201 219 31 0 chr21 10000427 10000491 -34907079 + (TA)n Simple_repeat Simple_repeat 1 66 0 837 58 117 0 chr21 10001071 10001191 -34906379 + MER85 DNA T2_type 4 137 -2 2853 185 47 7 chr21 10002915 10003509 -34904061 - MER54A LTR ERVL 0 901 284 931 107 0 0 chr21 10003509 10003630 -34903940 + FRAM SINE Alu 28 148 -28 1990 145 14 0 chr21 10004278 10004568 -34903002 - AluSx SINE Alu -18 294 1 2277 101 17 0 chr21 10004620 10004918 -34902652 - AluSc SINE Alu -6 303 1 21 0 0 0 chr21 10004982 10005003 -34902567 + AT_rich Low_complexity Low_complexity 1 21 0 2357 109 3 0 chr21 10005702 10006014 -34901556 + AluSp SINE Alu 1 313 0 724 194 0 2 chr21 10006037 10006293 -34901277 + AluJ SINE Alu 2 310 -2 285 29 0 0 chr21 10006307 10006341 -34901229 + (CTAA)n Simple_repeat Simple_repeat 3 36 0 301 232 143 9 chr21 10006589 10006701 -34900869 - MIR SINE MIR -55 207 81 604 316 16 5 chr21 10007495 10007682 -34899888 + MER5A DNA MER1_type 1 189 0 2295 125 0 0 chr21 10008426 10008738 -34898832 + AluSx SINE Alu 1 312 0 275 292 21 10 chr21 10008966 10009062 -34898508 - L3b LINE CR1 -362 1221 1125 2012 123 0 0 chr21 10010808 10011085 -34896485 + AluSx SINE Alu 11 287 -25 225 0 0 0 chr21 10011088 10011113 -34896457 + (CAAAA)n Simple_repeat Simple_repeat 2 26 0 243 0 0 0 chr21 10012159 10012186 -34895384 + (TTTTG)n Simple_repeat Simple_repeat 3 29 0 401 248 80 24 chr21 10012447 10012572 -34894998 + MIR SINE MIR 89 220 -42 566 224 66 86 chr21 10012572 10012979 -34894591 + L1MC5 LINE L1 7405 7803 -158 205 291 105 12 chr21 10013154 10013240 -34894330 + MIR SINE MIR 148 241 -21 252 0 0 0 chr21 10013307 10013335 -34894235 + (CA)n Simple_repeat Simple_repeat 2 29 0 183 42 0 0 chr21 10013955 10013979 -34893591 + (TTTG)n Simple_repeat Simple_repeat 1 24 0 1930 122 0 11 chr21 10013982 10014261 -34893309 - AluSx SINE Alu -36 276 1 482 278 16 42 chr21 10014321 10014512 -34893058 - MIR3 SINE MIR 0 208 23 370 279 9 9 chr21 10014615 10014726 -34892844 + MER112 DNA MER1_type 142 252 -8 622 170 119 6 chr21 10015257 10015416 -34892154 - MER96B DNA MER1_type? -238 179 3 580 177 0 0 chr21 10015763 10015859 -34891711 - AluSg/x SINE Alu -13 297 202 425 336 93 15 chr21 10015870 10016194 -34891376 + L1M4 LINE L1 3479 3827 -2319 2365 148 15 10 chr21 10016195 10016601 -34890969 + L1PA15-16 LINE L1 5 412 -6437 6455 122 33 10 chr21 10016609 10017761 -34889809 + L1PA15-16 LINE L1 1307 2484 -4365 745 164 138 48 chr21 10017760 10017991 -34889579 + L1P LINE L1 3756 4007 -2139 * 2322 104 3 0 chr21 10017992 10018289 -34889281 + AluSx SINE Alu 1 298 -14 2453 86 0 0 chr21 10018291 10018594 -34888976 + AluSq SINE Alu 1 303 -10 1700 164 22 3 chr21 10018594 10018906 -34888664 + L1PA16 LINE L1 5828 6145 -21 657 280 46 24 chr21 10018980 10019309 -34888261 + L1M4 LINE L1 3816 4151 -1995 3444 257 104 43 chr21 10019566 10020881 -34886689 + L1ME LINE L1 2640 3874 -2288 1982 142 10 6 chr21 10020881 10021192 -34886378 - AluSx SINE Alu 0 312 1 3444 257 104 43 chr21 10021192 10021225 -34886345 + L1ME LINE L1 3874 3904 -2258 324 0 0 0 chr21 10021225 10021261 -34886309 + (CA)n Simple_repeat Simple_repeat 2 37 0 3444 257 104 43 chr21 10021261 10021496 -34886074 + L1ME LINE L1 3904 4123 -2039 1893 147 7 26 chr21 10021496 10021803 -34885767 + AluJb SINE Alu 1 301 -11 3444 257 104 43 chr21 10021803 10023108 -34884462 + L1ME LINE L1 4123 5712 -450 2079 140 3 0 chr21 10023108 10023408 -34884162 + AluSx SINE Alu 1 301 -11 3444 257 104 43 chr21 10023408 10023448 -34884122 + L1ME LINE L1 5712 5748 -414 379 258 19 7 chr21 10023577 10023732 -34883838 + L1M4 LINE L1 4536 4692 -1454 403 268 70 83 chr21 10023927 10024108 -34883462 + L1M4 LINE L1 4990 5167 -979 1971 152 0 7 chr21 10024108 10024405 -34883165 + AluJb SINE Alu 3 297 -15 403 268 70 83 chr21 10024405 10024537 -34883033 + L1M4 LINE L1 5167 5299 -847 343 169 26 13 chr21 10024833 10024910 -34882660 - MER116 DNA Mariner 0 80 3 5313 139 42 34 chr21 10025413 10026644 -34880926 + L1MA8 LINE L1 4774 6024 -267 1592 124 124 16 chr21 10026644 10026901 -34880669 - AluSg1 SINE Alu -24 285 1 5313 139 42 34 chr21 10026901 10027172 -34880398 + L1MA8 LINE L1 6024 6291 0 322 313 20 0 chr21 10027303 10027402 -34880168 + CT-rich Low_complexity Low_complexity 2 102 0 426 39 0 0 chr21 10029263 10029315 -34878255 + (TA)n Simple_repeat Simple_repeat 1 52 0 3100 93 38 23 chr21 10029916 10030441 -34877129 - L1P4 LINE L1 -387 5787 5255 4264 230 32 25 chr21 10030456 10031641 -34875929 - L1PA12 LINE L1 -6379 1202 10 897 255 24 18 chr21 10032095 10032354 -34875216 + MLT1H LTR MaLR 1 301 -248 1492 103 34 0 chr21 10032422 10032656 -34874914 - L1MA5 LINE L1 -3 6297 6056 3091 190 15 31 chr21 10032663 10033663 -34873907 - L1 LINE L1 -3529 3679 2693 1951 156 3 7 chr21 10033663 10033970 -34873600 - AluSx SINE Alu -3 309 4 3091 190 15 31 chr21 10033970 10034089 -34873481 - L1 LINE L1 -4515 2693 2574 1915 167 10 0 chr21 10034120 10034413 -34873157 - AluSx SINE Alu -14 298 3 2227 243 46 57 chr21 10034414 10035209 -34872361 - L1 LINE L1 -4865 2344 1516 562 184 6 113 chr21 10035263 10035431 -34872139 + MLT1H LTR MaLR 378 527 -22 737 171 19 171 chr21 10036775 10037033 -34870537 + MER20 DNA MER1_type 1 219 0 676 224 33 77 chr21 10037294 10037477 -34870093 - MER5A DNA MER1_type -1 188 14 371 136 61 0 chr21 10037968 10038034 -34869536 - U2 snRNA snRNA -118 70 1 8129 148 21 23 chr21 10038733 10039145 -34868425 - L1MA2 LINE L1 -72 7651 7240 2473 80 0 0 chr21 10039145 10039446 -34868124 - AluSp SINE Alu -12 301 1 8129 148 21 23 chr21 10039446 10041605 -34865965 - L1MA2 LINE L1 -483 7240 5091 2165 134 0 0 chr21 10041607 10041913 -34865657 - AluSx SINE Alu -6 306 1 13779 132 29 14 chr21 10041923 10041966 -34865604 - L1MA2 LINE L1 -3890 3675 3634 2224 110 0 0 chr21 10041966 10042265 -34865305 - AluSc SINE Alu -8 301 3 13779 132 29 14 chr21 10042265 10044612 -34862958 - L1MA2 LINE L1 -3931 3634 1249 2014 113 0 0 chr21 10044631 10044897 -34862673 - AluSg SINE Alu -12 298 33 267 31 0 0 chr21 10045114 10045146 -34862424 + (TAAA)n Simple_repeat Simple_repeat 2 33 0 216 67 0 0 chr21 10046195 10046225 -34861345 + (TA)n Simple_repeat Simple_repeat 2 31 0 2215 131 0 0 chr21 10046237 10046549 -34861021 - AluSx SINE Alu 0 312 1 5813 94 12 16 chr21 10047568 10048401 -34859169 + L1PA14 LINE L1 5332 6161 0 408 309 55 10 chr21 10048842 10049043 -34858527 + HAL1b LINE L1 466 675 -673 7825 44 1 1 chr21 10049048 10050098 -34857472 + L1PA5 LINE L1 5105 6154 0 2356 83 3 3 chr21 10050635 10050936 -34856634 + AluSc SINE Alu 1 301 -8 331 328 141 7 chr21 10051272 10051571 -34855999 + L1ME4a LINE L1 4915 5253 -893 554 271 62 26 chr21 10051745 10052018 -34855552 + L1ME4a LINE L1 5588 5870 -251 209 303 0 0 chr21 10052421 10052487 -34855083 + L2 LINE L2 2565 2630 -684 22 0 0 0 chr21 10052508 10052530 -34855040 + AT_rich Low_complexity Low_complexity 1 22 0 266 211 28 0 chr21 10053733 10053804 -34853766 + (TA)n Simple_repeat Simple_repeat 2 74 0 2091 156 71 6 chr21 10053804 10054169 -34853401 - Tigger1 DNA MER2_type -1 2417 2029 6466 226 48 23 chr21 10054175 10054698 -34852872 - L1 LINE L1 -2596 4192 3684 2432 58 7 7 chr21 10054698 10054990 -34852580 - L1PA5 LINE L1 -3 6151 5860 6466 226 48 23 chr21 10054990 10058964 -34848606 - L1 LINE L1 -3104 3684 14 7058 131 46 30 chr21 10058965 10060128 -34847442 - Tigger1 DNA MER2_type -1236 1182 1 333 200 0 26 chr21 10060129 10060244 -34847326 + (TA)n Simple_repeat Simple_repeat 2 113 0 503 201 7 0 chr21 10060293 10060437 -34847133 + (TA)n Simple_repeat Simple_repeat 2 146 0 206 62 31 0 chr21 10060480 10060512 -34847058 + (TG)n Simple_repeat Simple_repeat 2 34 0 1818 138 7 4 chr21 10061474 10061749 -34845821 + AluSg SINE Alu 11 286 -24 26 30 0 0 chr21 10061798 10061831 -34845739 + AT_rich Low_complexity Low_complexity 1 33 0 756 33 0 0 chr21 10063232 10063323 -34844247 + (TGGA)n Simple_repeat Simple_repeat 1 91 0 1833 163 7 3 chr21 10064365 10064666 -34842904 - AluSq SINE Alu -11 302 1 256 262 0 0 chr21 10065586 10065647 -34841923 + (TATG)n Simple_repeat Simple_repeat 2 62 0 2188 116 3 6 chr21 10065815 10066126 -34841444 - AluSg SINE Alu 0 310 1 219 36 0 0 chr21 10067008 10067036 -34840534 + (TGGA)n Simple_repeat Simple_repeat 2 29 0 2636 58 0 0 chr21 10068147 10068458 -34839112 - AluY SINE Alu 0 311 1 235 119 17 51 chr21 10069228 10069287 -34838283 + CT-rich Low_complexity Low_complexity 2 58 0 22 70 0 0 chr21 10069327 10069370 -34838200 + AT_rich Low_complexity Low_complexity 1 43 0 2062 132 7 0 chr21 10069572 10069859 -34837711 - AluSx SINE Alu -23 289 1 197 211 19 0 chr21 10070495 10070547 -34837023 + (TATG)n Simple_repeat Simple_repeat 2 54 0 1135 201 23 5 chr21 10070728 10070942 -34836628 + MLT1C LTR MaLR 250 467 0 788 271 120 49 chr21 10071699 10072065 -34835505 + MER57B LTR ERV1 39 430 -4 422 211 39 39 chr21 10072191 10072295 -34835275 + MER94 DNA DNA 2 105 -29 493 299 86 62 chr21 10072343 10072879 -34834691 + L1MEd LINE L1 681 1229 -4890 588 294 95 19 chr21 10073064 10073633 -34833937 + L1MEd LINE L1 2819 3430 -2699 464 306 66 12 chr21 10073826 10074068 -34833502 + L1M3 LINE L1 4778 5032 -1114 2400 145 94 2 chr21 10074292 10074686 -34832884 - MSTB1 LTR MaLR -2 430 1 638 289 56 35 chr21 10074807 10075302 -34832268 + L1M3 LINE L1 5263 5765 -406 1691 223 153 58 chr21 10075468 10076154 -34831416 + L1MC4 LINE L1 6614 7364 -678 2141 128 3 0 chr21 10076654 10076951 -34830619 - AluSg SINE Alu -12 298 1 24 32 0 0 chr21 10077124 10077155 -34830415 + AT_rich Low_complexity Low_complexity 1 31 0 399 21 0 0 chr21 10078672 10078720 -34828850 + (TG)n Simple_repeat Simple_repeat 1 48 0 6249 22 10 0 chr21 10081876 10082563 -34825007 + L1PA3 LINE L1 5461 6154 -1 1045 128 6 6 chr21 10082969 10083133 -34824437 + L1MA6 LINE L1 6131 6294 -6 649 194 46 23 chr21 10083137 10083312 -34824258 + L1MC/D LINE L1 5264 5442 -917 40 73 0 0 chr21 10083736 10083818 -34823752 + GC_rich Low_complexity Low_complexity 1 82 0 211 304 0 0 chr21 10083907 10083963 -34823607 + G-rich Low_complexity Low_complexity 101 156 0 1510 153 36 72 chr21 10084854 10084994 -34822576 + AluJb SINE Alu 3 146 -166 2249 79 7 7 chr21 10084994 10085286 -34822284 + AluY SINE Alu 1 292 -19 1510 153 36 72 chr21 10085286 10085452 -34822118 + AluJb SINE Alu 146 298 -14 346 308 6 39 chr21 10085914 10086070 -34821500 - L2 LINE L2 -4 3309 3159 367 235 121 8 chr21 10086094 10086226 -34821344 + L1MC/D LINE L1 5641 5787 -2021 2221 98 0 7 chr21 10086256 10086552 -34821018 + AluSg SINE Alu 1 294 -16 2198 75 43 0 chr21 10086568 10086846 -34820724 + AluSx SINE Alu 1 290 -22 1793 98 80 15 chr21 10087268 10087560 -34820010 - AluSx SINE Alu 0 309 1 2162 103 27 3 chr21 10087568 10087869 -34819701 - AluSq SINE Alu -5 308 1 1134 290 101 21 chr21 10087900 10088435 -34819135 - L2 LINE L2 -2 3311 2729 183 80 0 0 chr21 10088584 10088609 -34818961 + (TAA)n Simple_repeat Simple_repeat 3 27 0 1622 162 0 25 chr21 10088615 10088899 -34818671 + AluJo SINE Alu 1 277 -35 267 103 0 0 chr21 10088900 10088939 -34818631 + (TAGA)n Simple_repeat Simple_repeat 2 40 0 * 426 20 0 0 chr21 10088938 10088989 -34818581 + (CATA)n Simple_repeat Simple_repeat 2 52 0 30 27 0 0 chr21 10089114 10089151 -34818419 + AT_rich Low_complexity Low_complexity 1 37 0 21 0 0 0 chr21 10089396 10089417 -34818153 + AT_rich Low_complexity Low_complexity 1 21 0 889 188 11 54 chr21 10089880 10090066 -34817504 + MER7C DNA MER2_type 1 178 -424 802 135 95 0 chr21 10090042 10090168 -34817402 + MER7C DNA MER2_type 465 602 0 * 400 233 238 32 chr21 10090327 10090516 -34817054 + MIR SINE MIR 14 241 -21 21 0 0 0 chr21 10090977 10090998 -34816572 + AT_rich Low_complexity Low_complexity 1 21 0 372 313 143 19 chr21 10092301 10092566 -34815004 + L2 LINE L2 2555 2852 -462 212 286 107 43 chr21 10092749 10092889 -34814681 + L2 LINE L2 3159 3307 -6 2035 138 24 0 chr21 10093201 10093498 -34814072 + AluSq SINE Alu 1 304 -9 2423 78 7 0 chr21 10093498 10093805 -34813765 + AluY SINE Alu 1 309 -2 1012 149 12 48 chr21 10094014 10094182 -34813388 + FRAM SINE Alu 5 166 0 1028 236 81 100 chr21 10094568 10094888 -34812682 + HAL1 LINE L1 590 896 -1611 994 121 140 29 chr21 10094888 10095095 -34812475 - MER30 DNA MER1_type 0 230 1 1028 236 81 100 chr21 10095095 10095355 -34812215 + HAL1 LINE L1 896 1159 -1348 1277 240 113 36 chr21 10095389 10095918 -34811652 + HAL1 LINE L1 1257 1826 -681 2221 96 20 0 chr21 10096211 10096513 -34811057 + AluY SINE Alu 1 308 -3 207 0 0 0 chr21 10096543 10096566 -34811004 + (GAAAA)n Simple_repeat Simple_repeat 3 25 0 5210 174 68 42 chr21 10096782 10097213 -34810357 + L1MA9 LINE L1 4038 4457 -1855 2163 108 0 23 chr21 10097213 10097519 -34810051 + AluSx SINE Alu 1 299 -13 5210 174 68 42 chr21 10097519 10098789 -34808781 + L1MA9 LINE L1 4457 5820 -492 786 213 35 30 chr21 10098789 10098991 -34808579 + MER6B DNA MER2_type 4 206 -4 5210 174 68 42 chr21 10098991 10099458 -34808112 + L1MA9 LINE L1 5820 6274 -38 329 265 78 90 chr21 10099490 10099627 -34807943 + L1MC/D LINE L1 5584 5718 -2090 2660 32 3 3 chr21 10099627 10099938 -34807632 + AluY SINE Alu 1 311 0 329 265 78 90 chr21 10099938 10100045 -34807525 + L1MC/D LINE L1 5718 5825 -1983 253 243 0 27 chr21 10100078 10100152 -34807418 + (CATATA)n Simple_repeat Simple_repeat 4 75 0 342 311 60 27 chr21 10101255 10101438 -34806132 - MIR SINE MIR -2 260 72 2182 102 7 0 chr21 10102536 10102830 -34804740 - AluSx SINE Alu -16 296 1 739 296 152 37 chr21 10102842 10103309 -34804261 + L2 LINE L2 2579 3133 -180 2127 130 0 0 chr21 10103309 10103602 -34803968 - AluSx SINE Alu -19 293 1 739 296 152 37 chr21 10103602 10103794 -34803776 + L2 LINE L2 3133 3302 -11 794 176 0 0 chr21 10103801 10103932 -34803638 + FLAM_A SINE Alu 1 131 -2 1512 193 0 4 chr21 10104080 10104360 -34803210 + AluJb SINE Alu 28 306 -6 2271 72 0 10 chr21 10105300 10105590 -34801980 + AluY SINE Alu 1 287 -24 24 0 0 0 chr21 10105961 10105985 -34801585 + AT_rich Low_complexity Low_complexity 1 24 0 2063 109 0 21 chr21 10107842 10108127 -34799443 + AluSc SINE Alu 5 283 -26 270 0 0 0 chr21 10108131 10108161 -34799409 + (CAAAA)n Simple_repeat Simple_repeat 2 31 0 187 289 19 0 chr21 10109062 10109114 -34798456 - L2 LINE L2 -7 3265 3213 920 272 189 37 chr21 10109607 10110557 -34797013 + HAL1 LINE L1 1337 2450 -57 2103 131 3 0 chr21 10110557 10110855 -34796715 - AluSx SINE Alu -13 299 1 920 272 189 37 chr21 10110855 10110912 -34796658 + HAL1 LINE L1 2450 2497 -10 709 254 46 28 chr21 10111013 10111230 -34796340 - MER58A DNA MER1_type 0 224 4 308 367 51 8 chr21 10111363 10111600 -34795970 + L2 LINE L2 1805 2051 -1263 682 296 113 23 chr21 10111733 10112077 -34795493 + L1MEc LINE L1 56 430 -5966 447 231 89 30 chr21 10112321 10112490 -34795080 + Charlie1 DNA MER1_type 47 225 -2536 491 189 31 16 chr21 10112492 10112619 -34794951 + Charlie1 DNA MER1_type 2627 2755 -6 530 168 32 93 chr21 10114983 10115128 -34792442 + MER33 DNA MER1_type 51 232 -2353 1620 119 8 8 chr21 10115128 10115364 -34792206 - AluSq SINE Alu -22 291 56 530 168 32 93 chr21 10115364 10115452 -34792118 + MER33 DNA MER1_type 232 324 0 2096 148 0 0 chr21 10115799 10116103 -34791467 + AluSx SINE Alu 1 304 -8 2257 95 0 25 chr21 10116180 10116497 -34791073 - AluY SINE Alu -2 309 1 324 145 66 26 chr21 10116812 10116888 -34790682 - MER116 DNA Mariner -1 79 1 21 0 0 0 chr21 10117522 10117543 -34790027 + AT_rich Low_complexity Low_complexity 1 21 0 1756 221 55 48 chr21 10117755 10118167 -34789403 + L1M4 LINE L1 3076 3484 -2662 1629 122 45 4 chr21 10118167 10118412 -34789158 + AluSx SINE Alu 1 255 -57 2161 121 3 19 chr21 10118412 10118726 -34788844 + AluSq SINE Alu 3 311 -2 1756 221 55 48 chr21 10118726 10118936 -34788634 + L1M4 LINE L1 3483 3703 -2443 1560 171 77 14 chr21 10118938 10119225 -34788345 + AluJo SINE Alu 5 309 -3 666 261 125 15 chr21 10119241 10119527 -34788043 + L1ME1 LINE L1 5776 6106 -60 225 0 0 0 chr21 10119527 10119552 -34788018 + (TA)n Simple_repeat Simple_repeat 2 26 0 666 261 125 15 chr21 10119552 10119614 -34787956 + L1ME1 LINE L1 6106 6160 -6 578 200 188 12 chr21 10120650 10120815 -34786755 - MIR SINE MIR 0 262 69 738 228 0 13 chr21 10121017 10121175 -34786395 - FRAM SINE Alu -20 156 1 2121 113 3 19 chr21 10121801 10122110 -34785460 - AluSx SINE Alu -8 304 1 212 334 167 23 chr21 10124255 10124554 -34783016 + L2 LINE L2 1181 1522 -1792 829 309 150 43 chr21 10124648 10125474 -34782096 + L2 LINE L2 2051 2995 -318 1881 142 30 3 chr21 10125474 10125769 -34781801 - AluSg SINE Alu -7 303 1 829 309 150 43 chr21 10125769 10125834 -34781736 + L2 LINE L2 2995 3052 -261 1883 151 10 10 chr21 10127775 10128087 -34779483 + AluSx SINE Alu 1 312 0 252 267 47 23 chr21 10128525 10128611 -34778959 - MER5B DNA MER1_type -89 89 2 714 153 0 29 chr21 10128662 10128799 -34778771 + FLAM_C SINE Alu 1 133 0 653 205 114 3 chr21 10129563 10129823 -34777747 + MER33 DNA MER1_type 1 363 0 26 50 0 0 chr21 10131751 10131791 -34775779 + AT_rich Low_complexity Low_complexity 1 40 0 1280 181 5 0 chr21 10133586 10133796 -34773774 - AluJb SINE Alu -14 298 88 339 293 50 29 chr21 10134156 10134296 -34773274 + L1MC4a LINE L1 5062 5204 -942 1068 157 39 57 chr21 10134303 10134533 -34773037 + AluJo SINE Alu 86 311 -1 1892 283 87 15 chr21 10134545 10135465 -34772105 + L1MC4a LINE L1 5214 5403 -743 1575 262 144 49 chr21 10135503 10135690 -34771880 + L1MC4 LINE L1 6460 6628 -1414 1382 119 60 14 chr21 10135690 10135789 -34771781 + MER30 DNA MER1_type 2 95 -135 288 0 0 0 chr21 10135789 10135821 -34771749 + (CA)n Simple_repeat Simple_repeat 2 33 0 1382 119 60 14 chr21 10135821 10135939 -34771631 + MER30 DNA MER1_type 95 229 -1 1575 262 144 49 chr21 10135939 10136447 -34771123 + L1MC4 LINE L1 6628 7278 -764 2002 129 3 3 chr21 10136447 10136774 -34770796 - AluSx SINE Alu 0 327 1 1575 262 144 49 chr21 10136774 10137058 -34770512 + L1MC4 LINE L1 7278 7534 -508 406 320 62 24 chr21 10137160 10137371 -34770199 + L1MC4 LINE L1 7689 7919 -123 297 51 0 0 chr21 10137371 10137410 -34770160 + (CA)n Simple_repeat Simple_repeat 2 40 0 406 320 62 24 chr21 10137410 10137539 -34770031 + L1MC4 LINE L1 7919 8042 0 187 265 128 51 chr21 10137676 10137793 -34769777 + L2 LINE L2 3145 3270 -2 532 304 172 0 chr21 10137921 10138125 -34769445 - MIR SINE MIR -22 240 2 25 31 0 0 chr21 10138389 10138421 -34769149 + AT_rich Low_complexity Low_complexity 1 32 0 892 230 88 45 chr21 10140415 10140767 -34766803 + L1ME1 LINE L1 5694 6060 -106 251 176 0 0 chr21 10140771 10140822 -34766748 + L1MA10 LINE L1 6284 6334 0 388 274 211 19 chr21 10141406 10141614 -34765956 + MIR SINE MIR 5 252 -10 1955 148 7 0 chr21 10144091 10144389 -34763181 - AluSx SINE Alu -12 300 1 689 201 69 6 chr21 10144508 10144667 -34762903 - MER58C DNA MER1_type -2 213 45 517 344 139 40 chr21 10144724 10145368 -34762202 + L2 LINE L2 1861 2656 -616 580 89 0 0 chr21 10145368 10145447 -34762123 + MADE1 DNA Mariner 2 80 0 517 344 139 40 chr21 10145447 10145835 -34761735 + L2 LINE L2 2656 3004 -268 2096 119 3 0 chr21 10145835 10146129 -34761441 + AluSx SINE Alu 1 295 -17 186 318 63 16 chr21 10146253 10146316 -34761254 + L2 LINE L2 3155 3220 -52 605 232 155 11 chr21 10146710 10146981 -34760589 + Charlie5 DNA MER1_type 15 2624 0 580 303 55 13 chr21 10148278 10148561 -34759009 + L2 LINE L2 2723 3017 -296 236 325 0 18 chr21 10148938 10149052 -34758518 - MIR SINE MIR -3 259 148 2095 123 0 10 chr21 10149258 10149567 -34758003 + AluSg SINE Alu 1 306 -4 21 0 0 0 chr21 10150513 10150534 -34757036 + AT_rich Low_complexity Low_complexity 1 21 0 1484 101 0 0 chr21 10153139 10153327 -34754243 + AluY SINE Alu 7 194 -117 24 0 0 0 chr21 10153368 10153392 -34754178 + AT_rich Low_complexity Low_complexity 1 24 0 29 28 0 0 chr21 10154247 10154283 -34753287 + AT_rich Low_complexity Low_complexity 1 36 0 1930 143 0 23 chr21 10154345 10154653 -34752917 + AluJb SINE Alu 1 301 -11 260 269 34 17 chr21 10155165 10155284 -34752286 + HAL1 LINE L1 1134 1254 -1253 202 195 0 0 chr21 10155366 10155408 -34752162 - MIR SINE MIR -62 146 109 363 344 50 37 chr21 10155519 10155737 -34751833 + HAL1 LINE L1 1405 1625 -882 1338 180 81 8 chr21 10155893 10156154 -34751416 + MSTB LTR MaLR 1 280 -146 1222 94 6 0 chr21 10156175 10156335 -34751235 - AluSq SINE Alu -19 294 134 904 143 34 7 chr21 10156335 10156482 -34751088 + MSTB LTR MaLR 267 417 -9 234 128 0 0 chr21 10156485 10156524 -34751046 + (TA)n Simple_repeat Simple_repeat 2 40 0 415 261 88 85 chr21 10156903 10157255 -34750315 + L1ME3A LINE L1 2665 3017 -3129 1308 237 144 74 chr21 10157778 10158171 -34749399 + MLT1E2 LTR MaLR 1 404 -222 2209 98 3 31 chr21 10158171 10158489 -34749081 + AluSc SINE Alu 1 309 0 1308 237 144 74 chr21 10158489 10158727 -34748843 + MLT1E2 LTR MaLR 404 624 -2 308 293 102 39 chr21 10159049 10159305 -34748265 + L1ME3A LINE L1 5109 5380 -766 2093 139 0 0 chr21 10159393 10159703 -34747867 + AluSx SINE Alu 2 311 -1 308 275 188 7 chr21 10159711 10159849 -34747721 - MIR SINE MIR -57 205 43 2211 123 0 10 chr21 10159966 10160274 -34747296 + AluSx SINE Alu 3 307 -5 443 256 56 25 chr21 10160324 10160484 -34747086 + L1ME3A LINE L1 5670 5834 -336 1279 247 108 38 chr21 10162129 10163392 -34744178 + L1ME1 LINE L1 4768 6165 -1 248 340 0 0 chr21 10163472 10163569 -34744001 + L1ME LINE L1 531 627 -5903 1927 145 14 3 chr21 10163613 10163909 -34743661 + AluSx SINE Alu 3 301 -11 1212 273 54 33 chr21 10163909 10164484 -34743086 + L1ME LINE L1 1316 1902 -4638 4544 259 93 32 chr21 10164484 10165658 -34741912 + L1MDa LINE L1 3 1104 -5436 2159 125 3 0 chr21 10165658 10165955 -34741615 + AluSx SINE Alu 1 298 -14 4544 259 93 32 chr21 10165955 10166152 -34741418 + L1MDa LINE L1 1104 1288 -5252 1906 144 4 0 chr21 10166152 10166429 -34741141 + AluSx SINE Alu 1 278 -34 4544 259 93 32 chr21 10166429 10167094 -34740476 + L1MDa LINE L1 1288 2164 -4376 2530 211 75 59 chr21 10167094 10167682 -34739888 + Charlie1 DNA MER1_type 1443 2021 -740 1783 130 79 0 chr21 10167682 10167959 -34739611 + AluSx SINE Alu 11 309 -3 2530 211 75 59 chr21 10167959 10168089 -34739481 + Charlie1 DNA MER1_type 2021 2148 -613 243 0 0 0 chr21 10168089 10168116 -34739454 + (TA)n Simple_repeat Simple_repeat 1 27 0 2075 127 0 0 chr21 10168116 10168407 -34739163 - AluSg1 SINE Alu -18 291 1 2530 211 75 59 chr21 10168407 10168545 -34739025 + Charlie1 DNA MER1_type 2147 2314 -447 25 65 0 0 chr21 10168678 10168724 -34738846 + AT_rich Low_complexity Low_complexity 1 46 0 6139 205 35 29 chr21 10168826 10170269 -34737301 - Cheshire DNA MER1_type -761 1659 208 11041 146 45 9 chr21 10170269 10170863 -34736707 + Tigger1 DNA MER2_type 439 1010 -1408 618 174 26 9 chr21 10170863 10170978 -34736592 + FLAM_C SINE Alu 1 117 -16 315 0 0 0 chr21 10170983 10171018 -34736552 + (TAAA)n Simple_repeat Simple_repeat 2 36 0 11041 146 45 9 chr21 10171018 10171427 -34736143 + Tigger1 DNA MER2_type 1013 1406 -1012 2031 128 3 0 chr21 10171427 10171724 -34735846 + AluSx SINE Alu 1 298 -14 11041 146 45 9 chr21 10171724 10172624 -34734946 + Tigger1 DNA MER2_type 1406 2418 0 185 280 212 10 chr21 10172926 10173119 -34734451 + L2 LINE L2 1664 1895 -1419 21 0 0 0 chr21 10173120 10173141 -34734429 + AT_rich Low_complexity Low_complexity 1 21 0 1848 117 11 8 chr21 10173225 10173491 -34734079 + AluSq SINE Alu 1 267 -46 2032 143 0 3 chr21 10173571 10173871 -34733699 + AluSx SINE Alu 1 299 -13 761 140 37 104 chr21 10173881 10174045 -34733525 + FRAM SINE Alu 1 152 -24 1504 204 0 36 chr21 10174126 10174263 -34733307 + AluJo SINE Alu 1 141 -171 1939 128 7 29 chr21 10174263 10174569 -34733001 + AluSx SINE Alu 1 299 -13 2156 128 0 0 chr21 10174572 10174878 -34732692 + AluSq SINE Alu 1 306 -7 1504 204 0 36 chr21 10174878 10175040 -34732530 + AluJo SINE Alu 143 293 -19 337 186 51 0 chr21 10175452 10175511 -34732059 - L2 LINE L2 0 3313 3252 1027 155 17 100 chr21 10175554 10175793 -34731777 + MER20 DNA MER1_type 1 219 0 533 313 58 28 chr21 10176941 10177267 -34730303 + L1ME LINE L1 5483 5818 -303 223 211 19 0 chr21 10177404 10177456 -34730114 + (TATG)n Simple_repeat Simple_repeat 3 55 0 688 225 127 24 chr21 10177930 10178143 -34729427 + MIR SINE MIR 17 251 -11 216 167 0 0 chr21 10178325 10178373 -34729197 + (TG)n Simple_repeat Simple_repeat 2 49 0 406 268 116 30 chr21 10178500 10178804 -34728766 + L2 LINE L2 2722 3057 -215 537 80 0 0 chr21 10178844 10178919 -34728651 + (CCA)n Simple_repeat Simple_repeat 3 77 0 1790 200 45 56 chr21 10179016 10179587 -34727983 + L1MC5 LINE L1 6955 7519 -442 326 234 71 43 chr21 10179640 10179781 -34727789 + L1MC5 LINE L1 7616 7760 -201 2156 113 7 7 chr21 10179782 10180091 -34727479 + AluSx SINE Alu 1 309 -3 442 186 218 77 chr21 10180091 10180247 -34727323 + MIR SINE MIR 19 196 -66 240 172 31 78 chr21 10180301 10180365 -34727205 - MIR SINE MIR -56 152 92 717 189 141 44 chr21 10180405 10180611 -34726959 + MLT1J2 LTR MaLR 2 227 -223 321 271 172 33 chr21 10180740 10180862 -34726708 - MIR SINE MIR -106 156 18 36 0 0 0 chr21 10181157 10181193 -34726377 + AT_rich Low_complexity Low_complexity 1 36 0 2549 58 0 3 chr21 10181435 10181746 -34725824 - AluY SINE Alu -1 310 1 25 31 0 0 chr21 10182074 10182106 -34725464 + AT_rich Low_complexity Low_complexity 1 32 0 2410 88 0 0 chr21 10182204 10182511 -34725059 + AluSx SINE Alu 1 307 -5 1996 139 7 0 chr21 10182682 10182976 -34724594 - AluSp SINE Alu -17 296 1 1130 67 0 0 chr21 10182976 10183110 -34724460 - AluY SINE Alu -177 134 1 25 31 0 0 chr21 10183121 10183153 -34724417 + AT_rich Low_complexity Low_complexity 1 32 0 864 89 89 0 chr21 10183172 10183295 -34724275 + AluSc SINE Alu 160 293 -16 342 207 0 0 chr21 10183301 10183359 -34724211 + MLT1J2 LTR MaLR 331 388 -2 24 53 0 0 chr21 10183380 10183418 -34724152 + AT_rich Low_complexity Low_complexity 1 38 0 1511 164 63 0 chr21 10183424 10183662 -34723908 - AluJo SINE Alu -59 253 1 1587 170 22 50 chr21 10183776 10184134 -34723436 + L1PA16 LINE L1 5803 6150 -16 22 56 0 0 chr21 10184253 10184289 -34723281 + AT_rich Low_complexity Low_complexity 1 36 0 550 302 53 26 chr21 10184463 10184652 -34722918 - MIR SINE MIR -49 213 20 233 352 67 9 chr21 10184673 10184778 -34722792 - L2 LINE L2 -9 3263 3153 2237 90 7 0 chr21 10184781 10185071 -34722499 + AluSg1 SINE Alu 2 293 -16 2030 121 6 19 chr21 10185134 10185447 -34722123 - AluSx SINE Alu -3 309 1 1616 118 134 4 chr21 10185447 10185701 -34721869 - AluSg SINE Alu -20 290 4 330 181 9 190 chr21 10185882 10185998 -34721572 - Tigger7 DNA MER2_type -1 2486 2392 188 244 0 0 chr21 10186431 10186472 -34721098 - MIR SINE MIR -38 224 184 1134 184 0 10 chr21 10186795 10187050 -34720520 + AluJb SINE Alu 92 344 0 1954 87 77 25 chr21 10187611 10187897 -34719673 + AluSp SINE Alu 1 301 -12 1487 268 95 28 chr21 10187961 10188811 -34718759 + L2 LINE L2 2419 3313 0 475 257 140 6 chr21 10188825 10188996 -34718574 + MLT1L LTR MaLR 414 607 -8 1625 171 20 37 chr21 10189181 10189480 -34718090 - AluJb SINE Alu -18 294 1 2079 98 25 14 chr21 10189481 10189790 -34717780 - AluSx SINE Alu 0 312 1 2084 143 7 0 chr21 10189824 10190131 -34717439 + AluSx SINE Alu 1 309 -3 2033 127 4 0 chr21 10190244 10190520 -34717050 + AluSp SINE Alu 1 277 -36 525 265 51 58 chr21 10191104 10191475 -34716095 - HSREP522 Satellite telomeric -76 368 1 214 311 0 33 chr21 10192683 10192773 -34714797 + G-rich Low_complexity Low_complexity 4 90 0 316 197 0 14 chr21 10193632 10193703 -34713867 - L1 LINE L1 -3308 2838 2769 198 71 0 0 chr21 10193711 10193739 -34713831 + (GTTTG)n Simple_repeat Simple_repeat 2 29 0 1801 138 32 3 chr21 10193739 10194015 -34713555 - AluSx SINE Alu -27 285 2 1727 216 80 9 chr21 10194015 10194479 -34713091 - L1 LINE L1 -2203 3943 3447 1629 234 16 0 chr21 10194481 10194852 -34712718 - MSTB LTR MaLR -49 377 1 248 194 0 30 chr21 10194852 10194919 -34712651 - MSTB-int LTR MaLR 0 1651 1587 3048 190 28 5 chr21 10194924 10195528 -34712042 - MSTB-int LTR MaLR -14 1637 1020 4313 256 31 20 chr21 10195536 10197098 -34710472 - L1PA15-16 LINE L1 -2702 4147 2553 2205 129 0 0 chr21 10197098 10197393 -34710177 + AluSx SINE Alu 1 295 -17 4313 256 31 20 chr21 10197393 10198000 -34709570 - L1PA15-16 LINE L1 -4296 2553 1954 511 327 103 30 chr21 10198084 10198487 -34709083 + L1MC/D LINE L1 5354 5795 -396 39 74 0 0 chr21 10198506 10198587 -34708983 + AT_rich Low_complexity Low_complexity 1 81 0 1459 186 29 22 chr21 10198743 10199018 -34708552 - AluJo SINE Alu -23 289 13 21 0 0 0 chr21 10199161 10199182 -34708388 + AT_rich Low_complexity Low_complexity 1 21 0 2123 131 13 0 chr21 10199184 10199308 -34708262 + AluSq SINE Alu 3 124 -189 351 0 0 0 chr21 10199308 10199347 -34708223 + (CA)n Simple_repeat Simple_repeat 2 40 0 2123 131 13 0 chr21 10199347 10199528 -34708042 + AluSq SINE Alu 124 312 -1 1350 74 0 0 chr21 10200129 10200292 -34707278 - AluSg SINE Alu -147 163 1 2341 61 31 10 chr21 10200310 10200657 -34706913 - AluY SINE Alu 0 311 1 1547 141 0 50 chr21 10200657 10200899 -34706671 + AluJb SINE Alu 67 296 -16 658 111 0 9 chr21 10200908 10201016 -34706554 + L1M4 LINE L1 5346 5452 -732 1673 156 17 44 chr21 10201017 10201151 -34706419 + AluJb SINE Alu 5 141 -171 2072 134 0 0 chr21 10201151 10201428 -34706142 + AluSg SINE Alu 1 277 -33 440 35 17 0 chr21 10201433 10201491 -34706079 + (TAAAA)n Simple_repeat Simple_repeat 2 60 0 1673 156 17 44 chr21 10201491 10201645 -34705925 + AluJb SINE Alu 145 291 -21 1936 114 41 28 chr21 10201654 10201944 -34705626 + AluSg SINE Alu 1 294 -16 1045 91 8 0 chr21 10202404 10202536 -34705034 + AluSq/x SINE Alu 4 136 -177 1663 106 0 0 chr21 10202536 10202753 -34704817 + AluY SINE Alu 1 217 -94 468 0 0 0 chr21 10203657 10203709 -34703861 + (GTTTG)n Simple_repeat Simple_repeat 1 52 0 2118 127 0 0 chr21 10203709 10203985 -34703585 - AluSx SINE Alu -31 281 6 1843 78 141 0 chr21 10204703 10204959 -34702611 - AluSq SINE Alu -11 292 1 209 356 67 0 chr21 10204966 10205070 -34702500 - MIR SINE MIR -116 146 36 1974 149 0 19 chr21 10205127 10205443 -34702127 + AluSx SINE Alu 1 310 -2 2264 115 0 3 chr21 10205896 10206201 -34701369 + AluSq SINE Alu 1 304 -9 1891 170 0 13 chr21 10206525 10206837 -34700733 + AluJb SINE Alu 3 310 -2 2022 112 72 0 chr21 10206937 10207213 -34700357 + AluSx SINE Alu 1 296 -16 2007 127 3 10 chr21 10208329 10208621 -34698949 - AluSg SINE Alu -20 290 1 331 174 26 39 chr21 10208857 10209012 -34698558 + (CAGAGA)n Simple_repeat Simple_repeat 2 154 0 532 126 22 55 chr21 10209023 10209206 -34698364 + (CAGAGA)n Simple_repeat Simple_repeat 2 178 0 504 158 30 36 chr21 10209221 10209566 -34698004 + (CAGAGA)n Simple_repeat Simple_repeat 1 342 0 2488 68 0 3 chr21 10209624 10209932 -34697638 + AluY SINE Alu 1 307 -4 654 105 26 20 chr21 10210589 10210741 -34696829 + (TAGA)n Simple_repeat Simple_repeat 1 153 0 668 105 22 33 chr21 10210764 10210945 -34696625 + (TAGA)n Simple_repeat Simple_repeat 1 179 0 413 87 48 19 chr21 10210978 10211082 -34696488 + (TAGA)n Simple_repeat Simple_repeat 2 108 0 724 296 65 28 chr21 10211125 10211477 -34696093 - MLT1J LTR MaLR -45 466 102 1905 179 0 3 chr21 10212250 10212609 -34694961 + AluJb SINE Alu 1 358 0 665 330 158 32 chr21 10212830 10213388 -34694182 + L2 LINE L2 2080 2707 -607 227 139 0 0 chr21 10213445 10213481 -34694089 + MLT1A2 LTR MaLR 24 59 -331 1410 185 108 15 chr21 10213485 10213644 -34693926 + MLT1A2 LTR MaLR 21 164 -210 231 36 0 0 chr21 10213644 10213672 -34693898 + (TC)n Simple_repeat Simple_repeat 2 29 0 1410 185 108 15 chr21 10213672 10213836 -34693734 + MLT1A2 LTR MaLR 164 374 0 1814 215 18 56 chr21 10214179 10214677 -34692893 - MLT1D LTR MaLR -6 499 21 282 149 43 0 chr21 10214707 10214754 -34692816 - MLT1D LTR MaLR -455 50 2 256 188 42 0 chr21 10214804 10214852 -34692718 - MLT1J LTR MaLR -455 50 1 319 85 43 0 chr21 10214853 10214900 -34692670 - MLT1D LTR MaLR -455 50 2 294 125 42 0 chr21 10214902 10214950 -34692620 - MLT1D LTR MaLR -455 50 1 310 104 42 0 chr21 10214951 10214999 -34692571 - MLT1D LTR MaLR -455 50 1 334 64 43 0 chr21 10215000 10215047 -34692523 - MLT1D LTR MaLR -455 50 2 310 104 42 0 chr21 10215049 10215097 -34692473 - MLT1D LTR MaLR -455 50 1 331 83 42 0 chr21 10215098 10215146 -34692424 - MLT1D LTR MaLR -455 50 1 310 104 42 0 chr21 10215147 10215195 -34692375 - MLT1D LTR MaLR -455 50 1 338 83 42 0 chr21 10215196 10215244 -34692326 - MLT1D LTR MaLR -455 50 1 291 111 44 0 chr21 10215245 10215290 -34692280 - MLT1D LTR MaLR -456 49 3 318 104 42 0 chr21 10215293 10215341 -34692229 - MLT1D LTR MaLR -455 50 1 307 125 42 0 chr21 10215342 10215390 -34692180 - MLT1D LTR MaLR -455 50 1 348 64 43 0 chr21 10215439 10215486 -34692084 - MLT1D LTR MaLR -456 49 1 292 128 43 0 chr21 10215487 10215534 -34692036 - MLT1D LTR MaLR -456 49 1 316 125 42 0 chr21 10215535 10215583 -34691987 - MLT1D LTR MaLR -455 50 1 335 83 42 0 chr21 10215636 10215684 -34691886 - MLT1D LTR MaLR -455 50 1 329 104 42 0 chr21 10215685 10215733 -34691837 - MLT1D LTR MaLR -455 50 1 239 137 39 59 chr21 10215734 10215785 -34691785 - MLT1D LTR MaLR -455 50 1 325 85 43 0 chr21 10215786 10215833 -34691737 - MLT1D LTR MaLR -455 50 2 561 55 0 0 chr21 10216229 10216302 -34691268 + L1PA3 LINE L1 6080 6152 -3 2059 130 7 0 chr21 10216462 10216763 -34690807 - AluSx SINE Alu -9 303 1 414 180 18 9 chr21 10217131 10217242 -34690328 + CT-rich Low_complexity Low_complexity 2 113 0 * 970 143 0 16 chr21 10217223 10217405 -34690165 + (TTCTCC)n Simple_repeat Simple_repeat 1 179 0 3506 69 0 0 chr21 10217417 10217865 -34689705 - L1PA8 LINE L1 -15 6157 5710 1255 74 0 0 chr21 10218069 10218217 -34689353 + AluSg SINE Alu 1 148 -162 352 73 55 0 chr21 10218217 10218272 -34689298 - L1PA7 LINE L1 -329 5825 5768 945 138 6 12 chr21 10218272 10218432 -34689138 + L1PA13 LINE L1 5993 6151 -12 191 32 65 0 chr21 10218432 10218463 -34689107 + T-rich Low_complexity Low_complexity 5 37 0 956 107 71 0 chr21 10218476 10218616 -34688954 + AluSg/x SINE Alu 159 308 -4 226 111 0 0 chr21 10218839 10218875 -34688695 - L1PA14 LINE L1 -204 5957 5922 2049 141 0 0 chr21 10218890 10219181 -34688389 - AluSx SINE Alu -21 291 1 2049 144 0 16 chr21 10219206 10219518 -34688052 - AluSx SINE Alu -5 307 1 838 160 53 0 chr21 10219519 10219669 -34687901 - L1PA14 LINE L1 -227 5934 5777 936 138 6 12 chr21 10219678 10219838 -34687732 + L1PA13 LINE L1 5993 6151 -12 253 43 43 21 chr21 10219841 10219888 -34687682 + (TTTG)n Simple_repeat Simple_repeat 1 48 0 502 163 0 43 chr21 10219888 10219966 -34687604 - AluSp/q SINE Alu -30 283 206 2373 91 0 0 chr21 10221802 10222098 -34685472 - AluY SINE Alu -14 297 2 1832 118 0 48 chr21 10222174 10222486 -34685084 - AluSc SINE Alu 0 305 8 622 147 147 0 chr21 10222572 10222694 -34684876 - AluSp/q SINE Alu 0 306 170 455 260 24 0 chr21 10222695 10222785 -34684785 - L1PA16 LINE L1 -46 6120 6025 195 42 0 0 chr21 10222785 10222809 -34684761 + (CCCTG)n Simple_repeat Simple_repeat 4 27 0 455 260 24 0 chr21 10222809 10222845 -34684725 - L1PA16 LINE L1 -141 6025 5991 1503 188 52 42 chr21 10222864 10223172 -34684398 - AluSx SINE Alu -1 311 1 1077 163 25 49 chr21 10223222 10223467 -34684103 - L1PA16 LINE L1 -136 6030 5792 215 137 0 20 chr21 10223859 10223910 -34683660 + (TG)n Simple_repeat Simple_repeat 2 51 0 2130 83 0 11 chr21 10223913 10224190 -34683380 - AluY SINE Alu -37 274 1 1856 86 0 0 chr21 10224200 10224434 -34683136 - AluSx SINE Alu -25 287 54 2165 116 10 0 chr21 10224552 10224883 -34682687 + AluSx SINE Alu 1 334 0 263 253 11 21 chr21 10224888 10224983 -34682587 + L1MB8 LINE L1 5816 5909 -269 2274 98 0 0 chr21 10224983 10225278 -34682292 + AluSx SINE Alu 1 295 -17 2098 113 0 23 chr21 10225280 10225580 -34681990 + AluSg SINE Alu 1 293 -17 2245 109 0 19 chr21 10225582 10225895 -34681675 + AluY SINE Alu 1 307 -4 835 122 35 6 chr21 10226251 10226767 -34680803 + GA-rich Low_complexity Low_complexity 1 531 0 1247 182 0 9 chr21 10227114 10227328 -34680242 - AluJo SINE Alu -11 301 90 842 196 163 48 chr21 10227367 10227501 -34680069 - AluJo SINE Alu -30 282 114 2239 92 14 3 chr21 10227501 10227796 -34679774 + AluY SINE Alu 1 298 -13 842 196 163 48 chr21 10227796 10227870 -34679700 - AluJo SINE Alu -198 114 50 1970 142 4 0 chr21 10228071 10228352 -34679218 + AluSx SINE Alu 1 282 -30 186 43 0 0 chr21 10228354 10228377 -34679193 + (CATA)n Simple_repeat Simple_repeat 2 24 0 2356 99 0 6 chr21 10228835 10229147 -34678423 - AluSx SINE Alu -2 310 1 456 178 25 12 chr21 10229576 10229739 -34677831 + (TAGA)n Simple_repeat Simple_repeat 3 167 0 201 132 0 53 chr21 10229827 10229865 -34677705 + (TCTA)n Simple_repeat Simple_repeat 4 39 0 551 106 70 0 chr21 10229866 10230169 -34677401 + (TAGA)n Simple_repeat Simple_repeat 1 324 0 611 298 6 6 chr21 10230279 10230460 -34677110 - MLT1A1 LTR MaLR 0 365 185 274 254 15 0 chr21 10230490 10230557 -34677013 - MLT1A2 LTR MaLR -98 276 209 340 209 15 0 chr21 10230600 10230667 -34676903 - MLT1A2 LTR MaLR -98 276 209 289 288 12 0 chr21 10230710 10230790 -34676780 - MLT1A2 LTR MaLR -98 276 196 2240 104 0 0 chr21 10230866 10231256 -34676314 - AluSg SINE Alu 0 390 1 234 288 0 0 chr21 10231258 10231324 -34676246 - MLT1A2 LTR MaLR -210 155 90 1701 200 0 3 chr21 10231348 10231653 -34675917 - AluJb SINE Alu -2 310 7 2088 119 3 26 chr21 10231661 10232001 -34675569 - AluSx SINE Alu 0 312 7 2215 114 3 0 chr21 10232009 10232344 -34675226 - AluSx SINE Alu 0 312 1 2398 70 3 10 chr21 10232585 10232883 -34674687 - AluY SINE Alu -10 301 6 2280 74 3 52 chr21 10232887 10233213 -34674357 - AluY SINE Alu -1 310 1 2124 104 7 45 chr21 10233924 10234233 -34673337 + AluSx SINE Alu 1 297 -15 219 192 69 46 chr21 10234300 10234430 -34673140 + (TAGA)n Simple_repeat Simple_repeat 1 133 0 337 183 34 23 chr21 10234474 10234649 -34672921 + (TAGA)n Simple_repeat Simple_repeat 2 178 0 456 169 41 9 chr21 10234703 10235028 -34672542 + (TAGA)n Simple_repeat Simple_repeat 1 335 0 508 144 50 12 chr21 10235057 10235460 -34672110 + (TAGA)n Simple_repeat Simple_repeat 1 418 0 441 159 40 25 chr21 10235471 10235751 -34671819 + (TAGA)n Simple_repeat Simple_repeat 1 284 0 571 145 40 18 chr21 10235791 10236464 -34671106 + (TAGA)n Simple_repeat Simple_repeat 1 687 0 273 29 0 0 chr21 10237753 10237787 -34669783 + (TG)n Simple_repeat Simple_repeat 1 34 0 797 248 103 14 chr21 10239596 10239878 -34667692 + L2 LINE L2 2844 3150 -163 1679 197 0 3 chr21 10240340 10240639 -34666931 - AluJb SINE Alu -14 298 1 7433 170 84 20 chr21 10241274 10242154 -34665416 + L1MA2 LINE L1 3418 4241 -2063 2355 84 0 7 chr21 10242154 10242453 -34665117 - AluY SINE Alu -13 298 2 7433 170 84 20 chr21 10242453 10244081 -34663489 + L1MA2 LINE L1 4241 6099 -205 1198 149 15 0 chr21 10244192 10244393 -34663177 + L1MA2 LINE L1 6101 6304 0 895 222 33 62 chr21 10245243 10245518 -34662052 - MER4B-int LTR ERV1 -5910 848 582 3716 205 25 35 chr21 10245518 10246406 -34661164 + L1MA8 LINE L1 5412 6290 -1 25 51 0 0 chr21 10246470 10246509 -34661061 + AT_rich Low_complexity Low_complexity 1 39 0 2535 41 0 31 chr21 10247491 10247808 -34659762 + AluY SINE Alu 1 307 -4 25 31 0 0 chr21 10248245 10248277 -34659293 + AT_rich Low_complexity Low_complexity 1 32 0 334 255 0 128 chr21 10248586 10248782 -34658788 - MLT1D LTR MaLR -331 174 4 225 0 0 0 chr21 10249578 10249603 -34657967 + (A)n Simple_repeat Simple_repeat 1 25 0 39577 76 7 10 chr21 10249606 10255769 -34651801 + L1PA4 LINE L1 2 6147 -8 3247 215 49 15 chr21 10255790 10255860 -34651710 - L1PA15-16 LINE L1 -3546 3303 3237 826 75 9 0 chr21 10255860 10255967 -34651603 - L1PA4 LINE L1 -2 6153 6046 3247 215 49 15 chr21 10255967 10256927 -34650643 - L1PA15-16 LINE L1 -3612 3237 2249 1930 144 3 0 chr21 10256927 10257218 -34650352 - AluSx SINE Alu -20 292 1 3247 215 49 15 chr21 10257218 10257232 -34650338 - L1PA15-16 LINE L1 -4600 2249 2237 326 275 210 20 chr21 10258487 10258782 -34648788 - L2 LINE L2 -340 2974 2624 211 234 45 147 chr21 10259016 10259256 -34648314 + L2 LINE L2 2816 3014 -258 1552 183 43 0 chr21 10259256 10259513 -34648057 + AluJb SINE Alu 1 268 -44 211 234 45 147 chr21 10259513 10259605 -34647965 + L2 LINE L2 3014 3114 -158 297 196 71 0 chr21 10260462 10260518 -34647052 + FRAM SINE Alu 75 134 -32 505 235 56 72 chr21 10260760 10261096 -34646474 - L2 LINE L2 -219 3053 2725 309 214 0 0 chr21 10261129 10261185 -34646385 - AluJ/monomer SINE Alu -3 299 244 460 214 76 0 chr21 10261186 10261331 -34646239 - L1M4 LINE L1 -3213 2933 2778 574 265 49 65 chr21 10263155 10263297 -34644273 - L1P1 LINE L1 -528 5627 5484 1971 101 44 20 chr21 10263297 10263593 -34643977 - AluSx SINE Alu -7 305 3 574 265 49 65 chr21 10263593 10263968 -34643602 - L1P1 LINE L1 -671 5484 5112 804 265 50 22 chr21 10264202 10264564 -34643006 - L1 LINE L1 -1157 4989 4618 1785 245 46 39 chr21 10264585 10265628 -34641942 - L1MA6 LINE L1 -31 6269 5123 255 143 0 0 chr21 10265720 10265762 -34641808 - LTR23 LTR ERV1 -73 364 323 40 59 0 0 chr21 10265859 10265927 -34641643 + AT_rich Low_complexity Low_complexity 1 68 0 727 239 72 76 chr21 10266025 10266444 -34641126 - L1MA6 LINE L1 -1107 5039 4623 2904 252 23 28 chr21 10266452 10267354 -34640216 - L1MA6 LINE L1 -9 6291 5394 1406 238 36 28 chr21 10267355 10268095 -34639475 - L1P4 LINE L1 -565 5601 4855 2418 77 0 0 chr21 10268423 10268720 -34638850 + AluY SINE Alu 1 297 -14 351 335 45 10 chr21 10268763 10268963 -34638607 + ERVL LTR ERVL 978 1184 -4580 292 260 90 45 chr21 10269543 10269720 -34637850 - LTR33 LTR ERVL -176 345 161 6085 159 56 35 chr21 10269952 10270132 -34637438 - Tigger3b DNA MER2_type -1817 1211 1036 2062 137 26 65 chr21 10270132 10270355 -34637215 + MER1B DNA MER1_type 1 206 -2504 2147 97 35 0 chr21 10270355 10270645 -34636925 + AluSc SINE Alu 1 300 -9 2062 137 26 65 chr21 10270645 10270772 -34636798 + MER1B DNA MER1_type 206 337 0 6085 159 56 35 chr21 10270772 10270832 -34636738 - Tigger3b DNA MER2_type -1992 1036 979 1952 114 7 0 chr21 10270832 10271104 -34636466 + AluSp SINE Alu 33 306 -7 6085 159 56 35 chr21 10271104 10271775 -34635795 - Tigger3b DNA MER2_type -2049 979 266 2172 178 66 15 chr21 10271775 10272186 -34635384 - Tigger2a DNA MER2_type -2 432 1 6085 159 56 35 chr21 10272186 10272456 -34635114 - Tigger3b DNA MER2_type -2762 266 3 2107 106 0 30 chr21 10272599 10272900 -34634670 - AluY SINE Alu -19 292 1 1530 314 65 13 chr21 10273144 10273739 -34633831 + ERVL LTR ERVL 4292 4917 -847 1930 156 3 0 chr21 10275480 10275775 -34631795 - AluSx SINE Alu -14 298 3 682 261 140 21 chr21 10275778 10276389 -34631181 + L1ME LINE L1 5060 5748 -414 1720 212 121 22 chr21 10276389 10276894 -34630676 + L1MCa LINE L1 20 574 -5852 287 211 0 0 chr21 10276897 10276949 -34630621 + L1MCa LINE L1 1515 1566 -4860 1013 155 95 0 chr21 10276950 10277150 -34630420 + L1MCa LINE L1 1692 1910 -4516 1090 171 88 0 chr21 10277243 10277459 -34630111 + Charlie1 DNA MER1_type 578 812 -1949 1983 144 3 0 chr21 10277459 10277765 -34629805 + AluSg SINE Alu 1 307 -3 5530 125 38 21 chr21 10277769 10278964 -34628606 + L1PA16 LINE L1 4951 6166 0 4631 53 0 0 chr21 10279041 10279608 -34627962 + HSATI Satellite Satellite 1 567 -10 1623 151 0 51 chr21 10279608 10279900 -34627670 + AluY SINE Alu 13 289 -22 266 99 59 46 chr21 10279901 10280053 -34627517 + (TA)n Simple_repeat Simple_repeat 1 154 0 447 53 80 42 chr21 10280073 10280340 -34627230 + (TA)n Simple_repeat Simple_repeat 1 277 0 430 144 29 23 chr21 10280341 10280515 -34627055 + (TTATA)n Simple_repeat Simple_repeat 5 179 0 * 485 82 61 30 chr21 10280494 10280791 -34626779 + (TA)n Simple_repeat Simple_repeat 1 306 0 208 99 70 0 chr21 10280818 10280889 -34626681 + (TA)n Simple_repeat Simple_repeat 2 77 0 1906 53 0 0 chr21 10280889 10281116 -34626454 + HSATI Satellite Satellite 1 227 -350 1240 137 0 1 chr21 11281122 11282304 -33625266 - ALR/Alpha Satellite centromeric 0 1181 1 1322 138 4 0 chr21 11282318 11297432 -33610138 - ALR/Alpha Satellite centromeric 0 15174 1 1294 154 3 2 chr21 11297447 11312440 -33595130 - ALR/Alpha Satellite centromeric 0 17528 32 14243 34 0 0 chr21 11312440 11314925 -33592645 - L1PA2 LINE L1 -1 6154 3670 1294 154 3 2 chr21 11314925 11314958 -33592612 - ALR/Alpha Satellite centromeric -17496 32 1 1217 121 11 0 chr21 11315089 11315271 -33592299 + AluSg/x SINE Alu 127 310 0 215 233 0 0 chr21 11315330 11315373 -33592197 + MIR SINE MIR 199 241 -21 1827 133 7 31 chr21 11315378 11315702 -33591868 - AluSc SINE Alu 0 317 1 1836 130 14 3 chr21 11315854 11316146 -33591424 + AluSq SINE Alu 1 295 -18 2252 79 0 0 chr21 11316148 11316504 -33591066 + AluY SINE Alu 3 358 0 23 0 0 0 chr21 11316824 11316847 -33590723 + AT_rich Low_complexity Low_complexity 1 23 0 29 60 0 0 chr21 11317450 11317500 -33590070 + AT_rich Low_complexity Low_complexity 1 50 0 1935 127 0 65 chr21 11317952 11318275 -33589295 - AluSg SINE Alu -8 302 1 1349 169 115 0 chr21 11318322 11318583 -33588987 - AluSq SINE Alu -12 291 1 2177 122 0 3 chr21 11318605 11318916 -33588654 - AluY SINE Alu 0 311 2 1878 168 7 0 chr21 11318956 11319259 -33588311 - AluSx SINE Alu -7 305 1 588 303 34 14 chr21 11320066 11320274 -33587296 - LTR16B LTR ERVL -78 386 175 273 29 0 0 chr21 11320634 11320673 -33586897 + (TG)n Simple_repeat Simple_repeat 1 73 0 273 29 0 0 chr21 11320673 11320707 -33586863 + (TG)n Simple_repeat Simple_repeat 2 35 0 508 340 58 29 chr21 11320897 11321277 -33586293 - ERVL LTR ERVL -643 4842 4452 251 170 38 19 chr21 11321278 11321331 -33586239 - MLT1F LTR MaLR -83 459 406 930 341 76 31 chr21 11321415 11322306 -33585264 - ERVL LTR ERVL -1049 3947 3159 426 352 46 9 chr21 11322311 11322527 -33585043 - ERVL LTR ERVL -2442 3322 3099 2084 102 0 14 chr21 11322735 11323020 -33584550 + AluY SINE Alu 20 300 -11 1571 256 157 14 chr21 11323023 11323786 -33583784 + L1ME2 LINE L1 5285 6156 -8 236 241 9 93 chr21 11324620 11324728 -33582842 - MIR SINE MIR -44 218 120 2273 97 0 0 chr21 11326011 11326310 -33581260 - AluY SINE Alu -8 303 5 2051 107 45 0 chr21 11326702 11326992 -33580578 + AluSq SINE Alu 1 303 -10 998 81 0 0 chr21 11327148 11327271 -33580299 + AluY SINE Alu 12 134 -177 1516 183 51 3 chr21 11327271 11327566 -33580004 + AluSx SINE Alu 1 309 -3 1970 159 0 0 chr21 11328577 11328879 -33578691 - AluSx SINE Alu 0 312 11 2118 121 3 3 chr21 11329630 11329928 -33577642 + AluSg SINE Alu 1 298 -12 1137 138 6 0 chr21 11330496 11330663 -33576907 + AluSg/x SINE Alu 129 296 -16 512 230 14 0 chr21 11330936 11331075 -33576495 + (CATATA)n Simple_repeat Simple_repeat 4 144 0 2073 130 17 3 chr21 11331314 11331613 -33575957 + AluSg SINE Alu 1 303 -7 28 111 0 0 chr21 11331744 11331870 -33575700 + AT_rich Low_complexity Low_complexity 1 126 0 2168 114 7 0 chr21 11332250 11332549 -33575021 - AluY SINE Alu -10 301 1 2177 121 6 10 chr21 11332614 11332928 -33574642 - AluSp SINE Alu 0 313 1 1820 157 44 0 chr21 11333273 11333566 -33574004 - AluSx SINE Alu -6 306 1 2193 115 0 13 chr21 11333588 11333893 -33573677 - AluY SINE Alu -8 303 3 670 276 89 22 chr21 11334016 11334241 -33573329 + MIR SINE MIR 3 242 -20 5746 154 61 24 chr21 11334271 11335176 -33572394 - Tigger3b DNA MER2_type -1797 1231 361 2044 143 0 3 chr21 11335176 11335483 -33572087 + AluSx SINE Alu 1 306 -6 2598 36 3 0 chr21 11335490 11335791 -33571779 + AluY SINE Alu 1 302 -9 5746 154 61 24 chr21 11335791 11336064 -33571506 - Tigger3b DNA MER2_type -2672 356 1 209 389 36 7 chr21 11336096 11336235 -33571335 + L2 LINE L2 2386 2528 -786 22 0 0 0 chr21 11336679 11336701 -33570869 + AT_rich Low_complexity Low_complexity 1 22 0 245 27 54 0 chr21 11337161 11337198 -33570372 + (CAAA)n Simple_repeat Simple_repeat 2 40 0 2050 136 0 3 chr21 11337624 11337919 -33569651 + AluSc SINE Alu 3 296 -13 876 181 13 7 chr21 11338276 11338431 -33569139 - AluSg/x SINE Alu -21 289 134 2083 152 0 9 chr21 11338434 11338612 -33568958 - AluSx SINE Alu 0 312 137 1660 116 0 0 chr21 11338612 11338827 -33568743 - AluSg SINE Alu -95 215 1 2083 152 0 9 chr21 11338827 11338963 -33568607 - AluSx SINE Alu -175 137 1 3494 206 30 75 chr21 11339032 11340047 -33567523 + LTR5 LTR ERVK 1 969 0 396 239 33 38 chr21 11341483 11341667 -33565903 - LTR37B LTR ERV1 -24 444 262 2039 116 20 13 chr21 11341667 11341969 -33565601 + AluY SINE Alu 1 304 -7 3610 199 39 39 chr21 11341980 11342261 -33565309 + L1MB4 LINE L1 4905 5184 -996 2065 121 36 0 chr21 11342261 11342542 -33565028 + AluSg SINE Alu 1 291 -19 3610 199 39 39 chr21 11342542 11343544 -33564026 + L1MB4 LINE L1 5184 6180 0 440 264 0 7 chr21 11343744 11343884 -33563686 - LTR37B LTR ERV1 -200 268 130 2461 59 7 0 chr21 11344079 11344382 -33563188 - AluY SINE Alu -6 305 1 1493 185 102 10 chr21 11344725 11345039 -33562531 + MER61A LTR ERV1 1 343 0 2265 105 3 0 chr21 11345574 11345878 -33561692 - AluSc SINE Alu 0 309 5 2129 176 91 36 chr21 11346356 11346883 -33560687 - L1MA9 LINE L1 -2 6310 5755 513 252 25 0 chr21 11346891 11347050 -33560520 + L1MC/D LINE L1 5254 5416 -928 563 255 89 19 chr21 11347059 11347449 -33560121 + L1MC3 LINE L1 1713 2238 -4369 304 248 75 99 chr21 11347477 11347638 -33559932 + L1MC3 LINE L1 2167 2323 -4103 1490 182 68 0 chr21 11347638 11347957 -33559613 + AluSx SINE Alu 1 337 0 3160 249 65 18 chr21 11347980 11349344 -33558226 + L1MC3 LINE L1 2936 4363 -2063 2387 197 170 81 chr21 11349379 11349491 -33558079 + L1MC3 LINE L1 5828 5929 -2136 1531 131 6 131 chr21 11349491 11349834 -33557736 - AluSx SINE Alu -12 300 1 2387 197 170 81 chr21 11349834 11350152 -33557418 + L1MC3 LINE L1 5929 6217 -1848 2303 72 7 13 chr21 11350152 11350457 -33557113 - AluY SINE Alu -8 303 1 2387 197 170 81 chr21 11350457 11350681 -33556889 + L1MC3 LINE L1 6217 6419 -1646 2279 100 0 19 chr21 11350681 11350990 -33556580 + AluSq SINE Alu 9 311 -2 2387 197 170 81 chr21 11350990 11351413 -33556157 + L1MC3 LINE L1 6419 7004 -1061 292 133 67 17 chr21 11351685 11351745 -33555825 - AluJb SINE Alu -7 295 233 398 182 0 0 chr21 11351752 11351829 -33555741 + L1MC/D LINE L1 5463 5539 -794 1157 222 16 12 chr21 11351830 11352073 -33555497 - AluJb SINE Alu -68 244 1 441 297 52 124 chr21 11352242 11352969 -33554601 + L1M2 LINE L1 473 1147 -5702 2249 65 33 29 chr21 11354498 11354833 -33552737 + AluY SINE Alu 1 311 0 1983 135 10 0 chr21 11354834 11355130 -33552440 + AluSx SINE Alu 1 299 -13 21 0 0 0 chr21 11356308 11356329 -33551241 + AT_rich Low_complexity Low_complexity 1 21 0 270 252 21 42 chr21 11357142 11357285 -33550285 - MER104 DNA Tc2 -37 143 4 515 287 82 49 chr21 11357378 11357634 -33549936 - MIR SINE MIR -1 261 2 21 57 0 0 chr21 11358029 11358064 -33549506 + AT_rich Low_complexity Low_complexity 1 35 0 299 305 19 0 chr21 11358698 11358803 -33548767 + MER102a DNA MER1_type 223 329 -1 22 70 0 0 chr21 11358858 11358901 -33548669 + AT_rich Low_complexity Low_complexity 1 43 0 2201 126 3 7 chr21 11359311 11359621 -33547949 - AluSc SINE Alu 0 309 1 259 312 91 0 chr21 11360155 11360232 -33547338 - L2 LINE L2 -50 3222 3139 22 56 0 0 chr21 11360642 11360678 -33546892 + AT_rich Low_complexity Low_complexity 1 36 0 1043 185 6 6 chr21 11360975 11361153 -33546417 + AluSx SINE Alu 2 179 -133 487 257 0 0 chr21 11362890 11362995 -33544575 + U6 snRNA snRNA 1 105 -2 31 58 0 0 chr21 11363440 11363492 -33544078 + AT_rich Low_complexity Low_complexity 1 52 0 605 186 0 0 chr21 11363663 11363765 -33543805 - AluJ/FLAM SINE Alu -210 102 1 285 353 80 0 chr21 11363845 11363995 -33543575 - MIR SINE MIR -44 218 57 39 38 0 0 chr21 11364754 11364807 -33542763 + AT_rich Low_complexity Low_complexity 1 53 0 45 105 0 0 chr21 11364928 11365099 -33542471 + AT_rich Low_complexity Low_complexity 1 171 0 364 141 0 0 chr21 11365100 11365166 -33542404 - FLAM SINE Alu -8 125 68 1421 192 44 64 chr21 11365218 11365665 -33541905 - Tigger2 DNA MER2_type 0 2718 1 181 373 85 17 chr21 11366196 11366314 -33541256 - L2 LINE L2 -2 3270 3145 229 200 11 56 chr21 11366433 11366523 -33541047 + (TTA)n Simple_repeat Simple_repeat 2 87 0 1973 132 7 19 chr21 11366668 11366978 -33540592 + AluSx SINE Alu 3 308 -4 2294 179 72 12 chr21 11367269 11367783 -33539787 + LTR10A LTR ERV1 3 547 -62 24127 180 34 46 chr21 11367821 11369713 -33537857 + HERVI LTR ERV1 26 1940 -5845 2277 98 0 3 chr21 11369713 11370008 -33537562 - AluY SINE Alu -17 294 1 24127 180 34 46 chr21 11370008 11373365 -33534205 + HERVI LTR ERV1 1940 5210 -2575 7171 237 14 35 chr21 11373363 11375292 -33532278 + LTR10A-int LTR ERV1 4758 6647 -2 * 2283 168 72 12 chr21 11375366 11375881 -33531689 + LTR10A LTR ERV1 1 547 0 455 303 107 4 chr21 11376520 11376754 -33530816 - MLT1L LTR MaLR -221 394 137 820 270 44 0 chr21 11376950 11377154 -33530416 - MER58A DNA MER1_type 0 224 12 26 50 0 0 chr21 11377366 11377406 -33530164 + AT_rich Low_complexity Low_complexity 1 40 0 23 0 0 0 chr21 11377474 11377497 -33530073 + AT_rich Low_complexity Low_complexity 1 23 0 335 342 97 38 chr21 11377687 11378026 -33529544 - L2 LINE L2 -924 2390 2032 1186 229 86 30 chr21 11378298 11378914 -33528656 - L1MDa LINE L1 -3558 2982 2333 518 256 64 0 chr21 11378954 11379110 -33528460 - L1MDa LINE L1 -4287 2434 2269 237 238 50 56 chr21 11379260 11379420 -33528150 - L1MDa LINE L1 -5265 1456 1298 * 706 326 112 45 chr21 11379406 11380068 -33527502 - L1MDa LINE L1 -5651 1070 365 337 357 88 43 chr21 11380076 11380404 -33527166 + L2 LINE L2 2930 3272 0 2345 75 7 16 chr21 11380560 11380867 -33526703 + AluY SINE Alu 1 304 -7 241 287 99 0 chr21 11381160 11381341 -33526229 - L1ME LINE L1 -283 5838 5640 31 0 0 0 chr21 11381518 11381549 -33526021 + AT_rich Low_complexity Low_complexity 1 31 0 22 0 0 0 chr21 11381686 11381708 -33525862 + AT_rich Low_complexity Low_complexity 1 22 0 25 51 0 0 chr21 11381839 11381878 -33525692 + AT_rich Low_complexity Low_complexity 1 39 0 1622 223 48 9 chr21 11382434 11382651 -33524919 - L1M4 LINE L1 -464 5720 5513 2086 66 0 4 chr21 11382651 11382910 -33524660 - AluY SINE Alu -53 258 1 1622 223 48 9 chr21 11382910 11383364 -33524206 - L1M4 LINE L1 -671 5513 5023 1382 186 8 11 chr21 11383366 11383629 -33523941 + L1PB4 LINE L1 5883 6144 -12 812 177 83 26 chr21 11383681 11383873 -33523697 - L1MB4 LINE L1 -2 6178 5976 305 260 0 0 chr21 11383877 11383954 -33523616 + MER3 DNA MER1_type 133 209 0 381 308 124 22 chr21 11384040 11384455 -33523115 + L2 LINE L2 2661 3124 -189 874 185 25 0 chr21 11384477 11384634 -33522936 - AluJo SINE Alu -32 280 120 304 309 149 30 chr21 11384634 11384802 -33522768 + L2 LINE L2 3125 3312 -1 5842 129 25 11 chr21 11384915 11385414 -33522156 - L1P LINE L1 -2353 3793 3302 2175 121 0 0 chr21 11385414 11385711 -33521859 - AluSg SINE Alu -13 297 1 5842 129 25 11 chr21 11385711 11386184 -33521386 - L1P LINE L1 -2844 3302 2808 2773 91 0 0 chr21 11386202 11386574 -33520996 + L1PA8 LINE L1 5788 6159 -13 1462 279 84 23 chr21 11386599 11387347 -33520223 + L1M4 LINE L1 4496 5289 -857 14959 47 2 1 chr21 11387384 11390022 -33517548 + L1PA5 LINE L1 3507 6145 -9 1984 104 32 26 chr21 11390812 11391121 -33516449 + AluY SINE Alu 1 311 0 1710 148 51 46 chr21 11391634 11392006 -33515564 + THE1C LTR MaLR 2 375 0 359 215 0 0 chr21 11392006 11392071 -33515499 + THE1C-int LTR MaLR 1 65 -1515 6522 156 18 7 chr21 11392071 11393215 -33514355 + THE1C-int LTR MaLR 215 1422 -158 310 173 0 0 chr21 11394290 11394342 -33513228 + MER51D LTR ERV1 500 551 -106 1948 136 3 10 chr21 11394454 11394755 -33512815 + AluSq SINE Alu 1 299 -14 7741 98 4 1 chr21 11395319 11396387 -33511183 - MER11C LTR ERVK 0 1071 1 21 71 0 0 chr21 11396442 11396484 -33511086 + AT_rich Low_complexity Low_complexity 1 42 0 2000 138 0 0 chr21 11396586 11396877 -33510693 + AluSq SINE Alu 1 291 -22 2806 21 0 0 chr21 11397221 11397548 -33510022 - L1PA2 LINE L1 0 6155 5829 3522 30 0 5 chr21 11397548 11397977 -33509593 + L1P LINE L1 4778 5204 -942 21 0 0 0 chr21 11398092 11398113 -33509457 + AT_rich Low_complexity Low_complexity 1 21 0 21 36 0 0 chr21 11398253 11398281 -33509289 + AT_rich Low_complexity Low_complexity 1 28 0 2337 82 0 3 chr21 11398485 11398791 -33508779 - AluY SINE Alu -6 305 1 1200 126 6 0 chr21 11400114 11400288 -33507282 + AluSx SINE Alu 1 175 -137 24 67 0 0 chr21 11400608 11400653 -33506917 + AT_rich Low_complexity Low_complexity 1 45 0 1026 152 162 0 chr21 11401282 11401480 -33506090 + MER30 DNA MER1_type 1 230 0 3650 203 39 17 chr21 11401689 11402507 -33505063 - L1PA16 LINE L1 -14 6152 5317 5229 273 48 16 chr21 11402510 11402966 -33504604 - L1 LINE L1 -864 5282 4842 198 0 0 0 chr21 11402966 11402988 -33504582 + (TG)n Simple_repeat Simple_repeat 2 23 0 5229 273 48 16 chr21 11402988 11404443 -33503127 - L1 LINE L1 -1304 4842 3310 4118 230 80 30 chr21 11404454 11404649 -33502921 + L1MA8 LINE L1 3897 4081 -2219 2085 116 3 0 chr21 11404649 11404943 -33502627 - AluY SINE Alu -16 295 1 4118 230 80 30 chr21 11404943 11406685 -33500885 + L1MA8 LINE L1 4081 5941 -359 565 213 173 4 chr21 11406696 11406921 -33500649 + L1MA8 LINE L1 6025 6287 -4 2054 136 0 0 chr21 11407664 11407951 -33499619 - AluSc SINE Alu -16 293 7 1928 156 0 7 chr21 11408644 11408951 -33498619 + AluSg SINE Alu 5 309 -1 849 162 37 11 chr21 11409585 11409776 -33497794 + L1MA3 LINE L1 6110 6305 0 357 313 143 24 chr21 11414257 11414593 -33492977 + L1MB2 LINE L1 2259 2634 -4862 586 288 114 64 chr21 11414595 11414623 -33492947 + L1MB2 LINE L1 2471 2496 -5069 1251 232 21 7 chr21 11414623 11414907 -33492663 + AluJb SINE Alu 1 288 -24 586 288 114 64 chr21 11414907 11416345 -33491225 + L1MB2 LINE L1 2496 3861 -3704 2126 112 10 0 chr21 11416345 11416650 -33490920 + AluY SINE Alu 1 308 -3 586 288 114 64 chr21 11416650 11416675 -33490895 + L1MB2 LINE L1 3861 3883 -3682 1788 146 33 0 chr21 11416675 11416949 -33490621 + AluSx SINE Alu 12 294 -18 586 288 114 64 chr21 11416949 11417239 -33490331 + L1MB2 LINE L1 3883 4320 -3245 737 264 52 18 chr21 11417242 11417571 -33489999 + L1MB2 LINE L1 5930 6269 -1296 1111 267 54 43 chr21 11417574 11417597 -33489973 + L1MB2 LINE L1 7094 7115 -475 2131 108 0 7 chr21 11417597 11417893 -33489677 - AluY SINE Alu -17 294 1 1111 267 54 43 chr21 11417893 11418037 -33489533 + L1MB2 LINE L1 7115 7256 -334 1835 143 17 10 chr21 11418037 11418330 -33489240 + AluSp SINE Alu 1 295 -18 1111 267 54 43 chr21 11418330 11418626 -33488944 + L1MB2 LINE L1 7256 7563 -27 369 264 26 109 chr21 11419017 11419039 -33488531 + L1MB2 LINE L1 2360 2382 -5185 2232 78 0 3 chr21 11419039 11419366 -33488204 + AluY SINE Alu 1 326 0 369 264 26 109 chr21 11419366 11419535 -33488035 + L1MB2 LINE L1 2382 2536 -5031 270 254 9 45 chr21 11419575 11419685 -33487885 + L1MB2 LINE L1 2887 2992 -4573 511 259 0 9 chr21 11419686 11419802 -33487768 + FLAM_C SINE Alu 1 115 -28 1984 125 0 4 chr21 11420060 11420376 -33487194 + AluSg1 SINE Alu 3 317 0 509 271 66 35 chr21 11420386 11420752 -33486818 + L1MB2 LINE L1 3269 3645 -3922 478 185 0 0 chr21 11420836 11420917 -33486653 + AluJ/FLAM SINE Alu 4 84 -228 784 285 40 53 chr21 11420917 11421290 -33486280 + L1MB2 LINE L1 3657 4034 -3531 1931 218 36 2 chr21 11421290 11421702 -33485868 - MSTB LTR MaLR 0 426 1 784 285 40 53 chr21 11421702 11421832 -33485738 + L1MB2 LINE L1 4034 4164 -3401 1327 206 33 11 chr21 11421832 11422108 -33485462 + AluJb SINE Alu 1 282 -30 784 285 40 53 chr21 11422108 11422259 -33485311 + L1MB2 LINE L1 4164 4303 -3262 1280 276 86 20 chr21 11422389 11423224 -33484346 + L1MB2 LINE L1 6095 6983 -607 22 0 0 0 chr21 11423243 11423265 -33484305 + AT_rich Low_complexity Low_complexity 1 22 0 33 25 0 0 chr21 11423311 11423351 -33484219 + AT_rich Low_complexity Low_complexity 1 40 0 324 124 66 0 chr21 11423492 11423629 -33483941 + (TA)n Simple_repeat Simple_repeat 2 147 0 204 125 62 0 chr21 11423646 11423694 -33483876 + (TA)n Simple_repeat Simple_repeat 2 52 0 1681 202 51 33 chr21 11423694 11424109 -33483461 + L1MB2 LINE L1 7092 7519 -71 1226 243 7 10 chr21 11424109 11424397 -33483173 - AluJo SINE Alu -24 288 2 1681 202 51 33 chr21 11424397 11424452 -33483118 + L1MB2 LINE L1 7519 7572 -18 1868 103 4 8 chr21 11424670 11424932 -33482638 + AluSq SINE Alu 1 261 -52 481 353 20 5 chr21 11424941 11425142 -33482428 + L1MA9 LINE L1 348 551 -5404 451 288 31 18 chr21 11425273 11425436 -33482134 + L1MA9 LINE L1 701 865 -5090 3851 232 52 17 chr21 11425441 11427559 -33480011 + L1MA9 LINE L1 3981 6175 -25 22 35 0 0 chr21 11427634 11427663 -33479907 + AT_rich Low_complexity Low_complexity 1 29 0 209 413 0 0 chr21 11428116 11428191 -33479379 - L2 LINE L2 -498 2816 2742 370 342 161 0 chr21 11429437 11429598 -33477972 - MER5A DNA MER1_type -1 188 2 500 216 92 60 chr21 11429744 11429962 -33477608 + L1MC4 LINE L1 7281 7505 -537 2197 98 0 29 chr21 11430294 11430609 -33476961 - AluSx SINE Alu -6 306 1 233 338 162 7 chr21 11431463 11431611 -33475959 - MER5A DNA MER1_type 0 189 19 257 216 18 108 chr21 11431828 11431939 -33475631 - MIR SINE MIR -9 253 153 1951 127 3 3 chr21 11432023 11432306 -33475264 - AluSp SINE Alu -30 283 1 2370 174 16 5 chr21 11434030 11434462 -33473108 - LTR56 LTR ERV1 0 445 9 1370 180 26 16 chr21 11434952 11435380 -33472190 - MER67C LTR ERV1 -1 709 218 2051 119 10 0 chr21 11436286 11436581 -33470989 + AluSx SINE Alu 1 298 -14 2153 124 3 10 chr21 11436618 11436925 -33470645 - AluSp SINE Alu -8 305 1 22 0 0 0 chr21 11437263 11437285 -33470285 + AT_rich Low_complexity Low_complexity 1 22 0 1215 49 0 19 chr21 11437285 11437447 -33470123 - L1PA4 LINE L1 -1 6154 5996 695 131 5 0 chr21 11437452 11447063 -33460507 - CER Satellite Satellite 0 9650 1 40398 56 3 2 chr21 11447086 11453238 -33454332 + L1PA4 LINE L1 9 6164 0 328 272 108 52 chr21 11453321 11453534 -33454036 + L1MDa LINE L1 1514 1738 -4802 252 300 70 19 chr21 11453582 11453792 -33453778 + L1MDa LINE L1 1657 2080 -4641 21 0 0 0 chr21 11453941 11453962 -33453608 + AT_rich Low_complexity Low_complexity 1 21 0 24 0 0 0 chr21 11454078 11454102 -33453468 + AT_rich Low_complexity Low_complexity 1 24 0 361 233 39 23 chr21 11454356 11454485 -33453085 + L1MEc LINE L1 55 185 -6211 731 320 64 63 chr21 11454610 11455490 -33452080 + L1MEc LINE L1 351 1222 -4983 765 150 23 0 chr21 11455571 11455704 -33451866 - MSTB1 LTR MaLR -296 136 1 232 164 14 14 chr21 11456969 11457042 -33450528 + (TA)n Simple_repeat Simple_repeat 2 74 0 1391 181 87 56 chr21 11457076 11457458 -33450112 - LTR49 LTR ERV1 -168 427 30 2017 122 7 4 chr21 11457458 11457737 -33449833 + AluSq SINE Alu 14 293 -20 1391 181 87 56 chr21 11457737 11457768 -33449802 - LTR49 LTR ERV1 -565 30 1 21 57 0 0 chr21 11458161 11458196 -33449374 + AT_rich Low_complexity Low_complexity 1 35 0 25 51 0 0 chr21 11458223 11458262 -33449308 + AT_rich Low_complexity Low_complexity 1 39 0 461 246 144 5 chr21 11458748 11458935 -33448635 + MER20 DNA MER1_type 4 216 -3 1775 163 58 21 chr21 11459075 11459504 -33448066 - LTR56 LTR ERV1 0 445 1 2212 187 91 11 chr21 11459688 11460238 -33447332 - LTR49 LTR ERV1 -1 594 1 31 58 0 0 chr21 11460804 11460856 -33446714 + AT_rich Low_complexity Low_complexity 1 52 0 317 263 26 20 chr21 11461013 11461165 -33446405 + (TA)n Simple_repeat Simple_repeat 2 154 0 26 0 0 0 chr21 11461280 11461306 -33446264 + AT_rich Low_complexity Low_complexity 1 26 0 13436 40 1 0 chr21 11461394 11463138 -33444432 - L1PA2 LINE L1 -1961 4185 2440 9971 31 0 2 chr21 11463138 11465105 -33442465 + L1PA2 LINE L1 4190 6155 0 22 35 0 0 chr21 11465105 11465134 -33442436 + AT_rich Low_complexity Low_complexity 1 29 0 189 0 0 0 chr21 11465201 11465222 -33442348 + (TAAAA)n Simple_repeat Simple_repeat 2 22 0 1236 253 46 10 chr21 11465938 11466353 -33441217 - MER54A LTR ERVL 0 901 472 2072 118 74 15 chr21 11466391 11466729 -33440841 - THE1B LTR MaLR 0 364 7 1499 214 51 2 chr21 11466738 11467131 -33440439 - MER54A LTR ERVL -489 412 1 1600 209 0 10 chr21 11468306 11468608 -33438962 - AluJo SINE Alu -3 309 11 1303 235 47 72 chr21 11469595 11469837 -33437733 - MLT1D LTR MaLR 0 505 258 2150 102 7 7 chr21 11469837 11470130 -33437440 - AluSc SINE Alu -16 293 1 1303 235 47 72 chr21 11470130 11470401 -33437169 - MLT1D LTR MaLR -247 258 5 472 213 22 0 chr21 11470496 11470632 -33436938 + GA-rich Low_complexity Low_complexity 2 140 0 1749 242 37 69 chr21 11470642 11471236 -33436334 + MER77 LTR ERV1 25 599 -6 813 271 65 23 chr21 11472372 11473050 -33434520 - L1MEc LINE L1 -3483 2732 2046 3285 243 41 30 chr21 11473050 11473988 -33433582 + Tigger6a DNA MER2_type 2 955 -642 1731 192 3 7 chr21 11473988 11474295 -33433275 - AluJb SINE Alu -6 306 1 3285 243 41 30 chr21 11474295 11474426 -33433144 + Tigger6a DNA MER2_type 955 1083 0 813 271 65 23 chr21 11474426 11474503 -33433067 - L1MEc LINE L1 -4169 2046 1974 4963 170 8 22 chr21 11474551 11475727 -33431843 + L1PA16 LINE L1 5007 6165 -1 715 278 104 101 chr21 11475729 11475907 -33431663 - L1MEc LINE L1 -4413 1983 1807 2321 114 0 0 chr21 11475907 11476214 -33431356 - AluSg SINE Alu -3 307 1 715 278 104 101 chr21 11476214 11476295 -33431275 - L1MEc LINE L1 -4589 1807 1728 3433 29 0 17 chr21 11476295 11476715 -33430855 + L1PA4 LINE L1 5740 6152 -3 715 278 104 101 chr21 11476715 11477202 -33430368 - L1MEc LINE L1 -4668 1728 1079 835 329 65 16 chr21 11477214 11477943 -33429627 - L1MEc LINE L1 -5483 913 150 385 352 69 30 chr21 11478060 11478395 -33429175 - HAL1b LINE L1 -963 385 38 1351 209 21 78 chr21 11479941 11480328 -33427242 - MLT1A1 LTR MaLR 0 365 1 1990 140 64 3 chr21 11480462 11480805 -33426765 + THE1B LTR MaLR 1 364 0 1872 138 32 11 chr21 11481039 11481322 -33426248 - AluSg SINE Alu -21 289 1 306 338 29 43 chr21 11481426 11481565 -33426005 + MER5A DNA MER1_type 52 188 -1 1112 72 0 0 chr21 11482357 11482496 -33425074 - AluY SINE Alu -17 294 156 243 0 0 0 chr21 11483629 11483656 -33423914 + (T)n Simple_repeat Simple_repeat 1 27 0 320 303 113 21 chr21 11484673 11484911 -33422659 + MIR SINE MIR 3 262 0 2461 69 0 10 chr21 11485334 11485637 -33421933 + AluY SINE Alu 1 300 -11 195 313 15 30 chr21 11485918 11485985 -33421585 + MIR SINE MIR 182 247 -15 304 270 40 43 chr21 11486196 11486401 -33421169 + MIR SINE MIR 8 262 0 201 176 0 0 chr21 11487807 11487841 -33419729 + (TTTA)n Simple_repeat Simple_repeat 4 37 0 2105 67 0 39 chr21 11487899 11488184 -33419386 - AluY SINE Alu 0 311 38 189 0 0 0 chr21 11488771 11488792 -33418778 + (TTGG)n Simple_repeat Simple_repeat 4 24 0 1117 243 73 64 chr21 11488823 11489271 -33418299 - MLT1C LTR MaLR -5 462 3 1987 201 8 2 chr21 11489679 11490077 -33417493 + L1PA16 LINE L1 5764 6163 -3 264 187 67 27 chr21 11490081 11490156 -33417414 + L1ME4a LINE L1 5966 6043 -78 201 147 0 0 chr21 11492371 11492405 -33415165 + (CA)n Simple_repeat Simple_repeat 1 34 0 4837 95 28 0 chr21 11492682 11493183 -33414387 - L1PA13 LINE L1 -7 6156 5627 2561 107 0 27 chr21 11493183 11493557 -33414013 + THE1B LTR MaLR 1 364 0 4837 95 28 0 chr21 11493557 11493778 -33413792 - L1PA13 LINE L1 -536 5627 5414 2578 188 13 15 chr21 11494158 11494845 -33412725 - L1M4 LINE L1 -405 6277 5592 709 233 28 40 chr21 11494864 11495117 -33412453 - L1M4 LINE L1 -2191 4453 4204 5117 188 15 20 chr21 11495122 11496696 -33410874 - L1PA16 LINE L1 -5 6864 5302 * 9698 118 17 29 chr21 11496690 11498156 -33409414 + THE1B-int LTR MaLR 133 1580 0 2539 100 5 24 chr21 11498156 11498527 -33409043 + THE1B LTR MaLR 1 364 0 263 231 22 88 chr21 11498538 11498629 -33408941 + L1PA15-16 LINE L1 1112 1196 -5653 * 6298 226 19 8 chr21 11498580 11500006 -33407564 - L1PA16 LINE L1 -5592 1257 5 603 219 103 0 chr21 11500021 11500176 -33407394 - L1M4 LINE L1 -2448 4196 4026 4601 258 73 45 chr21 11500231 11503045 -33404525 - L1M4c LINE L1 -3653 2991 2 305 319 34 8 chr21 11504084 11504203 -33403367 + L2 LINE L2 3192 3313 0 21 89 0 0 chr21 11504287 11504343 -33403227 + AT_rich Low_complexity Low_complexity 1 56 0 262 331 24 24 chr21 11504400 11504524 -33403046 - MIR SINE MIR -110 152 29 346 320 138 57 chr21 11504656 11505134 -33402436 - MLT1F LTR MaLR -8 534 18 238 255 89 76 chr21 11505208 11505365 -33402205 + MIR SINE MIR 60 218 -44 827 319 88 0 chr21 11506128 11506448 -33401122 - L2 LINE L2 -1646 1668 1321 656 302 32 29 chr21 11506543 11506821 -33400749 + MLT1K LTR MaLR 300 578 -10 366 274 61 17 chr21 11506929 11507058 -33400512 + MIR SINE MIR 37 170 -63 363 319 48 24 chr21 11507054 11507220 -33400350 - MIR SINE MIR -30 232 63 * 268 297 22 72 chr21 11507242 11507380 -33400190 - MER94 DNA DNA 0 134 4 1140 282 96 14 chr21 11507380 11507795 -33399775 - LTR16A LTR ERVL -1 449 1 2314 64 3 14 chr21 11507869 11508165 -33399405 - AluY SINE Alu -18 293 1 22 35 0 0 chr21 11508328 11508357 -33399213 + AT_rich Low_complexity Low_complexity 1 29 0 2545 183 55 6 chr21 11508973 11509465 -33398105 + MLT2B1 LTR ERVL 1 516 -4 225 0 0 0 chr21 11509625 11509650 -33397920 + (TCTA)n Simple_repeat Simple_repeat 4 28 0 3348 94 78 166 chr21 11510658 11511412 -33396158 - LTR12 LTR ERV1 0 688 1 709 213 38 47 chr21 11511626 11511861 -33395709 - pTR5 LTR ERV1 -1463 975 743 2290 68 0 40 chr21 11511910 11512232 -33395338 + AluY SINE Alu 1 309 -2 27 49 0 0 chr21 11513508 11513549 -33394021 + AT_rich Low_complexity Low_complexity 1 41 0 229 152 22 0 chr21 11514559 11514605 -33392965 - HAL1 LINE L1 -134 2373 2327 257 209 22 143 chr21 11514615 11514706 -33392864 + MER77 LTR ERV1 11 90 -515 2629 174 99 36 chr21 11515519 11516184 -33391386 + MER39 LTR ERV1 1 707 0 366 333 57 13 chr21 11516418 11516577 -33390993 - L2 LINE L2 -329 2984 2819 497 223 0 7 chr21 11516714 11516902 -33390668 + MER58A DNA MER1_type 1 223 -1 1443 201 14 10 chr21 11517261 11517554 -33390016 - AluJb SINE Alu -16 296 3 33 43 0 0 chr21 11518196 11518243 -33389327 + AT_rich Low_complexity Low_complexity 1 47 0 312 27 0 0 chr21 11520442 11520479 -33387091 + (TG)n Simple_repeat Simple_repeat 2 38 0 4099 190 33 21 chr21 11521102 11522671 -33384899 + L1MB1 LINE L1 4545 6123 -45 24 77 0 0 chr21 11522726 11522778 -33384792 + AT_rich Low_complexity Low_complexity 1 52 0 2474 65 0 3 chr21 11522805 11523115 -33384455 - AluY SINE Alu -2 309 1 2743 13 0 3 chr21 11523426 11523737 -33383833 - AluYa5 SINE Alu -1 310 1 27 49 0 0 chr21 11524562 11524603 -33382967 + AT_rich Low_complexity Low_complexity 1 41 0 23 33 0 0 chr21 11525253 11525283 -33382287 + AT_rich Low_complexity Low_complexity 1 30 0 24 53 0 0 chr21 11525400 11525438 -33382132 + AT_rich Low_complexity Low_complexity 1 38 0 2039 145 89 8 chr21 11525536 11525908 -33381662 - MSTA LTR MaLR 0 428 27 2469 156 20 0 chr21 11525933 11526330 -33381240 - MSTA-int LTR MaLR 0 1651 1247 594 202 17 6 chr21 11526406 11526579 -33380991 + CT-rich Low_complexity Low_complexity 3 177 0 247 368 40 8 chr21 11526667 11526792 -33380778 - L2 LINE L2 -2 3270 3142 311 0 26 0 chr21 11527144 11527183 -33380387 + (TA)n Simple_repeat Simple_repeat 1 40 0 5438 239 62 26 chr21 11527184 11529203 -33378367 - L1M4 LINE L1 -1355 4791 2700 395 276 94 0 chr21 11529208 11529378 -33378192 - L1M4 LINE L1 -3488 2658 2473 2665 184 4 2 chr21 11529436 11529921 -33377649 - L1MA4 LINE L1 -195 6105 5620 658 221 7 13 chr21 11530062 11530216 -33377354 + L1M4 LINE L1 6 158 -6384 9714 198 43 26 chr21 11530251 11531025 -33376545 - L1MA4 LINE L1 -738 5567 4807 2076 101 18 4 chr21 11531025 11531326 -33376244 - AluSg SINE Alu 0 305 1 9714 198 43 26 chr21 11531326 11533366 -33374204 - L1MA4 LINE L1 -1498 4807 2131 502 271 54 0 chr21 11533479 11533645 -33373925 - L1MB4 LINE L1 0 6180 6006 592 238 60 12 chr21 11533665 11533833 -33373737 - L1M4 LINE L1 -1281 4865 4690 2787 247 71 10 chr21 11533845 11534489 -33373081 - L1MB4 LINE L1 -180 6000 5396 2013 121 0 0 chr21 11534489 11534769 -33372801 - AluSq SINE Alu -31 282 3 2787 247 71 10 chr21 11534769 11535693 -33371877 - L1MB4 LINE L1 -784 5396 4352 1160 265 13 13 chr21 11535683 11536057 -33371513 - L1MB4 LINE L1 -2413 3733 3360 * 2031 126 0 3 chr21 11536619 11536905 -33370665 - AluSq SINE Alu -28 285 1 21 0 0 0 chr21 11536996 11537017 -33370553 + AT_rich Low_complexity Low_complexity 1 21 0 240 184 0 0 chr21 11537029 11537078 -33370492 + (CA)n Simple_repeat Simple_repeat 1 49 0 550 252 47 65 chr21 11537078 11537292 -33370278 - MIR SINE MIR -17 245 36 791 244 72 9 chr21 11537405 11537626 -33369944 - MER46A DNA MER2_type -1 235 1 1890 154 0 24 chr21 11537867 11538165 -33369405 + AluSx SINE Alu 1 291 -21 183 42 0 0 chr21 11538168 11538192 -33369378 + (CAAA)n Simple_repeat Simple_repeat 2 25 0 2191 144 126 5 chr21 11539541 11539984 -33367586 - L1MA4 LINE L1 -3 6297 5801 * 2229 145 36 3 chr21 11539983 11540206 -33367364 + L1M1 LINE L1 5369 5583 -717 399 41 0 0 chr21 11540206 11540255 -33367315 + (CAAAA)n Simple_repeat Simple_repeat 2 50 0 2052 134 0 0 chr21 11540257 11540540 -33367030 + AluSx SINE Alu 21 303 -9 2229 145 36 3 chr21 11540540 11540705 -33366865 + L1M1 LINE L1 5583 5773 -527 10435 214 33 51 chr21 11540774 11541062 -33366508 - L1MC3 LINE L1 -26 7969 7677 329 50 0 0 chr21 11541062 11541102 -33366468 + THE1A LTR MaLR 1 40 -315 10636 94 9 55 chr21 11541102 11542754 -33364816 + THE1A-int LTR MaLR 4 1580 0 2368 103 20 8 chr21 11542754 11543105 -33364465 + THE1A LTR MaLR 1 355 0 10435 214 33 51 chr21 11543105 11547054 -33360516 - L1MC3 LINE L1 -315 7680 2405 1335 77 0 0 chr21 11547054 11547224 -33360346 - AluY SINE Alu -6 305 136 648 115 19 19 chr21 11547224 11547328 -33360242 + LTR1B LTR ERV1 723 826 0 474 190 111 0 chr21 11547328 11547451 -33360119 + MER67B LTR ERV1 60 156 -358 3854 154 82 11 chr21 11547450 11548144 -33359426 - LTR1B LTR ERV1 -83 743 1 306 263 110 25 chr21 11548144 11548262 -33359308 - MER67B LTR ERV1 -502 159 32 1957 129 16 19 chr21 11548670 11548981 -33358589 - AluY SINE Alu -1 310 1 1920 161 0 0 chr21 11549336 11549635 -33357935 + AluSx SINE Alu 1 299 -13 554 331 60 40 chr21 11551714 11552113 -33355457 - LTR33 LTR ERVL -114 407 1 2052 176 36 28 chr21 11552333 11552878 -33354692 + MLT2A2 LTR ERVL 1 551 -3 914 274 164 34 chr21 11552881 11553798 -33353772 - HAL1b LINE L1 -105 1243 208 2320 38 0 0 chr21 11553931 11554194 -33353376 + AluY SINE Alu 1 263 -48 230 0 33 0 chr21 11554208 11554238 -33353332 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 231 337 127 17 chr21 11554431 11554612 -33352958 + L3 LINE CR1 327 527 -1050 30 0 0 0 chr21 11554619 11554649 -33352921 + AT_rich Low_complexity Low_complexity 1 30 0 591 367 129 23 chr21 11554857 11555629 -33351941 + L3 LINE CR1 623 1476 -101 407 319 145 0 chr21 11555768 11555934 -33351636 + MIR SINE MIR 39 228 -34 319 146 0 36 chr21 11556388 11556443 -33351127 + MER39 LTR ERV1 655 707 0 203 169 0 85 chr21 11556624 11556683 -33350887 + CT-rich Low_complexity Low_complexity 1 54 0 317 307 144 23 chr21 11556736 11556951 -33350619 - HAL1 LINE L1 0 2507 2267 227 312 8 56 chr21 11556999 11557124 -33350446 + L2 LINE L2 3195 3313 0 755 230 8 60 chr21 11557176 11557411 -33350159 - HAL1 LINE L1 -754 1753 1531 812 305 79 16 chr21 11557412 11557980 -33349590 - HAL1 LINE L1 -868 1639 1036 378 269 123 15 chr21 11557970 11558238 -33349332 - HAL1 LINE L1 -1240 1267 971 * 2091 103 0 7 chr21 11559241 11559543 -33348027 + AluY SINE Alu 1 300 0 1136 258 31 123 chr21 11559591 11560145 -33347425 + MLT1E2 LTR MaLR 1 503 -2 2036 128 0 0 chr21 11560151 11560572 -33346998 + AluSq SINE Alu 3 423 0 321 26 0 0 chr21 11562069 11562107 -33345463 + (TG)n Simple_repeat Simple_repeat 1 38 0 33 80 0 0 chr21 11563555 11563630 -33343940 + AT_rich Low_complexity Low_complexity 1 75 0 1925 121 7 11 chr21 11564719 11565000 -33342570 - AluSx SINE Alu -32 280 1 863 125 0 0 chr21 11565025 11565153 -33342417 - AluSg/x SINE Alu -5 305 178 23 0 0 0 chr21 11565587 11565610 -33341960 + AT_rich Low_complexity Low_complexity 1 23 0 2207 108 15 6 chr21 11565610 11565952 -33341618 - L1PB1 LINE L1 -3 6148 5804 2451 219 48 76 chr21 11566014 11566804 -33340766 - L1MB1 LINE L1 0 6168 5401 1721 232 37 34 chr21 11566806 11567155 -33340415 + L1M4 LINE L1 4803 5149 -997 1844 118 17 37 chr21 11567155 11567451 -33340119 - AluSc SINE Alu -14 295 6 2195 128 0 10 chr21 11567456 11567769 -33339801 - AluSx SINE Alu -2 310 1 1721 232 37 34 chr21 11567769 11567981 -33339589 + L1M4 LINE L1 5152 5372 -774 825 248 30 52 chr21 11567982 11568298 -33339272 - L1MEc LINE L1 -3649 3292 3028 2557 52 0 0 chr21 11568298 11568604 -33338966 - AluY SINE Alu -5 306 1 825 248 30 52 chr21 11568604 11568769 -33338801 - L1MEc LINE L1 -3913 3028 2861 1874 285 92 69 chr21 11568770 11569918 -33337652 - L1MEc LINE L1 -5231 1192 19 2441 60 0 3 chr21 11570316 11570616 -33336954 + AluY SINE Alu 2 300 -11 2288 195 45 10 chr21 11570688 11571180 -33336390 - LTR22 LTR ERVK 0 509 1 219 209 136 64 chr21 11571639 11571749 -33335821 - MIR SINE MIR -56 206 89 210 286 181 8 chr21 11572675 11572808 -33334762 + MIR SINE MIR 51 206 -56 2426 75 0 0 chr21 11573002 11573296 -33334274 - AluY SINE Alu -17 294 1 187 280 65 108 chr21 11573391 11573484 -33334086 - L3 LINE CR1 -50 1527 1439 3450 72 13 4 chr21 11573936 11574409 -33333161 + MER11A LTR ERVK 790 1266 0 7082 191 6 39 chr21 11574411 11575035 -33332535 - L1P LINE L1 -1226 4920 4277 1711 191 3 0 chr21 11575035 11575328 -33332242 - AluJb SINE Alu -18 294 1 7082 191 6 39 chr21 11575328 11575811 -33331759 - L1P LINE L1 -1869 4277 3876 2074 130 3 3 chr21 11575811 11576118 -33331452 - AluSc SINE Alu -2 307 1 7082 191 6 39 chr21 11576118 11576572 -33330998 - L1P LINE L1 -2270 3876 3409 514 301 57 66 chr21 11576594 11576929 -33330641 - MLT1H1 LTR MaLR -204 351 20 2450 74 0 0 chr21 11576930 11577226 -33330344 - AluY SINE Alu -15 296 1 285 215 115 20 chr21 11577233 11577411 -33330159 + L1ME LINE L1 5677 5866 -312 4148 184 11 25 chr21 11577442 11578254 -33329316 - L1MA8 LINE L1 -172 6119 5322 1958 149 10 0 chr21 11578254 11578550 -33329020 - AluSq SINE Alu -14 299 1 4148 184 11 25 chr21 11578550 11578757 -33328813 - L1MA8 LINE L1 -969 5322 5114 21 89 0 0 chr21 11579300 11579356 -33328214 + AT_rich Low_complexity Low_complexity 1 56 0 336 48 0 0 chr21 11579838 11579880 -33327690 + (CA)n Simple_repeat Simple_repeat 1 42 0 207 139 0 0 chr21 11580476 11580512 -33327058 + (TTG)n Simple_repeat Simple_repeat 2 37 0 1835 196 52 28 chr21 11580633 11581020 -33326550 - MSTD LTR MaLR 0 396 1 328 258 0 86 chr21 11581137 11581265 -33326305 + MER5B DNA MER1_type 19 135 -43 280 325 94 49 chr21 11581530 11581733 -33325837 - MIR SINE MIR -3 259 48 2386 57 0 0 chr21 11582850 11583178 -33324392 + AluY SINE Alu 1 328 0 240 35 0 0 chr21 11583988 11584017 -33323553 + (CA)n Simple_repeat Simple_repeat 2 30 0 1749 106 4 0 chr21 11584561 11584797 -33322773 - AluSx SINE Alu -16 296 60 3202 69 7 0 chr21 11584797 11585231 -33322339 - L1PA8 LINE L1 -2 6170 5734 1757 129 7 41 chr21 11585619 11585913 -33321657 - AluSx SINE Alu -18 294 11 26 30 0 0 chr21 11586114 11586147 -33321423 + AT_rich Low_complexity Low_complexity 1 33 0 27 49 0 0 chr21 11587134 11587175 -33320395 + AT_rich Low_complexity Low_complexity 1 41 0 2206 114 3 0 chr21 11587297 11587594 -33319976 + AluSq SINE Alu 1 298 -15 612 316 43 8 chr21 11587807 11588063 -33319507 - LTR16A1 LTR ERVL -20 437 173 21 0 0 0 chr21 11588813 11588834 -33318736 + AT_rich Low_complexity Low_complexity 1 21 0 267 242 0 0 chr21 11588852 11588914 -33318656 - MIR SINE MIR -14 248 187 2154 130 0 0 chr21 11589866 11590159 -33317411 + AluSx SINE Alu 1 293 -19 22 0 0 0 chr21 11590164 11590186 -33317384 + AT_rich Low_complexity Low_complexity 1 22 0 26 30 0 0 chr21 11590221 11590254 -33317316 + AT_rich Low_complexity Low_complexity 1 33 0 216 67 0 0 chr21 11591269 11591299 -33316271 + (CA)n Simple_repeat Simple_repeat 1 30 0 597 294 43 7 chr21 11592130 11592406 -33315164 + L1ME4a LINE L1 5566 5851 -270 27 49 0 0 chr21 11592608 11592649 -33314921 + AT_rich Low_complexity Low_complexity 1 41 0 47 73 0 0 chr21 11593140 11593236 -33314334 + AT_rich Low_complexity Low_complexity 1 96 0 282 29 0 0 chr21 11593354 11593389 -33314181 + (GA)n Simple_repeat Simple_repeat 1 35 0 23 0 0 0 chr21 11593841 11593864 -33313706 + AT_rich Low_complexity Low_complexity 1 23 0 209 319 14 0 chr21 11594051 11594123 -33313447 + (TA)n Simple_repeat Simple_repeat 1 73 0 1197 85 0 0 chr21 11594234 11594387 -33313183 + AluSp SINE Alu 130 282 -31 180 0 0 0 chr21 11594394 11594414 -33313156 + (TTAA)n Simple_repeat Simple_repeat 4 23 0 2126 98 35 0 chr21 11594425 11594711 -33312859 - AluSp SINE Alu -17 296 1 839 255 90 17 chr21 11594723 11595080 -33312490 + Charlie2 DNA MER1_type 2439 2821 -41 449 335 79 32 chr21 11595548 11595990 -33311580 - L2 LINE L2 -624 2690 2228 5079 159 42 29 chr21 11597375 11599070 -33308500 + L1MA5 LINE L1 4553 6271 -29 9067 117 5 1 chr21 11599070 11600352 -33307218 - HSMAR1 DNA Mariner 0 1287 1 5079 159 42 29 chr21 11600352 11600381 -33307189 + L1MA5 LINE L1 6271 6298 -2 1033 201 34 8 chr21 11600871 11601110 -33306460 - Zaphod DNA AcHobo -8 4023 3779 219 276 102 31 chr21 11602479 11602606 -33304964 - L2 LINE L2 -1 3271 3136 36 0 0 0 chr21 11602840 11602876 -33304694 + AT_rich Low_complexity Low_complexity 1 36 0 699 266 6 0 chr21 11604640 11604813 -33302757 - FRAM SINE Alu -5 171 1 975 249 119 103 chr21 11605046 11605543 -33302027 + MLT1H1 LTR MaLR 1 549 0 186 43 0 0 chr21 11605697 11605720 -33301850 + (TC)n Simple_repeat Simple_repeat 2 24 0 189 171 0 0 chr21 11605721 11605756 -33301814 + (TA)n Simple_repeat Simple_repeat 1 35 0 219 139 0 0 chr21 11606179 11606215 -33301355 + (CA)n Simple_repeat Simple_repeat 2 37 0 31 44 0 0 chr21 11606781 11606826 -33300744 + AT_rich Low_complexity Low_complexity 1 45 0 26 88 0 0 chr21 11607365 11607433 -33300137 + AT_rich Low_complexity Low_complexity 1 68 0 23 0 0 53 chr21 11608028 11608045 -33299525 + AT_rich Low_complexity Low_complexity 1 17 -19 2031 124 3 20 chr21 11608045 11608351 -33299219 - AluSq SINE Alu -12 301 1 23 0 0 53 chr21 11608351 11608371 -33299199 + AT_rich Low_complexity Low_complexity 17 36 0 280 341 11 0 chr21 11608909 11608997 -33298573 + L2 LINE L2 3223 3311 -2 715 244 311 28 chr21 11609082 11609471 -33298099 + L2 LINE L2 2321 2819 -495 1214 314 58 24 chr21 11609626 11610088 -33297482 + L2 LINE L2 2815 3292 -21 2220 104 3 0 chr21 11610092 11610380 -33297190 + AluSc SINE Alu 5 293 -16 2256 132 5 27 chr21 11611475 11611847 -33295723 - THE1B LTR MaLR 0 364 1 205 257 86 0 chr21 11611907 11611977 -33295593 - MIR SINE MIR 0 262 187 413 297 95 0 chr21 11612269 11612417 -33295153 - MIR SINE MIR -17 245 84 26 0 0 0 chr21 11612537 11612563 -33295007 + AT_rich Low_complexity Low_complexity 1 26 0 189 147 0 0 chr21 11614982 11615016 -33292554 + (GAAA)n Simple_repeat Simple_repeat 3 36 0 271 43 0 43 chr21 11615101 11615148 -33292422 + (TTG)n Simple_repeat Simple_repeat 1 45 0 210 143 0 0 chr21 11615361 11615396 -33292174 + (T)n Simple_repeat Simple_repeat 1 35 0 248 172 0 16 chr21 11616939 11617003 -33290567 + (CA)n Simple_repeat Simple_repeat 2 64 0 336 24 0 0 chr21 11617062 11617103 -33290467 + (TG)n Simple_repeat Simple_repeat 2 42 0 186 118 0 0 chr21 11617891 11617925 -33289645 + (TAGA)n Simple_repeat Simple_repeat 4 37 0 2396 142 37 40 chr21 11617969 11618398 -33289172 + MSTA LTR MaLR 1 428 0 208 158 35 18 chr21 11619403 11619460 -33288110 + T-rich Low_complexity Low_complexity 2 59 0 196 325 88 6 chr21 11619528 11619661 -33287909 + MIR SINE MIR 8 145 -63 1488 208 0 0 chr21 11621877 11622151 -33285419 + AluJo SINE Alu 30 303 -9 571 99 0 0 chr21 11622154 11622235 -33285335 + MER72 LTR ERV1 642 722 0 180 352 32 48 chr21 11622645 11622770 -33284800 + MER5A DNA MER1_type 30 152 -37 257 235 47 0 chr21 11623580 11623665 -33283905 + L1MC4 LINE L1 6614 6702 -1340 1473 173 123 62 chr21 11623691 11624032 -33283538 - MLT2D LTR ERVL -48 366 5 198 71 0 0 chr21 11624581 11624609 -33282961 + (CA)n Simple_repeat Simple_repeat 1 28 0 4972 187 73 55 chr21 11625189 11626700 -33280870 - MER52A LTR ERV1 0 1755 1 2399 66 0 10 chr21 11627352 11627654 -33279916 - AluY SINE Alu -12 299 1 402 101 0 0 chr21 11627670 11627739 -33279831 + (CA)n Simple_repeat Simple_repeat 2 70 0 285 204 0 0 chr21 11627739 11627783 -33279787 - FAM SINE Alu -69 106 63 2039 116 0 3 chr21 11627909 11628193 -33279377 + AluSq SINE Alu 1 283 -30 2469 188 112 65 chr21 11628654 11628746 -33278824 + L1MA9 LINE L1 5519 5605 -707 1867 158 7 0 chr21 11628746 11629037 -33278533 + AluSx SINE Alu 1 293 -19 2469 188 112 65 chr21 11629037 11629668 -33277902 + L1MA9 LINE L1 5605 6276 -36 733 191 0 22 chr21 11630023 11630159 -33277411 + AluJo/FLAM SINE Alu 1 133 -179 383 179 0 0 chr21 11630160 11630227 -33277343 + AluJ/FRAM SINE Alu 228 294 -8 231 189 0 0 chr21 11631002 11631039 -33276531 + 5S rRNA rRNA 2 38 -83 709 259 121 17 chr21 11631044 11631482 -33276088 + L2 LINE L2 2413 2957 -357 347 327 23 22 chr21 11631503 11631786 -33275784 - MLT1J2 LTR MaLR -14 436 84 2131 109 7 0 chr21 11631974 11632257 -33275313 - AluSx SINE Alu -27 285 1 405 316 108 58 chr21 11632261 11632641 -33274929 + MLT1J2 LTR MaLR 33 431 -19 197 290 9 37 chr21 11632651 11632758 -33274812 + L2 LINE L2 3085 3188 -125 829 251 23 32 chr21 11632768 11632987 -33274583 + MER58A DNA MER1_type 2 218 -6 523 252 16 8 chr21 11632994 11633117 -33274453 + L2 LINE L2 3190 3313 0 941 235 118 76 chr21 11633134 11633619 -33273951 + MLT1D LTR MaLR 1 505 0 418 287 115 6 chr21 11634205 11634379 -33273191 + MLT1L LTR MaLR 412 604 -11 24 32 0 0 chr21 11634844 11634875 -33272695 + AT_rich Low_complexity Low_complexity 1 31 0 305 216 108 29 chr21 11635664 11635766 -33271804 + MLT1A1 LTR MaLR 20 129 -236 1188 274 62 32 chr21 11635896 11636480 -33271090 - HAL1b LINE L1 -736 612 12 447 277 19 19 chr21 11636763 11636976 -33270594 + L1MC3 LINE L1 3275 3487 -2659 1547 173 74 28 chr21 11637051 11637403 -33270167 + THE1C LTR MaLR 5 372 -3 6955 127 40 52 chr21 11637406 11638744 -33268826 + THE1C-int LTR MaLR 1 1314 -266 324 49 0 0 chr21 11638744 11638785 -33268785 - MLT2A2 LTR ERVL 0 453 413 216 0 0 0 chr21 11638786 11638810 -33268760 + (TA)n Simple_repeat Simple_repeat 2 25 0 2297 89 3 0 chr21 11638814 11639127 -33268443 - MLT2A2 LTR ERVL -139 314 1 39181 95 11 8 chr21 11639127 11644760 -33262810 - HERVL-A2-A2 LTR ERVL 0 5654 1 3167 107 16 7 chr21 11644760 11645209 -33262361 - MLT2A2 LTR ERVL 0 453 1 1609 119 15 4 chr21 11645209 11645477 -33262093 + THE1C-int LTR MaLR 1310 1580 0 1579 161 79 37 chr21 11645479 11645834 -33261736 + THE1C LTR MaLR 3 372 -3 351 0 0 0 chr21 11645834 11645873 -33261697 + (TCTA)n Simple_repeat Simple_repeat 4 42 0 700 14 88 7 chr21 11645887 11646034 -33261536 + (TA)n Simple_repeat Simple_repeat 1 159 0 1675 229 76 19 chr21 11646034 11646466 -33261104 - MLT2B1 LTR ERVL -63 457 1 4136 186 21 10 chr21 11646508 11647334 -33260236 - ERVL-B1 LTR ERVL -235 5529 4695 1301 291 67 4 chr21 11647330 11647869 -33259701 - ERVL-B1 LTR ERVL -5084 591 5 * 959 246 100 27 chr21 11647873 11648286 -33259284 - MLT2B1 LTR ERVL 0 464 1 4029 213 74 75 chr21 11648330 11650334 -33257236 + L1MC3 LINE L1 3530 4671 -1475 806 118 0 0 chr21 11650334 11650473 -33257097 - AluY SINE Alu 0 310 172 4029 213 74 75 chr21 11650473 11651206 -33256364 + L1MC3 LINE L1 4671 5403 -743 1255 219 19 41 chr21 11651210 11651529 -33256041 + MSTD LTR MaLR 84 395 -1 445 98 12 12 chr21 11651530 11651612 -33255958 + (TCTA)n Simple_repeat Simple_repeat 2 83 0 2229 140 5 27 chr21 11652658 11653030 -33254540 + THE1B LTR MaLR 1 364 0 50 42 0 0 chr21 11654296 11654367 -33253203 + AT_rich Low_complexity Low_complexity 1 71 0 1303 78 0 31 chr21 11654458 11654649 -33252921 + L1PA8 LINE L1 5987 6171 -1 204 179 0 0 chr21 11654946 11654985 -33252585 + (TATATG)n Simple_repeat Simple_repeat 2 40 0 199 93 47 0 chr21 11655601 11655644 -33251926 + (TA)n Simple_repeat Simple_repeat 1 45 0 275 322 30 10 chr21 11655685 11655795 -33251775 - MIR SINE MIR -63 145 38 21 0 0 0 chr21 11655908 11655929 -33251641 + AT_rich Low_complexity Low_complexity 1 21 0 200 359 142 0 chr21 11656991 11657097 -33250473 + MIR SINE MIR 17 137 -125 25 0 0 0 chr21 11657183 11657208 -33250362 + AT_rich Low_complexity Low_complexity 1 25 0 29 0 0 0 chr21 11657267 11657296 -33250274 + AT_rich Low_complexity Low_complexity 1 29 0 29 0 0 0 chr21 11657320 11657349 -33250221 + AT_rich Low_complexity Low_complexity 1 29 0 252 0 0 0 chr21 11657674 11657702 -33249868 + (T)n Simple_repeat Simple_repeat 1 28 0 4129 189 42 9 chr21 11658170 11658232 -33249338 - L1MC2 LINE L1 -6 6338 6280 2343 87 7 0 chr21 11658232 11658531 -33249039 + AluY SINE Alu 1 301 -10 4129 189 42 9 chr21 11658531 11659364 -33248206 - L1MC2 LINE L1 -64 6280 5413 2010 105 36 0 chr21 11659373 11659678 -33247892 - L1PA16 LINE L1 -9 6157 5842 673 137 86 0 chr21 11659678 11659853 -33247717 - L1MC2 LINE L1 -743 5403 5224 2366 103 0 0 chr21 11661039 11661340 -33246230 - AluSq SINE Alu -12 301 1 964 203 17 0 chr21 11661725 11661902 -33245668 - AluSg/x SINE Alu -1 309 130 2166 133 0 9 chr21 11661902 11662217 -33245353 - AluSx SINE Alu 0 312 1 553 89 13 0 chr21 11662627 11662706 -33244864 - MADE1 DNA Mariner 0 80 1 910 266 22 0 chr21 11664052 11664274 -33243296 + MIR SINE MIR 36 262 0 526 220 55 0 chr21 11664839 11664948 -33242622 + MIR3 SINE MIR 82 196 -12 205 200 62 113 chr21 11665198 11665278 -33242292 + L2 LINE L2 3197 3272 0 225 0 0 0 chr21 11665736 11665761 -33241809 + (TTTG)n Simple_repeat Simple_repeat 2 26 0 21 0 0 0 chr21 11666235 11666256 -33241314 + AT_rich Low_complexity Low_complexity 1 21 0 23 68 0 0 chr21 11666892 11666936 -33240634 + AT_rich Low_complexity Low_complexity 1 44 0 190 299 75 47 chr21 11667864 11667971 -33239599 + L2 LINE L2 3197 3306 -7 234 338 203 23 chr21 11668304 11668437 -33239133 - MIR3 SINE MIR -6 202 46 32 0 0 0 chr21 11668856 11668888 -33238682 + AT_rich Low_complexity Low_complexity 1 32 0 1025 244 168 66 chr21 11670167 11670654 -33236916 - MLT1F LTR MaLR 0 542 6 258 32 0 0 chr21 11671231 11671262 -33236308 + (TA)n Simple_repeat Simple_repeat 1 31 0 * 531 31 0 0 chr21 11671261 11671326 -33236244 + (GA)n Simple_repeat Simple_repeat 2 66 0 429 261 27 9 chr21 11671328 11671439 -33236131 + MER5B DNA MER1_type 63 175 -3 10324 198 10 79 chr21 11671678 11673915 -33233655 + L1 LINE L1 2286 4435 -1711 1150 157 0 0 chr21 11673915 11674093 -33233477 + AluSp SINE Alu 136 313 0 10324 198 10 79 chr21 11674093 11674828 -33232742 + L1 LINE L1 4435 5219 -927 470 127 7 72 chr21 11674829 11675125 -33232445 + (CCCTAA)n Simple_repeat Simple_repeat 1 276 0 2688 155 2 14 chr21 11675269 11675786 -33231784 - TAR1 Satellite telomeric -43 2068 1558 385 275 33 0 chr21 11677049 11677169 -33230401 + MIR SINE MIR 84 207 -55 693 270 0 27 chr21 11677177 11677362 -33230208 - MIR SINE MIR -6 256 77 236 30 30 0 chr21 11677378 11677411 -33230159 + (TTCA)n Simple_repeat Simple_repeat 3 36 0 223 226 19 0 chr21 11678084 11678137 -33229433 - L3b LINE CR1 -195 1388 1335 519 285 40 7 chr21 11678388 11678539 -33229031 - MIR3 SINE MIR -34 174 19 352 286 29 21 chr21 11678796 11678936 -33228634 - MIR SINE MIR -87 175 35 215 208 0 21 chr21 11679193 11679241 -33228329 + MIR SINE MIR 206 252 -10 272 284 51 60 chr21 11679891 11679991 -33227579 + MIR3 SINE MIR 79 178 -30 567 251 221 5 chr21 11680531 11680730 -33226840 - MIR SINE MIR -7 255 14 388 292 30 46 chr21 11681016 11681156 -33226414 - MIR SINE MIR -48 160 28 2327 92 0 3 chr21 11681159 11681462 -33226108 - AluSg SINE Alu -8 302 1 232 274 113 28 chr21 11682139 11682245 -33225325 + L2 LINE L2 3158 3272 0 556 314 41 18 chr21 11682547 11682767 -33224803 + MIR SINE MIR 2 226 -36 1201 144 33 37 chr21 11682889 11683104 -33224466 - AluJo SINE Alu -98 214 1 330 301 137 77 chr21 11683494 11684261 -33223309 - L1M2 LINE L1 -5599 1250 438 589 241 99 0 chr21 11684526 11684667 -33222903 + FRAM SINE Alu 1 155 -21 2076 122 0 3 chr21 11684669 11684963 -33222607 + AluSx SINE Alu 1 293 -19 22 0 0 0 chr21 11685239 11685261 -33222309 + AT_rich Low_complexity Low_complexity 1 22 0 24 0 0 0 chr21 11685336 11685360 -33222210 + AT_rich Low_complexity Low_complexity 1 24 0 615 324 109 30 chr21 11685487 11685962 -33221608 + L1MDb LINE L1 104 616 -5793 424 293 79 68 chr21 11685969 11686378 -33221192 + L1MDb LINE L1 363 740 -5669 300 290 202 73 chr21 11686513 11687181 -33220389 + L1M2 LINE L1 653 1406 -5443 473 271 60 57 chr21 11687797 11688180 -33219390 - HSREP522 Satellite telomeric 0 504 121 229 310 17 35 chr21 11689415 11689589 -33217981 + GA-rich Low_complexity Low_complexity 5 175 0 318 183 0 14 chr21 11690362 11690433 -33217137 - L1 LINE L1 -3308 2838 2769 219 36 0 0 chr21 11690440 11690468 -33217102 + (GTTTG)n Simple_repeat Simple_repeat 2 29 0 1724 142 32 4 chr21 11690468 11690744 -33216826 - AluSx SINE Alu -27 285 2 2188 218 14 10 chr21 11690744 11691239 -33216331 - L1 LINE L1 -2203 3943 3447 1668 243 16 0 chr21 11691241 11691612 -33215958 - MSTB LTR MaLR -49 377 1 3193 201 21 3 chr21 11691617 11692233 -33215337 - MSTB-int LTR MaLR -5 1646 1020 4369 273 37 26 chr21 11692235 11693804 -33213766 - L1P LINE L1 -2696 3450 1860 2029 142 0 0 chr21 11693804 11694099 -33213471 + AluSx SINE Alu 1 295 -17 4369 273 37 26 chr21 11694099 11694224 -33213346 - L1P LINE L1 -4286 1860 1738 1652 176 67 34 chr21 11694237 11696000 -33211570 + SVA Other Other 432 868 -518 5545 122 45 47 chr21 11696013 11697009 -33210561 + SVA Other Other 391 1384 -2 351 0 0 0 chr21 11697038 11697077 -33210493 + (TG)n Simple_repeat Simple_repeat 2 40 0 331 310 63 7 chr21 11698464 11698606 -33208964 + L2 LINE L2 2722 2871 -443 273 273 0 0 chr21 11699412 11699500 -33208070 - L1MC4 LINE L1 -1339 6703 6616 22 56 0 0 chr21 11702390 11702426 -33205144 + AT_rich Low_complexity Low_complexity 1 36 0 339 305 91 13 chr21 11702572 11702870 -33204700 + L1ME4a LINE L1 5518 5838 -283 366 399 81 19 chr21 11703347 11703670 -33203900 - L2 LINE L2 0 3272 2930 938 337 87 33 chr21 11703678 11704348 -33203222 + L1MEc LINE L1 40 745 -5651 339 239 36 72 chr21 11704352 11704490 -33203080 + L1MEc LINE L1 994 1126 -5270 1222 226 40 99 chr21 11704643 11704884 -33202686 + L1MEc LINE L1 1944 2198 -4017 303 28 0 0 chr21 11704884 11704920 -33202650 + (TA)n Simple_repeat Simple_repeat 1 36 0 1222 226 40 99 chr21 11704920 11705518 -33202052 + L1MEc LINE L1 2198 2691 -3524 748 293 45 35 chr21 11705535 11705935 -33201635 + L1MEc LINE L1 2791 3194 -3021 1391 249 19 5 chr21 11705948 11706305 -33201265 + MLT1A1 LTR MaLR 6 396 0 297 302 68 16 chr21 11706322 11706574 -33200996 + L1MEc LINE L1 3230 3494 -2721 4100 82 6 10 chr21 11706575 11707547 -33200023 + L1P2 LINE L1 4851 5816 -338 261 306 25 19 chr21 11707782 11707939 -33199631 + L1ME3A LINE L1 5770 5927 -243 180 0 0 0 chr21 11708137 11708157 -33199413 + (TTA)n Simple_repeat Simple_repeat 2 21 0 1038 41 0 0 chr21 11708159 11708303 -33199267 - AluY SINE Alu 0 304 161 449 154 11 0 chr21 11708335 11708426 -33199144 + (CA)n Simple_repeat Simple_repeat 1 92 0 24 85 0 0 chr21 11709832 11709891 -33197679 + AT_rich Low_complexity Low_complexity 1 59 0 358 221 307 21 chr21 11710583 11710723 -33196847 + MER5A DNA MER1_type 9 188 -1 1679 164 43 16 chr21 11711417 11711721 -33195849 - AluSx SINE Alu 0 312 1 23 33 0 0 chr21 11711723 11711753 -33195817 + AT_rich Low_complexity Low_complexity 1 30 0 21 36 0 0 chr21 11712278 11712306 -33195264 + AT_rich Low_complexity Low_complexity 1 28 0 186 300 114 29 chr21 11712500 11712570 -33195000 - L2 LINE L2 -29 3243 3168 * 205 339 110 8 chr21 11712562 11712689 -33194881 + L2 LINE L2 2946 3085 -228 287 305 81 46 chr21 11713115 11713312 -33194258 - MIR SINE MIR -50 212 9 1920 101 0 4 chr21 11713939 11714197 -33193373 - AluY SINE Alu -5 306 50 231 368 90 38 chr21 11715119 11715486 -33192084 - L2 LINE L2 -339 2975 2590 21 57 0 0 chr21 11715985 11716020 -33191550 + AT_rich Low_complexity Low_complexity 1 35 0 24 67 0 0 chr21 11716855 11716900 -33190670 + AT_rich Low_complexity Low_complexity 1 45 0 685 249 61 0 chr21 11717167 11717364 -33190206 - L1MA4 LINE L1 -4 6296 6088 24 0 0 0 chr21 11717450 11717474 -33190096 + AT_rich Low_complexity Low_complexity 1 24 0 23 0 0 0 chr21 11717722 11717745 -33189825 + AT_rich Low_complexity Low_complexity 1 23 0 27 29 0 0 chr21 11718312 11718346 -33189224 + AT_rich Low_complexity Low_complexity 1 34 0 1723 68 0 5 chr21 11718516 11718735 -33188835 + AluY SINE Alu 84 301 -10 1822 148 34 3 chr21 11718745 11719043 -33188527 + AluSc SINE Alu 1 307 -2 25 0 0 0 chr21 11719056 11719081 -33188489 + AT_rich Low_complexity Low_complexity 1 25 0 21 36 0 0 chr21 11719211 11719239 -33188331 + AT_rich Low_complexity Low_complexity 1 28 0 644 202 9 0 chr21 11719773 11719887 -33187683 - FLAM_A SINE Alu -15 118 4 2355 60 10 3 chr21 11720764 11721063 -33186507 - AluY SINE Alu -10 301 1 219 198 8 83 chr21 11722818 11722939 -33184631 + A-rich Low_complexity Low_complexity 5 116 0 398 378 5 15 chr21 11723403 11723599 -33183971 + MIR SINE MIR 63 256 -6 555 209 0 27 chr21 11723762 11723872 -33183698 + FLAM_A SINE Alu 4 110 -32 1032 189 53 66 chr21 11724335 11724579 -33182991 - MER21A LTR ERV1 -24 907 667 * 3149 194 49 23 chr21 11724573 11725232 -33182338 + MER44D DNA MER2_type 30 705 0 324 0 0 0 chr21 11725238 11725274 -33182296 + (TG)n Simple_repeat Simple_repeat 1 36 0 * 477 50 0 0 chr21 11725273 11725333 -33182237 + (GA)n Simple_repeat Simple_repeat 1 60 0 405 350 93 19 chr21 11725686 11726009 -33181561 + L2 LINE L2 2026 2372 -942 23 0 0 0 chr21 11726205 11726228 -33181342 + AT_rich Low_complexity Low_complexity 1 23 0 1814 212 55 23 chr21 11726285 11726757 -33180813 + LTR22B LTR ERVK 1 487 -5 1800 122 25 7 chr21 11726765 11727044 -33180526 + HERVK22 LTR ERVK 12 295 -6542 817 247 54 0 chr21 11727052 11727238 -33180332 + MER58A DNA MER1_type 29 224 0 257 284 0 0 chr21 11727440 11727507 -33180063 + MLT1L LTR MaLR 144 210 -405 600 188 17 0 chr21 11727507 11727624 -33179946 + AluSp/q SINE Alu 171 289 -24 1739 160 21 4 chr21 11727993 11728297 -33179273 - AluSq SINE Alu 0 309 1 22 35 0 0 chr21 11729719 11729748 -33177822 + AT_rich Low_complexity Low_complexity 1 29 0 1602 195 7 0 chr21 11729869 11730161 -33177409 + AluSx SINE Alu 3 296 -16 19252 33 0 0 chr21 11730161 11733262 -33174308 + L1PA2 LINE L1 3054 6155 0 248 253 118 109 chr21 11734160 11734381 -33173189 + Charlie1 DNA MER1_type 5 227 -2534 3499 57 15 4 chr21 11734550 11735005 -33172565 - L1PA4 LINE L1 0 6155 5696 1899 130 14 3 chr21 11735007 11735300 -33172270 - AluY SINE Alu -15 296 1 361 205 331 0 chr21 11736206 11736333 -33171237 + MER5A DNA MER1_type 16 184 -5 1991 110 0 0 chr21 11740142 11740415 -33167155 + AluY SINE Alu 1 273 -38 1639 188 17 3 chr21 11740529 11740821 -33166749 - AluSx SINE Alu -16 296 1 369 0 0 0 chr21 11741006 11741047 -33166523 + (CA)n Simple_repeat Simple_repeat 1 41 0 6598 74 31 3 chr21 11741857 11742727 -33164843 + MER11D LTR ERVK 1 894 -3 1634 187 0 7 chr21 11743851 11744145 -33163425 + AluSg SINE Alu 3 294 -16 289 354 127 25 chr21 11744773 11744931 -33162639 - L2 LINE L2 -2917 397 224 703 250 0 0 chr21 11745694 11745850 -33161720 - MER6B DNA MER2_type -54 156 1 1635 95 110 26 chr21 11746247 11746520 -33161050 + L1PA13 LINE L1 5861 6156 -7 1484 164 3 85 chr21 11746535 11746864 -33160706 + AluJb SINE Alu 1 302 -10 370 140 29 89 chr21 11747072 11747201 -33160369 + MLT1D LTR MaLR 89 208 -297 1286 242 21 3 chr21 11747207 11747496 -33160074 + AluJo SINE Alu 5 298 -14 1148 192 131 27 chr21 11747746 11748006 -33159564 + AluJo SINE Alu 1 287 -15 243 0 0 0 chr21 11748009 11748036 -33159534 + (GA)n Simple_repeat Simple_repeat 2 28 0 690 229 7 0 chr21 11748037 11748177 -33159393 - AluJo SINE Alu -148 164 24 295 223 9 125 chr21 11748239 11748270 -33159300 + L1MB8 LINE L1 5476 5509 -653 1504 194 7 14 chr21 11748270 11748564 -33159006 + AluJb SINE Alu 1 292 -20 295 223 9 125 chr21 11748564 11748644 -33158926 + L1MB8 LINE L1 5509 5574 -588 687 202 0 31 chr21 11748670 11748799 -33158771 - FLAM_A SINE Alu -8 125 1 2490 214 22 26 chr21 11748799 11749420 -33158150 + L1MB8 LINE L1 5555 6173 -5 1586 172 3 35 chr21 11749441 11749731 -33157839 + AluJo SINE Alu 1 281 -31 1207 122 0 6 chr21 11749749 11749913 -33157657 + AluSq SINE Alu 1 163 -150 1498 133 0 5 chr21 11749926 11750144 -33157426 + AluSg/x SINE Alu 79 295 -17 253 255 11 11 chr21 11750167 11750261 -33157309 - LTR37A LTR ERV1 -93 333 240 1367 210 3 21 chr21 11750426 11750717 -33156853 - AluJo SINE Alu -26 286 1 652 210 0 8 chr21 11750748 11750872 -33156698 - FLAM_C SINE Alu -20 123 1 1380 257 82 18 chr21 11750972 11751578 -33155992 + L2 LINE L2 2458 3097 -216 1748 186 44 0 chr21 11751582 11751878 -33155692 - AluJo SINE Alu -3 309 1 1398 184 19 61 chr21 11751879 11752238 -33155332 - MLT1D LTR MaLR 0 505 162 700 193 0 0 chr21 11752238 11752357 -33155213 + AluJo SINE Alu 2 120 -192 1581 212 10 7 chr21 11752381 11752688 -33154882 + AluJo SINE Alu 1 308 -4 299 246 14 0 chr21 11752693 11752762 -33154808 + MER21B LTR ERV1 21 90 -773 663 160 53 124 chr21 11752856 11753081 -33154489 + MER58 DNA MER1_type 2189 2397 -23 240 260 117 26 chr21 11753096 11753173 -33154397 + L3 LINE CR1 1186 1269 -308 872 230 0 31 chr21 11753250 11753446 -33154124 + AluJo SINE Alu 108 297 -15 227 288 0 0 chr21 11753447 11753513 -33154057 + L1MB4 LINE L1 5200 5265 -881 2177 105 7 0 chr21 11753543 11753837 -33153733 + AluSc SINE Alu 1 296 -13 1906 193 23 48 chr21 11753837 11754685 -33152885 + L1MB4 LINE L1 5332 6123 -57 199 227 0 0 chr21 11754811 11754855 -33152715 - MIR SINE MIR -152 110 67 250 204 0 0 chr21 11755553 11755602 -33151968 - MIR SINE MIR -56 206 158 2590 52 26 0 chr21 11755618 11755963 -33151607 - L1PA7 LINE L1 -30 6124 5771 1373 183 183 3 chr21 11756156 11756505 -33151065 - LOR1b LTR ERV1 0 461 50 1657 116 46 0 chr21 11756966 11757116 -33150454 - AluSq SINE Alu -23 290 123 250 24 71 0 chr21 11757116 11757158 -33150412 + T-rich Low_complexity Low_complexity 2 46 0 1657 116 46 0 chr21 11757158 11757248 -33150322 - AluSq SINE Alu -190 123 39 554 200 0 0 chr21 11757248 11757343 -33150227 - FLAM_A SINE Alu -27 115 21 239 261 0 15 chr21 11757381 11757446 -33150124 + L1ME1 LINE L1 3492 3555 -2591 1806 229 77 57 chr21 11757651 11758394 -33149176 + L1ME1 LINE L1 5408 6165 -1 22 0 0 0 chr21 11758671 11758693 -33148877 + AT_rich Low_complexity Low_complexity 1 22 0 1918 134 7 7 chr21 11759400 11759710 -33147860 + AluSx SINE Alu 1 312 0 805 167 108 25 chr21 11759740 11759944 -33147626 + L1MA4A LINE L1 6059 6279 -24 1615 143 53 0 chr21 11760821 11761066 -33146504 + AluSx SINE Alu 41 298 -14 279 104 0 0 chr21 11761493 11761541 -33146029 + (CAAA)n Simple_repeat Simple_repeat 2 49 0 445 273 16 0 chr21 11761655 11761783 -33145787 + L1MC4 LINE L1 7770 7899 -143 282 343 30 6 chr21 11762047 11762216 -33145354 - L1MC/D LINE L1 -2186 5622 5450 594 231 8 0 chr21 11762322 11762439 -33145131 - FLAM_C SINE Alu -25 118 1 1652 211 3 0 chr21 11763079 11763373 -33144197 - AluJo SINE Alu -17 295 1 447 221 0 0 chr21 11763640 11763717 -33143853 + AluJ/FLAM SINE Alu 3 79 -233 1429 254 47 4 chr21 11763718 11764203 -33143367 + L1M4 LINE L1 4855 5360 -786 1645 199 55 128 chr21 11764213 11764274 -33143296 + L1MB7 LINE L1 5045 5109 -1075 2211 117 7 0 chr21 11764274 11764574 -33142996 + AluY SINE Alu 1 302 -9 1645 199 55 128 chr21 11764574 11764944 -33142626 + L1MB7 LINE L1 5109 5505 -679 1628 164 3 50 chr21 11764944 11765242 -33142328 + AluJb SINE Alu 22 305 -7 1645 199 55 128 chr21 11765242 11765767 -33141803 + L1MB7 LINE L1 5505 5926 -258 412 207 27 120 chr21 11765784 11765934 -33141636 + L1MB7 LINE L1 6040 6175 -9 1515 211 24 14 chr21 11767795 11768084 -33139486 + AluJo SINE Alu 1 292 -20 844 205 141 25 chr21 11768204 11768487 -33139083 + MER33 DNA MER1_type 8 323 -1 468 214 54 9 chr21 11769152 11769264 -33138306 - Tigger1 DNA MER2_type 0 2418 2302 * 10611 147 27 24 chr21 11769262 11769561 -33138009 - Tigger1 DNA MER2_type -374 2044 1748 2226 110 13 0 chr21 11769561 11769860 -33137710 - AluSp SINE Alu -10 303 1 10611 147 27 24 chr21 11769860 11770139 -33137431 - Tigger1 DNA MER2_type -670 1748 1471 2164 123 0 0 chr21 11770139 11770432 -33137138 - AluSc SINE Alu -16 293 1 10611 147 27 24 chr21 11770432 11770466 -33137104 - Tigger1 DNA MER2_type -947 1471 1439 1281 207 24 30 chr21 11770466 11770761 -33136809 + AluJb SINE Alu 1 293 -19 10611 147 27 24 chr21 11770761 11772158 -33135412 - Tigger1 DNA MER2_type -979 1439 26 1921 155 3 17 chr21 11772738 11773034 -33134536 + AluSx SINE Alu 1 292 -20 1833 131 13 34 chr21 11773378 11773504 -33134066 + AluSg SINE Alu 3 130 -180 264 59 0 0 chr21 11773504 11773538 -33134032 + (TAA)n Simple_repeat Simple_repeat 3 36 0 1833 131 13 34 chr21 11773538 11773709 -33133861 + AluSg SINE Alu 130 294 -16 238 235 104 26 chr21 11774198 11774372 -33133198 - L1ME LINE L1 -285 5836 5645 27 29 0 0 chr21 11774679 11774713 -33132857 + AT_rich Low_complexity Low_complexity 1 34 0 26 0 0 0 chr21 11775562 11775588 -33131982 + AT_rich Low_complexity Low_complexity 1 26 0 673 210 45 13 chr21 11775793 11775950 -33131620 + AluJb SINE Alu 137 298 -14 758 200 0 0 chr21 11776082 11776207 -33131363 + FLAM_C SINE Alu 1 125 -8 1113 219 17 9 chr21 11776223 11776456 -33131114 + AluJo SINE Alu 1 235 -77 2451 70 0 7 chr21 11776505 11776804 -33130766 - AluY SINE Alu -14 297 1 1789 174 23 0 chr21 11776974 11777273 -33130297 + AluSx SINE Alu 1 306 -6 1653 207 6 6 chr21 11778417 11778769 -33128801 + L1MB3 LINE L1 5480 5831 -352 752 171 0 0 chr21 11778769 11778886 -33128684 + FLAM_C SINE Alu 1 117 -16 274 178 0 6 chr21 11778929 11778995 -33128575 + L1PB4 LINE L1 6091 6143 -13 9922 248 41 49 chr21 11779010 11782515 -33125055 + L1P4 LINE L1 116 3648 -3955 1964 149 24 0 chr21 11782515 11782811 -33124759 - AluSx SINE Alu -7 305 3 9922 248 41 49 chr21 11782811 11783423 -33124147 + L1P4 LINE L1 3648 4264 -3339 2097 135 0 3 chr21 11783423 11783720 -33123850 + AluSq SINE Alu 1 296 -17 9922 248 41 49 chr21 11783720 11784967 -33122603 + L1P4 LINE L1 4264 5520 -2083 7607 22 0 2 chr21 11784967 11786106 -33121464 + L1PA3 LINE L1 5043 6155 0 9922 248 41 49 chr21 11786106 11786179 -33121391 + L1P4 LINE L1 5520 5592 -2011 2169 117 10 0 chr21 11786179 11786486 -33121084 + AluSq SINE Alu 4 313 0 9922 248 41 49 chr21 11786486 11787289 -33120281 + L1P4 LINE L1 5592 7159 -444 290 211 27 19 chr21 11787333 11787434 -33120136 + L1MA6 LINE L1 5705 5802 -498 2340 165 47 2 chr21 11787532 11788022 -33119548 + L1MA6 LINE L1 5789 6300 0 1898 138 0 64 chr21 11788027 11788236 -33119334 + AluSx SINE Alu 1 183 -129 7658 26 0 0 chr21 11788236 11789938 -33117632 + L1PA3 LINE L1 4471 6155 0 1898 138 0 64 chr21 11789938 11790055 -33117515 + AluSx SINE Alu 183 306 -6 1468 247 32 9 chr21 11790055 11790506 -33117064 + L1MCa LINE L1 139 599 -5827 442 244 16 16 chr21 11790571 11790694 -33116876 + L1MCa LINE L1 573 695 -5731 2268 100 0 0 chr21 11791434 11791734 -33115836 + AluY SINE Alu 1 300 -11 183 80 0 0 chr21 11792097 11792122 -33115448 + (T)n Simple_repeat Simple_repeat 1 25 0 1942 118 52 0 chr21 11792919 11793208 -33114362 - AluSg SINE Alu -6 304 1 2042 186 72 20 chr21 11793481 11793954 -33113616 - L1MA9 LINE L1 -20 6292 5790 285 29 0 0 chr21 11793954 11793988 -33113582 + (CA)n Simple_repeat Simple_repeat 1 34 0 2042 186 72 20 chr21 11793988 11794015 -33113555 - L1MA9 LINE L1 -522 5790 5766 713 261 68 0 chr21 11794037 11794198 -33113372 - AluJo SINE Alu -54 258 87 1915 127 7 0 chr21 11794198 11794473 -33113097 - AluSg SINE Alu -33 277 1 2842 224 43 55 chr21 11794474 11795603 -33111967 - L1MA9 LINE L1 -443 5722 4581 2237 121 0 0 chr21 11795603 11795910 -33111660 - AluSc SINE Alu -2 307 1 2842 224 43 55 chr21 11795910 11796054 -33111516 - L1MA9 LINE L1 -1584 4581 4437 263 128 0 0 chr21 11796054 11796093 -33111477 + MADE1 DNA Mariner 1 39 -41 2842 224 43 55 chr21 11796093 11796260 -33111310 - L1MA9 LINE L1 -1728 4437 4251 357 43 0 0 chr21 11796644 11796691 -33110879 + (TG)n Simple_repeat Simple_repeat 2 48 0 30 0 0 0 chr21 11797157 11797187 -33110383 + AT_rich Low_complexity Low_complexity 1 30 0 1402 283 65 18 chr21 11797222 11797981 -33109589 + L1M4 LINE L1 3497 4290 -1856 1795 116 4 32 chr21 11798043 11798320 -33109250 + AluSx SINE Alu 37 305 -7 1418 148 124 16 chr21 11798530 11798825 -33108745 - AluSx SINE Alu 0 323 1 1018 133 128 24 chr21 11798825 11799036 -33108534 + MER6 DNA MER2_type 633 865 0 2259 104 0 7 chr21 11799581 11799879 -33107691 - AluSc SINE Alu -13 296 1 1969 143 14 0 chr21 11800150 11800450 -33107120 + AluSx SINE Alu 1 304 0 32 26 0 0 chr21 11800724 11800763 -33106807 + AT_rich Low_complexity Low_complexity 1 39 0 480 138 11 0 chr21 11800769 11800863 -33106707 + L1PB1 LINE L1 6056 6150 -1 182 91 30 0 chr21 11800881 11800914 -33106656 + A-rich Low_complexity Low_complexity 3 36 0 1625 197 3 10 chr21 11801134 11801433 -33106137 + AluJb SINE Alu 1 297 -15 420 206 0 0 chr21 11801434 11801507 -33106063 + L1MB8 LINE L1 5499 5571 -613 614 208 0 54 chr21 11801510 11801659 -33105911 - FLAM_A SINE Alu -1 141 1 2228 213 38 58 chr21 11801659 11802227 -33105343 + L1MB8 LINE L1 5555 6110 -68 1502 222 0 0 chr21 11802227 11802533 -33105037 - AluJb SINE Alu -6 306 1 2228 213 38 58 chr21 11802533 11802598 -33104972 + L1MB8 LINE L1 6110 6175 -3 2184 126 3 3 chr21 11802600 11802909 -33104661 + AluSx SINE Alu 1 309 -3 1652 176 0 23 chr21 11802924 11803226 -33104344 + AluJo SINE Alu 11 305 -7 1062 191 0 22 chr21 11803481 11803659 -33103911 - AluJb SINE Alu -137 175 2 953 235 113 34 chr21 11803662 11803730 -33103840 + MER21B LTR ERV1 426 487 -376 1605 187 3 23 chr21 11803730 11804030 -33103540 + AluJo SINE Alu 6 299 -13 953 235 113 34 chr21 11804030 11804314 -33103256 + MER21B LTR ERV1 487 806 -57 2065 130 0 10 chr21 11804595 11804896 -33102674 + AluSg SINE Alu 1 298 -12 1579 207 35 3 chr21 11805472 11805810 -33101760 + L1MB4 LINE L1 5480 5828 -355 691 215 0 0 chr21 11805812 11805933 -33101637 + FLAM_C SINE Alu 1 121 -22 522 0 0 0 chr21 11805933 11805991 -33101579 + (TA)n Simple_repeat Simple_repeat 2 59 0 621 140 53 0 chr21 11806003 11806117 -33101453 + L1MB4 LINE L1 5820 5939 -241 2328 87 0 3 chr21 11806118 11806417 -33101153 + AluY SINE Alu 1 298 -13 2071 143 0 0 chr21 11806452 11806752 -33100818 + AluSc SINE Alu 1 300 -9 182 203 0 47 chr21 11807720 11807784 -33099786 + GA-rich Low_complexity Low_complexity 2 62 0 324 64 0 0 chr21 11807843 11807890 -33099680 + (CA)n Simple_repeat Simple_repeat 2 48 0 242 143 20 0 chr21 11808051 11808100 -33099470 + CT-rich Low_complexity Low_complexity 2 51 0 225 284 99 62 chr21 11808213 11808291 -33099279 + MIR SINE MIR 29 103 -159 2393 172 24 0 chr21 11808291 11808709 -33098861 - MSTA LTR MaLR 0 428 1 225 284 99 62 chr21 11808709 11808792 -33098778 + MIR SINE MIR 103 196 -66 599 375 25 12 chr21 11809329 11809654 -33097916 - LTR16A LTR ERVL -12 438 110 21 36 0 0 chr21 11809765 11809793 -33097777 + AT_rich Low_complexity Low_complexity 1 28 0 23 54 0 0 chr21 11810151 11810188 -33097382 + AT_rich Low_complexity Low_complexity 1 37 0 24 67 0 0 chr21 11811547 11811592 -33095978 + AT_rich Low_complexity Low_complexity 1 45 0 25 65 0 0 chr21 11811780 11811826 -33095744 + AT_rich Low_complexity Low_complexity 1 46 0 201 321 161 0 chr21 11813350 11813431 -33094139 + MIR SINE MIR 118 211 -51 552 250 222 0 chr21 11813923 11814103 -33093467 - MER58A DNA MER1_type -4 220 1 3671 117 11 9 chr21 11814440 11815003 -33092567 + LTR6A LTR ERV1 1 564 0 22 0 0 0 chr21 11816145 11816167 -33091403 + AT_rich Low_complexity Low_complexity 1 22 0 2200 91 30 0 chr21 11816886 11817183 -33090387 + AluY SINE Alu 1 306 -5 2044 131 7 3 chr21 11817491 11817796 -33089774 + AluSx SINE Alu 1 306 -6 2310 110 0 0 chr21 11818089 11818398 -33089172 - AluSg1 SINE Alu 0 309 1 362 217 75 0 chr21 11818867 11818987 -33088583 - L1MC4 LINE L1 0 8042 7914 448 294 53 4 chr21 11819039 11819301 -33088269 + L1M4 LINE L1 2890 3164 -2982 302 288 88 28 chr21 11819428 11819748 -33087822 - L1M4 LINE L1 -3267 2879 2541 * 5403 168 32 17 chr21 11819747 11820068 -33087502 - L1PB2 LINE L1 -4 6147 5832 267 31 0 0 chr21 11820068 11820100 -33087470 + (TTTTC)n Simple_repeat Simple_repeat 2 33 0 2045 138 0 0 chr21 11820103 11820386 -33087184 - AluSq SINE Alu -30 283 1 5403 168 32 17 chr21 11820386 11821752 -33085818 - L1PB2 LINE L1 -320 5831 4430 586 173 40 6 chr21 11821776 11821949 -33085621 + (TA)n Simple_repeat Simple_repeat 2 180 0 * 604 138 63 6 chr21 11821928 11822264 -33085306 + (TATATG)n Simple_repeat Simple_repeat 1 355 0 738 178 29 0 chr21 11822319 11822600 -33084970 + (TA)n Simple_repeat Simple_repeat 1 289 0 594 173 29 6 chr21 11822613 11822786 -33084784 + (TATATG)n Simple_repeat Simple_repeat 3 179 0 2410 207 56 5 chr21 11822786 11823362 -33084208 - L1PB2 LINE L1 -1747 4399 3795 505 290 39 0 chr21 11823358 11823565 -33084005 - L1M4 LINE L1 -3597 2549 2335 * 464 291 17 23 chr21 11823609 11823781 -33083789 + L1MEc LINE L1 56 226 -6170 2910 179 5 4 chr21 11823917 11824469 -33083101 - L1PA12 LINE L1 -1131 5015 4463 5886 113 17 2 chr21 11824471 11825609 -33081961 + L1PA12 LINE L1 5026 6168 0 247 326 0 23 chr21 11825697 11825783 -33081787 - L2 LINE L2 -1 3271 3188 276 77 0 0 chr21 11825814 11825853 -33081717 + (TA)n Simple_repeat Simple_repeat 1 39 0 3565 193 59 90 chr21 11825908 11827511 -33080059 + L1M1 LINE L1 3142 4700 -2865 1620 157 15 7 chr21 11827522 11827796 -33079774 + AluSx SINE Alu 1 276 -36 744 190 36 26 chr21 11827796 11827981 -33079589 - MER41-int LTR ERV1 -6092 2028 1839 * 1415 188 22 4 chr21 11827980 11828251 -33079319 - MER41-int LTR ERV1 -3592 2354 2079 300 283 43 29 chr21 11828862 11829000 -33078570 + L1M1 LINE L1 4620 4759 -2806 387 250 0 24 chr21 11829487 11829611 -33077959 + GA-rich Low_complexity Low_complexity 3 123 0 471 235 77 81 chr21 11830749 11831212 -33076358 - HSREP522 Satellite telomeric -103 461 1 4648 198 38 62 chr21 11833135 11833856 -33073714 - L1 LINE L1 -814 6751 6076 2128 124 0 0 chr21 11833856 11834154 -33073416 - AluSg SINE Alu -12 298 1 4648 198 38 62 chr21 11834154 11834811 -33072759 - L1 LINE L1 -1489 6076 5405 1928 282 70 75 chr21 11834794 11835017 -33072553 - L1 LINE L1 -5176 2389 2166 * 2112 143 0 0 chr21 11835017 11835317 -33072253 - AluSx SINE Alu -10 302 3 1928 282 70 75 chr21 11835317 11836758 -33070812 - L1 LINE L1 -5399 2166 17 * 2692 280 60 12 chr21 11836756 11838033 -33069537 - L1M4 LINE L1 -1635 4568 3231 1985 142 3 0 chr21 11838080 11838383 -33069187 - AluSx SINE Alu -8 304 1 1531 211 3 10 chr21 11839560 11839863 -33067707 + AluSx SINE Alu 1 301 -11 21 0 0 0 chr21 11840100 11840121 -33067449 + AT_rich Low_complexity Low_complexity 1 21 0 29 60 0 0 chr21 11845804 11845854 -33061716 + AT_rich Low_complexity Low_complexity 1 50 0 30 45 0 0 chr21 11847326 11847370 -33060200 + AT_rich Low_complexity Low_complexity 1 44 0 748 176 24 6 chr21 11847560 11847730 -33059840 + L1MB2 LINE L1 5998 6170 -1 1989 138 0 0 chr21 11847834 11848116 -33059454 + AluSx SINE Alu 3 284 -28 231 88 0 0 chr21 11848116 11848150 -33059420 + (CATA)n Simple_repeat Simple_repeat 2 35 0 455 136 0 0 chr21 11848468 11848534 -33059036 + AluS SINE Alu 1 66 -246 5309 228 19 13 chr21 11848535 11849994 -33057576 - L1PBb LINE L1 -3870 2333 777 2148 234 54 6 chr21 11851331 11852012 -33055558 - L1M4 LINE L1 -3119 3027 2314 483 262 67 20 chr21 11852029 11852178 -33055392 + MER31B LTR ERV1 85 240 -226 3601 113 6 2 chr21 11852178 11852681 -33054889 + MER41A-int LTR ERV1 5439 5943 -3 3816 105 20 2 chr21 11852681 11853223 -33054347 + MER41A LTR ERV1 1 552 -2 364 252 54 23 chr21 11853227 11853424 -33054146 + L1ME2 LINE L1 5843 6040 -126 923 230 14 19 chr21 11853535 11853748 -33053822 + MER58C DNA MER1_type 4 215 0 2739 149 50 28 chr21 11853839 11854374 -33053196 - LTR10A LTR ERV1 -62 547 1 12739 207 36 59 chr21 11854421 11857443 -33050127 - LTR10A-int LTR ERV1 -1 6648 3695 2316 60 6 0 chr21 11857419 11857734 -33049836 - LTR10A-int LTR ERV1 -4319 2577 2261 * 235 331 123 6 chr21 11858003 11858166 -33049404 + MIR SINE MIR 44 225 -37 919 242 85 7 chr21 11860974 11861267 -33046303 + L1ME3A LINE L1 5854 6169 -1 1559 172 52 43 chr21 11862108 11862434 -33045136 - MER44D DNA MER2_type -6 603 5 240 261 46 0 chr21 11863050 11863115 -33044455 - L2 LINE L2 -1 3271 3204 23 0 0 0 chr21 11864605 11864628 -33042942 + AT_rich Low_complexity Low_complexity 1 23 0 618 144 0 76 chr21 11864831 11864963 -33042607 + L1PB3 LINE L1 6033 6154 0 25 0 0 0 chr21 11864963 11864988 -33042582 + AT_rich Low_complexity Low_complexity 1 25 0 186 370 20 20 chr21 11864999 11865099 -33042471 + MIR SINE MIR 33 132 -76 24 32 0 0 chr21 11865186 11865217 -33042353 + AT_rich Low_complexity Low_complexity 1 31 0 202 91 45 23 chr21 11865367 11865411 -33042159 + (TCTCTG)n Simple_repeat Simple_repeat 1 45 0 1526 208 31 29 chr21 11866154 11866567 -33041003 - L1MC3 LINE L1 -1722 6063 5650 821 287 38 16 chr21 11866593 11866989 -33040581 - L1MEc LINE L1 -3655 2885 2482 460 276 137 18 chr21 11867033 11867770 -33039800 - L1MEc LINE L1 -4582 1958 1153 21 0 0 0 chr21 11867889 11867910 -33039660 + AT_rich Low_complexity Low_complexity 1 21 0 2180 103 3 3 chr21 11868012 11868428 -33039142 - AluSp SINE Alu 0 416 1 231 36 0 0 chr21 11868627 11868655 -33038915 + (TTG)n Simple_repeat Simple_repeat 3 30 0 395 347 45 35 chr21 11868669 11868957 -33038613 - L1MEc LINE L1 -6069 652 362 2707 29 3 0 chr21 11868970 11869279 -33038291 - AluY SINE Alu -1 310 1 3499 212 44 23 chr21 11869338 11870431 -33037139 - L1MB7 LINE L1 -26 6656 5540 2445 232 65 33 chr21 11870418 11871009 -33036561 - L1MB7 LINE L1 -3174 3470 2899 * 2195 19 16 0 chr21 11871009 11871267 -33036303 + L1PA4 LINE L1 5878 6139 -16 270 0 0 0 chr21 11871267 11871297 -33036273 + (TA)n Simple_repeat Simple_repeat 1 30 0 2445 232 65 33 chr21 11871297 11871846 -33035724 - L1MB7 LINE L1 -3744 2900 2281 445 211 84 36 chr21 11871878 11872044 -33035526 - L1MB7 LINE L1 -4489 2157 1984 541 247 25 12 chr21 11872058 11872220 -33035350 - L1MB7 LINE L1 -6377 165 2 2607 159 16 52 chr21 11872256 11872808 -33034762 + L1PA16 LINE L1 5635 6166 0 302 289 44 88 chr21 11873142 11873460 -33034110 - L1M4 LINE L1 -2230 3916 3613 227 247 141 0 chr21 11873716 11873801 -33033769 - L1ME LINE L1 -469 5652 5556 186 214 89 0 chr21 11874123 11874179 -33033391 - MIR SINE MIR -65 197 137 31 26 0 0 chr21 11874339 11874377 -33033193 + AT_rich Low_complexity Low_complexity 1 38 0 625 172 0 0 chr21 11874377 11874476 -33033094 - AluJb SINE Alu -30 282 184 23 0 0 0 chr21 11874828 11874851 -33032719 + AT_rich Low_complexity Low_complexity 1 23 0 192 352 109 8 chr21 11875662 11875790 -33031780 + L2 LINE L2 2357 2497 -817 1241 196 75 48 chr21 11875996 11876327 -33031243 - MER2 DNA MER2_type 0 345 6 357 309 61 68 chr21 11876600 11876878 -33030692 + L2 LINE L2 3038 3313 0 569 188 45 8 chr21 11876957 11877090 -33030480 - L1MD2 LINE L1 -425 5934 5797 644 180 8 39 chr21 11877244 11877372 -33030198 + MER63 DNA MER1_type 1 750 -86 244 313 75 25 chr21 11877561 11877721 -33029849 + MLT1H LTR MaLR 382 549 0 558 303 136 27 chr21 11878696 11879026 -33028544 + LTR33 LTR ERVL 33 398 -123 227 270 67 22 chr21 11879311 11879400 -33028170 + L2 LINE L2 2282 2374 -940 423 32 0 32 chr21 11879551 11879613 -33027957 + L1PA13 LINE L1 6102 6161 -2 8082 216 89 18 chr21 11879613 11882392 -33025178 - L1 LINE L1 -1813 5354 2306 2089 305 23 35 chr21 11882475 11883298 -33024272 - L1 LINE L1 -5952 1216 4 234 390 9 0 chr21 11883816 11883921 -33023649 + L2 LINE L2 3204 3309 -4 244 200 29 57 chr21 11883966 11884036 -33023534 - L1ME3A LINE L1 -5 6165 6098 1514 259 55 28 chr21 11884049 11884521 -33023049 - MLT1D LTR MaLR 0 505 21 1389 262 85 49 chr21 11884644 11885626 -33021944 - L1ME3A LINE L1 -183 5987 4967 2447 166 0 16 chr21 11885828 11886273 -33021297 - L1PA15 LINE L1 -5 6160 5723 587 191 25 38 chr21 11886401 11886558 -33021012 - L1ME3A LINE L1 -1453 4693 4539 2805 156 14 23 chr21 11886672 11887186 -33020384 - L1MA4 LINE L1 -159 6141 5633 1864 62 0 0 chr21 11887187 11887412 -33020158 - AluY SINE Alu -73 238 14 3720 164 24 47 chr21 11887413 11887868 -33019702 + L1MA5A LINE L1 5515 5945 -352 2018 111 11 4 chr21 11887868 11888167 -33019403 + AluSx SINE Alu 1 301 0 3720 164 24 47 chr21 11888167 11888511 -33019059 + L1MA5A LINE L1 5945 6296 -1 329 243 101 14 chr21 11888518 11888666 -33018904 - Charlie4a DNA MER1_type -102 406 246 6035 173 3 0 chr21 11888670 11889740 -33017830 + L1P LINE L1 3865 4937 -1209 235 331 48 24 chr21 11889762 11889886 -33017684 - L2 LINE L2 -724 2590 2464 416 340 45 20 chr21 11890915 11891115 -33016455 - MIR SINE MIR -1 261 57 227 333 13 0 chr21 11891180 11891255 -33016315 + L2 LINE L2 3229 3304 -9 7596 27 0 0 chr21 11891416 11892428 -33015142 - L1PA3 LINE L1 -3 6152 5141 17556 34 7 1 chr21 11892429 11894582 -33012988 + L1P LINE L1 2932 5098 -1048 307 250 65 65 chr21 11895211 11895335 -33012235 - MIR SINE MIR -122 140 17 23 0 0 0 chr21 11897889 11897912 -33009658 + AT_rich Low_complexity Low_complexity 1 23 0 22 80 0 0 chr21 11898519 11898569 -33009001 + AT_rich Low_complexity Low_complexity 1 50 0 1624 176 6 35 chr21 11898824 11899143 -33008427 + AluSx SINE Alu 1 310 -2 23 33 0 0 chr21 11899664 11899694 -33007876 + AT_rich Low_complexity Low_complexity 1 30 0 2081 97 3 52 chr21 11899823 11900131 -33007439 + AluSx SINE Alu 1 293 -19 2231 126 0 0 chr21 11900266 11900568 -33007002 + AluSg SINE Alu 1 302 -8 23 0 0 0 chr21 11901193 11901216 -33006354 + AT_rich Low_complexity Low_complexity 1 23 0 24 0 0 0 chr21 11901981 11902005 -33005565 + AT_rich Low_complexity Low_complexity 1 24 0 1435 183 121 0 chr21 11902465 11902771 -33004799 + MER2 DNA MER2_type 2 344 0 25 51 0 0 chr21 11902916 11902955 -33004615 + AT_rich Low_complexity Low_complexity 1 39 0 266 235 31 31 chr21 11902958 11903056 -33004514 + L1ME1 LINE L1 6010 6107 -59 57 79 0 0 chr21 11903216 11903343 -33004227 + AT_rich Low_complexity Low_complexity 1 127 0 1657 165 219 19 chr21 11903700 11904125 -33003445 - L1MA4A LINE L1 -23 6280 5771 2614 174 22 8 chr21 11904486 11905369 -33002201 - L1MA4A LINE L1 -556 5747 4853 274 175 23 5 chr21 11905505 11905576 -33001994 + MLT1D LTR MaLR 57 98 -407 12848 85 5 1 chr21 11905576 11908174 -32999396 + L1PA7 LINE L1 3542 6151 -3 274 175 23 5 chr21 11908174 11908185 -32999385 + MLT1D LTR MaLR 98 107 -398 * 831 211 57 14 chr21 11908180 11908389 -32999181 + MER96B DNA MER1_type? 177 394 -23 23 0 0 0 chr21 11908629 11908652 -32998918 + AT_rich Low_complexity Low_complexity 1 23 0 35 0 0 0 chr21 11908669 11908704 -32998866 + AT_rich Low_complexity Low_complexity 1 35 0 206 309 11 21 chr21 11908840 11908934 -32998636 + A-rich Low_complexity Low_complexity 2 94 0 3050 130 11 6 chr21 11909025 11909495 -32998075 + MER84 LTR ERVI 36 507 0 1035 99 0 19 chr21 11910009 11910170 -32997400 + L1P4 LINE L1 5333 5490 -671 2337 57 3 41 chr21 11910170 11910485 -32997085 + AluY SINE Alu 1 303 -8 794 276 90 33 chr21 11910650 11911049 -32996521 - L1M4 LINE L1 -1822 4324 3903 927 111 90 0 chr21 11911049 11911074 -32996496 - AluY SINE Alu -154 157 136 482 0 0 17 chr21 11911074 11911133 -32996437 + (TTTTA)n Simple_repeat Simple_repeat 2 59 0 927 111 90 0 chr21 11911133 11911251 -32996319 - AluY SINE Alu -175 136 1 381 22 0 0 chr21 11912419 11912465 -32995105 + (CA)n Simple_repeat Simple_repeat 1 46 0 180 77 0 0 chr21 11912620 11912646 -32994924 + (A)n Simple_repeat Simple_repeat 1 26 0 2199 128 0 10 chr21 11912648 11912961 -32994609 + AluSx SINE Alu 1 310 -2 376 92 231 0 chr21 11915062 11915127 -32992443 + MADE1 DNA Mariner 1 80 0 597 266 59 25 chr21 11916532 11916735 -32990835 - MIR SINE MIR 0 262 53 820 221 23 9 chr21 11916860 11917077 -32990493 + L1MC3 LINE L1 7566 7785 0 2233 105 3 0 chr21 11917087 11917382 -32990188 + AluY SINE Alu 1 296 -15 1953 69 0 8 chr21 11917918 11918178 -32989392 + AluY SINE Alu 54 311 0 266 0 29 0 chr21 11918455 11918489 -32989081 + (CA)n Simple_repeat Simple_repeat 2 36 0 228 179 0 0 chr21 11918878 11918917 -32988653 - MER58A DNA MER1_type 0 224 186 2537 61 0 3 chr21 11918999 11919311 -32988259 + AluY SINE Alu 1 311 0 610 269 48 12 chr21 11919365 11919532 -32988038 - MER58A DNA MER1_type -45 179 7 256 207 98 37 chr21 11919953 11920035 -32987535 - MLT1H LTR MaLR 0 549 463 197 242 109 70 chr21 11920491 11920619 -32986951 + MIR SINE MIR 120 252 -10 3221 277 37 31 chr21 11921126 11921551 -32986019 + L1M4 LINE L1 2252 2673 -3473 2005 110 32 36 chr21 11921551 11921678 -32985892 + AluSx SINE Alu 1 127 -185 2381 88 13 0 chr21 11921678 11921984 -32985586 + AluSp SINE Alu 1 310 -3 2005 110 32 36 chr21 11921984 11922165 -32985405 + AluSx SINE Alu 127 308 -4 3221 277 37 31 chr21 11922165 11922393 -32985177 + L1M4 LINE L1 2673 2898 -3248 2924 104 15 11 chr21 11922393 11922854 -32984716 - L1PA10 LINE L1 0 6168 5706 3221 277 37 31 chr21 11922854 11923760 -32983810 + L1M4 LINE L1 2898 3821 -2325 273 172 0 0 chr21 11923874 11923938 -32983632 + CT-rich Low_complexity Low_complexity 1 64 0 2066 73 51 0 chr21 11923938 11924212 -32983358 - AluY SINE Alu -23 288 1 227 190 50 30 chr21 11925054 11925154 -32982416 + (CACG)n Simple_repeat Simple_repeat 2 103 0 1834 160 3 3 chr21 11927102 11927395 -32980175 - AluSg1 SINE Alu -15 294 2 2030 118 7 4 chr21 11927569 11927883 -32979687 + AluSg SINE Alu 1 315 0 227 270 104 9 chr21 11928075 11928190 -32979380 + L1ME LINE L1 5689 5814 -307 2527 114 13 8 chr21 11929077 11929470 -32978100 + L1PA12 LINE L1 5774 6168 0 537 266 0 27 chr21 11929792 11929976 -32977594 - MER104 DNA MER2_type -1 179 1 597 284 93 40 chr21 11930078 11930326 -32977244 - MIR SINE MIR -1 261 4 297 0 0 0 chr21 11931518 11931551 -32976019 + (TG)n Simple_repeat Simple_repeat 2 34 0 244 374 36 36 chr21 11932051 11932190 -32975380 - MER5B DNA MER1_type 0 178 40 741 169 0 0 chr21 11932195 11932313 -32975257 + FLAM_A SINE Alu 1 118 -15 804 205 189 35 chr21 11932487 11932746 -32974824 - AluSg SINE Alu -1 299 1 201 246 123 18 chr21 11933366 11933423 -32974147 - L2 LINE L2 -50 3222 3160 24 32 0 0 chr21 11933893 11933924 -32973646 + AT_rich Low_complexity Low_complexity 1 31 0 2648 16 0 0 chr21 11934506 11934811 -32972759 + L1PA2 LINE L1 5850 6154 -1 337 313 103 15 chr21 11934869 11935064 -32972506 + MIR SINE MIR 20 231 -31 575 189 9 9 chr21 11936956 11937062 -32970508 + U6 snRNA snRNA 1 106 -1 251 391 53 0 chr21 11937753 11937904 -32969666 - MIR SINE MIR -47 215 57 3022 175 8 8 chr21 11938286 11938813 -32968757 - MER1A DNA MER1_type 0 527 1 304 192 0 0 chr21 11939042 11939094 -32968476 - MER91B DNA MER1_type -60 130 79 24 32 0 0 chr21 11939571 11939602 -32967968 + AT_rich Low_complexity Low_complexity 1 31 0 669 289 185 15 chr21 11940075 11940470 -32967100 - MLT1L LTR MaLR -153 462 1 188 324 28 0 chr21 11940476 11940547 -32967023 - L2 LINE L2 -565 2749 2677 931 224 47 47 chr21 11940552 11940766 -32966804 - MER58A DNA MER1_type -3 221 8 188 244 37 49 chr21 11941097 11941179 -32966391 - L2 LINE L2 -787 2527 2447 2038 153 7 0 chr21 11942544 11942851 -32964719 + AluSc SINE Alu 1 309 0 1488 189 137 53 chr21 11942962 11943454 -32964116 - LTR61 LTR ERV1 0 595 1 23 33 0 0 chr21 11943838 11943868 -32963702 + AT_rich Low_complexity Low_complexity 1 30 0 29 60 0 0 chr21 11943948 11943998 -32963572 + AT_rich Low_complexity Low_complexity 1 50 0 54 49 0 0 chr21 11945041 11945123 -32962447 + AT_rich Low_complexity Low_complexity 1 82 0 180 355 9 45 chr21 11945535 11945645 -32961925 + MIR3 SINE MIR 90 195 -13 229 252 99 86 chr21 11946588 11946711 -32960859 + L1ME LINE L1 5387 5514 -607 2057 147 6 11 chr21 11946711 11947058 -32960512 - L1PA15 LINE L1 0 6165 5821 229 252 99 86 chr21 11947058 11947085 -32960485 + L1ME LINE L1 5514 5539 -582 355 200 0 0 chr21 11947669 11947734 -32959836 - MER58A DNA MER1_type 0 224 160 886 201 25 0 chr21 11947738 11947897 -32959673 - AluJb SINE Alu -18 294 132 482 198 11 0 chr21 11947917 11948008 -32959562 - MER58A DNA MER1_type -15 92 1 2606 279 136 17 chr21 11948609 11948981 -32958589 + L2 LINE L2 1777 2104 -1209 2167 133 0 0 chr21 11948981 11949282 -32958288 - AluSx SINE Alu -11 301 1 2606 279 136 17 chr21 11949282 11950041 -32957529 + L2 LINE L2 2104 3040 -273 414 278 143 54 chr21 11950322 11950581 -32956989 + L2 LINE L2 3031 3312 -1 22 0 0 0 chr21 11950715 11950737 -32956833 + AT_rich Low_complexity Low_complexity 1 22 0 1928 156 3 0 chr21 11950843 11951138 -32956432 - AluSx SINE Alu -16 296 1 23 0 0 0 chr21 11951143 11951166 -32956404 + AT_rich Low_complexity Low_complexity 1 23 0 1549 148 72 30 chr21 11952052 11952383 -32955187 + THE1C LTR MaLR 5 349 -26 3453 216 40 10 chr21 11952395 11953016 -32954554 - L1PA15 LINE L1 -378 5776 5175 207 0 0 0 chr21 11953016 11953039 -32954531 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 3453 216 40 10 chr21 11953039 11953987 -32953583 - L1PA15 LINE L1 -979 5175 4125 3067 143 24 10 chr21 11954227 11954731 -32952839 + MER1A DNA MER1_type 1 511 -18 204 125 0 0 chr21 11955121 11955153 -32952417 + (TG)n Simple_repeat Simple_repeat 2 33 0 180 0 0 0 chr21 11955161 11955181 -32952389 + (CA)n Simple_repeat Simple_repeat 2 21 0 327 25 0 0 chr21 11955903 11955943 -32951627 + (TG)n Simple_repeat Simple_repeat 2 41 0 879 178 0 0 chr21 11955948 11956094 -32951476 - AluSg/x SINE Alu -31 279 134 7754 184 6 1 chr21 11957284 11958645 -32948925 + L1PA12 LINE L1 637 2004 -5577 256 221 0 44 chr21 11958670 11958738 -32948832 + L1PA13 LINE L1 403 467 -6320 325 267 0 0 chr21 11958746 11958821 -32948749 - L1PA13 LINE L1 -6244 1330 1256 460 143 0 0 chr21 11958830 11958900 -32948670 - L1PA13 LINE L1 -6251 1330 1261 1300 296 191 8 chr21 11958920 11959527 -32948043 + L1PA13 LINE L1 482 1199 -5588 2868 205 0 15 chr21 11959587 11960186 -32947384 + L1PA13 LINE L1 1395 1984 -4803 628 205 0 0 chr21 11960229 11960351 -32947219 - L1PA13 LINE L1 -6177 610 489 * 4184 177 23 8 chr21 11960343 11961358 -32946212 + L1PA13 LINE L1 1994 3039 -3758 2473 87 0 0 chr21 11961358 11961668 -32945902 + AluY SINE Alu 1 310 -1 4184 177 23 8 chr21 11961668 11961683 -32945887 + L1PA13 LINE L1 3039 3052 -3745 2003 192 135 55 chr21 11961684 11962632 -32944938 + MER4-int LTR ERV1 29 1097 -5501 6071 90 6 0 chr21 11962640 11963711 -32943859 - L1PA7 LINE L1 -3 6151 5051 3157 113 8 4 chr21 11963737 11964250 -32943320 + L1P LINE L1 4555 5069 -1077 2452 142 2 2 chr21 11968101 11968538 -32939032 - L1P LINE L1 -3745 2401 1965 1334 219 13 36 chr21 11968708 11969010 -32938560 - AluJo SINE Alu -16 296 2 1286 201 12 5 chr21 11970014 11970483 -32937087 + L1P4 LINE L1 5027 5496 -670 28 0 0 0 chr21 11970483 11970511 -32937059 + AT_rich Low_complexity Low_complexity 1 28 0 2110 114 0 16 chr21 11970621 11970927 -32936643 + AluSg SINE Alu 1 301 -9 587 282 123 33 chr21 11971005 11971764 -32935806 - L1MEc LINE L1 -4326 2796 1970 874 251 101 60 chr21 11972017 11972554 -32935016 - L1MEc LINE L1 -4890 1533 975 228 67 0 0 chr21 11972573 11972603 -32934967 + (TG)n Simple_repeat Simple_repeat 1 30 0 183 229 86 57 chr21 11973945 11974015 -32933555 - L2 LINE L2 -1273 2041 1970 296 299 195 6 chr21 11974050 11974224 -32933346 - MIR SINE MIR 0 262 56 818 37 0 9 chr21 11974418 11974525 -32933045 + (TTCC)n Simple_repeat Simple_repeat 3 108 0 1458 176 3 84 chr21 11974528 11974851 -32932719 - AluJb SINE Alu -15 297 1 550 169 73 32 chr21 11975371 11975495 -32932075 - MLT1A1 LTR MaLR -216 149 21 2307 65 58 0 chr21 11975741 11976035 -32931535 - AluSp SINE Alu -2 311 1 2223 110 7 0 chr21 11976273 11976563 -32931007 - AluSq SINE Alu -21 292 1 422 286 17 55 chr21 11976694 11976910 -32930660 - MIR3 SINE MIR -53 209 1 2111 147 0 0 chr21 11977823 11978135 -32929435 - AluSx SINE Alu 0 312 1 801 103 0 0 chr21 11978490 