496 304 58 31 chr1 321 563 -282193101 - MIR SINE MIR -10 252 1 2182 121 7 0 chr1 1713 2019 -282191645 + AluSx SINE Alu 1 308 -4 5087 58 20 1 chr1 2481 3389 -282190275 - L1PA7 LINE L1 -519 5635 4716 4071 52 2 2 chr1 3389 3888 -282189776 + L1PA7 LINE L1 5652 6150 -4 283 320 96 17 chr1 4183 4361 -282189303 - MIR SINE MIR -42 220 29 914 134 0 0 chr1 4568 4695 -282188969 - FLAM_C SINE Alu -16 127 1 2161 114 0 14 chr1 6129 6426 -282187238 + AluSx SINE Alu 1 293 -19 196 242 16 32 chr1 10004 10066 -282183598 - L2 LINE L2 -7 3265 3205 208 114 43 43 chr1 11248 11318 -282182346 + (CATA)n Simple_repeat Simple_repeat 1 70 0 2950 176 42 8 chr1 12040 12570 -282181094 + MER44D DNA MER2_type 2 604 -1 4751 164 19 23 chr1 15095 15995 -282177669 + L1MB3 LINE L1 5286 6181 -2 24 0 0 0 chr1 16786 16810 -282176854 + AT_rich Low_complexity Low_complexity 1 24 0 612 180 78 7 chr1 16857 16994 -282176670 + MLT1C LTR MaLR 336 465 -2 512 278 83 40 chr1 18807 19156 -282174508 + L1 LINE L1 2955 3318 -2828 257 150 0 17 chr1 19159 19219 -282174445 + L1MC5 LINE L1 7473 7531 -430 380 236 21 62 chr1 19306 19450 -282174214 + L1ME3A LINE L1 5962 6099 -71 25 0 0 0 chr1 19523 19548 -282174116 + AT_rich Low_complexity Low_complexity 1 25 0 2977 212 9 3 chr1 19613 20268 -282173396 + L1 LINE L1 4623 5281 -865 245 88 0 0 chr1 20240 20274 -282173390 + L1P LINE L1 5254 5287 -885 * 352 303 74 6 chr1 21024 21186 -282172478 - MER58A DNA MER1_type -51 173 1 437 246 136 35 chr1 21611 21810 -282171854 + Charlie8 DNA MER1_type 94 276 -2141 521 261 118 29 chr1 22048 22286 -282171378 + MLT1I LTR MaLR 118 376 -33 1119 239 0 0 chr1 22713 22931 -282170733 + Tigger7 DNA MER2_type 11 228 -505 25 31 0 0 chr1 25173 25205 -282168459 + AT_rich Low_complexity Low_complexity 1 32 0 23 0 0 0 chr1 25457 25480 -282168184 + AT_rich Low_complexity Low_complexity 1 23 0 218 239 0 45 chr1 28674 28762 -282164902 + (CGGGG)n Simple_repeat Simple_repeat 1 84 0 201 167 0 0 chr1 29360 29396 -282164268 + (TA)n Simple_repeat Simple_repeat 2 37 0 307 198 25 12 chr1 29856 29937 -282163727 - L1M4 LINE L1 -1042 5104 5023 667 260 41 18 chr1 29945 30114 -282163550 - MER41D LTR ERV1 -10 547 375 1783 106 4 12 chr1 30150 30396 -282163268 - AluSx SINE Alu -66 246 3 1116 258 153 50 chr1 30729 31199 -282162465 - HAL1 LINE L1 -655 1852 1432 1323 236 32 43 chr1 31199 31568 -282162096 + MLT1A1 LTR MaLR 1 365 0 1116 258 153 50 chr1 31568 31982 -282161682 - HAL1 LINE L1 -1075 1432 877 311 319 36 7 chr1 32021 32159 -282161505 - HAL1 LINE L1 -1745 762 621 245 286 12 36 chr1 33656 33740 -282159924 + CT-rich Low_complexity Low_complexity 6 87 0 1850 136 29 0 chr1 33870 34188 -282159476 - AluSx SINE Alu 0 326 1 217 297 0 0 chr1 34740 34804 -282158860 - MIR3 SINE MIR -37 171 108 309 294 75 20 chr1 35894 36040 -282157624 - MLT1K LTR MaLR -15 573 420 309 186 0 0 chr1 36046 36116 -282157548 + (TCCA)n Simple_repeat Simple_repeat 1 70 0 208 257 18 0 chr1 36202 36315 -282157349 + (TCCA)n Simple_repeat Simple_repeat 1 115 0 246 255 61 20 chr1 36757 36855 -282156809 - L2 LINE L2 -155 3117 3016 456 239 169 109 chr1 37601 37986 -282155678 + LTR16C LTR ERVL 69 476 -15 873 106 53 15 chr1 38164 38296 -282155368 - FLAM_C SINE Alu -6 137 1 789 218 24 12 chr1 38474 38639 -282155025 - MER58A DNA MER1_type -18 206 40 4840 225 125 29 chr1 38646 40449 -282153215 + L1M4b LINE L1 12 2002 -4853 333 257 0 0 chr1 40449 40706 -282152958 + (CA)n Simple_repeat Simple_repeat 1 257 0 1028 301 32 9 chr1 40723 41296 -282152368 + L1M4b LINE L1 1983 2723 -4415 935 167 108 39 chr1 41296 41500 -282152164 + L1MB8 LINE L1 5894 6111 -67 361 282 8 17 chr1 42611 42728 -282150936 + MER5A DNA MER1_type 9 124 -65 340 306 70 0 chr1 42759 42916 -282150748 + MIR SINE MIR 78 245 -17 1883 158 75 3 chr1 45085 45445 -282148219 + MLT1B LTR MaLR 1 386 -4 250 173 0 0 chr1 46029 46088 -282147576 + Charlie5 DNA MER1_type 65 123 -2489 3490 169 38 14 chr1 47068 47724 -282145940 + L1MC1 LINE L1 5662 6333 0 579 245 80 0 chr1 48073 48224 -282145440 + MER103 DNA DNA 2 164 -2 281 292 0 14 chr1 48959 49031 -282144633 - MIR SINE MIR -186 76 6 1735 189 113 0 chr1 50655 51010 -282142654 - MSTD LTR MaLR 0 396 2 5024 21 0 0 chr1 51744 52307 -282141357 - L1PA3 LINE L1 0 6155 5593 827 180 0 0 chr1 53933 54061 -282139603 - FLAM_A SINE Alu -5 128 1 2099 98 0 3 chr1 54067 54362 -282139302 - AluSx SINE Alu -18 294 1 29 0 0 0 chr1 54454 54483 -282139181 + AT_rich Low_complexity Low_complexity 1 29 0 262 316 7 37 chr1 56260 56396 -282137268 + (TATG)n Simple_repeat Simple_repeat 2 133 0 427 290 5 43 chr1 56426 56612 -282137052 + (TG)n Simple_repeat Simple_repeat 2 180 0 252 383 70 11 chr1 59128 59413 -282134251 - MARNA DNA Mariner -110 476 175 192 357 0 0 chr1 60018 60088 -282133576 - L3 LINE CR1 0 1577 1508 484 307 68 49 chr1 60195 60811 -282132853 - L1ME4a LINE L1 -11 6110 5483 237 33 0 0 chr1 61227 61257 -282132407 + (T)n Simple_repeat Simple_repeat 1 30 0 1988 126 7 7 chr1 62887 63181 -282130483 - AluSx SINE Alu -18 294 1 702 170 0 50 chr1 63486 63627 -282130037 - AluJo SINE Alu -177 135 2 808 251 6 0 chr1 63918 64101 -282129563 - LTR2 LTR ERV1 0 449 266 354 301 6 81 chr1 64097 64270 -282129394 - LTR2 LTR ERV1 -289 160 1 * 287 303 8 17 chr1 64747 64866 -282128798 + (TATATG)n Simple_repeat Simple_repeat 1 118 0 * 553 118 69 22 chr1 64819 65281 -282128383 + (TAGA)n Simple_repeat Simple_repeat 1 483 0 781 303 141 17 chr1 65842 66324 -282127340 - MLT1K LTR MaLR -9 579 38 263 242 84 21 chr1 68694 68789 -282124875 + MIR SINE MIR 66 166 -96 611 229 35 24 chr1 69410 69580 -282124084 - MLT1B LTR MaLR -35 355 184 22 35 0 0 chr1 71374 71403 -282122261 + AT_rich Low_complexity Low_complexity 1 29 0 1443 134 0 67 chr1 72972 73286 -282120378 - AluSx SINE Alu -7 305 13 287 155 0 40 chr1 73304 73388 -282120276 - Alu SINE Alu -6 296 243 321 205 12 48 chr1 74001 74084 -282119580 + HERV16 LTR ERVL 349 428 -4568 747 238 38 21 chr1 74759 74994 -282118670 - L1MB5 LINE L1 -8 6166 5928 292 300 129 24 chr1 75127 75297 -282118367 - L1MB5 LINE L1 -540 5638 5451 333 203 16 0 chr1 77678 77742 -282115922 - AluSc SINE Alu -117 182 118 677 285 77 8 chr1 77757 78122 -282115542 - L1MB5 LINE L1 -2389 3757 3368 979 163 6 17 chr1 82180 82402 -282111262 - AluJb SINE Alu 0 312 137 192 125 0 0 chr1 82460 82492 -282111172 + (TCTA)n Simple_repeat Simple_repeat 3 34 0 1946 93 11 14 chr1 82493 82772 -282110892 - AluSx SINE Alu -27 285 8 895 271 118 34 chr1 82783 83197 -282110467 - L1ME1 LINE L1 -44 6122 5674 765 205 0 54 chr1 83199 83384 -282110280 + MER4A LTR ERV1 1 175 -489 1636 126 13 82 chr1 83429 83689 -282109975 + MER4A LTR ERV1 369 605 -59 2458 43 0 3 chr1 83689 83989 -282109675 - AluY SINE Alu -12 299 1 1636 126 13 82 chr1 83989 84045 -282109619 + MER4A LTR ERV1 605 663 -1 1391 202 99 69 chr1 84046 84384 -282109280 - L1ME1 LINE L1 -491 5675 5349 1964 135 3 0 chr1 84384 84673 -282108991 - AluSx SINE Alu -17 295 6 1391 202 99 69 chr1 84673 84747 -282108917 - L1ME1 LINE L1 -817 5349 5279 1964 129 0 16 chr1 84747 85057 -282108607 - AluSx SINE Alu -7 305 1 1391 202 99 69 chr1 85057 85398 -282108266 - L1ME1 LINE L1 -887 5279 4897 1308 114 0 0 chr1 85403 85579 -282108085 + AluSg SINE Alu 1 176 -134 516 321 117 14 chr1 87157 87515 -282106149 - L2 LINE L2 -42 3271 2877 429 243 7 86 chr1 87634 87774 -282105890 - MER63 DNA MER1_type -307 755 1 249 232 0 0 chr1 87952 88021 -282105643 + (TG)n Simple_repeat Simple_repeat 1 69 0 449 270 0 6 chr1 88046 88224 -282105440 + (TG)n Simple_repeat Simple_repeat 1 177 0 218 219 0 0 chr1 88226 88267 -282105397 + (TATG)n Simple_repeat Simple_repeat 4 44 0 351 274 17 0 chr1 88272 88447 -282105217 + (TG)n Simple_repeat Simple_repeat 1 178 0 300 272 58 0 chr1 88448 88551 -282105113 + (CATG)n Simple_repeat Simple_repeat 1 109 0 297 203 121 18 chr1 92976 93069 -282100595 + MIR SINE MIR 64 162 -46 750 267 70 47 chr1 93386 93808 -282099856 - L1MEc LINE L1 -5497 899 465 1850 155 3 10 chr1 93808 94117 -282099547 - AluSp SINE Alu -1 312 6 750 267 70 47 chr1 94117 94139 -282099525 - L1MEc LINE L1 -5931 465 445 205 203 95 40 chr1 95875 95949 -282097715 - L2 LINE L2 -4 3268 