8111193 8114134 -174301108 - L1MA4 LINE L1 -754 5546 2286 405 183 0 37 chr6 8114145 8114227 -174301015 + L1 LINE L1 2630 2708 -3438 383 113 126 24 chr6 8114232 8114315 -174300927 - L1M3f LINE L1 -3890 3675 3595 6899 124 25 25 chr6 8114329 8114348 -174300894 - L1P5 LINE L1 -664 5487 5470 4729 75 33 75 chr6 8114348 8115053 -174300189 - L1PB1 LINE L1 -7 6144 5470 * 11949 55 0 0 chr6 8115035 8117213 -174298029 - L1PA6 LINE L1 0 6154 3973 6899 124 25 25 chr6 8115053 8118794 -174296448 - L1P5 LINE L1 -681 5470 3889 1988 122 24 0 chr6 8118795 8119083 -174296159 - AluSq SINE Alu -18 295 1 6491 166 28 9 chr6 8119085 8119215 -174296027 - L1M3f LINE L1 -4158 2407 2281 2262 109 0 0 chr6 8119215 8119508 -174295734 + AluSg SINE Alu 1 293 -17 6491 166 28 9 chr6 8119508 8120522 -174294720 - L1M3f LINE L1 -4284 2281 1241 28 29 0 0 chr6 8121295 8121330 -174293912 + AT_rich Low_complexity Low_complexity 1 35 0 191 255 0 59 chr6 8121477 8121528 -174293714 - L2 LINE L2 -81 3191 3144 2221 90 38 0 chr6 8121833 8122121 -174293121 - AluSx SINE Alu -13 299 1 199 261 54 63 chr6 8122187 8122298 -174292944 - MIR SINE MIR -46 216 107 310 185 0 0 chr6 8122311 8122365 -174292877 + L2 LINE L2 3217 3270 -2 464 277 118 40 chr6 8122568 8122809 -174292433 + MIR SINE MIR 3 262 0 182 302 93 93 chr6 8124692 8124821 -174290421 + MIR SINE MIR 16 144 -64 2089 115 37 0 chr6 8125133 8125429 -174289813 - AluSx SINE Alu -5 307 1 31 44 0 0 chr6 8125475 8125520 -174289722 + AT_rich Low_complexity Low_complexity 1 45 0 283 295 0 0 chr6 8125804 8125865 -174289377 + (CA)n Simple_repeat Simple_repeat 1 61 0 1777 99 0 0 chr6 8126068 8126291 -174288951 - AluSg/x SINE Alu -15 297 75 2860 6 0 0 chr6 8126789 8127100 -174288142 + AluYa5 SINE Alu 1 311 0 922 153 74 60 chr6 8127315 8127531 -174287711 - MER20 DNA MER1_type 0 219 1 3051 164 7 17 chr6 8127909 8128038 -174287204 - L1MB3 LINE L1 0 6183 6054 2302 101 0 22 chr6 8128038 8128356 -174286886 - AluSq SINE Alu -2 311 1 3051 164 7 17 chr6 8128356 8128811 -174286431 - L1MB3 LINE L1 -129 6054 5605 22 0 0 0 chr6 8129536 8129558 -174285684 + AT_rich Low_complexity Low_complexity 1 22 0 2318 100 0 3 chr6 8130103 8130403 -174284839 + AluSq SINE Alu 1 299 -14 384 294 110 35 chr6 8130918 8131146 -174284096 - MIR SINE MIR -16 246 2 247 357 56 16 chr6 8131827 8131953 -174283289 + MIR SINE MIR 20 150 -112 201 39 0 0 chr6 8132265 8132291 -174282951 + (TG)n Simple_repeat Simple_repeat 2 27 0 725 96 0 0 chr6 8132291 8132385 -174282857 - AluSg/x SINE Alu -26 283 190 1960 122 16 48 chr6 8132773 8133084 -174282158 - AluSx SINE Alu -7 305 5 2183 125 0 0 chr6 8133334 8133629 -174281613 - AluSx SINE Alu -17 295 1 2232 119 0 0 chr6 8135099 8135394 -174279848 + AluSx SINE Alu 1 295 -17 30 45 0 0 chr6 8136368 8136412 -174278830 + AT_rich Low_complexity Low_complexity 1 44 0 2260 132 0 0 chr6 8136429 8136740 -174278502 - AluSx SINE Alu -1 311 1 459 273 76 41 chr6 8136970 8137314 -174277928 - L1MEd LINE L1 -3316 2813 2458 226 109 0 43 chr6 8137335 8137381 -174277861 + (TAAA)n Simple_repeat Simple_repeat 4 47 0 376 303 116 49 chr6 8137381 8137505 -174277737 - L1MEd LINE L1 -3792 2367 2253 2396 75 0 3 chr6 8137505 8137799 -174277443 + AluSc SINE Alu 1 293 -16 376 303 116 49 chr6 8137799 8138006 -174277236 - L1MEd LINE L1 -3906 2253 2017 961 264 71 43 chr6 8138295 8139125 -174276117 - L1MEd LINE L1 -4752 1558 660 185 204 68 0 chr6 8139444 8139488 -174275754 + L2 LINE L2 361 407 -2907 790 243 129 38 chr6 8139513 8139854 -174275388 + MLT1A2 LTR MaLR 1 372 -2 207 0 0 0 chr6 8140721 8140744 -174274498 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 1644 99 0 0 chr6 8141025 8141237 -174274005 - AluSq SINE Alu -6 307 96 705 188 0 15 chr6 8141251 8141384 -174273858 - AluSp SINE Alu -182 131 1 649 117 27 0 chr6 8142086 8142197 -174273045 + L1MA7 LINE L1 6173 6286 -5 908 135 0 0 chr6 8142202 8142328 -174272914 + FLAM_C SINE Alu 2 127 -6 24 32 0 0 chr6 8143148 8143179 -174272063 + AT_rich Low_complexity Low_complexity 1 31 0 2083 119 16 19 chr6 8143671 8143982 -174271260 + AluSx SINE Alu 1 310 -2 1226 95 105 0 chr6 8145384 8145574 -174269668 + L1PB1 LINE L1 5938 6147 -4 195 42 0 0 chr6 8146843 8146867 -174268375 + (TG)n Simple_repeat Simple_repeat 2 25 0 241 293 0 0 chr6 8147038 8147096 -174268146 + CT-rich Low_complexity Low_complexity 5 62 0 1338 265 164 20 chr6 8147770 8148367 -174266875 + L2 LINE L2 1662 2344 -970 536 134 34 92 chr6 8148356 8148475 -174266767 + MIR SINE MIR 106 217 -45 * 2404 84 0 3 chr6 8149663 8149961 -174265281 + AluSc SINE Alu 1 297 -12 565 121 33 11 chr6 8150686 8150777 -174264465 + AluJo SINE Alu 42 134 -178 362 303 117 6 chr6 8152138 8152300 -174262942 - MIR SINE MIR -10 252 73 487 314 100 18 chr6 8152314 8152534 -174262708 + MIR SINE MIR 15 252 -10 513 301 159 40 chr6 8153737 8153769 -174261473 + MIR SINE MIR 3 30 -232 2147 137 0 0 chr6 8153769 8154075 -174261167 + AluSx SINE Alu 1 306 -6 513 301 159 40 chr6 8154075 8154268 -174260974 + MIR SINE MIR 30 255 -7 186 333 137 39 chr6 8154313 8154466 -174260776 - MIR SINE MIR -60 202 35 1957 153 13 7 chr6 8155002 8155310 -174259932 - AluJo SINE Alu -2 310 1 539 280 125 25 chr6 8155804 8156125 -174259117 + L1MC4a LINE L1 5540 5892 -1916 2356 79 10 0 chr6 8156297 8156589 -174258653 - AluY SINE Alu -16 295 1 30 59 0 0 chr6 8158123 8158174 -174257068 + AT_rich Low_complexity Low_complexity 1 51 0 862 194 0 0 chr6 8158247 8158407 -174256835 + MER3 DNA MER1_type 1 160 -49 2297 106 3 3 chr6 8158578 8158889 -174256353 + AluSq SINE Alu 1 311 -2 2399 77 3 6 chr6 8163584 8163897 -174251345 - AluSp SINE Alu -1 312 1 384 298 17 15 chr6 8164133 8164274 -174250968 + MIR3 SINE MIR 56 196 -12 357 255 99 99 chr6 8164971 8165293 -174249949 + L1ME3A LINE L1 560 881 -5189 382 226 20 92 chr6 8165297 8165427 -174249815 + L1ME3A LINE L1 898 882 -5096 2281 117 3 0 chr6 8165427 8165734 -174249508 + AluSx SINE Alu 1 308 -4 382 226 20 92 chr6 8165734 8165939 -174249303 + L1ME3A LINE L1 881 1099 -4879 503 314 173 7 chr6 8166031 8166331 -174248911 + L1ME3A LINE L1 1377 1685 -838 2158 112 7 0 chr6 8166499 8166794 -174248448 - AluSx SINE Alu -15 297 1 2309 103 3 6 chr6 8167045 8167356 -174247886 - AluSp SINE Alu -3 310 1 1392 255 129 68 chr6 8167373 8168662 -174246580 + L1ME3A LINE L1 2150 3516 -2564 1481 268 66 29 chr6 8168670 8169229 -174246013 - MLT1E LTR MaLR -13 580 1 431 233 74 81 chr6 8169231 8169502 -174245740 + L1ME3A LINE L1 3513 3781 -2299 * 1658 254 46 65 chr6 8169501 8170342 -174244900 + L1ME3A LINE L1 5227 6051 -53 218 414 69 0 chr6 8170373 8170489 -174244753 - L2 LINE L2 -28 3244 3121 2550 148 16 20 chr6 8170619 8171066 -174244176 + MER65A LTR ERV1 1 445 0 2684 102 53 12 chr6 8171100 8171511 -174243731 - MSTA LTR MaLR 0 428 1 2218 129 0 0 chr6 8172020 8172330 -174242912 + AluSx SINE Alu 1 310 -2 1694 180 32 0 chr6 8172334 8172645 -174242597 + MLT1A1 LTR MaLR 45 365 0 265 294 92 9 chr6 8173254 8173363 -174241879 + MER94 DNA DNA 16 133 -1 2580 155 42 13 chr6 8175038 8175510 -174239732 + MER66B LTR ERV1 1 486 0 1462 203 65 15 chr6 8175989 8176060 -174239182 - MER2 DNA MER2_type -2 342 276 2277 111 0 13 chr6 8176060 8176367 -174238875 + AluSg SINE Alu 1 303 -7 1462 203 65 15 chr6 8176367 8176620 -174238622 - MER2 DNA MER2_type -68 276 2 21 57 0 0 chr6 8177652 8177687 -174237555 + AT_rich Low_complexity Low_complexity 1 35 0 2485 156 2 44 chr6 8178008 8178437 -174236805 + MER47B DNA MER2_type 8 418 0 1256 156 5 18 chr6 8178899 8179117 -174236125 - MSTB LTR MaLR 0 426 212 * 1601 258 48 50 chr6 8179105 8179621 -174235621 - MER21B LTR ERV1 -348 515 1 199 79 53 0 chr6 8180296 8180334 -174234908 + T-rich Low_complexity Low_complexity 3 42 0 577 282 95 26 chr6 8180416 8180689 -174234553 - L2 LINE L2 -1 3312 3021 195 129 0 0 chr6 8181003 8181034 -174234208 + (TCTCCC)n Simple_repeat Simple_repeat 5 35 0 342 262 47 19 chr6 8182093 8182200 -174233042 - L3 LINE CR1 -125 1452 1343 181 273 78 26 chr6 8182321 8182398 -174232844 - L3 LINE CR1 -410 1167 1087 2157 107 0 0 chr6 8182806 8183086 -174232156 - AluSx SINE Alu -32 280 1 309 309 190 4 chr6 8183088 8183266 -174231976 - MIR SINE MIR -37 225 9 1838 156 102 15 chr6 8183292 8183626 -174231616 - MLT1A1 LTR MaLR -2 363 1 631 203 55 1 chr6 8183922 8184065 -174231177 - L1ME2 LINE L1 -2 6332 6022 2056 208 20 20 chr6 8184067 8184523 -174230719 - L1ME2 LINE L1 -239 5925 5470 21 0 0 0 chr6 8184594 8184615 -174230627 + AT_rich Low_complexity Low_complexity 1 21 0 2266 84 0 3 chr6 8184617 8184925 -174230317 + AluY SINE Alu 1 307 0 2202 143 37 69 chr6 8185647 8185921 -174229321 - L1MA9 LINE L1 0 6312 6058 1882 116 60 28 chr6 8185921 8186205 -174229037 - AluSx SINE Alu -19 293 1 2202 143 37 69 chr6 8186205 8186393 -174228849 - L1MA9 LINE L1 -254 6058 5865 544 209 59 44 chr6 8186393 8186647 -174228595 - L1ME2 LINE L1 -733 5445 5189 1028 150 12 0 chr6 8186683 8186850 -174228392 + AluJb SINE Alu 128 296 -16 650 199 23 0 chr6 8186889 8187020 -174228222 - L1MA10 LINE L1 -10 6324 6191 512 157 41 75 chr6 8187027 8187174 -174228068 - L1ME2 LINE L1 -960 5186 5045 22 70 0 0 chr6 8187334 8187377 -174227865 + AT_rich Low_complexity Low_complexity 1 43 0 361 292 94 94 chr6 8187437 8187465 -174227777 + L2 LINE L2 3077 3104 -209 3139 144 49 103 chr6 8187465 8187539 -174227703 + MER73 LTR ERVL 1 77 -567 2291 50 0 0 chr6 8187539 8187816 -174227426 + AluY SINE Alu 1 277 -34 333 0 0 0 chr6 8187817 8187854 -174227388 + (CA)n Simple_repeat Simple_repeat 1 37 0 3139 144 49 103 chr6 8187854 8188209 -174227033 + MER73 LTR ERVL 77 384 -260 2032 125 0 39 chr6 8188209 8188521 -174226721 + AluSx SINE Alu 1 300 -12 3139 144 49 103 chr6 8188521 8188766 -174226476 + MER73 LTR ERVL 384 641 -3 361 292 94 94 chr6 8188766 8188970 -174226272 + L2 LINE L2 3103 3309 -4 1906 129 48 14 chr6 8189563 8189857 -174225385 - AluSg SINE Alu -6 304 1 2416 92 0 13 chr6 8190535 8190851 -174224391 + AluSx SINE Alu 1 312 0 2670 172 42 12 chr6 8191198 8191235 -174224007 - L1MA9 LINE L1 -5 6307 6273 2418 100 0 0 chr6 8191235 8191545 -174223697 + AluSg SINE Alu 1 310 0 2670 172 42 12 chr6 8191545 8192007 -174223235 - L1MA9 LINE L1 -39 6273 5793 265 291 20 20 chr6 8192456 8192607 -174222635 + (TA)n Simple_repeat Simple_repeat 1 151 0 324 0 0 0 chr6 8192618 8192654 -174222588 + (CA)n Simple_repeat Simple_repeat 2 37 0 2098 108 7 14 chr6 8192681 8192978 -174222264 - AluSx SINE Alu -16 296 2 467 199 89 7 chr6 8193071 8193217 -174222025 - L1ME4a LINE L1 -24 6097 5940 310 250 205 19 chr6 8193313 8193469 -174221773 - L1ME4a LINE L1 -238 5883 5699 2259 93 0 7 chr6 8193539 8193841 -174221401 - AluSx SINE Alu -12 300 1 806 214 6 12 chr6 8194632 8194800 -174220442 + FRAM SINE Alu 4 170 -6 189 107 0 0 chr6 8195005 8195033 -174220209 + (ATTG)n Simple_repeat Simple_repeat 2 29 0 1706 159 37 0 chr6 8195034 8195305 -174219937 - AluJo SINE Alu -31 281 1 27 0 0 0 chr6 8196347 8196374 -174218868 + AT_rich Low_complexity Low_complexity 1 27 0 1675 165 35 3 chr6 8196671 8196956 -174218286 + AluJo SINE Alu 1 294 -18 260 331 105 0 chr6 8197297 8197421 -174217821 + L2 LINE L2 355 491 -2823 839 128 0 8 chr6 8197584 8197709 -174217533 + FLAM_C SINE Alu 1 124 -19 2131 96 7 0 chr6 8198958 8199274 -174215968 + AluSx SINE Alu 1 318 0 23 33 0 0 chr6 8199330 8199360 -174215882 + AT_rich Low_complexity Low_complexity 1 30 0 480 129 14 0 chr6 8200298 8200368 -174214874 - THE1B LTR MaLR 0 364 294 43915 46 6 1 chr6 8200373 8206477 -174208765 + L1PA4 LINE L1 11 6144 -11 2012 115 19 32 chr6 8206477 8206791 -174208451 - THE1B LTR MaLR -54 310 1 236 310 56 56 chr6 8206900 8207042 -174208200 + MIR SINE MIR 28 169 -93 404 226 75 50 chr6 8207394 8207553 -174207689 + MER46C DNA MER2_type 2 164 -174 3018 127 7 25 chr6 8207808 8208241 -174207001 + MSTC LTR MaLR 1 425 -3 182 270 0 0 chr6 8208282 8208319 -174206923 - L2 LINE L2 -97 3216 3180 883 117 6 28 chr6 8208989 8209169 -174206073 + (TTTC)n Simple_repeat Simple_repeat 2 177 0 448 106 0 0 chr6 8211047 8211113 -174204129 + Alu SINE Alu 237 302 -10 1261 149 91 15 chr6 8211263 8211569 -174203673 - MLT1B LTR MaLR -4 386 1 2074 98 34 10 chr6 8211678 8211973 -174203269 + AluSx SINE Alu 1 302 -10 2091 136 13 0 chr6 8212878 8213187 -174202055 + AluSq SINE Alu 1 313 0 22 0 0 0 chr6 8213298 8213320 -174201922 + AT_rich Low_complexity Low_complexity 1 22 0 2185 122 0 7 chr6 8213884 8214187 -174201055 - AluSx SINE Alu -11 301 1 2378 145 17 3 chr6 8214497 8214856 -174200386 + MLT1A1 LTR MaLR 2 365 0 492 343 72 38 chr6 8215859 8216305 -174198937 + HAL1b LINE L1 132 592 -756 639 192 160 0 chr6 8216351 8216507 -174198735 + MER5A DNA MER1_type 9 189 0 902 217 12 0 chr6 8216656 8216817 -174198425 + MER70A LTR ERVL 1 163 -309 * 2233 192 8 3 chr6 8216812 8217193 -174198049 + MER70A LTR ERVL 90 472 0 31 26 0 0 chr6 8217450 8217488 -174197754 + AT_rich Low_complexity Low_complexity 1 38 0 39072 77 13 11 chr6 8217842 8223968 -174191274 - L1PA6 LINE L1 -2 6152 12 4021 245 70 61 chr6 8223974 8224159 -174191083 - L1MCc LINE L1 -4887 1536 1354 243 0 0 0 chr6 8224159 8224186 -174191056 + (TG)n Simple_repeat Simple_repeat 2 28 0 4021 245 70 61 chr6 8224186 8225887 -174189355 - L1MCc LINE L1 -5069 1354 20 316 311 49 25 chr6 8225946 8226068 -174189174 - MIR SINE MIR -126 136 12 339 211 220 29 chr6 8226092 8226284 -174188958 - L1P4 LINE L1 -370 5796 5572 3968 127 29 8 chr6 8226396 8227012 -174188230 + Tigger2 DNA MER2_type 126 754 -1964 1453 141 24 0 chr6 8227069 8227318 -174187924 + Tigger2 DNA MER2_type 2461 2715 -3 252 143 0 0 chr6 8227318 8227360 -174187882 + (TG)n Simple_repeat Simple_repeat 1 42 0 440 249 67 0 chr6 8227360 8227464 -174187778 + L1MC4 LINE L1 6571 6660 -1125 277 355 81 24 chr6 8227546 8227975 -174187267 - L2 LINE L2 -289 2983 2533 3883 263 72 77 chr6 8228089 8229876 -174185366 + L2 LINE L2 1011 2787 -527 848 283 123 23 chr6 8229901 8230251 -174184991 + L2 LINE L2 2925 3309 -4 226 276 71 0 chr6 8230425 8230523 -174184719 - MER103 DNA DNA -3 163 59 2127 149 3 0 chr6 8230604 8230906 -174184336 + AluSq SINE Alu 1 303 -10 253 268 89 71 chr6 8231461 8231573 -174183669 - MER5B DNA MER1_type -60 118 5 2294 107 0 0 chr6 8232824 8233114 -174182128 + AluSg SINE Alu 1 290 -20 229 219 0 109 chr6 8233282 8233308 -174181934 - L2 LINE L2 0 