11978597 -32928973 + AluSc SINE Alu 1 107 -202 1950 203 40 4 chr21 11978607 11979084 -32928486 - L1MB3 LINE L1 -44 6139 5646 647 232 173 53 chr21 11979684 11980153 -32927417 + L1M4 LINE L1 4411 4935 -1211 337 301 20 0 chr21 11980220 11980373 -32927197 + L1MA10 LINE L1 6169 6324 -10 442 267 93 28 chr21 11980612 11980859 -32926711 + LTR37B LTR ERV1 198 460 -8 314 271 150 23 chr21 11981374 11981507 -32926063 + L1M2 LINE L1 815 964 -5885 320 281 23 6 chr21 11982221 11982392 -32925178 + (CA)n Simple_repeat Simple_repeat 1 174 0 251 326 11 0 chr21 11982411 11982586 -32924984 + (CA)n Simple_repeat Simple_repeat 1 177 0 2201 71 0 3 chr21 11982815 11983109 -32924461 - AluY SINE Alu -18 293 1 3054 51 0 0 chr21 11984298 11984748 -32922822 + L1P2 LINE L1 4989 5438 -716 6266 143 29 12 chr21 11986237 11987807 -32919763 - L1MA1 LINE L1 -9 6293 4687 2061 142 3 0 chr21 11987957 11988253 -32919317 + AluSq SINE Alu 1 297 -16 1044 238 74 65 chr21 11988574 11989157 -32918413 - L1ME1 LINE L1 -19 6147 5560 298 0 0 0 chr21 11990335 11990374 -32917196 + HY3 scRNA scRNA 62 100 -1 27 0 0 0 chr21 11990374 11990401 -32917169 + AT_rich Low_complexity Low_complexity 1 27 0 1780 200 58 28 chr21 11990935 11991436 -32916134 - L1MA7 LINE L1 -7 6284 5769 2305 208 60 28 chr21 11991440 11992088 -32915482 - L1MB8 LINE L1 -2 6176 5508 * 4084 190 37 16 chr21 11992082 11993603 -32913967 - L1MA7 LINE L1 -510 5781 4229 21 0 0 0 chr21 11994912 11994933 -32912637 + AT_rich Low_complexity Low_complexity 1 21 0 246 156 0 0 chr21 11996059 11996104 -32911466 + A-rich Low_complexity Low_complexity 1 45 0 29 47 0 0 chr21 11996809 11996852 -32910718 + AT_rich Low_complexity Low_complexity 1 43 0 454 230 0 9 chr21 11996877 11996990 -32910580 - L1MA7 LINE L1 -1904 4242 4131 186 43 0 0 chr21 11998287 11998310 -32909260 + (TGGGGG)n Simple_repeat Simple_repeat 3 25 0 202 245 102 92 chr21 12000407 12000505 -32907065 + L3 LINE CR1 364 462 -1115 405 268 142 21 chr21 12000779 12000931 -32906639 - MIR SINE MIR -63 145 34 199 158 26 0 chr21 12000956 12000994 -32906576 + MIR SINE MIR 102 140 -122 201 196 0 0 chr21 12001864 12001910 -32905660 + (CA)n Simple_repeat Simple_repeat 2 47 0 249 354 35 81 chr21 12002697 12002957 -32904613 - L2 LINE L2 -29 3243 2996 456 255 49 33 chr21 12002975 12003159 -32904411 + MLT1L LTR MaLR 402 588 -27 363 217 287 0 chr21 12003270 12003385 -32904185 + MIR SINE MIR 18 165 -97 1324 224 4 4 chr21 12003786 12004063 -32903507 - AluJb SINE Alu -35 277 1 25 31 0 0 chr21 12004144 12004176 -32903394 + AT_rich Low_complexity Low_complexity 1 32 0 1832 152 121 21 chr21 12004764 12005153 -32902417 + MSTA LTR MaLR 1 428 0 1624 178 3 29 chr21 12005482 12005791 -32901779 + AluJb SINE Alu 6 306 -6 216 0 0 0 chr21 12006405 12006429 -32901141 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 1026 199 5 0 chr21 12006547 12006733 -32900837 - MER3 DNA MER1_type 0 209 23 22 0 0 0 chr21 12007507 12007529 -32900041 + AT_rich Low_complexity Low_complexity 1 22 0 466 282 87 46 chr21 12007648 12007874 -32899696 + L1ME4a LINE L1 5535 5779 -342 1577 185 3 3 chr21 12007874 12008161 -32899409 - AluSx SINE Alu -24 288 2 466 282 87 46 chr21 12008161 12008257 -32899313 + L1ME4a LINE L1 5779 5870 -251 263 324 27 47 chr21 12008351 12008499 -32899071 + MIR SINE MIR 117 261 -1 228 100 0 0 chr21 12008529 12008569 -32899001 + (CA)n Simple_repeat Simple_repeat 1 40 0 350 246 113 56 chr21 12008585 12008727 -32898843 + L1ME4a LINE L1 5969 6118 -3 1383 224 10 3 chr21 12008769 12009068 -32898502 + AluJo SINE Alu 1 301 -11 2303 132 103 139 chr21 12009152 12009742 -32897828 - LTR4 LTR ERV1 -2 594 26 243 152 0 0 chr21 12010870 12010916 -32896654 + (TGAA)n Simple_repeat Simple_repeat 1 46 0 673 237 150 5 chr21 12011011 12011218 -32896352 + MIR SINE MIR 20 256 -6 507 200 98 86 chr21 12011679 12011857 -32895713 + MLT1D LTR MaLR 6 193 -289 1149 196 0 48 chr21 12011859 12012130 -32895440 + AluJb SINE Alu 5 262 -50 1370 221 55 52 chr21 12016062 12016591 -32890979 + MER67C LTR ERV1 22 514 0 33 43 0 0 chr21 12016867 12016914 -32890656 + AT_rich Low_complexity Low_complexity 1 47 0 265 318 47 0 chr21 12017038 12017145 -32890425 - MIR SINE MIR -71 191 80 409 257 0 19 chr21 12017293 12017398 -32890172 + L1M3e LINE L1 466 568 -6921 538 342 39 19 chr21 12017463 12017720 -32889850 + L1M3e LINE L1 1414 1675 -4890 8849 241 35 17 chr21 12017957 12020813 -32886757 + L1M3e LINE L1 2007 4810 -2755 1454 188 14 10 chr21 12020813 12021105 -32886465 + AluJo SINE Alu 1 293 -19 792 57 48 0 chr21 12021113 12021237 -32886333 + GA-rich Low_complexity Low_complexity 3 132 0 8849 241 35 17 chr21 12021237 12022368 -32885202 + L1M3e LINE L1 4816 6071 -1494 429 293 11 6 chr21 12024650 12024824 -32882746 + (CA)n Simple_repeat Simple_repeat 1 175 0 269 325 0 0 chr21 12024851 12024965 -32882605 + (CA)n Simple_repeat Simple_repeat 1 114 0 1110 128 5 32 chr21 12025981 12026168 -32881402 + MER49 LTR ERV1 715 896 -27 22 56 0 0 chr21 12027759 12027795 -32879775 + AT_rich Low_complexity Low_complexity 1 36 0 38 39 0 0 chr21 12028555 12028607 -32878963 + AT_rich Low_complexity Low_complexity 1 52 0 2053 111 6 22 chr21 12028760 12029075 -32878495 - AluSp SINE Alu -1 312 3 669 296 47 18 chr21 12029339 12029677 -32877893 - L1MEc LINE L1 -3614 2812 2465 460 228 232 49 chr21 12029726 12029972 -32877598 - L1MEc LINE L1 -4209 2398 2108 247 326 23 32 chr21 12029995 12030213 -32877357 - L1MEc LINE L1 -4503 1923 1708 21 0 0 0 chr21 12030884 12030905 -32876665 + AT_rich Low_complexity Low_complexity 1 21 0 259 293 38 19 chr21 12031773 12031879 -32875691 + MERVL LTR ERVL 2855 2962 -2523 920 79 0 16 chr21 12035914 12036031 -32871539 + AluY SINE Alu 1 117 -194 215 31 31 0 chr21 12036031 12036063 -32871507 + (TAAA)n Simple_repeat Simple_repeat 1 33 0 28 79 0 0 chr21 12036242 12036305 -32871265 + AT_rich Low_complexity Low_complexity 1 63 0 316 106 85 0 chr21 12038435 12038482 -32869088 + AluJ/FRAM SINE Alu 229 279 -23 200 31 62 0 chr21 12038485 12038517 -32869053 + A-rich Low_complexity Low_complexity 2 35 0 2013 120 0 3 chr21 12038520 12038820 -32868750 + AluSp SINE Alu 1 299 -14 1627 166 34 7 chr21 12039132 12039427 -32868143 - AluJb SINE Alu -9 303 1 212 0 36 0 chr21 12039511 12039539 -32868031 + (TTTTG)n Simple_repeat Simple_repeat 3 31 0 312 232 71 30 chr21 12039581 12039680 -32867890 + MIR SINE MIR 112 214 -48 2101 103 3 0 chr21 12039686 12039988 -32867582 - AluSx SINE Alu -9 303 1 443 244 128 45 chr21 12040004 12040160 -32867410 - L2 LINE L2 -26 3287 3119 1953 134 10 3 chr21 12040425 12040732 -32866838 + AluJb SINE Alu 4 312 0 188 330 11 22 chr21 12040782 12040873 -32866697 - MIR SINE MIR -57 205 116 313 179 107 80 chr21 12042376 12042488 -32865082 + L1MCa LINE L1 1957 2071 -4355 260 291 14 7 chr21 12042494 12042642 -32864928 + (TA)n Simple_repeat Simple_repeat 1 149 0 1141 130 16 0 chr21 12042674 12042858 -32864712 - AluSp SINE Alu -10 303 117 1597 231 47 42 chr21 12042858 12043452 -32864118 - L1M4 LINE L1 -921 5225 4629 21339 102 17 5 chr21 12043567 12047847 -32859723 + L1PA6 LINE L1 13 4337 -1809 4425 81 35 23 chr21 12047848 12048955 -32858615 + MER11A LTR ERVK 1 1266 0 8219 66 4 8 chr21 12048956 12050776 -32856794 + L1PA6 LINE L1 4334 6152 -2 2236 111 0 3 chr21 12051189 12051486 -32856084 - AluSg SINE Alu -14 296 1 1624 324 77 29 chr21 12051631 12052732 -32854838 - L2 LINE L2 -8 3305 2157 653 164 0 49 chr21 12053120 12053242 -32854328 - AluJb SINE Alu -195 117 2 5067 12 0 7 chr21 12053467 12054039 -32853531 - L1HS LINE L1 -1 6154 5587 246 62 0 0 chr21 12054039 12054071 -32853499 + (A)n Simple_repeat Simple_repeat 1 32 0 544 95 0 12 chr21 12054269 12054353 -32853217 - L1PB4 LINE L1 -2 6154 6072 610 175 38 60 chr21 12054416 12054599 -32852971 - L1MC5 LINE L1 -395 7566 7388 274 143 150 88 chr21 12054594 12054741 -32852829 + L1MC5 LINE L1 7575 7730 -231 * 4771 187 30 28 chr21 12055393 12056282 -32851288 + MER54A LTR ERVL 10 900 -1 25 99 0 0 chr21 12057194 12057275 -32850295 + AT_rich Low_complexity Low_complexity 1 81 0 21 0 0 0 chr21 12058571 12058592 -32848978 + AT_rich Low_complexity Low_complexity 1 21 0 249 258 30 0 chr21 12058592 12058658 -32848912 + MIR SINE MIR 64 131 -131 526 269 161 8 chr21 12059648 12059897 -32847673 + LTR16A1 LTR ERVL 168 454 -3 1711 194 148 17 chr21 12060081 12060494 -32847076 + MLT1C LTR MaLR 1 467 0 2118 100 4 0 chr21 12060745 12061044 -32846526 + AluSp SINE Alu 11 310 0 289 368 0 7 chr21 12061102 12061238 -32846332 + HERV16 LTR ERVL 527 661 -4335 815 176 0 0 chr21 12061820 12061945 -32845625 + FLAM_C SINE Alu 1 125 -18 28 0 0 0 chr21 12061945 12061973 -32845597 + AT_rich Low_complexity Low_complexity 1 28 0 425 317 9 2 chr21 12062017 12062242 -32845328 - LTR16A1 LTR ERVL -22 435 162 2178 123 0 0 chr21 12062298 12062591 -32844979 + AluSg SINE Alu 1 293 -17 1726 184 59 6 chr21 12062705 12063042 -32844528 + MLT1A1 LTR MaLR 11 365 0 1885 117 8 8 chr21 12063421 12063686 -32843884 + AluSq SINE Alu 46 310 -3 30 0 0 0 chr21 12063975 12064005 -32843565 + AT_rich Low_complexity Low_complexity 1 30 0 439 257 9 0 chr21 12064277 12064390 -32843180 + LTR43 LTR ERV1 183 296 -306 2011 219 120 35 chr21 12064646 12065475 -32842095 - LTR1B LTR ERV1 0 922 1 233 202 101 67 chr21 12065710 12065799 -32841771 - MARNA DNA Mariner -480 106 15 878 227 99 6 chr21 12066644 12066816 -32840754 + MER5A DNA MER1_type 1 188 -1 467 205 0 0 chr21 12067609 12067692 -32839878 + MER5B DNA MER1_type 92 174 -4 519 122 0 0 chr21 12068290 12068364 -32839206 - MADE1 DNA Mariner -5 75 2 239 308 0 0 chr21 12068402 12068454 -32839116 + L2 LINE L2 3210 3261 -11 22 0 0 0 chr21 12068963 12068985 -32838585 + AT_rich Low_complexity Low_complexity 1 22 0 23 68 0 0 chr21 12069365 12069409 -32838161 + AT_rich Low_complexity Low_complexity 1 44 0 1857 161 3 3 chr21 12070876 12071167 -32836403 + AluSx SINE Alu 1 291 -21 230 185 31 46 chr21 12071229 12071294 -32836276 + MLT1L LTR MaLR 104 167 -382 395 336 78 35 chr21 12071623 12072045 -32835525 + MLT1L LTR MaLR 174 613 -2 21 0 0 0 chr21 12072150 12072171 -32835399 + AT_rich Low_complexity Low_complexity 1 21 0 2144 113 3 10 chr21 12072172 12072473 -32835097 + AluSc SINE Alu 1 299 -10 313 309 36 24 chr21 12072607 12072775 -32834795 + HAL1 LINE L1 1136 1305 -1202 753 270 145 54 chr21 12072938 12073095 -32834475 - L1ME3A LINE L1 -9 6161 6020 1935 157 3 7 chr21 12073095 12073388 -32834182 - AluSx SINE Alu -20 292 1 753 270 145 54 chr21 12073388 12073693 -32833877 - L1ME3A LINE L1 -150 6020 5657 489 302 17 6 chr21 12074306 12074478 -32833092 - L1MC4 LINE L1 -145 7897 7724 664 219 55 7 chr21 12075135 12075281 -32832289 - L1MC4a LINE L1 -1052 6756 6604 199 290 58 77 chr21 12075832 12076039 -32831531 - L2 LINE L2 -1857 1457 1255 658 245 19 13 chr21 12076104 12076263 -32831307 - MER5B DNA MER1_type -18 160 1 518 115 0 13 chr21 12076564 12076642 -32830928 - MADE1 DNA Mariner -3 77 1 392 295 10 90 chr21 12077139 12077339 -32830231 - MIR3 SINE MIR -5 203 20 228 302 88 33 chr21 12078687 12078869 -32828701 + L3 LINE CR1 1216 1407 -170 266 252 26 78 chr21 12079277 12079392 -32828178 + MIR SINE MIR 112 220 -42 882 179 125 76 chr21 12085417 12085641 -32821929 + MER46A DNA MER2_type 2 236 0 1858 142 16 26 chr21 12085681 12085984 -32821586 + AluSx SINE Alu 1 300 -12 914 221 39 0 chr21 12087686 12087867 -32819703 + MER5A DNA MER1_type 2 189 0 255 310 40 0 chr21 12089797 12089897 -32817673 - MER94 DNA DNA 0 134 31 219 353 39 29 chr21 12091092 12091194 -32816376 - L2 LINE L2 -56 3216 3114 1673 204 6 3 chr21 12091538 12091857 -32815713 + L1MC2 LINE L1 6024 6343 -1 2113 286 58 43 chr21 12092030 12092133 -32815437 - L2 LINE L2 -784 2530 2430 634 264 74 0 chr21 12092133 12092296 -32815274 + MER96 DNA MER1_type 1 175 0 2113 286 58 43 chr21 12092296 12093001 -32814569 - L2 LINE L2 -884 2430 1710 21 71 0 0 chr21 12093705 12093747 -32813823 + AT_rich Low_complexity Low_complexity 1 42 0 2191 128 0 0 chr21 12095292 12095582 -32811988 - AluSg SINE Alu -20 290 1 1056 157 65 11 chr21 12095791 12095976 -32811594 + L1PA16 LINE L1 5963 6157 -9 733 165 8 0 chr21 12095852 12095979 -32811591 + L1PA16 LINE L1 6033 6160 -6 23 0 0 0 chr21 12096529 12096552 -32811018 + AT_rich Low_complexity Low_complexity 1 23 0 236 309 161 20 chr21 12097012 12097161 -32810409 - MIR3 SINE MIR -23 185 16 599 281 123 62 chr21 12097804 12098210 -32809360 + LTR33A LTR ERVL 1 431 -92 426 353 4 50 chr21 12098228 12098469 -32809101 - MLT1K LTR MaLR -82 506 277 941 320 70 23 chr21 12098662 12099146 -32808424 + LTR33 LTR ERVL 3 509 -12 199 415 15 7 chr21 12099163 12099298 -32808272 - MIR SINE MIR -109 153 18 21 0 0 0 chr21 12100457 12100478 -32807092 + AT_rich Low_complexity Low_complexity 1 21 0 333 0 0 0 chr21 12100549 12100586 -32806984 + (TTTA)n Simple_repeat Simple_repeat 3 39 0 2314 96 0 0 chr21 12100586 12100879 -32806691 - L1PA7 LINE L1 -16 6138 5846 296 302 73 10 chr21 12101157 12101253 -32806317 + L2 LINE L2 3151 3252 -20 24 53 0 0 chr21 12101433 12101471 -32806099 + AT_rich Low_complexity Low_complexity 1 38 0 1230 223 82 62 chr21 12101746 12101784 -32805786 + MLT1C LTR MaLR 6 42 -425 1961 177 3 62 chr21 12101784 12102123 -32805447 - MLT1A1 LTR MaLR 0 365 50 2202 98 35 0 chr21 12102123 12102410 -32805160 + AluSx SINE Alu 1 297 -15 1961 177 3 62 chr21 12102410 12102454 -32805116 - MLT1A1 LTR MaLR -315 50 5 1230 223 82 62 chr21 12102454 12102868 -32804702 + MLT1C LTR MaLR 42 467 0 29 28 0 0 chr21 12103157 12103193 -32804377 + AT_rich Low_complexity Low_complexity 1 36 0 2637 146 82 11 chr21 12103976 12104343 -32803227 - L1MB2 LINE L1 -2 6169 5759 261 0 0 0 chr21 12104343 12104372 -32803198 + (TA)n Simple_repeat Simple_repeat 2 30 0 2637 146 82 11 chr21 12104372 12104482 -32803088 - L1MB2 LINE L1 -412 5759 5658 1787 189 0 3 chr21 12104650 12104952 -32802618 + AluJo SINE Alu 1 301 -11 1192 55 6 22 chr21 12104952 12104970 -32802600 + (GAAA)n Simple_repeat Simple_repeat 1 196 0 1192 55 6 22 chr21 12104970 12105152 -32802418 + (GAAA)n Simple_repeat Simple_repeat 2 180 0 1354 181 45 84 chr21 12105484 12105843 -32801727 - MLT1A1 LTR MaLR 0 365 21 2314 65 58 0 chr21 12106089 12106383 -32801187 - AluSp SINE Alu -2 311 1 2215 110 7 0 chr21 12106621 12106911 -32800659 - AluSq SINE Alu -21 292 1 424 263 28 68 chr21 12107042 12107258 -32800312 - MIR SINE MIR -53 209 1 263 257 40 50 chr21 12107517 12107618 -32799952 + MLT2E LTR ERVL 32 131 -497 831 216 51 31 chr21 12107984 12108239 -32799331 - LTR37B LTR ERV1 0 468 209 393 295 52 52 chr21 12108377 12108570 -32799000 - MIR SINE MIR -59 203 11 1651 93 0 0 chr21 12108803 12109018 -32798552 - L1PA6 LINE L1 0 6154 5940 620 216 33 39 chr21 12109455 12109564 -32798006 + MIR SINE MIR 14 123 -139 4640 116 32 32 chr21 12109564 12110255 -32797315 - LTR8 LTR ERV1 0 691 1 620 216 33 39 chr21 12110255 12110298 -32797272 + MIR SINE MIR 123 165 -97 1817 144 22 22 chr21 12112523 12112835 -32794735 + AluJb SINE Alu 1 312 0 211 333 25 0 chr21 12112843 12112924 -32794646 + MIR SINE MIR 160 242 -20 225 0 0 0 chr21 12112962 12112987 -32794583 + (T)n Simple_repeat Simple_repeat 1 25 0 315 221 35 62 chr21 12113127 12113240 -32794330 - MLT1J1 LTR MaLR -15 431 322 967 189 15 48 chr21 12113250 12113399 -32794171 - MLT1B LTR MaLR 0 390 248 4653 151 67 89 chr21 12113399 12114495 -32793075 - MER11C LTR ERVK 0 1071 1 967 189 15 48 chr21 12114495 12114551 -32793019 - MLT1B LTR MaLR -142 248 192 705 255 118 35 chr21 12114627 12114905 -32792665 - MLT1J1 LTR MaLR -133 313 9 233 330 58 75 chr21 12116870 12117058 -32790512 + MIR SINE MIR 25 209 -53 2070 190 11 6 chr21 12118051 12118414 -32789156 - MLT1A1 LTR MaLR 0 365 1 212 175 0 0 chr21 12120106 12120146 -32787424 + A-rich Low_complexity Low_complexity 2 41 0 184 307 45 23 chr21 12120927 12121015 -32786555 + MIR SINE MIR 58 147 -115 891 124 51 23 chr21 12121235 12121543 -32786027 + LTR7 LTR ERV1 1 450 0 1454 206 57 29 chr21 12122224 12122574 -32784996 + MER45B DNA AcHobo 445 804 -236 238 292 88 0 chr21 12122601 12122714 -32784856 + MIR SINE MIR 77 199 -63 358 232 0 0 chr21 12123861 12123930 -32783640 - L2 LINE L2 -3 3310 3242 333 352 31 0 chr21 12124034 12124162 -32783408 - MIR3 SINE MIR -42 166 35 275 71 24 0 chr21 12124560 12124602 -32782968 + (TC)n Simple_repeat Simple_repeat 2 44 0 592 300 55 23 chr21 12125608 12125828 -32781742 - MIR SINE MIR -8 254 28 343 293 76 5 chr21 12126136 12126334 -32781236 + MIR SINE MIR 13 228 -34 2522 51 0 0 chr21 12126871 12127163 -32780407 - AluY SINE Alu -19 292 1 1509 46 20 20 chr21 12127228 12127425 -32780145 - BC200 scRNA scRNA -3 197 1 496 283 127 58 chr21 12127605 12127810 -32779760 + MLT1K LTR MaLR 44 262 -326 552 95 0 0 chr21 12127833 12127917 -32779653 + (GA)n Simple_repeat Simple_repeat 1 84 0 459 0 0 0 chr21 12127917 12127968 -32779602 + (TG)n Simple_repeat Simple_repeat 1 51 0 3849 158 14 33 chr21 12129219 12129911 -32777659 - L1MA5 LINE L1 0 6300 5622 272 218 129 10 chr21 12130887 12130988 -32776582 + HsTC2c DNA Tc2 615 727 -2 25 0 0 0 chr21 12131248 12131273 -32776297 + AT_rich Low_complexity Low_complexity 1 25 0 355 284 57 51 chr21 12132269 12132445 -32775125 + MIR3 SINE MIR 16 192 -16 720 230 36 12 chr21 12132465 12132630 -32774940 - MER45A DNA AcHobo 0 178 10 312 330 40 29 chr21 12133555 12133750 -32773820 + MIR3 SINE MIR 12 210 -52 2280 108 0 3 chr21 12133771 12134076 -32773494 + AluSx SINE Alu 2 305 -7 1852 131 31 17 chr21 12134106 12134396 -32773174 - AluSq SINE Alu -19 294 1 629 247 14 0 chr21 12137185 12137331 -32770239 + MIR SINE MIR 113 260 -2 513 352 94 4 chr21 12137439 12137545 -32770025 + MIR SINE MIR 1 96 -166 7904 71 2 2 chr21 12137545 12138514 -32769056 + LTR5 LTR ERVK 1 969 0 513 352 94 4 chr21 12138514 12138640 -32768930 + MIR SINE MIR 96 254 -8 7595 33 1 0 chr21 12140128 12141013 -32766557 - L1PA3 LINE L1 0 6155 5270 2243 94 0 10 chr21 12143697 12143994 -32763576 - AluSg1 SINE Alu -15 294 1 324 127 0 0 chr21 12144115 12144170 -32763400 + (TG)n Simple_repeat Simple_repeat 1 55 0 1953 145 13 7 chr21 12145988 12146298 -32761272 - AluSx SINE Alu 0 312 1 26 0 0 0 chr21 12146525 12146551 -32761019 + AT_rich Low_complexity Low_complexity 1 26 0 582 279 53 0 chr21 12146551 12146738 -32760832 + MER67D LTR ERV1 225 400 -114 343 208 15 0 chr21 12147761 12147891 -32759679 + (CA)n Simple_repeat Simple_repeat 2 133 0 297 354 85 32 chr21 12149505 12149881 -32757689 + L2 LINE L2 2449 2844 -470 31 68 0 0 chr21 12150102 12150161 -32757409 + AT_rich Low_complexity Low_complexity 1 59 0 23 78 0 0 chr21 12150728 12150779 -32756791 + AT_rich Low_complexity Low_complexity 1 51 0 261 337 72 6 chr21 12152000 12152166 -32755404 + L1MCc LINE L1 19 195 -6228 1264 206 11 28 chr21 12152362 12152649 -32754921 - AluJo SINE Alu -30 282 1 1411 161 62 46 chr21 12153398 12153700 -32753870 - MSTB LTR MaLR -3 423 117 977 152 168 0 chr21 12153700 12153801 -32753769 - MER30 DNA MER1_type 0 230 147 474 18 0 0 chr21 12153801 12153856 -32753714 + (TG)n Simple_repeat Simple_repeat 2 56 0 977 152 168 0 chr21 12153856 12153951 -32753619 - MER30 DNA MER1_type -83 147 1 836 130 16 0 chr21 12153951 12154073 -32753497 - MSTB LTR MaLR -302 124 1 339 321 72 45 chr21 12154098 12154363 -32753207 - L1ME LINE L1 -547 5623 5352 1588 273 37 5 chr21 12154720 12155127 -32752443 + MER70A LTR ERVL 4 423 -49 23 33 0 0 chr21 12155843 12155873 -32751697 + AT_rich Low_complexity Low_complexity 1 30 0 3154 134 24 2 chr21 12155880 12156386 -32751184 + L1PB1 LINE L1 5631 6147 -4 24 53 0 0 chr21 12158080 12158118 -32749452 + AT_rich Low_complexity Low_complexity 1 38 0 1235 203 45 41 chr21 12158118 12158408 -32749162 - AluJb SINE Alu -11 291 1 198 208 167 0 chr21 12159173 12159245 -32748325 + L3 LINE CR1 64 147 -1430 255 309 0 24 chr21 12159253 12159337 -32748233 - MIR SINE MIR -20 242 161 258 164 0 0 chr21 12159350 12159405 -32748165 + (CA)n Simple_repeat Simple_repeat 1 55 0 522 143 276 0 chr21 12159453 12159551 -32748019 + FLAM_C SINE Alu 2 126 -17 760 283 63 60 chr21 12159795 12160232 -32747338 - MLT1K LTR MaLR -2 586 76 283 318 140 0 chr21 12160637 12160744 -32746826 + MIR3 SINE MIR 36 157 -51 1533 185 193 10 chr21 12160745 12161134 -32746436 - LTR46 LTR ERV1 0 460 1 430 318 124 19 chr21 12161176 12161443 -32746127 - L2 LINE L2 -24 3289 2995 501 224 94 24 chr21 12162322 12162492 -32745078 + LTR33 LTR ERVL 277 458 -63 479 326 133 0 chr21 12162828 12163046 -32744524 + MIR SINE MIR 15 261 -1 382 330 0 0 chr21 12163188 12163306 -32744264 + MIR SINE MIR 23 140 -122 1106 261 28 6 chr21 12163429 12163755 -32743815 - LTR16C LTR ERVL -29 462 130 251 291 103 22 chr21 12164087 12164256 -32743314 - MIR SINE MIR -55 207 26 571 180 0 4 chr21 12168419 12168587 -32738983 + HSAT5 Satellite Satellite 1 167 -3 351 171 34 57 chr21 12168807 12168895 -32738675 + HSAT5 Satellite Satellite 1 86 0 257 256 39 13 chr21 12168974 12169052 -32738518 + HSAT5 Satellite Satellite 5 84 -2 330 192 25 19 chr21 12169141 12169232 -32738338 + HSAT5 Satellite Satellite 1 91 -7 * 460 242 131 66 chr21 12169216 12169414 -32738156 - MSTA LTR MaLR -141 285 75 740 238 189 20 chr21 12169418 12169662 -32737908 + THE1-int LTR MaLR 907 1191 -389 282 214 18 0 chr21 12169650 12169706 -32737864 - THE1-int LTR MaLR -613 967 911 * 308 208 89 40 chr21 12169771 12169872 -32737698 - MSTA LTR MaLR -322 106 1 1122 208 96 20 chr21 12169872 12170165 -32737405 - MSTA-int LTR MaLR 0 1651 1337 348 216 102 11 chr21 12170190 12170278 -32737292 - MSTA LTR MaLR -257 171 76 429 208 21 10 chr21 12170341 12170437 -32737133 - MSTA LTR MaLR -331 97 1 6141 225 47 44 chr21 12170437 12172057 -32735513 - MSTA-int LTR MaLR 0 1651 28 398 234 41 48 chr21 12172054 12172199 -32735371 + THE1-int LTR MaLR 465 608 -972 * 867 238 82 12 chr21 12172235 12172491 -32735079 - MSTA LTR MaLR -60 368 95 942 189 189 20 chr21 12172506 12172750 -32734820 + THE1-int LTR MaLR 907 1191 -389 275 214 18 0 chr21 12172738 12172794 -32734776 - THE1-int LTR MaLR -613 967 911 * 504 179 21 0 chr21 12172888 12172983 -32734587 - MSTA LTR MaLR -331 97 1 1478 193 6 43 chr21 12172983 12173330 -32734240 - MSTA-int LTR MaLR 0 1651 1318 314 226 32 0 chr21 12173337 12173399 -32734171 - MSTA LTR MaLR -269 159 96 425 209 19 38 chr21 12173468 12173573 -32733997 - MSTA LTR MaLR -325 103 1 5806 230 52 47 chr21 12173573 12175184 -32732386 - MSTA-int LTR MaLR 0 1651 34 315 275 37 9 chr21 12175188 12175297 -32732273 + THE1-int LTR MaLR 466 577 -1003 971 195 106 39 chr21 12175339 12175621 -32731949 - MSTA LTR MaLR -52 376 76 750 191 191 56 chr21 12175625 12175876 -32731694 + THE1-int LTR MaLR 907 1191 -389 269 222 19 0 chr21 12175866 12175920 -32731650 - THE1-int LTR MaLR -615 965 911 * 3755 111 27 4 chr21 12175991 12176541 -32731029 + LTR6A LTR ERV1 1 563 -1 412 193 18 46 chr21 12176560 12176669 -32730901 - MSTA LTR MaLR -322 106 1 1244 211 40 46 chr21 12176669 12176996 -32730574 - MSTA-int LTR MaLR 0 1651 1327 229 318 103 9 chr21 12176998 12177105 -32730465 - MSTA LTR MaLR -252 176 60 382 235 10 0 chr21 12177154 12177252 -32730318 - MSTA LTR MaLR -329 99 1 546 198 9 0 chr21 12177252 12177368 -32730202 - MSTA-int LTR MaLR 0 1651 1535 * 4813 236 65 27 chr21 12177364 12178678 -32728892 - MSTA-int LTR MaLR -262 1389 26 471 230 166 7 chr21 12178674 12178813 -32728757 + MST-int LTR MaLR 507 667 -984 * 1048 231 52 8 chr21 12178841 12179109 -32728461 - MSTA LTR MaLR -52 376 97 669 239 202 29 chr21 12179130 12179373 -32728197 + THE1-int LTR MaLR 907 1191 -389 299 196 18 0 chr21 12179361 12179417 -32728153 - THE1-int LTR MaLR -613 967 911 * 293 197 33 0 chr21 12179533 12179594 -32727976 - MSTA LTR MaLR -363 65 3 1256 213 40 43 chr21 12179596 12179924 -32727646 - MSTA-int LTR MaLR 0 1651 1325 301 245 113 9 chr21 12179924 12180030 -32727540 - MSTA LTR MaLR -252 176 60 468 227 21 0 chr21 12180079 12180176 -32727394 - MSTA LTR MaLR -329 99 1 4433 247 72 20 chr21 12180176 12181340 -32726230 - MSTA-int LTR MaLR 0 1651 427 788 223 8 10 chr21 12181338 12181542 -32726028 - MSTA-int LTR MaLR -1269 102 28 * 581 182 156 10 chr21 12181538 12181689 -32725881 + MST-int LTR MaLR 466 661 -963 * 931 239 59 43 chr21 12181697 12182002 -32725568 - MSTA LTR MaLR -43 385 76 707 222 226 21 chr21 12182006 12182240 -32725330 + THE1-int LTR MaLR 907 1188 -392 289 193 18 0 chr21 12182231 12182288 -32725282 - THE1-int LTR MaLR -613 967 910 * 447 196 22 5 chr21 12182375 12182481 -32725089 - MSTA LTR MaLR -262 113 1 1262 208 16 38 chr21 12182481 12182799 -32724771 - MSTA-int LTR MaLR 0 1651 1341 285 213 41 107 chr21 12182805 12182927 -32724643 - MSTA LTR MaLR -257 171 58 460 219 10 0 chr21 12182952 12183048 -32724522 - MSTA LTR MaLR -331 97 1 545 189 27 0 chr21 12183048 12183159 -32724411 - MSTA-int LTR MaLR 0 1651 1538 454 202 10 0 chr21 12183282 12183381 -32724189 - MSTA LTR MaLR -328 100 1 6041 239 51 21 chr21 12183381 12184959 -32722611 - MSTA-int LTR MaLR 0 1651 28 311 303 32 26 chr21 12184953 12185108 -32722462 + THE1-int LTR MaLR 462 617 -963 * 980 222 66 28 chr21 12185126 12185414 -32722156 - MSTA LTR MaLR -54 374 76 609 267 192 21 chr21 12185418 12185658 -32721912 + THE1-int LTR MaLR 907 1187 -393 245 232 18 0 chr21 12185650 12185706 -32721864 - MSTA-int LTR MaLR -613 967 911 * 549 146 21 10 chr21 12185791 12185887 -32721683 - MSTA LTR MaLR -331 97 1 1472 202 3 40 chr21 12185887 12186233 -32721337 - MSTA-int LTR MaLR 0 1651 1319 356 214 117 10 chr21 12186233 12186336 -32721234 - MSTA LTR MaLR -257 171 58 421 232 10 0 chr21 12186381 12186480 -32721090 - MSTA LTR MaLR -328 100 1 389 158 26 0 chr21 12186480 12186556 -32721014 - MSTA-int LTR MaLR 0 1651 1574 324 177 0 32 chr21 12186558 12186620 -32720950 + MSTA LTR MaLR 317 376 -52 225 179 0 0 chr21 12186654 12186693 -32720877 - MSTA-int LTR MaLR -990 661 623 5622 229 50 36 chr21 12186693 12188228 -32719342 - MSTA-int LTR MaLR -68 1583 28 451 245 32 32 chr21 12188223 12188378 -32719192 + THE1-int LTR MaLR 463 617 -963 * 1040 243 56 4 chr21 12188395 12188662 -32718908 - MSTA LTR MaLR -52 376 96 683 232 195 25 chr21 12188686 12188927 -32718643 + THE1-int LTR MaLR 907 1188 -392 260 193 35 18 chr21 12188917 12188974 -32718596 - THE1-int LTR MaLR -612 968 911 * 443 208 10 0 chr21 12189070 12189166 -32718404 - MSTA LTR MaLR -331 97 1 1370 230 3 38 chr21 12189168 12189512 -32718058 - MSTA-int LTR MaLR -2 1649 1318 330 227 18 73 chr21 12189519 12189629 -32717941 - MSTA LTR MaLR -269 159 56 361 253 10 0 chr21 12189687 12189786 -32717784 - MSTA LTR MaLR -328 100 1 5899 226 51 47 chr21 12189786 12191404 -32716166 - MSTA-int LTR MaLR 0 1651 28 359 203 154 63 chr21 12191401 12191544 -32716026 + MST-int LTR MaLR 506 661 -990 * 934 234 78 8 chr21 12191586 12191842 -32715728 - MSTA LTR MaLR -60 368 95 836 188 208 21 chr21 12191857 12192097 -32715473 + THE1-int LTR MaLR 907 1191 -389 246 214 18 0 chr21 12192085 12192141 -32715429 - MST-int LTR MaLR -616 1035 979 * 401 202 32 0 chr21 12192235 12192329 -32715241 - MSTA LTR MaLR -331 97 1 1343 205 11 49 chr21 12192329 12192676 -32714894 - MSTA-int LTR MaLR 0 1651 1318 300 229 33 0 chr21 12192683 12192744 -32714826 - MSTA LTR MaLR -269 159 97 450 224 20 0 chr21 12192822 12192920 -32714650 - MSTA LTR MaLR -328 100 1 5938 226 54 41 chr21 12192920 12194518 -32713052 - MSTA-int LTR MaLR 0 1651 34 292 269 46 9 chr21 12194522 12194630 -32712940 + THE1-int LTR MaLR 466 577 -1003 931 203 76 54 chr21 12194672 12194948 -32712622 - MSTA LTR MaLR -52 376 95 671 234 182 22 chr21 12194961 12195192 -32712378 + MST-int LTR MaLR 976 1243 -408 239 250 18 0 chr21 12195190 12195246 -32712324 - THE1-int LTR MaLR -613 967 911 * 3788 106 27 4 chr21 12195317 12195867 -32711703 + LTR6A LTR ERV1 1 563 -1 423 207 34 9 chr21 12195884 12195992 -32711578 - MSTA LTR MaLR -262 113 1 1132 217 50 43 chr21 12195992 12196315 -32711255 - MSTA-int LTR MaLR 0 1651 1327 302 224 131 37 chr21 12196317 12196424 -32711146 - MSTA LTR MaLR -252 176 60 404 222 9 37 chr21 12196463 12196571 -32710999 - MSTA LTR MaLR -323 105 1 583 181 9 0 chr21 12196571 12196687 -32710883 - MSTA-int LTR MaLR 0 1651 1535 * 4752 234 67 30 chr21 12196683 12197992 -32709578 - MSTA-int LTR MaLR -262 1389 32 499 226 161 7 chr21 12197997 12198134 -32709436 + MST-int LTR MaLR 510 667 -984 1016 235 67 11 chr21 12198162 12198447 -32709123 - MSTA LTR MaLR -52 376 76 746 231 193 21 chr21 12198451 12198694 -32708876 + THE1-int LTR MaLR 907 1191 -389 271 214 18 0 chr21 12198682 12198738 -32708832 - THE1-int LTR MaLR -613 967 911 * 261 218 59 50 chr21 12198814 12198915 -32708655 - MSTA LTR MaLR -324 104 3 1261 213 40 43 chr21 12198917 12199245 -32708325 - MSTA-int LTR MaLR 0 1651 1325 297 245 113 9 chr21 12199245 12199351 -32708219 - MSTA LTR MaLR -252 176 60 468 227 21 0 chr21 12199400 12199497 -32708073 - MSTA LTR MaLR -329 99 1 5977 235 64 18 chr21 12199497 12201048 -32706522 - MSTA-int LTR MaLR 0 1651 28 515 208 156 10 chr21 12201044 12201195 -32706375 + MST-int LTR MaLR 466 661 -963 * 874 243 66 43 chr21 12201203 12201508 -32706062 - MSTA LTR MaLR -43 385 74 758 220 191 21 chr21 12201513 12201754 -32705816 + THE1-int LTR MaLR 907 1188 -392 265 172 17 35 chr21 12201745 12201803 -32705767 - THE1-int LTR MaLR -613 967 911 * 420 204 11 0 chr21 12201903 12201996 -32705574 - MSTA LTR MaLR -334 94 1 1064 223 22 47 chr21 12201996 12202315 -32705255 - MSTA-int LTR MaLR 0 1651 1341 302 219 49 85 chr21 12202321 12202403 -32705167 - MSTA LTR MaLR -257 171 93 467 208 10 0 chr21 12202475 12202571 -32704999 - MSTA LTR MaLR -331 97 1 615 159 9 0 chr21 12202571 12202684 -32704886 - MSTA-int LTR MaLR 0 1651 1538 349 236 0 39 chr21 12202696 12202823 -32704747 + C-rich Low_complexity Low_complexity 2 123 0 408 202 42 34 chr21 12202825 12202944 -32704626 - MSTA LTR MaLR -308 120 1 6191 229 52 22 chr21 12202944 12204521 -32703049 - MSTA-int LTR MaLR 0 1651 28 384 233 144 9 chr21 12204515 12204671 -32702899 + MST-int LTR MaLR 462 661 -963 * 1049 242 52 17 chr21 12204689 12204978 -32702592 - MSTA LTR MaLR -54 374 76 689 233 192 21 chr21 12204982 12205222 -32702348 + THE1-int LTR MaLR 907 1187 -393 230 250 18 0 chr21 12205214 12205270 -32702300 - THE1-int LTR MaLR -613 967 911 * 471 168 21 11 chr21 12205356 12205451 -32702119 - MSTA LTR MaLR -332 96 1 1337 226 3 41 chr21 12205451 12205792 -32701778 - MSTA-int LTR MaLR 0 1651 1324 337 234 149 0 chr21 12205792 12205899 -32701671 - MSTA LTR MaLR -248 180 58 371 263 10 0 chr21 12205944 12206043 -32701527 - MSTA LTR MaLR -328 100 1 405 145 26 0 chr21 12206043 12206119 -32701451 - MSTA-int LTR MaLR 0 1651 1574 279 163 0 0 chr21 12206131 12206174 -32701396 + MSTB LTR MaLR 323 365 -61 5689 221 52 37 chr21 12206254 12207786 -32699784 - MSTA-int LTR MaLR -68 1583 28 508 240 32 26 chr21 12207781 12207935 -32699635 + THE1-int LTR MaLR 463 617 -963 * 1068 242 55 10 chr21 12207952 12208241 -32699329 - MSTA LTR MaLR -52 376 75 671 228 195 25 chr21 12208243 12208484 -32699086 + THE1-int LTR MaLR 907 1188 -392 233 193 35 18 chr21 12208474 12208531 -32699039 - THE1-int LTR MaLR -612 968 911 * 464 208 10 0 chr21 12208627 12208723 -32698847 - MSTA LTR MaLR -331 97 1 1474 206 9 44 chr21 12208725 12209069 -32698501 - MSTA-int LTR MaLR -2 1649 1318 346 231 0 0 chr21 12209076 12209141 -32698429 - MSTA LTR MaLR -269 159 95 210 287 32 0 chr21 12209142 12209236 -32698334 + (CACCC)n Simple_repeat Simple_repeat 3 99 0 351 263 10 0 chr21 12209244 12209343 -32698227 - MSTA LTR MaLR -328 100 1 5895 223 52 45 chr21 12209344 12210955 -32696615 - MSTA-int LTR MaLR -1 1650 28 381 162 183 84 chr21 12210952 12211094 -32696476 + THE1-int LTR MaLR 465 661 -990 * 851 235 82 12 chr21 12211137 12211392 -32696178 - MSTA LTR MaLR -61 367 95 1000 176 189 20 chr21 12211407 12211651 -32695919 + THE1-int LTR MaLR 907 1191 -389 264 214 18 0 chr21 12211639 12211695 -32695875 - THE1-int LTR MaLR -613 967 911 * 486 189 21 0 chr21 12211789 12211884 -32695686 - MSTA LTR MaLR -331 97 1 1399 213 3 40 chr21 12211884 12212231 -32695339 - MSTA-int LTR MaLR 0 1651 1318 277 258 32 0 chr21 12212238 12212300 -32695270 - MSTA LTR MaLR -269 159 96 394 219 42 21 chr21 12212377 12212473 -32695097 - MSTA LTR MaLR -328 100 3 5900 232 53 33 chr21 12212475 12214061 -32693509 - MSTA-int LTR MaLR 0 1651 34 297 239 64 37 chr21 12214065 12214174 -32693396 + THE1-int LTR MaLR 466 577 -1003 914 206 76 54 chr21 12214216 12214492 -32693078 - MSTA LTR MaLR -52 376 95 729 211 194 22 chr21 12214504 12214736 -32692834 + THE1-int LTR MaLR 907 1178 -402 3791 104 27 4 chr21 12214859 12215409 -32692161 + LTR6A LTR ERV1 1 563 -1 443 200 21 0 chr21 12215440 12215535 -32692035 - MSTA LTR MaLR -331 97 1 1132 211 53 43 chr21 12215535 12215857 -32691713 - MSTA-int LTR MaLR 0 1651 1327 312 262 103 9 chr21 12215859 12215966 -32691604 - MSTA LTR MaLR -252 176 60 431 224 10 0 chr21 12216015 12216113 -32691457 - MSTA LTR MaLR -329 99 1 575 190 9 0 chr21 12216113 12216229 -32691341 - MSTA-int LTR MaLR 0 1651 1535 * 5143 221 59 27 chr21 12216225 12217545 -32690025 - MSTA-int LTR MaLR -262 1389 28 508 240 32 26 chr21 12217540 12217694 -32689876 + THE1-int LTR MaLR 463 617 -963 * 1019 242 57 4 chr21 12217714 12217978 -32689592 - MSTA LTR MaLR -55 373 96 666 228 195 25 chr21 12218002 12218243 -32689327 + THE1-int LTR MaLR 907 1188 -392 274 137 39 20 chr21 12218233 12218284 -32689286 - THE1-int LTR MaLR -612 968 917 * 446 215 20 4 chr21 12218375 12218482 -32689088 - MSTA LTR MaLR -251 113 1 1461 212 6 43 chr21 12218484 12218829 -32688741 - MSTA-int LTR MaLR -2 1649 1318 305 236 18 73 chr21 12218836 12218946 -32688624 - MSTA LTR MaLR -269 159 56 262 253 50 50 chr21 12219005 12219104 -32688466 - MSTA LTR MaLR -327 99 1 5457 237 60 24 chr21 12219104 12220668 -32686902 - MSTA-int LTR MaLR 0 1651 32 512 217 151 4 chr21 12220671 12220821 -32686749 + MST-int LTR MaLR 467 661 -963 1229 211 63 7 chr21 12220837 12221121 -32686449 - MSTA LTR MaLR -52 376 77 798 194 223 45 chr21 12221126 12221368 -32686202 + THE1-int LTR MaLR 907 1191 -389 301 179 18 0 chr21 12221356 12221412 -32686158 - THE1-int LTR MaLR -613 967 911 * 318 250 0 10 chr21 12221524 12221628 -32685942 - MSTA-int LTR MaLR -1521 130 28 * 456 225 162 0 chr21 12221625 12221767 -32685803 + MST-int LTR MaLR 506 670 -981 1284 245 26 47 chr21 12221792 12222176 -32685394 - MSTA LTR MaLR -52 376 1 1370 163 12 12 chr21 12222176 12222427 -32685143 - MSTA-int LTR MaLR 0 1651 1401 1334 185 0 0 chr21 12222424 12222662 -32684908 - MSTA-int LTR MaLR -1401 250 13 * 1316 246 95 3 chr21 12222691 12223028 -32684542 - MSTA LTR MaLR -60 368 1 2139 87 67 45 chr21 12225113 12225517 -32682053 + SN5 Other centromeric 1 413 -42 189 237 0 0 chr21 12225793 12225852 -32681718 + (TG)n Simple_repeat Simple_repeat 2 60 0 271 207 17 34 chr21 12226179 12226280 -32681290 + HSAT5 Satellite Satellite 1 99 -1 296 191 71 48 chr21 12226576 12226660 -32680910 + HSAT5 Satellite Satellite 1 86 0 1277 196 234 20 chr21 12227330 12227788 -32679782 + L1MC4 LINE L1 6819 7374 -668 250 305 0 12 chr21 12228646 12228728 -32678842 - L2 LINE L2 -227 3045 2965 21 0 0 0 chr21 12229352 12229373 -32678197 + AT_rich Low_complexity Low_complexity 1 21 0 2108 133 7 0 chr21 12229735 12230029 -32677541 + AluSc SINE Alu 1 296 -13 4474 172 43 19 chr21 12230189 12230852 -32676718 - L1PA16 LINE L1 0 6166 5467 207 0 0 0 chr21 12230852 12230875 -32676695 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 4474 172 43 19 chr21 12230875 12231327 -32676243 - L1PA16 LINE L1 -699 5467 5027 2004 147 17 0 chr21 12231364 12231664 -32675906 - AluSx SINE Alu -7 305 1 1972 117 3 45 chr21 12231842 12232151 -32675419 - AluSg1 SINE Alu -10 299 4 2082 135 3 0 chr21 12232182 12232479 -32675091 + AluSg SINE Alu 1 298 -12 378 267 0 0 chr21 12233429 12233530 -32674040 + L1MA9 LINE L1 6163 6263 -49 1447 210 14 30 chr21 12235956 12236251 -32671319 + AluJo SINE Alu 6 295 -17 2941 215 32 11 chr21 12236364 12237480 -32670090 + L1MA5 LINE L1 4808 5946 -354 969 256 31 8 chr21 12237481 12237739 -32669831 + AluJo SINE Alu 1 264 -48 1294 178 65 0 chr21 12237806 12238082 -32669488 + L1MA5 LINE L1 6001 6294 -6 727 312 85 17 chr21 12238119 12238498 -32669072 + MLT1G1 LTR MaLR 79 561 -34 2412 206 41 44 chr21 12239843 12240907 -32666663 + L1MB8 LINE L1 4771 5836 -342 2137 150 75 5 chr21 12240916 12241327 -32666243 + MER61C LTR ERV1 11 434 0 1230 214 68 12 chr21 12241327 12241650 -32665920 + L1MB8 LINE L1 5833 6173 -5 1222 242 88 22 chr21 12241870 12242234 -32665336 + MER4E LTR ERV1 1 388 -391 3229 119 44 0 chr21 12242330 12242810 -32664760 + L1PA10 LINE L1 5655 6155 -13 1939 147 3 58 chr21 12243196 12243522 -32664048 - AluSq SINE Alu -5 308 1 22 35 0 0 chr21 12244039 12244068 -32663502 + AT_rich Low_complexity Low_complexity 1 29 0 372 171 0 14 chr21 12244073 12244143 -32663427 - MER34C LTR ERV1 -94 491 423 1615 139 86 4 chr21 12244403 12244707 -32662863 + AluSg SINE Alu 1 326 0 2137 120 0 3 chr21 12245956 12246264 -32661306 - AluSg SINE Alu 0 307 1 2266 129 3 0 chr21 12246613 12246924 -32660646 - AluSx SINE Alu 0 312 1 1371 211 46 4 chr21 12247353 12247512 -32660058 - AluJb SINE Alu -20 292 114 225 0 0 0 chr21 12247512 12247537 -32660033 + (TTTA)n Simple_repeat Simple_repeat 2 26 0 1371 211 46 4 chr21 12247537 12247657 -32659913 - AluJb SINE Alu -198 114 1 1912 217 81 26 chr21 12248759 12249252 -32658318 + L1MB8 LINE L1 5653 6172 -6 269 269 103 0 chr21 12250316 12250394 -32657176 + L2 LINE L2 2722 2807 -507 897 233 40 18 chr21 12251108 12251383 -32656187 - L1MB7 LINE L1 0 6184 5904 5594 115 62 42 chr21 12251918 12253284 -32654286 - SVA Other Other -518 1381 432 2749 124 58 46 chr21 12253328 12254665 -32652905 - SVA Other Other -518 868 343 23 0 0 0 chr21 12256733 12256756 -32650814 + AT_rich Low_complexity Low_complexity 1 23 0 21 0 0 0 chr21 12257685 12257706 -32649864 + AT_rich Low_complexity Low_complexity 1 21 0 465 247 84 36 chr21 12257795 12258021 -32649549 - L1MB7 LINE L1 -478 5643 5404 2028 142 0 13 chr21 12258140 12258457 -32649113 + AluSq SINE Alu 1 313 0 34 42 0 0 chr21 12258645 12258693 -32648877 + AT_rich Low_complexity Low_complexity 1 48 0 24 53 0 0 chr21 12258769 12258807 -32648763 + AT_rich Low_complexity Low_complexity 1 38 0 634 47 23 0 chr21 12260467 12260553 -32647017 - L1PA5 LINE L1 -1 6153 6066 26 30 0 0 chr21 12262550 12262583 -32644987 + AT_rich Low_complexity Low_complexity 1 33 0 26 64 0 0 chr21 12262837 12262884 -32644686 + AT_rich Low_complexity Low_complexity 1 47 0 1480 238 30 0 chr21 12263273 12263571 -32643999 + AluJo SINE Alu 1 307 -5 211 200 0 0 chr21 12263792 12263832 -32643738 - L2 LINE L2 -12 3301 3262 1947 159 7 0 chr21 12264114 12264416 -32643154 - AluSx SINE Alu -8 304 1 1939 154 11 0 chr21 12264879 12265165 -32642405 - AluSp SINE Alu -24 289 1 22 56 0 0 chr21 12266785 12266821 -32640749 + AT_rich Low_complexity Low_complexity 1 36 0 1882 165 0 0 chr21 12266933 12267236 -32640334 + AluSx SINE Alu 6 308 -4 244 196 0 0 chr21 12268232 12268278 -32639292 + (CA)n Simple_repeat Simple_repeat 1 46 0 279 181 208 0 chr21 12270465 12270537 -32637033 + MER5A DNA MER1_type 20 106 -83 2336 89 0 0 chr21 12271400 12271693 -32635877 - AluY SINE Alu -18 293 1 1261 250 0 24 chr21 12271889 12272185 -32635385 - AluJo SINE Alu -23 289 1 1569 213 0 7 chr21 12272219 12272501 -32635069 + AluJb SINE Alu 3 282 -30 6367 47 0 0 chr21 12272887 12273658 -32633912 + L1PA5 LINE L1 5376 6146 -8 21 89 0 0 chr21 12273892 12273948 -32633622 + AT_rich Low_complexity Low_complexity 1 56 0 1244 210 30 54 chr21 12274044 12274339 -32633231 + AluJb SINE Alu 13 300 -12 1885 123 6 85 chr21 12274513 12274831 -32632739 - AluSx SINE Alu -19 293 1 649 206 0 0 chr21 12275084 12275191 -32632379 - FLAM_A SINE Alu -35 107 1 22 35 0 0 chr21 12276490 12276519 -32631051 + AT_rich Low_complexity Low_complexity 1 29 0 214 358 70 35 chr21 12278194 12278423 -32629147 + MIR SINE MIR 20 256 -6 616 232 0 24 chr21 12278575 12278700 -32628870 + FLAM_A SINE Alu 6 127 -15 647 166 45 19 chr21 12279146 12279303 -32628267 - MER21A LTR ERV1 -24 907 747 812 127 45 0 chr21 12279304 12279438 -32628132 + Tigger7 DNA MER2_type 2352 2491 0 2360 153 2 40 chr21 12280454 12280899 -32626671 + L1MC1 LINE L1 5906 6333 0 1883 164 17 0 chr21 12280909 12281202 -32626368 + AluSq SINE Alu 1 298 -15 28 0 0 0 chr21 12281239 12281267 -32626303 + AT_rich Low_complexity Low_complexity 1 28 0 2157 125 6 6 chr21 12281267 12281578 -32625992 + AluSx SINE Alu 1 311 -1 27 0 0 0 chr21 12281701 12281728 -32625842 + AT_rich Low_complexity Low_complexity 1 27 0 23 54 0 0 chr21 12282059 12282096 -32625474 + AT_rich Low_complexity Low_complexity 1 37 0 2588 192 46 7 chr21 12282129 12282670 -32624900 + MER68 LTR ERV1 1 562 0 1299 161 0 109 chr21 12283036 12283340 -32624230 + AluJb SINE Alu 1 271 -41 863 187 0 0 chr21 12283421 12283560 -32624010 + FAM SINE Alu 22 160 -25 188 119 0 48 chr21 12283880 12283922 -32623648 + (TATATG)n Simple_repeat Simple_repeat 2 41 0 1896 193 35 14 chr21 12284175 12284600 -32622970 + Tigger2a DNA MER2_type 1 434 0 21 71 0 0 chr21 12284600 12284642 -32622928 + AT_rich Low_complexity Low_complexity 1 42 0 22 0 0 0 chr21 12284869 12284891 -32622679 + AT_rich Low_complexity Low_complexity 1 22 0 546 217 0 0 chr21 12286155 12286261 -32621309 - U6 snRNA snRNA -1 106 1 21 0 0 0 chr21 12286377 12286398 -32621172 + AT_rich Low_complexity Low_complexity 1 21 0 593 178 127 0 chr21 12287209 12287327 -32620243 + FLAM_C SINE Alu 1 133 0 2135 129 0 0 chr21 12288261 12288548 -32619022 + AluSc SINE Alu 1 287 -22 196 270 200 26 chr21 12289241 12289356 -32618214 + L2 LINE L2 3138 3272 0 21 0 0 0 chr21 12290019 12290040 -32617530 + AT_rich Low_complexity Low_complexity 1 21 0 371 260 83 21 chr21 12290418 12290653 -32616917 - MER102a DNA MER1_type -1 329 81 342 0 0 0 chr21 12291543 12291581 -32615989 + (TG)n Simple_repeat Simple_repeat 1 38 0 280 223 330 11 chr21 12291587 12291681 -32615889 - FLAM_A SINE Alu -9 124 1 250 274 129 48 chr21 12291693 12291817 -32615753 + MER5A DNA MER1_type 56 189 0 527 248 187 46 chr21 12293485 12293705 -32613865 + MIR SINE MIR 4 251 -11 1656 186 3 7 chr21 12293709 12294004 -32613566 - AluJo SINE Alu -18 294 1 383 254 63 28 chr21 12294104 12294246 -32613324 + MER104 DNA Tc2 34 180 0 217 254 18 0 chr21 12294702 12294757 -32612813 + L2 LINE L2 3216 3271 -1 33 56 0 0 chr21 12294834 12294888 -32612682 + AT_rich Low_complexity Low_complexity 1 54 0 322 319 42 7 chr21 12295466 12295610 -32611960 - L1ME LINE L1 -445 5676 5528 256 192 48 32 chr21 12295812 12295937 -32611633 + (TA)n Simple_repeat Simple_repeat 1 127 0 2128 132 3 0 chr21 12295949 12296260 -32611310 + AluSx SINE Alu 1 312 0 24 32 0 0 chr21 12296306 12296337 -32611233 + AT_rich Low_complexity Low_complexity 1 31 0 809 243 99 55 chr21 12298100 12299353 -32608217 - HSREP522 Satellite telomeric 0 1308 1 733 199 4 57 chr21 12299739 12299987 -32607583 + HSREP522 Satellite telomeric 270 504 0 5007 211 58 9 chr21 12299987 12301287 -32606283 - L1 LINE L1 -1998 4148 2785 547 260 89 50 chr21 12301418 12301756 -32605814 + HSREP522 Satellite telomeric 2 352 -152 255 174 0 58 chr21 12302604 12302759 -32604811 + (CCCTG)n Simple_repeat Simple_repeat 1 146 0 190 167 8 56 chr21 12302915 12303041 -32604529 + (CCCTG)n Simple_repeat Simple_repeat 1 120 0 293 161 10 99 chr21 12303048 12303240 -32604330 + (GCCTG)n Simple_repeat Simple_repeat 5 179 0 342 153 0 118 chr21 12303259 12303462 -32604108 + (CCCTG)n Simple_repeat Simple_repeat 1 179 0 268 190 25 0 chr21 12303526 12303605 -32603965 + (CCCTAG)n Simple_repeat Simple_repeat 2 82 0 231 158 0 59 chr21 12303633 12303734 -32603836 + (CCCTG)n Simple_repeat Simple_repeat 1 95 0 328 168 0 102 chr21 12303846 12304013 -32603557 + (CCCTG)n Simple_repeat Simple_repeat 2 151 0 * 413 269 47 12 chr21 12303948 12304119 -32603451 + (CCCTAG)n Simple_repeat Simple_repeat 3 179 0 304 171 0 122 chr21 12304038 12304243 -32603327 + (CCCTG)n Simple_repeat Simple_repeat 1 180 0 * 331 159 5 101 chr21 12304291 12304480 -32603090 + (CCCTG)n Simple_repeat Simple_repeat 4 174 0 * 440 252 50 0 chr21 12304404 12304563 -32603007 + (CCCTAG)n Simple_repeat Simple_repeat 6 172 0 378 158 0 102 chr21 12304523 12304719 -32602851 + (CCCTG)n Simple_repeat Simple_repeat 1 176 0 * 311 119 0 89 chr21 12304751 12304919 -32602651 + (CCCTG)n Simple_repeat Simple_repeat 5 157 0 369 180 0 90 chr21 12304960 12305138 -32602432 + (CCCTG)n Simple_repeat Simple_repeat 4 165 0 227 121 7 94 chr21 12305193 12305342 -32602228 + (CCCTG)n Simple_repeat Simple_repeat 1 136 0 314 139 0 57 chr21 12305366 12305488 -32602082 + (CCCTG)n Simple_repeat Simple_repeat 2 116 0 962 144 47 56 chr21 12305519 12305734 -32601836 - L1MB7 LINE L1 -87 6097 5885 2189 121 3 3 chr21 12305818 12306115 -32601455 - AluSp SINE Alu -16 297 1 1232 141 0 5 chr21 12306148 12306333 -32601237 + AluSg/x SINE Alu 129 312 0 397 354 49 21 chr21 12306494 12306923 -32600647 - L1MC4a LINE L1 -1902 5906 5466 867 135 26 47 chr21 12306939 12307132 -32600438 + L1MA9 LINE L1 6124 6312 0 1562 245 75 9 chr21 12307367 12307832 -32599738 + L1ME1 LINE L1 5662 6157 -9 39778 68 9 4 chr21 12307851 12313264 -32594306 - L1P2 LINE L1 -711 5443 13 2428 133 65 99 chr21 12313542 12314159 -32593411 - L1MB3 LINE L1 -1 6182 5587 22 0 0 0 chr21 12314236 12314258 -32593312 + AT_rich Low_complexity Low_complexity 1 22 0 2277 122 0 0 chr21 12314402 12314706 -32592864 - AluSg SINE Alu -6 304 1 8008 226 55 23 chr21 12314843 12316773 -32590797 - L1MC4a LINE L1 -847 5299 3267 1953 154 10 3 chr21 12316773 12317066 -32590504 - AluSx SINE Alu -17 295 1 8008 226 55 23 chr21 12317066 12317696 -32589874 - L1MC4a LINE L1 -2879 3267 2658 2018 131 7 13 chr21 12318026 12318331 -32589239 + AluSx SINE Alu 6 308 -4 23 78 0 0 chr21 12320144 12320195 -32587375 + AT_rich Low_complexity Low_complexity 1 51 0 2156 107 24 3 chr21 12320389 12320680 -32586890 + AluSq SINE Alu 1 297 -16 414 351 44 37 chr21 12320722 12321018 -32586552 + L1ME3A LINE L1 5528 5825 -296 2052 133 3 23 chr21 12321020 12321329 -32586241 + AluSg1 SINE Alu 1 303 -6 2342 74 0 0 chr21 12321342 12321656 -32585914 + AluY SINE Alu 2 315 0 1372 154 67 29 chr21 12323571 12323883 -32583687 - MER33 DNA MER1_type 0 324 1 1159 204 14 14 chr21 12323892 12324112 -32583458 - MER58A DNA MER1_type -1 223 4 537 252 34 19 chr21 12324313 12324519 -32583051 + L1M4 LINE L1 2869 3077 -3069 1799 115 0 0 chr21 12324526 12324760 -32582810 + AluSq SINE Alu 1 234 -79 251 316 73 15 chr21 12325481 12325617 -32581953 + MIR SINE MIR 22 165 -97 267 114 0 0 chr21 12328396 12328440 -32579130 + (TCCC)n Simple_repeat Simple_repeat 1 44 0 2353 101 3 0 chr21 12334071 12334367 -32573203 + AluSg SINE Alu 1 297 -13 2004 132 3 10 chr21 12334378 12334682 -32572888 + AluSx SINE Alu 1 302 -10 1097 82 0 0 chr21 12335288 12335422 -32572148 - AluSq/x SINE Alu -178 134 1 2133 135 6 25 chr21 12335424 12335742 -32571828 - AluSx SINE Alu 0 312 1 249 290 16 0 chr21 12335948 12336010 -32571560 + L2 LINE L2 3251 3313 0 1579 212 10 7 chr21 12336289 12336596 -32570974 - AluJo SINE Alu -4 308 1 22 0 0 0 chr21 12336596 12336618 -32570952 + AT_rich Low_complexity Low_complexity 1 22 0 2077 104 76 0 chr21 12338489 12338777 -32568793 - AluSg SINE Alu 0 310 1 29 70 0 0 chr21 12339190 12339247 -32568323 + AT_rich Low_complexity Low_complexity 1 57 0 381 313 130 10 chr21 12341567 12341775 -32565795 + L1ME3A LINE L1 5936 6168 -2 191 242 136 30 chr21 12342010 12342076 -32565494 + L2 LINE L2 3191 3263 -9 544 283 31 25 chr21 12342252 12342411 -32565159 - MER5B DNA MER1_type -18 160 1 941 277 131 12 chr21 12343093 12343512 -32564058 + MLT1H LTR MaLR 7 475 -74 512 239 135 5 chr21 12344169 12344318 -32563252 + MER33 DNA MER1_type 60 249 -2336 1954 131 58 0 chr21 12344318 12344609 -32562961 - AluSg SINE Alu 0 310 3 512 239 135 5 chr21 12344609 12344681 -32562889 + MER33 DNA MER1_type 249 310 -14 1406 253 25 13 chr21 12345602 12345998 -32561572 - MER93a LTR ERV1 0 402 2 639 257 125 53 chr21 12347106 12347538 -32560032 - MER92B LTR ERV1 -120 516 54 932 233 82 9 chr21 12347593 12347910 -32559660 + MER21B LTR ERV1 417 756 -107 1415 217 80 32 chr21 12348657 12348825 -32558745 + MER67C LTR ERV1 1 160 -550 402 21 0 0 chr21 12348825 12348872 -32558698 + (TG)n Simple_repeat Simple_repeat 2 48 0 1415 217 80 32 chr21 12348872 12349253 -32558317 + MER67C LTR ERV1 160 657 -53 2520 54 0 19 chr21 12349253 12349569 -32558001 - AluY SINE Alu -1 310 1 1415 217 80 32 chr21 12349569 12349621 -32557949 + MER67C LTR ERV1 657 705 -5 2155 107 0 3 chr21 12351589 12351888 -32555682 + AluSq SINE Alu 1 298 -15 254 250 15 98 chr21 12352119 12352251 -32555319 + MIR SINE MIR 133 253 -9 349 255 170 7 chr21 12352694 12352835 -32554735 + MER5A DNA MER1_type 19 182 -7 669 344 100 34 chr21 12354426 12354978 -32552592 - L3 LINE CR1 -3 1574 987 2050 121 59 9 chr21 12355148 12355486 -32552084 - THE1A LTR MaLR 0 355 1 239 289 74 16 chr21 12356220 12356341 -32551229 - MER117 DNA MER1_type -53 144 17 603 274 6 24 chr21 12357323 12357491 -32550079 - LTR33 LTR ERVL -356 165 1 4423 92 3 2 chr21 12358521 12359127 -32548443 - L1PA14 LINE L1 -3 6158 5552 1055 351 11 15 chr21 12359578 12360039 -32547531 + L1MEc LINE L1 139 597 -5799 4403 254 67 37 chr21 12360056 12361223 -32546347 + L1MEc LINE L1 663 1793 -4422 2317 135 113 2 chr21 12361223 12361667 -32545903 + LTR54B LTR ERV1 4 496 -2 4403 254 67 37 chr21 12361667 12362056 -32545514 + L1MEc LINE L1 1793 2169 -4046 1999 103 17 17 chr21 12362056 12362347 -32545223 + AluSq SINE Alu 1 291 -22 4403 254 67 37 chr21 12362347 12363950 -32543620 + L1MEc LINE L1 2169 3916 -2299 1196 253 81 16 chr21 12363941 12364637 -32542933 + L1MCa LINE L1 1 707 -5338 * 1023 125 7 0 chr21 12364640 12364792 -32542778 + AluSp SINE Alu 138 290 -23 362 97 48 0 chr21 12364792 12364854 -32542716 + (GAGTG)n Simple_repeat Simple_repeat 3 67 0 1433 212 48 74 chr21 12364857 12365209 -32542361 + L1MCa LINE L1 701 1055 -5093 260 119 24 0 chr21 12365209 12365251 -32542319 - U2 snRNA snRNA -145 43 1 1433 212 48 74 chr21 12365251 12365483 -32542087 + L1MCa LINE L1 1055 1291 -4857 1428 182 42 20 chr21 12365489 12366018 -32541552 + L1MCa LINE L1 1507 2146 -4418 2098 222 45 32 chr21 12366060 12366596 -32540974 - LTR55 LTR ERV -5 543 1 244 182 55 0 chr21 12366635 12366690 -32540880 - L1MCa LINE L1 -4282 2144 2087 * 1514 245 30 9 chr21 12366687 12367375 -32540195 + L1MCa LINE L1 2148 2857 -3569 2364 266 45 22 chr21 12367377 12368177 -32539393 + L1MCa LINE L1 3337 4154 -2272 719 215 100 67 chr21 12368255 12368585 -32538985 + L1MCa LINE L1 4984 5324 -1102 1377 207 14 11 chr21 12368588 12368868 -32538702 + AluJo SINE Alu 6 286 -26 981 210 37 29 chr21 12368883 12369155 -32538415 + L1MCa LINE L1 5312 5585 -841 605 232 81 32 chr21 12369197 12369443 -32538127 + L1ME1 LINE L1 4581 4838 -1308 * 2277 227 82 24 chr21 12369442 12370346 -32537224 + L1ME1 LINE L1 5176 6295 -39 2273 108 22 41 chr21 12370468 12370883 -32536687 - L1PA13 LINE L1 -3 6160 5754 1066 107 0 7 chr21 12370891 12371041 -32536529 - AluSq/x SINE Alu -164 149 1 486 108 0 0 chr21 12371042 12371116 -32536454 - L1PA13 LINE L1 -1815 4331 4258 941 116 0 0 chr21 12371116 12371254 -32536316 + AluSg/x SINE Alu 174 311 -1 5266 154 18 5 chr21 12371256 12372149 -32535421 - L1PA13 LINE L1 -1887 4259 3355 1293 88 0 88 chr21 12372155 12372370 -32535200 - AluSx SINE Alu -116 196 1 366 207 0 67 chr21 12372417 12372596 -32534974 + (CAGGG)n Simple_repeat Simple_repeat 1 167 0 219 128 0 90 chr21 12372603 12372681 -32534889 + (CCCTG)n Simple_repeat Simple_repeat 1 71 0 882 113 0 8 chr21 12372736 12372869 -32534701 - AluSq/x SINE Alu -175 137 6 444 225 22 84 chr21 12372873 12373051 -32534519 + MIR SINE MIR 96 262 0 398 238 47 23 chr21 12373172 12373344 -32534226 + (CCCTAG)n Simple_repeat Simple_repeat 1 176 0 307 283 64 3 chr21 12373429 12373737 -32533833 + (CTAGGG)n Simple_repeat Simple_repeat 1 326 0 435 163 0 87 chr21 12373786 12373982 -32533588 + (CAGGG)n Simple_repeat Simple_repeat 2 180 0 307 277 44 20 chr21 12374000 12374428 -32533142 + (CTAGGG)n Simple_repeat Simple_repeat 1 438 0 302 291 29 29 chr21 12374463 12374635 -32532935 + (CTAGGG)n Simple_repeat Simple_repeat 1 172 0 254 139 0 58 chr21 12374641 12374727 -32532843 + (CAGGG)n Simple_repeat Simple_repeat 1 81 0 380 277 50 0 chr21 12374941 12375100 -32532470 + (CTAGGG)n Simple_repeat Simple_repeat 6 172 0 * 385 182 5 88 chr21 12375010 12375237 -32532333 + (CAGGG)n Simple_repeat Simple_repeat 1 208 0 434 277 52 0 chr21 12375294 12375589 -32531981 + (CTAGGG)n Simple_repeat Simple_repeat 1 310 0 249 206 5 87 chr21 12375617 12375801 -32531769 + (CAGGG)n Simple_repeat Simple_repeat 2 170 0 189 178 0 59 chr21 12375814 12375915 -32531655 + (CAGGG)n Simple_repeat Simple_repeat 1 95 0 247 192 27 0 chr21 12375943 12376016 -32531554 + (CTAGGG)n Simple_repeat Simple_repeat 2 76 0 316 178 0 96 chr21 12376065 12376262 -32531308 + (CAGGG)n Simple_repeat Simple_repeat 3 180 0 182 57 0 94 chr21 12376377 12376430 -32531140 + (CAGGC)n Simple_repeat Simple_repeat 5 52 0 211 159 8 56 chr21 12376511 12376637 -32530933 + (CAGGG)n Simple_repeat Simple_repeat 1 120 0 227 169 13 97 chr21 12376646 12376800 -32530770 + (CAGGC)n Simple_repeat Simple_repeat 3 143 0 221 182 0 53 chr21 12376839 12376971 -32530599 + (CAGGG)n Simple_repeat Simple_repeat 2 126 0 666 285 69 51 chr21 12377772 12378161 -32529409 - HSREP522 Satellite telomeric -152 396 1 5316 209 58 11 chr21 12378292 12379595 -32527975 + L1 LINE L1 2785 4148 -1998 894 180 16 57 chr21 12379595 12379840 -32527730 - HSREP522 Satellite telomeric 0 504 270 1038 249 81 70 chr21 12380227 12381443 -32526127 + HSREP522 Satellite telomeric 1 1229 -120 22 35 0 0 chr21 12383229 12383258 -32524312 + AT_rich Low_complexity Low_complexity 1 29 0 405 0 0 0 chr21 12383296 12383341 -32524229 + (TA)n Simple_repeat Simple_repeat 1 45 0 2067 125 3 0 chr21 12383347 12383658 -32523912 - AluSx SINE Alu 0 312 1 243 205 54 18 chr21 12383683 12383795 -32523775 + (TA)n Simple_repeat Simple_repeat 2 117 0 240 313 42 7 chr21 12383997 12384141 -32523429 + L1ME LINE L1 5528 5676 -445 27 0 0 0 chr21 12384745 12384772 -32522798 + AT_rich Low_complexity Low_complexity 1 27 0 216 254 18 0 chr21 12384849 12384904 -32522666 - L2 LINE L2 -1 3271 3216 21 0 0 0 chr21 12385238 12385259 -32522311 + AT_rich Low_complexity Low_complexity 1 21 0 384 239 78 42 chr21 12385364 12385506 -32522064 - MER104 DNA Tc2 0 180 34 1657 172 10 0 chr21 12385603 12385893 -32521677 + AluJo SINE Alu 1 293 -19 535 248 187 46 chr21 12385897 12386117 -32521453 - MIR SINE MIR -11 251 4 204 40 0 0 chr21 12387339 12387364 -32520206 + (TAA)n Simple_repeat Simple_repeat 3 27 0 200 242 11 0 chr21 12387553 12387648 -32519922 + CT-rich Low_complexity Low_complexity 2 97 0 247 300 0 0 chr21 12387712 12387792 -32519778 + (TG)n Simple_repeat Simple_repeat 1 80 0 516 186 34 8 chr21 12388536 12388654 -32518916 + 5S rRNA rRNA 1 121 0 1330 155 53 9 chr21 12389191 12392145 -32515425 - GSATX Satellite centromeric -20 3082 1 205 245 0 21 chr21 12394585 12394679 -32512891 + GA-rich Low_complexity Low_complexity 3 94 0 397 308 155 34 chr21 12394696 12394989 -32512581 + L1M4c LINE L1 910 1255 -5129 1227 209 7 47 chr21 12394989 12395285 -32512285 + AluJb SINE Alu 5 288 -24 397 308 155 34 chr21 12395285 12395345 -32512225 + L1M4c LINE L1 1255 1306 -5078 1812 106 75 17 chr21 12395386 12395679 -32511891 + AluSg SINE Alu 1 310 0 305 255 131 46 chr21 12395704 12395857 -32511713 + L1M4c LINE L1 3317 3482 -2900 1709 143 34 0 chr21 12396842 12397136 -32510434 + AluSx SINE Alu 1 304 -8 1469 160 4 0 chr21 12397137 12397368 -32510202 + PABL_A LTR ERV1 429 660 0 261 226 0 0 chr21 12397373 12397426 -32510144 + AluJ/monomer SINE Alu 248 300 -2 840 132 0 101 chr21 12397434 12397623 -32509947 + AluJo SINE Alu 120 289 -23 1147 243 74 13 chr21 12397756 12398065 -32509505 + ERVL LTR ERVL 3261 3588 -2176 263 175 18 12 chr21 12398075 12398132 -32509438 + AluSx SINE Alu 2 41 -260 4613 67 3 2 chr21 12398132 12398711 -32508859 - LTR14C LTR ERVK 0 587 8 1566 167 4 0 chr21 12398711 12398974 -32508596 + AluSx SINE Alu 29 292 -20 473 136 0 0 chr21 12399019 12399085 -32508485 + AluJ/FLAM SINE Alu 1 66 -246 1477 151 125 11 chr21 12399171 12399188 -32508382 - AluSp SINE Alu 0 303 289 288 0 0 0 chr21 12399188 12399220 -32508350 + (TAG)n Simple_repeat Simple_repeat 1 32 0 1477 151 125 11 chr21 12399220 12399474 -32508096 - AluSp SINE Alu -14 289 1 1863 107 37 4 chr21 12399476 12399771 -32507799 - AluSg SINE Alu 0 305 2 767 171 7 7 chr21 12400524 12400664 -32506906 + AluJb SINE Alu 2 141 -171 31 44 0 0 chr21 12400681 12400726 -32506844 + AT_rich Low_complexity Low_complexity 1 45 0 1226 161 141 24 chr21 12400804 12401059 -32506511 - AluJb SINE Alu -17 285 1 323 276 31 16 chr21 12401454 12401581 -32505989 + LTR54B LTR ERV1 18 146 -352 2167 119 3 0 chr21 12402930 12403233 -32504337 + AluSq SINE Alu 3 306 -7 1924 112 15 8 chr21 12403252 12403519 -32504051 - AluSx SINE Alu -43 269 1 2151 123 3 0 chr21 12403641 12403942 -32503628 - AluSq SINE Alu -11 302 1 1946 154 7 0 chr21 12404804 12405097 -32502473 - AluSx SINE Alu -17 295 1 2048 113 7 0 chr21 12405448 12405730 -32501840 + AluSx SINE Alu 3 286 -26 621 100 53 0 chr21 12405748 12405918 -32501652 + (TA)n Simple_repeat Simple_repeat 1 179 0 31 0 0 0 chr21 12405918 12405949 -32501621 + AT_rich Low_complexity Low_complexity 1 31 0 199 116 27 75 chr21 12405949 12406096 -32501474 + (TATAA)n Simple_repeat Simple_repeat 5 144 0 30 27 0 0 chr21 12406096 12406133 -32501437 + AT_rich Low_complexity Low_complexity 1 37 0 201 74 0 0 chr21 12406422 12406449 -32501121 + (GAAAA)n Simple_repeat Simple_repeat 4 30 0 3573 170 32 15 chr21 12406456 12406729 -32500841 - L1 LINE L1 -3243 3605 3338 2104 139 7 0 chr21 12406729 12407030 -32500540 - AluSx SINE Alu -9 303 1 3573 170 32 15 chr21 12407030 12407806 -32499764 - L1 LINE L1 -3510 3338 2536 24 53 0 0 chr21 12408637 12408675 -32498895 + AT_rich Low_complexity Low_complexity 1 38 0 196 254 17 0 chr21 12408866 12408925 -32498645 + L2 LINE L2 3213 3272 0 26 50 0 0 chr21 12409097 12409137 -32498433 + AT_rich Low_complexity Low_complexity 1 40 0 1098 112 117 29 chr21 12409734 12409939 -32497631 - LTR12 LTR ERV1 0 714 492 326 266 9 0 chr21 12409941 12410050 -32497520 - LTR30 LTR ERV1 -69 653 544 6093 100 20 25 chr21 12410050 12411200 -32496370 - pTR5 LTR ERV1 -413 2025 743 258 237 21 82 chr21 12411220 12411317 -32496253 + MIR3 SINE MIR 110 200 -8 1872 137 3 18 chr21 12411435 12411768 -32495802 + AluSx SINE Alu 1 329 0 1069 182 0 0 chr21 12411901 12412077 -32495493 - AluJ SINE Alu -5 307 132 1696 168 23 16 chr21 12412097 12412407 -32495163 + AluJo SINE Alu 1 312 0 189 0 0 0 chr21 12412576 12412597 -32494973 + (TAAAA)n Simple_repeat Simple_repeat 2 22 0 1152 131 0 6 chr21 12412597 12412772 -32494798 + FRAM SINE Alu 1 174 -2 195 114 0 0 chr21 12412962 12412997 -32494573 + (T)n Simple_repeat Simple_repeat 1 35 0 188 0 74 0 chr21 12413708 12413735 -32493835 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 254 264 174 39 chr21 12414300 12414455 -32493115 - MER5A DNA MER1_type 0 189 14 211 322 217 0 chr21 12414566 12414746 -32492824 - L3 LINE CR1 -167 1410 1192 844 136 8 15 chr21 12414746 12414878 -32492692 - AluJ SINE Alu -171 141 11 2223 136 0 0 chr21 12414937 12415246 -32492324 - AluSq SINE Alu -2 311 3 258 245 0 0 chr21 12415486 12415535 -32492035 + MIR SINE MIR 3 51 -211 956 134 29 10 chr21 12415571 12416067 -32491503 + (CACCAT)n Simple_repeat Simple_repeat 1 505 0 461 305 104 0 chr21 12416073 12416227 -32491343 - MIR SINE MIR -49 213 44 277 290 86 54 chr21 12416255 12416441 -32491129 - L3 LINE CR1 -731 846 655 608 253 138 18 chr21 12417757 12417804 -32489766 + MIR SINE MIR 11 51 -211 2004 162 0 0 chr21 12417804 12418101 -32489469 + AluJo SINE Alu 2 298 -14 608 253 138 18 chr21 12418101 12418278 -32489292 + MIR SINE MIR 51 262 0 254 183 37 85 chr21 12418300 12418382 -32489188 - MIR SINE MIR -8 254 177 2120 134 0 0 chr21 12418414 12418704 -32488866 - AluSx SINE Alu -17 295 6 1965 162 0 10 chr21 12418826 12419134 -32488436 - AluJb SINE Alu -7 305 1 819 294 29 8 chr21 12419192 12419430 -32488140 - MIR SINE MIR -2 260 18 1962 112 60 0 chr21 12420053 12420338 -32487232 + AluSx SINE Alu 1 302 -10 1467 172 8 77 chr21 12420707 12421078 -32486492 - MER4A LTR ERV1 0 664 261 630 122 10 10 chr21 12421078 12421176 -32486394 - MER4A LTR ERV1 -566 98 1 1862 143 4 0 chr21 12421248 12421528 -32486042 + AluSq SINE Alu 1 281 -32 195 100 0 0 chr21 12421528 12421558 -32486012 + (TAAA)n Simple_repeat Simple_repeat 1 30 0 3689 223 37 34 chr21 12421559 12422226 -32485344 - L1M1 LINE L1 -5277 2288 1616 3998 117 25 9 chr21 12422226 12422781 -32484789 + LTR6A LTR ERV1 1 564 0 3689 223 37 34 chr21 12422781 12422946 -32484624 - L1M1 LINE L1 -5949 1616 1453 1793 164 0 16 chr21 12423085 12423389 -32484181 - AluSx SINE Alu -13 299 1 2194 111 0 43 chr21 12423540 12423864 -32483706 + AluSg SINE Alu 1 310 0 405 0 0 0 chr21 12423870 12423915 -32483655 + (TA)n Simple_repeat Simple_repeat 1 45 0 242 165 71 12 chr21 12423940 12424025 -32483545 + (TA)n Simple_repeat Simple_repeat 1 90 0 279 0 0 0 chr21 12424409 12424440 -32483130 + (TG)n Simple_repeat Simple_repeat 2 32 0 1914 182 2 69 chr21 12424779 12425055 -32482515 + MLT1B LTR MaLR 11 253 -137 1967 129 92 29 chr21 12425055 12425404 -32482166 - THE1C LTR MaLR -4 371 1 1914 182 2 69 chr21 12425404 12425534 -32482036 + MLT1B LTR MaLR 253 390 0 556 288 155 9 chr21 12425764 12425983 -32481587 + MIR SINE MIR 8 258 -4 291 354 0 0 chr21 12426058 12426140 -32481430 - MIR SINE MIR -134 128 47 27 49 0 0 chr21 12427780 12427821 -32479749 + AT_rich Low_complexity Low_complexity 1 41 0 2643 163 37 16 chr21 12428020 12428506 -32479064 - L1MA8 LINE L1 -1 6290 5795 198 95 14 68 chr21 12428544 12428618 -32478952 + (TA)n Simple_repeat Simple_repeat 1 70 0 5753 158 9 23 chr21 12428619 12429511 -32478059 - L1MA8 LINE L1 -502 5789 4925 1042 209 5 27 chr21 12429511 12429731 -32477839 - L1PB4 LINE L1 0 6156 5942 5753 158 9 23 chr21 12429731 12430306 -32477264 - L1MA8 LINE L1 -1366 4925 4343 21 57 0 0 chr21 12430443 12430478 -32477092 + AT_rich Low_complexity Low_complexity 1 35 0 267 180 0 0 chr21 12430478 12430528 -32477042 - L1MA8 LINE L1 -1812 4334 4285 1896 267 88 27 chr21 12430578 12431361 -32476209 + L1ME1 LINE L1 516 1346 -5050 1728 113 57 60 chr21 12431361 12431571 -32475999 - THE1C LTR MaLR 0 375 165 2064 115 28 3 chr21 12431571 12431859 -32475711 + AluSc SINE Alu 1 295 -14 1728 113 57 60 chr21 12431859 12431983 -32475587 - THE1C LTR MaLR -210 165 42 431 293 56 37 chr21 12431983 12432253 -32475317 + HERV15 LTR ERV1 1207 1481 -7254 249 91 0 0 chr21 12432384 12432417 -32475153 - THE1C LTR MaLR -342 33 1 311 322 30 21 chr21 12432418 12432654 -32474916 + L1ME1 LINE L1 1343 1580 -4816 550 238 69 78 chr21 12432775 12433185 -32474385 + LTR15 LTR ERV1 112 479 -14 24668 269 36 41 chr21 12433198 12441974 -32465596 + HERV15 LTR ERV1 1 8731 -4 348 243 106 78 chr21 12442104 12442462 -32465108 + LTR15 LTR ERV1 112 479 -14 1459 83 29 19 chr21 12442466 12442671 -32464899 + AluSp SINE Alu 89 295 -18 1131 213 57 59 chr21 12442671 12443205 -32464365 + L1ME1 LINE L1 1588 2122 -4274 237 108 0 0 chr21 12443205 12443242 -32464328 + (TTTTG)n Simple_repeat Simple_repeat 1 37 0 1782 121 11 11 chr21 12443247 12443520 -32464050 - AluSc SINE Alu -36 273 1 1131 213 57 59 chr21 12443520 12443607 -32463963 + L1ME1 LINE L1 2126 2302 -4094 * 2159 245 68 34 chr21 12443601 12444124 -32463446 + L1ME1 LINE L1 5461 6018 -217 1915 199 21 0 chr21 12444124 12444460 -32463110 - MER2 DNA MER2_type 0 344 2 2159 245 68 34 chr21 12444460 12444666 -32462904 + L1ME1 LINE L1 6018 6215 -20 352 243 153 40 chr21 12445464 12445666 -32461904 + L1ME LINE L1 5592 5816 -305 188 344 146 0 chr21 12446088 12446184 -32461386 + MIR SINE MIR 79 188 -74 23 33 0 0 chr21 12447237 12447267 -32460303 + AT_rich Low_complexity Low_complexity 1 30 0 24 0 0 0 chr21 12447464 12447488 -32460082 + AT_rich Low_complexity Low_complexity 1 24 0 937 170 0 0 chr21 12447857 12448004 -32459566 + AluSg/x SINE Alu 135 281 -31 9053 213 39 30 chr21 12448436 12448604 -32458966 + L1P5 LINE L1 1067 1232 -5626 2111 101 0 0 chr21 12448604 12448881 -32458689 - AluY SINE Alu 0 311 35 9053 213 39 30 chr21 12448881 12449686 -32457884 + L1P5 LINE L1 1232 2028 -4830 204 97 0 0 chr21 12449686 12449717 -32457853 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 9053 213 39 30 chr21 12449717 12451641 -32455929 + L1P5 LINE L1 2028 3933 -2925 1468 192 7 18 chr21 12451641 12451917 -32455653 + AluJo SINE Alu 33 305 -7 9053 213 39 30 chr21 12451917 12452903 -32454667 + L1P5 LINE L1 3933 6145 -713 14674 178 58 20 chr21 12452906 12455754 -32451816 + L1M1 LINE L1 15 2968 -4597 534 186 0 24 chr21 12455755 12455879 -32451691 + L1PB4 LINE L1 6034 6154 -2 25 0 0 0 chr21 12456187 12456212 -32451358 + AT_rich Low_complexity Low_complexity 1 25 0 21 0 0 0 chr21 12456264 12456285 -32451285 + AT_rich Low_complexity Low_complexity 1 21 0 336 344 38 0 chr21 12456331 12456491 -32451079 - L1ME LINE L1 -303 5818 5653 904 286 26 0 chr21 12456500 12456734 -32450836 - MIR SINE MIR -5 257 18 1516 283 49 32 chr21 12457131 12458009 -32449561 - L2 LINE L2 0 3313 2424 36 40 0 0 chr21 12458036 12458086 -32449484 + AT_rich Low_complexity Low_complexity 1 50 0 1294 50 12 0 chr21 12459824 12459985 -32447585 + L1PA7 LINE L1 5988 6150 -4 214 210 42 28 chr21 12460099 12460151 -32447419 + (TA)n Simple_repeat Simple_repeat 2 52 -94 1763 171 3 3 chr21 12460151 12460449 -32447121 - AluJb SINE Alu -14 298 1 214 210 42 28 chr21 12460449 12460539 -32447031 + (TA)n Simple_repeat Simple_repeat 52 146 0 25 31 0 0 chr21 12461132 12461164 -32446406 + AT_rich Low_complexity Low_complexity 1 32 0 21 0 0 0 chr21 12462601 12462622 -32444948 + AT_rich Low_complexity Low_complexity 1 21 0 485 237 15 15 chr21 12462949 12463084 -32444486 - MIR SINE MIR -54 208 74 423 216 0 0 chr21 12463236 12463347 -32444223 + GA-rich Low_complexity Low_complexity 6 116 0 800 321 75 67 chr21 12463766 12464438 -32443132 + L2 LINE L2 2201 2890 -423 2243 115 7 0 chr21 12464438 12464742 -32442828 - AluSg SINE Alu -4 306 1 800 321 75 67 chr21 12464742 12465168 -32442402 + L2 LINE L2 2890 3311 -2 304 293 75 20 chr21 12465181 12465328 -32442242 + L2 LINE L2 3159 3313 0 202 371 43 63 chr21 12465327 12465629 -32441941 + L2 LINE L2 2374 2669 -645 * 307 302 68 47 chr21 12465755 12465990 -32441580 + L1ME4a LINE L1 5866 6105 -16 1686 170 23 45 chr21 12466088 12466441 -32441129 + MER7A DNA MER2_type 4 346 0 1920 156 30 24 chr21 12466723 12467096 -32440474 - THE1C LTR MaLR 0 375 1 5141 120 8 5 chr21 12467096 12467848 -32439722 - THE1C-int LTR MaLR 0 1580 827 754 126 55 16 chr21 12467853 12467980 -32439590 - THE1C LTR MaLR -243 132 1 1549 108 0 9 chr21 12469737 12469997 -32437573 - AluSc SINE Alu 0 326 69 208 325 25 12 chr21 12470060 12470140 -32437430 + MIR3 SINE MIR 127 207 -1 218 217 0 0 chr21 12470406 12470452 -32437118 + (TA)n Simple_repeat Simple_repeat 1 46 0 360 298 99 42 chr21 12471170 12471502 -32436068 + L1MD2 LINE L1 45 395 -5724 22 0 0 0 chr21 12471771 12471793 -32435777 + AT_rich Low_complexity Low_complexity 1 22 0 21 36 0 0 chr21 12472210 12472238 -32435332 + AT_rich Low_complexity Low_complexity 1 28 0 3188 231 89 42 chr21 12472489 12472801 -32434769 + L1MD2 LINE L1 572 868 -5261 229 171 0 0 chr21 12472801 12472836 -32434734 + tRNA-Arg-AGA tRNA tRNA 1 35 -41 3188 231 89 42 chr21 12472836 12473786 -32433784 + L1MD2 LINE L1 868 1929 -4200 1783 221 18 72 chr21 12473793 12474308 -32433262 + MLT1D LTR MaLR 19 505 0 2396 261 32 128 chr21 12474309 12475706 -32431864 + MLT1D-int LTR MaLR 2 1264 -107 5255 254 49 50 chr21 12475799 12478927 -32428643 + L1MD2 LINE L1 2645 5771 -571 316 123 74 12 chr21 12478979 12479141 -32428429 + (TA)n Simple_repeat Simple_repeat 1 172 0 482 113 62 0 chr21 12479153 12479313 -32428257 + (TA)n Simple_repeat Simple_repeat 2 171 0 29 47 0 0 chr21 12479313 12479356 -32428214 + AT_rich Low_complexity Low_complexity 1 43 0 366 125 79 0 chr21 12479361 12479618 -32427952 + (TA)n Simple_repeat Simple_repeat 1 277 0 435 187 37 22 chr21 12479618 12479719 -32427851 - L1MD1 LINE L1 -280 5884 5780 228 83 28 0 chr21 12479783 12479819 -32427751 + L1P5 LINE L1 5783 5819 -332 * 850 160 22 33 chr21 12479789 12479970 -32427600 + L1MD2 LINE L1 5790 5968 -274 1144 248 50 24 chr21 12479974 12480313 -32427257 + L1MD2 LINE L1 5994 6341 -1 28 48 0 0 chr21 12480702 12480744 -32426826 + AT_rich Low_complexity Low_complexity 1 42 0 380 207 47 30 chr21 12481591 12481760 -32425810 + (TA)n Simple_repeat Simple_repeat 2 173 0 22 70 0 0 chr21 12481762 12481805 -32425765 + AT_rich Low_complexity Low_complexity 1 43 0 27 0 0 0 chr21 12483787 12483814 -32423756 + AT_rich Low_complexity Low_complexity 1 27 0 43683 40 1 2 chr21 12484385 12490542 -32417028 + L1PA3 LINE L1 1 6152 -3 482 315 72 37 chr21 12490552 12490938 -32416632 - L2 LINE L2 -74 3239 2766 252 0 0 0 chr21 12492206 12492234 -32415336 + (TTTTA)n Simple_repeat Simple_repeat 2 29 0 2002 107 4 4 chr21 12492237 12492517 -32415053 - AluSg SINE Alu -30 280 1 987 278 93 10 chr21 12492543 12493137 -32414433 - L1ME3A LINE L1 -200 6468 5768 2476 44 7 0 chr21 12493562 12493860 -32413710 + AluY SINE Alu 1 300 -11 36 0 0 0 chr21 12493870 12493906 -32413664 + AT_rich Low_complexity Low_complexity 1 36 0 277 296 96 23 chr21 12493955 12494350 -32413220 - L1ME3A LINE L1 -2983 3661 3238 936 70 0 0 chr21 12494454 12494582 -32412988 - L1PA5 LINE L1 0 6154 6027 411 291 191 12 chr21 12494582 12495195 -32412375 - L1MEd LINE L1 -3385 3259 2577 378 289 52 69 chr21 12495795 12496203 -32411367 - L1MEd LINE L1 -4832 1763 1310 274 77 0 0 chr21 12496283 12496322 -32411248 + MADE1 DNA Mariner 42 80 0 327 289 96 54 chr21 12496325 12496585 -32410985 - L1MEd LINE L1 -5286 1348 1078 3709 117 50 33 chr21 12497244 12498215 -32409355 + MER11A LTR ERVK 1 1071 0 610 281 134 5 chr21 12498611 12498835 -32408735 + MIR SINE MIR 3 255 -7 1463 0 0 6 chr21 12500221 12500395 -32407175 + L1P LINE L1 4334 4506 -1640 8173 31 0 0 chr21 12500395 12502152 -32405418 + L1PA4 LINE L1 4382 6152 -3 22 0 0 0 chr21 12502152 12502174 -32405396 + AT_rich Low_complexity Low_complexity 1 22 0 2062 110 3 20 chr21 12503261 12503561 -32404009 + AluSx SINE Alu 1 295 -17 24 0 0 0 chr21 12503601 12503625 -32403945 + AT_rich Low_complexity Low_complexity 1 24 0 24 77 0 0 chr21 12503913 12503965 -32403605 + AT_rich Low_complexity Low_complexity 1 52 0 204 336 36 0 chr21 12504019 12504129 -32403441 - MIR SINE MIR -1 261 148 226 270 95 58 chr21 12504167 12504273 -32403297 - MIR SINE MIR -98 164 50 2156 153 0 21 chr21 12504273 12504646 -32402924 + MLT1A1 LTR MaLR 1 365 0 226 270 95 58 chr21 12504646 12504676 -32402894 - MIR SINE MIR -212 50 23 486 316 70 9 chr21 12505406 12505621 -32401949 - MIR SINE MIR 0 262 35 2148 102 0 0 chr21 12505971 12506256 -32401314 + AluSx SINE Alu 21 305 -7 27 73 0 0 chr21 12506429 12506484 -32401086 + AT_rich Low_complexity Low_complexity 1 55 0 187 234 21 0 chr21 12507200 12507247 -32400323 - L2 LINE L2 -9 3263 3216 34 42 0 0 chr21 12507528 12507576 -32399994 + AT_rich Low_complexity Low_complexity 1 48 0 214 196 20 0 chr21 12507806 12507857 -32399713 + (TCTA)n Simple_repeat Simple_repeat 3 54 0 241 308 23 23 chr21 12508038 12508171 -32399399 + L1ME LINE L1 5529 5661 -460 2495 50 0 0 chr21 12508762 12509064 -32398506 + AluYa8 SINE Alu 1 302 -8 22 35 0 0 chr21 12509169 12509198 -32398372 + AT_rich Low_complexity Low_complexity 1 29 0 25 0 0 0 chr21 12509737 12509762 -32397808 + AT_rich Low_complexity Low_complexity 1 25 0 2097 121 3 0 chr21 12509852 12510149 -32397421 + AluSx SINE Alu 5 302 -10 2760 236 116 20 chr21 12510250 12511311 -32396259 + L1M4c LINE L1 1506 2624 -869 4221 184 25 38 chr21 12511316 12512509 -32395061 + L1MB3 LINE L1 5015 6183 0 811 319 55 34 chr21 12512560 12513083 -32394487 + L1ME1 LINE L1 71 604 -5792 2053 258 93 37 chr21 12513230 12514211 -32393359 + L1ME1 LINE L1 5125 6175 -60 1522 201 10 7 chr21 12514211 12514510 -32393060 + AluJo SINE Alu 1 300 -12 2053 258 93 37 chr21 12514510 12514571 -32392999 + L1ME1 LINE L1 6175 6231 -4 231 36 0 0 chr21 12514693 12514721 -32392849 + (CA)n Simple_repeat Simple_repeat 2 29 0 41 48 0 0 chr21 12514807 12514869 -32392701 + AT_rich Low_complexity Low_complexity 1 62 0 19509 184 19 16 chr21 12515022 12519101 -32388469 + L1PA11 LINE L1 1220 5309 -837 13571 32 0 18 chr21 12519101 12521528 -32386042 + L1PA4 LINE L1 3736 6153 -2 1898 124 14 0 chr21 12521529 12521812 -32385758 + L1PA11 LINE L1 5769 6055 -119 201 167 15 30 chr21 12521990 12522056 -32385514 + A-rich Low_complexity Low_complexity 5 69 0 345 323 62 16 chr21 12522673 12522865 -32384705 + L1ME4a LINE L1 5254 5454 -2354 405 226 85 67 chr21 12523868 12524032 -32383538 + MIR3 SINE MIR 33 199 -9 219 295 24 0 chr21 12524429 12524503 -32383067 - MIR SINE MIR -62 146 78 1352 128 56 12 chr21 12524859 12525108 -32382462 + L1MA5A LINE L1 6030 6289 -8 222 282 153 40 chr21 12525288 12525412 -32382158 - MER5A DNA MER1_type -45 144 7 183 296 185 12 chr21 12525588 12525669 -32381901 - MIR SINE MIR -148 114 20 276 256 89 0 chr21 12525905 12525995 -32381575 + MER5A DNA MER1_type 9 106 -83 301 333 0 40 chr21 12525996 12526122 -32381448 + MIR3 SINE MIR 60 180 -28 1193 199 23 23 chr21 12526163 12526429 -32381141 + MER58B DNA MER1_type 59 324 -17 1766 163 7 0 chr21 12526441 12526730 -32380840 + AluJb SINE Alu 6 296 -16 180 152 0 0 chr21 12528277 12528310 -32379260 + (CA)n Simple_repeat Simple_repeat 2 34 0 21 57 0 0 chr21 12528426 12528461 -32379109 + AT_rich Low_complexity Low_complexity 1 35 0 22 35 0 0 chr21 12529089 12529118 -32378452 + AT_rich Low_complexity Low_complexity 1 29 0 22 35 0 0 chr21 12529243 12529272 -32378298 + AT_rich Low_complexity Low_complexity 1 29 0 206 32 32 0 chr21 12530085 12530116 -32377454 + (ATG)n Simple_repeat Simple_repeat 2 33 0 225 180 100 0 chr21 12530118 12530168 -32377402 - MIR SINE MIR -10 252 198 439 284 91 105 chr21 12530196 12530631 -32376939 + L1ME4a LINE L1 5530 5957 -164 183 42 0 0 chr21 12530631 12530655 -32376915 + (TA)n Simple_repeat Simple_repeat 2 25 0 439 284 91 105 chr21 12530655 12530799 -32376771 + L1ME4a LINE L1 5957 6101 -20 435 38 0 0 chr21 12530952 12531005 -32376565 + (TTCC)n Simple_repeat Simple_repeat 2 54 0 244 282 26 13 chr21 12531016 12531094 -32376476 - L2 LINE L2 -1 3312 3234 213 311 0 16 chr21 12531116 12531177 -32376393 - L2 LINE L2 -4 3309 3250 2267 99 3 0 chr21 12531355 12531649 -32375921 + AluSq SINE Alu 1 295 -18 247 234 16 0 chr21 12531688 12531752 -32375818 + (TA)n Simple_repeat Simple_repeat 1 65 0 266 330 61 9 chr21 12532669 12532784 -32374786 - MIR3 SINE MIR -48 160 40 24 53 0 0 chr21 12533738 12533776 -32373794 + GC_rich Low_complexity Low_complexity 1 38 0 333 344 51 0 chr21 12534750 12534948 -32372622 + MIR SINE MIR 19 229 -33 22 0 0 0 chr21 12535631 12535653 -32371917 + AT_rich Low_complexity Low_complexity 1 22 0 24 0 0 0 chr21 12536559 12536583 -32370987 + AT_rich Low_complexity Low_complexity 1 24 0 351 22 22 0 chr21 12538288 12538334 -32369236 + MADE1 DNA Mariner 1 47 -33 201 343 76 35 chr21 12539072 12539244 -32368326 - MIR SINE MIR -46 216 38 250 226 0 40 chr21 12539860 12539984 -32367586 + (TA)n Simple_repeat Simple_repeat 2 120 0 214 306 0 20 chr21 12540300 12540349 -32367221 + MIR SINE MIR 34 81 -181 273 254 186 34 chr21 12540446 12540564 -32367006 + MIR SINE MIR 119 254 -8 1378 201 51 0 chr21 12541048 12541302 -32366268 - MLT1C LTR MaLR 0 467 201 1146 195 54 128 chr21 12541310 12541772 -32365798 + MSTC LTR MaLR 1 428 0 1165 149 10 5 chr21 12541772 12541966 -32365604 - MLT1C LTR MaLR -272 195 1 1587 158 56 11 chr21 12542506 12542790 -32364780 + AluSx SINE Alu 1 297 -15 340 316 51 0 chr21 12543111 12543228 -32364342 - MIR SINE MIR -69 139 17 272 130 0 87 chr21 12543591 12543660 -32363910 + MER3 DNA MER1_type 112 122 -87 * 1585 174 74 14 chr21 12543658 12544003 -32363567 + MER3 DNA MER1_type 2235 2605 -19 2169 120 0 3 chr21 12544003 12544312 -32363258 + AluSx SINE Alu 1 308 -4 1585 174 74 14 chr21 12544312 12544333 -32363237 + MER3 DNA MER1_type 2605 2623 -1 26 30 0 0 chr21 12545989 12546022 -32361548 + AT_rich Low_complexity Low_complexity 1 33 0 1800 141 25 40 chr21 12546156 12546510 -32361060 + THE1C LTR MaLR 1 349 -26 10016 104 14 61 chr21 12546525 12548177 -32359393 + THE1C-int LTR MaLR 6 1580 0 2049 127 29 35 chr21 12548177 12548554 -32359016 + THE1C LTR MaLR 1 375 0 215 365 115 13 chr21 12549598 12549754 -32357816 + L2 LINE L2 2271 2442 -872 283 396 67 7 chr21 12551470 12551619 -32355951 - HAL1 LINE L1 -2076 431 274 2270 295 86 19 chr21 12551674 12552727 -32354843 - L2 LINE L2 -55 3258 1918 1845 147 7 3 chr21 12552727 12553019 -32354551 + AluSx SINE Alu 1 293 -19 2270 295 86 19 chr21 12553019 12553250 -32354320 - L2 LINE L2 -1395 1918 1704 21 36 0 0 chr21 12553684 12553712 -32353858 + AT_rich Low_complexity Low_complexity 1 28 0 243 0 0 0 chr21 12555492 12555519 -32352051 + (TGAA)n Simple_repeat Simple_repeat 1 27 0 254 254 46 77 chr21 12557179 12557309 -32350261 - L1M2 LINE L1 -715 5576 5451 440 320 99 29 chr21 12557374 12557790 -32349780 - L1M4 LINE L1 -747 5399 4955 1795 189 22 38 chr21 12558931 12559302 -32348268 + MLT1A1 LTR MaLR 1 365 0 2737 144 31 54 chr21 12559850 12560406 -32347164 + L1MA7 LINE L1 5720 6262 -29 1000 305 58 13 chr21 12560483 12560877 -32346693 + MLT2F LTR ERVL 5 416 -247 342 0 0 0 chr21 12560891 12560929 -32346641 + (TG)n Simple_repeat Simple_repeat 2 39 0 471 116 0 0 chr21 12561664 12561733 -32345837 - LTR1B LTR ERV1 0 826 758 1081 300 48 31 chr21 12562182 12562595 -32344975 + MLT1H1 LTR MaLR 9 428 -127 2343 290 95 15 chr21 12563835 12564643 -32342927 + L2 LINE L2 20 892 -2422 2527 133 41 7 chr21 12565252 12565666 -32341904 - MSTA LTR MaLR 0 428 1 4802 100 115 167 chr21 12566636 12567966 -32339604 + MER11A LTR ERVK 1 1261 -5 1468 105 38 0 chr21 12568463 12568672 -32338898 - AluSg/x SINE Alu -13 299 83 1893 143 20 31 chr21 12570294 12570644 -32336926 - MER7A DNA MER2_type 0 346 3 450 0 0 0 chr21 12571736 12571786 -32335784 + (TG)n Simple_repeat Simple_repeat 2 51 0 250 207 17 17 chr21 12572203 12572261 -32335309 + (TATATG)n Simple_repeat Simple_repeat 6 63 0 929 174 69 21 chr21 12572728 12573063 -32334507 - L1MC/D LINE L1 -745 5401 5140 4558 113 12 1 chr21 12573070 12573754 -32333816 - L1PA11 LINE L1 -3 6171 5481 602 159 0 0 chr21 12573756 12573863 -32333707 - L1M4 LINE L1 -1293 4853 4747 2537 28 0 0 chr21 12574166 12574451 -32333119 - AluY SINE Alu -19 292 8 476 73 0 12 chr21 12574663 12574745 -32332825 - L1PB1 LINE L1 -1 6150 6070 296 226 28 23 chr21 12574764 12574941 -32332629 + (TA)n Simple_repeat Simple_repeat 2 179 0 260 201 0 0 chr21 12574975 12575035 -32332535 + MLT2C2 LTR ERVL 417 463 -1 611 239 0 0 chr21 12575127 12575257 -32332313 - LTR16A LTR ERVL -5 445 316 553 307 42 17 chr21 12575289 12575527 -32332043 - LTR16A LTR ERVL -205 245 2 2103 111 6 22 chr21 12575582 12575898 -32331672 - AluSq SINE Alu -2 311 1 1113 160 0 57 chr21 12576304 12576516 -32331054 + AluJb SINE Alu 110 309 -3 594 286 17 36 chr21 12576527 12576939 -32330631 + L1M4 LINE L1 2215 2618 -3528 726 226 13 19 chr21 12577092 12577251 -32330319 + MER58A DNA MER1_type 1 158 0 868 248 22 13 chr21 12577254 12577480 -32330090 + ERVL LTR ERVL 4862 5089 -675 506 284 120 27 chr21 12578149 12578374 -32329196 + MIR SINE MIR 7 252 -10 23 33 0 0 chr21 12578715 12578745 -32328825 + AT_rich Low_complexity Low_complexity 1 30 0 1437 180 41 35 chr21 12578957 12579284 -32328286 + MER61B LTR ERV1 1 423 -2 247 301 140 5 chr21 12580069 12580255 -32327315 + L1ME LINE L1 5604 5814 -307 512 224 33 20 chr21 12581223 12581375 -32326195 - HsTC2 DNA Tc2 -9 1889 1736 302 259 12 12 chr21 12581412 12581493 -32326077 - HsTC2 DNA Tc2 -560 1338 1258 610 214 62 142 chr21 12581543 12582127 -32325443 + MER34 LTR ERV1 1 537 -5 541 292 57 50 chr21 12582134 12582415 -32325155 + L2 LINE L2 3031 3313 0 198 337 31 10 chr21 12582728 12582826 -32324744 + MIR SINE MIR 163 262 0 235 350 140 46 chr21 12583167 12583287 -32324283 + L2 LINE L2 2932 3039 -274 2176 126 103 5 chr21 12583287 12583676 -32323894 + MSTA LTR MaLR 1 427 -1 235 350 140 46 chr21 12583676 12583904 -32323666 + L2 LINE L2 3039 3313 0 190 320 96 51 chr21 12584129 12584326 -32323244 + MIR3 SINE MIR 2 207 -1 217 284 23 57 chr21 12585367 12585455 -32322115 - MIR SINE MIR -131 131 47 445 212 76 0 chr21 12585640 12585700 -32321870 - L1ME4a LINE L1 -1 6120 6066 225 0 0 0 chr21 12585700 12585725 -32321845 + (TA)n Simple_repeat Simple_repeat 2 26 0 445 212 76 0 chr21 12585725 12585782 -32321788 - L1ME4a LINE L1 -55 6066 5994 23 33 0 0 chr21 12585850 12585880 -32321690 + AT_rich Low_complexity Low_complexity 1 30 0 2158 209 56 47 chr21 12585880 12586580 -32320990 + Charlie1 DNA MER1_type 2052 2757 -4 2248 104 3 3 chr21 12586600 12586907 -32320663 + AluSc SINE Alu 1 307 -2 612 276 85 41 chr21 12587014 12587260 -32320310 - MIR SINE MIR 0 262 6 808 238 47 114 chr21 12587470 12587546 -32320024 + MLT1A1 LTR MaLR 6 86 -279 2233 115 0 0 chr21 12587546 12587851 -32319719 - AluSg SINE Alu -5 305 1 808 238 47 114 chr21 12587851 12588160 -32319410 + MLT1A1 LTR MaLR 86 365 0 284 158 18 0 chr21 12588623 12588680 -32318890 + (TA)n Simple_repeat Simple_repeat 1 58 0 321 150 33 0 chr21 12588681 12588741 -32318829 - Charlie1 DNA MER1_type -619 2142 2081 21 0 0 0 chr21 12592583 12592604 -32314966 + AT_rich Low_complexity Low_complexity 1 21 0 848 173 0 19 chr21 12593015 12593217 -32314353 + AluJb SINE Alu 2 291 -21 214 316 38 110 chr21 12593423 12593660 -32313910 - L2 LINE L2 0 3272 3053 346 323 65 62 chr21 12593826 12594086 -32313484 + MIR SINE MIR 1 261 -1 2028 139 0 0 chr21 12594090 12594385 -32313185 + AluSx SINE Alu 3 297 -15 980 246 73 26 chr21 12595531 12595894 -32311676 - MLT1H LTR MaLR -167 388 1 188 67 33 0 chr21 12596772 12596802 -32310768 + (CATATA)n Simple_repeat Simple_repeat 5 35 0 299 130 19 0 chr21 12596886 12596940 -32310630 + (TATATG)n Simple_repeat Simple_repeat 2 56 0 27 29 0 0 chr21 12597192 12597226 -32310344 + AT_rich Low_complexity Low_complexity 1 34 0 606 335 62 56 chr21 12598518 12598605 -32308965 - L2 LINE L2 -908 2406 2321 6854 106 5 9 chr21 12598605 12599578 -32307992 - LTR5 LTR ERVK 0 969 1 606 335 62 56 chr21 12599578 12600025 -32307545 - L2 LINE L2 -993 2321 1869 2281 83 0 10 chr21 12600322 12600635 -32306935 + AluY SINE Alu 1 310 -1 24 0 0 0 chr21 12600690 12600714 -32306856 + AT_rich Low_complexity Low_complexity 1 24 0 1976 62 0 12 chr21 12601554 12601823 -32305747 - AluY SINE Alu 0 306 41 2527 105 22 8 chr21 12602065 12602435 -32305135 - THE1C LTR MaLR 0 375 1 476 319 113 60 chr21 12603629 12603768 -32303802 - MLT1L LTR MaLR -18 597 467 1982 147 0 0 chr21 12603768 12604067 -32303503 + AluSx SINE Alu 1 299 -13 476 319 113 60 chr21 12604067 12604494 -32303076 - MLT1L LTR MaLR -148 467 1 264 281 86 14 chr21 12604644 12604783 -32302787 - MLT1H LTR MaLR -341 208 60 2067 155 120 73 chr21 12606447 12606937 -32300633 - MLT2B2 LTR ERVL -2 513 1 552 297 30 6 chr21 12606945 12607110 -32300460 - MIR SINE MIR -70 192 24 210 91 0 0 chr21 12607179 12607212 -32300358 + (CA)n Simple_repeat Simple_repeat 2 34 0 1691 286 60 17 chr21 12607579 12608408 -32299162 - L2 LINE L2 -4 3309 2444 216 0 0 0 chr21 12609122 12609146 -32298424 + (TG)n Simple_repeat Simple_repeat 2 25 0 204 40 0 0 chr21 12609601 12609626 -32297944 + (TC)n Simple_repeat Simple_repeat 2 26 0 216 0 0 0 chr21 12610200 12610224 -32297346 + (TGAA)n Simple_repeat Simple_repeat 1 24 0 1915 153 13 0 chr21 12610829 12611142 -32296428 + L1MC1 LINE L1 5997 6313 -20 1940 173 155 14 chr21 12611156 12611743 -32295827 - MER39 LTR ERV1 0 707 1 1884 161 38 16 chr21 12612150 12612517 -32295053 - THE1C LTR MaLR 0 375 1 2246 124 4 29 chr21 12612751 12612890 -32294680 + L1PB4 LINE L1 5658 5799 -357 444 118 0 0 chr21 12612890 12612958 -32294612 + (CA)n Simple_repeat Simple_repeat 2 69 0 2246 124 4 29 chr21 12612958 12613269 -32294301 + L1PB4 LINE L1 5799 6156 0 919 183 35 25 chr21 12613344 12613541 -32294029 + MER3 DNA MER1_type 2 200 -9 606 60 0 12 chr21 12614732 12614902 -32292668 - AluY SINE Alu 0 311 210 242 32 0 0 chr21 12614902 12614933 -32292637 - AluY SINE Alu -268 32 2 1537 200 16 16 chr21 12615316 12615681 -32291889 - L1MB1 LINE L1 -1 6167 5803 21 0 0 0 chr21 12616021 12616042 -32291528 + AT_rich Low_complexity Low_complexity 1 21 0 26 0 0 0 chr21 12616421 12616447 -32291123 + AT_rich Low_complexity Low_complexity 1 26 0 2665 101 11 0 chr21 12616473 12616850 -32290720 - L1PA11 LINE L1 0 6174 5794 642 324 130 8 chr21 12617476 12617846 -32289724 - L2 LINE L2 0 3313 2899 189 269 82 112 chr21 12617917 12618051 -32289519 - L2 LINE L2 -2 3270 3141 2320 97 7 0 chr21 12618754 12619064 -32288506 + AluSp SINE Alu 1 312 -1 21 71 0 0 chr21 12619234 12619276 -32288294 + AT_rich Low_complexity Low_complexity 1 42 0 21 82 0 0 chr21 12619465 12619514 -32288056 + AT_rich Low_complexity Low_complexity 1 49 0 439 372 33 0 chr21 12620328 12620511 -32287059 - MIR SINE MIR -1 261 73 1747 208 14 54 chr21 12620513 12620940 -32286630 - MLT2D LTR ERVL 0 414 5 2146 103 3 0 chr21 12620943 12621277 -32286293 + AluSp SINE Alu 1 335 0 260 70 23 0 chr21 12621788 12621831 -32285739 + (TG)n Simple_repeat Simple_repeat 1 44 0 368 275 162 18 chr21 12622411 12622578 -32284992 - MIR SINE MIR -6 256 66 211 136 68 0 chr21 12623568 12623612 -32283958 + T-rich Low_complexity Low_complexity 5 51 0 4025 161 80 16 chr21 12624898 12625724 -32281846 + L1MA9 LINE L1 5434 6312 0 22 0 0 0 chr21 12627804 12627826 -32279744 + AT_rich Low_complexity Low_complexity 1 22 0 370 383 82 26 chr21 12627841 12628110 -32279460 - L2 LINE L2 -9 3263 2980 414 272 19 38 chr21 12629733 12629891 -32277679 + LTR16A LTR ERVL 220 374 -76 2234 140 20 43 chr21 12629923 12630322 -32277248 + MLT1B LTR MaLR 1 390 0 33 43 0 0 chr21 12630456 12630503 -32277067 + AT_rich Low_complexity Low_complexity 1 47 0 22 0 0 0 chr21 12630889 12630911 -32276659 + AT_rich Low_complexity Low_complexity 1 22 0 193 339 104 9 chr21 12632161 12632276 -32275294 - L2 LINE L2 0 3272 3147 270 344 82 8 chr21 12633027 12633149 -32274421 + L2 LINE L2 3134 3264 -8 29 0 0 0 chr21 12634349 12634378 -32273192 + AT_rich Low_complexity Low_complexity 1 29 0 23 33 0 0 chr21 12634655 12634685 -32272885 + AT_rich Low_complexity Low_complexity 1 30 0 23 0 0 0 chr21 12635633 12635656 -32271914 + AT_rich Low_complexity Low_complexity 1 23 0 259 257 168 44 chr21 12636503 12636616 -32270954 + L2 LINE L2 3146 3272 0 974 335 79 14 chr21 12637498 12637990 -32269580 + MER115 DNA AcHobo 170 693 0 2755 189 22 15 chr21 12638254 12638800 -32268770 - MER44D DNA MER2_type 0 605 1 2571 34 0 3 chr21 12639307 12639602 -32267968 - AluY SINE Alu -17 294 1 198 317 156 60 chr21 12639689 12639856 -32267714 - MIR SINE MIR -69 193 11 252 321 89 21 chr21 12639968 12640158 -32267412 + MIR SINE MIR 60 262 0 295 294 54 0 chr21 12640322 12640414 -32267156 - MIR3 SINE MIR -9 199 103 442 260 44 55 chr21 12640531 12640712 -32266858 + MIR SINE MIR 77 255 -7 787 116 18 24 chr21 12641688 12641852 -32265718 + GA-rich Low_complexity Low_complexity 4 166 0 2167 122 3 0 chr21 12642057 12642353 -32265217 + AluSx SINE Alu 1 297 -15 2418 274 62 26 chr21 12642637 12643767 -32263803 + L2 LINE L2 2138 3313 0 197 325 92 17 chr21 12643782 12643902 -32263668 - L3b LINE CR1 -26 1557 1429 22 70 0 0 chr21 12644208 12644251 -32263319 + AT_rich Low_complexity Low_complexity 1 43 0 607 219 8 8 chr21 12644278 12644462 -32263108 + FLAM_A SINE Alu 1 184 0 345 100 0 0 chr21 12644465 12644515 -32263055 + (GGGGA)n Simple_repeat Simple_repeat 4 53 0 28744 126 16 70 chr21 12644519 12649973 -32257597 + L1P LINE L1 1 5161 -985 234 0 0 0 chr21 12649980 12650006 -32257564 + (TAAA)n Simple_repeat Simple_repeat 2 27 0 783 136 28 11 chr21 12650007 12650183 -32257387 + GA-rich Low_complexity Low_complexity 1 179 0 1897 155 0 0 chr21 12650548 12650826 -32256744 + AluSx SINE Alu 1 278 -34 221 130 14 58 chr21 12652416 12652485 -32255085 + (TATAA)n Simple_repeat Simple_repeat 5 70 0 256 148 33 0 chr21 12652597 12652658 -32254912 + CT-rich Low_complexity Low_complexity 5 67 0 736 291 157 31 chr21 12652893 12653420 -32254150 - L2 LINE L2 -1001 2313 1695 210 71 0 0 chr21 12653420 12653448 -32254122 + (TTG)n Simple_repeat Simple_repeat 2 29 0 736 291 157 31 chr21 12653448 12653538 -32254032 - L2 LINE L2 -1619 1695 1618 380 275 22 0 chr21 12654039 12654130 -32253440 + MER81 DNA DNA 20 112 -2 497 352 80 46 chr21 12654219 12654781 -32252789 - L2 LINE L2 -2425 889 309 300 338 181 5 chr21 12655117 12655333 -32252237 - MIR SINE MIR -6 256 3 284 254 56 0 chr21 12655884 12655955 -32251615 - MIR SINE MIR -71 191 117 363 265 0 12 chr21 12657100 12657183 -32250387 + MIR3 SINE MIR 113 194 -14 356 218 0 0 chr21 12657467 12657545 -32250025 + MER116 DNA Mariner 3 80 0 397 253 0 0 chr21 12657939 12658022 -32249548 - MER103 DNA DNA -78 88 6 26 30 0 0 chr21 12659227 12659260 -32248310 + AT_rich Low_complexity Low_complexity 1 33 0 257 254 151 30 chr21 12660631 12660863 -32246707 + HAL1 LINE L1 995 1254 -1253 2377 90 0 0 chr21 12660902 12661212 -32246358 + AluY SINE Alu 1 310 -1 207 0 0 0 chr21 12661692 12661715 -32245855 + (TTTTG)n Simple_repeat Simple_repeat 2 24 0 253 340 62 19 chr21 12661825 12661987 -32245583 - MLT1K LTR MaLR -46 542 374 555 269 79 47 chr21 12662221 12662474 -32245096 - MLT1I LTR MaLR -148 261 1 2317 80 3 0 chr21 12663283 12663572 -32243998 + AluSp SINE Alu 1 290 -23 278 105 0 0 chr21 12663572 12663610 -32243960 + (GGAA)n Simple_repeat Simple_repeat 1 38 0 593 141 39 19 chr21 12663610 12663766 -32243804 + GA-rich Low_complexity Low_complexity 1 159 0 1245 206 35 16 chr21 12663924 12664240 -32243330 - MER33 DNA MER1_type -1 323 2 1818 138 46 3 chr21 12664801 12665083 -32242487 + AluSg SINE Alu 1 294 -16 1064 246 145 22 chr21 12665921 12666328 -32241242 - LTR16B LTR ERVL -7 457 1 21 0 0 0 chr21 12667290 12667311 -32240259 + AT_rich Low_complexity Low_complexity 1 21 0 267 294 118 8 chr21 12667942 12668061 -32239509 + MIR3 SINE MIR 30 161 -47 416 279 27 9 chr21 12668093 12668204 -32239366 + MER5A DNA MER1_type 77 189 0 466 317 81 12 chr21 12668476 12668722 -32238848 + Charlie8 DNA MER1_type 19 281 -2136 27 29 0 0 chr21 12668794 12668828 -32238742 + AT_rich Low_complexity Low_complexity 1 34 0 1881 144 7 17 chr21 12669018 12669317 -32238253 - AluSx SINE Alu -16 296 1 1698 197 32 91 chr21 12669351 12669442 -32238128 - MLT1C LTR MaLR -3 464 369 186 43 0 0 chr21 12669442 12669465 -32238105 + (TTTTA)n Simple_repeat Simple_repeat 2 24 0 1421 156 3 122 chr21 12669467 12669662 -32237908 - AluJo SINE Alu -19 283 139 230 0 33 0 chr21 12669662 12669692 -32237878 + (TA)n Simple_repeat Simple_repeat 2 32 0 1421 156 3 122 chr21 12669692 12669817 -32237753 - AluJo SINE Alu -163 139 1 1698 197 32 91 chr21 12669817 12670215 -32237355 - MLT1C LTR MaLR -99 368 1 22 35 0 0 chr21 12670642 12670671 -32236899 + AT_rich Low_complexity Low_complexity 1 29 0 751 221 178 0 chr21 12671912 12672170 -32235400 - MER46C DNA MER2_type -11 327 24 23 54 0 0 chr21 12672622 12672659 -32234911 + AT_rich Low_complexity Low_complexity 1 37 0 1424 200 70 0 chr21 12672820 12672916 -32234654 + AluJo SINE Alu 22 110 -202 615 14 0 0 chr21 12672916 12672988 -32234582 + (GAAA)n Simple_repeat Simple_repeat 2 73 0 1424 200 70 0 chr21 12672988 12673161 -32234409 + AluJo SINE Alu 110 310 -2 24 77 0 0 chr21 12673329 12673381 -32234189 + AT_rich Low_complexity Low_complexity 1 52 0 21 82 0 0 chr21 12674243 12674292 -32233278 + AT_rich Low_complexity Low_complexity 1 49 0 653 293 155 6 chr21 12674429 12674746 -32232824 + L2 LINE L2 1718 2081 -1233 494 263 230 20 chr21 12674804 12675104 -32232466 + L2 LINE L2 2951 3313 0 354 315 27 27 chr21 12675783 12675967 -32231603 + L1ME4a LINE L1 5750 5933 -188 2219 112 0 0 chr21 12677511 12677806 -32229764 + AluSx SINE Alu 3 297 -15 593 271 79 113 chr21 12679052 12679581 -32227989 + L2 LINE L2 2794 3312 -1 24 0 0 0 chr21 12679670 12679694 -32227876 + AT_rich Low_complexity Low_complexity 1 24 0 2250 78 0 0 chr21 12680583 12680908 -32226662 - AluSq SINE Alu 0 325 1 245 350 48 10 chr21 12681172 12681275 -32226295 + L2 LINE L2 3203 3309 -4 1348 199 16 51 chr21 12681327 12681638 -32225932 + AluJo SINE Alu 1 300 -12 24 77 0 0 chr21 12681735 12681787 -32225783 + AT_rich Low_complexity Low_complexity 1 52 0 1048 233 75 49 chr21 12682397 12682783 -32224787 + L1ME3A LINE L1 5751 6146 -24 21 57 0 0 chr21 12682874 12682909 -32224661 + AT_rich Low_complexity Low_complexity 1 35 0 247 281 74 37 chr21 12683182 12683317 -32224253 - MIR SINE MIR -15 247 108 378 149 0 15 chr21 12683538 12683605 -32223965 - MER116 DNA Mariner 0 80 15 677 312 80 4 chr21 12683744 12683981 -32223589 + MIR SINE MIR 8 262 0 2126 133 0 0 chr21 12684050 12684343 -32223227 - AluSx SINE Alu -17 295 3 1844 112 89 0 chr21 12684351 12684620 -32222950 - AluY SINE Alu -14 297 5 506 209 9 9 chr21 12685620 12685735 -32221835 - L1MEc LINE L1 -6246 150 36 522 297 79 55 chr21 12685846 12686263 -32221307 - MLT1J LTR MaLR -84 427 1 226 135 58 0 chr21 12686454 12686506 -32221064 + (CATATA)n Simple_repeat Simple_repeat 4 58 0 1961 131 7 0 chr21 12686823 12687105 -32220465 + AluSx SINE Alu 1 284 -28 642 271 62 36 chr21 12687413 12687638 -32219932 + MIR SINE MIR 12 242 -20 709 235 47 127 chr21 12687640 12688232 -32219338 - MLT1F LTR MaLR -8 559 1 220 209 0 0 chr21 12691979 12692022 -32215548 + (TATG)n Simple_repeat Simple_repeat 2 44 0 803 164 0 0 chr21 12692114 12692236 -32215334 + FLAM_C SINE Alu 2 123 -20 25 0 0 0 chr21 12692242 12692267 -32215303 + AT_rich Low_complexity Low_complexity 1 25 0 21 0 0 0 chr21 12692330 12692351 -32215219 + AT_rich Low_complexity Low_complexity 1 21 0 1071 68 0 0 chr21 12693165 12693297 -32214273 - AluY SINE Alu -179 132 1 2117 50 0 8 chr21 12693840 12694101 -32213469 + AluY SINE Alu 46 304 -7 566 323 41 41 chr21 12694332 12694623 -32212947 + L2 LINE L2 2861 3151 -162 1083 239 5 5 chr21 12694630 12694843 -32212727 + MER20 DNA MER1_type 1 213 -6 192 295 0 39 chr21 12694852 12694930 -32212640 + L2 LINE L2 3158 3232 -81 1988 160 48 34 chr21 12695196 12695738 -32211832 + MLT2A2 LTR ERVL 3 554 0 224 228 0 0 chr21 12696095 12696152 -32211418 + (TAAA)n Simple_repeat Simple_repeat 2 58 0 2223 120 0 0 chr21 12696284 12696583 -32210987 - AluSg SINE Alu -11 299 1 1462 108 25 0 chr21 12697489 12697693 -32209877 + AluSg/x SINE Alu 91 299 -13 425 297 90 33 chr21 12697970 12698182 -32209388 + L1ME LINE L1 5263 5486 -635 370 300 136 0 chr21 12698185 12698465 -32209105 + L1ME LINE L1 5507 5824 -297 369 326 105 11 chr21 12698577 12698758 -32208812 + MLT1L LTR MaLR 350 547 -68 216 238 298 0 chr21 12699903 12699987 -32207583 + L2 LINE L2 3196 3304 -9 198 118 0 0 chr21 12701576 12701610 -32205960 + (CAAAAA)n Simple_repeat Simple_repeat 2 35 0 247 239 57 57 chr21 12702293 12702381 -32205189 + MLT1L LTR MaLR 1 88 -527 1307 235 107 28 chr21 12702438 12702989 -32204581 - MLT1E2 LTR MaLR 0 626 3 240 186 29 14 chr21 12703037 12703107 -32204463 - MLT1E2-int LTR MaLR -64 1307 1237 479 242 42 124 chr21 12703305 12703636 -32203934 - L1MC5 LINE L1 -974 6987 6684 617 237 0 0 chr21 12703856 12703991 -32203579 + FLAM_A SINE Alu 8 142 0 24 53 0 0 chr21 12704120 12704158 -32203412 + AT_rich Low_complexity Low_complexity 1 38 0 258 297 52 19 chr21 12704455 12704558 -32203012 + L1ME1 LINE L1 5350 5461 -660 1923 219 19 17 chr21 12704558 12705023 -32202547 + MLT1C LTR MaLR 1 466 -1 258 297 52 19 chr21 12705023 12705074 -32202496 + L1ME1 LINE L1 5461 5509 -612 241 313 27 9 chr21 12705213 12705325 -32202245 + L1ME LINE L1 100 213 -6183 1389 251 61 14 chr21 12705518 12706280 -32201290 + L1ME LINE L1 5027 5838 -395 1190 261 80 27 chr21 12706312 12706725 -32200845 + L1ME1 LINE L1 5661 6095 -71 300 218 35 0 chr21 12706765 12706855 -32200715 + L1ME1 LINE L1 6084 6184 0 1220 244 147 10 chr21 12707256 12707662 -32199908 - L1ME LINE L1 -3218 2862 2370 324 0 0 0 chr21 12707662 12707698 -32199872 + (TG)n Simple_repeat Simple_repeat 1 36 0 1220 244 147 10 chr21 12707698 12707803 -32199767 - L1ME LINE L1 -3710 2370 2281 456 206 113 0 chr21 12707827 12707924 -32199646 - MER96 DNA MER1_type? -41 134 27 1011 268 91 84 chr21 12707990 12708108 -32199462 - L1ME LINE L1 -3935 2326 2210 1182 176 14 9 chr21 12708108 12708324 -32199246 + L1PB4 LINE L1 5928 6144 -12 1011 268 91 84 chr21 12708324 12708786 -32198784 - L1ME LINE L1 -4051 2210 1753 2101 65 76 7 chr21 12708786 12709077 -32198493 - AluY SINE Alu 0 311 1 1011 268 91 84 chr21 12709077 12710055 -32197515 - L1ME LINE L1 -4508 1753 721 229 391 30 0 chr21 12710800 12710933 -32196637 + MER117 DNA MER1_type 45 181 -16 309 328 60 0 chr21 12711050 12711166 -32196404 + L2 LINE L2 3191 3313 0 814 230 16 109 chr21 12712034 12712264 -32195306 - MLT1B LTR MaLR 0 390 217 189 94 0 0 chr21 12712264 12712296 -32195274 + (TG)n Simple_repeat Simple_repeat 2 33 0 814 230 16 109 chr21 12712296 12712495 -32195075 - MLT1B LTR MaLR -173 217 1 208 137 98 0 chr21 12713645 12713696 -32193874 + CT-rich Low_complexity Low_complexity 1 56 0 265 302 0 23 chr21 12713723 12713809 -32193761 - L2 LINE L2 -55 3217 3134 407 293 64 21 chr21 12714475 12714663 -32192907 - L1MC4a LINE L1 -1898 5910 5715 38 51 0 0 chr21 12714995 12715054 -32192516 + AT_rich Low_complexity Low_complexity 1 59 0 948 292 118 13 chr21 12715481 12715854 -32191716 - MLT2F LTR ERVL -233 430 19 612 290 80 17 chr21 12715915 12716215 -32191355 - L1ME3A LINE L1 -321 5849 5531 2688 124 70 0 chr21 12716218 12716687 -32190883 - L1MA4 LINE L1 -6 6294 5793 2912 129 13 6 chr21 12716687 12717204 -32190366 + L1M1 LINE L1 5203 5723 -580 546 300 125 19 chr21 12717192 12718013 -32189557 - L1ME3A LINE L1 -614 5548 4640 * 230 307 147 32 chr21 12719100 12719318 -32188252 + MIR SINE MIR 20 262 0 1431 121 84 115 chr21 12720886 12721208 -32186362 - AluJb SINE Alu 0 312 1 39 38 0 0 chr21 12721804 12721857 -32185713 + AT_rich Low_complexity Low_complexity 1 53 0 691 186 0 0 chr21 12721857 12721975 -32185595 - AluJb SINE Alu -194 118 1 23 33 0 0 chr21 12722092 12722122 -32185448 + AT_rich Low_complexity Low_complexity 1 30 0 349 329 132 0 chr21 12722485 12722652 -32184918 - MIR SINE MIR 0 262 74 4791 148 13 37 chr21 12723487 12723602 -32183968 - L1MA3 LINE L1 0 6305 6189 2076 128 103 30 chr21 12723602 12723999 -32183571 + MSTB LTR MaLR 1 426 0 4791 148 13 37 chr21 12723999 12725161 -32182409 - L1MA3 LINE L1 -116 6189 5084 856 131 103 40 chr21 12725161 12725274 -32182296 + MSTA LTR MaLR 243 347 -81 185 0 40 0 chr21 12725274 12725299 -32182271 + (TTTA)n Simple_repeat Simple_repeat 3 28 0 7186 10 0 13 chr21 12725299 12726121 -32181449 - L1PA3 LINE L1 -7 6148 5328 856 131 103 40 chr21 12726121 12726181 -32181389 + MSTA LTR MaLR 346 428 0 4931 158 26 2 chr21 12726213 12727144 -32180426 - L1MA3 LINE L1 -1071 5075 4123 5512 141 13 4 chr21 12727326 12727463 -32180107 - L1PA15 LINE L1 0 6165 6031 192 40 0 0 chr21 12727463 12727488 -32180082 + (TTTTG)n Simple_repeat Simple_repeat 2 26 0 5512 141 13 4 chr21 12727488 12729017 -32178553 - L1PA15 LINE L1 -134 6031 4486 2886 201 36 8 chr21 12729020 12729627 -32177943 - L1PA15 LINE L1 -1752 4394 3771 24 0 0 0 chr21 12731254 12731278 -32176292 + AT_rich Low_complexity Low_complexity 1 24 0 1997 147 0 0 chr21 12731285 12731571 -32175999 - AluSx SINE Alu -26 286 1 1302 194 24 76 chr21 12732007 12732348 -32175222 + MLT1B LTR MaLR 12 334 -56 512 335 70 68 chr21 12732383 12732909 -32174661 + L1MEd LINE L1 80 606 -5513 315 258 114 30 chr21 12732990 12733157 -32174413 + L1MEd LINE L1 746 926 -5193 24 0 0 0 chr21 12733239 12733263 -32174307 + AT_rich Low_complexity Low_complexity 1 24 0 348 180 0 0 chr21 12733267 12733328 -32174242 + MSTB2 LTR MaLR 397 457 0 667 224 57 29 chr21 12733328 12733538 -32174032 + L1ME3 LINE L1 5939 6154 -8 3489 270 75 97 chr21 12733598 12736074 -32171496 + L1MA9 LINE L1 402 2767 -4799 1041 185 0 0 chr21 12736076 12736254 -32171316 + MER46A DNA MER2_type 1 178 -58 334 118 20 0 chr21 12736324 12736375 -32171195 + MER46A DNA MER2_type 185 236 0 1508 237 29 102 chr21 12736388 12737038 -32170532 + L1MEd LINE L1 932 1534 -4597 19742 169 19 21 chr21 12737057 12742800 -32164770 + L1MA1 LINE L1 22 5749 -1972 1575 183 7 33 chr21 12742800 12742981 -32164589 - AluJb SINE Alu -14 298 127 437 0 19 0 chr21 12742981 12743034 -32164536 + (TTTTA)n Simple_repeat Simple_repeat 2 55 0 1575 183 7 33 chr21 12743034 12743158 -32164412 - AluJb SINE Alu -185 127 1 19742 169 19 21 chr21 12743158 12745124 -32162446 + L1MA1 LINE L1 5749 7717 -4 9513 197 64 97 chr21 12745128 12746318 -32161252 + L1MA9 LINE L1 3052 4280 -3451 1823 188 35 14 chr21 12746318 12746685 -32160885 - THE1C LTR MaLR 0 375 1 9513 197 64 97 chr21 12746685 12746887 -32160683 + L1MA9 LINE L1 4280 4487 -3244 2074 99 10 23 chr21 12746887 12747191 -32160379 + AluSc SINE Alu 1 300 -9 9513 197 64 97 chr21 12747191 12748224 -32159346 + L1MA9 LINE L1 4487 5553 -2178 201 39 0 0 chr21 12748224 12748250 -32159320 + (CA)n Simple_repeat Simple_repeat 2 27 0 9513 197 64 97 chr21 12748250 12748568 -32159002 + L1MA9 LINE L1 5553 5880 -1851 1055 178 11 30 chr21 12748568 12748872 -32158698 + MER2 DNA MER2_type 9 344 -1 9513 197 64 97 chr21 12748872 12750362 -32157208 + L1MA9 LINE L1 5880 7444 -287 1586 171 11 82 chr21 12750372 12750728 -32156842 + MLT1B LTR MaLR 55 385 -5 4619 178 56 37 chr21 12751329 12752341 -32155229 + L1MC3 LINE L1 6754 7785 0 1012 98 0 0 chr21 12752617 12752749 -32154821 - AluY SINE Alu -179 132 1 494 178 44 15 chr21 12752926 12753061 -32154509 - Charlie7 DNA MER1_type 0 2612 2474 434 193 220 50 chr21 12753166 12753384 -32154186 - MLT1G LTR MaLR 0 590 336 570 122 0 0 chr21 12753412 12753510 -32154060 + (TG)n Simple_repeat Simple_repeat 2 99 0 540 261 117 52 chr21 12753515 12753764 -32153806 - MLT1G LTR MaLR -322 268 4 327 105 0 0 chr21 12754085 12754142 -32153428 + (T)n Simple_repeat Simple_repeat 1 57 0 537 131 33 6 chr21 12754301 12754547 -32153023 + AluSx SINE Alu 1 304 -8 2304 61 3 10 chr21 12756917 12757211 -32150359 - AluY SINE Alu -17 294 3 341 301 50 20 chr21 12757262 12757461 -32150109 - L1M4 LINE L1 -1175 4971 4767 265 283 56 32 chr21 12757686 12757937 -32149633 - L1M4 LINE L1 -1712 4434 4178 214 39 0 0 chr21 12758113 12758139 -32149431 + (TTA)n Simple_repeat Simple_repeat 2 180 0 2021 127 0 7 chr21 12758139 12758423 -32149147 - AluSx SINE Alu -1 309 3 23 54 0 0 chr21 12758428 12758465 -32149105 + AT_rich Low_complexity Low_complexity 1 37 0 210 216 69 78 chr21 12760164 12760266 -32147304 - MIR SINE MIR -50 212 112 21 0 0 0 chr21 12760607 12760628 -32146942 + AT_rich Low_complexity Low_complexity 1 21 0 477 169 0 0 chr21 12760891 12760968 -32146602 - AluJ/FLAM SINE Alu -235 77 1 186 324 27 36 chr21 12762515 12762626 -32144944 - MIR SINE MIR -24 238 129 406 316 163 39 chr21 12762634 12763163 -32144407 + L2 LINE L2 2472 3068 -245 314 24 0 24 chr21 12763747 12763788 -32143782 + L1M1 LINE L1 5664 5703 -599 350 299 39 16 chr21 12763816 12763943 -32143627 + L2 LINE L2 3181 3310 -3 332 271 12 35 chr21 12763944 12764029 -32143541 - MIR SINE MIR -158 104 22 23 33 0 0 chr21 12765546 12765576 -32141994 + AT_rich Low_complexity Low_complexity 1 30 0 2112 169 38 6 chr21 12765608 12765974 -32141596 - MLT1B LTR MaLR -8 382 5 229 318 23 23 chr21 12766198 12766286 -32141284 - L2 LINE L2 -2408 906 819 313 309 115 36 chr21 12766416 12766581 -32140989 - MIR SINE MIR -65 197 20 2383 99 0 3 chr21 12766808 12767121 -32140449 - AluSp SINE Alu -1 312 1 480 246 20 56 chr21 12767382 12767577 -32139993 - MER112 DNA MER1_type -35 225 38 253 285 35 42 chr21 12768026 12768170 -32139400 - L2 LINE L2 -96 3217 3075 695 296 39 30 chr21 12768368 12768571 -32138999 + MIR SINE MIR 8 212 -50 1579 301 43 16 chr21 12768593 12769104 -32138466 - MLT1H1 LTR MaLR -30 525 1 21 0 0 0 chr21 12769850 12769871 -32137699 + AT_rich Low_complexity Low_complexity 1 21 0 323 265 77 61 chr21 12770753 12770934 -32136636 + MIR3 SINE MIR 4 187 -21 230 296 61 38 chr21 12772618 12772750 -32134820 - HAL1 LINE L1 -179 2328 2194 298 202 183 10 chr21 12772776 12772880 -32134690 - HAL1 LINE L1 -285 2222 2101 364 297 81 48 chr21 12772887 12773255 -32134315 - MLT1I LTR MaLR -1 408 24 2579 289 103 49 chr21 12773361 12775085 -32132485 - HAL1 LINE L1 -579 1928 113 390 233 42 69 chr21 12775145 12775334 -32132236 - L1MC5 LINE L1 -46 7915 7732 326 359 8 0 chr21 12775613 12775741 -32131829 - MER94 DNA DNA -5 129 1 38 0 0 0 chr21 12776524 12776562 -32131008 + AT_rich Low_complexity Low_complexity 1 38 0 1980 243 58 55 chr21 12776754 12777506 -32130064 + L1ME3A LINE L1 5411 6165 -5 189 282 0 0 chr21 12777773 12777812 -32129758 - MIR SINE MIR -133 75 37 5357 114 51 34 chr21 12777983 12778871 -32128699 + MER4D LTR ERV1 1 903 0 279 0 0 0 chr21 12779676 12779707 -32127863 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 2947 171 19 76 chr21 12779864 12780597 -32126973 - LTR8 LTR ERV1 0 691 1 234 320 0 25 chr21 12781303 12781425 -32126145 + (TA)n Simple_repeat Simple_repeat 2 120 0 295 359 103 49 chr21 12781536 12782422 -32125148 - L2 LINE L2 -21 3251 2312 449 262 74 8 chr21 12782480 12782602 -32124968 + MER5B DNA MER1_type 1 130 -48 6124 95 10 9 chr21 12782608 12783509 -32124061 - L1PA12 LINE L1 0 6168 5267 367 349 16 16 chr21 12783595 12783724 -32123846 + MER5B DNA MER1_type 1 129 -49 408 175 0 0 chr21 12783725 12783805 -32123765 - L1MB7 LINE L1 -8 6176 6097 453 239 0 9 chr21 12783869 12783978 -32123592 - L1M4 LINE L1 -2027 4617 4510 * 2929 248 40 55 chr21 12783971 12784956 -32122614 - L1M4 LINE L1 -5557 985 16 357 372 91 26 chr21 12785037 12785456 -32122114 - L2 LINE L2 -1157 2157 1712 388 272 45 78 chr21 12785680 12785869 -32121701 + MIR SINE MIR 7 199 -63 335 364 45 0 chr21 12785892 12786024 -32121546 + MIR3 SINE MIR 60 197 -11 325 333 50 30 chr21 12788224 12788422 -32119148 + MIR3 SINE MIR 4 205 -3 33 0 0 0 chr21 12790183 12790216 -32117354 + AT_rich Low_complexity Low_complexity 1 33 0 186 340 75 0 chr21 12790524 12790618 -32116952 - MIR SINE MIR -66 196 96 739 191 53 33 chr21 12792068 12792220 -32115350 + MER45A DNA AcHobo 1 155 -23 263 120 40 40 chr21 12792817 12792892 -32114678 + (TTAA)n Simple_repeat Simple_repeat 2 76 0 242 356 113 9 chr21 12793084 12793199 -32114371 + L2 LINE L2 3145 3271 -1 1157 102 11 11 chr21 12793504 12793519 -32114051 + (GAAA)n Simple_repeat Simple_repeat 3 16 -337 2145 84 3 21 chr21 12793519 12793805 -32113765 + AluSp SINE Alu 1 281 -32 1157 102 11 11 chr21 12793805 12794141 -32113429 + (GAAA)n Simple_repeat Simple_repeat 16 353 0 1365 236 62 44 chr21 12794291 12794787 -32112783 - MLT1D LTR MaLR 0 505 1 230 239 0 60 chr21 12795465 12795532 -32112038 - L2 LINE L2 -1 3312 3250 246 174 0 0 chr21 12796464 12796510 -32111060 + CT-rich Low_complexity Low_complexity 5 50 0 272 143 6 6 chr21 12796627 12796648 -32110922 + Alu SINE Alu 256 257 -44 1647 78 0 23 chr21 12796648 12796865 -32110705 + AluSg SINE Alu 1 212 -98 272 143 6 6 chr21 12796865 12796905 -32110665 + Alu SINE Alu 256 295 -6 391 274 75 70 chr21 12796951 12797152 -32110418 - LTR33 LTR ERVL -16 505 304 871 74 0 0 chr21 12797486 12797594 -32109976 - AluSq/x SINE Alu -204 108 1 2174 123 3 3 chr21 12798956 12799266 -32108304 + AluSx SINE Alu 1 310 -2 215 256 318 0 chr21 12799586 12799715 -32107855 - MIR SINE MIR -14 248 79 446 353 102 49 chr21 12801812 12802776 -32104794 - L2 LINE L2 -12 3260 2246 28 0 0 0 chr21 12803372 12803400 -32104170 + AT_rich Low_complexity Low_complexity 1 28 0 25 0 0 0 chr21 12805002 12805027 -32102543 + AT_rich Low_complexity Low_complexity 1 25 0 647 217 25 6 chr21 12805134 12805291 -32102279 + MER105 DNA DNA 44 203 -1 322 336 15 8 chr21 12805305 12805436 -32102134 - L3b LINE CR1 -343 1240 1109 21 0 0 0 chr21 12807881 12807902 -32099668 + AT_rich Low_complexity Low_complexity 1 21 0 784 109 9 0 chr21 12808824 12808934 -32098636 + MER34 LTR ERV1 1 111 -431 780 146 0 58 chr21 12808935 12809072 -32098498 - FLAM_C SINE Alu -12 131 3 2572 153 23 0 chr21 12809072 12809504 -32098066 + MER34 LTR ERV1 101 542 0 349 308 56 43 chr21 12809558 12809926 -32097644 - L1MC4a LINE L1 -1886 5922 5542 219 36 0 0 chr21 12810779 12810807 -32096763 + (CAGG)n Simple_repeat Simple_repeat 3 30 0 351 0 0 0 chr21 12811242 12811281 -32096289 + (CA)n Simple_repeat Simple_repeat 2 40 0 5586 62 4 0 chr21 12811675 12812387 -32095183 + L1PA7 LINE L1 5440 6154 0 186 43 0 0 chr21 12813553 12813576 -32093994 + (TTTTC)n Simple_repeat Simple_repeat 2 24 0 191 240 115 39 chr21 12813955 12814059 -32093511 + MIR SINE MIR 40 151 -111 279 294 118 18 chr21 12814764 12814934 -32092636 + MIR SINE MIR 49 235 -27 208 229 0 14 chr21 12814957 12814981 -32092589 + (TTA)n Simple_repeat Simple_repeat 2 25 -45 1981 127 11 0 chr21 12814981 12815264 -32092306 + AluSx SINE Alu 2 287 -25 208 229 0 14 chr21 12815264 12815309 -32092261 + (TTA)n Simple_repeat Simple_repeat 25 70 0 205 205 0 0 chr21 12817156 12817195 -32090375 + A-rich Low_complexity Low_complexity 1 39 0 222 244 13 77 chr21 12817257 12817335 -32090235 + MIR SINE MIR 60 132 -76 1222 153 165 54 chr21 12818557 12818818 -32088752 + AluJo SINE Alu 1 290 -12 280 316 78 67 chr21 12818982 12819175 -32088395 - MIR SINE MIR -67 195 1 1546 203 162 58 chr21 12820724 12821256 -32086314 + MLT1E1 LTR MaLR 68 654 0 573 264 43 24 chr21 12821364 12821572 -32085998 + L1PA7 LINE L1 6 217 -6646 * 14512 192 26 14 chr21 12821548 12826515 -32081055 + L1PA7 LINE L1 1392 6454 -416 2161 88 48 0 chr21 12826515 12826810 -32080760 + AluSc SINE Alu 1 309 0 14512 192 26 14 chr21 12826810 12827228 -32080342 + L1PA7 LINE L1 6454 6866 -4 2625 42 7 0 chr21 12827525 12827832 -32079738 + AluY SINE Alu 1 309 -2 629 327 52 57 chr21 12831039 12831169 -32076401 - L2 LINE L2 0 3313 3184 246 81 0 0 chr21 12831169 12831206 -32076364 + (TG)n Simple_repeat Simple_repeat 2 38 0 629 327 52 57 chr21 12831206 12831603 -32075967 - L2 LINE L2 -129 3184 2791 1132 319 54 0 chr21 12831605 12831937 -32075633 + LTR16B LTR ERVL 1 350 -114 1329 331 73 46 chr21 12832055 12832930 -32074640 - L2 LINE L2 -593 2721 1823 2691 187 46 23 chr21 12833011 12834008 -32073562 + L1MB7 LINE L1 4836 5854 -330 2125 113 7 0 chr21 12834057 12834357 -32073213 - AluSx SINE Alu -9 303 2 21 95 0 0 chr21 12835467 12835530 -32072040 + AT_rich Low_complexity Low_complexity 1 63 0 410 171 0 6 chr21 12835585 12835702 -32071868 + MER5A DNA MER1_type 1 189 0 692 277 189 27 chr21 12835714 12836089 -32071481 + L2 LINE L2 2877 3312 -1 197 274 102 70 chr21 12836741 12836927 -32070643 + L2 LINE L2 3119 3310 -3 24 0 0 0 chr21 12837336 12837360 -32070210 + AT_rich Low_complexity Low_complexity 1 24 0 275 298 115 39 chr21 12837590 12837798 -32069772 + MIR SINE MIR 27 250 -12 218 206 32 16 chr21 12838031 12838094 -32069476 + (TA)n Simple_repeat Simple_repeat 1 64 0 2427 154 13 10 chr21 12838250 12838640 -32068930 + MER61B LTR ERV1 1 391 -34 32 0 0 0 chr21 12839138 12839170 -32068400 + AT_rich Low_complexity Low_complexity 1 32 0 1362 88 16 5 chr21 12839359 12839553 -32068017 + L1PA10 LINE L1 5973 6168 0 2595 190 43 38 chr21 12840190 12840791 -32066779 - MER6A DNA MER2_type 0 605 2 1054 249 64 17 chr21 12842184 12842530 -32065040 + L1MC5 LINE L1 5545 5906 -1902 1209 227 55 78 chr21 12842534 12843292 -32064278 + L1MC5 LINE L1 6923 7663 -298 357 196 61 54 chr21 12843303 12843451 -32064119 + L1MC5 LINE L1 7769 7917 -44 1916 129 0 11 chr21 12843526 12843835 -32063735 - AluSx SINE Alu 0 306 1 207 0 0 0 chr21 12845428 12845451 -32062119 + (A)n Simple_repeat Simple_repeat 1 23 0 31 44 0 0 chr21 12845651 12845696 -32061874 + AT_rich Low_complexity Low_complexity 1 45 0 397 304 19 12 chr21 12846516 12846677 -32060893 - MIR SINE MIR -15 247 86 264 399 21 31 chr21 12846743 12846936 -32060634 + L2 LINE L2 2863 3053 -219 2507 61 0 3 chr21 12847702 12848012 -32059558 + AluY SINE Alu 1 309 -2 298 292 95 0 chr21 12848284 12848421 -32059149 + MER117 DNA MER1_type 7 156 -41 32 43 0 0 chr21 12848631 12848677 -32058893 + AT_rich Low_complexity Low_complexity 1 46 0 23 0 0 0 chr21 12849349 12849372 -32058198 + AT_rich Low_complexity Low_complexity 1 23 0 1728 148 14 41 chr21 12850569 12850884 -32056686 - AluJo SINE Alu 0 307 1 207 0 0 0 chr21 12852112 12852135 -32055435 + (CAA)n Simple_repeat Simple_repeat 2 24 0 1292 39 13 0 chr21 12852184 12852339 -32055231 - AluY SINE Alu -11 300 144 309 380 25 10 chr21 12852384 12852584 -32054986 - MIR SINE MIR -58 204 2 187 372 44 26 chr21 12852599 12852712 -32054858 - L2 LINE L2 -210 3062 2948 310 284 23 11 chr21 12852755 12852843 -32054727 + MER5A DNA MER1_type 76 164 -25 284 130 0 0 chr21 12852844 12852890 -32054680 + MADE1 DNA Mariner 1 46 -34 1605 176 14 88 chr21 12853180 12853601 -32053969 + MLT1B LTR MaLR 1 390 0 778 297 204 13 chr21 12854563 12855202 -32052368 + L2 LINE L2 2531 3302 -11 521 271 14 29 chr21 12855289 12855429 -32052141 + MER5B DNA MER1_type 38 175 -3 273 303 34 11 chr21 12855499 12855588 -32051982 - MER5A DNA MER1_type -83 106 16 399 250 35 26 chr21 12856088 12856204 -32051366 + MIR SINE MIR 124 240 -22 10600 39 24 0 chr21 12856898 12858949 -32048621 + L1PA5 LINE L1 4078 6151 -3 1154 134 4 100 chr21 12859072 12859311 -32048259 - MER30 DNA MER1_type -13 217 2 296 273 0 0 chr21 12859329 12859395 -32048175 - L2 LINE L2 -1 3312 3247 935 211 29 10 chr21 12859463 12859667 -32047903 + AluJb SINE Alu 87 294 -18 213 87 87 22 chr21 12859667 12859713 -32047857 + GA-rich Low_complexity Low_complexity 1 49 0 310 339 60 18 chr21 12859979 12860147 -32047423 + MIR SINE MIR 77 251 -11 1346 159 61 43 chr21 12860320 12860543 -32047027 + AluJo SINE Alu 1 231 -81 207 0 0 0 chr21 12860543 12860566 -32047004 + (TTAGGG)n Simple_repeat Simple_repeat 4 26 0 1346 159 61 43 chr21 12860566 12860619 -32046951 + AluJo SINE Alu 231 282 -30 1812 169 0 3 chr21 12861721 12862016 -32045554 - AluJb SINE Alu -16 296 3 23 33 0 0 chr21 12862313 12862343 -32045227 + AT_rich Low_complexity Low_complexity 1 30 0 22 0 0 0 chr21 12864329 12864351 -32043219 + AT_rich Low_complexity Low_complexity 1 22 0 2122 104 0 4 chr21 12864381 12864659 -32042911 - AluSg SINE Alu -16 294 18 25 0 0 0 chr21 12865405 12865430 -32042140 + AT_rich Low_complexity Low_complexity 1 25 0 509 274 112 10 chr21 12869356 12869553 -32038017 - MIR SINE MIR 0 262 46 1938 172 8 27 chr21 12869996 12870363 -32037207 + MLT1A1 LTR MaLR 6 365 0 324 259 164 45 chr21 12870647 12871049 -32036521 - HAL1 LINE L1 -89 2418 1969 661 205 43 78 chr21 12871309 12871567 -32036003 - HAL1 LINE L1 -884 1623 1375 488 239 99 48 chr21 12871588 12871860 -32035710 - HAL1 LINE L1 -1216 1291 1006 579 283 151 5 chr21 12871874 12872079 -32035491 + MIR SINE MIR 12 246 -16 465 273 56 30 chr21 12872095 12872326 -32035244 - HAL1 LINE L1 -1502 1005 769 1729 195 10 0 chr21 12872355 12872658 -32034912 - AluJo SINE Alu -1 311 6 260 309 12 0 chr21 12874106 12874190 -32033380 + (TA)n Simple_repeat Simple_repeat 1 85 0 395 317 154 19 chr21 12874841 12875049 -32032521 + MIR SINE MIR 21 256 -6 267 324 34 40 chr21 12875396 12875572 -32031998 + L2 LINE L2 2826 3000 -313 301 182 61 0 chr21 12875792 12875858 -32031712 + L2 LINE L2 3203 3272 0 1855 144 0 16 chr21 12876063 12876368 -32031202 + AluSx SINE Alu 1 300 -12 1293 207 17 24 chr21 12877178 12877473 -32030097 - AluJo SINE Alu -19 293 1 371 359 60 71 chr21 12877607 12877972 -32029598 - L2 LINE L2 -2 3270 2910 830 178 100 6 chr21 12877975 12878155 -32029415 + LTR8 LTR ERV1 1 197 -494 541 200 27 9 chr21 12878505 12878615 -32028955 - MLT1C LTR MaLR 0 467 356 * 1666 196 99 73 chr21 12878599 12879135 -32028435 + LTR8A LTR ERV1 178 727 0 1794 190 29 74 chr21 12879259 12879748 -32027822 + MLT1C LTR MaLR 1 467 0 196 75 25 25 chr21 12880196 12880236 -32027334 + (TA)n Simple_repeat Simple_repeat 1 40 0 354 285 118 14 chr21 12882068 12882212 -32025358 - MIR SINE MIR -70 192 34 2153 93 31 3 chr21 12882680 12882971 -32024599 + AluSx SINE Alu 1 299 -13 243 283 67 25 chr21 12883236 12883356 -32024214 - MIR SINE MIR -29 233 109 2102 134 0 0 chr21 12884213 12884505 -32023065 - AluSx SINE Alu -20 292 1 29 78 0 0 chr21 12885010 12885074 -32022496 + AT_rich Low_complexity Low_complexity 1 64 0 292 259 114 15 chr21 12885407 12885538 -32022032 + MIR SINE MIR 35 178 -84 269 253 132 11 chr21 12885662 12885753 -32021817 - MER5A DNA MER1_type -1 188 87 286 277 60 12 chr21 12886249 12886332 -32021238 - MIR3 SINE MIR -28 180 94 1563 190 10 20 chr21 12886677 12886977 -32020593 + AluJo SINE Alu 1 297 -15 192 296 7 45 chr21 12888331 12888479 -32019091 + L2 LINE L2 2542 2727 -587 201 301 169 24 chr21 12888790 12888956 -32018614 + L2 LINE L2 3124 3313 0 29 28 0 0 chr21 12889811 12889847 -32017723 + AT_rich Low_complexity Low_complexity 1 36 0 483 367 40 9 chr21 12889855 12890081 -32017489 - MIR SINE MIR 0 262 30 426 304 21 19 chr21 12890145 12890329 -32017241 + MIR SINE MIR 6 143 -65 223 315 27 0 chr21 12890570 12890643 -32016927 + MIR SINE MIR 80 154 -108 189 0 0 0 chr21 12891199 12891220 -32016350 + (CAAAAA)n Simple_repeat Simple_repeat 3 23 0 297 365 68 14 chr21 12891397 12891545 -32016025 - MIR3 SINE MIR -32 176 21 216 97 0 0 chr21 12892811 12892842 -32014728 + (TGAA)n Simple_repeat Simple_repeat 3 33 0 2142 127 3 0 chr21 12894712 12894892 -32012678 - AluSg SINE Alu -1 309 126 486 49 0 0 chr21 12894892 12894953 -32012617 + (TA)n Simple_repeat Simple_repeat 1 61 0 2142 127 3 0 chr21 12894953 12895080 -32012490 - AluSg SINE Alu -184 126 1 1835 97 8 0 chr21 12896125 12896373 -32011197 + AluSg SINE Alu 56 305 -5 858 143 0 0 chr21 12897316 12897449 -32010121 - FLAM_C SINE Alu 0 133 1 278 359 0 26 chr21 12897569 12897686 -32009884 + L2 LINE L2 3158 3271 -1 283 358 48 41 chr21 12897723 12897991 -32009579 - L2 LINE L2 -191 3081 2812 341 344 56 8 chr21 12898679 12898804 -32008766 - MIR SINE MIR -112 150 20 718 214 19 169 chr21 12898852 12899014 -32008556 + MIR SINE MIR 1 97 -165 2469 58 0 6 chr21 12899014 12899327 -32008243 - AluY SINE Alu 0 311 1 718 214 19 169 chr21 12899327 12899472 -32008098 + MIR SINE MIR 97 262 0 23 0 0 0 chr21 12900499 12900522 -32007048 + AT_rich Low_complexity Low_complexity 1 23 0 21 0 0 0 chr21 12903354 12903375 -32004195 + AT_rich Low_complexity Low_complexity 1 21 0 2354 103 0 0 chr21 12903652 12903962 -32003608 + AluSg SINE Alu 1 310 0 564 325 68 34 chr21 12904127 12904478 -32003092 - L2 LINE L2 0 3313 2951 235 364 131 10 chr21 12904480 12904678 -32002892 - L2 LINE L2 -277 3036 2815 801 317 139 29 chr21 12904759 12905384 -32002186 + L2 LINE L2 1609 2302 -1012 246 32 0 0 chr21 12905414 12905445 -32002125 + (TTTA)n Simple_repeat Simple_repeat 1 31 0 6972 12 27 0 chr21 12905446 12906254 -32001316 - L1PA2 LINE L1 -5 6150 5321 386 338 93 24 chr21 12906263 12906553 -32001017 + L2 LINE L2 2348 2657 -657 461 300 67 17 chr21 12906853 12907033 -32000537 - MIR3 SINE MIR -1 207 19 255 148 98 0 chr21 12907206 12907267 -32000303 + L1MC4 LINE L1 6644 6710 -1332 1463 177 3 68 chr21 12907940 12908250 -31999320 - AluJo SINE Alu -14 298 9 27 0 0 0 chr21 12908811 12908838 -31998732 + AT_rich Low_complexity Low_complexity 1 27 0 21 0 0 0 chr21 12909955 12909976 -31997594 + AT_rich Low_complexity Low_complexity 1 21 0 317 289 60 2 chr21 12910121 12910239 -31997331 + MIR3 SINE MIR 42 166 -42 333 347 93 7 chr21 12910357 12910507 -31997063 - MIR3 SINE MIR -9 199 37 188 241 19 19 chr21 12911930 12912038 -31995532 + (TA)n Simple_repeat Simple_repeat 2 109 0 841 181 28 40 chr21 12912428 12912495 -31995075 + MLT1A1 LTR MaLR 1 67 -298 2306 181 24 2 chr21 12912495 12912914 -31994656 - MSTA LTR MaLR 0 428 1 841 181 28 40 chr21 12912914 12913023 -31994547 + MLT1A1 LTR MaLR 67 175 -190 788 155 16 0 chr21 12913031 12913160 -31994410 + MLT1A1 LTR MaLR 235 365 0 320 273 71 10 chr21 12913268 12913367 -31994203 - MIR SINE MIR -71 191 87 2198 231 30 27 chr21 12914089 12914652 -31992918 + MLT1F1 LTR MaLR 3 567 0 523 281 56 82 chr21 12915299 12915691 -31991879 - MLT1J LTR MaLR -19 492 111 1907 151 77 33 chr21 12916770 12916839 -31990731 + MSTB1 LTR MaLR 2 67 -365 1966 146 26 32 chr21 12916839 12917216 -31990354 + THE1C LTR MaLR 1 375 0 1907 151 77 33 chr21 12917216 12917536 -31990034 + MSTB1 LTR MaLR 67 408 -24 239 111 0 0 chr21 12917564 12917600 -31989970 + MSTB1 LTR MaLR 422 457 0 245 349 53 8 chr21 12917659 12917791 -31989779 - MER5A DNA MER1_type -50 139 2 243 241 19 0 chr21 12918540 12918594 -31988976 + GA-rich Low_complexity Low_complexity 1 55 0 417 252 9 17 chr21 12918712 12918827 -31988743 - MIR SINE MIR -121 141 28 256 325 95 16 chr21 12919986 12920112 -31987458 + MIR3 SINE MIR 69 204 -4 318 321 0 0 chr21 12920353 12920434 -31987136 - MIR3 SINE MIR -13 195 115 279 324 29 70 chr21 12921401 12921645 -31985925 - MER102a DNA MER1_type -5 325 92 1096 258 54 92 chr21 12921914 12922111 -31985459 + MLT1G LTR MaLR 14 217 -373 574 183 30 15 chr21 12922111 12922242 -31985328 + FLAM_A SINE Alu 1 133 0 1096 258 54 92 chr21 12922242 12922678 -31984892 + MLT1G LTR MaLR 217 590 0 2347 50 4 0 chr21 12923483 12923813 -31983757 - AluY SINE Alu 0 333 3 22 56 0 0 chr21 12924024 12924060 -31983510 + AT_rich Low_complexity Low_complexity 1 36 0 26 82 0 0 chr21 12924199 12924260 -31983310 + AT_rich Low_complexity Low_complexity 1 61 0 3894 199 82 4 chr21 12925712 12926476 -31981094 + L1M1 LINE L1 12 835 -6730 21 36 0 0 chr21 12926827 12926855 -31980715 + AT_rich Low_complexity Low_complexity 1 28 0 237 132 0 0 chr21 12926951 12926989 -31980581 + (TA)n Simple_repeat Simple_repeat 2 39 0 4968 155 63 42 chr21 12927383 12928432 -31979138 + MER11C LTR ERVK 1 1071 0 1026 198 6 0 chr21 12928613 12928795 -31978775 - AluJo SINE Alu -24 288 106 2117 102 3 7 chr21 12929628 12929913 -31977657 + AluSc SINE Alu 1 284 -25 384 253 32 32 chr21 12930855 12931009 -31976561 + L1MC5 LINE L1 7075 7228 -733 207 250 0 39 chr21 12931313 12931365 -31976205 + MIR SINE MIR 200 249 -13 23 0 0 0 chr21 12931471 12931494 -31976076 + AT_rich Low_complexity Low_complexity 1 23 0 522 226 13 13 chr21 12931527 12931682 -31975888 + L1MC5 LINE L1 7315 7469 -492 492 244 82 53 chr21 12931721 12932077 -31975493 + L1MC5 LINE L1 7548 7913 -48 201 254 0 75 chr21 12932365 12932432 -31975138 + MIR SINE MIR 200 261 -1 225 0 0 0 chr21 12933539 12933564 -31974006 + (A)n Simple_repeat Simple_repeat 1 25 0 301 75 38 0 chr21 12933695 12933748 -31973822 + A-rich Low_complexity Low_complexity 1 55 0 462 143 0 0 chr21 12936326 12936403 -31971167 + (TG)n Simple_repeat Simple_repeat 2 78 0 304 143 0 54 chr21 12937238 12937294 -31970276 - L2 LINE L2 0 3313 3261 1695 199 193 63 chr21 12937294 12937867 -31969703 - MER39 LTR ERV1 0 707 45 1743 150 72 31 chr21 12937867 12938227 -31969343 + THE1C LTR MaLR 1 375 0 1695 199 193 63 chr21 12938227 12938275 -31969295 - MER39 LTR ERV1 -662 45 5 41146 66 4 1 chr21 12938850 12944983 -31962587 + L1PA5 LINE L1 3 6152 -2 1345 139 63 0 chr21 12945862 12946114 -31961456 + L1MA5A LINE L1 6024 6291 -6 29 28 0 0 chr21 12946118 12946154 -31961416 + AT_rich Low_complexity Low_complexity 1 36 0 682 225 5 80 chr21 12946521 12946708 -31960862 - MIR SINE MIR -33 229 57 367 320 32 13 chr21 12948936 12949092 -31958478 - MIR SINE MIR -16 246 88 186 71 0 0 chr21 12949096 12949124 -31958446 + (TTTG)n Simple_repeat Simple_repeat 1 28 0 1557 111 5 0 chr21 12949150 12949357 -31958213 - AluSg SINE Alu -98 212 5 259 148 16 16 chr21 12949613 12949674 -31957896 + GA-rich Low_complexity Low_complexity 4 64 0 1430 267 111 30 chr21 12950293 12950791 -31956779 - MLT1E LTR MaLR -19 574 36 549 73 0 49 chr21 12950791 12950873 -31956697 + MLT2D LTR ERVL 1 78 -336 180 0 0 0 chr21 12950873 12950893 -31956677 + (TC)n Simple_repeat Simple_repeat 2 21 0 216 67 0 0 chr21 12950893 12950923 -31956647 + (CA)n Simple_repeat Simple_repeat 2 31 0 330 89 0 0 chr21 12950927 12950972 -31956598 + MLT2D LTR ERVL 370 414 0 344 357 57 0 chr21 12951091 12951231 -31956339 - MIR3 SINE MIR -18 190 43 255 246 18 0 chr21 12951514 12951571 -31955999 - tRNA-Ile-ATT tRNA tRNA -7 70 13 33 43 0 0 chr21 12951712 12951759 -31955811 + AT_rich Low_complexity Low_complexity 1 47 0 6249 95 5 25 chr21 12951764 12953061 -31954509 + L1PA8 LINE L1 4897 6172 0 198 0 0 0 chr21 12953520 12953542 -31954028 + (TTA)n Simple_repeat Simple_repeat 3 24 0 1717 57 70 4 chr21 12953542 12953771 -31953799 - L1PA6 LINE L1 -18 6136 5893 202 319 0 0 chr21 12953783 12953852 -31953718 - MIR SINE MIR -109 153 85 1983 102 3 71 chr21 12954258 12954581 -31952989 + AluY SINE Alu 1 301 -10 397 221 0 35 chr21 12954772 12954858 -31952712 + Charlie5 DNA MER1_type 1 83 -2529 190 0 0 62 chr21 12954858 12954890 -31952680 + (TTTAA)n Simple_repeat Simple_repeat 1 30 0 967 182 60 30 chr21 12954934 12955203 -31952367 + Charlie5 DNA MER1_type 2348 2624 0 180 346 111 0 chr21 12955222 12955303 -31952267 - MER5B DNA MER1_type -88 90 1 555 211 50 11 chr21 12955939 12956119 -31951451 - MER33 DNA MER1_type -111 213 27 563 231 41 18 chr21 12956138 12956307 -31951263 - MER58C DNA MER1_type 0 215 43 342 320 9 12 chr21 12956454 12956596 -31950974 - MIR SINE MIR -62 146 13 181 159 0 91 chr21 12956657 12956701 -31950869 - L2 LINE L2 0 3313 3274 2104 196 10 13 chr21 12956914 12957311 -31950259 - MSTD LTR MaLR 0 396 1 22 0 0 0 chr21 12958356 12958378 -31949192 + AT_rich Low_complexity Low_complexity 1 22 0 206 272 277 16 chr21 12959159 12959343 -31948227 + MIR SINE MIR 31 262 0 2394 157 48 0 chr21 12959497 12959910 -31947660 - Tigger2a DNA MER2_type -1 433 1 411 116 29 14 chr21 12960222 12960291 -31947279 - MER63 DNA MER1_type -314 747 678 318 293 171 6 chr21 12960344 12960525 -31947045 + MIR SINE MIR 52 262 0 19860 162 24 4 chr21 12961297 12964888 -31942682 + L1MA1 LINE L1 16 3675 -3890 8558 26 0 0 chr21 12964894 12965894 -31941676 - L1PA3 LINE L1 -1204 4942 3943 7615 25 0 3 chr21 12965894 12967134 -31940436 + L1PA3 LINE L1 4919 6155 0 13798 165 30 16 chr21 12967168 12967185 -31940385 + L1MA1 LINE L1 3672 3687 -4034 1888 171 0 0 chr21 12967185 12967470 -31940100 + AluSx SINE Alu 1 288 -24 405 0 0 0 chr21 12967470 12967515 -31940055 + (CA)n Simple_repeat Simple_repeat 2 46 0 1888 171 0 0 chr21 12967515 12967528 -31940042 + AluSx SINE Alu 287 299 -13 13798 165 30 16 chr21 12967528 12971497 -31936073 + L1MA1 LINE L1 3687 7717 -4 29 70 0 0 chr21 12971643 12971700 -31935870 + AT_rich Low_complexity Low_complexity 1 57 0 288 130 0 0 chr21 12972548 12972594 -31934976 + (GAAA)n Simple_repeat Simple_repeat 1 46 0 403 280 72 93 chr21 12972600 12973071 -31934499 + L1MEd LINE L1 696 1156 -4963 360 308 116 11 chr21 12973088 12973338 -31934232 + L1M4 LINE L1 3689 3980 -2166 409 281 60 22 chr21 12973660 12973927 -31933643 + L1M4 LINE L1 4383 4659 -1487 4229 183 23 33 chr21 12976959 12977842 -31929728 - L1MB3 LINE L1 -2 6181 5309 328 87 0 0 chr21 12977842 12977888 -31929682 + Alu SINE Alu 249 294 -7 2149 210 40 21 chr21 12977901 12978473 -31929097 - L1MB3 LINE L1 -836 5310 4728 417 261 36 9 chr21 12978552 12978663 -31928907 - MIR SINE MIR -129 133 20 234 246 16 0 chr21 12978682 12978743 -31928827 + MIR SINE MIR 82 143 -119 32 0 0 0 chr21 12978872 12978904 -31928666 + AT_rich Low_complexity Low_complexity 1 32 0 2617 141 52 12 chr21 12978906 12979402 -31928168 - L1MA8 LINE L1 -4 6287 5772 1039 128 0 0 chr21 12979402 12979551 -31928019 + L1MA8 LINE L1 5624 5772 -519 246 239 80 11 chr21 12979734 12979822 -31927748 - MLT1L LTR MaLR -2 613 520 267 236 0 0 chr21 12979904 12979959 -31927611 - MLT1L LTR MaLR -221 394 340 352 257 63 48 chr21 12980251 12980457 -31927113 - L1MC5 LINE L1 -41 7920 7712 288 366 16 8 chr21 12980535 12980658 -31926912 + MLT1H LTR MaLR 72 195 -354 1287 142 8 4 chr21 12980676 12980916 -31926654 - L1MA7 LINE L1 -1 6290 6050 720 229 113 51 chr21 12980931 12981279 -31926291 + MLT1G1 LTR MaLR 142 646 -8 214 208 0 21 chr21 12981325 12981373 -31926197 + GA-rich Low_complexity Low_complexity 2 48 0 259 261 159 19 chr21 12981392 12981549 -31926021 - L1MC4 LINE L1 -366 7676 7498 2269 94 0 16 chr21 12981804 12982111 -31925459 - AluSg SINE Alu -8 302 1 274 207 11 58 chr21 12982146 12982233 -31925337 - L1MC5 LINE L1 -818 7143 7061 1814 153 52 30 chr21 12982269 12982636 -31924934 - THE1C LTR MaLR 0 375 1 232 294 0 0 chr21 12982676 12982727 -31924843 + polypyrimidine Low_complexity Low_complexity 2 52 0 460 283 62 26 chr21 12982745 12982971 -31924599 - L1MC4 LINE L1 -977 7065 6832 320 298 92 23 chr21 12983655 12983786 -31923784 + MIR SINE MIR 10 149 -113 207 114 0 0 chr21 12984782 12984817 -31922753 + (GA)n Simple_repeat Simple_repeat 2 36 0 450 0 0 0 chr21 12985020 12985070 -31922500 + (TA)n Simple_repeat Simple_repeat 2 51 0 5233 103 4 21 chr21 12985081 12985884 -31921686 - L1P LINE L1 -956 5190 4402 5068 119 12 1 chr21 12985882 12986652 -31920918 + L1P LINE L1 3626 4403 -1743 * 4168 80 5 7 chr21 12986662 12987235 -31920335 - L1PA7 LINE L1 -2 6152 5581 218 224 60 30 chr21 12987359 12987426 -31920144 + MIR3 SINE MIR 111 179 -29 2336 112 19 25 chr21 12987804 12988170 -31919400 + THE1B LTR MaLR 1 364 0 1246 244 97 31 chr21 12988710 12989193 -31918377 - L1ME3 LINE L1 0 6162 5648 240 289 0 0 chr21 12989204 12989294 -31918276 - L1MC4 LINE L1 -1339 6703 6614 235 281 0 0 chr21 12989253 12989342 -31918228 + L1MC4 LINE L1 6615 6703 -1339 * 236 143 0 0 chr21 12989314 12989363 -31918207 - L1MC4 LINE L1 -1339 6703 6655 408 324 92 0 chr21 12989402 12989575 -31917995 - L1ME3 LINE L1 -529 5637 5449 1515 283 75 10 chr21 12989594 12990287 -31917283 - L1ME3 LINE L1 -745 5401 4664 278 362 68 18 chr21 12990301 12990464 -31917106 + MIR3 SINE MIR 23 193 -15 231 311 146 0 chr21 12991219 12991322 -31916248 - MIR SINE MIR -60 202 85 296 363 0 0 chr21 12991991 12992082 -31915488 - MIR SINE MIR -126 136 46 276 309 2 0 chr21 12992088 12992163 -31915407 - MIR SINE MIR -91 117 42 270 299 93 0 chr21 12992993 12993100 -31914470 + MIR3 SINE MIR 68 184 -24 391 350 96 39 chr21 12994992 12995452 -31912118 + L2 LINE L2 1634 2119 -1195 511 309 184 3 chr21 12995685 12995967 -31911603 - LTR16C LTR ERVL -3 488 156 191 320 50 10 chr21 12996274 12996374 -31911196 + L2 LINE L2 2958 3061 -211 368 325 19 13 chr21 12996647 12996801 -31910769 - Tigger8 DNA MER2_type -23 643 489 2210 128 28 11 chr21 12997337 12997695 -31909875 - THE1B LTR MaLR 0 364 1 510 200 144 31 chr21 12997855 12998015 -31909555 + MER5B DNA MER1_type 1 178 0 671 218 30 79 chr21 12998017 12998182 -31909388 + MER5A DNA MER1_type 29 185 -4 464 331 26 9 chr21 12998346 12998566 -31909004 + MIR SINE MIR 34 256 -6 2670 80 19 3 chr21 12998983 12999358 -31908212 + L1PA8 LINE L1 5791 6171 -1 26 30 0 0 chr21 12999492 12999525 -31908045 + AT_rich Low_complexity Low_complexity 1 33 0 214 161 0 48 chr21 13000867 13000929 -31906641 + GA-rich Low_complexity Low_complexity 3 61 0 1671 192 72 3 chr21 13000929 13001263 -31906307 + MLT1A1 LTR MaLR 1 357 -8 625 182 11 17 chr21 13001298 13001474 -31906096 + GA-rich