3191 272 294 43 80 chr1 96141 96328 -282097336 + L2 LINE L2 2993 3172 -100 195 315 128 20 chr1 96793 96942 -282096722 + MIR SINE MIR 76 240 -22 256 329 0 0 chr1 99781 99860 -282093804 - L2 LINE L2 0 3272 3194 2174 108 10 0 chr1 100027 100333 -282093331 + AluSx SINE Alu 1 309 -3 1361 93 0 0 chr1 100333 100515 -282093149 + AluSg/x SINE Alu 126 307 -5 349 320 186 8 chr1 100528 100808 -282092856 - L2 LINE L2 -273 3040 2718 248 378 139 7 chr1 100891 101042 -282092622 - L2 LINE L2 -781 2533 2363 244 43 21 43 chr1 103700 103747 -282089917 + (TTTTG)n Simple_repeat Simple_repeat 2 47 0 1361 171 47 18 chr1 103755 104029 -282089635 - AluJo SINE Alu -30 282 1 516 318 0 30 chr1 107793 108172 -282085492 + (TG)n Simple_repeat Simple_repeat 1 367 0 419 343 0 4 chr1 108196 108505 -282085159 + (TG)n Simple_repeat Simple_repeat 1 307 0 2022 102 11 0 chr1 111512 111796 -282081868 - AluSx SINE Alu -24 288 2 211 204 0 0 chr1 113449 113493 -282080171 + GA-rich Low_complexity Low_complexity 2 45 0 198 0 0 0 chr1 115024 115046 -282078618 + (A)n Simple_repeat Simple_repeat 1 22 0 191 376 118 12 chr1 117802 117972 -282075692 + MIR SINE MIR 51 238 -24 727 224 12 0 chr1 119541 119711 -282073953 - L1MB4 LINE L1 -2 6178 6007 201 147 0 0 chr1 119844 119878 -282073786 + (CATATA)n Simple_repeat Simple_repeat 2 35 0 4867 244 61 28 chr1 119881 121895 -282071769 - L1 LINE L1 -1204 4942 2864 10281 124 8 6 chr1 123148 123412 -282070252 - L1PA7 LINE L1 -5 6464 6202 1941 108 64 3 chr1 123412 123707 -282069957 - AluSp SINE Alu 0 313 1 10281 124 8 6 chr1 123707 125808 -282067856 - L1PA7 LINE L1 -267 6202 4094 5405 246 31 34 chr1 125817 127647 -282066017 - L1PA7 LINE L1 -4639 1812 10 725 336 22 47 chr1 127882 128331 -282065333 + L1MC4a LINE L1 5491 5928 -1880 388 251 17 62 chr1 128549 128728 -282064936 - L1M4 LINE L1 -2554 3592 3422 626 203 5 26 chr1 128773 129143 -282064521 + GA-rich Low_complexity Low_complexity 1 362 0 2451 156 13 5 chr1 129420 129811 -282063853 + MSTD LTR MaLR 1 394 -2 801 86 19 0 chr1 130090 130196 -282063468 + BSR/Beta Satellite Satellite 1 107 -64 466 275 69 12 chr1 130230 130390 -282063274 + MIR SINE MIR 27 195 -67 284 191 87 87 chr1 130391 130465 -282063199 - MLT1I LTR MaLR -1 408 332 2035 121 0 43 chr1 130465 130788 -282062876 - AluY SINE Alu -2 309 1 284 191 87 87 chr1 130788 130839 -282062825 - MLT1I LTR MaLR -76 333 283 494 141 0 0 chr1 130850 130921 -282062743 + AluS SINE Alu 220 290 -19 302 318 64 12 chr1 131077 131250 -282062414 + LTR41 LTR ERVL 1 182 -591 2423 199 67 74 chr1 131789 132267 -282061397 - LOR1-int LTR ERV1 -2443 3888 3408 2143 99 0 7 chr1 132267 132559 -282061105 - AluSp SINE Alu -21 292 3 2423 199 67 74 chr1 132559 132648 -282061016 - LOR1-int LTR ERV1 -2923 3408 3320 1518 183 59 0 chr1 132648 132921 -282060743 + AluJb SINE Alu 1 289 -23 2423 199 67 74 chr1 132921 133393 -282060271 - LOR1-int LTR ERV1 -3011 3320 1010 1622 167 3 50 chr1 133403 133720 -282059944 + AluJo SINE Alu 3 304 -8 607 255 52 38 chr1 133747 133959 -282059705 - LTR57-int LTR ERVL -4768 575 361 790 122 0 0 chr1 133959 134066 -282059598 + AluSq/x SINE Alu 1 107 -205 2246 93 3 3 chr1 134972 135283 -282058381 + AluY SINE Alu 1 311 0 314 311 0 19 chr1 135678 135784 -282057880 + MER65-int LTR ERV1 2417 2520 -3811 253 271 0 0 chr1 135941 136000 -282057664 + MER65-int LTR ERV1 733 791 -4080 1830 115 11 7 chr1 136014 136301 -282057363 - AluY SINE Alu -23 288 1 304 26 0 0 chr1 136302 136341 -282057323 + HERVK9 LTR ERVK 5763 5801 -115 * 2090 120 3 6 chr1 136336 136661 -282057003 - HERVK9 LTR ERVK -1010 4906 4583 1886 30 0 0 chr1 136662 136892 -282056772 - HERVK9 LTR ERVK -1976 3940 3711 11634 63 9 2 chr1 136892 138410 -282055254 - HERVK9 LTR ERVK -3130 2786 1259 4515 58 8 3 chr1 138402 138991 -282054673 - HERVK9 LTR ERVK -5324 592 1 * 3816 86 24 4 chr1 138991 139492 -282054172 - MER9 LTR ERVK 0 511 1 2527 39 0 7 chr1 139814 140120 -282053544 - AluY SINE Alu -7 304 1 300 102 0 85 chr1 140463 140522 -282053142 + Charlie8 DNA MER1_type 103 156 -2261 2219 183 136 66 chr1 141003 