3272 3245 2300 138 36 17 chr6 8233308 8233664 -174181578 - THE1B LTR MaLR -1 363 1 229 219 0 109 chr6 8233664 8233701 -174181541 - L2 LINE L2 -27 3245 3216 474 297 141 47 chr6 8234171 8234937 -174180305 - L2 LINE L2 -1 3312 2462 563 155 0 0 chr6 8234980 8235064 -174180178 + AluS SINE Alu 2 85 -227 871 286 205 9 chr6 8235074 8235640 -174179602 - L2 LINE L2 -856 2458 1782 277 254 45 55 chr6 8235646 8235756 -174179486 - L2 LINE L2 -1639 1675 1567 1839 191 60 35 chr6 8235758 8236240 -174179002 - MLT1D LTR MaLR -2 503 10 1049 312 204 32 chr6 8236308 8237473 -174177769 - L2 LINE L2 -1842 1472 107 193 367 20 10 chr6 8237728 8237826 -174177416 - L2 LINE L2 -798 2516 2418 200 248 0 70 chr6 8238749 8238878 -174176364 + G-rich Low_complexity Low_complexity 3 122 0 24 32 0 0 chr6 8238979 8239010 -174176232 + GC_rich Low_complexity Low_complexity 1 31 0 180 0 0 0 chr6 8239014 8239034 -174176208 + (CGG)n Simple_repeat Simple_repeat 2 21 0 22 35 0 0 chr6 8239220 8239249 -174175993 + GC_rich Low_complexity Low_complexity 1 29 0 29 60 0 0 chr6 8239382 8239432 -174175810 + GC_rich Low_complexity Low_complexity 1 50 0 1586 185 3 52 chr6 8240804 8241128 -174174114 - AluJo SINE Alu 0 312 5 2458 83 0 0 chr6 8241366 8241666 -174173576 - AluSc SINE Alu -8 301 2 2280 110 3 7 chr6 8243108 8243416 -174171826 - AluSg SINE Alu -3 307 1 1821 151 17 17 chr6 8243423 8243714 -174171528 - AluJo SINE Alu -21 291 1 294 289 103 57 chr6 8244430 8244693 -174170549 - L2 LINE L2 -189 3083 2809 1959 175 62 27 chr6 8247371 8247822 -174167420 - MLT1C LTR MaLR 0 467 1 1692 179 49 9 chr6 8248713 8249059 -174166183 + MLT1A1 LTR MaLR 6 365 0 312 70 0 0 chr6 8250106 8250149 -174165093 + (TCCC)n Simple_repeat Simple_repeat 4 46 0 2084 123 24 0 chr6 8251312 8251604 -174163638 + AluSq SINE Alu 1 299 -14 352 298 50 73 chr6 8252514 8252816 -174162426 - L1ME LINE L1 -316 5805 5511 1592 153 15 23 chr6 8253669 8253930 -174161312 - AluJo SINE Alu -24 288 30 634 184 0 0 chr6 8253931 8254029 -174161213 - AluJ/FLAM SINE Alu -213 99 2 1122 163 62 15 chr6 8254843 8255195 -174160047 + Tigger1 DNA MER2_type 1 2418 0 1396 184 93 25 chr6 8255272 8255550 -174159692 + AluJb SINE Alu 5 301 -11 274 250 133 39 chr6 8256598 8256726 -174158516 - L1ME3A LINE L1 0 6170 6031 2352 94 57 23 chr6 8256798 8257150 -174158092 - THE1B LTR MaLR 0 364 1 1425 264 82 23 chr6 8257209 8257781 -174157461 - L1MC5 LINE L1 -429 7532 6927 265 352 193 0 chr6 8258788 8258933 -174156309 + MIR SINE MIR 77 249 -13 284 298 128 21 chr6 8261509 8261650 -174153592 - L2 LINE L2 0 3313 3158 293 284 60 66 chr6 8264219 8264356 -174150886 + MIR SINE MIR 15 149 -61 287 313 36 27 chr6 8266006 8266118 -174149124 + MER5A DNA MER1_type 6 118 -71 412 304 56 0 chr6 8269763 8269888 -174145354 - MIR SINE MIR -111 151 20 211 246 148 0 chr6 8270645 8270706 -174144536 - L2 LINE L2 0 3313 3244 193 319 42 59 chr6 8271708 8271827 -174143415 - L2 LINE L2 -562 2752 2636 2301 111 0 3 chr6 8272028 8272325 -174142917 - AluSx SINE Alu -12 300 5 220 0 0 79 chr6 8272732 8272770 -174142472 + (CAAAA)n Simple_repeat Simple_repeat 1 35 0 382 281 130 54 chr6 8272770 8273024 -174142218 + L1MEd LINE L1 849 3293 -2836 522 269 75 36 chr6 8273044 8273415 -174141827 + L1MEd LINE L1 967 1398 -4869 2793 196 12 55 chr6 8273929 8273991 -174141251 + MLT2B3 LTR ERVL 1 64 -490 1664 181 36 0 chr6 8273991 8274272 -174140970 - AluJo SINE Alu -20 292 2 2793 196 12 55 chr6 8274272 8274786 -174140456 + MLT2B3 LTR ERVL 64 552 -2 382 343 29 43 chr6 8274838 8274884 -174140358 - L2 LINE L2 -228 3085 3040 1789 140 29 32 chr6 8274884 8275192 -174140050 - AluJo SINE Alu -5 307 1 382 343 29 43 chr6 8275192 8275355 -174139887 - L2 LINE L2 -273 3040 2879 637 210 40 65 chr6 8275357 8275605 -174139637 + MLT1J2 LTR MaLR 20 261 -189 1509 252 81 76 chr6 8275867 8276560 -174138682 + MER21B LTR ERV1 13 712 -151 1814 193 23 0 chr6 8276560 8276865 -174138377 + AluJo SINE Alu 1 312 0 1509 252 81 76 chr6 8276865 8276912 -174138330 + MER21B LTR ERV1 712 757 -106 221 300 38 12 chr6 8277724 8277804 -174137438 + MER5A DNA MER1_type 43 124 -65 2108 104 7 4 chr6 8278737 8279017 -174136225 + AluSx SINE Alu 1 281 -31 203 81 54 0 chr6 8280763 8280800 -174134442 + GA-rich Low_complexity Low_complexity 5 43 0 2181 121 7 3 chr6 8282494 8282800 -174132442 + AluSq SINE Alu 1 307 -6 298 254 239 0 chr6 8285246 8285376 -174129866 - MIR SINE MIR -18 244 84 1989 131 28 3 chr6 8285639 8285929 -174129313 - AluSx SINE Alu -15 297 1 1000 276 97 23 chr6 8286021 8286368 -174128874 + MLT1K LTR MaLR 114 502 -86 2424 94 0 0 chr6 8286368 8286677 -174128565 + AluY SINE Alu 1 309 -2 1000 276 97 23 chr6 8286677 8286771 -174128471 + MLT1K LTR MaLR 502 588 0 417 95 0 0 chr6 8288561 8288624 -174126618 - Alu SINE Alu -10 302 240 287 288 12 62 chr6 8289414 8289574 -174125668 - MIR SINE MIR -50 212 61 198 280 174 8 chr6 8290952 8291084 -174124158 - MIR SINE MIR -62 200 47 1877 161 0 7 chr6 8291281 8291579 -174123663 + AluJb SINE Alu 1 296 -16 2861 3 0 0 chr6 8292770 8293070 -174122172 + AluYa5 SINE Alu 1 300 -11 234 0 0 0 chr6 8293521 8293547 -174121695 + (T)n Simple_repeat Simple_repeat 1 26 0 679 148 60 176 chr6 8293709 8293839 -174121403 - MIR SINE MIR -22 240 151 1558 142 127 0 chr6 8293839 8294107 -174121135 + AluJb SINE Alu 1 302 0 679 148 60 176 chr6 8294107 8294226 -174121016 - MIR SINE MIR -111 151 20 1042 164 22 6 chr6 8294230 8294413 -174120829 - MER5A DNA MER1_type 0 189 4 1982 128 24 0 chr6 8294861 8295149 -174120093 - AluSx SINE Alu -17 295 1 225 125 0 42 chr6 8295321 8295369 -174119873 - L1MA3 LINE L1 0 6305 6260 23 54 0 0 chr6 8297044 8297081 -174118161 + AT_rich Low_complexity Low_complexity 1 37 0 1747 172 3 17 chr6 8297081 8297372 -174117870 - AluJo SINE Alu -24 288 2 2886 232 90 28 chr6 8297707 8298813 -174116429 + L1MB3 LINE L1 3757 4931 -1215 328 198 37 0 chr6 8299248 8299329 -174115913 + L1MB4 LINE L1 6096 6179 -1 1373 93 0 0 chr6 8299350 8299533 -174115709 + AluY SINE Alu 129 311 0 293 235 0 0 chr6 8299734 8299802 -174115440 + HsTC2 DNA Tc2 232 299 -1599 * 671 302 90 18 chr6 8299790 8300177 -174115065 + HsTC2 DNA Tc2 477 891 -1007 1116 241 122 105 chr6 8300959 8301666 -174113576 - LTR8A LTR ERV1 -7 720 2 1289 193 35 0 chr6 8305354 8305608 -174109634 + L1MA9 LINE L1 5728 5990 -322 808 113 60 65 chr6 8305612 8305780 -174109462 + L1MA9 LINE L1 6146 6312 0 249 108 0 0 chr6 8306206 8306243 -174108999 + (A)n Simple_repeat Simple_repeat 1 37 0 613 225 86 91 chr6 8307016 8307546 -174107696 + MLT1F1 LTR MaLR 84 567 0 3642 161 24 5 chr6 8309695 8310333 -174104909 + L1MB3 LINE L1 5490 6139 -44 937 164 7 0 chr6 8310335 8310481 -174104761 + FRAM SINE Alu 1 146 -30 259 231 13 128 chr6 8310625 8310701 -174104541 + L1M4 LINE L1 3964 4014 -2132 2701 40 0 0 chr6 8310701 8311003 -174104239 - AluY SINE Alu -9 302 1 259 231 13 128 chr6 8311003 8311082 -174104160 + L1M4 LINE L1 4014 4101 -2045 1719 145 59 31 chr6 8311288 8311612 -174103630 - MER44D DNA MER2_type -6 603 1 423 293 114 37 chr6 8311669 8311868 -174103374 - L1M4 LINE L1 -2575 3571 3336 2144 105 19 0 chr6 8311868 8312183 -174103059 - L1PB1 LINE L1 -3 6148 5828 423 293 114 37 chr6 8312183 8312307 -174102935 - L1M4 LINE L1 -2810 3336 3223 1042 230 21 60 chr6 8313011 8313346 -174101896 - L1MD2 LINE L1 -10 6349 6028 21 0 0 0 chr6 8313443 8313464 -174101778 + AT_rich Low_complexity Low_complexity 1 21 0 2157 106 10 13 chr6 8313526 8313828 -174101414 + AluSx SINE Alu 1 301 -11 2160 61 82 0 chr6 8314265 8314544 -174100698 + AluY SINE Alu 1 302 -9 383 303 65 40 chr6 8314689 8314966 -174100276 - L1MEd LINE L1 -4888 1231 948 675 156 22 59 chr6 8314971 8315106 -174100136 - FLAM_A SINE Alu 0 133 4 183 244 39 102 chr6 8315912 8316039 -174099203 - MIR SINE MIR -50 212 94 765 230 73 0 chr6 8316318 8316509 -174098733 - MER3 DNA MER1_type 0 209 5 1982 122 101 18 chr6 8317096 8317433 -174097809 - MLT1A1 LTR MaLR 0 365 1 279 296 136 16 chr6 8317609 8317734 -174097508 + L2 LINE L2 3126 3265 -7 2806 171 29 11 chr6 8318186 8318712 -174096530 - L1MB5 LINE L1 0 6174 5640 2309 130 37 8 chr6 8318739 8319093 -174096149 + THE1B LTR MaLR 1 364 0 297 173 0 0 chr6 8319281 8319333 -174095909 + L2 LINE L2 3254 3305 -8 1838 164 0 7 chr6 8319948 8320241 -174095001 - AluJo SINE Alu -21 291 1 234 227 0 0 chr6 8320351 8320395 -174094847 + GA-rich Low_complexity Low_complexity 2 45 0 361 271 41 16 chr6 8320918 8321040 -174094202 + L2 LINE L2 3142 3266 -6 2311 105 3 6 chr6 8323911 8324224 -174091018 - AluSq SINE Alu -1 312 1 1241 191 160 11 chr6 8324364 8324626 -174090616 - AluJo SINE Alu 0 302 2 930 269 66 48 chr6 8325453 8326216 -174089026 + L2 LINE L2 2451 3228 -85 387 0 0 0 chr6 8326720 8326763 -174088479 + (CA)n Simple_repeat Simple_repeat 2 44 0 2296 96 3 0 chr6 8327343 8327635 -174087607 + AluSq SINE Alu 3 295 -18 367 363 28 14 chr6 8327854 8328066 -174087176 - MIR SINE MIR -2 260 46 657 116 132 25 chr6 8328137 8328258 -174086984 - AluJb SINE Alu -178 134 1 1970 156 9 18 chr6 8328579 8328918 -174086324 + MER1B DNA MER1_type 2 337 0 229 333 0 13 chr6 8330089 8330164 -174085078 + CT-rich Low_complexity Low_complexity 2 75 0 252 163 41 20 chr6 8330393 8330442 -174084800 + MER81 DNA DNA 65 114 0 238 256 12 24 chr6 8331746 8331828 -174083414 + MIR3 SINE MIR 119 199 -9 3094 43 3 0 chr6 8331925 8332297 -174082945 - L1PA5 LINE L1 -1 6153 5781 272 341 110 18 chr6 8333191 8333355 -174081887 + MIR SINE MIR 13 191 -71 21 82 0 0 chr6 8333946 8333995 -174081247 + AT_rich Low_complexity Low_complexity 1 49 0 437 255 221 5 chr6 8334151 8334355 -174080887 - MIR SINE MIR -13 249 2 1661 68 18 5 chr6 8334674 8334893 -174080349 - L1PA8 LINE L1 -11 6161 5940 1378 169 94 87 chr6 8335302 8335704 -174079538 + MLT1E2 LTR MaLR 11 415 -211 1850 148 3 67 chr6 8335990 8336321 -174078921 - AluJo SINE Alu -2 310 1 405 0 0 0 chr6 8336511 8336556 -174078686 + (TA)n Simple_repeat Simple_repeat 2 46 0 582 179 188 0 chr6 8336556 8336673 -174078569 - FLAM_C SINE Alu -3 140 2 328 274 53 46 chr6 8339214 8339372 -174075870 + MIR3 SINE MIR 42 203 -5 1923 166 3 3 chr6 8340725 8341032 -174074210 - AluJo SINE Alu -5 307 1 2643 59 0 0 chr6 8341444 8341750 -174073492 + AluY SINE Alu 1 306 -5 1011 154 5 56 chr6 8341950 8342085 -174073157 - MER5A DNA MER1_type -4 185 60 1872 105 56 0 chr6 8342085 8342389 -174072853 + AluSq SINE Alu 1 319 0 1011 154 5 56 chr6 8342389 8342447 -174072795 - MER5A DNA MER1_type -129 60 1 258 312 18 9 chr6 8342621 8342730 -174072512 + L3b LINE CR1 1391 1500 -83 215 0 67 0 chr6 8343045 8343075 -174072167 + (TTTTTG)n Simple_repeat Simple_repeat 2 33 0 265 315 99 0 chr6 8344923 8345034 -174070208 + L2 LINE L2 3151 3272 0 202 132 0 26 chr6 8345245 8345283 -174069959 + (GAAA)n Simple_repeat Simple_repeat 3 39 0 623 204 34 28 chr6 8345771 8345947 -174069295 - MER104 DNA MER2_type 0 180 4 185 290 192 27 chr6 8346291 8346515 -174068727 + L2 LINE L2 2715 2975 -339 254 333 106 22 chr6 8346586 8346766 -174068476 + L2 LINE L2 3119 3313 0 387 0 0 0 chr6 8349541 8349584 -174065658 + (CA)n Simple_repeat Simple_repeat 1 43 0 225 255 128 11 chr6 8350084 8350178 -174065064 - MIR3 SINE MIR -11 197 93 262 312 21 0 chr6 8351246 8351339 -174063903 + MIR3 SINE MIR 81 175 -33 489 344 98 15 chr6 8353567 8354108 -174061134 + L2 LINE L2 2174 2759 -555 298 224 109 68 chr6 8354823 8354970 -174060272 + MIR SINE MIR 23 175 -87 1465 150 38 23 chr6 8355042 8355308 -174059934 - AluJo SINE Alu -8 304 35 3245 159 19 9 chr6 8355951 8356524 -174058718 - L1MC1 LINE L1 0 6333 5755 1704 177 75 42 chr6 8357273 8357629 -174057613 + MLT2C1 LTR ERVL 1 372 -25 432 0 0 0 chr6 8357629 8357677 -174057565 + (TCCA)n Simple_repeat Simple_repeat 1 48 0 1704 177 75 42 chr6 8357677 8357704 -174057538 + MLT2C1 LTR ERVL 372 397 0 226 333 118 36 chr6 8357774 8358267 -174056975 - L2 LINE L2 -738 2576 2044 1908 157 10 10 chr6 8359119 8359431 -174055811 - AluJb SINE Alu 0 312 1 389 269 0 37 chr6 8360298 8360406 -174054836 + Charlie2 DNA MER1_type 44 147 -2635 459 245 0 0 chr6 8360463 8360561 -174054681 + L1MA9 LINE L1 6003 6100 -212 616 175 71 0 chr6 8360562 8360688 -174054554 + L1MA9 LINE L1 6178 6312 0 276 264 176 39 chr6 8360901 8361083 -174054159 + Charlie2a DNA MER1_type 1457 1663 -1199 189 0 0 0 chr6 8363182 8363203 -174052039 + (A)n Simple_repeat Simple_repeat 1 21 0 224 269 0 0 chr6 8365199 8365266 -174049976 + (CA)n Simple_repeat Simple_repeat 2 68 0 225 200 40 0 chr6 8366326 8366376 -174048866 - MIR SINE MIR -55 207 156 827 294 127 52 chr6 8366393 8366932 -174048310 + L2 LINE L2 1603 2100 -1214 1883 149 30 3 chr6 8366932 8367233 -174048009 - AluSx SINE Alu -1 311 3 827 294 127 52 chr6 8367233 8367670 -174047572 + L2 LINE L2 2100 2652 -662 452 267 0 46 chr6 8368343 8368474 -174046768 + MIR SINE MIR 63 187 -75 1954 132 11 0 chr6 8368653 8368970 -174046272 + AluJb SINE Alu 1 320 0 2336 88 0 3 chr6 8369103 8369398 -174045844 - AluSq SINE Alu -19 294 1 2311 83 0 29 chr6 8370024 8370337 -174044905 + AluSq SINE Alu 1 304 -9 237 302 147 16 chr6 8370893 8371022 -174044220 + MIR3 SINE MIR 60 205 -3 596 274 78 4 chr6 8371154 8371384 -174043858 + MIR SINE MIR 14 260 -2 719 221 0 0 chr6 8372868 8372995 -174042247 + FRAM SINE Alu 20 146 -30 257 135 0 0 chr6 8373657 8373694 -174041548 - 5S rRNA rRNA -83 38 2 2198 156 15 51 chr6 8374474 8374885 -174040357 + MSTD LTR MaLR 1 396 0 895 155 61 0 chr6 8374949 8375097 -174040145 - AluSg/x SINE Alu -22 290 134 2147 117 0 7 chr6 8375097 8375396 -174039846 - AluSx SINE Alu -15 297 1 2439 87 6 3 chr6 8377582 8377893 -174037349 - AluSx SINE Alu 0 312 1 543 277 19 13 chr6 8378049 8378204 -174037038 + MIR SINE MIR 23 178 -84 201 296 0 0 chr6 8378427 8378471 -174036771 - MIR SINE MIR 0 262 219 453 242 73 0 chr6 8378732 8378856 -174036386 - MER5B DNA MER1_type -45 133 1 277 290 106 37 chr6 8378879 8379016 -174036226 - MER5A DNA MER1_type -29 160 7 519 199 133 20 chr6 8380223 8380374 -174034868 - MER5B DNA MER1_type -10 168 1 2910 174 66 62 chr6 8381218 8381973 -174033269 + L1MCa LINE L1 186 943 -5483 224 250 77 29 chr6 8382138 8382242 -174033000 + MER5A DNA MER1_type 81 189 0 2254 76 42 0 chr6 8382391 8382679 -174032563 + AluY SINE Alu 2 301 -10 206 32 32 0 chr6 8382687 8382718 -174032524 + (TAAA)n Simple_repeat Simple_repeat 1 32 0 1938 