18627 40 0 1 chr3 0 2422 -227522156 - L1P LINE L1 -1647 4499 2079 1723 94 0 0 chr3 2421 2665 -227521913 + L1P LINE L1 729 972 -5174 * 532 246 43 21 chr3 3767 3954 -227520624 - L1MC4a LINE L1 -1873 5935 5745 265 286 76 34 chr3 3990 4109 -227520469 - MIR SINE MIR -71 191 68 1332 175 21 79 chr3 4269 4560 -227520018 + AluJb SINE Alu 21 294 -18 17859 130 17 12 chr3 5041 8095 -227516483 - L1P LINE L1 -3067 3079 11 371 234 30 72 chr3 8116 8283 -227516295 - L1 LINE L1 -3763 2383 2224 692 217 136 77 chr3 8821 9023 -227515555 - MIR SINE MIR -12 250 31 1700 213 7 3 chr3 9023 9333 -227515245 - AluJb SINE Alu -1 311 1 692 217 136 77 chr3 9333 9365 -227515213 - MIR SINE MIR -231 31 2 202 234 172 0 chr3 9711 9775 -227514803 - MIR SINE MIR -30 232 158 260 343 19 28 chr3 10716 10824 -227513754 - MIR SINE MIR -76 132 26 2576 108 44 33 chr3 11347 11828 -227512750 + LTR21A LTR ERV1 1 486 -19 207 323 15 0 chr3 12130 12195 -227512383 + MIR3 SINE MIR 134 199 -9 468 265 81 27 chr3 12749 12934 -227511644 - MIR SINE MIR -28 234 40 237 326 93 29 chr3 12940 13284 -227511294 + L1MC4a LINE L1 4804 5169 -977 1576 162 3 73 chr3 13374 13689 -227510889 + AluJb SINE Alu 1 293 -19 1381 243 107 28 chr3 13710 14291 -227510287 + L1MC4a LINE L1 5298 5924 -1884 2450 203 15 48 chr3 14718 15369 -227509209 - LTR27 LTR ERV1 0 636 7 358 175 98 63 chr3 15593 15736 -227508842 - LTR23-int LTR ERV1 -337 4786 4639 7916 75 3 1 chr3 15751 16878 -227507700 - L1P LINE L1 -4055 2091 962 691 315 40 11 chr3 17078 17653 -227506925 - L1 LINE L1 -1076 5070 4474 1884 181 3 3 chr3 17653 17957 -227506621 - AluJb SINE Alu -8 304 1 691 315 40 11 chr3 17957 17968 -227506610 - L1 LINE L1 -1672 4474 4465 40012 53 7 3 chr3 18000 24048 -227500530 + L1PA3 LINE L1 9 6083 -72 5811 50 0 0 chr3 24148 24869 -227499709 + L1PA3 LINE L1 5435 6155 0 207 0 0 0 chr3 24873 24896 -227499682 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 4121 235 27 12 chr3 24897 26599 -227497979 - L1PA13 LINE L1 -3771 3026 1285 845 224 49 20 chr3 26713 26959 -227497619 - L1MB7 LINE L1 -105 7498 7246 426 188 60 0 chr3 26956 27073 -227497505 - L1MB7 LINE L1 -914 6651 6528 * 1115 218 74 4 chr3 27173 27402 -227497176 + AluJb SINE Alu 1 245 -67 6983 188 43 19 chr3 27413 30113 -227494465 - L1MB7 LINE L1 -2083 5482 2715 988 53 30 0 chr3 30134 30266 -227494312 - L1PA4 LINE L1 -3 6152 6017 2431 147 70 3 chr3 30266 30850 -227493728 - THE1C-int LTR MaLR -960 691 1 2404 143 8 0 chr3 30850 31222 -227493356 - THE1C LTR MaLR 0 375 1 556 83 21 10 chr3 31275 31371 -227493207 + (TCTA)n Simple_repeat Simple_repeat 3 99 0 24 67 0 0 chr3 31384 31429 -227493149 + AT_rich Low_complexity Low_complexity 1 45 0 21 57 0 0 chr3 31556 31591 -227492987 + AT_rich Low_complexity Low_complexity 1 35 0 1341 147 0 0 chr3 31869 32101 -227492477 + L1PA11 LINE L1 2408 2639 -3507 13937 178 18 3 chr3 32202 35788 -227488790 + L1PA11 LINE L1 2596 6168 -6 2023 128 39 62 chr3 35789 36011 -227488567 + L1M1 LINE L1 3067 3293 -4272 6793 74 0 6 chr3 36011 37413 -227487165 - L1PA5 LINE L1 -3 6151 4752 2023 128 39 62 chr3 37413 37704 -227486874 + L1M1 LINE L1 3293 3568 -3997 39876 61 1 0 chr3 37704 43716 -227480862 + L1PA4 LINE L1 1 6019 -136 1518 56 0 0 chr3 43816 44014 -227480564 + L1P LINE L1 3456 3653 -2493 439 91 15 0 chr3 44013 44079 -227480499 - L1M1 LINE L1 -576 5726 5660 * 6172 148 15 6 chr3 44076 45305 -227479273 + L1MA1 LINE L1 5063 6302 0 1942 127 95 24 chr3 45317 45382 -227479196 + L1PA15 LINE L1 5769 5828 -337 2351 141 11 13 chr3 45382 45758 -227478820 + THE1C LTR MaLR 1 375 0 1942 127 95 24 chr3 45758 46062 -227478516 + L1PA15 LINE L1 5828 6164 -1 384 228 10 0 chr3 46066 46167 -227478411 + L1MB7 LINE L1 6065 6166 -18 1004 192 50 50 chr3 46187 46489 -227478089 + L1MB7 LINE L1 5883 6184 0 515 188 26 0 chr3 46489 46606 -227477972 - L1 LINE L1 -2749 3397 3278 * 586 203 15 0 chr3 46604 46737 -227477841 + L1 LINE L1 3415 3549 -2597 24962 52 2 2 chr3 46837 51865 -227472713 - L1P LINE L1 -988 5158 1 10171 229 27 13 chr3 51862 54947 -227469631 + L1P4 LINE L1 2358 5483 -682 * 12686 61 63 0 chr3 54949 57297 -227467281 + L1PA5 LINE L1 3752 6153 -1 1666 185 40 10 chr3 57635 57814 -227466764 - AluJo SINE Alu -5 307 114 186 43 0 0 chr3 57814 57837 -227466741 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 1666 185 40 10 chr3 57837 57954 -227466624 - AluJo SINE Alu -198 114 2 330 215 15 0 chr3 58486 58551 -227466027 - MER5A DNA MER1_type -123 66 1 2439 47 40 3 chr3 59122 59421 -227465157 - AluY SINE Alu -1 310 1 2308 120 10 0 chr3 59822 60131 -227464447 - AluSx SINE Alu 0 312 1 441 219 80 29 chr3 60799 60936 -227463642 + MIR3 SINE MIR 54 197 -11 394 208 157 38 chr3 60936 61095 -227463483 + MER5B DNA MER1_type 1 178 0 2281 179 30 49 chr3 61169 61677 -227462901 - MLT1D LTR MaLR -7 498 1 501 201 63 13 chr3 61947 62106 -227462472 + MER53 DNA DNA 1 167 -22 216 223 43 129 chr3 62284 62423 -227462155 - MIR SINE MIR -50 212 86 267 284 181 17 chr3 62982 63098 -227461480 - MIR3 SINE MIR -60 148 14 1968 142 10 3 chr3 63264 63560 -227461018 - AluSq SINE Alu -15 298 1 1795 185 116 44 chr3 64084 64517 -227460061 - MER31B LTR ERV1 0 466 3 692 288 27 51 chr3 64839 64942 -227459636 - MIR SINE MIR 0 262 158 2324 179 63 32 chr3 64942 65434 -227459144 - LTR22 LTR ERVK -2 507 1 692 288 27 51 chr3 65434 65587 -227458991 - MIR SINE MIR -104 158 12 376 290 36 29 chr3 65572 65710 -227458868 - MIR3 SINE MIR -43 165 27 * 489 310 17 29 chr3 65767 65941 -227458637 + MIR SINE MIR 41 212 -50 183 365 149 0 chr3 67028 67135 -227457443 - MIR SINE MIR -66 142 20 204 324 0 14 chr3 67616 67687 -227456891 - MIR3 SINE MIR -24 184 115 414 271 113 26 chr3 68021 68172 -227456406 - MIR3 SINE MIR -11 197 34 250 271 146 10 chr3 68189 68285 -227456293 - MIR SINE MIR -55 153 45 1708 196 0 20 chr3 68308 68609 -227455969 - AluJb SINE Alu -17 295 1 445 276 178 6 chr3 68610 68773 -227455805 - MIR SINE MIR -64 198 8 349 203 212 25 chr3 68894 69012 -227455566 - L1ME4a LINE L1 -14 6107 5968 539 222 9 0 chr3 69532 69640 -227454938 + MER81 DNA DNA 1 109 -5 7315 44 33 1 chr3 69671 71342 -227453236 + L1PA4 LINE L1 4458 6154 -1 328 279 103 22 chr3 71375 71511 -227453067 - MIR SINE MIR -113 149 3 537 320 90 21 chr3 71773 72107 -227452471 + L2 LINE L2 1229 1585 -1729 328 287 0 23 chr3 72096 72183 -227452395 + L2 LINE L2 3229 3313 0 * 188 319 21 0 chr3 72194 72241 -227452337 + MIR SINE MIR 93 140 -68 22 0 0 0 chr3 72599 72621 -227451957 + AT_rich Low_complexity Low_complexity 1 22 0 439 326 74 107 chr3 72921 73286 -227451292 + L2 LINE L2 2918 3270 -2 643 269 90 12 chr3 73291 73547 -227451031 + L2 LINE L2 2999 3274 -39 182 275 0 0 chr3 73623 73663 -227450915 + MIR SINE MIR 159 198 -64 1193 136 14 0 chr3 73742 73962 -227450616 - L1MA6 LINE L1 -1 6299 6077 2932 48 19 3 chr3 74025 74401 -227450177 - L1PA6 LINE L1 -3 6151 5770 33751 108 6 9 chr3 74407 80571 -227444007 - L1PA6 LINE L1 0 6154 17 23 33 0 0 chr3 81097 81127 -227443451 + AT_rich Low_complexity Low_complexity 1 30 0 611 223 19 38 chr3 82445 82656 -227441922 + L1MA9 LINE L1 6068 6274 -38 2306 107 3 0 chr3 82685 82985 -227441593 + AluSp SINE Alu 3 303 -10 3083 47 0 0 chr3 83179 83561 -227441017 - L1PA4 LINE L1 -3 6152 5771 2291 39 0 0 chr3 83561 83845 -227440733 + L1P2 LINE L1 5439 5722 -433 559 140 11 0 chr3 84123 84216 -227440362 - L1PB4 LINE L1 -1 6155 6062 10443 176 29 35 chr3 86376 86581 -227437997 - L1M2 LINE L1 -743 5585 5380 1967 144 3 0 chr3 86581 86866 -227437712 - AluSx SINE Alu -26 286 1 10443 176 29 35 chr3 86866 87928 -227436650 - L1M2 LINE L1 -948 5380 4313 2359 92 0 0 chr3 87928 88232 -227436346 + AluY SINE Alu 1 304 -7 10443 176 29 35 chr3 88232 89538 -227435040 - L1M2 LINE L1 -2015 4313 3091 13044 32 0 15 chr3 89538 91918 -227432660 - L1PA3 LINE L1 0 6155 3798 5124 52 1 0 chr3 91918 92614 -227431964 + L1PA3 LINE L1 3104 3800 -2346 2480 182 24 42 chr3 92611 93232 -227431346 - L1M2 LINE L1 -3227 3101 2492 * 965 147 86 6 chr3 93233 93396 -227431182 - AluSp SINE Alu 0 313 138 3784 228 36 28 chr3 93397 94838 -227429740 - L1M2 LINE L1 -3819 2509 1054 808 213 0 37 chr3 94838 95002 -227429576 + FRAM SINE Alu 1 150 -26 408 111 0 49 chr3 95011 95092 -227429486 - L1M2 LINE L1 -4276 1052 976 501 280 0 8 chr3 95093 95225 -227429353 - L1M2 LINE L1 -5020 308 178 1692 203 41 19 chr3 95471 95994 -227428584 + L1M2c LINE L1 2234 2762 -4734 1519 272 79 31 chr3 97770 98946 -227425632 + L1M2c LINE L1 2558 3658 -3907 780 223 18 6 chr3 98951 99117 -227425461 - L1PA16 LINE L1 -6 6160 5993 2779 113 57 7 chr3 99124 99501 -227425077 + MLT2A1 LTR ERVL 1 403 -41 396 0 0 0 chr3 99501 99545 -227425033 + (TG)n Simple_repeat Simple_repeat 2 45 0 2779 113 57 7 chr3 99545 99590 -227424988 + MLT2A1 LTR ERVL 403 444 0 38215 90 15 9 chr3 99590 104664 -227419914 + HERVL-A1 LTR ERVL 1 5104 -550 2377 107 28 0 chr3 104663 105017 -227419561 + HERVL-A1 LTR ERVL 5291 5654 0 * 1637 118 35 8 chr3 105017 105272 -227419306 + MLT2A1 LTR ERVL 1 262 -182 249 214 71 0 chr3 105278 105362 -227419216 + L1MC4 LINE L1 6614 6703 -1339 231 195 26 13 chr3 105365 105442 -227419136 + (TA)n Simple_repeat Simple_repeat 1 78 0 366 75 0 19 chr3 105453 105506 -227419072 + MLT2A2 LTR ERVL 402 453 0 959 186 0 0 chr3 105516 105683 -227418895 - L1PA16 LINE L1 -188 5978 5812 325 91 18 0 chr3 105701 105756 -227418822 - L1MA2 LINE L1 -3 6301 6246 * 14294 54 5 0 chr3 105750 108233 -227416345 - L1PA3 LINE L1 -1 6154 3660 1892 47 9 0 chr3 108238 108470 -227416108 + L1PA3 LINE L1 3452 3685 -2461 * 5154 231 20 10 chr3 108467 110292 -227414286 - L1M1 LINE L1 -5036 2529 9 * 8845 248 70 27 chr3 110268 111648 -227412930 - L1PB4 LINE L1 -307 7268 5948 2178 136 60 26 chr3 111648 112000 -227412578 - THE1B LTR MaLR 0 364 1 8845 248 70 27 chr3 112000 114232 -227410346 - L1PB4 LINE L1 -1627 5948 3153 731 175 7 73 chr3 114232 114369 -227410209 - FLAM_C SINE Alu -5 128 1 8845 248 70 27 chr3 114369 115510 -227409068 - L1PB4 LINE L1 -4422 3153 2062 280 289 89 0 chr3 115502 115592 -227408986 - L1PB4 LINE L1 -5280 1569 1472 * 294 367 8 8 chr3 116311 116439 -227408139 - L1PB4 LINE L1 -5271 1568 1441 284 369 64 37 chr3 116643 116971 -227407607 - L1PB4 LINE L1 -6355 495 159 3901 225 41 19 chr3 116987 118813 -227405765 + L1MA9 LINE L1 4244 6111 -201 3104 235 35 25 chr3 118835 118858 -227405720 + L1 LINE L1 4360 4381 -1765 1820 164 144 31 chr3 118858 119241 -227405337 + MSTA LTR MaLR 3 428 0 9309 168 10 31 chr3 119245 120855 -227403723 + MSTA-int LTR MaLR 3 1578 -2 2168 153 140 11 chr3 120857 121236 -227403342 + MSTA LTR MaLR 1 428 0 3104 235 35 25 chr3 121236 122086 -227402492 + L1 LINE L1 4383 5250 -896 10756 25 1 0 chr3 122086 124052 -227400526 + L1PA4 LINE L1 4179 6154 -1 14980 105 6 16 chr3 124056 126276 -227398302 + HERVH LTR ERV1 1796 3993 -3720 2580 104 11 20 chr3 126259 126664 -227397914 + HERVH LTR ERV1 3994 5273 -1818 * 28073 54 1 2 chr3 126662 130127 -227394451 + HERVH LTR ERV1 4252 7713 0 2790 67 2 15 chr3 130128 130626 -227393952 + LTR7 LTR ERV1 2 448 -2 4165 122 8 0 chr3 130628 131257 -227393321 - L1P3 LINE L1 -2302 4159 3526 192 77 0 0 chr3 131300 131326 -227393252 + (T)n Simple_repeat Simple_repeat 1 26 0 6799 26 1 1 chr3 131329 132109 -227392469 - L1PA3 LINE L1 -3 6152 5373 * 15866 136 41 22 chr3 132103 135564 -227389014 - L1P3 LINE L1 -2919 3542 5 591 200 20 33 chr3 135574 135724 -227388854 + L1MA9 LINE L1 5798 5945 -367 446 329 38 29 chr3 135732 136045 -227388533 + L1PA12 LINE L1 7 322 -7259 975 124 103 0 chr3 137115 137260 -227387318 + THE1B LTR MaLR 1 160 -204 5036 238 25 28 chr3 137802 138244 -227386334 + L1PA12 LINE L1 2319 2761 -4823 2053 89 119 0 chr3 138244 138513 -227386065 + AluY SINE Alu 1 301 0 5036 238 25 28 chr3 138513 139035 -227385543 + L1PA12 LINE L1 2761 3283 -4301 1286 46 0 0 chr3 139035 139187 -227385391 - L1PA4 LINE L1 -3 6152 6001 5036 238 25 28 chr3 139187 140161 -227384417 + L1PA12 LINE L1 3283 4269 -3315 * 7750 48 23 0 chr3 140156 141138 -227383440 - L1PA3 LINE L1 -2223 3923 2919 12543 36 1 0 chr3 141138 143328 -227381250 + L1PA3 LINE L1 3953 6147 -8 25386 46 2 0 chr3 143428 147245 -227377333 + L1PA3 LINE L1 2344 6152 -3 21 36 0 0 chr3 147245 147273 -227377305 + AT_rich Low_complexity Low_complexity 1 28 0 1224 188 25 4 chr3 147608 147847 -227376731 + AluJb SINE Alu 38 281 -31 724 235 92 86 chr3 147878 147973 -227376605 - L1MEc LINE L1 -2098 4031 3938 1666 183 27 10 chr3 147973 148274 -227376304 - AluJb SINE Alu -6 306 1 724 235 92 86 chr3 148274 148592 -227375986 - L1MEc LINE L1 -2191 3938 3612 1728 166 3 26 chr3 148592 148894 -227375684 + AluJb SINE Alu 1 295 -17 724 235 92 86 chr3 148894 148934 -227375644 - L1MEc LINE L1 -2517 3612 3574 962 178 5 64 chr3 149215 149391 -227375187 - AluJb SINE Alu -13 299 135 2263 106 0 10 chr3 149391 149703 -227374875 - AluSx SINE Alu -3 309 1 962 178 5 64 chr3 149703 149728 -227374850 - AluJb SINE Alu -177 135 110 459 0 0 0 chr3 149841 149892 -227374686 + (TTTC)n Simple_repeat Simple_repeat 2 52 0 1785 167 3 3 chr3 149894 150182 -227374396 - AluJb SINE Alu -16 296 9 532 276 97 15 chr3 150287 150627 -227373951 - L1MEc LINE L1 -3669 2460 2093 7516 36 0 0 chr3 150685 151618 -227372960 - L1PA3 LINE L1 -3 6152 5219 843 19 0 0 chr3 151619 151726 -227372852 + L1PA3 LINE L1 5122 5228 -918 207 0 0 0 chr3 151788 151811 -227372767 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 4996 40 5 2 chr3 151882 152517 -227372061 + L1PA3 LINE L1 5538 6174 0 443 273 51 68 chr3 152738 153090 -227371488 - L1MEc LINE L1 -4640 1670 1325 327 260 71 8 chr3 153186 153313 -227371265 - L1MEc LINE L1 -4969 1150 1016 210 71 0 0 chr3 153398 153426 -227371152 + (TA)n Simple_repeat Simple_repeat 1 28 0 468 366 6 6 chr3 154439 154622 -227369956 - MIR SINE MIR 0 262 80 187 284 74 49 chr3 154853 154934 -227369644 + L2 LINE L2 3023 3105 -167 460 301 136 25 chr3 155632 155868 -227368710 - MIR SINE MIR 0 262 1 362 319 145 46 chr3 156287 156591 -227367987 - L2 LINE L2 -781 2533 2200 365 330 100 77 chr3 156640 157603 -227366975 - L2 LINE L2 -14 3258 2280 523 258 48 27 chr3 157747 157933 -227366645 + MLT2D LTR ERVL 79 268 -146 1346 214 4 4 chr3 158045 158320 -227366258 - MLT1A1 LTR MaLR -90 275 1 2075 183 49 43 chr3 158320 158850 -227365728 + L1MB8 LINE L1 5302 5834 -344 416 215 58 5 chr3 158853 158896 -227365682 - L1M4 LINE L1 -2848 3298 3259 308 24 24 0 chr3 158896 158937 -227365641 + (TC)n Simple_repeat Simple_repeat 1 42 0 213 39 0 0 chr3 158936 158962 -227365616 + (CA)n Simple_repeat Simple_repeat 1 26 0 * 416 215 58 5 chr3 158937 159128 -227365450 - L1M4 LINE L1 -2887 3259 3028 * 2218 282 36 50 chr3 159122 159781 -227364797 - L1PB1 LINE L1 0 6151 5502 1074 217 55 3 chr3 159780 160089 -227364489 - L1M4 LINE L1 -1925 4221 3897 * 1226 261 96 0 chr3 160089 160442 -227364136 - L2 LINE L2 -782 2532 2146 227 222 0 0 chr3 161749 161794 -227362784 + (TTA)n Simple_repeat Simple_repeat 1 45 0 527 211 0 0 chr3 162518 162613 -227361965 + FLAM_C SINE Alu 35 129 -14 10219 175 6 20 chr3 162773 165636 -227358942 - L1PA13 LINE L1 -9 6154 3321 2902 39 0 11 chr3 165811 166173 -227358405 - L1PA4 LINE L1 -2 6153 5796 3181 168 16 4 chr3 166174 166738 -227357840 + L1PA4 LINE L1 5209 5774 -381 190 273 11 91 chr3 166837 166925 -227357653 + MER5A DNA MER1_type 51 131 -58 225 132 0 0 chr3 168102 168140 -227356438 + (T)n Simple_repeat Simple_repeat 1 38 0 930 275 108 41 chr3 168394 168607 -227355971 - MLT1J LTR MaLR -18 493 296 2021 129 46 38 chr3 168607 168979 -227355599 - THE1C LTR MaLR 0 375 1 930 275 108 41 chr3 168979 169227 -227355351 - MLT1J LTR MaLR -215 296 1 629 215 56 93 chr3 169226 169440 -227355138 - MER102a DNA MER1_type -1 329 124 * 330 211 180 70 chr3 169618 169746 -227354832 + MER5A DNA MER1_type 48 189 0 700 164 32 4 chr3 169749 169938 -227354640 - MER58B DNA MER1_type -1 340 73 19126 35 0 1 chr3 169938 172397 -227352181 - L1PA2 LINE L1 -2109 4037 1580 11567 27 0 0 chr3 172397 174531 -227350047 + L1PA2 LINE L1 4022 6155 0 301 247 13 13 chr3 174534 174611 -227349967 - MER58B DNA MER1_type -260 81 5 809 233 35 0 chr3 175301 175473 -227349105 - MER5B DNA MER1_type 0 178 1 457 282 0 0 chr3 175528 175631 -227348947 - MER5A DNA MER1_type -83 106 4 183 172 0 0 chr3 175641 175670 -227348908 - MER5A DNA MER1_type -75 114 86 7847 108 3 1 chr3 175810 176971 -227347607 - L1P LINE L1 -4976 1170 7 * 10617 34 1 9 chr3 176970 178343 -227346235 + L1P LINE L1 3891 5253 -893 1855 52 0 0 chr3 178343 178571 -227346007 + L1PA3 LINE L1 5926 6155 0 670 168 87 0 chr3 178589 178762 -227345816 - LTR49-int LTR ERV1 -684 5647 5460 1345 117 75 4 chr3 178763 179003 -227345575 - LTR56 LTR ERV1 -188 257 1 213 172 17 69 chr3 179075 179133 -227345445 + MIR SINE MIR 16 70 -138 486 280 98 13 chr3 179218 179427 -227345151 - MIR SINE MIR -1 261 36 6774 88 44 0 chr3 180043 181808 -227342770 + L1PA7 LINE L1 4349 6151 -3 289 243 14 0 chr3 182354 182428 -227342150 + MER116 DNA Mariner 6 80 0 399 294 80 25 chr3 182762 182925 -227341653 - L2 LINE L2 -191 3081 2910 1122 121 0 0 chr3 183046 183195 -227341383 - AluSq SINE Alu -106 207 59 449 291 171 9 chr3 183435 183645 -227340933 + MIR SINE MIR 7 250 -12 1089 262 54 87 chr3 183736 183818 -227340760 + L2 LINE L2 2464 2547 -767 9061 52 3 0 chr3 183818 185732 -227338846 - L1PA4 LINE L1 0 6155 4239 1089 262 54 87 chr3 185732 186111 -227338467 + L2 LINE L2 2547 2910 -404 379 192 0 39 chr3 186246 186324 -227338254 + L2 LINE L2 3207 3281 -32 2445 62 3 0 chr3 186634 186926 -227337652 + AluY SINE Alu 1 293 -18 252 233 50 67 chr3 187060 187244 -227337334 - L1ME LINE L1 -644 5518 5341 1590 298 44 47 chr3 187278 188445 -227336133 - L1ME LINE L1 -813 5333 4168 396 0 0 0 chr3 188445 188489 -227336089 + (TG)n Simple_repeat Simple_repeat 2 45 0 1590 298 44 47 chr3 188489 188677 -227335901 - L1ME LINE L1 -1978 4168 3981 1544 226 3 7 chr3 188679 188988 -227335590 + AluJo SINE Alu 1 308 -4 596 219 77 146 chr3 189014 189237 -227335341 + MLT1J LTR MaLR 1 171 -340 1967 184 56 10 chr3 189237 189650 -227334928 - MSTB1 LTR MaLR 0 432 1 596 219 77 146 chr3 189650 189934 -227334644 + MLT1J LTR MaLR 171 473 -38 1911 228 32 24 chr3 189962 190413 -227334165 - L1ME1 LINE L1 -5 6161 5701 2274 95 0 0 chr3 190413 190744 -227333834 + AluSx SINE Alu 1 331 0 1911 228 32 24 chr3 190744 190880 -227333698 - L1ME1 LINE L1 -465 5701 5568 1516 176 21 52 chr3 190997 191313 -227333265 + AluJb SINE Alu 1 307 0 327 177 203 0 chr3 192926 193005 -227331573 - L1ME1 LINE L1 -577 5589 5495 800 194 36 12 chr3 193023 193188 -227331390 - AluJb SINE Alu -7 305 137 615 203 16 13 chr3 193191 193389 -227331189 - L1ME1 LINE L1 -730 5436 5242 1208 167 83 78 chr3 193528 193900 -227330678 - MLT1B LTR MaLR -16 374 1 502 208 17 0 chr3 193914 194034 -227330544 - L1ME1 LINE L1 -1098 5048 4927 2727 139 14 59 chr3 194071 194360 -227330218 - L1PA15 LINE L1 -3 6162 5862 1444 170 111 45 chr3 194360 194648 -227329930 - AluSx SINE Alu -2 310 4 2727 139 14 59 chr3 194648 194937 -227329641 - L1PA15 LINE L1 -303 5862 5495 2047 134 0 10 chr3 194937 195235 -227329343 - AluSx SINE Alu -17 295 1 2727 139 14 59 chr3 195235 195389 -227329189 - L1PA15 LINE L1 -670 5495 5336 1555 282 27 29 chr3 195398 195620 -227328958 - L1ME1 LINE L1 -2342 3804 3583 1457 211 16 26 chr3 195620 195928 -227328650 - AluJb SINE Alu -3 309 5 1555 282 27 29 chr3 195928 196023 -227328555 - L1ME1 LINE L1 -2563 3583 3489 730 218 0 0 chr3 196023 196147 -227328431 - FLAM_C SINE Alu -6 127 4 1555 282 27 29 chr3 196147 196561 -227328017 - L1ME1 LINE L1 -2657 3489 3073 6266 101 3 14 chr3 196555 197887 -227326691 - L1PA8 LINE L1 -5 6167 4837 587 234 0 0 chr3 197917 198045 -227326533 - AluJo SINE Alu -178 134 7 1153 199 72 13 chr3 198061 198099 -227326479 - L1M4 LINE L1 -581 5597 5563 3508 22 0 2 chr3 198099 198546 -227326032 + L1PA4 LINE L1 5732 6177 0 1153 199 72 13 chr3 198546 198812 -227325766 - L1M4 LINE L1 -615 5563 5274 1557 230 0 7 chr3 198820 199124 -227325454 - AluJo SINE Alu -2 310 9 3285 89 6 2 chr3 199273 199756 -227324822 - L1P LINE L1 -4933 1213 729 * 25180 46 0 1 chr3 199755 203251 -227321327 + L1PA3 LINE L1 2079 5570 -585 2104 42 0 4 chr3 203351 203612 -227320966 + L1PA3 LINE L1 5895 6154 -1 10061 205 18 6 chr3 203612 206576 -227318002 + L1PA15 LINE L1 2815 5818 -347 419 218 0 10 chr3 206584 206685 -227317893 + L1P LINE L1 4066 4165 -1981 * 1198 223 12 80 chr3 206675 206795 -227317783 + L1MA9 LINE L1 5817 5944 -368 1697 171 29 6 chr3 206795 207089 -227317489 + L1PA15 LINE L1 5831 6152 -13 1198 223 12 80 chr3 207089 207457 -227317121 + L1MA9 LINE L1 5944 6272 -40 8271 194 44 46 chr3 207519 208623 -227315955 + L1MB1 LINE L1 2823 3929 -2239 1761 188 3 0 chr3 208623 208915 -227315663 + AluJb SINE Alu 7 299 -13 8271 194 44 46 chr3 208915 210785 -227313793 + L1MB1 LINE L1 3929 5799 -369 1400 203 30 36 chr3 210785 211086 -227313492 + AluJo SINE Alu 1 299 -3 8271 194 44 46 chr3 211086 211454 -227313124 + L1MB1 LINE L1 5799 6167 -1 1630 199 0 13 chr3 211730 212041 -227312537 - AluJb SINE Alu -3 309 3 1710 192 13 16 chr3 212047 212360 -227312218 - AluJo SINE Alu 0 312 1 237 132 0 0 chr3 212695 212733 -227311845 + (TG)n Simple_repeat Simple_repeat 1 38 0 * 291 54 0 0 chr3 212732 212769 -227311809 + (GA)n Simple_repeat Simple_repeat 1 37 0 360 236 73 16 chr3 213001 213124 -227311454 + MIR SINE MIR 105 234 -28 423 330 124 57 chr3 214536 214972 -227309606 - L2 LINE L2 0 3272 2808 1820 161 16 3 chr3 215010 215315 -227309263 - MER1B DNA MER1_type 0 339 31 410 303 103 44 chr3 215363 215769 -227308809 - L2 LINE L2 -666 2648 2219 1052 323 89 19 chr3 216099 216570 -227308008 + L3 LINE CR1 1051 1554 -23 246 95 0 0 chr3 216644 216686 -227307892 + (T)n Simple_repeat Simple_repeat 1 42 0 1523 195 41 21 chr3 217267 217556 -227307022 + MSTB2 LTR MaLR 1 299 -158 2916 137 5 2 chr3 217556 218003 -227306575 + MER83 LTR ERV1 1 448 0 1523 195 41 21 chr3 218003 218051 -227306527 + MSTB2 LTR MaLR 299 345 -112 241 339 106 22 chr3 219061 219241 -227305337 + MIR SINE MIR 64 258 -4 2283 101 6 20 chr3 219933 220279 -227304299 + L1PA13 LINE L1 5822 6162 -1 32 43 0 0 chr3 220347 220393 -227304185 + AT_rich Low_complexity Low_complexity 1 46 0 224 231 31 0 chr3 220460 220525 -227304053 + (CAA)n Simple_repeat Simple_repeat 2 68 0 236 100 25 0 chr3 220781 220821 -227303757 + (TG)n Simple_repeat Simple_repeat 2 42 0 2047 173 69 6 chr3 221020 221458 -227303120 + MER31A LTR ERV1 3 531 -12 243 0 0 0 chr3 221460 221487 -227303091 + (T)n Simple_repeat Simple_repeat 1 27 0 25 0 0 0 chr3 222328 222353 -227302225 + AT_rich Low_complexity Low_complexity 1 25 0 408 279 149 13 chr3 222363 222517 -227302061 - MIR SINE MIR -42 220 46 577 146 0 176 chr3 222706 222871 -227301707 + AluJb SINE Alu 85 220 -92 23 0 0 0 chr3 222900 222923 -227301655 + AT_rich Low_complexity Low_complexity 1 23 0 21 0 0 0 chr3 222952 222973 -227301605 + AT_rich Low_complexity Low_complexity 1 21 0 37682 67 22 1 chr3 223211 229221 -227295357 - L1PA5 LINE L1 -11 6143 3 541 177 31 0 chr3 229947 230043 -227294535 + FLAM_A SINE Alu 3 101 -41 2068 116 10 16 chr3 231830 232140 -227292438 - AluSq SINE Alu -5 308 1 2019 96 88 6 chr3 232142 232485 -227292093 - L1MA3 LINE L1 0 6305 5935 21219 171 28 23 chr3 232491 237680 -227286898 - L1PA10 LINE L1 -3 6480 1316 206 0 69 0 chr3 237680 237709 -227286869 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 21219 171 28 23 chr3 237709 237998 -227286580 - L1PA10 LINE L1 -5167 1316 1030 4059 149 18 73 chr3 237998 238829 -227285749 - LTR1 LTR ERV1 0 785 1 21219 171 28 23 chr3 238829 239729 -227284849 - L1PA10 LINE L1 -5453 1030 20 3995 125 0 2 chr3 239729 240369 -227284209 - L1MA3 LINE L1 -353 5952 5314 753 224 29 24 chr3 240914 241084 -227283494 + FRAM SINE Alu 1 164 -12 300 319 80 11 chr3 241452 241640 -227282938 + L2 LINE L2 2241 2441 -873 261 420 13 21 chr3 242047 242283 -227282295 - L2 LINE L2 -214 3058 2825 442 282 24 32 chr3 242451 242575 -227282003 - L2 LINE L2 -4 3268 3146 3307 207 32 10 chr3 242575 242822 -227281756 + L1MA7 LINE L1 5318 5558 -745 2022 215 99 72 chr3 242822 243626 -227280952 - LTR1B LTR ERV1 0 826 1 3307 207 32 10 chr3 243626 244275 -227280303 + L1MA7 LINE L1 5558 6293 -10 444 289 15 22 chr3 245209 245344 -227279234 + MIR3 SINE MIR 42 175 -33 1667 52 0 0 chr3 245766 245976 -227278602 - L1PA3 LINE L1 0 6155 5946 801 257 87 10 chr3 246131 246440 -227278138 - L1ME3A LINE L1 -315 5855 5523 13728 212 33 16 chr3 246776 247175 -227277403 + L1MA5 LINE L1 1747 2138 -5224 2001 155 0 0 chr3 247175 247466 -227277112 + AluSx SINE Alu 3 293 -19 13728 212 33 16 chr3 247466 248377 -227276201 + L1MA5 LINE L1 2138 3032 -4330 924 145 0 0 chr3 248377 248529 -227276049 + L1PA14 LINE L1 6009 6160 -1 13728 212 33 16 chr3 248529 252680 -227271898 + L1MA5 LINE L1 3032 7337 -25 22 88 0 0 chr3 252715 252772 -227271806 + AT_rich Low_complexity Low_complexity 1 57 0 1380 266 85 33 chr3 253690 254325 -227270253 - HAL1 LINE L1 0 2507 1840 * 1488 206 49 25 chr3 254320 254728 -227269850 - L1M4 LINE L1 -913 5233 4816 252 295 80 27 chr3 254863 254975 -227269603 + L2 LINE L2 3150 3267 -5 1650 184 14 102 chr3 255593 256093 -227268485 - L1M4 LINE L1 -1322 4824 4369 21 82 0 0 chr3 256148 256197 -227268381 + AT_rich Low_complexity Low_complexity 1 49 0 4433 245 73 15 chr3 256404 257239 -227267339 - L1M4 LINE L1 -1777 4369 3584 2256 54 7 0 chr3 257239 257567 -227267011 - AluY SINE Alu 0 332 3 4433 245 73 15 chr3 257567 258230 -227266348 - L1M4 LINE L1 -2562 3584 2783 989 270 42 46 chr3 258234 258760 -227265818 + L1ME3A LINE L1 4323 4846 -1300 521 178 51 0 chr3 258883 259001 -227265577 + L1MA8 LINE L1 6164 6287 -4 244 291 8 30 chr3 259030 259164 -227265414 + L1ME3A LINE L1 4963 5093 -1053 443 35 0 0 chr3 259175 259232 -227265346 - L1PA6 LINE L1 -5 6149 6093 228 222 0 0 chr3 260432 260504 -227264074 + T-rich Low_complexity Low_complexity 1 72 0 22827 189 14 28 chr3 260506 267048 -227257530 - L1PA10 LINE L1 0 6483 10 1365 294 48 53 chr3 267067 268148 -227256430 + L1ME3A LINE L1 5088 6162 -8 22 56 0 0 chr3 268303 268339 -227256239 + AT_rich Low_complexity Low_complexity 1 36 0 253 259 21 98 chr3 268377 268520 -227256058 + Charlie7 DNA MER1_type 463 594 -2018 2210 133 58 24 chr3 268573 268987 -227255591 - MSTA LTR MaLR 0 428 1 380 192 93 41 chr3 269118 269290 -227255288 + Charlie7 DNA MER1_type 2404 2584 -28 34 65 0 0 chr3 269398 269460 -227255118 + AT_rich Low_complexity Low_complexity 1 62 0 3493 159 53 9 chr3 269783 270476 -227254102 - L1MA8 LINE L1 -4 6287 5564 287 71 0 24 chr3 270476 270518 -227254060 - MLT2A1 LTR ERVL -2 451 411 304 193 50 25 chr3 270523 270684 -227253894 + (TTATA)n Simple_repeat Simple_repeat 4 168 0 2318 84 16 0 chr3 270684 270992 -227253586 - MLT2A1 LTR ERVL -131 313 1 41944 91 5 6 chr3 270992 276649 -227247929 - HERVL-A1 LTR ERVL 0 5654 1 2264 151 36 23 chr3 276649 277087 -227247491 - MLT2A1 LTR ERVL 0 444 1 2123 167 18 5 chr3 277090 277667 -227246911 - L1MA8 LINE L1 -725 5566 4981 21 36 0 0 chr3 277677 277705 -227246873 + AT_rich Low_complexity Low_complexity 1 28 0 12717 194 30 13 chr3 277705 280075 -227244503 - L1PB2 LINE L1 -7 6201 3740 2008 164 86 5 chr3 280075 280471 -227244107 - MSTA LTR MaLR 0 428 1 12717 194 30 13 chr3 280471 282144 -227242434 - L1PB2 LINE L1 -2468 3740 2096 1341 146 0 14 chr3 282149 282361 -227242217 + AluSq SINE Alu 89 297 -16 3071 175 40 3 chr3 282363 282970 -227241608 - L1PB2 LINE L1 -4157 2047 1419 2500 196 50 0 chr3 282980 283677 -227240901 - L1PB2 LINE L1 -4920 1284 551 453 364 12 0 chr3 283690 283852 -227240726 + MIR3 SINE MIR 45 208 0 1146 158 34 49 chr3 284628 284894 -227239684 + L1MA1 LINE L1 6037 6298 -4 189 295 21 32 chr3 285024 285119 -227239459 + L3b LINE CR1 1268 1361 -222 267 290 63 50 chr3 285468 285588 -227238990 + MIR3 SINE MIR 78 199 -9 453 171 0 0 chr3 286856 286932 -227237646 + L1P LINE L1 3525 3600 -2546 17190 170 32 14 chr3 286937 287406 -227237172 - L1M1 LINE L1 -4132 3433 2974 2147 128 0 0 chr3 287406 287704 -227236874 - AluSg SINE Alu -11 299 2 17190 170 32 14 chr3 287704 290451 -227234127 - L1M1 LINE L1 -4591 2974 37 562 387 6 0 chr3 290458 290773 -227233805 - L1MC4a LINE L1 -1979 5829 5513 1883 154 36 30 chr3 290818 291148 -227233430 + THE1B LTR MaLR 1 332 -32 1511 184 27 0 chr3 291306 291589 -227232989 + AluSx SINE Alu 15 304 0 591 196 108 6 chr3 291589 291755 -227232823 - L1MC2 LINE L1 -226 6118 5961 299 186 34 0 chr3 291774 291833 -227232745 - AluJ/FLAM SINE Alu -217 85 25 639 237 50 32 chr3 291850 292069 -227232509 - L1MC4 LINE L1 -13 8029 7807 14449 104 9 1 chr3 292305 294703 -227229875 - L1PA7 LINE L1 -3 6466 4088 336 64 0 0 chr3 294703 294750 -227229828 + (TTG)n Simple_repeat Simple_repeat 2 48 0 14449 104 9 1 chr3 294750 297059 -227227519 - L1PA7 LINE L1 -2381 4088 1671 24 32 0 0 chr3 297285 297316 -227227262 + AT_rich Low_complexity Low_complexity 1 31 0 457 318 24 16 chr3 297905 298157 -227226421 + L1ME LINE L1 4592 4845 -1301 364 272 127 13 chr3 298304 298462 -227226116 - L2 LINE L2 0 3313 3138 312 281 30 7 chr3 298521 298656 -227225922 + L1ME LINE L1 5691 5828 -334 435 327 42 0 chr3 298934 299099 -227225479 + MIR SINE MIR 20 191 -71 22 0 0 0 chr3 299139 299161 -227225417 + AT_rich Low_complexity Low_complexity 1 22 0 221 281 206 7 chr3 299161 299307 -227225271 + MIR SINE MIR 88 262 0 2089 123 7 3 chr3 300467 300760 -227223818 + AluSc SINE Alu 3 296 -13 2085 127 0 0 chr3 300767 301082 -227223496 + AluSx SINE Alu 1 315 0 1900 181 40 44 chr3 301164 301592 -227222986 + MSTB LTR MaLR 1 375 0 490 257 68 14 chr3 301842 301990 -227222588 + MIR3 SINE MIR 15 170 -38 251 73 0 0 chr3 301994 302035 -227222543 + L1PA6 LINE L1 6114 6154 0 208 286 189 51 chr3 302334 302509 -227222069 + L3 LINE CR1 1352 1550 -27 377 356 67 0 chr3 302994 303174 -227221404 + MIR SINE MIR 69 260 -2 208 139 0 0 chr3 303177 303213 -227221365 + (T)n Simple_repeat Simple_repeat 1 36 0 186 133 0 0 chr3 303233 303263 -227221315 + (TTTA)n Simple_repeat Simple_repeat 3 32 0 26396 76 5 2 chr3 303268 307805 -227216773 - L1PA6 LINE L1 -1 6153 1608 4878 168 10 29 chr3 307860 309254 -227215324 + L1P LINE L1 8 1536 -4610 348 142 44 0 chr3 309288 309364 -227215214 - L1MA4A LINE L1 -185 6820 6738 985 47 0 0 chr3 309382 309510 -227215068 + L1P LINE L1 2918 3045 -3101 * 7265 81 2 2 chr3 309503 310560 -227214018 - L1P LINE L1 -3219 2927 1871 6665 234 55 9 chr3 310556 314458 -227210120 - L1MA4A LINE L1 -256 6749 2635 * 2439 171 13 19 chr3 314458 314919 -227209659 - LTR22A LTR ERVK 0 458 1 11441 135 2 5 chr3 314920 316883 -227207695 - HERVK22 LTR ERVK -1 6836 3188 9943 122 4 1 chr3 316889 318385 -227206193 - HERVK22 LTR ERVK -3193 3644 2144 5777 118 22 14 chr3 318385 318733 -227205845 - HERVK22 LTR ERVK -5902 935 591 2697 26 0 0 chr3 318733 319040 -227205538 - AluYb8 SINE Alu -11 307 1 5777 118 22 14 chr3 319040 319617 -227204961 - HERVK22 LTR ERVK -6246 591 3 2439 167 31 22 chr3 319619 320069 -227204509 - LTR22A LTR ERVK 0 458 5 3504 196 36 13 chr3 320072 320925 -227203653 - L1MA4A LINE L1 -4209 2640 1768 23 33 0 0 chr3 321019 321049 -227203529 + AT_rich Low_complexity Low_complexity 1 30 0 25 31 0 0 chr3 321082 321114 -227203464 + AT_rich Low_complexity Low_complexity 1 32 0 21 57 0 0 chr3 321184 321219 -227203359 + AT_rich Low_complexity Low_complexity 1 35 0 285 229 84 0 chr3 321308 321391 -227203187 - MIR SINE MIR -109 153 64 180 0 0 0 chr3 321731 321751 -227202827 + (CA)n Simple_repeat Simple_repeat 2 21 0 205 260 123 68 chr3 322269 322415 -227202163 - MER5A DNA MER1_type -1 188 35 543 354 14 7 chr3 322927 323071 -227201507 - MER91A DNA MER1_type -1 195 51 197 340 128 0 chr3 323196 323290 -227201288 - L2 LINE L2 -9 3263 3158 10429 150 35 5 chr3 323499 325351 -227199227 + Tigger1 DNA MER2_type 2 1907 -511 259 203 0 31 chr3 325360 325424 -227199154 + (CATA)n Simple_repeat Simple_repeat 2 63 0 435 163 0 0 chr3 325426 325506 -227199072 + Tigger1 DNA MER2_type 1896 1975 -443 10575 218 28 35 chr3 325506 330453 -227194125 + L1PA15-16 LINE L1 8 4692 -2157 5871 132 1 5 chr3 330454 331425 -227193153 + L1P LINE L1 3560 4526 -1620 1699 132 3 0 chr3 331423 331710 -227192868 + L1P LINE L1 4869 5156 -990 * 15789 133 7 8 chr3 331720 333552 -227191026 - L1P LINE L1 -1119 5027 3200 1526 97 9 44 chr3 333552 333779 -227190799 - AluY SINE Alu -9 302 84 15789 133 7 8 chr3 333779 334683 -227189895 - L1P LINE L1 -2946 3200 2296 625 261 61 6 chr3 334676 334856 -227189722 + L1M1 LINE L1 161 350 -7215 * 11492 196 35 9 chr3 334965 337285 -227187293 + L1M1 LINE L1 298 2677 -4888 7514 31 1 3 chr3 337286 338655 -227185923 + L1PA4 LINE L1 4789 6155 0 2388 155 32 0 chr3 338657 339095 -227185483 + Tigger1 DNA MER2_type 1966 2417 -1 1551 257 89 67 chr3 339752 340518 -227184060 - L2 LINE L2 0 3313 2513 642 154 83 6 chr3 340528 340684 -227183894 + L1M4 LINE L1 5180 5347 -799 2709 190 6 2 chr3 340698 341204 -227183374 + L1PA10 LINE L1 1 508 -5367 2324 183 15 28 chr3 341204 341742 -227182836 + L1PA10 LINE L1 717 1274 -4734 26400 74 5 1 chr3 341800 347925 -227176653 + L1PA5 LINE L1 11 6154 0 203 0 37 0 chr3 347972 347999 -227176579 + (TAAAA)n Simple_repeat Simple_repeat 2 29 0 23919 151 14 9 chr3 348013 348289 -227176289 + L1PA10 LINE L1 1311 1584 -4899 840 104 16 0 chr3 348289 348414 -227176164 + L1PA5 LINE L1 6020 6146 -8 23919 151 14 9 chr3 348414 350820 -227173758 + L1PA10 LINE L1 1584 3978 -2505 462 18 0 0 chr3 350820 350875 -227173703 + (CA)n Simple_repeat Simple_repeat 2 56 0 23919 151 14 9 chr3 350875 353339 -227171239 + L1PA10 LINE L1 3978 6473 -10 322 26 105 0 chr3 353339 353415 -227171163 + (TA)n Simple_repeat Simple_repeat 2 85 0 2429 222 65 9 chr3 353418 354184 -227170394 + L1ME1 LINE L1 5330 6160 -6 2177 254 35 5 chr3 354201 354779 -227169799 - L2 LINE L2 -793 2521 1927 1941 96 4 46 chr3 355283 355563 -227169015 + AluSc SINE Alu 3 270 -39 278 65 0 22 chr3 355575 355621 -227168957 + (TAAA)n Simple_repeat Simple_repeat 3 47 0 1930 184 0 48 chr3 355621 355997 -227168581 + MLT1B LTR MaLR 33 390 0 563 257 14 35 chr3 356507 356651 -227167927 - MIR3 SINE MIR -52 156 16 445 329 74 25 chr3 356721 356964 -227167614 - MIR SINE MIR 0 262 8 2668 215 77 10 chr3 357052 357674 -227166904 + L1MDa LINE L1 31 694 -5846 1455 164 0 33 chr3 357680 357984 -227166594 + L1 LINE L1 4317 4610 -1536 463 248 94 0 chr3 357987 358104 -227166474 + FLAM_C SINE Alu 1 128 -15 191 272 130 53 chr3 358422 358591 -227165987 + L2 LINE L2 3130 3311 -2 6468 68 4 71 chr3 359000 360154 -227164424 + L1PA8 LINE L1 5083 6170 -2 2970 246 22 22 chr3 360168 361211 -227163367 - L1MB7 LINE L1 -16 6168 5127 5601 25 28 0 chr3 361211 361889 -227162689 - L1PA4 LINE L1 -2 6153 5457 2970 246 22 22 chr3 361889 362451 -227162127 - L1MB7 LINE L1 -1057 5127 4566 396 189 0 0 chr3 362451 362525 -227162053 - L1MD3 LINE L1 -190 7805 7732 * 801 248 38 17 chr3 362522 362952 -227161626 - L1MEc LINE L1 -4259 2137 1655 442 218 0 0 chr3 362961 363048 -227161530 + MER54B LTR ERVL 701 787 -6 361 324 85 0 chr3 463089 463265 -227061313 - L1ME4a LINE L1 -206 5915 5725 297 301 130 21 chr3 466532 466771 -227057807 - MLT1J LTR MaLR -19 492 228 201 161 18 71 chr3 467327 467383 -227057195 + L2 LINE L2 2507 2559 -755 1104 289 43 109 chr3 467833 469046 -227055532 - L2 LINE L2 -2 3311 2176 1081 182 14 5 chr3 469046 469260 -227055318 - MER58A DNA MER1_type 0 224 9 190 294 119 16 chr3 469271 469397 -227055181 - L2 LINE L2 -1135 2179 2041 366 307 26 9 chr3 469462 469576 -227055002 - MIR3 SINE MIR -6 202 87 339 300 44 128 chr3 469718 469905 -227054673 - L2 LINE L2 -3 3269 3111 1508 186 95 23 chr3 469905 470254 -227054324 + MLT1A2 LTR MaLR 1 374 0 339 300 44 128 chr3 470254 470339 -227054239 - L2 LINE L2 -161 3111 3020 721 292 4 30 chr3 470771 471007 -227053571 - MIR SINE MIR -10 252 23 674 329 44 17 chr3 471226 471570 -227053008 - L2 LINE L2 -766 2548 2196 23 33 0 0 chr3 471811 471841 -227052737 + AT_rich Low_complexity Low_complexity 1 30 0 267 31 0 0 chr3 472509 472541 -227052037 + (TTTC)n Simple_repeat Simple_repeat 2 33 0 2122 97 4 0 chr3 472547 472825 -227051753 - AluSg SINE Alu -31 279 1 233 326 0 0 chr3 473035 473127 -227051451 - MLT1H LTR MaLR -4 545 454 322 247 22 22 chr3 473265 473354 -227051224 - MLT1H LTR MaLR -325 224 136 2514 211 3 63 chr3 475388 475977 -227048601 + MLT2B3 LTR ERVL 1 554 0 798 264 111 97 chr3 476016 476708 -227047870 - MER21B LTR ERV1 -150 713 12 219 183 39 19 chr3 476730 476834 -227047744 + (TA)n Simple_repeat Simple_repeat 1 106 0 379 270 0 0 chr3 476894 476983 -227047595 - Tigger7 DNA MER2_type 0 2487 2399 315 119 15 30 chr3 477922 477989 -227046589 + Alu SINE Alu 235 300 0 1810 152 7 0 chr3 478074 478351 -227046227 - AluSx SINE Alu -33 279 1 429 318 68 36 chr3 478509 478729 -227045849 + MIR SINE MIR 22 248 -14 943 331 78 18 chr3 479765 480412 -227044166 - L2 LINE L2 -4 3309 2610 1363 210 57 20 chr3 480412 480764 -227043814 - MLT1A1 LTR MaLR 0 365 1 943 331 78 18 chr3 480764 480931 -227043647 - L2 LINE L2 -703 2610 2455 349 217 29 0 chr3 481127 481196 -227043382 - MER58 DNA MER1_type 0 2420 2350 242 348 34 0 chr3 482326 482444 -227042134 - MIR SINE MIR -2 260 139 683 288 23 0 chr3 482479 482656 -227041922 + MIR SINE MIR 56 236 -26 1350 176 146 5 chr3 483059 483428 -227041150 + MSTB1 LTR MaLR 8 428 -4 601 211 0 23 chr3 484561 484694 -227039884 + MER5A DNA MER1_type 1 130 -59 224 233 16 16 chr3 485183 485245 -227039333 + MIR SINE MIR 93 147 -61 784 248 70 33 chr3 485255 485497 -227039081 - MIR SINE MIR -10 252 2 1893 209 76 15 chr3 485679 486153 -227038425 - MLT1D LTR MaLR 0 505 3 825 200 0 0 chr3 487074 487214 -227037364 + FRAM SINE Alu 18 157 -19 370 357 7 29 chr3 487531 487671 -227036907 - L2 LINE L2 -2 3270 3134 273 293 113 0 chr3 487700 487806 -227036772 - MIR SINE MIR -2 260 143 426 267 14 34 chr3 489461 489607 -227034971 + Charlie8 DNA MER1_type 1 143 -2274 372 306 200 0 chr3 491440 491600 -227032978 + MIR3 SINE MIR 16 207 -1 679 254 20 5 chr3 492197 492398 -227032180 - MER3 DNA MER1_type 0 209 6 316 264 231 0 chr3 492548 492669 -227031909 - MIR SINE MIR -91 171 23 186 171 0 0 chr3 492742 492783 -227031795 + (CAT)n Simple_repeat Simple_repeat 2 42 0 256 287 35 61 chr3 493266 493381 -227031197 - L2 LINE L2 0 3272 3161 604 251 94 21 chr3 493435 493626 -227030952 + MER63A DNA MER1_type 1 205 -5 190 130 19 37 chr3 493628 493682 -227030896 + (TTATA)n Simple_repeat Simple_repeat 2 54 0 181 132 19 19 chr3 493708 493761 -227030817 + (TATAA)n Simple_repeat Simple_repeat 5 57 0 317 187 9 17 chr3 493811 494031 -227030547 + AluJo SINE Alu 16 295 -6 290 303 98 16 chr3 494136 494258 -227030320 + MIR SINE MIR 110 241 -21 329 380 25 13 chr3 494326 494484 -227030094 - L2 LINE L2 -177 3095 2936 617 343 58 29 chr3 496442 496818 -227027760 + L2 LINE L2 2841 3227 -86 1895 228 82 8 chr3 496875 497376 -227027202 + MLT1F LTR MaLR 3 540 -2 750 255 27 0 chr3 498871 499059 -227025519 - MER20 DNA MER1_type 0 219 27 2145 201 14 14 chr3 499149 499577 -227025001 - MSTA LTR MaLR 0 428 1 342 331 35 7 chr3 499603 499748 -227024830 - MIR3 SINE MIR -5 203 55 612 273 67 29 chr3 500132 500341 -227024237 + MIR SINE MIR 39 255 -7 23 54 0 0 chr3 501312 501349 -227023229 + AT_rich Low_complexity Low_complexity 1 37 0 217 256 133 44 chr3 501517 501607 -227022971 + MIR3 SINE MIR 3 100 -108 22 0 0 0 chr3 501930 501952 -227022626 + AT_rich Low_complexity Low_complexity 1 22 0 1092 182 47 14 chr3 502583 502941 -227021637 - MER61B LTR ERV1 -36 389 1 24 32 0 0 chr3 503084 503115 -227021463 + AT_rich Low_complexity Low_complexity 1 31 0 1521 168 29 59 chr3 503281 503656 -227020922 + MLT2D LTR ERVL 3 366 -48 388 104 13 13 chr3 503656 503704 -227020874 + (TC)n Simple_repeat Simple_repeat 1 51 -26 279 0 0 0 chr3 503704 503735 -227020843 + (TG)n Simple_repeat Simple_repeat 2 32 0 388 104 13 13 chr3 503735 503763 -227020815 + (TC)n Simple_repeat Simple_repeat 50 77 0 227 114 0 0 chr3 503769 503804 -227020774 + MLT2D LTR ERVL 430 464 0 1595 184 150 36 chr3 504017 504369 -227020209 - MLT1D LTR MaLR -8 497 82 4011 80 30 2 chr3 504369 504908 -227019670 + MER41A LTR ERV1 1 554 0 1595 184 150 36 chr3 504908 505001 -227019577 - MLT1D LTR MaLR -423 82 1 189 290 11 75 chr3 505224 505317 -227019261 - L2 LINE L2 -54 3259 3173 320 327 79 0 chr3 505327 505428 -227019150 - L2 LINE L2 -774 2540 2432 248 192 68 27 chr3 505544 505617 -227018961 + L1M3 LINE L1 5367 5442 -729 462 350 53 31 chr3 505714 506034 -227018544 + L1ME LINE L1 5477 5803 -318 768 345 75 18 chr3 506491 506891 -227017687 + L3 LINE CR1 904 1326 -251 354 301 44 65 chr3 507023 507408 -227017170 + MLT1J1 LTR MaLR 50 426 -20 351 335 197 0 chr3 507557 507775 -227016803 + L3 LINE CR1 1316 1576 -1 1061 314 133 13 chr3 508575 509325 -227015253 - L2 LINE L2 0 3313 2486 2550 291 95 34 chr3 509381 510035 -227014543 - L2 LINE L2 -2015 1299 686 2323 100 3 0 chr3 510035 510345 -227014233 + AluY SINE Alu 1 311 0 2550 291 95 34 chr3 510345 510883 -227013695 - L2 LINE L2 -2628 686 34 357 213 43 156 chr3 511484 511625 -227012953 - L2 LINE L2 -1 3312 3188 985 204 88 4 chr3 512005 512255 -227012323 - ORSL DNA AcHobo -3 272 2 186 189 0 0 chr3 514347 514384 -227010194 + (TCCA)n Simple_repeat Simple_repeat 1 37 0 311 285 74 104 chr3 514384 514710 -227009868 - L2 LINE L2 -2 3311 2996 232 237 66 26 chr3 515201 515277 -227009301 - MIR SINE MIR -16 246 168 517 205 192 26 chr3 515281 515432 -227009146 + MER5A DNA MER1_type 9 184 -5 355 354 9 0 chr3 515461 515574 -227009004 - MIR SINE MIR -116 146 33 1526 211 0 4 chr3 515600 515879 -227008699 - AluJb SINE Alu -29 283 6 1170 121 156 0 chr3 515943 516142 -227008436 - MER30 DNA MER1_type 0 230 1 1597 154 130 17 chr3 516625 516970 -227007608 + MLT1B LTR MaLR 5 388 -2 276 100 0 0 chr3 517125 517165 -227007413 + (TG)n Simple_repeat Simple_repeat 2 41 0 1526 214 128 49 chr3 518478 518604 -227005974 - L1MCb LINE L1 -4851 1194 1079 1969 144 0 10 chr3 518604 518759 -227005819 - AluSx SINE Alu -24 288 136 2095 119 20 3 chr3 518759 519054 -227005524 - AluSx SINE Alu -12 300 1 1969 144 0 10 chr3 519054 519189 -227005389 - AluSx SINE Alu -176 136 1 1526 214 128 49 chr3 519189 519846 -227004732 - L1MCb LINE L1 -4966 1079 619 198 91 0 0 chr3 519846 519879 -227004699 + (TTTG)n Simple_repeat Simple_repeat 2 34 0 307 240 58 19 chr3 519884 519988 -227004590 - LTR19C LTR ERV1 0 779 672 915 93 0 0 chr3 519988 520106 -227004472 + AluSg1 SINE Alu 1 118 -191 1860 206 47 67 chr3 520136 520670 -227003908 - LTR9 LTR ERV1 -89 523 1 312 146 0 0 chr3 520670 520718 -227003860 - Alu SINE Alu -20 282 235 1034 296 25 46 chr3 520903 521160 -227003418 - L1MCb LINE L1 -5475 570 324 2130 52 0 0 chr3 521160 521429 -227003149 + AluY SINE Alu 37 305 -6 1034 296 25 46 chr3 521429 521610 -227002968 - L1MCb LINE L1 -5721 324 141 273 228 63 47 chr3 521610 521737 -227002841 - L1MCb LINE L1 -6296 268 140 658 243 17 65 chr3 522089 522443 -227002135 + MER34B LTR ERV1 4 381 -184 1355 173 9 0 chr3 522448 522673 -227001905 - AluJo SINE Alu -2 310 84 356 238 85 43 chr3 522688 522816 -227001762 + MER34B LTR ERV1 395 533 -32 1387 222 73 9 chr3 522816 523159 -227001419 - MLT1A1 LTR MaLR 0 365 1 356 238 85 43 chr3 523159 523194 -227001384 + MER34B LTR ERV1 533 565 0 192 276 92 72 chr3 523320 523472 -227001106 - MIR SINE MIR -77 185 31 1712 215 66 17 chr3 523595 524065 -227000513 - MLT1D LTR MaLR -8 497 5 321 47 0 0 chr3 524068 524111 -227000467 + (GA)n Simple_repeat Simple_repeat 2 44 0 340 171 14 0 chr3 524599 524669 -226999909 - MER116 DNA Mariner -9 71 1 236 302 23 0 chr3 525538 525624 -226998954 + (TATG)n Simple_repeat Simple_repeat 1 88 0 * 293 294 5 53 chr3 525561 525748 -226998830 + (TG)n Simple_repeat Simple_repeat 2 179 0 375 307 12 18 chr3 525797 525960 -226998618 + (TG)n Simple_repeat Simple_repeat 1 162 0 333 174 0 0 chr3 525996 526065 -226998513 + (TG)n Simple_repeat Simple_repeat 1 69 0 21 36 0 0 chr3 527110 527138 -226997440 + AT_rich Low_complexity Low_complexity 1 28 0 2572 108 3 18 chr3 530114 530495 -226994083 + THE1C LTR MaLR 1 375 0 759 284 102 0 chr3 531222 531458 -226993120 + MIR SINE MIR 3 262 0 230 421 86 17 chr3 531461 531694 -226992884 - L2 LINE L2 -15 3257 3009 757 136 116 61 chr3 531714 531912 -226992666 - L1MA6 LINE L1 -271 6029 5821 389 222 30 30 chr3 532124 532259 -226992319 + MER69 DNA AcHobo 2380 2514 -12 2478 56 3 0 chr3 532686 532989 -226991589 - AluY SINE Alu -7 304 1 4514 72 7 0 chr3 533017 533603 -226990975 + LTR10C LTR ERV1 1 590 -1 25 65 0 0 chr3 533840 533886 -226990692 + AT_rich Low_complexity Low_complexity 1 46 0 24 0 0 0 chr3 534636 534660 -226989918 + AT_rich Low_complexity Low_complexity 1 24 0 34 84 0 0 chr3 534880 534963 -226989615 + AT_rich Low_complexity Low_complexity 1 83 0 2602 175 58 0 chr3 535877 536363 -226988215 + Tigger7 DNA MER2_type 1 514 -1973 541 140 0 56 chr3 536352 536459 -226988119 + Tigger7 DNA MER2_type 2391 2491 0 * 435 197 205 0 chr3 536540 536657 -226987921 + MIR SINE MIR 49 189 -73 229 256 68 105 chr3 536741 536874 -226987704 + MIR SINE MIR 103 230 -32 21 36 0 0 chr3 537061 537089 -226987489 + AT_rich Low_complexity Low_complexity 1 28 0 459 256 56 0 chr3 538232 538392 -226986186 + (CATATA)n Simple_repeat Simple_repeat 4 172 0 805 216 125 4 chr3 539082 539314 -226985264 - MIR SINE MIR -1 261 2 285 270 11 11 chr3 539456 539545 -226985033 + MIR SINE MIR 76 164 -98 1923 195 158 27 chr3 539545 540239 -226984339 + LTR48 LTR ERV1 1 707 0 423 274 0 0 chr3 540239 540341 -226984237 + MIR SINE MIR 161 262 0 331 297 86 38 chr3 540658 540971 -226983607 + L1ME4a LINE L1 5726 6053 -68 1530 158 75 0 chr3 541641 541919 -226982659 + MSTB1 LTR MaLR 134 432 0 358 312 85 0 chr3 541922 542063 -226982515 + MIR SINE MIR 108 260 -2 1385 233 34 79 chr3 542068 542597 -226981981 + MLT1D LTR MaLR 1 505 0 1671 163 3 14 chr3 542599 542906 -226981672 - AluJb SINE Alu 0 306 3 3386 222 11 50 chr3 542923 543815 -226980763 + MLT1D-int LTR MaLR 27 883 -488 1146 202 125 35 chr3 543902 544189 -226980389 + MLT1D-int LTR MaLR 880 1192 -179 1161 238 18 28 chr3 544279 544565 -226980013 + MLT1C LTR MaLR 185 467 0 261 368 30 30 chr3 545880 546013 -226978565 - MIR3 SINE MIR -70 138 6 303 299 64 45 chr3 546986 547067 -226977511 - L2 LINE L2 -7 3265 3187 2344 141 8 0 chr3 547067 547428 -226977150 + THE1B LTR MaLR 1 364 0 303 299 64 45 chr3 547428 547503 -226977075 - L2 LINE L2 -85 3187 3106 287 365 42 18 chr3 547547 547714 -226976864 - MIR SINE MIR -72 190 20 283 224 35 0 chr3 548295 548353 -226976225 + MER91C DNA MER1_type 64 123 -17 219 324 95 0 chr3 548438 548512 -226976066 + MIR3 SINE MIR 82 162 -46 750 161 0 60 chr3 548650 548799 -226975779 - FLAM_C SINE Alu -3 140 1 600 79 20 10 chr3 549359 549460 -226975118 + (GAA)n Simple_repeat Simple_repeat 1 102 0 889 211 0 0 chr3 549461 549627 -226974951 + FRAM SINE Alu 1 158 -18 283 338 63 24 chr3 549719 549926 -226974652 + MIR SINE MIR 20 234 -28 449 296 31 25 chr3 550503 550662 -226973916 + MIR SINE MIR 48 207 -55 1848 140 11 11 chr3 550677 550962 -226973616 - AluJb SINE Alu -27 285 1 21 57 0 0 chr3 551125 551160 -226973418 + AT_rich Low_complexity Low_complexity 1 35 0 293 256 144 38 chr3 552054 552214 -226972364 + MIR SINE MIR 60 236 -26 282 301 40 45 chr3 552294 552493 -226972085 - L1ME4a LINE L1 -192 5929 5732 189 271 235 0 chr3 552660 552745 -226971833 + MIR3 SINE MIR 100 204 -4 338 321 24 97 chr3 553038 553577 -226971001 + L2 LINE L2 2813 3312 -1 371 98 0 0 chr3 554252 554303 -226970275 + MADE1 DNA Mariner 1 51 -29 230 157 59 0 chr3 555409 555460 -226969118 - L1P LINE L1 -5516 630 577 822 147 0 0 chr3 555880 556009 -226968569 - FLAM_C SINE Alu -3 130 2 2972 131 9 6 chr3 556282 556748 -226967830 - MER41B LTR ERV1 0 635 169 1067 114 12 0 chr3 556850 557016 -226967562 - MER41B LTR ERV1 -467 168 1 240 283 87 0 chr3 557160 557252 -226967326 + MIR SINE MIR 71 170 -92 1800 161 0 3 chr3 558082 558368 -226966210 + MER49 LTR ERV1 1 285 -638 1159 236 56 25 chr3 558443 558727 -226965851 + MER4D LTR ERV1 555 847 -56 1570 149 11 48 chr3 558739 559079 -226965499 - MER61C LTR ERV1 -6 428 1 365 261 43 58 chr3 559553 559691 -226964887 - MLT1L LTR MaLR -42 573 438 192 234 16 121 chr3 560938 561062 -226963516 - MIR SINE MIR -11 251 141 5842 223 92 16 chr3 561242 563170 -226961408 - L1MDa LINE L1 -4277 2263 14 193 260 26 65 chr3 563171 563248 -226961330 - MER5A DNA MER1_type -114 75 2 * 261 261 22 97 chr3 563248 563378 -226961200 - MIR SINE MIR -69 139 20 204 327 45 36 chr3 564246 564356 -226960222 - L2 LINE L2 -6 3266 3156 261 349 0 0 chr3 564507 564590 -226959988 - L2 LINE L2 0 3272 3190 1972 114 14 21 chr3 565308 565598 -226958980 - AluSc SINE Alu -21 288 1 968 263 26 4 chr3 565804 566032 -226958546 + MIR SINE MIR 20 252 -10 232 289 12 60 chr3 566244 566327 -226958251 - MIR SINE MIR -109 99 21 233 355 13 0 chr3 566473 566549 -226958029 - L2 LINE L2 -14 3258 3182 22 0 0 0 chr3 566564 566586 -226957992 + AT_rich Low_complexity Low_complexity 1 22 0 1968 140 4 0 chr3 568948 569226 -226955352 + AluSx SINE Alu 1 279 -33 1467 224 7 0 chr3 569326 569607 -226954971 - Tigger7 DNA MER2_type -450 283 1 534 308 50 61 chr3 569761 570157 -226954421 - MER68 LTR ERV1 -20 542 151 471 366 98 17 chr3 570702 571050 -226953528 + L2 LINE L2 2804 3201 -112 261 0 0 0 chr3 571050 571079 -226953499 + (TTTA)n Simple_repeat Simple_repeat 2 30 0 471 366 98 17 chr3 571079 571202 -226953376 + L2 LINE L2 3201 3313 0 201 381 48 24 chr3 571342 571510 -226953068 + MER5A DNA MER1_type 3 174 -15 1939 178 61 16 chr3 571618 572044 -226952534 - MER65A LTR ERV1 0 445 1 206 298 48 96 chr3 572131 572251 -226952327 + MIR SINE MIR 57 166 -96 5902 103 12 0 chr3 572251 573158 -226951420 - L1PA13 LINE L1 -3 6160 5230 206 298 48 96 chr3 573158 573225 -226951353 + MIR SINE MIR 166 235 -27 288 296 71 10 chr3 573587 573685 -226950893 + L2 LINE L2 3210 3313 0 233 329 0 47 chr3 573927 574012 -226950566 - L2 LINE L2 -42 3271 3191 1922 239 123 3 chr3 575386 575977 -226948601 - L1MC4 LINE L1 -143 7899 7238 2089 241 76 3 chr3 575986 576562 -226948016 - L1MC4 LINE L1 -966 7076 6459 207 204 0 41 chr3 576880 576929 -226947649 + GA-rich Low_complexity Low_complexity 5 51 0 25 0 0 0 chr3 577753 577778 -226946800 + AT_rich Low_complexity Low_complexity 1 25 0 1778 123 40 7 chr3 578215 578525 -226946053 - AluSx SINE Alu 0 319 1 254 273 225 23 chr3 579557 579667 -226944911 + MIR SINE MIR 36 171 -37 418 303 82 26 chr3 579757 579952 -226944626 + MIR SINE MIR 55 260 -2 29 0 0 0 chr3 580502 580531 -226944047 + AT_rich Low_complexity Low_complexity 1 29 0 566 289 142 0 chr3 580691 580888 -226943690 - MIR SINE MIR -8 254 30 580 292 53 19 chr3 582328 582537 -226942041 - MIR SINE MIR -1 261 46 201 347 31 10 chr3 583063 583161 -226941417 - L3 LINE CR1 -144 1433 1334 1918 233 93 14 chr3 583165 583650 -226940928 + MLT1E LTR MaLR 67 589 -4 227 129 0 0 chr3 583753 583784 -226940794 - L2 LINE L2 -20 3293 3263 4981 94 6 1 chr3 583827 584528 -226940050 - L1PA10 LINE L1 -12 6156 5453 346 314 96 13 chr3 584534 584690 -226939888 - MIR SINE MIR -48 214 46 679 258 0 12 chr3 584771 584934 -226939644 + AluJb SINE Alu 129 289 -23 627 235 37 31 chr3 585171 585333 -226939245 - AluJb SINE Alu -1 311 149 250 285 0 0 chr3 585358 585435 -226939143 - FRAM/FAM SINE Alu -94 81 14 234 206 0 0 chr3 586632 586695 -226937883 + (TCTA)n Simple_repeat Simple_repeat 3 65 0 225 0 0 0 chr3 587156 587181 -226937397 + (CA)n Simple_repeat Simple_repeat 2 26 0 184 370 19 37 chr3 589236 589344 -226935234 + MIR SINE MIR 34 139 -123 21 57 0 0 chr3 589313 589348 -226935230 + AT_rich Low_complexity Low_complexity 1 35 0 * 22 0 0 0 chr3 589911 589933 -226934645 + AT_rich Low_complexity Low_complexity 1 22 0 2275 120 3 0 chr3 590245 590554 -226934024 - AluSx SINE Alu -2 310 1 533 261 72 26 chr3 592250 592556 -226932022 - L1ME4a LINE L1 -111 6010 5691 327 191 0 0 chr3 592853 592921 -226931657 + (TATG)n Simple_repeat Simple_repeat 2 69 0 189 200 67 50 chr3 593459 593519 -226931059 + L2 LINE L2 3252 3312 -1 213 39 0 0 chr3 593663 593689 -226930889 + (TTA)n Simple_repeat Simple_repeat 2 27 0 1234 0 7 0 chr3 593693 593832 -226930746 - L1PA2 LINE L1 -13 6142 6003 602 198 39 82 chr3 593977 594159 -226930419 + MIR SINE MIR 78 251 -11 322 156 104 0 chr3 594873 594950 -226929628 - MIR SINE MIR -114 148 64 207 183 100 17 chr3 594952 595012 -226929566 - L2 LINE L2 0 3272 3208 221 333 48 67 chr3 595546 595711 -226928867 - MIR3 SINE MIR -9 199 38 1855 135 63 44 chr3 595760 596124 -226928454 + THE1C LTR MaLR 1 371 -4 304 393 61 9 chr3 596248 596477 -226928101 + MIR SINE MIR 14 254 -8 2190 107 9 25 chr3 597319 597637 -226926941 + AluSq SINE Alu 1 313 0 301 338 79 12 chr3 597890 598111 -226926467 - MIR SINE MIR -20 242 6 35 0 0 0 chr3 598262 598297 -226926281 + AT_rich Low_complexity Low_complexity 1 35 0 6036 140 14 5 chr3 598297 599682 -226924896 - L1PB1 LINE L1 -8 6143 4745 195 129 0 0 chr3 600854 600885 -226923693 + (TATATG)n Simple_repeat Simple_repeat 2 32 0 2305 71 0 0 chr3 600993 601309 -226923269 + AluY SINE Alu 1 316 0 204 97 0 0 chr3 601346 601377 -226923201 + (CA)n Simple_repeat Simple_repeat 2 32 0 195 360 67 20 chr3 603981 604131 -226920447 + MIR SINE MIR 79 235 -27 783 172 30 24 chr3 607137 607306 -226917272 - L1MA10 LINE L1 -2 6332 6163 1110 248 22 101 chr3 608553 608653 -226915925 - MER34 LTR ERV1 -4 538 432 1751 159 11 0 chr3 608653 608923 -226915655 - AluJo SINE Alu -19 293 21 1110 248 22 101 chr3 608923 609406 -226915172 - MER34 LTR ERV1 -110 432 1 369 309 119 66 chr3 609581 609824 -226914754 - L2 LINE L2 -3 3269 3014 298 364 43 7 chr3 609991 610131 -226914447 + MIR SINE MIR 22 166 -96 524 248 16 23 chr3 610178 610307 -226914271 + MIR3 SINE MIR 74 201 -7 360 0 0 0 chr3 611041 611081 -226913497 + (TA)n Simple_repeat Simple_repeat 2 41 0 392 297 77 32 chr3 611666 611821 -226912757 + MIR SINE MIR 12 173 -89 371 284 76 56 chr3 612291 612488 -226912090 + L2 LINE L2 3113 3313 0 231 286 254 8 chr3 612584 612710 -226911868 - MIR SINE MIR -10 252 96 636 255 99 28 chr3 612720 612932 -226911646 + LTR16A LTR ERVL 16 242 -208 188 258 61 15 chr3 613187 613253 -226911325 - L2 LINE L2 -456 2858 2790 1160 196 57 75 chr3 613254 613626 -226910952 - MLT1A1 LTR MaLR 0 365 1 826 230 52 28 chr3 615142 615355 -226909223 + MER20 DNA MER1_type 2 219 0 211 363 39 0 chr3 615412 615514 -226909064 + L2 LINE L2 3167 3272 0 376 283 155 50 chr3 615807 616022 -226908556 - MER113 DNA MER1_type? 0 521 330 2223 113 7 0 chr3 616022 616331 -226908247 - AluSx SINE Alu -1 311 1 376 283 155 50 chr3 616331 616553 -226908025 - MER113 DNA MER1_type? -191 330 38 946 329 36 17 chr3 617122 617533 -226907045 - L3 LINE CR1 -213 1364 946 1607 178 52 0 chr3 617614 617900 -226906678 - AluJb SINE Alu -11 301 1 422 177 0 10 chr3 617922 618018 -226906560 + (TG)n Simple_repeat Simple_repeat 1 95 0 358 255 167 36 chr3 618219 618411 -226906167 + L2 LINE L2 3028 3244 -69 282 353 83 0 chr3 618462 618595 -226905983 + MER5A DNA MER1_type 46 189 0 1989 135 4 0 chr3 618663 618964 -226905614 + AluSx SINE Alu 1 302 0 229 216 14 14 chr3 619986 620060 -226904518 + GA-rich Low_complexity Low_complexity 2 75 0 243 364 54 27 chr3 620145 620329 -226904249 + MIR3 SINE MIR 19 207 -1 414 330 40 30 chr3 621263 621563 -226903015 - MER102b DNA MER1_type 0 341 39 182 255 0 43 chr3 623741 623788 -226900790 - L2 LINE L2 -11 3261 3217 660 294 89 5 chr3 623827 624041 -226900537 + MIR SINE MIR 14 245 -17 1920 146 0 4 chr3 626931 627212 -226897366 + AluSx SINE Alu 1 280 -32 362 21 21 0 chr3 627212 627259 -226897319 + (TAAAA)n Simple_repeat Simple_repeat 1 48 0 1920 144 3 3 chr3 628221 628505 -226896073 - AluSq SINE Alu -29 284 1 735 237 163 62 chr3 629269 629772 -226894806 - MLT1H1 LTR MaLR 0 555 2 263 288 25 0 chr3 629874 629965 -226894613 + MIR SINE MIR 84 147 -61 1066 124 0 0 chr3 629980 630125 -226894453 + FRAM SINE Alu 9 153 -23 505 304 196 22 chr3 631477 631839 -226892739 - L2 LINE L2 -2 3311 2887 333 325 88 53 chr3 632499 632782 -226891796 + L2 LINE L2 2623 2915 -399 280 297 68 27 chr3 633764 633912 -226890666 - MIR SINE MIR -73 189 36 21 0 0 0 chr3 634520 634541 -226890037 + AT_rich Low_complexity Low_complexity 1 21 0 222 250 33 0 chr3 634578 634638 -226889940 - MIR SINE MIR -27 235 174 33 56 0 0 chr3 634750 634804 -226889774 + AT_rich Low_complexity Low_complexity 1 54 0 186 267 0 67 chr3 634853 634898 -226889680 + L2 LINE L2 3164 3205 -67 2336 94 0 0 chr3 635287 635596 -226888982 + AluY SINE Alu 1 309 -2 803 243 66 22 chr3 635596 635822 -226888756 + MIR SINE MIR 22 257 -5 189 0 0 0 chr3 637952 637973 -226886605 + (TTTTC)n Simple_repeat Simple_repeat 5 25 0 400 77 31 0 chr3 639558 639623 -226884955 + (CA)n Simple_repeat Simple_repeat 2 68 0 703 270 47 9 chr3 639673 639884 -226884694 + MER20 DNA MER1_type 1 219 0 286 170 0 0 chr3 640168 640221 -226884357 - L1M4 LINE L1 -3779 2367 2315 2361 110 0 0 chr3 640239 640539 -226884039 - AluSx SINE Alu -12 300 1 280 322 34 34 chr3 640922 641071 -226883507 + L2 LINE L2 3164 3312 -1 1961 135 7 0 chr3 641125 641413 -226883165 - AluSx SINE Alu -22 290 1 2168 174 40 124 chr3 641496 641513 -226883065 + LTR8A LTR ERV1 34 51 -676 2022 183 53 12 chr3 641513 641924 -226882654 - MSTA LTR MaLR 0 428 1 2168 174 40 124 chr3 641924 642664 -226881914 + LTR8A LTR ERV1 51 727 0 208 250 29 15 chr3 642739 642807 -226881771 - MIR SINE MIR -64 198 130 792 233 26 48 chr3 643106 643376 -226881202 + MLT1D LTR MaLR 13 276 -229 258 284 69 9 chr3 643389 643505 -226881073 + MER34 LTR ERV1 11 133 -409 1001 227 108 31 chr3 643507 643945 -226880633 + LTR29 LTR ERV1 160 595 0 826 206 110 10 chr3 643945 644154 -226880424 + MLT1D LTR MaLR 276 505 0 2401 128 25 32 chr3 644952 645383 -226879195 - MER4E LTR ERV1 -8 771 344 344 344 50 17 chr3 645384 645564 -226879014 - L1ME LINE L1 -505 5616 5431 958 154 11 69 chr3 645569 645654 -226878924 - FAM SINE Alu -156 165 94 1111 94 5 80 chr3 645654 645855 -226878723 - MER30B DNA MER1_type -4 186 1 958 154 11 69 chr3 645855 645944 -226878634 - FAM SINE Alu -227 94 1 900 235 145 9 chr3 645970 646302 -226878276 - L1ME1 LINE L1 -8 6158 5782 248 246 40 48 chr3 646311 646406 -226878172 - L1M3 LINE L1 -729 5442 5347 4670 97 17 38 chr3 646406 647093 -226877485 - L1PA13 LINE L1 0 6163 5492 2266 71 7 23 chr3 647093 647401 -226877177 - AluY SINE Alu -8 303 1 4670 97 17 38 chr3 647401 647474 -226877104 - L1PA13 LINE L1 -671 5492 5419 248 246 40 48 chr3 647474 647504 -226877074 - L1M3 LINE L1 -824 5347 5318 350 303 212 32 chr3 648445 648947 -226875631 + L2 LINE L2 2703 3313 0 2878 153 70 23 chr3 650588 651203 -226873375 - L1MA6 LINE L1 -5 6295 5652 243 0 0 0 chr3 651282 651309 -226873269 + (TG)n Simple_repeat Simple_repeat 1 27 0 689 299 51 0 chr3 653040 653394 -226871184 - MER113 DNA MER1_type? -119 402 31 877 248 40 43 chr3 655691 656038 -226868540 + MLT1H1 LTR MaLR 208 553 -2 1524 84 14 0 chr3 656488 656701 -226867877 + L1PA5 LINE L1 5939 6154 0 27 0 0 0 chr3 656818 656845 -226867733 + AT_rich Low_complexity Low_complexity 1 27 0 296 252 19 37 chr3 658047 658154 -226866424 - MIR SINE MIR -46 216 112 1086 137 29 78 chr3 659580 659784 -226864794 - AluJo SINE Alu -83 229 36 2218 94 14 0 chr3 659794 660080 -226864498 - AluSx SINE Alu -21 291 2 349 270 67 79 chr3 660267 660443 -226864135 + MIR SINE MIR 12 185 -77 255 173 0 0 chr3 660587 660639 -226863939 + (CA)n Simple_repeat Simple_repeat 1 52 0 1755 184 0 34 chr3 660853 661174 -226863404 + AluJo SINE Alu 1 310 -2 195 294 73 46 chr3 661299 661408 -226863170 + MIR SINE MIR 95 206 -56 290 270 22 11 chr3 662390 662479 -226862099 + LTR33 LTR ERVL 27 116 -405 547 281 119 0 chr3 662535 662770 -226861808 + LTR33 LTR ERVL 222 484 -37 358 275 70 0 chr3 662891 663033 -226861545 - Charlie8 DNA MER1_type -2217 200 49 194 266 13 76 chr3 663307 663386 -226861192 + MIR SINE MIR 77 150 -112 442 257 88 70 chr3 663636 663807 -226860771 - MER5B DNA MER1_type -3 175 2 441 297 24 53 chr3 664035 664244 -226860334 - MIR SINE MIR -48 214 12 270 116 0 0 chr3 664734 664777 -226859801 + (CA)n Simple_repeat Simple_repeat 1 43 0 27 49 0 0 chr3 666637 666678 -226857900 + AT_rich Low_complexity Low_complexity 1 41 0 426 273 52 32 chr3 667648 667802 -226856776 - MIR SINE MIR -57 205 49 307 284 23 11 chr3 670960 671048 -226853530 - L2 LINE L2 -2 3311 3223 363 121 0 0 chr3 671325 671383 -226853195 + (GGAA)n Simple_repeat Simple_repeat 1 58 0 29 0 0 0 chr3 672237 672266 -226852312 + AT_rich Low_complexity Low_complexity 1 29 0 261 330 113 19 chr3 672916 673022 -226851556 - MIR3 SINE MIR -27 181 66 21 0 0 0 chr3 673098 673119 -226851459 + AT_rich Low_complexity Low_complexity 1 21 0 1617 127 19 16 chr3 673364 673671 -226850907 - AluY SINE Alu -3 308 1 319 347 8 0 chr3 673688 673809 -226850769 + MLT1J LTR MaLR 77 198 -313 378 337 126 0 chr3 674246 674501 -226850077 + MLT1K LTR MaLR 151 437 -151 325 264 18 27 chr3 674730 674840 -226849738 + MER117 DNA MER1_type 6 114 -83 3744 143 17 6 chr3 675681 676316 -226848262 + L1PA16 LINE L1 5516 6157 -9 249 190 0 38 chr3 676840 676919 -226847659 + MER116 DNA Mariner 5 80 0 1920 160 0 0 chr3 677066 677374 -226847204 + AluSx SINE Alu 1 308 0 1664 267 67 45 chr3 677374 677721 -226846857 + L1ME LINE L1 66 404 -5676 1822 207 14 8 chr3 677721 678084 -226846494 + MLT1A1 LTR MaLR 1 365 0 1664 267 67 45 chr3 678084 678954 -226845624 + L1ME LINE L1 404 1309 -4771 2422 51 0 0 chr3 679017 679310 -226845268 - AluY SINE Alu -17 294 2 676 275 26 17 chr3 679310 679590 -226844988 + L1ME LINE L1 1413 1697 -4383 21 36 0 0 chr3 680675 680703 -226843875 + AT_rich Low_complexity Low_complexity 1 28 0 2248 85 10 7 chr3 683355 683660 -226840918 + AluY SINE Alu 1 306 -5 522 338 39 13 chr3 683966 684197 -226840381 - MIR SINE MIR -1 261 25 189 200 89 0 chr3 684296 684341 -226840237 + L2 LINE L2 3265 3313 0 236 320 119 21 chr3 684745 684939 -226839639 - L2 LINE L2 -1136 2178 1966 300 300 40 72 chr3 685062 685312 -226839266 - MIR SINE MIR 0 262 21 210 37 0 0 chr3 685678 685705 -226838873 + (TTTTTG)n Simple_repeat Simple_repeat 4 30 0 1982 82 0 70 chr3 685778 685821 -226838757 - L1PA10 LINE L1 -11 6157 6113 180 0 0 0 chr3 685821 685841 -226838737 + (TTTG)n Simple_repeat Simple_repeat 1 20 0 1725 141 21 35 chr3 685841 686124 -226838454 - AluSg SINE Alu -31 279 1 1982 82 0 70 chr3 686124 686395 -226838183 - L1PA10 LINE L1 -53 6115 5864 916 243 13 26 chr3 686509 686735 -226837843 + MER58A DNA MER1_type 2 224 0 642 253 75 11 chr3 686941 687127 -226837451 + MLT1J2 LTR MaLR 39 236 -214 2149 155 13 28 chr3 687522 687916 -226836662 - MLT1B LTR MaLR -2 388 1 1752 182 18 3 chr3 688296 688636 -226835942 + MER7A DNA MER2_type 4 346 0 482 288 43 6 chr3 688872 689035 -226835543 - MIR SINE MIR -15 247 79 333 269 26 0 chr3 689368 689446 -226835132 - MER2 DNA MER2_type 0 345 266 2424 76 0 0 chr3 689461 689762 -226834816 - AluSc SINE Alu -8 301 1 1065 180 11 21 chr3 689762 689951 -226834627 - MER2 DNA MER2_type -158 187 1 470 234 11 4 chr3 692686 692963 -226831615 + (TA)n Simple_repeat Simple_repeat 1 279 0 2096 110 7 0 chr3 693959 694320 -226830258 + AluSq SINE Alu 1 363 0 1418 99 0 0 chr3 694320 694512 -226830066 + AluY SINE Alu 106 297 -14 283 271 59 42 chr3 694665 694783 -226829795 - MLT1K LTR MaLR -13 575 456 39 0 0 0 chr3 694828 694867 -226829711 + AT_rich Low_complexity Low_complexity 1 39 0 285 260 90 0 chr3 695032 695132 -226829446 - MIR SINE MIR -26 236 128 390 347 17 6 chr3 695720 695896 -226828682 - MIR SINE MIR -83 179 2 2171 162 7 55 chr3 696748 696911 -226827667 + Tigger2a DNA MER2_type 1 170 -2538 1886 147 0 42 chr3 696911 697224 -226827354 + AluSx SINE Alu 1 300 -12 2171 162 7 55 chr3 697224 697516 -226827062 + Tigger2a DNA MER2_type 170 434 0 257 262 0 0 chr3 698098 698193 -226826385 + (TG)n Simple_repeat Simple_repeat 1 95 0 1928 160 0 16 chr3 698309 698616 -226825962 + AluSx SINE Alu 1 302 -10 366 74 0 0 chr3 700228 700282 -226824296 + (TCCA)n Simple_repeat Simple_repeat 1 54 0 259 352 11 11 chr3 700287 700375 -226824203 - L2 LINE L2 -36 3277 3190 435 363 97 0 chr3 700628 700906 -226823672 - L2 LINE L2 -352 2962 2658 1005 280 53 51 chr3 701091 701866 -226822712 + L2 LINE L2 2542 3313 0 232 353 105 15 chr3 702023 702156 -226822422 - L2 LINE L2 0 3272 3128 1704 173 4 4 chr3 702492 702769 -226821809 + AluJo SINE Alu 2 278 -34 239 111 0 22 chr3 702773 702818 -226821760 + (GGAGAA)n Simple_repeat Simple_repeat 4 47 0 280 271 51 25 chr3 702949 703067 -226821511 + Charlie8 DNA MER1_type 368 488 -1929 1621 274 48 25 chr3 704043 704597 -226819981 + MLT1F1 LTR MaLR 1 567 0 212 317 20 20 chr3 704634 704735 -226819843 + MER5B DNA MER1_type 78 178 0 374 353 68 10 chr3 705375 705582 -226818996 + MIR SINE MIR 25 243 -19 234 329 40 79 chr3 706291 706519 -226818059 - L2 LINE L2 -48 3224 3006 339 255 98 0 chr3 707196 707298 -226817280 - MIR SINE MIR -136 126 15 568 187 90 15 chr3 708100 708234 -226816344 + L1MB2 LINE L1 6025 6168 -3 1496 207 18 3 chr3 708591 708876 -226815702 - AluJb SINE Alu -22 290 2 1723 155 14 47 chr3 709121 709417 -226815161 + AluJb SINE Alu 1 286 -26 201 94 0 0 chr3 709436 709468 -226815110 + (TAAAAA)n Simple_repeat Simple_repeat 4 35 0 686 307 77 25 chr3 710055 710420 -226814158 - LTR33 LTR ERVL -10 511 128 722 164 0 210 chr3 710425 710580 -226813998 - MER5A DNA MER1_type 0 189 100 897 143 0 8 chr3 710580 710713 -226813865 - FLAM_C SINE Alu 0 133 2 722 164 0 210 chr3 710713 710795 -226813783 - MER5A DNA MER1_type -89 100 2 259 273 16 62 chr3 710804 710932 -226813646 - LTR33 LTR ERVL -399 122 1 737 261 6 6 chr3 711432 711612 -226812966 + MER5A DNA MER1_type 10 189 0 330 247 31 31 chr3 711619 711716 -226812862 - MER5B DNA MER1_type 0 178 82 393 222 11 11 chr3 711765 711855 -226812723 + MLT1H LTR MaLR 73 162 -387 216 381 41 41 chr3 712012 712159 -226812419 + L2 LINE L2 3117 3263 -9 1198 130 0 0 chr3 713937 714114 -226810464 - AluSg/x SINE Alu -3 309 133 264 224 35 0 chr3 714274 714332 -226810246 + AluJ/FLAM SINE Alu 1 60 -242 377 278 17 9 chr3 715851 715966 -226808612 + L2 LINE L2 3190 3305 -8 479 351 52 12 chr3 716399 716647 -226807931 - MIR SINE MIR 0 262 5 201 242 15 30 chr3 717154 717220 -226807358 + GA-rich Low_complexity Low_complexity 4 68 0 831 186 6 27 chr3 718753 718936 -226805642 + MER96B DNA MER1_type? 1 179 -238 876 216 52 28 chr3 721019 721232 -226803346 + MER20 DNA MER1_type 2 219 0 232 353 39 0 chr3 721289 721391 -226803187 + L2 LINE L2 3167 3272 0 404 261 164 48 chr3 721792 721899 -226802679 - MER113 DNA MER1_type? -116 405 312 2202 117 7 0 chr3 721899 722208 -226802370 - AluSx SINE Alu -1 311 1 404 261 164 48 chr3 722208 722430 -226802148 - MER113 DNA MER1_type? -209 312 38 946 329 36 17 chr3 722999 723410 -226801168 - L3 LINE CR1 -213 1364 946 1615 178 52 0 chr3 723491 723778 -226800800 - AluJb SINE Alu -10 302 1 401 188 0 10 chr3 723800 723896 -226800682 + (TG)n Simple_repeat Simple_repeat 1 95 0 352 267 168 31 chr3 724097 724288 -226800290 + L2 LINE L2 3028 3244 -69 282 353 83 0 chr3 724339 724472 -226800106 + MER5A DNA MER1_type 46 189 0 1989 135 4 0 chr3 724540 724841 -226799737 + AluSx SINE Alu 1 302 0 23 78 0 0 chr3 727792 727843 -226796735 + AT_rich Low_complexity Low_complexity 1 51 0 362 326 23 0 chr3 727972 728101 -226796477 + MER103 DNA DNA 24 155 -11 272 400 22 22 chr3 729923 730058 -226794520 - L2 LINE L2 -4 3268 3134 195 322 164 0 chr3 730298 730450 -226794128 - L2 LINE L2 -400 2914 2738 26474 129 9 5 chr3 731125 736383 -226788195 - L1PA7 LINE L1 -1 6468 1189 988 155 23 5 chr3 736490 736681 -226787897 + AluSq SINE Alu 66 218 -95 1821 142 7 23 chr3 736965 737267 -226787311 - AluSx SINE Alu -15 297 1 1879 171 97 8 chr3 737515 737906 -226786672 + MSTB LTR MaLR 1 426 0 272 89 0 22 chr3 739016 739061 -226785517 + (GAAAA)n Simple_repeat Simple_repeat 2 45 0 22 0 0 0 chr3 739425 739447 -226785131 + AT_rich Low_complexity Low_complexity 1 22 0 1256 140 0 0 chr3 739523 739702 -226784876 - AluSg/x SINE Alu -2 310 132 270 294 76 11 chr3 739802 739894 -226784684 - L2 LINE L2 0 3272 3175 1799 252 21 14 chr3 740061 740493 -226784085 - MER82 DNA MER2_type -7 646 212 428 82 0 0 chr3 740494 740555 -226784023 + Alu SINE Alu 243 303 -9 900 215 19 10 chr3 740790 740999 -226783579 - MER82 DNA MER2_type -433 220 10 260 77 0 0 chr3 741059 741098 -226783480 + MADE1 DNA Mariner 42 80 0 2252 106 0 7 chr3 742419 742722 -226781856 + AluSx SINE Alu 1 301 -11 374 308 43 0 chr3 743130 743247 -226781331 - L2 LINE L2 -7 3265 3144 35 54 0 0 chr3 743247 743303 -226781275 + AT_rich Low_complexity Low_complexity 1 56 0 3630 99 25 2 chr3 743335 743851 -226780727 + MER41B LTR ERV1 1 528 -107 2011 154 0 0 chr3 743858 744156 -226780422 - AluSx SINE Alu -12 300 3 277 337 70 30 chr3 744421 744851 -226779727 + L1ME LINE L1 5370 5816 -346 243 0 0 0 chr3 745748 745775 -226778803 + (T)n Simple_repeat Simple_repeat 1 27 0 264 306 72 0 chr3 746249 746360 -226778218 - L2 LINE L2 -6 3307 3189 736 225 7 7 chr3 746575 746751 -226777827 - AluJb SINE Alu 0 310 135 1717 190 40 54 chr3 746753 746833 -226777745 - L1MB7 LINE L1 -10 6174 6094 718 217 0 0 chr3 746833 746962 -226777616 - FLAM_A SINE Alu -1 132 4 1717 190 40 54 chr3 746962 747360 -226777218 - L1MB7 LINE L1 -90 6094 5703 403 327 92 9 chr3 748549 748766 -226775812 - MIR SINE MIR -3 259 25 215 305 180 8 chr3 749220 749348 -226775230 + L2 LINE L2 3160 3309 -4 990 196 0 0 chr3 751148 751321 -226773257 - AluJb SINE Alu -5 307 135 243 264 36 82 chr3 752001 752111 -226772467 + MLT1K LTR MaLR 462 566 -22 194 152 0 22 chr3 753306 753352 -226771226 + GA-rich Low_complexity Low_complexity 2 46 0 336 154 0 0 chr3 753466 753518 -226771060 + L2 LINE L2 3261 3312 -1 1794 175 0 3 chr3 754071 754362 -226770216 - AluJb SINE Alu -22 290 1 22 35 0 0 chr3 755891 755920 -226768658 + AT_rich Low_complexity Low_complexity 1 29 0 234 150 0 0 chr3 755956 755996 -226768582 + (GAAA)n Simple_repeat Simple_repeat 4 43 0 1563 241 43 108 chr3 756029 756587 -226767991 - MLT1F1 LTR MaLR 0 567 24 805 115 0 0 chr3 756603 756749 -226767829 + AluSg/x SINE Alu 177 322 0 237 180 20 0 chr3 757154 757204 -226767374 - MLT1I LTR MaLR -1 408 358 611 306 97 12 chr3 757257 757505 -226767073 - MLT1I LTR MaLR -140 269 1 2016 186 3 3 chr3 757971 758336 -226766242 - MLT1A1 LTR MaLR 0 365 1 22 0 0 0 chr3 759380 759402 -226765176 + AT_rich Low_complexity Low_complexity 1 22 0 242 312 37 37 chr3 761545 761654 -226762924 + MIR SINE MIR 59 167 -95 41 98 0 0 chr3 762676 762808 -226761770 + AT_rich Low_complexity Low_complexity 1 132 0 602 177 39 31 chr3 762998 763128 -226761450 + FLAM_C SINE Alu 1 131 -2 255 285 228 13 chr3 763132 763290 -226761288 - MIR SINE MIR -43 219 28 215 204 0 0 chr3 763570 763614 -226760964 + (TG)n Simple_repeat Simple_repeat 2 45 0 259 320 33 40 chr3 763875 764025 -226760553 + L2 LINE L2 3164 3312 -1 1737 174 7 0 chr3 764079 764367 -226760211 - AluSx SINE Alu -22 290 1 823 132 0 76 chr3 764370 764514 -226760064 - AluSq/x SINE Alu -179 133 1 214 132 38 0 chr3 764556 764609 -226759969 + (TA)n Simple_repeat Simple_repeat 1 55 0 24 0 0 0 chr3 764609 764633 -226759945 + AT_rich Low_complexity Low_complexity 1 24 0 2058 105 10 27 chr3 764633 764928 -226759650 - AluSx SINE Alu -22 290 1 234 206 0 0 chr3 766136 766199 -226758379 + (TCTA)n Simple_repeat Simple_repeat 3 65 0 225 0 0 0 chr3 766660 766685 -226757893 + (CA)n Simple_repeat Simple_repeat 2 26 0 184 370 19 37 chr3 768740 768848 -226755730 + MIR SINE MIR 34 139 -123 22 0 0 0 chr3 769415 769437 -226755141 + AT_rich Low_complexity Low_complexity 1 22 0 2275 120 3 0 chr3 769749 770058 -226754520 - AluSx SINE Alu -2 310 1 533 261 72 26 chr3 771755 772061 -226752517 - L1ME4a LINE L1 -111 6010 5691 327 191 0 0 chr3 772358 772426 -226752152 + (TATG)n Simple_repeat Simple_repeat 2 69 0 189 200 67 50 chr3 772964 773024 -226751554 + L2 LINE L2 3252 3312 -1 213 39 0 0 chr3 773168 773194 -226751384 + (TTA)n Simple_repeat Simple_repeat 2 27 0 1234 0 7 0 chr3 773198 773337 -226751241 - L1PA2 LINE L1 -13 6142 6003 602 198 39 82 chr3 773482 773664 -226750914 + MIR SINE MIR 78 251 -11 322 156 104 0 chr3 774378 774455 -226750123 - MIR SINE MIR -114 148 64 207 183 100 17 chr3 774457 774517 -226750061 - L2 LINE L2 0 3272 3208 221 333 48 67 chr3 775051 775216 -226749362 - MIR3 SINE MIR -9 199 38 1855 135 63 44 chr3 775265 775629 -226748949 + THE1C LTR MaLR 1 371 -4 304 393 61 9 chr3 775753 775982 -226748596 + MIR SINE MIR 14 254 -8 2190 107 9 25 chr3 776824 777142 -226747436 + AluSq SINE Alu 1 313 0 301 338 79 12 chr3 777395 777616 -226746962 - MIR SINE MIR -20 242 6 35 0 0 0 chr3 777767 777802 -226746776 + AT_rich Low_complexity Low_complexity 1 35 0 6036 140 14 5 chr3 777802 779187 -226745391 - L1PB1 LINE L1 -8 6143 4745 195 129 0 0 chr3 780357 780388 -226744190 + (TATATG)n Simple_repeat Simple_repeat 2 32 0 2305 71 0 0 chr3 780496 780812 -226743766 + AluY SINE Alu 1 316 0 204 97 0 0 chr3 780849 780880 -226743698 + (CA)n Simple_repeat Simple_repeat 2 32 0 195 360 67 20 chr3 783484 783634 -226740944 + MIR SINE MIR 79 235 -27 783 172 30 24 chr3 786640 786809 -226737769 - L1MA10 LINE L1 -2 6332 6163 1110 248 22 101 chr3 788056 788156 -226736422 - MER34 LTR ERV1 -4 538 432 1751 159 11 0 chr3 788156 788426 -226736152 - AluJo SINE Alu -19 293 21 1110 248 22 101 chr3 788426 788909 -226735669 - MER34 LTR ERV1 -110 432 1 369 309 119 66 chr3 789084 789327 -226735251 - L2 LINE L2 -3 3269 3014 298 364 43 7 chr3 789494 789634 -226734944 + MIR SINE MIR 22 166 -96 524 248 16 23 chr3 789681 789810 -226734768 + MIR3 SINE MIR 74 201 -7 360 0 0 0 chr3 790543 790583 -226733995 + (TA)n Simple_repeat Simple_repeat 2 41 0 392 297 77 32 chr3 791168 791323 -226733255 + MIR SINE MIR 12 173 -89 371 284 76 56 chr3 791793 791990 -226732588 + L2 LINE L2 3113 3313 0 231 286 254 8 chr3 792086 792212 -226732366 - MIR SINE MIR -10 252 96 636 255 99 28 chr3 792222 792434 -226732144 + LTR16A LTR ERVL 16 242 -208 188 258 61 15 chr3 792689 792755 -226731823 - L2 LINE L2 -456 2858 2790 1160 196 57 75 chr3 792756 793128 -226731450 - MLT1A1 LTR MaLR 0 365 1 826 230 52 28 chr3 794644 794857 -226729721 + MER20 DNA MER1_type 2 219 0 211 363 39 0 chr3 794914 795016 -226729562 + L2 LINE L2 3167 3272 0 376 283 155 50 chr3 795309 795524 -226729054 - MER113 DNA MER1_type? 0 521 330 2223 113 7 0 chr3 795524 795833 -226728745 - AluSx SINE Alu -1 311 1 376 283 155 50 chr3 795833 796055 -226728523 - MER113 DNA MER1_type? -191 330 38 946 329 36 17 chr3 796624 797035 -226727543 - L3 LINE CR1 -213 1364 946 1607 178 52 0 chr3 797116 797402 -226727176 - AluJb SINE Alu -11 301 1 422 177 0 10 chr3 797424 797520 -226727058 + (TG)n Simple_repeat Simple_repeat 1 95 0 352 267 168 31 chr3 797721 797912 -226726666 + L2 LINE L2 3028 3244 -69 282 353 83 0 chr3 797963 798096 -226726482 + MER5A DNA MER1_type 46 189 0 1989 135 4 0 chr3 798164 798465 -226726113 + AluSx SINE Alu 1 302 0 229 216 14 14 chr3 799487 799561 -226725017 + GA-rich Low_complexity Low_complexity 2 75 0 243 364 54 27 chr3 799646 799830 -226724748 + MIR3 SINE MIR 19 207 -1 414 330 40 30 chr3 800629 800929 -226723649 - MER102b DNA MER1_type 0 341 39 182 255 0 43 chr3 803108 803155 -226721423 - L2 LINE L2 -11 3261 3217 660 294 89 5 chr3 803194 803408 -226721170 + MIR SINE MIR 14 245 -17 1920 146 0 4 chr3 806298 806579 -226717999 + AluSx SINE Alu 1 280 -32 362 21 21 0 chr3 806579 806626 -226717952 + (TAAAA)n Simple_repeat Simple_repeat 1 48 0 1920 144 3 3 chr3 807588 807872 -226716706 - AluSq SINE Alu -29 284 1 735 237 163 62 chr3 808636 809139 -226715439 - MLT1H1 LTR MaLR 0 555 2 263 288 25 0 chr3 809241 809332 -226715246 + MIR SINE MIR 84 147 -61 1066 124 0 0 chr3 809347 809492 -226715086 + FRAM SINE Alu 9 153 -23 505 304 196 22 chr3 810844 811206 -226713372 - L2 LINE L2 -2 3311 2887 333 325 88 53 chr3 811866 812149 -226712429 + L2 LINE L2 2623 2915 -399 280 297 68 27 chr3 813131 813279 -226711299 - MIR SINE MIR -73 189 36 21 0 0 0 chr3 813887 813908 -226710670 + AT_rich Low_complexity Low_complexity 1 21 0 222 250 33 0 chr3 813945 814005 -226710573 - MIR SINE MIR -27 235 174 33 56 0 0 chr3 814117 814171 -226710407 + AT_rich Low_complexity Low_complexity 1 54 0 186 267 0 67 chr3 814220 814265 -226710313 + L2 LINE L2 3164 3205 -67 2336 94 0 0 chr3 814654 814963 -226709615 + AluY SINE Alu 1 309 -2 803 243 66 22 chr3 814963 815189 -226709389 + MIR SINE MIR 22 257 -5 189 0 0 0 chr3 817319 817340 -226707238 + (TTTTC)n Simple_repeat Simple_repeat 5 25 0 400 77 31 0 chr3 818925 818990 -226705588 + (CA)n Simple_repeat Simple_repeat 2 68 0 771 270 47 9 chr3 819040 819251 -226705327 + MER20 DNA MER1_type 1 219 0 931 282 78 54 chr3 819531 819606 -226704972 - L1MEc LINE L1 -3921 2475 2403 2318 113 0 0 chr3 819606 819906 -226704672 - AluSx SINE Alu -12 300 1 931 282 78 54 chr3 819906 820735 -226703843 - L1MEc LINE L1 -3993 2403 1549 527 221 29 0 chr3 820735 820839 -226703739 - U6 snRNA snRNA 0 107 1 201 147 0 0 chr3 821548 821582 -226702996 + (TCTA)n Simple_repeat Simple_repeat 2 35 0 525 229 52 81 chr3 821696 821906 -226702672 - MER20 DNA MER1_type -15 204 1 510 287 145 18 chr3 822059 822341 -226702237 - L2 LINE L2 0 3313 2996 505 278 126 36 chr3 823562 823785 -226700793 + MIR SINE MIR 7 249 -13 4283 105 21 10 chr3 824258 824375 -226700203 - MER41B LTR ERV1 0 635 521 2374 102 0 6 chr3 824375 824688 -226699890 + AluSx SINE Alu 1 311 -1 4283 105 21 10 chr3 824688 825198 -226699380 - MER41B LTR ERV1 -114 521 1 35 54 0 0 chr3 825230 825286 -226699292 + AT_rich Low_complexity Low_complexity 1 56 0 374 308 43 0 chr3 825286 825403 -226699175 + L2 LINE L2 3144 3265 -7 2252 106 0 7 chr3 825811 826114 -226698464 - AluSx SINE Alu -11 301 1 260 77 0 0 chr3 827435 827474 -226697104 - MADE1 DNA Mariner 0 80 42 1006 191 19 10 chr3 827534 827743 -226696835 + MER82 DNA MER2_type 10 220 -433 428 82 0 0 chr3 827978 828039 -226696539 - Alu SINE Alu -9 302 242 1805 254 21 14 chr3 828040 828477 -226696101 + MER82 DNA MER2_type 212 651 -2 270 294 76 11 chr3 828639 828731 -226695847 + L2 LINE L2 3175 3272 0 1256 140 0 0 chr3 828831 829010 -226695568 + AluSg/x SINE Alu 130 308 -2 22 0 0 0 chr3 829086 829108 -226695470 + AT_rich Low_complexity Low_complexity 1 22 0 272 89 0 22 chr3 829472 829517 -226695061 + (TTTTC)n Simple_repeat Simple_repeat 2 45 0 1879 171 97 8 chr3 830627 831018 -226693560 - MSTB LTR MaLR 0 426 1 1821 142 7 23 chr3 831266 831568 -226693010 + AluSx SINE Alu 1 297 -15 229 54 0 0 chr3 831852 831889 -226692689 - AluSq SINE Alu -4 295 259 1074 154 6 6 chr3 831890 832059 -226692519 - AluSq SINE Alu -95 218 50 1803 168 0 3 chr3 832083 832374 -226692204 + AluJb SINE Alu 1 290 -22 336 154 0 0 chr3 832927 832979 -226691599 - L2 LINE L2 -1 3312 3261 194 152 0 22 chr3 833093 833139 -226691439 + CT-rich Low_complexity Low_complexity 2 46 0 243 264 36 82 chr3 834334 834444 -226690134 - MLT1K LTR MaLR -22 566 462 990 196 0 0 chr3 835124 835297 -226689281 + AluJb SINE Alu 135 307 -5 220 295 209 8 chr3 837097 837226 -226687352 - L2 LINE L2 -4 3309 3155 271 400 22 22 chr3 838602 838737 -226685841 - L2 LINE L2 -4 3268 3134 192 322 164 0 chr3 838977 839129 -226685449 - L2 LINE L2 -400 2914 2738 16224 94 11 7 chr3 839798 842961 -226681617 - L1PA7 LINE L1 -1 6153 2978 220 189 44 22 chr3 843685 843775 -226680803 + (TA)n Simple_repeat Simple_repeat 2 93 0 24 67 0 0 chr3 843889 843934 -226680644 + AT_rich Low_complexity Low_complexity 1 45 0 283 210 65 0 chr3 846570 846708 -226677870 + (TA)n Simple_repeat Simple_repeat 2 148 0 1235 216 61 22 chr3 847414 847861 -226676717 - AluJo SINE Alu 0 458 1 871 206 79 14 chr3 848209 848423 -226676155 + AluJo SINE Alu 1 228 -84 3789 175 36 1 chr3 848623 849362 -226675216 - L1MC1 LINE L1 -9 6324 5560 482 261 36 12 chr3 849482 849647 -226674931 - MER20B DNA MER1_type -604 179 11 397 199 0 3 chr3 849772 849871 -226674707 + L1ME3 LINE L1 6066 6163 -1 213 39 0 0 chr3 852344 852370 -226672208 + (TC)n Simple_repeat Simple_repeat 2 27 0 * 453 36 0 0 chr3 852369 852424 -226672154 + (TA)n Simple_repeat Simple_repeat 2 56 0 877 261 123 64 chr3 852480 852993 -226671585 - MLT1H LTR MaLR -6 543 1 192 277 213 19 chr3 853243 853398 -226671180 - MIR SINE MIR -65 197 13 3191 130 74 42 chr3 853809 854402 -226670176 - LTR9 LTR ERV1 0 612 1 386 103 176 0 chr3 854427 854495 -226670083 + MADE1 DNA Mariner 1 80 0 976 110 65 0 chr3 854688 854843 -226669735 + L1MA3 LINE L1 6141 6305 0 1215 148 10 5 chr3 857004 857206 -226667372 + L1PA16 LINE L1 5784 5986 -180 1146 171 9 14 chr3 857231 857447 -226667131 + L1PA16 LINE L1 5951 6165 -1 186 43 0 0 chr3 857645 857668 -226666910 + (A)n Simple_repeat Simple_repeat 1 23 0 930 231 0 0 chr3 858595 858768 -226665810 + FAM SINE Alu 1 173 -2 253 347 13 13 chr3 859065 859215 -226665363 + MER113 DNA MER1_type? 336 485 -36 193 347 137 0 chr3 859233 859328 -226665250 - L3 LINE CR1 -23 1554 1447 22 56 0 0 chr3 860351 860387 -226664191 + AT_rich Low_complexity Low_complexity 1 36 0 624 248 7 7 chr3 860433 860578 -226664000 + Charlie1a DNA MER1_type 9 153 -1302 1262 160 106 13 chr3 860580 860684 -226663894 + AluJo SINE Alu 1 94 -218 356 55 18 0 chr3 860684 860739 -226663839 + (TA)n Simple_repeat Simple_repeat 1 56 0 1262 160 106 13 chr3 860739 860871 -226663707 + AluJo SINE Alu 94 259 -53 2659 222 113 35 chr3 860871 861787 -226662791 + Charlie1a DNA MER1_type 191 1178 -277 760 188 0 14 chr3 861788 861932 -226662646 + FRAM SINE Alu 20 161 -15 794 197 89 37 chr3 861935 862204 -226662374 + Charlie1a DNA MER1_type 1168 1450 -5 241 250 83 0 chr3 862207 862279 -226662299 - MIR3 SINE MIR -46 162 85 279 0 0 0 chr3 862657 862688 -226661890 + (TTTA)n Simple_repeat Simple_repeat 2 32 0 447 218 0 0 chr3 862692 862779 -226661799 - AluJ SINE Alu -26 286 200 762 196 0 14 chr3 862786 862929 -226661649 - AluJ SINE Alu -171 141 1 30 0 0 0 chr3 863689 863719 -226660859 + AT_rich Low_complexity Low_complexity 1 30 0 21 36 0 0 chr3 864614 864642 -226659936 + AT_rich Low_complexity Low_complexity 1 28 0 323 310 115 19 chr3 865418 865731 -226658847 + L1ME4a LINE L1 5514 5856 -265 36 0 0 0 chr3 865941 865977 -226658601 + AT_rich Low_complexity Low_complexity 1 36 0 219 320 80 40 chr3 866538 866663 -226657915 + MIR SINE MIR 59 188 -74 450 254 0 51 chr3 866877 866995 -226657583 - MLT1I LTR MaLR -213 196 85 278 258 0 0 chr3 867600 867666 -226656912 + GA-rich Low_complexity Low_complexity 3 68 0 297 331 7 0 chr3 867727 867872 -226656706 + L1ME LINE L1 2217 2362 -3784 442 290 59 5 chr3 867918 868139 -226656439 + L1ME LINE L1 2473 2705 -3441 718 230 33 53 chr3 868183 868544 -226656034 + L1ME LINE L1 2795 3148 -2998 350 290 82 51 chr3 868543 868957 -226655621 + L1ME LINE L1 4419 4845 -1301 * 186 103 0 0 chr3 868992 869021 -226655557 + (TC)n Simple_repeat Simple_repeat 2 30 0 232 315 22 0 chr3 869041 869133 -226655445 + L1ME LINE L1 4918 5011 -1135 1512 174 0 78 chr3 869214 869248 -226655330 - AluJo SINE Alu -2 310 275 279 0 0 0 chr3 869248 869279 -226655299 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 1512 174 0 78 chr3 869279 869578 -226655000 - AluJo SINE Alu -37 275 3 309 337 70 30 chr3 869843 870273 -226654305 + L1ME LINE L1 5370 5816 -346 23 0 0 0 chr3 871161 871184 -226653394 + AT_rich Low_complexity Low_complexity 1 23 0 265 306 72 0 chr3 871658 871769 -226652809 - L2 LINE L2 -6 3307 3189 198 0 0 0 chr3 871984 872006 -226652572 + (TTTG)n Simple_repeat Simple_repeat 2 23 0 929 184 0 0 chr3 872009 872161 -226652417 - AluJb SINE Alu -26 286 135 1780 190 40 52 chr3 872163 872242 -226652336 - L1MB7 LINE L1 -10 6174 6096 710 217 0 0 chr3 872242 872371 -226652207 - FLAM_A SINE Alu -1 132 4 1780 190 40 52 chr3 872371 872769 -226651809 - L1MB7 LINE L1 -88 6096 5703 443 324 97 8 chr3 873963 874201 -226650377 - MIR SINE MIR -3 259 1 2135 49 0 28 chr3 875219 875418 -226649160 - AluY SINE Alu -2 309 119 5149 52 12 12 chr3 875418 876085 -226648493 - L1PA5 LINE L1 -13 6141 5475 2135 49 0 28 chr3 876085 876169 -226648409 - AluY SINE Alu -192 119 34 30 27 0 0 chr3 876360 876397 -226648181 + AT_rich Low_complexity Low_complexity 1 37 0 23 78 0 0 chr3 881247 881298 -226643280 + AT_rich Low_complexity Low_complexity 1 51 0 361 333 23 0 chr3 881427 881556 -226643022 + MER103 DNA DNA 24 155 -11 27 0 0 0 chr3 882377 882404 -226642174 + AT_rich Low_complexity Low_complexity 1 27 0 216 0 0 0 chr3 882505 882529 -226642049 + (CA)n Simple_repeat Simple_repeat 2 25 0 21 57 0 0 chr3 882836 882871 -226641707 + AT_rich Low_complexity Low_complexity 1 35 0 715 203 0 0 chr3 882902 883025 -226641553 + FRAM SINE Alu 22 144 -32 208 51 26 26 chr3 883025 883064 -226641514 + (TAAAA)n Simple_repeat Simple_repeat 1 39 0 1868 146 0 0 chr3 883480 883821 -226640757 - AluY SINE Alu 0 341 1 208 305 84 11 chr3 886247 886342 -226638236 + MIR SINE MIR 63 164 -98 21 57 0 0 chr3 887358 887393 -226637185 + AT_rich Low_complexity Low_complexity 1 35 0 189 350 41 16 chr3 887977 888100 -226636478 + MIR3 SINE MIR 75 200 -8 246 330 30 20 chr3 891057 891157 -226633421 + MIR3 SINE MIR 81 181 -27 27 29 0 0 chr3 892223 892257 -226632321 + AT_rich Low_complexity Low_complexity 1 34 0 252 59 0 0 chr3 892465 892499 -226632079 + (CA)n Simple_repeat Simple_repeat 2 35 0 29 47 0 0 chr3 893026 893069 -226631509 + AT_rich Low_complexity Low_complexity 1 43 0 226 328 0 0 chr3 893179 893246 -226631332 + Zaphod DNA AcHobo 1 67 -3964 509 286 128 17 chr3 893377 893667 -226630911 + MER115 DNA AcHobo 370 691 -2 230 352 28 0 chr3 893680 893788 -226630790 + MIR SINE MIR 40 150 -112 766 231 55 39 chr3 893850 894105 -226630473 + MIR SINE MIR 4 262 0 200 231 58 0 chr3 894381 894433 -226630145 - MIR SINE MIR -77 185 131 * 636 277 190 34 chr3 894431 895124 -226629454 - L2 LINE L2 0 3313 2498 212 351 72 9 chr3 895115 895226 -226629352 - MIR SINE MIR -68 140 23 * 321 309 123 25 chr3 895442 895604 -226628974 - MIR SINE MIR -54 208 31 1733 206 65 54 chr3 896085 896581 -226627997 - MLT1D LTR MaLR 0 505 5 286 331 32 16 chr3 896629 896753 -226627825 - L2 LINE L2 -6 3266 3141 379 115 57 8 chr3 896992 897114 -226627464 + (TA)n Simple_repeat Simple_repeat 1 128 0 225 359 58 6 chr3 897173 897329 -226627249 + MIR SINE MIR 99 262 0 1954 146 19 10 chr3 897332 897641 -226626937 - AluSx SINE Alu 0 312 1 4242 20 0 2 chr3 898629 899125 -226625453 - L1PA2 LINE L1 -1 6154 5660 3730 18 0 0 chr3 899125 899567 -226625011 + L1P LINE L1 4857 5298 -848 831 186 6 27 chr3 900442 900625 -226623953 - MER96B DNA MER1_type? -238 179 1 201 242 15 30 chr3 902158 902224 -226622354 + CT-rich Low_complexity Low_complexity 4 68 0 479 351 52 12 chr3 902731 902979 -226621599 + MIR SINE MIR 5 262 0 377 278 17 9 chr3 903412 903527 -226621051 - L2 LINE L2 -8 3305 3190 2212 121 0 0 chr3 904227 904524 -226620054 + AluSx SINE Alu 1 297 -15 527 298 13 77 chr3 905391 905626 -226618952 + MIR SINE MIR 15 234 -28 1275 142 0 10 chr3 905703 905907 -226618671 - L1PA8A LINE L1 -3 6443 6242 26104 138 9 17 chr3 905909 912092 -226612486 - L1PA8A LINE L1 -250 6196 2 475 299 137 10 chr3 913704 913901 -226610677 - MIR SINE MIR -10 252 31 328 327 9 0 chr3 914178 914288 -226610290 + MLT1I LTR MaLR 281 391 -18 277 348 106 12 chr3 914341 914502 -226610076 - MER5A DNA MER1_type -13 176 1 263 382 21 21 chr3 915382 915526 -226609052 - MER5A DNA MER1_type -44 145 2 303 306 104 22 chr3 916583 916717 -226607861 + LTR33 LTR ERVL 3 147 -374 22 0 0 0 chr3 917795 917817 -226606761 + AT_rich Low_complexity Low_complexity 1 22 0 353 345 76 29 chr3 919041 919212 -226605366 - MER5A DNA MER1_type -3 186 8 4494 155 20 27 chr3 919350 920135 -226604443 - LTR39 LTR ERV1 -2 781 2 26 0 0 0 chr3 921518 921544 -226603034 + AT_rich Low_complexity Low_complexity 1 26 0 22 0 0 0 chr3 922184 922206 -226602372 + AT_rich Low_complexity Low_complexity 1 22 0 183 376 56 16 chr3 922361 922486 -226602092 - MIR SINE MIR -76 186 57 2226 124 0 0 chr3 923586 923884 -226600694 + AluSg SINE Alu 1 298 -12 1126 146 34 0 chr3 924859 925065 -226599513 + L1MA8 LINE L1 6067 6279 -12 25 0 0 0 chr3 925570 925595 -226598983 + AT_rich Low_complexity Low_complexity 1 25 0 2348 92 3 6 chr3 926304 926618 -226597960 + AluSp SINE Alu 1 313 0 180 244 133 33 chr3 927255 927345 -226597233 + L3 LINE CR1 1051 1149 -428 199 300 38 12 chr3 927575 927655 -226596923 - L2 LINE L2 -5 3308 3227 437 214 161 0 chr3 928283 928395 -226596183 + MIR SINE MIR 133 262 0 2038 132 10 16 chr3 929271 929574 -226595004 + AluSx SINE Alu 1 301 -11 22 0 0 0 chr3 929634 929656 -226594922 + AT_rich Low_complexity Low_complexity 1 22 0 868 270 23 0 chr3 929967 930182 -226594396 + MER58A DNA MER1_type 1 220 -4 271 353 131 18 chr3 930871 931029 -226593549 - MIR SINE MIR -10 252 61 2140 55 0 0 chr3 931029 931286 -226593292 + AluY SINE Alu 40 296 -15 271 353 131 18 chr3 931286 931348 -226593230 - MIR SINE MIR -201 61 7 32 0 0 0 chr3 931593 931625 -226592953 + AT_rich Low_complexity Low_complexity 1 32 0 309 322 29 41 chr3 931735 931906 -226592672 - L1 LINE L1 -1854 4292 4124 260 214 95 24 chr3 931969 932053 -226592525 + MIR SINE MIR 30 119 -89 195 387 13 0 chr3 932136 932211 -226592367 + L2 LINE L2 3182 3257 -15 376 267 112 64 chr3 932425 932612 -226591966 + MIR SINE MIR 2 197 -65 454 108 12 48 chr3 933730 933813 -226590765 - MADE1 DNA Mariner 0 80 1 24 0 0 0 chr3 935375 935399 -226589179 + AT_rich Low_complexity Low_complexity 1 24 0 2314 89 7 3 chr3 937399 937701 -226586877 + AluSq SINE Alu 2 304 -9 1155 126 11 0 chr3 938688 938862 -226585716 + AluSg/x SINE Alu 131 306 -6 1749 199 0 0 chr3 938939 939240 -226585338 - AluSx SINE Alu -11 301 1 22 35 0 0 chr3 940769 940798 -226583780 + AT_rich Low_complexity Low_complexity 1 29 0 255 125 0 0 chr3 940834 940874 -226583704 + (GAAA)n Simple_repeat Simple_repeat 4 43 0 1576 239 43 108 chr3 940907 941465 -226583113 - MLT1F1 LTR MaLR 0 567 24 822 113 0 0 chr3 941481 941587 -226582991 + AluSg/x SINE Alu 177 282 -28 195 114 0 0 chr3 941592 941627 -226582951 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 237 180 20 0 chr3 942032 942082 -226582496 - MLT1I LTR MaLR -1 408 358 600 311 97 12 chr3 942135 942383 -226582195 - MLT1I LTR MaLR -140 269 1 2004 189 3 3 chr3 942849 943214 -226581364 - MLT1A1 LTR MaLR 0 365 1 22 0 0 0 chr3 944258 944280 -226580298 + AT_rich Low_complexity Low_complexity 1 22 0 252 312 37 37 chr3 946424 946533 -226578045 + MIR SINE MIR 59 167 -95 54 84 0 0 chr3 947555 947686 -226576892 + AT_rich Low_complexity Low_complexity 1 131 0 615 177 39 23 chr3 947876 948006 -226576572 + FLAM_C SINE Alu 1 132 -1 251 316 221 6 chr3 948010 948168 -226576410 - MIR SINE MIR -43 219 28 792 354 116 27 chr3 949148 949854 -226574724 + L2 LINE L2 2112 2880 -434 279 282 68 61 chr3 950212 950375 -226574203 + LTR16C LTR ERVL 326 489 -2 355 383 19 13 chr3 950597 950751 -226573827 + L2 LINE L2 3118 3272 0 1050 293 137 19 chr3 950820 951666 -226572912 + L2 LINE L2 2355 3312 -1 21 57 0 0 chr3 952064 952099 -226572479 + AT_rich Low_complexity Low_complexity 1 35 0 22 0 0 0 chr3 952176 952198 -226572380 + AT_rich Low_complexity Low_complexity 1 22 0 236 275 0 14 chr3 952786 952855 -226571723 + MIR SINE MIR 174 241 -21 574 274 104 0 chr3 953123 953287 -226571291 - MER5A DNA MER1_type -8 181 1 324 0 0 0 chr3 954845 954881 -226569697 + (CA)n Simple_repeat Simple_repeat 1 36 0 3262 159 17 22 chr3 955842 956426 -226568152 + L1PA16 LINE L1 5493 6073 -93 614 254 122 0 chr3 956822 957019 -226567559 + MER58A DNA MER1_type 2 222 -2 657 290 106 5 chr3 958251 958468 -226566110 + MIR SINE MIR 8 246 -16 306 258 68 79 chr3 958621 958811 -226565767 + MLT1L LTR MaLR 207 394 -221 23 54 0 0 chr3 959137 959174 -226565404 + AT_rich Low_complexity Low_complexity 1 37 0 1645 154 10 61 chr3 959401 959713 -226564865 + AluSq SINE Alu 1 296 -17 680 165 31 16 chr3 960151 960278 -226564300 + FLAM_C SINE Alu 1 129 -4 561 287 59 31 chr3 960887 961201 -226563377 + MLT1I LTR MaLR 56 405 -4 356 350 85 0 chr3 961228 961428 -226563150 + L2 LINE L2 1753 1969 -1345 566 310 78 52 chr3 961428 961815 -226562763 + L2 LINE L2 2576 2972 -342 1471 267 95 40 chr3 961863 962358 -226562220 + MLT1E LTR MaLR 35 556 -37 190 346 51 0 chr3 962419 962497 -226562081 + L2 LINE L2 2992 3073 -240 225 263 126 53 chr3 962555 962650 -226561928 + MLT1J LTR MaLR 1 102 -409 266 315 117 9 chr3 962650 962761 -226561817 + MIR SINE MIR 140 262 0 189 200 140 0 chr3 962941 962991 -226561587 - L2 LINE L2 -8 3264 3208 468 290 58 0 chr3 963473 963611 -226560967 - MIR SINE MIR -17 245 100 717 223 38 0 chr3 964711 964868 -226559710 + MER3 DNA MER1_type 37 199 -10 241 304 88 35 chr3 967474 967645 -226556933 - MLT1L LTR MaLR -229 386 207 449 302 23 0 chr3 967675 967804 -226556774 - MLT1L LTR MaLR -353 262 131 377 270 0 11 chr3 967911 968000 -226556578 - MER2 DNA MER2_type -250 95 8 893 313 79 25 chr3 969070 969502 -226555076 + LTR16B LTR ERVL 8 462 -2 21 0 0 0 chr3 969545 969566 -226555012 + AT_rich Low_complexity Low_complexity 1 21 0 551 321 71 35 chr3 969581 970032 -226554546 - L1MC4a LINE L1 -1969 5839 5373 193 246 98 0 chr3 971330 971391 -226553187 - MIR SINE MIR -27 235 169 856 262 81 89 chr3 971413 971806 -226552772 + LTR16B LTR ERVL 1 390 -74 421 101 0 38 chr3 971812 971891 -226552687 + (TTTC)n Simple_repeat Simple_repeat 1 76 0 314 285 16 41 chr3 971921 971958 -226552620 + LTR16B LTR ERVL 345 381 -83 1772 148 0 0 chr3 971958 972222 -226552356 - AluSx SINE Alu -44 268 5 314 285 16 41 chr3 972222 972307 -226552271 + LTR16B LTR ERVL 381 464 0 724 303 133 39 chr3 972647 973129 -226551449 + MLT1H LTR MaLR 18 544 -5 823 306 144 13 chr3 973157 973690 -226550888 + MLT1L LTR MaLR 1 603 -12 21 0 0 0 chr3 973968 973989 -226550589 + AT_rich Low_complexity Low_complexity 1 21 0 377 216 216 8 chr3 975562 975696 -226548882 + MLT1H LTR MaLR 1 162 -387 321 293 79 43 chr3 975868 976121 -226548457 + MLT1H LTR MaLR 294 555 0 4862 120 3 0 chr3 976959 977676 -226546902 + L1PA11 LINE L1 5455 6173 -1 323 67 0 0 chr3 977983 978028 -226546550 - MLT2A1 LTR ERVL -10 434 390 378 267 0 0 chr3 978029 978119 -226546459 - L1MC4 LINE L1 -1339 6703 6614 279 173 0 0 chr3 978121 978173 -226546405 + (CA)n Simple_repeat Simple_repeat 2 53 0 862 65 0 0 chr3 978174 978281 -226546297 - HERVL LTR ERVL -1239 4415 4309 319 86 69 26 chr3 978281 978397 -226546181 + (TA)n Simple_repeat Simple_repeat 1 121 0 2797 86 35 15 chr3 978397 978794 -226545784 - MLT2A1 LTR ERVL -39 405 1 33023 73 6 12 chr3 978794 984474 -226540104 - HERVL-A1-A1 LTR ERVL 0 5654 1 3240 71 40 0 chr3 984477 984902 -226539676 - MLT2A1 LTR ERVL -2 442 1 180 111 0 0 chr3 985003 985030 -226539548 + (CAAAA)n Simple_repeat Simple_repeat 4 30 0 1375 168 50 42 chr3 985562 985824 -226538754 + AluJb SINE Alu 1 264 -48 603 86 19 9 chr3 987130 987235 -226537343 + (TA)n Simple_repeat Simple_repeat 1 106 0 24 67 0 0 chr3 987264 987309 -226537269 + AT_rich Low_complexity Low_complexity 1 45 0 809 243 0 0 chr3 987309 987461 -226537117 + AluJb SINE Alu 129 280 -32 1969 149 39 3 chr3 987517 987852 -226536726 - MER7A DNA MER2_type 0 346 2 486 266 65 26 chr3 988505 988659 -226535919 - MIR SINE MIR 0 262 103 258 210 60 60 chr3 989708 989808 -226534770 + MIR SINE MIR 100 199 -63 230 295 162 0 chr3 990031 990136 -226534442 - MIR SINE MIR -101 161 40 387 152 27 18 chr3 990642 990754 -226533824 + MER96B DNA MER1_type? 66 178 -239 270 183 0 0 chr3 990886 990957 -226533621 + (TA)n Simple_repeat Simple_repeat 1 71 0 296 284 0 0 chr3 990965 991046 -226533532 + MER96B DNA MER1_type? 330 410 -7 562 306 38 16 chr3 991211 991397 -226533181 - MIR SINE MIR -69 193 4 1687 198 18 3 chr3 991850 992189 -226532389 - MER2 DNA MER2_type 0 344 1 2102 141 3 0 chr3 992189 992487 -226532091 - AluSx SINE Alu -13 299 1 218 281 83 0 chr3 993463 993559 -226531019 + MIR SINE MIR 110 213 -49 469 113 0 0 chr3 993685 993747 -226530831 + AluSg/x SINE Alu 217 278 -34 210 336 97 9 chr3 994125 994238 -226530340 + L2 LINE L2 3190 3312 -1 1612 162 0 35 chr3 995582 995866 -226528712 + AluJo SINE Alu 6 279 -33 22 0 0 0 chr3 998452 998474 -226526104 + AT_rich Low_complexity Low_complexity 1 22 0 592 271 52 29 chr3 998721 998931 -226525647 + LTR33 LTR ERVL 6 220 -301 1366 273 112 12 chr3 999023 999532 -226525046 - MLT1G1 LTR MaLR 0 595 36 274 270 11 11 chr3 999604 999693 -226524885 + LTR33 LTR ERVL 433 521 0 1058 240 78 18 chr3 1000768 1001152 -226523426 - LTR50 LTR ERVL -3 792 386 255 211 42 0 chr3 1001283 1001354 -226523224 + (TCTA)n Simple_repeat Simple_repeat 1 74 0 332 326 0 36 chr3 1001558 1001696 -226522882 - MIR SINE MIR -12 250 118 266 217 42 192 chr3 1001808 1001928 -226522650 - MER91A DNA MER1_type -5 191 90 621 339 12 0 chr3 1001935 1002100 -226522478 - MER91A DNA MER1_type -28 168 2 1064 244 94 77 chr3 1002250 1002656 -226521922 - MLT1F LTR MaLR -3 539 123 2161 109 0 32 chr3 1002656 1002967 -226521611 - AluSg SINE Alu -9 301 1 1064 244 94 77 chr3 1002967 1003015 -226521563 - MLT1F LTR MaLR -419 123 77 21 0 0 0 chr3 1003208 1003229 -226521349 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr3 1003852 1003873 -226520705 + AT_rich Low_complexity Low_complexity 1 21 0 300 91 0 0 chr3 1005388 1005432 -226519146 + (TTTA)n Simple_repeat Simple_repeat 1 44 0 334 274 37 44 chr3 1005463 1005598 -226518980 + MER117 DNA MER1_type 64 197 0 2002 153 132 5 chr3 1005626 1006004 -226518574 - MSTA LTR MaLR -1 427 2 228 359 11 22 chr3 1006066 1006158 -226518420 + MER5B DNA MER1_type 88 178 0 22 0 0 0 chr3 1006184 1006206 -226518372 + AT_rich Low_complexity Low_complexity 1 22 0 749 129 0 0 chr3 1006209 1006325 -226518253 - L1MA2 LINE L1 -9 6295 6180 750 165 8 0 chr3 1006890 1007011 -226517567 - FLAM_C SINE Alu -11 122 1 357 93 0 0 chr3 1007029 1007083 -226517495 + (TG)n Simple_repeat Simple_repeat 1 54 0 204 308 0 0 chr3 1007120 1007172 -226517406 + CT-rich Low_complexity Low_complexity 3 54 0 207 69 0 0 chr3 1007174 1007203 -226517375 + (CA)n Simple_repeat Simple_repeat 1 29 0 2158 169 54 7 chr3 1007938 1008346 -226516232 + MSTA LTR MaLR 1 427 -1 6375 186 132 9 chr3 1008351 1009754 -226514824 + MSTA-int LTR MaLR 5 1580 0 2137 152 53 22 chr3 1009754 1010129 -226514449 + MSTA LTR MaLR 1 392 -36 2003 131 0 29 chr3 1010129 1010443 -226514135 - AluSg SINE Alu -5 305 1 2137 152 53 22 chr3 1010443 1010482 -226514096 + MSTA LTR MaLR 392 428 0 1497 182 7 107 chr3 1010482 1010895 -226513683 - MLT1B LTR MaLR -16 374 3 2811 207 23 58 chr3 1011076 1011824 -226512754 - MER72 LTR ERV1 0 722 1 237 250 25 0 chr3 1011867 1011947 -226512631 - HsTC2 DNA Tc2 -2 1896 1815 329 335 30 6 chr3 1012094 1012261 -226512317 + L1MEd LINE L1 447 617 -5502 946 236 38 5 chr3 1012384 1012596 -226511982 + MER58A DNA MER1_type 6 224 0 573 278 25 6 chr3 1012601 1012763 -226511815 - MIR SINE MIR -56 206 42 243 87 87 22 chr3 1012818 1012864 -226511714 + L2 LINE L2 3265 3313 0 264 250 0 42 chr3 1012878 1012950 -226511628 - MIR SINE MIR -176 86 18 2331 64 0 32 chr3 1013412 1013725 -226510853 - AluY SINE Alu -8 303 1 351 206 14 14 chr3 1013933 1014006 -226510572 - MIR SINE MIR -188 74 2 282 369 27 0 chr3 1014455 1014604 -226509974 + L2 LINE L2 2053 2205 -1109 440 295 7 40 chr3 1014953 1015102 -226509476 - MER5B DNA MER1_type -34 144 1 592 199 46 8 chr3 1015528 1015659 -226508919 - MER20 DNA MER1_type -21 198 63 495 197 120 0 chr3 1015659 1015776 -226508802 + FLAM_A SINE Alu 11 141 -1 319 278 139 56 chr3 1015965 1016309 -226508269 + MLT1H LTR MaLR 108 491 -58 7267 121 9 10 chr3 1016309 1018211 -226506367 + L1PA8A LINE L1 4220 6129 -2 319 278 139 56 chr3 1018211 1018262 -226506316 + MLT1H LTR MaLR 491 536 -13 766 255 91 26 chr3 1018488 1018719 -226505859 - MIR SINE MIR -14 248 3 1174 203 28 46 chr3 1020124 1020450 -226504128 + MER33 DNA MER1_type 5 324 0 1028 178 26 4 chr3 1020652 1020916 -226503662 + AluSx SINE Alu 1 270 -42 286 161 69 0 chr3 1020918 1021005 -226503573 + AluSg/x SINE Alu 176 268 -32 286 161 69 0 chr3 1021007 1021094 -226503484 + AluSg/x SINE Alu 176 268 -32 290 149 69 0 chr3 1021096 1021183 -226503395 + AluSg/x SINE Alu 176 268 -32 340 138 69 0 chr3 1021185 1021272 -226503306 + AluSg/x SINE Alu 176 268 -32 290 149 69 0 chr3 1021274 1021361 -226503217 + AluSg/x SINE Alu 178 270 -32 329 138 69 0 chr3 1021363 1021450 -226503128 + AluSg/x SINE Alu 176 268 -32 290 149 69 0 chr3 1021452 1021539 -226503039 + AluSg/x SINE Alu 176 268 -32 329 149 64 0 chr3 1021541 1021635 -226502943 + AluSg/x SINE Alu 176 275 -25 23 0 0 0 chr3 1021654 1021677 -226502901 + GC_rich Low_complexity Low_complexity 1 23 0 356 288 83 51 chr3 1021854 1022093 -226502485 - MIR SINE MIR -6 256 8 523 320 115 4 chr3 1022746 1022980 -226501598 - MIR SINE MIR -2 260 1 2158 91 0 10 chr3 1023752 1024061 -226500517 - L1PA13 LINE L1 -2 6161 5856 319 247 213 20 chr3 1024612 1024762 -226499816 - MER5A DNA MER1_type 0 189 11 1139 330 52 7 chr3 1024792 1025379 -226499199 + L2 LINE L2 2459 3070 -243 705 270 107 67 chr3 1025381 1025966 -226498612 - MLT1G1 LTR MaLR 0 595 1 384 247 190 17 chr3 1025987 1026161 -226498417 + L2 LINE L2 3106 3309 -4 186 297 0 16 chr3 1026226 1026290 -226498288 + MIR SINE MIR 187 249 -13 403 267 0 0 chr3 1026578 1026668 -226497910 + MIR SINE MIR 101 190 -72 2049 181 8 3 chr3 1026717 1027088 -226497490 + MER93b LTR ERV1 1 373 0 213 160 217 19 chr3 1027524 1027630 -226496948 + MIR SINE MIR 125 251 -11 1530 157 91 49 chr3 1028019 1028369 -226496209 - MLT1A1 LTR MaLR 0 365 1 450 125 0 0 chr3 1029168 1029265 -226495313 + AluS SINE Alu 220 316 0 993 185 29 0 chr3 1029759 1029964 -226494614 + MER2 DNA MER2_type 1 211 -134 407 284 107 57 chr3 1031020 1031405 -226493173 + MLT1J1 LTR MaLR 1 417 -29 302 273 27 55 chr3 1031454 1031564 -226493014 - MIR SINE MIR -31 231 125 720 233 57 5 chr3 1032722 1032915 -226491663 - MER3 DNA MER1_type -2 207 5 1094 204 33 49 chr3 1032927 1033199 -226491379 + MER33 DNA MER1_type 1 269 -2316 2001 148 0 0 chr3 1033199 1033497 -226491081 - AluSx SINE Alu -14 298 1 1094 204 33 49 chr3 1033497 1033553 -226491025 + MER33 DNA MER1_type 269 324 0 1173 275 88 10 chr3 1033589 1033975 -226490603 - LTR65 LTR ERV1 -29 640 225 232 280 56 19 chr3 1034443 1034550 -226490028 + L2 LINE L2 3201 3311 -2 682 262 27 22 chr3 1035569 1035752 -226488826 - MER5A DNA MER1_type -3 186 3 307 237 237 0 chr3 1036012 1036105 -226488473 - L2 LINE L2 0 3313 3199 819 268 107 53 chr3 1036120 1036643 -226487935 - MLT1H1 LTR MaLR -2 553 3 699 250 109 0 chr3 1036880 1037064 -226487514 - MIR SINE MIR -1 261 58 29 70 0 0 chr3 1039217 1039274 -226485304 + AT_rich Low_complexity Low_complexity 1 57 0 180 152 0 0 chr3 1039338 1039371 -226485207 + (TAA)n Simple_repeat Simple_repeat 3 35 0 305 289 11 0 chr3 1039493 1039583 -226484995 - L1MC4 LINE L1 -1339 6703 6613 402 243 0 18 chr3 1089854 1089973 -226434605 - MER69 DNA AcHobo -57 2469 8 202 322 52 26 chr3 1089982 1090097 -226434481 - MIR3 SINE MIR -54 154 37 554 189 71 53 chr3 1090122 1090403 -226434175 + pTR5 LTR ERV1 743 1028 -1410 1768 108 7 54 chr3 1090482 1090778 -226433800 + LTR12 LTR ERV1 1 282 -432 257 274 0 0 chr3 1090780 1090853 -226433725 + LTR30 LTR ERV1 552 624 -98 700 179 14 4 chr3 1090853 1091013 -226433565 + pTR5 LTR ERV1 49 316 -2122 535 136 0 5 chr3 1091013 1091113 -226433465 - L1M3 LINE L1 -352 5816 5720 621 139 32 9 chr3 1091126 1091232 -226433346 + LTR12 LTR ERV1 410 651 -63 6743 147 46 2 chr3 1091665 1092384 -226432194 + Tigger3b DNA MER2_type 1 794 -2234 2127 124 3 0 chr3 1092384 1092682 -226431896 - AluSx SINE Alu -13 299 1 6743 147 46 2 chr3 1092682 1093141 -226431437 + Tigger3b DNA MER2_type 794 1231 0 21 0 0 0 chr3 1093141 1093162 -226431416 + AT_rich Low_complexity Low_complexity 1 21 0 759 247 70 29 chr3 1093274 1093599 -226430979 - LTR33A LTR ERVL 0 523 149 265 343 102 0 chr3 1093662 1093799 -226430779 + MARNA DNA Mariner 70 220 -366 234 336 58 19 chr3 1094148 1094252 -226430326 - MIR SINE MIR -8 254 147 1553 186 16 19 chr3 1094257 1094568 -226430010 - AluJb SINE Alu -2 310 1 588 21 105 0 chr3 1094610 1094753 -226429825 + (TA)n Simple_repeat Simple_repeat 2 159 0 231 271 104 0 chr3 1094947 1095043 -226429535 + L1ME3A LINE L1 6035 6140 -30 24 0 0 0 chr3 1095178 1095202 -226429376 + AT_rich Low_complexity Low_complexity 1 24 0 242 273 0 0 chr3 1095659 1095714 -226428864 + L2 LINE L2 3257 3311 -2 2144 105 3 3 chr3 1096751 1097047 -226427531 + AluSc SINE Alu 1 296 -13 22579 43 5 4 chr3 1097382 1100825 -226423753 - L1PA5 LINE L1 -140 6014 2570 8688 91 11 12 chr3 1101441 1101777 -226422801 - L1P3 LINE L1 -337 5817 5482 2336 102 7 0 chr3 1101777 1102082 -226422496 - AluSg SINE Alu -3 307 1 8688 91 11 12 chr3 1102082 1103452 -226421126 - L1P3 LINE L1 -672 5482 4110 362 251 117 64 chr3 1105019 1105190 -226419388 + L3 LINE CR1 1077 1256 -321 279 0 0 0 chr3 1105406 1105437 -226419141 + (CA)n Simple_repeat Simple_repeat 2 32 0 189 336 133 8 chr3 1105854 1105982 -226418596 + L2 LINE L2 3170 3313 0 239 203 29 14 chr3 1106000 1106069 -226418509 + GA-rich Low_complexity Low_complexity 3 72 0 313 318 16 8 chr3 1106206 1106335 -226418243 - MIR SINE MIR -10 252 123 239 202 0 43 chr3 1109058 1109152 -226415426 + CT-rich Low_complexity Low_complexity 4 93 0 2056 115 7 3 chr3 1109378 1109674 -226414904 + AluSq SINE Alu 1 297 -16 315 195 131 22 chr3 1110463 1110638 -226413940 + L1M4 LINE L1 5237 5426 -743 6120 214 48 16 chr3 1110667 1111421 -226413157 - L1MB3 LINE L1 -3 6416 5688 2754 88 3 0 chr3 1111421 1111784 -226412794 - THE1B LTR MaLR 0 364 1 6120 214 48 16 chr3 1111784 1113456 -226411122 - L1MB3 LINE L1 -731 5688 3909 4666 179 55 50 chr3 1113450 1114240 -226410338 - L1MB3 LINE L1 -5065 1319 535 * 2675 22 0 13 chr3 1114240 1114555 -226410023 + AluYa5 SINE Alu 1 311 0 4666 179 55 50 chr3 1114555 1114735 -226409843 - L1MB3 LINE L1 -5849 535 340 243 0 0 0 chr3 1114735 1114762 -226409816 + (TTG)n Simple_repeat Simple_repeat 2 28 0 4666 179 55 50 chr3 1114762 1114919 -226409659 - L1MB3 LINE L1 -6044 340 185 1873 147 31 0 chr3 1115190 1115476 -226409102 + AluSx SINE Alu 1 295 -17 315 71 0 0 chr3 1115479 1115521 -226409057 + (TAAA)n Simple_repeat Simple_repeat 2 43 0 22 0 0 0 chr3 1116070 1116092 -226408486 + AT_rich Low_complexity Low_complexity 1 22 0 205 277 20 0 chr3 1116092 1116193 -226408385 + (TA)n Simple_repeat Simple_repeat 1 103 0 569 300 94 9 chr3 1116278 1116511 -226408067 + MIR SINE MIR 9 261 -1 355 244 13 0 chr3 1117471 1117549 -226407029 - MER117 DNA MER1_type -45 152 74 884 200 31 20 chr3 1118370 1118565 -226406013 - MER20 DNA MER1_type 0 219 23 228 333 0 0 chr3 1118569 1118629 -226405949 - MER20 DNA MER1_type -159 60 1 224 290 14 0 chr3 1118836 1118905 -226405673 + (TAG)n Simple_repeat Simple_repeat 1 70 0 255 250 0 42 chr3 1118918 1118990 -226405588 - MIR SINE MIR -76 186 118 203 204 19 0 chr3 1119896 1119950 -226404628 + (TA)n Simple_repeat Simple_repeat 1 55 0 336 306 57 0 chr3 1119997 1120121 -226404457 + MIR SINE MIR 100 230 -32 185 400 0 18 chr3 1122627 1122737 -226401841 + MIR3 SINE MIR 92 199 -9 544 209 52 33 chr3 1122918 1123071 -226401507 - MER103 DNA DNA -1 165 10 476 300 81 37 chr3 1123082 1123545 -226401033 + LTR33 LTR ERVL 8 521 0 225 333 11 33 chr3 1123855 1123945 -226400633 - L2 LINE L2 -10 3262 3175 619 315 22 26 chr3 1124017 1124249 -226400329 - MIR SINE MIR -1 261 31 1284 175 0 9 chr3 1124476 1124704 -226399874 + L1PA16 LINE L1 5683 5908 -258 979 182 35 5 chr3 1124805 1125008 -226399570 + L1PA16 LINE L1 5941 6149 -17 37 23 0 0 chr3 1125011 1125055 -226399523 + AT_rich Low_complexity Low_complexity 1 44 0 25 75 0 0 chr3 1126586 1126639 -226397939 + AT_rich Low_complexity Low_complexity 1 53 0 594 99 0 0 chr3 1126855 1126946 -226397632 + (TC)n Simple_repeat Simple_repeat 1 91 0 24 0 0 0 chr3 1127134 1127158 -226397420 + AT_rich Low_complexity Low_complexity 1 24 0 378 0 0 0 chr3 1127181 1127223 -226397355 + (CA)n Simple_repeat Simple_repeat 2 43 0 245 182 0 0 chr3 1127842 1127886 -226396692 - L2 LINE L2 0 3313 3270 238 269 9 46 chr3 1128563 1128671 -226395907 - MER103 DNA DNA -55 111 8 1020 239 31 82 chr3 1129040 1129429 -226395149 - MLT1A2 LTR MaLR -5 369 1 386 283 51 36 chr3 1129768 1129906 -226394672 - L2 LINE L2 0 3272 3133 330 355 106 43 chr3 1131485 1132151 -226392427 + L2 LINE L2 2560 3255 -17 208 239 11 34 chr3 1132153 1132241 -226392337 + (TA)n Simple_repeat Simple_repeat 2 87 0 317 261 0 33 chr3 1132243 1132335 -226392243 - L1MC4 LINE L1 -1340 6702 6614 36 77 0 0 chr3 1132335 1132413 -226392165 + AT_rich Low_complexity Low_complexity 1 78 0 2504 134 41 24 chr3 1132430 1132849 -226391729 + MSTB1 LTR MaLR 7 432 0 2007 110 3 14 chr3 1134372 1134679 -226389899 - AluSx SINE Alu 0 306 3 704 243 14 43 chr3 1135055 1135309 -226389269 + L1MC5 LINE L1 6573 6830 -1007 1426 174 9 0 chr3 1135312 1135536 -226389042 + AluSq SINE Alu 3 228 -85 404 230 101 14 chr3 1135711 1135859 -226388719 + L1MC5 LINE L1 7028 7188 -773 206 32 32 0 chr3 1135983 1136014 -226388564 + (CA)n Simple_repeat Simple_repeat 1 32 0 1006 248 56 55 chr3 1136081 1136173 -226388405 + L1MC5 LINE L1 7287 7377 -584 210 37 0 0 chr3 1136173 1136200 -226388378 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 1006 248 56 55 chr3 1136200 1136471 -226388107 + L1MC5 LINE L1 7377 7646 -315 2284 89 14 0 chr3 1136471 1136763 -226387815 + AluSc SINE Alu 1 296 -13 1006 248 56 55 chr3 1136763 1137036 -226387542 + L1MC5 LINE L1 7646 7925 -36 1755 235 28 11 chr3 1137258 1137717 -226386861 - MLT1C LTR MaLR 0 467 1 273 29 0 0 chr3 1137867 1137901 -226386677 + (CAT)n Simple_repeat Simple_repeat 2 35 0 219 264 31 70 chr3 1138229 1138358 -226386220 + MIR SINE MIR 136 259 -3 25 0 0 0 chr3 1138650 1138675 -226385903 + AT_rich Low_complexity Low_complexity 1 25 0 325 313 223 18 chr3 1138749 1138915 -226385663 + MIR SINE MIR 15 214 -48 201 323 175 21 chr3 1139170 1139359 -226385219 + L2 LINE L2 2831 3048 -224 276 137 0 0 chr3 1139499 1139550 -226385028 + (TGAA)n Simple_repeat Simple_repeat 2 52 0 1786 260 46 8 chr3 1140953 1141538 -226383040 + L1 LINE L1 2273 2879 -3267 2463 152 7 7 chr3 1141538 1141972 -226382606 + L1MB1 LINE L1 5733 6166 -2 1955 131 7 0 chr3 1142036 1142353 -226382225 + AluSx SINE Alu 1 319 0 384 306 58 67 chr3 1144284 1144614 -226379964 + Charlie8 DNA MER1_type 211 537 -1880 354 294 108 37 chr3 1144895 1145134 -226379444 - MIR SINE MIR -3 259 6 505 222 0 0 chr3 1146139 1146229 -226378349 + MER45A DNA AcHobo 89 178 0 219 367 33 22 chr3 1146229 1146319 -226378259 + MER91A DNA MER1_type 103 193 -3 222 0 79 0 chr3 1149221 1149259 -226375319 + (TA)n Simple_repeat Simple_repeat 1 41 0 196 411 78 17 chr3 1149387 1149567 -226375011 + L2 LINE L2 2553 2743 -571 183 222 0 0 chr3 1149567 1149612 -226374966 + (TA)n Simple_repeat Simple_repeat 1 45 0 22 0 0 0 chr3 1149748 1149770 -226374808 + AT_rich Low_complexity Low_complexity 1 22 0 321 310 159 31 chr3 1149885 1150111 -226374467 + MIR SINE MIR 5 259 -3 1737 168 3 7 chr3 1150371 1150662 -226373916 - AluJb SINE Alu -16 296 7 265 301 12 0 chr3 1151483 1151566 -226373012 - L1MC4 LINE L1 -1340 6702 6619 1076 233 166 14 chr3 1151568 1151912 -226372666 + MSTD LTR MaLR 1 396 0 6554 239 62 20 chr3 1151918 1153578 -226371000 + MSTD-int LTR MaLR 6 1735 0 717 194 70 47 chr3 1153578 1153882 -226370696 + MSTD LTR MaLR 1 311 -54 1676 145 11 0 chr3 1153882 1154151 -226370427 + L1PA16 LINE L1 5886 6157 -9 245 238 0 16 chr3 1154178 1154241 -226370337 + MSTD LTR MaLR 304 365 0 674 236 72 24 chr3 1154817 1155025 -226369553 - MER20 DNA MER1_type -1 218 1 297 0 0 0 chr3 1156382 1156415 -226368163 + (TG)n Simple_repeat Simple_repeat 2 34 0 285 310 9 9 chr3 1157672 1157785 -226366793 + MLT1L LTR MaLR 503 615 0 400 182 10 10 chr3 1159743 1159842 -226364736 + CT-rich Low_complexity Low_complexity 2 100 0 446 181 14 199 chr3 1159959 1160251 -226364327 + LTR38B LTR ERV1 1 238 -372 365 219 35 84 chr3 1160380 1160658 -226363920 + LTR38B LTR ERV1 291 598 0 21 36 0 0 chr3 1161403 1161431 -226363147 + AT_rich Low_complexity Low_complexity 1 28 0 309 360 33 93 chr3 1162348 1162681 -226361897 + L2 LINE L2 2960 3272 0 249 250 104 0 chr3 1163047 1163143 -226361435 + MLT1I LTR MaLR 42 147 -262 390 42 0 0 chr3 1164529 1164577 -226360001 + (TG)n Simple_repeat Simple_repeat 1 48 0 1636 259 75 19 chr3 1164662 1165194 -226359384 + MLT1F1 LTR MaLR 3 564 -3 232 241 96 24 chr3 1165207 1165290 -226359288 - MIR SINE MIR -57 205 117 304 320 109 57 chr3 1165336 1165814 -226358764 - MLT1J LTR MaLR -6 505 3 287 324 150 19 chr3 1166938 1167151 -226357427 + HAL1 LINE L1 1684 1924 -583 287 240 58 58 chr3 1167464 1167618 -226356960 + HAL1b LINE L1 746 899 -449 274 328 44 59 chr3 1167766 1167901 -226356677 + L2 LINE L2 2880 3015 -298 1389 41 6 0 chr3 1167901 1168070 -226356508 - L1PA3 LINE L1 -1 6154 5985 274 328 44 59 chr3 1168070 1168275 -226356303 + L2 LINE L2 3015 3215 -98 24 0 0 0 chr3 1168328 1168352 -226356226 + AT_rich Low_complexity Low_complexity 1 24 0 1899 145 92 3 chr3 1168381 1168739 -226355839 + MLT1B LTR MaLR 1 390 0 222 37 0 0 chr3 1168851 1168878 -226355700 + (A)n Simple_repeat Simple_repeat 1 27 0 22 0 0 0 chr3 1169776 1169798 -226354780 + AT_rich Low_complexity Low_complexity 1 22 0 2484 144 64 7 chr3 1170040 1170476 -226354102 + LOR1b LTR ERV1 1 461 0 362 368 123 19 chr3 1170682 1171098 -226353480 + L2 LINE L2 2264 2722 -592 209 125 0 42 chr3 1171120 1171168 -226353410 + (TATG)n Simple_repeat Simple_repeat 3 48 0 229 342 26 0 chr3 1172048 1172124 -226352454 + L2 LINE L2 2993 3070 -202 225 341 49 0 chr3 1172238 1172320 -226352258 + L2 LINE L2 3227 3312 -1 364 230 34 32 chr3 1172416 1172524 -226352054 - MLT1H LTR MaLR 0 549 433 622 240 27 68 chr3 1172616 1172837 -226351741 - MLT1H LTR MaLR -243 306 95 1712 227 55 49 chr3 1174100 1174593 -226349985 + MLT1D LTR MaLR 5 500 -5 22 35 0 0 chr3 1174650 1174679 -226349899 + AT_rich Low_complexity Low_complexity 1 29 0 551 183 24 0 chr3 1174729 1174855 -226349723 - L1MC4 LINE L1 0 8042 7914 282 263 13 13 chr3 1175014 1175090 -226349488 - MER5C DNA MER1_type -248 76 1 953 112 149 0 chr3 1175127 1175288 -226349290 - MSTA LTR MaLR 0 428 244 424 167 42 0 chr3 1175283 1175355 -226349223 - MSTA LTR MaLR -353 75 1 * 232 309 85 0 chr3 1175483 1175577 -226349001 + L2 LINE L2 3200 3301 -12 2256 118 3 0 chr3 1177594 1177900 -226346678 - AluSq SINE Alu -6 307 1 513 280 60 30 chr3 1178410 1178642 -226345936 - MIR SINE MIR -8 254 16 183 250 0 0 chr3 1179494 1179530 -226345048 + MIR SINE MIR 226 261 -1 481 252 109 7 chr3 1180052 1180199 -226344379 + MIR SINE MIR 15 176 -86 241 296 0 37 chr3 1180703 1180784 -226343794 + MIR SINE MIR 180 257 -5 206 241 0 0 chr3 1180810 1180864 -226343714 + (TA)n Simple_repeat Simple_repeat 2 55 0 2233 77 0 10 chr3 1181466 1181786 -226342792 - AluY SINE Alu 0 311 1 26 30 0 0 chr3 1182025 1182058 -226342520 + AT_rich Low_complexity Low_complexity 1 33 0 345 47 0 0 chr3 1182199 1182242 -226342336 + (TCTG)n Simple_repeat Simple_repeat 2 44 0 23 33 0 0 chr3 1182413 1182443 -226342135 + AT_rich Low_complexity Low_complexity 1 30 0 17784 43 5 3 chr3 1183435 1185664 -226338914 - L1P LINE L1 -3386 2760 529 24 0 0 0 chr3 1185836 1185860 -226338718 + AT_rich Low_complexity Low_complexity 1 24 0 199 273 0 18 chr3 1187603 1187658 -226336920 - L2 LINE L2 -9 3263 3210 2186 92 0 32 chr3 1188632 1188947 -226335631 - AluSx SINE Alu -7 305 1 848 105 7 14 chr3 1189874 1190017 -226334561 - L1PA13 LINE L1 0 6163 6022 388 352 54 37 chr3 1191084 1191436 -226333142 + L2 LINE L2 2312 2669 -645 2899 236 50 4 chr3 1191532 1192248 -226332330 + L1MD2 LINE L1 5390 6138 -221 271 260 39 0 chr3 1192268 1192345 -226332233 + L1MD3 LINE L1 7786 7865 -130 435 332 143 28 chr3 1193682 1193984 -226330594 + L2 LINE L2 2737 3070 -243 742 254 55 15 chr3 1193995 1194196 -226330382 - MER63A DNA MER1_type -1 209 1 307 313 0 0 chr3 1194322 1194402 -226330176 + L2 LINE L2 3234 3313 0 247 229 184 23 chr3 1196736 1196955 -226327623 - Charlie7 DNA MER1_type 0 2612 6 180 152 0 0 chr3 1197388 1197421 -226327157 + (TTA)n Simple_repeat Simple_repeat 2 34 0 872 283 14 0 chr3 1197481 1197700 -226326878 - MER58A DNA MER1_type 0 224 3 1735 178 23 26 chr3 1197779 1198127 -226326451 + MER7A DNA MER2_type 1 345 -1 1255 190 107 33 chr3 1198270 1198607 -226325971 + MLT1A1 LTR MaLR 4 365 0 46 54 0 0 chr3 1199185 1199259 -226325319 + AT_rich Low_complexity Low_complexity 1 74 0 449 350 31 20 chr3 1199841 1200095 -226324483 + MLT1H1 LTR MaLR 1 257 -298 22 80 0 0 chr3 1200460 1200510 -226324068 + AT_rich Low_complexity Low_complexity 1 50 0 359 219 109 8 chr3 1201527 1201655 -226322923 + MER103 DNA DNA 11 151 -15 221 376 12 0 chr3 1201689 1201774 -226322804 + L2 LINE L2 3224 3309 -4 428 341 18 66 chr3 1202275 1202501 -226322077 - MIR SINE MIR -30 232 18 1128 275 28 19 chr3 1202986 1203346 -226321232 - L2 LINE L2 -9 3304 2942 700 287 37 0 chr3 1203447 1203635 -226320943 - MER58A DNA MER1_type 0 224 30 217 267 0 0 chr3 1203648 1203693 -226320885 - L2 LINE L2 -514 2800 2756 652 286 123 62 chr3 1203701 1204215 -226320363 + MLT1H1 LTR MaLR 4 548 -19 1634 306 114 13 chr3 1204223 1204917 -226319661 - L2 LINE L2 -548 2766 2003 2137 150 28 11 chr3 1205146 1205507 -226319071 + THE1C LTR MaLR 9 375 0 21 0 0 0 chr3 1206112 1206133 -226318445 + AT_rich Low_complexity Low_complexity 1 21 0 557 204 55 0 chr3 1206593 1206774 -226317804 - L1MCa LINE L1 -2889 3537 3347 6291 157 7 26 chr3 1206780 1209001 -226315577 - L1PB1 LINE L1 0 6151 3974 694 221 21 5 chr3 1208976 1209166 -226315412 - L1MCa LINE L1 -3092 3334 3142 * 2300 202 48 20 chr3 1209180 1210029 -226314549 - L1MCa LINE L1 -3495 2931 2033 465 120 100 0 chr3 1210124 1210224 -226314354 - L1MCa LINE L1 -4384 2042 1933 325 393 34 11 chr3 1210250 1210428 -226314150 + L3 LINE CR1 1331 1512 -65 232 247 82 0 chr3 1212419 1212504 -226312074 + L1ME4a LINE L1 5844 5935 -186 21 36 0 0 chr3 1214329 1214357 -226310221 + AT_rich Low_complexity Low_complexity 1 28 0 318 319 86 17 chr3 1216541 1216773 -226307805 - L1MC/D LINE L1 -2036 5772 5525 187 318 0 0 chr3 1216796 1216840 -226307738 - MIR SINE MIR -203 59 16 196 287 103 46 chr3 1216964 1217051 -226307527 + MIR SINE MIR 11 102 -160 2051 124 89 3 chr3 1217070 1217408 -226307170 - THE1C LTR MaLR -8 367 1 237 67 0 0 chr3 1217896 1217926 -226306652 + LTR6A LTR ERV1 73 102 -462 22 0 0 0 chr3 1218825 1218847 -226305731 + AT_rich Low_complexity Low_complexity 1 22 0 1800 158 51 67 chr3 1219033 1219424 -226305154 + MLT2D LTR ERVL 1 534 -20 257 196 0 0 chr3 1219449 1219500 -226305078 + MLT2C1 LTR ERVL 347 397 0 2420 54 3 0 chr3 1219660 1219956 -226304622 + AluY SINE Alu 1 297 -14 2911 76 76 2 chr3 1220122 1220544 -226304034 + MLT2A2 LTR ERVL 1 453 0 474 60 90 0 chr3 1220547 1220681 -226303897 + (TA)n Simple_repeat Simple_repeat 2 147 0 1201 179 35 16 chr3 1221023 1221280 -226303298 + L1PA7 LINE L1 5891 6152 -2 1460 245 78 21 chr3 1221824 1222261 -226302317 + MLT1C LTR MaLR 6 467 0 766 235 131 40 chr3 1222507 1222928 -226301650 + LTR37B LTR ERV1 1 459 -9 729 227 0 6 chr3 1222942 1223105 -226301473 - FRAM SINE Alu -23 153 1 205 97 16 81 chr3 1223487 1223549 -226301029 + (TTATA)n Simple_repeat Simple_repeat 1 58 0 207 69 0 0 chr3 1223761 1223790 -226300788 + (TG)n Simple_repeat Simple_repeat 2 30 0 209 297 193 28 chr3 1223901 1224046 -226300532 - MIR SINE MIR -73 189 21 349 303 9 9 chr3 1224197 1224306 -226300272 + MIR3 SINE MIR 54 162 -46 1279 218 49 35 chr3 1224404 1224831 -226299747 - HsTC2 DNA Tc2 -11 1887 1279 351 0 0 0 chr3 1225854 1225893 -226298685 + (CA)n Simple_repeat Simple_repeat 2 40 0 258 32 0 0 chr3 1225892 1225923 -226298655 + (GA)n Simple_repeat Simple_repeat 2 32 0 * 927 233 43 9 chr3 1225966 1226198 -226298380 + MIR SINE MIR 1 240 -22 929 165 19 19 chr3 1226233 1226445 -226298133 - L1 LINE L1 -823 5323 5112 4760 169 25 6 chr3 1226450 1227348 -226297230 + L1MA8 LINE L1 5364 6278 -13 273 98 0 0 chr3 1227361 1227402 -226297176 + (CA)n Simple_repeat Simple_repeat 2 42 0 317 226 108 0 chr3 1228501 1228594 -226295984 + MER103 DNA DNA 57 159 -7 272 292 124 0 chr3 1229254 1229367 -226295211 + MER117 DNA MER1_type 6 132 -65 278 323 46 8 chr3 1229432 1229559 -226295019 - MIR SINE MIR -48 160 29 2343 83 0 0 chr3 1229582 1229883 -226294695 + AluSc SINE Alu 3 303 -6 2397 71 0 3 chr3 1230509 1230819 -226293759 + AluY SINE Alu 1 309 -2 228 315 77 49 chr3 1231123 1231266 -226293312 - MIR3 SINE MIR -4 204 58 685 259 129 9 chr3 1232707 1232939 -226291639 + MIR SINE MIR 2 261 -1 639 293 122 39 chr3 1234809 1235144 -226289434 - MLT1I LTR MaLR -5 404 42 234 204 0 19 chr3 1235246 1235300 -226289278 + (CA)n Simple_repeat Simple_repeat 2 54 0 276 100 0 0 chr3 1235300 1235340 -226289238 + (CCA)n Simple_repeat Simple_repeat 2 41 0 2116 249 42 41 chr3 1235552 1236376 -226288202 + L1MD2 LINE L1 3750 4574 -1572 893 216 0 39 chr3 1236399 1236631 -226287947 - AluJo SINE Alu -6 306 84 757 158 8 0 chr3 1236734 1236854 -226287724 - FLAM_C SINE Alu -22 121 1 331 277 52 78 chr3 1236892 1237123 -226287455 + L1MD2 LINE L1 4579 4803 -1343 24 85 0 0 chr3 1237140 1237199 -226287379 + AT_rich Low_complexity Low_complexity 1 59 0 3580 238 44 32 chr3 1237204 1238654 -226285924 + L1MD2 LINE L1 4793 6355 -4 * 5291 183 28 13 chr3 1238651 1238782 -226285796 + L1MA8 LINE L1 4195 4323 -1968 1910 132 3 56 chr3 1238782 1239101 -226285477 - AluSc SINE Alu -5 304 3 5291 183 28 13 chr3 1239101 1239843 -226284735 + L1MA8 LINE L1 4323 5052 -1239 2184 165 30 37 chr3 1239843 1240303 -226284275 + MSTB2 LTR MaLR 1 457 0 5291 183 28 13 chr3 1240303 1241498 -226283080 + L1MA8 LINE L1 5052 6291 0 22 0 0 0 chr3 1242185 1242207 -226282371 + AT_rich Low_complexity Low_complexity 1 22 0 200 327 0 0 chr3 1243448 1243503 -226281075 - MIR SINE MIR -150 112 58 366 303 53 53 chr3 1244541 1244729 -226279849 + L2 LINE L2 2584 2771 -543 3923 150 34 4 chr3 1245001 1245714 -226278864 - L1MA4 LINE L1 -6 6294 5561 322 287 60 47 chr3 1246173 1246323 -226278255 + L2 LINE L2 3162 3313 0 423 265 61 30 chr3 1246430 1246562 -226278016 - LTR16C LTR ERVL 0 491 356 1706 112 4 7 chr3 1247292 1247569 -226277009 - L1MA5A LINE L1 -1 6296 6021 187 296 37 19 chr3 1247893 1247947 -226276631 + L2 LINE L2 3134 3188 -84 354 322 22 0 chr3 1249021 1249111 -226275467 + MER5A DNA MER1_type 10 101 -88 525 366 50 9 chr3 1249198 1249515 -226275063 + MLT1J LTR MaLR 3 332 -179 25 0 0 0 chr3 1251374 1251399 -226273179 + AT_rich Low_complexity Low_complexity 1 25 0 31 0 0 24 chr3 1251878 1251907 -226272671 + AT_rich Low_complexity Low_complexity 1 30 -11 1184 15 0 0 chr3 1251907 1252044 -226272534 - L1PA4 LINE L1 -8 6147 6011 31 0 0 24 chr3 1252044 1252056 -226272522 + AT_rich Low_complexity Low_complexity 30 41 0 239 325 38 12 chr3 1252734 1252814 -226271764 + MIR SINE MIR 34 115 -147 285 29 0 0 chr3 1252852 1252886 -226271692 + (GA)n Simple_repeat Simple_repeat 1 34 0 2121 305 43 46 chr3 1252894 1254639 -226269939 - L1M4 LINE L1 -888 5258 3520 608 241 91 37 chr3 1254978 1255219 -226269359 + Charlie5 DNA MER1_type 2234 2487 -125 246 301 0 0 chr3 1255245 1255318 -226269260 - L1M4 LINE L1 -2056 4090 4018 721 359 31 29 chr3 1255332 1255912 -226268666 + L1PA13 LINE L1 788 1368 -6206 471 300 52 14 chr3 1255896 1256170 -226268408 + L1PA13 LINE L1 2069 2303 -5271 * 4287 231 35 18 chr3 1256408 1257625 -226266953 + L1PA13 LINE L1 2188 3439 -4145 2076 143 0 0 chr3 1257625 1257926 -226266652 + AluSx SINE Alu 3 303 -9 4287 231 35 18 chr3 1257926 1258109 -226266469 + L1PA13 LINE L1 3439 3617 -3967 24 0 0 0 chr3 1258309 1258333 -226266245 + AT_rich Low_complexity Low_complexity 1 24 0 2896 252 50 14 chr3 1258471 1259484 -226265094 + L1PA13 LINE L1 3599 4648 -2936 * 16282 191 32 37 chr3 1259477 1263162 -226261416 - L1PB1 LINE L1 0 6867 3167 7107 6 0 0 chr3 1263162 1263956 -226260622 + L1PA2 LINE L1 5344 6138 -17 16282 191 32 37 chr3 1263956 1266324 -226258254 - L1PB1 LINE L1 -3700 3167 993 273 29 0 0 chr3 1266324 1266358 -226258220 + (TTTG)n Simple_repeat Simple_repeat 4 37 0 16282 191 32 37 chr3 1266358 1267346 -226257232 - L1PB1 LINE L1 -5874 993 2 246 356 130 14 chr3 1267402 1267618 -226256960 + L2 LINE L2 2830 3070 -202 271 311 75 112 chr3 1268214 1268784 -226255794 + LTR67 LTR ERVL 4 552 -5 445 305 41 35 chr3 1269031 1269228 -226255350 + MIR SINE MIR 65 262 0 230 363 50 45 chr3 1270060 1270239 -226254339 - L2 LINE L2 -522 2792 2613 22 0 0 0 chr3 1270628 1270650 -226253928 + AT_rich Low_complexity Low_complexity 1 22 0 2303 123 43 6 chr3 1270784 1271135 -226253443 + THE1B LTR MaLR 1 364 0 1345 215 49 89 chr3 1271912 1272438 -226252140 + MLT1D LTR MaLR 1 505 0 2166 109 3 0 chr3 1273905 1274199 -226250379 - AluSx SINE Alu -17 295 1 199 298 229 0 chr3 1274329 1274460 -226250118 - MIR SINE MIR -53 209 49 1039 105 62 0 chr3 1275184 1275346 -226249232 - L1PA16 LINE L1 -16 6150 5979 371 221 171 57 chr3 1275447 1275587 -226248991 - MER5B DNA MER1_type -22 156 1 348 228 38 13 chr3 1275657 1275736 -226248842 - MER94 DNA DNA -53 81 1 319 317 14 62 chr3 1275738 1275883 -226248695 - MER5A DNA MER1_type -24 165 28 4043 189 40 0 chr3 1275900 1276681 -226247897 - L1MC1 LINE L1 0 6333 5522 18728 30 0 0 chr3 1476681 1478954 -226045624 - L1P LINE L1 -840 5306 3034 246 266 31 0 chr3 1480551 1480615 -226043963 - MLT2D LTR ERVL -118 296 231 758 201 85 0 chr3 1484257 1484421 -226040157 - MER5B DNA MER1_type 0 178 1 243 200 50 62 chr3 1484438 1484518 -226040060 - Charlie8 DNA MER1_type 0 2417 2339 359 307 94 40 chr3 1484976 1485178 -226039400 + MIR SINE MIR 49 261 -1 523 233 39 0 chr3 1485580 1485709 -226038869 + MLT1C LTR MaLR 34 167 -300 7086 39 8 3 chr3 1485715 1486764 -226037814 + L1PA4 LINE L1 5139 6155 0 832 241 84 45 chr3 1486764 1487050 -226037528 + MLT1C LTR MaLR 171 467 0 311 183 14 0 chr3 1487574 1487645 -226036933 - L1MDa LINE L1 -4351 2189 2118 2174 203 51 75 chr3 1487749 1488572 -226036006 - L1MDa LINE L1 -4441 2099 1297 2617 255 50 22 chr3 1488587 1489261 -226035317 - L1MDa LINE L1 -5831 709 17 1634 178 3 28 chr3 1490234 1490520 -226034058 - AluJb SINE Alu -31 281 3 1869 179 42 8 chr3 1490849 1491202 -226033376 - MLT1A1 LTR MaLR 0 365 1 1870 142 64 0 chr3 1491408 1491689 -226032889 + AluSx SINE Alu 1 299 -13 24 32 0 0 chr3 1491838 1491869 -226032709 + AT_rich Low_complexity Low_complexity 1 31 0 228 167 0 0 chr3 1491902 1491950 -226032628 + LTR66 LTR ERVL 392 439 -171 264 122 0 0 chr3 1491952 1491993 -226032585 + (TA)n Simple_repeat Simple_repeat 1 41 0 237 164 164 0 chr3 1491995 1492056 -226032522 + MIR SINE MIR 70 140 -122 230 204 0 0 chr3 1492083 1492127 -226032451 + Tigger2 DNA MER2_type 26 69 -2649 * 2416 148 60 7 chr3 1492114 1492534 -226032044 + Tigger2 DNA MER2_type 2271 2712 -6 226 310 0 0 chr3 1492545 1492603 -226031975 + MIR SINE MIR 156 213 -49 2399 67 3 3 chr3 1492786 1493084 -226031494 - AluY SINE Alu -13 298 1 186 43 0 0 chr3 1493201 1493224 -226031354 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 435 239 9 18 chr3 1493644 1493757 -226030821 - MLT1E3 LTR MaLR -459 165 54 228 342 0 26 chr3 1496347 1496423 -226028155 + MIR SINE MIR 20 93 -115 458 296 23 8 chr3 1496523 1496655 -226027923 + MIR SINE MIR 127 260 -2 195 368 0 0 chr3 1496878 1496946 -226027632 + L2 LINE L2 3205 3272 0 418 321 93 19 chr3 1497200 1497362 -226027216 + MIR3 SINE MIR 20 193 -15 323 325 84 19 chr3 1497555 1497709 -226026869 + MIR SINE MIR 22 185 -77 185 339 36 36 chr3 1497899 1498011 -226026567 - L2 LINE L2 -3 3310 3199 28 61 0 0 chr3 1498131 1498180 -226026398 + AT_rich Low_complexity Low_complexity 1 49 0 829 307 107 58 chr3 1498315 1499213 -226025365 - L2 LINE L2 0 3313 2375 672 224 153 10 chr3 1499223 1499419 -226025159 - MER58A DNA MER1_type 0 224 1 1069 324 166 14 chr3 1499423 1500146 -226024432 - L2 LINE L2 -947 2367 1535 285 277 0 32 chr3 1500283 1500377 -226024201 - MER63 DNA MER1_type -312 750 34 299 206 0 0 chr3 1500526 1500589 -226023989 + MLT1E2 LTR MaLR 548 610 -16 733 277 0 21 chr3 1501067 1501255 -226023323 + MIR SINE MIR 2 185 -77 263 297 0 0 chr3 1501749 1501813 -226022765 + MIR SINE MIR 180 243 -19 3157 82 9 24 chr3 1502258 1502709 -226021869 + MLT2A1 LTR ERVL 1 444 0 231 36 0 0 chr3 1502785 1502813 -226021765 + (CA)n Simple_repeat Simple_repeat 1 28 0 192 77 0 0 chr3 1502839 1502865 -226021713 + (CA)n Simple_repeat Simple_repeat 1 26 0 186 301 126 10 chr3 1503789 1503892 -226020686 - L3 LINE CR1 -878 699 585 303 311 120 70 chr3 1504030 1504471 -226020107 + L2 LINE L2 2335 2797 -517 336 317 83 22 chr3 1504720 1504900 -226019678 + L2 LINE L2 3118 3308 -5 279 343 26 82 chr3 1504900 1505168 -226019410 - L3 LINE CR1 -259 1318 1066 282 287 33 16 chr3 1506255 1506377 -226018201 + GA-rich Low_complexity Low_complexity 3 126 0 265 333 61 10 chr3 1506976 1507075 -226017503 - L2 LINE L2 0 3272 3169 * 942 275 83 73 chr3 1507072 1507597 -226016981 - L2 LINE L2 -2 3311 2777 777 118 0 0 chr3 1507624 1507734 -226016844 - MSTB1 LTR MaLR -322 110 1 1343 293 124 15 chr3 1507780 1508448 -226016130 - L2 LINE L2 -629 2685 1945 207 419 26 21 chr3 1508618 1508809 -226015769 - L2 LINE L2 -212 3060 2869 2430 200 34 20 chr3 1509152 1509707 -226014871 + L1MB3 LINE L1 5615 6177 -6 338 260 42 21 chr3 1509864 1509960 -226014618 - MLT1L LTR MaLR -221 394 297 183 250 0 0 chr3 1510142 1510210 -226014368 + C-rich Low_complexity Low_complexity 1 68 0 661 303 31 12 chr3 1510343 1510597 -226013981 + L1PA12 LINE L1 1 259 -7322 6533 235 32 17 chr3 1510609 1513257 -226011321 + L1PA12 LINE L1 1924 4624 -2960 2754 22 0 0 chr3 1513257 1513568 -226011010 + AluYa5 SINE Alu 1 311 0 6533 235 32 17 chr3 1513568 1513743 -226010835 + L1PA12 LINE L1 4624 4795 -2789 632 157 0 17 chr3 1513843 1514015 -226010563 + G-rich Low_complexity Low_complexity 1 169 0 1881 155 0 7 chr3 1514348 1514639 -226009939 - AluSg SINE Alu -19 291 3 26 0 0 0 chr3 1515316 1515342 -226009236 + AT_rich Low_complexity Low_complexity 1 26 0 23 0 0 0 chr3 1516002 1516025 -226008553 + AT_rich Low_complexity Low_complexity 1 23 0 383 327 107 58 chr3 1516470 1517057 -226007521 - L2 LINE L2 0 3313 2705 245 211 47 39 chr3 1517083 1517211 -226007367 + (CATATA)n Simple_repeat Simple_repeat 3 131 0 204 323 31 0 chr3 1517743 1517808 -226006770 + L2 LINE L2 3247 3313 0 453 280 40 13 chr3 1518090 1518240 -226006338 + L2 LINE L2 3154 3307 -6 1315 207 28 69 chr3 1518536 1518898 -226005680 - MER82 DNA MER2_type -305 348 2 206 257 46 9 chr3 1518899 1519008 -226005570 + (TA)n Simple_repeat Simple_repeat 2 114 0 339 25 0 0 chr3 1519246 1519286 -226005292 + (TA)n Simple_repeat Simple_repeat 1 40 0 962 77 0 8 chr3 1520210 1520340 -226004238 + L1PA10 LINE L1 6040 6168 0 228 35 0 0 chr3 1520425 1520454 -226004124 + (CA)n Simple_repeat Simple_repeat 2 30 0 2185 121 3 0 chr3 1520631 1520938 -226003640 + AluSx SINE Alu 1 308 -4 1817 119 159 68 chr3 1521150 1521520 -226003058 - MER4A LTR ERV1 0 664 261 638 121 0 10 chr3 1521520 1521619 -226002959 - MER4A LTR ERV1 -566 98 1 805 172 79 16 chr3 1521619 1521916 -226002662 + LTR54B LTR ERV1 54 405 -105 2396 102 83 137 chr3 1521930 1522507 -226002071 - LTR10A LTR ERV1 -63 546 1 581 150 9 9 chr3 1522507 1522620 -226001958 + LTR54 LTR ERV1 394 506 -4 520 296 51 5 chr3 1524470 1524666 -225999912 + L1ME LINE L1 5466 5670 -500 7295 97 15 2 chr3 1524764 1525837 -225998741 + L1P LINE L1 1850 2936 -3210 26 0 0 0 chr3 1526073 1526099 -225998479 + AT_rich Low_complexity Low_complexity 1 26 0 566 236 