141730 -282051934 + L1MC3 LINE L1 7001 7778 -7 1779 167 0 3 chr1 141734 142034 -282051630 + AluJb SINE Alu 1 299 -13 464 254 176 5 chr1 142155 142348 -282051316 - MER67A LTR ERV1 -317 226 1 225 264 271 0 chr1 142464 142593 -282051071 - L2 LINE L2 -5 3267 3104 2056 70 45 7 chr1 143294 143581 -282050083 + AluSq SINE Alu 1 298 -15 692 212 72 14 chr1 143762 144067 -282049597 - MLT1B LTR MaLR -17 373 16 869 236 39 19 chr1 144174 144432 -282049232 + MLT1A2 LTR MaLR 80 342 -32 457 166 12 0 chr1 144432 144519 -282049145 + MER2 DNA MER2_type 1 87 -152 440 312 70 10 chr1 146461 146660 -282047004 + L2 LINE L2 3059 3269 -44 203 152 22 0 chr1 152374 152420 -282041244 + GA-rich Low_complexity Low_complexity 1 47 0 22 35 0 0 chr1 153180 153209 -282040455 + GC_rich Low_complexity Low_complexity 1 29 0 2307 60 17 0 chr1 154441 154741 -282038923 - AluSp SINE Alu -8 305 1 2383 63 3 3 chr1 158274 158576 -282035088 + AluY SINE Alu 1 302 -9 37 23 0 0 chr1 160495 160539 -282033125 + GC_rich Low_complexity Low_complexity 1 44 0 24 32 0 0 chr1 160557 160588 -282033076 + GC_rich Low_complexity Low_complexity 1 31 0 21 0 0 0 chr1 162906 162927 -282030737 + GC_rich Low_complexity Low_complexity 1 21 0 208 282 26 0 chr1 166242 166320 -282027344 + GA-rich Low_complexity Low_complexity 2 81 0 534 258 94 0 chr1 166424 166583 -282027081 - MIR SINE MIR -29 233 60 234 169 80 0 chr1 169451 169529 -282024135 + MLT1B LTR MaLR 287 452 -15 598 146 0 38 chr1 170042 170200 -282023464 + (GGGA)n Simple_repeat Simple_repeat 3 154 0 696 149 50 25 chr1 170580 170701 -282022963 + FLAM_A SINE Alu 13 136 -6 196 224 134 0 chr1 170859 170926 -282022738 + L2 LINE L2 1715 1790 -1524 201 222 0 0 chr1 171180 171243 -282022421 + (CA)n Simple_repeat Simple_repeat 1 63 0 194 105 26 0 chr1 171578 171616 -282022048 + G-rich Low_complexity Low_complexity 3 41 0 349 314 0 0 chr1 174564 174666 -282018998 + (CA)n Simple_repeat Simple_repeat 2 103 0 554 173 0 53 chr1 177539 177672 -282015992 - L1M4 LINE L1 -1286 4860 4735 2057 98 20 7 chr1 177688 177983 -282015681 - AluSx SINE Alu -13 299 1 265 175 88 0 chr1 185973 186030 -282007634 + MIR SINE MIR 79 140 -122 347 277 0 18 chr1 186589 186701 -282006963 + (CA)n Simple_repeat Simple_repeat 2 111 0 186 236 0 0 chr1 186715 186770 -282006894 + (CA)n Simple_repeat Simple_repeat 1 55 0 461 320 6 6 chr1 186784 187021 -282006643 + (CA)n Simple_repeat Simple_repeat 1 237 0 231 244 90 0 chr1 189284 189362 -282004302 - MER53 DNA DNA -83 106 22 382 153 45 18 chr1 189944 190055 -282003609 + CT-rich Low_complexity Low_complexity 4 117 0 297 289 0 11 chr1 192072 192162 -282001502 + (CGTG)n Simple_repeat Simple_repeat 1 89 0 265 235 12 19 chr1 192176 192338 -282001326 + (TG)n Simple_repeat Simple_repeat 1 161 0 1865 137 0 7 chr1 192605 192890 -282000774 + AluJo SINE Alu 5 287 -25 2129 121 3 6 chr1 193050 193363 -282000301 + AluSx SINE Alu 1 312 0 2133 110 10 0 chr1 193386 193686 -281999978 + AluSx SINE Alu 1 303 -9 24 0 0 0 chr1 194775 194799 -281998865 + GC_rich Low_complexity Low_complexity 1 24 0 1895 113 60 0 chr1 195477 195759 -281997905 - AluSg SINE Alu -4 306 8 213 258 113 80 chr1 195861 196012 -281997652 - L2 LINE L2 -911 2403 2248 2012 93 13 7 chr1 196355 196655 -281997009 - AluSq SINE Alu -11 302 1 1029 178 53 0 chr1 196660 196924 -281996740 + L1M4 LINE L1 4897 5174 -972 2081 141 0 0 chr1 197001 197307 -281996357 + AluSx SINE Alu 1 306 -6 803 123 0 8 chr1 200797 200927 -281992737 - FLAM_C SINE Alu -4 139 11 240 208 104 26 chr1 200960 201030 -281992634 + MIR SINE MIR 73 151 -111 1496 86 62 5 chr1 201030 201239 -281992425 - AluSg/x SINE Alu -10 300 80 2093 114 7 0 chr1 201255 201554 -281992110 - AluSp SINE Alu -12 301 1 259 213 0 0 chr1 201991 202038 -281991626 + MLT1G1 LTR MaLR 4 50 -545 388 229 63 80 chr1 202112 202287 -281991377 + MLT1G1 LTR MaLR 182 353 -242 375 221 88 27 chr1 204048 204209 -281989455 - MLT1H LTR MaLR -294 255 48 304 308 29 0 chr1 206598 206702 -281986962 - L1ME LINE L1 -408 5762 5656 1590 126 11 11 chr1 206958 207221 -281986443 - AluSp SINE