Low_complexity Low_complexity 4 178 0 2102 131 0 13 chr21 13001487 13001792 -31905778 - AluSx SINE Alu -11 301 1 1882 106 64 0 chr21 13002426 13002690 -31904880 - AluSq SINE Alu -25 288 8 373 350 52 75 chr21 13002713 13003179 -31904391 + L2 LINE L2 2808 3262 -10 2130 101 0 4 chr21 13003710 13003988 -31903582 - AluSc SINE Alu -16 293 17 466 227 187 44 chr21 13004616 13004819 -31902751 + MIR SINE MIR 6 237 -25 182 323 16 0 chr21 13004787 13004849 -31902721 + L2 LINE L2 3210 3272 0 * 305 373 92 7 chr21 13005032 13005185 -31902385 - MIR3 SINE MIR -23 185 20 195 207 224 0 chr21 13005589 13005647 -31901923 + L2 LINE L2 3187 3257 -15 300 255 156 43 chr21 13005671 13005812 -31901758 - MER5A DNA MER1_type 0 189 33 2581 103 14 0 chr21 13007053 13007411 -31900159 - THE1B LTR MaLR 0 364 2 189 0 0 0 chr21 13009428 13009449 -31898121 + (CA)n Simple_repeat Simple_repeat 2 22 0 24 0 0 0 chr21 13010482 13010506 -31897064 + AT_rich Low_complexity Low_complexity 1 24 0 1645 168 27 20 chr21 13010506 13010804 -31896766 - AluJb SINE Alu -11 301 2 1786 48 0 5 chr21 13010807 13011017 -31896553 - AluY SINE Alu -17 294 86 315 0 0 0 chr21 13011656 13011691 -31895879 + (CA)n Simple_repeat Simple_repeat 2 36 0 1741 112 4 0 chr21 13012214 13012446 -31895124 + AluSq SINE Alu 16 248 -65 234 347 20 10 chr21 13012996 13013094 -31894476 + L2 LINE L2 2987 3085 -187 404 254 35 26 chr21 13013289 13013403 -31894167 - MIR SINE MIR -95 167 53 554 168 0 0 chr21 13014449 13014542 -31893028 + MLT1A1 LTR MaLR 1 93 -272 392 92 0 0 chr21 13014542 13014604 -31892966 - MLT2A1 LTR ERVL 0 444 336 337 121 64 23 chr21 13014618 13014791 -31892779 + (TA)n Simple_repeat Simple_repeat 1 180 0 198 0 0 0 chr21 13014858 13014880 -31892690 + (TA)n Simple_repeat Simple_repeat 2 23 0 3118 84 0 0 chr21 13014880 13015284 -31892286 - MLT2A1 LTR ERVL -40 404 1 984 234 61 19 chr21 13015284 13015545 -31892025 + MLT1A1 LTR MaLR 89 360 -5 1319 265 73 2 chr21 13016132 13016550 -31891020 - MER110 LTR ERV1 0 491 1 486 276 6 31 chr21 13017512 13017675 -31889895 + MER117 DNA MER1_type 35 193 -4 749 284 31 25 chr21 13017998 13018315 -31889255 + MER110 LTR ERV1 166 484 -7 365 313 35 21 chr21 13018574 13018718 -31888852 - MER5A DNA MER1_type -1 188 43 243 0 0 0 chr21 13019566 13019593 -31887977 + (TG)n Simple_repeat Simple_repeat 2 28 0 192 111 0 0 chr21 13020222 13020258 -31887312 + (T)n Simple_repeat Simple_repeat 1 36 0 355 279 202 8 chr21 13021093 13021222 -31886348 + MER5A DNA MER1_type 32 185 -4 2269 93 0 6 chr21 13021501 13021812 -31885758 - AluY SINE Alu -2 309 1 1771 198 8 76 chr21 13022287 13022786 -31884784 - MER31B LTR ERV1 -1 465 1 222 317 138 38 chr21 13022823 13023063 -31884507 + L2 LINE L2 2608 2871 -443 238 355 75 0 chr21 13023562 13023655 -31883915 - L2 LINE L2 -4 3309 3210 212 294 59 0 chr21 13023828 13023896 -31883674 - MER5A DNA MER1_type -114 75 4 1858 135 72 26 chr21 13025336 13025684 -31881886 - THE1B LTR MaLR 0 364 1 551 346 21 13 chr21 13027969 13028203 -31879367 - L3b LINE CR1 -244 1339 1104 2194 74 51 3 chr21 13028285 13028581 -31878989 - AluY SINE Alu -1 310 1 1892 269 55 53 chr21 13030187 13031199 -31876371 + L1MEc LINE L1 1458 2471 -3925 2528 290 55 8 chr21 13031459 13032648 -31874922 - L1ME3A LINE L1 -11 6159 4862 276 236 126 16 chr21 13032873 13033000 -31874570 - L1ME4a LINE L1 -18 6103 5963 814 288 21 64 chr21 13033122 13033449 -31874121 + L1MDb LINE L1 5 317 -6092 4442 220 92 36 chr21 13033615 13035099 -31872471 + L1MDb LINE L1 660 2060 -4346 1784 182 0 19 chr21 13035099 13035417 -31872153 + AluJb SINE Alu 1 312 0 4442 220 92 36 chr21 13035417 13035439 -31872131 + L1MDb LINE L1 2060 2079 -4327 1354 204 25 83 chr21 13035439 13035836 -31871734 - MLT1A2 LTR MaLR 0 374 1 4442 220 92 36 chr21 13035836 13035947 -31871623 + L1MDb LINE L1 2079 2182 -4224 225 0 0 0 chr21 13035947 13035972 -31871598 + (CAAA)n Simple_repeat Simple_repeat 2 26 0 4442 220 92 36 chr21 13035972 13036157 -31871413 + L1MDb LINE L1 2182 2564 -3842 195 100 0 0 chr21 13037521 13037551 -31870019 + (CAATT)n Simple_repeat Simple_repeat 4 33 0 220 155 17 17 chr21 13037695 13037753 -31869817 + CT-rich Low_complexity Low_complexity 2 59 0 21 0 0 0 chr21 13039749 13039770 -31867800 + AT_rich Low_complexity Low_complexity 1 21 0 4521 56 2 2 chr21 13039770 13040338 -31867232 - L1PA8 LINE L1 -9 6163 5596 1555 137 44 0 chr21 13041151 13041377 -31866193 + AluSx SINE Alu 1 236 -76 212 125 42 0 chr21 13041661 13041709 -31865861 + A-rich Low_complexity Low_complexity 4 53 0 2101 118 0 10 chr21 13041818 13042122 -31865448 + AluSc SINE Alu 1 301 -8 321 267 9 26 chr21 13042259 13042375 -31865195 - MLT1J LTR MaLR 0 511 398 452 99 0 0 chr21 13042624 13042695 -31864875 - L1MA3 LINE L1 0 6305 6235 231 186 58 0 chr21 13043011 13043167 -31864403 + (TA)n Simple_repeat Simple_repeat 1 165 0 954 135 0 0 chr21 13043232 13043365 -31864205 + AluJo SINE Alu 2 134 -178 826 199 22 167 chr21 13043410 13043902 -31863668 + L1MC5 LINE L1 6755 7175 -786 690 224 110 26 chr21 13043932 13044178 -31863392 + L1MC5 LINE L1 7603 7876 -85 467 110 41 0 chr21 13044178 13044251 -31863319 - MADE1 DNA Mariner 0 80 5 690 224 110 26 chr21 13044251 13044276 -31863294 + L1MC5 LINE L1 7876 7897 -64 917 224 37 113 chr21 13044295 13044729 -31862841 - LTR37A LTR ERV1 0 426 26 2291 192 47 16 chr21 13044786 13045276 -31862294 + MLT1D LTR MaLR 1 505 0 1230 284 58 52 chr21 13045648 13046323 -31861247 - MER31-int LTR ERV1 -875 4061 3383 260 222 0 0 chr21 13046376 13046430 -31861140 - MER58A DNA MER1_type -9 215 162 1404 205 31 0 chr21 13046430 13046689 -31860881 + AluJo SINE Alu 1 267 -45 566 219 65 47 chr21 13046706 13046875 -31860695 - MER58A DNA MER1_type -52 172 1 219 293 122 24 chr21 13047367 13047449 -31860121 - MER5B DNA MER1_type -87 91 2 1652 228 52 38 chr21 13047487 13047934 -31859636 - LTR40c LTR ERVL -12 453 1 591 235 39 88 chr21 13048123 13048408 -31859162 - MER31-int LTR ERV1 -1870 3066 2796 2151 139 0 0 chr21 13048613 13048922 -31858648 + AluSx SINE Alu 1 309 -3 2466 72 0 7 chr21 13049222 13049529 -31858041 - AluY SINE Alu -6 305 1 558 216 35 35 chr21 13049639 13049810 -31857760 + Charlie1 DNA MER1_type 2551 2721 -40 1798 168 6 25 chr21 13050062 13050378 -31857192 - AluJo SINE Alu 0 312 3 287 218 61 61 chr21 13050650 13050797 -31856773 - MER31-int LTR ERV1 -3488 1448 1302 2491 76 0 0 chr21 13050979 13051281 -31856289 - AluY SINE Alu -9 302 1 324 171 0 18 chr21 13051879 13051954 -31855616 - LTR37A LTR ERV1 0 426 361 844 189 52 0 chr21 13052161 13052314 -31855256 - MER3 DNA MER1_type -2 207 47 1850 177 85 22 chr21 13052650 13053052 -31854518 + MLT1C LTR MaLR 1 427 -40 899 224 35 51 chr21 13053050 13053362 -31854208 - LTR37A LTR ERV1 -42 384 78 * 497 227 85 44 chr21 13053801 13053974 -31853596 - MLT1J2 LTR MaLR -8 438 267 254 255 51 10 chr21 13054074 13054172 -31853398 - MLT1J1 LTR MaLR -331 115 14 349 303 14 14 chr21 13055527 13055755 -31851815 + L1ME3 LINE L1 5720 5947 -223 3521 66 2 0 chr21 13056149 13056601 -31850969 - L1PA7 LINE L1 -12 6142 5690 249 291 63 0 chr21 13056811 13056890 -31850680 + L2 LINE L2 3180 3263 -50 225 225 84 14 chr21 13057662 13057733 -31849837 + MIR SINE MIR 178 253 -9 32 43 0 0 chr21 13057755 13057801 -31849769 + AT_rich Low_complexity Low_complexity 1 46 0 269 319 151 6 chr21 13058219 13058385 -31849185 + MIR3 SINE MIR 17 206 -2 22 0 0 0 chr21 13058487 13058509 -31849061 + AT_rich Low_complexity Low_complexity 1 22 0 308 273 189 7 chr21 13059065 13059208 -31848362 + MER5A DNA MER1_type 21 189 0 763 218 72 104 chr21 13061301 13061800 -31845770 + L1M1 LINE L1 3142 3624 -3941 2115 106 3 3 chr21 13061829 13062145 -31845425 + AluSc SINE Alu 1 316 0 1635 146 175 26 chr21 13062149 13062492 -31845078 - MSTA LTR MaLR -34 394 1 8897 153 30 30 chr21 13062492 13064071 -31843499 - MSTA-int LTR MaLR 0 1580 3 2063 136 121 23 chr21 13064073 13064463 -31843107 - MSTA LTR MaLR 0 428 1 733 271 55 30 chr21 13064711 13064788 -31842782 + MIR SINE MIR 8 82 -180 1682 191 50 19 chr21 13064788 13065166 -31842404 - MLT1B LTR MaLR 0 390 1 733 271 55 30 chr21 13065166 13065324 -31842246 + MIR SINE MIR 82 249 -13 2134 134 3 0 chr21 13065795 13066100 -31841470 + AluSq SINE Alu 1 306 -7 1122 227 59 0 chr21 13066854 13067140 -31840430 + L1MA4 LINE L1 5993 6295 -5 223 240 0 0 chr21 13068122 13068172 -31839398 + (TGAA)n Simple_repeat Simple_repeat 1 50 0 224 327 139 0 chr21 13068741 13068842 -31838728 + MIR SINE MIR 20 134 -74 * 511 343 137 27 chr21 13068826 13069361 -31838209 + L2 LINE L2 2651 3243 -70 428 209 18 0 chr21 13069408 13069518 -31838052 + GA-rich Low_complexity Low_complexity 2 113 0 637 329 46 21 chr21 13070841 13071240 -31836330 + L1M3c LINE L1 17 920 -5211 328 326 89 73 chr21 13071259 13071695 -31835875 + L1M3d LINE L1 626 1068 -5235 2946 252 58 21 chr21 13071839 13072915 -31834655 + L1MB1 LINE L1 801 1836 -4546 1934 208 3 3 chr21 13072915 13073280 -31834290 + MLT1A1 LTR MaLR 1 365 0 2946 252 58 21 chr21 13073280 13074530 -31833040 + L1MB1 LINE L1 1836 3215 -3167 2745 200 46 9 chr21 13074525 13074971 -31832599 + L1MB1 LINE L1 4020 4501 -1881 * 225 65 0 0 chr21 13074971 13075002 -31832568 + (CA)n Simple_repeat Simple_repeat 2 32 0 2745 200 46 9 chr21 13075002 13075225 -31832345 + L1MB1 LINE L1 4501 4714 -1668 204 40 0 0 chr21 13075225 13075250 -31832320 + (CA)n Simple_repeat Simple_repeat 2 26 0 213 121 0 0 chr21 13076657 13076690 -31830880 + (TGG)n Simple_repeat Simple_repeat 1 33 0 3807 180 47 26 chr21 13076915 13078157 -31829413 + L1MB1 LINE L1 4701 5992 -412 2166 75 3 39 chr21 13078157 13078464 -31829106 + AluY SINE Alu 1 296 -15 3807 180 47 26 chr21 13078464 13078887 -31828683 + L1MB1 LINE L1 5992 6404 0 282 324 131 12 chr21 13080448 13080692 -31826878 + L2 LINE L2 1306 1578 -1736 383 212 71 10 chr21 13080705 13080804 -31826766 - L2 LINE L2 -17 3296 3192 268 339 183 3 chr21 13081086 13081375 -31826195 + L2 LINE L2 1954 2294 -1020 578 288 67 15 chr21 13081542 13081849 -31825721 - MLT1J1 LTR MaLR -73 373 62 2310 166 57 5 chr21 13082187 13082590 -31824980 + MSTB LTR MaLR 2 425 -1 25 65 0 0 chr21 13082608 13082654 -31824916 + AT_rich Low_complexity Low_complexity 1 46 0 315 0 0 0 chr21 13083274 13083309 -31824261 + (CA)n Simple_repeat Simple_repeat 2 36 0 198 316 82 53 chr21 13083352 13083523 -31824047 + L2 LINE L2 2935 3110 -162 242 296 49 12 chr21 13083576 13083657 -31823913 + L2 LINE L2 3227 3310 -3 570 277 76 72 chr21 13084478 13084897 -31822673 - L2 LINE L2 -63 3250 2830 363 157 0 0 chr21 13086142 13086212 -31821358 + (CA)n Simple_repeat Simple_repeat 2 71 0 2064 136 7 0 chr21 13086367 13086668 -31820902 + AluSq SINE Alu 2 304 -9 238 31 0 0 chr21 13087550 13087582 -31819988 - HSMAR1 DNA Mariner -1255 32 1 334 287 23 11 chr21 13087988 13088075 -31819495 + MER5A DNA MER1_type 2 89 -100 533 233 14 10 chr21 13088131 13088252 -31819318 + MER5A DNA MER1_type 54 189 0 1780 200 189 44 chr21 13088608 13089154 -31818416 + MLT1E2 LTR MaLR 1 625 -1 2127 161 23 8 chr21 13089775 13090159 -31817411 - MLT1B LTR MaLR 0 390 1 613 301 32 0 chr21 13090621 13090807 -31816763 - MIR SINE MIR -11 251 60 822 217 57 12 chr21 13091686 13091930 -31815640 + L1MEc LINE L1 1610 1864 -4532 1541 252 96 26 chr21 13093195 13094131 -31813439 + L1MEc LINE L1 1850 2837 -3378 515 153 31 0 chr21 13094167 13094265 -31813305 - L1MB4 LINE L1 -1 6179 6079 323 293 12 60 chr21 13094336 13094503 -31813067 + L1MEc LINE L1 3240 3398 -2817 1290 269 23 52 chr21 13094503 13095229 -31812341 + L1ME1 LINE L1 2892 3596 -2619 980 240 86 103 chr21 13095257 13096056 -31811514 + L1ME1 LINE L1 3863 4648 -1567 1116 123 0 18 chr21 13096060 13096230 -31811340 + THE1C LTR MaLR 1 167 -208 448 125 0 0 chr21 13096231 13096303 -31811267 - Alu SINE Alu -6 306 235 1478 110 28 5 chr21 13096303 13096521 -31811049 + THE1C LTR MaLR 153 375 0 37932 81 10 9 chr21 13096606 13098006 -31809564 + L1PA6 LINE L1 11 1408 -4765 205 29 59 0 chr21 13098006 13098040 -31809530 + (AAATG)n Simple_repeat Simple_repeat 5 40 0 37932 81 10 9 chr21 13098040 13102794 -31804776 + L1PA6 LINE L1 1408 6173 0 2737 219 71 37 chr21 13102908 13104221 -31803349 + L1ME1 LINE L1 4858 6231 -4 249 236 60 126 chr21 13105244 13105426 -31802144 - MLT1I LTR MaLR -19 390 221 485 267 80 27 chr21 13106601 13106751 -31800819 + MLT1F1 LTR MaLR 1 158 -384 2304 91 0 0 chr21 13106761 13107057 -31800513 + AluY SINE Alu 1 296 -15 1305 206 67 103 chr21 13107069 13107505 -31800065 + MLT1F1 LTR MaLR 148 567 0 209 57 29 0 chr21 13107671 13107706 -31799864 + (TA)n Simple_repeat Simple_repeat 1 36 0 2328 151 16 3 chr21 13107713 13108078 -31799492 - THE1C LTR MaLR -5 370 1 1723 193 10 13 chr21 13108342 13108653 -31798917 - AluJo SINE Alu -2 310 1 1977 147 0 0 chr21 13109142 13109428 -31798142 - AluSx SINE Alu -24 288 3 311 277 59 10 chr21 13109453 13109554 -31798016 - MIR SINE MIR -156 106 1 1807 165 99 6 chr21 13109655 13109989 -31797581 + MLT1A1 LTR MaLR 1 365 0 919 271 99 43 chr21 13109991 13110363 -31797207 + MSTD LTR MaLR 1 393 -3 214 255 0 0 chr21 13110383 13110430 -31797140 + (ATG)n Simple_repeat Simple_repeat 2 48 0 326 277 69 46 chr21 13110440 13110570 -31797000 - MIR SINE MIR -17 245 113 489 303 85 0 chr21 13111881 13112046 -31795524 - MIR SINE MIR -29 233 55 717 196 94 0 chr21 13112754 13112862 -31794708 + AluJo SINE Alu 12 137 -175 450 0 0 0 chr21 13112862 13112912 -31794658 + (TAA)n Simple_repeat Simple_repeat 2 51 0 717 196 94 0 chr21 13112912 13112941 -31794629 + AluJo SINE Alu 137 162 -150 21 36 0 0 chr21 13113336 13113364 -31794206 + AT_rich Low_complexity Low_complexity 1 28 0 528 293 75 75 chr21 13113365 13113802 -31793768 + L1MEd LINE L1 787 1223 -5149 2669 240 45 31 chr21 13114182 13115968 -31791602 + L1M3 LINE L1 2 1858 -4353 482 245 8 27 chr21 13115966 13116137 -31791433 + L1MEd LINE L1 2351 2518 -3864 * 314 263 0 0 chr21 13116157 13116256 -31791314 + L1MEd LINE L1 3139 3237 -3145 5946 160 11 19 chr21 13116278 13118162 -31789408 - L1MA2 LINE L1 0 6304 4435 644 161 14 21 chr21 13118210 13118353 -31789217 + L1M3 LINE L1 4316 4457 -1753 * 38028 52 2 5 chr21 13118350 13123956 -31783614 + L1PA4 LINE L1 555 6155 0 30 0 0 0 chr21 13123985 13124015 -31783555 + AT_rich Low_complexity Low_complexity 1 30 0 3781 187 23 5 chr21 13124022 13124817 -31782753 + L1M3 LINE L1 4462 5270 -940 2098 172 47 15 chr21 13124817 13125223 -31782347 + MSTC LTR MaLR 1 419 -9 985 126 8 126 chr21 13125240 13125486 -31782084 + L1M3 LINE L1 5319 5535 -697 11381 78 31 31 chr21 13125486 13125643 -31781927 + HUERS-P1 LTR ERV1 4579 4735 -1528 2211 47 0 0 chr21 13125643 13125901 -31781669 + AluY SINE Alu 40 297 -14 11381 78 31 31 chr21 13125901 13127429 -31780141 + HUERS-P1 LTR ERV1 4735 6263 0 4155 94 23 3 chr21 13127429 13128005 -31779565 + LTR8 LTR ERV1 1 587 -104 5093 161 30 21 chr21 13128013 13129573 -31777997 + L1MA7 LINE L1 4600 6183 -108 2389 62 27 0 chr21 13129573 13129865 -31777705 - AluY SINE Alu -11 300 1 5093 161 30 21 chr21 13129865 13129972 -31777598 + L1MA7 LINE L1 6183 6288 -3 589 194 0 0 chr21 13130040 13130143 -31777427 - Tigger7 DNA MER2_type 0 2487 2385 * 1434 202 23 4 chr21 13130138 13130400 -31777170 - Tigger7 DNA MER2_type -466 267 1 1974 255 90 9 chr21 13130436 13131380 -31776190 + L1MEc LINE L1 2121 3108 -3107 499 257 9 0 chr21 13131821 13131934 -31775636 + MER81 DNA DNA 1 114 0 210 37 0 0 chr21 13132591 13132618 -31774952 + (CA)n Simple_repeat Simple_repeat 2 28 0 698 198 109 0 chr21 13133784 13133976 -31773594 + L1MB4 LINE L1 5934 6146 -34 750 292 85 4 chr21 13134144 13134380 -31773190 + MIR SINE MIR 3 257 -5 25 83 0 0 chr21 13134708 13134768 -31772802 + AT_rich Low_complexity Low_complexity 1 60 0 22 0 0 0 chr21 13136921 13136943 -31770627 + AT_rich Low_complexity Low_complexity 1 22 0 547 255 107 23 chr21 13137092 13137308 -31770262 + MIR SINE MIR 29 262 0 1336 81 0 0 chr21 13137437 13137610 -31769960 - AluSg/x SINE Alu -3 307 135 180 0 0 0 chr21 13138637 13138657 -31768913 + (A)n Simple_repeat Simple_repeat 1 20 0 2758 16 0 0 chr21 13142344 13142657 -31764913 - L1P1 LINE L1 -478 5677 5365 4476 16 0 0 chr21 13142657 13143201 -31764369 + L1PA2 LINE L1 5642 6190 0 207 288 123 51 chr21 13144251 13144487 -31763083 + L2 LINE L2 2523 2775 -539 197 281 190 8 chr21 13144735 13144856 -31762714 + L2 LINE L2 3170 3312 -1 194 116 23 0 chr21 13145511 13145554 -31762016 + (TA)n Simple_repeat Simple_repeat 1 44 0 2087 115 45 0 chr21 13145608 13145895 -31761675 - AluSx SINE Alu -12 300 1 210 289 40 53 chr21 13146153 13146229 -31761341 - L3 LINE CR1 -11 1566 1492 1700 119 0 4 chr21 13146315 13146551 -31761019 + AluSq SINE Alu 1 235 -78 1623 226 42 53 chr21 13148146 13148672 -31758898 - MLT2B1 LTR ERVL 0 520 1 936 208 98 37 chr21 13149829 13150074 -31757496 - ORSL DNA AcHobo -15 260 1 1980 146 140 8 chr21 13150282 13150660 -31756910 - MSTA LTR MaLR 0 428 1 202 211 19 0 chr21 13150671 13150723 -31756847 + GA-rich Low_complexity Low_complexity 2 54 0 1516 201 16 73 chr21 13150890 13151274 -31756296 - MLT1B LTR MaLR 0 390 29 808 274 39 0 chr21 13151500 13151704 -31755866 + MIR SINE MIR 1 212 -50 497 186 20 29 chr21 13151936 13152038 -31755532 + MIR SINE MIR 118 218 -44 22 35 0 0 chr21 13153087 13153116 -31754454 + AT_rich Low_complexity Low_complexity 1 29 0 1758 181 14 0 chr21 13154129 13154422 -31753148 - AluJb SINE Alu -15 297 1 721 323 103 18 chr21 13155462 13155793 -31751777 - L2 LINE L2 -1 3312 2954 288 311 96 30 chr21 13157676 13157843 -31749727 - MIR SINE MIR -6 256 79 266 209 58 47 chr21 13158151 13158237 -31749333 + LTR48 LTR ERV1 171 257 -530 377 221 81 58 chr21 13158393 13158565 -31749005 + MER34 LTR ERV1 367 542 0 2878 146 69 22 chr21 13158724 13159257 -31748313 - LTR1 LTR ERV1 -2 783 226 1075 173 102 12 chr21 13159970 13160225 -31747345 - LTR1 LTR ERV1 -507 278 1 741 250 40 24 chr21 13160777 13161029 -31746541 + MER31-int LTR ERV1 894 1149 -5182 2623 78 20 0 chr21 13161198 13161546 -31746024 + THE1A LTR MaLR 1 355 0 1390 208 21 86 chr21 13161820 13162139 -31745431 + MER31-int LTR ERV1 3330 3554 -1382 2418 179 0 9 chr21 13162139 13162575 -31744995 + L1PB4 LINE L1 5711 6142 -14 1390 208 21 86 chr21 13162575 13162749 -31744821 + MER31-int LTR ERV1 3554 3738 -1198 495 140 130 0 chr21 13162749 13162849 -31744721 - MSTD LTR MaLR 0 396 284 2149 136 21 24 chr21 13162854 13163230 -31744340 - THE1C LTR MaLR 0 375 1 7540 133 9 22 chr21 13163230 13164399 -31743171 - THE1C-int LTR MaLR 0 1580 427 1320 150 59 66 chr21 13164405 13164692 -31742878 + THE1C LTR MaLR 86 370 -5 273 179 68 86 chr21 13164883 13165000 -31742570 + MER34C LTR ERV1 466 580 -5 6923 54 14 1 chr21 13165920 13166988 -31740582 + L1PA7 LINE L1 5073 6152 -2 185 280 0 0 chr21 13167036 13167086 -31740484 + L2 LINE L2 3262 3311 -2 201 355 141 37 chr21 13167236 13167484 -31740086 + L2 LINE L2 1575 1796 -1518 2111 130 3 0 chr21 13167484 13167783 -31739787 - AluSp SINE Alu -13 300 1 201 355 141 37 chr21 13167783 13168243 -31739327 + L2 LINE L2 1796 2357 -957 267 333 101 14 chr21 13168543 13168681 -31738889 - L2 LINE L2 0 3313 3164 3414 138 23 0 chr21 13168832 13169399 -31738171 - L1PA16 LINE L1 -2 6164 5585 432 292 143 34 chr21 13169760 13169969 -31737601 - MIR SINE MIR -12 250 19 1115 176 286 12 chr21 13170867 13171221 -31736349 + MSTB LTR MaLR 1 426 0 2007 161 51 108 chr21 13171223 13171731 -31735839 + MLT1D LTR MaLR 23 501 -4 614 309 48 27 chr21 13171741 13172071 -31735499 - MLT1I LTR MaLR -61 348 12 1975 244 70 28 chr21 13172775 13173344 -31734226 + MLT1E LTR MaLR 1 593 0 195 277 0 0 chr21 13175073 13175120 -31732450 + MIR3 SINE MIR 118 164 -44 619 267 140 49 chr21 13175121 13175428 -31732142 - MLT1H LTR MaLR 0 549 215 1831 196 37 3 chr21 13176837 13177190 -31730380 - MLT1A1 LTR MaLR 0 365 1 2655 90 3 0 chr21 13177441 13177795 -31729775 - THE1A LTR MaLR 0 355 1 11101 113 2 6 chr21 13177805 13179390 -31728180 - THE1A-int LTR MaLR 0 1580 1 2728 80 8 0 chr21 13179390 13179742 -31727828 - THE1A LTR MaLR 0 355 1 25 0 0 0 chr21 13180735 13180760 -31726810 + AT_rich Low_complexity Low_complexity 1 25 0 1394 160 188 14 chr21 13183304 13183591 -31723979 - MER7A DNA MER2_type 0 346 12 184 318 68 0 chr21 13183809 13183897 -31723673 + L2 LINE L2 1881 1974 -1340 1922 221 31 15 chr21 13183898 13184356 -31723214 + MLT1C LTR MaLR 1 465 -2 1475 203 3 17 chr21 13184501 13184802 -31722768 - AluJo SINE Alu -15 297 1 506 299 56 5 chr21 13185052 13185249 -31722321 + L1ME LINE L1 5483 5689 -432 354 200 67 0 chr21 13185550 13185625 -31721945 - MER33 DNA MER1_type -244 80 1 2181 98 3 10 chr21 13185705 13186000 -31721570 + AluSx SINE Alu 1 293 -19 221 130 43 0 chr21 13187139 13187185 -31720385 + GA-rich Low_complexity Low_complexity 3 50 0 772 212 62 112 chr21 13189323 13189440 -31718130 - MLT1J1 LTR MaLR 0 446 325 324 0 0 0 chr21 13189440 13189476 -31718094 + (TG)n Simple_repeat Simple_repeat 2 37 0 772 212 62 112 chr21 13189476 13189777 -31717793 - MLT1J1 LTR MaLR -121 325 49 262 170 62 10 chr21 13190035 13190334 -31717236 + (TA)n Simple_repeat Simple_repeat 1 314 0 187 160 48 16 chr21 13190348 13190401 -31717169 + (TA)n Simple_repeat Simple_repeat 2 52 -78 2245 118 0 0 chr21 13190401 13190706 -31716864 + AluSc SINE Alu 1 305 -4 187 160 48 16 chr21 13190706 13190777 -31716793 + (TA)n Simple_repeat Simple_repeat 52 130 0 27 49 0 0 chr21 13193268 13193309 -31714261 + AT_rich Low_complexity Low_complexity 1 41 0 195 42 0 0 chr21 13194757 13194781 -31712789 + (A)n Simple_repeat Simple_repeat 1 24 0 368 325 20 66 chr21 13194854 13195051 -31712519 - MIR3 SINE MIR -2 206 19 365 289 70 0 chr21 13195202 13195330 -31712240 + MIR3 SINE MIR 65 201 -7 1733 135 126 33 chr21 13196231 13196564 -31711006 - THE1B LTR MaLR 0 364 1 442 265 22 44 chr21 13198317 13198498 -31709072 - MER5B DNA MER1_type -1 177 1 1457 137 47 94 chr21 13198882 13199223 -31708347 + AluSq SINE Alu 1 327 0 866 212 6 6 chr21 13199227 13199392 -31708178 + FRAM SINE Alu 1 164 -12 2354 143 0 14 chr21 13199507 13199877 -31707693 - MLT1A1 LTR MaLR 0 365 1 219 373 64 18 chr21 13199894 13200004 -31707566 + L2 LINE L2 3158 3272 0 2153 127 3 13 chr21 13200431 13200747 -31706823 + AluSq SINE Alu 1 313 0 222 353 0 12 chr21 13200821 13200906 -31706664 - MIR3 SINE MIR -1 207 124 427 295 34 75 chr21 13201384 13201652 -31705918 + MIR SINE MIR 6 262 0 23 0 0 0 chr21 13202366 13202389 -31705181 + AT_rich Low_complexity Low_complexity 1 23 0 2947 6 0 0 chr21 13202455 13202773 -31704797 + AluYb8 SINE Alu 1 318 0 1414 209 136 15 chr21 13202854 13203184 -31704386 + MLT1A2 LTR MaLR 1 370 -4 29 28 0 0 chr21 13203639 13203675 -31703895 + AT_rich Low_complexity Low_complexity 1 36 0 380 275 104 85 chr21 13204422 13204633 -31702937 - MIR SINE MIR 0 262 48 1587 65 97 0 chr21 13204982 13205199 -31702371 - AluSg SINE Alu -72 238 1 217 0 29 29 chr21 13205621 13205655 -31701915 + (TTTTG)n Simple_repeat Simple_repeat 3 36 0 320 250 12 0 chr21 13206142 13206226 -31701344 - MIR SINE MIR 0 262 178 1594 162 48 101 chr21 13207570 13207945 -31699625 + MLT2C1 LTR ERVL 1 355 -42 4200 132 50 8 chr21 13207945 13208666 -31698904 - Tigger3(Golem) DNA MER2_type -1 3028 2278 507 214 10 10 chr21 13208657 13208760 -31698810 - Tigger3(Golem) DNA MER2_type -2921 108 6 * 46 54 0 0 chr21 13208849 13208923 -31698647 + AT_rich Low_complexity Low_complexity 1 74 0 391 225 53 0 chr21 13208929 13209098 -31698472 + (TA)n Simple_repeat Simple_repeat 2 179 0 36 53 0 0 chr21 13209102 13209159 -31698411 + AT_rich Low_complexity Low_complexity 1 57 0 342 248 43 4 chr21 13209161 13209441 -31698129 + (TA)n Simple_repeat Simple_repeat 1 291 0 310 253 47 0 chr21 13209453 13209623 -31697947 + (TA)n Simple_repeat Simple_repeat 1 178 0 459 220 42 0 chr21 13209637 13209805 -31697765 + (TA)n Simple_repeat Simple_repeat 1 175 0 501 273 43 16 chr21 13209828 13210073 -31697497 - LTR33 LTR ERVL -7 514 262 1838 128 3 18 chr21 13210281 13210563 -31697007 + AluJb SINE Alu 35 312 0 294 73 0 0 chr21 13211522 13211563 -31696007 + (TG)n Simple_repeat Simple_repeat 1 41 0 928 259 13 0 chr21 13212275 13212507 -31695063 + MIR SINE MIR 28 262 0 508 275 53 8 chr21 13213759 13213890 -31693680 + L2 LINE L2 3175 3311 -2 329 286 0 0 chr21 13214681 13214751 -31692819 + L2 LINE L2 3243 3312 -1 733 52 0 0 chr21 13214953 13215049 -31692521 - AluY SINE Alu -3 308 213 2393 73 0 0 chr21 13215470 13215772 -31691798 + AluY SINE Alu 1 302 -9 417 345 71 12 chr21 13215927 13216095 -31691475 + MIR3 SINE MIR 10 187 -21 459 321 73 37 chr21 13216116 13216362 -31691208 + MIR SINE MIR 2 256 -6 2168 121 0 32 chr21 13216790 13217103 -31690467 + AluSx SINE Alu 1 303 -9 23 0 0 0 chr21 13217459 13217482 -31690088 + AT_rich Low_complexity Low_complexity 1 23 0 1695 184 0 7 chr21 13218118 13218426 -31689144 + AluJb SINE Alu 1 306 0 2030 123 0 3 chr21 13220441 13220733 -31686837 + AluSc SINE Alu 1 291 -18 19966 159 15 23 chr21 13221911 13223815 -31683755 - L1MA3 LINE L1 -7 7717 5800 2167 85 0 0 chr21 13223815 13224127 -31683443 - AluY SINE Alu 0 312 1 19966 159 15 23 chr21 13224127 13226890 -31680680 - L1MA3 LINE L1 -1924 5800 3017 1042 140 83 184 chr21 13226890 13227226 -31680344 - AluSx SINE Alu 0 302 1 19966 159 15 23 chr21 13227226 13228103 -31679467 - L1MA3 LINE L1 -4707 3017 2135 1659 196 6 19 chr21 13228103 13228415 -31679155 - AluJb SINE Alu 0 312 5 19966 159 15 23 chr21 13228415 13230449 -31677121 - L1MA3 LINE L1 -5589 2135 195 908 116 0 0 chr21 13230450 13230588 -31676982 + L1P LINE L1 3675 3812 -2334 955 74 0 20 chr21 13230605 13230753 -31676817 - L1P LINE L1 -1429 4717 4573 2490 66 0 0 chr21 13230754 13231073 -31676497 + L1PA7 LINE L1 5828 6146 -8 1059 151 26 0 chr21 13231087 13231279 -31676291 - L1MA3 LINE L1 -7357 208 12 671 319 15 8 chr21 13231759 13232025 -31675545 - MARNA DNA Mariner -62 524 257 342 43 0 0 chr21 13232158 13232205 -31675365 - MADE1 DNA Mariner 0 80 34 35 83 0 0 chr21 13232520 13232604 -31674966 + AT_rich Low_complexity Low_complexity 1 84 0 24 32 0 0 chr21 13232642 13232673 -31674897 + AT_rich Low_complexity Low_complexity 1 31 0 711 184 31 117 chr21 13233284 13233507 -31674063 - MER20 DNA MER1_type -1 218 15 2487 231 83 60 chr21 13236615 13237784 -31669786 - L1ME2 LINE L1 -1 6958 5735 2128 113 0 19 chr21 13237784 13238102 -31669468 - AluSx SINE Alu 0 312 1 2487 231 83 60 chr21 13238102 13238395 -31669175 - L1ME2 LINE L1 -1224 5735 5450 865 221 55 58 chr21 13238417 13238598 -31668972 - L1ME2 LINE L1 -1726 5215 5034 2497 62 0 7 chr21 13238598 13238903 -31668667 - AluY SINE Alu -8 303 1 865 221 55 58 chr21 13238903 13239047 -31668523 - L1ME2 LINE L1 -1907 5034 4891 1099 312 64 20 chr21 13239058 13240037 -31667533 - L1ME2 LINE L1 -4579 2543 1317 205 127 73 0 chr21 13240037 13240092 -31667478 + (TTATA)n Simple_repeat Simple_repeat 1 59 0 289 324 14 32 chr21 13240103 13240140 -31667430 - L1ME2 LINE L1 -5081 1342 1306 316 23 0 93 chr21 13240140 13240226 -31667344 + (TTTA)n Simple_repeat Simple_repeat 3 80 0 289 324 14 32 chr21 13240226 13240407 -31667163 - L1ME2 LINE L1 -5117 1306 1128 463 286 87 45 chr21 13242765 13243320 -31664250 + HAL1 LINE L1 1080 1657 -850 41126 31 21 1 chr21 13244785 13250816 -31656754 + L1PA2 LINE L1 1 6155 0 356 253 46 0 chr21 13251462 13251549 -31656021 - MIR SINE MIR -6 256 166 21 0 0 0 chr21 13251559 13251580 -31655990 + AT_rich Low_complexity Low_complexity 1 21 0 38937 62 13 0 chr21 13251580 13257654 -31649916 - L1PA5 LINE L1 -3 6151 1 1979 141 10 13 chr21 13257658 13257964 -31649606 - AluSx SINE Alu -7 305 1 499 312 14 0 chr21 13257965 13258103 -31649467 - MIR SINE MIR -112 150 11 375 276 129 9 chr21 13258527 13258643 -31648927 + MIR3 SINE MIR 9 138 -70 2462 43 40 10 chr21 13259438 13259740 -31647830 - AluY SINE Alu 0 311 1 458 52 0 0 chr21 13259778 13259836 -31647734 - MER72 LTR ERV1 -30 692 635 445 293 9 17 chr21 13260416 13260532 -31647038 - MIR3 SINE MIR -48 160 46 902 281 94 50 chr21 13262495 13262608 -31644962 + L2 LINE L2 1852 1959 -1355 3161 191 56 60 chr21 13262608 13263503 -31644067 + MER97a DNA MER1_type 2 892 -2 902 281 94 50 chr21 13263503 13263891 -31643679 + L2 LINE L2 1959 2375 -939 224 381 24 0 chr21 13264069 13264153 -31643417 + L2 LINE L2 2670 2755 -559 2125 111 0 14 chr21 13264259 13264586 -31642984 + AluSx SINE Alu 1 323 0 365 342 93 34 chr21 13264653 13264890 -31642680 + L2 LINE L2 3022 3272 0 369 0 0 0 chr21 13266031 13266072 -31641498 + (TG)n Simple_repeat Simple_repeat 2 42 0 1788 214 72 35 chr21 13266313 13266800 -31640770 - MLT1D LTR MaLR 0 505 1 509 269 31 43 chr21 13267129 13267377 -31640193 + L1ME4a LINE L1 5635 5881 -240 * 724 266 145 17 chr21 13267372 13267824 -31639746 - MLT1G3 LTR MaLR -51 544 1 26 30 0 0 chr21 13267928 13267961 -31639609 + AT_rich Low_complexity Low_complexity 1 33 0 256 325 169 7 chr21 13268117 13268271 -31639299 - MIR SINE MIR -55 207 29 680 311 4 9 chr21 13269539 13269764 -31637806 + MLT1I LTR MaLR 166 389 -20 455 286 54 47 chr21 13269870 13270167 -31637403 + L1MB2 LINE L1 5630 5928 -243 * 2804 175 98 10 chr21 13269905 13270510 -31637060 + L1MC2 LINE L1 5661 6318 -26 2716 252 42 13 chr21 13271000 13271080 -31636490 + L1M4b LINE L1 29 105 -6754 2060 136 3 7 chr21 13271080 13271388 -31636182 + AluSx SINE Alu 1 307 -5 2716 252 42 13 chr21 13271388 13271978 -31635592 + L1M4b LINE L1 105 718 -6141 949 122 0 0 chr21 13272818 13272966 -31634604 + AluSg/x SINE Alu 165 312 0 277 307 29 44 chr21 13273136 13273273 -31634297 - L2 LINE L2 -221 3051 2917 201 298 0 0 chr21 13274101 13274148 -31633422 - L2 LINE L2 0 3272 3226 1153 116 0 3 chr21 13274158 13274390 -31633180 + AluSx SINE Alu 11 301 -9 207 333 69 50 chr21 13274562 13274721 -31632849 - L2 LINE L2 -221 3051 2890 286 333 113 12 chr21 13275067 13275235 -31632335 - L2 LINE L2 -552 2762 2578 379 35 35 0 chr21 13279702 13279759 -31627811 + (TA)n Simple_repeat Simple_repeat 1 59 0 481 241 68 56 chr21 13281323 13281485 -31626085 - MER5A DNA MER1_type -3 186 23 278 211 13 40 chr21 13287710 13287786 -31619784 + MLT1L LTR MaLR 16 89 -526 487 220 25 8 chr21 13287818 13287936 -31619634 + MER104 DNA Tc2 56 175 -5 2231 120 0 0 chr21 13287970 13288271 -31619299 + AluSx SINE Alu 1 301 -11 2082 132 60 3 chr21 13290366 13290685 -31616885 - MER1B DNA MER1_type 0 337 1 1759 169 0 32 chr21 13291385 13291693 -31615877 - AluJb SINE Alu -14 298 1 3051 180 55 53 chr21 13291718 13292534 -31615036 - Looper DNA T2_type 0 1558 741 1619 183 0 18 chr21 13292534 13292818 -31614752 + AluJb SINE Alu 1 279 -33 1679 181 104 126 chr21 13292857 13293181 -31614389 - Looper DNA T2_type -806 752 422 789 198 12 58 chr21 13293181 13293353 -31614217 + FRAM SINE Alu 1 164 -2 1679 181 104 126 chr21 13293353 13293797 -31613773 - Looper DNA T2_type -1136 422 1 944 98 0 0 chr21 13297407 13297530 -31610040 - AluSg1 SINE Alu -186 123 1 21 0 0 0 chr21 13297899 13297920 -31609650 + AT_rich Low_complexity Low_complexity 1 21 0 1839 117 61 0 chr21 13297925 13298223 -31609347 + AluSg SINE Alu 1 314 0 1865 159 10 3 chr21 13299569 13299865 -31607705 - AluJb SINE Alu -12 300 3 22 0 0 0 chr21 13299970 13299992 -31607578 + AT_rich Low_complexity Low_complexity 1 22 0 335 306 31 103 chr21 13300202 13300363 -31607207 + L2 LINE L2 2982 3118 -154 12099 129 58 67 chr21 13300363 13302799 -31604771 + Tigger1 DNA MER2_type 5 2418 0 335 306 31 103 chr21 13302799 13302898 -31604672 + L2 LINE L2 3118 3223 -49 588 149 0 0 chr21 13303211 13303298 -31604272 - AluS SINE Alu -224 88 2 22 0 0 0 chr21 13303715 13303737 -31603833 + AT_rich Low_complexity Low_complexity 1 22 0 366 325 49 43 chr21 13304665 13304828 -31602742 - L3 LINE CR1 0 1577 1414 348 289 113 29 chr21 13304829 13305033 -31602537 + MIR SINE MIR 32 252 -10 236 325 125 31 chr21 13305056 13305216 -31602354 - L3 LINE CR1 -196 1381 1207 708 250 154 9 chr21 13305806 13306026 -31601544 + MIR SINE MIR 8 259 -3 500 44 0 15 chr21 13306139 13306207 -31601363 + (TAGA)n Simple_repeat Simple_repeat 1 67 0 234 191 0 0 chr21 13306207 13306254 -31601316 + (TA)n Simple_repeat Simple_repeat 1 47 0 219 69 0 0 chr21 13306652 13306681 -31600889 + (GGAGA)n Simple_repeat Simple_repeat 4 32 0 242 234 25 67 chr21 13306975 13307093 -31600477 - MIR SINE MIR -61 147 33 1533 160 10 41 chr21 13309773 13310066 -31597504 - AluJo SINE Alu -27 285 2 1236 142 9 24 chr21 13311303 13311514 -31596056 + AluJo SINE Alu 86 293 -19 2034 103 0 0 chr21 13311863 13312124 -31595446 - AluSx SINE Alu -31 281 21 282 308 69 30 chr21 13312894 13313064 -31594506 + MIR SINE MIR 10 186 -59 258 32 0 0 chr21 13313477 13313508 -31594062 + (TG)n Simple_repeat Simple_repeat 2 32 0 555 304 64 95 chr21 13313508 13313748 -31593822 + L2 LINE L2 2611 2857 -456 827 206 120 17 chr21 13313748 13314040 -31593530 - MER33 DNA MER1_type -2 322 1 555 304 64 95 chr21 13314040 13314421 -31593149 + L2 LINE L2 2857 3238 -75 35 0 0 0 chr21 13314552 13314587 -31592983 + AT_rich Low_complexity Low_complexity 1 35 0 250 176 24 0 chr21 13315406 13315491 -31592079 + (TA)n Simple_repeat Simple_repeat 2 88 0 479 263 25 0 chr21 13315492 13315610 -31591960 - MIR SINE MIR -47 215 95 2402 156 35 9 chr21 13316271 13316694 -31590876 + Tigger2a DNA MER2_type 1 434 0 1350 193 110 0 chr21 13316742 13316996 -31590574 - AluJo SINE Alu -30 282 1 237 410 49 0 chr21 13317283 13317427 -31590143 + MIR3 SINE MIR 34 184 -24 442 276 41 0 chr21 13318057 13318155 -31589415 - L2 LINE L2 0 3272 3171 231 88 0 0 chr21 13320193 13320227 -31587343 + (CA)n Simple_repeat Simple_repeat 2 35 0 647 241 53 0 chr21 13326460 13326630 -31580940 + Charlie1 DNA MER1_type 1 179 -2582 653 202 16 0 chr21 13326655 13326784 -31580786 + Charlie1 DNA MER1_type 2631 2761 0 213 303 165 37 chr21 13327028 13327137 -31580433 - L2 LINE L2 -13 3259 3137 257 253 86 65 chr21 13327420 13327665 -31579905 + MER5C DNA MER1_type 74 323 -1 192 328 136 34 chr21 13328391 13328568 -31579002 - L2 LINE L2 -575 2739 2545 2417 52 0 0 chr21 13328918 13329206 -31578364 - AluY SINE Alu -21 290 3 26 30 0 0 chr21 13329217 13329250 -31578320 + AT_rich Low_complexity Low_complexity 1 33 0 265 108 0 0 chr21 13329947 13329984 -31577586 - MER103 DNA DNA -126 40 4 2215 112 7 0 chr21 13330167 13330470 -31577100 - AluSg SINE Alu -5 305 1 224 354 77 22 chr21 13331789 13331970 -31575600 + L2 LINE L2 3115 3305 -8 21 57 0 0 chr21 13332491 13332526 -31575044 + AT_rich Low_complexity Low_complexity 1 35 0 1216 223 25 39 chr21 13332660 13333015 -31574555 + L1ME1 LINE L1 5664 6013 -153 577 161 45 0 chr21 13333018 13333130 -31574440 + L1MA10 LINE L1 6209 6325 -9 476 247 68 56 chr21 13333137 13333477 -31574093 + L1ME4a LINE L1 5589 5932 -189 2262 93 7 3 chr21 13334322 13334755 -31572815 + AluY SINE Alu 1 434 0 832 148 0 8 chr21 13334948 13335076 -31572494 - FLAM_A SINE Alu -6 127 1 608 276 143 0 chr21 13335185 13335381 -31572189 - MIR SINE MIR 0 262 39 308 223 54 47 chr21 13335821 13335969 -31571601 + L1ME4a LINE L1 5745 5893 -228 485 304 282 17 chr21 13336009 13336364 -31571206 - L2 LINE L2 -41 3272 2824 682 210 78 47 chr21 13336559 13336816 -31570754 - L1M4 LINE L1 -2008 4138 3874 44 20 0 0 chr21 13336838 13336889 -31570681 + AT_rich Low_complexity Low_complexity 1 51 0 553 216 224 28 chr21 13336913 13337191 -31570379 + L1ME1 LINE L1 4004 4334 -1812 2336 113 3 0 chr21 13337196 13337507 -31570063 - AluSx SINE Alu 0 312 1 382 151 0 3 chr21 13337588 13337659 -31569911 + AluJ/FLAM SINE Alu 2 58 -244 2376 225 89 46 chr21 13337660 13339298 -31568272 + L1ME1 LINE L1 4442 6161 -5 21 82 0 0 chr21 13339310 13339359 -31568211 + AT_rich Low_complexity Low_complexity 1 49 0 6161 99 23 2 chr21 13339382 13340282 -31567288 + L1PA11 LINE L1 5254 6172 -2 1936 183 54 17 chr21 13340413 13340965 -31566605 + L1MB8 LINE L1 5526 6176 -2 779 303 121 28 chr21 13341128 13341942 -31565628 + L1ME LINE L1 4317 5200 -946 2040 93 37 0 chr21 13341985 13342254 -31565316 + AluSq SINE Alu 6 284 -29 363 23 0 0 chr21 13342287 13342331 -31565239 + (TG)n Simple_repeat Simple_repeat 2 45 0 26 0 0 0 chr21 13342504 13342530 -31565040 + AT_rich Low_complexity Low_complexity 1 26 0 474 245 36 7 chr21 13342566 13342705 -31564865 + L1ME LINE L1 5321 5463 -707 369 217 101 16 chr21 13342951 13343080 -31564490 + L1MC4a LINE L1 6443 6582 -1226 2038 238 64 14 chr21 13343089 13343831 -31563739 + L1MC4 LINE L1 6927 7864 -178 812 282 81 16 chr21 13343883 13344320 -31563250 + L1ME3A LINE L1 5254 5724 -446 209 297 0 0 chr21 13344320 13344384 -31563186 + (TA)n Simple_repeat Simple_repeat 2 65 0 212 0 0 35 chr21 13344386 13344415 -31563155 + (CAAAA)n Simple_repeat Simple_repeat 2 29 0 336 289 118 5 chr21 13344433 13344575 -31562995 + L1ME3A LINE L1 5735 5887 -275 1199 85 40 0 chr21 13344578 13344755 -31562815 + L1MA1 LINE L1 6118 6301 -1 1226 249 194 33 chr21 13346570 13347385 -31560185 + L2 LINE L2 2277 3296 -17 712 174 38 0 chr21 13347406 13347538 -31560032 + FRAM SINE Alu 17 153 -23 213 39 0 0 chr21 13347541 13347567 -31560003 + (TAAA)n Simple_repeat Simple_repeat 2 27 0 400 273 144 21 chr21 13347852 13348046 -31559524 + MLT1L LTR MaLR 371 588 -27 267 238 16 0 chr21 13348409 13348472 -31559098 + GA-rich Low_complexity Low_complexity 3 66 0 2474 67 0 0 chr21 13350665 13350963 -31556607 + AluY SINE Alu 3 300 -11 669 216 72 41 chr21 13350967 13351161 -31556409 - MIR SINE MIR -24 238 39 320 243 287 7 chr21 13351405 13351541 -31556029 - MIR SINE MIR -59 203 30 28 0 0 0 chr21 13352511 13352539 -31555031 + AT_rich Low_complexity Low_complexity 1 28 0 362 302 129 30 chr21 13352672 13352874 -31554696 - MIR SINE MIR -40 222 1 24 0 0 0 chr21 13352935 13352959 -31554611 + AT_rich Low_complexity Low_complexity 1 24 0 2178 82 0 4 chr21 13353276 13353557 -31554013 - AluSg SINE Alu -12 298 19 367 294 61 78 chr21 13356612 13356843 -31550727 - L2 LINE L2 -71 3242 3016 256 243 171 0 chr21 13356829 13356899 -31550671 - L2 LINE L2 -511 2803 2722 * 362 222 206 16 chr21 13357122 13357248 -31550322 + MER46C DNA MER2_type 1 150 -188 1110 163 71 77 chr21 13357795 13358121 -31549449 + MER33 DNA MER1_type 1 324 0 1047 231 70 28 chr21 13358661 13359110 -31548460 + L1ME3 LINE L1 5585 6041 -129 25 65 0 0 chr21 13359563 13359609 -31547961 + AT_rich Low_complexity Low_complexity 1 46 0 1956 164 25 8 chr21 13360184 13360543 -31547027 + MLT1A1 LTR MaLR 1 365 0 2242 102 0 0 chr21 13361534 13361838 -31545732 - AluSx SINE Alu -8 304 1 273 294 0 15 chr21 13362583 13362651 -31544919 + L2 LINE L2 3206 3272 0 11543 128 10 2 chr21 13363003 13364758 -31542812 - Tigger1 DNA MER2_type -1 2417 650 2318 82 17 94 chr21 13364758 13364979 -31542591 - THE1C LTR MaLR -2 373 195 2304 68 3 0 chr21 13364979 13365272 -31542298 + AluY SINE Alu 1 294 -17 2318 82 17 94 chr21 13365272 13365454 -31542116 - THE1C LTR MaLR -180 195 1 * 3891 134 53 6 chr21 13365454 13366086 -31541484 - Tigger1 DNA MER2_type -1755 663 2 767 211 156 41 chr21 13368396 13368666 -31538904 + MER74B LTR ERVL 56 356 -266 524 253 50 45 chr21 13368729 13368927 -31538643 + MER74B LTR ERVL 350 548 -74 249 258 114 18 chr21 13368788 13368955 -31538615 - MER88 LTR ERVL -218 246 64 * 183 80 0 0 chr21 13368992 13369017 -31538553 + (TG)n Simple_repeat Simple_repeat 2 26 0 218 309 48 56 chr21 13369850 13369976 -31537594 - MIR SINE MIR -62 146 22 213 315 41 0 chr21 13372454 13372527 -31535043 - L2 LINE L2 -8 3264 3189 278 326 11 11 chr21 13373467 13373562 -31534008 + MIR SINE MIR 58 152 -110 226 269 0 43 chr21 13373657 13373750 -31533820 + A-rich Low_complexity Low_complexity 2 90 0 420 284 19 45 chr21 13375444 13375599 -31531971 + MIR SINE MIR 80 230 -32 206 323 121 32 chr21 13375795 13375919 -31531651 - MIR3 SINE MIR -20 188 54 222 118 0 0 chr21 13377245 13377279 -31530291 + (GGGA)n Simple_repeat Simple_repeat 4 37 0 373 331 61 81 chr21 13382111 13382799 -31524771 + L1M2 LINE L1 564 1237 -5612 258 384 8 30 chr21 13385883 13386016 -31521554 + L2 LINE L2 3127 3256 -16 195 410 14 14 chr21 13386084 13386228 -31521342 - L2 LINE L2 -213 3059 2916 1257 178 56 44 chr21 13386383 13386703 -31520867 - MER33 DNA MER1_type 0 324 1 252 0 0 0 chr21 13388025 13388053 -31519517 + (CA)n Simple_repeat Simple_repeat 2 29 0 2380 169 45 13 chr21 13388061 13388698 -31518872 + L1M4 LINE L1 4876 5530 -644 2459 203 91 0 chr21 13388710 13389218 -31518352 - MLT1F1 LTR MaLR -13 554 1 207 0 0 0 chr21 13390671 13390694 -31516876 + (TG)n Simple_repeat Simple_repeat 2 24 0 265 325 12 0 chr21 13390963 13391043 -31516527 - LTR67 LTR ERVL -363 194 114 2347 175 28 0 chr21 13391296 13391695 -31515875 - MSTB2 LTR MaLR 0 457 48 679 91 9 9 chr21 13391695 13391805 -31515765 + (TTCTC)n Simple_repeat Simple_repeat 3 112 0 1792 174 17 7 chr21 13391810 13392108 -31515462 - AluJb SINE Alu -11 301 1 413 109 0 31 chr21 13392108 13392172 -31515398 - MSTB2 LTR MaLR -395 62 1 182 269 29 67 chr21 13393247 13393351 -31514219 - L2 LINE L2 0 3313 3214 1399 188 37 51 chr21 13394015 13394425 -31513145 - HsTC2 DNA Tc2 -36 1862 1283 207 0 0 0 chr21 13396591 13396614 -31510956 + (CA)n Simple_repeat Simple_repeat 2 24 0 297 267 56 11 chr21 13397635 13397725 -31509845 + L2 LINE L2 3177 3270 -2 553 326 129 4 chr21 13397727 13397960 -31509610 - MIR SINE MIR 0 262 1 689 292 59 92 chr21 13399193 13399772 -31507798 - MLT1K LTR MaLR -2 586 27 22 0 0 0 chr21 13400241 13400263 -31507307 + AT_rich Low_complexity Low_complexity 1 22 0 265 362 29 0 chr21 13401321 13401426 -31506144 + L2 LINE L2 2430 2537 -777 366 235 12 0 chr21 13401465 13401550 -31506020 + MLT1F1 LTR MaLR 482 567 0 383 298 139 34 chr21 13401760 13402091 -31505479 + L1MC4a LINE L1 5531 5788 -333 191 311 0 0 chr21 13402111 13402172 -31505398 - MIR SINE MIR -14 248 188 324 0 0 0 chr21 13402193 13402229 -31505341 + (TG)n Simple_repeat Simple_repeat 2 37 0 180 290 86 21 chr21 13403731 13403824 -31503746 - MIR SINE MIR -85 123 25 207 0 0 0 chr21 13405001 13405024 -31502546 + (A)n Simple_repeat Simple_repeat 1 23 0 249 260 30 60 chr21 13405607 13405707 -31501863 + MIR3 SINE MIR 107 203 -5 1886 103 127 24 chr21 13406732 13407072 -31500498 + THE1C LTR MaLR 1 375 0 200 224 52 0 chr21 13407242 13407300 -31500270 + (TATATG)n Simple_repeat Simple_repeat 4 64 0 189 0 0 0 chr21 13407897 13407918 -31499652 + (TA)n Simple_repeat Simple_repeat 2 22 0 285 350 64 0 chr21 13408080 13408220 -31499350 + L1ME3 LINE L1 5493 5641 -521 248 200 9 45 chr21 13408270 13408380 -31499190 + A-rich Low_complexity Low_complexity 6 111 0 369 333 51 9 chr21 13408380 13408596 -31498974 + L1ME3 LINE L1 5716 5940 -222 285 276 10 10 chr21 13408734 13408832 -31498738 + L1MC4 LINE L1 7929 8026 -16 401 211 183 100 chr21 13409289 13409633 -31497937 + L1ME4a LINE L1 5461 5775 -346 1534 187 10 27 chr21 13409633 13409927 -31497643 + AluJo SINE Alu 1 289 -23 401 211 183 100 chr21 13409927 13410171 -31497399 + L1ME4a LINE L1 5775 6100 -21 422 217 142 17 chr21 13410611 13410731 -31496839 + L2 LINE L2 3138 3272 0 460 250 51 28 chr21 13411341 13411517 -31496053 + L3b LINE CR1 1107 1286 -297 316 310 0 0 chr21 13412294 13412407 -31495163 + MER103 DNA DNA 2 114 -52 252 303 12 0 chr21 13414941 13415042 -31492528 + L1M4 LINE L1 5506 5607 -555 1776 147 24 7 chr21 13415166 13415459 -31492111 + AluSx SINE Alu 1 298 -14 24 67 0 0 chr21 13415627 13415672 -31491898 + AT_rich Low_complexity Low_complexity 1 45 0 223 186 0 0 chr21 13415791 13415834 -31491736 + T-rich Low_complexity Low_complexity 1 43 0 1934 233 40 13 chr21 13417429 13417906 -31489664 - MLT1E2 LTR MaLR 0 626 137 279 0 0 0 chr21 13418030 13418061 -31489509 + (CTA)n Simple_repeat Simple_repeat 3 33 0 564 281 99 18 chr21 13418062 13418283 -31489287 - MIR SINE MIR -6 256 18 2581 61 0 0 chr21 13419830 13420141 -31487429 + AluY SINE Alu 1 311 0 659 201 91 41 chr21 13422325 13422544 -31485026 + MIR SINE MIR 33 262 0 279 182 273 0 chr21 13422774 13422840 -31484730 - L2 LINE L2 0 3313 3230 851 114 0 30 chr21 13423829 13423960 -31483610 - AluJb SINE Alu -185 127 1 387 0 0 0 chr21 13424716 13424759 -31482811 + (TG)n Simple_repeat Simple_repeat 1 43 0 295 303 0 0 chr21 13425357 13425433 -31482137 - L2 LINE L2 -9 3304 3229 1996 213 61 49 chr21 13425687 13425896 -31481674 - L1MD2 LINE L1 -12 6347 6142 360 64 0 0 chr21 13425896 13425943 -31481627 + (TG)n Simple_repeat Simple_repeat 2 48 0 1996 213 61 49 chr21 13425943 13426386 -31481184 - L1MD2 LINE L1 -217 6142 5687 399 308 27 36 chr21 13427553 13427624 -31479946 + L1ME LINE L1 5527 5597 -524 2111 147 0 0 chr21 13427624 13427931 -31479639 - AluSx SINE Alu -5 307 1 399 308 27 36 chr21 13427931 13428080 -31479490 + L1ME LINE L1 5597 5745 -376 22 0 0 0 chr21 13428084 13428106 -31479464 + AT_rich Low_complexity Low_complexity 1 22 0 24 0 0 0 chr21 13428778 13428802 -31478768 + AT_rich Low_complexity Low_complexity 1 24 0 1103 289 48 9 chr21 13428976 13429412 -31478158 + L1MC4a LINE L1 5452 5904 -1904 21 0 0 0 chr21 13432122 13432143 -31475427 + AT_rich Low_complexity Low_complexity 1 21 0 22 56 0 0 chr21 13432450 13432486 -31475084 + AT_rich Low_complexity Low_complexity 1 36 0 25 27 0 68 chr21 13432575 13432605 -31474965 + AT_rich Low_complexity Low_complexity 1 31 -37 1676 143 8 16 chr21 13432605 13432856 -31474714 + AluSx SINE Alu 37 285 -27 25 27 0 68 chr21 13432856 13432872 -31474698 + AT_rich Low_complexity Low_complexity 31 47 -21 189 0 0 0 chr21 13432872 13432893 -31474677 + (TG)n Simple_repeat Simple_repeat 2 22 0 25 27 0 68 chr21 13432893 13432918 -31474652 + AT_rich Low_complexity Low_complexity 47 68 0 263 191 15 0 chr21 13433008 13433076 -31474494 + GA-rich Low_complexity Low_complexity 3 71 0 2310 102 3 0 chr21 13434047 13434342 -31473228 + AluSp SINE Alu 1 296 -17 704 223 114 0 chr21 13434346 13434521 -31473049 + MLT1A1 LTR MaLR 165 359 -6 348 311 16 33 chr21 13434849 13434971 -31472599 - MIR3 SINE MIR -49 159 40 1721 185 0 17 chr21 13435399 13435691 -31471879 + AluJb SINE Alu 1 287 -25 1600 166 98 0 chr21 13436199 13436464 -31471106 + AluJb SINE Alu 1 291 -21 2104 91 0 0 chr21 13436471 13436734 -31470836 + AluSg SINE Alu 39 301 -9 527 43 14 0 chr21 13437977 13438047 -31469523 + (TCTA)n Simple_repeat Simple_repeat 3 73 0 213 288 50 0 chr21 13439059 13439139 -31468431 - L2 LINE L2 -3 3310 3227 426 330 36 13 chr21 13439259 13439483 -31468087 - L2 LINE L2 -1256 2058 1830 726 259 59 30 chr21 13440536 13440772 -31466798 + MIR SINE MIR 19 261 -1 205 220 99 33 chr21 13442088 13442179 -31465391 + MIR SINE MIR 63 159 -103 187 377 46 39 chr21 13443156 13443286 -31464284 + L2 LINE L2 3133 3263 -9 1941 137 3 0 chr21 13443524 13443808 -31463762 + AluSx SINE Alu 1 285 -27 21 57 0 0 chr21 13444351 13444386 -31463184 + AT_rich Low_complexity Low_complexity 1 35 0 214 171 0 0 chr21 13444663 13444698 -31462872 + GA-rich Low_complexity Low_complexity 4 38 0 294 73 0 0 chr21 13446011 13446052 -31461518 + (CA)n Simple_repeat Simple_repeat 2 42 0 487 313 0 0 chr21 13446416 13446531 -31461039 + MIR SINE MIR 2 116 -146 1629 144 45 27 chr21 13446544 13446836 -31460734 - THE1B LTR MaLR -67 297 1 181 297 109 0 chr21 13446851 13446915 -31460655 + MIR SINE MIR 160 230 -32 1044 143 5 16 chr21 13447530 13447719 -31459851 + MER20 DNA MER1_type 33 219 0 213 303 19 18 chr21 13447727 13447890 -31459680 - L2 LINE L2 -499 2815 2579 2192 167 32 41 chr21 13449934 13450370 -31457200 + MSTB1 LTR MaLR 1 432 0 469 333 212 10 chr21 13450492 13450798 -31456772 - L2 LINE L2 -20 3293 2926 2010 176 56 40 chr21 13450813 13451302 -31456268 - MLT1D LTR MaLR -4 563 4 182 140 0 20 chr21 13451693 13451743 -31455827 + (CAAAAA)n Simple_repeat Simple_repeat 6 54 0 291 263 220 22 chr21 13453773 13453910 -31453660 - MIR SINE MIR -36 172 11 189 262 0 0 chr21 13454194 13454236 -31453334 + L2 LINE L2 3213 3254 -18 1858 163 3 7 chr21 13454807 13455108 -31452462 + AluJb SINE Alu 1 300 -12 279 0 0 0 chr21 13455849 13455880 -31451690 + (TG)n Simple_repeat Simple_repeat 2 32 0 194 225 0 28 chr21 13456949 13457020 -31450550 + A-rich Low_complexity Low_complexity 2 70 0 207 320 0 13 chr21 13457906 13457984 -31449586 + A-rich Low_complexity Low_complexity 5 81 0 316 285 80 35 chr21 13459026 13459189 -31448381 - MIR SINE MIR -63 145 22 1759 142 0 74 chr21 13459678 13460015 -31447555 - AluJb SINE Alu 0 312 1 503 326 47 5 chr21 13460306 13460499 -31447071 - MIR SINE MIR -13 249 49 251 352 119 19 chr21 13460920 13461230 -31446340 + L2 LINE L2 2230 2570 -744 354 206 0 0 chr21 13461491 13461554 -31446016 + AluJ/FLAM SINE Alu 1 63 -239 1048 186 0 0 chr21 13461583 13461755 -31445815 + FAM SINE Alu 1 172 -3 690 243 62 55 chr21 13461787 13462059 -31445511 + Charlie8 DNA MER1_type 2 275 -2142 1852 169 52 72 chr21 13462069 13462406 -31445164 + L1MC3 LINE L1 7302 7644 -398 1971 147 4 0 chr21 13462406 13462685 -31444885 - AluSx SINE Alu -22 290 11 1852 169 52 72 chr21 13462685 13462819 -31444751 + L1MC3 LINE L1 7644 8037 -5 235 381 23 28 chr21 13463405 13463580 -31443990 - MIR SINE MIR -61 147 17 2349 55 10 0 chr21 13463880 13464173 -31443397 - AluY SINE Alu -15 296 1 344 80 0 0 chr21 13464175 13464225 -31443345 + MADE1 DNA Mariner 31 80 0 577 168 15 44 chr21 13466784 13466921 -31440649 - MER3 DNA MER1_type 0 209 77 1999 126 14 0 chr21 13468059 13468344 -31439226 - AluSx SINE Alu -11 301 13 844 249 28 0 chr21 13469563 13469776 -31437794 - MER20 DNA MER1_type 0 219 1 205 259 0 17 chr21 13470752 13470810 -31436760 + CT-rich Low_complexity Low_complexity 5 61 0 1465 306 30 69 chr21 13472179 13472602 -31434968 + MER115 DNA AcHobo 29 416 -277 2239 89 61 19 chr21 13472602 13472962 -31434608 - THE1C LTR MaLR 0 375 1 1465 306 30 69 chr21 13472962 13473230 -31434340 + MER115 DNA AcHobo 416 693 0 369 0 0 0 chr21 13473526 13473567 -31434003 + (CA)n Simple_repeat Simple_repeat 1 41 0 22 0 0 0 chr21 13473777 13473799 -31433771 + AT_rich Low_complexity Low_complexity 1 22 0 2111 127 41 36 chr21 13476494 13476856 -31430714 + THE1B LTR MaLR 1 364 0 181 315 101 11 chr21 13478078 13478167 -31429403 - MIR SINE MIR -78 184 88 398 211 13 0 chr21 13479272 13479348 -31428222 + L2 LINE L2 3195 3271 -42 2218 131 0 3 chr21 13479445 13479759 -31427811 - AluSq SINE Alu 0 313 1 2552 175 24 13 chr21 13479760 13480292 -31427278 + L1MB8 LINE L1 5631 6168 -10 187 266 114 38 chr21 13481267 13481346 -31426224 - L2 LINE L2 0 3313 3229 300 284 78 0 chr21 13481418 13481520 -31426050 - MIR SINE MIR -65 197 88 23 0 0 0 chr21 13481557 13481580 -31425990 + AT_rich Low_complexity Low_complexity 1 23 0 1704 231 21 21 chr21 13481580 13481742 -31425828 - L1MA9 LINE L1 -38 6274 6113 2321 83 3 0 chr21 13481742 13482044 -31425526 - AluY SINE Alu -8 303 1 1704 231 21 21 chr21 13482044 13482365 -31425205 - L1MA9 LINE L1 -198 6114 5791 251 279 240 0 chr21 13484247 13484351 -31423219 + L2 LINE L2 3182 3310 -3 244 241 25 51 chr21 13484644 13484723 -31422847 - MIR3 SINE MIR -127 81 5 5910 98 24 12 chr21 13485610 13486648 -31420922 + L1PA10 LINE L1 5116 6149 -19 189 0 0 0 chr21 13486648 13486669 -31420901 + (TTAAA)n Simple_repeat Simple_repeat 1 21 0 5910 98 24 12 chr21 13486669 13486687 -31420883 + L1PA10 LINE L1 6149 6165 -3 409 289 7 22 chr21 13486938 13487073 -31420497 - MLT1L LTR MaLR -362 253 121 21 0 0 0 chr21 13487224 13487245 -31420325 + AT_rich Low_complexity Low_complexity 1 21 0 1613 187 53 34 chr21 13487316 13487674 -31419896 - MLT1A1 LTR MaLR 0 365 1 198 0 0 0 chr21 13487787 13487809 -31419761 + (A)n Simple_repeat Simple_repeat 1 22 0 2187 110 0 7 chr21 13489954 13490253 -31417317 - AluSq SINE Alu -16 297 1 217 224 102 0 chr21 13490560 13490609 -31416961 + MIR3 SINE MIR 120 173 -35 1556 187 29 0 chr21 13491742 13492020 -31415550 - AluJb SINE Alu -26 286 1 1293 205 7 15 chr21 13492637 13492910 -31414660 + AluJo SINE Alu 37 307 -5 2340 95 0 7 chr21 13493254 13493560 -31414010 + AluSq SINE Alu 1 304 -9 307 298 202 0 chr21 13494003 13494117 -31413453 - MER5A DNA MER1_type 0 189 53 296 245 12 129 chr21 13494735 13494898 -31412672 + MIR3 SINE MIR 40 183 -25 2226 93 24 0 chr21 13495546 13495835 -31411735 - AluSx SINE Alu -16 296 1 2506 54 0 0 chr21 13497076 13497374 -31410196 + AluY SINE Alu 10 307 -4 253 197 99 0 chr21 13497995 13498066 -31409504 - MIR3 SINE MIR -30 178 101 2147 85 3 30 chr21 13498242 13498592 -31408978 - AluY SINE Alu 0 342 1 8682 85 7 13 chr21 13498601 13500600 -31406970 - L1PA7 LINE L1 -3 6151 4143 333 264 118 0 chr21 13500789 13500899 -31406671 - L2 LINE L2 -4 3268 3146 213 383 111 21 chr21 13502186 13502421 -31405149 + L2 LINE L2 3017 3272 0 317 318 130 5 chr21 13502763 13502951 -31404619 + MIR SINE MIR 34 252 -10 1449 201 28 17 chr21 13503289 13503643 -31403927 + MLT1A1 LTR MaLR 1 358 -7 22 0 0 0 chr21 13504582 13504604 -31402966 + AT_rich Low_complexity Low_complexity 1 22 0 21 0 0 0 chr21 13504638 13504659 -31402911 + AT_rich Low_complexity Low_complexity 1 21 0 2106 124 137 8 chr21 13505180 13505559 -31402011 - MSTA LTR MaLR 0 428 1 184 273 0 0 chr21 13505643 13505687 -31401883 - L2 LINE L2 -8 3264 3221 503 147 0 0 chr21 13505713 13505788 -31401782 + AluY SINE Alu 204 278 -33 189 358 97 15 chr21 13505921 13506055 -31401515 - L2 LINE L2 -220 3052 2908 212 395 18 9 chr21 13506124 13506238 -31401332 - L2 LINE L2 -553 2761 2647 388 291 81 35 chr21 13506245 13506417 -31401153 + L3 LINE CR1 351 530 -1047 239 307 88 42 chr21 13506444 13506636 -31400934 + L2 LINE L2 2827 3027 -245 383 273 145 15 chr21 13506902 13507081 -31400489 + MIR SINE MIR 34 236 -26 857 290 113 11 chr21 13507674 13508143 -31399427 + LTR33 LTR ERVL 1 517 -4 24 0 0 0 chr21 13508254 13508278 -31399292 + AT_rich Low_complexity Low_complexity 1 24 0 2212 70 31 0 chr21 13510463 13510474 -31397096 - AluY SINE Alu -15 296 287 477 0 0 0 chr21 13510474 13510527 -31397043 + (TTTAA)n Simple_repeat Simple_repeat 3 55 0 2212 70 31 0 chr21 13510527 13510802 -31396768 - AluY SINE Alu -24 287 1 808 197 88 27 chr21 13511271 13511601 -31395969 - MSTD LTR MaLR 0 396 1 1932 138 14 3 chr21 13512342 13512639 -31394931 + AluSx SINE Alu 2 301 -11 1815 170 3 20 chr21 13512801 13513107 -31394463 + AluJb SINE Alu 1 301 -11 391 315 17 51 chr21 13513901 13514079 -31393491 + MIR3 SINE MIR 32 203 -5 383 277 62 34 chr21 13514351 13514755 -31392815 + L1MC4 LINE L1 7507 8036 -6 403 288 135 27 chr21 13515058 13515280 -31392290 + MIR SINE MIR 17 262 0 38 51 0 0 chr21 13516662 13516721 -31390849 + AT_rich Low_complexity Low_complexity 1 59 0 291 195 34 153 chr21 13517500 13517618 -31389952 - MIR3 SINE MIR -8 200 97 229 347 91 50 chr21 13517843 13517964 -31389606 - L2 LINE L2 -28 3244 3119 285 171 61 0 chr21 13518802 13518884 -31388686 + (TA)n Simple_repeat Simple_repeat 2 88 0 299 285 29 15 chr21 13518963 13519100 -31388470 + L1ME4a LINE L1 5688 5826 -295 357 185 49 25 chr21 13519115 13519196 -31388374 + MIR SINE MIR 180 262 0 367 246 109 22 chr21 13519202 13519340 -31388230 + L1ME4a LINE L1 5832 5981 -140 1771 160 12 91 chr21 13519342 13519761 -31387809 - MLT1B LTR MaLR -2 388 3 2538 44 0 3 chr21 13519884 13520180 -31387390 + AluY SINE Alu 2 296 -15 282 267 30 104 chr21 13521887 13522022 -31385548 - MIR3 SINE MIR -81 127 3 1784 227 6 6 chr21 13523317 13523670 -31383900 + MLT1A1 LTR MaLR 1 353 -12 1575 207 92 45 chr21 13524631 13525075 -31382495 + MLT1C LTR MaLR 3 467 0 717 291 17 34 chr21 13525440 13525674 -31381896 - MIR SINE MIR -8 254 25 322 345 72 29 chr21 13526773 13526912 -31380658 + L2 LINE L2 3127 3271 -1 25 75 0 0 chr21 13529899 13529952 -31377618 + AT_rich Low_complexity Low_complexity 1 53 0 234 314 0 0 chr21 13530703 13530773 -31376797 + T-rich Low_complexity Low_complexity 1 70 0 180 244 111 0 chr21 13530774 13530819 -31376751 - L2 LINE L2 -16 3297 3248 1945 101 0 22 chr21 13530941 13531217 -31376353 + AluSq SINE Alu 43 312 -1 362 311 84 49 chr21 13531253 13531584 -31375986 - L2 LINE L2 -219 3053 2685 248 305 53 42 chr21 13531675 13531770 -31375800 - L2 LINE L2 0 3272 3177 739 250 19 0 chr21 13531811 13531971 -31375599 + MER58B DNA MER1_type 161 323 -18 977 51 0 0 chr21 13533380 13533498 -31374072 - L1PA5 LINE L1 0 6154 6037 723 43 21 0 chr21 13533498 13533591 -31373979 + L1PA5 LINE L1 5847 5941 -213 238 205 72 60 chr21 13533744 13533827 -31373743 + MIR SINE MIR 98 181 -81 426 213 112 69 chr21 13534645 13534799 -31372771 + L1MC5 LINE L1 7629 7775 -186 192 97 0 0 chr21 13534799 13534830 -31372740 + (CAAAA)n Simple_repeat Simple_repeat 2 32 0 426 213 112 69 chr21 13534830 13534854 -31372716 + L1MC5 LINE L1 7775 7797 -164 1420 215 0 17 chr21 13534854 13535147 -31372423 - AluJb SINE Alu -23 289 2 426 213 112 69 chr21 13535147 13535244 -31372326 + L1MC5 LINE L1 7797 7917 -44 4544 126 15 126 chr21 13535320 13536877 -31370693 - pTR5 LTR ERV1 0 2606 1524 2486 73 3 10 chr21 13537152 13537466 -31370104 + AluSx SINE Alu 1 312 0 318 87 0 0 chr21 13538453 13538499 -31369071 + (TG)n Simple_repeat Simple_repeat 1 46 0 180 0 0 0 chr21 13538498 13538518 -31369052 + (GA)n Simple_repeat Simple_repeat 1 20 0 * 237 221 73 0 chr21 13540604 13540672 -31366898 + MIR SINE MIR 84 156 -106 255 342 66 37 chr21 13541311 13541691 -31365879 + L2 LINE L2 2140 2530 -784 1946 170 38 39 chr21 13542251 13542797 -31364773 - MLT2A2 LTR ERVL 0 554 6 2289 108 0 10 chr21 13543330 13543636 -31363934 - AluSq SINE Alu -10 303 1 21 36 0 0 chr21 13543637 13543665 -31363905 + AT_rich Low_complexity Low_complexity 1 28 0 353 141 31 16 chr21 13544455 13544519 -31363051 + MER5A DNA MER1_type 125 189 0 239 312 46 0 chr21 13544530 13544634 -31362936 - MLT1I LTR MaLR -14 436 277 356 278 45 15 chr21 13544685 13544818 -31362752 - L1ME4a LINE L1 -9 6112 5976 434 237 59 8 chr21 13544871 13544989 -31362581 - MLT1J1 LTR MaLR -257 189 66 1848 132 22 39 chr21 13545104 13545415 -31362155 - AluSq SINE Alu -7 306 1 463 286 23 120 chr21 13545771 13546030 -31361540 - MER102b DNA MER1_type -2 339 106 387 0 0 0 chr21 13546143 13546186 -31361384 + (TG)n Simple_repeat Simple_repeat 2 44 0 1767 169 0 18 chr21 13546186 13546470 -31361100 - AluJo SINE Alu -28 284 6 2217 92 0 0 chr21 13546640 13546947 -31360623 - AluSg SINE Alu 0 307 1 22 0 0 0 chr21 13547150 13547172 -31360398 + AT_rich Low_complexity Low_complexity 1 22 0 2275 98 3 0 chr21 13547637 13547933 -31359637 - AluSq SINE Alu -16 297 1 203 96 58 19 chr21 13548027 13548079 -31359491 + T-rich Low_complexity Low_complexity 2 55 0 1837 166 3 10 chr21 13548201 13548514 -31359056 - AluJb SINE Alu 0 312 2 585 262 76 107 chr21 13548635 13549123 -31358447 - HAL1 LINE L1 -1218 1289 817 1433 112 79 9 chr21 13549271 13549486 -31358084 - MER30 DNA MER1_type 0 230 1 397 218 36 103 chr21 13549486 13549651 -31357919 + LTR8A LTR ERV1 574 727 0 527 301 35 22 chr21 13549654 13549880 -31357690 + LTR33A LTR ERVL 295 523 0 23 92 0 0 chr21 13550260 13550325 -31357245 + AT_rich Low_complexity Low_complexity 1 65 0 301 253 40 0 chr21 13551454 13551529 -31356041 + MLT1K LTR MaLR 511 588 0 2926 131 23 5 chr21 13551885 13552327 -31355243 + L1PA15 LINE L1 5709 6158 -7 237 322 82 29 chr21 13552569 13552740 -31354830 + MIR SINE MIR 19 198 -64 920 131 81 45 chr21 13552775 13552973 -31354597 + THE1C LTR MaLR 83 287 -88 186 323 150 47 chr21 13552994 13553018 -31354552 - L2 LINE L2 -201 3071 3051 240 59 0 0 chr21 13553018 13553052 -31354518 + (CAAA)n Simple_repeat Simple_repeat 2 35 0 186 323 150 47 chr21 13553052 13553154 -31354416 - L2 LINE L2 -221 3051 2932 927 238 44 67 chr21 13553371 13553392 -31354178 - MER39 LTR ERV1 -49 636 616 1616 117 101 79 chr21 13553392 13553759 -31353811 + THE1C LTR MaLR 1 375 0 927 238 44 67 chr21 13553759 13554122 -31353448 - MER39 LTR ERV1 -69 616 243 298 314 86 9 chr21 13554127 13554232 -31353338 - MER39 LTR ERV1 -574 133 21 831 50 0 0 chr21 13554326 13554426 -31353144 - L1PA5 LINE L1 -6 6148 6049 286 92 8 0 chr21 13554426 13554473 -31353097 + L1P1 LINE L1 5698 5735 -420 1241 153 5 0 chr21 13554957 13555153 -31352417 - AluSg/x SINE Alu -1 311 115 572 266 115 28 chr21 13555888 13556034 -31351536 - MIR SINE MIR 0 262 89 1752 112 0 0 chr21 13556034 13556275 -31351295 + AluSq SINE Alu 1 241 -72 572 266 115 28 chr21 13556275 13556346 -31351224 - MIR SINE MIR -173 89 26 2575 159 26 14 chr21 13556896 13557317 -31350253 + MSTB LTR MaLR 1 426 0 369 0 0 0 chr21 13557489 13557530 -31350040 + (TA)n Simple_repeat Simple_repeat 1 41 0 1114 164 94 101 chr21 13557530 13557816 -31349754 - AluJo SINE Alu -18 284 1 487 242 176 6 chr21 13560914 13561096 -31346474 - MIR SINE MIR -2 260 48 215 317 146 65 chr21 13561147 13561545 -31346025 - L2 LINE L2 -13 3259 2830 827 239 49 10 chr21 13562766 13562971 -31344599 + MIR SINE MIR 40 252 -10 195 100 0 0 chr21 13563146 13563176 -31344394 + (TC)n Simple_repeat Simple_repeat 1 30 0 198 301 72 12 chr21 13563354 13563437 -31344133 + MER5A DNA MER1_type 91 178 -11 878 237 127 27 chr21 13564372 13564803 -31342767 - MLT1D LTR MaLR 0 505 6 306 0 0 0 chr21 13565695 13565729 -31341841 + (TA)n Simple_repeat Simple_repeat 2 35 0 2237 99 0 7 chr21 13565729 13566032 -31341538 - AluY SINE Alu -10 301 1 1342 185 83 23 chr21 13566101 13566366 -31341204 - AluJo SINE Alu -31 281 1 24 0 0 0 chr21 13567039 13567063 -31340507 + AT_rich Low_complexity Low_complexity 1 24 0 221 207 158 24 chr21 13567947 13568029 -31339541 + L2 LINE L2 3209 3301 -12 426 279 113 25 chr21 13568758 13568962 -31338608 - MLT1K LTR MaLR -18 570 349 270 357 108 46 chr21 13569825 13570130 -31337440 - L2 LINE L2 -59 3213 2890 3344 108 20 0 chr21 13570738 13571182 -31336388 - MLT2A2 LTR ERVL 0 453 1 977 190 86 18 chr21 13571243 13571669 -31335901 + MLT1D LTR MaLR 22 492 -13 22 35 0 0 chr21 13572843 13572872 -31334698 + AT_rich Low_complexity Low_complexity 1 29 0 212 255 117 75 chr21 13572925 13573019 -31334551 - MIR SINE MIR -79 183 86 2259 106 0 3 chr21 13573271 13573572 -31333998 + AluSg SINE Alu 1 300 -10 206 64 0 85 chr21 13574712 13574759 -31332811 + (TTATA)n Simple_repeat Simple_repeat 3 45 0 22 0 0 0 chr21 13575366 13575388 -31332182 + AT_rich Low_complexity Low_complexity 1 22 0 221 333 10 10 chr21 13575658 13575757 -31331813 - MIR SINE MIR -151 111 13 654 327 15 21 chr21 13575771 13576016 -31331554 + MIR SINE MIR 15 262 0 270 160 0 0 chr21 13576041 13576091 -31331479 + (TATATG)n Simple_repeat Simple_repeat 2 51 0 471 317 25 25 chr21 13577412 13577611 -31329959 - MIR SINE MIR -62 200 2 1016 220 9 22 chr21 13578372 13578599 -31328971 - MER58A DNA MER1_type 0 224 1 10544 31 0 0 chr21 13579160 13581184 -31326386 - L1PA3 LINE L1 -3 6152 4129 1082 258 143 7 chr21 13582430 13582876 -31324694 - Charlie4a DNA MER1_type -1 507 1 1158 170 0 28 chr21 13583378 13583590 -31323980 + MER3 DNA MER1_type 4 209 0 281 355 42 10 chr21 13584186 13584325 -31323245 - MIR SINE MIR -63 145 7 2593 47 0 0 chr21 13584826 13585127 -31322443 + AluY SINE Alu 1 301 -10 696 262 52 22 chr21 13586053 13586282 -31321288 - MIR SINE MIR -22 240 5 1251 190 28 118 chr21 13586419 13586586 -31320984 + MLT1A2 LTR MaLR 11 191 -183 2184 128 0 0 chr21 13586586 13586891 -31320679 + AluSx SINE Alu 1 305 -7 1251 190 28 118 chr21 13586891 13587123 -31320447 + MLT1A2 LTR MaLR 191 374 0 261 139 0 0 chr21 13587659 13587702 -31319868 + (TTCTCC)n Simple_repeat Simple_repeat 6 48 0 1214 189 0 5 chr21 13587704 13587921 -31319649 - AluJo SINE Alu -4 308 93 1856 148 3 26 chr21 13588319 13588630 -31318940 + AluSx SINE Alu 1 304 -8 2496 112 0 6 chr21 13588863 13589220 -31318350 + THE1A LTR MaLR 1 355 0 2065 127 0 0 chr21 13589752 13590082 -31317488 - AluSx SINE Alu 0 330 1 288 301 83 58 chr21 13591289 13591445 -31316125 + MER5A DNA MER1_type 3 162 -27 248 340 68 65 chr21 13593610 13593931 -31313639 - LTR16C LTR ERVL -31 460 139 24 0 0 0 chr21 13594810 13594834 -31312736 + AT_rich Low_complexity Low_complexity 1 24 0 21 0 0 0 chr21 13596681 13596702 -31310868 + AT_rich Low_complexity Low_complexity 1 21 0 759 161 0 8 chr21 13596702 13596820 -31310750 - AluJo SINE Alu -184 118 2 21 0 0 0 chr21 13597061 13597082 -31310488 + AT_rich Low_complexity Low_complexity 1 21 0 211 372 0 0 chr21 13597498 13597576 -31309994 + L2 LINE L2 3196 3273 -40 250 240 73 132 chr21 13597764 13597968 -31309602 - HAL1 LINE L1 -34 2473 2282 1067 279 129 59 chr21 13597991 13598631 -31308939 - HAL1 LINE L1 -343 2164 1434 1547 199 42 9 chr21 13598631 13598963 -31308607 - MER61A LTR ERV1 0 343 1 1067 279 129 59 chr21 13598963 13599273 -31308297 - HAL1 LINE L1 -1073 1434 1147 332 314 139 35 chr21 13599278 13599826 -31307744 - HAL1 LINE L1 -1416 1091 487 22 80 0 0 chr21 13600166 13600216 -31307354 + AT_rich Low_complexity Low_complexity 1 50 0 204 245 0 0 chr21 13601200 13601249 -31306321 + A-rich Low_complexity Low_complexity 1 49 0 2302 132 25 6 chr21 13602098 13602455 -31305115 - THE1B LTR MaLR 0 364 1 1832 134 3 34 chr21 13602517 13602852 -31304718 - AluSx SINE Alu 0 326 1 25 75 0 0 chr21 13603754 13603807 -31303763 + AT_rich Low_complexity Low_complexity 1 53 0 1401 210 45 18 chr21 13604498 13604784 -31302786 - AluJo SINE Alu -18 294 1 191 343 58 44 chr21 13604977 13605251 -31302319 + L2 LINE L2 2281 2558 -756 2105 174 142 9 chr21 13606020 13606479 -31301091 + MLT2B1 LTR ERVL 1 520 0 7422 162 52 48 chr21 13606915 13608552 -31299018 - MER52A LTR ERV1 0 1755 1 511 306 70 30 chr21 13609318 13609589 -31297981 - LTR16A1 LTR ERVL -5 452 171 336 159 0 0 chr21 13613081 13613150 -31294420 - L1MA10 LINE L1 -2 6332 6264 1000 230 38 83 chr21 13613153 13613385 -31294185 - L1MEc LINE L1 -5173 1223 1021 3321 142 9 15 chr21 13613385 13613915 -31293655 - MER1A DNA MER1_type 0 527 1 1000 230 38 83 chr21 13613915 13614151 -31293419 - L1MEc LINE L1 -5375 1021 776 257 143 18 0 chr21 13614151 13614207 -31293363 + LTR66 LTR ERVL 383 439 -171 217 200 40 0 chr21 13614207 13614257 -31293313 + (CATATA)n Simple_repeat Simple_repeat 2 53 0 770 233 88 16 chr21 13614286 13614479 -31293091 - MIR SINE MIR -9 253 47 1579 269 59 22 chr21 13614482 13614991 -31292579 - L1MEc LINE L1 -5636 760 233 572 213 63 0 chr21 13615006 13615133 -31292437 - L1MEc LINE L1 -6227 169 35 524 114 0 48 chr21 13615153 13615258 -31292312 + (TG)n Simple_repeat Simple_repeat 1 100 0 2161 102 0 3 chr21 13616361 13616714 -31290856 + AluSp SINE Alu 1 352 0 216 300 17 0 chr21 13617069 13617129 -31290441 + L2 LINE L2 3205 3265 -7 22 94 0 0 chr21 13617295 13617359 -31290211 + AT_rich Low_complexity Low_complexity 1 64 0 357 24 0 0 chr21 13617593 13617635 -31289935 + (CA)n Simple_repeat Simple_repeat 1 42 0 2099 131 35 71 chr21 13618692 13619058 -31288512 - LTR18A LTR ERVL -1 356 4 782 207 57 10 chr21 13619276 13619469 -31288101 - MIR SINE MIR -54 208 7 271 0 0 49 chr21 13620365 13620406 -31287164 + (CAAAA)n Simple_repeat Simple_repeat 2 40 0 2479 179 26 13 chr21 13622583 13623119 -31284451 - L1MC2 LINE L1 -1 6343 5801 939 193 6 0 chr21 13623195 13623371 -31284199 + L1PB4 LINE L1 5967 6143 -13 2070 141 0 6 chr21 13625386 13625872 -31281698 + AluSx SINE Alu 3 312 0 1214 69 23 0 chr21 13625671 13625895 -31281675 + (GAAA)n Simple_repeat Simple_repeat 2 229 0 204 284 102 0 chr21 13626691 13626779 -31280791 - L2 LINE L2 -1216 2098 2002 265 272 70 35 chr21 13627651 13627765 -31279805 + MIR SINE MIR 33 150 -58 1557 207 42 6 chr21 13628771 13629124 -31278446 + MER47A DNA MER2_type 1 366 0 24 32 0 0 chr21 13629733 13629764 -31277806 + AT_rich Low_complexity Low_complexity 1 31 0 1749 162 60 30 chr21 13629809 13630173 -31277397 + THE1C LTR MaLR 1 375 0 1143 254 53 33 chr21 13631265 13631663 -31275907 - MLT1I LTR MaLR -1 408 3 1506 210 31 12 chr21 13631880 13632101 -31275469 - MER58B DNA MER1_type -2079 341 126 2359 96 0 3 chr21 13632101 13632413 -31275157 - AluY SINE Alu 0 311 1 1506 210 31 12 chr21 13632413 13632445 -31275125 - MER58B DNA MER1_type -2294 126 96 2307 108 0 0 chr21 13632445 13632740 -31274830 + AluSg SINE Alu 1 295 -15 1506 210 31 12 chr21 13632740 13632809 -31274761 - MER58B DNA MER1_type -2324 96 12 2168 92 0 10 chr21 13633766 13634060 -31273510 + AluSc SINE Alu 1 291 -18 2523 65 0 0 chr21 13634445 13634769 -31272801 - L1PA6 LINE L1 0 6154 5831 2310 106 39 25 chr21 13634788 13635147 -31272423 + THE1B LTR MaLR 1 364 0 4058 198 68 118 chr21 13635806 13635870 -31271700 - Charlie1a DNA MER1_type -1310 1451 1385 611 212 50 11 chr21 13635870 13636049 -31271521 - MER53 DNA DNA 0 189 4 4058 198 68 118 chr21 13636049 13636467 -31271103 - Charlie1a DNA MER1_type -1376 1385 947 2038 130 9 22 chr21 13636467 13636783 -31270787 - AluSx SINE Alu 0 312 1 4058 198 68 118 chr21 13636783 13637826 -31269744 - Charlie1a DNA MER1_type -1814 947 2 253 351 55 30 chr21 13638458 13638623 -31268947 + L2 LINE L2 2952 3120 -193 5464 174 28 14 chr21 13638628 13639914 -31267656 - L1MA5 LINE L1 0 6300 4992 322 296 74 42 chr21 13639927 13640116 -31267454 + L2 LINE L2 3112 3306 -7 1523 196 11 21 chr21 13640116 13640401 -31267169 + AluJo SINE Alu 1 282 -30 189 289 96 36 chr21 13640610 13640693 -31266877 + L2 LINE L2 3225 3312 -1 210 37 0 0 chr21 13643502 13643529 -31264041 + (TAAAAA)n Simple_repeat Simple_repeat 2 28 0 316 219 16 0 chr21 13643789 13643853 -31263717 + MER52A LTR ERV1 1 65 -1690 6127 193 19 88 chr21 13644446 13645984 -31261586 + MER52A LTR ERV1 342 1755 0 23 0 0 0 chr21 13646137 13646160 -31261410 + AT_rich Low_complexity Low_complexity 1 23 0 22 35 0 0 chr21 13647427 13647456 -31260114 + AT_rich Low_complexity Low_complexity 1 29 0 345 295 97 38 chr21 13648465 13648702 -31258868 - L1M4 LINE L1 -784 5362 5112 341 286 22 11 chr21 13648982 13649073 -31258497 + MER5A DNA MER1_type 11 102 -87 205 267 0 0 chr21 13649527 13649572 -31257998 + (TG)n Simple_repeat Simple_repeat 2 46 0 299 245 30 17 chr21 13649658 13649796 -31257774 - L1MC5 LINE L1 -1 8041 7829 332 252 2 0 chr21 13649912 13650005 -31257565 - L1ME2 LINE L1 -1 6165 6069 1382 225 107 34 chr21 13650026 13650492 -31257078 + L1ME2 LINE L1 5523 6022 -142 14391 156 122 4 chr21 13650493 13653316 -31254254 - L1PA12 LINE L1 -4004 3580 425 1211 263 13 19 chr21 13653580 13653956 -31253614 + L1M4 LINE L1 4048 4421 -1725 1695 213 58 3 chr21 13653980 13654342 -31253228 - L1PB4 LINE L1 -11 6145 5764 3364 220 44 20 chr21 13654345 13655573 -31251997 + L1M4 LINE L1 4415 5668 -516 2603 61 0 0 chr21 13655578 13655889 -31251681 + AluY SINE Alu 1 311 0 4428 142 29 0 chr21 13655894 13656657 -31250913 + L1MA8 LINE L1 5500 6284 -7 21 57 0 0 chr21 13657131 13657166 -31250404 + AT_rich Low_complexity Low_complexity 1 35 0 189 0 0 0 chr21 13657363 13657384 -31250186 + (A)n Simple_repeat Simple_repeat 1 21 0 288 229 121 12 chr21 13657944 13658027 -31249543 + LTR67 LTR ERVL 458 549 -8 282 345 108 44 chr21 13658089 13658288 -31249282 + L2 LINE L2 2555 2783 -531 1837 127 61 71 chr21 13658288 13658667 -31248903 + THE1C LTR MaLR 1 375 0 282 345 108 44 chr21 13658667 13658783 -31248787 + L2 LINE L2 2783 2890 -424 213 344 10 31 chr21 13659051 13659147 -31248423 + L2 LINE L2 3137 3230 -42 215 296 204 0 chr21 13661450 13661538 -31246032 - L2 LINE L2 0 3313 3208 244 242 81 0 chr21 13662329 13662391 -31245179 - MER91C DNA MER1_type -52 88 22 288 375 53 14 chr21 13662554 13662762 -31244808 + L2 LINE L2 2344 2559 -755 2183 114 0 3 chr21 13663487 13663785 -31243785 - AluSq SINE Alu -16 297 1 706 311 60 38 chr21 13664446 13664813 -31242757 - L2 LINE L2 -2 3311 2937 9688 182 25 68 chr21 13664813 13667694 -31239876 + L1PA16 LINE L1 2700 5702 -464 2309 104 0 3 chr21 13667694 13668001 -31239569 + AluSg SINE Alu 1 306 -4 9688 182 25 68 chr21 13668001 13668139 -31239431 + L1PA16 LINE L1 5702 5844 -322 2025 135 10 3 chr21 13668139 13668436 -31239134 + AluSx SINE Alu 1 299 -13 9688 182 25 68 chr21 13668436 13668836 -31238734 + L1PA16 LINE L1 5844 5951 -215 2211 130 0 0 chr21 13668836 13669144 -31238426 + AluSx SINE Alu 1 308 -4 9688 182 25 68 chr21 13669144 13669343 -31238227 + L1PA16 LINE L1 5951 6157 -9 185 279 0 23 chr21 13669366 13669409 -31238161 - L2 LINE L2 -364 2949 2908 710 317 99 25 chr21 13669513 13669876 -31237694 - LTR33 LTR ERVL -131 390 1 1214 305 221 24 chr21 13669876 13670600 -31236970 - L2 LINE L2 -402 2912 2046 1741 219 95 7 chr21 13671123 13671584 -31235986 + MLT1D LTR MaLR 4 505 0 1112 173 64 54 chr21 13674508 13674803 -31232767 + MER33 DNA MER1_type 13 310 -14 180 0 0 0 chr21 13675066 13675086 -31232484 + (CA)n Simple_repeat Simple_repeat 2 21 0 232 333 64 13 chr21 13676303 13676381 -31231189 + MER5A DNA MER1_type 92 173 -16 * 373 256 23 0 chr21 13676314 13676400 -31231170 - MER5A DNA MER1_type -93 96 9 448 16 0 0 chr21 13678237 13678298 -31229272 - AluY SINE Alu -2 309 249 189 296 136 11 chr21 13679393 13679481 -31228089 - MIR SINE MIR -90 118 20 2478 226 108 26 chr21 13680880 13681057 -31226513 - L1ME1 LINE L1 -8 6158 5997 1960 164 0 0 chr21 13681057 13681368 -31226202 - AluSx SINE Alu -1 311 1 2478 226 108 26 chr21 13681368 13682234 -31225336 - L1ME1 LINE L1 -169 5997 5030 751 278 39 7 chr21 13682241 13682525 -31225045 - L1ME1 LINE L1 -3148 2998 2706 1085 158 0 0 chr21 13682620 13682791 -31224779 - Tigger4(Zombi) DNA MER2_type -1 2730 2560 3087 146 25 31 chr21 13683624 13684174 -31223396 - LTR10A LTR ERV1 -62 547 1 549 111 89 0 chr21 13684799 13684889 -31222681 + MER4A LTR ERV1 1 98 -566 1735 134 0 90 chr21 13684942 13685263 -31222307 + MER4A LTR ERV1 373 664 0 204 125 0 0 chr21 13685435 13685467 -31222103 + (TTCA)n Simple_repeat Simple_repeat 1 32 0 21 36 0 0 chr21 13685790 13685818 -31221752 + AT_rich Low_complexity Low_complexity 1 28 0 1476 202 6 22 chr21 13685942 13686259 -31221311 - AluJo SINE Alu 0 312 1 2632 188 7 71 chr21 13686698 13687047 -31220523 - L1MB8 LINE L1 0 6178 5891 216 0 0 0 chr21 13687047 13687071 -31220499 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 2632 188 7 71 chr21 13687071 13687397 -31220173 - L1MB8 LINE L1 -287 5891 5546 284 319 74 37 chr21 13687550 13687713 -31219857 + MIR SINE MIR 20 188 -74 21 57 0 0 chr21 13687760 13687795 -31219775 + AT_rich Low_complexity Low_complexity 1 35 0 22 0 0 0 chr21 13688953 13688975 -31218595 + AT_rich Low_complexity Low_complexity 1 22 0 716 261 6 6 chr21 13689294 13689459 -31218111 + MER5A DNA MER1_type 1 165 -24 616 248 31 12 chr21 13689480 13689641 -31217929 + MER5B DNA MER1_type 1 164 -14 484 267 81 37 chr21 13689661 13689822 -31217748 + MER5B DNA MER1_type 8 175 -3 211 336 100 36 chr21 13690581 13690801 -31216769 + L2 LINE L2 2549 2782 -532 483 283 41 70 chr21 13691278 13691522 -31216048 - MIR SINE MIR -6 256 20 306 340 23 2 chr21 13692373 13692483 -31215087 - MIR SINE MIR -65 143 25 2537 62 0 3 chr21 13692483 13692791 -31214779 - AluY SINE Alu -4 307 1 306 340 23 2 chr21 13692791 13692803 -31214767 - MIR SINE MIR -183 25 15 442 279 66 11 chr21 13692999 13693182 -31214388 - MLT1I LTR MaLR -137 272 80 370 136 0 0 chr21 13693192 13693251 -31214319 + LTR1B LTR ERV1 1 59 -767 3638 156 102 18 chr21 13693341 13694048 -31213522 + LTR1B LTR ERV1 61 826 0 2278 288 85 19 chr21 13695331 13696371 -31211199 - L2 LINE L2 -102 3211 2107 1211 318 74 18 chr21 13696788 13697358 -31210212 + L2 LINE L2 1937 2538 -776 416 318 71 12 chr21 13697527 13697697 -31209873 - MIR3 SINE MIR -9 199 20 4246 163 81 4 chr21 13698436 13699201 -31208369 + LTR1B LTR ERV1 3 826 0 514 329 52 26 chr21 13699496 13699727 -31207843 + MIR SINE MIR 16 252 -10 1412 234 119 30 chr21 13699889 13700351 -31207219 - MLT1D LTR MaLR -2 503 1 208 338 123 36 chr21 13700500 13700719 -31206851 - L2 LINE L2 -201 3071 2834 191 333 128 8 chr21 13701329 13701446 -31206124 + L2 LINE L2 3175 3305 -8 2372 100 6 0 chr21 13702571 13702882 -31204688 + AluSq SINE Alu 1 313 0 662 316 86 12 chr21 13703379 13703715 -31203855 + L3 LINE CR1 1178 1538 -39 644 344 21 12 chr21 13703789 13704123 -31203447 + L1ME LINE L1 357 693 -6028 1722 193 86 82 chr21 13704416 13704976 -31202594 + LTR1B LTR ERV1 265 826 0 2083 151 10 62 chr21 13704977 13705393 -31202177 + L1MA7 LINE L1 5617 6010 -281 777 196 0 21 chr21 13705567 13705710 -31201860 + FRAM SINE Alu 19 158 -18 307 243 0 87 chr21 13705840 13706025 -31201545 + (ATATG)n Simple_repeat Simple_repeat 5 173 0 222 272 0 84 chr21 13706183 13706374 -31201196 + (ATATG)n Simple_repeat Simple_repeat 5 179 0 655 280 82 14 chr21 13706374 13706803 -31200767 + L1ME LINE L1 1506 1963 -4577 * 1113 234 46 54 chr21 13706801 13707305 -31200265 + L1MEc LINE L1 3270 3769 -2771 669 273 33 0 chr21 13707290 13707473 -31200097 + L1ME LINE L1 2003 2191 -4530 * 436 279 122 40 chr21 13707519 13707634 -31199936 + L1ME LINE L1 4870 4974 -1566 1862 144 17 45 chr21 13707634 13707988 -31199582 - MER2 DNA MER2_type 0 344 1 436 279 122 40 chr21 13707988 13708403 -31199167 + L1ME LINE L1 4974 5444 -1096 5241 131 25 25 chr21 13708534 13708915 -31198655 - L1PA16 LINE L1 -21 6145 5766 2351 143 23 10 chr21 13708915 13709313 -31198257 + MER57A LTR ERV1 1 403 0 5241 131 25 25 chr21 13709313 13709741 -31197829 - L1PA16 LINE L1 -400 5766 5329 2331 107 0 0 chr21 13709741 13710039 -31197531 - AluSx SINE Alu -14 298 1 5241 131 25 25 chr21 13710039 13710240 -31197330 - L1PA16 LINE L1 -837 5329 5130 1217 174 0 5 chr21 13710242 13710437 -31197133 - AluJb SINE Alu -17 295 102 3432 222 92 5 chr21 13710440 13711362 -31196208 - L1ME LINE L1 -1034 5506 4505 405 223 52 133 chr21 13711362 13711595 -31195975 + L1ME LINE L1 5490 5703 -837 629 227 97 28 chr21 13711605 13711821 -31195749 + L1PA16 LINE L1 5936 6166 0 242 226 146 49 chr21 13711831 13711995 -31195575 + L1ME LINE L1 5822 6001 -555 26 30 0 0 chr21 13712445 13712478 -31195092 + AT_rich Low_complexity Low_complexity 1 33 0 520 329 52 29 chr21 13712661 13713257 -31194313 + L1MC4a LINE L1 4409 5018 -1128 1543 259 83 28 chr21 13713551 13714200 -31193370 + L1MC4a LINE L1 5363 6047 -1761 2311 145 40 42 chr21 13715048 13715475 -31192095 + MSTB LTR MaLR 1 426 0 482 274 134 103 chr21 13715499 13715608 -31191962 + L2 LINE L2 2804 2908 -405 1884 163 0 0 chr21 13715608 13715920 -31191650 + AluSx SINE Alu 1 312 0 482 274 134 103 chr21 13715920 13716141 -31191429 + L2 LINE L2 2908 3158 -155 1408 213 66 20 chr21 13716141 13716488 -31191082 - MLT1A1 LTR MaLR 0 365 3 482 274 134 103 chr21 13716488 13716647 -31190923 + L2 LINE L2 3158 3311 -2 1839 213 102 28 chr21 13716684 13717154 -31190416 + MLT1D LTR MaLR 1 505 0 297 0 0 0 chr21 13717245 13717278 -31190292 + (TC)n Simple_repeat Simple_repeat 2 34 0 186 43 0 0 chr21 13717277 13717300 -31190270 + (TG)n Simple_repeat Simple_repeat 2 24 0 * 543 167 0 0 chr21 13717317 13717431 -31190139 + GA-rich Low_complexity Low_complexity 2 115 0 1970 183 2 37 chr21 13717431 13717836 -31189734 - MLT2D LTR ERVL -20 534 3 506 203 8 45 chr21 13718337 13718470 -31189100 + MLT1K LTR MaLR 447 574 -14 354 313 40 67 chr21 13719207 13719431 -31188139 + MLT1K LTR MaLR 88 305 -283 326 325 121 29 chr21 13720299 13720539 -31187031 + MLT1J1 LTR MaLR 58 319 -127 790 271 76 46 chr21 13720694 13720996 -31186574 - MLT1J LTR MaLR -159 352 42 2746 13 0 0 chr21 13721628 13721931 -31185639 - AluY SINE Alu -8 303 1 24 67 0 0 chr21 13722076 13722121 -31185449 + AT_rich Low_complexity Low_complexity 1 45 0 2258 98 0 9 chr21 13722231 13722547 -31185023 - AluSq SINE Alu 0 313 1 374 295 36 0 chr21 13722574 13722686 -31184884 - MIR SINE MIR -37 225 110 23 33 0 0 chr21 13723767 13723797 -31183773 + AT_rich Low_complexity Low_complexity 1 30 0 664 347 108 27 chr21 13723895 13724414 -31183156 + L2 LINE L2 2297 2857 -457 1754 174 110 62 chr21 13725743 13726181 -31181389 + MLT1C LTR MaLR 1 459 -8 304 243 169 7 chr21 13727489 13727625 -31179945 - L1ME4a LINE L1 -4 6117 5960 29 18 0 55 chr21 13728238 13728293 -31179277 + AT_rich Low_complexity Low_complexity 1 52 0 252 279 132 0 chr21 13728489 13728618 -31178952 - L1ME4a LINE L1 -179 5942 5797 668 274 67 18 chr21 13728657 13728880 -31178690 + MIR SINE MIR 1 234 -28 569 282 102 9 chr21 13728922 13729138 -31178432 + MIR SINE MIR 14 249 -13 191 182 0 91 chr21 13729164 13729208 -31178362 + MIR SINE MIR 219 258 -4 2489 117 11 16 chr21 13729573 13729950 -31177620 + THE1C LTR MaLR 1 375 0 243 0 0 0 chr21 13729996 13730023 -31177547 + (TG)n Simple_repeat Simple_repeat 2 28 0 467 276 76 0 chr21 13730710 13730855 -31176715 + MIR SINE MIR 14 169 -93 2062 136 0 3 chr21 13731073 13731375 -31176195 - AluJb SINE Alu -1 311 11 3870 185 14 1 chr21 13731450 13732190 -31175380 + L1MB4 LINE L1 5430 6178 -2 1108 284 148 17 chr21 13732235 13732944 -31174626 - L1MC4a LINE L1 -1644 6164 5363 298 365 119 24 chr21 13736308 13736560 -31171010 - L3 LINE CR1 -7 1570 1295 435 292 82 10 chr21 13739887 13740082 -31167488 - MIR SINE MIR -14 248 40 350 354 34 6 chr21 13740682 13740860 -31166710 + HAL1 LINE L1 257 439 -2068 1987 268 86 55 chr21 13741309 13742521 -31165049 + HAL1 LINE L1 1115 2364 -143 308 305 0 19 chr21 13742650 13742755 -31164815 + GA-rich Low_complexity Low_complexity 1 103 0 3040 180 92 44 chr21 13743020 13743771 -31163799 + LTR48 LTR ERV1 1 787 0 349 374 17 17 chr21 13743960 13744075 -31163495 - MER91A DNA MER1_type -30 166 52 3526 184 36 55 chr21 13744940 13745710 -31161860 - L1MB8 LINE L1 0 6178 5431 2173 114 0 17 chr21 13745710 13746007 -31161563 - AluSx SINE Alu -20 292 1 3526 184 36 55 chr21 13746007 13746322 -31161248 - L1MB8 LINE L1 -747 5431 5112 378 358 40 10 chr21 13746526 13746727 -31160843 - MIR SINE MIR -31 231 25 336 296 44 15 chr21 13747559 13747694 -31159876 - MIR SINE MIR -70 192 54 471 271 74 52 chr21 13748788 13749113 -31158457 - LTR16A LTR ERVL -118 332 1 2521 169 15 0 chr21 13749411 13749818 -31157752 - MSTB LTR MaLR -13 413 1 251 356 11 0 chr21 13749819 13749906 -31157664 - MIR SINE MIR -56 152 65 293 140 18 0 chr21 13750758 13750815 -31156755 + (CAA)n Simple_repeat Simple_repeat 3 60 0 2586 193 130 8 chr21 13751799 13752451 -31155119 - LTR48 LTR ERV1 -45 742 11 218 191 0 24 chr21 13752561 13752603 -31154967 + L3 LINE CR1 1535 1575 -2 184 333 0 0 chr21 13752754 13752799 -31154771 - L2 LINE L2 -78 3194 3150 222 37 0 0 chr21 13753232 13753259 -31154311 + (T)n Simple_repeat Simple_repeat 1 27 0 23 0 0 0 chr21 13754503 13754526 -31153044 + AT_rich Low_complexity Low_complexity 1 23 0 21 0 0 0 chr21 13755395 13755416 -31152154 + AT_rich Low_complexity Low_complexity 1 21 0 24 0 0 0 chr21 13756350 13756374 -31151196 + AT_rich Low_complexity Low_complexity 1 24 0 236 62 0 62 chr21 13756961 13757009 -31150561 + (CAAAAA)n Simple_repeat Simple_repeat 2 46 0 213 311 92 8 chr21 13757369 13757488 -31150082 + L2 LINE L2 3178 3306 -7 2276 98 0 3 chr21 13760180 13760475 -31147095 + AluSq SINE Alu 1 294 -19 650 285 104 31 chr21 13763878 13764232 -31143338 - LTR33 LTR ERVL -11 510 131 356 186 0 0 chr21 13764439 13764498 -31143072 + MLT1B LTR MaLR 1 59 -408 888 211 0 6 chr21 13764499 13764679 -31142891 + MLT1B LTR MaLR 212 390 0 2223 109 7 0 chr21 13764845 13765148 -31142422 - AluSp SINE Alu -7 306 2 264 231 55 11 chr21 13765293 13765384 -31142186 - HAL1 LINE L1 -901 1606 1512 531 271 99 28 chr21 13765523 13765807 -31141763 - L1MEd LINE L1 -4912 1207 904 34 102 0 0 chr21 13765880 13765998 -31141572 + AT_rich Low_complexity Low_complexity 1 118 0 347 323 15 57 chr21 13766018 13766281 -31141289 - L1MEd LINE L1 -5298 821 570 4324 181 19 18 chr21 13766358 13766512 -31141058 - L1MB5 LINE L1 0 6174 6022 2571 118 5 3 chr21 13766512 13766886 -31140684 + THE1C LTR MaLR 1 375 0 4324 181 19 18 chr21 13766886 13767586 -31139984 - L1MB5 LINE L1 -152 6022 5319 * 22865 145 10 11 chr21 13767582 13772480 -31135090 - L1PA10 LINE L1 -1 6482 1590 2870 82 30 8 chr21 13772480 13772883 -31134687 + MLT2A1 LTR ERVL 3 480 -35 200 216 0 0 chr21 13772901 13772938 -31134632 + (TATATG)n Simple_repeat Simple_repeat 5 41 0 345 59 78 0 chr21 13772938 13772989 -31134581 + MLT2A2 LTR ERVL 399 453 0 4450 232 44 36 chr21 13772990 13774561 -31133009 - L1PA10 LINE L1 -4736 1139 3 3477 241 36 8 chr21 13774558 13775580 -31131990 - L1MB5 LINE L1 -820 5326 4276 * 189 0 0 0 chr21 13777049 13777070 -31130500 + (T)n Simple_repeat Simple_repeat 1 21 0 270 278 10 21 chr21 13778635 13778732 -31128838 + 7SK RNA RNA 1 96 -97 446 254 8 62 chr21 13779013 13779143 -31128427 + L2 LINE L2 3150 3272 0 10572 119 29 3 chr21 13780298 13782708 -31124862 + L1PA8 LINE L1 3721 6169 -3 990 190 60 154 chr21 13782721 13782820 -31124750 + MLT1A1 LTR MaLR 1 108 -257 2051 138 36 36 chr21 13782820 13783182 -31124388 + THE1B LTR MaLR 3 364 0 990 190 60 154 chr21 13783182 13783518 -31124052 + MLT1A1 LTR MaLR 108 364 -1 2658 161 16 2 chr21 13783737 13784166 -31123404 - MSTB2 LTR MaLR 0 457 23 80 11 0 0 chr21 13784234 13784321 -31123249 + AT_rich Low_complexity Low_complexity 1 87 0 371 308 126 0 chr21 13784978 13785160 -31122410 - MIR SINE MIR -11 251 47 845 199 11 6 chr21 13785849 13786030 -31121540 + MER53 DNA DNA 8 189 0 201 175 0 0 chr21 13786559 13786599 -31120971 + (CA)n Simple_repeat Simple_repeat 2 41 0 254 286 105 0 chr21 13786623 13786756 -31120814 + L1ME4a LINE L1 5969 6115 -6 359 336 61 23 chr21 13786883 13787014 -31120556 + L2 LINE L2 3136 3271 -1 2243 121 10 0 chr21 13787729 13788035 -31119535 + AluSg SINE Alu 1 309 -1 351 0 0 0 chr21 13788520 13788559 -31119011 + (CA)n Simple_repeat Simple_repeat 2 40 0 189 0 0 0 chr21 13788558 13788579 -31118991 + (GA)n Simple_repeat Simple_repeat 2 22 0 * 351 0 0 0 chr21 13789387 13789426 -31118144 + (CA)n Simple_repeat Simple_repeat 2 40 0 188 204 82 20 chr21 13789677 13789726 -31117844 + L2 LINE L2 3220 3271 -1 893 254 225 19 chr21 13790218 13790636 -31116934 - MLT1D LTR MaLR -1 504 1 887 225 38 9 chr21 13790802 13791015 -31116555 - MER20 DNA MER1_type 0 219 1 24 32 0 0 chr21 13791119 13791150 -31116420 + AT_rich Low_complexity Low_complexity 1 31 0 2143 129 0 0 chr21 13791839 13792134 -31115436 + AluSx SINE Alu 1 295 -17 25 51 0 0 chr21 13792134 13792173 -31115397 + AT_rich Low_complexity Low_complexity 1 39 0 491 277 38 19 chr21 13792221 13792380 -31115190 + MARNA DNA Mariner 403 564 -22 716 279 158 0 chr21 13792538 13792760 -31114810 + MIR SINE MIR 3 259 -3 25 51 0 0 chr21 13793557 13793596 -31113974 + AT_rich Low_complexity Low_complexity 1 39 0 3230 229 21 44 chr21 13794258 13795191 -31112379 + L1ME1 LINE L1 5248 6162 -4 383 253 18 72 chr21 13795412 13795448 -31112122 - MLT1J2 LTR MaLR 0 450 414 2190 126 29 27 chr21 13795448 13795822 -31111748 - THE1C LTR MaLR 0 375 1 383 253 18 72 chr21 13795822 13795951 -31111619 - MLT1J2 LTR MaLR -36 414 294 390 271 0 58 chr21 13797338 13797493 -31110077 - MER117 DNA MER1_type -47 150 5 206 280 27 27 chr21 13797631 13797706 -31109864 - L2 LINE L2 -12 3260 3186 688 321 92 53 chr21 13797809 13798515 -31109055 + L2 LINE L2 2544 3267 -5 226 235 24 71 chr21 13798536 13798621 -31108949 - L2 LINE L2 -65 3248 3168 2188 109 0 0 chr21 13799116 13799410 -31108160 + AluSc SINE Alu 1 294 -15 22 0 0 0 chr21 13799849 13799871 -31107699 + AT_rich Low_complexity Low_complexity 1 22 0 240 333 73 21 chr21 13800488 13800584 -31106986 + MIR SINE MIR 22 122 -140 233 326 0 45 chr21 13801534 13801623 -31105947 - L2 LINE L2 -2 3311 3227 458 252 58 0 chr21 13801699 13801802 -31105768 + MER81 DNA DNA 1 109 -5 23 0 0 0 chr21 13802430 13802453 -31105117 + AT_rich Low_complexity Low_complexity 1 23 0 2585 190 42 2 chr21 13802466 13802965 -31104605 + LTR53 LTR ERVL 1 519 0 214 250 50 100 chr21 13803549 13803649 -31103921 - MIR3 SINE MIR 0 208 114 555 252 0 0 chr21 13804311 13804470 -31103100 + (CA)n Simple_repeat Simple_repeat 2 160 0 344 368 0 31 chr21 13805966 13806129 -31101441 - MIR SINE MIR -60 202 45 1022 225 198 65 chr21 13806131 13806626 -31100944 - MLT1E LTR MaLR -8 585 1 27 29 0 0 chr21 13806635 13806669 -31100901 + AT_rich Low_complexity Low_complexity 1 34 0 21 36 0 0 chr21 13806941 13806969 -31100601 + AT_rich Low_complexity Low_complexity 1 28 0 278 0 54 0 chr21 13807030 13807067 -31100503 + (TAAAA)n Simple_repeat Simple_repeat 3 41 0 183 42 0 0 chr21 13807573 13807597 -31099973 + (TTTG)n Simple_repeat Simple_repeat 2 25 0 1933 230 34 53 chr21 13807697 13808255 -31099315 - MER77 LTR ERV1 -4 566 53 305 233 23 12 chr21 13808624 13808710 -31098860 - LTR16C LTR ERVL 0 491 405 319 291 146 51 chr21 13809140 13809298 -31098272 - MER5A DNA MER1_type 0 189 17 455 307 21 0 chr21 13809578 13809718 -31097852 - MIR SINE MIR -11 251 109 275 266 0 0 chr21 13810001 13810065 -31097505 - MIR SINE MIR -12 250 187 1642 164 3 72 chr21 13810150 13810485 -31097085 + AluJb SINE Alu 1 312 0 276 286 41 31 chr21 13813403 13813501 -31094069 - MIR3 SINE MIR -6 202 104 364 307 58 22 chr21 13814236 13814373 -31093197 + L2 LINE L2 3125 3266 -6 202 293 67 13 chr21 13814382 13814457 -31093113 + L2 LINE L2 3145 3223 -49 194 342 125 8 chr21 13815918 13816038 -31091532 + L2 LINE L2 2610 2743 -571 351 301 49 25 chr21 13816836 13816999 -31090571 + L1 LINE L1 4891 5057 -1089 955 191 11 6 chr21 13818179 13818357 -31089213 - MER58A DNA MER1_type 0 224 46 948 305 61 27 chr21 13819278 13819917 -31087653 - L2 LINE L2 -5 3308 2636 1187 212 59 28 chr21 13819917 13820271 -31087299 - MLT1A1 LTR MaLR 0 365 1 948 305 61 27 chr21 13820271 13820376 -31087194 - L2 LINE L2 -677 2636 2536 21 71 0 0 chr21 13820757 13820799 -31086771 + AT_rich Low_complexity Low_complexity 1 42 0 930 259 102 99 chr21 13820826 13821392 -31086178 - MLT1F1 LTR MaLR 0 567 2 4386 152 57 10 chr21 13822014 13822543 -31085027 - L1MB2 LINE L1 -3 6168 5586 1914 139 30 3 chr21 13822543 13822838 -31084732 - AluSx SINE Alu -9 303 1 4386 152 57 10 chr21 13822838 13823122 -31084448 - L1MB2 LINE L1 -585 5586 5317 468 86 0 74 chr21 13823150 13823175 -31084395 - L1PB4 LINE L1 -1 6155 6130 2113 145 112 20 chr21 13823175 13823567 -31084003 + MSTA LTR MaLR 1 428 0 468 86 0 74 chr21 13823567 13823622 -31083948 - L1PB4 LINE L1 -26 6130 6081 727 167 21 62 chr21 13823622 13823814 -31083756 - L1MB2 LINE L1 -815 5331 5148 23 0 0 0 chr21 13824180 13824203 -31083367 + AT_rich Low_complexity Low_complexity 1 23 0 325 332 92 89 chr21 13824678 13824949 -31082621 - L2 LINE L2 -23 3249 2978 219 341 54 51 chr21 13824986 13825300 -31082270 - L2 LINE L2 -349 2965 2651 1493 142 15 192 chr21 13825302 13825781 -31081789 + MSTD LTR MaLR 3 396 0 322 334 236 28 chr21 13825958 13827775 -31079795 - L2 LINE L2 -911 2403 210 1008 140 28 0 chr21 13827783 13827962 -31079608 + L1MA5A LINE L1 6110 6293 -4 189 0 0 0 chr21 13827962 13827983 -31079587 + (TTAAA)n Simple_repeat Simple_repeat 3 23 0 632 231 113 27 chr21 13828741 13828927 -31078643 - MER5C DNA MER1_type -122 202 1 21 36 0 0 chr21 13830074 13830102 -31077468 + AT_rich Low_complexity Low_complexity 1 28 0 247 266 165 0 chr21 13830215 13830294 -31077276 - L2 LINE L2 -1 3312 3221 25 51 0 0 chr21 13831751 13831790 -31075780 + AT_rich Low_complexity Low_complexity 1 39 0 209 288 0 38 chr21 13831805 13831885 -31075685 + GA-rich Low_complexity Low_complexity 3 79 0 186 219 48 105 chr21 13831947 13832052 -31075518 + L2 LINE L2 2545 2643 -671 27 49 0 0 chr21 13833537 13833578 -31073992 + AT_rich Low_complexity Low_complexity 1 41 0 210 71 0 0 chr21 13833951 13833979 -31073591 + (TTTTG)n Simple_repeat Simple_repeat 2 29 0 342 233 133 0 chr21 13834505 13834625 -31072945 + L1ME3 LINE L1 6025 6160 -2 1348 13 0 0 chr21 13835756 13835910 -31071660 + L1PA5 LINE L1 5990 6143 -11 279 0 0 0 chr21 13835911 13835942 -31071628 + (TA)n Simple_repeat Simple_repeat 2 32 0 743 260 40 9 chr21 13836153 13836380 -31071190 + L1ME LINE L1 5545 5778 -343 2387 120 10 34 chr21 13836731 13837115 -31070455 - THE1C LTR MaLR 0 375 1 458 61 15 0 chr21 13837185 13837251 -31070319 + (TG)n Simple_repeat Simple_repeat 2 68 0 1602 123 4 4 chr21 13837662 13837889 -31069681 + AluSg/x SINE Alu 74 300 -12 7048 172 19 19 chr21 13838967 13840208 -31067362 - MER52A LTR ERV1 0 1755 515 783 256 45 10 chr21 13840244 13840443 -31067127 - MLT1A1 LTR MaLR -156 209 4 21 0 0 0 chr21 13840615 13840636 -31066934 + AT_rich Low_complexity Low_complexity 1 21 0 1266 180 66 11 chr21 13841343 13841615 -31065955 + LTR1 LTR ERV1 1 287 -498 2672 97 24 0 chr21 13841620 13841990 -31065580 + LTR1 LTR ERV1 407 785 0 21 36 0 0 chr21 13845224 13845252 -31062318 + AT_rich Low_complexity Low_complexity 1 28 0 444 310 84 0 chr21 13846038 13846193 -31061377 + MIR3 SINE MIR 40 207 -1 300 170 34 131 chr21 13846759 13846897 -31060673 + L1MC4a LINE L1 1001 1136 -5406 * 382 284 29 60 chr21 13846889 13847013 -31060557 + L1MC4a LINE L1 2393 2519 -4125 1849 174 0 6 chr21 13847013 13847324 -31060246 + AluSx SINE Alu 1 309 -3 382 284 29 60 chr21 13847324 13847630 -31059940 + L1MC4a LINE L1 2519 2762 -3882 1844 126 41 80 chr21 13847655 13848044 -31059526 + THE1C LTR MaLR 2 375 0 628 204 112 5 chr21 13848068 13848264 -31059306 - L1M4 LINE L1 -820 5326 5110 2304 241 67 23 chr21 13848304 13848514 -31059056 + L1ME1 LINE L1 5406 5605 -561 1463 178 68 44 chr21 13848514 13848880 -31058690 + THE1C LTR MaLR 1 375 0 2304 241 67 23 chr21 13848880 13849398 -31058172 + L1ME1 LINE L1 5605 6166 0 779 249 85 107 chr21 13849586 13850043 -31057527 - MER68 LTR ERV1 -114 448 2 313 322 66 7 chr21 13850130 13850282 -31057288 + LTR50 LTR ERVL 462 622 -173 491 304 96 5 chr21 13850739 13850959 -31056611 + L1MC4a LINE L1 4495 4734 -1910 189 0 0 0 chr21 13851836 13851857 -31055713 + (TA)n Simple_repeat Simple_repeat 1 21 0 2312 236 101 20 chr21 13851953 13852689 -31054881 - LTR50 LTR ERVL 0 795 1 28 48 0 0 chr21 13853143 13853185 -31054385 + AT_rich Low_complexity Low_complexity 1 42 0 1173 150 35 0 chr21 13853296 13853496 -31054074 - L1PA12 LINE L1 -1 6167 5961 324 270 94 61 chr21 13853588 13853871 -31053699 + L1MC4a LINE L1 6065 6354 -271 218 182 23 0 chr21 13853878 13853922 -31053648 - L2 LINE L2 0 3272 3228 204 40 0 0 chr21 13853990 13854015 -31053555 + (CA)n Simple_repeat Simple_repeat 2 26 0 392 315 112 16 chr21 13854870 13855145 -31052425 + L1ME LINE L1 5481 5711 -410 485 292 164 38 chr21 13855169 13855629 -31051941 + L2 LINE L2 2766 3301 -12 557 271 39 72 chr21 13855982 13856189 -31051381 - MIR SINE MIR 0 262 63 194 227 0 15 chr21 13856189 13856255 -31051315 + GA-rich Low_complexity Low_complexity 3 67 0 311 275 28 37 chr21 13856255 13856364 -31051206 - Tigger8 DNA MER2_type -538 128 21 189 289 0 0 chr21 13858118 13858163 -31049407 - MIR SINE MIR 0 262 218 433 304 83 30 chr21 13858173 13858403 -31049167 - L2 LINE L2 -1375 1939 1698 228 35 0 0 chr21 13858403 13858432 -31049138 + (T)n Simple_repeat Simple_repeat 1 29 0 195 377 127 8 chr21 13858563 13858815 -31048755 + L2 LINE L2 2256 2537 -777 4763 91 20 0 chr21 13858823 13859486 -31048084 + L1PA10 LINE L1 5488 6163 -5 414 293 134 0 chr21 13859576 13859740 -31047830 - LTR33A LTR ERVL -2 521 336 738 201 104 0 chr21 13859764 13859928 -31047642 + MER63A DNA MER1_type 1 181 -29 473 289 70 47 chr21 13859943 13860199 -31047371 - LTR33A LTR ERVL -255 268 7 213 292 15 15 chr21 13860288 13860353 -31047217 + L2 LINE L2 3208 3272 0 736 236 30 0 chr21 13860970 13861135 -31046435 - MER67A LTR ERV1 0 543 374 6051 213 82 12 chr21 13861135 13861597 -31045973 + L1MA3 LINE L1 18 446 -7119 2149 117 0 10 chr21 13861597 13861896 -31045674 - AluSq SINE Alu -17 296 1 6051 213 82 12 chr21 13861896 13862724 -31044846 + L1MA3 LINE L1 446 1337 -6228 * 10978 151 22 6 chr21 13862710 13865376 -31042194 + L1MA3 LINE L1 4674 7383 -341 755 291 148 12 chr21 13865675 13866012 -31041558 + L1MC/D LINE L1 5255 5637 -2171 1304 160 111 125 chr21 13867409 13867921 -31039649 - MLT1D LTR MaLR 0 505 1 405 267 0 0 chr21 13868057 13868143 -31039427 - MER58B DNA MER1_type 0 341 256 1746 222 64 35 chr21 13868146 13868632 -31038938 - MLT1D LTR MaLR -5 500 1 489 71 12 59 chr21 13868762 13868847 -31038723 - L1PA11 LINE L1 0 6174 6094 573 271 162 25 chr21 13869666 13869907 -31037663 - LTR50 LTR ERVL -2 793 586 1330 192 34 44 chr21 13869907 13870204 -31037366 - AluJo SINE Alu -17 295 2 573 271 162 25 chr21 13870204 13870516 -31037054 - LTR50 LTR ERVL -209 586 53 1333 99 6 0 chr21 13870621 13870793 -31036777 + AluSq SINE Alu 1 173 -140 23 0 0 0 chr21 13871682 13871705 -31035865 + AT_rich Low_complexity Low_complexity 1 23 0 286 75 0 0 chr21 13871907 13871947 -31035623 - L1PA3 LINE L1 -2702 3444 3405 16458 21 0 0 chr21 13871947 13874630 -31032940 + L1PA3 LINE L1 3468 6150 -5 1764 164 94 79 chr21 13875145 13875570 -31032000 + MER34C LTR ERV1 36 472 -113 3035 157 33 62 chr21 13875570 13876200 -31031370 + LTR9 LTR ERV1 1 612 0 1764 164 94 79 chr21 13876200 13876316 -31031254 + MER34C LTR ERV1 472 585 0 2373 122 145 94 chr21 13876518 13877147 -31030423 - MER4A LTR ERV1 -3 661 1 1569 290 20 46 chr21 13877334 13877570 -31030000 + MLT2F LTR ERVL 1 242 -421 1389 234 102 46 chr21 13877570 13878180 -31029390 - LTR48B LTR ERV1 0 644 1 1569 290 20 46 chr21 13878180 13878547 -31029023 + MLT2F LTR ERVL 242 588 -75 2247 214 48 28 chr21 13878577 13879248 -31028322 - MER21B LTR ERV1 -4 859 127 373 267 21 17 chr21 13879240 13879395 -31028175 - MER21B LTR ERV1 -400 205 11 * 27 0 0 0 chr21 13879472 13879499 -31028071 + AT_rich Low_complexity Low_complexity 1 27 0 1463 172 11 15 chr21 13879544 13879806 -31027764 - MLT1B LTR MaLR 0 390 130 1426 206 58 7 chr21 13879812 13880186 -31027384 + LTR32 LTR ERVL 17 471 0 599 172 82 0 chr21 13880186 13880306 -31027264 - MLT1B LTR MaLR -260 130 1 346 221 14 90 chr21 13880424 13880569 -31027001 + MER94 DNA DNA 1 134 0 314 380 4 52 chr21 13880570 13880799 -31026771 - L2 LINE L2 -219 3053 2836 1696 204 93 80 chr21 13881301 13882074 -31025496 + L1MC5 LINE L1 6858 7640 -321 228 318 22 73 chr21 13882109 13882243 -31025327 - L2 LINE L2 -1018 2296 2172 827 190 76 47 chr21 13882243 13882454 -31025116 - MER20 DNA MER1_type -2 217 1 228 318 22 73 chr21 13882454 13882498 -31025072 - L2 LINE L2 -1142 2172 2127 196 333 104 0 chr21 13882547 13882643 -31024927 + MIR SINE MIR 107 212 -50 1765 181 29 39 chr21 13883229 13883643 -31023927 - L1MB7 LINE L1 -9 6175 5766 1088 236 101 0 chr21 13883643 13883910 -31023660 + MLT1E LTR MaLR 300 593 0 390 42 0 0 chr21 13883933 13883981 -31023589 + (TG)n Simple_repeat Simple_repeat 1 48 0 1477 185 120 43 chr21 13885561 13885929 -31021641 - MSTD LTR MaLR 0 396 1 214 341 114 36 chr21 13885930 13886097 -31021473 - MER5A DNA MER1_type -7 182 3 222 226 20 20 chr21 13886766 13886868 -31020702 + CT-rich Low_complexity Low_complexity 4 105 0 1906 98 33 4 chr21 13887461 13887737 -31019833 + L1PA11 LINE L1 5884 6167 -7 24 0 0 0 chr21 13887778 13887802 -31019768 + AT_rich Low_complexity Low_complexity 1 24 0 249 362 43 0 chr21 13887996 13888134 -31019436 + HAL1b LINE L1 379 522 -826 2442 61 0 0 chr21 13888162 13888456 -31019114 + AluSp SINE Alu 18 311 -2 736 293 44 20 chr21 13888572 13888821 -31018749 - MIR SINE MIR -1 261 7 2859 140 29 2 chr21 13888959 13889451 -31018119 + L1MA9 LINE L1 5808 6312 0 1278 157 5 0 chr21 13889838 13890042 -31017528 + MER2 DNA MER2_type 2 206 -139 27 0 0 0 chr21 13890050 13890077 -31017493 + AT_rich Low_complexity Low_complexity 1 27 0 394 306 126 44 chr21 13890208 13890414 -31017156 + MIR SINE MIR 14 236 -26 267 31 0 0 chr21 13890446 13890478 -31017092 + (TA)n Simple_repeat Simple_repeat 2 33 0 2967 231 82 36 chr21 13890816 13891921 -31015649 + L1ME3A LINE L1 5022 6170 0 21 36 0 0 chr21 13892081 13892109 -31015461 + AT_rich Low_complexity Low_complexity 1 28 0 904 241 54 5 chr21 13892252 13892455 -31015115 - MER20 DNA MER1_type 0 219 7 683 199 137 5 chr21 13892873 13893089 -31014481 - MER33 DNA MER1_type -248 76 1 291 218 36 45 chr21 13893193 13893303 -31014267 + L1M4 LINE L1 3717 3825 -2321 1883 150 44 0 chr21 13893421 13893715 -31013855 - AluSx SINE Alu -3 309 3 25 0 0 0 chr21 13893884 13893909 -31013661 + AT_rich Low_complexity Low_complexity 1 25 0 21 57 0 0 chr21 13894009 13894044 -31013526 + AT_rich Low_complexity Low_complexity 1 35 0 3307 92 20 2 chr21 13894257 13894702 -31012868 + MLT2A2 LTR ERVL 1 453 0 41668 80 17 19 chr21 13894702 13900369 -31007201 + HERVL-A2 LTR ERVL 1 5654 0 2882 92 37 48 chr21 13900370 13900827 -31006743 + MLT2A2 LTR ERVL 2 453 0 281 209 0 0 chr21 13900851 13900918 -31006652 + L1ME LINE L1 5771 5837 -284 183 139 0 0 chr21 13901236 13901272 -31006298 + (T)n Simple_repeat Simple_repeat 1 36 0 222 339 104 37 chr21 13901364 13901510 -31006060 + L2 LINE L2 2417 2552 -762 3839 145 34 32 chr21 13901510 13902226 -31005344 - LTR62 LTR ERVK 0 719 3 222 339 104 37 chr21 13902226 13902377 -31005193 + L2 LINE L2 2552 2734 -580 232 336 26 17 chr21 13902898 13903014 -31004556 + L2 LINE L2 2935 3051 -221 2543 72 0 0 chr21 13903203 13903510 -31004060 + AluY SINE Alu 3 309 -2 375 113 0 0 chr21 13903707 13903769 -31003801 + (GGAA)n Simple_repeat Simple_repeat 3 64 0 233 289 79 13 chr21 13904136 13904212 -31003358 + L2 LINE L2 3150 3230 -42 272 296 9 28 chr21 13904764 13904872 -31002698 + LTR48B LTR ERV1 1 106 -538 * 1444 202 63 95 chr21 13904857 13905211 -31002359 + MER39 LTR ERV1 219 554 -153 2192 136 0 0 chr21 13905211 13905520 -31002050 - AluSx SINE Alu -1 311 3 1444 202 63 95 chr21 13905520 13905670 -31001900 + MER39 LTR ERV1 554 707 0 184 344 111 0 chr21 13906204 13906294 -31001276 + MIR SINE MIR 36 135 -73 1657 199 0 7 chr21 13906443 13906750 -31000820 - AluJb SINE Alu -7 305 1 200 287 209 17 chr21 13907558 13907673 -30999897 + MIR3 SINE MIR 3 139 -69 1813 144 23 30 chr21 13907861 13908166 -30999404 - AluSx SINE Alu -9 303 1 1842 127 65 4 chr21 13908650 13908926 -30998644 - AluSx SINE Alu -19 293 1 224 371 103 38 chr21 13909119 13909332 -30998238 - MIR SINE MIR -17 245 19 189 0 0 0 chr21 13909405 13909426 -30998144 + (ATTG)n Simple_repeat Simple_repeat 4 24 0 1890 146 11 0 chr21 13909426 13909701 -30997869 - AluSq SINE Alu -32 281 4 209 339 39 24 chr21 13909868 13909995 -30997575 - MIR SINE MIR -123 139 11 21 36 0 0 chr21 13910018 13910046 -30997524 + AT_rich Low_complexity Low_complexity 1 28 0 884 245 67 46 chr21 13911061 13911432 -30996138 + MER39 LTR ERV1 67 609 -98 9855 135 12 21 chr21 13911433 13914173 -30993397 + L1MA1 LINE L1 3579 6295 -7 371 212 59 25 chr21 13914181 13914299 -30993271 + MER39 LTR ERV1 586 707 0 226 355 65 0 chr21 13914320 13914413 -30993157 + L2 LINE L2 3174 3272 0 2288 79 3 22 chr21 13914568 13914911 -30992659 - AluY SINE Alu 0 337 1 6178 80 0 5 chr21 13914935 13915281 -30992289 - L1PB1 LINE L1 0 6151 5805 327 85 0 0 chr21 13915281 13915328 -30992242 + (TG)n Simple_repeat Simple_repeat 1 47 0 6178 80 0 5 chr21 13915328 13915929 -30991641 - L1PB1 LINE L1 -346 5805 5187 1373 247 9 0 chr21 13915934 13916278 -30991292 + L1PB1 LINE L1 4833 5179 -967 190 286 122 20 chr21 13916300 13916398 -30991172 + MIR SINE MIR 39 146 -62 1231 174 37 30 chr21 13916400 13916670 -30990900 + MLT2D LTR ERVL 1 272 -142 667 250 143 10 chr21 13916726 13916922 -30990648 - MLT1H LTR MaLR -327 222 1 30 45 0 0 chr21 13918364 13918408 -30989162 + AT_rich Low_complexity Low_complexity 1 44 0 2312 163 32 12 chr21 13919183 13919589 -30987981 + MLT2C2 LTR ERVL 3 416 -48 348 43 0 0 chr21 13919594 13919640 -30987930 + (TC)n Simple_repeat Simple_repeat 1 46 0 453 19 0 0 chr21 13919640 13919694 -30987876 + (TG)n Simple_repeat Simple_repeat 2 55 0 367 216 0 43 chr21 13923646 13923831 -30983739 + (TAAA)n Simple_repeat Simple_repeat 4 180 0 67 55 0 0 chr21 13923838 13923947 -30983623 + AT_rich Low_complexity Low_complexity 1 109 0 960 143 87 6 chr21 13923947 13924108 -30983462 - AluSq SINE Alu -138 175 2 10483 198 65 26 chr21 13924496 13926671 -30980899 + L1MC1 LINE L1 24 2114 -4499 890 267 8 102 chr21 13926671 13927072 -30980498 + MLT1A1 LTR MaLR 1 363 -2 10483 198 65 26 chr21 13927072 13928236 -30979334 + L1MC1 LINE L1 2114 3232 -3381 2516 50 0 0 chr21 13928236 13928536 -30979034 + AluY SINE Alu 2 301 -10 10483 198 65 26 chr21 13928536 13930303 -30977267 + L1MC1 LINE L1 3232 4930 -1683 1299 142 41 5 chr21 13930303 13930522 -30977048 - MER30 DNA MER1_type -1 229 3 10483 198 65 26 chr21 13930522 13931102 -30976468 + L1MC1 LINE L1 4930 5486 -1127 2877 177 60 6 chr21 13931102 13931581 -30975989 + MLT2B3 LTR ERVL 3 514 -40 723 10 31 0 chr21 13931581 13931677 -30975893 + (TCTA)n Simple_repeat Simple_repeat 3 101 0 2877 177 60 6 chr21 13931677 13931718 -30975852 + MLT2B3 LTR ERVL 514 551 -3 10483 198 65 26 chr21 13931718 13932024 -30975546 + L1MC1 LINE L1 5486 6255 -358 593 200 0 0 chr21 13932025 13932130 -30975440 + U6 snRNA snRNA 2 106 -1 1084 164 9 37 chr21 13932135 13932349 -30975221 + L1MC1 LINE L1 6396 6603 -10 22 0 0 0 chr21 13932355 13932377 -30975193 + AT_rich Low_complexity Low_complexity 1 22 0 211 196 87 0 chr21 13933183 13933229 -30974341 + L2 LINE L2 3263 3312 -1 222 347 32 0 chr21 13933707 13933812 -30973758 + MIR SINE MIR 34 141 -67 1834 178 0 13 chr21 13935069 13935373 -30972197 - AluJo SINE Alu -12 300 1 314 352 80 5 chr21 13935430 13935629 -30971941 - MIR SINE MIR -2 260 47 2270 111 0 13 chr21 13936777 13937093 -30970477 - AluSx SINE Alu 0 312 1 2198 100 0 0 chr21 13937177 13937466 -30970104 - AluSc SINE Alu 0 309 21 322 319 0 18 chr21 13937504 13937617 -30969953 - MER34 LTR ERV1 -431 111 1 1997 174 11 19 chr21 13938619 13938987 -30968583 - MLT1A1 LTR MaLR 0 365 1 470 321 190 5 chr21 13940667 13940888 -30966682 - MIR SINE MIR 0 262 1 2213 111 74 11 chr21 13941003 13941356 -30966214 - THE1C LTR MaLR 0 375 1 28 0 0 0 chr21 13941604 13941632 -30965938 + AT_rich Low_complexity Low_complexity 1 28 0 1626 184 0 14 chr21 13943045 13943327 -30964243 + AluJb SINE Alu 1 278 -34 393 149 0 0 chr21 13943327 13943394 -30964176 + (CA)n Simple_repeat Simple_repeat 2 68 0 351 113 0 0 chr21 13943397 13943450 -30964120 + (GGAA)n Simple_repeat Simple_repeat 2 54 0 281 280 160 0 chr21 13943606 13943706 -30963864 + MIR SINE MIR 72 187 -75 25 65 0 0 chr21 13944299 13944345 -30963225 + AT_rich Low_complexity Low_complexity 1 46 0 22 0 0 0 chr21 13944709 13944731 -30962839 + AT_rich Low_complexity Low_complexity 1 22 0 351 0 0 0 chr21 13946195 13946234 -30961336 + (CA)n Simple_repeat Simple_repeat 2 40 0 * 393 39 0 0 chr21 13946233 13946284 -30961286 + (GA)n Simple_repeat Simple_repeat 2 52 0 423 0 0 0 chr21 13946995 13947042 -30960528 + (TG)n Simple_repeat Simple_repeat 1 47 0 2153 135 0 0 chr21 13947366 13947670 -30959900 + AluSx SINE Alu 1 304 -8 4524 158 38 11 chr21 13947969 13948934 -30958636 + L1MB3 LINE L1 5115 6101 -82 864 146 0 0 chr21 13948934 13949064 -30958506 + FRAM SINE Alu 28 157 -19 23 42 0 21 chr21 13949064 13949075 -30958495 + AT_rich Low_complexity Low_complexity 1 11 -36 402 143 71 0 chr21 13949075 13949159 -30958411 + L1MB3 LINE L1 6094 6183 0 23 42 0 21 chr21 13949159 13949195 -30958375 + AT_rich Low_complexity Low_complexity 11 47 0 1855 143 161 11 chr21 13951148 13951520 -30956050 - MSTA LTR MaLR 0 428 1 289 349 18 9 chr21 13951547 13951656 -30955914 - L3 LINE CR1 -30 1547 1438 22179 73 6 1 chr21 13951733 13954573 -30952997 - HERVL-A1 LTR ERVL -2798 2856 3 2864 86 19 62 chr21 13954575 13955039 -30952531 - MLT2A1 LTR ERVL 0 444 1 883 103 15 0 chr21 13955070 13955206 -30952364 - L1MB7 LINE L1 -9 6175 6038 3209 126 68 18 chr21 13956342 13956889 -30950681 + MER4B LTR ERV1 37 610 0 196 333 0 0 chr21 13957529 13957589 -30949981 - L2 LINE L2 0 3272 3213 1955 141 0 0 chr21 13958034 13958360 -30949210 - AluJb SINE Alu 0 326 1 960 88 13 6 chr21 13958440 13958599 -30948971 + (TTCC)n Simple_repeat Simple_repeat 2 161 0 182 313 0 31 chr21 13959410 13959474 -30948096 + L3 LINE CR1 1414 1475 -102 195 156 178 0 chr21 13959972 13960017 -30947553 + MIR SINE MIR 210 262 0 508 215 209 17 chr21 13960116 13960293 -30947277 - MER112 DNA MER1_type -33 227 17 1971 205 74 13 chr21 13960669 13961143 -30946427 - MLT1D LTR MaLR 0 505 3 23 0 0 0 chr21 13962135 13962158 -30945412 + AT_rich Low_complexity Low_complexity 1 23 0 350 340 165 10 chr21 13962380 13962574 -30944996 + MIR SINE MIR 26 249 -13 1994 117 3 29 chr21 13962633 13962940 -30944630 + AluSx SINE Alu 7 305 -7 2236 96 3 0 chr21 13963104 13963397 -30944173 - AluY SINE Alu -17 294 1 232 320 40 0 chr21 13963470 13963595 -30943975 + L1ME3 LINE L1 4908 5037 -1109 208 209 23 0 chr21 13963602 13963645 -30943925 + (TA)n Simple_repeat Simple_repeat 2 45 0 257 236 28 0 chr21 13963646 13963718 -30943852 + L1MD3 LINE L1 7030 7103 -892 236 231 128 86 chr21 13963718 13963835 -30943735 + MLT1F1 LTR MaLR 10 131 -436 2313 229 31 9 chr21 13963835 13964407 -30943163 + L1MD3 LINE L1 7411 7995 0 2298 78 7 3 chr21 13964448 13964743 -30942827 - AluY SINE Alu -15 296 1 302 267 30 30 chr21 13964804 13964935 -30942635 + L1ME3 LINE L1 5121 5251 -895 807 294 115 20 chr21 13964956 13965555 -30942015 + L1ME3 LINE L1 5296 5951 -211 1984 168 11 38 chr21 13965592 13965961 -30941609 + MLT1A1 LTR MaLR 1 359 -6 181 300 153 60 chr21 13966816 13966966 -30940604 - L2 LINE L2 -620 2694 2531 262 326 89 37 chr21 13968107 13968242 -30939328 + L2 LINE L2 3163 3304 -9 240 305 12 0 chr21 13969351 13969433 -30938137 + (TA)n Simple_repeat Simple_repeat 2 84 0 504 292 21 0 chr21 13969900 13970044 -30937526 + L1MEc LINE L1 1924 2070 -4326 2430 33 0 0 chr21 13970495 13970770 -30936800 - AluY SINE Alu -16 295 21 619 277 59 46 chr21 13972083 13972321 -30935249 - MIR SINE MIR -7 255 15 426 297 46 50 chr21 13972377 13972616 -30934954 - L1MC/D LINE L1 -2050 5758 5521 2166 125 0 0 chr21 13972944 13973248 -30934322 - AluSx SINE Alu -8 304 1 30 27 0 0 chr21 13973600 13973637 -30933933 + AT_rich Low_complexity Low_complexity 1 37 0 305 315 92 33 chr21 13973720 13973904 -30933666 - MIR SINE MIR -18 244 50 2321 61 0 0 chr21 13974085 13974364 -30933206 - AluY SINE Alu -32 279 1 3078 128 0 0 chr21 13975212 13975682 -30931888 - L1PB1 LINE L1 -4 6147 5678 1654 122 15 0 chr21 13976609 13976879 -30930691 + L1MA2 LINE L1 6031 6304 0 1134 175 41 26 chr21 13977011 13977280 -30930290 - MER97a DNA MER1_type? -191 703 431 378 0 0 0 chr21 13977284 13977326 -30930244 + (TG)n Simple_repeat Simple_repeat 2 43 0 1021 197 59 16 chr21 13977351 13977605 -30929965 - MER97c DNA MER1_type? -758 332 68 261 328 119 15 chr21 13978048 13978182 -30929388 + MIR SINE MIR 60 207 -55 1801 146 101 5 chr21 13978262 13978661 -30928909 + LTR23 LTR ERV1 1 467 0 1487 163 19 19 chr21 13979465 13979729 -30927841 + AluJo SINE Alu 6 269 -43 227 160 67 0 chr21 13979733 13979808 -30927762 + (TA)n Simple_repeat Simple_repeat 2 81 0 22 35 0 0 chr21 13981041 13981070 -30926500 + AT_rich Low_complexity Low_complexity 1 29 0 243 227 91 30 chr21 13981935 13982001 -30925569 - MIR SINE MIR -111 151 82 1433 172 0 104 chr21 13982004 13982342 -30925228 + AluJo SINE Alu 1 303 -9 1718 167 0 56 chr21 13982490 13982813 -30924757 + AluJo SINE Alu 1 305 -7 1976 174 40 0 chr21 13982851 13983202 -30924368 + MLT1A1 LTR MaLR 1 365 0 1198 198 28 0 chr21 13983455 13983672 -30923898 - AluJo SINE Alu -21 291 69 1542 216 0 0 chr21 13984240 13984536 -30923034 - AluJo SINE Alu -11 301 6 21 0 0 0 chr21 13985165 13985186 -30922384 + AT_rich Low_complexity Low_complexity 1 21 0 333 47 0 0 chr21 13985311 13985354 -30922216 + (CA)n Simple_repeat Simple_repeat 2 44 0 2360 77 3 19 chr21 13986671 13986981 -30920589 + AluSp SINE Alu 1 305 -8 2227 107 7 0 chr21 13987906 13988214 -30919356 - AluSx SINE Alu 0 312 3 588 332 34 25 chr21 13989173 13989619 -30917951 - MLT1K LTR MaLR -3 612 136 4665 67 17 33 chr21 13989931 13990574 -30916996 - SVA Other Other 0 1386 754 2276 70 0 14 chr21 13991243 13991554 -30916016 - AluY SINE Alu 0 307 1 1879 153 0 0 chr21 13991556 13991850 -30915720 - AluSx SINE Alu -18 294 1 1391 155 33 19 chr21 13993487 13993804 -30913766 + MLT1A1 LTR MaLR 11 365 0 573 255 2 14 chr21 13993809 13993974 -30913596 - MLT1B LTR MaLR 0 390 251 573 226 12 76 chr21 13994437 13994672 -30912898 + MLT1F LTR MaLR 1 202 -340 808 179 123 49 chr21 13994677 13994907 -30912663 + MLT1F LTR MaLR 320 540 -2 447 293 93 29 chr21 13995301 13995581 -30911989 - L1ME LINE L1 -336 5785 5488 1667 214 50 60 chr21 13995967 13996452 -30911118 + L1MC4 LINE L1 6765 7244 -798 31 0 0 0 chr21 13996524 13996555 -30911015 + AT_rich Low_complexity Low_complexity 1 31 0 333 0 0 0 chr21 13996576 13996613 -30910957 + (CA)n Simple_repeat Simple_repeat 2 38 0 1648 206 52 3 chr21 13996613 13996939 -30910631 - MLT2C1 LTR ERVL -55 342 1 1523 240 131 52 chr21 13996939 13997246 -30910324 + L1MC4 LINE L1 7257 7538 -504 2167 102 7 7 chr21 13997246 13997539 -30910031 + AluSg SINE Alu 6 298 -12 1523 240 131 52 chr21 13997539 13997947 -30909623 + L1MC4 LINE L1 7538 8029 -13 1233 183 9 9 chr21 13998436 13998666 -30908904 - AluJb SINE Alu -5 307 78 24 0 0 0 chr21 13999496 13999520 -30908050 + AT_rich Low_complexity Low_complexity 1 24 0 475 276 268 22 chr21 14000083 14000685 -30906885 + L2 LINE L2 2542 3313 0 464 306 108 52 chr21 14001326 14001806 -30905764 - L2 LINE L2 0 3313 2807 23 0 0 0 chr21 14002208 14002231 -30905339 + AT_rich Low_complexity Low_complexity 1 23 0 463 293 160 0 chr21 14002351 14002501 -30905069 + MER5A DNA MER1_type 9 182 -7 1830 207 47 51 chr21 14003108 14003615 -30903955 - MLT1D LTR MaLR 0 505 1 357 316 59 53 chr21 14004405 14004898 -30902672 + L2 LINE L2 1613 2108 -1206 1903 208 11 0 chr21 14004934 14005295 -30902275 + MLT1A1 LTR MaLR 1 365 0 306 49 0 0 chr21 14006070 14006113 -30901457 - AluS SINE Alu -218 85 49 483 101 13 0 chr21 14006784 14006863 -30900707 - MADE1 DNA Mariner 0 80 1 2148 135 0 0 chr21 14007170 14007521 -30900049 - AluSx SINE Alu 0 351 1 820 250 48 0 chr21 14007659 14007847 -30899723 + MER20 DNA MER1_type 22 218 -1 1559 208 16 13 chr21 14008172 14008536 -30899034 + AluJo SINE Alu 3 367 0 260 189 14 0 chr21 14009269 14009343 -30898227 + (CCA)n Simple_repeat Simple_repeat 1 75 0 211 267 0 0 chr21 14009368 14009413 -30898157 + (CCA)n Simple_repeat Simple_repeat 3 47 0 4049 182 18 24 chr21 14010115 14010896 -30896674 - LTR39 LTR ERV1 -7 776 1 602 51 13 0 chr21 14010955 14011034 -30896536 - MADE1 DNA Mariner 0 80 1 5083 165 47 18 chr21 14012500 14013602 -30893968 + L1MC2 LINE L1 5200 6332 -12 274 250 36 71 chr21 14014578 14014690 -30892880 - LTR43 LTR ERV1 -313 289 182 8231 84 40 18 chr21 14014946 14016892 -30890678 + L1PA7 LINE L1 4187 6153 -1 34 24 0 0 chr21 14017058 14017099 -30890471 + AT_rich Low_complexity Low_complexity 1 41 0 2051 247 204 43 chr21 14017161 14017240 -30890330 - L2 LINE L2 -910 2404 2339 2580 98 13 16 chr21 14017240 14017616 -30889954 - THE1C LTR MaLR 0 375 1 2051 247 204 43 chr21 14017616 14018509 -30889061 - L2 LINE L2 -975 2339 1276 2481 238 54 62 chr21 14019650 14020373 -30887197 + L1MCb LINE L1 1 717 -5425 2647 146 19 9 chr21 14020373 14020797 -30886773 + MSTC LTR MaLR 1 428 0 2481 238 54 62 chr21 14020797 14021370 -30886200 + L1MCb LINE L1 717 1293 -4849 373 299 90 28 chr21 14022202 14022346 -30885224 + MER5B DNA MER1_type 26 178 0 201 39 0 0 chr21 14022414 14022440 -30885130 + (CA)n Simple_repeat Simple_repeat 2 27 0 243 125 0 0 chr21 14022440 14022480 -30885090 + (TC)n Simple_repeat Simple_repeat 1 40 0 2110 102 85 20 chr21 14022863 14023205 -30884365 + THE1B LTR MaLR 1 364 0 2925 113 7 9 chr21 14023435 14023876 -30883694 + L1PA16 LINE L1 5718 6157 -9 2101 137 0 0 chr21 14023897 14024189 -30883381 + AluSx SINE Alu 1 292 -20 246 253 0 0 chr21 14024191 14024270 -30883300 - L1MC4 LINE L1 -1350 6692 6614 333 0 0 0 chr21 14024270 14024307 -30883263 + (GA)n Simple_repeat Simple_repeat 2 38 0 699 243 90 31 chr21 14025571 14025793 -30881777 - MIR SINE MIR -10 252 18 251 337 48 0 chr21 14025788 14025871 -30881699 + MER5A DNA MER1_type 9 95 -94 * 2238 95 0 0 chr21 14026080 14026386 -30881184 + AluSx SINE Alu 2 307 0 483 156 0 0 chr21 14026400 14026477 -30881093 + U13 snRNA snRNA 1 77 -27 504 0 0 0 chr21 14026678 14026734 -30880836 + (CA)n Simple_repeat Simple_repeat 2 57 0 751 244 13 0 chr21 14026746 14026902 -30880668 - FAM SINE Alu -17 158 1 5105 146 19 3 chr21 14027856 14028712 -30878858 - L1MA4 LINE L1 -24 6276 5408 828 134 21 70 chr21 14028752 14028938 -30878632 + L1M1 LINE L1 5254 5430 -870 1747 188 7 3 chr21 14029799 14030103 -30877467 + AluJo SINE Alu 1 305 -7 1864 173 7 0 chr21 14030221 14030528 -30877042 + AluJo SINE Alu 1 309 -3 2222 113 3 3 chr21 14030670 14030979 -30876591 - AluSx SINE Alu -3 309 1 21 57 0 0 chr21 14031966 14032001 -30875569 + AT_rich Low_complexity Low_complexity 1 35 0 342 0 0 0 chr21 14032120 14032158 -30875412 + (TG)n Simple_repeat Simple_repeat 2 39 0 2405 67 3 3 chr21 14032749 14033047 -30874523 + AluSp SINE Alu 1 298 -15 211 277 32 24 chr21 14033378 14033463 -30874107 + MER5B DNA MER1_type 47 143 -46 4859 115 1 6 chr21 14035902 14036635 -30870935 + L1PA14 LINE L1 5430 6159 -2 2242 105 0 0 chr21 14036829 14037115 -30870455 - AluY SINE Alu -25 286 1 200 200 36 36 chr21 14037395 14037450 -30870120 + MIR3 SINE MIR 3 57 -151 387 229 101 80 chr21 14037510 14037698 -30869872 + MIR SINE MIR 70 261 -1 415 86 129 0 chr21 14037710 14037780 -30869790 + MADE1 DNA Mariner 2 80 0 2182 181 16 41 chr21 14037796 14037980 -30869590 + MSTB1 LTR MaLR 1 188 -244 2287 92 3 16 chr21 14037980 14038295 -30869275 - AluY SINE Alu 0 311 1 2182 181 16 41 chr21 14038295 14038553 -30869017 + MSTB1 LTR MaLR 188 432 0 23 0 0 0 chr21 14038571 14038594 -30868976 + AT_rich Low_complexity Low_complexity 1 23 0 1042 212 89 43 chr21 14039020 14039412 -30868158 - Charlie1 DNA MER1_type 0 2761 2352 2886 200 7 2 chr21 14039526 14040137 -30867433 - MSTB1-int LTR MaLR -1037 614 1 2354 142 58 22 chr21 14040137 14040554 -30867016 - MSTB1 LTR MaLR 0 432 1 500 295 74 41 chr21 14040563 14040807 -30866763 + MIR SINE MIR 2 253 -9 388 284 134 0 chr21 14041852 14041986 -30865584 - MIR SINE MIR -8 254 103 862 278 73 53 chr21 14041986 14042029 -30865541 - LTR33A LTR ERVL -4 519 478 1991 242 78 5 chr21 14042029 14042629 -30864941 + LTR48B LTR ERV1 1 644 0 862 278 73 53 chr21 14042629 14043092 -30864478 - LTR33A LTR ERVL -45 478 3 222 91 227 0 chr21 14043092 14043136 -30864434 - MIR SINE MIR -137 125 72 1666 197 31 31 chr21 14043730 14044120 -30863450 + MLT1B LTR MaLR 1 390 0 1924 130 7 7 chr21 14044462 14044761 -30862809 - AluSx SINE Alu -13 299 1 401 188 0 38 chr21 14044922 14045002 -30862568 + FLAM_A SINE Alu 17 93 -49 1635 191 14 69 chr21 14045199 14045618 -30861952 - MSTD LTR MaLR 0 396 1 343 321 175 40 chr21 14047526 14047903 -30859667 - L1M2 LINE L1 -5895 954 527 249 33 0 0 chr21 14048100 14048130 -30859440 + (CCG)n Simple_repeat Simple_repeat 3 32 0 26 30 0 0 chr21 14048245 14048278 -30859292 + GC_rich Low_complexity Low_complexity 1 33 0 267 133 0 0 chr21 14048700 14048745 -30858825 + (T)n Simple_repeat Simple_repeat 1 45 0 233 195 143 52 chr21 14049837 14049914 -30857656 - L3 LINE CR1 -2 1575 1492 24 103 0 0 chr21 14050389 14050476 -30857094 + AT_rich Low_complexity Low_complexity 1 87 0 23 0 0 0 chr21 14050870 14050893 -30856677 + GC_rich Low_complexity Low_complexity 1 23 0 295 229 16 0 chr21 14051051 14051112 -30856458 + L2 LINE L2 3247 3308 -5 716 139 9 0 chr21 14051195 14051303 -30856267 + AluJb SINE Alu 1 109 -203 2326 88 0 10 chr21 14051304 14051611 -30855959 + AluSg SINE Alu 2 305 -5 435 295 70 62 chr21 14052619 14052860 -30854710 - MIR SINE MIR -19 243 1 27 49 0 0 chr21 14052912 14052953 -30854617 + AT_rich Low_complexity Low_complexity 1 41 0 1809 158 18 18 chr21 14052969 14053299 -30854271 - MER2 DNA MER2_type 0 345 16 360 64 0 0 chr21 14053709 14053756 -30853814 + (TG)n Simple_repeat Simple_repeat 2 48 0 1814 152 0 0 chr21 14053850 14054113 -30853457 - AluSx SINE Alu -20 292 30 40 49 0 0 chr21 14054341 14054402 -30853168 + AT_rich Low_complexity Low_complexity 1 61 0 21 36 0 0 chr21 14054577 14054605 -30852965 + AT_rich Low_complexity Low_complexity 1 28 0 22 0 0 0 chr21 14055036 14055058 -30852512 + AT_rich Low_complexity Low_complexity 1 22 0 871 311 119 31 chr21 14055359 14055519 -30852051 - L1M4 LINE L1 -1050 5096 4952 945 172 8 107 chr21 14055519 14055781 -30851789 - MER46A DNA MER2_type 0 236 1 871 311 119 31 chr21 14055781 14056273 -30851297 - L1M4 LINE L1 -1194 4952 4386 271 234 94 23 chr21 14056291 14056419 -30851151 - L1M4 LINE L1 -1796 4350 4214 1651 195 73 25 chr21 14056440 14056876 -30850694 + LTR2B LTR ERV1 34 490 0 325 327 45 0 chr21 14056902 14057012 -30850558 - L1M4 LINE L1 -1963 4183 4069 388 319 50 7 chr21 14057868 14058009 -30849561 + MER5A DNA MER1_type 43 189 0 297 0 0 0 chr21 14058386 14058419 -30849151 + (T)n Simple_repeat Simple_repeat 1 33 0 1519 253 84 34 chr21 14058718 14059392 -30848178 - L1ME2 LINE L1 -112 6052 5348 455 298 13 0 chr21 14060455 14060606 -30846964 - MER52A LTR ERV1 0 1755 1603 589 247 20 63 chr21 14060611 14060866 -30846704 - MER52A LTR ERV1 -281 1474 1231 571 259 183 39 chr21 14060990 14061510 -30846060 - LTR28 LTR ERV1 -458 1297 16 1548 148 51 4 chr21 14062063 14062319 -30845251 - AluSx SINE Alu -5 307 40 2093 125 3 0 chr21 14062329 14062632 -30844938 - AluSq SINE Alu -9 304 1 201 175 0 0 chr21 14062775 14062815 -30844755 + CT-rich Low_complexity Low_complexity 2 41 0 1618 223 115 63 chr21 14062939 14063207 -30844363 - L1M4 LINE L1 -755 5391 5138 2455 80 3 3 chr21 14063207 14063520 -30844050 - AluSq SINE Alu 0 313 1 1618 223 115 63 chr21 14063520 14064211 -30843359 - L1M4 LINE L1 -1008 5138 4369 1624 109 0 13 chr21 14064211 14064440 -30843130 - AluSc SINE Alu -83 226 1 1618 223 115 63 chr21 14064440 14064544 -30843026 - L1M4 LINE L1 -1777 4369 4272 378 245 41 0 chr21 14064604 14064702 -30842868 - L1M4 LINE L1 -2024 4122 4021 363 271 42 28 chr21 14064789 14064933 -30842637 - L1M LINE L1 -842 5400 5255 465 229 0 0 chr21 14064951 14065047 -30842523 - Tigger7 DNA MER2_type 0 2487 2392 350 81 65 0 chr21 14065144 14065206 -30842364 - Tigger7 DNA MER2_type -79 2408 2343 586 105 70 99 chr21 14065213 14065384 -30842186 - Tigger7 DNA MER2_type -78 2509 2344 * 910 203 124 33 chr21 14065381 14065622 -30841948 - Tigger7 DNA MER2_type -287 263 1 346 324 71 13 chr21 14065622 14065847 -30841723 - L1ME2 LINE L1 -905 5241 5004 25 0 0 28 chr21 14066025 14066039 -30841531 + AT_rich Low_complexity Low_complexity 1 14 -21 1562 180 3 62 chr21 14066039 14066344 -30841226 - AluJo SINE Alu -25 287 1 25 0 0 28 chr21 14066344 14066365 -30841205 + AT_rich Low_complexity Low_complexity 14 35 0 22 0 0 0 chr21 14066757 14066779 -30840791 + AT_rich Low_complexity Low_complexity 1 22 0 752 208 105 82 chr21 14067627 14067921 -30839649 + MER21B LTR ERV1 1 301 -562 285 29 0 0 chr21 14067926 14067960 -30839610 + (TG)n Simple_repeat Simple_repeat 2 35 0 2047 137 6 25 chr21 14067960 14068274 -30839296 - AluSx SINE Alu -4 308 1 2310 68 0 39 chr21 14068355 14068662 -30838908 - AluY SINE Alu -16 295 1 2129 105 7 0 chr21 14069688 14069973 -30837597 - AluSq SINE Alu -22 291 5 2291 81 14 0 chr21 14069973 14070258 -30837312 - AluSg SINE Alu -21 289 1 376 199 71 9 chr21 14071445 14071616 -30835954 - LTR48 LTR ERV1 -3 738 450 304 216 59 10 chr21 14071653 14071755 -30835815 - LTR48 LTR ERV1 -302 485 379 803 217 126 0 chr21 14071771 14071978 -30835592 - MER34C LTR ERV1 -352 233 1 320 288 50 12 chr21 14072074 14072154 -30835416 - L2 LINE L2 0 3272 3190 2655 189 80 34 chr21 14073434 14074169 -30833401 - LTR48 LTR ERV1 -24 742 1 197 313 0 0 chr21 14074393 14074441 -30833129 + L2 LINE L2 3242 3289 -24 507 299 19 19 chr21 14075803 14075957 -30831613 + MER5A DNA MER1_type 35 188 -1 367 77 19 0 chr21 14075980 14076028 -30831542 - THE1B LTR MaLR 0 364 316 2075 122 6 6 chr21 14076028 14076348 -30831222 + THE1B LTR MaLR 1 320 -44 2299 130 6 6 chr21 14076348 14076702 -30830868 - THE1B LTR MaLR 0 364 11 22 0 0 0 chr21 14076702 14076724 -30830846 + AT_rich Low_complexity Low_complexity 1 22 0 3050 117 61 23 chr21 14077034 14077562 -30830008 - MER4B LTR ERV1 0 610 63 316 271 62 57 chr21 14077794 14077971 -30829599 + MLT1J LTR MaLR 3 180 -331 1425 239 119 13 chr21 14078495 14079017 -30828553 - L1MC4 LINE L1 -136 7906 7330 4254 142 19 4 chr21 14079017 14079721 -30827849 + MER50 LTR ERV1 1 714 -20 476 194 124 0 chr21 14079722 14079851 -30827719 - L1MC4a LINE L1 -558 7250 7106 746 279 57 12 chr21 14081519 14081763 -30825807 - MIR SINE MIR 0 262 8 437 215 0 11 chr21 14082361 14082454 -30825116 + MIR SINE MIR 171 262 0 653 309 53 4 chr21 14082637 14082921 -30824649 + L2 LINE L2 2414 2828 -486 422 296 124 45 chr21 14082987 14083318 -30824252 - L1M4 LINE L1 -1380 4766 4410 23 54 0 0 chr21 14084688 14084725 -30822845 + AT_rich Low_complexity Low_complexity 1 37 0 329 368 31 39 chr21 14084886 14085144 -30822426 + L2 LINE L2 2813 3068 -204 542 196 244 6 chr21 14088380 14088548 -30819022 - MER3 DNA MER1_type 0 209 2 343 233 244 16 chr21 14088816 14089009 -30818561 - L2 LINE L2 -4 3309 3073 228 291 238 10 chr21 14089117 14089323 -30818247 - L2 LINE L2 -216 3097 2845 516 239 33 131 chr21 14091046 14091351 -30816219 - MER102b DNA MER1_type -23 318 44 4554 203 94 38 chr21 14091415 14092778 -30814792 - Charlie1a DNA MER1_type -15 1440 2 265 273 83 25 chr21 14093069 14093190 -30814380 - LTR67 LTR ERVL -57 500 373 23 0 0 0 chr21 14093484 14093507 -30814063 + GC_rich Low_complexity Low_complexity 1 23 0 225 337 34 11 chr21 14093518 14093607 -30813963 - LTR67 LTR ERVL -363 194 104 1106 177 29 19 chr21 14094387 14094596 -30812974 + AluJo SINE Alu 84 294 -18 926 251 23 0 chr21 14096084 14096303 -30811267 - MER58A DNA MER1_type 0 224 1 260 266 71 35 chr21 14096508 14096621 -30810949 - MIR SINE MIR -67 195 79 33 73 0 0 chr21 14097186 14097254 -30810316 + AT_rich Low_complexity Low_complexity 1 68 0 25 31 0 0 chr21 14097490 14097522 -30810048 + AT_rich Low_complexity Low_complexity 1 32 0 320 226 132 9 chr21 14098435 14098541 -30809029 - HERVL68 LTR ERVL -1026 2011 1893 1546 267 44 5 chr21 14098565 14099161 -30808409 - HERVL68 LTR ERVL -1508 4022 3384 10957 239 66 29 chr21 14099209 14101420 -30806150 + L1M2c LINE L1 4 2131 -5036 2337 75 0 40 chr21 14101420 14101741 -30805829 + AluY SINE Alu 1 308 -3 10957 239 66 29 chr21 14101741 14102035 -30805535 + L1M2c LINE L1 2131 2413 -4754 2196 107 3 0 chr21 14102035 14102334 -30805236 + AluSp SINE Alu 1 300 -13 10957 239 66 29 chr21 14102334 14105218 -30802352 + L1M2c LINE L1 2413 5887 -1280 409 296 40 15 chr21 14105229 14105428 -30802142 + L1M4 LINE L1 4417 4620 -1526 204 321 45 36 chr21 14108732 14108844 -30798726 - MIR3 SINE MIR -3 205 93 257 350 60 0 chr21 14112503 14112620 -30794950 + L2 LINE L2 3190 3313 0 327 286 185 38 chr21 14112881 14113227 -30794343 - HAL1 LINE L1 -229 2278 1882 402 339 98 52 chr21 14113276 14113777 -30793793 - HAL1 LINE L1 -1874 633 110 549 272 106 30 chr21 14114649 14115336 -30792234 + L1ME LINE L1 784 1531 -4549 263 307 149 29 chr21 14115411 14115487 -30792083 + L2 LINE L2 1732 1797 -1517 1409 176 54 45 chr21 14115487 14115822 -30791748 + MER44D DNA MER2_type 1 608 -1 263 307 149 29 chr21 14115822 14115986 -30791584 + L2 LINE L2 1797 2001 -1313 216 279 15 15 chr21 14116051 14116119 -30791451 + MER5B DNA MER1_type 111 178 0 355 118 0 0 chr21 14116347 14116398 -30791172 + L2 LINE L2 3263 3313 0 433 271 106 47 chr21 14116682 14116918 -30790652 + MER112 DNA MER1_type 2 251 -9 748 245 149 0 chr21 14118051 14118259 -30789311 + MIR SINE MIR 23 261 -1 27 49 0 0 chr21 14118268 14118309 -30789261 + AT_rich Low_complexity Low_complexity 1 41 0 3163 267 54 20 chr21 14120142 14121333 -30786237 + L1ME LINE L1 2677 3907 -2173 204 130 74 19 chr21 14122113 14122167 -30785403 + (TTAAA)n Simple_repeat Simple_repeat 5 61 0 44 63 0 0 chr21 14122187 14122266 -30785304 + AT_rich Low_complexity Low_complexity 1 79 0 390 218 0 0 chr21 14122433 14122511 -30785059 + MIR SINE MIR 185 262 0 238 224 0 0 chr21 14124148 14124197 -30783373 + T-rich Low_complexity Low_complexity 1 49 0 1627 190 0 28 chr21 14124651 14124972 -30782598 - AluJo SINE Alu 0 312 1 1205 258 81 30 chr21 14125173 14125607 -30781963 - MLT1C LTR MaLR -5 462 7 243 0 0 0 chr21 14126291 14126318 -30781252 + (TG)n Simple_repeat Simple_repeat 2 28 0 438 234 103 0 chr21 14127059 14127166 -30780404 - MLT1I LTR MaLR -219 190 73 3858 141 26 5 chr21 14127235 14127879 -30779691 + L1MB2 LINE L1 5484 6141 -30 341 316 90 13 chr21 14128601 14128756 -30778814 - MIR SINE MIR -32 230 64 192 214 0 0 chr21 14129856 14129912 -30777658 + (TA)n Simple_repeat Simple_repeat 1 56 0 2413 60 0 10 chr21 14130111 14130411 -30777159 + AluY SINE Alu 1 297 -14 279 245 43 21 chr21 14131115 14131209 -30776361 + MER69 DNA AcHobo 2430 2525 -1 333 371 83 39 chr21 14131211 14131645 -30775925 + L2 LINE L2 1487 1939 -1375 1060 139 23 0 chr21 14131648 14131820 -30775750 + THE1A LTR MaLR 1 176 -179 489 123 12 0 chr21 14131815 14131896 -30775674 - THE1A LTR MaLR -120 235 154 * 1396 89 5 0 chr21 14131891 14132082 -30775488 + THE1A LTR MaLR 164 355 0 9977 104 11 80 chr21 14132082 14133772 -30773798 + THE1A-int LTR MaLR 1 1735 0 2413 116 3 3 chr21 14133772 14134127 -30773443 + THE1A LTR MaLR 1 355 0 606 300 95 97 chr21 14134196 14134595 -30772975 + L2 LINE L2 1984 2382 -931 2152 119 0 0 chr21 14134595 14134890 -30772680 + AluSx SINE Alu 2 296 -16 606 300 95 97 chr21 14134890 14135251 -30772319 + L2 LINE L2 2382 2742 -571 1915 148 10 62 chr21 14135251 14135635 -30771935 - THE1B LTR MaLR 0 364 1 606 300 95 97 chr21 14135635 14136189 -30771381 + L2 LINE L2 2742 3286 -27 230 322 11 0 chr21 14136203 14136293 -30771277 + (TA)n Simple_repeat Simple_repeat 2 92 0 294 229 152 57 chr21 14137280 14137385 -30770185 + L2 LINE L2 3199 3313 0 22 35 0 0 chr21 14138381 14138410 -30769160 + AT_rich Low_complexity Low_complexity 1 29 0 251 331 23 0 chr21 14138934 14139064 -30768506 - L1MC/D LINE L1 -1896 5912 5780 292 252 104 74 chr21 14139126 14139261 -30768309 - L1MC/D LINE L1 -484 5686 5548 380 176 0 9 chr21 14142241 14142349 -30765221 + CT-rich Low_complexity Low_complexity 4 110 0 1867 136 4 0 chr21 14142352 14142631 -30764939 - AluSx SINE Alu -3 309 30 21 0 0 0 chr21 14145031 14145052 -30762518 + AT_rich Low_complexity Low_complexity 1 21 0 438 94 0 0 chr21 14145486 14145550 -30762020 + (TG)n Simple_repeat Simple_repeat 2 65 0 192 344 16 0 chr21 14146001 14146062 -30761508 - L2 LINE L2 -4 3268 3207 226 300 83 83 chr21 14146137 14146390 -30761180 - L2 LINE L2 -730 2584 2332 2199 94 0 3 chr21 14146395 14146681 -30760889 - AluSc SINE Alu -24 285 1 1254 117 27 0 chr21 14146917 14147105 -30760465 - L1PA15 LINE L1 -21 6144 5952 385 251 116 51 chr21 14147107 14147481 -30760089 - L1MC/D LINE L1 -770 5376 5215 195 391 93 51 chr21 14149688 14150120 -30757450 + L2 LINE L2 2814 3263 -9 2129 116 3 3 chr21 14150481 14150792 -30756778 + AluY SINE Alu 1 311 0 347 270 33 20 chr21 14151335 14151487 -30756083 - HAL1b LINE L1 -2 1346 1193 214 298 29 67 chr21 14155207 14155311 -30752259 + MER5A DNA MER1_type 61 163 -18 210 390 0 50 chr21 14155657 14155683 -30751887 + L2 LINE L2 3163 3189 -83 1599 165 41 10 chr21 14155683 14155974 -30751596 - AluSq SINE Alu -13 300 1 210 390 0 50 chr21 14155974 14156047 -30751523 + L2 LINE L2 3189 3257 -15 196 302 0 16 chr21 14156258 14156321 -30751249 + MER5B DNA MER1_type 90 151 -27 * 216 293 52 0 chr21 14156271 14156329 -30751241 - MER5B DNA MER1_type -101 77 17 343 344 25 8 chr21 14157858 14157980 -30749590 + L2 LINE L2 2931 3054 -218 218 250 25 38 chr21 14159410 14159490 -30748080 + L2 LINE L2 3156 3234 -79 206 214 80 89 chr21 14159513 14159625 -30747945 - L2 LINE L2 -962 2352 2242 302 341 33 0 chr21 14159653 14159744 -30747826 - L2 LINE L2 -2127 1187 1094 240 336 16 0 chr21 14160345 14160467 -30747103 + MIR SINE MIR 16 139 -69 339 310 171 56 chr21 14162030 14162246 -30745324 + MIR SINE MIR 16 256 -6 423 224 172 49 chr21 14162454 14162820 -30744750 - L1ME4a LINE L1 -81 6040 5630 295 261 0 0 chr21 14162821 14162890 -30744680 - L1ME LINE L1 -441 5680 5612 345 140 0 0 chr21 14163846 14163903 -30743667 + (TA)n