45 68 chr3 1526193 1526413 -225998165 + MIR SINE MIR 12 226 -36 2194 127 0 7 chr3 1526413 1526721 -225997857 + AluSx SINE Alu 1 306 -6 22 35 0 0 chr3 1527378 1527407 -225997171 + AT_rich Low_complexity Low_complexity 1 29 0 2189 95 3 0 chr3 1527999 1528293 -225996285 + AluSp SINE Alu 1 295 -18 909 93 0 0 chr3 1528295 1528424 -225996154 + (TA)n Simple_repeat Simple_repeat 2 130 0 1176 185 88 55 chr3 1528573 1528936 -225995642 - MER39 LTR ERV1 -25 682 308 246 242 30 61 chr3 1528909 1529008 -225995570 - LTR48B LTR ERV1 -544 100 5 * 219 302 70 12 chr3 1530293 1530379 -225994199 - L2 LINE L2 -458 2856 2766 2384 93 3 0 chr3 1530876 1531186 -225993392 - AluSp SINE Alu -1 312 2 14732 96 4 16 chr3 1531591 1533765 -225990813 + HERVH LTR ERV1 845 2992 -4721 897 142 20 0 chr3 1533751 1533899 -225990679 + HERVH LTR ERV1 3140 3290 -4423 * 3254 113 6 8 chr3 1533889 1534392 -225990186 + HERVH LTR ERV1 3492 3993 -3720 4406 138 0 1 chr3 1534396 1535057 -225989521 + HERVH LTR ERV1 4490 5149 -2564 1363 113 38 0 chr3 1535058 1535270 -225989308 + HERVH LTR ERV1 5600 5819 -1894 * 2342 103 48 13 chr3 1535268 1535647 -225988931 + HERVH LTR ERV1 7322 7713 0 2794 78 92 5 chr3 1535647 1536059 -225988519 + LTR7 LTR ERV1 1 448 -2 308 247 6 137 chr3 1536097 1536279 -225988299 - L1MEd LINE L1 -4481 1648 1491 268 302 70 43 chr3 1536396 1537016 -225987562 - L1MEd LINE L1 -4618 1511 889 504 205 117 23 chr3 1537027 1537198 -225987380 - MER53 DNA DNA -2 187 1 27 73 0 0 chr3 1537235 1537290 -225987288 + AT_rich Low_complexity Low_complexity 1 55 0 1226 235 88 122 chr3 1537384 1538006 -225986572 + MLT1E1 LTR MaLR 3 603 -51 555 243 108 47 chr3 1539160 1539456 -225985122 + HAL1 LINE L1 1251 1564 -943 573 136 17 8 chr3 1539469 1539587 -225984991 + GA-rich Low_complexity Low_complexity 2 120 0 259 304 38 0 chr3 1540582 1540661 -225983917 - L2 LINE L2 -37 3276 3195 2764 99 0 0 chr3 1541129 1541493 -225983085 + THE1B LTR MaLR 1 364 0 2713 87 3 3 chr3 1542141 1542511 -225982067 + L1PA8 LINE L1 5795 6164 -8 210 37 0 0 chr3 1542790 1542817 -225981761 + (CA)n Simple_repeat Simple_repeat 1 27 0 897 194 0 29 chr3 1544146 1544316 -225980262 - FRAM SINE Alu -12 164 1 3259 197 43 64 chr3 1544343 1544850 -225979728 + L1MC3 LINE L1 6893 7374 -411 1096 204 42 4 chr3 1544850 1545110 -225979468 + L1PB4 LINE L1 5887 6156 0 3259 197 43 64 chr3 1545110 1545494 -225979084 + L1MC3 LINE L1 7374 7765 -20 2456 84 3 0 chr3 1545628 1545937 -225978641 - AluSp SINE Alu -3 310 1 2237 104 3 0 chr3 1548448 1548746 -225975832 + AluY SINE Alu 1 299 -12 278 290 161 0 chr3 1549811 1549904 -225974674 + MIR SINE MIR 52 159 -103 904 237 50 80 chr3 1549908 1550284 -225974294 + MLT1C LTR MaLR 1 365 -102 458 241 0 18 chr3 1550627 1550739 -225973839 + MLT1C LTR MaLR 358 467 0 1048 92 7 0 chr3 1551386 1551528 -225973050 + L1P LINE L1 2 144 -6002 1057 30 0 23 chr3 1551534 1551665 -225972913 + L1P1 LINE L1 5517 5644 -511 2297 90 0 0 chr3 1551666 1551954 -225972624 + AluY SINE Alu 10 297 -14 1770 176 115 16 chr3 1551954 1552449 -225972129 - L1M4c LINE L1 -4334 2048 1374 312 27 0 0 chr3 1552461 1552498 -225972080 + (TG)n Simple_repeat Simple_repeat 2 38 0 1993 172 112 84 chr3 1552900 1553546 -225971032 + MER4A LTR ERV1 1 664 0 1604 186 28 34 chr3 1553735 1554062 -225970516 + MER21B LTR ERV1 1 325 -538 1809 238 49 10 chr3 1554123 1554531 -225970047 + MER21B LTR ERV1 425 848 -15 435 321 93 22 chr3 1555388 1555805 -225968773 + L1ME4a LINE L1 5673 6119 -2 255 152 0 0 chr3 1556689 1556735 -225967843 + A-rich Low_complexity Low_complexity 1 46 0 367 328 15 15 chr3 1556867 1556998 -225967580 - L2 LINE L2 0 3313 3183 1185 231 9 47 chr3 1557588 1557908 -225966670 + L1MD2 LINE L1 6023 6330 -29 23 33 0 0 chr3 1559647 1559677 -225964901 + AT_rich Low_complexity Low_complexity 1 30 0 24 53 0 0 chr3 1559979 1560017 -225964561 + AT_rich Low_complexity Low_complexity 1 38 0 2078 92 7 0 chr3 1560622 1560895 -225963683 + AluSc SINE Alu 2 276 -33 180 0 0 0 chr3 1560937 1560957 -225963621 + (GA)n Simple_repeat Simple_repeat 2 21 0 3576 187 29 22 chr3 1561417 1562826 -225961752 + L1MA9 LINE L1 4642 6176 -136 210 37 0 0 chr3 1562826 1562853 -225961725 + (CA)n Simple_repeat Simple_repeat 2 28 0 3576 187 29 22 chr3 1562853 1562991 -225961587 + L1MA9 LINE L1 6176 6312 0 22 0 0 0 chr3 1564302 1564324 -225960254 + AT_rich Low_complexity Low_complexity 1 22 0 23 54 0 0 chr3 1564682 1564719 -225959859 + AT_rich Low_complexity Low_complexity 1 37 0 803 182 127 0 chr3 1565069 1565216 -225959362 - MSTA LTR MaLR -1 427 260 995 175 11 6 chr3 1565216 1565399 -225959179 - LTR2 LTR ERV1 0 449 266 659 203 1 0 chr3 1565456 1565684 -225958894 - Harlequin LTR ERV1 -1 6895 6699 1457 67 5 10 chr3 1566428 1566636 -225957942 + LTR7 LTR ERV1 242 448 -2 519 272 69 6 chr3 1566715 1566888 -225957690 + MER5A DNA MER1_type 4 187 -2 1027 183 0 0 chr3 1567164 1567333 -225957245 + FRAM SINE Alu 1 169 -7 754 248 96 0 chr3 1567359 1567557 -225957021 + MIR SINE MIR 46 262 0 2091 160 77 15 chr3 1567785 1568186 -225956392 - MSTB LTR MaLR 0 426 1 1648 185 0 43 chr3 1568506 1568830 -225955748 - AluJb SINE Alu 0 312 3 3138 208 64 29 chr3 1569707 1570492 -225954086 + L1MC2 LINE L1 5416 6227 -117 3690 169 51 34 chr3 1570922 1571091 -225953487 - L1MA6 LINE L1 -10 7311 7147 2291 168 20 0 chr3 1571091 1571484 -225953094 - MER57A LTR ERV1 0 403 3 2149 120 3 7 chr3 1571487 1571796 -225952782 + AluSx SINE Alu 3 310 -2 3690 169 51 34 chr3 1571796 1572056 -225952522 - L1MA6 LINE L1 -175 7146 6892 2384 115 16 19 chr3 1572056 1572430 -225952148 + THE1C LTR MaLR 3 375 0 3690 169 51 34 chr3 1572430 1572831 -225951747 - L1MA6 LINE L1 -429 6892 6461 * 10441 230 45 29 chr3 1572822 1573395 -225951183 - L1MA6 LINE L1 -1400 5767 5204 189 0 0 0 chr3 1573395 1573416 -225951162 + (TTTA)n Simple_repeat Simple_repeat 2 22 0 10441 230 45 29 chr3 1573416 1577387 -225947191 - L1MA6 LINE L1 -1963 5204 1472 1497 305 58 53 chr3 1577413 1578055 -225946523 - L1MA6 LINE L1 -6144 1024 1 196 307 51 117 chr3 1578194 1578331 -225946247 + MIR3 SINE MIR 30 157 -51 1115 36 0 0 chr3 1578701 1578838 -225945740 - L1PA4 LINE L1 -3 6152 6016 631 275 13 61 chr3 1579217 1579446 -225945132 - MER20 DNA MER1_type -1 218 1 1152 199 55 65 chr3 1579536 1579952 -225944626 - L1MB8 LINE L1 -9 6169 5758 408 289 79 3 chr3 1580054 1580383 -225944195 - L1MEc LINE L1 -3653 2562 2209 301 311 88 51 chr3 1580394 1580445 -225944133 - L1MEc LINE L1 -4159 2237 2189 7072 59 6 1 chr3 1580445 1581544 -225943034 + L1PA8 LINE L1 5070 6172 0 301 311 88 51 chr3 1581544 1581823 -225942755 - L1MEc LINE L1 -4207 2189 1895 2769 92 92 5 chr3 1581825 1582237 -225942341 + LTR7 LTR ERV1 1 448 -2 4411 87 42 5 chr3 1582239 1582903 -225941675 + HERVH LTR ERV1 1 689 -7024 32 26 0 0 chr3 1584014 1584053 -225940525 + AT_rich Low_complexity Low_complexity 1 39 0 663 295 92 4 chr3 1584165 1584426 -225940152 + MLT1F LTR MaLR 1 284 -258 303 193 45 23 chr3 1584420 1584508 -225940070 + MLT1F LTR MaLR 474 563 -4 * 333 269 0 42 chr3 1584593 1584712 -225939866 + MLT1-int LTR MaLR 437 550 -821 1682 64 0 0 chr3 1584924 1585127 -225939451 - AluY SINE Alu -11 300 98 804 211 36 135 chr3 1585177 1585598 -225938980 - MLT1B LTR MaLR -8 382 4 1605 230 44 80 chr3 1585605 1586469 -225938109 - MLT1C-int LTR MaLR -4 1705 557 1073 164 13 4 chr3 1586453 1586716 -225937862 - MLT1C-int LTR MaLR -988 383 1 * 1133 206 124 79 chr3 1586716 1587158 -225937420 - MLT1C LTR MaLR 0 467 6 27 49 0 0 chr3 1587219 1587260 -225937318 + AT_rich Low_complexity Low_complexity 1 41 0 328 304 14 40 chr3 1587302 1587450 -225937128 + L1ME LINE L1 3682 3825 -2321 246 276 71 8 chr3 1587454 1587581 -225936997 - MLT1J LTR MaLR -3 508 374 270 314 20 52 chr3 1587686 1587839 -225936739 - MLT1J LTR MaLR -312 199 52 304 289 60 24 chr3 1588546 1588712 -225935866 + L1ME LINE L1 4545 4716 -1430 8403 38 2 0 chr3 1588759 1589830 -225934748 - L1PA3 LINE L1 -1782 4364 3292 8660 23 0 0 chr3 1589830 1591618 -225932960 + L1PA3 LINE L1 4365 6153 -2 29 47 0 0 chr3 1591876 1591919 -225932659 + AT_rich Low_complexity Low_complexity 1 43 0 254 272 39 39 chr3 1593101 1593204 -225931374 + L1ME LINE L1 5727 5829 -333 1439 286 12 45 chr3 1593430 1593940 -225930638 + L1MA4A LINE L1 1 493 -6356 4231 208 24 35 chr3 1594002 1594783 -225929795 + L1MA4A LINE L1 1168 1935 -4914 2260 114 0 16 chr3 1594783 1595100 -225929478 + AluSx SINE Alu 1 312 0 4231 208 24 35 chr3 1595100 1595397 -225929181 + L1MA4A LINE L1 1935 2234 -4615 4825 141 6 4 chr3 1595440 1596263 -225928315 + L1PA16 LINE L1 5329 6153 -13 9020 180 45 10 chr3 1596287 1597424 -225927154 + L1MA4A LINE L1 3881 4976 -2029 2547 65 0 0 chr3 1597424 1597732 -225926846 + AluY SINE Alu 1 308 -3 9020 180 45 10 chr3 1597732 1598670 -225925908 + L1MA4A LINE L1 4976 5879 -1126 1467 118 5 0 chr3 1598670 1598873 -225925705 + AluSq SINE Alu 101 304 -9 9020 180 45 10 chr3 1598873 1599649 -225924929 + L1MA4A LINE L1 5879 6821 -184 403 177 10 42 chr3 1599650 1599746 -225924832 + L1MA4A LINE L1 6890 6982 -23 249 250 31 0 chr3 1600680 1600744 -225923834 - MLT2D LTR ERVL -118 296 231 237 192 39 0 chr3 1601052 1601104 -225923474 - MLT2D LTR ERVL -130 284 231 324 0 0 0 chr3 1601289 1601325 -225923253 + (GA)n Simple_repeat Simple_repeat 2 37 0 355 348 61 6 chr3 1602498 1602662 -225921916 - L1ME LINE L1 -348 5822 5650 1453 158 9 0 chr3 1603010 1603231 -225921347 - AluSg/x SINE Alu -25 287 65 6729 122 14 53 chr3 1603232 1604144 -225920434 - L1M1 LINE L1 -4670 2895 1949 1889 186 0 3 chr3 1604144 1604451 -225920127 - AluJb SINE Alu -6 306 1 6729 122 14 53 chr3 1604451 1604472 -225920106 - L1M1 LINE L1 -5616 1949 1929 2171 108 4 0 chr3 1604472 1604751 -225919827 - AluSp SINE Alu -33 280 1 6729 122 14 53 chr3 1604751 1605071 -225919507 - L1M1 LINE L1 -5636 1929 1690 823 234 6 33 chr3 1605071 1605428 -225919150 - LTR2 LTR ERV1 0 449 3 801 154 0 0 chr3 1605430 1605566 -225919012 - Harlequin LTR ERV1 0 6896 6761 29339 163 8 19 chr3 1605623 1610930 -225913648 - Harlequin LTR ERV1 -1297 6516 1266 2721 164 30 6 chr3 1610931 1611425 -225913153 - Harlequin LTR ERV1 -6796 1017 512 2095 170 3 13 chr3 1611506 1611894 -225912684 - Harlequin LTR ERV1 -6512 384 1 850 201 5 5 chr3 1611894 1612078 -225912500 - LTR2 LTR ERV1 0 449 266 1186 155 71 8 chr3 1612147 1612386 -225912192 - MSTA LTR MaLR -164 264 11 22 0 0 0 chr3 1612989 1613011 -225911567 + AT_rich Low_complexity Low_complexity 1 22 0 1749 117 79 10 chr3 1613303 1613594 -225910984 + L1PA10 LINE L1 5858 6168 0 2800 222 26 39 chr3 1615470 1615854 -225908724 + L1ME2 LINE L1 4867 5254 -910 2203 138 8 114 chr3 1615854 1615995 -225908583 - Tigger2a DNA MER2_type -2274 434 280 1385 184 54 22 chr3 1615995 1616272 -225908306 - AluJo SINE Alu -26 286 1 2203 138 8 114 chr3 1616272 1616614 -225907964 - Tigger2a DNA MER2_type -2428 280 2 2800 222 26 39 chr3 1616614 1616861 -225907717 + L1ME2 LINE L1 5254 5503 -661 1701 197 77 64 chr3 1616861 1617358 -225907220 - MLT1D LTR MaLR -2 503 1 2800 222 26 39 chr3 1617358 1618004 -225906574 + L1ME2 LINE L1 5503 6148 -16 21 0 0 0 chr3 1618426 1618447 -225906131 + AT_rich Low_complexity Low_complexity 1 21 0 1117 215 11 21 chr3 1620607 1620886 -225903692 - MLT1C LTR MaLR -6 461 186 647 183 82 67 chr3 1620901 1621109 -225903469 - MLT1C LTR MaLR -256 211 1 208 304 0 0 chr3 1621340 1621396 -225903182 + L2 LINE L2 3217 3272 0 1547 169 177 14 chr3 1621430 1621791 -225902787 + MSTA LTR MaLR 9 428 0 191 185 0 19 chr3 1622840 1622894 -225901684 + (TA)n Simple_repeat Simple_repeat 2 54 0 282 290 45 142 chr3 1623085 1623416 -225901162 + L2 LINE L2 2969 3267 -5 1870 125 3 10 chr3 1624629 1624917 -225899661 - L1PA11 LINE L1 -1 6173 5888 21 0 0 0 chr3 1625120 1625141 -225899437 + AT_rich Low_complexity Low_complexity 1 21 0 1135 248 95 24 chr3 1625180 1626113 -225898465 - L1ME1 LINE L1 -18 6148 5122 6348 133 17 8 chr3 1626158 1627457 -225897121 - L1MA1 LINE L1 -8 6294 4982 2007 141 26 32 chr3 1627481 1627858 -225896720 + THE1C LTR MaLR 1 375 0 8216 132 26 31 chr3 1627884 1629312 -225895266 + THE1C-int LTR MaLR 161 1580 0 1314 158 13 18 chr3 1629312 1629540 -225895038 + THE1C LTR MaLR 1 227 -148 658 130 10 0 chr3 1629542 1629642 -225894936 - LTR28 LTR ERV1 -919 101 1 18109 177 37 12 chr3 1629642 1633039 -225891539 - L1M1 LINE L1 -4077 3488 7 2434 262 56 40 chr3 1633037 1633618 -225890960 - L1ME1 LINE L1 -1080 5066 4496 * 1733 173 52 25 chr3 1633618 1633983 -225890595 - THE1C LTR MaLR 0 375 1 2434 262 56 40 chr3 1633983 1634610 -225889968 - L1ME1 LINE L1 -1650 4496 3839 1048 245 31 0 chr3 1634629 1634682 -225889896 - L1ME1 LINE L1 -3408 2738 2688 448 16 33 0 chr3 1634682 1634743 -225889835 + (TAGA)n Simple_repeat Simple_repeat 4 66 0 1048 245 31 0 chr3 1634743 1634975 -225889603 - L1ME1 LINE L1 -3458 2688 2444 1150 235 93 55 chr3 1634988 1635342 -225889236 + L1ME1 LINE L1 4682 5021 -1145 1926 154 28 25 chr3 1635342 1635705 -225888873 - THE1B LTR MaLR 0 364 1 1150 235 93 55 chr3 1635705 1636380 -225888198 + L1ME1 LINE L1 5021 5735 -431 24321 107 14 2 chr3 1636388 1640856 -225883722 - L1PA7 LINE L1 -4 6465 1963 235 252 7 43 chr3 1640891 1641030 -225883548 + (CACCC)n Simple_repeat Simple_repeat 2 135 0 186 192 0 0 chr3 1641033 1641085 -225883493 + C-rich Low_complexity Low_complexity 1 52 0 11692 126 14 18 chr3 1641189 1643254 -225881324 - L1PA7 LINE L1 -4379 2082 5 1437 241 32 15 chr3 1643262 1643672 -225880906 + L1ME1 LINE L1 5736 6152 -14 198 286 55 22 chr3 1643750 1643841 -225880737 - L2 LINE L2 -534 2780 2687 180 0 0 0 chr3 1644041 1644061 -225880517 + (TTTA)n Simple_repeat Simple_repeat 2 21 0 5776 22 1 0 chr3 1644061 1644731 -225879847 - L1PA3 LINE L1 -11 6144 5474 20663 50 51 4 chr3 1644831 1647499 -225877079 - L1P LINE L1 -3352 2794 2 6220 199 34 14 chr3 1647721 1648971 -225875607 - MSTB-int LTR MaLR -375 1276 1 1316 183 29 17 chr3 1648971 1649212 -225875366 - MSTB LTR MaLR 0 426 183 2131 175 51 24 chr3 1649212 1649703 -225874875 - MER75 DNA T2_type 0 514 11 428 172 0 0 chr3 1649685 1649749 -225874829 - MER75 DNA T2_type -443 71 8 * 1008 193 11 16 chr3 1649749 1649936 -225874642 - MSTB LTR MaLR -240 186 1 803 180 22 51 chr3 1650638 1650816 -225873762 + MER58A DNA MER1_type 45 217 -7 21 0 0 0 chr3 1651208 1651229 -225873349 + AT_rich Low_complexity Low_complexity 1 21 0 227 344 150 22 chr3 1651257 1651437 -225873141 + L3 LINE CR1 1374 1576 -1 280 276 200 5 chr3 1651884 1652094 -225872484 - L1ME4a LINE L1 -113 6008 5758 2185 171 55 0 chr3 1653559 1653957 -225870621 + MSTB LTR MaLR 1 420 -6 349 273 116 0 chr3 1654497 1654618 -225869960 + MIR SINE MIR 65 199 -63 185 397 0 0 chr3 1656222 1656290 -225868288 + L2 LINE L2 2794 2861 -453 190 373 15 0 chr3 1657800 1657867 -225866711 + MIR3 SINE MIR 89 156 -52 211 284 54 0 chr3 1657919 1657993 -225866585 - MIR SINE MIR -5 257 180 1322 206 16 38 chr3 1658037 1658352 -225866226 + AluJo SINE Alu 3 310 -2 514 296 22 22 chr3 1658657 1658836 -225865742 - MLT1J LTR MaLR -325 186 8 198 325 98 32 chr3 1658854 1658977 -225865601 - MIR SINE MIR -115 147 17 24 0 0 0 chr3 1659468 1659492 -225865086 + AT_rich Low_complexity Low_complexity 1 24 0 217 117 83 0 chr3 1659921 1659981 -225864597 + (TA)n Simple_repeat Simple_repeat 1 65 0 333 296 110 76 chr3 1660550 1660790 -225863788 - HAL1 LINE L1 -556 1951 1692 904 223 0 0 chr3 1660790 1660965 -225863613 - FAM SINE Alu 0 175 1 333 296 110 76 chr3 1660965 1661106 -225863472 - HAL1 LINE L1 -815 1692 1557 401 315 123 30 chr3 1661113 1661348 -225863230 - HAL1 LINE L1 -1090 1417 1161 1127 235 39 78 chr3 1661771 1662183 -225862395 - MSTD LTR MaLR 0 396 1 1848 152 3 7 chr3 1662480 1662769 -225861809 - AluSx SINE Alu -14 298 11 233 292 0 0 chr3 1662904 1662976 -225861602 + MER116 DNA Mariner 6 77 -3 222 37 0 0 chr3 1714455 1714482 -225810096 + (CA)n Simple_repeat Simple_repeat 2 28 0 230 162 0 0 chr3 1714853 1714890 -225809688 - MLT2C2 LTR ERVL -2 462 426 926 208 63 0 chr3 1714927 1715134 -225809444 - MLT2B1 LTR ERVL -300 220 1 21 36 0 0 chr3 1716013 1716041 -225808537 + AT_rich Low_complexity Low_complexity 1 28 0 1763 205 3 6 chr3 1716143 1716504 -225808074 - MER46B DNA MER2_type -1 235 1 21 57 0 0 chr3 1717813 1717848 -225806730 + AT_rich Low_complexity Low_complexity 1 35 0 672 252 26 52 chr3 1718832 1719062 -225805516 + MIR SINE MIR 13 236 -26 572 328 58 17 chr3 1719235 1719476 -225805102 - MIR SINE MIR 0 262 12 1718 237 92 13 chr3 1719485 1720020 -225804558 + MER119 DNA MER1_type 7 583 0 2256 204 60 30 chr3 1720160 1720698 -225803880 - MLT2B3 LTR ERVL 0 554 1 251 325 36 0 chr3 1720920 1721003 -225803575 - L2 LINE L2 -3 3269 3184 197 319 132 42 chr3 1722386 1722530 -225802048 - L2 LINE L2 0 3272 3116 313 321 142 37 chr3 1722792 1722954 -225801624 + HAL1 LINE L1 228 406 -2101 1996 123 0 14 chr3 1723402 1723714 -225800864 + AluSg SINE Alu 1 308 0 427 265 128 95 chr3 1723972 1724633 -225799945 + HAL1 LINE L1 1612 2310 -197 2075 128 0 19 chr3 1724633 1724945 -225799633 - AluSx SINE Alu -6 306 1 427 265 128 95 chr3 1724945 1725147 -225799431 + HAL1 LINE L1 2310 2504 -3 303 244 74 67 chr3 1725355 1725490 -225799088 + MIR SINE MIR 11 146 -116 601 331 79 64 chr3 1725593 1725986 -225798592 + LTR16C LTR ERVL 89 487 -4 192 111 0 0 chr3 1726789 1726825 -225797753 + (A)n Simple_repeat Simple_repeat 1 36 0 279 0 0 0 chr3 1727254 1727285 -225797293 + (TG)n Simple_repeat Simple_repeat 1 31 0 2652 245 126 13 chr3 1727657 1728825 -225795753 - L1ME2 LINE L1 -9 6155 4854 757 301 33 5 chr3 1729827 1730040 -225794538 + MIR SINE MIR 2 220 -42 21 0 0 0 chr3 1730097 1730118 -225794460 + AT_rich Low_complexity Low_complexity 1 21 0 378 159 35 7 chr3 1730189 1730334 -225794244 + GA-rich Low_complexity Low_complexity 1 149 0 2589 216 31 19 chr3 1730369 1730984 -225793594 - L1MB5 LINE L1 -8 6166 5545 * 2812 246 29 67 chr3 1730951 1732009 -225792569 - L1MB5 LINE L1 -1367 4779 3762 766 236 34 39 chr3 1732009 1732217 -225792361 + MER20 DNA MER1_type 13 219 0 1070 146 5 21 chr3 1732431 1732623 -225791955 + L1PB2 LINE L1 5956 6144 -7 242 298 0 0 chr3 1732873 1732930 -225791648 + L2 LINE L2 3230 3286 -27 22 35 0 0 chr3 1734221 1734250 -225790328 + AT_rich Low_complexity Low_complexity 1 29 0 375 267 74 93 chr3 1734349 1734619 -225789959 + L2 LINE L2 3043 3307 -6 261 220 57 14 chr3 1734899 1735040 -225789538 + (TA)n Simple_repeat Simple_repeat 2 148 0 1482 338 58 38 chr3 1736573 1737773 -225786805 + HERV16 LTR ERVL 1799 3021 -1975 897 328 77 32 chr3 1737898 1738572 -225786006 + HERV16 LTR ERVL 3735 4457 -1028 266 125 21 0 chr3 1738580 1738628 -225785950 + (TG)n Simple_repeat Simple_repeat 2 50 0 603 145 8 63 chr3 1738630 1739135 -225785443 + (TATATG)n Simple_repeat Simple_repeat 1 477 0 225 284 47 101 chr3 1740549 1740697 -225783881 + LTR16C LTR ERVL 352 491 0 310 277 0 80 chr3 1740722 1740859 -225783719 - MLT1H LTR MaLR 0 549 424 680 271 81 44 chr3 1740893 1741188 -225783390 - MLT1H LTR MaLR -243 306 1 327 288 220 11 chr3 1742525 1742716 -225781862 + MIR SINE MIR 13 243 -19 311 238 0 0 chr3 1743057 1743120 -225781458 - MER69 DNA AcHobo 0 2526 2464 252 0 0 0 chr3 1743262 1743290 -225781288 + (A)n Simple_repeat Simple_repeat 1 28 0 267 79 0 0 chr3 1743770 1743808 -225780770 + (TG)n Simple_repeat Simple_repeat 2 39 0 568 310 44 31 chr3 1743993 1744222 -225780356 + MIR SINE MIR 29 260 -2 1586 237 70 57 chr3 1744470 1745073 -225779505 - L1ME2 LINE L1 -5 6161 5567 203 0 0 36 chr3 1745073 1745101 -225779477 + (TTTTA)n Simple_repeat Simple_repeat 4 30 0 1484 201 3 3 chr3 1745111 1745395 -225779183 - AluJb SINE Alu -26 286 3 1586 237 70 57 chr3 1745395 1745760 -225778818 - L1ME2 LINE L1 -607 5559 5031 1915 76 29 11 chr3 1745760 1746036 -225778542 - L1PA11 LINE L1 0 6174 5894 1586 237 70 57 chr3 1746036 1746225 -225778353 - L1ME2 LINE L1 -1135 5031 4846 995 293 66 7 chr3 1746256 1746679 -225777899 - L1ME2 LINE L1 -1259 4887 4440 1956 327 64 1 chr3 1746707 1747454 -225777124 - L2 LINE L2 -1190 2124 1331 21 36 0 0 chr3 1747556 1747584 -225776994 + AT_rich Low_complexity Low_complexity 1 28 0 24 0 0 0 chr3 1747606 1747630 -225776948 + AT_rich Low_complexity Low_complexity 1 24 0 185 170 21 43 chr3 1750483 1750530 -225774048 - MER5C DNA MER1_type 0 324 279 29 28 0 0 chr3 1751010 1751046 -225773532 + AT_rich Low_complexity Low_complexity 1 36 0 2128 90 0 4 chr3 1751113 1751421 -225773157 + AluSc SINE Alu 1 307 0 826 285 92 64 chr3 1751422 1752177 -225772401 - HAL1b LINE L1 -234 1114 323 210 91 0 0 chr3 1752177 1752210 -225772368 + (TG)n Simple_repeat Simple_repeat 2 34 0 826 285 92 64 chr3 1752210 1752429 -225772149 - HAL1b LINE L1 -1025 323 112 183 129 0 0 chr3 1753297 1753328 -225771250 + (TGAA)n Simple_repeat Simple_repeat 3 33 0 635 331 20 36 chr3 1753463 1753711 -225770867 + MIR SINE MIR 16 259 -3 1269 27 0 0 chr3 1754018 1754167 -225770411 + L1PA3 LINE L1 6002 6150 -5 23 0 0 0 chr3 1754167 1754190 -225770388 + AT_rich Low_complexity Low_complexity 1 23 0 306 0 0 0 chr3 1754681 1754715 -225769863 + (CA)n Simple_repeat Simple_repeat 1 34 0 261 0 0 0 chr3 1754714 1754743 -225769835 + (TA)n Simple_repeat Simple_repeat 1 29 0 * 28 0 0 0 chr3 1754975 1755003 -225769575 + AT_rich Low_complexity Low_complexity 1 28 0 2327 56 0 0 chr3 1755095 1755381 -225769197 + AluY SINE Alu 2 287 -24 28 0 0 0 chr3 1755381 1755409 -225769169 + AT_rich Low_complexity Low_complexity 1 28 0 28 0 0 0 chr3 1755963 1755991 -225768587 + AT_rich Low_complexity Low_complexity 1 28 0 2327 56 0 0 chr3 1756083 1756369 -225768209 + AluY SINE Alu 2 287 -24 28 0 0 0 chr3 1756369 1756397 -225768181 + AT_rich Low_complexity Low_complexity 1 28 0 254 228 60 75 chr3 1757316 1757540 -225767038 - L1MEd LINE L1 -4894 1225 1125 25 75 0 0 chr3 1757624 1757677 -225766901 + AT_rich Low_complexity Low_complexity 1 53 0 234 350 46 53 chr3 1757801 1758084 -225766494 - L1MEd LINE L1 -5343 776 496 2257 48 7 0 chr3 1759364 1759656 -225764922 + AluY SINE Alu 2 295 -16 2343 59 3 0 chr3 1759740 1760043 -225764535 + AluY SINE Alu 1 304 -7 1305 62 6 0 chr3 1760166 1760342 -225764236 + AluY SINE Alu 132 308 -3 22 56 0 0 chr3 1761180 1761216 -225763362 + AT_rich Low_complexity Low_complexity 1 36 0 404 371 9 0 chr3 1761222 1761338 -225763240 - L2 LINE L2 -8 3305 3189 226 209 15 15 chr3 1761834 1761901 -225762677 - L1ME4a LINE L1 -3 6118 6052 723 298 88 51 chr3 1761929 1762573 -225762005 - L1ME4a LINE L1 -139 5982 5315 208 338 27 0 chr3 1762959 1763033 -225761545 + L2 LINE L2 3194 3269 -3 2180 274 49 53 chr3 1763657 1764852 -225759726 + HAL1 LINE L1 1169 2359 -148 25 0 0 0 chr3 1764954 1764979 -225759599 + AT_rich Low_complexity Low_complexity 1 25 0 21 36 0 0 chr3 1766044 1766072 -225758506 + AT_rich Low_complexity Low_complexity 1 28 0 248 319 11 32 chr3 1767528 1767622 -225756956 - MLT1K LTR MaLR -15 573 482 279 340 21 0 chr3 1768124 1768218 -225756360 + MIR SINE MIR 45 140 -68 349 303 328 5 chr3 1768331 1768526 -225756052 + MIR SINE MIR 2 259 -3 1482 163 0 105 chr3 1769007 1769339 -225755239 - AluJb SINE Alu -15 297 1 219 36 0 0 chr3 1769505 1769533 -225755045 + (TTTG)n Simple_repeat Simple_repeat 2 29 0 193 324 6 6 chr3 1769747 1769836 -225754742 - MIR SINE MIR -100 108 19 21 57 0 0 chr3 1771787 1771822 -225752756 + AT_rich Low_complexity Low_complexity 1 35 0 21 0 0 0 chr3 1772101 1772122 -225752456 + AT_rich Low_complexity Low_complexity 1 21 0 28695 121 76 9 chr3 1773765 1779523 -225745055 - L1PA7 LINE L1 -2 6152 12 218 105 26 0 chr3 1780137 1780175 -225744403 + (TAGA)n Simple_repeat Simple_repeat 2 40 0 283 264 72 64 chr3 1780307 1780432 -225744146 - MLT1K LTR MaLR -181 407 282 28 61 0 0 chr3 1781208 1781257 -225743321 + AT_rich Low_complexity Low_complexity 1 49 0 1528 211 13 3 chr3 1781449 1781753 -225742825 - 7SLRNA srpRNA srpRNA -13 307 1 299 332 45 10 chr3 1781760 1781962 -225742616 - L1MC4a LINE L1 -1923 5885 5677 6178 95 9 3 chr3 1782063 1783693 -225740885 + L1PA13 LINE L1 4516 6162 -1 246 278 133 0 chr3 1783813 1783903 -225740675 + MIR SINE MIR 110 211 -51 384 181 123 48 chr3 1785452 1785613 -225738965 + MER20 DNA MER1_type 2 219 0 29 28 0 0 chr3 1786181 1786217 -225738361 + AT_rich Low_complexity Low_complexity 1 36 0 387 0 0 0 chr3 1787194 1787237 -225737341 + (T)n Simple_repeat Simple_repeat 1 43 0 282 267 76 29 chr3 1787297 1787402 -225737176 + MIR SINE MIR 79 188 -74 24 0 0 0 chr3 1787677 1787701 -225736877 + AT_rich Low_complexity Low_complexity 1 24 0 1686 219 115 22 chr3 1787811 1788273 -225736305 + MLT1D LTR MaLR 1 505 0 2267 74 0 7 chr3 1788419 1788737 -225735841 - AluY SINE Alu 0 316 1 282 116 0 0 chr3 1790453 1790496 -225734082 + (TA)n Simple_repeat Simple_repeat 2 44 0 299 281 114 9 chr3 1790623 1790737 -225733841 - L2 LINE L2 0 3272 3147 600 260 201 43 chr3 1791344 1791736 -225732842 + LTR16A1 LTR ERVL 1 454 -3 291 292 28 0 chr3 1791741 1791813 -225732765 + L2 LINE L2 3196 3269 -3 22 35 0 0 chr3 1792109 1792138 -225732440 + AT_rich Low_complexity Low_complexity 1 29 0 210 143 0 0 chr3 1792968 1793003 -225731575 + (TGAA)n Simple_repeat Simple_repeat 1 35 0 995 205 71 26 chr3 1793577 1793845 -225730733 + MER21B LTR ERV1 470 749 -114 401 300 202 5 chr3 1794256 1794623 -225729955 + HAL1 LINE L1 1373 1811 -696 24 32 0 0 chr3 1796759 1796790 -225727788 + AT_rich Low_complexity Low_complexity 1 31 0 196 333 0 13 chr3 1797435 1797510 -225727068 - MIR SINE MIR -21 241 168 181 323 15 0 chr3 1798164 1798229 -225726349 + L2 LINE L2 2171 2236 -1078 1915 139 4 0 chr3 1798234 1798507 -225726071 - MER1A DNA MER1_type -194 335 62 190 371 14 0 chr3 1798544 1798614 -225725964 + L2 LINE L2 2302 2372 -942 300 310 41 16 chr3 1799336 1799538 -225725040 - MLT1J LTR MaLR -1 510 241 310 252 126 17 chr3 1799658 1799777 -225724801 - MLT1J LTR MaLR -371 140 9 2188 132 0 3 chr3 1799953 1800264 -225724314 - AluSx SINE Alu 0 312 3 255 200 0 0 chr3 1800309 1800354 -225724224 - MIR SINE MIR -121 141 97 332 302 75 0 chr3 1800356 1800462 -225724116 + L3 LINE CR1 1463 1576 -1 369 336 69 18 chr3 1801348 1801492 -225723086 + MIR SINE MIR 10 170 -92 180 0 0 0 chr3 1801492 1801512 -225723066 + (TTTG)n Simple_repeat Simple_repeat 3 22 0 369 336 69 18 chr3 1801512 1801584 -225722994 + MIR SINE MIR 170 237 -25 184 182 36 73 chr3 1801611 1801666 -225722912 - L3b LINE CR1 -115 1468 1416 641 293 5 40 chr3 1802026 1802248 -225722330 - MIR SINE MIR -40 222 9 21 43 0 0 chr3 1802823 1802846 -225721732 + AT_rich Low_complexity Low_complexity 1 23 0 2300 106 0 0 chr3 1803065 1803368 -225721210 - AluSx SINE Alu -7 305 3 974 258 57 8 chr3 1803409 1803657 -225720921 - MLT1E3 LTR MaLR -194 430 171 403 276 118 0 chr3 1803685 1803812 -225720766 - MLT1E3 LTR MaLR -505 149 8 2076 128 0 0 chr3 1804070 1804368 -225720210 - AluSg SINE Alu -12 298 1 1759 224 47 63 chr3 1805761 1806637 -225717941 - L1MCb LINE L1 -4852 844 333 679 266 5 18 chr3 1806636 1806854 -225717724 - L1MCb LINE L1 -5467 929 715 * 429 321 32 43 chr3 1807080 1807357 -225717221 - L1MCb LINE L1 -6031 365 92 281 297 31 78 chr3 1807369 1807497 -225717081 - MIR SINE MIR -124 138 17 322 311 87 6 chr3 1807579 1807740 -225716838 + L1ME4a LINE L1 5946 6119 -2 2005 114 20 7 chr3 1807745 1808043 -225716535 + AluSg SINE Alu 1 302 -8 8680 119 33 23 chr3 1808869 1810417 -225714161 - HERVH LTR ERV1 -5541 2172 460 481 99 0 0 chr3 1810397 1810468 -225714110 - HERVH LTR ERV1 -7642 71 1 * 1972 111 57 104 chr3 1810470 1810940 -225713638 - LTR7 LTR ERV1 -2 448 1 3162 95 32 2 chr3 1810940 1811043 -225713535 + L1PB1 LINE L1 5677 5775 -376 940 79 14 0 chr3 1811043 1811182 -225713396 + (TA)n Simple_repeat Simple_repeat 2 142 0 3162 95 32 2 chr3 1811182 1811539 -225713039 + L1PB1 LINE L1 5775 6151 0 1438 111 65 0 chr3 1811665 1811881 -225712697 + MER30 DNA MER1_type 1 230 0 1586 261 89 46 chr3 1811916 1812747 -225711831 - L1ME3A LINE L1 -16 6154 5288 283 296 70 12 chr3 1812794 1812966 -225711612 - L1ME3A LINE L1 -926 5220 5039 186 43 0 0 chr3 1813010 1813033 -225711545 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 420 262 40 24 chr3 1814279 1814405 -225710173 - MIR SINE MIR -74 188 61 1932 119 0 0 chr3 1814405 1814665 -225709913 + AluSq SINE Alu 21 280 -33 363 89 0 0 chr3 1814665 1814721 -225709857 + AluSp/q SINE Alu 245 300 -3 185 349 32 16 chr3 1814721 1814784 -225709794 - MIR SINE MIR -186 76 13 554 229 179 0 chr3 1814789 1814929 -225709649 - MER5A DNA MER1_type -1 188 24 210 190 177 76 chr3 1815125 1815204 -225709374 - L2 LINE L2 0 3313 3227 199 54 54 36 chr3 1815763 1815819 -225708759 + T-rich Low_complexity Low_complexity 6 62 0 23 0 0 0 chr3 1815961 1815984 -225708594 + AT_rich Low_complexity Low_complexity 1 23 0 258 237 51 17 chr3 1816029 1816088 -225708490 - MIR SINE MIR -161 101 41 1860 331 77 36 chr3 1816304 1817508 -225707070 + L2 LINE L2 11 1264 -2050 300 267 83 25 chr3 1818203 1818323 -225706255 - L1ME4a LINE L1 -48 6073 5947 1379 176 114 29 chr3 1819418 1819691 -225704887 - MER1B DNA MER1_type -43 296 1 21 36 0 0 chr3 1819855 1819883 -225704695 + AT_rich Low_complexity Low_complexity 1 28 0 22 56 0 0 chr3 1819901 1819937 -225704641 + AT_rich Low_complexity Low_complexity 1 36 0 277 244 100 91 chr3 1820014 1820244 -225704334 - L1ME3A LINE L1 -154 6016 5785 299 333 37 9 chr3 1820357 1820465 -225704113 - L2 LINE L2 -20 3252 3142 986 262 136 40 chr3 1820699 1821149 -225703429 - MLT1H LTR MaLR -54 495 3 252 86 0 0 chr3 1821249 1821284 -225703294 + (GAAA)n Simple_repeat Simple_repeat 2 36 0 865 195 6 18 chr3 1821507 1821676 -225702902 - FRAM SINE Alu -14 162 1 188 33 0 33 chr3 1821676 1821706 -225702872 + (TTTTA)n Simple_repeat Simple_repeat 2 30 0 1491 213 0 11 chr3 1821711 1821997 -225702581 - AluJb SINE Alu -24 288 6 712 319 168 17 chr3 1822069 1822545 -225702033 - L2 LINE L2 -665 2649 2102 319 345 84 20 chr3 1822562 1823052 -225701526 - L1ME4a LINE L1 -297 5824 5304 746 216 155 0 chr3 1824727 1824921 -225699657 - MER58A DNA MER1_type 0 224 1 389 263 192 27 chr3 1824957 1825181 -225699397 - MIR SINE MIR 0 262 2 317 279 91 71 chr3 1825436 1825634 -225698944 + MIR SINE MIR 19 212 -50 202 182 0 0 chr3 1825684 1825717 -225698861 + (CA)n Simple_repeat Simple_repeat 2 34 0 206 336 173 0 chr3 1825839 1825943 -225698635 - L3b LINE CR1 -27 1556 1435 2605 103 16 0 chr3 1826418 1826787 -225697791 + THE1C LTR MaLR 1 375 0 313 286 24 0 chr3 1826928 1827012 -225697566 + L2 LINE L2 3222 3307 -6 508 361 47 29 chr3 1827043 1827384 -225697194 - LTR16C LTR ERVL -8 483 137 291 291 60 46 chr3 1828491 1828642 -225695936 + MIR SINE MIR 5 157 -105 229 218 11 35 chr3 1828704 1828791 -225695787 + (TAAA)n Simple_repeat Simple_repeat 1 85 0 384 308 63 6 chr3 1829198 1829357 -225695221 - MLT1F LTR MaLR -374 168 1 438 335 182 23 chr3 1829507 1829946 -225694632 - L2 LINE L2 -1 3312 2804 235 182 55 0 chr3 1830004 1830059 -225694519 - L2 LINE L2 -6 3307 3250 22 0 0 0 chr3 1830382 1830404 -225694174 + AT_rich Low_complexity Low_complexity 1 22 0 3518 142 39 29 chr3 1830404 1831092 -225693486 - L1MA7 LINE L1 0 6291 5597 324 283 75 12 chr3 1831655 1831828 -225692750 + MER113 DNA MER1_type? 34 217 -304 679 132 294 0 chr3 1832779 1832915 -225691663 - AluSc SINE Alu -7 302 127 291 301 0 32 chr3 1833178 1833271 -225691307 + MIR SINE MIR 78 167 -95 25 0 0 0 chr3 1833528 1833553 -225691025 + AT_rich Low_complexity Low_complexity 1 25 0 2532 64 0 0 chr3 1834153 1834451 -225690127 + AluY SINE Alu 1 298 -13 1038 163 0 37 chr3 1834651 1834841 -225689737 + FRAM SINE Alu 1 175 -1 544 305 58 36 chr3 1834912 1835135 -225689443 - MIR SINE MIR -27 235 8 197 286 0 0 chr3 1836656 1836705 -225687873 + MIR SINE MIR 2 50 -212 1396 167 116 25 chr3 1836728 1837004 -225687574 - AluSx SINE Alu -6 306 6 2433 135 3 3 chr3 1837727 1838090 -225686488 + THE1B LTR MaLR 2 364 0 231 239 149 30 chr3 1838157 1838224 -225686354 + MIR SINE MIR 112 186 -76 23 33 0 0 chr3 1839985 1840015 -225684563 + AT_rich Low_complexity Low_complexity 1 30 0 193 333 0 13 chr3 1840660 1840735 -225683843 - MIR SINE MIR -21 241 168 197 297 247 18 chr3 1840915 1841296 -225683282 + L2 LINE L2 1528 1995 -1319 180 323 15 0 chr3 1841389 1841454 -225683124 + L2 LINE L2 2171 2236 -1078 1793 143 4 0 chr3 1841459 1841732 -225682846 - MER1A DNA MER1_type -194 335 62 186 371 14 0 chr3 1841769 1841839 -225682739 + L2 LINE L2 2302 2372 -942 255 315 33 10 chr3 1842589 1842763 -225681815 - MLT1J1 LTR MaLR -30 481 241 268 252 126 17 chr3 1842883 1843002 -225681576 - MLT1J LTR MaLR -371 140 9 2161 139 0 3 chr3 1843172 1843481 -225681097 - AluSx SINE Alu -2 310 3 252 200 0 0 chr3 1843526 1843571 -225681007 - MIR SINE MIR -121 141 97 327 302 75 0 chr3 1843573 1843679 -225680899 + L3 LINE CR1 1463 1576 -1 367 336 69 18 chr3 1844565 1844709 -225679869 + MIR SINE MIR 10 170 -92 180 0 0 0 chr3 1844709 1844729 -225679849 + (TTTG)n Simple_repeat Simple_repeat 3 22 0 367 336 69 18 chr3 1844729 1844801 -225679777 + MIR SINE MIR 170 237 -25 184 182 36 73 chr3 1844828 1844883 -225679695 - L3b LINE CR1 -115 1468 1416 641 293 5 40 chr3 1845247 1845469 -225679109 - MIR SINE MIR -40 222 9 23 0 0 0 chr3 1846044 1846067 -225678511 + AT_rich Low_complexity Low_complexity 1 23 0 2369 107 0 0 chr3 1846286 1846596 -225677982 - AluSx SINE Alu -2 310 1 872 263 38 8 chr3 1846647 1846883 -225677695 - MLT1E3 LTR MaLR -211 413 171 361 276 118 0 chr3 1846911 1847038 -225677540 - MLT1E3 LTR MaLR -505 149 8 1805 118 92 0 chr3 1847296 1847568 -225677010 - AluSg SINE Alu -12 298 2 243 0 0 0 chr3 1847815 1847842 -225676736 + (CA)n Simple_repeat Simple_repeat 2 28 0 1747 124 70 4 chr3 1848813 1849086 -225675492 - AluSx SINE Alu -21 291 1 21 36 0 0 chr3 1849094 1849122 -225675456 + AT_rich Low_complexity Low_complexity 1 28 0 2206 96 3 0 chr3 1849549 1849864 -225674714 + AluSq SINE Alu 1 313 0 1870 299 120 15 chr3 1850363 1851366 -225673212 - L2 LINE L2 -4 3309 2185 195 318 0 0 chr3 1851365 1851428 -225673150 - MIR SINE MIR -16 246 184 * 3250 86 8 72 chr3 1852014 1852029 -225672549 + L1M1 LINE L1 3535 3549 -4016 3096 57 0 86 chr3 1852029 1852507 -225672071 - L1PA7 LINE L1 0 6154 5718 3250 86 8 72 chr3 1852507 1853065 -225671513 + L1M1 LINE L1 3549 4073 -3492 726 260 29 6 chr3 1853068 1853241 -225671337 - MER20 DNA MER1_type -42 177 1 2046 169 57 33 chr3 1853400 1853856 -225670722 + MER41B LTR ERV1 113 579 -56 262 198 0 99 chr3 1853833 1853914 -225670664 + MER66A LTR ERV1 395 467 -11 * 2388 68 0 10 chr3 1855494 1855804 -225668774 - AluY SINE Alu -3 308 2 822 259 0 0 chr3 1855822 1856011 -225668567 + MER5A DNA MER1_type 1 189 0 692 134 0 0 chr3 1856346 1856458 -225668120 - MER41A LTR ERV1 0 554 443 993 74 0 15 chr3 1856564 1856699 -225667879 - AluSq/x SINE Alu -179 133 1 21 36 0 0 chr3 1857136 1857164 -225667414 + AT_rich Low_complexity Low_complexity 1 28 0 1747 124 70 4 chr3 1857172 1857445 -225667133 + AluSx SINE Alu 1 291 -21 1478 95 7 62 chr3 1858176 1858481 -225666097 - AluY SINE Alu -23 288 1 3215 126 35 14 chr3 1858481 1859507 -225665071 - L1PBa LINE L1 -5031 1832 636 980 159 20 0 chr3 1859509 1859704 -225664874 - L1PBa LINE L1 -6663 200 2 30 27 0 0 chr3 1859807 1859844 -225664734 + AT_rich Low_complexity Low_complexity 1 37 0 22 0 0 0 chr3 1861061 1861083 -225663495 + AT_rich Low_complexity Low_complexity 1 22 0 278 340 60 0 chr3 1861108 1861208 -225663370 + MIR SINE MIR 57 162 -100 2219 124 0 3 chr3 1861521 1861828 -225662750 - AluSx SINE Alu -6 306 1 340 272 99 74 chr3 1862155 1862438 -225662140 + L1ME4a LINE L1 5611 5900 -221 247 130 0 0 chr3 1862725 1862771 -225661807 + MER45C DNA AcHobo 95 140 -813 4362 206 105 36 chr3 1862915 1864187 -225660391 + MER45R DNA AcHobo 222 1580 -1 236 356 22 11 chr3 1864640 1864730 -225659848 + L2 LINE L2 3223 3313 0 235 238 138 0 chr3 1865385 1865465 -225659113 - L1MC5 LINE L1 -397 7564 7474 360 42 0 0 chr3 1865483 1865531 -225659047 - L1PA3 LINE L1 -3 6152 6105 1120 47 0 0 chr3 1865531 1865679 -225658899 + L1PA4 LINE L1 5930 6077 -78 2017 149 10 0 chr3 1865814 1866122 -225658456 + AluSx SINE Alu 1 311 -1 31 82 0 0 chr3 1869035 1869108 -225655470 + AT_rich Low_complexity Low_complexity 1 73 0 270 306 189 0 chr3 1870198 1870309 -225654269 - MIR SINE MIR -57 151 20 181 333 30 20 chr3 1870335 1870434 -225654144 + MER5A DNA MER1_type 34 133 -56 226 273 0 0 chr3 1873752 1873807 -225650771 + L2 LINE L2 3254 3308 -5 263 344 164 0 chr3 1873865 1873987 -225650591 - MIR SINE MIR -14 248 107 282 239 182 115 chr3 1874479 1874633 -225649945 + MER58A DNA MER1_type 1 174 -2246 1120 129 31 26 chr3 1874633 1874827 -225649751 + L1PA16 LINE L1 5962 6156 -10 282 239 182 115 chr3 1874827 1874881 -225649697 + MER58A DNA MER1_type 174 223 -1 640 272 28 14 chr3 1875832 1876049 -225648529 - MER58A DNA MER1_type -3 221 2 22 0 0 0 chr3 1877341 1877363 -225647215 + AT_rich Low_complexity Low_complexity 1 22 0 2016 181 17 67 chr3 1878791 1879267 -225645311 - MER66A LTR ERV1 0 478 27 665 152 29 14 chr3 1879339 1879477 -225645101 + L1MB1 LINE L1 6023 6162 -6 316 316 0 50 chr3 1879866 1880005 -225644573 + L1MC4 LINE L1 6571 6702 -1340 * 338 310 20 0 chr3 1879984 1880084 -225644494 - L1MC4 LINE L1 -1339 6703 6602 334 291 122 35 chr3 1881276 1881506 -225643072 + MIR SINE MIR 1 250 -12 38553 34 30 2 chr3 1882806 1888817 -225635761 + L1PA2 LINE L1 1 6155 0 23 0 0 0 chr3 1889155 1889178 -225635400 + AT_rich Low_complexity Low_complexity 1 23 0 1759 203 30 86 chr3 1890483 1891006 -225633572 - MLT1D LTR MaLR -8 618 1 310 259 99 15 chr3 1891014 1891145 -225633433 - MIR SINE MIR -15 247 106 392 287 64 35 chr3 1891650 1891869 -225632709 + MIR SINE MIR 20 245 -17 270 339 68 41 chr3 1892331 1892552 -225632026 - L2 LINE L2 -2 3311 3085 189 277 21 0 chr3 1892617 1892664 -225631914 - L2 LINE L2 -342 2972 2925 406 289 87 0 chr3 1894974 1895078 -225629500 - L2 LINE L2 -2 3270 3158 216 350 82 0 chr3 1895571 1895668 -225628910 + MIR3 SINE MIR 56 160 -48 186 304 10 69 chr3 1898209 1898311 -225626267 - MIR3 SINE MIR -39 169 74 238 333 24 0 chr3 1899070 1899154 -225625424 - MER81 DNA DNA -22 92 7 326 297 84 19 chr3 1899216 1899371 -225625207 + MIR SINE MIR 24 188 -74 1313 258 58 8 chr3 1900126 1900502 -225624076 + LTR16C LTR ERVL 97 491 0 624 217 0 0 chr3 1902209 1902324 -225622254 + AluJo SINE Alu 1 115 -187 626 188 0 0 chr3 1902324 1902459 -225622119 + AluJo SINE Alu 184 318 0 729 316 25 8 chr3 1903119 1903356 -225621222 - MIR SINE MIR 0 262 22 184 379 11 0 chr3 1903847 1903934 -225620644 + MIR SINE MIR 20 107 -155 304 0 87 0 chr3 1904436 1904482 -225620096 + T-rich Low_complexity Low_complexity 2 51 0 238 164 16 16 chr3 1905343 1905404 -225619174 + (CATATA)n Simple_repeat Simple_repeat 5 65 0 2114 105 3 3 chr3 1905476 1905762 -225618816 + AluSx SINE Alu 1 286 -26 198 307 92 43 chr3 1905965 1906126 -225618452 - MIR SINE MIR -68 140 2 375 277 44 25 chr3 1906176 1906335 -225618243 - MER103 DNA DNA 0 166 5 580 291 20 35 chr3 1906527 1906726 -225617852 + MIR SINE MIR 10 205 -57 386 259 32 138 chr3 1906930 1907177 -225617401 - MER102b DNA MER1_type -18 323 103 257 360 93 0 chr3 1907252 1907391 -225617187 - L3 LINE CR1 -1 1576 1425 491 297 24 38 chr3 1907407 1907616 -225616962 - MIR SINE MIR -53 209 4 * 1761 281 8 58 chr3 1907616 1908251 -225616327 - L3 LINE CR1 -180 1397 795 226 210 32 0 chr3 1908582 1908644 -225615934 + (TA)n Simple_repeat Simple_repeat 1 64 0 504 267 72 59 chr3 1908802 1909023 -225615555 + MER58A DNA MER1_type 1 224 0 946 251 127 0 chr3 1909077 1909344 -225615234 + MER110 LTR ERV1 46 346 -145 2566 149 9 41 chr3 1909351 1909794 -225614784 - MER57B LTR ERV1 -5 429 1 421 300 15 0 chr3 1909808 1909938 -225614640 + MER110 LTR ERV1 360 491 0 332 321 9 0 chr3 1910230 1910342 -225614236 + MIR3 SINE MIR 95 207 -1 1057 220 5 5 chr3 1912375 1912575 -225612003 - MER58A DNA MER1_type -24 200 1 249 209 0 95 chr3 1912659 1912764 -225611814 + L1MC4 LINE L1 6609 6703 -1339 288 249 44 88 chr3 1912799 1913004 -225611574 - MER46C DNA MER2_type -142 196 1 489 325 5 26 chr3 1913610 1913804 -225610774 - MIR3 SINE MIR 0 208 19 2023 141 3 6 chr3 1914062 1914374 -225610204 + AluSq SINE Alu 3 313 0 1246 314 38 7 chr3 1914519 1914940 -225609638 - MER74C LTR ERVL -17 443 10 292 380 29 37 chr3 1915003 1915248 -225609330 - MLT1K LTR MaLR -306 282 40 283 298 58 8 chr3 1915295 1915416 -225609162 + MER94 DNA DNA 8 134 0 199 346 71 50 chr3 1915586 1915768 -225608810 - L2 LINE L2 -501 2813 2628 * 334 377 117 20 chr3 1915761 1916162 -225608416 + L2 LINE L2 2536 2975 -339 236 222 0 16 chr3 1916497 1916560 -225608018 + (TAAA)n Simple_repeat Simple_repeat 1 62 0 25 0 0 0 chr3 1916842 1916867 -225607711 + AT_rich Low_complexity Low_complexity 1 25 0 282 287 30 20 chr3 1916993 1917094 -225607484 - MLT1H LTR MaLR -447 102 1 25 31 0 0 chr3 1917588 1917620 -225606958 + AT_rich Low_complexity Low_complexity 1 32 0 29 84 0 0 chr3 1918082 1918153 -225606425 + AT_rich Low_complexity Low_complexity 1 71 0 23 0 0 0 chr3 1918201 1918224 -225606354 + AT_rich Low_complexity Low_complexity 1 23 0 21 36 0 0 chr3 1918332 1918360 -225606218 + AT_rich Low_complexity Low_complexity 1 28 0 1006 289 86 42 chr3 1918410 1918936 -225605642 - MLT1H LTR MaLR 0 549 1 1662 220 77 46 chr3 1920460 1920942 -225603636 + MLT1D LTR MaLR 3 499 -6 271 234 404 0 chr3 1920948 1921042 -225603536 + L2 LINE L2 3141 3272 0 264 242 200 11 chr3 1921243 1921338 -225603240 + L2 LINE L2 3200 3312 -1 261 277 69 54 chr3 1921348 1921478 -225603100 - L2 LINE L2 -1 3271 3140 1943 134 3 3 chr3 1921877 1922203 -225602375 - AluSx SINE Alu 0 328 3 24 0 0 0 chr3 1922208 1922232 -225602346 + AT_rich Low_complexity Low_complexity 1 24 0 23 54 0 0 chr3 1922475 1922512 -225602066 + AT_rich Low_complexity Low_complexity 1 37 0 2350 96 3 0 chr3 1924197 1924509 -225600069 - AluSp SINE Alu 0 313 1 825 330 38 33 chr3 1924559 1925098 -225599480 + L2 LINE L2 2772 3311 -2 23 0 0 0 chr3 1925246 1925269 -225599309 + AT_rich Low_complexity Low_complexity 1 23 0 1682 170 26 13 chr3 1926358 1926782 -225597796 - AluJo SINE Alu 0 428 1 6715 105 13 35 chr3 1926803 1926959 -225597619 - L1MA2 LINE L1 0 6304 6146 392 36 0 18 chr3 1926959 1927014 -225597564 + (TTTA)n Simple_repeat Simple_repeat 3 56 0 1946 127 4 0 chr3 1927016 1927283 -225597295 - AluSx SINE Alu -44 268 1 6715 105 13 35 chr3 1927283 1928317 -225596261 - L1MA2 LINE L1 -159 6145 5137 813 217 0 30 chr3 1928344 1928510 -225596068 - FRAM SINE Alu -22 154 1 281 188 0 0 chr3 1928516 1928580 -225595998 + L1MC4 LINE L1 6640 6703 -1339 322 218 33 0 chr3 1928610 1928701 -225595877 - L1MC4 LINE L1 -1339 6983 1996 198 209 0 0 chr3 1928704 1928747 -225595831 + (CATATA)n Simple_repeat Simple_repeat 6 48 0 296 250 181 0 chr3 1928747 1928819 -225595759 - FLAM_A SINE Alu -16 117 33 412 264 0 0 chr3 1928952 1929039 -225595539 - Tigger7 DNA MER2_type -12 2575 2489 * 1234 160 20 116 chr3 1929037 1929331 -225595247 - Tigger7 DNA MER2_type -2220 267 2 24 77 0 0 chr3 1929370 1929422 -225595156 + AT_rich Low_complexity Low_complexity 1 52 0 444 237 21 0 chr3 1929465 1929562 -225595016 - MER5B DNA MER1_type -3 175 77 2150 115 0 0 chr3 1929606 1929885 -225594693 - AluSg SINE Alu -31 279 1 1073 242 81 36 chr3 1929895 1930111 -225594467 - L1ME3A LINE L1 0 6170 5965 216 0 0 0 chr3 1930111 1930135 -225594443 + (TA)n Simple_repeat Simple_repeat 1 24 0 1073 242 81 36 chr3 1930135 1930336 -225594242 - L1ME3A LINE L1 -205 5965 5734 194 258 91 45 chr3 1930341 1930407 -225594171 + MER5B DNA MER1_type 108 176 -2 22 35 0 0 chr3 1930428 1930457 -225594121 + AT_rich Low_complexity Low_complexity 1 29 0 1647 198 68 3 chr3 1930561 1930929 -225593649 - MER63D DNA MER1_type -4 1056 665 658 201 201 73 chr3 1930948 1931015 -225593563 - MER63D DNA MER1_type -628 433 376 212 0 0 35 chr3 1931015 1931044 -225593534 + (TA)n Simple_repeat Simple_repeat 1 28 0 658 201 201 73 chr3 1931044 1931319 -225593259 - MER63D DNA MER1_type -685 376 47 300 27 0 0 chr3 1931516 1931536 -225593042 + (CA)n Simple_repeat Simple_repeat 1 57 0 300 27 0 0 chr3 1931536 1931573 -225593005 + (CA)n Simple_repeat Simple_repeat 2 38 0 1597 169 4 22 chr3 1933204 1933482 -225591096 - AluJo SINE Alu -38 274 2 735 288 113 14 chr3 1933747 1934265 -225590313 + MLT2E LTR ERVL 25 626 -2 414 321 81 43 chr3 1935375 1935584 -225588994 - MIR SINE MIR 0 262 46 291 290 43 73 chr3 1935994 1936133 -225588445 - MIR SINE MIR -28 180 45 2975 83 0 2 chr3 1936434 1936831 -225587747 + L1PA8 LINE L1 5777 6172 0 207 0 0 0 chr3 1936917 1936940 -225587638 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 217 221 118 0 chr3 1936944 1937012 -225587566 + MIR SINE MIR 47 122 -140 521 237 44 7 chr3 1937406 1937541 -225587037 - MIR SINE MIR -111 151 12 1976 134 16 3 chr3 1937667 1937974 -225586604 - AluSx SINE Alu -1 311 1 560 284 126 48 chr3 1937994 1938265 -225586313 - LTR16C LTR ERVL 0 491 200 300 254 24 79 chr3 1938375 1938501 -225586077 - MIR SINE MIR -99 163 45 206 310 43 70 chr3 1938785 1938972 -225585606 - L2 LINE L2 -407 2907 2726 2278 113 0 7 chr3 1939720 1940030 -225584548 + AluSx SINE Alu 2 309 -3 434 341 74 9 chr3 1940529 1940746 -225583832 + MIR SINE MIR 18 248 -14 634 209 130 6 chr3 1941197 1941374 -225583204 - MER20 DNA MER1_type -20 199 1 1728 176 3 0 chr3 1941384 1941673 -225582905 - AluJo SINE Alu -22 290 1 249 274 27 0 chr3 1942143 1942216 -225582362 - MIR SINE MIR -6 256 182 351 0 0 0 chr3 1942387 1942426 -225582152 + (TG)n Simple_repeat Simple_repeat 2 40 0 619 256 45 25 chr3 1943118 1943317 -225581261 - MIR SINE MIR -14 248 46 419 321 25 6 chr3 1943573 1943732 -225580846 + MIR3 SINE MIR 45 206 -2 229 257 86 29 chr3 1944468 1944538 -225580040 + L2 LINE L2 3232 3305 -8 249 316 89 0 chr3 1944540 1944619 -225579959 - L2 LINE L2 -37 3235 3150 1580 176 48 0 chr3 1944721 1945011 -225579567 + AluJb SINE Alu 1 304 -8 479 325 79 95 chr3 1945184 1945919 -225578659 - L2 LINE L2 -374 2940 2218 1685 118 33 0 chr3 1945940 1946185 -225578393 + AluSp SINE Alu 39 291 -22 667 276 98 33 chr3 1946588 1947188 -225577390 + L1MC4 LINE L1 7186 7681 -127 * 789 273 28 22 chr3 1947179 1947611 -225576967 - L1MCc LINE L1 -4463 2520 2138 2350 106 0 0 chr3 1947665 1947967 -225576611 - AluSx SINE Alu -10 302 1 1630 263 89 30 chr3 1948014 1948678 -225575900 - L1MCc LINE L1 -4894 1529 998 2120 184 26 26 chr3 1948678 1949102 -225575476 - MSTB LTR MaLR -2 424 1 1630 263 89 30 chr3 1949102 1949284 -225575294 - L1MCc LINE L1 -5425 998 828 388 266 132 60 chr3 1949534 1949898 -225574680 - L1MCc LINE L1 -6011 412 23 228 213 0 0 chr3 1949947 1950008 -225574570 + GA-rich Low_complexity Low_complexity 2 62 0 211 374 84 7 chr3 1950490 1950645 -225573933 + MIR SINE MIR 46 212 -50 26 30 0 0 chr3 1953131 1953164 -225571414 + AT_rich Low_complexity Low_complexity 1 33 0 1925 262 59 23 chr3 1953462 1954034 -225570544 - MLT1E LTR MaLR 0 593 1 27 29 0 0 chr3 1954666 1954700 -225569878 + AT_rich Low_complexity Low_complexity 1 34 0 236 366 0 0 chr3 1955163 1955245 -225569333 - Charlie1 DNA MER1_type -2679 82 1 196 231 0 19 chr3 1955360 1955412 -225569166 + MIR SINE MIR 180 230 -32 530 253 222 0 chr3 1955440 1955634 -225568944 + MIR SINE MIR 5 241 -21 394 267 298 0 chr3 1957421 1957552 -225567026 - MER45A DNA AcHobo -8 170 1 284 0 28 0 chr3 1958808 1958844 -225565734 + (CAAAA)n Simple_repeat Simple_repeat 2 38 0 382 237 21 0 chr3 1959461 1959554 -225565024 + MER117 DNA MER1_type 68 162 -35 273 373 55 39 chr3 1959602 1959721 -225564857 - MIR3 SINE MIR -53 155 31 1464 163 22 117 chr3 1959721 1960133 -225564445 - MLT1A2 LTR MaLR 0 374 2 273 373 55 39 chr3 1960133 1960165 -225564413 - MIR3 SINE MIR -177 31 1 320 235 20 71 chr3 1960818 1960916 -225563662 + MER21B LTR ERV1 12 104 -759 1900 250 120 56 chr3 1960917 1961665 -225562913 + MER21B LTR ERV1 20 815 -48 213 341 32 32 chr3 1962058 1962181 -225562397 + L2 LINE L2 2933 3055 -217 523 306 36 39 chr3 1963090 1963331 -225561247 + MIR SINE MIR 23 262 0 387 262 16 8 chr3 1963576 1963702 -225560876 - L1ME2 LINE L1 0 6164 6038 237 208 57 0 chr3 1963757 1963810 -225560768 - U6 snRNA snRNA -28 79 24 486 151 151 129 chr3 1964346 1964571 -225560007 - MER106A DNA MER1_type -6 230 1 2352 224 20 27 chr3 1964613 1965175 -225559403 + MER74A LTR ERVL 1 558 0 23 0 0 0 chr3 1965665 1965688 -225558890 + AT_rich Low_complexity Low_complexity 1 23 0 271 231 66 55 chr3 1966235 1966326 -225558252 + L2 LINE L2 3221 3312 -1 285 326 0 21 chr3 1966531 1966626 -225557952 - L2 LINE L2 -2 3311 3219 389 232 125 9 chr3 1967448 1967560 -225557018 + MIR SINE MIR 74 198 -64 249 244 58 35 chr3 1968004 1968090 -225556488 - MER103 DNA DNA -10 156 69 1999 149 10 0 chr3 1968206 1968514 -225556064 + AluSq SINE Alu 1 311 -2 1347 237 47 60 chr3 1968539 1968940 -225555638 + MLT1C LTR MaLR 6 402 -65 1880 173 0 3 chr3 1968940 1969246 -225555332 - AluJb SINE Alu -7 305 1 1347 237 47 60 chr3 1969246 1969312 -225555266 + MLT1C LTR MaLR 402 467 0 1551 174 87 0 chr3 1969835 1970100 -225554478 - AluSx SINE Alu -24 288 1 1679 168 30 16 chr3 1970689 1970866 -225553712 - AluJb SINE Alu -4 308 124 333 0 0 0 chr3 1970866 1970903 -225553675 + (TG)n Simple_repeat Simple_repeat 2 38 0 1679 168 30 16 chr3 1970903 1971029 -225553549 - AluJb SINE Alu -188 124 1 340 272 99 74 chr3 1971361 1971644 -225552934 + L1ME4a LINE L1 5611 5900 -221 2391 46 0 10 chr3 1972018 1972359 -225552219 + AluY SINE Alu 1 311 0 1914 147 47 26 chr3 1973534 1973875 -225550703 + MER7A DNA MER2_type 1 346 0 1708 215 52 48 chr3 1974619 1975122 -225549456 + MLT1D LTR MaLR 1 505 0 846 204 25 0 chr3 1975386 1975582 -225548996 - LTR37A LTR ERV1 -8 418 218 284 135 0 0 chr3 1975585 1975637 -225548941 + L1MB8 LINE L1 6127 6178 0 346 281 31 62 chr3 1975637 1975829 -225548749 - LTR37A LTR ERV1 -186 240 55 2326 291 105 32 chr3 1975909 1977550 -225547028 + L2 LINE L2 1266 3313 0 22 0 0 0 chr3 1977550 1977572 -225547006 + AT_rich Low_complexity Low_complexity 1 22 0 220 321 44 57 chr3 1978110 1978269 -225546309 + L2 LINE L2 2934 3090 -182 713 333 17 8 chr3 1978357 1978597 -225545981 + MIR SINE MIR 3 244 -18 280 100 0 50 chr3 1980110 1980170 -225544408 + (GGGAA)n Simple_repeat Simple_repeat 4 60 0 318 266 53 21 chr3 1980392 1980486 -225544092 + MIR SINE MIR 28 124 -138 1262 249 34 25 chr3 1980486 1980811 -225543767 - MER45C DNA AcHobo 0 953 626 540 141 12 0 chr3 1982028 1982113 -225542465 - AluJ/FLAM SINE Alu -226 86 1 313 301 49 42 chr3 1982148 1982291 -225542287 + L1MC4 LINE L1 6559 6702 -1340 1210 254 90 95 chr3 1983234 1984056 -225540522 - HAL1b LINE L1 0 1348 524 2483 81 0 3 chr3 1984056 1984365 -225540213 - AluSq SINE Alu -5 308 1 1210 254 90 95 chr3 1984365 1984529 -225540049 - HAL1b LINE L1 -824 524 361 1396 196 28 35 chr3 1984529 1984814 -225539764 - AluJo SINE Alu -19 283 1 1210 254 90 95 chr3 1984814 1985098 -225539480 - HAL1b LINE L1 -987 361 83 291 353 0 17 chr3 1986360 1986476 -225538102 - MIR SINE MIR -62 146 33 276 367 39 8 chr3 1986585 1986713 -225537865 + MIR3 SINE MIR 7 138 -70 200 83 0 28 chr3 1986713 1986749 -225537829 + (ATG)n Simple_repeat Simple_repeat 2 36 0 21 36 0 0 chr3 1986799 1986827 -225537751 + AT_rich Low_complexity Low_complexity 1 28 0 421 251 127 59 chr3 1987166 1987644 -225536934 - MER34B LTR ERV1 0 565 6 322 261 12 0 chr3 1988349 1988443 -225536135 + L1MC4 LINE L1 6443 6545 -1458 525 277 63 29 chr3 1988505 1988607 -225535971 + L1MC4 LINE L1 6716 6813 -1229 203 0 0 36 chr3 1988607 1988635 -225535943 + (TTTTG)n Simple_repeat Simple_repeat 2 28 0 525 277 63 29 chr3 1988635 1988770 -225535808 + L1MC4 LINE L1 6813 6961 -1081 480 258 42 42 chr3 1988894 1989084 -225535494 + L1MC4a LINE L1 7180 7369 -439 601 233 114 52 chr3 1989355 1989489 -225535089 + L1MC4 LINE L1 7426 7550 -324 1459 198 50 3 chr3 1989489 1989787 -225534791 + AluJb SINE Alu 1 312 0 601 233 114 52 chr3 1989787 1989829 -225534749 + L1MC4 LINE L1 7550 7588 -286 1592 177 69 0 chr3 1989829 1990117 -225534461 + AluJo SINE Alu 1 308 -4 601 233 114 52 chr3 1990117 1990344 -225534234 + L1MC4 LINE L1 7588 7873 -1 603 236 15 64 chr3 1990647 1990850 -225533728 - L1ME3 LINE L1 -30 6132 5940 210 67 67 0 chr3 1990904 1990949 -225533629 + GA-rich Low_complexity Low_complexity 1 48 0 247 111 19 19 chr3 1990977 1991031 -225533547 + (GAAAA)n Simple_repeat Simple_repeat 4 57 0 1305 99 42 0 chr3 1992459 1992651 -225531927 - L1PA13 LINE L1 -1 6162 5963 21 0 0 0 chr3 1992826 1992847 -225531731 + AT_rich Low_complexity Low_complexity 1 21 0 353 250 46 46 chr3 1992997 1993105 -225531473 + MIR3 SINE MIR 54 161 -47 209 393 14 48 chr3 1993639 1993784 -225530794 - MIR SINE MIR -73 189 50 237 209 233 12 chr3 1993803 1993889 -225530689 - MER5A DNA MER1_type -8 181 77 2274 151 0 34 chr3 1993890 1994327 -225530251 + L1MA6 LINE L1 5878 6299 -1 213 94 0 0 chr3 1994425 1994457 -225530121 + (CA)n Simple_repeat Simple_repeat 1 32 0 2153 122 7 7 chr3 1994499 1994803 -225529775 - AluSx SINE Alu -8 304 1 831 167 0 0 chr3 1995803 1995935 -225528643 - AluSq/x SINE Alu -180 132 1 1209 245 42 49 chr3 1996115 1996597 -225527981 + MER39 LTR ERV1 1 687 -20 263 203 14 0 chr3 1998766 1998835 -225525743 + (CATA)n Simple_repeat Simple_repeat 3 72 0 213 363 24 24 chr3 1999933 2000101 -225524477 + MIR SINE MIR 3 170 -92 403 344 42 47 chr3 2000340 2000532 -225524046 - MIR SINE MIR -52 210 20 889 197 57 0 chr3 2000759 2000952 -225523626 + LTR16A1 LTR ERVL 254 457 0 224 295 152 0 chr3 2001390 2001495 -225523083 + MIR3 SINE MIR 63 183 -25 768 256 67 0 chr3 2002257 2002452 -225522126 - MIR SINE MIR -27 235 28 2483 69 0 3 chr3 2003210 2003515 -225521063 + AluSg SINE Alu 1 304 -6 276 340 60 0 chr3 2003828 2003928 -225520650 - MIR SINE MIR -100 162 57 22 0 0 0 chr3 2003953 2003975 -225520603 + AT_rich Low_complexity Low_complexity 1 22 0 30 27 0 0 chr3 2005192 2005229 -225519349 + AT_rich Low_complexity Low_complexity 1 37 0 1037 159 20 0 chr3 2005332 2005527 -225519051 + L1PB1 LINE L1 2 200 -6663 12330 130 86 15 chr3 2005529 2006557 -225518021 + L1PB1 LINE L1 636 1590 -5272 2357 87 0 3 chr3 2006557 2006855 -225517723 + AluY SINE Alu 3 299 -12 12330 130 86 15 chr3 2006855 2008600 -225515978 + L1PB1 LINE L1 1590 3605 -3257 1139 231 8 0 chr3 2008598 2008866 -225515712 + L1PB1 LINE L1 3907 4176 -2686 * 5570 187 3 5 chr3 2008854 2010470 -225514108 + L1PB1 LINE L1 4785 6397 -470 1704 110 54 156 chr3 2010495 2010994 -225513584 - LTR7 LTR ERV1 -2 448 1 4585 59 5 10 chr3 2010994 2011605 -225512973 - HERVH LTR ERV1 0 7713 7106 1027 136 6 12 chr3 2011597 2011759 -225512819 - HERVH LTR ERV1 -4061 3652 3492 * 964 127 7 0 chr3 2011749 2011899 -225512679 - HERVH LTR ERV1 -4423 3290 3140 * 13507 133 24 23 chr3 2011878 2014326 -225510252 - HERVH LTR ERV1 -4718 2995 437 505 84 0 0 chr3 2014306 2014377 -225510201 - HERVH LTR ERV1 -7642 71 1 * 1958 113 57 104 chr3 2014379 2014849 -225509729 - LTR7 LTR ERV1 -2 448 1 3094 101 28 7 chr3 2014849 2014952 -225509626 + L1PB1 LINE L1 6393 6492 -375 1038 39 29 15 chr3 2014952 2015161 -225509417 + (TA)n Simple_repeat Simple_repeat 1 212 0 3094 101 28 7 chr3 2015161 2015518 -225509060 + L1PB1 LINE L1 6492 6867 0 1438 111 65 0 chr3 2015644 2015860 -225508718 + MER30 DNA MER1_type 1 230 0 1567 262 89 46 chr3 2015895 2016726 -225507852 - L1ME3A LINE L1 -16 6154 5288 296 291 70 12 chr3 2016773 2016945 -225507633 - L1ME3A LINE L1 -926 5220 5039 186 43 0 0 chr3 2016989 2017012 -225507566 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 420 262 40 24 chr3 2018256 2018382 -225506196 - MIR SINE MIR -74 188 61 1964 115 0 0 chr3 2018382 2018642 -225505936 + AluSq SINE Alu 21 280 -33 363 89 0 0 chr3 2018642 2018698 -225505880 + AluSp/q SINE Alu 245 300 -3 185 349 32 16 chr3 2018698 2018761 -225505817 - MIR SINE MIR -186 76 13 554 229 179 0 chr3 2018766 2018906 -225505672 - MER5A DNA MER1_type -1 188 24 210 190 177 76 chr3 2019102 2019181 -225505397 - L2 LINE L2 0 3313 3227 199 54 54 36 chr3 2019738 2019794 -225504784 + T-rich Low_complexity Low_complexity 6 62 0 23 0 0 0 chr3 2019936 2019959 -225504619 + AT_rich Low_complexity Low_complexity 1 23 0 244 268 0 18 chr3 2020004 2020060 -225504518 - MIR SINE MIR -161 101 47 2048 332 60 34 chr3 2020279 2021502 -225503076 + L2 LINE L2 11 1264 -2050 300 267 83 25 chr3 2022197 2022317 -225502261 - L1ME4a LINE L1 -48 6073 5947 1379 176 114 29 chr3 2023412 2023685 -225500893 - MER1B DNA MER1_type -43 296 1 21 36 0 0 chr3 2023849 2023877 -225500701 + AT_rich Low_complexity Low_complexity 1 28 0 277 244 100 91 chr3 2024008 2024238 -225500340 - L1ME3A LINE L1 -154 6016 5785 297 359 31 8 chr3 2024331 2024459 -225500119 - L2 LINE L2 0 3272 3142 967 264 136 40 chr3 2024693 2025143 -225499435 - MLT1H LTR MaLR -54 495 3 261 83 0 0 chr3 2025241 2025277 -225499301 + (GAAA)n Simple_repeat Simple_repeat 1 36 0 865 195 6 18 chr3 2025500 2025669 -225498909 - FRAM SINE Alu -14 162 1 188 33 0 33 chr3 2025669 2025699 -225498879 + (TTTTA)n Simple_repeat Simple_repeat 2 30 0 1485 213 0 11 chr3 2025704 2025990 -225498588 - AluJb SINE Alu -24 288 6 702 313 175 18 chr3 2026081 2026538 -225498040 - L2 LINE L2 -684 2630 2102 327 345 84 20 chr3 2026555 2027045 -225497533 - L1ME4a LINE L1 -297 5824 5304 764 211 155 0 chr3 2028720 2028914 -225495664 - MER58A DNA MER1_type 0 224 1 366 268 192 27 chr3 2028950 2029174 -225495404 - MIR SINE MIR 0 262 2 23 33 0 0 chr3 2029316 2029346 -225495232 + AT_rich Low_complexity Low_complexity 1 30 0 317 279 91 71 chr3 2029429 2029627 -225494951 + MIR SINE MIR 19 212 -50 202 182 0 0 chr3 2029677 2029710 -225494868 + (CA)n Simple_repeat Simple_repeat 2 34 0 194 352 114 0 chr3 2029832 2029920 -225494658 - L3b LINE CR1 -27 1556 1459 2605 103 16 0 chr3 2030411 2030780 -225493798 + THE1C LTR MaLR 1 375 0 313 286 24 0 chr3 2030921 2031005 -225493573 + L2 LINE L2 3222 3307 -6 508 361 47 29 chr3 2031036 2031377 -225493201 - LTR16C LTR ERVL -8 483 137 291 291 60 46 chr3 2032484 2032635 -225491943 + MIR SINE MIR 5 157 -105 229 218 11 35 chr3 2032697 2032784 -225491794 + (TAAA)n Simple_repeat Simple_repeat 1 85 0 409 302 63 6 chr3 2033191 2033350 -225491228 - MLT1F LTR MaLR -374 168 1 438 335 182 23 chr3 2033500 2033939 -225490639 - L2 LINE L2 -1 3312 2804 235 182 55 0 chr3 2033997 2034052 -225490526 - L2 LINE L2 -6 3307 3250 22 0 0 0 chr3 2034375 2034397 -225490181 + AT_rich Low_complexity Low_complexity 1 22 0 3506 142 39 32 chr3 2034397 2035087 -225489491 - L1MA7 LINE L1 0 6291 5597 324 283 75 12 chr3 2035650 2035823 -225488755 + MER113 DNA MER1_type? 34 217 -304 690 130 290 0 chr3 2036774 2036912 -225487666 - AluSc SINE Alu -5 304 127 289 301 0 32 chr3 2037175 2037268 -225487310 + MIR SINE MIR 78 167 -95 25 0 0 0 chr3 2037525 2037550 -225487028 + AT_rich Low_complexity Low_complexity 1 25 0 2575 50 0 0 chr3 2038150 2038449 -225486129 + AluY SINE Alu 1 299 -12 984 172 0 0 chr3 2038658 2038809 -225485769 + FRAM SINE Alu 1 150 -26 554 314 58 36 chr3 2038910 2039133 -225485445 - MIR SINE MIR -27 235 8 194 286 0 0 chr3 2040653 2040702 -225483876 + MIR SINE MIR 2 50 -212 1345 175 114 25 chr3 2040717 2040997 -225483581 - AluSx SINE Alu -2 310 6 2422 135 3 3 chr3 2041720 2042082 -225482496 + THE1B LTR MaLR 2 363 -1 229 239 149 30 chr3 2042150 2042217 -225482361 + MIR SINE MIR 112 186 -76 24 32 0 0 chr3 2043978 2044009 -225480569 + AT_rich Low_complexity Low_complexity 1 31 0 196 333 0 13 chr3 2044654 2044729 -225479849 - MIR SINE MIR -21 241 168 181 323 15 0 chr3 2045383 2045448 -225479130 + L2 LINE L2 2171 2236 -1078 1915 139 4 0 chr3 2045453 2045726 -225478852 - MER1A DNA MER1_type -194 335 62 190 371 14 0 chr3 2045763 2045833 -225478745 + L2 LINE L2 2302 2372 -942 300 310 41 16 chr3 2046555 2046757 -225477821 - MLT1J LTR MaLR -1 510 241 310 252 126 17 chr3 2046877 2046996 -225477582 - MLT1J LTR MaLR -371 140 9 2188 132 0 3 chr3 2047172 2047483 -225477095 - AluSx SINE Alu 0 312 3 255 200 0 0 chr3 2047528 2047573 -225477005 - MIR SINE MIR -121 141 97 332 302 75 0 chr3 2047575 2047681 -225476897 + L3 LINE CR1 1463 1576 -1 369 336 69 18 chr3 2048567 2048711 -225475867 + MIR SINE MIR 10 170 -92 180 0 0 0 chr3 2048711 2048731 -225475847 + (TTTG)n Simple_repeat Simple_repeat 3 22 0 369 336 69 18 chr3 2048731 2048803 -225475775 + MIR SINE MIR 170 237 -25 184 182 36 73 chr3 2048830 2048885 -225475693 - L3b LINE CR1 -115 1468 1416 641 293 5 40 chr3 2049245 2049467 -225475111 - MIR SINE MIR -40 222 9 23 0 0 0 chr3 2050042 2050065 -225474513 + AT_rich Low_complexity Low_complexity 1 23 0 2300 106 0 0 chr3 2050284 2050587 -225473991 - AluSx SINE Alu -7 305 3 974 258 57 8 chr3 2050628 2050876 -225473702 - MLT1E3 LTR MaLR -194 430 171 403 276 118 0 chr3 2050904 2051031 -225473547 - MLT1E3 LTR MaLR -505 149 8 1801 118 92 0 chr3 2051289 2051561 -225473017 - AluSg SINE Alu -12 298 2 243 0 0 0 chr3 2051808 2051835 -225472743 + (CA)n Simple_repeat Simple_repeat 2 28 0 1743 124 70 4 chr3 2052806 2053079 -225471499 - AluSx SINE Alu -21 291 1 21 36 0 0 chr3 2053087 2053115 -225471463 + AT_rich Low_complexity Low_complexity 1 28 0 2175 102 3 0 chr3 2053542 2053857 -225470721 + AluSq SINE Alu 1 313 0 1869 299 120 15 chr3 2054356 2055359 -225469219 - L2 LINE L2 -4 3309 2185 205 318 0 0 chr3 2055358 2055421 -225469157 - MIR SINE MIR -16 246 184 * 3370 84 8 73 chr3 2056007 2056022 -225468556 + L1M1 LINE L1 3535 3549 -4016 3086 57 0 86 chr3 2056022 2056500 -225468078 - L1PA7 LINE L1 0 6154 5718 3370 84 8 73 chr3 2056500 2057047 -225467531 + L1M1 LINE L1 3549 4062 -3503 788 267 37 5 chr3 2057047 2057234 -225467344 - MER20 DNA MER1_type -26 193 1 2216 164 57 33 chr3 2057393 2057849 -225466729 + MER41B LTR ERV1 113 579 -56 286 198 0 99 chr3 2057826 2057907 -225466671 + MER66B LTR ERV1 403 475 -11 * 2372 74 0 10 chr3 2059486 2059797 -225464781 - AluY SINE Alu -2 309 2 821 259 0 0 chr3 2059815 2060004 -225464574 + MER5A DNA MER1_type 1 189 0 3678 119 15 0 chr3 2060339 2060885 -225463693 - MER41A LTR ERV1 0 554 1 610 324 86 47 chr3 2061782 2062270 -225462308 - L3 LINE CR1 -6 1571 1065 307 361 32 32 chr3 2062276 2062431 -225462147 + MER5A DNA MER1_type 35 189 0 190 197 45 0 chr3 2063041 2063107 -225461471 + CT-rich Low_complexity Low_complexity 4 72 0 1913 265 67 8 chr3 2063756 2064401 -225460177 + L1ME2 LINE L1 5465 6147 -17 825 142 8 15 chr3 2064796 2064930 -225459648 + FLAM_C SINE Alu 1 133 0 216 0 0 0 chr3 2065389 2065413 -225459165 + (TTTTG)n Simple_repeat Simple_repeat 3 26 0 21 0 0 0 chr3 2066789 2066810 -225457768 + AT_rich Low_complexity Low_complexity 1 21 0 24 67 0 0 chr3 2066953 2066998 -225457580 + AT_rich Low_complexity Low_complexity 1 45 0 316 283 50 8 chr3 2067290 2067410 -225457168 + MER46C DNA MER2_type 85 209 -129 186 43 0 0 chr3 2067455 2067478 -225457100 + (T)n Simple_repeat Simple_repeat 1 23 0 207 0 0 0 chr3 2067821 2067844 -225456734 + (TTTTTG)n Simple_repeat Simple_repeat 3 25 0 22 0 0 0 chr3 2067853 2067875 -225456703 + AT_rich Low_complexity Low_complexity 1 22 0 289 346 163 0 chr3 2068510 2068663 -225455915 - MER5A DNA MER1_type -2 187 10 276 306 36 27 chr3 2069415 2069526 -225455052 - MIR SINE MIR -124 138 27 335 295 94 62 chr3 2069551 2069775 -225454803 + MIR SINE MIR 19 249 -13 2120 88 0 34 chr3 2069808 2070104 -225454474 - AluY SINE Alu -20 291 6 962 149 11 0 chr3 2070273 2070448 -225454130 + GA-rich Low_complexity Low_complexity 4 180 0 286 256 60 8 chr3 2070509 2070626 -225453952 - L1MC4 LINE L1 -2 8040 7918 21 0 0 0 chr3 2070730 2070751 -225453827 + AT_rich Low_complexity Low_complexity 1 21 0 2334 100 0 0 chr3 2070848 2071158 -225453420 - AluSg SINE Alu 0 310 1 1759 224 47 63 chr3 2072551 2073427 -225451151 - L1MCb LINE L1 -4852 844 333 679 266 5 18 chr3 2073426 2073644 -225450934 - L1MCb LINE L1 -5467 929 715 * 429 321 32 43 chr3 2073870 2074147 -225450431 - L1MCb LINE L1 -6031 365 92 281 297 31 78 chr3 2074159 2074287 -225450291 - MIR SINE MIR -124 138 17 322 311 87 6 chr3 2074369 2074530 -225450048 + L1ME4a LINE L1 5946 6119 -2 2005 114 20 7 chr3 2074535 2074833 -225449745 + AluSg SINE Alu 1 302 -8 184 206 0 0 chr3 2076781 2076815 -225447763 - L2 LINE L2 0 3313 3280 5703 194 38 15 chr3 2077233 2078112 -225446466 - L1MC3 LINE L1 -20 7765 6847 324 0 0 0 chr3 2078112 2078148 -225446430 + (TG)n Simple_repeat Simple_repeat 1 36 0 5703 194 38 15 chr3 2078148 2078541 -225446037 - L1MC3 LINE L1 -938 6847 6464 5650 243 28 20 chr3 2078534 2080505 -225444073 - L1MC3 LINE L1 -744 5402 3586 * 1849 113 4 0 chr3 2080545 2080792 -225443786 + AluSp SINE Alu 1 248 -65 187 213 25 0 chr3 2080939 2081019 -225443559 + (TA)n Simple_repeat Simple_repeat 1 82 0 610 197 9 4 chr3 2081043 2081285 -225443293 + (TA)n Simple_repeat Simple_repeat 1 243 0 438 271 76 70 chr3 2081483 2081811 -225442767 - L1ME4a LINE L1 -237 5884 5555 186 43 0 0 chr3 2082014 2082037 -225442541 + (TATATG)n Simple_repeat Simple_repeat 2 24 0 412 342 71 29 chr3 2082446 2082686 -225441892 + MIR SINE MIR 3 252 -10 25 0 0 0 chr3 2082874 2082899 -225441679 + AT_rich Low_complexity Low_complexity 1 25 0 259 226 130 75 chr3 2083104 2083250 -225441328 - MIR SINE MIR -13 249 96 1448 168 80 77 chr3 2083390 2083742 -225440836 - MLT1A1 LTR MaLR -2 363 11 271 255 0 0 chr3 2085253 2085304 -225439274 + L2 LINE L2 3212 3262 -10 25 31 0 0 chr3 2085732 2085764 -225438814 + AT_rich Low_complexity Low_complexity 1 32 0 377 250 37 9 chr3 2085781 2085889 -225438689 - MIR SINE MIR -24 238 128 2732 123 24 7 chr3 2085893 2086309 -225438269 - MSTA LTR MaLR -1 427 5 526 310 88 52 chr3 2087066 2087569 -225437009 - MLT1K LTR MaLR -2 586 66 469 88 25 12 chr3 2087761 2087841 -225436737 + (GAAA)n Simple_repeat Simple_repeat 4 84 0 654 315 63 48 chr3 2088192 2088655 -225435923 - LTR16C LTR ERVL -21 470 1 519 101 13 0 chr3 2088868 2088947 -225435631 + MADE1 DNA Mariner 1 80 0 396 0 0 0 chr3 2089527 2089571 -225435007 + (TAAAA)n Simple_repeat Simple_repeat 2 45 0 650 280 100 22 chr3 2090908 2091179 -225433399 + L2 LINE L2 3020 3311 -2 273 57 0 0 chr3 2092322 2092357 -225432221 + (TG)n Simple_repeat Simple_repeat 2 36 0 228 314 0 0 chr3 2092935 2093005 -225431573 - MIR SINE MIR -142 120 51 279 345 176 0 chr3 2095725 2095890 -225428688 - MIR SINE MIR -3 259 66 201 74 0 0 chr3 2095903 2095930 -225428648 + (CAT)n Simple_repeat Simple_repeat 2 28 0 702 324 8 32 chr3 2095939 2096186 -225428392 - MIR SINE MIR -10 252 12 329 297 141 64 chr3 2097568 2097945 -225426633 - MLT1L LTR MaLR -8 503 98 308 145 0 16 chr3 2098748 2098810 -225425768 + (TA)n Simple_repeat Simple_repeat 1 61 0 250 242 10 10 chr3 2098847 2098946 -225425632 + (TA)n Simple_repeat Simple_repeat 2 100 0 423 289 22 33 chr3 2099167 2099347 -225425231 - MIR SINE MIR 0 262 85 21 0 0 0 chr3 2099640 2099661 -225424917 + AT_rich Low_complexity Low_complexity 1 21 0 390 333 13 19 chr3 2100518 2100677 -225423901 - Charlie8 DNA MER1_type -2147 270 113 288 315 148 9 chr3 2100933 2101041 -225423537 + L2 LINE L2 3150 3272 0 591 213 0 0 chr3 2102161 2102297 -225422281 + GA-rich Low_complexity Low_complexity 3 138 0 190 398 54 0 chr3 2103483 2103576 -225421002 - MIR3 SINE MIR -96 112 15 237 326 12 12 chr3 2103961 2104047 -225420531 + MIR3 SINE MIR 13 98 -110 22 0 0 0 chr3 2104064 2104086 -225420492 + AT_rich Low_complexity Low_complexity 1 22 0 362 299 28 19 chr3 2104388 2104495 -225420083 + L2 LINE L2 3150 3257 -15 22 70 0 0 chr3 2104505 2104548 -225420030 + AT_rich Low_complexity Low_complexity 1 43 0 351 238 95 0 chr3 2104620 2104704 -225419874 - L2 LINE L2 -1 3271 3180 304 322 50 3 chr3 2104757 2104869 -225419709 + MIR SINE MIR 31 143 -73 1601 165 0 63 chr3 2105440 2105773 -225418805 + AluJo SINE Alu 1 312 0 206 32 32 0 chr3 2105855 2105886 -225418692 + (TAAAA)n Simple_repeat Simple_repeat 1 32 0 196 329 68 0 chr3 2105920 2105993 -225418585 - MIR SINE MIR -1 261 184 182 287 194 19 chr3 2106639 2106747 -225417831 + MIR SINE MIR 17 143 -65 287 333 95 0 chr3 2107977 2108103 -225416475 - MER5A DNA MER1_type 0 189 52 186 311 66 66 chr3 2107995 2108146 -225416432 + MER5A DNA MER1_type 37 187 -2 * 32 0 0 0 chr3 2108611 2108643 -225415935 + AT_rich Low_complexity Low_complexity 1 32 0 364 330 98 25 chr3 2109688 2109891 -225414687 - MIR SINE MIR -37 225 8 21 0 0 0 chr3 2110880 2110901 -225413677 + AT_rich Low_complexity Low_complexity 1 21 0 225 0 0 0 chr3 2111818 2111843 -225412735 + (TTTG)n Simple_repeat Simple_repeat 4 28 0 1949 120 0 0 chr3 2111846 2112121 -225412457 - AluSg SINE Alu -35 275 1 347 182 13 39 chr3 2112550 2112627 -225411951 + Tigger2 DNA MER2_type 2 76 -2642 * 2466 157 25 11 chr3 2112606 2113045 -225411533 + Tigger2 DNA MER2_type 2273 2717 -1 386 299 92 51 chr3 2113375 2113592 -225410986 - MIR SINE MIR -18 244 19 182 296 0 0 chr3 2113704 2113748 -225410830 + MIR3 SINE MIR 8 51 -157 1986 142 3 0 chr3 2114813 2115109 -225409469 - AluSx SINE Alu -15 297 1 1498 160 52 119 chr3 2115962 2116425 -225408153 + MSTB1 LTR MaLR 1 432 0 484 339 37 45 chr3 2117740 2117982 -225406596 - MIR SINE MIR -16 246 7 204 179 0 0 chr3 2118271 2118310 -225406268 + (CATA)n Simple_repeat Simple_repeat 2 40 0 454 311 41 15 chr3 2118420 2118616 -225405962 + MIR SINE MIR 51 251 -11 25 75 0 0 chr3 2119700 2119753 -225404825 + AT_rich Low_complexity Low_complexity 1 53 0 474 248 33 62 chr3 2124176 2124386 -225400192 + L2 LINE L2 3109 3312 -1 547 322 22 6 chr3 2127108 2127291 -225397287 - MIR SINE MIR -13 249 64 469 248 132 45 chr3 2127566 2127832 -225396746 - L1ME2 LINE L1 -9 6155 5867 22 0 0 0 chr3 2127852 2127874 -225396704 + AT_rich Low_complexity Low_complexity 1 22 0 1645 187 42 3 chr3 2128481 2128765 -225395813 + AluJo SINE Alu 1 295 -17 260 240 80 0 chr3 2129586 2129661 -225394917 - HAL1 LINE L1 -477 2030 1950 969 313 93 8 chr3 2129669 2130151 -225394427 - HAL1 LINE L1 -726 1781 1259 180 210 37 0 chr3 2130208 2130289 -225394289 + (TA)n Simple_repeat Simple_repeat 1 84 0 951 279 114 30 chr3 2130320 2130758 -225393820 + L2 LINE L2 2150 2624 -690 423 184 26 0 chr3 2130767 2130843 -225393735 + MER20 DNA MER1_type 9 86 -133 241 364 0 0 chr3 2131004 2131081 -225393497 + L2 LINE L2 2681 2757 -557 524 311 97 25 chr3 2131945 2132780 -225391798 + L1MEc LINE L1 786 1680 -4716 4418 186 14 44 chr3 2132793 2133773 -225390805 - L1MA9 LINE L1 -30 6282 5332 696 236 42 23 chr3 2134765 2135028 -225389550 - L1MC5 LINE L1 -18 7943 7676 29 0 0 0 chr3 2135341 2135370 -225389208 + AT_rich Low_complexity Low_complexity 1 29 0 331 67 0 0 chr3 2135371 2135416 -225389162 + MADE1 DNA Mariner 36 80 0 315 303 91 51 chr3 2135689 2135864 -225388714 + MER5A DNA MER1_type 7 188 -1 1656 134 49 37 chr3 2136718 2137046 -225387532 - L1MA7 LINE L1 -4 6287 5956 4616 202 107 47 chr3 2137091 2138637 -225385941 + MER45R DNA AcHobo 1 1580 -1 238 349 0 23 chr3 2139095 2139181 -225385397 + L2 LINE L2 3229 3312 -1 254 238 138 0 chr3 2139831 2139911 -225384667 - L1MC5 LINE L1 -397 7564 7474 363 42 0 0 chr3 2139929 2139977 -225384601 - L1PA3 LINE L1 -3 6152 6105 1175 47 0 0 chr3 2139977 2140125 -225384453 + L1PA4 LINE L1 5930 6077 -78 1988 142 10 0 chr3 2140265 2140568 -225384010 + AluSx SINE Alu 6 311 -1 31 82 0 0 chr3 2143481 2143554 -225381024 + AT_rich Low_complexity Low_complexity 1 73 0 269 306 189 0 chr3 2144644 2144755 -225379823 - MIR SINE MIR -57 151 20 221 273 0 0 chr3 2148198 2148253 -225376325 + L2 LINE L2 3254 3308 -5 265 344 164 0 chr3 2148311 2148433 -225376145 - MIR SINE MIR -14 248 107 348 239 182 115 chr3 2148926 2149080 -225375498 + MER58A DNA MER1_type 1 174 -2246 1145 124 31 26 chr3 2149080 2149274 -225375304 + L1PA16 LINE L1 5962 6156 -10 348 239 182 115 chr3 2149274 2149328 -225375250 + MER58A DNA MER1_type 174 223 -1 645 295 18 5 chr3 2150279 2150496 -225374082 - MER58A DNA MER1_type -3 221 2 22 0 0 0 chr3 2151789 2151811 -225372767 + AT_rich Low_complexity Low_complexity 1 22 0 2173 181 17 67 chr3 2153239 2153715 -225370863 - MER66A LTR ERV1 0 478 27 676 152 29 14 chr3 2153787 2153925 -225370653 + L1MB1 LINE L1 6023 6162 -6 316 316 0 50 chr3 2154314 2154453 -225370125 + L1MC4 LINE L1 6571 6702 -1340 * 328 255 39 39 chr3 2154424 2154526 -225370052 - L1MC4 LINE L1 -1339 6703 6602 338 291 122 35 chr3 2155718 2155948 -225368630 + MIR SINE MIR 1 250 -12 42122 34 25 2 chr3 2157248 2163259 -225361319 + L1PA2 LINE L1 1 6155 0 23 0 0 0 chr3 2163597 2163620 -225360958 + AT_rich Low_complexity Low_complexity 1 23 0 1759 203 30 86 chr3 2164925 2165448 -225359130 - MLT1D LTR MaLR -8 618 1 310 259 99 15 chr3 2165456 2165587 -225358991 - MIR SINE MIR -15 247 106 392 287 64 35 chr3 2166092 2166311 -225358267 + MIR SINE MIR 20 245 -17 270 339 68 41 chr3 2166773 2166994 -225357584 - L2 LINE L2 -2 3311 3085 189 277 21 0 chr3 2167059 2167106 -225357472 - L2 LINE L2 -342 2971 2924 406 289 87 0 chr3 2169417 2169521 -225355057 - L2 LINE L2 -2 3270 3158 216 350 82 0 chr3 2170014 2170111 -225354467 + MIR3 SINE MIR 56 160 -48 450 323 30 6 chr3 2172501 2172665 -225351913 - MER117 DNA MER1_type 0 197 30 2379 132 3 19 chr3 2175824 2176194 -225348384 - THE1B LTR MaLR 0 364 1 1495 219 148 37 chr3 2176299 2176331 -225348247 - MLT2B1 LTR ERVL -8 512 485 300 27 0 0 chr3 2176331 2176368 -225348210 + (TG)n Simple_repeat Simple_repeat 1 37 0 1495 219 148 37 chr3 2176368 2176796 -225347782 - MLT2B1 LTR ERVL -35 485 1 22 0 0 0 chr3 2177424 2177446 -225347132 + AT_rich Low_complexity Low_complexity 1 22 0 193 210 40 0 chr3 2177604 2177704 -225346874 + (TTTA)n Simple_repeat Simple_repeat 4 107 0 1725 111 4 12 chr3 2178144 2178388 -225346190 + AluSx SINE Alu 1 242 -70 28 0 0 0 chr3 2178426 2178454 -225346124 + AT_rich Low_complexity Low_complexity 1 28 0 423 0 0 0 chr3 2179454 2179501 -225345077 + (TA)n Simple_repeat Simple_repeat 1 47 0 2211 121 3 6 chr3 2179501 2179814 -225344764 - AluSx SINE Alu 0 312 1 840 131 0 0 chr3 2179986 2180108 -225344470 + FRAM SINE Alu 35 156 -20 331 331 18 18 chr3 2180248 2180411 -225344167 + L2 LINE L2 3147 3309 -4 22 21 0 62 chr3 2180520 2180568 -225344010 + AT_rich Low_complexity Low_complexity 1 45 0 258 32 0 0 chr3 2180657 2180688 -225343890 + (TTTTA)n Simple_repeat Simple_repeat 1 31 0 2247 56 3 0 chr3 2180688 2180973 -225343605 - L1PA8 LINE L1 -24 6148 5863 25 0 0 0 chr3 2181021 2181046 -225343532 + AT_rich Low_complexity Low_complexity 1 25 0 320 296 68 31 chr3 2181666 2181828 -225342750 + MER102a DNA MER1_type 163 330 0 513 315 211 28 chr3 2182309 2182974 -225341604 - L2 LINE L2 -168 3104 2304 180 260 6 172 chr3 2182974 2183143 -225341435 + MIR3 SINE MIR 3 143 -65 2350 159 32 34 chr3 2183346 2183850 -225340728 + L1MA8 LINE L1 5785 6287 -4 346 308 147 53 chr3 2185843 2186278 -225338300 + L2 LINE L2 2826 3301 -12 30 69 0 0 chr3 2186302 2186360 -225338218 + AT_rich Low_complexity Low_complexity 1 58 0 2647 112 3 3 chr3 2186590 2186965 -225337613 - THE1C LTR MaLR 0 375 1 309 270 11 11 chr3 2187019 2187108 -225337470 - MER117 DNA MER1_type -107 90 2 1127 221 69 1 chr3 2187262 2187581 -225336997 + MLT1D LTR MaLR 128 505 0 271 217 11 11 chr3 2187718 2187810 -225336768 + (TA)n Simple_repeat Simple_repeat 2 93 0 397 310 48 7 chr3 2188392 2188537 -225336041 + MIR SINE MIR 66 216 -46 387 248 59 20 chr3 2189629 2189782 -225334796 - MER103 DNA DNA -2 164 6 198 103 0 0 chr3 2190609 2190638 -225333940 + (TA)n Simple_repeat Simple_repeat 2 30 0 429 274 48 43 chr3 2190640 2190826 -225333752 - MIR SINE MIR -70 192 6 621 287 18 0 chr3 2190836 2191000 -225333578 + LTR33 LTR ERVL 1 167 -354 899 301 57 57 chr3 2191123 2191672 -225332906 + MLT1H LTR MaLR 1 549 0 271 360 51 22 chr3 2191930 2192108 -225332470 - MIR SINE MIR -78 184 2 377 377 34 17 chr3 2192752 2192988 -225331590 + MIR SINE MIR 23 262 0 366 139 0 0 chr3 2193226 2193298 -225331280 + (TG)n Simple_repeat Simple_repeat 1 72 0 323 305 103 33 chr3 2194322 2194535 -225330043 - MIR SINE MIR -31 231 4 283 357 45 9 chr3 2194756 2194868 -225329710 - MIR SINE MIR -115 147 32 241 326 34 11 chr3 2195290 2195379 -225329199 - L2 LINE L2 -190 3082 2992 180 278 188 21 chr3 2195557 2195701 -225328877 - MIR SINE MIR -46 216 49 183 42 0 0 chr3 2196332 2196356 -225328222 + (TC)n Simple_repeat Simple_repeat 2 25 0 1751 181 7 13 chr3 2196356 2196655 -225327923 - AluJb SINE Alu -13 299 3 252 267 12 23 chr3 2196690 2196776 -225327802 - MIR SINE MIR 0 262 178 257 314 6 70 chr3 2196828 2196930 -225327648 + MIR SINE MIR 8 98 -164 3190 158 10 46 chr3 2196930 2197164 -225327414 - MER6A DNA MER2_type -260 605 364 1704 166 3 28 chr3 2197164 2197454 -225327124 + AluJo SINE Alu 1 283 -29 3190 158 10 46 chr3 2197454 2197846 -225326732 - MER6A DNA MER2_type -501 364 2 257 314 6 70 chr3 2197846 2197899 -225326679 + MIR SINE MIR 98 153 -109 281 378 66 42 chr3 2198400 2198641 -225325937 + L3b LINE CR1 1317 1563 -20 299 333 38 50 chr3 2200042 2200201 -225324377 - MIR3 SINE MIR -25 183 27 209 269 90 67 chr3 2200864 2200998 -225323580 + MIR SINE MIR 126 262 0 249 338 0 0 chr3 2201117 2201194 -225323384 + MIR3 SINE MIR 125 201 -7 2286 29 11 4 chr3 2202201 2202559 -225322019 - AluY SINE Alu 0 360 1 366 264 45 10 chr3 2202889 2203026 -225321552 + L1ME3 LINE L1 3524 3666 -2480 25 31 0 0 chr3 2203052 2203084 -225321494 + AT_rich Low_complexity Low_complexity 1 32 0 2330 268 73 46 chr3 2203118 2203399 -225321179 + L1ME3 LINE L1 3671 3943 -2219 1246 202 102 60 chr3 2203399 2203829 -225320749 + LTR47A LTR ERVL 5 452 0 2330 268 73 46 chr3 2203829 2205501 -225319077 + L1ME3 LINE L1 3943 5705 -457 1796 155 0 20 chr3 2205501 2205798 -225318780 + AluSx SINE Alu 1 291 -21 2330 268 73 46 chr3 2205798 2206269 -225318309 + L1ME3 LINE L1 5705 6162 0 30 27 0 0 chr3 2206618 2206655 -225317923 + AT_rich Low_complexity Low_complexity 1 37 0 193 381 12 0 chr3 2208021 2208105 -225316473 + L2 LINE L2 3188 3272 0 199 250 108 42 chr3 2208358 2208478 -225316100 + L2 LINE L2 2916 3043 -229 3707 192 40 34 chr3 2209876 2210734 -225313844 + MER21B LTR ERV1 1 863 0 311 296 85 63 chr3 2210808 2211207 -225313371 - L1 LINE L1 -2628 3518 3111 750 261 18 0 chr3 2211980 2212145 -225312433 - MER45A DNA AcHobo -10 168 1 546 276 83 11 chr3 2213757 2213938 -225310640 + MIR SINE MIR 36 229 -33 733 228 35 6 chr3 2213988 2214159 -225310419 - MER5B DNA MER1_type 0 178 3 294 303 148 68 chr3 2215291 2215453 -225309125 + MER5A DNA MER1_type 14 188 -1 432 0 0 0 chr3 2215886 2215934 -225308644 + (TG)n Simple_repeat Simple_repeat 2 49 0 1544 91 70 17 chr3 2218042 2218283 -225306295 + L1PA13 LINE L1 5909 6162 -1 23 0 10 0 chr3 2218283 2218352 -225306226 + AT_rich Low_complexity Low_complexity 1 23 0 24 0 0 0 chr3 2218375 2218399 -225306179 + AT_rich Low_complexity Low_complexity 1 24 0 632 294 131 0 chr3 2219344 2219565 -225305013 + MIR SINE MIR 3 252 -10 196 337 24 24 chr3 2219579 2219662 -225304916 - MIR3 SINE MIR -33 175 93 273 298 12 36 chr3 2219735 2219819 -225304759 + MIR SINE MIR 43 124 -84 * 436 270 43 9 chr3 2219812 2219927 -225304651 - MIR SINE MIR -143 119 1 291 269 0 65 chr3 2220079 2220172 -225304406 + MER5B DNA MER1_type 1 87 -91 1111 180 23 59 chr3 2220935 2221220 -225303358 + AluJb SINE Alu 65 340 0 23 0 0 0 chr3 2221303 2221326 -225303252 + AT_rich Low_complexity Low_complexity 1 23 0 3284 135 19 17 chr3 2223615 2224141 -225300437 - MER1A DNA MER1_type 0 527 1 2508 112 99 7 chr3 2225012 2225471 -225299107 + LTR12 LTR ERV1 1 714 0 214 137 39 39 chr3 2225712 2225763 -225298815 + T-rich Low_complexity Low_complexity 2 52 0 1989 140 0 13 chr3 2225862 2226176 -225298402 + AluSx SINE Alu 3 312 0 39 22 0 0 chr3 2226177 2226223 -225298355 + AT_rich Low_complexity Low_complexity 1 46 0 349 318 88 7 chr3 2226280 2226428 -225298150 - MIR SINE MIR -16 246 87 279 193 9 23 chr3 2227505 2227624 -225296954 - MIR SINE MIR -1 261 86 26 0 0 0 chr3 2227700 2227726 -225296852 + AT_rich Low_complexity Low_complexity 1 26 0 540 260 80 35 chr3 2228224 2228424 -225296154 - MLT1K LTR MaLR -4 584 376 12019 55 2 0 chr3 2228751 2231053 -225293525 - L1PA5 LINE L1 -1 6153 3848 380 378 11 6 chr3 2231102 2231282 -225293296 + L2 LINE L2 2599 2779 -535 819 208 26 26 chr3 2231340 2231532 -225293046 - MER3 DNA MER1_type -17 192 1 312 334 93 64 chr3 2231621 2231965 -225292613 + L2 LINE L2 2919 3272 0 21 0 0 0 chr3 2233410 2233431 -225291147 + AT_rich Low_complexity Low_complexity 1 21 0 657 287 0 53 chr3 2233448 2233695 -225290883 - MIR SINE MIR -14 248 15 2285 122 0 0 chr3 2234679 2234991 -225289587 - AluSx SINE Alu 0 312 1 941 292 131 43 chr3 2235021 2235752 -225288826 + HAL1 LINE L1 641 1463 -1044 1392 210 62 25 chr3 2235752 2236109 -225288469 + MLT1A2 LTR MaLR 5 374 0 941 292 131 43 chr3 2236109 2236258 -225288320 + HAL1 LINE L1 1463 1598 -909 1373 188 68 4 chr3 2236708 2237005 -225287573 - AluJo SINE Alu 0 315 2 183 283 0 19 chr3 2237207 2237260 -225287318 + L2 LINE L2 3217 3268 -4 2090 128 0 0 chr3 2237270 2237566 -225287012 + AluSx SINE Alu 2 297 -15 21 0 0 0 chr3 2237890 2237911 -225286667 + AT_rich Low_complexity Low_complexity 1 21 0 444 96 0 60 chr3 2240005 2240088 -225284490 - L1PA13 LINE L1 -11 6152 6075 319 252 31 126 chr3 2240163 2240190 -225284388 - MER5B DNA MER1_type -16 162 134 1829 122 8 0 chr3 2240190 2240444 -225284134 + AluSx SINE Alu 36 291 -21 319 252 31 126 chr3 2240444 2240575 -225284003 - MER5B DNA MER1_type -44 134 19 205 300 10 40 chr3 2240858 2240958 -225283620 - L3b LINE CR1 -172 1411 1315 500 186 0 16 chr3 2242336 2242465 -225282113 + (TATATG)n Simple_repeat Simple_repeat 4 130 0 291 28 0 0 chr3 2242478 2242514 -225282064 + (CA)n Simple_repeat Simple_repeat 2 37 0 991 296 90 35 chr3 2242530 2242963 -225281615 - LTR16B LTR ERVL 0 464 8 2995 214 19 16 chr3 2244150 2244693 -225279885 + L1 LINE L1 4488 5035 -1111 207 0 0 0 chr3 2244693 2244716 -225279862 + (CAAAA)n Simple_repeat Simple_repeat 3 25 0 2995 214 19 16 chr3 2244716 2244915 -225279663 + L1 LINE L1 5035 5232 -914 339 344 46 0 chr3 2245947 2246098 -225278480 - MIR SINE MIR -3 259 102 1819 168 0 19 chr3 2246115 2246430 -225278148 + AluJb SINE Alu 1 309 -3 41645 61 2 0 chr3 2247180 2253314 -225271264 + L1PA5 LINE L1 11 6153 -1 233 113 28 28 chr3 2253592 2253657 -225270921 + (TA)n Simple_repeat Simple_repeat 2 67 0 1632 161 14 14 chr3 2253657 2253942 -225270636 - AluJo SINE Alu -27 285 1 330 143 0 14 chr3 2254278 2254348 -225270230 - L1MB7 LINE L1 -5 6179 6111 408 321 93 12 chr3 2254387 2254633 -225269945 - L1ME4a LINE L1 -257 5864 5599 222 37 0 0 chr3 2254721 2254748 -225269830 + (CA)n Simple_repeat Simple_repeat 2 28 0 482 46 15 0 chr3 2254750 2254815 -225269763 + (TAGA)n Simple_repeat Simple_repeat 3 68 0 247 321 83 46 chr3 2254934 2255043 -225269535 + MIR3 SINE MIR 3 115 -93 626 251 79 100 chr3 2255056 2255447 -225269131 + MSTD LTR MaLR 1 383 -13 372 210 0 0 chr3 2255606 2255687 -225268891 + (TA)n Simple_repeat Simple_repeat 1 81 0 1826 149 17 3 chr3 2255687 2255988 -225268590 - AluJb SINE Alu -7 305 1 289 324 101 21 chr3 2256413 2256889 -225267689 - L1M4 LINE L1 -2412 3734 3221 321 221 72 171 chr3 2257202 2257457 -225267121 - L1M4 LINE L1 -3235 2911 2727 1917 125 3 14 chr3 2257457 2257753 -225266825 + AluSx SINE Alu 3 295 -17 321 221 72 171 chr3 2257753 2257994 -225266584 - L1M4 LINE L1 -3419 2727 2464 642 186 57 52 chr3 2258004 2258198 -225266380 - MER63 DNA MER1_type -1 1061 867 332 328 16 0 chr3 2258198 2258326 -225266252 + L1MC4 LINE L1 7307 7436 -606 600 228 11 97 chr3 2258430 2258760 -225265818 - L1ME4a LINE L1 -702 5464 5165 972 278 126 68 chr3 2258794 2259859 -225264719 - L1MC4a LINE L1 -1011 6797 5671 1670 238 106 14 chr3 2260546 2261058 -225263520 + MLT1F1 LTR MaLR 9 567 0 2288 236 75 38 chr3 2261155 2261840 -225262738 - MER21B LTR ERV1 -54 809 100 314 147 44 0 chr3 2261966 2262034 -225262544 + MER58 DNA MER1_type 2288 2358 -62 5345 133 10 0 chr3 2262041 2263298 -225261280 - L1PB3 LINE L1 0 6154 4887 29 28 0 0 chr3 2263518 2263554 -225261024 + AT_rich Low_complexity Low_complexity 1 36 0 393 290 96 28 chr3 2266212 2266608 -225257970 + L1ME4a LINE L1 5629 6051 -70 2925 195 40 15 chr3 2267443 2268124 -225256454 + L1MC2 LINE L1 5636 6333 -11 22 35 0 0 chr3 2268232 2268261 -225256317 + AT_rich Low_complexity Low_complexity 1 29 0 209 194 0 16 chr3 2268352 2268414 -225256164 + CT-rich Low_complexity Low_complexity 2 62 0 267 31 0 0 chr3 2269171 2269203 -225255375 + (GA)n Simple_repeat Simple_repeat 2 33 0 2015 197 15 5 chr3 2269324 2269714 -225254864 - MSTD LTR MaLR 0 396 3 412 222 134 8 chr3 2270823 2271025 -225253553 - MER67D LTR ERV1 0 514 233 2770 176 3 4 chr3 2271027 2271894 -225252684 + L1PB1 LINE L1 4806 5672 -479 734 113 0 0 chr3 2271905 2272020 -225252558 - L1P5 LINE L1 -362 5789 5675 281 98 49 0 chr3 2272025 2272066 -225252512 - L1P5 LINE L1 -425 5726 5684 180 0 0 0 chr3 2272066 2272086 -225252492 + (TA)n Simple_repeat Simple_repeat 1 20 0 2331 123 3 6 chr3 2272086 2272445 -225252133 + L1PB1 LINE L1 5794 6151 0 423 0 0 0 chr3 2272462 2272509 -225252069 + (CA)n Simple_repeat Simple_repeat 2 48 0 963 144 33 93 chr3 2272512 2272727 -225251851 - MER67D LTR ERV1 -312 202 1 21 36 0 0 chr3 2274714 2274742 -225249836 + AT_rich Low_complexity Low_complexity 1 28 0 297 164 0 36 chr3 2275860 2275915 -225248663 + MIR SINE MIR 1 53 -209 996 237 10 5 chr3 2275991 2276198 -225248380 + MER58A DNA MER1_type 17 224 0 238 150 0 0 chr3 2276354 2276394 -225248184 - L1MB7 LINE L1 -13 6171 6132 2045 247 59 22 chr3 2276489 2277214 -225247364 - L1MB7 LINE L1 -195 5989 5239 267 325 67 17 chr3 2277317 2277437 -225247141 + MIR SINE MIR 29 154 -108 1536 201 3 11 chr3 2279963 2280247 -225244331 - AluJo SINE Alu -30 282 1 500 352 109 24 chr3 2280805 2281452 -225243126 + L2 LINE L2 2516 3302 -11 180 225 42 42 chr3 2281844 2281915 -225242663 - L2 LINE L2 -2614 700 630 * 334 313 47 0 chr3 2281905 2282033 -225242545 + MIR3 SINE MIR 70 203 -5 21 0 0 0 chr3 2283049 2283070 -225241508 + AT_rich Low_complexity Low_complexity 1 21 0 1469 149 54 144 chr3 2283164 2283628 -225240950 + LTR49 LTR ERV1 4 425 -170 346 226 11 117 chr3 2283635 2283789 -225240789 + LTR48 LTR ERV1 521 614 -30 324 0 0 0 chr3 2283829 2283865 -225240713 + (CA)n Simple_repeat Simple_repeat 2 37 0 2062 112 0 7 chr3 2284728 2285015 -225239563 + AluSp SINE Alu 29 313 0 225 0 0 0 chr3 2286701 2286726 -225237852 + (TG)n Simple_repeat Simple_repeat 2 26 0 493 275 38 26 chr3 2287512 2287702 -225236876 - MIR3 SINE MIR -54 208 6 21 0 0 0 chr3 2289880 2289901 -225234677 + AT_rich Low_complexity Low_complexity 1 21 0 253 278 0 0 chr3 2292372 2292426 -225232152 - L2 LINE L2 -18 3295 3242 1812 178 30 35 chr3 2292427 2292825 -225231753 + MSTD LTR MaLR 1 396 0 3051 260 42 31 chr3 2292827 2293762 -225230816 + MSTD-int LTR MaLR 2 946 -789 886 242 57 0 chr3 2293764 2293975 -225230603 + MSTD LTR MaLR 163 385 -11 447 233 110 75 chr3 2294061 2294499 -225230079 - L1MC5 LINE L1 -20 7941 7489 529 278 53 74 chr3 2294796 2295080 -225229498 - L2 LINE L2 -111 3202 2925 1673 170 48 0 chr3 2295340 2295507 -225229071 - AluSg SINE Alu -2 308 120 405 39 0 0 chr3 2295507 2295558 -225229020 + (TG)n Simple_repeat Simple_repeat 2 52 0 1673 170 48 0 chr3 2295558 2295684 -225228894 - AluSg SINE Alu -190 120 1 1727 134 17 7 chr3 2295768 2296060 -225228518 - AluY SINE Alu -16 295 1 1280 275 59 45 chr3 2296062 2296574 -225228004 - LTR40a LTR ERVL 0 519 1 235 111 0 0 chr3 2296575 2296611 -225227967 + MER5C DNA MER1_type 289 324 0 1611 143 34 20 chr3 2296897 2297191 -225227387 - L1PA16 LINE L1 -3 6163 5866 393 264 62 92 chr3 2297230 2297525 -225227053 - L1M4c LINE L1 -4423 2140 1704 2245 194 21 8 chr3 2297531 2298010 -225226568 + L1MC3 LINE L1 7300 7784 -1 328 196 36 36 chr3 2298249 2298417 -225226161 + (CACAA)n Simple_repeat Simple_repeat 5 172 0 2157 237 49 35 chr3 2298540 2299442 -225225136 - L1M4c LINE L1 -2481 3901 2988 969 223 32 77 chr3 2299429 2299912 -225224666 - L1M4c LINE L1 -3698 2684 2223 * 21 36 0 0 chr3 2301315 2301343 -225223235 + AT_rich Low_complexity Low_complexity 1 28 0 221 200 10 30 chr3 2301969 2302069 -225222509 + A-rich Low_complexity Low_complexity 3 100 0 5474 36 3 1 chr3 2302267 2302929 -225221649 + L1PA5 LINE L1 5491 6153 -1 251 123 31 15 chr3 2303207 2303272 -225221306 + (TA)n Simple_repeat Simple_repeat 1 66 0 1599 158 14 14 chr3 2303272 2303557 -225221021 - AluJo SINE Alu -27 285 1 2348 44 3 0 chr3 2303641 2303935 -225220643 - AluY SINE Alu -16 295 1 2176 87 17 0 chr3 2304072 2304359 -225220219 - AluSc SINE Alu -15 294 3 21 0 0 0 chr3 2304375 2304396 -225220182 + AT_rich Low_complexity Low_complexity 1 21 0 920 67 0 0 chr3 2304398 2304518 -225220060 + L1PB3 LINE L1 6026 6145 -9 621 214 17 79 chr3 2304518 2304696 -225219882 - L1MA9 LINE L1 -3 6288 6122 318 286 211 6 chr3 2305687 2305848 -225218730 + L2 LINE L2 3096 3289 -24 466 322 44 6 chr3 2307185 2307365 -225217213 - MIR SINE MIR -56 206 20 390 260 188 26 chr3 2308668 2308822 -225215756 + MIR SINE MIR 33 211 -51 23 33 0 0 chr3 2308823 2308853 -225215725 + AT_rich Low_complexity Low_complexity 1 30 0 217 325 74 43 chr3 2310588 2310751 -225213827 + MIR SINE MIR 6 173 -89 316 109 0 0 chr3 2311079 2311125 -225213453 + MADE1 DNA Mariner 1 46 -34 602 331 57 75 chr3 2311375 2312461 -225212117 + L2 LINE L2 2228 3304 -9 693 312 44 30 chr3 2313342 2313640 -225210938 + LTR16A LTR ERVL 70 371 -79 4496 64 33 4 chr3 2314072 2315072 -225209506 + MER11A LTR ERVK 1 1266 0 368 240 39 0 chr3 2316040 2316144 -225208434 - MER105 DNA DNA -55 149 42 39 50 0 0 chr3 2321647 2321707 -225202871 + AT_rich Low_complexity Low_complexity 1 60 0 1857 187 107 3 chr3 2321861 2322252 -225202326 - MSTB1 LTR MaLR 0 432 1 205 333 86 0 chr3 2322403 2322496 -225202082 - MIR3 SINE MIR -31 177 77 1823 154 36 3 chr3 2322687 2322993 -225201585 + MER6A DNA MER2_type 1 316 -289 332 177 32 0 chr3 2322986 2323048 -225201530 - MSTB1 LTR MaLR -368 64 1 * 1764 122 7 0 chr3 2323098 2323377 -225201201 + MER6A DNA MER2_type 325 605 0 197 375 100 17 chr3 2323614 2323734 -225200844 - L2 LINE L2 0 3272 3143 1532 270 57 43 chr3 2323770 2324351 -225200227 - MLT1E LTR MaLR -4 589 1 344 115 0 186 chr3 2324354 2324426 -225200152 + MER5C DNA MER1_type 233 317 -7 1755 171 13 3 chr3 2324426 2324725 -225199853 - AluJb SINE Alu -10 302 1 1209 269 59 45 chr3 2324727 2325239 -225199339 - LTR40a LTR ERVL 0 519 1 344 115 0 186 chr3 2325239 2325276 -225199302 + MER5C DNA MER1_type 318 324 0 512 276 43 19 chr3 2326680 2326890 -225197688 + MER58C DNA MER1_type 1 215 0 781 236 113 5 chr3 2327503 2327595 -225196983 - MER46A DNA MER2_type -2496 235 154 1936 107 95 76 chr3 2327595 2328015 -225196563 + MSTA LTR MaLR 1 428 0 781 236 113 5 chr3 2328015 2328134 -225196444 - MER46A DNA MER2_type -2577 154 1 476 221 32 0 chr3 2328678 2328773 -225195805 - MER5A DNA MER1_type 0 189 92 602 234 22 0 chr3 2328773 2328910 -225195668 + MLT2F LTR ERVL 1 140 -523 501 192 10 29 chr3 2328920 2329024 -225195554 + MLT1E3 LTR MaLR 51 152 -472 3475 204 8 8 chr3 2329042 2329666 -225194912 + MLT1A1-int LTR MaLR 1108 1731 -4 780 193 183 63 chr3 2329670 2329955 -225194623 + MLT1A1 LTR MaLR 1 319 -46 321 181 33 45 chr3 2329967 2330085 -225194493 + MLT1E1 LTR MaLR 149 268 -359 299 154 15 0 chr3 2330087 2330152 -225194426 + GA-rich Low_complexity Low_complexity 1 66 0 190 212 30 0 chr3 2330266 2330299 -225194279 - MER5A DNA MER1_type -154 35 2 244 335 48 48 chr3 2330302 2330469 -225194109 + L3 LINE CR1 1308 1474 -103 289 243 78 39 chr3 2330556 2330674 -225193904 - MIR SINE MIR -90 118 2 22 0 0 0 chr3 2331341 2331363 -225193215 + AT_rich Low_complexity Low_complexity 1 22 0 503 347 73 32 chr3 2331999 2332371 -225192207 - MLT1J2 LTR MaLR -14 436 50 259 347 0 0 chr3 2333073 2333148 -225191430 + L3 LINE CR1 1307 1381 -196 243 338 0 13 chr3 2333234 2333311 -225191267 + MIR SINE MIR 75 150 -112 254 177 131 98 chr3 2333562 2333664 -225190914 - MIR3 SINE MIR -42 166 56 30 0 0 0 chr3 2334124 2334154 -225190424 + AT_rich Low_complexity Low_complexity 1 30 0 1993 99 46 3 chr3 2335776 2336060 -225188518 + AluSx SINE Alu 1 296 -16 25 0 0 0 chr3 2336438 2336463 -225188115 + AT_rich Low_complexity Low_complexity 1 25 0 1576 159 77 69 chr3 2336700 2337077 -225187501 + MLT1B LTR MaLR 11 390 0 2599 109 5 11 chr3 2337768 2338145 -225186433 + THE1C LTR MaLR 1 375 0 264 376 30 15 chr3 2338672 2338805 -225185773 - MIR3 SINE MIR -41 167 33 406 273 11 0 chr3 2338928 2339016 -225185562 - L2 LINE L2 -30 3283 3195 271 322 138 0 chr3 2341820 2341972 -225182606 - MIR SINE MIR -3 259 87 7651 17 1 0 chr3 2342442 2344096 -225180482 + L1PA3 LINE L1 4514 6168 0 202 39 0 0 chr3 2344070 2344152 -225180426 + (TAAA)n Simple_repeat Simple_repeat 3 84 0 285 294 0 24 chr3 2344611 2344737 -225179841 + CT-rich Low_complexity Low_complexity 4 126 0 391 381 11 16 chr3 2345107 2345296 -225179282 + L2 LINE L2 2875 3062 -251 1542 201 189 41 chr3 2345386 2345947 -225178631 + LTR48B LTR ERV1 1 644 0 398 336 17 0 chr3 2345952 2346071 -225178507 + L2 LINE L2 3193 3313 0 36 0 0 0 chr3 2346190 2346226 -225178352 + AT_rich Low_complexity Low_complexity 1 36 0 2821 240 54 40 chr3 2346286 2348047 -225176531 - L1ME1 LINE L1 -5 6161 4377 2067 263 86 18 chr3 2348069 2348370 -225176208 - L1ME1 LINE L1 -2905 3241 2962 1406 187 50 25 chr3 2348370 2348653 -225175925 - AluJo SINE Alu -22 290 1 2067 263 86 18 chr3 2348653 2349292 -225175286 - L1ME1 LINE L1 -3184 2962 2237 765 279 68 19 chr3 2349300 2349565 -225175013 + L1MEc LINE L1 37 314 -6082 2109 293 58 23 chr3 2349609 2350730 -225173848 + L1MEc LINE L1 1164 2323 -4073 471 250 0 0 chr3 2350746 2350833 -225173745 - MER7A DNA MER2_type 0 337 251 1112 214 0 0 chr3 2350833 2351039 -225173539 + MER2 DNA MER2_type 1 206 -139 1408 167 38 38 chr3 2351150 2351413 -225173165 - MER7A DNA MER2_type -85 261 1 380 327 75 39 chr3 2351631 2351885 -225172693 + L2 LINE L2 2812 3074 -198 238 369 92 14 chr3 2351932 2352073 -225172505 - MIR SINE MIR -70 192 41 225 229 72 12 chr3 2353203 2353286 -225171292 + L1MC4 LINE L1 6616 6703 -1339 21 0 0 0 chr3 2353332 2353353 -225171225 + AT_rich Low_complexity Low_complexity 1 21 0 1203 282 104 32 chr3 2354659 2355276 -225169302 - MLT2F LTR ERVL -2 661 1 297 128 0 0 chr3 2355496 2355543 -225169035 + (CA)n Simple_repeat Simple_repeat 2 48 0 442 284 115 6 chr3 2355558 2355741 -225168837 + MIR SINE MIR 2 204 -58 27 49 0 0 chr3 2357697 2357738 -225166840 + AT_rich Low_complexity Low_complexity 1 41 0 23 33 0 0 chr3 2357903 2357933 -225166645 + AT_rich Low_complexity Low_complexity 1 30 0 382 359 12 12 chr3 2358315 2358482 -225166096 - MIR SINE MIR -88 174 8 222 37 0 0 chr3 2359008 2359035 -225165543 + (AATAG)n Simple_repeat Simple_repeat 5 31 0 232 266 76 0 chr3 2359079 2359158 -225165420 + MIR SINE MIR 117 201 -61 379 225 149 64 chr3 2359178 2359402 -225165176 + MLT1H1 LTR MaLR 22 309 -286 1016 234 57 4 chr3 2359554 2359802 -225164776 + L1M4 LINE L1 2 262 -6280 2159 91 0 7 chr3 2359871 2360184 -225164394 + AluSx SINE Alu 1 311 0 818 334 42 42 chr3 2360230 2360781 -225163797 + L1PA6 LINE L1 858 1408 -6166 255 304 49 33 chr3 2360752 2360936 -225163642 + L1PA6 LINE L1 2121 2307 -5267 * 1863 91 0 4 chr3 2361305 2361559 -225163019 + AluY SINE Alu 59 311 0 5455 251 24 21 chr3 2361947 2364279 -225160299 + L1PA6 LINE L1 2231 4524 -3060 837 215 5 46 chr3 2364282 2364501 -225160077 + L1 LINE L1 4589 4798 -1348 6188 83 108 19 chr3 2364501 2365565 -225159013 + MER11A LTR ERVK 1 1266 0 2086 188 68 60 chr3 2365570 2366871 -225157707 + L1PA6 LINE L1 6236 7592 0 4462 239 65 44 chr3 2366903 2368813 -225155765 + L1M4 LINE L1 307 2342 -4302 3371 162 24 7 chr3 2368813 2369405 -225155173 - LTR43 LTR ERV1 0 602 1 4462 239 65 44 chr3 2369405 2370023 -225154555 + L1M4 LINE L1 2342 2946 -3698 2873 227 45 18 chr3 2370010 2370979 -225153599 + L1M4 LINE L1 3250 4245 -2399 * 201 363 70 19 chr3 2371188 2371345 -225153233 - MIR SINE MIR -59 203 39 24 0 0 0 chr3 2371780 2371804 -225152774 + AT_rich Low_complexity Low_complexity 1 24 0 415 252 163 0 chr3 2371928 2372051 -225152527 - L2 LINE L2 0 3313 3171 29 98 0 0 chr3 2372757 2372849 -225151729 + AT_rich Low_complexity Low_complexity 1 92 0 5759 122 2 9 chr3 2374970 2376169 -225148409 - L1PA13 LINE L1 0 6163 4967 4686 181 48 73 chr3 2377660 2378817 -225145761 - MER52A LTR ERV1 0 1755 627 948 258 11 22 chr3 2378983 2379250 -225145328 + L1MCb LINE L1 1 264 -5781 805 243 52 33 chr3 2379254 2379665 -225144913 - L1MCa LINE L1 -1035 5347 4900 * 4354 257 54 17 chr3 2379659 2381278 -225143300 - L1MCa LINE L1 -1885 4497 2819 3903 209 56 15 chr3 2381264 2382307 -225142271 + L1MC3 LINE L1 5161 5400 -746 * 234 195 39 13 chr3 2382314 2382391 -225142187 - L1MCa LINE L1 -4001 2381 2303 337 301 83 74 chr3 2382403 2382699 -225141879 - L1MCa LINE L1 -4230 2333 2032 1662 140 34 17 chr3 2382699 2382992 -225141586 - L1PA16 LINE L1 -3 6163 5866 337 301 83 74 chr3 2382992 2383007 -225141571 - L1MCa LINE L1 -4531 2032 2019 393 293 98 6 chr3 2383151 2383325 -225141253 - L1MCa LINE L1 -4491 1893 1704 2245 194 21 8 chr3 2383331 2383810 -225140768 + L1MC3 LINE L1 7300 7784 -1 1735 290 128 43 chr3 2383851 2384874 -225139704 - L2 LINE L2 -338 2976 1867 482 358 6 6 chr3 2384989 2385168 -225139410 - L2 LINE L2 -1731 1583 1405 587 94 10 0 chr3 2385241 2385337 -225139241 + (TA)n Simple_repeat Simple_repeat 1 97 0 333 0 0 0 chr3 2385336 2385373 -225139205 + (GA)n Simple_repeat Simple_repeat 2 38 0 * 1565 192 4 4 chr3 2385375 2385523 -225139055 - AluSx SINE Alu -36 276 126 279 0 0 0 chr3 2385523 2385554 -225139024 + (TG)n Simple_repeat Simple_repeat 2 32 0 1565 192 4 4 chr3 2385554 2385681 -225138897 - AluSx SINE Alu -185 127 1 198 128 0 0 chr3 2387566 2387605 -225136973 + (TTTG)n Simple_repeat Simple_repeat 2 40 0 231 247 33 73 chr3 2389163 2389313 -225135265 - MIR SINE MIR -2 260 117 28 71 0 0 chr3 2389821 2389877 -225134701 + AT_rich Low_complexity Low_complexity 1 56 0 180 0 0 0 chr3 2389902 2389922 -225134656 + (T)n Simple_repeat Simple_repeat 1 20 0 235 246 66 0 chr3 2390759 2390820 -225133758 + MIR SINE MIR 49 113 -149 326 311 57 31 chr3 2391281 2391474 -225133104 - L3 LINE CR1 -166 1411 1214 289 286 162 0 chr3 2393374 2393479 -225131099 + MIR3 SINE MIR 85 206 -2 1097 294 88 44 chr3 2394662 2395288 -225129290 - L2 LINE L2 -271 3042 2369 237 392 64 8 chr3 2395312 2395437 -225129141 + L2 LINE L2 2817 2948 -366 * 435 299 8 0 chr3 2395434 2395561 -225129017 - L2 LINE L2 -956 2358 2231 338 261 112 25 chr3 2395576 2395737 -225128841 - L2 LINE L2 -1231 2083 1909 25 31 0 0 chr3 2395954 2395986 -225128592 + AT_rich Low_complexity Low_complexity 1 32 0 806 71 8 0 chr3 2396016 2396143 -225128435 + (GGAA)n Simple_repeat Simple_repeat 1 128 0 263 28 28 0 chr3 2396363 2396399 -225128179 + (TTTA)n Simple_repeat Simple_repeat 1 37 0 727 179 0 0 chr3 2396404 2396521 -225128057 - FLAM_C SINE Alu -16 117 1 235 280 85 17 chr3 2397465 2397583 -225126995 + MER117 DNA MER1_type 7 132 -65 21 36 0 0 chr3 2397831 2397859 -225126719 + AT_rich Low_complexity Low_complexity 1 28 0 22 0 0 0 chr3 2399339 2399361 -225125217 + AT_rich Low_complexity Low_complexity 1 22 0 202 93 23 23 chr3 2399554 2399597 -225124981 + (TA)n Simple_repeat Simple_repeat 1 43 0 396 0 0 0 chr3 2400898 2400942 -225123636 + (TG)n Simple_repeat Simple_repeat 2 45 0 342 0 0 0 chr3 2400941 2400979 -225123599 + (TA)n Simple_repeat Simple_repeat 1 38 0 * 348 165 0 28 chr3 2401241 2401350 -225123228 + (TTA)n Simple_repeat Simple_repeat 1 106 0 187 349 0 24 chr3 2401412 2401495 -225123083 - L2 LINE L2 -2421 893 813 2308 58 0 3 chr3 2402060 2402368 -225122210 + AluY SINE Alu 1 307 -4 280 98 49 0 chr3 2402719 2402780 -225121798 + CT-rich Low_complexity Low_complexity 1 64 0 241 382 38 0 chr3 2403217 2403348 -225121230 + L3b LINE CR1 1327 1462 -121 353 243 99 40 chr3 2404854 2405006 -225119572 + LTR37B LTR ERV1 236 396 -72 1715 179 122 24 chr3 2406989 2407414 -225117164 + MLT1C LTR MaLR 1 467 0 210 280 194 32 chr3 2407613 2407706 -225116872 - L2 LINE L2 -24 3248 3141 918 277 93 34 chr3 2407794 2408115 -225116463 + LTR16C LTR ERVL 149 488 -3 395 333 62 25 chr3 2408173 2408416 -225116162 - L2 LINE L2 -174 3139 2888 272 403 93 5 chr3 2408463 2408679 -225115899 - L2 LINE L2 -529 2785 2551 26 0 0 0 chr3 2409113 2409139 -225115439 + AT_rich Low_complexity Low_complexity 1 26 0 287 265 24 0 chr3 2409734 2409817 -225114761 + (TGAA)n Simple_repeat Simple_repeat 1 85 0 231 320 29 10 chr3 2409874 2409977 -225114601 + MIR SINE MIR 3 107 -155 2943 160 29 60 chr3 2410023 2410655 -225113923 + LTR9 LTR ERV1 1 612 0 204 273 131 10 chr3 2410659 2410758 -225113820 + MIR SINE MIR 147 257 -5 463 237 23 45 chr3 2411644 2411821 -225112757 - Charlie7 DNA MER1_type 0 2612 2440 265 321 161 12 chr3 2411871 2412033 -225112545 + L2 LINE L2 2892 3077 -195 535 314 110 4 chr3 2412464 2412700 -225111878 + MIR SINE MIR 2 262 0 363 274 212 0 chr3 2413600 2413746 -225110832 - MER5B DNA MER1_type 0 178 2 1272 132 5 0 chr3 2414327 2414517 -225110061 + MER41B LTR ERV1 1 191 -444 1380 127 9 27 chr3 2414517 2414648 -225109930 + AluSq SINE Alu 1 128 -185 189 0 0 0 chr3 2414648 2414669 -225109909 + (TA)n Simple_repeat Simple_repeat 2 22 0 1380 127 9 27 chr3 2414669 2414758 -225109820 + AluSq SINE Alu 128 217 -96 2740 156 2 26 chr3 2414793 2415261 -225109317 + MER41B LTR ERV1 179 635 0 2413 118 22 3 chr3 2416768 2417125 -225107453 + THE1B LTR MaLR 1 364 0 312 316 22 7 chr3 2417821 2417960 -225106618 + L1M4 LINE L1 3168 3308 -2838 675 296 121 44 chr3 2418321 2419616 -225104962 + L1M4 LINE L1 3662 5055 -1091 280 313 12 18 chr3 2419815 2419981 -225104597 + (TATATG)n Simple_repeat Simple_repeat 3 167 0 2166 100 7 0 chr3 2420080 2420380 -225104198 + AluY SINE Alu 1 302 -9 198 310 127 35 chr3 2420637 2420779 -225103799 + L2 LINE L2 3150 3304 -9 761 253 42 28 chr3 2420824 2421113 -225103465 - L1M4 LINE L1 -985 5161 4869 1215 194 3 54 chr3 2421223 2421538 -225103040 - AluY SINE Alu 0 311 13 4792 161 17 25 chr3 2421942 2422904 -225101674 + L1P3 LINE L1 10 1069 -5392 6097 94 6 0 chr3 2422904 2423762 -225100816 + L1PA7 LINE L1 5277 6139 -15 419 92 92 6 chr3 2423764 2423927 -225100651 + (TA)n Simple_repeat Simple_repeat 2 178 0 25 31 0 0 chr3 2423927 2423959 -225100619 + AT_rich Low_complexity Low_complexity 1 32 0 455 44 117 0 chr3 2423959 2424096 -225100482 + (TA)n Simple_repeat Simple_repeat 1 153 0 300 228 0 109 chr3 2424097 2424198 -225100380 - L1MC4 LINE L1 -1339 6703 6614 613 130 5 38 chr3 2424212 2424397 -225100181 + (TA)n Simple_repeat Simple_repeat 2 180 0 318 336 0 25 chr3 2424411 2424530 -225100048 - L1MC4 LINE L1 -1339 6703 6588 438 130 28 0 chr3 2424530 2424638 -225099940 + (TA)n Simple_repeat Simple_repeat 1 111 0 10574 128 12 2 chr3 2424738 2426420 -225098158 + L1P3 LINE L1 1269 2968 -3178 7472 86 11 1 chr3 2426398 2427866 -225096712 + L1P3 LINE L1 4287 5764 -390 * 22 0 0 30 chr3 2428149 2428165 -225096413 + AT_rich Low_complexity Low_complexity 1 16 -16 2232 58 3 48 chr3 2428165 2428478 -225096100 - AluY SINE Alu 0 311 13 22 0 0 30 chr3 2428478 2428494 -225096084 + AT_rich Low_complexity Low_complexity 16 32 0 411 269 90 19 chr3 2428597 2428753 -225095825 + MIR SINE MIR 20 186 -76 26 0 0 0 chr3 2429956 2429982 -225094596 + AT_rich Low_complexity Low_complexity 1 26 0 312 172 0 16 chr3 2429989 2430053 -225094525 - L1MD2 LINE L1 -22 6337 6275 4977 212 44 20 chr3 2430061 2431541 -225093037 + L1MB7 LINE L1 3946 5450 -724 2855 203 50 14 chr3 2431545 2432072 -225092506 + L1MB7 LINE L1 5488 6045 -139 183 42 0 0 chr3 2432072 2432096 -225092482 + (TTTTG)n Simple_repeat Simple_repeat 3 26 0 2855 203 50 14 chr3 2432096 2432234 -225092344 + L1MB7 LINE L1 6045 6177 -7 23 54 0 0 chr3 2432534 2432571 -225092007 + AT_rich Low_complexity Low_complexity 1 37 0 2041 149 0 0 chr3 2432711 2433013 -225091565 + AluSq SINE Alu 1 302 -11 23111 32 7 0 chr3 2435096 2438307 -225086271 - L1P1 LINE L1 -383 5772 2544 3886 245 51 58 chr3 2438604 2440167 -225084411 - L1ME1 LINE L1 -246 5920 4390 1219 186 113 15 chr3 2440167 2440464 -225084114 + AluJb SINE Alu 1 312 0 3886 245 51 58 chr3 2440464 2441192 -225083386 - L1ME1 LINE L1 -1776 4390 3658 180 0 0 0 chr3 2441498 2441518 -225083060 + (CA)n Simple_repeat Simple_repeat 2 21 0 539 151 41 41 chr3 2443255 2443401 -225081177 + Charlie5 DNA MER1_type 2417 2562 -50 1107 30 0 0 chr3 2443452 2443586 -225080992 - L1PA4 LINE L1 -4 6151 6018 22 56 0 0 chr3 2443652 2443688 -225080890 + AT_rich Low_complexity Low_complexity 1 36 0 1503 176 36 39 chr3 2443837 2444144 -225080434 + AluJo SINE Alu 7 312 0 1970 154 81 8 chr3 2444712 2445081 -225079497 - MSTD LTR MaLR 0 396 1 42247 53 4 1 chr3 2445505 2451622 -225072956 + L1PA4 LINE L1 19 6155 0 1605 118 4 4 chr3 2452089 2452326 -225072252 - L1PA15 LINE L1 -3 6162 5926 1685 137 5 2 chr3 2452376 2452643 -225071935 - L1PA15 LINE L1 -237 5929 5654 216 326 119 26 chr3 2452651 2452844 -225071734 + MIR SINE MIR 52 262 0 577 321 33 23 chr3 2454006 2454399 -225070179 + L1MCc LINE L1 1140 1536 -4887 247 286 71 11 chr3 2454392 2454675 -225069903 + L1M4 LINE L1 3106 3405 -2741 * 8568 208 28 19 chr3 2454683 2456759 -225067819 - L1 LINE L1 -1763 5085 2987 4212 120 5 13 chr3 2456759 2457376 -225067202 + LTR9 LTR ERV1 1 612 0 8568 208 28 19 chr3 2457376 2457394 -225067184 - L1 LINE L1 -3861 2987 2971 579 217 1 35 chr3 2457518 2457745 -225066833 - L1 LINE L1 -3896 2952 2735 2487 269 61 71 chr3 2457745 2458829 -225065749 + L1M4 LINE L1 3535 4596 -1550 1233 175 55 7 chr3 2458829 2459138 -225065440 - MER33 DNA MER1_type 0 324 1 2487 269 61 71 chr3 2459138 2459785 -225064793 + L1M4 LINE L1 4596 5248 -898 824 199 70 25 chr3 2459805 2460006 -225064572 - LTR50 LTR ERVL -585 210 1 299 189 0 0 chr3 2460010 2460063 -225064515 + HsTC2 DNA Tc2 1841 1893 -5 1700 174 0 0 chr3 2461675 2461976 -225062602 - AluJb SINE Alu 0 301 1 26 30 0 0 chr3 2462131 2462164 -225062414 + AT_rich Low_complexity Low_complexity 1 33 0 562 302 62 18 chr3 2462442 2462783 -225061795 + HAL1 LINE L1 663 1018 -1489 4077 210 76 49 chr3 2463214 2464974 -225059604 + MER52A LTR ERV1 1 1743 -12 24 53 0 0 chr3 2466214 2466252 -225058326 + AT_rich Low_complexity Low_complexity 1 38 0 316 286 133 41 chr3 2466277 2466378 -225058200 - MIR SINE MIR -15 247 157 1550 222 25 73 chr3 2466378 2466909 -225057669 - MLT1D LTR MaLR 0 505 1 316 286 133 41 chr3 2466909 2467003 -225057575 - MIR SINE MIR -105 157 34 389 307 67 11 chr3 2467494 2467673 -225056905 + MIR SINE MIR 63 251 -11 1721 136 0 0 chr3 2468427 2468670 -225055908 - AluSq SINE Alu -16 297 55 470 181 0 43 chr3 2468790 2468978 -225055600 + (TA)n Simple_repeat Simple_repeat 1 180 0 974 225 36 0 chr3 2469130 2469352 -225055226 - LTR49 LTR ERV1 0 595 366 1211 145 86 23 chr3 2469369 2469590 -225054988 - AluJo SINE Alu -14 298 64 1171 141 20 0 chr3 2469590 2469789 -225054789 - LTR29 LTR ERV1 -230 392 190 396 108 95 14 chr3 2469794 2469868 -225054710 - LTR29 LTR ERV1 -392 230 151 366 271 9 0 chr3 2469884 2469991 -225054587 - MER34 LTR ERV1 -434 108 1 259 310 0 109 chr3 2470291 2470465 -225054113 + MIR SINE MIR 37 191 -71 1478 290 92 56 chr3 2470929 2471913 -225052665 - LTR28 LTR ERV1 0 1020 1 2446 65 3 7 chr3 2471963 2472272 -225052306 + AluY SINE Alu 1 308 -3 23 33 0 0 chr3 2472412 2472442 -225052136 + AT_rich Low_complexity Low_complexity 1 30 0 3491 130 14 40 chr3 2472481 2473106 -225051472 + MER4B LTR ERV1 2 610 0 1994 134 0 26 chr3 2473202 2473508 -225051070 - AluSq SINE Alu -15 298 1 275 59 0 0 chr3 2474229 2474263 -225050315 - MER21B LTR ERV1 -158 705 672 604 216 35 0 chr3 2474297 2474413 -225050165 - MER101B LTR ERV1 -450 120 1 386 234 79 106 chr3 2474479 2474782 -225049796 + L1ME4a LINE L1 5764 6058 -63 2150 106 3 3 chr3 2474854 2475138 -225049440 + AluSq SINE Alu 3 286 -27 1405 188 65 53 chr3 2475368 2475695 -225048883 - MER21B LTR ERV1 -1 862 529 2520 205 43 76 chr3 2475695 2475721 -225048857 + MER72 LTR ERV1 1 26 -696 2531 59 0 3 chr3 2475721 2476026 -225048552 + AluY SINE Alu 1 304 -7 2520 205 43 76 chr3 2476026 2476746 -225047832 + MER72 LTR ERV1 26 722 0 1405 188 65 53 chr3 2476746 2476774 -225047804 - MER21B LTR ERV1 -334 529 503 1137 163 0 100 chr3 2476782 2477033 -225047545 - MER21B LTR ERV1 -637 226 1 23 54 0 0 chr3 2477438 2477475 -225047103 + AT_rich Low_complexity Low_complexity 1 37 0 387 60 0 0 chr3 2478307 2478357 -225046221 + (GGGAA)n Simple_repeat Simple_repeat 1 50 0 332 349 48 26 chr3 2478781 2479010 -225045568 + L2 LINE L2 3077 3310 -3 562 286 65 35 chr3 2480390 2480589 -225043989 - MIR SINE MIR 0 262 58 220 304 0 18 chr3 2481033 2481089 -225043489 - L2 LINE L2 -97 3175 3121 207 0 0 0 chr3 2481134 2481157 -225043421 + (TG)n Simple_repeat Simple_repeat 1 23 0 515 344 29 16 chr3 2482178 2482422 -225042156 - MIR SINE MIR -10 252 6 1271 165 36 14 chr3 2482520 2482853 -225041725 - MER88 LTR ERVL 0 464 43 881 228 0 0 chr3 2482868 2483026 -225041552 - AluJb SINE Alu -18 294 137 276 204 41 10 chr3 2483061 2483159 -225041419 + (TA)n Simple_repeat Simple_repeat 1 101 0 947 286 34 67 chr3 2483536 2483907 -225040671 - HAL1b LINE L1 -450 898 549 1928 128 6 39 chr3 2483907 2484219 -225040359 - AluSx SINE Alu -10 302 1 947 286 34 67 chr3 2484219 2484400 -225040178 - HAL1b LINE L1 -799 549 364 27 0 0 0 chr3 2484414 2484441 -225040137 + AT_rich Low_complexity Low_complexity 1 27 0 1901 181 52 11 chr3 2484563 2485027 -225039551 + L1P LINE L1 1246 1728 -4418 887 83 0 8 chr3 2485009 2485142 -225039436 + L1P LINE L1 2380 2511 -3635 * 16457 37 1 1 chr3 2485136 2487172 -225037406 - L1PA2 LINE L1 -2134 4012 1978 11554 29 0 1 chr3 2487172 2489348 -225035230 + L1PA2 LINE L1 4001 6155 0 14901 99 14 6 chr3 2489350 2491544 -225033034 + L1P LINE L1 2500 4709 -1437 528 304 94 24 chr3 2491629 2492010 -225032568 - L1MC/D LINE L1 -2084 5724 5317 366 297 82 15 chr3 2492092 2492287 -225032291 - L1MC/D LINE L1 -917 5229 5022 369 268 41 24 chr3 2492287 2492410 -225032168 + MIR SINE MIR 82 206 -56 915 194 23 23 chr3 2492423 2492598 -225031980 + AluJo SINE Alu 1 175 -137 2201 74 0 0 chr3 2494123 2494440 -225030138 - AluY SINE Alu 0 317 1 2272 83 27 10 chr3 2494535 2494835 -225029743 + AluSx SINE Alu 1 305 -7 3894 150 21 3 chr3 2495293 2495966 -225028612 + MER6 DNA MER2_type 181 865 0 908 208 69 12 chr3 2495971 2496097 -225028481 - L1ME LINE L1 -349 5817 5700 2131 128 0 0 chr3 2496097 2496395 -225028183 - AluSq SINE Alu -15 298 1 908 208 69 12 chr3 2496395 2496513 -225028065 - L1ME LINE L1 -466 5700 5559 * 1948 147 0 3 chr3 2496497 2496811 -225027767 + L1P LINE L1 5 317 -5829 608 241 6 6 chr3 2498248 2498414 -225026164 - L1 LINE L1 -1222 4924 4759 1356 130 43 9 chr3 2498416 2498646 -225025932 - MSTA LTR MaLR 0 428 191 1994 121 7 7 chr3 2498646 2498944 -225025634 - AluSq SINE Alu -15 298 1 2390 118 25 3 chr3 2500923 2501279 -225023299 + THE1B LTR MaLR 1 364 0 264 322 138 0 chr3 2501812 2501964 -225022614 - MIR SINE MIR -3 259 87 3243 69 0 4 chr3 2502415 2502867 -225021711 + L1P LINE L1 4497 4946 -1200 503 152 11 22 chr3 2502969 2503061 -225021517 - MER77 LTR ERV1 -148 457 367 405 0 0 0 chr3 2503093 2503138 -225021440 + (TG)n Simple_repeat Simple_repeat 2 46 0 398 154 154 0 chr3 2503149 2503259 -225021319 - L1MC4a LINE L1 -1382 6426 6300 421 226 168 13 chr3 2503344 2503499 -225021079 - L1MC3 LINE L1 -1521 6264 6086 1908 145 16 3 chr3 2503500 2503804 -225020774 + AluJb SINE Alu 1 308 -4 338 206 0 0 chr3 2503807 2503875 -225020703 + L1MC4 LINE L1 6636 6703 -1339 577 225 85 84 chr3 2504058 2504449 -225020129 - MSTB2 LTR MaLR -13 444 1 220 336 82 55 chr3 2504462 2504572 -225020006 - MIR3 SINE MIR -93 115 3 6776 67 8 5 chr3 2504725 2506388 -225018190 - L1PA7 LINE L1 -16 6138 4475 211 197 45 0 chr3 2511709 2511775 -225012803 + (CCAA)n Simple_repeat Simple_repeat 2 70 0 25 0 0 0 chr3 2512284 2512309 -225012269 + AT_rich Low_complexity Low_complexity 1 25 0 22 0 0 0 chr3 2516844 2516866 -225007712 + AT_rich Low_complexity Low_complexity 1 22 0 192 111 0 0 chr3 2516945 2516981 -225007597 + (TG)n Simple_repeat Simple_repeat 2 37 0 26 0 0 0 chr3 2517070 2517096 -225007482 + AT_rich Low_complexity Low_complexity 1 26 0 716 81 52 17 chr3 2517148 2517320 -225007258 + (CAAA)n Simple_repeat Simple_repeat 2 179 0 216 0 0 0 chr3 2517738 2517762 -225006816 + (T)n Simple_repeat Simple_repeat 1 24 0 183 42 0 0 chr3 2518398 2518422 -225006156 + (TTTTC)n Simple_repeat Simple_repeat 1 24 0 4456 143 191 16 chr3 2523393 2524273 -225000305 + L1PBa LINE L1 772 1862 -5001 2363 90 0 3 chr3 2524273 2524573 -225000005 + AluY SINE Alu 1 299 -12 4456 143 191 16 chr3 2524573 2524730 -224999848 + L1PBa LINE L1 1862 1990 -4873 246 192 0 0 chr3 2526737 2526789 -224997789 + A-rich Low_complexity Low_complexity 1 52 0 23 0 0 0 chr3 2526933 2526956 -224997622 + AT_rich Low_complexity Low_complexity 1 23 0 22 0 0 0 chr3 2528516 2528538 -224996040 + AT_rich Low_complexity Low_complexity 1 22 0 322 297 0 0 chr3 2532718 2532809 -224991769 + L1MC4 LINE L1 6613 6703 -1339 198 0 0 0 chr3 2532862 2532884 -224991694 + (TA)n Simple_repeat Simple_repeat 2 23 0 811 84 0 19 chr3 2634256 2634363 -224890215 + FLAM_A SINE Alu 22 126 -16 3298 117 10 2 chr3 2634408 2634906 -224889672 + L1PB3 LINE L1 5650 6151 -3 212 342 13 0 chr3 2635245 2635324 -224889254 + MIR SINE MIR 70 149 -59 1894 128 16 26 chr3 2636145 2636451 -224888127 + AluSx SINE Alu 1 303 -9 533 218 247 6 chr3 2636451 2636621 -224887957 + MIR SINE MIR 51 261 -1 352 278 32 24 chr3 2637076 2637202 -224887376 + MIR SINE MIR 20 146 -116 279 284 0 0 chr3 2639014 2639088 -224885490 + G-rich Low_complexity Low_complexity 1 74 0 3359 134 107 6 chr3 2640567 2641201 -224883377 + Tigger1 DNA MER2_type 63 760 -1658 * 7667 128 30 8 chr3 2641192 2642504 -224882074 + Tigger1 DNA MER2_type 1079 2418 0 2365 123 5 32 chr3 2642833 2643207 -224881371 + THE1B LTR MaLR 1 364 0 1742 190 7 3 chr3 2646718 2647013 -224877565 - AluSx SINE Alu -16 296 1 28 0 0 0 chr3 2647061 2647089 -224877489 + AT_rich Low_complexity Low_complexity 1 28 0 372 363 57 6 chr3 2647197 2647354 -224877224 + MIR3 SINE MIR 20 184 -24 2162 112 3 0 chr3 2647542 2647837 -224876741 - AluSp SINE Alu -17 296 1 276 87 0 43 chr3 2648449 2648495 -224876083 - L2 LINE L2 -75 3238 3195 520 281 67 12 chr3 2649207 2649371 -224875207 + MER5B DNA MER1_type 6 178 0 2093 121 0 0 chr3 2649785 2650090 -224874488 - AluSx SINE Alu 0 305 1 2220 112 0 13 chr3 2651091 2651394 -224873184 + AluSx SINE Alu 1 299 -13 2180 187 74 71 chr3 2652182 2652777 -224871801 - L1MC3 LINE L1 0 7785 7189 291 262 24 12 chr3 2652778 2652862 -224871716 - MLT1F1 LTR MaLR -443 124 40 298 163 0 0 chr3 2652866 2652915 -224871663 - L1MC3 LINE L1 -692 7093 7045 315 365 0 0 chr3 2652915 2653030 -224871548 + MIR3 SINE MIR 71 185 -23 2289 112 0 0 chr3 2653186 2653489 -224871089 + AluSx SINE Alu 1 303 -9 23 0 0 0 chr3 2653517 2653540 -224871038 + AT_rich Low_complexity Low_complexity 1 23 0 1002 146 189 5 chr3 2653703 2653888 -224870690 + MER20 DNA MER1_type 1 219 0 203 79 26 0 chr3 2654731 2654769 -224869809 + (CAAAA)n Simple_repeat Simple_repeat 2 40 0 376 303 141 15 chr3 2655787 2655985 -224868593 + MIR SINE MIR 40 262 0 186 293 35 0 chr3 2656692 2656750 -224867828 - MIR3 SINE MIR -37 171 112 222 338 13 0 chr3 2657479 2657556 -224867022 + MIR SINE MIR 68 145 -63 232 222 123 0 chr3 2658457 2658538 -224866040 - MIR3 SINE MIR -16 192 102 202 296 14 28 chr3 2658727 2658798 -224865780 - MIR SINE MIR -119 89 20 285 217 0 17 chr3 2659423 2659483 -224865095 + MER91 DNA MER1_type 2 60 -80 1881 72 103 4 chr3 2659837 2660099 -224864479 - AluSc SINE Alu -17 292 5 212 315 23 62 chr3 2660170 2660299 -224864279 + MIR SINE MIR 2 133 -75 22 0 0 0 chr3 2660334 2660356 -224864222 + AT_rich Low_complexity Low_complexity 1 22 0 2542 53 0 22 chr3 2660747 2661065 -224863513 - AluY SINE Alu 0 311 1 314 245 96 11 chr3 2661347 2661441 -224863137 - MER69A DNA AcHobo 0 177 76 1798 191 68 28 chr3 2661441 2661642 -224862936 + L1MD2 LINE L1 5944 6135 -224 2268 107 3 0 chr3 2661642 2661952 -224862626 + AluSx SINE Alu 1 311 -1 1798 191 68 28 chr3 2661952 2662149 -224862429 + L1MD2 LINE L1 6135 6358 -1 248 307 44 18 chr3 2662154 2662268 -224862310 - MER69A DNA AcHobo -60 117 1 253 348 38 52 chr3 2663093 2663303 -224861275 + L2 LINE L2 2564 2770 -544 545 268 87 70 chr3 2663495 2663794 -224860784 + MER5C DNA MER1_type 21 324 0 530 241 195 0 chr3 2664070 2664244 -224860334 + MIR SINE MIR 49 256 -6 3547 152 48 2 chr3 2664299 2664905 -224859673 - L1MB3 LINE L1 0 6183 5550 2130 116 3 16 chr3 2664906 2665216 -224859362 - AluSx SINE Alu -3 309 4 236 250 62 38 chr3 2666010 2666090 -224858488 + MIR SINE MIR 46 127 -81 2308 97 0 3 chr3 2666194 2666504 -224858074 + AluY SINE Alu 1 309 -2 206 310 113 0 chr3 2666639 2666710 -224857868 - MIR SINE MIR -155 107 29 760 222 102 9 chr3 2667059 2667275 -224857303 - MIR SINE MIR -13 249 14 981 195 20 20 chr3 2667715 2667915 -224856663 + MER20 DNA MER1_type 1 200 -19 210 333 0 43 chr3 2667974 2668043 -224856535 + L3 LINE CR1 1508 1573 -4 2003 140 10 0 chr3 2668618 2668911 -224855667 - AluSx SINE Alu -16 296 1 339 314 58 19 chr3 2669107 2669263 -224855315 + MIR3 SINE MIR 39 200 -8 939 117 7 15 chr3 2669421 2669558 -224855020 + AluJb SINE Alu 1 136 -176 1900 167 0 0 chr3 2669558 2669846 -224854732 + AluJb SINE Alu 6 293 -19 261 0 0 0 chr3 2669865 2669894 -224854684 + (TTA)n Simple_repeat Simple_repeat 2 30 0 2169 100 7 0 chr3 2669896 2670176 -224854402 - AluSx SINE Alu -30 282 1 257 109 455 0 chr3 2670627 2670682 -224853896 - MADE1 DNA Mariner 0 80 1 1856 145 35 0 chr3 2671071 2671187 -224853391 + AluSx SINE Alu 1 112 -200 387 0 0 0 chr3 2671187 2671230 -224853348 + (TAA)n Simple_repeat Simple_repeat 2 44 0 1856 145 35 0 chr3 2671230 2671402 -224853176 + AluSx SINE Alu 112 299 -13 424 246 53 18 chr3 2672426 2672540 -224852038 - MIR3 SINE MIR -77 131 14 1263 124 0 43 chr3 2673203 2673389 -224851189 - AluSx SINE Alu -134 178 1 685 224 39 86 chr3 2673520 2673775 -224850803 - MER112 DNA MER1_type -12 248 6 299 269 86 30 chr3 2673862 2674096 -224850482 - L1ME4a LINE L1 -2 6119 5873 1029 186 9 24 chr3 2674190 2674258 -224850320 - MER3 DNA MER1_type -1 208 141 1936 143 7 7 chr3 2674258 2674545 -224850033 - AluSx SINE Alu -25 287 1 1029 186 9 24 chr3 2674545 2674686 -224849892 - MER3 DNA MER1_type -68 141 2 248 385 57 0 chr3 2676270 2676392 -224848186 - MIR SINE MIR -113 149 21 213 39 0 0 chr3 2677588 2677614 -224846964 + (CAA)n Simple_repeat Simple_repeat 2 27 0 276 284 0 68 chr3 2678800 2678888 -224845690 + L2 LINE L2 3168 3249 -23 2240 100 0 3 chr3 2681684 2681973 -224842605 - AluSx SINE Alu -24 288 1 209 173 154 19 chr3 2681993 2682045 -224842533 - L2 LINE L2 -3 3310 3252 185 0 0 39 chr3 2682132 2682158 -224842420 + (CAAA)n Simple_repeat Simple_repeat 2 26 0 2097 109 10 7 chr3 2682263 2682557 -224842021 - AluSq SINE Alu -18 295 1 376 249 115 91 chr3 2682804 2682998 -224841580 + L1ME4a LINE L1 5631 5834 -287 1887 135 7 0 chr3 2682998 2683279 -224841299 - AluSg SINE Alu -15 295 13 376 249 115 91 chr3 2683279 2683337 -224841241 + L1ME4a LINE L1 5834 5889 -232 277 180 16 141 chr3 2683425 2683553 -224841025 - MLT1H LTR MaLR 0 549 438 1148 198 105 0 chr3 2683974 2684232 -224840346 + L1MB8 LINE L1 4789 5073 -1073 1675 112 0 16 chr3 2684240 2684482 -224840096 - AluSg/x SINE Alu -2 308 71 611 264 7 14 chr3 2684666 2684835 -224839743 + AluY SINE Alu 134 301 0 641 133 23 8 chr3 2684835 2684963 -224839615 + L1MB8 LINE L1 5187 5316 -830 833 199 6 0 chr3 2684965 2685121 -224839457 + FRAM SINE Alu 1 40 0 4457 183 19 25 chr3 2685124 2686004 -224838574 + L1MB8 LINE L1 5304 6178 0 2004 114 0 24 chr3 2686291 2686600 -224837978 - AluSx SINE Alu 0 304 3 216 144 22 0 chr3 2686715 2686761 -224837817 - MIR SINE MIR -62 146 99 480 62 37 0 chr3 2687033 2687114 -224837464 + (TA)n Simple_repeat Simple_repeat 1 84 0 1835 158 18 0 chr3 2687124 2687408 -224837170 - AluJo SINE Alu -23 289 1 858 168 0 0 chr3 2688269 2688394 -224836184 - AluJb SINE Alu -187 125 1 1501 195 3 36 chr3 2688438 2688746 -224835832 - AluJo SINE Alu -14 298 1 2266 104 0 0 chr3 2688969 2689267 -224835311 + AluSx SINE Alu 12 309 -3 670 178 8 0 chr3 2689476 2689594 -224834984 + MLT1D LTR MaLR 387 505 0 546 278 131 0 chr3 2689934 2690110 -224834468 + MIR SINE MIR 32 230 -32 180 77 0 0 chr3 2690185 2690211 -224834367 + (TGAA)n Simple_repeat Simple_repeat 1 26 0 1738 139 58 41 chr3 2690550 2690845 -224833733 - AluSx SINE Alu -12 300 1 2812 231 45 80 chr3 2691311 2691360 -224833218 - L1ME1 LINE L1 -6 6160 6111 1953 143 153 42 chr3 2691360 2691671 -224832907 + MSTA LTR MaLR 1 365 -63 2437 52 0 29 chr3 2691671 2691977 -224832601 - AluY SINE Alu -14 297 1 1953 143 153 42 chr3 2691977 2692050 -224832528 + MSTA LTR MaLR 365 428 0 2812 231 45 80 chr3 2692050 2692233 -224832345 - L1ME1 LINE L1 -55 6111 5923 2187 113 0 0 chr3 2692233 2692526 -224832052 - AluSg SINE Alu -17 293 1 2812 231 45 80 chr3 2692526 2693029 -224831549 - L1ME1 LINE L1 -243 5923 5404 2046 131 7 0 chr3 2693029 2693320 -224831258 + AluSg SINE Alu 1 293 -17 2812 231 45 80 chr3 2693320 2693382 -224831196 - L1ME1 LINE L1 -762 5404 5411 1522 193 14 14 chr3 2693382 2693667 -224830911 - AluJb SINE Alu -27 285 1 2812 231 45 80 chr3 2693667 2693725 -224830853 - L1ME1 LINE L1 -754 5412 5353 3029 249 57 23 chr3 2693769 2694799 -224829779 - L1ME1 LINE L1 -1790 4356 3292 308 64 21 0 chr3 2694827 2694874 -224829704 + (TC)n Simple_repeat Simple_repeat 1 48 0 1022 210 189 7 chr3 2694874 2694950 -224829628 - MER2 DNA MER2_type 0 344 283 2314 92 0 0 chr3 2694950 2695245 -224829333 + AluSx SINE Alu 5 299 -13 1022 210 189 7 chr3 2695245 2695459 -224829119 - MER2 DNA MER2_type -61 283 1 1761 97 45 0 chr3 2696047 2696315 -224828263 + AluSq SINE Alu 25 304 -9 4246 91 21 21 chr3 2697923 2698382 -224826196 - PABL_A LTR ERV1 -9 651 190 2343 93 0 7 chr3 2698382 2698692 -224825886 + AluSx SINE Alu 1 308 -4 4246 91 21 21 chr3 2698692 2698883 -224825695 - PABL_A LTR ERV1 -469 191 1 23 0 0 0 chr3 2699354 2699377 -224825201 + AT_rich Low_complexity Low_complexity 1 23 0 583 99 148 10 chr3 2699382 2699483 -224825095 - FLAM_C SINE Alu -24 119 5 860 131 77 0 chr3 2699532 2699662 -224824916 + FRAM SINE Alu 20 159 -17 293 367 17 0 chr3 2699851 2699971 -224824607 - MIR SINE MIR -133 129 8 534 236 48 36 chr3 2700259 2700424 -224824154 + MER5B DNA MER1_type 11 177 -1 688 129 103 189 chr3 2700651 2700866 -224823712 - MER33 DNA MER1_type -2265 320 145 1752 171 20 3 chr3 2700866 2701159 -224823419 + AluJb SINE Alu 1 298 -14 688 129 103 189 chr3 2701159 2701293 -224823285 - MER33 DNA MER1_type -2440 145 1 7603 15 0 0 chr3 2701529 2702762 -224821816 + L1HS LINE L1 4923 6155 0 1683 161 17 30 chr3 2703334 2703633 -224820945 + AluJb SINE Alu 1 295 -17 474 204 160 18 chr3 2705018 2705243 -224819335 - MER112 DNA MER1_type 0 260 4 1474 206 109 43 chr3 2705850 2706356 -224818222 - MER90 LTR ERV1 -6 608 70 2125 141 13 0 chr3 2706709 2707015 -224817563 - AluJo SINE Alu -2 310 1 212 292 79 22 chr3 2707146 2707235 -224817343 + MIR3 SINE MIR 90 183 -25 1643 249 190 30 chr3 2707755 2708582 -224815996 - HAL1 LINE L1 -209 2298 1340 383 306 89 0 chr3 2708586 2708867 -224815711 - HAL1 LINE L1 -1218 1289 984 432 288 113 19 chr3 2709054 2709266 -224815312 - HAL1 LINE L1 -1842 665 434 206 342 57 19 chr3 2709608 2709766 -224814812 + L2 LINE L2 2917 3080 -192 1877 154 3 13 chr3 2709783 2710094 -224814484 - AluJb SINE Alu -4 308 1 2189 71 39 3 chr3 2710866 2711149 -224813429 + AluY SINE Alu 1 293 -18 487 227 302 0 chr3 2711151 2711323 -224813255 + MIR SINE MIR 29 252 -10 220 214 18 18 chr3 2711367 2711423 -224813155 + (CA)n Simple_repeat Simple_repeat 1 56 0 427 315 34 0 chr3 2711470 2711616 -224812962 - MER117 DNA MER1_type -36 161 11 388 352 49 6 chr3 2711918 2712080 -224812498 - MIR SINE MIR -13 249 81 714 254 215 0 chr3 2712348 2712553 -224812025 - MIR SINE MIR -8 254 6 462 306 0 0 chr3 2713272 2713383 -224811195 + MER81 DNA DNA 4 114 0 240 274 140 18 chr3 2713555 2713661 -224810917 - L1MC/D LINE L1 -2273 5535 5401 1682 152 72 4 chr3 2713661 2713938 -224810640 + AluSx SINE Alu 1 296 -16 240 274 140 18 chr3 2713938 2713995 -224810583 - L1MC/D LINE L1 -2407 5401 5352 265 368 60 8 chr3 2715062 2715179 -224809399 - L2 LINE L2 0 3313 3191 2430 69 3 0 chr3 2715289 2715593 -224808985 + AluY SINE Alu 1 305 -6 258 282 0 113 chr3 2716262 2716386 -224808192 + MIR3 SINE MIR 87 196 -12 428 255 135 20 chr3 2716896 2717096 -224807482 + MIR SINE MIR 31 253 -9 1055 130 0 34 chr3 2722217 2722394 -224802184 - AluSg/x SINE Alu -15 294 124 256 267 67 33 chr3 2725547 2725637 -224798941 - MIR SINE MIR -157 105 13 1890 151 18 0 chr3 2725877 2726162 -224798416 - AluJb SINE Alu -14 298 9 235 254 211 7 chr3 2727058 2727200 -224797378 + L1MC/D LINE L1 4531 4701 -1445 275 282 57 0 chr3 2727237 2727361 -224797217 + L1MC/D LINE L1 5695 5825 -1983 245 295 105 11 chr3 2727948 2728043 -224796535 + L3 LINE CR1 1196 1299 -278 1688 188 40 3 chr3 2728134 2728459 -224796119 - MER1B DNA MER1_type 0 337 1 563 280 13 13 chr3 2728712 2728862 -224795716 - MIR SINE MIR -79 183 34 360 232 36 94 chr3 2728866 2728895 -224795683 - L2 LINE L2 -2 3311 3282 2557 98 30 6 chr3 2728895 2729261 -224795317 + THE1C LTR MaLR 1 375 0 360 232 36 94 chr3 2729261 2729369 -224795209 - L2 LINE L2 -31 3282 3182 26 0 0 0 chr3 2730430 2730456 -224794122 + AT_rich Low_complexity Low_complexity 1 26 0 547 300 143 29 chr3 2730727 2731271 -224793307 + L1ME LINE L1 4633 5238 -908 348 236 183 21 chr3 2731307 2731498 -224793080 + L1ME LINE L1 5296 5517 -2291 1688 80 0 0 chr3 2731540 2731753 -224792825 - AluSg SINE Alu -97 213 1 292 211 273 19 chr3 2731888 2732049 -224792529 + L1MC4a LINE L1 5748 5949 -1859 22 0 0 0 chr3 2733430 2733452 -224791126 + AT_rich Low_complexity Low_complexity 1 22 0 1805 164 7 20 chr3 2733452 2733750 -224790828 - AluJb SINE Alu -18 294 1 1095 267 70 26 chr3 2733779 2734344 -224790234 + L2 LINE L2 2570 3154 -159 21 36 0 0 chr3 2734377 2734405 -224790173 + AT_rich Low_complexity Low_complexity 1 28 0 199 298 0 0 chr3 2734482 2734539 -224790039 + L2 LINE L2 3255 3311 -2 305 195 26 26 chr3 2734554 2734631 -224789947 + MLT1L LTR MaLR 3 79 -536 365 303 48 0 chr3 2735237 2735402 -224789176 + Charlie8 DNA MER1_type 85 257 -2160 468 0 0 0 chr3 2735416 2735468 -224789110 + (TG)n Simple_repeat Simple_repeat 2 53 0 210 296 59 89 chr3 2736649 2736784 -224787794 + MIR SINE MIR 17 147 -61 626 242 65 107 chr3 2736793 2737148 -224787430 - MLT1I LTR MaLR -7 402 63 201 237 0 0 chr3 2737240 2737299 -224787279 + (TA)n Simple_repeat Simple_repeat 1 59 0 300 290 30 53 chr3 2738027 2738158 -224786420 - L2 LINE L2 -4 3309 3182 293 235 43 17 chr3 2738690 2738805 -224785773 + L1ME LINE L1 5630 5747 -374 330 267 0 11 chr3 2738814 2738904 -224785674 + LTR67 LTR ERVL 460 548 -9 459 63 0 0 chr3 2738904 2738967 -224785611 + (CA)n Simple_repeat Simple_repeat 2 64 0 31 76 0 0 chr3 2739217 2739283 -224785295 + AT_rich Low_complexity Low_complexity 1 66 0 285 296 61 17 chr3 2739635 2739750 -224784828 - MIR SINE MIR -6 256 137 22 35 0 0 chr3 2740228 2740257 -224784321 + AT_rich Low_complexity Low_complexity 1 29 0 811 211 80 0 chr3 2741837 2742012 -224782566 + MLT1D LTR MaLR 4 192 -313 1256 191 17 39 chr3 2742012 2742243 -224782335 + AluJo SINE Alu 1 226 -86 648 222 63 16 chr3 2743150 2743339 -224781239 + MIR SINE MIR 44 241 -21 961 183 121 92 chr3 2743357 2743874 -224780704 + LTR36 LTR ERV1 1 611 0 730 236 220 0 chr3 2744036 2744494 -224780084 + LTR50 LTR ERVL 140 795 0 960 287 89 2 chr3 2744571 2744965 -224779613 + L1ME3A LINE L1 5291 5718 -452 422 78 16 0 chr3 2744965 2745029 -224779549 + MER41B LTR ERV1 481 545 -90 1061 242 66 44 chr3 2745075 2745503 -224779075 + L1ME3A LINE L1 5730 6162 -8 2221 129 3 0 chr3 2745602 2745912 -224778666 - AluSq SINE Alu -2 311 1 209 373 15 0 chr3 2746079 2746146 -224778432 + L2 LINE L2 3198 3265 -7 199 208 260 39 chr3 2746515 2746592 -224777986 + MIR3 SINE MIR 63 156 -52 387 256 53 0 chr3 2746648 2746781 -224777797 - MER117 DNA MER1_type -56 141 2 231 291 0 0 chr3 2746783 2746838 -224777740 + MIR3 SINE MIR 154 208 0 333 274 183 7 chr3 2747745 2747898 -224776680 + MIR3 SINE MIR 15 194 -14 186 283 170 28 chr3 2748274 2748380 -224776198 + MIR3 SINE MIR 84 204 -4 220 324 14 0 chr3 2748625 2748699 -224775879 + (TA)n Simple_repeat Simple_repeat 1 75 0 1889 197 16 101 chr3 2748879 2749426 -224775152 - MLT1D LTR MaLR -2 503 3 360 364 23 6 chr3 2749518 2749694 -224774884 - MIR3 SINE MIR -13 195 17 216 171 0 0 chr3 2750069 2750104 -224774474 + (TCCA)n Simple_repeat Simple_repeat 3 37 0 216 210 65 32 chr3 2750132 2750194 -224774384 - L2 LINE L2 -42 3230 3167 298 347 200 7 chr3 2750214 2750364 -224774214 + MER5A DNA MER1_type 1 179 -10 2734 103 8 5 chr3 2751261 2751648 -224772930 - L1PB1 LINE L1 -1 6150 5763 23 0 0 0 chr3 2751707 2751730 -224772848 + AT_rich Low_complexity Low_complexity 1 23 0 438 333 0 0 chr3 2751738 2751849 -224772729 - L2 LINE L2 -5 3267 3157 959 138 0 7 chr3 2752968 2753113 -224771465 + AluSg/x SINE Alu 136 279 -30 395 259 114 32 chr3 2753508 2753666 -224770912 + MIR3 SINE MIR 38 208 0 3242 138 14 68 chr3 2753832 2754033 -224770545 + LTR26B LTR ERV1 4 214 -317 1604 174 19 47 chr3 2754033 2754350 -224770228 + AluJb SINE Alu 1 308 -4 3242 138 14 68 chr3 2754350 2754706 -224769872 + LTR26B LTR ERV1 214 531 0 817 258 33 16 chr3 2755007 2755189 -224769389 - MER5A DNA MER1_type -4 185 1 1154 164 116 58 chr3 2755274 2755585 -224768993 + MLT1D LTR MaLR 12 340 -165 261 119 48 0 chr3 2755561 2755603 -224768975 - MLT1D LTR MaLR -154 351 308 * 580 294 99 14 chr3 2756432 2756653 -224767925 - MIR SINE MIR -5 257 18 2255 99 3 10 chr3 2756828 2757142 -224767436 - AluSx SINE Alu 0 312 1 993 215 45 0 chr3 2757663 2757863 -224766715 - MER3 DNA MER1_type 0 209 1 311 301 68 20 chr3 2758109 2758255 -224766323 - MIR SINE MIR -61 201 49 337 258 13 0 chr3 2758256 2758343 -224766235 - MIR SINE MIR -92 116 40 442 306 25 13 chr3 2758524 2758681 -224765897 - MIR SINE MIR 0 262 104 5415 129 16 5 chr3 2759735 2760551 -224764027 + L1MC1 LINE L1 5509 6333 0 542 239 43 111 chr3 2760821 2760963 -224763615 + Charlie8 DNA MER1_type 2 123 -218 2145 109 0 50 chr3 2760963 2761284 -224763294 - AluSx SINE Alu -3 309 5 542 239 43 111 chr3 2761284 2761375 -224763203 + Charlie8 DNA MER1_type 123 219 -122 272 375 13 33 chr3 2761678 2761830 -224762748 + MIR3 SINE MIR 21 169 -39 345 232 72 65 chr3 2761886 2762024 -224762554 - MER103 DNA DNA -18 148 10 624 317 176 32 chr3 2763130 2763471 -224761107 + L3 LINE CR1 751 1140 -437 2433 121 22 25 chr3 2763474 2763839 -224760739 - THE1B LTR MaLR 0 364 1 189 288 225 0 chr3 2763931 2764011 -224760567 + L3 LINE CR1 1188 1285 -292 1274 177 42 103 chr3 2764083 2764394 -224760184 - AluJo SINE Alu -20 292 1 1721 170 10 10 chr3 2764409 2764709 -224759869 - AluJo SINE Alu -12 300 1 1928 147 3 13 chr3 2765643 2765956 -224758622 + AluJb SINE Alu 1 310 -2 254 336 70 31 chr3 2766191 2766319 -224758259 - L2 LINE L2 -8 3264 3132 2351 132 33 33 chr3 2767091 2767385 -224757193 + THE1B LTR MaLR 1 297 -67 1994 125 3 14 chr3 2767385 2767682 -224756896 - AluSx SINE Alu -18 294 1 2351 132 33 33 chr3 2767682 2767751 -224756827 + THE1B LTR MaLR 296 364 0 4922 172 27 34 chr3 2769275 2770661 -224753917 - L1MB3 LINE L1 -2 6181 4810 193 276 0 52 chr3 2770771 2770829 -224753749 - MIR3 SINE MIR -146 62 8 439 239 92 23 chr3 2771000 2771130 -224753448 + MLT1J2 LTR MaLR 37 175 -275 349 289 47 57 chr3 2771469 2771680 -224752898 - MLT1I LTR MaLR -26 383 