Alu -7 306 44 1085 162 10 10 chr1 208075 208317 -281985347 - AluJb SINE Alu 0 312 116 192 125 0 0 chr1 208355 208387 -281985277 + (TCTA)n Simple_repeat Simple_repeat 3 34 0 1855 100 15 15 chr1 208388 208659 -281985005 - AluSx SINE Alu -27 285 15 737 175 80 69 chr1 209534 209686 -281983978 - L1M4 LINE L1 -879 5267 5109 1662 214 112 0 chr1 209686 210042 -281983622 - MSTD LTR MaLR 0 396 1 737 175 80 69 chr1 210042 210163 -281983501 - L1M4 LINE L1 -1037 5109 4991 2279 93 0 6 chr1 210163 210475 -281983189 - AluSx SINE Alu -2 310 1 2189 79 7 3 chr1 210476 210768 -281982896 - AluY SINE Alu -18 293 1 275 225 50 88 chr1 211005 211205 -281982459 - L1M4 LINE L1 -3733 2413 2222 2248 99 3 3 chr1 211219 211531 -281982133 - AluSq SINE Alu 0 313 2 1256 143 9 0 chr1 211532 211742 -281981922 - AluJb SINE Alu -9 303 92 295 194 23 63 chr1 212058 212233 -281981431 + (TG)n Simple_repeat Simple_repeat 1 168 0 313 172 23 69 chr1 212343 212517 -281981147 + (TG)n Simple_repeat Simple_repeat 1 166 0 180 0 0 0 chr1 212543 212563 -281981101 + (TG)n Simple_repeat Simple_repeat 1 20 0 276 189 23 69 chr1 212622 212797 -281980867 + (TG)n Simple_repeat Simple_repeat 1 167 0 209 115 35 46 chr1 212826 212913 -281980751 + (TG)n Simple_repeat Simple_repeat 1 86 0 293 207 29 52 chr1 212926 213100 -281980564 + (TG)n Simple_repeat Simple_repeat 1 170 0 2361 47 7 10 chr1 215557 215856 -281977808 - AluY SINE Alu -10 301 4 2095 117 0 13 chr1 215859 216159 -281977505 - AluSg SINE Alu -14 296 1 923 112 15 0 chr1 216159 216293 -281977371 - AluSq/x SINE Alu -176 136 1 1804 119 0 4 chr1 216348 216474 -281977190 - AluSx SINE Alu -53 259 134 1851 122 48 7 chr1 216474 216768 -281976896 - AluSg SINE Alu 0 310 5 1804 119 0 4 chr1 216768 216901 -281976763 - AluSx SINE Alu -178 134 1 353 73 36 0 chr1 216911 216966 -281976698 - Alu SINE Alu -8 294 238 4943 96 38 67 chr1 216969 217890 -281975774 - pTR5 LTR ERV1 0 2438 1545 219 219 0 55 chr1 219124 219197 -281974467 + G-rich Low_complexity Low_complexity 1 69 0 1163 180 8 25 chr1 222036 222281 -281971383 - MSTA LTR MaLR -187 241 1 832 293 77 37 chr1 223150 223227 -281970437 + L1MEc LINE L1 886 958 -5438 402 204 326 0 chr1 223227 223325 -281970339 + FLAM_A SINE Alu 2 131 -2 832 293 77 37 chr1 223325 223552 -281970112 + L1MEc LINE L1 958 1216 -5180 2082 108 3 44 chr1 223552 223891 -281969773 + AluSx SINE Alu 1 312 0 832 293 77 37 chr1 223891 224039 -281969625 + L1MEc LINE L1 1216 1357 -5039 696 230 81 53 chr1 224106 224196 -281969468 + L1MB5 LINE L1 4078 4164 -1982 2117 107 7 10 chr1 224196 224523 -281969141 + AluSp SINE Alu 1 313 0 1698 169 0 48 chr1 224532 224846 -281968818 + AluJb SINE Alu 1 299 -13 696 230 81 53 chr1 224846 225028 -281968636 + L1MB5 LINE L1 4171 4368 -1778 359 190 58 29 chr1 228894 229068 -281964596 + (CGGG)n Simple_repeat Simple_repeat 2 180 0 420 281 117 15 chr1 229603 229799 -281963865 + L1MB5 LINE L1 5451 5666 -512 852 234 35 0 chr1 229906 230137 -281963527 + L1MB5 LINE L1 5928 6166 -8 292 205 12 48 chr1 230827 230910 -281962754 - HERV16 LTR ERVL -4568 428 349 436 200 0 0 chr1 231524 231604 -281962060 + AluJ/FRAM SINE Alu 217 296 -16 2104 132 0 7 chr1 231606 231916 -281961748 + AluSx SINE Alu 1 308 -4 180 260 67 96 chr1 232408 232512 -281961152 + L2 LINE L2 3120 3220 -93 1694 128 10 24 chr1 232963 233253 -281960411 - AluJb SINE Alu 0 312 27 2035 108 10 3 chr1 233259 233547 -281960117 - AluSx SINE Alu -19 293 4 219 57 0 75 chr1 233674 233727 -281959937 + (TTTA)n Simple_repeat Simple_repeat 3 51 0 2345 80 6 10 chr1 233925 234238 -281959426 - AluSx SINE Alu 0 312 1 1109 189 148 33 chr1 234251 234521 -281959143 - AluSq SINE Alu -2 301 1 2950 218 70 36 chr1 234605 235254 -281958410 - L1MB5 LINE L1 0 6174 5475 2126 106 6 16 chr1 235254 235565 -281958099 - AluSx SINE Alu -4 308 1 2950 218 70 36 chr1 235565 235873 -281957791 - L1MB5 LINE L1 -699 5475 5179 1865 139 3 13 chr1 235936 236246 -281957418 + AluJb SINE Alu 3 309 -3 1797 91 0 4 chr1 437967 438209 -281755455 + AluSc SINE Alu 63 303 -6 457 258 24 0 chr1 438300 438424 -281755240 + MER66-int LTR ERV1 213 339 -6337 286 175 35 0 chr1 438569 438626 -281755038 - AluSp/q SINE Alu -5 298 240 1400 84 0 0 chr1 438627 438806 -281754858 - AluY SINE Alu -132 179 1 442 172 108 0 chr1 438840 438933 -281754731 - MER66A LTR ERV1 0 478 376 760 233 11 23 chr1 438933 439109 -281754555 - AluSq SINE Alu -3 310 137 1919 112 22 0 chr1 439124 439393 -281754271 - AluSx SINE Alu -37 275 1 445 298 45 20 chr1 439420 439618 -281754046 - MER66B LTR ERV1 -142 344 142 2040 94 43 0 chr1 442118 442395 -281751269 - AluSx SINE Alu -23 289 1 1350 164 98 0 chr1 442416 442529 -281751135 - AluJo SINE Alu -44 268 168 2559 38 0 22 chr1 442529 442847 -281750817 - AluY SINE Alu 0 311 1 1350 164 98 0 chr1 442847 442977 -281750687 - AluJo SINE Alu -144 168 1 312 61 41 0 chr1 442977 443026 -281750638 - AluJo SINE Alu -167 135 85 1599 120 43 0 chr1 443101 443335 -281750329 - AluSx SINE Alu -68 244 1 935 74 0 0 chr1 443852 443973 -281749691 + AluSg/x SINE Alu 184 304 -8 1732 122 26 51 chr1 443974 444286 -281749378 + AluSx SINE Alu 2 305 -7 353 231 136 0 chr1 444513 444682 -281748982 - MER63 DNA MER1_type -45 1017 826 240 265 0 15 chr1 444761 444804 -281748860 - AluJo SINE Alu -123 179 136 1895 128 0 52 chr1 444804 445110 -281748554 - AluSx SINE Alu -22 290 1 240 265 0 15 chr1 445110 445134 -281748530 - AluJo SINE Alu -166 136 113 2263 91 13 0 chr1 446449 446757 -281746907 - AluSx SINE Alu 0 312 1 2090 117 0 0 chr1 449452 449743 -281743921 - AluSx SINE Alu -21 291 1 414 142 142 19 chr1 450722 450828 -281742836 + MER20 DNA MER1_type 53 171 -48 2164 111 3 0 chr1 451886 452183 -281741481 - AluSg SINE Alu -12 298 1 309 243 70 119 chr1 452335 452361 -281741303 - HAL1 LINE L1 -2 2505 2479 2352 61 3 0 chr1 452361 452654 -281741010 + AluY SINE Alu 1 294 -17 309 243 70 119 chr1 452654 452699 -281740965 - HAL1 LINE L1 -28 2479 2433 1620 169 35 0 chr1 452699 452983 -281740681 + AluJo SINE Alu 4 297 -15 309 243 70 119 chr1 452983 453003 -281740661 - HAL1 LINE L1 -74 2433 2414 2162 88 10 7 chr1 453003 453298 -281740366 + AluY SINE Alu 1 296 -15 309 243 70 119 chr1 453298 453389 -281740275 - HAL1 LINE L1 -93 2414 2330 2239 97 3 0 chr1 453405 453703 -281739961 - AluSx SINE Alu -13 299 1 1628 149 57 7 chr1 453710 453992 -281739672 - AluJo SINE Alu -16 296 1 1018 157 17 0 chr1 454228 454406 -281739258 + AluJb SINE Alu 120 300 -12 2274 90 0 0 chr1 454406 454707 -281738957 + AluY SINE Alu 1 301 -10 255 261 85 24 chr1 454798 454963 -281738701 + (CTCA)n Simple_repeat Simple_repeat 4 178 0 379 243 47 24 chr1 454984 455233 -281738431 + (CTCA)n Simple_repeat Simple_repeat 1 254 0 255 318 6 11 chr1 455263 455439 -281738225 + (CA)n Simple_repeat Simple_repeat 1 175 0 * 378 268 36 40 chr1 455341 455684 -281737980 + (CTCA)n Simple_repeat Simple_repeat 1 341 0 437 256 64 21 chr1 455761 456102 -281737562 + (CTCA)n Simple_repeat Simple_repeat 1 355 0 332 339 0 0 chr1 456039 456207 -281737457 + (CA)n Simple_repeat Simple_repeat 1 168 0 * 431 266 40 29 chr1 456149 456322 -281737342 + (CTCA)n Simple_repeat Simple_repeat 4 178 0 285 204 57 45 chr1 456504 456580 -281737084 - AluJb SINE Alu -89 213 139 1621 155 13 44 chr1 456580 456761 -281736903 - AluJo SINE Alu -6 306 121 2158 113 7 0 chr1 456761 457071 -281736593 - AluSp SINE Alu -1 312 1 2145 105 16 3 chr1 457071 457376 -281736288 - AluSp SINE Alu -4 309 1 1988 128 0 3 chr1 457376 457657 -281736007 - AluSx SINE Alu -18 294 14 1621 155 13 44 chr1 457657 457789 -281735875 - AluJo SINE Alu -188 124 1 285 204 57 45 chr1 457789 457800 -281735864 - AluJb SINE Alu -163 139 125 1937 116 10 20 chr1 458095 458226 -281735438 + AluSq SINE Alu 4 135 -178 2360 88 0 0 chr1 458226 458522 -281735142 + AluSg SINE Alu 2 297 -13 2324 76 0 10 chr1 458522 458822 -281734842 + AluY SINE Alu 1 298 -13 1937 116 10 20 chr1 458822 458992 -281734672 + AluSq SINE Alu 133 303 -10 650 159 68 38 chr1 458993 459125 -281734539 + FRAM SINE Alu 9 144 -32 1393 128 0 0 chr1 459126 459322 -281734342 - AluSg/x SINE Alu -15 295 100 2258 94 0 3 chr1 459325 459622 -281734042 - AluSc SINE