161 3 19 chr6 8383016 8383333 -174031909 - AluJo SINE Alu 0 312 1 1766 196 136 7 chr6 8383593 8384011 -174031231 + MLT1D LTR MaLR 27 498 -7 708 195 0 0 chr6 8384884 8385007 -174030235 + FLAM_A SINE Alu 1 123 -10 2133 107 0 73 chr6 8387442 8387769 -174027473 + AluSx SINE Alu 1 303 -9 270 325 0 90 chr6 8387782 8387982 -174027260 - L2 LINE L2 -86 3186 3005 2189 106 0 3 chr6 8388896 8389210 -174026032 + AluSx SINE Alu 1 313 0 929 193 31 0 chr6 8389438 8389599 -174025643 + FRAM SINE Alu 1 166 0 2313 119 0 3 chr6 8389658 8389969 -174025273 + AluSx SINE Alu 1 310 -2 334 275 138 14 chr6 8390102 8390240 -174025002 - MIR3 SINE MIR -21 187 33 335 313 71 0 chr6 8390620 8390719 -174024523 - L2 LINE L2 -43 3229 3124 1926 184 115 12 chr6 8392049 8392468 -174022774 + MLT1C LTR MaLR 6 467 0 5356 244 63 43 chr6 8392516 8393453 -174021789 + L1MEc LINE L1 246 1163 -5052 180 0 0 0 chr6 8393453 8393473 -174021769 + (CAAAA)n Simple_repeat Simple_repeat 3 22 0 5356 244 63 43 chr6 8393473 8394647 -174020595 + L1MEc LINE L1 1163 2312 -3903 2309 94 0 3 chr6 8394647 8394954 -174020288 + AluY SINE Alu 3 308 -3 5356 244 63 43 chr6 8394954 8395254 -174019988 + L1MEc LINE L1 2312 2604 -3611 1805 158 30 0 chr6 8395254 8395557 -174019685 + AluJo SINE Alu 1 312 0 5356 244 63 43 chr6 8395557 8395887 -174019355 + L1MEc LINE L1 2604 3035 -3180 360 246 246 0 chr6 8396156 8396298 -174018944 - MER5A DNA MER1_type 0 189 13 765 230 133 5 chr6 8397356 8397552 -174017690 + MER58A DNA MER1_type 4 224 0 286 269 101 40 chr6 8397552 8397701 -174017541 + L3 LINE CR1 1306 1463 -114 378 306 8 8 chr6 8399711 8399835 -174015407 + MER5A DNA MER1_type 1 124 -65 193 331 192 0 chr6 8399750 8399880 -174015362 - MER5A DNA MER1_type -28 161 7 * 539 280 70 0 chr6 8401345 8401545 -174013697 - MIR SINE MIR -16 246 33 1581 219 164 39 chr6 8401626 8401717 -174013525 - MLT1E2 LTR MaLR 0 626 548 1998 143 3 0 chr6 8401717 8402011 -174013231 + AluJb SINE Alu 1 295 -17 1581 219 164 39 chr6 8402011 8402431 -174012811 - MLT1E2 LTR MaLR -78 548 51 196 374 32 11 chr6 8403257 8403447 -174011795 + L2 LINE L2 2657 2850 -464 1102 129 13 0 chr6 8403686 8403841 -174011401 - AluSq SINE Alu -20 293 137 1675 175 15 4 chr6 8404092 8404366 -174010876 + AluJo SINE Alu 1 277 -35 919 260 115 41 chr6 8404554 8404973 -174010269 + L1ME LINE L1 1 450 -5620 627 216 58 0 chr6 8404965 8405104 -174010138 + L1ME2 LINE L1 6008 6154 -10 * 1946 115 39 0 chr6 8405177 8405456 -174009786 - AluSx SINE Alu -20 292 3 298 193 35 153 chr6 8405458 8405660 -174009582 + L1MC4 LINE L1 7864 8041 -1 951 127 0 0 chr6 8407930 8408056 -174007186 + FLAM_C SINE Alu 1 126 -17 1735 149 14 11 chr6 8408066 8408347 -174006895 + AluJo SINE Alu 1 282 -30 213 39 0 0 chr6 8408353 8408379 -174006863 + (TAA)n Simple_repeat Simple_repeat 2 27 0 187 206 330 10 chr6 8408955 8409052 -174006190 + MER5A DNA MER1_type 16 143 -46 * 473 248 115 49 chr6 8409045 8409331 -174005911 + MER5C DNA MER1_type 20 324 0 227 303 0 0 chr6 8410847 8410923 -174004319 + L1ME1 LINE L1 6046 6121 -45 395 281 131 11 chr6 8411044 8411304 -174003938 - LTR33A LTR ERVL -2 521 231 209 217 0 0 chr6 8411674 8411720 -174003522 + A-rich Low_complexity Low_complexity 1 46 0 203 267 0 0 chr6 8412001 8412046 -174003196 + GA-rich Low_complexity Low_complexity 1 45 0 2212 106 7 0 chr6 8412465 8412757 -174002485 - AluSx SINE Alu -18 294 1 1504 161 28 46 chr6 8413766 8414090 -174001152 + L1MC1 LINE L1 6016 6333 0 184 220 40 0 chr6 8415348 8415398 -173999844 + MIR3 SINE MIR 153 204 -4 1996 128 0 29 chr6 8416457 8416763 -173998479 + AluSx SINE Alu 1 297 -15 389 308 69 47 chr6 8418073 8418349 -173996893 - L2 LINE L2 -27 3286 3005 363 166 78 181 chr6 8419605 8419658 -173995584 - MER5B DNA MER1_type 0 178 121 592 212 0 38 chr6 8419658 8419790 -173995452 + FLAM_A SINE Alu 1 127 -6 363 166 78 181 chr6 8419790 8419929 -173995313 - MER5B DNA MER1_type -57 121 6 433 268 28 56 chr6 8419993 8420172 -173995070 - MER5B DNA MER1_type 0 178 5 207 333 0 0 chr6 8420320 8420383 -173994859 + G-rich Low_complexity Low_complexity 1 63 0 26 88 0 0 chr6 8421792 8421860 -173993382 + GC_rich Low_complexity Low_complexity 1 68 0 222 62 0 0 chr6 8422352 8422384 -173992858 + (CTG)n Simple_repeat Simple_repeat 3 34 0 185 160 0 20 chr6 8422521 8422571 -173992671 + (CGG)n Simple_repeat Simple_repeat 1 49 0 22 0 0 0 chr6 8423416 8423438 -173991804 + GC_rich Low_complexity Low_complexity 1 22 0 2360 133 17 0 chr6 8425268 8425622 -173989620 + MER46B DNA MER2_type 2 236 0 189 107 0 0 chr6 8425656 8425684 -173989558 + (CA)n Simple_repeat Simple_repeat 2 29 0 1727 120 7 80 chr6 8427029 8427328 -173987914 + AluJb SINE Alu 24 300 -12 321 175 225 33 chr6 8428374 8428494 -173986748 - L2 LINE L2 0 3313 3171 1220 248 45 7 chr6 8428550 8428869 -173986373 + MLT1E2 LTR MaLR 271 626 0 767 269 88 30 chr6 8428879 8429184 -173986058 - L2 LINE L2 -173 3140 2818 988 238 71 29 chr6 8429270 8429581 -173985661 + L1ME3A LINE L1 5842 6165 -5 715 281 32 32 chr6 8429621 8429867 -173985375 - L2 LINE L2 -551 2763 2518 1880 79 0 0 chr6 8430253 8430482 -173984760 - AluY SINE Alu -1 310 82 1014 197 56 16 chr6 8430511 8430760 -173984482 + L1MC3 LINE L1 7527 7785 0 2229 116 3 0 chr6 8430842 8431136 -173984106 + AluSq SINE Alu 1 295 -18 3845 204 61 75 chr6 8431375 8431673 -173983569 - L1MDa LINE L1 -4085 2455 2154 2093 138 0 3 chr6 8431673 8431969 -173983273 - AluJb SINE Alu -17 295 1 3845 204 61 75 chr6 8431969 8432133 -173983109 - L1MDa LINE L1 -4386 2154 1989 2947 6 0 0 chr6 8432133 8432444 -173982798 - AluY SINE Alu 0 311 1 3845 204 61 75 chr6 8432444 8433146 -173982096 - L1MDa LINE L1 -4551 1989 1310 1242 63 0 0 chr6 8433146 8433304 -173981938 - L1PA3 LINE L1 0 6155 5998 3845 204 61 75 chr6 8433304 8433503 -173981739 - L1MDa LINE L1 -5230 1310 1110 * 5730 136 42 2 chr6 8433496 8434400 -173980842 - L1MC1 LINE L1 0 6333 5394 2004 179 6 0 chr6 8434400 8434757 -173980485 - L1MDa LINE L1 -5392 1151 793 362 171 13 13 chr6 8435239 8435315 -173979927 + L2 LINE L2 3238 3313 0 261 271 60 53 chr6 8436335 8436468 -173978774 - L2 LINE L2 -7 3265 3132 373 248 108 8 chr6 8436665 8436794 -173978448 - L2 LINE L2 -14 3299 3158 1523 317 125 29 chr6 8436822 8438082 -173977160 - L2 LINE L2 -276 2996 1618 1995 268 50 23 chr6 8438227 8438790 -173976452 + MLT1E LTR MaLR 16 593 0 1803 185 22 27 chr6 8439583 8439950 -173975292 + MLT1A1 LTR MaLR 1 365 0 1210 102 81 106 chr6 8440784 8440865 -173974377 + MER30 DNA MER1_type 1 83 -147 2501 57 3 0 chr6 8440865 8441162 -173974080 + AluY SINE Alu 1 298 -13 1210 102 81 106 chr6 8441162 8441316 -173973926 + MER30 DNA MER1_type 83 230 0 206 299 26 0 chr6 8441945 8442022 -173973220 - L2 LINE L2 -300 2972 2894 217 340 212 17 chr6 8442130 8443012 -173972230 - L2 LINE L2 -551 2763 1710 1852 154 0 29 chr6 8444045 8444374 -173970868 + AluJo SINE Alu 1 312 0 1624 196 27 46 chr6 8444420 8444462 -173970780 - MLT1A1 LTR MaLR 0 365 324 2331 84 0 47 chr6 8444462 8444783 -173970459 + AluSq SINE Alu 1 306 -7 1624 196 27 46 chr6 8444783 8445108 -173970134 - MLT1A1 LTR MaLR -41 324 5 300 291 78 28 chr6 8445508 8445649 -173969593 + L2 LINE L2 2922 3069 -203 281 247 0 67 chr6 8446116 8446205 -173969037 + MIR SINE MIR 109 191 -71 985 203 98 51 chr6 8447525 8447745 -173967497 - L1ME3A LINE L1 0 6170 5931 2089 150 129 5 chr6 8447745 8448126 -173967116 + MSTA LTR MaLR 1 428 0 985 203 98 51 chr6 8448126 8448200 -173967042 - L1ME3A LINE L1 -239 5931 5862 371 269 23 0 chr6 8448672 8448776 -173966466 + MIR SINE MIR 45 151 -57 2366 108 0 0 chr6 8449160 8449467 -173965775 - AluSx SINE Alu -5 307 1 2302 139 21 10 chr6 8449604 8450149 -173965093 - LTR51 LTR ERV1 0 671 73 2231 115 3 0 chr6 8450149 8450453 -173964789 - AluSg SINE Alu -5 305 1 2302 139 21 10 chr6 8450453 8450527 -173964715 - LTR51 LTR ERV1 -598 73 1 26 0 0 0 chr6 8450696 8450722 -173964520 + AT_rich Low_complexity Low_complexity 1 26 0 193 305 203 34 chr6 8452144 8452262 -173962980 - L2 LINE L2 -2 3270 3133 2273 116 3 0 chr6 8452387 8452690 -173962552 + AluSx SINE Alu 1 304 -8 681 200 0 24 chr6 8453904 8454029 -173961213 + AluJb SINE Alu 7 128 -184 363 158 29 14 chr6 8454066 8454205 -173961037 + (TA)n Simple_repeat Simple_repeat 2 142 0 1737 144 0 4 chr6 8454477 8454733 -173960509 + AluJb SINE Alu 1 255 -57 616 174 9 17 chr6 8454737 8454852 -173960390 - ORSL DNA AcHobo -11 264 151 339 106 0 0 chr6 8454869 8454916 -173960326 + AluJb SINE Alu 252 298 -4 849 239 36 54 chr6 8455082 8455362 -173959880 + ORSL DNA AcHobo 1 275 0 205 371 57 9 chr6 8455515 8455620 -173959622 + L2 LINE L2 3159 3268 -4 1336 158 4 58 chr6 8455638 8455898 -173959344 + AluJo SINE Alu 52 297 -15 367 322 90 6 chr6 8456003 8456180 -173959062 + MIR SINE MIR 46 237 -25 327 338 52 0 chr6 8456345 8456481 -173958761 + MIR SINE MIR 47 189 -73 375 23 0 0 chr6 8456766 8456810 -173958432 + (TTA)n Simple_repeat Simple_repeat 2 45 0 2305 98 3 13 chr6 8457892 8458208 -173957034 + AluSq SINE Alu 1 313 0 183 235 0 0 chr6 8458242 8458293 -173956949 + G-rich Low_complexity Low_complexity 3 53 0 250 282 0 68 chr6 8458360 8458406 -173956836 + LTR67 LTR ERVL 444 539 -18 284 211 18 0 chr6 8458406 8458463 -173956779 + MLT1K LTR MaLR 511 568 -20 331 309 133 24 chr6 8459060 8459225 -173956017 + MIR3 SINE MIR 21 203 -5 808 176 150 31 chr6 8460507 8460626 -173954616 + L1ME3A LINE L1 5904 6007 -163 1890 167 6 3 chr6 8460626 8460937 -173954305 - AluJb SINE Alu 0 312 1 808 176 150 31 chr6 8460937 8461044 -173954198 + L1ME3A LINE L1 6007 6157 -13 2842 230 56 6 chr6 8461172 8461847 -173953395 - L1ME1 LINE L1 -17 6149 5441 21 0 0 0 chr6 8462678 8462699 -173952543 + AT_rich Low_complexity Low_complexity 1 21 0 675 190 8 0 chr6 8462699 8462820 -173952422 - FLAM_C SINE Alu -11 122 1 1165 136 44 29 chr6 8463653 8463859 -173951383 - MER3 DNA MER1_type 0 209 1 1403 145 5 5 chr6 8464641 8464855 -173950387 - AluJo SINE Alu -13 299 86 190 242 97 16 chr6 8465136 8465198 -173950044 - MIR SINE MIR -84 124 58 248 310 106 21 chr6 8465487 8465629 -173949613 - MIR3 SINE MIR -23 185 32 837 174 43 31 chr6 8465747 8465908 -173949334 - FRAM SINE Alu -3 163 1 185 0 0 39 chr6 8466156 8466182 -173949060 + (TTTA)n Simple_repeat Simple_repeat 1 25 0 2095 104 21 7 chr6 8466193 8466480 -173948762 - AluSq SINE Alu -22 291 1 180 143 0 0 chr6 8468390 8468432 -173946810 + (A)n Simple_repeat Simple_repeat 1 42 0 3695 143 50 16 chr6 8468668 8469282 -173945960 + MER41B LTR ERV1 1 635 0 241 326 7 43 chr6 8469813 8469951 -173945291 + L2 LINE L2 3133 3265 -7 457 261 48 30 chr6 8470023 8470188 -173945054 - MIR3 SINE MIR -3 205 38 2310 115 0 0 chr6 8470378 8470683 -173944559 + AluSx SINE Alu 1 305 -7 2317 171 23 0 chr6 8472045 8472085 -173943157 - MLT2D LTR ERVL -12 402 364 823 85 15 0 chr6 8472085 8472215 -173943027 + (TAGA)n Simple_repeat Simple_repeat 3 134 0 2317 171 23 0 chr6 8472215 8472567 -173942675 - MLT2D LTR ERVL -50 364 1 2372 108 0 6 chr6 8473198 8473512 -173941730 + AluSx SINE Alu 1 312 0 346 274 170 72 chr6 8473794 8474195 -173941047 + MLT1J2 LTR MaLR 2 441 -9 2368 104 0 0 chr6 8474623 8474921 -173940321 + AluSq SINE Alu 1 298 -15 1086 257 105 34 chr6 8474923 8475495 -173939747 - MLT2F LTR ERVL -12 651 2 371 259 94 55 chr6 8475572 8475773 -173939469 + L2 LINE L2 3088 3296 -17 369 253 205 18 chr6 8475993 8476159 -173939083 - MIR SINE MIR -16 246 50 227 306 47 24 chr6 8476713 8476798 -173938444 + MIR SINE MIR 29 115 -147 1946 165 30 12 chr6 8478709 8479116 -173936126 + MLT1B LTR MaLR 5 433 -34 984 189 28 18 chr6 8479619 8479836 -173935406 + MER20 DNA MER1_type 1 219 0 1111 142 11 11 chr6 8479905 8480095 -173935147 - AluJo SINE Alu -1 311 122 833 148 0 15 chr6 8480144 8480279 -173934963 - AluJo SINE Alu -169 133 1 1743 176 47 52 chr6 8480280 8480667 -173934575 + MLT1B LTR MaLR 6 390 0 1409 110 8 55 chr6 8480676 8480913 -173934329 - MLT1B LTR MaLR -161 229 4 286 296 46 9 chr6 8481448 8481556 -173933686 - MLT1L LTR MaLR -8 607 496 456 271 30 15 chr6 8481690 8481823 -173933419 - MLT1L LTR MaLR -353 262 128 506 289 11 42 chr6 8482066 8482256 -173932986 + ERVL LTR ERVL 10 193 -4803 2001 160 31 0 chr6 8482827 8483146 -173932096 + MER7A DNA MER2_type 1 327 -19 299 211 26 0 chr6 8483163 8483239 -173932003 - L1M4 LINE L1 -1052 5094 5017 799 157 0 15 chr6 8483395 8483529 -173931713 + FLAM_C SINE Alu 1 132 -1 1384 86 50 10 chr6 8483543 8483741 -173931501 + AluSg/x SINE Alu 89 294 -16 282 230 54 0 chr6 8483830 8483904 -173931338 - L1P LINE L1 -2366 3780 3703 2224 152 38 47 chr6 8484026 8484719 -173930523 + L1MB8 LINE L1 4871 5572 -606 3840 89 10 43 chr6 8484720 8484916 -173930326 - L1PA16 LINE L1 -1 6165 5964 1839 181 3 0 chr6 8484916 8485219 -173930023 - AluJo SINE Alu -8 304 1 3840 89 10 43 chr6 8485219 8485609 -173929633 - L1PA16 LINE L1 -202 5964 5598 6071 178 17 12 chr6 8485633 8486062 -173929180 - L1P4 LINE L1 -545 5621 5196 2030 132 17 7 chr6 8486062 8486357 -173928885 - AluSq SINE Alu -15 298 1 6071 178 17 12 chr6 8486357 8487500 -173927742 - L1P4 LINE L1 -970 5196 4040 3251 183 13 7 chr6 8487505 8488116 -173927126 + L1MB8 LINE L1 5562 6176 -2 2301 270 91 19 chr6 8488138 8489859 -173925383 + ERVL LTR ERVL 401 2331 -2665 759 293 21 45 chr6 8489864 8489954 -173925288 + ERVL LTR ERVL 2489 2580 -2416 2196 120 13 0 chr6 8489954 8490255 -173924987 + AluSx SINE Alu 1 305 -7 759 293 21 45 chr6 8490255 8490271 -173924971 + ERVL LTR ERVL 2580 2595 -2401 2874 122 7 23 chr6 8490271 8490705 -173924537 + MSTC LTR MaLR 2 428 0 759 293 21 45 chr6 8490705 8490887 -173924355 + ERVL LTR ERVL 2595 2771 -2225 * 1394 331 58 36 chr6 8490882 8491787 -173923455 + ERVL LTR ERVL 4144 5067 -697 1013 214 117 16 chr6 8492192 8492509 -173922733 + LTR16A LTR ERVL 66 414 -36 1495 262 97 68 chr6 8492582 8493205 -173922037 + HAL1 LINE L1 1668 2322 -185 2096 117 3 22 chr6 8493205 8493521 -173921721 - AluSx SINE Alu -2 310 1 1495 262 97 68 chr6 8493521 8493710 -173921532 + HAL1 LINE L1 2322 2504 -3 2286 113 3 0 chr6 8493735 8494046 -173921196 + AluSp SINE Alu 2 313 0 847 218 0 0 chr6 8494431 8494578 -173920664 + FRAM SINE Alu 1 146 -30 1162 265 31 55 chr6 8494617 8494716 -173920526 - L1MC5 LINE L1 -90 7871 7771 1718 182 0 7 chr6 8494716 8495013 -173920229 - AluJb SINE Alu -17 295 1 1162 265 31 55 chr6 8495013 8495495 -173919747 - L1MC5 LINE L1 -190 7771 7304 331 269 195 62 chr6 8495790 8496047 -173919195 + MLT1H-int LTR MaLR 1074 1364 -7 694 264 184 48 chr6 8496083 8496393 -173918849 + MLT1H LTR MaLR 43 394 -173 299 181 162 29 chr6 8496461 8496566 -173918676 - L1MC5 LINE L1 -734 7227 7109 375 231 103 17 chr6 8496629 8496746 -173918496 - L1MC5 LINE L1 -853 7108 6982 957 248 16 33 chr6 8496775 8497081 -173918161 - L1MC4 LINE L1 -954 7088 6788 1393 60 0 0 chr6 8497277 8497443 -173917799 + AluSg/x SINE Alu 136 301 -11 465 276 0 98 chr6 8497594 8497768 -173917474 - MER5B DNA MER1_type -21 157 1 349 319 88 0 chr6 8499304 8499417 -173915825 + MER20B DNA MER1_type 53 175 -608 2623 62 0 0 chr6 8500610 8500918 -173914324 + AluY SINE Alu 1 308 -3 390 243 81 27 chr6 8503125 8503336 -173911906 + LTR16C LTR ERVL 169 448 -43 589 279 86 72 chr6 8503390 8503752 -173911490 - MLT1K LTR MaLR -2 586 220 471 270 30 69 chr6 8504380 8504613 -173910629 - MLT1K LTR MaLR -5 583 360 462 298 62 22 chr6 8504718 8504896 -173910346 - MLT1K LTR MaLR -397 191 7 2285 75 7 0 chr6 8505582 8505896 -173909346 + AluSp SINE Alu 5 320 0 1836 173 43 3 chr6 8506177 8506506 -173908736 + MER2 DNA MER2_type 1 342 -2 1976 118 7 28 chr6 8507035 8507349 -173907893 + AluSq SINE Alu 1 308 0 2034 117 47 0 chr6 8507349 8507648 -173907594 + AluSq SINE Alu 1 313 0 1757 261 29 2 chr6 8508305 8508722 -173906520 + MER70B LTR ERVL 4 431 -147 277 319 0 0 chr6 8508847 8508919 -173906323 + (CA)n Simple_repeat Simple_repeat 1 72 0 2341 69 0 0 chr6 8509097 8509372 -173905870 + AluY SINE Alu 22 296 -15 802 205 27 32 chr6 8509757 8509942 -173905300 + MLT1A2 LTR MaLR 1 184 -190 1965 162 51 14 chr6 8560112 8560464 -173854778 - MLT1A1 LTR MaLR 0 365 1 514 133 71 20 chr6 8560606 8560704 -173854538 + Tigger2 DNA MER2_type 2398 2500 -218 2323 83 10 7 chr6 8561095 8561397 -173853845 - AluSg SINE Alu -7 303 1 294 315 0 0 chr6 8561666 8561755 -173853487 - L1MC4 LINE L1 -26 8016 7928 22 0 0 0 chr6 8561882 8561904 -173853338 + AT_rich Low_complexity Low_complexity 1 22 0 365 258 117 75 chr6 8561913 8562030 -173853212 + L1ME LINE L1 5310 5421 -700 2128 119 0 3 chr6 8562030 8562324 -173852918 - AluSx SINE Alu -19 293 1 365 258 117 75 chr6 8562324 8562540 -173852702 + L1ME LINE L1 5421 5657 -464 1851 114 107 11 chr6 8562541 8562813 -173852429 + AluSx SINE Alu 2 299 -13 2390 156 44 35 chr6 8562906 8563335 -173851907 + Tigger2a DNA MER2_type 1 433 -1 2031 113 0 7 chr6 8563444 8563719 -173851523 + AluSx SINE Alu 1 273 -39 195 100 0 0 chr6 8563731 8563761 -173851481 + (CAAAA)n Simple_repeat Simple_repeat 2 31 0 310 303 138 9 chr6 8564086 8564195 -173851047 + L2 LINE L2 3125 3247 -25 184 302 48 0 chr6 8564797 8564860 -173850382 + L3 LINE CR1 1495 1560 -17 22 35 0 0 chr6 8564890 8564919 -173850323 + AT_rich Low_complexity Low_complexity 1 29 0 237 117 33 83 chr6 8565328 8565388 -173849854 - L2 LINE L2 -337 2977 2921 2247 94 7 7 chr6 8566346 8566643 -173848599 - AluSg SINE Alu -13 297 1 253 217 87 0 chr6 8566931 8567000 -173848242 + L1ME3A LINE L1 6032 6106 -64 237 296 239 21 chr6 8567162 8567304 -173847938 - MIR SINE MIR -70 192 20 1798 166 3 54 chr6 8567418 8567690 -173847552 + MER7A DNA MER2_type 5 254 -2784 2374 81 0 0 chr6 8567690 8567977 -173847265 + AluSp SINE Alu 1 290 -23 369 0 0 0 chr6 8567977 8568018 -173847224 + (CA)n Simple_repeat Simple_repeat 2 42 0 1798 166 3 54 chr6 8568027 8568116 -173847126 + MER7A DNA MER2_type 254 346 0 226 310 26 26 chr6 8568116 8568229 -173847013 - L1MC/D LINE L1 -2009 5799 5687 23 0 0 0 chr6 8568348 8568371 -173846871 + AT_rich Low_complexity Low_complexity 1 23 0 3132 129 16 2 chr6 8568620 8569062 -173846180 + MER83 LTR ERV1 1 448 0 2222 117 0 0 chr6 8569169 8569469 -173845773 + AluSx SINE Alu 1 300 -12 360 0 0 0 chr6 8569469 8569509 -173845733 + (TA)n Simple_repeat Simple_repeat 2 41 0 29 47 0 0 chr6 8569554 8569597 -173845645 + AT_rich Low_complexity Low_complexity 1 43 0 274 324 56 9 chr6 8569641 8569749 -173845493 + MIR3 SINE MIR 15 127 -81 288 300 43 91 chr6 8570047 8570257 -173844985 + L2 LINE L2 3034 3233 -39 204 200 0 0 chr6 8570888 8570928 -173844314 + G-rich Low_complexity Low_complexity 2 41 0 228 67 0 0 chr6 8571526 8571556 -173843686 + (GAAA)n Simple_repeat Simple_repeat 3 32 0 2520 226 64 74 chr6 8572317 8573499 -173841743 + L1MC5 LINE L1 6424 7589 -372 422 235 94 34 chr6 8573607 8573756 -173841486 - MER5B DNA MER1_type -19 159 2 556 300 138 66 chr6 8574439 8574609 -173840633 - L2 LINE L2 -20 3252 3096 2199 103 0 10 chr6 8574609 8574900 -173840342 + AluSg1 SINE Alu 1 288 -21 556 300 138 66 chr6 8574900 8575062 -173840180 - L2 LINE L2 -176 3096 2896 2088 196 56 28 chr6 8575157 8575508 -173839734 + MLT2B1 LTR ERVL 3 372 -148 2400 148 28 14 chr6 8575508 8575867 -173839375 - THE1B LTR MaLR 0 364 1 2088 196 56 28 chr6 8575867 8575980 -173839262 + MLT2B1 LTR ERVL 372 480 -40 2142 104 0 7 chr6 8575986 8576266 -173838976 - AluSg SINE Alu -32 278 1 326 349 35 28 chr6 8576299 8576554 -173838688 + L2 LINE L2 2721 2977 -337 196 353 49 20 chr6 8576673 8576775 -173838467 + L2 LINE L2 3208 3312 -1 651 199 55 7 chr6 8577129 8577275 -173837967 - MIR SINE MIR -10 252 100 239 156 22 0 chr6 8577984 8578029 -173837213 + L2 LINE L2 3268 3313 0 2197 140 0 0 chr6 8578097 8578428 -173836814 + AluSx SINE Alu 1 312 0 854 156 64 64 chr6 8578453 8578626 -173836616 + FRAM SINE Alu 1 171 -5 244 246 0 0 chr6 8578629 8578686 -173836556 + A-rich Low_complexity Low_complexity 1 57 0 812 289 138 29 chr6 8579021 8579370 -173835872 - MLT1J2 LTR MaLR 0 450 64 501 296 74 16 chr6 8579404 8579593 -173835649 + LTR33 LTR ERVL 26 225 -296 325 184 23 58 chr6 8579597 8579684 -173835558 + LTR52 LTR ERVL 9 92 -329 301 247 52 58 chr6 8579754 8579908 -173835334 + LTR52 LTR ERVL 269 421 0 448 307 43 0 chr6 8579936 8580099 -173835143 + LTR33 LTR ERVL 350 519 -2 1992 125 3 38 chr6 8580462 8580781 -173834461 - AluSx SINE Alu -4 308 1 398 298 87 6 chr6 8581576 8581737 -173833505 + L3 LINE CR1 1337 1510 -67 244 225 34 56 chr6 8581821 8581910 -173833332 - L1MC5 LINE L1 -37 7924 7838 338 119 104 0 chr6 8582022 8582089 -173833153 + L1M4 LINE L1 5721 5794 -390 2456 61 0 0 chr6 8582106 8582400 -173832842 - AluY SINE Alu -17 294 1 485 298 178 24 chr6 8582822 8583342 -173831900 - L2 LINE L2 -123 3190 2585 391 284 81 49 chr6 8583344 8583629 -173831613 - MLT1J LTR MaLR -2 509 216 1198 236 119 6 chr6 8583804 8584122 -173831120 + MLT1J LTR MaLR 33 386 -125 1160 148 51 37 chr6 8584348 8584461 -173830781 + MER30 DNA MER1_type 11 130 -100 2419 74 0 13 chr6 8584461 8584772 -173830470 + AluY SINE Alu 1 307 -4 1160 148 51 37 chr6 8584772 8584874 -173830368 + MER30 DNA MER1_type 130 229 -1 2127 125 0 7 chr6 8585155 8585451 -173829791 - AluSx SINE Alu -18 294 1 202 365 66 15 chr6 8585457 8585594 -173829648 + L2 LINE L2 3146 3289 -24 1895 155 3 7 chr6 8585613 8585909 -173829333 - AluJb SINE Alu -17 295 1 440 272 103 82 chr6 8586095 8586194 -173829048 - MLT1G1 LTR MaLR -406 189 83 2235 105 26 0 chr6 8586194 8586499 -173828743 + AluSq SINE Alu 1 313 0 440 272 103 82 chr6 8586499 8586583 -173828659 - MLT1G1 LTR MaLR -512 83 2 306 276 72 125 chr6 8586585 8586889 -173828353 - MLT1G1-int LTR MaLR -1 1370 1083 2114 125 3 0 chr6 8587231 8587526 -173827716 + AluSx SINE Alu 1 296 -16 337 220 165 0 chr6 8587951 8588060 -173827182 + L1MA10 LINE L1 6201 6327 -7 37 0 0 0 chr6 8588634 8588671 -173826571 + AT_rich Low_complexity Low_complexity 1 37 0 563 218 17 165 chr6 8588733 8588923 -173826319 - MLT1G1-int LTR MaLR -770 601 384 2522 129 114 8 chr6 8588923 8589310 -173825932 - MSTA LTR MaLR 0 428 1 563 218 17 165 chr6 8589310 8589336 -173825906 - MLT1G1-int LTR MaLR -987 384 356 1795 181 0 7 chr6 8589336 8589635 -173825607 - AluJb SINE Alu -4 308 12 563 218 17 165 chr6 8589635 8589680 -173825562 - MLT1G1-int LTR MaLR -1015 356 306 2590 160 19 16 chr6 8589680 8590040 -173825202 + MSTB1 LTR MaLR 1 364 -68 2057 92 27 37 chr6 8590040 8590334 -173824908 - AluSx SINE Alu -21 291 1 2590 160 19 16 chr6 8590334 8590404 -173824838 + MSTB1 LTR MaLR 364 432 0 563 218 17 165 chr6 8590404 8590558 -173824684 - MLT1G1-int LTR MaLR -1065 306 246 236 238 0 16 chr6 8590591 8590654 -173824588 - MLT1G1-int LTR MaLR -1309 62 1 2090 111 14 0 chr6 8590660 8590949 -173824293 - AluSq SINE Alu -20 293 1 1989 111 21 17 chr6 8592061 8592350 -173822892 + AluSp SINE Alu 1 290 -23 811 265 88 8 chr6 8592367 8592616 -173822626 - L1ME3A LINE L1 -8 6162 5894 * 915 226 39 11 chr6 8592609 8592627 -173822615 - L1ME2 LINE L1 -168 5996 5980 861 151 26 0 chr6 8592627 8592779 -173822463 - L1MA10 LINE L1 -2 6332 6177 915 226 39 11 chr6 8592779 8593039 -173822203 - L1ME2 LINE L1 -184 5980 5754 344 183 0 0 chr6 8593039 8593099 -173822143 - L1ME3A LINE L1 -262 5908 5849 370 282 149 51 chr6 8593397 8593652 -173821590 + MLT1I LTR MaLR 63 342 -67 1732 165 6 22 chr6 8593766 8594082 -173821160 - AluJo SINE Alu 0 312 2 4856 141 24 3 chr6 8594239 8595006 -173820236 + L1PA16 LINE L1 5363 6145 -21 778 178 0 0 chr6 8595063 8595181 -173820061 + FLAM_A SINE Alu 6 123 -19 1975 167 3 0 chr6 8595375 8595680 -173819562 + AluJb SINE Alu 1 306 -6 2337 89 3 7 chr6 8596252 8596554 -173818688 - AluSg SINE Alu -9 301 1 684 245 26 49 chr6 8596598 8596863 -173818379 + MIR SINE MIR 2 260 -2 1688 92 0 0 chr6 8597193 8597410 -173817832 - AluY SINE Alu -11 300 84 276 149 0 0 chr6 8597442 8597489 -173817753 + (TCCA)n Simple_repeat Simple_repeat 3 49 0 273 327 75 9 chr6 8597491 8597598 -173817644 - L2 LINE L2 -5 3308 3195 1805 102 94 23 chr6 8598348 8598641 -173816601 + AluSx SINE Alu 1 312 0 201 286 82 0 chr6 8598944 8598993 -173816249 + L2 LINE L2 3207 3259 -13 423 236 0 81 chr6 8599021 8599144 -173816098 - MER69 DNA AcHobo 0 2526 2414 2015 168 8 46 chr6 8600421 8600813 -173814429 - MLT1B LTR MaLR -6 384 8 1879 144 0 3 chr6 8600902 8601186 -173814056 - AluJb SINE Alu -3 309 27 1747 146 4 0 chr6 8601446 8601700 -173813542 - AluSx SINE Alu -57 255 1 1992 127 51 7 chr6 8602068 8602360 -173812882 - AluSx SINE Alu -7 305 1 467 144 152 30 chr6 8602447 8602579 -173812663 - L2 LINE L2 -8 3305 3158 268 141 109 47 chr6 8602586 8602650 -173812592 + HsTC2 DNA Tc2 3 70 -1828 1827 224 50 42 chr6 8602684 8603061 -173812181 + HsTC2 DNA Tc2 1274 1659 -239 2334 94 3 0 chr6 8603061 8603369 -173811873 - AluSq SINE Alu -4 309 1 1827 224 50 42 chr6 8603369 8603611 -173811631 + HsTC2 DNA Tc2 1659 1898 0 331 339 5 16 chr6 8603718 8603857 -173811385 + MIR SINE MIR 30 144 -64 200 286 14 14 chr6 8603919 8603989 -173811253 - L2 LINE L2 -49 3264 3195 2009 146 13 7 chr6 8604384 8604692 -173810550 - AluSx SINE Alu -2 310 1 383 261 45 18 chr6 8606092 8606203 -173809039 - MIR SINE MIR -92 170 57 42 65 0 0 chr6 8606211 8606288 -173808954 + AT_rich Low_complexity Low_complexity 1 77 0 2268 83 0 0 chr6 8606366 8606642 -173808600 - AluSc SINE Alu -14 295 20 184 315 102 39 chr6 8606722 8606849 -173808393 + MIR SINE MIR 13 147 -115 2053 139 0 10 chr6 8607910 8608220 -173807022 + AluJb SINE Alu 6 312 0 22 70 0 0 chr6 8608639 8608682 -173806560 + AT_rich Low_complexity Low_complexity 1 43 0 21 57 0 0 chr6 8608711 8608746 -173806496 + AT_rich Low_complexity Low_complexity 1 35 0 317 227 0 13 chr6 8608928 8609003 -173806239 + MLT1I LTR MaLR 327 400 -9 1912 147 10 7 chr6 8610522 8610829 -173804413 - AluSx SINE Alu -4 308 1 21 0 0 0 chr6 8610945 8610966 -173804276 + AT_rich Low_complexity Low_complexity 1 21 0 189 0 0 0 chr6 8610966 8610987 -173804255 + (TAAAAA)n Simple_repeat Simple_repeat 4 24 0 2219 98 0 3 chr6 8611764 8612060 -173803182 - AluSq SINE Alu -18 295 1 342 61 0 0 chr6 8612340 8612389 -173802853 + (TTTA)n Simple_repeat Simple_repeat 2 50 0 281 316 105 0 chr6 8612456 8612589 -173802653 + MIR SINE MIR 110 256 -6 189 162 0 0 chr6 8612687 8612707 -173802535 + GA-rich Low_complexity Low_complexity 2 24 -14 2261 117 0 3 chr6 8612707 8613007 -173802235 + AluSq SINE Alu 1 299 -14 189 162 0 0 chr6 8613007 8613023 -173802219 + GA-rich Low_complexity Low_complexity 23 38 0 338 283 71 0 chr6 8613159 8613272 -173801970 - L2 LINE L2 -16 3256 3136 225 65 0 0 chr6 8614672 8614703 -173800539 + (CAT)n Simple_repeat Simple_repeat 2 32 0 308 231 15 92 chr6 8615756 8615886 -173799356 + MIR SINE MIR 84 203 -59 180 0 0 0 chr6 8615886 8615906 -173799336 + (TGAA)n Simple_repeat Simple_repeat 1 20 0 274 318 130 7 chr6 8615965 8616119 -173799123 - MIR3 SINE MIR -32 176 4 2315 159 20 54 chr6 8616927 8617216 -173798026 - MSTB LTR MaLR 0 426 156 2247 96 10 3 chr6 8617216 8617509 -173797733 - AluSp SINE Alu -18 295 1 2315 159 20 54 chr6 8617509 8617660 -173797582 - MSTB LTR MaLR -270 156 1 1604 194 169 54 chr6 8618943 8618982 -173796260 - MLT2B1 LTR ERVL 0 520 487 405 0 0 0 chr6 8618982 8619027 -173796215 + (TG)n Simple_repeat Simple_repeat 1 45 0 1604 194 169 54 chr6 8619027 8619450 -173795792 - MLT2B1 LTR ERVL -33 487 5 311 331 103 0 chr6 8619732 8619815 -173795427 + MIR3 SINE MIR 31 104 -104 1528 186 49 3 chr6 8619815 8620100 -173795142 - AluJb SINE Alu -12 300 3 311 331 103 0 chr6 8620100 8620152 -173795090 + MIR3 SINE MIR 104 180 -28 844 201 0 0 chr6 8620593 8620737 -173794505 - Tigger5 DNA MER2_type 0 2323 2180 901 179 19 13 chr6 8620738 8620894 -173794348 - Tigger5 DNA MER2_type -2166 157 1 1196 224 44 108 chr6 8622300 8622544 -173792698 + MLT1C LTR MaLR 1 198 -269 2241 125 0 0 chr6 8622544 8622856 -173792386 + AluSx SINE Alu 1 312 0 1196 224 44 108 chr6 8622856 8623110 -173792132 + MLT1C LTR MaLR 198 467 0 978 210 68 5 chr6 8623223 8623442 -173791800 + MER96B DNA MER1_type? 6 238 -179 307 256 31 39 chr6 8624275 8624404 -173790838 - L1ME1 LINE L1 -43 6123 5996 2146 240 28 9 chr6 8624450 8625024 -173790218 - L1M4 LINE L1 -1120 5262 4678 704 174 8 0 chr6 8625030 8625151 -173790091 - MER31A LTR ERV1 0 485 364 2384 239 80 3 chr6 8625151 8625904 -173789338 - L1M4c LINE L1 -2732 3650 2840 1817 166 68 91 chr6 8625950 8626498 -173788744 - LTR49 LTR ERV1 -49 546 12 3782 251 36 29 chr6 8626505 8627144 -173788098 - L1M4c LINE L1 -3531 2851 2218 2072 143 10 0 chr6 8627144 8627451 -173787791 - AluSg SINE Alu 0 310 1 3782 251 36 29 chr6 8627451 8628534 -173786708 - L1M4c LINE L1 -4164 2218 1023 1783 175 0 3 chr6 8629172 8629488 -173785754 - AluJb SINE Alu 0 315 1 2717 113 40 38 chr6 