175 2055 109 35 109 chr3 2771680 2772085 -224752493 - THE1C LTR MaLR 0 375 1 747 290 136 18 chr3 2772094 2772535 -224752043 + L2 LINE L2 2821 3313 0 407 300 110 11 chr3 2773853 2774054 -224750524 - MIR SINE MIR -25 237 19 2249 185 41 30 chr3 2775417 2775881 -224748697 + MLT2B1 LTR ERVL 1 469 -51 273 196 21 93 chr3 2775920 2776017 -224748561 - L1MC4 LINE L1 -1339 6703 6614 * 276 170 0 130 chr3 2775931 2776031 -224748547 + L1MC4 LINE L1 6617 6703 -1339 213 175 0 0 chr3 2776031 2776071 -224748507 + (TATG)n Simple_repeat Simple_repeat 4 43 0 422 16 0 109 chr3 2776074 2776138 -224748440 + MLT2B1 LTR ERVL 464 520 0 690 297 72 43 chr3 2776231 2776671 -224747907 - Charlie8 DNA MER1_type -2145 272 1 21 0 0 0 chr3 2777155 2777176 -224747402 + AT_rich Low_complexity Low_complexity 1 21 0 243 0 0 0 chr3 2778497 2778524 -224746054 + (TG)n Simple_repeat Simple_repeat 1 27 0 1291 243 14 3 chr3 2778573 2778857 -224745721 - AluJb SINE Alu -15 287 1 27 49 0 0 chr3 2778857 2778898 -224745680 + AT_rich Low_complexity Low_complexity 1 41 0 798 188 17 104 chr3 2779316 2779556 -224745022 - MER20 DNA MER1_type 0 219 1 1335 215 87 36 chr3 2779677 2780083 -224744495 + MER113 DNA MER1_type? 3 440 -81 4294 139 67 10 chr3 2780083 2780771 -224743807 + LTR8A LTR ERV1 1 727 0 1335 215 87 36 chr3 2780771 2780857 -224743721 + MER113 DNA MER1_type? 440 520 -1 220 286 48 24 chr3 2781088 2781172 -224743406 + MIR SINE MIR 155 240 -22 1988 145 0 16 chr3 2781194 2781497 -224743081 - AluSx SINE Alu -14 298 1 28 0 0 0 chr3 2781497 2781525 -224743053 + AT_rich Low_complexity Low_complexity 1 28 0 577 277 141 5 chr3 2782041 2782247 -224742331 - MIR SINE MIR -6 256 23 1590 142 47 4 chr3 2782263 2782629 -224741949 + LTR47A LTR ERVL 1 436 -16 1953 169 156 5 chr3 2782629 2783001 -224741577 - MSTA LTR MaLR 0 428 1 1590 142 47 4 chr3 2783001 2783019 -224741559 + LTR47A LTR ERVL 436 452 0 307 293 75 34 chr3 2783033 2783180 -224741398 + LTR47A-int LTR ERVL 15 167 -5176 699 171 43 41 chr3 2783322 2783516 -224741062 + LTR49-int LTR ERV1 2009 2290 -2590 1570 181 4 0 chr3 2783533 2783814 -224740764 + MER41B LTR ERV1 1 282 -353 4759 221 82 41 chr3 2783817 2784038 -224740540 + LTR49-int LTR ERV1 891 1101 -3090 892 129 0 30 chr3 2784038 2784196 -224740382 + FLAM_C SINE Alu 1 154 0 4759 221 82 41 chr3 2784196 2785195 -224739383 + LTR49-int LTR ERV1 1101 2165 -2026 1819 116 41 7 chr3 2785195 2785489 -224739089 + MLT2A1 LTR ERVL 1 304 -140 261 0 0 0 chr3 2785509 2785538 -224739040 + (CA)n Simple_repeat Simple_repeat 2 30 0 394 36 18 18 chr3 2785542 2785597 -224738981 + MLT2A1 LTR ERVL 399 453 0 4812 142 47 58 chr3 2785598 2787079 -224737499 + LTR49-int LTR ERV1 4411 6064 -258 2338 148 133 2 chr3 2787091 2787491 -224737087 + LTR47A LTR ERVL 1 452 0 277 209 132 62 chr3 2788898 2789027 -224735551 + MLT1J2 LTR MaLR 3 140 -310 1714 174 98 113 chr3 2789295 2789509 -224735069 + MLT1D LTR MaLR 1 217 -288 3621 158 6 2 chr3 2789509 2790034 -224734544 + MER1A DNA MER1_type 1 527 0 1714 174 98 113 chr3 2790034 2790332 -224734246 + MLT1D LTR MaLR 217 505 0 302 291 122 17 chr3 2790422 2790594 -224733984 - MIR SINE MIR 0 262 73 4187 118 24 5 chr3 2790665 2791256 -224733322 + LTR43 LTR ERV1 1 602 0 214 308 55 62 chr3 2791879 2791951 -224732627 + MIR SINE MIR 72 143 -119 2289 83 48 0 chr3 2791951 2792240 -224732338 + AluSc SINE Alu 1 303 -6 214 308 55 62 chr3 2792240 2792313 -224732265 + MIR SINE MIR 143 216 -46 238 329 0 37 chr3 2792854 2792936 -224731642 + L2 LINE L2 3192 3270 -2 786 216 32 42 chr3 2793189 2793379 -224731199 + MIR SINE MIR 37 224 -38 237 143 24 24 chr3 2793396 2793438 -224731140 + MLT1D LTR MaLR 1 42 -463 1649 183 62 45 chr3 2793446 2793557 -224731021 + MLT2D LTR ERVL 1 109 -305 2393 60 0 13 chr3 2793557 2793856 -224730722 - AluY SINE Alu -16 295 1 1649 183 62 45 chr3 2793856 2793966 -224730612 + MLT2D LTR ERVL 109 216 -198 2775 195 22 68 chr3 2793966 2794608 -224729970 - LTR9 LTR ERV1 0 612 1 1649 183 62 45 chr3 2794608 2794789 -224729789 + MLT2D LTR ERVL 216 411 -3 1185 254 81 47 chr3 2794791 2795236 -224729342 + MLT1D LTR MaLR 46 505 0 234 222 139 28 chr3 2795918 2796026 -224728552 + MER113 DNA MER1_type? 1 120 -401 2076 128 6 10 chr3 2796627 2796971 -224727607 + AluSx SINE Alu 1 343 0 333 183 42 0 chr3 2798708 2798779 -224725799 - MER116 DNA Mariner -6 74 1 1445 258 11 8 chr3 2799205 2799561 -224725017 - MLT1A2 LTR MaLR -14 360 4 671 306 73 25 chr3 2799748 2800271 -224724307 - L1ME4a LINE L1 -224 5897 5350 352 262 69 48 chr3 2800483 2800628 -224723950 - MLT1K LTR MaLR -167 421 274 321 267 11 7 chr3 2800922 2801043 -224723535 + LTR43 LTR ERV1 223 472 -207 253 229 148 0 chr3 2801890 2801951 -224722627 + L2 LINE L2 3201 3270 -2 249 291 0 25 chr3 2801954 2802033 -224722545 + MIR3 SINE MIR 132 208 0 403 296 23 109 chr3 2802204 2802461 -224722117 + MIR SINE MIR 19 253 -9 30 0 0 0 chr3 2803173 2803203 -224721375 + AT_rich Low_complexity Low_complexity 1 30 0 1334 201 0 76 chr3 2803203 2803297 -224721281 - AluJo SINE Alu -32 280 180 1911 182 12 6 chr3 2803297 2803638 -224720940 - MER61A LTR ERV1 0 343 1 1334 201 0 76 chr3 2803638 2803846 -224720732 - AluJo SINE Alu -132 180 1 458 243 87 28 chr3 2804047 2804207 -224720371 + MIR3 SINE MIR 20 180 -48 304 264 110 110 chr3 2804335 2804562 -224720016 + MIR SINE MIR 4 230 -32 1337 155 4 52 chr3 2804563 2804815 -224719763 - THE1B LTR MaLR 0 364 125 4905 67 1 3 chr3 2804815 2805473 -224719105 - THE1B-int LTR MaLR -923 657 1 1997 115 81 32 chr3 2805473 2805820 -224718758 - THE1B LTR MaLR 0 364 1 188 235 0 0 chr3 2805880 2805914 -224718664 + MIR3 SINE MIR 151 184 -24 1904 147 0 13 chr3 2805914 2806214 -224718364 - AluSx SINE Alu -16 296 1 477 40 40 0 chr3 2806372 2806448 -224718130 + (TCTA)n Simple_repeat Simple_repeat 3 81 0 1743 179 37 10 chr3 2806456 2806858 -224717720 - L1ME1 LINE L1 -7 6159 5747 548 228 8 0 chr3 2806902 2807029 -224717549 - L1ME1 LINE L1 -521 5645 5518 1165 239 84 16 chr3 2807039 2807407 -224717171 - MLT1D LTR MaLR 0 505 113 1122 154 58 92 chr3 2807419 2807753 -224716825 + AluJb SINE Alu 1 324 0 475 169 24 0 chr3 2807796 2807879 -224716699 - MLT1D LTR MaLR -417 88 4 1579 189 70 39 chr3 2807890 2808060 -224716518 - L1ME1 LINE L1 -662 5504 5341 2208 124 7 0 chr3 2808060 2808367 -224716211 - AluSx SINE Alu -3 309 1 1579 189 70 39 chr3 2808367 2808775 -224715803 - L1ME1 LINE L1 -825 5341 4902 8102 121 11 0 chr3 2909355 2911408 -224613170 + L1PA5 LINE L1 4092 6154 0 287 350 8 8 chr3 2912137 2912254 -224612324 + L2 LINE L2 3150 3266 -6 1371 172 196 0 chr3 2913415 2913561 -224611017 - AluJo SINE Alu -3 299 183 2123 102 16 7 chr3 2913561 2913864 -224610714 - AluY SINE Alu -5 306 1 1371 172 196 0 chr3 2913864 2913967 -224610611 - AluJo SINE Alu -119 183 1 2279 204 51 44 chr3 2913967 2914517 -224610061 + MLT2B3 LTR ERVL 1 554 0 856 215 82 0 chr3 2914527 2914746 -224609832 - L1ME1 LINE L1 -2929 3217 2981 990 120 0 0 chr3 2914779 2914912 -224609666 - AluSq/x SINE Alu -180 133 1 1010 189 28 35 chr3 2914939 2915087 -224609491 - L1ME1 LINE L1 -3170 2976 2829 1247 218 19 85 chr3 2915087 2915404 -224609174 - AluJb SINE Alu -5 297 2 1010 189 28 35 chr3 2915404 2915509 -224609069 - L1ME1 LINE L1 -3317 2829 2725 507 304 60 0 chr3 2915525 2915693 -224608885 + L1M4 LINE L1 3656 3833 -2313 2296 93 21 0 chr3 2915693 2915984 -224608594 - AluSg1 SINE Alu -12 297 1 1780 85 16 0 chr3 2915984 2916231 -224608347 - PABL_A-int LTR ERV1 -4546 469 219 449 255 10 0 chr3 2916349 2916447 -224608131 - MIR SINE MIR -154 108 10 906 143 0 0 chr3 2918543 2918676 -224605902 + FLAM_C SINE Alu 1 133 -10 2298 88 7 0 chr3 2918682 2918976 -224605602 + AluSp SINE Alu 1 296 -17 2543 40 3 0 chr3 2919406 2919703 -224604875 - AluY SINE Alu -13 298 1 312 27 0 0 chr3 2921737 2921774 -224602804 + (TGAA)n Simple_repeat Simple_repeat 4 40 0 1046 190 56 93 chr3 2923231 2923288 -224601290 - L1M4 LINE L1 -1481 4665 4607 2274 96 3 10 chr3 2923288 2923589 -224600989 + AluSp SINE Alu 1 299 -14 1046 190 56 93 chr3 2923589 2923941 -224600637 - L1M4 LINE L1 -1539 4607 4271 425 316 40 11 chr3 2926583 2926757 -224597821 + MIR SINE MIR 48 226 -36 2607 160 35 56 chr3 2927173 2928052 -224596526 - L1M4 LINE L1 -439 5745 4856 1820 152 7 14 chr3 2928052 2928373 -224596205 - AluJb SINE Alu 0 319 1 249 313 119 0 chr3 2928752 2928819 -224595759 + MIR SINE MIR 15 89 -173 704 171 8 8 chr3 2928821 2928938 -224595640 + FLAM_C SINE Alu 2 118 -25 2235 39 0 4 chr3 2928945 2929204 -224595374 + AluY SINE Alu 40 297 -14 290 224 196 42 chr3 2929250 2929393 -224595185 - L2 LINE L2 -3 3310 3146 180 111 0 0 chr3 2930678 2930705 -224593873 + (GAAA)n Simple_repeat Simple_repeat 2 28 0 217 377 57 0 chr3 2930898 2931020 -224593558 + MIR SINE MIR 39 167 -95 265 333 44 9 chr3 2931146 2931260 -224593318 - MIR3 SINE MIR -24 184 67 1190 242 79 0 chr3 2931295 2931638 -224592940 + L1MD3 LINE L1 3586 3955 -2191 670 193 28 7 chr3 2931667 2931812 -224592766 + MLT2D LTR ERVL 71 218 -196 1488 253 96 11 chr3 2931813 2932354 -224592224 + L1MD3 LINE L1 4774 5360 -786 1575 198 104 18 chr3 2932357 2933414 -224591164 + L1MD3 LINE L1 5464 6428 -1567 321 26 0 0 chr3 2933414 2933452 -224591126 + (CA)n Simple_repeat Simple_repeat 2 39 0 1575 198 104 18 chr3 2933452 2934454 -224590124 + L1MD3 LINE L1 6428 7995 0 313 247 216 6 chr3 2934467 2934629 -224589949 + MIR SINE MIR 67 262 0 287 350 8 8 chr3 2935583 2935700 -224588878 - L2 LINE L2 -6 3266 3150 16467 48 7 2 chr3 2936429 2939142 -224585436 - L1PA5 LINE L1 0 6154 3431 315 125 21 0 chr3 2939192 2939240 -224585338 - MADE1 DNA Mariner 0 80 32 204 318 20 80 chr3 2940188 2940339 -224584239 + MIR SINE MIR 10 151 -111 771 222 13 0 chr3 2940381 2940534 -224584044 + MER63A DNA MER1_type 50 204 -6 204 212 23 23 chr3 2943152 2943200 -224581378 - MIR SINE MIR -106 102 54 502 222 121 38 chr3 2944250 2944489 -224580089 - L1M4 LINE L1 -809 5337 5079 715 182 25 19 chr3 2944514 2944673 -224579905 + MER33 DNA MER1_type 15 174 -150 239 225 72 45 chr3 2944673 2944784 -224579794 - L1MCb LINE L1 -4904 1141 1028 2280 112 3 0 chr3 2944815 2945127 -224579451 - AluSq SINE Alu 0 313 1 1278 281 89 53 chr3 2945826 2945936 -224578642 + MLT1E3 LTR MaLR 1 106 -518 1599 163 96 39 chr3 2945936 2946291 -224578287 + THE1C LTR MaLR 1 375 0 1278 281 89 53 chr3 2946291 2946778 -224577800 + MLT1E3 LTR MaLR 106 619 -5 32 26 0 0 chr3 2946846 2946885 -224577693 + AT_rich Low_complexity Low_complexity 1 39 0 339 372 51 60 chr3 2947808 2948222 -224576356 - L2 LINE L2 -6 3266 2857 566 236 106 25 chr3 2948279 2948516 -224576062 + MER5C DNA MER1_type 1 256 -68 279 288 254 0 chr3 2949627 2949769 -224574809 + MIR SINE MIR 37 213 -49 334 254 56 16 chr3 2949861 2949987 -224574591 + MER104 DNA Tc2 26 156 -24 2302 113 0 3 chr3 2950163 2950472 -224574106 - AluSg SINE Alu -2 308 1 493 125 48 19 chr3 2950474 2950578 -224574000 - L1PA8 LINE L1 0 6172 6066 2084 142 3 0 chr3 2951792 2952103 -224572475 + AluSx SINE Alu 1 312 0 200 262 98 0 chr3 2952932 2952993 -224571585 + MIR SINE MIR 80 146 -116 8443 125 6 17 chr3 2953734 2955116 -224569462 - L1P LINE L1 -795 5351 3985 554 159 24 56 chr3 2955622 2955732 -224568846 + MER53 DNA DNA 1 108 -81 2322 189 38 6 chr3 2955732 2956228 -224568350 + MER67D LTR ERV1 1 512 -2 554 159 24 56 chr3 2956228 2956243 -224568335 + MER53 DNA DNA 108 122 -67 180 0 0 0 chr3 2956303 2956323 -224568255 + (T)n Simple_repeat Simple_repeat 1 20 0 357 333 50 6 chr3 2956363 2956522 -224568056 + MIR SINE MIR 85 250 -12 2820 13 0 0 chr3 2957379 2957689 -224566889 - AluY SINE Alu -1 310 1 257 265 73 15 chr3 2958055 2958123 -224566455 - MIR SINE MIR -108 100 29 26 50 0 0 chr3 2958138 2958178 -224566400 + AT_rich Low_complexity Low_complexity 1 40 0 1489 303 48 32 chr3 2958310 2958940 -224565638 - MLT2F LTR ERVL -6 657 18 1911 173 0 0 chr3 2958958 2959264 -224565314 + AluJo SINE Alu 2 307 -5 22 56 0 0 chr3 2959375 2959411 -224565167 + AT_rich Low_complexity Low_complexity 1 36 0 530 255 24 34 chr3 2961595 2961803 -224562775 + L1MC/D LINE L1 5614 5819 -1989 21 36 0 0 chr3 2961832 2961860 -224562718 + AT_rich Low_complexity Low_complexity 1 28 0 817 212 19 66 chr3 2962507 2962719 -224561859 - MLT1A2 LTR MaLR 0 374 173 414 0 0 0 chr3 2962744 2962790 -224561788 + (GA)n Simple_repeat Simple_repeat 1 46 0 693 191 79 20 chr3 2962811 2962963 -224561615 - MLT1A2 LTR MaLR -213 161 1 230 318 34 34 chr3 2962993 2963081 -224561497 - MIR SINE MIR -89 119 32 4212 144 30 7 chr3 2963134 2963871 -224560707 + Tigger3b DNA MER2_type 1 754 -477 551 248 83 0 chr3 2963887 2964032 -224560546 - FAM SINE Alu -18 157 1 291 139 18 4 chr3 2964035 2964092 -224560486 - AluJo SINE Alu -166 136 85 4475 148 7 44 chr3 2964115 2964933 -224559645 + L1PA16 LINE L1 5377 6164 -2 36 53 0 0 chr3 2965007 2965064 -224559514 + AT_rich Low_complexity Low_complexity 1 57 0 23 0 0 0 chr3 2965192 2965215 -224559363 + AT_rich Low_complexity Low_complexity 1 23 0 285 314 183 22 chr3 2966345 2966482 -224558096 - MLT1J2 LTR MaLR -38 412 254 357 338 7 28 chr3 2966670 2966812 -224557766 - MIR SINE MIR -116 146 8 25 90 0 0 chr3 2967261 2967328 -224557250 + AT_rich Low_complexity Low_complexity 1 67 0 1561 173 10 17 chr3 2967853 2967866 -224556712 - AluJo SINE Alu -9 303 291 186 43 0 0 chr3 2967866 2967889 -224556689 + (TC)n Simple_repeat Simple_repeat 2 24 0 1561 173 10 17 chr3 2967889 2968170 -224556408 - AluJo SINE Alu -21 291 11 180 246 35 0 chr3 2968315 2968372 -224556206 - MIR SINE MIR -10 252 194 333 335 112 28 chr3 2968395 2968610 -224555968 - MIR SINE MIR 0 262 30 730 252 50 12 chr3 2969295 2969671 -224554907 + MLT1J1 LTR MaLR 1 440 -10 407 244 12 0 chr3 2969728 2969814 -224554764 - MLT1J1 LTR MaLR -120 326 240 2380 69 13 3 chr3 2969894 2970197 -224554381 + AluSg SINE Alu 1 306 -4 2077 121 0 3 chr3 2970246 2970552 -224554026 + AluSx SINE Alu 3 307 0 3010 162 0 6 chr3 2970895 2971384 -224553194 - MER66B LTR ERV1 0 486 1 267 31 0 0 chr3 2971935 2971967 -224552611 + (TG)n Simple_repeat Simple_repeat 1 32 0 1337 274 47 24 chr3 2972192 2972616 -224551962 + MLT1J1 LTR MaLR 2 435 -11 24 0 0 0 chr3 2972646 2972670 -224551908 + AT_rich Low_complexity Low_complexity 1 24 0 260 374 39 39 chr3 2973306 2973662 -224550916 + L2 LINE L2 2364 2719 -595 322 292 63 66 chr3 2973768 2974134 -224550444 - HAL1b LINE L1 -6 2501 750 341 329 0 0 chr3 2974292 2974371 -224550207 + MER91A DNA MER1_type 2 80 -116 328 360 97 23 chr3 2974456 2974756 -224549822 - L2 LINE L2 -1258 2056 1735 1949 192 11 8 chr3 2974931 2975295 -224549283 + MLT1A1 LTR MaLR 1 365 0 22 0 0 0 chr3 2975945 2975967 -224548611 + AT_rich Low_complexity Low_complexity 1 22 0 1992 144 0 0 chr3 2976570 2976861 -224547717 + AluSx SINE Alu 11 301 -11 1436 210 39 3 chr3 2977487 2977773 -224546805 - AluJb SINE Alu -6 296 1 233 278 11 100 chr3 2978756 2978846 -224545732 + MIR SINE MIR 51 132 -130 207 356 7 68 chr3 2978926 2979072 -224545506 + MIR3 SINE MIR 59 195 -13 332 255 20 41 chr3 2979676 2979774 -224544804 + MIR3 SINE MIR 76 171 -37 449 339 27 27 chr3 2979795 2979978 -224544600 - MER5A DNA MER1_type -5 184 2 630 284 74 16 chr3 2980492 2980735 -224543843 + MIR SINE MIR 6 262 0 246 306 194 0 chr3 2981019 2981117 -224543461 - L2 LINE L2 0 3313 3197 342 67 0 0 chr3 2981276 2981321 -224543257 + (T)n Simple_repeat Simple_repeat 1 45 0 391 319 14 35 chr3 2981808 2981952 -224542626 - MER91A DNA MER1_type -54 142 2 295 247 13 13 chr3 2983611 2983688 -224540890 - MLT1I LTR MaLR -4 405 329 453 315 99 9 chr3 2984191 2984413 -224540165 + MIR SINE MIR 6 247 -15 28 0 0 0 chr3 2984988 2985016 -224539562 + AT_rich Low_complexity Low_complexity 1 28 0 180 0 0 0 chr3 2985999 2986019 -224538559 + (A)n Simple_repeat Simple_repeat 1 20 0 967 116 0 0 chr3 2986942 2987071 -224537507 + AluSq SINE Alu 1 129 -183 1960 129 0 36 chr3 2987083 2987392 -224537186 + AluSx SINE Alu 1 298 -14 325 259 19 83 chr3 2987546 2987620 -224536958 + MER102b DNA MER1_type 229 295 -1133 2133 177 50 17 chr3 2987620 2988038 -224536540 - MSTB1 LTR MaLR 0 432 1 325 259 19 83 chr3 2988038 2988071 -224536507 + MER102b DNA MER1_type 295 329 -12 1749 152 0 71 chr3 2988206 2988529 -224536049 - AluJb SINE Alu -12 300 1 256 347 88 7 chr3 2988624 2988771 -224535807 - MIR3 SINE MIR -12 196 38 296 250 29 0 chr3 2988812 2988880 -224535698 + MIR SINE MIR 185 254 -8 208 343 14 0 chr3 2990746 2990816 -224533762 - L2 LINE L2 -2 3270 3200 387 251 106 67 chr3 2991107 2991286 -224533292 + MIR SINE MIR 77 262 0 682 295 70 7 chr3 2992213 2992668 -224531910 + MLT1K LTR MaLR 24 582 -6 21 0 0 0 chr3 2992952 2992973 -224531605 + AT_rich Low_complexity Low_complexity 1 21 0 1034 113 94 6 chr3 2993347 2993507 -224531071 + AluSq SINE Alu 129 302 -11 329 275 25 0 chr3 2993994 2994074 -224530504 + L2 LINE L2 3232 3313 0 237 196 0 0 chr3 2994571 2994627 -224529951 + (ATGGTG)n Simple_repeat Simple_repeat 4 59 0 25 31 0 0 chr3 2995296 2995328 -224529250 + AT_rich Low_complexity Low_complexity 1 32 0 53 30 0 0 chr3 2995707 2995774 -224528804 + AT_rich Low_complexity Low_complexity 1 67 0 39 50 0 0 chr3 2996739 2996799 -224527779 + AT_rich Low_complexity Low_complexity 1 60 0 2219 201 62 67 chr3 2996899 2997482 -224527096 - L1MDa LINE L1 -5935 605 26 2081 105 4 0 chr3 2997561 2997837 -224526741 + AluSq SINE Alu 1 277 -36 31 0 0 0 chr3 2997856 2997887 -224526691 + AT_rich Low_complexity Low_complexity 1 31 0 934 226 5 5 chr3 2998495 2998685 -224525893 + MER58A DNA MER1_type 34 223 -1 8050 12 0 0 chr3 2998996 3000598 -224523980 - L1HS LINE L1 0 6155 4554 453 330 76 21 chr3 3000666 3000957 -224523621 + L2 LINE L2 2159 2465 -849 618 291 180 26 chr3 3000957 3001389 -224523189 - L1MEd LINE L1 -4908 1211 838 1582 110 12 31 chr3 3001389 3001643 -224522935 - AluSq SINE Alu 0 313 65 618 291 180 26 chr3 3001643 3001714 -224522864 - L1MEd LINE L1 -5281 838 779 21 0 0 0 chr3 3001780 3001801 -224522777 + AT_rich Low_complexity Low_complexity 1 21 0 673 223 0 0 chr3 3001846 3001967 -224522611 - FLAM_A SINE Alu -12 121 1 425 306 123 56 chr3 3002039 3002554 -224522024 + L2 LINE L2 2683 3239 -74 647 183 8 16 chr3 3002554 3002680 -224521898 - FLAM_A SINE Alu -4 129 5 425 306 123 56 chr3 3002680 3002748 -224521830 + L2 LINE L2 3239 3301 -12 201 74 0 0 chr3 3003599 3003626 -224520952 + (TA)n Simple_repeat Simple_repeat 2 28 0 1062 139 41 0 chr3 3003626 3003798 -224520780 - AluSg/x SINE Alu 0 312 134 204 350 122 50 chr3 3003837 3004017 -224520561 - MIR SINE MIR -50 212 20 253 282 118 47 chr3 3004388 3004558 -224520020 + MER5A DNA MER1_type 7 188 -1 622 286 104 50 chr3 3006200 3006602 -224517976 + HAL1b LINE L1 344 574 -774 22 35 0 0 chr3 3007169 3007198 -224517380 + AT_rich Low_complexity Low_complexity 1 29 0 479 183 104 24 chr3 3007406 3007570 -224517008 - MER104 DNA MER2_type -3 177 1 318 185 8 100 chr3 3008238 3008368 -224516210 + L1ME4a LINE L1 5966 6083 -38 6700 126 20 53 chr3 3008414 3009686 -224514892 + Tigger3b DNA MER2_type 3 1231 0 302 240 0 94 chr3 3009686 3009782 -224514796 + L1MC4 LINE L1 6617 6703 -1339 243 0 0 0 chr3 3009782 3009809 -224514769 + (TA)n Simple_repeat Simple_repeat 1 27 0 696 183 72 20 chr3 3010340 3010493 -224514085 + MER5A DNA MER1_type 1 161 -28 369 75 0 0 chr3 3010613 3010666 -224513912 + (CA)n Simple_repeat Simple_repeat 2 54 0 312 71 0 0 chr3 3011028 3011070 -224513508 - L1MA10 LINE L1 -10 6324 6283 378 165 13 13 chr3 3011070 3011149 -224513429 + L1MB1 LINE L1 6004 6082 -107 677 159 0 0 chr3 3011213 3011320 -224513258 - AluJb SINE Alu -205 107 1 25 0 0 0 chr3 3011579 3011604 -224512974 + AT_rich Low_complexity Low_complexity 1 25 0 1482 122 215 4 chr3 3011640 3011886 -224512692 + AluSg1 SINE Alu 1 298 -11 549 326 73 55 chr3 3011911 3012294 -224512284 + L2 LINE L2 2919 3308 -5 899 203 115 5 chr3 3012319 3012511 -224512067 - MER58A DNA MER1_type -1 223 11 284 93 0 0 chr3 3012684 3012727 -224511851 - MADE1 DNA Mariner -37 43 1 1279 167 8 16 chr3 3012727 3012984 -224511594 - L1MC3 LINE L1 -24 7761 7507 195 358 20 54 chr3 3013185 3013333 -224511245 + MIR SINE MIR 70 212 -50 925 183 30 35 chr3 3014170 3014372 -224510206 + MER3 DNA MER1_type 9 209 0 448 281 191 20 chr3 3015010 3015209 -224509369 - MIR SINE MIR -6 256 24 528 286 5 77 chr3 3015655 3015919 -224508659 - MIR SINE MIR -8 254 13 195 250 0 0 chr3 3016092 3016132 -224508446 - MIR SINE MIR -73 135 96 438 20 0 0 chr3 3017736 3017787 -224506791 + (CA)n Simple_repeat Simple_repeat 2 52 0 398 309 172 0 chr3 3018565 3018769 -224505809 - MIR SINE MIR -6 256 18 2164 57 4 0 chr3 3019779 3020101 -224504477 - AluY SINE Alu 0 323 1 696 242 55 0 chr3 3020241 3020406 -224504172 + MER5A DNA MER1_type 15 188 -1 2435 52 10 0 chr3 3020635 3020943 -224503635 - AluY SINE Alu 0 311 1 190 265 0 20 chr3 3021404 3021453 -224503125 + L2 LINE L2 3209 3256 -16 323 57 0 22 chr3 3022148 3022201 -224502377 + MLT2A2 LTR ERVL 411 453 0 41160 70 12 5 chr3 3022201 3022669 -224501909 + HERVL-A2 LTR ERVL 1 465 -5189 2027 135 26 3 chr3 3022669 3022973 -224501605 - AluSq SINE Alu -2 311 1 41160 70 12 5 chr3 3022973 3027793 -224496785 + HERVL-A2 LTR ERVL 465 5323 -331 485 224 11 17 chr3 3027950 3028129 -224496449 + (TA)n Simple_repeat Simple_repeat 2 179 0 2688 108 23 8 chr3 3028140 3028538 -224496040 - MLT2A1 LTR ERVL -40 404 1 2640 72 0 0 chr3 3028538 3028883 -224495695 - HERVL-A1 LTR ERVL 0 5654 5310 369 158 0 0 chr3 3028885 3028967 -224495611 + (TA)n Simple_repeat Simple_repeat 2 83 0 239 62 125 21 chr3 3028968 3029016 -224495562 + MLT2A2 LTR ERVL 401 453 0 597 165 0 10 chr3 3029016 3029119 -224495459 - L1 LINE L1 -1174 4972 4871 1845 144 34 42 chr3 3029119 3029529 -224495049 + L1MA4 LINE L1 5894 6300 0 272 297 36 27 chr3 3030730 3030841 -224493737 + MIR SINE MIR 36 147 -61 3542 113 12 0 chr3 3030841 3031343 -224493235 + L1PA7 LINE L1 692 1199 -5262 23900 98 15 8 chr3 3031349 3035727 -224488851 + L1PA7 LINE L1 2067 6469 0 6746 112 8 2 chr3 3035728 3036768 -224487810 + L1PA7 LINE L1 2665 3710 -2751 10649 96 9 1 chr3 3036768 3039086 -224485492 + L1PA7 LINE L1 4130 6456 -13 214 267 120 13 chr3 3039391 3039466 -224485112 - MER5A DNA MER1_type -73 116 34 528 312 12 18 chr3 3040477 3040647 -224483931 + MIR SINE MIR 29 197 -65 297 356 0 0 chr3 3040800 3040887 -224483691 + L2 LINE L2 3227 3313 0 2002 117 3 36 chr3 3040907 3041216 -224483362 + AluSx SINE Alu 1 299 -13 395 303 30 30 chr3 3041413 3041578 -224483000 - MIR SINE MIR -89 173 9 3264 247 74 44 chr3 3042022 3042378 -224482200 - L1MC4 LINE L1 -327 7715 7371 1228 202 132 0 chr3 3042378 3042636 -224481942 + AluJo SINE Alu 4 295 -7 3264 247 74 44 chr3 3042636 3043500 -224481078 - L1MC4 LINE L1 -671 7371 6459 2602 125 0 0 chr3 3045933 3046308 -224478270 + THE1C LTR MaLR 1 375 0 27 0 0 0 chr3 3046609 3046636 -224477942 + AT_rich Low_complexity Low_complexity 1 27 0 225 368 123 0 chr3 3046656 3046770 -224477808 + L2 LINE L2 3137 3264 -8 280 230 27 0 chr3 3046939 3047013 -224477565 - MIR SINE MIR -3 259 184 367 225 0 0 chr3 3047268 3047339 -224477239 + MIR SINE MIR 77 147 -115 184 320 26 26 chr3 3047791 3047869 -224476709 + MIR SINE MIR 159 236 -26 1708 191 0 3 chr3 3048668 3048972 -224475606 + AluJo SINE Alu 1 303 -9 418 51 0 17 chr3 3049168 3049227 -224475351 + (TG)n Simple_repeat Simple_repeat 2 59 0 317 348 62 12 chr3 3049487 3049648 -224474930 + L1MEc LINE L1 426 594 -6013 1640 180 23 3 chr3 3049680 3049980 -224474598 + AluJb SINE Alu 1 306 -6 492 276 120 31 chr3 3050119 3050659 -224473919 + L1MEc LINE L1 1107 1694 -4732 728 211 65 60 chr3 3050725 3050862 -224473716 - MER58A DNA MER1_type -2198 222 82 1102 209 73 48 chr3 3050862 3051216 -224473362 - MLT1A1 LTR MaLR -2 363 1 728 211 65 60 chr3 3051216 3051263 -224473315 - MER58A DNA MER1_type -2338 82 37 399 315 51 30 chr3 3051288 3051523 -224473055 + L1MEc LINE L1 2091 2330 -4277 453 229 46 106 chr3 3051575 3051877 -224472701 - MLT1H LTR MaLR -38 511 228 30 27 0 0 chr3 3051934 3051971 -224472607 + AT_rich Low_complexity Low_complexity 1 37 0 467 221 116 53 chr3 3052016 3052319 -224472259 + L1MEc LINE L1 1304 1625 -4801 1163 158 51 111 chr3 3052476 3052833 -224471745 - MER21A LTR ERV1 -498 365 1 355 293 33 14 chr3 3052897 3053088 -224471490 + L1MEc LINE L1 3534 3729 -2697 464 356 25 22 chr3 3053123 3053440 -224471138 + L1MEc LINE L1 3887 4204 -2222 387 297 10 35 chr3 3053573 3053775 -224470803 + L1MEc LINE L1 4307 4503 -1923 303 121 11 17 chr3 3053781 3053849 -224470729 + L1MA7 LINE L1 6038 6104 -187 2904 147 36 8 chr3 3053849 3054352 -224470226 - Tigger3(Golem) DNA MER2_type 0 3029 2513 2036 207 22 12 chr3 3054358 3054764 -224469814 - MER47B DNA MER2_type -8 410 1 462 261 48 35 chr3 3054769 3055079 -224469499 + L1M4 LINE L1 3030 3343 -2803 539 276 0 6 chr3 3055093 3055249 -224469329 + L1ME3 LINE L1 6003 6157 -5 361 317 0 19 chr3 3056232 3056336 -224468242 - L2 LINE L2 -17 3255 3154 678 314 105 32 chr3 3057501 3057976 -224466602 - L2 LINE L2 0 3313 2804 613 179 0 8 chr3 3058015 3058132 -224466446 + Tigger2a DNA MER2_type 2 117 -317 7235 40 0 0 chr3 3058158 3059123 -224465455 - L1PA5 LINE L1 -2 6152 5175 1208 118 0 0 chr3 3059126 3059296 -224465282 - AluY SINE Alu -10 301 132 2102 138 21 0 chr3 3059338 3059663 -224464915 + Tigger2a DNA MER2_type 103 434 0 847 308 83 11 chr3 3059776 3060319 -224464259 - MLT2F LTR ERVL 0 663 1 744 296 9 5 chr3 3061284 3061500 -224463078 - MIR SINE MIR 0 262 46 791 233 91 25 chr3 3061779 3062286 -224462292 + MLT1G1 LTR MaLR 1 589 -1 535 288 23 28 chr3 3064047 3064224 -224460354 - MIR SINE MIR -8 254 79 491 218 73 8 chr3 3064229 3064353 -224460225 + MER39 LTR ERV1 1 132 -575 220 302 94 10 chr3 3065700 3065796 -224458782 - L2 LINE L2 -4 3309 3206 23 0 0 0 chr3 3066488 3066511 -224458067 + AT_rich Low_complexity Low_complexity 1 23 0 2029 106 0 0 chr3 3067227 3067491 -224457087 - AluY SINE Alu -16 295 32 260 174 0 0 chr3 3069636 3069682 -224454896 - L2 LINE L2 -4 3268 3223 811 212 0 32 chr3 3071013 3071130 -224453448 + MER3 DNA MER1_type 26 136 -73 1564 161 94 25 chr3 3071130 3071416 -224453162 - AluJb SINE Alu -6 306 1 811 212 0 32 chr3 3071416 3071487 -224453091 + MER3 DNA MER1_type 136 208 -1 277 277 0 0 chr3 3071434 3071499 -224453079 - MER3 DNA MER1_type -108 101 37 * 21 0 0 0 chr3 3071580 3071601 -224452977 + AT_rich Low_complexity Low_complexity 1 21 0 379 296 51 23 chr3 3071681 3071857 -224452721 - MIR SINE MIR -65 197 17 190 205 26 0 chr3 3071863 3071902 -224452676 - L2 LINE L2 -12 3260 3221 343 214 48 68 chr3 3072322 3072380 -224452198 + MER5A DNA MER1_type 12 69 -120 312 27 0 0 chr3 3072380 3072417 -224452161 + (CA)n Simple_repeat Simple_repeat 2 38 0 343 214 48 68 chr3 3072417 3072461 -224452117 + MER5A DNA MER1_type 69 112 -77 507 318 74 56 chr3 3072553 3073091 -224451487 + L1MEd LINE L1 266 813 -5306 24 53 0 0 chr3 3073092 3073130 -224451448 + AT_rich Low_complexity Low_complexity 1 38 0 3719 196 38 6 chr3 3073264 3073952 -224450626 + L1MA4 LINE L1 10 719 -4609 539 202 25 10 chr3 3073954 3074218 -224450360 + GA-rich Low_complexity Low_complexity 1 267 0 2665 143 56 78 chr3 3074219 3074592 -224449986 + L1MA4 LINE L1 680 1060 -4427 1622 196 0 19 chr3 3074592 3074909 -224449669 + AluJb SINE Alu 1 311 -1 2665 143 56 78 chr3 3074909 3075038 -224449540 + L1MA4 LINE L1 1060 1190 -4297 1728 176 4 4 chr3 3075038 3075317 -224449261 + AluJb SINE Alu 1 279 -33 225 0 48 48 chr3 3075318 3075360 -224449218 + (CAAA)n Simple_repeat Simple_repeat 2 43 0 2665 143 56 78 chr3 3075360 3075614 -224448964 + L1MA4 LINE L1 1189 1422 -4065 * 3955 171 24 13 chr3 3075600 3076440 -224448138 + L1MA4 LINE L1 3779 4627 -1701 7882 180 21 28 chr3 3076442 3078110 -224446468 + L1PA10 LINE L1 920 2575 -3571 9000 119 10 10 chr3 3078118 3080357 -224444221 + L1PA10 LINE L1 3942 6168 0 2098 121 0 0 chr3 3080365 3080666 -224443912 + AluSg SINE Alu 1 301 0 1716 162 22 22 chr3 3080668 3081038 -224443540 + L1MA4 LINE L1 4604 4973 -1355 657 151 0 0 chr3 3081063 3081182 -224443396 + GA-rich Low_complexity Low_complexity 4 122 0 5486 176 22 9 chr3 3081182 3082682 -224441896 + L1MA4 LINE L1 4967 6482 0 809 284 103 36 chr3 3082693 3083817 -224440761 + L1ME LINE L1 4487 5684 -486 1817 173 7 0 chr3 3084518 3084818 -224439760 + AluJb SINE Alu 1 302 -10 273 128 0 0 chr3 3085107 3085154 -224439424 + (GGAA)n Simple_repeat Simple_repeat 1 47 0 2435 52 10 0 chr3 3087425 3087733 -224436845 + AluY SINE Alu 1 311 0 696 242 55 0 chr3 3087962 3088127 -224436451 - MER5A DNA MER1_type -1 188 15 2165 57 4 0 chr3 3088267 3088589 -224435989 + AluY SINE Alu 1 323 0 398 309 172 0 chr3 3089599 3089803 -224434775 + MIR SINE MIR 18 256 -6 438 20 0 0 chr3 3090581 3090632 -224433946 + (TG)n Simple_repeat Simple_repeat 2 52 0 195 250 0 0 chr3 3092236 3092276 -224432302 + MIR SINE MIR 96 135 -73 528 286 5 77 chr3 3092449 3092713 -224431865 + MIR SINE MIR 13 254 -8 448 281 191 20 chr3 3093159 3093358 -224431220 + MIR SINE MIR 24 256 -6 925 183 30 35 chr3 3093996 3094198 -224430380 - MER3 DNA MER1_type 0 209 9 195 358 20 54 chr3 3095035 3095183 -224429395 - MIR SINE MIR -50 212 70 1279 167 8 16 chr3 3095384 3095641 -224428937 + L1MC3 LINE L1 7507 7761 -24 284 93 0 0 chr3 3095641 3095684 -224428894 + MADE1 DNA Mariner 1 43 -37 899 203 115 5 chr3 3095857 3096049 -224428529 + MER58A DNA MER1_type 11 223 -1 549 326 73 55 chr3 3096074 3096457 -224428121 - L2 LINE L2 -5 3308 2919 1482 122 215 4 chr3 3096482 3096728 -224427850 - AluSg1 SINE Alu -11 298 1 25 0 0 0 chr3 3096764 3096789 -224427789 + AT_rich Low_complexity Low_complexity 1 25 0 677 159 0 0 chr3 3097048 3097155 -224427423 + AluJb SINE Alu 1 107 -205 392 161 12 12 chr3 3097219 3097300 -224427278 - L1MB1 LINE L1 -107 6082 6002 312 71 0 0 chr3 3097300 3097340 -224427238 + L1MA10 LINE L1 6283 6324 -10 369 75 0 0 chr3 3097702 3097755 -224426823 + (TG)n Simple_repeat Simple_repeat 2 54 0 696 183 72 20 chr3 3097875 3098028 -224426550 - MER5A DNA MER1_type -28 161 1 243 0 0 0 chr3 3098559 3098586 -224425992 + (TA)n Simple_repeat Simple_repeat 2 28 0 302 240 0 94 chr3 3098586 3098682 -224425896 - L1MC4 LINE L1 -1339 6703 6617 6700 126 20 53 chr3 3098682 3099954 -224424624 - Tigger3b DNA MER2_type 0 1231 3 318 185 8 100 chr3 3100000 3100130 -224424448 - L1ME4a LINE L1 -38 6083 5966 479 183 104 24 chr3 3100798 3100962 -224423616 + MER104 DNA MER2_type 1 177 -3 22 35 0 0 chr3 3101170 3101199 -224423379 + AT_rich Low_complexity Low_complexity 1 29 0 622 286 104 50 chr3 3101766 3102168 -224422410 - HAL1b LINE L1 -774 574 344 253 282 118 47 chr3 3103810 3103980 -224420598 - MER5A DNA MER1_type -1 188 7 204 350 122 50 chr3 3104351 3104531 -224420047 + MIR SINE MIR 20 212 -50 1062 139 41 0 chr3 3104570 3104742 -224419836 + AluSg/x SINE Alu 134 312 0 201 74 0 0 chr3 3104742 3104769 -224419809 + (TA)n Simple_repeat Simple_repeat 2 28 0 398 305 123 57 chr3 3105622 3105690 -224418888 - L2 LINE L2 -12 3301 3239 647 183 8 16 chr3 3105690 3105816 -224418762 + FLAM_A SINE Alu 5 129 -4 398 305 123 57 chr3 3105816 3106332 -224418246 - L2 LINE L2 -74 3239 2683 673 223 0 0 chr3 3106404 3106525 -224418053 + FLAM_A SINE Alu 1 121 -12 21 0 0 0 chr3 3106570 3106591 -224417987 + AT_rich Low_complexity Low_complexity 1 21 0 618 291 180 26 chr3 3106657 3106728 -224417850 + L1MEd LINE L1 779 838 -5281 1582 110 12 31 chr3 3106728 3106982 -224417596 + AluSq SINE Alu 65 313 0 618 291 180 26 chr3 3106982 3107414 -224417164 + L1MEd LINE L1 838 1211 -4908 453 330 76 21 chr3 3107414 3107705 -224416873 - L2 LINE L2 -849 2465 2159 8009 13 0 0 chr3 3107773 3109375 -224415203 + L1HS LINE L1 4554 6155 0 896 230 5 5 chr3 3109688 3109875 -224414703 - MER58A DNA MER1_type -4 220 34 6991 51 11 7 chr3 3109923 3110883 -224413695 + L1PA6 LINE L1 5184 6147 -7 237 139 0 0 chr3 3111006 3111049 -224413529 + (TG)n Simple_repeat Simple_repeat 2 44 0 21 0 0 0 chr3 3111302 3111323 -224413255 + AT_rich Low_complexity Low_complexity 1 21 0 225 296 21 63 chr3 3111646 3111788 -224412790 + L3b LINE CR1 1317 1452 -131 228 67 0 0 chr3 3112027 3112057 -224412521 + (TCCA)n Simple_repeat Simple_repeat 4 33 0 382 305 241 12 chr3 3112057 3112306 -224412272 - L2 LINE L2 -2 3311 3006 322 286 32 84 chr3 3113448 3113602 -224410976 - MIR3 SINE MIR -27 181 36 357 233 0 29 chr3 3115593 3115696 -224408882 + LTR67 LTR ERVL 452 551 -6 776 329 80 6 chr3 3117648 3118010 -224406568 - LTR16C LTR ERVL -7 484 96 206 291 0 0 chr3 3120030 3120085 -224404493 - L2 LINE L2 -15 3298 3244 228 226 19 0 chr3 3120396 3120449 -224404129 - L2 LINE L2 -2 3270 3217 497 292 49 15 chr3 3120486 3120753 -224403825 + L1MC5 LINE L1 7474 7749 -212 26 0 0 0 chr3 3120757 3120783 -224403795 + AT_rich Low_complexity Low_complexity 1 26 0 564 56 0 0 chr3 3122087 3122159 -224402419 + (TTCC)n Simple_repeat Simple_repeat 4 75 0 220 304 43 0 chr3 3122383 3122452 -224402126 + L2 LINE L2 3201 3272 0 270 306 41 10 chr3 3123672 3123770 -224400808 - MLT1L LTR MaLR -350 265 165 267 167 139 0 chr3 3125582 3125654 -224398924 + MIR SINE MIR 178 259 -3 425 355 84 12 chr3 3126055 3126543 -224398035 - L1MC4a LINE L1 -1978 5830 5308 316 288 62 0 chr3 3126723 3126883 -224397695 - L1MC4a LINE L1 -1087 5059 4890 498 114 0 0 chr3 3127676 3127746 -224396832 + AluJ/FRAM SINE Alu 226 295 -17 364 235 163 60 chr3 3128180 3128346 -224396232 + MER20 DNA MER1_type 10 192 -27 1995 154 3 0 chr3 3128616 3128927 -224395651 - AluSx SINE Alu 0 312 1 316 257 81 0 chr3 3130115 3130189 -224394389 + L2 LINE L2 3233 3312 -1 311 304 61 9 chr3 3130251 3130366 -224394212 + MIR3 SINE MIR 34 154 -54 4163 114 35 31 chr3 3130658 3130980 -224393598 - L1MA2 LINE L1 0 6304 5985 2090 125 26 0 chr3 3130980 3131284 -224393294 - AluSp SINE Alu -1 312 1 4163 114 35 31 chr3 3131284 3131681 -224392897 - L1MA2 LINE L1 -319 5985 5582 1608 205 14 7 chr3 3131681 3131969 -224392609 - LTR10B LTR ERV1 0 547 258 10369 244 19 32 chr3 3132044 3135286 -224389292 - LTR10B-int LTR ERV1 0 7769 4185 1049 249 89 4 chr3 3135282 3135551 -224389027 - LTR10B-int LTR ERV1 -6353 296 5 * 1753 168 14 0 chr3 3135551 3135837 -224388741 - LTR10B LTR ERV1 0 547 258 1973 158 24 3 chr3 3135912 3136418 -224388160 - L1M1 LINE L1 -720 5585 5072 1197 147 96 97 chr3 3136685 3137043 -224387535 - MER4A LTR ERV1 0 664 261 379 110 132 55 chr3 3137043 3137134 -224387444 - MER4A LTR ERV1 -566 98 1 2101 122 0 4 chr3 3137318 3137597 -224386981 + AluSx SINE Alu 5 282 -30 317 309 0 73 chr3 3137626 3137762 -224386816 - L2 LINE L2 -21 3292 3167 974 241 106 20 chr3 3137872 3138175 -224386403 + MLT2D LTR ERVL 78 406 -8 210 306 178 22 chr3 3138205 3138385 -224386193 - L2 LINE L2 -217 3096 2889 1669 138 160 9 chr3 3138425 3138743 -224385835 + MSTA LTR MaLR 63 428 0 441 229 10 0 chr3 3140314 3140410 -224384168 - MER5A DNA MER1_type -83 106 10 1253 295 45 14 chr3 3140732 3141173 -224383405 + L1ME LINE L1 27 481 -5589 1792 241 97 11 chr3 3141238 3141876 -224382702 + L1M4 LINE L1 4475 5167 -979 2854 204 60 48 chr3 3141941 3142823 -224381755 + L1MC4 LINE L1 6936 7828 -214 21 36 0 0 chr3 3142907 3142935 -224381643 + AT_rich Low_complexity Low_complexity 1 28 0 727 131 37 0 chr3 3143158 3143265 -224381313 + MER4B LTR ERV1 500 610 0 2360 71 3 0 chr3 3143912 3144220 -224380358 - AluY SINE Alu -2 309 1 2120 113 0 26 chr3 3144659 3144968 -224379610 + AluSx SINE Alu 1 301 -11 246 32 0 0 chr3 3145773 3145804 -224378774 + (TG)n Simple_repeat Simple_repeat 1 31 0 884 213 0 24 chr3 3245920 3246089 -224278489 - FAM SINE Alu -10 165 1 499 275 76 28 chr3 3246358 3246569 -224278009 - MLT1J2 LTR MaLR -171 279 59 190 213 85 0 chr3 3246595 3246642 -224277936 - MIR SINE MIR -101 161 111 471 297 60 78 chr3 3246923 3247206 -224277372 + MLT1I LTR MaLR 132 409 0 234 292 66 29 chr3 3247333 3247470 -224277108 + L1MC/D LINE L1 5762 5903 -1905 411 273 12 61 chr3 3247556 3247721 -224276857 + L2 LINE L2 2558 2714 -600 2326 140 75 10 chr3 3248167 3248567 -224276011 - MSTA LTR MaLR 0 428 3 22 0 0 0 chr3 3248849 3248871 -224275707 + AT_rich Low_complexity Low_complexity 1 22 0 1859 176 7 10 chr3 3249155 3249461 -224275117 - AluJo SINE Alu -7 305 1 1977 168 40 6 chr3 3249506 3249858 -224274720 - THE1B LTR MaLR 0 364 1 420 342 51 6 chr3 3249907 3250065 -224274513 - MER5B DNA MER1_type -6 172 8 445 304 112 6 chr3 3250338 3250499 -224274079 - MIR3 SINE MIR -15 193 16 25 31 0 0 chr3 3252102 3252134 -224272444 + AT_rich Low_complexity Low_complexity 1 32 0 651 275 94 17 chr3 3252496 3252783 -224271795 - L1ME3A LINE L1 -341 5829 5521 2168 112 0 7 chr3 3252787 3253091 -224271487 + AluY SINE Alu 1 302 -9 4676 76 8 2 chr3 3253103 3253735 -224270843 + L1PA14 LINE L1 5526 6161 0 254 103 103 17 chr3 3254907 3254965 -224269613 - L1ME4a LINE L1 -18 6103 6041 214 326 116 14 chr3 3255032 3255170 -224269408 - L2 LINE L2 -4 3309 3158 222 351 15 37 chr3 3255182 3255316 -224269262 - L2 LINE L2 -263 3050 2920 946 202 0 22 chr3 3255559 3255737 -224268841 + FAM SINE Alu 1 174 -1 21 0 0 0 chr3 3256823 3256844 -224267734 + AT_rich Low_complexity Low_complexity 1 21 0 466 272 72 31 chr3 3257765 3257960 -224266618 + MIR SINE MIR 59 261 -1 3676 197 37 26 chr3 3258556 3259711 -224264867 + L1MB7 LINE L1 4959 6127 -57 301 175 0 0 chr3 3259747 3259810 -224264768 + L1MB7 LINE L1 6112 6174 -10 2260 60 46 0 chr3 3260198 3260481 -224264097 + AluSg SINE Alu 1 296 -14 22 0 0 0 chr3 3260711 3260733 -224263845 + AT_rich Low_complexity Low_complexity 1 22 0 28 71 0 0 chr3 3260850 3260906 -224263672 + AT_rich Low_complexity Low_complexity 1 56 0 221 269 216 15 chr3 3261057 3261191 -224263387 - MIR SINE MIR -28 234 74 2349 64 7 10 chr3 3261347 3261645 -224262933 + AluSq SINE Alu 1 297 -16 314 379 0 0 chr3 3261778 3261881 -224262697 - L3 LINE CR1 -40 1537 1435 213 205 0 0 chr3 3261886 3261925 -224262653 + (ATG)n Simple_repeat Simple_repeat 1 39 0 579 275 71 6 chr3 3261964 3262146 -224262432 - MIR SINE MIR -63 199 6 474 161 44 21 chr3 3262166 3262396 -224262182 + CT-rich Low_complexity Low_complexity 1 235 0 296 305 34 17 chr3 3262630 3262748 -224261830 + MIR SINE MIR 142 261 -1 294 29 0 0 chr3 3263313 3263348 -224261230 + (TG)n Simple_repeat Simple_repeat 2 36 0 203 79 0 79 chr3 3263795 3263833 -224260745 + (TTTTTA)n Simple_repeat Simple_repeat 1 35 0 246 226 85 104 chr3 3263934 3264007 -224260571 + L2 LINE L2 3210 3282 -31 1652 207 81 29 chr3 3264007 3264451 -224260127 - MLT1C LTR MaLR 0 467 1 246 226 85 104 chr3 3264451 3264483 -224260095 + L2 LINE L2 3282 3313 0 1428 216 71 31 chr3 3266513 3266962 -224257616 - MLT1C LTR MaLR 0 467 1 1036 200 16 5 chr3 3267244 3267434 -224257144 + AluJb SINE Alu 89 280 -32 270 0 0 0 chr3 3267442 3267472 -224257106 + (TA)n Simple_repeat Simple_repeat 1 30 0 * 342 0 0 0 chr3 3267471 3267509 -224257069 + (GA)n Simple_repeat Simple_repeat 2 39 0 419 242 167 0 chr3 3267579 3267699 -224256879 - MLT1H LTR MaLR -5 544 405 312 310 44 0 chr3 3268123 3268236 -224256342 + L2 LINE L2 3154 3271 -1 420 269 88 18 chr3 3268524 3268695 -224255883 + Charlie8 DNA MER1_type 85 267 -2150 206 209 90 45 chr3 3268942 3269009 -224255569 + MIR SINE MIR 105 174 -88 1665 171 32 20 chr3 3269149 3269247 -224255331 + L1MB7 LINE L1 5822 5917 -267 2471 105 19 8 chr3 3269247 3269618 -224254960 + THE1C LTR MaLR 1 375 0 1665 171 32 20 chr3 3269618 3269863 -224254715 + L1MB7 LINE L1 5917 6169 -15 3666 119 60 28 chr3 3269909 3270523 -224254055 + MER51A LTR ERV1 1 634 0 2114 183 47 10 chr3 3270542 3270947 -224253631 - MSTB LTR MaLR -6 420 1 2121 123 0 13 chr3 3271047 3271348 -224253230 - AluSg SINE Alu -13 297 1 229 380 71 5 chr3 3272311 3272495 -224252083 - L2 LINE L2 0 3313 3118 21 0 0 0 chr3 3273150 3273171 -224251407 + AT_rich Low_complexity Low_complexity 1 21 0 306 323 60 26 chr3 3273244 3273742 -224250836 - L1M4c LINE L1 -868 1875 1400 814 231 177 3 chr3 3273888 3274182 -224250396 - MLT1I LTR MaLR 0 409 65 2292 95 10 3 chr3 3274182 3274486 -224250092 - AluSq SINE Alu -7 306 1 457 343 122 34 chr3 3274631 3275098 -224249480 - L3 LINE CR1 -13 1564 1057 292 231 107 39 chr3 3275753 3276009 -224248569 + L1ME4a LINE L1 5536 5901 -220 2267 83 3 0 chr3 3278121 3278470 -224246108 - AluYb8 SINE Alu 0 350 1 189 0 0 0 chr3 3278640 3278661 -224245917 + (T)n Simple_repeat Simple_repeat 1 21 0 206 349 0 64 chr3 3278839 3278948 -224245630 + L2 LINE L2 2998 3099 -173 1967 138 14 0 chr3 3282297 3282580 -224241998 - AluSx SINE Alu -25 287 1 466 303 141 29 chr3 3283744 3284021 -224240557 - L2 LINE L2 -3 3310 3003 2160 98 3 3 chr3 3286122 3286409 -224238169 + AluSg SINE Alu 1 287 -23 2535 52 3 3 chr3 3287014 3287320 -224237258 + AluY SINE Alu 1 306 -5 1678 103 157 4 chr3 3287563 3287825 -224236753 + AluSq SINE Alu 2 303 0 2370 80 0 0 chr3 3288583 3288901 -224235677 - AluY SINE Alu 0 318 1 24 0 0 0 chr3 3289605 3289629 -224234949 + AT_rich Low_complexity Low_complexity 1 24 0 244 325 0 24 chr3 3291555 3291638 -224232940 + L3b LINE CR1 1250 1330 -253 239 304 173 52 chr3 3291665 3291856 -224232722 + MIR SINE MIR 1 214 -48 204 318 85 64 chr3 3291868 3292088 -224232490 + MIR SINE MIR 17 256 -6 315 333 21 21 chr3 3292797 3293034 -224231544 + HAL1 LINE L1 1424 1660 -847 2309 107 0 0 chr3 3293242 3293551 -224231027 + AluSq SINE Alu 1 309 -4 3757 154 20 70 chr3 3293569 3294434 -224230144 - L1MA9 LINE L1 0 6312 5492 446 80 0 93 chr3 3294436 3294511 -224230067 + L1MA9 LINE L1 5408 5475 -837 272 305 78 43 chr3 3294562 3294703 -224229875 - MER5B DNA MER1_type -28 150 5 21 36 0 0 chr3 3294721 3294749 -224229829 + AT_rich Low_complexity Low_complexity 1 28 0 385 178 100 0 chr3 3295165 3295255 -224229323 + L1MA9 LINE L1 6170 6268 -44 28 0 0 0 chr3 3295259 3295287 -224229291 + AT_rich Low_complexity Low_complexity 1 28 0 1178 206 95 27 chr3 3296077 3296339 -224228239 + AluJo SINE Alu 3 282 -30 857 327 107 52 chr3 3296345 3297615 -224226963 + L1M4 LINE L1 2652 3850 -2296 2272 39 32 0 chr3 3297615 3297898 -224226680 - AluY SINE Alu -19 292 1 857 327 107 52 chr3 3297898 3298239 -224226339 + L1M4 LINE L1 3850 4171 -1975 2492 55 0 0 chr3 3298239 3298547 -224226031 + AluY SINE Alu 1 308 -3 857 327 107 52 chr3 3298547 3298799 -224225779 + L1M4 LINE L1 4171 4619 -1527 249 248 50 40 chr3 3299322 3299423 -224225155 + L1M4 LINE L1 5675 5776 -408 605 203 144 20 chr3 3300099 3300252 -224224326 + MER5A DNA MER1_type 18 189 0 2884 88 2 0 chr3 3300363 3300759 -224223819 + L1PB2 LINE L1 5754 6150 -1 354 348 66 31 chr3 3300846 3301165 -224223413 - L2 LINE L2 -555 2759 2430 371 227 109 31 chr3 3301855 3301983 -224222595 + MIR SINE MIR 52 189 -73 23 0 0 0 chr3 3302043 3302066 -224222512 + AT_rich Low_complexity Low_complexity 1 23 0 1660 189 7 3 chr3 3302516 3302818 -224221760 - MLT1A1 LTR MaLR 0 365 63 2042 169 91 0 chr3 3302871 3303244 -224221334 - MSTA LTR MaLR -21 407 1 348 267 12 0 chr3 3303244 3303310 -224221268 - MLT1A1 LTR MaLR -305 69 3 332 299 28 28 chr3 3304235 3304379 -224220199 - L3 LINE CR1 -172 1405 1262 245 246 98 0 chr3 3304711 3304833 -224219745 - MER113 DNA MER1_type? -387 134 1 408 20 0 0 chr3 3305845 3305894 -224218684 + (TG)n Simple_repeat Simple_repeat 2 50 0 1292 161 0 5 chr3 3305895 3306112 -224218466 - MLT2C2 LTR ERVL -248 216 1 204 294 109 22 chr3 3306847 3306939 -224217639 + MIR SINE MIR 31 130 -78 1043 219 88 3 chr3 3307975 3308272 -224216306 - MER33 DNA MER1_type -1 323 2 286 269 157 60 chr3 3308442 3308658 -224215920 - MIR SINE MIR -6 256 20 196 308 117 25 chr3 3309673 3309793 -224214785 - MIR3 SINE MIR -74 134 4 224 100 25 0 chr3 3310467 3310507 -224214071 + (CA)n Simple_repeat Simple_repeat 2 42 0 283 239 30 0 chr3 3311263 3311330 -224213248 + L2 LINE L2 2481 2549 -765 448 169 48 32 chr3 3311330 3311454 -224213124 + LTR37A LTR ERV1 301 426 0 1745 158 3 52 chr3 3312172 3312482 -224212096 - AluJb SINE Alu -12 300 6 1087 237 71 40 chr3 3312745 3313099 -224211479 + MLT1A1 LTR MaLR 1 365 0 7448 36 7 1 chr3 3314135 3315623 -224208955 - L1PA5 LINE L1 -4 6150 4659 195 69 0 0 chr3 3318504 3318533 -224206045 + (TG)n Simple_repeat Simple_repeat 2 30 0 386 125 0 14 chr3 3319007 3319079 -224205499 + (CA)n Simple_repeat Simple_repeat 1 71 0 787 121 0 57 chr3 3319292 3319433 -224205145 - FLAM_A SINE Alu 0 133 1 207 235 0 0 chr3 3319891 3319942 -224204636 + (TA)n Simple_repeat Simple_repeat 1 51 0 5828 35 4 0 chr3 3319942 3320647 -224203931 - L1PA5 LINE L1 -11 6143 5436 1755 32 0 0 chr3 3320647 3320866 -224203712 + L1P LINE L1 5152 5370 -776 21 0 0 0 chr3 3321019 3321040 -224203538 + AT_rich Low_complexity Low_complexity 1 21 0 456 285 37 49 chr3 3321593 3321839 -224202739 + L1MC4 LINE L1 7549 7779 -216 401 208 0 26 chr3 3321839 3321916 -224202662 + MER7A DNA MER2_type 2 76 -272 * 1860 156 23 7 chr3 3321913 3322220 -224202358 + MER7A DNA MER2_type 36 345 -1 358 188 115 79 chr3 3322238 3322382 -224202196 + L1MC4 LINE L1 7780 7932 -110 1816 173 10 0 chr3 3322382 3322683 -224201895 + AluJb SINE Alu 1 304 -8 358 188 115 79 chr3 3322683 3322703 -224201875 + L1MC4 LINE L1 7932 7950 -92 2126 202 49 14 chr3 3322717 3323163 -224201415 + MLT1C LTR MaLR 1 462 -5 2814 167 6 28 chr3 3323178 3323717 -224200861 - L1MA7 LINE L1 -200 6091 5565 200 191 0 24 chr3 3324698 3324740 -224199838 - L2 LINE L2 -8 3305 3265 2294 96 3 10 chr3 3324963 3325277 -224199301 + AluSp SINE Alu 1 312 -1 351 318 59 42 chr3 3325620 3325859 -224198719 - MIR SINE MIR -13 249 7 1963 127 3 42 chr3 3325936 3326243 -224198335 + AluSx SINE Alu 3 297 -15 22 0 0 0 chr3 3326832 3326854 -224197724 + AT_rich Low_complexity Low_complexity 1 22 0 195 69 0 0 chr3 3327527 3327556 -224197022 + (TG)n Simple_repeat Simple_repeat 1 29 0 26 0 0 0 chr3 3327626 3327652 -224196926 + AT_rich Low_complexity Low_complexity 1 26 0 674 318 173 41 chr3 3327772 3328499 -224196079 - L2 LINE L2 -5 3308 2462 290 244 47 71 chr3 3328504 3328574 -224196004 + MIR SINE MIR 85 152 -110 865 191 30 78 chr3 3328574 3328804 -224195774 + MER20 DNA MER1_type 1 219 0 290 244 47 71 chr3 3328804 3328860 -224195718 + MIR SINE MIR 152 208 -54 25 0 0 0 chr3 3329946 3329971 -224194607 + AT_rich Low_complexity Low_complexity 1 25 0 24 0 0 0 chr3 3330160 3330184 -224194394 + AT_rich Low_complexity Low_complexity 1 24 0 350 280 65 11 chr3 3330548 3330641 -224193937 + MIR SINE MIR 30 127 -81 305 389 0 16 chr3 3330826 3330952 -224193626 - MIR3 SINE MIR -51 157 34 1943 127 7 39 chr3 3331026 3331334 -224193244 - AluSx SINE Alu -14 298 1 21 0 0 0 chr3 3331342 3331363 -224193215 + AT_rich Low_complexity Low_complexity 1 21 0 23 54 0 0 chr3 3333148 3333185 -224191393 + AT_rich Low_complexity Low_complexity 1 37 0 32 67 0 0 chr3 3333416 3333476 -224191102 + AT_rich Low_complexity Low_complexity 1 60 0 236 127 16 48 chr3 3333531 3333594 -224190984 + (TATAA)n Simple_repeat Simple_repeat 1 61 0 246 347 116 0 chr3 3333753 3333848 -224190730 + L2 LINE L2 3146 3251 -21 6446 134 54 14 chr3 3335025 3336139 -224188439 + Tigger1 DNA MER2_type 1 1158 -1260 6308 150 17 18 chr3 3336141 3337260 -224187318 + Tigger1 DNA MER2_type 1301 2418 0 283 214 14 14 chr3 3337260 3337330 -224187248 - MLT1J2 LTR MaLR -5 445 376 557 266 77 27 chr3 3337361 3337583 -224186995 - MLT1J2 LTR MaLR -159 291 59 190 213 85 0 chr3 3337609 3337656 -224186922 - MIR SINE MIR -101 161 111 471 297 60 78 chr3 3337937 3338220 -224186358 + MLT1I LTR MaLR 132 409 0 234 292 66 29 chr3 3338347 3338484 -224186094 + L1MC/D LINE L1 5762 5903 -1905 411 273 12 61 chr3 3338570 3338735 -224185843 + L2 LINE L2 2558 2714 -600 2326 140 75 10 chr3 3339181 3339581 -224184997 - MSTA LTR MaLR 0 428 3 22 0 0 0 chr3 3339863 3339885 -224184693 + AT_rich Low_complexity Low_complexity 1 22 0 1859 176 7 10 chr3 3340169 3340475 -224184103 - AluJo SINE Alu -7 305 1 1977 168 40 6 chr3 3340520 3340872 -224183706 - THE1B LTR MaLR 0 364 1 420 342 51 6 chr3 3340921 3341079 -224183499 - MER5B DNA MER1_type -6 172 8 445 304 112 6 chr3 3341352 3341513 -224183065 - MIR3 SINE MIR -15 193 16 25 31 0 0 chr3 3343116 3343148 -224181430 + AT_rich Low_complexity Low_complexity 1 32 0 651 275 94 17 chr3 3343510 3343797 -224180781 - L1ME3A LINE L1 -341 5829 5521 2219 108 0 7 chr3 3343801 3344108 -224180470 + AluY SINE Alu 1 305 -6 4658 78 8 2 chr3 3344120 3344752 -224179826 + L1PA14 LINE L1 5526 6161 0 254 103 103 17 chr3 3345922 3345980 -224178598 - L1ME4a LINE L1 -18 6103 6041 214 326 116 14 chr3 3346047 3346185 -224178393 - L2 LINE L2 -4 3309 3158 222 351 15 37 chr3 3346197 3346331 -224178247 - L2 LINE L2 -263 3050 2920 946 202 0 22 chr3 3346574 3346752 -224177826 + FAM SINE Alu 1 174 -1 189 292 0 21 chr3 3347371 3347419 -224177159 + MER5A DNA MER1_type 102 148 -41 21 0 0 0 chr3 3347838 3347859 -224176719 + AT_rich Low_complexity Low_complexity 1 21 0 466 272 72 31 chr3 3348780 3348975 -224175603 + MIR SINE MIR 59 261 -1 3748 193 40 29 chr3 3349571 3350728 -224173850 + L1MB7 LINE L1 4959 6127 -57 301 175 0 0 chr3 3350764 3350827 -224173751 + L1MB7 LINE L1 6112 6174 -10 380 292 84 78 chr3 3351332 3351654 -224172924 + LTR16C LTR ERVL 168 491 0 287 253 67 13 chr3 3351678 3351753 -224172825 + MIR SINE MIR 87 165 -97 998 175 74 23 chr3 3351754 3351971 -224172607 + MER68 LTR ERV1 1 228 -334 231 289 13 0 chr3 3352171 3352247 -224172331 - LTR48 LTR ERV1 -332 455 379 953 182 91 0 chr3 3352283 3352470 -224172108 - MER34C LTR ERV1 -381 204 1 791 225 41 118 chr3 3352471 3352836 -224171742 + MER68 LTR ERV1 226 562 0 291 265 36 0 chr3 3352841 3352924 -224171654 + MIR SINE MIR 167 252 -10 2240 59 3 40 chr3 3353069 3353373 -224171205 + AluY SINE Alu 1 293 -18 2045 109 0 7 chr3 3353434 3353753 -224170825 + AluSg1 SINE Alu 2 318 0 277 303 49 17 chr3 3354090 3354218 -224170360 + MIR SINE MIR 18 139 -69 709 286 35 17 chr3 3355041 3355272 -224169306 - MIR SINE MIR -26 236 2 1252 242 43 3 chr3 3356392 3356718 -224167860 + MER58B DNA MER1_type 2 340 -1 237 289 74 8 chr3 3356765 3356886 -224167692 - MIR SINE MIR -42 220 92 256 178 93 124 chr3 3357883 3358012 -224166566 - MIR SINE MIR -5 257 133 196 319 264 0 chr3 3358570 3358661 -224165917 - MIR SINE MIR -69 139 25 1906 153 0 10 chr3 3358907 3359214 -224165364 + AluJo SINE Alu 5 308 -4 643 189 31 20 chr3 3359214 3359410 -224165168 - MER33 DNA MER1_type -19 344 147 383 164 0 41 chr3 3359406 3359479 -224165099 - MER33 DNA MER1_type -250 74 5 * 21 36 0 0 chr3 3360437 3360465 -224164113 + AT_rich Low_complexity Low_complexity 1 28 0 243 240 60 40 chr3 3360634 3360734 -224163844 - MIR SINE MIR -7 255 154 463 287 67 22 chr3 3360777 3361000 -224163578 - L1ME LINE L1 -506 5615 5383 241 301 143 23 chr3 3361896 3362029 -224162549 - MIR3 SINE MIR -2 206 58 1820 105 35 0 chr3 3362335 3362592 -224161986 + AluSq SINE Alu 39 304 -9 25 0 0 0 chr3 3363613 3363638 -224160940 + AT_rich Low_complexity Low_complexity 1 25 0 252 293 96 3 chr3 3364433 3364588 -224159990 + MIR SINE MIR 21 190 -18 497 354 0 18 chr3 3365097 3365326 -224159252 - L2 LINE L2 -357 2957 2733 882 180 12 0 chr3 3365528 3365695 -224158883 + FRAM SINE Alu 1 168 -8 22 35 0 0 chr3 3366374 3366403 -224158175 + AT_rich Low_complexity Low_complexity 1 29 0 2360 31 7 0 chr3 3366936 3367225 -224157353 - AluY SINE Alu -20 291 1 248 313 70 0 chr3 3367713 3367828 -224156750 + MIR3 SINE MIR 62 184 -24 219 360 61 26 chr3 3368636 3368750 -224155828 + L3 LINE CR1 1459 1576 -1 274 260 26 0 chr3 3368763 3368840 -224155738 - MER116 DNA Mariner 0 80 2 22 0 0 0 chr3 3368967 3368989 -224155589 + AT_rich Low_complexity Low_complexity 1 22 0 24 32 0 0 chr3 3369312 3369343 -224155235 + AT_rich Low_complexity Low_complexity 1 31 0 24 0 0 0 chr3 3370419 3370443 -224154135 + AT_rich Low_complexity Low_complexity 1 24 0 438 72 87 14 chr3 3370638 3370707 -224153871 - L1PA11 LINE L1 -4 6170 6097 1200 87 174 0 chr3 3371625 3371821 -224152757 - MER30 DNA MER1_type 0 230 1 1707 139 49 69 chr3 3372222 3372568 -224152010 - MER44D DNA MER2_type 0 609 1 1219 200 69 7 chr3 3372582 3372887 -224151691 + MER33 DNA MER1_type 1 324 0 182 243 0 0 chr3 3373530 3373567 -224151011 - L2 LINE L2 -9 3263 3227 224 247 41 27 chr3 3376086 3376159 -224148419 + L2 LINE L2 2927 3000 -313 522 283 87 6 chr3 3376199 3376372 -224148206 + L2 LINE L2 3119 3305 -8 499 154 11 0 chr3 3377250 3377341 -224147237 + L1MA5A LINE L1 6204 6295 -2 263 329 12 24 chr3 3378459 3378544 -224146034 - MIR SINE MIR -109 99 16 207 258 32 16 chr3 3378612 3378674 -224145904 + MIR SINE MIR 95 157 -105 930 97 148 0 chr3 3378675 3378830 -224145748 + L1MA5A LINE L1 6075 6252 -45 220 220 0 0 chr3 3380179 3380229 -224144349 + (TTTAA)n Simple_repeat Simple_repeat 5 54 0 903 196 0 0 chr3 3381837 3382005 -224142573 - AluJb SINE Alu -7 305 138 6986 55 8 0 chr3 3382091 3383474 -224141104 - L1PA7 LINE L1 -1 6153 4766 9525 99 1 4 chr3 3383474 3384852 -224139726 + L1P3 LINE L1 2477 3849 -2297 7054 86 11 6 chr3 3384837 3385982 -224138596 + L1P3 LINE L1 4335 5473 -681 * 1983 120 3 7 chr3 3385982 3386265 -224138313 + AluSg SINE Alu 1 282 -28 189 0 0 0 chr3 3386265 3386286 -224138292 + (CAAT)n Simple_repeat Simple_repeat 2 22 0 7054 86 11 6 chr3 3386286 3386568 -224138010 + L1P3 LINE L1 5472 5766 -388 21 0 0 0 chr3 3386974 3386995 -224137583 + AT_rich Low_complexity Low_complexity 1 21 0 388 328 17 0 chr3 3386995 3387114 -224137464 + L2 LINE L2 3152 3272 -41 351 274 156 30 chr3 3387141 3387276 -224137302 - MIR SINE MIR -41 221 70 216 193 91 80 chr3 3387560 3387648 -224136930 - MIR SINE MIR -113 149 61 2128 119 39 33 chr3 3387648 3388010 -224136568 - THE1B LTR MaLR 0 364 1 781 196 78 44 chr3 3388390 3388594 -224135984 - MER20 DNA MER1_type -4 215 5 2009 123 0 19 chr3 3388894 3389231 -224135347 - AluSx SINE Alu 0 331 1 858 281 123 28 chr3 3390932 3391331 -224133247 - MLT1J LTR MaLR -4 507 71 184 359 123 0 chr3 3391422 3391528 -224133050 + L2 LINE L2 3151 3269 -3 6796 170 25 19 chr3 3391697 3393066 -224131512 - L1MA4 LINE L1 -11 6289 4903 3080 102 5 0 chr3 3393066 3393506 -224131072 - L1PB1 LINE L1 -1 6150 5709 6796 170 25 19 chr3 3393506 3394497 -224130081 - L1MA4 LINE L1 -1397 4903 3919 268 177 16 32 chr3 3394673 3394735 -224129843 + MARNA DNA Mariner 301 361 -225 195 253 67 80 chr3 3395785 3395860 -224128718 - L3b LINE CR1 0 1583 1510 355 227 113 78 chr3 3396130 3396271 -224128307 - L2 LINE L2 -731 2583 2438 185 306 54 54 chr3 3396280 3396391 -224128187 - MIR SINE MIR -7 255 145 200 287 230 0 chr3 3396654 3396741 -224127837 + L2 LINE L2 3188 3294 -19 260 158 18 0 chr3 3396834 3396891 -224127687 + (TCTA)n Simple_repeat Simple_repeat 3 60 0 2624 7 0 0 chr3 3398099 3398449 -224126129 - AluYb8 SINE Alu 0 350 1 859 130 7 0 chr3 3398455 3398593 -224125985 - L1PA15 LINE L1 -1 6164 6026 532 311 12 6 chr3 3399584 3399748 -224124830 + MIR SINE MIR 30 194 -68 309 214 36 71 chr3 3400135 3400247 -224124331 + L1ME4a LINE L1 5816 5923 -198 26 64 0 0 chr3 3400253 3400300 -224124278 + AT_rich Low_complexity Low_complexity 1 47 0 237 192 61 40 chr3 3400368 3400467 -224124111 - L1ME4a LINE L1 0 6121 6021 1971 132 0 0 chr3 3402301 3402581 -224121997 + AluSx SINE Alu 1 280 -32 270 0 0 0 chr3 3402583 3402613 -224121965 + (CAAA)n Simple_repeat Simple_repeat 2 31 0 2299 107 0 0 chr3 3403840 3404148 -224120430 + AluSg SINE Alu 1 308 -2 2094 128 0 3 chr3 3404369 3404674 -224119904 - AluSx SINE Alu -8 304 1 1444 74 0 0 chr3 3404921 3405097 -224119481 + AluSg/x SINE Alu 86 261 -49 538 287 148 26 chr3 3406839 3407069 -224117509 + MIR SINE MIR 5 262 0 303 272 129 0 chr3 3407674 3407821 -224116757 + L1MC4 LINE L1 7505 7670 -372 224 135 0 19 chr3 3407941 3407993 -224116585 + (TA)n Simple_repeat Simple_repeat 2 52 0 407 257 6 6 chr3 3408065 3408240 -224116338 + (TA)n Simple_repeat Simple_repeat 1 175 0 878 141 0 21 chr3 3408316 3408458 -224116120 - FLAM_C SINE Alu -2 141 3 292 271 25 76 chr3 3408660 3408778 -224115800 - MIR SINE MIR -139 123 12 274 282 182 9 chr3 3409454 3409564 -224115014 + MIR SINE MIR 108 236 -26 2360 161 50 27 chr3 3410859 3411374 -224113204 + L1MB7 LINE L1 5655 6181 -3 296 253 111 52 chr3 3413890 3414256 -224110322 - L1ME4a LINE L1 -93 6028 5536 481 343 122 34 chr3 3414909 3415376 -224109202 + L3 LINE CR1 1057 1564 -13 1710 177 0 3 chr3 3415520 3415987 -224108591 + AluJo SINE Alu 1 466 0 1465 39 0 0 chr3 3415808 3416030 -224108548 + (GAA)n Simple_repeat Simple_repeat 2 223 0 2556 147 19 2 chr3 3416352 3416775 -224107803 - MSTB1 LTR MaLR -2 430 1 25 51 0 0 chr3 3417361 3417400 -224107178 + AT_rich Low_complexity Low_complexity 1 39 0 529 276 17 17 chr3 3417550 3417724 -224106854 + MIR SINE MIR 88 261 -1 696 282 18 26 chr3 3418269 3418496 -224106082 + L1MEc LINE L1 55 279 -6117 227 355 48 0 chr3 3418822 3418946 -224105632 - L2 LINE L2 -469 2845 2716 225 0 0 0 chr3 3419914 3419939 -224104639 + (TTTTA)n Simple_repeat Simple_repeat 3 27 0 2053 117 0 7 chr3 3419945 3420235 -224104343 - AluSx SINE Alu -23 289 2 198 317 35 103 chr3 3420447 3420592 -224103986 + L2 LINE L2 3179 3313 0 2215 253 67 13 chr3 3420632 3421321 -224103257 - L1ME3 LINE L1 -8 6154 5429 459 239 103 19 chr3 3421419 3421574 -224103004 + MIR SINE MIR 95 262 0 886 197 121 10 chr3 3421644 3421842 -224102736 + MIR SINE MIR 43 262 0 915 256 183 28 chr3 3422043 3422469 -224102109 - MLT1H LTR MaLR 0 549 58 1671 163 13 3 chr3 3422554 3422855 -224101723 + AluJb SINE Alu 6 309 -3 8112 39 2 0 chr3 3422876 3424642 -224099936 - L1PA4 LINE L1 -1 6154 4389 317 298 37 42 chr3 3425667 3425882 -224098696 + L2 LINE L2 3021 3234 -79 1790 158 3 10 chr3 3425920 3426230 -224098348 - AluJb SINE Alu -2 310 3 271 309 0 0 chr3 3426233 3426317 -224098261 + L2 LINE L2 3225 3308 -5 1002 171 32 3 chr3 3427529 3427731 -224096847 - L1PB3 LINE L1 -10 6141 5940 22 0 0 0 chr3 3427749 3427771 -224096807 + AT_rich Low_complexity Low_complexity 1 22 0 2242 91 7 3 chr3 3428761 3429069 -224095509 - AluSc SINE Alu 0 309 1 183 184 0 0 chr3 3430188 3430226 -224094352 + (TG)n Simple_repeat Simple_repeat 2 39 0 2070 119 3 0 chr3 3430349 3430642 -224093936 + AluSg SINE Alu 1 294 -16 206 254 55 0 chr3 3431033 3431088 -224093490 + L2 LINE L2 3252 3309 -4 287 360 71 20 chr3 3431202 3431399 -224093179 - MIR SINE MIR -26 236 30 1497 189 107 42 chr3 3431402 3431804 -224092774 - L1MB8 LINE L1 -7 6171 5744 4007 187 30 23 chr3 3433837 3434739 -224089839 - L1MB7 LINE L1 -21 6399 5492 6416 230 57 61 chr3 3434749 3435284 -224089294 - L1MB7 LINE L1 -1420 4962 4426 180 0 0 0 chr3 3435284 3435304 -224089274 + (TTTTA)n Simple_repeat Simple_repeat 2 21 0 6416 230 57 61 chr3 3435304 3435354 -224089224 - L1MB7 LINE L1 -1956 4426 4377 2433 57 0 0 chr3 3435354 3435652 -224088926 + AluY SINE Alu 1 298 -13 6416 230 57 61 chr3 3435652 3437723 -224086855 - L1MB7 LINE L1 -2005 4377 2310 338 308 45 0 chr3 3437818 3437951 -224086627 - Charlie8 DNA MER1_type -2207 210 72 379 302 101 13 chr3 3438391 3438540 -224086038 + MIR3 SINE MIR 38 199 -9 255 240 0 0 chr3 3440147 3440197 -224084381 + L2 LINE L2 3264 3313 0 747 165 41 0 chr3 3440265 3440386 -224084192 + AluJo SINE Alu 34 159 -153 318 301 55 55 chr3 3441083 3441481 -224083097 + L1M4 LINE L1 2900 3297 -2849 24 67 0 0 chr3 3442540 3442585 -224081993 + AT_rich Low_complexity Low_complexity 1 45 0 22 0 0 0 chr3 3443228 3443250 -224081328 + AT_rich Low_complexity Low_complexity 1 22 0 728 241 29 0 chr3 3446266 3446436 -224078142 + FAM SINE Alu 1 175 0 1143 195 44 12 chr3 3446863 3447114 -224077464 - AluJo SINE Alu -26 286 28 236 262 0 0 chr3 3447142 3447184 -224077394 - AluJo SINE Alu -260 43 2 237 363 65 0 chr3 3447348 3447472 -224077106 - MIR SINE MIR 0 262 131 225 206 95 0 chr3 3447562 3447625 -224076953 + Tigger2 DNA MER2_type 1 69 -2649 * 2376 127 94 2 chr3 3447623 3448025 -224076553 + Tigger2 DNA MER2_type 2280 2718 0 183 316 53 79 chr3 3448256 3448446 -224076132 + MIR3 SINE MIR 6 190 -18 497 312 75 17 chr3 3449443 3449616 -224074962 + MIR SINE MIR 6 188 -74 2521 167 42 10 chr3 3450406 3450910 -224073668 + L1MB4 LINE L1 5659 6178 -2 1040 211 5 5 chr3 3452167 3452357 -224072221 - MER20 DNA MER1_type -1 218 29 1980 188 54 15 chr3 3453207 3453670 -224070908 + Charlie1b DNA MER1_type 2 482 -41 22 0 0 0 chr3 3453940 3453962 -224070616 + AT_rich Low_complexity Low_complexity 1 22 0 327 213 63 39 chr3 3453976 3454103 -224070475 + Charlie7 DNA MER1_type 2470 2599 -13 1918 202 42 77 chr3 3454190 3454686 -224069892 + MLT2B1 LTR ERVL 1 478 -42 387 0 0 0 chr3 3454686 3454729 -224069849 + (CA)n Simple_repeat Simple_repeat 2 44 0 1918 202 42 77 chr3 3454729 3454762 -224069816 + MLT2B1 LTR ERVL 478 511 -9 379 330 45 16 chr3 3454976 3455122 -224069456 - MIR SINE MIR -62 146 7 282 29 0 0 chr3 3455334 3455369 -224069209 + (TG)n Simple_repeat Simple_repeat 2 36 0 1234 235 66 28 chr3 3456114 3456337 -224068241 + MER39 LTR ERV1 300 544 -163 2282 35 45 3 chr3 3456337 3456627 -224067951 + AluY SINE Alu 1 302 -9 1234 235 66 28 chr3 3456627 3456765 -224067813 + MER39 LTR ERV1 544 675 -32 1310 177 170 0 chr3 3456796 3457090 -224067488 - MER2 DNA MER2_type 0 344 1 321 279 137 0 chr3 3457092 3457275 -224067303 + MER113 DNA MER1_type? 6 213 -308 227 280 13 30 chr3 3457848 3457933 -224066645 + MIR SINE MIR 85 145 -63 283 284 0 12 chr3 3457954 3458035 -224066543 - MIR SINE MIR -21 241 162 2355 211 78 47 chr3 3458057 3458777 -224065801 - MER21B LTR ERV1 -30 833 1 410 269 119 15 chr3 3458794 3458928 -224065650 - MIR SINE MIR -114 148 1 497 218 1 48 chr3 3459593 3459724 -224064854 - MER20 DNA MER1_type -64 155 32 2027 155 21 15 chr3 3459762 3460097 -224064481 + LTR32 LTR ERVL 15 351 -120 859 191 30 6 chr3 3460129 3460297 -224064281 + LTR32 LTR ERVL 300 471 0 2092 36 0 33 chr3 3460817 3461091 -224063487 + L1PA3 LINE L1 5888 6152 -3 412 336 80 29 chr3 3462302 3462374 -224062204 - MIR SINE MIR 0 262 195 2045 130 0 3 chr3 3462374 3462659 -224061919 - AluSx SINE Alu -28 284 1 412 336 80 29 chr3 3462659 3462824 -224061754 - MIR SINE MIR -67 195 13 296 283 107 6 chr3 3463514 3463673 -224060905 - MIR SINE MIR -1 261 87 263 280 32 21 chr3 3464110 3464203 -224060375 - L2 LINE L2 0 3272 3179 388 354 32 6 chr3 3465702 3465860 -224058718 - MIR SINE MIR -86 176 15 1428 216 71 31 chr3 3467958 3468407 -224056171 - MLT1C LTR MaLR 0 467 1 1036 200 16 5 chr3 3468688 3468878 -224055700 + AluJb SINE Alu 89 280 -32 234 0 0 0 chr3 3468886 3468912 -224055666 + (TA)n Simple_repeat Simple_repeat 1 26 0 * 270 0 0 0 chr3 3468911 3468941 -224055637 + (GA)n Simple_repeat Simple_repeat 2 31 0 426 217 167 0 chr3 3469011 3469131 -224055447 - MLT1H LTR MaLR -5 544 405 312 310 44 0 chr3 3469555 3469668 -224054910 + L2 LINE L2 3154 3271 -1 420 269 88 18 chr3 3469956 3470127 -224054451 + Charlie8 DNA MER1_type 74 256 -2161 206 209 90 45 chr3 3470374 3470441 -224054137 + MIR SINE MIR 105 174 -88 1669 171 32 20 chr3 3470581 3470679 -224053899 + L1MB7 LINE L1 5822 5917 -267 2447 108 19 8 chr3 3470679 3471050 -224053528 + THE1C LTR MaLR 1 375 0 1669 171 32 20 chr3 3471050 3471295 -224053283 + L1MB7 LINE L1 5917 6169 -15 3618 124 60 28 chr3 3471341 3471955 -224052623 + MER51A LTR ERV1 1 634 0 2114 183 47 10 chr3 3471974 3472379 -224052199 - MSTB LTR MaLR -6 420 1 2117 120 0 13 chr3 3472479 3472778 -224051800 - AluSg SINE Alu -15 295 1 229 380 71 5 chr3 3473741 3473925 -224050653 - L2 LINE L2 0 3313 3118 21 0 0 0 chr3 3474580 3474601 -224049977 + AT_rich Low_complexity Low_complexity 1 21 0 340 322 50 26 chr3 3474677 3475171 -224049407 - L1MEc LINE L1 -868 1708 1284 870 231 126 40 chr3 3475313 3475611 -224048967 - MLT1I LTR MaLR 0 409 71 2266 104 7 0 chr3 3475611 3475910 -224048668 - AluSx SINE Alu -11 301 1 870 231 126 40 chr3 3475910 3475984 -224048594 - MLT1I LTR MaLR -338 71 5 309 307 12 37 chr3 3476188 3476351 -224048227 - L1MEc LINE L1 -5359 846 688 415 333 64 64 chr3 3476560 3476905 -224047673 - L1MEc LINE L1 -5771 434 90 311 360 27 0 chr3 3477033 3477144 -224047434 + MIR3 SINE MIR 48 161 -47 187 269 115 0 chr3 3478451 3478529 -224046049 - L2 LINE L2 -2489 825 739 267 233 60 69 chr3 3479444 3479560 -224045018 - MIR3 SINE MIR -11 197 83 916 179 25 0 chr3 3479790 3479952 -224044626 - Tigger7 DNA MER2_type -567 166 1 1540 137 92 30 chr3 3479954 3480289 -224044289 + L1MA7 LINE L1 5926 6281 -10 814 108 0 0 chr3 3480309 3480420 -224044158 + AluY SINE Alu 1 111 -200 4175 168 105 54 chr3 3480420 3481589 -224042989 + pTR5 LTR ERV1 743 2027 -411 280 274 11 0 chr3 3481592 3481687 -224042891 + LTR30 LTR ERV1 548 643 -79 1242 90 50 20 chr3 3481708 3481908 -224042670 + LTR12 LTR ERV1 486 691 -23 1543 62 0 19 chr3 3481915 3482126 -224042452 + AluY SINE Alu 102 308 -3 352 309 73 57 chr3 3482176 3482422 -224042156 - MIR SINE MIR -11 251 2 2116 116 0 0 chr3 3482449 3482742 -224041836 + AluSq SINE Alu 1 293 -20 206 373 0 27 chr3 3483454 3483529 -224041049 - MIR SINE MIR -109 99 27 229 188 59 71 chr3 3483592 3483677 -224040901 - LTR67 LTR ERVL -15 542 459 4370 105 14 0 chr3 3484331 3484957 -224039621 - MER41B LTR ERV1 0 635 1 407 279 162 13 chr3 3485239 3485393 -224039185 - MER5A DNA MER1_type 0 189 13 278 320 47 16 chr3 3485451 3485579 -224038999 - MIR3 SINE MIR -40 168 37 432 264 97 7 chr3 3486438 3486593 -224037985 + MIR SINE MIR 84 252 -10 2246 96 0 0 chr3 3487738 3488039 -224036539 - AluY SINE Alu -10 301 1 2369 116 11 21 chr3 3488706 3489085 -224035493 - THE1C LTR MaLR 0 375 1 1075 200 23 5 chr3 3489492 3489707 -224034871 + MER20 DNA MER1_type 1 219 0 31 26 0 0 chr3 3489864 3489902 -224034676 + AT_rich Low_complexity Low_complexity 1 38 0 294 284 167 59 chr3 3490001 3490423 -224034155 - L2 LINE L2 -52 3220 2764 204 318 85 64 chr3 3491458 3491678 -224032900 - MIR SINE MIR -6 256 17 239 304 173 52 chr3 3491690 3491881 -224032697 - MIR SINE MIR -48 214 1 244 325 0 24 chr3 3491908 3491991 -224032587 - L3b LINE CR1 -253 1330 1250 24 0 0 0 chr3 3493918 3493942 -224030636 + AT_rich Low_complexity Low_complexity 1 24 0 2419 75 0 0 chr3 3494646 3494964 -224029614 + AluY SINE Alu 1 318 0 1350 149 164 11 chr3 3495722 3495984 -224028594 - AluSq SINE Alu 0 303 2 2543 46 3 3 chr3 3496227 3496531 -224028047 - AluY SINE Alu -7 304 1 2174 94 3 3 chr3 3497135 3497422 -224027156 - AluSg SINE Alu -23 287 1 466 303 141 29 chr3 3499523 3499800 -224024778 + L2 LINE L2 3003 3310 -3 1967 138 14 0 chr3 3500964 3501247 -224023331 + AluSx SINE Alu 1 287 -25 206 349 0 64 chr3 3504597 3504706 -224019872 - L2 LINE L2 -173 3099 2998 2471 79 0 0 chr3 3505071 3505375 -224019203 + AluSc SINE Alu 1 304 -5 1464 131 36 0 chr3 3505862 3506084 -224018494 - MER30 DNA MER1_type 0 230 1 393 323 31 26 chr3 3506527 3506722 -224017856 - MLT1J1 LTR MaLR -249 197 2 183 250 89 0 chr3 3506738 3506794 -224017784 - L2 LINE L2 -5 3308 3248 204 198 20 40 chr3 3507380 3507481 -224017097 + T-rich Low_complexity Low_complexity 2 100 0 246 279 18 81 chr3 3507580 3507691 -224016887 + MIR SINE MIR 49 152 -56 369 302 6 52 chr3 3507829 3507968 -224016610 + MIR SINE MIR 32 163 -99 2303 96 0 7 chr3 3507968 3508271 -224016307 + AluSp SINE Alu 1 301 -12 369 302 6 52 chr3 3508271 3508303 -224016275 + MIR SINE MIR 163 195 -67 2437 74 0 3 chr3 3509192 3509502 -224015076 - AluY SINE Alu -2 309 1 221 269 216 15 chr3 3509658 3509792 -224014786 + MIR SINE MIR 74 234 -28 28 71 0 0 chr3 3509943 3509999 -224014579 + AT_rich Low_complexity Low_complexity 1 56 0 24 0 0 0 chr3 3510116 3510140 -224014438 + AT_rich Low_complexity Low_complexity 1 24 0 2260 60 46 0 chr3 3510370 3510653 -224013925 - AluSg SINE Alu -14 296 1 2411 70 0 3 chr3 3510992 3511290 -224013288 + AluSq SINE Alu 1 297 -16 314 379 0 0 chr3 3511423 3511526 -224013052 - L3 LINE CR1 -40 1537 1435 213 205 0 0 chr3 3511531 3511570 -224013008 + (ATG)n Simple_repeat Simple_repeat 1 39 0 579 275 71 6 chr3 3511609 3511791 -224012787 - MIR SINE MIR -63 199 6 492 149 45 22 chr3 3511811 3512040 -224012538 + CT-rich Low_complexity Low_complexity 1 234 0 259 192 58 0 chr3 3512094 3512146 -224012432 - Tigger5 DNA MER2_type -2268 55 1 296 305 34 17 chr3 3512271 3512389 -224012189 + MIR SINE MIR 142 261 -1 294 29 0 0 chr3 3512954 3512989 -224011589 + (TG)n Simple_repeat Simple_repeat 2 36 0 202 50 0 100 chr3 3513434 3513474 -224011104 + (TTTTTA)n Simple_repeat Simple_repeat 1 36 0 236 293 38 57 chr3 3513574 3513647 -224010931 + L2 LINE L2 3169 3241 -31 1652 207 81 29 chr3 3513647 3514091 -224010487 - MLT1C LTR MaLR 0 467 1 236 293 38 57 chr3 3514091 3514123 -224010455 + L2 LINE L2 3241 3272 0 1847 164 0 0 chr3 3516762 3517070 -224007508 + AluSx SINE Alu 1 308 0 2361 75 0 10 chr3 3517075 3517370 -224007208 + AluSx SINE Alu 1 292 -20 206 300 135 38 chr3 3517531 3517768 -224006810 + L2 LINE L2 2933 3192 -121 260 351 0 0 chr3 3517811 3517888 -224006690 + L2 LINE L2 3180 3256 -57 2035 211 130 12 chr3 3517888 3518415 -224006163 + L1MC4 LINE L1 7306 7926 -116 324 0 0 0 chr3 3518415 3518451 -224006127 + (TG)n Simple_repeat Simple_repeat 2 37 0 2035 211 130 12 chr3 3518451 3518577 -224006001 + L1MC4 LINE L1 7926 8036 -6 1236 159 68 0 chr3 3520711 3520962 -224003616 - L1MA6 LINE L1 0 6300 6033 421 143 0 0 chr3 3520998 3521061 -224003517 - MLT1C LTR MaLR -2 465 403 258 136 0 0 chr3 3521061 3521105 -224003473 - L1MA6 LINE L1 -224 6076 6033 1938 196 58 18 chr3 3521138 3521587 -224002991 - MLT1C LTR MaLR 0 467 1 280 109 0 0 chr3 3522152 3522198 -224002380 + MADE1 DNA Mariner 1 46 -34 1789 271 86 31 chr3 3522651 3522984 -224001594 + L1ME2 LINE L1 5372 5685 -479 2123 129 7 0 chr3 3522984 3523286 -224001292 - AluSx SINE Alu -8 304 1 1789 271 86 31 chr3 3523286 3523639 -224000939 + L1ME2 LINE L1 5685 6104 -60 2038 153 25 11 chr3 3523639 3524005 -224000573 - L1PA16 LINE L1 -4 6162 5792 1789 271 86 31 chr3 3524005 3524060 -224000518 + L1ME2 LINE L1 6104 6155 -9 1413 203 53 4 chr3 3524243 3524524 -224000054 - AluJb SINE Alu -17 295 1 206 108 54 0 chr3 3527591 3527628 -223996950 + T-rich Low_complexity Low_complexity 6 44 0 554 280 52 28 chr3 3527665 3527876 -223996702 + MIR SINE MIR 34 249 -13 266 209 0 77 chr3 3528492 3528583 -223995995 + L1MC4 LINE L1 6612 6695 -1347 393 22 0 0 chr3 3528604 3528650 -223995928 + (TA)n Simple_repeat Simple_repeat 2 47 0 22 0 0 0 chr3 3528882 3528904 -223995674 + AT_rich Low_complexity Low_complexity 1 22 0 25 51 0 0 chr3 3529043 3529082 -223995496 + AT_rich Low_complexity Low_complexity 1 39 0 294 305 169 0 chr3 3529413 3529531 -223995047 - MIR3 SINE MIR -39 169 32 1307 167 25 21 chr3 3530615 3530897 -223993681 - L1MA4 LINE L1 -9 6291 6009 2272 147 78 40 chr3 3531118 3531568 -223993010 - MLT1C LTR MaLR 0 467 1 239 333 45 58 chr3 3531935 3532091 -223992487 - MIR3 SINE MIR -95 113 4 1818 220 44 80 chr3 3532329 3532981 -223991597 - MLT1E2 LTR MaLR 0 626 1 2974 218 189 21 chr3 3533432 3533786 -223990792 + L1MC4a LINE L1 6610 6903 -905 447 19 0 0 chr3 3533786 3533838 -223990740 + (TAGA)n Simple_repeat Simple_repeat 4 55 0 2974 218 189 21 chr3 3533838 3533940 -223990638 + L1MC4a LINE L1 6903 6987 -821 1735 190 0 28 chr3 3533940 3534261 -223990317 + AluJb SINE Alu 1 312 0 2974 218 189 21 chr3 3534261 3534820 -223989758 + L1MC4a LINE L1 6987 7797 -11 224 323 56 10 chr3 3534821 3534919 -223989659 + MIR SINE MIR 53 142 -66 223 363 105 0 chr3 3534957 3535081 -223989497 + MIR SINE MIR 1 137 -125 317 298 44 9 chr3 3536989 3537103 -223987475 - MIR3 SINE MIR -10 198 81 2359 94 0 0 chr3 3537439 3537746 -223986832 - AluY SINE Alu -4 307 1 244 226 32 11 chr3 3537977 3538070 -223986508 + (TA)n Simple_repeat Simple_repeat 2 96 0 1503 114 55 4 chr3 3539301 3539538 -223985040 + L1PA10 LINE L1 5914 6162 -6 205 51 51 0 chr3 3539827 3539866 -223984712 + (CCTG)n Simple_repeat Simple_repeat 4 44 0 1447 244 29 12 chr3 3540021 3540431 -223984147 - L1ME3 LINE L1 -1 6161 5745 2246 94 0 3 chr3 3540454 3540752 -223983826 - AluSq SINE Alu -16 297 1 515 323 106 0 chr3 3540964 3541199 -223983379 + MIR SINE MIR 3 262 0 2307 92 10 0 chr3 3541746 3542040 -223982538 - AluSx SINE Alu -15 297 1 24 32 0 0 chr3 3542044 3542075 -223982503 + AT_rich Low_complexity Low_complexity 1 31 0 240 285 46 15 chr3 3542945 3543075 -223981503 + L1P LINE L1 3604 3737 -2409 273 295 21 11 chr3 3544505 3544600 -223979978 + MIR SINE MIR 73 168 -94 186 318 45 0 chr3 3544649 3544715 -223979863 - MIR3 SINE MIR -51 157 89 2292 75 0 3 chr3 3544859 3545153 -223979425 - AluY SINE Alu -18 293 1 4477 123 13 20 chr3 3545781 3546526 -223978052 + L1MC1 LINE L1 5594 6333 0 191 383 66 48 chr3 3547226 3547453 -223977125 + L3 LINE CR1 1303 1533 -44 693 317 97 38 chr3 3548300 3548633 -223975945 + LTR16C LTR ERVL 1 368 -123 1932 148 13 0 chr3 3548633 3548931 -223975647 - AluSx SINE Alu -10 302 1 693 317 97 38 chr3 3548931 3549042 -223975536 + LTR16C LTR ERVL 368 471 -20 2136 128 3 0 chr3 3549447 3549751 -223974827 - AluSx SINE Alu -7 305 1 357 279 105 12 chr3 3549949 3550121 -223974457 - MIR SINE MIR -16 246 59 315 170 0 0 chr3 3552090 3552143 -223972435 + L1PA5 LINE L1 5951 6003 -151 40641 68 3 6 chr3 3552718 3558795 -223965783 - L1PA5 LINE L1 -2 6152 86 2451 62 3 3 chr3 3558795 3559100 -223965478 + AluY SINE Alu 1 305 -6 40641 68 3 6 chr3 3559100 3559185 -223965393 - L1PA5 LINE L1 -6068 86 2 225 0 0 0 chr3 3559270 3559295 -223965283 + (A)n Simple_repeat Simple_repeat 1 25 0 318 327 39 20 chr3 3559711 3559975 -223964603 + L1MC4a LINE L1 5637 5822 -299 347 297 0 9 chr3 3560245 3560356 -223964222 - L2 LINE L2 0 3272 3163 364 284 220 15 chr3 3560920 3561188 -223963390 - L2 LINE L2 0 3313 2991 244 175 0 53 chr3 3561190 3561247 -223963331 - L1M2 LINE L1 -455 5836 5783 413 187 0 11 chr3 3561247 3561338 -223963240 + (TG)n Simple_repeat Simple_repeat 2 91 0 2520 165 40 30 chr3 3561339 3561473 -223963105 - L1M2 LINE L1 -519 5793 5662 1367 184 79 11 chr3 3561473 3561632 -223962946 - AluJb SINE Alu -14 298 151 246 32 0 0 chr3 3561632 3561663 -223962915 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 1367 184 79 11 chr3 3561663 3561781 -223962797 - AluJb SINE Alu -161 151 2 2520 165 40 30 chr3 3561781 3562521 -223962057 - L1M2 LINE L1 -650 5662 4915 2509 152 24 15 chr3 3562521 3562961 -223961617 + L1MA7 LINE L1 5828 6291 0 199 303 45 34 chr3 3563039 3563128 -223961450 - L2 LINE L2 -315 2957 2868 1812 152 27 3 chr3 3563870 3564166 -223960412 + MER2 DNA MER2_type 1 303 -42 507 231 13 45 chr3 3564219 3564375 -223960203 - MER105 DNA DNA 0 204 54 180 154 26 26 chr3 3564662 3564701 -223959877 + L2 LINE L2 3229 3267 -5 246 105 0 0 chr3 3564702 3564740 -223959838 + (AATTG)n Simple_repeat Simple_repeat 1 38 0 275 204 46 102 chr3 3564815 3564923 -223959655 - L2 LINE L2 -2 3311 3210 305 176 28 28 chr3 3565429 3565537 -223959041 + (TA)n Simple_repeat Simple_repeat 2 109 0 1985 128 0 7 chr3 3566898 3567186 -223957392 + AluSx SINE Alu 1 286 -26 189 171 0 0 chr3 3567209 3567244 -223957334 + (TTTA)n Simple_repeat Simple_repeat 2 36 0 279 229 42 31 chr3 3567585 3567681 -223956897 + MER94 DNA DNA 37 133 -1 851 203 45 17 chr3 3567849 3568026 -223956552 + MER5A DNA MER1_type 8 189 0 198 171 0 0 chr3 3568281 3568322 -223956256 + (TG)n Simple_repeat Simple_repeat 2 42 0 544 13 0 64 chr3 3568798 3568876 -223955702 - L1PA3 LINE L1 0 6155 6083 381 80 0 2 chr3 3568877 3568933 -223955645 + L1PA5 LINE L1 5851 5899 -255 230 243 0 0 chr3 3569325 3569395 -223955183 + L1MC3 LINE L1 6579 6648 -1137 306 211 22 44 chr3 3569433 3569523 -223955055 - L1MC4 LINE L1 -1339 6703 6616 409 216 14 0 chr3 3569528 3569667 -223954911 + (TA)n Simple_repeat Simple_repeat 2 142 0 1133 109 0 0 chr3 3571647 3571812 -223952766 + L1PA14 LINE L1 5997 6161 0 800 311 108 28 chr3 3572762 3573300 -223951278 - L2 LINE L2 -5 3308 2734 279 0 0 0 chr3 3573383 3573414 -223951164 + (GCTG)n Simple_repeat Simple_repeat 4 34 0 255 31 0 0 chr3 3573664 3573696 -223950882 + (TCTA)n Simple_repeat Simple_repeat 2 33 0 23 0 0 0 chr3 3574305 3574328 -223950250 + AT_rich Low_complexity Low_complexity 1 23 0 235 329 75 41 chr3 3574548 3574694 -223949884 + L2 LINE L2 3121 3271 -1 21 0 0 0 chr3 3576132 3576153 -223948425 + AT_rich Low_complexity Low_complexity 1 21 0 249 279 44 6 chr3 3576247 3576405 -223948173 + (TA)n Simple_repeat Simple_repeat 1 164 0 592 349 4 24 chr3 3576427 3576679 -223947899 - MIR SINE MIR -13 249 3 856 138 0 103 chr3 3577898 3577984 -223946594 - L1M3 LINE L1 -572 5762 5701 2313 106 0 0 chr3 3577984 3578286 -223946292 + AluSx SINE Alu 1 302 -10 856 138 0 103 chr3 3578286 3578373 -223946205 - L1M3 LINE L1 -633 5701 5607 2041 169 8 0 chr3 3578375 3578736 -223945842 + L1MB1 LINE L1 5773 6136 -53 1896 158 3 3 chr3 3578736 3579058 -223945520 + AluJb SINE Alu 1 312 0 27 29 0 0 chr3 3580224 3580258 -223944320 + AT_rich Low_complexity Low_complexity 1 34 0 373 347 64 6 chr3 3580783 3580956 -223943622 + MIR3 SINE MIR 15 197 -11 226 341 0 22 chr3 3582169 3582260 -223942318 - MIR SINE MIR -119 143 55 375 330 82 16 chr3 3582637 3582819 -223941759 - MIR SINE MIR -46 216 23 375 330 82 16 chr3 3582910 3583092 -223941486 - MIR SINE MIR -46 216 23 375 330 82 16 chr3 3583183 3583365 -223941213 - MIR SINE MIR -46 216 23 330 346 90 14 chr3 3584616 3584827 -223939751 - MIR SINE MIR -16 246 20 184 217 0 43 chr3 3584847 3584893 -223939685 + L3 LINE CR1 1405 1448 -129 2741 184 4 13 chr3 3585004 3585527 -223939051 - L1MB5 LINE L1 -8 6166 5649 648 269 122 5 chr3 3585544 3585741 -223938837 - MIR SINE MIR -22 240 21 614 274 38 28 chr3 3586304 3586516 -223938062 - L3 LINE CR1 -655 922 709 435 323 15 26 chr3 3588506 3588701 -223935877 - MER117 DNA MER1_type 0 197 5 270 320 104 8 chr3 3589463 3589588 -223934990 - L2 LINE L2 -6 3307 3171 204 24 48 48 chr3 3589978 3590020 -223934558 + (TTAA)n Simple_repeat Simple_repeat 4 45 0 430 364 16 5 chr3 3590032 3590219 -223934359 - MIR SINE MIR -65 197 9 234 298 64 11 chr3 3590239 3590333 -223934245 - MIR3 SINE MIR -47 161 63 610 253 118 27 chr3 3590356 3590577 -223934001 - MIR SINE MIR 0 262 22 785 222 12 18 chr3 3590618 3590789 -223933789 + MER20 DNA MER1_type 31 200 -19 617 182 45 0 chr3 3591517 3591649 -223932929 - MER33 DNA MER1_type -131 193 56 2189 112 7 0 chr3 3592129 3592433 -223932145 + AluSq SINE Alu 1 306 -7 273 289 50 63 chr3 3593217 3593376 -223931202 - MER5A DNA MER1_type -3 186 30 766 138 86 0 chr3 3593636 3593788 -223930790 + L1MB4 LINE L1 6011 6175 -5 2261 93 3 13 chr3 3594048 3594361 -223930217 + AluSx SINE Alu 3 312 0 303 93 0 0 chr3 3595594 3595637 -223928941 + (TTTC)n Simple_repeat Simple_repeat 2 44 0 374 311 123 34 chr3 3596102 3596337 -223928241 + MIR SINE MIR 7 262 0 279 322 98 9 chr3 3596533 3596714 -223927864 - MIR3 SINE MIR -60 202 4 387 283 78 95 chr3 3597284 3597694 -223926884 - MLT1L LTR MaLR -93 522 120 2035 114 3 36 chr3 3598718 3599026 -223925552 - AluY SINE Alu -13 298 1 224 344 32 71 chr3 3599492 3599646 -223924932 - L2 LINE L2 -6 3266 3119 227 67 7 5 chr3 3600688 3600823 -223923755 + AluSg/x SINE Alu 102 301 -2 180 0 0 0 chr3 3600871 3600891 -223923687 + (TTG)n Simple_repeat Simple_repeat 2 21 0 1784 166 7 0 chr3 3600901 3601190 -223923388 - AluSx SINE Alu -21 291 1 2317 100 10 0 chr3 3601603 3601904 -223922674 + AluSq SINE Alu 1 304 -9 187 329 25 0 chr3 3601907 3601986 -223922592 + L2 LINE L2 2590 2670 -644 791 229 0 61 chr3 3602090 3602304 -223922274 - MER3 DNA MER1_type -8 201 1 2255 94 3 7 chr3 3602382 3602680 -223921898 + AluSp SINE Alu 1 297 -16 181 341 24 24 chr3 3602932 3603017 -223921561 + L2 LINE L2 3188 3272 0 285 296 28 28 chr3 3603517 3603659 -223920919 - L1ME LINE L1 -298 5823 5682 378 224 224 0 chr3 3604418 3604525 -223920053 - MIR SINE MIR -128 134 4 274 331 103 14 chr3 3604696 3604841 -223919737 + L3 LINE CR1 324 481 -1096 1272 236 59 13 chr3 3605108 3605481 -223919097 + L1MB7 LINE L1 5779 6168 -16 634 266 108 9 chr3 3605557 3605779 -223918799 + L3 LINE CR1 589 832 -745 24 32 0 0 chr3 3606004 3606035 -223918543 + AT_rich Low_complexity Low_complexity 1 31 0 442 325 104 0 chr3 3606048 3606260 -223918318 - MIR SINE MIR -24 238 5 3545 94 0 0 chr3 3607069 3607550 -223917028 - L1PA11 LINE L1 0 6174 5694 28 48 0 0 chr3 3607558 3607600 -223916978 + AT_rich Low_complexity Low_complexity 1 42 0 4910 215 39 34 chr3 3608443 3609653 -223914925 + L1MC/D LINE L1 3659 4878 -1268 2200 113 0 10 chr3 3609653 3610096 -223914482 - AluSx SINE Alu 0 312 1 4910 215 39 34 chr3 3610096 3610283 -223914295 + L1MC/D LINE L1 4878 5063 -1083 1884 128 68 44 chr3 3610284 3610650 -223913928 + THE1C LTR MaLR 1 375 0 9788 123 37 4 chr3 3610650 3612171 -223912407 + THE1C-int LTR MaLR 1 1580 0 2191 123 53 8 chr3 3612171 3612529 -223912049 + THE1C LTR MaLR 1 374 -1 1040 208 42 23 chr3 3612537 3612955 -223911623 + L1MC/D LINE L1 5067 5490 -743 6728 125 135 91 chr3 3613385 3615011 -223909567 + pTR5 LTR ERV1 741 2437 -1 185 0 40 0 chr3 3616281 3616306 -223908272 + (TTTTG)n Simple_repeat Simple_repeat 5 30 0 2414 143 44 1 chr3 3616889 3617402 -223907176 + MER6A DNA MER2_type 1 605 0 180 200 0 0 chr3 3618434 3618474 -223906104 + CT-rich Low_complexity Low_complexity 1 40 0 201 283 17 33 chr3 3620798 3620858 -223903720 + L2 LINE L2 3206 3264 -8 1045 261 48 85 chr3 3622261 3622744 -223901834 + MLT1J LTR MaLR 3 467 -44 4545 133 41 13 chr3 3622768 3623517 -223901061 - MER4D LTR ERV1 0 903 134 2274 107 6 21 chr3 3624148 3624486 -223900092 + MER1B DNA MER1_type 5 337 0 1449 206 127 2 chr3 3625440 3625825 -223898753 - MLT2B2 LTR ERVL -7 508 2 748 203 7 0 chr3 3626937 3627080 -223897498 - L1MC/D LINE L1 -602 5640 5497 1813 149 0 32 chr3 3627097 3627429 -223897149 - AluJb SINE Alu 0 312 9 1071 194 60 39 chr3 3627429 3627453 -223897125 - L1MC/D LINE L1 -1013 5133 5111 2250 110 3 0 chr3 3627453 3627744 -223896834 - AluSx SINE Alu -20 292 1 1071 194 60 39 chr3 3627744 3628002 -223896576 - L1MC/D LINE L1 -1035 5111 4845 598 182 16 107 chr3 3627996 3628183 -223896395 + L1MB7 LINE L1 6010 6179 -5 * 1330 268 26 17 chr3 3628207 3628741 -223895837 - L1MC/D LINE L1 -1310 4836 4298 248 272 35 46 chr3 3629072 3629245 -223895333 - HAL1 LINE L1 -913 1594 1424 512 269 8 35 chr3 3629414 3629598 -223894980 - L1ME2 LINE L1 0 6166 5984 1651 206 72 60 chr3 3630003 3630436 -223894142 - MLT1D LTR MaLR 0 505 68 1800 153 0 15 chr3 3630448 3630801 -223893777 + Tigger4(Zombi) DNA MER2_type 34 2727 -4 331 162 59 15 chr3 3630800 3630868 -223893710 - MLT1D LTR MaLR -428 77 7 * 291 227 76 0 chr3 3631073 3631139 -223893439 + MER91C DNA MER1_type 36 106 -34 338 303 46 28 chr3 3631367 3631476 -223893102 - MIR SINE MIR -61 147 37 298 338 127 19 chr3 3631635 3631792 -223892786 - L2 LINE L2 0 3272 3099 1023 211 79 4 chr3 3632086 3632314 -223892264 - MIR SINE MIR -1 261 17 205 277 27 74 chr3 3632509 3632657 -223891921 - L2 LINE L2 -509 2805 2665 1034 245 112 99 chr3 3633196 3634044 -223890534 + L1MC4 LINE L1 7178 8036 -6 258 81 0 0 chr3 3635182 3635219 -223889359 + L2 LINE L2 3276 3312 -1 477 151 264 0 chr3 3635881 3635987 -223888591 - MER20 DNA MER1_type -24 195 62 2164 94 0 63 chr3 3636089 3636420 -223888158 + AluSg SINE Alu 1 310 0 311 254 35 122 chr3 3638920 3639117 -223885461 - MIR3 SINE MIR -13 195 16 229 315 22 11 chr3 3639298 3639390 -223885188 - MER102b DNA MER1_type -15 326 234 796 171 0 0 chr3 3643012 3643141 -223881437 + FLAM_A SINE Alu 1 129 -4 244 287 161 0 chr3 3643295 3643382 -223881196 + MIR3 SINE MIR 81 181 -27 180 164 66 0 chr3 3643512 3643573 -223881005 + CT-rich Low_complexity Low_complexity 1 65 0 222 193 23 23 chr3 3643589 3643677 -223880901 + CT-rich Low_complexity Low_complexity 6 93 0 200 276 0 0 chr3 3645572 3645630 -223878948 + GA-rich Low_complexity Low_complexity 3 60 0 180 0 0 0 chr3 3646871 3646891 -223877687 + (TG)n Simple_repeat Simple_repeat 1 20 0 1564 250 101 2 chr3 3647466 3647894 -223876684 - MER34 LTR ERV1 -47 495 26 237 258 103 52 chr3 3648234 3648389 -223876189 - MER102a DNA MER1_type -15 315 153 2092 141 3 3 chr3 3648916 3649229 -223875349 - AluSq SINE Alu 0 313 1 260 287 13 102 chr3 3649519 3649676 -223874902 - L2 LINE L2 0 3313 3171 378 0 0 0 chr3 3650805 3650847 -223873731 + (TG)n Simple_repeat Simple_repeat 1 42 0 364 280 40 0 chr3 3651325 3651425 -223873153 - MER5A DNA MER1_type -77 112 9 2192 197 83 10 chr3 3652647 3653155 -223871423 - L1MB8 LINE L1 -15 6163 5619 183 404 57 7 chr3 3655589 3655730 -223868848 + MIR3 SINE MIR 45 192 -16 300 111 0 0 chr3 3656065 3656110 -223868468 + (CTG)n Simple_repeat Simple_repeat 3 47 0 3582 163 16 5 chr3 3657476 3658146 -223866432 - L1MA5 LINE L1 -5 6295 5618 273 57 0 0 chr3 3658430 3658465 -223866113 + (GGA)n Simple_repeat Simple_repeat 2 36 0 2300 96 0 3 chr3 3658962 3659263 -223865315 - AluSc SINE Alu -9 300 1 891 200 0 11 chr3 3660905 3661080 -223863498 - AluJb SINE Alu -9 303 131 208 404 9 9 chr3 3661661 3661770 -223862808 + MIR SINE MIR 38 146 -116 6900 43 36 2 chr3 3661789 3663114 -223861464 - L1PA5 LINE L1 0 6154 4786 219 139 0 0 chr3 3663475 3663511 -223861067 + (CTG)n Simple_repeat Simple_repeat 3 38 0 743 168 0 0 chr3 3665243 3665368 -223859210 - FLAM_C SINE Alu -7 136 12 320 330 48 37 chr3 3665491 3665679 -223858899 + MIR SINE MIR 4 193 -69 225 244 0 0 chr3 3666396 3666441 -223858137 + (TCCA)n Simple_repeat Simple_repeat 3 47 0 1800 188 106 33 chr3 3666588 3667013 -223857565 + MLT1C LTR MaLR 4 459 -8 325 307 62 36 chr3 3667525 3667717 -223856861 - L1ME4a LINE L1 -223 5898 5702 243 0 0 0 chr3 3668725 3668752 -223855826 + (TG)n Simple_repeat Simple_repeat 2 28 0 209 280 14 140 chr3 3673076 3673219 -223851359 - L2 LINE L2 -10 3303 3179 4438 276 52 9 chr3 3673227 3674454 -223850124 - L1P LINE L1 -2695 3451 2172 4938 115 40 24 chr3 3674456 3675280 -223849298 + L1PA15 LINE L1 5329 6165 0 186 338 65 57 chr3 3675711 3675837 -223848741 - L2 LINE L2 -839 2475 2351 1802 165 3 7 chr3 3675837 3676171 -223848407 - AluSq SINE Alu 0 333 1 186 338 65 57 chr3 3676171 3676306 -223848272 - L2 LINE L2 -963 2351 2211 15424 95 3 22 chr3 3676568 3678900 -223845678 - L1PA7 LINE L1 -803 5343 3057 6599 50 0 2 chr3 3678900 3679718 -223844860 + L1PA7 LINE L1 5336 6151 -3 216 259 183 46 chr3 3681503 3681634 -223842944 + MIR3 SINE MIR 2 150 -58 665 241 26 101 chr3 3683170 3683398 -223841180 - MER58A DNA MER1_type -3 221 11 328 237 79 66 chr3 3683518 3683670 -223840908 - MER103 DNA DNA -12 154 1 225 215 101 0 chr3 3685232 3685311 -223839267 - L1MC4 LINE L1 -1339 6703 6617 2351 56 0 75 chr3 3686052 3686374 -223838204 + AluY SINE Alu 1 298 -13 1675 276 58 9 chr3 3686719 3687266 -223837312 - L1MC4a LINE L1 -2 7806 7233 353 293 64 0 chr3 3688040 3688180 -223836398 + MIR SINE MIR 100 248 -14 333 239 110 28 chr3 3688475 3688584 -223835994 + L2 LINE L2 3193 3310 -3 1987 164 0 6 chr3 3688737 3689048 -223835530 - AluJb SINE Alu -3 309 1 333 275 181 29 chr3 3689133 3689304 -223835274 - MIR SINE MIR -49 213 17 258 159 87 58 chr3 3689350 3689419 -223835159 + L2 LINE L2 3177 3247 -66 556 281 94 0 chr3 3690231 3690402 -223834176 - MIR SINE MIR -57 205 19 402 286 66 28 chr3 3690409 3690591 -223833987 + MER117 DNA MER1_type 2 190 -7 3735 143 22 14 chr3 3690838 3691320 -223833258 - L1PA16 LINE L1 -11 6155 5665 1769 181 0 13 chr3 3691320 3691634 -223832944 - AluJo SINE Alu -2 310 1 3735 143 22 14 chr3 3691634 3691782 -223832796 - L1PA16 LINE L1 -501 5665 5520 265 274 11 32 chr3 3691783 3691878 -223832700 + L1MB8 LINE L1 6028 6120 -58 194 350 100 0 chr3 3691970 3692090 -223832488 + MIR SINE MIR 131 262 0 237 304 88 0 chr3 3692384 3692565 -223832013 + HAL1 LINE L1 1918 2114 -393 234 198 111 0 chr3 3692665 3692746 -223831832 + HAL1 LINE L1 2244 2333 -174 270 313 240 7 chr3 3693140 3693290 -223831288 - MIR3 SINE MIR -3 205 21 356 354 18 18 chr3 3694868 3695030 -223829548 + MIR SINE MIR 32 192 -70 250 337 99 35 chr3 3695288 3695460 -223829118 - MIR SINE MIR -78 184 2 2249 99 3 7 chr3 3695688 3695992 -223828586 - AluY SINE Alu -8 303 1 214 295 67 19 chr3 3696131 3696236 -223828342 - MIR SINE MIR -23 239 130 326 269 42 152 chr3 3696393 3696702 -223827876 + L2 LINE L2 2994 3268 -4 207 0 0 0 chr3 3696924 3696947 -223827631 + (A)n Simple_repeat Simple_repeat 1 23 0 511 63 0 13 chr3 3698054 3698133 -223826445 + L1MA7 LINE L1 6212 6289 -2 261 333 13 0 chr3 3698284 3698359 -223826219 - MIR SINE MIR -97 111 36 230 347 51 10 chr3 3698525 3698623 -223825955 + L2 LINE L2 3144 3245 -27 489 267 48 59 chr3 3698756 3698783 -223825795 + Charlie8 DNA MER1_type 39 65 -1363 1971 143 0 10 chr3 3698783 3699083 -223825495 - AluJo SINE Alu -15 297 1 489 267 48 59 chr3 3699083 3699307 -223825271 + Charlie8 DNA MER1_type 65 1383 -45 2176 123 7 0 chr3 3700712 3701022 -223823556 + AluSx SINE Alu 1 312 0 359 295 27 9 chr3 3701299 3701411 -223823167 - L2 LINE L2 0 3272 3159 481 321 9 71 chr3 3701495 3701719 -223822859 - MIR SINE MIR -7 255 46 2179 118 3 6 chr3 3702541 3702855 -223821723 + AluSp SINE Alu 1 313 0 721 204 5 5 chr3 3703629 3703820 -223820758 + L1MA4 LINE L1 6104 6294 -6 1880 131 7 0 chr3 3703837 3704111 -223820467 + AluSx SINE Alu 1 276 -36 991 293 19 74 chr3 3704143 3704416 -223820162 + L2 LINE L2 2908 3150 -163 2293 86 0 43 chr3 3704416 3704741 -223819837 - AluY SINE Alu 0 311 1 991 293 19 74 chr3 3704741 3704897 -223819681 + L2 LINE L2 3150 3313 0 2146 136 0 0 chr3 3705150 3705452 -223819126 - AluSx SINE Alu -8 304 3 302 263 11 21 chr3 3705739 3705834 -223818744 + LTR16C LTR ERVL 393 486 -5 348 341 103 0 chr3 3706075 3706201 -223818377 + MIR3 SINE MIR 65 203 -5 429 320 92 44 chr3 3708035 3708285 -223816293 + MIR SINE MIR 1 262 0 227 255 0 0 chr3 3708438 3708489 -223816089 + (ATGGTG)n Simple_repeat Simple_repeat 1 51 0 237 65 0 0 chr3 3708640 3708671 -223815907 + (TG)n Simple_repeat Simple_repeat 2 32 0 395 330 139 14 chr3 3709361 3709576 -223815002 - MIR SINE MIR -15 247 6 681 255 34 0 chr3 3709642 3709791 -223814787 + MER5A DNA MER1_type 1 154 -35 251 284 126 11 chr3 3710008 3710103 -223814475 - MIR SINE MIR -96 166 61 2601 167 21 4 chr3 3710295 3710774 -223813804 + L1MB7 LINE L1 5682 6168 -16 214 281 211 47 chr3 3710905 3711033 -223813545 - MIR3 SINE MIR -50 158 10 274 297 117 39 chr3 3711886 3712014 -223812564 - MIR3 SINE MIR -11 197 60 221 297 102 47 chr3 3712332 3712460 -223812118 - L2 LINE L2 -1 3312 3178 254 282 17 60 chr3 3712564 3712681 -223811897 + MIR SINE MIR 4 115 -147 2187 123 23 0 chr3 3713029 3713331 -223811247 + AluSq SINE Alu 2 310 -3 410 132 13 0 chr3 3713475 3713551 -223811027 + (TAGG)n Simple_repeat Simple_repeat 3 79 0 5758 36 1 0 chr3 3713767 3714457 -223810121 + L1PA4 LINE L1 5464 6154 -1 235 279 64 79 chr3 3714624 3714764 -223809814 - MIR SINE MIR -43 219 82 199 0 31 31 chr3 3714865 3714897 -223809681 + (TTG)n Simple_repeat Simple_repeat 2 33 0 2118 108 7 0 chr3 3714903 3715189 -223809389 - AluSq SINE Alu -17 296 9 257 333 24 0 chr3 3716488 3716572 -223808006 + MIR3 SINE MIR 69 154 -54 25 31 0 0 chr3 3716659 3716691 -223807887 + AT_rich Low_complexity Low_complexity 1 32 0 686 251 63 58 chr3 3716712 3716965 -223807613 + MER113 DNA MER1_type? 172 430 -91 2048 124 3 3 chr3 3716965 3717271 -223807307 - AluSg SINE Alu 0 306 1 686 251 63 58 chr3 3717271 3717363 -223807215 + MER113 DNA MER1_type? 430 520 -1 198 0 0 0 chr3 3717392 3717414 -223807164 + (A)n Simple_repeat Simple_repeat 1 22 0 1747 221 86 8 chr3 3718194 3718670 -223805908 - MLT1F1 LTR MaLR -54 513 1 808 323 51 51 chr3 3718680 3718854 -223805724 + L2 LINE L2 2564 2737 -535 1958 111 0 0 chr3 3718854 3719116 -223805462 - AluSx SINE Alu -3 309 48 808 323 51 51 chr3 3719116 3719436 -223805142 + L2 LINE L2 2737 3053 -219 411 236 71 7 chr3 3719483 3719623 -223804955 - L1MA10 LINE L1 -7 6327 6179 282 317 146 0 chr3 3719731 3719854 -223804724 + L2 LINE L2 3132 3272 0 2868 6 0 0 chr3 3719959 3720270 -223804308 - AluYa5 SINE Alu 0 311 1 1675 181 3 13 chr3 3720472 3720787 -223803791 - AluJo SINE Alu 0 312 1 2236 130 16 32 chr3 3721004 3721374 -223803204 + THE1B LTR MaLR 1 364 0 343 271 66 60 chr3 3721926 3722092 -223802486 - MIR SINE MIR -44 218 52 2210 96 10 10 chr3 3723023 3723325 -223801253 - AluSx SINE Alu -10 302 1 195 114 0 0 chr3 3723371 3723406 -223801172 + (TG)n Simple_repeat Simple_repeat 2 36 0 333 295 65 29 chr3 3723652 3723791 -223800787 - L3 LINE CR1 -498 1079 936 469 298 82 33 chr3 3725134 3725379 -223799199 - MIR SINE MIR -4 258 2 21 36 0 0 chr3 3727540 3727568 -223797010 + AT_rich Low_complexity Low_complexity 1 28 0 504 311 13 0 chr3 3727835 3727986 -223796592 - MIR SINE MIR -100 162 10 255 61 0 0 chr3 3728609 3728642 -223795936 + (T)n Simple_repeat Simple_repeat 1 33 0 7166 45 2 8 chr3 3728818 3730356 -223794222 - L1PA5 LINE L1 -8 6146 4610 7339 52 4 0 chr3 3730356 3731321 -223793257 + L1PA5 LINE L1 3647 4615 -1531 578 260 148 51 chr3 3732420 3732793 -223791785 - MLT1I LTR MaLR 0 409 1 572 274 55 20 chr3 3732950 3733151 -223791427 - L2 LINE L2 -1 3312 3105 813 202 0 0 chr3 3733269 3733442 -223791136 - L1MA10 LINE L1 -1 6333 6161 523 195 0 18 chr3 3733488 3733601 -223790977 - L1MB1 LINE L1 -44 6145 6035 1280 188 90 0 chr3 3733622 3733888 -223790690 - AluJo SINE Alu -22 290 1 1359 231 65 39 chr3 3733901 3734317 -223790261 - L2 LINE L2 -407 2907 2481 377 329 150 28 chr3 3734349 3734901 -223789677 - L2 LINE L2 0 3313 2682 1511 90 9 9 chr3 3734901 3735112 -223789466 + L1PA10 LINE L1 5954 6164 -4 377 329 150 28 chr3 3735112 3735187 -223789391 - L2 LINE L2 -631 2682 2618 548 302 61 27 chr3 3735805 3736194 -223788384 + L1ME3A LINE L1 5551 5949 -217 360 0 0 0 chr3 3736216 3736256 -223788322 + (CA)n Simple_repeat Simple_repeat 1 40 0 29 28 0 0 chr3 3736494 3736530 -223788048 + AT_rich Low_complexity Low_complexity 1 36 0 999 182 0 17 chr3 3736943 3737119 -223787459 + FRAM SINE Alu 1 173 -3 1484 130 0 63 chr3 3737162 3737415 -223787163 - AluSg SINE Alu -73 237 1 1401 210 24 48 chr3 3737761 3738133 -223786445 + MLT1A1 LTR MaLR 1 363 -2 24 91 0 0 chr3 3738385 3738451 -223786127 + AT_rich Low_complexity Low_complexity 1 66 0 249 266 117 0 chr3 3738611 3738705 -223785873 + L2 LINE L2 3168 3272 0 21 0 0 0 chr3 3738811 3738832 -223785746 + AT_rich Low_complexity Low_complexity 1 21 0 265 316 0 0 chr3 3739665 3739744 -223784834 - MIR SINE MIR -54 208 130 288 137 0 0 chr3 3739930 3739981 -223784597 + (A)n Simple_repeat Simple_repeat 1 51 0 297 0 0 0 chr3 3740747 3740780 -223783798 + (CA)n Simple_repeat Simple_repeat 2 34 0 1724 147 7 7 chr3 3740788 3741094 -223783484 - MER47A DNA MER2_type -1 365 60 376 309 57 17 chr3 3741878 3742053 -223782525 - MLT1L LTR MaLR -345 270 89 1076 287 176 33 chr3 3742550 3743499 -223781079 - L2 LINE L2 -4 3309 2216 374 264 0 8 chr3 3744244 3744372 -223780206 - L1MB7 LINE L1 -5 6161 6043 4813 80 35 1 chr3 3744664 3745330 -223779248 - L1PA8A LINE L1 0 6131 5444 4396 106 10 0 chr3 3745330 3746059 -223778519 + L1P LINE L1 4690 5422 -743 2210 103 0 13 chr3 3746060 3746362 -223778216 - AluSc SINE Alu -11 298 1 208 176 0 0 chr3 3746656 3746690 -223777888 - MIR SINE MIR -23 239 206 180 205 26 0 chr3 3746782 3746821 -223777757 + MIR SINE MIR 200 239 -23 186 172 0 125 chr3 3746821 3746885 -223777693 + MIR SINE MIR 200 255 -7 378 201 35 7 chr3 3746886 3747030 -223777548 + (TATATG)n Simple_repeat Simple_repeat 3 150 0 560 244 60 50 chr3 3747139 3747340 -223777238 - MIR SINE MIR -58 204 2 285 309 56 32 chr3 3747712 3747838 -223776740 + L2 LINE L2 3167 3295 -18 1667 177 3 3 chr3 3748858 3749146 -223775432 + AluJo SINE Alu 1 288 -24 361 373 20 15 chr3 3749595 3749796 -223774782 + MIR SINE MIR 51 252 -10 2041 41 0 34 chr3 3750032 3750301 -223774277 + L1PA7 LINE L1 5894 6153 -1 1376 118 86 14 chr3 3750996 3751216 -223773362 - AluSx SINE Alu -76 236 1 561 311 50 25 chr3 3751282 3751520 -223773058 - MIR SINE MIR 0 262 19 757 247 174 12 chr3 3752566 3752910 -223771668 + Charlie4a DNA MER1_type 82 481 -27 2080 133 3 7 chr3 3753269 3753577 -223771001 - AluSx SINE Alu -5 307 1 541 303 76 5 chr3 3753578 3753763 -223770815 + MIR SINE MIR 48 245 -17 339 299 125 21 chr3 3754244 3754675 -223769903 - L1ME3A LINE L1 -275 5895 5420 325 293 30 15 chr3 3754692 3754890 -223769688 - L1ME3A LINE L1 -860 5286 5086 2183 55 0 15 chr3 3754899 3755171 -223769407 + AluY SINE Alu 44 311 0 433 284 46 0 chr3 3755720 3755829 -223768749 + MER81 DNA DNA 1 114 0 2596 53 0 0 chr3 3756137 3756439 -223768139 - AluY SINE Alu -9 302 1 1232 199 11 14 chr3 3757769 3758045 -223766533 + MLT1B LTR MaLR 116 390 0 583 279 7 13 chr3 3758619 3758773 -223765805 + MER58A DNA MER1_type 3 155 0 2021 124 0 14 chr3 3758805 3759096 -223765482 + AluSx SINE Alu 7 293 -19 234 0 0 0 chr3 3759348 3759374 -223765204 + (TG)n Simple_repeat Simple_repeat 2 27 0 24 32 0 0 chr3 3760257 3760288 -223764290 + AT_rich Low_complexity Low_complexity 1 31 0 1551 175 7 78 chr3 3760389 3760697 -223763881 + AluJo SINE Alu 1 286 -26 228 67 0 0 chr3 3760698 3760728 -223763850 + (CA)n Simple_repeat Simple_repeat 2 31 0 204 125 0 0 chr3 3760729 3760761 -223763817 + (TATG)n Simple_repeat Simple_repeat 3 34 0 465 337 57 26 chr3 3761333 3761526 -223763052 - MIR SINE MIR -11 251 53 204 122 73 0 chr3 3761600 3761682 -223762896 + (TA)n Simple_repeat Simple_repeat 1 88 0 2058 100 0 78 chr3 3763191 3763522 -223761056 + AluY SINE Alu 1 305 -6 3479 93 12 14 chr3 3764347 3764842 -223759736 + LOR1a LTR ERV1 1 494 -3 1893 167 0 19 chr3 3765539 3765884 -223758694 - AluJb SINE Alu 0 339 1 192 235 136 25 chr3 3765965 3766046 -223758532 - MIR SINE MIR -153 109 20 1372 272 79 88 chr3 3767295 3768319 -223756259 + L2 LINE L2 2289 3313 0 198 143 0 0 chr3 3769269 3769304 -223755274 + (TG)n Simple_repeat Simple_repeat 1 35 0 1865 176 66 15 chr3 3770621 3771122 -223753456 - MLT2A2 LTR ERVL -1 553 3 466 352 5 9 chr3 3771508 3771718 -223752860 + MIR SINE MIR 42 250 -12 1788 151 7 0 chr3 3771813 3772116 -223752462 - AluSx SINE Alu 0 305 1 402 234 110 28 chr3 3772211 3772356 -223752222 - L2 LINE L2 -48 3265 3109 182 327 0 0 chr3 3774702 3774757 -223749821 + MIR SINE MIR 87 141 -67 643 269 34 17 chr3 3775004 3775179 -223749399 + MIR SINE MIR 75 252 -10 1930 191 26 0 chr3 3775257 3775635 -223748943 - MLT1B LTR MaLR 0 390 3 2214 92 3 0 chr3 3775742 3776047 -223748531 + AluSq SINE Alu 1 306 0 239 282 13 13 chr3 3776258 3776336 -223748242 + MIR SINE MIR 71 148 -114 9384 133 15 8 chr3 3776900 3778475 -223746103 + Tigger1 DNA MER2_type 3 1589 -829 927 126 16 0 chr3 3778476 3778603 -223745975 + AluSq/x SINE Alu 3 131 -181 356 153 34 0 chr3 3778603 3778721 -223745857 + (TA)n Simple_repeat Simple_repeat 1 122 0 4472 144 33 9 chr3 3778742 3779553 -223745025 + Tigger1 DNA MER2_type 1577 2407 -11 828 129 0 23 chr3 3780196 3780319 -223744259 + AluJo/FLAM SINE Alu 1 122 -180 2202 120 0 13 chr3 3780319 3780635 -223743943 - AluSx SINE Alu 0 312 1 708 147 0 0 chr3 3780748 3780850 -223743728 + FRAM SINE Alu 45 146 -30 802 241 21 70 chr3 3781438 3781766 -223742812 - MARNA DNA Mariner -120 466 155 224 254 0 56 chr3 3782074 3782145 -223742433 - MIR SINE MIR -127 135 69 257 310 118 48 chr3 3784505 3784734 -223739844 + L3 LINE CR1 1253 1497 -80 484 284 44 29 chr3 3785026 3785230 -223739348 + L2 LINE L2 3107 3313 0 300 291 6 91 chr3 3786668 3786724 -223737854 - MIR SINE MIR -34 228 169 1820 138 71 15 chr3 3786724 3787049 -223737529 + MER61A LTR ERV1 1 343 0 300 291 6 91 chr3 3787049 3787157 -223737421 - MIR SINE MIR -93 169 78 254 223 66 0 chr3 3787325 3787408 -223737170 - MIR SINE MIR -65 143 90 504 45 0 0 chr3 3787572 3787639 -223736939 + (CA)n Simple_repeat Simple_repeat 2 68 0 2189 114 13 3 chr3 3787810 3788117 -223736461 + AluSx SINE Alu 1 310 -2 292 308 17 50 chr3 3789448 3789568 -223735010 - MIR3 SINE MIR -15 193 78 257 233 17 0 chr3 3789596 3789656 -223734922 - MIR SINE MIR -3 259 199 21 36 0 0 chr3 3790129 3790157 -223734421 + AT_rich Low_complexity Low_complexity 1 28 0 2331 92 13 0 chr3 3790160 3790463 -223734115 + AluSp SINE Alu 1 307 -6 276 343 153 7 chr3 3790651 3790788 -223733790 - L2 LINE L2 -5 3267 3111 850 326 86 10 chr3 3790869 3791265 -223733313 - MLT1J1 LTR MaLR -13 433 8 2161 128 0 28 chr3 3791440 3791761 -223732817 + AluSx SINE Alu 1 312 0 1792 171 26 61 chr3 3792363 3792819 -223731759 + L1MB8 LINE L1 5732 6171 -7 7261 47 3 0 chr3 3793329 3794401 -223730177 + L1PA5 LINE L1 5079 6153 -1 23181 59 7 9 chr3 3796573 3799749 -223724829 - L1P LINE L1 -2962 3184 14 202 281 167 21 chr3 3799872 3799968 -223724610 - L2 LINE L2 -42 3230 3121 216 372 74 8 chr3 3800142 3800263 -223724315 + MIR SINE MIR 21 149 -113 1092 216 124 63 chr3 3800364 3800549 -223724029 + MLT1H LTR MaLR 7 179 -370 2289 95 0 7 chr3 3800549 3800855 -223723723 - AluY SINE Alu -7 304 1 1092 216 124 63 chr3 3800855 3801177 -223723401 + MLT1H LTR MaLR 179 545 -4 1427 167 10 33 chr3 3801494 3801594 -223722984 - L1MA5 LINE L1 -107 6193 6092 2106 142 0 3 chr3 3801594 3801905 -223722673 + AluSx SINE Alu 3 312 0 1427 167 10 33 chr3 3801905 3802110 -223722468 - L1MA5 LINE L1 -208 6092 5895 619 193 29 0 chr3 3802093 3802233 -223722345 + L1 LINE L1 5065 5208 -938 * 1045 280 100 32 chr3 3802314 3802785 -223721793 + L2 LINE L2 2804 3306 -7 428 306 121 29 chr3 3802911 3803117 -223721461 - MIR SINE MIR -12 250 26 277 114 0 0 chr3 3803134 3803178 -223721400 + U5 snRNA snRNA 1 44 -72 1957 146 0 13 chr3 3803338 3803639 -223720939 - AluSx SINE Alu -15 297 1 309 284 32 0 chr3 3804244 3804339 -223720239 + L1MC4 LINE L1 6609 6706 -1336 240 211 0 0 chr3 3804339 3804396 -223720182 + (TA)n Simple_repeat Simple_repeat 2 58 0 271 145 0 65 chr3 3804447 3804509 -223720069 - Alu SINE Alu -3 298 241 500 43 29 0 chr3 3804571 3804641 -223719937 + (TCTA)n Simple_repeat Simple_repeat 2 73 0 271 366 54 71 chr3 3807149 3807499 -223717079 - L2 LINE L2 -22 3250 2907 404 313 162 14 chr3 3807499 3807850 -223716728 + L1ME4a LINE L1 5457 5859 -262 321 308 61 33 chr3 3807860 3808074 -223716504 + L1ME4a LINE L1 5899 6118 -3 186 143 0 0 chr3 3808812 3808847 -223715731 + (TA)n Simple_repeat Simple_repeat 2 36 0 258 105 0 0 chr3 3810435 3810473 -223714105 + (CA)n Simple_repeat Simple_repeat 1 38 0 259 260 27 0 chr3 3810610 3810683 -223713895 + MIR SINE MIR 178 252 -10 198 118 0 0 chr3 3810696 3810730 -223713848 + (ATG)n Simple_repeat Simple_repeat 2 35 0 409 333 16 38 chr3 3810911 3811097 -223713481 + MER5A DNA MER1_type 2 183 -6 206 181 0 56 chr3 3812757 3812829 -223711749 + T-rich Low_complexity Low_complexity 5 72 0 215 254 98 142 chr3 3813378 3813583 -223710995 - L3 LINE CR1 -204 1373 1178 475 146 171 8 chr3 3813637 3813760 -223710818 - L1MA9 LINE L1 -6 6306 6164 195 69 0 0 chr3 3813760 3813789 -223710789 + (TG)n Simple_repeat Simple_repeat 2 30 0 281 360 18 0 chr3 3814035 3814149 -223710429 - L2 LINE L2 -998 2316 2201 486 321 40 36 chr3 3814238 3814487 -223710091 + MER102a DNA MER1_type 81 330 0 1483 182 78 7 chr3 3814495 3814764 -223709814 + AluJb SINE Alu 1 288 -24 311 286 75 106 chr3 3814909 3815070 -223709508 - MIR3 SINE MIR -7 201 46 337 279 140 7 chr3 3817477 3817613 -223706965 + MIR SINE MIR 4 157 -105 1356 213 49 21 chr3 3817766 3818094 -223706484 + MER58B DNA MER1_type 4 340 -1 24 53 0 0 chr3 3820027 3820065 -223704513 + AT_rich Low_complexity Low_complexity 1 38 0 428 245 32 39 chr3 3820311 3820466 -223704112 - L1ME2 LINE L1 -10 6154 6001 378 222 25 12 chr3 3821373 3821454 -223703124 + L2 LINE L2 3226 3307 -6 1720 157 52 0 chr3 3821579 3821870 -223702708 + AluSx SINE Alu 1 305 0 446 331 43 27 chr3 3822348 3822605 -223701973 - L3 LINE CR1 -157 1420 1160 211 176 15 29 chr3 3823118 3823186 -223701392 + (TATG)n Simple_repeat Simple_repeat 3 69 0 1286 194 20 103 chr3 3823396 3823794 -223700784 + MLT1A1 LTR MaLR 1 365 0 423 331 24 24 chr3 3824530 3824699 -223699879 + MLT1K LTR MaLR 225 393 -195 1881 165 57 39 chr3 3824780 3825187 -223699391 - MLT2D LTR ERVL 0 414 1 2013 95 0 18 chr3 3825884 3826157 -223698421 + AluSq SINE Alu 31 298 -15 428 263 53 26 chr3 3827339 3827491 -223697087 - MIR3 SINE MIR -21 187 32 259 188 31 31 chr3 3828766 3828830 -223695748 - MIR3 SINE MIR -47 161 98 545 86 0 12 chr3 3828910 3828991 -223695587 - MADE1 DNA Mariner 0 80 1 284 258 61 30 chr3 3828992 3829124 -223695454 - LTR67 LTR ERVL -9 548 413 573 234 22 7 chr3 3830144 3830281 -223694297 - MIR SINE MIR -38 224 86 300 300 74 45 chr3 3830794 3831037 -223693541 + L1M4 LINE L1 2879 3128 -3018 2200 116 0 13 chr3 3831129 3831440 -223693138 + AluSx SINE Alu 1 307 -5 375 192 70 6 chr3 3831713 3831801 -223692777 - MER5A DNA MER1_type -1 188 86 189 196 0 0 chr3 3832125 3832171 -223692407 + (TA)n Simple_repeat Simple_repeat 2 47 0 2128 65 0 8 chr3 3832231 3832493 -223692085 + AluY SINE Alu 29 288 -23 721 138 3 20 chr3 3832549 3832896 -223691682 + (TA)n Simple_repeat Simple_repeat 1 341 0 307 203 72 0 chr3 3832899 3832968 -223691610 - L1MCa LINE L1 -4361 2065 1992 657 116 35 0 chr3 3832974 3833147 -223691431 + (TA)n Simple_repeat Simple_repeat 1 179 0 284 165 11 0 chr3 3833161 3833252 -223691326 + (TA)n Simple_repeat Simple_repeat 1 92 0 314 292 22 0 chr3 3833254 3833343 -223691235 + L1MC4 LINE L1 6613 6703 -1339 516 102 51 21 chr3 3833343 3833580 -223690998 + (TA)n Simple_repeat Simple_repeat 1 244 0 492 111 70 0 chr3 3833599 3833860 -223690718 + (TA)n Simple_repeat Simple_repeat 1 279 0 542 276 167 10 chr3 3834572 3834764 -223689814 + MIR SINE MIR 20 241 -21 201 74 0 0 chr3 3834770 3834797 -223689781 + (TG)n Simple_repeat Simple_repeat 2 28 0 1879 141 0 29 chr3 3834828 3835134 -223689444 + AluJb SINE Alu 12 308 -4 867 168 66 6 chr3 3835431 3835598 -223688980 - FRAM SINE Alu 0 176 1 369 0 0 0 chr3 3836527 3836568 -223688010 + (CA)n Simple_repeat Simple_repeat 1 41 0 726 237 23 6 chr3 3837100 3837273 -223687305 - MER5B DNA MER1_type -2 176 1 1901 138 47 0 chr3 3837431 3837729 -223686849 + AluSx SINE Alu 1 312 0 542 242 86 86 chr3 3838959 3839228 -223685350 - MER102b DNA MER1_type -3 338 70 1704 232 50 40 chr3 3840202 3840367 -223684211 - MER39 LTR ERV1 0 707 545 3502 189 104 23 chr3 3840367 3841164 -223683414 + MER21B LTR ERV1 1 862 -1 1704 232 50 40 chr3 3841164 3841512 -223683066 - MER39 LTR ERV1 -162 545 8 466 317 77 18 chr3 3841602 3841823 -223682755 + MIR SINE MIR 26 259 -3 337 286 58 94 chr3 3841916 3842140 -223682438 - MIR SINE MIR -15 247 32 848 199 6 0 chr3 3842539 3842700 -223681878 - FRAM SINE Alu -14 162 1 320 337 200 6 chr3 3843178 3843353 -223681225 + MIR SINE MIR 2 210 -52 1214 253 50 19 chr3 3843365 3843728 -223680850 - MLT1A2 LTR MaLR 0 374 1 1344 172 0 5 chr3 3843758 3843979 -223680599 - AluJb SINE Alu -7 305 86 252 320 0 0 chr3 3844147 3844225 -223680353 + MIR SINE MIR 146 223 -39 317 211 0 0 chr3 3844225 3844282 -223680296 - MLT1A1 LTR MaLR 0 365 309 3598 175 55 48 chr3 3844452 3844924 -223679654 - L1MB7 LINE L1 -54 6130 5649 2591 191 60 15 chr3 3844924 3845462 -223679116 + MER68 LTR ERV1 1 562 0 3598 175 55 48 chr3 3845462 3845907 -223678671 - L1MB7 LINE L1 -535 5649 5208 278 266 128 11 chr3 3846919 3847013 -223677565 + L2 LINE L2 3209 3313 0 2031 121 28 3 chr3 3847098 3847388 -223677190 - AluSx SINE Alu -15 297 1 1090 82 0 0 chr3 3847388 3847523 -223677055 - AluSq/x SINE Alu -177 135 1 579 246 175 6 chr3 3848561 3848732 -223675846 - MIR SINE MIR -26 236 37 2239 117 3 0 chr3 3848763 3849071 -223675507 - AluSx SINE Alu -3 309 1 216 167 0 0 chr3 3849365 3849401 -223675177 + (TG)n Simple_repeat Simple_repeat 1 36 0 903 306 77 31 chr3 3849426 3849589 -223674989 + L2 LINE L2 2903 3057 -256 1928 147 58 6 chr3 3849589 3849935 -223674643 + MLT1A1 LTR MaLR 1 364 -1 903 306 77 31 chr3 3849935 3850163 -223674415 + L2 LINE L2 3057 3312 -1 288 395 9 0 chr3 3850989 3851103 -223673475 + MIR SINE MIR 38 152 -56 1407 199 8 105 chr3 3851149 3851550 -223673028 - MLT1A1 LTR MaLR -1 364 3 244 268 42 92 chr3 3853073 3853215 -223671363 + MER5A DNA MER1_type 27 161 -28 958 291 86 35 chr3 3853721 3854126 -223670452 - MLT1K LTR MaLR -1 587 162 1426 162 62 16 chr3 3854497 3854805 -223669773 + L1MC2 LINE L1 6014 6335 -9 237 189 54 54 chr3 3854828 3854902 -223669676 + L2 LINE L2 3177 3250 -63 924 194 54 70 chr3 3854937 3855195 -223669383 - MER46C DNA MER2_type -5 333 80 2078 79 76 7 chr3 3857082 3857373 -223667205 + AluY SINE Alu 1 311 0 518 127 0 0 chr3 3857432 3857511 -223667067 + AluSg1 SINE Alu 1 79 -230 2523 49 0 0 chr3 3859566 3859870 -223664708 + AluY SINE Alu 7 310 -1 186 0 28 56 chr3 3860038 3860074 -223664504 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 1945 207 15 67 chr3 3860182 3860400 -223664178 - L1 LINE L1 -904 5242 5014 1672 99 0 5 chr3 3860400 3860623 -223663955 - AluSg/x SINE Alu -18 294 73 1945 207 15 67 chr3 3860623 3861164 -223663414 - L1 LINE L1 -1132 5014 4562 1068 328 142 39 chr3 3861497 3862510 -223662068 - L3 LINE CR1 -66 1511 394 415 344 56 25 chr3 3862483 3862870 -223661708 + L2 LINE L2 2612 3104 -209 * 426 294 79 99 chr3 3863099 3863633 -223660945 - L2 LINE L2 -457 2857 2335 445 303 0 0 chr3 3863638 3863757 -223660821 + MER94 DNA DNA 16 134 0 422 279 146 84 chr3 3863772 3864368 -223660210 - L2 LINE L2 -1020 2294 1662 467 354 40 5 chr3 3864719 3864917 -223659661 - MIR SINE MIR -27 235 31 23 33 0 0 chr3 3866715 3866745 -223657833 + AT_rich Low_complexity Low_complexity 1 30 0 271 377 39 8 chr3 3868122 3868252 -223656326 + MIR3 SINE MIR 2 135 -73 901 220 10 0 chr3 3868258 3868458 -223656120 + MER3 DNA MER1_type 3 204 -5 1555 192 44 49 chr3 3869126 3869532 -223655046 - MER21B LTR ERV1 -57 806 403 384 278 61 0 chr3 3870016 3870131 -223654447 - MIR SINE MIR -59 203 82 2171 103 0 0 chr3 3871283 3871595 -223652983 + AluSg SINE Alu 1 312 0 559 200 42 18 chr3 3872062 3872227 -223652351 - MLT1A1 LTR MaLR -196 169 1 225 94 0 0 chr3 3873403 3873435 -223651143 + (CCA)n Simple_repeat Simple_repeat 1 32 0 183 80 0 0 chr3 3873655 3873680 -223650898 + (T)n Simple_repeat Simple_repeat 1 25 0 1716 167 0 33 chr3 3874062 3874367 -223650211 + AluJb SINE Alu 7 301 -11 674 306 51 4 chr3 3877914 3878149 -223646429 + MIR SINE MIR 9 254 -8 220 0 86 0 chr3 3878266 3878301 -223646277 + A-rich Low_complexity Low_complexity 2 39 0 1995 66 44 0 chr3 3878577 3878849 -223645729 - L1PA13 LINE L1 -19 6144 5861 2153 110 3 7 chr3 3878885 3879184 -223645394 + AluSx SINE Alu 1 298 -14 978 82 0 15 chr3 3879238 3879398 -223645180 + AluY SINE Alu 150 307 0 221 116 0 23 chr3 3881148 3881191 -223643387 + (TTCTCC)n Simple_repeat Simple_repeat 3 44 0 2490 46 7 0 chr3 3881205 3881512 -223643066 + AluY SINE Alu 1 309 -2 235 311 14 14 chr3 3881577 3881651 -223642927 + MIR SINE MIR 19 92 -116 210 343 126 40 chr3 3882852 3883050 -223641528 - L2 LINE L2 -509 2805 2591 2695 297 100 32 chr3 3883156 3884175 -223640403 + L2 LINE L2 1635 2769 -544 2148 154 83 8 chr3 3884175 3884572 -223640006 + MSTA LTR MaLR 2 428 0 2695 297 100 32 chr3 3884572 3884985 -223639593 + L2 LINE L2 2769 3153 -160 23 68 0 0 chr3 3885729 3885773 -223638805 + AT_rich Low_complexity Low_complexity 1 44 0 28 53 0 40 chr3 3886100 3886175 -223638403 + AT_rich Low_complexity Low_complexity 1 72 0 191 235 123 12 chr3 3886386 3886467 -223638111 - MIR SINE MIR -77 185 96 423 224 96 8 chr3 3886739 3886864 -223637714 - MER103 DNA DNA 0 166 31 1044 113 0 0 chr3 3886865 3887007 -223637571 + THE1C LTR MaLR 1 142 -233 1874 129 46 16 chr3 3888245 3888548 -223636030 - AluSx SINE Alu 0 312 1 568 234 22 7 chr3 3889396 3889533 -223635045 + MIR SINE MIR 86 224 -38 263 232 0 14 chr3 3890616 3890685 -223633893 + LTR67 LTR ERVL 481 548 -9 540 86 0 12 chr3 3890686 3890767 -223633811 + MADE1 DNA Mariner 1 80 0 262 188 31 31 chr3 3890847 3890911 -223633667 + MIR3 SINE MIR 98 161 -47 449 248 47 16 chr3 3891550 3891679 -223632899 - MER94 DNA DNA -1 133 1 2411 129 89 65 chr3 3892697 3892750 -223631828 + MER34 LTR ERV1 1 51 -491 1696 164 0 14 chr3 3892750 3893056 -223631522 - AluJo SINE Alu 0 302 1 2411 129 89 65 chr3 3893056 3893527 -223631051 + MER34 LTR ERV1 51 539 -3 349 293 67 7 chr3 3893570 3893720 -223630858 - L1ME3A LINE L1 -233 5920 5762 645 285 65 19 chr3 3893764 3894458 -223630120 - L1ME3A LINE L1 -536 5609 4884 522 278 109 24 chr3 3894571 3895218 -223629360 - L1MEd LINE L1 -4596 1714 971 314 363 64 58 chr3 3895293 3895670 -223628908 - L1MEd LINE L1 -5737 382 4 1990 146 0 0 chr3 3895750 3896044 -223628534 + AluSx SINE Alu 1 294 -18 565 196 0 0 chr3 3896047 3896139 -223628439 + AluS SINE Alu 1 92 -220 1500 120 43 0 chr3 3896240 3896488 -223628090 + AluSg/x SINE Alu 66 322 0 2288 91 3 0 chr3 3896498 3896783 -223627795 + AluSp SINE Alu 3 288 -25 226 0 59 0 chr3 3896792 3896826 -223627752 + (TAAAA)n Simple_repeat Simple_repeat 5 40 0 200 219 0 0 chr3 3897586 3897627 -223626951 - MER5C DNA MER1_type -6 318 278 323 224 37 112 chr3 3897772 3897906 -223626672 - MER5C DNA MER1_type -200 124 1 218 324 63 63 chr3 3898135 3898246 -223626332 + L2 LINE L2 3141 3251 -21 270 300 129 36 chr3 3898721 3898861 -223625717 + MIR3 SINE MIR 6 158 -50 1537 177 7 14 chr3 3898897 3899209 -223625369 + AluJo SINE Alu 1 310 0 2183 113 0 7 chr3 3899425 3899726 -223624852 + AluSg SINE Alu 1 299 -11 435 281 117 18 chr3 3900858 3901029 -223623549 + MER5A DNA MER1_type 1 188 -1 23 0 0 0 chr3 3902118 3902141 -223622437 + AT_rich Low_complexity Low_complexity 1 23 0 1712 122 90 41 chr3 3902818 3903161 -223621417 + MER46B DNA MER2_type 1 235 -1 305 279 108 18 chr3 3903182 3903293 -223621285 + MER5A DNA MER1_type 55 175 -14 1266 122 0 5 chr3 3903293 3903481 -223621097 - AluSg/x SINE Alu -10 302 116 356 258 139 40 chr3 3903584 3903735 -223620843 - MER21B LTR ERV1 -600 263 98 2261 121 16 0 chr3 3904024 3904330 -223620248 - AluSx SINE Alu -1 311 1 349 371 29 11 chr3 3905285 3905460 -223619118 + MIR3 SINE MIR 25 202 -6 576 228 168 0 chr3 3906920 3907069 -223617509 + MER5A DNA MER1_type 9 182 -7 197 301 12 60 chr3 3907138 3907221 -223617357 - MER5A DNA MER1_type -34 155 77 2045 119 16 10 chr3 3907250 3907560 -223617018 + AluSx SINE Alu 1 312 0 950 110 50 33 chr3 3907563 3907745 -223616833 + L1MA5 LINE L1 6108 6292 -8 25 0 0 0 chr3 3908110 3908135 -223616443 + AT_rich Low_complexity Low_complexity 1 25 0 21 0 0 0 chr3 3908979 3909000 -223615578 + AT_rich Low_complexity Low_complexity 1 21 0 2194 104 3 7 chr3 3909014 3909303 -223615275 - AluSx SINE Alu -24 288 1 1620 178 16 48 chr3 3909440 3909563 -223615015 + AluJo SINE Alu 1 126 -186 2077 104 14 0 chr3 3909563 3909863 -223614715 - AluSx SINE Alu 0 304 1 1620 178 16 48 chr3 3909863 3910052 -223614526 + AluJo SINE Alu 126 304 -8 284 253 191 25 chr3 3910293 3910455 -223614123 - MIR SINE MIR -7 255 67 319 196 165 62 chr3 3910551 3910648 -223613930 + MER5B DNA MER1_type 67 173 -5 1669 97 9 0 chr3 3910933 3911149 -223613429 - AluSq SINE Alu -95 218 1 780 306 51 63 chr3 3912739 3913287 -223611291 + L2 LINE L2 2764 3303 -10 436 236 89 52 chr3 3915151 3915342 -223609236 - L2 LINE L2 -22 3291 3094 2335 66 3 7 chr3 3916166 3916470 -223608108 + AluY SINE Alu 5 307 -4 31 0 0 0 chr3 3916515 3916546 -223608032 + AT_rich Low_complexity Low_complexity 1 31 0 337 298 0 19 chr3 3916889 3916993 -223607585 - MIR SINE MIR -113 149 48 936 135 101 6 chr3 3918197 3918375 -223606203 + MLT1A1 LTR MaLR 170 364 -1 1052 226 73 20 chr3 3918399 3918786 -223605792 + MLT1C LTR MaLR 45 460 -7 1915 120 38 7 chr3 3920350 3920641 -223603937 - AluSx SINE Alu -12 300 1 2879 200 32 60 chr3 3920653 3920986 -223603592 - L1MB8 LINE L1 0 6178 5837 2292 75 34 0 chr3 3920986 3921278 -223603300 - AluSq SINE Alu -11 302 1 2879 200 32 60 chr3 3921278 3921520 -223603058 - L1MB8 LINE L1 -341 5837 5590 237 77 26 0 chr3 3921520 3921559 -223603019 + Alu SINE Alu 255 294 -7 2879 200 32 60 chr3 3921559 3922446 -223602132 - L1MB8 LINE L1 -588 5590 4726 261 325 0 0 chr3 3923126 3923203 -223601375 + MIR SINE MIR 84 160 -102 315 0 0 0 chr3 3923271 3923306 -223601272 + (TG)n Simple_repeat Simple_repeat 2 36 0 347 338 162 0 chr3 3923796 3923938 -223600640 - L2 LINE L2 -1 3271 3107 5594 91 20 5 chr3 3924047 3924770 -223599808 - L1PA13 LINE L1 -5 6158 5447 2352 81 0 13 chr3 3924770 3925077 -223599501 - AluY SINE Alu -8 303 1 5594 91 20 5 chr3 3925077 3925838 -223598740 - L1PA13 LINE L1 -716 5447 4631 457 332 150 31 chr3 3925922 3926341 -223598237 - L2 LINE L2 0 3313 2845 652 358 49 0 chr3 3926587 3926830 -223597748 - MIR SINE MIR -6 256 2 23 54 0 0 chr3 3927387 3927424 -223597154 + AT_rich Low_complexity Low_complexity 1 37 0 2695 112 2 10 chr3 3928168 3928586 -223595992 + L1PB1 LINE L1 5736 6150 -1 261 0 0 0 chr3 3929360 3929389 -223595189 + (TTTTTG)n Simple_repeat Simple_repeat 2 30 0 225 326 112 0 chr3 3929596 3929694 -223594884 + L2 LINE L2 3156 3264 -8 443 280 26 53 chr3 3930614 3930803 -223593775 - MIR SINE MIR -50 212 29 2333 102 0 10 chr3 3931016 3931329 -223593249 + AluSg SINE Alu 1 310 0 1908 152 40 3 chr3 3932880 3933177 -223591401 - AluSx SINE Alu -4 308 1 499 286 17 28 chr3 3933227 3933405 -223591173 + L2 LINE L2 3133 3308 -5 855 189 11 194 chr3 3933491 3933953 -223590625 - LTR24 LTR ERV1 0 525 188 350 296 37 0 chr3 3934070 3934178 -223590400 + L2 LINE L2 3192 3303 -10 991 153 6 12 chr3 3934425 3934617 -223589961 - AluSq SINE Alu 0 313 123 2381 46 0 0 chr3 3935390 3935725 -223588853 + AluY SINE Alu 2 336 0 311 98 39 0 chr3 3936694 3936796 -223587782 - AluJb SINE Alu 0 331 228 1072 128 7 0 chr3 3936796 3936944 -223587634 - AluJb SINE Alu -152 160 12 465 320 53 44 chr3 3937006 3937231 -223587347 + MIR SINE MIR 13 239 -23 864 164 102 40 chr3 3937630 3937856 -223586722 - MER4B LTR ERV1 -370 240 1 459 0 0 0 chr3 3937995 3938046 -223586532 + (TG)n Simple_repeat Simple_repeat 2 52 0 238 225 42 133 chr3 3938477 3938532 -223586046 - MIR3 SINE MIR -32 176 136 1587 163 29 59 chr3 3938532 3938838 -223585740 + AluJb SINE Alu 7 303 -9 238 225 42 133 chr3 3938838 3938902 -223585676 - MIR3 SINE MIR -72 136 68 438 284 30 0 chr3 3939914 3940048 -223584530 - MIR SINE MIR -72 190 53 412 271 60 36 chr3 3940194 3940360 -223584218 + MIR SINE MIR 20 189 -73 225 0 0 0 chr3 3940644 3940669 -223583909 + (CA)n Simple_repeat Simple_repeat 2 26 0 207 0 0 0 chr3 3940676 3940699 -223583879 + (GA)n Simple_repeat Simple_repeat 2 24 0 1574 211 109 5 chr3 3940699 3941111 -223583467 - MLT2B1 LTR ERVL -65 455 1 1960 205 99 79 chr3 3941270 3942080 -223582498 + LTR1B LTR ERV1 1 826 0 2242 107 3 0 chr3 3942624 3942932 -223581646 + AluSx SINE Alu 1 309 -3 488 297 78 21 chr3 3943117 3943309 -223581269 + MIR SINE MIR 32 234 -28 2091 107 45 0 chr3 3943317 3943606 -223580972 - AluSx SINE Alu -10 302 1 281 259 0 0 chr3 3943681 3943735 -223580843 - MIR SINE MIR -3 259 206 370 305 76 8 chr3 3944678 3944809 -223579769 + MIR SINE MIR 8 147 -115 193 293 106 49 chr3 3945151 3945274 -223579304 - L3b LINE CR1 -30 1553 1424 1963 152 0 3 chr3 3946073 3946369 -223578209 + AluJb SINE Alu 1 295 -17 698 230 94 88 chr3 3946451 3946810 -223577768 - MLT1D LTR MaLR 0 467 124 697 58 58 19 chr3 3946810 3946914 -223577664 + L1PA10 LINE L1 6055 6162 -6 698 230 94 88 chr3 3946914 3947032 -223577546 - MLT1D LTR MaLR -343 124 8 266 322 148 0 chr3 3949378 3949493 -223575085 + MIR3 SINE MIR 46 177 -31 1148 224 28 6 chr3 3949512 3949802 -223574776 - MLT1A1 LTR MaLR -8 357 50 1449 97 4 18 chr3 3951221 3951448 -223573130 - MER4E LTR ERV1 -27 739 516 2508 56 3 0 chr3 3951448 3951754 -223572824 - AluY SINE Alu -4 307 1 1792 174 24 0 chr3 3952928 3953226 -223571352 - AluJo SINE Alu -5 307 3 2373 93 3 0 chr3 3953253 3953555 -223571023 + AluSq SINE Alu 3 305 -8 1899 156 34 6 chr3 3953859 3954217 -223570361 - L1PB4 LINE L1 0 6156 5789 238 167 0 28 chr3 3954228 3954300 -223570278 + (TA)n Simple_repeat Simple_repeat 1 70 0 363 23 0 0 chr3 3954301 3954345 -223570233 + (TCTA)n Simple_repeat Simple_repeat 2 45 0 2199 128 8 23 chr3 3954347 3954446 -223570132 - L1PB4 LINE L1 -378 5778 5679 1610 211 0 3 chr3 3954446 3954745 -223569833 - AluJb SINE Alu -14 298 1 2199 128 8 23 chr3 3954745 3955034 -223569544 - L1PB4 LINE L1 -477 5679 5396 942 281 88 38 chr3 3955354 3955951 -223568627 + L2 LINE L2 2702 3313 0 349 307 0 8 chr3 3956735 3956862 -223567716 + (TTA)n Simple_repeat Simple_repeat 3 128 0 2212 226 72 14 chr3 3956928 3957500 -223567078 - MER82 DNA MER2_type -48 605 1 228 306 38 12 chr3 3957543 3957703 -223566875 + L1ME2 LINE L1 4978 5141 -1005 495 286 97 49 chr3 3957806 3958291 -223566287 + L1ME2 LINE L1 5270 5793 -371 2279 89 3 7 chr3 3958291 3958595 -223565983 - AluSx SINE Alu -8 304 2 495 286 97 49 chr3 3958595 3958741 -223565837 + L1ME2 LINE L1 5793 5931 -233 297 0 0 0 chr3 3958801 3958834 -223565744 + (CA)n Simple_repeat Simple_repeat 1 33 0 797 258 18 35 chr3 3959080 3959309 -223565269 + MIR SINE MIR 32 256 -6 783 186 0 0 chr3 3959473 3959597 -223564981 - FLAM_A SINE Alu -9 124 1 2330 84 0 7 chr3 3959628 3959924 -223564654 + AluSq SINE Alu 1 294 -19 189 0 0 0 chr3 3961821 3961842 -223562736 + (TC)n Simple_repeat Simple_repeat 2 22 0 * 276 77 0 0 chr3 3961841 3961880 -223562698 + (TG)n Simple_repeat Simple_repeat 2 40 0 1813 169 10 3 chr3 3962466 3962762 -223561816 - AluJo SINE Alu -10 302 5 290 296 148 7 chr3 3966194 3966336 -223558242 - L2 LINE L2 -191 3081 2920 23 0 0 0 chr3 3967339 3967362 -223557216 + AT_rich Low_complexity Low_complexity 1 23 0 2087 92 10 26 chr3 3967586 3967892 -223556686 + AluY SINE Alu 1 301 -10 2146 117 0 7 chr3 3968011 3968309 -223556269 + AluSx SINE Alu 1 296 -16 2406 59 0 3 chr3 3968626 3968931 -223555647 - AluY SINE Alu -6 305 2 1100 62 0 0 chr3 4069357 4069487 -223455091 + AluSg/x SINE Alu 171 300 -12 335 207 16 107 chr3 4069492 4069613 -223454965 - MIR SINE MIR -108 154 45 1429 159 96 7 chr3 4069613 4069884 -223454694 + AluJb SINE Alu 1 295 -17 338 363 55 31 chr3 4070879 4071204 -223453374 + LTR16C LTR ERVL 149 481 -10 566 283 11 11 chr3 4071228 4071412 -223453166 + Charlie7 DNA MER1_type 314 497 -2115 278 149 21 0 chr3 4071833 4071880 -223452698 - Charlie8 DNA MER1_type -1006 1411 1364 2135 123 3 0 chr3 4071952 4072252 -223452326 - AluSx SINE Alu -11 301 1 376 249 115 91 chr3 4072499 4072693 -223451885 + L1ME4a LINE L1 5631 5834 -287 1887 135 7 0 chr3 4072693 4072974 -223451604 - AluSg SINE Alu -15 295 13 376 249 115 91 chr3 4072974 4073032 -223451546 + L1ME4a LINE L1 5834 5889 -232 273 180 16 141 chr3 4073120 4073248 -223451330 - MLT1H LTR MaLR 0 549 438 1526 196 70 40 chr3 4073675 4073951 -223450627 + L1MC/D LINE L1 4789 5082 -1064 2267 110 0 10 chr3 4073951 4074260 -223450318 - AluSx SINE Alu -1 311 6 1526 196 70 40 chr3 4074260 4074385 -223450193 + L1MC/D LINE L1 5082 5202 -944 1038 209 60 18 chr3 4074385 4074667 -223449911 + AluSx SINE Alu 1 294 -8 431 236 183 21 chr3 4075022 4075213 -223449365 + L1MC/D LINE L1 5296 5517 -2291 1704 75 0 0 chr3 4075255 4075468 -223449110 - AluSg SINE Alu -97 213 1 257 109 455 0 chr3 4075919 4075974 -223448604 - MADE1 DNA Mariner 0 80 1 1838 149 35 0 chr3 4076363 4076479 -223448099 + AluSx SINE Alu 1 112 -200 414 0 0 0 chr3 4076479 4076525 -223448053 + (TAA)n Simple_repeat Simple_repeat 2 47 0 1838 149 35 0 chr3 4076525 4076696 -223447882 + AluSx SINE Alu 112 298 -14 865 233 106 24 chr3 4077025 4077317 -223447261 - L2 LINE L2 -429 2885 2570 1804 161 7 20 chr3 4077346 4077644 -223446934 + AluJb SINE Alu 1 294 -18 207 0 0 0 chr3 4077647 4077670 -223446908 + (TA)n Simple_repeat Simple_repeat 2 24 0 224 338 13 0 chr3 4078813 4078890 -223445688 - MIR SINE MIR -63 145 68 421 243 59 44 chr3 4079977 4080113 -223444465 - MIR3 SINE MIR -23 185 48 22 0 0 0 chr3 4080214 4080236 -223444342 + AT_rich Low_complexity Low_complexity 1 22 0 2030 63 0 0 chr3 4080521 4080760 -223443818 + AluY SINE Alu 72 310 -1 2002 94 91 0 chr3 4080766 4081041 -223443537 + AluSg SINE Alu 1 300 -10 24 0 0 0 chr3 4081502 4081526 -223443052 + AT_rich Low_complexity Low_complexity 1 24 0 285 293 113 7 chr3 4081532 4081682 -223442896 - L1ME4a LINE L1 0 6121 5956 448 246 36 27 chr3 4081944 4082054 -223442524 - AluSp SINE Alu -104 209 99 1205 222 122 47 chr3 4082054 4082502 -223442076 + L1M4 LINE L1 3051 3464 -2682 2152 113 0 0 chr3 4082502 4082810 -223441768 - AluSx SINE Alu 0 308 1 2219 106 0 0 chr3 4082816 4083130 -223441448 - AluSx SINE Alu 0 314 1 1205 222 122 47 chr3 4083130 4083245 -223441333 + L1M4 LINE L1 3468 3666 -2480 669 228 39 22 chr3 4085043 4085223 -223439355 + MER3 DNA MER1_type 1 183 -26 276 289 75 54 chr3 4085434 4085673 -223438905 + L2 LINE L2 2734 2977 -337 2399 58 0 3 chr3 4085742 4086034 -223438544 + AluY SINE Alu 1 291 -20 647 230 15 0 chr3 4087102 4087237 -223437341 + MER3 DNA MER1_type 2 138 -71 2137 129 0 19 chr3 4087243 4087554 -223437024 + AluSg SINE Alu 1 305 -5 202 358 0 0 chr3 4087823 4087890 -223436688 - L2 LINE L2 -1 3271 3205 311 327 58 13 chr3 4088027 4088183 -223436395 - MIR SINE MIR -88 174 12 213 121 0 0 chr3 4088224 4088257 -223436321 + (TAGA)n Simple_repeat Simple_repeat 2 34 0 552 188 240 19 chr3 4088435 4088589 -223435989 - MER53 DNA DNA 0 189 2 2330 98 7 0 chr3 4088849 4089156 -223435422 - AluSp SINE Alu -4 309 1 325 246 144 8 chr3 4089426 4089544 -223435034 - L2 LINE L2 -10 3303 3170 2358 64 3 0 chr3 4090696 4090993 -223433585 - AluY SINE Alu -13 298 1 270 56 0 0 chr3 4091907 4091943 -223432635 + (GAAAA)n Simple_repeat Simple_repeat 2 37 0 221 222 79 32 chr3 4092250 4092313 -223432265 + MIR3 SINE MIR 129 194 -14 225 0 0 0 chr3 4092372 4092397 -223432181 + (TG)n Simple_repeat Simple_repeat 2 26 0 2034 121 0 0 chr3 4092402 4092684 -223431894 - AluSx SINE Alu -30 282 1 1920 122 15 0 chr3 4094945 4095216 -223429362 - AluSx SINE Alu -24 288 14 874 153 127 0 chr3 4095266 4095416 -223429162 + MER6B DNA MER2_type 37 205 -5 1818 192 68 21 chr3 4095699 4096127 -223428451 - MLT1C LTR MaLR -2 465 18 2156 125 0 3 chr3 4096356 4096660 -223427918 - AluSx SINE Alu -9 303 1 1152 149 123 0 chr3 4096951 4097146 -223427432 + MER20 DNA MER1_type 1 219 0 2227 103 7 0 chr3 4097586 4097886 -223426692 - AluSp SINE Alu -11 302 1 276 87 0 43 chr3 4098498 4098544 -223426034 - L2 LINE L2 -75 3238 3195 2009 138 6 6 chr3 4099379 4099691 -223424887 - AluSx SINE Alu 0 312 1 2139 95 18 7 chr3 4100004 4100307 -223424271 - AluSq SINE Alu 0 306 1 492 307 81 45 chr3 4101586 4101918 -223422660 - L2 LINE L2 -18 3295 2952 690 120 88 16 chr3 4101969 4102094 -223422484 + MER46A DNA MER2_type 103 236 0 2183 43 64 25 chr3 4102115 4102396 -223422182 + AluY SINE Alu 2 293 -18 854 192 48 12 chr3 4102674 4102841 -223421737 + L1MC4 LINE L1 6725 6897 -1145 10094 38 27 87 chr3 4102979 4104436 -223420142 + SVA Other Other 52 1595 -470 2028 151 0 3 chr3 4104436 4104748 -223419830 + AluSq SINE Alu 1 311 -2 2311 113 0 0 chr3 4104750 4105061 -223419517 + AluSx SINE Alu 1 311 -1 10094 38 27 87 chr3 4105061 4105078 -223419500 + SVA Other Other 1596 2065 0 893 81 16 0 chr3 4105081 4105204 -223419374 + FLAM_C SINE Alu 1 125 -18 1564 199 28 0 chr3 4105215 4105497 -223419081 - MER63B DNA MER1_type -146 290 1 22 0 0 0 chr3 4105528 4105550 -223419028 + AT_rich Low_complexity Low_complexity 1 22 0 1898 162 0 9 chr3 4105675 4105990 -223418588 - AluSx SINE Alu 0 312 1 697 233 43 0 chr3 4105995 4106158 -223418420 + MIR SINE MIR 61 230 -32 1382 144 0 19 chr3 4106160 4106375 -223418203 + AluSx SINE Alu 3 213 -99 31 0 0 0 chr3 4106865 4106896 -223417682 + AT_rich Low_complexity Low_complexity 1 31 0 1761 86 9 0 chr3 4106896 4107129 -223417449 - L1MA2 LINE L1 0 6304 6070 1916 144 0 34 chr3 4107218 4107538 -223417040 - AluJo SINE Alu -3 309 1 21 0 0 0 chr3 4108923 4108944 -223415634 + AT_rich Low_complexity Low_complexity 1 21 0 2392 71 7 3 chr3 4109606 4109902 -223414676 - AluSq SINE Alu -16 297 1 482 212 157 47 chr3 4110817 4111020 -223413558 + MIR SINE MIR 17 237 -25 2026 131 10 0 chr3 4111065 4111356 -223413222 + AluSx SINE Alu 1 294 -18 231 235 39 0 chr3 4111421 4111472 -223413106 + L1MC/D LINE L1 5451 5503 -2305 600 210 50 0 chr3 4111480 4111599 -223412979 + FAM SINE Alu 35 159 -26 841 189 211 32 chr3 4111680 4112078 -223412500 - LTR54B LTR ERV1 0 510 2 2025 124 14 0 chr3 4112091 4112382 -223412196 + AluSx SINE Alu 2 296 -16 2141 86 41 3 chr3 4112939 4113229 -223411349 + AluY SINE Alu 1 301 -10 371 266 107 35 chr3 4113625 4113794 -223410784 - MIR3 SINE MIR -6 202 22 22 35 0 0 chr3 4116439 4116468 -223408110 + AT_rich Low_complexity Low_complexity 1 29 0 189 0 0 0 chr3 4117797 4117818 -223406760 + (A)n Simple_repeat Simple_repeat 1 21 0 769 144 23 0 chr3 4118518 4118650 -223405928 - L1MA7 LINE L1 -2 6289 6155 2263 105 0 0 chr3 4118713 4119009 -223405569 + AluSx SINE Alu 1 296 -16 554 273 126 25 chr3 4119269 4119507 -223405071 - MIR SINE MIR 0 262 1 1600 158 3 44 chr3 4119785 4120082 -223404496 + AluJo SINE Alu 18 302 -10 910 118 7 29 chr3 4120140 4120276 -223404302 + FLAM_C SINE Alu 1 133 0 1978 118 21 3 chr3 4120378 4120666 -223403912 + AluSx SINE Alu 1 293 -19 268 152 30 0 chr3 4122417 4122483 -223402095 + (TTCA)n Simple_repeat Simple_repeat 3 70 0 1278 228 59 62 chr3 4122592 4122901 -223401677 - MER49 LTR ERV1 0 923 614 2062 139 3 10 chr3 4122901 4123211 -223401367 + AluSx SINE Alu 1 308 -4 1278 228 59 62 chr3 4123211 4123305 -223401273 - MER49 LTR ERV1 -309 614 521 1061 86 0 7 chr3 4123307 4123446 -223401132 + AluYb8 SINE Alu 1 138 -180 2340 106 3 0 chr3 4123448 4123759 -223400819 + AluSx SINE Alu 1 312 0 1128 128 32 23 chr3 4123760 4124100 -223400478 - MER49 LTR ERV1 -389 534 152 2675 36 0 3 chr3 4124100 4124406 -223400172 - AluY SINE Alu -2 309 5 186 310 0 69 chr3 4124502 4124589 -223399989 + MIR SINE MIR 33 113 -149 22 0 0 0 chr3 4124641 4124663 -223399915 + AT_rich Low_complexity Low_complexity 1 22 0 1223 91 32 43 chr3 4125182 4125368 -223399210 - AluSc SINE Alu -125 184 1 309 245 96 11 chr3 4125650 4125744 -223398834 - MER69 DNA AcHobo 0 2526 2425 927 209 90 0 chr3 4125744 4125945 -223398633 + L1MD2 LINE L1 5944 6162 -197 1080 230 0 30 chr3 4125945 4126180 -223398398 + AluSq SINE Alu 1 228 -85 352 173 0 0 chr3 4126283 4126335 -223398243 - Alu SINE Alu -250 52 1 1875 115 6 74 chr3 4126343 4126509 -223398069 - AluSx SINE Alu -21 291 154 2412 79 0 0 chr3 4126509 4126801 -223397777 - AluSg SINE Alu -5 305 14 1875 115 6 74 chr3 4126801 4126946 -223397632 - AluSx SINE Alu -158 154 1 334 191 32 0 chr3 4126950 4127013 -223397565 + MER97b DNA MER1_type? 113 177 -876 861 212 4 100 chr3 4127132 4127373 -223397205 + MER20 DNA MER1_type 2 219 0 285 318 171 0 chr3 4127594 4127764 -223396814 - MIR SINE MIR -12 250 52 771 174 0 14 chr3 4127830 4127968 -223396610 + AluJ SINE Alu 2 137 -175 1075 146 6 0 chr3 4128019 4128190 -223396388 + AluJ SINE Alu 141 312 0 2054 119 24 10 chr3 4128486 4128781 -223395797 - AluSx SINE Alu -13 299 1 1804 171 4 4 chr3 4129021 4129302 -223395276 + AluJb SINE Alu 1 281 -31 22 0 0 0 chr3 4129351 4129373 -223395205 + AT_rich Low_complexity Low_complexity 1 22 0 1326 181 115 0 chr3 4129374 4129662 -223394916 + L1MC2 LINE L1 6002 6322 -22 1020 145 0 13 chr3 4129669 4129847 -223394731 - AluSg/x SINE Alu 0 307 132 2407 104 0 0 chr3 4129847 4130156 -223394422 - AluSx SINE Alu -3 309 1 1817 157 13 53 chr3 4130167 4130485 -223394093 - AluSx SINE Alu -7 305 1 406 257 40 5 chr3 4130583 4130707 -223393871 - MIR3 SINE MIR -21 187 59 2044 125 3 27 chr3 4130708 4131005 -223393573 - AluSx SINE Alu -22 290 1 687 172 0 16 chr3 4131214 4131336 -223393242 + FRAM SINE Alu 57 176 0 1937 131 52 3 chr3 4131341 4131631 -223392947 + AluSx SINE Alu 1 304 -8 2198 100 0 0 chr3 4132080 4132359 -223392219 + AluY SINE Alu 1 279 -32 180 0 0 0 chr3 4132361 4132381 -223392197 + (TAAA)n Simple_repeat Simple_repeat 1 20 0 234 213 82 16 chr3 4132448 4132509 -223392069 + LTR8 LTR ERV1 238 302 -389 400 115 0 16 chr3 4132944 4133005 -223391573 + AluS SINE Alu 2 61 -257 2277 97 0 3 chr3 4134598 4134887 -223389691 - AluSx SINE Alu -24 288 1 185 0 0 39 chr3 4135046 4135072 -223389506 + (CAAA)n Simple_repeat Simple_repeat 2 26 0 2200 111 0 7 chr3 4135176 4135473 -223389105 - AluSq SINE Alu -18 295 1 375 229 99 15 chr3 4135858 4135989 -223388589 - LTR16A1 LTR ERVL -3 454 313 258 333 11 0 chr3 4136591 4136681 -223387897 + MLT1F1 LTR MaLR 5 95 -498 970 251 127 39 chr3 4136803 4137080 -223387498 + MLT1F1 LTR MaLR 104 415 -152 1672 122 80 0 chr3 4137080 4137317 -223387261 - AluSx SINE Alu -13 299 44 970 251 127 39 chr3 4137317 4137484 -223387094 + MLT1F1 LTR MaLR 415 566 -1 304 269 172 27 chr3 4137517 4137703 -223386875 - L1ME4a LINE L1 -227 5894 5682 2699 40 0 0 chr3 4137711 4138013 -223386565 + AluYb8 SINE Alu 1 302 -16 1269 96 0 0 chr3 4138013 4138179 -223386399 + AluYa5 SINE Alu 133 298 -13 2079 154 0 0 chr3 4138205 4138504 -223386074 + AluSx SINE Alu 1 299 -13 726 254 11 0 chr3 4138764 4138941 -223385637 - MER5A DNA MER1_type -8 181 3 287 263 25 12 chr3 4139314 4139394 -223385184 + MLT1K LTR MaLR 477 557 -31 239 200 38 113 chr3 4140221 4140301 -223384277 - L2 LINE L2 -40 3273 3200 318 26 0 0 chr3 4140306 4140345 -223384233 + (GA)n Simple_repeat Simple_repeat 2 40 0 937 238 75 77 chr3 4140402 4140855 -223383723 + MER110A LTR ERV1 3 454 -14 459 0 0 0 chr3 4140973 4141024 -223383554 + (TATG)n Simple_repeat Simple_repeat 2 52 0 2162 99 3 11 chr3 4141027 4141310 -223383268 - AluSx SINE Alu -30 282 2 503 81 0 0 chr3 4141319 4141393 -223383185 - Alu SINE Alu -10 301 228 425 175 0 25 chr3 4141394 4141474 -223383104 + MER65A LTR ERV1 35 112 -333 960 211 10 10 chr3 4141621 4141825 -223382753 - AluSx SINE Alu -108 204 1 2485 89 2 63 chr3 4141827 4142286 -223382292 - MER4A LTR ERV1 -271 393 1 2078 121 28 0 chr3 4143417 4143706 -223380872 - AluSx SINE Alu -13 299 3 271 268 97 48 chr3 4143834 4144103 -223380475 - L1ME4a LINE L1 -73 6048 5767 24 32 0 0 chr3 4144344 4144375 -223380203 + AT_rich Low_complexity Low_complexity 1 31 0 1135 138 29 0 chr3 4144375 4144549 -223380029 - AluJb SINE Alu -13 299 121 1503 181 42 21 chr3 4144639 4144926 -223379652 - AluJo SINE Alu -19 293 1 262 180 67 90 chr3 4147095 4147184 -223377394 - L1MC5 LINE L1 -44 7917 7831 1694 189 7 3 chr3 4147206 4147508 -223377070 - AluJb SINE Alu -9 303 1 21 57 0 0 chr3 4147703 4147738 -223376840 + AT_rich Low_complexity Low_complexity 1 35 0 23 0 0 0 chr3 4147814 4147837 -223376741 + AT_rich Low_complexity Low_complexity 1 23 0 1796 158 0 55 chr3 4147838 4148168 -223376410 - AluJb SINE Alu 0 312 1 225 296 25 12 chr3 4148190 4148271 -223376307 - L1ME4a LINE L1 -463 5658 5577 1631 213 81 31 chr3 4148875 4149408 -223375170 - MLT1F1 LTR MaLR 0 567 2 2361 100 0 0 chr3 4149684 4149983 -223374595 - AluSg SINE Alu -11 299 1 2162 120 0 3 chr3 4150976 4151285 -223373293 - AluSx SINE Alu -4 308 1 354 23 0 0 chr3 4152356 4152399 -223372179 + (CA)n Simple_repeat Simple_repeat 1 43 0 965 160 209 13 chr3 4152402 4152627 -223371951 + L1MB3 LINE L1 5914 6182 -1 21 71 0 0 chr3 4152712 4152754 -223371824 + AT_rich Low_complexity Low_complexity 1 42 0 1476 186 13 68 chr3 4153329 4153636 -223370942 + AluJb SINE Alu 1 290 -22 476 264 21 7 chr3 4153969 4154109 -223370469 - MIR SINE MIR -48 214 73 1090 101 0 0 chr3 4154167 4154315 -223370263 - Tigger7 DNA MER2_type -1 2486 2339 344 171 100 0 chr3 4154334 4154404 -223370174 - Tigger7 DNA MER2_type -473 77 1 368 259 168 0 chr3 4154601 4154744 -223369834 + MIR3 SINE MIR 38 204 -4 1998 104 45 3 chr3 4155062 4155351 -223369227 + AluSx SINE Alu 1 301 -11 2300 105 0 0 chr3 4155362 4155657 -223368921 + AluSc SINE Alu 1 295 -14 1650 235 92 74 chr3 4156490 4157283 -223367295 + L1MC4 LINE L1 7235 8041 -1 1218 162 43 43 chr3 4157480 4157715 -223366863 - MER8 DNA MER2_type -1 238 4 2242 98 0 7 chr3 4157817 4158112 -223366466 - AluSx SINE Alu -18 294 2 1247 170 42 55 chr3 4158351 4158413 -223366165 + L1PA16 LINE L1 5875 5936 -230 2156 127 3 0 chr3 4158413 4158712 -223365866 + AluSx SINE Alu 1 300 -12 1247 170 42 55 chr3 4158712 4158938 -223365640 + L1PA16 LINE L1 5936 6159 -7 196 282 0 0 chr3 4159984 4160023 -223364555 + MIR SINE MIR 37 75 -133 1200 186 53 56 chr3 4160506 4160791 -223363787 + AluJo SINE Alu 6 289 -23 214 274 0 3 chr3 4161727 4161797 -223362781 - MIR SINE MIR -80 128 59 282 196 0 0 chr3 4161798 4161844 -223362734 - Alu SINE Alu -12 289 244 2503 90 3 0 chr3 4162089 4162400 -223362178 - AluSp SINE Alu 0 313 2 1183 152 11 11 chr3 4162400 4162583 -223361995 - AluJb SINE Alu -5 307 122 293 128 0 21 chr3 4162584 4162631 -223361947 + AluSp SINE Alu 117 162 -141 817 96 0 0 chr3 4162635 4162739 -223361839 - AluJb SINE Alu -202 110 7 622 315 17 9 chr3 4163089 4163321 -223361257 + MIR SINE MIR 12 245 -17 278 363 18 33 chr3 4163379 4163439 -223361139 + L1MDa LINE L1 49 108 -6432 1970 132 3 32 chr3 4163439 4163749 -223360829 + AluSx SINE Alu 1 301 -11 278 363 18 33 chr3 4163749 4163961 -223360617 + L1MDa LINE L1 108 317 -6223 239 327 18 30 chr3 4164512 4164680 -223359898 + L1MDa LINE L1 854 1019 -5511 1072 113 0 92 chr3 4164816 4165001 -223359577 + AluSx SINE Alu 1 168 -144 2119 118 3 37 chr3 4165006 4165329 -223359249 + AluSx SINE Alu 1 312 0 4816 156 35 41 chr3 4165332 4165519 -223359059 + L1M4c LINE L1 721 908 -5476 1968 154 0 0 chr3 4165519 4165812 -223358766 + AluSx SINE Alu 1 293 -19 4816 156 35 41 chr3 4165812 4166687 -223357891 + L1M4c LINE L1 908 1776 -4608 1680 127 0 80 chr3 4166687 4166986 -223357592 + AluSx SINE Alu 1 275 -37 870 143 63 11 chr3 4166988 4167163 -223357415 + L1MB3 LINE L1 5949 6132 -51 1390 134 5 9 chr3 4167168 4167384 -223357194 + AluSg/x SINE Alu 82 296 -16 2095 202 95 97 chr3 4167413 4168145 -223356433 + L1MDa LINE L1 1469 2201 -4339 2099 146 25 22 chr3 4168145 4168507 -223356071 - THE1B LTR MaLR -1 363 1 2095 202 95 97 chr3 4168507 4168941 -223355637 + L1MDa LINE L1 2201 2634 -3906 1583 187 4 4 chr3 4168941 4169209 -223355369 + AluJo SINE Alu 6 273 -39 2095 202 95 97 chr3 4169209 4169714 -223354864 + L1MDa LINE L1 2634 3139 -3401 1201 199 65 43 chr3 4169714 4169991 -223354587 + AluJb SINE Alu 3 285 -17 2095 202 95 97 chr3 4169991 4170272 -223354306 + L1MDa LINE L1 3139 3419 -3121 277 118 0 0 chr3 4170372 4170423 -223354155 + MER39B LTR ERV1 62 112 -541 583 340 20 8 chr3 4171127 4171377 -223353201 + HERVI LTR ERV1 718 970 -6815 5328 308 45 45 chr3 4171603 4172564 -223352014 + HERVI LTR ERV1 954 1914 -5871 2938 86 43 5 chr3 4172564 4172985 -223351593 + L1PA5 LINE L1 5717 6153 -1 5328 308 45 45 chr3 4172985 4176431 -223348147 + HERVI LTR ERV1 1914 5756 -2029 2179 304 39 43 chr3 4177323 4178551 -223346027 + HERVI LTR ERV1 6425 7647 -138 2290 136 5 35 chr3 4179458 4179833 -223344745 - THE1B LTR MaLR 0 364 1 685 83 0 0 chr3 4179929 4180025 -223344553 + AluY SINE Alu 208 303 -8 26 0 0 0 chr3 4180914 4180940 -223343638 + AT_rich Low_complexity Low_complexity 1 26 0 281 210 155 81 chr3 4181508 4181645 -223342933 - MIR SINE MIR -62 146 2 799 160 23 0 chr3 4182121 4182252 -223342326 + AluJo SINE Alu 2 135 -177 2155 115 3 10 chr3 4182270 4182584 -223341994 + AluSx SINE Alu 1 312 0 320 317 254 5 chr3 4182748 4182953 -223341625 - MIR SINE MIR -6 256 1 389 146 0 0 chr3 4183798 4183853 -223340725 + AluSg/x SINE Alu 194 248 -52 808 165 61 91 chr3 4183853 4183893 -223340685 + AluSg/x SINE Alu 83 123 -187 210 37 0 0 chr3 4183893 4183920 -223340658 + (TAA)n Simple_repeat Simple_repeat 3 29 0 1969 112 0 3 chr3 4183920 4184251 -223340327 + AluSx SINE Alu 1 330 0 2151 101 0 0 chr3 4184251 4184538 -223340040 + AluSg SINE Alu 1 287 -23 808 165 61 91 chr3 4184538 4184724 -223339854 + AluSg/x SINE Alu 120 305 -5 1891 139 0 3 chr3 4184859 4185153 -223339425 + AluSx SINE Alu 1 293 -19 1319 164 21 52 chr3 4186073 4186360 -223338218 - AluJb SINE Alu -30 282 5 335 328 156 16 chr3 4186887 4187015 -223337563 + L2 LINE L2 3126 3271 -1 189 0 0 0 chr3 4187297 4187318 -223337260 + (TTCA)n Simple_repeat Simple_repeat 1 21 0 276 256 61 12 chr3 4187319 4187401 -223337177 - L2 LINE L2 -18 3295 3210 1913 83 65 7 chr3 4187469 4187746 -223336832 + AluSx SINE Alu 1 293 -19 1502 181 13 24 chr3 4187834 4188132 -223336446 + AluJo SINE Alu 14 308 -4 2333 81 0 0 chr3 4188317 4188613 -223335965 + AluSx SINE Alu 1 296 -16 1754 106 124 4 chr3 4188803 4189078 -223335500 + AluSg SINE Alu 1 308 -2 1477 145 67 32 chr3 4189191 4189474 -223335104 + AluSx SINE Alu 1 293 -19 787 154 0 8 chr3 4189684 4189814 -223334764 + AluJ SINE Alu 1 129 -173 2065 140 0 0 chr3 4189845 4190152 -223334426 + AluSx SINE Alu 1 307 -5 420 188 0 59 chr3 4190183 4190284 -223334294 - AluJ/FLAM SINE Alu -216 96 2 859 184 0 36 chr3 4190302 4190470 -223334108 + AluJ SINE Alu 129 290 -22 1177 130 0 0 chr3 4190678 4190855 -223333723 + AluSq SINE Alu 133 309 -4 303 171 239 34 chr3 4190872 4190989 -223333589 + L1ME LINE L1 5538 5678 -443 662 134 0 25 chr3 4191207 4191326 -223333252 - AluSq/x SINE Alu -196 117 2 21 0 0 0 chr3 4191586 4191607 -223332971 + AT_rich Low_complexity Low_complexity 1 21 0 1692 157 7 20 chr3 4192534 4192834 -223331744 + AluSx SINE Alu 1 296 -16 382 296 53 59 chr3 4193533 4193702 -223330876 + MER5A DNA MER1_type 22 189 0 1682 150 10 20 chr3 4194012 4194145 -223330433 + AluJo SINE Alu 1 134 -178 2045 106 0 64 chr3 4194145 4194475 -223330103 + AluSg SINE Alu 1 309 -1 1682 150 10 20 chr3 4194475 4194634 -223329944 + AluJo SINE Alu 134 290 -22 22 0 0 0 chr3 4195436 4195458 -223329120 + AT_rich Low_complexity Low_complexity 1 22 0 427 193 23 23 chr3 4195570 4195658 -223328920 + L2 LINE L2 3221 3308 -5 1776 136 52 0 chr3 4195737 4196024 -223328554 + AluJb SINE Alu 1 302 -10 1217 111 0 0 chr3 4196114 4196285 -223328293 + AluSp SINE Alu 132 302 -11 187 111 0 0 chr3 4196845 4196872 -223327706 - L2 LINE L2 -19 3294 3268 224 339 58 35 chr3 4197161 4197239 -223327339 + MIR SINE MIR 88 163 -99 1939 121 0 7 chr3 4197239 4197520 -223327058 + AluSg SINE Alu 1 279 -31 224 339 58 35 chr3 4197520 4197612 -223326966 + MIR SINE MIR 163 262 0 1229 134 113 79 chr3 4197812 4198104 -223326474 + AluJo SINE Alu 1 302 0 1536 110 4 25 chr3 4198116 4198361 -223326217 + AluSq SINE Alu 67 306 -7 242 303 121 0 chr3 4199090 4199189 -223325389 - L2 LINE L2 -1 3271 3161 1211 158 63 60 chr3 4199605 4199890 -223324688 + AluJo SINE Alu 23 308 -4 677 159 0 90 chr3 4200369 4200403 -223324175 - MER94 DNA DNA -1 133 98 2091 110 3 13 chr3 4200403 4200702 -223323876 - AluSx SINE Alu -16 296 1 677 159 0 90 chr3 4200702 4200812 -223323766 - MER94 DNA DNA -36 98 2 2198 157 60 35 chr3 4200851 4201303 -223323275 + MLT1C LTR MaLR 5 467 0 2339 107 22 19 chr3 4201426 4201792 -223322786 - L1PA16 LINE L1 0 6166 5800 2067 118 10 0 chr3 4201793 4202089 -223322489 - AluSq SINE Alu -14 299 1 2132 129 0 0 chr3 4202662 4202973 -223321605 + AluSx SINE Alu 1 311 -1 1989 135 0 3 chr3 4203162 4203466 -223321112 + AluSq SINE Alu 1 303 -10 2050 119 14 0 chr3 4203470 4203764 -223320814 + AluSx SINE Alu 1 298 -14 1789 127 3 67 chr3 4204349 4204664 -223319914 + AluSp SINE Alu 1 295 -18 1989 130 13 0 chr3 4204719 4205018 -223319560 + AluSg SINE Alu 1 303 -7 2496 135 46 14 chr3 4205511 4205911 -223318667 - MER65A LTR ERV1 0 445 29 1905 126 0 0 chr3 4205911 4206182 -223318396 - AluSx SINE Alu -41 271 1 2496 135 46 14 chr3 4206182 4206212 -223318366 - MER65A LTR ERV1 -416 29 1 770 170 7 22 chr3 4206247 4206382 -223318196 - FLAM_C SINE Alu 0 133 1 213 227 0 30 chr3 4206460 4206526 -223318052 + GA-rich Low_complexity Low_complexity 4 67 0 343 263 32 0 chr3 4206536 4206631 -223317947 + MER97c DNA MER1_type? 27 124 -966 242 140 0 20 chr3 4206658 4206708 -223317870 + (TCC)n Simple_repeat Simple_repeat 1 49 0 269 361 28 24 chr3 4207498 4207711 -223316867 - AluJo SINE Alu -57 245 32 * 836 155 39 19 chr3 4207706 4207861 -223316717 - MLT1D LTR MaLR -19 486 329 240 188 277 0 chr3 4207927 4208028 -223316550 + MER77 LTR ERV1 144 272 -333 2339 152 6 0 chr3 4208028 4208364 -223316214 + MER1B DNA MER1_type 1 338 -1 180 0 0 0 chr3 4208372 4208392 -223316186 + (CAAT)n Simple_repeat Simple_repeat 1 20 0 730 292 142 14 chr3 4208393 4208674 -223315904 + MER77 LTR ERV1 278 594 -11 476 207 122 49 chr3 4208791 4208955 -223315623 + MIR SINE MIR 70 245 -17 402 216 43 126 chr3 4208955 4209105 -223315473 + MER106A DNA MER1_type 1 123 -113 691 228 0 0 chr3 4209105 4209228 -223315350 + FLAM_A SINE Alu 1 123 -10 402 216 43 126 chr3 4209228 4209332 -223315246 + MER106A DNA MER1_type 123 234 -2 798 267 89 71 chr3 4210370 4210435 -223314143 - MLT1K LTR MaLR -63 525 463 3517 128 4 28 chr3 4210435 4210975 -223313603 - MER1A DNA MER1_type 0 527 1 798 267 89 71 chr3 4210975 4211302 -223313276 - MLT1K LTR MaLR -125 463 126 261 225 0 0 chr3 4211520 4211609 -223312969 + (TTTA)n Simple_repeat Simple_repeat 2 90 0 292 225 113 0 chr3 4211624 4211695 -223312883 + L2 LINE L2 3194 3272 0 2654 123 31 2 chr3 4211712 4212128 -223312450 - MSTA LTR MaLR 0 428 1 520 171 202 0 chr3 4212368 4212497 -223312081 - MER5A DNA MER1_type -29 160 6 479 233 133 13 chr3 4213017 4213167 -223311411 - MIR SINE MIR -74 188 21 911 176 23 0 chr3 4213621 4213797 -223310781 - FRAM SINE Alu -1 175 1 2087 107 7 3 chr3 4213988 4214279 -223310299 + AluSq SINE Alu 1 292 -21 1211 140 45 0 chr3 4214427 4214627 -223309951 - L1MA5A LINE L1 -4 6293 6085 2634 80 33 145 chr3 4214902 4215161 -223309417 + MER39B LTR ERV1 1 287 -366 930 113 0 0 chr3 4215161 4215285 -223309293 + FLAM_C SINE Alu 1 124 -9 2634 80 33 145 chr3 4215285 4215330 -223309248 + MER39B LTR ERV1 287 335 -318 773 191 8 0 chr3 4215330 4215487 -223309091 + FLAM_C SINE Alu 1 158 0 2634 80 33 145 chr3 4215487 4215690 -223308888 + MER39B LTR ERV1 335 453 -200 801 250 35 0 chr3 4215685 4215885 -223308693 + Charlie2a DNA MER1_type 1520 1726 -1136 * 2140 153 103 7 chr3 4215885 4216310 -223308268 + Tigger2 DNA MER2_type 1 466 -2252 749 221 0 0 chr3 4216316 4216461 -223308117 + AluSg/x SINE Alu 135 279 -31 321 100 0 0 chr3 4216463 4216513 -223308065 + (CA)n Simple_repeat Simple_repeat 2 51 0 2335 124 48 3 chr3 4216519 4216890 -223307688 + Tigger2 DNA MER2_type 2331 2718 0 2018 213 164 41 chr3 4216893 4217302 -223307276 + Charlie2a DNA MER1_type 1727 2084 -778 2215 115 0 3 chr3 4217302 4217614 -223306964 + AluJo SINE Alu 1 311 -1 2018 213 164 41 chr3 4217614 4218087 -223306491 + Charlie2a DNA MER1_type 2084 2718 -144 3106 123 115 17 chr3 4218665 4219254 -223305324 + LTR24C LTR ERV1 2 466 -1 273 109 0 0 chr3 4219434 4219480 -223305098 + (CA)n Simple_repeat Simple_repeat 1 46 0 330 296 111 19 chr3 4219745 4219907 -223304671 - MIR SINE MIR -67 195 19 690 210 50 22 chr3 4219990 4220171 -223304407 - MIR SINE MIR -49 213 28 2111 109 0 3 chr3 4220495 4220799 -223303779 + AluSx SINE Alu 4 306 -6 21 0 0 0 chr3 4222467 4222488 -223302090 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr3 4222958 4222979 -223301599 + AT_rich Low_complexity Low_complexity 1 21 0 25 0 0 0 chr3 4223566 4223591 -223300987 + AT_rich Low_complexity Low_complexity 1 25 0 568 229 41 0 chr3 4224901 4225023 -223299555 + FLAM_A SINE Alu 1 127 -6 23 0 0 0 chr3 4225023 4225046 -223299532 + AT_rich Low_complexity Low_complexity 1 23 0 857 200 62 19 chr3 4225580 4225790 -223298788 - MER20 DNA MER1_type 0 219 1 260 275 142 8 chr3 4226262 4226382 -223298196 + L2 LINE L2 2923 3058 -214 620 215 135 35 chr3 4226586 4226786 -223297792 + MIR SINE MIR 43 262 0 235 139 0 0 chr3 4227335 4227371 -223297207 + LTR33 LTR ERVL 3 38 -483 230 299 21 21 chr3 4227638 4227735 -223296843 + LTR33 LTR ERVL 411 507 -14 224 273 28 125 chr3 4228165 4228341 -223296237 + MER5B DNA MER1_type 3 161 -17 272 272 62 0 chr3 4228398 4228479 -223296099 + L2 LINE L2 3150 3235 -37 197 275 114 30 chr3 4228712 4228843 -223295735 - MIR3 SINE MIR -66 142 1 195 229 14 71 chr3 4229150 4229220 -223295358 - MER5A DNA MER1_type -36 153 88 358 280 42 52 chr3 4229442 4229635 -223294943 + MIR3 SINE MIR 3 193 -15 291 71 0 0 chr3 4229643 4229685 -223294893 + (CA)n Simple_repeat Simple_repeat 2 43 0 266 307 89 9 chr3 4230630 4230855 -223293723 + L1ME4a LINE L1 5879 6121 0 438 333 0 0 chr3 4333143 4333254 -223191324 + L2 LINE L2 3157 3267 -5 23 0 0 0 chr3 4333262 4333285 -223191293 + AT_rich Low_complexity Low_complexity 1 23 0 2734 103 8 5 chr3 4333344 4333731 -223190847 + L1PB1 LINE L1 5763 6150 -1 298 347 200 7 chr3 4334628 4334778 -223189800 - MER5A DNA MER1_type -10 179 1 598 172 0 0 chr3 4334913 4335000 -223189578 - AluJ/FLAM SINE Alu -224 88 2 3029 249 57 23 chr3 4335103 4336133 -223188445 - L1M4 LINE L1 -1790 4356 3292 308 64 21 0 chr3 4336162 4336209 -223188369 + (TC)n Simple_repeat Simple_repeat 1 48 0 1006 213 189 7 chr3 4336209 4336285 -223188293 - MER2 DNA MER2_type 0 344 283 2314 92 0 0 chr3 4336285 4336580 -223187998 + AluSx SINE Alu 5 299 -13 1006 213 189 7 chr3 4336580 4336794 -223187784 - MER2 DNA MER2_type -61 283 1 1828 97 37 23 chr3 4337352 4337652 -223186926 + AluSq SINE Alu 1 304 -9 530 172 83 6 chr3 4339259 4339416 -223185162 - PABL_B LTR ERV1 -9 658 490 466 269 304 0 chr3 4340222 4340393 -223184185 + MIR SINE MIR 39 261 -1 416 253 111 25 chr3 4340512 4340832 -223183746 + MLT1K LTR MaLR 158 553 -35 22 0 0 0 chr3 4340954 4340976 -223183602 + AT_rich Low_complexity Low_complexity 1 22 0 396 261 17 25 chr3 4341595 4341714 -223182864 + MLT1K LTR MaLR 132 249 -339 216 0 0 0 chr3 4341726 4341750 -223182828 + (T)n Simple_repeat Simple_repeat 1 24 0 270 265 43 13 chr3 4342010 4342114 -223182464 + L1MCa LINE L1 1 84 -5961 921 274 29 29 chr3 4342122 4342432 -223182146 + L1MCa LINE L1 277 586 -5459 555 190 76 63 chr3 4342491 4342649 -223181929 + L1MCa LINE L1 555 714 -5331 935 192 135 0 chr3 4342755 4342948 -223181630 - MSTA LTR MaLR -209 219 1 245 167 42 0 chr3 4342949 4342997 -223181581 + L1ME1 LINE L1 6111 6160 -6 1738 139 58 41 chr3 4343463 4343758 -223180820 + AluSx SINE Alu 1 300 -12 180 77 0 0 chr3 4344097 4344123 -223180455 + (TTCA)n Simple_repeat Simple_repeat 1 26 0 546 278 131 0 chr3 4344198 4344374 -223180204 - MIR SINE MIR -32 230 32 670 178 8 0 chr3 4344714 4344832 -223179746 - MLT1D LTR MaLR 0 505 387 2266 104 0 0 chr3 4345041 4345339 -223179239 - AluSx SINE Alu -3 309 12 1501 195 3 36 chr3 4345562 4345870 -223178708 + AluJo SINE Alu 1 298 -14 858 168 0 0 chr3 4345914 4346039 -223178539 + AluJb SINE Alu 1 125 -187 438 211 0 0 chr3 4346853 4346962 -223177616 + G-rich Low_complexity Low_complexity 1 109 0 222 278 19 0 chr3 4347300 4347354 -223177224 + L2 LINE L2 3237 3291 -22 266 316 121 17 chr3 4347383 4347614 -223176964 + MIR SINE MIR 8 262 0 1810 108 0 4 chr3 4347646 4347886 -223176692 - AluSc SINE Alu -70 239 1 293 95 0 0 chr3 4347910 4347952 -223176626 - L1MCb LINE L1 -4195 2369 2328 696 202 77 34 chr3 4347955 4348294 -223176284 - L1MB3 LINE L1 -3 6460 2049 1684 231 30 36 chr3 4348304 4348806 -223175772 - L1MA9 LINE L1 -32 6280 5782 283 136 0 0 chr3 4348858 4348902 -223175676 + L1M4 LINE L1 5731 5774 -400 * 1077 172 0 0 chr3 4348901 4349087 -223175491 - L1MA9 LINE L1 -552 5782 5597 * 3173 214 82 24 chr3 4349084 4350193 -223174385 - L1MCb LINE L1 -4508 2237 851 281 87 0 22 chr3 4350195 4350241 -223174337 + (TTTC)n Simple_repeat Simple_repeat 3 47 0 1226 90 6 0 chr3 4350254 4350432 -223174146 + (TTC)n Simple_repeat Simple_repeat 2 180 0 2232 115 0 0 chr3 4350946 4351234 -223173344 - AluSx SINE Alu -24 288 1 192 258 45 15 chr3 4352146 4352212 -223172366 - L2 LINE L2 -1 3312 3245 2685 164 7 20 chr3 4352695 4353134 -223171444 - Tigger2a DNA MER2_type 0 434 2 222 37 0 0 chr3 4353146 4353173 -223171405 + (TA)n Simple_repeat Simple_repeat 2 28 0 421 313 85 64 chr3 4353276 4353711 -223170867 + MLT1J1 LTR MaLR 3 446 0 244 361 189 19 chr3 4353907 4354273 -223170305 - L2 LINE L2 -344 2970 2543 1117 204 75 45 chr3 4354307 4354640 -223169938 + MER2 DNA MER2_type 1 343 -1 1812 139 41 24 chr3 4356614 4356908 -223167670 + THE1B LTR MaLR 1 299 -65 2274 106 7 0 chr3 4356908 4357200 -223167378 - AluSx SINE Alu -18 294 1 274 349 88 17 chr3 4358676 4358914 -223165664 + L2 LINE L2 1865 2119 -1195 588 245 86 7 chr3 4359121 4359272 -223165306 - MIR SINE MIR -71 191 29 3805 191 43 32 chr3 4359479 4360061 -223164517 + L1MB8 LINE L1 5309 5906 -272 2246 167 69 100 chr3 4360061 4360744 -223163834 - MER4A LTR ERV1 0 664 3 3805 191 43 32 chr3 4360744 4361016 -223163562 + L1MB8 LINE L1 5906 6173 -5 678 300 65 67 chr3 4361435 4361882 -223162696 - MLT1K LTR MaLR 0 588 143 260 324 0 0 chr3 4362098 4362172 -223162406 + MIR3 SINE MIR 112 185 -23 2289 112 0 0 chr3 4362328 4362631 -223161947 + AluSx SINE Alu 1 303 -9 23 0 0 0 chr3 4362659 4362682 -223161896 + AT_rich Low_complexity Low_complexity 1 23 0 1002 146 189 5 chr3 4362845 4363030 -223161548 + MER20 DNA MER1_type 1 219 0 203 79 26 0 chr3 4363873 4363911 -223160667 + (CAAAA)n Simple_repeat Simple_repeat 2 40 0 370 301 153 14 chr3 4364908 4365124 -223159454 + MIR SINE MIR 13 258 -4 186 293 35 0 chr3 4365835 4365893 -223158685 - MIR3 SINE MIR -37 171 112 222 338 13 0 chr3 4366621 4366698 -223157880 + MIR SINE MIR 68 145 -63 944 147 7 0 chr3 4367754 4367897 -223156681 - AluJb SINE Alu -168 144 1 1721 170 10 10 chr3 4368831 4369131 -223155447 + AluJo SINE Alu 1 300 -12 1280 177 42 100 chr3 4369146 4369456 -223155122 + AluJo SINE Alu 1 292 -20 189 288 225 0 chr3 4369528 4369608 -223154970 - L3 LINE CR1 -292 1285 1188 2433 121 22 25 chr3 4369700 4370065 -223154513 + THE1B LTR MaLR 1 364 0 621 317 176 32 chr3 4370068 4370409 -223154169 - L3 LINE CR1 -437 1140 751 345 232 72 65 chr3 4371515 4371653 -223152925 + MER103 DNA DNA 10 148 -18 272 375 13 33 chr3 4371709 4371861 -223152717 - MIR3 SINE MIR -39 169 21 542 239 43 111 chr3 4372164 4372255 -223152323 - Charlie8 DNA MER1_type -122 219 123 2145 109 0 50 chr3 4372255 4372576 -223152002 + AluSx SINE Alu 5 309 -3 542 239 43 111 chr3 4372576 4372718 -223151860 - Charlie8 DNA MER1_type -218 123 2 1121 265 70 26 chr3 4373214 4373779 -223150799 + L2 LINE L2 2570 3154 -159 21 36 0 0 chr3 4373812 4373840 -223150738 + AT_rich Low_complexity Low_complexity 1 28 0 194 298 0 0 chr3 4373917 4373974 -223150604 + L2 LINE L2 3255 3311 -2 337 195 26 26 chr3 4373989 4374066 -223150512 + MLT1L LTR MaLR 3 79 -536 449 301 65 37 chr3 4374591 4374837 -223149741 + Charlie8 DNA MER1_type 5 257 -2160 468 0 0 0 chr3 4374851 4374903 -223149675 + (TG)n Simple_repeat Simple_repeat 2 53 0 209 296 59 89 chr3 4376084 4376219 -223148359 + MIR SINE MIR 17 147 -61 742 249 73 96 chr3 4376228 4376630 -223147948 - MLT1I LTR MaLR -7 402 1 201 237 0 0 chr3 4376675 4376734 -223147844 + (TA)n Simple_repeat Simple_repeat 2 60 0 294 290 30 53 chr3 4377462 4377593 -223146985 - L2 LINE L2 -4 3309 3182 329 232 40 24 chr3 4378125 4378250 -223146328 + L1ME LINE L1 5630 5756 -365 307 293 75 34 chr3 4378816 4378963 -223145615 - LTR47A-int LTR ERVL -5176 167 15 1590 142 47 4 chr3 4378977 4378995 -223145583 - LTR47A LTR ERVL 0 452 436 1953 169 156 5 chr3 4378995 4379367 -223145211 + MSTA LTR MaLR 1 428 0 1590 142 47 4 chr3 4379367 4379733 -223144845 - LTR47A LTR ERVL -16 436 1 577 277 141 5 chr3 4379749 4379955 -223144623 + MIR SINE MIR 23 256 -6 28 0 0 0 chr3 4380471 4380499 -223144079 + AT_rich Low_complexity Low_complexity 1 28 0 1988 145 0 16 chr3 4380499 4380802 -223143776 + AluSx SINE Alu 1 298 -14 220 286 48 24 chr3 4380824 4380908 -223143670 - MIR SINE MIR -22 240 155 1335 215 87 36 chr3 4381139 4381225 -223143353 - MER113 DNA MER1_type? -1 520 440 4294 139 67 10 chr3 4381225 4381913 -223142665 - LTR8A LTR ERV1 0 727 1 1335 215 87 36 chr3 4381913 4382319 -223142259 - MER113 DNA MER1_type? -81 440 3 798 188 17 104 chr3 4382440 4382680 -223141898 + MER20 DNA MER1_type 1 219 0 27 49 0 0 chr3 4383098 4383139 -223141439 + AT_rich Low_complexity Low_complexity 1 41 0 1815 174 7 0 chr3 4383139 4383438 -223141140 + AluJb SINE Alu 1 301 -11 1071 103 0 7 chr3 4384071 4384217 -223140361 + AluSg/x SINE Alu 135 279 -30 415 253 114 32 chr3 4384612 4384770 -223139808 + MIR3 SINE MIR 38 208 0 3242 138 14 68 chr3 4384936 4385137 -223139441 + LTR26B LTR ERV1 4 214 -317 1604 174 19 47 chr3 4385137 4385454 -223139124 + AluJb SINE Alu 1 308 -4 3242 138 14 68 chr3 4385454 4385810 -223138768 + LTR26B LTR ERV1 214 531 0 817 258 33 16 chr3 4386111 4386293 -223138285 - MER5A DNA MER1_type -4 185 1 1154 164 116 58 chr3 4386378 4386689 -223137889 + MLT1D LTR MaLR 12 340 -165 261 119 48 0 chr3 4386665 4386707 -223137871 - MLT1D LTR MaLR -154 351 308 * 580 294 99 14 chr3 4387536 4387757 -223136821 - MIR SINE MIR -5 257 18 2426 96 0 0 chr3 4387932 4388244 -223136334 - AluSx SINE Alu 0 312 1 993 215 45 0 chr3 4388765 4388965 -223135613 - MER3 DNA MER1_type 0 209 1 311 301 68 20 chr3 4389211 4389357 -223135221 - MIR SINE MIR -61 201 49 337 258 13 0 chr3 4389358 4389445 -223135133 - MIR SINE MIR -92 116 40 442 306 25 13 chr3 4389626 4389783 -223134795 - MIR SINE MIR 0 262 104 4812 152 20 9 chr3 4390837 4391641 -223132937 + L1MC1 LINE L1 5509 6321 -12 360 364 23 6 chr3 4392152 4392328 -223132250 + MIR3 SINE MIR 17 195 -13 1889 197 16 101 chr3 4392420 4392967 -223131611 + MLT1D LTR MaLR 3 503 -2 220 324 14 0 chr3 4393147 4393221 -223131357 + (TA)n Simple_repeat Simple_repeat 2 76 0 186 283 170 28 chr3 4393466 4393572 -223131006 - MIR3 SINE MIR -4 204 84 327 274 183 7 chr3 4393948 4394101 -223130477 - MIR3 SINE MIR -14 194 15 227 291 0 0 chr3 4395008 4395063 -223129515 - MIR3 SINE MIR 0 208 154 433 256 53 0 chr3 4395065 4395198 -223129380 + MER117 DNA MER1_type 2 141 -56 198 208 260 39 chr3 4395254 4395331 -223129247 - MIR3 SINE MIR -52 156 63 206 373 15 0 chr3 4395700 4395767 -223128811 - L2 LINE L2 -7 3265 3198 2214 124 3 0 chr3 4395934 4396241 -223128337 + AluSq SINE Alu 1 308 -5 1215 260 59 52 chr3 4396331 4396792 -223127786 - L1ME3A LINE L1 -1 6169 5706 457 78 16 0 chr3 4396814 4396878 -223127700 - MER41A LTR ERV1 -90 464 400 1108 287 89 2 chr3 4396878 4397272 -223127306 - L1ME3A LINE L1 -452 5718 5291 842 228 216 8 chr3 4397349 4397827 -223126751 - LTR50 LTR ERVL 0 795 124 1373 179 115 86 chr3 4397969 4398486 -223126092 - LTR36 LTR ERV1 0 611 1 643 187 66 30 chr3 4398504 4398691 -223125887 - MIR SINE MIR -21 241 47 1182 199 17 39 chr3 4399598 4399829 -223124749 - AluJo SINE Alu -86 226 1 819 207 92 6 chr3 4399829 4400003 -223124575 - MLT1D LTR MaLR -313 192 4 22 35 0 0 chr3 4401583 4401612 -223122966 + AT_rich Low_complexity Low_complexity 1 29 0 278 296 61 17 chr3 4402090 4402205 -223122373 + MIR SINE MIR 137 256 -6 31 76 0 0 chr3 4402557 4402623 -223121955 + AT_rich Low_complexity Low_complexity 1 66 0 459 63 0 0 chr3 4402873 4402936 -223121642 + (TG)n Simple_repeat Simple_repeat 2 64 0 348 297 10 10 chr3 4402936 4403037 -223121541 - LTR67 LTR ERVL -9 548 448 234 222 139 28 chr3 4403311 4403419 -223121159 - MER113 DNA MER1_type? -401 120 1 1185 254 81 47 chr3 4404101 4404546 -223120032 - MLT1D LTR MaLR 0 505 46 1679 184 62 42 chr3 4404548 4404729 -223119849 - MLT2D LTR ERVL -3 411 235 2775 195 22 68 chr3 4404729 4405371 -223119207 + LTR9 LTR ERV1 1 612 0 1679 184 62 42 chr3 4405371 4405481 -223119097 - MLT2D LTR ERVL -179 235 129 2393 60 0 13 chr3 4405481 4405780 -223118798 + AluY SINE Alu 1 295 -16 1679 184 62 42 chr3 4405780 4405890 -223118688 - MLT2D LTR ERVL -285 129 1 237 143 24 24 chr3 4405898 4405940 -223118638 - MLT1D LTR MaLR -463 42 1 786 216 32 42 chr3 4405957 4406147 -223118431 - MIR SINE MIR -38 224 37 238 329 0 37 chr3 4406400 4406482 -223118096 - L2 LINE L2 -2 3270 3192 2102 86 52 0 chr3 4407118 4407385 -223117193 - AluSc SINE Alu -28 281 1 4187 118 24 5 chr3 4408080 4408671 -223115907 - LTR43 LTR ERV1 0 602 1 302 291 122 17 chr3 4408742 4408914 -223115664 + MIR SINE MIR 73 262 0 1714 174 98 113 chr3 4409004 4409302 -223115276 - MLT1D LTR MaLR 0 505 217 3621 158 6 2 chr3 4409302 4409827 -223114751 - MER1A DNA MER1_type 0 527 1 1714 174 98 113 chr3 4409827 4410041 -223114537 - MLT1D LTR MaLR -288 217 1 277 209 132 62 chr3 4410309 4410438 -223114140 - MLT1J2 LTR MaLR -310 140 3 2338 148 133 2 chr3 4411845 4412245 -223112333 - LTR47A LTR ERVL 0 452 1 4812 146 51 51 chr3 4412257 4413738 -223110840 - MER21-int LTR ERV1 -258 5840 4411 394 36 18 18 chr3 4413739 4413794 -223110784 - MLT2A1 LTR ERVL 0 453 399 261 0 0 0 chr3 4413798 4413827 -223110751 + (TG)n Simple_repeat Simple_repeat 2 30 0 2202 64 37 7 chr3 4413847 4414142 -223110436 - MLT2A1 LTR ERVL -140 304 1 1768 220 19 6 chr3 4414142 4414505 -223110073 - MER21-int LTR ERV1 -2026 2165 1798 243 0 0 0 chr3 4414621 4414648 -223109930 + (TA)n Simple_repeat Simple_repeat 2 28 0 * 252 0 0 0 chr3 4414647 4414675 -223109903 + (CA)n Simple_repeat Simple_repeat 2 29 0 21 0 0 0 chr3 4415996 4416017 -223108561 + AT_rich Low_complexity Low_complexity 1 21 0 690 297 72 43 chr3 4416501 4416941 -223107637 + Charlie8 DNA MER1_type 1 440 -1977 422 16 0 109 chr3 4417034 4417098 -223107480 - MLT2B1 LTR ERVL 0 520 464 213 175 0 0 chr3 4417101 4417141 -223107437 + (CATA)n Simple_repeat Simple_repeat 4 43 0 276 170 0 130 chr3 4417141 4417241 -223107337 - L1MC4 LINE L1 -1339 6703 6617 273 196 21 93 chr3 4417155 4417252 -223107326 + L1MC4 LINE L1 6614 6703 -1339 * 2249 185 41 30 chr3 4417291 4417755 -223106823 - MLT2B1 LTR ERVL -51 469 1 407 300 110 11 chr3 4419119 4419320 -223105258 + MIR SINE MIR 19 237 -25 747 290 136 18 chr3 4420638 4421079 -223103499 - L2 LINE L2 0 3313 2821 2055 109 35 109 chr3 4421088 4421493 -223103085 + THE1C LTR MaLR 1 375 0 349 289 47 57 chr3 4421493 4421704 -223102874 + MLT1I LTR MaLR 175 383 -26 439 239 92 23 chr3 4422043 4422173 -223102405 - MLT1J2 LTR MaLR -275 175 37 193 276 0 52 chr3 4422344 4422402 -223102176 + MIR3 SINE MIR 8 62 -146 4843 171 30 36 chr3 4422512 4423898 -223100680 + L1MB3 LINE L1 4810 6181 -2 400 154 0 0 chr3 4425422 4425487 -223099091 - THE1B LTR MaLR 0 364 300 1103 146 5 22 chr3 4425491 4425676 -223098902 + AluSx SINE Alu 1 182 -130 6976 19 1 0 chr3 4425776 4426621 -223097957 + L1HS LINE L1 5310 6155 0 226 229 0 0 chr3 4426623 4426684 -223097894 + A-rich Low_complexity Low_complexity 1 61 0 1892 146 0 20 chr3 4427196 4427498 -223097080 + AluSx SINE Alu 1 296 -16 188 235 0 0 chr3 4427498 4427532 -223097046 - MIR3 SINE MIR -24 184 151 1997 115 81 32 chr3 4427592 4427939 -223096639 + THE1B LTR MaLR 1 364 0 4969 62 1 3 chr3 4427939 4428597 -223095981 + THE1B-int LTR MaLR 1 657 -923 1337 155 4 52 chr3 4428597 4428849 -223095729 + THE1B LTR MaLR 125 364 0 304 264 110 110 chr3 4428850 4429077 -223095501 - MIR SINE MIR -32 230 4 458 243 87 28 chr3 4429205 4429365 -223095213 - MIR3 SINE MIR -48 160 20 1281 211 0 76 chr3 4429566 4429774 -223094804 + AluJo SINE Alu 1 180 -132 1993 173 12 6 chr3 4429774 4430115 -223094463 + MER61A LTR ERV1 1 343 0 1281 211 0 76 chr3 4430115 4430209 -223094369 + AluJo SINE Alu 180 280 -32 30 0 0 0 chr3 4430209 4430239 -223094339 + AT_rich Low_complexity Low_complexity 1 30 0 403 296 23 109 chr3 4430951 4431208 -223093370 - MIR SINE MIR -9 253 19 249 291 0 25 chr3 4431379 4431458 -223093120 - MIR3 SINE MIR 0 208 132 253 229 148 0 chr3 4431461 4431522 -223093056 - L2 LINE L2 -2 3270 3201 321 267 11 7 chr3 4432369 4432490 -223092088 - LTR43 LTR ERV1 -207 472 223 352 262 69 48 chr3 4432784 4432929 -223091649 + MLT1K LTR MaLR 274 421 -167 671 305 75 25 chr3 4433141 4433663 -223090915 + L1ME4a LINE L1 5350 5897 -224 1445 258 11 8 chr3 4433850 4434206 -223090372 + MLT1A2 LTR MaLR 4 360 -14 296 183 42 0 chr3 4434632 4434703 -223089875 + MER116 DNA Mariner 1 74 -6 2067 144 0 0 chr3 4436440 4436784 -223087794 - AluSx SINE Alu 0 344 1 1460 208 109 43 chr3 4437657 4438163 -223086415 - MER90 LTR ERV1 -6 608 70 2125 141 13 0 chr3 4438516 4438822 -223085756 - AluJo SINE Alu -2 310 1 212 292 79 22 chr3 4438953 4439042 -223085536 + MIR3 SINE MIR 90 183 -25 1643 249 190 30 chr3 4439562 4440389 -223084189 - HAL1 LINE L1 -209 2298 1340 383 306 89 0 chr3 4440393 4440674 -223083904 - HAL1 LINE L1 -1218 1289 984 432 288 113 19 chr3 4440860 4441072 -223083506 - HAL1 LINE L1 -1842 665 434 206 342 57 19 chr3 4441414 4441572 -223083006 + L2 LINE L2 2917 3080 -192 1877 154 3 13 chr3 4441589 4441900 -223082678 - AluJb SINE Alu -4 308 1 2232 78 35 0 chr3 4442672 4442955 -223081623 + AluY SINE Alu 1 293 -18 491 221 302 0 chr3 4442957 4443129 -223081449 + MIR SINE MIR 29 252 -10 220 214 18 18 chr3 4443173 4443229 -223081349 + (CA)n Simple_repeat Simple_repeat 1 56 0 427 315 34 0 chr3 4443276 4443422 -223081156 - MER117 DNA MER1_type -36 161 11 388 352 49 6 chr3 4443724 4443886 -223080692 - MIR SINE MIR -13 249 81 714 254 215 0 chr3 4444154 4444359 -223080219 - MIR SINE MIR -8 254 6 462 306 0 0 chr3 4445078 4445189 -223079389 + MER81 DNA DNA 4 114 0 233 274 140 18 chr3 4445361 4445467 -223079111 - L1MC/D LINE L1 -2273 5535 5401 1743 149 72 0 chr3 4445467 4445743 -223078835 + AluSx SINE Alu 1 296 -16 233 274 140 18 chr3 4445743 4445800 -223078778 - L1MC/D LINE L1 -2407 5401 5352 261 376 64 0 chr3 4446867 4446976 -223077602 - L2 LINE L2 0 3313 3198 2430 69 3 0 chr3 4447094 4447398 -223077180 + AluY SINE Alu 1 305 -6 258 282 0 113 chr3 4448067 4448191 -223076387 + MIR3 SINE MIR 87 196 -12 428 255 135 20 chr3 4448701 4448901 -223075677 + MIR SINE MIR 31 253 -9 477 40 40 0 chr3 4450115 4450191 -223074387 + (TCTA)n Simple_repeat Simple_repeat 3 81 0 1743 204 67 12 chr3 4450199 4450776 -223073802 - L1ME1 LINE L1 -7 6159 5517 975 255 87 19 chr3 4450782 4451150 -223073428 - MLT1D LTR MaLR 0 505 113 1182 151 58 92 chr3 4451162 4451496 -223073082 + AluJb SINE Alu 1 324 0 475 169 24 0 chr3 4451539 4451622 -223072956 - MLT1D LTR MaLR -417 88 4 1579 189 70 39 chr3 4451633 4451803 -223072775 - L1ME1 LINE L1 -662 5504 5341 2208 124 7 0 chr3 4451803 4452110 -223072468 - AluSx SINE Alu -3 309 1 1579 189 70 39 chr3 4452110 4452518 -223072060 - L1ME1 LINE L1 -825 5341 4902 1936 164 0 3 chr3 4453744 4454043 -223070535 - AluJo SINE Alu -14 298 1 232 332 158 21 chr3 4455111 4455301 -223069277 + L3 LINE CR1 1009 1224 -353 181 152 61 0 chr3 4455358 4455391 -223069187 + MER5B DNA MER1_type 11 45 -133 722 209 120 0 chr3 4455566 4455724 -223068854 + MER45A DNA AcHobo 2 178 0 2276 94 3 0 chr3 4457303 4457601 -223066977 - AluSx SINE Alu -13 299 1 581 183 0 48 chr3 4458193 4458319 -223066259 - Tigger2 DNA MER2_type 0 2718 2599 569 240 0 0 chr3 4458316 4458437 -223066141 + MER45A DNA AcHobo 57 177 -1 * 1774 117 78 3 chr3 4458645 4458952 -223065626 - Tigger2 DNA MER2_type -116 2602 2273 266 254 30 0 chr3 4458942 4459009 -223065569 - Tigger2 DNA MER2_type -2649 69 1 * 348 325 42 6 chr3 4459268 4459434 -223065144 + MIR3 SINE MIR 30 201 -7 256 269 30 0 chr3 4459941 4460008 -223064570 + Tigger2 DNA MER2_type 1 69 -2649 * 336 139 241 13 chr3 4459998 4460077 -223064501 + Tigger2 DNA MER2_type 2273 2369 -349 336 286 30 75 chr3 4460653 4460786 -223063792 + L2 LINE L2 2943 3069 -203 400 353 0 0 chr3 4461100 4461222 -223063356 + MIR3 SINE MIR 72 193 -15 3912 122 29 8 chr3 4461641 4462262 -223062316 + MER41B LTR ERV1 2 635 0 632 288 101 5 chr3 4462264 4462483 -223062095 - MIR SINE MIR 0 262 23 3447 210 51 36 chr3 4463051 4464140 -223060438 + L1MC4a LINE L1 6700 7805 -3 641 190 29 36 chr3 4464158 4464295 -223060283 - AluJo SINE Alu -176 136 1 1745 166 3 19 chr3 4464410 4464723 -223059855 + AluJb SINE Alu 5 312 0 230 245 0 0 chr3 4464845 4464898 -223059680 - L2 LINE L2 -4 3309 3257 1915 106 19 0 chr3 4465808 4466064 -223058514 + AluSq SINE Alu 49 309 -4 1264 78 21 21 chr3 4466064 4466255 -223058323 - PABL_A LTR ERV1 -469 191 1 23 0 0 0 chr3 4466726 4466749 -223057829 + AT_rich Low_complexity Low_complexity 1 23 0 583 99 148 10 chr3 4466754 4466855 -223057723 - FLAM_C SINE Alu -24 119 5 860 131 77 0 chr3 4466904 4467034 -223057544 + FRAM SINE Alu 20 159 -17 293 367 17 0 chr3 4467223 4467343 -223057235 - MIR SINE MIR -133 129 8 534 236 48 36 chr3 4467631 4467796 -223056782 + MER5B DNA MER1_type 11 177 -1 688 129 103 189 chr3 4468023 4468238 -223056340 - MER33 DNA MER1_type -2265 320 145 1734 167 20 7 chr3 4468238 4468532 -223056046 + AluJb SINE Alu 1 298 -14 688 129 103 189 chr3 4468532 4468666 -223055912 - MER33 DNA MER1_type -2440 145 1 3275 70 10 0 chr3 4468897 4469381 -223055197 + L1P LINE L1 4915 5403 -743 190 379 0 0 chr3 4469527 4469593 -223054985 - MIR SINE MIR -72 136 71 276 163 0 0 chr3 4469593 4469642 -223054936 + L1MC3 LINE L1 7045 7093 -692 258 262 24 12 chr3 4469646 4469730 -223054848 + MLT1F1 LTR MaLR 40 124 -443 1905 187 74 71 chr3 4469731 4470326 -223054252 + L1MC3 LINE L1 7189 7785 0 2223 112 0 13 chr3 4471113 4471416 -223053162 - AluSx SINE Alu -13 299 1 2087 121 0 0 chr3 4472417 4472722 -223051856 + AluSx SINE Alu 1 305 0 527 281 67 12 chr3 4473136 4473300 -223051278 - MER5B DNA MER1_type 0 178 6 275 87 0 43 chr3 4474012 4474058 -223050520 + L2 LINE L2 3195 3238 -75 2160 112 3 0 chr3 4474670 4474965 -223049613 + AluSp SINE Alu 1 296 -17 390 363 57 6 chr3 4475153 4475310 -223049268 - MIR3 SINE MIR -24 184 20 28 0 0 0 chr3 4475418 4475446 -223049132 + AT_rich Low_complexity Low_complexity 1 28 0 1771 190 7 3 chr3 4475494 4475789 -223048789 + AluSx SINE Alu 1 296 -16 2361 123 5 32 chr3 4479299 4479673 -223044905 - THE1B LTR MaLR 0 364 1 8116 128 30 8 chr3 4480004 4481316 -223043262 - Tigger1 DNA MER2_type 0 2418 1079 3581 135 107 6 chr3 4481305 4481941 -223042637 - Tigger1 DNA MER2_type -1656 762 63 * 341 211 273 19 chr3 4483793 4483954 -223040624 - L1MC4a LINE L1 -1859 5949 5748 243 346 0 0 chr3 4483993 4484071 -223040507 - L1MC4a LINE L1 -2144 5664 5587 1690 80 0 0 chr3 4484089 4484302 -223040276 + AluSg SINE Alu 1 213 -97 401 236 183 21 chr3 4484344 4484535 -223040043 - L1MC4a LINE L1 -2291 5517 5296 549 300 143 29 chr3 4484571 4485115 -223039463 - L1MC4a LINE L1 -908 5238 4633 26 0 0 0 chr3 4485386 4485412 -223039166 + AT_rich Low_complexity Low_complexity 1 26 0 363 232 36 94 chr3 4486473 4486581 -223037997 + L2 LINE L2 3182 3282 -31 2545 98 30 6 chr3 4486581 4486947 -223037631 - THE1C LTR MaLR 0 375 1 363 232 36 94 chr3 4486947 4486976 -223037602 + L2 LINE L2 3282 3311 -2 562 280 13 13 chr3 4486980 4487130 -223037448 + MIR SINE MIR 34 183 -79 1670 188 40 3 chr3 4487383 4487708 -223036870 + MER1B DNA MER1_type 1 337 0 244 295 105 11 chr3 4487799 4487894 -223036684 - L3 LINE CR1 -278 1299 1196 305 261 76 32 chr3 4488468 4488625 -223035953 - L1ME LINE L1 -283 5838 5675 269 254 211 7 chr3 4488642 4488784 -223035794 - L1ME LINE L1 -1445 4701 4531 1873 151 18 0 chr3 4489680 4489965 -223034613 + AluJb SINE Alu 9 298 -14 254 267 67 33 chr3 4490205 4490295 -223034283 + MIR SINE MIR 13 105 -157 1042 130 0 34 chr3 4493448 4493625 -223030953 + AluSg/x SINE Alu 124 294 -15 234 261 54 43 chr3 4598057 4598149 -222926429 + MIR SINE MIR 103 195 -67 1655 156 3 52 chr3 4599579 4599907 -222924671 - AluJb SINE Alu 0 312 1 187 200 0 60 chr3 4599925 4599975 -222924603 - MIR SINE MIR -106 156 110 1658 157 18 11 chr3 4600533 4600819 -222923759 + AluJo SINE Alu 1 288 -24 207 187 36 65 chr3 4602526 4602665 -222921913 + (CATAA)n Simple_repeat Simple_repeat 5 139 0 1132 297 88 26 chr3 4605131 4605331 -222919247 - L2 LINE L2 0 3313 3127 1727 128 75 11 chr3 4605331 4605618 -222918960 + AluSx SINE Alu 1 304 0 1132 297 88 26 chr3 4605618 4606179 -222918399 - L2 LINE L2 -186 3127 2502 277 307 45 11 chr3 4606196 4606284 -222918294 - MIR SINE MIR -119 143 53 785 189 5 121 chr3 4606293 4606499 -222918079 - MER5A DNA MER1_type -1 188 7 342 336 79 21 chr3 4606940 4607080 -222917498 - MIR3 SINE MIR -3 205 58 1622 189 40 15 chr3 4608010 4608411 -222916167 - Charlie1 DNA MER1_type -8 2753 2343 198 285 180 47 chr3 4608544 4608716 -222915862 + MIR SINE MIR 21 215 -47 1774 132 91 0 chr3 4609158 4609423 -222915155 - AluSx SINE Alu -21 291 3 2358 76 3 0 chr3 4609902 4610204 -222914374 + AluY SINE Alu 1 303 -8 206 215 0 46 chr3 4610849 4610914 -222913664 - L2 LINE L2 -1052 2262 2201 1873 133 95 24 chr3 4611669 4612006 -222912572 - MER46B DNA MER2_type 0 236 1 633 278 68 68 chr3 4614084 4614466 -222910112 - MLT1J1 LTR MaLR 0 446 65 2052 201 57 9 chr3 4615765 4616204 -222908374 - LOR1b LTR ERV1 0 461 2 443 327 67 73 chr3 4617583 4618048 -222906530 + L2 LINE L2 2808 3269 -3 1617 192 13 55 chr3 4619394 4619774 -222904804 - MLT1A1 LTR MaLR -1 364 1 2319 181 36 23 chr3 4620092 4620621 -222903957 + L1MA8 LINE L1 5752 6287 -4 27 0 0 0 chr3 4620622 4620649 -222903929 + AT_rich Low_complexity Low_complexity 1 27 0 2236 107 0 19 chr3 4620705 4621022 -222903556 + AluSq SINE Alu 1 311 -2 2142 125 7 0 chr3 4621440 4621735 -222902843 + AluSx SINE Alu 1 297 -15 779 268 57 13 chr3 4622541 4622769 -222901809 - LTR16A1 LTR ERVL -12 445 208 561 256 35 12 chr3 4623648 4623820 -222900758 + MER5B DNA MER1_type 3 178 0 879 225 16 0 chr3 4623866 4624048 -222900530 - MER5A DNA MER1_type -3 186 2 659 292 118 55 chr3 4624967 4625296 -222899282 + L1M3d LINE L1 413 762 -5541 4968 257 32 26 chr3 4625601 4627019 -222897559 + L1M3d LINE L1 777 2184 -4198 2169 126 0 7 chr3 4627019 4627329 -222897249 + AluSx SINE Alu 1 308 -4 4968 257 32 26 chr3 4627329 4629224 -222895354 + L1M3d LINE L1 2184 4170 -2212 2019 117 38 0 chr3 4629224 4629515 -222895063 - AluSx SINE Alu -10 302 1 4968 257 32 26 chr3 4629515 4629600 -222894978 + L1M3d LINE L1 4170 4253 -2129 876 131 11 60 chr3 4629598 4629781 -222894797 - L1 LINE L1 -1947 4199 4026 * 2436 186 58 9 chr3 4629797 4630336 -222894242 + L1MB2 LINE L1 5591 6155 -16 5096 66 21 27 chr3 4630344 4631504 -222893074 - SVA Other Other -955 1386 2 500 290 168 0 chr3 4631556 4631711 -222892867 - MER5A DNA MER1_type 0 189 9 822 174 28 90 chr3 4632652 4632864 -222891714 - MER63A DNA MER1_type -8 202 4 2214 114 3 29 chr3 4633210 4633526 -222891052 + AluSx SINE Alu 1 308 -4 300 328 61 15 chr3 4633553 4633684 -222890894 - L2 LINE L2 -1 3312 3176 645 231 20 138 chr3 4634382 4634729 -222889849 + L1MD1 LINE L1 5927 6232 -10 268 250 0 98 chr3 4634846 4634938 -222889640 - MIR SINE MIR -16 246 164 1663 188 11 7 chr3 4635198 4635485 -222889093 - AluJo SINE Alu -24 288 1 2257 103 7 0 chr3 4636757 4637059 -222887519 - AluSx SINE Alu -8 304 1 208 258 186 31 chr3 4638889 4638986 -222885592 - L2 LINE L2 -27 3286 3175 320 215 168 9 chr3 4639209 4639316 -222885262 + L1ME3 LINE L1 6031 6154 -8 2040 110 28 3 chr3 4639423 4639714 -222884864 + AluSc SINE Alu 2 299 -10 373 305 58 29 chr3 4640192 4640366 -222884212 - L3 LINE CR1 -190 1387 1209 968 229 129 25 chr3 4641357 4641720 -222882858 - MLT1I LTR MaLR -4 405 5 473 241 135 7 chr3 4642199 4642340 -222882238 - Charlie8 DNA MER1_type -2171 246 88 695 261 43 34 chr3 4643622 4643856 -222880722 - MLT1K LTR MaLR -11 577 342 518 277 40 0 chr3 4643901 4644049 -222880529 - MLT1K LTR MaLR -412 176 23 354 347 68 46 chr3 4645117 4645621 -222878957 - L2 LINE L2 -499 2815 2301 302 256 84 116 chr3 4645632 4645775 -222878803 + L2 LINE L2 3012 3147 -166 1587 195 30 10 chr3 4645775 4645946 -222878632 - AluJo SINE Alu -8 304 123 213 39 0 0 chr3 4645946 4645972 -222878606 + (TTTTG)n Simple_repeat Simple_repeat 4 29 0 1587 195 30 10 chr3 4645972 4646098 -222878480 - AluJo SINE Alu -189 123 1 302 256 84 116 chr3 4646098 4646169 -222878409 + L2 LINE L2 3147 3219 -94 2521 59 0 3 chr3 4646246 4646552 -222878026 + AluY SINE Alu 1 305 -6 914 173 62 6 chr3 4646557 4646736 -222877842 - MLT1D LTR MaLR -60 445 257 458 237 46 94 chr3 4646742 4646951 -222877627 - MER4C LTR ERV1 -8 685 468 2318 61 0 0 chr3 4646951 4647272 -222877306 - AluY SINE Alu 0 321 1 458 237 46 94 chr3 4647272 4647576 -222877002 - MER4C LTR ERV1 -225 468 125 513 126 54 18 chr3 4647634 4647745 -222876833 - MER4C LTR ERV1 -349 116 2 199 260 19 115 chr3 4649545 4649649 -222874929 + L2 LINE L2 2565 2658 -656 343 344 38 13 chr3 4650455 4650612 -222873966 + MER5A DNA MER1_type 24 184 -5 369 362 22 26 chr3 4650616 4650845 -222873733 + L2 LINE L2 2745 2972 -342 1434 208 20 35 chr3 4650848 4651194 -222873384 + MER58B DNA MER1_type 1 341 0 436 295 18 48 chr3 4652517 4652683 -222871895 - MIR SINE MIR -66 196 36 528 249 76 15 chr3 4653962 4654159 -222870419 - MER63A DNA MER1_type 0 210 2 634 314 206 31 chr3 4655321 4655907 -222868671 + L2 LINE L2 2037 2725 -589 368 277 69 31 chr3 4656188 4656318 -222868260 + L2 LINE L2 3137 3271 -1 276 194 250 8 chr3 4656869 4656993 -222867585 + MER103 DNA DNA 2 155 -11 279 71 0 0 chr3 4657740 4657782 -222866796 + (TA)n Simple_repeat Simple_repeat 2 43 0 1848 110 0 0 chr3 4657782 4658027 -222866551 - AluSc SINE Alu -19 290 46 684 333 40 17 chr3 4658896 4659247 -222865331 - LTR16A LTR ERVL -6 444 86 187 130 22 22 chr3 4659746 4659792 -222864786 + GA-rich Low_complexity Low_complexity 4 49 0 537 308 49 57 chr3 4660743 4660844 -222863734 + Charlie8 DNA MER1_type 71 171 -2246 1875 170 3 10 chr3 4660844 4661156 -222863422 - AluJo SINE Alu -2 310 1 537 308 49 57 chr3 4661156 4661440 -222863138 + Charlie8 DNA MER1_type 171 453 -1964 599 185 110 153 chr3 4662680 4663026 -222861552 + MER46C DNA MER2_type 2 332 -6 658 313 70 10 chr3 4663105 4663436 -222861142 + L2 LINE L2 2740 3095 -218 437 319 14 28 chr3 4664987 4665131 -222859447 + L2 LINE L2 3168 3309 -4 * 519 237 101 0 chr3 4665129 4665268 -222859310 + MIR SINE MIR 72 224 -38 2023 130 14 43 chr3 4665343 4665690 -222858888 - MER1B DNA MER1_type 0 337 1 180 194 194 0 chr3 4666499 4666535 -222858043 + MIR SINE MIR 64 106 -102 338 367 80 15 chr3 4667044 4667243 -222857335 - MIR SINE MIR -19 243 32 811 325 83 32 chr3 4667374 4667901 -222856677 + L2 LINE L2 1823 2376 -938 212 193 70 35 chr3 4668012 4668069 -222856509 - L2 LINE L2 0 3313 3255 595 339 68 24 chr3 4669555 4669924 -222854654 - MLT1K LTR MaLR -180 408 24 3319 172 30 6 chr3 4669966 4670623 -222853955 + L1MB3 LINE L1 5509 6181 -2 3959 153 27 6 chr3 4670768 4671586 -222852992 - L1MA9 LINE L1 -22 6290 5356 3195 167 13 0 chr3 4671586 4672138 -222852440 - L1PA16 LINE L1 -1 6165 5607 27 0 0 0 chr3 4673704 4673731 -222850847 + AT_rich Low_complexity Low_complexity 1 27 0 2661 33 0 0 chr3 4675099 4675400 -222849178 + AluY SINE Alu 2 302 -9 307 202 46 46 chr3 4675453 4675562 -222849016 + MLT1H LTR MaLR 441 549 0 255 284 20 20 chr3 4676551 4676653 -222847925 - LTR67 LTR ERVL -7 550 449 642 309 57 0 chr3 4677083 4677277 -222847301 - L3 LINE CR1 -459 1118 914 1006 277 80 58 chr3 4677573 4678071 -222846507 + L2 LINE L2 2805 3313 0 508 254 56 0 chr3 4678096 4678222 -222846356 + L2 LINE L2 3178 3310 -3 418 290 168 0 chr3 4678636 4678791 -222845787 - MER5A DNA MER1_type 0 189 9 187 367 17 0 chr3 4678921 4678981 -222845597 - MIR SINE MIR -70 138 78 213 296 159 0 chr3 4679056 4679144 -222845434 - L2 LINE L2 0 3313 3212 842 203 35 5 chr3 4679499 4679696 -222844882 + MER3 DNA MER1_type 3 205 -4 228 350 133 21 chr3 4679700 4679934 -222844644 + L2 LINE L2 2605 2864 -450 2099 177 37 0 chr3 4680522 4680924 -222843654 + L1MA3 LINE L1 5887 6303 -2 4073 113 5 70 chr3 4681090 4681828 -222842750 - LTR8 LTR ERV1 0 691 2 228 67 0 0 chr3 4682770 4682800 -222841778 + (CCA)n Simple_repeat Simple_repeat 1 30 0 444 174 0 83 chr3 4683039 4683104 -222841474 - MLT1K LTR MaLR 0 588 536 527 185 0 22 chr3 4683104 4683239 -222841339 - L1MB8 LINE L1 -1 6177 6046 444 174 0 83 chr3 4683239 4683294 -222841284 - MLT1K LTR MaLR -52 536 478 966 280 56 41 chr3 4683321 4683664 -222840914 - MLT1K LTR MaLR -187 401 50 216 0 0 0 chr3 4683664 4683688 -222840890 + (TTA)n Simple_repeat Simple_repeat 2 25 0 966 280 56 41 chr3 4683688 4683737 -222840841 - MLT1K LTR MaLR -538 50 3 212 313 0 38 chr3 4683770 4683850 -222840728 + L2 LINE L2 3189 3265 -7 304 148 49 37 chr3 4684080 4684111 -222840467 - L1MC4 LINE L1 -1345 6697 6668 1695 113 118 136 chr3 4684111 4684218 -222840360 - Tigger2a DNA MER2_type -2274 434 327 233 29 0 29 chr3 4684218 4684253 -222840325 + (TTG)n Simple_repeat Simple_repeat 2 35 0 1596 183 7 18 chr3 4684259 4684538 -222840040 - AluJo SINE Alu -30 282 7 1695 113 118 136 chr3 4684538 4684597 -222839981 - Tigger2a DNA MER2_type -2386 322 263 1779 159 10 17 chr3 4684597 4684893 -222839685 - AluJb SINE Alu -18 294 1 1695 113 118 136 chr3 4684893 4684935 -222839643 - Tigger2a DNA MER2_type -2445 263 222 2175 117 3 0 chr3 4684935 4685234 -222839344 - AluSx SINE Alu -12 300 1 1695 113 118 136 chr3 4685234 4685458 -222839120 - Tigger2a DNA MER2_type -2486 222 1 304 148 49 37 chr3 4685458 4685507 -222839071 - L1MC4 LINE L1 -1374 6668 6616 243 175 0 0 chr3 4686448 4686505 -222838073 + (CA)n Simple_repeat Simple_repeat 1 57 0 777 266 92 17 chr3 4688074 4688431 -222836147 - MER113 DNA MER1_type? -2 519 136 454 273 66 50 chr3 4688538 4688736 -222835842 - MIR SINE MIR -21 241 41 534 325 73 17 chr3 4689463 4689697 -222834881 + MIR SINE MIR 2 248 -14 1513 205 58 54 chr3 4691882 4692345 -222832233 + MLT1C LTR MaLR 2 466 -1 481 315 35 0 chr3 4692509 4692741 -222831837 - MER102a DNA MER1_type 0 330 91 2619 153 109 27 chr3 4693023 4693584 -222830994 - LTR36 LTR ERV1 -4 607 1 336 333 8 0 chr3 4693611 4693734 -222830844 + Tigger8 DNA MER2_type 530 653 -13 3168 134 23 72 chr3 4694737 4695315 -222829263 - LTR9 LTR ERV1 0 612 67 2516 43 0 0 chr3 4695315 4695616 -222828962 + AluY SINE Alu 1 301 -10 3168 134 23 72 chr3 4695616 4695680 -222828898 - LTR9 LTR ERV1 -545 67 1 1792 152 28 3 chr3 4695915 4696204 -222828374 + AluSx SINE Alu 1 296 -16 694 291 135 35 chr3 4696545 4696892 -222827686 - MLT1K LTR MaLR -73 515 134 2619 45 3 0 chr3 4697087 4697395 -222827183 + AluY SINE Alu 2 310 -1 906 241 97 28 chr3 4697706 4697922 -222826656 - MIR SINE MIR -30 232 2 23 68 0 0 chr3 4698188 4698232 -222826346 + AT_rich Low_complexity Low_complexity 1 44 0 827 194 104 15 chr3 4698477 4698678 -222825900 + MER20 DNA MER1_type 1 219 0 233 351 26 0 chr3 4698692 4698769 -222825809 - MIR SINE MIR -156 106 28 2093 146 0 0 chr3 4700052 4700354 -222824224 - AluJb SINE Alu -10 302 1 340 398 29 5 chr3 4700390 4700596 -222823982 - MIR SINE MIR -24 238 28 786 313 75 30 chr3 4700937 4701613 -222822965 - L2 LINE L2 -7 3306 2601 254 240 280 27 chr3 4703343 4703493 -222821085 - MIR3 SINE MIR -11 197 10 515 271 202 10 chr3 4704097 4704300 -222820278 + MIR SINE MIR 11 252 -10 193 284 60 0 chr3 4704325 4704392 -222820186 + MIR SINE MIR 166 236 -26 21 0 0 0 chr3 4705014 4705035 -222819543 + AT_rich Low_complexity Low_complexity 1 21 0 331 224 112 43 chr3 4705068 4705229 -222819349 - MER113 DNA MER1_type? -346 175 4 335 308 23 39 chr3 4707030 4707160 -222817418 + MER5A DNA MER1_type 57 184 -5 1113 208 47 7 chr3 4707170 4707439 -222817139 + MER58 DNA MER1_type 1 281 -56 2260 95 0 7 chr3 4707439 4707735 -222816843 - AluSq SINE Alu -15 298 5 407 158 37 0 chr3 4707750 4707832 -222816746 + MER58 DNA MER1_type 2320 2404 -16 21 36 0 0 chr3 4708484 4708512 -222816066 + AT_rich Low_complexity Low_complexity 1 28 0 261 83 0 0 chr3 4708734 4708770 -222815808 + (TA)n Simple_repeat Simple_repeat 2 37 0 291 324 94 25 chr3 4709787 4710099 -222814479 + L1MC/D LINE L1 5395 5729 -392 202 232 24 24 chr3 4710117 4710199 -222814379 + (TATAA)n Simple_repeat Simple_repeat 2 83 0 575 310 6 18 chr3 4712463 4712634 -222811944 + MER5A DNA MER1_type 16 184 -5 247 364 19 31 chr3 4712710 4712872 -222811706 - L2 LINE L2 -216 3056 2897 760 298 188 51 chr3 4713450 4713546 -222811032 + L3 LINE CR1 461 543 -1034 1129 158 50 180 chr3 4713546 4713963 -222810615 - MLT1A1 LTR MaLR 0 365 3 760 298 188 51 chr3 4713963 4714687 -222809891 + L3 LINE CR1 543 1393 -184 192 354 21 42 chr3 4714720 4714816 -222809762 + L3 LINE CR1 1464 1557 -20 198 103 0 0 chr3 4715006 4715035 -222809543 + (TTTC)n Simple_repeat Simple_repeat 2 30 0 209 171 0 0 chr3 4716563 4716598 -222807980 + GA-rich Low_complexity Low_complexity 2 36 0 274 277 36 24 chr3 4716763 4716846 -222807732 + MIR3 SINE MIR 122 205 -3 2423 136 4 87 chr3 4717416 4717890 -222806688 + L1MB7 LINE L1 5680 6107 -77 1975 142 0 32 chr3 4717890 4718199 -222806379 - AluJb SINE Alu -13 299 1 2423 136 4 87 chr3 4718199 4718254 -222806324 + L1MB7 LINE L1 6107 6165 -19 284 266 273 7 chr3 4718662 4718816 -222805762 + MIR SINE MIR 3 197 -65 314 179 0 0 chr3 4719111 4719167 -222805411 - MLT-int LTR MaLR -993 742 687 1576 190 11 39 chr3 4719287 4719676 -222804902 - MLT1A1-int LTR MaLR -664 707 316 1366 174 10 49 chr3 4719686 4719991 -222804587 - MLT1A1 LTR MaLR -60 305 13 2203 62 42 10 chr3 4720027 4720315 -222804263 - AluY SINE Alu -14 297 1 253 298 164 35 chr3 4720328 4720499 -222804079 + L2 LINE L2 3120 3312 -1 198 301 68 45 chr3 4720826 4720959 -222803619 + MIR SINE MIR 9 144 -118 449 88 25 38 chr3 4722890 4722970 -222801608 + MADE1 DNA Mariner 2 80 0 272 227 57 11 chr3 4723414 4723502 -222801076 - HAL1 LINE L1 -1415 1092 1001 2544 34 0 0 chr3 4723577 4723872 -222800706 - AluY SINE Alu -16 295 1 1225 280 154 29 chr3 4723876 4724611 -222799967 - HAL1 LINE L1 -1596 911 85 306 153 0 0 chr3 4726017 4726076 -222798502 + (ATG)n Simple_repeat Simple_repeat 2 60 0 341 336 36 9 chr3 4726151 4726261 -222798317 - MIR SINE MIR -137 125 13 294 250 0 0 chr3 4726423 4726491 -222798087 - L2 LINE L2 -499 2815 2748 221 260 0 0 chr3 4726513 4726563 -222798015 - MIR SINE MIR 0 262 213 1572 127 0 5 chr3 4726583 4726804 -222797774 - AluSg/x SINE Alu -6 306 87 2230 118 3 0 chr3 4726826 4727130 -222797448 + AluSq SINE Alu 1 305 -8 330 345 25 49 chr3 4727269 4727472 -222797106 - MIR SINE MIR -44 218 21 360 0 0 0 chr3 4728187 4728227 -222796351 + (CA)n Simple_repeat Simple_repeat 2 41 0 289 206 29 49 chr3 4731900 4732002 -222792576 + L1MEd LINE L1 666 765 -5354 2703 231 46 34 chr3 4732790 4733433 -222791145 + L1MC4 LINE L1 6638 7292 -750 1814 153 43 10 chr3 4733433 4733734 -222790844 - AluSx SINE Alu -1 311 1 2703 231 46 34 chr3 4733734 4733804 -222790774 + L1MC4 LINE L1 7292 7360 -682 252 200 0 0 chr3 4733812 4733872 -222790706 + (TG)n Simple_repeat Simple_repeat 1 60 0 239 109 0 0 chr3 4733891 4733937 -222790641 + LTR66 LTR ERVL 394 439 -171 * 246 111 0 0 chr3 4733931 4733976 -222790602 - LTR66 LTR ERVL -171 439 395 465 220 60 22 chr3 4733981 4734125 -222790453 + L1MC4 LINE L1 7880 7994 -1 1554 292 179 16 chr3 4734707 4735513 -222789065 - L3 LINE CR1 -89 1488 552 1379 186 50 47 chr3 4735937 4736081 -222788497 + AluJo SINE Alu 1 143 -169 1562 186 0 62 chr3 4736081 4736404 -222788174 + AluSx SINE Alu 1 303 -9 1379 186 50 47 chr3 4736404 4736560 -222788018 + AluJo SINE Alu 143 302 -10 423 168 140 19 chr3 4738071 4738178 -222786400 + MIR SINE MIR 103 222 -40 207 0 0 0 chr3 4738524 4738547 -222786031 + (A)n Simple_repeat Simple_repeat 1 23 0 206 238 16 0 chr3 4739084 4739147 -222785431 + (GTTTG)n Simple_repeat Simple_repeat 1 64 0 23 33 0 0 chr3 4739460 4739490 -222785088 + AT_rich Low_complexity Low_complexity 1 30 0 335 217 105 28 chr3 4739684 4739827 -222784751 + L1ME4a LINE L1 5967 6120 -1 225 327 71 9 chr3 4740618 4740752 -222783826 - MIR SINE MIR -70 138 37 825 211 35 30 chr3 4741334 4741533 -222783045 - MER105 DNA DNA -4 200 1 216 285 89 32 chr3 4742890 4742945 -222781633 - MIR SINE MIR -1 261 211 1420 186 0 36 chr3 4742945 4743193 -222781385 - MER8 DNA MER2_type 0 239 1 216 285 89 32 chr3 4743193 4743260 -222781318 - MIR SINE MIR -51 211 132 199 331 67 18 chr3 4743483 4743647 -222780931 - MIR SINE MIR -67 141 23 963 233 69 25 chr3 4743790 4744035 -222780543 + MIR SINE MIR 7 262 0 282 311 49 8 chr3 4748339 4748461 -222776117 + L2 LINE L2 3187 3313 0 418 353 39 7 chr3 4748509 4748662 -222775916 + L2 LINE L2 3115 3272 0 1968 144 7 0 chr3 4749167 4749466 -222775112 + AluJb SINE Alu 1 301 -11 24 32 0 0 chr3 4749506 4749537 -222775041 + AT_rich Low_complexity Low_complexity 1 31 0 1821 147 14 7 chr3 4749710 4749996 -222774582 - AluJo SINE Alu -24 288 1 180 200 0 60 chr3 4750554 4750604 -222773974 + MIR SINE MIR 110 156 -106 1824 150 0 43 chr3 4750622 4750948 -222773630 + AluJb SINE Alu 1 312 0 227 261 54 43 chr3 4752380 4752472 -222772106 - MIR SINE MIR -67 195 103 2240 91 3 3 chr3 4754797 4755084 -222769494 + AluSp SINE Alu 12 298 -15 293 347 41 0 chr3 4755591 4755712 -222768866 + MIR3 SINE MIR 31 156 -52 270 185 174 0 chr3 4755715 4755807 -222768771 + MER113 DNA MER1_type? 4 111 -410 1775 152 20 10 chr3 4755821 4756117 -222768461 + AluJo SINE Alu 1 299 -13 609 229 100 26 chr3 4758418 4758756 -222765822 - MLT1G LTR MaLR -2 593 153 25767 64 4 9 chr3 4758775 4762096 -222762482 + L1P LINE L1 11 3315 -2831 1225 222 108 7 chr3 4762326 4762623 -222761955 - MER2 DNA MER2_type -13 332 6 213 39 0 0 chr3 4762633 4762659 -222761919 + (TC)n Simple_repeat Simple_repeat 2 27 0 * 375 60 0 0 chr3 4762658 4762708 -222761870 + (TG)n Simple_repeat Simple_repeat 1 50 0 278 149 21 0 chr3 4763104 4763151 -222761427 - Charlie8 DNA MER1_type -6 2411 2364 606 252 63 15 chr3 4763188 4763223 -222761355 - MIR SINE MIR -34 228 196 2223 120 0 0 chr3 4763223 4763524 -222761054 - AluSx SINE Alu -11 301 1 606 252 63 15 chr3 4763524 4763694 -222760884 - MIR SINE MIR -66 196 13 298 280 156 53 chr3 4763715 4763940 -222760638 - L2 LINE L2 -150 3163 2916 277 126 24 0 chr3 4764105 4764166 -222760412 - MSTC LTR MaLR -26 431 308 * 540 208 53 52 chr3 4764165 4764341 -222760237 - MSTC LTR MaLR -185 180 1 620 248 62 6 chr3 4764342 4764503 -222760075 - Charlie8 DNA MER1_type -2237 180 11 181 286 71 51 chr3 4764537 4764623 -222759955 - MIR SINE MIR -136 126 36 2360 99 3 0 chr3 4764623 4764925 -222759653 + AluSq SINE Alu 1 303 -10 181 286 71 51 chr3 4764925 4764936 -222759642 - MIR SINE MIR -226 36 27 * 613 255 28 0 chr3 4764927 4765072 -222759506 + MIR SINE MIR 27 175 -87 1687 112 31 5 chr3 4765090 4765314 -222759264 - MER30 DNA MER1_type 0 230 1 1135 178 28 0 chr3 4766053 4766233 -222758345 + MER5A DNA MER1_type 3 187 -2 702 191 112 27 chr3 4766357 4766545 -222758033 - MER20 DNA MER1_type 0 219 16 245 246 33 0 chr3 4766582 4766643 -222757935 + MER5B DNA MER1_type 116 178 0 2038 140 7 0 chr3 4767176 4767476 -222757102 - AluSx SINE Alu -10 302 1 303 250 70 20 chr3 4767485 4767585 -222756993 - MIR SINE MIR -77 185 81 879 225 69 23 chr3 4768749 4769011 -222755567 + L1MB4 LINE L1 5907 6180 0 362 280 32 0 chr3 4769021 4769146 -222755432 - L2 LINE L2 -991 2323 2195 571 275 6 25 chr3 4769734 4769894 -222754684 + MIR SINE MIR 34 190 -72 2096 90 54 0 chr3 4772448 4772726 -222751852 - AluSq SINE Alu -20 293 1 499 222 104 22 chr3 4773093 4773228 -222751350 + L2 LINE L2 3122 3267 -5 197 363 12 25 chr3 4774757 4774837 -222749741 + MIR SINE MIR 2 80 -182 2255 128 0 0 chr3 4775976 4776281 -222748297 + AluSg SINE Alu 1 305 -5 202 358 0 0 chr3 4776550 4776617 -222747961 - L2 LINE L2 -1 3271 3205 311 327 58 13 chr3 4776754 4776910 -222747668 - MIR SINE MIR -88 174 12 213 121 0 0 chr3 4776948 4776981 -222747597 + (TAGA)n Simple_repeat Simple_repeat 2 34 0 552 188 240 19 chr3 4777159 4777313 -222747265 - MER53 DNA DNA 0 189 2 2330 98 7 0 chr3 4777573 4777880 -222746698 - AluSp SINE Alu -4 309 1 325 246 144 8 chr3 4778150 4778268 -222746310 - L2 LINE L2 -10 3303 3170 848 223 36 16 chr3 4778519 4778712 -222745866 + MER58A DNA MER1_type 19 215 -9 1747 128 7 40 chr3 4778712 4779009 -222745569 + AluJb SINE Alu 13 299 -13 180 406 82 30 chr3 4779563 4779635 -222744943 - L2 LINE L2 -79 3193 3126 2138 101 0 3 chr3 4779635 4779931 -222744647 + AluSc SINE Alu 1 295 -14 180 406 82 30 chr3 4779931 4780225 -222744353 - L2 LINE L2 -146 3126 2808 212 302 52 10 chr3 4780310 4780406 -222744172 - L2 LINE L2 -652 2662 2563 412 292 93 83 chr3 4781533 4781834 -222742744 - L2 LINE L2 -9 3263 2960 821 209 12 6 chr3 4782234 4782397 -222742181 + MER5A DNA MER1_type 1 164 -25 1632 169 6 49 chr3 4782433 4782758 -222741820 + AluJo SINE Alu 1 311 -1 185 260 20 0 chr3 4782953 4783003 -222741575 + MIR SINE MIR 104 154 -108 270 0 0 0 chr3 4783774 4783804 -222740774 + (TC)n Simple_repeat Simple_repeat 1 30 0 22 0 0 0 chr3 4784536 4784558 -222740020 + AT_rich Low_complexity Low_complexity 1 22 0 2392 88 0 7 chr3 4784719 4785025 -222739553 - AluSg SINE Alu -6 304 1 262 267 150 0 chr3 4785087 4785207 -222739371 - L1ME LINE L1 -279 5842 5705 226 386 30 0 chr3 4785272 4785373 -222739205 - L2 LINE L2 0 3272 3169 718 158 79 0 chr3 4785487 4785601 -222738977 + FLAM_C SINE Alu 2 124 -19 270 0 0 0 chr3 4785697 4785727 -222738851 + (TG)n Simple_repeat Simple_repeat 2 31 0 1683 195 7 0 chr3 4785728 4786020 -222738558 - AluJb SINE Alu -18 294 1 2149 98 28 0 chr3 4786768 4787054 -222737524 + AluSx SINE Alu 1 294 -18 1298 181 42 0 chr3 4787482 4787697 -222736881 + MER58A DNA MER1_type 1 224 0 1984 221 47 10 chr3 4787715 4788222 -222736356 + L1M4 LINE L1 4413 4938 -1208 309 350 57 13 chr3 4788380 4788537 -222736041 - MIR3 SINE MIR 0 208 45 876 169 0 0 chr3 4788620 4788750 -222735828 + FLAM_A SINE Alu 3 132 -1 2208 114 23 0 chr3 4789334 4789633 -222734945 - AluJb SINE Alu -6 306 1 2069 130 0 3 chr3 4789735 4790028 -222734550 - AluSg SINE Alu -16 294 3 395 283 145 0 chr3 4790842 4790980 -222733598 + MIR SINE MIR 40 197 -65 930 37 0 0 chr3 4791434 4791542 -222733036 - L1PA4 LINE L1 -2 6153 6046 1883 143 4 4 chr3 4791616 4791896 -222732682 + AluSx SINE Alu 1 280 -32 358 306 73 8 chr3 4792072 4792196 -222732382 - L2 LINE L2 0 3272 3141 2331 103 0 3 chr3 4792682 4792984 -222731594 + AluSx SINE Alu 1 301 -11 340 315 109 25 chr3 4793331 4793569 -222731009 + L2 LINE L2 2232 2489 -825 280 226 252 9 chr3 4793670 4793785 -222730793 + MIR3 SINE MIR 40 182 -26 1978 140 13 0 chr3 4793884 4794191 -222730387 + AluSx SINE Alu 1 311 -1 642 250 152 10 chr3 4794312 4794516 -222730062 - MIR SINE MIR -14 248 16 1814 185 0 3 chr3 4794828 4795126 -222729452 - AluJo SINE Alu -15 297 1 283 237 140 18 chr3 4796793 4796907 -222727671 + MIR3 SINE MIR 1 128 -80 201 211 0 0 chr3 4797544 4797596 -222726982 + (TG)n Simple_repeat Simple_repeat 1 52 0 1873 131 16 26 chr3 4797897 4798203 -222726375 + AluSx SINE Alu 1 303 -9 557 212 247 6 chr3 4798203 4798373 -222726205 + MIR SINE MIR 51 261 -1 351 278 32 24 chr3 4798823 4798949 -222725629 + MIR SINE MIR 20 146 -116 812 84 0 19 chr3 4800703 4800810 -222723768 + FLAM_A SINE Alu 22 126 -16 3562 119 12 2 chr3 4800850 4801356 -222723222 + L1PB3 LINE L1 5644 6154 0 205 283 47 47 chr3 4801692 4801798 -222722780 + MIR SINE MIR 69 174 -88 232 222 123 0 chr3 4802397 4802478 -222722100 - MIR3 SINE MIR -16 192 102 194 300 14 29 chr3 4802668 4802738 -222721840 - MIR SINE MIR -120 88 20 285 217 0 17 chr3 4803363 4803423 -222721155 + MER91 DNA MER1_type 2 60 -80 1881 72 103 4 chr3 4803777 4804039 -222720539 - AluSc SINE Alu -17 292 5 212 315 23 62 chr3 4804110 4804239 -222720339 + MIR SINE MIR 2 133 -75 22 0 0 0 chr3 4804274 4804296 -222720282 + AT_rich Low_complexity Low_complexity 1 22 0 2531 57 0 22 chr3 4804685 4805003 -222719575 - AluY SINE Alu 0 311 1 314 245 96 11 chr3 4805285 4805379 -222719199 - MER69A DNA AcHobo 0 177 76 1798 191 68 28 chr3 4805379 4805580 -222718998 + L1MD2 LINE L1 5944 6135 -224 2225 113 3 0 chr3 4805580 4805890 -222718688 + AluSx SINE Alu 1 311 -1 1798 191 68 28 chr3 4805890 4806087 -222718491 + L1MD2 LINE L1 6135 6358 -1 248 307 44 18 chr3 4806092 4806206 -222718372 - MER69A DNA AcHobo -60 117 1 225 352 38 52 chr3 4807031 4807241 -222717337 + L2 LINE L2 2564 2770 -544 549 271 84 67 chr3 4807433 4807732 -222716846 + MER5C DNA MER1_type 21 324 0 530 241 195 0 chr3 4808008 4808182 -222716396 + MIR SINE MIR 49 256 -6 3547 152 48 2 chr3 4808237 4808843 -222715735 - L1MB3 LINE L1 0 6183 5550 2130 116 3 16 chr3 4808844 4809154 -222715424 - AluSx SINE Alu -3 309 4 242 253 24 60 chr3 4809940 4810023 -222714555 + MIR SINE MIR 48 127 -81 2442 77 0 3 chr3 4810127 4810437 -222714141 + AluY SINE Alu 1 309 -2 206 310 113 0 chr3 4810563 4810634 -222713944 - MIR SINE MIR -155 107 29 760 222 102 9 chr3 4810983 4811199 -222713379 - MIR SINE MIR -13 249 14 999 190 20 20 chr3 4811639 4811839 -222712739 + MER20 DNA MER1_type 1 200 -19 210 333 0 43 chr3 4811898 4811967 -222712611 + L3 LINE CR1 1508 1573 -4 2003 140 10 0 chr3 4812542 4812835 -222711743 - AluSx SINE Alu -16 296 1 339 314 58 19 chr3 4813031 4813187 -222711391 + MIR3 SINE MIR 39 200 -8 939 117 7 15 chr3 4813345 4813482 -222711096 + AluJb SINE Alu 1 136 -176 1915 163 0 0 chr3 4813482 4813770 -222710808 + AluJb SINE Alu 6 293 -19 261 0 0 0 chr3 4813789 4813818 -222710760 + (TTA)n Simple_repeat Simple_repeat 2 30 0 2169 100 7 0 chr3 4813820 4814100 -222710478 - AluSx SINE Alu -30 282 1 257 109 455 0 chr3 4814551 4814606 -222709972 - MADE1 DNA Mariner 0 80 1 1848 146 35 0 chr3 4814995 4815111 -222709467 + AluSx SINE Alu 1 112 -200 414 0 0 0 chr3 4815111 4815157 -222709421 + (TAA)n Simple_repeat Simple_repeat 2 47 0 1848 146 35 0 chr3 4815157 4815328 -222709250 + AluSx SINE Alu 112 298 -14 424 246 53 18 chr3 4816352 4816466 -222708112 - MIR3 SINE MIR -77 131 14 1263 124 0 43 chr3 4817129 4817315 -222707263 - AluSx SINE Alu -134 178 1 685 224 39 86 chr3 4817446 4817701 -222706877 - MER112 DNA MER1_type -12 248 6 299 269 86 30 chr3 4817788 4818022 -222706556 - L1ME4a LINE L1 -2 6119 5873 1029 186 9 24 chr3 4818116 4818184 -222706394 - MER3 DNA MER1_type -1 208 141 1936 143 7 7 chr3 4818184 4818471 -222706107 - AluSx SINE Alu -25 287 1 1029 186 9 24 chr3 4818471 4818612 -222705966 - MER3 DNA MER1_type -68 141 2 227 393 57 0 chr3 4820202 4820324 -222704254 - MIR SINE MIR -113 149 21 261 0 0 0 chr3 4821521 4821550 -222703028 + (CAA)n Simple_repeat Simple_repeat 2 30 0 276 284 0 68 chr3 4822736 4822824 -222701754 + L2 LINE L2 3168 3249 -23 2256 97 0 3 chr3 4825619 4825908 -222698670 - AluSx SINE Alu -24 288 1 193 192 154 19 chr3 4825928 4825980 -222698598 - L2 LINE L2 -3 3310 3252 185 0 0 39 chr3 4826067 4826093 -222698485 + (CAAA)n Simple_repeat Simple_repeat 2 26 0 2196 108 0 7 chr3 4826197 4826494 -222698084 - AluSq SINE Alu -18 295 1 376 249 115 91 chr3 4826741 4826935 -222697643 + L1ME4a LINE L1 5631 5834 -287 1887 135 7 0 chr3 4826935 4827216 -222697362 - AluSg SINE Alu -15 295 13 376 249 115 91 chr3 4827216 4827274 -222697304 + L1ME4a LINE L1 5834 5889 -232 273 180 16 141 chr3 4827362 4827490 -222697088 - MLT1H LTR MaLR 0 549 438 2054 181 57 53 chr3 4827911 4828180 -222696398 + L1MB8 LINE L1 4789 5055 -1091 2267 110 0 10 chr3 4828180 4828489 -222696089 - AluSx SINE Alu -1 311 6 2054 181 57 53 chr3 4828489 4828614 -222695964 + L1MB8 LINE L1 5055 5178 -968 2055 121 4 4 chr3 4828614 4828916 -222695662 + AluSx SINE Alu 1 302 0 2054 181 57 53 chr3 4828916 4829044 -222695534 + L1MB8 LINE L1 5178 5316 -830 833 199 6 0 chr3 4829046 4829202 -222695376 + FRAM SINE Alu 1 40 0 4484 182 19 25 chr3 4829205 4830085 -222694493 + L1MB8 LINE L1 5304 6178 0 2004 137 0 22 chr3 4830366 4830681 -222693897 - AluSx SINE Alu -2 310 3 216 165 22 114 chr3 4830796 4830901 -222693677 - MIR SINE MIR -62 146 56 21 36 0 0 chr3 4831103 4831131 -222693447 + AT_rich Low_complexity Low_complexity 1 28 0 1857 158 18 0 chr3 4831135 4831419 -222693159 - AluJo SINE Alu -23 289 1 863 168 0 0 chr3 4832279 4832404 -222692174 - AluJb SINE Alu -187 125 1 1544 192 3 36 chr3 4832448 4832756 -222691822 - AluJo SINE Alu -14 298 1 2275 104 0 0 chr3 4832979 4833277 -222691301 + AluSx SINE Alu 12 309 -3 672 178 8 0 chr3 4833486 4833604 -222690974 + MLT1D LTR MaLR 387 505 0 499 258 141 0 chr3 4833944 4834107 -222690471 + MIR SINE MIR 32 217 -45 180 77 0 0 chr3 4834195 4834221 -222690357 + (TGAA)n Simple_repeat Simple_repeat 1 26 0 1752 139 58 41 chr3 4834560 4834855 -222689723 - AluSx SINE Alu -12 300 1 2761 229 23 76 chr3 4835321 4835370 -222689208 - L1ME1 LINE L1 -6 6160 6110 1870 135 153 42 chr3 4835370 4835681 -222688897 + MSTA LTR MaLR 1 365 -63 2467 49 0 30 chr3 4835681 4835986 -222688592 - AluY SINE Alu -15 296 1 1870 135 153 42 chr3 4835986 4836059 -222688519 + MSTA LTR MaLR 365 428 0 2761 229 23 76 chr3 4836059 4836242 -222688336 - L1ME1 LINE L1 -56 6110 5919 2217 112 0 0 chr3 4836242 4836536 -222688042 - AluSg SINE Alu -16 294 1 2761 229 23 76 chr3 4836536 4837039 -222687539 - L1ME1 LINE L1 -247 5919 5391 2077 131 7 0 chr3 4837039 4837330 -222687248 + AluSg SINE Alu 1 293 -17 2761 229 23 76 chr3 4837330 4837389 -222687189 - L1ME1 LINE L1 -775 5391 5408 1524 175 39 39 chr3 4837389 4837674 -222686904 - AluJb SINE Alu -27 285 1 2761 229 23 76 chr3 4837674 4837732 -222686846 - L1ME1 LINE L1 -757 5409 5350 2800 252 61 25 chr3 4837776 4838804 -222685774 - L1ME1 LINE L1 -1790 4356 3292 266 50 25 0 chr3 4838839 4838879 -222685699 + (TC)n Simple_repeat Simple_repeat 1 41 0 932 213 189 7 chr3 4838879 4838955 -222685623 - MER2 DNA MER2_type 0 344 283 2335 92 0 0 chr3 4838955 4839250 -222685328 + AluSx SINE Alu 5 299 -13 932 213 189 7 chr3 4839250 4839464 -222685114 - MER2 DNA MER2_type -61 283 1 1863 97 37 23 chr3 4840022 4840322 -222684256 + AluSq SINE Alu 1 304 -9 4588 91 21 21 chr3 4841929 4842388 -222682190 - PABL_A LTR ERV1 -9 651 190 2371 93 0 7 chr3 4842388 4842698 -222681880 + AluSx SINE Alu 1 308 -4 4588 91 21 21 chr3 4842698 4842889 -222681689 - PABL_A LTR ERV1 -469 191 1 23 0 0 0 chr3 4843360 4843383 -222681195 + AT_rich Low_complexity Low_complexity 1 23 0 580 99 148 10 chr3 4843388 4843489 -222681089 - FLAM_C SINE Alu -24 119 5 862 131 77 0 chr3 4843538 4843668 -222680910 + FRAM SINE Alu 20 159 -17 253 354 20 0 chr3 4843878 4843977 -222680601 - MIR SINE MIR -154 108 8 479 236 48 36 chr3 4844265 4844430 -222680148 + MER5B DNA MER1_type 11 177 -1 775 143 80 166 chr3 4844657 4844872 -222679706 - MER33 DNA MER1_type -2265 320 145 1735 167 20 7 chr3 4844872 4845166 -222679412 + AluJb SINE Alu 1 298 -14 775 143 80 166 chr3 4845166 4845300 -222679278 - MER33 DNA MER1_type -2440 145 1 8138 14 0 0 chr3 4845536 4846769 -222677809 + L1HS LINE L1 4923 6155 0 226 229 0 0 chr3 4846771 4846832 -222677746 + A-rich Low_complexity Low_complexity 1 61 0 1678 151 17 31 chr3 4847352 4847643 -222676935 + AluJb SINE Alu 9 295 -17 305 265 34 23 chr3 4848637 4848766 -222675812 - MIR SINE MIR -58 150 20 480 218 247 6 chr3 4849200 4849370 -222675208 - MIR SINE MIR -1 261 51 1747 137 17 30 chr3 4849370 4849669 -222674909 - AluSx SINE Alu -9 303 9 8206 61 2 2 chr3 4849979 4851026 -222673552 + L1P LINE L1 1098 2144 -4002 325 116 0 0 chr3 4851360 4851419 -222673159 + Alu SINE Alu 1 40 -261 654 125 0 0 chr3 4851419 4851515 -222673063 + AluSg/x SINE Alu 208 303 -9 180 152 0 0 chr3 4852080 4852113 -222672465 + (CAT)n Simple_repeat Simple_repeat 1 33 0 753 135 0 0 chr3 4852301 4852412 -222672166 + MLT2A1 LTR ERVL 288 398 -46 457 196 17 12 chr3 4852428 4852601 -222671977 + (TA)n Simple_repeat Simple_repeat 2 175 0 310 279 23 0 chr3 4852604 4852690 -222671888 - L1MC4 LINE L1 -1340 6702 6615 453 147 0 0 chr3 4852691 4852786 -222671792 + (TA)n Simple_repeat Simple_repeat 2 96 0 415 73 0 0 chr3 4852794 4852849 -222671729 + MLT2A2 LTR ERVL 399 453 0 3773 177 29 2 chr3 4852851 4853474 -222671104 + MER52-int LTR ERV1 2400 3039 -4052 21 71 0 0 chr3 4853626 4853668 -222670910 + AT_rich Low_complexity Low_complexity 1 42 0 2533 119 3 13 chr3 4853788 4854167 -222670411 + THE1C LTR MaLR 1 375 0 2924 93 82 102 chr3 4854167 4854694 -222669884 + THE1C-int LTR MaLR 1 516 -1064 9235 45 4 0 chr3 4854818 4855948 -222668630 - L1P LINE L1 -1184 4962 3828 26 30 0 0 chr3 4856697 4856730 -222667848 + AT_rich Low_complexity Low_complexity 1 33 0 1863 97 37 23 chr3 4857980 4858280 -222666298 - AluSq SINE Alu -9 304 1 930 213 189 7 chr3 4858838 4859052 -222665526 + MER2 DNA MER2_type 1 283 -61 2335 92 0 0 chr3 4859052 4859347 -222665231 - AluSx SINE Alu -13 299 5 930 213 189 7 chr3 4859347 4859423 -222665155 + MER2 DNA MER2_type 283 344 0 308 64 21 0 chr3 4859423 4859470 -222665108 + (GA)n Simple_repeat Simple_repeat 1 48 0 2948 249 57 23 chr3 4859498 4860528 -222664050 + L1ME1 LINE L1 3292 4356 -1790 2777 231 45 80 chr3 4860572 4860630 -222663948 + L1ME1 LINE L1 5353 5412 -754 1536 193 14 14 chr3 4860630 4860915 -222663663 + AluJb SINE Alu 1 285 -27 2777 231 45 80 chr3 4860915 4860977 -222663601 + L1ME1 LINE L1 5412 5475 -691 1812 165 7 0 chr3 4860977 4861268 -222663310 - AluSg SINE Alu -17 293 1 2777 231 45 80 chr3 4861268 4861771 -222662807 + L1ME1 LINE L1 5475 5994 -172 2215 113 0 0 chr3 4861771 4862064 -222662514 + AluSg SINE Alu 1 293 -17 2777 231 45 80 chr3 4862064 4862247 -222662331 + L1ME1 LINE L1 5994 6111 -55 1817 140 153 42 chr3 4862247 4862320 -222662258 - MSTA LTR MaLR 0 428 365 2463 52 0 29 chr3 4862320 4862626 -222661952 + AluY SINE Alu 1 297 -14 1817 140 153 42 chr3 4862626 4862937 -222661641 - MSTA LTR MaLR -63 365 1 2777 231 45 80 chr3 4862937 4862986 -222661592 + L1ME1 LINE L1 6111 6160 -6 1752 139 58 41 chr3 4863452 4863747 -222660831 + AluSx SINE Alu 1 300 -12 180 77 0 0 chr3 4864086 4864112 -222660466 + (TTCA)n Simple_repeat Simple_repeat 1 26 0 499 258 141 0 chr3 4864200 4864363 -222660215 - MIR SINE MIR -45 217 32 672 178 8 0 chr3 4864703 4864821 -222659757 - MLT1D LTR MaLR 0 505 387 2176 99 51 0 chr3 4865030 4865324 -222659254 - AluSx SINE Alu -3 309 1 426 230 104 22 chr3 4865692 4865827 -222658751 + L2 LINE L2 3122 3267 -5 2272 128 0 0 chr3 4868573 4868878 -222655700 + AluSg SINE Alu 1 305 -5 184 358 0 0 chr3 4869147 4869214 -222655364 - L2 LINE L2 -1 3271 3205 267 315 63 14 chr3 4869364 4869507 -222655071 - MIR SINE MIR -101 161 12 213 121 0 0 chr3 4869545 4869578 -222655000 + (TAGA)n Simple_repeat Simple_repeat 2 34 0 537 188 240 19 chr3 4869756 4869910 -222654668 - MER53 DNA DNA 0 189 2 2330 101 7 0 chr3 4870170 4870478 -222654100 - AluSp SINE Alu -3 310 1 287 246 144 8 chr3 4870748 4870866 -222653712 - L2 LINE L2 -10 3303 3170 845 223 36 16 chr3 4871117 4871310 -222653268 + MER58A DNA MER1_type 19 215 -9 1759 128 7 40 chr3 4871310 4871607 -222652971 + AluJb SINE Alu 13 299 -13 2163 101 0 3 chr3 4872233 4872529 -222652049 + AluSc SINE Alu 1 295 -14 183 302 52 10 chr3 4872908 4873004 -222651574 - L2 LINE L2 -652 2662 2563 322 292 93 83 chr3 4874131 4874432 -222650146 - L2 LINE L2 -9 3263 2960 768 209 12 6 chr3 4874832 4874995 -222649583 + MER5A DNA MER1_type 1 164 -25 1493 182 10 42 chr3 4875031 4875344 -222649234 + AluJo SINE Alu 1 303 -9 1446 145 0 0 chr3 4876439 4876660 -222647918 + L1PB3 LINE L1 5934 6154 0 208 235 123 0 chr3 4877703 4877784 -222646794 - MIR3 SINE MIR -16 192 102 1899 72 103 4 chr3 4879082 4879344 -222645234 - AluSc SINE Alu -17 292 5 22 0 0 0 chr3 4879579 4879601 -222644977 + AT_rich Low_complexity Low_complexity 1 22 0 2350 72 6 28 chr3 4879991 4880309 -222644269 - AluY SINE Alu 0 311 1 240 234 261 0 chr3 4880412 4880523 -222644055 - MIR3 SINE MIR -29 179 40 279 315 109 25 chr3 4880624 4880862 -222643716 - L2 LINE L2 -825 2489 2232 2307 104 0 3 chr3 4881209 4881508 -222643070 - AluSx SINE Alu -14 298 1 320 316 18 9 chr3 4882004 4882118 -222642460 + L2 LINE L2 3158 3272 0 1875 149 3 3 chr3 4882292 4882574 -222642004 - AluSx SINE Alu -30 282 1 890 45 0 0 chr3 4882648 4882758 -222641820 + L1PA4 LINE L1 6046 6155 0 355 283 145 0 chr3 4883210 4883348 -222641230 - MIR SINE MIR -65 197 40 2090 130 0 3 chr3 4884160 4884453 -222640125 + AluSg SINE Alu 3 294 -16 2222 114 23 0 chr3 4884555 4884854 -222639724 + AluJb SINE Alu 1 306 -6 826 169 0 0 chr3 4885438 4885568 -222639010 - FLAM_A SINE Alu -1 132 3 264 350 57 13 chr3 4885651 4885808 -222638770 + MIR3 SINE MIR 45 208 0 1951 223 47 10 chr3 4885966 4886473 -222638105 - L1M4 LINE L1 -1208 4938 4413 1221 181 42 0 chr3 4886491 4886706 -222637872 - MER58A DNA MER1_type 0 224 1 1300 304 170 13 chr3 4886917 4887711 -222636867 - L3 LINE CR1 -107 1470 552 1387 186 50 47 chr3 4888135 4888279 -222636299 + AluJo SINE Alu 1 143 -169 1468 198 0 62 chr3 4888279 4888602 -222635976 + AluSx SINE Alu 1 303 -9 1387 186 50 47 chr3 4888602 4888758 -222635820 + AluJo SINE Alu 143 302 -10 373 157 157 0 chr3 4890287 4890376 -222634202 + MIR SINE MIR 120 222 -40 207 0 0 0 chr3 4890721 4890744 -222633834 + (A)n Simple_repeat Simple_repeat 1 23 0 206 238 16 0 chr3 4891282 4891345 -222633233 + (GTTTG)n Simple_repeat Simple_repeat 1 64 0 23 33 0 0 chr3 4891655 4891685 -222632893 + AT_rich Low_complexity Low_complexity 1 30 0 243 333 0 41 chr3 4892734 4892905 -222631673 + GA-rich Low_complexity Low_complexity 4 167 0 * 251 288 23 11 chr3 4892810 4892916 -222631662 + GA-rich Low_complexity Low_complexity 1 107 0 263 217 0 17 chr3 4893535 4893595 -222630983 - MER91 DNA MER1_type -1 139 81 1899 72 103 4 chr3 4893949 4894211 -222630367 - AluSc SINE Alu -17 292 5 186 310 0 69 chr3 4894307 4894394 -222630184 + MIR SINE MIR 33 113 -149 22 0 0 0 chr3 4894446 4894468 -222630110 + AT_rich Low_complexity Low_complexity 1 22 0 2568 53 0 22 chr3 4894858 4895176 -222629402 - AluY SINE Alu 0 311 1 309 245 96 11 chr3 4895458 4895552 -222629026 - MER69 DNA AcHobo 0 2526 2425 927 209 90 0 chr3 4895552 4895753 -222628825 + L1MD2 LINE L1 5944 6162 -197 2262 121 0 0 chr3 4895753 4896058 -222628520 + AluSp SINE Alu 1 305 -8 282 329 31 38 chr3 4896222 4896383 -222628195 - MIR SINE MIR -55 153 39 281 26 0 26 chr3 4897118 4897157 -222627421 + (CA)n Simple_repeat Simple_repeat 2 39 0 1543 113 0 18 chr3 4900540 4900761 -222623817 - AluSg SINE Alu -93 217 1 257 267 150 0 chr3 4900823 4900943 -222623635 - L1ME LINE L1 -279 5842 5705 189 346 30 20 chr3 4901006 4901107 -222623471 - L2 LINE L2 -2 3270 3169 657 167 79 0 chr3 4901221 4901335 -222623243 + FLAM_C SINE Alu 2 124 -19 396 0 0 0 chr3 4901431 4901475 -222623103 + (TG)n Simple_repeat Simple_repeat 2 45 0 1697 195 7 0 chr3 4901476 4901768 -222622810 - AluJb SINE Alu -18 294 1 2168 98 28 0 chr3 4902515 4902801 -222621777 + AluSx SINE Alu 1 294 -18 1221 181 42 0 chr3 4903229 4903444 -222621134 + MER58A DNA MER1_type 1 224 0 1960 221 47 10 chr3 4903462 4903969 -222620609 + L1M4 LINE L1 4413 4938 -1208 264 350 57 13 chr3 4904127 4904284 -222620294 - MIR3 SINE MIR 0 208 45 826 169 0 0 chr3 4904367 4904497 -222620081 + FLAM_A SINE Alu 3 132 -1 2222 114 23 0 chr3 4905081 4905380 -222619198 - AluJb SINE Alu -6 306 1 2206 106 7 0 chr3 4905484 4905777 -222618801 - AluSx SINE Alu -17 295 1 287 246 144 8 chr3 4906047 4906165 -222618413 - L2 LINE L2 -10 3303 3170 845 223 36 16 chr3 4906416 4906609 -222617969 + MER58A DNA MER1_type 19 215 -9 1759 128 7 40 chr3 4906609 4906906 -222617672 + AluJb SINE Alu 13 299 -13 2163 101 0 3 chr3 4907532 4907828 -222616750 + AluSc SINE Alu 1 295 -14 183 302 52 10 chr3 4908207 4908303 -222616275 - L2 LINE L2 -652 2662 2563 322 292 93 83 chr3 4909430 4909731 -222614847 - L2 LINE L2 -9 3263 2960 768 209 12 6 chr3 4910131 4910294 -222614284 + MER5A DNA MER1_type 1 164 -25 1636 169 6 49 chr3 4910330 4910655 -222613923 + AluJo SINE Alu 1 311 -1 270 0 0 0 chr3 4911671 4911701 -222612877 + (TC)n Simple_repeat Simple_repeat 1 30 0 22 0 0 0 chr3 4912433 4912455 -222612123 + AT_rich Low_complexity Low_complexity 1 22 0 2497 91 0 0 chr3 4912616 4912925 -222611653 - AluSg SINE Alu -1 309 1 257 267 150 0 chr3 4912987 4913107 -222611471 - L1ME LINE L1 -279 5842 5705 201 386 30 0 chr3 4913172 4913273 -222611305 - L2 LINE L2 0 3272 3169 680 149 79 0 chr3 4913387 4913501 -222611077 + FLAM_C SINE Alu 2 124 -19 216 0 0 0 chr3 4913597 4913621 -222610957 + (TG)n Simple_repeat Simple_repeat 2 25 0 1697 195 7 0 chr3 4913622 4913914 -222610664 - AluJb SINE Alu -18 294 1 2168 98 28 0 chr3 4914662 4914948 -222609630 + AluSx SINE Alu 1 294 -18 24 53 0 0 chr3 4915786 4915824 -222608754 + AT_rich Low_complexity Low_complexity 1 38 0 239 119 0 51 chr3 4917895 4917954 -222606624 + (CTA)n Simple_repeat Simple_repeat 1 56 0 383 246 53 18 chr3 4918577 4918691 -222605887 + MIR3 SINE MIR 14 131 -77 1871 146 35 0 chr3 4919715 4919886 -222604692 - AluSx SINE Alu -14 298 112 414 0 0 0 chr3 4919886 4919932 -222604646 + (TTA)n Simple_repeat Simple_repeat 2 47 0 1871 146 35 0 chr3 4919932 4920048 -222604530 - AluSx SINE Alu -200 112 1 253 109 455 0 chr3 4920437 4920492 -222604086 + MADE1 DNA Mariner 1 80 0 2193 100 7 0 chr3 4920943 4921254 -222603324 + AluSx SINE Alu 1 313 0 1934 163 0 0 chr3 4921273 4921561 -222603017 - AluJb SINE Alu -19 293 6 986 124 0 7 chr3 4921561 4921698 -222602880 - AluJb SINE Alu -176 136 1 301 136 0 0 chr3 4921698 4921742 -222602836 - Alu SINE Alu -258 44 1 * 560 134 93 64 chr3 4921742 4921913 -222602665 + Charlie5 DNA MER1_type 2445 2620 0 479 236 48 36 chr3 4922140 4922305 -222602273 - MER5B DNA MER1_type -1 177 11 238 301 27 0 chr3 4922600 4922673 -222601905 + MIR SINE MIR 8 82 -180 862 131 77 0 chr3 4922909 4923039 -222601539 - FRAM SINE Alu -17 159 20 555 109 148 10 chr3 4923088 4923189 -222601389 + FLAM_C SINE Alu 5 119 -24 23 0 0 0 chr3 4923194 4923217 -222601361 + AT_rich Low_complexity Low_complexity 1 23 0 4655 90 17 21 chr3 4923688 4923882 -222600696 + PABL_A LTR ERV1 1 194 -466 2261 94 0 7 chr3 4923882 4924179 -222600399 - AluSx SINE Alu -17 295 1 4655 90 17 21 chr3 4924179 4924638 -222599940 + PABL_A LTR ERV1 194 651 -9 1244 148 0 0 chr3 4926074 4926257 -222598321 - AluSg/x SINE Alu -16 296 114 195 298 48 24 chr3 4926426 4926510 -222598068 + MIR SINE MIR 155 240 -22 2004 145 0 16 chr3 4926532 4926835 -222597743 - AluSx SINE Alu -14 298 1 29 0 0 0 chr3 4926835 4926864 -222597714 + AT_rich Low_complexity Low_complexity 1 29 0 515 277 141 5 chr3 4927384 4927590 -222596988 - MIR SINE MIR -6 256 23 1595 142 47 4 chr3 4927606 4927972 -222596606 + LTR47A LTR ERVL 1 436 -16 1818 169 156 5 chr3 4927972 4928344 -222596234 - MSTA LTR MaLR 0 428 1 1595 142 47 4 chr3 4928344 4928362 -222596216 + LTR47A LTR ERVL 436 452 0 316 293 75 34 chr3 4928376 4928523 -222596055 + LTR47A-int LTR ERVL 15 167 -5176 685 171 43 41 chr3 4928665 4928859 -222595719 + LTR49-int LTR ERV1 2009 2290 -2590 1570 181 4 0 chr3 4928876 4929157 -222595421 + MER41B LTR ERV1 1 282 -353 4746 221 83 39 chr3 4929160 4929381 -222595197 + LTR49-int LTR ERV1 891 1101 -3090 836 134 0 30 chr3 4929381 4929539 -222595039 + FLAM_C SINE Alu 1 154 0 4746 221 83 39 chr3 4929539 4930538 -222594040 + LTR49-int LTR ERV1 1101 2165 -2026 2207 64 37 7 chr3 4930538 4930833 -222593745 + MLT2A1 LTR ERVL 1 304 -140 261 0 0 0 chr3 4930853 4930882 -222593696 + (CA)n Simple_repeat Simple_repeat 2 30 0 390 36 18 18 chr3 4930886 4930941 -222593637 + MLT2A1 LTR ERVL 399 453 0 4568 148 38 67 chr3 4930942 4932423 -222592155 + LTR49-int LTR ERV1 4411 6064 -258 2338 145 133 2 chr3 4932435 4932835 -222591743 + LTR47A LTR ERVL 1 452 0 244 206 72 52 chr3 4934274 4934371 -222590207 + MLT1J2 LTR MaLR 42 140 -310 1519 174 98 113 chr3 4934639 4934853 -222589725 + MLT1D LTR MaLR 1 217 -288 3356 160 6 2 chr3 4934853 4935378 -222589200 + MER1A DNA MER1_type 1 527 0 1519 174 98 113 chr3 4935378 4935676 -222588902 + MLT1D LTR MaLR 217 505 0 323 291 122 17 chr3 4935766 4935938 -222588640 - MIR SINE MIR 0 262 73 3887 113 24 5 chr3 4936009 4936600 -222587978 + LTR43 LTR ERV1 1 602 0 216 318 53 60 chr3 4937223 4937295 -222587283 + MIR SINE MIR 72 143 -119 2288 83 48 0 chr3 4937295 4937584 -222586994 + AluSc SINE Alu 1 303 -6 216 318 53 60 chr3 4937584 4937662 -222586916 + MIR SINE MIR 143 221 -41 239 329 0 37 chr3 4938197 4938279 -222586299 + L2 LINE L2 3192 3270 -2 795 233 30 40 chr3 4938532 4938734 -222585844 + MIR SINE MIR 37 236 -26 1509 199 57 37 chr3 4938789 4938899 -222585679 + MLT2D LTR ERVL 1 107 -307 2370 60 0 13 chr3 4938899 4939198 -222585380 - AluY SINE Alu -16 295 1 1509 199 57 37 chr3 4939198 4939308 -222585270 + MLT2D LTR ERVL 107 213 -201 2488 193 23 69 chr3 4939308 4939949 -222584629 - LTR9 LTR ERV1 0 612 1 1509 199 57 37 chr3 4939949 4940130 -222584448 + MLT2D LTR ERVL 213 411 -3 1016 254 81 47 chr3 4940132 4940577 -222584001 + MLT1D LTR MaLR 46 505 0 2286 110 3 0 chr3 4941968 4942278 -222582300 + AluSx SINE Alu 1 311 -1 844 183 56 5 chr3 4942278 4942475 -222582103 + L1MD2 LINE L1 6152 6358 -1 259 348 38 52 chr3 4943419 4943629 -222580949 + L2 LINE L2 2564 2770 -544 557 268 87 70 chr3 4943821 4944120 -222580458 + MER5C DNA MER1_type 21 324 0 525 247 195 0 chr3 4944396 4944570 -222580008 + MIR SINE MIR 49 256 -6 3241 160 30 3 chr3 4944625 4945231 -222579347 - L1MB2 LINE L1 0 6171 5550 2135 116 3 16 chr3 4945232 4945542 -222579036 - AluSx SINE Alu -3 309 4 251 253 24 60 chr3 4946330 4946413 -222578165 + MIR SINE MIR 48 127 -81 2428 77 0 3 chr3 4946517 4946827 -222577751 + AluY SINE Alu 1 309 -2 575 177 9 18 chr3 4947074 4947187 -222577391 - MER58A DNA MER1_type 0 112 1 2073 105 28 0 chr3 4947615 4947901 -222576677 - AluSx SINE Alu -18 294 1 1819 142 7 0 chr3 4948342 4948624 -222575954 - AluSg SINE Alu -15 295 12 1527 198 3 36 chr3 4948847 4949155 -222575423 + AluJb SINE Alu 1 298 -14 870 168 0 0 chr3 4949199 4949324 -222575254 + AluJb SINE Alu 1 125 -187 920 107 15 7 chr3 4949952 4950797 -222573781 + HSATII Satellite Satellite 1 851 0 869 74 17 51 chr3 4950823 4950998 -222573580 + HSATII Satellite Satellite 1 169 -1 965 116 12 14 chr3 4951024 4952573 -222572005 + HSATII Satellite Satellite 1 1545 0 986 114 14 16 chr3 4952599 4954287 -222570291 + HSATII Satellite Satellite 1 1685 -27 965 117 8 15 chr3 4954309 4955979 -222568599 + HSATII Satellite Satellite 1 1658 -18 1015 88 6 18 chr3 4956019 4956190 -222568388 + HSATII Satellite Satellite 1 169 -1 953 129 3 16 chr3 4956539 4956894 -222567684 + HSATII Satellite Satellite 1 350 -1 998 118 12 14 chr3 4956924 4960156 -222564422 + HSATII Satellite Satellite 1 3225 -1 932 102 16 13 chr3 4960186 4960694 -222563884 + HSATII Satellite Satellite 1 509 -47 793 110 0 24 chr3 4960803 4961017 -222563561 + HSATII Satellite Satellite 1 208 -18 959 110 10 18 chr3 4961057 4962641 -222561937 + HSATII Satellite Satellite 1 1572 -121 977 117 14 14 chr3 4962663 4965725 -222558853 + HSATII Satellite Satellite 1 3060 -23 932 126 18 20 chr3 4965747 4966339 -222558239 + HSATII Satellite Satellite 1 590 0 1036 110 11 15 chr3 4966362 4971349 -222553229 + HSATII Satellite Satellite 1 4967 -1 998 108 12 9 chr3 4971379 4974452 -222550126 + HSATII Satellite Satellite 1 3084 -2 967 110 15 17 chr3 4974486 4976217 -222548361 + HSATII Satellite Satellite 1 1726 -3 977 113 13 12 chr3 4976231 4976736 -222547842 + HSATII Satellite Satellite 1 505 -1 959 111 16 12 chr3 4976774 4978381 -222546197 + HSATII Satellite Satellite 1 1614 0 959 107 7 16 chr3 4978404 4979520 -222545058 + HSATII Satellite Satellite 1 1105 -121 953 121 16 15 chr3 4979542 4981442 -222543136 + HSATII Satellite Satellite 1 1901 0 959 110 5 14 chr3 4981465 4982127 -222542451 + HSATII Satellite Satellite 1 656 -9 783 117 18 23 chr3 4982158 4982329 -222542249 + HSATII Satellite Satellite 1 170 0 911 122 12 19 chr3 4982354 4983196 -222541382 + HSATII Satellite Satellite 1 836 0 998 115 15 13 chr3 4983379 4987034 -222537544 + HSATII Satellite Satellite 1 3663 0 998 115 12 12 chr3 4987057 4989847 -222534731 + HSATII Satellite Satellite 1 2788 -99 386 300 55 9 chr3 4990328 4990438 -222534140 + L2 LINE L2 3153 3267 -5 1805 132 69 0 chr3 4990561 4990850 -222533728 - AluSx SINE Alu -3 309 1 477 290 95 68 chr3 4991021 4991242 -222533336 - MIR SINE MIR -34 228 2 359 337 53 60 chr3 4991243 4991633 -222532945 + L2 LINE L2 2686 3074 -198 1105 184 120 5 chr3 4993072 4993289 -222531289 + AluJb SINE Alu 58 299 -13 1702 187 33 3 chr3 4993430 4993729 -222530849 + AluJo SINE Alu 1 308 -4 875 144 0 41 chr3 4998722 4998868 -222525710 + AluSg/x SINE Alu 137 276 -36 753 215 7 0 chr3 4999123 4999272 -222525306 - L1 LINE L1 -1063 5083 4934 943 227 20 49 chr3 5000152 5000399 -222524179 + MIR SINE MIR 2 241 -21 1096 157 8 44 chr3 5001449 5001697 -222522881 - AluJb SINE Alu -5 307 69 22 56 0 0 chr3 5002005 5002041 -222522537 + GC_rich Low_complexity Low_complexity 1 36 0 21 0 0 0 chr3 5002083 5002104 -222522474 + AT_rich Low_complexity Low_complexity 1 21 0 24 0 0 0 chr3 5002108 5002132 -222522446 + GC_rich Low_complexity Low_complexity 1 24 0 36 26 0 0 chr3 5002177 5002215 -222522363 + GC_rich Low_complexity Low_complexity 1 38 0 487 125 0 12 chr3 5003631 5003711 -222520867 + AluS SINE Alu 227 305 -6 22 0 0 0 chr3 5003872 5003894 -222520684 + AT_rich Low_complexity Low_complexity 1 22 0 320 122 3 0 chr3 5003995 5004053 -222520525 + Alu SINE Alu 251 298 -4 2022 121 4 4 chr3 5004153 5004455 -222520123 + AluSx SINE Alu 1 302 0 664 148 16 0 chr3 5004455 5004583 -222519995 + L1MB8 LINE L1 5187 5316 -830 833 199 6 0 chr3 5004585 5004741 -222519837 + FRAM SINE Alu 1 40 0 4484 182 19 25 chr3 5004744 5005624 -222518954 + L1MB8 LINE L1 5304 6178 0 2004 137 0 22 chr3 5005905 5006220 -222518358 - AluSx SINE Alu -2 310 3 216 165 22 114 chr3 5006335 5006440 -222518138 - MIR SINE MIR -62 146 56 21 36 0 0 chr3 5006642 5006670 -222517908 + AT_rich Low_complexity Low_complexity 1 28 0 1845 158 18 0 chr3 5006674 5006958 -222517620 - AluJo SINE Alu -23 289 1 858 168 0 0 chr3 5007818 5007943 -222516635 - AluJb SINE Alu -187 125 1 1523 192 3 36 chr3 5007987 5008295 -222516283 - AluJo SINE Alu -14 298 1 2266 104 0 0 chr3 5008518 5008816 -222515762 + AluSx SINE Alu 12 309 -3 670 178 8 0 chr3 5009025 5009143 -222515435 + MLT1D LTR MaLR 387 505 0 546 278 131 0 chr3 5009483 5009659 -222514919 + MIR SINE MIR 32 230 -32 180 77 0 0 chr3 5009734 5009760 -222514818 + (TGAA)n Simple_repeat Simple_repeat 1 26 0 1738 139 58 41 chr3 5010099 5010394 -222514184 - AluSx SINE Alu -12 300 1 2799 229 23 76 chr3 5010860 5010909 -222513669 - L1ME1 LINE L1 -6 6160 6110 2008 138 153 42 chr3 5010909 5011220 -222513358 + MSTA LTR MaLR 1 365 -63 2441 49 0 30 chr3 5011220 5011525 -222513053 - AluY SINE Alu -15 296 1 2008 138 153 42 chr3 5011525 5011598 -222512980 + MSTA LTR MaLR 365 428 0 2799 229 23 76 chr3 5011598 5011781 -222512797 - L1ME1 LINE L1 -56 6110 5919 2196 112 0 0 chr3 5011781 5012075 -222512503 - AluSg SINE Alu -16 294 1 2799 229 23 76 chr3 5012075 5012578 -222512000 - L1ME1 LINE L1 -247 5919 5391 2060 131 7 0 chr3 5012578 5012869 -222511709 + AluSg SINE Alu 1 293 -17 2799 229 23 76 chr3 5012869 5012928 -222511650 - L1ME1 LINE L1 -775 5391 5408 1508 175 39 39 chr3 5012928 5013213 -222511365 - AluJb SINE Alu -27 285 1 2799 229 23 76 chr3 5013213 5013271 -222511307 - L1ME1 LINE L1 -757 5409 5350 3013 251 57 23 chr3 5013315 5014345 -222510233 - L1ME1 LINE L1 -1790 4356 3292 272 70 23 0 chr3 5014373 5014416 -222510162 + (TC)n Simple_repeat Simple_repeat 1 44 0 1022 210 189 7 chr3 5014416 5014492 -222510086 - MER2 DNA MER2_type 0 344 283 2327 94 0 0 chr3 5014492 5014791 -222509787 + AluSx SINE Alu 5 303 -9 1022 210 189 7 chr3 5014791 5015005 -222509573 - MER2 DNA MER2_type -61 283 1 1798 100 37 23 chr3 5015563 5015863 -222508715 + AluSq SINE Alu 1 304 -9 4654 90 17 21 chr3 5017470 5017929 -222506649 - PABL_A LTR ERV1 -9 651 194 2233 94 0 7 chr3 5017929 5018226 -222506352 + AluSx SINE Alu 1 295 -17 4654 90 17 21 chr3 5018226 5018420 -222506158 - PABL_A LTR ERV1 -466 194 1 23 0 0 0 chr3 5018891 5018914 -222505664 + AT_rich Low_complexity Low_complexity 1 23 0 598 109 148 10 chr3 5018919 5019020 -222505558 - FLAM_C SINE Alu -24 119 5 854 131 77 0 chr3 5019069 5019199 -222505379 + FRAM SINE Alu 20 159 -17 264 375 17 0 chr3 5019388 5019508 -222505070 - MIR SINE MIR -133 129 8 533 236 48 36 chr3 5019803 5019968 -222504610 + MER5B DNA MER1_type 11 177 -1 833 129 103 189 chr3 5020195 5020410 -222504168 - MER33 DNA MER1_type -2265 320 145 1720 167 20 7 chr3 5020410 5020704 -222503874 + AluJb SINE Alu 1 298 -14 833 129 103 189 chr3 5020704 5020838 -222503740 - MER33 DNA MER1_type -2440 145 1 8077 14 2 0 chr3 5021074 5022304 -222502274 + L1HS LINE L1 4923 6154 -1 201 39 0 0 chr3 5022340 5022366 -222502212 + (A)n Simple_repeat Simple_repeat 1 26 0 1702 144 17 31 chr3 5022886 5023177 -222501401 + AluJb SINE Alu 9 295 -17 575 204 160 18 chr3 5024562 5024787 -222499791 - MER112 DNA MER1_type 0 260 4 1676 209 107 43 chr3 5025388 5025900 -222498678 - MER90 LTR ERV1 0 614 70 2096 141 13 0 chr3 5026253 5026558 -222498020 - AluJo SINE Alu -3 309 1 206 292 79 22 chr3 5026689 5026778 -222497800 + MIR3 SINE MIR 90 183 -25 1917 233 175 50 chr3 5027206 5028125 -222496453 - HAL1 LINE L1 -134 2373 1340 469 321 77 9 chr3 5028127 5028466 -222496112 - HAL1 LINE L1 -1216 1291 930 492 288 113 19 chr3 5028596 5028808 -222495770 - HAL1 LINE L1 -1842 665 434 204 342 57 19 chr3 5029150 5029308 -222495270 + L2 LINE L2 2917 3080 -192 1871 154 3 13 chr3 5029325 5029636 -222494942 - AluJb SINE Alu -4 308 1 2317 67 35 0 chr3 5030409 5030692 -222493886 + AluY SINE Alu 1 293 -18 484 227 302 0 chr3 5030694 5030866 -222493712 + MIR SINE MIR 29 252 -10 220 214 18 18 chr3 5030910 5030966 -222493612 + (CA)n Simple_repeat Simple_repeat 1 56 0 477 288 41 7 chr3 5031013 5031159 -222493419 - MER117 DNA MER1_type -36 161 11 374 352 49 6 chr3 5031461 5031623 -222492955 - MIR SINE MIR -13 249 81 713 254 215 0 chr3 5031891 5032096 -222492482 - MIR SINE MIR -8 254 6 494 306 0 0 chr3 5032815 5032926 -222491652 + MER81 DNA DNA 4 114 0 273 249 239 23 chr3 5033088 5033204 -222491374 - L1ME LINE L1 -577 5544 5454 1731 149 72 0 chr3 5033204 5033480 -222491098 + AluSx SINE Alu 1 296 -16 273 249 239 23 chr3 5033480 5033603 -222490975 - L1ME LINE L1 -667 5454 5254 265 368 60 8 chr3 5034604 5034721 -222489857 - L2 LINE L2 0 3313 3191 2430 69 3 0 chr3 5034831 5035135 -222489443 + AluY SINE Alu 1 305 -6 258 282 0 113 chr3 5035804 5035928 -222488650 + MIR3 SINE MIR 87 196 -12 428 255 135 20 chr3 5036438 5036638 -222487940 + MIR SINE MIR 31 253 -9 24 32 0 0 chr3 5038412 5038443 -222486135 + AT_rich Low_complexity Low_complexity 1 31 0 186 43 0 0 chr3 5041464 5041487 -222483091 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 1055 130 0 34 chr3 5041798 5041975 -222482603 - AluSg/x SINE Alu -15 294 124 256 267 67 33 chr3 5045128 5045218 -222479360 - MIR SINE MIR -157 105 13 1890 151 18 0 chr3 5045458 5045743 -222478835 - AluJb SINE Alu -14 298 9 235 254 211 7 chr3 5046639 5046781 -222477797 + L1MC/D LINE L1 4531 4701 -1445 275 282 57 0 chr3 5046818 5046942 -222477636 + L1MC/D LINE L1 5695 5825 -1983 245 295 105 11 chr3 5047529 5047624 -222476954 + L3 LINE CR1 1196 1299 -278 1688 188 40 3 chr3 5047715 5048040 -222476538 - MER1B DNA MER1_type 0 337 1 563 280 13 13 chr3 5048293 5048443 -222476135 - MIR SINE MIR -79 183 34 360 232 36 94 chr3 5048447 5048476 -222476102 - L2 LINE L2 -2 3311 3282 2557 98 30 6 chr3 5048476 5048842 -222475736 + THE1C LTR MaLR 1 375 0 360 232 36 94 chr3 5048842 5048950 -222475628 - L2 LINE L2 -31 3282 3182 26 0 0 0 chr3 5050011 5050037 -222474541 + AT_rich Low_complexity Low_complexity 1 26 0 547 300 143 29 chr3 5050308 5050852 -222473726 + L1MC4a LINE L1 4633 5238 -908 348 236 183 21 chr3 5050888 5051079 -222473499 + L1MC4a LINE L1 5296 5517 -2291 1688 80 0 0 chr3 5051121 5051334 -222473244 - AluSg SINE Alu -97 213 1 292 211 273 19 chr3 5051469 5051630 -222472948 + L1MC4a LINE L1 5748 5949 -1859 3374 133 107 6 chr3 5053482 5054116 -222470462 + Tigger1 DNA MER2_type 63 760 -1658 * 7682 127 30 8 chr3 5054107 5055419 -222469159 + Tigger1 DNA MER2_type 1079 2418 0 2365 123 5 32 chr3 5055748 5056122 -222468456 + THE1B LTR MaLR 1 364 0 21 0 0 0 chr3 5059539 5059560 -222465018 + AT_rich Low_complexity Low_complexity 1 21 0 1771 190 7 3 chr3 5059637 5059932 -222464646 - AluSx SINE Alu -16 296 1 28 0 0 0 chr3 5059980 5060008 -222464570 + AT_rich Low_complexity Low_complexity 1 28 0 390 363 57 6 chr3 5060116 5060273 -222464305 + MIR3 SINE MIR 20 184 -24 2160 112 3 0 chr3 5060461 5060756 -222463822 - AluSp SINE Alu -17 296 1 275 87 0 43 chr3 5061368 5061414 -222463164 - L2 LINE L2 -75 3238 3195 527 281 67 12 chr3 5062126 5062290 -222462288 + MER5B DNA MER1_type 6 178 0 2086 121 0 0 chr3 5062704 5063009 -222461569 - AluSx SINE Alu 0 305 1 2223 112 0 13 chr3 5064010 5064313 -222460265 + AluSx SINE Alu 1 299 -13 1905 187 74 71 chr3 5065105 5065700 -222458878 - L1MC3 LINE L1 0 7785 7189 258 262 24 12 chr3 5065701 5065785 -222458793 - MLT1F1 LTR MaLR -443 124 40 276 163 0 0 chr3 5065789 5065838 -222458740 - L1MC3 LINE L1 -692 7093 7045 329 365 0 0 chr3 5065838 5065953 -222458625 + MIR3 SINE MIR 71 185 -23 2290 112 0 0 chr3 5066109 5066412 -222458166 + AluSx SINE Alu 1 303 -9 23 0 0 0 chr3 5066440 5066463 -222458115 + AT_rich Low_complexity Low_complexity 1 23 0 920 146 189 5 chr3 5066626 5066811 -222457767 + MER20 DNA MER1_type 1 219 0 203 79 26 0 chr3 5067654 5067692 -222456886 + (CAAAA)n Simple_repeat Simple_repeat 2 40 0 383 301 155 14 chr3 5068689 5068908 -222455670 + MIR SINE MIR 13 262 0 192 293 35 0 chr3 5069621 5069679 -222454899 - MIR3 SINE MIR -37 171 112 231 368 42 0 chr3 5070407 5070502 -222454076 + MIR3 SINE MIR 68 166 -42 207 0 0 0 chr3 5071627 5071650 -222452928 + (TA)n Simple_repeat Simple_repeat 2 24 0 1805 164 7 20 chr3 5071653 5071951 -222452627 - AluJb SINE Alu -18 294 1 1108 265 70 26 chr3 5071980 5072545 -222452033 + L2 LINE L2 2570 3154 -159 21 36 0 0 chr3 5072578 5072606 -222451972 + AT_rich Low_complexity Low_complexity 1 28 0 199 298 0 0 chr3 5072683 5072740 -222451838 + L2 LINE L2 3255 3311 -2 305 195 26 26 chr3 5072755 5072832 -222451746 + MLT1L LTR MaLR 3 79 -536 365 303 48 0 chr3 5073438 5073603 -222450975 + Charlie8 DNA MER1_type 85 257 -2160 468 0 0 0 chr3 5073617 5073669 -222450909 + (TG)n Simple_repeat Simple_repeat 2 53 0 210 296 59 89 chr3 5074850 5074985 -222449593 + MIR SINE MIR 17 147 -61 626 242 65 107 chr3 5074994 5075349 -222449229 - MLT1I LTR MaLR -7 402 63 201 237 0 0 chr3 5075441 5075500 -222449078 + (TA)n Simple_repeat Simple_repeat 1 59 0 300 290 30 53 chr3 5076228 5076359 -222448219 - L2 LINE L2 -4 3309 3182 293 235 43 17 chr3 5076891 5077006 -222447572 + L1ME LINE L1 5630 5747 -374 330 267 0 11 chr3 5077015 5077105 -222447473 + LTR67 LTR ERVL 460 548 -9 459 63 0 0 chr3 5077105 5077168 -222447410 + (CA)n Simple_repeat Simple_repeat 2 64 0 31 76 0 0 chr3 5077418 5077484 -222447094 + AT_rich Low_complexity Low_complexity 1 66 0 285 296 61 17 chr3 5077836 5077951 -222446627 - MIR SINE MIR -6 256 137 22 35 0 0 chr3 5078429 5078458 -222446120 + AT_rich Low_complexity Low_complexity 1 29 0 811 211 80 0 chr3 5080038 5080213 -222444365 + MLT1D LTR MaLR 4 192 -313 1256 191 17 39 chr3 5080213 5080444 -222444134 + AluJo SINE Alu 1 226 -86 648 222 63 16 chr3 5081349 5081538 -222443040 + MIR SINE MIR 44 241 -21 1378 166 115 86 chr3 5081556 5082073 -222442505 + LTR36 LTR ERV1 1 611 0 730 236 220 0 chr3 5082235 5082693 -222441885 + LTR50 LTR ERVL 140 795 0 960 287 89 2 chr3 5082770 5083164 -222441414 + L1ME3A LINE L1 5291 5718 -452 422 78 16 0 chr3 5083164 5083228 -222441350 + MER41B LTR ERV1 481 545 -90 1061 242 66 44 chr3 5083274 5083702 -222440876 + L1ME3A LINE L1 5730 6162 -8 2243 123 3 0 chr3 5083801 5084110 -222440468 - AluSq SINE Alu -3 310 1 209 373 15 0 chr3 5084277 5084344 -222440234 + L2 LINE L2 3198 3265 -7 199 208 260 39 chr3 5084717 5084794 -222439784 + MIR3 SINE MIR 63 156 -52 387 256 53 0 chr3 5084850 5084983 -222439595 - MER117 DNA MER1_type -56 141 2 231 291 0 0 chr3 5084985 5085040 -222439538 + MIR3 SINE MIR 154 208 0 327 274 183 7 chr3 5085947 5086100 -222438478 + MIR3 SINE MIR 15 194 -14 186 283 170 28 chr3 5086476 5086582 -222437996 + MIR3 SINE MIR 84 204 -4 220 324 14 0 chr3 5086827 5086901 -222437677 + (TA)n Simple_repeat Simple_repeat 1 75 0 1889 197 16 101 chr3 5087081 5087628 -222436950 - MLT1D LTR MaLR -2 503 3 360 364 23 6 chr3 5087720 5087896 -222436682 - MIR3 SINE MIR -13 195 17 216 171 0 0 chr3 5088271 5088306 -222436272 + (TCCA)n Simple_repeat Simple_repeat 3 37 0 216 210 65 32 chr3 5088334 5088396 -222436182 - L2 LINE L2 -42 3230 3167 298 347 200 7 chr3 5088416 5088566 -222436012 + MER5A DNA MER1_type 1 179 -10 2738 103 8 5 chr3 5089463 5089850 -222434728 - L1PB1 LINE L1 -1 6150 5763 23 0 0 0 chr3 5089909 5089932 -222434646 + AT_rich Low_complexity Low_complexity 1 23 0 438 333 0 0 chr3 5089940 5090051 -222434527 - L2 LINE L2 -5 3267 3157 1071 103 0 7 chr3 5091168 5091314 -222433264 + AluSg/x SINE Alu 135 279 -30 415 253 114 32 chr3 5091709 5091867 -222432711 + MIR3 SINE MIR 38 208 0 3242 138 14 68 chr3 5092033 5092234 -222432344 + LTR26B LTR ERV1 4 214 -317 1604 174 19 47 chr3 5092234 5092551 -222432027 + AluJb SINE Alu 1 308 -4 3242 138 14 68 chr3 5092551 5092907 -222431671 + LTR26B LTR ERV1 214 531 0 817 258 33 16 chr3 5093208 5093390 -222431188 - MER5A DNA MER1_type -4 185 1 1154 164 116 58 chr3 5093475 5093786 -222430792 + MLT1D LTR MaLR 12 340 -165 261 119 48 0 chr3 5093762 5093804 -222430774 - MLT1D LTR MaLR -154 351 308 * 580 294 99 14 chr3 5094633 5094854 -222429724 - MIR SINE MIR -5 257 18 2426 96 0 0 chr3 5095029 5095341 -222429237 - AluSx SINE Alu 0 312 1 993 215 45 0 chr3 5095862 5096062 -222428516 - MER3 DNA MER1_type 0 209 1 311 301 68 20 chr3 5096308 5096454 -222428124 - MIR SINE MIR -61 201 49 337 258 13 0 chr3 5096455 5096542 -222428036 - MIR SINE MIR -92 116 40 442 306 25 13 chr3 5096723 5096880 -222427698 - MIR SINE MIR 0 262 104 5415 129 16 5 chr3 5097934 5098750 -222425828 + L1MC1 LINE L1 5509 6333 0 542 239 43 111 chr3 5099020 5099162 -222425416 + Charlie8 DNA MER1_type 2 123 -218 2145 109 0 50 chr3 5099162 5099483 -222425095 - AluSx SINE Alu -3 309 5 542 239 43 111 chr3 5099483 5099574 -222425004 + Charlie8 DNA MER1_type 123 219 -122 272 375 13 33 chr3 5099877 5100029 -222424549 + MIR3 SINE MIR 21 169 -39 345 232 72 65 chr3 5100085 5100223 -222424355 - MER103 DNA DNA -18 148 10 621 317 176 32 chr3 5101329 5101670 -222422908 + L3 LINE CR1 751 1140 -437 2433 121 22 25 chr3 5101673 5102038 -222422540 - THE1B LTR MaLR 0 364 1 189 288 225 0 chr3 5102130 5102210 -222422368 + L3 LINE CR1 1188 1285 -292 1274 177 42 103 chr3 5102282 5102593 -222421985 - AluJo SINE Alu -20 292 1 1721 170 10 10 chr3 5102608 5102908 -222421670 - AluJo SINE Alu -12 300 1 1928 147 3 13 chr3 5103842 5104155 -222420423 + AluJb SINE Alu 1 310 -2 297 320 70 31 chr3 5104390 5104518 -222420060 - L2 LINE L2 -8 3264 3132 2351 132 33 33 chr3 5105289 5105583 -222418995 + THE1B LTR MaLR 1 297 -67 1994 125 3 14 chr3 5105583 5105880 -222418698 - AluSx SINE Alu -18 294 1 2351 132 33 33 chr3 5105880 5105949 -222418629 + THE1B LTR MaLR 296 364 0 4922 172 27 34 chr3 5107473 5108859 -222415719 - L1MB3 LINE L1 -2 6181 4810 193 276 0 52 chr3 5108969 5109027 -222415551 - MIR3 SINE MIR -146 62 8 439 239 92 23 chr3 5109198 5109328 -222415250 + MLT1J2 LTR MaLR 37 175 -275 349 289 47 57 chr3 5109667 5109878 -222414700 - MLT1I LTR MaLR -26 383 175 2055 109 35 109 chr3 5109878 5110283 -222414295 - THE1C LTR MaLR 0 375 1 747 290 136 18 chr3 5110292 5110733 -222413845 + L2 LINE L2 2821 3313 0 407 300 110 11 chr3 5112051 5112252 -222412326 - MIR SINE MIR -25 237 19 2249 185 41 30 chr3 5113615 5114079 -222410499 + MLT2B1 LTR ERVL 1 469 -51 273 196 21 93 chr3 5114118 5114215 -222410363 - L1MC4 LINE L1 -1339 6703 6614 * 276 170 0 130 chr3 5114129 5114229 -222410349 + L1MC4 LINE L1 6617 6703 -1339 213 175 0 0 chr3 5114229 5114269 -222410309 + (TATG)n Simple_repeat Simple_repeat 4 43 0 422 16 0 109 chr3 5114272 5114336 -222410242 + MLT2B1 LTR ERVL 464 520 0 690 297 72 43 chr3 5114429 5114869 -222409709 - Charlie8 DNA MER1_type -2145 272 1 21 0 0 0 chr3 5115353 5115374 -222409204 + AT_rich Low_complexity Low_complexity 1 21 0 252 0 0 0 chr3 5116695 5116723 -222407855 + (TG)n Simple_repeat Simple_repeat 2 29 0 243 0 0 0 chr3 5116722 5116749 -222407829 + (TA)n Simple_repeat Simple_repeat 2 28 0 * 1883 169 7 0 chr3 5116749 5117056 -222407522 - AluJb SINE Alu -3 309 1 27 49 0 0 chr3 5117056 5117097 -222407481 + AT_rich Low_complexity Low_complexity 1 41 0 798 188 17 104 chr3 5117515 5117755 -222406823 - MER20 DNA MER1_type 0 219 1 1335 215 87 36 chr3 5117876 5118282 -222406296 + MER113 DNA MER1_type? 3 440 -81 4294 139 67 10 chr3 5118282 5118970 -222405608 + LTR8A LTR ERV1 1 727 0 1335 215 87 36 chr3 5118970 5119056 -222405522 + MER113 DNA MER1_type? 440 520 -1 220 286 48 24 chr3 5119287 5119371 -222405207 + MIR SINE MIR 155 240 -22 1988 145 0 16 chr3 5119393 5119696 -222404882 - AluSx SINE Alu -14 298 1 28 0 0 0 chr3 5119696 5119724 -222404854 + AT_rich Low_complexity Low_complexity 1 28 0 577 277 141 5 chr3 5120240 5120446 -222404132 - MIR SINE MIR -6 256 23 1590 142 47 4 chr3 5120462 5120828 -222403750 + LTR47A LTR ERVL 1 436 -16 1953 169 156 5 chr3 5120828 5121200 -222403378 - MSTA LTR MaLR 0 428 1 1590 142 47 4 chr3 5121200 5121218 -222403360 + LTR47A LTR ERVL 436 452 0 307 293 75 34 chr3 5121232 5121379 -222403199 + LTR47A-int LTR ERVL 15 167 -5176 699 171 43 41 chr3 5121521 5121715 -222402863 + LTR49-int LTR ERV1 2009 2290 -2590 1570 181 4 0 chr3 5121732 5122013 -222402565 + MER41B LTR ERV1 1 282 -353 4759 221 82 41 chr3 5122016 5122237 -222402341 + LTR49-int LTR ERV1 891 1101 -3090 892 129 0 30 chr3 5122237 5122395 -222402183 + FLAM_C SINE Alu 1 154 0 4759 221 82 41 chr3 5122395 5123394 -222401184 + LTR49-int LTR ERV1 1101 2165 -2026 2202 64 37 7 chr3 5123394 5123689 -222400889 + MLT2A1 LTR ERVL 1 304 -140 261 0 0 0 chr3 5123709 5123738 -222400840 + (CA)n Simple_repeat Simple_repeat 2 30 0 394 36 18 18 chr3 5123742 5123797 -222400781 + MLT2A1 LTR ERVL 399 453 0 4812 142 47 58 chr3 5123798 5125279 -222399299 + LTR49-int LTR ERV1 4411 6064 -258 2338 148 133 2 chr3 5125291 5125691 -222398887 + LTR47A LTR ERVL 1 452 0 277 209 132 62 chr3 5127098 5127227 -222397351 + MLT1J2 LTR MaLR 3 140 -310 1714 174 98 113 chr3 5127495 5127709 -222396869 + MLT1D LTR MaLR 1 217 -288 3621 158 6 2 chr3 5127709 5128234 -222396344 + MER1A DNA MER1_type 1 527 0 1714 174 98 113 chr3 5128234 5128532 -222396046 + MLT1D LTR MaLR 217 505 0 302 291 122 17 chr3 5128622 5128794 -222395784 - MIR SINE MIR 0 262 73 4187 118 24 5 chr3 5128865 5129456 -222395122 + LTR43 LTR ERV1 1 602 0 214 308 55 62 chr3 5130079 5130151 -222394427 + MIR SINE MIR 72 143 -119 2289 83 48 0 chr3 5130151 5130440 -222394138 + AluSc SINE Alu 1 303 -6 214 308 55 62 chr3 5130440 5130513 -222394065 + MIR SINE MIR 143 216 -46 238 329 0 37 chr3 5131054 5131136 -222393442 + L2 LINE L2 3192 3270 -2 786 216 32 42 chr3 5131389 5131579 -222392999 + MIR SINE MIR 37 224 -38 237 143 24 24 chr3 5131596 5131638 -222392940 + MLT1D LTR MaLR 1 42 -463 1679 184 62 42 chr3 5131646 5131756 -222392822 + MLT2D LTR ERVL 1 107 -307 2393 60 0 13 chr3 5131756 5132055 -222392523 - AluY SINE Alu -16 295 1 1679 184 62 42 chr3 5132055 5132165 -222392413 + MLT2D LTR ERVL 107 213 -201 2775 195 22 68 chr3 5132165 5132807 -222391771 - LTR9 LTR ERV1 0 612 1 1679 184 62 42 chr3 5132807 5132988 -222391590 + MLT2D LTR ERVL 213 411 -3 1185 254 81 47 chr3 5132990 5133435 -222391143 + MLT1D LTR MaLR 46 505 0 234 222 139 28 chr3 5134117 5134225 -222390353 + MER113 DNA MER1_type? 1 120 -401 2076 128 6 10 chr3 5134826 5135170 -222389408 + AluSx SINE Alu 1 343 0 296 183 42 0 chr3 5136907 5136978 -222387600 - MER116 DNA Mariner -6 74 1 1445 258 11 8 chr3 5137404 5137760 -222386818 - MLT1A2 LTR MaLR -14 360 4 671 306 73 25 chr3 5137947 5138470 -222386108 - L1ME4a LINE L1 -224 5897 5350 352 262 69 48 chr3 5138682 5138827 -222385751 - MLT1K LTR MaLR -167 421 274 321 267 11 7 chr3 5139121 5139242 -222385336 + LTR43 LTR ERV1 223 472 -207 253 229 148 0 chr3 5140089 5140150 -222384428 + L2 LINE L2 3201 3270 -2 249 291 0 25 chr3 5140153 5140232 -222384346 + MIR3 SINE MIR 132 208 0 403 296 23 109 chr3 5140403 5140660 -222383918 + MIR SINE MIR 19 253 -9 30 0 0 0 chr3 5141372 5141402 -222383176 + AT_rich Low_complexity Low_complexity 1 30 0 1334 201 0 76 chr3 5141402 5141496 -222383082 - AluJo SINE Alu -32 280 180 1993 173 12 6 chr3 5141496 5141837 -222382741 - MER61A LTR ERV1 0 343 1 1334 201 0 76 chr3 5141837 5142045 -222382533 - AluJo SINE Alu -132 180 1 458 243 87 28 chr3 5142246 5142406 -222382172 + MIR3 SINE MIR 20 180 -48 304 264 110 110 chr3 5142534 5142761 -222381817 + MIR SINE MIR 4 230 -32 1337 155 4 52 chr3 5142762 5143014 -222381564 - THE1B LTR MaLR 0 364 125 4969 62 1 3 chr3 5143014 5143672 -222380906 - THE1B-int LTR MaLR -923 657 1 1997 115 81 32 chr3 5143672 5144019 -222380559 - THE1B LTR MaLR 0 364 1 188 235 0 0 chr3 5144079 5144113 -222380465 + MIR3 SINE MIR 151 184 -24 1915 143 0 13 chr3 5144113 5144413 -222380165 - AluSx SINE Alu -16 296 1 477 40 40 0 chr3 5144571 5144647 -222379931 + (TCTA)n Simple_repeat Simple_repeat 3 81 0 1743 179 37 10 chr3 5144655 5145057 -222379521 - L1ME1 LINE L1 -7 6159 5747 548 228 8 0 chr3 5145101 5145228 -222379350 - L1ME1 LINE L1 -521 5645 5518 1165 239 84 16 chr3 5145238 5145606 -222378972 - MLT1D LTR MaLR 0 505 113 1182 151 58 92 chr3 5145618 5145952 -222378626 + AluJb SINE Alu 1 324 0 475 169 24 0 chr3 5145995 5146078 -222378500 - MLT1D LTR MaLR -417 88 4 1579 189 70 39 chr3 5146089 5146259 -222378319 - L1ME1 LINE L1 -662 5504 5341 2208 124 7 0 chr3 5146259 5146566 -222378012 - AluSx SINE Alu -3 309 1 1579 189 70 39 chr3 5146566 5146974 -222377604 - L1ME1 LINE L1 -825 5341 4902 1950 161 0 3 chr3 5148200 5148499 -222376079 - AluJo SINE Alu -14 298 1 232 332 158 21 chr3 5149567 5149757 -222374821 + L3 LINE CR1 1009 1224 -353 181 152 61 0 chr3 5149814 5149847 -222374731 + MER5B DNA MER1_type 11 45 -133 722 209 120 0 chr3 5150022 5150180 -222374398 + MER45A DNA AcHobo 2 178 0 2276 94 3 0 chr3 5151759 5152057 -222372521 - AluSx SINE Alu -13 299 1 581 183 0 48 chr3 5152649 5152775 -222371803 - Tigger2 DNA MER2_type 0 2718 2599 569 240 0 0 chr3 5152772 5152893 -222371685 + MER45A DNA AcHobo 57 177 -1 * 1774 117 78 3 chr3 5153101 5153408 -222371170 - Tigger2 DNA MER2_type -116 2602 2273 266 254 30 0 chr3 5153398 5153465 -222371113 - Tigger2 DNA MER2_type -2649 69 1 * 348 325 42 6 chr3 5153724 5153890 -222370688 + MIR3 SINE MIR 30 201 -7 266 254 30 0 chr3 5154397 5154464 -222370114 + Tigger2 DNA MER2_type 1 69 -2649 * 336 139 241 13 chr3 5154454 5154533 -222370045 + Tigger2 DNA MER2_type 2273 2369 -349 336 286 30 75 chr3 5155109 5155242 -222369336 + L2 LINE L2 2943 3069 -203 400 353 0 0 chr3 5155556 5155678 -222368900 + MIR3 SINE MIR 72 193 -15 3960 121 29 7 chr3 5156097 5156717 -222367861 + MER41B LTR ERV1 2 635 0 632 288 101 5 chr3 5156719 5156938 -222367640 - MIR SINE MIR 0 262 23 3452 211 51 36 chr3 5157506 5158595 -222365983 + L1MC4a LINE L1 6700 7805 -3 641 190 29 36 chr3 5158613 5158750 -222365828 - AluJo SINE Alu -176 136 1 1745 166 3 19 chr3 5158865 5159178 -222365400 + AluJb SINE Alu 5 312 0 230 245 0 0 chr3 5159300 5159353 -222365225 - L2 LINE L2 -4 3309 3257 1902 102 35 0 chr3 5160263 5160518 -222364060 + AluSq SINE Alu 49 312 -1 2234 127 0 0 chr3 5160919 5161219 -222363359 - AluSx SINE Alu -12 300 1 192 258 45 15 chr3 5162131 5162197 -222362381 - L2 LINE L2 -1 3312 3245 2473 162 7 20 chr3 5162680 5163119 -222361459 - Tigger2a DNA MER2_type 0 434 2 222 37 0 0 chr3 5163131 5163158 -222361420 + (TA)n Simple_repeat Simple_repeat 2 28 0 324 294 167 11 chr3 5163337 5163517 -222361061 + MLT1J1 LTR MaLR 68 275 -171 252 363 189 19 chr3 5163892 5164258 -222360320 - L2 LINE L2 -344 2970 2543 968 204 75 45 chr3 5164292 5164625 -222359953 + MER2 DNA MER2_type 1 343 -1 665 283 70 86 chr3 5166308 5166898 -222357680 + MLT1K LTR MaLR 9 588 0 3411 191 43 32 chr3 5167317 5167589 -222356989 - L1MB8 LINE L1 -5 6173 5906 1951 177 67 98 chr3 5167589 5168272 -222356306 + MER4A LTR ERV1 3 664 0 3411 191 43 32 chr3 5168272 5168854 -222355724 - L1MB8 LINE L1 -272 5906 5309 736 259 70 5 chr3 5169061 5169246 -222355332 + MIR SINE MIR 29 225 -37 289 349 88 17 chr3 5169418 5169656 -222354922 - L2 LINE L2 -1195 2119 1865 2338 112 7 0 chr3 5171132 5171437 -222353141 + AluSx SINE Alu 1 307 -5 222 278 19 0 chr3 5171573 5171627 -222352951 + L2 LINE L2 3237 3291 -22 354 325 117 13 chr3 5171656 5171887 -222352691 + MIR SINE MIR 8 262 0 1845 109 0 0 chr3 5171919 5172158 -222352420 - AluSc SINE Alu -70 239 1 271 95 0 0 chr3 5172182 5172224 -222352354 - L1MCa LINE L1 -4195 2231 2190 635 171 99 13 chr3 5172235 5172387 -222352191 - L1MB3 LINE L1 -8 6175 6011 429 247 64 16 chr3 5172380 5172566 -222352012 - L1MCb LINE L1 -4219 2263 2068 * 1501 228 30 37 chr3 5172585 5173076 -222351502 - L1MA9 LINE L1 -41 6271 5784 260 136 0 0 chr3 5173130 5173174 -222351404 + L1M4 LINE L1 5731 5774 -400 * 986 172 0 0 chr3 5173173 5173359 -222351219 - L1MA9 LINE L1 -552 5782 5597 * 2807 214 78 19 chr3 5173357 5174465 -222350113 - L1MCb LINE L1 -4434 2003 713 281 87 0 22 chr3 5174467 5174513 -222350065 + (TTTC)n Simple_repeat Simple_repeat 3 47 0 1226 90 6 0 chr3 5174526 5174704 -222349874 + (TTC)n Simple_repeat Simple_repeat 2 180 0 1030 228 47 37 chr3 5174734 5175032 -222349546 - L1MCb LINE L1 -5190 717 417 818 266 31 35 chr3 5175111 5175401 -222349177 - L1MCb LINE L1 -5480 427 139 237 258 45 11 chr3 5175422 5175511 -222349067 - L1MCb LINE L1 -6316 110 19 216 0 0 0 chr3 5175773 5175797 -222348781 + (A)n Simple_repeat Simple_repeat 1 24 0 364 261 17 25 chr3 5175809 5175928 -222348650 - MLT1K LTR MaLR -339 249 132 22 0 0 0 chr3 5176547 5176569 -222348009 + AT_rich Low_complexity Low_complexity 1 22 0 353 253 111 25 chr3 5176691 5177011 -222347567 - MLT1K LTR MaLR -35 553 158 478 269 304 0 chr3 5177130 5177301 -222347277 - MIR SINE MIR -1 261 39 1631 147 27 17 chr3 5178031 5178324 -222346254 + MSTA LTR MaLR 133 428 0 508 258 89 72 chr3 5178346 5178771 -222345807 - MLT1H LTR MaLR -1 592 3 203 328 0 0 chr3 5178894 5178961 -222345617 - MIR SINE MIR 0 262 196 398 35 0 18 chr3 5178987 5179044 -222345534 + (TA)n Simple_repeat Simple_repeat 2 57 0 610 261 133 11 chr3 5179062 5179090 -222345488 - MIR SINE MIR -44 218 195 279 0 0 0 chr3 5179090 5179121 -222345457 + (CA)n Simple_repeat Simple_repeat 2 32 0 610 261 133 11 chr3 5179121 5179280 -222345298 - MIR SINE MIR -67 195 8 1087 175 0 0 chr3 5179396 5179562 -222345016 + FRAM SINE Alu 1 166 -10 1258 245 28 3 chr3 5180089 5180416 -222344162 - MER58B DNA MER1_type -6 335 1 3552 113 72 26 chr3 5181006 5182084 -222342494 + MER11A LTR ERVK 1 1232 -4 11735 207 24 17 chr3 5182237 5186146 -222338432 + L1PA16 LINE L1 2234 6164 -2 260 244 154 0 chr3 5187488 5187611 -222336967 - L3 LINE CR1 -215 1362 1221 664 286 54 17 chr3 5187613 5187854 -222336724 + MIR SINE MIR 13 262 0 314 192 202 61 chr3 5187934 5188033 -222336545 - MER81 DNA DNA -1 113 1 292 289 195 27 chr3 5188583 5188732 -222335846 - L3 LINE CR1 -1127 450 277 313 267 69 15 chr3 5189880 5190011 -222334567 - MIR SINE MIR -90 172 35 523 348 42 42 chr3 5190123 5190309 -222334269 + L2 LINE L2 2465 2653 -661 1058 197 16 0 chr3 5190309 5190492 -222334086 - MER5A DNA MER1_type -3 186 1 523 348 42 42 chr3 5190492 5190618 -222333960 + L2 LINE L2 2652 2777 -537 621 234 105 0 chr3 5190626 5190750 -222333828 - FRAM SINE Alu -39 137 1 590 308 195 11 chr3 5190812 5191176 -222333402 + L2 LINE L2 2881 3311 -2 1713 182 0 20 chr3 5191653 5191955 -222332623 - AluJo SINE Alu -16 296 1 911 327 74 13 chr3 5191979 5192267 -222332311 + MLT1K LTR MaLR 94 422 -166 2302 122 73 14 chr3 5192267 5192621 -222331957 + THE1C LTR MaLR 1 375 0 911 327 74 13 chr3 5192621 5192791 -222331787 + MLT1K LTR MaLR 422 580 -8 195 325 98 16 chr3 5193083 5193206 -222331372 + MIR3 SINE MIR 73 205 -3 281 261 81 0 chr3 5194257 5194368 -222330210 + MER53 DNA DNA 70 189 0 1266 171 33 12 chr3 5194444 5194684 -222329894 - MIR SINE MIR -7 255 11 1148 208 5 18 chr3 5195869 5196090 -222328488 + MER20 DNA MER1_type 2 219 0 2168 180 64 10 chr3 5197218 5197624 -222326954 - MSTB1 LTR MaLR 0 432 5 279 272 110 73 chr3 5197847 5197928 -222326650 - MIR3 SINE MIR -34 174 85 927 239 159 44 chr3 5197928 5198292 -222326286 + MLT1I LTR MaLR 3 408 -1 279 272 110 73 chr3 5198292 5198346 -222326232 - MIR3 SINE MIR -123 85 34 3565 159 67 20 chr3 5198524 5199165 -222325413 - LTR51 LTR ERV1 0 671 1 321 211 0 0 chr3 5199940 5199997 -222324581 + L2 LINE L2 3216 3272 0 26 30 0 0 chr3 5200306 5200339 -222324239 + AT_rich Low_complexity Low_complexity 1 33 0 981 185 29 62 chr3 5200528 5200771 -222323807 + MER106A DNA MER1_type 1 235 -1 1740 169 3 14 chr3 5201314 5201635 -222322943 + AluJb SINE Alu 2 312 0 915 196 12 12 chr3 5202109 5202277 -222322301 - AluJo SINE Alu -24 288 121 319 313 92 35 chr3 5202306 5202708 -222321870 - L1M4 LINE L1 -2412 3734 3310 723 203 114 47 chr3 5202731 5202967 -222321611 - L1MB8 LINE L1 -2 6176 5925 850 131 0 22 chr3 5203773 5203910 -222320668 - L1MB8 LINE L1 -598 5693 5560 316 250 75 0 chr3 5203911 5203991 -222320587 - MIR SINE MIR -91 171 86 196 192 19 58 chr3 5204106 5204158 -222320420 - MIR3 SINE MIR -14 194 145 45 19 0 0 chr3 5204227 5204279 -222320299 + AT_rich Low_complexity Low_complexity 1 52 0 364 306 104 8 chr3 5204544 5204678 -222319900 - MLT1I LTR MaLR -244 165 19 568 179 32 0 chr3 5204771 5204894 -222319684 - MER53 DNA DNA 0 189 63 512 206 167 39 chr3 5204947 5205127 -222319451 + MER113 DNA MER1_type? 274 476 -45 246 239 28 42 chr3 5205199 5205270 -222319308 - MIR SINE MIR -62 146 77 1574 186 67 25 chr3 5206473 5206800 -222317778 - MER58B DNA MER1_type 0 341 1 2229 126 82 15 chr3 5207036 5207377 -222317201 - THE1B LTR MaLR 0 364 1 11951 86 6 3 chr3 5207382 5208947 -222315631 - THE1B-int LTR MaLR -9 1571 1 2261 131 76 15 chr3 5208947 5209290 -222315288 - THE1B LTR MaLR 0 364 1 25 0 0 0 chr3 5209442 5209467 -222315111 + AT_rich Low_complexity Low_complexity 1 25 0 424 309 210 22 chr3 5209605 5209929 -222314649 + L2 LINE L2 2887 3271 -1 391 279 202 6 chr3 5209931 5210114 -222314464 + MIR SINE MIR 20 238 -24 221 277 0 0 chr3 5210084 5210131 -222314447 + L2 LINE L2 3254 3300 -13 * 246 174 43 33 chr3 5210131 5210223 -222314355 + (TCTA)n Simple_repeat Simple_repeat 3 95 0 208 200 22 0 chr3 5211398 5211443 -222313135 + (TAAA)n Simple_repeat Simple_repeat 1 46 0 1961 206 80 49 chr3 5211926 5212415 -222312163 + MLT1D LTR MaLR 2 505 0 270 246 282 0 chr3 5212499 5212609 -222311969 + MER5A DNA MER1_type 49 189 0 1893 212 51 22 chr3 5213801 5214249 -222310329 + MLT1C LTR MaLR 6 466 -1 1886 151 18 0 chr3 5214254 5214533 -222310045 + AluSx SINE Alu 19 302 -10 324 322 0 0 chr3 5214556 5214671 -222309907 - MIR SINE MIR -6 256 142 2276 111 3 0 chr3 5214681 5214979 -222309599 - AluSx SINE Alu -13 299 1 367 338 8 8 chr3 5215497 5215630 -222308948 - MIR3 SINE MIR -65 143 11 270 254 0 0 chr3 5215666 5215776 -222308802 + (TCCA)n Simple_repeat Simple_repeat 3 112 0 22 56 0 0 chr3 5216145 5216181 -222308397 + AT_rich Low_complexity Low_complexity 1 36 0 273 360 26 0 chr3 5216567 5216681 -222307897 - MIR SINE MIR -44 218 102 344 266 53 44 chr3 5216954 5217067 -222307511 - MIR3 SINE MIR -25 183 70 381 293 94 17 chr3 5217147 5217242 -222307336 + MIR SINE MIR 30 116 -146 1653 167 0 61 chr3 5217242 5217401 -222307177 - AluJb SINE Alu -20 292 160 2183 99 0 0 chr3 5217401 5217673 -222306905 - AluSx SINE Alu -17 295 24 1653 167 0 61 chr3 5217673 5217824 -222306754 - AluJb SINE Alu -152 160 1 381 293 94 17 chr3 5217824 5217909 -222306669 + MIR SINE MIR 116 224 -38 1078 250 23 101 chr3 5218053 5218821 -222305757 - L2 LINE L2 0 3313 2624 884 286 118 32 chr3 5218836 5219210 -222305368 + MLT1J2 LTR MaLR 15 420 -30 841 294 38 55 chr3 5219270 5219617 -222304961 - L2 LINE L2 -685 2629 2289 806 197 84 64 chr3 5219632 5219835 -222304743 - MER63A DNA MER1_type -2 208 2 204 322 0 46 chr3 5220272 5220359 -222304219 + MIR SINE MIR 130 212 -50 21 0 0 0 chr3 5220928 5220949 -222303629 + AT_rich Low_complexity Low_complexity 1 21 0 288 307 88 0 chr3 5221571 5221708 -222302870 + L3 LINE CR1 716 864 -713 2781 66 43 3 chr3 5221926 5222276 -222302302 - THE1B LTR MaLR 0 364 1 201 381 44 17 chr3 5222869 5223050 -222301528 + L3 LINE CR1 1154 1339 -238 681 293 18 26 chr3 5223092 5223321 -222301257 - MIR SINE MIR -29 233 7 229 274 60 24 chr3 5223345 5223429 -222301149 + L3 LINE CR1 1358 1444 -133 190 274 55 14 chr3 5223843 5223916 -222300662 + L3 LINE CR1 1467 1542 -35 1827 173 141 3 chr3 5225045 5225421 -222299157 + MSTA LTR MaLR 1 428 0 254 281 26 61 chr3 5225564 5225678 -222298900 - MIR SINE MIR -122 140 31 247 299 149 65 chr3 5225734 5225935 -222298643 - MIR SINE MIR -17 245 28 348 279 35 87 chr3 5226237 5226282 -222298296 + MER5B DNA MER1_type 4 50 -128 1866 208 19 6 chr3 5226282 5226642 -222297936 + MLT1A1 LTR MaLR 1 365 0 348 279 35 87 chr3 5226642 5226768 -222297810 + MER5B DNA MER1_type 50 166 -12 851 206 22 27 chr3 5226939 5227123 -222297455 - MER5A DNA MER1_type -5 184 2 2110 249 48 60 chr3 5227919 5228210 -222296368 - L1ME3A LINE L1 -110 6060 5767 2001 121 0 7 chr3 5228210 5228490 -222296088 + AluSq SINE Alu 1 278 -35 216 0 0 0 chr3 5228492 5228516 -222296062 + (TAAA)n Simple_repeat Simple_repeat 2 25 0 189 94 0 0 chr3 5228522 5228554 -222296024 + (TAAG)n Simple_repeat Simple_repeat 2 33 0 2110 249 48 60 chr3 5228554 5228805 -222295773 - L1ME3A LINE L1 -409 5761 5508 2014 141 37 3 chr3 5228805 5229132 -222295446 - MER44D DNA MER2_type -1 608 1 2110 249 48 60 chr3 5229132 5229482 -222295096 - L1ME3A LINE L1 -662 5508 5175 2264 121 0 7 chr3 5229601 5229907 -222294671 - AluSx SINE Alu -7 305 2 1940 168 12 0 chr3 5232470 5232798 -222291780 + L1MB2 LINE L1 5709 6040 -131 833 174 7 0 chr3 5232841 5232990 -222291588 + L1MB3 LINE L1 6034 6183 0 337 105 18 0 chr3 5233061 5233118 -222291460 + L1MB2 LINE L1 6114 6171 0 1348 314 59 58 chr3 5233225 5234332 -222290246 + L2 LINE L2 2201 3312 -1 198 288 61 15 chr3 5234524 5234590 -222289988 - MIR3 SINE MIR -25 183 115 772 157 9 0 chr3 5234692 5234807 -222289771 - FLAM_C SINE Alu -15 118 3 252 59 0 0 chr3 5236723 5236757 -222287821 + (CA)n Simple_repeat Simple_repeat 2 35 0 2034 185 33 31 chr3 5236811 5237367 -222287211 + MLT2A2 LTR ERVL 1 554 0 1677 186 0 7 chr3 5237857 5238149 -222286429 - AluJo SINE Alu -22 290 3 323 255 20 40 chr3 5238690 5238839 -222285739 - Charlie8 DNA MER1_type -2194 223 78 1160 189 43 13 chr3 5239041 5239274 -222285304 - L1ME1 LINE L1 -4 6162 5923 * 1928 200 113 20 chr3 5239268 5239355 -222285223 - L1MD3 LINE L1 -743 5403 5326 1577 172 46 40 chr3 5239355 5239728 -222284850 + THE1C LTR MaLR 1 375 0 1928 200 113 20 chr3 5239728 5240295 -222284283 - L1MD3 LINE L1 -820 5326 5105 297 0 0 0 chr3 5240295 5240328 -222284250 + (CA)n Simple_repeat Simple_repeat 2 34 0 1928 200 113 20 chr3 5240328 5240492 -222284086 - L1MD3 LINE L1 -1041 5105 4958 246 286 60 8 chr3 5241448 5241506 -222283072 - L2 LINE L2 -1436 1878 1825 2586 52 0 0 chr3 5241506 5241812 -222282766 + AluY SINE Alu 1 306 -5 246 286 60 8 chr3 5241812 5241886 -222282692 - L2 LINE L2 -1489 1825 1739 866 293 57 6 chr3 5242009 5242340 -222282238 + L2 LINE L2 1868 2215 -1099 706 152 0 118 chr3 5242341 5242519 -222282059 + MLT1E2 LTR MaLR 1 157 -469 * 1732 189 13 0 chr3 5242514 5242820 -222281758 + MLT1A1 LTR MaLR 56 365 0 6078 198 88 83 chr3 5242820 5243240 -222281338 + MLT1A1-int LTR MaLR 1 417 -1318 1419 206 16 23 chr3 5243240 5243546 -222281032 - AluJo SINE Alu -8 304 1 6078 198 88 83 chr3 5243546 5244851 -222279727 + MLT1A1-int LTR MaLR 417 1735 0 2060 178 8 11 chr3 5244851 5245217 -222279361 + MLT1A1 LTR MaLR 1 365 0 420 275 35 69 chr3 5245729 5245907 -222278671 + MIR SINE MIR 20 189 -50 465 19 0 0 chr3 5246428 5246482 -222278096 + (CA)n Simple_repeat Simple_repeat 1 54 0 1615 246 73 39 chr3 5247396 5247933 -222276645 + MLT1K LTR MaLR 28 582 -6 180 290 16 16 chr3 5247992 5248054 -222276524 + MIR SINE MIR 83 144 -64 27 0 0 0 chr3 5248436 5248463 -222276115 + AT_rich Low_complexity Low_complexity 1 27 0 211 254 45 0 chr3 5248650 5248717 -222275861 + MIR SINE MIR 182 251 -11 369 250 73 62 chr3 5249584 5249776 -222274802 + MIR SINE MIR 14 207 -55 419 287 61 24 chr3 5250378 5250542 -222274036 + MIR SINE MIR 84 253 -9 489 244 8 39 chr3 5251743 5251870 -222272708 - MLT1F LTR MaLR -332 210 88 297 135 0 0 chr3 5252396 5252448 -222272130 + (GA)n Simple_repeat Simple_repeat 1 52 0 255 350 36 7 chr3 5252501 5252639 -222271939 - MIR SINE MIR -65 143 21 711 289 24 45 chr3 5254552 5254798 -222269780 + MIR SINE MIR 15 255 -7 205 297 16 31 chr3 5254830 5254894 -222269684 - MIR SINE MIR -113 95 33 48 53 0 0 chr3 5255789 5255865 -222268713 + AT_rich Low_complexity Low_complexity 1 76 0 1447 238 3 3 chr3 5256723 5257005 -222267573 + AluJo SINE Alu 4 285 -27 345 47 0 0 chr3 5257035 5257078 -222267500 + (TG)n Simple_repeat Simple_repeat 2 44 0 302 294 18 9 chr3 5257167 5257276 -222267302 - MIR3 SINE MIR -2 206 97 195 129 0 0 chr3 5257338 5257369 -222267209 + (CA)n Simple_repeat Simple_repeat 2 32 0 334 264 35 0 chr3 5257388 5257475 -222267103 + MIR SINE MIR 166 255 -7 212 261 29 14 chr3 5258003 5258072 -222266506 + L3 LINE CR1 1503 1572 -5 264 243 57 86 chr3 5258240 5258380 -222266198 - MIR SINE MIR -3 259 124 261 274 43 26 chr3 5258435 5258552 -222266026 - MIR SINE MIR -59 203 85 191 326 167 0 chr3 5258736 5258957 -222265621 + L2 LINE L2 1441 1698 -1616 382 238 188 13 chr3 5258964 5259214 -222265364 - L1MC4a LINE L1 -224 5897 5602 309 274 11 11 chr3 5259437 5259532 -222265046 + L2 LINE L2 2994 3088 -225 21 36 0 0 chr3 5259539 5259567 -222265011 + AT_rich Low_complexity Low_complexity 1 28 0 2671 87 5 0 chr3 5259567 5259935 -222264643 - L1PB1 LINE L1 0 6151 5782 585 152 53 0 chr3 5259939 5260110 -222264468 + (TA)n Simple_repeat Simple_repeat 1 180 0 354 173 74 0 chr3 5260124 5260286 -222264292 + (TA)n Simple_repeat Simple_repeat 1 174 0 574 52 104 12 chr3 5260311 5260624 -222263954 + (TA)n Simple_repeat Simple_repeat 1 341 0 347 228 232 0 chr3 5260649 5260756 -222263822 + MER5A DNA MER1_type 60 178 0 502 54 27 0 chr3 5261170 5261244 -222263334 + (TCTA)n Simple_repeat Simple_repeat 3 78 0 351 335 107 52 chr3 5262723 5263189 -222261389 + MLT1K LTR MaLR 2 493 -95 527 287 129 30 chr3 5263944 5264855 -222259723 + L1ME3A LINE L1 593 1639 -4671 1297 236 70 90 chr3 5265085 5265870 -222258708 + L1ME3A LINE L1 4439 5207 -922 268 204 62 97 chr3 5265876 5265989 -222258589 + L1ME3A LINE L1 5837 5945 -208 335 270 130 55 chr3 5266029 5266229 -222258349 + L1ME3A LINE L1 5939 6153 0 417 268 149 30 chr3 5266284 5266452 -222258126 + MIR SINE MIR 25 212 -50 294 297 39 42 chr3 5266735 5266905 -222257673 - MIR SINE MIR -69 139 21 540 226 0 0 chr3 5267833 5267939 -222256639 - L2 LINE L2 -19 3294 3189 251 281 0 0 chr3 5267949 5268013 -222256565 + MIR SINE MIR 84 147 -115 2334 98 41 120 chr3 5268454 5268914 -222255664 - MSTC LTR MaLR 0 428 5 1769 109 12 12 chr3 5270603 5270859 -222253719 + AluSg SINE Alu 37 292 -18 1111 282 92 5 chr3 5271268 5271669 -222252909 + L1ME3A LINE L1 5735 6170 0 348 157 22 101 chr3 5271773 5271862 -222252716 + L1ME3A LINE L1 6077 6158 -12 2482 46 3 0 chr3 5274029 5274333 -222250245 + AluY SINE Alu 1 305 -6 231 188 0 0 chr3 5274346 5274394 -222250184 + (TG)n Simple_repeat Simple_repeat 1 48 0 184 246 33 16 chr3 5274446 5274507 -222250071 + L2 LINE L2 2219 2280 -1034 414 343 164 21 chr3 5274533 5274906 -222249672 + L2 LINE L2 2845 3270 -2 24 0 0 0 chr3 5276866 5276890 -222247688 + AT_rich Low_complexity Low_complexity 1 24 0 480 310 28 5 chr3 5277495 5277711 -222246867 + L1M4 LINE L1 3730 3950 -2196 2687 108 10 0 chr3 5278249 5278649 -222245929 - L1PA14 LINE L1 -1 6160 5757 2199 106 3 0 chr3 5279180 5279473 -222245105 + AluSg SINE Alu 1 294 -16 3424 283 97 45 chr3 5279885 5281828 -222242750 + L2 LINE L2 1276 3313 0 637 324 51 19 chr3 5281990 5282305 -222242273 + L1M3c LINE L1 649 973 -5806 231 270 90 10 chr3 5282574 5282674 -222241904 + L1M3c LINE L1 1364 1471 -5378 1769 225 52 85 chr3 5283193 5284061 -222240517 + L1M3c LINE L1 1596 2438 -4411 15449 200 14 16 chr3 5284105 5287461 -222237117 - L1PA15 LINE L1 -1 6815 3453 198 0 0 0 chr3 5287461 5287483 -222237095 + (TTTA)n Simple_repeat Simple_repeat 2 23 0 1612 128 4 4 chr3 5287484 5287718 -222236860 - AluSc SINE Alu -32 277 44 15449 200 14 16 chr3 5287718 5288870 -222235708 - L1PA15 LINE L1 -3362 3454 2315 257 231 0 0 chr3 5288907 5288959 -222235619 + L1PA15-16 LINE L1 2365 2416 -4433 369 237 11 0 chr3 5288974 5289067 -222235511 - L1PA15 LINE L1 -5129 1658 1565 * 5831 259 94 34 chr3 5289065 5291244 -222233334 - L1PA13 LINE L1 -4481 2316 2 2140 256 51 24 chr3 5291259 5292630 -222231948 + L1M1 LINE L1 2831 4243 -3322 1050 172 0 22 chr3 5292641 5292868 -222231710 + L1 LINE L1 5111 5332 -814 432 198 69 0 chr3 5292867 5292968 -222231610 + L1MA9 LINE L1 6167 6274 -38 * 300 318 74 7 chr3 5292971 5293119 -222231459 + L1M LINE L1 5272 5429 -2613 460 352 73 40 chr3 5293737 5294064 -222230514 + L1MEd LINE L1 458 795 -5324 7946 88 44 7 chr3 5294170 5296534 -222228044 + L1PB1 LINE L1 1 2614 -4249 2082 165 18 12 chr3 5296544 5297038 -222227540 + L1PB1 LINE L1 2803 3309 -3553 27679 109 48 44 chr3 5297049 5303167 -222221411 + L1PA7 LINE L1 12 6154 0 4127 226 18 5 chr3 5303169 5303739 -222220839 + L1PB1 LINE L1 3299 3893 -2969 216 0 0 0 chr3 5303739 5303763 -222220815 + (CAAA)n Simple_repeat Simple_repeat 1 24 0 4127 226 18 5 chr3 5303763 5304281 -222220297 + L1PB1 LINE L1 3893 4402 -2460 6113 159 12 8 chr3 5304288 5306431 -222218147 + L1PB1 LINE L1 4719 6865 -2 300 291 181 0 chr3 5306524 5306651 -222217927 + L1ME LINE L1 5562 5711 -410 3184 121 20 69 chr3 5306709 5307263 -222217315 + MER1A DNA MER1_type 1 527 0 319 340 20 0 chr3 5307686 5307786 -222216792 - L2 LINE L2 -41 3272 3171 1620 177 17 9 chr3 5308097 5308447 -222216131 - L1MA5 LINE L1 -5 6295 5943 2892 166 5 6 chr3 5308447 5309097 -222215481 + L1MA5 LINE L1 5186 5834 -466 348 277 121 40 chr3 5309354 5309502 -222215076 - MIR3 SINE MIR -43 165 7 207 245 20 20 chr3 5311413 5311462 -222213116 - MER5A DNA MER1_type -31 158 110 1063 284 48 48 chr3 5311467 5311992 -222212586 - MLT1H1 LTR MaLR -6 549 25 429 289 55 77 chr3 5312011 5312322 -222212256 - MLT1H1-int LTR MaLR 0 1371 1068 1245 286 91 45 chr3 5313036 5313113 -222211465 + L1M4 LINE L1 992 1064 -5318 2155 109 10 0 chr3 5313113 5313406 -222211172 + AluSx SINE Alu 1 296 -16 1245 286 91 45 chr3 5313406 5315042 -222209536 + L1M4 LINE L1 1064 2623 -3759 1963 142 28 0 chr3 5315042 5315324 -222209254 - AluSx SINE Alu -22 290 1 1245 286 91 45 chr3 5315324 5315335 -222209243 + L1M4 LINE L1 2623 2632 -3750 186 43 0 0 chr3 5315335 5315358 -222209220 + (CAAAA)n Simple_repeat Simple_repeat 2 24 0 1245 286 91 45 chr3 5315358 5315648 -222208930 + L1M4 LINE L1 2632 3202 -3180 229 283 62 7 chr3 5315729 5315874 -222208704 + L1M4 LINE L1 5482 5634 -748 4874 121 7 5 chr3 5315883 5316627 -222207951 - L1PA13 LINE L1 -11 6152 5408 2288 250 56 34 chr3 5316627 5317470 -222207108 + L1ME3A LINE L1 5305 6165 -5 348 196 155 0 chr3 5317493 5317590 -222206988 - Tigger6 DNA MER2_type 0 1597 1486 2348 100 0 13 chr3 5317590 5317606 -222206972 - AluSx SINE Alu -5 307 292 189 0 0 0 chr3 5317606 5317627 -222206951 + (TTAA)n Simple_repeat Simple_repeat 1 21 0 2348 100 0 13 chr3 5317627 5317921 -222206657 - AluSx SINE Alu -20 292 1 528 231 67 0 chr3 5317948 5318082 -222206496 - Tigger6 DNA MER2_type -1453 144 2 335 264 14 0 chr3 5318175 5318247 -222206331 + L2 LINE L2 3198 3270 -2 229 293 98 12 chr3 5318427 5318509 -222206069 - L2 LINE L2 -41 3231 3143 1820 158 0 39 chr3 5318614 5318924 -222205654 + AluJb SINE Alu 1 298 -14 185 270 45 11 chr3 5319320 5319409 -222205169 + L2 LINE L2 3118 3209 -104 470 300 123 43 chr3 5319937 5320481 -222204097 + L2 LINE L2 2448 3029 -243 200 313 45 15 chr3 5320485 5320552 -222204026 - MIR SINE MIR -186 76 8 305 316 0 35 chr3 5320756 5320870 -222203708 + MIR3 SINE MIR 2 111 -97 338 293 22 50 chr3 5320893 5321074 -222203504 + L2 LINE L2 2857 3032 -240 674 263 6 0 chr3 5321086 5321265 -222203313 - LTR16B LTR ERVL 0 464 285 463 250 38 12 chr3 5321318 5321478 -222203100 - LTR16B LTR