Alu -13 296 1 2300 96 0 3 chr1 459623 459926 -281733738 - AluSx SINE Alu -10 302 1 243 304 78 10 chr1 461032 461134 -281732530 + L2 LINE L2 3158 3266 -6 184 264 6 6 chr1 461193 461352 -281732312 + (TG)n Simple_repeat Simple_repeat 2 160 0 288 273 0 0 chr1 461397 461573 -281732091 + (TG)n Simple_repeat Simple_repeat 1 176 0 1029 211 127 24 chr1 464533 464607 -281729057 + MER54A LTR ERVL 489 554 -347 1857 128 10 14 chr1 464607 464897 -281728767 - AluSq SINE Alu -22 291 3 1029 211 127 24 chr1 464897 465191 -281728473 + MER54A LTR ERVL 554 895 -6 189 0 0 0 chr1 465779 465800 -281727864 + (GGCTG)n Simple_repeat Simple_repeat 1 21 0 190 324 14 0 chr1 466846 466920 -281726744 + MIR SINE MIR 56 130 -132 180 111 0 0 chr1 471419 471446 -281722218 + (TG)n Simple_repeat Simple_repeat 1 27 0 394 333 11 11 chr1 471519 471696 -281721968 + (TG)n Simple_repeat Simple_repeat 1 177 0 296 286 4 18 chr1 471753 472031 -281721633 + (TG)n Simple_repeat Simple_repeat 1 273 0 255 258 0 38 chr1 472036 472222 -281721442 + (CGTG)n Simple_repeat Simple_repeat 1 179 0 201 188 0 80 chr1 475042 475154 -281718510 + (CCGCT)n Simple_repeat Simple_repeat 3 105 0 202 260 0 52 chr1 479172 479268 -281714396 + (CAGGG)n Simple_repeat Simple_repeat 5 95 0 1300 96 15 20 chr1 481358 481555 -281712109 + AluSg/x SINE Alu 108 303 -7 562 189 78 20 chr1 481589 481742 -281711922 - L1MC4a LINE L1 -1260 6548 6387 25 31 0 0 chr1 481998 482030 -281711634 + GC_rich Low_complexity Low_complexity 1 32 0 21 82 0 0 chr1 482160 482209 -281711455 + GC_rich Low_complexity Low_complexity 1 49 0 245 146 31 73 chr1 482362 482458 -281711206 + C-rich Low_complexity Low_complexity 5 96 0 359 306 41 0 chr1 486143 486313 -281707351 + C-rich Low_complexity Low_complexity 3 179 0 300 247 45 45 chr1 486305 486483 -281707181 + (CCCCG)n Simple_repeat Simple_repeat 2 179 0 * 383 293 43 0 chr1 486389 486553 -281707111 + C-rich Low_complexity Low_complexity 3 173 0 349 301 43 0 chr1 486589 486752 -281706912 + C-rich Low_complexity Low_complexity 4 173 0 350 308 41 0 chr1 486783 486952 -281706712 + C-rich Low_complexity Low_complexity 4 179 0 291 222 11 83 chr1 487001 487181 -281706483 + CT-rich Low_complexity Low_complexity 1 167 0 * 343 317 37 0 chr1 487178 487342 -281706322 + C-rich Low_complexity Low_complexity 3 172 0 205 284 40 47 chr1 489248 489396 -281704268 + (CACG)n Simple_repeat Simple_repeat 4 150 0 234 261 6 68 chr1 489644 489820 -281703844 + (CA)n Simple_repeat Simple_repeat 1 165 0 209 60 40 40 chr1 494649 494699 -281698965 + (CCCCCG)n Simple_repeat Simple_repeat 4 53 0 305 106 211 7 chr1 495274 495416 -281698248 + (CAGCC)n Simple_repeat Simple_repeat 4 174 0 249 143 175 13 chr1 495436 495590 -281698074 + (CAGCC)n Simple_repeat Simple_repeat 1 179 0 1774 147 7 20 chr1 495746 496038 -281697626 + AluJo SINE Alu 3 290 -22 316 349 0 0 chr1 496694 496843 -281696821 + C-rich Low_complexity Low_complexity 1 149 0 229 113 0 38 chr1 496988 497041 -281696623 + (TCCCC)n Simple_repeat Simple_repeat 5 55 0 214 236 64 27 chr1 497450 497560 -281696104 - L2 LINE L2 -26 3246 3133 300 331 120 38 chr1 499703 499969 -281693695 + L2 LINE L2 3006 3293 -20 575 315 89 78 chr1 500748 500914 -281692750 - L1MEc LINE L1 -3603 2612 2449 1445 150 66 31 chr1 500914 501200 -281692464 - AluJb SINE Alu -15 297 2 575 315 89 78 chr1 501200 501407 -281692257 - L1MEc LINE L1 -3766 2449 2246 2247 39 3 43 chr1 501407 501712 -281691952 + AluY SINE Alu 1 293 -18 575 315 89 78 chr1 501712 501988 -281691676 - L1MEc LINE L1 -3969 2246 1390 2189 86 6 22 chr1 502155 502468 -281691196 - AluSq SINE Alu -5 308 1 737 104 104 49 chr1 502482 502626 -281691038 + FRAM SINE Alu 1 146 -30 2334 83 3 0 chr1 502630 502932 -281690732 - AluSx SINE Alu -8 304 2 1979 121 24 17 chr1 502971 503269 -281690395 - AluSq SINE Alu -13 300 1 1678 145 0 0 chr1 503274 503522 -281690142 - AluSx SINE Alu -10 302 55 187 176 0 54 chr1 503890 503964 -281689700 + C-rich Low_complexity Low_complexity 2 71 0 25 0 0 0 chr1 507441 507466 -281686198 + GC_rich Low_complexity Low_complexity 