Simple_repeat Simple_repeat 1 57 0 2015 144 3 0 chr21 14163903 14164201 -30743369 - AluSx SINE Alu -8 304 6 23 0 0 0 chr21 14165840 14165863 -30741707 + AT_rich Low_complexity Low_complexity 1 23 0 256 328 35 58 chr21 14167061 14167235 -30740335 + MER91A DNA MER1_type 1 170 -26 275 211 18 0 chr21 14167298 14167355 -30740215 + MER91A DNA MER1_type 139 196 0 26 30 0 0 chr21 14168047 14168080 -30739490 + AT_rich Low_complexity Low_complexity 1 33 0 546 176 17 59 chr21 14168566 14168685 -30738885 + MER81 DNA DNA 1 114 0 945 291 107 21 chr21 14169070 14169245 -30738325 - HAL1 LINE L1 -135 2372 2213 222 37 0 0 chr21 14169245 14169272 -30738298 + (CA)n Simple_repeat Simple_repeat 1 27 0 945 291 107 21 chr21 14169272 14169711 -30737859 - HAL1 LINE L1 -294 2213 1705 542 270 158 5 chr21 14170085 14170281 -30737289 + MIR SINE MIR 37 262 0 249 305 0 0 chr21 14171017 14171122 -30736448 + (CA)n Simple_repeat Simple_repeat 2 106 0 21 0 0 0 chr21 14171366 14171387 -30736183 + AT_rich Low_complexity Low_complexity 1 21 0 396 351 82 21 chr21 14171389 14171717 -30735853 - L1 LINE L1 -2372 3774 3427 2113 104 0 0 chr21 14171881 14172188 -30735382 - AluSg SINE Alu 0 307 1 784 273 94 20 chr21 14173458 14173799 -30733771 - L1ME3A LINE L1 -60 6110 5745 258 343 87 17 chr21 14173813 14173985 -30733585 - L2 LINE L2 -30 3283 3100 2636 36 0 0 chr21 14174209 14174515 -30733055 - AluY SINE Alu -5 306 1 403 330 201 0 chr21 14174788 14174982 -30732588 + MIR SINE MIR 12 244 -18 874 290 110 75 chr21 14175752 14176932 -30730638 - L1ME3A LINE L1 -1304 4842 3604 2376 65 0 10 chr21 14176932 14177239 -30730331 - AluY SINE Alu -7 304 1 874 290 110 75 chr21 14177239 14177455 -30730115 - L1ME3A LINE L1 -2542 3604 3397 252 59 0 0 chr21 14177703 14177737 -30729833 + (TA)n Simple_repeat Simple_repeat 2 35 0 1095 123 12 0 chr21 14177737 14177899 -30729671 - AluSg/x SINE Alu -15 297 134 2100 117 0 7 chr21 14177899 14178199 -30729371 - AluSx SINE Alu -14 298 1 284 296 49 14 chr21 14178270 14178412 -30729158 - L1ME3A LINE L1 -3245 2901 2755 215 111 0 22 chr21 14178675 14178720 -30728850 + (TA)n Simple_repeat Simple_repeat 2 45 0 180 0 0 0 chr21 14178720 14178740 -30728830 + (GA)n Simple_repeat Simple_repeat 2 21 0 1405 151 22 4 chr21 14179959 14180191 -30727379 + MER46A DNA MER2_type 1 236 0 22 35 0 0 chr21 14180734 14180763 -30726807 + AT_rich Low_complexity Low_complexity 1 29 0 2028 91 4 7 chr21 14181500 14181776 -30725794 + AluSg SINE Alu 1 275 -35 198 0 0 0 chr21 14181776 14181798 -30725772 + (T)n Simple_repeat Simple_repeat 1 22 0 870 209 47 19 chr21 14182463 14182674 -30724896 - MER20 DNA MER1_type -2 217 1 212 307 9 88 chr21 14183152 14183266 -30724304 + MIR SINE MIR 158 262 0 225 300 0 0 chr21 14183939 14183999 -30723571 + (TA)n Simple_repeat Simple_repeat 2 61 0 843 266 101 8 chr21 14184440 14184677 -30722893 - MIR SINE MIR -3 259 1 875 319 66 14 chr21 14185280 14185782 -30721788 + L1M4 LINE L1 4146 4673 -1473 919 215 105 0 chr21 14186352 14186552 -30721018 + MER58A DNA MER1_type 1 221 -3 1529 197 7 17 chr21 14186709 14187009 -30720561 + AluJo SINE Alu 3 299 -13 354 213 0 0 chr21 14187995 14188075 -30719495 - L1MC2 LINE L1 -11 6333 6254 21 57 0 0 chr21 14188328 14188363 -30719207 + AT_rich Low_complexity Low_complexity 1 35 0 592 209 134 21 chr21 14188644 14188831 -30718739 - MER3 DNA MER1_type 0 209 2 282 301 43 11 chr21 14189179 14189272 -30718298 - MIR SINE MIR -69 139 44 1179 82 0 6 chr21 14189596 14189754 -30717816 + AluSg/x SINE Alu 145 301 -11 234 0 0 0 chr21 14189759 14189785 -30717785 + (T)n Simple_repeat Simple_repeat 1 26 0 21 0 0 0 chr21 14190510 14190531 -30717039 + AT_rich Low_complexity Low_complexity 1 21 0 21 36 0 0 chr21 14190644 14190672 -30716898 + AT_rich Low_complexity Low_complexity 1 28 0 28 0 0 0 chr21 14190720 14190748 -30716822 + AT_rich Low_complexity Low_complexity 1 28 0 1444 196 0 35 chr21 14190849 14191165 -30716405 - AluJb SINE Alu -7 305 1 2024 98 31 0 chr21 14191250 14191537 -30716033 - AluSp SINE Alu -17 296 1 1870 129 0 50 chr21 14192634 14192936 -30714634 + AluSc SINE Alu 6 292 -17 217 333 77 13 chr21 14193202 14193280 -30714290 - L2 LINE L2 -51 3221 3139 182 291 115 34 chr21 14193973 14194121 -30713449 - MIR SINE MIR -15 247 88 1998 124 49 35 chr21 14194124 14194494 -30713076 - THE1C LTR MaLR 0 375 1 992 245 37 0 chr21 14194747 14194963 -30712607 + MER58A DNA MER1_type 1 224 0 203 309 111 0 chr21 14194964 14195045 -30712525 + L2 LINE L2 3190 3279 -34 25 51 0 0 chr21 14195815 14195854 -30711716 + AT_rich Low_complexity Low_complexity 1 39 0 231 188 0 0 chr21 14197056 14197104 -30710466 + (TA)n Simple_repeat Simple_repeat 2 49 0 11812 167 31 16 chr21 14198106 14199611 -30707959 - L1PA11 LINE L1 0 6174 4693 189 74 0 0 chr21 14199611 14199638 -30707932 + (TTTTG)n Simple_repeat Simple_repeat 4 30 0 11812 167 31 16 chr21 14199638 14201052 -30706518 - L1PA11 LINE L1 -1481 4693 3209 2232 74 0 44 chr21 14201052 14201350 -30706220 + AluY SINE Alu 12 296 -15 11812 167 31 16 chr21 14201350 14201615 -30705955 - L1PA11 LINE L1 -2965 3209 2949 640 230 84 28 chr21 14201911 14202089 -30705481 + MER5A DNA MER1_type 2 189 0 22 0 0 0 chr21 14202211 14202233 -30705337 + AT_rich Low_complexity Low_complexity 1 22 0 1651 171 41 69 chr21 14202487 14202879 -30704691 - MLT1B LTR MaLR 0 390 10 1578 210 0 0 chr21 14204065 14204360 -30703210 - AluJb SINE Alu -17 295 1 1048 259 13 13 chr21 14204715 14204954 -30702616 + MIR SINE MIR 13 251 -11 266 268 116 36 chr21 14205554 14205666 -30701904 + L2 LINE L2 3124 3244 -28 691 216 27 0 chr21 14205732 14205880 -30701690 - MER3 DNA MER1_type -57 152 1 686 303 85 4 chr21 14206125 14206574 -30700996 - LTR50 LTR ERVL -148 647 1 219 272 148 25 chr21 14206799 14206880 -30700690 - L2 LINE L2 -1 3312 3222 375 300 132 17 chr21 14207202 14207489 -30700081 - L1MC/D LINE L1 -2185 5623 5304 370 269 67 0 chr21 14208365 14208469 -30699101 - Charlie1 DNA MER1_type -15 2746 2636 236 351 15 8 chr21 14208888 14209019 -30698551 - L1MEc LINE L1 -6209 187 56 429 20 0 0 chr21 14209105 14209155 -30698415 + (CA)n Simple_repeat Simple_repeat 1 50 0 297 0 0 0 chr21 14209644 14209677 -30697893 + (A)n Simple_repeat Simple_repeat 1 33 0 888 262 134 30 chr21 14209677 14210169 -30697401 + L1ME3 LINE L1 5352 5894 -268 389 293 224 41 chr21 14210387 14210780 -30696790 - L2 LINE L2 -1020 2294 1830 324 286 33 0 chr21 14210955 14211046 -30696524 + MER69 DNA AcHobo 2152 2245 -281 320 361 39 0 chr21 14211397 14211527 -30696043 + L1MEd LINE L1 768 902 -5494 23 33 0 0 chr21 14211559 14211589 -30695981 + AT_rich Low_complexity Low_complexity 1 30 0 21 0 0 0 chr21 14211632 14211653 -30695917 + AT_rich Low_complexity Low_complexity 1 21 0 24 0 0 0 chr21 14212514 14212538 -30695032 + AT_rich Low_complexity Low_complexity 1 24 0 281 190 0 35 chr21 14213079 14213137 -30694433 + U6 snRNA snRNA 52 107 0 14363 160 50 29 chr21 14213450 14216902 -30690668 + L1MA2 LINE L1 342 3721 -4002 1407 121 19 0 chr21 14216902 14217117 -30690453 - L1PA14 LINE L1 -9 6152 5934 14363 160 50 29 chr21 14217117 14220535 -30687035 + L1MA2 LINE L1 3721 7723 0 302 325 53 0 chr21 14220801 14220915 -30686655 + L1MEd LINE L1 1166 1285 -5124 286 281 92 73 chr21 14221015 14221110 -30686460 + L1MEd LINE L1 1425 1517 -5070 2589 42 0 3 chr21 14221110 14221416 -30686154 + AluY SINE Alu 7 311 0 286 281 92 73 chr21 14221416 14221883 -30685687 + L1MEd LINE L1 1517 1998 -4589 1540 267 39 15 chr21 14221900 14222312 -30685258 + L1M4 LINE L1 16 437 -6105 1943 173 18 23 chr21 14222320 14222708 -30684862 + MER50 LTR ERV1 349 734 0 327 241 24 0 chr21 14222768 14222851 -30684719 + L1M4 LINE L1 475 559 -5983 355 272 32 16 chr21 14222985 14223110 -30684460 + L1M4 LINE L1 562 688 -5854 334 336 55 66 chr21 14223259 14223625 -30683945 - L1ME LINE L1 -5699 371 10 697 222 0 0 chr21 14223791 14223926 -30683644 + FLAM_C SINE Alu 3 137 -6 1609 153 0 58 chr21 14224520 14224833 -30682737 - AluJb SINE Alu -17 295 1 330 309 47 0 chr21 14224930 14225079 -30682491 - L1MEc LINE L1 -4710 1686 1531 743 172 133 7 chr21 14225094 14225245 -30682325 - AluSc SINE Alu -15 294 125 2927 213 46 26 chr21 14225332 14225716 -30681854 - MER44D DNA MER2_type -1882 605 327 2234 53 40 30 chr21 14225716 14226016 -30681554 - AluY SINE Alu -8 303 1 2927 213 46 26 chr21 14226016 14226349 -30681221 - MER44D DNA MER2_type -2160 327 2 717 144 25 0 chr21 14226474 14226592 -30680978 + MER65B LTR ERV1 7 127 -404 3960 187 84 32 chr21 14226656 14227726 -30679844 + MER4-int LTR ERV1 1369 2494 -2377 1109 206 62 87 chr21 14227802 14228574 -30678996 + MER4-int LTR ERV1 1516 2435 -4323 2173 121 13 0 chr21 14228577 14228883 -30678687 - AluSq SINE Alu -3 310 1 17894 76 8 3 chr21 14229013 14232263 -30675307 - L1PA6 LINE L1 -1 6153 2896 207 0 0 0 chr21 14232327 14232350 -30675220 + (TTTTTG)n Simple_repeat Simple_repeat 2 24 0 32134 37 1 1 chr21 14232352 14238506 -30669064 - L1PA3 LINE L1 -3 6152 1 7814 81 0 2 chr21 14238509 14239580 -30667990 - L1PA6 LINE L1 -3219 2927 1859 803 202 52 91 chr21 14239676 14240436 -30667134 + MER4-int LTR ERV1 3730 4481 -1850 530 157 43 71 chr21 14240436 14240576 -30666994 + MER65A LTR ERV1 310 445 0 396 247 19 78 chr21 14240636 14240790 -30666780 - MLT1I LTR MaLR -200 209 65 1377 248 70 13 chr21 14240931 14241406 -30666164 + MLT1D LTR MaLR 1 502 -3 24 77 0 0 chr21 14242175 14242227 -30665343 + AT_rich Low_complexity Low_complexity 1 52 0 2067 110 138 46 chr21 14242285 14242313 -30665257 + MSTA LTR MaLR 1 25 -403 2165 114 47 42 chr21 14242313 14242674 -30664896 - THE1B LTR MaLR 0 364 2 11400 109 4 0 chr21 14242675 14244249 -30663321 - THE1B-int LTR MaLR 0 1580 1 2118 130 54 23 chr21 14244249 14244602 -30662968 - THE1B LTR MaLR 0 364 1 2067 110 138 46 chr21 14244602 14244962 -30662608 + MSTA LTR MaLR 24 428 0 601 282 32 62 chr21 14245611 14245951 -30661619 - LTR41 LTR ERVL -7 766 437 616 228 28 17 chr21 14246114 14246294 -30661276 - LTR41 LTR ERVL -586 187 6 21 0 0 0 chr21 14247936 14247957 -30659613 + AT_rich Low_complexity Low_complexity 1 21 0 1923 159 3 3 chr21 14248828 14249124 -30658446 - AluSx SINE Alu -16 296 1 3566 237 70 35 chr21 14249256 14250379 -30657191 - L1MDa LINE L1 -5347 1193 32 3079 71 10 2 chr21 14250644 14251254 -30656316 + PABL_A LTR ERV1 1 660 0 2328 78 0 26 chr21 14251561 14251870 -30655700 - AluSc SINE Alu -8 301 1 2244 122 0 0 chr21 14251923 14252227 -30655343 + AluSx SINE Alu 1 304 -8 195 323 16 0 chr21 14252991 14253053 -30654517 + L2 LINE L2 3251 3313 0 686 278 143 24 chr21 14253695 14254065 -30653505 - MLT1J2 LTR MaLR -34 416 3 438 294 8 0 chr21 14254836 14254962 -30652608 + MIR SINE MIR 75 201 -61 21 0 0 0 chr21 14255030 14255051 -30652519 + AT_rich Low_complexity Low_complexity 1 21 0 753 240 35 30 chr21 14255107 14255307 -30652263 - L1ME1 LINE L1 -63 6172 5972 724 231 64 6 chr21 14255334 14255664 -30651906 - L1ME1 LINE L1 -678 5555 5212 502 292 7 0 chr21 14255665 14255809 -30651761 - L1ME1 LINE L1 -1127 5088 4944 2035 154 46 31 chr21 14255812 14256357 -30651213 - MLT2A2 LTR ERVL 0 554 1 810 269 91 27 chr21 14256357 14256799 -30650771 - L1ME1 LINE L1 -1270 4945 4476 950 237 30 39 chr21 14256799 14256866 -30650704 - L1ME1 LINE L1 -4488 1908 1842 2901 176 21 5 chr21 14256866 14257239 -30650331 - L1MB2 LINE L1 -3 6168 5778 1056 137 0 0 chr21 14257239 14257468 -30650102 + (TA)n Simple_repeat Simple_repeat 1 229 0 2901 176 21 5 chr21 14257468 14257648 -30649922 - L1MB2 LINE L1 -393 5778 5602 950 237 30 39 chr21 14257648 14257917 -30649653 - L1ME1 LINE L1 -4554 1842 1575 390 267 11 0 chr21 14257955 14258045 -30649525 - MLT1F LTR MaLR -447 95 5 468 288 61 82 chr21 14258055 14258447 -30649123 - MLT1F-int LTR MaLR -6 1365 982 327 287 88 7 chr21 14258921 14259057 -30648513 - MLT1F-int LTR MaLR -760 611 465 6539 211 49 8 chr21 14259864 14261381 -30646189 - Cheshire DNA MER1_type 0 2420 841 279 170 57 0 chr21 14261386 14261439 -30646131 - Cheshire DNA MER1_type -2321 99 44 5236 124 30 6 chr21 14262333 14263266 -30644304 - L1PB1 LINE L1 -3 6148 5232 34 24 0 0 chr21 14263340 14263381 -30644189 + AT_rich Low_complexity Low_complexity 1 41 0 288 289 208 6 chr21 14263421 14263580 -30643990 + MIR SINE MIR 41 231 -31 267 209 15 0 chr21 14265140 14265207 -30642363 + (TTTG)n Simple_repeat Simple_repeat 2 69 0 1484 215 48 14 chr21 14266955 14267428 -30640142 - L1MC/D LINE L1 -718 5641 5154 2707 107 0 3 chr21 14267442 14267833 -30639737 - L1PA13 LINE L1 -1 6162 5773 18856 91 8 14 chr21 14267838 14270609 -30636961 - L1PA13 LINE L1 -914 5232 2479 2211 146 4 16 chr21 14270597 14271151 -30636419 - L1P4 LINE L1 -678 6923 6373 * 4443 181 11 10 chr21 14271149 14272031 -30635539 - L1P4 LINE L1 -3595 3989 3107 3472 173 16 9 chr21 14272039 14272618 -30634952 - L1P4 LINE L1 -6986 595 13 1673 235 61 27 chr21 14272618 14273086 -30634484 - L1MC/D LINE L1 -1003 5143 4651 1874 170 10 0 chr21 14273086 14273380 -30634190 - AluSx SINE Alu -15 297 1 1673 235 61 27 chr21 14273380 14273472 -30634098 - L1MC/D LINE L1 -1495 4651 4564 3908 208 38 14 chr21 14273493 14273878 -30633692 - L1MB7 LINE L1 0 6184 5810 3011 88 44 14 chr21 14273878 14274266 -30633304 + MLT2A1 LTR ERVL 1 405 -39 180 0 0 0 chr21 14274266 14274286 -30633284 + (TA)n Simple_repeat Simple_repeat 2 21 0 3011 88 44 14 chr21 14274286 14274328 -30633242 + MLT2A1 LTR ERVL 405 444 0 3908 208 38 14 chr21 14274328 14275561 -30632009 - L1MB7 LINE L1 -374 5810 4528 322 221 0 13 chr21 14275548 14275625 -30631945 + L1ME1 LINE L1 4841 4916 -1230 * 821 250 144 9 chr21 14275626 14275974 -30631596 + L1ME1 LINE L1 4996 5390 -756 568 226 99 63 chr21 14276035 14276256 -30631314 - MER34B LTR ERV1 -312 253 25 1264 234 75 18 chr21 14276264 14276653 -30630917 + L1ME1 LINE L1 5691 6101 -65 285 51 0 0 chr21 14276768 14276807 -30630763 + (TC)n Simple_repeat Simple_repeat 2 40 0 321 26 0 0 chr21 14277125 14277163 -30630407 + (CA)n Simple_repeat Simple_repeat 2 39 0 378 0 0 0 chr21 14277165 14277207 -30630363 + (TA)n Simple_repeat Simple_repeat 2 43 0 261 238 0 0 chr21 14277976 14278039 -30629531 + (ATG)n Simple_repeat Simple_repeat 2 64 0 23 0 0 0 chr21 14278362 14278385 -30629185 + AT_rich Low_complexity Low_complexity 1 23 0 2601 39 0 3 chr21 14278621 14278931 -30628639 - AluY SINE Alu -2 309 1 366 173 82 36 chr21 14279662 14279772 -30627798 - L1ME4a LINE L1 -11 6110 5996 2477 76 0 3 chr21 14280625 14280928 -30626642 + AluSq SINE Alu 1 302 -11 1148 102 28 0 chr21 14281211 14281387 -30626183 - L1MA3 LINE L1 0 6305 6125 268 261 239 0 chr21 14281577 14281669 -30625901 - MER5B DNA MER1_type -63 115 2 352 277 26 155 chr21 14283328 14283714 -30623856 - L2 LINE L2 -33 3280 2945 1667 225 59 53 chr21 14284100 14284612 -30622958 - MLT1E2 LTR MaLR 0 626 112 2410 206 13 11 chr21 14284622 14285092 -30622478 + MER21B LTR ERV1 1 471 -392 24 32 0 0 chr21 14285097 14285128 -30622442 + AT_rich Low_complexity Low_complexity 1 31 0 1342 194 96 50 chr21 14285153 14285530 -30622040 + MER21B LTR ERV1 454 847 -16 254 142 178 60 chr21 14285553 14285650 -30621920 - MLT1E1 LTR MaLR -493 131 1 270 0 0 0 chr21 14285686 14285716 -30621854 + (T)n Simple_repeat Simple_repeat 1 30 0 22 0 0 0 chr21 14286430 14286452 -30621118 + AT_rich Low_complexity Low_complexity 1 22 0 189 0 0 0 chr21 14287688 14287709 -30619861 + (CAT)n Simple_repeat Simple_repeat 2 22 0 204 308 77 48 chr21 14287877 14287981 -30619589 - L2 LINE L2 -2919 395 289 2799 81 74 12 chr21 14288564 14288939 -30618631 + MLT2A1 LTR ERVL 1 406 -38 520 26 0 26 chr21 14288939 14289015 -30618555 + (TCTA)n Simple_repeat Simple_repeat 1 74 0 2799 81 74 12 chr21 14289015 14289057 -30618513 + MLT2A1 LTR ERVL 406 444 0 21 36 0 0 chr21 14289912 14289940 -30617630 + AT_rich Low_complexity Low_complexity 1 28 0 1971 76 0 0 chr21 14290675 14290926 -30616644 - AluY SINE Alu -11 300 50 27 29 0 0 chr21 14291176 14291210 -30616360 + AT_rich Low_complexity Low_complexity 1 34 0 242 241 46 35 chr21 14291250 14291337 -30616233 - MIR3 SINE MIR -1 207 120 2104 97 10 30 chr21 14292320 14292662 -30614908 + AluSg SINE Alu 1 336 0 566 253 18 62 chr21 14294501 14294726 -30612844 - MER58C DNA MER1_type 0 215 1 3021 99 2 20 chr21 14297389 14297845 -30609725 - LTR7 LTR ERV1 -2 448 1 2275 113 51 3 chr21 14297845 14298217 -30609353 - HERVH LTR ERV1 0 7713 7324 1492 111 0 22 chr21 14298217 14298442 -30609128 - HERVH LTR ERV1 -1894 5819 5600 3090 131 2 2 chr21 14298443 14299057 -30608513 - HERVH LTR ERV1 -2564 5149 4488 5715 105 9 3 chr21 14299059 14299908 -30607662 - HERVH LTR ERV1 -3720 3993 3140 * 15303 96 9 24 chr21 14299894 14302681 -30604889 - HERVH LTR ERV1 -4721 2992 1 2998 101 2 22 chr21 14302683 14303140 -30604430 - LTR7 LTR ERV1 -2 448 1 197 389 19 9 chr21 14303418 14303526 -30604044 + MIR3 SINE MIR 13 121 -87 783 207 50 6 chr21 14304747 14304926 -30602644 - L1MB5 LINE L1 -8 6166 5980 21 0 0 0 chr21 14305315 14305336 -30602234 + AT_rich Low_complexity Low_complexity 1 21 0 245 106 0 21 chr21 14305523 14305570 -30602000 + (TTTTA)n Simple_repeat Simple_repeat 2 47 0 275 283 57 45 chr21 14305612 14305832 -30601738 - MIR SINE MIR -55 207 20 326 295 74 8 chr21 14305840 14305962 -30601608 + MIR3 SINE MIR 66 195 -13 22 35 0 0 chr21 14308268 14308297 -30599273 + AT_rich Low_complexity Low_complexity 1 29 0 26 0 0 0 chr21 14308503 14308529 -30599041 + AT_rich Low_complexity Low_complexity 1 26 0 280 274 54 2 chr21 14309161 14309270 -30598300 + MIR SINE MIR 33 146 -62 284 92 0 0 chr21 14309442 14309484 -30598086 - MLT2B2 LTR ERVL 0 515 373 313 250 23 8 chr21 14309510 14309642 -30597928 + (TATAA)n Simple_repeat Simple_repeat 5 138 0 272 123 39 50 chr21 14309642 14309821 -30597749 + (TA)n Simple_repeat Simple_repeat 1 177 0 1465 247 52 46 chr21 14309881 14310362 -30597208 - MLT2B1 LTR ERVL -35 485 2 2350 93 0 10 chr21 14311035 14311347 -30596223 - AluSp SINE Alu -4 309 1 1414 201 105 85 chr21 14311619 14312326 -30595244 + MER69 DNA AcHobo 1466 2186 -340 390 195 42 100 chr21 14312320 14312447 -30595123 + MER69 DNA AcHobo 2337 2451 -75 * 2636 48 0 3 chr21 14312447 14312759 -30594811 - AluY SINE Alu 0 311 1 390 195 42 100 chr21 14312759 14312821 -30594749 + MER69 DNA AcHobo 2451 2515 -11 194 318 0 68 chr21 14312912 14313000 -30594570 + L2 LINE L2 3191 3272 0 181 222 0 93 chr21 14314276 14314330 -30593240 - L2 LINE L2 0 3313 3265 266 196 20 0 chr21 14314487 14314538 -30593032 - MIR3 SINE MIR -6 202 151 444 204 29 109 chr21 14314601 14314690 -30592880 - L2 LINE L2 0 3313 3237 2549 53 0 0 chr21 14314690 14314993 -30592577 + AluY SINE Alu 1 303 -8 444 204 29 109 chr21 14314993 14315040 -30592530 - L2 LINE L2 -76 3237 3188 340 298 56 23 chr21 14316307 14316522 -30591048 - MER112 DNA MER1_type -38 222 1 23 0 0 0 chr21 14316785 14316808 -30590762 + AT_rich Low_complexity Low_complexity 1 23 0 195 384 14 0 chr21 14318661 14318734 -30588836 + L2 LINE L2 3197 3270 -2 2279 115 11 11 chr21 14319110 14319467 -30588103 + L1PA10 LINE L1 5812 6168 0 338 277 77 41 chr21 14319988 14320183 -30587387 + L1MDa LINE L1 1804 2005 -4535 2095 110 3 3 chr21 14320405 14320696 -30586874 + AluSq SINE Alu 1 291 -22 707 310 66 17 chr21 14321665 14321952 -30585618 - MLT1I LTR MaLR -49 360 60 3094 156 66 9 chr21 14322147 14322522 -30585048 - MER6A DNA MER2_type -260 605 184 204 40 0 0 chr21 14322522 14322547 -30585023 + (CA)n Simple_repeat Simple_repeat 2 26 0 3094 156 66 9 chr21 14322547 14322743 -30584827 - MER6A DNA MER2_type -681 184 1 2609 43 0 0 chr21 14322789 14323093 -30584477 - AluY SINE Alu -7 304 1 26 74 0 0 chr21 14324316 14324370 -30583200 + AT_rich Low_complexity Low_complexity 1 54 0 651 228 20 13 chr21 14324413 14324562 -30583008 + MER58B DNA MER1_type 191 340 -1 420 318 40 0 chr21 14324565 14324741 -30582829 + MIR SINE MIR 77 259 -3 237 33 0 0 chr21 14325508 14325538 -30582032 + (CA)n Simple_repeat Simple_repeat 1 30 0 359 277 77 51 chr21 14325716 14325990 -30581580 + L1ME LINE L1 5542 5822 -299 261 0 0 0 chr21 14326094 14326123 -30581447 + (CA)n Simple_repeat Simple_repeat 2 30 0 496 164 40 0 chr21 14326903 14327134 -30580436 + (TA)n Simple_repeat Simple_repeat 1 240 0 300 256 48 40 chr21 14327248 14327373 -30580197 - L1ME LINE L1 -685 5436 5311 789 274 14 46 chr21 14327377 14327596 -30579974 + MER58A DNA MER1_type 2 213 -11 417 291 60 20 chr21 14328443 14328594 -30578976 + MLT1I LTR MaLR 253 409 0 432 0 0 0 chr21 14329604 14329652 -30577918 + (TG)n Simple_repeat Simple_repeat 2 49 0 238 328 88 24 chr21 14330073 14330198 -30577372 + MLT1I LTR MaLR 232 364 -45 2217 120 0 0 chr21 14330464 14330764 -30576806 - AluSq SINE Alu -13 300 1 1575 172 11 11 chr21 14332153 14332420 -30575150 + Tigger7 DNA MER2_type 1 267 -466 528 216 0 0 chr21 14332419 14332516 -30575054 + Tigger7 DNA MER2_type 2491 2587 0 * 9238 35 3 0 chr21 14332561 14334453 -30573117 - L1PA4 LINE L1 0 6155 4259 21 57 0 0 chr21 14335089 14335124 -30572446 + AT_rich Low_complexity Low_complexity 1 35 0 525 268 68 54 chr21 14335656 14335861 -30571709 - MIR SINE MIR -9 253 46 201 282 169 42 chr21 14335869 14336011 -30571559 + MIR SINE MIR 99 258 -4 202 351 14 74 chr21 14336074 14336222 -30571348 + L2 LINE L2 3134 3272 0 275 276 40 0 chr21 14336260 14336336 -30571234 + L1ME LINE L1 5566 5644 -477 794 150 52 40 chr21 14336508 14336681 -30570889 + L1PA14 LINE L1 5985 6159 -2 1749 191 8 40 chr21 14337216 14337435 -30570135 - MLT1A1 LTR MaLR 0 365 161 1939 123 0 0 chr21 14337435 14337704 -30569866 - AluSc SINE Alu -1 308 40 1749 191 8 40 chr21 14337704 14337861 -30569709 - MLT1A1 LTR MaLR -204 161 1 2330 102 0 0 chr21 14341847 14342150 -30565420 + AluSx SINE Alu 1 303 -9 267 143 0 0 chr21 14343277 14343319 -30564251 - MLT1D LTR MaLR 0 505 464 2403 62 0 3 chr21 14344109 14344413 -30563157 - AluY SINE Alu -8 303 1 2417 57 0 0 chr21 14344880 14345179 -30562391 + AluY SINE Alu 1 299 -12 821 239 229 76 chr21 14345600 14345767 -30561803 + MLT1H LTR MaLR 1 141 -408 1752 166 0 11 chr21 14345767 14346050 -30561520 + AluJo SINE Alu 10 289 -23 821 239 229 76 chr21 14346050 14346358 -30561212 + MLT1H LTR MaLR 141 549 0 345 284 101 97 chr21 14347338 14347616 -30559954 - MLT1H LTR MaLR -33 516 238 740 184 114 13 chr21 14348465 14348623 -30558947 + FAM SINE Alu 1 174 -1 1524 194 32 0 chr21 14350357 14350640 -30556930 + AluJb SINE Alu 1 292 -20 244 333 18 26 chr21 14350817 14350931 -30556639 - MLT1K LTR MaLR -157 431 319 21 0 0 0 chr21 14352653 14352674 -30554896 + AT_rich Low_complexity Low_complexity 1 21 0 273 292 48 30 chr21 14352704 14352872 -30554698 - L1ME LINE L1 -412 5709 5539 188 360 81 9 chr21 14352989 14353100 -30554470 + L2 LINE L2 3146 3264 -8 431 242 10 0 chr21 14353246 14353345 -30554225 - U6 snRNA snRNA -6 101 2 28 29 0 0 chr21 14353510 14353545 -30554025 + AT_rich Low_complexity Low_complexity 1 35 0 360 296 105 41 chr21 14353906 14354268 -30553302 - L1ME LINE L1 -1305 4841 4457 1572 153 56 17 chr21 14354353 14354521 -30553049 - AluSx SINE Alu -13 299 114 198 0 0 0 chr21 14354521 14354543 -30553027 + (TTTA)n Simple_repeat Simple_repeat 2 23 0 1572 153 56 17 chr21 14354543 14354662 -30552908 - AluSx SINE Alu -198 114 1 1725 175 17 0 chr21 14354665 14354957 -30552613 - AluJb SINE Alu -15 297 1 513 242 102 94 chr21 14355637 14356021 -30551549 - HAL1 LINE L1 -2120 387 1 243 329 72 20 chr21 14356821 14356973 -30550597 + MLT1L LTR MaLR 300 459 -156 242 274 18 88 chr21 14356962 14357022 -30550548 + MLT1K LTR MaLR 450 500 -88 * 2430 117 11 16 chr21 14357022 14357399 -30550171 - THE1C LTR MaLR 0 375 1 242 274 18 88 chr21 14357399 14357451 -30550119 + MLT1K LTR MaLR 500 554 -34 972 259 46 108 chr21 14358659 14359250 -30548320 + MER21B LTR ERV1 141 694 -169 181 254 206 0 chr21 14359262 14359325 -30548245 - MIR SINE MIR -53 209 134 227 269 87 29 chr21 14359693 14359797 -30547773 + MIR SINE MIR 96 205 -57 375 339 119 13 chr21 14360137 14360364 -30547206 + LTR16B LTR ERVL 1 251 -213 25 65 0 0 chr21 14361186 14361232 -30546338 + AT_rich Low_complexity Low_complexity 1 46 0 1452 218 20 83 chr21 14361386 14361933 -30545637 - MLT2B2 LTR ERVL -8 546 29 186 118 0 0 chr21 14363077 14363111 -30544459 + (TTTTTG)n Simple_repeat Simple_repeat 3 36 0 180 273 26 52 chr21 14363680 14363757 -30543813 + MIR3 SINE MIR 8 82 -126 195 370 10 10 chr21 14363868 14363968 -30543602 + L2 LINE L2 3204 3303 -10 213 308 202 10 chr21 14363980 14364084 -30543486 + MIR3 SINE MIR 71 194 -14 2496 40 0 3 chr21 14364086 14364382 -30543188 + AluY SINE Alu 1 295 -16 593 210 17 0 chr21 14364574 14364693 -30542877 - MLT1A1 LTR MaLR -10 355 235 1001 192 92 19 chr21 14364967 14365208 -30542362 - MLT1A1 LTR MaLR -104 261 1 507 286 11 17 chr21 14365290 14365468 -30542102 - L1MC5 LINE L1 -72 7889 7713 258 226 142 13 chr21 14367208 14367363 -30540207 + L1ME LINE L1 5574 5748 -373 2019 138 10 0 chr21 14367568 14368063 -30539507 + L1MA1 LINE L1 5001 5500 -743 5359 87 29 33 chr21 14368870 14369710 -30537860 + L1MA1 LINE L1 5467 6302 0 1040 17 0 0 chr21 14370601 14370720 -30536850 - L1PA3 LINE L1 0 6155 6037 313 221 29 77 chr21 14370752 14370856 -30536714 + L3b LINE CR1 1260 1358 -225 1398 266 59 46 chr21 14371576 14372019 -30535551 - MLT1J LTR MaLR -4 507 56 1696 243 108 0 chr21 14372019 14372475 -30535095 + MLT1D LTR MaLR 1 505 0 1398 266 59 46 chr21 14372475 14372508 -30535062 - MLT1J LTR MaLR -455 56 25 2416 90 0 0 chr21 14372530 14372860 -30534710 - AluSg SINE Alu 0 330 1 2156 193 21 45 chr21 14373471 14373985 -30533585 + MLT1D LTR MaLR 1 502 -3 1084 74 0 0 chr21 14375305 14375440 -30532130 - AluSg/x SINE Alu -19 293 159 215 322 119 17 chr21 14375518 14375636 -30531934 - MIR SINE MIR -11 251 122 399 305 32 58 chr21 14376898 14377088 -30530482 - HAL1 LINE L1 -628 1879 1695 1052 313 146 26 chr21 14377101 14377693 -30529877 - L1ME1 LINE L1 -3 6232 5547 7016 174 108 65 chr21 14377693 14379375 -30528195 - MER52A LTR ERV1 0 1755 1 1052 313 146 26 chr21 14379375 14379460 -30528110 - L1ME1 LINE L1 -688 5547 5474 2311 89 0 3 chr21 14379527 14379831 -30527739 - AluY SINE Alu -6 305 3 641 275 83 106 chr21 14380002 14380435 -30527135 - MLT1H LTR MaLR -120 429 7 2987 278 116 39 chr21 14380441 14381522 -30526048 - L1ME1 LINE L1 -940 5275 4279 398 53 18 0 chr21 14381522 14381579 -30525991 + (TCTA)n Simple_repeat Simple_repeat 4 61 0 2987 278 116 39 chr21 14381579 14383553 -30524017 - L1ME1 LINE L1 -1936 4279 2020 512 226 19 82 chr21 14383608 14383767 -30523803 - MLT1E2 LTR MaLR -476 150 2 2148 125 6 3 chr21 14384108 14384419 -30523151 - AluSx SINE Alu 0 312 1 22 0 0 0 chr21 14384449 14384471 -30523099 + AT_rich Low_complexity Low_complexity 1 22 0 281 182 0 15 chr21 14386328 14386394 -30521176 + (TA)n Simple_repeat Simple_repeat 2 66 0 32 0 0 0 chr21 14386896 14386928 -30520642 + AT_rich Low_complexity Low_complexity 1 32 0 229 192 39 0 chr21 14387902 14387954 -30519616 + (TA)n Simple_repeat Simple_repeat 2 55 0 22 70 0 0 chr21 14392799 14392842 -30514728 + AT_rich Low_complexity Low_complexity 1 43 0 699 316 32 40 chr21 14393722 14393972 -30513598 - MIR SINE MIR -2 260 13 229 350 34 8 chr21 14394984 14395101 -30512469 - L3 LINE CR1 -435 1142 1023 561 255 115 13 chr21 14395475 14395632 -30511938 + MIR SINE MIR 13 185 -77 23 0 0 0 chr21 14395724 14395747 -30511823 + AT_rich Low_complexity Low_complexity 1 23 0 269 305 63 0 chr21 14396327 14396422 -30511148 + MIR SINE MIR 111 211 -51 489 299 0 0 chr21 14397497 14397631 -30509939 - MER94 DNA DNA 0 134 1 564 200 35 17 chr21 14397897 14398012 -30509558 - L2 LINE L2 -4 3309 3193 183 302 72 65 chr21 14398646 14398785 -30508785 - MIR3 SINE MIR -2 206 67 28 71 0 0 chr21 14398790 14398846 -30508724 + AT_rich Low_complexity Low_complexity 1 56 0 240 333 0 0 chr21 14400018 14400087 -30507483 + MIR SINE MIR 31 99 -109 2572 108 6 0 chr21 14401305 14401667 -30505903 - THE1B LTR MaLR 0 364 1 316 196 10 72 chr21 14401690 14401787 -30505783 - MER94 DNA DNA -40 94 4 192 351 98 23 chr21 14402452 14402626 -30504944 + L3b LINE CR1 1180 1366 -217 388 298 23 54 chr21 14402842 14403204 -30504366 + MLT1J2 LTR MaLR 7 445 -5 22 0 0 0 chr21 14403229 14403251 -30504319 + AT_rich Low_complexity Low_complexity 1 22 0 390 309 0 8 chr21 14403465 14403591 -30503979 - MLT1I LTR MaLR -277 132 8 489 288 27 14 chr21 14404416 14404635 -30502935 - L1MC5 LINE L1 -32 7929 7708 2348 248 58 20 chr21 14405818 14406524 -30501046 - L1ME1 LINE L1 -20 6146 5414 538 217 63 0 chr21 14406521 14406664 -30500906 - L1ME1 LINE L1 -2471 3675 3524 * 4896 270 77 50 chr21 14406686 14407202 -30500368 - L1MEc LINE L1 -748 5467 4966 1739 131 0 15 chr21 14407202 14407462 -30500108 + AluSx SINE Alu 40 295 -17 4896 270 77 50 chr21 14407462 14409455 -30498115 - L1MEc LINE L1 -1249 4966 3028 2220 55 0 0 chr21 14409455 14409751 -30497819 - AluY SINE Alu 0 305 10 4896 270 77 50 chr21 14409751 14411556 -30496014 - L1MEc LINE L1 -3187 3028 1073 1128 181 28 14 chr21 14411559 14411775 -30495795 - AluSx SINE Alu -76 236 18 1920 138 0 3 chr21 14411807 14412113 -30495457 - AluSx SINE Alu 0 305 1 2357 167 26 72 chr21 14413425 14413463 -30494107 - MLT2B2 LTR ERVL 0 515 477 497 68 14 0 chr21 14413463 14413537 -30494033 + (TAGA)n Simple_repeat Simple_repeat 2 76 0 2263 99 0 0 chr21 14413547 14413841 -30493729 + AluSg SINE Alu 1 294 -16 2357 167 26 72 chr21 14413841 14414330 -30493240 - MLT2B2 LTR ERVL -47 468 2 465 251 119 61 chr21 14414421 14414657 -30492913 - MIR SINE MIR 0 262 1 318 26 0 0 chr21 14415430 14415469 -30492101 + (TG)n Simple_repeat Simple_repeat 2 40 0 317 382 88 8 chr21 14415482 14415720 -30491850 + L2 LINE L2 2499 2755 -559 260 169 34 0 chr21 14415858 14415917 -30491653 + MER112 DNA MER1_type 67 127 -133 242 310 97 45 chr21 14415935 14416090 -30491480 + L2 LINE L2 3139 3301 -12 1096 136 124 33 chr21 14417584 14417891 -30489679 - L1M2 LINE L1 -748 5398 5202 * 9173 192 21 10 chr21 14417883 14419880 -30487690 - L1M2 LINE L1 -1417 4729 2710 310 234 199 55 chr21 14420509 14420710 -30486860 - L2 LINE L2 -82 3231 3002 386 304 120 40 chr21 14421171 14421497 -30486073 - L3 LINE CR1 -451 1126 775 3434 163 77 58 chr21 14421987 14422207 -30485363 - L1M LINE L1 -783 5363 5149 2443 28 0 7 chr21 14422207 14422522 -30485048 - AluY SINE Alu 0 313 1 3434 163 77 58 chr21 14422522 14422913 -30484657 - L1M LINE L1 -997 5149 4763 2239 110 7 0 chr21 14422913 14423221 -30484349 - AluSx SINE Alu 0 312 3 3434 163 77 58 chr21 14423221 14423463 -30484107 - L1M LINE L1 -1383 4763 4527 883 188 6 0 chr21 14423466 14423647 -30483923 + L1 LINE L1 4172 4353 -1793 26 50 0 0 chr21 14423750 14423790 -30483780 + AT_rich Low_complexity Low_complexity 1 40 0 21 36 0 0 chr21 14424171 14424199 -30483371 + AT_rich Low_complexity Low_complexity 1 28 0 1975 187 15 20 chr21 14424631 14425027 -30482543 - MSTD LTR MaLR 0 396 3 811 278 160 14 chr21 14425296 14425876 -30481694 - L2 LINE L2 -4 3309 2635 1523 206 79 27 chr21 14425938 14426306 -30481264 - MER82 DNA MER2_type -65 588 202 928 228 35 0 chr21 14426797 14426994 -30480576 - MER82 DNA MER2_type -449 204 1 1705 150 53 71 chr21 14427024 14427417 -30480153 + MLT1B LTR MaLR 1 386 -4 288 324 18 0 chr21 14427468 14427579 -30479991 - L2 LINE L2 -735 2579 2467 25 0 0 0 chr21 14427819 14427844 -30479726 + AT_rich Low_complexity Low_complexity 1 25 0 22 35 0 0 chr21 14428882 14428911 -30478659 + AT_rich Low_complexity Low_complexity 1 29 0 349 340 5 65 chr21 14429108 14429323 -30478247 - MIR SINE MIR -55 207 6 284 284 42 60 chr21 14431586 14431801 -30475769 + L1ME LINE L1 544 754 -5316 1176 163 144 38 chr21 14431839 14431877 -30475693 + AluJo SINE Alu 3 36 -276 2050 113 76 48 chr21 14431877 14432065 -30475505 - THE1B LTR MaLR 0 364 183 1941 86 16 0 chr21 14432065 14432322 -30475248 - AluY SINE Alu -14 297 37 2050 113 76 48 chr21 14432322 14432487 -30475083 - THE1B LTR MaLR -181 183 1 1176 163 144 38 chr21 14432487 14432712 -30474858 + AluJo SINE Alu 36 294 -18 1457 124 0 5 chr21 14432799 14433009 -30474561 + AluSg/x SINE Alu 97 305 -5 394 256 108 35 chr21 14433020 14433223 -30474347 + L1ME LINE L1 839 1056 -5027 662 203 125 57 chr21 14433599 14433791 -30473779 - MER3 DNA MER1_type 0 209 5 336 335 92 57 chr21 14434005 14434546 -30473024 - HAL1 LINE L1 -1843 664 105 704 267 59 59 chr21 14434906 14435161 -30472409 + MIR SINE MIR 6 260 -2 26 0 0 0 chr21 14436315 14436341 -30471229 + AT_rich Low_complexity Low_complexity 1 26 0 608 297 98 14 chr21 14437268 14437685 -30469885 - L1M4 LINE L1 -1219 4927 4476 315 309 47 7 chr21 14437774 14437923 -30469647 - L1M4 LINE L1 -1796 4350 4196 408 219 93 55 chr21 14437935 14438118 -30469452 - L1M4 LINE L1 -2028 4118 3929 810 276 31 37 chr21 14438118 14438561 -30469009 - L1P5 LINE L1 -617 5537 5080 2157 102 6 10 chr21 14438561 14438874 -30468696 - AluSx SINE Alu 0 312 1 810 276 31 37 chr21 14438874 14439025 -30468545 - L1P5 LINE L1 -1074 5080 4930 208 120 40 0 chr21 14439025 14439075 -30468495 + (TA)n Simple_repeat Simple_repeat 1 52 0 729 179 6 48 chr21 14439610 14439778 -30467792 - L1PA15 LINE L1 0 6165 6005 375 178 14 14 chr21 14439969 14440042 -30467528 - Tigger2 DNA MER2_type -2645 73 1 397 286 14 11 chr21 14440043 14440231 -30467339 - L1MEd LINE L1 -4549 1580 1434 723 281 80 48 chr21 14440246 14440976 -30466594 - L1MEd LINE L1 -4865 1254 580 23 33 0 0 chr21 14444479 14444509 -30463061 + AT_rich Low_complexity Low_complexity 1 30 0 272 301 142 0 chr21 14444735 14444848 -30462722 + MIR3 SINE MIR 67 195 -13 22 0 0 0 chr21 14444939 14444961 -30462609 + AT_rich Low_complexity Low_complexity 1 22 0 6664 79 0 5 chr21 14445320 14446482 -30461088 - L1PA7 LINE L1 0 6154 4992 25861 131 12 73 chr21 14446482 14451477 -30456093 - L1PA7 LINE L1 -1441 4705 12 22 0 0 0 chr21 14451891 14451913 -30455657 + AT_rich Low_complexity Low_complexity 1 22 0 192 333 20 30 chr21 14452691 14452790 -30454780 + MIR SINE MIR 21 118 -90 332 239 11 11 chr21 14453067 14453155 -30454415 + MLT1I LTR MaLR 316 403 -6 231 253 114 38 chr21 14453249 14453328 -30454242 - MIR SINE MIR -61 147 63 3416 140 15 2 chr21 14453705 14454225 -30453345 + MER1A DNA MER1_type 1 527 0 316 267 0 12 chr21 14454339 14454425 -30453145 + MIR SINE MIR 173 257 -5 257 279 58 0 chr21 14454599 14454685 -30452885 - MIR SINE MIR -101 161 71 309 365 1 0 chr21 14455760 14455877 -30451693 + MIR SINE MIR 34 150 -63 388 299 43 18 chr21 14455882 14456046 -30451524 + MIR SINE MIR 5 172 -90 821 121 0 0 chr21 14456108 14456232 -30451338 + MER2 DNA MER2_type 67 190 -155 6052 155 89 6 chr21 14456232 14457076 -30450494 + Tigger3b DNA MER2_type 1 965 -2063 2051 148 44 101 chr21 14457076 14457530 -30450040 - MSTA LTR MaLR 0 428 1 6052 155 89 6 chr21 14457530 14457822 -30449748 + Tigger3b DNA MER2_type 965 1231 0 339 256 26 0 chr21 14457890 14457968 -30449602 + MER2 DNA MER2_type 264 343 -2 713 251 103 0 chr21 14457996 14458199 -30449371 - MER58A DNA MER1_type 0 224 1 583 304 113 4 chr21 14458513 14458770 -30448800 + L2 LINE L2 2298 2582 -732 444 188 20 50 chr21 14459117 14459218 -30448352 + Tigger1 DNA MER2_type 2 99 -2319 3908 113 41 2 chr21 14459236 14459840 -30447730 - L1PA13 LINE L1 -2 6812 6185 2026 109 0 0 chr21 14459854 14460120 -30447450 - AluSc SINE Alu -8 301 36 14731 180 14 11 chr21 14460120 14463055 -30444515 - L1PA13 LINE L1 -749 6048 3104 7026 230 82 6 chr21 14463045 14464588 -30442982 - L1PA13 LINE L1 -5123 1664 4 * 12853 138 17 5 chr21 14464605 14466630 -30440940 + Tigger1 DNA MER2_type 103 2150 -268 1487 170 8 0 chr21 14466777 14467036 -30440534 + Tigger1 DNA MER2_type 2158 2418 0 21 0 0 0 chr21 14467251 14467272 -30440298 + AT_rich Low_complexity Low_complexity 1 21 0 24 53 0 0 chr21 14467526 14467564 -30440006 + AT_rich Low_complexity Low_complexity 1 38 0 2870 6 0 0 chr21 14467742 14468053 -30439517 - AluYa5 SINE Alu 0 311 1 200 204 0 45 chr21 14468227 14468271 -30439299 + L2 LINE L2 3211 3252 -20 18133 29 1 1 chr21 14468312 14471249 -30436321 - L1PA3 LINE L1 -3 6152 3214 366 298 57 14 chr21 14471250 14471391 -30436179 + MIR SINE MIR 116 262 0 203 276 0 0 chr21 14471391 14471449 -30436121 + T-rich Low_complexity Low_complexity 1 58 0 23 0 0 0 chr21 14472049 14472072 -30435498 + AT_rich Low_complexity Low_complexity 1 23 0 338 0 24 0 chr21 14472779 14472821 -30434749 + (TAAA)n Simple_repeat Simple_repeat 2 44 0 540 202 12 89 chr21 14473636 14473700 -30433870 + MIR SINE MIR 106 173 -89 2038 128 7 3 chr21 14473700 14473997 -30433573 - AluSx SINE Alu -14 298 1 540 202 12 89 chr21 14473997 14474100 -30433470 + MIR SINE MIR 173 260 -2 1668 144 27 33 chr21 14474318 14474617 -30432953 + AluJb SINE Alu 1 297 -15 620 307 9 42 chr21 14474940 14475155 -30432415 + MIR SINE MIR 49 256 -6 2071 135 0 0 chr21 14475509 14475806 -30431764 - AluSg SINE Alu -13 297 1 716 236 33 6 chr21 14476692 14476874 -30430696 + MER5A DNA MER1_type 1 187 -2 338 260 172 26 chr21 14476874 14477060 -30430510 + MARNA DNA Mariner 32 245 -341 22 0 0 0 chr21 14478174 14478196 -30429374 + AT_rich Low_complexity Low_complexity 1 22 0 1779 167 7 0 chr21 14478200 14478499 -30429071 + AluSx SINE Alu 1 301 -11 945 140 11 6 chr21 14478527 14478706 -30428864 + CT-rich Low_complexity Low_complexity 1 180 0 1517 153 68 82 chr21 14478745 14479014 -30428556 - MER46B DNA MER2_type -2496 235 96 1913 58 0 0 chr21 14479014 14479254 -30428316 - L1PA4 LINE L1 -3 6152 5913 1517 153 68 82 chr21 14479254 14479349 -30428221 - MER46B DNA MER2_type -2635 96 1 25 31 0 0 chr21 14479490 14479522 -30428048 + AT_rich Low_complexity Low_complexity 1 32 0 1843 119 56 0 chr21 14479593 14479861 -30427709 - AluSx SINE Alu -10 302 20 977 168 12 0 chr21 14480456 14480629 -30426941 + MER5B DNA MER1_type 4 178 0 974 227 134 7 chr21 14481748 14482047 -30425523 + MER44D DNA MER2_type 3 609 0 2125 88 0 7 chr21 14482115 14482398 -30425172 - AluSc SINE Alu 0 309 29 378 0 0 0 chr21 14483601 14483643 -30423927 + (A)n Simple_repeat Simple_repeat 1 42 0 230 182 18 18 chr21 14483698 14483753 -30423817 + (TCTCTG)n Simple_repeat Simple_repeat 6 60 0 396 0 0 0 chr21 14484976 14485020 -30422550 + (TG)n Simple_repeat Simple_repeat 2 45 0 293 318 113 33 chr21 14485508 14485659 -30421911 + MIR3 SINE MIR 44 206 -2 249 295 48 60 chr21 14486230 14486396 -30421174 + MIR3 SINE MIR 32 195 -13 21 0 0 0 chr21 14486522 14486543 -30421027 + AT_rich Low_complexity Low_complexity 1 21 0 180 111 0 0 chr21 14488085 14488112 -30419458 + (TG)n Simple_repeat Simple_repeat 2 28 0 259 303 53 0 chr21 14488479 14488555 -30419015 + MIR3 SINE MIR 108 187 -21 10987 133 55 34 chr21 14488733 14489423 -30418147 - Tigger1 DNA MER2_type 0 2418 1744 2514 69 0 0 chr21 14489423 14489727 -30417843 - AluY SINE Alu -7 304 1 10987 133 55 34 chr21 14489727 14490772 -30416798 - Tigger1 DNA MER2_type -674 1744 722 2637 45 0 0 chr21 14490772 14491083 -30416487 - AluY SINE Alu 0 311 1 10987 133 55 34 chr21 14491083 14491321 -30416249 - Tigger1 DNA MER2_type -1696 722 490 1808 142 51 0 chr21 14491321 14491476 -30416094 - AluSx SINE Alu -21 291 114 213 65 0 0 chr21 14491476 14491507 -30416063 + (TTTTA)n Simple_repeat Simple_repeat 2 32 0 1808 142 51 0 chr21 14491507 14491626 -30415944 - AluSx SINE Alu -198 114 3 10987 133 55 34 chr21 14491626 14492046 -30415524 - Tigger1 DNA MER2_type -1928 490 1 233 259 35 0 chr21 14492264 14492322 -30415248 + L2 LINE L2 3254 3313 0 219 185 19 0 chr21 14492367 14492421 -30415149 + (TA)n Simple_repeat Simple_repeat 1 55 0 295 152 53 12 chr21 14492506 14492677 -30414893 + (TA)n Simple_repeat Simple_repeat 1 178 0 524 266 167 5 chr21 14493761 14493953 -30413617 + MIR SINE MIR 31 253 -9 346 364 35 12 chr21 14496318 14496491 -30411079 - MIR SINE MIR -36 226 50 195 42 0 0 chr21 14496753 14496777 -30410793 + (GAAAA)n Simple_repeat Simple_repeat 2 25 0 280 214 0 0 chr21 14497010 14497080 -30410490 + L1MA4 LINE L1 6220 6289 -11 29 0 0 0 chr21 14497181 14497210 -30410360 + AT_rich Low_complexity Low_complexity 1 29 0 211 381 0 14 chr21 14497817 14497956 -30409614 - L2 LINE L2 -251 3062 2926 374 274 110 46 chr21 14499968 14500296 -30407274 - HAL1 LINE L1 -115 2392 2044 601 128 8 8 chr21 14500297 14500414 -30407156 + (TCCC)n Simple_repeat Simple_repeat 3 119 0 2137 93 7 10 chr21 14500416 14500705 -30406865 - AluSx SINE Alu -14 298 11 267 331 6 11 chr21 14500706 14500814 -30406756 + CT-rich Low_complexity Low_complexity 3 177 0 223 47 0 47 chr21 14501131 14501174 -30406396 + (TTTTTG)n Simple_repeat Simple_repeat 2 42 0 501 226 15 13 chr21 14501204 14501336 -30406234 + MLT1D LTR MaLR 365 615 -9 559 201 13 0 chr21 14501592 14501741 -30405829 + C-rich Low_complexity Low_complexity 1 151 0 201 374 56 0 chr21 14501756 14501863 -30405707 - L2 LINE L2 -30 3283 3171 2312 103 0 0 chr21 14501946 14502327 -30405243 + AluSg SINE Alu 1 381 0 267 315 117 49 chr21 14502592 14502644 -30404926 - L2 LINE L2 -459 2855 2808 225 0 0 0 chr21 14502644 14502669 -30404901 + (TTA)n Simple_repeat Simple_repeat 2 26 0 267 315 117 49 chr21 14502669 14502924 -30404646 - L2 LINE L2 -506 2808 2527 869 196 29 0 chr21 14503341 14503514 -30404056 - AluJo SINE Alu -134 178 1 584 174 7 20 chr21 14505628 14505777 -30401793 + CT-rich Low_complexity Low_complexity 3 149 0 946 310 58 19 chr21 14506690 14507067 -30400503 + L2 LINE L2 2922 3313 0 313 350 0 0 chr21 14507086 14507209 -30400361 - L1ME LINE L1 -521 5600 5478 2149 90 3 10 chr21 14507266 14507567 -30400003 - AluSg SINE Alu -3 307 9 3018 138 15 4 chr21 14507739 14508219 -30399351 - L1PA16 LINE L1 -14 6152 5668 37 23 0 0 chr21 14509756 14509800 -30397770 + AT_rich Low_complexity Low_complexity 1 44 0 25 0 0 0 chr21 14510565 14510590 -30396980 + AT_rich Low_complexity Low_complexity 1 25 0 22 0 0 0 chr21 14511694 14511716 -30395854 + AT_rich Low_complexity Low_complexity 1 22 0 297 0 0 0 chr21 14515143 14515176 -30392394 + (TG)n Simple_repeat Simple_repeat 1 33 0 2197 93 7 29 chr21 14515615 14515925 -30391645 - AluSc SINE Alu -5 304 2 310 273 79 30 chr21 14515951 14516116 -30391454 - L1MEd LINE L1 -4972 1147 975 659 176 0 8 chr21 14517893 14518012 -30389558 - MSTD LTR MaLR -1 395 278 4508 80 20 2 chr21 14518082 14518694 -30388876 - L1PA10 LINE L1 -10 6158 5536 848 222 38 5 chr21 14518817 14519002 -30388568 - MSTD LTR MaLR -205 191 1 194 371 215 5 chr21 14519072 14519439 -30388131 + L2 LINE L2 2040 2483 -831 621 321 64 0 chr21 14519548 14519797 -30387773 - LTR16C LTR ERVL -222 269 5 343 297 35 78 chr21 14519812 14520078 -30387492 - L1MC/D LINE L1 -372 5749 5497 2481 74 0 13 chr21 14520078 14520387 -30387183 - AluSp SINE Alu -8 305 1 343 297 35 78 chr21 14520387 14520483 -30387087 - L1MC/D LINE L1 -624 5497 5398 396 319 48 14 chr21 14520595 14520802 -30386768 - L1MC/D LINE L1 -784 5362 5149 2196 122 0 10 chr21 14521261 14521565 -30386005 - AluSx SINE Alu -9 303 3 384 302 141 60 chr21 14522503 14522903 -30384667 - MLT1J LTR MaLR -42 408 1 1980 113 3 75 chr21 14523772 14524092 -30383478 + AluSx SINE Alu 4 300 -12 26 64 0 0 chr21 14524197 14524244 -30383326 + AT_rich Low_complexity Low_complexity 1 47 0 26 82 0 0 chr21 14524930 14524991 -30382579 + AT_rich Low_complexity Low_complexity 1 61 0 222 37 0 0 chr21 14525809 14525836 -30381734 + (CA)n Simple_repeat Simple_repeat 2 28 0 2087 106 7 0 chr21 14527228 14527538 -30380032 + AluSx SINE Alu 1 312 0 23 33 0 0 chr21 14528843 14528873 -30378697 + AT_rich Low_complexity Low_complexity 1 30 0 246 238 0 0 chr21 14529160 14529202 -30378368 - MLT1J2 LTR MaLR -141 309 268 293 300 92 8 chr21 14529240 14529370 -30378200 - MLT1J2 LTR MaLR -263 187 47 2045 127 7 10 chr21 14532509 14532809 -30374761 - AluSp SINE Alu -13 300 2 358 306 90 0 chr21 14534594 14534738 -30372832 + MIR SINE MIR 50 206 -56 344 111 16 0 chr21 14536044 14536107 -30371463 + (TA)n Simple_repeat Simple_repeat 1 64 0 2530 67 0 10 chr21 14536109 14536446 -30371124 - AluY SINE Alu 0 334 1 24 0 0 0 chr21 14536456 14536480 -30371090 + AT_rich Low_complexity Low_complexity 1 24 0 354 360 75 53 chr21 14537599 14537908 -30369662 - L2 LINE L2 -460 2854 2553 288 0 0 0 chr21 14537908 14537940 -30369630 + (TG)n Simple_repeat Simple_repeat 2 33 0 2152 121 16 0 chr21 14537944 14538251 -30369319 - AluSp SINE Alu -1 312 1 354 360 75 53 chr21 14538251 14538563 -30369007 - L2 LINE L2 -763 2551 2214 342 0 0 0 chr21 14538631 14538669 -30368901 + (TA)n Simple_repeat Simple_repeat 2 39 0 211 327 94 66 chr21 14538685 14539003 -30368567 - L2 LINE L2 -1387 1927 1601 303 340 125 54 chr21 14539148 14539539 -30368031 + L2 LINE L2 2330 2748 -566 388 317 8 0 chr21 14541651 14541771 -30365799 + L2 LINE L2 3190 3310 -3 254 273 71 30 chr21 14541800 14541899 -30365671 + MIR SINE MIR 44 146 -62 29946 120 19 53 chr21 14542172 14548538 -30359032 + L1PA7 LINE L1 13 6149 -5 26 0 0 0 chr21 14549095 14549121 -30358449 + AT_rich Low_complexity Low_complexity 1 26 0 757 253 25 10 chr21 14549926 14550124 -30357446 + MIR SINE MIR 46 246 -16 326 328 81 57 chr21 14550179 14550514 -30357056 - L1M4 LINE L1 -1839 4307 3965 21 36 0 0 chr21 14550561 14550589 -30356981 + AT_rich Low_complexity Low_complexity 1 28 0 274 143 0 0 chr21 14551284 14551333 -30356237 - L1MC4 LINE L1 -1339 6703 6655 1793 174 0 10 chr21 14551333 14551631 -30355939 - AluSx SINE Alu -7 305 11 203 328 15 0 chr21 14552394 14552461 -30355109 - L2 LINE L2 0 3272 3205 25 31 0 0 chr21 14552701 14552733 -30354837 + AT_rich Low_complexity Low_complexity 1 32 0 386 323 47 28 chr21 14553788 14554042 -30353528 - L3 LINE CR1 -593 984 726 27 62 0 0 chr21 14555012 14555060 -30352510 + AT_rich Low_complexity Low_complexity 1 48 0 23 33 0 0 chr21 14555119 14555149 -30352421 + AT_rich Low_complexity Low_complexity 1 30 0 270 246 15 0 chr21 14555393 14555458 -30352112 - MER5B DNA MER1_type -3 175 110 259 206 137 14 chr21 14555463 14555536 -30352034 + L1MA10 LINE L1 6213 6294 -40 446 319 0 8 chr21 14555624 14555743 -30351827 - MER5B DNA MER1_type -59 119 2 251 209 0 70 chr21 14555810 14555896 -30351674 - L1MC4 LINE L1 -1339 6703 6624 180 0 0 0 chr21 14555896 14555916 -30351654 + (TG)n Simple_repeat Simple_repeat 2 21 0 1731 167 7 10 chr21 14555933 14556226 -30351344 - AluJo SINE Alu -20 292 1 1418 142 0 9 chr21 14556276 14556487 -30351083 + AluJb SINE Alu 87 295 -17 275 324 62 11 chr21 14556963 14557139 -30350431 + Tigger8 DNA MER2_type 161 345 -321 331 263 0 0 chr21 14557260 14557340 -30350230 - MLT1I LTR MaLR -6 403 324 2030 142 7 0 chr21 14557354 14557663 -30349907 - AluSx SINE Alu 0 312 2 325 300 11 0 chr21 14557781 14557871 -30349699 - MLT1I LTR MaLR -280 129 39 683 192 0 0 chr21 14558611 14558731 -30348839 - FLAM_A SINE Alu -13 129 10 21 0 0 0 chr21 14558849 14558870 -30348700 + AT_rich Low_complexity Low_complexity 1 21 0 23 33 0 0 chr21 14560742 14560772 -30346798 + AT_rich Low_complexity Low_complexity 1 30 0 31 26 0 0 chr21 14561613 14561651 -30345919 + AT_rich Low_complexity Low_complexity 1 38 0 2059 133 3 7 chr21 14561998 14562307 -30345263 + AluSx SINE Alu 5 312 0 23 33 0 0 chr21 14562694 14562724 -30344846 + AT_rich Low_complexity Low_complexity 1 30 0 1612 199 6 18 chr21 14564333 14564670 -30342900 - MLT1A1 LTR MaLR -7 358 26 269 337 23 86 chr21 14565234 14565409 -30342161 - MER5A DNA MER1_type -5 184 21 2034 124 7 0 chr21 14565548 14565847 -30341723 + AluSx SINE Alu 1 301 -11 387 0 0 0 chr21 14565866 14565909 -30341661 + (TATG)n Simple_repeat Simple_repeat 2 44 0 2069 101 0 37 chr21 14565909 14566207 -30341363 - AluSx SINE Alu -25 287 1 2008 121 50 0 chr21 14567585 14567883 -30339687 - AluSq SINE Alu 0 313 1 228 291 112 15 chr21 14568142 14568276 -30339294 - MLT1L LTR MaLR -7 608 462 186 167 0 0 chr21 14569060 14569096 -30338474 + (TA)n Simple_repeat Simple_repeat 2 37 0 238 0 53 26 chr21 14569203 14569241 -30338329 + (TTTTG)n Simple_repeat Simple_repeat 2 40 0 1341 97 6 0 chr21 14569244 14569420 -30338150 - AluSg/x SINE Alu -27 283 107 506 139 13 0 chr21 14569454 14569533 -30338037 - L1PB4 LINE L1 -12 6144 6065 1816 159 43 35 chr21 14571495 14571866 -30335704 - THE1C LTR MaLR -1 374 1 186 365 0 27 chr21 14572254 14572328 -30335242 - L3 LINE CR1 -942 635 564 24 32 0 0 chr21 14575916 14575947 -30331623 + AT_rich Low_complexity Low_complexity 1 31 0 255 208 21 10 chr21 14577735 14577831 -30329739 + (TA)n Simple_repeat Simple_repeat 1 97 0 364 307 45 12 chr21 14577919 14578163 -30329407 + HAL1b LINE L1 629 880 -468 303 28 0 0 chr21 14578414 14578450 -30329120 + (TCCA)n Simple_repeat Simple_repeat 4 39 0 252 0 0 0 chr21 14578567 14578595 -30328975 + (T)n Simple_repeat Simple_repeat 1 28 0 24 0 0 0 chr21 14579195 14579219 -30328351 + AT_rich Low_complexity Low_complexity 1 24 0 2155 108 7 0 chr21 14580572 14580867 -30326703 - AluSq SINE Alu -16 297 1 441 279 191 5 chr21 14580964 14581179 -30326391 + MIR SINE MIR 3 257 -5 311 78 20 0 chr21 14581679 14581730 -30325840 + (TAGA)n Simple_repeat Simple_repeat 3 54 0 184 265 153 31 chr21 14582393 14582491 -30325079 + MIR3 SINE MIR 93 202 -6 1704 103 0 0 chr21 14583344 14583567 -30324003 + AluSg/x SINE Alu 78 300 -12 349 233 16 78 chr21 14583911 14584040 -30323530 - MLT1J LTR MaLR -52 459 339 237 356 78 11 chr21 14585628 14585718 -30321852 - L2 LINE L2 -15 3257 3162 639 294 72 8 chr21 14587775 14588010 -30319560 - MIR SINE MIR -10 252 3 960 208 30 118 chr21 14588901 14589301 -30318269 - MLT1A1 LTR MaLR 0 365 1 313 214 0 0 chr21 14589352 14589408 -30318162 - Charlie5 DNA MER1_type -2556 56 1 198 0 0 0 chr21 14590948 14590970 -30316600 + (A)n Simple_repeat Simple_repeat 1 22 0 239 104 21 0 chr21 14590990 14591038 -30316532 + (GA)n Simple_repeat Simple_repeat 2 50 0 312 348 126 0 chr21 14591131 14591266 -30316304 + MIR SINE MIR 20 171 -91 213 382 59 0 chr21 14591259 14591361 -30316209 + L2 LINE L2 3206 3313 0 * 2319 107 0 0 chr21 14591365 14591664 -30315906 + AluSx SINE Alu 1 299 -13 23 54 0 0 chr21 14591683 14591720 -30315850 + AT_rich Low_complexity Low_complexity 1 37 0 1989 147 0 0 chr21 14592935 14593235 -30314335 + AluSx SINE Alu 1 300 -12 499 323 106 4 chr21 14593960 14594186 -30313384 - MIR SINE MIR 0 262 14 269 380 82 0 chr21 14594719 14594877 -30312693 - MIR SINE MIR -87 175 5 1276 208 64 69 chr21 14595182 14595571 -30311999 - MLT1B LTR MaLR -3 387 1 26 0 0 0 chr21 14596408 14596434 -30311136 + AT_rich Low_complexity Low_complexity 1 26 0 423 0 0 0 chr21 14602492 14602539 -30305031 + (TG)n Simple_repeat Simple_repeat 2 48 0 25 0 0 0 chr21 14602779 14602804 -30304766 + AT_rich Low_complexity Low_complexity 1 25 0 23 54 0 0 chr21 14602856 14602893 -30304677 + AT_rich Low_complexity Low_complexity 1 37 0 199 310 0 46 chr21 14604849 14604936 -30302634 + MIR SINE MIR 59 141 -121 200 375 21 0 chr21 14607246 14607342 -30300228 - MIR3 SINE MIR 0 208 111 183 42 0 0 chr21 14608061 14608085 -30299485 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 2624 10 0 7 chr21 14608145 14608445 -30299125 - AluYb8 SINE Alu -17 301 4 1000 322 94 26 chr21 14610293 14611197 -30296373 + L2 LINE L2 2339 3309 -4 225 361 136 16 chr21 14611253 14611444 -30296126 + MIR SINE MIR 30 243 -19 729 153 0 0 chr21 14611486 14611597 -30295973 + AluSg/x SINE Alu 173 283 -29 2778 0 0 7 chr21 14613886 14614194 -30293376 - AluY SINE Alu -5 306 1 677 208 13 13 chr21 14614194 14614343 -30293227 - L1MD3 LINE L1 -7 7988 7837 1160 106 12 0 chr21 14614400 14614586 -30292984 + AluSp SINE Alu 120 307 0 904 322 42 21 chr21 14615185 14615592 -30291978 + L2 LINE L2 2420 2838 -476 2285 128 11 13 chr21 14615592 14615968 -30291602 + THE1C LTR MaLR 1 375 0 904 322 42 21 chr21 14615968 14615986 -30291584 + L2 LINE L2 2838 2854 -460 1012 91 0 0 chr21 14617030 14617162 -30290408 + AluSg SINE Alu 2 133 -177 2428 88 0 0 chr21 14617162 14617470 -30290100 + AluSg SINE Alu 1 308 -2 25 51 0 0 chr21 14617960 14617999 -30289571 + AT_rich Low_complexity Low_complexity 1 39 0 1549 162 52 0 chr21 14619001 14619273 -30288297 + AluSx SINE Alu 1 286 -26 22 35 0 0 chr21 14620518 14620547 -30287023 + AT_rich Low_complexity Low_complexity 1 29 0 21 36 0 0 chr21 14621459 14621487 -30286083 + AT_rich Low_complexity Low_complexity 1 28 0 853 176 176 32 chr21 14621677 14621955 -30285615 + L1MA9 LINE L1 5995 6312 0 222 109 0 65 chr21 14623547 14623593 -30283977 + (CAAAA)n Simple_repeat Simple_repeat 3 45 0 23 33 0 0 chr21 14624205 14624235 -30283335 + AT_rich Low_complexity Low_complexity 1 30 0 26 0 0 0 chr21 14624805 14624831 -30282739 + AT_rich Low_complexity Low_complexity 1 26 0 229 323 15 0 chr21 14629945 14630010 -30277560 + L2 LINE L2 3248 3313 0 323 311 7 13 chr21 14630295 14630446 -30277124 + MER103 DNA DNA 10 159 -7 827 256 5 28 chr21 14630493 14630704 -30276866 - MER63A DNA MER1_type -4 206 1 246 352 65 37 chr21 14631612 14631720 -30275850 - L2 LINE L2 -24 3248 3138 250 64 43 0 chr21 14631842 14631889 -30275681 - LTR66 LTR ERVL -172 438 390 27 29 0 0 chr21 14632602 14632636 -30274934 + AT_rich Low_complexity Low_complexity 1 34 0 28 91 0 0 chr21 14633513 14633590 -30273980 + AT_rich Low_complexity Low_complexity 1 77 0 363 229 17 8 chr21 14633874 14634121 -30273449 + (TA)n Simple_repeat Simple_repeat 1 249 0 368 200 13 0 chr21 14634600 14634669 -30272901 - MER5A DNA MER1_type -87 102 33 315 307 106 22 chr21 14634669 14634880 -30272690 + MIR3 SINE MIR 1 218 -44 290 311 0 0 chr21 14635057 14635131 -30272439 - L2 LINE L2 0 3272 3199 349 324 43 27 chr21 14635944 14636129 -30271441 + MIR SINE MIR 2 189 -73 182 333 50 0 chr21 14636618 14636678 -30270892 - L2 LINE L2 -5 3308 3246 689 313 40 36 chr21 14636752 14637277 -30270293 - L2 LINE L2 -158 3155 2636 276 325 130 13 chr21 14637279 14637433 -30270137 - MER63A DNA MER1_type 0 210 39 191 114 29 0 chr21 14637464 14637499 -30270071 + CT-rich Low_complexity Low_complexity 1 36 0 927 304 18 70 chr21 14637597 14638051 -30269519 - L2 LINE L2 -675 2639 2210 23 0 0 0 chr21 14638167 14638190 -30269380 + AT_rich Low_complexity Low_complexity 1 23 0 204 300 83 42 chr21 14638309 14638429 -30269141 - MER5A DNA MER1_type -2 187 63 24 53 0 0 chr21 14638540 14638578 -30268992 + AT_rich Low_complexity Low_complexity 1 38 0 209 205 0 0 chr21 14640262 14640301 -30267269 + (TATG)n Simple_repeat Simple_repeat 2 40 0 23 0 0 0 chr21 14641056 14641079 -30266491 + AT_rich Low_complexity Low_complexity 1 23 0 25 0 0 0 chr21 14642025 14642050 -30265520 + AT_rich Low_complexity Low_complexity 1 25 0 292 174 41 0 chr21 14642421 14642542 -30265028 + (TA)n Simple_repeat Simple_repeat 1 126 0 262 211 63 0 chr21 14643461 14643556 -30264014 + (TA)n Simple_repeat Simple_repeat 2 102 0 398 19 0 19 chr21 14643757 14643809 -30263761 + (TG)n Simple_repeat Simple_repeat 2 52 0 700 295 52 71 chr21 14643896 14644438 -30263132 - L2 LINE L2 0 3313 2730 2136 109 3 0 chr21 14644497 14644790 -30262780 + AluSc SINE Alu 1 294 -15 23 68 0 0 chr21 14645657 14645701 -30261869 + AT_rich Low_complexity Low_complexity 1 44 0 797 219 139 14 chr21 14647256 14647544 -30260026 + MER5C DNA MER1_type 1 324 0 212 264 40 80 chr21 14647544 14647601 -30259969 + L3 LINE CR1 910 961 -616 221 264 28 42 chr21 14648839 14648911 -30258659 - MER5A DNA MER1_type -110 79 9 402 242 15 152 chr21 14649033 14649231 -30258339 + MIR SINE MIR 26 196 -66 288 237 53 0 chr21 14649235 14649311 -30258259 - MER116 DNA Mariner 0 80 1 22 0 0 0 chr21 14649710 14649732 -30257838 + AT_rich Low_complexity Low_complexity 1 22 0 1224 114 0 0 chr21 14650346 14650522 -30257048 - AluSg/x SINE Alu -10 302 127 1910 230 60 1 chr21 14650575 14651050 -30256520 + L1MB3 LINE L1 5638 6153 -18 1067 138 32 122 chr21 14651301 14651610 -30255960 - MLT1A1 LTR MaLR 0 374 1 198 291 93 12 chr21 14651637 14651723 -30255847 + MIR SINE MIR 170 262 0 2210 119 3 0 chr21 14651975 14652287 -30255283 - AluSp SINE Alu 0 313 1 229 296 25 37 chr21 14652444 14652525 -30255045 - MIR SINE MIR -110 98 19 2336 66 7 3 chr21 14652931 14653232 -30254338 - AluY SINE Alu -9 302 1 398 310 165 12 chr21 14654262 14654517 -30253053 - L1ME4a LINE L1 -3 6118 5825 676 236 189 0 chr21 14655343 14655555 -30252015 + MIR SINE MIR 11 262 0 210 392 42 8 chr21 14655578 14655698 -30251872 - MIR3 SINE MIR -80 128 5 23 33 0 0 chr21 14656793 14656823 -30250747 + AT_rich Low_complexity Low_complexity 1 30 0 229 159 32 0 chr21 14657793 14657856 -30249714 + (TA)n Simple_repeat Simple_repeat 2 66 0 259 279 37 96 chr21 14657899 14658035 -30249535 + MIR SINE MIR 20 147 -115 346 298 192 7 chr21 14658249 14658400 -30249170 - L3 LINE CR1 -1 1576 1398 219 376 45 8 chr21 14658439 14658572 -30248998 - L3 LINE CR1 -303 1274 1137 1708 168 85 0 chr21 14658860 14659188 -30248382 - MER93b LTR ERV1 -17 356 1 628 218 150 51 chr21 14659284 14659578 -30247992 - MER5C DNA MER1_type -1 323 1 220 208 151 82 chr21 14659629 14659788 -30247782 - L2 LINE L2 -55 3258 3089 35 24 0 0 chr21 14659983 14660025 -30247545 + AT_rich Low_complexity Low_complexity 1 42 0 354 332 38 38 chr21 14660027 14660238 -30247332 - L1M4 LINE L1 -2370 3776 3566 265 267 33 25 chr21 14660269 14660389 -30247181 - L1MEd LINE L1 -5084 1035 915 22 0 0 0 chr21 14661464 14661486 -30246084 + AT_rich Low_complexity Low_complexity 1 22 0 29 47 0 0 chr21 14662985 14663028 -30244542 + AT_rich Low_complexity Low_complexity 1 43 0 371 323 145 11 chr21 14663839 14664025 -30243545 - MIR SINE MIR 0 262 52 440 319 43 34 chr21 14664078 14664313 -30243257 + MIR SINE MIR 26 262 0 1774 179 3 3 chr21 14666749 14667039 -30240531 - AluJb SINE Alu -22 290 1 25 65 0 0 chr21 14667304 14667350 -30240220 + AT_rich Low_complexity Low_complexity 1 46 0 229 220 0 0 chr21 14667442 14667492 -30240078 + A-rich Low_complexity Low_complexity 1 50 0 1908 135 3 26 chr21 14667508 14667811 -30239759 - AluSp SINE Alu -17 296 1 1122 209 106 32 chr21 14668054 14668394 -30239176 - MLT1A1 LTR MaLR 0 365 1 633 211 106 19 chr21 14668404 14668565 -30239005 - MLT1A1-int LTR MaLR -11 1724 1550 380 253 71 56 chr21 14668646 14668844 -30238726 - L1ME LINE L1 -306 5815 5615 255 61 0 0 chr21 14669202 14669235 -30238335 + (TTTTC)n Simple_repeat Simple_repeat 2 34 0 1873 117 50 73 chr21 14669260 14669644 -30237926 + THE1C LTR MaLR 1 375 0 1802 201 110 62 chr21 14669697 14670395 -30237175 + MER50 LTR ERV1 1 732 -2 1315 304 102 43 chr21 14670727 14670953 -30236617 - L2 LINE L2 -378 2936 2725 2551 41 0 10 chr21 14670953 14671267 -30236303 - AluY SINE Alu 0 311 1 1315 304 102 43 chr21 14671267 14671550 -30236020 - L2 LINE L2 -589 2725 2460 2377 109 14 0 chr21 14671550 14671900 -30235670 + THE1A LTR MaLR 1 355 0 1315 304 102 43 chr21 14671900 14672104 -30235466 - L2 LINE L2 -854 2460 2180 243 300 81 19 chr21 14672827 14672987 -30234583 - MIR SINE MIR -46 216 47 200 299 0 13 chr21 14673000 14673077 -30234493 + (TA)n Simple_repeat Simple_repeat 2 77 0 21 0 0 0 chr21 14673354 14673375 -30234195 + AT_rich Low_complexity Low_complexity 1 21 0 1976 133 0 7 chr21 14674132 14674425 -30233145 - AluSx SINE Alu -21 291 1 2039 76 0 0 chr21 14674912 14675174 -30232396 + AluY SINE Alu 37 298 -13 396 0 0 0 chr21 14675327 14675371 -30232199 + (TG)n Simple_repeat Simple_repeat 2 45 0 5058 153 27 3 chr21 14676509 14677396 -30230174 - L1MA6 LINE L1 0 6300 5393 316 167 42 28 chr21 14677407 14677479 -30230091 + L1MCa LINE L1 1992 2064 -4362 310 132 44 59 chr21 14677489 14677557 -30230013 + L1MCa LINE L1 1998 2064 -4362 519 101 75 0 chr21 14677558 14677717 -30229853 + (TA)n Simple_repeat Simple_repeat 1 171 0 225 62 92 0 chr21 14677735 14677800 -30229770 + (TA)n Simple_repeat Simple_repeat 1 71 0 447 59 103 11 chr21 14677818 14678090 -30229480 + (TA)n Simple_repeat Simple_repeat 1 297 0 3049 148 34 40 chr21 14678095 14678771 -30228799 - L1MA6 LINE L1 -759 5387 4716 1617 145 62 6 chr21 14678790 14679115 -30228455 + L1MA5A LINE L1 5955 6297 0 296 138 0 0 chr21 14679120 14679178 -30228392 + L1MA4A LINE L1 6241 6298 -5 24 32 0 0 chr21 14679215 14679246 -30228324 + AT_rich Low_complexity Low_complexity 1 31 0 2876 9 0 0 chr21 14679374 14679690 -30227880 - AluYb8 SINE Alu -2 316 1 194 289 41 113 chr21 14680561 14680755 -30226815 + MIR3 SINE MIR 6 185 -23 204 188 0 0 chr21 14682319 14682351 -30225219 + polypyrimidine Low_complexity Low_complexity 1 32 0 225 209 0 0 chr21 14682437 14682480 -30225090 + L1MC4 LINE L1 6661 6703 -1339 270 211 42 11 chr21 14682480 14682575 -30224995 + (TA)n Simple_repeat Simple_repeat 2 99 0 1863 97 23 0 chr21 14683165 14683339 -30224231 - AluSg SINE Alu -7 303 120 192 40 0 0 chr21 14683339 14683364 -30224206 + (TTTG)n Simple_repeat Simple_repeat 4 28 0 1863 97 23 0 chr21 14683364 14683447 -30224123 - AluSg SINE Alu -190 120 40 541 302 62 6 chr21 14685848 14686027 -30221543 - MIR SINE MIR -44 218 30 23 54 0 0 chr21 14686224 14686261 -30221309 + AT_rich Low_complexity Low_complexity 1 37 0 2185 108 3 23 chr21 14686280 14686585 -30220985 + AluSx SINE Alu 2 300 -12 261 0 0 0 chr21 14687066 14687095 -30220475 + (A)n Simple_repeat Simple_repeat 1 29 0 2135 92 3 0 chr21 14687098 14687380 -30220190 + AluSq SINE Alu 1 283 -30 26 64 0 0 chr21 14689403 14689450 -30218120 + AT_rich Low_complexity Low_complexity 1 47 0 619 312 12 47 chr21 14689468 14689601 -30217969 + MIR SINE MIR 19 140 -122 2092 117 0 25 chr21 14689601 14689917 -30217653 + AluSx SINE Alu 1 308 -4 619 312 12 47 chr21 14689917 14690036 -30217534 + MIR SINE MIR 140 262 0 188 310 17 0 chr21 14690158 14690216 -30217354 + L2 LINE L2 1965 2023 -1291 680 310 113 43 chr21 14690377 14691022 -30216548 + L2 LINE L2 2635 3313 0 2244 105 0 3 chr21 14691130 14691424 -30216146 + AluSg SINE Alu 1 293 -17 196 347 0 0 chr21 14694385 14694457 -30213113 - MIR SINE MIR -86 176 105 258 282 0 0 chr21 14695603 14695706 -30211864 + (TA)n Simple_repeat Simple_repeat 1 103 0 239 79 0 26 chr21 14697448 14697486 -30210084 + HSMAR1 DNA Mariner 1 37 -1250 999 50 0 0 chr21 14697759 14697879 -30209691 - AluY SINE Alu -1 310 191 29 28 0 0 chr21 14699523 14699559 -30208011 + AT_rich Low_complexity Low_complexity 1 36 0 633 278 15 30 chr21 14701542 14701740 -30205830 - L2 LINE L2 0 3313 3119 1024 179 58 29 chr21 14701741 14701948 -30205622 + AluJb SINE Alu 2 214 -98 337 343 37 0 chr21 14701977 14702085 -30205485 - L2 LINE L2 -254 3059 2948 2225 117 7 0 chr21 14703789 14704098 -30203472 - AluSx SINE Alu -1 311 1 297 267 0 0 chr21 14704099 14704174 -30203396 - MER103 DNA DNA -79 87 13 22 0 0 0 chr21 14705205 14705227 -30202343 + AT_rich Low_complexity Low_complexity 1 22 0 23 0 0 0 chr21 14705342 14705365 -30202205 + AT_rich Low_complexity Low_complexity 1 23 0 1172 262 35 11 chr21 14705476 14705842 -30201728 - L1MC4a LINE L1 -7 7801 7427 2508 179 71 54 chr21 14706156 14706459 -30201111 - MLT2B3 LTR ERVL -8 546 229 3381 127 39 6 chr21 14706459 14706995 -30200575 - MER41C LTR ERV1 0 554 1 2508 179 71 54 chr21 14706995 14707228 -30200342 - MLT2B3 LTR ERVL -325 229 1 2510 74 0 0 chr21 14708382 14708692 -30198878 - AluY SINE Alu -1 310 1 899 126 0 20 chr21 14709790 14709941 -30197629 - LTR7 LTR ERV1 0 450 303 833 135 30 31 chr21 14710220 14710388 -30197182 - LTR7 LTR ERV1 -232 218 1 3416 133 6 9 chr21 14710388 14710931 -30196639 - HERVH LTR ERV1 0 7713 7173 26 0 0 0 chr21 14710943 14710969 -30196601 + AT_rich Low_complexity Low_complexity 1 26 0 950 131 7 0 chr21 14710985 14711130 -30196440 - HERVH LTR ERV1 -765 6948 6803 252 0 0 0 chr21 14711132 14711160 -30196410 + (TTA)n Simple_repeat Simple_repeat 3 30 0 6678 39 4 0 chr21 14711160 14711964 -30195606 - L1PA3 LINE L1 -18 6137 5331 1696 206 3 0 chr21 14711964 14712290 -30195280 - HERVH LTR ERV1 -898 6815 6489 6773 216 19 50 chr21 14712290 14714085 -30193485 - HERVH LTR ERV1 -3184 4529 2790 * 8535 144 7 38 chr21 14714059 14715556 -30192014 - HERVH LTR ERV1 -5275 2438 989 896 191 64 20 chr21 14715566 14715770 -30191800 - LTR7 LTR ERV1 0 450 238 882 123 10 20 chr21 14716199 14716367 -30191203 - LTR7 LTR ERV1 -232 218 1 1911 163 31 98 chr21 14717987 14718265 -30189305 - MER21B LTR ERV1 -49 814 519 2217 105 0 3 chr21 14718265 14718561 -30189009 - AluSg SINE Alu -13 297 3 2079 124 3 7 chr21 14718567 14718874 -30188696 - AluSq SINE Alu -7 306 1 1911 163 31 98 chr21 14718874 14719036 -30188534 - MER21B LTR ERV1 -349 514 397 813 188 74 0 chr21 14719036 14719185 -30188385 + AluSg/x SINE Alu 137 296 -16 1641 231 94 22 chr21 14719208 14719571 -30187999 - MER21B LTR ERV1 -460 403 15 14343 150 49 16 chr21 14719576 14721169 -30186401 - Tigger2 DNA MER2_type -4 2714 998 2108 102 44 0 chr21 14721169 14721462 -30186108 - AluSx SINE Alu -6 306 1 14343 150 49 16 chr21 14721462 14722495 -30185075 - Tigger2 DNA MER2_type -1720 998 1 192 40 0 0 chr21 14723338 14723363 -30184207 + (CA)n Simple_repeat Simple_repeat 2 26 0 877 239 4 31 chr21 14723497 14723618 -30183952 + AluJo SINE Alu 1 115 -197 216 0 0 0 chr21 14723618 14723642 -30183928 + (TAAA)n Simple_repeat Simple_repeat 2 25 0 877 239 4 31 chr21 14723642 14723746 -30183824 + AluJo SINE Alu 115 220 -92 636 122 0 14 chr21 14723746 14723877 -30183693 + AluSg/x SINE Alu 84 291 -21 441 335 6 12 chr21 14724755 14724919 -30182651 + MIR SINE MIR 68 230 -32 547 205 5 32 chr21 14725364 14725549 -30182021 + GA-rich Low_complexity Low_complexity 1 180 0 2388 241 67 51 chr21 14727066 14727660 -30179910 - L1MC3 LINE L1 -10 7985 7402 230 130 0 0 chr21 14727660 14727706 -30179864 - LTR66 LTR ERVL -171 439 394 2388 241 67 51 chr21 14727706 14727764 -30179806 - L1MC3 LINE L1 -593 7402 7346 17791 44 6 0 chr21 14727764 14730817 -30176753 - L1PA5 LINE L1 -8 6146 3146 2388 241 67 51 chr21 14730817 14730975 -30176595 - L1MC3 LINE L1 -649 7346 7192 288 0 0 0 chr21 14730975 14731007 -30176563 + (GA)n Simple_repeat Simple_repeat 2 33 0 1889 146 7 26 chr21 14731007 14731316 -30176254 + AluSq SINE Alu 3 305 -8 2388 241 67 51 chr21 14731316 14731748 -30175822 - L1MC3 LINE L1 -802 7193 6675 * 2776 271 83 4 chr21 14731747 14732761 -30174809 - L1M4 LINE L1 -1620 4526 3433 21 36 0 0 chr21 14732790 14732818 -30174752 + AT_rich Low_complexity Low_complexity 1 28 0 389 163 163 31 chr21 14734061 14734159 -30173411 - MLT1E1 LTR MaLR -543 111 1 1969 164 51 0 chr21 14734928 14735299 -30172271 - MLT1B LTR MaLR 0 390 1 276 30 0 0 chr21 14735426 14735459 -30172111 + (TA)n Simple_repeat Simple_repeat 2 34 0 183 80 0 0 chr21 14738165 14738190 -30169380 + (T)n Simple_repeat Simple_repeat 1 25 0 26 50 0 0 chr21 14739731 14739771 -30167799 + AT_rich Low_complexity Low_complexity 1 40 0 23 33 0 0 chr21 14740260 14740290 -30167280 + AT_rich Low_complexity Low_complexity 1 30 0 701 184 7 21 chr21 14743092 14743233 -30164337 - FAM SINE Alu -6 43 1 330 248 150 7 chr21 14745029 14745182 -30162388 - MIR SINE MIR -37 225 51 221 351 71 39 chr21 14746094 14746248 -30161322 - MIR3 SINE MIR -18 190 32 660 247 135 66 chr21 14746621 14746998 -30160572 - L1ME3 LINE L1 -30 6132 5730 2487 68 0 0 chr21 14747492 14747803 -30159767 - AluY SINE Alu 0 311 1 27 29 0 0 chr21 14748527 14748561 -30159009 + AT_rich Low_complexity Low_complexity 1 34 0 28 48 0 0 chr21 14749804 14749846 -30157724 + AT_rich Low_complexity Low_complexity 1 42 0 268 232 0 0 chr21 14751084 14751140 -30156430 + L2 LINE L2 3258 3313 0 329 298 105 18 chr21 14752246 14752417 -30155153 + MIR SINE MIR 18 203 -59 22 0 0 0 chr21 14753288 14753310 -30154260 + AT_rich Low_complexity Low_complexity 1 22 0 213 214 0 0 chr21 14753629 14753671 -30153899 + A-rich Low_complexity Low_complexity 1 42 0 205 364 0 0 chr21 14754453 14754519 -30153051 + MIR SINE MIR 57 122 -140 445 219 248 12 chr21 14754523 14754765 -30152805 - MER46C DNA MER2_type -21 317 19 219 300 0 0 chr21 14754788 14754848 -30152722 + MIR SINE MIR 153 212 -50 1955 161 0 3 chr21 14754857 14755162 -30152408 + AluSx SINE Alu 7 310 -2 2174 122 0 0 chr21 14756166 14756469 -30151101 - AluSc SINE Alu -6 303 1 1677 177 7 0 chr21 14757518 14757789 -30149781 + AluJb SINE Alu 1 273 -39 219 36 0 0 chr21 14758216 14758244 -30149326 + (TTTA)n Simple_repeat Simple_repeat 4 31 0 2126 127 0 7 chr21 14758319 14758619 -30148951 - AluSx SINE Alu -11 301 4 22 35 0 0 chr21 14758657 14758686 -30148884 + AT_rich Low_complexity Low_complexity 1 29 0 2297 100 0 6 chr21 14759099 14759410 -30148160 + AluSg SINE Alu 1 309 -1 446 361 58 45 chr21 14759809 14760205 -30147365 + L2 LINE L2 2862 3262 -10 297 302 39 77 chr21 14760486 14760668 -30146902 - MIR3 SINE MIR -3 205 31 1513 202 137 41 chr21 14760711 14761034 -30146536 - L1MD3 LINE L1 -14 7981 7690 6175 31 1 3 chr21 14761034 14761775 -30145795 - L1PA5 LINE L1 -1 6153 5414 1513 202 137 41 chr21 14761775 14762397 -30145173 - L1MD3 LINE L1 -305 7690 6759 2301 238 62 29 chr21 14762397 14763167 -30144403 - L1MC4a LINE L1 -1238 6570 5775 5766 161 58 8 chr21 14763170 14764260 -30143310 + Tigger3b DNA MER2_type 1 1144 -87 583 156 56 56 chr21 14764344 14764504 -30143066 + Tigger3b DNA MER2_type 1073 1232 0 423 261 266 0 chr21 14764506 14764705 -30142865 - L1MC4a LINE L1 -2037 5771 5520 625 280 72 84 chr21 14764803 14764949 -30142621 - L1MC4a LINE L1 -860 5286 5140 1741 119 103 0 chr21 14764949 14765202 -30142368 + AluSg SINE Alu 1 279 -31 625 280 72 84 chr21 14765202 14766606 -30140964 - L1MC4a LINE L1 -1006 5140 4001 225 0 0 0 chr21 14766606 14766631 -30140939 + (CA)n Simple_repeat Simple_repeat 2 26 0 625 280 72 84 chr21 14766631 14767126 -30140444 - L1MC4a LINE L1 -2145 4001 3502 367 282 71 61 chr21 14767295 14767575 -30139995 - L1MC4a LINE L1 -2812 3334 3052 223 241 13 63 chr21 14767646 14767725 -30139845 - MER5A DNA MER1_type -45 144 70 182 260 55 41 chr21 14770109 14770182 -30137388 - MIR SINE MIR -106 156 83 298 350 17 17 chr21 14771278 14771395 -30136175 - MIR SINE MIR -67 141 25 309 118 0 0 chr21 14771916 14771967 -30135603 + (T)n Simple_repeat Simple_repeat 1 51 0 222 118 0 0 chr21 14772101 14772135 -30135435 + (TG)n Simple_repeat Simple_repeat 1 34 0 22 0 0 0 chr21 14774863 14774885 -30132685 + AT_rich Low_complexity Low_complexity 1 22 0 264 325 12 0 chr21 14775671 14775751 -30131819 + MIR3 SINE MIR 98 178 -30 247 206 0 22 chr21 14776383 14776475 -30131095 + (TA)n Simple_repeat Simple_repeat 2 91 0 190 295 116 45 chr21 14777130 14777242 -30130328 - L2 LINE L2 -10 3303 3184 2191 130 22 19 chr21 14777664 14778026 -30129544 - THE1B LTR MaLR -1 363 1 23 0 0 0 chr21 14778267 14778290 -30129280 + AT_rich Low_complexity Low_complexity 1 23 0 1713 169 158 11 chr21 14778827 14779200 -30128370 + MSTA LTR MaLR 1 428 0 197 328 0 0 chr21 14779484 14779545 -30128025 - L3b LINE CR1 -220 1363 1303 414 39 0 0 chr21 14780245 14780297 -30127273 + (CA)n Simple_repeat Simple_repeat 1 52 0 1975 157 19 32 chr21 14780700 14781069 -30126501 + THE1B LTR MaLR 1 364 0 11364 90 17 1 chr21 14781069 14782624 -30124946 + THE1B-int LTR MaLR 1 1580 0 2114 141 30 28 chr21 14782624 14782987 -30124583 + THE1B LTR MaLR 1 364 0 238 342 40 33 chr21 14783316 14783468 -30124102 - MER5A DNA MER1_type -21 168 16 209 108 27 0 chr21 14784142 14784179 -30123391 + (TATG)n Simple_repeat Simple_repeat 3 40 0 290 362 120 27 chr21 14784184 14784918 -30122652 + L2 LINE L2 1870 2671 -643 27 73 0 0 chr21 14785034 14785089 -30122481 + AT_rich Low_complexity Low_complexity 1 55 0 186 363 52 36 chr21 14785214 14785407 -30122163 + L2 LINE L2 2807 3002 -270 1721 172 3 34 chr21 14786282 14786602 -30120968 + AluJb SINE Alu 1 310 -2 241 390 83 50 chr21 14787407 14787684 -30119886 - L2 LINE L2 -19 3253 2968 330 272 162 47 chr21 14787853 14788044 -30119526 - L2 LINE L2 -106 3207 2995 246 315 45 36 chr21 14788587 14788698 -30118872 - L2 LINE L2 -1 3312 3201 39 60 0 0 chr21 14789978 14790045 -30117525 + AT_rich Low_complexity Low_complexity 1 67 0 315 251 45 36 chr21 14790429 14790575 -30116995 + MIR SINE MIR 6 151 -65 1591 142 31 3 chr21 14790703 14790991 -30116579 - L1MA3 LINE L1 0 6305 6010 760 203 0 0 chr21 14791041 14791169 -30116401 - FLAM_C SINE Alu -11 132 5 246 286 135 8 chr21 14791397 14791530 -30116040 + L2 LINE L2 3085 3234 -79 24 0 0 0 chr21 14791543 14791567 -30116003 + AT_rich Low_complexity Low_complexity 1 24 0 21 0 0 0 chr21 14792500 14792521 -30115049 + AT_rich Low_complexity Low_complexity 1 21 0 1398 30 0 12 chr21 14793583 14793751 -30113819 - AluY SINE Alu -7 304 139 21 0 0 0 chr21 14794682 14794703 -30112867 + AT_rich Low_complexity Low_complexity 1 21 0 8943 145 24 20 chr21 14795046 14797770 -30109800 - L1MA1 LINE L1 -6 6296 3566 4000 105 30 49 chr21 14797770 14798466 -30109104 - L1PB1 LINE L1 0 6151 5469 255 239 28 0 chr21 14798466 14798537 -30109033 - L1 LINE L1 -1525 6040 5968 * 12490 202 14 12 chr21 14798518 14799587 -30107983 - L1P5 LINE L1 -672 5479 4414 702 35 0 0 chr21 14799587 14799672 -30107898 + (TTTTA)n Simple_repeat Simple_repeat 3 87 0 12490 202 14 12 chr21 14799672 14799691 -30107879 - L1P5 LINE L1 -1737 4414 4397 2256 71 4 0 chr21 14799691 14800008 -30107562 - AluY SINE Alu 0 318 1 12490 202 14 12 chr21 14800008 14801946 -30105624 - L1P5 LINE L1 -1754 4397 2444 238 69 86 0 chr21 14801967 14802025 -30105545 + (TA)n Simple_repeat Simple_repeat 1 63 0 482 209 6 49 chr21 14802031 14802194 -30105376 - L1 LINE L1 -3653 3912 3757 272 85 0 0 chr21 14802222 14802269 -30105301 + LTR66 LTR ERVL 393 439 -171 404 121 76 0 chr21 14802286 14802418 -30105152 + (TA)n Simple_repeat Simple_repeat 2 143 0 226 122 0 61 chr21 14802423 14802472 -30105098 + L1MC4 LINE L1 6658 6703 -1339 2853 123 94 6 chr21 14802491 14803167 -30104403 - L1PBa LINE L1 -3689 3876 3141 5556 142 38 8 chr21 14803181 14804114 -30103456 - L1PBa LINE L1 -5049 2516 1556 282 303 244 17 chr21 14804314 14804433 -30103137 + MIR3 SINE MIR 42 187 -21 22 0 0 0 chr21 14804586 14804608 -30102962 + AT_rich Low_complexity Low_complexity 1 22 0 1787 154 27 10 chr21 14804775 14805068 -30102502 - AluSx SINE Alu -10 302 5 2069 123 3 16 chr21 14806824 14807133 -30100437 - AluSg SINE Alu -5 305 1 285 320 51 27 chr21 14807515 14807771 -30099799 - L1ME4a LINE L1 -104 6017 5756 186 313 0 16 chr21 14808024 14808088 -30099482 + L2 LINE L2 2997 3059 -213 189 333 53 13 chr21 14808181 14808256 -30099314 + L2 LINE L2 3125 3202 -70 2130 121 0 3 chr21 14808326 14808623 -30098947 + AluSx SINE Alu 1 296 -16 180 0 0 0 chr21 14809579 14809599 -30097971 + (CAA)n Simple_repeat Simple_repeat 2 21 0 311 133 0 17 chr21 14809912 14809972 -30097598 + (GGAA)n Simple_repeat Simple_repeat 4 62 0 1130 244 42 53 chr21 14809983 14810344 -30097226 + MLT1A2 LTR MaLR 3 359 -15 512 269 66 50 chr21 14810361 14810603 -30096967 - L1MC4 LINE L1 -285 7757 7512 191 323 0 0 chr21 14810636 14810698 -30096872 + L2 LINE L2 3248 3309 -4 607 284 93 4 chr21 14810939 14811196 -30096374 + MER5C DNA MER1_type 1 280 -44 194 190 0 35 chr21 14811374 14811432 -30096138 + (TATG)n Simple_repeat Simple_repeat 1 56 0 227 333 10 10 chr21 14811472 14811571 -30095999 + (TATATG)n Simple_repeat Simple_repeat 6 104 0 196 118 59 0 chr21 14811613 14811647 -30095923 - L2 LINE L2 -956 2358 2323 2081 107 7 20 chr21 14811663 14811963 -30095607 + AluSg SINE Alu 1 296 -14 180 359 0 0 chr21 14813294 14813347 -30094223 - L2 LINE L2 -23 3290 3238 21 0 0 0 chr21 14814354 14814375 -30093195 + AT_rich Low_complexity Low_complexity 1 21 0 21 71 0 0 chr21 14815359 14815401 -30092169 + AT_rich Low_complexity Low_complexity 1 42 0 2261 213 14 24 chr21 14815608 14816162 -30091408 - L1PB1 LINE L1 -762 5384 4836 * 5132 100 20 18 chr21 14816157 14816944 -30090626 + L1PB1 LINE L1 5361 6149 -2 183 100 0 0 chr21 14817328 14817358 -30090212 + (CCAA)n Simple_repeat Simple_repeat 2 31 0 988 186 37 11 chr21 14818541 14818729 -30088841 - MSTD LTR MaLR 0 396 204 23 33 0 0 chr21 14820547 14820577 -30086993 + AT_rich Low_complexity Low_complexity 1 30 0 303 93 0 0 chr21 14820867 14820910 -30086660 + (CAAAA)n Simple_repeat Simple_repeat 3 45 0 2176 112 0 7 chr21 14821140 14821444 -30086126 + AluSx SINE Alu 11 312 0 180 0 0 0 chr21 14823535 14823555 -30084015 + (TAAA)n Simple_repeat Simple_repeat 2 21 0 2091 147 0 0 chr21 14826025 14826331 -30081239 - AluSx SINE Alu -4 308 3 39 50 0 0 chr21 14826453 14826513 -30081057 + AT_rich Low_complexity Low_complexity 1 60 0 270 95 0 0 chr21 14827129 14827171 -30080399 + (TG)n Simple_repeat Simple_repeat 1 42 0 296 282 14 0 chr21 14827410 14827481 -30080089 + tRNA-Ile-ATT tRNA tRNA 1 72 -5 21 0 0 0 chr21 14828327 14828348 -30079222 + AT_rich Low_complexity Low_complexity 1 21 0 6761 62 10 0 chr21 14829152 14830035 -30077535 - L1PA6 LINE L1 0 6154 5263 1133 151 0 16 chr21 14830378 14830564 -30077006 - AluJb SINE Alu -45 267 85 193 282 71 24 chr21 14831065 14831150 -30076420 + MIR SINE MIR 116 204 -58 378 317 24 30 chr21 14831348 14831512 -30076058 - MIR SINE MIR -16 246 84 5467 181 38 29 chr21 14831709 14833952 -30073618 - L1PA16 LINE L1 0 6166 3916 207 167 0 0 chr21 14834878 14834920 -30072650 + (CATA)n Simple_repeat Simple_repeat 2 43 0 525 262 0 8 chr21 14834981 14835103 -30072467 - FLAM_A SINE Alu -12 121 1 234 222 30 40 chr21 14835944 14836043 -30071527 + A-rich Low_complexity Low_complexity 5 102 0 260 151 55 0 chr21 14836326 14836399 -30071171 + (TA)n Simple_repeat Simple_repeat 1 77 0 27 0 0 0 chr21 14836399 14836426 -30071144 + AT_rich Low_complexity Low_complexity 1 27 0 653 192 51 0 chr21 14836455 14836611 -30070959 - L1 LINE L1 -1710 4436 4273 22 36 0 55 chr21 14838152 14838207 -30069363 + AT_rich Low_complexity Low_complexity 1 52 0 24 53 0 0 chr21 14838445 14838483 -30069087 + AT_rich Low_complexity Low_complexity 1 38 0 369 0 0 0 chr21 14838734 14838775 -30068795 + (TG)n Simple_repeat Simple_repeat 2 42 0 2398 67 0 0 chr21 14838775 14839061 -30068509 - AluY SINE Alu -22 289 1 544 28 99 0 chr21 14839206 14839277 -30068293 + L1PA10 LINE L1 5801 5878 -290 1848 136 0 0 chr21 14839541 14839806 -30067764 - AluSq SINE Alu -48 265 1 1206 251 74 3 chr21 14840246 14840557 -30067013 + MER58B DNA MER1_type 7 339 -2 3496 195 76 59 chr21 14840757 14841795 -30065775 - L1MD1 LINE L1 -5 6631 5577 1280 231 67 6 chr21 14841798 14842158 -30065412 - MER34B LTR ERV1 0 565 184 309 259 37 9 chr21 14842194 14842315 -30065255 - MER34 LTR ERV1 -429 137 1 727 238 31 1 chr21 14842315 14842537 -30065033 - L1MD1 LINE L1 -976 5564 5336 240 149 0 0 chr21 14842556 14842603 -30064967 + (TC)n Simple_repeat Simple_repeat 1 47 0 583 222 0 121 chr21 14842604 14842678 -30064892 - L1MD1 LINE L1 -1208 5332 5251 2156 96 0 4 chr21 14842678 14842959 -30064611 + AluSx SINE Alu 17 296 -16 583 222 0 121 chr21 14842959 14843091 -30064479 - L1MD1 LINE L1 -1289 5251 5151 25 51 0 0 chr21 14843113 14843152 -30064418 + AT_rich Low_complexity Low_complexity 1 39 0 889 279 59 3 chr21 14843187 14843545 -30064025 - L1MD1 LINE L1 -1406 5134 4757 * 1214 231 0 38 chr21 14843542 14843858 -30063712 - L1MD1 LINE L1 -2057 4483 4180 8775 101 26 8 chr21 14843860 14845052 -30062518 - HSMAR1 DNA Mariner -1 1286 70 2391 73 0 25 chr21 14845052 14845369 -30062201 - AluY SINE Alu -2 309 1 8775 101 26 8 chr21 14845369 14845410 -30062160 - HSMAR1 DNA Mariner -1217 70 31 9193 241 66 44 chr21 14845425 14845626 -30061944 - L1MD1 LINE L1 -2365 4175 3980 2294 108 0 0 chr21 14845626 14845933 -30061637 + AluSq SINE Alu 1 307 -6 9193 241 66 44 chr21 14845933 14846023 -30061547 - L1MD1 LINE L1 -2560 3980 3893 1784 172 0 23 chr21 14846023 14846331 -30061239 - AluJo SINE Alu -11 301 1 9193 241 66 44 chr21 14846331 14847275 -30060295 - L1MD1 LINE L1 -2647 3893 2972 2336 88 7 0 chr21 14847275 14847583 -30059987 + AluSg SINE Alu 1 310 0 9193 241 66 44 chr21 14847583 14850400 -30057170 - L1MD1 LINE L1 -3568 2972 3 362 227 23 11 chr21 14850696 14850784 -30056786 + L2 LINE L2 3225 3313 0 256 250 0 0 chr21 14852784 14852864 -30054706 + T-rich Low_complexity Low_complexity 1 80 0 243 0 0 0 chr21 14853287 14853314 -30054256 + (A)n Simple_repeat Simple_repeat 1 27 0 218 104 0 42 chr21 14853328 14853376 -30054194 + (CAAAAA)n Simple_repeat Simple_repeat 1 46 0 426 274 131 11 chr21 14858143 14858318 -30049252 + L2 LINE L2 3118 3313 0 24 53 0 0 chr21 14858828 14858866 -30048704 + AT_rich Low_complexity Low_complexity 1 38 0 2073 126 3 3 chr21 14859909 14860210 -30047360 + AluSx SINE Alu 3 303 -9 219 139 0 0 chr21 14860797 14860833 -30046737 + (GGGA)n Simple_repeat Simple_repeat 1 36 0 4740 6 0 0 chr21 14862217 14862751 -30044819 - L1HS LINE L1 0 6155 5622 296 298 83 0 chr21 14863082 14863203 -30044367 - MIR3 SINE MIR -28 180 50 2048 115 10 0 chr21 14863874 14864169 -30043401 + AluSx SINE Alu 8 305 -7 898 209 17 0 chr21 14865650 14865827 -30041743 + MER3 DNA MER1_type 30 209 0 207 224 17 17 chr21 14865976 14866034 -30041536 + T-rich Low_complexity Low_complexity 2 59 0 2126 113 0 0 chr21 14866313 14866621 -30040949 - AluSg SINE Alu 0 308 1 32 43 0 0 chr21 14866879 14866925 -30040645 + AT_rich Low_complexity Low_complexity 1 46 0 703 227 78 0 chr21 14867079 14867233 -30040337 + FRAM SINE Alu 1 165 -11 22 56 0 0 chr21 14867418 14867454 -30040116 + AT_rich Low_complexity Low_complexity 1 36 0 2112 163 52 45 chr21 14867481 14867696 -30039874 - Tigger2 DNA MER2_type 0 2718 2506 2193 96 3 26 chr21 14867696 14867999 -30039571 + AluSp SINE Alu 1 296 -17 2112 163 52 45 chr21 14867999 14868225 -30039345 - Tigger2 DNA MER2_type -212 2506 2274 424 188 0 0 chr21 14868216 14868285 -30039285 - Tigger2 DNA MER2_type -2649 69 1 * 304 321 100 38 chr21 14869368 14869608 -30037962 + MIR SINE MIR 7 261 -1 207 0 0 0 chr21 14869721 14869744 -30037826 + (TTTTTG)n Simple_repeat Simple_repeat 2 24 0 204 264 132 0 chr21 14869990 14870043 -30037527 + MIR SINE MIR 94 153 -109 21 36 0 0 chr21 14870401 14870429 -30037141 + AT_rich Low_complexity Low_complexity 1 28 0 21 0 0 0 chr21 14870580 14870601 -30036969 + AT_rich Low_complexity Low_complexity 1 21 0 2248 103 3 0 chr21 14871077 14871377 -30036193 - AluSx SINE Alu -11 301 1 519 216 132 12 chr21 14871626 14871793 -30035777 + MER53 DNA DNA 1 187 -2 31 26 0 0 chr21 14871914 14871952 -30035618 + AT_rich Low_complexity Low_complexity 1 38 0 2303 93 0 3 chr21 14872876 14873188 -30034382 + AluSq SINE Alu 1 311 -2 1487 74 15 0 chr21 14873756 14873958 -30033612 - AluY SINE Alu -10 301 97 218 330 99 73 chr21 14874408 14874531 -30033039 + MIR SINE MIR 23 141 -121 2648 39 0 0 chr21 14874531 14874841 -30032729 + AluY SINE Alu 2 311 0 218 330 99 73 chr21 14874841 14874950 -30032620 + MIR SINE MIR 141 261 -1 214 379 23 0 chr21 14875180 14875267 -30032303 - MIR3 SINE MIR -7 201 113 246 62 0 0 chr21 14875713 14875745 -30031825 + (CTTA)n Simple_repeat Simple_repeat 2 33 0 1984 161 0 0 chr21 14876093 14876397 -30031173 + AluSx SINE Alu 5 308 -4 293 138 155 0 chr21 14876402 14876460 -30031110 + MIR3 SINE MIR 114 180 -28 1071 189 0 11 chr21 14876467 14876657 -30030913 + AluSg/x SINE Alu 112 299 -13 438 328 159 0 chr21 14876957 14877152 -30030418 + MIR SINE MIR 31 256 -6 294 326 41 20 chr21 14878876 14878974 -30028596 - MIR SINE MIR -150 112 13 208 301 204 0 chr21 14880037 14880150 -30027420 - MIR3 SINE MIR -63 145 10 * 409 314 115 13 chr21 14880137 14880293 -30027277 - L2 LINE L2 0 3272 3101 2047 96 58 0 chr21 14881213 14881504 -30026066 - AluSx SINE Alu -4 308 1 1978 113 7 0 chr21 14881939 14882245 -30025325 + AluSq SINE Alu 2 309 0 778 167 0 8 chr21 14883296 14883428 -30024142 + FLAM_C SINE Alu 1 131 -2 24 32 0 0 chr21 14883967 14883998 -30023572 + AT_rich Low_complexity Low_complexity 1 31 0 815 107 21 43 chr21 14888618 14888758 -30018812 + L1MA3 LINE L1 6169 6305 0 295 369 92 0 chr21 14889614 14889744 -30017826 - MIR3 SINE MIR -65 143 2 2100 100 0 0 chr21 14890552 14890833 -30016737 - AluY SINE Alu -30 281 1 280 334 93 29 chr21 14891169 14891318 -30016252 + MIR SINE MIR 10 163 -65 24 0 0 0 chr21 14892563 14892587 -30014983 + AT_rich Low_complexity Low_complexity 1 24 0 207 69 0 0 chr21 14892740 14892769 -30014801 + (TC)n Simple_repeat Simple_repeat 2 30 0 288 70 0 0 chr21 14892789 14892832 -30014738 + (CA)n Simple_repeat Simple_repeat 1 43 0 1979 86 6 60 chr21 14893083 14893434 -30014136 + AluSg SINE Alu 1 310 0 1984 94 43 0 chr21 14893454 14893730 -30013840 + AluSc SINE Alu 1 288 -21 22 56 0 0 chr21 14893915 14893951 -30013619 + AT_rich Low_complexity Low_complexity 1 36 0 24 53 0 0 chr21 14894423 14894461 -30013109 + AT_rich Low_complexity Low_complexity 1 38 0 324 165 76 0 chr21 14895144 14895302 -30012268 + (TA)n Simple_repeat Simple_repeat 1 170 0 246 182 78 0 chr21 14895331 14895485 -30012085 + (TA)n Simple_repeat Simple_repeat 1 166 0 21 0 0 0 chr21 14899352 14899373 -30008197 + AT_rich Low_complexity Low_complexity 1 21 0 2180 122 3 0 chr21 14900048 14900351 -30007219 - AluSx SINE Alu -8 304 1 589 337 16 5 chr21 14900554 14900744 -30006826 - MIR3 SINE MIR -12 196 5 1993 124 37 0 chr21 14901047 14901346 -30006224 - AluSx SINE Alu -2 310 1 330 45 0 0 chr21 14902145 14902189 -30005381 + (CA)n Simple_repeat Simple_repeat 2 45 0 2118 111 3 3 chr21 14902242 14902548 -30005022 + AluSg SINE Alu 1 306 -4 213 65 0 0 chr21 14902626 14902657 -30004913 + (A)n Simple_repeat Simple_repeat 1 31 0 644 237 98 21 chr21 14903146 14903340 -30004230 + MER3 DNA MER1_type 1 209 0 274 283 20 10 chr21 14904697 14904796 -30002774 + CT-rich Low_complexity Low_complexity 1 100 0 31 44 0 0 chr21 14905544 14905589 -30001981 + AT_rich Low_complexity Low_complexity 1 45 0 2484 25 0 0 chr21 14913548 14913830 -29993740 + AluY SINE Alu 28 309 -2 393 267 7 82 chr21 14913927 14914062 -29993508 + MLT1K LTR MaLR 273 397 -191 430 260 60 100 chr21 14914188 14914457 -29993113 - MLT1K LTR MaLR -162 426 169 185 94 31 0 chr21 14915086 14915118 -29992452 + (CATATA)n Simple_repeat Simple_repeat 3 35 0 1848 89 4 0 chr21 14916994 14917242 -29990328 + AluSp SINE Alu 65 313 0 2132 99 13 0 chr21 14917444 14917748 -29989822 - AluY SINE Alu -3 308 1 288 326 70 41 chr21 14917752 14917924 -29989646 - L2 LINE L2 -194 3078 2902 274 239 97 69 chr21 14918176 14918316 -29989254 - MER5A DNA MER1_type -26 163 7 372 298 123 35 chr21 14918972 14919200 -29988370 - MLT1J LTR MaLR -255 256 9 21 36 0 0 chr21 14919611 14919639 -29987931 + AT_rich Low_complexity Low_complexity 1 28 0 228 359 8 8 chr21 14920011 14920128 -29987442 - L2 LINE L2 -713 2601 2485 2003 101 26 0 chr21 14921213 14921481 -29986089 + AluSx SINE Alu 1 275 -37 237 132 0 0 chr21 14924722 14924760 -29982810 + (TG)n Simple_repeat Simple_repeat 1 38 0 207 259 62 12 chr21 14925010 14925091 -29982479 + L2 LINE L2 3188 3272 0 739 272 185 38 chr21 14925221 14925879 -29981691 + L2 LINE L2 2576 3313 0 1114 201 5 19 chr21 14926178 14926392 -29981178 - MER58A DNA MER1_type -13 211 1 563 197 230 0 chr21 14926677 14926842 -29980728 + MER63 DNA MER1_type 1 1688 0 565 179 0 128 chr21 14928113 14928308 -29979262 - L1MC5 LINE L1 -19 7942 7773 499 251 108 35 chr21 14928306 14928565 -29979005 - L1MC5 LINE L1 -426 7535 7258 * 200 111 28 0 chr21 14928566 14928602 -29978968 + A-rich Low_complexity Low_complexity 3 39 0 1917 143 4 0 chr21 14930082 14930396 -29977174 + AluSx SINE Alu 3 317 0 2691 172 27 19 chr21 14930522 14931085 -29976485 - L1MB1 LINE L1 -1 6167 5601 857 139 14 0 chr21 14931085 14931220 -29976350 - L1PB3 LINE L1 -2 6152 6007 21 0 0 0 chr21 14931222 14931243 -29976327 + AT_rich Low_complexity Low_complexity 1 21 0 1973 106 3 46 chr21 14931246 14931549 -29976021 - AluSq SINE Alu -23 290 1 1775 186 25 0 chr21 14931549 14931910 -29975660 - L1MB1 LINE L1 -727 5607 5238 2862 14 0 0 chr21 14932137 14932483 -29975087 - L1PA3 LINE L1 -831 5315 4970 7065 29 0 0 chr21 14932483 14933311 -29974259 + L1PA3 LINE L1 5319 6152 -3 980 61 0 0 chr21 14934097 14934212 -29973358 - AluY SINE Alu -175 136 22 1266 114 6 0 chr21 14934232 14934408 -29973162 - AluSg/x SINE Alu -10 302 126 2444 69 0 0 chr21 14934408 14934713 -29972857 - AluY SINE Alu -6 305 1 423 297 77 54 chr21 14934713 14934935 -29972635 - L3 LINE CR1 -3 1574 1348 650 284 112 41 chr21 14935181 14935431 -29972139 - MER77 LTR ERV1 -12 593 354 1578 195 89 22 chr21 14935431 14935800 -29971770 - MSTD LTR MaLR -2 394 1 650 284 112 41 chr21 14935800 14935885 -29971685 - MER77 LTR ERV1 -251 354 277 354 333 142 0 chr21 14936260 14936464 -29971106 + MIR SINE MIR 30 262 0 209 265 137 49 chr21 14936571 14936673 -29970897 - L2 LINE L2 0 3272 3162 1114 247 77 50 chr21 14937238 14937695 -29969875 - L2 LINE L2 -4 3309 2841 2159 41 0 11 chr21 14937734 14938001 -29969569 - AluY SINE Alu -15 296 33 445 206 32 13 chr21 14938056 14938223 -29969347 + MER33 DNA MER1_type 1 214 -110 3249 186 63 27 chr21 14938237 14939013 -29968557 - L1MD2 LINE L1 0 6359 5556 288 140 0 18 chr21 14939013 14939070 -29968500 + MER33 DNA MER1_type 234 289 -35 703 287 25 5 chr21 14939264 14939466 -29968104 + MIR SINE MIR 1 206 -56 2508 111 5 19 chr21 14939574 14939943 -29967627 - THE1B LTR MaLR 0 364 1 353 309 16 8 chr21 14939944 14940067 -29967503 + L2 LINE L2 3165 3288 -25 216 0 0 0 chr21 14940075 14940099 -29967471 + (TGAA)n Simple_repeat Simple_repeat 2 25 0 342 67 0 0 chr21 14940689 14940734 -29966836 + (CA)n Simple_repeat Simple_repeat 2 46 0 623 310 65 4 chr21 14941366 14941598 -29965972 - MIR SINE MIR -8 254 9 25 51 0 0 chr21 14942033 14942072 -29965498 + AT_rich Low_complexity Low_complexity 1 39 0 23 0 0 0 chr21 14943085 14943108 -29964462 + AT_rich Low_complexity Low_complexity 1 23 0 762 225 39 0 chr21 14943824 14944006 -29963564 - MER5A DNA MER1_type 0 189 1 844 164 0 0 chr21 14944119 14944247 -29963323 - FLAM_C SINE Alu -4 129 2 2152 120 0 0 chr21 14944346 14944647 -29962923 + AluSg SINE Alu 1 301 -9 2387 80 0 0 chr21 14945117 14945418 -29962152 - AluSg SINE Alu -9 301 1 586 275 6 34 chr21 14945520 14945698 -29961872 - MER5B DNA MER1_type -5 173 1 2054 117 17 0 chr21 14945784 14946083 -29961487 + AluSp SINE Alu 1 304 -9 199 258 15 30 chr21 14946307 14946373 -29961197 - L2 LINE L2 -16 3256 3192 21 0 0 0 chr21 14946700 14946721 -29960849 + AT_rich Low_complexity Low_complexity 1 21 0 2715 70 120 0 chr21 14948884 14949284 -29958286 + LTR7 LTR ERV1 1 448 -2 424 331 49 49 chr21 14949391 14949636 -29957934 - MIR SINE MIR -17 245 1 354 287 119 105 chr21 14950112 14950637 -29956933 - L2 LINE L2 -10 3303 2767 22 0 0 0 chr21 14952047 14952069 -29955501 + AT_rich Low_complexity Low_complexity 1 22 0 1365 227 64 6 chr21 14952877 14953221 -29954349 + MLT1A1 LTR MaLR 1 364 -1 522 292 26 31 chr21 14953530 14953722 -29953848 + MLT1K LTR MaLR 69 259 -329 268 348 79 51 chr21 14953711 14953889 -29953681 + MLT1K LTR MaLR 404 586 -2 * 185 232 116 14 chr21 14953921 14953990 -29953580 + L2 LINE L2 2714 2789 -525 887 195 53 0 chr21 14954365 14954534 -29953036 + MER5A DNA MER1_type 1 178 -11 439 279 85 8 chr21 14955102 14955231 -29952339 + MIR SINE MIR 12 150 -112 260 348 80 9 chr21 14956018 14956130 -29951440 - L2 LINE L2 -21 3292 3173 189 274 105 32 chr21 14956117 14956212 -29951358 + L2 LINE L2 3192 3293 -20 * 2372 66 3 0 chr21 14956263 14956565 -29951005 + AluY SINE Alu 1 303 -8 1930 187 83 30 chr21 14956724 14957184 -29950386 + LTR2B LTR ERV1 7 490 0 24 0 0 0 chr21 14957994 14958018 -29949552 + AT_rich Low_complexity Low_complexity 1 24 0 291 349 75 52 chr21 14958103 14958355 -29949215 + L2 LINE L2 3015 3272 0 267 31 0 0 chr21 14958615 14958647 -29948923 + (TG)n Simple_repeat Simple_repeat 2 33 0 2227 106 0 0 chr21 14958755 14959056 -29948514 - AluSx SINE Alu -11 301 1 2225 118 0 29 chr21 14959253 14959600 -29947970 - MER1B DNA MER1_type 0 337 1 269 308 106 35 chr21 14959623 14959821 -29947749 + MLT1J LTR MaLR 265 476 -35 21 36 0 0 chr21 14960150 14960178 -29947392 + AT_rich Low_complexity Low_complexity 1 28 0 21 71 0 0 chr21 14960339 14960381 -29947189 + AT_rich Low_complexity Low_complexity 1 42 0 251 259 0 0 chr21 14960914 14960972 -29946598 + (TG)n Simple_repeat Simple_repeat 2 59 0 1137 256 6 31 chr21 14961264 14961588 -29945982 - L1ME2 LINE L1 -9 6224 5909 2050 288 54 10 chr21 14961589 14962180 -29945390 + MLT1E3 LTR MaLR 1 617 -7 4899 246 79 34 chr21 14962183 14962223 -29945347 - L1ME2 LINE L1 -320 5913 5876 1547 267 118 20 chr21 14962223 14962763 -29944807 - MLT1E LTR MaLR 0 593 1 4899 246 79 34 chr21 14962763 14965176 -29942394 - L1ME2 LINE L1 -357 5876 3347 1373 286 62 55 chr21 14965204 14966229 -29941341 - L1ME2 LINE L1 -5007 1389 357 350 239 37 9 chr21 14968632 14968741 -29938829 - MER58B DNA MER1_type -8 333 222 894 184 8 115 chr21 14969180 14969424 -29938146 + MER20 DNA MER1_type 1 218 -1 1909 194 160 6 chr21 14970339 14970813 -29936757 - L1MC3 LINE L1 -4 7781 7235 27 29 0 0 chr21 14970838 14970872 -29936698 + AT_rich Low_complexity Low_complexity 1 34 0 2439 72 3 0 chr21 14971464 14971771 -29935799 + AluSc SINE Alu 2 309 0 22 0 0 0 chr21 14971970 14971992 -29935578 + AT_rich Low_complexity Low_complexity 1 22 0 241 264 14 14 chr21 14972236 14972308 -29935262 + L1MEd LINE L1 12 83 -6036 328 319 109 77 chr21 14972648 14972911 -29934659 + L1MEd LINE L1 441 725 -5394 5331 73 1 6 chr21 14972911 14973620 -29933950 + L1PA8 LINE L1 5467 6172 0 328 319 109 77 chr21 14973620 14973786 -29933784 + L1MEd LINE L1 725 884 -5235 281 298 97 68 chr21 14974457 14975074 -29932496 + L1ME3 LINE L1 467 1101 -5018 4317 93 37 2 chr21 14975500 14976124 -29931446 + L1PA13 LINE L1 5509 6154 -9 423 0 0 0 chr21 14976124 14976171 -29931399 + (CA)n Simple_repeat Simple_repeat 2 48 0 628 270 22 39 chr21 14976280 14976510 -29931060 - L2 LINE L2 -1 3312 3087 201 224 0 75 chr21 14976662 14976729 -29930841 - MIR SINE MIR -12 250 189 936 280 118 53 chr21 14976780 14977740 -29929830 + L1ME3 LINE L1 4364 5385 -744 1695 291 29 13 chr21 14977785 14978152 -29929418 + L1ME3 LINE L1 5472 5855 -290 1924 106 7 3 chr21 14978152 14978472 -29929098 + AluSg SINE Alu 1 321 0 1695 291 29 13 chr21 14978472 14978715 -29928855 + L1ME3 LINE L1 5855 6093 -52 819 253 60 29 chr21 14978790 14978948 -29928622 + L1MC5 LINE L1 7533 7685 -276 2327 63 0 66 chr21 14978948 14979298 -29928272 - L1PA7 LINE L1 -7 6147 5821 819 253 60 29 chr21 14979298 14979522 -29928048 + L1MC5 LINE L1 7685 7927 -34 1670 135 15 0 chr21 14979541 14979801 -29927769 + L1PA16 LINE L1 5894 6157 -9 398 317 98 31 chr21 14979871 14980517 -29927053 + L1ME LINE L1 1013 1701 -4695 31 44 0 0 chr21 14980901 14980946 -29926624 + AT_rich Low_complexity Low_complexity 1 45 0 757 284 157 31 chr21 14980946 14981853 -29925717 + L1ME LINE L1 2197 3217 -2998 530 239 35 44 chr21 14982020 14982338 -29925232 + L1ME LINE L1 3175 3489 -2726 7266 50 3 0 chr21 14982383 14983280 -29924290 - L1PA6 LINE L1 -1 6153 5254 314 293 0 0 chr21 14983289 14983388 -29924182 + L1ME LINE L1 3545 3643 -2572 * 486 261 30 2 chr21 14983377 14983525 -29924045 + L1ME LINE L1 5530 5676 -514 21 0 0 0 chr21 14984071 14984092 -29923478 + AT_rich Low_complexity Low_complexity 1 21 0 21 36 0 0 chr21 14984756 14984784 -29922786 + AT_rich Low_complexity Low_complexity 1 28 0 2427 59 0 0 chr21 14985662 14985967 -29921603 + AluY SINE Alu 1 305 -6 526 246 8 45 chr21 14986154 14986288 -29921282 - L2 LINE L2 -8 3305 3177 258 277 244 0 chr21 14986360 14986479 -29921091 - L2 LINE L2 -458 2856 2709 24 0 0 0 chr21 14986860 14986884 -29920686 + AT_rich Low_complexity Low_complexity 1 24 0 3419 227 116 17 chr21 14986980 14988069 -29919501 + L1MC3 LINE L1 6583 7778 -7 373 224 0 0 chr21 14990684 14990751 -29916819 + MER69 DNA AcHobo 5 71 -2455 437 271 7 14 chr21 14990754 14990898 -29916672 + MER69 DNA AcHobo 2384 2526 0 225 0 0 0 chr21 14990935 14990960 -29916610 + (CA)n Simple_repeat Simple_repeat 2 26 0 251 279 42 24 chr21 14991129 14991294 -29916276 + L1M4 LINE L1 2210 2377 -3769 1990 174 14 11 chr21 14991324 14991675 -29915895 - MLT1A1 LTR MaLR 0 365 14 655 307 132 30 chr21 14992025 14992488 -29915082 + L1MEd LINE L1 166 675 -5444 303 269 58 19 chr21 14993994 14994098 -29913472 + LTR67 LTR ERVL 450 557 0 554 222 21 109 chr21 14994672 14994911 -29912659 - MER20 DNA MER1_type 0 219 2 519 249 10 129 chr21 14994926 14995119 -29912451 - MIR SINE MIR -71 191 22 23 33 0 0 chr21 14997497 14997527 -29910043 + AT_rich Low_complexity Low_complexity 1 30 0 27 73 0 0 chr21 14997566 14997621 -29909949 + AT_rich Low_complexity Low_complexity 1 55 0 1813 242 88 22 chr21 14998278 14998438 -29909132 - MLT1E3 LTR MaLR 0 624 476 2523 111 8 3 chr21 14998438 14998800 -29908770 + THE1B LTR MaLR 1 364 0 1813 242 88 22 chr21 14998800 14999253 -29908317 - MLT1E3 LTR MaLR -148 476 1 1606 135 60 83 chr21 15000009 15000393 -29907177 - THE1C LTR MaLR 0 375 1 225 0 0 0 chr21 15000497 15000522 -29907048 + (TA)n Simple_repeat Simple_repeat 2 26 0 22 35 0 0 chr21 15000737 15000766 -29906804 + AT_rich Low_complexity Low_complexity 1 29 0 261 57 0 0 chr21 15001065 15001100 -29906470 + (TC)n Simple_repeat Simple_repeat 1 35 0 433 253 39 66 chr21 15002003 15002185 -29905385 + MER5B DNA MER1_type 1 177 -1 481 304 58 23 chr21 15002193 15002364 -29905206 + MER5B DNA MER1_type 2 178 0 407 274 65 30 chr21 15004207 15004375 -29903195 + MIR SINE MIR 62 235 -27 21 57 0 0 chr21 15004464 15004499 -29903071 + AT_rich Low_complexity Low_complexity 1 35 0 1667 181 4 0 chr21 15005194 15005498 -29902072 + AluSx SINE Alu 1 305 0 2443 59 0 0 chr21 15005586 15005891 -29901679 - AluY SINE Alu 0 311 7 1557 178 105 11 chr21 15005930 15006312 -29901258 + L1MC3 LINE L1 7368 7785 0 925 210 26 0 chr21 15006608 15006803 -29900767 + MER3 DNA MER1_type 1 200 -9 2498 46 3 3 chr21 15007320 15007624 -29899946 + AluY SINE Alu 1 304 -7 2450 315 102 44 chr21 15007882 15009373 -29898197 + L2 LINE L2 88 1665 -1649 422 257 40 20 chr21 15009409 15009557 -29898013 + L2 LINE L2 2983 3133 -180 1584 149 68 49 chr21 15011822 15012190 -29895380 - THE1C LTR MaLR 0 375 1 9140 142 15 38 chr21 15012190 15013804 -29893766 - THE1C-int LTR MaLR 0 1580 4 1635 169 60 35 chr21 15013807 15014173 -29893397 - THE1C LTR MaLR 0 375 1 2061 123 0 0 chr21 15014802 15015114 -29892456 + AluSx SINE Alu 1 312 0 2643 260 61 20 chr21 15016833 15018587 -29888983 - L1ME1 LINE L1 -4 6231 4337 232 284 63 8 chr21 15018589 15018716 -29888854 - L1ME1 LINE L1 -4881 1334 1201 23 54 0 0 chr21 15018753 15018790 -29888780 + AT_rich Low_complexity Low_complexity 1 37 0 1331 300 63 46 chr21 15018810 15019365 -29888205 - L1ME1 LINE L1 -4984 1221 677 2386 74 0 3 chr21 15019365 15019677 -29887893 - AluY SINE Alu 0 311 1 1331 300 63 46 chr21 15019677 15020245 -29887325 - L1ME1 LINE L1 -5528 677 107 1294 247 16 10 chr21 15020842 15021225 -29886345 + L1ME LINE L1 5440 5774 -392 4323 43 2 2 chr21 15021229 15021764 -29885806 - L1PA5 LINE L1 -4 6150 5616 24 32 0 0 chr21 15022361 15022392 -29885178 + AT_rich Low_complexity Low_complexity 1 31 0 26 30 0 0 chr21 15023297 15023330 -29884240 + AT_rich Low_complexity Low_complexity 1 33 0 2176 105 0 10 chr21 15024340 15024634 -29882936 - AluSx SINE Alu -21 291 1 239 370 49 31 chr21 15024702 15024864 -29882706 - MIR3 SINE MIR -34 174 10 1748 122 4 19 chr21 15026895 15027158 -29880412 - THE1B LTR MaLR -105 259 1 1936 106 4 8 chr21 15027328 15027592 -29879978 + AluSq SINE Alu 36 298 -15 517 105 12 0 chr21 15027612 15027698 -29879872 + L1PA13 LINE L1 6076 6162 -1 23 0 0 0 chr21 15027718 15027741 -29879829 + AT_rich Low_complexity Low_complexity 1 23 0 1770 197 27 49 chr21 15028993 15029182 -29878388 - Charlie4a DNA MER1_type -1457 504 312 1673 185 23 3 chr21 15029182 15029484 -29878086 - AluJb SINE Alu -4 308 1 1770 197 27 49 chr21 15029484 15029807 -29877763 - Charlie4a DNA MER1_type -1649 312 3 2745 87 42 10 chr21 15030052 15030456 -29877114 - L1PA8 LINE L1 0 6172 5756 1901 73 4 0 chr21 15030457 15030704 -29876866 + L1PA8 LINE L1 5520 5767 -405 21 36 0 0 chr21 15032045 15032073 -29875497 + AT_rich Low_complexity Low_complexity 1 28 0 189 0 0 0 chr21 15032080 15032101 -29875469 + (TA)n Simple_repeat Simple_repeat 1 21 0 344 239 0 0 chr21 15032186 15032257 -29875313 - MLT1L LTR MaLR -381 234 164 472 283 17 0 chr21 15032704 15032824 -29874746 + L2 LINE L2 3192 3313 0 4556 195 26 1 chr21 15034351 15035325 -29872245 - L1 LINE L1 -1344 4802 3805 * 4955 129 20 12 chr21 15035297 15036106 -29871464 + L1PA16 LINE L1 5336 6150 -16 41 48 0 0 chr21 15036107 15036169 -29871401 + AT_rich Low_complexity Low_complexity 1 62 0 257 284 0 55 chr21 15036231 15036340 -29871230 + L1ME4a LINE L1 5584 5686 -435 983 151 6 6 chr21 15036831 15036990 -29870580 + U1 snRNA snRNA 7 165 0 303 257 67 66 chr21 15037108 15037464 -29870106 + L1ME4a LINE L1 5725 6117 -4 6135 57 5 1 chr21 15038319 15039104 -29868466 + L1PA7 LINE L1 5367 6154 0 216 354 57 57 chr21 15039398 15039607 -29867963 - L2 LINE L2 0 3313 3105 * 632 302 4 86 chr21 15039605 15039873 -29867697 + MIR SINE MIR 12 257 -5 212 304 29 80 chr21 15041964 15042102 -29865468 + L2 LINE L2 2302 2432 -882 201 294 22 0 chr21 15042172 15042264 -29865306 + (TATATG)n Simple_repeat Simple_repeat 6 99 0 184 338 103 15 chr21 15042721 15042857 -29864713 + L2 LINE L2 3149 3296 -17 545 271 46 7 chr21 15042973 15043124 -29864446 - MIR SINE MIR -24 238 82 224 328 0 0 chr21 15043711 15043769 -29863801 - MIR SINE MIR -179 83 26 980 236 71 52 chr21 15043772 15044599 -29862971 + Zaphod DNA AcHobo 1 989 -3042 1096 241 121 3 chr21 15044605 15044986 -29862584 + Zaphod DNA AcHobo 3601 4026 -5 2780 13 0 0 chr21 15045998 15046309 -29861261 + AluYa5 SINE Alu 1 311 0 26 0 0 0 chr21 15046658 15046684 -29860886 + AT_rich Low_complexity Low_complexity 1 26 0 2344 65 3 10 chr21 15047880 15048189 -29859381 - AluY SINE Alu -4 307 1 306 0 0 0 chr21 15048196 15048230 -29859340 + (TTA)n Simple_repeat Simple_repeat 3 36 0 5596 32 0 0 chr21 15048230 15048892 -29858678 - L1PA4 LINE L1 -18 6137 5476 9452 29 2 1 chr21 15048903 15050798 -29856772 - L1PA4 LINE L1 0 6155 4259 1857 19 0 0 chr21 15050798 15051010 -29856560 + L1PA4 LINE L1 5940 6154 -1 21222 99 19 4 chr21 15051027 15054953 -29852617 + L1PA7 LINE L1 2175 6154 0 251 71 24 0 chr21 15055508 15055550 -29852020 + (TAGA)n Simple_repeat Simple_repeat 4 46 0 299 295 108 14 chr21 15056431 15056570 -29851000 + MIR SINE MIR 94 245 -17 256 313 82 30 chr21 15056600 15056734 -29850836 + MIR SINE MIR 8 148 -114 1602 197 44 19 chr21 15057316 15057681 -29849889 + MLT1A2 LTR MaLR 1 374 0 607 230 99 6 chr21 15058287 15058448 -29849122 - MER45A DNA AcHobo -1 177 2 440 275 161 0 chr21 15060683 15060832 -29846738 - MIR SINE MIR 0 262 90 254 73 24 0 chr21 15061132 15061173 -29846397 + (TC)n Simple_repeat Simple_repeat 1 42 0 198 360 52 15 chr21 15061570 15061706 -29845864 + L3b LINE CR1 1283 1423 -160 243 348 18 18 chr21 15061747 15061859 -29845711 + L3 LINE CR1 1310 1421 -156 555 248 20 0 chr21 15062315 15062468 -29845102 + L1MA10 LINE L1 6176 6331 -3 201 94 0 0 chr21 15063745 15063777 -29843793 + (TTTG)n Simple_repeat Simple_repeat 2 33 0 303 122 0 0 chr21 15065132 15065181 -29842389 + (TATATG)n Simple_repeat Simple_repeat 6 54 0 267 253 0 11 chr21 15065181 15065272 -29842298 - L1MC4 LINE L1 -1339 6703 6614 236 205 90 0 chr21 15065203 15065281 -29842289 + L1MC4 LINE L1 6616 6700 -1342 * 212 139 0 23 chr21 15065282 15065325 -29842245 + (TA)n Simple_repeat Simple_repeat 1 42 0 336 237 0 32 chr21 15065333 15065426 -29842144 + L1MC4 LINE L1 6614 6703 -1339 324 247 0 32 chr21 15065347 15065440 -29842130 - L1MC4 LINE L1 -1339 6703 6614 * 238 244 0 0 chr21 15065448 15065534 -29842036 - L1MC4 LINE L1 -1341 6701 6616 1832 183 41 68 chr21 15065754 15066192 -29841378 + MSTB LTR MaLR 1 426 0 2073 70 7 0 chr21 15066798 15067069 -29840501 - AluY SINE Alu 0 311 39 27 49 0 0 chr21 15067652 15067693 -29839877 + AT_rich Low_complexity Low_complexity 1 41 0 361 299 38 13 chr21 15068896 15069053 -29838517 - MIR SINE MIR -71 191 31 180 0 0 0 chr21 15069387 15069407 -29838163 + (T)n Simple_repeat Simple_repeat 1 20 0 1750 288 47 4 chr21 15071249 15071777 -29835793 - MLT1H1 LTR MaLR -2 553 3 686 231 90 41 chr21 15071897 15072286 -29835284 + L1MC5 LINE L1 7524 7931 -30 358 323 24 127 chr21 15072546 15072924 -29834646 - L2 LINE L2 0 3272 2934 521 42 28 0 chr21 15073071 15073142 -29834428 + (TTCC)n Simple_repeat Simple_repeat 4 76 0 193 313 0 16 chr21 15073166 15073230 -29834340 - L2 LINE L2 -773 2541 2479 589 263 66 70 chr21 15073315 15073356 -29834214 - MIR SINE MIR -32 230 190 2044 115 7 0 chr21 15073356 15073635 -29833935 + AluSq SINE Alu 1 281 -32 212 0 0 35 chr21 15073636 15073665 -29833905 + (CAAAA)n Simple_repeat Simple_repeat 2 29 0 589 263 66 70 chr21 15073665 15073849 -29833721 - MIR SINE MIR -71 191 4 382 187 81 65 chr21 15073858 15073981 -29833589 + MLT1J2 LTR MaLR 48 172 -278 267 305 36 42 chr21 15074247 15074414 -29833156 - L2 LINE L2 -865 2449 2284 21542 32 0 0 chr21 15074705 15078083 -29829487 + L1PA4 LINE L1 2769 6153 -2 1480 244 70 70 chr21 15078163 15078705 -29828865 - MLT1F1 LTR MaLR 0 567 1 9396 155 22 17 chr21 15078725 15078746 -29828824 + L1MA3 LINE L1 3431 3450 -2855 1615 204 0 32 chr21 15078746 15079060 -29828510 + AluJb SINE Alu 3 306 -6 9396 155 22 17 chr21 15079060 15081906 -29825664 + L1MA3 LINE L1 3450 6305 0 180 0 0 0 chr21 15082219 15082239 -29825331 + (TG)n Simple_repeat Simple_repeat 2 21 0 * 257 75 25 0 chr21 15082238 15082278 -29825292 + (TA)n Simple_repeat Simple_repeat 1 41 0 2057 107 0 0 chr21 15082354 15082670 -29824900 - AluY SINE Alu 0 316 1 257 274 0 105 chr21 15083730 15083825 -29823745 - L2 LINE L2 0 3272 3188 1454 175 24 3 chr21 15085039 15085330 -29822240 + L1MB3 LINE L1 5887 6183 0 542 285 26 55 chr21 15085452 15085761 -29821809 + HAL1b LINE L1 368 667 -681 332 329 84 12 chr21 15085783 15085950 -29821620 + HAL1b LINE L1 733 911 -437 604 287 24 6 chr21 15086543 15086707 -29820863 + MIR3 SINE MIR 41 207 -1 1762 135 7 31 chr21 15086964 15087290 -29820280 - AluSx SINE Alu 0 319 1 23 54 0 0 chr21 15089212 15089249 -29818321 + AT_rich Low_complexity Low_complexity 1 37 0 1041 126 0 106 chr21 15089814 15090012 -29817558 + AluY SINE Alu 5 181 -130 236 189 0 0 chr21 15090033 15090086 -29817484 + A-rich Low_complexity Low_complexity 1 53 0 301 359 112 46 chr21 15090610 15091067 -29816503 + L2 LINE L2 2811 3297 -16 477 333 71 18 chr21 15093806 15094031 -29813539 - MIR SINE MIR -12 250 14 1073 221 169 24 chr21 15096907 15097369 -29810201 + L1MC4a LINE L1 6747 7275 -533 2473 181 53 10 chr21 15097380 15097887 -29809683 + MER34 LTR ERV1 11 539 -3 369 234 31 55 chr21 15097889 15098017 -29809553 + L1MC4 LINE L1 7352 7476 -566 1883 166 0 16 chr21 15098285 15098599 -29808971 + AluJo SINE Alu 1 309 -3 1220 128 0 0 chr21 15099363 15099535 -29808035 + L1PA7 LINE L1 1 172 -6289 * 4788 148 13 24 chr21 15099534 15100505 -29807065 + L1PA7 LINE L1 1104 2059 -4397 16627 102 11 0 chr21 15100505 15103788 -29803782 + L1PA7 LINE L1 3187 6465 -4 25 65 0 0 chr21 15103901 15103947 -29803623 + AT_rich Low_complexity Low_complexity 1 46 0 318 132 0 0 chr21 15104561 15104614 -29802956 + (TG)n Simple_repeat Simple_repeat 2 54 0 245 305 126 29 chr21 15104779 15104953 -29802617 - L2 LINE L2 -908 2406 2216 729 286 93 51 chr21 15107200 15107675 -29799895 - L1ME LINE L1 -355 5815 5314 1554 209 3 3 chr21 15107675 15107972 -29799598 - AluJo SINE Alu -15 297 1 729 286 93 51 chr21 15107972 15108023 -29799547 - L1ME LINE L1 -856 5314 5267 1479 271 64 56 chr21 15108052 15108558 -29799012 - L1ME LINE L1 -964 5182 4664 1959 110 4 0 chr21 15108558 15108854 -29798716 - AluSq SINE Alu 0 317 21 1479 271 64 56 chr21 15108854 15109227 -29798343 - L1ME LINE L1 -1482 4664 4295 21 71 0 0 chr21 15109775 15109817 -29797753 + AT_rich Low_complexity Low_complexity 1 42 0 28 0 0 0 chr21 15110316 15110344 -29797226 + AT_rich Low_complexity Low_complexity 1 28 0 227 358 33 46 chr21 15111200 15111351 -29796219 - L2 LINE L2 -4 3309 3161 256 163 23 0 chr21 15112856 15112899 -29794671 - L3 LINE CR1 -944 633 590 304 260 26 0 chr21 15112919 15112996 -29794574 - L2 LINE L2 -2 3270 3192 702 297 72 53 chr21 15113163 15113691 -29793879 + L1MC4a LINE L1 5350 5887 -1921 521 263 41 29 chr21 15114775 15114946 -29792624 - MER69A DNA AcHobo -1 176 4 222 37 0 0 chr21 15116247 15116274 -29791296 + (A)n Simple_repeat Simple_repeat 1 27 0 624 306 51 5 chr21 15116864 15117060 -29790510 - MIR SINE MIR 0 262 58 677 299 47 49 chr21 15117818 15118223 -29789347 - MLT1I LTR MaLR 0 409 6 241 111 0 0 chr21 15120894 15120930 -29786640 + L2 LINE L2 3271 3306 -7 539 336 71 34 chr21 15121119 15121443 -29786127 - L3 LINE CR1 -193 1384 1049 297 298 79 35 chr21 15121451 15121565 -29786005 - L2 LINE L2 -1 3271 3153 24 0 0 0 chr21 15121721 15121745 -29785825 + AT_rich Low_complexity Low_complexity 1 24 0 23 68 0 0 chr21 15121967 15122011 -29785559 + AT_rich Low_complexity Low_complexity 1 44 0 303 367 44 41 chr21 15122351 15122621 -29784949 + L1ME2 LINE L1 149 419 -5977 460 230 165 45 chr21 15122858 15123240 -29784330 + L1ME2 LINE L1 725 1152 -5244 1160 270 78 66 chr21 15123322 15124227 -29783343 + L1ME2 LINE L1 1343 2258 -4138 766 385 36 11 chr21 15124293 15124849 -29782721 + ERVL LTR ERVL 4258 4827 -937 757 367 25 16 chr21 15125566 15125934 -29781636 + LTR16A LTR ERVL 53 423 -27 768 275 51 18 chr21 15125953 15126346 -29781224 + L1ME2 LINE L1 4524 4929 -1286 24 32 0 0 chr21 15126358 15126389 -29781181 + AT_rich Low_complexity Low_complexity 1 31 0 948 240 32 58 chr21 15126414 15127021 -29780549 + L1ME2 LINE L1 4917 5512 -721 2106 183 0 3 chr21 15127053 15127419 -29780151 + MLT1A1 LTR MaLR 1 365 0 1329 238 160 9 chr21 15127458 15127921 -29779649 + L1ME2 LINE L1 5650 6182 -51 207 216 0 0 chr21 15128163 15128200 -29779370 - L2 LINE L2 -13 3300 3264 211 378 0 14 chr21 15128555 15128629 -29778941 - MER5A DNA MER1_type -28 161 89 22 56 0 0 chr21 15130829 15130865 -29776705 + AT_rich Low_complexity Low_complexity 1 36 0 392 300 95 61 chr21 15131147 15131878 -29775692 + L1M4 LINE L1 3030 4433 -1713 558 311 90 56 chr21 15131985 15132627 -29774943 + L1M4 LINE L1 4570 5233 -913 872 255 166 0 chr21 15132653 15132924 -29774646 - MER5C DNA MER1_type 0 324 9 333 347 90 53 chr21 15133149 15133774 -29773796 + L2 LINE L2 2564 3270 -2 198 0 0 0 chr21 15133867 15133889 -29773681 + (GAAAA)n Simple_repeat Simple_repeat 4 25 0 425 274 55 65 chr21 15134462 15134663 -29772907 - LTR67 LTR ERVL -2 555 357 716 253 12 24 chr21 15135232 15135402 -29772168 - MER20 DNA MER1_type -11 208 41 1908 139 10 7 chr21 15135567 15135877 -29771693 - AluSq SINE Alu -2 311 1 2441 47 3 3 chr21 15135901 15136199 -29771371 - AluY SINE Alu -13 298 1 34 42 0 0 chr21 15136220 15136268 -29771302 + AT_rich Low_complexity Low_complexity 1 48 0 1567 179 13 23 chr21 15136690 15136998 -29770572 + AluJb SINE Alu 1 305 -7 358 314 126 6 chr21 15137031 15137190 -29770380 - MER5B DNA MER1_type 0 178 1 252 149 0 0 chr21 15137342 15137389 -29770181 + (TC)n Simple_repeat Simple_repeat 2 48 0 182 438 27 0 chr21 15137760 15137872 -29769698 + MIR3 SINE MIR 81 195 -13 23 0 0 0 chr21 15137937 15137960 -29769610 + AT_rich Low_complexity Low_complexity 1 23 0 311 280 0 17 chr21 15139044 15139162 -29768408 + (TA)n Simple_repeat Simple_repeat 1 116 0 576 274 49 36 chr21 15139232 15139455 -29768115 + MIR SINE MIR 37 262 0 450 315 113 52 chr21 15139558 15139885 -29767685 + LTR16A LTR ERVL 104 450 0 1577 209 0 7 chr21 15139916 15140223 -29767347 - AluJb SINE Alu -7 305 1 1096 331 36 29 chr21 15140236 15140852 -29766718 + HERV16 LTR ERVL 37 656 -4340 1753 171 10 7 chr21 15141034 15141493 -29766077 - AluJb SINE Alu 0 460 1 1197 354 61 14 chr21 15141499 15142192 -29765378 + HERV16 LTR ERVL 826 1550 -3446 2294 303 52 34 chr21 15142316 15143462 -29764108 + HERV16 LTR ERVL 1818 3027 -1969 194 165 10 31 chr21 15143618 15143715 -29763855 + (TA)n Simple_repeat Simple_repeat 1 95 0 2495 149 13 10 chr21 15143718 15143734 -29763836 - MSTA LTR MaLR -26 387 373 2041 135 7 0 chr21 15143734 15144031 -29763539 + AluSx SINE Alu 1 299 -13 2495 149 13 10 chr21 15144031 15144416 -29763154 - MSTA LTR MaLR -40 373 1 305 238 24 12 chr21 15144417 15144501 -29763069 + HERV16 LTR ERVL 3093 3177 -2308 1594 186 96 6 chr21 15144580 15144914 -29762656 + MLT1A1 LTR MaLR 2 365 0 819 309 71 32 chr21 15145002 15145498 -29762072 + HERV16 LTR ERVL 3841 4355 -1409 2214 65 3 58 chr21 15147005 15147313 -29760257 - AluY SINE Alu -8 303 13 370 248 96 86 chr21 15147446 15147644 -29759926 + MIR SINE MIR 57 256 -6 423 333 145 18 chr21 15149892 15150174 -29757396 - L2 LINE L2 -5 3308 2991 204 239 15 0 chr21 15150458 15150525 -29757045 + (TA)n Simple_repeat Simple_repeat 2 69 0 180 0 0 0 chr21 15150900 15150920 -29756650 + (TTTA)n Simple_repeat Simple_repeat 2 21 0 24 32 0 0 chr21 15151329 15151360 -29756210 + AT_rich Low_complexity Low_complexity 1 31 0 1710 286 42 57 chr21 15152171 15153130 -29754440 + L1ME LINE L1 45 988 -5082 1643 252 69 2 chr21 15153136 15153612 -29753958 + L1MC4a LINE L1 7201 7708 -100 1375 268 48 23 chr21 15153616 15154221 -29753349 + L1M4 LINE L1 4542 5161 -985 219 370 0 0 chr21 15157029 15157102 -29750468 + L2 LINE L2 3185 3257 -15 316 321 67 12 chr21 15157936 15158114 -29749456 + MIR3 SINE MIR 5 193 -15 191 196 98 0 chr21 15161424 15161475 -29746095 - MIR SINE MIR -75 187 132 23 33 0 0 chr21 15162371 15162401 -29745169 + AT_rich Low_complexity Low_complexity 1 30 0 216 291 12 58 chr21 15163139 15163225 -29744345 - MIR SINE MIR -18 244 163 324 0 0 0 chr21 15163658 15163694 -29743876 + (A)n Simple_repeat Simple_repeat 1 36 0 593 181 0 0 chr21 15163769 15163874 -29743696 - FLAM_A SINE Alu -5 137 33 1151 258 71 32 chr21 15164052 15164432 -29743138 - MSTD LTR MaLR -1 395 1 232 259 0 0 chr21 15164464 15164518 -29743052 + (CATA)n Simple_repeat Simple_repeat 3 56 0 781 330 39 17 chr21 15165294 15165652 -29741918 + LTR33 LTR ERVL 155 520 -1 24 0 0 0 chr21 15165737 15165761 -29741809 + AT_rich Low_complexity Low_complexity 1 24 0 358 273 47 0 chr21 15165776 15165904 -29741666 + MER110 LTR ERV1 310 443 -48 22 0 0 0 chr21 15165970 15165992 -29741578 + AT_rich Low_complexity Low_complexity 1 22 0 363 293 103 0 chr21 15167061 15167177 -29740393 + LTR33 LTR ERVL 303 430 -91 275 148 39 16 chr21 15168267 15168395 -29739175 + (TA)n Simple_repeat Simple_repeat 2 132 0 259 136 0 23 chr21 15168708 15168752 -29738818 - tRNA-Cys-TGC tRNA tRNA -30 45 3 507 242 124 6 chr21 15168758 15168919 -29738651 + MIR SINE MIR 44 223 -39 32 26 0 0 chr21 15169212 15169251 -29738319 + AT_rich Low_complexity Low_complexity 1 39 0 290 101 38 51 chr21 15170969 15171048 -29736522 + GA-rich Low_complexity Low_complexity 4 81 0 21 36 0 0 chr21 15172308 15172336 -29735234 + AT_rich Low_complexity Low_complexity 1 28 0 32 26 0 0 chr21 15172450 15172489 -29735081 + AT_rich Low_complexity Low_complexity 1 39 0 329 77 19 0 chr21 15172510 15172562 -29735008 - Alu SINE Alu 0 302 250 333 211 13 0 chr21 15172567 15172643 -29734927 - L1MB2 LINE L1 -74 6097 6021 3030 221 60 68 chr21 15172657 15174162 -29733408 - L1M4c LINE L1 -4352 2211 800 282 325 26 26 chr21 15174352 15174503 -29733067 - L1M4c LINE L1 -5738 565 415 24 91 0 0 chr21 15175782 15175848 -29731722 + AT_rich Low_complexity Low_complexity 1 66 0 2362 72 0 7 chr21 15176943 15177247 -29730323 + AluY SINE Alu 1 302 -9 1632 179 4 7 chr21 15177573 15177852 -29729718 + AluJb SINE Alu 1 278 -34 3241 123 16 15 chr21 15177854 15178568 -29729002 - L1P5 LINE L1 -412 5739 5030 189 107 0 0 chr21 15178704 15178732 -29728838 + (T)n Simple_repeat Simple_repeat 1 28 0 209 284 122 14 chr21 15178947 15179021 -29728549 + L2 LINE L2 3175 3256 -16 663 290 68 53 chr21 15180217 15180659 -29726911 - L1MC4a LINE L1 -528 5642 5496 21 0 0 0 chr21 15183200 15183221 -29724349 + AT_rich Low_complexity Low_complexity 1 21 0 322 311 47 9 chr21 15184553 15184659 -29722911 - MIR SINE MIR -66 142 33 2125 140 7 0 chr21 15185585 15185892 -29721678 + AluSx SINE Alu 1 309 -3 24 32 0 0 chr21 15185995 15186026 -29721544 + AT_rich Low_complexity Low_complexity 1 31 0 776 208 30 1 chr21 15186512 15186691 -29720879 + L1MA7 LINE L1 5867 6017 -139 501 174 25 25 chr21 15186692 15186813 -29720757 + L1MA7 LINE L1 6160 6280 -11 353 353 7 7 chr21 15187128 15187281 -29720289 + MIR SINE MIR 110 262 0 314 303 181 13 chr21 15187486 15187641 -29719929 + MIR3 SINE MIR 16 196 -12 789 257 5 28 chr21 15187723 15187937 -29719633 - LTR16A1 LTR ERVL 0 457 249 35 63 0 0 chr21 15189042 15189105 -29718465 + AT_rich Low_complexity Low_complexity 1 63 0 221 163 20 0 chr21 15189164 15189213 -29718357 + CT-rich Low_complexity Low_complexity 3 52 0 23 0 0 0 chr21 15190561 15190584 -29716986 + AT_rich Low_complexity Low_complexity 1 23 0 231 348 0 11 chr21 15191072 15191161 -29716409 - MIR SINE MIR -103 105 18 28 48 0 0 chr21 15192279 15192321 -29715249 + AT_rich Low_complexity Low_complexity 1 42 0 2946 181 6 0 chr21 15192628 15193110 -29714460 + L1MA4 LINE L1 1 485 -4843 * 7545 172 37 17 chr21 15193108 15195548 -29712022 + L1MA4 LINE L1 3952 6452 -30 22 0 0 0 chr21 15195558 15195580 -29711990 + AT_rich Low_complexity Low_complexity 1 22 0 941 305 58 22 chr21 15195580 15195941 -29711629 + L2 LINE L2 2131 2504 -810 2317 97 3 0 chr21 15196841 15197150 -29710420 + AluY SINE Alu 1 310 -1 25542 148 17 16 chr21 15197226 15202764 -29704806 + L1PA10 LINE L1 859 6483 0 190 0 0 0 chr21 15202764 15202785 -29704785 + (TAAAA)n Simple_repeat Simple_repeat 1 160 0 1611 0 0 0 chr21 15202899 15203079 -29704491 + L1PA3 LINE L1 5792 5971 -184 691 253 55 93 chr21 15203265 15203629 -29703941 - MLT1H LTR MaLR -188 361 12 746 272 78 19 chr21 15205133 15205401 -29702169 - MLT1H LTR MaLR -258 291 8 1543 204 3 0 chr21 15207315 15207599 -29699971 - AluJo SINE Alu -12 300 16 1567 210 97 44 chr21 15209202 15209678 -29697892 + MLT1D LTR MaLR 5 505 0 449 362 37 7 chr21 15209678 15210004 -29697566 + L2 LINE L2 2742 3077 -236 2561 82 119 5 chr21 15210046 15210448 -29697122 + LTR7 LTR ERV1 1 448 -2 27696 84 19 13 chr21 15210450 15214417 -29693153 + HERVH LTR ERV1 1 3993 -3720 4164 155 1 3 chr21 15214419 15215082 -29692488 + HERVH LTR ERV1 4488 5149 -2564 1370 128 23 5 chr21 15215079 15215298 -29692272 + HERVH LTR ERV1 5597 5819 -1894 * 2254 107 53 13 chr21 15215298 15215673 -29691897 + HERVH LTR ERV1 7324 7713 0 2490 87 119 10 chr21 15215673 15216077 -29691493 + LTR7 LTR ERV1 1 448 -2 240 356 115 11 chr21 15216088 15216262 -29691308 + L2 LINE L2 3117 3308 -5 1714 142 31 3 chr21 15216312 15216600 -29690970 - THE1C LTR MaLR 0 375 80 963 183 48 11 chr21 15216598 15216784 -29690786 - THE1C LTR MaLR -182 193 1 * 441 264 101 68 chr21 15216929 15217346 -29690224 - MLT1H LTR MaLR 0 595 118 928 252 96 62 chr21 15217362 15217747 -29689823 + MLT2B1 LTR ERVL 22 419 -101 227 167 56 19 chr21 15217783 15217837 -29689733 + (CATATA)n Simple_repeat Simple_repeat 5 60 0 24 67 0 0 chr21 15218066 15218111 -29689459 + AT_rich Low_complexity Low_complexity 1 45 0 36 40 0 0 chr21 15218327 15218377 -29689193 + AT_rich Low_complexity Low_complexity 1 50 0 238 218 0 51 chr21 15219539 15219617 -29687953 + T-rich Low_complexity Low_complexity 2 75 0 2118 124 3 3 chr21 15219645 15219943 -29687627 + AluSq SINE Alu 1 298 -15 1280 301 52 26 chr21 15220266 15220907 -29686663 - MLT2F LTR ERVL 0 663 2 871 293 106 46 chr21 15221152 15221626 -29685944 + LTR40a LTR ERVL 3 504 -15 637 314 15 0 chr21 15221721 15221925 -29685645 - ERVL-F LTR ERVL -331 5433 5227 988 115 6 0 chr21 15221932 15222088 -29685482 - L1MA4A LINE L1 -11 6292 6136 11718 183 33 27 chr21 15222094 15224957 -29682613 + L1MA4A LINE L1 2630 5502 -801 1479 112 105 112 chr21 15224957 15225271 -29682299 + AluSx SINE Alu 1 312 0 11718 183 33 27 chr21 15225271 15225905 -29681665 + L1MA4A LINE L1 5502 6131 -172 1427 311 92 21 chr21 15225905 15226567 -29681003 - ERVL-F LTR ERVL -526 5238 4530 824 313 13 0 chr21 15226558 15226788 -29680782 - ERVL-F LTR ERVL -1352 4412 4180 * 371 278 94 5 chr21 15226856 15227091 -29680479 - ERVL-F LTR ERVL -1640 4014 3741 482 290 47 24 chr21 15227143 15227312 -29680258 + MIR SINE MIR 89 261 -1 235 372 32 0 chr21 15227616 15227710 -29679860 + L2 LINE L2 3174 3270 -2 239 273 80 23 chr21 15229514 15229602 -29677968 - MIR3 SINE MIR -8 200 108 366 324 96 41 chr21 15230186 15230405 -29677165 - L1MC/D LINE L1 -2072 5736 5506 2220 115 0 0 chr21 15231548 15231860 -29675710 - AluSx SINE Alu 0 312 1 2495 80 122 5 chr21 15231967 15232368 -29675202 + LTR7 LTR ERV1 1 448 -2 15798 100 16 19 chr21 15232370 15235249 -29672321 + HERVH LTR ERV1 1 2995 -4718 6225 76 6 2 chr21 15235228 15236079 -29671491 + HERVH LTR ERV1 3140 3993 -3720 * 4325 142 0 3 chr21 15236081 15236745 -29670825 + HERVH LTR ERV1 4488 5149 -2564 1280 137 38 0 chr21 15236746 15236958 -29670612 + HERVH LTR ERV1 5600 5819 -1894 * 2346 100 48 13 chr21 15236956 15237335 -29670235 + HERVH LTR ERV1 7322 7713 0 2528 84 119 7 chr21 15237335 15237738 -29669832 + LTR7 LTR ERV1 1 448 -2 23 86 0 0 chr21 15238540 15238598 -29668972 + AT_rich Low_complexity Low_complexity 1 58 0 3337 35 12 0 chr21 15239336 15239739 -29667831 + L1PA3 LINE L1 5745 6152 -3 1498 215 16 50 chr21 15240544 15240921 -29666649 + MLT1A2 LTR MaLR 11 374 0 1425 243 22 3 chr21 15241933 15242254 -29665316 + MER58B DNA MER1_type 1 327 -14 222 382 134 0 chr21 15242782 15242939 -29664631 - L2 LINE L2 -960 2354 2177 314 268 80 36 chr21 15243325 15243463 -29664107 + Zaphod DNA AcHobo 2 145 -3886 795 197 0 0 chr21 15243519 15243656 -29663914 + MSTD LTR MaLR 3 139 -257 1142 162 6 0 chr21 15243671 15243850 -29663720 + AluJb SINE Alu 131 310 -2 905 186 69 14 chr21 15243891 15244104 -29663466 + MSTD LTR MaLR 212 396 0 8852 222 88 55 chr21 15244104 15244828 -29662742 + Zaphod DNA AcHobo 238 936 -3095 492 231 66 41 chr21 15244828 15244949 -29662621 + FLAM_A SINE Alu 2 125 -8 8852 222 88 55 chr21 15244949 15246756 -29660814 + Zaphod DNA AcHobo 936 2682 -1349 1802 138 7 4 chr21 15246756 15247025 -29660545 + AluSx SINE Alu 33 302 -10 8852 222 88 55 chr21 15247025 15247043 -29660527 + Zaphod DNA AcHobo 2682 2698 -1333 413 189 278 0 chr21 15247043 15247133 -29660437 + FLAM_A SINE Alu 1 115 -18 219 69 0 0 chr21 15247133 15247162 -29660408 + (TGAA)n Simple_repeat Simple_repeat 1 29 0 8852 222 88 55 chr21 15247162 15248281 -29659289 + Zaphod DNA AcHobo 2697 4031 0 243 152 0 0 chr21 15248446 15248492 -29659078 + T-rich Low_complexity Low_complexity 1 46 0 508 252 36 112 chr21 15248696 15248946 -29658624 - LTR33 LTR ERVL -290 231 1 24 0 0 0 chr21 15249154 15249178 -29658392 + AT_rich Low_complexity Low_complexity 1 24 0 2122 100 7 0 chr21 15249215 15249495 -29658075 + AluSq SINE Alu 15 296 -17 838 339 44 15 chr21 15249640 15250030 -29657540 - LTR16A LTR ERVL -34 416 16 1169 355 27 17 chr21 15250171 15250765 -29656805 - HERVL LTR ERVL -2104 3550 2951 1537 114 18 4 chr21 15250958 15251185 -29656385 - MER30 DNA MER1_type 0 230 1 222 323 0 0 chr21 15251249 15251311 -29656259 + MER5A DNA MER1_type 128 189 0 314 362 73 26 chr21 15252016 15252400 -29655170 - LTR33 LTR ERVL -101 420 19 300 357 73 63 chr21 15252683 15252983 -29654587 - L2 LINE L2 -35 3237 2935 14103 195 24 33 chr21 15253594 15254232 -29653338 - L1MA4 LINE L1 -3 6479 5837 1880 156 3 3 chr21 15254232 15254539 -29653031 - AluSx SINE Alu -5 307 1 14103 195 24 33 chr21 15254539 15254894 -29652676 - L1MA4 LINE L1 -645 5837 5480 5197 55 8 5 chr21 15254894 15255565 -29652005 - L1PA7 LINE L1 -1 6153 5481 1454 188 30 20 chr21 15255565 15255863 -29651707 - AluSx SINE Alu -11 301 1 14103 195 24 33 chr21 15255863 15260532 -29647038 - L1MA4 LINE L1 -1001 5481 842 189 0 0 0 chr21 15260532 15260553 -29647017 + (TG)n Simple_repeat Simple_repeat 2 22 0 14103 195 24 33 chr21 15260553 15261386 -29646184 - L1MA4 LINE L1 -5640 842 3 2363 68 7 3 chr21 15261782 15262091 -29645479 + AluY SINE Alu 1 310 -1 231 88 0 0 chr21 15262162 15262196 -29645374 + (A)n Simple_repeat Simple_repeat 1 34 0 1028 162 0 0 chr21 15262880 15263047 -29644523 + MLT1B LTR MaLR 2 168 -222 21338 159 28 19 chr21 15263061 15267995 -29639575 + L1MA3 LINE L1 14 5047 -2677 2429 84 0 0 chr21 15267995 15268304 -29639266 + AluY SINE Alu 2 310 -1 21338 159 28 19 chr21 15268304 15271004 -29636566 + L1MA3 LINE L1 5047 7722 -2 313 151 0 0 chr21 15271025 15271078 -29636492 + L1MB8 LINE L1 6126 6178 0 972 181 6 0 chr21 15271155 15271326 -29636244 + MLT1B LTR MaLR 219 390 0 2143 121 3 0 chr21 15271726 15272024 -29635546 - AluSx SINE Alu -13 299 1 278 232 72 0 chr21 15272502 15272571 -29634999 + MIR SINE MIR 140 213 -49 2013 243 38 16 chr21 15272603 15273106 -29634464 - LTR40a LTR ERVL -5 514 1 410 236 45 11 chr21 15273440 15273529 -29634041 + MER58A DNA MER1_type 1 92 -15 1038 174 35 5 chr21 15273534 15273735 -29633835 - L1PA16 LINE L1 -4 6162 5956 712 215 38 25 chr21 15273760 15273918 -29633652 + MER58A DNA MER1_type 65 224 0 2373 149 29 7 chr21 15273947 15274363 -29633207 + L1PA16 LINE L1 5729 6153 -13 1693 161 0 4 chr21 15275769 15276036 -29631534 - AluJo SINE Alu -44 268 3 2116 163 51 22 chr21 15276227 15276639 -29630931 - MSTB LTR MaLR -2 424 1 3513 234 153 40 chr21 15276833 15278245 -29629325 + L1MC4 LINE L1 6458 8028 -14 5878 132 80 2 chr21 15278423 15279723 -29627847 - L1MA1 LINE L1 -7 7316 5930 * 5935 214 74 19 chr21 15279721 15281317 -29626253 - L1 LINE L1 -815 5331 3649 342 197 28 0 chr21 15281346 15281417 -29626153 + L1M4 LINE L1 474 546 -5996 2135 250 29 17 chr21 15281438 15282097 -29625473 + L1M4 LINE L1 4639 5305 -1339 1995 129 0 0 chr21 15282103 15282423 -29625147 - AluSg SINE Alu 0 320 1 502 209 9 9 chr21 15282433 15282538 -29625032 - L1MA1 LINE L1 -1237 5930 5826 2144 234 25 12 chr21 15282539 15283053 -29624517 - L1MA1 LINE L1 -3402 3765 3245 6552 217 40 23 chr21 15283063 15285438 -29622132 - L1MA1 LINE L1 -3970 3198 809 235 186 0 0 chr21 15288635 15288678 -29618892 - MSTB1 LTR MaLR -13 419 377 353 178 12 31 chr21 15288704 15288867 -29618703 + (TATAA)n Simple_repeat Simple_repeat 5 164 0 429 179 57 46 chr21 15288892 15289286 -29618284 + (CATTA)n Simple_repeat Simple_repeat 1 398 0 * 437 190 27 54 chr21 15289215 15289399 -29618171 + (TTATA)n Simple_repeat Simple_repeat 1 179 0 448 137 16 33 chr21 15289413 15289595 -29617975 + (TATAA)n Simple_repeat Simple_repeat 1 179 0 333 187 0 36 chr21 15289653 15289819 -29617751 + (CATAA)n Simple_repeat Simple_repeat 5 164 0 413 176 0 34 chr21 15289870 15290166 -29617404 + (TATAA)n Simple_repeat Simple_repeat 1 285 0 376 119 17 0 chr21 15290166 15290225 -29617345 - MSTB1 LTR MaLR -372 60 1 609 120 55 0 chr21 15290276 15290568 -29617002 + (TATAG)n Simple_repeat Simple_repeat 1 307 0 203 118 44 29 chr21 15290568 15290636 -29616934 + (CTATA)n Simple_repeat Simple_repeat 2 70 0 399 48 102 24 chr21 15290639 15290806 -29616764 + (TA)n Simple_repeat Simple_repeat 1 180 0 338 160 19 64 chr21 15290807 15290963 -29616607 + (TTATA)n Simple_repeat Simple_repeat 1 149 0 439 96 51 40 chr21 15290963 15291140 -29616430 + (TATAA)n Simple_repeat Simple_repeat 1 179 0 21 57 0 0 chr21 15291140 15291175 -29616395 + AT_rich Low_complexity Low_complexity 1 35 0 282 116 0 0 chr21 15291183 15291226 -29616344 + MSTB1 LTR MaLR 377 419 -13 2020 144 49 44 chr21 15291243 15291610 -29615960 - MSTB1 LTR MaLR -63 369 1 259 271 124 16 chr21 15292439 15292568 -29615002 - MIR SINE MIR -73 189 47 471 290 49 19 chr21 15292573 15292735 -29614835 + MIR SINE MIR 20 186 -76 307 82 41 0 chr21 15293288 15293337 -29614233 - Alu SINE Alu -6 296 246 938 167 0 0 chr21 15293337 15293481 -29614089 - AluJ SINE Alu -33 279 136 329 82 82 0 chr21 15293491 15293564 -29614006 + CT-rich Low_complexity Low_complexity 2 80 0 838 160 0 0 chr21 15293566 15293697 -29613873 - AluJ SINE Alu -169 133 3 21 0 0 0 chr21 15294452 15294473 -29613097 + AT_rich Low_complexity Low_complexity 1 21 0 414 0 0 0 chr21 15295144 15295190 -29612380 + (CA)n Simple_repeat Simple_repeat 2 47 0 635 272 94 13 chr21 15295307 15295531 -29612039 - MIR SINE MIR 0 262 21 697 313 96 21 chr21 15295709 15295790 -29611780 + LTR41 LTR ERVL 1 75 -698 2083 171 26 0 chr21 15295790 15296169 -29611401 - MLT1B LTR MaLR -1 389 1 697 313 96 21 chr21 15296169 15296505 -29611065 + LTR41 LTR ERVL 75 449 -324 362 207 116 167 chr21 15296602 15297052 -29610518 + LTR41 LTR ERVL 337 763 -10 253 239 0 0 chr21 15297126 15297193 -29610377 + L1M4 LINE L1 4171 4237 -1909 494 216 201 0 chr21 15297614 15297753 -29609817 + MER58B DNA MER1_type 46 338 -3 194 246 18 18 chr21 15297761 15297818 -29609752 - L2 LINE L2 -1335 1979 1923 21 36 0 0 chr21 15298574 15298602 -29608968 + AT_rich Low_complexity Low_complexity 1 28 0 2156 248 45 24 chr21 15298610 15299351 -29608219 + L1M4 LINE L1 3289 4044 -2102 2062 75 0 0 chr21 15299674 15299942 -29607628 - L1PA8 LINE L1 -1 6171 5904 21 82 0 0 chr21 15300521 15300570 -29607000 + AT_rich Low_complexity Low_complexity 1 49 0 22 35 0 0 chr21 15301140 15301169 -29606401 + AT_rich Low_complexity Low_complexity 1 29 0 23 33 0 0 chr21 15301313 15301343 -29606227 + AT_rich Low_complexity Low_complexity 1 30 0 22 35 0 0 chr21 15301782 15301811 -29605759 + AT_rich Low_complexity Low_complexity 1 29 0 21 36 0 0 chr21 15301833 15301861 -29605709 + AT_rich Low_complexity Low_complexity 1 28 0 524 290 176 30 chr21 15303658 15303997 -29603573 - MLT1J2 LTR MaLR 0 450 60 13867 185 32 2 chr21 15304520 15307942 -29599628 - L1 LINE L1 -1026 6539 3017 613 182 14 136 chr21 15308591 15308805 -29598765 - MER53 DNA DNA 0 189 2 395 398 11 6 chr21 15309395 15309576 -29597994 - LTR16C LTR ERVL -4 487 306 1497 200 29 101 chr21 15310236 15310647 -29596923 + MLT2D LTR ERVL 3 479 -41 213 197 40 0 chr21 15310679 15310755 -29596815 + (TA)n Simple_repeat Simple_repeat 2 80 0 22 0 0 0 chr21 15311725 15311747 -29595823 + AT_rich Low_complexity Low_complexity 1 22 0 416 378 27 0 chr21 15312984 15313132 -29594438 - L2 LINE L2 -2079 1235 1084 1365 270 276 11 chr21 15313269 15314070 -29593500 + L1ME1 LINE L1 38 1050 -5346 * 1660 254 58 67 chr21 15314068 15314598 -29592972 + L1ME1 LINE L1 2742 3276 -2939 201 74 0 0 chr21 15314598 15314625 -29592945 + (CA)n Simple_repeat Simple_repeat 2 28 0 192 40 0 0 chr21 15314634 15314659 -29592911 + (GA)n Simple_repeat Simple_repeat 2 26 0 1660 254 58 67 chr21 15314659 15315040 -29592530 + L1ME1 LINE L1 3284 3654 -2561 2517 243 95 38 chr21 15315076 15315335 -29592235 + L1ME1 LINE L1 3781 4024 -2191 1455 234 103 21 chr21 15315335 15315800 -29591770 + MLT1D LTR MaLR 1 503 -2 2517 243 95 38 chr21 15315800 15316364 -29591206 + L1ME1 LINE L1 4024 4691 -1524 739 286 14 23 chr21 15316364 15316581 -29590989 - MER58C DNA MER1_type 0 215 1 2517 243 95 38 chr21 15316581 15316915 -29590655 + L1ME1 LINE L1 4691 5005 -1210 2028 139 48 23 chr21 15317025 15317378 -29590192 - THE1B LTR MaLR -2 362 1 347 267 0 0 chr21 15317404 15317494 -29590076 + L1ME1 LINE L1 5209 5298 -917 702 267 0 0 chr21 15317570 15317716 -29589854 + MER58B DNA MER1_type 196 341 0 2728 232 27 68 chr21 15317727 15318659 -29588911 + L1ME1 LINE L1 5337 6230 -5 272 361 83 12 chr21 15318785 15318954 -29588616 + MER5A DNA MER1_type 9 189 0 249 180 0 0 chr21 15322010 15322060 -29585510 + T-rich Low_complexity Low_complexity 1 50 0 2091 126 0 7 chr21 15322466 15322768 -29584802 + AluSg SINE Alu 1 300 -10 3038 160 10 12 chr21 15323310 15323828 -29583742 + Tigger1 DNA MER2_type 31 547 -1871 6260 109 0 7 chr21 15323828 15325735 -29581835 + L1PA12 LINE L1 4261 6165 -3 2407 117 28 17 chr21 15327420 15327778 -29579792 + THE1B LTR MaLR 1 362 -2 912 135 0 0 chr21 15328516 15328664 -29578906 + (GAAA)n Simple_repeat Simple_repeat 2 149 0 279 173 0 0 chr21 15328664 15328716 -29578854 + G-rich Low_complexity Low_complexity 2 53 0 270 295 16 21 chr21 15328842 15328950 -29578620 - MIR SINE MIR -78 130 24 232 313 9 54 chr21 15329343 15329455 -29578115 + MIR3 SINE MIR 56 162 -46 229 167 17 17 chr21 15330831 15330891 -29576679 + GA-rich Low_complexity Low_complexity 1 