ERVL -285 179 16 230 325 12 0 chr3 5321488 5321571 -222203007 + MIR3 SINE MIR 118 201 -7 180 333 21 0 chr3 5322108 5322156 -222202422 - L2 LINE L2 -85 3187 3139 423 304 33 72 chr3 5322259 5322535 -222202043 - MER102b DNA MER1_type -34 307 43 288 304 6 17 chr3 5323208 5323345 -222201233 + GA-rich Low_complexity Low_complexity 1 135 0 447 336 61 42 chr3 5326113 5326538 -222198040 + MLT1K LTR MaLR 154 586 -2 539 208 60 140 chr3 5326837 5327102 -222197476 - L2 LINE L2 -15 3298 3055 1089 170 21 30 chr3 5327177 5327412 -222197166 + L1MB7 LINE L1 5587 5819 -365 1593 223 119 10 chr3 5327420 5327900 -222196678 + MER34 LTR ERV1 11 542 0 1498 163 14 3 chr3 5327900 5328182 -222196396 + L1MB7 LINE L1 5809 6093 -91 300 117 50 0 chr3 5328321 5328381 -222196197 + L1MB8 LINE L1 6115 6177 -1 1366 233 41 41 chr3 5328656 5329046 -222195532 - MLT1B LTR MaLR 0 390 1 252 385 24 12 chr3 5329757 5329923 -222194655 + MIR SINE MIR 11 178 -84 250 264 11 66 chr3 5329980 5330071 -222194507 + L2 LINE L2 3227 3312 -1 4311 180 42 13 chr3 5330171 5330915 -222193663 + L1MB3 LINE L1 5188 5974 -209 1737 157 52 0 chr3 5330915 5331201 -222193377 + AluJb SINE Alu 2 302 -10 4311 180 42 13 chr3 5331201 5331410 -222193168 + L1MB3 LINE L1 5974 6175 -8 213 271 17 0 chr3 5331671 5331730 -222192848 + (CA)n Simple_repeat Simple_repeat 2 61 0 1907 151 20 7 chr3 5331796 5332095 -222192483 - AluJb SINE Alu -8 304 2 25 0 0 0 chr3 5332104 5332129 -222192449 + AT_rich Low_complexity Low_complexity 1 25 0 556 187 174 0 chr3 5332942 5333097 -222191481 + L1MB7 LINE L1 5649 5830 -354 597 203 39 0 chr3 5333098 5333251 -222191327 + L1MB7 LINE L1 6010 6168 -16 220 345 60 0 chr3 5333288 5333404 -222191174 - L2 LINE L2 -398 2916 2794 269 330 43 0 chr3 5334211 5334326 -222190252 - L2 LINE L2 0 3313 3194 741 250 74 57 chr3 5334897 5335249 -222189329 - L1MD2 LINE L1 -65 6294 5937 2076 138 0 0 chr3 5336931 5337229 -222187349 + AluSx SINE Alu 1 298 -14 184 410 43 0 chr3 5337698 5337815 -222186763 - MIR3 SINE MIR -3 205 84 222 311 57 77 chr3 5338000 5338248 -222186330 + L2 LINE L2 2836 3078 -194 287 290 80 12 chr3 5338704 5338866 -222185712 - L1MD2 LINE L1 -343 5778 5606 249 341 0 12 chr3 5338999 5339084 -222185494 + L2 LINE L2 2965 3048 -224 969 266 60 43 chr3 5339361 5339729 -222184849 + MLT1K LTR MaLR 209 582 -6 1934 158 0 3 chr3 5340735 5341032 -222183546 - AluJb SINE Alu -16 296 1 392 302 68 63 chr3 5341108 5341505 -222183073 - L1MC4a LINE L1 -1903 5905 5507 312 330 102 19 chr3 5341768 5341983 -222182595 - L1MC4a LINE L1 -762 5384 5152 304 157 43 43 chr3 5342739 5342809 -222181769 + L1ME4a LINE L1 5978 6047 -74 22 0 0 0 chr3 5343438 5343460 -222181118 + AT_rich Low_complexity Low_complexity 1 22 0 344 200 27 91 chr3 5343752 5343844 -222180734 - MLT1K LTR MaLR -284 304 219 2549 104 64 7 chr3 5343844 5344249 -222180329 - MSTA LTR MaLR 0 428 1 344 200 27 91 chr3 5344249 5344266 -222180312 - MLT1K LTR MaLR -369 219 202 1941 239 21 23 chr3 5345577 5346095 -222178483 + L1MEc LINE L1 27 543 -5853 2169 108 0 3 chr3 5346806 5347101 -222177477 - AluSc SINE Alu 0 309 16 397 266 45 52 chr3 5347127 5347281 -222177297 + MLT1J2 LTR MaLR 275 427 -23 363 23 0 0 chr3 5347342 5347386 -222177192 + (TG)n Simple_repeat Simple_repeat 2 45 0 2587 39 0 0 chr3 5347865 5348170 -222176408 + AluYa5 SINE Alu 1 305 -6 438 317 12 30 chr3 5348627 5348794 -222175784 - L2 LINE L2 -3 3310 3147 283 304 7 15 chr3 5348820 5348955 -222175623 + (TA)n Simple_repeat Simple_repeat 1 134 0 234 150 0 0 chr3 5348963 5349003 -222175575 + (TG)n Simple_repeat Simple_repeat 2 41 0 518 251 163 38 chr3 5349007 5349246 -222175332 - L2 LINE L2 -182 3131 2863 409 301 30 54 chr3 5349618 5349821 -222174757 - MIR3 SINE MIR -3 205 8 1659 144 97 0 chr3 5350194 5350472 -222174106 + AluSx SINE Alu 1 305 -7 2247 174 42 3 chr3 5351301 5351685 -222172893 - MER47B DNA MER2_type 0 418 20 260 299 16 55 chr3 5353710 5353837 -222170741 - MLT1K LTR MaLR -248 340 219 433 316 29 37 chr3 5354029 5354222 -222170356 + MIR SINE MIR 3 191 -63 213 98 12 98 chr3 5354652 5354734 -222169844 + (GGGAGA)n Simple_repeat Simple_repeat 2 76 0 1449 108 5 0 chr3 5355185 5355397 -222169181 + L1PB1 LINE L1 5929 6141 -10 322 330 18 28 chr3 5355811 5356029 -222168549 + L1ME LINE L1 5360 5575 -546 2309 100 3 0 chr3 5356602 5356901 -222167677 - AluSg SINE Alu -10 300 1 37 69 0 0 chr3 5357624 5357696 -222166882 + AT_rich Low_complexity Low_complexity 1 72 0 208 267 0 80 chr3 5357702 5357777 -222166801 - MIR SINE MIR -116 146 78 2820 313 96 32 chr3 5359133 5360915 -222163663 + L2 LINE L2 1414 3313 0 212 271 14 29 chr3 5361183 5361253 -222163325 + L2 LINE L2 2923 2991 -322 722 245 76 43 chr3 5361385 5361718 -222162860 + L1ME LINE L1 5266 5610 -554 284 126 13 82 chr3 5361751 5361910 -222162668 + (TA)n Simple_repeat Simple_repeat 2 149 0 529 224 177 47 chr3 5361981 5362235 -222162343 + MLT1E LTR MaLR 304 590 -3 566 221 21 0 chr3 5362287 5362427 -222162151 - Charlie4 DNA MER1_type -9 1952 1810 330 228 13 0 chr3 5362616 5362695 -222161883 - L1M4 LINE L1 -1536 4610 4531 420 259 122 14 chr3 5362789 5362936 -222161642 - MIR SINE MIR -12 250 88 594 177 9 18 chr3 5363153 5363266 -222161312 + LTR52 LTR ERVL 6 117 -304 1341 211 53 12 chr3 5363296 5363619 -222160959 + LTR52 LTR ERVL 86 421 0 353 261 164 42 chr3 5364358 5364630 -222159948 - L1M4 LINE L1 -1630 4516 4278 189 0 0 0 chr3 5364630 5364651 -222159927 + (TAA)n Simple_repeat Simple_repeat 1 21 0 353 261 164 42 chr3 5364651 5364904 -222159674 - L1M4 LINE L1 -1868 4278 3927 428 343 71 23 chr3 5366125 5366559 -222158019 + L1M4 LINE L1 4779 5233 -913 581 274 62 6 chr3 5366608 5366787 -222157791 - MIR SINE MIR -9 253 65 471 263 70 22 chr3 5366791 5367054 -222157524 + L1M2 LINE L1 5266 5535 -658 26 50 0 0 chr3 5367522 5367562 -222157016 + AT_rich Low_complexity Low_complexity 1 40 0 15469 34 0 0 chr3 5369786 5372421 -222152157 + L1PA3 LINE L1 3519 6155 0 1654 138 0 0 chr3 5373936 5374167 -222150411 - AluJb SINE Alu -9 303 73 230 154 0 0 chr3 5374963 5375002 -222149576 - L2 LINE L2 -10 3262 3224 * 482 316 158 0 chr3 5374969 5375178 -222149400 - MIR SINE MIR -10 252 11 274 309 125 13 chr3 5376397 5376549 -222148029 - MLT1K LTR MaLR -8 580 412 390 253 20 33 chr3 5376602 5376752 -222147826 - L1ME1 LINE L1 -23 6143 5996 1375 246 73 45 chr3 5378229 5378802 -222145776 + L1MB4 LINE L1 4744 5332 -814 10287 199 47 15 chr3 5378802 5381930 -222142648 + L1MA4A LINE L1 2 3437 -3411 5814 142 45 27 chr3 5381955 5384107 -222140471 + L1MA4A LINE L1 4804 7000 -5 3911 185 30 19 chr3 5384097 5384386 -222140192 + L1MB4 LINE L1 5312 5596 -584 * 1691 182 16 0 chr3 5384386 5384693 -222139885 + AluJb SINE Alu 1 312 0 3911 185 30 19 chr3 5384693 5385226 -222139352 + L1MB4 LINE L1 5596 6143 -37 3382 176 16 3 chr3 5385249 5385886 -222138692 + L1MB1 LINE L1 5523 6167 -1 245 286 0 0 chr3 5386238 5386294 -222138284 - MIR SINE MIR -65 143 88 1966 112 13 49 chr3 5386626 5386930 -222137648 + AluSx SINE Alu 4 296 -16 290 235 0 108 chr3 5387044 5387100 -222137478 + MIR SINE MIR 102 144 -118 1620 185 56 3 chr3 5387100 5387424 -222137154 + MER2 DNA MER2_type 2 342 -2 290 235 0 108 chr3 5387424 5387469 -222137109 + MIR SINE MIR 144 192 -70 370 239 92 0 chr3 5388475 5388605 -222135973 - MLT1K LTR MaLR -66 522 381 523 208 104 27 chr3 5390114 5390297 -222134281 - MIR SINE MIR -1 261 65 331 252 22 50 chr3 5390342 5390481 -222134097 + L1ME4a LINE L1 5987 6121 0 429 319 63 95 chr3 5390562 5391101 -222133477 + L2 LINE L2 2294 2806 -508 2307 125 11 6 chr3 5391101 5391454 -222133124 + THE1A LTR MaLR 1 355 0 429 319 63 95 chr3 5391454 5391617 -222132961 + L2 LINE L2 2806 2973 -341 201 363 20 29 chr3 5391669 5391771 -222132807 - L2 LINE L2 0 3272 3172 367 229 28 18 chr3 5391773 5391882 -222132696 - MER81 DNA DNA -1 113 4 25 31 0 0 chr3 5392012 5392044 -222132534 + AT_rich Low_complexity Low_complexity 1 32 0 508 255 21 28 chr3 5392351 5392496 -222132082 + MIR SINE MIR 118 261 -1 205 308 15 0 chr3 5394531 5394596 -222129982 + L2 LINE L2 3248 3313 0 2177 95 64 14 chr3 5396643 5397000 -222127578 + THE1C LTR MaLR 1 375 0 23 0 0 0 chr3 5397228 5397251 -222127327 + AT_rich Low_complexity Low_complexity 1 23 0 282 56 0 0 chr3 5397815 5397851 -222126727 + (GA)n Simple_repeat Simple_repeat 1 36 0 283 367 69 9 chr3 5398424 5398642 -222125936 + MIR SINE MIR 31 261 -1 240 389 20 20 chr3 5398694 5398843 -222125735 + L3 LINE CR1 1337 1485 -92 426 247 111 82 chr3 5400552 5400795 -222123783 - MIR SINE MIR -9 253 4 191 306 134 15 chr3 5401003 5401137 -222123441 - L3 LINE CR1 -27 1550 1401 406 368 41 59 chr3 5401513 5402005 -222122573 - L3 LINE CR1 -329 1248 766 2576 157 38 14 chr3 5402082 5402579 -222121999 + L1PA16 LINE L1 5654 6162 -4 517 322 102 82 chr3 5402957 5404080 -222120498 - L2 LINE L2 0 3272 2113 183 80 0 0 chr3 5404285 5404310 -222120268 + (TA)n Simple_repeat Simple_repeat 1 25 0 2474 83 0 0 chr3 5404368 5404670 -222119908 - AluSq SINE Alu -11 302 1 268 290 121 16 chr3 5404782 5404906 -222119672 - Charlie8 DNA MER1_type -2161 256 120 1029 122 6 0 chr3 5404947 5405103 -222119475 + L1PA10 LINE L1 6006 6162 -6 435 294 183 11 chr3 5406270 5406450 -222118128 - MIR SINE MIR -26 236 26 291 288 0 12 chr3 5406449 5406529 -222118049 + L2 LINE L2 3231 3309 -4 * 2095 202 52 2 chr3 5407026 5407432 -222117146 + MSTB LTR MaLR 1 426 0 297 173 39 0 chr3 5407643 5407695 -222116883 + L2 LINE L2 3219 3272 0 2236 88 10 3 chr3 5409602 5409896 -222114682 + AluSc SINE Alu 1 296 -13 470 344 14 19 chr3 5409955 5410170 -222114408 - MIR SINE MIR -3 259 46 322 338 25 25 chr3 5410931 5411088 -222113490 - MIR SINE MIR -94 168 12 3883 137 82 0 chr3 5411120 5411769 -222112809 - Tigger3(Golem) DNA MER2_type -1 3027 2318 405 0 0 0 chr3 5411769 5411814 -222112764 + (CA)n Simple_repeat Simple_repeat 2 46 0 3883 137 82 0 chr3 5411814 5411851 -222112727 - Tigger3(Golem) DNA MER2_type -710 2318 2285 551 192 30 0 chr3 5411859 5411958 -222112620 - Tigger3(Golem) DNA MER2_type -2926 103 2 854 140 0 35 chr3 5412237 5412380 -222112198 - FRAM SINE Alu -1 175 38 1236 227 18 21 chr3 5412789 5413075 -222111503 + MER58B DNA MER1_type 48 332 -9 246 287 122 26 chr3 5413115 5413230 -222111348 - MIR SINE MIR -20 242 117 736 243 86 19 chr3 5414099 5414309 -222110269 - MIR SINE MIR 0 262 39 603 235 176 6 chr3 5416542 5416712 -222107866 - MIR SINE MIR -6 256 58 265 277 57 69 chr3 5417655 5417814 -222106764 - L2 LINE L2 -3 3310 3154 524 289 7 0 chr3 5417957 5418106 -222106472 + MER5C DNA MER1_type 7 156 -168 27 0 0 0 chr3 5418108 5418135 -222106443 + AT_rich Low_complexity Low_complexity 1 27 0 381 266 0 18 chr3 5418480 5418589 -222105989 - L1ME1 LINE L1 -5 6161 6055 403 262 157 58 chr3 5418733 5418905 -222105673 - L1ME LINE L1 -5862 208 20 327 216 119 8 chr3 5418911 5419045 -222105533 + MER5C DNA MER1_type 173 321 -3 365 284 155 14 chr3 5419063 5419211 -222105367 + MER5B DNA MER1_type 7 175 -3 789 196 98 12 chr3 5419754 5419927 -222104651 + MER5A DNA MER1_type 1 188 -1 1269 127 0 0 chr3 5420529 5420732 -222103846 - AluSg/x SINE Alu 0 312 120 253 119 0 0 chr3 5420732 5420771 -222103807 - Alu SINE Alu -266 36 2 1691 177 3 20 chr3 5421760 5422059 -222102519 + AluJb SINE Alu 1 294 -18 1515 232 85 0 chr3 5422245 5422585 -222101993 - Cheshire DNA MER1_type -2051 369 1 1055 249 69 54 chr3 5422587 5423108 -222101470 - L1ME1 LINE L1 -2020 5788 5260 277 303 11 22 chr3 5423126 5423215 -222101363 + L2 LINE L2 3190 3277 -36 421 315 66 39 chr3 5423239 5423525 -222101053 - L1ME1 LINE L1 -913 5233 4940 301 87 0 0 chr3 5423788 5423834 -222100744 - L1MB7 LINE L1 -9 6175 6130 232 191 24 0 chr3 5423900 5423942 -222100636 - L1 LINE L1 -2029 4117 4075 249 330 9 9 chr3 5424618 5424724 -222099854 - MIR SINE MIR -4 258 153 215 292 246 8 chr3 5424742 5424872 -222099706 + MIR SINE MIR 15 175 -87 255 350 131 0 chr3 5424974 5425111 -222099467 - MIR SINE MIR -94 168 14 2488 167 24 17 chr3 5425111 5425572 -222099006 - MLT1C LTR MaLR 0 467 4 21 0 0 0 chr3 5425623 5425644 -222098934 + AT_rich Low_complexity Low_complexity 1 21 0 2906 109 17 45 chr3 5425644 5426110 -222098468 - LTR46 LTR ERV1 -7 453 1 346 282 53 23 chr3 5426133 5426264 -222098314 - MIR SINE MIR -21 241 107 190 340 92 13 chr3 5426546 5426699 -222097879 - L2 LINE L2 -410 2904 2740 703 34 0 0 chr3 5429573 5429661 -222094917 - L1PA3 LINE L1 -1 6154 6067 184 382 6 77 chr3 5430056 5430226 -222094352 + MIR3 SINE MIR 40 197 -11 180 349 0 48 chr3 5430268 5430351 -222094227 + L3 LINE CR1 1488 1566 -11 468 282 75 21 chr3 5431072 5431260 -222093318 - MIR SINE MIR -16 246 49 1433 221 86 45 chr3 5431288 5431732 -222092846 - MLT1C LTR MaLR 0 467 6 196 260 0 65 chr3 5432654 5432731 -222091847 - MIR SINE MIR -83 179 108 192 162 108 0 chr3 5433883 5433920 -222090658 - L2 LINE L2 -75 3238 3198 2401 56 0 3 chr3 5434169 5434471 -222090107 - AluY SINE Alu -10 301 1 2317 70 3 6 chr3 5434577 5434916 -222089662 + AluY SINE Alu 1 338 0 240 347 53 0 chr3 5434930 5435005 -222089573 - L2 LINE L2 -60 3212 3134 193 250 0 23 chr3 5435671 5435715 -222088863 + L2 LINE L2 3214 3256 -16 242 321 19 25 chr3 5435995 5436154 -222088424 - L1ME4a LINE L1 -165 5956 5799 193 242 65 16 chr3 5436555 5436617 -222087961 + L3b LINE CR1 1401 1465 -118 350 289 65 20 chr3 5436836 5437037 -222087541 - L1ME4a LINE L1 -1321 4825 4616 661 260 115 40 chr3 5437351 5437647 -222086931 - L1ME1 LINE L1 -9 6393 6076 520 142 150 0 chr3 5437650 5437770 -222086808 + L1ME LINE L1 5574 5711 -455 * 3249 238 74 3 chr3 5437764 5438696 -222085882 - L1ME1 LINE L1 -1198 5184 4187 * 12183 178 78 9 chr3 5438694 5441642 -222082936 - L1ME1 LINE L1 -3207 3175 5 459 314 66 43 chr3 5441737 5442040 -222082538 + L1ME LINE L1 5494 5803 -318 205 191 16 48 chr3 5442153 5442216 -222082362 + (CATATA)n Simple_repeat Simple_repeat 3 63 0 273 362 58 31 chr3 5442353 5442577 -222082001 - MIR SINE MIR 0 262 33 336 292 149 30 chr3 5444019 5444187 -222080391 - MIR3 SINE MIR -18 190 3 318 340 32 26 chr3 5444387 5444543 -222080035 - MIR3 SINE MIR -19 189 33 22 56 0 0 chr3 5445502 5445538 -222079040 + AT_rich Low_complexity Low_complexity 1 36 0 362 330 58 19 chr3 5446322 5446528 -222078050 + MLT1H LTR MaLR 40 253 -296 187 275 288 0 chr3 5446756 5446836 -222077742 + L2 LINE L2 3162 3264 -8 390 195 121 10 chr3 5446995 5447143 -222077435 - MER20 DNA MER1_type 0 219 1 401 309 46 29 chr3 5447709 5447884 -222076694 + MER5B DNA MER1_type 1 178 0 502 331 89 15 chr3 5447884 5448227 -222076351 + L2 LINE L2 2698 3062 -251 810 128 3 1 chr3 5448230 5448360 -222076218 - L1PA10 LINE L1 -637 5531 5397 4649 81 3 3 chr3 5448360 5448985 -222075593 + L1PA10 LINE L1 5541 6168 0 810 128 3 1 chr3 5448985 5448998 -222075580 - L1P4 LINE L1 -771 5397 5386 461 256 105 42 chr3 5449003 5449194 -222075384 + L2 LINE L2 3105 3307 -6 270 298 158 25 chr3 5449236 5449394 -222075184 - MIR SINE MIR -37 225 47 258 337 101 22 chr3 5449461 5449639 -222074939 + MIR3 SINE MIR 3 194 -14 411 320 130 8 chr3 5449652 5449905 -222074673 + L3 LINE CR1 1288 1571 -6 1209 267 73 9 chr3 5451093 5451434 -222073144 - MLT1E2 LTR MaLR 0 626 264 201 161 0 0 chr3 5452024 5452055 -222072523 + (TATATG)n Simple_repeat Simple_repeat 1 31 0 432 0 0 0 chr3 5452190 5452238 -222072340 + (CA)n Simple_repeat Simple_repeat 2 49 0 554 210 8 8 chr3 5452736 5452855 -222071723 - MLT1D LTR MaLR -65 440 322 1158 206 86 0 chr3 5453288 5453555 -222071023 - ERVL-B1 LTR ERVL -4785 979 690 1987 235 38 8 chr3 5453726 5454352 -222070226 - ERVL-B1 LTR ERVL -5030 624 1 267 109 0 43 chr3 5454356 5454402 -222070176 - MLT2B1 LTR ERVL -4 516 473 289 365 0 0 chr3 5454423 5454508 -222070070 - MIR SINE MIR -62 146 62 351 313 41 27 chr3 5455551 5455698 -222068880 + MIR SINE MIR 96 244 -18 2523 71 0 0 chr3 5455739 5456049 -222068529 - AluY SINE Alu -1 310 1 426 176 88 0 chr3 5456127 5456218 -222068360 + L2 LINE L2 3170 3268 -4 266 293 91 10 chr3 5456224 5456323 -222068255 + MIR SINE MIR 86 192 -70 4781 163 30 5 chr3 5457098 5458136 -222066442 - L1PA16 LINE L1 -3 6163 5102 835 192 123 78 chr3 5458666 5458810 -222065768 + MLT1A1 LTR MaLR 1 137 -228 2293 116 0 3 chr3 5458810 5459113 -222065465 + AluSg SINE Alu 1 302 -8 835 192 123 78 chr3 5459113 5459301 -222065277 + MLT1A1 LTR MaLR 137 348 -17 2657 158 16 28 chr3 5459361 5459862 -222064716 + Tigger1 DNA MER2_type 5 499 -1919 * 9960 138 29 1 chr3 5459860 5461534 -222063044 + Tigger1 DNA MER2_type 694 2414 -4 555 274 27 43 chr3 5461820 5462006 -222062572 + MER5A DNA MER1_type 7 189 0 653 194 47 29 chr3 5462013 5462183 -222062395 + MER5B DNA MER1_type 6 178 0 256 349 113 5 chr3 5462332 5462544 -222062034 + L2 LINE L2 3079 3313 0 536 262 0 0 chr3 5463565 5463706 -222060872 - L1MA10 LINE L1 -4 6330 6190 21 0 0 0 chr3 5464128 5464149 -222060429 + AT_rich Low_complexity Low_complexity 1 21 0 6158 129 83 24 chr3 5464206 5465368 -222059210 - Tigger3b DNA MER2_type 0 1231 1 542 215 18 6 chr3 5465710 5465867 -222058711 + L1M2 LINE L1 5468 5630 -536 189 0 0 0 chr3 5465969 5465990 -222058588 + (TATG)n Simple_repeat Simple_repeat 4 24 0 232 338 59 0 chr3 5466167 5466235 -222058343 + L2 LINE L2 3201 3272 0 309 248 88 40 chr3 5466488 5466613 -222057965 + L1ME LINE L1 5597 5727 -394 419 215 15 0 chr3 5468037 5468143 -222056435 + MER5A DNA MER1_type 4 111 -78 233 321 73 22 chr3 5468438 5468575 -222056003 - MIR SINE MIR -67 195 52 1776 230 113 33 chr3 5468669 5469247 -222055331 - MLT1E2 LTR MaLR 0 626 3 206 103 0 26 chr3 5470330 5470369 -222054209 + (GA)n Simple_repeat Simple_repeat 1 38 0 229 271 42 93 chr3 5471142 5471260 -222053318 - L2 LINE L2 -16 3256 3145 237 263 0 0 chr3 5471361 5471418 -222053160 - L2 LINE L2 -12 3260 3204 601 286 49 16 chr3 5471807 5471992 -222052586 - MIR SINE MIR -61 201 11 230 250 43 43 chr3 5472780 5472872 -222051706 + MIR SINE MIR 96 187 -75 183 283 54 22 chr3 5474179 5474271 -222050307 + MIR SINE MIR 168 262 0 330 303 189 0 chr3 5476527 5476659 -222047919 + MIR SINE MIR 98 254 -8 2561 52 0 0 chr3 5478601 5478909 -222045669 + AluY SINE Alu 1 308 -3 187 304 104 55 chr3 5478928 5479129 -222045449 + MIR3 SINE MIR 2 217 -45 274 299 28 9 chr3 5479450 5479557 -222045021 + MIR3 SINE MIR 90 198 -10 594 220 0 38 chr3 5479598 5479730 -222044848 + MIR3 SINE MIR 71 197 -11 1889 174 17 6 chr3 5479743 5480088 -222044490 + MER93b LTR ERV1 1 349 -24 7048 132 14 18 chr3 5480938 5483041 -222041537 + L1PA13 LINE L1 4052 6139 -24 3119 221 59 9 chr3 5483217 5484490 -222040088 - L1MB7 LINE L1 0 6184 4844 1077 168 16 16 chr3 5484503 5484693 -222039885 - AluJo SINE Alu -11 301 112 956 285 0 12 chr3 5484693 5484939 -222039639 + MIR SINE MIR 3 245 -17 3227 160 22 2 chr3 5485252 5485791 -222038787 + MER44D DNA MER2_type 1 605 0 286 332 103 23 chr3 5486074 5486288 -222038290 - MIR SINE MIR -2 260 30 1395 187 28 0 chr3 5486423 5486707 -222037871 + L1MA4A LINE L1 6001 6292 -11 2333 35 11 0 chr3 5487242 5487529 -222037049 + AluY SINE Alu 1 290 -21 549 80 0 0 chr3 5487544 5487619 -222036959 + (TG)n Simple_repeat Simple_repeat 2 76 0 294 257 109 0 chr3 5487672 5487773 -222036805 - MER103 DNA DNA -46 120 9 455 221 174 35 chr3 5487912 5488084 -222036494 + MER58C DNA MER1_type 1 196 -19 427 288 56 30 chr3 5488297 5488495 -222036083 - L3 LINE CR1 -332 1245 1043 1509 126 16 0 chr3 5488598 5488852 -222035726 - Tigger2 DNA MER2_type 0 2718 2461 3745 150 50 17 chr3 5488918 5489636 -222034942 - Tigger2 DNA MER2_type -1974 744 3 314 284 21 100 chr3 5489700 5489890 -222034688 + MER102a DNA MER1_type 152 326 -4 307 354 0 15 chr3 5490166 5490296 -222034282 + MIR3 SINE MIR 12 139 -69 218 268 0 18 chr3 5491515 5491571 -222033007 + MIR3 SINE MIR 131 185 -23 306 323 144 20 chr3 5491926 5492121 -222032457 - MIR SINE MIR -4 258 40 1605 176 3 24 chr3 5492851 5493181 -222031397 + AluJo SINE Alu 1 324 0 248 292 0 4 chr3 5493839 5493921 -222030657 - MLT1H LTR MaLR -2 550 474 675 234 61 61 chr3 5494019 5494280 -222030298 - MLT1H LTR MaLR -249 300 40 315 0 0 0 chr3 5494306 5494341 -222030237 + (TC)n Simple_repeat Simple_repeat 1 35 0 * 336 102 0 0 chr3 5494340 5494389 -222030189 + (CA)n Simple_repeat Simple_repeat 1 49 0 1315 303 47 45 chr3 5494407 5494935 -222029643 + MLT1K LTR MaLR 23 551 -37 195 42 0 0 chr3 5495063 5495087 -222029491 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 225 65 0 0 chr3 5495974 5496005 -222028573 + (TG)n Simple_repeat Simple_repeat 2 32 0 480 320 100 42 chr3 5496548 5496929 -222027649 - L2 LINE L2 -41 3231 2829 195 222 48 63 chr3 5497284 5497347 -222027231 + L2 LINE L2 3252 3313 0 3659 134 11 0 chr3 5497833 5498354 -222026224 + MER1A DNA MER1_type 1 527 -2 21 36 0 0 chr3 5498521 5498549 -222026029 + AT_rich Low_complexity Low_complexity 1 28 0 3429 168 26 22 chr3 5498737 5499358 -222025220 + L1MB5 LINE L1 5539 6161 -13 23 0 0 0 chr3 5499365 5499388 -222025190 + AT_rich Low_complexity Low_complexity 1 23 0 472 285 58 7 chr3 5499864 5500001 -222024577 - MIR SINE MIR -91 171 28 390 321 45 0 chr3 5500500 5500634 -222023944 + L2 LINE L2 3133 3272 0 417 291 71 0 chr3 5500832 5500959 -222023619 - L2 LINE L2 0 3272 3137 674 332 43 8 chr3 5502244 5502479 -222022099 + MIR SINE MIR 20 262 0 376 278 93 0 chr3 5502621 5502729 -222021849 - MIR3 SINE MIR 0 208 91 369 0 0 0 chr3 5503457 5503498 -222021080 + (T)n Simple_repeat Simple_repeat 1 41 0 328 264 60 39 chr3 5505057 5505239 -222019339 + MIR SINE MIR 77 262 0 254 306 83 0 chr3 5505982 5506090 -222018488 + MIR SINE MIR 73 189 -73 1907 202 58 32 chr3 5506387 5506818 -222017760 + MER74B LTR ERVL 55 496 -126 3951 147 31 38 chr3 5506821 5507537 -222017041 + MER50 LTR ERV1 1 711 -23 785 142 24 8 chr3 5507543 5507670 -222016908 + MER74B LTR ERVL 491 619 -3 29 28 0 0 chr3 5508109 5508145 -222016433 + AT_rich Low_complexity Low_complexity 1 36 0 540 309 124 0 chr3 5508728 5508945 -222015633 + MIR SINE MIR 16 259 -3 188 347 97 35 chr3 5509683 5509713 -222014865 - MER5B DNA MER1_type -1 177 150 1032 62 0 0 chr3 5509713 5509858 -222014720 + (CAT)n Simple_repeat Simple_repeat 1 145 0 553 217 35 0 chr3 5509858 5509973 -222014605 + MER5A DNA MER1_type 49 167 -22 709 297 122 30 chr3 5510843 5511318 -222013260 + L2 LINE L2 2763 3313 0 442 240 68 48 chr3 5511839 5511986 -222012592 + MIR3 SINE MIR 15 168 -63 301 231 106 48 chr3 5512052 5512156 -222012422 - MIR SINE MIR -131 131 22 217 243 63 12 chr3 5512567 5512652 -222011926 + MIR SINE MIR 70 154 -66 392 246 111 8 chr3 5512816 5512942 -222011636 + LTR16C LTR ERVL 353 491 0 2116 178 117 42 chr3 5512974 5513578 -222011000 + MLT1E2 LTR MaLR 1 626 0 256 100 80 0 chr3 5513712 5513762 -222010816 - L1MA9 LINE L1 -38 6274 6221 4488 176 49 59 chr3 5513798 5514845 -222009733 - L1MA9 LINE L1 -38 6274 5211 294 281 65 51 chr3 5515647 5515812 -222008766 - MIR3 SINE MIR -8 200 34 667 282 29 67 chr3 5515885 5516229 -222008349 + L2 LINE L2 2641 2971 -343 597 260 25 69 chr3 5516265 5516416 -222008162 + L2 LINE L2 3119 3260 -53 1645 145 0 11 chr3 5516416 5516678 -222007900 + AluJo SINE Alu 51 309 -3 597 260 25 69 chr3 5516678 5516730 -222007848 + L2 LINE L2 3260 3313 0 404 294 9 9 chr3 5517997 5518106 -222006472 - MIR SINE MIR 0 262 154 666 303 0 15 chr3 5518131 5518329 -222006249 + MIR SINE MIR 19 213 -49 1432 267 75 50 chr3 5518480 5519082 -222005496 - MER21B LTR ERV1 -149 714 98 2585 23 3 10 chr3 5519217 5519516 -222005062 - AluY SINE Alu -14 297 1 210 259 134 9 chr3 5519792 5519904 -222004674 - MIR3 SINE MIR -5 203 78 21 36 0 0 chr3 5520591 5520619 -222003959 + AT_rich Low_complexity Low_complexity 1 28 0 778 250 81 21 chr3 5521042 5521278 -222003300 + MIR SINE MIR 2 251 -11 298 189 0 0 chr3 5522020 5522073 -222002505 - MLT1K LTR MaLR -11 577 525 5842 157 22 24 chr3 5522075 5523152 -222001426 + L1MA9 LINE L1 5237 6312 0 653 270 76 45 chr3 5523157 5523512 -222001066 - MLT1K LTR MaLR -53 535 170 216 270 16 32 chr3 5524014 5524077 -222000501 - L2 LINE L2 0 3313 3252 312 288 135 24 chr3 5524670 5524840 -221999738 + LTR16A LTR ERVL 260 448 -2 296 243 71 48 chr3 5525064 5525206 -221999372 - L2 LINE L2 -4 3268 3011 1729 206 116 12 chr3 5525285 5525708 -221998870 - MLT1C LTR MaLR 0 467 1 218 284 65 110 chr3 5525748 5525903 -221998675 + MIR SINE MIR 10 157 -105 869 296 33 36 chr3 5525944 5526275 -221998303 + MLT1I LTR MaLR 80 409 0 333 318 9 0 chr3 5526276 5526383 -221998195 + MIR SINE MIR 154 261 -1 912 231 62 5 chr3 5526507 5526715 -221997863 - MIR SINE MIR -10 252 33 2579 139 10 5 chr3 5527365 5527753 -221996825 - MLT1B LTR MaLR 0 390 1 255 214 121 79 chr3 5528067 5528207 -221996371 - MIR SINE MIR -51 211 66 1715 126 4 12 chr3 5528217 5528472 -221996106 - AluJb SINE Alu -43 269 17 21 0 0 0 chr3 5528519 5528540 -221996038 + AT_rich Low_complexity Low_complexity 1 21 0 21 57 0 0 chr3 5529213 5529248 -221995330 + AT_rich Low_complexity Low_complexity 1 35 0 500 297 106 29 chr3 5529323 5529512 -221995066 - L1ME4a LINE L1 -216 5905 5732 2109 100 7 0 chr3 5529512 5529821 -221994757 + AluSx SINE Alu 1 311 0 500 297 106 29 chr3 5529821 5529970 -221994608 - L1ME4a LINE L1 -389 5732 5540 6796 90 17 0 chr3 5530160 5531224 -221993354 - L1PA12 LINE L1 0 6168 5104 206 273 0 0 chr3 5532582 5532626 -221991952 - L2 LINE L2 -7 3306 3263 * 220 314 119 22 chr3 5532593 5532778 -221991800 - MIR SINE MIR -12 250 48 1500 133 0 0 chr3 5533116 5533341 -221991237 - L1P LINE L1 -1032 5114 4890 347 265 71 0 chr3 5533969 5534067 -221990511 - MIR3 SINE MIR -23 185 81 272 195 13 39 chr3 5534325 5534402 -221990176 + T-rich Low_complexity Low_complexity 4 78 0 2784 229 21 57 chr3 5534656 5535373 -221989205 - LTR8 LTR ERV1 0 691 1 439 244 15 69 chr3 5535686 5535817 -221988761 + MIR SINE MIR 47 170 -92 574 255 16 10 chr3 5536071 5536250 -221988328 - MLT1C LTR MaLR 0 467 323 508 62 0 0 chr3 5536259 5536323 -221988255 - MADE1 DNA Mariner 0 80 17 1894 199 26 46 chr3 5536325 5536783 -221987795 + LTR2 LTR ERV1 1 449 0 987 196 49 85 chr3 5536798 5537104 -221987474 - MLT1C LTR MaLR -172 295 1 189 49 24 49 chr3 5537148 5537189 -221987389 + (TTATA)n Simple_repeat Simple_repeat 3 42 0 1557 239 59 11 chr3 5537312 5537684 -221986894 - MLT1B LTR MaLR 0 390 1 271 270 36 36 chr3 5538701 5538812 -221985766 - L2 LINE L2 0 3313 3203 304 197 53 92 chr3 5540006 5540158 -221984420 - L1MC5 LINE L1 -166 7795 7650 267 337 163 0 chr3 5540224 5540390 -221984188 + MIR SINE MIR 69 261 -1 746 312 69 52 chr3 5540469 5540930 -221983648 + L2 LINE L2 1894 2362 -952 1416 279 22 16 chr3 5541052 5541421 -221983157 - MLT1G1 LTR MaLR -209 386 16 654 309 94 62 chr3 5541421 5542211 -221982367 + L2 LINE L2 2348 3170 -143 2947 204 65 24 chr3 5542211 5542837 -221981741 + MER82 DNA MER2_type 1 652 -1 654 309 94 62 chr3 5542837 5542936 -221981642 + L2 LINE L2 3170 3264 -49 2193 128 0 0 chr3 5543126 5543423 -221981155 + AluSx SINE Alu 6 302 -10 255 133 0 0 chr3 5545187 5545232 -221979346 + (CA)n Simple_repeat Simple_repeat 1 45 0 2505 134 59 20 chr3 5545566 5545975 -221978603 - MSTA LTR MaLR 0 428 4 918 236 90 55 chr3 5546026 5546369 -221978209 + LTR16C LTR ERVL 17 371 -120 1501 225 35 52 chr3 5546389 5546793 -221977785 - MER21B LTR ERV1 -107 756 360 1238 190 0 5 chr3 5546831 5547047 -221977531 + AluJo SINE Alu 84 298 -14 534 172 57 146 chr3 5547098 5547290 -221977288 - MER21B LTR ERV1 -676 187 13 439 195 80 9 chr3 5547306 5547419 -221977159 + LTR16C LTR ERVL 371 491 0 2483 63 0 3 chr3 5549306 5549627 -221974951 + AluY SINE Alu 11 330 0 2194 144 57 36 chr3 5549733 5550121 -221974457 - MSTD LTR MaLR 0 396 1 311 254 9 118 chr3 5550712 5550822 -221973756 + MER81 DNA DNA 1 98 -16 248 265 81 37 chr3 5550927 5551063 -221973515 + MER20B DNA MER1_type 495 636 -147 272 187 53 67 chr3 5553309 5553384 -221971194 + MIR SINE MIR 31 104 -104 1252 198 108 35 chr3 5553392 5553440 -221971138 - MLT2B1 LTR ERVL 0 414 371 2730 96 19 16 chr3 5553440 5553803 -221970775 + THE1B LTR MaLR 1 364 0 1252 198 108 35 chr3 5553803 5554184 -221970394 - MLT2B1 LTR ERVL -43 371 1 1942 141 18 0 chr3 5554279 5554563 -221970015 - AluSx SINE Alu -15 297 9 1311 219 15 8 chr3 5554563 5554828 -221969750 - MLT1H LTR MaLR -275 274 8 245 268 18 0 chr3 5555152 5555208 -221969370 - MER102b DNA MER1_type 0 330 274 1814 193 0 0 chr3 5555318 5555613 -221968965 + AluJo SINE Alu 1 295 -17 661 194 12 0 chr3 5555624 5555784 -221968794 + GA-rich Low_complexity Low_complexity 1 162 0 299 348 17 8 chr3 5555857 5555975 -221968603 - MIR3 SINE MIR -49 159 41 795 183 0 0 chr3 5556958 5557078 -221967500 + FLAM_A SINE Alu 1 120 -13 286 226 250 32 chr3 5557512 5557636 -221966942 + MIR3 SINE MIR 33 183 -25 437 259 64 64 chr3 5557692 5557958 -221966620 - L2 LINE L2 -1 3312 3047 231 250 0 0 chr3 5558001 5558049 -221966529 + MIR SINE MIR 69 116 -92 921 241 0 5 chr3 5558053 5558244 -221966334 - MLT1D LTR MaLR 0 505 316 1132 246 113 19 chr3 5558362 5558732 -221965846 - MLT1E2 LTR MaLR -221 405 1 2647 24 0 0 chr3 5558841 5559138 -221965440 - AluYb8 SINE Alu -3 315 19 1971 139 85 20 chr3 5559249 5559601 -221964977 - THE1C LTR MaLR 0 375 1 443 275 126 33 chr3 5560490 5560672 -221963906 + MIR SINE MIR 58 256 -6 369 319 35 0 chr3 5560809 5560922 -221963656 + L2 LINE L2 3155 3271 -1 8225 22 0 0 chr3 5561127 5562592 -221961986 - L1PA2 LINE L1 0 6155 4691 14488 37 1 3 chr3 5562592 5564337 -221960241 + L1PA2 LINE L1 2961 4702 -1444 627 242 56 25 chr3 5564341 5564502 -221960076 - MIR SINE MIR -73 189 24 189 0 0 0 chr3 5564519 5564540 -221960038 + (TTTTA)n Simple_repeat Simple_repeat 2 22 0 773 233 41 116 chr3 5565437 5565781 -221958797 + MER102b DNA MER1_type 2 319 -22 219 293 89 57 chr3 5565781 5565904 -221958674 - MIR3 SINE MIR -54 154 28 345 317 0 0 chr3 5566042 5566124 -221958454 - L2 LINE L2 0 3313 3232 322 293 95 0 chr3 5566262 5566378 -221958200 - MIR SINE MIR -71 191 65 323 263 61 44 chr3 5566508 5566622 -221957956 + MIR3 SINE MIR 47 162 -46 4526 28 4 0 chr3 5567641 5568143 -221956435 - L1PA4 LINE L1 -1 6154 5651 246 289 33 22 chr3 5568946 5569036 -221955542 - MER94 DNA DNA 0 134 44 1272 169 132 33 chr3 5569090 5569362 -221955216 - AluJb SINE Alu -13 299 1 22 0 0 0 chr3 5569809 5569831 -221954747 + AT_rich Low_complexity Low_complexity 1 22 0 3633 201 49 27 chr3 5570054 5570556 -221954022 + L1MB7 LINE L1 5227 5760 -424 1678 141 11 67 chr3 5570556 5570691 -221953887 + AluJb SINE Alu 11 123 -189 2312 91 7 0 chr3 5570691 5570987 -221953591 + AluY SINE Alu 1 298 -13 1678 141 11 67 chr3 5570987 5571135 -221953443 + AluJb SINE Alu 123 278 -34 3633 201 49 27 chr3 5571135 5571532 -221953046 + L1MB7 LINE L1 5760 6147 -37 1227 126 0 6 chr3 5571537 5571704 -221952874 + AluSg/x SINE Alu 131 296 -16 283 87 22 0 chr3 5571706 5571752 -221952826 + L1MB8 LINE L1 6132 6178 0 425 289 0 18 chr3 5571962 5572076 -221952502 + MIR SINE MIR 36 147 -61 1861 168 3 0 chr3 5572440 5572731 -221951847 + AluJb SINE Alu 1 292 -20 2126 135 0 0 chr3 5572741 5573037 -221951541 + AluSg SINE Alu 1 296 -14 671 183 56 7 chr3 5573795 5573937 -221950641 + MER20 DNA MER1_type 6 154 -65 * 1277 215 93 31 chr3 5573930 5574284 -221950294 - LTR52 LTR ERVL -42 379 4 441 195 12 0 chr3 5574286 5574368 -221950210 + MER20 DNA MER1_type 137 219 0 1030 258 28 60 chr3 5574505 5574858 -221949720 + LTR16A LTR ERVL 103 444 -6 432 204 60 156 chr3 5574860 5575129 -221949449 + MER112 DNA MER1_type 18 260 0 387 292 71 60 chr3 5575759 5575927 -221948651 - MIR3 SINE MIR -22 186 17 256 336 68 20 chr3 5576833 5576979 -221947599 + MIR3 SINE MIR 34 186 -22 390 265 121 8 chr3 5577256 5577388 -221947190 + MIR SINE MIR 104 250 -12 183 42 0 0 chr3 5577403 5577427 -221947151 + (TTTTTG)n Simple_repeat Simple_repeat 2 25 0 5045 139 49 14 chr3 5577524 5578397 -221946181 - MER4D LTR ERV1 -2 869 1 2587 110 11 8 chr3 5578411 5578765 -221945813 + THE1A LTR MaLR 1 355 0 226 351 85 0 chr3 5579296 5579390 -221945188 - L2 LINE L2 -2 3270 3169 213 239 0 22 chr3 5579460 5579506 -221945072 - L2 LINE L2 -18 3254 3210 682 279 181 85 chr3 5579525 5580489 -221944089 - L3 LINE CR1 -90 1487 431 216 0 0 0 chr3 5582333 5582357 -221942221 + (TA)n Simple_repeat Simple_repeat 2 25 0 192 97 0 0 chr3 5584568 5584599 -221939979 + (CA)n Simple_repeat Simple_repeat 1 31 0 431 143 0 39 chr3 5584772 5584849 -221939729 + AluY SINE Alu 208 281 -30 452 308 104 11 chr3 5585749 5586009 -221938569 - L2 LINE L2 0 3313 3030 269 238 179 12 chr3 5586635 5586719 -221937859 - MER5A DNA MER1_type -83 106 9 550 250 57 6 chr3 5586735 5586910 -221937668 - Charlie2 DNA MER1_type 0 2862 2679 1208 205 8 63 chr3 5586910 5587290 -221937288 - THE1C LTR MaLR 0 375 17 1043 141 29 0 chr3 5587459 5587629 -221936949 - MLT1C LTR MaLR -285 182 8 1692 76 5 0 chr3 5587689 5587899 -221936679 + AluY SINE Alu 86 296 -15 12183 120 19 44 chr3 5587923 5588067 -221936511 + Tigger1 DNA MER2_type 1 147 -2271 1194 107 60 0 chr3 5588067 5588235 -221936343 - L1PB3 LINE L1 -1 6153 5976 12183 120 19 44 chr3 5588235 5588829 -221935749 + Tigger1 DNA MER2_type 147 755 -1663 2076 123 23 13 chr3 5588829 5589101 -221935477 + AluSq SINE Alu 1 278 -35 1113 71 24 0 chr3 5589101 5589269 -221935309 + (GAAA)n Simple_repeat Simple_repeat 2 173 0 2076 123 23 13 chr3 5589269 5589306 -221935272 + AluSq SINE Alu 278 313 0 12183 120 19 44 chr3 5589306 5590551 -221934027 + Tigger1 DNA MER2_type 755 1934 -484 2387 150 20 93 chr3 5590551 5591044 -221933534 - LTR32 LTR ERVL 0 471 15 3196 140 10 6 chr3 5591044 5591530 -221933048 + Tigger1 DNA MER2_type 1930 2417 -1 435 274 42 53 chr3 5591630 5591820 -221932758 - MIR SINE MIR -36 226 39 299 452 25 0 chr3 5592013 5592170 -221932408 - L2 LINE L2 -12 3260 3100 * 616 292 31 5 chr3 5592168 5592360 -221932218 - MIR SINE MIR -1 261 65 343 304 9 9 chr3 5592563 5592678 -221931900 + MIR SINE MIR 137 251 -11 240 289 22 44 chr3 5592974 5593064 -221931514 + L3 LINE CR1 1488 1575 -2 466 305 72 6 chr3 5594346 5594513 -221930065 + MIR SINE MIR 37 214 -48 859 73 47 80 chr3 5595113 5595128 -221929450 + L1MA5A LINE L1 6153 6167 -130 1996 148 40 35 chr3 5595128 5595501 -221929077 + THE1C LTR MaLR 1 375 0 859 73 47 80 chr3 5595501 5595609 -221928969 + L1MA5A LINE L1 6167 6273 -24 495 105 53 0 chr3 5595609 5595635 -221928943 + MADE1 DNA Mariner 1 24 -56 2284 88 19 10 chr3 5595635 5595943 -221928635 - AluY SINE Alu 0 311 1 495 105 53 0 chr3 5595943 5595992 -221928586 + MADE1 DNA Mariner 24 80 0 859 73 47 80 chr3 5595992 5596017 -221928561 + L1MA5A LINE L1 6273 6297 0 1264 195 20 28 chr3 5596731 5597062 -221927516 - MLT2B3 LTR ERVL 0 554 231 1539 155 39 0 chr3 5597074 5597332 -221927246 - MLT2A2 LTR ERVL -185 268 1 832 287 108 25 chr3 5597426 5597740 -221926838 + MER102b DNA MER1_type 2 341 0 205 288 82 0 chr3 5597842 5597915 -221926663 + L2 LINE L2 3235 3313 0 239 281 67 11 chr3 5597923 5598012 -221926566 - L3 LINE CR1 -522 1055 962 409 309 65 12 chr3 5599240 5599431 -221925147 - MIR SINE MIR -43 219 18 321 272 25 0 chr3 5599542 5599623 -221924955 - MER81 DNA DNA -5 109 27 280 184 0 20 chr3 5599646 5599695 -221924883 - MER81 DNA DNA -66 48 1 2554 124 5 22 chr3 5599874 5600244 -221924334 + THE1B LTR MaLR 1 364 0 335 320 49 0 chr3 5600502 5600624 -221923954 - MIR SINE MIR -32 230 103 405 263 75 0 chr3 5601551 5601684 -221922894 + LTR67 LTR ERVL 403 545 -12 1748 182 0 10 chr3 5601737 5602045 -221922533 - AluSx SINE Alu -7 305 1 181 263 288 12 chr3 5602131 5602211 -221922367 - MIR SINE MIR -63 145 44 2365 76 0 22 chr3 5602302 5602619 -221921959 + AluY SINE Alu 1 310 -1 321 318 77 43 chr3 5602955 5603188 -221921390 + MIR SINE MIR 5 245 -17 468 193 0 0 chr3 5603750 5603859 -221920719 + (TA)n Simple_repeat Simple_repeat 2 110 0 314 192 0 26 chr3 5603936 5604014 -221920564 + (CATA)n Simple_repeat Simple_repeat 2 77 0 261 276 35 0 chr3 5604014 5604101 -221920477 + L1MC4 LINE L1 6614 6703 -1339 231 272 0 22 chr3 5604093 5604185 -221920393 - L1MC4 LINE L1 -1339 6703 6614 * 357 208 0 0 chr3 5604186 5604263 -221920315 + (TA)n Simple_repeat Simple_repeat 1 77 0 316 283 0 22 chr3 5604263 5604355 -221920223 - L1MC4 LINE L1 -1339 6703 6614 239 267 47 0 chr3 5604365 5604451 -221920127 - L1MC4 LINE L1 -1339 6703 6614 435 211 0 0 chr3 5604452 5604547 -221920031 + (TA)n Simple_repeat Simple_repeat 2 96 0 229 261 0 22 chr3 5604547 5604639 -221919939 - L1MC4 LINE L1 -1339 6703 6614 252 214 0 0 chr3 5604640 5604696 -221919882 + (TA)n Simple_repeat Simple_repeat 1 56 0 1883 128 25 4 chr3 5605182 5605456 -221919122 - AluSc SINE Alu -29 280 1 6868 201 60 9 chr3 5606061 5608078 -221916500 + L1MB2 LINE L1 3678 5785 -386 2003 127 43 0 chr3 5608071 5608394 -221916184 - L1P LINE L1 -989 5157 4821 * 2844 67 6 11 chr3 5608394 5608751 -221915827 + L1PA10 LINE L1 5808 6164 -4 198 71 0 0 chr3 5609888 5609916 -221914662 + (CA)n Simple_repeat Simple_repeat 2 29 0 2122 132 90 3 chr3 5609917 5610282 -221914296 + L1MB2 LINE L1 5773 6169 -2 387 209 9 67 chr3 5610921 5610997 -221913581 + MIR SINE MIR 30 100 -162 2036 165 45 8 chr3 5610997 5611349 -221913229 + MER47A DNA MER2_type 2 366 0 387 209 9 67 chr3 5611349 5611377 -221913201 + MIR SINE MIR 100 128 -134 2901 94 20 5 chr3 5611472 5611864 -221912714 + MLT2A1 LTR ERVL 1 398 -46 26 64 0 0 chr3 5611864 5611911 -221912667 + AT_rich Low_complexity Low_complexity 1 47 0 232 154 0 19 chr3 5611911 5611963 -221912615 + LTR66 LTR ERVL 404 454 -156 * 249 62 167 21 chr3 5611933 5611981 -221912597 + MLT2A1 LTR ERVL 399 453 0 44384 65 17 11 chr3 5611981 5614622 -221909956 + HERVL-A1-A1 LTR ERVL 1 2623 -3031 2982 6 0 0 chr3 5614622 5614940 -221909638 - AluYb8 SINE Alu 0 318 1 44384 65 17 11 chr3 5614940 5617914 -221906664 + HERVL-A1-A1 LTR ERVL 2623 5654 0 2656 85 66 33 chr3 5617914 5618309 -221906269 + MLT2A1 LTR ERVL 1 412 -32 248 0 31 0 chr3 5618309 5618341 -221906237 + (TA)n Simple_repeat Simple_repeat 1 33 0 2656 85 66 33 chr3 5618341 5618368 -221906210 + MLT2A1 LTR ERVL 412 437 -7 243 214 71 0 chr3 5618832 5618888 -221905690 - MER101 LTR ERV1 -146 328 269 828 234 100 13 chr3 5619159 5619398 -221905180 + MIR SINE MIR 3 262 0 181 378 41 10 chr3 5619995 5620093 -221904485 + MIR3 SINE MIR 11 111 -97 225 170 64 0 chr3 5620225 5620272 -221904306 + CT-rich Low_complexity Low_complexity 4 53 0 258 198 143 66 chr3 5620428 5620519 -221904059 - Charlie8 DNA MER1_type -2319 98 1 208 191 117 117 chr3 5621519 5621613 -221902965 - MIR3 SINE MIR -15 193 100 585 249 127 5 chr3 5622706 5622911 -221901667 + MIR SINE MIR 20 249 -13 540 239 57 19 chr3 5623079 5623238 -221901340 - MIR SINE MIR -84 178 14 588 311 31 40 chr3 5624211 5624433 -221900145 - MIR SINE MIR -15 247 28 243 294 9 64 chr3 5624506 5624615 -221899963 + L2 LINE L2 3193 3295 -18 579 271 94 10 chr3 5625103 5625295 -221899283 + MER3 DNA MER1_type 2 209 0 317 262 82 47 chr3 5625306 5625463 -221899115 - MER5A DNA MER1_type -10 179 7 190 359 47 0 chr3 5625657 5625721 -221898857 + L2 LINE L2 3186 3252 -20 215 286 16 0 chr3 5626133 5626196 -221898382 + L2 LINE L2 3209 3272 0 189 0 0 0 chr3 5626400 5626421 -221898157 + (CAA)n Simple_repeat Simple_repeat 1 21 0 229 356 59 0 chr3 5626531 5626632 -221897946 + MIR SINE MIR 107 213 -49 2142 148 22 63 chr3 5626709 5627155 -221897423 + MLT1C LTR MaLR 36 463 -4 1754 166 28 7 chr3 5627187 5627476 -221897102 + AluJo SINE Alu 1 295 -17 24 0 0 0 chr3 5628757 5628781 -221895797 + AT_rich Low_complexity Low_complexity 1 24 0 658 191 0 48 chr3 5629399 5629500 -221895078 + MLT2B2 LTR ERVL 376 469 -46 180 0 0 0 chr3 5629500 5629520 -221895058 + (CAAT)n Simple_repeat Simple_repeat 3 22 0 658 191 0 48 chr3 5629520 5629565 -221895013 + MLT2B2 LTR ERVL 469 515 0 355 200 45 3 chr3 5631144 5631262 -221893316 - MER63A DNA MER1_type -37 173 14 373 280 0 51 chr3 5631446 5631529 -221893049 - LTR33 LTR ERVL -7 514 441 1115 208 76 90 chr3 5631529 5631961 -221892617 - MSTC LTR MaLR -2 426 1 373 280 0 51 chr3 5631961 5632034 -221892544 - LTR33 LTR ERVL -80 441 366 527 203 23 30 chr3 5632036 5632169 -221892409 - LTR33 LTR ERVL -389 132 1 258 371 44 46 chr3 5632181 5632569 -221892009 - L2 LINE L2 -558 2756 2370 350 233 56 0 chr3 5632599 5632689 -221891889 + LTR33 LTR ERVL 163 257 -264 258 301 102 18 chr3 5632782 5632948 -221891630 - L2 LINE L2 -1003 2311 2132 189 0 0 0 chr3 5633640 5633661 -221890917 + (T)n Simple_repeat Simple_repeat 1 21 0 548 310 144 53 chr3 5633968 5634384 -221890194 + L2 LINE L2 2857 3310 -3 431 305 147 10 chr3 5634387 5634584 -221889994 - MIR SINE MIR -19 243 20 236 333 66 105 chr3 5634999 5635227 -221889351 - L2 LINE L2 -6 3266 3048 308 242 121 0 chr3 5635254 5635345 -221889233 + MIR SINE MIR 73 174 -88 962 204 0 17 chr3 5635738 5635914 -221888664 - AluJb SINE Alu -3 309 137 204 300 0 0 chr3 5636078 5636128 -221888450 - MIR SINE MIR -14 248 199 417 277 97 35 chr3 5636616 5636808 -221887770 - MIR SINE MIR -12 250 57 2099 122 0 3 chr3 5637031 5637327 -221887251 + AluSx SINE Alu 1 295 -17 198 0 0 0 chr3 5638010 5638032 -221886546 + (TTCA)n Simple_repeat Simple_repeat 1 22 0 533 296 69 0 chr3 5638057 5638216 -221886362 + MIR SINE MIR 76 245 -17 749 177 62 77 chr3 5640273 5640482 -221884096 - MER20 DNA MER1_type -13 206 1 255 255 0 0 chr3 5640617 5640668 -221883910 + L2 LINE L2 3263 3313 0 210 338 0 26 chr3 5642207 5642284 -221882294 - MIR SINE MIR -55 153 79 22 35 0 0 chr3 5642959 5642988 -221881590 + AT_rich Low_complexity Low_complexity 1 29 0 204 308 12 47 chr3 5646061 5646230 -221878348 + C-rich Low_complexity Low_complexity 5 167 0 231 88 0 0 chr3 5646641 5646675 -221877903 + (GGA)n Simple_repeat Simple_repeat 3 36 0 21 57 0 0 chr3 5647156 5647191 -221877387 + GC_rich Low_complexity Low_complexity 1 35 0 791 243 56 42 chr3 5648701 5648915 -221875663 + MIR SINE MIR 28 244 -18 207 0 0 0 chr3 5650265 5650288 -221874290 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 447 283 9 9 chr3 5650386 5650492 -221874086 - MER81 DNA DNA 0 114 9 2755 105 11 3 chr3 5650653 5651014 -221873564 - THE1B LTR MaLR 0 364 1 271 236 0 18 chr3 5651015 5651070 -221873508 - MIR3 SINE MIR -46 162 109 358 192 0 14 chr3 5651237 5651310 -221873268 - L1ME4a LINE L1 -249 5872 5801 22 0 0 0 chr3 5651497 5651519 -221873059 + AT_rich Low_complexity Low_complexity 1 22 0 329 327 62 0 chr3 5651698 5651811 -221872767 + MIR SINE MIR 1 120 -142 425 152 0 0 chr3 5651859 5651925 -221872653 + L1PA16 LINE L1 6095 6160 -6 4403 152 19 32 chr3 5651934 5652083 -221872495 + L1MB3 LINE L1 5386 5536 -647 2625 112 67 45 chr3 5652083 5652502 -221872076 + MSTA LTR MaLR 1 428 0 4403 152 19 32 chr3 5652502 5652772 -221871806 + L1MB3 LINE L1 5536 5808 -375 2506 111 36 30 chr3 5652772 5653134 -221871444 - THE1B LTR MaLR 0 364 1 4403 152 19 32 chr3 5653134 5653522 -221871056 + L1MB3 LINE L1 5808 6183 0 669 245 164 45 chr3 5653568 5653927 -221870651 - MLT1J1 LTR MaLR 0 446 45 377 323 0 0 chr3 5654952 5655045 -221869533 - MIR3 SINE MIR -7 201 109 291 274 16 0 chr3 5655099 5655161 -221869417 - MIR SINE MIR -108 100 38 1565 158 36 37 chr3 5655243 5655719 -221868859 + L1M2 LINE L1 5088 5562 -729 226 180 0 20 chr3 5655764 5655814 -221868764 + L1MCa LINE L1 2016 2064 -4362 * 278 261 23 0 chr3 5655801 5655889 -221868689 + L1MC4 LINE L1 6614 6703 -1339 2604 165 34 25 chr3 5656039 5656652 -221867926 - pTR5 LTR ERV1 -1075 1363 745 230 152 0 0 chr3 5656655 5656688 -221867890 - Alu SINE Alu -265 34 2 635 261 159 8 chr3 5656722 5656979 -221867599 - L1ME3A LINE L1 -191 5979 5684 1242 124 10 38 chr3 5657242 5657451 -221867127 + AluSg/x SINE Alu 105 307 -5 261 57 0 0 chr3 5659239 5659274 -221865304 + (CA)n Simple_repeat Simple_repeat 2 36 0 480 354 28 6 chr3 5660357 5660538 -221864040 + MIR SINE MIR 3 187 -75 2528 153 88 7 chr3 5662101 5662533 -221862045 - MLT1C LTR MaLR 0 467 1 1375 233 102 32 chr3 5663266 5663738 -221860840 - MLT1D LTR MaLR 0 505 1 1626 154 42 19 chr3 5664352 5664664 -221859914 + L1MB3 LINE L1 5863 6181 -2 299 229 60 78 chr3 5664890 5665056 -221859522 + LTR16A1 LTR ERVL 245 407 -50 2052 149 10 0 chr3 5665416 5665725 -221858853 + AluSx SINE Alu 1 312 0 951 208 137 35 chr3 5666003 5666316 -221858262 - LTR37A LTR ERV1 -4 422 78 890 201 0 18 chr3 5666317 5666481 -221858097 + FRAM SINE Alu 3 163 -3 1484 190 4 11 chr3 5666545 5666819 -221857759 + AluJo SINE Alu 40 311 -1 454 234 128 0 chr3 5666940 5667081 -221857497 + MER103 DNA DNA 8 166 0 518 350 16 40 chr3 5667696 5667946 -221856632 + MIR SINE MIR 9 250 -12 484 192 46 15 chr3 5668106 5668236 -221856342 - MER113 DNA MER1_type? -386 135 2 319 286 216 12 chr3 5668240 5668394 -221856184 + L3 LINE CR1 1288 1409 -168 2920 181 11 29 chr3 5668394 5668914 -221855664 + MLT2B2 LTR ERVL 1 511 -4 319 286 216 12 chr3 5668914 5669000 -221855578 + L3 LINE CR1 1409 1577 0 375 60 0 0 chr3 5669496 5669546 -221855032 + (CA)n Simple_repeat Simple_repeat 2 51 0 380 248 90 35 chr3 5669900 5670045 -221854533 - MIR SINE MIR -36 226 74 331 260 72 27 chr3 5670089 5670240 -221854338 - MIR3 SINE MIR -30 178 28 189 225 0 0 chr3 5670412 5670452 -221854126 - MIR SINE MIR -13 249 210 288 360 0 0 chr3 5670553 5670653 -221853925 - MIR SINE MIR -76 132 33 311 255 39 98 chr3 5670813 5670966 -221853612 + L1M2a LINE L1 610 753 -6415 245 270 27 14 chr3 5671531 5671605 -221852973 + MIR SINE MIR 81 155 -107 414 325 36 60 chr3 5671669 5671761 -221852817 + L2 LINE L2 3111 3199 -73 740 236 83 126 chr3 5671761 5672269 -221852309 - LTR16C LTR ERVL -3 488 3 414 325 36 60 chr3 5672269 5672342 -221852236 + L2 LINE L2 3199 3272 0 280 233 50 0 chr3 5672552 5672612 -221851966 + L2 LINE L2 3198 3260 -12 368 218 65 73 chr3 5672953 5673259 -221851319 + MLT1H LTR MaLR 206 549 0 21 36 0 0 chr3 5675041 5675069 -221849509 + AT_rich Low_complexity Low_complexity 1 28 0 516 266 50 50 chr3 5675125 5675186 -221849392 + MIR SINE MIR 41 101 -161 1636 210 83 38 chr3 5675186 5675629 -221848949 - MLT1C LTR MaLR 0 467 5 516 266 50 50 chr3 5675629 5675789 -221848789 + MIR SINE MIR 100 262 0 399 313 22 15 chr3 5676220 5676354 -221848224 + MIR SINE MIR 20 154 -108 2662 154 0 5 chr3 5676387 5676809 -221847769 + L1MB3 LINE L1 5757 6176 -7 25 0 0 0 chr3 5676809 5676834 -221847744 + AT_rich Low_complexity Low_complexity 1 25 0 484 299 41 7 chr3 5677062 5677209 -221847369 + MIR3 SINE MIR 14 165 -43 677 112 45 15 chr3 5677474 5677608 -221846970 + L1MB2 LINE L1 6034 6171 0 2097 145 0 0 chr3 5677908 5678218 -221846360 + AluJb SINE Alu 1 310 -2 500 346 121 32 chr3 5678510 5678857 -221845721 - L2 LINE L2 0 3272 2895 2346 100 0 3 chr3 5679129 5679439 -221845139 + AluSx SINE Alu 1 309 -3 2622 148 54 6 chr3 5680729 5681249 -221843329 - L1MC1 LINE L1 -18 6315 5727 283 346 60 39 chr3 5681325 5681507 -221843071 - L3 LINE CR1 -32 1545 1360 2143 87 52 16 chr3 5681595 5681801 -221842777 - L1PA12 LINE L1 -2 6166 5944 3201 119 2 5 chr3 5681801 5682236 -221842342 - MER57B LTR ERV1 0 434 1 2143 87 52 16 chr3 5682236 5682339 -221842239 - L1PA12 LINE L1 -224 5944 5846 375 331 192 23 chr3 5682504 5682894 -221841684 - L3 LINE CR1 -346 1231 776 546 300 95 71 chr3 5682985 5683481 -221841097 - L2 LINE L2 -1 3312 2805 24 32 0 0 chr3 5683873 5683904 -221840674 + AT_rich Low_complexity Low_complexity 1 31 0 213 250 77 0 chr3 5684194 5684246 -221840332 - L2 LINE L2 0 3272 3217 1069 211 5 0 chr3 5684252 5684446 -221840132 + MER63A DNA MER1_type 5 199 -11 410 324 53 79 chr3 5684461 5685051 -221839527 - L2 LINE L2 -51 3221 2661 570 90 13 0 chr3 5685180 5685258 -221839320 - MADE1 DNA Mariner -1 79 1 798 207 19 58 chr3 5685519 5685727 -221838851 + MER3 DNA MER1_type 1 200 -9 229 322 0 0 chr3 5686537 5686596 -221837982 - L2 LINE L2 -2 3311 3253 2144 117 0 0 chr3 5687255 5687545 -221837033 - AluSc SINE Alu -12 297 8 310 324 94 18 chr3 5687765 5687935 -221836643 - MIR SINE MIR -65 197 15 190 250 54 0 chr3 5688666 5688722 -221835856 - MIR SINE MIR -79 183 125 334 308 0 34 chr3 5690472 5690589 -221833989 - MIR3 SINE MIR -90 118 6 950 272 66 11 chr3 5690700 5690987 -221833591 + MER102b DNA MER1_type 21 323 -18 2337 179 10 0 chr3 5691166 5691563 -221833015 - MER57A LTR ERV1 0 403 3 424 91 0 26 chr3 5691756 5691833 -221832745 + (TTCC)n Simple_repeat Simple_repeat 2 76 0 192 263 225 0 chr3 5691887 5691967 -221832611 - L2 LINE L2 -1 3312 3215 531 289 65 47 chr3 5692217 5692449 -221832129 - MIR SINE MIR -10 252 17 303 28 0 0 chr3 5692522 5692558 -221832020 + (CA)n Simple_repeat Simple_repeat 2 37 0 1154 86 0 0 chr3 5693061 5693213 -221831365 + AluY SINE Alu 160 311 0 471 304 104 11 chr3 5694087 5694347 -221830231 - L2 LINE L2 0 3313 3030 548 291 57 40 chr3 5694595 5694822 -221829756 + MIR SINE MIR 20 250 -12 22 0 0 0 chr3 5695234 5695256 -221829322 + AT_rich Low_complexity Low_complexity 1 22 0 252 266 0 0 chr3 5696210 5696274 -221828304 - MER117 DNA MER1_type -119 78 15 397 302 78 0 chr3 5698317 5698514 -221826064 - MIR SINE MIR 0 262 50 193 294 206 10 chr3 5698955 5699057 -221825521 - MIR SINE MIR -138 124 3 366 367 6 28 chr3 5699393 5699573 -221825005 - MIR3 SINE MIR -10 198 23 275 360 74 46 chr3 5699807 5699982 -221824596 + L3 LINE CR1 214 393 -1184 815 346 99 9 chr3 5700221 5700470 -221824108 + L3 LINE CR1 400 625 -952 210 37 0 0 chr3 5700470 5700497 -221824081 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 815 346 99 9 chr3 5700497 5700701 -221823877 + L3 LINE CR1 625 894 -683 1053 179 10 0 chr3 5701056 5701251 -221823327 - MER58 DNA MER1_type -2187 233 37 198 0 0 0 chr3 5701283 5701305 -221823273 + (TGAA)n Simple_repeat Simple_repeat 1 22 0 331 44 0 0 chr3 5701735 5701800 -221822778 + AluY SINE Alu 237 301 0 1666 210 57 7 chr3 5702671 5703109 -221821469 - MLT1C LTR MaLR 0 467 8 1716 71 5 0 chr3 5703169 5703379 -221821199 + AluY SINE Alu 86 296 -15 11364 119 19 38 chr3 5703403 5703546 -221821032 + Tigger1 DNA MER2_type 1 145 -2273 1090 113 60 0 chr3 5703546 5703714 -221820864 - L1PB3 LINE L1 -1 6153 5976 11364 119 19 38 chr3 5703714 5704308 -221820270 + Tigger1 DNA MER2_type 145 749 -1669 2136 115 30 7 chr3 5704308 5704579 -221819999 + AluSq SINE Alu 1 281 -32 960 122 23 0 chr3 5704579 5704751 -221819827 + GA-rich Low_complexity Low_complexity 3 178 0 2136 115 30 7 chr3 5704751 5704783 -221819795 + AluSq SINE Alu 281 311 -2 11364 119 19 38 chr3 5704783 5706016 -221818562 + Tigger1 DNA MER2_type 749 1934 -484 2186 152 20 93 chr3 5706016 5706509 -221818069 - LTR32 LTR ERVL 0 471 15 2955 140 10 6 chr3 5706509 5706995 -221817583 + Tigger1 DNA MER2_type 1930 2417 -1 434 274 42 53 chr3 5707095 5707285 -221817293 - MIR SINE MIR -36 226 39 315 452 25 0 chr3 5707478 5707635 -221816943 - L2 LINE L2 -12 3260 3100 * 621 292 31 5 chr3 5707633 5707825 -221816753 - MIR SINE MIR -1 261 65 354 304 9 9 chr3 5708028 5708143 -221816435 + MIR SINE MIR 137 251 -11 245 289 22 44 chr3 5708439 5708529 -221816049 + L3 LINE CR1 1488 1575 -2 475 305 72 6 chr3 5709810 5709977 -221814601 + MIR SINE MIR 37 214 -48 783 73 47 80 chr3 5710577 5710592 -221813986 + L1MA5A LINE L1 6153 6167 -130 1827 153 40 35 chr3 5710592 5710965 -221813613 + THE1C LTR MaLR 1 375 0 783 73 47 80 chr3 5710965 5711073 -221813505 + L1MA5A LINE L1 6167 6273 -24 455 105 53 0 chr3 5711073 5711099 -221813479 + MADE1 DNA Mariner 1 24 -56 2312 84 19 10 chr3 5711099 5711407 -221813171 - AluY SINE Alu 0 311 1 455 105 53 0 chr3 5711407 5711456 -221813122 + MADE1 DNA Mariner 24 80 0 783 73 47 80 chr3 5711456 5711481 -221813097 + L1MA5A LINE L1 6273 6297 0 1161 195 20 28 chr3 5712195 5712526 -221812052 - MLT2B3 LTR ERVL 0 554 231 1401 159 39 0 chr3 5712538 5712796 -221811782 - MLT2A2 LTR ERVL -185 268 1 698 296 102 19 chr3 5712890 5713204 -221811374 + MER102b DNA MER1_type 2 341 0 210 288 82 0 chr3 5713306 5713379 -221811199 + L2 LINE L2 3235 3313 0 238 281 67 11 chr3 5713387 5713476 -221811102 - L3 LINE CR1 -522 1055 962 409 309 65 12 chr3 5714704 5714895 -221809683 - MIR SINE MIR -43 219 18 304 272 25 0 chr3 5715005 5715086 -221809492 - MER81 DNA DNA -5 109 27 260 184 0 20 chr3 5715109 5715158 -221809420 - MER81 DNA DNA -66 48 1 2377 124 5 22 chr3 5715337 5715707 -221808871 + THE1B LTR MaLR 1 364 0 294 320 56 8 chr3 5715961 5716086 -221808492 - MIR SINE MIR -29 233 103 355 271 75 0 chr3 5717014 5717147 -221807431 + LTR67 LTR ERVL 403 545 -12 2246 103 3 10 chr3 5717193 5717505 -221807073 - AluSg SINE Alu 0 310 1 1632 167 39 33 chr3 5717591 5717927 -221806651 - MER7A DNA MER2_type -9 337 2 21 0 0 0 chr3 5718083 5718104 -221806474 + AT_rich Low_complexity Low_complexity 1 21 0 205 353 35 12 chr3 5718276 5718361 -221806217 - MIR SINE MIR 0 262 176 496 286 31 26 chr3 5718749 5718941 -221805637 - MIR SINE MIR 0 262 70 1131 179 37 34 chr3 5719155 5719423 -221805155 - L1MB8 LINE L1 -75 6103 5835 186 191 0 0 chr3 5719712 5719754 -221804824 + (TG)n Simple_repeat Simple_repeat 2 43 0 217 89 44 0 chr3 5722697 5722742 -221801836 + (TTA)n Simple_repeat Simple_repeat 2 48 0 186 133 0 0 chr3 5723055 5723085 -221801493 + (T)n Simple_repeat Simple_repeat 1 30 0 286 339 106 21 chr3 5727022 5727211 -221797367 - MIR SINE MIR -21 241 37 419 234 81 16 chr3 5727526 5727650 -221796928 - MIR SINE MIR -18 244 113 584 292 80 56 chr3 5728393 5728732 -221795846 - L1ME4a LINE L1 0 6121 5775 252 268 0 0 chr3 5731767 5731823 -221792755 + L2 LINE L2 3176 3231 -41 2203 137 44 34 chr3 5732025 5732248 -221792330 - MLT1B LTR MaLR 0 390 160 2427 93 3 0 chr3 5732248 5732558 -221792020 - AluSq SINE Alu -2 311 1 2203 137 44 34 chr3 5732558 5732720 -221791858 - MLT1B LTR MaLR -230 160 1 514 343 0 0 chr3 5732881 5733024 -221791554 - MIR3 SINE MIR -23 185 43 213 321 0 0 chr3 5733736 5733792 -221790786 - L2 LINE L2 -5 3308 3253 843 233 110 8 chr3 5734199 5734435 -221790143 - MIR SINE MIR 0 262 3 242 289 47 39 chr3 5734436 5734564 -221790014 - L2 LINE L2 -494 2820 2692 1793 166 7 7 chr3 5735137 5735433 -221789145 + AluJo SINE Alu 5 300 -12 415 279 144 19 chr3 5735742 5735950 -221788628 - L2 LINE L2 -12 3301 3068 324 278 107 47 chr3 5736721 5736890 -221787688 - MIR3 SINE MIR -7 201 23 4720 184 57 16 chr3 5737086 5738172 -221786406 - L1MC4 LINE L1 -5 8037 6907 1000 288 88 22 chr3 5738223 5738467 -221786111 - LTR16C LTR ERVL -22 469 192 2182 165 93 27 chr3 5738467 5738941 -221785637 + MLT1D LTR MaLR 1 505 0 1000 288 88 22 chr3 5738941 5739061 -221785517 - LTR16C LTR ERVL -299 192 81 2690 80 11 16 chr3 5740003 5740379 -221784199 - THE1C LTR MaLR 0 375 2 180 324 25 88 chr3 5740444 5740728 -221783850 + L2 LINE L2 2711 2976 -338 244 295 16 0 chr3 5740890 5740951 -221783627 + L2 LINE L2 3206 3267 -5 448 303 68 19 chr3 5741034 5741120 -221783458 + MIR3 SINE MIR 33 113 -95 20476 58 1 18 chr3 5741120 5744577 -221780001 + L1PA5 LINE L1 2698 6145 -9 448 303 68 19 chr3 5744577 5744652 -221779926 + MIR3 SINE MIR 113 202 -6 562 266 128 21 chr3 5745195 5745383 -221779195 + MIR SINE MIR 18 225 -37 240 381 49 69 chr3 5745397 5745846 -221778732 - L2 LINE L2 -8 3264 2825 189 133 0 0 chr3 5745876 5745906 -221778672 - L2 LINE L2 -4 3309 3280 234 293 73 0 chr3 5745913 5745995 -221778583 - MIR SINE MIR -95 167 80 3042 144 26 0 chr3 5746015 5746515 -221778063 - L1PA16 LINE L1 -2 6164 5652 1339 107 9 0 chr3 5746515 5746731 -221777847 + L1P4 LINE L1 5377 5594 -572 293 328 49 16 chr3 5747059 5747181 -221777397 - MIR SINE MIR -105 157 32 6410 256 85 48 chr3 5747402 5749821 -221774757 + L2 LINE L2 450 2958 -356 858 176 4 106 chr3 5749822 5750049 -221774529 + MER3 DNA MER1_type 6 209 0 979 262 19 52 chr3 5750058 5750382 -221774196 + L2 LINE L2 2966 3278 -35 262 274 16 0 chr3 5750575 5750637 -221773941 + L2 LINE L2 3136 3198 -74 979 157 0 0 chr3 5752404 5752557 -221772021 + FRAM SINE Alu 21 173 -3 377 224 115 51 chr3 5753100 5753256 -221771322 + MIR3 SINE MIR 40 205 -3 762 289 62 55 chr3 5753751 5754204 -221770374 - MLT1K LTR MaLR -64 524 69 834 286 44 8 chr3 5754378 5754630 -221769948 + MIR SINE MIR 2 262 0 289 341 12 0 chr3 5754633 5754718 -221769860 - MIR SINE MIR -93 115 30 630 297 39 0 chr3 5755884 5756066 -221768512 - MIR SINE MIR -48 214 26 2645 171 92 14 chr3 5756129 5756639 -221767939 - MER44D DNA MER2_type 0 605 1 270 383 87 0 chr3 5756713 5756896 -221767682 - MIR SINE MIR 0 262 64 1197 252 20 17 chr3 5756906 5757208 -221767370 + LTR16C LTR ERVL 189 491 0 22 0 0 0 chr3 5758078 5758100 -221766478 + AT_rich Low_complexity Low_complexity 1 22 0 2186 107 3 7 chr3 5758189 5758479 -221766099 + AluSc SINE Alu 1 289 -20 189 0 0 0 chr3 5758881 5758902 -221765676 + (T)n Simple_repeat Simple_repeat 1 21 0 543 285 21 57 chr3 5760026 5760061 -221764517 + MIR3 SINE MIR 19 54 -154 1221 186 91 96 chr3 5760061 5760459 -221764119 + MSTD LTR MaLR 1 396 0 543 285 21 57 chr3 5760459 5760616 -221763962 + MIR3 SINE MIR 54 204 -4 43 47 0 0 chr3 5760631 5760695 -221763883 + AT_rich Low_complexity Low_complexity 1 64 0 29384 111 11 57 chr3 5761293 5767749 -221756829 - L1PA7 LINE L1 0 6154 12 24 32 0 0 chr3 5768324 5768355 -221756223 + AT_rich Low_complexity Low_complexity 1 31 0 564 295 84 40 chr3 5768457 5768708 -221755870 + MIR SINE MIR 1 262 0 372 273 23 34 chr3 5768833 5769009 -221755569 - MER104 DNA Tc2 0 180 7 269 272 65 33 chr3 5769258 5769350 -221755228 - L3 LINE CR1 -7 1570 1476 402 275 261 24 chr3 5769941 5770152 -221754426 - MIR SINE MIR 0 262 2 29 0 0 0 chr3 5770618 5770647 -221753931 + AT_rich Low_complexity Low_complexity 1 29 0 11466 35 19 3 chr3 5770647 5772829 -221751749 - L1PA3 LINE L1 -3 6152 3948 15301 34 1 0 chr3 5772829 5774795 -221749783 + L1PA3 LINE L1 1965 3932 -2214 525 111 0 22 chr3 5774911 5775001 -221749577 + MER53 DNA DNA 102 189 0 1819 196 123 5 chr3 5775001 5775399 -221749179 + MLT1F1 LTR MaLR 123 567 0 2059 111 26 65 chr3 5775539 5775926 -221748652 + THE1C LTR MaLR 1 372 -3 21 71 0 0 chr3 5776009 5776051 -221748527 + AT_rich Low_complexity Low_complexity 1 42 0 232 298 57 79 chr3 5776082 5776252 -221748326 - MIR SINE MIR -56 206 32 2192 123 0 3 chr3 5776394 5776695 -221747883 + AluSg SINE Alu 1 300 -10 2191 148 0 0 chr3 5779176 5779486 -221745092 - AluSx SINE Alu -2 310 1 317 261 114 34 chr3 5780143 5780317 -221744261 - MIR3 SINE MIR -6 202 13 * 541 327 128 0 chr3 5780265 5780476 -221744102 + MIR SINE MIR 23 260 -2 333 238 60 24 chr3 5781126 5781210 -221743368 - MIR SINE MIR -157 105 19 321 26 0 0 chr3 5781389 5781427 -221743151 + (CA)n Simple_repeat Simple_repeat 1 38 0 2386 81 35 3 chr3 5782121 5782465 -221742113 + THE1A LTR MaLR 1 355 0 705 316 50 11 chr3 5783332 5783693 -221740885 + LTR16A LTR ERVL 1 375 -75 658 291 100 9 chr3 5783904 5784124 -221740454 + MIR SINE MIR 23 262 0 1226 83 52 5 chr3 5784275 5784468 -221740110 + MLT2A1 LTR ERVL 3 204 -240 5093 83 0 0 chr3 5784468 5785163 -221739415 - L1PA4 LINE L1 -5450 696 2 * 36236 38 4 4 chr3 5785156 5790629 -221733949 + L1PA4 LINE L1 685 6152 -3 1490 97 26 4 chr3 5790666 5790892 -221733686 + MLT2A1 LTR ERVL 214 444 0 428 257 60 49 chr3 5791430 5791642 -221732936 + MLT1L LTR MaLR 366 605 -8 302 302 7 64 chr3 5791742 5791868 -221732710 - MIR3 SINE MIR -41 167 45 288 185 37 0 chr3 5791871 5791925 -221732653 - L2 LINE L2 0 3272 3217 269 313 86 31 chr3 5792783 5792911 -221731667 + MER5A DNA MER1_type 55 189 0 * 279 215 51 51 chr3 5792911 5792965 -221731613 - MIR3 SINE MIR -47 161 108 189 345 18 0 chr3 5793159 5793214 -221731364 - L2 LINE L2 -17 3296 3241 606 297 109 17 chr3 5795979 5796218 -221728360 + MIR SINE MIR 2 262 0 195 328 50 34 chr3 5796301 5796420 -221728158 - MIR SINE MIR -95 167 47 191 203 68 0 chr3 5797886 5797945 -221726633 + L2 LINE L2 1644 1706 -1608 688 279 66 44 chr3 5798059 5798378 -221726200 + MLT1I LTR MaLR 63 388 -21 1309 290 88 34 chr3 5798420 5799013 -221725565 + L2 LINE L2 1801 2425 -889 1341 203 25 0 chr3 5799027 5799268 -221725310 + MLT1C LTR MaLR 221 467 0 379 266 64 0 chr3 5801828 5801922 -221722656 - MIR SINE MIR -116 146 47 472 283 20 26 chr3 5802221 5802373 -221722205 - MIR3 SINE MIR -24 184 34 480 271 33 20 chr3 5803354 5803505 -221721073 - MIR3 SINE MIR -16 192 40 598 343 41 0 chr3 5803511 5803730 -221720848 - LTR16C LTR ERVL 0 491 264 2458 173 70 10 chr3 5804073 5804559 -221720019 - MLT2B2 LTR ERVL 0 515 1 2749 169 26 17 chr3 5804559 5805225 -221719353 - ERVL LTR ERVL 0 5654 5007 585 163 0 0 chr3 5805225 5805317 -221719261 - MLT2B1 LTR ERVL -428 92 1 637 284 80 49 chr3 5805450 5805774 -221718804 - MLT1K LTR MaLR 0 588 255 686 258 62 0 chr3 5805830 5806008 -221718570 - MER5A DNA MER1_type 0 189 1 457 141 16 132 chr3 5806032 5806153 -221718425 - MLT1K LTR MaLR -448 107 1 482 294 47 30 chr3 5806201 5806562 -221718016 + L1MEc LINE L1 1294 1660 -4736 3038 279 38 27 chr3 5806567 5807456 -221717122 + L1MEc LINE L1 3032 3946 -2269 1637 188 0 24 chr3 5807456 5807744 -221716834 + AluJo SINE Alu 11 291 -21 3038 279 38 27 chr3 5807744 5808350 -221716228 + L1MEc LINE L1 3946 4544 -1671 5245 227 42 16 chr3 5808352 5810199 -221714379 + L1MCa LINE L1 575 2662 -3945 1356 235 40 0 chr3 5810210 5810605 -221713973 + L1MCa LINE L1 3308 3718 -2708 1745 56 8 0 chr3 5810611 5810845 -221713733 + L1P LINE L1 4872 5107 -1039 213 136 45 0 chr3 5810845 5810911 -221713667 + (TA)n Simple_repeat Simple_repeat 2 70 0 6812 62 5 0 chr3 5810913 5812404 -221712174 - L1PA6 LINE L1 -13 6141 4643 5330 39 5 3 chr3 5812404 5813050 -221711528 - L1PA5 LINE L1 -2 6152 5506 31631 104 8 10 chr3 5813052 5817713 -221706865 - L1PA6 LINE L1 -1494 4652 1 320 248 0 0 chr3 5817752 5817840 -221706738 + L1PB4 LINE L1 6072 6149 -7 14183 159 29 8 chr3 5817855 5819913 -221704665 - L1MA1 LINE L1 0 7721 5557 1838 183 0 3 chr3 5819913 5820214 -221704364 - AluSx SINE Alu -12 300 1 14183 159 29 8 chr3 5820214 5821960 -221702618 - L1MA1 LINE L1 -2164 5557 3849 1859 209 57 90 chr3 5821961 5822526 -221702052 + MLT2B3 LTR ERVL 1 546 -8 10552 130 24 7 chr3 5822530 5824466 -221700112 - L1MA1 LINE L1 -3713 3852 1881 1761 163 14 20 chr3 5824467 5824811 -221699767 + L1MC1 LINE L1 5272 5613 -720 2296 169 11 13 chr3 5824814 5825263 -221699315 + L1MA7 LINE L1 5842 6289 -2 3822 153 28 36 chr3 5825280 5825703 -221698875 + L1MC1 LINE L1 5595 6011 -322 2046 145 0 7 chr3 5825703 5826007 -221698571 - AluSx SINE Alu -10 302 1 3822 153 28 36 chr3 5826007 5826328 -221698250 + L1MC1 LINE L1 6011 6333 0 634 241 42 87 chr3 5826333 5826735 -221697843 + L1ME3A LINE L1 4475 4858 -1288 244 300 85 0 chr3 5826742 5826872 -221697706 + L1ME3A LINE L1 5006 5146 -1000 4443 133 27 13 chr3 5826873 5827622 -221696956 + Tigger2 DNA MER2_type 1 759 -1959 1117 167 73 29 chr3 5827677 5827862 -221696716 + Tigger2 DNA MER2_type 2453 2653 -55 2262 116 0 0 chr3 5827862 5828164 -221696414 - AluSq SINE Alu -11 302 1 1117 167 73 29 chr3 5828164 5828223 -221696355 + Tigger2 DNA MER2_type 2653 2708 0 696 257 32 24 chr3 5828225 5828542 -221696036 + L1ME3A LINE L1 5148 5468 -694 313 236 67 0 chr3 5828550 5828639 -221695939 - L1MA9 LINE L1 -38 6274 6180 2074 123 0 10 chr3 5828639 5828931 -221695647 + AluSx SINE Alu 1 289 -23 1044 123 21 48 chr3 5828946 5829153 -221695425 + AluSq SINE Alu 132 313 0 2722 183 57 37 chr3 5829180 5829796 -221694782 - L1MA9 LINE L1 -181 6131 5504 1870 242 83 44 chr3 5829784 5830445 -221694133 + L1ME3A LINE L1 5448 6134 -36 * 23 54 0 0 chr3 5831034 5831071 -221693507 + AT_rich Low_complexity Low_complexity 1 37 0 188 208 75 0 chr3 5831106 5831159 -221693419 - MIR SINE MIR -107 155 99 328 277 149 0 chr3 5831161 5831255 -221693323 + MIR3 SINE MIR 89 196 -12 236 216 91 80 chr3 5832210 5832298 -221692280 - MIR SINE MIR -68 140 52 234 219 0 0 chr3 5832472 5832536 -221692042 + (TA)n Simple_repeat Simple_repeat 2 65 0 931 292 67 49 chr3 5833558 5834068 -221690510 - MLT1K LTR MaLR -60 528 10 26 74 0 0 chr3 5834345 5834399 -221690179 + AT_rich Low_complexity Low_complexity 1 54 0 30 0 0 0 chr3 5834727 5834757 -221689821 + AT_rich Low_complexity Low_complexity 1 30 0 2286 107 0 10 chr3 5834943 5835252 -221689326 - AluSx SINE Alu -6 306 1 194 283 110 55 chr3 5836852 5836997 -221687581 + MIR3 SINE MIR 44 196 -12 332 323 26 42 chr3 5837150 5837342 -221687236 + MIR SINE MIR 1 189 -73 2235 120 17 6 chr3 5837561 5837918 -221686660 + MER46B DNA MER2_type 1 236 0 207 306 10 31 chr3 5838642 5838740 -221685838 - MIR SINE MIR 0 262 167 42718 32 21 2 chr3 5838764 5844798 -221679780 + L1HS LINE L1 3 6155 0 266 268 85 12 chr3 5844803 5844885 -221679693 - MIR SINE MIR -133 129 42 936 300 129 12 chr3 5844955 5845445 -221679133 + MLT1H1 LTR MaLR 1 547 -8 258 200 0 33 chr3 5845673 5845733 -221678845 + (TTTA)n Simple_repeat Simple_repeat 3 60 0 545 312 41 45 chr3 5846553 5846822 -221677756 + MLT1K LTR MaLR 317 584 -4 2399 43 13 0 chr3 5846902 5847201 -221677377 + L1PA3 LINE L1 5849 6179 0 232 36 0 0 chr3 5847201 5847229 -221677349 + (TAAAAA)n Simple_repeat Simple_repeat 5 180 0 2296 89 0 40 chr3 5847372 5847697 -221676881 - AluSx SINE Alu 0 312 1 342 0 0 0 chr3 5848620 5848658 -221675920 + (A)n Simple_repeat Simple_repeat 1 38 0 1170 266 110 39 chr3 5848977 5849639 -221674939 - L2 LINE L2 -6 3307 2608 998 214 57 21 chr3 5849644 5849975 -221674603 - L1MEc LINE L1 -4330 2066 1724 6721 26 0 0 chr3 5849978 5850790 -221673788 - L1PA3 LINE L1 0 6155 5344 2962 299 56 25 chr3 5850792 5852387 -221672191 - L1MEc LINE L1 -4675 1721 77 335 227 57 102 chr3 5852390 5852566 -221672012 - MIR3 SINE MIR -22 186 19 384 157 0 14 chr3 5852591 5852661 -221671917 - MLT1C LTR MaLR -1 466 398 1928 150 0 0 chr3 5852667 5852941 -221671637 + AluSx SINE Alu 1 274 -38 807 66 0 0 chr3 5852941 5853047 -221671531 + (GGAA)n Simple_repeat Simple_repeat 2 107 0 901 151 0 0 chr3 5853058 5853184 -221671394 + AluSg/x SINE Alu 148 273 -39 234 105 0 0 chr3 5853190 5853228 -221671350 + (GA)n Simple_repeat Simple_repeat 1 38 0 1294 228 27 49 chr3 5853232 5853640 -221670938 - MLT1C LTR MaLR -62 405 7 346 268 167 24 chr3 5855012 5855180 -221669398 - MIR3 SINE MIR -7 201 10 1214 295 164 15 chr3 5855203 5856043 -221668535 + L2 LINE L2 2116 3082 -231 2265 110 7 0 chr3 5856241 5856541 -221668037 - AluSq SINE Alu -11 302 1 1055 173 0 0 chr3 5856574 5856736 -221667842 - FAM SINE Alu -12 163 2 336 322 77 11 chr3 5860033 5860216 -221664362 + L2 LINE L2 3118 3312 -1 443 198 16 24 chr3 5863304 5863430 -221661148 + L1ME4a LINE L1 5993 6117 -4 21 0 0 0 chr3 5863976 5863997 -221660581 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr3 5864253 5864274 -221660304 + AT_rich Low_complexity Low_complexity 1 21 0 354 370 79 46 chr3 5864939 5865242 -221659336 - L2 LINE L2 -18 3254 2942 225 273 116 88 chr3 5865401 5865617 -221658961 + L2 LINE L2 2925 3146 -126 1084 215 66 78 chr3 5866624 5866645 -221657933 - MLT1B LTR MaLR 0 390 370 1942 185 25 3 chr3 5866645 5867002 -221657576 - MLT1A1 LTR MaLR 0 365 1 1084 215 66 78 chr3 5867002 5867375 -221657203 - MLT1B LTR MaLR -20 370 1 623 87 19 0 chr3 5867383 5867486 -221657092 + (TGGA)n Simple_repeat Simple_repeat 3 107 0 554 149 0 9 chr3 5867486 5867593 -221656985 + (GGGA)n Simple_repeat Simple_repeat 3 108 0 208 260 0 0 chr3 5867762 5867812 -221656766 - L2 LINE L2 -8 3305 3256 465 269 51 32 chr3 5867893 5868049 -221656529 - MER5B DNA MER1_type -1 177 19 1744 238 97 33 chr3 5869009 5869648 -221654930 + MER20B DNA MER1_type 96 775 -8 214 208 0 38 chr3 5869959 5870012 -221654566 - MIR SINE MIR -51 211 161 10018 86 13 1 chr3 5870034 5872200 -221652378 - L1PA7 LINE L1 -2 6152 3969 8740 98 30 9 chr3 5872200 5873588 -221650990 + L1PA7 LINE L1 2546 3963 -2183 212 348 102 0 chr3 5873592 5873710 -221650868 - MIR SINE MIR -108 154 25 499 257 22 15 chr3 5874386 5874522 -221650056 + MER117 DNA MER1_type 8 144 -53 275 297 0 0 chr3 5874607 5874671 -221649907 - MIR SINE MIR -64 144 81 2805 19 0 0 chr3 5874672 5874985 -221649593 + AluYb8 SINE Alu 1 313 -5 3808 90 8 4 chr3 5875016 5875548 -221649030 + L1PA14 LINE L1 5627 6160 -1 243 290 40 10 chr3 5875637 5875737 -221648841 - MIR SINE MIR -23 239 137 291 65 87 0 chr3 5877002 5877048 -221647530 + MADE1 DNA Mariner 4 53 -27 372 295 132 44 chr3 5877121 5877262 -221647316 - MIR SINE MIR -1 261 91 2387 106 3 0 chr3 5877262 5877573 -221647005 + AluSp SINE Alu 1 312 -1 372 295 132 44 chr3 5877573 5877658 -221646920 - MIR SINE MIR -171 91 15 192 77 0 0 chr3 5878022 5878048 -221646530 + (GAAAA)n Simple_repeat Simple_repeat 3 28 0 225 302 58 12 chr3 5878663 5878749 -221645829 + MIR SINE MIR 25 114 -148 364 325 98 0 chr3 5879009 5879172 -221645406 - MIR SINE MIR -1 261 83 415 126 11 23 chr3 5879599 5879686 -221644892 + (GGGA)n Simple_repeat Simple_repeat 1 86 0 1038 265 63 66 chr3 5879860 5880302 -221644276 + L2 LINE L2 2873 3313 0 215 224 17 17 chr3 5880307 5880365 -221644213 - MIR SINE MIR -123 139 82 283 306 231 27 chr3 5880391 5880685 -221643893 + L2 LINE L2 2910 3263 -50 217 368 0 0 chr3 5880710 5880786 -221643792 + MIR SINE MIR 185 260 -2 934 158 20 0 chr3 5881715 5881861 -221642717 - FAM SINE Alu -14 171 23 294 264 0 11 chr3 5882746 5882837 -221641741 + (TATATG)n Simple_repeat Simple_repeat 4 93 0 486 0 0 0 chr3 5883155 5883209 -221641369 + (CA)n Simple_repeat Simple_repeat 2 55 0 228 35 0 0 chr3 5883525 5883554 -221641024 + (TTTTTG)n Simple_repeat Simple_repeat 2 30 0 1270 166 107 112 chr3 5883568 5883960 -221640618 + MLT1B LTR MaLR 1 390 0 209 290 108 21 chr3 5884564 5884657 -221639921 + L3 LINE CR1 1383 1483 -94 * 234 318 91 45 chr3 5884650 5884782 -221639796 - L2 LINE L2 0 3313 3176 2219 108 0 3 chr3 5885168 5885464 -221639114 + AluSc SINE Alu 2 296 -13 322 304 77 0 chr3 5886231 5886399 -221638179 + L1ME4a LINE L1 5636 5816 -305 414 275 133 38 chr3 5886486 5886726 -221637852 + L1ME4a LINE L1 5856 6118 -3 287 309 11 11 chr3 5886901 5886995 -221637583 + MIR3 SINE MIR 109 202 -6 315 281 22 50 chr3 5887169 5887308 -221637270 - MIR3 SINE MIR -20 188 54 5166 146 9 25 chr3 5887581 5888683 -221635895 + L1PA16 LINE L1 4686 5762 -404 2216 129 0 37 chr3 5888683 5889032 -221635546 - MER1B DNA MER1_type 0 337 2 5166 146 9 25 chr3 5889032 5889386 -221635192 + L1PA16 LINE L1 5762 6120 -46 7133 128 52 2 chr3 5889399 5890618 -221633960 - HSMAR2 DNA Mariner -22 1280 2 420 307 14 43 chr3 5890769 5890909 -221633669 + MIR3 SINE MIR 4 139 -69 331 328 0 73 chr3 5891045 5891222 -221633356 - L2 LINE L2 -227 3045 2882 215 200 122 78 chr3 5892158 5892248 -221632330 + L3 LINE CR1 295 388 -1189 3494 42 0 5 chr3 5892737 5893166 -221631412 - L1PA5 LINE L1 0 6154 5728 3621 35 29 3 chr3 5893168 5893804 -221630774 + L1PA5 LINE L1 5087 5735 -419 1556 201 223 2 chr3 5893855 5894267 -221630311 - MLT1F LTR MaLR 0 542 40 193 194 0 0 chr3 5894307 5894343 -221630235 - L2 LINE L2 -9 3304 3269 274 336 141 32 chr3 5894799 5895346 -221629232 - L2 LINE L2 -7 3306 2703 2162 113 0 7 chr3 5895899 5896201 -221628377 + AluSx SINE Alu 1 300 -12 631 293 96 29 chr3 5896639 5896984 -221627594 - LTR16C LTR ERVL -34 457 90 22 35 0 0 chr3 5897125 5897154 -221627424 + AT_rich Low_complexity Low_complexity 1 29 0 585 259 113 29 chr3 5897423 5897662 -221626916 + MIR SINE MIR 1 259 -3 444 314 182 0 chr3 5897869 5898089 -221626489 + MIR SINE MIR 3 262 0 364 222 99 0 chr3 5898096 5898177 -221626401 - L2 LINE L2 -4 3268 3180 204 216 0 0 chr3 5898311 5898362 -221626216 + GA-rich Low_complexity Low_complexity 4 54 0 382 327 80 12 chr3 5898913 5899075 -221625503 - MIR SINE MIR -56 206 34 781 165 0 24 chr3 5899233 5899351 -221625227 + FLAM_A SINE Alu 1 117 -185 294 73 0 0 chr3 5899351 5899392 -221625186 + (CA)n Simple_repeat Simple_repeat 2 42 0 964 222 46 62 chr3 5900252 5900333 -221624245 + MER33 DNA MER1_type 1 82 -2503 2059 173 42 58 chr3 5900333 5900783 -221623795 + LTR47B LTR ERVL 1 443 0 964 222 46 62 chr3 5900783 5901007 -221623571 + MER33 DNA MER1_type 82 301 -23 229 330 43 0 chr3 5901960 5902075 -221622503 + MIR3 SINE MIR 37 156 -52 588 274 18 50 chr3 5902629 5902848 -221621730 - MIR SINE MIR -20 242 31 215 363 127 0 chr3 5903888 5904045 -221620533 - MIR SINE MIR -2 260 84 228 314 108 29 chr3 5904130 5904232 -221620346 + MIR SINE MIR 34 143 -65 314 262 172 21 chr3 5904273 5904418 -221620160 + MIR SINE MIR 36 202 -60 424 56 0 0 chr3 5904423 5904477 -221620101 - MLT2A1 LTR ERVL 0 444 391 321 169 0 0 chr3 5904478 5904537 -221620041 + (TA)n Simple_repeat Simple_repeat 1 59 0 235 292 11 0 chr3 5904537 5904626 -221619952 + L1MC4 LINE L1 6614 6703 -1339 208 151 57 0 chr3 5904627 5904680 -221619898 + (TA)n Simple_repeat Simple_repeat 2 57 0 2256 145 5 30 chr3 5904693 5905066 -221619512 - THE1B LTR MaLR 0 364 1 233 238 71 36 chr3 5905350 5905434 -221619144 + MIR SINE MIR 96 182 -80 518 276 13 26 chr3 5905834 5905990 -221618588 + MIR SINE MIR 2 155 -107 2274 229 92 24 chr3 5906023 5906600 -221617978 + MLT1E2 LTR MaLR 1 616 -10 278 235 82 0 chr3 5906829 5906914 -221617664 - MIR SINE MIR -65 197 106 224 307 183 7 chr3 5907502 5907655 -221616923 + MER5A DNA MER1_type 9 188 -1 1015 281 139 22 chr3 5908210 5908662 -221615916 - MLT1D LTR MaLR 0 505 1 224 194 117 48 chr3 5908773 5908876 -221615702 + MIR SINE MIR 139 248 -14 216 0 0 0 chr3 5909889 5909913 -221614665 + (A)n Simple_repeat Simple_repeat 1 24 0 6069 200 45 9 chr3 5910529 5911836 -221612742 - L1PA12 LINE L1 -4827 2754 1688 4065 2 0 0 chr3 5912261 5912706 -221611872 - L1HS LINE L1 0 6155 5711 1311 106 4 65 chr3 5912749 5912778 -221611800 + L1MA9 LINE L1 6082 6111 -201 1552 194 31 17 chr3 5912778 5913067 -221611511 + AluJo SINE Alu 1 293 -19 1311 106 4 65 chr3 5913067 5913282 -221611296 + L1MA9 LINE L1 6111 6311 -1 645 291 131 43 chr3 5913477 5913852 -221610726 + L3 LINE CR1 623 1030 -547 227 333 0 0 chr3 5913907 5913964 -221610614 + L3 LINE CR1 1409 1465 -112 2223 126 3 0 chr3 5914101 5914411 -221610167 - AluSx SINE Alu -1 311 1 259 305 21 57 chr3 5915114 5915255 -221609323 + MIR SINE MIR 81 216 -46 291 284 35 71 chr3 5915290 5915321 -221609257 - MIR SINE MIR -58 204 173 2612 133 22 38 chr3 5915321 5915359 -221609219 + MER65A LTR ERV1 2 39 -406 204 97 0 0 chr3 5915359 5915390 -221609188 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 2612 133 22 38 chr3 5915390 5915802 -221608776 + MER65A LTR ERV1 39 445 0 291 284 35 71 chr3 5915802 5915911 -221608667 - MIR SINE MIR -89 173 69 551 252 80 101 chr3 5916018 5916442 -221608136 + LTR33 LTR ERVL 93 507 -14 323 291 45 27 chr3 5918014 5918060 -221606518 + MIR SINE MIR 95 139 -123 1382 198 77 57 chr3 5918060 5918410 -221606168 + MLT2C1 LTR ERVL 1 361 -36 411 56 0 0 chr3 5918410 5918464 -221606114 + (TCCA)n Simple_repeat Simple_repeat 3 56 0 1382 198 77 57 chr3 5918464 5918502 -221606076 + MLT2C1 LTR ERVL 361 397 0 323 291 45 27 chr3 5918502 5918565 -221606013 + MIR SINE MIR 139 206 -56 809 224 0 12 chr3 5918943 5919108 -221605470 + FRAM SINE Alu 1 162 -14 562 253 93 0 chr3 5919356 5919506 -221605072 + MLT1J2 LTR MaLR 18 181 -269 962 293 96 48 chr3 5919518 5920386 -221604192 + L2 LINE L2 2357 3253 -60 601 298 46 21 chr3 5920900 5921138 -221603440 - MIR SINE MIR -16 246 3 198 317 17 17 chr3 5921198 5921258 -221603320 + L2 LINE L2 3002 3061 -211 279 326 12 12 chr3 5921435 5921521 -221603057 - MIR SINE MIR -149 113 28 216 363 124 0 chr3 5921839 5921952 -221602626 + L2 LINE L2 3183 3309 -4 868 293 162 25 chr3 5922115 5922474 -221602104 - MLT1I LTR MaLR 0 409 2 4602 165 47 6 chr3 5922509 5923299 -221601279 - LTR1B LTR ERV1 0 826 5 288 195 158 0 chr3 5923409 5923491 -221601087 + MIR SINE MIR 91 185 -77 2032 141 0 22 chr3 5923499 5923818 -221600760 + AluJb SINE Alu 1 312 0 197 239 22 0 chr3 5923865 5923911 -221600667 + L2 LINE L2 3210 3256 -16 1769 190 22 28 chr3 5925052 5925419 -221599159 - MLT1A1 LTR MaLR 0 467 1 442 141 256 0 chr3 5925766 5925844 -221598734 - Tigger1 DNA MER2_type 0 2418 2321 * 4912 135 7 0 chr3 5925842 5926569 -221598009 - Tigger1 DNA MER2_type -1659 759 28 526 287 23 6 chr3 5927823 5927997 -221596581 - MIR SINE MIR -10 252 76 229 344 10 0 chr3 5928318 5928414 -221596164 - MIR SINE MIR 0 262 166 2131 162 43 94 chr3 5928432 5928511 -221596067 - MLT1D LTR MaLR 0 505 424 1673 191 47 7 chr3 5928511 5928809 -221595769 - AluJo SINE Alu -2 310 1 2131 162 43 94 chr3 5928809 5929259 -221595319 - MLT1D LTR MaLR -81 424 3 27 29 0 0 chr3 5929398 5929432 -221595146 + AT_rich Low_complexity Low_complexity 1 34 0 1391 211 68 4 chr3 5929432 5929712 -221594866 + AluJo SINE Alu 1 298 -14 353 269 17 25 chr3 5929712 5929779 -221594799 + L1ME4a LINE L1 6001 6068 -53 2419 78 0 16 chr3 5929779 5930086 -221594492 - AluY SINE Alu -9 302 1 353 269 17 25 chr3 5930086 5930137 -221594441 + L1ME4a LINE L1 6068 6118 -3 356 325 33 25 chr3 5930520 5930681 -221593897 + MIR SINE MIR 19 189 -27 217 161 195 81 chr3 5930858 5930945 -221593633 - MIR SINE MIR -146 116 20 231 250 0 50 chr3 5930998 5931058 -221593520 - MIR SINE MIR -133 75 19 * 834 267 49 20 chr3 5931029 5931276 -221593302 - MIR SINE MIR -7 255 2 343 318 91 86 chr3 5932625 5933222 -221591356 - L2 LINE L2 -2 3270 2652 537 226 80 15 chr3 5933342 5933479 -221591099 + MIR SINE MIR 9 154 -108 1206 236 35 39 chr3 5933486 5933796 -221590782 - MER46C DNA MER2_type -20 318 10 361 177 63 0 chr3 5933805 5933884 -221590694 + MIR SINE MIR 153 236 -26 263 235 59 0 chr3 5933948 5934016 -221590562 + MIR3 SINE MIR 126 197 -11 1972 158 119 0 chr3 5934099 5934207 -221590371 - MER57A LTR ERV1 0 403 309 3594 131 2 2 chr3 5934207 5934704 -221589874 + LOR1a LTR ERV1 1 497 0 1972 158 119 0 chr3 5934704 5934955 -221589623 - MER57A LTR ERV1 -94 309 1 337 255 0 103 chr3 5935304 5935449 -221589129 + MIR SINE MIR 77 206 -56 3708 113 10 8 chr3 5935493 5935997 -221588581 - MER84 LTR ERV1 0 507 3 3489 138 123 7 chr3 5936139 5936740 -221587838 + LTR51 LTR ERV1 1 671 0 186 239 0 22 chr3 5936763 5936809 -221587769 - MIR SINE MIR -36 226 182 187 233 0 0 chr3 5937027 5937070 -221587508 - MIR SINE MIR -102 160 118 4221 139 16 3 chr3 5937085 5937712 -221586866 + MER41B LTR ERV1 1 635 0 266 119 0 0 chr3 5937721 5937763 -221586815 + AluY SINE Alu 187 228 -73 228 211 135 0 chr3 5937768 5937820 -221586758 - MIR SINE MIR -199 63 5 325 291 48 0 chr3 5938697 5938800 -221585778 - MIR SINE MIR 0 262 155 784 264 40 54 chr3 5938902 5939178 -221585400 - LTR33 LTR ERVL -249 272 1 2162 167 67 42 chr3 5939427 5939877 -221584701 + LOR1b LTR ERV1 1 461 0 758 319 63 21 chr3 5940233 5940612 -221583966 - ERVL LTR ERVL -898 4866 4472 366 294 103 7 chr3 5940961 5941097 -221583481 - MIR SINE MIR -108 154 6 1445 148 40 37 chr3 5941372 5941697 -221582881 - MER33 DNA MER1_type -5 319 1 180 0 0 0 chr3 5941797 5941817 -221582761 + (GAA)n Simple_repeat Simple_repeat 2 21 0 222 296 133 20 chr3 5941919 5942017 -221582561 - MIR SINE MIR -134 128 20 183 80 0 0 chr3 5942024 5942049 -221582529 + (TAA)n Simple_repeat Simple_repeat 2 26 0 3433 178 54 76 chr3 5942349 5942677 -221581901 + MER45B DNA AcHobo 2 336 -704 5732 80 27 1 chr3 5942677 5943424 -221581154 + MER4E LTR ERV1 1 766 0 3433 178 54 76 chr3 5943424 5943669 -221580909 + MER45B DNA AcHobo 336 554 -486 2220 109 13 0 chr3 5943669 5943971 -221580607 - AluY SINE Alu -5 306 1 3433 178 54 76 chr3 5943971 5944210 -221580368 + MER45B DNA AcHobo 554 797 -243 34921 93 7 34 chr3 5944211 5949758 -221574820 + L1PA6 LINE L1 4 5338 -816 2426 62 0 16 chr3 5949758 5950063 -221574515 + AluY SINE Alu 1 300 -11 34921 93 7 34 chr3 5950063 5950851 -221573727 + L1PA6 LINE L1 5338 6146 -8 1305 141 32 8 chr3 5950851 5951100 -221573478 + MER45B DNA AcHobo 786 1040 0 340 289 0 10 chr3 5951115 5951212 -221573366 - MER117 DNA MER1_type -34 163 68 768 230 57 97 chr3 5951567 5951651 -221572927 - MIR SINE MIR -7 255 169 674 140 0 113 chr3 5951651 5951801 -221572777 + FLAM_C SINE Alu 1 133 0 768 230 57 97 chr3 5951801 5951964 -221572614 - MIR SINE MIR -93 169 18 245 195 0 0 chr3 5952307 5952348 -221572230 - L3 LINE CR1 -10 1567 1527 343 253 142 37 chr3 5952349 5952511 -221572067 + MER117 DNA MER1_type 1 179 -18 568 343 55 17 chr3 5952518 5952754 -221571824 + MIR SINE MIR 2 246 -16 255 286 39 26 chr3 5952852 5952929 -221571649 - MIR3 SINE MIR -48 160 83 387 255 33 72 chr3 5952951 5953104 -221571474 + MIR3 SINE MIR 35 181 -27 303 276 0 13 chr3 5953795 5953871 -221570707 + tRNA-Thr-ACA tRNA tRNA 1 75 -1 752 261 71 14 chr3 5953888 5954099 -221570479 + MIR SINE MIR 3 225 -37 201 250 44 59 chr3 5954145 5954213 -221570365 + L2 LINE L2 1366 1432 -1882 * 370 253 0 141 chr3 5954169 5954339 -221570239 - MIR3 SINE MIR -60 148 3 206 319 160 25 chr3 5954370 5954489 -221570089 + L2 LINE L2 3171 3305 -8 488 294 86 12 chr3 5954575 5954738 -221569840 + MIR SINE MIR 1 175 -87 515 214 26 0 chr3 5954759 5954876 -221569702 + MLT2C1 LTR ERVL 1 120 -277 569 168 81 46 chr3 5955047 5955220 -221569358 + L1MC4 LINE L1 7858 8036 -6 1815 155 3 21 chr3 5955228 5955518 -221569060 + AluJb SINE Alu 3 287 -25 43 47 0 0 chr3 5955523 5955587 -221568991 + AT_rich Low_complexity Low_complexity 1 64 0 22 35 0 0 chr3 5955681 5955710 -221568868 + AT_rich Low_complexity Low_complexity 1 29 0 186 311 90 25 chr3 5956700 5956822 -221567756 - L2 LINE L2 -15 3298 3169 345 234 62 23 chr3 5956917 5957045 -221567533 + HAL1b LINE L1 1216 1348 0 413 193 48 0 chr3 5959377 5959460 -221565118 + MIR3 SINE MIR 82 168 -40 315 264 101 39 chr3 5959487 5959629 -221564949 + MIR SINE MIR 30 145 -63 2208 129 33 30 chr3 5959695 5960058 -221564520 + THE1B LTR MaLR 1 364 0 228 240 72 40 chr3 5960218 5960317 -221564261 + MIR SINE MIR 34 145 -73 399 282 215 19 chr3 5960328 5960537 -221564041 - MIR SINE MIR -1 261 12 228 93 233 0 chr3 5960539 5960582 -221563996 - Charlie1 DNA MER1_type 0 2761 2709 * 453 160 19 19 chr3 5960574 5960680 -221563898 - Charlie1 DNA MER1_type -208 2553 2448 548 279 37 81 chr3 5961456 5961753 -221562825 + L2 LINE L2 2994 3277 -36 226 143 41 20 chr3 5961929 5961978 -221562600 + (TGAA)n Simple_repeat Simple_repeat 1 50 0 502 231 26 8 chr3 5963061 5963178 -221561400 + L2 LINE L2 3154 3272 0 4500 168 37 30 chr3 5963209 5963899 -221560679 + MER6 DNA MER2_type 1 700 -165 1455 119 92 12 chr3 5963899 5964150 -221560428 + AluSg SINE Alu 40 310 0 4500 168 37 30 chr3 5964150 5964318 -221560260 + MER6 DNA MER2_type 700 865 0 247 312 27 54 chr3 5965305 5965491 -221559087 + MIR3 SINE MIR 16 196 -12 612 322 45 25 chr3 5966059 5966304 -221558274 + MIR SINE MIR 13 262 0 271 377 29 58 chr3 5967295 5967571 -221557007 - L2 LINE L2 0 3272 3005 346 262 98 8 chr3 5967592 5967714 -221556864 - MER94 DNA DNA -1 133 1 473 305 145 15 chr3 5969779 5970041 -221554537 - MER102b DNA MER1_type -3 338 43 2338 90 0 7 chr3 5970310 5970620 -221553958 + AluSx SINE Alu 1 308 -4 7082 159 33 43 chr3 5972302 5974749 -221549829 + L1MA6 LINE L1 3791 6214 -86 2215 119 43 27 chr3 5974849 5975218 -221549360 - THE1C LTR MaLR 0 375 1 225 344 47 0 chr3 5975712 5975776 -221548802 + L2 LINE L2 3114 3180 -92 186 137 68 14 chr3 5975855 5975928 -221548650 + GA-rich Low_complexity Low_complexity 2 78 0 2309 112 0 7 chr3 5975960 5976263 -221548315 - AluSx SINE Alu -11 301 1 371 300 106 11 chr3 5976697 5976877 -221547701 - MIR SINE MIR 0 262 66 460 250 75 42 chr3 5977073 5977097 -221547481 + LTR33 LTR ERVL 3 25 -496 2001 142 44 33 chr3 5977097 5977457 -221547121 + THE1B LTR MaLR 1 364 0 460 250 75 42 chr3 5977457 5977644 -221546934 + LTR33 LTR ERVL 25 221 -300 270 56 0 0 chr3 5977707 5977743 -221546835 + (TC)n Simple_repeat Simple_repeat 1 36 0 2725 141 16 22 chr3 5977887 5978397 -221546181 + L1MA7 LINE L1 5613 6119 -172 316 317 178 26 chr3 5978984 5979214 -221545364 - L1MC4a LINE L1 -1928 5880 5616 10570 44 3 0 chr3 5980650 5982728 -221541850 + L1PA6 LINE L1 4066 6150 -4 1279 143 33 8 chr3 5982728 5982973 -221541605 + MER45B DNA AcHobo 790 1040 0 348 289 0 10 chr3 5982988 5983085 -221541493 - MER117 DNA MER1_type -34 163 68 334 390 45 35 chr3 5983900 5984303 -221540275 - L2 LINE L2 -585 2729 2323 742 234 6 12 chr3 5984374 5984541 -221540037 - MIR SINE MIR -23 239 74 10042 45 6 10 chr3 5984545 5985895 -221538683 - L1P LINE L1 -758 5388 4044 307 358 80 12 chr3 5986241 5986403 -221538175 - MIR SINE MIR -56 206 34 734 165 0 24 chr3 5986561 5986679 -221537899 + FLAM_A SINE Alu 1 117 -185 294 73 0 0 chr3 5986679 5986720 -221537858 + (CA)n Simple_repeat Simple_repeat 2 42 0 550 246 71 28 chr3 5987580 5987661 -221536917 + MER33 DNA MER1_type 1 77 -2508 1868 189 38 53 chr3 5987661 5988111 -221536467 + LTR47B LTR ERVL 1 443 0 550 246 71 28 chr3 5988111 5988240 -221536338 + MER33 DNA MER1_type 77 220 -104 432 0 0 0 chr3 5988244 5988292 -221536286 + (TA)n Simple_repeat Simple_repeat 2 49 0 7744 6 0 0 chr3 5988296 5989386 -221535192 - L1HS LINE L1 0 6155 5066 2083 26 0 8 chr3 5989382 5989646 -221534932 + L1P LINE L1 3581 3842 -2304 * 1371 221 3 3 chr3 5989788 5990073 -221534505 - AluSp SINE Alu -28 285 1 363 180 0 0 chr3 5991557 5991646 -221532932 - Charlie5 DNA MER1_type -50 2562 2474 13408 45 1 3 chr3 5991650 5993411 -221531167 - L1P LINE L1 -1075 5071 3316 232 206 38 0 chr3 5993553 5993684 -221530894 + C-rich Low_complexity Low_complexity 3 138 0 2020 213 59 6 chr3 5993692 5994231 -221530347 - L1MB7 LINE L1 -14 6170 5603 306 206 0 16 chr3 5994234 5994297 -221530281 + L1MCa LINE L1 2006 2067 -4359 1497 183 59 7 chr3 5994302 5994575 -221530003 - AluJo SINE Alu -25 287 1 333 159 95 0 chr3 5994575 5994638 -221529940 - L1MB7 LINE L1 -554 5620 5552 806 313 57 32 chr3 5994743 5995149 -221529429 + LTR16A LTR ERVL 1 416 -34 1512 159 12 12 chr3 5995577 5995828 -221528750 + AluJo SINE Alu 13 263 -49 495 0 0 0 chr3 5995845 5995900 -221528678 + (TCTA)n Simple_repeat Simple_repeat 4 58 0 269 339 110 9 chr3 5995956 5996065 -221528513 - MIR3 SINE MIR -3 205 86 183 80 0 0 chr3 5996915 5996940 -221527638 + (TG)n Simple_repeat Simple_repeat 1 25 0 274 44 22 22 chr3 5996940 5996985 -221527593 + (GA)n Simple_repeat Simple_repeat 2 46 0 205 204 23 0 chr3 5996985 5997029 -221527549 + GA-rich Low_complexity Low_complexity 5 49 0 407 325 20 24 chr3 5997221 5997406 -221527172 + MIR SINE MIR 52 235 -27 1089 41 75 0 chr3 5998042 5998189 -221526389 + L1PA4 LINE L1 5992 6149 -6 186 43 0 0 chr3 5998467 5998490 -221526088 + (CA)n Simple_repeat Simple_repeat 2 24 0 253 376 86 4 chr3 5998575 5998766 -221525812 + MIR3 SINE MIR 2 204 -58 195 42 0 0 chr3 5998849 5998873 -221525705 + (A)n Simple_repeat Simple_repeat 1 24 0 6557 22 0 53 chr3 5998920 5999801 -221524777 - L1PA3 LINE L1 0 6155 5322 * 15777 32 3 0 chr3 5999798 6001782 -221522796 + L1PA3 LINE L1 3309 5298 -848 2237 106 3 13 chr3 6002204 6002515 -221522063 - AluSx SINE Alu -4 308 1 237 366 60 25 chr3 6003650 6003885 -221520693 - L2 LINE L2 -221 3051 2809 1144 242 104 41 chr3 6004441 6004929 -221519649 + MLT1K LTR MaLR 12 530 -58 957 195 91 0 chr3 6006304 6006525 -221518053 - MLT1D LTR MaLR -1 504 264 1001 156 25 0 chr3 6006614 6006774 -221517804 - AluSg/x SINE Alu -12 298 135 343 284 74 14 chr3 6006850 6006998 -221517580 + Charlie8 DNA MER1_type 5 161 -2256 23 33 0 0 chr3 6007595 6007625 -221516953 + AT_rich Low_complexity Low_complexity 1 30 0 207 0 0 0 chr3 6008078 6008101 -221516477 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 40643 35 22 1 chr3 6008101 6014118 -221510460 - L1PA2 LINE L1 -11 6144 1 21 0 0 0 chr3 6014913 6014934 -221509644 + AT_rich Low_complexity Low_complexity 1 21 0 279 79 0 0 chr3 6014987 6015025 -221509553 + (TG)n Simple_repeat Simple_repeat 2 39 0 1459 156 44 10 chr3 6015307 6015602 -221508976 - Tigger1 DNA MER2_type 0 2418 2114 772 133 67 0 chr3 6015587 6015722 -221508856 + Tigger1 DNA MER2_type 941 1084 -1334 * 10438 139 46 38 chr3 6015732 6017197 -221507381 - Tigger1 DNA MER2_type -296 2122 632 1638 149 30 11 chr3 6017197 6017466 -221507112 - AluSx SINE Alu -38 274 1 10438 139 46 38 chr3 6017466 6018095 -221506483 - Tigger1 DNA MER2_type -1786 632 10 264 368 18 18 chr3 6019412 6019526 -221505052 - MIR SINE MIR -115 147 34 2282 112 7 0 chr3 6020667 6020972 -221503606 + AluSg SINE Alu 1 307 -3 26332 113 21 16 chr3 6020974 6025301 -221499277 + L1P LINE L1 11 4362 -1784 1469 213 68 24 chr3 6025331 6025712 -221498866 + LTR9 LTR ERV1 215 612 0 338 357 61 5 chr3 6025775 6025977 -221498601 - MIR SINE MIR -30 232 20 31 82 0 0 chr3 6026496 6026569 -221498009 + AT_rich Low_complexity Low_complexity 1 73 0 269 317 99 5 chr3 6026630 6026832 -221497746 - L1ME LINE L1 -289 5832 5612 13436 84 8 0 chr3 6026961 6029569 -221495009 + L1PA7 LINE L1 3509 6138 -16 2814 174 40 10 chr3 6029573 6030752 -221493826 + L1MC1 LINE L1 4992 6321 -12 195 42 0 0 chr3 6030752 6030776 -221493802 + (TTTA)n Simple_repeat Simple_repeat 1 24 0 658 182 0 0 chr3 6030783 6030893 -221493685 - FLAM_A SINE Alu -32 110 1 1196 215 34 4 chr3 6031179 6031412 -221493166 + AluJb SINE Alu 50 289 -23 886 316 149 25 chr3 6031875 6032398 -221492180 + L2 LINE L2 2154 2741 -573 208 383 0 54 chr3 6032515 6032682 -221491896 + L2 LINE L2 2897 3054 -218 26 30 0 0 chr3 6033085 6033118 -221491460 + AT_rich Low_complexity Low_complexity 1 33 0 305 254 175 26 chr3 6033118 6033232 -221491346 - MIR3 SINE MIR -40 168 38 356 362 8 8 chr3 6036000 6036127 -221488451 - MIR3 SINE MIR -6 202 76 2644 219 95 37 chr3 6036474 6037229 -221487349 + MER21B LTR ERV1 13 811 -52 1909 167 10 6 chr3 6037323 6037634 -221486944 - AluJo SINE Alu 0 312 1 548 322 70 35 chr3 6037742 6037941 -221486637 - MIR SINE MIR -1 261 56 234 345 84 28 chr3 6038346 6038488 -221486090 + MIR SINE MIR 6 155 -107 407 269 156 19 chr3 6039226 6039438 -221485140 + L2 LINE L2 2804 3044 -228 494 261 106 6 chr3 6039953 6040133 -221484445 + L2 LINE L2 3114 3311 -2 840 217 33 5 chr3 6040285 6040469 -221484109 + MER5A DNA MER1_type 1 189 0 330 302 86 7 chr3 6040586 6040725 -221483853 + MIR SINE MIR 2 151 -111 2316 110 0 3 chr3 6040797 6041107 -221483471 + AluSc SINE Alu 1 309 0 265 321 46 9 chr3 6041128 6041237 -221483341 - MIR SINE MIR -2 260 148 266 202 95 24 chr3 6042351 6042435 -221482143 - MLT1K LTR MaLR -7 581 492 410 325 7 13 chr3 6043419 6043573 -221481005 - MIR SINE MIR -109 153 1 736 295 13 30 chr3 6043887 6044121 -221480457 - MIR SINE MIR -19 243 14 191 309 119 8 chr3 6044429 6044555 -221480023 + MIR SINE MIR 62 201 -7 241 243 121 43 chr3 6045119 6045259 -221479319 - L1ME4a LINE L1 -16 6105 5955 276 223 88 34 chr3 6045374 6045522 -221479056 - L1ME4a LINE L1 -1 6120 5965 484 259 0 36 chr3 6045635 6045747 -221478831 + L2 LINE L2 3165 3272 0 270 0 0 0 chr3 6045908 6045938 -221478640 + (CA)n Simple_repeat Simple_repeat 2 31 0 680 273 18 6 chr3 6046530 6046695 -221477883 - MIR3 SINE MIR -9 199 33 227 190 17 0 chr3 6046772 6046830 -221477748 + GA-rich Low_complexity Low_complexity 4 62 0 527 294 43 27 chr3 6047486 6047670 -221476908 - MER5A DNA MER1_type -2 187 1 478 267 47 34 chr3 6047902 6048113 -221476465 + MIR3 SINE MIR 10 223 -39 22 35 0 0 chr3 6049039 6049068 -221475510 + AT_rich Low_complexity Low_complexity 1 29 0 802 166 18 31 chr3 6049072 6049235 -221475343 - MLT1B LTR MaLR -45 345 185 40 0 0 0 chr3 6049623 6049663 -221474915 + AT_rich Low_complexity Low_complexity 1 40 0 366 0 56 0 chr3 6049812 6049866 -221474712 + (TA)n Simple_repeat Simple_repeat 1 57 0 29494 100 15 7 chr3 6049868 6055602 -221468976 - L1PA7 LINE L1 -16 6453 648 363 202 0 24 chr3 6055600 6055684 -221468894 - L1ME LINE L1 -654 5788 5707 * 428 281 17 6 chr3 6055717 6055895 -221468683 - L1ME LINE L1 -958 5468 5289 1396 83 10 0 chr3 6055906 6056111 -221468467 + L1PA13 LINE L1 5855 6061 -102 400 70 0 0 chr3 6056111 6056168 -221468410 - MLT2B1 LTR ERVL 0 520 464 326 183 42 0 chr3 6056173 6056244 -221468334 + L1MCa LINE L1 1995 2068 -4358 2750 111 15 0 chr3 6056257 6056664 -221467914 - MLT2A2 LTR ERVL -40 413 1 607 102 51 0 chr3 6056666 6056764 -221467814 + L1PA13 LINE L1 6059 6161 -2 1171 237 95 43 chr3 6056764 6057184 -221467394 - L1ME LINE L1 -1162 5264 4800 2367 97 0 0 chr3 6057184 6057474 -221467104 + AluSx SINE Alu 1 290 -22 1171 237 95 43 chr3 6057474 6057673 -221466905 - L1ME LINE L1 -1626 4800 4613 297 347 56 0 chr3 6057878 6058022 -221466556 - MIR3 SINE MIR -3 205 54 771 224 106 8 chr3 6058249 6058495 -221466083 + L1M4 LINE L1 3504 3773 -2373 * 5047 181 48 50 chr3 6058494 6059739 -221464839 - L1ME LINE L1 -5143 1283 41 2732 241 65 2 chr3 6059739 6060572 -221464006 + L1ME1 LINE L1 3819 4703 -1443 12479 170 29 10 chr3 6060575 6061934 -221462644 + L1MA3 LINE L1 13 1345 -6220 1229 167 121 74 chr3 6061934 6062364 -221462214 - LTR7 LTR ERV1 0 450 1 12479 170 29 10 chr3 6062364 6064640 -221459938 + L1MA3 LINE L1 1345 4405 -3160 5957 136 35 7 chr3 6064639 6066386 -221458192 + L1MA3 LINE L1 5939 7724 0 * 3321 214 64 36 chr3 6066388 6066594 -221457984 + L1ME1 LINE L1 4699 4898 -1268 3012 166 10 53 chr3 6066594 6067173 -221457405 - MLT2B3 LTR ERVL 0 554 1 3321 214 64 36 chr3 6067173 6068383 -221456195 + L1ME1 LINE L1 4898 6157 -9 1557 142 59 4 chr3 6069977 6070216 -221454362 + AluJb SINE Alu 3 254 -58 1682 264 64 38 chr3 6070439 6071076 -221453502 - MER76 LTR ERV -34 654 1 323 289 29 0 chr3 6072662 6072766 -221451812 - MIR SINE MIR 0 262 156 770 210 59 0 chr3 6073135 6073321 -221451257 - MER3 DNA MER1_type -12 197 1 619 322 58 37 chr3 6073426 6073667 -221450911 - MIR SINE MIR 0 262 18 22 0 0 0 chr3 6073771 6073793 -221450785 + AT_rich Low_complexity Low_complexity 1 22 0 727 240 84 51 chr3 6073805 6074101 -221450477 - MER21B LTR ERV1 -150 713 408 670 196 37 0 chr3 6074129 6074292 -221450286 - MER3 DNA MER1_type -87 122 1 651 264 94 58 chr3 6074473 6074833 -221449745 - MER21B LTR ERV1 -485 378 6 200 241 17 0 chr3 6074884 6074942 -221449636 + (TA)n Simple_repeat Simple_repeat 1 59 0 434 317 72 24 chr3 6074963 6075130 -221449448 - MIR3 SINE MIR -11 197 23 219 286 50 101 chr3 6075176 6075414 -221449164 + L2 LINE L2 2832 3057 -215 772 304 206 19 chr3 6075525 6075986 -221448592 + L2 LINE L2 2305 2851 -463 683 286 161 23 chr3 6076199 6076541 -221448037 + L2 LINE L2 2925 3313 0 297 301 150 0 chr3 6076546 6076659 -221447919 + L2 LINE L2 3137 3266 -6 257 178 0 0 chr3 6076689 6076734 -221447844 + MIR SINE MIR 81 125 -137 274 167 61 0 chr3 6078371 6078437 -221446141 - MER116 DNA Mariner -10 70 1 884 266 40 4 chr3 6078546 6078772 -221445806 - MIR SINE MIR -27 235 2 877 123 7 32 chr3 6078903 6079057 -221445521 + L1MC1 LINE L1 5979 6128 -205 1058 89 0 7 chr3 6079061 6079196 -221445382 + AluSc SINE Alu 155 288 -21 1220 130 28 14 chr3 6079196 6079411 -221445167 + L1MC1 LINE L1 6116 6333 0 391 279 131 25 chr3 6079820 6079942 -221444636 - L2 LINE L2 -1 3271 3137 1775 179 3 0 chr3 6079995 6080292 -221444286 - AluJo SINE Alu -14 298 1 2161 114 7 3 chr3 6082430 6082728 -221441850 + AluSx SINE Alu 1 299 -13 614 230 14 7 chr3 6083008 6083156 -221441422 + AluSc SINE Alu 132 280 -29 2144 152 0 0 chr3 6083338 6083648 -221440930 - AluSx SINE Alu 0 312 3 1553 160 4 30 chr3 6083659 6083928 -221440650 - AluSx SINE Alu -2 310 49 190 196 179 0 chr3 6084935 6084991 -221439587 + MIR SINE MIR 118 183 -79 240 87 43 58 chr3 6085384 6085453 -221439125 + (TATAA)n Simple_repeat Simple_repeat 3 70 0 626 290 127 35 chr3 6085717 6086031 -221438547 - MER115 DNA AcHobo -1 692 350 682 301 30 15 chr3 6086166 6086365 -221438213 - MIR3 SINE MIR -3 205 4 1090 184 0 0 chr3 6086949 6087123 -221437455 - AluJb SINE Alu -8 304 131 333 0 0 0 chr3 6087123 6087160 -221437418 + (TG)n Simple_repeat Simple_repeat 2 38 0 35346 91 8 7 chr3 6087160 6093285 -221431293 - L1PA6 LINE L1 -22 6132 1 727 153 0 58 chr3 6093292 6093429 -221431149 - AluSq/x SINE Alu -184 129 1 2482 76 0 0 chr3 6093466 6093769 -221430809 - AluY SINE Alu -8 303 1 5414 67 3 0 chr3 6093835 6094557 -221430021 - L1PA7 LINE L1 -32 6122 5399 3972 98 12 33 chr3 6094557 6095232 -221429346 + L1PA7 LINE L1 4728 5388 -758 742 234 6 12 chr3 6095236 6095403 -221429175 + MIR SINE MIR 74 239 -23 334 390 45 35 chr3 6095474 6095877 -221428701 + L2 LINE L2 2323 2729 -585 24 0 0 0 chr3 6096306 6096330 -221428248 + AT_rich Low_complexity Low_complexity 1 24 0 1103 201 20 24 chr3 6097019 6097312 -221427266 - L1M4 LINE L1 -1168 4978 4687 414 286 118 12 chr3 6097406 6097567 -221427011 - MER5B DNA MER1_type 0 178 1 1040 214 27 18 chr3 6097589 6097809 -221426769 - MER58A DNA MER1_type -1 223 2 1466 202 106 32 chr3 6098185 6098620 -221425958 - MLT1C LTR MaLR 0 467 1 596 286 94 5 chr3 6098996 6099209 -221425369 - MIR SINE MIR -5 257 26 1133 104 15 157 chr3 6100155 6100458 -221424120 + LTR12 LTR ERV1 1 1982 -456 337 75 0 0 chr3 6100519 6100572 -221424006 + LTR12 LTR ERV1 233 285 -429 335 194 0 0 chr3 6100573 6100645 -221423933 + LTR30 LTR ERV1 553 624 -98 710 142 64 79 chr3 6100645 6100809 -221423769 + LTR12 LTR ERV1 301 483 -231 * 17436 118 16 11 chr3 6100785 6103831 -221420747 + HERV9 LTR ERV1 55 3122 -5277 432 303 70 7 chr3 6104084 6104226 -221420352 + MIR3 SINE MIR 4 154 -54 2922 3 0 0 chr3 6104367 6104678 -221419900 - AluYa5 SINE Alu 0 311 1 471 155 0 0 chr3 6104720 6104804 -221419774 + CT-rich Low_complexity Low_complexity 3 86 0 23349 127 21 8 chr3 6105236 6107644 -221416934 + L1M1 LINE L1 13 2483 -5082 1935 128 0 0 chr3 6107644 6107901 -221416677 + AluSx SINE Alu 45 301 -11 23349 127 21 8 chr3 6107901 6108978 -221415600 + L1M1 LINE L1 2483 3544 -4021 1131 113 38 0 chr3 6108973 6109159 -221415419 + L1M1 LINE L1 3035 3227 -4338 * 3369 186 13 55 chr3 6109132 6109903 -221414675 + L1M1 LINE L1 3538 4276 -3289 278 303 34 84 chr3 6109949 6110068 -221414510 + L2 LINE L2 3134 3246 -26 22 35 0 0 chr3 6111284 6111313 -221413265 + AT_rich Low_complexity Low_complexity 1 29 0 372 301 24 0 chr3 6111661 6111744 -221412834 - L2 LINE L2 -38 3275 3191 284 295 78 66 chr3 6111808 6111974 -221412604 + MIR3 SINE MIR 19 186 -22 262 282 14 0 chr3 6112153 6112224 -221412354 - MLT1K LTR MaLR -349 239 168 492 280 126 6 chr3 6112390 6112565 -221412013 - LTR67 LTR ERVL -9 548 353 220 156 0 22 chr3 6113429 6113474 -221411104 + L2 LINE L2 3270 3313 0 637 301 59 35 chr3 6113476 6113719 -221410859 + MIR SINE MIR 3 258 -4 302 317 49 28 chr3 6113916 6114058 -221410520 + L2 LINE L2 2932 3076 -196 34 24 0 0 chr3 6114282 6114323 -221410255 + AT_rich Low_complexity Low_complexity 1 41 0 1676 193 7 16 chr3 6114625 6114931 -221409647 + AluJo SINE Alu 1 303 -9 369 78 0 0 chr3 6114983 6115034 -221409544 - L1MA8 LINE L1 -25 6266 6216 1651 177 0 16 chr3 6115548 6115858 -221408720 + AluJb SINE Alu 1 305 -7 1620 117 36 0 chr3 6116314 6116536 -221408042 - MER30 DNA MER1_type 0 230 1 297 0 0 0 chr3 6116540 6116551 -221408027 + (TG)n Simple_repeat Simple_repeat 1 44 0 297 0 0 0 chr3 6116551 6116584 -221407994 + (TG)n Simple_repeat Simple_repeat 2 34 0 321 311 0 0 chr3 6116614 6116704 -221407874 - L1MC4 LINE L1 -1339 6703 6614 273 269 99 14 chr3 6116710 6116851 -221407727 + L1MC4 LINE L1 6614 6766 -1276 340 276 16 0 chr3 6116851 6116974 -221407604 + (TA)n Simple_repeat Simple_repeat 1 125 0 1552 165 16 41 chr3 6117452 6117574 -221407004 + AluJo SINE Alu 1 125 -187 1891 120 49 7 chr3 6117574 6117858 -221406720 - AluSq SINE Alu -17 296 1 1552 165 16 41 chr3 6117858 6118051 -221406527 + AluJo SINE Alu 125 308 -4 247 300 65 47 chr3 6118527 6118697 -221405881 + L3 LINE CR1 1346 1518 -59 778 294 23 23 chr3 6119373 6119594 -221404984 + MER58A DNA MER1_type 4 224 0 193 289 26 53 chr3 6120634 6120710 -221403868 + MIR3 SINE MIR 103 176 -32 3809 9 12 5 chr3 6120727 6121158 -221403420 - L1PA4 LINE L1 -420 5735 5302 3905 40 0 0 chr3 6121158 6121602 -221402976 + L1PA4 LINE L1 5711 6155 0 245 314 95 0 chr3 6122576 6122745 -221401833 + L3 LINE CR1 1231 1415 -162 308 250 25 12 chr3 6122794 6122874 -221401704 - L2 LINE L2 0 3313 3233 2333 78 20 0 chr3 6122924 6123220 -221401358 - AluY SINE Alu -9 302 1 1624 160 87 3 chr3 6123871 6124158 -221400420 + AluJb SINE Alu 1 311 -1 383 312 153 0 chr3 6124195 6124352 -221400226 - MER5A DNA MER1_type 0 189 9 289 213 277 32 chr3 6124350 6124505 -221400073 + MIR3 SINE MIR 16 208 0 * 220 319 92 17 chr3 6125631 6125750 -221398828 - L2 LINE L2 -1 3271 3144 195 265 0 20 chr3 6126028 6126077 -221398501 + MER5B DNA MER1_type 2 49 -129 257 0 30 0 chr3 6126435 6126468 -221398110 + (TTTG)n Simple_repeat Simple_repeat 1 34 0 869 183 0 0 chr3 6126472 6126609 -221397969 - FRAM SINE Alu -27 149 13 26 0 0 0 chr3 6127399 6127425 -221397153 + AT_rich Low_complexity Low_complexity 1 26 0 21 0 0 0 chr3 6127547 6127568 -221397010 + AT_rich Low_complexity Low_complexity 1 21 0 241 117 83 83 chr3 6128485 6128545 -221396033 + MER63C DNA MER1_type 1 60 -870 3141 191 42 13 chr3 6128928 6129565 -221395013 + MER63C DNA MER1_type 68 723 -207 1465 256 43 104 chr3 6129585 6130164 -221394414 - MER77 LTR ERV1 -4 601 58 2489 216 43 13 chr3 6130190 6130815 -221393763 - L1M4 LINE L1 -1541 4605 3962 24542 41 2 2 chr3 6130815 6134446 -221390132 - L1PA5 LINE L1 0 6154 2524 657 232 21 0 chr3 6134447 6134589 -221389989 - ERVL LTR ERVL -5072 692 548 3607 83 0 7 chr3 6134589 6135036 -221389542 - MLT2A1 LTR ERVL 0 444 1 43708 82 5 9 chr3 6135036 6140714 -221383864 - HERVL-A1 LTR ERVL 0 5654 1 3601 89 0 11 chr3 6140714 6141163 -221383415 - MLT2A1 LTR ERVL 0 444 1 257 326 11 0 chr3 6141163 6141255 -221383323 - ERVL LTR ERVL -5123 531 439 254 260 177 21 chr3 6141293 6141485 -221383093 - L1MC4 LINE L1 -962 7080 6859 511 301 103 66 chr3 6142415 6142478 -221382100 + L3 LINE CR1 278 337 -1240 1647 205 0 7 chr3 6142478 6142776 -221381802 + AluJb SINE Alu 1 296 -16 511 301 103 66 chr3 6142776 6143031 -221381547 + L3 LINE CR1 337 608 -969 1103 182 35 5 chr3 6143095 6143298 -221381280 + MER3 DNA MER1_type 1 209 0 199 359 60 17 chr3 6143421 6143538 -221381040 - MIR SINE MIR -68 140 19 410 328 23 45 chr3 6144647 6144824 -221379754 - MIR3 SINE MIR -35 173 1 429 310 117 29 chr3 6145213 6145494 -221379084 + L2 LINE L2 3008 3313 0 1765 172 6 19 chr3 6145871 6146185 -221378393 - L1MB5 LINE L1 0 6174 5865 1069 154 22 66 chr3 6146189 6146288 -221378290 - L1MB5 LINE L1 -368 5806 5704 3257 100 22 2 chr3 6146288 6146736 -221377842 + L1PA13 LINE L1 5703 6163 0 1069 154 22 66 chr3 6146736 6146863 -221377715 - L1MB5 LINE L1 -470 5704 5590 211 329 12 12 chr3 6147123 6147205 -221377373 + MIR SINE MIR 59 140 -122 326 306 36 0 chr3 6147249 6147360 -221377218 - MIR3 SINE MIR -9 199 85 289 356 10 10 chr3 6147527 6147631 -221376947 - MIR SINE MIR -112 150 47 401 357 51 13 chr3 6148141 6148298 -221376280 - L2 LINE L2 -6 3266 3104 306 50 0 0 chr3 6148716 6148756 -221375822 + (TG)n Simple_repeat Simple_repeat 1 40 0 378 293 110 12 chr3 6148857 6149021 -221375557 - L2 LINE L2 -227 3045 2866 347 326 214 29 chr3 6149302 6149887 -221374691 - L2 LINE L2 -838 2476 1784 290 235 12 47 chr3 6149900 6149985 -221374593 - HAL1 LINE L1 -6 2501 2420 * 524 236 88 27 chr3 6149974 6150237 -221374341 - HAL1 LINE L1 -1254 1253 975 216 276 169 34 chr3 6150716 6150924 -221373654 - MIR SINE MIR -11 251 9 22 0 0 0 chr3 6151257 6151279 -221373299 + AT_rich Low_complexity Low_complexity 1 22 0 446 259 60 55 chr3 6152199 6152400 -221372178 + MIR SINE MIR 14 215 -47 3705 166 78 46 chr3 6152794 6153553 -221371025 - LTR1 LTR ERV1 -2 783 1 1312 77 4 170 chr3 6154841 6154929 -221369649 + L1MA4A LINE L1 6067 6168 -135 1540 186 18 7 chr3 6154929 6155204 -221369374 - AluJo SINE Alu -32 280 3 1312 77 4 170 chr3 6155204 6155374 -221369204 + L1MA4A LINE L1 6168 6282 -21 375 249 16 124 chr3 6156595 6156701 -221367877 + MER112 DNA MER1_type 1 78 -182 2046 88 0 76 chr3 6156701 6157018 -221367560 - AluSc SINE Alu -16 293 1 375 249 16 124 chr3 6157018 6157104 -221367474 + MER112 DNA MER1_type 78 172 -88 1285 194 8 25 chr3 6157109 6157346 -221367232 - MER8 DNA MER2_type 0 239 7 5556 32 0 2 chr3 6157449 6158064 -221366514 - L1PA5 LINE L1 0 6154 5541 18850 44 2 0 chr3 6158064 6160347 -221364231 + L1P LINE L1 683 2968 -3178 259 132 0 0 chr3 6160357 6160395 -221364183 + MER112 DNA MER1_type 223 260 0 618 250 0 15 chr3 6160665 6160797 -221363781 - FRAM SINE Alu -55 121 1 230 319 11 85 chr3 6160945 6161039 -221363539 + MIR3 SINE MIR 12 98 -110 307 317 178 26 chr3 6162284 6162514 -221362064 + L1MC4a LINE L1 5616 5880 -1928 2971 141 16 22 chr3 6163101 6163611 -221360967 - L1MA7 LINE L1 -172 6119 5613 270 56 0 0 chr3 6163755 6163791 -221360787 + (GA)n Simple_repeat Simple_repeat 1 36 0 527 250 75 42 chr3 6163854 6164041 -221360537 - LTR33 LTR ERVL -300 221 25 2169 142 44 33 chr3 6164041 6164401 -221360177 - THE1B LTR MaLR 0 364 1 527 250 75 42 chr3 6164401 6164425 -221360153 - LTR33 LTR ERVL -496 25 3 365 294 106 11 chr3 6164621 6164801 -221359777 + MIR SINE MIR 66 262 0 2274 116 0 7 chr3 6165235 6165538 -221359040 + AluSx SINE Alu 1 301 -11 186 137 68 14 chr3 6165570 6165643 -221358935 + CT-rich Low_complexity Low_complexity 2 78 0 224 344 47 0 chr3 6165722 6165786 -221358792 - L2 LINE L2 -92 3180 3114 2392 119 43 27 chr3 6166280 6166649 -221357929 + THE1C LTR MaLR 1 375 0 7818 158 33 43 chr3 6166749 6169196 -221355382 - L1MA6 LINE L1 -86 6214 3791 2345 90 0 7 chr3 6170879 6171189 -221353389 - AluSx SINE Alu -4 308 1 573 305 145 15 chr3 6171458 6171720 -221352858 + MER102b DNA MER1_type 43 338 -3 234 212 67 30 chr3 6173137 6173302 -221351276 + (CAAA)n Simple_repeat Simple_repeat 3 173 0 617 196 96 60 chr3 6173452 6173651 -221350927 - L1M4 LINE L1 -4871 1671 1466 1693 176 3 28 chr3 6173657 6173975 -221350603 - AluJo SINE Alu -2 310 1 198 0 0 0 chr3 6173976 6173998 -221350580 + (TTTA)n Simple_repeat Simple_repeat 3 24 0 22 0 0 0 chr3 6173998 6174020 -221350558 + AT_rich Low_complexity Low_complexity 1 22 0 483 184 11 152 chr3 6174301 6174514 -221350064 + L1MC5 LINE L1 7545 7712 -249 1731 164 45 3 chr3 6174514 6174800 -221349778 - AluJb SINE Alu -14 298 1 483 184 11 152 chr3 6174800 6174863 -221349715 + L1MC5 LINE L1 7712 7782 -179 829 223 13 12 chr3 6174906 6175208 -221349370 + MLT2F LTR ERVL 8 376 -287 560 273 0 27 chr3 6175385 6175535 -221349043 - MIR SINE MIR -64 198 53 421 217 22 0 chr3 6176337 6176429 -221348149 + MER94 DNA DNA 10 103 -31 483 282 25 0 chr3 6176441 6176582 -221347996 - MIR SINE MIR -62 146 2 872 269 49 4 chr3 6178233 6178478 -221346100 - MIR SINE MIR -4 258 3 266 304 128 20 chr3 6178561 6178663 -221345915 + L2 LINE L2 3155 3267 -5 24 0 0 0 chr3 6178971 6178995 -221345583 + AT_rich Low_complexity Low_complexity 1 24 0 1925 140 61 3 chr3 6180088 6180381 -221344197 - AluSg SINE Alu 0 310 1 375 282 172 6 chr3 6180971 6181145 -221343433 - MIR SINE MIR -12 250 48 5216 56 0 2 chr3 6181160 6181768 -221342810 - L1PA6 LINE L1 -3 6151 5545 238 339 85 23 chr3 6181920 6182050 -221342528 - MIR3 SINE MIR -69 139 2 200 303 100 74 chr3 6182629 6182900 -221341678 + L2 LINE L2 2985 3262 -10 496 290 129 28 chr3 6182904 6183152 -221341426 + L3 LINE CR1 605 877 -700 236 315 65 0 chr3 6183210 6183318 -221341260 + L3 LINE CR1 842 956 -621 552 283 46 32 chr3 6183428 6183647 -221340931 - MIR SINE MIR -27 235 14 817 329 62 48 chr3 6183683 6184185 -221340393 + L3 LINE CR1 1019 1527 -50 1996 98 4 25 chr3 6184827 6185123 -221339455 + AluSp SINE Alu 21 310 0 194 227 0 23 chr3 6185178 6185222 -221339356 + L2 LINE L2 3262 3304 -9 1966 156 0 3 chr3 6185716 6186018 -221338560 - AluJb SINE Alu -10 302 2 2135 127 0 13 chr3 6186705 6187020 -221337558 + AluSx SINE Alu 1 311 -1 234 0 0 0 chr3 6187417 6187443 -221337135 + (CA)n Simple_repeat Simple_repeat 2 27 0 393 282 87 28 chr3 6188298 6188550 -221336028 + L1MCc LINE L1 1177 1443 -4980 225 333 0 0 chr3 6188560 6188641 -221335937 + L1MC/D LINE L1 5428 5508 -734 832 176 0 0 chr3 6188875 6189006 -221335572 + FLAM_C SINE Alu 1 131 -12 2043 110 36 7 chr3 6189018 6189319 -221335259 + AluSx SINE Alu 1 310 -2 492 310 123 0 chr3 6189349 6189536 -221335042 - L2 LINE L2 -541 2773 2564 21 57 0 0 chr3 6192149 6192184 -221332394 + AT_rich Low_complexity Low_complexity 1 35 0 1707 174 3 20 chr3 6192931 6193230 -221331348 + AluSx SINE Alu 1 294 -18 1980 125 59 0 chr3 6193849 6194136 -221330442 + AluSx SINE Alu 1 304 -8 230 132 26 0 chr3 6194145 6194183 -221330395 + MLT1B LTR MaLR 352 390 0 2855 141 7 16 chr3 6194425 6194865 -221329713 + L1PA15 LINE L1 5728 6163 -2 2378 84 7 0 chr3 6195456 6195765 -221328813 + L1PB1 LINE L1 5841 6151 0 606 230 57 63 chr3 6195881 6196033 -221328545 + L1MC5 LINE L1 7027 7178 -801 1839 150 0 14 chr3 6196033 6196320 -221328258 + AluJb SINE Alu 1 283 -29 183 42 0 0 chr3 6196323 6196347 -221328231 + (CAAA)n Simple_repeat Simple_repeat 2 25 0 606 230 57 63 chr3 6196347 6196417 -221328161 + L1MC5 LINE L1 7180 7251 -728 285 98 0 0 chr3 6196586 6196627 -221327951 + (CA)n Simple_repeat Simple_repeat 2 42 0 431 218 44 118 chr3 6196636 6196777 -221327801 + L1MC5 LINE L1 7310 7460 -501 4795 68 0 3 chr3 6196777 6197355 -221327223 + L1PA7 LINE L1 5579 6154 0 431 218 44 118 chr3 6197355 6197366 -221327212 + L1MC5 LINE L1 7460 7470 -491 2227 129 0 0 chr3 6197366 6197677 -221326901 + AluSx SINE Alu 1 311 -1 431 218 44 118 chr3 6197677 6197752 -221326826 + L1MC5 LINE L1 7470 7521 -440 1520 213 216 17 chr3 6197780 6198188 -221326390 + LTR40a LTR ERVL 31 519 0 336 254 71 61 chr3 6198226 6198521 -221326057 - L1MCa LINE L1 -4387 2039 1742 * 5045 189 45 19 chr3 6198517 6199144 -221325434 - L1MD1 LINE L1 -1 6241 5632 2122 125 0 3 chr3 6199144 6199455 -221325123 - AluSx SINE Alu -2 310 1 5045 189 45 19 chr3 6199455 6200732 -221323846 - L1MD1 LINE L1 -610 5632 4288 2267 96 0 10 chr3 6202432 6202733 -221321845 + AluSg SINE Alu 1 298 -12 261 98 0 0 chr3 6209323 6209364 -221315214 + (TG)n Simple_repeat Simple_repeat 2 42 0 25 31 0 0 chr3 6209412 6209444 -221315134 + AT_rich Low_complexity Low_complexity 1 32 0 241 366 41 8 chr3 6210164 6210287 -221314291 - L2 LINE L2 -4 3268 3142 459 246 16 96 chr3 6210930 6211117 -221313461 + MIR SINE MIR 37 208 -54 1297 135 5 0 chr3 6212407 6212599 -221311979 - AluSg/x SINE Alu -6 306 114 629 201 14 21 chr3 6213860 6214004 -221310574 + Tigger3(Golem) DNA MER2_type 2886 3028 -1 1002 151 25 0 chr3 6214400 6214559 -221310019 + AluSg/x SINE Alu 120 282 -28 429 20 0 0 chr3 6214559 6214609 -221309969 + (CA)n Simple_repeat Simple_repeat 2 51 0 1538 156 101 0 chr3 6215083 6215397 -221309181 + MER2 DNA MER2_type 1 345 0 612 162 40 23 chr3 6221961 6222270 -221302308 + (TTAGGG)n Simple_repeat Simple_repeat 1 314 0 199 250 135 0 chr3 6222580 6222632 -221301946 + MIR SINE MIR 86 144 -118 2114 151 41 17 chr3 6223461 6223877 -221300701 - MSTB1 LTR MaLR -6 426 1 275 280 70 32 chr3 6224505 6224662 -221299916 - L1MC5 LINE L1 -91 7870 7708 2128 113 16 13 chr3 6225447 6225757 -221298821 + AluSx SINE Alu 2 312 0 216 323 0 15 chr3 6226176 6226241 -221298337 + MIR SINE MIR 186 249 -13 2410 97 0 0 chr3 6228409 6228719 -221295859 + AluSg SINE Alu 1 310 0 1299 185 37 54 chr3 6229257 6229555 -221295023 + AluJo SINE Alu 1 293 -19 271 315 61 42 chr3 6229764 6229929 -221294649 - L2 LINE L2 -17 3296 3129 253 244 0 13 chr3 6231065 6231143 -221293435 - MLT1B LTR MaLR -234 156 80 1907 120 0 7 chr3 6232365 6232639 -221291939 - AluSx SINE Alu -40 272 1 2370 113 49 0 chr3 6239413 6239759 -221284819 + THE1B LTR MaLR 2 364 0 565 99 0 55 chr3 6242346 6242437 -221282141 - AluSg/x SINE Alu -16 294 209 409 301 90 48 chr3 6242713 6243090 -221281488 + L1ME LINE L1 5259 5662 -459 2266 103 3 23 chr3 6243090 6243400 -221281178 + AluSx SINE Alu 3 306 -6 409 301 90 48 chr3 6243400 6243500 -221281078 + L1ME LINE L1 5662 5756 -365 363 303 113 33 chr3 6244292 6244479 -221280099 + MIR3 SINE MIR 2 203 -5 504 296 87 24 chr3 6246788 6246994 -221277584 - MIR SINE MIR 0 262 44 2165 119 6 16 chr3 6248363 6248536 -221276042 - AluSx SINE Alu -4 308 138 1932 124 72 0 chr3 6248536 6248707 -221275871 - AluSq SINE Alu -2 311 109 188 35 35 0 chr3 6248707 6248736 -221275842 + (TTTTG)n Simple_repeat Simple_repeat 3 32 0 1932 124 72 0 chr3 6248736 6248854 -221275724 - AluSq SINE Alu -204 109 1 2165 119 6 16 chr3 6248854 6248991 -221275587 - AluSx SINE Alu -174 138 1 420 293 40 59 chr3 6248991 6249313 -221275265 - L1MCa LINE L1 -3863 2563 2242 520 271 50 14 chr3 6251584 6251768 -221272810 - MIR SINE MIR -6 256 68 191 253 36 96 chr3 6253374 6253457 -221271121 - L2 LINE L2 -2 3311 3234 438 220 47 27 chr3 6253996 6254146 -221270432 + CT-rich Low_complexity Low_complexity 5 157 0 905 83 61 8 chr3 6255983 6256115 -221268463 + MER85 DNA T2_type 1 139 0 922 76 8 23 chr3 6257209 6257341 -221267237 + AluY SINE Alu 56 185 -126 272 342 9 0 chr3 6257851 6257965 -221266613 + MIR3 SINE MIR 85 199 -9 21 0 0 0 chr3 6258732 6258753 -221265825 + GC_rich Low_complexity Low_complexity 1 21 0 505 231 12 0 chr3 6260646 6260819 -221263759 + (CAT)n Simple_repeat Simple_repeat 3 177 0 729 213 4 0 chr3 6260845 6261086 -221263492 + (CAT)n Simple_repeat Simple_repeat 1 242 0 33 0 0 0 chr3 6261737 6261770 -221262808 + AT_rich Low_complexity Low_complexity 1 33 0 584 203 8 17 chr3 6262930 6263048 -221261530 - FLAM_A SINE Alu -15 118 2 2121 111 4 0 chr3 6263193 6263509 -221261069 + AluSx SINE Alu 1 317 0 226 441 31 31 chr3 6263967 6264094 -221260484 + polypurine Low_complexity Low_complexity 5 131 0 403 138 25 25 chr3 6266855 6266935 -221257643 - AluS SINE Alu -223 80 1 332 43 22 0 chr3 6269278 6269324 -221255254 + (TAA)n Simple_repeat Simple_repeat 1 47 0 258 56 0 0 chr3 6269362 6269398 -221255180 + (TG)n Simple_repeat Simple_repeat 2 37 0 430 339 20 8 chr3 6271106 6271465 -221253113 + (TGGG)n Simple_repeat Simple_repeat 1 363 0 250 341 8 8 chr3 6271439 6271571 -221253007 + G-rich Low_complexity Low_complexity 5 136 0 * 652 204 97 62 chr3 6273037 6273213 -221251365 + AluJo SINE Alu 2 183 -129 2190 113 0 0 chr3 6274274 6274556 -221250022 - AluSq SINE Alu -31 282 1 16860 32 3 0 chr3 6275414 6277398 -221247180 - L1PA2 LINE L1 -848 5298 3309 7138 30 0 0 chr3 6277398 6278241 -221246337 + L1PA2 LINE L1 5322 6167 0 23 33 0 0 chr3 6278694 6278724 -221245854 + AT_rich Low_complexity Low_complexity 1 30 0 395 265 58 85 chr3 6279246 6279469 -221245109 - Charlie8 DNA MER1_type -2196 221 5 998 137 0 0 chr3 6279559 6279705 -221244873 + AluSg/x SINE Alu 155 300 -12 1053 195 91 0 chr3 6279794 6280015 -221244563 + MLT1D LTR MaLR 264 504 -1 1316 242 104 41 chr3 6281390 6281878 -221242700 - MLT1K LTR MaLR -58 530 12 2238 107 3 13 chr3 6283804 6284114 -221240464 + AluSx SINE Alu 1 307 -5 16860 32 3 0 chr3 6284536 6286520 -221238058 - L1PA8 LINE L1 -848 5298 3309 5901 95 0 34 chr3 6286520 6287398 -221237180 + L1PA8 LINE L1 5322 6172 0 195 42 0 0 chr3 6287445 6287469 -221237109 + (T)n Simple_repeat Simple_repeat 1 24 0 201 404 43 14 chr3 6287599 6287740 -221236838 - MIR3 SINE MIR -58 150 6 186 43 0 0 chr3 6287828 6287851 -221236727 + (TG)n Simple_repeat Simple_repeat 2 24 0 1109 41 75 0 chr3 6288129 6288276 -221236302 - L1PA4 LINE L1 -6 6149 5992 360 315 20 27 chr3 6288912 6289061 -221235517 - MIR SINE MIR -27 235 88 205 204 23 0 chr3 6289289 6289333 -221235245 + CT-rich Low_complexity Low_complexity 5 49 0 274 44 22 22 chr3 6289333 6289378 -221235200 + (TC)n Simple_repeat Simple_repeat 2 46 0 183 80 0 0 chr3 6289378 6289403 -221235175 + (CA)n Simple_repeat Simple_repeat 1 25 0 238 339 110 9 chr3 6290253 6290362 -221234216 + MIR3 SINE MIR 86 205 -3 423 0 0 0 chr3 6290418 6290465 -221234113 + (TAGA)n Simple_repeat Simple_repeat 4 50 0 1515 159 12 12 chr3 6290482 6290733 -221233845 - AluJo SINE Alu -49 263 13 940 313 57 32 chr3 6291161 6291567 -221233011 - LTR16A LTR ERVL -34 416 1 355 155 84 28 chr3 6291664 6291735 -221232843 + L1MB7 LINE L1 5546 5620 -554 1491 183 59 7 chr3 6291735 6292008 -221232570 + AluJo SINE Alu 1 287 -25 369 162 0 0 chr3 6292008 6292076 -221232502 + (TA)n Simple_repeat Simple_repeat 1 68 0 2212 214 59 6 chr3 6292076 6292618 -221231960 + L1MB7 LINE L1 5600 6170 -14 622 176 16 0 chr3 6292626 6292937 -221231641 + G-rich Low_complexity Low_complexity 1 316 0 180 0 0 0 chr3 6293202 6293222 -221231356 + (CAAA)n Simple_repeat Simple_repeat 2 21 0 256 324 124 0 chr3 6293463 6293608 -221230970 - MIR SINE MIR -14 248 86 332 322 91 15 chr3 6293924 6294123 -221230455 - LTR16A LTR ERVL -5 445 232 782 291 76 64 chr3 6294450 6294872 -221229706 - MLT1L LTR MaLR -188 427 1 191 299 15 15 chr3 6296242 6296309 -221228269 - MER5B DNA MER1_type -111 67 1 21 36 0 0 chr3 6296434 6296462 -221228116 + AT_rich Low_complexity Low_complexity 1 28 0 206 139 28 0 chr3 6296993 6297029 -221227549 + (CAT)n Simple_repeat Simple_repeat 2 38 0 476 215 38 51 chr3 6298056 6298214 -221226364 + MER5C DNA MER1_type 169 324 0 423 283 72 17 chr3 6298454 6298634 -221225944 + L1MC4a LINE L1 5710 5899 -1909 828 132 60 18 chr3 6299148 6299315 -221225263 + L1MA8 LINE L1 6113 6286 -5 1695 173 125 48 chr3 6299677 6299908 -221224670 - MLT1C LTR MaLR -1 466 254 360 0 0 0 chr3 6299908 6299948 -221224630 + (TG)n Simple_repeat Simple_repeat 2 41 0 1695 173 125 48 chr3 6299948 6300149 -221224429 - MLT1C LTR MaLR -213 254 1 214 351 9 27 chr3 6300292 6300403 -221224175 - L2 LINE L2 -613 2701 2593 416 264 88 0 chr3 6300501 6300626 -221223952 - MIR SINE MIR -66 196 61 2044 188 14 3 chr3 6302784 6303145 -221221433 - MLT1A1 LTR MaLR 0 365 1 1653 191 13 3 chr3 6303208 6303512 -221221066 + AluJb SINE Alu 1 307 -5 327 49 0 0 chr3 6303516 6303557 -221221021 + (GGA)n Simple_repeat Simple_repeat 3 43 0 260 231 132 25 chr3 6304433 6304554 -221220024 + L1ME4a LINE L1 5986 6119 -2 21 36 0 0 chr3 6304955 6304983 -221219595 + AT_rich Low_complexity Low_complexity 1 28 0 27 29 0 0 chr3 6305280 6305314 -221219264 + AT_rich Low_complexity Low_complexity 1 34 0 929 172 84 0 chr3 6305998 6306201 -221218377 + Charlie1 DNA MER1_type 6 225 -2536 510 200 16 8 chr3 6306209 6306334 -221218244 + Charlie1 DNA MER1_type 2632 2757 -4 1795 203 120 0 chr3 6306404 6306822 -221217756 - MER119 DNA MER1_type -110 473 6 1802 111 0 24 chr3 6307630 6307883 -221216695 + AluSg SINE Alu 48 294 -16 297 262 171 37 chr3 6308388 6308552 -221216026 - MIR SINE MIR -70 192 7 190 253 191 43 chr3 6308637 6308799 -221215779 - L3b LINE CR1 -110 1473 1288 214 291 36 0 chr3 6308849 6308904 -221215674 + L2 LINE L2 3251 3307 -6 274 270 54 0 chr3 6309858 6309932 -221214646 - MER63 DNA MER1_type -5 1057 980 266 214 0 0 chr3 6309934 6309990 -221214588 - MER63 DNA MER1_type -311 750 695 334 303 40 59 chr3 6310037 6310189 -221214389 + MIR SINE MIR 104 252 -10 202 268 0 62 chr3 6310428 6310525 -221214053 + CT-rich Low_complexity Low_complexity 2 92 0 389 341 28 22 chr3 6313061 6313240 -221211338 + MIR SINE MIR 47 226 -36 453 216 20 0 chr3 6313254 6313356 -221211222 - MER3 DNA MER1_type -25 184 81 1273 181 3 100 chr3 6313357 6313677 -221210901 + AluJb SINE Alu 12 300 -12 2573 79 31 8 chr3 6315448 6315804 -221208774 - THE1B LTR MaLR 0 364 1 1250 212 24 44 chr3 6316478 6316775 -221207803 - AluJo SINE Alu -21 291 1 280 189 42 95 chr3 6318542 6318593 -221205985 + MIR SINE MIR 173 218 -44 1985 161 0 3 chr3 6318593 6318897 -221205681 + AluSx SINE Alu 1 303 -9 280 189 42 95 chr3 6318897 6318940 -221205638 + MIR SINE MIR 218 262 0 198 370 0 14 chr3 6318940 6319013 -221205565 - MIR SINE MIR -174 88 17 2304 157 0 42 chr3 6319055 6319489 -221205089 + MSTA LTR MaLR 1 416 -12 24 0 0 0 chr3 6320077 6320101 -221204477 + AT_rich Low_complexity Low_complexity 1 24 0 332 357 134 34 chr3 6320272 6321166 -221203412 - L2 LINE L2 -338 2976 1958 3598 117 43 23 chr3 6321166 6321764 -221202814 - MER4B LTR ERV1 0 610 1 332 357 134 34 chr3 6321764 6321926 -221202652 - L2 LINE L2 -1356 1958 1814 27 29 0 0 chr3 6322553 6322587 -221201991 + GC_rich Low_complexity Low_complexity 1 34 0 24 53 0 0 chr3 6322596 6322634 -221201944 + GC_rich Low_complexity Low_complexity 1 38 0 2377 55 7 0 chr3 6323218 6323510 -221201068 - AluSp SINE Alu -19 294 1 271 258 15 0 chr3 6323627 6323693 -221200885 + MIR SINE MIR 87 153 -109 4412 109 24 46 chr3 6323815 6324166 -221200412 - MER4E LTR ERV1 0 766 409 2142 118 7 0 chr3 6324166 6324455 -221200123 - AluSx SINE Alu -21 291 1 4412 109 24 46 chr3 6324455 6324886 -221199692 - MER4E LTR ERV1 -357 409 1 362 252 63 9 chr3 6325068 6325179 -221199399 - L2 LINE L2 0 3313 3197 28 0 0 0 chr3 6325345 6325373 -221199205 + AT_rich Low_complexity Low_complexity 1 28 0 1428 155 78 42 chr3 6326824 6327108 -221197470 + AluJo SINE Alu 1 294 -18 183 382 0 0 chr3 6327310 6327365 -221197213 - MIR SINE MIR -204 58 4 229 314 117 22 chr3 6327591 6327728 -221196850 - MIR SINE MIR -58 204 55 2704 125 82 31 chr3 6327894 6328479 -221196099 - MER4B LTR ERV1 0 779 1 627 257 82 44 chr3 6328530 6328849 -221195729 - MLT1K LTR MaLR 0 588 258 1617 165 43 25 chr3 6328937 6329264 -221195314 - MER7A DNA MER2_type -14 332 2 892 175 56 12 chr3 6331631 6331791 -221192787 + AluJb SINE Alu 134 300 -12 1136 230 143 31 chr3 6332931 6333379 -221191199 + MLT1J LTR MaLR 1 498 -13 372 121 0 0 chr3 6334030 6334088 -221190490 + L1MB8 LINE L1 6113 6170 -8 22 70 0 0 chr3 6334786 6334829 -221189749 + AT_rich Low_complexity Low_complexity 1 43 0 2266 132 0 0 chr3 6334834 6335138 -221189440 + AluSx SINE Alu 1 304 -8 9834 53 11 0 chr3 6335142 6336392 -221188186 + HSMAR1 DNA Mariner 24 1287 0 785 161 0 0 chr3 6336470 6336594 -221187984 + FLAM_C SINE Alu 1 124 -9 361 238 34 17 chr3 6336790 6336937 -221187641 + MIR SINE MIR 69 260 -2 372 284 20 0 chr3 6337063 6337165 -221187413 + Zaphod DNA AcHobo 12 115 -3916 1841 202 46 12 chr3 6337196 6337677 -221186901 + L1MC3 LINE L1 3657 4153 -1993 4414 168 66 16 chr3 6337678 6337695 -221186883 + L1MC3 LINE L1 5273 5288 -2497 1997 152 7 0 chr3 6337695 6337992 -221186586 + AluSx SINE Alu 1 299 -13 4414 168 66 16 chr3 6337992 6338321 -221186257 + L1MC3 LINE L1 5288 5599 -2186 1695 174 142 12 chr3 6338321 6338729 -221185849 - LOR1b LTR ERV1 0 461 1 4414 168 66 16 chr3 6338729 6339426 -221185152 + L1MC3 LINE L1 5599 6369 -1416 480 170 76 82 chr3 6339426 6339597 -221184981 - LTR48 LTR ERV1 -4 783 614 1479 187 132 46 chr3 6339626 6340065 -221184513 - LTR48 LTR ERV1 -310 477 1 5899 140 39 94 chr3 6340081 6341541 -221183037 + L1MC3 LINE L1 6380 7759 -26 896 174 6 45 chr3 6341575 6341753 -221182825 + FRAM SINE Alu 1 171 -5 782 192 53 70 chr3 6341753 6341948 -221182630 + L1M3 LINE L1 5481 5686 -485 259 149 0 21 chr3 6341948 6341995 -221182583 + Alu SINE Alu 245 290 -12 782 192 53 70 chr3 6341995 6342125 -221182453 + L1M3 LINE L1 5686 5817 -354 * 1932 171 49 63 chr3 6342118 6342626 -221181952 + L1MB7 LINE L1 5676 6176 -8 243 227 0 0 chr3 6342626 6342692 -221181886 + GA-rich Low_complexity Low_complexity 5 70 0 825 260 96 14 chr3 6342728 6343009 -221181569 + Zaphod DNA AcHobo 154 457 -3574 234 197 212 0 chr3 6343027 6343093 -221181485 + Zaphod DNA AcHobo 584 663 -3368 * 971 191 221 13 chr3 6343092 6343389 -221181189 + Zaphod DNA AcHobo 3282 3640 -391 927 197 25 142 chr3 6343389 6343916 -221180662 - MER4C LTR ERV1 0 465 1 2257 146 28 8 chr3 6343925 6344282 -221180296 - THE1B LTR MaLR 0 364 1 386 301 7 0 chr3 6344331 6344467 -221180111 - MER4C-int LTR ERV1 -79 6519 6383 262 237 30 69 chr3 6344464 6344595 -221179983 - MER4C-int LTR ERV1 -175 6423 6298 * 329 185 0 25 chr3 6344595 6344676 -221179902 + (TATG)n Simple_repeat Simple_repeat 4 82 0 207 0 0 0 chr3 6344678 6344701 -221179877 + (CA)n Simple_repeat Simple_repeat 2 24 0 8705 136 52 22 chr3 6344703 6344952 -221179626 - MER4C-int LTR ERV1 -491 5840 5600 1720 134 0 0 chr3 6344952 6345191 -221179387 - AluSx SINE Alu -73 239 1 8705 136 52 22 chr3 6345191 6345592 -221178986 - MER4C-int LTR ERV1 -731 5600 5212 1875 174 0 10 chr3 6345592 6345890 -221178688 - AluSx SINE Alu -17 295 1 8705 136 52 22 chr3 6345890 6347004 -221177574 - MER4C-int LTR ERV1 -1118 5213 4022 1409 213 7 23 chr3 6347017 6347318 -221177260 + AluJb SINE Alu 15 310 -2 25 0 0 0 chr3 6347320 6347345 -221177233 + AT_rich Low_complexity Low_complexity 1 25 0 3206 185 61 98 chr3 6347345 6347416 -221177162 - MER4C-int LTR ERV1 -1382 3498 3426 2151 127 71 3 chr3 6347416 6347756 -221176822 - THE1B LTR MaLR -1 363 1 11360 92 7 29 chr3 6347756 6349371 -221175207 - THE1B-int LTR MaLR 0 1580 1 2252 124 31 6 chr3 6349371 6349726 -221174852 - THE1B LTR MaLR 0 364 1 3206 185 61 98 chr3 6349726 6350615 -221173963 - MER4C-int LTR ERV1 -1452 3428 2409 2125 123 0 13 chr3 6350615 6350923 -221173655 + AluSx SINE Alu 1 304 -8 3206 185 61 98 chr3 6350923 6351480 -221173098 - MER4C-int LTR ERV1 -2471 2409 1833 240 222 69 14 chr3 6351622 6351694 -221172884 - MER34C LTR ERV1 -355 230 155 2238 161 34 8 chr3 6351780 6352472 -221172106 + LTR1B LTR ERV1 1 816 -10 840 182 0 155 chr3 6352480 6352776 -221171802 - MER4C-int LTR ERV1 -4143 3394 3145 1201 196 94 65 chr3 6352858 6352915 -221171663 - MER4C-int LTR ERV1 -4568 1763 1709 1548 219 7 3 chr3 6352915 6353207 -221171371 + AluJo SINE Alu 1 293 -19 1201 196 94 65 chr3 6353207 6353551 -221171027 - MER4C-int LTR ERV1 -4622 1709 1350 516 159 122 97 chr3 6353641 6353756 -221170822 - MER4C-int LTR ERV1 -4933 1398 1287 358 250 0 0 chr3 6353756 6353828 -221170750 - tRNA-Glu-GAG tRNA tRNA -1 74 3 516 159 122 97 chr3 6353828 6354023 -221170555 - MER4C-int LTR ERV1 -5044 1287 994 717 234 77 19 chr3 6354480 6354732 -221169846 - MER4C-int LTR ERV1 -6162 436 79 2124 113 0 55 chr3 6354732 6355059 -221169519 + AluSg SINE Alu 1 309 -1 717 234 77 19 chr3 6355059 6355143 -221169435 - MER4C-int LTR ERV1 -6519 79 1 1015 199 37 135 chr3 6355149 6355661 -221168917 - MER4C LTR ERV1 -3 462 1 1177 223 28 3 chr3 6355661 6355943 -221168635 + Zaphod DNA AcHobo 3637 3925 -106 459 155 0 0 chr3 6356253 6356337 -221168241 + CT-rich Low_complexity Low_complexity 1 84 0 749 189 6 89 chr3 6357187 6357367 -221167211 + FRAM SINE Alu 1 164 -12 241 317 0 12 chr3 6357950 6358032 -221166546 + L2 LINE L2 3134 3214 -58 860 276 85 39 chr3 6358377 6358787 -221165791 - LTR16A LTR ERVL -5 445 17 185 286 18 0 chr3 6358808 6358864 -221165714 - MER5A DNA MER1_type -6 183 127 1943 150 0 3 chr3 6358864 6359151 -221165427 + AluJb SINE Alu 1 286 -26 222 176 0 0 chr3 6359151 6359202 -221165376 + (CA)n Simple_repeat Simple_repeat 1 51 0 795 193 0 0 chr3 6359202 6359337 -221165241 - MER5A DNA MER1_type -53 136 2 576 331 48 51 chr3 6359464 6359899 -221164679 - L2 LINE L2 -504 2810 2377 2074 135 0 3 chr3 6361332 6361621 -221162957 + AluSx SINE Alu 1 288 -24 185 233 0 23 chr3 6362007 6362050 -221162528 - MIR SINE MIR -62 146 105 180 402 51 8 chr3 6362077 6362194 -221162384 + MER5A DNA MER1_type 49 170 -19 515 266 62 35 chr3 6362796 6363022 -221161556 + L1ME LINE L1 5547 5778 -343 1539 92 0 0 chr3 6363153 6363359 -221161219 + L1PA8A LINE L1 10 215 -5660 * 27940 128 12 13 chr3 6363356 6367665 -221156913 + L1PA8A LINE L1 1022 5362 -1084 2048 110 0 34 chr3 6367665 6367977 -221156601 + AluSp SINE Alu 1 302 0 27940 128 12 13 chr3 6367977 6369060 -221155518 + L1PA8A LINE L1 5362 6445 -1 1888 111 0 73 chr3 6369080 6369396 -221155182 - AluSg SINE Alu -9 301 9 306 169 0 0 chr3 6369400 6369465 -221155113 + (TG)n Simple_repeat Simple_repeat 2 66 0 23 0 0 0 chr3 6370246 6370269 -221154309 + AT_rich Low_complexity Low_complexity 1 23 0 613 226 0 0 chr3 6371009 6371124 -221153454 - MIR SINE MIR -136 126 12 272 290 102 62 chr3 6371283 6371459 -221153119 + MIR SINE MIR 56 238 -24 207 0 0 0 chr3 6371814 6371837 -221152741 + (A)n Simple_repeat Simple_repeat 1 23 0 305 311 48 0 chr3 6371931 6372034 -221152544 - L3b LINE CR1 -199 1384 1277 562 228 9 0 chr3 6372081 6372195 -221152383 - Charlie1 DNA MER1_type -1 2760 2646 657 212 8 8 chr3 6372202 6372320 -221152258 + FLAM_C SINE Alu 3 120 -23 2533 45 0 0 chr3 6372346 6372634 -221151944 - AluY SINE Alu -23 288 1 880 221 103 0 chr3 6372643 6372847 -221151731 - Charlie1 DNA MER1_type -2536 225 1 1641 179 43 13 chr3 6372935 6373237 -221151341 - AluJo SINE Alu -1 311 1 487 241 182 32 chr3 6373913 6374133 -221150445 - MIR SINE MIR -8 254 2 1765 170 0 23 chr3 6374151 6374457 -221150121 + AluJb SINE Alu 2 300 -12 537 273 23 102 chr3 6375717 6376021 -221148557 + Charlie8 DNA MER1_type 9 288 -2129 2158 99 3 0 chr3 6376660 6376990 -221147588 - AluSq SINE Alu 0 331 1 230 143 71 0 chr3 6377784 6377826 -221146752 + Tigger6b DNA MER2_type 818 862 -735 1836 144 0 47 chr3 6378372 6378575 -221146003 - AluJo SINE Alu -24 288 102 2372 103 71 8 chr3 6378575 6378926 -221145652 - THE1C LTR MaLR -2 373 1 1836 144 0 47 chr3 6378926 6379020 -221145558 - AluJo SINE Alu -210 102 5 207 69 0 0 chr3 6379281 6379310 -221145268 + (T)n Simple_repeat Simple_repeat 1 29 0 1988 151 6 22 chr3 6379407 6379718 -221144860 - AluSx SINE Alu -6 306 1 342 279 55 24 chr3 6380812 6380977 -221143601 - MIR3 SINE MIR -24 184 15 720 209 144 56 chr3 6381535 6381724 -221142854 + L1ME4a LINE L1 5667 5838 -283 1652 199 27 0 chr3 6381724 6382016 -221142562 + AluJo SINE Alu 1 300 -12 720 209 144 56 chr3 6382016 6382146 -221142432 + L1ME4a LINE L1 5838 6014 -107 33789 36 2 2 chr3 6382447 6386487 -221138091 - L1P LINE L1 -1633 4513 472 7124 36 0 0 chr3 6386482 6387734 -221136844 + L1P1 LINE L1 4554 5805 -350 * 23 0 0 0 chr3 6388131 6388154 -221136424 + AT_rich Low_complexity Low_complexity 1 23 0 781 253 21 11 chr3 6388730 6388916 -221135662 - MER5A DNA MER1_type 0 189 2 609 276 134 32 chr3 6388984 6389328 -221135250 - L2 LINE L2 -1 3312 2934 934 259 59 8 chr3 6390756 6390992 -221133586 - MIR SINE MIR 0 262 15 2070 122 25 0 chr3 6391109 6391395 -221133183 + AluSx SINE Alu 1 293 -19 21 95 0 0 chr3 6391450 6391513 -221133065 + AT_rich Low_complexity Low_complexity 1 63 0 786 274 34 1 chr3 6391646 6391865 -221132713 - MIR SINE MIR -6 256 30 859 219 72 0 chr3 6392153 6392432 -221132146 + L1MEc LINE L1 2020 2318 -4078 479 256 0 0 chr3 6392411 6392532 -221132046 + L1MEc LINE L1 3433 3553 -2662 * 525 217 19 9 chr3 6392535 6392641 -221131937 + AluJo SINE Alu 116 222 -90 2806 224 54 15 chr3 6392667 6393448 -221131130 + L1MEc LINE L1 3584 4394 -1821 1611 157 102 4 chr3 6393963 6394237 -221130341 + AluJo SINE Alu 1 301 -11 782 199 34 28 chr3 6394418 6394594 -221129984 + MER5B DNA MER1_type 2 178 0 211 333 121 0 chr3 6395537 6395702 -221128876 + L2 LINE L2 2864 3048 -224 1912 149 0 17 chr3 6395883 6396178 -221128400 - AluJo SINE Alu -22 290 1 711 153 0 8 chr3 6396280 6396398 -221128180 - L1ME1 LINE L1 -5 6161 6045 319 194 124 5 chr3 6396435 6396578 -221128000 - MIR SINE MIR -27 235 13 2298 154 3 16 chr3 6397129 6397500 -221127078 - MER47A DNA MER2_type 0 366 1 1317 219 108 23 chr3 6398259 6398648 -221125930 + MLT1C LTR MaLR 1 422 -45 1826 102 31 0 chr3 6398687 6398942 -221125636 + AluSc SINE Alu 42 304 -5 230 132 26 0 chr3 6398951 6398989 -221125589 + MLT1B LTR MaLR 352 390 0 2871 139 7 16 chr3 6399231 6399671 -221124907 + L1PA15 LINE L1 5728 6163 -2 2378 84 7 0 chr3 6400262 6400571 -221124007 + L1PB1 LINE L1 5841 6151 0 606 230 57 63 chr3 6400687 6400839 -221123739 + L1MC5 LINE L1 7027 7178 -801 1826 153 0 14 chr3 6400839 6401126 -221123452 + AluJb SINE Alu 1 283 -29 183 42 0 0 chr3 6401129 6401153 -221123425 + (CAAA)n Simple_repeat Simple_repeat 2 25 0 606 230 57 63 chr3 6401153 6401223 -221123355 + L1MC5 LINE L1 7180 7251 -728 285 98 0 0 chr3 6401392 6401433 -221123145 + (CA)n Simple_repeat Simple_repeat 2 42 0 425 217 43 122 chr3 6401442 6401583 -221122995 + L1MC5 LINE L1 7310 7460 -501 4795 68 0 3 chr3 6401583 6402161 -221122417 + L1PA7 LINE L1 5579 6154 0 425 217 43 122 chr3 6402161 6402173 -221122405 + L1MC5 LINE L1 7460 7471 -490 2227 129 0 0 chr3 6402173 6402484 -221122094 + AluSx SINE Alu 1 311 -1 425 217 43 122 chr3 6402484 6402559 -221122019 + L1MC5 LINE L1 7471 7521 -440 1520 213 216 17 chr3 6402587 6402995 -221121583 + LTR40a LTR ERVL 31 519 0 336 254 71 61 chr3 6403033 6403328 -221121250 - L1MCa LINE L1 -4387 1995 1698 * 9888 210 48 22 chr3 6403324 6403950 -221120628 - L1MD1 LINE L1 -1 6635 6027 2175 125 0 0 chr3 6403950 6404262 -221120316 - AluSx SINE Alu 0 312 1 9888 210 48 22 chr3 6404262 6409672 -221114906 - L1MD1 LINE L1 -609 6027 202 1440 171 0 0 chr3 6409677 6409894 -221114684 - AluJb SINE Alu -30 282 66 603 259 63 0 chr3 6409900 6410043 -221114535 - L1MD1 LINE L1 -6358 182 31 1680 235 66 84 chr3 6410072 6410542 -221114036 - L1MCa LINE L1 -4727 1657 1180 1718 183 3 25 chr3 6410542 6410859 -221113719 - AluJb SINE Alu -2 310 1 1680 235 66 84 chr3 6410859 6410893 -221113685 - L1MCa LINE L1 -5204 1180 1147 1851 183 3 3 chr3 6410893 6411204 -221113374 - AluJb SINE Alu -1 311 1 1680 235 66 84 chr3 6411204 6411607 -221112971 - L1MCa LINE L1 -5237 1147 765 227 64 0 43 chr3 6411685 6411732 -221112846 + LTR66 LTR ERVL 394 438 -172 180 77 0 0 chr3 6411733 6411759 -221112819 + (GA)n Simple_repeat Simple_repeat 2 27 0 249 33 0 0 chr3 6411808 6411838 -221112740 + (TTTTG)n Simple_repeat Simple_repeat 1 30 0 1685 191 3 3 chr3 6412410 6412709 -221111869 - AluJo SINE Alu -13 299 1 198 0 0 0 chr3 6412710 6412732 -221111846 + (TTTA)n Simple_repeat Simple_repeat 3 24 0 22 0 0 0 chr3 6412732 6412754 -221111824 + AT_rich Low_complexity Low_complexity 1 22 0 475 188 11 152 chr3 6413035 6413248 -221111330 + L1MC5 LINE L1 7545 7712 -249 1715 168 45 3 chr3 6413248 6413534 -221111044 - AluJb SINE Alu -14 298 1 475 188 11 152 chr3 6413534 6413597 -221110981 + L1MC5 LINE L1 7712 7782 -179 829 223 13 12 chr3 6413640 6413942 -221110636 + MLT2F LTR ERVL 8 376 -287 560 273 0 27 chr3 6414119 6414269 -221110309 - MIR SINE MIR -64 198 53 421 217 22 0 chr3 6415071 6415163 -221109415 + MER94 DNA DNA 10 103 -31 483 282 25 0 chr3 6415175 6415316 -221109262 - MIR SINE MIR -62 146 2 872 269 49 4 chr3 6416967 6417212 -221107366 - MIR SINE MIR -4 258 3 266 304 128 20 chr3 6417295 6417397 -221107181 + L2 LINE L2 3155 3267 -5 24 0 0 0 chr3 6417705 6417729 -221106849 + AT_rich Low_complexity Low_complexity 1 24 0 1895 143 61 3 chr3 6418822 6419115 -221105463 - AluSg SINE Alu 0 310 1 375 282 172 6 chr3 6419705 6419879 -221104699 - MIR SINE MIR -12 250 48 5246 56 0 0 chr3 6419894 6420501 -221104077 - L1PA6 LINE L1 -3 6151 5545 238 339 85 23 chr3 6420653 6420783 -221103795 - MIR3 SINE MIR -69 139 2 200 303 100 74 chr3 6421363 6421634 -221102944 + L2 LINE L2 2985 3262 -10 496 290 129 28 chr3 6421638 6421886 -221102692 + L3 LINE CR1 605 877 -700 209 312 64 9 chr3 6421944 6422053 -221102525 + L3 LINE CR1 842 956 -621 552 283 46 32 chr3 6422163 6422382 -221102196 - MIR SINE MIR -27 235 14 817 329 62 48 chr3 6422418 6422920 -221101658 + L3 LINE CR1 1019 1527 -50 2124 105 3 24 chr3 6423554 6423870 -221100708 + AluSp SINE Alu 1 310 0 194 227 0 23 chr3 6423925 6423969 -221100609 + L2 LINE L2 3262 3304 -9 1966 156 0 3 chr3 6424463 6424765 -221099813 - AluJb SINE Alu -10 302 2 2109 130 0 13 chr3 6425452 6425767 -221098811 + AluSx SINE Alu 1 311 -1 252 0 0 0 chr3 6426164 6426192 -221098386 + (CA)n Simple_repeat Simple_repeat 2 29 0 393 282 87 28 chr3 6427047 6427299 -221097279 + L1MCc LINE L1 1177 1443 -4980 225 333 0 0 chr3 6427309 6427390 -221097188 + L1ME LINE L1 5428 5508 -851 832 176 0 0 chr3 6427624 6427755 -221096823 + FLAM_C SINE Alu 1 131 -12 2043 110 36 7 chr3 6427767 6428068 -221096510 + AluSx SINE Alu 1 310 -2 492 310 123 0 chr3 6428098 6428285 -221096293 - L2 LINE L2 -541 2773 2564 21 57 0 0 chr3 6430898 6430933 -221093645 + AT_rich Low_complexity Low_complexity 1 35 0 2021 122 3 20 chr3 6431680 6431984 -221092594 + AluSx SINE Alu 1 299 -13 1784 183 0 3 chr3 6432092 6432382 -221092196 - AluJb SINE Alu -21 291 3 322 219 73 0 chr3 6432402 6432484 -221092094 + MIR SINE MIR 86 173 -89 1677 175 0 45 chr3 6432822 6432951 -221091627 + AluJo SINE Alu 1 134 -178 2091 127 0 3 chr3 6432951 6433243 -221091335 - AluSx SINE Alu -21 291 1 1677 175 0 45 chr3 6433243 6433421 -221091157 + AluJo SINE Alu 134 294 -18 1964 136 58 0 chr3 6434040 6434335 -221090243 + AluSx SINE Alu 1 312 0 330 299 49 37 chr3 6434444 6434608 -221089970 + L1ME LINE L1 5502 5667 -454 2132 130 0 0 chr3 6434609 6434920 -221089658 + AluSx SINE Alu 1 311 0 764 188 79 50 chr3 6434938 6435140 -221089438 + MLT1A1 LTR MaLR 157 364 -1 393 275 126 60 chr3 6435228 6435592 -221088986 + L1ME4a LINE L1 5557 5944 -177 1108 223 20 12 chr3 6435619 6435866 -221088712 + MIR SINE MIR 14 262 0 428 260 82 7 chr3 6435876 6436022 -221088556 + L1ME4a LINE L1 5960 6116 -5 26 0 0 0 chr3 6436436 6436462 -221088116 + AT_rich Low_complexity Low_complexity 1 26 0 491 271 100 24 chr3 6437580 6437831 -221086747 + LTR16A LTR ERVL 180 449 -1 321 170 0 0 chr3 6438076 6438129 -221086449 - L2 LINE L2 0 3272 3220 2281 87 0 3 chr3 6439476 6439774 -221084804 - AluY SINE Alu -14 297 1 323 269 81 44 chr3 6439964 6440151 -221084427 + MIR SINE MIR 40 229 -33 619 271 57 38 chr3 6440221 6440431 -221084147 + MIR SINE MIR 15 228 -34 1843 146 0 17 chr3 6440568 6440863 -221083715 - AluJb SINE Alu -22 290 1 26 0 0 0 chr3 6441445 6441471 -221083107 + AT_rich Low_complexity Low_complexity 1 26 0 881 229 47 74 chr3 6441492 6441787 -221082791 - L1MC3 LINE L1 -390 5780 5589 31 26 0 0 chr3 6441846 6441884 -221082694 + AT_rich Low_complexity Low_complexity 1 38 0 1994 86 67 0 chr3 6441885 6442153 -221082425 - L1PB1 LINE L1 -2 6149 5864 1888 92 62 0 chr3 6442153 6442358 -221082220 + L1PB1 LINE L1 5573 5801 -350 333 0 0 0 chr3 6442358 6442395 -221082183 + (CA)n Simple_repeat Simple_repeat 2 38 0 1888 92 62 0 chr3 6442395 6442462 -221082116 + L1PB1 LINE L1 5801 5862 -289 215 205 0 0 chr3 6442590 6442629 -221081949 - L2 LINE L2 -13 3300 3262 22 70 0 0 chr3 6442694 6442737 -221081841 + AT_rich Low_complexity Low_complexity 1 43 0 2446 150 43 26 chr3 6442737 6443156 -221081422 + MSTB LTR MaLR 1 426 0 1071 180 15 40 chr3 6443959 6444159 -221080419 - MER20 DNA MER1_type 0 219 25 973 260 4 13 chr3 6444229 6444460 -221080118 + MIR SINE MIR 7 235 -27 2450 94 10 104 chr3 6444800 6445202 -221079376 - THE1B LTR MaLR 0 364 1 366 268 85 68 chr3 6447193 6447438 -221077140 + L1ME4a LINE L1 5808 6060 -61 1935 163 0 0 chr3 6447438 6447732 -221076846 - AluJo SINE Alu -18 294 1 366 268 85 68 chr3 6447732 6447781 -221076797 + L1ME4a LINE L1 6060 6107 -14 403 253 103 79 chr3 6447989 6448242 -221076336 - L1ME4a LINE L1 -239 5882 5624 305 319 166 25 chr3 6449059 6449222 -221075356 - MIR3 SINE MIR -15 193 8 306 252 72 9 chr3 6449308 6449419 -221075159 + MER103 DNA DNA 18 135 -31 421 261 6 85 chr3 6449419 6449584 -221074994 + MIR SINE MIR 33 184 -78 251 246 15 0 chr3 6449677 6449742 -221074836 - L2 LINE L2 -7 3306 3241 183 420 37 0 chr3 6450047 6450128 -221074450 - L3 LINE CR1 -10 1567 1484 2593 201 14 20 chr3 6450199 6450839 -221073739 + LTR27 LTR ERV1 3 696 -134 229 220 102 17 chr3 6450830 6450889 -221073689 + LTR27 LTR ERV1 570 633 -3 * 375 244 37 0 chr3 6450896 6450978 -221073600 - MER94 DNA DNA -49 85 1 445 331 103 29 chr3 6450981 6451262 -221073316 - L3 LINE CR1 -95 1482 1181 296 254 328 53 chr3 6451270 6451663 -221072915 + L2 LINE L2 2400 2900 -414 * 484 294 70 56 chr3 6451661 6451947 -221072631 + L2 LINE L2 3008 3297 -16 2009 150 72 0 chr3 6453041 6453374 -221071204 + L1MB4 LINE L1 5816 6172 -8 309 311 10 19 chr3 6453633 6453736 -221070842 - MIR SINE MIR -12 250 149 1827 226 79 45 chr3 6453914 6454004 -221070574 + L1MDa LINE L1 669 755 -5374 2151 110 3 10 chr3 6454004 6454303 -221070275 - AluSx SINE Alu -13 299 3 1827 226 79 45 chr3 6454303 6455065 -221069513 + L1MDa LINE L1 755 1708 -4421 848 153 0 29 chr3 6455079 6455216 -221069362 + AluJb SINE Alu 2 134 -178 327 200 130 52 chr3 6455225 6455495 -221069083 + L1MDa LINE L1 1718 2008 -4121 427 231 30 60 chr3 6455526 6455660 -221068918 + L1MDa LINE L1 1063 1192 -4927 239 211 42 0 chr3 6455681 6455752 -221068826 + L1MEd LINE L1 2848 2921 -3208 391 248 97 52 chr3 6455789 6456157 -221068421 + L1MDa LINE L1 1231 1667 -823 503 251 71 51 chr3 6456491 6456734 -221067844 + L1MDa LINE L1 1997 2257 -3872 2239 123 7 0 chr3 6456734 6457044 -221067534 + AluSx SINE Alu 1 312 0 503 251 71 51 chr3 6457044 6457210 -221067368 + L1MDa LINE L1 2257 2418 -3711 21 100 0 0 chr3 6457221 6457291 -221067287 + AT_rich Low_complexity Low_complexity 1 70 0 1501 180 0 42 chr3 6457367 6457673 -221066905 + MER31B LTR ERV1 1 293 -173 895 300 84 18 chr3 6457675 6458305 -221066273 + L1MDa LINE L1 2409 3080 -3049 231 294 58 19 chr3 6458305 6458317 -221066261 - MIR SINE MIR -86 122 112 1908 135 0 10 chr3 6458317 6458613 -221065965 + AluJo SINE Alu 1 293 -19 231 294 58 19 chr3 6458613 6458699 -221065879 - MIR SINE MIR -96 112 22 603 183 87 32 chr3 6458803 6458929 -221065649 - FLAM_C SINE Alu 0 133 1 2397 73 0 29 chr3 6459028 6459341 -221065237 + AluSq SINE Alu 1 304 -9 3743 139 2 13 chr3 6460091 6460624 -221063954 + MER1A DNA MER1_type 1 527 0 2255 19 0 15 chr3 6461334 6461595 -221062983 - AluY SINE Alu -14 297 41 251 300 14 0 chr3 6461702 6461772 -221062806 + GA-rich Low_complexity Low_complexity 2 72 0 1909 141 3 16 chr3 6462070 6462374 -221062204 + AluSx SINE Alu 1 300 -12 681 320 47 36 chr3 6462475 6462558 -221062020 + HAL1b LINE L1 1 82 -1266 1817 173 3 6 chr3 6462558 6462871 -221061707 + AluJo SINE Alu 1 312 0 681 320 47 36 chr3 6462871 6463403 -221061175 + HAL1b LINE L1 82 623 -725 575 258 101 69 chr3 6463647 6464128 -221060450 + L1MC5 LINE L1 5975 6774 -1034 409 255 50 28 chr3 6464088 6464229 -221060349 + L1MB8 LINE L1 5975 6118 -60 * 353 183 37 0 chr3 6464256 6464338 -221060240 + L1MB7 LINE L1 6090 6174 -10 1781 165 0 38 chr3 6464405 6464721 -221059857 - AluJo SINE Alu -8 304 1 1792 191 55 92 chr3 6464721 6464769 -221059809 + L1MC5 LINE L1 6928 6976 -985 1367 192 7 19 chr3 6464769 6465040 -221059538 + L1MD2 LINE L1 6090 6357 -2 1792 191 55 92 chr3 6465040 6465231 -221059347 + L1MC5 LINE L1 6976 7173 -788 2774 110 6 3 chr3 6465231 6465594 -221058984 + THE1B LTR MaLR 1 364 0 1792 191 55 92 chr3 6465594 6465976 -221058602 + L1MC5 LINE L1 7173 7527 -434 503 250 28 65 chr3 6466062 6466278 -221058300 + L1ME3A LINE L1 5963 6170 0 755 208 95 41 chr3 6466301 6466595 -221057983 + MER113 DNA MER1_type? 175 484 -37 431 325 16 26 chr3 6469142 6469333 -221055245 - MER5A DNA MER1_type 0 189 1 775 333 71 50 chr3 6469588 6470026 -221054552 - L2 LINE L2 0 3272 2826 1691 204 109 12 chr3 6470071 6470149 -221054429 - Charlie4a DNA MER1_type -1458 503 434 205 27 81 0 chr3 6470149 6470186 -221054392 + A-rich Low_complexity Low_complexity 5 44 0 1691 204 109 12 chr3 6470186 6470498 -221054080 - Charlie4a DNA MER1_type -1527 434 65 628 89 0 0 chr3 6470498 6470577 -221054001 - MADE1 DNA Mariner 0 80 2 1691 204 109 12 chr3 6470577 6470617 -221053961 - Charlie4a DNA MER1_type -1896 65 30 2256 78 17 0 chr3 6470764 6471059 -221053519 - AluY SINE Alu -11 300 1 731 245 92 40 chr3 6471642 6471891 -221052687 + MIR SINE MIR 1 262 0 1533 174 41 27 chr3 6472447 6472610 -221051968 - AluJb SINE Alu -15 297 127 2461 70 0 3 chr3 6472610 6472910 -221051668 - AluSx SINE Alu -13 299 1 1533 174 41 27 chr3 6472910 6473039 -221051539 - AluJb SINE Alu -185 127 1 1249 293 57 14 chr3 6473334 6473928 -221050650 + L1PA4 LINE L1 5306 5925 -230 * 4657 148 26 1 chr3 6473408 6474163 -221050415 + L1MB7 LINE L1 5391 6164 -20 4572 177 22 10 chr3 6474321 6474510 -221050068 + L1 LINE L1 3317 3502 -2644 2170 106 0 3 chr3 6474510 6474818 -221049760 + AluSx SINE Alu 1 307 0 4572 177 22 10 chr3 6474818 6475521 -221049057 + L1 LINE L1 3502 4221 -1925 1363 97 0 0 chr3 6475521 6475696 -221048882 - AluY SINE Alu -5 306 132 402 147 0 0 chr3 6475696 6475764 -221048814 + (TA)n Simple_repeat Simple_repeat 2 69 0 225 103 0 0 chr3 6475764 6475803 -221048775 + LTR66 LTR ERVL 398 436 -174 231 333 0 0 chr3 6475826 6475916 -221048662 - L1MC4 LINE L1 -1339 6703 6614 * 241 269 0 43 chr3 6475839 6475932 -221048646 + L1MC4 LINE L1 6615 6703 -1339 659 209 9 8 chr3 6475933 6476170 -221048408 + (TATATG)n Simple_repeat Simple_repeat 1 237 0 975 112 0 0 chr3 6476193 6476318 -221048260 - AluSq/x SINE Alu -188 125 1 335 155 0 0 chr3 6476318 6476376 -221048202 + L1MA7 LINE L1 4326 4383 -1763 5828 136 28 18 chr3 6476419 6477650 -221046928 + L1MA7 LINE L1 4585 5836 -455 2349 79 0 3 chr3 6477650 6477954 -221046624 + AluY SINE Alu 1 303 -8 5828 136 28 18 chr3 6477954 6478415 -221046163 + L1MA7 LINE L1 5836 6291 0 517 248 17 102 chr3 6478989 6479286 -221045292 + L1MC4a LINE L1 5707 5822 -332 294 50 0 0 chr3 6479676 6479716 -221044862 + (TG)n Simple_repeat Simple_repeat 2 41 0 240 35 0 0 chr3 6479715 6479744 -221044834 + (TA)n Simple_repeat Simple_repeat 2 30 0 * 1464 184 14 14 chr3 6479744 6480027 -221044551 - AluJo SINE Alu -25 287 5 343 325 71 0 chr3 6480049 6480175 -221044403 + L2 LINE L2 3177 3311 -2 719 279 190 52 chr3 6481142 6481658 -221042920 + MLT1K LTR MaLR 2 588 0 23 0 0 0 chr3 6481769 6481792 -221042786 + AT_rich Low_complexity Low_complexity 1 23 0 297 253 96 12 chr3 6481973 6482056 -221042522 + MIR SINE MIR 98 187 -75 2239 85 0 4 chr3 6482286 6482591 -221041987 + AluSc SINE Alu 1 304 0 294 50 0 0 chr3 6483469 6483509 -221041069 + (TG)n Simple_repeat Simple_repeat 1 40 0 231 266 73 97 chr3 6483525 6483649 -221040929 + L2 LINE L2 3188 3308 -5 2278 109 0 13 chr3 6484271 6484583 -221039995 + AluSc SINE Alu 1 308 -1 199 255 0 21 chr3 6485072 6485119 -221039459 + MIR SINE MIR 19 64 -144 2550 42 0 7 chr3 6485182 6485488 -221039090 - AluSg SINE Alu -6 304 1 346 200 32 42 chr3 6486557 6486652 -221037926 - MIR SINE MIR 0 262 169 1105 82 0 7 chr3 6486659 6486806 -221037772 + AluSc SINE Alu 150 295 -14 506 219 0 0 chr3 6486811 6486907 -221037671 + MER5A DNA MER1_type 94 189 0 444 228 28 108 chr3 6486947 6486994 -221037584 + L1MC5 LINE L1 7476 7525 -436 2520 46 3 3 chr3 6486994 6487297 -221037281 + AluY SINE Alu 1 303 -8 444 228 28 108 chr3 6487297 6487499 -221037079 + L1MC5 LINE L1 7525 7705 -256 246 143 0 0 chr3 6487511 6487560 -221037018 + (CA)n Simple_repeat Simple_repeat 2 50 0 493 255 78 21 chr3 6487563 6487755 -221036823 + L1MC5 LINE L1 7731 7933 -28 1876 155 0 3 chr3 6487755 6488052 -221036526 + AluJo SINE Alu 1 296 -16 205 336 95 0 chr3 6488086 6488202 -221036376 - MIR SINE MIR -48 214 88 293 342 63 0 chr3 6488347 6488458 -221036120 + L2 LINE L2 3147 3264 -8 447 297 36 26 chr3 6488573 6488765 -221035813 + MIR SINE MIR 69 262 0 400 271 57 8 chr3 6489092 6489214 -221035364 - L2 LINE L2 -379 2934 2807 197 265 235 0 chr3 6489217 6489319 -221035259 - L2 LINE L2 -469 2845 2720 1249 306 55 26 chr3 6489362 6489943 -221034635 - HERV16 LTR ERVL -743 5021 4424 1187 117 42 124 chr3 6489955 6490143 -221034435 - L1M4 LINE L1 -408 5770 5611 1503 169 43 32 chr3 6490143 6490421 -221034157 - AluJb SINE Alu -31 281 1 1187 117 42 124 chr3 6490421 6490515 -221034063 - L1M4 LINE L1 -567 5611 5511 1419 298 72 50 chr3 6490533 6491251 -221033327 - HERV16 LTR ERVL -4136 860 127 227 288 0 0 chr3 6491367 6491426 -221033152 - LTR16B LTR ERVL 0 464 406 430 169 26 0 chr3 6491459 6491536 -221033042 + FLAM_C SINE Alu 65 143 0 426 204 0 0 chr3 6491540 6491633 -221032945 + A-rich Low_complexity Low_complexity 1 93 0 519 358 33 25 chr3 6491660 6492023 -221032555 - LTR16B LTR ERVL -65 399 34 1353 276 117 15 chr3 6492086 6492549 -221032029 + L2 LINE L2 2804 3313 0 501 221 8 33 chr3 6492769 6492891 -221031687 - L2 LINE L2 0 3313 3195 201 276 53 0 chr3 6492888 6492964 -221031614 + MIR SINE MIR 183 262 0 * 21 0 0 0 chr3 6493010 6493031 -221031547 + AT_rich Low_complexity Low_complexity 1 21 0 2589 45 3 0 chr3 6493274 6493584 -221030994 - AluY SINE Alu 0 311 1 578 223 159 19 chr3 6494224 6494381 -221030197 - MER5A DNA MER1_type -10 179 1 2041 183 21 50 chr3 6495582 6496047 -221028531 + MLT1D LTR MaLR 54 505 0 622 212 18 0 chr3 6496566 6496679 -221027899 - MER5A DNA MER1_type -3 186 72 524 186 0 21 chr3 6496679 6496776 -221027802 - AluJo SINE Alu -1 311 217 808 175 0 42 chr3 6496777 6496920 -221027658 - AluJo SINE Alu -167 145 9 407 190 0 25 chr3 6496923 6497002 -221027576 - MER5A DNA MER1_type -109 80 4 491 296 87 6 chr3 6497034 6497206 -221027372 + MIR SINE MIR 61 246 -16 24 0 0 0 chr3 6497986 6498010 -221026568 + AT_rich Low_complexity Low_complexity 1 24 0 1855 95 4 58 chr3 6498016 6498290 -221026288 + AluSx SINE Alu 1 259 -53 255 103 0 0 chr3 6498303 6498342 -221026236 + (TGAA)n Simple_repeat Simple_repeat 3 41 0 248 282 137 30 chr3 6498415 6498546 -221026032 + MIR3 SINE MIR 16 160 -48 571 261 69 42 chr3 6498713 6498931 -221025647 - MIR SINE MIR 0 262 29 1310 158 5 23 chr3 6499392 6499613 -221024965 + AluJo SINE Alu 64 280 -32 306 0 0 0 chr3 6499613 6499647 -221024931 + (TAA)n Simple_repeat Simple_repeat 2 35 0 184 247 398 11 chr3 6499707 6499800 -221024778 - MIR SINE MIR -85 177 49 2794 130 28 77 chr3 6499810 6499842 -221024736 - L1MB8 LINE L1 0 6178 6146 1256 188 96 11 chr3 6499842 6500113 -221024465 + AluJo SINE Alu 1 294 -18 2794 130 28 77 chr3 6500113 6500411 -221024167 - L1MB8 LINE L1 -32 6146 5885 2263 63 40 27 chr3 6500411 6500712 -221023866 - AluSq SINE Alu -8 305 1 2794 130 28 77 chr3 6500712 6500955 -221023623 - L1MB8 LINE L1 -293 5885 5632 2007 151 13 0 chr3 6501061 6501360 -221023218 - AluJb SINE Alu -9 303 1 21 36 0 0 chr3 6501406 6501434 -221023144 + AT_rich Low_complexity Low_complexity 1 28 0 201 303 34 22 chr3 6501516 6501605 -221022973 - L2 LINE L2 -5 3308 3219 2209 111 0 3 chr3 6501875 6502182 -221022396 - AluSx SINE Alu -6 306 1 556 114 13 0 chr3 6502596 6502675 -221021903 - MADE1 DNA Mariner 0 80 1 2197 134 0 0 chr3 6502741 6503048 -221021530 - AluSx SINE Alu -5 307 1 970 191 182 22 chr3 6503128 6503353 -221021225 - AluJo SINE Alu -23 289 29 1840 153 0 4 chr3 6503541 6503838 -221020740 - AluSx SINE Alu 0 304 9 204 158 0 0 chr3 6503947 6503985 -221020593 + C-rich Low_complexity Low_complexity 1 38 0 1762 117 62 22 chr3 6503985 6504258 -221020320 - AluSx SINE Alu -17 295 12 207 100 0 0 chr3 6504337 6504367 -221020211 + (TCC)n Simple_repeat Simple_repeat 3 32 0 1921 139 3 3 chr3 6505325 6505613 -221018965 - AluSx SINE Alu -24 288 1 1140 123 0 0 chr3 6505980 6506135 -221018443 - AluSg/x SINE Alu -16 296 142 1602 249 83 54 chr3 6506142 6506395 -221018183 - L1MC4 LINE L1 -160 7882 7638 712 154 24 0 chr3 6506395 6506518 -221018060 - L1MA6 LINE L1 0 6300 6175 1602 249 83 54 chr3 6506518 6506926 -221017652 - L1MC4 LINE L1 -404 7638 7194 1989 155 0 3 chr3 6506926 6507230 -221017348 - AluJb SINE Alu -9 303 1 1602 249 83 54 chr3 6507230 6507326 -221017252 - L1MC4 LINE L1 -848 7194 7102 1045 73 66 20 chr3 6508533 6508684 -221015894 - L1MA1 LINE L1 0 6302 6145 1212 183 121 0 chr3 6509307 6509596 -221014982 - MER33 DNA MER1_type 0 324 1 362 244 139 45 chr3 6510578 6510786 -221013792 + MIR SINE MIR 20 261 -1 199 185 37 19 chr3 6510925 6510979 -221013599 - MIR SINE MIR -72 136 82 280 293 19 9 chr3 6511070 6511176 -221013402 + MIR SINE MIR 56 162 -100 198 103 0 0 chr3 6511251 6511280 -221013298 + (TTA)n Simple_repeat Simple_repeat 3 31 0 253 203 188 0 chr3 6511331 6511400 -221013178 + L2 LINE L2 3187 3268 -4 226 96 19 19 chr3 6512477 6512529 -221012049 + (GGA)n Simple_repeat Simple_repeat 1 52 0 245 280 86 0 chr3 6514788 6514881 -221009697 - MIR SINE MIR -125 137 37 1009 255 99 49 chr3 6516427 6516633 -221007945 - L2 LINE L2 0 3313 3119 3635 154 54 6 chr3 6516633 6517302 -221007276 + L1MB3 LINE L1 5481 6181 -2 1009 255 99 49 chr3 6517302 6517581 -221006997 - L2 LINE L2 -194 3119 2804 664 211 113 14 chr3 6518095 6518237 -221006341 + FAM SINE Alu 11 166 -19 21 82 0 0 chr3 6518557 6518606 -221005972 + AT_rich Low_complexity Low_complexity 1 49 0 708 221 129 40 chr3 6518606 6518878 -221005700 - L1MC5 LINE L1 -353 7608 7313 565 177 0 35 chr3 6518878 6518991 -221005587 - FLAM_A SINE Alu -12 130 22 228 237 17 0 chr3 6519035 6519094 -221005484 - L1MC5 LINE L1 -713 7248 7189 825 188 38 42 chr3 6519112 6519273 -221005305 - L1MC5 LINE L1 -1079 6882 6721 1709 193 0 7 chr3 6519273 6519578 -221005000 - AluJo SINE Alu -9 303 1 825 188 38 42 chr3 6519578 6519629 -221004949 - L1MC5 LINE L1 -1240 6721 6671 313 250 95 87 chr3 6519862 6519929 -221004649 - MER112 DNA MER1_type -2 254 189 1664 176 10 33 chr3 6519929 6520236 -221004342 - AluJo SINE Alu -12 300 1 313 250 95 87 chr3 6520236 6520420 -221004158 - MER112 DNA MER1_type -67 189 1 441 245 0 10 chr3 6520436 6520538 -221004040 + MER5A DNA MER1_type 9 109 -80 2305 99 0 0 chr3 6521521 6521813 -221002765 - AluSc SINE Alu -17 292 1 2210 114 0 13 chr3 6521874 6522181 -221002397 + AluSx SINE Alu 1 303 -9 240 197 45 45 chr3 6522449 6522515 -221002063 + MIR SINE MIR 112 177 -85 586 152 101 177 chr3 6522596 6522833 -221001745 + MER20 DNA MER1_type 1 219 0 264 329 71 14 chr3 6523017 6523157 -221001421 + MIR3 SINE MIR 21 168 -40 2114 137 3 0 chr3 6524269 6524568 -221000010 - AluSx SINE Alu -12 300 1 341 231 44 0 chr3 6525146 6525237 -220999341 - MIR SINE MIR -72 190 96 887 290 78 38 chr3 6525239 6525760 -220998818 + L2 LINE L2 2748 3296 -17 1764 194 61 33 chr3 6525935 6526393 -220998185 - Charlie1b DNA MER1_type 0 523 53 189 0 0 0 chr3 6527530 6527551 -220997027 + (T)n Simple_repeat Simple_repeat 1 21 0 576 314 8 47 chr3 6528159 6528392 -220996186 - MIR SINE MIR -35 227 5 1803 163 3 20 chr3 6528589 6528883 -220995695 + AluJb SINE Alu 6 294 -18 734 287 129 39 chr3 6528929 6529626 -220994952 - L2 LINE L2 -7 3265 2494 473 289 29 95 chr3 6529633 6530013 -220994565 - L2 LINE L2 0 3272 2918 686 326 9 0 chr3 6530630 6530857 -220993721 - MIR SINE MIR -24 238 10 1237 188 111 30 chr3 6531067 6531338 -220993240 - AluJo SINE Alu -17 295 3 247 303 26 0 chr3 6531424 6531500 -220993078 + L3 LINE CR1 1499 1576 -1 356 278 90 0 chr3 6531751 6531895 -220992683 - MIR SINE MIR 0 262 106 248 222 96 44 chr3 6532691 6532826 -220991752 - L1ME4a LINE L1 0 6121 5980 2050 141 0 3 chr3 6532873 6533170 -220991408 + AluSx SINE Alu 1 296 -16 535 284 37 46 chr3 6533180 6533398 -220991180 + MIR SINE MIR 47 262 0 185 380 133 0 chr3 6534781 6534894 -220989684 + MIR3 SINE MIR 44 171 -37 421 296 45 34 chr3 6536973 6537149 -220987429 - MIR SINE MIR -19 243 66 637 143 0 114 chr3 6537862 6538002 -220986576 + FLAM_A SINE Alu 5 128 -5 319 324 20 0 chr3 6538112 6538214 -220986364 - MIR3 SINE MIR -39 169 66 2284 110 0 0 chr3 6538293 6538594 -220985984 - AluSc SINE Alu -8 301 1 302 241 12 36 chr3 6539237 6539320 -220985258 + MIR SINE MIR 61 141 -121 1818 157 0 60 chr3 6540637 6540968 -220983610 + AluJb SINE Alu 1 311 -1 251 247 27 55 chr3 6541134 6541207 -220983371 - MER5B DNA MER1_type -1 177 107 23 0 0 0 chr3 6541247 6541270 -220983308 + AT_rich Low_complexity Low_complexity 1 23 0 206 191 0 0 chr3 6541831 6541873 -220982705 - MIR SINE MIR -32 230 189 730 196 124 0 chr3 6541970 6542123 -220982455 - MER5B DNA MER1_type -3 175 4 2664 126 62 5 chr3 6542383 6542821 -220981757 - L1MA8 LINE L1 0 6291 5829 243 0 0 0 chr3 6543371 6543398 -220981180 + (T)n Simple_repeat Simple_repeat 1 27 0 600 302 6 6 chr3 6543828 6544010 -220980568 + MIR SINE MIR 12 193 -69 195 212 0 0 chr3 6544074 6544107 -220980471 + L2 LINE L2 3201 3233 -39 21 36 0 0 chr3 6544135 6544163 -220980415 + AT_rich Low_complexity Low_complexity 1 28 0 252 381 138 0 chr3 6544208 6544397 -220980181 + MIR SINE MIR 46 260 -2 400 264 92 12 chr3 6545651 6545814 -220978764 - MIR SINE MIR -1 261 86 213 254 0 18 chr3 6545841 6545896 -220978682 - L2 LINE L2 -2 3270 3217 1577 178 11 3 chr3 6546257 6546544 -220978034 - AluJo SINE Alu -23 289 1 348 284 123 0 chr3 6547150 6547305 -220977273 + MIR3 SINE MIR 20 193 -15 710 226 62 5 chr3 6548892 6549087 -220975491 - MIR SINE MIR -55 207 2 1786 148 11 0 chr3 6549570 6549841 -220974737 + AluJo SINE Alu 1 274 -38 198 0 0 0 chr3 6549842 6549864 -220974714 + (CAA)n Simple_repeat Simple_repeat 1 22 0 227 209 30 15 chr3 6550116 6550183 -220974395 - MIR SINE MIR -90 172 105 420 267 86 97 chr3 6550413 6550891 -220973687 + L2 LINE L2 2591 3053 -219 825 292 5 0 chr3 6550924 6551140 -220973438 + MIR SINE MIR 24 240 -22 264 278 213 0 chr3 6551197 6551305 -220973273 + L2 LINE L2 3141 3271 -1 235 291 243 0 chr3 6551320 6551423 -220973155 - MER5A DNA MER1_type 0 189 62 2025 149 0 19 chr3 6551423 6551739 -220972839 - AluJb SINE Alu -2 310 1 320 254 150 68 chr3 6551786 6552066 -220972512 + L3 LINE CR1 1233 1535 -42 740 260 60 16 chr3 6552369 6552619 -220971959 + MIR SINE MIR 1 261 -1 1298 149 36 5 chr3 6553183 6553404 -220971174 - L1PB4 LINE L1 0 6156 5929 2574 57 0 16 chr3 6554496 6554812 -220969766 - AluY SINE Alu 0 311 1 624 274 87 20 chr3 6556172 6556471 -220968107 - L1MCa LINE L1 -2457 3672 3354 1828 188 169 2 chr3 6556516 6556941 -220967637 + MLT1D LTR MaLR 1 496 -9 397 273 71 24 chr3 6556955 6557252 -220967326 - L1MCa LINE L1 -2854 3275 2965 6386 82 28 8 chr3 6557252 6558120 -220966458 + L1PA10 LINE L1 5276 6160 -8 459 252 57 69 chr3 6558118 6558538 -220966040 - L1MCa LINE L1 -3116 3013 2599 * 368 195 73 0 chr3 6558568 6558650 -220965928 + L1ME1 LINE L1 6029 6116 -50 2187 142 87 25 chr3 6558652 6559053 -220965525 + MSTC LTR MaLR 1 426 -2 703 249 61 42 chr3 6559211 6559588 -220964990 - L1MCa LINE L1 -3649 2480 2097 249 108 0 0 chr3 6559641 6559678 -220964900 + (TG)n Simple_repeat Simple_repeat 2 38 0 1671 166 48 0 chr3 6559678 6559949 -220964629 - AluSx SINE Alu -28 284 1 274 257 117 11 chr3 6560522 6560701 -220963877 - L1MCa LINE L1 -4928 1201 1004 2269 107 0 0 chr3 6560705 6560996 -220963582 - AluSc SINE Alu -18 291 1 589 279 98 33 chr3 6561005 6561525 -220963053 - L1MCa LINE L1 -5029 1090 537 365 342 94 19 chr3 6561764 6562030 -220962548 - L1MCa LINE L1 -5776 343 58 1058 150 48 0 chr3 6562196 6562363 -220962215 + FRAM SINE Alu 2 176 0 256 23 0 47 chr3 6562503 6562546 -220962032 + (CAAAA)n Simple_repeat Simple_repeat 2 42 0 1619 102 0 0 chr3 6562609 6562814 -220961764 - AluSx SINE Alu -107 205 1 395 304 116 39 chr3 6562822 6563210 -220961368 - MLT1L LTR MaLR -3 612 195 1804 149 14 20 chr3 6563872 6564167 -220960411 - AluJo SINE Alu -19 293 1 1882 176 0 0 chr3 6564412 6564713 -220959865 + AluJb SINE Alu 1 301 -11 1979 145 3 0 chr3 6564763 6565052 -220959526 - AluJo SINE Alu -6 306 17 439 314 71 18 chr3 6565054 6565223 -220959355 + MIR SINE MIR 84 261 -1 343 344 75 0 chr3 6565405 6565565 -220959013 - MIR SINE MIR -71 191 20 21 0 0 0 chr3 6565832 6565853 -220958725 + AT_rich Low_complexity Low_complexity 1 21 0 446 338 20 7 chr3 6565984 6566135 -220958443 + MIR3 SINE MIR 7 159 -49 206 227 23 0 chr3 6566150 6566194 -220958384 - L2 LINE L2 -15 3257 3213 839 213 33 0 chr3 6566716 6566960 -220957618 + L1M1 LINE L1 3466 3717 -3848 942 55 16 8 chr3 6566960 6567088 -220957490 + AluY SINE Alu 181 309 -2 3964 206 25 16 chr3 6567088 6568088 -220956490 + L1M1 LINE L1 3711 4719 -2846 345 276 57 0 chr3 6568826 6568931 -220955647 - MIR SINE MIR -2 260 150 824 168 28 10 chr3 6568931 6569213 -220955365 - MLT1A1 LTR MaLR 0 365 3 483 198 83 0 chr3 6569214 6569310 -220955268 - MIR SINE MIR -107 155 52 2209 115 0 0 chr3 6569778 6570074 -220954504 - AluSx SINE Alu -16 296 1 2261 116 0 0 chr3 6570141 6570435 -220954143 - AluSx SINE Alu -18 294 1 1805 177 17 0 chr3 6570970 6571269 -220953309 - AluJb SINE Alu -8 304 1 2124 124 7 23 chr3 6571327 6571634 -220952944 + AluSx SINE Alu 1 302 -10 552 305 53 10 chr3 6571792 6572186 -220952392 + L1MEc LINE L1 1032 1442 -4954 554 308 108 71 chr3 6572441 6572931 -220951647 + L2 LINE L2 2805 3312 -1 2572 34 0 3 chr3 6573376 6573674 -220950904 - AluY SINE Alu -14 297 1 336 175 0 0 chr3 6576336 6576399 -220948179 + CT-rich Low_complexity Low_complexity 1 63 0 1531 176 0 22 chr3 6577502 6577769 -220946809 + AluJo SINE Alu 49 309 -3 193 292 14 69 chr3 6578484 6578556 -220946022 - L2 LINE L2 -5 3267 3200 2425 168 81 76 chr3 6578950 6579583 -220944995 - MER21B LTR ERV1 0 863 228 25 51 0 0 chr3 6579700 6579739 -220944839 + AT_rich Low_complexity Low_complexity 1 39 0 26 64 0 0 chr3 6580982 6581029 -220943549 + AT_rich Low_complexity Low_complexity 1 47 0 318 251 168 72 chr3 6581292 6581638 -220942940 - MLT1H LTR MaLR -148 401 23 197 108 27 0 chr3 6581690 6581727 -220942851 + CT-rich Low_complexity Low_complexity 3 40 0 1797 143 37 10 chr3 6581729 6582023 -220942555 - AluJo SINE Alu -10 302 1 1141 231 80 15 chr3 6582444 6582768 -220941810 + L2 LINE L2 2122 2466 -848 227 172 47 0 chr3 6582882 6582946 -220941632 - Charlie7 DNA MER1_type -1889 723 657 3548 173 6 6 chr3 6582962 6583626 -220940952 - L1MB2 LINE L1 -1 6170 5507 1452 295 142 10 chr3 6583631 6584378 -220940200 + L2 LINE L2 2447 3310 -3 375 283 29 7 chr3 6585356 6585494 -220939084 + L1ME3A LINE L1 6022 6162 -8 2045 153 3 0 chr3 6586128 6586429 -220938149 + AluJb SINE Alu 1 302 -10 343 248 94 16 chr3 6586691 6586819 -220937759 - MER5A DNA MER1_type -10 179 34 181 286 75 45 chr3 6586865 6586998 -220937580 - L2 LINE L2 -1689 1625 1489 200 254 28 56 chr3 6587156 6587227 -220937351 - MIR3 SINE MIR -14 194 126 329 309 29 37 chr3 6587304 6587440 -220937138 - L2 LINE L2 0 3272 3138 306 295 215 34 chr3 6587703 6587852 -220936726 - MER5A DNA MER1_type 0 189 14 213 209 0 23 chr3 6588870 6588913 -220935665 + (TG)n Simple_repeat Simple_repeat 1 42 0 413 287 149 37 chr3 6589478 6589666 -220934912 + MIR SINE MIR 27 235 -27 2457 64 0 0 chr3 6590318 6590616 -220933962 + AluY SINE Alu 1 298 -13 21 57 0 0 chr3 6592320 6592355 -220932223 + AT_rich Low_complexity Low_complexity 1 35 0 186 43 0 0 chr3 6594874 6594897 -220929681 + (GGAGA)n Simple_repeat Simple_repeat 1 23 0 2349 116 0 0 chr3 6595815 6596126 -220928452 - AluSx SINE Alu -1 311 1 2866 71 8 0 chr3 6596160 6596538 -220928040 - L1PA7 LINE L1 0 6154 5774 927 184 35 6 chr3 6596638 6596812 -220927766 - MER21B LTR ERV1 -684 179 1 214 318 135 56 chr3 6596827 6596953 -220927625 + L2 LINE L2 3134 3269 -3 1704 153 3 36 chr3 6597312 6597470 -220927108 - AluJb SINE Alu -21 291 146 2392 99 0 0 chr3 6597470 6597773 -220926805 - AluSq SINE Alu -10 303 1 1704 153 3 36 chr3 6597773 6597915 -220926663 - AluJb SINE Alu -166 146 1 362 219 58 2 chr3 6598005 6598108 -220926470 - MIR SINE MIR -56 152 42 183 200 0 0 chr3 6598177 6598207 -220926371 + L2 LINE L2 3258 3287 -26 228 94 19 57 chr3 6598351 6598404 -220926174 - L2 LINE L2 -30 3242 3192 299 228 44 88 chr3 6599092 6599206 -220925372 - MIR SINE MIR -60 148 40 577 157 9 0 chr3 6599385 6599493 -220925085 + L1MC1 LINE L1 5752 5860 -473 303 286 25 25 chr3 6599509 6599628 -220924950 - L1MC/D LINE L1 -1991 5817 5699 694 307 95 4 chr3 6599636 6599867 -220924711 - MIR SINE MIR -10 252 1 3530 154 10 56 chr3 6599978 6600707 -220923871 - L1MC1 LINE L1 -3 6330 5636 201 264 38 0 chr3 6600805 6600858 -220923720 - MIR SINE MIR -41 221 167 2851 74 0 6 chr3 6600978 6601344 -220923234 - THE1B LTR MaLR 0 364 1 246 250 70 35 chr3 6602093 6602265 -220922313 + HAL1 LINE L1 1974 2151 -356 252 322 84 0 chr3 6602616 6602855 -220921723 - L1MC5 LINE L1 -66 7895 7637 706 168 26 0 chr3 6602910 6603023 -220921555 - FLAM_A SINE Alu -14 119 4 451 274 160 9 chr3 6603534 6603753 -220920825 - MIR SINE MIR -6 256 5 947 207 84 0 chr3 6603806 6604009 -220920569 + MIR SINE MIR 12 231 -31 1017 99 215 11 chr3 6605864 6605960 -220918618 + MER30 DNA MER1_type 1 76 -154 225 0 0 0 chr3 6605960 6605985 -220918593 + (TAAA)n Simple_repeat Simple_repeat 1 25 0 1017 99 215 11 chr3 6605985 6606079 -220918499 + MER30 DNA MER1_type 76 230 0 23 0 0 0 chr3 6606268 6606291 -220918287 + AT_rich Low_complexity Low_complexity 1 23 0 969 280 37 47 chr3 6606594 6607023 -220917555 - L2 LINE L2 -3 3310 2886 1885 150 7 3 chr3 6607110 6607396 -220917182 + AluJb SINE Alu 11 297 -15 1373 198 95 29 chr3 6607705 6607806 -220916772 - MLT1C LTR MaLR -2 465 372 2389 88 3 0 chr3 6607806 6608113 -220916465 - AluSx SINE Alu -4 308 1 1373 198 95 29 chr3 6608113 6608389 -220916189 - MLT1C LTR MaLR -95 372 63 1204 180 214 0 chr3 6608385 6608679 -220915899 + MLT1A1 LTR MaLR 9 365 0 * 251 167 0 0 chr3 6608679 6608721 -220915857 - MLT1C LTR MaLR -321 69 28 263 0 0 0 chr3 6608740 6608771 -220915807 - U7 snRNA snRNA -31 32 2 270 319 14 21 chr3 6608949 6609090 -220915488 - MIR SINE MIR -10 252 113 372 43 0 0 chr3 6610470 6610516 -220914062 + (CA)n Simple_repeat Simple_repeat 2 47 0 741 251 64 0 chr3 6610850 6611053 -220913525 + MIR SINE MIR 41 256 -6 1803 159 14 7 chr3 6611476 6611772 -220912806 - AluJb SINE Alu -10 302 5 1547 137 115 46 chr3 6612657 6613001 -220911577 - MSTA LTR MaLR 0 428 3 2179 119 0 0 chr3 6613158 6613460 -220911118 + AluSx SINE Alu 3 304 -8 2923 103 2 10 chr3 6613495 6613902 -220910676 - MER4A LTR ERV1 0 664 261 670 102 0 10 chr3 6613902 6614000 -220910578 - MER4A LTR ERV1 -566 98 2 825 225 56 70 chr3 6614332 6614658 -220909920 - L1ME3 LINE L1 -2 6164 5858 1097 171 0 0 chr3 6614663 6614833 -220909745 + AluJb SINE Alu 129 298 -14 258 200 154 0 chr3 6614833 6614898 -220909680 - L1ME3 LINE L1 -293 5869 5795 559 329 27 4 chr3 6614949 6615174 -220909404 - MIR SINE MIR -1 261 32 416 208 40 94 chr3 6615490 6615639 -220908939 - LTR67 LTR ERVL -4 553 413 2383 97 3 3 chr3 6615917 6616228 -220908350 - AluSq SINE Alu -2 311 1 194 310 35 0 chr3 6616810 6616868 -220907710 - L2 LINE L2 -64 3249 3190 326 273 78 19 chr3 6617338 6617492 -220907086 + MLT1J2 LTR MaLR 1 163 -287 1162 204 25 116 chr3 6617762 6618160 -220906418 - MLT1A1 LTR MaLR 0 365 4 1568 205 0 16 chr3 6618253 6618556 -220906022 + AluJb SINE Alu 1 298 -14 1392 266 133 61 chr3 6618557 6618597 -220905981 - HAL1 LINE L1 -6 2501 2465 1038 137 28 11 chr3 6618597 6618779 -220905799 + L1MB5 LINE L1 5981 6165 -9 1392 266 133 61 chr3 6618779 6620024 -220904554 - HAL1 LINE L1 -42 2465 1123 231 234 9 27 chr3 6620039 6620150 -220904428 + C-rich Low_complexity Low_complexity 3 111 0 813 168 4 0 chr3 6620164 6620411 -220904167 + CT-rich Low_complexity Low_complexity 1 248 0 359 280 40 30 chr3 6620585 6620685 -220903893 - MER58 DNA MER1_type -228 113 13 412 309 129 36 chr3 6620685 6621073 -220903505 - HAL1 LINE L1 -1845 662 239 180 0 0 0 chr3 6621232 6621252 -220903326 + (T)n Simple_repeat Simple_repeat 1 20 0 287 256 31 70 chr3 6621542 6621671 -220902907 + L2 LINE L2 2287 2410 -904 2433 126 67 12 chr3 6621683 6622089 -220902489 - MSTA LTR MaLR 0 428 1 409 328 95 25 chr3 6622106 6622661 -220901917 + L2 LINE L2 2695 3210 -103 2448 82 0 3 chr3 6622661 6622964 -220901614 - AluSc SINE Alu -7 302 1 2067 89 33 0 chr3 6622969 6623264 -220901314 - AluSc SINE Alu 0 304 1 264 243 126 9 chr3 6623388 6623499 -220901079 - L2 LINE L2 -2 3311 3188 2414 89 0 3 chr3 6624943 6625245 -220899333 + AluSx SINE Alu 6 306 -6 2556 60 0 3 chr3 6626106 6626408 -220898170 - AluY SINE Alu -10 301 1 954 131 15 0 chr3 6626575 6626712 -220897866 + FAM SINE Alu 32 170 -15 225 0 0 0 chr3 6626736 6626761 -220897817 + (TG)n Simple_repeat Simple_repeat 2 26 0 860 248 148 18 chr3 6626863 6627254 -220897324 - Charlie7 DNA MER1_type -1896 716 275 2085 130 0 7 chr3 6627379 6627672 -220896906 - AluSx SINE Alu -21 291 1 1318 144 9 5 chr3 6627828 6628043 -220896535 + AluSg/x SINE Alu 95 310 -2 808 298 25 0 chr3 6628676 6628918 -220895660 + MIR SINE MIR 13 260 -2 203 288 38 0 chr3 6628963 6629043 -220895535 + MIR SINE MIR 66 148 -114 229 331 0 32 chr3 6629224 6629348 -220895230 + L2 LINE L2 3138 3257 -15 290 0 75 0 chr3 6629739 6629779 -220894799 + (TTTTA)n Simple_repeat Simple_repeat 2 44 0 701 304 77 23 chr3 6629779 6630170 -220894408 + L2 LINE L2 2902 3313 0 720 237 179 24 chr3 6630531 6630860 -220893718 - MER20B DNA MER1_type -6 777 398 544 187 19 0 chr3 6630867 6630974 -220893604 + Ricksha DNA DNA 11 119 -1927 4348 127 78 45 chr3 6631001 6631113 -220893465 + Ricksha DNA DNA 2350 2457 -789 2047 113 3 7 chr3 6631113 6631438 -220893140 - AluSx SINE Alu 0 324 1 4348 127 78 45 chr3 6631438 6632186 -220892392 + Ricksha DNA DNA 2457 3239 -7 453 294 5 33 chr3 6632192 6632376 -220892202 - MER20B DNA MER1_type -373 410 232 699 186 8 8 chr3 6632378 6632502 -220892076 - AluJb SINE Alu -52 260 137 422 360 23 6 chr3 6632513 6632685 -220891893 - MER20B DNA MER1_type -554 229 55 693 270 60 36 chr3 6632908 6633241 -220891337 - MER102b DNA MER1_type 0 341 1 2257 105 7 3 chr3 6633481 6633787 -220890791 - AluSc SINE Alu -2 307 1 1731 158 14 11 chr3 6634766 6635051 -220889527 - AluJb SINE Alu -14 298 13 2077 103 0 15 chr3 6635322 6635594 -220888984 - AluSq SINE Alu -45 268 1 334 261 98 83 chr3 6635598 6635862 -220888716 - L1MC/D LINE L1 -441 5680 5559 2347 69 0 16 chr3 6635893 6636196 -220888382 - AluY SINE Alu -13 298 1 219 125 0 0 chr3 6636413 6636453 -220888125 + (TTTG)n Simple_repeat Simple_repeat 2 41 0 1896 82 58 0 chr3 6636455 6636698 -220887880 - AluSp SINE Alu -56 257 1 2207 92 14 0 chr3 6636997 6637280 -220887298 - AluSx SINE Alu -25 287 1 711 163 163 0 chr3 6637281 6637422 -220887156 - L1PA16 LINE L1 -127 6039 5876 252 308 158 0 chr3 6637906 6638039 -220886539 + MER5B DNA MER1_type 1 154 -24 308 209 15 0 chr3 6638134 6638201 -220886377 - MER5A DNA MER1_type -96 93 26 2203 114 10 0 chr3 6638214 6638513 -220886065 - AluSx SINE Alu -10 302 1 962 303 98 18 chr3 6639368 6639919 -220884659 + L2 LINE L2 2002 2596 -718 675 175 9 0 chr3 6639985 6640099 -220884479 + FLAM_A SINE Alu 1 115 -18 584 238 130 11 chr3 6640141 6640326 -220884252 + MER112 DNA MER1_type 54 260 0 355 259 18 36 chr3 6640342 6640454 -220884124 + MER5A DNA MER1_type 17 126 -63 230 257 18 62 chr3 6640483 6640596 -220883982 + L2 LINE L2 2599 2706 -608 244 262 16 0 chr3 6640735 6640796 -220883782 + MER5B DNA MER1_type 51 112 -66 945 292 41 62 chr3 6640865 6641331 -220883247 + L2 LINE L2 2856 3311 -2 565 181 124 0 chr3 6641451 6641642 -220882936 - FLAM_A SINE Alu 0 204 1 5934 73 11 14 chr3 6641662 6642456 -220882122 - L1PA14 LINE L1 -1 6160 5369 511 284 116 71 chr3 6643461 6643925 -220880653 - MLT1K LTR MaLR -99 489 5 764 278 48 44 chr3 6645117 6645387 -220879191 + LTR16A1 LTR ERVL 187 457 0 680 249 103 80 chr3 6645387 6645818 -220878760 - MLT1J LTR MaLR -70 441 1 374 280 99 33 chr3 6645874 6646056 -220878522 + MIR SINE MIR 3 196 -66 974 311 80 18 chr3 6646072 6646397 -220878181 - MSTA LTR MaLR 0 428 1 209 264 92 0 chr3 6646615 6646702 -220877876 - L2 LINE L2 -1366 1948 1854 534 306 17 69 chr3 6647870 6648158 -220876420 - Charlie8 DNA MER1_type -2144 273 1 1972 147 0 7 chr3 6649185 6649477 -220875101 + AluJb SINE Alu 1 290 -22 321 120 67 53 chr3 6649545 6649620 -220874958 - MER103 DNA DNA -76 90 15 215 301 137 0 chr3 6649776 6649849 -220874729 - L3 LINE CR1 -469 1108 1026 294 326 7 15 chr3 6649975 6650110 -220874468 - MIR SINE MIR -73 189 56 811 294 37 25 chr3 6650132 6650455 -220874123 + MER102b DNA MER1_type 9 335 -6 589 281 50 43 chr3 6650713 6651016 -220873562 - L1ME1 LINE L1 -53 6113 5809 267 93 0 0 chr3 6651332 6651375 -220873203 + (TG)n Simple_repeat Simple_repeat 2 44 0 4302 185 42 34 chr3 6651948 6652084 -220872494 + L1MB7 LINE L1 4825 4959 -1225 1923 125 68 0 chr3 6652084 6652363 -220872215 + AluJb SINE Alu 1 298 -14 4302 185 42 34 chr3 6652363 6653101 -220871477 + L1MB7 LINE L1 4959 5713 -471 1634 179 7 30 chr3 6653101 6653397 -220871181 + AluJb SINE Alu 17 305 -7 4302 185 42 34 chr3 6653397 6653857 -220870721 + L1MB7 LINE L1 5713 6168 -16 1037 96 32 26 chr3 6654075 6654231 -220870347 - L1PA16 LINE L1 0 6166 6010 2170 105 0 3 chr3 6654264 6654558 -220870020 - AluSc SINE Alu 0 309 17 2665 127 39 18 chr3 6654558 6655000 -220869578 - L1PA16 LINE L1 -381 5785 5335 1123 230 125 71 chr3 6655681 6655818 -220868760 + L1MC4 LINE L1 7385 7513 -529 1737 122 68 32 chr3 6655818 6656097 -220868481 - AluSg SINE Alu -21 289 1 1123 230 125 71 chr3 6656097 6656581 -220867997 + L1MC4 LINE L1 7513 8040 -2 2817 100 41 30 chr3 6657233 6657693 -220866885 - MER4C LTR ERV1 0 465 1 447 146 361 8 chr3 6658019 6658149 -220866429 + MER5A DNA MER1_type 14 189 0 301 307 0 0 chr3 6658176 6658264 -220866314 + MER5A DNA MER1_type 1 88 -101 3851 151 23 33 chr3 6658301 6659032 -220865546 - LTR8A LTR ERV1 -3 724 1 215 206 16 48 chr3 6659085 6659148 -220865430 + MER5B DNA MER1_type 116 176 -2 930 198 35 30 chr3 6659370 6659567 -220865011 + MER20 DNA MER1_type 4 201 -18 2243 110 7 7 chr3 6659567 6659877 -220864701 + AluSx SINE Alu 3 312 0 351 0 0 0 chr3 6659898 6659937 -220864641 + (TA)n Simple_repeat Simple_repeat 1 39 0 554 225 23 0 chr3 6661673 6661846 -220862732 + CT-rich Low_complexity Low_complexity 4 180 0 1797 108 116 0 chr3 6662198 6662456 -220862122 + AluSg SINE Alu 1 288 -22 222 274 0 0 chr3 6663661 6663712 -220860866 - MIR SINE MIR -17 245 195 1559 248 86 21 chr3 6663713 6664150 -220860428 + MLT1G1 LTR MaLR 13 436 -106 650 186 68 37 chr3 6664224 6664385 -220860193 - MIR SINE MIR -59 203 38 296 259 69 17 chr3 6664752 6664868 -220859710 - MIR SINE MIR -50 212 91 1013 198 23 14 chr3 6665963 6666180 -220858398 - MER20 DNA MER1_type 0 219 1 327 300 92 0 chr3 6666826 6666946 -220857632 + MIR SINE MIR 36 166 -96 608 253 104 0 chr3 6666957 6667139 -220857439 - L1MC4 LINE L1 -1323 6719 6519 30 0 0 0 chr3 6667356 6667386 -220857192 + AT_rich Low_complexity Low_complexity 1 30 0 433 278 124 27 chr3 6667740 6668039 -220856539 - L1ME LINE L1 -471 5699 5372 354 273 124 36 chr3 6668446 6668640 -220855938 - Tigger8 DNA MER2_type -399 267 57 2319 76 0 14 chr3 6669185 6669498 -220855080 - AluY SINE Alu 0 311 1 412 264 175 41 chr3 6669530 6669776 -220854802 - L2 LINE L2 -2 3311 3033 256 263 0 85 chr3 6670990 6671108 -220853470 - L1MC5 LINE L1 -48 7913 7806 237 191 59 29 chr3 6671527 6671595 -220852983 - MIR SINE MIR -113 149 80 1687 197 0 16 chr3 6671676 6671985 -220852593 + AluJo SINE Alu 1 304 -8 836 278 107 41 chr3 6672803 6673195 -220851383 - L2 LINE L2 -1 3312 2895 466 274 42 42 chr3 6673198 6673505 -220851073 - L2 LINE L2 -1474 1840 1534 180 125 0 0 chr3 6673904 6673936 -220850642 + (TTTTTA)n Simple_repeat Simple_repeat 4 35 0 195 330 174 0 chr3 6674090 6674199 -220850379 - L2 LINE L2 -2 3311 3184 2724 179 24 12 chr3 6674859 6675361 -220849217 - MLT2B2 LTR ERVL -7 508 1 237 33 0 0 chr3 6677209 6677239 -220847339 + (GA)n Simple_repeat Simple_repeat 1 30 0 306 0 0 0 chr3 6677241 6677275 -220847303 + (TG)n Simple_repeat Simple_repeat 2 35 0 468 266 122 53 chr3 6677663 6678102 -220846476 - MLT1H1 LTR MaLR -13 542 48 719 215 0 0 chr3 6678524 6678645 -220845933 + FLAM_A SINE Alu 1 121 -12 229 309 37 0 chr3 6680089 6680170 -220844408 + MIR SINE MIR 3 86 -176 234 259 71 0 chr3 6681444 6681529 -220843049 - MIR SINE MIR -69 193 103 397 283 29 35 chr3 6681618 6681791 -220842787 - MIR SINE MIR -12 250 79 501 248 55 3 chr3 6682699 6682893 -220841685 + MER58 DNA MER1_type 1 2418 -2 660 297 14 5 chr3 6682933 6683145 -220841433 - MIR SINE MIR -41 221 8 205 159 91 0 chr3 6683404 6683448 -220841130 - MIR SINE MIR -111 151 104 634 164 102 8 chr3 6683671 6683799 -220840779 - FLAM_C SINE Alu -2 141 2 504 325 35 4 chr3 6684696 6684927 -220839651 - L1MC4a LINE L1 -1888 5920 5683 1259 169 49 4 chr3 6684999 6685224 -220839354 + MER46A DNA MER2_type 2 236 0 1399 237 132 56 chr3 6685260 6685611 -220838967 + L1ME3 LINE L1 4943 5266 -896 2093 134 7 0 chr3 6685611 6685902 -220838676 + AluSx SINE Alu 1 293 -19 1399 237 132 56 chr3 6685902 6686589 -220837989 + L1ME3 LINE L1 5266 6162 0 1653 147 45 18 chr3 6687493 6687779 -220836799 + AluJo SINE Alu 8 301 -11 210 323 21 0 chr3 6687849 6687945 -220836633 + MIR SINE MIR 100 197 -65 495 331 18 0 chr3 6687953 6688122 -220836456 - MIR SINE MIR -2 260 89 2236 101 3 13 chr3 6688455 6688753 -220835825 + AluSp SINE Alu 1 295 -18 266 206 32 58 chr3 6689907 6690062 -220834516 + (TTATA)n Simple_repeat Simple_repeat 4 154 0 1823 173 49 0 chr3 6690088 6690418 -220834160 - MER7A DNA MER2_type 0 346 3 393 275 123 34 chr3 6690490 6690726 -220833852 - L1MC4a LINE L1 -1773 6035 5779 442 269 31 8 chr3 6690809 6690939 -220833639 - L1MC4a LINE L1 -2280 5528 5396 527 277 98 94 chr3 6691003 6691717 -220832861 - L1ME3 LINE L1 0 6170 5451 2437 179 37 16 chr3 6691717 6692226 -220832352 - L1MB8 LINE L1 -1 6177 5658 527 277 98 94 chr3 6692226 6692362 -220832216 - L1ME3 LINE L1 -719 5451 5317 303 250 214 31 chr3 6692413 6692609 -220831969 - L1ME3 LINE L1 -905 5241 5010 342 0 0 0 chr3 6692932 6692970 -220831608 + (TG)n Simple_repeat Simple_repeat 2 39 0 2265 132 0 0 chr3 6693064 6693368 -220831210 - AluSx SINE Alu -8 304 1 242 262 16 0 chr3 6693805 6693866 -220830712 - HsTC2 DNA Tc2 -1824 74 13 736 243 77 0 chr3 6694106 6694275 -220830303 - MER58A DNA MER1_type -16 208 27 1924 152 0 26 chr3 6694685 6694987 -220829591 + AluSx SINE Alu 1 294 -18 257 258 0 15 chr3 6695844 6695910 -220828668 + MIR SINE MIR 190 254 -8 215 291 104 97 chr3 6695916 6696050 -220828528 + L2 LINE L2 3138 3272 0 2375 132 31 14 chr3 6696329 6696686 -220827892 - THE1B LTR MaLR 0 364 2 282 275 99 0 chr3 6696897 6696988 -220827590 + MIR SINE MIR 142 241 -21 215 327 114 27 chr3 6697220 6697440 -220827138 + MIR SINE MIR 20 258 -4 21 57 0 0 chr3 6697468 6697503 -220827075 + AT_rich Low_complexity Low_complexity 1 35 0 508 260 68 40 chr3 6698011 6698188 -220826390 - MIR3 SINE MIR -13 195 14 196 347 0 32 chr3 6698656 6698751 -220825827 - MIR3 SINE MIR -107 101 10 345 198 146 0 chr3 6698832 6698928 -220825650 - MER103 DNA DNA -51 115 6 1372 162 81 56 chr3 6699607 6699749 -220824829 + L1PA16 LINE L1 5876 6013 -153 2422 77 3 0 chr3 6699749 6700046 -220824532 + AluSp SINE Alu 1 298 -15 1372 162 81 56 chr3 6700046 6700187 -220824391 + L1PA16 LINE L1 6013 6166 0 2056 211 2 29 chr3 6700852 6701297 -220823281 - L1MD3 LINE L1 -9 7986 7554 243 223 134 45 chr3 6702388 6702500 -220822078 + MER113 DNA MER1_type? 218 339 -182 692 201 71 33 chr3 6702622 6702806 -220821772 + MIR SINE MIR 13 203 -59 1571 246 86 21 chr3 6702880 6703317 -220821261 - MLT1G1 LTR MaLR -106 436 13 260 294 0 0 chr3 6703318 6703386 -220821192 + MIR SINE MIR 195 262 0 197 290 17 137 chr3 6703496 6703796 -220820782 - L2 LINE L2 -46 3226 2963 315 203 106 57 chr3 6703824 6703947 -220820631 + MER113 DNA MER1_type? 218 346 -175 321 219 73 57 chr3 6705414 6705537 -220819041 - L1ME4a LINE L1 -11 6110 5986 240 35 0 0 chr3 6706277 6706306 -220818272 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 2305 111 3 0 chr3 6706549 6706855 -220817723 + AluSx SINE Alu 1 307 -5 207 0 0 0 chr3 6707602 6707625 -220816953 + (GAAA)n Simple_repeat Simple_repeat 2 24 0 653 277 72 44 chr3 6711404 6711653 -220812925 - MIR SINE MIR -1 261 6 2203 99 0 0 chr3 6712007 6712299 -220812279 + AluSx SINE Alu 1 292 -20 28 0 0 0 chr3 6712451 6712479 -220812099 + AT_rich Low_complexity Low_complexity 1 28 0 291 283 22 43 chr3 6714976 6715068 -220809510 - MIR SINE MIR -79 129 40 552 202 11 0 chr3 6716412 6716514 -220808064 - L1ME3 LINE L1 -55 6107 5998 357 275 191 0 chr3 6716550 6716681 -220807897 - L2 LINE L2 0 3272 3117 258 56 0 0 chr3 6717544 6717580 -220806998 + (TA)n Simple_repeat Simple_repeat 2 37 0 242 89 44 0 chr3 6717602 6717647 -220806931 + LTR66 LTR ERVL 394 440 -170 332 366 12 30 chr3 6719274 6719303 -220805275 - MIR3 SINE MIR -25 183 155 2082 120 3 0 chr3 6719303 6719612 -220804966 + AluSx SINE Alu 1 310 -2 332 366 12 30 chr3 6719612 6719746 -220804832 - MIR3 SINE MIR -53 155 23 30 59 0 0 chr3 6719877 6719928 -220804650 + AT_rich Low_complexity Low_complexity 1 51 0 21 57 0 0 chr3 6722386 6722421 -220802157 + AT_rich Low_complexity Low_complexity 1 35 0 1999 126 7 0 chr3 6722473 6722766 -220801812 - AluSx SINE Alu -17 295 1 26 0 0 0 chr3 6723930 6723956 -220800622 + AT_rich Low_complexity Low_complexity 1 26 0 1698 132 28 28 chr3 6724023 6724312 -220800266 - AluJo SINE Alu -23 289 1 364 300 111 37 chr3 6724316 6724506 -220800072 - L1ME3 LINE L1 -122 5999 5796 289 235 41 20 chr3 6724568 6724666 -220799912 - L1ME3 LINE L1 -466 5655 5556 236 350 12 0 chr3 6724750 6724830 -220799748 - MIR SINE MIR -113 149 69 2150 76 0 10 chr3 6724887 6725176 -220799402 - L1MA1 LINE L1 -1 6301 6016 619 242 124 0 chr3 6725621 6725774 -220798804 + MIR SINE MIR 66 237 -25 183 42 0 0 chr3 6726653 6726677 -220797901 + (A)n Simple_repeat Simple_repeat 1 24 0 186 43 0 0 chr3 6726712 6726735 -220797843 + (TG)n Simple_repeat Simple_repeat 2 24 0 441 0 0 0 chr3 6726808 6726857 -220797721 + (TG)n Simple_repeat Simple_repeat 2 50 0 436 241 20 79 chr3 6728714 6728917 -220795661 - L1MC5 LINE L1 -34 7927 7737 374 298 38 15 chr3 6730027 6730158 -220794420 - MIR SINE MIR -12 250 117 186 227 0 91 chr3 6730836 6730902 -220793676 - L2 LINE L2 -216 3056 2997 193 211 193 0 chr3 6731073 6731130 -220793448 + L2 LINE L2 3204 3271 -1 384 293 173 42 chr3 6731370 6731561 -220793017 + MIR SINE MIR 44 259 -3 311 259 0 0 chr3 6732041 6732099 -220792479 + L2 LINE L2 3215 3272 0 328 85 0 0 chr3 6732646 6732693 -220791885 - L1MB7 LINE L1 -8 6176 6130 537 323 12 6 chr3 6732767 6732934 -220791644 - MER91A DNA MER1_type -27 169 2 455 253 58 93 chr3 6734184 6734331 -220790247 + L1ME3 LINE L1 5946 6084 -78 2074 132 21 6 chr3 6734331 6734664 -220789914 + L1PA13 LINE L1 5826 6163 0 455 253 58 93 chr3 6734664 6734741 -220789837 + L1ME3 LINE L1 6084 6162 0 473 178 0 0 chr3 6735900 6735973 -220788605 - MER2 DNA MER2_type 0 345 273 185 294 39 0 chr3 6735992 6736043 -220788535 - MIR SINE MIR -133 129 77 1112 269 128 39 chr3 6736096 6736622 -220787956 - MLT1H1 LTR MaLR -5 548 1 408 247 33 60 chr3 6738611 6738761 -220785817 + MIR SINE MIR 28 173 -89 764 174 0 0 chr3 6739073 6739194 -220785384 - FLAM_A SINE Alu -11 122 2 31 0 0 0 chr3 6739197 6739228 -220785350 + AT_rich Low_complexity Low_complexity 1 31 0 369 43 0 0 chr3 6739442 6739489 -220785089 - MADE1 DNA Mariner 0 80 34 185 105 0 53 chr3 6739590 6739628 -220784950 + (TTTCC)n Simple_repeat Simple_repeat 5 40 0 2028 91 0 4 chr3 6740252 6740567 -220784011 - AluSx SINE Alu 0 320 7 818 250 18 14 chr3 6740875 6741095 -220783483 + MER58A DNA MER1_type 1 221 -3 792 181 11 27 chr3 6741298 6741649 -220782929 + CT-rich Low_complexity Low_complexity 1 345 0 396 316 100 40 chr3 6742007 6742406 -220782172 + L2 LINE L2 2107 2529 -785 259 341 12 0 chr3 6742463 6742548 -220782030 - MIR SINE MIR -169 93 8 184 222 44 0 chr3 6742595 6742640 -220781938 + L2 LINE L2 2601 2647 -667 216 267 78 43 chr3 6743038 6743154 -220781424 + L2 LINE L2 3150 3269 -3 203 304 11 76 chr3 6743162 6743254 -220781324 + MIR SINE MIR 158 243 -19 371 313 9 0 chr3 6743701 6743816 -220780762 - MIR SINE MIR -92 170 55 412 195 114 57 chr3 6744547 6744670 -220779908 - MIR3 SINE MIR -69 139 10 189 107 0 0 chr3 6747165 6747193 -220777385 + (TTTC)n Simple_repeat Simple_repeat 2 29 0 23 0 0 0 chr3 6748575 6748598 -220775980 + AT_rich Low_complexity Low_complexity 1 23 0 608 233 0 0 chr3 6749120 6749236 -220775342 - FLAM_A SINE Alu -17 116 1 531 282 62 66 chr3 6749254 6749559 -220775019 - L2 LINE L2 -19 3253 2950 240 289 72 40 chr3 6750247 6750399 -220774179 - MIR SINE MIR -34 228 72 189 0 0 0 chr3 6751608 6751629 -220772949 + (T)n Simple_repeat Simple_repeat 1 21 0 815 129 0 0 chr3 6751843 6751967 -220772611 - FLAM_C SINE Alu -9 134 11 2671 83 0 0 chr3 6752763 6753114 -220771464 - L1PA14 LINE L1 0 6161 5811 427 326 7 28 chr3 6753467 6753608 -220770970 - MIR3 SINE MIR -61 147 10 810 241 82 0 chr3 6753991 6754211 -220770367 + MIR SINE MIR 8 245 -17 471 298 7 28 chr3 6755158 6755299 -220769279 + MIR3 SINE MIR 10 147 -61 403 163 12 12 chr3 6755933 6756013 -220768565 + MIR3 SINE MIR 82 161 -47 229 277 11 96 chr3 6756556 6756650 -220767928 + MIR3 SINE MIR 79 167 -41 519 217 32 106 chr3 6756870 6756954 -220767624 - L1ME2 LINE L1 -9 6155 6066 1804 194 77 58 chr3 6756954 6757450 -220767128 - MLT1D LTR MaLR 0 505 1 519 217 32 106 chr3 6757450 6757571 -220767007 - L1ME2 LINE L1 -98 6066 5964 2342 132 71 0 chr3 6757571 6757964 -220766614 - L1PA16 LINE L1 -5 6161 5741 252 186 0 34 chr3 6758609 6758668 -220765910 - FLAM_A SINE Alu -2 131 75 588 224 109 21 chr3 6758754 6758946 -220765632 - MIR SINE MIR -53 209 1 357 339 0 0 chr3 6759088 6759197 -220765381 - MIR SINE MIR -147 115 7 4086 84 20 32 chr3 6759210 6759807 -220764771 + L1PA10 LINE L1 5576 6165 -3 513 331 118 10 chr3 6760816 6761130 -220763448 - L2 LINE L2 0 3313 2966 705 118 0 0 chr3 6761377 6761487 -220763091 + (TGGA)n Simple_repeat Simple_repeat 1 110 0 207 0 0 0 chr3 6761503 6761526 -220763052 + (GAAAA)n Simple_repeat Simple_repeat 2 24 0 918 155 94 75 chr3 6763657 6763870 -220760708 - MER20 DNA MER1_type -2 217 1 262 271 0 0 chr3 6763900 6763959 -220760619 - MIR SINE MIR 0 262 204 1205 168 72 50 chr3 6763983 6764245 -220760333 - AluJo SINE Alu -38 274 7 741 288 14 9 chr3 6764248 6764463 -220760115 - MIR SINE MIR -42 220 5 289 247 39 13 chr3 6764461 6764538 -220760040 + MIR SINE MIR 156 234 -28 * 234 162 0 0 chr3 6764629 6764666 -220759912 - MIR SINE MIR -59 149 113 2005 115 34 0 chr3 6765337 6765633 -220758945 - AluSx SINE Alu -1 311 6 187 209 0 0 chr3 6765894 6765937 -220758641 + L2 LINE L2 3270 3312 -1 358 219 289 0 chr3 6766098 6766212 -220758366 - MIR SINE MIR -108 154 8 256 284 68 0 chr3 6767701 6767775 -220756803 - L2 LINE L2 -186 3086 3008 185 319 0 0 chr3 6769435 6769504 -220755074 - L2 LINE L2 -9 3263 3195 570 279 132 6 chr3 6770602 6770886 -220753692 - L1MC4a LINE L1 -316 5805 5561 2032 99 31 7 chr3 6772516 6772808 -220751770 - AluSg SINE Alu -11 299 1 493 72 14 0 chr3 6776248 6776317 -220748261 + MADE1 DNA Mariner 1 70 -10 441 39 0 0 chr3 6776311 6776363 -220748215 - MADE1 DNA Mariner -27 53 2 * 630 262 126 19 chr3 6776456 6776670 -220747908 + MIR SINE MIR 14 250 -12 392 241 66 99 chr3 6778049 6778142 -220746436 + MIR SINE MIR 52 147 -115 1836 147 3 3 chr3 6778142 6778428 -220746150 + AluJb SINE Alu 4 289 -23 392 241 66 99 chr3 6778428 6778546 -220746032 + MIR SINE MIR 147 256 -6 300 230 40 14 chr3 6778873 6778947 -220745631 + MER117 DNA MER1_type 44 119 -78 366 302 82 80 chr3 6780438 6781002 -220743576 - L2 LINE L2 0 3272 2702 22 0 0 0 chr3 6781005 6781027 -220743551 + AT_rich Low_complexity Low_complexity 1 22 0 1977 106 10 51 chr3 6781037 6781348 -220743230 + AluSx SINE Alu 1 298 -14 343 250 92 58 chr3 6781595 6781715 -220742863 - MIR SINE MIR -114 148 25 378 327 31 25 chr3 6782099 6782258 -220742320 - MIR3 SINE MIR -13 195 36 751 237 72 10 chr3 6783423 6783617 -220740961 - MER3 DNA MER1_type -1 208 3 701 117 0 0 chr3 6783701 6783804 -220740774 + AluSg/x SINE Alu 208 310 -2 23 0 0 0 chr3 6783828 6783851 -220740727 + AT_rich Low_complexity Low_complexity 1 23 0 1862 123 6 43 chr3 6783851 6784175 -220740403 + AluSx SINE Alu 1 312 0 2225 110 0 0 chr3 6786046 6786356 -220738222 - AluSg SINE Alu 0 310 1 277 263 140 9 chr3 6786651 6786765 -220737813 + MIR3 SINE MIR 37 165 -43 2015 146 33 9 chr3 6787721 6788050 -220736528 - MER1B DNA MER1_type 0 337 1 1809 190 103 38 chr3 6788313 6788787 -220735791 - MLT1D LTR MaLR 0 505 1 2238 203 67 54 chr3 6788796 6789352 -220735226 - MLT1F1 LTR MaLR -4 563 1 285 216 135 0 chr3 6789842 6789916 -220734662 - L1MC5 LINE L1 -70 7891 7808 303 215 114 25 chr3 6790194 6790273 -220734305 + MIR3 SINE MIR 114 199 -9 491 329 7 0 chr3 6791874 6792011 -220732567 - MIR3 SINE MIR -41 167 30 223 309 0 37 chr3 6793162 6793243 -220731335 + MIR SINE MIR 31 108 -100 716 186 127 56 chr3 6794107 6794446 -220730132 - L1MC5 LINE L1 -34 7927 7565 3565 199 36 26 chr3 6794596 6795527 -220729051 + L1ME1 LINE L1 5196 6134 -32 233 304 180 12 chr3 6795528 6795666 -220728912 + MIR SINE MIR 7 164 -44 337 305 108 89 chr3 6796432 6796701 -220727877 - L2 LINE L2 -85 3187 2914 1946 141 0 20 chr3 6797920 6798247 -220726331 + AluSx SINE Alu 1 312 0 537 252 41 0 chr3 6798528 6798675 -220725903 + MER103 DNA DNA 2 154 -12 216 227 0 30 chr3 6798936 6798979 -220725599 + GA-rich Low_complexity Low_complexity 3 45 -21 1814 143 10 22 chr3 6798979 6799293 -220725285 + AluSx SINE Alu 1 310 -2 216 227 0 30 chr3 6799293 6799315 -220725263 + GA-rich Low_complexity Low_complexity 45 66 0 1707 142 184 6 chr3 6799383 6799742 -220724836 - MSTA LTR MaLR -2 426 4 2043 106 3 13 chr3 6800308 6800610 -220723968 - AluSx SINE Alu -13 299 1 898 289 100 22 chr3 6801504 6801913 -220722665 - MLT1K LTR MaLR -4 584 144 423 288 42 8 chr3 6803854 6803972 -220720606 + MIR SINE MIR 101 222 -40 263 247 56 34 chr3 6804498 6804587 -220719991 - L2 LINE L2 -29 3243 3153 487 262 48 12 chr3 6804646 6804817 -220719761 - MIR SINE MIR -69 139 10 820 335 67 23 chr3 6805384 6805859 -220718719 + L1ME4a LINE L1 5319 5814 -307 342 184 87 0 chr3 6805995 6806098 -220718480 + L1ME4a LINE L1 6008 6119 -2 517 269 60 7 chr3 6806482 6806631 -220717947 - MIR3 SINE MIR -15 193 37 524 251 134 67 chr3 6807033 6807256 -220717322 - MIR SINE MIR -1 261 24 384 273 132 57 chr3 6808138 6808365 -220716213 + L1ME LINE L1 5547 5790 -331 1708 171 10 3 chr3 6808478 6808776 -220715802 - AluJo SINE Alu -12 300 1 240 304 14 0 chr3 6809861 6809930 -220714648 - L2 LINE L2 -8 3264 3195 298 308 183 23 chr3 6810086 6810349 -220714229 - L2 LINE L2 -349 2965 2661 510 307 42 16 chr3 6811859 6812048 -220712530 + MIR SINE MIR 47 240 -22 1314 215 150 3 chr3 6812310 6812424 -220712154 - L1MC4 LINE L1 0 8042 7946 279 0 0 0 chr3 6812424 6812455 -220712123 + (CA)n Simple_repeat Simple_repeat 2 32 0 1314 215 150 3 chr3 6812455 6812888 -220711690 - L1MC4 LINE L1 -96 7946 7304 1436 159 4 17 chr3 6812888 6813127 -220711451 - AluSq SINE Alu -77 236 1 3541 217 114 31 chr3 6813127 6814093 -220710485 - L1MC4 LINE L1 -657 7385 6340 294 261 157 9 chr3 6814242 6814357 -220710221 - MIR SINE MIR -60 148 17 502 250 147 6 chr3 6815787 6815943 -220708635 - MER5A DNA MER1_type -3 186 9 309 260 114 16 chr3 6816311 6816434 -220708144 - MIR SINE MIR -113 149 15 297 230 135 48 chr3 6817894 6818020 -220706558 + MER117 DNA MER1_type 1 137 -60 264 282 19 19 chr3 6818465 6818568 -220706010 + MIR SINE MIR 36 138 -70 2153 141 34 44 chr3 6819814 6820225 -220704353 + L1MA4A LINE L1 5715 6121 -182 512 209 0 0 chr3 6820215 6820328 -220704250 + L1MA4A LINE L1 6044 6279 0 * 504 297 60 6 chr3 6820718 6820900 -220703678 - MIR SINE MIR -49 213 22 323 324 19 9 chr3 6824016 6824121 -220700457 + MIR3 SINE MIR 89 194 -14 1592 193 38 41 chr3 6825956 6826349 -220698229 - L1MC2 LINE L1 -5 6339 5948 2357 90 0 28 chr3 6826393 6826714 -220697864 - AluSx SINE Alu 0 312 1 357 132 0 0 chr3 6827531 6827570 -220697008 + (TC)n Simple_repeat Simple_repeat 1 42 -26 210 37 0 0 chr3 6827570 6827597 -220696981 + (CA)n Simple_repeat Simple_repeat 1 27 0 357 132 0 0 chr3 6827597 6827625 -220696953 + (TC)n Simple_repeat Simple_repeat 41 68 0 1471 118 113 17 chr3 6828846 6829084 -220695494 + AluSx SINE Alu 33 293 -19 274 333 42 33 chr3 6829469 6829589 -220694989 + L2 LINE L2 3151 3271 -1 1676 174 14 3 chr3 6830337 6830631 -220693947 - AluJo SINE Alu -15 297 1 202 267 0 0 chr3 6830658 6830703 -220693875 + L2 LINE L2 3182 3226 -87 183 245 20 0 chr3 6830742 6830791 -220693787 + L2 LINE L2 3204 3253 -60 740 225 116 0 chr3 6831789 6831962 -220692616 + MER58A DNA MER1_type 30 222 -2 1590 116 39 27 chr3 6832624 6832882 -220691696 + L1MB3 LINE L1 5923 6183 0 216 0 0 0 chr3 6833174 6833198 -220691380 + (T)n Simple_repeat Simple_repeat 1 24 0 408 303 8 16 chr3 6833841 6833963 -220690615 - L2 LINE L2 -1 3271 3151 2364 91 3 0 chr3 6835485 6835782 -220688796 + AluSp SINE Alu 2 299 -14 208 300 14 43 chr3 6835803 6835873 -220688705 - MIR3 SINE MIR -33 175 108 261 0 0 0 chr3 6836468 6836497 -220688081 + (T)n Simple_repeat Simple_repeat 1 29 0 428 302 37 135 chr3 6837898 6838246 -220686332 - L2 LINE L2 -1 3271 2958 2031 123 38 0 chr3 6838802 6839095 -220685483 - AluSx SINE Alu -8 304 1 189 0 0 0 chr3 6839513 6839534 -220685044 + (T)n Simple_repeat Simple_repeat 1 21 0 1096 174 56 0 chr3 6839869 6840047 -220684531 + MER5A DNA MER1_type 1 188 -1 1692 163 23 23 chr3 6840562 6840863 -220683715 - AluJb SINE Alu -11 301 1 271 279 123 0 chr3 6841444 6841566 -220683012 - MIR SINE MIR -27 235 99 23 0 0 0 chr3 6843903 6843926 -220680652 + AT_rich Low_complexity Low_complexity 1 23 0 270 185 46 46 chr3 6846272 6846337 -220678241 - MIR SINE MIR -63 145 81 251 397 64 14 chr3 6847838 6848057 -220676521 + MIR SINE MIR 2 231 -31 2126 148 0 0 chr3 6848403 6848706 -220675872 + AluSx SINE Alu 1 303 -9 4172 141 28 82 chr3 6848942 6849128 -220675450 + LTR39 LTR ERV1 1 195 -588 1709 138 0 4 chr3 6849128 6849454 -220675124 + AluJb SINE Alu 38 362 0 4172 141 28 82 chr3 6849454 6850083 -220674495 + LTR39 LTR ERV1 195 773 -10 193 305 51 76 chr3 6850676 6850728 -220673850 - MIR SINE MIR -58 150 98 2334 105 3 6 chr3 6850728 6851041 -220673537 + AluSp SINE Alu 1 312 -1 193 305 51 76 chr3 6851041 6851106 -220673472 - MIR SINE MIR -110 98 36 2706 134 38 14 chr3 6852040 6852458 -220672120 + MSTA LTR MaLR 1 428 0 881 233 61 5 chr3 6852458 6852733 -220671845 + L1MC/D LINE L1 5517 5810 -372 1798 149 41 17 chr3 6852996 6853440 -220671138 - MLT1D LTR MaLR 0 505 1 249 33 0 0 chr3 6853703 6853733 -220670845 + (CA)n Simple_repeat Simple_repeat 2 31 0 576 149 62 195 chr3 6853958 6854208 -220670370 - L1M4 LINE L1 -774 5372 5191 881 154 23 0 chr3 6854208 6854338 -220670240 - FLAM_C SINE Alu 0 133 1 576 149 62 195 chr3 6854338 6854476 -220670102 - L1M4 LINE L1 -955 5191 5036 933 184 0 26 chr3 6854476 6854666 -220669912 + MER3 DNA MER1_type 1 185 -24 1121 205 19 19 chr3 6854683 6854951 -220669627 - L1M4 LINE L1 -1103 5043 4776 810 208 0 0 chr3 6854958 6855107 -220669471 + L1MB1 LINE L1 4843 4991 -1155 312 140 0 0 chr3 6855107 6855157 -220669421 + FLAM_A SINE Alu 83 132 -1 708 173 0 0 chr3 6855159 6855269 -220669309 + AluJo/FRAM SINE Alu 201 310 -2 4940 146 26 57 chr3 6855271 6855629 -220668949 + L1MB1 LINE L1 4980 5347 -821 1868 164 0 16 chr3 6855629 6855934 -220668644 + AluJb SINE Alu 4 303 -9 4940 146 26 57 chr3 6855934 6856758 -220667820 + L1MB1 LINE L1 5347 6145 -23 8298 227 82 23 chr3 6856784 6857299 -220667279 - L1M4 LINE L1 -1379 4767 4283 2240 73 0 0 chr3 6857299 6857572 -220667006 - AluY SINE Alu -38 273 1 8298 227 82 23 chr3 6857572 6858204 -220666374 - L1M4 LINE L1 -1863 4283 3689 1673 180 3 40 chr3 6858204 6858526 -220666052 - AluJo SINE Alu -2 310 1 8298 227 82 23 chr3 6858526 6859816 -220664762 - L1M4 LINE L1 -2457 3689 2187 651 294 64 80 chr3 6860074 6860527 -220664051 + L2 LINE L2 2224 2669 -645 310 323 71 95 chr3 6860564 6860973 -220663605 + L2 LINE L2 2812 3210 -62 1488 131 57 4 chr3 6861849 6862093 -220662485 - Tigger2 DNA MER2_type 0 2718 2462 4203 108 49 88 chr3 6862136 6862910 -220661668 - Tigger2 DNA MER2_type -1974 744 1 360 244 94 131 chr3 6864791 6865196 -220659382 + L1M2 LINE L1 740 1129 -5720 2140 114 10 0 chr3 6865637 6865934 -220658644 - AluSx SINE Alu -12 300 1 1821 154 3 28 chr3 6865959 6866278 -220658300 - AluJo SINE Alu -1 311 1 2067 135 3 0 chr3 6867119 6867416 -220657162 - AluSx SINE Alu -14 298 1 275 326 122 7 chr3 6868473 6868620 -220655958 - MIR3 SINE MIR -21 187 24 388 241 169 42 chr3 6868706 6868872 -220655706 + MLT1H1 LTR MaLR 49 235 -320 1379 80 6 6 chr3 6868876 6869052 -220655526 + AluSp SINE Alu 1 176 -137 207 0 0 0 chr3 6869056 6869079 -220655499 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 2297 115 0 0 chr3 6869173 6869485 -220655093 - AluSx SINE Alu 0 312 1 289 196 0 0 chr3 6869495 6869546 -220655032 + MLT1H1 LTR MaLR 430 480 -75 274 295 0 0 chr3 6869823 6869884 -220654694 - MLT1G1 LTR MaLR 0 555 495 792 126 79 8 chr3 6869884 6870011 -220654567 - AluJo SINE Alu -175 137 2 835 234 128 95 chr3 6870011 6870527 -220654051 - MLT1G1 LTR MaLR -59 536 4 228 263 38 100 chr3 6872632 6872792 -220651786 + MIR SINE MIR 100 249 -13 * 441 268 180 3 chr3 6872774 6872947 -220651631 - MIR SINE MIR -49 213 19 2299 77 0 0 chr3 6873067 6873340 -220651238 + AluSc SINE Alu 25 297 -12 5625 29 0 0 chr3 6874118 6874731 -220649847 + L1PA3 LINE L1 5540 6152 -3 664 117 19 19 chr3 6875038 6875141 -220649437 - U13 snRNA snRNA -1 103 1 2223 122 0 0 chr3 6875571 6875866 -220648712 + AluSx SINE Alu 1 295 -17 216 0 0 0 chr3 6876064 6876088 -220648490 + (A)n Simple_repeat Simple_repeat 1 24 0 690 90 34 0 chr3 6876483 6876572 -220648006 - FLAM_C SINE Alu -26 117 26 331 313 96 72 chr3 6878324 6878825 -220645753 + L1MC4a LINE L1 4810 5322 -824 1072 228 153 50 chr3 6878856 6879313 -220645265 + L1MC4a LINE L1 5437 5940 -1868 1820 175 6 19 chr3 6879411 6879725 -220644853 + AluJb SINE Alu 1 310 -2 273 253 82 123 chr3 6880648 6880794 -220643784 + L2 LINE L2 3133 3272 0 297 140 40 0 chr3 6882319 6882369 -220642209 + FLAM SINE Alu 78 129 -4 207 383 103 3 chr3 6882671 6882961 -220641617 + L2 LINE L2 2331 2649 -665 1891 149 20 0 chr3 6882985 6883281 -220641297 - AluJb SINE Alu -10 302 1 225 350 137 38 chr3 6883500 6883814 -220640764 + L2 LINE L2 2928 3272 0 27 62 0 0 chr3 6884149 6884197 -220640381 + AT_rich Low_complexity Low_complexity 1 48 0 1589 187 32 18 chr3 6884377 6884655 -220639923 + AluJo SINE Alu 1 282 -30 398 270 22 58 chr3 6884672 6884809 -220639769 - MER5A DNA MER1_type -49 140 9 208 234 0 43 chr3 6884804 6884851 -220639727 - L3 LINE CR1 -17 1560 1516 * 283 274 53 32 chr3 6884853 6884948 -220639630 + MER5A DNA MER1_type 74 170 -19 194 311 66 57 chr3 6884854 6884976 -220639602 - MER5A DNA MER1_type -63 126 4 * 2518 211 29 49 chr3 6885058 6885607 -220638971 + MLT1F LTR MaLR 5 542 0 587 288 27 68 chr3 6886987 6887169 -220637409 + MIR SINE MIR 14 187 -75 2174 111 16 7 chr3 6887169 6887476 -220637102 + AluSx SINE Alu 1 310 -2 587 288 27 68 chr3 6887476 6887515 -220637063 + MIR SINE MIR 187 226 -36 813 170 0 15 chr3 6888346 6888481 -220636097 + FLAM_C SINE Alu 1 133 0 483 281 98 41 chr3 6888816 6889304 -220635274 + L1M4 LINE L1 4487 5002 -1144 1866 117 38 0 chr3 6889424 6889690 -220634888 + AluSq SINE Alu 1 276 -37 5862 89 11 39 chr3 6889735 6890613 -220633965 + L1PA14 LINE L1 5308 6161 0 573 189 53 95 chr3 6890794 6890819 -220633759 + MER58B DNA MER1_type 180 204 -2216 2069 142 0 13 chr3 6890819 6891128 -220633450 + AluSx SINE Alu 2 306 -6 573 189 53 95 chr3 6891128 6891271 -220633307 + MER58B DNA MER1_type 204 341 0 1393 242 79 12 chr3 6891312 6891789 -220632789 + MLT1E LTR MaLR 55 593 0 1926 120 11 14 chr3 6891905 6892268 -220632310 + AluSx SINE Alu 2 363 0 622 252 68 68 chr3 6892315 6892543 -220632035 + MLT1L LTR MaLR 327 557 -58 917 229 88 5 chr3 6892543 6892748 -220631830 + MER58A DNA MER1_type 2 223 -1 622 252 68 68 chr3 6892748 6892797 -220631781 + MLT1L LTR MaLR 556 604 -11 2009 171 16 30 chr3 6892867 6893235 -220631343 - MLT1A1 LTR MaLR -2 363 1 1801 205 123 30 chr3 6893262 6893759 -220630819 - L1ME3A LINE L1 -10 6160 5618 2275 102 0 3 chr3 6893871 6894166 -220630412 + AluSx SINE Alu 1 294 -18 1920 140 48 0 chr3 6894175 6894468 -220630110 + AluSx SINE Alu 1 307 -5 210 143 0 0 chr3 6894468 6894503 -220630075 + (GA)n Simple_repeat Simple_repeat 1 35 0 288 111 0 0 chr3 6895397 6895442 -220629136 + (GA)n Simple_repeat Simple_repeat 2 46 0 439 280 21 21 chr3 6896145 6896288 -220628290 - MIR SINE MIR -82 180 38 618 163 162 23 chr3 6897035 6897194 -220627384 - MER58C DNA MER1_type 0 215 31 1705 136 41 14 chr3 6897596 6897890 -220626688 - AluJb SINE Alu -10 302 1 2191 93 21 0 chr3 6898048 6898328 -220626250 + AluSc SINE Alu 8 293 -16 1196 164 0 29 chr3 6899073 6899281 -220625297 + AluJo SINE Alu 83 284 -28 441 0 0 0 chr3 6899285 6899334 -220625244 + (GA)n Simple_repeat Simple_repeat 2 50 0 29 60 0 0 chr3 6899358 6899408 -220625170 + AT_rich Low_complexity Low_complexity 1 50 0 313 149 27 54 chr3 6899763 6899837 -220624741 - MER116 DNA Mariner 0 80 9 630 214 0 0 chr3 6900142 6900245 -220624333 - FLAM_A SINE Alu -36 106 4 343 259 37 44 chr3 6900333 6900352 -220624226 - MIR SINE MIR 0 262 244 1294 160 173 30 chr3 6900352 6900652 -220623926 + MER2 DNA MER2_type 2 344 0 343 259 37 44 chr3 6900652 6900767 -220623811 - MIR SINE MIR -18 244 129 233 296 68 0 chr3 6901003 6901091 -220623487 + MIR SINE MIR 84 177 -85 1880 170 0 3 chr3 6902136 6902447 -220622131 + AluJb SINE Alu 1 310 -2 254 288 0 0 chr3 6903214 6903280 -220621298 + (TA)n Simple_repeat Simple_repeat 1 66 0 1721 169 10 23 chr3 6903293 6903601 -220620977 - AluJo SINE Alu -8 304 1 214 313 40 30 chr3 6904464 6904563 -220620015 - MIR SINE MIR -64 144 45 472 291 86 29 chr3 6905075 6905250 -220619328 + MIR3 SINE MIR 16 200 -8 282 287 21 11 chr3 6905505 6905599 -220618979 - MLT1K LTR MaLR -36 552 458 257 270 108 0 chr3 6905744 6905855 -220618723 - MLT1L LTR MaLR -310 305 183 227 241 37 0 chr3 6905894 6905948 -220618630 - MLT1L LTR MaLR -418 197 142 195 42 0 0 chr3 6906135 6906159 -220618419 + (GAATG)n Simple_repeat Simple_repeat 2 25 0 182 246 311 16 chr3 6906987 6907048 -220617530 - L2 LINE L2 -87 3185 3107 1985 38 0 0 chr3 6907165 6907404 -220617174 - L1P LINE L1 -1626 4520 4282 242 303 53 13 chr3 6907448 6907524 -220617054 - L2 LINE L2 -200 3072 2994 2020 135 7 0 chr3 6908882 6909186 -220615392 + AluSx SINE Alu 5 310 -2 2078 117 85 70 chr3 6909480 6909519 -220615059 - MSTA LTR MaLR 0 428 391 2268 103 3 3 chr3 6909519 6909820 -220614758 + AluSx SINE Alu 1 301 -11 2078 117 85 70 chr3 6909820 6909854 -220614724 - MSTA LTR MaLR -37 391 359 2104 131 0 3 chr3 6909854 6910144 -220614434 + AluSx SINE Alu 1 289 -23 2078 117 85 70 chr3 6910144 6910481 -220614097 - MSTA LTR MaLR -69 359 11 856 257 10 10 chr3 6911353 6911559 -220613019 - MLT1A1 LTR MaLR 0 365 160 2224 121 0 0 chr3 6911579 6911877 -220612701 - AluSx SINE Alu -14 298 1 448 52 0 17 chr3 6911877 6911935 -220612643 - MSTC LTR MaLR -371 57 1 2566 115 54 79 chr3 6912068 6912344 -220612234 - MLT1C LTR MaLR 0 467 207 1549 178 3 53 chr3 6912344 6912665 -220611913 - AluJo SINE Alu -7 305 1 2566 115 54 79 chr3 6912665 6912867 -220611711 - MLT1C LTR MaLR -260 207 1 31593 29 12 1 chr3 6913079 6919112 -220605466 + L1HS LINE L1 1 6155 0 24 0 0 0 chr3 6919112 6919136 -220605442 + AT_rich Low_complexity Low_complexity 1 24 0 441 246 84 26 chr3 6919188 6919342 -220605236 - MIR3 SINE MIR -1 207 37 594 274 50 50 chr3 6919655 6920228 -220604350 + L1MC5 LINE L1 7249 7739 -222 441 137 0 0 chr3 6920245 6920318 -220604260 + L1PB4 LINE L1 6070 6142 -14 805 172 0 0 chr3 6920330 6920458 -220604120 + FLAM_C SINE Alu 1 128 -5 311 257 125 14 chr3 6920478 6920622 -220603956 + L1MC4 LINE L1 7878 8037 -5 279 0 0 0 chr3 6920712 6920743 -220603835 + (TTTC)n Simple_repeat Simple_repeat 2 32 0 2381 101 0 3 chr3 6920753 6921061 -220603517 - AluSg SINE Alu -3 307 1 351 249 26 74 chr3 6921191 6921380 -220603198 + L1MC4a LINE L1 5750 5929 -1879 2366 189 37 2 chr3 6921448 6921967 -220602611 + L1MB7 LINE L1 4012 4548 -1598 868 123 23 8 chr3 6921973 6922103 -220602475 - FLAM_C SINE Alu -11 132 1 3907 183 56 46 chr3 6922106 6923737 -220600841 + L1MB7 LINE L1 4542 6179 -5 360 0 0 0 chr3 6924309 6924349 -220600229 + (TG)n Simple_repeat Simple_repeat 1 40 0 216 97 0 0 chr3 6924349 6924380 -220600198 + (GA)n Simple_repeat Simple_repeat 2 32 0 423 192 135 16 chr3 6925002 6925168 -220599410 - MLT1H LTR MaLR -8 547 346 2173 109 10 0 chr3 6925293 6925596 -220598982 - AluY SINE Alu -5 306 1 2208 218 25 25 chr3 6926287 6926592 -220597986 - L1MB8 LINE L1 -9 6169 5862 1995 127 39 0 chr3 6926592 6926876 -220597702 - AluJb SINE Alu -17 295 1 2208 218 25 25 chr3 6926876 6927177 -220597401 - L1MB8 LINE L1 -315 5863 5563 1319 241 129 33 chr3 6928028 6928579 -220595999 + L1MC4 LINE L1 7160 7763 -279 733 194 0 15 chr3 6928586 6928720 -220595858 + FLAM_C SINE Alu 2 133 0 234 91 0 0 chr3 6928864 6928897 -220595681 + (A)n Simple_repeat Simple_repeat 1 33 0 348 202 106 0 chr3 6928898 6928992 -220595586 + L1MD3 LINE L1 7883 7986 -9 1482 144 53 46 chr3 6929008 6929292 -220595286 + AluJb SINE Alu 1 286 -26 270 115 0 0 chr3 6929292 6929344 -220595234 + (CATA)n Simple_repeat Simple_repeat 4 55 0 567 261 26 53 chr3 6929354 6929580 -220594998 + L1ME3 LINE L1 5936 6155 -7 2337 97 0 0 chr3 6929999 6930298 -220594280 + AluSc SINE Alu 1 299 -10 180 111 0 0 chr3 6930408 6930435 -220594143 + (TTCC)n Simple_repeat Simple_repeat 2 28 0 565 174 147 0 chr3 6930563 6930672 -220593906 + FLAM_A SINE Alu 1 125 -8 611 258 32 81 chr3 6930732 6930980 -220593598 + MLT1J LTR MaLR 236 471 -40 2109 159 46 7 chr3 6931072 6931511 -220593067 + L1MB3 LINE L1 5725 6180 -3 40 0 0 0 chr3 6931512 6931552 -220593026 + AT_rich Low_complexity Low_complexity 1 40 0 2143 134 0 0 chr3 6931558 6931864 -220592714 + AluSx SINE Alu 1 306 -6 1126 261 90 23 chr3 6931872 6932437 -220592141 + L2 LINE L2 2712 3311 -2 294 293 116 56 chr3 6933343 6933575 -220591003 - L2 LINE L2 -882 2432 2187 805 309 91 40 chr3 6933624 6934268 -220590310 + L2 LINE L2 2606 3280 -33 27 62 0 0 chr3 6934281 6934329 -220590249 + AT_rich Low_complexity Low_complexity 1 48 0 568 328 76 4 chr3 6934419 6934681 -220589897 - L2 LINE L2 -1163 2151 1871 417 221 265 52 chr3 6934824 6934960 -220589618 - MLT1H LTR MaLR -17 532 361 799 251 5 10 chr3 6934964 6935159 -220589419 - MER58A DNA MER1_type 0 224 31 393 245 108 57 chr3 6935219 6935466 -220589112 - MLT1H LTR MaLR -217 332 31 2381 82 0 22 chr3 6935641 6935956 -220588622 + AluSq SINE Alu 1 308 -5 2257 130 0 9 chr3 6936564 6936879 -220587699 + AluSq SINE Alu 1 312 -1 943 172 18 0 chr3 6936892 6937055 -220587523 + FAM SINE Alu 1 166 -9 856 164 0 8 chr3 6937301 6937435 -220587143 + FLAM_A SINE Alu 1 133 0 1824 158 3 3 chr3 6937633 6937924 -220586654 + AluJb SINE Alu 1 291 -21 1273 321 60 23 chr3 6937938 6939560 -220585018 + L1M4 LINE L1 2938 4618 -1528 507 202 0 0 chr3 6939577 6939701 -220584877 + (CATATA)n Simple_repeat Simple_repeat 2 125 0 24 53 0 0 chr3 6939709 6939747 -220584831 + AT_rich Low_complexity Low_complexity 1 38 0 276 159 57 0 chr3 6939750 6939838 -220584740 + (TATATG)n Simple_repeat Simple_repeat 4 96 0 241 265 15 0 chr3 6939850 6939982 -220584596 + (TA)n Simple_repeat Simple_repeat 1 134 0 329 343 79 6 chr3 6940008 6940186 -220584392 + L1M4 LINE L1 4672 4862 -1284 1183 192 76 10 chr3 6940186 6940477 -220584101 - L1MC/D LINE L1 -2150 5658 5349 937 218 56 53 chr3 6940482 6940840 -220583738 - L1ME2 LINE L1 0 6164 5806 3238 230 100 72 chr3 6940886 6941967 -220582611 + L1MC4 LINE L1 6502 7551 -491 2002 127 7 13 chr3 6941967 6942267 -220582311 + AluJb SINE Alu 1 298 -14 3238 230 100 72 chr3 6942267 6942467 -220582111 + L1MC4 LINE L1 7551 7744 -298 2287 65 41 0 chr3 6942467 6942757 -220581821 - AluY SINE Alu -9 302 1 3238 230 100 72 chr3 6942757 6942973 -220581605 + L1MC4 LINE L1 7744 8042 0 1238 149 159 62 chr3 6942980 6943256 -220581322 - AluJo SINE Alu -9 303 1 513 249 60 55 chr3 6943495 6943696 -220580882 + MLT1K LTR MaLR 44 245 -343 423 0 0 0 chr3 6943736 6943783 -220580795 + (TTTA)n Simple_repeat Simple_repeat 2 48 0 314 261 153 51 chr3 6944165 6944322 -220580256 - MER5A DNA MER1_type 0 189 17 1712 159 10 20 chr3 6944670 6944965 -220579613 - AluJo SINE Alu -20 292 1 489 51 20 41 chr3 6945009 6945107 -220579471 + (TG)n Simple_repeat Simple_repeat 2 97 0 427 299 25 25 chr3 6945255 6945412 -220579166 - MIR SINE MIR -1 261 105 264 246 65 58 chr3 6945518 6945656 -220578922 - L2 LINE L2 -4 3309 3171 1583 186 17 7 chr3 6945661 6945962 -220578616 + AluJo SINE Alu 1 304 -8 216 292 258 0 chr3 6946070 6946159 -220578419 + L2 LINE L2 3201 3312 -1 378 200 51 131 chr3 6946400 6946575 -220578003 + MER103 DNA DNA 3 163 -3 493 257 138 0 chr3 6946619 6946771 -220577807 - MER96 DNA MER1_type 0 175 3 2078 150 0 10 chr3 6947115 6947429 -220577149 - AluSx SINE Alu -1 311 1 196 254 153 0 chr3 6947478 6947537 -220577041 + L2 LINE L2 3246 3313 0 2108 101 4 0 chr3 6947892 6948169 -220576409 - AluSx SINE Alu -2 310 33 1507 46 10 15 chr3 6948214 6948411 -220576167 - MER107 DNA MER1_type 0 197 2 2344 84 0 0 chr3 6948489 6948785 -220575793 - AluSx SINE Alu -16 296 1 699 337 112 9 chr3 6950296 6950724 -220573854 + L2 LINE L2 2808 3287 -26 1478 199 56 11 chr3 6950724 6951081 -220573497 + MLT1A2 LTR MaLR 1 373 -1 699 337 112 9 chr3 6951081 6951109 -220573469 + L2 LINE L2 3287 3311 -2 253 116 23 0 chr3 6951504 6951547 -220573031 - MER4E LTR ERV1 -96 670 627 2193 89 0 3 chr3 6951564 6951868 -220572710 - L1PB1 LINE L1 -1 6150 5848 474 276 31 10 chr3 6952196 6952363 -220572215 - MIR SINE MIR -2 260 91 2317 113 0 0 chr3 6952375 6952677 -220571901 + AluSx SINE Alu 1 302 -10 226 207 17 52 chr3 6952953 6953011 -220571567 + L2 LINE L2 3217 3272 0 414 231 208 31 chr3 6953937 6954067 -220570511 + MER5A DNA MER1_type 36 188 -1 330 26 0 0 chr3 6954214 6954253 -220570325 + (TG)n Simple_repeat Simple_repeat 1 39 0 431 306 80 17 chr3 6954479 6954780 -220569798 + L1ME2 LINE L1 81 400 -6023 1577 244 58 87 chr3 6955141 6956120 -220568458 + L1ME2 LINE L1 1156 2162 -4779 2399 86 0 3 chr3 6956120 6956424 -220568154 + AluSg SINE Alu 1 303 -7 1577 244 58 87 chr3 6956424 6956601 -220567977 + L1ME2 LINE L1 2162 2343 -4598 2239 118 7 0 chr3 6956601 6956906 -220567672 + AluSx SINE Alu 1 307 -5 2435 99 0 0 chr3 6956906 6957219 -220567359 + AluSp SINE Alu 1 313 0 1577 244 58 87 chr3 6957219 6957513 -220567065 + L1ME2 LINE L1 2342 2643 -4298 847 257 5 0 chr3 6957513 6957700 -220566878 + MER5A DNA MER1_type 2 189 0 1577 244 58 87 chr3 6957700 6957785 -220566793 + L1ME2 LINE L1 2643 2729 -4212 1936 163 0 3 chr3 6957785 6958098 -220566480 + AluSx SINE Alu 1 312 0 823 159 0 0 chr3 6958108 6958234 -220566344 + FLAM_C SINE Alu 1 126 -7 1577 244 58 87 chr3 6958234 6958468 -220566110 + L1ME2 LINE L1 2738 2977 -3964 1681 157 82 0 chr3 6958468 6958748 -220565830 + AluJo SINE Alu 1 303 -9 1577 244 58 87 chr3 6958748 6958967 -220565611 + L1ME2 LINE L1 2977 3201 -3740 2342 112 3 0 chr3 6958967 6959279 -220565299 + AluSp SINE Alu 1 313 0 1577 244 58 87 chr3 6959279 6959326 -220565252 + L1ME2 LINE L1 3201 3248 -3693 1657 194 3 46 chr3 6959326 6959651 -220564927 + AluJo SINE Alu 1 311 -1 1577 244 58 87 chr3 6959651 6959925 -220564653 + L1ME2 LINE L1 3248 3569 -3372 333 191 4 2 chr3 6959927 6960184 -220564394 + AluJo SINE Alu 1 300 -2 547 188 8 29 chr3 6960224 6960390 -220564188 + L1MD2 LINE L1 5423 5573 -610 186 43 0 0 chr3 6960824 6960847 -220563731 + (TAAA)n Simple_repeat Simple_repeat 3 25 0 1693 198 21 5 chr3 6960847 6961221 -220563357 + L1MD2 LINE L1 5556 5935 -307 720 157 22 22 chr3 6961240 6961374 -220563204 - AluJo SINE Alu -178 134 1 1710 189 28 46 chr3 6961374 6961781 -220562797 + L1MD2 LINE L1 5922 6322 -37 1777 171 7 11 chr3 6961781 6962067 -220562511 - AluJb SINE Alu -27 285 1 1710 189 28 46 chr3 6962067 6962092 -220562486 + L1MD2 LINE L1 6322 6346 -13 510 240 21 10 chr3 6962095 6962287 -220562291 + L1ME2 LINE L1 3633 3826 -3115 26924 62 4 6 chr3 6962307 6968464 -220556114 + L1PA4 LINE L1 11 6155 0 1293 279 95 2 chr3 6968470 6969048 -220555530 + L1ME2 LINE L1 3824 4455 -2486 3358 235 73 29 chr3 6969054 6969557 -220555021 + L1ME2 LINE L1 4940 5419 -1540 1760 114 38 0 chr3 6969557 6969821 -220554757 - AluSx SINE Alu -21 291 18 3358 235 73 29 chr3 6969821 6971250 -220553328 + L1ME2 LINE L1 5419 6959 0 186 291 236 31 chr3 6971310 6971437 -220553141 + L3 LINE CR1 554 706 -871 1141 121 0 0 chr3 6971496 6971662 -220552916 - AluSg/x SINE Alu -9 303 138 534 111 12 12 chr3 6971762 6971843 -220552735 - AluY SINE Alu -233 85 5 517 260 52 19 chr3 6971853 6972007 -220552571 - MER112 DNA MER1_type -12 248 90 2008 135 0 16 chr3 6972025 6972337 -220552241 - AluSq SINE Alu -6 307 1 282 222 16 0 chr3 6972505 6972568 -220552010 - MER112 DNA MER1_type -187 73 10 402 252 53 8 chr3 6972835 6972966 -220551612 - MER91C DNA MER1_type 0 140 4 409 267 79 43 chr3 6972969 6973138 -220551440 + MIR SINE MIR 8 191 -17 207 302 79 0 chr3 6973104 6973167 -220551411 + L2 LINE L2 3242 3309 -4 * 231 277 12 48 chr3 6973155 6973238 -220551340 + MIR SINE MIR 134 213 -49 200 292 219 10 chr3 6974623 6974719 -220549859 + L2 LINE L2 3155 3270 -2 274 181 74 44 chr3 6975712 6975815 -220548763 - MIR SINE MIR -61 147 63 187 315 81 54 chr3 6975968 6976079 -220548499 + L2 LINE L2 3150 3263 -9 553 220 91 102 chr3 6976083 6976218 -220548360 - MIR SINE MIR 0 262 130 1629 129 70 22 chr3 6976218 6976489 -220548089 - AluJo SINE Alu -28 284 1 553 220 91 102 chr3 6976489 6976617 -220547961 - MIR SINE MIR -132 130 2 779 178 0 30 chr3 6977690 6977825 -220546753 - FLAM_C SINE Alu -2 131 1 769 231 98 31 chr3 6977855 6978080 -220546498 - MIR SINE MIR -20 242 3 517 225 0 45 chr3 6978130 6978241 -220546337 - L2 LINE L2 0 3313 3208 260 238 0 165 chr3 6978146 6978310 -220546268 - MIR SINE MIR -10 252 116 * 474 300 0 0 chr3 6978375 6978485 -220546093 - L2 LINE L2 -10 3262 3153 823 164 7 26 chr3 6978749 6978901 -220545677 + AluJb SINE Alu 140 288 -24 306 291 74 3 chr3 6978920 6979035 -220545543 + MIR3 SINE MIR 75 194 -54 384 152 15 0 chr3 6979261 6979327 -220545251 + L1MEc LINE L1 37 103 -6293 * 414 265 8 17 chr3 6979326 6979443 -220545135 + L1MEc LINE L1 706 821 -5575 644 203 0 31 chr3 6979457 6979585 -220544993 + L2 LINE L2 3190 3313 0 644 221 177 6 chr3 6980258 6980439 -220544139 + MIR SINE MIR 14 225 -37 391 290 60 0 chr3 6980507 6980607 -220543971 + MIR SINE MIR 39 144 -64 368 270 34 0 chr3 6980610 6980699 -220543879 + L2 LINE L2 3195 3286 -27 886 172 5 106 chr3 6980710 6980787 -220543791 - MER45A DNA AcHobo -1403 178 95 2356 85 3 0 chr3 6980787 6981093 -220543485 + AluSg SINE Alu 1 307 -3 886 172 5 106 chr3 6981093 6981107 -220543471 - MER45A DNA AcHobo -1486 95 81 2162 106 7 3 chr3 6981107 6981410 -220543168 + AluSp SINE Alu 1 304 -9 886 172 5 106 chr3 6981410 6981515 -220543063 - MER45A DNA AcHobo -1500 81 1 300 289 26 26 chr3 6981515 6981629 -220542949 + MIR SINE MIR 149 262 0 204 225 99 84 chr3 6981627 6981698 -220542880 - MIR SINE MIR -66 196 125 * 916 98 0 0 chr3 6981714 6981837 -220542741 + FLAM_C SINE Alu 1 123 -20 361 281 114 23 chr3 6982299 6982556 -220542022 + L2 LINE L2 2774 3052 -261 879 134 0 0 chr3 6982557 6982684 -220541894 + FLAM_C SINE Alu 1 127 -16 226 358 0 0 chr3 6982887 6982954 -220541624 + L2 LINE L2 3204 3270 -2 220 311 68 0 chr3 6982963 6983037 -220541541 + MIR SINE MIR 75 153 -55 2110 107 0 0 chr3 6983049 6983338 -220541240 - AluSx SINE Alu -6 306 18 240 209 0 0 chr3 6983391 6983434 -220541144 - L2 LINE L2 -19 3294 3252 2017 144 0 0 chr3 6983659 6983971 -220540607 + AluJb SINE Alu 1 312 0 782 154 0 29 chr3 6984535 6984671 -220539907 - FLAM_C SINE Alu 0 133 2 1833 153 3 19 chr3 6984749 6985056 -220539522 + AluJb SINE Alu 1 302 -10 22 0 0 0 chr3 6985061 6985083 -220539495 + AT_rich Low_complexity Low_complexity 1 22 0 1993 115 28 0 chr3 6985193 6985481 -220539097 + AluSx SINE Alu 1 296 -16 1962 144 100 19 chr3 6985750 6986111 -220538467 - MLT1B LTR MaLR 0 390 1 264 261 59 34 chr3 6986203 6986322 -220538256 + L2 LINE L2 3173 3294 -19 1971 98 41 10 chr3 6986413 6986708 -220537870 - AluSg SINE Alu -6 304 1 384 234 36 7 chr3 6986787 6986924 -220537654 + L1MC4 LINE L1 7902 8042 0 1213 149 160 62 chr3 6986932 6987207 -220537371 - AluJo SINE Alu 0 302 1 605 249 60 55 chr3 6987446 6987647 -220536931 + MLT1K LTR MaLR 44 245 -343 423 0 0 0 chr3 6987687 6987734 -220536844 + (TTTA)n Simple_repeat Simple_repeat 2 48 0 328 261 153 51 chr3 6988116 6988273 -220536305 - MER5A DNA MER1_type 0 189 17 1606 159 10 20 chr3 6988621 6988916 -220535662 - AluJo SINE Alu -20 292 1 489 51 20 41 chr3 6988960 6989058 -220535520 + (TG)n Simple_repeat Simple_repeat 2 97 0 441 294 31 25 chr3 6989206 6989366 -220535212 - MIR SINE MIR -1 261 101 263 246 65 58 chr3 6989469 6989607 -220534971 - L2 LINE L2 -4 3309 3171 1475 186 17 7 chr3 6989612 6989913 -220534665 + AluJo SINE Alu 1 304 -8 224 292 258 0 chr3 6990021 6990110 -220534468 + L2 LINE L2 3201 3312 -1 422 200 51 131 chr3 6990351 6990526 -220534052 + MER103 DNA DNA 3 163 -3 512 257 138 0 chr3 6990570 6990722 -220533856 - MER96 DNA MER1_type 0 175 3 1960 150 0 10 chr3 6991066 6991380 -220533198 - AluSx SINE Alu -1 311 1 196 254 153 0 chr3 6991429 6991488 -220533090 + L2 LINE L2 3246 3313 0 2006 101 4 0 chr3 6991843 6992120 -220532458 - AluSx SINE Alu -2 310 33 1537 46 10 15 chr3 6992165 6992362 -220532216 - MER107 DNA MER1_type 0 197 2 2250 84 0 0 chr3 6992440 6992736 -220531842 - AluSx SINE Alu -16 296 1 743 324 107 9 chr3 6994235 6994675 -220529903 + L2 LINE L2 2797 3287 -26 1540 202 56 11 chr3 6994675 6995032 -220529546 + MLT1A2 LTR MaLR 1 373 -1 743 324 107 9 chr3 6995032 6995060 -220529518 + L2 LINE L2 3287 3311 -2 279 116 23 0 chr3 6995455 6995498 -220529080 - MER4E LTR ERV1 -96 670 627 2240 89 0 3 chr3 6995515 6995819 -220528759 - L1PB1 LINE L1 -1 6150 5848 483 281 31 10 chr3 6996147 6996314 -220528264 - MIR SINE MIR -2 260 91 2198 113 0 0 chr3 6996326 6996628 -220527950 + AluSx SINE Alu 1 302 -10 224 207 17 52 chr3 6996904 6996962 -220527616 + L2 LINE L2 3217 3272 0 414 231 208 31 chr3 6997888 6998018 -220526560 + MER5A DNA MER1_type 36 188 -1 330 26 0 0 chr3 6998165 6998204 -220526374 + (TG)n Simple_repeat Simple_repeat 1 39 0 505 307 83 17 chr3 6998430 6998730 -220525848 + L1MCc LINE L1 81 400 -6023 1564 248 63 99 chr3 6999051 7000070 -220524508 + L1MCc LINE L1 1114 2167 -4774 2292 86 0 3 chr3 7000070 7000374 -220524204 + AluSg SINE Alu 1 303 -7 1564 248 63 99 chr3 7000374 7000551 -220524027 + L1MCc LINE L1 2167 2349 -4592 2114 118 7 0 chr3 7000551 7000856 -220523722 + AluSx SINE Alu 1 307 -5 2319 99 0 0 chr3 7000856 7001169 -220523409 + AluSp SINE Alu 1 313 0 1564 248 63 99 chr3 7001169 7001463 -220523115 + L1MCc LINE L1 2348 2651 -4290 839 257 5 0 chr3 7001463 7001650 -220522928 + MER5A DNA MER1_type 2 189 0 1564 248 63 99 chr3 7001650 7001735 -220522843 + L1MCc LINE L1 2651 2737 -4204 1816 163 0 3 chr3 7001735 7002048 -220522530 + AluSx SINE Alu 1 312 0 827 159 0 0 chr3 7002058 7002184 -220522394 + FLAM_C SINE Alu 1 126 -7 1564 248 63 99 chr3 7002184 7002418 -220522160 + L1MCc LINE L1 2746 2987 -3954 1572 157 82 0 chr3 7002418 7002698 -220521880 + AluJo SINE Alu 1 303 -9 1564 248 63 99 chr3 7002698 7002917 -220521661 + L1MCc LINE L1 2987 3257 -3684 2221 107 3 0 chr3 7002917 7003225 -220521353 + AluSp SINE Alu 1 309 -4 1564 248 63 99 chr3 7003225 7003265 -220521313 + L1MCc LINE L1 3257 3297 -3644 577 205 9 18 chr3 7003278 7003390 -220521188 + FLAM_C SINE Alu 3 113 -30 185 0 40 0 chr3 7005222 7005247 -220519331 + (TA)n Simple_repeat Simple_repeat 1 26 0 * 297 0 0 0 chr3 7005246 7005279 -220519299 + (CA)n Simple_repeat Simple_repeat 2 34 0 273 234 9 72 chr3 7006575 7006686 -220517892 + L1ME LINE L1 5725 5828 -293 318 167 0 0 chr3 7007891 7007951 -220516627 + (TG)n Simple_repeat Simple_repeat 2 61 0 33 0 0 0 chr3 7008972 7009005 -220515573 + AT_rich Low_complexity Low_complexity 1 33 0 26 0 0 0 chr3 7009827 7009853 -220514725 + AT_rich Low_complexity Low_complexity 1 26 0 390 229 0 0 chr3 7011419 7011502 -220513076 - MIR SINE MIR -101 161 79 791 261 81 5 chr3 7011664 7011886 -220512692 - MIR SINE MIR -22 240 2 208 304 128 16 chr3 7011929 7012054 -220512524 - MIR SINE MIR 0 262 124 363 284 0 0 chr3 7012066 7012147 -220512431 - MIR SINE MIR -63 145 65 316 301 62 9 chr3 7012200 7012313 -220512265 - MIR SINE MIR -54 208 90 2034 109 10 0 chr3 7012503 7012796 -220511782 + AluJb SINE Alu 1 296 -16 183 80 0 0 chr3 7012911 7012936 -220511642 + (GGGA)n Simple_repeat Simple_repeat 2 26 0 22 35 0 0 chr3 7014062 7014091 -220510487 + AT_rich Low_complexity Low_complexity 1 29 0 4073 175 32 28 chr3 7014119 7014965 -220509613 + L1MB5 LINE L1 5314 6166 -8 987 148 37 70 chr3 7014977 7015221 -220509357 - L1MC5 LINE L1 -68 7893 7658 2229 87 7 0 chr3 7015313 7015612 -220508966 + AluSg SINE Alu 1 301 -9 1607 171 32 4 chr3 7015730 7016010 -220508568 + AluJo SINE Alu 1 288 -24 1054 291 74 3 chr3 7016075 7016412 -220508166 - L1MC4a LINE L1 -1865 5943 5583 291 242 55 11 chr3 7016459 7016550 -220508028 + L1MC4a LINE L1 5560 5654 -467 33 0 0 0 chr3 7016555 7016588 -220507990 + AT_rich Low_complexity Low_complexity 1 33 0 750 171 0 0 chr3 7016588 7016705 -220507873 - FLAM_C SINE Alu -25 118 2 215 267 0 0 chr3 7016782 7016827 -220507751 + polypurine Low_complexity Low_complexity 4 48 0 306 303 127 42 chr3 7016846 7017011 -220507567 + L1MC4a LINE L1 5755 5933 -1875 458 211 65 16 chr3 7017033 7017156 -220507422 + MIR SINE MIR 110 238 -24 235 223 72 72 chr3 7017204 7017370 -220507208 + L1ME4a LINE L1 5943 6108 -13 228 356 104 0 chr3 7017675 7017790 -220506788 + L2 LINE L2 3146 3272 0 417 245 61 49 chr3 7017803 7017966 -220506612 + MIR SINE MIR 80 244 -18 974 167 88 21 chr3 7017993 7018185 -220506393 + AluJo SINE Alu 87 291 -21 34 24 0 0 chr3 7018186 7018227 -220506351 + AT_rich Low_complexity Low_complexity 1 41 0 291 114 0 0 chr3 7018337 7018381 -220506197 + (CA)n Simple_repeat Simple_repeat 1 44 0 195 237 0 0 chr3 7018433 7018471 -220506107 - L2 LINE L2 -34 3279 3242 462 236 24 8 chr3 7018483 7018606 -220505972 - MIR SINE MIR -115 147 23 339 290 46 100 chr3 7020065 7020324 -220504254 - L2 LINE L2 0 3272 3028 1985 183 41 31 chr3 7020355 7020771 -220503807 + MLT1C LTR MaLR 44 463 -4 228 263 71 30 chr3 7020774 7020873 -220503705 - L2 LINE L2 -345 2969 2867 2486 49 0 16 chr3 7021469 7021776 -220502802 - AluY SINE Alu -9 302 1 229 136 0 169 chr3 7021828 7021887 -220502691 + MLT1K LTR MaLR 201 249 -339 1476 186 13 68 chr3 7022698 7023005 -220501573 + AluJb SINE Alu 1 290 -22 476 264 21 7 chr3 7023338 7023478 -220501100 - MIR SINE MIR -48 214 73 1090 101 0 0 chr3 7023536 7023684 -220500894 - Tigger7 DNA MER2_type -1 2486 2339 344 171 100 0 chr3 7023703 7023773 -220500805 - Tigger7 DNA MER2_type -473 77 1 368 259 168 0 chr3 7023970 7024113 -220500465 + MIR3 SINE MIR 38 204 -4 1998 104 45 3 chr3 7024431 7024720 -220499858 + AluSx SINE Alu 1 301 -11 2196 107 0 7 chr3 7024731 7025020 -220499558 + AluSc SINE Alu 1 287 -22 281 241 143 53 chr3 7025029 7025162 -220499416 + L3 LINE CR1 1206 1350 -227 356 264 38 9 chr3 7025167 7025273 -220499305 + LTR16A1 LTR ERVL 11 119 -338 234 0 0 0 chr3 7025473 7025499 -220499079 + (CAGG)n Simple_repeat Simple_repeat 1 26 0 2116 127 23 10 chr3 7027430 7027738 -220496840 + AluSx SINE Alu 1 312 0 33 25 0 0 chr3 7027738 7027778 -220496800 + AT_rich Low_complexity Low_complexity 1 40 0 3793 55 13 0 chr3 7028697 7029173 -220495405 - L1PA6 LINE L1 -199 5955 5474 * 6587 54 22 2 chr3 7029172 7030041 -220494537 + L1P LINE L1 3694 4579 -1567 216 214 41 31 chr3 7030181 7030279 -220494299 + (CAAA)n Simple_repeat Simple_repeat 3 101 0 404 263 17 31 chr3 7030286 7030515 -220494063 + GA-rich Low_complexity Low_complexity 1 225 0 297 244 29 52 chr3 7030648 7030820 -220493758 + CT-rich Low_complexity Low_complexity 5 172 0 274 125 31 42 chr3 7030820 7030916 -220493662 + T-rich Low_complexity Low_complexity 2 96 0 532 215 15 8 chr3 7030993 7031123 -220493455 - AluSq/x SINE Alu -180 133 3 644 233 43 0 chr3 7031125 7031288 -220493290 - MIR SINE MIR -32 230 61 1913 162 0 9 chr3 7031293 7031608 -220492970 + AluSx SINE Alu 1 312 0 22 0 0 0 chr3 7031733 7031755 -220492823 + AT_rich Low_complexity Low_complexity 1 22 0 1552 199 28 0 chr3 7031786 7032068 -220492510 + MER63B DNA MER1_type 1 290 -146 902 81 16 0 chr3 7032079 7032202 -220492376 - FLAM_C SINE Alu -18 125 1 2313 116 0 0 chr3 7032205 7032533 -220492045 - AluSx SINE Alu 0 328 1 2074 147 0 3 chr3 7032535 7032847 -220491731 - AluSq SINE Alu -2 311 1 10220 39 27 94 chr3 7032887 7034370 -220490208 - SVA Other Other -3 1383 1 414 246 0 51 chr3 7034508 7034626 -220489952 + FLAM_A SINE Alu 27 138 -4 2274 109 0 0 chr3 7034629 7034922 -220489656 + AluSg SINE Alu 3 295 -15 1189 185 0 4 chr3 7034937 7035164 -220489414 + AluJo SINE Alu 87 312 0 1928 209 30 26 chr3 7035185 7035615 -220488963 - MLT1C LTR MaLR 0 467 36 585 144 40 0 chr3 7035619 7035744 -220488834 + CT-rich Low_complexity Low_complexity 1 130 0 2449 102 12 86 chr3 7035926 7036036 -220488542 - MER4A LTR ERV1 -172 492 375 2053 128 3 13 chr3 7036036 7036342 -220488236 - AluSx SINE Alu -9 303 1 2449 102 12 86 chr3 7036342 7036803 -220487775 - MER4A LTR ERV1 -289 375 1 2078 121 28 0 chr3 7037934 7038223 -220486355 - AluSx SINE Alu -13 299 3 271 268 97 48 chr3 7038351 7038620 -220485958 - L1ME4a LINE L1 -73 6048 5767 24 32 0 0 chr3 7038861 7038892 -220485686 + AT_rich Low_complexity Low_complexity 1 31 0 1135 138 29 0 chr3 7038892 7039066 -220485512 - AluJb SINE Alu -13 299 121 1492 181 42 21 chr3 7039156 7039443 -220485135 - AluJo SINE Alu -19 293 1 262 180 67 90 chr3 7041612 7041701 -220482877 - L1MC5 LINE L1 -44 7917 7831 1694 189 7 3 chr3 7041723 7042025 -220482553 - AluJb SINE Alu -9 303 1 21 57 0 0 chr3 7042220 7042255 -220482323 + AT_rich Low_complexity Low_complexity 1 35 0 23 0 0 0 chr3 7042331 7042354 -220482224 + AT_rich Low_complexity Low_complexity 1 23 0 1796 158 0 55 chr3 7042355 7042685 -220481893 - AluJb SINE Alu 0 312 1 225 296 25 12 chr3 7042707 7042788 -220481790 - L1ME4a LINE L1 -463 5658 5577 1647 214 81 29 chr3 7043392 7043924 -220480654 - MLT1F1 LTR MaLR 0 567 2 2366 97 0 0 chr3 7044200 7044499 -220480079 - AluSg SINE Alu -11 299 1 2128 123 0 3 chr3 7045492 7045801 -220478777 - AluSx SINE Alu -4 308 1 1650 235 92 74 chr3 7048297 7049090 -220475488 + L1MC4 LINE L1 7235 8041 -1 1218 162 43 43 chr3 7049287 7049522 -220475056 - MER8 DNA MER2_type -1 238 4 2242 98 0 7 chr3 7049624 7049919 -220474659 - AluSx SINE Alu -18 294 2 1283 182 42 42 chr3 7050158 7050220 -220474358 + L1PA16 LINE L1 5875 5936 -230 2180 124 3 0 chr3 7050220 7050519 -220474059 + AluSx SINE Alu 1 300 -12 1283 182 42 42 chr3 7050519 7050742 -220473836 + L1PA16 LINE L1 5935 6160 -6 196 282 0 0 chr3 7051785 7051824 -220472754 + MIR SINE MIR 37 75 -133 1200 186 53 56 chr3 7052306 7052591 -220471987 + AluJo SINE Alu 6 289 -23 2503 90 3 0 chr3 7053873 7054184 -220470394 - AluSp SINE Alu 0 313 2 1200 147 11 11 chr3 7054184 7054367 -220470211 - AluJb SINE Alu -5 307 122 293 128 0 21 chr3 7054368 7054415 -220470163 + AluSp SINE Alu 117 162 -141 817 96 0 0 chr3 7054419 7054523 -220470055 - AluJb SINE Alu -202 110 7 622 315 17 9 chr3 7054873 7055105 -220469473 + MIR SINE MIR 12 245 -17 278 363 18 33 chr3 7055163 7055223 -220469355 + L1MDa LINE L1 49 108 -6432 1970 132 3 32 chr3 7055223 7055533 -220469045 + AluSx SINE Alu 1 301 -11 278 363 18 33 chr3 7055533 7055745 -220468833 + L1MDa LINE L1 108 317 -6223 239 327 18 30 chr3 7056296 7056464 -220468114 + L1MDa LINE L1 854 1019 -5511 1072 113 0 92 chr3 7056600 7056785 -220467793 + AluSx SINE Alu 1 168 -144 2119 118 3 37 chr3 7056790 7057113 -220467465 + AluSx SINE Alu 1 312 0 4816 156 35 41 chr3 7057116 7057303 -220467275 + L1M4c LINE L1 721 908 -5476 1968 154 0 0 chr3 7057303 7057596 -220466982 + AluSx SINE Alu 1 293 -19 4816 156 35 41 chr3 7057596 7058471 -220466107 + L1M4c LINE L1 908 1776 -4608 1680 127 0 80 chr3 7058471 7058770 -220465808 + AluSx SINE Alu 1 275 -37 870 143 63 11 chr3 7058772 7058947 -220465631 + L1MB3 LINE L1 5949 6132 -51 1390 134 5 9 chr3 7058952 7059168 -220465410 + AluSg/x SINE Alu 82 296 -16 2091 203 95 97 chr3 7059197 7059929 -220464649 + L1MDa LINE L1 1469 2201 -4339 2099 146 25 22 chr3 7059929 7060291 -220464287 - THE1B LTR MaLR -1 363 1 2091 203 95 97 chr3 7060291 7060725 -220463853 + L1MDa LINE L1 2201 2634 -3906 1583 187 4 4 chr3 7060725 7060993 -220463585 + AluJo SINE Alu 6 273 -39 2091 203 95 97 chr3 7060993 7061498 -220463080 + L1MDa LINE L1 2634 3139 -3401 1170 206 65 43 chr3 7061498 7061775 -220462803 + AluJb SINE Alu 3 285 -17 2091 203 95 97 chr3 7061775 7062057 -220462521 + L1MDa LINE L1 3139 3420 -3120 1060 158 0 0 chr3 7062058 7062210 -220462368 - FRAM SINE Alu -25 151 1 1356 217 114 46 chr3 7062210 7062697 -220461881 + L1MDa LINE L1 3407 3859 -2681 2171 113 0 0 chr3 7062697 7063005 -220461573 - AluSx SINE Alu 0 308 1 2230 106 0 0 chr3 7063011 7063325 -220461253 - AluSx SINE Alu 0 314 1 1356 217 114 46 chr3 7063325 7063440 -220461138 + L1MDa LINE L1 3863 4060 -2480 564 311 11 11 chr3 7064693 7064876 -220459702 + HERVI LTR ERV1 788 970 -6815 2481 303 51 36 chr3 7065102 7066064 -220458514 + HERVI LTR ERV1 954 1900 -5885 3215 55 43 5 chr3 7066064 7066485 -220458093 + L1PA5 LINE L1 5717 6153 -1 2481 303 51 36 chr3 7066485 7068223 -220456355 + HERVI LTR ERV1 1900 4112 -3673 2729 325 35 31 chr3 7068305 7069931 -220454647 + HERVI LTR ERV1 4124 5756 -2029 2141 301 41 45 chr3 7070823 7072051 -220452527 + HERVI LTR ERV1 6425 7647 -138 2287 136 5 35 chr3 7072958 7073333 -220451245 - THE1B LTR MaLR 0 364 1 682 83 0 0 chr3 7073429 7073525 -220451053 + AluY SINE Alu 208 303 -8 26 0 0 0 chr3 7074414 7074440 -220450138 + AT_rich Low_complexity Low_complexity 1 26 0 251 202 160 75 chr3 7075008 7075102 -220449476 - MIR SINE MIR -62 146 45 792 160 23 0 chr3 7075621 7075752 -220448826 + AluJo SINE Alu 2 135 -177 2286 115 3 10 chr3 7075770 7076084 -220448494 + AluSx SINE Alu 1 312 0 249 321 274 0 chr3 7076263 7076453 -220448125 - MIR SINE MIR -20 242 1 570 144 11 0 chr3 7077298 7077388 -220447190 + AluSc SINE Alu 194 284 -25 210 37 0 0 chr3 7077393 7077420 -220447158 + (TAA)n Simple_repeat Simple_repeat 3 29 0 2089 112 0 3 chr3 7077420 7077751 -220446827 + AluSx SINE Alu 1 330 0 2279 101 0 0 chr3 7077751 7078038 -220446540 + AluSg SINE Alu 1 287 -23 812 170 69 6 chr3 7078063 7078222 -220446356 + AluSg/x SINE Alu 134 302 -7 2006 139 0 3 chr3 7078359 7078653 -220445925 + AluSx SINE Alu 1 293 -19 1422 164 21 52 chr3 7079573 7079860 -220444718 - AluJb SINE Alu -30 282 5 233 324 184 7 chr3 7080105 7080241 -220444337 + L2 LINE L2 2599 2758 -556 289 366 0 18 chr3 7080387 7080499 -220444079 + L2 LINE L2 3126 3235 -37 189 0 0 0 chr3 7080797 7080818 -220443760 + (TTCA)n Simple_repeat Simple_repeat 1 21 0 246 256 61 12 chr3 7080819 7080901 -220443677 - L2 LINE L2 -18 3295 3210 2035 83 65 7 chr3 7080969 7081246 -220443332 + AluSx SINE Alu 1 293 -19 1604 181 13 32 chr3 7081323 7081632 -220442946 + AluJo SINE Alu 6 308 -4 2467 81 0 0 chr3 7081817 7082113 -220442465 + AluSx SINE Alu 1 296 -16 1865 106 124 4 chr3 7082303 7082578 -220442000 + AluSg SINE Alu 1 308 -2 1712 135 67 28 chr3 7082691 7082973 -220441605 + AluSx SINE Alu 1 293 -19 765 154 0 8 chr3 7083183 7083313 -220441265 + AluJ SINE Alu 1 129 -173 2165 125 0 3 chr3 7083344 7083639 -220440939 + AluSx SINE Alu 1 294 -18 710 175 0 8 chr3 7083652 7083772 -220440806 - FLAM_C SINE Alu -23 120 2 926 184 0 36 chr3 7083790 7083958 -220440620 + AluJ SINE Alu 129 290 -22 1242 130 0 0 chr3 7084166 7084343 -220440235 + AluSq SINE Alu 133 309 -4 303 170 136 78 chr3 7084360 7084602 -220439976 + L1ME4a LINE L1 5538 5835 -286 272 293 113 7 chr3 7084684 7084834 -220439744 + L1ME4a LINE L1 5956 6121 0 24 0 0 0 chr3 7084840 7084864 -220439714 + AT_rich Low_complexity Low_complexity 1 24 0 2021 94 91 0 chr3 7085325 7085601 -220438977 - AluSg SINE Alu -9 301 1 2344 97 3 0 chr3 7085607 7085917 -220438661 - AluSx SINE Alu -1 311 1 21 0 0 0 chr3 7086176 7086197 -220438381 + AT_rich Low_complexity Low_complexity 1 21 0 1805 157 7 20 chr3 7087124 7087424 -220437154 + AluSx SINE Alu 1 296 -16 329 296 53 59 chr3 7088123 7088292 -220436286 + MER5A DNA MER1_type 22 189 0 1802 150 10 20 chr3 7088602 7088735 -220435843 + AluJo SINE Alu 1 134 -178 2209 94 0 70 chr3 7088735 7089066 -220435512 + AluSg SINE Alu 1 308 -2 1802 150 10 20 chr3 7089066 7089225 -220435353 + AluJo SINE Alu 134 290 -22 22 0 0 0 chr3 7090027 7090049 -220434529 + AT_rich Low_complexity Low_complexity 1 22 0 389 193 23 23 chr3 7090161 7090249 -220434329 + L2 LINE L2 3221 3308 -5 1869 137 53 0 chr3 7090328 7090612 -220433966 + AluJb SINE Alu 1 299 -13 1321 104 0 0 chr3 7090702 7090875 -220433703 + AluSp SINE Alu 132 304 -9 2055 121 0 7 chr3 7091829 7092110 -220432468 + AluSg SINE Alu 1 279 -31 1133 148 9 70 chr3 7092402 7092631 -220431947 + AluJo SINE Alu 1 215 -97 283 151 19 0 chr3 7092633 7092686 -220431892 + AluJo SINE Alu 83 136 -166 1615 111 4 25 chr3 7092708 7092952 -220431626 + AluSq SINE Alu 68 306 -7 203 303 121 0 chr3 7093681 7093780 -220430798 - L2 LINE L2 -1 3271 3161 1308 158 63 60 chr3 7094196 7094481 -220430097 + AluJo SINE Alu 23 308 -4 678 159 0 90 chr3 7094960 7094994 -220429584 - MER94 DNA DNA -1 133 98 2216 110 3 13 chr3 7094994 7095293 -220429285 - AluSx SINE Alu -16 296 1 678 159 0 90 chr3 7095293 7095403 -220429175 - MER94 DNA DNA -36 98 2 2196 157 60 35 chr3 7095442 7095894 -220428684 + MLT1C LTR MaLR 5 467 0 2341 107 22 19 chr3 7096017 7096383 -220428195 - L1PA16 LINE L1 0 6166 5800 2192 118 10 0 chr3 7096384 7096680 -220427898 - AluSq SINE Alu -14 299 1 2255 129 0 0 chr3 7097253 7097564 -220427014 + AluSx SINE Alu 1 311 -1 2108 135 0 3 chr3 7097753 7098057 -220426521 + AluSq SINE Alu 1 303 -10 2177 119 14 0 chr3 7098061 7098355 -220426223 + AluSx SINE Alu 1 298 -14 1910 127 3 67 chr3 7098940 7099255 -220425323 + AluSp SINE Alu 1 295 -18 2108 130 13 0 chr3 7099310 7099609 -220424969 + AluSg SINE Alu 1 303 -7 2513 135 46 14 chr3 7100102 7100502 -220424076 - MER65A LTR ERV1 0 445 29 2024 126 0 0 chr3 7100502 7100773 -220423805 - AluSx SINE Alu -41 271 1 2513 135 46 14 chr3 7100773 7100803 -220423775 - MER65A LTR ERV1 -416 29 1 766 170 7 22 chr3 7100838 7100973 -220423605 - FLAM_C SINE Alu 0 133 1 213 227 0 30 chr3 7101051 7101117 -220423461 + GA-rich Low_complexity Low_complexity 4 67 0 342 263 32 0 chr3 7101127 7101222 -220423356 + MER97c DNA MER1_type? 27 124 -966 222 118 0 0 chr3 7101249 7101283 -220423295 + (TTCTCC)n Simple_repeat Simple_repeat 4 37 0 222 279 9 63 chr3 7101492 7101603 -220422975 + GA-rich Low_complexity Low_complexity 4 108 0 433 69 0 0 chr3 7101735 7101793 -220422785 - L1P LINE L1 -2392 3754 3697 5738 41 0 3 chr3 7101795 7102477 -220422101 + L1PA5 LINE L1 5474 6153 -1 306 219 41 0 chr3 7102784 7102857 -220421721 + MER63 DNA MER1_type 7 708 -128 346 143 0 0 chr3 7102876 7102932 -220421646 + MER63 DNA MER1_type 970 1025 -36 299 258 31 69 chr3 7103016 7103175 -220421403 - MIR SINE MIR -1 261 109 4120 84 14 9 chr3 7103217 7103788 -220420790 - L1PA10 LINE L1 -3 6165 5592 1397 235 102 40 chr3 7104242 7104314 -220420264 - LTR16A1 LTR ERVL 0 457 391 1998 163 10 61 chr3 7104314 7104725 -220419853 - MLT1B LTR MaLR 0 390 1 1397 235 102 40 chr3 7104725 7105082 -220419496 - LTR16A1 LTR ERVL -66 391 1 338 289 44 0 chr3 7105321 7105411 -220419167 + L2 LINE L2 3162 3255 -17 511 272 0 0 chr3 7105444 7105558 -220419020 - MER81 DNA DNA 0 114 1 1882 172 0 10 chr3 7105660 7105974 -220418604 + AluSx SINE Alu 1 311 -1 250 293 211 48 chr3 7106500 7106647 -220417931 - MLT1K LTR MaLR -68 520 350 477 0 0 0 chr3 7106920 7106973 -220417605 + (TG)n Simple_repeat Simple_repeat 2 54 0 271 211 67 96 chr3 7107218 7107405 -220417173 + LOR1a LTR ERV1 310 603 0 1281 264 124 30 chr3 7108196 7108722 -220415856 - MLT1L LTR MaLR 0 615 41 1203 206 258 76 chr3 7108922 7109423 -220415155 + MLT1G1 LTR MaLR 3 594 -1 412 291 15 65 chr3 7109732 7109931 -220414647 + MLT1I LTR MaLR 80 268 -141 678 167 25 0 chr3 7109973 7110093 -220414485 - FAM SINE Alu -9 40 1 1226 213 30 4 chr3 7110097 7110459 -220414119 + MER74A LTR ERVL 14 468 -90 381 298 35 0 chr3 7110547 7110661 -220413917 + MLT1I LTR MaLR 288 405 -4 295 345 67 8 chr3 7110693 7110812 -220413766 + MLT1K LTR MaLR 62 187 -401 1297 258 73 35 chr3 7110815 7111164 -220413414 + L2 LINE L2 2526 2860 -453 1558 188 27 48 chr3 7111164 7111537 -220413041 - MLT1A1 LTR MaLR 0 365 1 1297 258 73 35 chr3 7111537 7111936 -220412642 + L2 LINE L2 2860 3311 -2 245 323 0 0 chr3 7111952 7112014 -220412564 + MLT1K LTR MaLR 180 241 -347 257 265 47 82 chr3 7112307 7112477 -220412101 + MLT1J2 LTR MaLR 287 450 0 626 246 82 75 chr3 7112481 7112762 -220411816 + MLT1K LTR MaLR 304 586 -2 270 279 130 0 chr3 7113308 7113469 -220411109 + MIR SINE MIR 81 262 0 255 310 58 35 chr3 7113575 7113662 -220410916 - L2 LINE L2 -43 3270 3182 233 357 9 0 chr3 7114960 7115072 -220409506 + MIR SINE MIR 140 252 -10 624 266 89 10 chr3 7115087 7115290 -220409288 - MIR SINE MIR -5 257 39 842 318 130 16 chr3 7115588 7116079 -220408499 + L3 LINE CR1 843 1389 -188 188 354 36 16 chr3 7116157 7116349 -220408229 + L2 LINE L2 2779 2974 -340 2355 93 3 0 chr3 7116415 7116706 -220407872 + AluSx SINE Alu 1 292 -20 180 125 0 0 chr3 7116835 7116867 -220407711 + (CA)n Simple_repeat Simple_repeat 2 33 0 295 233 155 19 chr3 7116867 7116970 -220407608 + L2 LINE L2 3196 3312 -1 861 256 106 57 chr3 7118031 7118420 -220406158 + LTR33A LTR ERVL 2 421 -102 1954 146 3 0 chr3 7118420 7118714 -220405864 - AluSx SINE Alu -17 295 1 861 256 106 57 chr3 7118714 7118816 -220405762 + LTR33A LTR ERVL 421 517 -6 678 264 73 67 chr3 7119095 7119191 -220405387 + L2 LINE L2 2621 2715 -599 1496 190 48 7 chr3 7119191 7119481 -220405097 + AluJo SINE Alu 1 302 -10 678 264 73 67 chr3 7119481 7119728 -220404850 + L2 LINE L2 2715 2966 -348 239 197 211 14 chr3 7119926 7119997 -220404581 + L2 LINE L2 3227 3311 -2 210 313 0 0 chr3 7120001 7120068 -220404510 - MIR SINE MIR -115 147 81 2108 115 7 23 chr3 7121127 7121432 -220403146 + AluSx SINE Alu 3 302 -10 467 273 60 105 chr3 7121560 7121912 -220402666 - MLT1I LTR MaLR 0 409 74 773 292 33 17 chr3 7122000 7122240 -220402338 + MIR SINE MIR 18 261 -1 201 304 14 87 chr3 7122330 7122399 -220402179 + L2 LINE L2 3200 3263 -9 1606 190 16 29 chr3 7122523 7122839 -220401739 - AluJb SINE Alu 0 312 1 288 263 79 94 chr3 7123086 7123136 -220401442 - MIR SINE MIR 0 262 213 953 92 0 241 chr3 7123136 7123201 -220401377 - MER5A DNA MER1_type 0 189 110 2171 120 0 3 chr3 7123201 7123500 -220401078 + AluSx SINE Alu 1 298 -14 348 24 0 0 chr3 7123505 7123546 -220401032 + (CA)n Simple_repeat Simple_repeat 2 42 0 953 92 0 241 chr3 7123546 7123723 -220400855 - MER5A DNA MER1_type -83 106 1 288 263 79 94 chr3 7123723 7123938 -220400640 - MIR SINE MIR -49 213 1 309 289 86 16 chr3 7124735 7124863 -220399715 + L3 LINE CR1 1134 1270 -307 389 313 0 0 chr3 7125366 7125465 -220399113 - MIR SINE MIR -76 132 34 289 0 148 0 chr3 7125474 7125535 -220399043 + T-rich Low_complexity Low_complexity 6 75 0 419 257 13 72 chr3 7125631 7125783 -220398795 - MIR SINE MIR -43 219 77 2092 158 29 8 chr3 7126560 7126940 -220397638 - MLT1B LTR MaLR 0 390 3 377 245 133 10 chr3 7126948 7127046 -220397532 - L2 LINE L2 -16 3297 3188 393 308 60 8 chr3 7127436 7127569 -220397009 + MIR3 SINE MIR 21 160 -48 234 261 45 81 chr3 7128400 7128511 -220396067 - L2 LINE L2 -8 3305 3199 2093 141 3 0 chr3 7128522 7128819 -220395759 + AluJb SINE Alu 1 298 -14 3127 186 25 21 chr3 7129183 7129743 -220394835 + MER68 LTR ERV1 1 562 0 840 133 7 53 chr3 7129922 7130073 -220394505 - MLT1B LTR MaLR -8 382 239 1984 154 52 12 chr3 7130120 7130450 -220394128 + MER61A LTR ERV1 1 343 0 281 80 0 60 chr3 7132477 7132527 -220392051 + Alu SINE Alu 1 47 -255 973 141 19 0 chr3 7132527 7132683 -220391895 + AluSg/x SINE Alu 141 299 -11 361 298 92 26 chr3 7132718 7132946 -220391632 + MIR SINE MIR 14 256 -6 458 273 0 0 chr3 7133079 7133189 -220391389 - MER94 DNA DNA 0 134 25 266 321 171 0 chr3 7133574 7133714 -220390864 - MER117 DNA MER1_type -15 182 19 1046 251 58 69 chr3 7134013 7134589 -220389989 + L2 LINE L2 2760 3306 -7 21 36 0 0 chr3 7135817 7135845 -220388733 + AT_rich Low_complexity Low_complexity 1 28 0 1794 101 8 0 chr3 7135860 7136108 -220388470 - AluSq SINE Alu -63 250 1 191 362 133 0 chr3 7136233 7136338 -220388240 - L2 LINE L2 -1 3312 3194 282 315 11 0 chr3 7136696 7136788 -220387790 - MIR3 SINE MIR -25 183 91 1579 189 28 18 chr3 7137751 7138037 -220386541 - AluJo SINE Alu -23 289 1 692 279 47 63 chr3 7138133 7138434 -220386144 - L2 LINE L2 -13 3300 3005 510 298 12 6 chr3 7138614 7138782 -220385796 - MIR SINE MIR -22 240 72 187 284 74 53 chr3 7138887 7138982 -220385596 + MIR SINE MIR 70 144 -64 402 336 17 0 chr3 7139655 7139834 -220384744 - MIR SINE MIR -44 218 36 332 180 0 0 chr3 7140699 7140760 -220383818 - MLT2B1 LTR ERVL -4 516 456 * 1570 206 81 22 chr3 7140759 7141131 -220383447 - MLT2D LTR ERVL -20 534 1 5495 167 23 13 chr3 7141582 7143045 -220381533 + L1P5 LINE L1 4129 5608 -543 2430 77 0 3 chr3 7143045 7143344 -220381234 + AluY SINE Alu 1 298 -13 5495 167 23 13 chr3 7143344 7143508 -220381070 + L1P5 LINE L1 5608 5769 -382 991 337 33 19 chr3 7143916 7143969 -220380609 + L1M3c LINE L1 959 1010 -6088 198 0 0 0 chr3 7143969 7143991 -220380587 + (CA)n Simple_repeat Simple_repeat 1 22 0 991 337 33 19 chr3 7143991 7144364 -220380214 + L1M3c LINE L1 1010 1391 -5707 225 283 92 33 chr3 7144524 7144644 -220379934 + L1M3c LINE L1 1681 1807 -5361 3270 247 110 22 chr3 7145173 7145629 -220378949 + L1M3c LINE L1 1902 2316 -4851 7800 51 6 10 chr3 7145629 7147170 -220377408 + SVA Other Other 7 1385 -1 3270 247 110 22 chr3 7147170 7148975 -220375603 + L1M3c LINE L1 2316 3990 -3177 1809 162 3 17 chr3 7148975 7149265 -220375313 + AluJb SINE Alu 5 290 -22 3270 247 110 22 chr3 7149265 7149425 -220375153 + L1M3c LINE L1 3990 4134 -3033 1164 197 92 4 chr3 7149425 7149664 -220374914 + AluJo SINE Alu 1 260 -52 449 117 57 0 chr3 7149720 7149803 -220374775 - L1M2 LINE L1 -4352 1683 1346 6194 177 29 7 chr3 7149841 7151065 -220373513 + L1M3c LINE L1 4125 5375 -1792 1793 285 18 7 chr3 7151097 7151616 -220372962 - L1M2 LINE L1 -5251 704 1 227 317 45 22 chr3 7151718 7151942 -220372636 - L1M4 LINE L1 -3065 3081 2853 371 262 0 48 chr3 7152306 7152409 -220372169 + MIR SINE MIR 44 141 -67 282 253 121 96 chr3 7152647 7152845 -220371733 + MIR SINE MIR 19 221 -41 1137 130 6 0 chr3 7153576 7153745 -220370833 + AluSg/x SINE Alu 131 300 -10 1083 256 108 42 chr3 7154261 7154694 -220369884 + MLT1C LTR MaLR 5 466 -1 384 132 40 53 chr3 7154763 7154839 -220369739 - LTR65 LTR ERV1 -256 413 339 381 312 85 0 chr3 7155564 7155705 -220368873 + Charlie8 DNA MER1_type 113 265 -2152 2188 186 9 30 chr3 7155841 7156270 -220368308 - MLT1E2 LTR MaLR 0 626 207 3497 98 11 7 chr3 7156339 7156789 -220367789 - MLT2A2 LTR ERVL 0 453 2 1251 238 19 7 chr3 7156796 7157103 -220367475 + L1ME2 LINE L1 5840 6150 -14 195 42 0 0 chr3 7157130 7157154 -220367424 + (TTTA)n Simple_repeat Simple_repeat 2 25 0 1607 192 6 41 chr3 7157207 7157524 -220367054 + AluJo SINE Alu 1 306 -6 22 0 0 0 chr3 7158153 7158175 -220366403 + AT_rich Low_complexity Low_complexity 1 22 0 293 324 22 7 chr3 7158238 7158374 -220366204 + MIR3 SINE MIR 57 194 -14 1292 212 33 29 chr3 7158459 7158765 -220365813 - MER58B DNA MER1_type 0 341 35 340 290 145 32 chr3 7159011 7159259 -220365319 + MLT1J LTR MaLR 1 276 -273 1533 286 82 8 chr3 7159372 7159848 -220364730 + MLT1E LTR MaLR 3 513 -80 470 216 22 65 chr3 7159896 7160035 -220364543 + MLT1J LTR MaLR 379 511 0 1797 147 3 20 chr3 7160390 7160683 -220363895 + AluSx SINE Alu 13 300 -12 281 275 57 9 chr3 7162018 7162132 -220362446 + MIR SINE MIR 36 154 -59 721 205 98 48 chr3 7162133 7162453 -220362125 - LTR37B LTR ERV1 0 468 125 796 220 43 0 chr3 7162543 7162757 -220361821 + MER58C DNA MER1_type 12 215 0 321 284 22 37 chr3 7163768 7163902 -220360676 + Charlie8 DNA MER1_type 61 192 -2225 291 215 11 108 chr3 7163918 7163984 -220360594 + MER5A DNA MER1_type 9 65 -124 2132 124 3 10 chr3 7163984 7164290 -220360288 + AluSx SINE Alu 1 304 -8 291 215 11 108 chr3 7164290 7164316 -220360262 + MER5A DNA MER1_type 65 92 -97 185 302 0 0 chr3 7164694 7164737 -220359841 + L2 LINE L2 3218 3260 -12 266 234 13 78 chr3 7164810 7164887 -220359691 + L2 LINE L2 3175 3246 -26 181 325 149 9 chr3 7164970 7165084 -220359494 - L2 LINE L2 -14 3299 3170 261 161 77 51 chr3 7165155 7165247 -220359331 - MLT1H LTR MaLR -18 572 281 346 192 51 0 chr3 7165311 7165389 -220359189 - MLT1H LTR MaLR -229 320 239 2239 111 16 3 chr3 7165422 7165729 -220358849 + AluSx SINE Alu 1 311 -1 531 288 18 12 chr3 7166066 7166229 -220358349 - MLT1H LTR MaLR -374 175 12 491 274 39 17 chr3 7166401 7166580 -220357998 - MIR SINE MIR -3 259 77 246 250 0 0 chr3 7167479 7167539 -220357039 + A-rich Low_complexity Low_complexity 1 60 0 448 290 33 49 chr3 7167560 7167743 -220356835 + MER117 DNA MER1_type 2 181 -16 1564 164 53 37 chr3 7167884 7168183 -220356395 + AluJo SINE Alu 1 304 -8 1554 196 39 0 chr3 7168204 7168490 -220356088 + AluJo SINE Alu 11 307 -5 233 169 0 84 chr3 7169121 7169192 -220355386 + T-rich Low_complexity Low_complexity 3 67 0 267 114 0 0 chr3 7169194 7169238 -220355340 + (TTCC)n Simple_repeat Simple_repeat 4 47 0 1737 153 33 0 chr3 7169238 7169559 -220355019 - AluJb SINE Alu 0 331 1 884 208 133 123 chr3 7169916 7170487 -220354091 - LTR8A LTR ERV1 -150 577 1 1926 115 11 0 chr3 7170603 7170962 -220353616 + AluSg SINE Alu 1 362 0 2118 121 3 0 chr3 7171026 7171324 -220353254 + AluSx SINE Alu 1 299 -13 1589 159 41 14 chr3 7172011 7172301 -220352277 + AluJo SINE Alu 1 298 -14 2260 64 0 3 chr3 7172404 7172713 -220351865 + AluY SINE Alu 1 308 0 1692 174 0 17 chr3 7172717 7173015 -220351563 + AluJb SINE Alu 1 293 -19 1019 114 27 0 chr3 7173230 7173379 -220351199 - AluSg/x SINE Alu -16 294 142 1107 263 58 0 chr3 7173379 7173687 -220350891 - MLT1B LTR MaLR -63 327 2 1014 275 136 21 chr3 7174153 7174528 -220350050 - L2 LINE L2 0 3313 2896 511 267 0 8 chr3 7174543 7174674 -220349904 - AluJb SINE Alu -1 311 182 230 229 0 0 chr3 7174674 7174722 -220349856 + MLT1E1 LTR MaLR 4 51 -603 * 2127 226 66 57 chr3 7174689 7175299 -220349279 + MLT1E2 LTR MaLR 10 624 -2 536 273 50 0 chr3 7175331 7175492 -220349086 - L2 LINE L2 -420 2894 2726 290 318 95 0 chr3 7176830 7176956 -220347622 + MIR SINE MIR 117 254 -8 1832 168 10 0 chr3 7177167 7177477 -220347101 + 7SLRNA srpRNA srpRNA 1 313 -7 418 240 275 43 chr3 7177601 7177859 -220346719 - L2 LINE L2 -4 3309 2992 371 321 37 0 chr3 7178214 7178348 -220346230 - MIR SINE MIR 0 262 124 368 267 91 82 chr3 7178428 7178519 -220346059 + L3 LINE CR1 1115 1204 -373 1964 134 0 0 chr3 7178519 7178809 -220345769 + AluSx SINE Alu 1 290 -22 368 267 91 82 chr3 7178809 7178949 -220345629 + L3 LINE CR1 1204 1348 -229 366 274 35 9 chr3 7178949 7179062 -220345516 + LTR16A1 LTR ERVL 4 119 -338 234 0 0 0 chr3 7179262 7179288 -220345290 + (CAGG)n Simple_repeat Simple_repeat 1 26 0 2408 43 7 0 chr3 7180380 7180685 -220343893 - AluY SINE Alu -4 307 1 269 157 0 0 chr3 7180754 7180805 -220343773 - L1MB8 LINE L1 -4 6174 6124 1344 171 144 4 chr3 7180819 7181082 -220343496 - AluSg SINE Alu 0 300 1 22 0 0 0 chr3 7181082 7181104 -220343474 + AT_rich Low_complexity Low_complexity 1 22 0 2252 147 34 0 chr3 7181104 7181457 -220343121 - L1PA16 LINE L1 -9 6157 5793 315 132 38 0 chr3 7181457 7181510 -220343068 - L1MB8 LINE L1 -41 6137 6083 213 39 0 0 chr3 7182034 7182060 -220342518 + (CA)n Simple_repeat Simple_repeat 2 27 0 304 216 88 49 chr3 7182177 7182279 -220342299 + MER5A DNA MER1_type 81 186 -3 238 115 39 0 chr3 7182669 7182721 -220341857 + (CA)n Simple_repeat Simple_repeat 1 54 0 285 191 44 3 chr3 7182812 7182954 -220341624 + MER53 DNA DNA 3 186 -3 1696 128 139 0 chr3 7183162 7183436 -220341142 - AluSx SINE Alu 0 312 1 24 0 0 0 chr3 7183442 7183466 -220341112 + AT_rich Low_complexity Low_complexity 1 24 0 200 267 0 0 chr3 7183708 7183753 -220340825 + MER91 DNA MER1_type 1 45 -151 1513 243 132 50 chr3 7184069 7184608 -220339970 + MLT1G LTR MaLR 8 590 0 7209 58 3 3 chr3 7185095 7186583 -220337995 - L1PA7 LINE L1 0 6154 4668 4597 79 10 22 chr3 7186848 7188016 -220336562 + SVA Other Other 1 1386 0 22 70 0 0 chr3 7188403 7188446 -220336132 + AT_rich Low_complexity Low_complexity 1 43 0 657 219 8 0 chr3 7188515 7188634 -220335944 + FLAM_A SINE Alu 1 120 -13 297 282 39 19 chr3 7189173 7189276 -220335302 + MIR3 SINE MIR 54 158 -50 595 247 14 0 chr3 7189380 7189526 -220335052 - MER103 DNA DNA 0 166 19 2231 107 0 0 chr3 7189862 7190161 -220334417 + AluSx SINE Alu 1 299 -13 355 222 25 0 chr3 7190464 7190545 -220334033 + MER117 DNA MER1_type 75 157 -40 992 60 26 27 chr3 7190694 7191207 -220333371 + (TG)n Simple_repeat Simple_repeat 1 512 0 661 228 39 22 chr3 7191835 7192015 -220332563 + MER3 DNA MER1_type 1 183 -26 283 301 67 46 chr3 7192226 7192465 -220332113 + L2 LINE L2 2734 2977 -337 2401 59 0 3 chr3 7192534 7192838 -220331740 + AluY SINE Alu 1 303 -8 2083 100 4 0 chr3 7192847 7193127 -220331451 + AluSx SINE Alu 2 282 -30 459 0 0 0 chr3 7193130 7193181 -220331397 + (CATA)n Simple_repeat Simple_repeat 2 52 0 948 236 75 77 chr3 7193299 7193752 -220330826 - MER110A LTR ERV1 -14 454 3 278 301 68 62 chr3 7193781 7193809 -220330769 + L2 LINE L2 3166 3192 -121 354 23 0 0 chr3 7193809 7193852 -220330726 + (TC)n Simple_repeat Simple_repeat 2 44 0 278 301 68 62 chr3 7193852 7193969 -220330609 + L2 LINE L2 3192 3312 -1 333 295 19 9 chr3 7194740 7194845 -220329733 - MLT1K LTR MaLR -6 582 477 794 254 11 0 chr3 7195218 7195395 -220329183 + MER5A DNA MER1_type 3 181 -8 1960 154 0 0 chr3 7195655 7195954 -220328624 - AluSx SINE Alu -13 299 1 1172 98 0 0 chr3 7195980 7196143 -220328435 - AluYa5 SINE Alu -16 295 133 2563 40 0 0 chr3 7196143 7196445 -220328133 - AluYb8 SINE Alu -16 302 1 299 269 172 27 chr3 7196453 7196639 -220327939 + L1ME4a LINE L1 5682 5894 -227 1011 243 109 76 chr3 7196672 7196839 -220327739 - MLT1F1 LTR MaLR -1 566 406 1506 136 81 0 chr3 7196839 7197075 -220327503 + AluSx SINE Alu 44 298 -14 1011 243 109 76 chr3 7197075 7197352 -220327226 - MLT1F1 LTR MaLR -161 406 104 266 333 11 0 chr3 7197473 7197563 -220327015 - MLT1F1 LTR MaLR -498 95 5 669 227 0 0 chr3 7198133 7198252 -220326326 + FLAM_A SINE Alu 5 123 -10 798 267 89 71 chr3 7199394 7199459 -220325119 - MLT1K LTR MaLR -63 525 463 3531 126 4 28 chr3 7199459 7199999 -220324579 - MER1A DNA MER1_type 0 527 1 798 267 89 71 chr3 7199999 7200326 -220324252 - MLT1K LTR MaLR -125 463 126 287 204 21 0 chr3 7200545 7200638 -220323940 + (TTCA)n Simple_repeat Simple_repeat 3 97 0 292 225 113 0 chr3 7200670 7200741 -220323837 + L2 LINE L2 3194 3272 0 2670 120 31 2 chr3 7200758 7201174 -220323404 - MSTA LTR MaLR 0 428 1 520 171 202 0 chr3 7201414 7201543 -220323035 - MER5A DNA MER1_type -29 160 6 479 233 133 13 chr3 7202063 7202213 -220322365 - MIR SINE MIR -74 188 21 880 175 23 0 chr3 7202667 7202838 -220321740 - FRAM SINE Alu -1 175 1 2009 123 0 3 chr3 7203832 7204141 -220320437 - AluSx SINE Alu -4 308 1 213 189 0 0 chr3 7205068 7205105 -220319473 + (TG)n Simple_repeat Simple_repeat 2 38 0 446 271 7 52 chr3 7205407 7205562 -220319016 + MER103 DNA DNA 19 166 0 292 219 110 24 chr3 7205621 7205703 -220318875 - L2 LINE L2 0 3272 3184 201 171 0 0 chr3 7205725 7205760 -220318818 + A-rich Low_complexity Low_complexity 1 35 0 787 110 17 0 chr3 7205761 7205879 -220318699 + AluSc SINE Alu 164 283 -26 228 222 79 32 chr3 7206217 7206280 -220318298 + MIR3 SINE MIR 129 194 -14 207 0 0 0 chr3 7206339 7206362 -220318216 + (TG)n Simple_repeat Simple_repeat 2 24 0 1931 121 0 0 chr3 7206368 7206649 -220317929 - AluSx SINE Alu -31 281 1 2339 84 0 0 chr3 7208926 7209223 -220315355 + AluSq SINE Alu 1 297 -16 21 0 0 0 chr3 7209885 7209906 -220314672 + AT_rich Low_complexity Low_complexity 1 21 0 1808 147 0 34 chr3 7211291 7211611 -220312967 + AluJo SINE Alu 1 309 -3 1669 86 9 0 chr3 7211700 7211933 -220312645 + L1MA2 LINE L1 6070 6304 0 31 0 0 0 chr3 7211933 7211964 -220312614 + AT_rich Low_complexity Low_complexity 1 31 0 2237 67 3 0 chr3 7212922 7213219 -220311359 + AluY SINE Alu 1 298 -13 27 0 0 0 chr3 7214472 7214499 -220310079 + GC_rich Low_complexity Low_complexity 1 27 0 23 0 0 0 chr3 7214681 7214704 -220309874 + GC_rich Low_complexity Low_complexity 1 23 0 22 56 0 0 chr3 7215221 7215257 -220309321 + GC_rich Low_complexity Low_complexity 1 36 0 504 220 197 34 chr3 7217499 7217702 -220306876 + MIR SINE MIR 17 237 -25 1839 134 10 3 chr3 7217747 7218039 -220306539 + AluSx SINE Alu 1 294 -18 231 254 34 0 chr3 7218097 7218156 -220306422 + L1MC/D LINE L1 5443 5503 -2305 387 263 59 0 chr3 7218164 7218282 -220306296 + FAM SINE Alu 35 159 -16 818 188 211 32 chr3 7218363 7218761 -220305817 - LTR54B LTR ERV1 0 510 2 1931 124 14 0 chr3 7218774 7219065 -220305513 + AluSx SINE Alu 2 296 -16 2141 86 41 3 chr3 7219622 7219912 -220304666 + AluY SINE Alu 1 301 -10 371 266 107 35 chr3 7220308 7220477 -220304101 - MIR3 SINE MIR -6 202 22 22 35 0 0 chr3 7223092 7223121 -220301457 + AT_rich Low_complexity Low_complexity 1 29 0 189 0 0 0 chr3 7224449 7224470 -220300108 + (A)n Simple_repeat Simple_repeat 1 21 0 2344 70 13 0 chr3 7225067 7225365 -220299213 + AluSq SINE Alu 1 302 -11 1152 149 123 0 chr3 7225803 7225998 -220298580 - MER20 DNA MER1_type 0 219 1 2156 125 0 3 chr3 7226289 7226593 -220297985 + AluSx SINE Alu 1 303 -9 1818 192 68 21 chr3 7226822 7227250 -220297328 + MLT1C LTR MaLR 18 465 -2 874 153 127 0 chr3 7227533 7227683 -220296895 - MER6B DNA MER2_type -5 205 37 1920 122 15 0 chr3 7227733 7228004 -220296574 + AluSx SINE Alu 14 288 -24 539 74 98 0 chr3 7228008 7228171 -220296407 + (TA)n Simple_repeat Simple_repeat 2 180 0 238 274 0 0 chr3 7228191 7228242 -220296336 - MER6B DNA MER2_type -224 52 2 1941 58 81 0 chr3 7229075 7229365 -220295213 - AluY SINE Alu 0 312 2 690 120 88 16 chr3 7229386 7229511 -220295067 - MER46A DNA MER2_type 0 236 103 492 307 81 45 chr3 7229562 7229894 -220294684 + L2 LINE L2 2952 3295 -18 2140 95 18 7 chr3 7231179 7231482 -220293096 + AluSq SINE Alu 1 306 0 2009 138 6 6 chr3 7231795 7232107 -220292471 + AluSx SINE Alu 1 312 0 1605 184 41 17 chr3 7233115 7233475 -220291103 + L1MB3 LINE L1 5350 5914 -257 393 39 0 0 chr3 7233475 7233526 -220291052 + (CA)n Simple_repeat Simple_repeat 1 51 0 1605 184 41 17 chr3 7233526 7233581 -220290997 + L1MB3 LINE L1 5914 5966 -205 827 176 42 18 chr3 7233587 7233752 -220290826 + L1MB3 LINE L1 6014 6182 -1 21 71 0 0 chr3 7233837 7233879 -220290699 + AT_rich Low_complexity Low_complexity 1 42 0 191 303 61 15 chr3 7234103 7234169 -220290409 + MIR3 SINE MIR 111 179 -29 1461 186 13 68 chr3 7234453 7234760 -220289818 + AluJb SINE Alu 1 290 -22 516 264 21 7 chr3 7235093 7235233 -220289345 - MIR SINE MIR -48 214 73 1092 101 0 0 chr3 7235291 7235439 -220289139 - Tigger7 DNA MER2_type -1 2486 2339 346 171 100 0 chr3 7235458 7235528 -220289050 - Tigger7 DNA MER2_type -473 77 1 417 264 162 0 chr3 7235720 7235868 -220288710 + MIR3 SINE MIR 33 204 -4 1983 104 45 3 chr3 7236186 7236475 -220288103 + AluSx SINE Alu 1 301 -11 2279 105 0 0 chr3 7236486 7236781 -220287797 + AluSc SINE Alu 1 295 -14 1697 235 92 74 chr3 7237614 7238407 -220286171 + L1MC4 LINE L1 7235 8041 -1 1306 162 43 43 chr3 7238604 7238839 -220285739 - MER8 DNA MER2_type -1 238 4 2216 98 0 7 chr3 7238941 7239236 -220285342 - AluSx SINE Alu -18 294 2 1234 175 45 65 chr3 7239475 7239543 -220285035 + L1PA16 LINE L1 5875 5943 -223 2141 119 3 0 chr3 7239543 7239836 -220284742 + AluSx SINE Alu 7 300 -12 1234 175 45 65 chr3 7239836 7240059 -220284519 + L1PA16 LINE L1 5943 6160 -6 185 306 69 14 chr3 7240949 7241021 -220283557 - L2 LINE L2 -219 3094 3019 210 282 0 0 chr3 7241100 7241139 -220283439 + MIR SINE MIR 37 75 -133 1184 186 53 56 chr3 7241622 7241907 -220282671 + AluJo SINE Alu 6 289 -23 2489 90 3 0 chr3 7243189 7243500 -220281078 - AluSp SINE Alu 0 313 2 1174 152 11 11 chr3 7243500 7243683 -220280895 - AluJb SINE Alu -5 307 122 291 128 0 21 chr3 7243684 7243731 -220280847 + AluSp SINE Alu 117 162 -141 805 96 0 0 chr3 7243735 7243839 -220280739 - AluJb SINE Alu -202 110 7 690 315 17 9 chr3 7244189 7244421 -220280157 + MIR SINE MIR 12 245 -17 284 363 18 33 chr3 7244479 7244539 -220280039 + L1MDa LINE L1 49 108 -6432 1954 132 3 32 chr3 7244539 7244849 -220279729 + AluSx SINE Alu 1 301 -11 284 363 18 33 chr3 7244849 7245061 -220279517 + L1MDa LINE L1 108 317 -6223 244 327 18 30 chr3 7245612 7245780 -220278798 + L1MDa LINE L1 854 1019 -5511 1059 119 0 92 chr3 7245916 7246101 -220278477 + AluSx SINE Alu 1 168 -144 2104 118 3 37 chr3 7246106 7246429 -220278149 + AluSx SINE Alu 1 312 0 4866 156 35 41 chr3 7246432 7246619 -220277959 + L1M4c LINE L1 721 908 -5476 1949 154 0 0 chr3 7246619 7246912 -220277666 + AluSx SINE Alu 1 293 -19 4866 156 35 41 chr3 7246912 7247787 -220276791 + L1M4c LINE L1 908 1776 -4608 1658 127 0 80 chr3 7247787 7248086 -220276492 + AluSx SINE Alu 1 275 -37 859 149 63 11 chr3 7248088 7248263 -220276315 + L1MB3 LINE L1 5949 6132 -51 1384 134 5 9 chr3 7248268 7248484 -220276094 + AluSg/x SINE Alu 82 296 -16 2131 203 95 98 chr3 7248513 7249249 -220275329 + L1MDa LINE L1 1469 2206 -4334 2183 147 28 22 chr3 7249249 7249610 -220274968 - THE1B LTR MaLR -1 363 1 2131 203 95 98 chr3 7249610 7250044 -220274534 + L1MDa LINE L1 2206 2640 -3900 1569 187 4 4 chr3 7250044 7250312 -220274266 + AluJo SINE Alu 6 273 -39 2131 203 95 98 chr3 7250312 7250817 -220273761 + L1MDa LINE L1 2640 3138 -3402 1296 199 65 43 chr3 7250817 7251094 -220273484 + AluJb SINE Alu 3 285 -17 2131 203 95 98 chr3 7251094 7251376 -220273202 + L1MDa LINE L1 3138 3420 -3120 1049 158 0 0 chr3 7251377 7251529 -220273049 - FRAM SINE Alu -25 151 1 1402 222 113 44 chr3 7251529 7252016 -220272562 + L1MDa LINE L1 3407 3859 -2681 2152 113 0 0 chr3 7252016 7252324 -220272254 - AluSx SINE Alu 0 308 1 2208 106 0 0 chr3 7252330 7252644 -220271934 - AluSx SINE Alu 0 314 1 1402 222 113 44 chr3 7252644 7252759 -220271819 + L1MDa LINE L1 3863 4060 -2480 576 340 20 8 chr3 7253944 7254194 -220270384 + HERVI LTR ERV1 718 970 -6815 5324 309 44 45 chr3 7254420 7255381 -220269197 + HERVI LTR ERV1 954 1914 -5871 3370 55 43 5 chr3 7255381 7255802 -220268776 + L1PA5 LINE L1 5717 6153 -1 5324 309 44 45 chr3 7255802 7259248 -220265330 + HERVI LTR ERV1 1914 5756 -2029 2147 300 41 45 chr3 7260140 7261368 -220263210 + HERVI LTR ERV1 6425 7647 -138 2417 136 5 35 chr3 7262276 7262651 -220261927 - THE1B LTR MaLR 0 364 1 720 83 0 0 chr3 7262747 7262843 -220261735 + AluY SINE Alu 208 303 -8 26 0 0 0 chr3 7263732 7263758 -220260820 + AT_rich Low_complexity Low_complexity 1 26 0 284 202 160 75 chr3 7264326 7264420 -220260158 - MIR SINE MIR -62 146 45 838 160 23 0 chr3 7264942 7265073 -220259505 + AluJo SINE Alu 2 135 -177 2276 115 3 10 chr3 7265091 7265405 -220259173 + AluSx SINE Alu 1 312 0 304 321 274 0 chr3 7265584 7265774 -220258804 - MIR SINE MIR -20 242 1 377 146 0 0 chr3 7266619 7266674 -220257904 + AluSg/x SINE Alu 196 250 -52 887 162 61 92 chr3 7266674 7266714 -220257864 + AluSg/x SINE Alu 83 123 -187 210 37 0 0 chr3 7266714 7266741 -220257837 + (TAA)n Simple_repeat Simple_repeat 3 29 0 2038 109 3 3 chr3 7266741 7267072 -220257506 + AluSx SINE Alu 1 331 0 2258 101 0 0 chr3 7267072 7267359 -220257219 + AluSg SINE Alu 1 287 -23 887 162 61 92 chr3 7267359 7267543 -220257035 + AluSg/x SINE Alu 120 303 -7 1980 139 0 3 chr3 7267680 7267974 -220256604 + AluSx SINE Alu 1 293 -19 1401 164 21 52 chr3 7268894 7269181 -220255397 - AluJb SINE Alu -30 282 5 224 333 216 6 chr3 7269391 7269562 -220255016 + L2 LINE L2 2552 2758 -556 334 328 156 16 chr3 7269708 7269836 -220254742 + L2 LINE L2 3126 3271 -1 189 0 0 0 chr3 7270118 7270139 -220254439 + (TTCA)n Simple_repeat Simple_repeat 1 21 0 274 256 61 12 chr3 7270140 7270222 -220254356 - L2 LINE L2 -18 3295 3210 2013 83 65 7 chr3 7270290 7270567 -220254011 + AluSx SINE Alu 1 293 -19 1581 181 13 32 chr3 7270644 7270953 -220253625 + AluJo SINE Alu 6 308 -4 2333 81 0 0 chr3 7271138 7271434 -220253144 + AluSx SINE Alu 1 296 -16 1754 106 124 4 chr3 7271624 7271899 -220252679 + AluSg SINE Alu 1 308 -2 1599 135 67 28 chr3 7272012 7272294 -220252284 + AluSx SINE Alu 1 293 -19 787 154 0 8 chr3 7272504 7272634 -220251944 + AluJ SINE Alu 1 129 -173 2092 137 0 0 chr3 7272665 7272972 -220251606 + AluSx SINE Alu 1 307 -5 717 175 0 8 chr3 7272972 7273092 -220251486 - AluJo/FLAM SINE Alu -192 120 2 865 184 0 36 chr3 7273110 7273278 -220251300 + AluJ SINE Alu 129 290 -22 1177 130 0 0 chr3 7273486 7273663 -220250915 + AluSq SINE Alu 133 309 -4 303 170 136 78 chr3 7273680 7273922 -220250656 + L1ME4a LINE L1 5538 5835 -286 264 293 113 7 chr3 7274004 7274154 -220250424 + L1ME4a LINE L1 5956 6121 0 24 0 0 0 chr3 7274160 7274184 -220250394 + AT_rich Low_complexity Low_complexity 1 24 0 1902 94 91 0 chr3 7274645 7274921 -220249657 - AluSg SINE Alu -9 301 1 1937 63 0 0 chr3 7274927 7275166 -220249412 - AluY SINE Alu -1 310 72 22 0 0 0 chr3 7275451 7275473 -220249105 + AT_rich Low_complexity Low_complexity 1 22 0 422 229 83 57 chr3 7275574 7275731 -220248847 + MIR3 SINE MIR 48 208 0 732 144 23 0 chr3 7276801 7276933 -220247645 - L1MA7 LINE L1 -2 6289 6155 2154 105 0 0 chr3 7276996 7277292 -220247286 + AluSx SINE Alu 1 296 -16 587 273 126 25 chr3 7277552 7277790 -220246788 - MIR SINE MIR 0 262 1 1493 158 3 44 chr3 7278068 7278365 -220246213 + AluJo SINE Alu 18 302 -10 865 118 7 29 chr3 7278423 7278559 -220246019 + FLAM_C SINE Alu 1 133 0 1859 118 21 3 chr3 7278661 7278949 -220245629 + AluSx SINE Alu 1 293 -19 268 152 30 0 chr3 7280698 7280764 -220243814 + (TTCA)n Simple_repeat Simple_repeat 3 70 0 1274 228 59 62 chr3 7280873 7281182 -220243396 - MER49 LTR ERV1 0 923 614 1993 139 3 3 chr3 7281182 7281492 -220243086 + AluSx SINE Alu 1 310 -2 1274 228 59 62 chr3 7281492 7281586 -220242992 - MER49 LTR ERV1 -309 614 521 1005 86 0 7 chr3 7281588 7281727 -220242851 + AluYb8 SINE Alu 1 138 -180 2218 106 3 0 chr3 7281729 7282040 -220242538 + AluSx SINE Alu 1 312 0 1130 126 32 24 chr3 7282041 7282381 -220242197 - MER49 LTR ERV1 -389 534 160 2451 52 0 3 chr3 7282381 7282691 -220241887 - AluY SINE Alu -2 309 1 251 295 67 0 chr3 7282867 7282972 -220241606 - L1ME4a LINE L1 0 6121 6010 580 343 18 14 chr3 7283030 7283249 -220241329 - MIR SINE MIR -1 261 42 1947 113 15 95 chr3 7283467 7283529 -220241049 + L1PBa LINE L1 1552 1617 -5246 2048 115 0 29 chr3 7283529 7283842 -220240736 + AluSx SINE Alu 1 304 -8 1947 113 15 95 chr3 7283842 7284188 -220240390 + L1PBa LINE L1 1617 1927 -4936 274 171 157 14 chr3 7284339 7284409 -220240169 + L2 LINE L2 3229 3308 -5 827 213 38 85 chr3 7284514 7284622 -220239956 - MIR SINE MIR -10 252 159 1901 117 40 0 chr3 7284622 7284920 -220239658 + AluSx SINE Alu 1 310 -2 827 213 38 85 chr3 7284920 7285046 -220239532 - MIR SINE MIR -103 159 29 592 326 84 45 chr3 7285754 7286273 -220238305 - L2 LINE L2 -12 3260 2684 222 37 0 0 chr3 7286390 7286417 -220238161 + (TTGG)n Simple_repeat Simple_repeat 2 28 0 1958 126 0 3 chr3 7286417 7286702 -220237876 - AluSx SINE Alu -28 284 1 1306 194 0 68 chr3 7286704 7287028 -220237550 - AluJo SINE Alu -10 302 1 359 203 100 144 chr3 7287157 7287428 -220237150 + MLT1K LTR MaLR 330 588 0 288 0 0 0 chr3 7287511 7287543 -220237035 + (A)n Simple_repeat Simple_repeat 1 32 0 891 266 129 6 chr3 7287696 7288030 -220236548 - L3 LINE CR1 -42 1535 1161 242 116 23 0 chr3 7288130 7288173 -220236405 + (CA)n Simple_repeat Simple_repeat 2 45 0 399 293 73 44 chr3 7288232 7288437 -220236141 - MIR SINE MIR -21 241 31 282 297 14 109 chr3 7289108 7289246 -220235332 - MIR SINE MIR -106 156 32 503 259 45 58 chr3 7289289 7289532 -220235046 + L1MD2 LINE L1 5788 6027 -139 1887 137 14 0 chr3 7289532 7289824 -220234754 - AluJo SINE Alu -16 296 1 624 219 14 0 chr3 7289825 7289971 -220234607 + L1MA10 LINE L1 6174 6321 -13 702 75 0 0 chr3 7289997 7290091 -220234487 + L1PA5 LINE L1 6061 6154 0 29 0 0 0 chr3 7290120 7290149 -220234429 + AT_rich Low_complexity Low_complexity 1 29 0 373 217 43 7 chr3 7290185 7290323 -220234255 + (TA)n Simple_repeat Simple_repeat 1 143 0 254 324 102 25 chr3 7290330 7290561 -220234017 + L2 LINE L2 2791 3037 -276 231 307 86 57 chr3 7290597 7290737 -220233841 + L2 LINE L2 3168 3311 -2 1067 201 0 4 chr3 7290753 7290982 -220233596 - AluSg/x SINE Alu 0 312 85 315 207 0 73 chr3 7290987 7291069 -220233509 - AluSp/q SINE Alu -57 246 171 488 239 33 10 chr3 7291177 7291669 -220232909 + GA-rich Low_complexity Low_complexity 1 503 0 324 294 33 11 chr3 7291673 7291765 -220232813 + polypurine Low_complexity Low_complexity 5 98 0 741 165 8 30 chr3 7291810 7291943 -220232635 - FLAM_C SINE Alu -12 131 2 619 307 99 27 chr3 7292109 7292480 -220232098 + L2 LINE L2 2739 3155 -158 1633 157 31 7 chr3 7292480 7292774 -220231804 - AluJo SINE Alu -6 306 