8629851 8630274 -173784968 - MSTA LTR MaLR -4 424 1 2505 77 0 0 chr6 8630385 8630684 -173784558 - AluSc SINE Alu -10 299 1 221 316 79 82 chr6 8630758 8631087 -173784155 - L2 LINE L2 0 3272 2945 301 340 7 44 chr6 8631336 8631455 -173783787 - MIR SINE MIR -67 141 42 2237 37 67 0 chr6 8631455 8631724 -173783518 - AluY SINE Alu -15 296 10 301 340 7 44 chr6 8631724 8631763 -173783479 - MIR SINE MIR -166 42 3 2333 97 3 7 chr6 8631816 8632126 -173783116 - AluSx SINE Alu -3 309 1 4395 132 97 128 chr6 8632376 8633599 -173781643 + pTR5 LTR ERV1 738 2219 -219 2963 13 0 0 chr6 8633599 8633917 -173781325 + AluYb8 SINE Alu 1 318 0 4395 132 97 128 chr6 8633917 8634131 -173781111 + pTR5 LTR ERV1 2219 2438 0 221 314 23 12 chr6 8634204 8634290 -173780952 - MIR SINE MIR -108 154 68 240 86 0 0 chr6 8634822 8634857 -173780385 + (TTCCC)n Simple_repeat Simple_repeat 4 38 0 195 213 66 33 chr6 8635006 8635067 -173780175 - L2 LINE L2 0 3313 3251 1447 242 114 39 chr6 8635966 8636429 -173778813 - MLT1D LTR MaLR -7 498 1 431 304 59 42 chr6 8636428 8636665 -173778577 + MER112 DNA MER1_type 2 242 -18 * 182 376 0 40 chr6 8637912 8638013 -173777229 + MIR3 SINE MIR 62 158 -50 2444 64 0 3 chr6 8638021 8638318 -173776924 - AluY SINE Alu -14 297 2 2627 65 0 0 chr6 8639433 8639740 -173775502 + AluY SINE Alu 1 307 -4 5792 147 83 53 chr6 8640184 8641091 -173774151 - Tigger3b DNA MER2_type -1797 1231 279 2307 102 3 0 chr6 8641091 8641395 -173773847 + AluSq SINE Alu 1 305 -8 5792 147 83 53 chr6 8641395 8641673 -173773569 - Tigger3b DNA MER2_type -2749 279 11 2206 102 0 22 chr6 8641674 8641987 -173773255 + AluSx SINE Alu 1 306 -6 204 97 0 0 chr6 8642354 8642385 -173772857 + (TTCA)n Simple_repeat Simple_repeat 2 32 0 981 277 81 22 chr6 8642387 8642982 -173772260 - L2 LINE L2 -10 3303 2679 1265 259 88 46 chr6 8643404 8643697 -173771545 - L1ME3A LINE L1 -268 5902 5623 1522 183 29 26 chr6 8643697 8644008 -173771234 - AluJo SINE Alu 0 312 1 1265 259 88 46 chr6 8644008 8644612 -173770630 - L1ME3A LINE L1 -547 5623 4962 336 204 9 19 chr6 8644617 8644725 -173770517 + CT-rich Low_complexity Low_complexity 3 109 0 466 214 172 0 chr6 8644874 8645019 -173770223 - MER5B DNA MER1_type 0 178 9 598 268 13 0 chr6 8645063 8645220 -173770022 - MER53 DNA DNA -1 188 30 316 135 27 0 chr6 8645246 8645320 -173769922 + (TA)n Simple_repeat Simple_repeat 1 76 0 1688 115 93 22 chr6 8645320 8645589 -173769653 - AluSx SINE Alu -24 288 1 342 276 58 63 chr6 8646578 8646752 -173768490 - MIR SINE MIR -70 192 20 1992 148 0 10 chr6 8646967 8647264 -173767978 - AluJb SINE Alu -16 296 3 310 377 52 7 chr6 8647555 8647709 -173767533 - L2 LINE L2 0 3272 3112 239 309 140 11 chr6 8649103 8649281 -173765961 - MIR SINE MIR -6 256 56 530 208 10 10 chr6 8649500 8649711 -173765531 + CT-rich Low_complexity Low_complexity 1 211 0 2163 180 46 58 chr6 8650486 8651052 -173764190 - MER89 LTR ERV1 0 559 1 242 211 0 14 chr6 8653130 8653138 -173762104 + (TA)n Simple_repeat Simple_repeat 1 8 -62 849 109 8 0 chr6 8653138 8653257 -173761985 - L1PA11 LINE L1 -2 6172 6053 242 211 0 14 chr6 8653257 8653319 -173761923 + (TA)n Simple_repeat Simple_repeat 8 70 0 2532 26 0 48 chr6 8653320 8653631 -173761611 - AluY SINE Alu -15 296 1 6036 107 4 13 chr6 8653634 8654312 -173760930 - L1PA11 LINE L1 -110 6064 5381 2559 68 0 0 chr6 8654312 8654623 -173760619 - AluY SINE Alu 0 311 1 6036 107 4 13 chr6 8654623 8655382 -173759860 - L1PA11 LINE L1 -793 5381 4639 23 33 0 0 chr6 8655382 8655412 -173759830 + AT_rich Low_complexity Low_complexity 1 30 0 277 300 0 22 chr6 8656680 8656770 -173758472 + GA-rich Low_complexity Low_complexity 2 89 0 1945 158 37 23 chr6 8657101 8657455 -173757787 - MLT1A1 LTR MaLR -6 359 1 30 45 0 0 chr6 8658112 8658156 -173757086 + AT_rich Low_complexity Low_complexity 1 44 0 2198 117 0 7 chr6 8658296 8658594 -173756648 - AluSx SINE Alu -16 296 1 2232 218 16 20 chr6 8658603 8659153 -173756089 - L1MB8 LINE L1 -73 6105 5558 222 62 0 0 chr6 8659156 8659188 -173756054 + (TTTG)n Simple_repeat Simple_repeat 1 32 0 1985 140 0 0 chr6 8659188 8659467 -173755775 - AluSx SINE Alu -33 279 1 395 272 7 0 chr6 8660922 8661069 -173754173 + GA-rich Low_complexity Low_complexity 4 151 0 2588 124 15 106 chr6 8661334 8661566 -173753676 + MER4B LTR ERV1 1 253 -526 2379 98 23 0 chr6 8661566 8661871 -173753371 + AluSx SINE Alu 1 312 0 2588 124 15 106 chr6 8661871 8662313 -173752929 + MER4B LTR ERV1 253 779 0 21 36 0 0 chr6 8664488 8664516 -173750726 + AT_rich Low_complexity Low_complexity 1 28 0 2330 123 27 11 chr6 8665159 8665526 -173749716 - L1PB3 LINE L1 0 6154 5782 283 141 35 24 chr6 8665533 8665618 -173749624 + (TA)n Simple_repeat Simple_repeat 1 86 0 6404 136 17 1 chr6 8665663 8667064 -173748178 - L1PB2 LINE L1 -3 6148 4724 496 120 27 0 chr6 8667062 8667137 -173748105 - L1PB3 LINE L1 -366 5785 5709 * 180 0 0 0 chr6 8667273 8667293 -173747949 + (TTTA)n Simple_repeat Simple_repeat 1 20 0 1979 137 0 0 chr6 8667293 8667571 -173747671 - AluSg SINE Alu -32 278 1 725 193 37 7 chr6 8667602 8667737 -173747505 - Tigger7 DNA MER2_type -594 139 1 3009 118 67 28 chr6 8667740 8668276 -173746966 + L1MA8 LINE L1 5734 6290 -1 2362 210 53 31 chr6 8668905 8669117 -173746125 - MER89 LTR ERV1 0 559 353 1749 210 14 25 chr6 8669117 8669483 -173745759 + MLT1A1 LTR MaLR 4 365 0 2362 210 53 31 chr6 8669483 8669817 -173745425 - MER89 LTR ERV1 -206 353 1 225 0 0 0 chr6 8671098 8671123 -173744119 + (T)n Simple_repeat Simple_repeat 1 25 0 2194 105 7 3 chr6 8671459 8671755 -173743487 + AluSc SINE Alu 1 297 -12 1869 97 0 8 chr6 8672273 8672521 -173742721 - AluSg SINE Alu -5 305 60 217 313 17 26 chr6 8673934 8674049 -173741193 + GA-rich Low_complexity Low_complexity 5 118 0 192 40 0 0 chr6 8674133 8674158 -173741084 + (TTCC)n Simple_repeat Simple_repeat 1 25 0 1777 147 6 45 chr6 8674158 8674471 -173740771 - AluJo SINE Alu -11 301 1 249 88 0 0 chr6 8677755 8677789 -173737453 + L2 LINE L2 3267 3300 -13 210 292 96 18 chr6 8678046 8678235 -173737007 + MIR SINE MIR 3 207 -55 1772 114 19 19 chr6 8678865 8679128 -173736114 - AluSx SINE Alu -8 304 42 23 0 0 0 chr6 8680537 8680560 -173734682 + AT_rich Low_complexity Low_complexity 1 23 0 1763 171 3 7 chr6 8680586 8680879 -173734363 - AluJb SINE Alu -20 292 1 256 284 23 11 chr6 8681218 8681306 -173733936 - MER5B DNA MER1_type -86 92 4 1878 176 42 3 chr6 8681448 8681783 -173733459 - MER7A DNA MER2_type 0 346 1 260 298 0 21 chr6 8682105 8682199 -173733043 - L1MC5 LINE L1 -62 7899 7808 21 0 0 0 chr6 8683199 8683220 -173732022 + AT_rich Low_complexity Low_complexity 1 21 0 413 254 0 45 chr6 8683313 8683423 -173731819 + L1ME1 LINE L1 6035 6139 -27 706 162 0 0 chr6 8683673 8683790 -173731452 - AluJo SINE Alu -3 309 193 822 165 0 0 chr6 8683806 8683927 -173731315 - AluJo SINE Alu -187 125 5 7217 5 0 0 chr6 8684895 8685648 -173729594 + L1PA2 LINE L1 5403 6155 0 21 36 0 0 chr6 8685681 8685709 -173729533 + AT_rich Low_complexity Low_complexity 1 28 0 1548 86 10 0 chr6 8686162 8686359 -173728883 - AluY SINE Alu -15 296 98 428 341 24 12 chr6 8686765 8686929 -173728313 - MIR3 SINE MIR -5 203 38 1905 147 0 0 chr6 8688095 8688374 -173726868 + AluJb SINE Alu 5 283 -29 234 0 0 0 chr6 8688816 8688842 -173726400 + (A)n Simple_repeat Simple_repeat 1 26 0 1917 137 29 0 chr6 8689560 8689838 -173725404 - AluJo SINE Alu -26 286 1 1375 178 22 0 chr6 8690003 8690234 -173725008 - AluJo SINE Alu -76 236 1 363 64 0 0 chr6 8690987 8691034 -173724208 - MADE1 DNA Mariner 0 80 34 2101 114 4 0 chr6 8691038 8691366 -173723876 + AluSx SINE Alu 1 329 0 2271 170 83 11 chr6 8691373 8691809 -173723433 + MLT1C LTR MaLR 1 467 0 969 168 21 26 chr6 8691869 8692059 -173723183 - MER53 DNA DNA 0 189 1 1937 179 55 60 chr6 8692237 8692809 -173722433 + MLT2A2 LTR ERVL 1 554 0 248 204 0 0 chr6 8692812 8692856 -173722386 - MER2 DNA MER2_type -21 324 281 21 0 0 0 chr6 8692867 8692888 -173722354 + AT_rich Low_complexity Low_complexity 1 21 0 5786 164 65 45 chr6 8692926 8693149 -173722093 - Tigger3b DNA MER2_type -1797 1231 1014 354 23 0 0 chr6 8693149 8693192 -173722050 + (TG)n Simple_repeat Simple_repeat 1 43 0 1957 114 7 21 chr6 8693192 8693472 -173721770 - AluSc SINE Alu -33 276 1 5786 164 65 45 chr6 8693472 8693793 -173721449 - Tigger3b DNA MER2_type -2014 1014 701 2249 118 0 3 chr6 8693793 8694098 -173721144 - AluSq SINE Alu -9 304 1 5786 164 65 45 chr6 8694098 8694387 -173720855 - Tigger3b DNA MER2_type -2327 701 419 2082 133 30 0 chr6 8694387 8694687 -173720555 - AluSx SINE Alu -3 309 1 5786 164 65 45 chr6 8694687 8694826 -173720416 - Tigger3b DNA MER2_type -2609 419 284 1585 58 0 0 chr6 8694826 8695046 -173720196 - AluY SINE Alu 0 313 94 5786 164 65 45 chr6 8695046 8695274 -173719968 - Tigger3b DNA MER2_type -2744 284 1 598 103 32 142 chr6 8695274 8695419 -173719823 - MER2 DNA MER2_type -215 130 1 584 216 0 0 chr6 8695442 8695558 -173719684 + MIR3 SINE MIR 67 182 -26 2851 10 0 0 chr6 8695926 8696234 -173719008 - AluYb8 SINE Alu -10 308 1 2280 109 0 0 chr6 8696583 8696886 -173718356 - AluSx SINE Alu -9 303 1 635 183 30 98 chr6 8696998 8697162 -173718080 + AluJb SINE Alu 129 281 -31 1511 134 4 4 chr6 8697313 8697544 -173717698 + AluJo SINE Alu 1 231 -81 1604 185 20 10 chr6 8699049 8699347 -173715895 + AluJo SINE Alu 1 301 -11 218 228 18 0 chr6 8699361 8699418 -173715824 - MIR SINE MIR -55 207 150 2313 113 3 0 chr6 8699434 8699745 -173715497 + AluSx SINE Alu 1 312 0 472 271 60 13 chr6 8699930 8700081 -173715161 - MIR SINE MIR -57 205 48 629 247 78 18 chr6 8700339 8700505 -173714737 + MER5A DNA MER1_type 13 188 -1 1872 150 35 0 chr6 8700572 8700859 -173714383 - AluJb SINE Alu -11 301 5 188 404 10 10 chr6 8701576 8701680 -173713562 - MIR SINE MIR -65 143 40 248 276 164 9 chr6 8701727 8701843 -173713399 + MER5A DNA MER1_type 6 139 -50 2346 113 0 0 chr6 8701857 8702159 -173713083 + AluSq SINE Alu 1 302 -11 802 219 44 11 chr6 8702291 8702474 -173712768 + MER5A DNA MER1_type 1 189 0 232 318 61 0 chr6 8703222 8703288 -173711954 - L2 LINE L2 -55 3217 3148 1136 297 107 9 chr6 8703416 8703874 -173711368 - LTR33A LTR ERVL -14 509 7 23 0 0 0 chr6 8704115 8704138 -173711104 + AT_rich Low_complexity Low_complexity 1 23 0 968 70 0 0 chr6 8704260 8704421 -173710821 + AluSg/x SINE Alu 170 330 0 574 273 58 73 chr6 8704679 8704854 -173710388 - MER5C DNA MER1_type -54 270 99 2084 139 0 3 chr6 8704854 8705164 -173710078 + AluSx SINE Alu 1 309 -3 574 273 58 73 chr6 8705164 8705248 -173709994 - MER5C DNA MER1_type -225 99 15 2271 108 0 0 chr6 8705473 8705769 -173709473 - AluSq SINE Alu -17 296 1 276 53 0 0 chr6 8706223 8706261 -173708981 + (CA)n Simple_repeat Simple_repeat 2 39 0 534 277 15 7 chr6 8708187 8708324 -173706918 + MIR3 SINE MIR 29 166 -42 219 69 0 0 chr6 8710591 8710620 -173704622 + (A)n Simple_repeat Simple_repeat 1 29 0 1604 196 86 65 chr6 8711101 8711611 -173703631 + LTR55 LTR ERV 21 541 -7 1725 109 79 78 chr6 8711761 8712198 -173703044 + LTR64 LTR ERVK 1 499 -59 1896 155 0 16 chr6 8712404 8712714 -173702528 - AluJo SINE Alu -3 309 5 1811 172 0 10 chr6 8712723 8713020 -173702222 - AluJo SINE Alu -18 294 1 380 266 21 0 chr6 8713502 8713596 -173701646 - MER5A DNA MER1_type -85 104 9 1146 220 128 90 chr6 8713854 8714423 -173700819 + MLT1G1 LTR MaLR 2 592 -3 7988 32 0 0 chr6 8716067 8717598 -173697644 - L1PA4 LINE L1 -4 6151 4623 253 93 37 0 chr6 8717726 8717780 -173697462 + (TCTA)n Simple_repeat Simple_repeat 2 57 0 208 218 0 36 chr6 8718543 8718598 -173696644 - L2 LINE L2 0 3313 3261 817 301 18 11 chr6 8719151 8719437 -173695805 + L1ME LINE L1 16 303 -5767 915 248 66 33 chr6 8719442 8719829 -173695413 + L1ME LINE L1 726 1163 -4982 2575 272 65 26 chr6 8719842 8721034 -173694208 + L1ME LINE L1 1261 2543 -3537 2387 174 69 21 chr6 8721034 8721470 -173693772 + MSTB2 LTR MaLR 1 457 0 2575 272 65 26 chr6 8721470 8721911 -173693331 + L1ME LINE L1 2543 2965 -3115 782 200 0 0 chr6 8721927 8722047 -173693195 + FLAM_C SINE Alu 2 121 -22 809 118 46 14 chr6 8722057 8722677 -173692565 + (TA)n Simple_repeat Simple_repeat 1 640 0 430 244 29 96 chr6 8722678 8722887 -173692355 + L1M4 LINE L1 4647 4841 -1305 409 165 25 0 chr6 8722885 8722964 -173692278 + L1MC4 LINE L1 7962 8042 0 * 523 304 88 20 chr6 8723514 8723764 -173691478 + LTR16C LTR ERVL 225 491 0 422 261 152 62 chr6 8723769 8724297 -173690945 + L1ME LINE L1 2860 3434 -2646 254 350 44 37 chr6 8724486 8724780 -173690462 + L1ME LINE L1 3915 4210 -1870 422 286 111 78 chr6 8724793 8724984 -173690258 - MLT1J2 LTR MaLR -3 447 264 652 193 64 150 chr6 8724984 8725217 -173690025 - MER58C DNA MER1_type -2 213 1 422 286 111 78 chr6 8725217 8725423 -173689819 - MLT1J2 LTR MaLR -186 264 37 28 0 0 0 chr6 8725456 8725484 -173689758 + AT_rich Low_complexity Low_complexity 1 28 0 310 298 35 43 chr6 8725627 8725768 -173689474 + L1ME LINE L1 4401 4540 -1540 1926 152 0 7 chr6 8725769 8726059 -173689183 + AluJb SINE Alu 1 288 -24 22 0 0 0 chr6 8726189 8726211 -173689031 + AT_rich Low_complexity Low_complexity 1 22 0 242 278 97 16 chr6 8726313 8726436 -173688806 + MIR SINE MIR 34 171 -81 273 222 0 0 chr6 8726604 8726667 -173688575 + GA-rich Low_complexity Low_complexity 2 64 0 288 274 51 33 chr6 8726730 8726855 -173688387 + MIR SINE MIR 35 164 -72 519 250 48 48 chr6 8726869 8726971 -173688271 - MIR SINE MIR 0 262 161 228 67 0 0 chr6 8726971 8727001 -173688241 + (CAT)n Simple_repeat Simple_repeat 1 30 0 519 250 48 48 chr6 8727001 8727106 -173688136 - MIR SINE MIR -100 162 55 2230 64 7 3 chr6 8727189 8727505 -173687737 + AluY SINE Alu 1 317 0 220 280 0 0 chr6 8727662 8727712 -173687530 + MIR SINE MIR 201 250 -12 227 268 12 24 chr6 8727729 8727811 -173687431 + L2 LINE L2 3192 3272 0 186 143 0 0 chr6 8728716 8728751 -173686491 + (GA)n Simple_repeat Simple_repeat 1 35 0 2130 111 0 4 chr6 8729752 8730064 -173685178 - AluSc SINE Alu 0 311 1 1585 192 47 25 chr6 8730948 8731349 -173683893 - L1MDb LINE L1 -5197 1212 803 902 126 35 0 chr6 8731353 8731527 -173683715 + CT-rich Low_complexity Low_complexity 1 180 0 303 53 0 0 chr6 8731527 8731565 -173683677 + (TTTCC)n Simple_repeat Simple_repeat 4 41 0 2010 128 13 3 chr6 8731571 8731876 -173683366 - AluSx SINE Alu -4 308 1 1826 205 82 45 chr6 8731879 8732512 -173682730 - L1MDb LINE L1 -5595 814 27 369 323 51 31 chr6 