60 0 692 194 7 0 chr21 15332013 15332168 -29575402 - MER3 DNA MER1_type 0 2624 2469 322 221 44 0 chr21 15332166 15332234 -29575336 - MER3 DNA MER1_type -92 117 47 * 243 170 0 0 chr21 15333059 15333106 -29574464 + (AATTG)n Simple_repeat Simple_repeat 3 49 0 2928 294 89 16 chr21 15333173 15334742 -29572828 + L1 LINE L1 3658 5341 -805 6238 176 52 43 chr21 15334746 15335704 -29571866 + L1PA8A LINE L1 5134 6081 -1704 204 40 0 0 chr21 15335704 15335729 -29571841 + (TAAAA)n Simple_repeat Simple_repeat 1 25 0 6238 176 52 43 chr21 15335729 15337366 -29570204 + L1PA8A LINE L1 6081 7769 -16 2024 147 0 3 chr21 15337372 15337686 -29569884 + AluSp SINE Alu 1 313 0 522 348 156 31 chr21 15337924 15338220 -29569350 + L2 LINE L2 1711 1968 -1304 273 29 0 0 chr21 15338220 15338254 -29569316 + (TG)n Simple_repeat Simple_repeat 2 35 0 522 348 156 31 chr21 15338254 15338268 -29569302 + L2 LINE L2 1968 1979 -1293 189 0 0 0 chr21 15338268 15338289 -29569281 + (GA)n Simple_repeat Simple_repeat 2 22 0 522 348 156 31 chr21 15338289 15339151 -29568419 + L2 LINE L2 1979 3081 -191 336 148 0 0 chr21 15339166 15339227 -29568343 + (TC)n Simple_repeat Simple_repeat 1 61 0 218 182 0 0 chr21 15339357 15339401 -29568169 + (TGGA)n Simple_repeat Simple_repeat 3 46 0 25 0 0 0 chr21 15339440 15339465 -29568105 + AT_rich Low_complexity Low_complexity 1 25 0 1945 96 48 0 chr21 15340339 15340658 -29566912 + AluSx SINE Alu 1 332 0 21 71 0 0 chr21 15341442 15341484 -29566086 + AT_rich Low_complexity Low_complexity 1 42 0 376 126 0 165 chr21 15342955 15343082 -29564488 + L1MA8 LINE L1 6004 6109 -182 940 245 14 0 chr21 15344597 15344809 -29562761 - MER20 DNA MER1_type -3 216 2 266 345 113 28 chr21 15344840 15344982 -29562588 + MER5A DNA MER1_type 35 188 -1 2192 97 0 6 chr21 15345287 15345598 -29561972 + AluY SINE Alu 1 309 -2 963 157 17 23 chr21 15345613 15345785 -29561785 + AluSg/x SINE Alu 127 297 -13 22 56 0 0 chr21 15346635 15346671 -29560899 + AT_rich Low_complexity Low_complexity 1 36 0 759 279 99 17 chr21 15346742 15347116 -29560454 + L1MC4a LINE L1 5260 5659 -512 1250 205 97 148 chr21 15347145 15347741 -29559829 - MLT1E2 LTR MaLR 0 626 61 621 267 25 43 chr21 15347799 15348080 -29559490 + L1MC4a LINE L1 5677 5952 -1856 1500 207 29 100 chr21 15348855 15349275 -29558295 - MLT1B LTR MaLR 0 390 1 762 11 0 0 chr21 15349748 15349835 -29557735 + (AATAG)n Simple_repeat Simple_repeat 5 91 0 1926 158 33 43 chr21 15350601 15350804 -29556766 - MLT1A1 LTR MaLR 0 365 166 2183 128 0 0 chr21 15350804 15351110 -29556460 + AluSx SINE Alu 3 308 -4 1926 158 33 43 chr21 15351110 15351274 -29556296 - MLT1A1 LTR MaLR -199 166 2 24 0 0 0 chr21 15351500 15351524 -29556046 + AT_rich Low_complexity Low_complexity 1 24 0 25788 76 10 6 chr21 15351990 15358093 -29549477 + L1PA6 LINE L1 22 6154 0 21 0 0 0 chr21 15358093 15358114 -29549456 + AT_rich Low_complexity Low_complexity 1 21 0 2103 122 0 39 chr21 15358132 15358443 -29549127 - AluSg SINE Alu -11 299 1 222 356 15 23 chr21 15358469 15358601 -29548969 + MER5A DNA MER1_type 18 148 -41 1679 130 0 4 chr21 15359120 15359374 -29548196 - L1PA15 LINE L1 -4 6161 5909 252 0 0 0 chr21 15361172 15361200 -29546370 + (TC)n Simple_repeat Simple_repeat 1 28 0 658 272 51 28 chr21 15363310 15363564 -29544006 - Charlie8 DNA MER1_type -2156 261 2 25 0 0 0 chr21 15363937 15363962 -29543608 + AT_rich Low_complexity Low_complexity 1 25 0 203 217 33 0 chr21 15364610 15364670 -29542900 + T-rich Low_complexity Low_complexity 1 62 0 2424 78 7 0 chr21 15364750 15365059 -29542511 - AluY SINE Alu 0 311 1 459 322 141 31 chr21 15365075 15365557 -29542013 - MLT1L LTR MaLR -80 535 1 1981 174 59 45 chr21 15365822 15366246 -29541324 - MSTB1 LTR MaLR -2 430 1 373 235 0 0 chr21 15366976 15367057 -29540513 - MER52A LTR ERV1 -82 1673 1593 * 1181 277 82 74 chr21 15367049 15367855 -29539715 - MER52A LTR ERV1 -281 1474 663 238 336 82 0 chr21 15369143 15369265 -29538305 - MIR3 SINE MIR -31 177 46 21 57 0 0 chr21 15371790 15371825 -29535745 + AT_rich Low_complexity Low_complexity 1 35 0 5135 177 27 20 chr21 15371842 15372486 -29535084 - L1PA16 LINE L1 -21 6145 5507 2354 106 0 0 chr21 15372486 15372798 -29534772 - AluSx SINE Alu 0 312 1 5135 177 27 20 chr21 15372798 15374002 -29533568 - L1PA16 LINE L1 -659 5507 4288 2309 228 12 8 chr21 15373993 15374589 -29532981 - L1 LINE L1 -1628 4518 3921 * 377 273 74 0 chr21 15376367 15376488 -29531082 - L2 LINE L2 -229 3043 2914 234 252 55 10 chr21 15376608 15376713 -29530857 + MLT1I LTR MaLR 32 148 -261 260 258 23 94 chr21 15376865 15376993 -29530577 + MLT1H LTR MaLR 430 548 -1 25 31 0 0 chr21 15377106 15377138 -29530432 + AT_rich Low_complexity Low_complexity 1 32 0 592 245 42 42 chr21 15377226 15377442 -29530128 - L1MA9 LINE L1 -39 6273 6058 6466 76 18 10 chr21 15379844 15380772 -29526798 + L1PA10 LINE L1 5223 6157 -11 1378 221 17 40 chr21 15382695 15383048 -29524522 - MLT1A1 LTR MaLR -2 363 19 21 0 0 0 chr21 15383107 15383128 -29524442 + AT_rich Low_complexity Low_complexity 1 21 0 198 268 0 0 chr21 15383466 15383507 -29524063 - L3b LINE CR1 -13 1570 1530 1984 311 100 17 chr21 15383999 15385009 -29522561 - HERV16 LTR ERVL -3902 1094 1 676 305 82 72 chr21 15385030 15385433 -29522137 - LTR16A LTR ERVL -23 427 21 1497 294 89 39 chr21 15385467 15386533 -29521037 + L1MC4 LINE L1 6920 8038 -4 335 311 0 0 chr21 15386953 15387043 -29520527 + L1MC4 LINE L1 6614 6703 -1339 * 349 300 0 0 chr21 15386965 15387055 -29520515 - L1MC4 LINE L1 -1339 6703 6614 635 172 90 0 chr21 15387076 15387198 -29520372 + FLAM_A SINE Alu 1 133 0 2372 123 5 21 chr21 15388627 15389008 -29518562 - THE1C LTR MaLR 0 375 1 2013 117 29 0 chr21 15390241 15390555 -29517015 - AluSx SINE Alu 0 322 1 2070 135 7 0 chr21 15390885 15391188 -29516382 + AluSq SINE Alu 1 305 -8 505 192 16 0 chr21 15391188 15391313 -29516257 + GA-rich Low_complexity Low_complexity 1 127 0 1698 218 60 3 chr21 15391428 15391638 -29515932 - MLT1F LTR MaLR -5 537 340 2626 163 5 0 chr21 15391638 15392068 -29515502 + MSTB1 LTR MaLR 1 432 0 1698 218 60 3 chr21 15392068 15392370 -29515200 - MLT1F LTR MaLR -202 340 1 275 291 78 82 chr21 15392370 15392576 -29514994 - L2 LINE L2 -967 2347 2143 1042 212 57 79 chr21 15392996 15393364 -29514206 - MLT1A2 LTR MaLR -13 361 2 247 293 114 29 chr21 15393928 15394068 -29513502 - MIR SINE MIR -110 152 1 22 0 0 0 chr21 15394589 15394611 -29512959 + AT_rich Low_complexity Low_complexity 1 22 0 369 314 119 65 chr21 15397481 15397835 -29509735 + L1M4 LINE L1 3791 4163 -1983 976 175 0 0 chr21 15397835 15397995 -29509575 + FRAM SINE Alu 2 161 -15 331 288 68 14 chr21 15398006 15398152 -29509418 + L1M4 LINE L1 4166 4319 -1827 898 230 13 44 chr21 15398187 15398413 -29509157 + MER20 DNA MER1_type 1 219 0 36 82 0 0 chr21 15398598 15398683 -29508887 + AT_rich Low_complexity Low_complexity 1 85 0 336 236 42 85 chr21 15399952 15400117 -29507453 - MER39 LTR ERV1 0 707 550 883 203 212 0 chr21 15400135 15400347 -29507223 - AluJo SINE Alu -17 295 39 735 207 43 117 chr21 15400358 15400658 -29506912 - MER39 LTR ERV1 -170 537 260 402 151 0 0 chr21 15400756 15400829 -29506741 + (CA)n Simple_repeat Simple_repeat 1 73 0 1881 168 36 78 chr21 15401441 15401888 -29505682 + MSTB1 LTR MaLR 1 428 -4 201 129 0 0 chr21 15402108 15402139 -29505431 + (TTTTTG)n Simple_repeat Simple_repeat 6 36 0 22 0 0 0 chr21 15402325 15402347 -29505223 + AT_rich Low_complexity Low_complexity 1 22 0 855 0 0 0 chr21 15403007 15403102 -29504468 + (TA)n Simple_repeat Simple_repeat 1 95 0 351 0 0 0 chr21 15403101 15403140 -29504430 + (GA)n Simple_repeat Simple_repeat 2 40 0 * 207 0 0 0 chr21 15403156 15403179 -29504391 + (TCTA)n Simple_repeat Simple_repeat 4 26 0 676 298 60 5 chr21 15404100 15404318 -29503252 - MIR SINE MIR -32 230 1 27 0 0 0 chr21 15404782 15404809 -29502761 + AT_rich Low_complexity Low_complexity 1 27 0 182 227 45 0 chr21 15405254 15405298 -29502272 + L2 LINE L2 3214 3259 -13 561 181 13 7 chr21 15405422 15405571 -29501999 + GA-rich Low_complexity Low_complexity 3 152 0 3146 67 9 20 chr21 15405571 15406018 -29501552 + LTR7 LTR ERV1 1 442 -8 209 159 45 0 chr21 15406022 15406066 -29501504 + GA-rich Low_complexity Low_complexity 2 47 0 1668 223 40 3 chr21 15407915 15408291 -29499279 - MLT1B LTR MaLR 0 390 1 40276 40 23 1 chr21 15408351 15414368 -29493202 + L1PA3 LINE L1 1 6155 0 2136 164 83 8 chr21 15414601 15414997 -29492573 + MSTB LTR MaLR 1 426 0 1662 162 18 6 chr21 15416001 15416329 -29491241 + L1MA4A LINE L1 5966 6297 -6 23 78 0 0 chr21 15416405 15416456 -29491114 + AT_rich Low_complexity Low_complexity 1 51 0 352 293 73 40 chr21 15417052 15417202 -29490368 - L1ME4a LINE L1 -35 6086 5932 25 31 0 0 chr21 15417281 15417313 -29490257 + AT_rich Low_complexity Low_complexity 1 32 0 729 257 22 0 chr21 15417336 15417515 -29490055 - MLT2B1 LTR ERVL 0 520 338 2915 16 0 0 chr21 15417898 15418244 -29489326 + AluYb8 SINE Alu 1 346 0 184 273 52 26 chr21 15418870 15418947 -29488623 + L2 LINE L2 3160 3238 -75 1568 217 46 11 chr21 15419177 15419546 -29488024 + MER70B LTR ERVL 93 474 -104 288 204 19 0 chr21 15419577 15419631 -29487939 - MLT1D LTR MaLR -446 59 5 2961 216 54 11 chr21 15420110 15420408 -29487162 + MER45B DNA AcHobo 243 527 -1054 2612 83 11 0 chr21 15420408 15420759 -29486811 + THE1A LTR MaLR 1 355 0 2961 216 54 11 chr21 15420759 15421215 -29486355 + MER45B DNA AcHobo 527 1030 -10 21 0 0 0 chr21 15421445 15421466 -29486104 + AT_rich Low_complexity Low_complexity 1 21 0 11577 205 114 20 chr21 15422131 15426861 -29480709 + L1PA11 LINE L1 1 5963 -1621 2514 91 0 19 chr21 15426861 15427223 -29480347 - THE1A LTR MaLR 0 355 1 10808 110 1 1 chr21 15427223 15428779 -29478791 - THE1A-int LTR MaLR -25 1555 1 2553 107 3 0 chr21 15428779 15429133 -29478437 - THE1A LTR MaLR 0 355 1 5553 108 34 25 chr21 15429133 15430789 -29476781 + L1PA11 LINE L1 5959 7612 0 25 0 0 0 chr21 15431170 15431195 -29476375 + AT_rich Low_complexity Low_complexity 1 25 0 899 122 96 0 chr21 15431210 15431366 -29476204 + L1PA13 LINE L1 5974 6144 -19 2120 110 7 0 chr21 15432567 15432848 -29474722 + AluSq SINE Alu 1 283 -30 3873 168 22 7 chr21 15433067 15433801 -29473769 - L1MB1 LINE L1 0 6168 5424 1229 178 9 9 chr21 15433821 15434034 -29473536 + AluJb SINE Alu 87 299 -13 448 64 0 77 chr21 15434037 15434115 -29473455 + L1M2 LINE L1 5363 5434 -878 261 0 0 0 chr21 15434330 15434359 -29473211 + (T)n Simple_repeat Simple_repeat 1 29 0 464 292 251 17 chr21 15435662 15436145 -29471425 + L2 LINE L2 1363 1958 -1356 311 260 51 117 chr21 15436162 15436358 -29471212 - L2 LINE L2 0 3313 3131 1295 255 65 19 chr21 15436373 15436788 -29470782 - MER70B LTR ERVL -144 434 1 1906 287 225 17 chr21 15436803 15438008 -29469562 - L2 LINE L2 -192 3121 1657 494 245 56 21 chr21 15438010 15438153 -29469417 + L2 LINE L2 2397 2544 -770 731 221 81 81 chr21 15438191 15438675 -29468895 + L1MC5 LINE L1 7193 7676 -285 757 144 8 8 chr21 15438691 15438855 -29468715 - AluJ SINE Alu 0 329 166 675 154 0 0 chr21 15438853 15438957 -29468613 - AluJ SINE Alu -203 109 6 * 277 271 104 36 chr21 15438977 15439169 -29468401 + L1MC5 LINE L1 7697 7901 -60 3623 53 0 7 chr21 15439278 15439729 -29467841 + LTR7 LTR ERV1 1 448 -2 18728 104 10 18 chr21 15439731 15442749 -29464821 + HERVH LTR ERV1 1 2995 -4718 748 160 49 0 chr21 15442728 15442872 -29464698 + HERVH LTR ERV1 3140 3290 -4423 * 10659 102 2 42 chr21 15442862 15444589 -29462981 + HERVH LTR ERV1 3492 5149 -2564 1339 120 19 0 chr21 15444590 15444806 -29462764 + HERVH LTR ERV1 5600 5819 -1894 2365 84 42 13 chr21 15444806 15445185 -29462385 + HERVH LTR ERV1 7324 7713 0 2835 88 2 7 chr21 15445185 15445595 -29461975 + LTR7 LTR ERV1 1 408 -42 182 296 57 34 chr21 15446643 15446731 -29460839 - MIR SINE MIR -57 205 116 852 112 154 7 chr21 15447626 15447769 -29459801 + AluSp SINE Alu 137 300 -13 26 0 0 0 chr21 15448521 15448547 -29459023 + AT_rich Low_complexity Low_complexity 1 26 0 1097 335 22 34 chr21 15449642 15450231 -29457339 + L1PA13 LINE L1 3 584 -6203 408 320 13 7 chr21 15450259 15450412 -29457158 + L1PA13 LINE L1 1358 1511 -5276 8865 232 23 24 chr21 15451235 15452603 -29454967 + L1PA13 LINE L1 1401 2769 -4028 2222 124 7 0 chr21 15452603 15452910 -29454660 + AluSg SINE Alu 1 309 -1 8865 232 23 24 chr21 15452910 15455128 -29452442 + L1PA13 LINE L1 2769 5071 -1726 2358 64 0 14 chr21 15455158 15455455 -29452115 + AluY SINE Alu 16 308 -3 4077 147 8 0 chr21 15455457 15456124 -29451446 + L1PA16 LINE L1 5491 6162 -4 405 250 76 0 chr21 15456281 15456413 -29451157 + Charlie7 DNA MER1_type 1 142 -2470 274 190 120 49 chr21 15456495 15456596 -29450974 + FLAM_C SINE Alu 1 107 -26 234 62 0 0 chr21 15456651 15456683 -29450887 + (GGAA)n Simple_repeat Simple_repeat 2 33 0 936 227 0 0 chr21 15456685 15456857 -29450713 + AluJb SINE Alu 136 307 -5 255 152 0 0 chr21 15457110 15457156 -29450414 + GA-rich Low_complexity Low_complexity 3 48 0 2116 128 3 10 chr21 15457201 15457505 -29450065 + AluSg SINE Alu 1 302 -8 436 381 75 54 chr21 15458117 15458466 -29449104 - L2 LINE L2 0 3272 2917 511 288 59 15 chr21 15458819 15459252 -29448318 - L1MCc LINE L1 -4889 1534 1120 732 298 59 32 chr21 15460250 15460589 -29446981 + LTR16C LTR ERVL 131 478 -13 189 107 0 0 chr21 15461045 15461073 -29446497 + (TG)n Simple_repeat Simple_repeat 2 29 0 907 194 26 31 chr21 15462035 15462226 -29445344 + MER20 DNA MER1_type 29 218 -1 185 239 0 22 chr21 15463790 15463836 -29443734 - MIR SINE MIR -112 150 106 10032 170 46 37 chr21 15464432 15464767 -29442803 + L1M1 LINE L1 1868 2199 -5366 2405 94 3 0 chr21 15464767 15465076 -29442494 - AluSp SINE Alu -3 310 1 10032 170 46 37 chr21 15465076 15467709 -29439861 + L1M1 LINE L1 2199 4874 -2691 1692 179 0 21 chr21 15467709 15468024 -29439546 + AluSx SINE Alu 1 309 0 10032 170 46 37 chr21 15468024 15468122 -29439448 + L1M1 LINE L1 4874 4970 -2595 * 11294 189 20 11 chr21 15468120 15468176 -29439394 - L1P LINE L1 -1406 4740 4686 2127 140 73 12 chr21 15468176 15468519 -29439051 - THE1B LTR MaLR 0 364 1 11294 189 20 11 chr21 15468519 15470760 -29436810 - L1P LINE L1 -1460 4686 2422 31030 68 3 3 chr21 15470767 15475745 -29431825 + L1PA6 LINE L1 1178 6154 0 1112 249 0 8 chr21 15475992 15476233 -29431337 - MER8 DNA MER2_type 0 239 1 480 334 29 15 chr21 15477921 15478134 -29429436 - MIR SINE MIR -3 259 45 535 299 30 6 chr21 15479049 15479216 -29428354 - FAM SINE Alu -13 172 2 219 309 15 0 chr21 15479607 15479675 -29427895 + L2 LINE L2 3242 3310 -3 909 257 72 87 chr21 15479920 15480473 -29427097 + MLT1H LTR MaLR 1 545 -4 37 52 0 0 chr21 15480742 15480800 -29426770 + AT_rich Low_complexity Low_complexity 1 58 0 772 54 0 0 chr21 15481381 15481473 -29426097 + L1PA3 LINE L1 1 92 -6054 36765 37 27 1 chr21 15481477 15486870 -29420700 + L1PA3 LINE L1 623 6155 0 2529 65 0 0 chr21 15487514 15487820 -29419750 - AluY SINE Alu -5 306 1 459 295 16 0 chr21 15487979 15488101 -29419469 + MLT1I LTR MaLR 67 190 -219 987 205 0 0 chr21 15488483 15488668 -29418902 - L1PB4 LINE L1 -5 6151 5967 203 184 0 0 chr21 15488737 15488775 -29418795 + A-rich Low_complexity Low_complexity 1 38 0 7288 21 9 2 chr21 15490244 15491107 -29416463 - L1PA3 LINE L1 0 6155 5287 1069 58 0 0 chr21 15491106 15491245 -29416325 + L1P LINE L1 1920 2058 -4088 * 32 57 0 0 chr21 15491391 15491444 -29416126 + AT_rich Low_complexity Low_complexity 1 53 0 299 264 21 50 chr21 15491881 15492021 -29415549 - MIR SINE MIR -10 252 117 4421 234 80 64 chr21 15492062 15492125 -29415445 + L1MB7 LINE L1 2046 2107 -4275 2137 123 0 0 chr21 15492125 15492426 -29415144 - AluY SINE Alu -10 301 1 4421 234 80 64 chr21 15492426 15493886 -29413684 + L1MB7 LINE L1 2107 3737 -2645 2186 134 3 0 chr21 15493886 15494192 -29413378 + AluSx SINE Alu 1 307 -5 4421 234 80 64 chr21 15494192 15495203 -29412367 + L1MB7 LINE L1 3737 4730 -1652 4325 147 58 37 chr21 15495194 15496025 -29411545 + L1PB1 LINE L1 728 1575 -6010 * 8950 241 22 9 chr21 15496037 15499018 -29408552 + L1PB1 LINE L1 2804 5803 -1781 299 164 0 0 chr21 15499019 15499080 -29408490 + LTR1B LTR ERV1 1 61 -765 1405 106 55 5 chr21 15499084 15499301 -29408269 - MER52-int LTR ERV1 -4571 2520 2293 * 26119 152 7 11 chr21 15499299 15503389 -29404181 + LTR1B-int LTR ERV1 2527 6601 -490 1496 151 73 0 chr21 15503399 15503658 -29403912 + LTR1B-int LTR ERV1 6745 7022 -69 1488 238 128 61 chr21 15503660 15504370 -29403200 + LTR1B LTR ERV1 69 826 0 5775 161 14 12 chr21 15504370 15506154 -29401416 + L1PB1 LINE L1 5802 7587 -2 4297 189 38 5 chr21 15506161 15507695 -29399875 + L1MB7 LINE L1 4711 6294 -126 4223 165 14 0 chr21 15507708 15508434 -29399136 - L1PB4 LINE L1 -20 6136 5401 592 85 217 0 chr21 15508435 15508541 -29399029 + L1MB7 LINE L1 6276 6404 -16 27 29 0 0 chr21 15508541 15508575 -29398995 + AT_rich Low_complexity Low_complexity 1 34 0 932 260 81 113 chr21 15508804 15509802 -29397768 + MER52A LTR ERV1 640 1755 0 3495 182 55 34 chr21 15509802 15510533 -29397037 + MER52A-int LTR ERV1 2 747 -6344 1408 144 7 88 chr21 15510530 15510814 -29396756 + MER52A-int LTR ERV1 878 1138 -5953 * 2174 151 58 2 chr21 15511130 15511542 -29396028 + LTR19A LTR ERV1 1 435 -51 2042 51 0 0 chr21 15511543 15511796 -29395774 - L1PA5 LINE L1 -204 5950 5698 1473 74 5 10 chr21 15511796 15511999 -29395571 + L1PA5 LINE L1 5953 6154 0 359 85 17 0 chr21 15512002 15512061 -29395509 + LTR19A LTR ERV1 425 484 -2 457 275 38 56 chr21 15512334 15512494 -29395076 - MIR3 SINE MIR -21 187 31 705 109 16 16 chr21 15515681 15515809 -29391761 + (GGAA)n Simple_repeat Simple_repeat 2 129 0 606 339 59 30 chr21 15517663 15517806 -29389764 + HAL1 LINE L1 16 153 -2354 210 37 0 0 chr21 15517806 15517833 -29389737 + (CA)n Simple_repeat Simple_repeat 2 28 0 606 339 59 30 chr21 15517833 15518120 -29389450 + HAL1 LINE L1 153 462 -2045 228 86 0 0 chr21 15518120 15518155 -29389415 + (TAAA)n Simple_repeat Simple_repeat 2 36 0 589 244 83 39 chr21 15518169 15518585 -29388985 - MLT1D LTR MaLR -8 497 15 837 294 143 16 chr21 15518627 15519005 -29388565 + HAL1 LINE L1 492 917 -1590 2882 275 121 34 chr21 15519144 15520783 -29386787 + L1MEc LINE L1 19 1799 -777 535 253 114 81 chr21 15520803 15520946 -29386624 + L1ME1 LINE L1 2911 3048 -3167 1688 217 67 22 chr21 15520946 15521393 -29386177 + MLT1C LTR MaLR 1 467 0 535 253 114 81 chr21 15521393 15521600 -29385970 + L1ME1 LINE L1 3048 3247 -2968 7005 66 1 0 chr21 15521600 15522991 -29384579 + L1PA7 LINE L1 4761 6153 -1 535 253 114 81 chr21 15522991 15523185 -29384385 + L1ME1 LINE L1 3247 3474 -2741 * 2217 217 35 29 chr21 15523169 15523765 -29383805 + L1ME1 LINE L1 4593 5195 -1020 2278 126 8 30 chr21 15523765 15524137 -29383433 - THE1B LTR MaLR 0 364 1 2217 217 35 29 chr21 15524137 15524194 -29383376 + L1ME1 LINE L1 5195 5250 -965 1342 189 36 8 chr21 15524217 15524466 -29383104 - AluJo SINE Alu -56 256 1 2361 249 44 12 chr21 15524484 15525315 -29382255 + L1ME1 LINE L1 5245 6099 -136 326 276 63 29 chr21 15525306 15525545 -29382025 + L1MC4 LINE L1 6983 7229 -813 * 32 0 0 0 chr21 15526506 15526538 -29381032 + AT_rich Low_complexity Low_complexity 1 32 0 390 258 88 82 chr21 15526732 15526914 -29380656 - MER21B LTR ERV1 -125 738 556 971 276 128 49 chr21 15526927 15527318 -29380252 - MER21B LTR ERV1 -421 442 21 253 182 18 0 chr21 15527421 15527476 -29380094 + MER110A LTR ERV1 83 138 -330 582 287 101 22 chr21 15527589 15527857 -29379713 + MER110 LTR ERV1 195 483 -8 632 161 105 21 chr21 15527962 15528105 -29379465 + LTR40a LTR ERVL 365 519 0 353 305 6 34 chr21 15529592 15529769 -29377801 + GA-rich Low_complexity Low_complexity 3 174 0 1252 209 35 60 chr21 15529982 15530351 -29377219 + MLT1A1 LTR MaLR 4 363 -2 24 0 0 0 chr21 15530460 15530484 -29377086 + AT_rich Low_complexity Low_complexity 1 24 0 1699 121 103 18 chr21 15530563 15530836 -29376734 - MER1B DNA MER1_type 0 339 44 198 319 43 43 chr21 15531148 15531289 -29376281 + L2 LINE L2 2955 3095 -177 474 88 0 0 chr21 15531414 15531482 -29376088 + (TA)n Simple_repeat Simple_repeat 2 69 0 241 305 53 0 chr21 15532905 15533000 -29374570 + LTR16A LTR ERVL 284 383 -67 1094 149 20 5 chr21 15534467 15534662 -29372908 + L1PA16 LINE L1 3 200 -6663 * 11670 118 100 5 chr21 15534654 15536586 -29370984 + L1PA16 LINE L1 625 2740 -4123 * 12370 194 14 16 chr21 15536575 15540181 -29367389 + L1PA16 LINE L1 3310 6882 0 274 326 74 37 chr21 15540268 15540458 -29367112 + MIR SINE MIR 46 242 -20 23 0 0 0 chr21 15540657 15540680 -29366890 + AT_rich Low_complexity Low_complexity 1 23 0 1184 181 50 32 chr21 15541182 15541464 -29366106 - L1PB4 LINE L1 -1 6155 5869 10427 181 13 56 chr21 15542058 15542469 -29365101 + L1MA3 LINE L1 2938 3365 -2858 549 0 0 0 chr21 15542469 15542530 -29365040 + (TA)n Simple_repeat Simple_repeat 2 62 0 10427 181 13 56 chr21 15542530 15544782 -29362788 + L1MA3 LINE L1 3365 5480 -743 3624 114 15 0 chr21 15544782 15545323 -29362247 + L1PA14 LINE L1 5606 6159 -2 5548 114 2 8 chr21 15545335 15546179 -29361391 + L1MA3 LINE L1 5460 6298 -7 1392 205 52 74 chr21 15546204 15546636 -29360934 - MLT1C LTR MaLR -38 588 8 1821 216 14 116 chr21 15546642 15547193 -29360377 - MLT1C-int LTR MaLR 0 1371 877 2612 204 75 29 chr21 15547267 15548006 -29359564 - MLT1C-int LTR MaLR -477 894 4 280 133 0 22 chr21 15548008 15548053 -29359517 - MLT2C1 LTR ERVL 0 397 354 271 231 0 0 chr21 15548060 15548112 -29359458 - MLT2C1 LTR ERVL -228 169 118 1669 172 3 21 chr21 15548118 15548403 -29359167 + AluJo SINE Alu 2 281 -31 1965 120 15 19 chr21 15548453 15548777 -29358793 + L1MA8 LINE L1 5948 6270 -21 398 267 96 96 chr21 15549380 15549736 -29357834 - L1MC4a LINE L1 -1774 6034 5679 2174 106 10 10 chr21 15550369 15550672 -29356898 - AluSg SINE Alu -7 303 1 206 290 16 16 chr21 15551641 15551703 -29355867 + L2 LINE L2 3211 3272 0 212 304 14 0 chr21 15552219 15552288 -29355282 + L3b LINE CR1 1107 1176 -407 3122 81 2 0 chr21 15552290 15552711 -29354859 + L1P LINE L1 4172 4593 -1553 2099 104 3 7 chr21 15552711 15552998 -29354572 + AluSq SINE Alu 22 307 -6 1937 154 0 6 chr21 15553121 15553432 -29354138 + AluSx SINE Alu 3 311 -1 194 353 190 9 chr21 15553805 15554026 -29353544 + MIR SINE MIR 2 262 0 320 217 0 24 chr21 15554371 15554454 -29353116 + LTR33 LTR ERVL 441 521 0 1489 158 0 14 chr21 15554814 15555092 -29352478 + L1MA4 LINE L1 6020 6293 -7 480 312 93 25 chr21 15555696 15556020 -29351550 - L2 LINE L2 -1063 2251 1906 23 0 0 0 chr21 15556449 15556472 -29351098 + AT_rich Low_complexity Low_complexity 1 23 0 702 295 120 56 chr21 15557216 15557617 -29349953 + LTR16A LTR ERVL 19 457 0 668 270 35 6 chr21 15557617 15557791 -29349779 + HERV16 LTR ERVL 1 179 -4817 29368 110 15 32 chr21 15558008 15564476 -29343094 + L1PA7 LINE L1 1 6469 0 1336 212 13 55 chr21 15564678 15564989 -29342581 + AluJo SINE Alu 1 298 -4 2258 140 6 25 chr21 15565085 15565449 -29342121 + THE1B LTR MaLR 8 364 0 11471 108 2 0 chr21 15565449 15567025 -29340545 + THE1B-int LTR MaLR 1 1580 0 1984 147 46 26 chr21 15567025 15567372 -29340198 + THE1B LTR MaLR 1 354 -10 415 327 26 0 chr21 15567466 15567622 -29339948 + HERV16 LTR ERVL 1776 1935 -3061 180 217 72 72 chr21 15567718 15567787 -29339783 - L2 LINE L2 -65 3248 3180 374 168 147 77 chr21 15568116 15568259 -29339311 + Charlie5 DNA MER1_type 2427 2579 -33 183 406 0 0 chr21 15569949 15570018 -29337552 - MIR SINE MIR -166 96 28 294 264 60 0 chr21 15570580 15570681 -29336889 + L1ME LINE L1 5521 5579 -542 805 314 158 10 chr21 15570685 15571242 -29336328 + L2 LINE L2 2550 3171 -142 189 221 26 65 chr21 15571292 15571369 -29336201 + L2 LINE L2 3146 3219 -94 1086 141 0 6 chr21 15571371 15571541 -29336029 + AluSg/x SINE Alu 136 304 -6 274 277 0 0 chr21 15571544 15571609 -29335961 + L2 LINE L2 3226 3290 -23 377 298 62 69 chr21 15571817 15572122 -29335448 + HAL1 LINE L1 1141 1443 -1064 405 332 128 38 chr21 15572126 15572361 -29335209 + HAL1 LINE L1 1671 1926 -581 1745 72 0 79 chr21 15572442 15572720 -29334850 - L1P LINE L1 -1188 4958 4703 333 311 95 38 chr21 15573551 15573815 -29333755 + HAL1 LINE L1 2228 2506 -1 992 353 69 44 chr21 15573832 15573986 -29333584 - L2 LINE L2 -1300 2014 1865 1760 171 0 35 chr21 15573986 15574302 -29333268 + AluJb SINE Alu 1 305 -7 992 353 69 44 chr21 15574302 15575071 -29332499 - L2 LINE L2 -1449 1865 1068 194 278 111 14 chr21 15575204 15575276 -29332294 - L2 LINE L2 -2254 1060 982 364 343 88 67 chr21 15576390 15576901 -29330669 - L2 LINE L2 -834 2480 1959 26 50 0 0 chr21 15576986 15577026 -29330544 + AT_rich Low_complexity Low_complexity 1 40 0 180 0 0 0 chr21 15578813 15578833 -29328737 + (A)n Simple_repeat Simple_repeat 1 20 0 1789 135 11 11 chr21 15579043 15579351 -29328219 - AluSx SINE Alu 0 310 3 538 231 15 0 chr21 15579780 15579914 -29327656 + L1PB4 LINE L1 6021 6156 0 482 205 232 33 chr21 15579985 15580136 -29327434 + MER5A DNA MER1_type 9 189 0 869 152 0 14 chr21 15584560 15584698 -29322872 + FAM SINE Alu 37 172 -13 23 0 0 0 chr21 15585012 15585035 -29322535 + AT_rich Low_complexity Low_complexity 1 23 0 22 0 0 0 chr21 15587053 15587075 -29320495 + AT_rich Low_complexity Low_complexity 1 22 0 41333 54 6 21 chr21 15589145 15595390 -29312180 + L1PA4 LINE L1 2 6142 -13 490 239 77 76 chr21 15595416 15595626 -29311944 + L1M4b LINE L1 76 598 -6257 437 262 62 108 chr21 15595781 15596151 -29311419 + L1M4b LINE L1 836 1188 -5667 248 75 0 25 chr21 15596265 15596305 -29311265 + (GAAA)n Simple_repeat Simple_repeat 2 40 0 298 242 33 76 chr21 15596307 15596518 -29311052 + L1M4b LINE L1 1240 1441 -5418 12054 199 41 15 chr21 15596521 15598929 -29308641 + L1M1 LINE L1 14 2482 -5083 2447 227 40 30 chr21 15598925 15599822 -29307748 + L1M1 LINE L1 3475 4409 -3156 * 426 187 0 0 chr21 15599822 15599897 -29307673 + THE1C LTR MaLR 301 375 0 7379 121 19 2 chr21 15599897 15600968 -29306602 + THE1C-int LTR MaLR 1 1089 -491 22101 156 15 7 chr21 15600971 15605097 -29302473 + L1P4 LINE L1 1363 5521 -647 699 262 47 14 chr21 15605089 15605303 -29302267 + L1M4b LINE L1 3409 3629 -3328 * 4514 93 9 9 chr21 15605305 15605952 -29301618 + L1PA10 LINE L1 5517 6163 -5 473 215 43 37 chr21 15606020 15606264 -29301306 + L1M4b LINE L1 1563 1906 -5054 928 169 45 0 chr21 15606322 15606500 -29301070 + MER2 DNA MER2_type 159 344 -1 2194 181 56 16 chr21 15606500 15606985 -29300585 + L1MA9 LINE L1 5785 6288 -24 1063 236 47 47 chr21 15607011 15607393 -29300177 + L1M4b LINE L1 4776 5157 -1800 1249 224 0 20 chr21 15607415 15607670 -29299900 + AluJo SINE Alu 1 250 -62 6010 199 15 8 chr21 15607685 15608888 -29298682 + L1PA13 LINE L1 1181 2403 -4394 2419 131 11 0 chr21 15608888 15609248 -29298322 + THE1B LTR MaLR 1 364 0 6010 199 15 8 chr21 15609248 15609340 -29298230 + L1PA13 LINE L1 2403 2493 -4304 9637 41 9 101 chr21 15609342 15610946 -29296624 - SVA Other Other 0 1386 19 239 95 191 0 chr21 15610946 15610988 -29296582 + LTR9B LTR ERV1 88 137 -507 11959 225 26 2 chr21 15611081 15612385 -29295185 + L1PA13 LINE L1 2480 3751 -3046 377 20 20 0 chr21 15612385 15612435 -29295135 + (CA)n Simple_repeat Simple_repeat 2 52 0 11959 225 26 2 chr21 15612435 15613894 -29293676 + L1PA13 LINE L1 3751 5309 -1488 777 179 230 17 chr21 15614770 15615005 -29292565 + LTR12 LTR ERV1 1 285 -429 238 230 58 23 chr21 15615006 15615093 -29292477 + LTR30 LTR ERV1 553 642 -80 677 164 0 0 chr21 15615095 15615199 -29292371 + LTR12 LTR ERV1 481 584 -130 54239 110 29 24 chr21 15615215 15623278 -29284292 + HERV9 LTR ERV1 54 8157 -242 6794 8 0 3 chr21 15623279 15624030 -29283540 - L1HS LINE L1 -1 6154 5406 1785 139 7 0 chr21 15624030 15624304 -29283266 + HERV9 LTR ERV1 8120 8395 -4 228 269 0 0 chr21 15624308 15624360 -29283210 + LTR30 LTR ERV1 1 52 -670 1504 148 302 3 chr21 15624360 15624691 -29282879 + LTR12 LTR ERV1 53 482 -232 1922 152 3 3 chr21 15625248 15625544 -29282026 + AluJo SINE Alu 1 296 -16 2240 185 27 6 chr21 15625629 15626115 -29281455 + L1PA13 LINE L1 5295 5790 -1007 31083 119 9 62 chr21 15626149 15626541 -29281029 + L1PA7 LINE L1 14 425 -5729 252 0 0 0 chr21 15626541 15626569 -29281001 + (TTTTG)n Simple_repeat Simple_repeat 4 31 0 31083 119 9 62 chr21 15626569 15629411 -29278159 + L1PA7 LINE L1 425 2727 -3427 1659 124 56 12 chr21 15629411 15629661 -29277909 + AluY SINE Alu 33 293 -18 31083 119 9 62 chr21 15629661 15632881 -29274689 + L1PA7 LINE L1 2727 6117 -37 10176 226 31 16 chr21 15632879 15635802 -29271768 + L1PA12 LINE L1 2626 5594 -1990 * 6342 180 43 7 chr21 15635810 15637010 -29270560 + L1MA3 LINE L1 12 2023 -5542 * 10539 188 22 65 chr21 15637004 15637645 -29269925 + L1MA3 LINE L1 2693 3360 -4364 4251 54 0 2 chr21 15637645 15638143 -29269427 + L1PA7 LINE L1 5651 6147 -7 10539 188 22 65 chr21 15638143 15639162 -29268408 + L1MA3 LINE L1 3360 4422 -3302 1353 180 83 55 chr21 15639162 15639451 -29268119 + AluJb SINE Alu 4 300 -12 10539 188 22 65 chr21 15639451 15639584 -29267986 + L1MA3 LINE L1 4422 4559 -3165 1581 180 32 4 chr21 15639584 15639862 -29267708 + AluJb SINE Alu 10 295 -17 10539 188 22 65 chr21 15639862 15641309 -29266261 + L1MA3 LINE L1 4559 6067 -1657 1439 198 0 34 chr21 15641309 15641572 -29265998 + AluJb SINE Alu 4 257 -55 10539 188 22 65 chr21 15641572 15641787 -29265783 + L1MA3 LINE L1 6067 6290 -1434 2084 144 3 0 chr21 15641787 15642085 -29265485 + AluSx SINE Alu 1 299 -13 10539 188 22 65 chr21 15642085 15643808 -29263762 + L1MA3 LINE L1 6290 7724 0 537 185 140 0 chr21 15643789 15643901 -29263669 + L1 LINE L1 4133 4275 -1871 * 405 0 0 0 chr21 15643901 15643946 -29263624 + (CA)n Simple_repeat Simple_repeat 2 46 0 537 185 140 0 chr21 15643946 15643990 -29263580 + L1 LINE L1 4275 4311 -1835 1948 237 26 22 chr21 15644246 15644710 -29262860 - MLT1C LTR MaLR 0 467 2 457 342 49 26 chr21 15644754 15645058 -29262512 - LTR16C LTR ERVL -10 481 171 43134 37 22 2 chr21 15645321 15651372 -29256198 + L1PA2 LINE L1 1 6172 0 1405 158 56 8 chr21 15651378 15651644 -29255926 + L1MB3 LINE L1 5889 6167 -16 269 105 23 75 chr21 15651651 15651784 -29255786 + (TA)n Simple_repeat Simple_repeat 1 126 0 43 0 0 0 chr21 15651799 15651842 -29255728 + AT_rich Low_complexity Low_complexity 1 43 0 414 283 257 0 chr21 15653043 15653230 -29254340 + Charlie8 DNA MER1_type 31 265 -2152 198 330 33 11 chr21 15653314 15653405 -29254165 - MIR SINE MIR -64 144 52 27 29 0 0 chr21 15653585 15653619 -29253951 + AT_rich Low_complexity Low_complexity 1 34 0 2368 103 0 3 chr21 15653693 15654003 -29253567 - AluSq SINE Alu -4 309 1 1722 140 30 0 chr21 15654234 15654394 -29253176 - L1MA4 LINE L1 -7 6293 6139 1900 107 7 37 chr21 15654394 15654714 -29252856 + AluSx SINE Alu 5 312 0 1722 140 30 0 chr21 15654714 15654853 -29252717 - L1MA4 LINE L1 -161 6139 5985 23 0 0 0 chr21 15655277 15655300 -29252270 + AT_rich Low_complexity Low_complexity 1 23 0 334 303 60 53 chr21 15655345 15655626 -29251944 + HAL1b LINE L1 178 460 -888 225 0 0 0 chr21 15655695 15655720 -29251850 + (TG)n Simple_repeat Simple_repeat 1 25 0 351 307 66 36 chr21 15656064 15656230 -29251340 - HAL1 LINE L1 -84 2423 2253 1129 107 0 6 chr21 15656686 15656845 -29250725 - L1PA13 LINE L1 -6 6157 6000 304 351 117 0 chr21 15656945 15657150 -29250420 - HAL1 LINE L1 -629 1878 1650 302 308 58 23 chr21 15657155 15657327 -29250243 - HAL1 LINE L1 -936 1571 1394 3256 119 22 2 chr21 15657327 15657771 -29249799 - MLT2A2 LTR ERVL 0 453 1 20397 77 5 2 chr21 15657771 15660356 -29247214 - HERVL-A2 LTR ERVL 0 5654 3063 3353 121 13 0 chr21 15660370 15660817 -29246753 - MLT2A2 LTR ERVL 0 453 1 2843 101 0 0 chr21 15661380 15661735 -29245835 + THE1A LTR MaLR 1 355 0 12486 102 2 1 chr21 15661735 15663312 -29244258 + THE1A-int LTR MaLR 1 1580 0 2628 81 60 0 chr21 15663312 15663647 -29243923 + THE1A LTR MaLR 1 355 0 658 209 57 0 chr21 15663771 15663929 -29243641 - L1MC3 LINE L1 0 7785 7619 1896 146 143 126 chr21 15663939 15664223 -29243347 - L1MC3 LINE L1 -322 7463 7098 301 265 0 0 chr21 15664223 15664291 -29243279 - MLT1F1 LTR MaLR -456 111 44 1896 146 143 126 chr21 15664291 15664486 -29243084 - L1MC3 LINE L1 -687 7098 6908 5520 167 26 14 chr21 15665695 15666334 -29241236 - L1PB4 LINE L1 -3 6153 5523 1730 171 3 17 chr21 15666334 15666627 -29240943 - AluJo SINE Alu -21 291 3 5520 167 26 14 chr21 15666627 15667843 -29239727 - L1PB4 LINE L1 -633 5523 4276 2121 243 88 17 chr21 15668077 15668654 -29238916 - MLT1E2 LTR MaLR -8 618 1 5996 144 25 13 chr21 15669819 15670331 -29237239 + L1PBa LINE L1 6 511 -6352 1733 91 56 4 chr21 15670331 15670583 -29236987 + AluY SINE Alu 36 300 -11 5996 144 25 13 chr21 15670583 15672195 -29235375 + L1PBa LINE L1 511 2359 -4504 265 231 0 0 chr21 15672195 15672247 -29235323 + LTR30 LTR ERV1 1 52 -670 1568 89 4 57 chr21 15672247 15672493 -29235077 + LTR12 LTR ERV1 53 285 -429 285 180 58 79 chr21 15672493 15672583 -29234987 + LTR30 LTR ERV1 478 642 -75 749 110 0 0 chr21 15672586 15672686 -29234884 + LTR12 LTR ERV1 615 714 0 4822 148 49 3 chr21 15672686 15674068 -29233502 + L1PBa LINE L1 2362 3803 -3059 423 119 34 0 chr21 15674068 15674127 -29233443 - AluS SINE Alu -231 81 21 292 211 35 0 chr21 15674158 15674215 -29233355 - MLT1F1 LTR MaLR -332 235 177 21 57 0 0 chr21 15674246 15674281 -29233289 + AT_rich Low_complexity Low_complexity 1 35 0 451 300 86 64 chr21 15674411 15674678 -29232892 - LTR67 LTR ERVL -256 301 29 524 312 91 22 chr21 15675782 15676058 -29231512 - ERVL LTR ERVL -931 4833 4539 1618 159 81 4 chr21 15676060 15676331 -29231239 + AluJb SINE Alu 2 293 -19 1774 213 47 63 chr21 15676338 15676366 -29231204 - MLT2B1 LTR ERVL -20 500 473 294 73 0 0 chr21 15676366 15676407 -29231163 + (TG)n Simple_repeat Simple_repeat 2 42 0 1774 213 47 63 chr21 15676407 15676886 -29230684 - MLT2B1 LTR ERVL -47 473 1 1845 213 67 77 chr21 15676931 15677589 -29229981 + MLT1E2 LTR MaLR 1 626 0 647 327 70 43 chr21 15677589 15677951 -29229619 - ERVL LTR ERVL -1278 4486 4102 2881 115 26 28 chr21 15677951 15678378 -29229192 + MSTA LTR MaLR 3 428 0 647 327 70 43 chr21 15678378 15678574 -29228996 - ERVL LTR ERVL -1662 4102 3913 2151 85 61 0 chr21 15678764 15679057 -29228513 - AluSp SINE Alu -2 311 1 464 314 59 0 chr21 15679216 15679385 -29228185 - ERVL LTR ERVL -2256 3508 3330 783 149 12 38 chr21 15679399 15679661 -29227909 + AluJ SINE Alu 1 312 0 2244 97 3 3 chr21 15679663 15679963 -29227607 + AluY SINE Alu 3 302 -9 292 277 132 57 chr21 15680113 15680272 -29227298 - ERVL LTR ERVL -2549 3105 2935 274 236 69 0 chr21 15680556 15680628 -29226942 + U6 snRNA snRNA 31 107 0 269 337 0 22 chr21 15680742 15680831 -29226739 + MIR SINE MIR 20 106 -156 1503 160 12 20 chr21 15680836 15681080 -29226490 + MLT1D LTR MaLR 1 242 -263 560 180 137 43 chr21 15681076 15681215 -29226355 + MLT1D LTR MaLR 354 505 0 * 1656 158 0 8 chr21 15681319 15681584 -29225986 + AluJo SINE Alu 22 284 -28 22 0 0 0 chr21 15681584 15681606 -29225964 + AT_rich Low_complexity Low_complexity 1 22 0 373 292 7 36 chr21 15681728 15681865 -29225705 + MIR SINE MIR 124 256 -6 2239 92 7 0 chr21 15681865 15682196 -29225374 + AluSp SINE Alu 1 333 0 34 24 0 0 chr21 15682788 15682829 -29224741 + AT_rich Low_complexity Low_complexity 1 41 0 2662 132 0 3 chr21 15683052 15683417 -29224153 - THE1B LTR MaLR 0 364 1 2070 188 28 19 chr21 15683458 15683820 -29223750 + MLT1A1 LTR MaLR 1 365 0 275 261 15 100 chr21 15683901 15683987 -29223583 + MER94 DNA DNA 11 84 -50 2259 103 0 7 chr21 15683987 15684288 -29223282 + AluY SINE Alu 1 299 -12 275 261 15 100 chr21 15684288 15684331 -29223239 + MER94 DNA DNA 84 129 -5 182 245 41 20 chr21 15684624 15684673 -29222897 - L2 LINE L2 0 3272 3223 1867 142 3 39 chr21 15684845 15685154 -29222416 + AluSp SINE Alu 1 298 -15 184 380 36 0 chr21 15685358 15685495 -29222075 - L2 LINE L2 -501 2813 2672 339 256 137 26 chr21 15685562 15685679 -29221891 - MER5B DNA MER1_type 0 178 49 219 242 0 0 chr21 15685685 15685747 -29221823 + (TATATG)n Simple_repeat Simple_repeat 6 67 0 874 219 127 0 chr21 15686614 15686819 -29220751 - MIR SINE MIR -21 241 11 2024 165 105 33 chr21 15686886 15687055 -29220515 + MSTA LTR MaLR 1 156 -272 1841 131 11 0 chr21 15687055 15687330 -29220240 + AluSx SINE Alu 16 293 -19 2024 165 105 33 chr21 15687330 15687559 -29220011 + MSTA LTR MaLR 156 428 0 252 184 0 0 chr21 15687746 15687795 -29219775 + (TA)n Simple_repeat Simple_repeat 1 49 0 229 149 0 0 chr21 15687798 15687845 -29219725 + LTR66 LTR ERVL 398 444 -166 1696 154 19 0 chr21 15687901 15688167 -29219403 - AluJo SINE Alu -41 271 1 709 237 17 35 chr21 15688352 15688525 -29219045 - MER45A DNA AcHobo -8 170 1 998 189 53 98 chr21 15688566 15688860 -29218710 + MER34C LTR ERV1 2 229 -313 1991 171 64 9 chr21 15688860 15689206 -29218364 + MLT1A1 LTR MaLR 1 365 0 998 189 53 98 chr21 15689206 15689492 -29218078 + MER34C LTR ERV1 229 526 -16 222 37 0 0 chr21 15690660 15690687 -29216883 + (GAA)n Simple_repeat Simple_repeat 2 28 0 189 244 41 114 chr21 15690743 15690866 -29216704 + MIR SINE MIR 85 198 -64 346 291 0 0 chr21 15691207 15691286 -29216284 - MER45B DNA AcHobo -923 117 39 19195 79 7 1 chr21 15691287 15693869 -29213701 + L1PA6 LINE L1 1380 3976 -2170 43580 35 22 1 chr21 15693877 15699769 -29207801 + L1PA2 LINE L1 1 6018 -137 351 0 0 0 chr21 15699772 15699811 -29207759 + (TAAA)n Simple_repeat Simple_repeat 2 40 0 11603 65 2 2 chr21 15699811 15701997 -29205573 + L1PA6 LINE L1 3965 6154 0 2175 112 0 3 chr21 15702058 15702353 -29205217 - AluSx SINE Alu -18 294 1 374 237 32 32 chr21 15702637 15702730 -29204840 - MER5A DNA MER1_type -79 110 18 3939 98 2 0 chr21 15702825 15703333 -29204237 - L1PB1 LINE L1 0 6151 5643 346 272 61 18 chr21 15703407 15703521 -29204049 + MLT1K LTR MaLR 459 577 -11 2108 253 66 9 chr21 15705456 15705641 -29201929 - MER119 DNA MER1_type -2 581 408 1755 144 17 34 chr21 15705641 15705939 -29201631 - AluJo SINE Alu -19 293 1 2108 253 66 9 chr21 15705939 15705961 -29201609 - MER119 DNA MER1_type -175 408 389 2805 221 5 19 chr21 15705961 15706536 -29201034 - MLT1F1 LTR MaLR 0 567 1 2108 253 66 9 chr21 15706536 15706873 -29200697 - MER119 DNA MER1_type -194 389 5 30 45 0 0 chr21 15707020 15707064 -29200506 + AT_rich Low_complexity Low_complexity 1 44 0 403 244 76 122 chr21 15707393 15707803 -29199767 + HAL1 LINE L1 28 418 -2089 374 308 86 40 chr21 15707891 15708089 -29199481 + HAL1 LINE L1 574 780 -1727 2578 52 7 0 chr21 15708105 15708412 -29199158 - AluY SINE Alu -2 309 1 666 208 27 123 chr21 15708463 15708723 -29198847 - L1MC4 LINE L1 -2 8040 7806 368 315 70 51 chr21 15708725 15708890 -29198680 - L1MC4 LINE L1 -313 7729 7554 2188 99 0 7 chr21 15708890 15709183 -29198387 + AluSc SINE Alu 1 291 -18 368 315 70 51 chr21 15709183 15709331 -29198239 - L1MC4 LINE L1 -488 7554 7410 * 646 249 88 80 chr21 15709330 15709346 -29198224 + HAL1 LINE L1 2015 2029 -478 405 0 0 0 chr21 15709346 15709391 -29198179 + (CA)n Simple_repeat Simple_repeat 2 46 0 646 249 88 80 chr21 15709391 15709464 -29198106 + HAL1 LINE L1 2029 2100 -407 2467 253 6 12 chr21 15709464 15709981 -29197589 - LTR40a LTR ERVL -4 515 2 646 249 88 80 chr21 15709981 15710379 -29197191 + HAL1 LINE L1 2100 2507 0 861 163 8 0 chr21 15710386 15710515 -29197055 + FLAM_A SINE Alu 1 130 -3 1935 159 0 13 chr21 15710520 15710654 -29196916 + AluJo SINE Alu 3 137 -175 2111 107 3 58 chr21 15710654 15710982 -29196588 + AluSx SINE Alu 1 310 -2 1935 159 0 13 chr21 15710982 15711161 -29196409 + AluJo SINE Alu 137 312 0 309 308 161 41 chr21 15711811 15712074 -29195496 - L1ME4a LINE L1 -84 6037 5710 2121 110 23 19 chr21 15712074 15712384 -29195186 - AluSx SINE Alu -1 311 1 309 308 161 41 chr21 15712384 15712510 -29195060 - L1ME4a LINE L1 -411 5710 5601 277 136 0 23 chr21 15713315 15713391 -29194179 - AluSx SINE Alu 0 316 242 1218 130 0 11 chr21 15713391 15713568 -29194002 - AluSx SINE Alu -137 175 1 1906 143 21 7 chr21 15713594 15713881 -29193689 + AluSx SINE Alu 14 304 -8 311 230 204 21 chr21 15713951 15714142 -29193428 + HAL1 LINE L1 829 1054 -1453 1862 276 71 58 chr21 15714301 15715387 -29192183 + HAL1 LINE L1 1271 2373 -134 772 226 0 8 chr21 15715387 15715520 -29192050 + FLAM_A SINE Alu 1 132 -1 1862 276 71 58 chr21 15715520 15715579 -29191991 + HAL1 LINE L1 2373 2430 -77 744 173 24 4 chr21 15715579 15715828 -29191742 + GA-rich Low_complexity Low_complexity 1 254 0 342 267 138 9 chr21 15715833 15715949 -29191621 + HAL1 LINE L1 2377 2507 0 215 200 0 0 chr21 15715970 15716005 -29191565 + polypurine Low_complexity Low_complexity 3 37 0 535 154 26 0 chr21 15716822 15716900 -29190670 - AluJo SINE Alu -14 298 219 * 850 188 7 0 chr21 15716896 15717034 -29190536 - AluJo SINE Alu -172 140 2 2114 116 28 0 chr21 15717041 15717325 -29190245 - AluSx SINE Alu -20 292 1 252 295 71 89 chr21 15717483 15717595 -29189975 + MIR SINE MIR 35 144 -64 1644 133 38 44 chr21 15717609 15718045 -29189525 + AluSq SINE Alu 1 434 0 185 272 110 37 chr21 15718624 15718760 -29188810 - MIR3 SINE MIR -5 203 58 2181 128 0 3 chr21 15719054 15719351 -29188219 + AluSx SINE Alu 1 296 -16 224 291 179 28 chr21 15720142 15720321 -29187249 + MIR SINE MIR 45 250 -12 378 250 176 34 chr21 15720355 15720531 -29187039 + MIR SINE MIR 53 253 -9 323 316 74 62 chr21 15721499 15721838 -29185732 - LTR16C LTR ERVL -31 460 118 391 257 64 50 chr21 15721969 15722109 -29185461 + MER21A LTR ERV1 415 556 -375 1406 174 23 72 chr21 15722114 15722256 -29185314 + AluJo SINE Alu 1 122 -190 2339 81 3 0 chr21 15722256 15722551 -29185019 + AluSp SINE Alu 2 297 -16 1406 174 23 72 chr21 15722551 15722712 -29184858 + AluJo SINE Alu 122 289 -23 23 78 0 0 chr21 15722957 15723008 -29184562 + AT_rich Low_complexity Low_complexity 1 51 0 1031 252 123 39 chr21 15723826 15723926 -29183644 - MLT1H LTR MaLR 0 549 459 183 80 0 0 chr21 15723926 15723951 -29183619 + (GGCTG)n Simple_repeat Simple_repeat 4 28 0 1031 252 123 39 chr21 15723951 15724225 -29183345 - MLT1H LTR MaLR -90 459 132 2181 132 54 17 chr21 15724225 15724574 -29182996 - THE1B LTR MaLR -2 362 1 1031 252 123 39 chr21 15724574 15724630 -29182940 - MLT1H LTR MaLR -417 132 82 2310 139 39 28 chr21 15724725 15725085 -29182485 + THE1B LTR MaLR 1 364 0 2296 98 10 0 chr21 15725129 15725435 -29182135 + AluSp SINE Alu 1 309 -4 302 273 36 9 chr21 15725766 15725876 -29181694 - MIR SINE MIR -26 236 124 1378 241 76 18 chr21 15725998 15726446 -29181124 + L1ME3A LINE L1 5474 5947 -223 482 270 22 38 chr21 15726550 15726735 -29180835 + L1ME3A LINE L1 5988 6169 -1 1577 286 36 5 chr21 15726848 15727296 -29180274 - LTR16B LTR ERVL 0 464 3 2694 114 5 8 chr21 15727596 15727972 -29179598 - THE1C LTR MaLR 0 375 1 1810 131 30 49 chr21 15728137 15728503 -29179067 + Charlie3 DNA MER1_type 1 2702 -8 1896 158 20 0 chr21 15729061 15729365 -29178205 - AluSx SINE Alu -2 310 1 257 337 84 20 chr21 15730487 15730689 -29176881 - L2 LINE L2 -1764 1550 1336 2207 122 0 19 chr21 15730753 15731072 -29176498 + AluSq SINE Alu 1 313 0 421 277 43 14 chr21 15731996 15732137 -29175433 - MLT1L LTR MaLR -293 322 178 202 368 123 5 chr21 15732872 15733092 -29174478 + L2 LINE L2 2854 3099 -173 2306 95 3 0 chr21 15733481 15733776 -29173794 + AluSx SINE Alu 1 296 -16 292 286 0 16 chr21 15734548 15734611 -29172959 + L2 LINE L2 3206 3267 -5 277 231 269 8 chr21 15734615 15734749 -29172821 - MIR SINE MIR -47 215 47 1937 137 3 47 chr21 15735005 15735327 -29172243 - AluJb SINE Alu -4 308 1 1059 107 7 7 chr21 15735486 15735636 -29171934 + AluSq/x SINE Alu 1 150 -162 2423 86 3 0 chr21 15736112 15736415 -29171155 - AluSg SINE Alu -6 304 1 518 265 130 88 chr21 15737921 15738306 -29169264 - LTR67 LTR ERVL -52 505 105 1944 202 39 106 chr21 15738545 15738641 -29168929 + MER119 DNA MER1_type 3 104 -479 2115 127 3 13 chr21 15738641 15738956 -29168614 + AluSx SINE Alu 1 312 0 1944 202 39 106 chr21 15738956 15739482 -29168088 + MER119 DNA MER1_type 104 583 0 21 0 0 0 chr21 15739613 15739634 -29167936 + AT_rich Low_complexity Low_complexity 1 21 0 1900 117 95 0 chr21 15739812 15740085 -29167485 + AluSx SINE Alu 1 299 -13 1902 175 3 0 chr21 15740463 15740772 -29166798 - AluJb SINE Alu -2 310 1 1097 233 67 74 chr21 15740889 15741253 -29166317 + MLT1E LTR MaLR 193 555 -38 2066 107 0 75 chr21 15741253 15741571 -29165999 - AluSx SINE Alu -16 296 3 1097 233 67 74 chr21 15741571 15741610 -29165960 + MLT1E LTR MaLR 555 593 0 1188 218 66 51 chr21 15741610 15742019 -29165551 + L1MC4 LINE L1 7617 8031 -11 2646 128 0 31 chr21 15742796 15743210 -29164360 + MSTA LTR MaLR 1 401 -27 2285 104 3 0 chr21 15743221 15743530 -29164040 - AluSx SINE Alu -2 310 1 193 306 28 0 chr21 15743570 15743642 -29163928 + L2 LINE L2 2573 2646 -668 659 146 0 0 chr21 15744182 15744271 -29163299 - AluJ/FLAM SINE Alu -223 89 1 1571 236 136 40 chr21 15744306 15744462 -29163108 - L1MC4 LINE L1 0 8042 7902 2057 127 0 7 chr21 15744462 15744779 -29162791 + AluSx SINE Alu 1 315 0 1571 236 136 40 chr21 15744779 15745241 -29162329 - L1MC4 LINE L1 -140 7902 7364 926 207 246 18 chr21 15745293 15745421 -29162149 + L1MD3 LINE L1 5698 5796 -2199 2011 119 3 20 chr21 15745421 15745715 -29161855 + AluSx SINE Alu 1 289 -23 926 207 246 18 chr21 15745715 15745924 -29161646 + L1MD3 LINE L1 5796 6112 -1883 236 160 0 40 chr21 15745925 15745975 -29161595 + Alu SINE Alu 122 169 -134 1776 153 19 32 chr21 15746037 15746095 -29161475 - AluSx SINE Alu -2 310 253 207 88 0 0 chr21 15746095 15746129 -29161441 + (GAGTG)n Simple_repeat Simple_repeat 3 36 0 1776 153 19 32 chr21 15746129 15746384 -29161186 - AluSx SINE Alu -59 253 1 1720 182 23 10 chr21 15746411 15746470 -29161100 - AluJb SINE Alu 0 312 255 270 106 0 0 chr21 15746470 15746517 -29161053 + (GAGTG)n Simple_repeat Simple_repeat 1 47 0 1720 182 23 10 chr21 15746517 15746765 -29160805 - AluJb SINE Alu -57 255 1 24 0 0 0 chr21 15746781 15746805 -29160765 + AT_rich Low_complexity Low_complexity 1 24 0 24 32 0 0 chr21 15747332 15747363 -29160207 + AT_rich Low_complexity Low_complexity 1 31 0 2147 83 7 20 chr21 15747363 15747664 -29159906 + AluSc SINE Alu 1 297 -12 193 333 59 0 chr21 15747827 15747929 -29159641 - MIR SINE MIR -6 256 149 655 276 76 70 chr21 15748113 15748457 -29159113 + LTR16C LTR ERVL 146 491 0 2249 85 3 0 chr21 15748504 15748806 -29158764 + AluSq SINE Alu 1 303 0 769 274 73 29 chr21 15748811 15749085 -29158485 + MLT1J LTR MaLR 53 338 -173 1309 94 6 6 chr21 15749158 15749338 -29158232 - AluSg/x SINE Alu -3 309 130 560 152 43 0 chr21 15749393 15749485 -29158085 + U6 snRNA snRNA 12 107 0 1749 99 8 4 chr21 15749485 15749737 -29157833 + L1MA2 LINE L1 6048 6300 -4 183 303 20 61 chr21 15749775 15749874 -29157696 - MIR SINE MIR -150 112 18 698 189 15 15 chr21 15750042 15750241 -29157329 + FLAM_C SINE Alu 1 199 0 408 91 0 15 chr21 15750175 15750417 -29157153 + (GAAA)n Simple_repeat Simple_repeat 3 243 0 912 161 7 0 chr21 15750418 15750561 -29157009 + FRAM SINE Alu 1 140 -36 459 92 0 0 chr21 15750568 15750633 -29156937 + (GGAA)n Simple_repeat Simple_repeat 2 66 0 1991 117 38 127 chr21 15750740 15751117 -29156453 + MLT1B LTR MaLR 1 337 -53 2367 68 14 3 chr21 15751117 15751411 -29156159 + AluSp SINE Alu 2 298 -15 1991 117 38 127 chr21 15751411 15751459 -29156111 + MLT1B LTR MaLR 337 388 -2 23 0 0 0 chr21 15752380 15752403 -29155167 + AT_rich Low_complexity Low_complexity 1 23 0 2480 67 0 10 chr21 15752461 15752775 -29154795 + AluY SINE Alu 1 311 0 2331 102 0 7 chr21 15752808 15753113 -29154457 - AluSq SINE Alu -10 303 1 1389 179 145 36 chr21 15753455 15753902 -29153668 + LTR54B LTR ERV1 2 497 -1 462 219 0 0 chr21 15754015 15754120 -29153450 + GA-rich Low_complexity Low_complexity 1 105 0 2033 122 0 0 chr21 15755207 15755494 -29152076 + AluSq SINE Alu 1 287 -26 558 226 157 5 chr21 15756238 15756442 -29151128 + MER112 DNA MER1_type 19 253 -7 892 126 7 44 chr21 15757056 15757191 -29150379 + FLAM_C SINE Alu 1 130 -3 1141 199 6 65 chr21 15757883 15757904 -29149666 - MER33 DNA MER1_type -2269 316 295 2258 108 0 3 chr21 15757904 15758200 -29149370 + AluSx SINE Alu 1 295 -17 1141 199 6 65 chr21 15758200 15758514 -29149056 - MER33 DNA MER1_type -2290 295 1 361 259 42 93 chr21 15758828 15759021 -29148549 - MIR SINE MIR -49 213 31 1982 216 157 7 chr21 15760798 15761358 -29146212 - LTR48B LTR ERV1 0 644 1 447 19 0 0 chr21 15761804 15761856 -29145714 + (TG)n Simple_repeat Simple_repeat 1 52 0 1761 159 0 61 chr21 15761884 15762119 -29145451 - AluJo SINE Alu -1 311 100 2360 77 3 10 chr21 15762119 15762418 -29145152 - AluSg1 SINE Alu -12 297 1 667 122 0 0 chr21 15762419 15762509 -29145061 - AluJ/FLAM SINE Alu -218 94 5 972 148 94 20 chr21 15762535 15762738 -29144832 - L1PA16 LINE L1 -2 6164 5947 2553 44 0 0 chr21 15763029 15763323 -29144247 + AluY SINE Alu 1 294 -17 389 282 50 82 chr21 15763459 15763719 -29143851 - L1ME4a LINE L1 -43 6078 5833 1875 142 7 3 chr21 15763719 15764027 -29143543 - AluJb SINE Alu 0 310 2 389 282 50 82 chr21 15764027 15764166 -29143404 - L1ME4a LINE L1 -288 5833 5691 2087 140 3 0 chr21 15764168 15764468 -29143102 + AluSx SINE Alu 1 301 -11 257 194 0 28 chr21 15765054 15765126 -29142444 + T-rich Low_complexity Low_complexity 3 72 0 716 236 0 0 chr21 15765129 15765252 -29142318 - FLAM_A SINE Alu -10 123 1 2368 80 3 16 chr21 15765980 15766292 -29141278 - AluY SINE Alu -2 309 2 822 142 55 8 chr21 15766326 15766453 -29141117 + FLAM_C SINE Alu 1 133 0 30 27 0 0 chr21 15766453 15766490 -29141080 + AT_rich Low_complexity Low_complexity 1 37 0 3026 158 34 14 chr21 15767317 15767818 -29139752 - MER41E LTR ERV1 -1 511 1 2046 106 26 29 chr21 15768413 15768724 -29138846 + AluSx SINE Alu 1 310 -2 832 146 0 8 chr21 15768736 15768859 -29138711 + FLAM_C SINE Alu 3 124 -19 264 185 0 0 chr21 15769027 15769081 -29138489 + (TG)n Simple_repeat Simple_repeat 1 54 0 795 161 0 0 chr21 15769081 15769199 -29138371 - FLAM_C SINE Alu -23 120 3 277 218 0 18 chr21 15769204 15769259 -29138311 + MER5B DNA MER1_type 120 173 -5 372 189 91 0 chr21 15770074 15770155 -29137415 + FLAM SINE Alu 52 110 -23 2169 119 0 0 chr21 15770160 15770453 -29137117 - AluSx SINE Alu -16 296 4 207 0 0 0 chr21 15770482 15770505 -29137065 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 247 245 19 0 chr21 15770517 15770570 -29137000 + U7 snRNA snRNA 9 62 -1 256 170 64 0 chr21 15770852 15770899 -29136671 - AluJo SINE Alu -168 134 85 342 0 0 0 chr21 15771360 15771398 -29136172 + (T)n Simple_repeat Simple_repeat 1 38 0 2690 42 0 0 chr21 15771566 15771872 -29135698 + AluY SINE Alu 1 306 -5 493 172 0 11 chr21 15772510 15772597 -29134973 - AluSp/q SINE Alu -13 300 215 607 40 0 0 chr21 15772623 15772697 -29134873 - tRNA-Gly-GGC tRNA tRNA 0 74 1 1786 136 0 42 chr21 15772811 15773121 -29134449 + AluJo SINE Alu 1 297 -15 27 49 0 0 chr21 15773263 15773304 -29134266 + AT_rich Low_complexity Low_complexity 1 41 0 335 353 77 24 chr21 15773537 15773744 -29133826 + L3 LINE CR1 1060 1277 -300 1480 113 0 0 chr21 15773775 15773978 -29133592 + AluSg/x SINE Alu 104 306 -4 2482 57 3 3 chr21 15774071 15774370 -29133200 + AluSp SINE Alu 1 299 -14 222 253 84 24 chr21 15774509 15774592 -29132978 - L2 LINE L2 -427 2887 2800 38 51 0 0 chr21 15774676 15774735 -29132835 + AT_rich Low_complexity Low_complexity 1 59 0 2066 91 32 7 chr21 15774800 15775085 -29132485 - AluSq SINE Alu -19 294 3 2007 102 92 0 chr21 15775085 15775369 -29132201 - AluSx SINE Alu -2 310 1 403 237 0 10 chr21 15775383 15775480 -29132090 + MIR SINE MIR 100 195 -67 343 176 176 69 chr21 15775485 15775517 -29132053 + L2 LINE L2 3201 3228 -85 887 176 136 40 chr21 15775517 15775716 -29131854 - MER20 DNA MER1_type -1 218 1 343 176 176 69 chr21 15775716 15775785 -29131785 + L2 LINE L2 3228 3313 0 295 283 28 28 chr21 15775981 15776087 -29131483 - L1P4 LINE L1 -362 5799 5694 1451 175 14 35 chr21 15776162 15776447 -29131123 - MLT2D LTR ERVL 0 414 136 1938 149 0 3 chr21 15776447 15776736 -29130834 + AluJb SINE Alu 1 288 -24 1027 139 6 30 chr21 15776759 15776925 -29130645 + AluSg/x SINE Alu 120 281 -29 1648 139 85 36 chr21 15776948 15777279 -29130291 - THE1C LTR MaLR -28 347 1 598 230 7 15 chr21 15777306 15777441 -29130129 - MLT2D LTR ERVL -270 144 11 1937 157 3 3 chr21 15777441 15777740 -29129830 + AluJb SINE Alu 1 299 -13 1239 174 126 33 chr21 15779502 15779772 -29127798 + AluJo SINE Alu 6 300 -12 2011 117 11 11 chr21 15779981 15780309 -29127261 - AluSx SINE Alu 0 328 1 2503 73 0 0 chr21 15780687 15780989 -29126581 + AluY SINE Alu 1 302 -9 2414 96 0 3 chr21 15782031 15782344 -29125226 - AluSx SINE Alu 0 312 1 32 43 0 0 chr21 15782372 15782418 -29125152 + AT_rich Low_complexity Low_complexity 1 46 0 187 281 37 37 chr21 15782547 15782629 -29124941 - L2 LINE L2 -314 2999 2918 2322 84 3 19 chr21 15782834 15783143 -29124427 + AluSg SINE Alu 1 304 -6 2167 123 3 0 chr21 15783185 15783487 -29124083 + AluSc SINE Alu 1 303 -6 195 42 0 0 chr21 15783536 15783560 -29124010 + (TTTA)n Simple_repeat Simple_repeat 2 25 0 2228 114 3 0 chr21 15783562 15783859 -29123711 - AluSx SINE Alu -14 298 1 237 182 0 0 chr21 15784053 15784097 -29123473 - L1MC4 LINE L1 -1338 6704 6661 1249 193 3 78 chr21 15784115 15784437 -29123133 - AluJo SINE Alu -9 303 6 2240 89 0 7 chr21 15784597 15784916 -29122654 - AluSg SINE Alu 0 319 3 627 212 79 18 chr21 15784917 15785082 -29122488 + MER5B DNA MER1_type 4 178 0 28 48 0 0 chr21 15785128 15785170 -29122400 + AT_rich Low_complexity Low_complexity 1 42 0 287 232 0 0 chr21 15785922 15785978 -29121592 - MIR3 SINE MIR -21 187 132 1334 152 134 32 chr21 15786198 15786362 -29121208 - AluJo SINE Alu 0 312 166 2007 155 0 0 chr21 15786362 15786665 -29120905 - AluJb SINE Alu -9 303 1 1334 152 134 32 chr21 15786665 15786783 -29120787 - AluJo SINE Alu -146 166 1 2428 43 17 0 chr21 15787039 15787338 -29120232 - AluY SINE Alu -2 309 6 1083 124 47 42 chr21 15787383 15787576 -29119994 + L1MB3 LINE L1 5975 6168 -15 225 0 0 0 chr21 15787576 15787601 -29119969 + (TG)n Simple_repeat Simple_repeat 2 26 0 1053 187 5 48 chr21 15787601 15787810 -29119760 - AluJo SINE Alu -21 291 92 2111 144 0 3 chr21 15787892 15788205 -29119365 - AluJo SINE Alu 0 312 1 2143 107 19 7 chr21 15788244 15788553 -29119017 - AluSp SINE Alu 0 313 1 2212 105 7 0 chr21 15788580 15788875 -29118695 + AluSx SINE Alu 1 297 -15 2145 102 0 11 chr21 15789122 15789436 -29118134 - AluSx SINE Alu 0 311 1 215 285 122 24 chr21 15789547 15789670 -29117900 - MIR SINE MIR -115 147 13 421 271 130 26 chr21 15790662 15790854 -29116716 + MIR SINE MIR 27 238 -24 2452 76 0 0 chr21 15791045 15791349 -29116221 + AluSg SINE Alu 1 304 -6 2571 165 24 7 chr21 15791617 15792036 -29115534 + MSTB LTR MaLR 1 426 0 226 284 74 0 chr21 15792270 15792365 -29115205 + L1MC/D LINE L1 5811 5912 -1896 533 240 139 51 chr21 15793138 15793503 -29114067 + HAL1b LINE L1 66 472 -876 2063 223 53 68 chr21 15793503 15793668 -29113902 + MLT1F LTR MaLR 3 169 -373 2188 84 27 10 chr21 15793668 15793965 -29113605 + AluSp SINE Alu 1 302 -11 2063 223 53 68 chr21 15793965 15794347 -29113223 + MLT1F LTR MaLR 169 542 0 533 240 139 51 chr21 15794347 15794390 -29113180 + HAL1b LINE L1 472 510 -838 239 214 0 0 chr21 15794398 15794440 -29113130 + HAL1b LINE L1 490 531 -817 2170 109 0 3 chr21 15794479 15794791 -29112779 + AluSq SINE Alu 2 312 0 796 250 17 6 chr21 15794814 15794990 -29112580 + AluJb SINE Alu 126 303 -9 597 245 65 82 chr21 15794991 15795407 -29112163 + HAL1b LINE L1 611 1019 -329 2501 63 0 0 chr21 15795418 15795717 -29111853 - AluY SINE Alu -12 299 1 2328 103 3 0 chr21 15795799 15796111 -29111459 - AluSp SINE Alu 0 313 1 1939 153 0 0 chr21 15796180 15796508 -29111062 - AluJo SINE Alu 0 330 3 504 297 57 19 chr21 15796512 15796721 -29110849 - L1ME LINE L1 -308 5813 5597 618 245 97 10 chr21 15796756 15796952 -29110618 - MIR SINE MIR -4 258 46 436 290 110 0 chr21 15796996 15797141 -29110429 + MIR SINE MIR 37 197 -65 2390 86 3 0 chr21 15797141 15797444 -29110126 + AluSg SINE Alu 2 305 -5 246 237 36 43 chr21 15798022 15798161 -29109409 - Zaphod DNA AcHobo -297 3734 3597 244 39 0 98 chr21 15798169 15798188 -29109382 - Zaphod DNA AcHobo -3050 981 962 800 164 0 8 chr21 15798188 15798339 -29109231 + FLAM_C SINE Alu 1 133 0 244 39 0 98 chr21 15798339 15798370 -29109200 - Zaphod DNA AcHobo -3069 962 936 2138 214 134 54 chr21 15798379 15798536 -29109034 - Zaphod DNA AcHobo -3071 960 817 2282 80 3 3 chr21 15798536 15798847 -29108723 - AluSp SINE Alu 0 311 1 2138 214 134 54 chr21 15798847 15799466 -29108104 - Zaphod DNA AcHobo -3214 817 101 2189 130 3 0 chr21 15799466 15799773 -29107797 - AluSx SINE Alu -4 308 1 2138 214 134 54 chr21 15799773 15799875 -29107695 - Zaphod DNA AcHobo -3930 101 9 2184 95 0 3 chr21 15800110 15800444 -29107126 + AluSg SINE Alu 1 333 0 1942 155 0 0 chr21 15801148 15801538 -29106032 - AluSx SINE Alu 0 390 1 1394 149 73 45 chr21 15801690 15801978 -29105592 + AluJo SINE Alu 17 312 0 237 33 0 0 chr21 15801978 15802008 -29105562 + (TA)n Simple_repeat Simple_repeat 2 31 0 24 0 0 0 chr21 15802060 15802084 -29105486 + AT_rich Low_complexity Low_complexity 1 24 0 529 281 90 4 chr21 15802097 15802364 -29105206 - L1ME4a LINE L1 -2 6119 5830 2427 83 7 0 chr21 15802373 15802675 -29104895 - AluSp SINE Alu -8 305 2 972 217 6 0 chr21 15802681 15802847 -29104723 - FAM SINE Alu -8 167 1 2424 62 0 0 chr21 15802856 15803188 -29104382 - AluY SINE Alu 0 311 1 2599 55 0 3 chr21 15803641 15803953 -29103617 - AluY SINE Alu 0 311 1 1486 108 0 19 chr21 15803999 15804211 -29103359 - AluSx SINE Alu -2 310 103 2138 106 27 0 chr21 15804211 15804504 -29103066 + AluSq SINE Alu 1 301 -12 2128 101 7 19 chr21 15804506 15804813 -29102757 + AluSx SINE Alu 1 303 -9 883 95 0 0 chr21 15804813 15804929 -29102641 - AluSx SINE Alu -197 116 1 316 255 74 34 chr21 15805003 15805152 -29102418 - L1M4 LINE L1 -893 5253 5099 339 229 72 0 chr21 15805152 15805235 -29102335 + L1ME3A LINE L1 6071 6159 -11 378 0 0 0 chr21 15805270 15805312 -29102258 + (TG)n Simple_repeat Simple_repeat 2 43 0 359 273 33 33 chr21 15805316 15805437 -29102133 - Zaphod DNA AcHobo -3652 379 259 186 43 0 0 chr21 15805459 15805482 -29102088 + (CA)n Simple_repeat Simple_repeat 2 24 0 32 26 0 0 chr21 15806887 15806926 -29100644 + AT_rich Low_complexity Low_complexity 1 39 0 371 263 97 0 chr21 15807546 15807659 -29099911 + MLT1K LTR MaLR 353 476 -112 408 227 67 25 chr21 15807659 15807778 -29099792 + MER96B DNA MER1_type? 1 124 -293 212 57 0 29 chr21 15807911 15807946 -29099624 + (TTTA)n Simple_repeat Simple_repeat 2 35 0 2013 112 3 18 chr21 15807948 15808233 -29099337 - AluSx SINE Alu -31 281 1 4108 77 28 9 chr21 15808258 15808792 -29098778 - L1PA10 LINE L1 -9 6159 5616 2114 121 3 3 chr21 15808797 15809095 -29098475 - AluSg SINE Alu -12 298 1 233 273 0 91 chr21 15809188 15809276 -29098294 + MLT1K LTR MaLR 500 579 -9 223 250 138 0 chr21 15809297 15809377 -29098193 + MIR SINE MIR 171 261 -1 938 257 32 8 chr21 15809624 15809877 -29097693 + LTR16B LTR ERVL 204 462 -2 206 31 0 31 chr21 15810175 15810207 -29097363 + (TTTTG)n Simple_repeat Simple_repeat 2 32 0 860 144 0 27 chr21 15811057 15811203 -29096367 - FLAM_C SINE Alu -1 142 1 2600 154 31 19 chr21 15811626 15812047 -29095523 - MSTB LTR MaLR 0 426 1 1831 177 0 0 chr21 15812181 15812475 -29095095 + AluJb SINE Alu 1 294 -18 1157 292 90 18 chr21 15812629 15813074 -29094496 + LTR16C LTR ERVL 1 477 -14 1314 112 52 4 chr21 15814446 15814679 -29092891 - L1MA4 LINE L1 -14 6286 6043 6821 23 0 0 chr21 15815534 15816308 -29091262 - L1PA3 LINE L1 0 6155 5382 291 402 117 0 chr21 15816582 15816975 -29090595 + L2 LINE L2 2301 2739 -575 2137 105 42 0 chr21 15817599 15817885 -29089685 + AluSg SINE Alu 3 300 -10 634 192 0 25 chr21 15817892 15818012 -29089558 + FLAM_C SINE Alu 1 117 -16 392 258 40 71 chr21 15818061 15818259 -29089311 - L2 LINE L2 0 3313 3122 24 0 0 0 chr21 15818292 15818316 -29089254 + AT_rich Low_complexity Low_complexity 1 24 0 243 307 79 0 chr21 15818740 15818854 -29088716 - L2 LINE L2 -217 3055 2933 2409 93 3 0 chr21 15819927 15820229 -29087341 - AluSx SINE Alu -7 305 3 671 198 181 6 chr21 15820320 15820502 -29087068 - ORSL DNA AcHobo -61 214 1 2020 111 14 4 chr21 15820663 15820967 -29086603 + AluSq SINE Alu 1 307 0 1851 107 114 0 chr21 15821102 15821364 -29086206 + AluSx SINE Alu 1 292 -20 740 97 18 0 chr21 15821365 15821479 -29086091 + LTR9B LTR ERV1 445 560 -84 992 266 56 73 chr21 15821487 15821660 -29085910 + L1MEd LINE L1 466 640 -5479 2223 97 7 0 chr21 15821660 15821960 -29085610 + AluSq SINE Alu 1 302 -11 992 266 56 73 chr21 15821960 15822095 -29085475 + L1MEd LINE L1 640 776 -5343 670 174 0 90 chr21 15822095 15822171 -29085399 + FLAM_A SINE Alu 1 82 -220 2052 136 7 0 chr21 15822171 15822458 -29085112 - AluSp SINE Alu -24 289 1 670 174 0 90 chr21 15822458 15822512 -29085058 + FLAM_A SINE Alu 82 120 -182 198 0 0 0 chr21 15822512 15822534 -29085036 + (TTAA)n Simple_repeat Simple_repeat 3 24 0 670 174 0 90 chr21 15822534 15822546 -29085024 + FLAM_A SINE Alu 120 131 -171 2256 128 0 3 chr21 15822548 15822861 -29084709 + AluSx SINE Alu 1 312 0 992 266 56 73 chr21 15822861 15823301 -29084269 + L1MEd LINE L1 777 1205 -4914 2174 118 10 0 chr21 15823366 15823662 -29083908 + AluSq SINE Alu 1 299 -14 4866 117 34 14 chr21 15823829 15824150 -29083420 + MER4E LTR ERV1 1 314 -465 2153 93 3 26 chr21 15824150 15824463 -29083107 + AluSc SINE Alu 1 306 -3 2335 63 0 0 chr21 15824463 15824748 -29082822 - AluSx SINE Alu -27 285 1 4866 117 34 14 chr21 15824748 15825188 -29082382 + MER4E LTR ERV1 313 778 -1 972 229 95 53 chr21 15825389 15825747 -29081823 + HAL1 LINE L1 1 373 -2134 2222 97 3 3 chr21 15825750 15826039 -29081531 + AluSc SINE Alu 1 289 -20 2317 85 24 0 chr21 15826150 15826445 -29081125 - AluSp SINE Alu -10 303 2 2126 104 20 3 chr21 15826532 15826829 -29080741 + AluSx SINE Alu 1 302 -10 2098 104 7 0 chr21 15827517 15827797 -29079773 + AluSx SINE Alu 1 282 -30 285 92 15 31 chr21 15828124 15828189 -29079381 + (TCC)n Simple_repeat Simple_repeat 3 66 0 218 189 0 19 chr21 15828247 15828300 -29079270 + CT-rich Low_complexity Low_complexity 3 54 0 1008 108 12 30 chr21 15828429 15828596 -29078974 - AluJo SINE Alu -117 195 32 1641 65 0 0 chr21 15828596 15828795 -29078775 + AluSg/x SINE Alu 74 272 -40 277 264 8 139 chr21 15829111 15829172 -29078398 + MER5B DNA MER1_type 65 132 -46 216 86 0 0 chr21 15829172 15829207 -29078363 + (TAGA)n Simple_repeat Simple_repeat 4 38 0 2517 41 3 3 chr21 15829209 15829504 -29078066 - AluY SINE Alu -16 295 1 277 264 8 139 chr21 15829504 15829568 -29078002 + MER5B DNA MER1_type 133 176 -2 342 264 23 0 chr21 15829818 15829905 -29077665 - MIR SINE MIR -28 234 146 261 88 0 0 chr21 15830167 15830201 -29077369 - FLAM_A SINE Alu -77 55 22 2134 98 35 0 chr21 15832475 15832760 -29074810 - AluSp SINE Alu -17 296 2 1391 170 33 65 chr21 15832993 15833299 -29074271 + AluJb SINE Alu 1 296 -16 2370 60 20 3 chr21 15833367 15833666 -29073904 + AluY SINE Alu 1 304 -7 223 135 0 39 chr21 15833863 15833915 -29073655 + (TAG)n Simple_repeat Simple_repeat 1 50 0 471 272 19 25 chr21 15833926 15834088 -29073482 - MIR SINE MIR -18 244 84 223 216 0 20 chr21 15834324 15834375 -29073195 + MER5A DNA MER1_type 14 63 -126 1306 140 159 15 chr21 15834524 15834795 -29072775 + L1MA8 LINE L1 5982 6291 0 21 36 0 0 chr21 15836235 15836263 -29071307 + AT_rich Low_complexity Low_complexity 1 28 0 183 333 49 29 chr21 15837054 15837156 -29070414 + L2 LINE L2 3209 3312 -1 1665 92 0 0 chr21 15837598 15837804 -29069766 + AluSg/x SINE Alu 85 290 -22 267 103 0 0 chr21 15837814 15837853 -29069717 + (CA)n Simple_repeat Simple_repeat 2 40 0 184 295 21 74 chr21 15837863 15837958 -29069612 + L2 LINE L2 2236 2325 -989 201 258 48 0 chr21 15838232 15838294 -29069276 - MER5A DNA MER1_type -92 97 33 264 326 133 23 chr21 15838655 15839045 -29068525 - L2 LINE L2 -862 2452 2020 2247 99 0 0 chr21 15839156 15839460 -29068110 - AluSx SINE Alu 0 304 1 447 180 57 41 chr21 15839844 15839966 -29067604 - FLAM_A SINE Alu -1 141 18 2416 90 3 0 chr21 15839975 15840285 -29067285 - AluSp SINE Alu -2 311 1 195 289 157 12 chr21 15841030 15841113 -29066457 + L2 LINE L2 3176 3270 -43 44 20 0 0 chr21 15841496 15841547 -29066023 + AT_rich Low_complexity Low_complexity 1 51 0 2202 118 10 0 chr21 15841688 15841866 -29065704 - AluSx SINE Alu -4 308 124 330 26 0 0 chr21 15841866 15841905 -29065665 + (TG)n Simple_repeat Simple_repeat 2 40 0 2202 118 10 0 chr21 15841905 15842031 -29065539 - AluSx SINE Alu -188 124 1 2311 96 0 46 chr21 15842116 15842440 -29065130 + AluSx SINE Alu 1 309 -3 1842 125 26 72 chr21 15842450 15842754 -29064816 + AluJo SINE Alu 1 290 -22 1118 177 138 0 chr21 15843705 15843988 -29063582 - MER33 DNA MER1_type 0 324 3 22 0 0 0 chr21 15844318 15844340 -29063230 + AT_rich Low_complexity Low_complexity 1 22 0 189 0 0 0 chr21 15844669 15844690 -29062880 + (TTTTTG)n Simple_repeat Simple_repeat 3 23 0 652 125 48 0 chr21 15844981 15845085 -29062485 - HY1 scRNA scRNA -3 109 1 384 65 0 48 chr21 15845622 15845706 -29061864 - Alu SINE Alu 0 302 244 2372 97 0 3 chr21 15845899 15846210 -29061360 - AluY SINE Alu 0 311 2 2349 69 7 7 chr21 15846255 15846545 -29061025 - AluSp SINE Alu -23 290 1 2379 82 20 0 chr21 15846864 15847168 -29060402 - AluSg SINE Alu 0 310 1 2088 141 0 0 chr21 15847168 15847458 -29060112 - AluSx SINE Alu -21 291 1 1422 243 83 69 chr21 15847638 15847772 -29059798 - L1ME3A LINE L1 -49 6121 5990 2163 97 0 55 chr21 15847772 15848102 -29059468 - AluSx SINE Alu 0 312 1 1422 243 83 69 chr21 15848102 15848369 -29059201 - L1ME3A LINE L1 -180 5990 5728 2229 123 0 0 chr21 15848369 15848670 -29058900 + AluSx SINE Alu 1 301 -11 1422 243 83 69 chr21 15848670 15848855 -29058715 - L1ME3A LINE L1 -442 5728 5520 2298 113 0 3 chr21 15848855 15849165 -29058405 + AluSg SINE Alu 1 309 -1 1422 243 83 69 chr21 15849165 15849260 -29058310 - L1ME3A LINE L1 -650 5520 5428 462 224 112 0 chr21 15849613 15849729 -29057841 - FLAM_C SINE Alu -9 134 6 1334 179 48 55 chr21 15849762 15850053 -29057517 - AluJo SINE Alu -6 306 18 419 276 99 52 chr21 15850570 15850802 -29056768 - MIR SINE MIR -2 260 18 472 286 123 27 chr21 15851322 15851542 -29056028 + MIR SINE MIR 22 262 0 537 129 0 0 chr21 15851845 15851938 -29055632 + (TA)n Simple_repeat Simple_repeat 2 94 0 2196 92 37 0 chr21 15851938 15852232 -29055338 - AluSg SINE Alu -5 305 1 2150 123 13 0 chr21 15852618 15852919 -29054651 - AluSx SINE Alu -7 305 1 1041 186 11 5 chr21 15852979 15853167 -29054403 - AluJb SINE Alu -26 286 98 809 146 0 42 chr21 15853184 15853328 -29054242 - AluJo SINE Alu -162 150 13 1847 168 0 3 chr21 15853562 15853859 -29053711 + AluJo SINE Alu 1 296 -16 2266 113 0 3 chr21 15854594 15854895 -29052675 - AluSx SINE Alu -12 300 1 201 287 75 43 chr21 15855551 15855645 -29051925 - L2 LINE L2 -5 3267 3171 2202 98 7 3 chr21 15855840 15856136 -29051434 - AluY SINE Alu -13 298 2 1762 156 3 41 chr21 15856361 15856675 -29050895 + AluJo SINE Alu 1 302 -10 301 289 151 7 chr21 15856679 15856831 -29050739 - L2 LINE L2 -609 2705 2532 218 264 126 11 chr21 15857422 15857509 -29050061 + MIR SINE MIR 153 249 -13 1354 207 32 84 chr21 15857754 15858137 -29049433 - MLT1A2 LTR MaLR 0 374 11 21 36 0 0 chr21 15858159 15858187 -29049383 + AT_rich Low_complexity Low_complexity 1 28 0 253 177 25 51 chr21 15858456 15858535 -29049035 - L1MC/D LINE L1 -2052 5756 5680 28 0 0 0 chr21 15858739 15858767 -29048803 + AT_rich Low_complexity Low_complexity 1 28 0 2384 139 62 58 chr21 15858791 15859108 -29048462 - L1MC1 LINE L1 0 6333 6012 2420 57 0 20 chr21 15859108 15859405 -29048165 + AluY SINE Alu 1 291 -20 2384 139 62 58 chr21 15859405 15859589 -29047981 - L1MC1 LINE L1 -321 6012 5830 1312 180 105 24 chr21 15859556 15859889 -29047681 - L1MC4a LINE L1 -368 7440 7081 * 907 120 0 8 chr21 15861718 15861851 -29045719 + FLAM_C SINE Alu 1 132 -1 362 250 73 0 chr21 15862239 15862335 -29045235 - MLT1H LTR MaLR -15 534 432 372 230 93 22 chr21 15862430 15862569 -29045001 - MLT1H LTR MaLR -286 263 115 225 0 0 0 chr21 15862910 15862935 -29044635 + (T)n Simple_repeat Simple_repeat 1 25 0 1484 106 0 34 chr21 15863268 15863476 -29044094 - AluSg/x SINE Alu -18 294 94 2212 131 3 0 chr21 15863610 15863916 -29043654 - AluSq SINE Alu -6 307 1 2258 84 202 6 chr21 15864175 15864532 -29043038 - MSTA LTR MaLR -1 427 1 21 0 0 0 chr21 15865588 15865609 -29041961 + AT_rich Low_complexity Low_complexity 1 21 0 27 29 0 0 chr21 15865889 15865923 -29041647 + AT_rich Low_complexity Low_complexity 1 34 0 382 241 156 49 chr21 15866921 15867145 -29040425 - MIR SINE MIR -14 248 1 216 233 68 117 chr21 15867145 15867251 -29040319 + MIR SINE MIR 107 204 -58 2191 102 10 0 chr21 15867912 15868205 -29039365 + AluSg SINE Alu 1 296 -14 1807 141 25 0 chr21 15868955 15869258 -29038312 + AluSx SINE Alu 1 310 0 31 0 0 0 chr21 15870739 15870770 -29036800 + AT_rich Low_complexity Low_complexity 1 31 0 2031 123 0 0 chr21 15870770 15871039 -29036531 - AluSx SINE Alu -22 290 22 2161 118 13 0 chr21 15871449 15871754 -29035816 - AluY SINE Alu -2 309 1 188 284 80 34 chr21 15872848 15872936 -29034634 - L2 LINE L2 -394 2919 2828 1073 193 55 22 chr21 15873206 15873481 -29034089 - L1MD3 LINE L1 -11 7984 7701 867 223 60 0 chr21 15873479 15873694 -29033876 - L1MC4a LINE L1 -462 7346 7119 * 377 166 201 43 chr21 15874742 15874881 -29032689 + L1ME2 LINE L1 5558 5718 -448 320 261 43 9 chr21 15874970 15875085 -29032485 + LTR65 LTR ERV1 1 119 -550 726 230 166 38 chr21 15875399 15875790 -29031780 + L1ME2 LINE L1 5713 6153 -11 25 31 0 0 chr21 15875919 15875951 -29031619 + AT_rich Low_complexity Low_complexity 1 32 0 1522 168 4 19 chr21 15875978 15876246 -29031324 - AluJo SINE Alu -25 287 24 1454 164 45 30 chr21 15877041 15877309 -29030261 - AluJb SINE Alu -27 285 14 1768 153 29 19 chr21 15877498 15877806 -29029764 - AluJb SINE Alu 0 312 2 182 356 0 17 chr21 15879783 15879842 -29027728 - MER5A DNA MER1_type -66 123 66 1495 136 30 8 chr21 15879876 15880140 -29027430 - Tigger1 DNA MER2_type -71 2347 2078 1528 156 0 8 chr21 15880155 15880392 -29027178 - AluJb SINE Alu -10 302 68 3573 145 14 6 chr21 15880392 15881025 -29026545 - Tigger1 DNA MER2_type -1314 1104 467 415 197 0 0 chr21 15881032 15881108 -29026462 + FRAM SINE Alu 55 130 -46 2227 146 27 73 chr21 15881153 15881497 -29026073 - Tigger1 DNA MER2_type -1961 457 140 2527 63 0 0 chr21 15881497 15881799 -29025771 + AluY SINE Alu 1 302 -9 2227 146 27 73 chr21 15881799 15881933 -29025637 - Tigger1 DNA MER2_type -2278 140 1 1398 171 81 48 chr21 15881969 15882048 -29025522 + MER2 DNA MER2_type 2 77 -268 755 97 89 32 chr21 15882048 15882172 -29025398 + FLAM_C SINE Alu 1 131 -2 1398 171 81 48 chr21 15882172 15882425 -29025145 + MER2 DNA MER2_type 77 345 0 21 82 0 0 chr21 15882517 15882566 -29025004 + AT_rich Low_complexity Low_complexity 1 49 0 2194 110 0 0 chr21 15882566 15882856 -29024714 - AluSx SINE Alu -6 306 17 288 0 0 0 chr21 15883120 15883152 -29024418 + (CA)n Simple_repeat Simple_repeat 2 33 0 21 0 0 0 chr21 15883661 15883682 -29023888 + AT_rich Low_complexity Low_complexity 1 21 0 207 100 0 0 chr21 15884784 15884814 -29022756 + (A)n Simple_repeat Simple_repeat 1 30 0 32 57 0 0 chr21 15885527 15885580 -29021990 + AT_rich Low_complexity Low_complexity 1 53 0 2533 60 0 0 chr21 15885963 15886265 -29021305 - AluY SINE Alu -9 302 1 847 145 15 0 chr21 15886397 15886528 -29021042 - FLAM_C SINE Alu 0 133 1 188 67 33 0 chr21 15887197 15887227 -29020343 + (TA)n Simple_repeat Simple_repeat 2 32 0 23 33 0 0 chr21 15887527 15887557 -29020013 + AT_rich Low_complexity Low_complexity 1 30 0 1055 225 7 33 chr21 15888262 15888533 -29019037 - MLT1A1 LTR MaLR -75 290 27 1132 133 8 112 chr21 15888717 15888958 -29018612 - MER20 DNA MER1_type -1 218 3 277 215 315 8 chr21 15888999 15889129 -29018441 + MIR SINE MIR 16 185 -77 2117 102 3 36 chr21 15889917 15890221 -29017349 + AluSx SINE Alu 1 294 -18 231 299 26 13 chr21 15890270 15890347 -29017223 + L3 LINE CR1 828 905 -672 925 195 112 82 chr21 15890818 15891203 -29016367 - MLT1B LTR MaLR -20 370 1 2136 107 21 0 chr21 15891464 15891754 -29015816 + AluSx SINE Alu 1 296 -16 254 88 0 0 chr21 15891848 15891882 -29015688 - U2 snRNA snRNA -154 34 1 497 314 165 18 chr21 15892211 15892612 -29014958 - L2 LINE L2 -769 2545 2086 415 248 83 8 chr21 15892612 15892745 -29014825 - L2 LINE L2 -962 2352 2210 504 48 0 0 chr21 15892826 15892889 -29014681 + (CATA)n Simple_repeat Simple_repeat 2 64 0 1689 153 17 3 chr21 15892999 15893318 -29014252 - AluJo SINE Alu 0 312 1 2202 76 0 11 chr21 15893330 15893605 -29013965 - AluY SINE Alu -14 297 26 2503 77 0 0 chr21 15893643 15893942 -29013628 + AluSx SINE Alu 1 299 -13 577 269 86 51 chr21 15894099 15894333 -29013237 + MIR SINE MIR 19 260 -2 303 281 62 23 chr21 15894389 15894517 -29013053 - MER94 DNA DNA 0 134 2 580 137 39 0 chr21 15894641 15894743 -29012827 + HY1 scRNA scRNA 7 112 0 430 103 0 0 chr21 15894944 15895002 -29012568 + Alu SINE Alu 238 295 -17 252 0 0 0 chr21 15895450 15895478 -29012092 + (T)n Simple_repeat Simple_repeat 1 28 0 2827 147 60 30 chr21 15895583 15896182 -29011388 - L1MB1 LINE L1 -109 6059 5443 200 191 95 0 chr21 15896212 15896275 -29011295 - L2 LINE L2 -1122 2192 2124 1872 105 54 11 chr21 15896392 15896669 -29010901 + AluJb SINE Alu 1 289 -23 2360 98 0 0 chr21 15897114 15897421 -29010149 - AluY SINE Alu -4 307 1 801 194 8 0 chr21 15897830 15897959 -29009611 - FLAM_C SINE Alu -13 130 1 26 0 0 0 chr21 15898010 15898036 -29009534 + AT_rich Low_complexity Low_complexity 1 26 0 1658 158 35 3 chr21 15898174 15898458 -29009112 + AluJb SINE Alu 1 293 -19 1796 188 0 0 chr21 15898596 15898888 -29008682 - AluJb SINE Alu -20 292 1 584 319 90 12 chr21 15898985 15899399 -29008171 - L1MC/D LINE L1 -1999 5809 5358 1805 130 13 27 chr21 15899399 15899699 -29007871 + AluJo SINE Alu 1 296 -16 584 319 90 12 chr21 15899699 15899716 -29007854 - L1MC/D LINE L1 -2450 5358 5344 284 0 0 27 chr21 15899758 15899795 -29007775 + (TTTG)n Simple_repeat Simple_repeat 2 37 0 943 79 0 29 chr21 15899796 15899935 -29007635 - AluSq SINE Alu -32 281 147 1050 104 0 7 chr21 15900003 15900147 -29007423 - AluSq SINE Alu -166 146 4 21 0 0 0 chr21 15900157 15900178 -29007392 + AT_rich Low_complexity Low_complexity 1 21 0 265 180 180 0 chr21 15901971 15902032 -29005538 + MIR SINE MIR 3 74 -188 284 263 0 0 chr21 15902070 15902146 -29005424 + MIR SINE MIR 185 260 -2 2238 84 24 3 chr21 15902387 15902685 -29004885 + AluSg SINE Alu 1 304 -6 341 310 60 0 chr21 15903090 15903206 -29004364 + L1ME4a LINE L1 5738 5860 -261 2351 62 0 7 chr21 15903365 15903653 -29003917 - AluSc SINE Alu -21 288 3 341 115 51 0 chr21 15904195 15904273 -29003297 + (TA)n Simple_repeat Simple_repeat 1 82 0 739 185 0 0 chr21 15904307 15904426 -29003144 - FLAM_C SINE Alu -12 131 13 545 282 118 68 chr21 15904429 15904576 -29002994 - L1MC/D LINE L1 -1101 5045 4907 8796 31 7 1 chr21 15904576 15906411 -29001159 - L1PA4 LINE L1 -1 6154 4315 545 282 118 68 chr21 15906411 15906880 -29000690 - L1MC/D LINE L1 -1239 4907 4398 388 275 128 51 chr21 15907441 15907754 -28999816 - L1ME LINE L1 -302 5819 5483 26 0 0 0 chr21 15907896 15907922 -28999648 + AT_rich Low_complexity Low_complexity 1 26 0 368 293 116 12 chr21 15908994 15909158 -28998412 + MIR SINE MIR 24 204 -58 25 0 0 0 chr21 15909159 15909184 -28998386 + AT_rich Low_complexity Low_complexity 1 25 0 836 106 152 0 chr21 15910066 15910217 -28997353 + MER2 DNA MER2_type 2 175 -170 26 30 0 0 chr21 15910218 15910251 -28997319 + AT_rich Low_complexity Low_complexity 1 33 0 255 238 70 128 chr21 15912481 15912536 -28995034 + MER5A DNA MER1_type 1 58 -125 2308 83 13 0 chr21 15912536 15912850 -28994720 + L1PA14 LINE L1 5844 6161 0 255 238 70 128 chr21 15912850 15912966 -28994604 + MER5A DNA MER1_type 58 167 -16 22 0 0 0 chr21 15913138 15913160 -28994410 + AT_rich Low_complexity Low_complexity 1 22 0 793 245 142 52 chr21 15913352 15913913 -28993657 - L1MC4a LINE L1 -494 5668 5323 1884 220 102 36 chr21 15913946 15914674 -28992896 - L1MC4a LINE L1 -818 5328 4553 276 30 0 0 chr21 15915464 15915497 -28992073 + (CATATA)n Simple_repeat Simple_repeat 2 34 0 30 0 0 0 chr21 15916029 15916059 -28991511 + AT_rich Low_complexity Low_complexity 1 30 0 1679 170 7 17 chr21 15917019 15917308 -28990262 - AluJb SINE Alu -17 295 10 2375 89 0 10 chr21 15917313 15917617 -28989953 - AluSx SINE Alu -11 301 1 858 173 0 0 chr21 15918376 15918509 -28989061 + AluJo SINE Alu 1 133 -169 2510 57 0 3 chr21 15918719 15919015 -28988555 + AluSg SINE Alu 1 295 -15 435 248 14 71 chr21 15919021 15919162 -28988408 + MIR3 SINE MIR 28 160 -48 828 233 5 16 chr21 15919198 15919391 -28988179 + AluJo SINE Alu 122 312 0 295 309 49 0 chr21 15921541 15921664 -28985906 + L2 LINE L2 2932 3060 -212 2095 96 10 14 chr21 15921999 15922292 -28985278 + AluSq SINE Alu 1 292 -21 186 344 104 21 chr21 15923661 15923757 -28983813 + MIR SINE MIR 38 141 -67 763 285 50 0 chr21 15923937 15924158 -28983412 - MIR SINE MIR 0 262 31 456 283 66 0 chr21 15924593 15924791 -28982779 - L1ME LINE L1 -348 5773 5563 1574 186 13 36 chr21 15925922 15926223 -28981347 + AluJo SINE Alu 1 294 -18 1331 167 51 19 chr21 15927404 15927715 -28979855 + L1MB8 LINE L1 5546 5866 -312 2296 167 25 15 chr21 15927715 15928179 -28979391 + L1MB8 LINE L1 5684 6162 -16 408 264 121 86 chr21 15930256 15930714 -28976856 + L1M2 LINE L1 590 1021 -5828 21 0 0 0 chr21 15931685 15931706 -28975864 + AT_rich Low_complexity Low_complexity 1 21 0 1832 185 3 0 chr21 15932299 15932596 -28974974 + AluJb SINE Alu 1 298 -14 1699 162 53 34 chr21 15932843 15933201 -28974369 + MLT1A1 LTR MaLR 1 365 0 550 148 0 11 chr21 15933226 15933314 -28974256 - MER44D DNA MER2_type 0 705 619 * 859 113 173 11 chr21 15933309 15933494 -28974076 - MER44D DNA MER2_type -123 486 2 2225 110 3 10 chr21 15933806 15934114 -28973456 + AluSx SINE Alu 1 306 -6 1973 86 0 0 chr21 15934173 15934418 -28973152 - AluY SINE Alu -12 299 55 213 39 0 0 chr21 15935135 15935161 -28972409 + (TTG)n Simple_repeat Simple_repeat 2 27 0 273 0 0 0 chr21 15935238 15935269 -28972301 - U6 snRNA snRNA -76 31 1 13314 118 26 66 chr21 15935329 15935906 -28971664 - Tigger1 DNA MER2_type -2 2416 1818 632 178 116 8 chr21 15935906 15936035 -28971535 + FRAM SINE Alu 1 141 -35 13314 118 26 66 chr21 15936035 15936362 -28971208 - Tigger1 DNA MER2_type -600 1818 1480 2186 123 3 19 chr21 15936362 15936672 -28970898 - AluSg SINE Alu -5 305 1 13314 118 26 66 chr21 15936672 15937075 -28970495 - Tigger1 DNA MER2_type -938 1480 1063 1426 121 0 206 chr21 15937075 15937448 -28970122 + AluSx SINE Alu 1 296 -16 13314 118 26 66 chr21 15937448 15938524 -28969046 - Tigger1 DNA MER2_type -1355 1063 3 1519 183 123 73 chr21 15938586 15939024 -28968546 - MLT2C2 LTR ERVL -2 518 1 1185 211 57 38 chr21 15939343 15939697 -28967873 + MLT1A1 LTR MaLR 1 365 0 242 86 0 0 chr21 15940837 15940872 -28966698 - AluJb SINE Alu -11 291 257 1344 151 0 10 chr21 15940873 15941079 -28966491 - AluJb SINE Alu -108 204 1 1368 277 82 81 chr21 15941314 15942053 -28965517 + L2 LINE L2 2153 2892 -422 1501 231 42 31 chr21 15942073 15942600 -28964970 - MLT1E2 LTR MaLR -1 504 1 774 280 118 30 chr21 15942610 15942974 -28964596 + L2 LINE L2 2910 3305 -8 438 289 120 82 chr21 15943078 15943171 -28964399 - L3 LINE CR1 -1092 485 397 858 113 60 6 chr21 15943171 15943339 -28964231 + L1MA4 LINE L1 6109 6285 -15 438 289 120 82 chr21 15943339 15943587 -28963983 - L3 LINE CR1 -1180 397 131 21 0 0 0 chr21 15944100 15944121 -28963449 + AT_rich Low_complexity Low_complexity 1 21 0 199 219 0 0 chr21 15944598 15944639 -28962931 + L2 LINE L2 3230 3270 -2 398 349 24 30 chr21 15944681 15944850 -28962720 - MIR3 SINE MIR -25 183 16 2273 105 3 0 chr21 15944912 15945208 -28962362 + AluSp SINE Alu 1 297 -16 523 143 133 0 chr21 15945365 15945463 -28962107 + AluJ SINE Alu 22 132 -180 397 324 0 29 chr21 15945946 15946037 -28961533 - L2 LINE L2 -5 3267 3180 2018 197 5 91 chr21 15946037 15946341 -28961229 - MLT2B1 LTR ERVL 0 520 286 2464 67 0 7 chr21 15946341 15946640 -28960930 - AluSx SINE Alu -15 297 1 2018 197 5 91 chr21 15946640 15946904 -28960666 - MLT2B1 LTR ERVL -234 286 1 397 324 0 29 chr21 15946904 15946948 -28960622 - L2 LINE L2 -92 3180 3136 1883 130 0 34 chr21 15946961 15947253 -28960317 + AluSx SINE Alu 27 308 -4 963 192 6 17 chr21 15947253 15947448 -28960122 + AluJ SINE Alu 134 312 0 715 164 9 0 chr21 15947529 15947639 -28959931 + FLAM_A SINE Alu 1 111 -31 300 111 0 0 chr21 15947644 15947689 -28959881 + (TAAA)n Simple_repeat Simple_repeat 4 48 0 406 239 79 92 chr21 15948069 15948538 -28959032 - L1MC5 LINE L1 -48 7913 7451 1470 160 4 4 chr21 15949712 15949949 -28957621 - AluJb SINE Alu -75 237 1 2368 66 7 7 chr21 15950423 15950724 -28956846 + AluY SINE Alu 1 301 -10 3130 157 114 32 chr21 15950848 15951120 -28956450 + LTR48 LTR ERV1 1 249 -538 1775 139 45 7 chr21 15951120 15951408 -28956162 + AluJo SINE Alu 1 299 -13 3130 157 114 32 chr21 15951408 15951862 -28955708 + LTR48 LTR ERV1 249 787 0 950 188 0 24 chr21 15952577 15952747 -28954823 - FAM SINE Alu -9 40 1 299 342 26 28 chr21 15952962 15953104 -28954466 - MIR3 SINE MIR -51 157 30 24 0 0 0 chr21 15953403 15953427 -28954143 + AT_rich Low_complexity Low_complexity 1 24 0 2217 222 24 16 chr21 15953561 15954186 -28953384 - L1M4 LINE L1 -1429 4717 4088 25 0 0 0 chr21 15954194 15954219 -28953351 + AT_rich Low_complexity Low_complexity 1 25 0 492 233 146 16 chr21 15954561 15954929 -28952641 - MLT1G3 LTR MaLR 0 555 97 1934 100 32 55 chr21 15954955 15955264 -28952306 - AluSx SINE Alu -10 302 1 455 117 0 13 chr21 15955385 15955462 -28952108 + (TTCC)n Simple_repeat Simple_repeat 1 76 0 1802 138 6 55 chr21 15955554 15955881 -28951689 + AluSx SINE Alu 1 311 -1 312 356 43 5 chr21 15955928 15956116 -28951454 + L2 LINE L2 2824 3018 -254 195 291 26 68 chr21 15956131 15956248 -28951322 + L2 LINE L2 3135 3246 -67 674 212 15 0 chr21 15956842 15956974 -28950596 + AluJo SINE Alu 1 134 -178 2632 119 46 5 chr21 15957262 15957673 -28949897 - MSTA LTR MaLR 0 428 1 9407 169 16 4 chr21 15957676 15959304 -28948266 - MSTA-int LTR MaLR -4 1647 1 2402 143 44 7 chr21 15959304 15959717 -28947853 - MSTA LTR MaLR 0 428 1 273 320 92 49 chr21 15959842 15960147 -28947423 - L2 LINE L2 -782 2532 2205 1475 226 40 0 chr21 15960147 15960322 -28947248 - AluJb SINE Alu -3 309 116 300 27 0 0 chr21 15960322 15960359 -28947211 + (TTTG)n Simple_repeat Simple_repeat 2 38 0 1475 226 40 0 chr21 15960359 15960480 -28947090 - AluJb SINE Alu -196 116 1 273 320 92 49 chr21 15960480 15960564 -28947006 - L2 LINE L2 -1109 2205 2126 422 271 123 19 chr21 15960566 15960721 -28946849 - MER5A DNA MER1_type -3 186 16 207 139 0 0 chr21 15960849 15960885 -28946685 + (GA)n Simple_repeat Simple_repeat 2 37 0 267 358 58 23 chr21 15961314 15961574 -28945996 - L2 LINE L2 -1930 1384 1116 293 253 120 0 chr21 15961725 15961800 -28945770 + MIR SINE MIR 28 111 -97 447 279 56 25 chr21 15961833 15961994 -28945576 + MER5B DNA MER1_type 12 177 -1 2022 162 20 0 chr21 15962103 15962449 -28945121 - MLT1A1 LTR MaLR -3 362 10 2073 144 38 71 chr21 15962630 15963052 -28944518 + MSTB LTR MaLR 19 426 0 388 348 105 50 chr21 15963205 15963700 -28943870 + L2 LINE L2 88 609 -2705 883 271 119 35 chr21 15963921 15964494 -28943076 - L1MC4a LINE L1 -1883 5925 5305 24 0 0 0 chr21 15964689 15964713 -28942857 + AT_rich Low_complexity Low_complexity 1 24 0 24 0 0 0 chr21 15964723 15964747 -28942823 + AT_rich Low_complexity Low_complexity 1 24 0 874 204 74 4 chr21 15965132 15965362 -28942208 + ORSL DNA AcHobo 30 275 0 1139 154 200 17 chr21 15965397 15965637 -28941933 - AluJb SINE Alu -18 284 1 262 283 115 32 chr21 15965943 15966068 -28941502 - MLT1H1 LTR MaLR 0 555 415 316 362 36 0 chr21 15966077 15966215 -28941355 + L2 LINE L2 1860 2002 -1312 1832 251 22 28 chr21 15966311 15966810 -28940760 - MLT1D LTR MaLR 0 505 10 265 312 65 0 chr21 15967029 15967106 -28940464 - L2 LINE L2 -2893 421 340 901 154 64 0 chr21 15967120 15967276 -28940294 + FAM SINE Alu 1 41 -8 307 273 10 0 chr21 15968490 15968589 -28938981 + (TA)n Simple_repeat Simple_repeat 2 101 0 1459 149 48 10 chr21 15968591 15968880 -28938690 - L1MA7 LINE L1 -5 6286 5987 290 324 44 15 chr21 15969642 15969778 -28937792 + MIR SINE MIR 110 249 -13 22 0 0 0 chr21 15969878 15969900 -28937670 + AT_rich Low_complexity Low_complexity 1 22 0 4943 62 23 0 chr21 15970530 15971131 -28936439 + L1PA7 LINE L1 5534 6148 -6 2409 80 6 10 chr21 15971404 15971718 -28935852 - AluSp SINE Alu 0 313 1 528 232 76 45 chr21 15971753 15971977 -28935593 - HAL1 LINE L1 -1 2506 2276 485 267 48 79 chr21 15972045 15972375 -28935195 - HAL1 LINE L1 -232 2275 1956 2600 239 75 60 chr21 15972419 15973463 -28934107 - HAL1 LINE L1 -629 1878 820 4126 162 27 7 chr21 15973543 15974240 -28933330 - MER50 LTR ERV1 -23 711 1 1014 186 5 29 chr21 15974240 15974442 -28933128 + MER3 DNA MER1_type 13 209 0 355 312 235 23 chr21 15974450 15974671 -28932899 - HAL1 LINE L1 -1804 703 436 407 282 102 93 chr21 15974708 15974875 -28932695 - HAL1 LINE L1 -2171 336 172 2304 85 14 0 chr21 15974875 15975168 -28932402 - AluSc SINE Alu -12 297 1 407 282 102 93 chr21 15975168 15975182 -28932388 - HAL1 LINE L1 -2335 172 160 1609 147 15 33 chr21 15975182 15975454 -28932116 - AluJo SINE Alu -45 267 1 407 282 102 93 chr21 15975454 15975594 -28931976 - HAL1 LINE L1 -2347 160 11 1719 194 130 52 chr21 15977045 15977712 -28929858 - LTR48 LTR ERV1 -7 637 1 408 333 94 9 chr21 15977749 15977962 -28929608 - MIR SINE MIR -12 250 20 2184 95 0 0 chr21 15979244 15979545 -28928025 + AluSc SINE Alu 6 306 0 2034 141 3 3 chr21 15979567 15979873 -28927697 + AluSq SINE Alu 1 306 -7 2727 23 0 0 chr21 15980349 15980652 -28926918 + AluY SINE Alu 1 303 -8 284 306 130 0 chr21 15980690 15980798 -28926772 - L2 LINE L2 0 3272 3151 590 202 9 0 chr21 15980936 15981045 -28926525 + MER63 DNA MER1_type 948 1057 -3 240 356 149 0 chr21 15981572 15981760 -28925810 - L2 LINE L2 -574 2740 2525 417 298 19 0 chr21 15981823 15981927 -28925643 + L2 LINE L2 3166 3271 -1 3406 154 14 30 chr21 15981983 15982651 -28924919 + L1MC1 LINE L1 5173 5828 -505 1284 179 49 0 chr21 15982651 15982875 -28924695 + AluJb SINE Alu 1 235 -77 1588 145 74 27 chr21 15982875 15983171 -28924399 + L1MC1 LINE L1 5841 6150 -183 1510 180 194 19 chr21 15983171 15983593 -28923977 + LTR54B LTR ERV1 1 496 -2 697 186 5 62 chr21 15983593 15983674 -28923896 + L1MC1 LINE L1 6150 6234 -99 192 40 0 0 chr21 15983674 15983699 -28923871 + (TG)n Simple_repeat Simple_repeat 2 26 0 697 186 5 62 chr21 15983699 15983798 -28923772 + L1MC1 LINE L1 6234 6321 -12 2272 107 0 0 chr21 15983798 15984097 -28923473 + AluY SINE Alu 1 299 -12 697 186 5 62 chr21 15984097 15984109 -28923461 + L1MC1 LINE L1 6321 6332 -1 1544 249 60 10 chr21 15984481 15984883 -28922687 - LTR51 LTR ERV1 -9 662 241 1848 137 68 30 chr21 15985014 15985351 -28922219 - MER61C LTR ERV1 0 434 85 253 293 122 0 chr21 15985399 15985481 -28922089 - MER101B LTR ERV1 -469 101 10 2116 96 48 0 chr21 15985954 15986246 -28921324 - AluSq SINE Alu -7 306 1 837 128 0 38 chr21 15986958 15987091 -28920479 + FLAM_C SINE Alu 1 128 -15 243 258 0 0 chr21 15987188 15987254 -28920316 - MIR SINE MIR -56 206 141 2102 108 17 3 chr21 15987404 15987692 -28919878 - AluSg SINE Alu -18 292 1 484 281 65 7 chr21 15987696 15987835 -28919735 - MIR SINE MIR -114 148 2 235 256 26 26 chr21 15988046 15988124 -28919446 - MER117 DNA MER1_type -117 80 3 198 0 0 0 chr21 15988171 15988193 -28919377 + (TC)n Simple_repeat Simple_repeat 1 22 0 1254 156 14 18 chr21 15988262 15988480 -28919090 + MLT1B LTR MaLR 1 217 -173 889 175 75 18 chr21 15988494 15988719 -28918851 + MER39 LTR ERV1 1 281 -426 * 1990 130 45 60 chr21 15988699 15988938 -28918632 + MER39 LTR ERV1 175 416 -291 2278 128 0 0 chr21 15988938 15989250 -28918320 - AluSx SINE Alu 0 312 1 1990 130 45 60 chr21 15989250 15989406 -28918164 + MER39 LTR ERV1 416 707 0 766 206 31 12 chr21 15989406 15989566 -28918004 + MLT1B LTR MaLR 228 390 0 1831 151 34 7 chr21 15990174 15990465 -28917105 + AluJo SINE Alu 1 299 -13 249 139 0 0 chr21 15991543 15991586 -28915984 + (A)n Simple_repeat Simple_repeat 1 43 0 465 66 40 26 chr21 15992775 15992851 -28914719 + MADE1 DNA Mariner 2 78 -2 5175 72 25 15 chr21 15993043 15993465 -28914105 + PABL_A LTR ERV1 1 433 -227 2270 108 3 13 chr21 15993465 15993780 -28913790 + AluSx SINE Alu 1 312 0 5175 72 25 15 chr21 15993780 15994011 -28913559 + PABL_A LTR ERV1 433 660 0 325 264 11 154 chr21 15994264 15994387 -28913183 - MIR SINE MIR -10 252 113 4120 187 39 53 chr21 15994387 15995354 -28912216 - LTR13 LTR ERVK 0 954 1 325 264 11 154 chr21 15995354 15995423 -28912147 - MIR SINE MIR -149 113 108 2305 83 0 30 chr21 15995423 15995724 -28911846 + AluY SINE Alu 1 292 -19 325 264 11 154 chr21 15995724 15995803 -28911767 - MIR SINE MIR -154 108 19 3411 123 86 2 chr21 15995940 15996426 -28911144 + MER1A DNA MER1_type 1 527 0 2338 82 3 0 chr21 15997599 15997892 -28909678 + AluSg SINE Alu 5 298 -12 921 217 21 77 chr21 15998137 15998174 -28909396 - MER58A DNA MER1_type -2196 224 187 2478 60 0 3 chr21 15998174 15998473 -28909097 + AluY SINE Alu 1 298 -13 921 217 21 77 chr21 15998473 15998670 -28908900 - MER58A DNA MER1_type -2233 187 3 3423 110 41 20 chr21 15999369 15999969 -28907601 - MER4B LTR ERV1 0 779 2 260 266 81 58 chr21 15999985 16000084 -28907486 + MER5B DNA MER1_type 61 161 -28 1546 123 71 121 chr21 16000172 16000537 -28907033 - LTR49 LTR ERV1 0 595 249 518 107 0 0 chr21 16000534 16000609 -28906961 - LTR49 LTR ERV1 -266 329 255 * 1891 98 115 0 chr21 16000612 16000907 -28906663 - LTR49 LTR ERV1 -266 329 1 194 395 0 0 chr21 16000912 16000993 -28906577 + MIR SINE MIR 48 128 -134 26 64 0 0 chr21 16001253 16001300 -28906270 + AT_rich Low_complexity Low_complexity 1 47 0 14968 196 42 13 chr21 16001301 16001658 -28905912 - L1PB1 LINE L1 -1 6866 6521 441 0 0 0 chr21 16001658 16001707 -28905863 + (TG)n Simple_repeat Simple_repeat 2 50 0 14968 196 42 13 chr21 16001707 16003117 -28904453 - L1PB1 LINE L1 -346 6521 5154 243 0 0 0 chr21 16003117 16003144 -28904426 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 14968 196 42 13 chr21 16003144 16007794 -28899776 - L1PB1 LINE L1 -1713 5154 101 4140 136 30 19 chr21 16008077 16008704 -28898866 + MER41B LTR ERV1 1 634 -1 2488 40 7 3 chr21 16009194 16009492 -28898078 - AluY SINE Alu -12 299 1 2266 118 0 0 chr21 16010330 16010636 -28896934 - AluSg1 SINE Alu -3 306 1 2516 51 3 16 chr21 16011105 16011417 -28896153 - AluY SINE Alu -3 308 1 1925 129 0 41 chr21 16011933 16012054 -28895516 - AluSx SINE Alu 0 302 178 7681 81 2 1 chr21 16012054 16013021 -28894549 - LTR5 LTR ERVK -1 968 1 1925 129 0 41 chr21 16013021 16013213 -28894357 - AluSx SINE Alu -124 178 1 269 276 95 59 chr21 16013268 16013453 -28894117 + MER5A DNA MER1_type 2 178 0 384 22 0 0 chr21 16013550 16013595 -28893975 + (TTTA)n Simple_repeat Simple_repeat 3 47 0 245 342 43 34 chr21 16013951 16014068 -28893502 + L2 LINE L2 3139 3256 -16 625 233 68 34 chr21 16014223 16014429 -28893141 - LTR7 LTR ERV1 0 450 238 603 141 20 107 chr21 16014882 16015031 -28892539 - LTR7 LTR ERV1 -314 136 1 285 286 61 20 chr21 16015130 16015228 -28892342 - L2 LINE L2 -84 3229 3128 501 289 64 71 chr21 16015231 16015679 -28891891 - L2 LINE L2 -118 3195 2748 2151 112 33 3 chr21 16015679 16015983 -28891587 - AluSp SINE Alu 0 313 1 501 289 64 71 chr21 16015983 16016017 -28891553 - L2 LINE L2 -565 2748 2715 2304 120 0 0 chr21 16016123 16016432 -28891138 + AluSg SINE Alu 1 309 -1 434 306 103 98 chr21 16016432 16016587 -28890983 - L2 LINE L2 -842 2472 2319 2060 133 0 0 chr21 16016587 16016872 -28890698 - AluSx SINE Alu -27 285 1 1762 168 0 30 chr21 16016880 16017184 -28890386 - AluJb SINE Alu -17 295 1 434 306 103 98 chr21 16017184 16017408 -28890162 - L2 LINE L2 -1001 2313 2079 1422 186 29 26 chr21 16017438 16017744 -28889826 - MER21B LTR ERV1 0 863 557 2256 96 3 0 chr21 16018173 16018466 -28889104 - AluSc SINE Alu -12 297 4 4986 114 20 44 chr21 16018697 16019485 -28888085 - MER4E LTR ERV1 -10 769 1 317 133 333 0 chr21 16019500 16019575 -28887995 - MER21B LTR ERV1 -305 558 459 238 61 0 0 chr21 16019573 16019606 -28887964 + Tigger1 DNA MER2_type 1444 1476 -942 * 2069 111 7 14 chr21 16019613 16019901 -28887669 + AluSx SINE Alu 6 291 -21 2681 183 49 0 chr21 16019908 16020361 -28887209 - MER21B LTR ERV1 -388 475 1 217 273 18 0 chr21 16020374 16020429 -28887141 - L2 LINE L2 -1369 1945 1890 212 146 0 49 chr21 16020859 16020900 -28886670 + (TATG)n Simple_repeat Simple_repeat 1 39 0 2504 132 22 79 chr21 16020900 16021354 -28886216 + MSTA LTR MaLR 1 428 0 392 0 21 0 chr21 16021357 16021405 -28886165 + (TG)n Simple_repeat Simple_repeat 2 50 0 2436 74 3 0 chr21 16021411 16021707 -28885863 - AluSp SINE Alu -15 298 2 277 100 20 0 chr21 16021819 16021869 -28885701 - L1MB5 LINE L1 -25 6149 6099 962 121 5 27 chr21 16021869 16022060 -28885510 + MER4B LTR ERV1 1 225 -385 4343 208 56 16 chr21 16022072 16023075 -28884495 + L1PBa LINE L1 6 1048 -5815 9467 151 49 3 chr21 16023076 16025685 -28881885 + L1PBa LINE L1 1093 3972 -2890 1019 94 7 7 chr21 16025690 16025828 -28881742 - L1PA11 LINE L1 -2 6172 6035 862 46 55 0 chr21 16025828 16025937 -28881633 - MER85 DNA T2_type -24 115 1 1077 79 6 18 chr21 16025937 16026101 -28881469 - L1PA11 LINE L1 -121 6053 5892 2032 128 18 98 chr21 16026104 16026503 -28881067 + MER4B LTR ERV1 188 554 -56 627 83 73 28 chr21 16026483 16026592 -28880978 + MER4D LTR ERV1 759 872 0 * 263 190 17 35 chr21 16026592 16026650 -28880920 - L1MB5 LINE L1 -72 6102 6046 1069 154 0 18 chr21 16026651 16026820 -28880750 + FRAM SINE Alu 1 163 -13 1192 194 75 18 chr21 16026864 16027143 -28880427 - L1MB5 LINE L1 -178 5996 5702 * 7123 175 17 38 chr21 16027112 16029585 -28877985 - L1MB2 LINE L1 -38 6133 3718 240 171 0 53 chr21 16030135 16030211 -28877359 + CT-rich Low_complexity Low_complexity 4 75 0 1415 201 5 93 chr21 16030407 16030850 -28876720 - L1MA9 LINE L1 -30 6282 5879 4917 101 23 1 chr21 16030870 16031561 -28876009 - THE1B-int LTR MaLR -874 706 1 1646 141 100 27 chr21 16031561 16031860 -28875710 - THE1B LTR MaLR 0 364 44 1954 134 25 0 chr21 16033222 16033505 -28874065 - AluSx SINE Alu -22 290 1 1692 178 21 45 chr21 16033705 16034042 -28873528 - MLT1C LTR MaLR -2 465 137 4889 160 14 182 chr21 16034044 16034725 -28872845 + L1PB4 LINE L1 3000 3793 -2353 1301 159 0 32 chr21 16034725 16034945 -28872625 - AluSx SINE Alu -99 213 1 4889 160 14 182 chr21 16034945 16035621 -28871949 + L1PB4 LINE L1 3793 4261 -1885 2824 88 5 39 chr21 16035621 16035660 -28871910 - THE1C LTR MaLR 0 375 336 2347 61 14 7 chr21 16035660 16035956 -28871614 + AluY SINE Alu 1 298 -13 2824 88 5 39 chr21 16035956 16036304 -28871266 - THE1C LTR MaLR -39 336 1 4889 160 14 182 chr21 16036304 16036466 -28871104 + L1PB4 LINE L1 4261 4448 -1698 7019 58 4 42 chr21 16036474 16037466 -28870104 - SVA Other Other 0 1386 433 1292 74 10 93 chr21 16037534 16038201 -28869369 - SVA Other Other -520 866 430 2706 76 23 69 chr21 16038265 16038944 -28868626 - SVA Other Other -520 866 393 5003 167 21 19 chr21 16039006 16040471 -28867099 + L1PB4 LINE L1 4435 5915 -241 2129 106 0 33 chr21 16040471 16040772 -28866798 + AluSg SINE Alu 1 291 -19 5003 167 21 19 chr21 16040772 16041014 -28866556 + L1PB4 LINE L1 5915 6155 -1 648 201 21 14 chr21 16041014 16041158 -28866412 - MLT1C LTR MaLR -319 148 4 400 350 49 74 chr21 16041367 16041664 -28865906 + L2 LINE L2 2488 2772 -542 599 163 43 113 chr21 16041664 16041805 -28865765 + FLAM_A SINE Alu 1 131 -2 400 350 49 74 chr21 16041805 16041938 -28865632 + L2 LINE L2 2772 2907 -407 355 306 179 8 chr21 16041931 16042065 -28865505 - MER5A DNA MER1_type -7 182 26 * 386 289 78 121 chr21 16042118 16042464 -28865106 + L2 LINE L2 2932 3262 -10 332 123 0 18 chr21 16042465 16042522 -28865048 + MER50 LTR ERV1 499 554 -180 1257 52 0 0 chr21 16042540 16042694 -28864876 - AluY SINE Alu -14 297 144 740 172 7 40 chr21 16042694 16042845 -28864725 + MER50 LTR ERV1 587 732 -2 341 180 0 0 chr21 16042845 16042906 -28864664 + MER50-int LTR ERV1 43 103 -7102 243 146 0 0 chr21 16042908 16042949 -28864621 + (TAAA)n Simple_repeat Simple_repeat 2 42 0 481 192 20 20 chr21 16043883 16043982 -28863588 - MER63 DNA MER1_type -311 751 27 603 298 64 17 chr21 16044206 16044548 -28863022 - LTR16A LTR ERVL 0 450 18 2176 258 25 25 chr21 16045072 16045627 -28861943 + MLT1H1 LTR MaLR 1 555 0 1709 149 29 11 chr21 16045687 16045968 -28861602 - AluJb SINE Alu 0 312 27 340 248 108 16 chr21 16046883 16047012 -28860558 - MIR3 SINE MIR -14 194 54 292 246 63 63 chr21 16047064 16047206 -28860364 - L2 LINE L2 0 3313 3172 297 243 14 0 chr21 16047781 16047855 -28859715 + MER116 DNA Mariner 1 75 -5 232 246 66 0 chr21 16047922 16047983 -28859587 + MIR SINE MIR 87 151 -111 2471 50 0 7 chr21 16048022 16048325 -28859245 + AluY SINE Alu 1 301 -10 2467 143 25 0 chr21 16048349 16048742 -28858828 - L1 LINE L1 -981 5165 4763 1561 250 215 17 chr21 16048742 16049572 -28857998 + MER69 DNA AcHobo 50 2371 -155 843 169 6 52 chr21 16049575 16049791 -28857779 - AluJb SINE Alu 0 312 134 2418 73 3 3 chr21 16049791 16050093 -28857477 - AluY SINE Alu -9 302 1 451 206 66 15 chr21 16050117 16050253 -28857317 + MER69 DNA AcHobo 2375 2517 -9 491 249 72 76 chr21 16050713 16050950 -28856620 + MLT1J LTR MaLR 1 276 -213 302 257 28 32 chr21 16051107 16051252 -28856318 + MIR SINE MIR 61 200 -61 1653 211 60 0 chr21 16051352 16051754 -28855816 - L1MD3 LINE L1 0 7995 7570 2501 124 81 2 chr21 16051769 16052163 -28855407 - MSTA LTR MaLR 0 428 4 231 250 0 0 chr21 16052626 16052678 -28854892 + GA-rich Low_complexity Low_complexity 3 54 0 213 310 38 38 chr21 16053399 16053449 -28854121 + L2 LINE L2 2471 2520 -794 2521 41 0 3 chr21 16053449 16053743 -28853827 - AluY SINE Alu -18 293 1 213 310 38 38 chr21 16053743 16053850 -28853720 + L2 LINE L2 2519 2628 -686 1560 194 32 0 chr21 16054546 16054824 -28852746 - AluJo SINE Alu -25 287 1 2332 91 0 7 chr21 16055143 16055450 -28852120 - AluSc SINE Alu -4 305 1 1526 251 43 14 chr21 16056373 16056795 -28850775 - MER57B LTR ERV1 0 434 1 2150 153 21 30 chr21 16057357 16057840 -28849730 - MER39 LTR ERV1 0 707 178 734 188 9 0 chr21 16057844 16057956 -28849614 + AluJb SINE Alu 6 118 -194 23 33 0 0 chr21 16057962 16057992 -28849578 + AT_rich Low_complexity Low_complexity 1 30 0 949 159 94 0 chr21 16057992 16058162 -28849408 - MER39 LTR ERV1 -513 194 9 3799 139 29 10 chr21 16059511 16060147 -28847423 - MER39B LTR ERV1 -1 630 1 7225 153 31 41 chr21 16060203 16061631 -28845939 - MER39B-int LTR ERV1 -148 6183 4769 1537 188 14 24 chr21 16061627 16061915 -28845655 - MER39B-int LTR ERV1 -6046 285 1 * 752 187 116 30 chr21 16061919 16061996 -28845574 - MER39B LTR ERV1 -3 650 581 1598 175 24 7 chr21 16061996 16062287 -28845283 - AluJo SINE Alu -16 296 1 752 187 116 30 chr21 16062287 16062407 -28845163 - MER39B LTR ERV1 -72 581 436 655 62 0 0 chr21 16062409 16062489 -28845081 + AluSx SINE Alu 2 81 -231 2297 98 0 22 chr21 16062490 16062805 -28844765 + AluY SINE Alu 1 308 -3 1661 109 30 0 chr21 16062805 16063034 -28844536 + AluSx SINE Alu 73 309 -3 2687 134 24 61 chr21 16063034 16063329 -28844241 - MER39B LTR ERV1 -208 445 172 2643 51 0 3 chr21 16063329 16063641 -28843929 - AluY SINE Alu 0 311 1 2687 134 24 61 chr21 16063641 16063807 -28843763 - MER39B LTR ERV1 -481 172 1 876 193 74 73 chr21 16063807 16064111 -28843459 - MER39 LTR ERV1 -72 629 267 566 215 210 56 chr21 16064719 16065176 -28842394 - LTR48 LTR ERV1 -16 771 157 277 233 102 0 chr21 16065146 16065248 -28842322 - LTR48B LTR ERV1 -587 120 1 * 266 156 0 0 chr21 16065880 16065925 -28841645 + T-rich Low_complexity Low_complexity 1 45 0 19082 33 1 1 chr21 16065927 16070127 -28837443 - L1PA4 LINE L1 0 6155 1957 21 57 0 0 chr21 16071222 16071257 -28836313 + AT_rich Low_complexity Low_complexity 1 35 0 216 158 0 0 chr21 16071395 16071433 -28836137 + (TATG)n Simple_repeat Simple_repeat 3 40 0 2048 161 59 12 chr21 16071436 16072059 -28835511 + MER39 LTR ERV1 1 707 0 207 294 29 0 chr21 16072061 16072129 -28835441 + (TATG)n Simple_repeat Simple_repeat 2 71 0 757 273 43 45 chr21 16072204 16072778 -28834792 - L1MC4a LINE L1 -1841 5967 5342 353 324 80 74 chr21 16072906 16073091 -28834479 - L1MC4a LINE L1 -922 5224 5042 1714 196 14 3 chr21 16073091 16073387 -28834183 - AluJb SINE Alu -11 301 3 353 324 80 74 chr21 16073387 16073584 -28833986 - L1MC4a LINE L1 -1104 5042 4848 1704 189 0 0 chr21 16073584 16073869 -28833701 - AluJo SINE Alu -25 287 3 1929 162 0 7 chr21 16073877 16074180 -28833390 - AluJb SINE Alu -11 301 1 353 324 80 74 chr21 16074180 16074470 -28833100 - L1MC4a LINE L1 -1304 4842 4533 551 115 0 0 chr21 16074495 16074582 -28832988 - AluS SINE Alu -5 306 220 4097 120 120 74 chr21 16074587 16075992 -28831578 - pTR5 LTR ERV1 0 2438 761 570 209 9 0 chr21 16075992 16076097 -28831473 - AluSp SINE Alu -72 241 136 1755 168 106 26 chr21 16076209 16076572 -28830998 + MER39 LTR ERV1 1 333 -374 1872 193 55 24 chr21 16076572 16076991 -28830579 + MSTB1 LTR MaLR 1 432 0 1755 168 106 26 chr21 16076991 16077239 -28830331 + MER39 LTR ERV1 333 707 0 282 179 15 0 chr21 16077402 16077469 -28830101 - L1MA8 LINE L1 -2 6289 6222 276 136 0 0 chr21 16077470 16077514 -28830056 - Alu SINE Alu -259 44 1 3063 179 39 23 chr21 16077575 16078268 -28829302 + MER67C LTR ERV1 7 710 0 715 232 67 74 chr21 16078276 16078573 -28828997 + MLT1J LTR MaLR 217 511 0 1492 208 61 14 chr21 16079700 16080046 -28827524 + MLT1A1 LTR MaLR 1 362 -3 917 176 7 7 chr21 16080513 16080666 -28826904 - FRAM SINE Alu -4 172 20 327 310 94 35 chr21 16080702 16081044 -28826526 - L1MC4a LINE L1 -1907 5901 5540 255 31 0 0 chr21 16082392 16082424 -28825146 + (CA)n Simple_repeat Simple_repeat 2 33 0 660 222 138 6 chr21 16082586 16082753 -28824817 - MER5A DNA MER1_type 0 189 1 75 45 0 0 chr21 16083216 16083326 -28824244 + AT_rich Low_complexity Low_complexity 1 110 0 430 210 70 0 chr21 16083326 16083426 -28824144 - MER45 DNA AcHobo -61 117 11 269 220 0 0 chr21 16083635 16083685 -28823885 + MER5A DNA MER1_type 9 58 -131 21 0 0 56 chr21 16083952 16083969 -28823601 + AT_rich Low_complexity Low_complexity 1 17 -17 2516 61 0 3 chr21 16083969 16084281 -28823289 + AluY SINE Alu 1 311 0 21 0 0 56 chr21 16084281 16084299 -28823271 + AT_rich Low_complexity Low_complexity 17 34 0 22 70 0 0 chr21 16084316 16084359 -28823211 + AT_rich Low_complexity Low_complexity 1 43 0 203 289 19 0 chr21 16084780 16084832 -28822738 + MIR SINE MIR 81 133 -75 1566 183 20 22 chr21 16084911 16085266 -28822304 - MLT1A1 LTR MaLR -11 354 1 30462 104 11 56 chr21 16087612 16094055 -28813515 - L1PA7 LINE L1 0 6154 12 491 255 115 5 chr21 16094499 16094691 -28812879 + MIR SINE MIR 22 234 -28 24 32 0 0 chr21 16094705 16094736 -28812834 + AT_rich Low_complexity Low_complexity 1 31 0 246 62 0 0 chr21 16094845 16094877 -28812693 + (TATG)n Simple_repeat Simple_repeat 4 35 0 686 284 110 0 chr21 16095664 16095900 -28811670 + MIR SINE MIR 1 262 0 38 22 0 0 chr21 16096246 16096291 -28811279 + AT_rich Low_complexity Low_complexity 1 45 0 2385 103 3 0 chr21 16096335 16096647 -28810923 - AluSq SINE Alu 0 313 1 539 245 14 0 chr21 16096720 16096859 -28810711 - L1MC4 LINE L1 -658 7384 7244 1033 235 199 19 chr21 16096865 16097389 -28810181 - L1MC4 LINE L1 -957 7085 6468 444 205 27 18 chr21 16097433 16097545 -28810025 + MER4A LTR ERV1 1 113 -551 1423 246 52 62 chr21 16097567 16098149 -28809421 + LTR34 LTR ERV1 104 679 -20 210 71 0 0 chr21 16099771 16099799 -28807771 + (CAAAC)n Simple_repeat Simple_repeat 2 29 0 1778 166 41 19 chr21 16100930 16101297 -28806273 + MLT2D LTR ERVL 38 412 -2 439 199 183 8 chr21 16101943 16102074 -28805496 - MIR3 SINE MIR -14 194 41 200 333 142 43 chr21 16102883 16103325 -28804245 + L2 LINE L2 1328 1846 -1468 2028 196 23 15 chr21 16103325 16103718 -28803852 - MSTD LTR MaLR 0 396 1 200 333 142 43 chr21 16103718 16103873 -28803697 + L2 LINE L2 1846 1984 -1330 1924 168 0 22 chr21 16104152 16104467 -28803103 - AluJo SINE Alu 0 312 5 291 208 139 0 chr21 16104696 16104797 -28802773 - LTR67 LTR ERVL -10 547 433 821 236 82 71 chr21 16105875 16106163 -28801407 + L1ME2 LINE L1 5711 6007 -157 2240 103 3 0 chr21 16106163 16106455 -28801115 + AluSx SINE Alu 1 293 -19 821 236 82 71 chr21 16106455 16106615 -28800955 + L1ME2 LINE L1 6007 6164 0 306 0 0 0 chr21 16107112 16107146 -28800424 + (CA)n Simple_repeat Simple_repeat 1 34 0 23 0 0 0 chr21 16107383 16107406 -28800164 + AT_rich Low_complexity Low_complexity 1 23 0 26 0 0 0 chr21 16110855 16110881 -28796689 + AT_rich Low_complexity Low_complexity 1 26 0 452 322 92 11 chr21 16111818 16111992 -28795578 + MIR SINE MIR 29 216 -46 313 302 42 0 chr21 16112057 16112153 -28795417 + MIR SINE MIR 50 149 -113 498 232 38 63 chr21 16112206 16112521 -28795049 + L1MC5 LINE L1 7630 7936 -25 305 154 34 7 chr21 16112643 16112879 -28794691 + AluJb SINE Alu 1 296 -4 447 237 103 43 chr21 16113295 16113331 -28794239 + MER112 DNA MER1_type 6 38 -222 1904 143 13 7 chr21 16113331 16113631 -28793939 - AluJo SINE Alu -10 302 1 447 237 103 43 chr21 16113631 16113826 -28793744 + MER112 DNA MER1_type 38 251 -9 35 0 0 0 chr21 16115766 16115801 -28791769 + AT_rich Low_complexity Low_complexity 1 35 0 21 36 0 0 chr21 16116184 16116212 -28791358 + AT_rich Low_complexity Low_complexity 1 28 0 193 296 54 85 chr21 16117176 16117493 -28790077 + L2 LINE L2 2304 2610 -704 392 335 209 19 chr21 16117496 16117702 -28789868 + L2 LINE L2 3027 3271 -1 23 0 0 0 chr21 16117704 16117727 -28789843 + AT_rich Low_complexity Low_complexity 1 23 0 4265 58 74 71 chr21 16118757 16119133 -28788437 + L1PA7 LINE L1 5491 5871 -283 2538 48 0 0 chr21 16119133 16119428 -28788142 - AluY SINE Alu -16 295 1 4265 58 74 71 chr21 16119428 16119712 -28787858 + L1PA7 LINE L1 5871 6153 -1 1829 149 0 11 chr21 16120030 16120305 -28787265 - AluSx SINE Alu -23 289 18 182 333 17 0 chr21 16120852 16120912 -28786658 - L3b LINE CR1 -22 1561 1501 1585 176 34 20 chr21 16121097 16121392 -28786178 + AluJb SINE Alu 1 299 -13 804 177 109 21 chr21 16122893 16123085 -28784485 + MER3 DNA MER1_type 1 209 0 2186 119 0 0 chr21 16123186 16123472 -28784098 - AluSq SINE Alu -27 286 1 2118 105 4 4 chr21 16124415 16124691 -28782879 + AluSq SINE Alu 1 276 -37 1362 145 200 7 chr21 16124982 16125305 -28782265 + MSTA LTR MaLR 1 417 -11 5725 162 22 39 chr21 16125314 16126467 -28781103 + MSTA-int LTR MaLR 3 1135 -445 1155 125 29 19 chr21 16126467 16126675 -28780895 + MSTA-int LTR MaLR 1371 1580 0 1778 150 161 6 chr21 16126675 16127036 -28780534 + MSTA LTR MaLR 1 417 -11 467 281 41 6 chr21 16127501 16127672 -28779898 + L2 LINE L2 3133 3309 -4 22 35 0 0 chr21 16128137 16128166 -28779404 + AT_rich Low_complexity Low_complexity 1 29 0 423 293 61 7 chr21 16129038 16129185 -28778385 + MIR SINE MIR 81 235 -27 1633 177 77 32 chr21 16130201 16130386 -28777184 + MSTD LTR MaLR 1 176 -220 2473 80 0 0 chr21 16130386 16130697 -28776873 + AluY SINE Alu 1 311 0 1633 177 77 32 chr21 16130697 16130890 -28776680 + MSTD LTR MaLR 176 396 0 1050 156 68 5 chr21 16131472 16131664 -28775906 - MER46A DNA MER2_type 0 236 33 440 274 120 0 chr21 16131723 16131840 -28775730 + FLAM_A SINE Alu 10 140 -2 2635 132 21 9 chr21 16132298 16132721 -28774849 - MSTA LTR MaLR 0 428 1 2262 105 7 0 chr21 16133523 16133817 -28773753 - AluSp SINE Alu -17 296 1 583 336 34 8 chr21 16134373 16134608 -28772962 + MIR SINE MIR 1 241 -21 341 239 123 15 chr21 16134603 16134733 -28772837 + MIR3 SINE MIR 63 206 -2 * 730 206 0 15 chr21 16134843 16134974 -28772596 - FLAM_A SINE Alu -2 131 3 22 0 0 0 chr21 16135513 16135535 -28772035 + AT_rich Low_complexity Low_complexity 1 22 0 21 36 0 0 chr21 16137236 16137264 -28770306 + GC_rich Low_complexity Low_complexity 1 28 0 24 32 0 0 chr21 16137528 16137559 -28770011 + GC_rich Low_complexity Low_complexity 1 31 0 224 242 30 15 chr21 16138000 16138066 -28769504 - MIR SINE MIR -103 105 39 480 299 147 0 chr21 16138272 16138429 -28769141 + MER5A DNA MER1_type 9 188 -1 956 251 67 6 chr21 16138713 16139044 -28768526 - L1ME2 LINE L1 -6 6158 5808 1415 147 4 4 chr21 16139045 16139283 -28768287 - MSTB1 LTR MaLR -1 431 194 32 0 0 0 chr21 16139292 16139324 -28768246 + AT_rich Low_complexity Low_complexity 1 32 0 385 227 20 80 chr21 16139324 16139474 -28768096 - MSTB1 LTR MaLR -239 187 47 1768 178 3 13 chr21 16139477 16139781 -28767789 + AluJb SINE Alu 5 305 -7 1736 231 159 14 chr21 16139781 16140297 -28767273 + MLT1E2 LTR MaLR 27 617 -9 997 128 64 0 chr21 16140957 16141113 -28766457 + THE1B LTR MaLR 199 364 0 1952 137 79 0 chr21 16141289 16141670 -28765900 - Tigger3(Golem) DNA MER2_type -150 2879 2469 1965 158 104 15 chr21 16141672 16142065 -28765505 - MSTA LTR MaLR 0 428 1 4010 108 24 14 chr21 16142065 16142703 -28764867 - MSTA-int LTR MaLR 0 1580 937 2002 134 152 8 chr21 16143451 16143825 -28763745 + MSTA LTR MaLR 1 428 0 314 235 15 96 chr21 16144283 16144350 -28763220 - MLT1J LTR MaLR -9 502 450 2032 139 0 13 chr21 16144350 16144653 -28762917 + AluJb SINE Alu 1 299 -13 314 235 15 96 chr21 16144653 16144721 -28762849 - MLT1J LTR MaLR -61 450 378 471 252 19 0 chr21 16144747 16144854 -28762716 - AluSg/x SINE Alu -6 303 195 314 253 105 11 chr21 16144878 16144973 -28762597 - MLT1J LTR MaLR -407 104 1 1926 145 3 3 chr21 16145087 16145390 -28762180 + AluSc SINE Alu 1 303 0 2464 158 2 34 chr21 16146084 16146532 -28761038 - MER57B LTR ERV1 0 434 1 403 338 28 28 chr21 16146661 16146803 -28760767 - L2 LINE L2 0 3313 3172 578 291 78 60 chr21 16147185 16147584 -28759986 - MLT1J2 LTR MaLR -44 406 1 584 246 95 81 chr21 16148529 16148627 -28758943 + L2 LINE L2 3026 3121 -192 237 83 0 0 chr21 16148627 16148663 -28758907 + (TA)n Simple_repeat Simple_repeat 2 37 0 584 246 95 81 chr21 16148663 16148848 -28758722 + L2 LINE L2 3121 3313 0 1864 141 3 11 chr21 16149196 16149480 -28758090 - AluJo SINE Alu -4 308 27 255 311 109 50 chr21 16149810 16149929 -28757641 - L2 LINE L2 0 3272 3147 1739 134 0 0 chr21 16150768 16151006 -28756564 + AluSx SINE Alu 6 243 -69 2571 37 0 3 chr21 16151288 16151586 -28755984 - AluY SINE Alu -14 297 1 227 420 10 0 chr21 16152177 16152277 -28755293 + L2 LINE L2 3116 3216 -56 763 152 21 14 chr21 16152846 16152991 -28754579 - LTR23 LTR ERV1 -1 436 291 474 91 13 0 chr21 16152990 16153067 -28754503 - LTR23 LTR ERV1 -356 81 4 * 288 360 29 32 chr21 16153964 16154278 -28753292 - LTR49-int LTR ERV1 -2088 2559 2247 2651 157 73 77 chr21 16154283 16155061 -28752509 - LTR49-int LTR ERV1 -1843 4488 3714 8745 147 65 78 chr21 16155102 16157277 -28750293 - LTR49-int LTR ERV1 -1937 3622 1558 263 49 24 0 chr21 16158248 16158289 -28749281 + (CAAAAA)n Simple_repeat Simple_repeat 2 43 0 1723 134 52 140 chr21 16158492 16158971 -28748599 - LTR23 LTR ERV1 0 437 1 1750 214 102 13 chr21 16160472 16161029 -28746541 - L1ME2 LINE L1 -110 6054 5448 881 249 24 41 chr21 16161024 16161301 -28746269 + L1M4 LINE L1 5030 5304 -857 * 2379 86 0 0 chr21 16161301 16161604 -28745966 + AluY SINE Alu 1 303 -8 881 249 24 41 chr21 16161604 16161718 -28745852 + L1M4 LINE L1 5304 5418 -743 795 204 39 0 chr21 16162363 16162544 -28745026 - MER20 DNA MER1_type -3 216 29 829 130 163 3 chr21 16162613 16162908 -28744662 - MSTA LTR MaLR 0 428 1 230 250 77 0 chr21 16164651 16164703 -28742867 - L2 LINE L2 -12 3260 3205 579 308 78 52 chr21 16164983 16165370 -28742200 + LTR67 LTR ERVL 7 403 -154 306 246 0 0 chr21 16165432 16165497 -28742073 + MER31B LTR ERV1 4 68 -398 654 244 107 70 chr21 16165509 16166134 -28741436 + MER67A LTR ERV1 1 543 0 * 1267 236 141 23 chr21 16166134 16166565 -28741005 - MLT1H LTR MaLR -26 523 42 1070 191 69 20 chr21 16166803 16167106 -28740464 - MER33 DNA MER1_type 0 324 7 2300 83 0 27 chr21 16167233 16167533 -28740037 - AluSc SINE Alu -17 292 1 726 317 164 6 chr21 16167563 16167904 -28739666 - LTR16C LTR ERVL 0 491 97 1837 163 29 23 chr21 16168038 16168388 -28739182 - MLT1A1 LTR MaLR 0 365 14 2146 141 3 3 chr21 16169495 16169807 -28737763 + AluJb SINE Alu 1 312 0 2908 289 112 23 chr21 16170935 16171118 -28736452 + L2 LINE L2 1116 1281 -2033 1949 150 13 0 chr21 16171118 16171425 -28736145 - AluSx SINE Alu -1 311 1 2908 289 112 23 chr21 16171425 16172401 -28735169 + L2 LINE L2 1281 2378 -936 681 150 8 8 chr21 16172407 16172534 -28735036 - L1MB8 LINE L1 -13 6165 6039 334 113 0 0 chr21 16172540 16172593 -28734977 - L1MB8 LINE L1 -235 5943 5891 3557 136 21 59 chr21 16172593 16173306 -28734264 + Ricksha DNA DNA 2557 3242 -4 1671 176 43 0 chr21 16173313 16173636 -28733934 - L1MB8 LINE L1 -281 5897 5561 1357 249 112 18 chr21 16173645 16174143 -28733427 + L2 LINE L2 2160 2704 -610 270 152 0 0 chr21 16174160 16174206 -28733364 + Ricksha DNA DNA 2801 2846 -8 430 278 168 10 chr21 16174280 16174489 -28733081 + LTR16C LTR ERVL 240 481 -10 440 320 47 85 chr21 16174686 16174956 -28732614 + LTR67 LTR ERVL 92 338 -219 1174 186 27 68 chr21 16174956 16174985 -28732585 - MER33 DNA MER1_type -2261 324 295 2189 124 0 6 chr21 16174985 16175300 -28732270 + AluSq SINE Alu 1 313 0 1174 186 27 68 chr21 16175300 16175608 -28731962 - MER33 DNA MER1_type -2290 295 1 440 320 47 85 chr21 16175608 16175809 -28731761 + LTR67 LTR ERVL 338 545 -12 301 261 70 42 chr21 16175904 16176046 -28731524 + MLT1I LTR MaLR 1 146 -263 1724 113 33 33 chr21 16176753 16177055 -28730515 + L1PA10 LINE L1 5867 6168 0 440 243 7 59 chr21 16177082 16177218 -28730352 - L1ME1 LINE L1 -10 6156 6028 231 36 0 0 chr21 16178057 16178085 -28729485 + (TTCA)n Simple_repeat Simple_repeat 1 28 0 919 306 117 20 chr21 16178085 16178252 -28729318 - L2 LINE L2 -16 3297 3148 3867 115 30 13 chr21 16178252 16178852 -28728718 - MER4B LTR ERV1 0 610 1 919 306 117 20 chr21 16178852 16179128 -28728442 - L2 LINE L2 -165 3148 2811 985 326 39 14 chr21 16179319 16179828 -28727742 + ERVL LTR ERVL 3600 4121 -1643 370 245 73 40 chr21 16180003 16180154 -28727416 + ERVL LTR ERVL 4408 4563 -1201 374 287 85 30 chr21 16180444 16180608 -28726962 + ERVL LTR ERVL 4894 5066 -698 369 0 0 0 chr21 16180930 16180971 -28726599 + (TG)n Simple_repeat Simple_repeat 2 42 0 35 0 0 0 chr21 16180971 16181006 -28726564 + AT_rich Low_complexity Low_complexity 1 35 0 1291 183 4 21 chr21 16181015 16181256 -28726314 - AluJb SINE Alu -75 237 1 416 228 104 62 chr21 16181565 16181758 -28725812 + L2 LINE L2 3113 3313 0 1652 185 0 23 chr21 16182104 16182407 -28725163 + AluJb SINE Alu 1 296 -16 2215 117 3 16 chr21 16182532 16182840 -28724730 + AluSx SINE Alu 1 304 -8 1942 156 0 13 chr21 16183404 16183711 -28723859 - AluJo SINE Alu -9 303 1 226 289 90 32 chr21 16183776 16183932 -28723638 - MLT1J LTR MaLR -5 506 342 247 355 50 8 chr21 16184245 16184366 -28723204 - L2 LINE L2 -11 3261 3136 1164 149 34 0 chr21 16184403 16184611 -28722959 - MER61A LTR ERV1 0 343 129 7149 99 11 2 chr21 16184856 16186766 -28720804 + L1PA8A LINE L1 4208 6129 -2 673 316 74 47 chr21 16186843 16187314 -28720256 - L2 LINE L2 -556 2758 2275 2693 214 3 23 chr21 16187333 16187898 -28719672 - MLT2B3 LTR ERVL 0 554 1 2122 180 58 2 chr21 16187898 16188360 -28719210 - ERVL-B3 LTR ERVL -7 5757 5270 1563 146 142 0 chr21 16188362 16188650 -28718920 - ERVL-B3 LTR ERVL -695 5069 4741 * 10917 168 28 9 chr21 16188645 16190856 -28716714 - ERVL-B1 LTR ERVL -2286 3478 1158 22 0 0 0 chr21 16190856 16190878 -28716692 + AT_rich Low_complexity Low_complexity 1 22 0 36 23 0 0 chr21 16191125 16191168 -28716402 + AT_rich Low_complexity Low_complexity 1 43 0 405 224 80 38 chr21 16191363 16191626 -28715944 - L1M4 LINE L1 -1575 4571 4298 1453 209 7 27 chr21 16191658 16191955 -28715615 - AluJo SINE Alu -21 291 1 4778 193 57 43 chr21 16191955 16193106 -28714464 - ERVL-B1 LTR ERVL -4594 1170 4 2331 216 18 18 chr21 16193114 16193629 -28713941 - MLT2B1 LTR ERVL -5 515 1 240 345 21 7 chr21 16193629 16193771 -28713799 - L2 LINE L2 -1061 2253 2110 419 384 53 49 chr21 16193839 16194290 -28713280 - L2 LINE L2 -11 3261 2809 443 262 86 45 chr21 16194600 16194821 -28712749 + MLT1K LTR MaLR 329 558 -30 396 260 59 14 chr21 16194897 16195116 -28712454 + L1ME3A LINE L1 4382 4610 -1536 26 30 0 0 chr21 16195131 16195164 -28712406 + AT_rich Low_complexity Low_complexity 1 33 0 192 152 0 0 chr21 16195164 16195197 -28712373 + (CA)n Simple_repeat Simple_repeat 2 34 0 1975 264 49 24 chr21 16195301 16196021 -28711549 + L1ME3A LINE L1 4749 5511 -651 1723 122 106 0 chr21 16196021 16196300 -28711270 + AluSg SINE Alu 1 306 0 1975 264 49 24 chr21 16196300 16196794 -28710776 + L1ME3A LINE L1 5511 5991 -171 383 284 15 8 chr21 16196799 16196933 -28710637 + L1ME3A LINE L1 6029 6163 -7 2468 74 0 13 chr21 16197204 16197515 -28710055 + AluSx SINE Alu 1 307 -5 1051 178 44 0 chr21 16198093 16198273 -28709297 + AluJb SINE Alu 124 311 -1 211 250 152 22 chr21 16198628 16198720 -28708850 + L2 LINE L2 3169 3272 0 198 150 0 0 chr21 16199215 16199255 -28708315 + (TG)n Simple_repeat Simple_repeat 2 41 0 1778 78 16 4 chr21 16199712 16199954 -28707616 + L1PA7 LINE L1 5907 6151 -3 2283 109 0 3 chr21 16200031 16200343 -28707227 - AluY SINE Alu 0 311 1 1998 143 10 0 chr21 16200513 16200813 -28706757 + AluJb SINE Alu 1 303 -9 378 247 10 0 chr21 16201521 16201618 -28705952 + MER103 DNA DNA 68 165 -1 2396 56 0 26 chr21 16202095 16202400 -28705170 - AluSg SINE Alu -13 297 1 520 333 16 16 chr21 16204606 16204849 -28702721 + MLT1J2 LTR MaLR 37 279 -171 737 214 51 39 chr21 16204868 16205141 -28702429 + Charlie4a DNA MER1_type 78 357 -1604 1700 169 43 7 chr21 16205141 16205420 -28702150 + AluJo SINE Alu 1 289 -23 737 214 51 39 chr21 16205420 16205478 -28702092 + Charlie4a DNA MER1_type 357 413 -95 523 249 73 12 chr21 16205699 16205864 -28701706 - MER105 DNA DNA -29 175 1 26 0 0 0 chr21 16206776 16206802 -28700768 + AT_rich Low_complexity Low_complexity 1 26 0 800 241 61 45 chr21 16207026 16207475 -28700095 + MLT2B1 LTR ERVL 4 464 0 1836 116 84 0 chr21 16208944 16209219 -28698351 - AluSx SINE Alu -14 298 1 621 51 0 0 chr21 16209572 16209651 -28697919 + MADE1 DNA Mariner 1 79 -1 586 234 145 45 chr21 16210809 16211146 -28696424 + MLT1J2 LTR MaLR 1 371 -79 578 251 181 51 chr21 16211345 16211852 -28695718 - L1MC4 LINE L1 0 8042 7470 13420 197 45 10 chr21 16212395 16213182 -28694388 - L1PB1 LINE L1 -2 6865 6107 2303 104 0 0 chr21 16213182 16213481 -28694089 - AluY SINE Alu -12 299 1 13420 197 45 10 chr21 16213481 16217534 -28690036 - L1PB1 LINE L1 -760 6107 1577 2716 85 95 5 chr21 16217534 16217945 -28689625 - LTR7 LTR ERV1 -2 448 1 13420 197 45 10 chr21 16217945 16219575 -28687995 - L1PB1 LINE L1 -5290 1577 6 2594 42 0 0 chr21 16220023 16220334 -28687236 - AluY SINE Alu 0 311 1 1901 179 10 37 chr21 16220339 16220742 -28686828 + MLT2C1 LTR ERVL 6 397 0 1339 243 34 29 chr21 16221712 16221796 -28685774 - MER63B DNA MER1_type -652 410 328 1812 148 3 30 chr21 16221796 16222093 -28685477 + AluJo SINE Alu 1 289 -23 1339 243 34 29 chr21 16222093 16222416 -28685154 - MER63B DNA MER1_type -734 328 1 289 248 108 99 chr21 16222506 16222549 -28685021 - L2 LINE L2 0 3313 3272 1749 246 20 13 chr21 16222549 16223008 -28684562 + LTR40b LTR ERVL 1 462 0 289 248 108 99 chr21 16223008 16223278 -28684292 - L2 LINE L2 -41 3272 2997 844 123 0 8 chr21 16223326 16223456 -28684114 + FLAM_C SINE Alu 2 130 -3 1846 93 6 121 chr21 16224262 16224594 -28682976 + AluSx SINE Alu 1 294 -8 245 260 41 0 chr21 16224952 16225018 -28682552 - MIR SINE MIR -67 141 69 2329 83 0 0 chr21 16225489 16225790 -28681780 + AluY SINE Alu 1 301 -10 13762 22 7 0 chr21 16225951 16228339 -28679231 - L1PA3 LINE L1 -2 6153 3756 29 70 0 0 chr21 16228391 16228448 -28679122 + AT_rich Low_complexity Low_complexity 1 57 0 355 118 97 201 chr21 16228883 16228944 -28678626 - MER63 DNA MER1_type -81 755 689 2414 50 0 0 chr21 16228944 16229226 -28678344 + AluY SINE Alu 30 311 0 355 118 97 201 chr21 16229226 16229308 -28678262 - MER63 DNA MER1_type -147 689 1 738 203 11 103 chr21 16229692 16229802 -28677768 + MER96B DNA MER1_type? 2 121 -296 1377 136 7 61 chr21 16229802 16229992 -28677578 - L1PB2 LINE L1 -2 6149 5977 2563 46 0 10 chr21 16229992 16230299 -28677271 - AluY SINE Alu -7 304 1 1377 136 7 61 chr21 16230299 16230387 -28677183 - L1PB2 LINE L1 -174 5977 5886 738 203 11 103 chr21 16230387 16230547 -28677023 + MER96B DNA MER1_type? 121 247 -170 411 320 140 4 chr21 16231191 16231419 -28676151 - MIR SINE MIR 0 262 4 1062 252 45 0 chr21 16231972 16232238 -28675332 - MLT1A1 LTR MaLR -6 359 82 1116 216 29 22 chr21 16232242 16232515 -28675055 + MER21B LTR ERV1 156 430 -433 744 315 66 53 chr21 16234158 16234685 -28672885 - L1M4 LINE L1 -1191 4955 4422 577 228 0 43 chr21 16234689 16234814 -28672756 - LTR33 LTR ERVL 0 521 403 2645 193 10 25 chr21 16234814 16235337 -28672233 + MLT2B2 LTR ERVL 1 515 0 577 228 0 43 chr21 16235337 16235373 -28672197 - LTR33 LTR ERVL -118 403 367 698 278 57 5 chr21 16235475 16235669 -28671901 - LTR33 LTR ERVL -317 204 1 255 61 0 0 chr21 16235732 16235765 -28671805 + (TG)n Simple_repeat Simple_repeat 2 34 0 716 260 20 15 chr21 16236076 16236162 -28671408 + MIR SINE MIR 66 150 -112 1780 147 87 35 chr21 16236162 16236508 -28671062 - THE1B LTR MaLR 0 364 1 11719 97 8 4 chr21 16236508 16238083 -28669487 - THE1B-int LTR MaLR 0 1580 1 2427 127 5 19 chr21 16238083 16238452 -28669118 - THE1B LTR MaLR 0 364 1 716 260 20 15 chr21 16238452 16238559 -28669011 + MIR SINE MIR 149 262 0 283 161 65 0 chr21 16238828 16238886 -28668684 + MLT1J LTR MaLR 106 167 -344 1209 217 15 51 chr21 16238886 16239222 -28668348 - MLT2D LTR ERVL 0 414 91 626 322 47 16 chr21 16239253 16239570 -28668000 + MLT1J2 LTR MaLR 121 447 -3 312 338 0 22 chr21 16239570 16239706 -28667864 - L2 LINE L2 -617 2697 2565 1539 136 11 79 chr21 16240618 16240979 -28666591 - MER4A LTR ERV1 0 664 270 616 102 10 10 chr21 16240993 16241091 -28666479 - MER4A LTR ERV1 -566 98 1 253 252 9 96 chr21 16241172 16241287 -28666283 - MIR SINE MIR -77 185 81 2261 104 0 3 chr21 16241321 16241619 -28665951 - AluSg SINE Alu -13 297 1 205 214 0 0 chr21 16243376 16243418 -28664152 + L2 LINE L2 3230 3271 -1 2084 126 32 29 chr21 16244258 16244632 -28662938 - THE1C LTR MaLR 0 375 1 294 73 0 0 chr21 16244836 16244877 -28662693 + (CA)n Simple_repeat Simple_repeat 2 42 0 309 277 0 43 chr21 16244888 16244982 -28662588 - L1MC4 LINE L1 -1339 6703 6614 345 207 21 11 chr21 16244986 16245080 -28662490 + L1MC4 LINE L1 1995 6981 -1341 212 175 0 0 chr21 16245667 16245707 -28661863 + L2 LINE L2 3273 3312 -1 204 363 89 14 chr21 16246263 16246409 -28661161 - L2 LINE L2 -222 3050 2894 1374 264 41 14 chr21 16247241 16247657 -28659913 + L1M2 LINE L1 10 436 -6413 352 263 81 55 chr21 16247738 16247931 -28659639 + L1M2 LINE L1 412 887 -5962 256 254 0 0 chr21 16248122 16248185 -28659385 + L1PBb LINE L1 421 483 -6367 603 246 68 100 chr21 16248371 16248651 -28658919 + L1PBb LINE L1 797 1067 -5783 341 323 21 16 chr21 16248841 16249033 -28658537 + L1PBb LINE L1 1017 1209 -5641 1930 232 111 2 chr21 16249055 16249612 -28657958 + L1PBb LINE L1 1423 2040 -4809 4903 161 15 18 chr21 16249617 16250577 -28656993 + L1PB4 LINE L1 4946 5908 -248 7828 72 3 2 chr21 16250577 16251545 -28656025 - LTR5 LTR ERVK 0 969 1 4903 161 15 18 chr21 16251545 16251617 -28655953 + L1PB4 LINE L1 5908 5979 -177 2245 109 7 7 chr21 16251617 16251920 -28655650 + AluSc SINE Alu 1 303 -6 4903 161 15 18 chr21 16251920 16252100 -28655470 + L1PB4 LINE L1 5979 6156 0 746 289 8 36 chr21 16253028 16253281 -28654289 - MIR SINE MIR -8 254 9 299 321 87 60 chr21 16254569 16254652 -28652918 - L2 LINE L2 -1738 1576 1497 2243 98 0 26 chr21 16254652 16254959 -28652611 + AluSg SINE Alu 1 299 -11 299 321 87 60 chr21 16254959 16255289 -28652281 - L2 LINE L2 -1817 1497 1152 265 320 39 29 chr21 16255679 16255782 -28651788 - L2 LINE L2 0 3313 3210 192 97 0 0 chr21 16256242 16256273 -28651297 + (TA)n Simple_repeat Simple_repeat 1 31 0 2498 57 0 10 chr21 16256322 16256636 -28650934 - AluY SINE Alu 0 311 1 2287 167 12 2 chr21 16256930 16257350 -28650220 - L1MB1 LINE L1 -1 6167 5744 32 57 0 0 chr21 16257371 16257424 -28650146 + AT_rich Low_complexity Low_complexity 1 53 0 783 254 95 71 chr21 16257773 16257817 -28649753 + L1ME3A LINE L1 5541 5582 -588 640 262 23 0 chr21 16257817 16257989 -28649581 + MER45A DNA AcHobo 1 176 -2 783 254 95 71 chr21 16257989 16258522 -28649048 + L1ME3A LINE L1 5582 6132 -38 207 0 0 0 chr21 16259145 16259168 -28648402 + (T)n Simple_repeat Simple_repeat 1 23 0 24 32 0 0 chr21 16259486 16259517 -28648053 + AT_rich Low_complexity Low_complexity 1 31 0 1923 168 14 24 chr21 16259568 16259937 -28647633 - MLT1A1 LTR MaLR 0 365 1 2427 131 28 0 chr21 16260081 16260433 -28647137 + THE1B LTR MaLR 1 362 -2 881 264 14 71 chr21 16260531 16260627 -28646943 + MLT2C1 LTR ERVL 1 101 -296 2026 151 140 8 chr21 16260627 16261005 -28646565 + MSTA LTR MaLR 1 428 0 881 264 14 71 chr21 16261005 16261329 -28646241 + MLT2C1 LTR ERVL 101 397 0 2194 291 43 18 chr21 16261375 16262115 -28645455 + L1M3b LINE L1 1 759 -5522 2856 272 60 27 chr21 16262209 16262787 -28644783 + L1M3b LINE L1 617 1174 -5177 2304 77 7 7 chr21 16262787 16263084 -28644486 + AluY SINE Alu 1 297 -14 2856 272 60 27 chr21 16263084 16263994 -28643576 + L1M3b LINE L1 1174 1950 -4401 2165 58 0 11 chr21 16263994 16264270 -28643300 + AluY SINE Alu 1 273 -38 2856 272 60 27 chr21 16264270 16264358 -28643212 + L1M3b LINE L1 1950 2034 -4317 1674 194 112 3 chr21 16264362 16264889 -28642681 - L1 LINE L1 -3594 3971 3385 1297 219 9 0 chr21 16264938 16265253 -28642317 + L1M3b LINE L1 2910 3227 -3123 3344 178 44 1 chr21 16265254 16265391 -28642179 + L1PB4 LINE L1 5156 5286 -870 282 29 0 0 chr21 16265391 16265426 -28642144 + (CA)n Simple_repeat Simple_repeat 2 36 0 3344 178 44 1 chr21 16265426 16266165 -28641405 + L1PB4 LINE L1 5286 6154 -2 2739 172 68 3 chr21 16266181 16266814 -28640756 + L1M3b LINE L1 3219 3892 -2458 204 213 0 0 chr21 16267825 16267872 -28639698 + A-rich Low_complexity Low_complexity 1 47 0 347 0 23 0 chr21 16268351 16268394 -28639176 + (CA)n Simple_repeat Simple_repeat 2 45 0 228 308 0 0 chr21 16268878 16268956 -28638614 + (TA)n Simple_repeat Simple_repeat 2 79 0 288 0 0 0 chr21 16268966 16268998 -28638572 + (TG)n Simple_repeat Simple_repeat 2 33 0 1003 309 73 24 chr21 16269482 16269810 -28637760 + L1MEc LINE L1 995 1305 -5091 1417 176 151 7 chr21 16269810 16270082 -28637488 + AluJo SINE Alu 1 311 -1 1003 309 73 24 chr21 16270082 16270602 -28636968 + L1MEc LINE L1 1305 1905 -4491 1882 127 66 33 chr21 16270602 16270964 -28636606 - THE1C LTR MaLR -1 374 1 1003 309 73 24 chr21 16270964 16271136 -28636434 + L1MEc LINE L1 1905 2067 -4329 978 215 0 0 chr21 16271178 16271350 -28636220 + FRAM SINE Alu 1 171 -5 706 241 62 71 chr21 16271459 16271590 -28635980 + L1MEc LINE L1 2179 2310 -3905 2196 109 3 0 chr21 16271590 16271875 -28635695 + AluSg SINE Alu 3 288 -22 706 241 62 71 chr21 16271875 16272192 -28635378 + L1MEc LINE L1 2310 2623 -3592 2331 171 16 63 chr21 16272193 16272697 -28634873 + MLT2B1 LTR ERVL 1 480 -40 79 44 0 0 chr21 16272697 16272811 -28634759 + AT_rich Low_complexity Low_complexity 1 114 0 842 140 0 42 chr21 16272811 16272954 -28634616 - MLT1A1 LTR MaLR -2 363 227 2348 165 31 10 chr21 16273932 16274345 -28633225 + MSTB LTR MaLR 1 422 -4 1654 164 11 11 chr21 16274375 16274656 -28632914 - MLT1A1 LTR MaLR -2 363 83 1116 154 27 0 chr21 16274702 16274890 -28632680 + MLT2B1 LTR ERVL 1 193 -327 384 102 34 0 chr21 16274895 16274954 -28632616 - MLT1A1 LTR MaLR -273 92 32 267 364 160 29 chr21 16274970 16275352 -28632218 + L2 LINE L2 2456 2887 -427 182 0 64 85 chr21 16275567 16275614 -28631956 + (TAAAAA)n Simple_repeat Simple_repeat 6 51 0 538 282 85 64 chr21 16275859 16276189 -28631381 - L3b LINE CR1 -141 1442 1106 21 0 0 0 chr21 16278145 16278166 -28629404 + AT_rich Low_complexity Low_complexity 1 21 0 268 317 115 43 chr21 16278344 16278789 -28628781 + L2 LINE L2 1932 2408 -906 323 281 67 0 chr21 16278899 16278988 -28628582 + L2 LINE L2 3173 3267 -5 2383 68 0 3 chr21 16280640 16280955 -28626615 + AluY SINE Alu 1 314 0 2313 144 11 3 chr21 16281195 16281556 -28626014 - THE1B LTR MaLR 0 364 1 220 273 0 0 chr21 16282182 16282237 -28625333 + (CA)n Simple_repeat Simple_repeat 1 55 0 22 35 0 0 chr21 16282898 16282927 -28624643 + AT_rich Low_complexity Low_complexity 1 29 0 243 88 0 0 chr21 16283300 16283334 -28624236 + (TCC)n Simple_repeat Simple_repeat 3 36 0 222 362 43 21 chr21 16283499 16283593 -28623977 + L2 LINE L2 3133 3228 -44 22 0 0 0 chr21 16283767 16283789 -28623781 + AT_rich Low_complexity Low_complexity 1 22 0 26 30 0 0 chr21 16283884 16283917 -28623653 + AT_rich Low_complexity Low_complexity 1 33 0 2063 120 10 0 chr21 16284750 16285042 -28622528 - AluSx SINE Alu -17 295 1 182 298 0 0 chr21 16285667 16285714 -28621856 - L2 LINE L2 -8 3305 3259 211 361 0 0 chr21 16286509 16286570 -28621000 + L2 LINE L2 3246 3306 -7 940 92 0 0 chr21 16288459 16288590 -28618980 - L1PB1 LINE L1 0 6151 6021 6993 58 5 0 chr21 16288598 16289491 -28618079 - L1PA7 LINE L1 -3 6151 5255 * 12618 85 12 5 chr21 16289489 16291248 -28616322 + L1PA7 LINE L1 3467 5239 -907 2332 80 6 16 chr21 16291264 16291576 -28615994 - AluY SINE Alu 0 311 3 1953 139 4 0 chr21 16292121 16292428 -28615142 - AluSg SINE Alu 0 308 1 246 119 75 0 chr21 16292778 16292845 -28614725 + (TA)n Simple_repeat Simple_repeat 1 72 0 716 115 0 0 chr21 16292904 16293008 -28614562 + AluSg1 SINE Alu 1 104 -205 1869 121 99 10 chr21 16293008 16293321 -28614249 + L1PA15 LINE L1 5825 6165 0 284 340 38 69 chr21 16293329 16293618 -28613952 + L2 LINE L2 2783 3061 -252 1307 158 10 0 chr21 16293948 16294157 -28613413 + AluSg1 SINE Alu 100 310 0 22 70 0 0 chr21 16294557 16294600 -28612970 + AT_rich Low_complexity Low_complexity 1 43 0 343 295 41 8 chr21 16294944 16295066 -28612504 - MIR SINE MIR -40 222 97 2197 83 20 20 chr21 16295217 16295518 -28612052 - AluSc SINE Alu -8 301 1 1941 92 0 11 chr21 16295539 16295799 -28611771 + AluSc SINE Alu 45 301 -8 2408 217 32 40 chr21 16295848 16296000 -28611570 - MLT1E2 LTR MaLR 0 626 474 2242 98 0 0 chr21 16296000 16296295 -28611275 + AluSg SINE Alu 1 295 -15 2468 71 3 0 chr21 16296295 16296605 -28610965 + AluY SINE Alu 1 311 0 2408 217 32 40 chr21 16296605 16297082 -28610488 - MLT1E2 LTR MaLR -150 476 1 297 263 273 50 chr21 16298743 16298941 -28608629 + MIR SINE MIR 20 261 -1 22 0 0 0 chr21 16299250 16299272 -28608298 + AT_rich Low_complexity Low_complexity 1 22 0 2025 99 0 65 chr21 16300552 16300875 -28606695 - AluSx SINE Alu -2 310 9 349 311 77 37 chr21 16300964 16301587 -28605983 - L1ME4a LINE L1 -181 5940 5295 3207 182 87 35 chr21 16301597 16302332 -28605238 - L1MA10 LINE L1 -9 6325 5553 398 291 30 20 chr21 16302895 16303098 -28604472 - L1ME4a LINE L1 -1486 4660 4456 1655 187 114 3 chr21 16303644 16303960 -28603610 - MLT1A1 LTR MaLR -11 354 4 200 213 0 0 chr21 16303988 16304035 -28603535 + T-rich Low_complexity Low_complexity 1 47 0 4814 73 3 0 chr21 16304035 16304665 -28602905 - L1PA7 LINE L1 -11 6143 5512 241 210 89 73 chr21 16304938 16305062 -28602508 + L3 LINE CR1 825 950 -627 5249 22 0 0 chr21 16306256 16306857 -28600713 - L1PA3 LINE L1 0 6155 5555 180 333 117 36 chr21 16307133 16307244 -28600326 + MIR3 SINE MIR 84 203 -5 35 24 0 0 chr21 16308028 16308070 -28599500 + AT_rich Low_complexity Low_complexity 1 42 0 243 222 12 37 chr21 16308072 16308153 -28599417 + (TCTCTG)n Simple_repeat Simple_repeat 4 82 0 5842 158 22 25 chr21 16308536 16310575 -28596995 - L1MA4 LINE L1 0 7362 5309 225 0 0 0 chr21 16310577 16310602 -28596968 + (T)n Simple_repeat Simple_repeat 1 25 0 1351 