6 619 307 99 27 chr3 7292774 7292858 -220231720 + L2 LINE L2 3155 3232 -81 2213 105 0 0 chr3 7292905 7293200 -220231378 + AluSx SINE Alu 1 295 -17 2140 121 0 6 chr3 7293288 7293602 -220230976 + AluSx SINE Alu 1 312 0 304 205 250 58 chr3 7293633 7293789 -220230789 - L1MC4a LINE L1 -1675 6133 5948 * 319 276 0 61 chr3 7293777 7293875 -220230703 - L1MC4 LINE L1 -1339 6703 6612 2104 81 0 32 chr3 7293929 7294238 -220230340 - AluY SINE Alu -1 310 12 204 268 52 31 chr3 7294350 7294447 -220230131 + MIR SINE MIR 85 183 -79 233 213 82 16 chr3 7294685 7294746 -220229832 - LTR8 LTR ERV1 -389 302 238 180 0 0 0 chr3 7294813 7294833 -220229745 + (TTTA)n Simple_repeat Simple_repeat 1 20 0 2070 100 0 0 chr3 7294835 7295114 -220229464 - AluY SINE Alu -32 279 1 1831 131 52 3 chr3 7295564 7295854 -220228724 - AluSx SINE Alu -8 304 1 627 197 0 16 chr3 7295859 7295981 -220228597 - FRAM SINE Alu 0 176 57 1922 125 3 27 chr3 7296190 7296487 -220228091 + AluSx SINE Alu 1 290 -22 449 274 37 22 chr3 7296487 7296612 -220227966 + MIR3 SINE MIR 58 187 -21 1691 157 13 53 chr3 7296710 7297028 -220227550 + AluSx SINE Alu 1 305 -7 2254 108 0 0 chr3 7297039 7297346 -220227232 + AluSx SINE Alu 1 307 -5 955 145 0 13 chr3 7297346 7297524 -220227054 + AluSg/x SINE Alu 132 307 0 1318 181 115 0 chr3 7297531 7297819 -220226759 - L1MC2 LINE L1 -22 6322 6002 22 0 0 0 chr3 7297820 7297842 -220226736 + AT_rich Low_complexity Low_complexity 1 22 0 1690 171 4 4 chr3 7297891 7298172 -220226406 - AluJb SINE Alu -31 281 1 1941 118 24 10 chr3 7298412 7298708 -220225870 + AluSx SINE Alu 1 300 -12 1014 146 6 0 chr3 7299004 7299175 -220225403 - AluJ SINE Alu 0 312 141 803 167 0 14 chr3 7299226 7299364 -220225214 - AluJ SINE Alu -175 137 2 363 324 171 0 chr3 7299430 7299600 -220224978 + MIR SINE MIR 52 250 -12 877 212 4 100 chr3 7299821 7300062 -220224516 - MER20 DNA MER1_type 0 219 2 334 191 32 0 chr3 7300181 7300244 -220224334 - MER97a DNA MER1_type? -717 177 113 1767 112 6 74 chr3 7300248 7300393 -220224185 + AluSx SINE Alu 1 115 -197 2160 78 28 0 chr3 7300393 7300677 -220223901 + AluSg SINE Alu 14 305 -5 1767 112 6 74 chr3 7300677 7300843 -220223735 + AluSx SINE Alu 115 291 -21 750 138 9 0 chr3 7300852 7300961 -220223617 + FLAM_C SINE Alu 2 111 -32 504 130 6 62 chr3 7300967 7301128 -220223450 + (GGA)n Simple_repeat Simple_repeat 3 154 0 345 263 32 0 chr3 7301155 7301250 -220223328 - MER97c DNA MER1_type? -966 124 27 213 227 0 30 chr3 7301260 7301326 -220223252 + CT-rich Low_complexity Low_complexity 4 67 0 787 163 7 22 chr3 7301404 7301539 -220223039 + FLAM_C SINE Alu 1 133 0 2496 135 46 14 chr3 7301574 7301604 -220222974 + MER65A LTR ERV1 1 29 -416 1905 126 0 0 chr3 7301604 7301875 -220222703 + AluSx SINE Alu 1 271 -41 2496 135 46 14 chr3 7301875 7302275 -220222303 + MER65A LTR ERV1 29 445 0 2012 127 13 0 chr3 7302768 7303067 -220221511 - AluSg SINE Alu -7 303 1 1801 128 3 61 chr3 7303122 7303435 -220221143 - AluSp SINE Alu -18 295 1 2016 123 14 0 chr3 7304020 7304313 -220220265 - AluSx SINE Alu -15 297 1 1989 135 0 3 chr3 7304317 7304621 -220219957 - AluSq SINE Alu -10 303 1 2132 129 0 0 chr3 7304810 7305121 -220219457 - AluSx SINE Alu -1 311 1 2067 118 10 0 chr3 7305694 7305990 -220218588 + AluSq SINE Alu 1 299 -14 2339 107 22 19 chr3 7305991 7306357 -220218221 + L1PA16 LINE L1 5800 6166 0 2198 157 60 35 chr3 7306480 7306932 -220217646 - MLT1C LTR MaLR 0 467 5 677 159 0 90 chr3 7306971 7307081 -220217497 + MER94 DNA DNA 2 98 -36 2091 110 3 13 chr3 7307081 7307380 -220217198 + AluSx SINE Alu 1 296 -16 677 159 0 90 chr3 7307380 7307414 -220217164 + MER94 DNA DNA 98 133 -1 1211 158 63 60 chr3 7307893 7308178 -220216400 - AluJo SINE Alu -4 308 23 242 303 121 0 chr3 7308594 7308693 -220215885 + L2 LINE L2 3161 3271 -1 1536 110 4 25 chr3 7309422 7309667 -220214911 - AluSq SINE Alu -7 306 67 1229 134 113 79 chr3 7309679 7309971 -220214607 - AluJo SINE Alu 0 302 1 224 339 58 35 chr3 7310171 7310263 -220214315 - MIR SINE MIR 0 262 163 1939 121 0 7 chr3 7310263 7310544 -220214034 - AluSg SINE Alu -31 279 1 224 339 58 35 chr3 7310544 7310622 -220213956 - MIR SINE MIR -99 163 88 187 111 0 0 chr3 7310911 7310938 -220213640 + L2 LINE L2 3268 3294 -19 1248 104 0 0 chr3 7311498 7311671 -220212907 - AluSp SINE Alu -9 304 132 1752 137 53 0 chr3 7311761 7312045 -220212533 - AluJb SINE Alu -13 299 1 427 193 23 23 chr3 7312124 7312212 -220212366 - L2 LINE L2 -5 3308 3221 22 0 0 0 chr3 7312324 7312346 -220212232 + AT_rich Low_complexity Low_complexity 1 22 0 1682 150 10 20 chr3 7313148 7313307 -220211271 - AluJo SINE Alu -22 290 134 2067 103 0 63 chr3 7313307 7313638 -220210940 - AluSg SINE Alu 0 310 1 1682 150 10 20 chr3 7313638 7313771 -220210807 - AluJo SINE Alu -178 134 1 382 296 53 59 chr3 7314081 7314250 -220210328 - MER5A DNA MER1_type 0 189 22 1692 157 7 20 chr3 7314949 7315249 -220209329 - AluSx SINE Alu -16 296 1 21 0 0 0 chr3 7316176 7316197 -220208381 + AT_rich Low_complexity Low_complexity 1 21 0 2094 109 3 0 chr3 7316456 7316760 -220207818 + AluSx SINE Alu 1 305 -7 292 357 62 37 chr3 7317745 7318070 -220206508 + LTR16C LTR ERVL 149 481 -10 516 239 93 71 chr3 7318094 7318413 -220206165 + Charlie7 DNA MER1_type 314 624 -1988 1668 192 13 0 chr3 7318413 7318721 -220205857 + AluJo SINE Alu 1 312 0 516 239 93 71 chr3 7318721 7318834 -220205744 + Charlie7 DNA MER1_type 624 2583 -29 774 90 0 0 chr3 7318854 7318954 -220205624 + HY3 scRNA scRNA 1 100 -1 36 23 0 0 chr3 7318959 7319002 -220205576 + AT_rich Low_complexity Low_complexity 1 43 0 457 152 0 43 chr3 7319185 7319277 -220205301 + AluJ/FRAM SINE Alu 223 310 -2 941 202 86 73 chr3 7319323 7319500 -220205078 + L1M4 LINE L1 5016 5189 -957 2021 136 13 0 chr3 7319500 7319808 -220204770 + AluSx SINE Alu 1 312 0 941 202 86 73 chr3 7319808 7319979 -220204599 + L1M4 LINE L1 5189 5372 -774 1813 129 3 45 chr3 7319979 7320290 -220204288 + AluSx SINE Alu 4 301 -11 941 202 86 73 chr3 7320290 7320312 -220204266 + L1M4 LINE L1 5372 5392 -754 242 188 83 0 chr3 7320322 7320370 -220204208 - L2 LINE L2 0 3272 3221 1399 187 16 50 chr3 7320927 7321248 -220203330 - AluJo SINE Alu -2 310 1 1845 147 3 7 chr3 7321710 7322002 -220202576 - AluJb SINE Alu -21 291 1 189 0 0 0 chr3 7322093 7322114 -220202464 + (A)n Simple_repeat Simple_repeat 1 21 0 6293 94 47 10 chr3 7322573 7323507 -220201071 + LTR5 LTR ERVK 1 969 0 1129 123 6 0 chr3 7324599 7324762 -220199816 - AluJ SINE Alu -14 298 135 201 74 0 0 chr3 7325030 7325057 -220199521 + (TTTC)n Simple_repeat Simple_repeat 3 29 0 378 0 0 0 chr3 7325559 7325601 -220198977 + (TA)n Simple_repeat Simple_repeat 1 42 0 234 0 0 0 chr3 7325600 7325626 -220198952 + (CA)n Simple_repeat Simple_repeat 2 27 0 * 280 238 71 0 chr3 7325626 7325710 -220198868 + L1MC4 LINE L1 6614 6703 -1339 288 0 0 0 chr3 7325719 7325751 -220198827 + (TA)n Simple_repeat Simple_repeat 1 32 0 2064 128 0 10 chr3 7325938 7326250 -220198328 - AluSg SINE Alu -1 309 1 1613 169 7 23 chr3 7326253 7326555 -220198023 - AluJb SINE Alu -15 297 1 444 277 98 27 chr3 7326857 7327041 -220197537 + MIR SINE MIR 66 262 0 802 141 8 0 chr3 7327147 7327275 -220197303 - AluJ SINE Alu -173 129 1 1504 106 78 78 chr3 7327355 7327648 -220196930 - AluSx SINE Alu -18 294 2 435 271 21 14 chr3 7328289 7328433 -220196145 - MIR SINE MIR 0 262 118 2284 80 0 7 chr3 7328433 7328733 -220195845 - AluSx SINE Alu -13 299 2 328 209 60 11 chr3 7328745 7328835 -220195743 + MLT1J LTR MaLR 416 615 0 2238 148 50 5 chr3 7329029 7329429 -220195149 - L1MC1 LINE L1 -5 6328 5911 2165 115 0 0 chr3 7329439 7329743 -220194835 - AluSx SINE Alu -8 304 1 860 272 158 14 chr3 7329757 7330125 -220194453 - LTR33 LTR ERVL -52 469 49 1012 167 9 79 chr3 7330132 7330359 -220194219 - AluJo SINE Alu -101 211 1 2029 113 3 3 chr3 7330550 7330842 -220193736 - AluSg SINE Alu -18 292 1 1395 168 40 37 chr3 7331203 7331500 -220193078 - AluJo SINE Alu -14 298 1 697 318 55 4 chr3 7331511 7331747 -220192831 - MIR SINE MIR -2 260 13 27 62 0 0 chr3 7332222 7332270 -220192308 + AT_rich Low_complexity Low_complexity 1 48 0 284 250 261 11 chr3 7332552 7332640 -220191938 - MIR SINE MIR -61 147 38 1192 253 48 24 chr3 7332729 7333065 -220191513 - ERVL LTR ERVL -2323 3441 3098 443 267 0 0 chr3 7333129 7333234 -220191344 + HERVL LTR ERVL 5269 5373 -281 593 181 0 0 chr3 7333235 7333329 -220191249 + AluJb SINE Alu 177 270 -42 2267 92 3 10 chr3 7334408 7334722 -220189856 + AluSp SINE Alu 2 313 0 1022 262 148 10 chr3 7334826 7335250 -220189328 + MLT1J2 LTR MaLR 1 450 0 722 266 28 28 chr3 7335373 7335587 -220188991 + MIR SINE MIR 1 214 -48 1253 102 43 132 chr3 7336711 7336854 -220187724 - L1MA5A LINE L1 -2 6301 6147 1965 134 0 0 chr3 7336854 7337144 -220187434 - AluSq SINE Alu -23 290 1 1253 102 43 132 chr3 7337144 7337189 -220187389 - L1MA5A LINE L1 -156 6147 6100 1911 121 3 16 chr3 7337189 7337496 -220187082 + AluSg SINE Alu 2 304 -6 2246 107 0 0 chr3 7337498 7337808 -220186770 + AluSx SINE Alu 3 312 0 1253 102 43 132 chr3 7337808 7337942 -220186636 - L1MA5A LINE L1 -204 6099 5991 638 193 25 0 chr3 7338095 7338214 -220186364 - AluJb SINE Alu -190 122 1 337 263 150 0 chr3 7338340 7338473 -220186105 - L3 LINE CR1 -153 1424 1272 1349 151 117 30 chr3 7339262 7339527 -220185051 - AluJo SINE Alu -14 298 11 1012 229 162 75 chr3 7339530 7339901 -220184677 + MLT1K LTR MaLR 27 429 -159 2137 104 0 10 chr3 7339946 7340254 -220184324 - AluSx SINE Alu -7 305 1 2231 179 35 31 chr3 7340254 7340333 -220184245 - Charlie1 DNA MER1_type -11 2750 2673 1907 153 0 0 chr3 7340333 7340633 -220183945 - AluSx SINE Alu -12 300 1 2231 179 35 31 chr3 7340633 7341095 -220183483 - Charlie1 DNA MER1_type -88 2673 2207 661 250 14 7 chr3 7341091 7341231 -220183347 - Charlie1 DNA MER1_type -2620 141 1 * 593 27 13 0 chr3 7341324 7341399 -220183179 + (TCTA)n Simple_repeat Simple_repeat 2 77 0 1601 175 14 0 chr3 7341399 7341677 -220182901 - AluJb SINE Alu -27 285 1 298 342 46 97 chr3 7341745 7341812 -220182766 - L2 LINE L2 -2 3270 3201 3113 173 39 22 chr3 7341812 7342253 -220182325 + MER6A DNA MER2_type 1 433 -432 2180 86 0 3 chr3 7342253 7342545 -220182033 - AluSc SINE Alu -18 291 1 2134 105 3 0 chr3 7342546 7342841 -220181737 - AluSx SINE Alu -16 296 1 3113 173 39 22 chr3 7342841 7342992 -220181586 + MER6A DNA MER2_type 432 605 0 298 342 46 97 chr3 7342992 7343357 -220181221 - L2 LINE L2 -71 3201 2860 2117 114 3 0 chr3 7343582 7343879 -220180699 + AluSg SINE Alu 3 300 -10 1504 253 30 39 chr3 7343998 7344214 -220180364 - LTR16A LTR ERVL 0 450 238 2064 123 0 0 chr3 7344214 7344507 -220180071 + AluSx SINE Alu 1 293 -19 1504 253 30 39 chr3 7344507 7344725 -220179853 - LTR16A LTR ERVL -212 238 20 247 356 9 0 chr3 7344895 7345010 -220179568 + L2 LINE L2 2829 2944 -370 1510 153 142 54 chr3 7345168 7345521 -220179057 - MLT1B LTR MaLR -6 384 1 626 283 76 22 chr3 7345616 7345799 -220178779 - MIR SINE MIR -14 248 49 2257 103 0 0 chr3 7345799 7346110 -220178468 + AluSx SINE Alu 1 311 -1 626 283 76 22 chr3 7346110 7346149 -220178429 - MIR SINE MIR -213 49 14 1718 126 0 37 chr3 7346920 7347214 -220177364 - AluJb SINE Alu -18 294 12 974 243 46 102 chr3 7347533 7348015 -220176563 + L2 LINE L2 2196 2650 -664 444 111 0 0 chr3 7348097 7348169 -220176409 - Alu SINE Alu -2 310 239 326 194 97 0 chr3 7348185 7348257 -220176321 - MER20B DNA MER1_type -498 285 207 2112 104 40 0 chr3 7348334 7348632 -220175946 - AluSx SINE Alu -2 310 1 849 205 21 38 chr3 7348635 7348874 -220175704 - MER20B DNA MER1_type -34 749 515 1054 267 140 32 chr3 7348980 7349444 -220175134 - MER20B DNA MER1_type -268 515 2 818 146 0 8 chr3 7349947 7350070 -220174508 + FLAM_C SINE Alu 6 127 -16 578 254 9 111 chr3 7350097 7350192 -220174386 + MIR SINE MIR 20 82 -180 1870 136 0 17 chr3 7350192 7350486 -220174092 - AluSx SINE Alu -23 289 1 578 254 9 111 chr3 7350486 7350607 -220173971 + MIR SINE MIR 82 214 -48 223 316 143 0 chr3 7350618 7350716 -220173862 + L2 LINE L2 3197 3308 -5 1873 113 57 0 chr3 7351173 7351456 -220173122 + AluSx SINE Alu 5 303 -9 649 298 102 80 chr3 7351499 7351939 -220172639 + L2 LINE L2 2814 3263 -9 185 108 27 0 chr3 7352358 7352395 -220172183 + (CCA)n Simple_repeat Simple_repeat 3 40 0 480 295 95 20 chr3 7352694 7352894 -220171684 - MIR SINE MIR -1 261 47 333 239 14 34 chr3 7353737 7353843 -220170735 + MIR SINE MIR 14 116 -92 457 304 125 18 chr3 7353933 7354157 -220170421 + MIR SINE MIR 3 250 -12 716 201 0 29 chr3 7354215 7354354 -220170224 - FLAM_C SINE Alu -3 140 6 2060 123 0 3 chr3 7354615 7354916 -220169662 - AluSx SINE Alu -12 300 1 254 259 111 0 chr3 7355395 7355476 -220169102 + MIR SINE MIR 114 203 -59 502 281 75 48 chr3 7355519 7355814 -220168764 + MLT1L LTR MaLR 3 305 -310 1921 136 0 28 chr3 7355817 7356134 -220168444 + AluJb SINE Alu 1 308 -4 4731 136 16 6 chr3 7356184 7356888 -220167690 - MER50 LTR ERV1 -23 711 1 711 261 96 5 chr3 7356912 7357130 -220167448 + MLT1L LTR MaLR 368 605 -10 2626 97 28 14 chr3 7357192 7357553 -220167025 - THE1C LTR MaLR 0 375 10 529 262 66 20 chr3 7357556 7357855 -220166723 + MLT1I LTR MaLR 61 409 0 793 147 0 29 chr3 7358018 7358154 -220166424 - FLAM_C SINE Alu 0 133 2 1833 153 3 19 chr3 7358232 7358539 -220166039 + AluJb SINE Alu 1 302 -10 22 0 0 0 chr3 7358544 7358566 -220166012 + AT_rich Low_complexity Low_complexity 1 22 0 1993 115 28 0 chr3 7358676 7358964 -220165614 + AluSx SINE Alu 1 296 -16 1988 144 100 17 chr3 7359232 7359592 -220164986 - MLT1B LTR MaLR 0 390 1 264 261 59 34 chr3 7359684 7359803 -220164775 + L2 LINE L2 3173 3294 -19 2214 101 3 7 chr3 7359894 7360201 -220164377 - AluSx SINE Alu -6 306 1 2185 166 69 51 chr3 7360229 7360723 -220163855 - MLT1D LTR MaLR -2 503 1 206 286 0 0 chr3 7360723 7360772 -220163806 + MIR SINE MIR 159 207 -55 292 323 21 0 chr3 7360961 7361054 -220163524 - MIR3 SINE MIR -6 202 108 278 283 76 0 chr3 7361421 7361513 -220163065 + MLT1K LTR MaLR 210 308 -280 1882 124 9 25 chr3 7361895 7362210 -220162368 - AluSx SINE Alu -2 310 1 251 295 67 0 chr3 7362385 7362490 -220162088 - L1ME4a LINE L1 0 6121 6010 593 338 18 14 chr3 7362548 7362767 -220161811 - MIR SINE MIR -1 261 42 1993 110 12 95 chr3 7362985 7363047 -220161531 + L1PBa LINE L1 1552 1618 -5245 2105 108 0 29 chr3 7363047 7363361 -220161217 + AluSx SINE Alu 1 305 -7 1993 110 12 95 chr3 7363361 7363708 -220160870 + L1PBa LINE L1 1618 1927 -4936 274 171 157 14 chr3 7363859 7363929 -220160649 + L2 LINE L2 3229 3308 -5 817 213 38 85 chr3 7364034 7364142 -220160436 - MIR SINE MIR -10 252 159 1862 122 40 0 chr3 7364142 7364438 -220160140 + AluSx SINE Alu 1 308 -4 817 213 38 85 chr3 7364438 7364564 -220160014 - MIR SINE MIR -103 159 29 592 326 84 45 chr3 7365272 7365791 -220158787 - L2 LINE L2 -12 3260 2684 222 37 0 0 chr3 7365908 7365935 -220158643 + (TTGG)n Simple_repeat Simple_repeat 2 28 0 1958 126 0 3 chr3 7365935 7366220 -220158358 - AluSx SINE Alu -28 284 1 1306 194 0 68 chr3 7366222 7366546 -220158032 - AluJo SINE Alu -10 302 1 359 203 100 144 chr3 7366675 7366946 -220157632 + MLT1K LTR MaLR 330 588 0 360 0 0 0 chr3 7367029 7367069 -220157509 + (A)n Simple_repeat Simple_repeat 1 40 0 874 269 129 6 chr3 7367222 7367556 -220157022 - L3 LINE CR1 -42 1535 1161 263 93 23 0 chr3 7367656 7367699 -220156879 + (CA)n Simple_repeat Simple_repeat 2 45 0 399 293 73 44 chr3 7367758 7367963 -220156615 - MIR SINE MIR -21 241 31 268 304 14 109 chr3 7368634 7368772 -220155806 - MIR SINE MIR -106 156 32 503 259 45 58 chr3 7368815 7369058 -220155520 + L1MD2 LINE L1 5788 6027 -139 1887 137 14 0 chr3 7369058 7369350 -220155228 - AluJo SINE Alu -16 296 1 624 219 14 0 chr3 7369351 7369497 -220155081 + L1MA10 LINE L1 6174 6321 -13 702 75 0 0 chr3 7369523 7369617 -220154961 + L1PA5 LINE L1 6061 6154 0 29 0 0 0 chr3 7369646 7369675 -220154903 + AT_rich Low_complexity Low_complexity 1 29 0 373 217 43 7 chr3 7369711 7369849 -220154729 + (TA)n Simple_repeat Simple_repeat 2 144 0 254 324 102 25 chr3 7369856 7370087 -220154491 + L2 LINE L2 2791 3037 -276 231 307 86 57 chr3 7370123 7370263 -220154315 + L2 LINE L2 3168 3311 -2 1800 150 0 25 chr3 7370279 7370459 -220154119 - AluSx SINE Alu 0 312 142 2262 81 3 7 chr3 7370459 7370756 -220153822 - AluSg SINE Alu -13 297 2 1800 150 0 25 chr3 7370756 7370895 -220153683 - AluSx SINE Alu -170 142 1 186 43 0 0 chr3 7370960 7370983 -220153595 + (TA)n Simple_repeat Simple_repeat 1 23 0 1598 153 20 20 chr3 7370983 7371277 -220153301 - AluJb SINE Alu -14 298 5 252 100 0 0 chr3 7371287 7371327 -220153251 + (TG)n Simple_repeat Simple_repeat 1 40 0 1626 177 7 11 chr3 7371327 7371475 -220153103 - AluJo SINE Alu -31 281 133 2292 61 0 52 chr3 7371475 7371801 -220152777 - AluY SINE Alu -2 309 1 863 150 15 0 chr3 7371801 7371934 -220152644 - AluJo SINE Alu -177 135 1 435 301 58 13 chr3 7372033 7372189 -220152389 + MIR SINE MIR 61 223 -39 334 281 47 64 chr3 7372287 7372458 -220152120 - MIR SINE MIR -50 212 45 1517 179 0 32 chr3 7372662 7372974 -220151604 - AluJo SINE Alu 0 312 11 2054 106 10 0 chr3 7373127 7373419 -220151159 - AluSq SINE Alu -18 295 1 468 0 0 0 chr3 7373760 7373812 -220150766 + (TG)n Simple_repeat Simple_repeat 2 53 0 521 208 31 6 chr3 7373877 7373892 -220150686 + CT-rich Low_complexity Low_complexity 1 14 -149 1817 111 47 11 chr3 7373892 7374171 -220150407 - AluSx SINE Alu -23 289 1 521 208 31 6 chr3 7374171 7374314 -220150264 + CT-rich Low_complexity Low_complexity 14 163 0 2253 99 0 0 chr3 7374314 7374617 -220149961 - AluSx SINE Alu -9 303 1 730 157 0 57 chr3 7374617 7374757 -220149821 - AluJo/FLAM SINE Alu -170 132 1 356 259 61 83 chr3 7374807 7375035 -220149543 + MER102b DNA MER1_type 118 340 -1 579 230 182 7 chr3 7375719 7375867 -220148711 + MER5A DNA MER1_type 1 174 -15 782 172 0 8 chr3 7375881 7376015 -220148563 + FLAM_C SINE Alu 1 133 0 327 65 0 0 chr3 7376015 7376061 -220148517 + (GGAA)n Simple_repeat Simple_repeat 3 48 0 1936 117 17 17 chr3 7376113 7376412 -220148166 + AluSx SINE Alu 1 299 -13 1564 180 79 75 chr3 7376461 7376532 -220148046 - Charlie1b DNA MER1_type -2238 523 454 2075 117 0 3 chr3 7376532 7376831 -220147747 + AluSx SINE Alu 1 298 -14 1564 180 79 75 chr3 7376831 7377280 -220147298 - Charlie1b DNA MER1_type -2307 454 1 2071 110 10 0 chr3 7377383 7377682 -220146896 + AluSq SINE Alu 2 303 -10 236 302 15 65 chr3 7377702 7377820 -220146758 + MIR SINE MIR 46 157 -51 2208 65 0 29 chr3 7377820 7378126 -220146452 + AluY SINE Alu 1 297 -14 236 302 15 65 chr3 7378126 7378145 -220146433 + MIR SINE MIR 157 175 -33 189 94 0 0 chr3 7379170 7379202 -220145376 + (GGTTG)n Simple_repeat Simple_repeat 2 33 0 1758 149 0 34 chr3 7379290 7379613 -220144965 - AluSx SINE Alu 0 312 1 271 167 111 0 chr3 7379748 7379802 -220144776 - MIR SINE MIR -80 182 123 646 208 60 24 chr3 7380053 7380221 -220144357 - MIR SINE MIR -17 245 72 280 231 0 0 chr3 7380485 7380537 -220144041 - 5S rRNA rRNA -69 52 1 2184 153 46 57 chr3 7380719 7381147 -220143431 + L1MB4 LINE L1 5709 6133 -47 1599 175 3 3 chr3 7381147 7381432 -220143146 + AluJb SINE Alu 11 295 -17 2184 153 46 57 chr3 7381432 7381480 -220143098 + L1MB4 LINE L1 6133 6180 0 181 200 25 0 chr3 7382123 7382163 -220142415 + L2 LINE L2 3227 3267 -5 2138 117 3 0 chr3 7382240 7382548 -220142030 + AluSq SINE Alu 1 309 -4 676 260 250 32 chr3 7382920 7383232 -220141346 - MLT1K LTR MaLR -3 585 206 275 262 0 0 chr3 7383252 7383313 -220141265 - MLT1K LTR MaLR -523 65 5 336 255 92 10 chr3 7383398 7383496 -220141082 + MIR SINE MIR 2 107 -155 557 245 182 10 chr3 7383511 7383703 -220140875 - MIR SINE MIR -5 257 33 342 76 0 45 chr3 7383930 7383996 -220140582 + (TTCC)n Simple_repeat Simple_repeat 1 63 0 2006 110 3 3 chr3 7384008 7384299 -220140279 - AluSx SINE Alu -21 291 1 222 224 129 12 chr3 7385360 7385445 -220139133 - MIR SINE MIR -69 193 99 336 198 143 11 chr3 7385592 7385683 -220138895 - MER5A DNA MER1_type -83 106 4 1040 148 61 13 chr3 7385780 7386010 -220138568 + MER33 DNA MER1_type 60 300 -24 1563 164 7 14 chr3 7386010 7386296 -220138282 - AluJo SINE Alu -15 297 14 1002 196 23 46 chr3 7386358 7386577 -220138001 + MER20 DNA MER1_type 1 214 -5 333 284 129 32 chr3 7386597 7386752 -220137826 + L2 LINE L2 3137 3306 -7 216 175 175 0 chr3 7387442 7387499 -220137079 + MIR SINE MIR 34 100 -108 2050 116 0 0 chr3 7387545 7387829 -220136749 - AluSc SINE Alu -25 284 1 707 283 0 12 chr3 7388165 7388338 -220136240 + MIR SINE MIR 68 238 -24 230 256 14 145 chr3 7388394 7388601 -220135977 + L2 LINE L2 3001 3180 -92 418 258 144 6 chr3 7388716 7388883 -220135695 + MER102b DNA MER1_type 103 292 -49 277 267 0 27 chr3 7388900 7388975 -220135603 + MER94 DNA DNA 1 73 -61 1244 136 117 0 chr3 7389139 7389227 -220135351 - MER30 DNA MER1_type 0 230 154 2385 52 0 0 chr3 7389227 7389516 -220135062 + AluSc SINE Alu 1 289 -20 1244 136 117 0 chr3 7389516 7389633 -220134945 - MER30 DNA MER1_type -76 154 1 534 225 113 31 chr3 7389638 7389798 -220134780 - MIR SINE MIR -61 201 29 382 283 5 43 chr3 7389906 7390090 -220134488 + CT-rich Low_complexity Low_complexity 2 178 0 1812 142 14 7 chr3 7390097 7390392 -220134186 - AluJb SINE Alu -15 297 1 183 217 0 0 chr3 7390477 7390537 -220134041 + CT-rich Low_complexity Low_complexity 2 61 0 1710 172 3 3 chr3 7391043 7391339 -220133239 + AluJb SINE Alu 1 296 -16 427 118 24 0 chr3 7391502 7391587 -220132991 + GA-rich Low_complexity Low_complexity 2 88 0 2250 100 0 0 chr3 7392187 7392488 -220132090 + AluSx SINE Alu 1 301 -11 193 313 205 0 chr3 7392530 7392613 -220131965 + L2 LINE L2 3155 3254 -18 268 234 0 0 chr3 7392643 7392707 -220131871 + MIR SINE MIR 67 130 -132 440 280 213 14 chr3 7392925 7393132 -220131446 + MIR SINE MIR 14 261 -1 305 276 83 0 chr3 7393849 7393967 -220130611 + MIR SINE MIR 24 152 -56 308 330 144 0 chr3 7394311 7394484 -220130094 - MIR SINE MIR -30 232 35 23 54 0 0 chr3 7394527 7394564 -220130014 + AT_rich Low_complexity Low_complexity 1 37 0 2023 124 0 16 chr3 7394564 7394878 -220129700 + AluSx SINE Alu 2 310 -2 329 244 47 0 chr3 7395001 7395087 -220129491 + L1MC5 LINE L1 7797 7886 -75 33 0 0 0 chr3 7395117 7395150 -220129428 + AT_rich Low_complexity Low_complexity 1 33 0 22 35 0 0 chr3 7395767 7395796 -220128782 + AT_rich Low_complexity Low_complexity 1 29 0 313 269 37 105 chr3 7395882 7396176 -220128402 - L2 LINE L2 0 3313 3040 949 198 40 0 chr3 7396178 7396380 -220128198 + AluJb SINE Alu 87 296 -16 349 273 77 67 chr3 7396380 7396646 -220127932 - L2 LINE L2 -219 3053 2782 643 233 91 6 chr3 7396765 7396941 -220127637 - MER91A DNA MER1_type -2 194 4 198 283 233 33 chr3 7396978 7397098 -220127480 + L2 LINE L2 3125 3268 -4 1916 146 0 3 chr3 7397219 7397514 -220127064 - AluSx SINE Alu -18 294 1 428 268 141 0 chr3 7397698 7397840 -220126738 - MIR3 SINE MIR -8 200 39 277 255 87 47 chr3 7398105 7398254 -220126324 - L2 LINE L2 -421 2893 2739 717 173 8 30 chr3 7398419 7398552 -220126026 + FLAM_C SINE Alu 2 131 -12 339 167 0 0 chr3 7398557 7398623 -220125955 + G-rich Low_complexity Low_complexity 4 69 0 427 363 87 5 chr3 7398635 7398897 -220125681 - L1MDa LINE L1 -2875 3665 2357 253 391 0 0 chr3 7399007 7399168 -220125410 + T-rich Low_complexity Low_complexity 2 162 0 340 313 119 66 chr3 7400917 7401160 -220123418 + L2 LINE L2 3014 3269 -3 848 259 23 100 chr3 7401335 7401817 -220122761 + MER34 LTR ERV1 1 445 -97 726 124 0 0 chr3 7401818 7401915 -220122663 + FLAM_C SINE Alu 21 117 -26 257 77 0 0 chr3 7402182 7402221 -220122357 - MADE1 DNA Mariner 0 80 42 1006 191 19 10 chr3 7402281 7402490 -220122088 + MER82 DNA MER2_type 10 220 -433 431 95 0 0 chr3 7402723 7402786 -220121792 - Alu SINE Alu -7 303 241 1498 264 19 16 chr3 7402787 7403155 -220121423 + MER82 DNA MER2_type 212 580 -73 1000 251 127 39 chr3 7404961 7405128 -220119450 - MLT1F1 LTR MaLR -1 566 415 1573 122 80 0 chr3 7405128 7405365 -220119213 + AluSx SINE Alu 44 299 -13 1000 251 127 39 chr3 7405365 7405642 -220118936 - MLT1F1 LTR MaLR -152 415 104 234 220 20 140 chr3 7406241 7406341 -220118237 + LTR16A1 LTR ERVL 20 107 -350 385 229 99 15 chr3 7406456 7406587 -220117991 + LTR16A1 LTR ERVL 313 454 -3 2103 104 3 0 chr3 7406972 7407259 -220117319 + AluSq SINE Alu 1 288 -25 281 358 9 18 chr3 7407340 7407449 -220117129 + MIR SINE MIR 14 121 -141 1653 158 0 0 chr3 7407499 7407759 -220116819 - AluJo SINE Alu -21 291 32 781 160 40 20 chr3 7407759 7407909 -220116669 - MLT1D LTR MaLR -24 481 329 239 184 118 0 chr3 7407975 7408051 -220116527 + MER77 LTR ERV1 144 228 -377 919 56 17 39 chr3 7408235 7408493 -220116085 + (TG)n Simple_repeat Simple_repeat 1 252 0 661 228 39 22 chr3 7409119 7409299 -220115279 + MER3 DNA MER1_type 1 183 -26 283 301 67 46 chr3 7409510 7409749 -220114829 + L2 LINE L2 2734 2977 -337 2401 59 0 3 chr3 7409818 7410122 -220114456 + AluY SINE Alu 1 303 -8 2083 100 4 0 chr3 7410131 7410411 -220114167 + AluSx SINE Alu 2 282 -30 459 0 0 0 chr3 7410414 7410465 -220114113 + (CATA)n Simple_repeat Simple_repeat 2 52 0 948 236 75 77 chr3 7410583 7411036 -220113542 - MER110A LTR ERV1 -14 454 3 278 301 68 62 chr3 7411065 7411093 -220113485 + L2 LINE L2 3166 3192 -121 354 23 0 0 chr3 7411093 7411136 -220113442 + (TC)n Simple_repeat Simple_repeat 2 44 0 278 301 68 62 chr3 7411136 7411253 -220113325 + L2 LINE L2 3192 3312 -1 333 295 19 9 chr3 7412024 7412129 -220112449 - MLT1K LTR MaLR -6 582 477 794 254 11 0 chr3 7412502 7412679 -220111899 + MER5A DNA MER1_type 3 181 -8 1960 154 0 0 chr3 7412939 7413238 -220111340 - AluSx SINE Alu -13 299 1 1172 98 0 0 chr3 7413264 7413427 -220111151 - AluYa5 SINE Alu -16 295 133 2563 40 0 0 chr3 7413427 7413729 -220110849 - AluYb8 SINE Alu -16 302 1 299 269 172 27 chr3 7413737 7413923 -220110655 + L1ME4a LINE L1 5682 5894 -227 1011 243 109 76 chr3 7413956 7414123 -220110455 - MLT1F1 LTR MaLR -1 566 406 1506 136 81 0 chr3 7414123 7414359 -220110219 + AluSx SINE Alu 44 298 -14 1011 243 109 76 chr3 7414359 7414636 -220109942 - MLT1F1 LTR MaLR -161 406 104 266 333 11 0 chr3 7414758 7414848 -220109730 - MLT1F1 LTR MaLR -498 95 5 669 227 0 0 chr3 7415418 7415537 -220109041 + FLAM_A SINE Alu 5 123 -10 798 267 89 71 chr3 7416679 7416744 -220107834 - MLT1K LTR MaLR -63 525 463 3531 126 4 28 chr3 7416744 7417284 -220107294 - MER1A DNA MER1_type 0 527 1 798 267 89 71 chr3 7417284 7417611 -220106967 - MLT1K LTR MaLR -125 463 126 290 216 0 18 chr3 7417829 7417940 -220106638 + (TTTA)n Simple_repeat Simple_repeat 2 110 0 292 225 113 0 chr3 7417955 7418026 -220106552 + L2 LINE L2 3194 3272 0 2670 120 31 2 chr3 7418043 7418459 -220106119 - MSTA LTR MaLR 0 428 1 520 171 202 0 chr3 7418699 7418828 -220105750 - MER5A DNA MER1_type -29 160 6 479 233 133 13 chr3 7419348 7419498 -220105080 - MIR SINE MIR -74 188 21 911 176 23 0 chr3 7419952 7420128 -220104450 - FRAM SINE Alu -1 175 1 2057 113 7 3 chr3 7420319 7420610 -220103968 + AluSq SINE Alu 1 292 -21 1224 135 45 0 chr3 7420758 7420958 -220103620 - L1MA5A LINE L1 -4 6293 6085 2892 90 37 62 chr3 7421233 7421492 -220103086 + MER39B LTR ERV1 1 246 -407 959 194 105 112 chr3 7421492 7421823 -220102755 + AluSx SINE Alu 1 329 0 2892 90 37 62 chr3 7421823 7422026 -220102552 + MER39B LTR ERV1 246 453 -200 802 238 31 36 chr3 7421998 7422221 -220102357 + Charlie2a DNA MER1_type 1505 1726 -1136 * 2157 156 104 5 chr3 7422221 7422645 -220101933 + Tigger2 DNA MER2_type 1 466 -2252 766 216 0 0 chr3 7422651 7422799 -220101779 + AluSg/x SINE Alu 137 284 -28 228 35 0 0 chr3 7422809 7422838 -220101740 + (CA)n Simple_repeat Simple_repeat 1 29 0 2344 124 48 3 chr3 7422844 7423215 -220101363 + Tigger2 DNA MER2_type 2331 2718 0 2018 213 171 41 chr3 7423218 7423627 -220100951 + Charlie2a DNA MER1_type 1727 2082 -780 2351 113 0 3 chr3 7423627 7423937 -220100641 + AluJo SINE Alu 1 309 -3 2018 213 171 41 chr3 7423937 7424405 -220100173 + Charlie2a DNA MER1_type 2082 2718 -144 3121 124 115 17 chr3 7424983 7425572 -220099006 + LTR24C LTR ERV1 2 466 -1 345 93 0 0 chr3 7425752 7425806 -220098772 + (CA)n Simple_repeat Simple_repeat 1 54 0 260 296 111 19 chr3 7426071 7426233 -220098345 - MIR SINE MIR -67 195 19 600 210 50 22 chr3 7426316 7426497 -220098081 - MIR SINE MIR -49 213 28 2231 107 0 3 chr3 7426821 7427120 -220097458 + AluSx SINE Alu 4 301 -11 21 0 0 0 chr3 7428788 7428809 -220095769 + AT_rich Low_complexity Low_complexity 1 21 0 25 0 0 0 chr3 7429885 7429910 -220094668 + AT_rich Low_complexity Low_complexity 1 25 0 568 229 41 0 chr3 7431219 7431341 -220093237 + FLAM_A SINE Alu 1 127 -6 23 0 0 0 chr3 7431341 7431364 -220093214 + AT_rich Low_complexity Low_complexity 1 23 0 857 200 62 19 chr3 7431898 7432108 -220092470 - MER20 DNA MER1_type 0 219 1 260 275 142 8 chr3 7432580 7432700 -220091878 + L2 LINE L2 2923 3058 -214 609 217 141 30 chr3 7432904 7433102 -220091476 + MIR SINE MIR 43 262 0 235 139 0 0 chr3 7433651 7433687 -220090891 + LTR33 LTR ERVL 3 38 -483 230 299 21 21 chr3 7433954 7434051 -220090527 + LTR33 LTR ERVL 411 507 -14 243 267 28 125 chr3 7434481 7434657 -220089921 + MER5B DNA MER1_type 3 161 -17 272 272 62 0 chr3 7434714 7434795 -220089783 + L2 LINE L2 3150 3235 -37 197 275 114 30 chr3 7435028 7435159 -220089419 - MIR3 SINE MIR -66 142 1 195 229 14 71 chr3 7435466 7435536 -220089042 - MER5A DNA MER1_type -36 153 88 354 259 47 57 chr3 7435757 7435950 -220088628 + MIR3 SINE MIR 3 193 -15 330 45 0 0 chr3 7435958 7436002 -220088576 + (CA)n Simple_repeat Simple_repeat 2 45 0 27 0 0 0 chr3 7439068 7439095 -220085483 + GC_rich Low_complexity Low_complexity 1 27 0 2288 64 4 0 chr3 7440363 7440644 -220083934 - AluY SINE Alu -29 282 1 31 0 0 0 chr3 7441602 7441633 -220082945 + AT_rich Low_complexity Low_complexity 1 31 0 1689 86 9 0 chr3 7441633 7441866 -220082712 - L1MA2 LINE L1 0 6304 6070 1932 144 0 34 chr3 7441955 7442275 -220082303 - AluJo SINE Alu -3 309 1 21 0 0 0 chr3 7443660 7443681 -220080897 + AT_rich Low_complexity Low_complexity 1 21 0 2470 84 0 0 chr3 7444343 7444640 -220079938 - AluSq SINE Alu -16 297 1 2057 121 0 0 chr3 7446919 7447201 -220077377 + AluSx SINE Alu 1 282 -30 207 0 0 0 chr3 7447206 7447229 -220077349 + (CA)n Simple_repeat Simple_repeat 2 24 0 202 222 79 32 chr3 7447288 7447351 -220077227 - MIR3 SINE MIR -14 194 129 961 105 14 0 chr3 7447665 7447808 -220076770 - AluSc SINE Alu -1 308 164 255 219 110 24 chr3 7447866 7447948 -220076630 + L2 LINE L2 3184 3272 0 443 271 7 52 chr3 7448007 7448162 -220076416 - MER103 DNA DNA 0 166 19 337 288 87 62 chr3 7448714 7449082 -220075496 + L2 LINE L2 2919 3295 -18 2163 95 18 7 chr3 7450365 7450668 -220073910 + AluSq SINE Alu 1 306 0 1937 143 7 7 chr3 7450982 7451283 -220073295 + AluSx SINE Alu 1 301 -11 1591 184 41 17 chr3 7452302 7452662 -220071916 + L1MB3 LINE L1 5350 5914 -257 393 39 0 0 chr3 7452662 7452713 -220071865 + (CA)n Simple_repeat Simple_repeat 1 51 0 1591 184 41 17 chr3 7452713 7452768 -220071810 + L1MB3 LINE L1 5914 5966 -205 866 174 30 18 chr3 7452774 7452941 -220071637 + L1MB3 LINE L1 6014 6182 -1 21 71 0 0 chr3 7453026 7453068 -220071510 + AT_rich Low_complexity Low_complexity 1 42 0 1476 186 13 68 chr3 7453643 7453950 -220070628 + AluJb SINE Alu 1 290 -22 476 264 21 7 chr3 7454283 7454423 -220070155 - MIR SINE MIR -48 214 73 1090 101 0 0 chr3 7454481 7454629 -220069949 - Tigger7 DNA MER2_type -1 2490 2343 344 171 100 0 chr3 7454648 7454718 -220069860 - Tigger7 DNA MER2_type -473 77 1 368 259 168 0 chr3 7454915 7455058 -220069520 + MIR3 SINE MIR 38 204 -4 1998 104 45 3 chr3 7455376 7455665 -220068913 + AluSx SINE Alu 1 301 -11 2312 78 7 0 chr3 7455676 7455972 -220068606 + AluY SINE Alu 1 298 -13 842 102 0 121 chr3 7455973 7456139 -220068439 + THE1C LTR MaLR 230 375 0 188 359 60 17 chr3 7456642 7456759 -220067819 - L2 LINE L2 -10 3262 3141 191 297 55 22 chr3 7456785 7456876 -220067702 - MIR3 SINE MIR -14 194 101 6616 33 0 0 chr3 7457028 7457911 -220066667 - L1P2 LINE L1 -669 5485 4603 2345 87 0 3 chr3 7557983 7558283 -219966295 + AluY SINE Alu 1 299 -12 2173 104 3 3 chr3 7558436 7558724 -219965854 + AluSq SINE Alu 1 288 -25 278 358 9 18 chr3 7558805 7558914 -219965664 + MIR SINE MIR 14 121 -141 1762 164 21 3 chr3 7558964 7559250 -219965328 - AluJb SINE Alu -21 291 1 1314 149 0 0 chr3 7559250 7559451 -219965127 - LTR26B LTR ERV1 -327 204 4 415 253 114 32 chr3 7559617 7559775 -219964803 - MIR3 SINE MIR 0 208 38 1071 103 0 7 chr3 7560170 7560316 -219964262 - AluSg/x SINE Alu -30 279 135 412 351 0 0 chr3 7561433 7561544 -219963034 + L2 LINE L2 3157 3267 -5 23 0 0 0 chr3 7561552 7561575 -219963003 + AT_rich Low_complexity Low_complexity 1 23 0 2737 103 8 5 chr3 7561634 7562021 -219962557 + L1PB1 LINE L1 5763 6150 -1 298 347 200 7 chr3 7562915 7563065 -219961513 - MER5A DNA MER1_type -10 179 1 216 210 65 32 chr3 7563085 7563147 -219961431 + L2 LINE L2 3167 3230 -42 216 171 0 0 chr3 7563175 7563210 -219961368 + (TGGA)n Simple_repeat Simple_repeat 3 37 0 377 358 23 6 chr3 7563585 7563761 -219960817 + MIR3 SINE MIR 17 195 -13 1862 199 16 101 chr3 7563853 7564400 -219960178 + MLT1D LTR MaLR 3 503 -2 220 324 14 0 chr3 7564580 7564654 -219959924 + (TA)n Simple_repeat Simple_repeat 1 75 0 208 274 170 28 chr3 7564899 7565005 -219959573 - MIR3 SINE MIR -4 204 84 315 281 183 7 chr3 7565381 7565534 -219959044 - MIR3 SINE MIR -14 194 15 227 291 0 0 chr3 7566441 7566496 -219958082 - MIR3 SINE MIR 0 208 154 412 263 53 0 chr3 7566498 7566631 -219957947 + MER117 DNA MER1_type 2 141 -56 198 208 260 39 chr3 7566687 7566764 -219957814 - MIR3 SINE MIR -52 156 63 206 373 15 0 chr3 7567137 7567204 -219957374 - L2 LINE L2 -7 3265 3198 2230 123 3 0 chr3 7567371 7567680 -219956898 + AluSq SINE Alu 1 310 -3 1215 260 59 52 chr3 7567770 7568231 -219956347 - L1ME3A LINE L1 -1 6169 5706 457 78 16 0 chr3 7568253 7568317 -219956261 - MER41B LTR ERV1 -90 545 481 1108 287 89 2 chr3 7568317 7568711 -219955867 - L1ME3A LINE L1 -452 5718 5291 842 228 216 8 chr3 7568788 7569266 -219955312 - LTR50 LTR ERVL 0 795 124 1521 164 115 86 chr3 7569408 7569925 -219954653 - LTR36 LTR ERV1 0 611 1 643 187 66 30 chr3 7569943 7570130 -219954448 - MIR SINE MIR -21 241 47 1313 178 24 0 chr3 7571037 7571250 -219953328 - AluJo SINE Alu -86 226 9 357 301 56 109 chr3 7571291 7571666 -219952912 + L2 LINE L2 2918 3272 0 2098 196 107 11 chr3 7572068 7572350 -219952228 - MLT1D LTR MaLR 0 505 161 1774 174 13 30 chr3 7572350 7572649 -219951929 - AluJo SINE Alu -18 294 1 2098 196 107 11 chr3 7572649 7572824 -219951754 - MLT1D LTR MaLR -344 161 4 22 35 0 0 chr3 7574404 7574433 -219950145 + AT_rich Low_complexity Low_complexity 1 29 0 278 296 61 17 chr3 7574911 7575026 -219949552 + MIR SINE MIR 137 256 -6 31 76 0 0 chr3 7575378 7575444 -219949134 + AT_rich Low_complexity Low_complexity 1 66 0 351 78 0 0 chr3 7575693 7575744 -219948834 + (TG)n Simple_repeat Simple_repeat 2 52 0 337 276 0 11 chr3 7575746 7575833 -219948745 - LTR67 LTR ERVL -12 545 460 345 235 43 17 chr3 7575842 7575957 -219948621 - L1ME LINE L1 -374 5747 5630 298 290 30 53 chr3 7576489 7576620 -219947958 + L2 LINE L2 3182 3309 -4 201 237 0 0 chr3 7577348 7577407 -219947171 + (TA)n Simple_repeat Simple_repeat 2 60 0 721 251 55 90 chr3 7577473 7577854 -219946724 + MLT1I LTR MaLR 31 402 -7 203 296 59 89 chr3 7577863 7577998 -219946580 - MIR SINE MIR -61 147 17 448 305 68 34 chr3 7579141 7579179 -219945399 - Charlie8 DNA MER1_type -4 1413 1378 393 22 0 0 chr3 7579179 7579225 -219945353 + (CA)n Simple_repeat Simple_repeat 2 47 0 448 305 68 34 chr3 7579225 7579485 -219945093 - Charlie8 DNA MER1_type -39 1378 5 331 195 26 26 chr3 7580010 7580087 -219944491 - MLT1L LTR MaLR -536 79 3 200 298 0 0 chr3 7580102 7580159 -219944419 - L2 LINE L2 -2 3311 3255 21 36 0 0 chr3 7580236 7580264 -219944314 + AT_rich Low_complexity Low_complexity 1 28 0 1061 267 70 26 chr3 7580297 7580862 -219943716 - L2 LINE L2 -159 3154 2570 1794 161 7 20 chr3 7580891 7581189 -219943389 + AluJb SINE Alu 1 294 -18 207 0 0 0 chr3 7581192 7581215 -219943363 + (TA)n Simple_repeat Simple_repeat 2 24 0 223 338 13 0 chr3 7582358 7582435 -219942143 - MIR SINE MIR -63 145 68 192 293 35 0 chr3 7583163 7583221 -219941357 + MIR3 SINE MIR 112 171 -37 375 301 155 14 chr3 7583934 7584153 -219940425 - MIR SINE MIR 0 262 13 203 79 26 0 chr3 7585150 7585188 -219939390 + (TTTTG)n Simple_repeat Simple_repeat 2 40 0 911 146 189 5 chr3 7586031 7586216 -219938362 - MER20 DNA MER1_type 0 219 1 23 0 0 0 chr3 7586379 7586402 -219938176 + AT_rich Low_complexity Low_complexity 1 23 0 2270 112 0 0 chr3 7586430 7586733 -219937845 - AluSx SINE Alu -9 303 1 330 365 0 0 chr3 7586889 7587004 -219937574 - MIR3 SINE MIR -23 185 71 291 163 0 0 chr3 7587004 7587053 -219937525 + L1MC3 LINE L1 7045 7093 -692 283 262 24 12 chr3 7587057 7587141 -219937437 + MLT1F1 LTR MaLR 40 124 -443 2087 191 66 58 chr3 7587147 7587737 -219936841 + L1MC3 LINE L1 7191 7785 0 2202 112 0 13 chr3 7588524 7588827 -219935751 - AluSx SINE Alu -13 299 1 2071 124 0 0 chr3 7589828 7590133 -219934445 + AluSx SINE Alu 1 305 0 522 281 67 12 chr3 7590547 7590711 -219933867 - MER5B DNA MER1_type 0 178 6 273 87 0 43 chr3 7591423 7591469 -219933109 + L2 LINE L2 3195 3238 -75 2165 108 3 0 chr3 7592081 7592376 -219932202 + AluSp SINE Alu 1 296 -17 388 363 57 6 chr3 7592564 7592721 -219931857 - MIR3 SINE MIR -24 184 20 28 0 0 0 chr3 7592829 7592857 -219931721 + AT_rich Low_complexity Low_complexity 1 28 0 1734 190 7 3 chr3 7592905 7593200 -219931378 + AluSx SINE Alu 1 296 -16 21 0 0 0 chr3 7593277 7593298 -219931280 + AT_rich Low_complexity Low_complexity 1 21 0 2361 123 5 32 chr3 7596714 7597088 -219927490 - THE1B LTR MaLR 0 364 1 8147 127 30 8 chr3 7597417 7598729 -219925849 - Tigger1 DNA MER2_type 0 2418 1079 3596 134 107 6 chr3 7598718 7599354 -219925224 - Tigger1 DNA MER2_type -1656 762 63 * 341 211 273 19 chr3 7601206 7601367 -219923211 - L1MC4a LINE L1 -1859 5949 5748 1690 80 0 0 chr3 7601502 7601715 -219922863 + AluSg SINE Alu 1 213 -97 401 236 183 21 chr3 7601757 7601948 -219922630 - L1MC4a LINE L1 -2291 5517 5296 549 300 143 29 chr3 7601984 7602528 -219922050 - L1MC4a LINE L1 -908 5238 4633 26 0 0 0 chr3 7602799 7602825 -219921753 + AT_rich Low_complexity Low_complexity 1 26 0 385 225 36 94 chr3 7603886 7603994 -219920584 + L2 LINE L2 3182 3282 -31 2533 92 30 11 chr3 7603994 7604362 -219920216 - THE1C LTR MaLR 0 375 1 385 225 36 94 chr3 7604362 7604391 -219920187 + L2 LINE L2 3282 3311 -2 562 280 13 13 chr3 7604395 7604545 -219920033 + MIR SINE MIR 34 183 -79 1659 191 40 3 chr3 7604798 7605123 -219919455 + MER1B DNA MER1_type 1 337 0 266 284 105 11 chr3 7605214 7605309 -219919269 - L3 LINE CR1 -278 1299 1196 305 261 76 32 chr3 7605883 7606040 -219918538 - L1ME LINE L1 -283 5838 5675 269 254 211 7 chr3 7606057 7606199 -219918379 - L1ME LINE L1 -1445 4701 4531 1896 147 18 0 chr3 7607095 7607380 -219917198 + AluJb SINE Alu 9 298 -14 254 267 67 33 chr3 7607620 7607710 -219916868 + MIR SINE MIR 13 105 -157 1088 122 0 33 chr3 7610864 7611044 -219913534 + AluSg/x SINE Alu 124 297 -12 186 43 0 0 chr3 7611355 7611378 -219913200 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 24 32 0 0 chr3 7614399 7614430 -219910148 + AT_rich Low_complexity Low_complexity 1 31 0 427 255 135 20 chr3 7616204 7616404 -219908174 - MIR SINE MIR -9 253 31 256 282 0 113 chr3 7616914 7617038 -219907540 - MIR3 SINE MIR -12 196 87 2463 66 0 0 chr3 7617707 7618010 -219906568 - AluY SINE Alu -8 303 1 244 376 60 8 chr3 7618120 7618237 -219906341 + L2 LINE L2 3191 3313 0 276 274 140 18 chr3 7619304 7619361 -219905217 + L1MC/D LINE L1 5352 5401 -2407 1709 149 72 0 chr3 7619361 7619637 -219904941 - AluSx SINE Alu -16 296 1 276 274 140 18 chr3 7619637 7619743 -219904835 + L1MC/D LINE L1 5401 5535 -2273 515 297 0 0 chr3 7619915 7620026 -219904552 - MER81 DNA DNA 0 114 4 709 254 215 0 chr3 7620745 7620950 -219903628 + MIR SINE MIR 6 254 -8 391 352 49 6 chr3 7621218 7621380 -219903198 + MIR SINE MIR 81 249 -13 474 315 34 0 chr3 7621682 7621828 -219902750 + MER117 DNA MER1_type 11 161 -36 220 214 18 18 chr3 7621875 7621931 -219902647 + (TG)n Simple_repeat Simple_repeat 1 56 0 475 233 302 0 chr3 7621975 7622147 -219902431 - MIR SINE MIR -10 252 29 2306 67 35 0 chr3 7622149 7622432 -219902146 - AluY SINE Alu -18 293 1 1852 156 3 7 chr3 7623205 7623506 -219901072 + AluJb SINE Alu 1 300 -12 505 288 113 19 chr3 7624033 7624245 -219900333 + HAL1 LINE L1 434 665 -1842 442 300 88 0 chr3 7624431 7624714 -219899864 + HAL1 LINE L1 984 1291 -1216 1837 238 175 50 chr3 7624716 7625635 -219898943 + HAL1 LINE L1 1340 2373 -134 212 292 79 22 chr3 7626063 7626152 -219898426 - MIR3 SINE MIR -25 183 90 2104 141 13 0 chr3 7626283 7626589 -219897989 + AluJo SINE Alu 1 310 -2 1676 209 107 43 chr3 7626942 7627454 -219897124 + MER90 LTR ERV1 70 614 0 575 204 160 18 chr3 7628055 7628280 -219896298 + MER112 DNA MER1_type 4 260 0 1688 148 17 31 chr3 7629665 7629956 -219894622 - AluJb SINE Alu -17 295 9 226 229 0 0 chr3 7630476 7630537 -219894041 + T-rich Low_complexity Low_complexity 1 61 0 8156 14 0 0 chr3 7630539 7631772 -219892806 - L1HS LINE L1 0 6155 4923 833 129 103 189 chr3 7632008 7632142 -219892436 + MER33 DNA MER1_type 1 145 -2440 1720 167 20 7 chr3 7632142 7632436 -219892142 - AluJb SINE Alu -14 298 1 833 129 103 189 chr3 7632436 7632651 -219891927 + MER33 DNA MER1_type 145 320 -4 533 236 48 36 chr3 7632878 7633043 -219891535 - MER5B DNA MER1_type -1 177 11 264 375 17 0 chr3 7633338 7633458 -219891120 + MIR SINE MIR 8 129 -133 854 131 77 0 chr3 7633647 7633777 -219890801 - FRAM SINE Alu -17 159 20 598 109 148 10 chr3 7633826 7633927 -219890651 + FLAM_C SINE Alu 5 119 -24 23 0 0 0 chr3 7633932 7633955 -219890623 + AT_rich Low_complexity Low_complexity 1 23 0 4654 90 17 21 chr3 7634426 7634620 -219889958 + PABL_A LTR ERV1 1 194 -466 2233 94 0 7 chr3 7634620 7634917 -219889661 - AluSx SINE Alu -17 295 1 4654 90 17 21 chr3 7634917 7635376 -219889202 + PABL_A LTR ERV1 194 651 -9 1798 100 37 23 chr3 7636983 7637283 -219887295 - AluSq SINE Alu -9 304 1 1022 210 189 7 chr3 7637841 7638055 -219886523 + MER2 DNA MER2_type 1 283 -61 2327 94 0 0 chr3 7638055 7638354 -219886224 - AluSx SINE Alu -9 303 5 1022 210 189 7 chr3 7638354 7638430 -219886148 + MER2 DNA MER2_type 283 344 0 272 70 23 0 chr3 7638430 7638473 -219886105 + (GA)n Simple_repeat Simple_repeat 1 44 0 3013 251 57 23 chr3 7638501 7639531 -219885047 + L1ME1 LINE L1 3292 4356 -1790 2794 233 45 80 chr3 7639575 7639633 -219884945 + L1ME1 LINE L1 5353 5412 -754 1522 193 14 14 chr3 7639633 7639918 -219884660 + AluJb SINE Alu 1 285 -27 2794 233 45 80 chr3 7639918 7639980 -219884598 + L1ME1 LINE L1 5412 5475 -691 2060 131 7 0 chr3 7639980 7640271 -219884307 - AluSg SINE Alu -17 293 1 2794 233 45 80 chr3 7640271 7640774 -219883804 + L1ME1 LINE L1 5475 5994 -172 2196 112 0 0 chr3 7640774 7641068 -219883510 + AluSg SINE Alu 1 294 -16 2794 233 45 80 chr3 7641068 7641251 -219883327 + L1ME1 LINE L1 5994 6111 -55 2008 138 153 42 chr3 7641251 7641324 -219883254 - MSTA LTR MaLR 0 428 365 2441 49 0 30 chr3 7641324 7641629 -219882949 + AluY SINE Alu 1 296 -15 2008 138 153 42 chr3 7641629 7641940 -219882638 - MSTA LTR MaLR -63 365 1 2794 233 45 80 chr3 7641940 7641989 -219882589 + L1ME1 LINE L1 6111 6160 -6 1738 139 58 41 chr3 7642455 7642750 -219881828 + AluSx SINE Alu 1 300 -12 180 77 0 0 chr3 7643089 7643115 -219881463 + (TTCA)n Simple_repeat Simple_repeat 1 26 0 546 278 131 0 chr3 7643190 7643366 -219881212 - MIR SINE MIR -32 230 32 670 178 8 0 chr3 7643706 7643824 -219880754 - MLT1D LTR MaLR 0 505 387 2266 104 0 0 chr3 7644033 7644331 -219880247 - AluSx SINE Alu -3 309 12 1523 192 3 36 chr3 7644554 7644862 -219879716 + AluJo SINE Alu 1 298 -14 858 168 0 0 chr3 7644906 7645031 -219879547 + AluJb SINE Alu 1 125 -187 1845 158 18 0 chr3 7645892 7646176 -219878402 + AluJo SINE Alu 1 289 -23 480 62 37 0 chr3 7646186 7646267 -219878311 + (TA)n Simple_repeat Simple_repeat 1 84 0 216 144 22 0 chr3 7646538 7646584 -219877994 + MIR SINE MIR 99 146 -62 2004 137 0 22 chr3 7646699 7647014 -219877564 + AluSx SINE Alu 3 310 -2 4460 183 19 25 chr3 7647295 7648175 -219876403 - L1MB8 LINE L1 0 6178 5304 833 199 6 0 chr3 7648178 7648334 -219876244 - FRAM SINE Alu 0 40 1 2054 181 57 53 chr3 7648336 7648464 -219876114 - L1MB8 LINE L1 -830 5316 5190 2039 125 4 4 chr3 7648464 7648766 -219875812 - AluSx SINE Alu 0 302 1 2054 181 57 53 chr3 7648766 7648891 -219875687 - L1MB8 LINE L1 -956 5190 5067 2267 110 0 10 chr3 7648891 7649200 -219875378 + AluSx SINE Alu 6 311 -1 2054 181 57 53 chr3 7649200 7649469 -219875109 - L1MB8 LINE L1 -1079 5067 4789 297 172 16 141 chr3 7649890 7650018 -219874560 + MLT1H LTR MaLR 438 549 0 376 249 115 91 chr3 7650106 7650164 -219874414 - L1ME4a LINE L1 -232 5889 5834 1887 135 7 0 chr3 7650164 7650445 -219874133 + AluSg SINE Alu 13 295 -15 376 249 115 91 chr3 7650445 7650639 -219873939 - L1ME4a LINE L1 -287 5834 5631 2154 102 10 7 chr3 7650886 7651180 -219873398 + AluSq SINE Alu 1 295 -18 185 0 0 39 chr3 7651285 7651311 -219873267 + (TTTG)n Simple_repeat Simple_repeat 2 26 0 209 173 154 19 chr3 7651398 7651450 -219873128 + L2 LINE L2 3252 3310 -3 2240 100 0 3 chr3 7651470 7651759 -219872819 + AluSx SINE Alu 1 288 -24 276 284 0 68 chr3 7654554 7654642 -219869936 - L2 LINE L2 -23 3249 3168 213 39 0 0 chr3 7655828 7655854 -219868724 + (TTG)n Simple_repeat Simple_repeat 2 27 0 248 385 57 0 chr3 7657051 7657173 -219867405 + MIR SINE MIR 21 149 -113 1029 186 9 24 chr3 7658760 7658901 -219865677 + MER3 DNA MER1_type 2 141 -68 1936 143 7 7 chr3 7658901 7659188 -219865390 + AluSx SINE Alu 1 287 -25 1029 186 9 24 chr3 7659188 7659256 -219865322 + MER3 DNA MER1_type 141 208 -1 299 269 86 30 chr3 7659350 7659584 -219864994 + L1ME4a LINE L1 5873 6119 -2 685 224 39 86 chr3 7659671 7659926 -219864652 + MER112 DNA MER1_type 6 248 -12 1263 124 0 43 chr3 7660057 7660243 -219864335 + AluSx SINE Alu 1 178 -134 424 246 53 18 chr3 7660906 7661020 -219863558 + MIR3 SINE MIR 14 131 -77 1848 146 35 0 chr3 7662044 7662215 -219862363 - AluSx SINE Alu -14 298 112 414 0 0 0 chr3 7662215 7662261 -219862317 + (TTA)n Simple_repeat Simple_repeat 2 47 0 1848 146 35 0 chr3 7662261 7662377 -219862201 - AluSx SINE Alu -200 112 1 257 109 455 0 chr3 7662766 7662821 -219861757 + MADE1 DNA Mariner 1 80 0 2170 100 7 0 chr3 7663272 7663583 -219860995 + AluSx SINE Alu 1 313 0 1900 167 0 0 chr3 7663602 7663890 -219860688 - AluJb SINE Alu -19 293 6 939 117 7 15 chr3 7663890 7664027 -219860551 - AluJb SINE Alu -176 136 1 339 314 58 19 chr3 7664185 7664341 -219860237 - MIR3 SINE MIR -8 200 39 2003 140 10 0 chr3 7664537 7664830 -219859748 + AluSx SINE Alu 1 296 -16 210 333 0 43 chr3 7665405 7665474 -219859104 - L3 LINE CR1 -4 1573 1508 1005 190 20 20 chr3 7665533 7665733 -219858845 - MER20 DNA MER1_type -19 200 1 760 222 102 9 chr3 7666173 7666389 -219858189 + MIR SINE MIR 14 249 -13 206 310 113 0 chr3 7666738 7666809 -219857769 + MIR SINE MIR 29 107 -155 2442 77 0 3 chr3 7666944 7667254 -219857324 - AluY SINE Alu -2 309 1 242 253 24 60 chr3 7667358 7667441 -219857137 - MIR SINE MIR -81 127 48 2130 116 3 16 chr3 7668229 7668539 -219856039 + AluSx SINE Alu 4 309 -3 3547 152 48 2 chr3 7668540 7669146 -219855432 + L1MB3 LINE L1 5550 6183 0 530 241 195 0 chr3 7669201 7669375 -219855203 - MIR SINE MIR -6 256 49 545 268 87 70 chr3 7669651 7669950 -219854628 - MER5C DNA MER1_type 0 324 21 253 348 38 52 chr3 7670142 7670352 -219854226 - L2 LINE L2 -544 2770 2564 248 307 44 18 chr3 7671177 7671291 -219853287 + MER69A DNA AcHobo 1 117 -60 1798 191 68 28 chr3 7671296 7671493 -219853085 - L1MD2 LINE L1 -1 6358 6170 2253 110 3 0 chr3 7671493 7671803 -219852775 - AluSx SINE Alu -1 311 1 1798 191 68 28 chr3 7671803 7672004 -219852574 - L1MD2 LINE L1 -189 6170 5944 314 245 96 11 chr3 7672004 7672098 -219852480 + MER69A DNA AcHobo 76 177 0 2531 57 0 22 chr3 7672380 7672698 -219851880 + AluY SINE Alu 1 311 0 22 0 0 0 chr3 7673087 7673109 -219851469 + AT_rich Low_complexity Low_complexity 1 22 0 212 315 23 62 chr3 7673144 7673273 -219851305 - MIR SINE MIR -75 133 2 1881 72 103 4 chr3 7673344 7673606 -219850972 + AluSc SINE Alu 5 292 -17 285 217 0 17 chr3 7673960 7674020 -219850558 - MER91 DNA MER1_type -80 60 2 202 296 14 28 chr3 7674645 7674716 -219849862 + MIR SINE MIR 20 89 -119 232 222 123 0 chr3 7674905 7674986 -219849592 + MIR3 SINE MIR 102 192 -16 204 278 46 65 chr3 7675585 7675693 -219848885 - MIR SINE MIR -59 149 69 3562 119 12 2 chr3 7676029 7676535 -219848043 - L1PB3 LINE L1 0 6154 5644 812 84 0 19 chr3 7676575 7676682 -219847896 - FLAM_A SINE Alu -16 126 22 305 265 34 23 chr3 7678433 7678562 -219846016 - MIR SINE MIR -58 150 20 480 218 247 6 chr3 7679012 7679182 -219845396 - MIR SINE MIR -1 261 51 1904 128 16 26 chr3 7679182 7679488 -219845090 - AluSx SINE Alu -9 303 1 201 211 0 0 chr3 7679789 7679841 -219844737 + (CA)n Simple_repeat Simple_repeat 1 52 0 231 254 140 18 chr3 7680478 7680592 -219843986 - MIR3 SINE MIR -80 128 1 1824 185 0 3 chr3 7682259 7682557 -219842021 + AluJo SINE Alu 1 297 -15 582 250 152 10 chr3 7682869 7683073 -219841505 + MIR SINE MIR 16 248 -14 1991 140 13 0 chr3 7683194 7683501 -219841077 - AluSx SINE Alu -1 311 1 240 234 261 0 chr3 7683604 7683715 -219840863 - MIR3 SINE MIR -29 179 40 279 315 109 25 chr3 7683816 7684054 -219840524 - L2 LINE L2 -825 2489 2232 2320 106 0 3 chr3 7684401 7684703 -219839875 - AluSx SINE Alu -11 301 1 320 316 18 9 chr3 7685199 7685313 -219839265 + L2 LINE L2 3158 3272 0 1903 145 3 3 chr3 7685487 7685769 -219838809 - AluSx SINE Alu -30 282 1 890 45 0 0 chr3 7685843 7685953 -219838625 + L1PA4 LINE L1 6046 6155 0 355 283 145 0 chr3 7686405 7686543 -219838035 - MIR SINE MIR -65 197 40 2090 130 0 3 chr3 7687357 7687650 -219836928 + AluSg SINE Alu 3 294 -16 2222 114 23 0 chr3 7687752 7688051 -219836527 + AluJb SINE Alu 1 306 -6 826 169 0 0 chr3 7688635 7688765 -219835813 - FLAM_A SINE Alu -1 132 3 264 350 57 13 chr3 7688848 7689005 -219835573 + MIR3 SINE MIR 45 208 0 1951 223 47 10 chr3 7689163 7689670 -219834908 - L1M4 LINE L1 -1208 4938 4413 1221 181 42 0 chr3 7689688 7689903 -219834675 - MER58A DNA MER1_type 0 224 1 2168 98 28 0 chr3 7690331 7690617 -219833961 - AluSx SINE Alu -18 294 1 1697 195 7 0 chr3 7691365 7691657 -219832921 + AluJb SINE Alu 1 294 -18 216 0 0 0 chr3 7691658 7691682 -219832896 + (CA)n Simple_repeat Simple_repeat 2 25 0 680 149 79 0 chr3 7691778 7691892 -219832686 - FLAM_C SINE Alu -19 124 2 201 386 30 0 chr3 7692006 7692107 -219832471 + L2 LINE L2 3169 3272 0 257 267 150 0 chr3 7692172 7692292 -219832286 + L1ME LINE L1 5705 5842 -279 2520 87 0 0 chr3 7692354 7692663 -219831915 + AluSg SINE Alu 1 309 -1 22 0 0 0 chr3 7692824 7692846 -219831732 + AT_rich Low_complexity Low_complexity 1 22 0 270 0 0 0 chr3 7693578 7693608 -219830970 + (GA)n Simple_repeat Simple_repeat 1 30 0 1636 169 6 49 chr3 7694624 7694949 -219829629 - AluJo SINE Alu -1 311 1 768 209 12 6 chr3 7694985 7695148 -219829430 - MER5A DNA MER1_type -25 164 1 322 292 93 83 chr3 7695548 7695849 -219828729 + L2 LINE L2 2960 3263 -9 183 302 52 10 chr3 7696976 7697072 -219827506 + L2 LINE L2 2563 2662 -652 2163 101 0 3 chr3 7697451 7697747 -219826831 - AluSc SINE Alu -14 295 1 1759 128 7 40 chr3 7698373 7698670 -219825908 - AluJb SINE Alu -13 299 13 845 223 36 16 chr3 7698670 7698863 -219825715 - MER58A DNA MER1_type -9 215 19 287 246 144 8 chr3 7699114 7699232 -219825346 + L2 LINE L2 3170 3303 -10 2349 98 7 0 chr3 7699502 7699809 -219824769 + AluSp SINE Alu 1 309 -4 537 188 240 19 chr3 7700069 7700223 -219824355 + MER53 DNA DNA 2 189 0 213 121 0 0 chr3 7700401 7700434 -219824144 + (TCTA)n Simple_repeat Simple_repeat 2 34 0 267 315 63 14 chr3 7700472 7700615 -219823963 + MIR SINE MIR 12 161 -101 184 358 0 0 chr3 7700765 7700832 -219823746 + L2 LINE L2 3205 3271 -1 2272 128 0 0 chr3 7701101 7701406 -219823172 - AluSg SINE Alu -5 305 1 449 222 104 22 chr3 7704154 7704289 -219820289 - L2 LINE L2 -5 3267 3122 2119 90 54 0 chr3 7704656 7704934 -219819644 + AluSq SINE Alu 1 293 -20 24 96 0 0 chr3 7706678 7706751 -219817827 + AT_rich Low_complexity Low_complexity 1 73 0 521 275 6 25 chr3 7707486 7707646 -219816932 - MIR SINE MIR -72 190 34 322 295 25 0 chr3 7708241 7708363 -219816215 + L2 LINE L2 2199 2323 -991 872 225 69 23 chr3 7708373 7708635 -219815943 - L1MB4 LINE L1 0 6180 5907 275 250 70 20 chr3 7709800 7709900 -219814678 + MIR SINE MIR 81 185 -77 2058 140 7 0 chr3 7709909 7710209 -219814369 + AluSx SINE Alu 1 302 -10 226 246 33 0 chr3 7710742 7710803 -219813775 - MER5B DNA MER1_type 0 178 116 709 191 112 27 chr3 7710840 7711028 -219813550 + MER20 DNA MER1_type 16 219 0 1071 178 28 0 chr3 7711152 7711332 -219813246 - MER5A DNA MER1_type -2 187 3 1602 112 31 5 chr3 7712071 7712295 -219812283 + MER30 DNA MER1_type 1 230 0 566 255 28 0 chr3 7712313 7712458 -219812120 - MIR SINE MIR -87 175 27 2379 99 3 0 chr3 7712460 7712762 -219811816 - AluSq SINE Alu -10 303 1 608 248 62 6 chr3 7712882 7713043 -219811535 + Charlie8 DNA MER1_type 11 180 -2237 538 208 53 52 chr3 7713044 7713220 -219811358 + MSTC LTR MaLR 1 180 -185 274 126 24 0 chr3 7713219 7713280 -219811298 + MSTB2 LTR MaLR 308 431 -26 * 235 280 156 53 chr3 7713445 7713670 -219810908 + L2 LINE L2 2916 3163 -150 538 252 63 15 chr3 7713691 7713861 -219810717 + MIR SINE MIR 13 196 -66 2242 120 0 0 chr3 7713861 7714162 -219810416 + AluSx SINE Alu 1 301 -11 538 252 63 15 chr3 7714162 7714197 -219810381 + MIR SINE MIR 196 228 -34 278 149 21 0 chr3 7714234 7714281 -219810297 + Charlie8 DNA MER1_type 2364 2411 -6 357 62 0 0 chr3 7714677 7714725 -219809853 + (CA)n Simple_repeat Simple_repeat 1 48 0 213 39 0 0 chr3 7714724 7714750 -219809828 + (GA)n Simple_repeat Simple_repeat 2 27 0 * 1203 222 108 7 chr3 7714760 7715057 -219809521 + MER2 DNA MER2_type 6 332 -13 25810 64 4 9 chr3 7715287 7718608 -219805970 - L1P LINE L1 -2831 3315 11 616 239 119 26 chr3 7718627 7718965 -219805613 + MLT1G LTR MaLR 153 588 -2 1791 152 20 10 chr3 7721266 7721562 -219803016 - AluJo SINE Alu -13 299 1 265 185 174 0 chr3 7721576 7721668 -219802910 - MER113 DNA MER1_type? -410 111 4 257 347 41 0 chr3 7721671 7721792 -219802786 - MIR3 SINE MIR -52 156 31 2255 91 3 3 chr3 7722299 7722586 -219801992 - AluSp SINE Alu -15 298 12 201 261 54 43 chr3 7724911 7725003 -219799575 + MIR SINE MIR 103 195 -67 1837 150 0 43 chr3 7726435 7726761 -219797817 - AluJb SINE Alu 0 312 1 1840 147 14 7 chr3 7727386 7727672 -219796906 + AluJo SINE Alu 1 288 -24 11323 113 19 10 chr3 7827864 7830647 -219693931 + L1PA7 LINE L1 54 2871 -3590 * 16093 95 33 7 chr3 7830643 7833624 -219690954 + L1PA7 LINE L1 3162 6223 -246 1093 214 173 55 chr3 7834314 7834613 -219689965 - MER77 LTR ERV1 -4 601 339 1493 201 116 14 chr3 7834613 7835035 -219689543 - MLT1C LTR MaLR 0 467 3 1093 214 173 55 chr3 7835035 7835244 -219689334 - MER77 LTR ERV1 -266 339 55 1359 193 12 105 chr3 7836198 7836597 -219687981 - MLT1A1 LTR MaLR -3 362 1 499 138 0 12 chr3 7836942 7837022 -219687556 + AluSq SINE Alu 142 220 -93 598 110 28 9 chr3 7837060 7837169 -219687409 + A-rich Low_complexity Low_complexity 4 114 0 492 314 0 0 chr3 7837177 7837298 -219687280 + L2 LINE L2 3150 3270 -2 527 146 21 0 chr3 7837340 7837436 -219687142 + L1MD3 LINE L1 7889 7986 -9 317 271 153 0 chr3 7838434 7838552 -219686026 - MIR SINE MIR -70 192 57 313 269 10 0 chr3 7838986 7839090 -219685488 + L1MD1 LINE L1 6128 6232 -10 183 290 65 0 chr3 7839146 7839208 -219685370 - MIR SINE MIR -78 184 119 586 199 61 15 chr3 7839222 7839353 -219685225 + MIR SINE MIR 12 148 -114 279 284 45 11 chr3 7839426 7839514 -219685064 - MIR SINE MIR -170 92 2 460 220 83 0 chr3 7839623 7839732 -219684846 - MLT1C LTR MaLR 0 467 350 1991 142 9 19 chr3 7839732 7840048 -219684530 + AluSq SINE Alu 1 313 0 388 296 79 4 chr3 7840201 7840649 -219683929 - L1ME4a LINE L1 -32 6089 5572 196 277 0 0 chr3 7840727 7840774 -219683804 - L2 LINE L2 0 3313 3267 590 237 194 0 chr3 7841142 7841328 -219683250 + MIR SINE MIR 11 232 -30 411 281 72 72 chr3 7842632 7842853 -219681725 + MIR SINE MIR 8 228 -34 452 232 18 89 chr3 7843035 7843185 -219681393 - MIR SINE MIR -62 146 22 1980 114 10 7 chr3 7843185 7843475 -219681103 - AluSp SINE Alu -22 291 1 452 232 18 89 chr3 7843475 7843496 -219681082 - MIR SINE MIR -186 22 1 1998 186 3 6 chr3 7844311 7844677 -219679901 - MLT1A1 LTR MaLR 0 365 1 2034 141 0 0 chr3 7844761 7845052 -219679526 - AluSx SINE Alu -19 293 3 802 232 44 6 chr3 7845058 7845239 -219679339 + MER5A DNA MER1_type 2 189 0 325 188 128 77 chr3 7845676 7845793 -219678785 + MIR3 SINE MIR 32 154 -54 2044 113 33 7 chr3 7846899 7847201 -219677377 + AluSg SINE Alu 1 310 0 266 114 0 125 chr3 7847517 7847605 -219676973 + MER113 DNA MER1_type? 59 135 -386 364 325 26 26 chr3 7847885 7848079 -219676499 + MLT1J2 LTR MaLR 247 440 -10 1546 156 9 98 chr3 7848096 7848423 -219676155 + AluJo SINE Alu 5 302 -10 294 320 68 0 chr3 7849256 7849359 -219675219 + L2 LINE L2 3197 3306 -7 542 319 29 10 chr3 7850226 7850433 -219674145 + MIR SINE MIR 7 217 -45 966 194 63 93 chr3 7850439 7850707 -219673871 + AluSg SINE Alu 5 264 -46 542 133 48 0 chr3 7851545 7851650 -219672928 + L1 LINE L1 4727 4836 -1310 181 338 0 14 chr3 7852462 7852533 -219672045 + L2 LINE L2 2847 2916 -397 196 263 0 75 chr3 7852998 7853078 -219671500 + L2 LINE L2 2922 2995 -277 1506 211 42 70 chr3 7853096 7853637 -219670941 + L1M4 LINE L1 14 539 -6003 401 258 39 39 chr3 7853796 7853978 -219670600 - L1ME3A LINE L1 -10 6160 5979 500 287 43 38 chr3 7854001 7854210 -219670368 - L1ME3A LINE L1 -291 5879 5667 1356 205 72 5 chr3 7854229 7854260 -219670318 - MLT2D LTR ERVL -7 457 430 237 33 0 0 chr3 7854260 7854290 -219670288 + (TG)n Simple_repeat Simple_repeat 2 31 0 1356 205 72 5 chr3 7854290 7854627 -219669951 - MLT2D LTR ERVL -34 430 1 1587 191 125 33 chr3 7854740 7854796 -219669782 - MER74A LTR ERVL -30 528 479 2052 125 0 7 chr3 7854796 7855092 -219669486 + AluSx SINE Alu 1 294 -18 1587 191 125 33 chr3 7855092 7855484 -219669094 - MER74A LTR ERVL -79 479 39 1685 133 85 14 chr3 7855484 7855838 -219668740 + L1PA11 LINE L1 5793 6171 -3 180 243 184 29 chr3 7856977 7857080 -219667498 - MIR SINE MIR -73 135 17 1366 230 21 7 chr3 7857196 7857483 -219667095 + AluJo SINE Alu 1 291 -21 420 257 10 20 chr3 7857504 7857605 -219666973 + L2 LINE L2 3195 3294 -19 440 235 98 20 chr3 7857616 7857697 -219666881 - MIR SINE MIR -13 249 176 1410 190 67 32 chr3 7857697 7858071 -219666507 + MLT1B LTR MaLR 4 390 0 440 235 98 20 chr3 7858071 7858142 -219666436 - MIR SINE MIR -86 176 85 1583 121 21 31 chr3 7858241 7858531 -219666047 + L1PA15-16 LINE L1 2641 2927 -3922 933 116 0 34 chr3 7858531 7858678 -219665900 + AluSq SINE Alu 107 248 -65 3489 200 48 14 chr3 7858779 7859608 -219664970 - L1P LINE L1 -5275 871 15 3352 196 2 32 chr3 7859608 7860449 -219664129 + L1P LINE L1 952 1767 -4379 463 293 131 57 chr3 7861625 7862151 -219662427 + L1M4 LINE L1 2944 3515 -2631 344 351 68 11 chr3 7862179 7862370 -219662208 + L1M4 LINE L1 3637 3838 -2308 329 235 12 0 chr3 7862443 7862524 -219662054 - MER46C DNA MER2_type -1 337 256 17227 85 17 10 chr3 7863450 7865529 -219659049 + L1P LINE L1 1586 3689 -2457 204 40 0 0 chr3 7865529 7865554 -219659024 + (TAA)n Simple_repeat Simple_repeat 3 27 0 17227 85 17 10 chr3 7865554 7866097 -219658481 + L1P LINE L1 3689 4227 -1919 698 126 19 101 chr3 7866208 7866367 -219658211 - MLT1C LTR MaLR -315 152 7 314 312 176 16 chr3 7867496 7867621 -219656957 + MIR SINE MIR 2 146 -116 2166 132 3 0 chr3 7867627 7867931 -219656647 + AluSg SINE Alu 1 305 -5 659 256 20 20 chr3 7867934 7868129 -219656449 - MLT1F1 LTR MaLR -370 197 3 2208 75 20 3 chr3 7868935 7869240 -219655338 + AluY SINE Alu 1 310 -1 231 341 71 24 chr3 7869249 7869375 -219655203 + MIR SINE MIR 83 214 -48 467 175 0 0 chr3 7869546 7869626 -219654952 + MER5A DNA MER1_type 30 109 -80 227 228 248 20 chr3 7869552 7869653 -219654925 - MER5A DNA MER1_type -24 165 42 * 266 272 26 35 chr3 7870011 7870125 -219654453 + MER5A DNA MER1_type 7 119 -70 354 294 85 47 chr3 7870685 7870896 -219653682 - MLT1K LTR MaLR -346 242 24 1006 248 17 0 chr3 7870915 7871149 -219653429 - MER8 DNA MER2_type -1 238 1 923 261 79 32 chr3 7872289 7872736 -219651842 + L1MC/D LINE L1 4861 5363 -965 1965 102 6 58 chr3 7872736 7873049 -219651529 - AluSc SINE Alu -12 297 1 923 261 79 32 chr3 7873049 7873270 -219651308 + L1MC/D LINE L1 5363 5572 -756 393 115 37 0 chr3 7873265 7873343 -219651235 + L1MD3 LINE L1 6244 7984 -11 * 205 302 137 29 chr3 7873706 7873845 -219650733 - L3 LINE CR1 -441 1136 983 3454 219 58 41 chr3 7875269 7875394 -219649184 - L1M4c LINE L1 -4666 1980 1859 2080 137 0 0 chr3 7875394 7875678 -219648900 + AluSg SINE Alu 1 284 -26 3454 219 58 41 chr3 7875678 7875877 -219648701 - L1M4c LINE L1 -4787 1859 1665 517 198 0 24 chr3 7875877 7876003 -219648575 - L1PA7 LINE L1 0 6154 6032 3454 219 58 41 chr3 7876003 7877042 -219647536 - L1M4c LINE L1 -4981 1665 644 3846 63 8 0 chr3 7877185 7877677 -219646901 + L1PA6 LINE L1 5656 6151 -3 2244 214 24 75 chr3 7877702 7878010 -219646568 + L1MA10 LINE L1 5653 5975 -359 1965 164 0 7 chr3 7878010 7878315 -219646263 + AluSx SINE Alu 2 304 -8 2244 214 24 75 chr3 7878315 7878721 -219645857 + L1MA10 LINE L1 5975 6330 -4 201 39 0 0 chr3 7879867 7879893 -219644685 + (A)n Simple_repeat Simple_repeat 1 26 0 7203 103 15 15 chr3 7880689 7880755 -219643823 + L1P LINE L1 1771 1836 -4310 2060 150 0 0 chr3 7880755 7881048 -219643530 - AluSg SINE Alu -17 293 1 7203 103 15 15 chr3 7881048 7882042 -219642536 + L1P LINE L1 1835 2831 -3315 180 360 84 56 chr3 7882490 7882776 -219641802 - L2 LINE L2 -17 3255 2962 318 236 0 38 chr3 7883333 7883439 -219641139 - MER117 DNA MER1_type -26 171 70 342 270 102 15 chr3 7883730 7883867 -219640711 + MIR SINE MIR 1 149 -113 214 298 43 0 chr3 7883936 7883983 -219640595 - L2 LINE L2 -86 3186 3138 1684 149 79 6 chr3 7885925 7886240 -219638338 + L1MB8 LINE L1 5839 6176 -2 1858 91 6 91 chr3 7886581 7886911 -219637667 + AluSc SINE Alu 1 302 -7 700 209 76 6 chr3 7886945 7887103 -219637475 + MER3 DNA MER1_type 41 209 0 550 245 66 7 chr3 7887111 7887262 -219637316 + MIR SINE MIR 67 226 -36 199 369 56 20 chr3 7887294 7887489 -219637089 + L2 LINE L2 2546 2747 -567 950 233 25 82 chr3 7887493 7887811 -219636767 + AluJb SINE Alu 1 300 -2 207 269 0 15 chr3 7888720 7888787 -219635791 + CT-rich Low_complexity Low_complexity 3 68 0 403 272 29 0 chr3 7889180 7889283 -219635295 + L2 LINE L2 3153 3258 -14 1538 112 5 0 chr3 7891434 7891640 -219632938 - AluSg/x SINE Alu -38 272 66 293 303 13 0 chr3 7891801 7891877 -219632701 + L2 LINE L2 3192 3268 -4 239 319 96 0 chr3 7891978 7892072 -219632506 - L3 LINE CR1 -393 1184 1082 231 227 252 34 chr3 7893504 7893623 -219630955 + MER5A DNA MER1_type 30 185 -4 578 223 141 0 chr3 7893639 7893799 -219630779 - MER5A DNA MER1_type 0 189 4 238 207 132 0 chr3 7894049 7894170 -219630408 + AluSg SINE Alu 2 138 -162 520 201 60 148 chr3 7896340 7896658 -219627920 + MER102a DNA MER1_type 41 330 0 310 380 0 0 chr3 7898220 7898357 -219626221 + LTR16A1 LTR ERVL 3 139 -318 3951 200 65 14 chr3 7898907 7900110 -219624468 - L1M4 LINE L1 -641 5533 4275 7128 76 2 7 chr3 7900250 7901634 -219622944 + L1PA6 LINE L1 4777 6153 -1 291 308 88 31 chr3 7902099 7902258 -219622320 - MIR SINE MIR -48 214 47 745 211 13 7 chr3 7902368 7902520 -219622058 + MER58B DNA MER1_type 185 337 -4 1978 140 3 22 chr3 7902754 7903068 -219621510 + AluSx SINE Alu 1 308 -4 313 305 85 28 chr3 7904137 7904314 -219620264 + MER5A DNA MER1_type 1 187 -2 196 265 44 44 chr3 7905056 7905124 -219619454 - L2 LINE L2 -4 3268 3201 244 303 25 42 chr3 7905729 7905848 -219618730 - MIR3 SINE MIR -3 205 89 284 340 14 0 chr3 7905858 7905999 -219618579 + MER117 DNA MER1_type 18 160 -37 346 381 0 8 chr3 7906123 7906249 -219618329 - MIR SINE MIR -133 129 5 579 96 12 0 chr3 7907227 7907310 -219617268 + MSTB1 LTR MaLR 349 432 0 230 239 0 0 chr3 7907855 7907901 -219616677 + L2 LINE L2 2706 2751 -563 576 322 57 13 chr3 7907910 7908140 -219616438 - L2 LINE L2 -352 2962 2723 6542 75 7 2 chr3 7908375 7909199 -219615379 + L1PA7 LINE L1 5327 6154 0 584 239 8 8 chr3 7909857 7909991 -219614587 + MER20 DNA MER1_type 86 219 0 267 157 20 0 chr3 7910096 7910147 -219614431 - L2 LINE L2 0 3272 3221 1122 189 33 54 chr3 7912407 7912741 -219611837 - MER44D DNA MER2_type -12 597 1 335 227 0 0 chr3 7912742 7912808 -219611770 - MER91B DNA MER1_type -89 101 36 207 350 72 0 chr3 7913261 7913358 -219611220 + L3 LINE CR1 401 504 -1073 271 317 112 0 chr3 7914248 7914409 -219610169 - L2 LINE L2 0 3313 3135 1194 161 9 19 chr3 7914531 7914742 -219609836 + L1MB3 LINE L1 5975 6183 0 247 273 45 23 chr3 7915395 7915527 -219609051 + MER4A LTR ERV1 116 250 -414 22 0 0 0 chr3 7915621 7915643 -219608935 + AT_rich Low_complexity Low_complexity 1 22 0 423 171 225 39 chr3 7915722 7915851 -219608727 + MER4C LTR ERV1 294 446 -19 594 289 138 23 chr3 7915875 7916179 -219608399 - L2 LINE L2 -47 3266 2928 183 200 40 107 chr3 7916427 7916502 -219608076 - L3 LINE CR1 -832 745 676 317 216 75 30 chr3 7916957 7917091 -219607487 + LTR16C LTR ERVL 352 491 0 4979 181 49 26 chr3 7918618 7919905 -219604673 + L1MA9 LINE L1 4848 6311 -1 201 74 0 0 chr3 7920086 7920113 -219604465 + (A)n Simple_repeat Simple_repeat 1 27 0 289 247 81 86 chr3 7921783 7921969 -219602609 + L1ME LINE L1 5634 5818 -303 382 288 18 9 chr3 7922216 7922327 -219602251 - MIR SINE MIR -90 172 61 190 348 158 19 chr3 7922367 7922525 -219602053 + MIR3 SINE MIR 16 195 -13 221 398 0 0 chr3 7923223 7923311 -219601267 - MIR SINE MIR -55 153 66 217 334 88 0 chr3 7923986 7924122 -219600456 - MIR SINE MIR -63 145 45 381 253 22 0 chr3 7924185 7924276 -219600302 - MER5A DNA MER1_type -88 101 9 457 308 14 20 chr3 7925057 7925203 -219599375 + MIR3 SINE MIR 40 184 -24 342 270 41 0 chr3 7926060 7926186 -219598392 + MLT1J2 LTR MaLR 65 233 -278 320 275 102 23 chr3 7926864 7927070 -219597508 + MIR SINE MIR 9 225 -37 260 253 48 48 chr3 7927139 7927222 -219597356 + L2 LINE L2 3231 3313 0 843 271 76 15 chr3 7927313 7927739 -219596839 - MARNA DNA Mariner -33 553 70 328 264 174 0 chr3 7928277 7928398 -219596180 - MIR SINE MIR -62 200 59 653 345 47 14 chr3 7931081 7931377 -219593201 + L2 LINE L2 2654 2959 -355 1918 139 34 28 chr3 7932072 7932424 -219592154 - MSTB1 LTR MaLR 0 432 79 364 293 91 54 chr3 7932730 7932972 -219591606 + L1ME4a LINE L1 5778 6028 -93 1525 181 0 40 chr3 7933038 7933315 -219591263 - AluJo SINE Alu -17 295 30 1202 94 0 50 chr3 7934277 7934457 -219590121 + AluSq SINE Alu 143 313 0 388 296 79 4 chr3 7934607 7935055 -219589523 - L1ME4a LINE L1 -32 6089 5572 196 277 0 0 chr3 7935133 7935180 -219589398 - L2 LINE L2 0 3313 3267 590 237 194 0 chr3 7935548 7935734 -219588844 + MIR SINE MIR 11 232 -30 485 278 17 56 chr3 7936371 7936551 -219588027 - MER5B DNA MER1_type -2 176 4 350 258 0 22 chr3 7936551 7936638 -219587940 - MER5B DNA MER1_type -93 85 1 794 187 66 28 chr3 7937288 7937470 -219587108 - MER5A DNA MER1_type 0 189 1 972 245 44 24 chr3 7938303 7938601 -219585977 + LTR40b LTR ERVL 1 304 -158 2081 123 20 0 chr3 7938614 7938914 -219585664 + AluSx SINE Alu 1 306 -6 339 159 16 0 chr3 7938917 7938980 -219585598 + LTR40b LTR ERVL 394 457 -5 261 281 148 39 chr3 7939122 7939250 -219585328 + L2 LINE L2 3171 3312 -1 872 274 109 35 chr3 7939277 7939682 -219584896 - LTR16A LTR ERVL 0 450 16 2000 186 3 6 chr3 7939748 7940114 -219584464 - MLT1A1 LTR MaLR 0 365 1 2002 139 0 0 chr3 7940198 7940479 -219584099 - AluSx SINE Alu -19 293 13 3732 155 22 24 chr3 7940619 7941342 -219583236 + L1MA10 LINE L1 5602 6323 -11 410 353 73 71 chr3 7941419 7941805 -219582773 + L2 LINE L2 2838 3227 -45 1335 226 57 28 chr3 7941805 7942229 -219582349 - MER63B DNA MER1_type 0 436 1 410 353 73 71 chr3 7942229 7942267 -219582311 + L2 LINE L2 3227 3263 -9 2180 126 10 0 chr3 7943167 7943476 -219581102 - AluSx SINE Alu 0 312 1 21 0 0 0 chr3 7943626 7943647 -219580931 + AT_rich Low_complexity Low_complexity 1 21 0 217 222 111 0 chr3 7943893 7943938 -219580640 - L2 LINE L2 -3 3269 3220 470 298 80 48 chr3 7944168 7944480 -219580098 - MLT1K LTR MaLR -126 462 141 186 344 16 0 chr3 7944587 7944651 -219579927 - L2 LINE L2 -237 3035 2971 475 280 126 6 chr3 7946909 7947084 -219577494 + L2 LINE L2 3112 3307 -6 241 347 74 34 chr3 7947110 7947286 -219577292 - MIR SINE MIR -20 242 60 455 337 63 0 chr3 7947489 7947664 -219576914 - MIR SINE MIR -41 221 36 467 360 35 19 chr3 7947742 7948003 -219576575 + L3 LINE CR1 967 1231 -346 683 298 37 16 chr3 7948098 7948343 -219576235 + MIR SINE MIR 13 262 0 190 292 188 21 chr3 7948543 7948639 -219575939 - MIR SINE MIR -67 141 30 990 316 104 23 chr3 7948826 7949549 -219575029 + L2 LINE L2 2499 3308 -5 2380 88 0 28 chr3 7950352 7950670 -219573908 + AluY SINE Alu 1 309 -2 22 56 0 0 chr3 7950935 7950971 -219573607 + AT_rich Low_complexity Low_complexity 1 36 0 23 0 0 0 chr3 7950981 7951004 -219573574 + AT_rich Low_complexity Low_complexity 1 23 0 270 231 0 0 chr3 7951822 7951887 -219572691 + (TA)n Simple_repeat Simple_repeat 1 65 0 190 355 0 0 chr3 7951887 7951949 -219572629 + L2 LINE L2 2920 2981 -291 329 223 117 21 chr3 7951996 7952090 -219572488 + MER5A DNA MER1_type 31 133 -56 258 213 0 0 chr3 7952443 7952490 -219572088 + L2 LINE L2 3257 3303 -10 2177 146 8 11 chr3 7952594 7952956 -219571622 + MLT1A1 LTR MaLR 5 365 0 398 286 0 0 chr3 7953020 7953118 -219571460 + L2 LINE L2 3173 3270 -2 323 283 43 11 chr3 7953664 7953756 -219570822 + MIR SINE MIR 118 212 -50 24 0 0 0 chr3 7955291 7955315 -219569263 + AT_rich Low_complexity Low_complexity 1 24 0 266 244 26 0 chr3 7955445 7955523 -219569055 + (TATATG)n Simple_repeat Simple_repeat 3 82 0 777 211 93 45 chr3 7956026 7956272 -219568306 + MIR SINE MIR 5 262 0 823 195 23 45 chr3 7957662 7957883 -219566695 + MER20 DNA MER1_type 2 217 -2 249 258 305 0 chr3 7958696 7958824 -219565754 - MIR SINE MIR -45 217 51 2582 238 30 20 chr3 7959020 7959664 -219564914 + MER82 DNA MER2_type 1 650 -3 687 178 103 23 chr3 7960067 7960241 -219564337 + MER5A DNA MER1_type 2 189 0 3882 168 14 3 chr3 7960773 7961469 -219563109 + MER50 LTR ERV1 7 710 -24 210 294 147 29 chr3 7961477 7961579 -219562999 - L2 LINE L2 -40 3273 3160 283 319 120 15 chr3 7962961 7963209 -219561369 - L3 LINE CR1 -15 1562 1238 2059 131 0 7 chr3 7963569 7963866 -219560712 - AluSx SINE Alu -17 295 1 991 204 125 14 chr3 7964222 7964501 -219560077 - LTR2 LTR ERV1 0 449 140 244 298 145 8 chr3 7964532 7964663 -219559915 - LTR2 LTR ERV1 -298 151 3 387 309 19 47 chr3 7964702 7964958 -219559620 - L2 LINE L2 -1037 2277 2029 280 258 34 34 chr3 7965049 7965138 -219559440 - L2 LINE L2 -1359 1955 1867 304 330 73 31 chr3 7965615 7965653 -219558925 + MIR SINE MIR 48 83 -179 2178 154 43 25 chr3 7965653 7966095 -219558483 - LTR7 LTR ERV1 0 450 1 304 330 73 31 chr3 7966095 7966247 -219558331 + MIR SINE MIR 83 246 -16 4952 214 18 33 chr3 7966971 7968998 -219555580 + L1PA8A LINE L1 3 2163 -4298 940 117 0 6 chr3 7969003 7969166 -219555412 + L1PA8A LINE L1 3634 3795 -2666 12574 110 5 7 chr3 7969213 7970012 -219554566 + L1PA8A LINE L1 3756 4555 -1891 2034 143 26 10 chr3 7970012 7970319 -219554259 + AluSx SINE Alu 1 312 0 12574 110 5 7 chr3 7970319 7972200 -219552378 + L1PA8A LINE L1 4555 6445 -1 1415 183 54 0 chr3 7972214 7972509 -219552069 + L1M2 LINE L1 5476 5786 -526 8343 54 7 0 chr3 7972694 7974526 -219550052 - L1PA5 LINE L1 -3 6151 4304 5958 90 2 15 chr3 7974791 7975677 -219548901 + L1PA10 LINE L1 5291 6165 -3 1494 174 14 88 chr3 7975761 7976185 -219548393 + MLT2D LTR ERVL 5 377 -20 256 259 0 0 chr3 7976192 7976250 -219548328 + (TATATG)n Simple_repeat Simple_repeat 6 63 0 258 100 50 0 chr3 7976254 7976294 -219548284 + MLT2D LTR ERVL 367 408 -6 649 278 40 48 chr3 7976299 7976547 -219548031 - MIR SINE MIR -10 252 7 290 146 0 18 chr3 7977123 7977178 -219547400 - L1ME LINE L1 -476 5645 5592 381 238 42 35 chr3 7977295 7977554 -219547024 + MLT1I LTR MaLR 95 399 -10 956 287 89 0 chr3 7977789 7978204 -219546374 - L1MC4a LINE L1 -1862 5946 5495 508 272 101 68 chr3 7978221 7978698 -219545880 - L1MC4a LINE L1 -1684 4462 3947 8036 214 17 7 chr3 7979079 7981031 -219543547 - L1P LINE L1 -1361 4785 2814 7444 32 16 1 chr3 7981042 7984421 -219540157 - L1PA4 LINE L1 -6 6149 2719 2536 37 0 0 chr3 7984419 7984741 -219539837 - L1P LINE L1 -1001 5145 4824 * 7811 102 29 6 chr3 7984745 7986728 -219537850 - L1PA7 LINE L1 -3 6466 4451 10397 98 7 0 chr3 7986731 7988226 -219536352 - L1PA7 LINE L1 -4812 1649 145 3342 203 20 12 chr3 7988224 7988972 -219535606 - L1PA13 LINE L1 -4803 1984 1231 * 227 321 9 0 chr3 7989010 7989119 -219535459 - L1PA12 LINE L1 -5279 2302 2193 227 335 29 61 chr3 7989965 7990210 -219534368 - L1PA12 LINE L1 -7202 379 143 724 286 152 47 chr3 7990241 7990927 -219533651 - L1M4 LINE L1 -3113 3033 2276 2329 104 3 0 chr3 7990928 7991226 -219533352 - AluSx SINE Alu -13 299 1 214 264 28 14 chr3 7991371 7991443 -219533135 + (CTA)n Simple_repeat Simple_repeat 2 74 0 341 366 42 0 chr3 7992935 7993077 -219531501 + MIR SINE MIR 86 233 -29 512 260 0 0 chr3 7993092 7993215 -219531363 + Tigger3(Golem) DNA MER2_type 3 125 -2904 288 103 39 39 chr3 7993212 7993290 -219531288 + Tigger3(Golem) DNA MER2_type 2483 2560 -469 * 711 176 11 102 chr3 7993297 7993484 -219531094 + FRAM SINE Alu 2 171 -5 2784 131 7 13 chr3 7993484 7993935 -219530643 + Tigger3(Golem) DNA MER2_type 2581 3028 -1 27 49 0 0 chr3 7994055 7994096 -219530482 + AT_rich Low_complexity Low_complexity 1 41 0 540 45 0 0 chr3 7994840 7994907 -219529671 + (TA)n Simple_repeat Simple_repeat 2 68 0 696 184 0 17 chr3 7994955 7995180 -219529398 - AluJb SINE Alu -1 311 1 2089 147 81 18 chr3 7995333 7995728 -219528850 - MSTA LTR MaLR -4 424 5 231 294 172 12 chr3 7995841 7996004 -219528574 - MIR SINE MIR -11 251 63 2192 126 3 0 chr3 7996087 7996388 -219528190 + AluSx SINE Alu 1 302 -10 21 36 0 0 chr3 7996648 7996676 -219527902 + AT_rich Low_complexity Low_complexity 1 28 0 568 148 56 0 chr3 7996812 7996920 -219527658 - L1MA9 LINE L1 -4 6308 6195 2050 178 76 4 chr3 7996922 7997394 -219527184 - L1MA8 LINE L1 -5 6286 5781 348 262 0 0 chr3 7997394 7997497 -219527081 + (TA)n Simple_repeat Simple_repeat 2 104 0 226 211 0 0 chr3 7997498 7997550 -219527028 - L1MC4 LINE L1 -1339 6703 6652 286 342 0 0 chr3 7997550 7997629 -219526949 + (CATA)n Simple_repeat Simple_repeat 2 80 0 359 315 0 11 chr3 7997634 7997815 -219526763 + (CATATA)n Simple_repeat Simple_repeat 2 180 0 591 293 0 0 chr3 7997831 7998159 -219526419 + (TA)n Simple_repeat Simple_repeat 1 328 0 183 366 0 0 chr3 7998185 7998360 -219526218 + (CATATA)n Simple_repeat Simple_repeat 2 176 0 * 279 161 0 0 chr3 7998333 7998389 -219526189 + (CA)n Simple_repeat Simple_repeat 2 57 0 556 159 90 141 chr3 7998391 7998647 -219525931 - L1MA8 LINE L1 -513 5778 5543 10191 225 59 66 chr3 7998789 8003127 -219521451 - L1M2 LINE L1 -602 6710 2343 2343 164 50 7 chr3 8003127 8003565 -219521013 - MSTB2 LTR MaLR 0 457 1 960 203 31 22 chr3 8003565 8003792 -219520786 - MER46A DNA MER2_type -7 229 1 10191 225 59 66 chr3 8003792 8005100 -219519478 - L1M2 LINE L1 -4967 2345 1193 266 269 92 43 chr3 8005648 8005789 -219518789 - L2 LINE L2 -1 3312 3165 257 233 79 55 chr3 8006239 8006441 -219518137 - LTR33 LTR ERVL -16 505 299 292 303 42 7 chr3 8006552 8006694 -219517884 - LTR33 LTR ERVL -366 155 9 593 129 0 0 chr3 8006869 8006954 -219517624 - FLAM SINE Alu -19 124 40 259 225 0 38 chr3 8007060 8007140 -219517438 + (TATATG)n Simple_repeat Simple_repeat 2 78 0 801 258 45 1 chr3 8009477 8009684 -219514894 - MIR SINE MIR -47 215 3 848 181 117 0 chr3 8010160 8010348 -219514230 - MER20 DNA MER1_type -2 217 8 264 200 0 0 chr3 8010671 8010756 -219513822 + CT-rich Low_complexity Low_complexity 1 85 0 3902 118 3 0 chr3 8011504 8012091 -219512487 + L1PA13 LINE L1 5562 6150 -13 1320 170 64 70 chr3 8012237 8012596 -219511982 + MLT1A1 LTR MaLR 1 357 -8 484 321 51 10 chr3 8012613 8012906 -219511672 + MLT1K LTR MaLR 262 566 -22 493 262 41 21 chr3 8013040 8013185 -219511393 + MIR SINE MIR 41 188 -74 340 293 118 7 chr3 8013366 8013537 -219511041 - MIR SINE MIR -62 146 1 187 246 35 35 chr3 8015502 8015559 -219509019 + MIR SINE MIR 96 152 -56 364 291 87 76 chr3 8015848 8016205 -219508373 - MLT1K LTR MaLR -87 501 141 192 40 0 0 chr3 8017435 8017460 -219507118 + (TTTG)n Simple_repeat Simple_repeat 4 28 0 775 155 9 0 chr3 8017461 8017577 -219507001 - AluJb SINE Alu -193 119 3 782 226 59 44 chr3 8017691 8017895 -219506683 + MER63A DNA MER1_type 4 210 0 896 233 77 85 chr3 8018065 8018627 -219505951 - L1ME3A LINE L1 -5 6165 5609 297 244 111 84 chr3 8019226 8019451 -219505127 - L2 LINE L2 -218 3054 2824 934 187 16 5 chr3 8019929 8020116 -219504462 - MER5A DNA MER1_type 0 189 1 838 255 25 103 chr3 8020383 8020779 -219503799 + MLT1A1 LTR MaLR 1 365 0 565 231 28 66 chr3 8021314 8021354 -219503224 + MER5B DNA MER1_type 1 41 -137 2205 133 0 0 chr3 8021354 8021663 -219502915 + AluSg SINE Alu 1 309 -1 565 231 28 66 chr3 8021663 8021804 -219502774 + MER5B DNA MER1_type 41 175 -3 984 180 16 0 chr3 8021813 8021996 -219502582 + MER5A DNA MER1_type 1 186 -3 374 357 16 11 chr3 8022010 8022195 -219502383 - MER5A DNA MER1_type -3 186 1 257 338 101 36 chr3 8022231 8022370 -219502208 - MER5B DNA MER1_type -16 162 15 477 273 45 45 chr3 8023026 8023180 -219501398 - MIR3 SINE MIR -39 169 16 2113 236 50 12 chr3 8024117 8024635 -219499943 + MLT1F LTR MaLR 5 542 0 327 289 0 0 chr3 8024645 8024735 -219499843 + L2 LINE L2 3224 3313 0 740 267 61 17 chr3 8025026 8025468 -219499110 - LTR33 LTR ERVL -25 496 3 414 138 0 0 chr3 8025750 8025815 -219498763 + AluSc SINE Alu 236 300 -9 1293 165 117 26 chr3 8025819 8026128 -219498450 - THE1C LTR MaLR -38 337 1 538 320 46 25 chr3 8026287 8026484 -219498094 - L3 LINE CR1 -8 1569 1369 968 226 22 2 chr3 8026508 8026781 -219497797 - L1ME1 LINE L1 -177 5989 5712 271 246 67 15 chr3 8027220 8027354 -219497224 - L1MEd LINE L1 -5973 146 6 181 284 40 27 chr3 8028617 8028691 -219495887 - MIR3 SINE MIR -47 161 87 222 255 0 0 chr3 8028835 8028886 -219495692 - MIR SINE MIR -108 154 104 495 264 9 88 chr3 8028991 8029207 -219495371 - MIR SINE MIR -44 218 20 2432 198 49 12 chr3 8029220 8029811 -219494767 - MER90 LTR ERV1 -1 613 1 249 311 106 12 chr3 8029836 8029997 -219494581 - L2 LINE L2 -618 2696 2521 379 283 122 24 chr3 8031846 8032051 -219492527 - LTR16A LTR ERVL -6 444 220 848 237 45 0 chr3 8032507 8032705 -219491873 - MIR SINE MIR -40 222 16 685 278 34 1 chr3 8032733 8032961 -219491617 - MIR SINE MIR -13 249 16 854 136 220 5 chr3 8034462 8034653 -219489925 + MER46A DNA MER2_type 1 232 -4 1911 178 3 45 chr3 8034669 8034808 -219489770 + MLT1A1 LTR MaLR 3 146 -219 2149 26 56 4 chr3 8034808 8035112 -219489466 - AluY SINE Alu 0 318 1 1911 178 3 45 chr3 8035112 8035348 -219489230 + MLT1A1 LTR MaLR 146 363 -2 1826 177 20 3 chr3 8035830 8036135 -219488443 - AluSx SINE Alu -2 310 1 346 157 14 0 chr3 8036357 8036427 -219488151 + MLT2B3 LTR ERVL 1 71 -483 1587 189 129 55 chr3 8036520 8036971 -219487607 + MLT2B3 LTR ERVL 71 554 0 521 296 119 51 chr3 8037228 8037776 -219486802 - MLT1K LTR MaLR 0 588 4 720 284 92 42 chr3 8037990 8038447 -219486131 + LTR33 LTR ERVL 34 513 -8 246 295 52 75 chr3 8039273 8039446 -219485132 + MIR SINE MIR 14 182 -80 1162 204 8 17 chr3 8039561 8039796 -219484782 + MER8 DNA MER2_type 7 239 0 341 202 18 53 chr3 8040199 8040313 -219484265 - MER103 DNA DNA -49 117 8 484 243 110 12 chr3 8040679 8040852 -219483726 - MIR SINE MIR -1 261 72 993 258 57 6 chr3 8040864 8041178 -219483400 + MER58B DNA MER1_type 12 341 0 204 322 56 94 chr3 8042290 8042632 -219481946 - L2 LINE L2 -4 3268 2940 189 258 30 45 chr3 8042938 8043004 -219481574 + MIR SINE MIR 87 151 -57 10906 41 7 0 chr3 8043005 8045109 -219479469 + L1PA5 LINE L1 4027 6147 -7 512 208 16 0 chr3 8045111 8045236 -219479342 + (TATG)n Simple_repeat Simple_repeat 2 128 0 206 245 19 0 chr3 8045352 8045405 -219479173 + L2 LINE L2 3217 3270 -2 539 262 104 0 chr3 8046543 8046707 -219477871 + MIR SINE MIR 44 224 -38 616 241 6 6 chr3 8047899 8048057 -219476521 + MER20 DNA MER1_type 33 190 -29 40651 51 4 3 chr3 8048109 8054255 -219470323 - L1PA5 LINE L1 0 6154 7 756 98 91 0 chr3 8054255 8054387 -219470191 - L1P5 LINE L1 -543 5608 5465 873 133 0 67 chr3 8054387 8054567 -219470011 - MLT1B LTR MaLR -222 168 1 187 342 45 0 chr3 8054821 8054932 -219469646 + MIR SINE MIR 92 207 -55 2321 112 3 0 chr3 8055519 8055824 -219468754 + AluSq SINE Alu 1 306 -7 383 244 133 22 chr3 8056781 8056865 -219467713 - MIR SINE MIR -15 247 149 513 274 71 18 chr3 8056865 8057033 -219467545 - MER5B DNA MER1_type -1 177 1 15142 215 24 6 chr3 8058016 8063369 -219461209 + L1PA15 LINE L1 1357 6816 0 338 159 23 102 chr3 8063715 8063803 -219460775 - MIR3 SINE MIR -14 194 114 301 294 12 0 chr3 8064338 8064423 -219460155 + MIR SINE MIR 68 153 -109 527 374 29 3 chr3 8064772 8065112 -219459466 + L1MEc LINE L1 35 383 -6013 638 259 77 66 chr3 8065144 8065843 -219458735 + L1MEc LINE L1 942 1648 -4748 * 2659 247 84 15 chr3 8065833 8066341 -219458237 + L1MEc LINE L1 2244 2716 -3499 2470 99 42 11 chr3 8066341 8066694 -219457884 - THE1B LTR MaLR 0 364 1 2659 247 84 15 chr3 8066694 8067425 -219457153 + L1MEc LINE L1 2716 3568 -2647 590 125 38 109 chr3 8067435 8067570 -219457008 + L1MD3 LINE L1 7729 7849 -146 2421 97 0 0 chr3 8067570 8067878 -219456700 - AluY SINE Alu -3 308 1 590 125 38 109 chr3 8067878 8067926 -219456652 + L1MD3 LINE L1 7849 7899 -96 754 278 28 5 chr3 8067926 8068138 -219456440 + MER20 DNA MER1_type 1 217 -2 321 125 16 0 chr3 8068175 8068239 -219456339 + L1MD3 LINE L1 7931 7995 0 * 423 268 63 0 chr3 8068233 8068375 -219456203 + L1MEc LINE L1 3563 3713 -2502 241 65 87 0 chr3 8069424 8069470 -219455108 + CT-rich Low_complexity Low_complexity 1 50 0 1619 192 4 0 chr3 8069470 8069746 -219454832 - AluJb SINE Alu -1 311 35 665 247 26 115 chr3 8070696 8071044 -219453534 + MLT1A1 LTR MaLR 5 321 -44 481 236 214 25 chr3 8071103 8071379 -219453199 + MER41B LTR ERV1 100 297 -189 477 254 70 22 chr3 8071465 8071650 -219452928 + MER66A LTR ERV1 285 478 0 376 235 15 30 chr3 8072540 8072672 -219451906 + LTR16A1 LTR ERVL 307 436 -21 1867 146 21 0 chr3 8072821 8073109 -219451469 - AluSq SINE Alu -19 294 1 484 335 60 9 chr3 8073827 8074060 -219450518 - MIR SINE MIR -6 256 12 377 302 71 10 chr3 8074768 8075076 -219449502 + L1ME4a LINE L1 5594 5920 -201 309 261 15 97 chr3 8075093 8075178 -219449400 + L1ME4a LINE L1 5977 6049 -72 1670 149 40 7 chr3 8075178 8075453 -219449125 + AluJb SINE Alu 1 284 -28 309 261 15 97 chr3 8075453 8075501 -219449077 + L1ME4a LINE L1 6049 6099 -22 24 0 0 0 chr3 8075553 8075577 -219449001 + AT_rich Low_complexity Low_complexity 1 24 0 807 201 113 15 chr3 8075613 8075817 -219448761 + MER58A DNA MER1_type 1 224 0 299 237 52 0 chr3 8076139 8076236 -219448342 - HAL1b LINE L1 -502 846 745 573 266 75 90 chr3 8076247 8076623 -219447955 - HAL1b LINE L1 -912 436 67 2363 151 60 2 chr3 8077429 8077832 -219446746 + MSTB LTR MaLR 1 426 0 356 182 55 18 chr3 8078267 8078377 -219446201 - L1MC3 LINE L1 0 7785 7672 1694 218 8 3 chr3 8078385 8078739 -219445839 - MLT1A1 LTR MaLR 0 365 10 2765 217 41 18 chr3 8078748 8079820 -219444758 - L1MC3 LINE L1 -486 7299 6180 1473 183 87 67 chr3 8079827 8080274 -219444304 - MER31B LTR ERV1 -10 456 1 3588 186 25 30 chr3 8080274 8080487 -219444091 - L1MC3 LINE L1 -1611 6174 5962 2149 125 0 3 chr3 8080487 8080782 -219443796 - AluSc SINE Alu -10 299 6 3588 186 25 30 chr3 8080782 8081445 -219443133 - L1MC3 LINE L1 -1823 5962 5302 1197 244 178 11 chr3 8081442 8082070 -219442508 - L1MC3 LINE L1 -1306 4840 4108 * 1753 178 24 3 chr3 8082095 8082427 -219442151 + MLT1A1 LTR MaLR 1 341 -24 1172 214 67 17 chr3 8082442 8082798 -219441780 - L1MC3 LINE L1 -2065 4081 3708 4652 148 35 23 chr3 8082809 8083904 -219440674 - L1MA8 LINE L1 -73 6218 5111 3454 249 51 9 chr3 8083959 8085317 -219439261 - L1MC3 LINE L1 -2466 3680 2266 21 36 0 0 chr3 8085360 8085388 -219439190 + AT_rich Low_complexity Low_complexity 1 28 0 920 287 73 37 chr3 8085573 8085966 -219438612 - L1MC4a LINE L1 -1896 5912 5488 1719 197 7 0 chr3 8085966 8086266 -219438312 + AluJo SINE Alu 1 302 -10 920 287 73 37 chr3 8086266 8086472 -219438106 - L1MC4a LINE L1 -2320 5488 5291 527 327 78 27 chr3 8086496 8086943 -219437635 - L1MC4a LINE L1 -892 5254 4785 28 86 0 0 chr3 8086952 8087022 -219437556 + AT_rich Low_complexity Low_complexity 1 70 0 22 35 0 0 chr3 8089922 8089951 -219434627 + AT_rich Low_complexity Low_complexity 1 29 0 185 263 0 0 chr3 8090228 8090266 -219434312 + MIR SINE MIR 113 150 -58 3059 206 73 16 chr3 8090781 8092418 -219432160 - L1PBa LINE L1 -4875 1988 115 199 350 52 0 chr3 8092462 8092559 -219432019 - MIR3 SINE MIR -9 199 98 370 275 17 40 chr3 8093220 8093396 -219431182 + MIR SINE MIR 50 220 -42 189 147 0 0 chr3 8093642 8093676 -219430902 + (TC)n Simple_repeat Simple_repeat 1 34 0 1699 211 108 0 chr3 8093959 8094357 -219430221 + MER31B LTR ERV1 4 444 -22 1190 192 20 119 chr3 8094375 8094770 -219429808 - MLT1A1 LTR MaLR -2 363 8 2369 192 58 13 chr3 8095987 8096518 -219428060 - MER89 LTR ERV1 0 559 5 750 210 18 32 chr3 8096526 8096745 -219427833 - L1ME1 LINE L1 -19 6147 5932 233 259 56 9 chr3 8096800 8096908 -219427670 - L1MCc LINE L1 -5485 938 826 696 222 70 59 chr3 8097015 8097285 -219427293 - ORSL DNA AcHobo 0 275 3 436 277 18 45 chr3 8097452 8097684 -219426894 - L1MCc LINE L1 -5708 714 258 3286 92 2 38 chr3 8097901 8098371 -219426207 + MLT2A2 LTR ERVL 1 453 0 29 0 0 0 chr3 8099361 8099390 -219425188 + AT_rich Low_complexity Low_complexity 1 29 0 204 167 19 74 chr3 8099443 8099497 -219425081 + L2 LINE L2 3263 3313 0 1015 267 100 10 chr3 8099795 8100185 -219424393 - MER110 LTR ERV1 -22 469 45 231 146 21 0 chr3 8100342 8100390 -219424188 + (CAT)n Simple_repeat Simple_repeat 3 51 0 2061 194 5 3 chr3 8100419 8100811 -219423767 - LTR39 LTR ERV1 0 783 391 1433 185 34 84 chr3 8100924 8101078 -219423500 - LTR39 LTR ERV1 -388 395 235 6166 100 11 5 chr3 8101078 8102243 -219422335 + L1PA10 LINE L1 4982 6152 -16 1433 185 34 84 chr3 8102243 8102504 -219422074 - LTR39 LTR ERV1 -548 235 1 412 275 25 17 chr3 8102508 8102628 -219421950 + MIR SINE MIR 33 153 -55 229 345 78 5 chr3 8102993 8103132 -219421446 + MIR SINE MIR 1 154 -65 360 303 8 41 chr3 8103202 8103324 -219421254 - L2 LINE L2 -7 3306 3189 4655 95 23 0 chr3 8103441 8104093 -219420485 + PABL_B LTR ERV1 1 667 0 338 279 162 0 chr3 8104102 8104238 -219420340 - MIR SINE MIR -16 246 89 21 36 0 0 chr3 8105360 8105388 -219419190 + AT_rich Low_complexity Low_complexity 1 28 0 348 313 71 28 chr3 8105406 8105758 -219418820 + HAL1 LINE L1 1168 1534 -973 25 51 0 0 chr3 8105891 8105930 -219418648 + AT_rich Low_complexity Low_complexity 1 39 0 180 0 0 0 chr3 8106027 8106047 -219418531 + (T)n Simple_repeat Simple_repeat 1 20 0 207 0 0 0 chr3 8106047 8106070 -219418508 + (TG)n Simple_repeat Simple_repeat 2 24 0 180 0 0 0 chr3 8106936 8106956 -219417622 + (T)n Simple_repeat Simple_repeat 1 20 0 207 0 0 0 chr3 8106956 8106979 -219417599 + (TG)n Simple_repeat Simple_repeat 2 24 0 2757 181 42 42 chr3 8107402 8107996 -219416582 + L1MB8 LINE L1 5514 6110 -68 1748 154 68 0 chr3 8107996 8108276 -219416302 - AluSg SINE Alu -11 299 1 2757 181 42 42 chr3 8108276 8108340 -219416238 + L1MB8 LINE L1 6109 6172 -6 25 0 0 0 chr3 8108403 8108428 -219416150 + AT_rich Low_complexity Low_complexity 1 25 0 239 316 0 0 chr3 8108855 8108934 -219415644 + T-rich Low_complexity Low_complexity 1 79 0 1742 219 38 22 chr3 8109515 8109966 -219414612 - MER31A LTR ERV1 -27 458 1 191 262 0 24 chr3 8110284 8110326 -219414252 - L2 LINE L2 -92 3180 3140 288 289 48 64 chr3 8110399 8110586 -219413992 + L2 LINE L2 2650 2833 -481 25 0 0 0 chr3 8112308 8112333 -219412245 + AT_rich Low_complexity Low_complexity 1 25 0 187 273 55 18 chr3 8113599 8113654 -219410924 - MIR SINE MIR -186 76 20 537 207 59 0 chr3 8114016 8114153 -219410425 + MIR SINE MIR 98 242 -20 217 152 22 43 chr3 8114124 8114170 -219410408 + L2 LINE L2 3218 3262 -10 * 354 299 64 141 chr3 8114795 8115142 -219409436 - L2 LINE L2 -12 3260 2959 3260 157 50 10 chr3 8115142 8115722 -219408856 - LTR26 LTR ERV1 0 603 1 354 299 64 141 chr3 8115722 8115856 -219408722 - L2 LINE L2 -313 2959 2816 225 0 0 0 chr3 8116104 8116129 -219408449 + (TA)n Simple_repeat Simple_repeat 2 26 0 1281 199 45 6 chr3 8116364 8116788 -219407790 - MLT1D LTR MaLR 0 505 1 3824 69 54 163 chr3 8116870 8117642 -219406936 - LTR12 LTR ERV1 0 688 1 289 274 228 25 chr3 8117710 8117907 -219406671 + L2 LINE L2 2841 3077 -195 205 125 0 0 chr3 8117961 8117993 -219406585 - L2 LINE L2 0 3313 3282 523 287 140 37 chr3 8117993 8118394 -219406184 - LTR16A LTR ERVL 0 450 9 814 291 88 39 chr3 8118405 8118957 -219405621 - L2 LINE L2 -28 3285 2699 180 0 0 0 chr3 8119307 8119327 -219405251 + (CTTTG)n Simple_repeat Simple_repeat 3 22 0 216 307 45 23 chr3 8119573 8119661 -219404917 - L2 LINE L2 -33 3239 3150 761 177 35 0 chr3 8119665 8119806 -219404772 + MER5A DNA MER1_type 3 148 -41 2120 173 19 35 chr3 8120068 8120313 -219404265 - MSTB LTR MaLR 0 426 189 1830 92 3 76 chr3 8120313 8120629 -219403949 - L1PA10 LINE L1 -9 6159 5867 2120 173 19 35 chr3 8120629 8120812 -219403766 - MSTB LTR MaLR -237 189 5 4256 250 95 32 chr3 8122117 8122576 -219402002 + L1MB7 LINE L1 5 434 -6525 1870 191 89 0 chr3 8122576 8122969 -219401609 - MSTA LTR MaLR 0 428 1 4256 250 95 32 chr3 8122969 8124470 -219400108 + L1MB7 LINE L1 434 2107 -4852 1570 205 80 27 chr3 8124470 8124846 -219399732 - MSTD LTR MaLR 0 396 1 4256 250 95 32 chr3 8124846 8125233 -219399345 + L1MB7 LINE L1 2107 2468 -4491 444 243 84 61 chr3 8125352 8125686 -219398892 + L1MB7 LINE L1 2476 2820 -4318 6093 88 34 0 chr3 8125686 8126666 -219397912 + L1PA13 LINE L1 5152 6161 -2 444 243 84 61 chr3 8126666 8126677 -219397901 + L1MB7 LINE L1 2820 2829 -4309 2940 204 31 0 chr3 8126702 8127339 -219397239 + L1MB7 LINE L1 6328 6984 -11 344 320 0 33 chr3 8127443 8127596 -219396982 - MIR SINE MIR -95 167 20 608 288 149 10 chr3 8127700 8128117 -219396461 - L1ME4a LINE L1 -99 6022 5548 207 333 0 0 chr3 8128163 8128214 -219396364 + MIR SINE MIR 36 86 -176 273 111 89 0 chr3 8128216 8128261 -219396317 - MLT2D LTR ERVL 0 414 366 1141 219 84 43 chr3 8128346 8128693 -219395885 - MLT2D LTR ERVL -53 361 1 382 228 150 16 chr3 8128715 8128842 -219395736 + MIR SINE MIR 111 254 -8 32 86 0 0 chr3 8129024 8129105 -219395473 + AT_rich Low_complexity Low_complexity 1 81 0 1414 216 20 26 chr3 8129179 8129530 -219395048 + MLT1A1 LTR MaLR 1 349 -16 182 351 60 45 chr3 8129869 8130003 -219394575 - L2 LINE L2 -183 3089 2954 237 178 0 0 chr3 8131282 8131327 -219393251 - MER5A DNA MER1_type -137 52 8 28 29 0 0 chr3 8131504 8131539 -219393039 + AT_rich Low_complexity Low_complexity 1 35 0 226 244 0 49 chr3 8131631 8131713 -219392865 - HAL1b LINE L1 -519 829 752 2640 113 3 0 chr3 8132124 8132487 -219392091 - THE1B LTR MaLR 0 364 1 187 54 54 27 chr3 8132594 8132631 -219391947 + (TATG)n Simple_repeat Simple_repeat 2 39 0 363 336 52 8 chr3 8133036 8133170 -219391408 - MIR3 SINE MIR -63 145 6 2482 140 36 10 chr3 8133292 8133707 -219390871 - MSTA LTR MaLR 0 428 3 1827 169 13 3 chr3 8133849 8134151 -219390427 - AluJb SINE Alu -7 305 1 200 288 14 27 chr3 8134185 8134258 -219390320 + L2 LINE L2 2323 2394 -920 698 324 106 23 chr3 8134283 8134908 -219389670 + L2 LINE L2 2565 3243 -70 2340 168 24 0 chr3 8134909 8135327 -219389251 + MSTA LTR MaLR 1 428 0 1791 140 66 41 chr3 8137459 8137823 -219386755 + THE1C LTR MaLR 1 373 -2 22 0 0 0 chr3 8138193 8138215 -219386363 + AT_rich Low_complexity Low_complexity 1 22 0 569 276 75 10 chr3 8138509 8138916 -219385662 - L1 LINE L1 -2597 3549 3112 1369 176 82 34 chr3 8139091 8139536 -219385042 - LTR10A LTR ERV1 -79 530 1 189 303 13 26 chr3 8139676 8139752 -219384826 + MIR SINE MIR 188 262 0 4786 136 2 67 chr3 8140227 8141058 -219383520 - THE1C-int LTR MaLR -726 854 86 5644 75 13 1 chr3 8141058 8141815 -219382763 - MER4E LTR ERV1 0 766 1 4786 136 2 67 chr3 8141815 8141894 -219382684 - THE1C-int LTR MaLR -1494 86 3 1852 152 76 22 chr3 8141896 8142252 -219382326 - THE1C LTR MaLR 0 375 1 395 247 7 41 chr3 8142264 8142410 -219382168 + MER104 DNA Tc2 39 179 -1 297 309 166 7 chr3 8142571 8142710 -219381868 + MER91A DNA MER1_type 1 161 -35 432 337 96 33 chr3 8142969 8143458 -219381120 + MLT1K LTR MaLR 16 535 -53 264 314 0 10 chr3 8143582 8143684 -219380894 + CT-rich Low_complexity Low_complexity 2 102 0 208 280 178 37 chr3 8144092 8144199 -219380379 + L2 LINE L2 3192 3313 0 2534 140 24 2 chr3 8144544 8144957 -219379621 + MSTB LTR MaLR 3 424 -2 8137 185 44 9 chr3 8144959 8146554 -219378024 + MSTB-int LTR MaLR 1 1651 0 1971 170 78 18 chr3 8146556 8146956 -219377622 + MSTB LTR MaLR 3 426 0 3076 90 28 0 chr3 8147002 8147435 -219377143 - L1PA11 LINE L1 0 6174 5730 259 266 67 8 chr3 8149094 8149192 -219375386 + MIR SINE MIR 74 175 -68 1995 154 0 0 chr3 8149693 8149985 -219374593 + AluSx SINE Alu 1 292 -20 3434 48 0 0 chr3 8150319 8150734 -219373844 + L1PA7 LINE L1 5733 6147 -7 2099 119 30 0 chr3 8152530 8152833 -219371745 + AluSx SINE Alu 1 312 0 501 288 85 29 chr3 8153067 8153572 -219371006 + L1MC4a LINE L1 3877 4421 -1725 477 317 61 66 chr3 8153793 8153950 -219370628 + L1MC4a LINE L1 4733 4889 -1257 2270 99 3 0 chr3 8153950 8154244 -219370334 - AluSp SINE Alu -18 295 1 477 317 61 66 chr3 8154244 8154480 -219370098 + L1MC4a LINE L1 4889 5124 -1022 1067 273 90 56 chr3 8154627 8155286 -219369292 + L1MC4a LINE L1 5265 5819 -302 210 315 72 9 chr3 8156229 8156340 -219368238 - MIR SINE MIR 0 262 145 324 0 0 0 chr3 8156743 8156779 -219367799 + (A)n Simple_repeat Simple_repeat 1 36 0 3588 120 0 0 chr3 8156970 8157502 -219367076 + L1PA8 LINE L1 5635 6166 -6 2988 224 48 8 chr3 8157916 8158280 -219366298 + MER21B LTR ERV1 4 352 -511 2418 168 26 5 chr3 8158280 8158697 -219365881 - MSTB LTR MaLR 0 426 1 2988 224 48 8 chr3 8158697 8159054 -219365524 + MER21B LTR ERV1 352 754 -109 359 150 75 0 chr3 8159343 8159423 -219365155 - MER53 DNA DNA -81 108 23 355 145 43 0 chr3 8159364 8159433 -219365145 + MER53 DNA DNA 116 187 -2 * 228 182 0 0 chr3 8161290 8161334 -219363244 + (TATATG)n Simple_repeat Simple_repeat 5 48 0 1543 208 7 11 chr3 8161335 8161619 -219362959 - AluJo SINE Alu -21 291 9 233 309 72 31 chr3 8161976 8162073 -219362505 - MIR SINE MIR -66 142 42 273 119 0 0 chr3 8162239 8162281 -219362297 + (CATA)n Simple_repeat Simple_repeat 2 43 0 2456 203 17 67 chr3 8162690 8163334 -219361244 - LTR9 LTR ERV1 0 612 1 1188 177 20 13 chr3 8163339 8163591 -219360987 - HUERS-P3 LTR ERV1 -6 8913 7163 225 263 18 0 chr3 8164507 8164564 -219360014 - L2 LINE L2 -5 3308 3251 555 336 85 24 chr3 8164690 8165068 -219359510 + LTR16C LTR ERVL 76 476 -15 499 270 0 0 chr3 8165082 8165193 -219359385 - MIR SINE MIR -115 147 37 1160 152 5 5 chr3 8165371 8165575 -219359003 + L1MB1 LINE L1 5960 6163 -5 595 238 161 9 chr3 8165609 8165832 -219358746 + MIR SINE MIR 6 262 0 926 216 82 5 chr3 8167308 8167516 -219357062 + MER58A DNA MER1_type 1 224 0 2824 123 82 14 chr3 8167710 8168222 -219356356 - LTR10A LTR ERV1 -62 547 1 12457 207 16 20 chr3 8168271 8171349 -219353229 - LTR10A-int LTR ERV1 0 7784 4065 4571 81 33 0 chr3 8171320 8172038 -219352540 - Harlequin LTR ERV1 -4320 2576 1835 * 329 191 167 0 chr3 8172053 8172137 -219352441 + LTR8 LTR ERV1 156 253 -438 1324 91 5 5 chr3 8172141 8172339 -219352239 - LTR10A-int LTR ERV1 -2805 2781 2584 * 4213 239 14 23 chr3 8172335 8173539 -219351039 - LTR10A-int LTR ERV1 -3034 4112 2686 2893 187 6 6 chr3 8173519 8174239 -219350339 - LTR10A-int LTR ERV1 -3963 2686 2202 * 314 157 79 0 chr3 8174227 8174316 -219350262 - LTR10A-int LTR ERV1 -4705 1944 1849 * 365 198 10 0 chr3 8174319 8174420 -219350158 + CT-rich Low_complexity Low_complexity 2 103 0 3997 114 5 3 chr3 8174452 8175084 -219349494 - LTR10A-int LTR ERV1 -4783 1866 1234 2533 141 53 4 chr3 8175068 8175522 -219349056 - LTR10A-int LTR ERV1 -5628 1021 546 * 1456 180 21 7 chr3 8175636 8175920 -219348658 - LTR10A-int LTR ERV1 -6359 290 3 2858 126 78 17 chr3 8175933 8176449 -219348129 - LTR10A LTR ERV1 -62 547 1 307 241 41 76 chr3 8176975 8177120 -219347458 - L2 LINE L2 -2 3311 3172 453 277 124 10 chr3 8177130 8177332 -219347246 + MIR SINE MIR 31 255 -7 1661 181 107 60 chr3 8177553 8178066 -219346512 - LTR10A LTR ERV1 -61 548 12 16234 102 29 51 chr3 8178077 8180925 -219343653 - Harlequin LTR ERV1 -4 6645 1906 11519 56 1 3 chr3 8180925 8183164 -219341414 - L1PA5 LINE L1 -13 6141 3906 16234 102 29 51 chr3 8183164 8184164 -219340414 - Harlequin LTR ERV1 -4743 1906 886 488 288 71 91 chr3 8184542 8184882 -219339696 - L2 LINE L2 -1 3271 2939 334 253 0 0 chr3 8184882 8184961 -219339617 - MER116 DNA Mariner 0 80 2 3005 165 25 77 chr3 8185563 8186292 -219338286 - LTR8 LTR ERV1 0 691 1 545 286 33 15 chr3 8187174 8187376 -219337202 - MIR SINE MIR -19 243 33 676 206 32 0 chr3 8187384 8187510 -219337068 - FLAM_A SINE Alu -12 130 1 341 385 37 7 chr3 8187544 8187679 -219336899 + MER5A DNA MER1_type 14 152 -37 346 197 215 5 chr3 8188198 8188307 -219336271 - MER5A DNA MER1_type 0 189 48 * 416 208 146 8 chr3 8188296 8188426 -219336152 - MER5A DNA MER1_type -41 148 1 255 248 9 124 chr3 8188657 8188770 -219335808 + MIR SINE MIR 82 181 -81 376 333 85 30 chr3 8188824 8189154 -219335424 + LTR33 LTR ERVL 105 452 -69 365 278 37 25 chr3 8189643 8189805 -219334773 + MLT1J LTR MaLR 347 510 -1 359 325 0 0 chr3 8189958 8190038 -219334540 + L2 LINE L2 3174 3253 -19 21 36 0 0 chr3 8190387 8190415 -219334163 + AT_rich Low_complexity Low_complexity 1 28 0 21 0 0 0 chr3 8191207 8191228 -219333350 + AT_rich Low_complexity Low_complexity 1 21 0 395 339 41 67 chr3 8191338 8191927 -219332651 - L2 LINE L2 -2 3311 2741 1662 229 25 15 chr3 8192014 8192416 -219332162 + MLT2D LTR ERVL 1 406 -8 905 216 114 24 chr3 8193090 8193387 -219331191 + MER5C DNA MER1_type 1 324 0 23 0 0 0 chr3 8194151 8194174 -219330404 + AT_rich Low_complexity Low_complexity 1 23 0 475 195 27 87 chr3 8194738 8194887 -219329691 - MER5A DNA MER1_type -46 143 4 2116 148 0 7 chr3 8195433 8195743 -219328835 + AluSq SINE Alu 1 308 -5 424 190 153 21 chr3 8195759 8195937 -219328641 - MER58 DNA MER1_type -1 2419 1 2309 114 0 0 chr3 8196014 8196311 -219328267 - AluSc SINE Alu -12 297 1 2159 77 46 3 chr3 8196313 8196598 -219327980 - AluSx SINE Alu -15 297 1 21 0 0 0 chr3 8196598 8196619 -219327959 + AT_rich Low_complexity Low_complexity 1 21 0 428 286 160 28 chr3 8197128 8197341 -219327237 - MIR SINE MIR -11 251 11 189 107 0 0 chr3 8197519 8197547 -219327031 + (TCCCC)n Simple_repeat Simple_repeat 3 30 0 346 108 31 0 chr3 8197670 8197735 -219326843 + C-rich Low_complexity Low_complexity 4 70 0 1048 199 28 5 chr3 8197999 8198210 -219326368 - MER58A DNA MER1_type -3 221 6 577 306 41 30 chr3 8198470 8198741 -219325837 + MLT1G1 LTR MaLR 11 284 -311 354 23 0 0 chr3 8198944 8198987 -219325591 + (CA)n Simple_repeat Simple_repeat 1 43 0 782 236 15 10 chr3 8199162 8199357 -219325221 + MER58A DNA MER1_type 21 216 -8 441 281 84 0 chr3 8199363 8199530 -219325048 + MLT1G1 LTR MaLR 410 590 0 621 269 31 62 chr3 8200833 8201090 -219323488 + MIR SINE MIR 7 255 -7 2005 136 48 57 chr3 8201783 8202260 -219322318 + ERVL-B1 LTR ERVL 5285 5757 -7 1091 228 31 49 chr3 8202260 8202697 -219321881 + MLT2B1 LTR ERVL 1 434 -30 456 51 0 0 chr3 8202697 8202756 -219321822 + (TCTA)n Simple_repeat Simple_repeat 4 62 0 1091 228 31 49 chr3 8202756 8202787 -219321791 + MLT2B1 LTR ERVL 434 464 0 444 180 0 22 chr3 8202962 8203051 -219321527 + LTR16A1 LTR ERVL 371 457 0 196 152 0 0 chr3 8204243 8204276 -219320302 + MIR SINE MIR 157 189 -73 304 294 101 0 chr3 8204712 8204831 -219319747 - MER117 DNA MER1_type -65 132 2 526 162 48 0 chr3 8204913 8205018 -219319560 - L1PA11 LINE L1 0 6174 6065 1226 198 42 6 chr3 8205231 8205544 -219319034 + MER33 DNA MER1_type 1 324 0 225 288 45 30 chr3 8205872 8205938 -219318640 + L2 LINE L2 3166 3232 -40 591 293 164 8 chr3 8206082 8206338 -219318240 - LTR16C LTR ERVL -10 481 186 275 322 71 31 chr3 8207686 8207915 -219316663 + L2 LINE L2 2772 3009 -263 209 181 193 48 chr3 8208381 8208464 -219316114 + L2 LINE L2 3219 3313 0 529 272 26 79 chr3 8209354 8209755 -219314823 + L2 LINE L2 2569 3029 -243 1679 215 28 50 chr3 8209773 8210238 -219314340 + MLT2B1 LTR ERVL 6 460 -60 258 280 57 64 chr3 8210307 8210464 -219314114 + L2 LINE L2 3122 3277 -36 2206 101 0 14 chr3 8211091 8211377 -219313201 - AluSc SINE Alu -8 301 20 2038 138 7 0 chr3 8211850 8212139 -219312439 - AluSx SINE Alu -19 293 3 180 0 0 0 chr3 8212236 8212256 -219312322 + (A)n Simple_repeat Simple_repeat 1 20 0 257 248 40 40 chr3 8212351 8212452 -219312126 - Charlie7 DNA MER1_type -2506 106 6 433 188 38 47 chr3 8212805 8213005 -219311573 + MER5C DNA MER1_type 3 280 -44 956 244 58 46 chr3 8213008 8213402 -219311176 + L1MA9 LINE L1 5876 6274 -38 202 189 0 0 chr3 8213446 8213483 -219311095 + MER5C DNA MER1_type 288 324 0 1770 72 0 32 chr3 8213693 8213944 -219310634 + L1PA6 LINE L1 5912 6154 0 323 278 38 15 chr3 8214220 8214353 -219310225 + MIR SINE MIR 79 214 -48 185 402 43 0 chr3 8214408 8214525 -219310053 - L2 LINE L2 -1 3312 3191 235 390 41 8 chr3 8214561 8214684 -219309894 + L2 LINE L2 3143 3269 -3 435 280 148 7 chr3 8214710 8215044 -219309534 - LTR16C LTR ERVL -31 460 50 25 0 0 0 chr3 8215265 8215290 -219309288 + AT_rich Low_complexity Low_complexity 1 25 0 463 300 176 5 chr3 8215624 8215834 -219308744 - MIR SINE MIR -12 250 5 362 264 50 41 chr3 8218565 8218686 -219305892 - L2 LINE L2 -1 3312 3191 2160 127 3 3 chr3 8218692 8218992 -219305586 - AluSx SINE Alu -12 300 1 235 361 31 0 chr3 8219058 8219188 -219305390 - MIR SINE MIR -6 256 123 389 289 49 14 chr3 8219207 8219349 -219305229 - MIR SINE MIR 0 262 116 356 213 53 43 chr3 8219761 8219855 -219304723 - MIR3 SINE MIR -15 193 99 701 235 42 0 chr3 8220126 8220292 -219304286 - MER5B DNA MER1_type -5 173 1 463 344 46 15 chr3 8220348 8220543 -219304035 - MIR SINE MIR -4 258 58 246 225 25 12 chr3 8220964 8221044 -219303534 + MLT1L LTR MaLR 181 261 -354 247 244 122 0 chr3 8221621 8221703 -219302875 + MLT1L LTR MaLR 517 608 -7 639 311 6 0 chr3 8221719 8221896 -219302682 - MER45A DNA AcHobo 0 178 1 180 326 54 71 chr3 8223205 8223389 -219301189 + L2 LINE L2 2873 3053 -219 1526 120 6 28 chr3 8223619 8223894 -219300684 - L1PA16 LINE L1 -457 5727 5462 1450 123 27 116 chr3 8223910 8224412 -219300166 + L1PA16 LINE L1 5719 6129 -2 222 313 104 0 chr3 8224564 8224631 -219299947 + L2 LINE L2 3240 3313 0 660 233 29 71 chr3 8225703 8226018 -219298560 - MLT1E2 LTR MaLR -304 201 2 394 313 46 0 chr3 8227039 8227170 -219297408 + L2 LINE L2 2670 2806 -508 192 206 143 32 chr3 8227174 8227237 -219297341 + MER5C DNA MER1_type 1 70 -254 272 288 25 0 chr3 8227347 8227427 -219297151 + (TATATG)n Simple_repeat Simple_repeat 6 87 0 426 256 22 112 chr3 8227476 8227788 -219296790 + L2 LINE L2 3020 3303 -10 219 186 0 0 chr3 8227831 8227874 -219296704 + (TAAA)n Simple_repeat Simple_repeat 3 45 0 213 39 0 0 chr3 8227874 8227900 -219296678 + (CA)n Simple_repeat Simple_repeat 2 27 0 3828 148 43 40 chr3 8227903 8228676 -219295902 - LTR1 LTR ERV1 0 785 11 229 247 82 24 chr3 8229561 8229646 -219294932 - MIR SINE MIR -70 192 103 889 230 25 0 chr3 8229755 8229990 -219294588 + L1MA9 LINE L1 6035 6275 -37 531 261 84 104 chr3 8230091 8230239 -219294339 - L1MC4 LINE L1 -1 8041 7892 486 0 0 0 chr3 8230239 8230293 -219294285 + (CA)n Simple_repeat Simple_repeat 2 55 0 1110 195 125 35 chr3 8230295 8230608 -219293970 - MER2 DNA MER2_type -3 341 1 531 261 84 104 chr3 8230608 8231215 -219293363 - L1MC4 LINE L1 -151 7891 7298 613 268 93 34 chr3 8231228 8231616 -219292962 - L1M4 LINE L1 -3042 3104 2694 1100 200 17 13 chr3 8231725 8232025 -219292553 - L1MEc LINE L1 -1388 4692 4392 2126 224 48 64 chr3 8232037 8232312 -219292266 - L1MEc LINE L1 -2701 3379 3101 3123 127 8 0 chr3 8232312 8232794 -219291784 + LTR19A LTR ERV1 1 486 0 2126 224 48 64 chr3 8232794 8232960 -219291618 - L1MEc LINE L1 -2979 3101 2934 7107 57 18 3 chr3 8232960 8234479 -219290099 - L1PA6 LINE L1 -8 6146 4616 2126 224 48 64 chr3 8234479 8234937 -219289641 - L1MEc LINE L1 -3146 2934 2494 512 277 90 30 chr3 8235061 8235592 -219288986 - L1MEc LINE L1 -4574 1687 1125 2710 194 39 28 chr3 8235659 8236349 -219288229 - L1MA9 LINE L1 -108 6204 5507 226 281 117 10 chr3 8236383 8236682 -219287896 - L1MEc LINE L1 -5056 1014 684 272 150 33 0 chr3 8236682 8236742 -219287836 + (CTATT)n Simple_repeat Simple_repeat 1 62 0 257 239 60 26 chr3 8237053 8237170 -219287408 - L1MC4 LINE L1 -820 7222 7102 904 279 106 19 chr3 8237184 8237717 -219286861 - L1MC4 LINE L1 -886 6993 6346 355 167 0 0 chr3 8237720 8237786 -219286792 - L1ME2 LINE L1 -11 6153 6088 873 165 16 5 chr3 8238873 8239061 -219285517 - L1MC3 LINE L1 -1 7784 7595 1892 221 51 26 chr3 8239116 8239583 -219284995 - MLT2B1 LTR ERVL -41 479 1 1528 232 41 14 chr3 8239583 8240070 -219284508 + L1MC4 LINE L1 7542 8041 -1 2482 84 0 0 chr3 8240102 8240413 -219284165 - AluY SINE Alu 0 311 1 300 267 44 11 chr3 8240519 8240609 -219283969 - L2 LINE L2 -10 3303 3211 300 359 56 26 chr3 8240683 8240878 -219283700 - L2 LINE L2 -671 2643 2443 2445 61 0 0 chr3 8241453 8241750 -219282828 - AluY SINE Alu -10 301 5 230 253 44 33 chr3 8241788 8241879 -219282699 + HAL1 LINE L1 151 242 -2265 395 303 44 26 chr3 8241956 8242227 -219282351 + HAL1 LINE L1 2229 2504 -3 493 215 74 60 chr3 8242591 8242740 -219281838 - MER5B DNA MER1_type 0 178 28 400 296 8 0 chr3 8242842 8242974 -219281604 + MER117 DNA MER1_type 5 137 -60 23 0 0 0 chr3 8243063 8243086 -219281492 + AT_rich Low_complexity Low_complexity 1 23 0 248 325 105 44 chr3 8243261 8243375 -219281203 + L2 LINE L2 3144 3264 -8 426 283 46 16 chr3 8244028 8244339 -219280239 + MLT1G1 LTR MaLR 1 292 -298 577 286 68 32 chr3 8244697 8244917 -219279661 + MIR SINE MIR 32 259 -3 2303 62 7 36 chr3 8245550 8245855 -219278723 + AluY SINE Alu 1 296 -15 3208 70 14 0 chr3 8247020 8247575 -219277003 + L1P3 LINE L1 5137 5700 -454 366 235 137 10 chr3 8247729 8247831 -219276747 + LTR33 LTR ERVL 78 192 -329 26 0 0 0 chr3 8248306 8248332 -219276246 + AT_rich Low_complexity Low_complexity 1 26 0 1228 205 15 11 chr3 8248417 8248743 -219275835 + MSTD LTR MaLR 13 396 0 183 129 0 0 chr3 8249981 8250012 -219274566 + (A)n Simple_repeat Simple_repeat 1 31 0 21 36 0 0 chr3 8250065 8250093 -219274485 + AT_rich Low_complexity Low_complexity 1 28 0 1170 50 0 38 chr3 8250495 8250654 -219273924 - AluY SINE Alu -1 310 158 198 304 63 13 chr3 8251880 8251959 -219272619 + MIR3 SINE MIR 118 200 -8 473 287 0 17 chr3 8253101 8253216 -219271362 - L2 LINE L2 -1 3271 3159 1501 250 108 14 chr3 8253241 8253733 -219270845 - MLT1F LTR MaLR -2 540 3 317 371 5 27 chr3 8253877 8254063 -219270515 - L2 LINE L2 -237 3035 2854 229 122 0 0 chr3 8254210 8254251 -219270327 - L1MB3 LINE L1 -7 6176 6136 1989 213 6 15 chr3 8254257 8254726 -219269852 - L1MB4 LINE L1 -114 6066 5602 443 111 10 61 chr3 8254750 8254849 -219269729 - L1MA5 LINE L1 0 6300 6207 2433 90 0 13 chr3 8254863 8255174 -219269404 - AluSg SINE Alu -3 307 1 1895 126 7 32 chr3 8256072 8256381 -219268197 + AluSx SINE Alu 1 301 -11 413 165 10 0 chr3 8257679 8257776 -219266802 + CT-rich Low_complexity Low_complexity 3 100 0 1096 306 126 61 chr3 8259276 8260355 -219264223 + L2 LINE L2 1986 3168 -145 1985 127 7 0 chr3 8260355 8260646 -219263932 + AluY SINE Alu 1 293 -18 1096 306 126 61 chr3 8260646 8260803 -219263775 + L2 LINE L2 3168 3313 0 198 420 23 0 chr3 8260968 8261099 -219263479 - L2 LINE L2 -345 2968 2835 1189 195 125 8 chr3 8261149 8261405 -219263173 - AluJb SINE Alu -19 293 8 185 237 32 75 chr3 8261955 8262048 -219262530 + MIR SINE MIR 174 262 0 991 171 28 32 chr3 8262117 8262333 -219262245 + MER20 DNA MER1_type 1 215 -4 233 289 36 12 chr3 8262417 8262500 -219262078 + L2 LINE L2 3185 3269 -3 478 316 23 6 chr3 8263003 8263174 -219261404 + MER5B DNA MER1_type 3 176 -2 217 278 42 14 chr3 8263530 8263602 -219260976 - L2 LINE L2 -2 3270 3197 726 212 7 0 chr3 8264567 8264704 -219259874 + MER5A DNA MER1_type 2 139 -50 482 168 147 7 chr3 8264722 8264865 -219259713 - L1MC3 LINE L1 -187 7598 7436 266 197 42 0 chr3 8264874 8264945 -219259633 - L1ME2 LINE L1 -1 6163 6090 292 210 0 0 chr3 8264947 8265009 -219259569 + MER5A DNA MER1_type 127 188 -1 198 286 48 0 chr3 8265226 8265289 -219259289 - MIR SINE MIR 0 262 197 12665 135 32 10 chr3 8265297 8267475 -219257103 + Tigger1 DNA MER2_type 24 2249 -169 317 127 82 9 chr3 8267486 8267596 -219256982 + (TA)n Simple_repeat Simple_repeat 2 119 0 263 60 15 104 chr3 8267596 8267663 -219256915 + LTR66 LTR ERVL 379 439 -171 1566 197 50 9 chr3 8267711 8268031 -219256547 + LTR32 LTR ERVL 15 347 -124 666 232 0 19 chr3 8268131 8268286 -219256292 + LTR32 LTR ERVL 320 471 0 922 113 0 33 chr3 8268286 8268436 -219256142 + Tigger1 DNA MER2_type 2274 2418 0 246 358 20 47 chr3 8268960 8269108 -219255470 + MER5A DNA MER1_type 31 174 -15 718 233 28 128 chr3 8270320 8270363 -219254215 - MLT2D LTR ERVL -1 413 367 321 26 0 0 chr3 8270363 8270401 -219254177 + (TG)n Simple_repeat Simple_repeat 2 39 0 718 233 28 128 chr3 8270401 8270816 -219253762 - MLT2D LTR ERVL -47 367 1 3342 155 16 75 chr3 8271241 8271975 -219252603 + LTR8 LTR ERV1 1 691 0 604 290 6 0 chr3 8274160 8274322 -219250256 - MIR SINE MIR -8 254 92 465 256 80 8 chr3 8274375 8274500 -219250078 - MER45A DNA AcHobo -44 134 1 180 111 0 0 chr3 8274581 8274608 -219249970 + (T)n Simple_repeat Simple_repeat 1 27 0 1105 93 3 2 chr3 8274651 8274948 -219249630 + THE1A LTR MaLR 1 355 0 187 326 0 0 chr3 8277547 8277590 -219246988 - MIR SINE MIR -10 252 210 451 312 145 14 chr3 8278641 8278862 -219245716 - MIR SINE MIR 0 262 13 183 372 88 9 chr3 8278918 8279031 -219245547 + L2 LINE L2 3147 3268 -4 1147 209 83 55 chr3 8279119 8279555 -219245023 + LTR37B LTR ERV1 21 468 0 23 0 0 0 chr3 8279574 8279597 -219244981 + AT_rich Low_complexity Low_complexity 1 23 0 504 313 55 20 chr3 8279647 8279848 -219244730 - MIR SINE MIR -46 216 9 704 291 58 21 chr3 8279968 8280209 -219244369 - MIR SINE MIR 0 262 13 1770 128 89 13 chr3 8280730 8281034 -219243544 - MER1B DNA MER1_type 0 339 13 390 288 6 106 chr3 8281219 8281389 -219243189 - MER5A DNA MER1_type -36 153 1 207 222 0 48 chr3 8281631 8281694 -219242884 + GA-rich Low_complexity Low_complexity 1 60 0 1354 195 91 21 chr3 8281849 8281978 -219242600 + MLT1A1 LTR MaLR 3 121 -244 2345 84 7 0 chr3 8281978 8282276 -219242302 + AluY SINE Alu 6 305 -6 1354 195 91 21 chr3 8282276 8282485 -219242093 + MLT1A1 LTR MaLR 121 365 0 267 295 71 27 chr3 8282798 8282910 -219241668 + L2 LINE L2 3153 3269 -3 321 241 19 46 chr3 8283956 8284064 -219240514 - MLT1G1 LTR MaLR -25 570 466 510 289 50 5 chr3 8284141 8284382 -219240196 - MLT1H1 LTR MaLR -291 264 8 727 272 110 4 chr3 8284382 8284610 -219239968 + MIR SINE MIR 11 262 0 2556 61 0 0 chr3 8286458 8286769 -219237809 + AluY SINE Alu 1 311 0 22 0 0 0 chr3 8286863 8286885 -219237693 + AT_rich Low_complexity Low_complexity 1 22 0 219 209 12 23 chr3 8287000 8287086 -219237492 + (TTA)n Simple_repeat Simple_repeat 3 87 0 211 203 31 0 chr3 8287354 8287418 -219237160 + CT-rich Low_complexity Low_complexity 3 68 0 852 202 52 15 chr3 8287604 8287871 -219236707 + Charlie1b DNA MER1_type 149 425 -98 10022 38 4 1 chr3 8287874 8289874 -219234704 - L1PA4 LINE L1 -2 6153 4144 2755 40 0 0 chr3 8289874 8290228 -219234350 + L1P LINE L1 3831 4184 -1962 251 222 62 37 chr3 8290239 8290320 -219234258 + Charlie1b DNA MER1_type 435 517 -6 472 309 101 53 chr3 8290475 8291153 -219233425 - L1M4 LINE L1 -1085 5061 4356 279 185 31 15 chr3 8291442 8291507 -219233071 - MSTB2 LTR MaLR -391 66 1 1159 174 28 0 chr3 8292567 8292779 -219231799 - MER20 DNA MER1_type -1 218 1 27 62 0 0 chr3 8294013 8294061 -219230517 + AT_rich Low_complexity Low_complexity 1 48 0 2167 118 0 3 chr3 8294140 8294437 -219230141 + AluSg SINE Alu 1 296 -14 243 329 27 7 chr3 8294548 8294694 -219229884 - L1ME LINE L1 -233 5888 5740 1715 200 115 16 chr3 8294826 8295251 -219229327 + MLT1C LTR MaLR 1 467 0 182 197 15 76 chr3 8295505 8295571 -219229007 - MIR SINE MIR -16 246 185 410 269 15 54 chr3 8297239 8297369 -219227209 - L2 LINE L2 0 3272 3148 2381 67 0 0 chr3 8298878 8299189 -219225389 - AluY SINE Alu 0 311 1 442 316 58 12 chr3 8299582 8299753 -219224825 + MER5A DNA MER1_type 3 181 -8 509 304 40 13 chr3 8300374 8300598 -219223980 + MIR SINE MIR 33 262 0 241 222 74 28 chr3 8300958 8301066 -219223512 + LTR67 LTR ERVL 442 554 -3 276 303 23 8 chr3 8301201 8301333 -219223245 - L1ME LINE L1 -278 5843 5710 2241 185 58 28 chr3 8302628 8303245 -219221333 - Charlie1b DNA MER1_type -35 488 2091 972 183 33 15 chr3 8303245 8303591 -219220987 - MER31B LTR ERV1 -72 394 1 2719 214 67 30 chr3 8303593 8304350 -219220228 - Charlie1a DNA MER1_type -669 786 2 330 26 0 0 chr3 8304466 8304505 -219220073 + (TG)n Simple_repeat Simple_repeat 2 40 0 356 265 0 10 chr3 8304505 8304607 -219219971 + GA-rich Low_complexity Low_complexity 2 102 0 878 101 62 0 chr3 8305566 8305695 -219218883 + AluSc SINE Alu 165 301 -8 515 329 102 12 chr3 8305825 8306150 -219218428 + L1ME4a LINE L1 5590 5943 -178 2563 20 0 0 chr3 8307513 8307805 -219216773 + AluY SINE Alu 1 292 -19 561 355 22 16 chr3 8308365 8308548 -219216030 - MER91A DNA MER1_type -12 184 1 912 262 32 26 chr3 8309220 8309533 -219215045 - MER110 LTR ERV1 0 491 177 196 244 22 0 chr3 8310112 8310157 -219214421 + MIR SINE MIR 100 145 -63 592 259 49 11 chr3 8310202 8310387 -219214191 - MIR SINE MIR -13 249 58 333 320 28 118 chr3 8310633 8310989 -219213589 - L3 LINE CR1 -208 1369 1046 444 330 14 46 chr3 8311247 8311465 -219213113 + MIR SINE MIR 26 236 -26 2068 148 3 0 chr3 8311936 8312234 -219212344 - AluSx SINE Alu -13 299 1 219 258 54 54 chr3 8313346 8313439 -219211139 - MIR SINE MIR -94 168 76 1202 264 41 90 chr3 8313607 8314504 -219210074 - L1ME LINE L1 -5182 888 36 706 238 16 21 chr3 8314756 8314945 -219209633 - MER58A DNA MER1_type 0 224 37 4270 150 29 37 chr3 8316017 8316478 -219208100 - Tigger1 DNA MER2_type -9 2409 1957 3581 87 8 0 chr3 8316478 8316972 -219207606 + L1PA14 LINE L1 5664 6161 0 4270 150 29 37 chr3 8316972 8317351 -219207227 - Tigger1 DNA MER2_type -461 1957 1576 14219 167 18 24 chr3 8317357 8323365 -219201213 - L1MA3 LINE L1 0 7724 1091 333 0 0 0 chr3 8323365 8323402 -219201176 + (TG)n Simple_repeat Simple_repeat 2 38 0 14219 167 18 24 chr3 8323402 8324473 -219200105 - L1MA3 LINE L1 -6633 1091 16 9290 130 30 1 chr3 8324479 8325997 -219198581 - Tigger1 DNA MER2_type -834 1584 24 364 258 13 71 chr3 8326933 8326947 -219197631 + MER5A DNA MER1_type 1 5 -184 292 238 62 94 chr3 8326947 8327107 -219197471 - MER5A DNA MER1_type -2 187 33 554 327 115 4 chr3 8328092 8328318 -219196260 - MIR SINE MIR -10 252 2 187 292 0 31 chr3 8328526 8328591 -219195987 - MIR3 SINE MIR -13 195 133 261 0 0 0 chr3 8328750 8328779 -219195799 + (T)n Simple_repeat Simple_repeat 1 29 0 465 260 78 32 chr3 8328889 8329043 -219195535 - MIR SINE MIR 0 262 102 198 0 0 0 chr3 8329103 8329125 -219195453 + (TGAA)n Simple_repeat Simple_repeat 1 22 0 7828 117 17 33 chr3 8330227 8331522 -219193056 - THE1B-int LTR MaLR -300 1280 7 2002 146 30 0 chr3 8331535 8331870 -219192708 - THE1B LTR MaLR -12 352 8 512 212 48 7 chr3 8331912 8332058 -219192520 - L1MD2 LINE L1 -13 6582 6431 3044 205 28 20 chr3 8332059 8332921 -219191657 - L1MD1 LINE L1 -208 6270 5515 2577 188 21 0 chr3 8332922 8333391 -219191187 - LTR42 LTR ERVL 0 495 17 255 273 0 15 chr3 8333409 8333475 -219191103 - PABL_B-int LTR ERV1 -696 6062 5998 401 302 0 0 chr3 8333723 8333829 -219190749 - PABL_B-int LTR ERV1 -450 6672 6567 207 0 0 0 chr3 8333980 8334003 -219190575 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 207 69 0 0 chr3 8334788 8334817 -219189761 + (A)n Simple_repeat Simple_repeat 1 29 0 656 319 58 47 chr3 8336785 8337292 -219187286 - LTR57-int LTR ERVL -3177 2870 2370 2082 169 53 19 chr3 8337292 8337707 -219186871 + MSTB1 LTR MaLR 4 432 0 656 319 58 47 chr3 8337707 8338188 -219186390 - LTR57-int LTR ERVL -3677 2370 1718 2564 175 50 8 chr3 8339978 8340453 -219184125 - LTR42 LTR ERVL 0 495 1 1549 253 6 37 chr3 8340453 8340962 -219183616 - L1MD1 LINE L1 -866 5516 5024 452 284 50 44 chr3 8340969 8341242 -219183336 - L1MD1 LINE L1 -3686 2696 2414 1700 189 0 0 chr3 8341242 8341539 -219183039 - AluJb SINE Alu -15 297 1 452 284 50 44 chr3 8341539 8341684 -219182894 - L1MD1 LINE L1 -3968 2414 2271 445 318 61 20 chr3 8341982 8342466 -219182112 - L1MD1 LINE L1 -4512 1870 1266 393 365 66 5 chr3 8342754 8342965 -219181613 - L1MD1 LINE L1 -5451 921 698 847 163 94 0 chr3 8343285 8343445 -219181133 + FRAM SINE Alu 1 174 -2 2746 84 25 5 chr3 8343512 8343906 -219180672 - L1PA13 LINE L1 0 6163 5762 1416 211 33 86 chr3 8343915 8344394 -219180184 + L1ME3 LINE L1 5709 6162 0 334 226 24 36 chr3 8345193 8345277 -219179301 + L2 LINE L2 3189 3271 -1 236 264 38 0 chr3 8345539 8345592 -219178986 - L2 LINE L2 -11 3261 3207 211 258 21 62 chr3 8346078 8346175 -219178403 + MIR SINE MIR 170 262 0 481 332 35 26 chr3 8346205 8346437 -219178141 + MIR SINE MIR 12 245 -17 247 310 0 0 chr3 8348013 8348071 -219176507 + polypyrimidine Low_complexity Low_complexity 3 60 0 25 0 0 0 chr3 8351297 8351322 -219173256 + AT_rich Low_complexity Low_complexity 1 25 0 710 261 86 27 chr3 8401528 8402049 -219122529 - HAL1b LINE L1 0 1348 797 243 61 0 0 chr3 8402671 8402704 -219121874 + (TTG)n Simple_repeat Simple_repeat 1 33 0 2059 108 0 31 chr3 8402706 8402994 -219121584 - AluSx SINE Alu -33 279 1 208 256 179 96 chr3 8404014 8404170 -219120408 - MIR3 SINE MIR -38 170 2 340 266 190 32 chr3 8404558 8404782 -219119796 + L1ME4a LINE L1 5701 5959 -162 744 237 41 46 chr3 8404847 8405066 -219119512 + MER20 DNA MER1_type 2 219 0 2590 123 5 2 chr3 8405619 8406019 -219118559 + L1PB1 LINE L1 5751 6151 0 23 54 0 0 chr3 8406019 8406056 -219118522 + AT_rich Low_complexity Low_complexity 1 37 0 359 295 100 53 chr3 8406060 8406545 -219118033 - L1MC/D LINE L1 -747 5938 5783 1880 217 61 68 chr3 8406566 8407124 -219117454 + MLT2B3 LTR ERVL 1 554 0 2217 287 76 24 chr3 8407175 8409121 -219115457 - L1MC/D LINE L1 -1007 5533 3467 * 10331 204 24 32 chr3 8409118 8412837 -219111741 - L1PA16 LINE L1 -2 6164 2475 3506 281 86 15 chr3 8412833 8413123 -219111455 - L1MC/D LINE L1 -5149 1391 1123 * 9262 34 1 19 chr3 8413123 8415056 -219109522 - L1PA3 LINE L1 0 6155 4243 3506 281 86 15 chr3 8415056 8416039 -219108539 - L1MC/D LINE L1 -5417 1123 27 1895 286 100 38 chr3 8416042 8418401 -219106177 - L1ME LINE L1 -2295 3785 1302 498 251 107 2 chr3 8418403 8418585 -219105993 + MER58A DNA MER1_type 9 213 0 462 95 0 0 chr3 8418558 8418621 -219105957 + MADE1 DNA Mariner 1 63 -17 * 268 258 51 73 chr3 8418630 8418808 -219105770 - L1ME LINE L1 -4929 1151 978 334 268 176 35 chr3 8418873 8418982 -219105596 - L1ME LINE L1 -5148 934 842 2382 80 6 6 chr3 8418982 8419295 -219105283 - AluSq SINE Alu 0 313 1 334 268 176 35 chr3 8419295 8419505 -219105073 - L1ME LINE L1 -5240 842 677 2319 45 28 0 chr3 8420304 8420593 -219103985 + AluY SINE Alu 1 297 -14 242 216 54 40 chr3 8420593 8420667 -219103911 - MER72 LTR ERV1 -643 79 5 804 155 14 20 chr3 8420669 8420817 -219103761 - FRAM SINE Alu -26 150 4 2325 78 10 0 chr3 8420833 8421128 -219103450 - AluSc SINE Alu -11 298 1 421 211 41 88 chr3 8421154 8421325 -219103253 + L1MC4a LINE L1 5730 5892 -1916 1833 151 18 0 chr3 8421326 8421605 -219102973 + AluSx SINE Alu 1 284 -28 2434 57 0 0 chr3 8421605 8421901 -219102677 + AluY SINE Alu 1 296 -15 347 281 34 0 chr3 8422402 8422491 -219102087 - L2 LINE L2 0 3313 3222 207 100 0 0 chr3 8422594 8422624 -219101954 + (CATA)n Simple_repeat Simple_repeat 2 31 0 862 303 85 8 chr3 8423966 8424329 -219100249 - MLT1I LTR MaLR 0 409 19 572 283 72 0 chr3 8424573 8424753 -219099825 - LTR16C LTR ERVL -2 489 297 317 272 19 19 chr3 8424766 8424869 -219099709 - LTR16B LTR ERVL 0 464 362 494 326 80 5 chr3 8424937 8425124 -219099454 - LTR16B LTR ERVL -263 201 1 348 326 96 17 chr3 8425131 8425309 -219099269 - LTR16C LTR ERVL -210 281 90 2260 109 0 6 chr3 8425494 8425805 -219098773 + AluSq SINE Alu 1 309 -4 388 217 12 12 chr3 8425937 8426020 -219098558 + MIR SINE MIR 86 168 -94 358 274 44 9 chr3 8426034 8426147 -219098431 + MIR SINE MIR 94 210 -52 399 313 94 40 chr3 8426393 8426668 -219097910 + MLT1J LTR MaLR 218 507 -4 203 260 41 55 chr3 8426943 8427016 -219097562 - MIR SINE MIR 0 262 191 389 97 14 0 chr3 8427635 8427707 -219096871 + (TCTA)n Simple_repeat Simple_repeat 2 74 0 2062 131 86 0 chr3 8427724 8428060 -219096518 + Tigger2 DNA MER2_type 2353 2717 -1 234 81 0 0 chr3 8428060 8428097 -219096481 + (TG)n Simple_repeat Simple_repeat 2 38 0 316 179 208 38 chr3 8428785 8428891 -219095687 - L3 LINE CR1 -116 1461 1338 185 108 27 0 chr3 8429170 8429207 -219095371 + A-rich Low_complexity Low_complexity 1 38 0 709 224 0 34 chr3 8429381 8429528 -219095050 + Tigger3(Golem) DNA MER2_type 1 142 -2887 * 1382 177 4 38 chr3 8429526 8429679 -219094899 + Tigger3(Golem) DNA MER2_type 2782 2924 -114 1702 225 80 104 chr3 8429679 8430525 -219094053 + LTR1B LTR ERV1 1 826 0 1382 177 4 38 chr3 8430525 8430637 -219093941 + Tigger3(Golem) DNA MER2_type 2924 3038 0 586 264 52 26 chr3 8431087 8431356 -219093222 - MER97c DNA MER1_type? -1 1089 814 875 259 95 15 chr3 8431634 8431896 -219092682 - MER97a DNA MER1_type? -288 606 324 574 273 65 96 chr3 8432032 8432081 -219092497 + MLT1J LTR MaLR 166 215 -296 1793 116 0 4 chr3 8432081 8432331 -219092247 + AluSg SINE Alu 47 295 -15 574 273 65 96 chr3 8432331 8432603 -219091975 + MLT1J LTR MaLR 215 477 -34 181 214 309 0 chr3 8432768 8432852 -219091726 + MIR SINE MIR 142 251 -11 659 230 105 0 chr3 8433133 8433285 -219091293 + MER96 DNA MER1_type? 8 175 0 545 272 11 88 chr3 8433534 8433817 -219090761 - L1ME3 LINE L1 0 6162 5902 * 1121 246 62 22 chr3 8433814 8434278 -219090300 - L1M4 LINE L1 -1715 4431 3949 2277 229 35 63 chr3 8434362 8434664 -219089914 - L1ME1 LINE L1 -44 6122 5813 1702 163 3 10 chr3 8434664 8434952 -219089626 - AluSx SINE Alu -26 286 1 2277 229 35 63 chr3 8434952 8435444 -219089134 - L1ME1 LINE L1 -353 5813 5350 6709 75 2 5 chr3 8435501 8436812 -219087766 - L1PA6 LINE L1 0 6154 4843 25792 38 3 0 chr3 8436814 8440887 -219083691 + L1PA4 LINE L1 2013 6092 -63 1802 218 46 3 chr3 8441386 8441776 -219082802 - ERVL LTR ERVL -4169 1595 1189 3015 243 73 4 chr3 8441776 8442575 -219082003 - ERVL LTR ERVL -4735 1029 176 539 271 65 72 chr3 8442849 8443373 -219081205 - L1MC4a LINE L1 -820 7222 6618 611 201 7 0 chr3 8443381 8443520 -219081058 - L1MA4A LINE L1 0 6303 6164 2141 185 33 2 chr3 8443520 8444001 -219080577 - L1 LINE L1 -1118 5028 4533 1253 230 84 44 chr3 8444206 8444549 -219080029 - LTR18A LTR ERVL 0 357 1 1902 123 0 32 chr3 8444550 8444859 -219079719 - HERVL18 LTR ERVL 0 6047 5749 1535 151 4 4 chr3 8444860 8445112 -219079466 - HERVL18 LTR ERVL -262 5785 5534 1631 290 39 31 chr3 8445427 8446013 -219078565 + MLT1E LTR MaLR 3 593 0 283 193 0 0 chr3 8446194 8446251 -219078327 - Charlie5 DNA MER1_type -27 2585 2529 276 277 15 42 chr3 8446589 8446828 -219077750 + CT-rich Low_complexity Low_complexity 1 232 0 220 149 19 56 chr3 8446829 8446936 -219077642 + T-rich Low_complexity Low_complexity 5 107 0 6197 35 2 1 chr3 8447028 8448422 -219076156 - L1PA2 LINE L1 -156 5999 4605 36079 88 5 6 chr3 8448523 8454383 -219070195 - L1PA4 LINE L1 -292 5863 11 1950 261 79 19 chr3 8454390 8455287 -219069291 - L1M4 LINE L1 -789 5357 4407 603 224 90 52 chr3 8455329 8455478 -219069100 - L1MCc LINE L1 -6130 293 128 2075 148 0 3 chr3 8455478 8455496 -219069082 - AluSq SINE Alu -9 304 287 333 0 0 0 chr3 8455496 8455533 -219069045 + (TG)n Simple_repeat Simple_repeat 2 38 0 2075 148 0 3 chr3 8455533 8455818 -219068760 - AluSq SINE Alu -26 287 2 603 224 90 52 chr3 8455818 8455936 -219068642 - L1MCc LINE L1 -6295 128 16 479 270 96 17 chr3 8455941 8456296 -219068282 - L1M4 LINE L1 -3177 2969 2587 2016 121 7 33 chr3 8456307 8456613 -219067965 + AluSx SINE Alu 1 298 -14 527 291 24 12 chr3 8456623 8456874 -219067704 - L1M4 LINE L1 -3625 2521 2268 184 294 0 20 chr3 8457019 8457070 -219067508 - L2 LINE L2 -1 3312 3263 271 228 0 18 chr3 8458283 8458340 -219066238 - L2 LINE L2 -94 3219 3164 298 313 91 20 chr3 8459632 8459731 -219064847 + MIR SINE MIR 41 146 -62 294 29 0 0 chr3 8460058 8460093 -219064485 + (TG)n Simple_repeat Simple_repeat 1 35 0 189 373 59 0 chr3 8460131 8460233 -219064345 + L2 LINE L2 3151 3258 -14 1976 133 0 29 chr3 8460357 8460665 -219063913 - AluSx SINE Alu -13 299 1 350 228 60 92 chr3 8461367 8461551 -219063027 + MER5B DNA MER1_type 1 178 0 4236 158 44 31 chr3 8462886 8463798 -219060780 - L1MA9 LINE L1 -2 6310 5387 1092 132 114 9 chr3 8463796 8464023 -219060555 - L1PA15 LINE L1 0 6165 5915 * 557 198 0 16 chr3 8464021 8464142 -219060436 + L1P LINE L1 4527 4645 -1501 * 4127 151 20 35 chr3 8464155 8464873 -219059705 - L1PA15 LINE L1 -257 5908 5181 228 35 0 0 chr3 8464873 8464902 -219059676 + (TG)n Simple_repeat Simple_repeat 1 29 0 4127 151 20 35 chr3 8464902 8465714 -219058864 - L1PA15 LINE L1 -984 5181 4410 4896 214 20 7 chr3 8465724 8466887 -219057691 + L1P LINE L1 2995 4172 -1974 2158 147 57 22 chr3 8466888 8467401 -219057177 + MLT2A2 LTR ERVL 1 554 0 968 193 23 0 chr3 8467403 8467621 -219056957 + L1P LINE L1 4171 4393 -1753 * 3555 242 39 45 chr3 8467618 8468503 -219056075 - L1MA9 LINE L1 -748 5398 4509 1196 129 0 0 chr3 8468503 8468673 -219055905 - AluSq SINE Alu -11 302 133 3555 242 39 45 chr3 8468673 8468803 -219055775 - L1MA9 LINE L1 -1637 4509 4380 189 0 0 0 chr3 8468803 8468824 -219055754 + (TG)n Simple_repeat Simple_repeat 2 22 0 3555 242 39 45 chr3 8468824 8469851 -219054727 - L1MA9 LINE L1 -1766 4380 3293 1104 211 32 12 chr3 8469873 8470119 -219054459 + AluJo SINE Alu 61 311 -1 22 0 0 0 chr3 8470171 8470193 -219054385 + AT_rich Low_complexity Low_complexity 1 22 0 2427 76 0 0 chr3 8470193 8470496 -219054082 - AluY SINE Alu -8 303 1 384 235 53 8 chr3 8470728 8470860 -219053718 + MER113 DNA MER1_type? 1 138 -383 23 54 0 0 chr3 8470890 8470927 -219053651 + AT_rich Low_complexity Low_complexity 1 37 0 206 232 36 18 chr3 8474342 8474398 -219050180 - MIR SINE MIR -154 108 52 254 273 121 0 chr3 8474872 8474971 -219049607 - MLT1K LTR MaLR -106 482 372 1422 113 85 0 chr3 8475448 8475660 -219048918 + MER30 DNA MER1_type 1 230 0 436 299 17 69 chr3 8476787 8477018 -219047560 + MLT1G1 LTR MaLR 60 278 -317 920 112 11 28 chr3 8477154 8477332 -219047246 + (TTCC)n Simple_repeat Simple_repeat 2 176 0 475 306 121 94 chr3 8477903 8478081 -219046497 - L2 LINE L2 0 3272 3100 1659 86 18 0 chr3 8478081 8478303 -219046275 + MER30 DNA MER1_type 5 230 0 475 306 121 94 chr3 8478303 8478907 -219045671 - L2 LINE L2 -172 3100 2430 2167 121 0 0 chr3 8478907 8479212 -219045366 + AluSc SINE Alu 1 305 0 475 306 121 94 chr3 8479212 8479501 -219045077 - L2 LINE L2 -842 2430 2150 21 36 0 0 chr3 8479593 8479621 -219044957 + AT_rich Low_complexity Low_complexity 1 28 0 204 125 0 0 chr3 8480278 8480310 -219044268 + (TTCC)n Simple_repeat Simple_repeat 2 33 0 2522 74 0 0 chr3 8481058 8481370 -219043208 - AluSx SINE Alu 0 312 1 225 0 0 0 chr3 8481702 8481727 -219042851 + (CAAAA)n Simple_repeat Simple_repeat 2 26 0 246 105 0 0 chr3 8481757 8481795 -219042783 + (A)n Simple_repeat Simple_repeat 1 38 0 186 103 0 0 chr3 8482045 8482074 -219042504 + (TTCA)n Simple_repeat Simple_repeat 4 32 0 291 235 92 50 chr3 8482136 8482255 -219042323 - L2 LINE L2 -61 3252 3129 1313 287 85 29 chr3 8482300 8482729 -219041849 + L2 LINE L2 2462 2929 -384 2464 213 25 46 chr3 8482729 8483364 -219041214 + MLT1E3 LTR MaLR 1 622 -2 1313 287 85 29 chr3 8483364 8483499 -219041079 + L2 LINE L2 2929 3055 -258 1971 153 155 23 chr3 8483568 8484000 -219040578 - LTR45B LTR ERV1 0 489 1 336 309 9 36 chr3 8484190 8484300 -219040278 + L2 LINE L2 3173 3279 -34 348 387 61 21 chr3 8484322 8484610 -219039968 - L2 LINE L2 -219 3094 2785 1674 212 111 3 chr3 8484610 8484996 -219039582 + MSTA LTR MaLR 1 428 0 348 387 61 21 chr3 8484996 8485063 -219039515 - L2 LINE L2 -528 2785 2722 223 295 49 0 chr3 8485371 8485432 -219039146 + L2 LINE L2 3228 3291 -22 281 325 145 30 chr3 8485501 8485701 -219038877 + MIR SINE MIR 40 262 0 2854 65 17 12 chr3 8485818 8486220 -219038358 - MLT2A1 LTR ERVL -40 404 1 2377 67 0 7 chr3 8486232 8486530 -219038048 - AluY SINE Alu -15 296 1 24 0 0 0 chr3 8487608 8487632 -219036946 + AT_rich Low_complexity Low_complexity 1 24 0 288 319 115 44 chr3 8487904 8488086 -219036492 - LTR16C LTR ERVL -9 482 288 272 164 0 36 chr3 8488975 8489030 -219035548 - MIR SINE MIR -98 164 112 838 179 48 42 chr3 8489039 8489207 -219035371 - MER5A DNA MER1_type -20 169 1 201 292 186 9 chr3 8489259 8489372 -219035206 + L2 LINE L2 3134 3266 -6 282 244 108 114 chr3 8489983 8490159 -219034419 + MER5B DNA MER1_type 4 178 0 1097 181 67 99 chr3 8490167 8490321 -219034257 - MER58B DNA MER1_type -2079 341 184 1852 156 54 23 chr3 8490321 8490674 -219033904 - THE1B LTR MaLR 0 364 1 10896 103 35 0 chr3 8490674 8492201 -219032377 - THE1B-int LTR MaLR 0 1580 1 1879 154 78 23 chr3 8492201 8492546 -219032032 - THE1B LTR MaLR 0 364 1 1097 181 67 99 chr3 8492546 8492731 -219031847 - MER58B DNA MER1_type -2233 187 11 1140 164 37 85 chr3 8494128 8494518 -219030060 - MLT1A1 LTR MaLR -4 392 1 1637 212 113 42 chr3 8495389 8495893 -219028685 - MLT1F LTR MaLR 0 542 3 341 277 63 19 chr3 8496235 8496394 -219028184 - L1ME LINE L1 -570 5551 5386 22 0 0 0 chr3 8496507 8496529 -219028049 + AT_rich Low_complexity Low_complexity 1 22 0 1948 158 43 3 chr3 8497740 8498087 -219026491 + MER46B DNA MER2_type 1 236 0 187 237 68 93 chr3 8498595 8498713 -219025865 + MIR SINE MIR 147 261 -1 234 105 0 0 chr3 8499434 8499472 -219025106 + (CA)n Simple_repeat Simple_repeat 2 39 0 249 261 11 11 chr3 8499802 8499894 -219024684 - MLT1I LTR MaLR -8 401 310 248 181 28 17 chr3 8500625 8500697 -219023881 - MLT1J1 LTR MaLR -328 118 45 566 134 0 0 chr3 8500798 8500895 -219023683 - L1P LINE L1 -1389 4757 4661 3490 65 0 0 chr3 8500895 8501378 -219023200 + L1PA8 LINE L1 5691 6173 0 560 255 108 28 chr3 8501880 8502092 -219022486 + MIR SINE MIR 34 262 0 180 111 0 0 chr3 8502249 8502276 -219022302 + (CCA)n Simple_repeat Simple_repeat 1 27 0 349 121 69 0 chr3 8502289 8502347 -219022231 + ERVL LTR ERVL 4862 4923 -841 309 26 0 0 chr3 8502352 8502390 -219022188 + (CA)n Simple_repeat Simple_repeat 2 39 0 257 75 25 0 chr3 8502517 8502557 -219022021 + (TG)n Simple_repeat Simple_repeat 2 42 0 251 282 9 0 chr3 8502703 8502813 -219021765 + (TA)n Simple_repeat Simple_repeat 1 111 0 1591 231 5 21 chr3 8502815 8503192 -219021386 - MLT2D LTR ERVL -43 371 1 760 192 0 30 chr3 8503192 8503359 -219021219 - ERVL-D LTR ERVL -7 5757 5596 288 158 0 0 chr3 8503359 8503416 -219021162 + (TA)n Simple_repeat Simple_repeat 1 57 0 180 158 0 0 chr3 8503466 8503504 -219021074 + (TA)n Simple_repeat Simple_repeat 1 38 0 271 255 108 20 chr3 8503615 8503717 -219020861 - MIR SINE MIR -60 202 92 210 71 0 0 chr3 8503811 8503839 -219020739 + (TAAA)n Simple_repeat Simple_repeat 3 30 0 1977 173 