8733223 8733418 -173681824 + L3 LINE CR1 1096 1294 -283 229 250 78 16 chr6 8733427 8733491 -173681751 - MER5A DNA MER1_type -108 81 14 2401 105 0 0 chr6 8733526 8733832 -173681410 - AluSq SINE Alu -7 306 1 228 204 8 45 chr6 8733919 8734051 -173681191 + GA-rich Low_complexity Low_complexity 4 130 0 700 238 58 0 chr6 8734487 8734659 -173680583 - MER5A DNA MER1_type 0 189 8 264 358 104 31 chr6 8735112 8735471 -173679771 + L2 LINE L2 2722 3054 -218 2132 136 3 0 chr6 8735471 8735779 -173679463 - AluSx SINE Alu -3 309 1 264 358 104 31 chr6 8735779 8735851 -173679391 + L2 LINE L2 3054 3119 -153 538 227 18 0 chr6 8735851 8735961 -173679281 - MER81 DNA DNA -2 112 1 264 358 104 31 chr6 8735961 8736025 -173679217 + L2 LINE L2 3119 3255 -17 1117 208 95 72 chr6 8737401 8737624 -173677618 - MLT1H1 LTR MaLR 0 555 318 2211 196 44 40 chr6 8737624 8738125 -173677117 + MLT1D LTR MaLR 1 503 -2 1117 208 95 72 chr6 8738125 8738290 -173676952 - MLT1H1 LTR MaLR -237 318 158 408 266 11 11 chr6 8738300 8738394 -173676848 - MLT1H1 LTR MaLR -483 107 14 2328 151 54 35 chr6 8739848 8740272 -173674970 - MSTB1 LTR MaLR 0 432 1 594 231 68 107 chr6 8740616 8740668 -173674574 - MLT1J LTR MaLR 0 511 458 1619 164 22 4 chr6 8740668 8740943 -173674299 + AluJb SINE Alu 1 280 -32 594 231 68 107 chr6 8740943 8741245 -173673997 - MLT1J LTR MaLR -53 458 171 648 211 0 0 chr6 8742824 8742938 -173672304 - AluY SINE Alu -81 230 117 213 94 0 0 chr6 8743505 8743537 -173671705 + (TTCA)n Simple_repeat Simple_repeat 1 32 0 1994 158 0 0 chr6 8743554 8743851 -173671391 - AluJb SINE Alu -15 297 1 294 276 32 83 chr6 8744231 8744448 -173670794 - L2 LINE L2 -252 3061 2856 1503 217 116 8 chr6 8744627 8745005 -173670237 + L1MA4A LINE L1 5623 6041 -262 * 1924 150 32 0 chr6 8744779 8745093 -173670149 + L1PB4 LINE L1 5810 6133 -23 620 66 0 11 chr6 8745099 8745190 -173670052 + (TAGA)n Simple_repeat Simple_repeat 4 93 0 455 280 24 24 chr6 8745310 8745478 -173669764 - HAL1 LINE L1 -122 2385 2218 306 243 98 35 chr6 8745483 8745656 -173669586 - HAL1 LINE L1 -338 2169 1986 296 258 143 62 chr6 8745675 8745884 -173669358 - HAL1 LINE L1 -1862 645 420 351 147 40 133 chr6 8745919 8746069 -173669173 - HAL1 LINE L1 -2323 184 49 2114 94 0 69 chr6 8749249 8749569 -173665673 + AluSx SINE Alu 1 298 -14 229 279 25 13 chr6 8749995 8750074 -173665168 + L2 LINE L2 3232 3311 -2 2109 109 3 0 chr6 8750156 8750449 -173664793 - AluSx SINE Alu -18 294 1 513 225 53 64 chr6 8750583 8750770 -173664472 + pTR5 LTR ERV1 743 927 -1511 3221 144 217 60 chr6 8751071 8751785 -173663457 + LTR12 LTR ERV1 1 826 0 674 240 17 9 chr6 8751975 8752204 -173663038 - L1MB1 LINE L1 -1 6167 5879 2585 154 39 15 chr6 8752233 8752613 -173662629 + L1MB1 LINE L1 5403 5798 -370 342 67 0 0 chr6 8752613 8752658 -173662584 + (TA)n Simple_repeat Simple_repeat 2 46 0 2585 154 39 15 chr6 8752658 8752745 -173662497 + L1MB1 LINE L1 5798 5881 -287 225 319 53 53 chr6 8752747 8752860 -173662382 - MIR SINE MIR -99 163 51 410 241 0 0 chr6 8752898 8753006 -173662236 - L1M4 LINE L1 -1888 4258 4151 1634 248 21 19 chr6 8753030 8753454 -173661788 - L1M4 LINE L1 -1949 4197 3773 449 327 91 44 chr6 8753766 8754151 -173661091 + MLT1L LTR MaLR 112 514 -101 214 288 76 0 chr6 8754333 8754399 -173660843 + MER5A DNA MER1_type 115 185 -4 216 0 0 0 chr6 8755125 8755149 -173660093 + (CA)n Simple_repeat Simple_repeat 1 24 0 2127 116 3 28 chr6 8755688 8756007 -173659235 - AluSx SINE Alu -1 311 1 6439 173 34 3 chr6 8756018 8757474 -173657768 - L1MC1 LINE L1 0 6333 4812 522 0 0 0 chr6 8757474 8757532 -173657710 + (TCTA)n Simple_repeat Simple_repeat 2 59 0 6439 173 34 3 chr6 8757532 8757725 -173657517 - L1MC1 LINE L1 -1521 4812 4626 276 313 108 33 chr6 8757801 8758015 -173657227 + L2 LINE L2 1766 1995 -1319 346 313 38 15 chr6 8758247 8758378 -173656864 + L2 LINE L2 3137 3270 -2 1515 230 86 24 chr6 8759251 8760285 -173654957 - L1MB8 LINE L1 -10 6168 4944 218 291 0 0 chr6 8760830 8760885 -173654357 - L2 LINE L2 -81 3191 3137 193 244 209 0 chr6 8761305 8761391 -173653851 + MIR SINE MIR 41 144 -118 1691 178 3 22 chr6 8762797 8763111 -173652131 - AluJb SINE Alu 0 312 5 2584 164 22 22 chr6 8764490 8764947 -173650295 - LTR32 LTR ERVL 0 471 15 232 304 174 50 chr6 8765706 8765982 -173649260 + L2 LINE L2 2887 3204 -68 249 33 0 0 chr6 8765982 8766012 -173649230 + (TC)n Simple_repeat Simple_repeat 1 30 0 232 304 174 50 chr6 8766012 8766034 -173649208 + L2 LINE L2 3204 3222 -50 2000 118 29 0 chr6 8766284 8766564 -173648678 - AluSx SINE Alu -19 293 6 26 0 0 0 chr6 8766810 8766836 -173648406 + AT_rich Low_complexity Low_complexity 1 26 0 1403 121 0 0 chr6 8766855 8767037 -173648205 - AluSx SINE Alu -130 182 1 357 24 0 0 chr6 8767520 8767562 -173647680 + (TCCCC)n Simple_repeat Simple_repeat 2 43 0 2471 28 0 0 chr6 8769021 8769420 -173645822 - L1P2 LINE L1 -608 5547 5149 310 224 35 24 chr6 8769696 8769781 -173645461 + L1MC2 LINE L1 5239 5324 -822 997 185 33 63 chr6 8769793 8770063 -173645179 + L1MC3 LINE L1 6564 6825 -960 5298 62 24 1 chr6 8770163 8770821 -173644421 - LTR12 LTR ERV1 -40 674 2 2496 204 9 8 chr6 8770821 8771351 -173643891 + L1 LINE L1 4534 5064 -1082 7637 134 45 3 chr6 8771460 8772808 -173642434 - L1M1 LINE L1 -3927 3638 2233 1186 187 103 11 chr6 8772915 8773177 -173642065 + L1MC2 LINE L1 5777 6062 -282 273 77 0 0 chr6 8773192 8773231 -173642011 + L1MA3 LINE L1 6267 6305 0 489 307 62 36 chr6 8773261 8773710 -173641532 - L1MDa LINE L1 -4815 1725 1265 1528 258 13 12 chr6 8775069 8775605 -173639637 + MLT2F LTR ERVL 3 584 -79 1119 178 50 78 chr6 8775793 8776074 -173639168 + L1MB1 LINE L1 5788 6060 -108 909 122 7 7 chr6 8776088 8776236 -173639006 + AluSg/x SINE Alu 163 310 0 363 170 44 41 chr6 8776274 8776403 -173638839 + L1MB1 LINE L1 6044 6167 -1 211 292 36 36 chr6 8776412 8776549 -173638693 + MIR SINE MIR 83 219 -43 357 24 0 0 chr6 8776648 8776690 -173638552 + (CA)n Simple_repeat Simple_repeat 1 42 0 937 174 37 5 chr6 8777121 8777311 -173637931 + MLT2B1 LTR ERVL 1 196 -324 372 85 0 0 chr6 8778757 8778804 -173636438 + (TCCCC)n Simple_repeat Simple_repeat 2 48 0 1995 122 59 0 chr6 8778804 8779090 -173636152 - AluSx SINE Alu -9 303 1 279 0 0 0 chr6 8779278 8779309 -173635933 + (CA)n Simple_repeat Simple_repeat 2 32 0 227 253 0 13 chr6 8779309 8779388 -173635854 - L1MC4 LINE L1 -1343 6699 6622 703 325 25 37 chr6 8779462 8779785 -173635457 - L3 LINE CR1 -15 1562 1244 542 221 190 58 chr6 8780041 8780267 -173634975 - L2 LINE L2 0 3313 3058 422 302 17 0 chr6 8780357 8780473 -173634769 - L3 LINE CR1 -420 1157 1040 3509 188 38 17 chr6 8780776 8781426 -173633816 + L1MC3 LINE L1 7058 7726 -59 1962 165 24 126 chr6 8781426 8781887 -173633355 + MLT2D LTR ERVL 1 414 0 3509 188 38 17 chr6 8781887 8781948 -173633294 + L1MC3 LINE L1 7726 7784 -1 243 246 18 0 chr6 8783930 8783987 -173631255 + L2 LINE L2 3214 3271 -1 5249 199 37 124 chr6 8784913 8786869 -173628373 - L1MA6 LINE L1 0 6300 4517 1267 150 17 0 chr6 8786869 8787102 -173628140 + Tigger1 DNA MER2_type 2 238 -2180 5249 199 37 124 chr6 8787102 8788201 -173627041 - L1MA6 LINE L1 -1783 4517 3324 * 24884 133 10 18 chr6 8788182 8790593 -173624649 - L1PA8A LINE L1 -1 6445 4017 2349 84 0 16 chr6 8790593 8790901 -173624341 - AluY SINE Alu -4 307 5 24884 133 10 18 chr6 8790901 8791394 -173623848 - L1PA8A LINE L1 -2429 4017 3522 2210 71 7 4 chr6 8791394 8791711 -173623531 + AluY SINE Alu 1 318 0 24884 133 10 18 chr6 8791711 8795239 -173620003 - L1PA8A LINE L1 -2924 3522 2 2426 184 58 11 chr6 8795238 8795890 -173619352 - L1MA6 LINE L1 -2791 3355 2673 * 29 0 0 0 chr6 8795943 8795972 -173619270 + AT_rich Low_complexity Low_complexity 1 29 0 1573 199 3 14 chr6 8796015 8796306 -173618936 + AluJo SINE Alu 1 288 -24 732 233 44 0 chr6 8796329 8796557 -173618685 + L1MD1 LINE L1 5031 5268 -878 919 172 49 0 chr6 8796603 8796766 -173618476 + FRAM SINE Alu 1 163 -13 3038 161 58 67 chr6 8796767 8797332 -173617910 + L1MD1 LINE L1 5284 5841 -401 2038 121 9 16 chr6 8797332 8797647 -173617595 + AluSq SINE Alu 1 313 0 3038 161 58 67 chr6 8797647 8797893 -173617349 + L1MD1 LINE L1 5841 6088 -154 279 304 36 53 chr6 8797887 8798134 -173617108 - L1MC/D LINE L1 -2226 5582 5340 * 1995 163 23 3 chr6 8799467 8799816 -173615426 - MLT1A1 LTR MaLR 0 365 10 1764 175 117 51 chr6 8801219 8801671 -173613571 + LTR44 LTR ERV1 1 482 -37 459 0 0 0 chr6 8801672 8801723 -173613519 + (TTCC)n Simple_repeat Simple_repeat 2 52 0 2441 176 119 52 chr6 8801723 8802466 -173612776 - LTR1B LTR ERV1 0 785 2 660 87 0 0 chr6 8802466 8802558 -173612684 + (TTCC)n Simple_repeat Simple_repeat 3 94 0 1567 140 27 89 chr6 8802576 8802869 -173612373 - AluJo SINE Alu -37 275 1 227 171 0 0 chr6 8802869 8802910 -173612332 + LTR44 LTR ERV1 479 519 0 3403 211 115 27 chr6 8803734 8804884 -173610358 - Zaphod DNA AcHobo -3 4028 2741 2277 91 7 7 chr6 8804884 8805181 -173610061 - AluSg SINE Alu -13 297 1 3403 211 115 27 chr6 8805181 8805382 -173609860 - Zaphod DNA AcHobo -1290 2741 2559 946 283 162 13 chr6 8805395 8805791 -173609451 - Zaphod DNA AcHobo -3475 556 102 2263 74 0 3 chr6 8805792 8806100 -173609142 - AluY SINE Alu 0 307 1 207 0 0 0 chr6 8806275 8806298 -173608944 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 2742 39 3 3 chr6 8806298 8806632 -173608610 - L1PA8 LINE L1 -17 6155 5822 222 91 0 0 chr6 8806704 8806737 -173608505 + (TG)n Simple_repeat Simple_repeat 1 33 0 812 224 50 0 chr6 8807466 8807645 -173607597 - MER5A DNA MER1_type 0 189 2 3332 70 2 11 chr6 8808045 8808488 -173606754 + L1PA10 LINE L1 5719 6157 -11 183 80 0 0 chr6 8811011 8811036 -173604206 + (TAAA)n Simple_repeat Simple_repeat 2 26 0 212 180 34 11 chr6 8811446 8811535 -173603707 + (TA)n Simple_repeat Simple_repeat 2 92 0 2459 56 16 0 chr6 8811967 8812272 -173602970 + AluY SINE Alu 1 310 -1 2126 156 150 25 chr6 8813344 8813871 -173601371 - L1MB5 LINE L1 -6 6168 5576 200 313 29 16 chr6 8814019 8814117 -173601125 - MIR SINE MIR -64 144 46 1073 206 0 0 chr6 8815193 8815402 -173599840 - MER3 DNA MER1_type 0 209 1 181 346 44 44 chr6 8815464 8815600 -173599642 - MIR3 SINE MIR -6 202 67 2166 92 3 36 chr6 8815708 8816012 -173599230 - AluSq SINE Alu -19 294 1 283 372 117 21 chr6 8816020 8816671 -173598571 + L2 LINE L2 1759 2471 -843 479 208 19 0 chr6 8816671 8816777 -173598465 + MER81 DNA DNA 1 108 -6 411 38 0 0 chr6 8817422 8817475 -173597767 + (CA)n Simple_repeat Simple_repeat 2 54 0 531 331 108 30 chr6 8818310 8818818 -173596424 + L2 LINE L2 2032 2579 -735 231 279 279 13 chr6 8818820 8819046 -173596196 + L2 LINE L2 3028 3313 0 363 194 0 0 chr6 8819815 8819882 -173595360 - MIR SINE MIR 0 262 196 473 252 18 0 chr6 8820344 8820455 -173594787 - MIR SINE MIR -97 165 53 808 138 0 38 chr6 8820523 8820682 -173594560 + L1PA16 LINE L1 5913 6065 -101 402 248 67 0 chr6 8820819 8820924 -173594318 + MIR SINE MIR 150 261 -1 2067 125 7 14 chr6 8820970 8821267 -173593975 + AluSx SINE Alu 1 295 -17 317 254 118 35 chr6 8822249 8822418 -173592824 + L1ME4a LINE L1 5933 6115 -6 261 338 156 23 chr6 8822528 8822836 -173592406 + L2 LINE L2 2827 3175 -97 1723 127 167 9 chr6 8824680 8825004 -173590238 + THE1C LTR MaLR 1 375 0 10711 106 7 42 chr6 8825004 8826641 -173588601 + THE1C-int LTR MaLR 1 1580 0 2071 111 72 28 chr6 8826641 8827000 -173588242 + THE1C LTR MaLR 1 375 0 460 341 49 0 chr6 8827153 8827317 -173587925 + MIR SINE MIR 62 233 -29 505 206 89 67 chr6 8827370 8827550 -173587692 + L2 LINE L2 1605 1788 -1526 2603 68 3 3 chr6 8827596 8827935 -173587307 + L1PA6 LINE L1 5815 6153 -1 195 129 0 0 chr6 8828062 8828093 -173587149 + (CA)n Simple_repeat Simple_repeat 1 31 0 1769 271 65 52 chr6 8828294 8828966 -173586276 + L2 LINE L2 1811 2491 -823 871 227 49 0 chr6 8828966 8829169 -173586073 + MLT1F LTR MaLR 1 213 -354 1413 189 73 9 chr6 8829171 8829499 -173585743 - MLT1A2 LTR MaLR 0 374 26 1290 214 107 0 chr6 8829530 8829839 -173585403 + MLT1F LTR MaLR 199 540 -2 1313 261 177 13 chr6 8829841 8830543 -173584699 + L2 LINE L2 2487 3313 0 212 328 9 78 chr6 8830818 8830934 -173584308 + L3 LINE CR1 1431 1538 -39 1916 115 124 18 chr6 8831445 8831784 -173583458 - THE1C LTR MaLR 0 375 1 354 214 0 0 chr6 8832792 8832881 -173582361 + (CA)n Simple_repeat Simple_repeat 2 90 0 198 294 76 51 chr6 8832899 8833032 -173582210 - L2 LINE L2 -1220 2094 1953 1706 167 17 10 chr6 8833032 8833320 -173581922 + AluJo SINE Alu 3 292 -20 198 294 76 51 chr6 8833320 8833383 -173581859 - L2 LINE L2 -1361 1953 1893 370 256 142 11 chr6 8833390 8833566 -173581676 + MER58C DNA MER1_type 1 199 -16 224 302 28 47 chr6 8833727 8833833 -173581409 - MER5B DNA MER1_type -12 166 63 1939 139 0 0 chr6 8833836 8834109 -173581133 - AluSx SINE Alu 0 312 40 219 200 0 0 chr6 8834313 8834353 -173580889 - L2 LINE L2 -10 3303 3264 209 108 27 0 chr6 8834459 8834496 -173580746 + (TGGA)n Simple_repeat Simple_repeat 2 39 0 6710 52 38 0 chr6 8834695 8835916 -173579326 + L1PA6 LINE L1 4869 6154 0 619 257 138 5 chr6 8836823 8837041 -173578201 + MIR SINE MIR 16 262 0 1454 152 41 104 chr6 8837335 8837452 -173577790 + AluJo SINE Alu 1 124 -188 207 0 0 0 chr6 8837452 8837475 -173577767 + (TC)n Simple_repeat Simple_repeat 1 23 0 414 0 0 0 chr6 8837476 8837522 -173577720 + (TA)n Simple_repeat Simple_repeat 2 47 0 1454 152 41 104 chr6 8837522 8837718 -173577524 + AluJo SINE Alu 123 296 -16 2688 199 38 5 chr6 8837744 8838346 -173576896 - L1MB7 LINE L1 -43 6141 5520 265 359 0 0 chr6 8838927 8839019 -173576223 + (CATATA)n Simple_repeat Simple_repeat 3 94 0 763 313 100 9 chr6 8840756 8841175 -173574067 + L2 LINE L2 1854 2310 -1004 1861 186 36 46 chr6 8841187 8841740 -173573502 - MLT2A2 LTR ERVL 0 554 1 494 319 160 10 chr6 8841761 8842434 -173572808 + L2 LINE L2 2335 3210 -103 201 176 0 118 chr6 8842518 8842569 -173572673 + L2 LINE L2 3262 3306 -7 254 143 0 0 chr6 8844135 8844177 -173571065 + MLT1A2 LTR MaLR 2 43 -331 265 174 0 0 chr6 8844178 8844224 -173571018 + MLT1A2 LTR MaLR 158 203 -162 835 190 72 5 chr6 8844258 8844453 -173570789 + MLT1A2 LTR MaLR 166 373 -1 318 303 37 0 chr6 8844745 8844854 -173570388 - MIR SINE MIR -17 245 133 226 288 68 14 chr6 8844898 8844971 -173570271 - MIR SINE MIR -84 124 48 519 308 80 83 chr6 8845727 8846088 -173569154 - L2 LINE L2 -40 3232 2873 867 320 76 15 chr6 8846223 8846617 -173568625 - L2 