114 10 0 chr21 16310618 16310811 -28596759 - AluSp SINE Alu -118 195 1 1342 164 36 29 chr21 16310812 16311068 -28596502 - L1MA4 LINE L1 -1904 5304 5044 4395 115 3 3 chr21 16311068 16311727 -28595843 - L1PA13 LINE L1 0 6163 5505 1314 207 17 0 chr21 16311727 16312075 -28595495 - L1MA4 LINE L1 -2754 4454 4101 * 3438 261 211 9 chr21 16312074 16313452 -28594118 - L1MA4 LINE L1 -5551 1658 2 197 235 139 70 chr21 16314226 16314341 -28593229 + L2 LINE L2 3127 3249 -23 340 335 68 31 chr21 16314544 16314705 -28592865 + L3 LINE CR1 1354 1520 -57 2505 104 0 30 chr21 16315382 16315746 -28591824 - THE1A LTR MaLR 0 355 3 11636 96 5 0 chr21 16315748 16317320 -28590250 - THE1A-int LTR MaLR 0 1580 1 2508 110 3 3 chr21 16317320 16317675 -28589895 - THE1A LTR MaLR 0 355 1 207 0 0 0 chr21 16319633 16319656 -28587914 + (T)n Simple_repeat Simple_repeat 1 23 0 22 56 0 0 chr21 16320297 16320333 -28587237 + AT_rich Low_complexity Low_complexity 1 36 0 2561 30 7 3 chr21 16320701 16321006 -28586564 + AluY SINE Alu 1 306 -5 63 26 0 0 chr21 16321226 16321303 -28586267 + AT_rich Low_complexity Low_complexity 1 77 0 288 238 25 25 chr21 16321303 16321383 -28586187 - MIR SINE MIR 0 262 183 1958 170 128 0 chr21 16321563 16321939 -28585631 - LTR64 LTR ERVK -29 529 106 213 339 74 25 chr21 16322563 16322684 -28584886 + MIR SINE MIR 70 196 -66 269 235 165 70 chr21 16322821 16322936 -28584634 - MIR SINE MIR -24 238 113 887 255 20 24 chr21 16322980 16323227 -28584343 + MIR SINE MIR 6 251 -11 1186 93 116 28 chr21 16323632 16323737 -28583833 + L1PA10 LINE L1 5934 6028 -140 2094 135 8 42 chr21 16323737 16324114 -28583456 + THE1B LTR MaLR 1 364 0 1186 93 116 28 chr21 16324114 16324224 -28583346 + L1PA10 LINE L1 6028 6168 0 225 325 83 8 chr21 16324533 16324653 -28582917 - L3b LINE CR1 -78 1505 1377 2399 158 62 58 chr21 16326006 16326168 -28581402 - L1MA10 LINE L1 0 6334 6174 210 37 0 0 chr21 16326168 16326195 -28581375 + (TG)n Simple_repeat Simple_repeat 2 28 0 2399 158 62 58 chr21 16326195 16326565 -28581005 - L1MA10 LINE L1 -160 6174 5800 25 51 0 0 chr21 16327323 16327362 -28580208 + AT_rich Low_complexity Low_complexity 1 39 0 2082 70 0 0 chr21 16327504 16327760 -28579810 + AluY SINE Alu 39 294 -17 1701 35 8 97 chr21 16327928 16328185 -28579385 + AluY SINE Alu 76 309 -2 300 170 75 0 chr21 16329805 16329858 -28577712 - L2 LINE L2 -5 3308 3252 228 354 16 39 chr21 16330399 16330526 -28577044 - MIR3 SINE MIR -71 137 14 30 45 0 0 chr21 16330933 16330977 -28576593 + AT_rich Low_complexity Low_complexity 1 44 0 789 231 18 0 chr21 16330985 16331154 -28576416 + LTR16C LTR ERVL 320 491 0 2410 87 0 0 chr21 16331495 16331794 -28575776 - AluSx SINE Alu -13 299 1 1871 116 3 14 chr21 16332063 16332348 -28575222 + L1PA16 LINE L1 5719 6000 -166 2156 196 49 0 chr21 16332348 16332756 -28574814 + MSTA LTR MaLR 1 428 0 1308 158 18 0 chr21 16332756 16332978 -28574592 + MSTA-int LTR MaLR 1 226 -1425 2140 136 125 10 chr21 16332978 16333361 -28574209 + MSTA LTR MaLR 1 427 -1 8183 184 18 52 chr21 16333362 16335070 -28572500 + MSTA-int LTR MaLR 1 1650 -1 1120 132 162 17 chr21 16335071 16335306 -28572264 + MSTA LTR MaLR 1 269 -159 4676 190 16 11 chr21 16335306 16336163 -28571407 + MSTA-int LTR MaLR 790 1651 0 2361 182 44 0 chr21 16336165 16336572 -28570998 + MSTA LTR MaLR 3 427 -1 341 102 0 0 chr21 16336604 16336653 -28570917 - MADE1 DNA Mariner -30 50 2 347 363 73 5 chr21 16336829 16337033 -28570537 + MIR SINE MIR 44 261 -1 1628 128 28 7 chr21 16337196 16337486 -28570084 + L1MA3 LINE L1 6010 6305 0 21 57 0 0 chr21 16337511 16337546 -28570024 + AT_rich Low_complexity Low_complexity 1 35 0 547 308 97 28 chr21 16337567 16337856 -28569714 - MLT1I LTR MaLR -28 381 73 608 198 85 55 chr21 16338520 16338682 -28568888 + MLT1B LTR MaLR 1 146 -228 740 145 8 8 chr21 16338682 16338799 -28568771 + FLAM_C SINE Alu 1 117 -16 608 198 85 55 chr21 16338799 16338843 -28568727 + MLT1B LTR MaLR 146 187 -187 534 314 84 4 chr21 16338944 16339170 -28568400 - L2 LINE L2 -1061 2253 2010 709 194 0 87 chr21 16339732 16339928 -28567642 + MLT1A2 LTR MaLR 1 179 -195 1113 282 127 22 chr21 16339941 16340398 -28567172 - MLT1D LTR MaLR 0 505 1 24 32 0 0 chr21 16343443 16343474 -28564096 + AT_rich Low_complexity Low_complexity 1 31 0 2055 153 8 33 chr21 16343490 16343888 -28563682 - MLT1B LTR MaLR -2 388 1 391 271 90 15 chr21 16343889 16344022 -28563548 + L2 LINE L2 3171 3313 0 1558 204 14 3 chr21 16344855 16345140 -28562430 + AluJo SINE Alu 1 288 -24 1630 211 14 27 chr21 16345537 16345907 -28561663 + MLT1A1 LTR MaLR 1 365 0 272 26 0 26 chr21 16346069 16346107 -28561463 + (TCCCC)n Simple_repeat Simple_repeat 1 37 0 501 62 0 0 chr21 16346128 16346193 -28561377 + (TTCC)n Simple_repeat Simple_repeat 4 68 0 371 259 37 74 chr21 16346221 16346275 -28561295 + L2 LINE L2 3176 3230 -83 2368 97 0 6 chr21 16346275 16346586 -28560984 + AluSq SINE Alu 1 309 -4 371 259 37 74 chr21 16346586 16346666 -28560904 + L2 LINE L2 3230 3305 -8 1153 259 86 70 chr21 16347878 16348432 -28559138 + MLT1F1 LTR MaLR 1 564 -3 281 225 0 14 chr21 16348434 16348505 -28559065 + LTR67 LTR ERVL 474 543 -14 205 208 139 56 chr21 16348752 16348824 -28558746 + L3 LINE CR1 373 450 -1127 1372 157 35 7 chr21 16349927 16350213 -28557357 + L1MA8 LINE L1 5993 6286 -5 718 289 106 25 chr21 16350280 16350564 -28557006 + ERVL LTR ERVL 2291 2597 -3167 681 317 163 12 chr21 16350734 16351278 -28556292 - L2 LINE L2 0 3313 2690 4475 265 62 8 chr21 16352974 16354524 -28553046 - L1MEc LINE L1 -4577 1819 108 302 289 55 0 chr21 16355756 16355884 -28551686 - L1MEc LINE L1 -4856 1540 1406 251 337 66 33 chr21 16355991 16356172 -28551398 + HAL1b LINE L1 406 592 -756 27 49 0 0 chr21 16357642 16357683 -28549887 + AT_rich Low_complexity Low_complexity 1 41 0 393 310 54 16 chr21 16359089 16359273 -28548297 + MIR SINE MIR 18 208 -54 22 0 0 0 chr21 16359818 16359840 -28547730 + AT_rich Low_complexity Low_complexity 1 22 0 28 0 0 0 chr21 16360027 16360055 -28547515 + AT_rich Low_complexity Low_complexity 1 28 0 536 335 5 11 chr21 16360282 16360467 -28547103 - MIR3 SINE MIR -5 203 20 4471 196 70 22 chr21 16361057 16361577 -28545993 + MER45B DNA AcHobo 1 495 -1086 1956 106 80 40 chr21 16361577 16361927 -28545643 - THE1B LTR MaLR 0 364 1 4471 196 70 22 chr21 16361927 16362399 -28545171 + MER45B DNA AcHobo 495 1040 0 605 354 78 16 chr21 16362715 16363085 -28544485 - L2 LINE L2 0 3313 2921 1058 244 82 53 chr21 16363094 16363498 -28544072 + MLT1C LTR MaLR 1 421 -46 1368 180 32 122 chr21 16363498 16363899 -28543671 + MLT1A1 LTR MaLR 1 365 0 1058 244 82 53 chr21 16363899 16363948 -28543622 + MLT1C LTR MaLR 421 467 0 558 333 118 52 chr21 16363948 16364531 -28543039 - L2 LINE L2 -398 2916 2295 23 0 0 0 chr21 16365275 16365298 -28542272 + AT_rich Low_complexity Low_complexity 1 23 0 2162 155 18 25 chr21 16367355 16367748 -28539822 - MLT1B LTR MaLR 0 390 1 351 303 85 38 chr21 16367773 16367984 -28539586 - L2 LINE L2 -18 3295 3075 679 332 86 49 chr21 16368066 16368719 -28538851 - L2 LINE L2 -400 2914 2238 3516 39 0 2 chr21 16368789 16369220 -28538350 - L1PA7 LINE L1 0 6154 5725 21 0 0 0 chr21 16369264 16369285 -28538285 + AT_rich Low_complexity Low_complexity 1 21 0 412 289 77 26 chr21 16370136 16370292 -28537278 - MIR3 SINE MIR -30 178 15 325 174 20 60 chr21 16371715 16371864 -28535706 + (TA)n Simple_repeat Simple_repeat 1 143 0 270 257 0 0 chr21 16371995 16372065 -28535505 + (TA)n Simple_repeat Simple_repeat 1 70 0 1495 164 46 7 chr21 16372261 16372542 -28535028 + L1MA7 LINE L1 5776 6067 -224 736 145 72 20 chr21 16372543 16372695 -28534875 + L1MA7 LINE L1 6127 6286 -5 225 403 22 17 chr21 16372762 16372943 -28534627 + L2 LINE L2 870 1051 -2263 310 239 174 52 chr21 16373109 16373264 -28534306 - L1ME3A LINE L1 -66 6104 5931 308 292 36 36 chr21 16373777 16373914 -28533656 - HAL1 LINE L1 -600 1907 1771 646 258 11 0 chr21 16373935 16374121 -28533449 - HAL1 LINE L1 -810 1697 1510 40 79 0 0 chr21 16374160 16374249 -28533321 + AT_rich Low_complexity Low_complexity 1 89 0 821 254 69 40 chr21 16374249 16375074 -28532496 - HAL1 LINE L1 -1050 1457 557 1713 153 28 22 chr21 16375197 16375517 -28532053 - L1MC1 LINE L1 -8 6325 6004 1635 158 7 3 chr21 16375702 16376005 -28531565 - L1MA5 LINE L1 -10 6290 5987 3251 96 38 8 chr21 16376005 16376505 -28531065 + L1MA5 LINE L1 5435 5949 -351 295 343 144 24 chr21 16376511 16376852 -28530718 + L2 LINE L2 1875 2256 -1058 1257 235 35 61 chr21 16376852 16377247 -28530323 + MLT1B LTR MaLR 1 385 -5 1364 86 109 5 chr21 16377359 16377580 -28529990 - L1PA11 LINE L1 0 6174 5931 542 121 0 0 chr21 16377582 16377665 -28529905 + L1PA11 LINE L1 5867 5949 -219 474 349 53 19 chr21 16377706 16378024 -28529546 + L2 LINE L2 2377 2705 -609 1905 144 18 0 chr21 16378033 16378337 -28529233 + AluJb SINE Alu 1 309 0 1287 161 0 69 chr21 16380126 16380348 -28527222 - AluSx SINE Alu -70 242 39 2222 103 0 0 chr21 16380348 16380638 -28526932 + AluSx SINE Alu 5 294 -18 1287 161 0 69 chr21 16380638 16380675 -28526895 - AluSx SINE Alu -273 39 1 204 206 0 0 chr21 16380736 16380770 -28526800 + polypurine Low_complexity Low_complexity 2 35 0 212 250 0 45 chr21 16381698 16381786 -28525784 + CT-rich Low_complexity Low_complexity 1 84 0 316 258 62 39 chr21 16382132 16382260 -28525310 + L2 LINE L2 3182 3312 -1 919 257 18 37 chr21 16382337 16382609 -28524961 + MLT2B1 LTR ERVL 198 464 -56 253 137 78 0 chr21 16382669 16382720 -28524850 + MLT2B1 LTR ERVL 461 515 0 259 314 23 0 chr21 16383153 16383239 -28524331 + L2 LINE L2 3185 3272 0 2050 147 10 70 chr21 16384500 16384915 -28522655 + MLT1B LTR MaLR 1 390 0 2174 182 34 43 chr21 16385075 16385543 -28522027 + MLT1C LTR MaLR 3 466 -1 23 0 0 0 chr21 16385922 16385945 -28521625 + AT_rich Low_complexity Low_complexity 1 23 0 2298 108 0 0 chr21 16386050 16386357 -28521213 - AluSq SINE Alu -6 307 1 790 250 145 4 chr21 16386687 16386935 -28520635 - LTR40b LTR ERVL -2 460 178 209 83 28 0 chr21 16387382 16387418 -28520152 + (TA)n Simple_repeat Simple_repeat 1 37 0 918 139 0 0 chr21 16387636 16387765 -28519805 - AluJo SINE Alu -178 134 6 206 200 0 0 chr21 16387777 16387812 -28519758 + polypyrimidine Low_complexity Low_complexity 2 36 0 518 108 12 0 chr21 16387812 16387895 -28519675 + (TTCCC)n Simple_repeat Simple_repeat 1 84 0 232 204 19 0 chr21 16387901 16387955 -28519615 + T-rich Low_complexity Low_complexity 5 59 0 798 83 58 0 chr21 16387974 16388094 -28519476 + L1PB1 LINE L1 6022 6148 -3 789 221 136 0 chr21 16388366 16388579 -28518991 - LTR40a LTR ERVL -275 244 3 2102 131 3 0 chr21 16389007 16389305 -28518265 - AluSg SINE Alu -11 299 1 201 60 0 90 chr21 16389563 16389630 -28517940 + (CATTT)n Simple_repeat Simple_repeat 1 61 0 29 60 0 0 chr21 16391746 16391796 -28515774 + AT_rich Low_complexity Low_complexity 1 50 0 481 283 26 7 chr21 16393307 16393459 -28514111 + MIR SINE MIR 30 184 -78 1693 246 3 6 chr21 16393603 16393969 -28513601 + MLT1A1 LTR MaLR 1 365 0 2569 186 96 14 chr21 16393969 16394614 -28512956 + MLT1A1-int LTR MaLR 1 770 -965 2218 206 18 125 chr21 16394613 16395343 -28512227 + MLT1A1-int LTR MaLR 1083 1734 -1 * 1971 167 28 31 chr21 16395345 16395705 -28511865 + MLT1A1 LTR MaLR 2 360 -5 455 270 40 36 chr21 16395840 16395981 -28511589 + MIR SINE MIR 2 145 -63 2611 93 3 35 chr21 16395981 16396357 -28511213 - THE1B LTR MaLR 0 364 1 455 270 40 36 chr21 16396357 16396371 -28511199 + MIR SINE MIR 145 157 -51 572 277 75 0 chr21 16396638 16396826 -28510744 - MIR SINE MIR -56 206 5 1855 170 27 16 chr21 16396839 16397215 -28510355 - L1PB4 LINE L1 0 7218 6839 188 101 50 59 chr21 16397221 16397340 -28510230 + (TA)n Simple_repeat Simple_repeat 1 118 0 253 165 46 46 chr21 16397355 16397464 -28510106 + (TA)n Simple_repeat Simple_repeat 1 109 0 717 177 4 9 chr21 16397468 16397608 -28509962 - L1P2 LINE L1 -348 5806 5664 303 247 0 0 chr21 16397589 16397662 -28509908 + L1P4 LINE L1 5664 5736 -432 * 7062 195 10 16 chr21 16397706 16399259 -28508311 - L1PB4 LINE L1 -512 6706 5167 2315 109 0 0 chr21 16399259 16399562 -28508008 + AluSq SINE Alu 1 303 -10 7062 195 10 16 chr21 16399562 16399878 -28507692 - L1PB4 LINE L1 -2051 5167 4851 1785 159 133 18 chr21 16399878 16400262 -28507308 + MSTA LTR MaLR 1 428 0 9232 140 27 36 chr21 16400264 16401845 -28505725 + MSTA-int LTR MaLR 3 1569 -11 1237 181 107 22 chr21 16401846 16402116 -28505454 + MSTA LTR MaLR 3 295 -133 7276 251 56 32 chr21 16402146 16402781 -28504789 - L1PB4 LINE L1 -3012 4196 3578 369 0 0 0 chr21 16402781 16402822 -28504748 + (TG)n Simple_repeat Simple_repeat 1 41 0 7276 251 56 32 chr21 16402822 16405653 -28501917 - L1PB4 LINE L1 -3630 3578 594 1870 142 144 21 chr21 16405653 16406034 -28501536 - MSTA LTR MaLR 0 428 1 7276 251 56 32 chr21 16406034 16406624 -28500946 - L1PB4 LINE L1 -6614 594 20 23 54 0 0 chr21 16407156 16407193 -28500377 + AT_rich Low_complexity Low_complexity 1 37 0 259 295 82 41 chr21 16407516 16407638 -28499932 + HAL1 LINE L1 4 130 -2377 407 319 54 28 chr21 16408250 16408607 -28498963 + HAL1 LINE L1 841 1263 -1244 14528 174 43 17 chr21 16408639 16412706 -28494864 + L1MA2 LINE L1 17 3980 -3743 2100 150 0 0 chr21 16412706 16413012 -28494558 + AluSx SINE Alu 3 308 -4 14528 174 43 17 chr21 16413012 16413830 -28493740 + L1MA2 LINE L1 3980 4776 -2947 5215 156 38 30 chr21 16413830 16414893 -28492677 + MER11C LTR ERVK 1 1071 0 14528 174 43 17 chr21 16414893 16417252 -28490318 + L1MA2 LINE L1 4776 7723 0 34 24 0 0 chr21 16417253 16417294 -28490276 + AT_rich Low_complexity Low_complexity 1 41 0 445 317 103 12 chr21 16417332 16417761 -28489809 + HAL1 LINE L1 1343 1810 -697 306 230 62 101 chr21 16417832 16418041 -28489529 + HAL1 LINE L1 1948 2148 -359 269 291 131 35 chr21 16418260 16418573 -28488997 + HAL1 LINE L1 2165 2507 0 194 377 0 0 chr21 16418754 16418836 -28488734 + MIR3 SINE MIR 77 159 -49 2210 120 22 27 chr21 16418871 16419237 -28488333 + THE1B LTR MaLR 1 364 0 1652 289 51 8 chr21 16421298 16421786 -28485784 - MLT1H1 LTR MaLR -2 553 45 231 300 154 18 chr21 16421798 16421908 -28485662 + MIR SINE MIR 111 235 -27 1935 124 79 25 chr21 16422050 16422404 -28485166 + THE1C LTR MaLR 1 373 -2 531 284 95 93 chr21 16422832 16423370 -28484200 + LTR67 LTR ERVL 11 549 -8 461 261 39 20 chr21 16423430 16423583 -28483987 + MER5B DNA MER1_type 1 156 -22 1222 322 86 64 chr21 16423587 16424348 -28483222 + ERVL LTR ERVL 1255 2017 -3637 2318 97 3 3 chr21 16424348 16424659 -28482911 - AluY SINE Alu 0 311 1 1222 322 86 64 chr21 16424659 16425246 -28482324 + ERVL LTR ERVL 2017 2590 -3064 256 279 12 23 chr21 16425519 16425605 -28481965 + ERVL LTR ERVL 3776 3860 -1904 269 258 34 11 chr21 16425713 16425802 -28481768 + ERVL LTR ERVL 3962 4052 -1433 338 338 58 0 chr21 16425849 16425988 -28481582 + ERVL LTR ERVL 4355 4501 -1153 269 301 21 32 chr21 16426260 16426353 -28481217 + ERVL LTR ERVL 4859 4950 -535 315 0 0 0 chr21 16426702 16426737 -28480833 + (TG)n Simple_repeat Simple_repeat 2 36 0 21 0 0 0 chr21 16427556 16427577 -28479993 + AT_rich Low_complexity Low_complexity 1 21 0 646 261 88 65 chr21 16428159 16428465 -28479105 + MLT1H1 LTR MaLR 25 379 -216 207 245 160 43 chr21 16429854 16429948 -28477622 - L2 LINE L2 0 3272 3168 7104 121 17 6 chr21 16430104 16431246 -28476324 + L1MA1 LINE L1 4467 5639 -663 2005 131 147 26 chr21 16431246 16431627 -28475943 - MSTA LTR MaLR 0 428 2 7104 121 17 6 chr21 16431627 16432299 -28475271 + L1MA1 LINE L1 5639 6302 0 1902 102 69 7 chr21 16432325 16432599 -28474971 - AluSq SINE Alu -21 292 2 489 252 182 51 chr21 16432712 16432948 -28474622 + MLT1H LTR MaLR 326 546 -3 286 363 84 23 chr21 16433484 16433746 -28473824 + L2 LINE L2 211 488 -2826 260 324 0 0 chr21 16435439 16435513 -28472057 - L2 LINE L2 -63 3209 3136 284 30 0 91 chr21 16435544 16435610 -28471960 + (TAAA)n Simple_repeat Simple_repeat 1 60 0 195 303 11 67 chr21 16436061 16436150 -28471420 - L2 LINE L2 -1 3312 3229 508 325 34 5 chr21 16436936 16437142 -28470428 - L1ME1 LINE L1 -5 6161 5950 340 299 194 0 chr21 16437631 16437765 -28469805 - MIR3 SINE MIR -6 202 43 203 290 14 0 chr21 16438482 16438551 -28469019 + (TA)n Simple_repeat Simple_repeat 2 71 0 730 295 126 28 chr21 16438910 16439054 -28468516 + L2 LINE L2 2059 2188 -1126 1331 94 133 0 chr21 16439054 16439257 -28468313 + MER30 DNA MER1_type 1 230 0 730 295 126 28 chr21 16439257 16439502 -28468068 + L2 LINE L2 2188 2486 -828 202 349 47 8 chr21 16439601 16439730 -28467840 + L2 LINE L2 2715 2848 -466 1515 172 20 40 chr21 16441073 16441282 -28466288 + LTR53 LTR ERVL 1 204 -315 1275 205 72 61 chr21 16441282 16441673 -28465897 - MSTD LTR MaLR 0 396 2 1515 172 20 40 chr21 16441673 16441765 -28465805 + LTR53 LTR ERVL 204 296 -223 1433 72 6 6 chr21 16441767 16441947 -28465623 + AluSq SINE Alu 3 182 -131 1005 246 67 0 chr21 16441957 16442181 -28465389 + LTR53 LTR ERVL 281 519 0 352 281 156 62 chr21 16442642 16442866 -28464704 - MIR SINE MIR 0 262 18 200 351 65 45 chr21 16442942 16443096 -28464474 + MIR SINE MIR 62 218 -44 254 269 98 72 chr21 16443141 16443334 -28464236 - L2 LINE L2 -2 3311 3114 237 22 0 67 chr21 16443430 16443475 -28464095 + (TTAA)n Simple_repeat Simple_repeat 3 44 0 1052 109 0 0 chr21 16443475 16443613 -28463957 - AluSg/x SINE Alu -27 283 146 2221 122 9 212 chr21 16443707 16443899 -28463671 + Tigger1 DNA MER2_type 1900 2129 -289 623 206 79 16 chr21 16443899 16444025 -28463545 + FRAM SINE Alu 20 153 -23 2221 122 9 212 chr21 16444025 16444357 -28463213 + Tigger1 DNA MER2_type 2129 2417 -1 651 134 0 55 chr21 16444359 16444486 -28463084 - L1 LINE L1 -1542 4604 4485 535 186 25 103 chr21 16445007 16445211 -28462359 + L1MB7 LINE L1 5989 6176 -8 476 274 15 69 chr21 16445214 16445442 -28462128 + L1MC5 LINE L1 6721 6963 -845 261 0 0 0 chr21 16445537 16445566 -28462004 + (T)n Simple_repeat Simple_repeat 1 29 0 644 223 23 0 chr21 16445567 16445697 -28461873 - MLT1E LTR MaLR -47 546 414 989 198 20 122 chr21 16445722 16445883 -28461687 + L1M4c LINE L1 1221 1330 -5054 2448 65 13 3 chr21 16445883 16446191 -28461379 + AluY SINE Alu 1 311 0 989 198 20 122 chr21 16446191 16446373 -28461197 + L1M4c LINE L1 1330 1529 -4855 27 49 0 0 chr21 16446909 16446950 -28460620 + AT_rich Low_complexity Low_complexity 1 41 0 414 39 0 0 chr21 16447757 16447809 -28459761 + (TG)n Simple_repeat Simple_repeat 1 52 0 591 277 25 0 chr21 16448029 16448188 -28459382 + MIR SINE MIR 100 262 0 896 190 48 70 chr21 16448776 16449200 -28458370 - MLT1B LTR MaLR -2 384 5 280 375 9 9 chr21 16449564 16449676 -28457894 + L2 LINE L2 2588 2699 -615 612 107 29 0 chr21 16449945 16450048 -28457522 - L1PA4 LINE L1 0 6155 6050 293 219 78 0 chr21 16450957 16451021 -28456549 + MLT1I LTR MaLR 107 175 -234 1324 255 111 24 chr21 16451357 16451816 -28455754 + LTR40a LTR ERVL 19 517 -2 203 61 30 0 chr21 16451853 16451886 -28455684 + (TCTA)n Simple_repeat Simple_repeat 1 34 0 2218 127 0 0 chr21 16453691 16453998 -28453572 + AluSc SINE Alu 1 307 -2 234 82 0 82 chr21 16454565 16454626 -28452944 - LTR66 LTR ERVL -157 453 398 187 211 14 14 chr21 16454626 16454697 -28452873 + (CATA)n Simple_repeat Simple_repeat 2 72 0 207 333 0 0 chr21 16456917 16456989 -28450581 + (TG)n Simple_repeat Simple_repeat 2 73 0 250 302 62 42 chr21 16458074 16458170 -28449400 + MIR3 SINE MIR 75 172 -36 30 59 0 0 chr21 16459133 16459184 -28448386 + AT_rich Low_complexity Low_complexity 1 51 0 828 303 29 0 chr21 16461366 16461607 -28445963 + MIR SINE MIR 15 262 0 22 35 0 0 chr21 16462102 16462131 -28445439 + AT_rich Low_complexity Low_complexity 1 29 0 2521 40 3 3 chr21 16463019 16463322 -28444248 + AluY SINE Alu 1 303 -8 2132 85 3 33 chr21 16463806 16464130 -28443440 - AluY SINE Alu 0 311 12 2209 156 5 13 chr21 16464187 16464565 -28443005 + THE1C LTR MaLR 1 375 0 839 173 7 27 chr21 16465470 16465620 -28441950 - MER58B DNA MER1_type 0 341 195 382 329 64 30 chr21 16465640 16465874 -28441696 + MLT1L LTR MaLR 22 263 -352 382 206 0 0 chr21 16467649 16467722 -28439848 - MLT1A1 LTR MaLR 0 365 293 3016 128 17 12 chr21 16467727 16468322 -28439248 - MER4E LTR ERV1 0 779 1 651 265 15 20 chr21 16468324 16468528 -28439042 - MLT1A1 LTR MaLR -76 289 87 3444 208 66 63 chr21 16468535 16468669 -28438901 + MER21A LTR ERV1 30 162 -769 2309 101 3 0 chr21 16468669 16468977 -28438593 + AluSg1 SINE Alu 1 309 0 3444 208 66 63 chr21 16468977 16469735 -28437835 + MER21A LTR ERV1 162 925 -6 500 151 70 0 chr21 16469744 16469830 -28437740 - MLT1A1 LTR MaLR -278 96 5 417 20 0 0 chr21 16469853 16469903 -28437667 + (TG)n Simple_repeat Simple_repeat 1 50 0 1460 247 84 18 chr21 16470159 16470684 -28436886 - MLT1E LTR MaLR -2 591 1 1715 243 7 41 chr21 16470921 16471358 -28436212 - MLT1E2 LTR MaLR 0 626 205 276 264 49 62 chr21 16471334 16471478 -28436092 - MLT1E2 LTR MaLR -372 254 113 * 482 218 24 24 chr21 16471481 16471605 -28435965 + MER34 LTR ERV1 10 133 -409 527 246 146 69 chr21 16471656 16471944 -28435626 - MLT1J1 LTR MaLR -8 438 129 274 220 0 0 chr21 16471944 16471994 -28435576 - MLT1J2 LTR MaLR -371 79 30 374 235 8 92 chr21 16472328 16472447 -28435123 + LTR48 LTR ERV1 672 780 -7 353 160 223 53 chr21 16472506 16472600 -28434970 - MLT1J1 LTR MaLR -514 110 1 427 226 0 20 chr21 16474165 16474267 -28433303 - L1 LINE L1 -985 5161 5062 205 171 0 0 chr21 16474268 16474303 -28433267 + (CATA)n Simple_repeat Simple_repeat 2 36 0 44 35 0 0 chr21 16474316 16474374 -28433196 + AT_rich Low_complexity Low_complexity 1 58 0 1125 250 132 97 chr21 16474561 16475120 -28432450 - MLT1G LTR MaLR -14 576 3 2353 100 0 0 chr21 16476420 16476731 -28430839 + AluSq SINE Alu 1 311 -2 763 155 171 36 chr21 16476930 16477123 -28430447 + MER20 DNA MER1_type 1 219 0 1461 245 55 36 chr21 16477460 16477954 -28429616 + MLT1D LTR MaLR 3 505 0 471 349 29 0 chr21 16477967 16478139 -28429431 - MIR SINE MIR -67 195 19 6262 82 19 5 chr21 16478197 16479083 -28428487 - L1PA13 LINE L1 0 6163 5265 530 201 43 173 chr21 16479764 16480018 -28427552 - L1ME3A LINE L1 -12 6158 5938 1592 182 4 4 chr21 16480018 16480282 -28427288 - MLT1C LTR MaLR 0 467 204 305 47 23 0 chr21 16480282 16480325 -28427245 + (TC)n Simple_repeat Simple_repeat 2 45 0 1041 198 0 14 chr21 16480340 16480547 -28427023 - MLT1C LTR MaLR -263 204 1 325 322 5 106 chr21 16480548 16480674 -28426896 - L1ME3A LINE L1 -221 5941 5841 704 229 0 0 chr21 16480674 16480805 -28426765 - FLAM_A SINE Alu -1 132 2 325 322 5 106 chr21 16480805 16480877 -28426693 - L1ME3A LINE L1 -321 5841 5763 436 223 18 9 chr21 16480920 16481032 -28426538 - L1ME3A LINE L1 -394 5776 5664 22 56 0 0 chr21 16481439 16481475 -28426095 + AT_rich Low_complexity Low_complexity 1 36 0 490 287 122 18 chr21 16482340 16482504 -28425066 + MIR SINE MIR 12 192 -70 704 275 71 93 chr21 16482506 16482873 -28424697 + L2 LINE L2 2219 2578 -736 896 241 38 5 chr21 16482873 16483085 -28424485 - MER20 DNA MER1_type 0 219 1 704 275 71 93 chr21 16483085 16483113 -28424457 + L2 LINE L2 2578 2605 -709 595 217 51 0 chr21 16483291 16483429 -28424141 - MLT1G1 LTR MaLR -9 586 442 626 332 39 36 chr21 16483443 16483723 -28423847 - MLT1G1 LTR MaLR -314 281 1 1535 241 111 64 chr21 16483782 16484405 -28423165 - MLT1E1 LTR MaLR 0 654 3 401 295 137 66 chr21 16484514 16484996 -28422574 - L1M4 LINE L1 -2267 3879 3364 405 0 0 0 chr21 16485078 16485123 -28422447 + (TG)n Simple_repeat Simple_repeat 2 46 0 2395 77 0 0 chr21 16485176 16485475 -28422095 - AluY SINE Alu -12 299 1 251 192 39 77 chr21 16485576 16485654 -28421916 - MIR SINE MIR -71 191 117 2104 172 42 36 chr21 16485658 16486202 -28421368 + MLT2A2 LTR ERVL 1 554 0 326 288 25 0 chr21 16486206 16486286 -28421284 - MIR SINE MIR -149 113 32 1823 178 37 12 chr21 16486293 16486866 -28420704 - L1M4 LINE L1 -669 5505 4917 1237 261 60 7 chr21 16486868 16487305 -28420265 - L1M4 LINE L1 -2475 3671 3212 950 256 75 25 chr21 16487291 16488934 -28418636 - L1M4 LINE L1 -1318 5326 1856 * 4628 214 53 47 chr21 16488941 16489055 -28418515 - L1M4 LINE L1 -5192 1350 1238 2738 22 0 3 chr21 16489055 16489373 -28418197 - AluYb8 SINE Alu -1 317 1 4628 214 53 47 chr21 16489373 16490586 -28416984 - L1M4 LINE L1 -5304 1238 16 1849 241 56 76 chr21 16490606 16491212 -28416358 - MLT1E1 LTR MaLR -4 650 57 426 79 0 0 chr21 16491965 16492028 -28415542 + (TA)n Simple_repeat Simple_repeat 2 64 0 550 292 84 0 chr21 16492749 16492951 -28414619 + MIR SINE MIR 3 221 -41 399 312 115 27 chr21 16493163 16493186 -28414384 - L2 LINE L2 -64 3249 3229 2139 100 7 3 chr21 16493186 16493477 -28414093 + AluSg SINE Alu 9 300 -10 399 312 115 27 chr21 16493477 16493748 -28413822 - L2 LINE L2 -84 3229 2929 668 319 86 6 chr21 16493812 16494138 -28413432 - L2 LINE L2 -938 2376 2025 29 28 0 0 chr21 16494912 16494948 -28412622 + AT_rich Low_complexity Low_complexity 1 36 0 270 341 79 42 chr21 16495046 16495260 -28412310 - MIR SINE MIR -21 241 20 2466 150 18 23 chr21 16496270 16496704 -28410866 - Tigger2a DNA MER2_type 0 434 3 535 277 61 7 chr21 16497851 16497999 -28409571 + MIR SINE MIR 107 262 0 1661 179 31 0 chr21 16498018 16498308 -28409262 - AluJb SINE Alu -11 301 3 472 293 120 22 chr21 16498634 16498859 -28408711 + MIR SINE MIR 3 249 -13 2517 187 52 61 chr21 16499113 16499257 -28408313 - L1MB8 LINE L1 -15 6163 6019 2228 67 40 0 chr21 16499257 16499556 -28408014 - AluY SINE Alu 0 311 1 2517 187 52 61 chr21 16499556 16500052 -28407518 - L1MB8 LINE L1 -159 6019 5529 187 252 30 114 chr21 16500101 16500232 -28407338 - MIR SINE MIR -123 139 20 764 163 35 0 chr21 16500270 16500411 -28407159 + L1MA9 LINE L1 6167 6312 0 3873 61 2 2 chr21 16502890 16503396 -28404174 - L1PA7 LINE L1 0 6154 5649 268 197 26 26 chr21 16503448 16503524 -28404046 - MLT1K LTR MaLR 0 588 513 1882 191 22 25 chr21 16503526 16503892 -28403678 - MLT1A1 LTR MaLR 0 365 1 318 317 183 17 chr21 16503967 16504197 -28403373 - MLT1K LTR MaLR -168 420 153 26 0 0 0 chr21 16504262 16504288 -28403282 + AT_rich Low_complexity Low_complexity 1 26 0 1073 325 189 23 chr21 16505384 16506298 -28401272 + L2 LINE L2 1307 2372 -942 2034 156 58 67 chr21 16506606 16507055 -28400515 - MER65A LTR ERV1 0 445 1 5203 238 98 51 chr21 16507182 16507496 -28400074 + Charlie6 DNA MER1_type 54 352 -3148 2394 92 0 0 chr21 16507496 16507801 -28399769 - AluSx SINE Alu -7 305 1 5203 238 98 51 chr21 16507801 16509341 -28398229 + Charlie6 DNA MER1_type 352 1995 -1505 870 215 5 5 chr21 16509343 16509543 -28398027 - L1MB8 LINE L1 -692 5476 5277 1356 172 0 19 chr21 16509546 16509807 -28397763 + L1MB1 LINE L1 5873 6128 -40 4399 209 115 31 chr21 16509814 16511205 -28396365 + Charlie6 DNA MER1_type 1993 3500 0 2125 107 0 20 chr21 16511280 16511632 -28395938 + AluSg SINE Alu 1 310 0 514 285 53 108 chr21 16511747 16512497 -28395073 + L2 LINE L2 2379 3169 -144 842 158 27 22 chr21 16512497 16512680 -28394890 - L1MA8 LINE L1 -12 6279 6096 2413 130 14 69 chr21 16512689 16512895 -28394675 - L1MA8 LINE L1 -2 6289 6073 378 0 0 0 chr21 16512895 16512937 -28394633 + (TTTA)n Simple_repeat Simple_repeat 2 43 0 2232 85 0 0 chr21 16512937 16513220 -28394350 - AluY SINE Alu -28 283 1 2413 130 14 69 chr21 16513220 16513505 -28394065 - L1MA8 LINE L1 -216 6075 5824 514 285 53 108 chr21 16513505 16513715 -28393855 + L2 LINE L2 3177 3295 -18 334 194 14 14 chr21 16513883 16513955 -28393615 + MIR3 SINE MIR 119 190 -18 1760 146 40 63 chr21 16514624 16515021 -28392549 + L1MA9 LINE L1 5923 6310 -2 22 56 0 0 chr21 16515062 16515098 -28392472 + AT_rich Low_complexity Low_complexity 1 36 0 1945 133 3 16 chr21 16515195 16515503 -28392067 + AluSx SINE Alu 1 304 -8 3727 196 56 16 chr21 16517176 16518013 -28389557 - L1MC2 LINE L1 -11 6333 5463 1423 231 107 5 chr21 16518543 16518955 -28388615 + MLT1C LTR MaLR 6 459 -8 23 0 0 0 chr21 16519186 16519209 -28388361 + AT_rich Low_complexity Low_complexity 1 23 0 2419 66 0 3 chr21 16519667 16519971 -28387599 - AluY SINE Alu -8 303 1 980 210 101 116 chr21 16520154 16520550 -28387020 + MLT1B LTR MaLR 1 390 0 21 0 0 0 chr21 16521333 16521354 -28386216 + AT_rich Low_complexity Low_complexity 1 21 0 2216 160 20 2 chr21 16522935 16523329 -28384241 - L1 LINE L1 -1972 5593 5193 1047 242 14 0 chr21 16523321 16523602 -28383968 - L1 LINE L1 -2990 4575 4291 * 1195 130 0 0 chr21 16523604 16523773 -28383797 - AluSg/x SINE Alu -13 299 131 14673 145 32 33 chr21 16523773 16524730 -28382840 - L1 LINE L1 -3267 4298 3342 320 0 25 0 chr21 16524730 16524770 -28382800 + (TTA)n Simple_repeat Simple_repeat 3 43 0 3130 39 3 0 chr21 16524770 16525151 -28382419 - L1PA6 LINE L1 -18 6136 5755 14673 145 32 33 chr21 16525151 16528440 -28379130 - L1 LINE L1 -4221 3344 18 955 284 148 52 chr21 16528440 16529008 -28378562 + L2 LINE L2 2436 3118 -195 294 50 0 0 chr21 16529008 16529048 -28378522 + (CA)n Simple_repeat Simple_repeat 2 41 0 955 284 148 52 chr21 16529048 16529265 -28378305 + L2 LINE L2 3118 3313 0 482 229 0 0 chr21 16529585 16529681 -28377889 - MER3 DNA MER1_type -103 106 11 26 0 0 0 chr21 16530358 16530384 -28377186 + AT_rich Low_complexity Low_complexity 1 26 0 216 376 38 15 chr21 16532214 16532347 -28375223 + L2 LINE L2 3170 3305 -8 21 0 0 0 chr21 16532907 16532928 -28374642 + AT_rich Low_complexity Low_complexity 1 21 0 280 337 72 28 chr21 16533251 16533432 -28374138 + MLT1K LTR MaLR 359 547 -41 222 312 0 0 chr21 16533922 16533999 -28373571 + CT-rich Low_complexity Low_complexity 3 79 0 3774 170 10 10 chr21 16534015 16534476 -28373094 - L1MA4 LINE L1 -11 6991 6528 1987 127 49 35 chr21 16534476 16534845 -28372725 - THE1C LTR MaLR -1 374 1 3774 170 10 10 chr21 16534845 16535089 -28372481 - L1MA4 LINE L1 -473 6529 6286 2283 147 3 3 chr21 16535090 16535465 -28372105 - THE1C LTR MaLR 0 375 1 9571 110 70 33 chr21 16535470 16536988 -28370582 - THE1C-int LTR MaLR -6 1574 1 2377 131 11 8 chr21 16536988 16537362 -28370208 - THE1C LTR MaLR 0 375 1 1950 153 9 15 chr21 16537362 16537980 -28369590 - L1MA4 LINE L1 -713 6289 5673 7595 245 133 22 chr21 16537980 16540719 -28366851 - L1MA4 LINE L1 -3787 3061 2 186 71 0 0 chr21 16541181 16541209 -28366361 + (TTAAA)n Simple_repeat Simple_repeat 3 30 0 262 183 77 0 chr21 16541621 16541692 -28365878 + MLT1I LTR MaLR 326 450 0 565 259 42 48 chr21 16542129 16542318 -28365252 + MIR SINE MIR 33 220 -42 323 214 29 86 chr21 16542761 16542901 -28364669 + L1ME3A LINE L1 6016 6147 -23 1901 151 7 0 chr21 16544174 16544465 -28363105 - AluSx SINE Alu -19 293 1 27 29 0 0 chr21 16544530 16544564 -28363006 + AT_rich Low_complexity Low_complexity 1 34 0 2021 157 46 6 chr21 16544801 16545152 -28362418 - MLT1A1 LTR MaLR 0 365 1 182 348 37 55 chr21 16545458 16545622 -28361948 + MIR SINE MIR 53 213 -49 298 306 45 101 chr21 16547148 16547544 -28360026 - MLT1I LTR MaLR -32 377 4 22 23 0 45 chr21 16550132 16550156 -28357414 + AT_rich Low_complexity Low_complexity 1 24 -18 1640 178 54 9 chr21 16550156 16550505 -28357065 - MLT1A1 LTR MaLR 0 365 1 22 23 0 45 chr21 16550505 16550524 -28357046 + AT_rich Low_complexity Low_complexity 24 42 0 1226 147 3 68 chr21 16550765 16550809 -28356761 - L1MA7 LINE L1 -18 6273 6228 339 25 0 0 chr21 16550809 16550849 -28356721 + (TA)n Simple_repeat Simple_repeat 2 41 0 1226 147 3 68 chr21 16550849 16551126 -28356444 - L1MA7 LINE L1 -63 6228 5867 952 215 56 24 chr21 16551150 16551401 -28356169 + MIR SINE MIR 4 262 0 21 0 0 0 chr21 16553239 16553260 -28354310 + AT_rich Low_complexity Low_complexity 1 21 0 2210 141 13 19 chr21 16553892 16554269 -28353301 - THE1C LTR MaLR 0 375 1 220 217 67 17 chr21 16554746 16554806 -28352764 - L2 LINE L2 -10 3303 3241 2286 114 11 8 chr21 16556100 16556452 -28351118 - THE1A LTR MaLR -2 353 1 204 281 0 31 chr21 16557782 16557846 -28349724 + GA-rich Low_complexity Low_complexity 4 65 0 591 172 164 0 chr21 16561414 16561536 -28346034 - FRAM SINE Alu -16 160 19 194 317 17 0 chr21 16561555 16561615 -28345955 + MIR3 SINE MIR 141 201 -7 301 284 151 48 chr21 16562876 16563147 -28344423 - L1M2 LINE L1 -5643 1206 908 228 64 64 0 chr21 16566451 16566498 -28341072 + (TA)n Simple_repeat Simple_repeat 1 50 0 322 233 22 22 chr21 16566502 16566592 -28340978 - L1MC4 LINE L1 -1339 6703 6614 353 255 57 9 chr21 16566597 16566703 -28340867 + L1MC4 LINE L1 6612 6722 -1320 688 97 74 3 chr21 16566703 16567018 -28340552 + (TA)n Simple_repeat Simple_repeat 1 337 0 443 272 183 0 chr21 16567540 16567709 -28339861 + MIR SINE MIR 1 200 -62 241 371 177 0 chr21 16567708 16567832 -28339738 + MER91A DNA MER1_type 15 160 -36 * 219 304 89 37 chr21 16568004 16568139 -28339431 - MIR SINE MIR -118 144 3 43 35 0 0 chr21 16568292 16568349 -28339221 + AT_rich Low_complexity Low_complexity 1 57 0 22 80 0 0 chr21 16568412 16568462 -28339108 + AT_rich Low_complexity Low_complexity 1 50 0 26 88 0 0 chr21 16568779 16568847 -28338723 + AT_rich Low_complexity Low_complexity 1 68 0 262 111 0 69 chr21 16569244 16569349 -28338221 + (TTTA)n Simple_repeat Simple_repeat 1 97 0 29 0 0 0 chr21 16569357 16569386 -28338184 + AT_rich Low_complexity Low_complexity 1 29 0 213 77 6 128 chr21 16569386 16569542 -28338028 + (TTTA)n Simple_repeat Simple_repeat 2 138 0 70 11 0 11 chr21 16569542 16569592 -28337978 + AT_rich Low_complexity Low_complexity 1 51 -36 181 0 0 65 chr21 16569592 16569623 -28337947 + (TTTA)n Simple_repeat Simple_repeat 2 30 0 70 11 0 11 chr21 16569623 16569660 -28337910 + AT_rich Low_complexity Low_complexity 51 87 0 630 93 0 10 chr21 16569718 16569815 -28337755 + L1PA12 LINE L1 6071 6166 -2 21 57 0 0 chr21 16569835 16569870 -28337700 + AT_rich Low_complexity Low_complexity 1 35 0 181 130 65 0 chr21 16572555 16572601 -28334969 + (TCTA)n Simple_repeat Simple_repeat 1 49 0 33 56 0 0 chr21 16575257 16575311 -28332259 + AT_rich Low_complexity Low_complexity 1 54 0 21 0 0 0 chr21 16576339 16576360 -28331210 + AT_rich Low_complexity Low_complexity 1 21 0 26 30 0 0 chr21 16576516 16576549 -28331021 + AT_rich Low_complexity Low_complexity 1 33 0 201 189 0 19 chr21 16576609 16576662 -28330908 + T-rich Low_complexity Low_complexity 4 55 0 22 35 0 0 chr21 16576763 16576792 -28330778 + AT_rich Low_complexity Low_complexity 1 29 0 1001 115 30 12 chr21 16577246 16577411 -28330159 + L1PA11 LINE L1 6007 6174 0 21 0 0 0 chr21 16577483 16577504 -28330066 + AT_rich Low_complexity Low_complexity 1 21 0 33 25 0 0 chr21 16577975 16578015 -28329555 + AT_rich Low_complexity Low_complexity 1 40 0 1770 160 7 3 chr21 16578397 16578684 -28328886 + AluJb SINE Alu 1 288 -24 329 58 19 0 chr21 16578687 16578739 -28328831 + (CAA)n Simple_repeat Simple_repeat 2 54 0 522 29 0 0 chr21 16579170 16579240 -28328330 + L1PA2 LINE L1 6086 6155 0 2083 114 3 10 chr21 16579250 16579547 -28328023 + AluSx SINE Alu 1 295 -17 30 45 0 0 chr21 16579864 16579908 -28327662 + AT_rich Low_complexity Low_complexity 1 44 0 1789 141 21 93 chr21 16580122 16580497 -28327073 - MER7A DNA MER2_type 0 346 1 236 366 24 0 chr21 16580915 16581038 -28326532 - MIR SINE MIR -61 201 76 1878 103 0 0 chr21 16582239 16582491 -28325079 + AluSx SINE Alu 54 305 -7 455 67 0 0 chr21 16582985 16583045 -28324525 + L1P5 LINE L1 5731 5790 -361 316 244 0 0 chr21 16583047 16583137 -28324433 + L1MC4 LINE L1 6614 6703 -1339 207 0 0 0 chr21 16583155 16583178 -28324392 + (CA)n Simple_repeat Simple_repeat 2 24 0 2451 124 0 3 chr21 16583178 16583548 -28324022 + L1PB1 LINE L1 5782 6150 -1 1918 135 68 42 chr21 16586133 16586488 -28321082 + THE1B LTR MaLR 1 364 0 23 0 0 0 chr21 16587660 16587683 -28319887 + AT_rich Low_complexity Low_complexity 1 23 0 43 47 0 0 chr21 16588045 16588109 -28319461 + AT_rich Low_complexity Low_complexity 1 64 0 22 35 0 0 chr21 16588588 16588617 -28318953 + AT_rich Low_complexity Low_complexity 1 29 0 195 42 0 0 chr21 16589452 16589476 -28318094 + (TTTTC)n Simple_repeat Simple_repeat 2 25 0 5372 78 25 6 chr21 16589481 16590213 -28317357 - L1PA8A LINE L1 -13 6118 5373 2202 95 0 3 chr21 16590310 16590638 -28316932 + AluSq SINE Alu 3 329 0 864 194 51 6 chr21 16590794 16590969 -28316601 - MER5A DNA MER1_type -6 183 1 381 284 39 0 chr21 16592126 16592228 -28315342 - MIR SINE MIR -156 106 1 413 254 80 14 chr21 16594119 16594257 -28313313 + MER63 DNA MER1_type 1 773 -289 2351 77 0 22 chr21 16594619 16594932 -28312638 - AluSx SINE Alu -6 306 1 2200 96 0 10 chr21 16596304 16596606 -28310964 + AluY SINE Alu 1 299 -12 207 0 0 0 chr21 16596791 16596814 -28310756 + (T)n Simple_repeat Simple_repeat 1 23 0 2556 50 0 28 chr21 16597180 16597500 -28310070 - AluY SINE Alu 0 311 1 29 0 0 0 chr21 16597549 16597578 -28309992 + AT_rich Low_complexity Low_complexity 1 29 0 2173 97 16 23 chr21 16598161 16598470 -28309100 + AluSc SINE Alu 1 307 -2 373 255 0 19 chr21 16599336 16599442 -28308128 - MER5B DNA MER1_type -2 176 73 2581 48 0 3 chr21 16599682 16599992 -28307578 + AluY SINE Alu 1 309 -2 21 0 0 0 chr21 16601323 16601344 -28306226 + AT_rich Low_complexity Low_complexity 1 21 0 307 359 94 8 chr21 16602199 16602316 -28305254 - MER5A DNA MER1_type 0 189 63 2008 106 4 0 chr21 16602620 16602893 -28304677 + AluSq SINE Alu 36 309 -4 184 277 0 0 chr21 16603135 16603182 -28304388 + MIR SINE MIR 93 139 -69 365 312 41 32 chr21 16603373 16603591 -28303979 + L1MC4 LINE L1 6762 6981 -1061 21 0 0 0 chr21 16603802 16603823 -28303747 + AT_rich Low_complexity Low_complexity 1 21 0 1151 323 166 27 chr21 16603963 16605118 -28302452 + L2 LINE L2 1990 3313 0 2993 179 14 0 chr21 16605793 16606350 -28301220 + L1PB4 LINE L1 5586 6150 -6 2153 88 26 26 chr21 16606395 16606702 -28300868 - AluSx SINE Alu -5 307 1 21 57 0 0 chr21 16606832 16606867 -28300703 + AT_rich Low_complexity Low_complexity 1 35 0 2335 88 3 0 chr21 16607097 16607393 -28300177 + AluSp SINE Alu 1 297 -16 542 244 18 37 chr21 16607674 16607838 -28299732 + L1ME2 LINE L1 5980 6140 -24 1059 284 65 44 chr21 16607846 16608368 -28299202 + L1MC4a LINE L1 6344 6876 -932 375 282 78 7 chr21 16608379 16608521 -28299049 + L1MC4 LINE L1 7517 7668 -374 627 263 59 16 chr21 16608596 16608851 -28298719 + L1MC4 LINE L1 7777 8042 0 316 325 33 33 chr21 16609018 16609169 -28298401 - MIR SINE MIR -98 164 14 3002 168 43 6 chr21 16609768 16610305 -28297265 + MER41D LTR ERV1 1 557 0 596 289 87 14 chr21 16612659 16612894 -28294676 + MIR SINE MIR 14 262 0 2505 56 0 3 chr21 16613737 16614042 -28293528 + AluY SINE Alu 1 304 -7 196 109 22 22 chr21 16614191 16614237 -28293333 + (TAAA)n Simple_repeat Simple_repeat 3 48 0 24 77 0 0 chr21 16614463 16614515 -28293055 + AT_rich Low_complexity Low_complexity 1 52 0 523 263 0 72 chr21 16617596 16617790 -28289780 + MER5A DNA MER1_type 7 186 -3 728 116 20 20 chr21 16618053 16618199 -28289371 + CT-rich Low_complexity Low_complexity 3 148 0 1993 130 30 10 chr21 16618210 16618511 -28289059 - AluSx SINE Alu -5 307 1 24 32 0 0 chr21 16618572 16618603 -28288967 + AT_rich Low_complexity Low_complexity 1 31 0 216 0 0 0 chr21 16620775 16620799 -28286771 + (TTTG)n Simple_repeat Simple_repeat 1 24 0 321 333 18 0 chr21 16621167 16621281 -28286289 + GA-rich Low_complexity Low_complexity 1 116 0 1033 244 98 34 chr21 16622325 16622734 -28284836 + Charlie4a DNA MER1_type 4 438 -70 592 203 14 132 chr21 16622921 16623050 -28284520 - MER5A DNA MER1_type -2 187 91 2682 23 0 0 chr21 16623050 16623354 -28284216 - AluY SINE Alu -7 304 1 592 203 14 132 chr21 16623354 16623436 -28284134 - MER5A DNA MER1_type -98 91 1 27 29 0 0 chr21 16623907 16623941 -28283629 + AT_rich Low_complexity Low_complexity 1 34 0 261 0 0 0 chr21 16626243 16626272 -28281298 + (CA)n Simple_repeat Simple_repeat 2 30 0 4723 45 12 2 chr21 16626465 16627049 -28280521 - L1PA7 LINE L1 -1 6153 5564 3436 60 0 52 chr21 16627050 16627719 -28279851 + L1PA7 LINE L1 4918 5565 -589 6871 161 12 24 chr21 16627903 16628801 -28278769 + L1M1 LINE L1 3964 4850 -1450 180 0 0 0 chr21 16628801 16628821 -28278749 + (T)n Simple_repeat Simple_repeat 1 20 0 6871 161 12 24 chr21 16628821 16629707 -28277863 + L1M1 LINE L1 4850 5745 -555 219 391 29 0 chr21 16629862 16629931 -28277639 - L2 LINE L2 -68 3204 3134 21 57 0 0 chr21 16630322 16630357 -28277213 + AT_rich Low_complexity Low_complexity 1 35 0 1327 176 57 7 chr21 16630924 16631203 -28276367 + L1MA7 LINE L1 5926 6218 -73 226 141 16 16 chr21 16631292 16631356 -28276214 + L1MA7 LINE L1 6216 6279 -12 376 274 112 42 chr21 16632013 16632148 -28275422 + MIR SINE MIR 17 174 -88 2259 95 3 0 chr21 16632148 16632444 -28275126 - AluSq SINE Alu -16 297 1 376 274 112 42 chr21 16632444 16632523 -28275047 + MIR SINE MIR 174 246 -16 807 38 19 0 chr21 16633257 16633362 -28274208 + L1PA5 LINE L1 6039 6145 -9 22 0 0 0 chr21 16633362 16633384 -28274186 + AT_rich Low_complexity Low_complexity 1 22 0 873 47 0 0 chr21 16633431 16633538 -28274032 + L1PA5 LINE L1 6039 6145 -9 22 0 0 0 chr21 16633538 16633560 -28274010 + AT_rich Low_complexity Low_complexity 1 22 0 898 37 0 0 chr21 16633607 16633714 -28273856 + L1PA5 LINE L1 6039 6145 -9 853 65 0 0 chr21 16633785 16633892 -28273678 + L1PA5 LINE L1 6039 6145 -9 26 0 0 0 chr21 16633892 16633918 -28273652 + AT_rich Low_complexity Low_complexity 1 26 0 192 40 0 0 chr21 16635559 16635584 -28271986 + (TG)n Simple_repeat Simple_repeat 2 26 0 1362 57 0 0 chr21 16635622 16635798 -28271772 + (CATCC)n Simple_repeat Simple_repeat 3 178 0 30 0 0 0 chr21 16636273 16636303 -28271267 + AT_rich Low_complexity Low_complexity 1 30 0 286 313 78 36 chr21 16637005 16637171 -28270399 + MIR SINE MIR 11 183 -79 2396 65 3 3 chr21 16637289 16637595 -28269975 - AluSp SINE Alu -7 306 1 27 29 0 0 chr21 16638101 16638135 -28269435 + AT_rich Low_complexity Low_complexity 1 34 0 2358 68 7 0 chr21 16639207 16639516 -28268054 - AluY SINE Alu 0 311 1 4332 161 11 21 chr21 16640067 16640889 -28266681 + L1MA4 LINE L1 5480 6293 -7 2269 130 28 8 chr21 16641091 16641444 -28266126 - THE1B LTR MaLR -4 360 1 28 0 0 0 chr21 16642463 16642491 -28265079 + AT_rich Low_complexity Low_complexity 1 28 0 252 212 0 0 chr21 16643660 16643726 -28263844 + (TA)n Simple_repeat Simple_repeat 2 67 0 1467 103 0 5 chr21 16645718 16645921 -28261649 + AluSg/x SINE Alu 83 284 -28 25 51 0 0 chr21 16646105 16646144 -28261426 + AT_rich Low_complexity Low_complexity 1 39 0 2183 124 22 3 chr21 16646437 16646793 -28260777 + L1MA3 LINE L1 5943 6305 0 24 0 0 0 chr21 16647580 16647604 -28259966 + AT_rich Low_complexity Low_complexity 1 24 0 350 348 139 30 chr21 16647699 16648325 -28259245 + L2 LINE L2 2136 2829 -485 21 0 0 0 chr21 16648553 16648574 -28258996 + AT_rich Low_complexity Low_complexity 1 21 0 2466 47 0 3 chr21 16648657 16648958 -28258612 + AluY SINE Alu 1 300 -11 339 330 17 0 chr21 16649682 16649797 -28257773 + MIR SINE MIR 146 262 0 1003 84 51 6 chr21 16650225 16650409 -28257161 - L1P LINE L1 -743 5403 5226 4795 111 8 1 chr21 16650409 16651126 -28256444 + L1PA13 LINE L1 5440 6162 -1 300 238 10 40 chr21 16651145 16651246 -28256324 + MER103 DNA DNA 67 164 -2 23 33 0 0 chr21 16651405 16651435 -28256135 + AT_rich Low_complexity Low_complexity 1 30 0 238 352 23 47 chr21 16652465 16652593 -28254977 - MIR SINE MIR -79 183 59 21 0 0 0 chr21 16654404 16654425 -28253145 + AT_rich Low_complexity Low_complexity 1 21 0 796 228 12 0 chr21 16654530 16654701 -28252869 - FAM SINE Alu -2 173 1 729 154 0 0 chr21 16654943 16655060 -28252510 - AluSq/x SINE Alu -196 117 1 348 103 0 0 chr21 16656561 16656619 -28250951 + (GA)n Simple_repeat Simple_repeat 2 59 0 23 0 0 0 chr21 16656945 16656968 -28250602 + AT_rich Low_complexity Low_complexity 1 23 0 2207 162 39 34 chr21 16657911 16658455 -28249115 + MLT2A2 LTR ERVL 1 553 -1 22 0 0 0 chr21 16658530 16658552 -28249018 + AT_rich Low_complexity Low_complexity 1 22 0 1612 194 0 29 chr21 16658921 16659236 -28248334 - AluJo SINE Alu -5 307 2 235 323 0 0 chr21 16660099 16660161 -28247409 - L2 LINE L2 -15 3257 3196 192 152 0 0 chr21 16660177 16660210 -28247360 + (TTCA)n Simple_repeat Simple_repeat 2 34 0 232 305 63 11 chr21 16660238 16660333 -28247237 - MIR SINE MIR -100 162 63 186 189 0 0 chr21 16660575 16660612 -28246958 + GA-rich Low_complexity Low_complexity 3 39 0 21 0 0 0 chr21 16663077 16663098 -28244472 + AT_rich Low_complexity Low_complexity 1 21 0 2522 50 0 0 chr21 16663326 16663629 -28243941 + AluY SINE Alu 1 303 -8 395 340 124 21 chr21 16664096 16664378 -28243192 - L3 LINE CR1 -47 1530 1220 1742 157 28 3 chr21 16665110 16665396 -28242174 - AluSx SINE Alu -19 293 1 381 235 0 3 chr21 16665693 16665783 -28241787 + AluJ/FLAM SINE Alu 1 68 -234 414 60 0 60 chr21 16665788 16665855 -28241715 + HERVK14 LTR ERVK 5880 5942 -3 1168 169 15 10 chr21 16665860 16666061 -28241509 + AluJo SINE Alu 93 294 -18 619 281 78 66 chr21 16666703 16666959 -28240611 - MIR SINE MIR -1 261 3 596 305 64 58 chr21 16668239 16668774 -28238796 + L2 LINE L2 2510 3312 -1 1821 169 30 21 chr21 16669231 16669603 -28237967 + THE1C LTR MaLR 1 375 0 183 222 95 32 chr21 16669799 16669862 -28237708 + L2 LINE L2 3200 3266 -6 594 290 5 21 chr21 16670235 16670452 -28237118 + L1M4 LINE L1 4186 4396 -1750 305 290 0 0 chr21 16671756 16671849 -28235721 + (TCTA)n Simple_repeat Simple_repeat 2 94 0 525 251 42 54 chr21 16672407 16672646 -28234924 + MER106A DNA MER1_type 1 236 0 233 286 307 21 chr21 16673444 16673636 -28233934 + MIR SINE MIR 3 249 -13 21 36 0 0 chr21 16674219 16674247 -28233323 + AT_rich Low_complexity Low_complexity 1 28 0 29 60 0 0 chr21 16675789 16675839 -28231731 + AT_rich Low_complexity Low_complexity 1 50 0 288 341 38 0 chr21 16676105 16676237 -28231333 + MIR SINE MIR 103 239 -23 210 362 184 5 chr21 16676501 16676697 -28230873 + MIR SINE MIR 32 262 0 23 33 0 0 chr21 16676798 16676828 -28230742 + AT_rich Low_complexity Low_complexity 1 30 0 2809 184 77 2 chr21 16677809 16678384 -28229186 - L1MB1 LINE L1 -1 6167 5550 1599 205 40 5 chr21 16678385 16678780 -28228790 - L1MB1 LINE L1 -1220 4926 4518 237 344 25 33 chr21 16679767 16679889 -28227681 - MER5A DNA MER1_type -50 139 19 25 31 0 0 chr21 16680502 16680534 -28227036 + AT_rich Low_complexity Low_complexity 1 32 0 320 293 122 24 chr21 16680569 16680733 -28226837 - MIR SINE MIR -4 258 79 187 246 15 92 chr21 16680787 16680852 -28226718 - MIR SINE MIR -202 60 1 21 57 0 0 chr21 16681348 16681383 -28226187 + AT_rich Low_complexity Low_complexity 1 35 0 285 280 50 0 chr21 16682246 16682346 -28225224 - MER103 DNA DNA -51 115 11 784 171 22 15 chr21 16683316 16683573 -28223997 + CT-rich Low_complexity Low_complexity 1 258 0 2098 100 30 0 chr21 16683597 16683896 -28223674 - AluSq SINE Alu 0 313 6 26 50 0 0 chr21 16684793 16684833 -28222737 + AT_rich Low_complexity Low_complexity 1 40 0 504 273 201 10 chr21 16685550 16685744 -28221826 - MIR SINE MIR -1 261 31 464 299 32 6 chr21 16686158 16686315 -28221255 + MLT1J2 LTR MaLR 6 166 -284 1036 193 173 24 chr21 16688929 16689224 -28218346 - MER44D DNA MER2_type 0 609 1 49 66 0 0 chr21 16689824 16689915 -28217655 + AT_rich Low_complexity Low_complexity 1 91 0 369 0 0 0 chr21 16689965 16690006 -28217564 + (TG)n Simple_repeat Simple_repeat 2 42 0 35 0 0 0 chr21 16691306 16691341 -28216229 + AT_rich Low_complexity Low_complexity 1 35 0 206 403 40 0 chr21 16691718 16691842 -28215728 - L2 LINE L2 0 3313 3185 2872 3 0 0 chr21 16692058 16692371 -28215199 + AluYb8 SINE Alu 1 313 -5 227 301 18 62 chr21 16693900 16694013 -28213557 - MIR SINE MIR -153 109 2 22 0 0 0 chr21 16694067 16694089 -28213481 + AT_rich Low_complexity Low_complexity 1 22 0 189 204 23 0 chr21 16696672 16696716 -28210854 + L2 LINE L2 3269 3313 0 26 0 0 0 chr21 16697118 16697144 -28210426 + AT_rich Low_complexity Low_complexity 1 26 0 29 0 0 0 chr21 16697188 16697217 -28210353 + AT_rich Low_complexity Low_complexity 1 29 0 377 307 124 27 chr21 16697541 16697766 -28209804 + MIR SINE MIR 3 249 -13 351 0 0 0 chr21 16698034 16698073 -28209497 + (CA)n Simple_repeat Simple_repeat 1 39 0 1095 110 64 0 chr21 16699680 16699853 -28207717 + L1PA13 LINE L1 5980 6163 0 307 350 77 16 chr21 16699947 16700141 -28207429 + MIR SINE MIR 7 212 -50 389 225 13 37 chr21 16700456 16700632 -28206938 + MER46C DNA MER2_type 79 2731 0 34 42 0 0 chr21 16700811 16700859 -28206711 + AT_rich Low_complexity Low_complexity 1 48 0 33 66 0 0 chr21 16702945 16703006 -28204564 + AT_rich Low_complexity Low_complexity 1 61 0 484 316 93 45 chr21 16703267 16703618 -28203952 + MLT1L LTR MaLR 170 544 -71 2167 96 0 3 chr21 16703618 16703909 -28203661 - AluSc SINE Alu -19 290 1 484 316 93 45 chr21 16703909 16703953 -28203617 + MLT1L LTR MaLR 544 584 -31 424 300 15 15 chr21 16704059 16704189 -28203381 - MIR SINE MIR -114 148 19 201 175 0 0 chr21 16704432 16704472 -28203098 + CT-rich Low_complexity Low_complexity 3 42 0 534 31 0 0 chr21 16705463 16705527 -28202043 + (CA)n Simple_repeat Simple_repeat 2 65 0 204 171 0 49 chr21 16705527 16705568 -28202002 - MIR SINE MIR -167 95 57 28 29 0 0 chr21 16705779 16705814 -28201756 + AT_rich Low_complexity Low_complexity 1 35 0 318 259 146 45 chr21 16706867 16707087 -28200483 + HAL1 LINE L1 1060 1301 -1206 264 200 0 0 chr21 16707087 16707152 -28200418 + GA-rich Low_complexity Low_complexity 1 65 0 304 323 135 18 chr21 16708313 16708595 -28198975 - L2 LINE L2 -1 3312 2998 1929 156 46 22 chr21 16708646 16709012 -28198558 - THE1C LTR MaLR 0 375 1 9214 131 50 12 chr21 16709012 16710531 -28197039 - THE1C-int LTR MaLR 0 1580 4 1972 132 62 14 chr21 16710531 16710883 -28196687 - THE1C LTR MaLR -3 372 1 216 360 33 20 chr21 16711065 16711215 -28196355 + L3 LINE CR1 1248 1399 -178 417 54 0 0 chr21 16712382 16712438 -28195132 + (TC)n Simple_repeat Simple_repeat 1 56 0 346 294 74 23 chr21 16714178 16714354 -28193216 + MIR SINE MIR 22 201 -61 2427 74 0 0 chr21 16714359 16714658 -28192912 + AluY SINE Alu 1 299 -12 456 67 0 0 chr21 16714658 16714718 -28192852 + (TCTA)n Simple_repeat Simple_repeat 2 61 0 201 283 50 0 chr21 16715311 16715371 -28192199 - L2 LINE L2 -20 3293 3231 285 399 18 6 chr21 16717006 16717174 -28190396 - MIR SINE MIR -72 190 21 1178 238 44 0 chr21 16717362 16717660 -28189910 + L1MD3 LINE L1 7674 7984 -11 5926 179 5 3 chr21 16717690 16719619 -28187951 + L1PA16 LINE L1 4234 6166 0 2263 85 3 0 chr21 16720125 16720419 -28187151 + AluSc SINE Alu 10 304 -5 524 307 95 13 chr21 16720553 16720784 -28186786 + MIR SINE MIR 13 262 0 348 324 61 37 chr21 16723343 16723834 -28183736 + L1MC/D LINE L1 4713 5215 -931 664 305 40 34 chr21 16723900 16724225 -28183345 - LTR16C LTR ERVL -32 459 133 232 321 96 55 chr21 16724543 16724814 -28182756 + L1MC/D LINE L1 5525 5806 -2002 1069 198 8 57 chr21 16725303 16725550 -28182020 - AluJb SINE Alu 0 312 78 690 277 74 68 chr21 16726875 16727402 -28180168 - HAL1b LINE L1 -747 601 72 677 174 0 7 chr21 16727676 16727814 -28179756 + CT-rich Low_complexity Low_complexity 1 137 0 216 0 0 0 chr21 16730590 16730614 -28176956 + (CTG)n Simple_repeat Simple_repeat 1 24 0 26 30 0 0 chr21 16730808 16730841 -28176729 + AT_rich Low_complexity Low_complexity 1 33 0 798 130 18 27 chr21 16731052 16731275 -28176295 + CT-rich Low_complexity Low_complexity 1 221 0 2023 98 0 44 chr21 16731294 16731590 -28175980 - AluSg1 SINE Alu -22 287 5 1207 161 0 0 chr21 16731597 16731789 -28175781 - AluJo SINE Alu -15 297 106 24 0 0 0 chr21 16731798 16731822 -28175748 + AT_rich Low_complexity Low_complexity 1 24 0 5027 193 26 22 chr21 16732046 16733623 -28173947 - L1MA10 LINE L1 -3 6331 4748 2796 190 28 14 chr21 16733626 16734263 -28173307 + L1MA10 LINE L1 4102 4747 -1399 279 239 0 0 chr21 16735695 16735783 -28171787 + (CA)n Simple_repeat Simple_repeat 2 89 0 24 0 0 0 chr21 16736586 16736610 -28170960 + AT_rich Low_complexity Low_complexity 1 24 0 2028 182 56 25 chr21 16736795 16737080 -28170490 + MER65C LTR ERV1 3 308 -153 2444 77 0 0 chr21 16737080 16737391 -28170179 - AluY SINE Alu 0 311 1 2028 182 56 25 chr21 16737391 16737550 -28170020 + MER65C LTR ERV1 308 461 0 673 325 13 21 chr21 16737692 16737926 -28169644 + MLT1I LTR MaLR 176 407 -2 191 383 92 0 chr21 16738020 16738140 -28169430 + MIR3 SINE MIR 78 208 0 186 312 321 0 chr21 16738786 16738895 -28168675 + MER5A DNA MER1_type 40 183 -6 273 323 71 39 chr21 16739165 16739320 -28168250 + MIR SINE MIR 2 161 -101 1959 139 0 7 chr21 16739851 16740152 -28167418 - AluSx SINE Alu -13 299 1 603 292 21 79 chr21 16740363 16740603 -28166967 - MIR SINE MIR -1 261 36 469 323 104 70 chr21 16740619 16741148 -28166422 + MLT2F LTR ERVL 6 552 -111 2457 32 3 29 chr21 16741273 16741582 -28165988 - AluY SINE Alu -10 301 1 428 242 27 7 chr21 16742746 16742895 -28164675 + (TA)n Simple_repeat Simple_repeat 2 153 0 182 182 0 45 chr21 16743789 16743833 -28163737 - L2 LINE L2 -15 3257 3216 567 294 33 28 chr21 16744053 16744233 -28163337 - MIR SINE MIR -52 210 30 8085 99 31 5 chr21 16746111 16747267 -28160303 + THE1A-int LTR MaLR 395 1580 0 2176 135 17 9 chr21 16747267 16747615 -28159955 + THE1A LTR MaLR 1 351 -4 23 54 0 0 chr21 16749416 16749453 -28158117 + AT_rich Low_complexity Low_complexity 1 37 0 1610 209 53 31 chr21 16750233 16750687 -28156883 + MLT1C LTR MaLR 1 464 -3 1532 164 110 7 chr21 16751277 16751558 -28156012 + AluJb SINE Alu 1 310 -2 294 301 20 7 chr21 16752100 16752253 -28155317 + (TA)n Simple_repeat Simple_repeat 2 156 0 11403 34 3 1 chr21 16752970 16754357 -28153213 - L1PA3 LINE L1 -1967 4179 2787 10004 22 0 0 chr21 16754357 16756354 -28151216 + L1PA3 LINE L1 4191 6153 -2 11403 34 3 1 chr21 16756354 16756379 -28151191 - L1P LINE L1 -3359 2787 2764 21 36 0 0 chr21 16757087 16757115 -28150455 + AT_rich Low_complexity Low_complexity 1 28 0 188 335 0 0 chr21 16757153 16757235 -28150335 - MIR SINE MIR -64 144 63 2595 30 3 0 chr21 16757959 16758261 -28149309 + AluY SINE Alu 1 303 -8 2046 100 44 0 chr21 16758878 16759189 -28148381 + AluSq SINE Alu 2 324 0 2275 103 0 7 chr21 16759193 16759503 -28148067 + AluSg SINE Alu 3 310 0 1976 130 0 0 chr21 16759528 16759857 -28147713 - AluSx SINE Alu 0 329 1 22 35 0 0 chr21 16760052 16760081 -28147489 + AT_rich Low_complexity Low_complexity 1 29 0 26 0 0 0 chr21 16760346 16760372 -28147198 + AT_rich Low_complexity Low_complexity 1 26 0 320 333 47 30 chr21 16761060 16761399 -28146171 + L1PA12 LINE L1 11 355 -7226 3174 104 0 2 chr21 16762061 16762513 -28145057 + L1PA7 LINE L1 5704 6154 0 2247 163 25 41 chr21 16762513 16762814 -28144756 - L1MA6 LINE L1 -89 6211 5907 359 110 11 132 chr21 16762814 16762905 -28144665 + MADE1 DNA Mariner 1 80 0 2247 163 25 41 chr21 16762905 16763073 -28144497 - L1MA6 LINE L1 -393 5907 5787 1731 150 88 0 chr21 16763073 16763347 -28144223 - AluSx SINE Alu -14 298 1 2247 163 25 41 chr21 16763347 16763432 -28144138 - L1MA6 LINE L1 -513 5787 5702 * 7755 171 24 24 chr21 16763428 16765031 -28142539 + L1M2 LINE L1 3740 5340 -960 2088 125 14 0 chr21 16765031 16765326 -28142244 + AluSg SINE Alu 1 299 -11 7755 171 24 24 chr21 16765326 16765375 -28142195 + L1M2 LINE L1 5340 5387 -913 1840 164 40 30 chr21 16765375 16765746 -28141824 + THE1C LTR MaLR 1 375 0 7755 171 24 24 chr21 16765746 16766044 -28141526 + L1M2 LINE L1 5387 5708 -592 417 382 24 20 chr21 16766180 16766434 -28141136 + MIR SINE MIR 5 259 -3 387 321 98 11 chr21 16767353 16767537 -28140033 + MIR SINE MIR 47 246 -16 357 24 0 0 chr21 16767726 16767768 -28139802 + (CA)n Simple_repeat Simple_repeat 2 43 0 239 191 12 60 chr21 16769740 16769824 -28137746 + (CATG)n Simple_repeat Simple_repeat 4 83 0 1364 170 4 30 chr21 16770249 16770514 -28137056 + AluJb SINE Alu 1 258 -54 1573 175 12 6 chr21 16770634 16770954 -28136616 - L1MA10 LINE L1 -1 6333 6012 274 327 57 19 chr21 16771051 16771210 -28136360 - L3 LINE CR1 -200 1377 1213 509 168 127 184 chr21 16771211 16771455 -28136115 - MLT2C2 LTR ERVL 0 464 235 2280 170 20 0 chr21 16771455 16771860 -28135710 + L1MB1 LINE L1 5580 5992 -197 2429 148 44 104 chr21 16772240 16772788 -28134782 - MLT2B2 LTR ERVL 0 515 1 2535 102 39 6 chr21 16772793 16773156 -28134414 + THE1C LTR MaLR 1 375 0 508 283 78 29 chr21 16774851 16775095 -28132475 + MIR SINE MIR 6 261 -1 1528 270 106 41 chr21 16776768 16777136 -28130434 - L1M4 LINE L1 -985 5161 4818 2113 112 0 0 chr21 16777136 16777421 -28130149 - AluSx SINE Alu -7 305 21 1528 270 106 41 chr21 16777421 16778266 -28129304 - L1M4 LINE L1 -1328 4818 3869 1638 192 62 30 chr21 16778353 16778754 -28128816 - MLT2D LTR ERVL 0 414 1 239 176 15 59 chr21 16778787 16778838 -28128732 + L1MA9 LINE L1 6244 6293 -19 2793 164 33 4 chr21 16778838 16779321 -28128249 + LOR1a LTR ERV1 1 497 0 239 176 15 59 chr21 16779321 16779337 -28128233 + L1MA9 LINE L1 6293 6308 -4 22 0 0 0 chr21 16780156 16780178 -28127392 + AT_rich Low_complexity Low_complexity 1 22 0 180 0 0 0 chr21 16780418 16780438 -28127132 + (TAAAA)n Simple_repeat Simple_repeat 1 20 0 1960 67 4 11 chr21 16780622 16780889 -28126681 + L1PA7 LINE L1 1687 1951 -4195 22421 84 5 10 chr21 16780931 16781760 -28125810 + L1PA7 LINE L1 2132 2964 -3197 2373 79 3 0 chr21 16781760 16782065 -28125505 + AluY SINE Alu 1 306 -5 22421 84 5 10 chr21 16782065 16785293 -28122277 + L1PA7 LINE L1 2964 6161 0 226 183 17 33 chr21 16785813 16785873 -28121697 + GA-rich Low_complexity Low_complexity 2 60 0 21 0 0 0 chr21 16787317 16787338 -28120232 + AT_rich Low_complexity Low_complexity 1 21 0 273 196 0 0 chr21 16790323 16790379 -28117191 + (TA)n Simple_repeat Simple_repeat 1 56 0 314 272 16 8 chr21 16791967 16792092 -28115478 + (TA)n Simple_repeat Simple_repeat 1 126 0 2174 119 3 0 chr21 16792163 16792457 -28115113 - AluSq SINE Alu -18 295 1 1642 148 0 8 chr21 16793208 16793465 -28114105 + AluJb SINE Alu 34 288 -24 529 267 48 36 chr21 16794969 16795134 -28112436 + MER5A DNA MER1_type 23 189 0 214 351 22 37 chr21 16795163 16795297 -28112273 + L3 LINE CR1 570 701 -876 277 153 0 102 chr21 16795355 16795414 -28112156 - MLT1K LTR MaLR -16 572 520 1167 271 140 27 chr21 16796250 16796771 -28110799 - L1MC4a LINE L1 0 7808 7229 995 179 87 5 chr21 16796799 16797017 -28110553 - MER46A DNA MER2_type 0 236 1 218 180 0 40 chr21 16797116 16797166 -28110404 + (CATA)n Simple_repeat Simple_repeat 2 49 0 5146 54 3 1 chr21 16797401 16798054 -28109516 + L1PA7 LINE L1 5287 5940 -214 233 314 23 12 chr21 16798080 16798166 -28109404 - MER81 DNA DNA 0 114 28 195 409 15 8 chr21 16798176 16798308 -28109262 - L3 LINE CR1 -416 1161 1029 267 376 20 0 chr21 16798947 16799048 -28108522 + MIR SINE MIR 40 142 -66 24 0 0 0 chr21 16800036 16800060 -28107510 + AT_rich Low_complexity Low_complexity 1 24 0 1177 148 19 0 chr21 16800230 16800446 -28107124 + L1MA4A LINE L1 6077 6296 -7 26 0 0 0 chr21 16800458 16800484 -28107086 + AT_rich Low_complexity Low_complexity 1 26 0 212 175 63 0 chr21 16800681 16800744 -28106826 + (CTTAT)n Simple_repeat Simple_repeat 3 69 0 981 247 49 47 chr21 16801600 16802009 -28105561 - L1ME3A LINE L1 -1 6169 5760 204 40 0 0 chr21 16802400 16802425 -28105145 + (TTCA)n Simple_repeat Simple_repeat 4 28 0 1162 292 127 48 chr21 16802468 16803582 -28103988 - L1ME3A LINE L1 -1161 4985 3774 2342 124 22 0 chr21 16803582 16803938 -28103632 - THE1B LTR MaLR 0 364 1 1162 292 127 48 chr21 16803938 16803978 -28103592 - L1ME3A LINE L1 -2372 3774 3739 402 277 114 25 chr21 16804221 16804427 -28103143 - MIR SINE MIR -8 254 24 201 167 0 0 chr21 16804614 16804650 -28102920 + A-rich Low_complexity Low_complexity 6 41 0 185 316 74 63 chr21 16804879 16805069 -28102501 + L2 LINE L2 530 721 -2593 614 335 32 46 chr21 16805828 16806352 -28101218 - L2 LINE L2 -2 3311 2799 2263 301 129 21 chr21 16806352 16807303 -28100267 - L2 LINE L2 -1163 2151 1098 2248 135 26 0 chr21 16807303 16807650 -28099920 - THE1B LTR MaLR -8 356 1 1818 158 21 24 chr21 16807787 16808123 -28099447 - MER1B DNA MER1_type -1 336 2 513 289 147 26 chr21 16809148 16809421 -28098149 - L2 LINE L2 0 3313 3008 23 78 0 0 chr21 16809703 16809754 -28097816 + AT_rich Low_complexity Low_complexity 1 51 0 886 279 56 31 chr21 16809800 16810155 -28097415 - HsTC2 DNA Tc2 -1530 368 5 335 238 107 0 chr21 16810215 16810337 -28097233 + MER103 DNA DNA 7 141 -25 27 29 0 0 chr21 16811002 16811036 -28096534 + AT_rich Low_complexity Low_complexity 1 34 0 1066 35 0 21 chr21 16811823 16811965 -28095605 + L1PA5 LINE L1 6016 6154 0 2424 53 13 0 chr21 16812121 16812421 -28095149 + AluY SINE Alu 1 304 -7 647 146 0 0 chr21 16812524 16812620 -28094950 + FLAM_C SINE Alu 26 121 -22 180 338 29 0 chr21 16812638 16812706 -28094864 - MIR SINE MIR -109 153 84 22 0 0 0 chr21 16813874 16813896 -28093674 + AT_rich Low_complexity Low_complexity 1 22 0 285 29 0 0 chr21 16815251 16815285 -28092285 + (GA)n Simple_repeat Simple_repeat 1 34 0 738 281 121 38 chr21 16815355 16815783 -28091787 + MLT1C LTR MaLR 2 467 0 1125 200 47 59 chr21 16815958 16816397 -28091173 - MLT1B LTR MaLR -7 383 1 268 289 0 0 chr21 16816613 16816689 -28090881 - LTR33 LTR ERVL -443 78 3 30 27 0 0 chr21 16817486 16817523 -28090047 + AT_rich Low_complexity Low_complexity 1 37 0 22 56 0 0 chr21 16817954 16817990 -28089580 + AT_rich Low_complexity Low_complexity 1 36 0 228 235 82 35 chr21 16818310 16818395 -28089175 - MIR SINE MIR -97 165 77 10628 90 8 1 chr21 16820274 16822561 -28085009 + L1PA7 LINE L1 3857 6143 -11 419 35 18 0 chr21 16822562 16822619 -28084951 + (TA)n Simple_repeat Simple_repeat 2 59 0 21 36 0 0 chr21 16823010 16823038 -28084532 + AT_rich Low_complexity Low_complexity 1 28 0 5661 163 22 23 chr21 16823237 16825216 -28082354 - L1MA6 LINE L1 -9 6291 4316 316 92 71 20 chr21 16825664 16825762 -28081808 + (TATAA)n Simple_repeat Simple_repeat 5 107 0 329 332 191 19 chr21 16826450 16826712 -28080858 + L3 LINE CR1 744 1050 -527 308 304 25 0 chr21 16826982 16827061 -28080509 - L2 LINE L2 -8 3264 3184 1743 141 76 25 chr21 16827260 16827615 -28079955 + THE1C LTR MaLR 1 373 -2 7429 118 6 107 chr21 16827618 16829022 -28078548 + THE1C-int LTR MaLR 1 1263 -317 28 48 0 0 chr21 16829363 16829405 -28078165 + AT_rich Low_complexity Low_complexity 1 42 0 1991 130 0 3 chr21 16830432 16830765 -28076805 + AluSx SINE Alu 1 332 0 252 0 0 0 chr21 16831722 16831750 -28075820 + (TAAA)n Simple_repeat Simple_repeat 4 31 0 1406 78 12 121 chr21 16833051 16833308 -28074262 - MER30 DNA MER1_type 0 230 2 1535 207 3 19 chr21 16836699 16837008 -28070562 + AluJo SINE Alu 6 309 -3 207 0 0 0 chr21 16837034 16837057 -28070513 + (CAA)n Simple_repeat Simple_repeat 2 24 0 397 206 57 120 chr21 16838509 16838718 -28068852 + MLT1J2 LTR MaLR 24 219 -231 21 57 0 0 chr21 16841554 16841589 -28065981 + AT_rich Low_complexity Low_complexity 1 35 0 213 39 0 0 chr21 16843985 16844011 -28063559 + (TAAAA)n Simple_repeat Simple_repeat 2 27 0 228 111 0 0 chr21 16844031 16844067 -28063503 + (TC)n Simple_repeat Simple_repeat 2 37 0 1962 229 101 2 chr21 16844200 16844734 -28062836 - L1MC3 LINE L1 -8 7777 7191 315 296 23 0 chr21 16844740 16844828 -28062742 - MLT1F1 LTR MaLR -443 124 35 986 190 51 1 chr21 16844828 16845076 -28062494 - L1MC3 LINE L1 -688 7097 6852 543 233 105 23 chr21 16845105 16845277 -28062293 + MER5A DNA MER1_type 4 189 0 1785 98 28 47 chr21 16845325 16845370 -28062200 - L1MA5 LINE L1 -10 6290 6246 2145 111 7 0 chr21 16845370 16845667 -28061903 - AluSx SINE Alu -13 299 1 1785 98 28 47 chr21 16845667 16845938 -28061632 - L1MA5 LINE L1 -54 6246 5980 336 102 0 0 chr21 16846411 16846460 -28061110 + (TG)n Simple_repeat Simple_repeat 2 50 0 21 0 0 0 chr21 16846713 16846734 -28060836 + AT_rich Low_complexity Low_complexity 1 21 0 195 139 0 0 chr21 16848185 16848221 -28059349 + (CA)n Simple_repeat Simple_repeat 1 36 0 30 45 0 0 chr21 16848252 16848296 -28059274 + AT_rich Low_complexity Low_complexity 1 44 0 2904 197 10 45 chr21 16848923 16849052 -28058518 + L1MA3 LINE L1 5569 5701 -604 2283 98 0 3 chr21 16849052 16849347 -28058223 + AluSq SINE Alu 4 297 -16 2904 197 10 45 chr21 16849347 16850005 -28057565 + L1MA3 LINE L1 5701 6305 0 438 323 49 18 chr21 16850355 16850433 -28057137 + MIR SINE MIR 3 77 -185 3418 184 50 13 chr21 16850433 16851129 -28056441 + MER72 LTR ERV1 1 722 0 438 323 49 18 chr21 16851129 16851276 -28056294 + MIR SINE MIR 77 235 -27 25 0 0 0 chr21 16852262 16852287 -28055283 + AT_rich Low_complexity Low_complexity 1 25 0 1640 196 10 16 chr21 16852358 16852669 -28054901 - AluJb SINE Alu -1 311 3 23 54 0 0 chr21 16852937 16852974 -28054596 + AT_rich Low_complexity Low_complexity 1 37 0 343 349 97 41 chr21 16853855 16854500 -28053070 + L2 LINE L2 2564 3313 0 37 0 0 0 chr21 16854855 16854892 -28052678 + AT_rich Low_complexity Low_complexity 1 37 0 563 64 0 0 chr21 16855487 16855565 -28052005 - AluJ/FRAM SINE Alu -11 301 224 315 273 45 105 chr21 16855667 16855942 -28051628 + MLT1J1 LTR MaLR 9 271 -175 842 199 0 13 chr21 16857502 16857658 -28049912 + FRAM SINE Alu 1 153 -23 576 307 73 23 chr21 16858109 16858451 -28049119 - L1ME3A LINE L1 -8 6556 6198 311 264 38 9 chr21 16858456 16858562 -28049008 - L1ME3A LINE L1 -406 6150 6042 240 318 82 35 chr21 16858729 16858899 -28048671 - L1ME3A LINE L1 -4658 2063 1886 397 316 123 57 chr21 16859056 16859506 -28048064 - L1MDa LINE L1 -4816 1724 1270 2050 148 83 42 chr21 16861169 16861603 -28045967 + LTR47A LTR ERVL 1 452 0 219 273 182 0 chr21 16861777 16861854 -28045716 + L2 LINE L2 2152 2242 -1072 2793 177 9 45 chr21 16862213 16862789 -28044781 - MER41D LTR ERV1 0 557 3 201 352 107 4 chr21 16863013 16863246 -28044324 - L2 LINE L2 -1114 2200 1944 258 241 0 23 chr21 16866495 16866582 -28040988 + (TTAAA)n Simple_repeat Simple_repeat 1 85 0 210 37 0 0 chr21 16867796 16867823 -28039747 + (TTG)n Simple_repeat Simple_repeat 1 27 0 2271 46 42 3 chr21 16868707 16868991 -28038579 + AluY SINE Alu 11 305 -6 1455 224 51 70 chr21 16870230 16870760 -28036810 - MLT2B1 LTR ERVL 0 520 1 1603 212 39 11 chr21 16871606 16871955 -28035615 - MLT1A1 LTR MaLR 0 365 5 2499 261 33 33 chr21 16872063 16872880 -28034690 - L1ME1 LINE L1 -41 6125 5309 2367 227 84 57 chr21 16872877 16873797 -28033773 + L1M4 LINE L1 3923 4867 -1279 * 5903 126 16 3 chr21 16873801 16874739 -28032831 - L1PA8A LINE L1 -1095 5051 4102 6275 89 9 3 chr21 16874740 16875775 -28031795 + L1PA8A LINE L1 5059 6104 -27 270 246 175 8 chr21 16875842 16875968 -28031602 + L1M4 LINE L1 4878 5024 -1122 355 291 25 77 chr21 16877007 16877203 -28030367 - MLT1J LTR MaLR -205 306 121 247 289 102 23 chr21 16877859 16877987 -28029583 - MLT1J LTR MaLR -391 158 21 1697 186 0 14 chr21 16878275 16878565 -28029005 + AluJb SINE Alu 1 286 -26 26 30 0 0 chr21 16878854 16878887 -28028683 + AT_rich Low_complexity Low_complexity 1 33 0 209 288 17 0 chr21 16878924 16878983 -28028587 + MIR SINE MIR 64 123 -139 206 298 0 0 chr21 16879026 16879083 -28028487 + MIR SINE MIR 196 252 -10 365 170 150 0 chr21 16879108 16879208 -28028362 - LTR50 LTR ERVL -2 793 679 2244 105 8 45 chr21 16879223 16879575 -28027995 - SVA Other Other -191 1195 857 34481 38 0 0 chr21 16879575 16886566 -28021004 - HERVK LTR ERVK -95 7148 162 8101 55 1 0 chr21 16886566 16887531 -28020039 - LTR5 LTR ERVK -3 966 1 26 30 0 0 chr21 16887612 16887645 -28019925 + AT_rich Low_complexity Low_complexity 1 33 0 209 288 17 0 chr21 16887682 16887741 -28019829 + MIR SINE MIR 64 123 -139 206 298 0 0 chr21 16887784 16887841 -28019729 + MIR SINE MIR 196 252 -10 865 230 158 20 chr21 16887866 16888462 -28019108 - LTR50 LTR ERVL -2 793 4 2120 111 16 13 chr21 16888531 16888838 -28018732 - AluSg SINE Alu -2 308 1 183 42 0 0 chr21 16888873 16888897 -28018673 + (TTCC)n Simple_repeat Simple_repeat 3 26 0 302 80 20 0 chr21 16890057 16890107 -28017463 + (GA)n Simple_repeat Simple_repeat 2 52 0 282 206 0 0 chr21 16890103 16890171 -28017399 + GA-rich Low_complexity Low_complexity 2 69 0 * 3348 117 2 34 chr21 16890523 16891060 -28016510 - L1PB2 LINE L1 -2 6149 5630 548 192 0 8 chr21 16891060 16891190 -28016380 + L1 LINE L1 5180 5308 -838 * 7637 179 30 22 chr21 16891183 16893072 -28014498 - L1PBb LINE L1 -2106 4097 2226 2116 111 3 3 chr21 16893072 16893370 -28014200 - AluY SINE Alu -13 298 1 7637 179 30 22 chr21 16893370 16895219 -28012351 - L1PBb LINE L1 -3977 2226 317 505 196 0 0 chr21 16895878 16895970 -28011600 - L1PBb LINE L1 -5421 783 692 243 0 0 0 chr21 16895970 16895997 -28011573 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 561 276 240 11 chr21 16896162 16896437 -28011133 + LTR16C LTR ERVL 97 434 -57 698 340 73 5 chr21 16897337 16897707 -28009863 + LTR16C LTR ERVL 97 491 0 225 333 93 0 chr21 16899108 16899183 -28008387 - L2 LINE L2 -46 3226 3145 1157 312 44 48 chr21 16900573 16901076 -28006494 + MER45C DNA AcHobo 3 503 -450 339 359 28 14 chr21 16901278 16901490 -28006080 - MIR SINE MIR 0 262 48 587 148 0 0 chr21 16903106 16903194 -28004376 + AluSp SINE Alu 132 219 -94 2377 41 0 7 chr21 16904125 16904417 -28003153 - AluY SINE Alu -21 290 1 845 328 34 7 chr21 16905732 16906025 -28001545 + LTR16A LTR ERVL 147 447 -3 273 119 0 0 chr21 16906384 16906426 -28001144 + (A)n Simple_repeat Simple_repeat 1 42 0 1945 311 81 59 chr21 16907739 16908985 -27998585 + L2 LINE L2 338 1610 -1704 372 368 116 18 chr21 16909561 16909898 -27997672 + MLT1K LTR MaLR 219 588 0 503 378 115 17 chr21 16910742 16911324 -27996246 + L3 LINE CR1 382 1020 -557 854 62 0 9 chr21 16911541 16911654 -27995916 - L1PA7 LINE L1 -5 6149 6038 1079 270 85 119 chr21 16912570 16914763 -27992807 - HAL1 LINE L1 -255 2252 133 4277 45 33 0 chr21 16914881 16915420 -27992150 + L1PA5 LINE L1 5598 6154 0 1723 105 0 123 chr21 16916289 16916622 -27990948 + AluSg1 SINE Alu 1 292 -17 198 0 0 0 chr21 16916710 16916732 -27990838 + (TTA)n Simple_repeat Simple_repeat 3 24 0 6436 67 8 0 chr21 16916732 16917940 -27989630 - L1PA7 LINE L1 -18 6136 4903 208 158 35 35 chr21 16918068 16918125 -27989445 + CT-rich Low_complexity Low_complexity 4 60 0 21 36 0 0 chr21 16918702 16918730 -27988840 + AT_rich Low_complexity Low_complexity 1 28 0 21 36 0 0 chr21 16919263 16919291 -27988279 + AT_rich Low_complexity Low_complexity 1 28 0 1434 193 10 53 chr21 16921102 16921403 -27986167 - AluJo SINE Alu -22 290 3 395 293 90 28 chr21 16921832 16922044 -27985526 - L2 LINE L2 0 3313 3089 225 132 15 29 chr21 16922095 16922163 -27985407 + (TTA)n Simple_repeat Simple_repeat 1 67 0 558 275 56 32 chr21 16922202 16922453 -27985117 - MIR SINE MIR -2 260 4 180 125 0 0 chr21 16922694 16922726 -27984844 + (CTTTG)n Simple_repeat Simple_repeat 3 34 0 1271 215 12 80 chr21 16923388 16923788 -27983782 + MLT1A2 LTR MaLR 1 373 -1 22 0 0 0 chr21 16924393 16924415 -27983155 + AT_rich Low_complexity Low_complexity 1 22 0 31 88 0 0 chr21 16925047 16925127 -27982443 + AT_rich Low_complexity Low_complexity 1 80 0 261 167 0 0 chr21 16927361 16927415 -27980155 + (TA)n Simple_repeat Simple_repeat 1 54 0 21 0 0 0 chr21 16927642 16927663 -27979907 + AT_rich Low_complexity Low_complexity 1 21 0 24 53 0 0 chr21 16927792 16927830 -27979740 + AT_rich Low_complexity Low_complexity 1 38 0 25 31 0 0 chr21 16928558 16928590 -27978980 + AT_rich Low_complexity Low_complexity 1 32 0 249 342 74 27 chr21 16928719 16928868 -27978702 + L2 LINE L2 3158 3313 0 681 207 0 7 chr21 16929554 16929689 -27977881 + MLT1A1 LTR MaLR 13 146 -219 627 237 0 0 chr21 16929689 16929828 -27977742 + L1PB4 LINE L1 6017 6155 -1 335 327 136 20 chr21 16929878 16930077 -27977493 - MIR SINE MIR -40 222 1 1306 201 24 54 chr21 16930339 16930588 -27976982 - MSTD LTR MaLR 0 396 156 1616 123 0 0 chr21 16930588 16930816 -27976754 + AluSg/x SINE Alu 85 312 0 1306 201 24 54 chr21 16930816 16930864 -27976706 - MSTD LTR MaLR -240 156 108 704 368 20 0 chr21 16931070 16931372 -27976198 + MLT1I LTR MaLR 92 399 -10 414 245 22 86 chr21 16931384 16931418 -27976152 + MLT2E LTR ERVL 10 45 -583 369 0 0 0 chr21 16931418 16931459 -27976111 + (CA)n Simple_repeat Simple_repeat 2 42 0 1621 194 0 0 chr21 16931461 16931749 -27975821 - AluJb SINE Alu -24 288 1 414 245 22 86 chr21 16931749 16931850 -27975720 + MLT2E LTR ERVL 46 139 -489 278 274 17 26 chr21 16932044 16932161 -27975409 + MLT2F LTR ERVL 546 661 -2 373 322 79 0 chr21 16932207 16932359 -27975211 - MIR SINE MIR -50 212 49 22 0 0 0 chr21 16934699 16934721 -27972849 + AT_rich Low_complexity Low_complexity 1 22 0 235 357 32 24 chr21 16936982 16937108 -27970462 + L2 LINE L2 2931 3057 -215 254 266 77 70 chr21 16937920 16938232 -27969338 + HAL1 LINE L1 1033 1346 -1161 21 0 0 0 chr21 16938234 16938255 -27969315 + AT_rich Low_complexity Low_complexity 1 21 0 1584 215 24 53 chr21 16939858 16940313 -27967257 - LTR47B LTR ERVL -1 442 1 213 246 0 64 chr21 16941333 16941443 -27966127 + A-rich Low_complexity Low_complexity 3 105 0 1084 320 71 19 chr21 16941875 16942340 -27965230 - LTR16C LTR ERVL 0 491 3 451 307 53 30 chr21 16942802 16943102 -27964468 - L1ME LINE L1 -561 5889 5583 26 64 0 0 chr21 16943106 16943153 -27964417 + AT_rich Low_complexity Low_complexity 1 47 0 326 304 196 61 chr21 16943426 16943851 -27963719 - HAL1 LINE L1 -660 1847 1326 1565 37 0 0 chr21 16943851 16944042 -27963528 - L1PA3 LINE L1 0 6155 5965 326 304 196 61 chr21 16944042 16944176 -27963394 - HAL1 LINE L1 -1181 1326 1212 3410 246 134 85 chr21 16944913 16947119 -27960451 - L1MCa LINE L1 -3212 3214 811 1923 168 60 3 chr21 16947119 16947500 -27960070 + MER57A LTR ERV1 1 403 0 3410 246 134 85 chr21 16947500 16948327 -27959243 - L1MCa LINE L1 -5615 811 26 198 0 0 0 chr21 16948373 16948395 -27959175 + (CAAA)n Simple_repeat Simple_repeat 2 23 0 23 54 0 0 chr21 16949691 16949728 -27957842 + AT_rich Low_complexity Low_complexity 1 37 0 991 288 116 74 chr21 16950110 16950626 -27956944 - MLT1G LTR MaLR -7 523 1 255 31 0 0 chr21 16950739 16950771 -27956799 + (TG)n Simple_repeat Simple_repeat 2 33 0 26 50 0 0 chr21 16951162 16951202 -27956368 + AT_rich Low_complexity Low_complexity 1 40 0 180 320 67 27 chr21 16951448 16951523 -27956047 - L2 LINE L2 -33 3239 3162 27 0 0 0 chr21 16951741 16951768 -27955802 + AT_rich Low_complexity Low_complexity 1 27 0 4513 234 67 7 chr21 16951791 16953011 -27954559 + L1M2c LINE L1 2086 3462 -3326 1957 154 18 6 chr21 16953016 16953348 -27954222 + THE1C LTR MaLR 3 338 -37 11813 184 30 0 chr21 16953358 16953705 -27953865 + L1PA14 LINE L1 2815 3150 -3011 438 20 0 0 chr21 16953705 16953756 -27953814 + (CA)n Simple_repeat Simple_repeat 2 52 0 11813 184 30 0 chr21 16953756 16956694 -27950876 + L1PA14 LINE L1 3150 6148 -13 21 0 0 0 chr21 16956695 16956716 -27950854 + AT_rich Low_complexity Low_complexity 1 21 0 375 277 121 6 chr21 16956824 16956990 -27950580 - L1ME3A LINE L1 -207 5963 5779 218 81 27 0 chr21 16956998 16957035 -27950535 + (CA)n Simple_repeat Simple_repeat 1 38 0 225 250 0 0 chr21 16957107 16957167 -27950403 + GA-rich Low_complexity Low_complexity 1 60 0 553 313 41 25 chr21 16957174 16957542 -27950028 - L1ME3A LINE L1 -533 5629 5256 547 357 101 2 chr21 16957560 16958005 -27949565 - L1ME3A LINE L1 -907 5239 4751 273 300 88 47 chr21 16958006 16958492 -27949078 - L1M4 LINE L1 -756 5390 4885 633 321 55 21 chr21 16959327 16960087 -27947483 - L1M4 LINE L1 -2923 3223 2438 * 1718 269 60 40 chr21 16960058 16960310 -27947260 - L1ME1 LINE L1 -5 6161 5916 2175 203 5 7 chr21 16960310 16960728 -27946842 - MER47B DNA MER2_type -1 417 1 1718 269 60 40 chr21 16960728 16961126 -27946444 - L1ME1 LINE L1 -250 5916 5498 205 178 0 22 chr21 16961463 16961508 -27946062 + MIR SINE MIR 217 260 -2 252 323 82 32 chr21 16962027 16962185 -27945385 + MIR SINE MIR 13 178 -84 849 249 61 97 chr21 16962263 16962822 -27944748 + MER34 LTR ERV1 1 539 -3 707 173 154 0 chr21 16963081 16963237 -27944333 - MLT1D LTR MaLR 0 505 326 2013 105 16 4 chr21 16963269 16963727 -27943843 - MER4A LTR ERV1 -2 662 170 299 125 0 0 chr21 16963733 16963781 -27943789 - MER4A LTR ERV1 -616 48 1 452 218 62 87 chr21 16963782 16964032 -27943538 - MLT1D LTR MaLR -198 269 19 2115 105 7 0 chr21 16965239 16965525 -27942045 - AluSg SINE Alu -11 299 12 258 388 18 24 chr21 16965581 16965751 -27941819 + MIR3 SINE MIR 28 196 -12 535 14 14 14 chr21 16966394 16966467 -27941103 + (TCTA)n Simple_repeat Simple_repeat 3 75 0 22 0 0 0 chr21 16966537 16966559 -27941011 + AT_rich Low_complexity Low_complexity 1 22 0 384 252 94 31 chr21 16967031 16967190 -27940380 - MIR SINE MIR -8 254 86 325 171 122 0 chr21 16967455 16967537 -27940033 + MER58B DNA MER1_type 39 130 -211 995 243 14 0 chr21 16968030 16968252 -27939318 + MER58B DNA MER1_type 116 340 -1 841 241 0 0 chr21 16968634 16968800 -27938770 + FRAM SINE Alu 1 166 0 21 104 0 0 chr21 16969766 16969843 -27937727 + AT_rich Low_complexity Low_complexity 1 77 0 972 201 50 39 chr21 16970074 16970203 -27937367 + MSTD LTR MaLR 23 149 -247 2067 131 3 0 chr21 16970203 16970508 -27937062 + AluSx SINE Alu 1 306 -6 972 201 50 39 chr21 16970508 16970705 -27936865 + MSTD LTR MaLR 149 396 0 266 325 50 25 chr21 16971636 16971796 -27935774 - MIR SINE MIR -12 250 87 185 327 39 29 chr21 16971939 16972043 -27935527 + L3 LINE CR1 849 953 -624 354 343 62 72 chr21 16972095 16972245 -27935325 + L3 LINE CR1 970 1120 -457 2155 114 0 19 chr21 16972245 16972560 -27935010 + AluSg SINE Alu 1 309 -1 354 343 62 72 chr21 16972560 16972782 -27934788 + L3 LINE CR1 1120 1338 -239 26 30 0 0 chr21 16973510 16973543 -27934027 + AT_rich Low_complexity Low_complexity 1 33 0 21 0 0 0 chr21 16973862 16973883 -27933687 + AT_rich Low_complexity Low_complexity 1 21 0 761 148 35 9 chr21 16974702 16974862 -27932708 - L1PA16 LINE L1 -439 5726 5555 * 1770 169 73 5 chr21 16974849 16975253 -27932317 + L1PA16 LINE L1 5700 6166 0 21 0 0 0 chr21 16975287 16975308 -27932262 + AT_rich Low_complexity Low_complexity 1 21 0 2432 81 0 3 chr21 16975308 16975617 -27931953 - AluY SINE Alu -3 308 1 1941 255 65 34 chr21 16977024 16977780 -27929790 - L1ME1 LINE L1 -5 6230 5452 343 262 0 10 chr21 16977760 16977863 -27929707 - L1ME1 LINE L1 -6259 137 36 * 209 135 27 0 chr21 16977888 16977925 -27929645 + (TAAA)n Simple_repeat Simple_repeat 2 39 0 252 314 128 0 chr21 16978246 16978348 -27929222 + L2 LINE L2 3199 3313 0 21 57 0 0 chr21 16978385 16978420 -27929150 + AT_rich Low_complexity Low_complexity 1 35 0 23 78 0 0 chr21 16978682 16978733 -27928837 + AT_rich Low_complexity Low_complexity 1 51 0 327 79 13 158 chr21 16979892 16979968 -27927602 + MER4E LTR ERV1 1 65 -545 186 43 0 0 chr21 16980060 16980083 -27927487 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 2858 115 24 12 chr21 16980100 16980639 -27926931 + MER4E LTR ERV1 56 766 0 3775 241 21 47 chr21 16980898 16981922 -27925648 - MSTD-int LTR MaLR -736 999 2 1366 221 33 40 chr21 16981924 16982323 -27925247 - MSTD LTR MaLR 0 396 1 282 277 0 12 chr21 16982334 16982417 -27925153 - MLT1E2 LTR MaLR -340 286 205 2488 54 0 0 chr21 16982988 16983285 -27924285 - AluY SINE Alu -10 301 5 21 0 0 0 chr21 16986378 16986399 -27921171 + AT_rich Low_complexity Low_complexity 1 21 0 451 329 101 14 chr21 16986571 16986790 -27920780 + MLT1J LTR MaLR 96 333 -178 374 271 138 41 chr21 16986790 16987130 -27920440 + L1M4 LINE L1 4446 4818 -1328 2470 61 0 6 chr21 16987177 16987490 -27920080 + AluY SINE Alu 1 311 0 435 38 0 0 chr21 16987993 16988046 -27919524 + (TTA)n Simple_repeat Simple_repeat 2 54 0 2527 213 29 13 chr21 16988053 16988574 -27918996 + LTR31 LTR ERV1 75 603 -16 1605 178 110 10 chr21 16988586 16988985 -27918585 + L1MA3 LINE L1 3323 3761 -2385 1082 108 7 0 chr21 16988986 16989134 -27918436 - AluSq/x SINE Alu -164 149 1 6543 151 18 10 chr21 16989134 16991092 -27916478 + L1MA3 LINE L1 4323 6295 -10 23 0 0 0 chr21 16991396 16991419 -27916151 + AT_rich Low_complexity Low_complexity 1 23 0 517 91 0 0 chr21 16991713 16991790 -27915780 - L1MA1 LINE L1 -2 6300 6224 300 232 50 61 chr21 16992755 16992854 -27914716 - L1MC4 LINE L1 -1332 6710 6613 204 167 24 0 chr21 16992860 16992902 -27914668 + (TA)n Simple_repeat Simple_repeat 1 43 0 1124 281 60 50 chr21 16993531 16994086 -27913484 + L1MEc LINE L1 39 598 -5798 888 209 5 24 chr21 16994090 16994296 -27913274 + L1MD3 LINE L1 7778 7979 -16 411 290 16 88 chr21 16994288 16994668 -27912902 + L1ME3A LINE L1 5324 5676 -494 * 343 318 46 29 chr21 16994807 16994980 -27912590 + L1ME3A LINE L1 5965 6140 -30 317 284 0 0 chr21 16995656 16995744 -27911826 - MER69 DNA AcHobo 0 2526 2439 330 250 157 0 chr21 16995753 16995861 -27911709 - MER69 DNA AcHobo -1094 132 8 2121 317 50 55 chr21 16999778 17000813 -27906757 - L2 LINE L2 -1007 2307 1278 2344 72 0 25 chr21 17000813 17001132 -27906438 - AluY SINE Alu 0 311 1 2121 317 50 55 chr21 17001132 17001286 -27906284 - L2 LINE L2 -2036 1278 1125 1377 171 212 20 chr21 17001502 17001718 -27905852 - MLT1C LTR MaLR 0 467 294 222 37 0 0 chr21 17001718 17001745 -27905825 + (TG)n Simple_repeat Simple_repeat 2 28 0 1377 171 212 20 chr21 17001745 17001920 -27905650 - MLT1C LTR MaLR -173 294 1 432 401 18 9 chr21 17002186 17002520 -27905050 + L1MEc LINE L1 43 379 -6017 1347 193 19 57 chr21 17002654 17003011 -27904559 + AluJb SINE Alu 5 349 0 315 317 68 9 chr21 17003018 17003239 -27904331 + L1MEc LINE L1 1538 1771 -4625 2273 264 52 4 chr21 17003500 17004057 -27903513 - MER45B DNA AcHobo -455 585 2 1239 286 20 35 chr21 17004076 17004313 -27903257 + L1M4 LINE L1 4059 4298 -1848 507 117 13 0 chr21 17004313 17004390 -27903180 - MADE1 DNA Mariner -2 78 1 1239 286 20 35 chr21 17004390 17004809 -27902761 + L1M4 LINE L1 4298 4910 -1236 1825 146 34 71 chr21 17005062 17005440 -27902130 - THE1B LTR MaLR 0 364 1 886 226 20 15 chr21 17006732 17006936 -27900634 + MLT2C2 LTR ERVL 1 205 -259 1819 221 69 13 chr21 17007032 17007484 -27900086 + ERVL LTR ERVL 761 1237 -4527 605 164 27 68 chr21 17007493 17007639 -27899931 - ERVL LTR ERVL -4027 1737 1598 1954 209 78 7 chr21 17007640 17008061 -27899509 + ERVL LTR ERVL 1719 2169 -3595 1856 202 9 3 chr21 17008056 17008402 -27899168 + ERVL LTR ERVL 2368 2715 -3049 * 319 243 0 0 chr21 17008405 17008475 -27899095 + ERVL LTR ERVL 2646 2715 -3049 336 231 0 0 chr21 17008478 17008543 -27899027 + ERVL LTR ERVL 2646 2710 -3054 295 258 0 0 chr21 17008555 17008621 -27898949 + ERVL LTR ERVL 2650 2715 -3049 339 246 0 0 chr21 17008625 17008694 -27898876 + ERVL LTR ERVL 2647 2715 -3049 337 243 0 0 chr21 17008770 17008840 -27898730 + ERVL LTR ERVL 2646 2715 -3049 347 243 0 0 chr21 17008843 17008913 -27898657 + ERVL LTR ERVL 2646 2715 -3049 324 261 0 0 chr21 17008917 17008986 -27898584 + ERVL LTR ERVL 2647 2715 -3049 371 214 0 0 chr21 17008989 17009059 -27898511 + ERVL LTR ERVL 2646 2715 -3049 3168 63 65 0 chr21 17009075 17009519 -27898051 - L1P LINE L1 -1460 4686 4214 1944 116 50 47 chr21 17009999 17010041 -27897529 - THE1B LTR MaLR 0 364 324 1934 125 6 41 chr21 17010041 17010361 -27897209 + AluSg SINE Alu 1 309 -1 1944 116 50 47 chr21 17010361 17010681 -27896889 - THE1B LTR MaLR -40 324 1 11203 108 6 7 chr21 17010681 17012262 -27895308 - THE1B-int LTR MaLR 0 1580 1 1852 113 96 38 chr21 17012262 17012606 -27894964 - THE1B LTR MaLR 0 364 1 411 348 67 42 chr21 17012918 17013320 -27894250 - L1ME3A LINE L1 -286 5884 5473 3787 153 68 9 chr21 17013528 17013753 -27893817 + L1MA9 LINE L1 5531 5741 -571 288 0 0 0 chr21 17013753 17013785 -27893785 + (CA)n Simple_repeat Simple_repeat 1 32 0 3787 153 68 9 chr21 17013785 17014293 -27893277 + L1MA9 LINE L1 5741 6307 -5 1229 154 14 36 chr21 17014372 17014389 -27893181 - AluJb SINE Alu -13 299 283 207 0 0 0 chr21 17014389 17014412 -27893158 + (TTTAA)n Simple_repeat Simple_repeat 3 25 0 1229 154 14 36 chr21 17014412 17014615 -27892955 - AluJb SINE Alu -29 283 84 334 271 110 55 chr21 17014670 17014925 -27892645 + L1ME2 LINE L1 4233 4501 -1645 244 239 45 0 chr21 17015058 17015146 -27892424 + (TA)n Simple_repeat Simple_repeat 2 93 0 266 245 19 0 chr21 17015148 17015201 -27892369 + Tigger5 DNA MER2_type 2 55 -2268 * 406 178 14 14 chr21 17015171 17015244 -27892326 + Tigger5 DNA MER2_type 2251 2323 0 2281 260 70 27 chr21 17015265 17016063 -27891507 + L1ME2 LINE L1 4984 5847 -317 180 0 0 0 chr21 17016063 17016083 -27891487 + (TAAA)n Simple_repeat Simple_repeat 2 21 0 2281 260 70 27 chr21 17016083 17016396 -27891174 + L1ME2 LINE L1 5847 6145 -19 820 172 25 0 chr21 17016662 17016819 -27890751 + MER47A DNA MER2_type 61 221 -145 23 0 0 0 chr21 17016913 17016936 -27890634 + AT_rich Low_complexity Low_complexity 1 23 0 1787 163 28 9 chr21 17017869 17018189 -27889381 + MER47A DNA MER2_type 2 327 -39 2951 162 16 16 chr21 17018192 17018704 -27888866 + MSTA-int LTR MaLR 1063 1574 -6 2040 139 132 5 chr21 17018709 17019089 -27888481 + MSTA LTR MaLR 1 428 0 256 200 0 0 chr21 17019096 17019146 -27888424 - MER20 DNA MER1_type -169 50 1 921 264 110 36 chr21 17019562 17019899 -27887671 - MLT1A1 LTR MaLR 0 365 4 369 239 141 36 chr21 17020244 17020431 -27887139 + L1ME2 LINE L1 5919 6130 -34 42 48 0 0 chr21 17020445 17020508 -27887062 + AT_rich Low_complexity Low_complexity 1 63 0 22 70 0 0 chr21 17020700 17020743 -27886827 + AT_rich Low_complexity Low_complexity 1 43 0 434 275 46 60 chr21 17021437 17021682 -27885888 + L1MD3 LINE L1 7337 7670 -325 507 246 103 10 chr21 17021697 17021892 -27885678 + L1MC4 LINE L1 7685 7897 -145 1914 173 21 0 chr21 17022047 17022383 -27885187 + MER2 DNA MER2_type 2 344 0 325 314 127 20 chr21 17022387 17022598 -27884972 + L1ME LINE L1 4068 4312 -1834 431 133 40 0 chr21 17022598 17022673 -27884897 - MADE1 DNA Mariner -2 78 1 325 314 127 20 chr21 17022673 17022713 -27884857 + L1ME LINE L1 4312 4346 -1800 45 87 0 0 chr21 17022749 17022864 -27884706 + AT_rich Low_complexity Low_complexity 1 115 0 1111 223 59 74 chr21 17022901 17023238 -27884332 + MLT2D LTR ERVL 83 414 0 331 244 101 29 chr21 17023241 17023450 -27884120 + L1ME LINE L1 4385 4608 -1538 237 315 0 0 chr21 17023583 17023675 -27883895 + L1ME LINE L1 4740 4831 -1315 445 305 97 18 chr21 17024030 17024379 -27883191 + L1ME LINE L1 5344 5643 -519 1808 150 85 21 chr21 17024379 17024719 -27882851 + THE1B LTR MaLR 1 362 -2 1040 184 0 39 chr21 17024895 17025101 -27882469 + Tigger2a DNA MER2_type 1 198 -236 239 275 9 0 chr21 17025103 17025212 -27882358 + CT-rich Low_complexity Low_complexity 1 110 0 1839 143 41 0 chr21 17025212 17025506 -27882064 - AluSx SINE Alu -6 306 1 1041 141 218 0 chr21 17025506 17025712 -27881858 + Tigger2a DNA MER2_type 183 433 -1 21 0 0 0 chr21 17026872 17026893 -27880677 + AT_rich Low_complexity Low_complexity 1 21 0 29 84 0 0 chr21 17026941 17027012 -27880558 + AT_rich Low_complexity Low_complexity 1 71 0 306 268 142 24 chr21 17027076 17027203 -27880367 + MER20 DNA MER1_type 37 178 -41 523 290 139 25 chr21 17027570 17027815 -27879755 + L2 LINE L2 2023 2295 -1019 289 333 39 46 chr21 17027892 17028045 -27879525 + L2 LINE L2 2301 2452 -862 991 145 0 10 chr21 17028200 17028393 -27879177 + L1MA6 LINE L1 6110 6300 0 339 316 110 59 chr21 17028417 17028943 -27878627 + L1M4 LINE L1 3731 4283 -1863 280 323 88 26 chr21 17029088 17029590 -27877980 + L1M4 LINE L1 4473 5005 -1141 1771 150 82 20 chr21 17029700 17030053 -27877517 + THE1C LTR MaLR 1 375 0 9582 118 36 46 chr21 17030053 17031649 -27875921 + THE1C-int LTR MaLR 1 1580 0 1945 132 76 20 chr21 17031649 17032004 -27875566 + THE1C LTR MaLR 1 375 0 2005 131 0 7 chr21 17032324 17032614 -27874956 + AluSc SINE Alu 1 288 -21 236 190 0 17 chr21 17033021 17033079 -27874491 + L1MC4 LINE L1 6647 6703 -1339 253 190 38 0 chr21 17033283 17033362 -27874208 + CT-rich Low_complexity Low_complexity 2 83 0 264 130 0 0 chr21 17034535 17034581 -27872989 + (TG)n Simple_repeat Simple_repeat 1 46 0 246 136 0 0 chr21 17034900 17034944 -27872626 + (GGAA)n Simple_repeat Simple_repeat 2 45 0 1519 237 17 11 chr21 17035543 17035902 -27871668 - MLT1A1 LTR MaLR 0 365 5 383 211 39 0 chr21 17037292 17037396 -27870174 - Charlie5 DNA MER1_type 0 2624 2517 1711 214 88 38 chr21 17037454 17037931 -27869639 + MER21B LTR ERV1 147 647 -216 225 261 54 43 chr21 17037995 17038087 -27869483 + MER21B LTR ERV1 646 738 -125 22 35 0 0 chr21 17038898 17038927 -27868643 + AT_rich Low_complexity Low_complexity 1 29 0 21 57 0 0 chr21 17039021 17039056 -27868514 + AT_rich Low_complexity Low_complexity 1 35 0 3476 155 43 41 chr21 17039723 17040447 -27867123 + LTR8A LTR ERV1 3 727 0 318 269 97 30 chr21 17040716 17040850 -27866720 + MIR SINE MIR 110 252 -10 189 74 0 0 chr21 17040851 17040878 -27866692 + (TTA)n Simple_repeat Simple_repeat 1 27 0 663 263 27 49 chr21 17042339 17042563 -27865007 + MER20 DNA MER1_type 1 219 0 3126 253 104 41 chr21 17042639 17043530 -27864040 + L1MA4A LINE L1 1 991 -6218 2332 32 0 0 chr21 17043530 17043807 -27863763 + L1PA4 LINE L1 5876 6153 -2 3126 253 104 41 chr21 17043807 17044135 -27863435 + L1MA4A LINE L1 991 1297 -5912 * 10965 179 26 48 chr21 17044131 17044560 -27863010 + L1MA4A LINE L1 3796 4233 -3132 547 191 118 0 chr21 17044560 17044670 -27862900 - FLAM_C SINE Alu -10 123 1 10965 179 26 48 chr21 17044670 17047647 -27859923 + L1MA4A LINE L1 4233 7120 -245 284 271 159 9 chr21 17047885 17047992 -27859578 + L2 LINE L2 3191 3313 0 21 57 0 0 chr21 17049058 17049093 -27858477 + AT_rich Low_complexity Low_complexity 1 35 0 28 48 0 0 chr21 17049549 17049591 -27857979 + AT_rich Low_complexity Low_complexity 1 42 0 3188 111 43 11 chr21 17049760 17050294 -27857276 - L1MA2 LINE L1 0 6304 5754 2016 138 45 17 chr21 17050296 17050650 -27856920 + THE1B LTR MaLR 1 364 0 10777 109 4 1 chr21 17050653 17052136 -27855434 + THE1B-int LTR MaLR 94 1580 0 1815 186 49 9 chr21 17052136 17052486 -27855084 + THE1B LTR MaLR 1 364 0 5990 166 33 15 chr21 17052486 17054148 -27853422 - L1MA2 LINE L1 -567 5737 4049 1406 195 19 39 chr21 17054328 17054636 -27852934 + AluJb SINE Alu 11 312 0 27 0 0 0 chr21 17055234 17055261 -27852309 + AT_rich Low_complexity Low_complexity 1 27 0 23 0 0 0 chr21 17056482 17056505 -27851065 + AT_rich Low_complexity Low_complexity 1 23 0 289 308 48 10 chr21 17056618 17056722 -27850848 - MER94 DNA DNA -24 110 3 357 24 0 0 chr21 17059925 17059967 -27847603 + (CA)n Simple_repeat Simple_repeat 2 43 0 333 157 57 0 chr21 17060743 17060813 -27846757 - MER53 DNA DNA 0 189 116 * 335 115 141 0 chr21 17060753 17060831 -27846739 + MER53 DNA DNA 20 108 -81 296 357 177 20 chr21 17062962 17063701 -27843869 + L2 LINE L2 1758 2612 -702 254 236 32 0 chr21 17063910 17064033 -27843537 + (TA)n Simple_repeat Simple_repeat 2 128 0 24 32 0 0 chr21 17064061 17064092 -27843478 + AT_rich Low_complexity Low_complexity 1 31 0 203 167 62 7 chr21 17064138 17064282 -27843288 + (TA)n Simple_repeat Simple_repeat 1 152 0 286 129 32 0 chr21 17064404 17064466 -27843104 + (TA)n Simple_repeat Simple_repeat 2 65 0 300 303 0 37 chr21 17064470 17064579 -27842991 - L1MC4 LINE L1 -1339 6703 6599 339 171 0 0 chr21 17064582 17064658 -27842912 + (TA)n Simple_repeat Simple_repeat 2 77 0 632 289 81 49 chr21 17065475 17066144 -27841426 - L1ME3A LINE L1 -224 5946 5257 2291 114 0 3 chr21 17066257 17066564 -27841006 - AluSx SINE Alu -6 306 1 31 26 0 0 chr21 17066596 17066634 -27840936 + AT_rich Low_complexity Low_complexity 1 38 0 1654 206 8 48 chr21 17066634 17067007 -27840563 - MER52A LTR ERV1 -1397 358 1 1149 212 30 8 chr21 17067091 17067355 -27840215 + L1MD3 LINE L1 7574 7843 -152 809 212 26 37 chr21 17067359 17067635 -27839935 - MER4C LTR ERV1 0 465 276 597 211 197 23 chr21 17067759 17067977 -27839593 - MER4C LTR ERV1 -209 256 1 6495 168 47 20 chr21 17068040 17069207 -27838363 + MER52A LTR ERV1 557 1755 0 1784 147 184 20 chr21 17069342 17069689 -27837881 - MER4A LTR ERV1 0 664 261 648 121 0 10 chr21 17069689 17069788 -27837782 - MER4A LTR ERV1 -566 98 1 2587 46 0 0 chr21 17069797 17070103 -27837467 - AluY SINE Alu -5 306 1 262 311 38 15 chr21 17070384 17070516 -27837054 - L1MEd LINE L1 -5812 307 173 22 35 0 0 chr21 17070562 17070591 -27836979 + AT_rich Low_complexity Low_complexity 1 29 0 551 245 0 0 chr21 17070859 17070965 -27836605 + MER46B DNA MER2_type 1 106 -255 5983 67 13 13 chr21 17070967 17071745 -27835825 - LTR17 LTR ERV1 -2 778 1 2323 68 0 0 chr21 17071745 17072037 -27835533 - HERV17 LTR ERV1 0 8626 8335 299 51 0 0 chr21 17072027 17072066 -27835504 - HERV17 LTR ERV1 -1078 7548 7510 * 47722 60 11 2 chr21 17072059 17078028 -27829542 - HERV17 LTR ERV1 -2607 6019 1 5782 79 18 13 chr21 17078028 17078772 -27828798 - LTR17 LTR ERV1 -32 748 1 1237 165 89 0 chr21 17078772 17079008 -27828562 + MER46B DNA MER2_type 103 234 -2 25 0 0 0 chr21 17079311 17079336 -27828234 + AT_rich Low_complexity Low_complexity 1 25 0 1493 186 32 32 chr21 17079890 17080175 -27827395 + AluJo SINE Alu 4 288 -24 23 33 0 0 chr21 17080217 17080247 -27827323 + AT_rich Low_complexity Low_complexity 1 30 0 970 189 77 20 chr21 17080450 17080786 -27826784 - MSTD LTR MaLR 0 396 1 5410 275 47 28 chr21 17080791 17082488 -27825082 - MSTD-int LTR MaLR -6 1729 2 878 277 25 16 chr21 17082490 17082825 -27824745 - MSTD LTR MaLR 0 396 2 3760 114 35 122 chr21 17082870 17083730 -27823840 + LTR1 LTR ERV1 1 785 0 1714 180 41 39 chr21 17085402 17085791 -27821779 - MLT1B LTR MaLR 0 390 1 608 236 52 47 chr21 17086376 17086567 -27821003 + MIR SINE MIR 60 251 -11 1390 214 83 32 chr21 17087148 17087555 -27820015 + MSTC LTR MaLR 1 428 0 23 0 0 0 chr21 17089327 17089350 -27818220 + AT_rich Low_complexity Low_complexity 1 23 0 22 0 0 0 chr21 17089632 17089654 -27817916 + AT_rich Low_complexity Low_complexity 1 22 0 34 24 0 0 chr21 17091506 17091547 -27816023 + AT_rich Low_complexity Low_complexity 1 41 0 2724 205 16 4 chr21 17091685 17092201 -27815369 + Tigger7 DNA MER2_type 4 525 -208 559 139 58 0 chr21 17092195 17092281 -27815289 + Tigger7 DNA MER2_type 2396 2486 -1 * 2369 205 90 14 chr21 17092783 17093359 -27814211 + LTR28 LTR ERV1 1 620 -400 4263 233 84 28 chr21 17094315 17095217 -27812353 - Charlie1a DNA MER1_type -1320 1441 435 2076 189 153 10 chr21 17095217 17095708 -27811862 - MER68 LTR ERV1 -1 561 1 4263 233 84 28 chr21 17095708 17096169 -27811401 - Charlie1a DNA MER1_type -2326 435 1 1840 125 0 0 chr21 17096531 17096787 -27810783 - AluSx SINE Alu -17 295 40 187 297 41 128 chr21 17096996 17097505 -27810065 + L2 LINE L2 2486 2950 -364 248 354 23 23 chr21 17097700 17097830 -27809740 + L2 LINE L2 3134 3263 -9 494 221 8 0 chr21 17097843 17097965 -27809605 + L1M4 LINE L1 4745 4867 -1279 1684 127 52 0 chr21 17097979 17098231 -27809339 + MER41C LTR ERV1 1 265 -289 1975 119 0 0 chr21 17098233 17098501 -27809069 + AluSx SINE Alu 1 268 -44 628 93 0 0 chr21 17098501 17098587 -27808983 + AluSg/x SINE Alu 219 304 -8 1497 156 41 0 chr21 17098589 17098858 -27808712 + MER41C LTR ERV1 273 552 -2 341 182 0 26 chr21 17098869 17098946 -27808624 - THE1A LTR MaLR -97 258 184 201 161 36 18 chr21 17099079 17099135 -27808435 + (TA)n Simple_repeat Simple_repeat 2 58 0 1952 209 21 5 chr21 17099135 17099560 -27808010 + Tigger2a DNA MER2_type 2 433 -1 21 57 0 0 chr21 17101362 17101397 -27806173 + AT_rich Low_complexity Low_complexity 1 35 0 2439 119 16 3 chr21 17101823 17102193 -27805377 - THE1C LTR MaLR 0 375 1 1543 149 38 101 chr21 17103660 17103933 -27803637 - L1MA8 LINE L1 -3 6288 6048 1826 165 10 0 chr21 17103933 17104224 -27803346 + AluSx SINE Alu 1 294 -18 1543 149 38 101 chr21 17104224 17104367 -27803203 - L1MA8 LINE L1 -243 6048 5898 648 282 56 30 chr21 17104577 17104811 -27802759 + MIR SINE MIR 20 259 -3 311 388 104 13 chr21 17105088 17105472 -27802098 + L2 LINE L2 2440 2858 -456 200 299 103 0 chr21 17105765 17105852 -27801718 + L2 LINE L2 3208 3303 -10 4375 36 0 1 chr21 17106414 17107033 -27800537 - L1PA4 LINE L1 -713 5442 4869 5882 37 1 0 chr21 17107033 17107733 -27799837 + L1PA4 LINE L1 5447 6155 0 297 0 0 0 chr21 17108642 17108675 -27798895 + (CA)n Simple_repeat Simple_repeat 2 34 0 421 305 44 22 chr21 17108950 17109176 -27798394 - L1ME3A LINE L1 -315 5855 5625 514 104 13 0 chr21 17109281 17109358 -27798212 + MADE1 DNA Mariner 1 78 -2 2411 105 19 11 chr21 17109377 17109738 -27797832 + THE1C LTR MaLR 1 364 -11 23 0 0 0 chr21 17109874 17109897 -27797673 + AT_rich Low_complexity Low_complexity 1 23 0 781 72 13 2 chr21 17110020 17110257 -27797313 - AluY SINE Alu -13 298 1 21 0 0 0 chr21 17110264 17110285 -27797285 + AT_rich Low_complexity Low_complexity 1 21 0 342 290 119 44 chr21 17110383 17110745 -27796825 - L1ME3A LINE L1 -1006 5140 4752 334 252 50 131 chr21 17110769 17111090 -27796480 - L1ME3A LINE L1 -1364 4782 4488 6298 150 49 12 chr21 17111170 17111763 -27795807 + Tigger3b DNA MER2_type 40 610 -2418 2241 108 0 3 chr21 17111763 17112070 -27795500 - AluSc SINE Alu -3 306 1 6298 150 49 12 chr21 17112070 17112625 -27794945 + Tigger3b DNA MER2_type 610 1230 -1 392 300 73 66 chr21 17112651 17114009 -27793561 - L1ME3A LINE L1 -1777 4369 3003 2025 165 88 0 chr21 17114061 17114425 -27793145 + MER57A LTR ERV1 8 403 0 298 368 138 41 chr21 17114438 17114716 -27792854 - L2 LINE L2 -484 2830 2580 1897 138 0 0 chr21 17114716 17114984 -27792586 + AluSx SINE Alu 1 268 -44 378 42 0 0 chr21 17114984 17115032 -27792538 + (CA)n Simple_repeat Simple_repeat 1 48 0 298 368 138 41 chr21 17115032 17115516 -27792054 - L2 LINE L2 -734 2580 2144 2094 141 22 33 chr21 17115516 17115884 -27791686 + THE1B LTR MaLR 1 364 0 11331 93 19 3 chr21 17115884 17117438 -27790132 + THE1B-int LTR MaLR 1 1580 0 2135 114 24 38 chr21 17117438 17117807 -27789763 + THE1B LTR MaLR 1 364 0 298 368 138 41 chr21 17117807 17118592 -27788978 - L2 LINE L2 -1169 2145 1128 2347 46 7 0 chr21 17119092 17119375 -27788195 - AluSc SINE Alu -9 300 16 2203 121 0 9 chr21 17119980 17120295 -27787275 - AluSx SINE Alu 0 312 1 21 0 0 0 chr21 17121171 17121192 -27786378 + AT_rich Low_complexity Low_complexity 1 21 0 23 0 0 0 chr21 17121603 17121626 -27785944 + AT_rich Low_complexity Low_complexity 1 23 0 2672 189 9 2 chr21 17121633 17122307 -27785263 - MER72 LTR ERV1 -7 715 5 3893 57 14 2 chr21 17122384 17122891 -27784679 + LTR10D LTR ERV1 1 513 0 821 310 56 14 chr21 17123331 17123763 -27783807 + HAL1 LINE L1 1391 1840 -667 2638 165 9 0 chr21 17123816 17124271 -27783299 + L1PB3 LINE L1 5689 6147 -7 25 31 0 0 chr21 17124644 17124676 -27782894 + AT_rich Low_complexity Low_complexity 1 32 0 638 320 225 32 chr21 17125055 17125605 -27781965 + L2 LINE L2 1612 2054 -1260 249 108 0 0 chr21 17125605 17125642 -27781928 + (CA)n Simple_repeat Simple_repeat 2 38 0 638 320 225 32 chr21 17125642 17125965 -27781605 + L2 LINE L2 2054 2654 -660 2396 171 5 3 chr21 17126272 17126657 -27780913 - MSTA LTR MaLR 0 428 43 6557 86 5 2 chr21 17126657 17127522 -27780048 + HERVL-A2 LTR ERVL 4788 5654 0 3190 106 11 9 chr21 17127522 17127974 -27779596 + MLT2A2 LTR ERVL 1 453 0 5997 212 15 10 chr21 17127975 17129178 -27778392 - MSTA-int LTR MaLR -442 1209 1 2240 155 2 60 chr21 17129180 17129632 -27777938 - MSTA LTR MaLR -2 426 1 1427 291 58 81 chr21 17129673 17130547 -27777023 - L2 LINE L2 -517 2797 1944 1361 151 51 118 chr21 17130627 17130946 -27776624 + THE1C LTR MaLR 29 321 -54 1457 173 68 0 chr21 17130946 17131224 -27776346 - AluSx SINE Alu -2 310 14 1361 151 51 118 chr21 17131224 17131276 -27776294 + THE1C LTR MaLR 321 375 0 779 299 25 66 chr21 17131282 17131600 -27775970 - L2 LINE L2 -1529 1785 1481 761 306 186 14 chr21 17131738 17132187 -27775383 + L2 LINE L2 2789 3313 0 312 297 112 32 chr21 17132245 17132494 -27775076 + HAL1 LINE L1 2231 2499 -8 339 294 91 28 chr21 17132905 17133048 -27774522 + MIR SINE MIR 95 246 -16 21 0 0 0 chr21 17133063 17133084 -27774486 + AT_rich Low_complexity Low_complexity 1 21 0 350 173 13 0 chr21 17133414 17133489 -27774081 + (TG)n Simple_repeat Simple_repeat 1 76 0 378 88 0 18 chr21 17133967 17134024 -27773546 + MSTA LTR MaLR 5 60 -368 264 265 95 41 chr21 17135575 17135722 -27771848 + MER103 DNA DNA 11 165 -1 21 0 0 0 chr21 17137184 17137205 -27770365 + AT_rich Low_complexity Low_complexity 1 21 0 679 308 97 27 chr21 17138319 17138650 -27768920 - LTR16A LTR ERVL -2 448 95 21 26 0 26 chr21 17138736 17138751 -27768819 + AT_rich Low_complexity Low_complexity 1 15 -23 2477 65 0 0 chr21 17138751 17139060 -27768510 - AluY SINE Alu -2 309 1 21 26 0 26 chr21 17139060 17139083 -27768487 + AT_rich Low_complexity Low_complexity 15 38 0 22 0 0 0 chr21 17139106 17139128 -27768442 + AT_rich Low_complexity Low_complexity 1 22 0 6781 71 3 5 chr21 17139129 17140811 -27766759 - L1PA8 LINE L1 -8 6164 4481 533 74 0 37 chr21 17140813 17140894 -27766676 + L1PA8 LINE L1 4388 4465 -1681 233 139 0 0 chr21 17141264 17141300 -27766270 + U2 snRNA snRNA 1 36 -152 245 390 34 8 chr21 17143767 17143885 -27763685 - LTR67 LTR ERVL -333 224 104 247 64 21 21 chr21 17144807 17144854 -27762716 + (CAAAAA)n Simple_repeat Simple_repeat 2 48 0 23 0 0 0 chr21 17145548 17145571 -27761999 + AT_rich Low_complexity Low_complexity 1 23 0 234 192 0 0 chr21 17145633 17145685 -27761885 + GA-rich Low_complexity Low_complexity 2 53 0 186 209 0 0 chr21 17145984 17146027 -27761543 + A-rich Low_complexity Low_complexity 2 44 0 2008 117 0 3 chr21 17146183 17146507 -27761063 - AluSx SINE Alu 0 323 1 32 0 0 0 chr21 17147072 17147104 -27760466 + AT_rich Low_complexity Low_complexity 1 32 0 973 236 39 34 chr21 17147158 17147708 -27759862 - MER114 LTR ERV 0 648 45 37 23 0 0 chr21 17147829 17147873 -27759697 + AT_rich Low_complexity Low_complexity 1 44 0 2311 75 7 0 chr21 17147893 17148201 -27759369 + AluY SINE Alu 1 310 -1 207 0 0 0 chr21 17150026 17150049 -27757521 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 1770 220 9 28 chr21 17151012 17151434 -27756136 + MLT2D LTR ERVL 1 414 0 204 0 54 27 chr21 17151985 17152022 -27755548 + (TTTA)n Simple_repeat Simple_repeat 2 39 0 6090 82 17 2 chr21 17152024 17152863 -27754707 - L1PA8A LINE L1 -27 6104 5254 3749 107 9 0 chr21 17152861 17153405 -27754165 + L1PA8A LINE L1 4700 5248 -898 * 12491 250 35 12 chr21 17153403 17158656 -27748914 - L1PA16 LINE L1 -45 7559 2179 533 368 14 18 chr21 17158845 17159065 -27748505 - L1PA16 LINE L1 -6568 1006 788 23 33 0 0 chr21 17160614 17160644 -27746926 + AT_rich Low_complexity Low_complexity 1 30 0 321 313 65 60 chr21 17161474 17161675 -27745895 - MLT1H LTR MaLR -242 307 106 707 249 92 0 chr21 17162855 17163028 -27744542 + LTR16A LTR ERVL 253 441 -9 658 265 26 57 chr21 17163267 17163497 -27744073 - MIR SINE MIR -39 223 1 2355 170 16 21 chr21 17163498 17163934 -27743636 - Tigger2a DNA MER2_type 0 434 1 228 313 65 32 chr21 17164043 17164260 -27743310 - L2 LINE L2 -963 2351 2128 666 146 0 0 chr21 17164278 17164381 -27743189 + FLAM_A SINE Alu 18 120 -22 180 0 0 0 chr21 17164381 17164401 -27743169 + (TTAA)n Simple_repeat Simple_repeat 3 22 0 27 92 0 0 chr21 17164942 17165018 -27742552 + AT_rich Low_complexity Low_complexity 1 76 0 21 36 0 0 chr21 17165663 17165691 -27741879 + AT_rich Low_complexity Low_complexity 1 28 0 2045 106 7 3 chr21 17165981 17166273 -27741297 + AluSc SINE Alu 1 293 -16 825 142 52 0 chr21 17166445 17166579 -27740991 + THE1-int LTR MaLR 150 290 -1290 1317 267 108 47 chr21 17166677 17167255 -27740315 + L1MDa LINE L1 33 953 -5587 1710 161 28 34 chr21 17167322 17167675 -27739895 + THE1C LTR MaLR 25 375 0 9779 133 13 44 chr21 17167701 17169323 -27738247 + THE1C-int LTR MaLR 7 1578 -2 1752 166 32 29 chr21 17169325 17169699 -27737871 + THE1C LTR MaLR 1 375 0 917 183 131 33 chr21 17169719 17169870 -27737700 + L1MDa LINE L1 969 1104 -5436 4275 154 10 36 chr21 17169870 17170670 -27736900 - MER4E LTR ERV1 0 779 1 917 183 131 33 chr21 17170670 17170727 -27736843 + L1MDa LINE L1 1104 1154 -5386 2354 128 5 16 chr21 17170727 17171095 -27736475 - THE1B LTR MaLR 0 364 1 917 183 131 33 chr21 17171095 17171169 -27736401 + L1MDa LINE L1 1154 1219 -5321 2087 138 0 6 chr21 17171169 17171481 -27736089 + AluSg SINE Alu 1 310 0 917 183 131 33 chr21 17171481 17171502 -27736068 + L1MDa LINE L1 1219 1304 -5236 1307 227 25 91 chr21 17171507 17172101 -27735469 + L1MDa LINE L1 2872 3426 -3114 23 0 0 0 chr21 17172257 17172280 -27735290 + AT_rich Low_complexity Low_complexity 1 23 0 303 336 111 69 chr21 17173961 17174294 -27733276 - L2 LINE L2 -39 3233 2887 282 56 0 0 chr21 17174401 17174437 -27733133 + (TG)n Simple_repeat Simple_repeat 1 36 0 249 318 177 9 chr21 17175141 17175361 -27732209 - L2 LINE L2 -675 2639 2383 251 351 78 38 chr21 17175491 17175912 -27731658 - L2 LINE L2 -1491 1823 1386 1657 238 46 15 chr21 17177064 17177425 -27730145 + MLT2D LTR ERVL 1 376 -38 768 52 0 0 chr21 17177425 17177522 -27730048 + (TA)n Simple_repeat Simple_repeat 1 97 0 1657 238 46 15 chr21 17177522 17177551 -27730019 + MLT2D LTR ERVL 376 403 -11 607 217 0 17 chr21 17177666 17177786 -27729784 + FRAM SINE Alu 37 154 -22 21 36 0 0 chr21 17177980 17178008 -27729562 + AT_rich Low_complexity Low_complexity 1 28 0 22 0 0 0 chr21 17178435 17178457 -27729113 + AT_rich Low_complexity Low_complexity 1 22 0 21 36 0 0 chr21 17179179 17179207 -27728363 + AT_rich Low_complexity Low_complexity 1 28 0 1124 108 0 0 chr21 17179357 17179514 -27728056 + AluSg/x SINE Alu 141 297 -15 1422 286 147 52 chr21 17180269 17181288 -27726282 + L2 LINE L2 1595 2710 -604 29 0 0 0 chr21 17181560 17181589 -27725981 + AT_rich Low_complexity Low_complexity 1 29 0 13852 181 38 15 chr21 17182184 17183554 -27724016 - L1PA13 LINE L1 -4 7597 6261 1659 176 27 29 chr21 17183554 17183928 -27723642 + THE1C LTR MaLR 3 375 0 13852 181 38 15 chr21 17183928 17184379 -27723191 - L1PA13 LINE L1 -1340 6261 5822 1856 143 9 40 chr21 17184379 17184701 -27722869 - AluSx SINE Alu 0 312 1 13852 181 38 15 chr21 17184701 17186787 -27720783 - L1PA13 LINE L1 -1779 5822 3606 216 0 0 0 chr21 17187272 17187296 -27720274 + (TAAA)n Simple_repeat Simple_repeat 2 25 0 2153 232 13 15 chr21 17187297 17187841 -27719729 - L1PA13 LINE L1 -3975 3609 3067 1859 157 0 27 chr21 17187842 17188136 -27719434 + AluSx SINE Alu 1 286 -26 442 209 0 0 chr21 17188190 17188276 -27719294 - L1PA13 LINE L1 -4510 3071 2986 26 0 0 0 chr21 17188276 17188302 -27719268 + AT_rich Low_complexity Low_complexity 1 26 0 42829 34 21 1 chr21 17188302 17194327 -27713243 - L1PA3 LINE L1 -3 6152 4 3344 143 12 0 chr21 17194330 17194891 -27712679 - L1PA13 LINE L1 -4581 3000 2433 5236 251 42 16 chr21 17194937 17195133 -27712437 - L1PA13 LINE L1 -6202 1379 1190 1926 174 120 5 chr21 17195133 17195517 -27712053 - MSTA LTR MaLR 0 428 1 5236 251 42 16 chr21 17195517 17196657 -27710913 - L1PA13 LINE L1 -6391 1190 8 21 0 0 0 chr21 17196877 17196898 -27710672 + AT_rich Low_complexity Low_complexity 1 21 0 1918 159 7 0 chr21 17197622 17197931 -27709639 + AluSx SINE Alu 1 311 -1 674 299 11 0 chr21 17198762 17198946 -27708624 - MER5A DNA MER1_type -2 187 2 17614 119 22 9 chr21 17199596 17202268 -27705302 - Charlie3 DNA MER1_type -4 2706 2 4519 105 27 1 chr21 17202396 17202749 -27704821 - L1PB1 LINE L1 -1 6150 5807 342 0 0 0 chr21 17202749 17202787 -27704783 + (TG)n Simple_repeat Simple_repeat 2 39 0 4519 105 27 1 chr21 17202787 17203109 -27704461 - L1PB1 LINE L1 -344 5807 5458 342 0 0 0 chr21 17203497 17203535 -27704035 + (TG)n Simple_repeat Simple_repeat 2 39 0 313 366 192 7 chr21 17205542 17205829 -27701741 - L2 LINE L2 -29 3284 2945 730 206 8 0 chr21 17205831 17205962 -27701608 + AluJb SINE Alu 1 132 -180 871 218 6 0 chr21 17205996 17206166 -27701404 + AluJb SINE Alu 122 292 -20 371 297 92 36 chr21 17206234 17206497 -27701073 - MLT1I LTR MaLR -8 442 120 24 53 0 0 chr21 17207377 17207415 -27700155 + AT_rich Low_complexity Low_complexity 1 38 0 373 291 0 16 chr21 17207649 17207776 -27699794 + (TA)n Simple_repeat Simple_repeat 1 125 0 1485 280 135 11 chr21 17207778 17208625 -27698945 + L1MC2 LINE L1 2681 3632 -2514 1286 198 112 35 chr21 17208627 17208966 -27698604 - MLT1A2 LTR MaLR 0 374 10 1971 237 40 20 chr21 17208972 17209580 -27697990 + L1MC2 LINE L1 3629 4248 -1898 2277 181 66 58 chr21 17209607 17210226 -27697344 + L1MC2 LINE L1 5706 6329 -15 192 77 0 0 chr21 17210253 17210279 -27697291 + (A)n Simple_repeat Simple_repeat 1 26 0 23 54 0 0 chr21 17210431 17210468 -27697102 + AT_rich Low_complexity Low_complexity 1 37 0 1106 275 128 67 chr21 17210642 17211836 -27695734 - HAL1 LINE L1 -246 2261 995 202 250 40 92 chr21 17212314 17212390 -27695180 - L2 LINE L2 0 3313 3242 1664 177 13 28 chr21 17214048 17214365 -27693205 + AluSx SINE Alu 1 312 0 189 147 0 0 chr21 17214673 17214707 -27692863 + (GA)n Simple_repeat Simple_repeat 1 34 0 24 32 0 0 chr21 17215504 17215535 -27692035 + AT_rich Low_complexity Low_complexity 1 31 0 3699 111 19 7 chr21 17215822 17216406 -27691164 - L1PA13 LINE L1 -5 6158 5568 537 316 20 17 chr21 17216416 17216717 -27690853 - L1ME LINE L1 -4574 1687 1386 1748 270 87 49 chr21 17216747 17217945 -27689625 - L1ME LINE L1 -4831 1249 6 203 253 0 53 chr21 17218855 17218950 -27688620 + (CAAA)n Simple_repeat Simple_repeat 3 92 0 298 285 66 20 chr21 17219035 17219186 -27688384 + L1MC4a LINE L1 5308 5465 -2343 422 282 107 53 chr21 17219324 17219760 -27687810 + MER20B DNA MER1_type 180 650 -133 1519 173 35 28 chr21 17219760 17220049 -27687521 - AluJb SINE Alu -21 291 1 422 282 107 53 chr21 17220049 17220137 -27687433 + MER20B DNA MER1_type 650 732 -51 827 299 70 39 chr21 17220229 17220744 -27686826 + L1MC4a LINE L1 5474 6004 -1804 30 27 0 0 chr21 17222545 17222582 -27684988 + AT_rich Low_complexity Low_complexity 1 37 0 25 65 0 0 chr21 17223216 17223262 -27684308 + AT_rich Low_complexity Low_complexity 1 46 0 247 269 22 22 chr21 17223429 17223563 -27684007 - L1ME3A LINE L1 -233 5937 5804 342 365 65 36 chr21 17224223 17224530 -27683040 - L1ME3A LINE L1 -2228 5580 5265 864 233 50 84 chr21 17224600 17224957 -27682613 - MER2 DNA MER2_type 0 345 1 237 302 58 19 chr21 17224983 17225188 -27682382 - L1ME3A LINE L1 -974 5172 4960 927 195 43 17 chr21 17226357 17226588 -27680982 + L1MB3 LINE L1 5945 6181 -2 2046 105 0 4 chr21 17226668 17226944 -27680626 + AluSg SINE Alu 1 275 -35 270 0 0 0 chr21 17226944 17226974 -27680596 + (TTTTG)n Simple_repeat Simple_repeat 2 31 0 1571 162 99 24 chr21 17228290 17228623 -27678947 + THE1B LTR MaLR 1 358 -6 670 131 10 0 chr21 17229074 17229173 -27678397 + MSTA LTR MaLR 1 100 -328 1069 62 8 0 chr21 17229174 17229304 -27678266 + AluY SINE Alu 130 260 -51 18987 168 26 18 chr21 17229305 17232734 -27674836 - L1M1 LINE L1 -4098 3467 10 777 229 64 117 chr21 17232773 17233148 -27674422 - MER57A LTR ERV1 -3 400 46 252 207 35 35 chr21 17234041 17234128 -27673442 + (TATATG)n Simple_repeat Simple_repeat 6 92 0 2181 216 51 2 chr21 17235784 17236233 -27671337 - LTR42 LTR ERVL -24 471 1 289 296 19 82 chr21 17236403 17236562 -27671008 + MIR SINE MIR 88 236 -26 4713 164 39 24 chr21 17236617 17237527 -27670043 + MER49 LTR ERV1 1 923 0 472 286 66 19 chr21 17237839 17238052 -27669518 + MIR SINE MIR 40 262 0 1652 162 133 3 chr21 17239093 17239438 -27668132 - MLT1B LTR MaLR 0 390 1 945 226 51 72 chr21 17239492 17239824 -27667746 - MLT1D LTR MaLR -180 325 1 223 174 0 0 chr21 17241352 17241398 -27666172 + (TA)n Simple_repeat Simple_repeat 2 47 0 383 333 66 51 chr21 17241508 17241919 -27665651 - MERVL LTR ERVL -1075 4410 3994 862 179 67 98 chr21 17242441 17242726 -27664844 + L1MB8 LINE L1 5902 6177 -1 466 296 15 7 chr21 17244359 17244494 -27663076 + LTR16B LTR ERVL 185 320 -144 474 178 0 0 chr21 17245039 17245129 -27662441 + CT-rich Low_complexity Low_complexity 4 93 0 180 0 0 0 chr21 17245580 17245600 -27661970 + (TG)n Simple_repeat Simple_repeat 2 21 0 2400 58 0 0 chr21 17245644 17245939 -27661631 + AluY SINE Alu 1 295 -16 222 191 0 0 chr21 17247146 17247193 -27660377 + (CA)n Simple_repeat Simple_repeat 1 47 0 22 0 0 0 chr21 17248689 17248711 -27658859 + AT_rich Low_complexity Low_complexity 1 22 0 22 56 0 0 chr21 17249099 17249135 -27658435 + AT_rich Low_complexity Low_complexity 1 36 0 48 32 0 0 chr21 17249194 17249256 -27658314 + AT_rich Low_complexity Low_complexity 1 62 0 307 373 163 20 chr21 17249256 17249508 -27658062 - L2 LINE L2 -6 3266 2979 461 376 61 4 chr21 17249704 17249951 -27657619 + MLT1J1 LTR MaLR 54 314 -132 631 299 16 0 chr21 17249952 17250136 -27657434 - MER5A DNA MER1_type -1 188 2 209 210 16 0 chr21 17250717 17250779 -27656791 + (TA)n Simple_repeat Simple_repeat 2 64 0 2129 93 7 3 chr21 17250813 17251103 -27656467 + AluSc SINE Alu 1 291 -18 293 332 49 5 chr21 17252108 17252313 -27655257 - Charlie8 DNA MER1_type -1899 518 305 344 345 149 27 chr21 17252828 17253237 -27654333 + L2 LINE L2 1799 2257 -1057 211 327 39 39 chr21 17253888 17253992 -27653578 + L2 LINE L2 3133 3236 -36 21 0 0 0 chr21 17254608 17254629 -27652941 + AT_rich Low_complexity Low_complexity 1 21 0 26 30 0 0 chr21 17255502 17255535 -27652035 + AT_rich Low_complexity Low_complexity 1 33 0 205 73 24 49 chr21 17255650 17255691 -27651879 + (TTTTG)n Simple_repeat Simple_repeat 3 42 0 25 0 0 0 chr21 17256421 17256446 -27651124 + AT_rich Low_complexity Low_complexity 1 25 0 26 0 0 0 chr21 17256544 17256570 -27651000 + AT_rich Low_complexity Low_complexity 1 26 0 203 133 0 0 chr21 17256710 17256740 -27650830 + (TG)n Simple_repeat Simple_repeat 1 30 0 29 84 0 0 chr21 17258027 17258098 -27649472 + AT_rich Low_complexity Low_complexity 1 71 0 2074 231 32 10 chr21 17259782 17259870 -27647700 - MLT1D LTR MaLR 0 505 420 3413 140 4 4 chr21 17259870 17260397 -27647173 + MER1A DNA MER1_type 1 527 0 2074 231 32 10 chr21 17260397 17260802 -27646768 - MLT1D LTR MaLR -85 420 1 399 353 25 21 chr21 17261105 17261346 -27646224 + MLT1J LTR MaLR 6 247 -264 247 269 28 37 chr21 17261434 17261542 -27646028 + MLT1J LTR MaLR 401 507 -4 312 27 0 0 chr21 17262583 17262620 -27644950 + (CA)n Simple_repeat Simple_repeat 1 37 0 31 0 0 0 chr21 17262790 17262821 -27644749 + AT_rich Low_complexity Low_complexity 1 31 0 29 28 0 0 chr21 17263079 17263115 -27644455 + AT_rich Low_complexity Low_complexity 1 36 0 393 22 0 0 chr21 17264041 17264087 -27643483 + (TG)n Simple_repeat Simple_repeat 1 46 0 23 0 0 0 chr21 17264915 17264938 -27642632 + AT_rich Low_complexity Low_complexity 1 23 0 880 95 6 7 chr21 17265026 17265176 -27642394 - L1PA8A LINE L1 -406 5725 5590 237 234 128 21 chr21 17265341 17265435 -27642135 - MIR SINE MIR -93 169 66 3546 160 18 37 chr21 17265444 17266168 -27641402 + MER50 LTR ERV1 1 710 -24 23 54 0 0 chr21 17266340 17266377 -27641193 + AT_rich Low_complexity Low_complexity 1 37 0 1020 157 124 23 chr21 17266724 17266941 -27640629 - AluJo SINE Alu -59 253 15 2079 230 99 11 chr21 17267595 17268222 -27639348 - L1MB8 LINE L1 0 6178 5608 2161 188 44 69 chr21 17268222 17268790 -27638780 + MLT2B3 LTR ERVL 1 554 0 2079 230 99 11 chr21 17268790 17269246 -27638324 - L1MB8 LINE L1 -570 5608 4979 22 0 0 0 chr21 17269294 17269316 -27638254 + AT_rich Low_complexity Low_complexity 1 22 0 973 290 37 70 chr21 17269698 17270097 -27637473 - L1M4b LINE L1 -5635 1224 596 1197 201 15 114 chr21 17270106 17270499 -27637071 + MLT1A1 LTR MaLR 7 360 -5 906 285 72 55 chr21 17270534 17271022 -27636548 - L1M4b LINE L1 -6353 506 11 769 296 140 39 chr21 17272603 17273090 -27634480 - MLT1H LTR MaLR -2 547 12 269 200 28 21 chr21 17273536 17273681 -27633889 + (TA)n Simple_repeat Simple_repeat 2 147 0 28 29 0 0 chr21 17273905 17273940 -27633630 + AT_rich Low_complexity Low_complexity 1 35 0 22 35 0 0 chr21 17274001 17274030 -27633540 + AT_rich Low_complexity Low_complexity 1 29 0 186 43 0 0 chr21 17274120 17274143 -27633427 + (TA)n Simple_repeat Simple_repeat 2 24 0 21 36 0 0 chr21 17274155 17274183 -27633387 + AT_rich Low_complexity Low_complexity 1 28 0 45 83 0 0 chr21 17275190 17275298 -27632272 + AT_rich Low_complexity Low_complexity 1 108 0 4376 143 61 18 chr21 17275298 17276133 -27631437 - L1MA5 LINE L1 -15 6285 5415 3428 187 24 30 chr21 17276133 17276934 -27630636 + L1MA5 LINE L1 4608 5403 -743 269 378 61 5 chr21 17277133 17277329 -27630241 + MIR SINE MIR 49 255 -7 186 43 0 0 chr21 17279088 17279111 -27628459 + (CA)n Simple_repeat Simple_repeat 1 23 0 21 0 0 0 chr21 17279342 17279363 -27628207 + AT_rich Low_complexity Low_complexity 1 21 0 198 323 16 0 chr21 17279467 17279529 -27628041 - MIR SINE MIR -79 129 67 322 285 112 43 chr21 17279948 17280357 -27627213 + LTR33A LTR ERVL 15 475 -48 21 36 0 0 chr21 17280717 17280745 -27626825 + AT_rich Low_complexity Low_complexity 1 28 0 743 163 0 31 chr21 17281628 17281757 -27625813 - AluJb SINE Alu -187 125 1 226 278 0 42 chr21 17282245 17282317 -27625253 + G-rich Low_complexity Low_complexity 5 73 0 458 200 113 0 chr21 17282829 17282900 -27624670 + L1MA9 LINE L1 6079 6141 -171 360 0 0 0 chr21 17282900 17282940 -27624630 + (CA)n Simple_repeat Simple_repeat 1 40 0 458 200 113 0 chr21 17282940 17282983 -27624587 + L1MA9 LINE L1 6141 6206 -106 1967 186 36 31 chr21 17282986 17283534 -27624036 - MLT2A2 LTR ERVL 0 554 1 454 133 102 0 chr21 17283534 17283632 -27623938 + L1MA9 LINE L1 6205 6312 0 2242 83 0 0 chr21 17284746 17285034 -27622536 - AluSg SINE Alu -22 288 1 1670 76 0 9 chr21 17285709 17285933 -27621637 + AluY SINE Alu 76 297 -14 254 109 47 47 chr21 17286936 17287000 -27620570 + T-rich Low_complexity Low_complexity 2 65 0 35 54 0 0 chr21 17287901 17287957 -27619613 + AT_rich Low_complexity Low_complexity 1 56 0 2321 82 0 3 chr21 17288303 17288607 -27618963 + AluY SINE Alu 1 303 -8 1100 204 19 23 chr21 17290115 17290379 -27617191 + L1MA8 LINE L1 5982 6244 -47 5251 210 22 54 chr21 17290397 17291923 -27615647 + L1PA11 LINE L1 886 2361 -3785 8005 157 37 18 chr21 17291923 17294152 -27613418 + L1PA11 LINE L1 3877 6171 -3 359 292 84 32 chr21 17294467 17294621 -27612949 + MLT1J LTR MaLR 1 162 -349 333 284 144 42 chr21 17294655 17294870 -27612700 + MLT1J LTR MaLR 231 467 -44 189 308 77 15 chr21 17294905 17295035 -27612535 - L2 LINE L2 -1265 2049 1912 1707 144 40 7 chr21 17295426 17295704 -27611866 + AluJo SINE Alu 1 287 -25 29 47 0 0 chr21 17295867 17295910 -27611660 + AT_rich Low_complexity Low_complexity 1 43 0 271 327 0 48 chr21 17298576 17298680 -27608890 + MLT1J2 LTR MaLR 30 128 -322 2209 112 3 0 chr21 17299039 17299333 -27608237 + AluSc SINE Alu 1 295 -14 21 0 0 0 chr21 17299446 17299467 -27608103 + AT_rich Low_complexity Low_complexity 1 21 0 1079 226 104 27 chr21 17299733 17300136 -27607434 + HsTC2 DNA Tc2 1288 1897 -1 21 0 0 0 chr21 17300172 17300193 -27607377 + AT_rich Low_complexity Low_complexity 1 21 0 573 332 102 16 chr21 17300829 17301202 -27606368 + MLT1J2 LTR MaLR 1 405 -45 258 294 0 0 chr21 17301340 17301408 -27606162 + L1MC/D LINE L1 5304 5371 -2414 543 271 21 7 chr21 17301410 17301554 -27606016 + MLT1A1 LTR MaLR 3 148 -217 463 230 111 0 chr21 17301558 17301684 -27605886 + L1MC/D LINE L1 5493 5632 -727 1587 140 3 79 chr21 17301728 17302093 -27605477 - MER4A LTR ERV1 0 664 261 699 101 0 10 chr21 17302093 17302192 -27605378 - MER4A LTR ERV1 -566 98 1 1428 196 55 166 chr21 17302199 17302888 -27604682 + LTR8A LTR ERV1 71 683 -44 5939 214 47 47 chr21 17302888 17304302 -27603268 - MER65C-int LTR ERV1 -722 3469 2055 889 288 100 15 chr21 17304338 17304792 -27602778 - MER101B LTR ERV1 -32 512 24 2057 223 3 10 chr21 17304829 17305215 -27602355 - MER65C-int LTR ERV1 -2148 2043 1661 1458 192 99 153 chr21 17305215 17306140 -27601430 + LTR28 LTR ERV1 1 1016 -4 1985 187 61 25 chr21 17306244 17306640 -27600930 - MER65C-int LTR ERV1 -2527 1664 1255 2613 38 0 6 chr21 17306641 17306954 -27600616 + AluY SINE Alu 1 311 0 1957 57 209 0 chr21 17307152 17307449 -27600121 - L1PA8 LINE L1 0 6172 5814 2861 243 21 27 chr21 17307449 17308162 -27599408 - MER65C-int LTR ERV1 -2531 4227 3519 2372 216 31 4 chr21 17308688 17309175 -27598395 - MER65C-int LTR ERV1 -3691 500 1 197 119 24 0 chr21 17310135 17310177 -27597393 + A-rich Low_complexity Low_complexity 1 43 0 208 141 14 42 chr21 17310210 17310281 -27597289 + (TTAAA)n Simple_repeat Simple_repeat 1 69 0 33 73 0 0 chr21 17310290 17310358 -27597212 + AT_rich Low_complexity Low_complexity 1 68 0 258 328 37 62 chr21 17310710 17310799 -27596771 + L2 LINE L2 2935 3025 -288 2023 114 3 10 chr21 17310799 17311107 -27596463 - AluSx SINE Alu -6 306 1 258 328 37 62 chr21 17311107 17311340 -27596230 + L2 LINE L2 3025 3249 -64 1641 176 3 7 chr21 17311416 17311712 -27595858 - MER65C LTR ERV1 -1 460 166 32 0 0 0 chr21 17311777 17311809 -27595761 + AT_rich Low_complexity Low_complexity 1 32 0 264 321 37 45 chr21 17311991 17312125 -27595445 + MIR SINE MIR 45 177 -85 1535 213 6 13 chr21 17312348 17312662 -27594908 + AluJb SINE Alu 1 312 0 308 186 0 14 chr21 17312665 17312735 -27594835 + GA-rich Low_complexity Low_complexity 3 71 0 1498 120 5 5 chr21 17312782 17313036 -27594534 - AluSq SINE Alu 0 319 66 2180 200 50 2 chr21 17313268 17313708 -27593862 - LOR1b LTR ERV1 0 461 1 24 67 0 0 chr21 17314315 17314360 -27593210 + AT_rich Low_complexity Low_complexity 1 45 0 25 65 0 0 chr21 17314423 17314469 -27593101 + AT_rich Low_complexity Low_complexity 1 46 0 228 257 29 0 chr21 17314536 17314606 -27592964 + L1MC4 LINE L1 6625 6696 -1346 24 0 0 0 chr21 17315032 17315056 -27592514 + AT_rich Low_complexity Low_complexity 1 24 0 1876 205 70 0 chr21 17315645 17316015 -27591555 + MSTD LTR MaLR 1 396 0 749 280 10 0 chr21 17316369 17316576 -27590994 - MER6B DNA MER2_type -1 209 1 833 194 0 7 chr21 17316877 17317032 -27590538 + MLT1A1 LTR MaLR 1 154 -211 462 217 26 43 chr21 17317035 17317150 -27590420 + FLAM_A SINE Alu 3 115 -27 210 118 0 0 chr21 17317152 17317186 -27590384 + (TGAA)n Simple_repeat Simple_repeat 3 36 0 614 234 33 77 chr21 17317187 17317355 -27590215 + MLT1A1 LTR MaLR 149 344 -52 210 143 0 0 chr21 17317481 17317516 -27590054 + (TAAA)n Simple_repeat Simple_repeat 1 35 0 24 53 0 0 chr21 17317751 17317789 -27589781 + AT_rich Low_complexity Low_complexity 1 38 0 180 349 75 41 chr21 17318351 17318497 -27589073 - MIR3 SINE MIR -41 167 17 28 48 0 0 chr21 17319571 17319613 -27587957 + AT_rich Low_complexity Low_complexity 1 42 0 192 77 0 0 chr21 17320919 17320945 -27586625 + (TTTG)n Simple_repeat Simple_repeat 4 29 0 21 0 0 0 chr21 17321534 17321555 -27586015 + AT_rich Low_complexity Low_complexity 1 21 0 23 0 0 0 chr21 17321839 17321862 -27585708 + AT_rich Low_complexity Low_complexity 1 23 0 488 220 20 0 chr21 17321863 17321963 -27585607 - FLAM_A SINE Alu -21 121 20 1796 258 29 35 chr21 17322208 17322692 -27584878 + MLT1E3 LTR MaLR 144 624 0 1137 153 18 9 chr21 17323366 17323595 -27583975 - L1PA13 LINE L1 0 6163 5933 22 0 0 0 chr21 17324113 17324135 -27583435 + AT_rich Low_complexity Low_complexity 1 22 0 384 22 0 0 chr21 17324654 17324699 -27582871 + (CA)n Simple_repeat Simple_repeat 2 46 0 7834 180 53 17 chr21 17324714 17326740 -27580830 + L1MC1 LINE L1 22 2204 -4222 1239 230 121 0 chr21 17326735 17327091 -27580479 + L1MC1 LINE L1 4690 5088 -1338 * 5249 13 0 0 chr21 17327091 17327689 -27579881 + L1HS LINE L1 5556 6153 -2 186 71 0 0 chr21 17327690 17327718 -27579852 + (TAAAAA)n Simple_repeat Simple_repeat 3 30 0 5125 195 43 17 chr21 17327721 17329212 -27578358 + L1MC1 LINE L1 5087 6612 -1 635 242 59 59 chr21 17329256 17329475 -27578095 + MER20 DNA MER1_type 1 219 0 187 31 62 0 chr21 17330505 17330537 -27577033 + A-rich Low_complexity Low_complexity 2 35 0 619 180 62 45 chr21 17331125 17331139 -27576431 + MER53 DNA DNA 9 21 -168 2052 129 20 3 chr21 17331139 17331442 -27576128 + AluSx SINE Alu 1 308 -4 619 180 62 45 chr21 17331442 17331605 -27575965 + MER53 DNA DNA 21 189 0 355 249 10 137 chr21 17333214 17333419 -27574151 + MER104 DNA Tc2 1 179 -1 36 23 0 0 chr21 17334275 17334318 -27573252 + AT_rich Low_complexity Low_complexity 1 43 0 24 67 0 0 chr21 17335278 17335323 -27572247 + AT_rich Low_complexity Low_complexity 1 45 0 252 91 0 0 chr21 17335658 17335691 -27571879 - MLT1I LTR MaLR -269 140 108 698 243 87 25 chr21 17335776 17336142 -27571428 - L1M4 LINE L1 -1486 4660 4272 188 259 141 24 chr21 17337694 17337779 -27569791 - L2 LINE L2 -2 3311 3217 255 284 239 9 chr21 17338385 17338494 -27569076 + MER5A DNA MER1_type 47 180 -9 771 283 11 11 chr21 17338559 17338736 -27568834 + MER5A DNA MER1_type 13 189 0 255 321 12 95 chr21 17338751 17338919 -27568651 + MER5B DNA MER1_type 24 177 -1 1694 228 33 31 chr21 17339074 17339530 -27568040 + MSTB2 LTR MaLR 1 457 0 1208 81 6 0 chr21 17339686 17339860 -27567710 + (TCTCC)n Simple_repeat Simple_repeat 4 178 0 354 45 0 0 chr21 17339861 17339905 -27567665 + (TCCCC)n Simple_repeat Simple_repeat 4 47 0 189 0 0 0 chr21 17339905 17339926 -27567644 + (TTTTC)n Simple_repeat Simple_repeat 2 22 0 2334 18 4 4 chr21 17339928 17340207 -27567363 - AluY SINE Alu -32 279 1 318 26 0 0 chr21 17340990 17341029 -27566541 + (TG)n Simple_repeat Simple_repeat 2 40 0 541 26 52 0 chr21 17341523 17341600 -27565970 + (TAAAA)n Simple_repeat Simple_repeat 2 82 0 696 189 30 80 chr21 17341939 17342140 -27565430 - L1MC/D LINE L1 -2042 5743 5553 * 1934 240 131 40 chr21 17342139 17342947 -27564623 + L1MD3 LINE L1 6233 7114 -881 316 300 0 0 chr21 17342950 17343040 -27564530 + MLT1F1 LTR MaLR 36 125 -442 847 218 18 0 chr21 17343059 17343224 -27564346 + L1MC3 LINE L1 7194 7361 -424 2252 97 0 3 chr21 17343237 17343537 -27564033 + AluSp SINE Alu 1 299 -14 22 0 0 0 chr21 17344127 17344149 -27563421 + AT_rich Low_complexity Low_complexity 1 22 0 27 49 0 0 chr21 17344345 17344386 -27563184 + AT_rich Low_complexity Low_complexity 1 41 0 30 59 0 0 chr21 17344413 17344464 -27563106 + AT_rich Low_complexity Low_complexity 1 51 0 21 57 0 0 chr21 17344582 17344617 -27562953 + AT_rich Low_complexity Low_complexity 1 35 0 223 279 16 16 chr21 17344995 17345056 -27562514 + L2 LINE L2 3211 3271 -1 213 178 0 0 chr21 17347340 17347385 -27560185 + T-rich Low_complexity Low_complexity 1 45 0 327 376 103 22 chr21 17347574 17347981 -27559589 + L2 LINE L2 2492 2931 -383 24 32 0 0 chr21 17348946 17348977 -27558593 + AT_rich Low_complexity Low_complexity 1 31 0 227 137 0 20 chr21 17349569 17349620 -27557950 + L1MCa LINE L1 2005 2054 -4372 718 291 62 0 chr21 17349668 17349878 -27557692 + MIR SINE MIR 39 261 -1 431 240 10 10 chr21 17350358 17350462 -27557108 + MLT1J LTR MaLR 69 172 -339 584 304 173 18 chr21 17350774 17351103 -27556467 + L2 LINE L2 2925 3304 -9 193 411 50 7 chr21 17351190 17351331 -27556239 - L2 LINE L2 -427 2887 2741 1804 137 11 0 chr21 17351843 17352120 -27555450 + AluSq SINE Alu 17 296 -17 207 182 45 30 chr21 17352147 17352213 -27555357 + A-rich Low_complexity Low_complexity 2 68 0 266 250 46 37 chr21 17352620 17352728 -27554842 + MIR SINE MIR 153 261 -1 317 298 177 19 chr21 17353001 17353216 -27554354 - L3 LINE CR1 -428 1149 901 456 233 75 44 chr21 17353790 17353860 -27553710 + MIR SINE MIR 99 165 -97 2019 134 0 16 chr21 17353860 17354167 -27553403 - AluSc SINE Alu -7 302 1 456 233 75 44 chr21 17354167 17354255 -27553315 + MIR SINE MIR 165 262 0 21 0 0 0 chr21 17354255 17354276 -27553294 + AT_rich Low_complexity Low_complexity 1 21 0 2041 121 13 7 chr21 17354969 17355275 -27552295 - AluSg SINE Alu 0 310 3 2524 68 0 0 chr21 17355617 17355928 -27551642 - AluY SINE Alu 0 311 1 623 279 164 14 chr21 17356252 17356600 -27550970 + LTR16A1 LTR ERVL 55 454 -3 21 95 0 0 chr21 17356895 17356958 -27550612 + AT_rich Low_complexity Low_complexity 1 63 0 2986 82 13 22 chr21 17357231 17357682 -27549888 - L1PA13 LINE L1 -5 6158 5712 23 33 0 0 chr21 17357922 17357952 -27549618 + AT_rich Low_complexity Low_complexity 1 30 0 1875 148 3 14 chr21 17357961 17358252 -27549318 - AluSg SINE Alu -20 290 3 185 365 16 0 chr21 17358324 17358387 -27549183 + MIR SINE MIR 83 146 -62 453 261 33 118 chr21 17358387 17358659 -27548911 + HAL1 LINE L1 1 249 -2258 * 6179 131 3 4 chr21 17358654 17359588 -27547982 - THE1B-int LTR MaLR -647 933 1 1753 128 119 33 chr21 17359588 17359923 -27547647 - THE1B LTR MaLR 0 364 1 944 258 87 92 chr21 17361477 17361997 -27545573 - MLT1H LTR MaLR -8 541 25 399 41 0 0 chr21 17362291 17362340 -27545230 + (CA)n Simple_repeat Simple_repeat 2 50 0 219 342 25 0 chr21 17362784 17362863 -27544707 - L2 LINE L2 -797 2517 2437 1832 108 4 0 chr21 17363142 17363391 -27544179 - AluSg SINE Alu -19 291 42 283 307 67 33 chr21 17365305 17365455 -27542115 + L2 LINE L2 3159 3313 0 1852 152 52 38 chr21 17365915 17366283 -27541287 - THE1C LTR MaLR -2 373 1 1948 291 83 26 chr21 17366289 17367233 -27540337 - L2 LINE L2 0 3313 2299 224 309 124 50 chr21 17367564 17367765 -27539805 - L2 LINE L2 0 3313 3098 1445 205 39 28 chr21 17368036 17368402 -27539168 + MLT1A2 LTR MaLR 1 396 0 656 167 14 22 chr21 17368404 17368542 -27539028 + MLT1A2-int LTR MaLR 2 138 -1597 1014 243 40 40 chr21 17368549 17368853 -27538717 - MER67B LTR ERV1 -357 304 1 1162 291 92 30 chr21 17368861 17369640 -27537930 - L1M4 LINE L1 -1577 4569 3742 477 95 0 12 chr21 17369643 17369727 -27537843 - Alu SINE Alu -2 310 228 564 246 16 8 chr21 17369794 17369920 -27537650 + MLT2B1 LTR ERVL 345 471 -49 210 200 20 0 chr21 17369957 17370007 -27537563 + (TA)n Simple_repeat Simple_repeat 2 52 0 203 122 54 40 chr21 17370190 17370264 -27537306 + (TATAA)n Simple_repeat Simple_repeat 1 75 0 948 203 14 14 chr21 17370355 17370567 -27537003 - L1MA9 LINE L1 -42 6270 6059 2773 205 55 24 chr21 17370569 17371551 -27536019 - L1MA9 LINE L1 -620 5692 4698 527 177 18 26 chr21 17371558 17371671 -27535899 + LTR52-int LTR ERVL 1166 1277 -4408 * 584 202 4 2 chr21 17371669 17371808 -27535762 + LTR52-int LTR ERVL 1925 2060 -1496 401 154 96 48 chr21 17371923 17372027 -27535543 + LTR52-int LTR ERVL 1088 1196 -2360 410 239 11 11 chr21 17372034 17372126 -27535444 + LTR52 LTR ERVL 309 400 -21 529 410 62 18 chr21 17372144 17372642 -27534928 - L1MEc LINE L1 -5613 783 264 247 171 24 0 chr21 17372654 17372695 -27534875 + 5S rRNA rRNA 1 42 -79 213 132 0 0 chr21 17373251 17373289 -27534281 + (CA)n Simple_repeat Simple_repeat 2 39 0 9703 163 21 30 chr21 17373810 17375278 -27532292 + Tigger1 DNA MER2_type 1 1453 -965 2522 104 13 11 chr21 17375278 17375654 -27531916 - L1PA13 LINE L1 -4 6159 5783 9703 163 21 30 chr21 17375654 17375948 -27531622 + Tigger1 DNA MER2_type 1453 1748 -670 1397 177 44 4 chr21 17375952 17376200 -27531370 + AluSx SINE Alu 6 263 -49 313 305 55 40 chr21 17376728 17376928 -27530642 + L2 LINE L2 3109 3311 -2 257 333 49 12 chr21 17378091 17378253 -27529317 - LTR67 LTR ERVL -4 553 386 693 167 16 8 chr21 17378323 17378449 -27529121 + FLAM_C SINE Alu 1 127 -16 239 273 182 42 chr21 17378512 17378655 -27528915 - LTR67 LTR ERVL -355 202 40 710 160 0 16 chr21 17379821 17379946 -27527624 - FLAM_C SINE Alu -20 123 1 33 25 0 0 chr21 17380041 17380081 -27527489 + AT_rich Low_complexity Low_complexity 1 40 0 2143 125 10 13 chr21 17380284 17380638 -27526932 - AluSx SINE Alu 0 355 3 929 248 60 10 chr21 17381012 17381465 -27526105 + MER34 LTR ERV1 14 517 -25 1955 172 77 0 chr21 17381521 17381887 -27525683 + MER57A LTR ERV1 8 401 -2 771 318 57 41 chr21 17382067 17382508 -27525062 - LTR68 LTR ERV1 -290 450 3 21 0 0 0 chr21 17382674 17382695 -27524875 + AT_rich Low_complexity Low_complexity 1 21 0 3389 208 135 57 chr21 17382876 17383918 -27523652 + LTR28 LTR ERV1 1 1750 -5 718 175 51 45 chr21 17384625 17384802 -27522768 - L1MD1 LINE L1 0 6242 6065 291 236 100 52 chr21 17384834 17385063 -27522507 - L1M4 LINE L1 -3028 3118 2879 1360 272 20 20 chr21 17385063 17385456 -27522114 - L1MDa LINE L1 -6030 510 118 41 58 0 0 chr21 17385463 17385532 -27522038 + AT_rich Low_complexity Low_complexity 1 69 0 323 279 0 0 chr21 17385573 17385641 -27521929 - L1MDa LINE L1 -6447 93 26 24 67 0 0 chr21 17385933 17385978 -27521592 + AT_rich Low_complexity Low_complexity 1 45 0 404 304 136 11 chr21 17387200 17387232 -27520338 + MIR SINE MIR 33 60 -202 279 71 0 0 chr21 17387232 17387274 -27520296 + (TTTTG)n Simple_repeat Simple_repeat 2 43 0 404 304 136 11 chr21 17387274 17387425 -27520145 + MIR SINE MIR 60 239 -23 3228 138 25 27 chr21 17387451 17388234 -27519336 + L1P5 LINE L1 4992 5775 -376 23 33 0 0 chr21 17388575 17388605 -27518965 + AT_rich Low_complexity Low_complexity 1 30 0 580 267 80 99 chr21 17388703 17389126 -27518444 - MLT1H LTR MaLR -3 