32 28 chr3 8505809 8506357 -219018221 - MLT2A2 LTR ERVL 0 554 2 1949 91 22 0 chr3 8507051 8507326 -219017252 + L1PA10 LINE L1 5879 6159 -9 396 0 0 0 chr3 8507327 8507371 -219017207 + (TA)n Simple_repeat Simple_repeat 2 45 0 23 33 0 0 chr3 8507399 8507429 -219017149 + AT_rich Low_complexity Low_complexity 1 30 0 738 243 117 73 chr3 8507507 8507900 -219016678 + MLT1D LTR MaLR 2 421 -84 2110 141 33 25 chr3 8507900 8508261 -219016317 + THE1B LTR MaLR 1 364 0 738 243 117 73 chr3 8508261 8508345 -219016233 + MLT1D LTR MaLR 421 500 -5 245 376 9 9 chr3 8508504 8508613 -219015965 - L2 LINE L2 -15 3298 3190 31 26 0 0 chr3 8509253 8509291 -219015287 + AT_rich Low_complexity Low_complexity 1 38 0 2409 46 0 3 chr3 8509784 8510101 -219014477 - AluY SINE Alu 0 316 1 216 308 13 13 chr3 8511624 8511702 -219012876 + CT-rich Low_complexity Low_complexity 2 79 0 498 254 65 72 chr3 8511796 8512335 -219012243 + L1ME3 LINE L1 4456 4990 -1156 354 281 102 10 chr3 8512434 8512630 -219011948 + L1ME3 LINE L1 5119 5332 -814 2120 138 3 3 chr3 8512677 8512989 -219011589 + AluSx SINE Alu 1 312 0 3292 165 78 44 chr3 8513047 8513888 -219010690 + L1MC3 LINE L1 6908 7777 -8 412 265 137 24 chr3 8514016 8514314 -219010264 + L1ME3 LINE L1 5560 5894 -276 608 191 0 17 chr3 8514660 8514775 -219009803 - FLAM_A SINE Alu -19 114 2 206 226 129 43 chr3 8515994 8516087 -219008491 - L2 LINE L2 -5 3308 3208 523 299 114 0 chr3 8516130 8516297 -219008281 + MIR SINE MIR 49 234 -28 199 188 0 0 chr3 8516397 8516429 -219008149 - MIR SINE MIR -16 246 215 2155 159 55 26 chr3 8517523 8517939 -219006639 - MSTC LTR MaLR 0 428 1 568 279 128 11 chr3 8517939 8518118 -219006460 - MIR SINE MIR -4 258 59 2614 108 59 16 chr3 8518287 8518645 -219005933 + MLT2A1 LTR ERVL 1 342 -102 321 26 0 0 chr3 8518645 8518683 -219005895 + (TC)n Simple_repeat Simple_repeat 2 39 0 189 0 0 0 chr3 8518682 8518703 -219005875 + (TA)n Simple_repeat Simple_repeat 1 21 0 * 2614 108 59 16 chr3 8518683 8518770 -219005808 + MLT2A1 LTR ERVL 342 444 0 305 23 0 23 chr3 8518783 8518826 -219005752 + (TA)n Simple_repeat Simple_repeat 2 43 0 314 88 18 18 chr3 8518873 8518930 -219005648 + MLT2B1 LTR ERVL 464 520 0 27641 70 11 5 chr3 8518930 8522639 -219001939 + HERVL-B1-A1 LTR ERVL 1 3731 -1923 3949 134 176 28 chr3 8522639 8523626 -219000952 + MER11B LTR ERVK 1 1232 -4 14487 69 7 4 chr3 8523631 8525554 -218999024 + HERVL-B1-A1 LTR ERVL 3726 5654 0 1255 110 46 5 chr3 8525554 8525773 -218998805 + MLT2A1 LTR ERVL 1 228 -216 508 90 13 0 chr3 8525773 8525851 -218998727 + L1PA16 LINE L1 6079 6157 -9 323 291 57 19 chr3 8526757 8526915 -218997663 + MLT1K LTR MaLR 354 517 -71 22 70 0 0 chr3 8527413 8527456 -218997122 + AT_rich Low_complexity Low_complexity 1 43 0 394 241 143 0 chr3 8527504 8527637 -218996941 + MER103 DNA DNA 13 164 -2 213 291 121 21 chr3 8527758 8527899 -218996679 + MIR SINE MIR 72 226 -36 417 54 0 0 chr3 8528042 8528098 -218996480 + (CA)n Simple_repeat Simple_repeat 1 56 0 420 306 65 18 chr3 8529319 8529493 -218995085 - MIR SINE MIR -62 146 3 189 0 0 0 chr3 8530948 8530969 -218993609 + (CA)n Simple_repeat Simple_repeat 1 21 0 27 29 0 0 chr3 8531546 8531580 -218992998 + AT_rich Low_complexity Low_complexity 1 34 0 6479 48 0 0 chr3 8531580 8532400 -218992178 - L1PA5 LINE L1 -6 6148 5329 372 316 90 11 chr3 8533857 8534034 -218990544 - MIR SINE MIR -56 206 16 1227 217 126 7 chr3 8534247 8534556 -218990022 - MSTD LTR MaLR -50 346 1 723 251 108 35 chr3 8534925 8535267 -218989311 + MER110A LTR ERV1 40 406 -62 23595 134 52 50 chr3 8535305 8540161 -218984417 - L1P LINE L1 -1268 4878 12 1083 146 25 33 chr3 8540297 8540537 -218984041 - THE1C LTR MaLR -2 373 136 29333 132 17 55 chr3 8540537 8546520 -218978058 - L1P3 LINE L1 -401 5753 13 9280 142 24 27 chr3 8546516 8548052 -218976526 - THE1C-int LTR MaLR -51 1684 1 * 1697 160 26 50 chr3 8548054 8548436 -218976142 - THE1C LTR MaLR -2 373 1 495 0 0 0 chr3 8548692 8548747 -218975831 + (CA)n Simple_repeat Simple_repeat 2 56 0 21 0 0 0 chr3 8548809 8548830 -218975748 + AT_rich Low_complexity Low_complexity 1 21 0 1018 253 0 0 chr3 8549044 8549265 -218975313 + MER58A DNA MER1_type 1 221 -3 238 243 157 0 chr3 8549278 8549369 -218975209 + MER5A DNA MER1_type 4 112 -77 276 250 11 11 chr3 8551367 8551455 -218973123 + MLT1J1 LTR MaLR 341 428 -18 191 188 83 0 chr3 8551793 8551841 -218972737 + L2 LINE L2 3221 3272 0 208 254 0 70 chr3 8552750 8552821 -218971757 + MIR SINE MIR 197 262 0 635 318 102 27 chr3 8553207 8553751 -218970827 - L2 LINE L2 0 3313 2730 517 304 44 0 chr3 8554700 8554881 -218969697 - MER5A DNA MER1_type 0 189 1 1848 263 33 44 chr3 8555802 8555855 -218968723 + L1MA8 LINE L1 466 518 -6971 180 0 0 0 chr3 8555855 8555875 -218968703 + (CA)n Simple_repeat Simple_repeat 1 20 0 1848 263 33 44 chr3 8555875 8556423 -218968155 + L1MA8 LINE L1 518 2068 -5421 1856 244 31 30 chr3 8556477 8557254 -218967324 + L1MA8 LINE L1 2018 2763 -4802 * 2840 208 48 37 chr3 8557246 8557435 -218967143 + L1MA8 LINE L1 3636 3821 -3744 2621 163 45 60 chr3 8557435 8558056 -218966522 + LTR9 LTR ERV1 1 612 0 2840 208 48 37 chr3 8558056 8558696 -218965882 + L1MA8 LINE L1 3821 4474 -3091 3320 174 17 8 chr3 8558699 8559298 -218965280 - MER50 LTR ERV1 -20 714 111 960 187 38 8 chr3 8559309 8559571 -218965007 - L1 LINE L1 -2813 3333 3064 317 238 0 40 chr3 8559572 8559673 -218964905 + MER50 LTR ERV1 1 97 -637 10123 173 24 27 chr3 8559682 8562747 -218961831 + L1MA8 LINE L1 4657 7709 -1 268 219 0 184 chr3 8562860 8562974 -218961604 + MER63 DNA MER1_type 2 720 -342 617 234 83 5 chr3 8563036 8563228 -218961350 + MER63 DNA MER1_type 836 1042 -18 912 306 62 12 chr3 8563228 8563646 -218960932 - LTR16B LTR ERVL -23 441 3 1955 185 55 47 chr3 8563906 8564328 -218960250 - MSTB LTR MaLR 0 426 2 938 279 20 8 chr3 8564922 8565173 -218959405 + MIR SINE MIR 1 254 -8 273 57 0 0 chr3 8565174 8565209 -218959369 + (CAT)n Simple_repeat Simple_repeat 1 35 0 222 329 24 24 chr3 8566472 8566554 -218958024 + MIR SINE MIR 11 92 -170 246 216 196 41 chr3 8567141 8567238 -218957340 - MLT1K LTR MaLR -326 262 151 23 0 0 0 chr3 8567992 8568015 -218956563 + AT_rich Low_complexity Low_complexity 1 23 0 240 344 96 24 chr3 8569329 8569454 -218955124 + MER5A DNA MER1_type 34 167 -22 494 299 123 25 chr3 8570140 8570668 -218953910 + HAL1 LINE L1 735 1314 -1193 1139 292 73 41 chr3 8570847 8571669 -218952909 + HAL1 LINE L1 1627 2474 -33 2289 214 49 43 chr3 8572278 8572833 -218951745 - MER74A LTR ERVL 0 558 1 288 303 115 8 chr3 8573304 8573426 -218951152 - MER117 DNA MER1_type -29 168 34 249 336 79 58 chr3 8573474 8573715 -218950863 - L2 LINE L2 -202 3070 2825 371 240 41 18 chr3 8573724 8573895 -218950683 + (TA)n Simple_repeat Simple_repeat 1 175 0 27 73 0 0 chr3 8573900 8573955 -218950623 + AT_rich Low_complexity Low_complexity 1 55 0 566 289 27 0 chr3 8574008 8574157 -218950421 - MIR SINE MIR -108 154 2 350 300 64 27 chr3 8575478 8575588 -218948990 + L2 LINE L2 3139 3252 -20 200 182 0 0 chr3 8575806 8575839 -218948739 + (CAAAG)n Simple_repeat Simple_repeat 4 36 0 386 167 77 13 chr3 8576047 8576125 -218948453 - LTR54 LTR ERV1 -427 83 1 658 235 109 53 chr3 8576363 8576418 -218948160 + MER5C DNA MER1_type 6 56 -268 5393 48 31 3 chr3 8576418 8577119 -218947459 + LTR30 LTR ERV1 1 721 -1 658 235 109 53 chr3 8577119 8577365 -218947213 + MER5C DNA MER1_type 56 324 0 248 0 31 0 chr3 8577417 8577449 -218947129 + (TTTA)n Simple_repeat Simple_repeat 2 34 0 2100 79 0 0 chr3 8577785 8578092 -218946486 - AluY SINE Alu 0 307 1 265 341 53 8 chr3 8578389 8578521 -218946057 - MIR SINE MIR -6 256 119 25 65 0 0 chr3 8578774 8578820 -218945758 + AT_rich Low_complexity Low_complexity 1 46 0 595 213 0 31 chr3 8578820 8578947 -218945631 - AluJb SINE Alu -189 123 1 964 246 5 5 chr3 8578949 8579160 -218945418 - MER58A DNA MER1_type -10 214 4 1295 153 60 0 chr3 8581079 8581294 -218943284 + MER30 DNA MER1_type 3 230 0 287 395 0 0 chr3 8581308 8581442 -218943136 + MIR SINE MIR 31 164 -98 246 243 90 54 chr3 8581941 8582052 -218942526 - MLT1J2 LTR MaLR -302 148 34 761 163 0 0 chr3 8582101 8582224 -218942354 + FLAM_C SINE Alu 1 123 -20 903 229 25 4 chr3 8583055 8583295 -218941283 - L1MA4 LINE L1 -5 6295 6051 198 338 38 0 chr3 8583351 8583431 -218941147 + L2 LINE L2 3231 3313 0 709 260 105 47 chr3 8583545 8583841 -218940737 - MLT1I LTR MaLR -95 314 2 242 262 0 39 chr3 8584503 8584606 -218939972 + CT-rich Low_complexity Low_complexity 3 101 0 188 282 39 64 chr3 8584646 8584724 -218939854 - L2 LINE L2 -19 3294 3219 280 336 69 30 chr3 8585249 8585380 -218939198 - L2 LINE L2 0 3272 3137 1454 141 0 4 chr3 8585595 8585836 -218938742 - L1MA4 LINE L1 -5 6295 6056 1018 276 22 63 chr3 8585939 8586065 -218938513 - L1ME3A LINE L1 -5 6165 6035 2311 41 7 3 chr3 8586065 8586357 -218938221 + AluY SINE Alu 1 293 -18 1018 276 22 63 chr3 8586357 8586675 -218937903 - L1ME3A LINE L1 -135 6035 5739 368 232 108 77 chr3 8586707 8586966 -218937612 - MER113 DNA MER1_type? -236 285 19 283 306 194 11 chr3 8587444 8587528 -218937050 - MIR SINE MIR -18 244 177 1373 207 107 52 chr3 8587528 8588007 -218936571 + MLT1D LTR MaLR 1 505 0 283 306 194 11 chr3 8588007 8588108 -218936470 - MIR SINE MIR -85 177 25 488 264 54 86 chr3 8588319 8588633 -218935945 - MLT1K LTR MaLR -24 564 261 304 304 0 49 chr3 8589748 8589850 -218934728 - MIR3 SINE MIR -45 163 67 391 336 17 0 chr3 8589946 8590065 -218934513 + L2 LINE L2 3184 3304 -9 438 324 105 5 chr3 8591262 8591481 -218933097 + MIR SINE MIR 16 256 -6 295 309 9 45 chr3 8592149 8592259 -218932319 - L2 LINE L2 -5 3308 3203 * 694 290 42 9 chr3 8592238 8592455 -218932123 - MIR SINE MIR -2 260 37 209 336 112 14 chr3 8592715 8592858 -218931720 + MIR SINE MIR 100 256 -6 21 36 0 0 chr3 8594680 8594708 -218929870 + AT_rich Low_complexity Low_complexity 1 28 0 2605 39 0 3 chr3 8594800 8595105 -218929473 + AluY SINE Alu 1 304 -7 327 49 0 0 chr3 8595597 8595638 -218928940 + (TG)n Simple_repeat Simple_repeat 2 42 0 1071 207 9 26 chr3 8596272 8596499 -218928079 + MER58A DNA MER1_type 1 223 -1 216 291 13 25 chr3 8596961 8597040 -218927538 + MIR3 SINE MIR 122 199 -9 818 201 4 107 chr3 8598205 8598449 -218926129 + MER20 DNA MER1_type 1 219 0 332 268 108 56 chr3 8599746 8599910 -218924668 - MIR3 SINE MIR -15 193 20 395 173 12 0 chr3 8599978 8600059 -218924519 + MER53 DNA DNA 101 182 -7 489 223 236 0 chr3 8600874 8601031 -218923547 + MIR SINE MIR 14 207 -55 2319 83 0 10 chr3 8601332 8601632 -218922946 + AluSc SINE Alu 1 297 -12 261 329 12 0 chr3 8601641 8601726 -218922852 + L2 LINE L2 3182 3267 -5 1041 256 78 43 chr3 8602853 8603224 -218921354 + MLT1I LTR MaLR 26 409 0 249 384 0 0 chr3 8603938 8604037 -218920541 + MIR SINE MIR 52 150 -112 191 349 39 29 chr3 8605300 8605410 -218919168 + MIR SINE MIR 16 127 -81 998 217 109 29 chr3 8605476 8605789 -218918789 - MER58B DNA MER1_type -3 338 1 398 284 71 13 chr3 8605819 8605974 -218918604 + MLT1J2 LTR MaLR 287 450 0 285 338 40 15 chr3 8606850 8607046 -218917532 + MIR SINE MIR 7 206 -56 272 155 14 0 chr3 8607173 8607244 -218917334 + CT-rich Low_complexity Low_complexity 1 72 0 375 73 0 0 chr3 8607248 8607303 -218917275 + (CA)n Simple_repeat Simple_repeat 2 56 0 2390 257 51 16 chr3 8608251 8609001 -218915577 + MER20B DNA MER1_type 8 783 0 425 367 87 31 chr3 8609257 8609546 -218915032 - L3 LINE CR1 -7 1570 1266 376 374 92 18 chr3 8610049 8610439 -218914139 + L2 LINE L2 2892 3310 -3 184 291 255 7 chr3 8610528 8610669 -218913909 - L3 LINE CR1 -330 1247 1072 7651 23 0 4 chr3 8610824 8611850 -218912728 - L1PA4 LINE L1 -2 6153 5128 234 333 0 0 chr3 8612454 8612520 -218912058 - MER117 DNA MER1_type -8 189 124 272 326 109 42 chr3 8613588 8613781 -218910797 - MIR SINE MIR -14 248 43 264 380 78 14 chr3 8614040 8614182 -218910396 - L2 LINE L2 -5 3267 3117 1027 81 5 38 chr3 8614735 8614741 -218909837 + (TTTC)n Simple_repeat Simple_repeat 1 185 0 1027 81 5 38 chr3 8614741 8614927 -218909651 + (TTTC)n Simple_repeat Simple_repeat 1 180 0 1909 164 10 6 chr3 8615334 8615645 -218908933 + AluSx SINE Alu 1 312 0 394 195 46 0 chr3 8615721 8615808 -218908770 - MLT1H LTR MaLR -1 548 458 687 282 29 31 chr3 8615885 8616169 -218908409 - MLT1H LTR MaLR -222 327 1 290 163 24 171 chr3 8617215 8617338 -218907240 - L2 LINE L2 -5 3308 3204 296 53 0 0 chr3 8617992 8618030 -218906548 + U3 snRNA snRNA 1 38 -179 537 308 51 40 chr3 8618205 8618458 -218906120 - MIR SINE MIR -5 257 2 225 179 0 89 chr3 8618523 8618579 -218905999 + MIR SINE MIR 103 153 -109 210 71 0 0 chr3 8618971 8618999 -218905579 + (TG)n Simple_repeat Simple_repeat 1 28 0 800 134 12 18 chr3 8619065 8619229 -218905349 + CT-rich Low_complexity Low_complexity 4 166 0 1544 169 19 8 chr3 8619233 8619493 -218905085 - AluJb SINE Alu -38 274 12 911 288 58 27 chr3 8619892 8620184 -218904394 + L3 LINE CR1 1166 1466 -111 566 335 162 34 chr3 8620445 8620511 -218904067 + L2 LINE L2 2054 2110 -1204 1847 187 12 0 chr3 8620511 8620854 -218903724 - MER7A DNA MER2_type -1 345 1 566 335 162 34 chr3 8620854 8621342 -218903236 + L2 LINE L2 2110 2679 -635 223 379 92 15 chr3 8621467 8621856 -218902722 + L2 LINE L2 2687 3142 -171 359 322 94 35 chr3 8622022 8622224 -218902354 + MIR SINE MIR 13 226 -36 349 294 22 0 chr3 8622396 8622488 -218902090 + L1M4 LINE L1 707 800 -5742 4986 227 81 53 chr3 8622887 8624537 -218900041 + L1MB7 LINE L1 -248 1447 -4833 731 250 66 19 chr3 8624561 8624796 -218899782 + L1MB7 LINE L1 1594 1813 -4571 4284 222 42 11 chr3 8624888 8625933 -218898645 + L1MB7 LINE L1 4387 5519 -901 2529 145 33 9 chr3 8625933 8626354 -218898224 - Tigger2a DNA MER2_type -3 431 1 4284 222 42 11 chr3 8626354 8627155 -218897423 + L1MB7 LINE L1 5519 6293 -127 572 270 104 26 chr3 8627592 8627822 -218896756 - MLT1L LTR MaLR 0 615 368 426 20 0 0 chr3 8627979 8628030 -218896548 + (TG)n Simple_repeat Simple_repeat 2 52 0 219 273 0 0 chr3 8629814 8629869 -218894709 + (TA)n Simple_repeat Simple_repeat 1 55 0 1476 211 19 14 chr3 8629931 8630296 -218894282 + L1MB8 LINE L1 5811 6177 -1 252 0 0 0 chr3 8631098 8631126 -218893452 + (T)n Simple_repeat Simple_repeat 1 28 0 331 332 109 31 chr3 8631145 8631338 -218893240 - MER102b DNA MER1_type -6 335 128 234 311 133 0 chr3 8632010 8632100 -218892478 - MIR3 SINE MIR -93 115 14 3800 117 21 54 chr3 8635604 8636305 -218888273 + L1MA5A LINE L1 5619 6296 -1 4443 80 173 49 chr3 8636474 8637209 -218887369 - LTR12 LTR ERV1 0 826 1 442 0 0 33 chr3 8637380 8637440 -218887138 + (TA)n Simple_repeat Simple_repeat 2 59 0 1614 196 0 16 chr3 8637728 8638040 -218886538 + AluJo SINE Alu 1 307 -5 602 131 0 0 chr3 8638191 8638275 -218886303 - LTR12 LTR ERV1 -151 563 480 313 297 17 0 chr3 8638275 8638393 -218886185 - LTR30 LTR ERV1 -79 643 524 850 57 205 0 chr3 8638393 8638515 -218886063 - LTR12 LTR ERV1 -456 258 112 329 299 18 18 chr3 8638515 8638719 -218885859 + (TA)n Simple_repeat Simple_repeat 1 204 0 4392 32 2 2 chr3 8638815 8639310 -218885268 - SVA Other Other -17 1369 875 575 255 134 89 chr3 8639321 8639574 -218885004 + L1MC5 LINE L1 6711 6951 -1010 360 0 0 0 chr3 8639574 8639614 -218884964 + (TG)n Simple_repeat Simple_repeat 1 40 0 575 255 134 89 chr3 8639614 8639866 -218884712 + L1MC5 LINE L1 6951 7239 -722 2366 172 73 36 chr3 8639914 8640501 -218884077 - L1MB7 LINE L1 -20 6164 5556 741 241 42 31 chr3 8640489 8640750 -218883828 + L1MC5 LINE L1 7268 7531 -430 * 1648 141 84 0 chr3 8640755 8640944 -218883634 - AluSx SINE Alu 0 333 110 216 0 0 0 chr3 8640944 8640968 -218883610 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 1648 141 84 0 chr3 8640968 8641089 -218883489 - AluSx SINE Alu -223 110 1 2644 153 47 10 chr3 8641404 8641889 -218882689 - L1MC1 LINE L1 -9 6324 5822 23 33 0 0 chr3 8642143 8642173 -218882405 + AT_rich Low_complexity Low_complexity 1 30 0 276 316 153 20 chr3 8642940 8643241 -218881337 + MLT1H LTR MaLR 22 362 -187 249 229 0 0 chr3 8643289 8643337 -218881241 + MLT1H LTR MaLR 501 548 -1 253 369 34 45 chr3 8643359 8643535 -218881043 + L2 LINE L2 2931 3104 -168 210 215 141 89 chr3 8643667 8643802 -218880776 + MIR SINE MIR 121 262 0 895 225 63 106 chr3 8643859 8644380 -218880198 - L1MC5 LINE L1 -838 7123 6625 3712 180 12 8 chr3 8644381 8645114 -218879464 - L1MA8 LINE L1 -3 6288 5553 1085 207 152 30 chr3 8645479 8645953 -218878625 - L1MC5 LINE L1 -302 7659 7128 266 167 167 67 chr3 8645978 8646068 -218878510 + L1MC5 LINE L1 6930 7028 -933 182 307 132 44 chr3 8646299 8646413 -218878165 + L2 LINE L2 3172 3295 -18 252 130 0 0 chr3 8647253 8647299 -218877279 + (TATG)n Simple_repeat Simple_repeat 1 46 0 293 306 131 45 chr3 8649124 8649323 -218875255 + MIR SINE MIR 2 217 -45 295 150 340 0 chr3 8649890 8649990 -218874588 + MER103 DNA DNA 18 151 -15 513 267 22 15 chr3 8650010 8650145 -218874433 - MIR SINE MIR -5 257 122 306 68 0 0 chr3 8651300 8651344 -218873234 - L1PA8 LINE L1 -4 6168 6125 306 167 22 11 chr3 8652208 8652298 -218872280 + (TA)n Simple_repeat Simple_repeat 2 92 0 3598 181 16 68 chr3 8654105 8654954 -218869624 + Tigger6a DNA MER2_type 1 805 -278 3374 191 37 4 chr3 8654970 8655678 -218868900 - L1MD1 LINE L1 -7 6629 5899 3027 254 24 41 chr3 8655685 8656340 -218868238 - L1MD1 LINE L1 -1602 4938 4312 5445 18 0 2 chr3 8656340 8656963 -218867615 - L1PA3 LINE L1 0 6155 5534 3027 254 24 41 chr3 8656963 8657545 -218867033 - L1MD1 LINE L1 -2228 4312 3722 * 5805 218 63 31 chr3 8657540 8659758 -218864820 - L1MD1 LINE L1 -4009 2531 18 1065 177 55 19 chr3 8659761 8660032 -218864546 + Tigger6a DNA MER2_type 803 1083 0 196 368 58 0 chr3 8660115 8660202 -218864376 - L2 LINE L2 -33 3280 3189 286 321 18 0 chr3 8660462 8660571 -218864007 - MIR SINE MIR -58 204 94 362 365 207 22 chr3 8660965 8661327 -218863251 + L2 LINE L2 2836 3264 -8 373 288 54 9 chr3 8662896 8663007 -218861571 + L2 LINE L2 3193 3308 -5 206 62 31 0 chr3 8663010 8663042 -218861536 + (TGGA)n Simple_repeat Simple_repeat 4 36 0 299 318 80 66 chr3 8663325 8663674 -218860904 + L3 LINE CR1 1199 1552 -25 300 91 0 0 chr3 8664137 8664181 -218860397 + (TC)n Simple_repeat Simple_repeat 1 44 0 243 306 0 14 chr3 8664181 8664253 -218860325 + MIR SINE MIR 189 259 -3 299 322 43 9 chr3 8665160 8665275 -218859303 + MIR3 SINE MIR 82 200 -8 225 94 0 0 chr3 8666608 8666640 -218857938 + (TTTA)n Simple_repeat Simple_repeat 1 32 0 432 151 226 0 chr3 8666640 8666746 -218857832 - L1MB4 LINE L1 -95 6085 5956 192 443 0 0 chr3 8666912 8667000 -218857578 + L2 LINE L2 3162 3249 -23 24 0 0 0 chr3 8668179 8668203 -218856375 + AT_rich Low_complexity Low_complexity 1 24 0 216 267 0 0 chr3 8668570 8668615 -218855963 + MIR SINE MIR 29 73 -135 1586 241 28 19 chr3 8669540 8669972 -218854606 - MER110 LTR ERV1 -4 487 52 860 181 7 7 chr3 8670796 8670945 -218853633 - FRAM SINE Alu -30 146 1 539 282 6 28 chr3 8671889 8672070 -218852508 - MER5B DNA MER1_type -1 177 1 360 320 53 8 chr3 8672240 8672374 -218852204 - MIR SINE MIR -66 142 34 2050 139 53 11 chr3 8674055 8674415 -218850163 + THE1C LTR MaLR 1 375 0 203 387 43 0 chr3 8675726 8675819 -218848759 + MIR3 SINE MIR 63 159 -49 309 341 73 8 chr3 8675903 8676071 -218848507 - MIR SINE MIR -61 147 10 3327 110 47 4 chr3 8676438 8676928 -218847650 - MER9 LTR ERVK 0 511 1 680 314 65 14 chr3 8676935 8677225 -218847353 - MLT1K LTR MaLR -15 573 269 2208 123 16 21 chr3 8677961 8678334 -218846244 + THE1C LTR MaLR 1 371 -4 212 304 14 0 chr3 8678363 8678432 -218846146 - L2 LINE L2 -1 3271 3202 509 307 46 55 chr3 8679011 8679229 -218845349 - MIR SINE MIR -29 233 18 1650 193 24 24 chr3 8679666 8680075 -218844503 + L1MA10 LINE L1 5924 6332 -2 1857 86 0 0 chr3 8680107 8680365 -218844213 + AluY SINE Alu 50 307 0 1036 198 231 41 chr3 8680918 8681307 -218843271 + MLT2B1 LTR ERVL 6 534 -20 189 0 0 0 chr3 8681354 8681375 -218843203 + (TG)n Simple_repeat Simple_repeat 2 22 0 233 343 0 27 chr3 8682566 8682639 -218841939 + MIR SINE MIR 33 103 -105 180 0 0 0 chr3 8683208 8683228 -218841350 + (T)n Simple_repeat Simple_repeat 1 20 0 276 179 119 15 chr3 8683349 8683416 -218841162 + MLT1I LTR MaLR 336 409 0 230 282 0 137 chr3 8683739 8683863 -218840715 - MER5B DNA MER1_type -3 175 69 584 292 12 6 chr3 8683901 8684069 -218840509 + MIR SINE MIR 93 261 -1 187 270 43 61 chr3 8684174 8684289 -218840289 + L2 LINE L2 3184 3296 -17 4306 36 0 2 chr3 8684976 8685498 -218839080 - L1PA4 LINE L1 -6 6149 5629 10891 31 1 1 chr3 8685498 8686821 -218837757 + L1P LINE L1 4035 5358 -788 540 226 123 7 chr3 8687170 8687316 -218837262 - MER58B DNA MER1_type -4 337 175 25 31 0 0 chr3 8687925 8687957 -218836621 + AT_rich Low_complexity Low_complexity 1 32 0 366 226 0 43 chr3 8688106 8688199 -218836379 - L1MC4 LINE L1 -1340 6702 6614 530 303 142 43 chr3 8689876 8690597 -218833981 - L2 LINE L2 -111 3202 2360 675 296 186 31 chr3 8691422 8691841 -218832737 - MLT1G1 LTR MaLR -36 559 76 1629 148 21 4 chr3 8691914 8692328 -218832250 + L1PA16 LINE L1 5117 5539 -627 1793 133 81 27 chr3 8692328 8692660 -218831918 + L1PA16 LINE L1 5807 6156 -10 269 377 15 8 chr3 8693723 8693853 -218830725 + L2 LINE L2 2238 2368 -946 1027 277 65 34 chr3 8693888 8694332 -218830246 + MLT1C LTR MaLR 10 467 0 451 355 77 31 chr3 8694386 8694738 -218829840 + L2 LINE L2 2480 2847 -467 4988 204 43 19 chr3 8694741 8696741 -218827837 - L1MC2 LINE L1 -10 6334 4295 610 162 8 0 chr3 8696845 8696962 -218827616 - L1MB3 LINE L1 -19 6164 6047 2573 52 0 0 chr3 8696963 8697272 -218827306 - AluY SINE Alu -2 309 1 2027 182 84 25 chr3 8697281 8697759 -218826819 - L1MB3 LINE L1 -1 6182 5677 188 314 20 0 chr3 8698135 8698186 -218826392 + L2 LINE L2 2541 2592 -722 554 154 103 45 chr3 8698356 8698462 -218826116 - L1MCb LINE L1 -4103 2461 2342 1002 211 63 89 chr3 8698462 8698845 -218825733 + MLT1A2 LTR MaLR 1 373 -1 554 154 103 45 chr3 8698845 8698894 -218825684 - L1MCb LINE L1 -4222 2342 2297 5164 179 31 10 chr3 8698904 8700227 -218824351 - L1PA16 LINE L1 0 6166 4810 2307 155 22 89 chr3 8700229 8700821 -218823757 + L1PA16 LINE L1 4265 4816 -1330 * 2832 216 101 56 chr3 8700811 8701001 -218823577 - L1MCb LINE L1 -4260 2304 2124 1860 136 25 0 chr3 8701001 8701309 -218823269 + AluSq SINE Alu 1 315 0 2832 216 101 56 chr3 8701309 8701543 -218823035 - L1MCb LINE L1 -4440 2124 1902 637 54 0 21 chr3 8701543 8701636 -218822942 - L1PA8 LINE L1 0 6172 6082 2832 216 101 56 chr3 8701636 8703337 -218821241 - L1MCb LINE L1 -4662 1902 3 223 345 0 62 chr3 8703390 8703478 -218821100 + L2 LINE L2 2868 2949 -364 3199 138 53 0 chr3 8703478 8704029 -218820549 + LTR19B LTR ERV1 1 580 0 223 345 0 62 chr3 8704029 8704053 -218820525 + L2 LINE L2 2949 2973 -340 184 295 156 8 chr3 8704168 8704290 -218820288 + L2 LINE L2 3144 3283 -30 27 29 0 0 chr3 8705846 8705880 -218818698 + AT_rich Low_complexity Low_complexity 1 34 0 195 129 0 0 chr3 8706400 8706431 -218818147 + (CATA)n Simple_repeat Simple_repeat 4 34 0 1635 57 0 0 chr3 8706503 8706696 -218817882 + AluY SINE Alu 110 302 -9 1057 224 23 0 chr3 8707017 8707236 -218817342 - MER58A DNA MER1_type 0 224 1 638 214 53 78 chr3 8707246 8707452 -218817126 - MER3 DNA MER1_type -1 208 8 281 224 0 53 chr3 8707660 8707736 -218816842 + MIR SINE MIR 112 183 -79 470 362 25 5 chr3 8707836 8708035 -218816543 + MIR SINE MIR 42 244 -18 21 0 0 0 chr3 8708150 8708171 -218816407 + AT_rich Low_complexity Low_complexity 1 21 0 270 267 22 44 chr3 8708634 8708724 -218815854 + MER81 DNA DNA 27 114 0 1552 175 22 56 chr3 8708889 8709209 -218815369 + AluJo SINE Alu 1 309 -3 268 163 82 0 chr3 8709647 8709696 -218814882 - MER5B DNA MER1_type -3 175 123 2575 102 66 31 chr3 8709704 8709871 -218814707 + L1PA10 LINE L1 5730 5890 -278 2243 114 0 3 chr3 8709871 8710177 -218814401 + AluSg SINE Alu 1 305 -5 2575 102 66 31 chr3 8710177 8710432 -218814146 + L1PA10 LINE L1 5890 6167 -1 331 357 16 8 chr3 8710514 8710643 -218813935 - MER5B DNA MER1_type -48 130 1 264 30 0 0 chr3 8710675 8710708 -218813870 + (CA)n Simple_repeat Simple_repeat 1 33 0 226 275 116 0 chr3 8710716 8710785 -218813793 + MIR SINE MIR 39 115 -93 1837 151 48 12 chr3 8712276 8712607 -218811971 + MER2 DNA MER2_type 2 344 0 543 194 73 0 chr3 8714867 8714991 -218809587 - L1MA9 LINE L1 0 6312 6180 2293 102 0 0 chr3 8715017 8715320 -218809258 + AluSc SINE Alu 1 303 -6 263 317 41 8 chr3 8715348 8715471 -218809107 + MIR SINE MIR 136 262 0 2123 70 0 3 chr3 8716336 8716623 -218807955 - L1PA5 LINE L1 0 6154 5869 576 221 8 31 chr3 8717809 8717936 -218806642 + MER21B LTR ERV1 343 466 -397 29 28 0 0 chr3 8718486 8718522 -218806056 + AT_rich Low_complexity Low_complexity 1 36 0 2399 253 42 39 chr3 8719712 8721544 -218803034 + L1MCc LINE L1 807 2906 -4035 2240 98 3 0 chr3 8721544 8721849 -218802729 - AluSp SINE Alu -5 308 3 2399 253 42 39 chr3 8721849 8722885 -218801693 + L1MCc LINE L1 2906 3937 -3004 2264 97 20 0 chr3 8722891 8723189 -218801389 + AluSx SINE Alu 3 306 -6 3486 159 65 11 chr3 8723191 8723853 -218800725 + L1MC1 LINE L1 5635 6332 -1 374 341 33 76 chr3 8723887 8724007 -218800571 + L2 LINE L2 2876 2985 -328 2560 45 0 3 chr3 8724007 8724316 -218800262 - AluY SINE Alu -3 308 1 374 341 33 76 chr3 8724316 8724406 -218800172 + L2 LINE L2 2985 3077 -236 23 0 0 0 chr3 8724539 8724562 -218800016 + AT_rich Low_complexity Low_complexity 1 23 0 186 43 0 0 chr3 8724563 8724586 -218799992 + (T)n Simple_repeat Simple_repeat 1 23 0 801 192 7 0 chr3 8724592 8724738 -218799840 + L1ME2 LINE L1 5452 5598 -735 647 165 0 0 chr3 8724750 8724871 -218799707 - L1MC/D LINE L1 -2542 5453 5333 369 262 197 35 chr3 8726056 8726514 -218798064 - MLT1H1 LTR MaLR -6 588 1 22 0 0 0 chr3 8726861 8726883 -218797695 + AT_rich Low_complexity Low_complexity 1 22 0 1901 64 0 49 chr3 8726935 8727199 -218797379 - AluY SINE Alu -13 298 48 515 253 123 30 chr3 8727370 8727639 -218796939 + MER46C DNA MER2_type 1 294 -44 243 227 149 58 chr3 8727671 8727825 -218796753 - MIR SINE MIR 0 262 95 26 0 0 0 chr3 8729136 8729162 -218795416 + AT_rich Low_complexity Low_complexity 1 26 0 3535 225 45 24 chr3 8729774 8730680 -218793898 - MER45B DNA AcHobo -27 1013 89 430 314 31 63 chr3 8732336 8732559 -218792019 - MIR SINE MIR -31 231 16 270 253 21 84 chr3 8733327 8733422 -218791156 - L2 LINE L2 -2 3311 3223 773 204 25 6 chr3 8733461 8733618 -218790960 + MER97c DNA MER1_type? 20 179 -911 976 261 65 36 chr3 8733656 8734104 -218790474 + L1ME2 LINE L1 5685 6145 -19 438 108 0 0 chr3 8734362 8734427 -218790151 + (TAGA)n Simple_repeat Simple_repeat 2 66 0 2350 105 0 0 chr3 8734590 8734895 -218789683 - AluSc SINE Alu -4 305 1 180 0 0 0 chr3 8735622 8735642 -218788936 + (A)n Simple_repeat Simple_repeat 1 20 0 2277 90 3 3 chr3 8735733 8736033 -218788545 - AluSx SINE Alu -2 310 11 22 35 0 0 chr3 8736301 8736330 -218788248 + AT_rich Low_complexity Low_complexity 1 29 0 1593 213 101 0 chr3 8736457 8736823 -218787755 + MLT1A1-int LTR MaLR 1333 1735 0 233 212 197 0 chr3 8736823 8736889 -218787689 + MLT1A1 LTR MaLR 1 79 -295 340 309 0 0 chr3 8736929 8737026 -218787552 + MLT1A1 LTR MaLR 60 156 -218 756 184 21 154 chr3 8737057 8737291 -218787287 + MLT1A1 LTR MaLR 162 365 0 407 335 6 29 chr3 8737335 8737505 -218787073 - MER5A DNA MER1_type -23 166 1 442 327 17 14 chr3 8737556 8737742 -218786836 + MIR SINE MIR 25 209 -53 293 331 182 7 chr3 8737914 8738068 -218786510 - MIR SINE MIR -15 247 67 528 284 91 33 chr3 8739174 8739417 -218785161 - MIR SINE MIR -4 258 2 210 274 19 57 chr3 8740112 8740218 -218784360 - MIR SINE MIR -54 208 107 216 224 17 17 chr3 8740744 8740802 -218783776 + CT-rich Low_complexity Low_complexity 2 59 0 1654 142 54 85 chr3 8741067 8741454 -218783124 - THE1C LTR MaLR 0 375 1 1926 175 0 0 chr3 8741850 8742158 -218782420 - AluSx SINE Alu -4 308 1 2201 105 0 32 chr3 8742578 8742893 -218781685 + AluSg1 SINE Alu 1 305 -4 1488 214 61 12 chr3 8743937 8744279 -218780299 + MLT1A1 LTR MaLR 1 359 -6 679 273 16 0 chr3 8744840 8745023 -218779555 + MER58A DNA MER1_type 1 186 -38 774 201 17 6 chr3 8745038 8745217 -218779361 - L1MD1 LINE L1 -8 6234 6054 2657 188 35 25 chr3 8745228 8745320 -218779258 - L1MD1 LINE L1 -252 5990 5900 2412 123 17 3 chr3 8745320 8745679 -218778899 + THE1B LTR MaLR 1 364 0 2657 188 35 25 chr3 8745679 8746252 -218778326 - L1MD1 LINE L1 -342 5900 5319 1905 178 73 8 chr3 8746451 8746821 -218777757 + MSTD LTR MaLR 1 394 -2 4989 262 68 38 chr3 8746823 8748508 -218776070 + MSTD-int LTR MaLR 1 1735 0 1863 176 92 0 chr3 8748508 8748867 -218775711 + MSTD LTR MaLR 1 392 -4 22 56 0 0 chr3 8749210 8749246 -218775332 + AT_rich Low_complexity Low_complexity 1 36 0 461 281 103 50 chr3 8749944 8750186 -218774392 + MIR SINE MIR 5 259 -3 343 152 38 13 chr3 8750370 8750449 -218774129 + LTR56 LTR ERV1 349 429 -16 264 154 0 0 chr3 8751291 8751343 -218773235 + (TG)n Simple_repeat Simple_repeat 1 52 0 316 360 71 22 chr3 8751370 8751595 -218772983 - L3 LINE CR1 -159 1418 1183 425 314 41 41 chr3 8751751 8751971 -218772607 - MIR SINE MIR -37 225 6 327 49 0 0 chr3 8752412 8752453 -218772125 + (CA)n Simple_repeat Simple_repeat 2 42 0 185 0 40 0 chr3 8752521 8752546 -218772032 + (TTA)n Simple_repeat Simple_repeat 2 27 0 674 198 152 5 chr3 8752546 8752743 -218771835 - MER5C DNA MER1_type -47 277 52 1744 186 3 0 chr3 8753049 8753345 -218771233 - AluJo SINE Alu -11 301 5 301 268 86 86 chr3 8753794 8754003 -218770575 - L1ME3A LINE L1 -283 5887 5679 299 292 64 21 chr3 8754116 8754349 -218770229 - L1ME3A LINE L1 -651 5513 5271 325 284 35 103 chr3 8755878 8756110 -218768468 - L3 LINE CR1 -518 1059 844 189 363 55 11 chr3 8756273 8756364 -218768214 - L3 LINE CR1 -11 1566 1472 198 264 114 36 chr3 8756450 8756590 -218767988 + MIR SINE MIR 46 196 -66 2024 108 0 81 chr3 8756820 8757154 -218767424 + AluSx SINE Alu 1 307 -5 407 250 167 14 chr3 8757669 8757813 -218766765 + MER5A DNA MER1_type 4 169 -20 200 375 0 0 chr3 8757839 8757911 -218766667 - MER5B DNA MER1_type -60 118 47 290 388 50 0 chr3 8758765 8758925 -218765653 - MIR3 SINE MIR -1 207 40 210 356 46 11 chr3 8758932 8759019 -218765559 + L2 LINE L2 2443 2532 -782 350 235 118 78 chr3 8759051 8759255 -218765323 + L2 LINE L2 2833 3044 -228 414 200 12 0 chr3 8759395 8759480 -218765098 + MER94 DNA DNA 1 86 -48 836 144 51 20 chr3 8759711 8759906 -218764672 + L1MA5 LINE L1 6100 6300 0 48 18 0 0 chr3 8759909 8759964 -218764614 + AT_rich Low_complexity Low_complexity 1 55 0 279 230 23 46 chr3 8760660 8760747 -218763831 + MER112 DNA MER1_type 1 85 -175 189 250 0 0 chr3 8760749 8760809 -218763769 + (CATA)n Simple_repeat Simple_repeat 1 60 0 192 355 47 12 chr3 8761002 8761174 -218763404 - L2 LINE L2 -1108 2206 2029 225 287 126 35 chr3 8761245 8761332 -218763246 + L2 LINE L2 3193 3287 -26 1827 223 122 56 chr3 8761535 8762270 -218762308 + LTR50 LTR ERVL 10 793 -2 4350 86 12 80 chr3 8762443 8763093 -218761485 + L1PB1 LINE L1 5193 5776 -375 189 0 0 0 chr3 8763093 8763114 -218761464 + (CA)n Simple_repeat Simple_repeat 1 21 0 4350 86 12 80 chr3 8763114 8763312 -218761266 + L1PB1 LINE L1 5776 5986 -165 753 293 26 7 chr3 8763320 8763627 -218760951 + L1M4 LINE L1 2272 2584 -3562 5023 144 17 5 chr3 8763680 8764674 -218759904 + L1PA16 LINE L1 5128 6133 -33 3262 138 24 29 chr3 8764814 8765403 -218759175 - LTR60 LTR ERV1 0 586 1 248 184 126 0 chr3 8765465 8765568 -218759010 + HAL1b LINE L1 746 861 -487 2693 16 3 3 chr3 8765797 8766102 -218758476 + AluY SINE Alu 1 305 -6 445 253 123 0 chr3 8766208 8766362 -218758216 + MLT1F1 LTR MaLR 9 181 -386 3080 101 41 0 chr3 8766420 8766855 -218757723 + MLT2A2 LTR ERVL 1 453 0 1116 159 19 9 chr3 8766855 8767069 -218757509 - Tigger1 DNA MER2_type -9 2409 2194 295 296 0 0 chr3 8767109 8767207 -218757371 + L1M4 LINE L1 2592 2689 -3457 462 258 85 25 chr3 8767222 8767657 -218756921 - L1MEc LINE L1 -3923 2473 2013 409 233 85 51 chr3 8767809 8767985 -218756593 - MLT1K LTR MaLR -34 554 373 24 0 0 0 chr3 8768007 8768031 -218756547 + AT_rich Low_complexity Low_complexity 1 24 0 1916 201 25 81 chr3 8768035 8768606 -218755972 - LTR8 LTR ERV1 0 691 153 5132 132 24 5 chr3 8768628 8769818 -218754760 - L1PA16 LINE L1 -11 6155 4981 1683 112 73 0 chr3 8769819 8770105 -218754473 - LTR49 LTR ERV1 -288 307 1 343 250 85 51 chr3 8770387 8770563 -218754015 + MLT1K LTR MaLR 373 554 -34 319 243 29 10 chr3 8772415 8772518 -218752060 + MER103 DNA DNA 55 159 -7 291 316 51 0 chr3 8773213 8773292 -218751286 + MIR SINE MIR 44 126 -82 351 231 51 0 chr3 8773543 8773621 -218750957 - MIR SINE MIR -16 246 165 210 278 122 11 chr3 8774167 8774257 -218750321 - L2 LINE L2 -35 3237 3138 12042 151 35 14 chr3 8774395 8776597 -218747981 + Tigger4(Zombi) DNA MER2_type 1 2248 -483 41771 35 9 3 chr3 8776597 8782712 -218741866 - L1PA3 LINE L1 -5 6150 7 2525 115 33 102 chr3 8782712 8783259 -218741319 + Tigger4(Zombi) DNA MER2_type 2222 2730 -1 331 348 11 50 chr3 8783352 8783548 -218741030 + MIR SINE MIR 1 191 -17 204 125 0 0 chr3 8784305 8784337 -218740241 + (CAA)n Simple_repeat Simple_repeat 2 33 0 1726 217 24 78 chr3 8784657 8785192 -218739386 - MLT2B3 LTR ERVL -48 506 1 1293 158 74 74 chr3 8785402 8785700 -218738878 + AluJb SINE Alu 1 298 -14 2467 86 0 0 chr3 8785792 8786094 -218738484 + AluY SINE Alu 1 302 -9 545 194 37 0 chr3 8786611 8786719 -218737859 - MLT2B3 LTR ERVL -72 482 371 341 82 0 0 chr3 8786791 8786840 -218737738 - MLT2B1 LTR ERVL 0 520 472 207 266 16 16 chr3 8786850 8786914 -218737664 + L2 LINE L2 3246 3309 -4 236 309 53 63 chr3 8787594 8787801 -218736777 - L2 LINE L2 0 3313 3109 362 331 105 6 chr3 8787834 8788015 -218736563 - L2 LINE L2 -358 2956 2758 2550 293 103 115 chr3 8788025 8789131 -218735447 - L2 LINE L2 -840 2474 1356 708 218 51 60 chr3 8789131 8789347 -218735231 - MER58A DNA MER1_type -1 223 10 2550 293 103 115 chr3 8789347 8789389 -218735189 - L2 LINE L2 -1958 1356 1315 1590 213 45 8 chr3 8789389 8789741 -218734837 + MLT1A1 LTR MaLR 1 365 0 2550 293 103 115 chr3 8789741 8790853 -218733725 - L2 LINE L2 -1999 1315 28 301 286 0 0 chr3 8791487 8791571 -218733007 + MER94 DNA DNA 5 88 -46 1139 343 40 17 chr3 8792631 8793205 -218731373 + L1PA16 LINE L1 788 1374 -6200 277 246 127 18 chr3 8793261 8793371 -218731207 + L1PA16 LINE L1 2176 2297 -5277 260 346 0 0 chr3 8793350 8793428 -218731150 + L1PA16 LINE L1 2104 2181 -5400 * 13260 232 29 16 chr3 8794087 8799428 -218725150 + L1PA16 LINE L1 2225 7602 -2 719 296 83 53 chr3 8799525 8799900 -218724678 + MLT1I LTR MaLR 4 389 -20 557 168 16 16 chr3 8799982 8800107 -218724471 + L1MA10 LINE L1 6209 6333 -1 279 0 0 0 chr3 8800471 8800502 -218724076 + (CA)n Simple_repeat Simple_repeat 2 32 0 1992 173 11 6 chr3 8800559 8800912 -218723666 - THE1A LTR MaLR 0 355 1 11089 103 17 2 chr3 8800912 8802468 -218722110 - THE1A-int LTR MaLR 0 1580 2 2184 138 23 6 chr3 8802469 8802818 -218721760 - THE1A LTR MaLR 0 355 1 264 370 55 0 chr3 8803118 8803264 -218721314 - MIR3 SINE MIR -1 207 54 266 215 15 31 chr3 8804431 8804496 -218720082 - L1PB4 LINE L1 -90 6066 6003 27 49 0 0 chr3 8804515 8804556 -218720022 + AT_rich Low_complexity Low_complexity 1 41 0 2427 62 0 10 chr3 8804924 8805233 -218719345 + AluY SINE Alu 1 306 -5 395 261 80 29 chr3 8805912 8806050 -218718528 - L1PB4 LINE L1 0 6156 6012 892 135 10 91 chr3 8806633 8806841 -218717737 - L1MA10 LINE L1 -2 6332 6142 4072 189 52 26 chr3 8806848 8808513 -218716065 - L1MB1 LINE L1 -135 6033 4316 221 130 43 58 chr3 8809158 8809227 -218715351 + (TATAG)n Simple_repeat Simple_repeat 3 70 0 28 29 0 0 chr3 8810450 8810485 -218714093 + AT_rich Low_complexity Low_complexity 1 35 0 196 29 29 29 chr3 8811378 8811412 -218713166 + (TTTTTG)n Simple_repeat Simple_repeat 2 35 0 186 43 0 0 chr3 8811960 8811983 -218712595 + (CAAAAA)n Simple_repeat Simple_repeat 2 24 0 21 0 0 0 chr3 8812018 8812039 -218712539 + AT_rich Low_complexity Low_complexity 1 21 0 24 85 0 0 chr3 8812140 8812199 -218712379 + AT_rich Low_complexity Low_complexity 1 59 0 263 125 42 52 chr3 8812241 8812337 -218712241 + (TTATA)n Simple_repeat Simple_repeat 5 99 0 222 374 53 15 chr3 8812404 8812535 -218712043 + MER5A DNA MER1_type 54 189 0 278 368 114 14 chr3 8812575 8812795 -218711783 + L2 LINE L2 2805 3046 -226 360 326 19 49 chr3 8812814 8813051 -218711527 - MIR SINE MIR 0 262 35 11470 203 55 25 chr3 8813072 8816612 -218707966 + L1PA16 LINE L1 806 4240 -2629 6925 61 26 1 chr3 8816612 8817487 -218707091 - MER11D LTR ERVK 0 897 1 11470 203 55 25 chr3 8817487 8818006 -218706572 + L1PA16 LINE L1 4240 4742 -2127 234 0 0 0 chr3 8818006 8818032 -218706546 + (CA)n Simple_repeat Simple_repeat 1 26 0 11470 203 55 25 chr3 8818032 8819780 -218704798 + L1PA16 LINE L1 4742 6860 -9 21 0 0 0 chr3 8819784 8819805 -218704773 + AT_rich Low_complexity Low_complexity 1 21 0 372 322 11 72 chr3 8821305 8821485 -218703093 + MIR SINE MIR 23 191 -71 254 203 0 38 chr3 8821588 8821667 -218702911 + (CATATA)n Simple_repeat Simple_repeat 2 77 0 1589 237 68 45 chr3 8821823 8822592 -218701986 + Charlie7 DNA MER1_type 1723 2508 -104 1750 211 35 28 chr3 8822836 8823295 -218701283 - MLT1C LTR MaLR 0 467 6 506 241 165 24 chr3 8825484 8825696 -218698882 + MIR SINE MIR 21 262 0 1894 128 10 7 chr3 8825809 8826105 -218698473 - AluSp SINE Alu -16 297 1 21 0 0 0 chr3 8826211 8826232 -218698346 + AT_rich Low_complexity Low_complexity 1 21 0 204 243 0 0 chr3 8826289 8826363 -218698215 + (TATATG)n Simple_repeat Simple_repeat 4 77 0 483 328 102 11 chr3 8827176 8827353 -218697225 + MIR SINE MIR 6 198 -64 4205 45 0 0 chr3 8827470 8828000 -218696578 - L1P LINE L1 -2438 3708 3179 2909 23 0 0 chr3 8827993 8828337 -218696241 + L1P LINE L1 3708 4051 -2095 * 228 65 0 0 chr3 8828331 8828362 -218696216 - L1P LINE L1 -2937 3209 3179 * 1253 21 0 0 chr3 8828359 8828504 -218696074 + L1PA3 LINE L1 3712 3856 -2290 11246 24 6 0 chr3 8828504 8830591 -218693987 + L1PA3 LINE L1 4061 6152 -3 21 0 0 0 chr3 8830591 8830612 -218693966 + AT_rich Low_complexity Low_complexity 1 21 0 292 327 63 25 chr3 8831042 8831201 -218693377 + MIR3 SINE MIR 35 199 -9 2011 118 6 43 chr3 8831311 8831633 -218692945 + AluSg SINE Alu 1 310 0 1939 194 24 5 chr3 8831657 8832034 -218692544 - MER44D DNA MER2_type -166 439 1 344 288 149 40 chr3 8832807 8833029 -218691549 - MIR SINE MIR -13 249 4 2318 64 0 10 chr3 8833216 8833511 -218691067 + AluY SINE Alu 1 292 -19 32 43 0 0 chr3 8834412 8834458 -218690120 + AT_rich Low_complexity Low_complexity 1 46 0 379 342 103 40 chr3 8835122 8835394 -218689184 - L3 LINE CR1 -17 1560 1272 192 308 202 30 chr3 8835904 8836102 -218688476 - L3 LINE CR1 -910 667 436 779 299 33 11 chr3 8836522 8836907 -218687671 + LTR16A LTR ERVL 16 450 0 567 105 0 12 chr3 8837536 8837622 -218686956 - AluSg/x SINE Alu -13 297 213 208 322 98 49 chr3 8837803 8837946 -218686632 + MIR SINE MIR 34 183 -79 29 0 0 0 chr3 8838037 8838066 -218686512 + AT_rich Low_complexity Low_complexity 1 29 0 31 76 0 0 chr3 8839208 8839274 -218685304 + AT_rich Low_complexity Low_complexity 1 66 0 241 111 86 19 chr3 8839286 8839448 -218685130 + (TA)n Simple_repeat Simple_repeat 1 173 0 25 31 0 0 chr3 8839448 8839480 -218685098 + AT_rich Low_complexity Low_complexity 1 32 0 21 71 0 0 chr3 8839570 8839612 -218684966 + AT_rich Low_complexity Low_complexity 1 42 0 2427 122 28 0 chr3 8840148 8840501 -218684077 + THE1B LTR MaLR 1 363 -1 11283 100 4 5 chr3 8840502 8840993 -218683585 + THE1B-int LTR MaLR 1 491 -1089 2170 100 0 28 chr3 8840993 8841313 -218683265 + AluSx SINE Alu 1 311 -1 11283 100 4 5 chr3 8841313 8842402 -218682176 + THE1B-int LTR MaLR 491 1580 0 2166 146 36 14 chr3 8842402 8842758 -218681820 + THE1B LTR MaLR 1 364 0 27 49 0 0 chr3 8842942 8842983 -218681595 + AT_rich Low_complexity Low_complexity 1 41 0 208 139 0 0 chr3 8843506 8843542 -218681036 + (TTTTTG)n Simple_repeat Simple_repeat 1 36 0 334 409 53 28 chr3 8843606 8844163 -218680415 - L2 LINE L2 -1 3271 2703 684 237 71 62 chr3 8844351 8844562 -218680016 - MER20 DNA MER1_type -5 214 2 473 254 30 45 chr3 8844917 8845051 -218679527 - L2 LINE L2 0 3313 3182 270 403 56 7 chr3 8845046 8845190 -218679388 - MER5A DNA MER1_type -38 151 1 * 299 243 19 0 chr3 8845275 8845363 -218679215 + (TA)n Simple_repeat Simple_repeat 1 93 -12 270 81 0 0 chr3 8845363 8845400 -218679178 + (CA)n Simple_repeat Simple_repeat 2 38 0 299 243 19 0 chr3 8845400 8845414 -218679164 + (TA)n Simple_repeat Simple_repeat 93 105 0 257 289 242 7 chr3 8845931 8846080 -218678498 - MER5A DNA MER1_type 0 189 6 439 231 172 11 chr3 8846224 8846410 -218678168 - L1MC/D LINE L1 -2336 5472 5257 489 264 83 7 chr3 8846680 8846956 -218677622 - MER113 DNA MER1_type? -213 308 12 279 299 0 11 chr3 8847144 8847231 -218677347 + GA-rich Low_complexity Low_complexity 2 87 0 2161 91 31 0 chr3 8847390 8847676 -218676902 - AluSg SINE Alu -15 295 1 468 276 61 33 chr3 8847711 8847892 -218676686 - MIR SINE MIR -61 201 16 21 57 0 0 chr3 8848534 8848569 -218676009 + AT_rich Low_complexity Low_complexity 1 35 0 180 0 0 0 chr3 8848751 8848771 -218675807 + (TTTTG)n Simple_repeat Simple_repeat 1 20 0 807 204 65 27 chr3 8848787 8848973 -218675605 - AluJo SINE Alu -78 234 42 276 236 16 49 chr3 8849188 8849311 -218675267 + (TATATG)n Simple_repeat Simple_repeat 2 120 0 223 241 7 51 chr3 8849258 8849395 -218675183 + (TTTA)n Simple_repeat Simple_repeat 4 134 0 * 265 321 71 36 chr3 8849395 8849507 -218675071 - MIR SINE MIR -116 146 31 308 333 84 33 chr3 8849791 8850004 -218674574 - MIR SINE MIR -31 231 8 2373 35 42 0 chr3 8850118 8850405 -218674173 + AluY SINE Alu 1 299 -12 43783 43 7 0 chr3 8850497 8856613 -218667965 + L1PA3 LINE L1 1 6152 -3 246 174 0 0 chr3 8857563 8857609 -218666969 + (TATG)n Simple_repeat Simple_repeat 2 47 0 198 0 0 0 chr3 8857676 8857698 -218666880 + (TG)n Simple_repeat Simple_repeat 2 23 0 * 345 47 0 0 chr3 8857697 8857740 -218666838 + (TA)n Simple_repeat Simple_repeat 2 44 0 2387 207 31 66 chr3 8857905 8858479 -218666099 - MLT2B3 LTR ERVL 0 554 1 765 249 42 73 chr3 8859269 8859530 -218665048 - MIR SINE MIR -4 258 6 24 77 0 0 chr3 8860608 8860660 -218663918 + AT_rich Low_complexity Low_complexity 1 52 0 193 322 119 25 chr3 8860854 8860972 -218663606 + L2 LINE L2 3180 3308 -5 466 72 14 0 chr3 8860980 8861049 -218663529 + L1MB1 LINE L1 6098 6167 -1 683 317 20 37 chr3 8861885 8862131 -218662447 + MIR SINE MIR 16 257 -5 222 37 0 0 chr3 8862531 8862558 -218662020 + (CATTT)n Simple_repeat Simple_repeat 4 30 0 2150 116 0 0 chr3 8862558 8862842 -218661736 - AluSx SINE Alu -28 284 1 22 0 0 0 chr3 8862844 8862866 -218661712 + AT_rich Low_complexity Low_complexity 1 22 0 285 274 144 14 chr3 8863642 8863788 -218660790 - MIR SINE MIR 0 262 98 1107 268 155 9 chr3 8864159 8864614 -218659964 - MLT1F1 LTR MaLR -40 527 1 2394 157 36 19 chr3 8865373 8865794 -218658784 - MSTC LTR MaLR 0 428 1 288 0 0 0 chr3 8866367 8866399 -218658179 + (T)n Simple_repeat Simple_repeat 1 32 0 524 289 88 21 chr3 8867102 8867341 -218657237 - MLT1L LTR MaLR -211 404 150 1824 156 3 0 chr3 8867547 8867830 -218656748 + AluSg SINE Alu 27 310 0 209 235 0 12 chr3 8868321 8868402 -218656176 + CT-rich Low_complexity Low_complexity 3 82 0 259 292 39 15 chr3 8868479 8868609 -218655969 + LTR67 LTR ERVL 411 543 -14 1731 134 4 19 chr3 8869047 8869315 -218655263 + AluY SINE Alu 43 306 -5 193 239 0 22 chr3 8870477 8870523 -218654055 + L2 LINE L2 3267 3311 -2 4948 191 19 14 chr3 8870685 8870982 -218653596 + L1PA16 LINE L1 4125 4419 -1747 2238 116 3 0 chr3 8870982 8871293 -218653285 - AluSx SINE Alu 0 312 1 4948 191 19 14 chr3 8871293 8872475 -218652103 + L1PA16 LINE L1 4419 5607 -559 1522 103 4 0 chr3 8872474 8872707 -218651871 - L1PA8 LINE L1 -1642 4504 4271 * 6395 101 1 1 chr3 8872707 8873360 -218651218 + L1PA8 LINE L1 4522 5174 -998 337 48 0 48 chr3 8873360 8873422 -218651156 + (CAAAA)n Simple_repeat Simple_repeat 2 60 0 6395 101 1 1 chr3 8873422 8874414 -218650164 + L1PA8 LINE L1 5173 6172 0 2664 154 0 0 chr3 8874416 8874838 -218649740 + L1PA16 LINE L1 5601 6022 -144 972 96 7 0 chr3 8874893 8875028 -218649550 + L1PA16 LINE L1 6022 6157 -9 359 310 37 61 chr3 8875704 8875949 -218648629 - MIR SINE MIR 0 262 24 204 292 0 0 chr3 8876397 8876445 -218648133 + L2 LINE L2 2679 2726 -588 1521 241 34 0 chr3 8876476 8876829 -218647749 + MLT1A1 LTR MaLR 1 365 0 2410 284 159 40 chr3 8876894 8878071 -218646507 - L2 LINE L2 -339 2975 1622 2113 126 0 0 chr3 8878071 8878365 -218646213 + AluSx SINE Alu 1 294 -18 2410 284 159 40 chr3 8878365 8878505 -218646073 - L2 LINE L2 -1692 1622 1500 306 337 11 0 chr3 8878563 8878658 -218645920 + L2 LINE L2 3168 3263 -9 216 0 0 0 chr3 8879369 8879393 -218645185 + (CA)n Simple_repeat Simple_repeat 2 25 0 6476 153 39 18 chr3 8879710 8879975 -218644603 - Tigger3b DNA MER2_type -1797 1231 973 3538 144 0 0 chr3 8879975 8880497 -218644081 + MER1A DNA MER1_type 2 523 -4 6476 153 39 18 chr3 8880497 8881434 -218643144 - Tigger3b DNA MER2_type -2055 973 4 268 284 28 6 chr3 8881873 8882049 -218642529 + (TA)n Simple_repeat Simple_repeat 1 180 0 29 0 0 0 chr3 8882496 8882525 -218642053 + AT_rich Low_complexity Low_complexity 1 29 0 4724 51 0 0 chr3 8882759 8883329 -218641249 + L1PA5 LINE L1 5572 6141 -13 229 208 0 21 chr3 8884359 8884407 -218640171 + (CA)n Simple_repeat Simple_repeat 2 48 0 312 264 10 101 chr3 8884506 8884714 -218639864 + MIR SINE MIR 61 249 -13 501 263 157 80 chr3 8885210 8885624 -218638954 - MLT1H LTR MaLR 0 549 104 2029 155 0 0 chr3 8886695 8886999 -218637579 + AluSx SINE Alu 1 304 -8 639 240 84 0 chr3 8887004 8887158 -218637420 - MER96 DNA MER1_type? -7 168 2 565 269 92 50 chr3 8887404 8887642 -218636936 + MIR SINE MIR 15 262 0 527 165 12 0 chr3 8887743 8887828 -218636750 + HUERS-P3 LTR ERV1 8830 8915 -4 2591 197 55 8 chr3 8887836 8888365 -218636213 + LTR9B LTR ERV1 7 560 -84 207 0 0 0 chr3 8888365 8888388 -218636190 + (A)n Simple_repeat Simple_repeat 1 23 0 23 78 0 0 chr3 8888587 8888638 -218635940 + AT_rich Low_complexity Low_complexity 1 51 0 1614 163 0 0 chr3 8889509 8889761 -218634817 - AluJb SINE Alu -60 252 1 283 363 88 18 chr3 8889804 8890030 -218634548 + MIR SINE MIR 4 245 -17 329 271 211 31 chr3 8890209 8890551 -218634027 - L2 LINE L2 -181 3091 2690 1414 191 3 53 chr3 8891480 8891762 -218632816 + Tigger7 DNA MER2_type 1 268 -2219 517 178 0 11 chr3 8891764 8891854 -218632724 + Tigger7 DNA MER2_type 2395 2483 -4 183 371 81 32 chr3 8891925 8892049 -218632529 - L2 LINE L2 -20 3252 3123 291 357 68 61 chr3 8892373 8892947 -218631631 - L2 LINE L2 -339 2975 2398 2112 174 22 25 chr3 8892951 8893399 -218631179 + L1MC2 LINE L1 5890 6336 -8 443 297 30 36 chr3 8893454 8893619 -218630959 - L2 LINE L2 -1286 2028 1865 1880 301 28 0 chr3 8894284 8894960 -218629618 + L1MEc LINE L1 40 771 -5625 316 314 51 0 chr3 8895199 8895317 -218629261 + MER5C DNA MER1_type 1 124 -200 246 150 117 0 chr3 8895439 8895499 -218629079 + MER5C DNA MER1_type 257 323 -1 213 39 0 0 chr3 8896055 8896081 -218628497 + (T)n Simple_repeat Simple_repeat 1 26 0 2194 125 0 0 chr3 8897115 8897418 -218627160 - AluSx SINE Alu -9 303 1 2522 87 0 0 chr3 8897646 8897957 -218626621 - AluY SINE Alu 0 311 1 226 0 59 0 chr3 8898736 8898770 -218625808 + (TTTTG)n Simple_repeat Simple_repeat 2 37 0 3364 90 25 0 chr3 8898772 8899218 -218625360 - LTR22A LTR ERVK 0 458 2 965 226 5 5 chr3 8901886 8902090 -218622488 - MER20 DNA MER1_type 0 219 16 299 279 64 47 chr3 8903000 8903172 -218621406 + MLT1K LTR MaLR 412 586 -2 244 164 75 0 chr3 8904496 8904563 -218620015 - L1M4 LINE L1 -1438 4708 4637 391 297 21 7 chr3 8904850 8904995 -218619583 - ERVL LTR ERVL -4096 1668 1522 299 317 40 71 chr3 8905384 8905709 -218618869 - ERVL LTR ERVL -4618 1036 722 1184 300 90 7 chr3 8906271 8906714 -218617864 - MLT2E LTR ERVL -7 621 142 343 349 40 20 chr3 8906870 8907019 -218617559 + MIR SINE MIR 11 162 -100 475 261 25 6 chr3 8907020 8907181 -218617397 + L1MCa LINE L1 156 319 -6245 3271 53 24 40 chr3 8907264 8907719 -218616859 + LTR7 LTR ERV1 1 448 -2 19619 83 9 27 chr3 8907721 8910761 -218613817 + HERVH LTR ERV1 1 2987 -4726 858 135 20 0 chr3 8910755 8910903 -218613675 + HERVH LTR ERV1 3140 3290 -4423 * 2964 133 4 6 chr3 8910893 8911396 -218613182 + HERVH LTR ERV1 3492 3993 -3720 10066 60 7 3 chr3 8911398 8912754 -218611824 + HERVH LTR ERV1 4488 5848 -1865 253 233 101 39 chr3 8912791 8912920 -218611658 + L1MCa LINE L1 744 880 -5165 1936 105 94 0 chr3 8912931 8913208 -218611370 + AluY SINE Alu 1 303 -8 3231 230 76 41 chr3 8913213 8913422 -218611156 + L1MCa LINE L1 969 1169 -5395 2491 76 0 13 chr3 8913422 8913737 -218610841 + AluY SINE Alu 1 311 0 3231 230 76 41 chr3 8913737 8916636 -218607942 + L1MCa LINE L1 1169 4289 -2275 241 231 0 0 chr3 8916639 8916691 -218607887 + LTR30 LTR ERV1 1 52 -670 1079 165 134 27 chr3 8916691 8916952 -218607626 + pTR5 LTR ERV1 1395 1683 -755 1235 191 52 30 chr3 8916964 8917293 -218607285 + L1MC2 LINE L1 5999 6334 -10 186 103 0 0 chr3 8917421 8917450 -218607128 + (TTA)n Simple_repeat Simple_repeat 1 29 0 23 33 0 0 chr3 8918354 8918384 -218606194 + AT_rich Low_complexity Low_complexity 1 30 0 180 304 25 25 chr3 8919121 8919200 -218605378 + MIR SINE MIR 16 94 -114 315 63 0 127 chr3 8919257 8919320 -218605258 - MLT2D LTR ERVL -11 403 349 7390 61 4 0 chr3 8919441 8920450 -218604128 + L1P LINE L1 4391 5403 -743 1742 169 63 23 chr3 8920461 8920811 -218603767 - MLT2D LTR ERVL -50 364 1 196 336 25 8 chr3 8920813 8920935 -218603643 + MIR SINE MIR 139 262 0 25 51 0 0 chr3 8921700 8921739 -218602839 + AT_rich Low_complexity Low_complexity 1 39 0 2149 181 60 2 chr3 8922136 8922572 -218602006 + LOR1b LTR ERV1 1 461 0 21 0 0 0 chr3 8922750 8922771 -218601807 + AT_rich Low_complexity Low_complexity 1 21 0 233 239 90 15 chr3 8923611 8923678 -218600900 + MIR SINE MIR 68 139 -123 600 293 54 16 chr3 8924035 8924277 -218600301 - MIR SINE MIR -6 256 6 488 249 106 67 chr3 8924351 8924819 -218599759 + MLT1H LTR MaLR 29 549 0 346 198 86 43 chr3 8924841 8924957 -218599621 - L1ME4a LINE L1 -1 6120 6000 231 244 0 0 chr3 8924984 8925029 -218599549 - MIR SINE MIR -23 239 195 454 329 87 0 chr3 8925269 8925430 -218599148 - MIR SINE MIR -87 175 1 646 213 0 8 chr3 8925701 8925823 -218598755 + FLAM_A SINE Alu 5 125 -8 329 208 83 104 chr3 8927079 8927142 -218597436 + MER5B DNA MER1_type 1 64 -114 2328 119 0 0 chr3 8927142 8927454 -218597124 + AluSx SINE Alu 1 312 0 329 208 83 104 chr3 8927454 8927534 -218597044 + MER5B DNA MER1_type 64 141 -37 413 296 88 39 chr3 8927722 8927982 -218596596 + MLT1L LTR MaLR 123 395 -220 273 273 76 8 chr3 8928028 8928160 -218596418 + MLT1L LTR MaLR 466 606 -9 22 0 0 0 chr3 8928636 8928658 -218595920 + AT_rich Low_complexity Low_complexity 1 22 0 433 235 0 12 chr3 8928789 8928874 -218595704 + L2 LINE L2 3230 3313 0 182 268 155 0 chr3 8929251 8929322 -218595256 - L2 LINE L2 -10 3303 3222 628 309 18 0 chr3 8929808 8929976 -218594602 - MER5B DNA MER1_type 0 178 8 27 0 0 0 chr3 8930336 8930363 -218594215 + AT_rich Low_complexity Low_complexity 1 27 0 282 194 60 0 chr3 8931068 8931135 -218593443 - MER58 DNA MER1_type -13 2407 2337 623 259 115 8 chr3 8932015 8932258 -218592320 + MER5C DNA MER1_type 1 269 -55 3199 111 31 0 chr3 8932422 8932898 -218591680 + PABL_A LTR ERV1 1 491 -169 1957 115 36 91 chr3 8932898 8933102 -218591476 - THE1B LTR MaLR -1 363 188 2235 131 0 0 chr3 8933102 8933414 -218591164 - AluSx SINE Alu 0 312 1 1957 115 36 91 chr3 8933414 8933593 -218590985 - THE1B LTR MaLR -176 188 1 11396 101 12 3 chr3 8933593 8935159 -218589419 - THE1B-int LTR MaLR 0 1580 1 2242 138 8 24 chr3 8935159 8935529 -218589049 - THE1B LTR MaLR 0 364 1 1156 87 29 6 chr3 8935529 8935701 -218588877 + PABL_A LTR ERV1 485 660 0 269 241 72 0 chr3 8935740 8935823 -218588755 - MIR SINE MIR -70 192 104 438 236 26 47 chr3 8935823 8935960 -218588618 - LTR37B LTR ERV1 0 468 335 4067 122 19 2 chr3 8935960 8936584 -218587994 - MER41B LTR ERV1 0 635 1 438 236 26 47 chr3 8936584 8936637 -218587941 - LTR37B LTR ERV1 -133 335 282 740 164 111 58 chr3 8936669 8936858 -218587720 + MER93b LTR ERV1 27 225 -148 1653 194 83 35 chr3 8937056 8937683 -218586895 + MER39 LTR ERV1 8 707 0 574 226 59 23 chr3 8937690 8937909 -218586669 - MER39 LTR ERV1 -426 227 6 347 56 42 14 chr3 8938115 8938187 -218586391 + (TTTA)n Simple_repeat Simple_repeat 2 75 0 7240 30 0 0 chr3 8938187 8939083 -218585495 - L1PA3 LINE L1 -6 6149 5254 512 264 21 0 chr3 8939092 8939232 -218585346 + MIR SINE MIR 86 228 -34 430 220 83 15 chr3 8941477 8941609 -218582969 - MER104 DNA Tc2 -18 162 22 38 0 0 0 chr3 8941758 8941796 -218582782 + AT_rich Low_complexity Low_complexity 1 38 0 572 113 0 0 chr3 8942245 8942325 -218582253 + AluS SINE Alu 1 80 -233 2063 128 38 0 chr3 8942327 8942616 -218581962 + AluSq SINE Alu 14 313 0 260 262 99 29 chr3 8942617 8942789 -218581789 + MLT1K LTR MaLR 405 588 0 200 326 78 54 chr3 8942874 8943003 -218581575 + L2 LINE L2 3182 3313 0 185 333 0 48 chr3 8943191 8943254 -218581324 + L2 LINE L2 3200 3259 -13 1640 113 254 29 chr3 8943933 8944279 -218580299 - MSTA LTR MaLR -2 426 3 301 344 76 18 chr3 8945033 8945257 -218579321 - MIR SINE MIR -14 248 12 336 318 40 27 chr3 8946033 8946181 -218578397 - MIR SINE MIR -12 250 101 192 431 29 0 chr3 8946305 8946407 -218578171 - MIR SINE MIR -97 165 61 455 0 18 0 chr3 8947734 8947789 -218576789 + (TAGA)n Simple_repeat Simple_repeat 2 57 0 250 330 40 10 chr3 8947800 8947900 -218576678 + L2 LINE L2 3210 3312 -1 527 260 130 6 chr3 8948178 8948347 -218576231 - L3 LINE CR1 -76 1501 1312 1986 224 41 64 chr3 8949895 8950461 -218574117 + MLT2B3 LTR ERVL 2 554 0 230 224 15 15 chr3 8951512 8951579 -218572999 + (TA)n Simple_repeat Simple_repeat 2 68 0 717 252 13 8 chr3 8951579 8951740 -218572838 - MIR SINE MIR -67 141 23 1361 222 11 40 chr3 8951740 8952091 -218572487 - MER58B DNA MER1_type 0 341 1 717 252 13 8 chr3 8952091 8952109 -218572469 - MIR SINE MIR -185 23 7 328 246 339 0 chr3 8952120 8952250 -218572328 + MER5A DNA MER1_type 16 189 0 413 201 132 35 chr3 8952443 8952587 -218571991 - MER103 DNA DNA -7 159 2 334 246 0 154 chr3 8952837 8953012 -218571566 + MIR SINE MIR 96 243 -19 894 224 16 0 chr3 8953099 8953291 -218571287 + MER3 DNA MER1_type 15 209 0 206 391 126 11 chr3 8954160 8954510 -218570068 + L2 LINE L2 2369 2758 -556 2271 206 57 7 chr3 8954944 8955380 -218569198 - LTR32 LTR ERVL 0 471 14 284 310 65 60 chr3 8955380 8955564 -218569014 + L2 LINE L2 3087 3271 -1 182 156 0 0 chr3 8956547 8956579 -218567999 - L2 LINE L2 -1 3271 3240 361 309 55 36 chr3 8956688 8956908 -218567670 - MLT1K LTR MaLR -2 586 363 1957 221 54 74 chr3 8957026 8957805 -218566773 - LTR28 LTR ERV1 0 1020 109 397 241 207 13 chr3 8957806 8957967 -218566611 - LTR28 LTR ERV1 -286 178 1 1285 190 146 24 chr3 8958701 8959127 -218565451 - LTR54B LTR ERV1 -2 496 19 191 263 25 38 chr3 8959283 8959363 -218565215 + L2 LINE L2 3150 3228 -44 1993 139 11 0 chr3 8959424 8959711 -218564867 + AluSq SINE Alu 1 290 -23 1094 194 18 14 chr3 8959712 8959929 -218564649 + MER20 DNA MER1_type 2 219 0 246 333 9 9 chr3 8959943 8960048 -218564530 - MIR SINE MIR -111 151 47 2134 92 26 36 chr3 8961975 8962280 -218562298 - AluSp SINE Alu -11 302 1 2102 190 19 12 chr3 8962529 8962940 -218561638 - MLT2D LTR ERVL 0 414 1 1553 155 107 0 chr3 8963662 8963951 -218560627 - AluSx SINE Alu 0 320 5 195 357 18 65 chr3 8964135 8964303 -218560275 - L2 LINE L2 -225 3047 2888 2206 99 27 0 chr3 8965142 8965434 -218559144 - AluSg1 SINE Alu -9 300 1 1768 190 116 9 chr3 8965775 8966196 -218558382 - MLT1C LTR MaLR -1 466 1 329 373 42 0 chr3 8967099 8967241 -218557337 - MIR3 SINE MIR -25 183 36 572 237 0 0 chr3 8967420 8967534 -218557044 - Charlie1 DNA MER1_type 0 2761 2648 2395 197 52 41 chr3 8967538 8968147 -218556431 - L1MB8 LINE L1 -2 6245 5630 2781 265 27 7 chr3 8968154 8969081 -218555497 - L1MB8 LINE L1 -2516 3699 2751 1805 201 18 0 chr3 8969081 8969419 -218555159 + MER2 DNA MER2_type 1 344 0 2781 265 27 7 chr3 8969419 8969453 -218555125 - L1MB8 LINE L1 -3464 2751 2719 2055 132 0 10 chr3 8969460 8969771 -218554807 - MER50 LTR ERV1 -30 704 397 1565 117 8 25 chr3 8969804 8970044 -218554534 - MER50 LTR ERV1 -498 236 1 1108 258 87 15 chr3 8970044 8970855 -218553723 - L1MB8 LINE L1 -3493 2722 1868 351 203 0 0 chr3 8970990 8971064 -218553514 + (TA)n Simple_repeat Simple_repeat 1 74 0 4633 252 57 51 chr3 8971081 8971925 -218552653 - L1M4 LINE L1 -4467 2565 1727 2535 71 0 0 chr3 8971925 8972236 -218552342 - AluY SINE Alu 0 311 1 4633 252 57 51 chr3 8972236 8973487 -218551091 - L1M4 LINE L1 -5305 1727 2 871 201 22 93 chr3 8973488 8973756 -218550822 - Charlie1 DNA MER1_type -2512 249 1 260 51 0 26 chr3 8974033 8974072 -218550506 + (CA)n Simple_repeat Simple_repeat 1 38 0 180 182 0 0 chr3 8975674 8975718 -218548860 + (TTCA)n Simple_repeat Simple_repeat 1 44 0 570 347 60 8 chr3 8976543 8976791 -218547787 - MIR SINE MIR -1 261 1 255 308 0 0 chr3 8976808 8976873 -218547705 + A-rich Low_complexity Low_complexity 4 68 0 315 271 134 53 chr3 8976878 8977125 -218547453 + HAL1 LINE L1 1011 1277 -1230 443 308 8 0 chr3 8977129 8977262 -218547316 + GA-rich Low_complexity Low_complexity 3 136 0 21 36 0 0 chr3 8977289 8977317 -218547261 + AT_rich Low_complexity Low_complexity 1 28 0 520 253 148 13 chr3 8977344 8977573 -218547005 + MIR SINE MIR 1 260 -2 238 330 0 0 chr3 8978473 8978561 -218546017 + (TG)n Simple_repeat Simple_repeat 1 88 0 997 206 123 83 chr3 8978806 8979156 -218545422 + MLT1A1 LTR MaLR 1 364 -1 464 298 115 34 chr3 8979662 8979897 -218544681 - MIR SINE MIR 0 262 9 2256 115 0 0 chr3 8979901 8980205 -218544373 - AluSx SINE Alu -8 304 1 2176 109 7 0 chr3 8980504 8980797 -218543781 - AluSx SINE Alu -13 299 5 2123 110 0 7 chr3 8981968 8982267 -218542311 - AluSx SINE Alu -15 297 1 216 185 0 0 chr3 8982725 8982779 -218541799 + T-rich Low_complexity Low_complexity 1 54 0 512 277 36 0 chr3 8983006 8983143 -218541435 - MER45B DNA AcHobo -786 254 113 410 268 93 22 chr3 8983315 8983498 -218541080 + MER117 DNA MER1_type 2 197 0 26 30 0 0 chr3 8985175 8985208 -218539370 + AT_rich Low_complexity Low_complexity 1 33 0 183 246 49 16 chr3 8985304 8985365 -218539213 + MIR3 SINE MIR 118 180 -28 21 36 0 0 chr3 8986369 8986397 -218538181 + AT_rich Low_complexity Low_complexity 1 28 0 302 345 48 12 chr3 8986578 8986746 -218537832 - HAL1b LINE L1 -438 910 737 2474 52 0 0 chr3 8987394 8987708 -218536870 - AluY SINE Alu 0 314 1 249 323 16 16 chr3 8987727 8987854 -218536724 - HAL1 LINE L1 -837 1670 1544 1712 126 100 0 chr3 8988128 8988397 -218536181 + AluJb SINE Alu 1 296 -16 2096 109 0 0 chr3 8988586 8988861 -218535717 - AluSc SINE Alu -18 291 17 423 274 36 48 chr3 8989118 8989286 -218535292 - L1ME3A LINE L1 -9 6161 5996 860 250 59 10 chr3 8990999 8991403 -218533175 - L1ME LINE L1 -2884 3760 3337 1624 179 188 8 chr3 8991659 8992016 -218532562 + MSTC LTR MaLR 8 428 0 777 271 163 18 chr3 8992020 8992070 -218532508 + MLT1E1 LTR MaLR 89 130 -463 3087 86 32 5 chr3 8992070 8992107 -218532471 - MLT2A1 LTR ERVL 0 444 410 333 0 0 0 chr3 8992107 8992144 -218532434 + (CA)n Simple_repeat Simple_repeat 2 38 0 3087 86 32 5 chr3 8992144 8992538 -218532040 - MLT2A1 LTR ERVL -34 410 1 777 271 163 18 chr3 8992538 8992764 -218531814 + MLT1E1 LTR MaLR 130 405 -188 800 257 6 6 chr3 8992888 8993067 -218531511 + MLT1E1 LTR MaLR 476 654 0 345 280 36 44 chr3 8993085 8993335 -218531243 - L1ME LINE L1 -3744 2900 2653 2355 92 0 3 chr3 8993936 8994242 -218530336 - AluY SINE Alu -6 305 1 242 255 38 84 chr3 8994273 8994536 -218530042 - L1ME LINE L1 -4904 1638 1516 30532 34 15 1 chr3 8994586 9000604 -218523974 - L1PA2 LINE L1 -2 6153 4 385 258 76 59 chr3 9000612 9000954 -218523624 - L1ME LINE L1 -5075 1559 1271 341 324 90 37 chr3 9001822 9002066 -218522512 - HAL1 LINE L1 -1426 1081 825 414 0 0 0 chr3 9002687 9002733 -218521845 + (TG)n Simple_repeat Simple_repeat 2 47 0 216 273 71 40 chr3 9003563 9003662 -218520916 - L2 LINE L2 -4 3309 3208 1949 123 7 3 chr3 9003978 9004301 -218520277 - AluSq SINE Alu 0 324 1 794 292 75 35 chr3 9004399 9004800 -218519778 - MLT2F LTR ERVL -10 653 237 375 285 152 19 chr3 9004814 9005077 -218519501 - MLT2F LTR ERVL -353 310 13 619 341 35 0 chr3 9005225 9005454 -218519124 + MIR SINE MIR 19 255 -7 1880 204 25 46 chr3 9006135 9006615 -218517963 - L1MA9 LINE L1 -35 6277 5808 12212 38 1 1 chr3 9006922 9009163 -218515415 + L1PA4 LINE L1 3907 6153 -2 226 386 48 24 chr3 9009204 9009499 -218515079 + L2 LINE L2 2045 2346 -968 499 295 68 91 chr3 9009788 9010270 -218514308 + L2 LINE L2 1606 2076 -1238 21 0 0 0 chr3 9011473 9011494 -218513084 + AT_rich Low_complexity Low_complexity 1 21 0 908 327 51 57 chr3 9011507 9012073 -218512505 + MLT1K LTR MaLR 10 572 -16 264 77 0 0 chr3 9012885 9012924 -218511654 + (CA)n Simple_repeat Simple_repeat 2 40 0 651 214 0 0 chr3 9012924 9013069 -218511509 + L1MA9 LINE L1 6168 6312 0 2477 69 0 0 chr3 9013333 9013637 -218510941 - AluY SINE Alu -7 304 1 213 324 14 27 chr3 9013904 9013978 -218510600 - L2 LINE L2 -9 3263 3191 4831 106 11 3 chr3 9014857 9015565 -218509013 + L1PA13 LINE L1 5448 6161 -2 237 265 119 92 chr3 9015744 9015863 -218508715 + MIR SINE MIR 48 175 -87 2261 105 3 0 chr3 9015863 9016168 -218508410 + AluY SINE Alu 1 306 -5 237 265 119 92 chr3 9016168 9016233 -218508345 + MIR SINE MIR 175 237 -25 253 295 0 0 chr3 9016835 9016913 -218507665 + L1MC/D LINE L1 5722 5799 -2009 2238 55 10 3 chr3 9017330 9017620 -218506958 - AluY SINE Alu -19 292 1 238 164 0 30 chr3 9017944 9018011 -218506567 + T-rich Low_complexity Low_complexity 4 68 0 1575 158 16 16 chr3 9021095 9021398 -218503180 - L1MA4 LINE L1 -1 6299 5997 291 93 0 0 chr3 9022842 9022885 -218501693 + (CA)n Simple_repeat Simple_repeat 2 44 0 2156 123 10 0 chr3 9023007 9023332 -218501246 - AluSc SINE Alu 0 328 1 1548 173 40 4 chr3 9023344 9023622 -218500956 - AluJb SINE Alu -24 288 1 433 319 122 55 chr3 9023983 9024222 -218500356 - L3 LINE CR1 -751 826 604 1817 207 89 20 chr3 9024222 9024729 -218499849 + MER34 LTR ERV1 1 542 0 433 319 122 55 chr3 9024729 9024877 -218499701 - L3 LINE CR1 -973 604 404 2316 60 3 33 chr3 9024877 9025179 -218499399 - AluY SINE Alu -18 293 1 433 319 122 55 chr3 9025179 9025226 -218499352 - L3 LINE CR1 -1173 404 362 216 297 90 9 chr3 9027095 9027206 -218497372 + MIR SINE MIR 58 177 -85 26 0 0 0 chr3 9027925 9027951 -218496627 + AT_rich Low_complexity Low_complexity 1 26 0 3235 98 20 2 chr3 9028426 9028864 -218495714 + LTR10B LTR ERV1 1 446 -59 1217 205 17 8 chr3 9028868 9029107 -218495471 - MLT1A1 LTR MaLR -124 241 1 5699 236 75 37 chr3 9029113 9030777 -218493801 - MLT1A1-int LTR MaLR -7 1728 2 845 170 24 5 chr3 9030779 9031079 -218493499 - MLT1A1 LTR MaLR 0 365 1 290 298 101 63 chr3 9031170 9031328 -218493250 + MIR SINE MIR 36 199 -63 374 351 93 7 chr3 9031523 9031674 -218492904 + MIR SINE MIR 82 245 -17 216 276 81 41 chr3 9033824 9033947 -218490631 - L2 LINE L2 -1 3312 3185 30 27 0 0 chr3 9034183 9034220 -218490358 + AT_rich Low_complexity Low_complexity 1 37 0 208 366 55 24 chr3 9034244 9034408 -218490170 + L3b LINE CR1 1391 1559 -24 2309 113 0 0 chr3 9036279 9036588 -218487990 + AluSx SINE Alu 1 309 -3 627 228 24 87 chr3 9037044 9037250 -218487328 - MER58C DNA MER1_type -21 194 2 341 256 0 0 chr3 9037852 9037927 -218486651 + MER45 DNA AcHobo 1507 1581 0 707 247 7 0 chr3 9037941 9038091 -218486487 - MER45A DNA AcHobo -6 172 22 27 29 0 0 chr3 9039104 9039138 -218485440 + AT_rich Low_complexity Low_complexity 1 34 0 37 39 0 0 chr3 9039996 9040047 -218484531 + AT_rich Low_complexity Low_complexity 1 51 0 2127 117 23 10 chr3 9040052 9040360 -218484218 + AluSq SINE Alu 1 312 -1 296 322 67 13 chr3 9040972 9041121 -218483457 - L2 LINE L2 -213 3059 2903 1399 177 12 4 chr3 9041193 9041447 -218483131 - MER83 LTR ERV1 0 448 193 228 35 0 0 chr3 9041683 9041712 -218482866 + (TTTTTG)n Simple_repeat Simple_repeat 2 30 0 299 326 112 66 chr3 9042735 9042977 -218481601 - L2 LINE L2 -16 3256 3004 714 225 0 80 chr3 9043938 9044125 -218480453 + FAM SINE Alu 2 173 -2 279 0 0 0 chr3 9044518 9044549 -218480029 + (TTTA)n Simple_repeat Simple_repeat 2 32 0 7223 77 19 0 chr3 9044560 9046317 -218478261 - L1PA7 LINE L1 -11 6143 4369 25610 96 6 21 chr3 9046317 9051619 -218472959 - L1P3 LINE L1 -1164 5297 1 1649 195 3 3 chr3 9051947 9052244 -218472334 - AluJb SINE Alu -13 299 3 299 319 174 7 chr3 9052307 9052445 -218472133 - MER5A DNA MER1_type -3 186 26 271 287 101 23 chr3 9053120 9053249 -218471329 - MIR SINE MIR 0 262 124 * 316 347 143 40 chr3 9053229 9053723 -218470855 + L2 LINE L2 2672 3227 -86 2149 114 7 0 chr3 9054290 9054580 -218469998 + AluSc SINE Alu 1 292 -17 352 321 141 13 chr3 9055734 9056006 -218468572 - MLT1L LTR MaLR 0 615 229 776 183 7 0 chr3 9056095 9056232 -218468346 + AluJo SINE Alu 1 138 -174 7783 18 0 0 chr3 9056283 9057646 -218466932 - L1PA2 LINE L1 0 6155 4792 3590 19 0 0 chr3 9057646 9058068 -218466510 + L1PA2 LINE L1 4369 4790 -1356 342 294 228 28 chr3 9058072 9058252 -218466326 - MIR SINE MIR -46 216 1 567 278 81 45 chr3 9058584 9058849 -218465729 - L1MC4 LINE L1 -527 7515 7261 2032 193 119 104 chr3 9058849 9059663 -218464915 + LTR1B LTR ERV1 1 826 0 567 278 81 45 chr3 9059663 9059916 -218464662 - L1MC4 LINE L1 -781 7261 6976 204 113 0 94 chr3 9059921 9059974 -218464604 + (TTTTTG)n Simple_repeat Simple_repeat 2 49 0 336 316 66 7 chr3 9060073 9060225 -218464353 + L1MC4 LINE L1 7498 7658 -384 450 303 59 47 chr3 9060243 9060563 -218464015 + L1MC4 LINE L1 7712 8035 -7 723 268 6 11 chr3 9060896 9061075 -218463503 - MER58A DNA MER1_type -22 202 25 225 393 13 20 chr3 9061134 9061284 -218463294 + L2 LINE L2 2907 3055 -217 209 205 205 26 chr3 9061472 9061550 -218463028 + L2 LINE L2 3218 3309 -4 2251 135 0 0 chr3 9061807 9062118 -218462460 + AluSx SINE Alu 1 311 -1 22 35 0 0 chr3 9062547 9062576 -218462002 + AT_rich Low_complexity Low_complexity 1 29 0 4154 125 24 5 chr3 9062737 9063369 -218461209 + LTR9B LTR ERV1 1 644 0 30 27 0 0 chr3 9063456 9063493 -218461085 + AT_rich Low_complexity Low_complexity 1 37 0 1772 171 15 73 chr3 9065479 9065888 -218458690 - MLT1B LTR MaLR 0 390 6 413 194 0 0 chr3 9066306 9066373 -218458205 + Tigger2 DNA MER2_type 1 67 -2651 * 2579 169 11 5 chr3 9066359 9066808 -218457770 + Tigger2 DNA MER2_type 2267 2718 0 6534 147 37 36 chr3 9067466 9068063 -218456515 + Tigger3b DNA MER2_type 1 596 -2432 2261 109 0 7 chr3 9068063 9068365 -218456213 + AluSc SINE Alu 1 300 -9 6534 147 37 36 chr3 9068365 9068997 -218455581 + Tigger3b DNA MER2_type 596 1231 0 224 29 0 29 chr3 9069510 9069544 -218455034 + (CAAAAA)n Simple_repeat Simple_repeat 2 34 0 1315 232 30 55 chr3 9069760 9069801 -218454777 - MLT2C2 LTR ERVL -3 461 420 315 71 0 0 chr3 9069801 9069843 -218454735 + (TG)n Simple_repeat Simple_repeat 2 43 0 1315 232 30 55 chr3 9069843 9070270 -218454308 - MLT2C2 LTR ERVL -44 420 5 2544 99 17 11 chr3 9070590 9070952 -218453626 - THE1B LTR MaLR 0 364 1 2128 122 0 16 chr3 9073546 9073858 -218450720 + AluSx SINE Alu 1 307 -5 396 103 0 0 chr3 9073858 9073916 -218450662 + (GGAA)n Simple_repeat Simple_repeat 1 58 0 2387 64 3 0 chr3 9074546 9074842 -218449736 + AluY SINE Alu 1 297 -14 2121 96 24 3 chr3 9076608 9076900 -218447678 + AluSp SINE Alu 1 298 -15 23 33 0 0 chr3 9078537 9078567 -218446011 + AT_rich Low_complexity Low_complexity 1 30 0 706 293 28 23 chr3 9078898 9079113 -218445465 - MIR SINE MIR -46 216 1 2384 61 14 0 chr3 9080211 9080508 -218444070 - AluY SINE Alu -10 301 1 507 279 14 7 chr3 9080610 9080750 -218443828 - MLT1G1 LTR MaLR -440 155 15 468 344 26 31 chr3 9080795 9080990 -218443588 - MIR SINE MIR -41 221 28 381 289 78 67 chr3 9081029 9081475 -218443103 + HAL1b LINE L1 224 674 -674 27 0 0 0 chr3 9081791 9081818 -218442760 + AT_rich Low_complexity Low_complexity 1 27 0 333 0 0 0 chr3 9082103 9082140 -218442438 + (TG)n Simple_repeat Simple_repeat 2 38 0 346 283 23 58 chr3 9082390 9082563 -218442015 - L1M4 LINE L1 -1446 4700 4534 2078 124 3 0 chr3 9082755 9083037 -218441541 - AluSp SINE Alu -30 283 1 21 36 0 0 chr3 9083215 9083243 -218441335 + AT_rich Low_complexity Low_complexity 1 28 0 1014 287 44 75 chr3 9083838 9084426 -218440152 + L1MC2 LINE L1 13 582 -5463 1814 161 3 17 chr3 9085033 9085332 -218439246 - AluJo SINE Alu -17 295 1 292 194 16 0 chr3 9085348 9085410 -218439168 + L1MC2 LINE L1 762 824 -5742 4289 228 90 52 chr3 9085438 9085784 -218438794 + L1M3e LINE L1 781 1112 -5451 2046 161 0 0 chr3 9085784 9086094 -218438484 + AluSx SINE Alu 1 310 -2 4289 228 90 52 chr3 9086094 9087379 -218437199 + L1M3e LINE L1 1112 2449 -4114 2614 188 27 21 chr3 9087379 9087852 -218436726 + MLT2B2 LTR ERVL 1 479 -36 261 98 0 0 chr3 9087852 9087893 -218436685 + (TG)n Simple_repeat Simple_repeat 2 42 0 2614 188 27 21 chr3 9087893 9087931 -218436647 + MLT2B2 LTR ERVL 479 515 0 4289 228 90 52 chr3 9087931 9088183 -218436395 + L1M3e LINE L1 2449 2690 -3873 1299 225 11 11 chr3 9088219 9088486 -218436092 + Tigger7 DNA MER2_type 1 267 -466 306 225 14 14 chr3 9088484 9088555 -218436023 + Tigger7 DNA MER2_type 2389 2459 -28 * 309 222 14 14 chr3 9088576 9088648 -218435930 + Tigger7 DNA MER2_type 2393 2464 -27 334 197 0 28 chr3 9088669 9088740 -218435838 + Tigger7 DNA MER2_type 2396 2464 -27 279 236 14 14 chr3 9088760 9088832 -218435746 + Tigger7 DNA MER2_type 2389 2460 -27 471 223 0 21 chr3 9088853 9088947 -218435631 + Tigger7 DNA MER2_type 2392 2483 -4 6744 231 71 55 chr3 9088949 9089855 -218434723 + L1MC2 LINE L1 2866 3756 -3006 294 29 0 0 chr3 9089855 9089890 -218434688 + (TC)n Simple_repeat Simple_repeat 2 36 0 6744 231 71 55 chr3 9089890 9090872 -218433706 + L1MC2 LINE L1 3756 4720 -2042 1242 169 4 8 chr3 9090872 9091120 -218433458 + L1MA4 LINE L1 6053 6299 -1 6744 231 71 55 chr3 9091120 9093059 -218431519 + L1MC2 LINE L1 4720 6754 -8 5179 248 74 61 chr3 9093423 9094959 -218429619 - L1M4 LINE L1 -1145 5001 3409 2146 102 0 0 chr3 9094959 9095269 -218429309 - AluSq SINE Alu 0 310 1 5179 248 74 61 chr3 9095269 9096576 -218428002 - L1M4 LINE L1 -2737 3409 2120 3706 177 31 20 chr3 9096578 9097514 -218427064 + L1PA16 LINE L1 4964 5914 -252 896 148 13 19 chr3 9097528 9097683 -218426895 + L1PA16 LINE L1 6001 6154 -12 583 249 105 30 chr3 9097694 9098007 -218426571 + L1ME LINE L1 5191 5521 -645 * 20481 55 10 2 chr3 9097976 9102573 -218422005 + L1PA5 LINE L1 1524 6153 -1 5862 196 42 37 chr3 9103332 9105690 -218418888 - L1MA7 LINE L1 -10 7700 5325 3921 240 57 26 chr3 9105673 9106789 -218417789 - L1MA7 LINE L1 -2689 4876 3687 * 2484 135 3 3 chr3 9106789 9107152 -218417426 - THE1B LTR MaLR -1 363 1 3921 240 57 26 chr3 9107152 9107552 -218417026 - L1MA7 LINE L1 -3878 3687 3301 1975 254 41 25 chr3 9107749 9108305 -218416273 - L1MA7 LINE L1 -5715 1781 1217 335 241 116 9 chr3 9109037 9109149 -218415429 + MLT1J2 LTR MaLR 324 447 -3 488 323 64 59 chr3 9109166 9109621 -218414957 - L2 LINE L2 -6 3307 2851 1579 163 0 7 chr3 9109733 9110003 -218414575 + AluJb SINE Alu 1 268 -44 204 143 0 0 chr3 9110007 9110049 -218414529 + (GAAA)n Simple_repeat Simple_repeat 4 45 0 607 184 11 34 chr3 9110057 9110236 -218414342 + GA-rich Low_complexity Low_complexity 2 176 0 695 361 92 24 chr3 9110408 9110954 -218413624 - L2 LINE L2 -650 2664 2082 251 248 29 88 chr3 9113425 9113562 -218411016 - L1MC4 LINE L1 0 8042 7914 1019 273 74 71 chr3 9113589 9114308 -218410270 - L1MC4 LINE L1 -120 7922 7202 1558 211 31 0 chr3 9114364 9114724 -218409854 - L1MD1 LINE L1 -8 6628 6258 2815 230 15 20 chr3 9114725 9115555 -218409023 - L1MD1 LINE L1 -428 6208 5376 1387 189 20 20 chr3 9115555 9115856 -218408722 - L1MB2 LINE L1 -8 6163 5863 2815 230 15 20 chr3 9115856 9115907 -218408671 - L1MD1 LINE L1 -1260 5376 5326 189 74 0 0 chr3 9115907 9115934 -218408644 + (ATTG)n Simple_repeat Simple_repeat 2 28 0 2815 230 15 20 chr3 9115934 9116057 -218408521 - L1MD1 LINE L1 -1310 5326 5213 1040 269 85 13 chr3 9116054 9116725 -218407853 - L1MD1 LINE L1 -2405 4135 3397 * 416 170 7 54 chr3 9116738 9116830 -218407748 - L1MD1 LINE L1 -3962 2578 2494 2303 88 0 3 chr3 9116830 9117136 -218407442 - AluSx SINE Alu -7 305 1 416 170 7 54 chr3 9117136 9117190 -218407388 - L1MD1 LINE L1 -4046 2494 2439 1601 229 72 105 chr3 9117240 9117820 -218406758 + MER77 LTR ERV1 41 601 -4 3274 235 170 50 chr3 9117850 9117977 -218406601 - L1MD1 LINE L1 -5137 1403 1293 1734 156 0 11 chr3 9117977 9118259 -218406319 - AluSg SINE Alu -31 279 1 3274 235 170 50 chr3 9118259 9119370 -218405208 - L1MD1 LINE L1 -5247 1293 16 302 326 11 0 chr3 9119555 9119644 -218404934 + L2 LINE L2 3199 3288 -25 322 298 109 32 chr3 9121300 9121548 -218403030 + L1ME4a LINE L1 5842 6108 -13 492 190 84 42 chr3 9122322 9122464 -218402114 + MIR SINE MIR 102 249 -13 198 263 0 0 chr3 9122512 9122550 -218402028 + L2 LINE L2 3251 3288 -25 374 139 14 0 chr3 9122559 9122631 -218401947 + (ATG)n Simple_repeat Simple_repeat 1 73 0 293 368 8 45 chr3 9122679 9122812 -218401766 + MER91A DNA MER1_type 47 174 -22 3639 125 49 16 chr3 9123144 9123776 -218400802 + MER39B LTR ERV1 1 653 0 2302 103 0 0 chr3 9123855 9124156 -218400422 - AluSc SINE Alu -8 301 1 267 304 44 44 chr3 9125639 9125774 -218398804 + MER5C DNA MER1_type 1 135 -189 229 279 66 41 chr3 9126095 9126217 -218398361 - MIR SINE MIR -25 237 113 221 308 56 19 chr3 9126427 9126534 -218398044 + MIR SINE MIR 46 156 -106 265 276 0 13 chr3 9126963 9127039 -218397539 + MIR SINE MIR 172 246 -16 192 360 101 36 chr3 9127212 9127351 -218397227 + MIR3 SINE MIR 16 163 -45 1104 143 32 0 chr3 9127592 9127781 -218396797 - Tigger4(Zombi) DNA MER2_type 0 2731 2537 1557 214 62 10 chr3 9127786 9128090 -218396488 - Tigger4(Zombi) DNA MER2_type -2410 321 2 817 189 60 78 chr3 9129334 9129551 -218395027 + MER20 DNA MER1_type 7 219 0 2323 184 19 17 chr3 9129775 9130243 -218394335 - MER39 LTR ERV1 -6 701 233 253 122 22 89 chr3 9130342 9130432 -218394146 + (ATATG)n Simple_repeat Simple_repeat 2 85 0 771 278 94 74 chr3 9130645 9131185 -218393393 + LTR1B LTR ERV1 39 589 -237 1905 206 43 5 chr3 9132026 9132424 -218392154 + MER34C LTR ERV1 172 584 -1 503 240 25 8 chr3 9132425 9132546 -218392032 + MIR SINE MIR 116 238 -24 214 343 0 0 chr3 9132554 9132624 -218391954 + MIR SINE MIR 193 262 0 1374 134 44 19 chr3 9133285 9133720 -218390858 + LTR54 LTR ERV1 2 508 -2 189 395 98 14 chr3 9134159 9134506 -218390072 - L2 LINE L2 -4 3309 2934 406 322 94 55 chr3 9134561 9134597 -218389981 - L2 LINE L2 -465 2849 2816 225 0 0 0 chr3 9134597 9134622 -218389956 + (CAGAGA)n Simple_repeat Simple_repeat 3 27 0 406 322 94 55 chr3 9134622 9135054 -218389524 - L2 LINE L2 -498 2816 2363 517 375 11 23 chr3 9135084 9135231 -218389347 - L3 LINE CR1 -473 1104 960 869 228 105 40 chr3 9135231 9135631 -218388947 + LTR37A LTR ERV1 1 426 0 517 375 11 23 chr3 9135631 9135747 -218388831 - L3 LINE CR1 -617 960 844 835 114 16 0 chr3 9135859 9135982 -218388596 + AluSp/q SINE Alu 177 301 -12 301 283 40 0 chr3 9136532 9136626 -218387952 - MER34 LTR ERV1 0 542 445 338 222 0 28 chr3 9136626 9136698 -218387880 - Tigger5 DNA MER2_type 0 2323 2254 236 213 0 98 chr3 9136707 9136768 -218387810 - Tigger5 DNA MER2_type -2268 55 1 266 146 107 117 chr3 9136768 9136855 -218387723 - LTR49 LTR ERV1 -90 505 420 2219 187 69 16 chr3 9136855 9137449 -218387129 + MER39 LTR ERV1 1 707 0 548 250 57 39 chr3 9137449 9137815 -218386763 - LTR48B LTR ERV1 -179 608 1 21 0 0 0 chr3 9137959 9137980 -218386598 + AT_rich Low_complexity Low_complexity 1 21 0 1707 180 7 7 chr3 9138489 9138795 -218385783 + AluJo SINE Alu 1 306 -6 200 85 21 43 chr3 9140216 9140263 -218384315 + (TAA)n Simple_repeat Simple_repeat 2 47 0 615 179 15 45 chr3 9140595 9140729 -218383849 - FLAM_A SINE Alu -3 130 1 1773 232 73 13 chr3 9140913 9141508 -218383070 + MER39 LTR ERV1 1 707 0 24 53 0 0 chr3 9141774 9141812 -218382766 + AT_rich Low_complexity Low_complexity 1 38 0 2235 109 0 3 chr3 9142780 9143092 -218381486 - AluSx SINE Alu -1 311 1 627 225 55 69 chr3 9143752 9143970 -218380608 + MER58C DNA MER1_type 1 215 0 232 250 89 0 chr3 9144333 9144389 -218380189 - L2 LINE L2 -73 3240 3180 1024 206 5 0 chr3 9144978 9145182 -218379396 - MER3 DNA MER1_type -4 205 1 277 257 128 0 chr3 9145423 9145532 -218379046 - L1ME3A LINE L1 -8 6162 6040 2346 75 0 0 chr3 9146801 9147094 -218377484 + AluY SINE Alu 1 293 -18 234 0 0 0 chr3 9147413 9147439 -218377139 + (TG)n Simple_repeat Simple_repeat 1 26 0 * 237 33 0 0 chr3 9147438 9147468 -218377110 + (GA)n Simple_repeat Simple_repeat 1 30 0 309 322 66 16 chr3 9147469 9147590 -218376988 + L2 LINE L2 3187 3313 0 185 333 43 21 chr3 9147897 9147990 -218376588 + MIR SINE MIR 73 167 -95 3042 197 22 35 chr3 9148168 9149089 -218375489 + L1MA6 LINE L1 4654 5585 -715 2057 67 0 4 chr3 9149089 9149358 -218375220 - AluY SINE Alu -7 304 37 3042 197 22 35 chr3 9149358 9149633 -218374945 + L1MA6 LINE L1 5585 5862 -438 216 0 0 0 chr3 9149633 9149657 -218374921 + (TC)n Simple_repeat Simple_repeat 1 24 0 * 300 27 0 0 chr3 9149656 9149693 -218374885 + (CA)n Simple_repeat Simple_repeat 1 37 0 3042 197 22 35 chr3 9149657 9150198 -218374380 + L1MA6 LINE L1 5862 6300 0 460 299 199 19 chr3 9151223 9151434 -218373144 + MIR SINE MIR 13 261 -1 222 325 136 26 chr3 9151801 9151955 -218372623 + MIR3 SINE MIR 29 199 -9 1120 245 66 23 chr3 9152406 9152753 -218371825 - MLT1A1 LTR MaLR -3 362 1 2259 110 7 0 chr3 9153219 9153528 -218371050 + AluSq SINE Alu 1 311 -2 1376 162 78 60 chr3 9153539 9153872 -218370706 - MER44D DNA MER2_type 0 609 1 1504 196 25 71 chr3 9154252 9154644 -218369934 + MLT1A2 LTR MaLR 1 374 0 1057 203 5 5 chr3 9155034 9155231 -218369347 + AluJo SINE Alu 104 300 -12 451 292 37 33 chr3 9155269 9155696 -218368882 + L1ME LINE L1 5204 5636 -534 1509 167 0 116 chr3 9156063 9156416 -218368162 + AluJo SINE Alu 1 312 0 474 242 75 17 chr3 9157628 9157748 -218366830 - L2 LINE L2 0 3313 3187 236 324 56 19 chr3 9158342 9158450 -218366128 - L2 LINE L2 -206 3066 2955 200 205 0 0 chr3 9158515 9158554 -218366024 + (TTCA)n Simple_repeat Simple_repeat 4 42 0 21 36 0 0 chr3 9159146 9159174 -218365404 + AT_rich Low_complexity Low_complexity 1 28 0 2296 104 0 0 chr3 9159974 9160272 -218364306 - AluSx SINE Alu -14 298 1 606 256 102 76 chr3 9160279 9160700 -218363878 - L1ME2 LINE L1 -1 6163 5732 388 242 40 32 chr3 9161821 9161945 -218362633 + MIR SINE MIR 94 218 -44 371 356 94 32 chr3 9162445 9162998 -218361580 + L2 LINE L2 1818 2404 -910 2102 148 85 10 chr3 9163506 9163904 -218360674 - MSTA LTR MaLR 0 428 1 9133 154 6 35 chr3 9163904 9165529 -218359049 - MSTA-int LTR MaLR 0 1580 3 2181 131 79 22 chr3 9165531 9165936 -218358642 - MSTA LTR MaLR 0 428 1 258 116 0 0 chr3 9166620 9166663 -218357915 + (GA)n Simple_repeat Simple_repeat 2 44 0 273 314 12 12 chr3 9166720 9166806 -218357772 - L2 LINE L2 -8 3264 3179 280 365 19 0 chr3 9167254 9167361 -218357217 + MIR SINE MIR 30 138 -70 193 267 133 13 chr3 9168178 9168253 -218356325 - MIR SINE MIR -11 251 168 433 224 97 30 chr3 9168674 9168911 -218355667 + HAL1b LINE L1 909 1161 -187 352 341 65 14 chr3 9169690 9169907 -218354671 - MIR SINE MIR -15 247 20 1706 219 88 17 chr3 9169959 9170346 -218354232 + MLT2C2 LTR ERVL 11 432 -32 303 28 0 0 chr3 9170346 9170382 -218354196 + (CA)n Simple_repeat Simple_repeat 2 37 0 1706 219 88 17 chr3 9170382 9170415 -218354163 + MLT2C2 LTR ERVL 432 461 -3 2224 115 51 28 chr3 9170751 9171107 -218353471 - THE1B LTR MaLR 0 364 1 11219 108 4 4 chr3 9171108 9172686 -218351892 - THE1B-int LTR MaLR -1 1579 1 2195 133 0 0 chr3 9172715 9173024 -218351554 - AluSc SINE Alu 0 309 1 2048 135 51 31 chr3 9173024 9173380 -218351198 - THE1B LTR MaLR -1 363 1 914 249 72 16 chr3 9173510 9173594 -218350984 + MER113 DNA MER1_type? 2 80 -441 1922 190 115 26 chr3 9173594 9174099 -218350479 - MER44D DNA MER2_type 0 605 1 914 249 72 16 chr3 9174099 9174388 -218350190 + MER113 DNA MER1_type? 80 396 -125 450 296 101 5 chr3 9175009 9175198 -218349380 - L3 LINE CR1 -97 1480 1274 225 192 19 19 chr3 9175934 9175986 -218348592 + GA-rich Low_complexity Low_complexity 1 52 0 2276 161 57 0 chr3 9176197 9176602 -218347976 + MSTA LTR MaLR 1 428 0 7899 183 71 7 chr3 9176602 9178140 -218346438 + MSTA-int LTR MaLR 1 1637 -14 2316 170 39 0 chr3 9178164 9178576 -218346002 + MSTA LTR MaLR 1 428 0 537 317 31 9 chr3 9179245 9179469 -218345109 - MER110 LTR ERV1 -93 398 170 241 282 42 0 chr3 9179559 9179630 -218344948 - MER110 LTR ERV1 -317 174 101 985 86 43 0 chr3 9180037 9180177 -218344401 - AluY SINE Alu 0 311 166 447 267 26 10 chr3 9180208 9180396 -218344182 - MER5B DNA MER1_type 0 178 12 267 368 63 45 chr3 9180537 9181134 -218343444 - L2 LINE L2 -167 3105 2489 1616 171 0 0 chr3 9182062 9182337 -218342241 + L1MC1 LINE L1 6058 6332 -1 233 372 47 17 chr3 9182706 9182841 -218341737 + MIR SINE MIR 13 156 -106 9082 108 12 2 chr3 9182841 9184115 -218340463 + HSMAR1 DNA Mariner 1 1287 0 233 372 47 17 chr3 9184115 9184151 -218340427 + MIR SINE MIR 156 189 -73 270 308 98 35 chr3 9184181 9184324 -218340254 + MIR3 SINE MIR 50 201 -7 2337 90 0 0 chr3 9184658 9184946 -218339632 + AluSc SINE Alu 5 292 -17 639 158 48 24 chr3 9184953 9185118 -218339460 - MER53 DNA DNA -19 170 2 294 300 25 56 chr3 9186209 9186369 -218338209 + MIR SINE MIR 64 218 -44 530 284 88 77 chr3 9187611 9187963 -218336615 - L2 LINE L2 -14 3299 2944 26 0 0 0 chr3 9189069 9189095 -218335483 + AT_rich Low_complexity Low_complexity 1 26 0 481 309 104 54 chr3 9189187 9189611 -218334967 - MLT1K LTR MaLR -43 545 101 384 298 19 10 chr3 9189761 9189897 -218334681 - MIR SINE MIR -68 140 6 2697 26 3 0 chr3 9190609 9190919 -218333659 - AluY SINE Alu 0 311 1 345 272 173 25 chr3 9191002 9191164 -218333414 - MER5A DNA MER1_type 0 189 4 199 322 132 16 chr3 9192654 9192775 -218331803 - MIR SINE MIR -109 153 19 217 304 0 14 chr3 9192944 9193013 -218331565 + GA-rich Low_complexity Low_complexity 3 70 0 7415 32 2 0 chr3 9193307 9194496 -218330082 - L1PA4 LINE L1 -6 6149 4960 243 200 24 12 chr3 9194663 9194748 -218329830 + CT-rich Low_complexity Low_complexity 3 88 0 1931 132 60 0 chr3 9195058 9195339 -218329239 + AluSx SINE Alu 1 298 -14 27 29 0 0 chr3 9195792 9195826 -218328752 + AT_rich Low_complexity Low_complexity 1 34 0 387 0 0 0 chr3 9195841 9195884 -218328694 + (TA)n Simple_repeat Simple_repeat 1 43 0 214 244 0 0 chr3 9196006 9196047 -218328531 - L2 LINE L2 -48 3265 3225 206 160 20 0 chr3 9196105 9196155 -218328423 + (TA)n Simple_repeat Simple_repeat 1 51 0 1522 174 144 17 chr3 9196436 9196797 -218327781 - MLT1D LTR MaLR -2 503 97 203 203 16 0 chr3 9197110 9197174 -218327404 + (TA)n Simple_repeat Simple_repeat 2 66 0 21 57 0 0 chr3 9197683 9197718 -218326860 + AT_rich Low_complexity Low_complexity 1 35 0 1583 266 53 21 chr3 9197718 9197758 -218326820 + L1MDb LINE L1 61 98 -6311 1585 210 48 11 chr3 9197758 9198110 -218326468 - MLT1A1 LTR MaLR 0 365 1 1583 266 53 21 chr3 9198110 9198634 -218325944 + L1MDb LINE L1 98 643 -5766 352 327 22 54 chr3 9198621 9198849 -218325729 + L1MDb LINE L1 406 650 -5759 * 590 279 21 37 chr3 9198880 9199070 -218325508 + L1MDb LINE L1 661 847 -5562 1647 224 72 93 chr3 9199074 9199931 -218324647 + L1MDb LINE L1 914 1752 -4654 490 275 25 63 chr3 9199976 9200260 -218324318 - L1MDa LINE L1 -4369 2171 1899 3518 234 31 75 chr3 9200272 9201899 -218322679 + L1MDb LINE L1 2560 4114 -2292 2234 119 3 0 chr3 9202334 9202644 -218321934 - AluSp SINE Alu -2 311 1 73 32 0 0 chr3 9203414 9203508 -218321070 + AT_rich Low_complexity Low_complexity 1 94 0 1424 239 58 3 chr3 9203519 9203899 -218320679 + L1MDb LINE L1 4099 4499 -1907 880 281 4 28 chr3 9204134 9204383 -218320195 + MLT1E LTR MaLR 351 593 0 210 71 0 0 chr3 9204786 9204814 -218319764 + (GTTTG)n Simple_repeat Simple_repeat 2 29 0 315 0 0 0 chr3 9204875 9204910 -218319668 + (TTTC)n Simple_repeat Simple_repeat 2 36 0 1157 101 6 24 chr3 9204916 9205085 -218319493 - AluY SINE Alu -145 166 1 21 36 0 0 chr3 9206590 9206618 -218317960 + AT_rich Low_complexity Low_complexity 1 28 0 419 242 74 0 chr3 9207614 9207709 -218316869 - MLT1H LTR MaLR -315 234 133 27 0 0 0 chr3 9208193 9208220 -218316358 + AT_rich Low_complexity Low_complexity 1 27 0 731 289 7 49 chr3 9209099 9209403 -218315175 + L1PA15 LINE L1 1280 1570 -5217 293 259 12 0 chr3 9209401 9209482 -218315096 + L1PA15 LINE L1 1489 1570 -5217 * 269 272 12 0 chr3 9209480 9209561 -218315017 + L1PA15 LINE L1 1489 1570 -5217 * 269 272 12 0 chr3 9209559 9209640 -218314938 + L1PA15 LINE L1 1489 1570 -5217 269 272 12 0 chr3 9209638 9209719 -218314859 + L1PA15 LINE L1 1489 1570 -5217 269 272 12 0 chr3 9209717 9209798 -218314780 + L1PA15 LINE L1 1489 1570 -5217 * 15280 210 21 16 chr3 9209796 9214282 -218310296 + L1PA15 LINE L1 1489 6012 -804 2105 126 3 0 chr3 9214282 9214576 -218310002 + AluSg SINE Alu 2 296 -14 15280 210 21 16 chr3 9214576 9215383 -218309195 + L1PA15 LINE L1 6012 6813 -3 32 43 0 0 chr3 9215407 9215453 -218309125 + AT_rich Low_complexity Low_complexity 1 46 0 386 286 57 65 chr3 9216378 9216623 -218307955 + MLT1L LTR MaLR 129 371 -244 409 129 0 0 chr3 9217649 9217719 -218306859 - L1PB3 LINE L1 -2 6152 6083 4309 138 6 6 chr3 9217950 9218623 -218305955 - L1PB3 LINE L1 -45 6109 5437 1490 214 20 23 chr3 9218616 9219008 -218305570 + L1P LINE L1 4958 5348 -798 * 574 131 0 0 chr3 9219009 9219093 -218305485 - AluS SINE Alu -228 84 1 506 338 46 9 chr3 9219355 9219574 -218305004 - MIR SINE MIR -27 235 9 189 0 0 0 chr3 9219829 9219850 -218304728 + (TG)n Simple_repeat Simple_repeat 2 22 0 358 265 29 37 chr3 9220529 9220665 -218303913 - MLT1K LTR MaLR -8 580 446 499 275 70 31 chr3 9221504 9221733 -218302845 - L2 LINE L2 -4 3309 3072 180 394 16 37 chr3 9221905 9222093 -218302485 + L2 LINE L2 2988 3171 -142 412 173 71 0 chr3 9222099 9222267 -218302311 + (TA)n Simple_repeat Simple_repeat 1 180 0 * 414 127 58 58 chr3 9222229 9222402 -218302176 + (TATAA)n Simple_repeat Simple_repeat 5 177 0 430 287 31 8 chr3 9222591 9222720 -218301858 + L2 LINE L2 3173 3304 -9 201 328 172 40 chr3 9222750 9222924 -218301654 + MIR SINE MIR 4 200 -62 208 219 0 62 chr3 9223009 9223073 -218301505 - L2 LINE L2 0 3313 3254 21 36 0 0 chr3 9224017 9224045 -218300533 + AT_rich Low_complexity Low_complexity 1 28 0 305 24 24 0 chr3 9224045 9224087 -218300491 + (TC)n Simple_repeat Simple_repeat 2 44 0 826 227 13 40 chr3 9224984 9225209 -218299369 + MER20 DNA MER1_type 1 219 0 189 0 0 0 chr3 9225358 9225379 -218299199 + (TA)n Simple_repeat Simple_repeat 2 22 0 1761 184 7 3 chr3 9225379 9225673 -218298905 - AluJb SINE Alu -17 295 1 750 201 84 11 chr3 9226463 9226642 -218297936 + LTR47A LTR ERVL 261 452 0 521 173 18 125 chr3 9227041 9227068 -218297510 - MER5B DNA MER1_type -1 177 149 1468 191 71 31 chr3 9227068 9227419 -218297159 + MLT1A1 LTR MaLR 1 365 0 521 173 18 125 chr3 9227419 9227559 -218297019 - MER5B DNA MER1_type -29 149 28 225 65 0 0 chr3 9227624 9227655 -218296923 + (TC)n Simple_repeat Simple_repeat 2 32 0 335 282 116 39 chr3 9227726 9227907 -218296671 - MIR SINE MIR 0 262 68 216 298 0 0 chr3 9227982 9228039 -218296539 + MER5B DNA MER1_type 2 58 -120 7600 201 41 13 chr3 9228046 9228615 -218295963 + L1MC3 LINE L1 6059 6610 -1175 3660 68 0 6 chr3 9228615 9229098 -218295480 - L1PA8 LINE L1 0 6172 5693 7600 201 41 13 chr3 9229098 9230196 -218294382 + L1MC3 LINE L1 6610 7773 -12 341 250 29 58 chr3 9230245 9230349 -218294229 - MER5B DNA MER1_type -71 107 7 2539 49 7 0 chr3 9230589 9230896 -218293682 + AluY SINE Alu 2 310 -1 300 91 0 0 chr3 9231870 9231914 -218292664 + (TG)n Simple_repeat Simple_repeat 1 44 0 1974 169 31 6 chr3 9231916 9232271 -218292307 - THE1B LTR MaLR 0 364 1 247 281 0 0 chr3 9232355 9232412 -218292166 - MIR3 SINE MIR -50 158 102 771 312 0 14 chr3 9233789 9234010 -218290568 + MIR SINE MIR 45 262 0 21 57 0 0 chr3 9234441 9234476 -218290102 + AT_rich Low_complexity Low_complexity 1 35 0 2089 148 14 6 chr3 9237002 9237361 -218287217 - L1MA5 LINE L1 -478 5822 5461 2376 172 9 13 chr3 9237365 9237825 -218286753 + L1MA5 LINE L1 5843 6300 0 1033 301 32 60 chr3 9238011 9238508 -218286070 + MLT1H LTR MaLR 1 549 0 3721 169 4 7 chr3 9238913 9239605 -218284973 + L1MB1 LINE L1 5479 6168 0 869 179 104 112 chr3 9239680 9239843 -218284735 - MER2 DNA MER2_type -1 344 181 2228 133 128 8 chr3 9239843 9240225 -218284353 - MSTA LTR MaLR 0 428 1 869 179 104 112 chr3 9240225 9240408 -218284170 - MER2 DNA MER2_type -164 181 1 195 311 14 0 chr3 9240438 9240512 -218284066 - MIR3 SINE MIR -12 196 122 223 308 0 15 chr3 9240881 9240946 -218283632 + L3b LINE CR1 1206 1269 -314 333 305 178 5 chr3 9242921 9243118 -218281460 + MIR SINE MIR 29 259 -3 1611 186 21 0 chr3 9243174 9243454 -218281124 + AluJo SINE Alu 1 286 -26 243 0 0 0 chr3 9243454 9243481 -218281097 + (TTAA)n Simple_repeat Simple_repeat 4 30 0 2331 106 0 0 chr3 9244815 9245127 -218279451 + AluSx SINE Alu 1 312 0 1939 130 0 23 chr3 9245763 9246063 -218278515 - MER4A LTR ERV1 0 664 372 586 133 0 10 chr3 9246116 9246214 -218278364 - MER4A LTR ERV1 -566 98 2 475 244 1 22 chr3 9247157 9247267 -218277311 + MLT1E LTR MaLR 58 163 -404 214 181 0 24 chr3 9247267 9247350 -218277228 + (TA)n Simple_repeat Simple_repeat 1 81 0 1746 224 38 33 chr3 9247374 9247767 -218276811 + MLT1E LTR MaLR 199 593 0 1803 131 60 0 chr3 9247964 9248253 -218276325 - AluSx SINE Alu 0 305 1 566 261 48 52 chr3 9249214 9249463 -218275115 + LTR16A1 LTR ERVL 209 456 -1 21 0 0 0 chr3 9249834 9249855 -218274723 + AT_rich Low_complexity Low_complexity 1 21 0 232 286 0 0 chr3 9250004 9250067 -218274511 + (CA)n Simple_repeat Simple_repeat 2 64 0 207 100 0 0 chr3 9251002 9251032 -218273546 + (TAGA)n Simple_repeat Simple_repeat 4 33 0 764 160 8 8 chr3 9251780 9251911 -218272667 - FLAM_C SINE Alu 0 133 3 353 295 38 0 chr3 9253064 9253169 -218271409 - MIR SINE MIR -104 158 50 321 277 52 59 chr3 9254495 9254769 -218269809 + L1ME4a LINE L1 5634 5908 -213 2012 141 10 0 chr3 9254769 9255066 -218269512 + AluSx SINE Alu 1 300 -12 321 277 52 59 chr3 9255066 9255108 -218269470 + L1ME4a LINE L1 5908 5949 -172 3134 167 86 28 chr3 9255108 9255795 -218268783 - LTR8A LTR ERV1 0 727 1 321 277 52 59 chr3 9255795 9255899 -218268679 + L1ME4a LINE L1 5949 6052 -69 439 349 108 4 chr3 9256503 9256781 -218267797 + L2 LINE L2 211 517 -2797 615 340 199 16 chr3 9256875 9257648 -218266930 + L2 LINE L2 982 1896 -1418 36 77 0 0 chr3 9258019 9258097 -218266481 + AT_rich Low_complexity Low_complexity 1 78 0 353 195 0 11 chr3 9258286 9258373 -218266205 + CT-rich Low_complexity Low_complexity 2 87 0 2448 63 0 0 chr3 9258885 9259187 -218265391 + AluY SINE Alu 1 302 -9 2287 83 0 13 chr3 9259584 9259884 -218264694 + AluSq SINE Alu 1 296 -17 220 211 42 28 chr3 9261250 9261321 -218263257 + (CAGAGA)n Simple_repeat Simple_repeat 4 75 0 23 33 0 0 chr3 9261479 9261509 -218263069 + AT_rich Low_complexity Low_complexity 1 30 0 311 313 99 15 chr3 9261803 9261934 -218262644 - MER5A DNA MER1_type -1 188 47 280 283 132 9 chr3 9261848 9261954 -218262624 + MER5A DNA MER1_type 68 186 -3 * 334 310 35 35 chr3 9261984 9262100 -218262478 + MIR SINE MIR 30 145 -63 471 143 36 0 chr3 9262108 9262192 -218262386 + L1MA5 LINE L1 6209 6295 -5 31 58 0 0 chr3 9262313 9262365 -218262213 + AT_rich Low_complexity Low_complexity 1 52 0 1912 178 3 23 chr3 9263832 9264186 -218260392 + MER7A DNA MER2_type 2 346 0 21 57 0 0 chr3 9264317 9264352 -218260226 + AT_rich Low_complexity Low_complexity 1 35 0 4752 182 26 40 chr3 9264662 9265553 -218259025 + L1MA4 LINE L1 4422 5325 -975 1944 131 40 0 chr3 9265553 9265850 -218258728 + AluSx SINE Alu 1 309 -3 4752 182 26 40 chr3 9265850 9266633 -218257945 + L1MA4 LINE L1 5325 6081 -219 2184 102 7 3 chr3 9266633 9266927 -218257651 + AluSx SINE Alu 1 295 -17 4752 182 26 40 chr3 9266927 9267138 -218257440 + L1MA4 LINE L1 6081 6294 -6 771 314 89 14 chr3 9267153 9267637 -218256941 + HAL1b LINE L1 305 824 -524 251 324 57 27 chr3 9268122 9268600 -218255978 + L1ME4a LINE L1 4168 4659 -1487 306 290 41 14 chr3 9268707 9268852 -218255726 + L1ME4a LINE L1 4804 4952 -1194 302 239 67 110 chr3 9269066 9269275 -218255303 + L1ME4a LINE L1 5259 5458 -2350 318 310 57 78 chr3 9269286 9269567 -218255011 + L1ME4a LINE L1 5509 5783 -2025 419 264 183 10 chr3 9270695 9270899 -218253679 + MIR SINE MIR 11 248 -14 198 0 0 0 chr3 9270918 9270940 -218253638 + (TTTG)n Simple_repeat Simple_repeat 3 24 0 2921 86 8 0 chr3 9270940 9271337 -218253241 - L1PA10 LINE L1 -20 6148 5749 219 69 0 0 chr3 9273018 9273047 -218251531 + (A)n Simple_repeat Simple_repeat 1 29 0 405 293 20 7 chr3 9273076 9273223 -218251355 - MER113 DNA MER1_type? -4 517 369 1114 66 7 0 chr3 9273225 9273377 -218251201 + L1PA13 LINE L1 6011 6163 0 481 301 71 0 chr3 9273380 9273576 -218251002 - MER63A DNA MER1_type 0 210 1 41706 39 23 1 chr3 9273817 9279779 -218244799 - L1PA3 LINE L1 0 6155 64 21 0 0 0 chr3 9279817 9279838 -218244740 + AT_rich Low_complexity Low_complexity 1 21 0 183 80 0 0 chr3 9281355 9281380 -218243198 + (GA)n Simple_repeat Simple_repeat 2 26 0 379 292 50 8 chr3 9281492 9281612 -218242966 - MIR SINE MIR -57 151 27 273 330 0 0 chr3 9283845 9283939 -218240639 - MIR SINE MIR 0 262 169 1069 187 38 14 chr3 9284525 9284734 -218239844 - MER20 DNA MER1_type 0 219 6 402 266 21 63 chr3 9284849 9284992 -218239586 - MER5A DNA MER1_type 0 189 53 246 116 0 0 chr3 9284992 9285035 -218239543 + (T)n Simple_repeat Simple_repeat 1 43 0 2458 60 0 0 chr3 9285242 9285544 -218239034 - AluY SINE Alu -9 302 1 1405 111 0 44 chr3 9285820 9286045 -218238533 - L1PA16 LINE L1 -2 6164 5950 230 277 60 60 chr3 9287969 9288004 -218236574 + L1ME4a LINE L1 5955 5989 -132 2134 126 7 3 chr3 9288004 9288314 -218236264 + AluSx SINE Alu 2 312 0 230 277 60 60 chr3 9288314 9288444 -218236134 + L1ME4a LINE L1 5988 6120 -1 745 289 82 40 chr3 9288721 9289340 -218235238 - L2 LINE L2 -39 3274 2630 536 211 80 44 chr3 9289363 9289563 -218235015 + MER58 DNA MER1_type 1 2420 0 813 253 39 52 chr3 9289652 9289960 -218234618 - L2 LINE L2 -710 2604 2301 188 167 0 19 chr3 9290059 9290113 -218234465 + (TAA)n Simple_repeat Simple_repeat 3 55 0 944 265 89 29 chr3 9290171 9290552 -218234026 + LTR16B LTR ERVL 27 430 -34 271 301 11 32 chr3 9290612 9290705 -218233873 - MIR SINE MIR -70 192 102 933 213 32 19 chr3 9290846 9291062 -218233516 + MER20 DNA MER1_type 1 219 0 21 36 0 0 chr3 9291831 9291859 -218232719 + AT_rich Low_complexity Low_complexity 1 28 0 495 252 99 0 chr3 9292662 9292793 -218231785 - MIR SINE MIR -87 175 32 212 376 0 12 chr3 9292979 9293064 -218231514 + MIR3 SINE MIR 94 177 -31 804 139 115 171 chr3 9293096 9293383 -218231195 + AluJb SINE Alu 42 312 0 1275 97 20 5 chr3 9293445 9293641 -218230937 - L1MA3 LINE L1 0 6305 6107 2297 147 16 8 chr3 9294246 9294634 -218229944 + L1MC1 LINE L1 5943 6333 0 33 0 0 0 chr3 9297065 9297098 -218227480 + AT_rich Low_complexity Low_complexity 1 33 0 383 231 78 111 chr3 9297129 9297372 -218227206 - MLT1K LTR MaLR 0 588 354 4347 188 36 4 chr3 9297459 9298359 -218226219 - L1MC2 LINE L1 -9 6335 5408 213 65 0 0 chr3 9301222 9301253 -218223325 + (T)n Simple_repeat Simple_repeat 1 31 0 1962 192 31 17 chr3 9302020 9302442 -218222136 + MSTA LTR MaLR 1 428 0 273 335 115 0 chr3 9302500 9302718 -218221860 + L1ME LINE L1 5549 5791 -330 3721 151 55 8 chr3 9302857 9303609 -218220969 - L1MA4 LINE L1 -323 5977 5190 599 245 45 39 chr3 9303624 9303680 -218220898 - MLT1H LTR MaLR -379 170 116 2016 108 21 10 chr3 9303680 9303968 -218220610 + AluSq SINE Alu 8 298 -15 599 245 45 39 chr3 9303968 9304066 -218220512 - MLT1H LTR MaLR -433 116 15 225 225 0 0 chr3 9304576 9304616 -218219962 + MIR SINE MIR 82 121 -87 24 32 0 0 chr3 9304999 9305030 -218219548 + AT_rich Low_complexity Low_complexity 1 31 0 1398 124 0 5 chr3 9305533 9305734 -218218844 - AluSc SINE Alu 0 309 110 24 0 0 0 chr3 9305994 9306018 -218218560 + AT_rich Low_complexity Low_complexity 1 24 0 752 355 60 48 chr3 9306479 9307366 -218217212 - L2 LINE L2 -219 3053 2158 386 335 22 54 chr3 9307366 9307551 -218217027 - MER5A DNA MER1_type -1 188 10 397 338 87 27 chr3 9307559 9308009 -218216569 - L2 LINE L2 -1158 2156 1680 2125 241 27 46 chr3 9308068 9308137 -218216441 - L1MB7 LINE L1 0 6184 6115 1943 75 113 0 chr3 9308137 9308403 -218216175 - AluSg SINE Alu -13 297 2 2125 241 27 46 chr3 9308403 9308989 -218215589 - L1MB7 LINE L1 -69 6115 5541 384 256 65 60 chr3 9309436 9309604 -218214974 + MIR SINE MIR 80 248 -14 415 285 85 60 chr3 9311486 9311686 -218212892 - MIR SINE MIR -1 261 57 1769 137 22 4 chr3 9311785 9312063 -218212515 + AluSx SINE Alu 15 297 -15 21 0 0 0 chr3 9312113 9312134 -218212444 + AT_rich Low_complexity Low_complexity 1 21 0 2152 106 0 48 chr3 9312743 9313055 -218211523 - AluSq SINE Alu -16 297 1 453 282 60 46 chr3 9314597 9314766 -218209812 + MLT1J2 LTR MaLR 58 234 -212 663 123 123 0 chr3 9314766 9314896 -218209682 - L1PB2 LINE L1 0 6151 6006 453 282 60 46 chr3 9314896 9314981 -218209597 + MLT1J2 LTR MaLR 234 316 -130 194 304 72 0 chr3 9315123 9315192 -218209386 - L2 LINE L2 -13 3259 3186 2092 138 3 3 chr3 9315594 9315898 -218208680 + AluSx SINE Alu 1 304 -8 245 271 43 57 chr3 9316029 9316169 -218208409 - L1ME3A LINE L1 -6 6164 6027 398 231 133 6 chr3 9316302 9316475 -218208103 - L1ME3A LINE L1 -232 5938 5744 351 284 134 83 chr3 9316965 9317350 -218207228 + L2 LINE L2 2906 3312 -1 282 119 30 15 chr3 9317357 9317424 -218207154 + GA-rich Low_complexity Low_complexity 3 70 0 329 291 27 27 chr3 9319311 9319421 -218205157 - MIR3 SINE MIR -1 207 98 217 235 76 101 chr3 9319439 9319558 -218205020 - L2 LINE L2 0 3313 3198 495 342 82 0 chr3 9319628 9319859 -218204719 + MIR SINE MIR 1 250 -12 288 153 124 146 chr3 9320089 9320226 -218204352 + MER91B DNA MER1_type 31 164 -26 1037 274 125 63 chr3 9320344 9320855 -218203723 - MLT1G1 LTR MaLR -5 590 48 205 299 0 15 chr3 9320901 9320968 -218203610 + L2 LINE L2 3248 3313 0 1431 183 70 8 chr3 9322359 9322616 -218201962 - AluJb SINE Alu -39 273 1 2157 124 0 3 chr3 9323198 9323496 -218201082 - AluSg SINE Alu -13 297 1 210 303 13 13 chr3 9323551 9323627 -218200951 + L2 LINE L2 3188 3263 -9 2458 151 2 28 chr3 9323706 9324129 -218200449 - MSTB1 LTR MaLR -20 412 1 252 0 0 0 chr3 9325393 9325421 -218199157 + (A)n Simple_repeat Simple_repeat 1 28 0 1479 144 0 132 chr3 9326771 9327098 -218197480 + AluJo SINE Alu 11 294 -18 643 291 119 61 chr3 9327102 9327151 -218197427 - MLT1I LTR MaLR -45 364 319 2192 129 3 0 chr3 9327151 9327462 -218197116 - AluSx SINE Alu 0 312 1 643 291 119 61 chr3 9327462 9327756 -218196822 - MLT1I LTR MaLR -90 319 1 2053 188 62 7 chr3 9327778 9328182 -218196396 - MSTB LTR MaLR 0 426 1 302 311 39 10 chr3 9328650 9328753 -218195825 + L2 LINE L2 3196 3301 -12 360 125 0 0 chr3 9330408 9330472 -218194106 + (CA)n Simple_repeat Simple_repeat 2 65 0 294 200 0 0 chr3 9330687 9330742 -218193836 - L2 LINE L2 0 3313 3259 208 309 11 32 chr3 9331084 9331178 -218193400 - MIR3 SINE MIR -7 201 110 449 70 0 14 chr3 9332247 9332318 -218192260 + (TAGA)n Simple_repeat Simple_repeat 4 73 0 2158 126 0 3 chr3 9332452 9332753 -218191825 - AluSx SINE Alu -12 300 1 22 70 0 0 chr3 9332799 9332842 -218191736 + AT_rich Low_complexity Low_complexity 1 43 0 383 360 29 6 chr3 9332995 9333170 -218191408 + MER5A DNA MER1_type 8 186 -3 283 271 90 71 chr3 9333276 9333431 -218191147 + MIR SINE MIR 41 198 -64 710 134 11 213 chr3 9334482 9334759 -218189819 - L1MA9 LINE L1 0 6312 6092 2124 102 3 3 chr3 9336443 9336728 -218187850 + AluSc SINE Alu 3 287 -22 367 218 0 32 chr3 9337461 9337585 -218186993 + CT-rich Low_complexity Low_complexity 1 120 0 181 275 120 93 chr3 9337601 9337859 -218186719 + L2 LINE L2 2995 3259 -54 6090 14 0 0 chr3 9338475 9339175 -218185403 - L1PA4 LINE L1 -202 5953 5254 1605 57 9 0 chr3 9339183 9339395 -218185183 + L1PA4 LINE L1 5942 6155 0 2101 121 3 3 chr3 9339794 9340092 -218184486 + AluSx SINE Alu 1 298 -14 185 310 17 17 chr3 9342365 9342423 -218182155 - L2 LINE L2 -26 3246 3189 190 296 19 0 chr3 9343330 9343384 -218181194 + L2 LINE L2 3210 3264 -8 36 62 0 0 chr3 9343434 9343498 -218181080 + AT_rich Low_complexity Low_complexity 1 64 0 289 281 31 31 chr3 9343508 9343604 -218180974 - MIR3 SINE MIR -26 182 87 1764 150 0 11 chr3 9343755 9344029 -218180549 + AluJb SINE Alu 1 271 -41 291 182 23 11 chr3 9344035 9344123 -218180455 + GA-rich Low_complexity Low_complexity 3 91 0 299 303 33 40 chr3 9344185 9344337 -218180241 - L2 LINE L2 -1034 2280 2130 2000 166 63 19 chr3 9344363 9344773 -218179805 - MSTC LTR MaLR 0 428 1 200 188 0 0 chr3 9345365 9345397 -218179181 + polypurine Low_complexity Low_complexity 4 35 0 1926 127 0 38 chr3 9345405 9345771 -218178807 + AluSx SINE Alu 11 365 0 950 288 82 63 chr3 9345879 9345996 -218178582 - MER34 LTR ERV1 0 542 429 1885 173 0 10 chr3 9345996 9346302 -218178276 - AluJb SINE Alu -7 305 3 950 288 82 63 chr3 9346302 9346711 -218177867 - MER34 LTR ERV1 -113 429 6 1435 193 62 94 chr3 9346905 9347130 -218177448 - MER34-int LTR ERV1 -165 6040 5809 2148 201 36 2 chr3 9347130 9347548 -218177030 - MSTB1 LTR MaLR 0 432 1 1435 193 62 94 chr3 9347548 9347940 -218176638 - MER34-int LTR ERV1 -396 5809 4190 1666 187 45 93 chr3 9347950 9348017 -218176561 - MER31-int LTR ERV1 -3609 1327 1258 2233 135 10 39 chr3 9348017 9348401 -218176177 + MER83C LTR ERV1 1 373 0 1666 187 45 93 chr3 9348401 9348905 -218175673 - MER31-int LTR ERV1 -3678 1258 783 2390 53 0 3 chr3 9349070 9349354 -218175224 + AluY SINE Alu 13 295 -16 207 0 0 0 chr3 9349901 9349924 -218174654 + (TTTTC)n Simple_repeat Simple_repeat 2 24 0 1834 131 7 7 chr3 9349925 9350199 -218174379 - AluSx SINE Alu -36 276 3 613 264 51 43 chr3 9350281 9350481 -218174097 - MER34 LTR ERV1 0 542 338 2848 177 91 56 chr3 9350481 9351183 -218173395 + LTR8A LTR ERV1 1 727 0 613 264 51 43 chr3 9351183 9351217 -218173361 - MER34 LTR ERV1 -204 338 306 488 259 76 19 chr3 9351266 9351424 -218173154 - MER34 LTR ERV1 -375 167 1 1817 215 60 115 chr3 9352164 9352954 -218171624 + LTR1B LTR ERV1 1 746 -80 23 54 0 0 chr3 9353331 9353368 -218171210 + AT_rich Low_complexity Low_complexity 1 37 0 658 254 78 15 chr3 9353742 9353947 -218170631 - MER20 DNA MER1_type 0 219 2 510 302 15 25 chr3 9354798 9355000 -218169578 + MLT1K LTR MaLR 380 579 -9 2384 107 0 3 chr3 9355323 9355632 -218168946 - AluSc SINE Alu -1 308 1 300 361 106 18 chr3 9355635 9355862 -218168716 - MLT1K LTR MaLR -158 430 184 409 253 140 27 chr3 9356242 9356428 -218168150 - MIR SINE MIR -13 249 43 251 194 113 0 chr3 9356504 9356566 -218168012 - MER94 DNA DNA -65 69 1 2458 184 38 35 chr3 9356632 9356966 -218167612 - L1MC2 LINE L1 -11 7770 7439 1922 160 0 26 chr3 9356966 9357279 -218167299 - AluSx SINE Alu -7 305 1 2458 184 38 35 chr3 9357279 9357534 -218167044 - L1MC2 LINE L1 -342 7439 6137 425 275 8 8 chr3 9357555 9357686 -218166892 - L1ME2 LINE L1 -12 6152 6022 715 184 0 27 chr3 9357968 9358115 -218166463 + FLAM_C SINE Alu 1 143 0 2128 234 74 34 chr3 9358744 9359518 -218165060 - L1ME1 LINE L1 -4 6231 5427 515 182 0 0 chr3 9359669 9359757 -218164821 + AluJ/FLAM SINE Alu 1 88 -224 27 0 0 0 chr3 9359823 9359850 -218164728 + AT_rich Low_complexity Low_complexity 1 27 0 661 231 30 10 chr3 9359854 9360053 -218164525 - L1MB8 LINE L1 -1 6177 5975 799 281 90 19 chr3 9360141 9360237 -218164341 - L1ME1 LINE L1 -2701 3514 3426 1697 180 7 3 chr3 9360237 9360531 -218164047 - AluSx SINE Alu -14 298 4 799 281 90 19 chr3 9360531 9361131 -218163447 - L1ME1 LINE L1 -2789 3426 2768 480 222 11 43 chr3 9361129 9361314 -218163264 - L1ME1 LINE L1 -5265 1131 953 * 239 133 67 0 chr3 9361338 9361383 -218163195 - MLT1E2 LTR MaLR -42 584 537 621 210 122 39 chr3 9361398 9361579 -218162999 - MLT1E2 LTR MaLR -369 257 62 434 322 95 57 chr3 9361674 9362450 -218162128 - L1ME1 LINE L1 -5554 842 37 251 289 12 0 chr3 9362852 9362935 -218161643 + MARNA DNA Mariner 448 531 -55 627 272 38 22 chr3 9363495 9363679 -218160899 + MIR SINE MIR 8 194 -68 187 382 11 0 chr3 9363685 9363774 -218160804 + MIR SINE MIR 172 261 -1 285 360 0 9 chr3 9363792 9363906 -218160672 + MIR SINE MIR 136 248 -14 789 95 0 0 chr3 9364142 9364258 -218160320 + (TCCCC)n Simple_repeat Simple_repeat 4 119 0 988 183 17 6 chr3 9364258 9364433 -218160145 - AluJb SINE Alu -20 292 116 366 330 98 71 chr3 9364764 9364936 -218159642 - MLT1K LTR MaLR -34 554 388 2295 115 0 0 chr3 9364936 9365232 -218159346 - AluSx SINE Alu -12 300 5 366 330 98 71 chr3 9365232 9365568 -218159010 - MLT1K LTR MaLR -200 388 32 214 345 0 35 chr3 9366177 9366264 -218158314 + MIR SINE MIR 104 187 -75 34 42 0 0 chr3 9366343 9366391 -218158187 + AT_rich Low_complexity Low_complexity 1 48 0 251 282 12 0 chr3 9366408 9366493 -218158085 - MLT1L LTR MaLR -13 602 517 280 333 89 37 chr3 9367807 9367942 -218156636 - L2 LINE L2 -6 3266 3125 299 301 63 63 chr3 9368454 9368660 -218155918 - MLT1K LTR MaLR -90 498 293 346 290 21 21 chr3 9368838 9368931 -218155647 + MER91B DNA MER1_type 97 189 -1 297 339 17 0 chr3 9368951 9369069 -218155509 - MLT1K LTR MaLR -319 269 150 252 0 0 0 chr3 9369126 9369154 -218155424 + (A)n Simple_repeat Simple_repeat 1 28 0 183 100 0 0 chr3 9369179 9369209 -218155369 + (CAA)n Simple_repeat Simple_repeat 2 31 0 404 319 8 0 chr3 9369349 9369468 -218155110 - MIR3 SINE MIR -23 185 66 181 161 0 54 chr3 9370708 9370764 -218153814 + GA-rich Low_complexity Low_complexity 1 53 0 277 318 16 8 chr3 9372754 9372880 -218151698 + CT-rich Low_complexity Low_complexity 2 128 0 353 310 0 0 chr3 9375945 9376032 -218148546 + MIR SINE MIR 50 136 -72 388 347 43 20 chr3 9376519 9376819 -218147759 + MLT1K LTR MaLR 200 506 -82 508 270 157 22 chr3 9377735 9377965 -218146613 - MIR SINE MIR 0 262 2 605 254 42 31 chr3 9378862 9379055 -218145523 + MIR SINE MIR 12 206 -56 285 29 0 0 chr3 9379261 9379295 -218145283 + (TCTA)n Simple_repeat Simple_repeat 4 37 0 248 174 0 14 chr3 9379296 9379365 -218145213 + GA-rich Low_complexity Low_complexity 1 68 0 210 288 76 68 chr3 9379482 9379600 -218144978 + MIR SINE MIR 16 134 -128 207 300 125 0 chr3 9379614 9379694 -218144884 - L2 LINE L2 -15 3298 3209 266 247 41 0 chr3 9379694 9379767 -218144811 + CT-rich Low_complexity Low_complexity 4 79 0 1431 271 106 37 chr3 9379771 9380638 -218143940 - L2 LINE L2 -94 3219 2295 197 288 0 0 chr3 9380648 9380707 -218143871 + MIR SINE MIR 134 192 -70 24 32 0 0 chr3 9381016 9381047 -218143531 + AT_rich Low_complexity Low_complexity 1 31 0 223 284 0 0 chr3 9382039 9382106 -218142472 + CT-rich Low_complexity Low_complexity 1 67 0 4967 44 7 2 chr3 9382160 9382774 -218141804 - L1PA7 LINE L1 -2 6152 5536 1987 107 10 17 chr3 9382774 9383065 -218141513 - AluSx SINE Alu -23 289 1 728 280 58 4 chr3 9383091 9383316 -218141262 + MIR SINE MIR 1 237 -25 630 292 67 17 chr3 9383677 9383917 -218140661 + MIR SINE MIR 5 256 -6 448 269 126 40 chr3 9384164 9384387 -218140191 - MIR SINE MIR -16 246 5 2354 109 22 11 chr3 9384975 9385332 -218139246 + THE1B LTR MaLR 1 361 -3 22 35 0 0 chr3 9385540 9385569 -218139009 + AT_rich Low_complexity Low_complexity 1 29 0 2158 122 0 0 chr3 9385678 9385974 -218138604 + AluSx SINE Alu 1 296 -16 2264 116 0 0 chr3 9386292 9386594 -218137984 - AluSx SINE Alu -10 302 1 234 172 103 17 chr3 9386797 9386855 -218137723 - L2 LINE L2 0 3313 3251 396 0 0 0 chr3 9387502 9387546 -218137032 + (CA)n Simple_repeat Simple_repeat 1 44 0 369 43 0 0 chr3 9388062 9388109 -218136469 + (TG)n Simple_repeat Simple_repeat 2 48 0 249 340 156 21 chr3 9388335 9388476 -218136102 - MER5A DNA MER1_type 0 189 30 735 211 149 0 chr3 9388480 9388641 -218135937 - MER5A DNA MER1_type 0 189 5 449 290 158 6 chr3 9388775 9388958 -218135620 - MIR SINE MIR -32 230 20 592 169 128 12 chr3 9388969 9389141 -218135437 - L1MA7 LINE L1 -2 6289 6098 196 267 0 33 chr3 9389208 9389268 -218135310 - L2 LINE L2 -218 3054 2997 26 74 0 0 chr3 9390584 9390638 -218133940 + AT_rich Low_complexity Low_complexity 1 54 0 3179 71 7 0 chr3 9390822 9391247 -218133331 - L1PA10 LINE L1 0 6168 5741 989 93 42 3 chr3 9391248 9391440 -218133138 + L1P4 LINE L1 5254 5430 -738 297 0 0 0 chr3 9391614 9391647 -218132931 + (TG)n Simple_repeat Simple_repeat 2 34 0 800 230 0 0 chr3 9392091 9392256 -218132322 + FRAM SINE Alu 1 164 -12 351 298 132 38 chr3 9392384 9392931 -218131647 - L1ME4a LINE L1 -204 5917 5320 35 78 0 0 chr3 9392953 9393030 -218131548 + AT_rich Low_complexity Low_complexity 1 77 0 374 253 24 0 chr3 9393964 9394047 -218130531 + L3 LINE CR1 1393 1477 -100 218 262 0 0 chr3 9394236 9394278 -218130300 + MIR SINE MIR 78 119 -89 2270 120 0 0 chr3 9394282 9394590 -218129988 - AluSg SINE Alu -2 308 1 2542 198 2 10 chr3 9394795 9395285 -218129293 - MER66B LTR ERV1 0 486 1 1158 161 55 0 chr3 9395642 9395788 -218128790 - L1MA9 LINE L1 -2 6310 6145 234 62 0 0 chr3 9395788 9395820 -218128758 + (TG)n Simple_repeat Simple_repeat 1 32 0 1158 161 55 0 chr3 9395820 9395909 -218128669 - L1MA9 LINE L1 -167 6145 6062 1675 93 4 39 chr3 9395945 9396202 -218128376 + L1PA6 LINE L1 5907 6154 0 249 33 0 0 chr3 9396463 9396493 -218128085 + (TAA)n Simple_repeat Simple_repeat 1 30 0 285 258 89 57 chr3 9396516 9396640 -218127938 - MIR SINE MIR -44 218 91 32510 38 0 0 chr3 9396925 9401837 -218122741 - L1PA3 LINE L1 -3 6152 1239 313 354 31 15 chr3 9401837 9401967 -218122611 + LTR67 LTR ERVL 110 241 -316 315 284 9 0 chr3 9402098 9402207 -218122371 + LTR67 LTR ERVL 435 544 -13 318 50 0 0 chr3 9402673 9402713 -218121865 + (ATG)n Simple_repeat Simple_repeat 2 41 0 206 338 188 6 chr3 9402722 9402882 -218121696 - MIR SINE MIR -10 252 64 336 200 0 0 chr3 9404225 9404305 -218120273 + (TA)n Simple_repeat Simple_repeat 2 81 0 441 287 54 0 chr3 9405154 9405283 -218119295 - MIR SINE MIR -68 194 59 802 209 70 0 chr3 9406940 9407112 -218117466 + MER5A DNA MER1_type 4 187 -2 300 258 281 6 chr3 9407143 9407321 -218117257 + MIR SINE MIR 34 260 -2 722 304 25 21 chr3 9407596 9407833 -218116745 - LTR33 LTR ERVL -239 282 45 625 179 172 13 chr3 9408391 9408542 -218116036 + FRAM SINE Alu 2 176 0 291 317 63 0 chr3 9408635 9408777 -218115801 + MIR SINE MIR 55 205 -57 267 336 69 8 chr3 9408839 9408970 -218115608 - MIR SINE MIR 0 262 124 206 360 0 20 chr3 9409510 9409610 -218114968 - MIR SINE MIR -66 142 45 2405 82 0 28 chr3 9411010 9411328 -218113250 + AluSc SINE Alu 1 309 0 235 258 45 0 chr3 9411444 9411533 -218113045 + T-rich Low_complexity Low_complexity 4 96 0 288 0 0 0 chr3 9412543 9412575 -218112003 + (CA)n Simple_repeat Simple_repeat 2 33 0 469 305 97 26 chr3 9413212 9413707 -218110871 - L1ME LINE L1 -378 5784 5255 510 298 94 12 chr3 9414003 9414174 -218110404 + MIR SINE MIR 11 195 -67 368 314 66 62 chr3 9414319 9414416 -218110162 - L1ME LINE L1 -1306 4840 4745 1388 227 14 7 chr3 9414416 9414711 -218109867 - AluJo SINE Alu -15 297 1 368 314 66 62 chr3 9414711 9415647 -218108931 - L1ME LINE L1 -1401 4745 3803 338 275 169 38 chr3 9415666 9415826 -218108752 - MLT1A1 LTR MaLR 0 549 369 21 0 0 0 chr3 9416512 9416533 -218108045 + AT_rich Low_complexity Low_complexity 1 21 0 877 163 0 6 chr3 9416544 9416710 -218107868 - L1MA10 LINE L1 -3 6331 6167 710 199 8 0 chr3 9416766 9416897 -218107681 - FLAM_C SINE Alu -1 132 1 207 350 48 10 chr3 9417168 9417271 -218107307 - MIR3 SINE MIR -1 207 101 322 336 28 28 chr3 9418152 9418295 -218106283 - MIR3 SINE MIR -61 147 5 260 363 44 0 chr3 9419130 9419243 -218105335 + L2 LINE L2 3155 3272 0 396 298 29 41 chr3 9419941 9420112 -218104466 - MLT1J2 LTR MaLR -3 447 279 474 252 9 0 chr3 9420313 9420424 -218104154 + FLAM_A SINE Alu 16 127 -15 217 299 13 0 chr3 9420916 9420993 -218103585 - L3b LINE CR1 -325 1258 1181 442 244 25 44 chr3 9421890 9422050 -218102528 + MER103 DNA DNA 8 164 -2 263 378 61 6 chr3 9422133 9422313 -218102265 - L3 LINE CR1 -13 1564 1375 2213 101 3 0 chr3 9424105 9424393 -218100185 - AluSg SINE Alu -21 289 1 314 308 140 0 chr3 9425810 9425917 -218098661 - L2 LINE L2 -1 3312 3191 1685 191 62 0 chr3 9426146 9426471 -218098107 - MLT1A1 LTR MaLR -20 345 1 602 262 107 5 chr3 9426737 9426924 -218097654 + MIR SINE MIR 56 261 -1 242 284 30 0 chr3 9427839 9427906 -218096672 - MIR SINE MIR -66 142 74 419 248 17 26 chr3 9428149 9428266 -218096312 + MIR SINE MIR 45 160 -102 264 305 0 0 chr3 9428279 9428338 -218096240 - L2 LINE L2 0 3272 3214 264 250 89 27 chr3 9428516 9428628 -218095950 + MIR SINE MIR 84 202 -60 1985 116 0 31 chr3 9428878 9429200 -218095378 - AluSx SINE Alu 0 313 1 24 32 0 0 chr3 9429453 9429484 -218095094 + AT_rich Low_complexity Low_complexity 1 31 0 1952 131 7 10 chr3 9429965 9430263 -218094315 + AluSx SINE Alu 1 297 -15 200 262 98 0 chr3 9431806 9431867 -218092711 - MIR SINE MIR -116 146 80 2084 142 3 0 chr3 9432696 9433007 -218091571 - AluSx SINE Alu 0 312 1 192 194 0 0 chr3 9433034 9433065 -218091513 + MIR SINE MIR 120 150 -58 281 339 34 17 chr3 9433686 9433804 -218090774 + MIR SINE MIR 34 143 -65 710 254 0 44 chr3 9434069 9434250 -218090328 + MER5B DNA MER1_type 1 173 -5 237 98 0 0 chr3 9435002 9435043 -218089535 + (TGAA)n Simple_repeat Simple_repeat 1 41 0 826 337 78 20 chr3 9435241 9435731 -218088847 - L3 LINE CR1 -3 1574 1057 21 57 0 0 chr3 9435823 9435858 -218088720 + AT_rich Low_complexity Low_complexity 1 35 0 320 284 35 30 chr3 9436425 9436594 -218087984 - L1ME LINE L1 -295 5826 5657 2079 127 0 0 chr3 9436838 9437114 -218087464 + AluSx SINE Alu 1 276 -36 752 18 9 28 chr3 9437122 9437231 -218087347 + (GAAA)n Simple_repeat Simple_repeat 2 108 0 616 284 60 18 chr3 9437354 9437685 -218086893 - L1ME4a LINE L1 -157 5964 5620 26 30 0 0 chr3 9438169 9438202 -218086376 + AT_rich Low_complexity Low_complexity 1 33 0 388 337 61 6 chr3 9439760 9439941 -218084637 + MIR SINE MIR 32 222 -40 274 294 25 68 chr3 9440856 9441019 -218083559 + MER117 DNA MER1_type 1 156 -41 342 302 40 16 chr3 9441397 9441523 -218083055 + L2 LINE L2 3158 3286 -27 210 300 0 0 chr3 9441563 9441613 -218082965 - L2 LINE L2 -82 3231 3182 2270 119 0 0 chr3 9442436 9442747 -218081831 - AluSx SINE Alu -1 311 1 211 302 157 34 chr3 9444305 9444573 -218080005 - L2 LINE L2 -630 2684 2384 281 278 26 26 chr3 9444628 9444743 -218079835 - MER103 DNA DNA -46 120 6 1932 232 58 109 chr3 9445181 9445350 -218079228 + LTR41 LTR ERVL 1 177 -596 2062 108 0 51 chr3 9445350 9445701 -218078877 - AluSx SINE Alu 0 312 1 1932 232 58 109 chr3 9445701 9446337 -218078241 + LTR41 LTR ERVL 177 765 -8 328 223 28 137 chr3 9446431 9446642 -218077936 - L1ME LINE L1 -296 5825 5638 471 332 55 14 chr3 9447546 9447766 -218076812 - MIR SINE MIR 0 262 34 24 32 0 0 chr3 9449768 9449799 -218074779 + AT_rich Low_complexity Low_complexity 1 31 0 2177 103 0 0 chr3 9449800 9450082 -218074496 - AluSc SINE Alu -27 282 1 269 246 0 0 chr3 9451407 9451476 -218073102 + (TTCA)n Simple_repeat Simple_repeat 4 72 0 216 269 58 39 chr3 9451867 9451971 -218072607 + MIR SINE MIR 108 213 -49 408 200 36 9 chr3 9451971 9452081 -218072497 - L1MA10 LINE L1 -3 6331 6219 5108 250 63 21 chr3 9452192 9454768 -218069810 - L1ME1 LINE L1 -281 5954 3277 * 41320 44 5 2 chr3 9454747 9460883 -218063695 - L1PA4 LINE L1 0 6224 70 2197 219 139 16 chr3 9460882 9461714 -218062864 - L1ME1 LINE L1 -2897 3318 2384 * 340 113 0 0 chr3 9461720 9461782 -218062796 - L1ME1 LINE L1 -4143 2253 2192 1886 262 74 15 chr3 9461788 9462395 -218062183 - L1ME1 LINE L1 -5649 747 96 188 0 0 69 chr3 9462395 9462424 -218062154 + (TTTTG)n Simple_repeat Simple_repeat 2 28 0 1886 262 74 15 chr3 9462424 9462480 -218062098 - L1ME1 LINE L1 -6300 96 45 425 350 48 27 chr3 9462701 9463032 -218061546 - MLT1J2 LTR MaLR 0 450 113 288 250 0 24 chr3 9463547 9463631 -218060947 + MIR SINE MIR 166 247 -15 1065 144 18 1 chr3 9463831 9464081 -218060497 - L1MA4A LINE L1 -56 6247 6014 412 308 151 0 chr3 9464341 9464526 -218060052 + MIR SINE MIR 50 262 0 239 250 65 28 chr3 9464627 9464735 -218059843 + MIR SINE MIR 113 224 -38 186 43 0 0 chr3 9464861 9464884 -218059694 + (CAAAA)n Simple_repeat Simple_repeat 1 23 0 2117 111 7 3 chr3 9464946 9465244 -218059334 + AluSx SINE Alu 1 299 -13 1885 171 3 0 chr3 9465255 9465548 -218059030 + AluSg SINE Alu 1 294 -16 191 365 24 0 chr3 9467457 9467542 -218057036 - L2 LINE L2 -47 3225 3139 225 287 98 0 chr3 9467689 9467704 -218056874 - L1MA10 LINE L1 -3 6331 6317 911 233 93 85 chr3 9467704 9467760 -218056818 - L1ME2 LINE L1 -8 6154 6100 198 103 0 0 chr3 9467760 9467789 -218056789 + (TG)n Simple_repeat Simple_repeat 2 30 0 911 233 93 85 chr3 9467789 9468259 -218056319 - L1ME2 LINE L1 -62 6100 5617 446 284 57 7 chr3 9468785 9468926 -218055652 - MIR SINE MIR -18 244 97 24 0 0 0 chr3 9469015 9469039 -218055539 + AT_rich Low_complexity Low_complexity 1 24 0 2356 320 127 25 chr3 9470105 9471757 -218052821 + L2 LINE L2 47 1865 -1449 190 289 134 35 chr3 9471845 9471987 -218052591 + L2 LINE L2 3158 3313 0 423 250 62 0 chr3 9472334 9472446 -218052132 - MIR SINE MIR -142 120 2 608 197 142 0 chr3 9473173 9473300 -218051278 + FRAM SINE Alu 2 146 -30 403 211 65 16 chr3 9473361 9473484 -218051094 + MER104 DNA Tc2 40 168 -12 1064 190 23 31 chr3 9473857 9474115 -218050463 - MLT1A1 LTR MaLR 0 365 110 1968 138 0 52 chr3 9475002 9475327 -218049251 - AluJb SINE Alu -4 308 1 195 379 35 0 chr3 9475718 9475805 -218048773 + L3 LINE CR1 1468 1557 -20 438 298 61 33 chr3 9476500 9476681 -218047897 + MIR SINE MIR 12 197 -65 246 83 0 0 chr3 9476744 9476780 -218047798 - Alu SINE Alu -94 81 46 1769 173 3 22 chr3 9476869 9477187 -218047391 - AluJo SINE Alu 0 312 1 220 167 0 0 chr3 9477508 9477550 -218047028 + MER5B DNA MER1_type 1 42 -136 1401 211 82 39 chr3 9477715 9478155 -218046423 - MLT1C LTR MaLR -8 459 1 283 272 37 0 chr3 9478166 9478247 -218046331 + MIR SINE MIR 130 213 -49 375 248 20 0 chr3 9478568 9478669 -218045909 - Charlie8 DNA MER1_type -2227 190 88 535 262 0 14 chr3 9478686 9478831 -218045747 - MER63 DNA MER1_type -289 773 5 310 294 54 76 chr3 9479010 9479212 -218045366 - MIR SINE MIR -56 206 5 250 185 0 0 chr3 9480081 9480135 -218044443 + L1MC4 LINE L1 7986 8039 -3 23 54 0 0 chr3 9480170 9480207 -218044371 + AT_rich Low_complexity Low_complexity 1 37 0 659 326 83 42 chr3 9480213 9480390 -218044188 - L2 LINE L2 -511 2803 2635 2384 42 0 11 chr3 9480390 9480707 -218043871 + AluY SINE Alu 1 314 0 659 326 83 42 chr3 9480707 9480865 -218043713 - L2 LINE L2 -679 2635 2453 23 0 0 0 chr3 9480866 9480889 -218043689 + AT_rich Low_complexity Low_complexity 1 23 0 235 204 0 0 chr3 9481006 9481060 -218043518 - L1MC4 LINE L1 -3 8039 7986 559 289 17 8 chr3 9481061 9481296 -218043282 - L1MC4 LINE L1 -141 7901 7665 367 340 102 12 chr3 9482295 9482627 -218041951 - LTR16A LTR ERVL -88 362 1 259 359 90 12 chr3 9482662 9482829 -218041749 + MIR SINE MIR 22 201 -61 309 135 0 0 chr3 9482883 9482935 -218041643 + (TTA)n Simple_repeat Simple_repeat 3 54 0 291 291 60 82 chr3 9482971 9483105 -218041473 - L2 LINE L2 -1 3312 3182 234 189 0 84 chr3 9483107 9483202 -218041376 - L1MC4 LINE L1 -1347 6695 6609 2984 310 76 32 chr3 9483203 9484971 -218039607 - L2 LINE L2 -149 3164 1307 242 333 51 51 chr3 9485074 9485191 -218039387 + MIR3 SINE MIR 44 160 -48 260 157 8 164 chr3 9485230 9485364 -218039214 + MER112 DNA MER1_type 45 157 -103 239 274 95 0 chr3 9485676 9485771 -218038807 + MER102b DNA MER1_type 80 183 -158 238 276 0 31 chr3 9485771 9485869 -218038709 + MER102b DNA MER1_type 247 341 0 300 111 0 0 chr3 9487043 9487097 -218037481 + (TG)n Simple_repeat Simple_repeat 2 55 0 744 249 57 75 chr3 9487671 9488145 -218036433 + MLT1C LTR MaLR 6 626 0 468 118 13 0 chr3 9489419 9489495 -218035083 + MADE1 DNA Mariner 4 80 0 213 180 0 0 chr3 9489808 9489858 -218034720 + CT-rich Low_complexity Low_complexity 3 52 0 4138 142 7 7 chr3 9491387 9492086 -218032492 + L1PA16 LINE L1 5392 6090 -76 1333 272 49 32 chr3 9492210 9492703 -218031875 - L1ME1 LINE L1 -44 6122 5622 2536 96 53 2 chr3 9494771 9495165 -218029413 - L1MA1 LINE L1 0 6302 5889 352 317 49 28 chr3 9495257 9495399 -218029179 - MIR3 SINE MIR -63 145 1 610 187 0 0 chr3 9495628 9495751 -218028827 - L1M3 LINE L1 -677 5491 5369 1422 138 6 99 chr3 9495751 9496085 -218028493 + L1MA10 LINE L1 6018 6320 -14 304 311 82 8 chr3 9496517 9496639 -218027939 + L2 LINE L2 3141 3271 -1 230 317 20 20 chr3 9496744 9496845 -218027733 + CT-rich Low_complexity Low_complexity 3 103 0 752 290 143 35 chr3 9496928 9497569 -218027009 - L2 LINE L2 -32 3281 2563 2367 61 0 42 chr3 9497688 9498001 -218026577 - AluY SINE Alu -11 300 1 241 254 56 0 chr3 9498680 9498751 -218025827 + MER103 DNA DNA 26 100 -66 184 333 51 26 chr3 9499042 9499120 -218025458 - MIR SINE MIR -113 149 70 393 315 112 44 chr3 9499338 9499589 -218024989 + L3 LINE CR1 787 1054 -523 835 196 0 0 chr3 9500615 9500763 -218023815 + FRAM SINE Alu 1 148 -28 249 108 0 0 chr3 9500765 9500802 -218023776 + (CATA)n Simple_repeat Simple_repeat 1 37 0 1621 140 42 30 chr3 9501313 9501649 -218022929 - L1MA9 LINE L1 0 6312 5973 829 309 64 40 chr3 9502154 9502655 -218021923 - LTR33 LTR ERVL -2 519 7 * 2218 112 27 25 chr3 9502652 9503018 -218021560 - THE1C LTR MaLR -8 367 1 324 339 97 27 chr3 9503321 9503507 -218021071 - L2 LINE L2 -643 2671 2473 227 333 43 0 chr3 9504635 9504728 -218019850 + MLT1I LTR MaLR 55 151 -258 831 250 4 44 chr3 9504900 9505128 -218019450 - MER58A DNA MER1_type -5 219 1 268 161 81 16 chr3 9505128 9505188 -218019390 + MLT1I LTR MaLR 342 405 -4 1977 141 0 0 chr3 9505750 9506040 -218018538 - AluY SINE Alu -21 290 1 2536 121 5 3 chr3 9506985 9507357 -218017221 - THE1C LTR MaLR 0 375 3 9413 119 40 48 chr3 9507359 9507550 -218017028 - THE1C-int LTR MaLR 0 1580 1389 2055 121 3 0 chr3 9507550 9507832 -218016746 + AluSq SINE Alu 21 303 -10 9413 119 40 48 chr3 9507832 9509234 -218015344 - THE1C-int LTR MaLR -191 1389 1 2506 106 3 5 chr3 9509237 9509606 -218014972 - THE1C LTR MaLR -7 368 1 1983 144 34 0 chr3 9509861 9510031 -218014547 - AluSx SINE Alu -9 303 117 201 39 0 0 chr3 9510031 9510057 -218014521 + (TTTTA)n Simple_repeat Simple_repeat 2 27 0 1983 144 34 0 chr3 9510057 9510177 -218014401 - AluSx SINE Alu -195 117 3 451 309 121 12 chr3 9510305 9510554 -218014024 - MLT1I LTR MaLR -28 381 106 1321 167 0 26 chr3 9510842 9511069 -218013509 + AluJb SINE Alu 87 307 -5 312 273 11 23 chr3 9512198 9512286 -218012292 - L2 LINE L2 -21 3292 3206 3687 165 14 26 chr3 9512315 9513085 -218011493 + L1MA7 LINE L1 5530 6290 -1 1669 275 29 13 chr3 9513437 9513961 -218010617 - MLT1F LTR MaLR -10 532 1 350 302 213 22 chr3 9515538 9515763 -218008815 - MLT1K LTR MaLR -287 301 34 320 329 27 32 chr3 9516811 9517001 -218007577 + MIR SINE MIR 2 190 -55 215 259 49 25 chr3 9518602 9518683 -218005895 + MIR SINE MIR 124 206 -56 247 258 75 33 chr3 9518746 9518866 -218005712 - L3b LINE CR1 -171 1412 1288 408 258 158 0 chr3 9518970 9519134 -218005444 - MIR SINE MIR -10 252 63 959 174 14 126 chr3 9519743 9519861 -218004717 - MER31A LTR ERV1 -135 350 220 1781 161 0 20 chr3 9519861 9520159 -218004419 + AluSx SINE Alu 1 292 -20 959 174 14 126 chr3 9520159 9520436 -218004142 - MER31A LTR ERV1 -265 220 11 438 332 24 67 chr3 9520690 9520943 -218003635 + MIR SINE MIR 6 247 -15 595 210 93 122 chr3 9522130 9522442 -218002136 + MER39 LTR ERV1 1 272 -293 1490 228 7 0 chr3 9522442 9522732 -218001846 - AluJo SINE Alu -20 292 1 595 210 93 122 chr3 9522732 9523013 -218001565 + MER39 LTR ERV1 272 560 -5 457 200 104 7 chr3 9523017 9523152 -218001426 - L1MC5 LINE L1 -102 7859 7712 23 0 0 0 chr3 9523196 9523219 -218001359 + AT_rich Low_complexity Low_complexity 1 23 0 530 145 8 113 chr3 9523332 9523456 -218001122 + FLAM_A SINE Alu 6 116 -26 280 231 53 91 chr3 9523486 9523750 -218000828 - L1MC5 LINE L1 -419 7542 7289 182 36 0 36 chr3 9524009 9524037 -218000541 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 1733 137 99 4 chr3 9524045 9524308 -218000270 - AluSx SINE Alu -24 288 1 274 326 139 0 chr3 9524388 9524474 -218000104 + L2 LINE L2 3121 3218 -54 1555 95 110 215 chr3 9524497 9525033 -217999545 + LTR12 LTR ERV1 1 480 -234 247 270 0 0 chr3 9525056 9525119 -217999459 + (TGAA)n Simple_repeat Simple_repeat 4 66 0 2199 226 78 4 chr3 9525173 9525700 -217998878 - MLT1F1 LTR MaLR -1 566 1 281 343 0 40 chr3 9525816 9525915 -217998663 + MIR SINE MIR 47 141 -67 1732 193 88 19 chr3 9525916 9526347 -217998231 - LOR1b LTR ERV1 0 461 1 411 268 168 11 chr3 9526389 9526579 -217997999 - MIR SINE MIR 0 262 43 381 311 155 0 chr3 9526613 9526774 -217997804 + MER5A DNA MER1_type 4 189 0 492 254 34 40 chr3 9527302 9527479 -217997099 - MER5B DNA MER1_type -2 176 1 867 172 63 34 chr3 9527714 9527982 -217996596 - MER33 DNA MER1_type -1 323 48 2054 127 0 3 chr3 9528507 9528799 -217995779 + AluSx SINE Alu 1 291 -21 1386 160 43 0 chr3 9528913 9529169 -217995409 - L1MC1 LINE L1 -92 6241 5975 1160 102 25 0 chr3 9529682 9529839 -217994739 - AluSc SINE Alu -148 161 1 1050 148 0 6 chr3 9529913 9530096 -217994482 + L1MC1 LINE L1 5860 6041 -292 194 276 150 39 chr3 9530155 9530282 -217994296 - MER5A DNA MER1_type 0 189 49 202 369 15 0 chr3 9531463 9531528 -217993050 - L2 LINE L2 0 3272 3207 1819 170 10 0 chr3 9531738 9532038 -217992540 + AluJb SINE Alu 1 303 -9 228 67 0 0 chr3 9532049 9532079 -217992499 + (CA)n Simple_repeat Simple_repeat 2 31 0 756 175 37 78 chr3 9532200 9532417 -217992161 - ORSL DNA AcHobo -44 231 24 2072 200 138 30 chr3 9532472 9533182 -217991396 - LTR48 LTR ERV1 0 787 1 600 257 137 8 chr3 9533202 9533500 -217991078 - MLT1C LTR MaLR -6 461 59 1623 205 58 60 chr3 9534543 9535045 -217989533 - MLT1D LTR MaLR -2 503 3 200 375 81 21 chr3 9536560 9536795 -217987783 + L2 LINE L2 2806 3054 -218 261 325 66 13 chr3 9536983 9537134 -217987444 + Charlie8 DNA MER1_type 96 254 -2163 294 255 142 9 chr3 9537765 9537871 -217986707 + L2 LINE L2 3138 3257 -15 595 207 67 56 chr3 9538193 9538372 -217986206 + L1MEc LINE L1 44 224 -6172 1761 239 27 35 chr3 9538375 9538603 -217985975 + L1ME1 LINE L1 5371 5599 -579 3238 163 28 36 chr3 9538603 9538714 -217985864 + L1MB3 LINE L1 5513 5623 -560 2223 136 7 0 chr3 9538714 9539024 -217985554 + AluSx SINE Alu 1 312 0 3238 163 28 36 chr3 9539024 9539586 -217984992 + L1MB3 LINE L1 5623 6181 -2 1761 239 27 35 chr3 9539586 9540208 -217984370 + L1ME1 LINE L1 5599 6177 -1 1682 46 0 41 chr3 9541079 9541323 -217983255 - AluY SINE Alu 0 311 87 284 237 40 26 chr3 9541476 9541552 -217983026 + L2 LINE L2 3179 3255 -17 328 253 61 0 chr3 9542066 9542165 -217982413 + MIR SINE MIR 158 262 0 189 294 199 41 chr3 9542430 9542576 -217982002 - MIR3 SINE MIR -10 198 30 1412 219 68 21 chr3 9542619 9543002 -217981576 - MLT1C LTR MaLR -2 465 65 26 50 0 0 chr3 9543052 9543092 -217981486 + AT_rich Low_complexity Low_complexity 1 40 0 484 252 18 0 chr3 9543401 9543512 -217981066 - MER81 DNA DNA -1 113 1 277 303 50 82 chr3 9543881 9544071 -217980507 - MER5B DNA MER1_type -5 173 1 221 100 50 0 chr3 9544213 9544253 -217980325 + (CATA)n Simple_repeat Simple_repeat 2 43 0 556 280 42 26 chr3 9545597 9545790 -217978788 - MIR SINE MIR -8 254 59 22 0 0 0 chr3 9546389 9546411 -217978167 + AT_rich Low_complexity Low_complexity 1 22 0 273 152 0 0 chr3 9546952 9546998 -217977580 + MADE1 DNA Mariner 1 46 -34 690 266 138 9 chr3 9547017 9547235 -217977343 + MIR SINE MIR 17 262 0 237 224 12 106 chr3 9548419 9548504 -217976074 - MIR SINE MIR -97 165 89 21 0 0 0 chr3 9548548 9548569 -217976009 + AT_rich Low_complexity Low_complexity 1 21 0 814 218 63 11 chr3 9548599 9548773 -217975805 + MER5A DNA MER1_type 7 189 0 21 0 0 0 chr3 9549040 9549061 -217975517 + AT_rich Low_complexity Low_complexity 1 21 0 183 340 0 0 chr3 9549660 9549707 -217974871 + L2 LINE L2 3223 3269 -3 2214 105 0 3 chr3 9550001 9550295 -217974283 - AluY SINE Alu -18 293 1 332 283 22 0 chr3 9550375 9550467 -217974111 + MER5A DNA MER1_type 13 106 -83 1978 140 13 3 chr3 9550493 9550793 -217973785 + AluJb SINE Alu 1 303 -9 1213 244 53 28 chr3 9550911 9551345 -217973233 - L1ME1 LINE L1 -96 6070 5626 2627 204 51 45 chr3 9551352 9552111 -217972467 + MER21B LTR ERV1 1 857 -6 2864 250 72 35 chr3 9552170 9553312 -217971266 - L1MEc LINE L1 -5176 1220 37 255 293 27 0 chr3 9553454 9553529 -217971049 - L3 LINE CR1 -681 896 820 646 176 9 0 chr3 9553561 9553669 -217970909 - FLAM_A SINE Alu -32 110 2 472 313 178 29 chr3 9553671 9554019 -217970559 - L3 LINE CR1 -747 830 431 3233 210 35 26 chr3 9555130 9555964 -217968614 - L1MA9 LINE L1 -208 6104 5264 648 230 51 55 chr3 9556777 9556994 -217967584 + MER58A DNA MER1_type 1 216 -8 418 347 7 0 chr3 9557125 9557272 -217967306 - MIR3 SINE MIR -40 168 21 21 36 0 0 chr3 9557987 9558015 -217966563 + AT_rich Low_complexity Low_complexity 1 28 0 1340 139 139 46 chr3 9558285 9558608 -217965970 - L1MA8 LINE L1 -1 6290 5938 190 231 0 0 chr3 9558803 9558842 -217965736 - L2 LINE L2 -5 3308 3270 1957 158 49 6 chr3 9558906 9559255 -217965323 - THE1B LTR MaLR 0 364 1 194 264 14 111 chr3 9559443 9559587 -217964991 - L2 LINE L2 -287 3026 2897 278 306 75 50 chr3 9559644 9559804 -217964774 - L2 LINE L2 -527 2787 2624 212 300 125 17 chr3 9560046 9560174 -217964404 - MIR SINE MIR -63 145 11 29 70 0 0 chr3 9560702 9560759 -217963819 + AT_rich Low_complexity Low_complexity 1 57 0 25 31 0 0 chr3 9561631 9561663 -217962915 + AT_rich Low_complexity Low_complexity 1 32 0 2536 239 85 27 chr3 9562086 9563853 -217960725 - L1ME1 LINE L1 -4 6231 4367 286 169 68 40 chr3 9563943 9564091 -217960487 + (ATATG)n Simple_repeat Simple_repeat 3 154 0 608 234 92 35 chr3 9564114 9564396 -217960182 - L1ME1 LINE L1 -1968 4247 3950 293 80 0 20 chr3 9564405 9564455 -217960123 + (TC)n Simple_repeat Simple_repeat 2 50 0 400 307 28 39 chr3 9564488 9564667 -217959911 - L1ME1 LINE L1 -6040 356 180 276 30 0 0 chr3 9565147 9565170 -217959408 + (TG)n Simple_repeat Simple_repeat 1 56 0 276 30 0 0 chr3 9565170 9565203 -217959375 + (TG)n Simple_repeat Simple_repeat 2 34 0 1786 175 0 0 chr3 9565228 9565513 -217959065 - AluSx SINE Alu -27 285 1 4562 62 10 0 chr3 9568275 9568860 -217955718 - LTR10C LTR ERV1 0 591 1 1674 209 11 15 chr3 9569283 9569658 -217954920 + MLT1A1 LTR MaLR 3 359 -6 382 320 128 45 chr3 9570032 9570369 -217954209 + MLT1J2 LTR MaLR 80 444 -6 573 244 124 10 chr3 9570989 9571190 -217953388 - MIR SINE MIR -2 260 37 300 308 75 38 chr3 9571423 9571582 -217952996 - MIR SINE MIR -51 211 47 752 134 0 47 chr3 9571654 9571781 -217952797 + HERVK LTR ERVK 5384 5504 -1739 310 109 36 18 chr3 9571771 9571826 -217952752 + Harlequin LTR ERV1 557 612 -6284 * 21 0 0 0 chr3 9573165 9573186 -217951392 + AT_rich Low_complexity Low_complexity 1 21 0 475 289 69 23 chr3 9573564 9573737 -217950841 - MLT1J1 LTR MaLR -2 444 264 230 28 0 56 chr3 9573750 9573786 -217950792 + (TTTTA)n Simple_repeat Simple_repeat 5 38 0 2007 143 19 19 chr3 9573793 9574156 -217950422 - L1PB1 LINE L1 -8 6143 5781 310 308 0 11 chr3 9574160 9574251 -217950327 - L1MC4 LINE L1 -1339 6703 6614 4165 158 8 1 chr3 9574252 9575513 -217949065 - L1P5 LINE L1 -360 5791 4523 7741 207 12 6 chr3 9575513 9577242 -217947336 + L1P5 LINE L1 2777 4514 -1632 644 348 43 3 chr3 9577242 9577524 -217947054 - MLT1J1 LTR MaLR -153 293 1 351 335 48 44 chr3 9578467 9578715 -217945863 - MLT1K LTR MaLR -14 574 326 26 30 0 0 chr3 9578745 9578778 -217945800 + AT_rich Low_complexity Low_complexity 1 33 0 1293 269 81 9 chr3 9578790 9579225 -217945353 - LTR33 LTR ERVL -19 502 37 183 366 0 14 chr3 9579767 9579838 -217944740 + L2 LINE L2 3201 3270 -2 22 35 0 0 chr3 9581461 9581490 -217943088 + AT_rich Low_complexity Low_complexity 1 29 0 1731 156 3 26 chr3 9582092 9582399 -217942179 + AluJb SINE Alu 1 300 -12 23 33 0 0 chr3 9583767 9583797 -217940781 + AT_rich Low_complexity Low_complexity 1 30 0 400 287 147 7 chr3 9583832 9583982 -217940596 - MIR SINE MIR -44 218 48 838 246 88 24 chr3 9584136 9584433 -217940145