LINE L2 -649 2665 2248 191 279 77 48 chr6 8847149 8847253 -173567989 - L2 LINE L2 -40 3273 3167 2161 127 0 13 chr6 8847598 8847914 -173567328 + AluSx SINE Alu 1 312 0 2157 83 42 10 chr6 8848537 8848825 -173566417 + AluSx SINE Alu 1 297 -15 282 29 0 0 chr6 8849515 8849550 -173565692 + (TG)n Simple_repeat Simple_repeat 2 36 0 35 24 0 0 chr6 8849679 8849721 -173565521 + AT_rich Low_complexity Low_complexity 1 42 0 2091 136 0 16 chr6 8849794 8850110 -173565132 + AluJb SINE Alu 1 311 -1 21 0 0 0 chr6 8850519 8850540 -173564702 + AT_rich Low_complexity Low_complexity 1 21 0 251 320 40 0 chr6 8850995 8851070 -173564172 + L2 LINE L2 3150 3227 -45 290 262 95 32 chr6 8851315 8851441 -173563801 + MER63A DNA MER1_type 69 202 -8 251 203 257 0 chr6 8852370 8852444 -173562798 + MER63 DNA MER1_type 1 719 -117 1148 171 38 79 chr6 8852444 8852760 -173562482 - MER58B DNA MER1_type 0 341 39 265 266 46 15 chr6 8852761 8852887 -173562355 + MER63 DNA MER1_type 695 1054 -8 2312 205 31 98 chr6 8853071 8853809 -173561433 - LTR8 LTR ERV1 -2 689 1 314 214 0 67 chr6 8854038 8854127 -173561115 - MER94 DNA DNA -40 94 12 367 202 32 11 chr6 8854773 8854867 -173560375 + MER103 DNA DNA 68 163 -3 1728 178 3 28 chr6 8855061 8855381 -173559861 - AluJb SINE Alu 0 312 1 388 312 159 6 chr6 8856205 8856362 -173558880 + MER5A DNA MER1_type 9 189 0 193 304 145 0 chr6 8856384 8856453 -173558789 + MIR SINE MIR 119 197 -65 1666 161 25 6 chr6 8856609 8856933 -173558309 + MLT1B LTR MaLR 1 330 -60 948 229 78 0 chr6 8856973 8857218 -173558024 + Tigger7 DNA MER2_type 1 264 -469 435 248 10 0 chr6 8857213 8857314 -173557928 + Tigger7 DNA MER2_type 2386 2487 0 * 187 235 41 85 chr6 8857827 8857932 -173557310 - MIR SINE MIR -66 196 118 1183 126 9 19 chr6 8857932 8858146 -173557096 + L1MA8 LINE L1 6076 6287 -4 187 235 41 85 chr6 8858146 8858192 -173557050 - MIR SINE MIR -144 118 71 1926 137 17 10 chr6 8860710 8861002 -173554240 + AluSx SINE Alu 1 294 -18 1091 191 70 101 chr6 8861388 8861786 -173553456 - MLT1B LTR MaLR 0 390 5 414 302 99 26 chr6 8862171 8862363 -173552879 + MIR3 SINE MIR 2 207 -1 349 322 16 71 chr6 8863804 8863987 -173551255 + MER5A DNA MER1_type 17 189 0 3070 211 49 54 chr6 8864041 8865903 -173549339 + L1ME1 LINE L1 4307 6161 -5 233 303 132 0 chr6 8866703 8866779 -173548463 - MIR SINE MIR -90 118 33 2652 119 5 121 chr6 8867246 8867330 -173547912 + MER84 LTR ERVI 1 93 -414 2298 184 44 75 chr6 8867330 8867961 -173547281 - LTR9 LTR ERV1 0 612 1 2652 119 5 121 chr6 8867961 8868448 -173546794 + MER84 LTR ERVI 93 506 -1 221 319 180 50 chr6 8868473 8868978 -173546264 + L2 LINE L2 2214 2784 -530 1190 184 104 43 chr6 8869534 8869908 -173545334 - L1MC2 LINE L1 0 6344 5948 1906 132 0 35 chr6 8869908 8870196 -173545046 - AluSx SINE Alu -11 301 24 333 295 62 62 chr6 8872183 8872410 -173542832 - L1ME3A LINE L1 -2 6164 5938 886 254 102 19 chr6 8872451 8873149 -173542093 - L1ME3A LINE L1 -218 5946 5152 * 1741 161 28 43 chr6 8873137 8873559 -173541683 - L1MD3 LINE L1 0 7995 7580 1101 285 85 34 chr6 8873754 8874261 -173540981 - L1ME3A LINE L1 -1225 4921 4350 2274 110 0 0 chr6 8874261 8874560 -173540682 - AluSx SINE Alu -13 299 1 1101 285 85 34 chr6 8874560 8874926 -173540316 - L1ME3A LINE L1 -1796 4350 4004 462 282 76 15 chr6 8874932 8875195 -173540047 - L1ME3A LINE L1 -2677 3469 3173 1731 174 3 40 chr6 8875195 8875516 -173539726 - AluJo SINE Alu -3 309 1 462 282 76 15 chr6 8875516 8875645 -173539597 - L1ME3A LINE L1 -2973 3173 3053 269 258 222 24 chr6 8875668 8875835 -173539407 - MIR SINE MIR -43 219 20 386 330 164 30 chr6 8876047 8876622 -173538620 + L2 LINE L2 1979 2630 -684 237 289 26 0 chr6 8877253 8877329 -173537913 - MIR SINE MIR -88 174 97 2031 152 11 19 chr6 8877541 8877909 -173537333 - MER47A DNA MER2_type -1 365 1 253 260 80 20 chr6 8878577 8878677 -173536565 + MIR SINE MIR 37 142 -66 255 140 0 0 chr6 8879306 8879356 -173535886 + (GA)n Simple_repeat Simple_repeat 1 50 0 421 288 77 56 chr6 8879618 8879955 -173535287 + L1MEd LINE L1 811 1154 -4965 472 265 114 30 chr6 8881488 8881654 -173533588 + MER5A DNA MER1_type 9 188 -1 322 316 120 8 chr6 8881724 8881841 -173533401 + L2 LINE L2 3143 3272 0 546 229 50 69 chr6 8882190 8882408 -173532834 + MER21B LTR ERV1 183 396 -467 601 165 106 41 chr6 8882704 8882729 -173532513 - Ricksha DNA DNA -2880 366 344 2770 72 59 56 chr6 8882729 8882768 -173532474 - MLT2A1 LTR ERVL 0 444 407 745 62 39 0 chr6 8882768 8882897 -173532345 + (TA)n Simple_repeat Simple_repeat 2 135 0 2770 72 59 56 chr6 8882897 8883300 -173531942 - MLT2A1 LTR ERVL -37 407 1 29371 58 11 3 chr6 8883300 8888858 -173526384 - HERVL-A1 LTR ERVL 0 5654 1 601 165 106 41 chr6 8883300 8883444 -173531798 - Ricksha DNA DNA -2902 344 186 * 2575 75 35 132 chr6 8888858 8889350 -173525892 - MLT2A1 LTR ERVL 0 444 1 1324 276 86 60 chr6 8889351 8889982 -173525260 - MER21B LTR ERV1 -193 670 24 198 0 0 0 chr6 8890095 8890117 -173525125 + (TTG)n Simple_repeat Simple_repeat 1 22 0 1058 180 38 38 chr6 8890391 8890652 -173524590 - MLT1A1 LTR MaLR 0 365 105 1730 169 77 6 chr6 8891426 8891764 -173523478 + MLT1A1 LTR MaLR 3 364 -1 30 0 0 0 chr6 8891869 8891899 -173523343 + AT_rich Low_complexity Low_complexity 1 30 0 2147 148 3 26 chr6 8892077 8892422 -173522820 - MER1B DNA MER1_type 0 337 1 23 0 0 0 chr6 8894237 8894260 -173520982 + AT_rich Low_complexity Low_complexity 1 23 0 297 213 47 147 chr6 8894497 8894708 -173520534 - L2 LINE L2 -2 3311 3122 222 253 218 59 chr6 8894945 8895147 -173520095 + L2 LINE L2 3039 3272 0 303 305 146 7 chr6 8895244 8895395 -173519847 + MLT1J LTR MaLR 106 277 -234 684 201 107 0 chr6 8895456 8895625 -173519617 + MIR SINE MIR 2 188 -74 206 296 157 17 chr6 8895787 8895902 -173519340 + L2 LINE L2 3137 3267 -5 21 89 0 0 chr6 8897295 8897351 -173517891 + AT_rich Low_complexity Low_complexity 1 56 0 207 0 0 0 chr6 8897438 8897461 -173517781 + (CAG)n Simple_repeat Simple_repeat 1 23 0 620 301 53 22 chr6 8897473 8897699 -173517543 - MIR SINE MIR -27 235 3 258 32 0 0 chr6 8897932 8897963 -173517279 + (CA)n Simple_repeat Simple_repeat 2 32 0 397 258 74 39 chr6 8898035 8898300 -173516942 + L1M4 LINE L1 4361 4622 -1524 359 274 201 11 chr6 8898569 8898843 -173516399 + L1M4 LINE L1 4977 5302 -844 29 47 0 0 chr6 8900746 8900789 -173514453 + AT_rich Low_complexity Low_complexity 1 43 0 2140 114 0 0 chr6 8901454 8901764 -173513478 - AluSg SINE Alu 0 310 1 1075 170 0 0 chr6 8902446 8902617 -173512625 - AluSg/x SINE Alu -9 303 133 2311 73 3 27 chr6 8903721 8904021 -173511221 - AluSq SINE Alu -20 293 1 22 0 0 0 chr6 8904550 8904572 -173510670 + AT_rich Low_complexity Low_complexity 1 22 0 269 306 0 0 chr6 8904842 8904914 -173510328 + MIR3 SINE MIR 85 156 -52 1120 160 5 5 chr6 8905607 8905801 -173509441 - MER46B DNA MER2_type 0 236 43 2470 93 8 8 chr6 8905801 8906154 -173509088 + THE1A LTR MaLR 1 353 -2 4951 115 24 0 chr6 8906157 8906876 -173508366 + THE1A-int LTR MaLR 1 736 -844 560 158 185 7 chr6 8906893 8907039 -173508203 - MER46B DNA MER2_type -189 47 1 29 60 0 0 chr6 8908329 8908379 -173506863 + AT_rich Low_complexity Low_complexity 1 50 0 1939 152 30 0 chr6 8910059 8910179 -173505063 + AluJo SINE Alu 1 116 -196 252 0 0 0 chr6 8910179 8910207 -173505035 + (TAAAA)n Simple_repeat Simple_repeat 3 30 0 1939 152 30 0 chr6 8910207 8910388 -173504854 + AluJo SINE Alu 116 311 -1 584 270 110 30 chr6 8911972 8912209 -173503033 + MIR SINE MIR 2 257 -5 648 270 128 47 chr6 8912306 8912650 -173502592 + L2 LINE L2 2244 2615 -699 29 0 0 0 chr6 8913491 8913520 -173501722 + AT_rich Low_complexity Low_complexity 1 29 0 21 0 0 0 chr6 8913624 8913645 -173501597 + AT_rich Low_complexity Low_complexity 1 21 0 207 200 20 0 chr6 8914871 8914921 -173500321 + CT-rich Low_complexity Low_complexity 2 52 0 579 302 156 21 chr6 8916336 8916757 -173498485 + L2 LINE L2 2581 3070 -243 2150 107 4 0 chr6 8916939 8917220 -173498022 - AluSx SINE Alu -28 284 3 561 339 103 21 chr6 8917448 8917787 -173497455 + LTR16C LTR ERVL 123 489 -2 1078 113 17 0 chr6 8918168 8918345 -173496897 + (TTTC)n Simple_repeat Simple_repeat 1 180 0 579 194 22 22 chr6 8918362 8918542 -173496700 + CT-rich Low_complexity Low_complexity 1 180 0 1814 135 57 7 chr6 8918542 8918824 -173496418 - AluSx SINE Alu -16 296 1 483 303 7 7 chr6 8918844 8918986 -173496256 + HERVL LTR ERVL 4471 4612 -1042 396 0 0 0 chr6 8919047 8919091 -173496151 + (CA)n Simple_repeat Simple_repeat 2 45 0 508 279 7 0 chr6 8919254 8919390 -173495852 - L2 LINE L2 -1208 2106 1970 700 313 36 24 chr6 8919440 8919689 -173495553 + MIR SINE MIR 9 260 -2 501 293 54 20 chr6 8919876 8920023 -173495219 - L2 LINE L2 -4 3268 3117 1508 172 19 14 chr6 8920463 8920545 -173494697 - MER33 DNA MER1_type -2261 324 244 2243 99 0 7 chr6 8920545 8920847 -173494395 + AluSx SINE Alu 1 300 -12 1508 172 19 14 chr6 8920847 8921099 -173494143 - MER33 DNA MER1_type -2341 244 1 1749 157 3 63 chr6 8921155 8921486 -173493756 + AluJb SINE Alu 1 311 -1 1854 128 75 12 chr6 8922346 8922681 -173492561 - MER46B DNA MER2_type -1 235 5 631 157 26 9 chr6 8922723 8922838 -173492404 - MLT1D LTR MaLR 0 505 389 527 216 0 0 chr6 8922839 8922941 -173492301 + FLAM_C SINE Alu 5 106 -37 206 31 0 31 chr6 8922966 8922998 -173492244 + (CATA)n Simple_repeat Simple_repeat 2 32 0 1043 206 58 51 chr6 8922998 8923048 -173492194 - MLT1D LTR MaLR -102 403 355 4265 108 15 11 chr6 8923048 8923658 -173491584 - LTR9 LTR ERV1 0 612 1 1043 206 58 51 chr6 8923658 8923883 -173491359 - MLT1D LTR MaLR -150 355 126 4907 57 2 0 chr6 8923886 8924496 -173490746 - L1PA6 LINE L1 0 6154 5544 8064 69 3 2 chr6 8924496 8925560 -173489682 - L1PA6 LINE L1 -3382 2764 1700 4584 97 14 6 chr6 8925568 8926226 -173489016 - PABL_B LTR ERV1 0 667 5 332 307 104 43 chr6 8926279 8926442 -173488800 - LTR16C LTR ERVL -223 268 96 2102 254 11 20 chr6 8926452 8926686 -173488556 - MER90 LTR ERV1 -25 550 315 2290 96 3 3 chr6 8926686 8926989 -173488253 - AluSg SINE Alu -7 303 1 2102 254 11 20 chr6 8926989 8927309 -173487933 - MER90 LTR ERV1 -260 315 1 1955 229 44 44 chr6 8927458 8927978 -173487264 - MLT1E3 LTR MaLR 0 624 105 1872 196 35 84 chr6 8928012 8928291 -173486951 - L1ME1 LINE L1 -306 5860 5622 2337 87 6 6 chr6 8928291 8928602 -173486640 + AluSq SINE Alu 1 311 -2 1872 196 35 84 chr6 8928602 8928893 -173486349 - L1ME1 LINE L1 -544 5622 5318 509 208 0 0 chr6 8928945 8929065 -173486177 - L1MA9 LINE L1 -33 6279 6160 * 1025 202 42 21 chr6 8929058 8929266 -173485976 - L1ME1 LINE L1 -844 5302 5083 507 113 0 0 chr6 8929266 8929346 -173485896 + MADE1 DNA Mariner 1 80 0 1025 202 42 21 chr6 8929346 8929469 -173485773 - L1ME1 LINE L1 -1063 5083 4964 370 245 29 22 chr6 8929465 8929604 -173485638 - L1M1 LINE L1 -4640 2925 2786 * 32 81 0 0 chr6 8930132 8930206 -173485036 + AT_rich Low_complexity Low_complexity 1 74 0 30 59 0 0 chr6 8930367 8930418 -173484824 + AT_rich Low_complexity Low_complexity 1 51 0 216 158 0 0 chr6 8931384 8931422 -173483820 + (TATG)n Simple_repeat Simple_repeat 1 38 0 186 43 0 0 chr6 8931422 8931445 -173483797 + (CA)n Simple_repeat Simple_repeat 1 23 0 2169 123 3 0 chr6 8932030 8932331 -173482911 - AluSx SINE Alu -6 306 5 200 407 0 0 chr6 8933204 8933285 -173481957 + MIR SINE MIR 16 96 -112 265 296 209 26 chr6 8933440 8933555 -173481687 + L2 LINE L2 3137 3272 0 26 0 0 0 chr6 8934048 8934074 -173481168 + AT_rich Low_complexity Low_complexity 1 26 0 409 302 259 31 chr6 8934956 8935307 -173479935 + L3 LINE CR1 1132 1562 -15 439 77 0 0 chr6 8935664 8935729 -173479513 - L1PA16 LINE L1 -4 7600 7536 11877 207 25 22 chr6 8935730 8938003 -173477239 - L1PA16 LINE L1 -105 7499 5234 2003 136 0 3 chr6 8938003 8938297 -173476945 - AluSx SINE Alu -17 295 3 11877 207 25 22 chr6 8938297 8939110 -173476132 - L1PA16 LINE L1 -2370 5234 4425 1887 159 0 0 chr6 8939110 8939418 -173475824 - AluSx SINE Alu -4 308 1 11877 207 25 22 chr6 8939418 8940620 -173474622 - L1PA16 LINE L1 -3179 4425 3197 2018 154 0 0 chr6 8940620 8940925 -173474317 - AluSx SINE Alu -7 305 1 11877 207 25 22 chr6 8940925 8941922 -173473320 - L1PA16 LINE L1 -4407 3197 2204 27 62 0 0 chr6 8942898 8942946 -173472296 + AT_rich Low_complexity Low_complexity 1 48 0 2094 152 82 14 chr6 8943000 8943363 -173471879 - L1MC2 LINE L1 -170 6174 5778 204 40 0 0 chr6 8943363 8943388 -173471854 + (GCATG)n Simple_repeat Simple_repeat 5 29 0 2094 152 82 14 chr6 8943388 8943438 -173471804 - L1MC2 LINE L1 -566 5778 5733 28 48 0 0 chr6 8943631 8943673 -173471569 + AT_rich Low_complexity Low_complexity 1 42 0 1562 206 21 45 chr6 8943826 8944200 -173471042 + MLT1A1 LTR MaLR 1 365 0 198 0 0 0 chr6 8944244 8944266 -173470976 + (A)n Simple_repeat Simple_repeat 1 22 0 1009 328 22 9 chr6 8944266 8944583 -173470659 - L3 LINE CR1 -25 1552 1232 499 263 8 8 chr6 8944703 8944821 -173470421 - L2 LINE L2 0 3272 3155 212 433 0 0 chr6 8944877 8945011 -173470231 - L2 LINE L2 -335 2978 2845 378 123 37 49 chr6 8945026 8945107 -173470135 + L1MA5A LINE L1 6218 6297 0 1950 232 88 17 chr6 8945113 8945635 -173469607 + MLT1F1 LTR MaLR 9 567 0 488 265 123 0 chr6 8945643 8945813 -173469429 - MLT1L LTR MaLR -1 614 424 1078 275 109 73 chr6 8945998 8946204 -173469038 - L2 LINE L2 -791 2523 2326 2065 98 11 21 chr6 8946204 8946491 -173468751 - AluSq SINE Alu -27 286 3 1078 275 109 73 chr6 8946491 8947189 -173468053 - L2 LINE L2 -988 2326 1586 658 272 94 22 chr6 8947303 8947527 -173467715 + MIR SINE MIR 2 241 -21 274 346 52 52 chr6 8950901 8951037 -173464205 - L2 LINE L2 -19 3253 3118 420 277 42 43 chr6 8951117 8951330 -173463912 - MIR SINE MIR -12 250 33 344 138 15 0 chr6 8951620 8951685 -173463557 + (CA)n Simple_repeat Simple_repeat 2 67 0 1642 135 97 4 chr6 8952039 8952331 -173462911 - AluSx SINE Alu 0 316 1 1193 279 59 20 chr6 8952377 8952868 -173462374 - L1ME3A LINE L1 -280 5890 5381 183 42 0 0 chr6 8952968 8952992 -173462250 + (TTG)n Simple_repeat Simple_repeat 2 25 0 985 185 6 0 chr6 8952994 8953156 -173462086 - AluJb SINE Alu -15 297 135 1997 127 14 46 chr6 8953168 8953515 -173461727 - THE1C LTR MaLR -39 336 1 805 156 0 0 chr6 8953535 8953657 -173461585 - AluJb SINE Alu -190 122 1 1319 289 90 48 chr6 8953660 8955088 -173460154 - L1ME3A LINE L1 -865 5281 3794 1177 195 71 68 chr6 8955077 8955201 -173460041 - L1M4 LINE L1 -895 5645 5523 * 1609 157 