546 132 1785 198 50 22 chr21 17389394 17389758 -27517812 + MSTA LTR MaLR 51 424 -4 2126 154 25 0 chr21 17389763 17390127 -27517443 + MSTA-int LTR MaLR 2 374 -1277 * 22337 26 1 0 chr21 17390126 17394344 -27513226 - L1PA2 LINE L1 0 6155 1934 6380 214 8 18 chr21 17394309 17395078 -27512492 + MSTA-int LTR MaLR 347 1121 -530 * 1731 162 32 51 chr21 17395078 17395449 -27512121 + THE1B LTR MaLR 1 364 0 11058 115 8 0 chr21 17395449 17397016 -27510554 + THE1B-int LTR MaLR 1 1580 0 1689 132 21 103 chr21 17397016 17397403 -27510167 + THE1A LTR MaLR 1 355 0 6380 214 8 18 chr21 17397403 17397609 -27509961 + MSTA-int LTR MaLR 1119 1325 -326 4261 141 16 12 chr21 17397609 17398297 -27509273 + LTR8 LTR ERV1 1 691 0 6380 214 8 18 chr21 17398297 17398635 -27508935 + MSTA-int LTR MaLR 1325 1651 0 405 242 0 10 chr21 17398637 17398736 -27508834 + MSTA LTR MaLR 3 100 -326 2426 147 24 24 chr21 17398736 17399152 -27508418 - MSTA LTR MaLR 0 428 13 985 83 0 0 chr21 17399206 17399339 -27508231 + L1MA1 LINE L1 6170 6302 0 1434 183 18 25 chr21 17399371 17399645 -27507925 + MSTA LTR MaLR 157 428 0 2149 106 0 3 chr21 17400307 17400613 -27506957 - AluSg SINE Alu 0 305 1 1704 151 89 31 chr21 17401146 17401471 -27506099 - THE1B LTR MaLR 0 364 21 965 339 54 14 chr21 17401471 17401899 -27505671 + L2 LINE L2 2371 2815 -499 491 330 24 29 chr21 17402061 17402267 -27505303 + L2 LINE L2 2873 3077 -236 271 330 75 29 chr21 17402362 17402535 -27505035 + LTR33A LTR ERVL 55 235 -288 519 114 0 0 chr21 17402577 17402656 -27504914 + AluSg/x SINE Alu 218 296 -16 1747 214 41 31 chr21 17402658 17403045 -27504525 - MSTB LTR MaLR -35 391 1 357 198 37 12 chr21 17403121 17403202 -27504368 + MLT1D LTR MaLR 48 130 -375 1137 189 8 29 chr21 17403203 17403408 -27504162 + MLT1D-int LTR MaLR 371 572 -799 1619 180 54 10 chr21 17403408 17403703 -27503867 - AluSx SINE Alu -4 308 1 1137 189 8 29 chr21 17403703 17403735 -27503835 + MLT1D-int LTR MaLR 572 603 -768 866 288 4 9 chr21 17403867 17404093 -27503477 + MLT1D-int LTR MaLR 659 883 -488 1084 287 59 51 chr21 17404177 17404668 -27502902 + MLT1D-int LTR MaLR 877 1371 0 1561 257 62 24 chr21 17404668 17405135 -27502435 + MLT1D LTR MaLR 1 485 -20 400 276 155 6 chr21 17405158 17405339 -27502231 + LTR33A LTR ERVL 287 494 -29 351 318 85 23 chr21 17405963 17406139 -27501431 - MIR SINE MIR -6 256 70 1322 212 80 13 chr21 17407293 17407637 -27499933 - MER47B DNA MER2_type -1 417 7 1793 184 37 6 chr21 17407854 17408208 -27499362 + MLT2C1 LTR ERVL 1 480 -40 3693 233 34 16 chr21 17408270 17408927 -27498643 + MLT1C-int LTR MaLR 1 680 -691 2269 205 29 0 chr21 17408927 17409371 -27498199 + MSTB2 LTR MaLR 1 457 0 3693 233 34 16 chr21 17409371 17409594 -27497976 + MLT1C-int LTR MaLR 680 897 -474 309 148 16 0 chr21 17409650 17409711 -27497859 + MLT1C-int LTR MaLR 1293 1354 -17 1624 231 111 2 chr21 17409755 17410161 -27497409 + MLT1C LTR MaLR 16 465 -2 21 0 0 0 chr21 17410345 17410366 -27497204 + AT_rich Low_complexity Low_complexity 1 21 0 1251 293 92 73 chr21 17411525 17411860 -27495710 - L2 LINE L2 -689 2625 2298 2176 125 0 0 chr21 17411860 17412157 -27495413 - AluSx SINE Alu -13 299 3 1251 293 92 73 chr21 17412157 17412225 -27495345 - L2 LINE L2 -1016 2298 2233 656 216 210 0 chr21 17412225 17412406 -27495164 - MER20 DNA MER1_type 0 219 1 1251 293 92 73 chr21 17412406 17412482 -27495088 - L2 LINE L2 -1081 2233 2160 2051 129 6 10 chr21 17412482 17412793 -27494777 + AluSx SINE Alu 1 310 -2 1251 293 92 73 chr21 17412793 17413065 -27494505 - L2 LINE L2 -1154 2160 1858 291 251 121 51 chr21 17413292 17413623 -27493947 + L1MC5 LINE L1 7311 7664 -297 1207 216 57 90 chr21 17413686 17414108 -27493462 + LTR52 LTR ERVL 12 419 -2 309 151 0 0 chr21 17414181 17414234 -27493336 + GA-rich Low_complexity Low_complexity 3 55 0 1940 133 123 0 chr21 17415073 17415397 -27492173 + THE1B LTR MaLR 1 364 0 2001 141 3 0 chr21 17415422 17415719 -27491851 + AluSx SINE Alu 1 298 -14 199 400 67 0 chr21 17416195 17416390 -27491180 - L2 LINE L2 -2861 453 246 24 32 0 0 chr21 17416965 17416996 -27490574 + AT_rich Low_complexity Low_complexity 1 31 0 1695 238 30 8 chr21 17417032 17417432 -27490138 - MLT2D LTR ERVL 0 414 6 206 357 21 36 chr21 17417656 17417796 -27489774 - MIR SINE MIR -122 140 3 23 0 0 0 chr21 17418309 17418332 -27489238 + AT_rich Low_complexity Low_complexity 1 23 0 1959 114 0 7 chr21 17418996 17419276 -27488294 - AluSg SINE Alu -2 308 31 21 36 0 0 chr21 17419975 17420003 -27487567 + AT_rich Low_complexity Low_complexity 1 28 0 1220 160 52 3 chr21 17421319 17421628 -27485942 + MSTA LTR MaLR 1 428 0 3535 194 35 50 chr21 17421730 17422699 -27484871 + LTR5 LTR ERVK 1 955 -14 1033 148 144 4 chr21 17422806 17423056 -27484514 - L1MA7 LINE L1 0 6291 6007 2639 170 37 37 chr21 17423199 17423424 -27484146 - L1MA7 LINE L1 -280 6011 5787 1260 267 67 11 chr21 17423424 17423799 -27483771 + MSTD LTR MaLR 1 396 0 2639 170 37 37 chr21 17423799 17424138 -27483432 - L1MA7 LINE L1 -503 5788 5447 30 27 0 0 chr21 17424571 17424608 -27482962 + AT_rich Low_complexity Low_complexity 1 37 0 4126 33 0 0 chr21 17424782 17425352 -27482218 - L1PA5 LINE L1 -691 5463 4894 5552 43 32 0 chr21 17425352 17426031 -27481539 + L1PA5 LINE L1 5450 6152 -2 23 33 0 0 chr21 17426032 17426062 -27481508 + AT_rich Low_complexity Low_complexity 1 30 0 250 397 63 0 chr21 17426120 17426294 -27481276 - MLT1J2 LTR MaLR -3 447 263 39 22 0 0 chr21 17426521 17426567 -27481003 + AT_rich Low_complexity Low_complexity 1 46 0 515 318 67 14 chr21 17426885 17427261 -27480309 + LTR16A LTR ERVL 34 448 -2 516 351 34 8 chr21 17427500 17427768 -27479802 + HERV16 LTR ERVL 261 535 -4461 467 16 0 16 chr21 17428056 17428117 -27479453 + (TCTA)n Simple_repeat Simple_repeat 3 62 0 1216 359 42 18 chr21 17428133 17428760 -27478810 + HERV16 LTR ERVL 930 1571 -3425 * 1395 302 81 39 chr21 17428751 17429466 -27478104 + HERV16 LTR ERVL 1698 2442 -2554 589 266 83 31 chr21 17429725 17429917 -27477653 + MER20 DNA MER1_type 18 219 0 1982 143 10 0 chr21 17429933 17430226 -27477344 - AluSx SINE Alu -16 296 1 702 307 42 0 chr21 17430299 17430511 -27477059 + LTR16A LTR ERVL 230 450 0 258 375 0 0 chr21 17430523 17430627 -27476943 + MIR SINE MIR 53 156 -106 31 88 0 0 chr21 17431325 17431405 -27476165 + AT_rich Low_complexity Low_complexity 1 80 0 21 0 0 0 chr21 17431513 17431534 -27476036 + AT_rich Low_complexity Low_complexity 1 21 0 338 382 27 27 chr21 17432040 17432265 -27475305 - MIR SINE MIR -17 245 21 24 53 0 0 chr21 17433165 17433203 -27474367 + AT_rich Low_complexity Low_complexity 1 38 0 5377 215 73 26 chr21 17433777 17434182 -27473388 - L1MB3 LINE L1 -2 6181 5796 213 39 0 0 chr21 17434182 17434208 -27473362 + (TTCA)n Simple_repeat Simple_repeat 3 28 0 5377 215 73 26 chr21 17434208 17436214 -27471356 - L1MB3 LINE L1 -387 5796 3648 426 237 3 0 chr21 17436260 17436370 -27471200 - L1MCa LINE L1 -3950 2614 2517 * 2641 262 53 32 chr21 17436364 17436486 -27471084 - L1MCa LINE L1 -4948 1097 979 1828 157 29 32 chr21 17436486 17436862 -27470708 - THE1C LTR MaLR 0 375 1 2641 262 53 32 chr21 17436862 17437580 -27469990 - L1MCa LINE L1 -5066 979 236 3665 122 71 2 chr21 17437580 17438170 -27469400 + MER41B LTR ERV1 1 631 -4 2641 262 53 32 chr21 17438170 17438201 -27469369 - L1MCa LINE L1 -5809 236 207 2690 176 35 76 chr21 17438289 17439010 -27468560 - LTR8 LTR ERV1 0 691 1 431 228 83 67 chr21 17439443 17439623 -27467947 - L1MCa LINE L1 -5855 190 8 2761 3 3 0 chr21 17439636 17439935 -27467635 + AluYa5 SINE Alu 1 300 -11 25 31 0 0 chr21 17440437 17440469 -27467101 + AT_rich Low_complexity Low_complexity 1 32 0 181 279 33 0 chr21 17440661 17440722 -27466848 - MIR SINE MIR -63 145 83 1170 148 35 0 chr21 17441747 17441950 -27465620 - Tigger7 DNA MER2_type 0 2487 2278 2262 190 9 46 chr21 17441953 17442406 -27465164 - Tigger7 DNA MER2_type -2048 439 4 23 54 0 0 chr21 17442494 17442531 -27465039 + AT_rich Low_complexity Low_complexity 1 37 0 1323 277 56 45 chr21 17442862 17443648 -27463922 - HAL1b LINE L1 -429 919 125 279 355 34 6 chr21 17444566 17444781 -27462789 + L1ME3 LINE L1 5336 5554 -612 232 294 43 22 chr21 17444897 17444989 -27462581 + MLT1J2 LTR MaLR 51 144 -306 1269 215 94 30 chr21 17444990 17445353 -27462217 - MLT1B LTR MaLR 0 390 5 225 94 0 0 chr21 17445435 17445467 -27462103 + (CA)n Simple_repeat Simple_repeat 1 32 0 403 314 51 6 chr21 17445698 17445711 -27461859 + L1ME3 LINE L1 5678 5689 -481 2122 102 24 0 chr21 17445711 17446005 -27461565 + AluSg SINE Alu 1 301 -9 403 314 51 6 chr21 17446005 17446250 -27461320 + L1ME3 LINE L1 5689 5948 -222 25 83 0 0 chr21 17446469 17446529 -27461041 + AT_rich Low_complexity Low_complexity 1 60 0 21 0 0 0 chr21 17446610 17446631 -27460939 + AT_rich Low_complexity Low_complexity 1 21 0 2202 95 0 10 chr21 17446688 17446993 -27460577 + AluY SINE Alu 1 302 -9 250 301 179 0 chr21 17448251 17448374 -27459196 + MIR SINE MIR 118 262 0 887 234 184 29 chr21 17448503 17448991 -27458579 + LTR28 LTR ERV1 1 1232 -447 1648 177 31 26 chr21 17450176 17450526 -27457044 - L1MA4 LINE L1 -14 6286 5935 428 164 0 0 chr21 17450531 17450604 -27456966 + L1MA4 LINE L1 5868 5940 -360 245 329 22 7 chr21 17450856 17450993 -27456577 - L1ME LINE L1 -268 5902 5764 21 36 0 0 chr21 17451252 17451280 -27456290 + AT_rich Low_complexity Low_complexity 1 28 0 1526 229 86 94 chr21 17452212 17452870 -27454700 + MLT1E1 LTR MaLR 3 654 0 2615 33 3 0 chr21 17454337 17454644 -27452926 - AluY SINE Alu -3 308 1 466 234 0 0 chr21 17455077 17455171 -27452399 - AluJo SINE Alu -9 303 210 22 0 0 0 chr21 17455171 17455193 -27452377 + AT_rich Low_complexity Low_complexity 1 22 0 644 221 7 7 chr21 17455193 17455338 -27452232 - AluJo SINE Alu -167 145 1 2628 144 32 8 chr21 17456532 17457004 -27450566 - MER31A LTR ERV1 0 485 3 5142 181 25 15 chr21 17457838 17457949 -27449621 - L1PA16 LINE L1 0 6166 6058 1865 150 58 14 chr21 17457949 17458308 -27449262 - THE1C LTR MaLR 0 375 1 5142 181 25 15 chr21 17458308 17459636 -27447934 - L1PA16 LINE L1 -108 6058 4710 22 35 0 0 chr21 17459971 17460000 -27447570 + AT_rich Low_complexity Low_complexity 1 29 0 368 338 0 32 chr21 17460029 17460183 -27447387 - L2 LINE L2 0 3313 3165 735 174 38 0 chr21 17460482 17460614 -27446956 + LTR40a LTR ERVL 6 142 -377 1481 229 118 39 chr21 17460734 17460885 -27446685 + MER34 LTR ERV1 11 149 -393 2536 66 0 0 chr21 17460885 17461188 -27446382 + AluY SINE Alu 1 303 -8 1481 229 118 39 chr21 17461188 17461526 -27446044 + MER34 LTR ERV1 149 539 -3 400 234 106 76 chr21 17461632 17461802 -27445768 + LTR40b LTR ERVL 298 462 0 180 0 0 0 chr21 17462079 17462099 -27445471 + (TTTTG)n Simple_repeat Simple_repeat 1 20 0 752 144 0 53 chr21 17462099 17462231 -27445339 - FRAM SINE Alu -31 145 21 23 0 0 0 chr21 17462881 17462904 -27444666 + AT_rich Low_complexity Low_complexity 1 23 0 346 67 0 0 chr21 17463264 17463309 -27444261 - L1PA13 LINE L1 -19 6144 6100 21 57 0 0 chr21 17463829 17463864 -27443706 + AT_rich Low_complexity Low_complexity 1 35 0 194 396 126 9 chr21 17463920 17464031 -27443539 - MIR3 SINE MIR -43 165 42 505 282 34 43 chr21 17464090 17464299 -27443271 - HERVL LTR ERVL -1005 4649 4443 250 286 0 0 chr21 17464536 17464599 -27442971 - HERVL LTR ERVL -1455 4199 4137 * 1694 296 55 68 chr21 17464597 17464943 -27442627 - HERVL LTR ERVL -2882 2882 2533 2016 128 3 3 chr21 17464943 17465249 -27442321 - AluSg SINE Alu -2 308 3 1694 296 55 68 chr21 17465249 17466038 -27441532 - HERVL LTR ERVL -3231 2533 1761 1140 243 27 46 chr21 17466080 17466450 -27441120 - MLT1A1 LTR MaLR 0 365 3 660 242 258 73 chr21 17466516 17467049 -27440521 - MLT2F LTR ERVL 0 663 1 23844 40 3 0 chr21 17467880 17471601 -27435969 + L1PA5 LINE L1 2410 6146 -8 321 26 0 0 chr21 17472336 17472374 -27435196 + (TA)n Simple_repeat Simple_repeat 2 39 0 1276 258 55 68 chr21 17472410 17472935 -27434635 + MLT1E1 LTR MaLR 14 523 -101 11449 227 60 55 chr21 17472935 17473366 -27434204 - L1P4 LINE L1 -584 6284 5857 2460 71 0 0 chr21 17473366 17473677 -27433893 - AluY SINE Alu 0 311 1 11449 227 60 55 chr21 17473677 17474092 -27433478 - L1P4 LINE L1 -1011 5857 5445 492 71 0 0 chr21 17474092 17474162 -27433408 - Alu SINE Alu -5 307 238 11449 227 60 55 chr21 17474162 17474690 -27432880 - L1P4 LINE L1 -1423 5445 4921 2161 102 7 10 chr21 17474690 17474995 -27432575 + AluSx SINE Alu 2 305 -7 11449 227 60 55 chr21 17474995 17476934 -27430636 - L1P4 LINE L1 -1947 4921 2993 1915 144 0 10 chr21 17476934 17477233 -27430337 + AluSq SINE Alu 1 296 -17 11449 227 60 55 chr21 17477233 17479817 -27427753 - L1P4 LINE L1 -3875 2993 240 1576 228 29 81 chr21 17479822 17480366 -27427204 - L1 LINE L1 -3104 4461 3946 2176 154 37 19 chr21 17480398 17480770 -27426800 - MSTA LTR MaLR 0 428 50 1267 173 101 25 chr21 17480770 17481047 -27426523 - MSTA LTR MaLR 0 428 131 4491 196 21 18 chr21 17481047 17481448 -27426122 - L1 LINE L1 -6664 901 503 2135 107 0 0 chr21 17481448 17481746 -27425824 - AluSc SINE Alu -11 298 1 4491 196 21 18 chr21 17481746 17482232 -27425338 - L1 LINE L1 -7062 503 11 253 333 74 37 chr21 17482234 17482396 -27425174 + L2 LINE L2 2598 2765 -549 357 172 0 62 chr21 17482512 17482576 -27424994 + MER21B LTR ERV1 643 777 -154 328 199 66 99 chr21 17483971 17484122 -27423448 + HAL1 LINE L1 1231 1376 -1131 500 0 17 0 chr21 17484337 17484397 -27423173 + (TCTA)n Simple_repeat Simple_repeat 2 62 0 2800 229 91 40 chr21 17484484 17485287 -27422283 + MER21B LTR ERV1 19 862 -1 25 31 0 0 chr21 17485373 17485405 -27422165 + AT_rich Low_complexity Low_complexity 1 32 0 1096 84 26 0 chr21 17485635 17485790 -27421780 + L1MA1 LINE L1 6134 6292 -10 275 282 0 0 chr21 17486389 17486460 -27421110 + A-rich Low_complexity Low_complexity 2 72 0 350 229 41 8 chr21 17487090 17487212 -27420358 + (TA)n Simple_repeat Simple_repeat 1 126 0 1113 164 0 0 chr21 17487576 17487747 -27419823 - AluSg/x SINE Alu -5 307 137 343 306 8 16 chr21 17489270 17489391 -27418179 - MER94 DNA DNA -14 120 1 396 286 65 12 chr21 17489476 17489644 -27417926 - MER104 DNA Tc2 -1 179 3 29 47 0 0 chr21 17490536 17490579 -27416991 + AT_rich Low_complexity Low_complexity 1 43 0 1471 208 29 69 chr21 17490607 17491087 -27416483 - LTR37B LTR ERV1 -2 466 6 38 39 0 0 chr21 17491585 17491637 -27415933 + AT_rich Low_complexity Low_complexity 1 52 0 24 32 0 0 chr21 17491825 17491856 -27415714 + AT_rich Low_complexity Low_complexity 1 31 0 2266 114 0 0 chr21 17492097 17492404 -27415166 - AluSx SINE Alu -5 307 1 21 36 0 0 chr21 17492410 17492438 -27415132 + AT_rich Low_complexity Low_complexity 1 28 0 200 196 0 39 chr21 17492975 17493026 -27414544 + (TAA)n Simple_repeat Simple_repeat 2 50 0 277 331 36 60 chr21 17493078 17493244 -27414326 - MIR SINE MIR -81 181 20 1957 65 111 8 chr21 17493713 17493966 -27413604 + AluY SINE Alu 1 305 -6 406 0 0 0 chr21 17493966 17494011 -27413559 + (TAAA)n Simple_repeat Simple_repeat 2 148 0 483 311 92 41 chr21 17494917 17495210 -27412360 + MLT1H LTR MaLR 134 441 -108 578 251 94 100 chr21 17495246 17495704 -27411866 - LTR16A1 LTR ERVL -2 455 1 196 294 49 92 chr21 17495833 17496017 -27411553 - L2 LINE L2 -528 2786 2611 1286 225 56 22 chr21 17496090 17496450 -27411120 - MLT1A2 LTR MaLR 0 374 3 235 320 57 33 chr21 17496553 17496675 -27410895 - L2 LINE L2 -910 2404 2280 270 360 55 0 chr21 17496895 17497059 -27410511 - MIR SINE MIR -74 188 16 1282 114 4 2 chr21 17498746 17498975 -27408595 + AluSp SINE Alu 20 301 -12 21 57 0 0 chr21 17499109 17499144 -27408426 + AT_rich Low_complexity Low_complexity 1 35 0 2419 88 0 0 chr21 17499358 17499677 -27407893 - LTR14C LTR ERVK 0 587 269 683 223 108 47 chr21 17499688 17499886 -27407684 - L1MEc LINE L1 -4145 2251 2028 2477 185 96 8 chr21 17499886 17500357 -27407213 + MLT2B3 LTR ERVL 1 522 -32 940 58 26 19 chr21 17500357 17500511 -27407059 + (TCTA)n Simple_repeat Simple_repeat 2 156 0 2477 185 96 8 chr21 17500511 17500548 -27407022 + MLT2B3 LTR ERVL 522 554 0 683 223 108 47 chr21 17500548 17500645 -27406925 - L1MEc LINE L1 -4368 2028 1938 410 248 21 28 chr21 17500642 17500787 -27406783 - L1MEc LINE L1 -5571 825 682 * 1317 303 83 14 chr21 17500795 17501314 -27406256 - L1MEc LINE L1 -5795 601 47 2126 58 0 4 chr21 17501317 17501595 -27405975 + L1PA7 LINE L1 5875 6151 -3 2318 86 3 3 chr21 17502094 17502398 -27405172 + AluY SINE Alu 1 304 -7 29 78 0 0 chr21 17503047 17503111 -27404459 + AT_rich Low_complexity Low_complexity 1 64 0 1848 285 37 30 chr21 17503776 17504580 -27402990 - HERVL40 LTR ERVL -2102 3428 2562 903 250 58 66 chr21 17504581 17504929 -27402641 - HERVL40 LTR ERVL -3136 2394 2050 195 42 0 0 chr21 17504939 17504963 -27402607 + (TC)n Simple_repeat Simple_repeat 1 24 0 798 272 71 46 chr21 17504989 17505237 -27402333 - HERVL40 LTR ERVL -3963 1567 1310 2896 104 45 23 chr21 17505237 17505279 -27402291 - MLT2A2 LTR ERVL 0 453 413 333 0 0 0 chr21 17505279 17505316 -27402254 + (CA)n Simple_repeat Simple_repeat 2 38 0 2896 104 45 23 chr21 17505316 17505716 -27401854 - MLT2A2 LTR ERVL -40 413 1 798 272 71 46 chr21 17505716 17505750 -27401820 - HERVL40 LTR ERVL -4220 1310 1278 1552 214 34 26 chr21 17505772 17506111 -27401459 + L1MB5 LINE L1 5781 6125 -49 2743 146 94 14 chr21 17506111 17506598 -27400972 + MER1A DNA MER1_type 2 527 0 1552 214 34 26 chr21 17506598 17506641 -27400929 + L1MB5 LINE L1 6125 6166 -8 288 248 18 46 chr21 17507187 17507296 -27400274 - HERVL40 LTR ERVL -5424 106 1 1638 226 62 57 chr21 17507298 17507811 -27399759 - LTR40a LTR ERVL 0 519 4 1250 132 0 0 chr21 17508353 17508527 -27399043 - AluSg/x SINE Alu -10 300 127 560 59 50 10 chr21 17508635 17508736 -27398834 + GA-rich Low_complexity Low_complexity 4 108 0 225 314 40 65 chr21 17509589 17509713 -27397857 - L2 LINE L2 -16 3297 3177 1219 182 47 40 chr21 17510110 17510271 -27397299 - L1MB8 LINE L1 -6 6172 6007 2321 155 20 0 chr21 17510271 17510664 -27396906 - MER57A LTR ERV1 0 403 3 1219 182 47 40 chr21 17510664 17510799 -27396771 - L1MB8 LINE L1 -171 6007 5874 264 59 0 0 chr21 17511098 17511132 -27396438 + (TC)n Simple_repeat Simple_repeat 2 35 0 1739 148 25 3 chr21 17511133 17511416 -27396154 - AluSx SINE Alu -23 289 1 246 325 38 0 chr21 17511752 17511832 -27395738 - L2 LINE L2 -4 3268 3186 2150 160 44 42 chr21 17512007 17512271 -27395299 + Tigger2a DNA MER2_type 2 269 -2439 7382 153 32 4 chr21 17512271 17513535 -27394035 + HSMAR2 DNA Mariner 2 1300 -2 2150 160 44 42 chr21 17513535 17513702 -27393868 + Tigger2a DNA MER2_type 269 434 0 32 0 0 0 chr21 17513738 17513770 -27393800 + AT_rich Low_complexity Low_complexity 1 32 0 574 316 95 76 chr21 17514203 17514846 -27392724 + HAL1 LINE L1 272 926 -1581 24 53 0 0 chr21 17514980 17515018 -27392552 + AT_rich Low_complexity Low_complexity 1 38 0 249 307 78 10 chr21 17517535 17517727 -27389843 + HAL1 LINE L1 1913 2117 -390 2159 99 7 7 chr21 17518220 17518513 -27389057 + AluSx SINE Alu 1 293 -19 399 21 0 0 chr21 17518515 17518563 -27389007 + (CA)n Simple_repeat Simple_repeat 1 48 0 357 165 23 148 chr21 17518946 17519007 -27388563 + MER63 DNA MER1_type 901 968 -92 3351 184 24 12 chr21 17519007 17519677 -27387893 - L1MB7 LINE L1 -16 6168 5491 357 165 23 148 chr21 17519677 17519791 -27387779 + MER63 DNA MER1_type 968 1054 -6 206 322 48 35 chr21 17520036 17520263 -27387307 + L2 LINE L2 1538 1767 -1547 805 194 99 5 chr21 17520297 17520498 -27387072 - MER45R DNA AcHobo -378 1203 984 1291 223 16 0 chr21 17520501 17520752 -27386818 + L1M1 LINE L1 18 272 -7293 949 211 0 0 chr21 17521010 17521195 -27386375 + MLT1B LTR MaLR 1 185 -205 3008 160 19 4 chr21 17521198 17521730 -27385840 + L1MA5 LINE L1 5757 6296 -4 770 229 32 5 chr21 17521774 17521962 -27385608 + MLT1B LTR MaLR 192 384 -6 619 225 20 53 chr21 17521981 17522132 -27385438 - MER45 DNA AcHobo -1435 146 1 1308 209 3 46 chr21 17522415 17522722 -27384848 + AluJo SINE Alu 1 294 -18 210 278 0 0 chr21 17522812 17522866 -27384704 - MIR SINE MIR -42 220 167 2117 107 0 10 chr21 17522940 17523248 -27384322 + AluSx SINE Alu 1 305 -7 276 292 146 22 chr21 17523250 17523435 -27384135 + L2 LINE L2 2430 2637 -677 201 250 19 157 chr21 17523650 17523758 -27383812 + L2 LINE L2 2977 3069 -203 220 309 0 0 chr21 17523921 17523976 -27383594 + MIR SINE MIR 32 86 -176 244 296 0 14 chr21 17524033 17524104 -27383466 + MIR SINE MIR 161 230 -32 2704 120 21 2 chr21 17524125 17524551 -27383019 - MER57B LTR ERV1 0 434 1 13218 169 39 3 chr21 17524560 17526885 -27380685 - Tigger1 DNA MER2_type 0 2418 10 201 39 0 0 chr21 17526885 17526911 -27380659 + (TG)n Simple_repeat Simple_repeat 2 27 0 1796 208 39 25 chr21 17527347 17527769 -27379801 - MLT2B2 LTR ERVL -40 480 6 1059 255 35 19 chr21 17527877 17528191 -27379379 - MLT1H LTR MaLR -224 325 7 2320 156 34 10 chr21 17529490 17529908 -27377662 + MSTA LTR MaLR 1 428 0 232 227 0 0 chr21 17529922 17529966 -27377604 + L2 LINE L2 3270 3313 0 735 255 11 21 chr21 17530605 17530793 -27376777 + MLT1H LTR MaLR 97 282 -267 2687 35 0 0 chr21 17532409 17532719 -27374851 + AluY SINE Alu 1 310 -1 1679 196 0 0 chr21 17532735 17533026 -27374544 + AluSx SINE Alu 9 299 -13 387 41 0 0 chr21 17534625 17534674 -27372896 + (CA)n Simple_repeat Simple_repeat 2 50 0 350 291 158 0 chr21 17534683 17534848 -27372722 - MIR SINE MIR -65 197 7 230 283 141 89 chr21 17535146 17535337 -27372233 - MIR SINE MIR -59 203 3 975 245 13 39 chr21 17535925 17535968 -27371602 - L1MD3 LINE L1 -19 7976 7933 541 89 13 0 chr21 17535968 17536047 -27371523 + MADE1 DNA Mariner 1 80 0 975 245 13 39 chr21 17536047 17536201 -27371369 - L1MD3 LINE L1 -62 7933 7787 2439 72 0 3 chr21 17536201 17536507 -27371063 - AluY SINE Alu -6 305 1 975 245 13 39 chr21 17536507 17536618 -27370952 - L1MD3 LINE L1 -208 7787 7675 22 80 0 0 chr21 17536779 17536829 -27370741 + AT_rich Low_complexity Low_complexity 1 50 0 2573 118 13 5 chr21 17537045 17537417 -27370153 + THE1C LTR MaLR 1 375 0 340 246 33 25 chr21 17537919 17538041 -27369529 + GA-rich Low_complexity Low_complexity 1 123 0 220 242 30 0 chr21 17539790 17539856 -27367714 + (TATATG)n Simple_repeat Simple_repeat 3 70 0 284 349 97 11 chr21 17540850 17541025 -27366545 - L2 LINE L2 -454 2860 2671 241 349 155 30 chr21 17541569 17541833 -27365737 + L2 LINE L2 2378 2674 -640 1359 266 128 6 chr21 17542115 17542638 -27364932 - L1MB7 LINE L1 -1 6183 5597 1301 165 57 0 chr21 17542638 17542868 -27364702 - AluJb SINE Alu -64 248 6 2217 242 23 29 chr21 17542872 17543834 -27363736 - L1MB7 LINE L1 -574 5604 4656 304 226 19 19 chr21 17544236 17544342 -27363228 + (TA)n Simple_repeat Simple_repeat 2 107 0 2010 140 56 25 chr21 17544624 17544981 -27362589 - MER39 LTR ERV1 0 707 340 305 182 12 4 chr21 17544982 17545062 -27362508 - MER39 LTR ERV1 -418 254 154 589 157 67 129 chr21 17545065 17545243 -27362327 + THE1C LTR MaLR 3 169 -206 2428 43 3 0 chr21 17545247 17545547 -27362023 + L1PA4 LINE L1 5852 6152 -3 209 122 24 0 chr21 17545576 17545617 -27361953 + (CAAA)n Simple_repeat Simple_repeat 2 43 0 1054 123 29 44 chr21 17545619 17545823 -27361747 + THE1C LTR MaLR 175 375 0 1045 136 114 5 chr21 17545823 17546006 -27361564 - MER39 LTR ERV1 -504 203 1 264 30 0 0 chr21 17546576 17546609 -27360961 + (CAAA)n Simple_repeat Simple_repeat 2 34 0 27 73 0 0 chr21 17548946 17549001 -27358569 + AT_rich Low_complexity Low_complexity 1 55 0 26 0 0 0 chr21 17549960 17549986 -27357584 + AT_rich Low_complexity Low_complexity 1 26 0 368 268 39 46 chr21 17550198 17550351 -27357219 + L2 LINE L2 2226 2377 -937 294 29 0 0 chr21 17550954 17550989 -27356581 + (TC)n Simple_repeat Simple_repeat 2 36 0 * 321 68 0 0 chr21 17550988 17551032 -27356538 + (TG)n Simple_repeat Simple_repeat 1 44 0 5985 194 58 35 chr21 17551034 17552138 -27355432 - L1MC3 LINE L1 -743 5403 4326 369 0 0 0 chr21 17552138 17552179 -27355391 + (TTTA)n Simple_repeat Simple_repeat 3 43 0 1985 102 7 18 chr21 17552182 17552467 -27355103 - AluSp SINE Alu -31 282 1 5985 194 58 35 chr21 17552467 17552973 -27354597 - L1MC3 LINE L1 -456 5690 5197 564 191 23 30 chr21 17552992 17553123 -27354447 - L1MCb LINE L1 -5742 303 174 3051 234 19 22 chr21 17553333 17554159 -27353411 + L1MC3 LINE L1 6153 6329 -4 1854 206 71 64 chr21 17554627 17555176 -27352394 + MLT2B3 LTR ERVL 1 553 -1 28 0 0 0 chr21 17557794 17557822 -27349748 + AT_rich Low_complexity Low_complexity 1 28 0 2182 138 36 17 chr21 17557826 17558238 -27349332 - L1MA3 LINE L1 -6 6299 5880 21 57 0 0 chr21 17558652 17558687 -27348883 + AT_rich Low_complexity Low_complexity 1 35 0 1556 192 20 10 chr21 17560567 17560864 -27346706 - AluJo SINE Alu -12 300 1 22 0 0 0 chr21 17561914 17561936 -27345634 + AT_rich Low_complexity Low_complexity 1 22 0 307 260 39 29 chr21 17562835 17562939 -27344631 + MIR3 SINE MIR 67 171 -37 384 338 76 33 chr21 17564917 17565313 -27342257 - L1MC5 LINE L1 -34 7927 7515 278 388 8 0 chr21 17565448 17565569 -27342001 - L3 LINE CR1 -37 1540 1419 3354 224 25 58 chr21 17565776 17567400 -27340170 - L1MC1 LINE L1 -105 6228 4653 5687 103 0 0 chr21 17567505 17567696 -27339874 - L1PB1 LINE L1 0 6151 5961 2002 138 3 0 chr21 17567696 17567993 -27339577 - AluSp SINE Alu -15 298 1 5687 103 0 0 chr21 17567993 17568806 -27338764 - L1PB1 LINE L1 -189 5962 5161 7515 213 20 1 chr21 17568822 17570113 -27337457 + L1 LINE L1 2377 3709 -2437 213 65 0 0 chr21 17570113 17570144 -27337426 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 7515 213 20 1 chr21 17570144 17570539 -27337031 + L1 LINE L1 3709 4095 -2051 186 103 0 0 chr21 17571834 17571863 -27335707 + (TA)n Simple_repeat Simple_repeat 1 29 0 201 239 0 0 chr21 17572182 17572228 -27335342 + A-rich Low_complexity Low_complexity 3 48 0 180 0 0 0 chr21 17573158 17573178 -27334392 + (TA)n Simple_repeat Simple_repeat 1 20 0 185 156 0 22 chr21 17573244 17573289 -27334281 + (TA)n Simple_repeat Simple_repeat 1 44 0 232 246 101 43 chr21 17574633 17574771 -27332799 + MLT1K LTR MaLR 396 541 -47 23 0 0 0 chr21 17575011 17575034 -27332536 + AT_rich Low_complexity Low_complexity 1 23 0 843 239 100 27 chr21 17575613 17575872 -27331698 + LTR50 LTR ERVL 4 281 -514 212 143 24 0 chr21 17576098 17576140 -27331430 + (CATA)n Simple_repeat Simple_repeat 4 46 0 2835 206 15 18 chr21 17576143 17576744 -27330826 + MER6A DNA MER2_type 6 604 -1 277 136 59 34 chr21 17576744 17576862 -27330708 + (TA)n Simple_repeat Simple_repeat 2 122 0 * 342 168 16 79 chr21 17576774 17577010 -27330560 + (TATAA)n Simple_repeat Simple_repeat 1 221 0 1446 214 84 9 chr21 17577017 17577349 -27330221 - MLT1A1 LTR MaLR 0 365 9 419 188 0 8 chr21 17577406 17577534 -27330036 + (TA)n Simple_repeat Simple_repeat 2 128 0 435 19 0 0 chr21 17578884 17578936 -27328634 + (CA)n Simple_repeat Simple_repeat 1 52 0 34 96 0 0 chr21 17579171 17579275 -27328295 + AT_rich Low_complexity Low_complexity 1 104 0 1344 244 98 34 chr21 17579835 17580045 -27327525 + MLT1C LTR MaLR 1 196 -271 2180 108 7 0 chr21 17580045 17580350 -27327220 - AluSx SINE Alu -5 307 1 1344 244 98 34 chr21 17580350 17580578 -27326992 + MLT1C LTR MaLR 196 467 0 250 232 30 20 chr21 17580876 17580975 -27326595 + (TAAAG)n Simple_repeat Simple_repeat 3 102 0 23 0 0 0 chr21 17581202 17581225 -27326345 + AT_rich Low_complexity Low_complexity 1 23 0 2358 178 34 2 chr21 17581969 17582412 -27325158 + MSTB2 LTR MaLR 1 457 0 240 35 0 0 chr21 17582576 17582605 -27324965 + (TG)n Simple_repeat Simple_repeat 2 30 0 211 176 0 0 chr21 17582804 17582838 -27324732 + (CAT)n Simple_repeat Simple_repeat 3 36 0 4171 169 32 6 chr21 17582839 17583617 -27323953 - L1MC1 LINE L1 -197 6136 5341 261 367 25 8 chr21 17583855 17583975 -27323595 - LTR67 LTR ERVL -356 201 80 246 208 0 0 chr21 17584901 17584954 -27322616 + (TA)n Simple_repeat Simple_repeat 2 54 0 243 0 0 0 chr21 17585882 17585909 -27321661 + (TG)n Simple_repeat Simple_repeat 2 28 0 21 36 0 0 chr21 17586312 17586340 -27321230 + AT_rich Low_complexity Low_complexity 1 28 0 762 243 75 20 chr21 17587578 17588019 -27319551 + Zaphod DNA AcHobo 511 975 -3056 677 229 116 48 chr21 17588083 17588455 -27319115 + Zaphod DNA AcHobo 3626 4022 -9 229 313 107 71 chr21 17588732 17589042 -27318528 + MLT1K LTR MaLR 190 510 -78 301 302 153 52 chr21 17589473 17589658 -27317912 - L2 LINE L2 -186 3127 2901 1989 158 48 22 chr21 17589658 17590013 -27317557 + THE1B LTR MaLR 1 364 0 301 302 153 52 chr21 17590013 17590115 -27317455 - L2 LINE L2 -412 2901 2811 1927 198 19 3 chr21 17590361 17590720 -27316850 - MLT1A1 LTR MaLR 0 365 1 376 299 124 44 chr21 17590978 17591342 -27316228 - MLT1J1 LTR MaLR -33 413 21 25 0 0 0 chr21 17592473 17592498 -27315072 + AT_rich Low_complexity Low_complexity 1 25 0 1431 134 5 0 chr21 17592589 17592805 -27314765 - AluSg/x SINE Alu 0 312 96 374 214 51 20 chr21 17592896 17592994 -27314576 - MLT1J2 LTR MaLR -345 105 5 2662 208 71 79 chr21 17595097 17595873 -27311697 - MER21A LTR ERV1 -26 905 136 724 169 36 97 chr21 17595857 17596052 -27311518 - MER21A LTR ERV1 -736 195 13 * 29 70 0 0 chr21 17596679 17596736 -27310834 + AT_rich Low_complexity Low_complexity 1 57 0 259 310 75 60 chr21 17598154 17598390 -27309180 - L1ME4a LINE L1 -195 5926 5680 2161 168 16 45 chr21 17598390 17598837 -27308733 - Tigger2a DNA MER2_type 0 434 1 259 310 75 60 chr21 17598837 17599000 -27308570 - L1ME4a LINE L1 -441 5680 5521 1200 263 67 34 chr21 17599136 17599494 -27308076 - MER82 DNA MER2_type -3 650 281 941 215 5 0 chr21 17599518 17599704 -27307866 + MER2 DNA MER2_type 23 209 -136 281 204 19 0 chr21 17599734 17599788 -27307782 + MER2 DNA MER2_type 269 323 -22 1491 185 0 11 chr21 17599804 17600074 -27307496 - MER82 DNA MER2_type -373 280 14 290 328 99 68 chr21 17600112 17600402 -27307168 + L1MEd LINE L1 115 394 -5725 2672 29 7 0 chr21 17600402 17600710 -27306860 + AluY SINE Alu 2 311 0 290 328 99 68 chr21 17600710 17600962 -27306608 + L1MEd LINE L1 394 674 -5445 34 65 0 0 chr21 17601062 17601124 -27306446 + AT_rich Low_complexity Low_complexity 1 62 0 304 320 115 51 chr21 17601172 17601425 -27306145 + L1MEd LINE L1 989 1257 -4862 1927 148 0 13 chr21 17601616 17601914 -27305656 + AluSx SINE Alu 1 294 -18 294 164 0 0 chr21 17601924 17601979 -27305591 + (CA)n Simple_repeat Simple_repeat 2 56 0 23 68 0 0 chr21 17602181 17602225 -27305345 + AT_rich Low_complexity Low_complexity 1 44 0 284 102 20 0 chr21 17602742 17602791 -27304779 + (TCTA)n Simple_repeat Simple_repeat 4 53 0 228 301 84 75 chr21 17603000 17603213 -27304357 + LTR40a LTR ERVL 113 327 -192 204 135 0 0 chr21 17603376 17603413 -27304157 + (TTCC)n Simple_repeat Simple_repeat 3 39 0 1459 86 14 32 chr21 17603413 17603634 -27303936 - AluSx SINE Alu -32 280 64 360 331 118 6 chr21 17603634 17604117 -27303453 + L1M4 LINE L1 3911 4447 -1699 27 29 0 0 chr21 17604126 17604160 -27303410 + AT_rich Low_complexity Low_complexity 1 34 0 391 354 113 9 chr21 17604206 17604551 -27303019 + L1M4 LINE L1 4560 4940 -1206 22 0 0 0 chr21 17604651 17604673 -27302897 + AT_rich Low_complexity Low_complexity 1 22 0 262 246 0 0 chr21 17604889 17604946 -27302624 - MIR SINE MIR -70 192 136 2162 95 0 10 chr21 17606130 17606426 -27301144 + AluSx SINE Alu 1 293 -19 2148 92 3 0 chr21 17607008 17607291 -27300279 + AluSg SINE Alu 1 284 -26 432 0 0 0 chr21 17607291 17607339 -27300231 + (CATA)n Simple_repeat Simple_repeat 2 49 0 277 176 12 35 chr21 17607590 17607675 -27299895 + CT-rich Low_complexity Low_complexity 2 84 0 340 276 0 0 chr21 17607838 17607914 -27299656 + L2 LINE L2 3238 3313 0 2201 161 31 0 chr21 17608070 17608461 -27299109 + L1PB4 LINE L1 5754 6156 0 234 359 80 18 chr21 17608538 17608859 -27298711 + L2 LINE L2 2828 3217 -96 502 186 0 110 chr21 17609104 17609249 -27298321 - MER3 DNA MER1_type 0 209 81 1562 195 96 3 chr21 17609319 17609653 -27297917 + MLT1A1 LTR MaLR 1 365 0 1388 235 104 46 chr21 17610309 17610790 -27296780 + MER67D LTR ERV1 3 511 -3 25 0 0 0 chr21 17610867 17610892 -27296678 + AT_rich Low_complexity Low_complexity 1 25 0 410 165 0 12 chr21 17611199 17611284 -27296286 + CT-rich Low_complexity Low_complexity 3 86 0 243 0 0 0 chr21 17611302 17611329 -27296241 + (TG)n Simple_repeat Simple_repeat 1 27 0 251 231 132 33 chr21 17612651 17612742 -27294828 + LTR48 LTR ERV1 353 452 -335 5757 129 21 39 chr21 17612742 17614239 -27293331 + L1PA10 LINE L1 2147 3670 -2498 312 27 0 0 chr21 17614239 17614276 -27293294 + (CAA)n Simple_repeat Simple_repeat 3 39 0 5757 129 21 39 chr21 17614276 17616698 -27290872 + L1PA10 LINE L1 3670 6165 -3 493 285 54 62 chr21 17617540 17617782 -27289788 + L1MC4 LINE L1 6746 6985 -1057 25 31 0 0 chr21 17618167 17618199 -27289371 + AT_rich Low_complexity Low_complexity 1 32 0 23 0 0 0 chr21 17619172 17619195 -27288375 + AT_rich Low_complexity Low_complexity 1 23 0 23 54 0 0 chr21 17619523 17619560 -27288010 + AT_rich Low_complexity Low_complexity 1 37 0 542 159 23 15 chr21 17620722 17620854 -27286716 + CT-rich Low_complexity Low_complexity 2 134 0 305 117 17 0 chr21 17621014 17621074 -27286496 + (TA)n Simple_repeat Simple_repeat 2 62 0 21 57 0 0 chr21 17621255 17621290 -27286280 + AT_rich Low_complexity Low_complexity 1 35 0 238 228 178 40 chr21 17622330 17622431 -27285139 + L2 LINE L2 3198 3312 -1 22 56 0 0 chr21 17622601 17622637 -27284933 + AT_rich Low_complexity Low_complexity 1 36 0 321 185 0 0 chr21 17623373 17623438 -27284132 + GA-rich Low_complexity Low_complexity 3 67 0 1917 188 6 0 chr21 17624917 17625258 -27282312 + MER61A LTR ERV1 1 343 0 219 286 0 0 chr21 17626553 17626616 -27280954 + (CATA)n Simple_repeat Simple_repeat 3 65 0 1881 153 3 13 chr21 17626648 17626962 -27280608 - AluSx SINE Alu -1 311 1 28 61 0 0 chr21 17627458 17627507 -27280063 + AT_rich Low_complexity Low_complexity 1 49 0 584 292 135 0 chr21 17627915 17628093 -27279477 + MER119 DNA MER1_type 4 205 -378 851 176 35 81 chr21 17628108 17628287 -27279283 + MER119 DNA MER1_type 329 494 -89 2136 126 7 7 chr21 17628287 17628589 -27278981 - AluSx SINE Alu -8 304 3 851 176 35 81 chr21 17628589 17628670 -27278900 + MER119 DNA MER1_type 494 577 -6 1648 217 9 19 chr21 17628975 17629369 -27278201 - MER65C LTR ERV1 -58 512 3 300 288 101 35 chr21 17629413 17629611 -27277959 + MLT1J LTR MaLR 1 211 -300 1551 196 3 25 chr21 17629922 17630238 -27277332 - AluJb SINE Alu -2 310 2 222 146 21 0 chr21 17630634 17630682 -27276888 + (TA)n Simple_repeat Simple_repeat 2 50 0 1427 239 98 25 chr21 17630893 17631291 -27276279 + MLT1F1 LTR MaLR 1 427 -140 23 33 0 0 chr21 17632497 17632527 -27275043 + AT_rich Low_complexity Low_complexity 1 30 0 27 62 0 0 chr21 17633448 17633496 -27274074 + AT_rich Low_complexity Low_complexity 1 48 0 219 300 14 0 chr21 17633775 17633784 -27273786 + (TATATG)n Simple_repeat Simple_repeat 4 11 -63 189 0 0 0 chr21 17633784 17633805 -27273765 + (CA)n Simple_repeat Simple_repeat 2 22 0 219 300 14 0 chr21 17633805 17633865 -27273705 + (TATATG)n Simple_repeat Simple_repeat 11 74 0 1101 131 0 0 chr21 17633866 17634042 -27273528 + (TA)n Simple_repeat Simple_repeat 1 176 0 1749 161 64 25 chr21 17634042 17634402 -27273168 - THE1C LTR MaLR -1 374 1 544 295 53 0 chr21 17634490 17634717 -27272853 + L1ME LINE L1 3672 3910 -2236 1063 138 35 42 chr21 17634718 17635002 -27272568 - THE1C LTR MaLR 0 375 1 5768 154 9 40 chr21 17635002 17636009 -27271561 - THE1C-int LTR MaLR 0 1580 605 850 309 25 37 chr21 17636055 17636463 -27271107 + L1ME LINE L1 3943 4345 -1801 599 242 23 48 chr21 17636470 17636734 -27270836 + L1ME LINE L1 5362 5614 -557 24 32 0 0 chr21 17637280 17637311 -27270259 + AT_rich Low_complexity Low_complexity 1 31 0 23 0 0 0 chr21 17638046 17638069 -27269501 + AT_rich Low_complexity Low_complexity 1 23 0 21 36 0 0 chr21 17639149 17639177 -27268393 + AT_rich Low_complexity Low_complexity 1 28 0 449 196 34 7 chr21 17639773 17639889 -27267681 - MLT1F1 LTR MaLR 0 567 474 1546 230 71 29 chr21 17642941 17643004 -27264566 - MLT2B1 LTR ERVL 0 515 456 369 43 0 0 chr21 17643004 17643051 -27264519 + (CA)n Simple_repeat Simple_repeat 2 48 0 1546 230 71 29 chr21 17643051 17643496 -27264074 - MLT2B1 LTR ERVL -59 456 1 211 192 39 0 chr21 17643683 17643735 -27263835 + (CTTAA)n Simple_repeat Simple_repeat 4 57 0 22 35 0 0 chr21 17643833 17643862 -27263708 + AT_rich Low_complexity Low_complexity 1 29 0 276 208 65 52 chr21 17644698 17644775 -27262795 - L2 LINE L2 0 3313 3236 1656 192 16 0 chr21 17645407 17645592 -27261978 - AluJb SINE Alu 0 312 119 252 0 0 0 chr21 17645592 17645620 -27261950 + (TTA)n Simple_repeat Simple_repeat 2 29 0 1656 192 16 0 chr21 17645620 17645741 -27261829 - AluJb SINE Alu -193 119 1 371 349 147 18 chr21 17646078 17646419 -27261151 + L2 LINE L2 2925 3309 -4 21 36 0 0 chr21 17646399 17646427 -27261143 + AT_rich Low_complexity Low_complexity 1 28 0 * 2740 10 0 3 chr21 17646615 17646923 -27260647 + AluYa5 SINE Alu 1 307 -4 4674 207 54 31 chr21 17647219 17648408 -27259162 - L1MC3 LINE L1 0 7785 6570 300 183 0 0 chr21 17648412 17648505 -27259065 + (TA)n Simple_repeat Simple_repeat 2 94 0 859 249 40 16 chr21 17648509 17648762 -27258808 - L1MC3 LINE L1 -1139 6646 6388 2959 251 101 44 chr21 17648796 17649576 -27257994 - L1MCb LINE L1 -3942 2803 2069 2674 29 0 0 chr21 17649576 17649882 -27257688 + AluYb8 SINE Alu 1 306 -12 2959 251 101 44 chr21 17649882 17650101 -27257469 - L1MCb LINE L1 -4676 2069 1864 180 0 0 0 chr21 17650101 17650121 -27257449 + (TTTTG)n Simple_repeat Simple_repeat 1 20 0 2959 251 101 44 chr21 17650121 17650268 -27257302 - L1MCb LINE L1 -4881 1864 1727 1540 138 0 0 chr21 17650268 17650485 -27257085 - AluSg/x SINE Alu -19 293 77 2959 251 101 44 chr21 17650485 17651063 -27256507 - L1MCb LINE L1 -5018 1727 1183 1940 137 3 25 chr21 17651063 17651377 -27256193 + AluSx SINE Alu 1 307 -5 2959 251 101 44 chr21 17651377 17652221 -27255349 - L1MCb LINE L1 -5562 1183 42 1956 150 34 47 chr21 17653880 17654093 -27253477 - THE1C LTR MaLR 0 375 168 2054 121 17 3 chr21 17654093 17654382 -27253188 + AluSx SINE Alu 3 295 -17 1956 150 34 47 chr21 17654382 17654548 -27253022 - THE1C LTR MaLR -207 168 1 23 0 0 0 chr21 17655086 17655109 -27252461 + AT_rich Low_complexity Low_complexity 1 23 0 2273 94 0 7 chr21 17659678 17659975 -27247595 + AluSg SINE Alu 3 297 -13 2056 143 0 0 chr21 17660630 17660937 -27246633 - AluSp SINE Alu -6 307 1 232 341 24 24 chr21 17661003 17661170 -27246400 - MLT1L LTR MaLR -312 303 137 191 303 40 13 chr21 17661271 17661347 -27246223 + MIR SINE MIR 167 244 -18 1138 229 26 105 chr21 17663166 17663531 -27244039 + L1M4 LINE L1 2724 3028 -3118 1080 151 0 6 chr21 17663531 17663697 -27243873 + U1 snRNA snRNA 1 165 0 1138 229 26 105 chr21 17663697 17663911 -27243659 + L1M4 LINE L1 3028 3257 -2889 248 240 27 0 chr21 17663914 17663989 -27243581 - L1MC4 LINE L1 -1352 6690 6614 293 222 0 8 chr21 17664019 17664145 -27243425 + (TA)n Simple_repeat Simple_repeat 2 126 0 225 300 0 0 chr21 17664151 17664241 -27243329 - L1MC4 LINE L1 -1339 6703 6614 306 138 0 0 chr21 17664241 17664299 -27243271 + (TA)n Simple_repeat Simple_repeat 2 59 0 225 300 0 0 chr21 17664305 17664395 -27243175 - L1MC4 LINE L1 -1339 6703 6614 1314 130 139 196 chr21 17664409 17664832 -27242738 - MER4A LTR ERV1 -5 659 261 452 183 0 12 chr21 17664833 17664915 -27242655 - MER4A LTR ERV1 -567 97 17 1281 303 100 4 chr21 17664949 17665820 -27241750 + L1M4 LINE L1 3262 4261 -1885 2200 116 0 0 chr21 17665830 17666140 -27241430 + AluSg SINE Alu 1 310 0 2548 276 25 10 chr21 17666691 17667607 -27239963 + L1M4 LINE L1 2211 3140 -3006 1972 103 41 14 chr21 17668059 17668350 -27239220 - AluSx SINE Alu -13 299 1 189 74 0 0 chr21 17668452 17668479 -27239091 + (TAAA)n Simple_repeat Simple_repeat 3 29 0 28 71 0 0 chr21 17669791 17669847 -27237723 + AT_rich Low_complexity Low_complexity 1 56 0 395 358 74 42 chr21 17670487 17670772 -27236798 + L1MEd LINE L1 124 417 -5702 2207 100 3 7 chr21 17671041 17671350 -27236220 - AluSg SINE Alu -2 308 1 215 159 23 0 chr21 17671526 17671570 -27236000 + A-rich Low_complexity Low_complexity 2 46 0 403 312 37 70 chr21 17671626 17671841 -27235729 - LTR16A1 LTR ERVL -2 455 248 297 320 62 0 chr21 17672172 17672350 -27235220 + L1MEd LINE L1 2203 2391 -3738 1297 289 87 47 chr21 17672477 17673475 -27234095 - L1ME3A LINE L1 -4 6166 5129 26 74 0 0 chr21 17673544 17673598 -27233972 + AT_rich Low_complexity Low_complexity 1 54 0 1522 198 3 20 chr21 17673598 17673891 -27233679 - AluJo SINE Alu -24 288 1 632 285 78 50 chr21 17673981 17674827 -27232743 - L1ME3A LINE L1 -1250 4896 4027 1047 200 81 10 chr21 17674876 17675186 -27232384 + L1MEd LINE L1 2960 3291 -2838 1629 203 25 6 chr21 17675210 17675570 -27232000 + L1MEd LINE L1 3657 4023 -2106 21 57 0 0 chr21 17675571 17675606 -27231964 + AT_rich Low_complexity Low_complexity 1 35 0 319 344 78 0 chr21 17675720 17675848 -27231722 + MIR SINE MIR 54 191 -71 281 26 26 0 chr21 17675850 17675888 -27231682 + (TCTA)n Simple_repeat Simple_repeat 4 42 0 22 70 0 0 chr21 17676496 17676539 -27231031 + AT_rich Low_complexity Low_complexity 1 43 0 1467 140 27 102 chr21 17676741 17677076 -27230494 - AluYb8 SINE Alu -8 310 1 4045 117 14 11 chr21 17681113 17681755 -27225815 - L1PA13 LINE L1 0 6163 5520 372 47 31 16 chr21 17682844 17682908 -27224662 + (TAGA)n Simple_repeat Simple_repeat 2 66 0 1134 132 0 0 chr21 17683515 17683682 -27223888 + AluSg/x SINE Alu 131 297 -13 282 188 0 0 chr21 17683725 17683773 -27223797 + MLT1F LTR MaLR 489 536 -6 25 0 0 0 chr21 17684882 17684907 -27222663 + AT_rich Low_complexity Low_complexity 1 25 0 180 77 0 0 chr21 17685271 17685297 -27222273 + (TAGA)n Simple_repeat Simple_repeat 1 26 0 31 58 0 0 chr21 17685336 17685388 -27222182 + AT_rich Low_complexity Low_complexity 1 52 0 207 0 0 0 chr21 17685903 17685926 -27221644 + (TA)n Simple_repeat Simple_repeat 1 23 0 23 0 0 0 chr21 17686339 17686362 -27221208 + AT_rich Low_complexity Low_complexity 1 23 0 458 335 72 69 chr21 17686809 17687099 -27220471 + L2 LINE L2 1142 1432 -1882 654 346 82 16 chr21 17687106 17687473 -27220097 + L2 LINE L2 2053 2443 -871 510 269 60 25 chr21 17687501 17687771 -27219799 + MLT1J1 LTR MaLR 40 322 -128 337 342 109 45 chr21 17687898 17688398 -27219172 + L2 LINE L2 2500 3041 -272 237 275 133 32 chr21 17688575 17688865 -27218705 - L1ME LINE L1 -539 5631 5319 5146 153 22 35 chr21 17689227 17690377 -27217193 + L1PA15 LINE L1 5007 6152 -13 2095 127 7 0 chr21 17690514 17690813 -27216757 - AluSx SINE Alu -11 301 1 441 177 25 0 chr21 17690833 17690912 -27216658 - AluY SINE Alu -16 295 215 388 285 54 16 chr21 17692084 17692270 -27215300 - MER46C DNA MER2_type -145 193 1 360 350 68 51 chr21 17692472 17692900 -27214670 - L1MEc LINE L1 -4641 1755 1321 469 299 19 33 chr21 17693130 17693333 -27214237 - L1ME2 LINE L1 -9 6155 5954 1623 226 8 8 chr21 17693333 17693696 -27213874 - MLT1A1 LTR MaLR 0 365 3 28 48 0 0 chr21 17693732 17693774 -27213796 + AT_rich Low_complexity Low_complexity 1 42 0 2744 19 0 0 chr21 17693801 17694114 -27213456 + AluYb8 SINE Alu 1 313 -5 6996 40 1 0 chr21 17694276 17695120 -27212450 - L1PA4 LINE L1 -1 6154 5310 4890 34 3 0 chr21 17695115 17695712 -27211858 + L1PA4 LINE L1 4711 5309 -837 * 667 208 8 0 chr21 17696420 17696540 -27211030 - FLAM_A SINE Alu -16 126 6 21 36 0 0 chr21 17697137 17697165 -27210405 + AT_rich Low_complexity Low_complexity 1 28 0 697 304 39 0 chr21 17698033 17698240 -27209330 + MER58C DNA MER1_type 1 215 0 1939 221 34 23 chr21 17698252 17698782 -27208788 - L1MB8 LINE L1 0 6178 5643 1025 249 132 15 chr21 17698794 17699187 -27208383 - L1MB8 LINE L1 -801 5345 4907 667 176 210 63 chr21 17702332 17702570 -27205000 + MLT1A1 LTR MaLR 1 273 -92 432 254 45 9 chr21 17702947 17703116 -27204454 + FLAM_A SINE Alu 1 173 0 1472 324 101 29 chr21 17704225 17705291 -27202279 + L2 LINE L2 2061 3212 -101 1851 233 75 60 chr21 17705291 17705896 -27201674 - MLT1E2 LTR MaLR 0 626 2 464 335 80 65 chr21 17706592 17707206 -27200364 - L2 LINE L2 -117 3196 2567 25 31 0 0 chr21 17707344 17707376 -27200194 + AT_rich Low_complexity Low_complexity 1 32 0 25 51 0 0 chr21 17708846 17708885 -27198685 + AT_rich Low_complexity Low_complexity 1 39 0 1576 187 26 0 chr21 17708885 17709158 -27198412 - AluJo SINE Alu -25 287 8 23 0 0 0 chr21 17711440 17711463 -27196107 + AT_rich Low_complexity Low_complexity 1 23 0 271 293 9 19 chr21 17711469 17711575 -27195995 + GA-rich Low_complexity Low_complexity 2 106 0 21 0 0 0 chr21 17711886 17711907 -27195663 + AT_rich Low_complexity Low_complexity 1 21 0 582 198 26 9 chr21 17711909 17712025 -27195545 - FLAM_A SINE Alu -15 118 1 254 336 103 26 chr21 17712255 17712526 -27195044 + L3 LINE CR1 1212 1503 -74 2031 148 0 0 chr21 17712635 17712933 -27194637 + AluSx SINE Alu 3 300 -12 22 0 0 0 chr21 17713063 17713085 -27194485 + AT_rich Low_complexity Low_complexity 1 22 0 430 291 156 48 chr21 17713426 17713951 -27193619 - MLT1L LTR MaLR -4 611 30 24 53 0 0 chr21 17715044 17715082 -27192488 + AT_rich Low_complexity Low_complexity 1 38 0 353 181 49 62 chr21 17715161 17715305 -27192265 - MER69 DNA AcHobo -7 2519 2378 21 36 0 0 chr21 17715774 17715802 -27191768 + AT_rich Low_complexity Low_complexity 1 28 0 1497 175 45 78 chr21 17717103 17717502 -27190068 - MLT1B LTR MaLR 0 390 5 180 200 0 0 chr21 17717632 17717672 -27189898 + (CATA)n Simple_repeat Simple_repeat 4 43 0 24 0 0 0 chr21 17717869 17717893 -27189677 + AT_rich Low_complexity Low_complexity 1 24 0 2271 89 3 3 chr21 17718335 17718639 -27188931 + AluSp SINE Alu 1 304 -9 1868 188 9 6 chr21 17718935 17719280 -27188290 - MER7A DNA MER2_type -1 345 2 260 242 0 16 chr21 17720227 17720289 -27187281 - MLT2D LTR ERVL -353 61 1 923 237 40 18 chr21 17721364 17721588 -27185982 + MLT2B1 LTR ERVL 1 229 -291 185 0 40 0 chr21 17721592 17721617 -27185953 + (TC)n Simple_repeat Simple_repeat 1 26 0 261 246 14 14 chr21 17721636 17721705 -27185865 + MLT2B1 LTR ERVL 386 454 -66 405 81 0 0 chr21 17721705 17721767 -27185803 + (TCTA)n Simple_repeat Simple_repeat 4 65 0 258 136 0 0 chr21 17723655 17723699 -27183871 + (CA)n Simple_repeat Simple_repeat 1 44 0 2311 156 4 31 chr21 17723777 17724227 -27183343 + L1MA4A LINE L1 5864 6301 -2 220 246 0 16 chr21 17725434 17725495 -27182075 + (TAAA)n Simple_repeat Simple_repeat 1 60 0 26 50 0 0 chr21 17725968 17726008 -27181562 + AT_rich Low_complexity Low_complexity 1 40 0 315 0 0 0 chr21 17726586 17726621 -27180949 + (CA)n Simple_repeat Simple_repeat 2 36 0 288 0 0 0 chr21 17726645 17726677 -27180893 + (CATATA)n Simple_repeat Simple_repeat 5 36 0 873 248 75 28 chr21 17726693 17726967 -27180603 + L1MC4 LINE L1 6722 7011 -1031 1653 188 33 18 chr21 17726967 17727049 -27180521 - MER2 DNA MER2_type 0 344 265 2251 101 0 16 chr21 17727049 17727367 -27180203 + AluSp SINE Alu 1 313 0 1653 188 33 18 chr21 17727367 17727620 -27179950 - MER2 DNA MER2_type -79 265 4 575 236 0 0 chr21 17727805 17727915 -27179655 + Tigger3(Golem) DNA MER2_type 2919 3028 -1 232 190 40 10 chr21 17728065 17728165 -27179405 + (TA)n Simple_repeat Simple_repeat 1 103 0 296 355 47 33 chr21 17728945 17729156 -27178414 - MLT1J LTR MaLR -115 396 183 254 302 146 40 chr21 17729560 17729937 -27177633 - HAL1 LINE L1 -860 1647 1231 1793 178 98 25 chr21 17729965 17730364 -27177206 + MSTA LTR MaLR 1 428 0 8492 161 6 49 chr21 17730366 17730741 -27176829 + MSTA-int LTR MaLR 3 393 -1187 2187 81 0 3 chr21 17730741 17731052 -27176518 - AluY SINE Alu 0 310 1 8492 161 6 49 chr21 17731052 17732325 -27175245 + MSTA-int LTR MaLR 393 1580 0 1863 157 152 11 chr21 17732325 17732700 -27174870 + MSTA LTR MaLR 1 428 0 1436 184 92 3 chr21 17733981 17734297 -27173273 + MER2 DNA MER2_type 1 344 0 276 273 66 16 chr21 17734523 17734644 -27172926 + MIR SINE MIR 78 204 -58 34 55 0 0 chr21 17734714 17734769 -27172801 + AT_rich Low_complexity Low_complexity 1 55 0 326 398 59 0 chr21 17735605 17735723 -27171847 - L2 LINE L2 0 3272 3148 2472 59 3 0 chr21 17735870 17736175 -27171395 - AluY SINE Alu -5 306 1 280 361 105 21 chr21 17736241 17736432 -27171138 - MIR SINE MIR -8 254 48 2054 203 3 0 chr21 17736432 17736821 -27170749 + MLT1B LTR MaLR 1 390 0 24 0 0 0 chr21 17737356 17737380 -27170190 + AT_rich Low_complexity Low_complexity 1 24 0 1091 145 0 0 chr21 17737461 17737627 -27169943 - AluSp SINE Alu -11 302 137 2163 175 58 17 chr21 17739581 17739992 -27167578 + MSTA LTR MaLR 1 428 0 324 294 82 18 chr21 17741131 17741301 -27166269 - L1ME LINE L1 -419 5702 5522 349 345 23 11 chr21 17741585 17741759 -27165811 + MIR SINE MIR 76 251 -11 32 43 0 0 chr21 17741911 17741957 -27165613 + AT_rich Low_complexity Low_complexity 1 46 0 22 0 0 0 chr21 17742125 17742147 -27165423 + AT_rich Low_complexity Low_complexity 1 22 0 30015 126 8 55 chr21 17742245 17748693 -27158877 + L1PA7 LINE L1 12 6151 -3 371 315 94 74 chr21 17748722 17749001 -27158569 - MLT1L LTR MaLR -79 536 245 2778 13 0 0 chr21 17749001 17749308 -27158262 - AluYb8 SINE Alu -11 307 1 371 315 94 74 chr21 17749308 17749434 -27158136 - MLT1L LTR MaLR -370 245 123 257 318 0 0 chr21 17749624 17749687 -27157883 - MIR SINE MIR -152 110 48 350 254 90 0 chr21 17751449 17751571 -27155999 - L1ME3A LINE L1 -4 6166 6034 2028 293 33 5 chr21 17751588 17752188 -27155382 - MLT2F LTR ERVL -44 619 3 365 219 14 0 chr21 17752202 17752275 -27155295 - MER70B LTR ERVL -502 76 3 299 318 40 8 chr21 17752278 17752404 -27155166 - L1ME LINE L1 -707 5455 5326 31 92 0 0 chr21 17752728 17752815 -27154755 + AT_rich Low_complexity Low_complexity 1 87 0 2617 231 58 67 chr21 17754319 17755189 -27152381 - MER21B LTR ERV1 -1 862 1 866 175 30 98 chr21 17756387 17756621 -27150949 + MER20 DNA MER1_type 1 218 -1 21 36 0 0 chr21 17756684 17756712 -27150858 + AT_rich Low_complexity Low_complexity 1 28 0 879 291 91 28 chr21 17756740 17757527 -27150043 + L1MEc LINE L1 1967 2767 -3448 1637 212 3 0 chr21 17758001 17758307 -27149263 + AluJb SINE Alu 1 307 -5 23 78 0 0 chr21 17758364 17758415 -27149155 + AT_rich Low_complexity Low_complexity 1 51 0 330 322 7 34 chr21 17759215 17759364 -27148206 - MIR3 SINE MIR -4 204 60 2045 132 3 0 chr21 17760530 17760825 -27146745 + AluSg SINE Alu 1 296 -14 2068 169 9 0 chr21 17761941 17762285 -27145285 - MER7A DNA MER2_type 0 346 2 269 292 77 24 chr21 17763208 17763379 -27144191 + MIR SINE MIR 10 189 -62 186 43 0 0 chr21 17763553 17763576 -27143994 + (ATTG)n Simple_repeat Simple_repeat 4 26 0 2061 100 7 0 chr21 17763576 17763855 -27143715 - AluSq SINE Alu -32 281 1 24 32 0 0 chr21 17764068 17764099 -27143471 + AT_rich Low_complexity Low_complexity 1 31 0 180 0 0 0 chr21 17765137 17765157 -27142413 + (TTTA)n Simple_repeat Simple_repeat 3 22 0 11144 188 24 27 chr21 17765670 17769305 -27138265 + L1PA15 LINE L1 2544 6163 -2 455 247 60 48 chr21 17769765 17769931 -27137639 + HAL1b LINE L1 392 559 -789 439 277 13 26 chr21 17770049 17770204 -27137366 - MLT1E LTR MaLR -2 591 439 956 163 121 0 chr21 17770207 17770397 -27137173 + MER46B DNA MER2_type 3 90 -146 21 36 0 0 chr21 17772789 17772817 -27134753 + AT_rich Low_complexity Low_complexity 1 28 0 23 33 0 0 chr21 17774725 17774755 -27132815 + AT_rich Low_complexity Low_complexity 1 30 0 24 0 0 0 chr21 17774819 17774843 -27132727 + AT_rich Low_complexity Low_complexity 1 24 0 1465 192 33 59 chr21 17775273 17775316 -27132254 - MLT1B LTR MaLR 0 390 347 1952 160 33 30 chr21 17775316 17775679 -27131891 - THE1B LTR MaLR 0 364 1 1465 192 33 59 chr21 17775679 17776025 -27131545 - MLT1B LTR MaLR -43 347 11 1492 212 24 17 chr21 17776052 17776340 -27131230 + AluJo SINE Alu 3 292 -20 1060 207 66 77 chr21 17776693 17777070 -27130500 + MER93b LTR ERV1 1 373 0 2304 55 7 35 chr21 17777292 17777602 -27129968 + AluY SINE Alu 1 301 -10 1261 175 30 26 chr21 17777733 17778001 -27129569 - AluSx SINE Alu -4 308 40 288 130 0 0 chr21 17779262 17779308 -27128262 + (TA)n Simple_repeat Simple_repeat 2 47 0 1677 221 114 9 chr21 17779438 17779895 -27127675 + MLT1D LTR MaLR 1 505 0 275 49 24 0 chr21 17779967 17780008 -27127562 + (CA)n Simple_repeat Simple_repeat 1 42 0 204 40 0 0 chr21 17780007 17780032 -27127538 + (GA)n Simple_repeat Simple_repeat 2 26 0 * 1695 175 57 14 chr21 17780116 17780465 -27127105 - THE1B LTR MaLR 0 364 1 249 309 51 83 chr21 17781068 17781285 -27126285 + L2 LINE L2 3103 3312 -1 21 36 0 0 chr21 17781316 17781344 -27126226 + AT_rich Low_complexity Low_complexity 1 28 0 580 160 50 25 chr21 17781620 17781739 -27125831 + MER34 LTR ERV1 24 145 -397 23 0 0 0 chr21 17781832 17781855 -27125715 + AT_rich Low_complexity Low_complexity 1 23 0 2338 278 86 44 chr21 17781896 17782308 -27125262 + L1ME1 LINE L1 131 524 -5872 1393 246 86 44 chr21 17782308 17782807 -27124763 - MLT2B1 LTR ERVL 0 520 1 2338 278 86 44 chr21 17782807 17783699 -27123871 + L1ME1 LINE L1 524 1489 -4907 1941 241 81 52 chr21 17783728 17784677 -27122893 + L1ME1 LINE L1 4684 5689 -546 2332 61 0 48 chr21 17784677 17784988 -27122582 - AluY SINE Alu -15 296 1 1941 241 81 52 chr21 17784988 17785546 -27122024 + L1ME1 LINE L1 5689 6230 -5 1518 139 79 60 chr21 17787077 17787445 -27120125 - THE1C LTR MaLR 0 375 1 520 296 90 29 chr21 17787655 17788079 -27119491 + MLT1G3 LTR MaLR 24 530 0 242 292 65 26 chr21 17788252 17788406 -27119164 + MLT1G3-int LTR MaLR 313 472 -899 3170 121 26 12 chr21 17789042 17789546 -27118024 + MER9 LTR ERVK 1 511 0 21 36 0 0 chr21 17790248 17790276 -27117294 + AT_rich Low_complexity Low_complexity 1 28 0 458 303 84 32 chr21 17790292 17790559 -27117011 + MLT1G LTR MaLR 3 255 -335 441 0 0 0 chr21 17790559 17790608 -27116962 + (GA)n Simple_repeat Simple_repeat 2 50 0 458 303 84 32 chr21 17790608 17790798 -27116772 + MLT1G LTR MaLR 255 580 -10 1320 206 150 3 chr21 17791005 17791345 -27116225 + MLT1B LTR MaLR 1 390 0 239 214 29 0 chr21 17791539 17791609 -27115961 + (TCTA)n Simple_repeat Simple_repeat 3 74 0 255 79 0 0 chr21 17791610 17791648 -27115922 + (TG)n Simple_repeat Simple_repeat 1 38 0 1980 115 0 43 chr21 17792187 17792492 -27115078 + AluSq SINE Alu 1 292 -21 22 80 0 0 chr21 17793082 17793132 -27114438 + AT_rich Low_complexity Low_complexity 1 50 0 201 122 49 0 chr21 17793944 17793985 -27113585 + (TTA)n Simple_repeat Simple_repeat 2 44 0 235 205 27 18 chr21 17794260 17794372 -27113198 + (TA)n Simple_repeat Simple_repeat 1 113 0 201 184 18 35 chr21 17794394 17794508 -27113062 + (TA)n Simple_repeat Simple_repeat 1 112 0 2312 142 13 8 chr21 17794510 17794883 -27112687 - THE1C LTR MaLR 0 375 1 8779 142 59 7 chr21 17794883 17796384 -27111186 - THE1C-int LTR MaLR 0 1580 1 1924 161 13 3 chr21 17796427 17796732 -27110838 + AluSx SINE Alu 3 310 -2 1920 143 90 18 chr21 17796756 17797091 -27110479 - THE1B LTR MaLR 0 364 6 10949 112 4 3 chr21 17797096 17798673 -27108897 - THE1B-int LTR MaLR -1 1579 1 1884 121 81 29 chr21 17798673 17799019 -27108551 - THE1B LTR MaLR 0 364 1 2329 133 0 0 chr21 17799019 17799350 -27108220 - THE1C LTR MaLR -44 331 1 2401 75 0 0 chr21 17800723 17801018 -27106552 + AluY SINE Alu 1 295 -16 35 0 0 0 chr21 17801018 17801053 -27106517 + AT_rich Low_complexity Low_complexity 1 35 0 28 0 0 0 chr21 17802234 17802262 -27105308 + AT_rich Low_complexity Low_complexity 1 28 0 1770 182 0 3 chr21 17803105 17803396 -27104174 + AluJb SINE Alu 1 290 -22 24 67 0 0 chr21 17803449 17803494 -27104076 + AT_rich Low_complexity Low_complexity 1 45 0 217 333 0 0 chr21 17803542 17803602 -27103968 + L2 LINE L2 3205 3264 -8 24 0 0 0 chr21 17803975 17803999 -27103571 + AT_rich Low_complexity Low_complexity 1 24 0 257 51 26 0 chr21 17804559 17804598 -27102972 + (TG)n Simple_repeat Simple_repeat 2 41 0 348 247 90 79 chr21 17805720 17805999 -27101571 - LTR50 LTR ERVL -484 311 30 1352 199 49 120 chr21 17806097 17806705 -27100865 - MER34B LTR ERV1 0 565 1 405 0 0 0 chr21 17807263 17807308 -27100262 + (TG)n Simple_repeat Simple_repeat 2 46 0 21 57 0 0 chr21 17807865 17807900 -27099670 + AT_rich Low_complexity Low_complexity 1 35 0 484 238 12 62 chr21 17808781 17809015 -27098555 + MER58 DNA MER1_type 1 2420 0 362 273 68 40 chr21 17809015 17809191 -27098379 + HERV16 LTR ERVL 764 944 -4052 1573 210 12 119 chr21 17809233 17809794 -27097776 - MLT1D LTR MaLR -4 501 1 277 304 78 9 chr21 17809794 17809909 -27097661 - MERVL LTR ERVL -2529 2956 2834 2702 151 40 17 chr21 17810022 17810565 -27097005 + LTR38 LTR ERV1 1 556 0 473 292 43 27 chr21 17811114 17811299 -27096271 + L1ME LINE L1 646 833 -5563 259 312 53 53 chr21 17811425 17811726 -27095844 + L1ME LINE L1 779 1079 -5330 4987 120 25 38 chr21 17811808 17813197 -27094373 + pTR5 LTR ERV1 742 2606 0 968 348 65 48 chr21 17813520 17813669 -27093901 - MER115 DNA AcHobo -2 691 546 2093 230 77 2 chr21 17813669 17814108 -27093462 + MER70A LTR ERVL 1 472 0 968 348 65 48 chr21 17814108 17814547 -27093023 - MER115 DNA AcHobo -147 546 93 188 339 0 0 chr21 17815049 17815105 -27092465 + L2 LINE L2 3217 3272 0 26 30 0 0 chr21 17815179 17815212 -27092358 + AT_rich Low_complexity Low_complexity 1 33 0 282 171 0 0 chr21 17815692 17815733 -27091837 + AluJ/FRAM SINE Alu 228 268 -34 240 111 0 0 chr21 17815868 17815904 -27091666 + (A)n Simple_repeat Simple_repeat 1 36 0 40 73 0 0 chr21 17816516 17816598 -27090972 + AT_rich Low_complexity Low_complexity 1 82 0 540 207 6 77 chr21 17816712 17816835 -27090735 + L1MB8 LINE L1 6021 6130 -48 3288 164 2 22 chr21 17816835 17817372 -27090198 + MER1A DNA MER1_type 1 526 -1 540 207 6 77 chr21 17817372 17817417 -27090153 + L1MB8 LINE L1 6130 6177 -1 26 30 0 0 chr21 17817484 17817517 -27090053 + AT_rich Low_complexity Low_complexity 1 33 0 231 132 26 0 chr21 17817782 17817820 -27089750 - LTR33A LTR ERVL 0 523 485 * 1067 233 124 73 chr21 17817789 17818471 -27089099 - LTR41 LTR ERVL -6 767 12 521 335 21 46 chr21 17819046 17819330 -27088240 + LTR16A LTR ERVL 57 333 -117 2337 145 49 5 chr21 17819330 17819738 -27087832 - MSTA LTR MaLR 0 428 3 192 152 0 0 chr21 17819874 17819907 -27087663 + (CA)n Simple_repeat Simple_repeat 2 34 0 21 0 0 0 chr21 17820294 17820315 -27087255 + AT_rich Low_complexity Low_complexity 1 21 0 12619 229 45 32 chr21 17820630 17823228 -27084342 - L1MA4 LINE L1 -19 7302 4738 423 0 0 0 chr21 17823228 17823275 -27084295 + (TG)n Simple_repeat Simple_repeat 2 48 0 12619 229 45 32 chr21 17823275 17825755 -27081815 - L1MA4 LINE L1 -2583 4738 2219 189 0 0 0 chr21 17825755 17825776 -27081794 + (TTTTG)n Simple_repeat Simple_repeat 2 22 0 12619 229 45 32 chr21 17825776 17827714 -27079856 - L1MA4 LINE L1 -5102 2219 307 4200 186 27 30 chr21 17827910 17828823 -27078747 + L1MC1 LINE L1 5406 6316 -17 1670 158 100 0 chr21 17829052 17829331 -27078239 + AluSx SINE Alu 1 307 -5 249 267 60 127 chr21 17829390 17829540 -27078030 + MIR3 SINE MIR 39 178 -30 729 162 7 7 chr21 17829841 17829983 -27077587 + L1MA10 LINE L1 6191 6332 -2 2221 112 0 3 chr21 17829991 17830287 -27077283 + AluSx SINE Alu 1 295 -17 431 357 31 11 chr21 17830852 17831208 -27076362 + L1PA15 LINE L1 10 372 -7209 3632 197 22 11 chr21 17832522 17833348 -27074222 + L1PA15 LINE L1 2321 3163 -4421 5301 190 8 7 chr21 17833354 17835001 -27072569 + L1PA15 LINE L1 5693 7340 -263 1399 179 0 8 chr21 17835168 17835425 -27072145 + L1PA15 LINE L1 7344 7598 -5 234 0 0 0 chr21 17837337 17837363 -27070207 + (GA)n Simple_repeat Simple_repeat 1 26 0 25 102 0 0 chr21 17838610 17838698 -27068872 + AT_rich Low_complexity Low_complexity 1 88 0 1582 190 7 23 chr21 17839010 17839315 -27068255 - AluJo SINE Alu -12 300 1 1944 188 11 0 chr21 17839435 17839796 -27067774 - MER47A DNA MER2_type 0 366 2 1898 249 69 27 chr21 17840011 17840574 -27066996 - MLT1E LTR MaLR 0 593 7 534 297 91 96 chr21 17842582 17842882 -27064688 - L2 LINE L2 -7 3306 3007 2288 113 0 0 chr21 17842882 17843191 -27064379 + AluSg SINE Alu 1 309 -1 534 297 91 96 chr21 17843191 17843307 -27064263 - L2 LINE L2 -306 3007 2892 1668 210 83 5 chr21 17843397 17843783 -27063787 + MSTB1 LTR MaLR 17 432 0 380 332 88 0 chr21 17843783 17843976 -27063594 - L2 LINE L2 -426 2888 2679 21 0 0 0 chr21 17844883 17844904 -27062666 + AT_rich Low_complexity Low_complexity 1 21 0 4585 157 48 62 chr21 17845196 17846215 -27061355 - L1MC1 LINE L1 0 6333 5329 726 270 13 17 chr21 17846217 17846450 -27061120 - L1MC1 LINE L1 -864 5282 5051 25 31 0 0 chr21 17846488 17846520 -27061050 + AT_rich Low_complexity Low_complexity 1 32 0 2032 119 0 3 chr21 17849734 17850019 -27057551 + AluSg SINE Alu 13 296 -14 842 266 16 4 chr21 17850446 17850698 -27056872 + L1MA9 LINE L1 6020 6274 -38 36 23 0 0 chr21 17851086 17851129 -27056441 + AT_rich Low_complexity Low_complexity 1 43 0 31 0 0 0 chr21 17851197 17851228 -27056342 + AT_rich Low_complexity Low_complexity 1 31 0 294 29 0 0 chr21 17851486 17851521 -27056049 + (CA)n Simple_repeat Simple_repeat 2 36 0 2403 43 0 0 chr21 17851550 17851855 -27055715 + AluY SINE Alu 1 305 0 22 56 0 0 chr21 17852063 17852099 -27055471 + AT_rich Low_complexity Low_complexity 1 36 0 23 0 0 0 chr21 17852159 17852182 -27055388 + AT_rich Low_complexity Low_complexity 1 23 0 22 94 0 0 chr21 17852415 17852479 -27055091 + AT_rich Low_complexity Low_complexity 1 64 0 25 31 0 0 chr21 17852652 17852684 -27054886 + AT_rich Low_complexity Low_complexity 1 32 0 244 217 0 14 chr21 17852986 17853055 -27054515 + A-rich Low_complexity Low_complexity 2 69 0 227 163 0 0 chr21 17853171 17853214 -27054356 - LTR66 LTR ERVL -171 439 397 276 299 119 34 chr21 17853606 17853783 -27053787 - MIR SINE MIR -52 210 19 1540 179 81 17 chr21 17853801 17854160 -27053410 + MLT1B LTR MaLR 1 423 -5 4000 47 0 6 chr21 17854236 17854745 -27052825 - L1PA5 LINE L1 -5 6149 5644 1877 59 0 0 chr21 17855344 17855581 -27051989 - L1PA5 LINE L1 -2 6152 5916 28 48 0 0 chr21 17857152 17857194 -27050376 + AT_rich Low_complexity Low_complexity 1 42 0 22 70 0 0 chr21 17857461 17857504 -27050066 + AT_rich Low_complexity Low_complexity 1 43 0 24 0 0 0 chr21 17858014 17858038 -27049532 + AT_rich Low_complexity Low_complexity 1 24 0 1906 121 28 0 chr21 17858275 17858565 -27049005 + L1PA11 LINE L1 5877 6174 0 1196 241 168 29 chr21 17858574 17859180 -27048390 + LTR50 LTR ERVL 3 795 0 254 299 109 40 chr21 17859464 17859638 -27047932 + L2 LINE L2 3128 3313 0 692 141 118 24 chr21 17859680 17859850 -27047720 + MER53 DNA DNA 4 189 0 1603 148 48 9 chr21 17860537 17861078 -27046492 - LTR24C LTR ERV1 0 635 1 880 247 29 97 chr21 17861192 17861400 -27046170 - L2 LINE L2 -858 2456 2235 2324 134 16 6 chr21 17861400 17861765 -27045805 + MER83C LTR ERV1 1 369 -4 880 247 29 97 chr21 17861765 17861919 -27045651 - L2 LINE L2 -1079 2235 2123 2322 85 0 0 chr21 17861919 17862212 -27045358 - AluY SINE Alu -18 293 1 880 247 29 97 chr21 17862212 17862261 -27045309 - L2 LINE L2 -1191 2123 2072 1780 238 75 35 chr21 17862261 17862355 -27045215 + MER21B LTR ERV1 1 90 -773 225 23 23 45 chr21 17862355 17862399 -27045171 + (TTTG)n Simple_repeat Simple_repeat 2 44 0 1780 238 75 35 chr21 17862399 17862784 -27044786 + MER21B LTR ERV1 90 499 -364 882 202 40 56 chr21 17862785 17862807 -27044763 - L1MD3 LINE L1 -201 7794 7773 3935 84 55 9 chr21 17862807 17863388 -27044182 + LTR14B LTR ERVK 1 608 0 882 202 40 56 chr21 17863388 17863617 -27043953 - L1MD3 LINE L1 -222 7773 7547 857 195 116 5 chr21 17863664 17863854 -27043716 + LTR49 LTR ERV1 3 213 -382 988 162 11 47 chr21 17863854 17864045 -27043525 - THE1B LTR MaLR 0 364 181 357 158 59 50 chr21 17864093 17864194 -27043376 - LTR48 LTR ERV1 -56 731 630 1173 190 47 43 chr21 17864207 17864486 -27043084 - AluJo SINE Alu -10 302 23 1087 165 53 138 chr21 17864511 17864887 -27042683 - LTR49 LTR ERV1 -251 344 1 766 240 63 45 chr21 17864890 17865111 -27042459 + MER21A LTR ERV1 621 845 -86 1477 195 75 21 chr21 17865218 17865362 -27042208 - LTR49 LTR ERV1 -241 354 219 2291 133 8 22 chr21 17865362 17865731 -27041839 + THE1B LTR MaLR 1 364 0 1477 195 75 21 chr21 17865731 17865920 -27041650 - LTR49 LTR ERV1 -376 219 3 955 195 35 22 chr21 17865964 17866262 -27041308 + L1MC3 LINE L1 7375 7808 -154 1839 179 27 42 chr21 17866287 17866689 -27040881 + MER57A LTR ERV1 8 403 0 198 0 0 0 chr21 17867568 17867590 -27039980 + (TC)n Simple_repeat Simple_repeat 1 22 0 * 288 0 0 0 chr21 17867589 17867621 -27039949 + (CA)n Simple_repeat Simple_repeat 1 32 0 24 0 0 0 chr21 17868549 17868573 -27038997 + AT_rich Low_complexity Low_complexity 1 24 0 461 61 0 15 chr21 17869488 17869554 -27038016 + (TAGA)n Simple_repeat Simple_repeat 4 68 0 2232 192 72 82 chr21 17869839 17870533 -27037037 + LTR8 LTR ERV1 4 690 -1 25 0 0 0 chr21 17870756 17870781 -27036789 + AT_rich Low_complexity Low_complexity 1 25 0 201 74 0 0 chr21 17871659 17871686 -27035884 + (CA)n Simple_repeat Simple_repeat 2 28 0 26 30 0 0 chr21 17873760 17873793 -27033777 + AT_rich Low_complexity Low_complexity 1 33 0 2976 119 26 2 chr21 17874030 17874484 -27033086 - MER4C LTR ERV1 0 465 1 503 247 91 70 chr21 17874546 17874881 -27032689 - LTR48B LTR ERV1 -13 774 447 2399 108 5 24 chr21 17874881 17875252 -27032318 - THE1B LTR MaLR 0 364 1 503 247 91 70 chr21 17875252 17875439 -27032131 - LTR48B LTR ERV1 -340 447 1 1498 228 82 41 chr21 17875520 17876011 -27031559 - MER67D LTR ERV1 -2 512 2 1997 137 0 0 chr21 17876570 17876876 -27030694 - AluSx SINE Alu 0 306 1 1881 266 67 29 chr21 17876879 17877999 -27029571 - L1MEc LINE L1 -3327 2888 1765 1707 285 152 22 chr21 17878052 17879306 -27028264 - L1MEc LINE L1 -4920 1476 60 517 271 0 71 chr21 17879627 17879688 -27027882 + MIR SINE MIR 72 136 -126 2416 56 0 3 chr21 17879688 17879994 -27027576 - AluY SINE Alu -6 305 1 517 271 0 71 chr21 17879994 17880102 -27027468 + MIR SINE MIR 136 229 -33 27 0 0 0 chr21 17881334 17881361 -27026209 + AT_rich Low_complexity Low_complexity 1 27 0 1417 176 44 54 chr21 17881730 17882026 -27025544 - AluJo SINE Alu -17 295 3 362 226 39 20 chr21 17882067 17882169 -27025401 + L1ME1 LINE L1 6060 6163 -3 201 108 0 0 chr21 17882200 17882237 -27025333 + (CAT)n Simple_repeat Simple_repeat 1 37 0 315 174 64 151 chr21 17882247 17882419 -27025151 + L1MC5 LINE L1 7779 7935 -26 186 43 0 0 chr21 17882421 17882444 -27025126 + (CA)n Simple_repeat Simple_repeat 2 24 0 521 305 49 25 chr21 17882688 17882891 -27024679 + MIR SINE MIR 1 208 -54 256 271 0 0 chr21 17884399 17884458 -27023112 + MIR3 SINE MIR 120 178 -30 1009 325 29 16 chr21 17885016 17885401 -27022169 + REP3 LTR ERV 1 390 -172 22 35 0 0 chr21 17885446 17885475 -27022095 + AT_rich Low_complexity Low_complexity 1 29 0 1442 239 35 21 chr21 17885743 17886120 -27021450 - MER70A LTR ERVL -14 458 77 257 192 45 13 chr21 17886120 17886354 -27021216 + (TA)n Simple_repeat Simple_repeat 1 241 0 1755 190 81 0 chr21 17886572 17886904 -27020666 + MLT1A1 LTR MaLR 7 365 0 1619 311 43 19 chr21 17886948 17886998 -27020572 + L1ME1 LINE L1 204 251 -6145 1877 175 67 3 chr21 17886998 17887370 -27020200 - MSTD LTR MaLR 0 396 1 1619 311 43 19 chr21 17887370 17887997 -27019573 + L1ME1 LINE L1 251 897 -5499 444 274 156 11 chr21 17888187 17888545 -27019025 + L1ME1 LINE L1 954 1363 -5033 * 1497 275 58 52 chr21 17888542 17889312 -27018258 + L1ME1 LINE L1 5364 6138 -97 409 217 12 0 chr21 17890237 17890320 -27017250 - MIR SINE MIR -78 184 101 2625 180 25 65 chr21 17890384 17890798 -27016772 - MER6A DNA MER2_type -260 605 223 414 0 0 0 chr21 17890798 17890844 -27016726 + (CA)n Simple_repeat Simple_repeat 1 46 0 2625 180 25 65 chr21 17890844 17891057 -27016513 - MER6A DNA MER2_type -642 223 3 2318 54 0 35 chr21 17892488 17892803 -27014767 - AluY SINE Alu -7 304 1 464 282 30 0 chr21 17893049 17893180 -27014390 + MIR3 SINE MIR 69 203 -5 213 196 0 0 chr21 17896264 17896310 -27011260 + (TA)n Simple_repeat Simple_repeat 1 46 0 276 239 0 30 chr21 17896705 17896772 -27010798 - L2 LINE L2 -4 3309 3245 1339 197 47 3 chr21 17897111 17897431 -27010139 - Ricksha DNA DNA -7 3239 2906 2114 118 0 16 chr21 17897433 17897748 -27009822 + AluSq SINE Alu 1 310 -3 207 119 95 0 chr21 17897748 17897790 -27009780 + GA-rich Low_complexity Low_complexity 1 46 0 5854 175 28 6 chr21 17897790 17897826 -27009744 - Ricksha DNA DNA -313 2933 2899 204 67 0 0 chr21 17897826 17897856 -27009714 + (TA)n Simple_repeat Simple_repeat 1 30 0 5854 175 28 6 chr21 17897856 17898909 -27008661 - Ricksha DNA DNA -347 2899 1821 1464 174 7 62 chr21 17898907 17899211 -27008359 - Ricksha DNA DNA -2957 289 3 * 365 287 105 53 chr21 17899217 17899597 -27007973 - L1M4 LINE L1 -3097 3049 2650 21 36 0 0 chr21 17901385 17901413 -27006157 + AT_rich Low_complexity Low_complexity 1 28 0 349 288 42 26 chr21 17901568 17901721 -27005849 + MLT1E LTR MaLR 25 182 -385 562 319 45 24 chr21 17902128 17902420 -27005150 + ERVL LTR ERVL 2071 2368 -3396 4787 224 68 27 chr21 17902482 17902625 -27004945 - L1MC1 LINE L1 -25 6588 6452 1516 175 38 24 chr21 17902625 17902916 -27004654 + AluJo SINE Alu 2 296 -16 4787 224 68 27 chr21 17902916 17904869 -27002701 - L1MC1 LINE L1 -161 6452 4369 2274 105 0 0 chr21 17904869 17905174 -27002396 + AluY SINE Alu 1 305 -6 4787 224 68 27 chr21 17905174 17905639 -27001931 - L1MC1 LINE L1 -2244 4369 3924 591 251 44 4 chr21 17905733 17905960 -27001610 - L1MC1 LINE L1 -2872 3554 3319 1570 180 27 88 chr21 17905967 17906511 -27001059 + MLT2A2 LTR ERVL 27 554 0 2875 229 31 25 chr21 17906516 17907443 -27000127 - L1MC1 LINE L1 -3106 3320 2384 2126 113 0 3 chr21 17907443 17907735 -26999835 - AluSg SINE Alu -19 291 1 2875 229 31 25 chr21 17907735 17907887 -26999683 - L1MC1 LINE L1 -4042 2384 2234 1008 318 43 10 chr21 17907931 17908346 -26999224 + L2 LINE L2 1924 2352 -962 2569 185 111 32 chr21 17908379 17909001 -26998569 + LTR51 LTR ERV1 1 671 0 2236 99 0 0 chr21 17910091 17910393 -26997177 - AluSg SINE Alu -8 302 1 618 173 30 81 chr21 17910893 17911090 -26996480 + MER53 DNA DNA 2 188 -1 22 35 0 0 chr21 17913448 17913477 -26994093 + AT_rich Low_complexity Low_complexity 1 29 0 1874 160 0 0 chr21 17913715 17914062 -26993508 + AluSx SINE Alu 1 347 0 190 281 18 35 chr21 17914078 17914135 -26993435 - MIR SINE MIR -116 146 91 1688 217 17 8 chr21 17914314 17914674 -26992896 + MLT1A1 LTR MaLR 3 365 0 23 0 0 0 chr21 17914911 17914934 -26992636 + AT_rich Low_complexity Low_complexity 1 23 0 1226 184 0 8 chr21 17915605 17915866 -26991704 + L1MA4 LINE L1 6038 6296 -4 318 226 84 63 chr21 17915919 17916109 -26991461 - Charlie7 DNA MER1_type -1 2611 2418 308 24 24 0 chr21 17916280 17916321 -26991249 + (TG)n Simple_repeat Simple_repeat 1 42 0 356 279 36 0 chr21 17916335 17916446 -26991124 - Charlie7 DNA MER1_type -556 2056 1942 21 71 0 0 chr21 17917228 17917270 -26990300 + AT_rich Low_complexity Low_complexity 1 42 0 2184 120 0 0 chr21 17917279 17917579 -26989991 + AluSq SINE Alu 1 300 -13 696 163 0 31 chr21 17917581 17917710 -26989860 - L1PB4 LINE L1 -17 6139 6015 22 88 0 0 chr21 17918044 17918101 -26989469 + AT_rich Low_complexity Low_complexity 1 57 0 1862 155 0 3 chr21 17918221 17918517 -26989053 - AluSx SINE Alu -17 295 1 27 29 0 0 chr21 17918735 17918769 -26988801 + AT_rich Low_complexity Low_complexity 1 34 0 1933 147 16 3 chr21 17918868 17919182 -26988388 - MER57A LTR ERV1 -85 318 1 16125 148 51 75 chr21 17919182 17921111 -26986459 - MER57A-int LTR ERV1 0 7537 5563 1865 128 4 0 chr21 17921111 17921384 -26986186 + AluSc SINE Alu 1 274 -35 16125 148 51 75 chr21 17921384 17923305 -26984265 - MER57A-int LTR ERV1 -1974 5563 1709 414 236 43 25 chr21 17923739 17923933 -26983637 - MER57A-int LTR ERV1 -3681 1190 1096 381 211 0 0 chr21 17924108 17924184 -26983386 - MER34C LTR ERV1 -355 230 155 4516 168 16 34 chr21 17924456 17925312 -26982258 - MER57A-int LTR ERV1 -6696 841 1 2218 161 20 5 chr21 17925312 17925709 -26981861 - MER57A LTR ERV1 0 403 1 647 222 106 55 chr21 17925726 17926154 -26981416 - MER69 DNA AcHobo -82 2444 2012 * 738 250 76 51 chr21 17926151 17926467 -26981103 - MER69 DNA AcHobo -1953 573 250 680 273 64 69 chr21 17926467 17926915 -26980655 - MER57A LTR ERV1 0 556 138 287 217 0 0 chr21 17927046 17927106 -26980464 - MLT2C1 LTR ERVL 0 520 461 22 94 0 0 chr21 17927167 17927231 -26980339 + AT_rich Low_complexity Low_complexity 1 64 0 275 269 25 8 chr21 17927284 17927403 -26980167 + (TA)n Simple_repeat Simple_repeat 2 122 0 1591 196 51 0 chr21 17927407 17927723 -26979847 - MLT2C1 LTR ERVL -57 340 9 547 241 18 0 chr21 17929298 17929450 -26978120 + L1MB5 LINE L1 5835 5995 -189 390 204 28 0 chr21 17929453 17929553 -26978017 + L1MB7 LINE L1 5877 5985 -189 357 275 12 66 chr21 17929587 17929754 -26977816 - MLT1I LTR MaLR -239 170 13 24 0 0 0 chr21 17929818 17929842 -26977728 + AT_rich Low_complexity Low_complexity 1 24 0 330 311 124 35 chr21 17930498 17930836 -26976734 - LTR33 LTR ERVL -146 375 8 1459 174 36 60 chr21 17930872 17931256 -26976314 + THE1C LTR MaLR 1 375 0 2064 134 0 0 chr21 17931287 17931579 -26975991 - AluSg SINE Alu -3 307 16 282 340 30 65 chr21 17932298 17932530 -26975040 + MLT1J2 LTR MaLR 223 446 -4 22 0 0 0 chr21 17932640 17932662 -26974908 + AT_rich Low_complexity Low_complexity 1 22 0 243 250 33 0 chr21 17932692 17932752 -26974818 - L1ME3 LINE L1 -24 6138 6077 345 230 63 75 chr21 17932752 17932926 -26974644 - L1ME LINE L1 -5138 932 761 184 68 23 45 chr21 17933064 17933108 -26974462 + (TTTTTG)n Simple_repeat Simple_repeat 2 44 0 344 383 120 7 chr21 17934327 17934635 -26972935 + L2 LINE L2 2804 3146 -167 1430 181 10 111 chr21 17934866 17935270 -26972300 + MLT1A1 LTR MaLR 1 363 -2 306 323 84 72 chr21 17937917 17938347 -26969223 - L2 LINE L2 -1160 2154 1720 315 336 8 8 chr21 17938960 17939079 -26968491 + MLT1E2 LTR MaLR 213 331 -295 1803 225 131 31 chr21 17940071 17940590 -26966980 + MLT1E2 LTR MaLR 52 622 -4 2009 143 0 0 chr21 17940922 17941216 -26966354 + AluSx SINE Alu 1 294 -18 328 307 24 24 chr21 17941353 17941480 -26966090 + MLT1H LTR MaLR 136 262 -287 31 0 0 0 chr21 17941733 17941764 -26965806 + AT_rich Low_complexity Low_complexity 1 31 0 2114 183 10 0 chr21 17941794 17942192 -26965378 + MER57A LTR ERV1 2 403 0 21 89 0 0 chr21 17942919 17942975 -26964595 + AT_rich Low_complexity Low_complexity 1 56 0 22 35 0 0 chr21 17943007 17943036 -26964534 + AT_rich Low_complexity Low_complexity 1 29 0 22 35 0 0 chr21 17943256 17943285 -26964285 + AT_rich Low_complexity Low_complexity 1 29 0 23 0 0 0 chr21 17943525 17943548 -26964022 + AT_rich Low_complexity Low_complexity 1 23 0 1204 183 87 68 chr21 17943754 17944121 -26963449 - MLT1A2 LTR MaLR 0 374 1 21 89 0 0 chr21 17944499 17944555 -26963015 + AT_rich Low_complexity Low_complexity 1 56 0 1719 150 36 65 chr21 17945896 17946210 -26961360 + THE1C LTR MaLR 1 304 -71 2272 102 0 19 chr21 17946210 17946524 -26961046 + AluY SINE Alu 1 308 -3 1719 150 36 65 chr21 17946524 17946595 -26960975 + THE1C LTR MaLR 304 375 0 9218 148 30 18 chr21 17946595 17948141 -26959429 + THE1C-int LTR MaLR 15 1579 -1 1764 170 52 25 chr21 17948141 17948506 -26959064 + THE1C LTR MaLR 1 375 0 21 0 0 0 chr21 17948843 17948864 -26958706 + AT_rich Low_complexity Low_complexity 1 21 0 218 339 16 41 chr21 17948919 17949040 -26958530 - L2 LINE L2 -541 2773 2656 342 138 0 0 chr21 17949044 17949102 -26958468 + (TG)n Simple_repeat Simple_repeat 1 58 0 1231 254 139 29 chr21 17949282 17949770 -26957800 - MLT1E2 LTR MaLR -78 548 7 360 0 0 0 chr21 17950454 17950494 -26957076 + (TTTA)n Simple_repeat Simple_repeat 2 41 0 2002 142 0 0 chr21 17950497 17950779 -26956791 - AluSq SINE Alu -31 282 1 1534 246 55 10 chr21 17950910 17951313 -26956257 + L1PB1 LINE L1 14 434 -7131 * 6306 196 25 8 chr21 17951311 17953767 -26953803 + L1PB1 LINE L1 4722 7210 -360 276 213 0 0 chr21 17953767 17953828 -26953742 + (TA)n Simple_repeat Simple_repeat 2 62 0 2404 121 11 3 chr21 17953828 17954201 -26953369 + L1PB1 LINE L1 7195 7570 0 1161 169 42 4 chr21 17954287 17954639 -26952931 + L1M1 LINE L1 5101 5462 -743 1378 126 35 0 chr21 17954642 17954872 -26952698 + L1MA2 LINE L1 6056 6293 -11 21 57 0 0 chr21 17955221 17955256 -26952314 + AT_rich Low_complexity Low_complexity 1 35 0 254 304 20 0 chr21 17955428 17955530 -26952040 + (TATATG)n Simple_repeat Simple_repeat 3 106 0 21 0 0 0 chr21 17955783 17955804 -26951766 + AT_rich Low_complexity Low_complexity 1 21 0 25 31 0 0 chr21 17957508 17957540 -26950030 + AT_rich Low_complexity Low_complexity 1 32 0 25 51 0 0 chr21 17957746 17957785 -26949785 + AT_rich Low_complexity Low_complexity 1 39 0 53 57 0 0 chr21 17957984 17958072 -26949498 + AT_rich Low_complexity Low_complexity 1 88 0 223 310 190 7 chr21 17958205 17958347 -26949223 - MIR3 SINE MIR 0 208 41 351 119 0 0 chr21 17958429 17958496 -26949074 + (TATG)n Simple_repeat Simple_repeat 2 68 0 1323 232 0 7 chr21 17958496 17958780 -26948790 - AluJo SINE Alu -25 287 6 999 273 103 64 chr21 17959086 17959147 -26948423 - MLT1F1 LTR MaLR 0 567 510 2050 32 4 0 chr21 17959147 17959397 -26948173 - L1PA7 LINE L1 -18 6136 5886 999 273 103 64 chr21 17959397 17959872 -26947698 - MLT1F1 LTR MaLR -57 510 10 2255 134 11 6 chr21 17960694 17961045 -26946525 + THE1C LTR MaLR 3 355 -20 2406 63 0 3 chr21 17961099 17961402 -26946168 - AluY SINE Alu -9 302 1 288 277 64 21 chr21 17961758 17961899 -26945671 - L1ME4a LINE L1 0 6121 5975 360 206 37 37 chr21 17962236 17962343 -26945227 - MLT1E2 LTR MaLR -1 625 519 258 271 0 0 chr21 17962556 17962615 -26944955 + (TATATG)n Simple_repeat Simple_repeat 4 62 0 30 89 0 0 chr21 17962930 17963009 -26944561 + AT_rich Low_complexity Low_complexity 1 79 0 330 303 48 48 chr21 17963168 17963333 -26944237 - MIR3 SINE MIR -36 172 8 199 360 88 8 chr21 17963986 17964111 -26943459 - L2 LINE L2 -498 2816 2682 21 0 0 0 chr21 17964627 17964648 -26942922 + AT_rich Low_complexity Low_complexity 1 21 0 1095 225 26 1 chr21 17965594 17965863 -26941707 - MLT1D LTR MaLR -2 503 245 805 219 31 53 chr21 17965880 17966186 -26941384 + MLT2B1 LTR ERVL 79 479 -41 284 127 63 16 chr21 17966189 17966315 -26941255 + (TA)n Simple_repeat Simple_repeat 2 133 0 373 223 22 82 chr21 17966441 17966625 -26940945 - L1MC4 LINE L1 -131 7911 7739 225 295 105 18 chr21 17966645 17966930 -26940640 - L1MCa LINE L1 -4740 1686 1377 215 286 0 0 chr21 17967198 17967261 -26940309 + T-rich Low_complexity Low_complexity 2 64 0 2451 54 0 0 chr21 17967897 17968192 -26939378 + AluY SINE Alu 6 300 -11 512 68 81 0 chr21 17968590 17968664 -26938906 - MADE1 DNA Mariner 0 80 1 22 35 0 0 chr21 17969187 17969216 -26938354 + AT_rich Low_complexity Low_complexity 1 29 0 2344 113 42 8 chr21 17970509 17970888 -26936682 + L1MA3 LINE L1 5914 6305 0 2251 109 0 3 chr21 17970986 17971290 -26936280 + AluSq SINE Alu 1 303 -10 27 0 0 0 chr21 17971650 17971677 -26935893 + AT_rich Low_complexity Low_complexity 1 27 0 207 100 0 0 chr21 17972963 17972993 -26934577 + (TTCA)n Simple_repeat Simple_repeat 3 32 0 1963 135 3 10 chr21 17973224 17973561 -26934009 + AluSq SINE Alu 4 338 0 21 0 0 0 chr21 17974096 17974117 -26933453 + AT_rich Low_complexity Low_complexity 1 21 0 26 64 0 0 chr21 17975536 17975583 -26931987 + AT_rich Low_complexity Low_complexity 1 47 0 858 298 12 4 chr21 17975716 17975974 -26931596 + MLT1E1 LTR MaLR 3 262 -392 432 319 19 6 chr21 17976020 17976177 -26931393 + MLT1E1 LTR MaLR 313 471 -153 379 215 14 174 chr21 17976178 17976322 -26931248 - FLAM_A SINE Alu -12 121 1 663 250 32 6 chr21 17976326 17976482 -26931088 + MLT1E1 LTR MaLR 495 654 0 252 218 0 64 chr21 17977195 17977273 -26930297 + L1MB2 LINE L1 5981 6053 -118 2895 225 64 28 chr21 17977576 17978465 -26929105 - L1M4c LINE L1 -1959 4011 3091 313 146 0 0 chr21 17978468 17978516 -26929054 - L1 LINE L1 -3451 2519 2472 * 4031 117 51 5 chr21 17978513 17979528 -26928042 + L1PBa LINE L1 2307 3369 -3493 354 203 26 59 chr21 17979532 17979685 -26927885 - L1M4c LINE L1 -3106 2864 2717 1904 260 56 42 chr21 17979743 17980634 -26926936 - L1M4c LINE L1 -4523 1368 560 1634 209 38 51 chr21 17980637 17981010 -26926560 + Tigger4(Zombi) DNA MER2_type 2 369 -2362 4899 190 34 40 chr21 17981011 17982089 -26925481 + Tigger4(Zombi) DNA MER2_type 1660 2731 0 582 301 35 5 chr21 17982102 17982301 -26925269 - L1M4c LINE L1 -5014 877 673 265 340 54 14 chr21 17982440 17982596 -26924974 - L1 LINE L1 -5212 679 268 375 326 82 3 chr21 17982669 17982868 -26924702 - L1M4c LINE L1 -5219 672 187 760 350 31 19 chr21 17982930 17983290 -26924280 - L1M4c LINE L1 -5524 367 4 1366 218 66 29 chr21 17983536 17983930 -26923640 + MER89 LTR ERV1 3 548 -11 3070 219 53 21 chr21 17983998 17984802 -26922768 + L1MB3 LINE L1 5320 6149 -34 310 310 121 97 chr21 17985196 17985683 -26921887 - HAL1 LINE L1 -1993 514 16 211 170 0 43 chr21 17986481 17986516 -26921054 + (TATATG)n Simple_repeat Simple_repeat 3 37 -10 12532 155 59 7 chr21 17986516 17988812 -26918758 - Tigger1 DNA MER2_type 0 2418 2 211 170 0 43 chr21 17988812 17988823 -26918747 + (TATATG)n Simple_repeat Simple_repeat 37 47 0 56 29 0 0 chr21 17989144 17989214 -26918356 + AT_rich Low_complexity Low_complexity 1 70 0 2797 152 9 9 chr21 17989791 17990258 -26917312 + L1 LINE L1 3830 4296 -1850 2006 98 0 7 chr21 17991369 17991669 -26915901 - AluSg SINE Alu 0 311 14 5545 34 0 0 chr21 17991914 17992571 -26914999 + L1PA5 LINE L1 5494 6150 -4 46 78 0 0 chr21 17993231 17993333 -26914237 + AT_rich Low_complexity Low_complexity 1 102 0 3170 201 193 31 chr21 17994491 17995549 -26912021 - L1MC2 LINE L1 -11 7755 6145 2142 64 74 3 chr21 17995560 17995857 -26911713 - LTR17 LTR ERV1 0 780 463 7454 177 72 11 chr21 17995857 17997387 -26910183 - L1P3 LINE L1 -3278 3183 1561 689 109 10 0 chr21 17997395 17997496 -26910074 + LTR9B LTR ERV1 1 102 -542 1772 196 9 18 chr21 17997500 17997842 -26909728 + HUERS-P3b LTR ERV1 157 495 -6923 11622 123 14 17 chr21 17997965 17999723 -26907847 + HUERS-P3b LTR ERV1 891 2642 -4776 2378 186 29 5 chr21 17999723 18000143 -26907427 - LTR8 LTR ERV1 -250 441 12 1932 138 19 6 chr21 18000145 18000321 -26907249 + HUERS-P3b LTR ERV1 3064 3247 -4171 2448 44 0 3 chr21 18000321 18000614 -26906956 - AluY SINE Alu -6 305 14 1932 138 19 6 chr21 18000614 18000756 -26906814 + HUERS-P3b LTR ERV1 3247 3386 -4032 * 2070 150 3 0 chr21 18000727 18001041 -26906529 + HUERS-P3 LTR ERV1 8601 8915 -4 4278 109 9 8 chr21 18001045 18001687 -26905883 + LTR9B LTR ERV1 2 644 0 5712 213 15 50 chr21 18001687 18003271 -26904299 - L1P3 LINE L1 -4734 1141 1 1227 217 125 78 chr21 18003279 18003961 -26903609 - L1MCa LINE L1 -4508 2056 1343 459 213 28 28 chr21 18004001 18004109 -26903461 - FLAM_A SINE Alu -17 125 18 238 148 0 37 chr21 18004115 18004169 -26903401 - L1MCa LINE L1 -5364 1200 1149 * 1889 257 75 52 chr21 18004168 18004845 -26902725 - L1MCa LINE L1 -5346 699 7 251 216 55 99 chr21 18005710 18005891 -26901679 - L1ME LINE L1 -239 5882 5710 1980 88 46 7 chr21 18006343 18006627 -26900943 - AluY SINE Alu -16 295 1 331 304 87 70 chr21 18006921 18007266 -26900304 - L1ME LINE L1 -302 5819 5469 207 0 0 0 chr21 18007604 18007627 -26899943 + (TG)n Simple_repeat Simple_repeat 2 24 0 25 75 0 0 chr21 18007809 18007862 -26899708 + AT_rich Low_complexity Low_complexity 1 53 0 1196 289 38 61 chr21 18007862 18008661 -26898909 - L1MC5 LINE L1 -449 7512 6733 240 59 0 0 chr21 18011266 18011300 -26896270 + (TTTTTG)n Simple_repeat Simple_repeat 2 35 0 1613 252 49 34 chr21 18011402 18011937 -26895633 - LTR55 LTR ERV -5 543 1 2097 144 19 25 chr21 18012526 18012888 -26894682 + THE1B LTR MaLR 1 360 -4 24 0 0 0 chr21 18013208 18013232 -26894338 + AT_rich Low_complexity Low_complexity 1 24 0 201 266 46 12 chr21 18014939 18015112 -26892458 + (TA)n Simple_repeat Simple_repeat 1 179 0 286 328 24 32 chr21 18015244 18015259 -26892311 - ERVL LTR ERVL -1317 4447 4433 1393 201 88 31 chr21 18015259 18015613 -26891957 - MLT1A2 LTR MaLR 0 374 1 286 328 24 32 chr21 18015613 18015722 -26891848 - ERVL LTR ERVL -1331 4433 4324 992 343 79 36 chr21 18016244 18017264 -26890306 - ERVL LTR ERVL -1963 3522 2459 24 0 0 0 chr21 18017647 18017671 -26889899 + AT_rich Low_complexity Low_complexity 1 24 0 419 384 88 11 chr21 18017675 18017938 -26889632 + HERV16 LTR ERVL 2807 3089 -1907 1908 154 26 32 chr21 18018144 18018521 -26889049 - THE1C LTR MaLR 0 375 1 2193 107 0 31 chr21 18019521 18019840 -26887730 - AluSq SINE Alu -4 309 1 259 289 0 62 chr21 18020166 18020263 -26887307 - ERVL LTR ERVL -4866 898 808 260 314 65 48 chr21 18020290 18020580 -26886990 - ERVL LTR ERVL -4340 656 362 254 203 25 13 chr21 18021482 18021561 -26886009 - HAL1 LINE L1 -108 2399 2320 314 45 23 0 chr21 18022013 18022057 -26885513 + (CA)n Simple_repeat Simple_repeat 2 46 0 1371 163 68 31 chr21 18022132 18022426 -26885144 - THE1C LTR MaLR -70 305 1 2115 166 38 20 chr21 18022431 18022828 -26884742 + MSTB1 LTR MaLR 28 431 -1 415 239 57 0 chr21 18023784 18023872 -26883698 - Tigger7 DNA MER2_type 0 2491 2399 2087 219 101 23 chr21 18023872 18024355 -26883215 - Tigger7 DNA MER2_type -212 521 1 2042 146 54 14 chr21 18024973 18025323 -26882247 + THE1B LTR MaLR 1 364 0 11201 111 3 0 chr21 18025324 18026898 -26880672 + THE1B-int LTR MaLR 2 1580 0 2233 126 54 14 chr21 18026898 18027248 -26880322 + THE1B LTR MaLR 1 364 0 28 0 0 0 chr21 18028309 18028337 -26879233 + AT_rich Low_complexity Low_complexity 1 28 0 673 334 126 37 chr21 18028343 18029182 -26878388 + L2 LINE L2 2151 3066 -247 22 56 0 0 chr21 18029247 18029283 -26878287 + AT_rich Low_complexity Low_complexity 1 36 0 783 324 132 22 chr21 18029469 18030319 -26877251 + L2 LINE L2 2335 3293 -20 318 328 62 26 chr21 18030355 18030550 -26877020 + L1MC3 LINE L1 4418 4619 -1527 645 263 153 87 chr21 18030682 18031187 -26876383 + MLT1F LTR MaLR 1 538 -4 200 218 91 0 chr21 18031928 18031983 -26875587 - MIR SINE MIR -121 141 82 27 49 0 0 chr21 18032399 18032440 -26875130 + AT_rich Low_complexity Low_complexity 1 41 0 3245 237 63 26 chr21 18032980 18034115 -26873455 + L1MC3 LINE L1 5135 7743 -42 213 65 0 0 chr21 18034838 18034869 -26872701 + (TTGG)n Simple_repeat Simple_repeat 2 32 0 2000 141 0 0 chr21 18034873 18035170 -26872400 + AluSx SINE Alu 1 297 -15 31 58 0 0 chr21 18036045 18036097 -26871473 + AT_rich Low_complexity Low_complexity 1 52 0 24 53 0 0 chr21 18036459 18036497 -26871073 + AT_rich Low_complexity Low_complexity 1 38 0 1744 157 150 38 chr21 18039051 18039478 -26868092 - MLT2B2 LTR ERVL -35 480 6 7709 159 57 9 chr21 18040366 18040434 -26867136 - Tigger1 DNA MER2_type -916 1502 1439 1998 140 0 7 chr21 18040434 18040741 -26866829 + AluSx SINE Alu 3 307 -5 7709 159 57 9 chr21 18040741 18041924 -26865646 - Tigger1 DNA MER2_type -979 1439 174 222 37 0 0 chr21 18041924 18041951 -26865619 + (TAA)n Simple_repeat Simple_repeat 3 29 0 7709 159 57 9 chr21 18041951 18042101 -26865469 - Tigger1 DNA MER2_type -2244 174 33 200 250 10 40 chr21 18042268 18042368 -26865202 + T-rich Low_complexity Low_complexity 2 98 0 1459 201 3 39 chr21 18042442 18042750 -26864820 + AluJo SINE Alu 3 299 -13 22 56 0 0 chr21 18043451 18043487 -26864083 + AT_rich Low_complexity Low_complexity 1 36 0 23 86 0 0 chr21 18043629 18043687 -26863883 + AT_rich Low_complexity Low_complexity 1 58 0 1629 181 7 3 chr21 18046463 18046761 -26860809 - AluJo SINE Alu -13 299 1 21 0 0 0 chr21 18046971 18046992 -26860578 + AT_rich Low_complexity Low_complexity 1 21 0 193 54 0 54 chr21 18047010 18047047 -26860523 + (TTTC)n Simple_repeat Simple_repeat 2 36 0 21 0 0 0 chr21 18047614 18047635 -26859935 + AT_rich Low_complexity Low_complexity 1 21 0 1495 120 0 21 chr21 18047790 18048023 -26859547 - AluSg/x SINE Alu -6 306 79 29 70 0 0 chr21 18048569 18048626 -26858944 + AT_rich Low_complexity Low_complexity 1 57 0 2209 110 0 0 chr21 18050099 18050399 -26857171 - AluSx SINE Alu -12 300 1 329 117 17 0 chr21 18050497 18050557 -26857013 + (TA)n Simple_repeat Simple_repeat 2 62 0 186 43 0 0 chr21 18050878 18050901 -26856669 + (TA)n Simple_repeat Simple_repeat 2 24 0 14070 43 8 0 chr21 18050901 18053399 -26854171 - L1PA5 LINE L1 -5 6149 3628 1660 144 5 75 chr21 18053929 18054300 -26853270 - MER4A LTR ERV1 0 664 261 510 133 89 0 chr21 18054300 18054390 -26853180 - MER4A LTR ERV1 -566 98 1 21 57 0 0 chr21 18054442 18054477 -26853093 + AT_rich Low_complexity Low_complexity 1 35 0 238 83 0 0 chr21 18054503 18054539 -26853031 + tRNA-Cys-TGC tRNA tRNA 1 36 -39 1180 238 132 33 chr21 18054566 18054990 -26852580 + MLT1C LTR MaLR 1 390 0 234 86 0 0 chr21 18055195 18055209 -26852361 + (CAT)n Simple_repeat Simple_repeat 2 15 -21 3372 96 15 0 chr21 18055209 18055688 -26851882 - LTR19A LTR ERV1 0 486 1 234 86 0 0 chr21 18055688 18055708 -26851862 + (CAT)n Simple_repeat Simple_repeat 14 36 0 369 0 0 0 chr21 18055758 18055799 -26851771 + (TG)n Simple_repeat Simple_repeat 2 42 0 273 244 57 106 chr21 18055889 18056012 -26851558 + L2 LINE L2 3155 3271 -1 191 298 48 75 chr21 18056112 18056300 -26851270 - MIR SINE MIR -3 259 77 219 325 0 12 chr21 18057163 18057246 -26850324 - MIR SINE MIR 0 262 181 23 0 0 0 chr21 18057632 18057655 -26849915 + AT_rich Low_complexity Low_complexity 1 23 0 266 250 0 0 chr21 18058288 18058352 -26849218 + A-rich Low_complexity Low_complexity 1 64 0 308 255 0 29 chr21 18058385 18058487 -26849083 + A-rich Low_complexity Low_complexity 2 100 0 22 80 0 0 chr21 18058994 18059044 -26848526 + AT_rich Low_complexity Low_complexity 1 50 0 183 156 0 0 chr21 18059337 18059369 -26848201 + GA-rich Low_complexity Low_complexity 3 34 0 7636 25 2 1 chr21 18059753 18060672 -26846898 - L1P LINE L1 -925 5221 4302 6976 31 1 0 chr21 18060672 18061499 -26846071 + L1PA3 LINE L1 5323 6152 -3 23 33 0 0 chr21 18061499 18061529 -26846041 + AT_rich Low_complexity Low_complexity 1 30 0 304 261 82 74 chr21 18062060 18062317 -26845253 + L1MC4a LINE L1 5002 5260 -886 572 303 139 6 chr21 18062326 18062649 -26844921 + L1MC4a LINE L1 5268 5633 -2175 1545 282 111 19 chr21 18062695 18063500 -26844070 + L1MC4a LINE L1 5713 6591 -1217 1189 239 25 48 chr21 18063511 18063951 -26843619 + L1MC4 LINE L1 6825 7254 -788 352 239 85 0 chr21 18064027 18064157 -26843413 + L1MC4 LINE L1 7902 8042 0 407 333 59 14 chr21 18064532 18064754 -26842816 + MIR SINE MIR 29 260 -2 22 35 0 0 chr21 18065436 18065465 -26842105 + AT_rich Low_complexity Low_complexity 1 29 0 32 43 0 0 chr21 18065738 18065784 -26841786 + AT_rich Low_complexity Low_complexity 1 46 0 194 294 0 0 chr21 18067024 18067075 -26840495 - L2 LINE L2 -3 3269 3219 621 246 0 0 chr21 18067091 18067217 -26840353 + MER7A DNA MER2_type 2 125 -221 320 270 56 16 chr21 18067290 18067416 -26840154 + L1ME LINE L1 4848 4978 -1168 5914 148 48 50 chr21 18067416 18068405 -26839165 + Tigger3b DNA MER2_type 1 988 -2040 1865 102 34 4 chr21 18068405 18068671 -26838899 - AluSq SINE Alu -35 278 5 5914 148 48 50 chr21 18068671 18068915 -26838655 + Tigger3b DNA MER2_type 988 1231 0 371 323 50 50 chr21 18069401 18069602 -26837968 + L2 LINE L2 2861 3061 -211 22 0 0 0 chr21 18069680 18069702 -26837868 + AT_rich Low_complexity Low_complexity 1 22 0 1225 268 105 70 chr21 18070047 18071831 -26835739 + L1MC/D LINE L1 2202 3921 -2225 2187 107 0 16 chr21 18071831 18072141 -26835429 + AluSp SINE Alu 1 305 -8 1225 268 105 70 chr21 18072141 18072316 -26835254 + L1MC/D LINE L1 3921 4088 -2058 1620 215 13 32 chr21 18072316 18072688 -26834882 - MLT1A1 LTR MaLR 0 365 1 1225 268 105 70 chr21 18072688 18072854 -26834716 + L1MC/D LINE L1 4088 4404 -1742 1009 221 14 0 chr21 18072863 18073076 -26834494 + L1MC/D LINE L1 5471 5686 -647 689 197 8 18 chr21 18073097 18073244 -26834326 - MSTC LTR MaLR -296 161 3 376 272 64 8 chr21 18073253 18073378 -26834192 + L1ME LINE L1 5589 5720 -442 1931 116 0 8 chr21 18073899 18074199 -26833371 + AluSc SINE Alu 16 313 0 278 50 25 0 chr21 18077182 18077222 -26830348 + (CA)n Simple_repeat Simple_repeat 2 42 0 185 174 0 22 chr21 18079627 18079673 -26827897 + (TA)n Simple_repeat Simple_repeat 2 46 0 477 90 0 0 chr21 18079988 18080055 -26827515 + (TG)n Simple_repeat Simple_repeat 2 68 0 1492 200 54 11 chr21 18080063 18080413 -26827157 - MLT1A1 LTR MaLR 0 365 1 220 356 0 0 chr21 18080437 18080510 -26827060 + (CATATA)n Simple_repeat Simple_repeat 5 77 0 1546 129 8 0 chr21 18080554 18080802 -26826768 - L1PA13 LINE L1 -4 6159 5910 1781 223 8 6 chr21 18080835 18081194 -26826376 - MLT2D LTR ERVL -52 362 3 2434 73 0 0 chr21 18081553 18081855 -26825715 - AluY SINE Alu -8 303 2 1554 170 61 45 chr21 18081999 18082358 -26825212 + MLT1A1 LTR MaLR 1 365 0 193 51 51 26 chr21 18082428 18082467 -26825103 + (TTATA)n Simple_repeat Simple_repeat 1 40 0 202 211 0 0 chr21 18083185 18083223 -26824347 + GA-rich Low_complexity Low_complexity 1 38 0 1264 118 86 16 chr21 18084801 18085046 -26822524 - L1MA8 LINE L1 -4 6287 6026 40 37 0 0 chr21 18085047 18085101 -26822469 + AT_rich Low_complexity Low_complexity 1 54 0 367 141 16 0 chr21 18085102 18085166 -26822404 - L1PA16 LINE L1 -3 6163 6099 4397 178 41 13 chr21 18085168 18085903 -26821667 - L1PA16 LINE L1 -105 6061 5291 189 0 0 0 chr21 18085903 18085924 -26821646 + (TTTTA)n Simple_repeat Simple_repeat 5 25 0 4397 178 41 13 chr21 18085924 18086350 -26821220 - L1PA16 LINE L1 -875 5291 4879 421 346 139 25 chr21 18086513 18087001 -26820569 - HAL1 LINE L1 -52 2455 1912 261 341 46 32 chr21 18087027 18087244 -26820326 - HAL1 LINE L1 -609 1898 1679 23 0 0 0 chr21 18087436 18087459 -26820111 + AT_rich Low_complexity Low_complexity 1 23 0 36 53 0 0 chr21 18087538 18087595 -26819975 + AT_rich Low_complexity Low_complexity 1 57 0 377 271 21 75 chr21 18087759 18087837 -26819733 - MIR SINE MIR -3 259 178 1920 108 3 14 chr21 18087837 18088154 -26819416 + AluSq SINE Alu 1 314 0 377 271 21 75 chr21 18088154 18088262 -26819308 - MIR SINE MIR -84 178 82 214 336 0 8 chr21 18090548 18090670 -26816900 + (CCA)n Simple_repeat Simple_repeat 1 121 0 248 0 31 0 chr21 18090845 18090877 -26816693 + (CAAA)n Simple_repeat Simple_repeat 2 34 0 258 116 0 0 chr21 18090977 18091020 -26816550 + (TG)n Simple_repeat Simple_repeat 2 44 0 183 266 47 0 chr21 18091058 18091122 -26816448 - L2 LINE L2 -32 3281 3215 2022 135 0 0 chr21 18091248 18091537 -26816033 + AluSx SINE Alu 1 289 -23 230 250 0 62 chr21 18091544 18091640 -26815930 + L1MC4 LINE L1 6614 6703 -1339 241 133 0 0 chr21 18091652 18091697 -26815873 + LTR66 LTR ERVL 394 438 -172 238 192 0 0 chr21 18091702 18091754 -26815816 + L1MC4 LINE L1 6652 6703 -1339 216 0 0 0 chr21 18091754 18091778 -26815792 + (TA)n Simple_repeat Simple_repeat 2 25 0 407 361 24 40 chr21 18092310 18092559 -26815011 + HAL1 LINE L1 1550 1794 -713 633 352 62 25 chr21 18092672 18093143 -26814427 + HAL1 LINE L1 2000 2487 -20 22 35 0 0 chr21 18093177 18093206 -26814364 + AT_rich Low_complexity Low_complexity 1 29 0 384 77 0 0 chr21 18093480 18093532 -26814038 + (CA)n Simple_repeat Simple_repeat 1 52 0 255 61 0 0 chr21 18094795 18094828 -26812742 + (TG)n Simple_repeat Simple_repeat 2 34 0 216 0 0 0 chr21 18095516 18095540 -26812030 + (TTTTTG)n Simple_repeat Simple_repeat 2 25 0 262 283 123 9 chr21 18095781 18095887 -26811683 - L2 LINE L2 -19 3253 3136 1236 293 79 5 chr21 18096973 18097342 -26810228 + MSTD LTR MaLR 1 396 0 3462 71 6 40 chr21 18097697 18098168 -26809402 - L1PA7 LINE L1 -7 6147 5661 1885 114 0 0 chr21 18098168 18098423 -26809147 - AluY SINE Alu -13 298 44 3462 71 6 40 chr21 18098423 18099032 -26808538 - L1PA7 LINE L1 -493 5661 4890 4080 139 22 74 chr21 18100111 18100939 -26806631 + LTR1 LTR ERV1 1 785 0 1905 130 75 23 chr21 18101232 18101578 -26805992 - THE1B LTR MaLR 0 364 1 11617 88 4 10 chr21 18101579 18103167 -26804403 - THE1B-int LTR MaLR -1 1579 1 2070 135 48 22 chr21 18103167 18103522 -26804048 - THE1B LTR MaLR 0 364 1 1949 185 11 21 chr21 18104250 18104623 -26802947 + MSTB1 LTR MaLR 1 369 -63 193 29 59 0 chr21 18105560 18105594 -26801976 + (TA)n Simple_repeat Simple_repeat 2 37 0 25 0 0 0 chr21 18105594 18105619 -26801951 + AT_rich Low_complexity Low_complexity 1 25 0 1481 239 11 16 chr21 18105646 18106010 -26801560 - MLT1A1 LTR MaLR 0 365 4 2219 91 0 9 chr21 18107306 18107624 -26799946 - L1PA6 LINE L1 0 6154 5840 2114 47 0 0 chr21 18107624 18107879 -26799691 + L1P2 LINE L1 5407 5661 -493 25 31 0 0 chr21 18107990 18108022 -26799548 + AT_rich Low_complexity Low_complexity 1 32 0 23 0 0 0 chr21 18108856 18108879 -26798691 + AT_rich Low_complexity Low_complexity 1 23 0 2310 87 0 3 chr21 18109220 18109532 -26798038 - AluY SINE Alu 0 311 1 25 0 0 0 chr21 18112505 18112530 -26795040 + AT_rich Low_complexity Low_complexity 1 25 0 227 306 135 9 chr21 18112653 18112764 -26794806 + MLT1I LTR MaLR 81 205 -204 289 244 0 13 chr21 18112826 18112904 -26794666 + MLT1I LTR MaLR 317 393 -16 183 358 28 37 chr21 18113137 18113246 -26794324 - L2 LINE L2 -179 3093 2986 338 221 29 0 chr21 18113443 18113511 -26794059 + MER76 LTR ERV 1 70 -618 1615 243 100 53 chr21 18113590 18113821 -26793749 + MER76 LTR ERV 63 282 -406 1792 123 27 10 chr21 18113821 18114121 -26793449 - AluSx SINE Alu -7 305 1 1615 243 100 53 chr21 18114121 18114487 -26793083 + MER76 LTR ERV 282 688 0 837 332 44 32 chr21 18114605 18115169 -26792401 - HERVL LTR ERVL -2728 2926 2356 1870 137 0 17 chr21 18117718 18118011 -26789559 - AluSx SINE Alu -15 297 10 295 332 46 36 chr21 18118209 18118405 -26789165 + MER63A DNA MER1_type 1 198 -12 1710 81 13 0 chr21 18118848 18119082 -26788488 - L1PA8 LINE L1 -9 6163 5927 246 301 36 0 chr21 18119174 18119257 -26788313 + MIR SINE MIR 156 241 -21 419 345 5 15 chr21 18119360 18119557 -26788013 - MIR SINE MIR -31 231 37 226 206 59 0 chr21 18120008 18120076 -26787494 - L1M4b LINE L1 -5210 1649 1578 225 65 0 0 chr21 18120170 18120201 -26787369 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 1510 154 56 8 chr21 18120204 18120471 -26787099 - AluSx SINE Alu -32 280 1 291 54 0 0 chr21 18120745 18120782 -26786788 + (TTTA)n Simple_repeat Simple_repeat 4 40 0 279 330 10 0 chr21 18121223 18121320 -26786250 - MER69 DNA AcHobo -2419 107 10 34 24 0 0 chr21 18121962 18122003 -26785567 + AT_rich Low_complexity Low_complexity 1 41 0 282 115 0 0 chr21 18122587 18122639 -26784931 + (GA)n Simple_repeat Simple_repeat 1 52 0 1120 95 0 0 chr21 18123161 18123308 -26784262 - AluY SINE Alu -164 147 1 218 19 58 58 chr21 18123322 18123374 -26784196 + (TTTTG)n Simple_repeat Simple_repeat 1 52 0 232 308 28 90 chr21 18123464 18123675 -26783895 - L1MC/D LINE L1 -2164 5644 5447 1013 130 6 0 chr21 18123713 18123874 -26783696 - AluSg/x SINE Alu -3 309 148 418 326 112 30 chr21 18124137 18124370 -26783200 + MIR SINE MIR 6 257 -5 766 306 80 34 chr21 18124460 18124875 -26782695 + L2 LINE L2 2876 3309 -4 23 86 0 0 chr21 18126446 18126504 -26781066 + AT_rich Low_complexity Low_complexity 1 58 0 263 289 123 9 chr21 18127139 18127253 -26780317 - MIR SINE MIR -57 205 79 25 51 0 0 chr21 18127458 18127497 -26780073 + AT_rich Low_complexity Low_complexity 1 39 0 21 36 0 0 chr21 18128374 18128402 -26779168 + AT_rich Low_complexity Low_complexity 1 28 0 30 45 0 0 chr21 18129006 18129050 -26778520 + AT_rich Low_complexity Low_complexity 1 44 0 26125 55 6 2 chr21 18130966 18135090 -26772480 + L1PA5 LINE L1 2012 6153 -1 1969 177 83 5 chr21 18137196 18137591 -26769979 + MSTA LTR MaLR 1 426 -2 27 49 0 0 chr21 18138037 18138078 -26769492 + AT_rich Low_complexity Low_complexity 1 41 0 24 0 0 0 chr21 18138285 18138309 -26769261 + AT_rich Low_complexity Low_complexity 1 24 0 309 109 0 0 chr21 18139436 18139482 -26768088 + (TA)n Simple_repeat Simple_repeat 1 46 0 24 77 0 0 chr21 18139509 18139561 -26768009 + AT_rich Low_complexity Low_complexity 1 52 0 26 30 0 0 chr21 18140044 18140077 -26767493 + AT_rich Low_complexity Low_complexity 1 33 0 256 136 51 0 chr21 18140095 18140154 -26767416 + (CATA)n Simple_repeat Simple_repeat 1 62 0 42 0 0 0 chr21 18141150 18141192 -26766378 + AT_rich Low_complexity Low_complexity 1 42 0 2496 182 14 41 chr21 18142098 18142354 -26765216 - MER70B LTR ERVL -103 475 237 1898 83 29 40 chr21 18142354 18142630 -26764940 - AluSx SINE Alu -19 293 21 2496 182 14 41 chr21 18142630 18142861 -26764709 - MER70B LTR ERVL -341 237 1 213 211 0 0 chr21 18143357 18143409 -26764161 + (TA)n Simple_repeat Simple_repeat 2 53 0 1558 85 0 5 chr21 18143995 18144196 -26763374 + AluY SINE Alu 1 200 -111 1731 177 91 19 chr21 18144998 18145520 -26762050 - MLT2A2 LTR ERVL 0 554 1 454 317 73 45 chr21 18146185 18146582 -26760988 + HERVL LTR ERVL 3506 3913 -1741 486 363 44 14 chr21 18146689 18147033 -26760537 + HERVL LTR ERVL 4067 4420 -1234 222 203 72 0 chr21 18148647 18148716 -26758854 + A-rich Low_complexity Low_complexity 3 76 0 216 294 12 12 chr21 18148794 18148879 -26758691 + (TAG)n Simple_repeat Simple_repeat 2 86 0 30 27 0 0 chr21 18149757 18149794 -26757776 + AT_rich Low_complexity Low_complexity 1 37 0 384 179 0 12 chr21 18149809 18149893 -26757677 - L1PB4 LINE L1 0 6156 6074 271 248 9 19 chr21 18150300 18150405 -26757165 + (TA)n Simple_repeat Simple_repeat 2 105 0 1622 249 83 78 chr21 18151426 18151930 -26755640 - MLT1E1 LTR MaLR -1 653 144 1366 233 50 11 chr21 18151930 18152290 -26755280 - MLT1A2 LTR MaLR 0 374 1 1622 249 83 78 chr21 18152290 18152423 -26755147 - MLT1E1 LTR MaLR -510 144 13 225 295 16 33 chr21 18152512 18152634 -26754936 + GA-rich Low_complexity Low_complexity 4 123 0 205 241 8 45 chr21 18152915 18153048 -26754522 + CT-rich Low_complexity Low_complexity 3 130 0 242 289 66 58 chr21 18153080 18153201 -26754369 + L2 LINE L2 2438 2559 -755 1188 285 92 5 chr21 18153532 18153956 -26753614 + MLT1C LTR MaLR 7 467 0 213 393 16 16 chr21 18153958 18154080 -26753490 + L2 LINE L2 2987 3108 -164 1073 86 0 0 chr21 18154973 18155113 -26752457 - AluSg/x SINE Alu -17 293 154 516 146 0 0 chr21 18155116 18155198 -26752372 - AluY SINE Alu -236 82 1 11742 175 43 26 chr21 18156262 18158691 -26748879 + L1M4c LINE L1 18 2487 -3897 1305 203 103 11 chr21 18158689 18159049 -26748521 + L1MB3 LINE L1 5783 6175 -8 * 32 0 0 0 chr21 18160298 18160330 -26747240 + AT_rich Low_complexity Low_complexity 1 32 0 519 335 35 22 chr21 18160970 18161200 -26746370 + MIR SINE MIR 12 244 -18 2360 62 0 20 chr21 18161792 18162098 -26745472 + AluY SINE Alu 1 300 -11 477 198 0 0 chr21 18162101 18162202 -26745368 + GA-rich Low_complexity Low_complexity 2 102 0 235 143 0 0 chr21 18162212 18162247 -26745323 + MLT1I LTR MaLR 100 134 -275 253 136 91 15 chr21 18162493 18162559 -26745011 + MLT1F LTR MaLR 464 534 -8 285 208 10 69 chr21 18162714 18162815 -26744755 - MLT1K LTR MaLR -2 586 492 592 263 20 0 chr21 18162961 18163113 -26744457 - MIR SINE MIR -1 261 107 233 196 0 0 chr21 18163140 18163186 -26744384 + L1MC4 LINE L1 6653 6698 -1344 24 32 0 0 chr21 18163933 18163964 -26743606 + AT_rich Low_complexity Low_complexity 1 31 0 594 283 204 41 chr21 18163986 18164378 -26743192 + L2 LINE L2 2855 3310 -3 262 253 51 13 chr21 18164740 18164819 -26742751 - MIR SINE MIR -73 189 108 2554 37 0 34 chr21 18164897 18165218 -26742352 - AluY SINE Alu 0 311 2 373 340 42 11 chr21 18166680 18166871 -26740699 - L1MCc LINE L1 -5949 474 278 258 148 0 0 chr21 18167489 18167543 -26740027 + (TA)n Simple_repeat Simple_repeat 1 54 0 21 71 0 0 chr21 18167854 18167896 -26739674 + AT_rich Low_complexity Low_complexity 1 42 0 24 0 0 0 chr21 18168329 18168353 -26739217 + AT_rich Low_complexity Low_complexity 1 24 0 887 85 0 8 chr21 18169785 18169914 -26737656 + L1MA4 LINE L1 6162 6289 -11 323 252 103 19 chr21 18170402 18170509 -26737061 - MER119 DNA MER1_type -12 571 456 22 35 0 0 chr21 18171011 18171040 -26736530 + AT_rich Low_complexity Low_complexity 1 29 0 21 57 0 0 chr21 18171294 18171329 -26736241 + AT_rich Low_complexity Low_complexity 1 35 0 200 203 17 34 chr21 18171350 18171409 -26736161 + (ATTG)n Simple_repeat Simple_repeat 4 61 0 5847 179 220 20 chr21 18171444 18172906 -26734664 - MER52A LTR ERV1 0 1755 3 1562 132 38 7 chr21 18172908 18173386 -26734184 - MER52A-int LTR ERV1 0 7091 6563 1038 172 98 8 chr21 18173373 18173654 -26733916 - MER52-int LTR ERV1 -3818 3273 2930 * 559 128 0 0 chr21 18173654 18173747 -26733823 + MLT2A2 LTR ERVL 1 93 -360 1095 150 0 0 chr21 18173747 18173907 -26733663 - THE1B LTR MaLR 0 364 205 * 1748 180 0 58 chr21 18173904 18174248 -26733322 - MER52A LTR ERV1 -1008 747 424 584 244 6 65 chr21 18174239 18174407 -26733163 - MER52A LTR ERV1 -1581 174 17 * 1333 196 18 97 chr21 18174512 18174905 -26732665 + MLT1A1 LTR MaLR 4 365 0 1933 241 50 63 chr21 18174969 18175240 -26732330 - MER76 LTR ERV -78 610 337 2229 118 0 0 chr21 18175240 18175544 -26732026 + AluSx SINE Alu 1 304 -8 1933 241 50 63 chr21 18175544 18175890 -26731680 - MER76 LTR ERV -351 337 1 225 0 0 0 chr21 18175950 18175975 -26731595 + (A)n Simple_repeat Simple_repeat 1 25 0 28 86 0 0 chr21 18176446 18176516 -26731054 + AT_rich Low_complexity Low_complexity 1 70 0 24 77 0 0 chr21 18177894 18177946 -26729624 + AT_rich Low_complexity Low_complexity 1 52 0 23 86 0 0 chr21 18178200 18178258 -26729312 + AT_rich Low_complexity Low_complexity 1 58 0 229 301 110 0 chr21 18178709 18178782 -26728788 + L2 LINE L2 3228 3308 -5 201 229 0 0 chr21 18179084 18179119 -26728451 + (TG)n Simple_repeat Simple_repeat 2 36 0 21 36 0 0 chr21 18179424 18179452 -26728118 + AT_rich Low_complexity Low_complexity 1 28 0 2214 90 7 10 chr21 18180285 18180586 -26726984 - AluSc SINE Alu -9 300 1 245 333 56 41 chr21 18180649 18180844 -26726726 + L1MC/D LINE L1 5528 5725 -2083 602 293 27 31 chr21 18181550 18181772 -26725798 - MIR SINE MIR -10 252 32 34 24 0 0 chr21 18181778 18181819 -26725751 + AT_rich Low_complexity Low_complexity 1 41 0 2165 181 28 32 chr21 18182088 18182524 -26725046 + Tigger2a DNA MER2_type 1 434 0 22 0 0 0 chr21 18182613 18182635 -26724935 + AT_rich Low_complexity Low_complexity 1 22 0 33 43 0 0 chr21 18184732 18184779 -26722791 + AT_rich Low_complexity Low_complexity 1 47 0 354 98 0 0 chr21 18185365 18185416 -26722154 + (TG)n Simple_repeat Simple_repeat 2 52 0 189 246 0 0 chr21 18185770 18185835 -26721735 + (CA)n Simple_repeat Simple_repeat 2 66 0 228 35 0 0 chr21 18186643 18186672 -26720898 + (TC)n Simple_repeat Simple_repeat 1 29 0 207 0 0 0 chr21 18186671 18186694 -26720876 + (CA)n Simple_repeat Simple_repeat 1 23 0 * 1122 203 114 5 chr21 18187034 18187438 -26720132 + Charlie1b DNA MER1_type 70 517 -6 221 359 66 0 chr21 18187871 18187977 -26719593 + L2 LINE L2 2256 2368 -946 763 259 82 22 chr21 18188042 18188397 -26719173 + L1MB7 LINE L1 1137 1512 -5030 1605 244 29 61 chr21 18188413 18189087 -26718483 + L1MB7 LINE L1 2586 3201 -3443 * 5402 235 85 68 chr21 18189083 18189695 -26717875 + L1MB7 LINE L1 3047 3648 -3034 1020 152 0 0 chr21 18189695 18189874 -26717696 + AluSg/x SINE Alu 135 313 0 5402 235 85 68 chr21 18189874 18190249 -26717321 + L1MB7 LINE L1 3648 4015 -2667 2207 100 0 3 chr21 18190249 18190550 -26717020 + AluY SINE Alu 1 300 -11 5402 235 85 68 chr21 18190550 18190812 -26716758 + L1MB7 LINE L1 4015 4271 -2411 207 114 0 0 chr21 18190812 18190847 -26716723 + (CAAAA)n Simple_repeat Simple_repeat 1 35 0 5402 235 85 68 chr21 18190847 18191128 -26716442 + L1MB7 LINE L1 4271 4546 -2136 315 0 0 0 chr21 18191128 18191163 -26716407 + (TAAA)n Simple_repeat Simple_repeat 3 37 0 5402 235 85 68 chr21 18191163 18191947 -26715623 + L1MB7 LINE L1 4546 5316 -1366 2086 117 0 3 chr21 18191947 18192237 -26715333 + AluSc SINE Alu 1 289 -20 5402 235 85 68 chr21 18192237 18192867 -26714703 + L1MB7 LINE L1 5316 5934 -748 1847 103 136 30 chr21 18192867 18193206 -26714364 - THE1C LTR MaLR 0 375 1 5402 235 85 68 chr21 18193206 18193677 -26713893 + L1MB7 LINE L1 5934 6668 -14 237 277 46 0 chr21 18194460 18194525 -26713045 - HAL1b LINE L1 -882 466 399 4690 169 42 4 chr21 18195001 18196531 -26711039 + L1PA16 LINE L1 4488 6068 -98 301 333 100 60 chr21 18197317 18197566 -26710004 + MIR SINE MIR 1 259 -3 2267 65 0 3 chr21 18197680 18197997 -26709573 - AluY SINE Alu 0 311 1 38 96 0 0 chr21 18198694 18198809 -26708761 + AT_rich Low_complexity Low_complexity 1 115 0 22 56 0 0 chr21 18199596 18199632 -26707938 + AT_rich Low_complexity Low_complexity 1 36 0 24 0 0 0 chr21 18200146 18200170 -26707400 + AT_rich Low_complexity Low_complexity 1 24 0 220 204 0 0 chr21 18201615 18201659 -26705911 + (CAA)n Simple_repeat Simple_repeat 2 45 0 556 316 5 16 chr21 18201917 18202107 -26705463 + L2 LINE L2 2272 2459 -855 518 272 39 28 chr21 18202183 18202363 -26705207 - MLT1H LTR MaLR -335 214 33 293 93 19 0 chr21 18202736 18202790 -26704780 + (TG)n Simple_repeat Simple_repeat 1 55 0 5613 100 27 28 chr21 18202885 18203247 -26704323 + L1PA13 LINE L1 5111 5472 -691 2162 102 3 0 chr21 18203247 18203531 -26704039 - AluY SINE Alu -26 285 1 5613 100 27 28 chr21 18203531 18204211 -26703359 + L1PA13 LINE L1 5472 6152 -11 2105 107 0 19 chr21 18205056 18205366 -26702204 + AluSg SINE Alu 1 304 -6 1348 228 44 15 chr21 18205640 18205971 -26701599 + MLT1A1 LTR MaLR 22 503 -2 28 29 0 0 chr21 18206277 18206312 -26701258 + AT_rich Low_complexity Low_complexity 1 35 0 23 0 0 0 chr21 18206423 18206446 -26701124 + AT_rich Low_complexity Low_complexity 1 23 0 27 49 0 0 chr21 18207034 18207075 -26700495 + AT_rich Low_complexity Low_complexity 1 41 0 375 275 231 43 chr21 18207306 18207652 -26699918 + MLT1J2 LTR MaLR 20 430 -20 1262 56 26 67 chr21 18208632 18208732 -26698838 - L1PA13 LINE L1 -2 6161 6071 1809 128 35 98 chr21 18208732 18209132 -26698438 + THE1C LTR MaLR 1 375 0 1262 56 26 67 chr21 18209132 18209226 -26698344 - L1PA13 LINE L1 -92 6071 5975 1960 126 0 3 chr21 18209226 18209512 -26698058 - AluSg SINE Alu -6 304 20 1718 166 130 38 chr21 18209937 18210162 -26697408 + MSTA LTR MaLR 1 204 -224 2335 61 3 0 chr21 18210162 18210459 -26697111 + AluY SINE Alu 2 299 -12 1718 166 130 38 chr21 18210459 18210625 -26696945 + MSTA LTR MaLR 204 428 0 460 337 96 11 chr21 18210813 18211178 -26696392 - L1MEc LINE L1 -4095 2301 1906 323 318 24 8 chr21 18211226 18211352 -26696218 - L1MEc LINE L1 -4584 1812 1685 1129 36 0 0 chr21 18211486 18211624 -26695946 - L1PA5 LINE L1 0 6154 6017 2775 209 11 68 chr21 18212258 18213023 -26694547 - L1MA7 LINE L1 -1 6290 5570 1925 183 39 13 chr21 18213292 18213681 -26693889 - MSTB LTR MaLR 0 426 28 1713 165 140 16 chr21 18214206 18214570 -26693000 + MSTA LTR MaLR 1 409 -19 1259 280 96 39 chr21 18215263 18215702 -26691868 - MLT1E LTR MaLR -129 464 1 27 29 0 0 chr21 18215962 18215996 -26691574 + AT_rich Low_complexity Low_complexity 1 34 0 298 350 12 55 chr21 18216855 18217018 -26690552 + L2 LINE L2 3125 3280 -33 513 141 7 42 chr21 18217123 18217265 -26690305 + CT-rich Low_complexity Low_complexity 2 138 0 252 0 0 0 chr21 18217263 18217291 -26690279 + (TC)n Simple_repeat Simple_repeat 1 28 0 * 1351 148 109 42 chr21 18217292 18217576 -26689994 - AluJb SINE Alu -9 303 1 222 91 0 0 chr21 18218040 18218073 -26689497 + (TAAA)n Simple_repeat Simple_repeat 4 36 0 459 316 30 23 chr21 18218169 18218470 -26689100 + L1PA12 LINE L1 1 303 -7278 6619 76 56 0 chr21 18219658 18221044 -26686526 - L1PA7 LINE L1 0 6154 4728 6626 82 5 16 chr21 18221044 18221982 -26685588 + L1PA7 LINE L1 3792 4719 -1427 3003 263 42 20 chr21 18221983 18223084 -26684486 - L1M4 LINE L1 -956 5190 4066 447 341 142 0 chr21 18223242 18223468 -26684102 - MIR SINE MIR 0 262 5 27 49 0 0 chr21 18223948 18223989 -26683581 + AT_rich Low_complexity Low_complexity 1 41 0 22 56 0 0 chr21 18224022 18224058 -26683512 + AT_rich Low_complexity Low_complexity 1 36 0 359 276 41 97 chr21 18224459 18224655 -26682915 + MIR SINE MIR 74 258 -4 48 67 0 0 chr21 18225268 18225358 -26682212 + AT_rich Low_complexity Low_complexity 1 90 0 2095 132 3 3 chr21 18225369 18225679 -26681891 + AluSx SINE Alu 1 310 -2 22 35 0 0 chr21 18225701 18225730 -26681840 + AT_rich Low_complexity Low_complexity 1 29 0 21 0 0 0 chr21 18226778 18226799 -26680771 + AT_rich Low_complexity Low_complexity 1 21 0 22 80 0 0 chr21 18227135 18227185 -26680385 + AT_rich Low_complexity Low_complexity 1 50 0 315 238 89 20 chr21 18228049 18228150 -26679420 - L1ME LINE L1 -460 5661 5554 2023 201 30 59 chr21 18228150 18228642 -26678928 - MER66B LTR ERV1 0 486 9 9057 162 32 32 chr21 18228725 18229484 -26678086 - Ricksha DNA DNA -8 3238 2480 1465 179 0 39 chr21 18229484 18229769 -26677801 + AluJo SINE Alu 14 287 -25 9057 162 32 32 chr21 18229769 18230791 -26676779 - Ricksha DNA DNA -765 2481 1457 2004 89 0 11 chr21 18230793 18231062 -26676508 + AluSx SINE Alu 3 268 -44 234 0 0 0 chr21 18231074 18231100 -26676470 + (CAAA)n Simple_repeat Simple_repeat 4 29 0 892 106 15 0 chr21 18231137 18231269 -26676301 - L1PA13 LINE L1 -261 5902 5769 1390 114 27 0 chr21 18231269 18231488 -26676082 + L1PA13 LINE L1 5939 6163 0 1458 196 7 0 chr21 18231513 18231788 -26675782 + AluJb SINE Alu 12 288 -24 3045 149 21 4 chr21 18231789 18232307 -26675263 - Ricksha DNA DNA -1814 1432 906 328 214 139 48 chr21 18232308 18232495 -26675075 - MLT2B1 LTR ERVL 0 520 317 1906 195 181 10 chr21 18232498 18232979 -26674591 - Ricksha DNA DNA -2645 601 39 649 276 67 30 chr21 18236043 18236340 -26671230 - L1MC4 LINE L1 -970 7072 6765 1789 269 36 18 chr21 18237551 18238225 -26669345 + L1MC1 LINE L1 4312 4997 -1149 237 119 95 0 chr21 18238214 18238256 -26669314 + L1MC/D LINE L1 5546 5591 -2451 * 4484 165 37 9 chr21 18238256 18239104 -26668466 + L1MC1 LINE L1 5463 6333 0 326 205 60 0 chr21 18240057 18240140 -26667430 - LTR49 LTR ERV1 0 595 508 * 607 244 132 12 chr21 18240121 18240469 -26667101 - LTR48B LTR ERV1 -188 456 48 1443 229 31 11 chr21 18240558 18240916 -26666654 - MLT1A1 LTR MaLR 0 365 1 785 278 54 57 chr21 18241041 18241466 -26666104 + MLT2C2 LTR ERVL 1 424 -40 23 33 0 0 chr21 18241490 18241520 -26666050 + AT_rich Low_complexity Low_complexity 1 30 0 241 176 9 37 chr21 18241521 18241629 -26665941 + (TA)n Simple_repeat Simple_repeat 1 105 0 22 0 0 0 chr21 18241825 18241847 -26665723 + AT_rich Low_complexity Low_complexity 1 22 0 27 29 0 0 chr21 18242095 18242129 -26665441 + AT_rich Low_complexity Low_complexity 1 34 0 657 260 122 6 chr21 18242762 18242943 -26664627 - LTR33 LTR ERVL -318 203 2 23 33 0 0 chr21 18243753 18243783 -26663787 + AT_rich Low_complexity Low_complexity 1 30 0 22 0 0 0 chr21 18244560 18244582 -26662988 + AT_rich Low_complexity Low_complexity 1 22 0 408 190 140 20 chr21 18245730 18245939 -26661631 + FLAM_C SINE Alu 32 252 0 839 169 0 0 chr21 18245943 18246079 -26661491 + FRAM SINE Alu 24 159 -17 2322 62 0 0 chr21 18246955 18247247 -26660323 - AluY SINE Alu -19 292 1 871 333 121 5 chr21 18249554 18250246 -26657324 + L2 LINE L2 2531 3310 -3 247 224 0 82 chr21 18250820 18250918 -26656652 - L1MC4 LINE L1 -1339 6703 6614 * 254 299 0 0 chr21 18250844 18250931 -26656639 + L1MC4 LINE L1 6614 6700 -1342 278 132 53 0 chr21 18252230 18252306 -26655264 + (TA)n Simple_repeat Simple_repeat 1 80 0 376 326 150 14 chr21 18254360 18254654 -26652916 + MLT1J LTR MaLR 20 353 -158 990 98 6 12 chr21 18255870 18256034 -26651536 + (TTTC)n Simple_repeat Simple_repeat 2 164 0 319 342 32 16 chr21 18256682 18256869 -26650701 - MLT1C-int LTR MaLR -489 882 693 1407 291 40 30 chr21 18257052 18257358 -26650212 - MLT1C-int LTR MaLR -771 600 284 1969 120 0 10 chr21 18257358 18257658 -26649912 - AluSc SINE Alu -10 299 3 1407 291 40 30 chr21 18257658 18257943 -26649627 - MLT1C-int LTR MaLR -1087 284 3 256 267 59 30 chr21 18258677 18258778 -26648792 - MIR SINE MIR -48 214 111 192 40 0 0 chr21 18258934 18258959 -26648611 + (TG)n Simple_repeat Simple_repeat 1 25 0 21 0 0 0 chr21 18259255 18259276 -26648294 + AT_rich Low_complexity Low_complexity 1 21 0 552 325 69 15 chr21 18259378 18259652 -26647918 + MLT1J1 LTR MaLR 15 303 -143 185 61 30 0 chr21 18259718 18259732 -26647838 + (CAAAAA)n Simple_repeat Simple_repeat 2 14 -21 2505 41 0 16 chr21 18259732 18260048 -26647522 + AluY SINE Alu 1 311 0 185 61 30 0 chr21 18260048 18260066 -26647504 + (CAAAAA)n Simple_repeat Simple_repeat 14 35 0 22 70 0 0 chr21 18261544 18261587 -26645983 + AT_rich Low_complexity Low_complexity 1 43 0 25 0 0 0 chr21 18261628 18261653 -26645917 + AT_rich Low_complexity Low_complexity 1 25 0 32 56 0 14 chr21 18261816 18261855 -26645715 + AT_rich Low_complexity Low_complexity 1 40 -30 6107 179 20 1 chr21 18261855 18261922 -26645648 - L1PA11 LINE L1 -2 6172 6108 1905 109 52 80 chr21 18261922 18262308 -26645262 - THE1C LTR MaLR 0 375 1 6107 179 20 1 chr21 18262308 18264240 -26643330 - L1PA11 LINE L1 -66 6108 4182 32 56 0 14 chr21 18264240 18264271 -26643299 + AT_rich Low_complexity Low_complexity 40 70 0 207 0 0 0 chr21 18264274 18264297 -26643273 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 1490 58 0 11 chr21 18264297 18264487 -26643083 - L1PA3 LINE L1 -6 6149 5962 4732 144 19 5 chr21 18264495 18265147 -26642423 - L1PA11 LINE L1 -1982 4164 3498 207 0 0 0 chr21 18265147 18265170 -26642400 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 4732 144 19 5 chr21 18265170 18265300 -26642270 - L1PA11 LINE L1 -2648 3498 3371 2440 212 2 0 chr21 18265300 18265743 -26641827 - MLT1C LTR MaLR -15 452 9 24 0 0 0 chr21 18267286 18267310 -26640260 + AT_rich Low_complexity Low_complexity 1 24 0 207 0 0 0 chr21 18267310 18267333 -26640237 + (TG)n Simple_repeat Simple_repeat 2 24 0 21 82 0 0 chr21 18268431 18268480 -26639090 + AT_rich Low_complexity Low_complexity 1 49 0 351 275 139 35 chr21 18268857 18269115 -26638455 + MLT1J LTR MaLR 1 285 -226 3452 130 32 2 chr21 18270792 18271354 -26636216 - L1PA10 LINE L1 -1169 4977 4399 5644 111 34 12 chr21 18271358 18272528 -26635042 + L1PA10 LINE L1 4979 6167 -1 680 211 36 12 chr21 18273115 18273246 -26634324 - L1M2 LINE L1 -492 5808 5669 2100 114 4 0 chr21 18273246 18273572 -26633998 - AluSq SINE Alu 0 328 2 680 211 36 12 chr21 18273572 18273626 -26633944 - L1M2 LINE L1 -631 5669 5618 253 89 0 0 chr21 18273692 18273737 -26633833 - LTR66 LTR ERVL -165 445 401 227 216 0 0 chr21 18273739 18273790 -26633780 + L1MC4 LINE L1 6653 6703 -1339 181 225 12 12 chr21 18273814 18273894 -26633676 + (TA)n Simple_repeat Simple_repeat 2 81 0 22 35 0 0 chr21 18273894 18273923 -26633647 + AT_rich Low_complexity Low_complexity 1 29 0 21 0 0 0 chr21 18274060 18274081 -26633489 + AT_rich Low_complexity Low_complexity 1 21 0 8608 179 51 29 chr21 18274147 18277044 -26630526 - L1MA6 LINE L1 0 6504 3556 14491 25 1 0 chr21 18277072 18279552 -26628018 - L1PA4 LINE L1 -3 6152 3671 4663 26 0 0 chr21 18279552 18280118 -26627452 + L1PA4 LINE L1 3095 3660 -2486 3183 237 51 42 chr21 18280116 18281259 -26626311 - L1MA6 LINE L1 -2822 3528 2376 * 696 221 28 0 chr21 18281285 18281430 -26626140 - FAM SINE Alu -23 162 14 2685 283 54 42 chr21 18281442 18282000 -26625570 - L1MA6 LINE L1 -3959 2391 1841 213 39 0 0 chr21 18282000 18282026 -26625544 + (TG)n Simple_repeat Simple_repeat 1 26 0 2685 283 54 42 chr21 18282026 18283559 -26624011 - L1MA6 LINE L1 -4509 1841 626 1601 323 56 33 chr21 18283657 18284391 -26623179 - L1MA6 LINE L1 -5526 755 5 27 0 0 0 chr21 18284441 18284468 -26623102 + AT_rich Low_complexity Low_complexity 1 27 0 21 0 0 0 chr21 18284502 18284523 -26623047 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr21 18284845 18284866 -26622704 + AT_rich Low_complexity Low_complexity 1 21 0 22 70 0 0 chr21 18284915 18284958 -26622612 + AT_rich Low_complexity Low_complexity 1 43 0 22 0 0 0 chr21 18284985 18285007 -26622563 + AT_rich Low_complexity Low_complexity 1 22 0 625 277 115 28 chr21 18285365 18285722 -26621848 - L1ME3A LINE L1 -8 6162 5775 362 254 35 12 chr21 18285789 18285973 -26621597 - L1ME3A LINE L1 -663 5501 5300 2281 186 33 22 chr21 18285975 18286431 -26621139 + MLT1C LTR MaLR 1 461 -6 1154 296 105 36 chr21 18286444 18287555 -26620015 - L1ME3A LINE L1 -852 5294 4107 251 265 92 0 chr21 18288001 18288099 -26619471 + MIR SINE MIR 153 259 -3 459 52 0 0 chr21 18288656 18288714 -26618856 + (TTCC)n Simple_repeat Simple_repeat 4 61 0 2055 138 0 3 chr21 18288720 18289031 -26618539 - AluSx SINE Alu -2 310 1 1542 84 5 0 chr21 18289168 18289370 -26618200 - AluSp SINE Alu -110 203 1 26 30 0 0 chr21 18289402 18289435 -26618135 + AT_rich Low_complexity Low_complexity 1 33 0 6065 112 11 34 chr21 18289443 18290331 -26617239 - L1MA3 LINE L1 0 6305 5441 1498 204 0 44 chr21 18290331 18290649 -26616921 - AluJb SINE Alu -8 304 1 6065 112 11 34 chr21 18290649 18290751 -26616819 - L1MA3 LINE L1 -864 5441 5338 1541 206 24 5 chr21 18290752 18291131 -26616439 + L1MA3 LINE L1 4948 5333 -813 326 313 23 0 chr21 18291656 18291787 -26615783 - L1ME3A LINE L1 -2215 3931 3798 853 271 62 21 chr21 18292012 18292523 -26615047 - MLT1E LTR MaLR 0 593 52 25 51 0 0 chr21 18292598 18292637 -26614933 + AT_rich Low_complexity Low_complexity 1 39 0 4736 208 30 17 chr21 18292841 18294360 -26613210 - L1MC1 LINE L1 -5 6328 4788 646 200 0 15 chr21 18294608 18294738 -26612832 + FLAM_C SINE Alu 4 131 -12 327 146 0 0 chr21 18294752 18294807 -26612763 + (A)n Simple_repeat Simple_repeat 1 55 0 367 238 126 13 chr21 18294807 18294958 -26612612 + L1M4 LINE L1 4651 4818 -1328 268 303 251 11 chr21 18295650 18295825 -26611745 - MIR SINE MIR -10 252 36 1390 105 16 89 chr21 18296260 18296508 -26611062 + MER30 DNA MER1_type 1 230 0 228 286 31 68 chr21 18296558 18296719 -26610851 + L2 LINE L2 3028 3182 -131 642 347 65 28 chr21 18296723 18297152 -26610418 - LTR16B LTR ERVL 0 464 20 184 333 83 0 chr21 18297179 18297275 -26610295 + L2 LINE L2 3169 3272 0 202 311 0 0 chr21 18299391 18299452 -26608118 - MIR SINE MIR -84 178 118 226 257 68 0 chr21 18299578 18299652 -26607918 + MLT1J LTR MaLR 8 86 -509 732 279 93 0 chr21 18299777 18299992 -26607578 + MLT1G LTR MaLR 356 590 0 450 286 49 105 chr21 18299994 18300068 -26607502 + MLT1J LTR MaLR 128 205 -306 2186 95 3 13 chr21 18300068 18300399 -26607171 - AluY SINE Alu 0 311 1 450 286 49 105 chr21 18300399 18300694 -26606876 + MLT1J LTR MaLR 205 476 -35 223 254 159 0 chr21 18300743 18300806 -26606764 - MIR SINE MIR -157 105 33 2889 93 37 9 chr21 18302258 18302297 -26605273 - MLT2A1 LTR ERVL 0 444 408 540 116 0 0 chr21 18302297 18302392 -26605178 + (TAGA)n Simple_repeat Simple_repeat 3 97 0 2889 93 37 9 chr21 18302392 18302784 -26604786 - MLT2A1 LTR ERVL -36 408 1 2384 53 0 0 chr21 18302799 18303110 -26604460 - AluY SINE Alu 0 311 1 293 100 20 0 chr21 18303693 18303743 -26603827 + (TG)n Simple_repeat Simple_repeat 2 52 0 23 54 0 0 chr21 18303937 18303974 -26603596 + AT_rich Low_complexity Low_complexity 1 37 0 229 400 9 9 chr21 18304944 18305049 -26602521 + MIR SINE MIR 34 138 -70 22 0 0 0 chr21 18305110 18305132 -26602438 + AT_rich Low_complexity Low_complexity 1 22 0 2182 107 16 0 chr21 18305196 18305504 -26602066 - AluSp SINE Alu 0 313 1 499 233 23 90 chr21 18306667 18306830 -26600740 + MLT1G LTR MaLR 1 119 -411 5344 218 76 40 chr21 18306830 18307055 -26600515 - L1MC3 LINE L1 -297 7906 7691 2230 69 0 0 chr21 18307055 18307329 -26600241 - AluY SINE Alu -3 308 35 5344 218 76 40 chr21 18307329 18308664 -26598906 - L1MC3 LINE L1 -512 7691 6289 3594 251 42 31 chr21 18308664 18310385 -26597185 - L1MC3 LINE L1 -746 5818 4308 24 0 0 0 chr21 18310425 18310449 -26597121 + AT_rich Low_complexity Low_complexity 1 24 0 405 0 0 0 chr21 18310449 18310494 -26597076 + (TAGA)n Simple_repeat Simple_repeat 4 48 0 249 232 29 0 chr21 18310527 18310596 -26596974 - L1MC3 LINE L1 -2286 4278 4208 1076 281 84 21 chr21 18310606 18311459 -26596111 - L1MC3 LINE L1 -2576 3988 691 365 235 37 0 chr21 18311495 18311576 -26595994 + MER82 DNA MER2_type 60 143 -510 1523 239 18 51 chr21 18312061 18312509 -26595061 + MER82 DNA MER2_type 215 647 -6 1165 283 71 65 chr21 18312518 18312884 -26594686 - L1MC3 LINE L1 -5360 685 312 2065 151 0 0 chr21 18312884 18313188 -26594382 + AluSq SINE Alu 3 306 -7 1165 283 71 65 chr21 18313188 18313437 -26594133 - L1MC3 LINE L1 -5733 312 66 27 29 0 0 chr21 18313493 18313527 -26594043 + AT_rich Low_complexity Low_complexity 1 34 0 1579 261 4 41 chr21 18313597 18314061 -26593509 - LTR2 LTR ERV1 0 449 3 13485 150 12 1 chr21 18314063 18316213 -26591357 - Harlequin LTR ERV1 -1 6895 4721 9693 201 28 10 chr21 18316246 18318137 -26589433 - HERVE LTR ERV1 -5888 1925 1 1779 231 7 41 chr21 18318137 18318600 -26588970 - LTR2 LTR ERV1 0 449 3 365 298 107 25 chr21 18318739 18319102 -26588468 - L1ME3A LINE L1 -230 5940 5548 225 291 106 43 chr21 18319233 18319374 -26588196 + L1MC4a LINE L1 5631 5780 -2028 252 241 17 60 chr21 18319556 18319672 -26587898 + L1MC4a LINE L1 6083 6193 -1615 2445 37 0 17 chr21 18320253 18320550 -26587020 + AluY SINE Alu 1 292 -19 1081 242 4 17 chr21 18320789 18321055 -26586515 - AluJb SINE Alu 0 312 50 284 326 141 5 chr21 18322055 18322239 -26585331 - L3 LINE CR1 -115 1462 1254 1182 212 118 65 chr21 18322934 18323356 -26584214 + MER66A LTR ERV1 98 478 0 427 314 11 54 chr21 18323831 18324016 -26583554 + MIR SINE MIR 86 262 0 29 47 0 0 chr21 18324097 18324140 -26583430 + AT_rich Low_complexity Low_complexity 1 43 0 276 218 0 35 chr21 18324491 18324578 -26582992 + CT-rich Low_complexity Low_complexity 1 84 0 369 238 25 41 chr21 18326049 18326171 -26581399 + MER20 DNA MER1_type 99 218 -1 324 120 0 0 chr21 18326791 18326841 -26580729 + (CA)n Simple_repeat Simple_repeat 2 51 0 1299 193 96 43 chr21 18327271 18327645 -26579925 - MSTD LTR MaLR 0 396 3 192 284 75 82 chr21 18328164 18328298 -26579272 + L2 LINE L2 3104 3236 -36 866 154 13 98 chr21 18328670 18328904 -26578666 - L1MA8 LINE L1 -53 6238 6025 3184 197 10 13 chr21 18328924 18329194 -26578376 - L1MA8 LINE L1 -53 6238 5969 1278 233 38 10 chr21 18329194 18329482 -26578088 - AluJo SINE Alu -13 299 4 3184 197 10 13 chr21 18329482 18329891 -26577679 - L1MA8 LINE L1 -322 5969 5561 207 100 0 0 chr21 18330473 18330503 -26577067 + (TTA)n Simple_repeat Simple_repeat 2 31 0 958 163 0 0 chr21 18330505 18330658 -26576912 - FRAM SINE Alu -30 146 1 180 0 0 0 chr21 18330666 18330686 -26576884 + (TAA)n Simple_repeat Simple_repeat 3 22 0 2154 135 0 0 chr21 18330696 18331008 -26576562 + AluSx SINE Alu 1 312 0 703 234 7 7 chr21 18331018 18331163 -26576407 + FRAM SINE Alu 1 145 -31 21 36 0 0 chr21 18332927 18332955 -26574615 + AT_rich Low_complexity Low_complexity 1 28 0 2458 41 3 3 chr21 18332955 18333250 -26574320 + AluY SINE Alu 1 295 -16 1505 173 78 33 chr21 18333423 18333782 -26573788 + THE1C LTR MaLR 1 375 0 24 32 0 0 chr21 18334090 18334121 -26573449 + AT_rich Low_complexity Low_complexity 1 31 0 1265 261 18 5 chr21 18335539 18335938 -26571632 - L1MD3 LINE L1 -1 7994 7591 530 216 188 75 chr21 18336006 18336219 -26571351 + L1MC3 LINE L1 6572 6783 -1002 2228 246 118 71 chr21 18336229 18337009 -26570561 - L1MC3 LINE L1 -435 7560 6818 2429 71 0 0 chr21 18337009 18337317 -26570253 + AluY SINE Alu 1 308 -3 2228 246 118 71 chr21 18337317 18337576 -26569994 - L1MC3 LINE L1 -1177 6818 6573 2482 47 7 0 chr21 18337576 18337874 -26569696 - AluY SINE Alu -11 300 1 2228 246 118 71 chr21 18337874 18338203 -26569367 - L1MC3 LINE L1 -1422 6573 6092 436 384 21 12 chr21 18339094 18339336 -26568234 + L2 LINE L2 892 1135 -2179 33 73 0 0 chr21 18339505 18339573 -26567997 + AT_rich Low_complexity Low_complexity 1 68 0 297 229 64 0 chr21 18339813 18339922 -26567648 - LOR1-int LTR ERV1 -6698 1422 1307 3521 63 0 0 chr21 18339930 18340377 -26567193 - L1PA7 LINE L1 -7 6147 5701 514 46 0 0 chr21 18340377 18340442 -26567128 + L1PA7 LINE L1 5631 5695 -477 1656 187 30 0 chr21 18340769 18341103 -26566467 - L1MC1 LINE L1 -1 7763 6133 24 85 0 0 chr21 18341160 18341219 -26566351 + AT_rich Low_complexity Low_complexity 1 59 0 239 356 153 0 chr21 18341820 18341938 -26565632 - L2 LINE L2 0 3272 3137 1123 251 28 62 chr21 18344272 18344680 -26562890 - MLT1B LTR MaLR 0 593 1 961 52 0 15 chr21 18345443 18345577 -26561993 + (GAAA)n Simple_repeat Simple_repeat 1 132 0 1282 206 49 31 chr21 18346175 18346461 -26561109 + MLT2B1 LTR ERVL 16 306 -214 25 0 0 0 chr21 18347312 18347337 -26560233 + AT_rich Low_complexity Low_complexity 1 25 0 21 0 0 0 chr21 18347522 18347543 -26560027 + AT_rich Low_complexity Low_complexity 1 21 0 34 42 0 0 chr21 18347616 18347664 -26559906 + AT_rich Low_complexity Low_complexity 1 48 0 2173 217 42 42 chr21 18348542 18348849 -26558721 + MLT2B1 LTR ERVL 1 310 -210 7999 162 106 31 chr21 18348849 18349297 -26558273 - MER52A LTR ERV1 0 1755 1342 2275 114 0 0 chr21 18349297 18349604 -26557966 - AluSq SINE Alu -6 307 1 7999 162 106 31 chr21 18349604 18350788 -26556782 - MER52A LTR ERV1 -413 1342 1 2173 217 42 42 chr21 18350788 18351000 -26556570 + MLT2B1 LTR ERVL 309 520 0 258 314 36 0 chr21 18352420 18352557 -26555013 - L1M4 LINE L1 -1874 4272 4131 2012 111 4 0 chr21 18352566 18352845 -26554725 - AluSg SINE Alu -11 299 20 734 73 29 15 chr21 18352959 18353095 -26554475 + (TCTA)n Simple_repeat Simple_repeat 1 138 0 821 285 119 19 chr21 18353134 18353781 -26553789 + L1ME1 LINE L1 2177 2858 -3357 457 222 128 44 chr21 18353781 18353961 -26553609 + L1ME1 LINE L1 4354 4548 -1667 265 182 26 13 chr21 18353972 18354049 -26553521 + (TA)n Simple_repeat Simple_repeat 2 79 0 391 243 43 108 chr21 18354054 18354239 -26553331 + L1ME1 LINE L1 4565 4737 -1478 39 50 0 0 chr21 18354437 18354497 -26553073 + AT_rich Low_complexity Low_complexity 1 60 0 2279 131 16 22 chr21 18354831 18355197 -26552373 + THE1B LTR MaLR 1 364 0 11583 96 7 1 chr21 18355197 18356768 -26550802 + THE1B-int LTR MaLR 1 1580 0 2108 153 16 25 chr21 18356768 18357135 -26550435 + THE1B LTR MaLR 1 364 0 24 0 0 0 chr21 18357345 18357369 -26550201 + AT_rich Low_complexity Low_complexity 1 24 0 1573 120 0 4 chr21 18357599 18357840 -26549730 - L1PA13 LINE L1 -4 6159 5920 1273 99 11 5 chr21 18357840 18358031 -26549539 + L1PA13 LINE L1 5728 5919 -249 2399 60 0 17 chr21 18358191 18358491 -26549079 - AluY SINE Alu -16 295 1 2662 237 19 38 chr21 18359422 18360191 -26547379 + L1ME1 LINE L1 5477 6231 -4 216 97 0 0 chr21 18360827 18360858 -26546712 + (ATTG)n Simple_repeat Simple_repeat 4 34 0 624 164 27 9 chr21 18361167 18361277 -26546293 - FRAM SINE Alu -22 154 43 1918 177 5 18 chr21 18361882 18361931 -26545639 - L1MB3 LINE L1 -2 6181 6133 2397 130 67 24 chr21 18361931 18362347 -26545223 + MER57B LTR ERV1 1 434 0 1918 177 5 18 chr21 18362347 18362681 -26544889 - L1MB3 LINE L1 -50 6133 5803 2034 240 27 4 chr21 18362715 18363270 -26544300 - L1MB3 LINE L1 -837 5309 4742 347 147 133 0 chr21 18363269 18363344 -26544226 + L1M3 LINE L1 5350 5434 -749 * 8195 228 31 16 chr21 18363340 18366333 -26541237 + L1PA13 LINE L1 695 3755 -3042 201 39 0 0 chr21 18366333 18366359 -26541211 + (CAA)n Simple_repeat Simple_repeat 3 28 0 8195 228 31 16 chr21 18366359 18366594 -26540976 + L1PA13 LINE L1 3755 3985 -2812 1833 147 52 38 chr21 18366596 18366669 -26540901 + THE1C LTR MaLR 3 74 -301 5203 97 12 40 chr21 18366669 18367471 -26540099 - LTR17 LTR ERV1 0 780 1 1833 147 52 38 chr21 18367471 18367765 -26539805 + THE1C LTR MaLR 74 375 0 8425 150 66 11 chr21 18367765 18369263 -26538307 + THE1C-int LTR MaLR 1 1580 0 682 96 85 28 chr21 18369263 18369409 -26538161 + THE1B LTR MaLR 1 109 -255 412 297 67 68 chr21 18369412 18370609 -26536961 - L1MDb LINE L1 -4210 2051 819 747 311 156 27 chr21 18370634 18371262 -26536308 - L1MDb LINE L1 -5341 729 21 263 91 0 0 chr21 18371765 18371798 -26535772 - U2 snRNA snRNA -155 33 1 28 61 0 0 chr21 18372323 18372372 -26535198 + AT_rich Low_complexity Low_complexity 1 49 0 213 211 0 0 chr21 18372372 18372424 -26535146 + (TA)n Simple_repeat Simple_repeat 1 52 0 2961 272 59 53 chr21 18372483 18373051 -26534519 + L1MB8 LINE L1 17 580 -6279 2034 110 0 0 chr21 18373051 18373332 -26534238 + AluSg SINE Alu 30 310 0 2961 272 59 53 chr21 18373332 18373919 -26533651 + L1MB8 LINE L1 580 1179 -5680 398 270 51 89 chr21 18373923 18374238 -26533332 + L1MB8 LINE L1 2512 2814 -4324 1521 207 18 67 chr21 18374366 18374619 -26532951 + MER39 LTR ERV1 340 570 -137 1692 181 0 21 chr21 18374619 18374942 -26532628 - AluSx SINE Alu 0 319 3 1521 207 18 67 chr21 18374942 18375074 -26532496 + MER39 LTR ERV1 570 707 0 904 267 80 23 chr21 18375074 18375627 -26531943 + L1MB8 LINE L1 2813 3362 -3595 573 120 11 0 chr21 18375633 18375725 -26531845 + MLT2B2 LTR ERVL 5 97 -418 2779 161 26 6 chr21 18375772 18376268 -26531302 - MER84 LTR ERV1 0 507 2 450 111 42 14 chr21 18376268 18376340 -26531230 - MER84 LTR ERVI -433 74 1 541 203 110 0 chr21 18376343 18376461 -26531109 + MLT2B1 LTR ERVL 312 442 -78 209 57 29 0 chr21 18376496 18376531 -26531039 + (TAGA)n Simple_repeat Simple_repeat 3 38 0 1448 218 32 35 chr21 18376578 18377070 -26530500 + L1MB8 LINE L1 3371 3861 -3096 1261 191 131 3 chr21 18377070 18377352 -26530218 + MLT1B LTR MaLR 1 318 -72 1650 274 75 23 chr21 18377427 18378216 -26529354 + L1MB8 LINE L1 3858 4687 -2270 3071 226 69 39 chr21 18378231 18378799 -26528771 + L1MB8 LINE L1 4924 5473 -1516 1641 191 7 7 chr21 18378799 18379098 -26528472 + AluJo SINE Alu 6 304 -8 3071 226 69 39 chr21 18379098 18379937 -26527633 + L1MB8 LINE L1 5473 6410 -579 2358 68 13 0 chr21 18379937 18380244 -26527326 + AluY SINE Alu 1 311 0 3071 226 69 39 chr21 18380244 18380837 -26526733 + L1MB8 LINE L1 6410 6984 -5 436 189 189 42 chr21 18381329 18381348 -26526222 - MLT1H LTR MaLR -8 547 532 5551 134 13 4 chr21 18381348 18382349 -26525221 + L1PA15 LINE L1 5157 6165 0 436 189 189 42 chr21 18382349 18382541 -26525029 - MLT1H LTR MaLR -23 532 305 2070 134 22 22 chr21 18382551 18383148 -26524422 + MER4A LTR ERV1 1 465 0 709 313 4 13 chr21 18383148 18383375 -26524195 - MLT1H LTR MaLR -253 296 72 212 274 98 39 chr21 18385146 18385299 -26522271 + L2 LINE L2 3148 3309 -4 3460 64 21 13 chr21 18386681 18387150 -26520420 + L1PA10 LINE L1 5694 6166 -2 21 36 0 0 chr21 18387160 18387188 -26520382 + AT_rich Low_complexity Low_complexity 1 28 0 24 32 0 0 chr21 18387251 18387282 -26520288 + AT_rich Low_complexity Low_complexity 1 31 0 23 0 0 0 chr21 18389225 18389248 -26518322 + AT_rich Low_complexity Low_complexity 1 23 0 319 313 18 9 chr21 18389769 18389881 -26517689 + MER5C DNA MER1_type 4 116 -208 21 0 0 0 chr21 18390051 18390072 -26517498 + AT_rich Low_complexity Low_complexity 1 21 0 259 303 97 71 chr21 18391048 18391470 -26516100 + L1M4 LINE L1 3787 4219 -1927 492 338 103 23 chr21 18391632 18392108 -26515462 + L1M4 LINE L1 4502 5015 -1131 1318 256 24 81 chr21 18392108 18392690 -26514880 + L1MC4 LINE L1 6530 7078 -964 245 306 74 16 chr21 18392728 18392849 -26514721 + L1MC4a LINE L1 7235 7362 -446 22 56 0 0 chr21 18392909 18392945 -26514625 + AT_rich Low_complexity Low_complexity 1 36 0 451 249 150 31 chr21 18392989 18393282 -26514288 + L1MC4 LINE L1 7584 7911 -131 203 200 67 0 chr21 18393285 18393330 -26514240 + (CATATA)n Simple_repeat Simple_repeat 5 52 0 317 217 65 51 chr21 18393336 18393474 -26514096 + L1MC4 LINE L1 7902 8041 -1 387 329 21 25 chr21 18393529 18393766 -26513804 - LTR16A1 LTR ERVL -15 442 207 243 0 0 0 chr21 18394097 18394124 -26513446 + (TG)n Simple_repeat Simple_repeat 1 27 0 7741 13 0 0 chr21 18394838 18396180 -26511390 - L1PA2 LINE L1 -2 6153 4814 8293 112 7 24 chr21 18396181 18397051 -26510519 + HSMAR1 DNA Mariner 96 941 -346 2272 87 3 3 chr21 18397051 18397360 -26510210 + AluY SINE Alu 1 309 -2 8293 112 7 24 chr21 18397360 18397702 -26509868 + HSMAR1 DNA Mariner 941 1287 0 208 143 0 0 chr21 18397802 18397837 -26509733 + (TG)n Simple_repeat Simple_repeat 2 36 0 25 51 0 0 chr21 18398194 18398233 -26509337 + AT_rich Low_complexity Low_complexity 1 39 0 28 29 0 0 chr21 18398783 18398818 -26508752 + AT_rich Low_complexity Low_complexity 1 35 0 352 325 58 21 chr21 18399056 18399435 -26508135 + L1ME4a LINE L1 5541 5933 -188 1518 154 65 94 chr21 18399662 18400064 -26507506 - MLT1B LTR MaLR 0 390 1 549 324 110 0 chr21 18400289 18400508 -26507062 + MIR SINE MIR 8 250 -12 193 311 33 0 chr21 18400720 18400781 -26506789 + MIR SINE MIR 79 141 -67 294 29 0 0 chr21 18401532 18401567 -26506003 + (TG)n Simple_repeat Simple_repeat 1 35 0 22 35 0 0 chr21 18401732 18401761 -26505809 + AT_rich Low_complexity Low_complexity 1 29 0 613 250 134 55 chr21 18401846 18402006 -26505564 + LTR33 LTR ERVL 1 147 -374 1369 195 19 73 chr21 18402006 18402416 -26505154 + MLT1B LTR MaLR 1 388 -2 613 250 134 55 chr21 18402416 18402547 -26505023 + LTR33 LTR ERVL 147 315 -206 1954 108 0 21 chr21 18402700 18402979 -26504591 - AluSq SINE Alu -17 296 24 233 231 48 19 chr21 18403061 18403165 -26504405 + (TTATA)n Simple_repeat Simple_repeat 3 109 0 2316 129 11 24 chr21 18403317 18403697 -26503873 + THE1C LTR MaLR 1 375 0 2168 92 3 10 chr21 18404456 18404748 -26502822 + AluSq SINE Alu 13 302 -11 343 277 131 24 chr21 18407281 18407487 -26500083 - MIR SINE MIR -10 252 25 1873 110 0 0 chr21 18407569 18407833 -26499737 + AluSc SINE Alu 43 306 -3 1141 253 67 36 chr21 18407877 18408323 -26499247 - L1ME1 LINE L1 -4 6162 5703 453 205 0 0 chr21 18408409 18408521 -26499049 + (TA)n Simple_repeat Simple_repeat 1 112 0 321 158 18 0 chr21 18408524 18408581 -26498989 - L1MCa LINE L1 -4363 2063 2006 991 262 15 32 chr21 18408586 18409196 -26498374 - L1ME1 LINE L1 -531 5590 4995 1789 167 7 3 chr21 18409258 18409558 -26498012 - AluJo SINE Alu -11 301 1 653 238 106 87 chr21 18409575 18409968 -26497602 + MLT2C1 LTR ERVL 1 413 -1 449 238 18 114 chr21 18409971 18410077 -26497493 - L1ME1 LINE L1 -1230 4916 4842 2292 59 3 0 chr21 18410077 18410363 -26497207 - AluY SINE Alu -24 287 1 449 238 18 114 chr21 18410363 18410483 -26497087 - L1ME1 LINE L1 -1304 4842 4712 325 286 223 0 chr21 18410828 18411034 -26496536 + L1MEc LINE L1 1642 1893 -4503 542 284 33 16 chr21 18411595 18411778 -26495792 - MER5A DNA MER1_type 0 189 4 904 203 173 5 chr21 18411860 18412062 -26495508 + MER8 DNA MER2_type 2 237 -2 2183 166 11 82 chr21 18412089 18412612 -26494958 - MER101B LTR ERV1 0 570 85 23 0 0 0 chr21 18413245 18413268 -26494302 + AT_rich Low_complexity Low_complexity 1 23 0 2156 113 3 0 chr21 18413620 18413922 -26493648 - AluSx SINE Alu -9 303 1 186 43 0 0 chr21 18414040 18414063 -26493507 + (TTTTA)n Simple_repeat Simple_repeat 3 25 0 23 0 0 0 chr21 18414357 18414380 -26493190 + AT_rich Low_complexity Low_complexity 1 23 0 25 0 0 0 chr21 18414483 18414508 -26493062 + AT_rich Low_complexity Low_complexity 1 25 0 2371 156 32 28 chr21 18415722 18416153 -26491417 - Tigger2a DNA MER2_type -1 433 1 209 374 80 59 chr21 18416681 18417130 -26490440 + L2 LINE L2 2028 2466 -848 2207 102 3 0 chr21 18417130 18417424 -26490146 - AluSx SINE Alu -17 295 1 209 374 80 59 chr21 18417424 18417905 -26489665 + L2 LINE L2 2466 2977 -337 654 224 33 6 chr21 18418045 18418228 -26489342 + MER53 DNA DNA 2 189 0 2645 20 0 0 chr21 18418331 18418629 -26488941 + AluY SINE Alu 1 298 -13 1978 251 90 40 chr21 18419035 18419998 -26487572 - L1ME1 LINE L1 -5 6161 5153 2535 105 36 10 chr21 18420475 18420865 -26486705 + MLT2A1 LTR ERVL 1 400 -44 201 117 50 0 chr21 18420872 18420932 -26486638 + (TA)n Simple_repeat Simple_repeat 1 63 0 331 125 0 0 chr21 18420949 18420997 -26486573 + MLT2A1 LTR ERVL 473 520 0 17530 82 3 1 chr21 18420997 18423283 -26484287 + HERVL-A1 LTR ERVL 1 2290 -3364 388 219 27 96 chr21 18423293 18423617 -26483953 + LTR1 LTR ERV1 109 554 -466 342 294 20 39 chr21 18423611 18423764 -26483806 + LTR28 LTR ERV1 864 1013 -7 * 216 0 0 0 chr21 18424354 18424378 -26483192 + (A)n Simple_repeat Simple_repeat 1 24 0 312 356 78 15 chr21 18424617 18424822 -26482748 - MIR SINE MIR -44 218 1 22 35 0 0 chr21 18425277 18425306 -26482264 + AT_rich Low_complexity Low_complexity 1 29 0 218 176 20 0 chr21 18425324 18425375 -26482195 + (TA)n Simple_repeat Simple_repeat 1 52 0 22 56 0 0 chr21 18426045 18426081 -26481489 + AT_rich Low_complexity Low_complexity 1 36 0 625 335 105 34 chr21 18426524 18427005 -26480565 - L2 LINE L2 -276 3037 2523 1187 320 93 51 chr21 18427108 18428195 -26479375 - L2 LINE L2 0 3313 2161 275 235 0 0 chr21 18428196 18428247 -26479323 - L2 LINE L2 -2068 1246 1196 306 73 0 0 chr21 18428362 18428403 -26479167 + (T)n Simple_repeat Simple_repeat 1 41 0 530 191 25 96 chr21 18428814 18428971 -26478599 + MER49 LTR ERV1 5 150 -773 396 278 20 24 chr21 18428938 18429103 -26478467 + MER49 LTR ERV1 471 623 -99 * 380 139 38 63 chr21 18429079 18429158 -26478412 + MER72 LTR ERV1 646 722 0 * 216 122 0 0 chr21 18429245 18429286 -26478284 + (TG)n Simple_repeat Simple_repeat 2 42 0 1424 134 0 27 chr21 18429790 18430014 -26477556 - MER1B DNA MER1_type -2 337 120 290 26 26 0 chr21 18430014 18430022 -26477548 + (TG)n Simple_repeat Simple_repeat 1 48 0 290 26 26 0 chr21 18430022 18430061 -26477509 + (TG)n Simple_repeat Simple_repeat 2 41 0 341 173 0 13 chr21 18430143 18430218 -26477352 + (TA)n Simple_repeat Simple_repeat 1 74 0 16183 170 47 11 chr21 18430218 18436488 -26471082 - L1P5 LINE L1 -360 6507 3 405 229 70 38 chr21 18436563 18436720 -26470850 + L1ME3 LINE L1 6000 6161 -1 459 330 44 35 chr21 18436845 18437048 -26470522 + MIR SINE MIR 47 251 -11 21 57 0 0 chr21 18437172 18437207 -26470363 + AT_rich Low_complexity Low_complexity 1 35 0 27 29 0 0 chr21 18437539 18437573 -26469997 + AT_rich Low_complexity Low_complexity 1 34 0 2227 97 7 0 chr21 18437590 18437889 -26469681 - AluSg SINE Alu -9 301 1 552 214 8 0 chr21 18437897 18438014 -26469556 + L1PA16 LINE L1 6048 6165 -1 1843 205 32 3 chr21 18439019 18439366 -26468204 - MLT1A1 LTR MaLR 0 365 9 565 316 87 0 chr21 18439485 18439716 -26467854 - MLT1I LTR MaLR 0 409 159 206 363 49 20 chr21 18439852 18439954 -26467616 - MIR3 SINE MIR -36 172 68 211 398 44 0 chr21 18440799 18440912 -26466658 + MIR3 SINE MIR 43 160 -48 967 365 58 28 chr21 18441464 18442252 -26465318 - HERVL LTR ERVL -2257 3397 2622 2353 54 10 3 chr21 18442252 18442548 -26465022 + AluY SINE Alu 1 298 -13 967 365 58 28 chr21 18442548 18442636 -26464934 - HERVL LTR ERVL -3032 2622 2538 1972 85 27 0 chr21 18444822 18445080 -26462490 + AluY SINE Alu 33 297 -14 366 23 0 0 chr21 18445696 18445739 -26461831 + (TG)n Simple_repeat Simple_repeat 2 44 0 2402 77 1 0 chr21 18445882 18446782 -26460788 - L1P LINE L1 -2515 3631 2551 4216 62 4 0 chr21 18446782 18447349 -26460221 + L1PA6 LINE L1 5605 6173 0 24 32 0 0 chr21 18447406 18447437 -26460133 + AT_rich Low_complexity Low_complexity 1 31 0 977 138 33 6 chr21 18447470 18447651 -26459919 + L1MA4 LINE L1 6109 6294 -6 23 0 0 0 chr21 18447693 18447716 -26459854 + AT_rich Low_complexity Low_complexity 1 23 0 1072 162 128 0 chr21 18447717 18447921 -26459649 - MER30 DNA MER1_type 0 230 1 21 36 0 0 chr21 18447960 18447988 -26459582 + AT_rich Low_complexity Low_complexity 1 28 0 1061 143 7 0 chr21 18448341 18448519 -26459051 - AluSg/x SINE Alu 0 310 132 2388 74 0 16 chr21 18448520 18448832 -26458738 - AluY SINE Alu -4 307 1 1553 156 3 88 chr21 18450436 18450756 -26456814 - MER4A LTR ERV1 0 664 372 599 139 0 30 chr21 18450808 18450909 -26456661 - MER4A LTR ERV1 -566 98 1 2567 83 53 6 chr21 18451340 18451700 -26455870 + MER51B LTR ERV1 1 377 0 267 312 40 87 chr21 18451996 18452071 -26455499 + L2 LINE L2 271 348 -2966 1887 123 3 40 chr21 18452071 18452371 -26455199 - AluY SINE Alu -22 289 1 267 312 40 87 chr21 18452371 18452468 -26455102 + L2 LINE L2 348 435 -2879 21 0 0 0 chr21 18452602 18452623 -26454947 + AT_rich Low_complexity Low_complexity 1 21 0 234 341 165 21 chr21 18452847 18453181 -26454389 + L2 LINE L2 1689 2070 -1244 296 47 0 23 chr21 18453269 18453312 -26454258 + (CA)n Simple_repeat Simple_repeat 1 42 0 207 311 66 49 chr21 18453331 18453453 -26454117 + L2 LINE L2 2222 2345 -969 613 81 0 0 chr21 18453455 18453541 -26454029 + MSTB1 LTR MaLR 1 86 -346 23 68 0 0 chr21 18454521 18454565 -26453005 + AT_rich Low_complexity Low_complexity 1 44 0 23 68 0 0 chr21 18454783 18454827 -26452743 + AT_rich Low_complexity Low_complexity 1 44 0 295 215 25 51 chr21 18455005 18455084 -26452486 - MER3 DNA MER1_type -132 77 1 23 0 0 0 chr21 18455140 18455163 -26452407 + AT_rich Low_complexity Low_complexity 1 23 0 23 78 0 0 chr21 18455635 18455686 -26451884 + AT_rich Low_complexity Low_complexity 1 51 0 570 222 48 113 chr21 18455744 18456186 -26451384 - MER57A LTR ERV1 0 403 6 246 196 20 0 chr21 18456467 18456518 -26451052 + L2 LINE L2 3261 3312 -1 205 277 60 24 chr21 18456895 18456978 -26450592 + MIR SINE MIR 75 160 -102 23 0 0 0 chr21 18457305 18457328 -26450242 + AT_rich Low_complexity Low_complexity 1 23 0 23 0 0 0 chr21 18458280 18458303 -26449267 + AT_rich Low_complexity Low_complexity 1 23 0 21 36 0 0 chr21 18458879 18458907 -26448663 + AT_rich Low_complexity Low_complexity 1 28 0 30 45 0 0 chr21 18459100 18459144 -26448426 + AT_rich Low_complexity Low_complexity 1 44 0 27 62 0 0 chr21 18459194 18459242 -26448328 + AT_rich Low_complexity Low_complexity 1 48 0 430 229 31 0 chr21 18459256 18459352 -26448218 - AluJo SINE Alu -26 286 188 802 178 0 15 chr21 18459370 18459505 -26448065 - AluJo SINE Alu -169 133 1 330 115 0 0 chr21 18459536 18459588 -26447982 + (TTCC)n Simple_repeat Simple_repeat 1 52 0 2029 135 10 3 chr21 18459588 18459891 -26447679 - AluSx SINE Alu -7 305 1 34 0 0 0 chr21 18460277 18460311 -26447259 + AT_rich Low_complexity Low_complexity 1 34 0 29 28 0 0 chr21 18460359 18460395 -26447175 + AT_rich Low_complexity Low_complexity 1 36 0 349 24 0 0 chr21 18461056 18461097 -26446473 + (TTA)n Simple_repeat Simple_repeat 2 180 0 1760 73 0 9 chr21 18461097 18461330 -26446240 - AluSx SINE Alu -1 322 52 444 240 110 7 chr21 18462186 18462340 -26445230 + HAL1 LINE L1 1550 1719 -788 324 263 57 43 chr21 18462659 18462868 -26444702 + HAL1 LINE L1 2296 2507 0 318 308 148 35 chr21 18463035 18463204 -26444366 - HAL1b LINE L1 -761 587 400 43 20 0 0 chr21 18463643 18463693 -26443877 + AT_rich Low_complexity Low_complexity 1 50 0 1944 95 7 28 chr21 18465243 18465564 -26442006 + AluSc SINE Alu 2 316 0 181 298 96 0 chr21 18465897 18466001 -26441569 - MER5C DNA MER1_type -175 149 36 2014 163 27 57 chr21 18466485 18466926 -26440644 + MSTC LTR MaLR 1 428 0 28 29 0 0 chr21 18467027 18467062 -26440508 + AT_rich Low_complexity Low_complexity 1 35 0 1806 161 96 27 chr21 18467233 18467638 -26439932 - Tigger2a DNA MER2_type 0 434 2 2123 80 40 0 chr21 18467895 18468171 -26439399 + AluY SINE Alu 1 287 -24 294 73 0 0 chr21 18468171 18468212 -26439358 + (TA)n Simple_repeat Simple_repeat 1 41 0 185 206 0 0 chr21 18468393 18468427 -26439143 - L2 LINE L2 -309 2963 2930 21 0 0 0 chr21 18468629 18468650 -26438920 + AT_rich Low_complexity Low_complexity 1 21 0 27 0 0 0 chr21 18468917 18468944 -26438626 + AT_rich Low_complexity Low_complexity 1 27 0 365 297 248 0 chr21 18469185 18469330 -26438240 + MER5A DNA MER1_type 9 189 0 1677 306 59 38 chr21 18469386 18470367 -26437203 + L1PBa LINE L1 -656 345 -5859 962 258 14 21 chr21 18470383 18470960 -26436610 + L1PBa LINE L1 1 994 -5210 1587 174 177 11 chr21 18470960 18471327 -26436243 - MSTA LTR MaLR 0 428 1 8014 136 16 118 chr21 18471327 18473084 -26434486 - MSTA-int LTR MaLR 0 1580 3 4209 190 41 14 chr21 18473325 18474451 -26433119 + L1PB3 LINE L1 215 1309 -4894 2129 153 16 11 chr21 18474451 18474824 -26432746 + THE1C LTR MaLR 1 375 0 4209 190 41 14 chr21 18474824 18475014 -26432556 + L1PB3 LINE L1 1309 3355 -2848 503 147 0 86 chr21 18475020 18475136 -26432434 + MER50 LTR ERV1 499 604 -130 8386 190 8 37 chr21 18475140 18476002 -26431568 + L1PB3 LINE L1 3346 4232 -1979 7176 49 1 0 chr21 18476002 18477432 -26430138 - L1PA5 LINE L1 0 6154 4724 8386 190 8 37 chr21 18477432 18479526 -26428044 + L1PB3 LINE L1 4232 6204 -7 24 0 0 0 chr21 18479529 18479553 -26428017 + AT_rich Low_complexity Low_complexity 1 24 0 714 229 86 6 chr21 18479719 18479894 -26427676 + MER5A DNA MER1_type 1 189 0 315 146 0 0 chr21 18480369 18480424 -26427146 + (TA)n Simple_repeat Simple_repeat 2 56 0 2414 97 0 0 chr21 18480567 18480876 -26426694 + AluSx SINE Alu 1 309 -3 2173 47 32 0 chr21 18480933 18481212 -26426358 + L1PA3 LINE L1 5868 6155 0 23 0 0 0 chr21 18482168 18482191 -26425379 + AT_rich Low_complexity Low_complexity 1 23 0 258 56 0 0 chr21 18483823 18483859 -26423711 + (GA)n Simple_repeat Simple_repeat 1 36 0 23 0 0 0 chr21 18484062 18484085 -26423485 + AT_rich Low_complexity Low_complexity 1 23 0 222 105 0 0 chr21 18484764 18484802 -26422768 + (A)n Simple_repeat Simple_repeat 1 38 0 28 61 0 0 chr21 18484943 18484992 -26422578 + AT_rich Low_complexity Low_complexity 1 49 0 253 333 79 44 chr21 18485404 18485632 -26421938 - L2 LINE L2 -418 2896 2661 1373 228 77 112 chr21 18485636 18485920 -26421650 + MLT1E1 LTR MaLR 2 295 -359 1854 193 62 31 chr21 18485920 18486339 -26421231 - MSTB1 LTR MaLR 0 432 1 1373 228 77 112 chr21 18486339 18486731 -26420839 + MLT1E1 LTR MaLR 295 654 0 238 319 0 21 chr21 18487480 18487574 -26419996 + MIR SINE MIR 78 169 -93 371 214 91 10 chr21 18487875 18488058 -26419512 + MLT1E3 LTR MaLR 62 239 -385 857 201 22 112 chr21 18488109 18488329 -26419241 + MLT1E3 LTR MaLR 380 573 -51 1908 234 74 10 chr21 18488329 18488371 -26419199 - MLT2B2 LTR ERVL 0 515 477 246 81 0 0 chr21 18488371 18488408 -26419162 + (CA)n Simple_repeat Simple_repeat 2 38 0 1908 234 74 10 chr21 18488408 18488849 -26418721 - MLT2B2 LTR ERVL -38 477 1 857 201 22 112 chr21 18488849 18488897 -26418673 + MLT1E3 LTR MaLR 573 624 0 198 360 22 7 chr21 18488905 18489044 -26418526 + L2 LINE L2 2238 2378 -936 189 420 130 0 chr21 18489531 18489662 -26417908 + L2 LINE L2 3123 3270 -2 429 276 31 0 chr21 18490362 18490489 -26417081 + L1MD1 LINE L1 6060 6190 -52 4736 184 24 8 chr21 18490494 18491729 -26415841 - L1PB4 LINE L1 -8 6148 4892 867 284 141 72 chr21 18491777 18491976 -26415594 + L2 LINE L2 1764 1948 -1366 2222 94 0 13 chr21 18491976 18492274 -26415296 - AluSc SINE Alu -13 296 3 867 284 141 72 chr21 18492274 18492777 -26414793 + L2 LINE L2 1948 2514 -800 322 284 21 21 chr21 18493842 18493937 -26413633 + L2 LINE L2 2530 2624 -690 2107 102 0 24 chr21 18494049 18494344 -26413226 + AluSc SINE Alu 1 288 -21 1830 132 14 7 chr21 18494449 18494744 -26412826 + AluSg SINE Alu 2 298 -12 199 328 153 0 chr21 18494997 18495128 -26412442 + L2 LINE L2 3159 3309 -4 28 29 0 0 chr21 18495141 18495176 -26412394 + AT_rich Low_complexity Low_complexity 1 35 0 319 207 109 35 chr21 18495866 18496040 -26411530 + HAL1 LINE L1 950 1136 -1371 343 290 30 59 chr21 18496217 18496386 -26411184 + HAL1 LINE L1 1399 1562 -945 352 249 96 74 chr21 18496476 18496829 -26410741 + HAL1 LINE L1 1988 2348 -159 337 316 137 13 chr21 18497664 18497898 -26409672 + MLT1H LTR MaLR 29 291 -258 664 246 9 62 chr21 18497962 18498248 -26409322 - MLT-int LTR MaLR -777 874 611 2380 46 7 10 chr21 18498248 18498552 -26409018 - AluY SINE Alu -8 303 1 203 211 39 31 chr21 18499436 18499564 -26408006 + CT-rich Low_complexity Low_complexity 4 132 0 1649 264 29 3 chr21 18500526 18500905 -26406665 + MER70A LTR ERVL 1 389 -83 267 181 208 14 chr21 18500892 18500964 -26406606 - MLT1A1 LTR MaLR -279 86 1 * 425 200 8 58 chr21 18501046 18501166 -26406404 - MLT1C LTR MaLR -353 114 1 22 56 0 0 chr21 18501167 18501203 -26406367 + AT_rich Low_complexity Low_complexity 1 36 0 195 241 69 17 chr21 18501286 18501344 -26406226 - MIR3 SINE MIR -28 180 120 763 41 0 0 chr21 18501507 18501605 -26405965 - L1PA4 LINE L1 0 6155 6058 209 243 14 14 chr21 18502625 18502695 -26404875 + (TCTA)n Simple_repeat Simple_repeat 3 72 0 932 270 139 22 chr21 18502791 18503203 -26404367 - MLT1D LTR MaLR -39 466 1 307 252 36 27 chr21 18503208 18503319 -26404251 - L1MC4 LINE L1 -173 7869 7758 382 202 12 0 chr21 18503333 18503413 -26404157 - MER96B DNA MER1_type? -192 225 145 1493 194 47 26 chr21 18503413 18503753 -26403817 - MLT1A1 LTR MaLR 0 365 19 535 224 97 0 chr21 18503766 18503900 -26403670 - MER96B DNA MER1_type? -270 147 1 1570 265 110 35 chr21 18503900 18504783 -26402787 - L1MC4 LINE L1 -300 7742 6794 403 287 76 12 chr21 18504780 18505140 -26402430 - L1MDb LINE L1 -4853 1972 1438 * 348 301 31 49 chr21 18505151 18505314 -26402256 - L1MDb LINE L1 -5031 1616 1457 248 200 78 78 chr21 18505335 18505425 -26402145 - L1MDb LINE L1 -5437 1109 1020 342 362 60 37 chr21 18505667 18505965 -26401605 - L1MDb LINE L1 -5760 874 570 307 369 28 11 chr21 18506461 18506640 -26400930 - MIR SINE MIR -30 232 51 2272 50 3 7 chr21 18506923 18507220 -26400350 + AluY SINE Alu 1 296 -15 249 116 43 0 chr21 18507222 18507291 -26400279 + (TA)n Simple_repeat Simple_repeat 2 73 0 286 328 169 5 chr21 18507385 18507627 -26399943 - L2 LINE L2 -281 3032 2753 726 291 82 73 chr21 18509450 18509941 -26397629 + Charlie2 DNA MER1_type 95 589 -2193 410 310 130 49 chr21 18510150 18510495 -26397075 + L2 LINE L2 2511 2883 -431 192 340 29 29 chr21 18511732 18511835 -26395735 + MIR SINE MIR 126 228 -34 258 311 0 0 chr21 18511927 18512001 -26395569 + L2 LINE L2 3235 3308 -5 24 67 0 0 chr21 18512600 18512645 -26394925 + AT_rich Low_complexity Low_complexity 1 45 0 28 61 0 0 chr21 18512713 18512762 -26394808 + AT_rich Low_complexity Low_complexity 1 49 0 902 261 59 63 chr21 18514849 18514876 -26392694 + L1MD1 LINE L1 19 45 -6378 2424 232 4 22 chr21 18514876 18515427 -26392143 - MER87 LTR ERV1 0 541 1 902 261 59 63 chr21 18515427 18515858 -26391712 + L1MD1 LINE L1 45 475 -5948 381 22 0 0 chr21 18516262 18516308 -26391262 + (CA)n Simple_repeat Simple_repeat 2 47 0 777 235 92 89 chr21 18516308 18516523 -26391047 + L1MD1 LINE L1 4482 4695 -2246 1892 144 14 0 chr21 18516523 18516807 -26390763 + AluSx SINE Alu 1 288 -24 777 235 92 89 chr21 18516807 18517145 -26390425 + L1MD1 LINE L1 4695 5040 -1901 2400 194 95 28 chr21 18517159 18517772 -26389798 + L1MD1 LINE L1 6366 7019 -18 7902 17 0 0 chr21 18517922 18519388 -26388182 - L1HS LINE L1 -2 6153 4688 4741 20 0 0 chr21 18519382 18519941 -26387629 + L1P LINE L1 4177 4735 -1411 * 25 0 0 0 chr21 18520160 18520185 -26387385 + AT_rich Low_complexity Low_complexity 1 25 0 2174 113 27 0 chr21 18520545 18520880 -26386690 - L1PA15 LINE L1 -196 5969 5626 1281 112 5 0 chr21 18520880 18521066 -26386504 + L1PA15 LINE L1 5973 6160 -5 344 22 22 0 chr21 18521714 18521759 -26385811 + (TAAA)n Simple_repeat Simple_repeat 3 48 0 420 169 14 0 chr21 18521774 18521845 -26385725 - L1PA8 LINE L1 -200 5972 5901 769 285 55 29 chr21 18522261 18522535 -26385035 + MLT1I LTR MaLR 117 397 -12 24 0 0 0 chr21 18522660 18522684 -26384886 + AT_rich Low_complexity Low_complexity 1 24 0 555 308 67 24 chr21 18523095 18523348 -26384222 + L1MCb LINE L1 1 264 -5781 3757 74 328 0 chr21 18523351 18523973 -26383597 + LTR12 LTR ERV1 1 826 0 1442 273 50 11 chr21 18523973 18524516 -26383054 + L1MCb LINE L1 960 1523 -5041 1751 154 197 7 chr21 18524768 18525184 -26382386 + LTR54B LTR ERV1 3 497 -1 219 349 0 0 chr21 18527412 18527478 -26380092 + L2 LINE L2 343 408 -2906 21 0 0 0 chr21 18528045 18528066 -26379504 + AT_rich Low_complexity Low_complexity 1 21 0 237 33 0 0 chr21 18528515 18528545 -26379025 + (CAAA)n Simple_repeat Simple_repeat 1 30 0 2056 115 0 3 chr21 18528683 18528978 -26378592 - AluSg SINE Alu -16 294 1 203 79 26 0 chr21 18530404 18530442 -26377128 + (TTTTA)n Simple_repeat Simple_repeat 3 41 0 41 72 0 0 chr21 18530866 18530949 -26376621 + AT_rich Low_complexity Low_complexity 1 83 0 28 29 0 0 chr21 18531102 18531137 -26376433 + AT_rich Low_complexity Low_complexity 1 35 0 850 233 72 40 chr21 18531382 18531730 -26375840 - LTR25 LTR ERV1 -21 773 415 261 180 180 0 chr21 18531701 18531762 -26375808 - MER51A LTR ERV1 -354 280 209 * 234 254 0 15 chr21 18531755 18531822 -26375748 - LTR27 LTR ERV1 -418 218 153 * 394 175 62 0 chr21 18531955 18532035 -26375535 - MER61E LTR ERV1 -484 85 1 331 331 65 56 chr21 18532211 18532251 -26375319 - MLT1J LTR MaLR -48 463 425 575 97 0 11 chr21 18532251 18532344 -26375226 + (TA)n Simple_repeat Simple_repeat 2 93 0 331 331 65 56 chr21 18532344 18532626 -26374944 - MLT1J LTR MaLR -86 425 138 272 179 0 24 chr21 18532632 18532716 -26374854 + (TATAA)n Simple_repeat Simple_repeat 4 85 0 23 0 0 0 chr21 18532792 18532815 -26374755 + AT_rich Low_complexity Low_complexity 1 23 0 1042 160 17 0 chr21 18532846 18533021 -26374549 + MER82 DNA MER2_type 54 231 -422 279 54 0 0 chr21 18533421 18533458 -26374112 + (CA)n Simple_repeat Simple_repeat 2 38 0 21 0 0 0 chr21 18533507 18533528 -26374042 + AT_rich Low_complexity Low_complexity 1 21 0 233 125 0 0 chr21 18533831 18533863 -26373707 - MER70A LTR ERVL 0 472 441 * 2059 234 55 4 chr21 18533861 18534314 -26373256 - MER70B LTR ERVL -102 476 1 29 28 0 0 chr21 18535125 18535161 -26372409 + AT_rich Low_complexity Low_complexity 1 36 0 238 165 63 0 chr21 18535286 18535365 -26372205 + GA-rich Low_complexity Low_complexity 2 85 0 446 123 0 14 chr21 18535732 18535805 -26371765 - L1PA14 LINE L1 -28 6133 6062 1317 147 4 4 chr21 18535805 18536056 -26371514 + L1P LINE L1 5128 5378 -768 3845 218 77 63 chr21 18536595 18537651 -26369919 + MLT1A1-int LTR MaLR 666 1735 0 948 251 97 29 chr21 18537651 18537993 -26369577 + MLT1A1 LTR MaLR 1 365 0 231 352 140 34 chr21 18538619 18539363 -26368207 + L2 LINE L2 602 1424 -1890 2263 81 3 0 chr21 18540323 18540618 -26366952 - AluSp SINE Alu -17 296 1 2232 97 10 3 chr21 18541295 18541603 -26365967 - AluSx SINE Alu -2 310 1 262 161 71 0 chr21 18541751 18541807 -26365763 + MLT1J1 LTR MaLR 385 444 -2 24 91 0 0 chr21 18542128 18542194 -26365376 + AT_rich Low_complexity Low_complexity 1 66 0 192 152 0 0 chr21 18543333 18543366 -26364204 + (TATATG)n Simple_repeat Simple_repeat 2 34 0 33 43 0 0 chr21 18543583 18543630 -26363940 + AT_rich Low_complexity Low_complexity 1 47 0 2183 94 0 0 chr21 18544542 18544961 -26362609 + AluSq SINE Alu 2 420 0 257 267 78 43 chr21 18545035 18545151 -26362419 + LTR33 LTR ERVL 41 160 -361 237 260 68 89 chr21 18545860 18546006 -26361564 - MIR SINE MIR -16 246 104 249 108 0 0 chr21 18546620 18546657 -26360913 + (CA)n Simple_repeat Simple_repeat 2 38 0 280 254 0 28 chr21 18547257 18547328 -26360242 - MER45 DNA AcHobo -33 1548 1480 522 0 0 0 chr21 18547962 18548020 -26359550 + (TTTTC)n Simple_repeat Simple_repeat 2 59 0 408 20 0 0 chr21 18548911 18548960 -26358610 + (CA)n Simple_repeat Simple_repeat 2 50 0 191 299 39 39 chr21 18549423 18549500 -26358070 + L2 LINE L2 3190 3266 -47 1055 157 47 51 chr21 18549654 18549890 -26357680 - AluJo SINE Alu -24 288 54 23 0 0 0 chr21 18550037 18550060 -26357510 + AT_rich Low_complexity Low_complexity 1 23 0 10106 186 29 17 chr21 18550071 18553372 -26354198 - L1MA5 LINE L1 -2 7360 4025 13402 122 9 2 chr21 18553386 18556217 -26351353 - L1PA8A LINE L1 0 6131 3273 3072 166 5 7 chr21 18556218 18556791 -26350779 + L1PA8A LINE L1 2681 3252 -2894 1277 224 40 95 chr21 18556785 18557259 -26350311 - L1MA5 LINE L1 -3172 4036 3589 * 1788 148 22 0 chr21 18557271 18557542 -26350028 - AluSx SINE Alu -13 299 23 6153 228 52 55 chr21 18557542 18557712 -26349858 - L1MA5 LINE L1 -3798 3410 3241 1824 149 7 0 chr21 18557712 18558014 -26349556 + AluSx SINE Alu 4 307 0 6153 228 52 55 chr21 18558014 18558999 -26348571 - L1MA5 LINE L1 -3967 3241 2255 2256 176 26 9 chr21 18558999 18559420 -26348150 - MSTA LTR MaLR 0 428 1 6153 228 52 55 chr21 18559420 18560794 -26346776 - L1MA5 LINE L1 -4953 2255 1 818 291 68 16 chr21 18561058 18561381 -26346189 + MER93a LTR ERV1 61 400 -2 328 313 71 75 chr21 18561493 18562030 -26345540 - L1M4 LINE L1 -1331 4815 4281 22 80 0 0 chr21 18562297 18562347 -26345223 + AT_rich Low_complexity Low_complexity 1 50 0 2154 68 20 10 chr21 18562518 18562812 -26344758 - AluY SINE Alu -14 297 1 23 0 0 0 chr21 18563513 18563536 -26344034 + AT_rich Low_complexity Low_complexity 1 23 0 21 0 0 0 chr21 18563597 18563618 -26343952 + AT_rich Low_complexity Low_complexity 1 21 0 589 222 45 17 chr21 18565889 18566065 -26341505 + MER53 DNA DNA 9 189 0 694 204 0 8 chr21 18567077 18567209 -26340361 + FLAM_C SINE Alu 1 131 -12 31 26 0 0 chr21 18567210 18567248 -26340322 + AT_rich Low_complexity Low_complexity 1 38 0 1663 185 11 0 chr21 18567737 18568023 -26339547 - AluJb SINE Alu -17 295 7 444 182 21 118 chr21 18568264 18568451 -26339119 - MER112 DNA MER1_type -84 176 8 647 281 6 6 chr21 18568557 18568724 -26338846 - MIR SINE MIR -44 218 52 27 29 0 0 chr21 18569172 18569206 -26338364 + AT_rich Low_complexity Low_complexity 1 34 0 2091 111 0 29 chr21 18569260 18569566 -26338004 - AluSq SINE Alu -16 297 1 200 326 11 86 chr21 18569837 18570012 -26337558 - MIR SINE MIR -91 171 10 3648 188 116 33 chr21 18571726 18572581 -26334989 - MER21A LTR ERV1 0 931 6 2410 75 13 0 chr21 18572627 18572964 -26334606 + AluSp SINE Alu 2 342 0 609 282 106 46 chr21 18573703 18574461 -26333109 + L1M4 LINE L1 2299 3101 -3045 408 20 0 0 chr21 18574484 18574533 -26333037 + (CA)n Simple_repeat Simple_repeat 2 50 0 643 322 134 44 chr21 18574845 18575501 -26332069 + L1M4 LINE L1 3543 4272 -1874 1343 171 66 58 chr21 18575743 18576105 -26331465 - MLT1A1 LTR MaLR 0 365 1 3947 170 80 17 chr21 18576603 18577349 -26330221 + MER54B LTR ERVL 1 793 0 29 0 0 0 chr21 18579292 18579321 -26328249 + AT_rich Low_complexity Low_complexity 1 29 0 261 267 11 22 chr21 18579646 18579736 -26327834 + (TATATG)n Simple_repeat Simple_repeat 5 93 0 2287 160 13 61 chr21 18580032 18580488 -26327082 - Tigger2 DNA MER2_type 0 2718 1 2054 91 14 11 chr21 18580782 18581103 -26326467 + AluSq SINE Alu 7 328 0 2002 110 3 27 chr21 18581402 18581701 -26325869 + AluSg SINE Alu 1 292 -18 21 36 0 0 chr21 18582025 18582053 -26325517 + AT_rich Low_complexity Low_complexity 1 28 0 303 189 81 0 chr21 18582115 18582189 -26325381 - MER116 DNA Mariner 0 80 1 653 124 0 9 chr21 18582353 18582458 -26325112 + AluSg/x SINE Alu 197 300 -10 23 0 0 0 chr21 18582514 18582537 -26325033 + AT_rich Low_complexity Low_complexity 1 23 0 2283 95 3 0 chr21 18582950 18583256 -26324314 - AluSp SINE Alu -5 308 2 27 49 0 0 chr21 18583982 18584023 -26323547 + AT_rich Low_complexity Low_complexity 1 41 0 811 257 96 32 chr21 18586352 18586729 -26320841 - MER110A LTR ERV1 -24 444 44 1832 191 2 72 chr21 18586729 18587143 -26320427 + MLT1B LTR MaLR 1 385 -5 26 30 0 0 chr21 18587320 18587353 -26320217 + AT_rich Low_complexity Low_complexity 1 33 0 2001 125 0 0 chr21 18587639 18587961 -26319609 - AluSg1 SINE Alu 0 326 5 1690 214 6 26 chr21 18587966 18588316 -26319254 - MLT1A1 LTR MaLR -13 352 10 289 301 77 56 chr21 18588327 18588470 -26319100 + MER5B DNA MER1_type 6 151 -27 1330 231 93 8 chr21 18588717 18589117 -26318453 - LTR2 LTR ERV1 0 490 1 3766 51 45 0 chr21 18589317 18589786 -26317784 + LTR2B LTR ERV1 1 490 0 23 33 0 0 chr21 18590130 18590160 -26317410 + AT_rich Low_complexity Low_complexity 1 30 0 1161 297 114 29 chr21 18590953 18591701 -26315869 + L1M4 LINE L1 2 812 -5730 1893 195 64 36 chr21 18591855 18592049 -26315521 + L1MB5 LINE L1 5282 5469 -705 3059 98 12 58 chr21 18592049 18592229 -26315341 - L1PA13 LINE L1 -8 6155 5968 1457 191 122 22 chr21 18592229 18592638 -26314932 + LTR7 LTR ERV1 1 450 0 3059 98 12 58 chr21 18592638 18592957 -26314613 - L1PA13 LINE L1 -195 5968 5679 636 38 0 0 chr21 18592958 18593037 -26314533 + (GGAA)n Simple_repeat Simple_repeat 1 79 0 1893 195 64 36 chr21 18593037 18593338 -26314232 + L1MB5 LINE L1 5469 5797 -377 294 29 0 0 chr21 18593338 18593373 -26314197 + (CA)n Simple_repeat Simple_repeat 2 36 0 1893 195 64 36 chr21 18593373 18593407 -26314163 + L1MB5 LINE L1 5797 5829 -345 1213 231 43 67 chr21 18593409 18593428 -26314142 + MLT1A1 LTR MaLR 2 20 -345 2176 170 59 2 chr21 18593428 18593833 -26313737 - MSTC LTR MaLR 0 428 1 1213 231 43 67 chr21 18593833 18594186 -26313384 + MLT1A1 LTR MaLR 20 365 0 1460 182 34 62 chr21 18594186 18594538 -26313032 + L1MB5 LINE L1 5826 6167 -7 666 207 148 0 chr21 18594835 18595004 -26312566 + MER34C LTR ERV1 45 238 -347 629 146 29 0 chr21 18595006 18595109 -26312461 + MER4E LTR ERV1 661 766 0 21 0 0 0 chr21 18595896 18595917 -26311653 + AT_rich Low_complexity Low_complexity 1 21 0 2202 244 96 45 chr21 18597345 18598123 -26309447 - MER21B LTR ERV1 -27 836 19 355 264 0 0 chr21 18598145 18598217 -26309353 - MER21B LTR ERV1 -773 90 19 496 203 119 81 chr21 18598315 18598551 -26309019 + MER34 LTR ERV1 373 542 0 934 264 11 39 chr21 18598571 18598738 -26308832 - MER93a LTR ERV1 0 402 245 2363 143 3 3 chr21 18598738 18599101 -26308469 + THE1B LTR MaLR 2 364 0 934 264 11 39 chr21 18599101 18599217 -26308353 - MER93a LTR ERV1 -157 245 127 279 150 0 0 chr21 18599323 18599383 -26308187 + (TA)n Simple_repeat Simple_repeat 1 60 0 25 51 0 0 chr21 18600143 18600182 -26307388 + AT_rich Low_complexity Low_complexity 1 39 0 2380 77 0 3 chr21 18600382 18600682 -26306888 - AluY SINE Alu -12 299 1 225 305 57 34 chr21 18600846 18601023 -26306547 + L1M4 LINE L1 3921 4101 -2045 195 222 0 0 chr21 18601681 18601726 -26305844 + (TATATG)n Simple_repeat Simple_repeat 3 47 0 25 0 0 0 chr21 18602567 18602592 -26304978 + AT_rich Low_complexity Low_complexity 1 25 0 307 344 78 44 chr21 18602960 18603230 -26304340 + MLT1L LTR MaLR 207 485 -130 667 285 54 41 chr21 18603270 18603786 -26303784 - L1MCc LINE L1 -2668 4273 3751 378 240 31 23 chr21 18603783 18603912 -26303658 - L1MCc LINE L1 -3493 3448 3319 * 1172 272 34 33 chr21 18603940 18604051 -26303519 - L1MCc LINE L1 -4887 1536 1427 1341 204 68 75 chr21 18604051 18604434 -26303136 + MLT1C LTR MaLR 1 382 -85 2124 128 0 22 chr21 18604434 18604746 -26302824 - AluSx SINE Alu -7 305 1 1341 204 68 75 chr21 18604746 18604832 -26302738 + MLT1C LTR MaLR 382 467 0 1172 272 34 33 chr21 18604832 18605314 -26302256 - L1MCc LINE L1 -4996 1427 1119 289 259 43 17 chr21 18605328 18605444 -26302126 - L1MCc LINE L1 -6231 192 74 467 83 119 0 chr21 18605710 18606086 -26301484 + (TA)n Simple_repeat Simple_repeat 1 420 0 371 89 102 0 chr21 18606114 18606271 -26301299 + (TA)n Simple_repeat Simple_repeat 2 174 0 316 208 69 69 chr21 18606277 18606421 -26301149 - L1MCa LINE L1 -4361 2065 1922 491 99 78 9 chr21 18606421 18606875 -26300695 + (TA)n Simple_repeat Simple_repeat 1 485 0 381 209 34 23 chr21 18606904 18607081 -26300489 + (TA)n Simple_repeat Simple_repeat 1 179 0 * 412 222 29 23 chr21 18607002 18607173 -26300397 + (TTATA)n Simple_repeat Simple_repeat 3 174 0 352 116 79 6 chr21 18607174 18607338 -26300232 + (TA)n Simple_repeat Simple_repeat 1 176 0 21 36 0 0 chr21 18607643 18607671 -26299899 + AT_rich Low_complexity Low_complexity 1 28 0 3210 147 18 43 chr21 18607698 18608318 -26299252 + L1MA3 LINE L1 5696 6299 -6 1422 223 80 11 chr21 18608553 18608903 -26298667 - MLT1A2 LTR MaLR 0 374 1 314 80 20 0 chr21 18609016 18609066 -26298504 + (CA)n Simple_repeat Simple_repeat 2 52 0 2164 101 0 0 chr21 18609827 18610113 -26297457 + AluSx SINE Alu 27 312 0 208 261 22 0 chr21 18610935 18610981 -26296589 - MIR SINE MIR -7 255 209 3655 102 2 4 chr21 18611118 18611627 -26295943 - MER9 LTR ERVK 0 511 4 216 0 0 0 chr21 18611627 18611651 -26295919 + (CA)n Simple_repeat Simple_repeat 2 25 0 408 319 47 43 chr21 18612136 18612390 -26295180 + MIR SINE MIR 1 255 -7 856 192 73 72 chr21 18612610 18613047 -26294523 - MLT1D LTR MaLR 0 505 1 292 335 121 18 chr21 18614055 18614201 -26293369 - L2 LINE L2 -8 3305 3175 2162 123 0 7 chr21 18614201 18614511 -26293059 + AluSq SINE Alu 2 309 -4 292 335 121 18 chr21 18614511 18614645 -26292925 - L2 LINE L2 -138 3175 2996 241 341 89 7 chr21 18615153 18615288 -26292282 - HAL1 LINE L1 -1618 889 744 314 394 42 34 chr21 18615341 18615605 -26291965 - HAL1 LINE L1 -1812 695 430 2061 239 96 13 chr21 18616418 18617053 -26290517 - MER76 LTR ERV 0 688 1 606 288 14 0 chr21 18617122 18617268 -26290302 + MIR SINE MIR 4 151 -111 1415 221 69 20 chr21 18617904 18618252 -26289318 + MLT1A1 LTR MaLR 1 365 0 22 35 0 0 chr21 18618524 18618553 -26289017 + AT_rich Low_complexity Low_complexity 1 29 0 261 0 0 0 chr21 18618823 18618852 -26288718 + (TA)n Simple_repeat Simple_repeat 2 30 0 401 102 17 0 chr21 18620256 18620315 -26287255 + MLT2A2 LTR ERVL 1 60 -393 679 65 0 0 chr21 18620316 18620408 -26287162 + AluY SINE Alu 212 303 -8 1667 187 21 38 chr21 18620411 18620917 -26286653 + MLT2A2 LTR ERVL 54 554 0 458 79 0 0 chr21 18621503 18621566 -26286004 - L1P3 LINE L1 -724 5430 5368 1992 134 0 0 chr21 18621566 18621879 -26285691 - L1P3 LINE L1 -1087 5059 4747 1975 143 3 10 chr21 18622531 18622839 -26284731 + AluSx SINE Alu 1 306 -6 2175 208 30 56 chr21 18623235 18623806 -26283764 - MER89 LTR ERV1 0 559 4 1820 61 0 0 chr21 18623920 18624148 -26283422 - L1PA7 LINE L1 -8 6146 5919 325 246 36 18 chr21 18625010 18625120 -26282450 + L1ME LINE L1 5717 5828 -293 369 207 0 0 chr21 18626746 18626833 -26280737 + (CA)n Simple_repeat Simple_repeat 2 88 0 25 0 0 0 chr21 18626864 18626889 -26280681 + AT_rich Low_complexity Low_complexity 1 25 0 2686 191 16 14 chr21 18627079 18627644 -26279926 - L1MB3 LINE L1 -1 6182 5617 293 297 30 30 chr21 18627740 18627841 -26279729 + L2 LINE L2 2610 2710 -604 240 385 67 15 chr21 18628106 18628301 -26279269 + L2 LINE L2 2971 3175 -138 213 39 0 0 chr21 18630230 18630256 -26277314 + (GA)n Simple_repeat Simple_repeat 2 27 0 23 33 0 0 chr21 18630708 18630738 -26276832 + AT_rich Low_complexity Low_complexity 1 30 0 722 223 51 6 chr21 18630878 18631053 -26276517 + L1PB4 LINE L1 5902 6084 -72 231 299 63 56 chr21 18631353 18631621 -26275949 + L1ME1 LINE L1 971 1240 -4879 1657 189 10 0 chr21 18632248 18632539 -26275031 - AluJb SINE Alu -16 296 3 458 197 88 36 chr21 18632587 18632724 -26274846 - L1 LINE L1 -1067 5079 4936 2063 191 98 7 chr21 18632724 18633144 -26274426 + LTR32 LTR ERVL 14 471 0 5266 173 22 3 chr21 18633149 18634183 -26273387 - L1 LINE L1 -1212 4934 3881 5064 170 30 28 chr21 18634181 18634546 -26273024 + L1MA4 LINE L1 5075 5438 -862 * 2849 10 0 0 chr21 18634546 18634859 -26272711 - AluYb8 SINE Alu -5 313 1 5064 170 30 28 chr21 18634859 18635678 -26271892 + L1MA4 LINE L1 5438 6266 -34 2109 183 52 0 chr21 18635678 18636083 -26271487 - MSTB LTR MaLR 0 426 1 5064 170 30 28 chr21 18636083 18636113 -26271457 + L1MA4 LINE L1 6266 6294 -6 895 277 85 72 chr21 18636230 18637275 -26270295 + L1ME1 LINE L1 1377 2435 -3875 1032 248 40 77 chr21 18637412 18637733 -26269837 + L1ME1 LINE L1 5482 5758 -387 946 156 6 39 chr21 18637733 18637913 -26269657 + L1PA16 LINE L1 5992 6165 -1 1032 248 40 77 chr21 18637913 18638278 -26269292 + L1ME1 LINE L1 5758 6135 -10 1326 159 15 8 chr21 18638383 18638647 -26268923 - L1MA4 LINE L1 -1 6299 6034 2191 88 3 10 chr21 18639064 18639359 -26268211 - AluSc SINE Alu -16 293 1 552 261 123 60 chr21 18639844 18640128 -26267442 + MER69 DNA AcHobo 1 302 -924 3822 183 23 33 chr21 18640235 18642858 -26264712 - L1MA8 LINE L1 -192 6099 3352 828 227 160 37 chr21 18643117 18643548 -26264022 + MER69 DNA AcHobo 2043 2526 0 285 273 162 7 chr21 18643650 18643804 -26263766 - MIR SINE MIR -27 235 58 1364 199 38 55 chr21 18644432 18644604 -26262966 + MLT1B LTR MaLR 1 175 -215 1994 137 3 3 chr21 18644604 18644904 -26262666 + AluJb SINE Alu 3 302 -10 1364 199 38 55 chr21 18644904 18645128 -26262442 + MLT1B LTR MaLR 175 390 0 1488 218 42 8 chr21 18645335 18645688 -26261882 - MLT1A1 LTR MaLR 0 365 1 256 357 54 0 chr21 18645792 18645904 -26261666 + L2 LINE L2 3196 3313 0 284 315 45 45 chr21 18646111 18646222 -26261348 - MIR SINE MIR -64 144 34 262 227 10 10 chr21 18647352 18647449 -26260121 + (TA)n Simple_repeat Simple_repeat 2 98 0 201 259 0 0 chr21 18647504 18647562 -26260008 + A-rich Low_complexity Low_complexity 1 58 0 22 0 0 0 chr21 18648436 18648458 -26259112 + AT_rich Low_complexity Low_complexity 1 22 0 1945 172 26 28 chr21 18649080 18649099 -26258471 - MLT1B LTR MaLR -2 388 370 1984 177 16 63 chr21 18649099 18649546 -26258024 - MSTC LTR MaLR 0 428 3 1945 172 26 28 chr21 18649546 18649915 -26257655 - MLT1B LTR MaLR -20 370 1 32 57 0 0 chr21 18650374 18650427 -26257143 + AT_rich Low_complexity Low_complexity 1 53 0 426 278 48 115 chr21 18651944 18652016 -26255554 + L1MEc LINE L1 38 113 -6283 1696 136 0 0 chr21 18652016 18652258 -26255312 + AluSg SINE Alu 49 290 -20 426 278 48 115 chr21 18652258 18652585 -26254985 + L1MEc LINE L1 113 410 -5986 1363 287 82 44 chr21 18652598 18653879 -26253691 + L1MEc LINE L1 901 2230 -4166 664 192 17 27 chr21 18653905 18654092 -26253478 + MER33 DNA MER1_type 1 172 -108 679 258 26 18 chr21 18654218 18654447 -26253123 + L1M4 LINE L1 4434 4664 -1482 220 169 17 17 chr21 18654570 18654629 -26252941 + (TA)n Simple_repeat Simple_repeat 2 60 0 435 38 0 0 chr21 18655273 18655326 -26252244 + (CA)n Simple_repeat Simple_repeat 2 54 0 205 366 14 0 chr21 18655911 18655982 -26251588 + L2 LINE L2 3177 3248 -24 21 36 0 0 chr21 18656145 18656173 -26251397 + AT_rich Low_complexity Low_complexity 1 28 0 499 302 81 25 chr21 18656237 18656558 -26251012 + MLT1H LTR MaLR 42 380 -169 27 29 0 0 chr21 18657149 18657183 -26250387 + AT_rich Low_complexity Low_complexity 1 34 0 285 244 0 0 chr21 18658140 18658226 -26249344 + (TA)n Simple_repeat Simple_repeat 1 86 0 254 266 0 21 chr21 18658323 18658417 -26249153 + L1MC4 LINE L1 6612 6703 -1339 31 0 0 0 chr21 18658495 18658526 -26249044 + AT_rich Low_complexity Low_complexity 1 31 0 30 27 0 0 chr21 18658688 18658725 -26248845 + AT_rich Low_complexity Low_complexity 1 37 0 308 283 88 18 chr21 18658871 18658984 -26248586 + MIR SINE MIR 104 224 -38 23 0 0 0 chr21 18659066 18659089 -26248481 + AT_rich Low_complexity Low_complexity 1 23 0 25 65 0 0 chr21 18659213 18659259 -26248311 + AT_rich Low_complexity Low_complexity 1 46 0 472 350 116 35 chr21 18660767 18661164 -26246406 - L2 LINE L2 -62 3251 2823 21 0 0 0 chr21 18661623 18661644 -26245926 + AT_rich Low_complexity Low_complexity 1 21 0 230 295 58 65 chr21 18661985 18662124 -26245446 - L2 LINE L2 -7 3306 3169 1939 116 61 7 chr21 18662368 18662661 -26244909 + AluSx SINE Alu 2 310 -2 4796 98 19 23 chr21 18662979 18663760 -26243810 - L1PA10 LINE L1 0 6168 5436 3569 143 31 2 chr21 18663760 18664203 -26243367 + L1P LINE L1 4725 5193 -975 261 0 0 0 chr21 18664203 18664232 -26243338 + (CA)n Simple_repeat Simple_repeat 2 30 0 3569 143 31 2 chr21 18664232 18664473 -26243097 + L1P LINE L1 5193 5426 -742 1386 276 28 42 chr21 18665793 18666391 -26241179 + MER92B LTR ERV1 1 590 -46 250 352 0 0 chr21 18666391 18666482 -26241088 + MER92B LTR ERV1 546 636 0 21 57 0 0 chr21 18666690 18666725 -26240845 + AT_rich Low_complexity Low_complexity 1 35 0 204 212 0 45 chr21 18667185 18667251 -26240319 + T-rich Low_complexity Low_complexity 1 63 0 1555 188 36 21 chr21 18668993 18669377 -26238193 + L1MB8 LINE L1 5789 6178 0 1445 208 0 30 chr21 18669400 18669698 -26237872 + AluJo SINE Alu 1 289 -23 224 211 0 0 chr21 18670211 18670263 -26237307 + (CA)n Simple_repeat Simple_repeat 2 53 0 2221 95 10 0 chr21 18670263 18670557 -26237013 - AluSp SINE Alu -16 297 1 180 0 0 0 chr21 18670563 18670583 -26236987 + (TTTTTG)n Simple_repeat Simple_repeat 3 22 0 2255 113 0 0 chr21 18671466 18671775 -26235795 + AluSg SINE Alu 1 309 -1 188 306 97 69 chr21 18671932 18672076 -26235494 + L3 LINE CR1 1120 1267 -310 1901 249 136 43 chr21 18672327 18673026 -26234544 - MER21B LTR ERV1 -79 784 21 2077 100 0 4 chr21 18673027 18673307 -26234263 - AluSg SINE Alu -9 301 23 874 280 49 36 chr21 18673445 18673749 -26233821 + MER92A LTR ERV1 3 310 -102 476 248 19 0 chr21 18674164 18674269 -26233301 - U6 snRNA snRNA 0 107 1 358 208 9 38 chr21 18675070 18675176 -26232394 + 7SK RNA RNA 1 103 -90 204 319 29 0 chr21 18676076 18676145 -26231425 + MER5A DNA MER1_type 4 74 -115 242 198 111 49 chr21 18676267 18676348 -26231222 + L3 LINE CR1 1484 1569 -8 373 362 67 22 chr21 18676713 18677025 -26230545 + L2 LINE L2 2560 2885 -429 21 71 0 0 chr21 18677827 18677869 -26229701 + AT_rich Low_complexity Low_complexity 1 42 0 1422 210 10 32 chr21 18677903 18678212 -26229358 + AluJb SINE Alu 1 302 -10 6821 139 20 18 chr21 18678249 18680023 -26227547 + L1MA1 LINE L1 4522 6302 0 239 351 61 0 chr21 18680299 18680413 -26227157 + L2 LINE L2 3193 3313 0 542 264 8 8 chr21 18680945 18681070 -26226500 - MER45A DNA AcHobo 0 178 54 195 343 148 24 chr21 18681360 18681529 -26226041 - MIR SINE MIR -4 258 69 830 234 11 16 chr21 18683374 18683558 -26224012 + MER2 DNA MER2_type 1 183 -162 * 8377 146 44 19 chr21 18683556 18684972 -26222598 - Tigger2 DNA MER2_type -6 2712 1262 5267 168 10 44 chr21 18684953 18685043 -26222527 - Tigger2 DNA MER2_type -1730 988 896 * 1936 125 4 0 chr21 18685043 18685324 -26222246 - AluY SINE Alu -29 282 1 5267 168 10 44 chr21 18685324 18685782 -26221788 - Tigger2 DNA MER2_type -1822 896 489 2288 100 0 0 chr21 18685782 18686082 -26221488 - AluSc SINE Alu -9 300 1 5267 168 10 44 chr21 18686082 18686555 -26221015 - Tigger2 DNA MER2_type -2229 489 1 483 221 86 7 chr21 18686558 18686698 -26220872 + MER2 DNA MER2_type 192 342 -3 2230 88 0 17 chr21 18686790 18687084 -26220486 + AluSc SINE Alu 1 289 -20 32 0 0 0 chr21 18687281 18687313 -26220257 + AT_rich Low_complexity Low_complexity 1 32 0 203 255 20 0 chr21 18687373 18687424 -26220146 - L2 LINE L2 -15 3257 3206 549 364 46 4 chr21 18687790 18688029 -26219541 + MIR SINE MIR 11 259 -3 1400 199 0 87 chr21 18689194 18689304 -26218266 + MLT1B LTR MaLR 1 119 -271 1922 157 7 0 chr21 18689304 18689604 -26217966 + AluSq SINE Alu 1 302 -11 1400 199 0 87 chr21 18689604 18689840 -26217730 + MLT1B LTR MaLR 119 317 -73 1111 168 62 0 chr21 18689892 18690101 -26217469 - Tigger1 DNA MER2_type -5 2413 2192 928 164 0 7 chr21 18690098 18690250 -26217320 - Tigger1 DNA MER2_type -2267 151 1 * 204 119 71 0 chr21 18690305 18690347 -26217223 + GA-rich Low_complexity Low_complexity 3 47 0 1401 277 75 16 chr21 18690347 18690733 -26216837 + MLT1E2 LTR MaLR 215 623 -3 207 0 0 0 chr21 18692468 18692491 -26215079 + (TG)n Simple_repeat Simple_repeat 2 24 0 40 49 0 0 chr21 18692846 18692907 -26214663 + AT_rich Low_complexity Low_complexity 1 61 0 2576 43 0 0 chr21 18692975 18693280 -26214290 + AluY SINE Alu 1 305 -6 420 359 9 14 chr21 18693708 18693920 -26213650 - MIR SINE MIR -4 258 48 1481 234 27 40 chr21 18694829 18695230 -26212340 + MSTD LTR MaLR 1 396 0 372 311 16 0 chr21 18695293 18695415 -26212155 - L1ME1 LINE L1 -9 6157 6034 532 279 6 0 chr21 18695432 18695593 -26211977 - L1ME1 LINE L1 -272 5894 5733 343 36 0 36 chr21 18695645 18695700 -26211870 + (TA)n Simple_repeat Simple_repeat 2 54 0 329 62 21 0 chr21 18695708 18695756 -26211814 + (TCTA)n Simple_repeat Simple_repeat 4 52 0 1523 187 17 6 chr21 18695800 18696103 -26211467 - Tigger3(Golem) DNA MER2_type 0 3037 90 7464 238 44 18 chr21 18696111 18699271 -26208299 - L1MC1 LINE L1 -76 6537 3276 1624 198 3 0 chr21 18699271 18699599 -26207971 + AluJb SINE Alu 1 329 0 7464 238 44 18 chr21 18699599 18699938 -26207632 - L1MC1 LINE L1 -3337 3276 2947 1406 185 0 4 chr21 18699959 18700197 -26207373 - AluJb SINE Alu -75 237 1 1077 282 8 3 chr21 18700271 18700640 -26206930 - L1MC1 LINE L1 -3548 2878 2508 * 4939 159 63 6 chr21 18700634 18701787 -26205783 + L1PA15 LINE L1 4954 6164 -1 2326 205 40 37 chr21 18701797 18702492 -26205078 - L1MC1 LINE L1 -3948 2478 1828 2499 165 14 27 chr21 18702492 18703008 -26204562 - L1MA9 LINE L1 0 6312 5804 824 153 45 0 chr21 18703009 18703166 -26204404 - L1MA9 LINE L1 -804 5508 5345 567 248 0 15 chr21 18703167 18703304 -26204266 + L1 LINE L1 4863 4997 -1149 372 240 0 48 chr21 18703298 18703423 -26204147 + L1 LINE L1 5221 5339 -807 * 6215 196 74 60 chr21 18703421 18705114 -26202456 - L1MC1 LINE L1 -4671 1936 33 21 36 0 0 chr21 18705266 18705294 -26202276 + AT_rich Low_complexity Low_complexity 1 28 0 250 157 45 11 chr21 18705329 18705418 -26202152 + (TA)n Simple_repeat Simple_repeat 1 92 0 25 65 0 0 chr21 18705482 18705528 -26202042 + AT_rich Low_complexity Low_complexity 1 46 0 227 214 0 0 chr21 18705624 18705666 -26201904 + (CATATA)n Simple_repeat Simple_repeat 2 43 0 359 351 35 12 chr21 18705829 18706000 -26201570 + MIR SINE MIR 88 262 0 4324 90 42 14 chr21 18707261 18707903 -26199667 + LTR30 LTR ERV1 63 722 0 391 238 0 0 chr21 18709350 18709434 -26198136 - AluSq SINE Alu -99 204 121 6762 66 6 9 chr21 18709474 18710979 -26196591 - L1PA7 LINE L1 -27 6127 4629 30 27 0 0 chr21 18711417 18711454 -26196116 + AT_rich Low_complexity Low_complexity 1 37 0 5265 100 1 3 chr21 18711498 18712245 -26195325 - L1PA8 LINE L1 -4 6168 5423 216 358 107 5 chr21 18712459 18712646 -26194924 + MIR SINE MIR 43 248 -14 25 0 0 0 chr21 18712851 18712876 -26194694 + AT_rich Low_complexity Low_complexity 1 25 0 258 179 0 0 chr21 18713462 18713518 -26194052 + GA-rich Low_complexity Low_complexity 1 56 0 289 79 0 0 chr21 18713710 18713748 -26193822 + MADE1 DNA Mariner 1 38 -42 188 237 0 0 chr21 18714013 18714051 -26193519 + MIR SINE MIR 25 62 -200 306 278 8 40 chr21 18714114 18714240 -26193330 - HsTC2 DNA Tc2 -1776 122 1 395 326 0 14 chr21 18714251 18714398 -26193172 + MIR SINE MIR 92 236 -26 22 70 0 0 chr21 18714435 18714478 -26193092 + AT_rich Low_complexity Low_complexity 1 43 0 270 333 76 0 chr21 18714695 18714827 -26192743 - MLT1J LTR MaLR -369 142 1 4795 174 84 15 chr21 18715209 18716163 -26191407 - LTR28 LTR ERV1 0 1020 1 218 327 10 29 chr21 18716284 18716388 -26191182 - L3b LINE CR1 -233 1350 1249 22 56 0 0 chr21 18717051 18717087 -26190483 + AT_rich Low_complexity Low_complexity 1 36 0 24 53 0 0 chr21 18719008 18719046 -26188524 + AT_rich Low_complexity Low_complexity 1 38 0 23 78 0 0 chr21 18720122 18720173 -26187397 + AT_rich Low_complexity Low_complexity 1 51 0 442 351 81 44 chr21 18721256 18721744 -26185826 - L2 LINE L2 -1 3271 2777 477 109 0 0 chr21 18721744 18721808 -26185762 - LTR12 LTR ERV1 -4 710 647 331 289 8 31 chr21 18721808 18721936 -26185634 - LTR30 LTR ERV1 -54 668 544 1364 43 319 0 chr21 18721936 18722146 -26185424 - LTR12 LTR ERV1 -437 277 1 2105 110 0 0 chr21 18724215 18724496 -26183074 - AluSc SINE Alu -28 281 1 1958 164 38 35 chr21 18725613 18726040 -26181530 - LTR23 LTR ERV1 0 437 10 25 0 0 0 chr21 18726154 18726179 -26181391 + AT_rich Low_complexity Low_complexity 1 25 0 871 157 0 0 chr21 18726466 18726606 -26180964 - FRAM SINE Alu -7 169 30 201 147 0 0 chr21 18726723 18726757 -26180813 + (TATG)n Simple_repeat Simple_repeat 3 36 0 4923 133 11 44 chr21 18726820 18727722 -26179848 + MER4D LTR ERV1 1 872 0 1621 236 119 33 chr21 18728119 18728391 -26179179 - MLT1F1 LTR MaLR 0 567 320 1924 159 36 36 chr21 18728391 18728755 -26178815 - THE1B LTR MaLR 0 364 1 1621 236 119 33 chr21 18728755 18729004 -26178566 - MLT1F1 LTR MaLR -247 320 1 581 204 10 124 chr21 18729602 18729803 -26177767 + MER101B LTR ERV1 1 178 -392 699 279 146 7 chr21 18731144 18731424 -26176146 + MLT1C LTR MaLR 146 464 -3 23 54 0 0 chr21 18732885 18732922 -26174648 + AT_rich Low_complexity Low_complexity 1 37 0 200 292 31 0 chr21 18733304 18733369 -26174201 + L2 LINE L2 1598 1664 -1650 211 111 0 28 chr21 18733731 18733767 -26173803 + (CA)n Simple_repeat Simple_repeat 2 36 0 21 0 0 0 chr21 18734314 18734335 -26173235 + AT_rich Low_complexity Low_complexity 1 21 0 192 40 0 0 chr21 18735429 18735454 -26172116 + (TC)n Simple_repeat Simple_repeat 2 26 0 21 0 0 0 chr21 18735486 18735507 -26172063 + AT_rich Low_complexity Low_complexity 1 21 0 191 257 14 0 chr21 18735596 18735670 -26171900 + CT-rich Low_complexity Low_complexity 1 75 0 2070 120 7 13 chr21 18736287 18736586 -26170984 + AluSx SINE Alu 1 297 -15 972 128 0 0 chr21 18737019 18737152 -26170418 + AluSp SINE Alu 3 135 -178 362 339 164 27 chr21 18737173 18737654 -26169916 + L2 LINE L2 1743 2289 -1025 534 316 52 0 chr21 18737812 18737967 -26169603 - LTR16A LTR ERVL -87 363 201 272 305 65 25 chr21 18739048 18739248 -26168322 - HERV16 LTR ERVL -992 4493 4286 2218 137 24 19 chr21 18739427 18739800 -26167770 - THE1C LTR MaLR 0 375 1 183 42 0 0 chr21 18739866 18739890 -26167680 + (CAAAAA)n Simple_repeat Simple_repeat 2 25 0 512 300 25 30 chr21 18740523 18740723 -26166847 - HERV16 LTR ERVL -3204 1792 1594 265 287 27 87 chr21 18740818 18740968 -26166602 - HERV16 LTR ERVL -4230 1534 1394 286 176 35 71 chr21 18741072 18741157 -26166413 - HERV16 LTR ERVL -4044 952 871 487 96 108 0 chr21 18741941 18742024 -26165546 - MLT1B LTR MaLR -283 107 16 321 354 28 7 chr21 18742215 18742359 -26165211 + L2 LINE L2 3153 3299 -14 2160 162 14 0 chr21 18742434 18742793 -26164777 - THE1B LTR MaLR 0 364 1 1152 281 52 97 chr21 18745499 18745753 -26161817 + L2 LINE L2 1876 2140 -1174 2072 157 54 40 chr21 18745753 18746179 -26161391 - MSTB1 LTR MaLR 0 432 1 1152 281 52 97 chr21 18746179 18746758 -26160812 + L2 LINE L2 2140 2671 -643 2521 180 19 17 chr21 18746758 18747231 -26160339 - Tigger5 DNA MER2_type -1 2322 1849 1904 114 2 119 chr21 18747261 18747663 -26159907 - THE1A LTR MaLR 0 355 1 2411 93 3 0 chr21 18747667 18747991 -26159579 - THE1A-int LTR MaLR -4 1576 1252 1030 171 8 87 chr21 18748017 18748269 -26159301 + THE1A LTR MaLR 124 355 0 3146 85 6 60 chr21 18748272 18748772 -26158798 + THE1-int LTR MaLR 3 478 -1102 428 212 13 4 chr21 18749178 18749423 -26158147 + (TA)n Simple_repeat Simple_repeat 1 247 0 1471 177 14 22 chr21 18749424 18749701 -26157869 + AluJb SINE Alu 1 275 -37 341 90 103 0 chr21 18749718 18749873 -26157697 + (TA)n Simple_repeat Simple_repeat 1 171 0 296 193 11 23 chr21 18749881 18749969 -26157601 + (TATAA)n Simple_repeat Simple_repeat 2 88 0 266 108 84 0 chr21 18749979 18750062 -26157508 + (TA)n Simple_repeat Simple_repeat 2 91 0 414 298 32 64 chr21 18750095 18750313 -26157257 + L2 LINE L2 3084 3294 -19 23587 171 19 24 chr21 18751142 18753631 -26153939 + L1PA10 LINE L1 3 2504 -3979 2178 106 3 3 chr21 18753631 18753934 -26153636 + AluY SINE Alu 1 303 -8 23587 171 19 24 chr21 18753934 18757791 -26149779 + L1PA10 LINE L1 2504 6481 -2 22 35 0 0 chr21 18758109 18758138 -26149432 + AT_rich Low_complexity Low_complexity 1 29 0 1056 218 55 117 chr21 18758758 18759125 -26148445 + MLT1C LTR MaLR 59 396 -71 2186 118 0 0 chr21 18759125 18759422 -26148148 - AluSg1 SINE Alu -12 297 1 1056 218 55 117 chr21 18759422 18759490 -26148080 + MLT1C LTR MaLR 396 467 0 23 0 0 0 chr21 18759555 18759578 -26147992 + AT_rich Low_complexity Low_complexity 1 23 0 2119 106 27 0 chr21 18760076 18760369 -26147201 - AluSg1 SINE Alu -8 301 1 314 259 0 36 chr21 18760605 18760717 -26146853 - LTR41 LTR ERVL -12 761 654 1930 174 36 72 chr21 18761260 18761453 -26146117 + MLT2A2 LTR ERVL 1 199 -355 2488 34 41 0 chr21 18761453 18761745 -26145825 + AluY SINE Alu 1 304 -7 1930 174 36 72 chr21 18761745 18762131 -26145439 + MLT2A2 LTR ERVL 199 554 0 286 242 234 16 chr21 18762156 18762280 -26145290 - LTR41 LTR ERVL -622 151 1 21 0 0 0 chr21 18763136 18763157 -26144413 + AT_rich Low_complexity Low_complexity 1 21 0 330 339 16 0 chr21 18763328 18763449 -26144121 + MIR SINE MIR 18 140 -122 366 23 0 0 chr21 18764170 18764213 -26143357 + (TG)n Simple_repeat Simple_repeat 2 44 0 182 354 0 0 chr21 18764488 18764570 -26143000 + MIR SINE MIR 179 260 -2 1974 145 0 16 chr21 18764816 18765133 -26142437 + AluJb SINE Alu 1 312 0 198 143 0 0 chr21 18765672 18765707 -26141863 + (TG)n Simple_repeat Simple_repeat 1 35 0 1145 190 9 22 chr21 18766240 18766472 -26141098 - L1MC1 LINE L1 -2 6331 6103 337 267 154 10 chr21 18766960 18767155 -26140415 - L1 LINE L1 -1633 4513 4291 417 331 87 12 chr21 18767319 18767561 -26140009 - L1 LINE L1 -3753 2393 2134 213 288 0 14 chr21 18767689 18767762 -26139808 + A-rich Low_complexity Low_complexity 2 73 0 357 24 0 0 chr21 18767771 18767813 -26139757 + (CA)n Simple_repeat Simple_repeat 2 43 0 235 174 0 29 chr21 18767909 18767978 -26139592 + (TA)n Simple_repeat Simple_repeat 1 67 0 248 300 0 0 chr21 18768281 18768371 -26139199 - L1MC4 LINE L1 -1339 6703 6614 300 53 0 0 chr21 18768371 18768409 -26139161 + (TA)n Simple_repeat Simple_repeat 2 39 0 333 0 0 0 chr21 18768409 18768446 -26139124 + (GA)n Simple_repeat Simple_repeat 2 38 0 189 329 82 39 chr21 18768756 18768987 -26138583 + L2 LINE L2 1822 2062 -1252 1636 167 0 42 chr21 18769044 18769350 -26138220 + AluJb SINE Alu 4 296 -16 3284 77 13 24 chr21 18769813 18770269 -26137301 + MLT2A2 LTR ERVL 3 453 0 379 312 38 32 chr21 18770538 18770695 -26136875 - MIR SINE MIR -64 198 41 323 291 36 0 chr21 18770901 18771011 -26136559 + MIR SINE MIR 64 177 -85 424 314 85 27 chr21 18772368 18772626 -26134944 - L2 LINE L2 0 3313 3041 22 0 0 0 chr21 18772705 18772727 -26134843 + AT_rich Low_complexity Low_complexity 1 22 0 3082 173 41 125 chr21 18772828 18773315 -26134255 - L1MC2 LINE L1 -11 6333 5807 2166 113 3 3 chr21 18773315 18773615 -26133955 - AluSx SINE Alu -10 302 3 3082 173 41 125 chr21 18773615 18774358 -26133212 - L1MC2 LINE L1 -537 5807 5204 5349 261 63 14 chr21 18774361 18776502 -26131068 - L1MC2 LINE L1 -1207 4939 2693 268 311 59 25 chr21 18776814 18776933 -26130637 - LTR16C LTR ERVL -178 313 191 23 74 0 42 chr21 18777582 18777677 -26129893 + AT_rich Low_complexity Low_complexity 1 91 0 1658 294 114 11 chr21 18777850 18778490 -26129080 + L1MA9 LINE L1 12 717 -5238 483 186 0 59 chr21 18778480 18778598 -26128972 - L1 LINE L1 -1030 5116 5006 * 1348 240 45 73 chr21 18778709 18779388 -26128182 + L1MA9 LINE L1 578 1272 -4693 4453 164 33 76 chr21 18779399 18780726 -26126844 + L1MA9 LINE L1 4530 5760 -440 2096 69 0 0 chr21 18780726 18781001 -26126569 + L1PA5 LINE L1 5878 6152 -2 4453 164 33 76 chr21 18781001 18781423 -26126147 + L1MA9 LINE L1 5760 6199 -1 21 36 0 0 chr21 18782877 18782905 -26124665 + AT_rich Low_complexity Low_complexity 1 28 0 288 422 58 0 chr21 18783194 18783367 -26124203 + MER91A DNA MER1_type 2 184 -12 40 49 0 0 chr21 18783815 18783876 -26123694 + AT_rich Low_complexity Low_complexity 1 61 0 2525 184 56 26 chr21 18783967 18784020 -26123550 - L1MA7 LINE L1 -8 6283 6233 225 0 0 0 chr21 18784020 18784045 -26123525 + (TA)n Simple_repeat Simple_repeat 1 25 0 2525 184 56 26 chr21 18784045 18784567 -26123003 - L1MA7 LINE L1 -58 6233 5691 29 60 0 0 chr21 18784879 18784929 -26122641 + AT_rich Low_complexity Low_complexity 1 50 0 440 111 85 0 chr21 18786886 18787039 -26120531 + (TA)n Simple_repeat Simple_repeat 1 166 0 2035 179 46 113 chr21 18788532 18789080 -26118490 + MLT2B2 LTR ERVL 5 515 0 24 67 0 0 chr21 18789466 18789511 -26118059 + AT_rich Low_complexity Low_complexity 1 45 0 547 288 58 89 chr21 18790194 18790576 -26116994 + LTR33A LTR ERVL 1 370 -153 183 100 0 0 chr21 18790865 18790895 -26116675 + (TTTTTG)n Simple_repeat Simple_repeat 4 33 0 195 346 39 0 chr21 18792828 18792906 -26114664 + L2 LINE L2 3230 3310 -3 2605 244 40 2 chr21 18793394 18794014 -26113556 - MER82 DNA MER2_type 0 653 10 2169 81 56 0 chr21 18794018 18794302 -26113268 + AluY SINE Alu 1 300 -11 1283 224 61 20 chr21 18794479 18794774 -26112796 + AluJo SINE Alu 1 307 -5 13248 160 34 6 chr21 18795007 18797336 -26110234 + Tigger1 DNA MER2_type 24 2417 -1 29 60 0 0 chr21 18797580 18797630 -26109940 + AT_rich Low_complexity Low_complexity 1 50 0 261 242 0 16 chr21 18799081 18799143 -26108427 - MLT1J2 LTR MaLR 0 450 390 559 168 19 0 chr21 18799154 18799261 -26108309 - L1MB1 LINE L1 -271 5897 5789 292 133 85 0 chr21 18799262 18799330 -26108240 + L1MB1 LINE L1 6099 6171 0 21 0 0 0 chr21 18800944 18800965 -26106605 + AT_rich Low_complexity Low_complexity 1 21 0 23 78 0 0 chr21 18801570 18801621 -26105949 + AT_rich Low_complexity Low_complexity 1 51 0 534 274 131 28 chr21 18802882 18803134 -26104436 - LTR33 LTR ERVL -207 314 37 600 205 80 89 chr21 18803167 18803504 -26104066 + L1M4 LINE L1 4511 4844 -1302 603 278 71 39 chr21 18803560 18803996 -26103574 - Charlie2 DNA MER1_type -524 2338 1889 233 337 0 0 chr21 18804660 18804758 -26102812 + (CATA)n Simple_repeat Simple_repeat 2 99 0 299 345 55 27 chr21 18805095 18805315 -26102255 - LTR16A1 LTR ERVL -18 439 214 1106 115 19 0 chr21 18805411 18805568 -26102002 + AluSg/x SINE Alu 132 291 -21 24 0 0 0 chr21 18805802 18805826 -26101744 + AT_rich Low_complexity Low_complexity 1 24 0 809 153 0 0 chr21 18805922 18806053 -26101517 + FLAM_A SINE Alu 3 133 0 696 276 22 22 chr21 18806270 18806498 -26101072 + MIR SINE MIR 6 233 -29 725 295 4 18 chr21 18806584 18806811 -26100759 - MER58A DNA MER1_type 0 224 1 2118 89 21 3 chr21 18807774 18808056 -26099514 - AluSq SINE Alu -26 287 1 207 204 0 0 chr21 18808349 18808393 -26099177 + T-rich Low_complexity Low_complexity 1 44 0 1079 0 62 0 chr21 18808960 18809106 -26098464 + (TTTTA)n Simple_repeat Simple_repeat 5 159 0 1948 121 0 14 chr21 18809108 18809398 -26098172 - AluSx SINE Alu -26 286 1 302 303 87 76 chr21 18809443 18809628 -26097942 - HAL1b LINE L1 -845 503 317 908 183 51 108 chr21 18809820 18810115 -26097455 - L1MD2 LINE L1 -3 6356 6079 4044 250 64 60 chr21 18810118 18811876 -26095694 - L1MD2 LINE L1 -696 5546 3754 2332 92 0 0 chr21 18811876 18812180 -26095390 + AluSg SINE Alu 1 304 -6 4044 250 64 60 chr21 18812180 18812756 -26094814 - L1MD2 LINE L1 -2488 3754 3181 2219 113 71 11 chr21 18813034 18813388 -26094182 - THE1C LTR MaLR 0 375 1 2377 151 11 0 chr21 18813782 18814153 -26093417 - THE1C LTR MaLR 0 375 1 2919 67 0 0 chr21 18814324 18814700 -26092870 - L1PA5 LINE L1 -1 6153 5778 1109 222 19 5 chr21 18815896 18816112 -26091458 - MLT1A1 LTR MaLR 0 365 147 1033 191 0 47 chr21 18816114 18816329 -26091241 - L1P LINE L1 -2208 3938 3734 976 138 108 15 chr21 18816328 18816531 -26091039 - L1P4 LINE L1 -691 6177 5956 * 2573 93 6 0 chr21 18816535 18816888 -26090682 - THE1A LTR MaLR 0 355 1 1943 89 4 4 chr21 18816888 18817157 -26090413 - THE1A-int LTR MaLR 0 1580 1312 * 3989 95 0 0 chr21 18817152 18817698 -26089872 - THE1A-int LTR MaLR -1034 546 1 2549 96 3 25 chr21 18817698 18818061 -26089509 - THE1A LTR MaLR 0 355 1 11770 235 36 35 chr21 18818063 18819419 -26088151 - L1P4 LINE L1 -894 5954 4600 300 27 0 0 chr21 18819419 18819456 -26088114 + (TG)n Simple_repeat Simple_repeat 1 37 0 11770 235 36 35 chr21 18819456 18819664 -26087906 - L1P4 LINE L1 -2248 4600 4394 2491 105 8 0 chr21 18819664 18820016 -26087554 - THE1A LTR MaLR 0 355 1 10655 117 25 0 chr21 18820016 18821558 -26086012 - THE1A-int LTR MaLR 0 1580 1 2228 91 109 0 chr21 18821558 18821878 -26085692 - THE1A LTR MaLR 0 355 1 11770 235 36 35 chr21 18821878 18822555 -26085015 - L1P4 LINE L1 -2454 4394 3719 1514 209 150 3 chr21 18822555 18822928 -26084642 + MSTA LTR MaLR 1 428 0 11770 235 36 35 chr21 18822928 18824038 -26083532 - L1P4 LINE L1 -3129 3719 2611 1376 240 21 3 chr21 18824038 18824325 -26083245 + AluJb SINE Alu 1 292 -10 11770 235 36 35 chr21 18824325 18826946 -26080624 - L1P4 LINE L1 -4237 2611 10 240 59 0 0 chr21 18826959 18826993 -26080577 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 21 57 0 0 chr21 18827589 18827624 -26079946 + AT_rich Low_complexity Low_complexity 1 35 0 30 27 0 0 chr21 18828160 18828197 -26079373 + AT_rich Low_complexity Low_complexity 1 37 0 1766 169 21 24 chr21 18828237 18828609 -26078961 - THE1C LTR MaLR 0 375 5 9519 139 35 12 chr21 18828614 18830158 -26077412 - THE1C-int LTR MaLR -1 1579 1 1997 140 26 34 chr21 18830158 18830536 -26077034 - THE1C LTR MaLR 0 375 1 1376 115 46 5 chr21 18831081 18831298 -26076272 + MER30 DNA MER1_type 5 230 0 23 0 0 87 chr21 18831442 18831466 -26076104 + AT_rich Low_complexity Low_complexity 1 21 -21 2254 77 3 14 chr21 18831466 18831763 -26075807 - AluSq SINE Alu -19 294 1 23 0 0 87 chr21 18831763 18831784 -26075786 + AT_rich Low_complexity Low_complexity 21 42 0 657 303 94 54 chr21 18832067 18832493 -26075077 - LTR16A1 LTR ERVL -14 443 1 2290 102 0 0 chr21 18833395 18833700 -26073870 - AluSx SINE Alu -7 305 1 25 65 0 0 chr21 18834705 18834751 -26072819 + AT_rich Low_complexity Low_complexity 1 46 0 500 325 64 13 chr21 18834918 18835152 -26072418 + Charlie8 DNA MER1_type 12 257 -2160 21 36 0 0 chr21 18835646 18835674 -26071896 + AT_rich Low_complexity Low_complexity 1 28 0 351 284 70 70 chr21 18835758 18836099 -26071471 - L1ME LINE L1 -297 5824 5484 190 325 8 114 chr21 18836244 18836367 -26071203 + MIR SINE MIR 5 114 -148 22 35 0 0 chr21 18836423 18836452 -26071118 + AT_rich Low_complexity Low_complexity 1 29 0 1080 30 0 0 chr21 18836453 18836584 -26070986 - L1PA6 LINE L1 -2 6152 6022 1724 103 136 7 chr21 18836707 18836980 -26070590 - AluSg1 SINE Alu -1 308 1 615 236 10 45 chr21 18837420 18837619 -26069951 - MER3 DNA MER1_type -9 200 9 2020 185 5 16 chr21 18838689 18839056 -26068514 - MLT1A1 LTR MaLR -2 363 1 21 57 0 0 chr21 18839300 18839335 -26068235 + AT_rich Low_complexity Low_complexity 1 35 0 399 182 0 0 chr21 18839521 18839598 -26067972 + (TA)n Simple_repeat Simple_repeat 2 78 0 26 64 0 0 chr21 18839615 18839662 -26067908 + AT_rich Low_complexity Low_complexity 1 47 0 1572 271 136 4 chr21 18839882 18840417 -26067153 - MLT1E2 LTR MaLR 0 626 21 4816 177 36 12 chr21 18840468 18841433 -26066137 - L1MC2 LINE L1 -3 6341 5354 481 345 78 43 chr21 18842165 18842603 -26064967 + HAL1 LINE L1 1089 1541 -966 2190 44 7 11 chr21 18842898 18843168 -26064402 - AluY SINE Alu -9 302 34 668 182 157 6 chr21 18843275 18843434 -26064136 - MSTA LTR MaLR -245 183 1 318 301 107 42 chr21 18843757 18844186 -26063384 + L1ME4a LINE L1 5558 6014 -107 38 68 0 0 chr21 18844483 18844556 -26063014 + AT_rich Low_complexity Low_complexity 1 73 0 27 29 0 0 chr21 18844753 18844787 -26062783 + AT_rich Low_complexity Low_complexity 1 34 0 425 263 20 26 chr21 18845060 18845212 -26062358 - L1MA9 LINE L1 -39 6273 6123 748 266 57 54 chr21 18845453 18845787 -26061783 - L1MC4a LINE L1 -1868 5940 5606 28 48 0 0 chr21 18845828 18845870 -26061700 + AT_rich Low_complexity Low_complexity 1 42 0 327 340 19 13 chr21 18846914 18847070 -26060500 + MLT2E LTR ERVL 238 394 -234 361 354 50 34 chr21 18848291 18848613 -26058957 + HAL1b LINE L1 395 721 -627 662 227 100 36 chr21 18849206 18849536 -26058034 + L1M4 LINE L1 2901 3251 -2895 871 223 20 95 chr21 18849587 18849977 -26057593 + L1M4 LINE L1 4133 4493 -1653 1729 142 59 14 chr21 18849980 18850268 -26057302 + AluSx SINE Alu 1 301 -11 699 230 113 24 chr21 18850294 18850440 -26057130 + L1MC3 LINE L1 6352 6484 -1301 2015 199 26 26 chr21 18850440 18850866 -26056704 + MSTB LTR MaLR 1 426 0 699 230 113 24 chr21 18850866 18850967 -26056603 + L1MC3 LINE L1 6484 6621 -1164 1316 248 88 29 chr21 18850990 18851446 -26056124 + MER74B LTR ERVL 66 548 -74 3039 186 108 116 chr21 18851514 18852022 -26055548 + L1MC3 LINE L1 6631 7142 -643 263 256 26 26 chr21 18852022 18852100 -26055470 + MLT1F1 LTR MaLR 45 122 -445 3039 186 108 116 chr21 18852100 18852351 -26055219 + L1MC3 LINE L1 7142 7394 -391 950 217 146 96 chr21 18852351 18852552 -26055018 + MLT1D LTR MaLR 3 192 -313 2128 138 0 0 chr21 18852552 18852864 -26054706 - AluSx SINE Alu 0 312 1 950 217 146 96 chr21 18852864 18853141 -26054429 + MLT1D LTR MaLR 192 505 0 3039 186 108 116 chr21 18853141 18853438 -26054132 + L1MC3 LINE L1 7394 7755 -30 27 29 0 0 chr21 18853728 18853762 -26053808 + AT_rich Low_complexity Low_complexity 1 34 0 21 36 0 0 chr21 18853873 18853901 -26053669 + AT_rich Low_complexity Low_complexity 1 28 0 198 0 0 0 chr21 18853978 18854000 -26053570 + (T)n Simple_repeat Simple_repeat 1 22 0 246 121 0 0 chr21 18854236 18854269 -26053301 + U2 snRNA snRNA 1 33 -155 294 285 109 42 chr21 18854289 18854557 -26053013 + MLT1E2 LTR MaLR 1 261 -365 1806 191 70 31 chr21 18854586 18855120 -26052450 - MLT2A2 LTR ERVL 0 554 1 881 249 26 0 chr21 18855127 18855320 -26052250 + MLT1E2 LTR MaLR 318 515 -111 3813 171 125 34 chr21 18856016 18857061 -26050509 - MER52C LTR ERV1 0 1278 1 22 0 0 0 chr21 18857323 18857345 -26050225 + AT_rich Low_complexity Low_complexity 1 22 0 234 0 0 0 chr21 18858060 18858086 -26049484 + (CA)n Simple_repeat Simple_repeat 1 26 0 2324 68 0 10 chr21 18858206 18858545 -26049025 + AluY SINE Alu 1 311 0 194 215 0 15 chr21 18859866 18859931 -26047639 + (CATATA)n Simple_repeat Simple_repeat 6 69 0 1323 289 97 23 chr21 18860526 18862034 -26045536 - L1ME3A LINE L1 0 6170 4541 2442 43 0 0 chr21 18863480 18863798 -26043772 + AluY SINE Alu 1 318 0 564 106 0 0 chr21 18864423 18864508 -26043062 - L1PA8 LINE L1 -1 6171 6087 2669 40 0 0 chr21 18865973 18866276 -26041294 + AluY SINE Alu 2 304 -7 30 27 0 0 chr21 18866422 18866459 -26041111 + AT_rich Low_complexity Low_complexity 1 37 0 2278 82 13 13 chr21 18867142 18867447 -26040123 + AluY SINE Alu 1 305 -6 2062 131 152 8 chr21 18867577 18867951 -26039619 + MSTA LTR MaLR 1 428 0 187 206 0 0 chr21 18869286 18869320 -26038250 - L2 LINE L2 -12 3301 3268 333 0 0 0 chr21 18871511 18871548 -26036022 + (TG)n Simple_repeat Simple_repeat 2 38 0 22 0 0 0 chr21 18871771 18871793 -26035777 + AT_rich Low_complexity Low_complexity 1 22 0 319 301 122 39 chr21 18872014 18872170 -26035400 + MER5B DNA MER1_type 4 172 -6 213 294 0 0 chr21 18872190 18872241 -26035329 - MER5A DNA MER1_type -6 183 133 263 308 51 17 chr21 18872370 18872487 -26035083 + L1MEc LINE L1 638 758 -5447 280 150 17 17 chr21 18872649 18872709 -26034861 + L1ME4a LINE L1 5841 5900 -221 225 0 0 0 chr21 18872709 18872734 -26034836 + (TA)n Simple_repeat Simple_repeat 1 25 0 317 324 48 14 chr21 18874241 18874386 -26033184 + MER110-int LTR ERV1 577 726 -3921 180 77 0 0 chr21 18875130 18875156 -26032414 + (TTTA)n Simple_repeat Simple_repeat 1 26 0 1546 77 15 58 chr21 18875160 18875419 -26032151 - L1MA1 LINE L1 -10 6292 6045 1981 128 0 20 chr21 18875508 18875812 -26031758 + AluSx SINE Alu 1 298 -14 1369 178 0 8 chr21 18877345 18877587 -26029983 - L1PA16 LINE L1 -9 6157 5918 344 177 0 16 chr21 18877588 18877650 -26029920 + L1PA16 LINE L1 6078 6138 -28 267 154 39 0 chr21 18877655 18877707 -26029863 + L1PA16 LINE L1 5918 5971 -195 * 983 148 13 18 chr21 18877699 18877885 -26029685 - L1PA16 LINE L1 -247 5919 5726 381 369 52 9 chr21 18877944 18878177 -26029393 - MIR SINE MIR -2 260 18 501 306 52 32 chr21 18878194 18878540 -26029030 + L1MEc LINE L1 1440 1792 -4604 24 32 0 0 chr21 18878717 18878748 -26028822 + AT_rich Low_complexity Low_complexity 1 31 0 1630 188 10 3 chr21 18879091 18879384 -26028186 + AluJo SINE Alu 8 302 -10 1730 136 3 31 chr21 18879820 18880106 -26027464 + AluJb SINE Alu 14 291 -21 236 336 12 12 chr21 18880139 18880242 -26027328 - MIR SINE MIR -62 146 44 484 132 13 0 chr21 18881351 18881427 -26026143 + MADE1 DNA Mariner 3 79 -1 954 260 85 81 chr21 18881429 18881794 -26025776 - MLT1H1 LTR MaLR -57 533 165 2184 82 3 0 chr21 18881794 18882121 -26025449 - AluY SINE Alu 0 328 1 954 260 85 81 chr21 18882121 18882278 -26025292 - MLT1H1 LTR MaLR -425 165 10 2169 114 0 3 chr21 18884480 18884778 -26022792 - AluSx SINE Alu -15 297 1 22 0 0 0 chr21 18884904 18884926 -26022644 + AT_rich Low_complexity Low_complexity 1 22 0 43 81 0 0 chr21 18885007 18885106 -26022464 + AT_rich Low_complexity Low_complexity 1 99 0 633 219 0 0 chr21 18885295 18885414 -26022156 - FLAM_A SINE Alu -11 122 4 2201 249 86 76 chr21 18886127 18887528 -26020042 + L1MB8 LINE L1 587 1990 -4656 1906 145 3 7 chr21 18887528 18887824 -26019746 - AluSx SINE Alu -17 295 1 2201 249 86 76 chr21 18887824 18887933 -26019637 + L1MB8 LINE L1 1990 2096 -4550 2005 248 74 41 chr21 18888089 18889098 -26018472 + L1MB8 LINE L1 3166 4208 -2436 1379 256 30 46 chr21 18889125 18889625 -26017945 + LTR55 LTR ERV 52 543 -5 1814 259 29 28 chr21 18889635 18890249 -26017321 + L1MB8 LINE L1 4217 4831 -1813 * 2695 224 41 61 chr21 18890235 18891296 -26016274 + L1MB8 LINE L1 5633 6674 -2 597 299 126 10 chr21 18891498 18891705 -26015865 + MIR SINE MIR 28 258 -4 24 32 0 0 chr21 18892435 18892466 -26015104 + AT_rich Low_complexity Low_complexity 1 31 0 1978 133 0 3 chr21 18893495 18893808 -26013762 + AluSx SINE Alu 1 312 0 228 186 23 0 chr21 18894062 18894105 -26013465 - L2 LINE L2 -3 3310 3267 339 376 55 5 chr21 18894585 18894787 -26012783 + MIR SINE MIR 51 262 0 1923 137 0 0 chr21 18895478 18895755 -26011815 + AluSx SINE Alu 21 297 -15 4126 120 5 0 chr21 18896440 18897038 -26010532 - L1PA10 LINE L1 -4 6164 5564 2231 118 0 0 chr21 18897856 18898169 -26009401 - AluSq SINE Alu 0 313 1 525 294 83 18 chr21 18898712 18898940 -26008630 - MIR SINE MIR -13 249 7 2186 153 109 10 chr21 18899015 18899426 -26008144 - LTR47A LTR ERVL 0 452 1 544 284 6 25 chr21 18899859 18900021 -26007549 + MIR3 SINE MIR 47 205 -3 2368 88 7 0 chr21 18901496 18901803 -26005767 + AluSq SINE Alu 3 311 -2 504 255 118 7 chr21 18902446 18902599 -26004971 - MLT1E2 LTR MaLR -374 252 83 180 77 0 0 chr21 18902652 18902678 -26004892 + (A)n Simple_repeat Simple_repeat 1 26 0 234 289 0 0 chr21 18902694 18902746 -26004824 + LTR30 LTR ERV1 1 52 -670 512 173 130 82 chr21 18902746 18902908 -26004662 + LTR12 LTR ERV1 53 230 -484 2328 67 0 0 chr21 18902908 18903214 -26004356 + AluY SINE Alu 1 306 0 512 173 130 82 chr21 18903214 18903258 -26004312 + LTR12 LTR ERV1 230 270 -444 236 186 59 76 chr21 18903258 18903376 -26004194 + LTR25 LTR ERV1 608 723 -71 563 139 0 20 chr21 18903376 18903477 -26004093 + LTR12 LTR ERV1 492 590 -124 343 319 37 29 chr21 18903485 18903758 -26003812 + L1MEc LINE L1 1908 2182 -4214 246 181 0 96 chr21 18903782 18903876 -26003694 + L1MEc LINE L1 2216 2300 -3915 1315 239 75 92 chr21 18903889 18904754 -26002816 + L1M4 LINE L1 3836 4682 -1464 1499 181 65 0 chr21 18904754 18905014 -26002556 - AluSg SINE Alu -33 277 1 1315 239 75 92 chr21 18905014 18905176 -26002394 + L1M4 LINE L1 4682 4845 -1301 302 294 0 22 chr21 18905194 18905286 -26002284 - L1MC4 LINE L1 -1339 6703 6614 * 329 275 0 22 chr21 18905228 18905319 -26002251 + L1MC4 LINE L1 6614 6702 -1340 322 376 0 0 chr21 18905330 18905492 -26002078 + (TATATG)n Simple_repeat Simple_repeat 3 164 0 324 0 0 0 chr21 18905509 18905545 -26002025 + (CA)n Simple_repeat Simple_repeat 2 37 0 198 0 0 0 chr21 18905546 18905568 -26002002 + (TA)n Simple_repeat Simple_repeat 1 22 0 189 0 0 0 chr21 18905616 18905637 -26001933 + (CA)n Simple_repeat Simple_repeat 2 22 0 189 0 0 0 chr21 18905683 18905704 -26001866 + (TA)n Simple_repeat Simple_repeat 2 22 0 183 80 0 0 chr21 18905776 18905801 -26001769 + (TA)n Simple_repeat Simple_repeat 1 25 0 226 164 10 144 chr21 18905873 18905977 -26001593 + L1MC4 LINE L1 6614 6703 -1339 192 77 0 0 chr21 18905977 18906003 -26001567 + (CA)n Simple_repeat Simple_repeat 2 27 0 484 219 0 14 chr21 18906082 18906228 -26001342 + (TA)n Simple_repeat Simple_repeat 1 144 0 319 253 0 22 chr21 18906239 18906331 -26001239 + (TATATG)n Simple_repeat Simple_repeat 1 89 0 288 0 0 0 chr21 18906383 18906415 -26001155 + (TA)n Simple_repeat Simple_repeat 1 32 0 186 133 0 0 chr21 18906492 18906522 -26001048 + (TA)n Simple_repeat Simple_repeat 1 30 0 246 189 0 74 chr21 18906653 18906748 -26000822 + L1MC4 LINE L1 6616 6703 -1339 192 200 0 0 chr21 18906748 18906788 -26000782 + (TA)n Simple_repeat Simple_repeat 2 41 0 306 0 0 0 chr21 18906788 18906822 -26000748 + (CA)n Simple_repeat Simple_repeat 2 35 0 276 250 71 0 chr21 18906868 18906952 -26000618 + L1MC4 LINE L1 6614 6703 -1339 294 125 0 0 chr21 18906968 18907016 -26000554 + (TG)n Simple_repeat Simple_repeat 2 49 0 295 248 9 29 chr21 18907032 18907137 -26000433 + (TA)n Simple_repeat Simple_repeat 2 104 0 211 172 35 0 chr21 18907187 18907245 -26000325 + (TA)n Simple_repeat Simple_repeat 2 61 0 268 312 36 14 chr21 18907353 18907491 -26000079 + L1M4 LINE L1 4836 4976 -1170 220 54 71 18 chr21 18907498 18907554 -26000016 + (TATAA)n Simple_repeat Simple_repeat 1 59 0 271 164 41 57 chr21 18907603 18907725 -25999845 + (TATAA)n Simple_repeat Simple_repeat 2 121 0 192 158 0 0 chr21 18907915 18907953 -25999617 + GA-rich Low_complexity Low_complexity 1 38 0 242 202 309 0 chr21 18908071 18908155 -25999415 + L1M LINE L1 5317 5426 -738 1549 191 0 10 chr21 18908155 18908443 -25999127 + MER7A DNA MER2_type 64 346 0 1092 277 90 19 chr21 18908457 18909308 -25998262 - L1M4 LINE L1 -3625 3332 2480 1326 275 85 20 chr21 18909432 18909701 -25997869 - L1M4 LINE L1 -4491 2468 2218 183 42 0 0 chr21 18909701 18909725 -25997845 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 1326 275 85 20 chr21 18909725 18910368 -25997202 - L1M4 LINE L1 -4741 2218 1496 919 219 39 97 chr21 18910378 18910688 -25996882 + MLT2B1 LTR ERVL 1 292 -228 3139 142 24 30 chr21 18910695 18911229 -25996341 - MER61E LTR ERV1 -38 531 1 741 140 0 176 chr21 18911241 18911347 -25996223 + MLT2B1 LTR ERVL 362 421 -99 1254 154 121 77 chr21 18911347 18911776 -25995794 - LTR7 LTR ERV1 -2 448 1 741 140 0 176 chr21 18911776 18911862 -25995708 + MLT2B1 LTR ERVL 421 520 0 494 286 40 76 chr21 18911862 18912163 -25995407 - L1M4 LINE L1 -5365 1494 1205 297 100 0 0 chr21 18912319 18912369 -25995201 + (TG)n Simple_repeat Simple_repeat 1 50 0 252 272 167 43 chr21 18912727 18912838 -25994732 - L1M4 LINE L1 -5921 938 799 3658 30 0 0 chr21 18912838 18913272 -25994298 - L1PA4 LINE L1 -4 6151 5718 252 272 167 43 chr21 18913272 18913322 -25994248 - L1M4 LINE L1 -6060 799 757 1876 192 76 46 chr21 18913335 18913725 -25993845 - MER34 LTR ERV1 0 542 132 2329 73 0 0 chr21 18913725 18914025 -25993545 - AluY SINE Alu -11 300 1 1876 192 76 46 chr21 18914025 18914135 -25993435 - MER34 LTR ERV1 -410 132 27 270 310 20 30 chr21 18914389 18914489 -25993081 - MER20B DNA MER1_type -637 146 48 225 348 89 6 chr21 18914837 18914995 -25992575 - MIR SINE MIR -56 206 36 247 329 25 0 chr21 18917376 18917455 -25990115 - L1M4 LINE L1 -2065 4081 4001 269 196 0 0 chr21 18917764 18917815 -25989755 - L1MC4 LINE L1 -1344 6698 6648 503 184 29 0 chr21 18918009 18918112 -25989458 + L1MA9 LINE L1 6169 6274 -38 1969 132 3 3 chr21 18918316 18918605 -25988965 + AluSx SINE Alu 11 299 -13 21 0 0 0 chr21 18918689 18918710 -25988860 + AT_rich Low_complexity Low_complexity 1 21 0 306 169 0 0 chr21 18919010 18919075 -25988495 + (TG)n Simple_repeat Simple_repeat 2 66 0 697 180 16 0 chr21 18919092 18919220 -25988350 + FRAM SINE Alu 38 167 -9 240 314 51 29 chr21 18919993 18920130 -25987440 + L1MC/D LINE L1 5577 5716 -2092 279 157 0 0 chr21 18920396 18920447 -25987123 + (TA)n Simple_repeat Simple_repeat 2 52 0 393 302 120 40 chr21 18920503 18920728 -25986842 + MIR SINE MIR 20 262 0 249 304 0 0 chr21 18920826 18920895 -25986675 - L3 LINE CR1 -97 1480 1412 21 0 0 0 chr21 18920973 18920994 -25986576 + AT_rich Low_complexity Low_complexity 1 21 0 27 29 0 0 chr21 18921758 18921792 -25985778 + AT_rich Low_complexity Low_complexity 1 34 0 2054 101 0 4 chr21 18921869 18922222 -25985348 - AluSc SINE Alu 0 358 7 5969 169 18 8 chr21 18922540 18923608 -25983962 + Tigger1 DNA MER2_type 1 1079 -1339 17600 182 25 6 chr21 18923629 18924925 -25982645 + L1MA1 LINE L1 461 1730 -5835 198 0 0 0 chr21 18924925 18924947 -25982623 + (GA)n Simple_repeat Simple_repeat 1 22 0 17600 182 25 6 chr21 18924947 18928022 -25979548 + L1MA1 LINE L1 1730 4918 -2647 4226 129 3 1 chr21 18928017 18928765 -25978805 + L1MA1 LINE L1 6546 7295 -426 * 625 175 0 0 chr21 18928762 18928876 -25978694 + L1M1 LINE L1 5584 5697 -1868 * 452 103 17 1 chr21 18928878 18928948 -25978622 - L1MA1 LINE L1 -258 5893 5823 2693 102 10 0 chr21 18928951 18929351 -25978219 + L1MA1 LINE L1 5899 6302 0 7414 157 7 45 chr21 18929366 18930171 -25977399 + Tigger1 DNA MER2_type 1061 1895 -523 1296 214 23 45 chr21 18930171 18930479 -25977091 - AluJo SINE Alu -9 303 3 7414 157 7 45 chr21 18930479 18930879 -25976691 + Tigger1 DNA MER2_type 1895 2208 -210 2033 106 4 7 chr21 18930879 18931154 -25976416 - AluSc SINE Alu -15 294 21 7414 157 7 45 chr21 18931154 18931358 -25976212 + Tigger1 DNA MER2_type 2208 2418 0 294 217 0 0 chr21 18931628 18931697 -25975873 + (TA)n Simple_repeat Simple_repeat 2 70 0 1333 180 105 7 chr21 18931920 18932214 -25975356 + THE1C LTR MaLR 1 323 -52 6011 130 59 13 chr21 18932218 18933166 -25974404 + THE1C-int LTR MaLR 589 1580 0 1886 121 55 71 chr21 18933166 18933547 -25974023 + THE1C LTR MaLR 1 375 0 370 280 42 42 chr21 18933711 18933900 -25973670 + L1ME2 LINE L1 5454 5642 -520 22 35 0 0 chr21 18934219 18934248 -25973322 + AT_rich Low_complexity Low_complexity 1 29 0 27 87 0 0 chr21 18934398 18934467 -25973103 + AT_rich Low_complexity Low_complexity 1 69 0 30 27 0 0 chr21 18934508 18934545 -25973025 + AT_rich Low_complexity Low_complexity 1 37 0 265 188 25 0 chr21 18935089 18935169 -25972401 + (TA)n Simple_repeat Simple_repeat 2 83 0 3111 117 6 32 chr21 18935456 18935954 -25971616 + LTR22B LTR ERVK 5 489 -3 977 310 33 26 chr21 18937192 18937582 -25969988 + LTR40a LTR ERVL 3 395 -124 331 309 21 10 chr21 18937685 18937782 -25969788 - L2 LINE L2 -29 3284 3187 40 49 0 0 chr21 18937804 18937865 -25969705 + AT_rich Low_complexity Low_complexity 1 61 0 333 376 41 25 chr21 18938321 18938688 -25968882 - L2 LINE L2 -963 2351 1979 29 78 0 0 chr21 18938795 18938859 -25968711 + AT_rich Low_complexity Low_complexity 1 64 0 308 164 0 75 chr21 18941084 18941151 -25966419 - MSTA LTR MaLR -366 62 1 8591 178 37 6 chr21 18941151 18942753 -25964817 - MSTA-int LTR MaLR 0 1651 1 2383 141 69 12 chr21 18942753 18943158 -25964412 - MSTA LTR MaLR 0 428 1 2074 122 127 16 chr21 18943237 18943622 -25963948 - MSTA LTR MaLR 0 428 1 208 176 59 0 chr21 18943966 18944017 -25963553 + T-rich Low_complexity Low_complexity 3 56 0 381 94 0 0 chr21 18945681 18945734 -25961836 + U2 snRNA snRNA 1 53 -135 1519 210 7 0 chr21 18945962 18946257 -25961313 + AluJb SINE Alu 1 297 -15 322 23 0 0 chr21 18946786 18946830 -25960740 + L1PA2 LINE L1 6110 6153 -2 295 266 93 103 chr21 18947003 18947304 -25960266 + L1ME2 LINE L1 5789 6086 -78 608 175 39 0 chr21 18947320 18947423 -25960147 - FLAM_A SINE Alu -35 107 1 195 100 0 0 chr21 18947458 18947488 -25960082 + (CA)n Simple_repeat Simple_repeat 2 31 0 3128 178 41 64 chr21 18948989 18949696 -25957874 - LTR8 LTR ERV1 0 691 1 2268 107 3 3 chr21 18950777 18951086 -25956484 - AluSc SINE Alu 0 309 1 230 271 0 0 chr21 18951447 18951506 -25956064 + (TA)n Simple_repeat Simple_repeat 2 60 0 1126 228 20 64 chr21 18952934 18953325 -25954245 + MLT1A2 LTR MaLR 1 374 0 24 0 0 0 chr21 18953706 18953730 -25953840 + AT_rich Low_complexity Low_complexity 1 24 0 231 157 0 0 chr21 18953890 18953941 -25953629 + (TA)n Simple_repeat Simple_repeat 2 52 0 308 224 31 0 chr21 18953997 18954095 -25953475 + (TA)n Simple_repeat Simple_repeat 2 102 0 338 313 125 10 chr21 18954155 18954347 -25953223 + L1MC4 LINE L1 5734 5947 -2095 2552 137 83 5 chr21 18954460 18954904 -25952666 - MER31A LTR ERV1 -6 479 1 42 0 0 0 chr21 18954978 18955020 -25952550 + AT_rich Low_complexity Low_complexity 1 42 0 22 0 0 0 chr21 18955042 18955064 -25952506 + AT_rich Low_complexity Low_complexity 1 22 0 2029 115 11 0 chr21 18955231 18955517 -25952053 + AluSq SINE Alu 1 289 -24 189 0 0 0 chr21 18955527 18955548 -25952022 + (TAAA)n Simple_repeat Simple_repeat 3 23 0 197 136 74 12 chr21 18955593 18955674 -25951896 + (TA)n Simple_repeat Simple_repeat 1 86 0 1651 218 6 3 chr21 18956028 18956359 -25951211 - MLT1A1 LTR MaLR 0 365 34 757 228 0 5 chr21 18956614 18956798 -25950772 - L1M4 LINE L1 -3275 2871 2689 2710 167 8 41 chr21 18958009 18958597 -25948973 + L1MB3 LINE L1 5606 6174 -9 2496 39 3 29 chr21 18959153 18959465 -25948105 + AluY SINE Alu 1 304 -7 1302 192 0 25 chr21 18960458 18960703 -25946867 + AluJo SINE Alu 12 250 -62 2128 54 11 4 chr21 18960829 18961107 -25946463 + L1PA7 LINE L1 5874 6153 -1 222 309 32 56 chr21 18962200 18962326 -25945244 + MIR SINE MIR 20 142 -66 22 0 0 0 chr21 18962966 18962988 -25944582 + AT_rich Low_complexity Low_complexity 1 22 0 7879 198 99 23 chr21 18963648 18965280 -25942290 + MER52A LTR ERV1 1 1755 0 185 238 191 0 chr21 18965436 18965499 -25942071 + MIR SINE MIR 120 194 -68 10573 160 144 7 chr21 18965744 18967870 -25939700 + Tigger1 DNA MER2_type 2 2418 0 4240 178 15 26 chr21 18967872 18968719 -25938851 + L1MC1 LINE L1 5445 6282 -51 1913 56 0 0 chr21 18969227 18969459 -25938111 - AluSc SINE Alu 0 309 78 483 145 0 0 chr21 18969459 18969535 -25938035 + AluS SINE Alu 2 77 -232 186 404 0 20 chr21 18969537 18969636 -25937934 + L3 LINE CR1 1455 1551 -26 935 167 49 20 chr21 18969922 18970126 -25937444 - L1MA4 LINE L1 -7 6293 6084 250 111 0 0 chr21 18970791 18970827 -25936743 - MIR SINE MIR -109 153 118 944 301 116 33 chr21 18972977 18973458 -25934112 - MLT1G1 LTR MaLR -2 593 73 30 27 0 0 chr21 18973683 18973720 -25933850 + AT_rich Low_complexity Low_complexity 1 37 0 23 54 0 0 chr21 18973795 18973832 -25933738 + AT_rich Low_complexity Low_complexity 1 37 0 32 43 0 0 chr21 18973915 18973961 -25933609 + AT_rich Low_complexity Low_complexity 1 46 0 2052 120 17 3 chr21 18974600 18974900 -25932670 - AluSc SINE Alu -5 304 1 190 354 80 9 chr21 18975074 18975187 -25932383 - MIR SINE MIR -106 156 36 252 116 0 87 chr21 18975389 18975458 -25932112 + (TAAAA)n Simple_repeat Simple_repeat 5 67 0 22 0 0 0 chr21 18975464 18975486 -25932084 + AT_rich Low_complexity Low_complexity 1 22 0 21 36 0 0 chr21 18975570 18975598 -25931972 + AT_rich Low_complexity Low_complexity 1 28 0 889 229 59 81 chr21 18975658 18976029 -25931541 - MLT1A1 LTR MaLR -2 363 1 222 189 0 0 chr21 18976035 18976072 -25931498 + (TG)n Simple_repeat Simple_repeat 2 38 0 401 284 6 0 chr21 18976082 18976251 -25931319 + (TA)n Simple_repeat Simple_repeat 1 170 0 1814 131 36 0 chr21 18976300 18976605 -25930965 + AluSq SINE Alu 1 315 0 328 286 45 0 chr21 18976669 18976781 -25930789 - MER94 DNA DNA -13 121 5 281 326 0 22 chr21 18977408 18977500 -25930070 - MLT2E LTR ERVL -507 121 32 342 328 123 23 chr21 18977878 18978180 -25929390 + L1MEd LINE L1 924 1255 -4864 21 95 0 0 chr21 18979210 18979273 -25928297 + AT_rich Low_complexity Low_complexity 1 63 0 799 209 110 3 chr21 18979946 18980375 -25927195 - MER110A LTR ERV1 0 468 1 22 35 0 0 chr21 18980559 18980588 -25926982 + AT_rich Low_complexity Low_complexity 1 29 0 1300 140 31 19 chr21 18981065 18981350 -25926220 + MER61C LTR ERV1 1 378 -56 259 128 0 21 chr21 18981585 18981632 -25925938 + MER61B LTR ERV1 380 425 0 1890 192 87 60 chr21 18982532 18983151 -25924419 - MER92B LTR ERV1 0 636 1 324 285 19 41 chr21 18983632 18983771 -25923799 + MIR SINE MIR 29 166 -64 2957 190 14 17 chr21 18983825 18984414 -25923156 + L1MA6 LINE L1 3907 4493 -1653 * 4638 170 14 23 chr21 18984411 18985290 -25922280 + L1MA6 LINE L1 5385 6257 -43 2053 118 0 17 chr21 18985290 18985587 -25921983 - AluSx SINE Alu -16 296 5 4638 170 14 23 chr21 18985587 18985623 -25921947 + L1MA6 LINE L1 6257 6292 -8 247 208 0 0 chr21 18987130 18987183 -25920387 - L1PB4 LINE L1 -2 6154 6102 284 354 49 21 chr21 18987326 18987470 -25920100 - MIR SINE MIR -112 150 3 666 270 80 31 chr21 18987471 18987760 -25919810 - MER102b DNA MER1_type 0 341 39 1939 107 48 0 chr21 18988487 18988776 -25918794 + AluSc SINE Alu 7 309 0 220 372 117 7 chr21 18989349 18989494 -25918076 + MIR SINE MIR 21 181 -81 27 49 0 0 chr21 18990058 18990099 -25917471 + AT_rich Low_complexity Low_complexity 1 41 0 207 171 0 0 chr21 18990258 18990293 -25917277 + (TTCA)n Simple_repeat Simple_repeat 1 35 0 1957 174 63 27 chr21 18990508 18990921 -25916649 + MSTA LTR MaLR 1 428 0 7327 187 50 27 chr21 18990921 18992536 -25915034 + MSTA-int LTR MaLR 1 1651 0 2106 191 62 2 chr21 18992536 18992940 -25914630 + MSTA LTR MaLR 1 428 0 462 230 80 19 chr21 18992987 18993152 -25914418 - MER58B DNA MER1_type -8 333 3 711 293 77 5 chr21 18993229 18993451 -25914119 - MIR SINE MIR -7 255 18 24 0 0 0 chr21 18993629 18993653 -25913917 + AT_rich Low_complexity Low_complexity 1 24 0 25 31 0 0 chr21 18994153 18994185 -25913385 + AT_rich Low_complexity Low_complexity 1 32 0 359 291 109 11 chr21 18995855 18996030 -25911540 - MIR SINE MIR -1 261 70 489 29 0 0 chr21 18998031 18998101 -25909469 - AluY SINE Alu 0 310 241 1348 211 33 21 chr21 18998504 18998841 -25908729 + L1MA9 LINE L1 5970 6310 -2 1141 299 82 23 chr21 18999309 19000006 -25907564 + L1ME3A LINE L1 3899 4553 -1593 321 68 0 0 chr21 19000006 19000050 -25907520 + (TG)n Simple_repeat Simple_repeat 2 45 0 1141 299 82 23 chr21 19000050 19000070 -25907500 + L1ME3A LINE L1 4553 4570 -1576 2202 82 34 3 chr21 19000070 19000361 -25907209 - AluSq SINE Alu -11 302 3 1141 299 82 23 chr21 19000361 19000469 -25907101 + L1ME3A LINE L1 4570 4774 -1372 659 265 64 91 chr21 19000602 19001536 -25906034 + L1ME3A LINE L1 4948 5852 -318 1059 199 43 115 chr21 19001536 19001928 -25905642 + MLT1A1 LTR MaLR 1 364 -1 659 265 64 91 chr21 19001928 19002032 -25905538 + L1ME3A LINE L1 5852 5957 -213 303 248 92 37 chr21 19002051 19002160 -25905410 + L1ME3A LINE L1 6032 6146 -24 1746 177 47 56 chr21 19002189 19002246 -25905324 + MSTB LTR MaLR 1 57 -369 2370 77 0 3 chr21 19002246 19002556 -25905014 + AluY SINE Alu 1 309 -2 1746 177 47 56 chr21 19002556 19002928 -25904642 + MSTB LTR MaLR 57 426 0 30 59 0 0 chr21 19003038 19003089 -25904481 + AT_rich Low_complexity Low_complexity 1 51 0 3580 164 103 17 chr21 19003945 19004455 -25903115 + L1MC2 LINE L1 5321 5786 -558 2023 152 0 7 chr21 19004455 19004764 -25902806 + AluSx SINE Alu 1 307 -5 3580 164 103 17 chr21 19004764 19004942 -25902628 + L1MC2 LINE L1 5786 5947 -397 468 0 0 0 chr21 19004942 19004994 -25902576 + (TA)n Simple_repeat Simple_repeat 2 53 0 3580 164 103 17 chr21 19004994 19005084 -25902486 + L1MC2 LINE L1 5947 6167 -177 499 208 75 81 chr21 19005085 19005258 -25902312 + MLT1B LTR MaLR 1 172 -218 413 133 26 9 chr21 19005290 19005403 -25902167 + (CA)n Simple_repeat Simple_repeat 2 116 0 309 125 0 0 chr21 19005425 19005481 -25902089 + (TC)n Simple_repeat Simple_repeat 1 56 0 588 255 25 12 chr21 19005495 19005656 -25901914 + MLT1B LTR MaLR 201 363 -27 612 239 55 0 chr21 19005667 19005830 -25901740 + L1MC2 LINE L1 6165 6336 -8 214 382 20 20 chr21 19005957 19006059 -25901511 + MIR SINE MIR 38 139 -69 198 71 0 0 chr21 19006270 19006298 -25901272 + (TG)n Simple_repeat Simple_repeat 1 28 0 185 0 40 0 chr21 19006297 19006322 -25901248 + (GA)n Simple_repeat Simple_repeat 1 26 0 * 1593 191 4 4 chr21 19007417 19007695 -25899875 + AluJb SINE Alu 2 279 -33 298 329 119 42 chr21 19007961 19008173 -25899397 - MIR SINE MIR -3 205 15 266 269 27 54 chr21 19008608 19008750 -25898820 - L2 LINE L2 -20 3293 3154 1844 149 58 25 chr21 19008750 19009113 -25898457 - THE1C LTR MaLR 0 375 1 1979 207 14 29 chr21 19009424 19009844 -25897726 + MLT2D LTR ERVL 1 414 0 1498 151 82 55 chr21 19010075 19010440 -25897130 + THE1C LTR MaLR 1 375 0 1795 208 164 9 chr21 19010827 19011278 -25896292 + L1MCa LINE L1 18 538 -5888 502 331 60 44 chr21 19011655 19012039 -25895531 + L1MCc LINE L1 786 1175 -5248 21 36 0 0 chr21 19012039 19012067 -25895503 + AT_rich Low_complexity Low_complexity 1 28 0 863 277 51 30 chr21 19012167 19012572 -25894998 + L1MCc LINE L1 1211 1606 -5076 2530 65 0 0 chr21 19012572 19012881 -25894689 + AluY SINE Alu 1 309 -2 863 277 51 30 chr21 19012881 19012913 -25894657 + L1MCc LINE L1 1606 1636 -5046 261 0 0 0 chr21 19012913 19012942 -25894628 + (TG)n Simple_repeat Simple_repeat 2 30 0 863 277 51 30 chr21 19012942 19013072 -25894498 + L1MCc LINE L1 1636 1795 -4887 390 274 24 0 chr21 19013132 19013232 -25894338 + L1MCc LINE L1 2889 2996 -4126 1471 205 16 19 chr21 19013232 19013539 -25894031 + AluJo SINE Alu 1 306 -6 390 274 24 0 chr21 19013539 19013602 -25893968 + L1MCc LINE L1 2996 3056 -4066 1278 290 83 28 chr21 19013694 19014198 -25893372 + L1ME1 LINE L1 8 539 -6003 3374 198 35 21 chr21 19014199 19015051 -25892519 + L1ME1 LINE L1 768 1631 -4911 * 4226 226 89 53 chr21 19015050 19015483 -25892087 + L1ME1 LINE L1 4246 4662 -2002 282 56 0 0 chr21 19015483 19015519 -25892051 + (CA)n Simple_repeat Simple_repeat 2 37 0 4226 226 89 53 chr21 19015519 19016217 -25891353 + L1ME1 LINE L1 4662 5333 -1331 1816 168 45 25 chr21 19016217 19016574 -25890996 + THE1B LTR MaLR 1 364 0 9886 108 31 43 chr21 19016575 19018172 -25889398 + THE1C-int LTR MaLR 2 1580 0 2008 160 53 3 chr21 19018172 19018529 -25889041 + THE1C LTR MaLR 1 375 0 4226 226 89 53 chr21 19018529 19019166 -25888404 + L1ME1 LINE L1 5333 5946 -718 189 0 0 0 chr21 19019166 19019187 -25888383 + (TA)n Simple_repeat Simple_repeat 2 22 0 4226 226 89 53 chr21 19019187 19019751 -25887819 + L1ME1 LINE L1 5946 6659 -5 225 0 0 0 chr21 19019787 19019812 -25887758 + (CCA)n Simple_repeat Simple_repeat 2 26 0 1339 193 88 154 chr21 19019837 19020358 -25887212 + MER50 LTR ERV1 14 469 -265 2302 52 3 39 chr21 19020358 19020665 -25886905 - AluY SINE Alu -15 296 1 1339 193 88 154 chr21 19020665 19020915 -25886655 + MER50 LTR ERV1 469 734 0 281 355 12 47 chr21 19020981 19021153 -25886417 + L2 LINE L2 2243 2408 -906 232 224 20 0 chr21 19021243 19021292 -25886278 + L2 LINE L2 3264 3313 0 968 211 68 0 chr21 19022428 19022679 -25884891 - L1MA4 LINE L1 -6 6294 6027 684 192 0 8 chr21 19023030 19023150 -25884420 + FLAM_C SINE Alu 12 130 -13 656 284 172 21 chr21 19023182 19023664 -25883906 - HsTC2 DNA Tc2 -64 1834 1280 26 0 0 0 chr21 19023664 19023690 -25883880 + AT_rich Low_complexity Low_complexity 1 26 0 273 316 0 0 chr21 19023690 19023766 -25883804 - HsTC2 DNA Tc2 -1764 134 59 2146 119 3 0 chr21 19023767 19024060 -25883510 + AluSp SINE Alu 1 294 -19 359 127 0 0 chr21 19024618 19024673 -25882897 - MADE1 DNA Mariner 0 80 26 2037 217 57 6 chr21 19025002 19025153 -25882417 + L1MB1 LINE L1 5677 5819 -370 1853 128 0 15 chr21 19025153 19025427 -25882143 + AluSx SINE Alu 38 307 -5 2037 217 57 6 chr21 19025427 19025745 -25881825 + L1MB1 LINE L1 5819 6170 -19 2430 46 0 33 chr21 19027668 19027972 -25879598 - AluY SINE Alu -6 305 12 251 175 16 32 chr21 19028379 19028442 -25879128 + L1ME4a LINE L1 5982 6043 -78 25 83 0 0 chr21 19028454 19028514 -25879056 + AT_rich Low_complexity Low_complexity 1 60 0 202 352 28 0 chr21 19029004 19029075 -25878495 - MIR SINE MIR -161 101 29 2059 122 0 33 chr21 19030966 19031270 -25876300 + AluSq SINE Alu 1 294 -19 2204 183 45 2 chr21 19031396 19031861 -25875709 - MER31A LTR ERV1 0 485 1 599 155 0 46 chr21 19032537 19032711 -25874859 + (TA)n Simple_repeat Simple_repeat 2 167 0 198 0 0 0 chr21 19032761 19032783 -25874787 + (TA)n Simple_repeat Simple_repeat 2 23 0 279 349 59 98 chr21 19033544 19033931 -25873639 - L2 LINE L2 -5 3267 2896 229 385 113 29 chr21 19033958 19034340 -25873230 - L2 LINE L2 -576 2738 2325 704 206 14 21 chr21 19035485 19035626 -25871944 - MER68 LTR ERV1 -8 554 415 910 219 17 95 chr21 19035630 19036065 -25871505 + MLT1B LTR MaLR 4 390 0 2333 169 38 5 chr21 19036072 19036469 -25871101 - MER68 LTR ERV1 -152 410 1 2231 92 0 10 chr21 19037106 19037401 -25870169 + AluY SINE Alu 1 292 -19 201 213 0 0 chr21 19037932 19037979 -25869591 + (TA)n Simple_repeat Simple_repeat 1 47 0 192 40 0 0 chr21 19038571 19038596 -25868974 + (TA)n Simple_repeat Simple_repeat 2 26 0 * 225 108 0 0 chr21 19038595 19038632 -25868938 + (CA)n Simple_repeat Simple_repeat 2 38 0 1156 257 107 113 chr21 19039207 19040001 -25867569 + MER21B LTR ERV1 13 801 -62 282 315 116 13 chr21 19040289 19040521 -25867049 - L1M4 LINE L1 -855 5291 5036 818 273 196 48 chr21 19040678 19042315 -25865255 - L1M4 LINE L1 -1098 5048 3055 2121 131 0 3 chr21 19042315 19042627 -25864943 - AluSq SINE Alu -2 311 1 818 273 196 48 chr21 19042627 19043004 -25864566 - L1M4 LINE L1 -3091 3055 2735 349 272 38 42 chr21 19043015 19043276 -25864294 - L1M4 LINE L1 -3324 2822 2563 236 273 23 45 chr21 19043288 19043376 -25864194 + MER5B DNA MER1_type 87 172 -6 330 310 103 0 chr21 19043860 19043976 -25863594 + Charlie8 DNA MER1_type 12 139 -2278 251 300 147 37 chr21 19046592 19046865 -25860705 - L2 LINE L2 -376 2938 2636 1751 240 25 16 chr21 19047871 19048313 -25859257 - LTR40a LTR ERVL -3 516 71 980 255 58 0 chr21 19048367 19048657 -25858913 - HERVL40 LTR ERVL -12 5518 2823 364 307 24 12 chr21 19048584 19048750 -25858820 - MER68-int LTR ERV1 -316 6485 6318 * 613 299 87 10 chr21 19049498 19049705 -25857865 - HERVL40 LTR ERVL -1044 4486 4264 2542 283 74 16 chr21 19049825 19050676 -25856894 - HERVL40 LTR ERVL -1415 4115 3216 664 207 14 0 chr21 19050677 19050817 -25856753 - LTR40a LTR ERVL -317 202 61 2229 82 11 0 chr21 19051075 19051378 -25856192 + AluY SINE Alu 1 306 0 1419 206 69 53 chr21 19051843 19052222 -25855348 - MLT1B LTR MaLR -3 387 3 2375 87 0 3 chr21 19052228 19052540 -25855030 - AluY SINE Alu 0 311 1 2062 246 46 6 chr21 19053028 19053549 -25854021 - REP3 LTR ERV -20 542 1 1120 229 156 49 chr21 19055240 19055690 -25851880 - MLT1D LTR MaLR -1 504 7 1135 359 29 26 chr21 19056140 19057078 -25850492 + ERVL LTR ERVL 3686 4598 -887 2316 90 33 41 chr21 19057138 19057505 -25850065 + THE1B LTR MaLR 1 364 0 481 347 38 8 chr21 19058284 19058546 -25849024 + LTR16A LTR ERVL 1 270 -180 25 0 0 0 chr21 19059031 19059056 -25848514 + AT_rich Low_complexity Low_complexity 1 25 0 21 0 0 0 chr21 19059382 19059403 -25848167 + AT_rich Low_complexity Low_complexity 1 21 0 302 0 0 26 chr21 19059785 19059824 -25847746 + (TTTG)n Simple_repeat Simple_repeat 1 38 0 435 225 83 17 chr21 19059905 19060025 -25847545 + LTR50 LTR ERVL 1 128 -667 774 256 47 38 chr21 19060031 19060348 -25847222 + L1ME2 LINE L1 5844 6163 -1 390 273 36 30 chr21 19060398 19060424 -25847146 + L1ME3A LINE L1 5935 5959 -211 231 61 0 0 chr21 19060424 19060457 -25847113 + (TTTG)n Simple_repeat Simple_repeat 1 33 0 2022 103 0 25 chr21 19060464 19060745 -25846825 - AluSx SINE Alu -38 274 1 390 273 36 30 chr21 19060745 19060875 -25846695 + L1ME3A LINE L1 5964 6100 -70 316 0 45 0 chr21 19060877 19060921 -25846649 + (TA)n Simple_repeat Simple_repeat 2 47 0 319 187 22 14 chr21 19062675 19062814 -25844756 + (TA)n Simple_repeat Simple_repeat 1 140 0 386 361 84 0 chr21 19063316 19063507 -25844063 - MIR SINE MIR -10 252 46 29 60 0 0 chr21 19064933 19064983 -25842587 + AT_rich Low_complexity Low_complexity 1 50 0 2047 123 0 35 chr21 19065685 19065995 -25841575 - AluSg SINE Alu -11 299 1 530 287 44 19 chr21 19066497 19066673 -25840897 + MER58B DNA MER1_type 36 341 0 2332 104 8 8 chr21 19068538 19068895 -25838675 + L1PA13 LINE L1 5799 6155 -8 268 197 273 0 chr21 19069196 19069262 -25838308 - FLAM_A SINE Alu -5 128 45 390 42 0 0 chr21 19069336 19069384 -25838186 + (CA)n Simple_repeat Simple_repeat 2 49 0 1245 198 31 38 chr21 19070096 19070384 -25837186 + AluJo SINE Alu 1 286 -26 26 30 0 0 chr21 19070440 19070473 -25837097 + AT_rich Low_complexity Low_complexity 1 33 0 40 49 0 0 chr21 19071253 19071314 -25836256 + AT_rich Low_complexity Low_complexity 1 61 0 1109 43 0 0 chr21 19071658 19071796 -25835774 - L1PA5 LINE L1 0 6154 6017 238 357 33 93 chr21 19072506 19072806 -25834764 - L2 LINE L2 -44 3228 2947 1343 264 112 37 chr21 19073190 19073719 -25833851 + MLT1F1 LTR MaLR 3 567 0 360 262 138 7 chr21 19074143 19074288 -25833282 - L2 LINE L2 -942 2372 2209 209 186 0 0 chr21 19076405 19076448 -25831122 + GA-rich Low_complexity Low_complexity 2 44 0 375 23 0 0 chr21 19076451 19076495 -25831075 + (CA)n Simple_repeat Simple_repeat 2 45 0 21 0 0 0 chr21 19076805 19076826 -25830744 + AT_rich Low_complexity Low_complexity 1 21 0 2072 112 0 7 chr21 19077001 19077296 -25830274 - AluSg SINE Alu -17 293 1 209 250 18 0 chr21 19077619 19077675 -25829895 + (TA)n Simple_repeat Simple_repeat 1 57 0 207 152 0 0 chr21 19077705 19077751 -25829819 + (CA)n Simple_repeat Simple_repeat 1 46 0 23 33 0 0 chr21 19078088 19078118 -25829452 + AT_rich Low_complexity Low_complexity 1 30 0 218 321 5 92 chr21 19078764 19078948 -25828622 - L2 LINE L2 -188 3084 2917 440 337 25 10 chr21 19079414 19079610 -25827960 + L2 LINE L2 2378 2576 -738 335 277 54 9 chr21 19079734 19079846 -25827724 + L1MCc LINE L1 13 129 -6294 668 217 96 29 chr21 19079846 19080086 -25827484 + L1MCc LINE L1 1277 1532 -4891 741 269 97 38 chr21 19080382 19080469 -25827101 + L1MCc LINE L1 2492 2572 -4369 912 236 4 31 chr21 19080469 19080694 -25826876 + MER20 DNA MER1_type 1 219 0 741 269 97 38 chr21 19080694 19081357 -25826213 + L1MCc LINE L1 2572 3215 -3726 2024 290 52 24 chr21 19081384 19082527 -25825043 + L1MCc LINE L1 3286 4461 -2480 258 213 0 156 chr21 19082535 19082676 -25824894 + L1MCc LINE L1 4800 4918 -2023 * 689 222 82 35 chr21 19082659 19082916 -25824654 + L1MCc LINE L1 5230 5498 -1443 569 270 18 16 chr21 19082927 19083193 -25824377 + L1MCc LINE L1 5964 6233 -743 953 276 41 22 chr21 19083200 19083566 -25824004 - L1M4 LINE L1 -1072 5074 4702 433 270 11 86 chr21 19083566 19083740 -25823830 + L2 LINE L2 3148 3308 -5 813 241 89 66 chr21 19083867 19084322 -25823248 - Charlie4a DNA MER1_type -1458 503 35 12578 158 34 22 chr21 19084322 19084559 -25823011 - Tigger1 DNA MER2_type 0 2418 2185 210 37 0 0 chr21 19084559 19084586 -25822984 + (TTG)n Simple_repeat Simple_repeat 1 27 0 12578 158 34 22 chr21 19084586 19086736 -25820834 - Tigger1 DNA MER2_type -233 2185 2 813 241 89 66 chr21 19086736 19086752 -25820818 - Charlie4a DNA MER1_type -1926 35 21 1604 201 0 7 chr21 19087683 19087976 -25819594 + AluJo SINE Alu 11 301 -11 1786 149 3 13 chr21 19088935 19089236 -25818334 - AluSx SINE Alu -14 298 1 2198 125 0 0 chr21 19089981 19090277 -25817293 - AluSx SINE Alu -16 296 1 3367 90 14 34 chr21 19090313 19090814 -25816756 + L1PA8A LINE L1 5629 6119 -12 2091 104 34 0 chr21 19090820 19091117 -25816453 + AluY SINE Alu 1 307 -4 501 343 107 66 chr21 19091117 19091648 -25815922 - L2 LINE L2 -2704 610 58 23 33 0 0 chr21 19092176 19092206 -25815364 + AT_rich Low_complexity Low_complexity 1 30 0 23 54 0 0 chr21 19092495 19092532 -25815038 + AT_rich Low_complexity Low_complexity 1 37 0 21 36 0 0 chr21 19093654 19093682 -25813888 + AT_rich Low_complexity Low_complexity 1 28 0 2129 161 46 15 chr21 19094039 19094430 -25813140 - MER61D LTR ERV1 0 501 99 20487 123 27 15 chr21 19094445 19094706 -25812864 - MER61D-int LTR ERV1 0 5217 4961 2022 122 0 14 chr21 19094706 19095002 -25812568 + AluSx SINE Alu 5 296 -16 20487 123 27 15 chr21 19095002 19097946 -25809624 - MER61D-int LTR ERV1 -256 4961 1972 2635 153 2 13 chr21 19097925 19098464 -25809106 - MER61D-int LTR ERV1 -3574 2012 1214 * 1157 109 11 11 chr21 19098465 19098640 -25808930 - MER61D LTR ERV1 -184 317 143 2452 173 106 98 chr21 19098640 19099637 -25807933 - MER61D-int LTR ERV1 -4060 1157 153 297 103 0 17 chr21 19099647 19099705 -25807865 + Alu SINE Alu 1 57 -243 3533 129 9 9 chr21 19099705 19100263 -25807307 - MER61-int LTR ERV1 -2066 3151 2594 1121 82 0 13 chr21 19100267 19100425 -25807145 + AluSc SINE Alu 70 225 -84 1728 187 128 40 chr21 19100425 19100927 -25806643 + LTR10A LTR ERV1 3 548 -61 574 49 12 0 chr21 19100940 19101022 -25806548 + AluSc SINE Alu 220 302 -7 32 67 0 0 chr21 19101128 19101188 -25806382 + AT_rich Low_complexity Low_complexity 1 60 0 283 292 62 90 chr21 19102113 19102401 -25805169 + MLT1I LTR MaLR 102 381 -28 958 212 99 75 chr21 19105812 19105922 -25801648 + MER31B LTR ERV1 3 109 -357 1743 180 3 7 chr21 19105922 19106217 -25801353 + AluJo SINE Alu 1 294 -18 958 212 99 75 chr21 19106217 19106559 -25801011 + MER31B LTR ERV1 109 466 0 1116 159 84 1 chr21 19106639 19107041 -25800529 - MER31A LTR ERV1 -6 479 1 2642 199 81 32 chr21 19107324 19108063 -25799507 + LTR48 LTR ERV1 7 699 -8 28 29 0 0 chr21 19109330 19109365 -25798205 + AT_rich Low_complexity Low_complexity 1 35 0 256 315 44 3 chr21 19109461 19109625 -25797945 - MER110 LTR ERV1 -2 466 329 1932 208 88 11 chr21 19109627 19110094 -25797476 + MER67C LTR ERV1 3 505 -205 1131 165 128 4 chr21 19110095 19110338 -25797232 + MER47A DNA MER2_type 2 274 -92 * 3637 156 99 3 chr21 19110331 19110974 -25796596 + MER50 LTR ERV1 7 711 -23 538 189 11 0 chr21 19110974 19111069 -25796501 + MER47A DNA MER2_type 271 366 0 * 1048 171 9 23 chr21 19111069 19111233 -25796337 + MER67C LTR ERV1 504 666 -44 2387 85 3 0 chr21 19111233 19111538 -25796032 + AluY SINE Alu 1 306 -5 1048 171 9 23 chr21 19111538 19111580 -25795990 + MER67C LTR ERV1 666 707 -3 245 311 0 14 chr21 19111584 19111658 -25795912 - MER110 LTR ERV1 -192 299 227 2353 192 164 28 chr21 19111814 19112501 -25795069 + LTR48 LTR ERV1 7 787 0 381 244 38 30 chr21 19112501 19112628 -25794942 - MER110A LTR ERV1 -339 129 2 3900 170 30 36 chr21 19112695 19113482 -25794088 + LTR39 LTR ERV1 1 783 0 225 259 74 0 chr21 19113875 19113956 -25793614 - MLT1L LTR MaLR -76 539 453 183 42 0 0 chr21 19114605 19114629 -25792941 + (TA)n Simple_repeat Simple_repeat 2 25 0 5379 100 1 3 chr21 19114788 19115549 -25792021 + L1PA11 LINE L1 5413 6172 -2 1601 165 19 0 chr21 19115810 19116070 -25791500 + AluJo SINE Alu 23 287 -25 22 0 0 0 chr21 19116148 19116170 -25791400 + AT_rich Low_complexity Low_complexity 1 22 0 557 332 37 0 chr21 19116197 19116387 -25791183 - MIR SINE MIR -38 224 28 2047 109 3 3 chr21 19116852 19117183 -25790387 - AluSc SINE Alu 0 331 1 1338 157 39 26 chr21 19117650 19117879 -25789691 + MER1B DNA MER1_type 59 290 -49 1775 129 40 18 chr21 19118739 19119017 -25788553 + THE1B LTR MaLR 1 284 -80 1369 68 0 0 chr21 19119881 19120058 -25787512 + AluY SINE Alu 135 311 0 21 0 0 0 chr21 19120527 19120548 -25787022 + AT_rich Low_complexity Low_complexity 1 21 0 501 270 76 38 chr21 19120670 19120855 -25786715 + MER63A DNA MER1_type 1 192 -18 553 232 83 18 chr21 19121016 19121184 -25786386 - MER58A DNA MER1_type -1 223 45 536 168 0 9 chr21 19124420 19124527 -25783043 + FLAM_C SINE Alu 36 141 -2 526 237 96 40 chr21 19124529 19124706 -25782864 - MLT1L LTR MaLR -87 528 342 1780 154 18 7 chr21 19125263 19125573 -25781997 + AluSx SINE Alu 1 313 0 453 333 108 0 chr21 19125723 19125909 -25781661 + MIR SINE MIR 9 214 -48 1889 127 67 51 chr21 19127148 19127479 -25780091 + MER1B DNA MER1_type 1 336 -1 26 50 0 0 chr21 19127760 19127800 -25779770 + AT_rich Low_complexity Low_complexity 1 40 0 602 292 59 50 chr21 19128060 19128584 -25778986 + Charlie7 DNA MER1_type 1576 2104 -508 29 78 0 0 chr21 19129066 19129130 -25778440 + AT_rich Low_complexity Low_complexity 1 64 0 258 167 154 0 chr21 19129139 19129217 -25778353 - MLT1L LTR MaLR -8 607 518 1072 231 166 92 chr21 19129525 19130134 -25777436 - MLT1E1 LTR MaLR 0 654 1 264 256 126 82 chr21 19131814 19132021 -25775549 - L3b LINE CR1 -4 1579 1364 848 214 24 0 chr21 19133776 19133944 -25773626 - MLT1A1 LTR MaLR 0 365 194 242 301 131 104 chr21 19134324 19134583 -25772987 - MLT1J2 LTR MaLR -132 318 53 793 289 19 27 chr21 19134919 19135182 -25772388 - MIR SINE MIR 0 262 2 2566 30 0 3 chr21 19135351 19135652 -25771918 - AluY SINE Alu -11 300 1 242 299 0 15 chr21 19135692 19135759 -25771811 + L2 LINE L2 3229 3294 -19 35 0 0 0 chr21 19135949 19135984 -25771586 + AT_rich Low_complexity Low_complexity 1 35 0 4870 167 9 16 chr21 19136003 19136943 -25770627 - L1PB4 LINE L1 -1 6155 5222 185 309 15 15 chr21 19138989 19139057 -25768513 + L3 LINE CR1 986 1053 -524 5084 167 14 3 chr21 19139449 19140364 -25767206 - L1MA4 LINE L1 0 6300 5376 184 220 169 0 chr21 19140571 19140630 -25766940 + L2 LINE L2 3192 3260 -12 24 0 0 0 chr21 19140714 19140738 -25766832 + AT_rich Low_complexity Low_complexity 1 24 0 573 121 12 0 chr21 19142682 19142765 -25764805 - AluJb SINE Alu -17 295 212 1561 254 79 23 chr21 19142772 19143381 -25764189 - LTR48B LTR ERV1 -1 643 1 271 170 0 179 chr21 19143381 19143487 -25764083 + MLT1C LTR MaLR 61 147 -320 * 911 207 10 29 chr21 19143485 19143693 -25763877 + MLT1C LTR MaLR 264 467 0 1921 156 27 30 chr21 19143724 19144089 -25763481 - THE1C LTR MaLR 0 375 12 2511 104 16 19 chr21 19144655 19145031 -25762539 - THE1C LTR MaLR 0 375 1 195 220 0 0 chr21 19145037 19145087 -25762483 + CT-rich Low_complexity Low_complexity 3 52 0 324 0 0 0 chr21 19145134 19145170 -25762400 + (TA)n Simple_repeat Simple_repeat 2 37 0 2597 40 0 3 chr21 19145170 19145470 -25762100 - AluY SINE Alu -12 299 1 2201 136 30 22 chr21 19145742 19146103 -25761467 - THE1B LTR MaLR 0 364 1 439 200 0 0 chr21 19149639 19149724 -25757846 + MER67D LTR ERV1 1 85 -429 676 241 70 0 chr21 19149878 19150065 -25757505 + MER67D LTR ERV1 310 509 -5 22 56 0 0 chr21 19151106 19151142 -25756428 + AT_rich Low_complexity Low_complexity 1 36 0 229 255 0 0 chr21 19151143 19151190 -25756380 - MIR SINE MIR -208 54 8 2386 43 0 0 chr21 19151243 19151562 -25756008 + AluY SINE Alu 5 323 0 261 337 109 27 chr21 19151705 19151889 -25755681 - MIR SINE MIR 0 262 64 229 136 30 0 chr21 19152139 19152205 -25755365 + (CA)n Simple_repeat Simple_repeat 1 68 0 190 156 31 0 chr21 19152237 19152301 -25755269 + (CA)n Simple_repeat Simple_repeat 1 66 0 190 156 31 0 chr21 19152333 19152397 -25755173 + (CA)n Simple_repeat Simple_repeat 1 66 0 1391 102 68 34 chr21 19153331 19153567 -25754003 - L1PA14 LINE L1 -6 6155 5912 1725 110 8 0 chr21 19154360 19154596 -25752974 + AluSq SINE Alu 1 238 -75 469 186 23 0 chr21 19155333 19155419 -25752151 + FLAM_A SINE Alu 37 124 -18 1059 309 36 18 chr21 19155481 19155872 -25751698 - LTR16C LTR ERVL -4 487 90 244 286 48 82 chr21 19156019 19156200 -25751370 - L1MC/D LINE L1 -2260 5548 5379 2494 88 0 0 chr21 19156200 19156508 -25751062 - AluSp SINE Alu -5 308 1 244 286 48 82 chr21 19156508 19156620 -25750950 - L1MC/D LINE L1 -2429 5379 5265 5006 153 36 39 chr21 19156871 19157161 -25750409 - L1MA5A LINE L1 0 6297 6008 3434 111 6 14 chr21 19157161 19157676 -25749894 + MER9 LTR ERVK 1 511 0 5006 153 36 39 chr21 19157676 19158620 -25748950 - L1MA5A LINE L1 -289 6008 5061 682 231 0 0 chr21 19159179 19159300 -25748270 + FLAM_A SINE Alu 2 122 -11 286 189 40 0 chr21 19159326 19159400 -25748170 + L1MB2 LINE L1 6094 6170 -1 2154 120 3 0 chr21 19159402 19159694 -25747876 + AluSx SINE Alu 1 293 -19 25 31 0 0 chr21 19159699 19159731 -25747839 + AT_rich Low_complexity Low_complexity 1 32 0 402 291 51 0 chr21 19160980 19161097 -25746473 + MLT1J1 LTR MaLR 1 123 -323 1653 165 88 3 chr21 19161105 19161390 -25746180 + THE1-int LTR MaLR 797 1105 -475 1101 258 16 0 chr21 19161684 19161936 -25745634 - MLT1A1 LTR MaLR 0 365 110 339 133 13 0 chr21 19162037 19162097 -25745473 + LTR41 LTR ERVL 715 795 0 1909 271 134 49 chr21 19162161 19162875 -25744695 + HAL1 LINE L1 617 1269 -1238 2300 89 0 3 chr21 19162875 19163168 -25744402 + AluSx SINE Alu 8 299 -13 1909 271 134 49 chr21 19163168 19164052 -25743518 + HAL1 LINE L1 1269 2351 -156 2359 90 0 6 chr21 19164139 19164451 -25743119 - AluY SINE Alu -1 310 1 231 301 0 0 chr21 19164454 19164527 -25743043 + HAL1 LINE L1 2430 2502 -5 2197 116 3 0 chr21 19164962 19165272 -25742298 - AluSx SINE Alu -1 311 1 412 387 0 28 chr21 19166026 19166238 -25741332 + L3 LINE CR1 1352 1557 -20 252 0 0 0 chr21 19167011 19167039 -25740531 + (TTTG)n Simple_repeat Simple_repeat 4 31 0 22 0 0 0 chr21 19167603 19167625 -25739945 + AT_rich Low_complexity Low_complexity 1 22 0 2181 189 29 10 chr21 19167928 19168346 -25739224 - MSTB1 LTR MaLR -6 426 1 288 299 37 37 chr21 19168465 19168572 -25738998 - MIR SINE MIR -151 111 5 3774 141 10 72 chr21 19169967 19170699 -25736871 - LTR8 LTR ERV1 -5 686 1 450 228 20 0 chr21 19171173 19171274 -25736296 - MIR SINE MIR 0 262 160 1966 200 83 33 chr21 19171276 19171756 -25735814 - MLT1D LTR MaLR -1 504 1 551 275 84 14 chr21 19171760 19171902 -25735668 - MIR SINE MIR -109 153 2 388 263 6 70 chr21 19172279 19172435 -25735135 + MER5A DNA MER1_type 43 188 -1 715 191 98 17 chr21 19172466 19172639 -25734931 + MER20 DNA MER1_type 1 187 -32 21 36 0 0 chr21 19172843 19172871 -25734699 + AT_rich Low_complexity Low_complexity 1 28 0 2404 94 0 0 chr21 19172999 19173306 -25734264 + AluSc SINE Alu 1 307 -2 361 220 154 0 chr21 19173353 19173444 -25734126 + MIR SINE MIR 38 142 -120 48 43 0 0 chr21 19175788 19175857 -25731713 + AT_rich Low_complexity Low_complexity 1 69 0 269 333 22 15 chr21 19176028 19176163 -25731407 + (TATATG)n Simple_repeat Simple_repeat 5 140 0 1016 139 0 0 chr21 19176234 19176399 -25731171 + L1MA4 LINE L1 6129 6293 -7 28 0 0 0 chr21 19176482 19176510 -25731060 + AT_rich Low_complexity Low_complexity 1 28 0 379 352 26 23 chr21 19177535 19177793 -25729777 - MLT1J2 LTR MaLR -245 205 2 221 0 35 0 chr21 19178112 19178141 -25729429 + (CATA)n Simple_repeat Simple_repeat 3 32 0 297 167 0 0 chr21 19178620 19178674 -25728896 + GA-rich Low_complexity Low_complexity 3 56 0 228 220 68 0 chr21 19178769 19178828 -25728742 - MLT1L LTR MaLR -8 607 545 1469 194 45 45 chr21 19179398 19179779 -25727791 + MLT1B LTR MaLR 10 390 0 204 97 0 0 chr21 19179857 19179888 -25727682 + (TTTTC)n Simple_repeat Simple_repeat 1 31 0 359 220 156 96 chr21 19180669 19180887 -25726683 - MER46C DNA MER2_type -107 231 1 202 309 128 0 chr21 19180907 19181001 -25726569 - MIR SINE MIR -123 139 34 264 284 0 0 chr21 19182312 19182379 -25725191 + (TATATG)n Simple_repeat Simple_repeat 2 68 0 27 0 0 0 chr21 19182382 19182409 -25725161 + AT_rich Low_complexity Low_complexity 1 27 0 5545 122 40 7 chr21 19182508 19183562 -25724008 - L1PA14 LINE L1 -1 6160 5098 328 188 12 12 chr21 19185727 19185812 -25721758 + CT-rich Low_complexity Low_complexity 2 86 0 357 292 53 0 chr21 19186291 19186404 -25721166 + MIR3 SINE MIR 81 199 -9 1030 86 33 0 chr21 19186548 19186699 -25720871 - L1PA11 LINE L1 -1 6173 6018 367 187 23 8 chr21 19187131 19187222 -25720348 + LTR16C LTR ERVL 358 482 -4 189 0 0 0 chr21 19187249 19187270 -25720300 + (CA)n Simple_repeat Simple_repeat 1 21 0 23 0 0 0 chr21 19187599 19187622 -25719948 + AT_rich Low_complexity Low_complexity 1 23 0 645 284 34 80 chr21 19187749 19188022 -25719548 + L2 LINE L2 2349 2604 -710 458 136 118 55 chr21 19188022 19188132 -25719438 + FLAM_C SINE Alu 5 121 -12 645 284 34 80 chr21 19188132 19188207 -25719363 + L2 LINE L2 2604 2681 -633 460 283 189 0 chr21 19188382 19188562 -25719008 + L2 LINE L2 2725 2938 -376 23 0 0 0 chr21 19189181 19189204 -25718366 + AT_rich Low_complexity Low_complexity 1 23 0 1737 163 11 0 chr21 19191122 19191436 -25716134 - AluJo SINE Alu 0 319 3 350 331 24 36 chr21 19191750 19191916 -25715654 + L2 LINE L2 3150 3313 0 191 373 38 57 chr21 19191960 19192118 -25715452 - MIR3 SINE MIR -47 161 7 443 288 27 14 chr21 19192359 19192505 -25715065 - L3 LINE CR1 -751 826 679 1638 218 43 48 chr21 19192608 19193071 -25714499 - MLT1C LTR MaLR 0 467 7 189 0 0 0 chr21 19193234 19193255 -25714315 + (TG)n Simple_repeat Simple_repeat 2 22 0 2343 78 0 3 chr21 19193369 19193663 -25713907 - AluSc SINE Alu -16 293 1 22 0 0 0 chr21 19194532 19194554 -25713016 + AT_rich Low_complexity Low_complexity 1 22 0 746 134 0 8 chr21 19195414 19195533 -25712037 - FLAM_C SINE Alu -25 118 1 369 114 0 43 chr21 19196503 19196573 -25710997 - L1MC2 LINE L1 -130 6214 6148 271 45 68 0 chr21 19196608 19196652 -25710918 + L1MC2 LINE L1 6150 6196 -148 * 1238 194 30 11 chr21 19196616 19196879 -25710691 - L1MC2 LINE L1 -160 6184 5917 21 89 0 0 chr21 19197331 19197387 -25710183 + AT_rich Low_complexity Low_complexity 1 56 0 196 120 40 0 chr21 19198750 19198800 -25708770 + (TCTA)n Simple_repeat Simple_repeat 1 52 0 216 0 0 0 chr21 19199970 19199994 -25707576 + (TC)n Simple_repeat Simple_repeat 2 25 0 311 319 81 38 chr21 19201097 19201257 -25706313 + MLT1L LTR MaLR 110 276 -339 283 211 0 92 chr21 19201653 19201729 -25705841 + LTR40a LTR ERVL 1 69 -450 290 369 33 8 chr21 19201931 19202053 -25705517 + LTR40a LTR ERVL 237 361 -158 334 175 18 0 chr21 19202165 19202222 -25705348 + LTR40b LTR ERVL 397 454 -8 192 152 0 0 chr21 19202453 19202486 -25705084 + L2 LINE L2 2703 2735 -579 1650 254 28 24 chr21 19202871 19203410 -25704160 - MLT1F LTR MaLR 0 542 2 4896 133 13 1 chr21 19204443 19205917 -25701653 - L1PA16 LINE L1 -9 6157 4705 1121 262 80 31 chr21 19207981 19208405 -25699165 + MSTB2 LTR MaLR 1 445 -12 1602 204 64 12 chr21 19208741 19209085 -25698485 + MLT1A1 LTR MaLR 4 365 0 187 366 65 57 chr21 19209377 19209500 -25698070 - L2 LINE L2 -33 3239 3116 289 262 95 40 chr21 19211645 19211771 -25695799 - L2 LINE L2 -5 3308 3176 1392 179 47 50 chr21 19212245 19212542 -25695028 - AluJo SINE Alu -16 296 1 219 282 120 49 chr21 19212860 19213002 -25694568 + MIR SINE MIR 36 187 -75 2052 183 49 2 chr21 19213259 19213668 -25693902 + MSTA LTR MaLR 1 428 0 597 171 0 0 chr21 19215206 19215323 -25692247 + (TG)n Simple_repeat Simple_repeat 2 118 0 2244 107 3 0 chr21 19215516 19215816 -25691754 - AluSp SINE Alu -12 301 1 585 275 101 4 chr21 19216742 19216989 -25690581 - LTR33A LTR ERVL -22 501 231 1592 187 62 30 chr21 19217067 19217436 -25690134 + MLT1B LTR MaLR 1 381 -9 250 222 341 15 chr21 19217619 19217754 -25689816 - MIR SINE MIR -82 180 2 360 0 0 0 chr21 19217892 19217932 -25689638 + (TG)n Simple_repeat Simple_repeat 1 40 0 1531 176 23 0 chr21 19218082 19218338 -25689232 - AluJb SINE Alu -20 292 31 219 167 0 0 chr21 19218394 19218436 -25689134 + (TG)n Simple_repeat Simple_repeat 2 43 0 1204 119 5 25 chr21 19219714 19219915 -25687655 + L1PA11 LINE L1 5977 6173 -1 2420 49 0 7 chr21 19220166 19220470 -25687100 + AluY SINE Alu 1 302 -9 926 201 67 24 chr21 19221486 19221695 -25685875 + MER20 DNA MER1_type 1 218 -1 21 36 0 0 chr21 19222473 19222501 -25685069 + AT_rich Low_complexity Low_complexity 1 28 0 623 243 118 7 chr21 19222685 19222829 -25684741 + MER45A DNA AcHobo 18 177 -1 1596 195 7 0 chr21 19222995 19223292 -25684278 + L1PB4 LINE L1 5808 6106 -50 2663 98 5 5 chr21 19223292 19223668 -25683902 + MLT2A1 LTR ERVL 1 376 -68 237 316 15 23 chr21 19223668 19223801 -25683769 + (CATATA)n Simple_repeat Simple_repeat 1 132 0 * 326 243 36 7 chr21 19223706 19223846 -25683724 + (TA)n Simple_repeat Simple_repeat 1 144 0 359 91 0 0 chr21 19223852 19223907 -25683663 + MLT2A1 LTR ERVL 390 444 0 243 125 0 21 chr21 19223907 19223955 -25683615 + L1PA16 LINE L1 6102 6148 -18 337 266 89 32 chr21 19223981 19224105 -25683465 - MER20 DNA MER1_type -8 211 81 1942 131 10 10 chr21 19224677 19224989 -25682581 + AluSx SINE Alu 1 312 0 25 0 0 0 chr21 19226124 19226149 -25681421 + AT_rich Low_complexity Low_complexity 1 25 0 2205 69 3 38 chr21 19226820 19227140 -25680430 + AluY SINE Alu 1 309 -2 339 345 99 0 chr21 19227323 19227494 -25680076 - MIR SINE MIR -74 188 1 28 61 0 0 chr21 19228085 19228134 -25679436 + AT_rich Low_complexity Low_complexity 1 49 0 327 311 27 20 chr21 19228232 19228553 -25679017 + L1MC/D LINE L1 2171 2456 -3759 1971 148 0 0 chr21 19228679 19228977 -25678593 - AluSx SINE Alu -14 298 1 1918 162 0 10 chr21 19229526 19229929 -25677641 - AluJb SINE Alu 0 405 6 21 0 0 0 chr21 19230391 19230412 -25677158 + AT_rich Low_complexity Low_complexity 1 21 0 249 282 70 14 chr21 19230641 19230783 -25676787 + L1MC/D LINE L1 2739 2888 -3327 2428 151 51 7 chr21 19230783 19231193 -25676377 - MSTA LTR MaLR 0 428 1 389 318 109 55 chr21 19231365 19232032 -25675538 + L1MC/D LINE L1 3152 3854 -2361 2571 42 0 0 chr21 19232674 19232980 -25674590 + AluY SINE Alu 1 306 -5 553 258 85 31 chr21 19232993 19233253 -25674317 + L1MC/D LINE L1 5355 5628 -2249 5091 159 13 8 chr21 19233282 19234568 -25673002 - L1PA16 LINE L1 -4 6162 4874 5520 221 17 15 chr21 19234569 19235873 -25671697 + L1P LINE L1 3382 4688 -1458 295 225 12 0 chr21 19235875 19235955 -25671615 + L1 LINE L1 4786 4866 -1280 190 143 41 0 chr21 19236236 19236285 -25671285 + (TCTA)n Simple_repeat Simple_repeat 4 54 0 191 273 15 30 chr21 19236702 19236768 -25670802 + MIR SINE MIR 82 146 -62 1911 126 4 4 chr21 19236959 19237284 -25670286 + AluSc SINE Alu 1 325 0 33 43 0 0 chr21 19237498 19237545 -25670025 + AT_rich Low_complexity Low_complexity 1 47 0 317 118 24 24 chr21 19237545 19237630 -25669940 + (TA)n Simple_repeat Simple_repeat 2 86 0 367 51 17 17 chr21 19238623 19238682 -25668888 + (TAGA)n Simple_repeat Simple_repeat 4 62 0 199 229 0 0 chr21 19238760 19238795 -25668775 - L2 LINE L2 -14 3299 3265 6413 65 33 4 chr21 19239226 19240199 -25667371 - L1PA7 LINE L1 -6 6148 5151 21827 132 18 87 chr21 19240209 19244616 -25662954 + L1P LINE L1 12 4115 -2031 261 0 0 0 chr21 19244971 19245000 -25662570 + (TG)n Simple_repeat Simple_repeat 2 30 0 4928 116 7 7 chr21 19245707 19246438 -25661132 + LTR17 LTR ERV1 1 731 -49 24 32 0 0 chr21 19246490 19246521 -25661049 + AT_rich Low_complexity Low_complexity 1 31 0 2072 226 117 5 chr21 19247270 19247859 -25659711 + L1MC4 LINE L1 7080 7734 -308 21 57 0 0 chr21 19248275 19248310 -25659260 + AT_rich Low_complexity Low_complexity 1 35 0 299 109 0 0 chr21 19248481 19248527 -25659043 + MADE1 DNA Mariner 35 80 0 579 255 86 115 chr21 19249275 19249683 -25657887 + MLT1J2 LTR MaLR 34 429 -21 220 402 0 0 chr21 19250191 19250298 -25657272 - MIR SINE MIR -33 229 123 225 65 0 0 chr21 19253164 19253195 -25654375 + (TTG)n Simple_repeat Simple_repeat 2 32 0 1959 143 7 10 chr21 19253730 19254038 -25653532 - AluSx SINE Alu 0 312 6 21 36 0 0 chr21 19254621 19254649 -25652921 + AT_rich Low_complexity Low_complexity 1 28 0 7957 87 11 0 chr21 19254724 19256142 -25651428 + L1P3 LINE L1 4242 5670 -484 318 50 0 0 chr21 19256412 19256452 -25651118 + (CA)n Simple_repeat Simple_repeat 2 41 0 670 131 0 0 chr21 19256508 19256607 -25650963 + AluSp/q SINE Alu 187 285 -28 1839 169 22 34 chr21 19257261 19257522 -25650048 - MER47A DNA MER2_type -1960 363 106 2045 131 123 11 chr21 19257522 19257903 -25649667 - MSTA LTR MaLR -4 424 1 1839 169 22 34 chr21 19257903 19257996 -25649574 - MER47A DNA MER2_type -2217 106 13 1381 244 110 21 chr21 19258029 19258447 -25649123 - MLT2B1 LTR ERVL -65 455 1 293 319 32 0 chr21 19258859 19258953 -25648617 - L2 LINE L2 -3 3310 3214 240 86 0 0 chr21 19260338 19260373 -25647197 + (TTTTG)n Simple_repeat Simple_repeat 2 36 0 185 243 81 27 chr21 19260866 19260940 -25646630 + MER5B DNA MER1_type 101 178 0 334 326 163 0 chr21 19260948 19261089 -25646481 - MER5A DNA MER1_type 0 189 26 25 0 0 0 chr21 19261388 19261413 -25646157 + AT_rich Low_complexity Low_complexity 1 25 0 21 57 0 0 chr21 19261528 19261563 -25646007 + AT_rich Low_complexity Low_complexity 1 35 0 24 32 0 0 chr21 19263767 19263798 -25643772 + AT_rich Low_complexity Low_complexity 1 31 0 21 71 0 0 chr21 19264226 19264268 -25643302 + AT_rich Low_complexity Low_complexity 1 42 0 23 33 0 0 chr21 19264290 19264320 -25643250 + AT_rich Low_complexity Low_complexity 1 30 0 222 315 47 34 chr21 19264585 19264734 -25642836 + L2 LINE L2 1865 2015 -1299 1464 241 99 56 chr21 19265119 19265746 -25641824 + MLT1E1 LTR MaLR 1 654 0 1318 271 80 8 chr21 19265746 19266245 -25641325 - L1ME3A LINE L1 -88 6082 5548 406 301 95 47 chr21 19266255 19266793 -25640777 - L1ME3A LINE L1 -845 5301 4738 262 326 29 12 chr21 19266808 19266883 -25640687 - L1ME3A LINE L1 -1446 4700 4628 369 0 0 0 chr21 19266883 19266924 -25640646 + (CA)n Simple_repeat Simple_repeat 2 42 0 262 326 29 12 chr21 19266924 19267020 -25640550 - L1ME3A LINE L1 -1518 4628 4526 32 26 0 0 chr21 19267051 19267090 -25640480 + AT_rich Low_complexity Low_complexity 1 39 0 474 279 76 66 chr21 19267666 19268243 -25639327 - L1ME3A LINE L1 -1795 4351 3769 1261 211 199 12 chr21 19268273 19268686 -25638884 - LTR54B LTR ERV1 -1 497 8 281 240 66 27 chr21 19268689 19268872 -25638698 - L1ME3A LINE L1 -3845 2301 2112 24 67 0 0 chr21 19269959 19270004 -25637566 + AT_rich Low_complexity Low_complexity 1 45 0 2063 106 3 0 chr21 19271465 19271776 -25635794 + AluSq SINE Alu 1 312 0 417 198 0 0 chr21 19271776 19271862 -25635708 + (CATATA)n Simple_repeat Simple_repeat 5 90 0 192 97 0 0 chr21 19272620 19272651 -25634919 + (TC)n Simple_repeat Simple_repeat 2 32 0 191 356 148 0 chr21 19272738 19272853 -25634717 + MIR SINE MIR 52 183 -79 350 294 28 18 chr21 19273480 19273589 -25633981 - MIR SINE MIR -59 149 40 4309 20 0 0 chr21 19273617 19274300 -25633270 + L1P1 LINE L1 5074 5756 -399 1121 141 90 0 chr21 19275968 19276145 -25631425 - AluSx SINE Alu -118 194 2 897 217 30 5 chr21 19276268 19276471 -25631099 - MER3 DNA MER1_type -1 208 1 10289 103 14 0 chr21 19276842 19278194 -25629376 + L1PA8 LINE L1 3841 5202 -970 2246 99 0 7 chr21 19278194 19278496 -25629074 + AluSg SINE Alu 1 300 -10 10289 103 14 0 chr21 19278496 19279477 -25628093 + L1PA8 LINE L1 5202 6167 -5 737 216 133 69 chr21 19281002 19281364 -25626206 - LTR37A LTR ERV1 0 426 42 22 56 0 0 chr21 19281371 19281407 -25626163 + AT_rich Low_complexity Low_complexity 1 36 0 21 0 0 0 chr21 19281567 19281588 -25625982 + AT_rich Low_complexity Low_complexity 1 21 0 511 291 26 0 chr21 19282539 19282690 -25624880 + MIR SINE MIR 56 210 -52 652 230 0 0 chr21 19283112 19283238 -25624332 + FRAM SINE Alu 1 123 -53 1832 205 32 15 chr21 19283238 19283642 -25623928 - L1MA10 LINE L1 -21 6313 5903 * 1979 177 7 27 chr21 19283631 19284043 -25623527 + L1MA10 LINE L1 5483 5886 -282 195 69 0 0 chr21 19285366 19285395 -25622175 + (TAA)n Simple_repeat Simple_repeat 2 30 0 211 234 0 0 chr21 19285551 19285598 -25621972 + (TA)n Simple_repeat Simple_repeat 1 47 0 222 96 39 19 chr21 19288290 19288342 -25619228 + (TCTA)n Simple_repeat Simple_repeat 1 53 0 535 73 0 0 chr21 19288657 19288755 -25618815 - AluSp/q SINE Alu 0 318 221 184 29 29 29 chr21 19290266 19290300 -25617270 + (CAAAAA)n Simple_repeat Simple_repeat 4 37 0 1773 85 127 0 chr21 19290660 19290919 -25616651 + AluSg SINE Alu 1 292 -8 24 0 0 0 chr21 19291050 19291074 -25616496 + AT_rich Low_complexity Low_complexity 1 24 0 22 56 0 0 chr21 19291145 19291181 -25616389 + AT_rich Low_complexity Low_complexity 1 36 0 384 260 23 12 chr21 19291208 19291381 -25616189 + (TA)n Simple_repeat Simple_repeat 1 175 0 29 78 0 0 chr21 19291444 19291508 -25616062 + AT_rich Low_complexity Low_complexity 1 64 0 345 47 0 0 chr21 19291741 19291784 -25615786 + (TTTA)n Simple_repeat Simple_repeat 4 46 0 25 0 0 0 chr21 19293082 19293107 -25614463 + AT_rich Low_complexity Low_complexity 1 25 0 2235 47 0 43 chr21 19293473 19293772 -25613798 - AluY SINE Alu -9 302 17 369 0 0 0 chr21 19293886 19293927 -25613643 + (A)n Simple_repeat Simple_repeat 1 41 0 22 0 0 0 chr21 19294403 19294425 -25613145 + AT_rich Low_complexity Low_complexity 1 22 0 2115 81 20 14 chr21 19294702 19294998 -25612572 + AluSp SINE Alu 1 298 -15 5385 154 24 25 chr21 19295830 19296944 -25610626 - L1MA5 LINE L1 -1 7361 6248 6395 224 81 17 chr21 19296944 19297322 -25610248 - L1MA5 LINE L1 -1357 5851 5499 1951 153 0 13 chr21 19297322 19297629 -25609941 - AluSx SINE Alu -9 303 1 6395 224 81 17 chr21 19297629 19299928 -25607642 - L1MA5 LINE L1 -1709 5499 3349 1693 145 39 7 chr21 19299928 19300083 -25607487 - AluSx SINE Alu -21 291 122 279 0 0 0 chr21 19300083 19300114 -25607456 + (TG)n Simple_repeat Simple_repeat 1 31 0 1693 145 39 7 chr21 19300114 19300240 -25607330 - AluSx SINE Alu -190 122 1 6395 224 81 17 chr21 19300240 19300478 -25607092 - L1MA5 LINE L1 -3859 3349 3128 216 0 0 0 chr21 19300478 19300502 -25607068 + (TTTTA)n Simple_repeat Simple_repeat 2 25 0 6395 224 81 17 chr21 19300502 19300656 -25606914 - L1MA5 LINE L1 -4080 3128 2985 333 0 0 0 chr21 19300656 19300693 -25606877 + (TA)n Simple_repeat Simple_repeat 1 37 0 6395 224 81 17 chr21 19300693 19301841 -25605729 - L1MA5 LINE L1 -4223 2985 366 206 266 147 46 chr21 19301940 19302049 -25605521 + MIR3 SINE MIR 83 202 -6 2037 150 33 11 chr21 19303609 19303976 -25603594 - THE1C LTR MaLR 0 375 1 265 333 190 10 chr21 19304111 19304306 -25603264 + MIR SINE MIR 15 244 -18 2651 32 0 0 chr21 19304698 19305007 -25602563 + AluY SINE Alu 1 309 -2 246 349 31 31 chr21 19305439 19305568 -25602002 + MIR3 SINE MIR 48 176 -32 21 82 0 0 chr21 19305681 19305730 -25601840 + AT_rich Low_complexity Low_complexity 1 49 0 2003 120 0 7 chr21 19306691 19307139 -25600431 + AluSq SINE Alu 13 458 0 933 227 23 2 chr21 19307217 19307449 -25600121 + MLT1A1 LTR MaLR 1 251 -123 1620 163 18 7 chr21 19307881 19308158 -25599412 + AluSx SINE Alu 1 280 -32 245 144 44 0 chr21 19308162 19308252 -25599318 + (TA)n Simple_repeat Simple_repeat 2 95 0 568 200 44 62 chr21 19308385 19308545 -25599025 - MER20 DNA MER1_type -25 194 38 2077 94 0 7 chr21 19308797 19309083 -25598487 + AluY SINE Alu 1 284 -27 180 0 0 0 chr21 19309096 19309116 -25598454 + (TAAA)n Simple_repeat Simple_repeat 3 22 0 2021 107 17 10 chr21 19310016 19310305 -25597265 + AluSp SINE Alu 1 291 -22 23 0 0 0 chr21 19310305 19310328 -25597242 + AT_rich Low_complexity Low_complexity 1 23 0 294 247 113 0 chr21 19310384 19310481 -25597089 + L1ME4a LINE L1 5944 6051 -70 1299 214 140 17 chr21 19312899 19313249 -25594321 - MSTD LTR MaLR 0 396 4 334 68 17 17 chr21 19313799 19313858 -25593712 + (TC)n Simple_repeat Simple_repeat 1 59 0 2178 103 17 0 chr21 19314059 19314351 -25593219 - AluSg SINE Alu -13 297 1 378 0 0 0 chr21 19314541 19314583 -25592987 + (TG)n Simple_repeat Simple_repeat 1 42 0 761 203 123 5 chr21 19314587 19314774 -25592796 + MER2 DNA MER2_type 2 210 -135 188 228 18 0 chr21 19316192 19316249 -25591321 + (TAG)n Simple_repeat Simple_repeat 2 59 0 188 239 43 0 chr21 19316390 19316436 -25591134 - MIR SINE MIR -103 159 112 1661 182 24 7 chr21 19316511 19316802 -25590768 - AluSx SINE Alu -16 296 1 1484 272 15 48 chr21 19316807 19317039 -25590531 - L1MD2 LINE L1 -1 6358 6149 1908 167 14 16 chr21 19317039 19317404 -25590166 - MLT1A1 LTR MaLR 0 365 2 1484 272 15 48 chr21 19317404 19317645 -25589925 - L1MD2 LINE L1 -210 6149 5901 247 307 9 53 chr21 19317795 19317909 -25589661 + L2 LINE L2 3205 3313 0 21 0 0 0 chr21 19318289 19318310 -25589260 + AT_rich Low_complexity Low_complexity 1 21 0 266 250 0 0 chr21 19318895 19318963 -25588607 - L1MD1 LINE L1 -274 5968 5901 281 26 26 0 chr21 19320155 19320193 -25587377 + (TG)n Simple_repeat Simple_repeat 2 40 0 639 249 151 45 chr21 19320355 19320752 -25586818 + LTR33 LTR ERVL 83 521 0 2084 53 85 11 chr21 19321799 19322080 -25585490 + AluY SINE Alu 1 302 -9 23 33 0 0 chr21 19322357 19322387 -25585183 + AT_rich Low_complexity Low_complexity 1 30 0 494 226 174 7 chr21 19323144 19323299 -25584271 + MER5A DNA MER1_type 9 189 0 21 0 0 0 chr21 19323334 19323355 -25584215 + AT_rich Low_complexity Low_complexity 1 21 0 347 184 142 57 chr21 19323654 19323795 -25583775 + L2 LINE L2 2637 2789 -525 609 258 72 72 chr21 19323888 19324249 -25583321 + L2 LINE L2 2953 3313 0 305 155 42 14 chr21 19324500 19324571 -25582999 - L1MA5A LINE L1 -3 6294 6222 796 138 48 7 chr21 19324571 19324716 -25582854 - THE1B LTR MaLR -5 359 209 253 297 81 27 chr21 19325019 19325130 -25582440 + L2 LINE L2 3197 3313 0 34 55 0 0 chr21 19325440 19325495 -25582075 + AT_rich Low_complexity Low_complexity 1 55 0 21 0 0 0 chr21 19325586 19325607 -25581963 + AT_rich Low_complexity Low_complexity 1 21 0 29 60 0 0 chr21 19325893 19325943 -25581627 + AT_rich Low_complexity Low_complexity 1 50 0 24 32 0 0 chr21 19325965 19325996 -25581574 + AT_rich Low_complexity Low_complexity 1 31 0 201 330 66 0 chr21 19326468 19326559 -25581011 + L2 LINE L2 2372 2468 -846 233 135 19 0 chr21 19328501 19328553 -25579017 + (TCTA)n Simple_repeat Simple_repeat 1 53 0 22 0 0 0 chr21 19329317 19329339 -25578231 + AT_rich Low_complexity Low_complexity 1 22 0 3917 192 53 75 chr21 19329411 19330514 -25577056 - Tigger6a DNA MER2_type 0 1083 5 403 262 79 0 chr21 19331600 19331726 -25575844 - MIR SINE MIR -26 236 101 2214 131 38 14 chr21 19332416 19332782 -25574788 - THE1C LTR MaLR 0 375 1 304 292 153 14 chr21 19334968 19335112 -25572458 + MLT1I LTR MaLR 3 166 -243 246 305 66 13 chr21 19335158 19335309 -25572261 + MLT1I LTR MaLR 245 403 -6 265 330 121 11 chr21 19337541 19337632 -25569938 - L2 LINE L2 -31 3282 3182 245 307 34 11 chr21 19337700 19337788 -25569782 - L2 LINE L2 -366 2947 2858 1320 255 148 35 chr21 19337788 19338275 -25569295 + MLT1F LTR MaLR 1 542 0 317 321 114 16 chr21 19338654 19338838 -25568732 + L1ME LINE L1 5360 5561 -601 254 268 0 14 chr21 19338929 19339000 -25568570 + L1P3 LINE L1 5685 5754 -418 1448 158 0 16 chr21 19339176 19339430 -25568140 + AluJo SINE Alu 63 312 0 24 0 0 0 chr21 19339528 19339552 -25568018 + AT_rich Low_complexity Low_complexity 1 24 0 394 351 40 7 chr21 19340277 19340428 -25567142 - MIR SINE MIR -43 219 64 21 82 0 0 chr21 19340660 19340709 -25566861 + AT_rich Low_complexity Low_complexity 1 49 0 21 0 0 0 chr21 19342428 19342449 -25565121 +