38 11 chr6 8955201 8955488 -173459754 - AluSx SINE Alu -17 295 1 1177 195 71 68 chr6 8955488 8955788 -173459454 - L1M4 LINE L1 -1017 5523 5220 1299 276 126 31 chr6 8955902 8956446 -173458796 - MER77 LTR ERV1 -4 601 54 559 233 105 9 chr6 8956552 8956780 -173458462 - L1MEc LINE L1 -2591 3949 3700 2486 243 50 95 chr6 8956787 8957022 -173458220 - L1MEc LINE L1 -2994 3546 3302 1784 151 3 20 chr6 8957022 8957314 -173457928 + AluJb SINE Alu 5 291 -21 2486 243 50 95 chr6 8957314 8958501 -173456741 - L1MEc LINE L1 -3238 3302 2063 1853 102 14 0 chr6 8958501 8958776 -173456466 - L1MA3 LINE L1 0 6305 6027 2486 243 50 95 chr6 8958776 8958833 -173456409 - L1MEc LINE L1 -4477 2063 2005 2017 131 0 0 chr6 8958833 8959131 -173456111 + AluSp SINE Alu 1 298 -15 2486 243 50 95 chr6 8959131 8960208 -173455034 - L1MEc LINE L1 -4535 2005 1137 25 31 0 0 chr6 8960226 8960258 -173454984 + AT_rich Low_complexity Low_complexity 1 32 0 1968 248 72 22 chr6 8960400 8960952 -173454290 - L1MEc LINE L1 -5934 606 27 1336 286 54 20 chr6 8960961 8961698 -173453544 - L1MEc LINE L1 -5571 825 34 549 313 62 62 chr6 8961698 8961796 -173453446 - L1MDa LINE L1 -4455 1674 1577 411 56 0 0 chr6 8961796 8961850 -173453392 + (TCTA)n Simple_repeat Simple_repeat 2 55 0 549 313 62 62 chr6 8961850 8962221 -173453021 - L1MDa LINE L1 -4551 1578 1205 551 276 21 72 chr6 8962231 8962619 -173452623 - L1MDa LINE L1 -4908 1211 844 5681 207 47 33 chr6 8964565 8966976 -173448266 + L1MB7 LINE L1 3730 6168 -16 21 71 0 0 chr6 8967293 8967335 -173447907 + AT_rich Low_complexity Low_complexity 1 42 0 2224 102 0 37 chr6 8968396 8968720 -173446522 + AluSx SINE Alu 1 312 0 306 310 17 9 chr6 8968857 8968973 -173446269 + MIR SINE MIR 140 256 -6 4933 54 6 2 chr6 8968985 8969615 -173445627 - L1P LINE L1 -1715 4431 3799 886 60 8 45 chr6 8969567 8969700 -173445542 + L1PA4 LINE L1 6027 6154 -1 * 537 299 50 85 chr6 8969752 8969938 -173445304 - MLT1J LTR MaLR -52 459 291 2131 116 0 0 chr6 8969938 8970230 -173445012 + AluSx SINE Alu 6 297 -15 537 299 50 85 chr6 8970230 8970407 -173444835 - MLT1J LTR MaLR -220 291 109 23 54 0 0 chr6 8970572 8970609 -173444633 + AT_rich Low_complexity Low_complexity 1 37 0 325 350 88 26 chr6 8970669 8970975 -173444267 + L1M4 LINE L1 3584 3908 -2238 244 309 90 50 chr6 8971406 8971972 -173443270 + L1M4 LINE L1 4488 5076 -1070 322 288 73 14 chr6 8972068 8972208 -173443034 + MER20 DNA MER1_type 46 195 -24 643 219 71 129 chr6 8972986 8973248 -173441994 - MLT1L LTR MaLR -27 588 236 237 276 14 7 chr6 8973315 8973398 -173441844 + GA-rich Low_complexity Low_complexity 1 146 0 375 227 277 7 chr6 8973411 8973552 -173441690 - MER5A DNA MER1_type -2 187 9 471 244 70 70 chr6 8974470 8974642 -173440600 + MER91B DNA MER1_type 11 182 -8 514 133 14 147 chr6 8975029 8975172 -173440070 + LOR1-int LTR ERV1 6830 6953 -1167 207 0 0 0 chr6 8975185 8975208 -173440034 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 6678 110 20 3 chr6 8975213 8976990 -173438252 - L1PA8 LINE L1 -15 6157 4349 1981 113 3 0 chr6 8977004 8977288 -173437954 + L1P LINE L1 4707 4991 -1155 5025 104 1 1 chr6 8977296 8978007 -173437235 - L1PA8 LINE L1 -1800 4346 3636 1967 147 20 11 chr6 8978007 8978355 -173436887 + MER72 LTR ERV1 344 694 -28 22 0 0 0 chr6 8978355 8978377 -173436865 + AT_rich Low_complexity Low_complexity 1 22 0 21 0 0 0 chr6 8978386 8978407 -173436835 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr6 8979625 8979646 -173435596 + AT_rich Low_complexity Low_complexity 1 21 0 2081 123 3 19 chr6 8980278 8980586 -173434656 + AluSx SINE Alu 1 303 -9 1257 316 89 12 chr6 8980654 8981138 -173434104 + MLT1G1 LTR MaLR 75 595 0 935 220 16 0 chr6 8981758 8981944 -173433298 - MER5A DNA MER1_type 0 189 1 253 286 18 0 chr6 8982053 8982109 -173433133 - L2 LINE L2 -11 3261 3205 21 36 0 0 chr6 8983572 8983600 -173431642 + AT_rich Low_complexity Low_complexity 1 28 0 324 70 0 0 chr6 8983925 8983968 -173431274 + (TG)n Simple_repeat Simple_repeat 1 43 0 506 280 21 38 chr6 8985363 8985549 -173429693 + MIR SINE MIR 60 242 -20 2057 143 125 13 chr6 8986438 8986823 -173428419 + MSTA LTR MaLR 1 428 0 365 22 0 0 chr6 8986932 8986978 -173428264 - MADE1 DNA Mariner -1 79 34 22 0 0 0 chr6 8987576 8987598 -173427644 + AT_rich Low_complexity Low_complexity 1 22 0 652 216 242 5 chr6 8987609 8987803 -173427439 + MIR SINE MIR 2 241 -21 192 179 0 0 chr6 8988264 8988303 -173426939 + (CAA)n Simple_repeat Simple_repeat 1 39 0 783 298 129 51 chr6 8988831 8989382 -173425860 - L1ME4a LINE L1 -48 6073 5480 612 336 14 14 chr6 8989413 8989621 -173425621 + MIR SINE MIR 55 262 0 253 263 66 13 chr6 8989643 8989719 -173425523 - L1ME4a LINE L1 -659 5462 5383 2256 101 0 0 chr6 8989742 8990039 -173425203 - AluSg SINE Alu -13 297 1 395 310 91 5 chr6 8990091 8990278 -173424964 + LTR16A LTR ERVL 1 203 -247 1723 172 8 87 chr6 8990279 8990657 -173424585 - MER7A DNA MER2_type 0 346 1 383 253 120 90 chr6 8990657 8990889 -173424353 + LTR16A LTR ERVL 203 441 -9 252 226 12 24 chr6 8991052 8991136 -173424106 - L1MB8 LINE L1 -37 6141 6059 22 35 0 0 chr6 8991566 8991595 -173423647 + AT_rich Low_complexity Low_complexity 1 29 0 620 165 132 8 chr6 8991602 8991723 -173423519 + FRAM SINE Alu 23 158 -18 2123 125 0 7 chr6 8992016 8992321 -173422921 + AluSx SINE Alu 1 303 -9 255 215 13 25 chr6 8992326 8992405 -173422837 + L1MB8 LINE L1 6059 6136 -42 23 33 0 0 chr6 8992555 8992585 -173422657 + AT_rich Low_complexity Low_complexity 1 30 0 657 181 9 0 chr6 8993360 8993476 -173421766 + FLAM_C SINE Alu 1 117 -16 24 32 0 0 chr6 8993652 8993683 -173421559 + AT_rich Low_complexity Low_complexity 1 31 0 223 290 43 0 chr6 8995766 8995835 -173419407 - MIR SINE MIR -13 249 178 303 250 0 0 chr6 8995944 8996016 -173419226 + L1ME1 LINE L1 28 99 -6297 234 0 0 0 chr6 8996027 8996053 -173419189 + (A)n Simple_repeat Simple_repeat 1 26 0 4604 271 72 17 chr6 8996055 8998892 -173416350 + L1ME1 LINE L1 1308 4277 -1938 2373 226 104 43 chr6 8998897 9000120 -173415122 + L1ME1 LINE L1 4772 6099 -136 2166 86 0 7 chr6 9000120 9000428 -173414814 + AluSc SINE Alu 1 306 0 2373 226 104 43 chr6 9000428 9000569 -173414673 + L1ME1 LINE L1 6099 6230 -5 1184 110 0 0 chr6 9000716 9000889 -173414353 + L1PA8A LINE L1 3764 3936 -2210 307 107 0 0 chr6 9000886 9000942 -173414300 + L1 LINE L1 4794 4849 -1297 * 3122 103 9 0 chr6 9000948 9001403 -173413839 + L1PA8A LINE L1 4143 4601 -1545 5856 91 16 17 chr6 9001404 9002839 -173412403 + L1PA8A LINE L1 4690 6128 -3 34 0 0 0 chr6 9002839 9002873 -173412369 + AT_rich Low_complexity Low_complexity 1 34 0 22 0 0 0 chr6 9003028 9003050 -173412192 + AT_rich Low_complexity Low_complexity 1 22 0 189 0 0 0 chr6 9003187 9003208 -173412034 + (T)n Simple_repeat Simple_repeat 1 21 0 245 268 24 24 chr6 9003812 9003911 -173411331 - MER5A DNA MER1_type -87 102 4 798 269 197 14 chr6 9004005 9004437 -173410805 - MLT1J LTR MaLR 0 511 1 267 311 78 11 chr6 9004490 9004580 -173410662 + MIR3 SINE MIR 63 158 -50 22 0 0 0 chr6 9005663 9005685 -173409557 + AT_rich Low_complexity Low_complexity 1 22 0 961 238 135 82 chr6 9005824 9006552 -173408690 - LTR41 LTR ERVL -7 766 1 253 327 58 29 chr6 9006778 9006882 -173408360 - MIR3 SINE MIR -36 172 66 701 273 98 35 chr6 9006889 9007175 -173408067 - L2 LINE L2 -4 3309 3006 354 123 0 0 chr6 9010670 9010727 -173404515 + (TG)n Simple_repeat Simple_repeat 1 57 0 8778 129 21 9 chr6 9011175 9012546 -173402696 + Tigger1 DNA MER2_type 31 1417 -1001 2429 151 47 7 chr6 9012543 9012967 -173402275 + Tigger1 DNA MER2_type 1977 2417 -1 * 215 286 39 39 chr6 9013580 9013657 -173401585 + MIR SINE MIR 2 78 -184 342 315 142 6 chr6 9013801 9013963 -173401279 + MLT1J2 LTR MaLR 124 307 -143 450 317 116 9 chr6 9014425 9014649 -173400593 - MIR SINE MIR -7 255 8 748 305 141 14 chr6 9015401 9015874 -173399368 - L2 LINE L2 -4 3309 2768 257 325 60 0 chr6 9015888 9016005 -173399237 - MIR SINE MIR -65 197 74 550 314 50 0 chr6 9016158 9016317 -173398925 - MIR SINE MIR -73 189 23 1962 142 3 7 chr6 9016463 9016759 -173398483 - AluSx SINE Alu -15 297 3 446 264 82 43 chr6 9017179 9017346 -173397896 - L1MEd LINE L1 -4880 1239 1055 1812 159 0 26 chr6 9017346 9017654 -173397588 - AluJo SINE Alu -12 300 1 446 264 82 43 chr6 9017654 9017766 -173397476 - L1MEd LINE L1 -5064 1055 949 1048 223 26 108 chr6 9017782 9017990 -173397252 - L1ME2 LINE L1 -8 6156 5997 2553 43 3 0 chr6 9017990 9018291 -173396951 + AluY SINE Alu 1 302 -9 1048 223 26 108 chr6 9018291 9018500 -173396742 - L1ME2 LINE L1 -167 5997 5773 880 306 121 16 chr6 9019727 9020165 -173395077 + L1ME LINE L1 740 1223 -5200 645 234 100 65 chr6 9020190 9020737 -173394505 + L1ME LINE L1 1291 1833 -4887 1629 238 25 39 chr6 9020764 9021490 -173393752 + L1ME LINE L1 5750 6458 -503 207 69 0 0 chr6 9021490 9021519 -173393723 + (CA)n Simple_repeat Simple_repeat 2 30 0 1629 238 25 39 chr6 9021519 9021630 -173393612 + L1ME LINE L1 6458 6569 -392 22 70 0 0 chr6 9021723 9021766 -173393476 + AT_rich Low_complexity Low_complexity 1 43 0 25 0 0 0 chr6 9021982 9022007 -173393235 + AT_rich Low_complexity Low_complexity 1 25 0 4334 195 20 27 chr6 9022132 9022987 -173392255 - MER21B LTR ERV1 -14 849 1 257 298 35 94 chr6 9025304 9025475 -173389767 + L2 LINE L2 2953 3113 -159 2085 112 0 0 chr6 9025521 9025808 -173389434 + AluSg SINE Alu 21 307 -3 36 40 0 0 chr6 9025887 9025937 -173389305 + AT_rich Low_complexity Low_complexity 1 50 0 2010 128 0 28 chr6 9026521 9026842 -173388400 - AluJb SINE Alu 0 312 1 24 0 0 0 chr6 9028279 9028303 -173386939 + AT_rich Low_complexity Low_complexity 1 24 0 270 0 0 0 chr6 9029106 9029136 -173386106 + (CA)n Simple_repeat Simple_repeat 2 31 0 202 219 0 0 chr6 9029461 9029502 -173385740 - L2 LINE L2 -1 3312 3272 269 381 60 16 chr6 9029654 9029903 -173385339 - L2 LINE L2 -243 3070 2811 585 293 55 30 chr6 9030099 9030427 -173384815 - L1ME4a LINE L1 -263 5858 5523 205 375 26 40 chr6 9032329 9032481 -173382761 + L2 LINE L2 2608 2757 -557 263 289 67 0 chr6 9033237 9033341 -173381901 - MIR SINE MIR -31 231 121 604 285 131 9 chr6 9034799 9035013 -173380229 - MIR SINE MIR -1 261 22 22 0 0 0 chr6 9036404 9036426 -173378816 + AT_rich Low_complexity Low_complexity 1 22 0 263 276 99 26 chr6 9036593 9036787 -173378455 - MIR SINE MIR -41 221 20 383 257 44 26 chr6 9037433 9037546 -173377696 + MIR SINE MIR 81 195 -67 500 308 114 17 chr6 9038649 9039087 -173376155 - LTR33 LTR ERVL -1 520 17 * 616 333 68 30 chr6 9039072 9039438 -173375804 - MLT1I LTR MaLR -28 381 2 2154 110 30 0 chr6 9039593 9039893 -173375349 - AluSx SINE Alu -3 309 1 676 308 164 28 chr6 9040698 9041094 -173374148 + LTR16C LTR ERVL 42 491 0 222 233 0 0 chr6 9041429 9041472 -173373770 + (TATATG)n Simple_repeat Simple_repeat 5 47 0 2056 132 49 37 chr6 9042011 9042421 -173372821 + L1MA4 LINE L1 5886 6300 0 496 320 128 5 chr6 9043070 9043273 -173371969 - MLT1J1 LTR MaLR -4 442 215 1025 342 76 35 chr6 9043278 9043884 -173371358 + L2 LINE L2 2141 2771 -543 459 229 65 65 chr6 9043871 9044072 -173371170 + L2 LINE L2 3113 3313 0 * 243 0 0 0 chr6 9044828 9044855 -173370387 + (TG)n Simple_repeat Simple_repeat 1 27 0 408 238 144 50 chr6 9044858 9045018 -173370224 + MER91B DNA MER1_type 6 180 -10 180 111 0 0 chr6 9045976 9046003 -173369239 + (T)n Simple_repeat Simple_repeat 1 27 0 7900 11 1 0 chr6 9046023 9047632 -173367610 - L1PA2 LINE L1 0 6155 4546 427 276 82 102 chr6 9047733 9047858 -173367384 - L2 LINE L2 -34 3238 3112 2357 97 0 0 chr6 9047858 9048157 -173367085 - AluSx SINE Alu -13 299 1 427 276 82 102 chr6 9048157 9048335 -173366907 - L2 LINE L2 -160 3112 2941 32 0 0 0 chr6 9048354 9048386 -173366856 + AT_rich Low_complexity Low_complexity 1 32 0 2901 126 0 0 chr6 9048386 9048815 -173366427 - L1PA15 LINE L1 -10 6155 5727 2208 120 0 0 chr6 9048815 9049116 -173366126 - AluSc SINE Alu -8 301 1 211 346 95 35 chr6 9049212 9049527 -173365715 - L2 LINE L2 -452 2862 2529 374 325 90 5 chr6 9051769 9051957 -173363285 + MIR SINE MIR 21 224 -38 23 0 0 0 chr6 9051963 9051986 -173363256 + AT_rich Low_complexity Low_complexity 1 23 0 324 194 153 51 chr6 9052968 9053066 -173362176 - MIR3 SINE MIR -18 190 83 1721 74 12 19 chr6 9053585 9053841 -173361401 - MER11A LTR ERVK 0 1266 1013 687 151 7 20 chr6 9054324 9054476 -173360766 + CT-rich Low_complexity Low_complexity 2 151 0 1769 144 102 18 chr6 9054929 9055263 -173359979 - MLT1A1 LTR MaLR 0 365 4 1578 209 0 17 chr6 9055281 9055583 -173359659 - AluJo SINE Alu -15 297 1 391 148 23 0 chr6 9055876 9055964 -173359278 + CT-rich Low_complexity Low_complexity 3 92 0 231 173 0 0 chr6 9056490 9056542 -173358700 + C-rich Low_complexity Low_complexity 4 55 0 233 352 19 19 chr6 9056666 9056771 -173358471 - MIR3 SINE MIR -11 197 93 255 281 0 0 chr6 9056987 9057051 -173358191 + (CATA)n Simple_repeat Simple_repeat 4 67 0 180 77 0 0 chr6 9057293 9057319 -173357923 + (TA)n Simple_repeat Simple_repeat 2 27 0 237 65 0 0 chr6 9057363 9057394 -173357848 + (TG)n Simple_repeat Simple_repeat 2 32 0 2288 102 3 0 chr6 9058381 9058676 -173356566 - AluSp SINE Alu -17 296 1 21 0 0 0 chr6 9058896 9058917 -173356325 + AT_rich Low_complexity Low_complexity 1 21 0 276 30 0 0 chr6 9059399 9059432 -173355810 + (TG)n Simple_repeat Simple_repeat 1 33 0 593 236 156 31 chr6 9059808 9060033 -173355209 + MER112 DNA MER1_type 1 253 -7 1859 148 17 10 chr6 9060519 9060817 -173354425 - AluSx SINE Alu -12 300 1 22 70 0 0 chr6 9062004 9062047 -173353195 + AT_rich Low_complexity Low_complexity 1 43 0 1418 179 54 24 chr6 9062336 9062633 -173352609 - AluJo SINE Alu -6 306 1 494 269 40 120 chr6 9063352 9063701 -173351541 - MLT1K LTR MaLR -2 586 266 459 0 0 0 chr6 9063710 9063761 -173351481 + (TG)n Simple_repeat Simple_repeat 1 51 0 6726 60 19 2 chr6 9063763 9065469 -173349773 - L1PA7 LINE L1 -3 6151 4423 15419 105 8 3 chr6 9065470 9067745 -173347497 + L1P LINE L1 1490 3775 -2371 22 0 0 0 chr6 9068545 9068567 -173346675 + AT_rich Low_complexity Low_complexity 1 22 0 501 308 27 7 chr6 9068715 9068861 -173346381 + MIR3 SINE MIR 56 204 -4 393 58 0 0 chr6 9069895 9069947 -173345295 + (CA)n Simple_repeat Simple_repeat 2 53 0 296 130 14 0 chr6 9070332 9070401 -173344841 + (TA)n Simple_repeat Simple_repeat 2 71 0 220 77 96 0 chr6 9070464 9070516 -173344726 + (TA)n Simple_repeat Simple_repeat 2