1 25 0 26 30 0 0 chr1 511097 511130 -281682534 + GC_rich Low_complexity Low_complexity 1 33 0 27 49 0 0 chr1 511446 511487 -281682177 + GC_rich Low_complexity Low_complexity 1 41 0 24 0 0 0 chr1 511601 511625 -281682039 + GC_rich Low_complexity Low_complexity 1 24 0 245 222 28 19 chr1 511705 511813 -281681851 + (CGCGG)n Simple_repeat Simple_repeat 4 112 0 23 0 0 0 chr1 512018 512041 -281681623 + GC_rich Low_complexity Low_complexity 1 23 0 27 0 0 0 chr1 512100 512127 -281681537 + GC_rich Low_complexity Low_complexity 1 27 0 212 329 12 0 chr1 513031 513116 -281680548 + (TG)n Simple_repeat Simple_repeat 1 86 0 189 238 48 60 chr1 518005 518089 -281675575 - L2 LINE L2 -1002 2312 2230 1652 148 36 26 chr1 518224 518527 -281675137 + AluJo SINE Alu 1 306 -6 976 161 0 40 chr1 518540 518714 -281674950 + AluJb SINE Alu 128 294 -18 2133 103 17 0 chr1 518717 519019 -281674645 + AluSp SINE Alu 1 307 -6 264 325 26 13 chr1 522880 523031 -281670633 + (CGTG)n Simple_repeat Simple_repeat 4 156 0 211 235 12 37 chr1 525698 525779 -281667885 + (CCCCG)n Simple_repeat Simple_repeat 1 79 0 213 65 0 0 chr1 525791 525822 -281667842 + (CCCCG)n Simple_repeat Simple_repeat 4 34 0 202 183 0 84 chr1 525991 526062 -281667602 + G-rich Low_complexity Low_complexity 4 68 0 276 325 0 38 chr1 529516 529673 -281663991 + G-rich Low_complexity Low_complexity 5 155 0 279 116 52 64 chr1 529673 529845 -281663819 + (CAGAGA)n Simple_repeat Simple_repeat 1 170 0 280 125 56 56 chr1 529902 530227 -281663437 + (CAGAGA)n Simple_repeat Simple_repeat 1 325 0 207 122 58 70 chr1 530275 530447 -281663217 + (CAGAGA)n Simple_repeat Simple_repeat 1 170 0 180 77 0 0 chr1 532671 532697 -281660967 + (TGG)n Simple_repeat Simple_repeat 2 27 0 2157 119 3 0 chr1 534665 534968 -281658696 - AluSp SINE Alu -9 304 1 2448 57 0 0 chr1 535335 535632 -281658032 + AluY SINE Alu 3 299 -12 298 257 86 9 chr1 536127 536232 -281657432 + MIR SINE MIR 33 145 -117 1517 163 62 0 chr1 537596 537902 -281655762 + MER4B LTR ERV1 3 327 -283 2427 57 7 0 chr1 537902 538202 -281655462 - AluY SINE Alu -9 302 1 1010 80 0 29 chr1 538202 538340 -281655324 - AluSc SINE Alu -175 134 1 2551 152 14 42 chr1 538392 538684 -281654980 + MER4B-int LTR ERV1 238 512 -6246 2515 50 0 0 chr1 538684 538984 -281654680 + AluY SINE Alu 2 301 -10 2551 152 14 42 chr1 538984 539191 -281654473 + MER4B-int LTR ERV1 512 723 -6035 2504 163 60 88 chr1 539294 539592 -281654072 + MER4B-int LTR ERV1 698 1003 -5755 2204 112 0 0 chr1 539592 539896 -281653768 + AluSq SINE Alu 1 304 -9 2504 163 60 88 chr1 539896 539963 -281653701 + MER4B-int LTR ERV1 1003 1070 -5688 2021 139 0 0 chr1 539963 540258 -281653406 - AluSx SINE Alu -17 295 1 2504 163 60 88 chr1 540258 540541 -281653123 + MER4B-int LTR ERV1 1070 1359 -5399 2361 58 0 3 chr1 540541 540836 -281652828 - AluY SINE Alu -17 294 1 2504 163 60 88 chr1 540836 540963 -281652701 + MER4B-int LTR ERV1 1359 1488 -5270 2108 119 0 3 chr1 540963 541258 -281652406 + AluSx SINE Alu 1 294 -18 2504 163 60 88 chr1 541258 541606 -281652058 + MER4B-int LTR ERV1 1488 2256 -4502 2097 117 3 0 chr1 541610 541900 -281651764 + AluSx SINE Alu 4 294 -18 1263 164 9 0 chr1 541903 542129 -281651535 + MER4B-int LTR ERV1 6531 6758 0 2513 162 109 17 chr1 542129 542672 -281650992 + MER4B LTR ERV1 1 593 -17 22 0 0 0 chr1 544381 544403 -281649261 + GC_rich Low_complexity Low_complexity 1 22 0 30 0 0 0 chr1 544833 544863 -281648801 + GC_rich Low_complexity Low_complexity 1 30 0 983 162 29 17 chr1 546223 546380 -281647284 - AluSq SINE Alu -18 295 134 2341 99 3 0 chr1 546380 546692 -281646972 - AluSp SINE Alu 0 313 1 983 162 29 17 chr1 546692 546707 -281646957 - AluSq SINE Alu -179 134 121 2045 155 50 11 chr1 548134 548495 -281645169 - THE1C LTR MaLR 0 375 1 2212 98 0 13 chr1 548621 548927 -281644737 + AluSq SINE Alu 1 302 -11 1531 163 78 0 chr1 549419 549689 -281643975 + AluJb SINE Alu 12 302 -10 2256 81 0 0 chr1 551196 551504 -281642160 + AluSq SINE Alu 1 308 0 2214 80 7 20 chr1 551545 551845 -281641819 - AluY SINE Alu -15 296 1 856 89 0 0 chr1 551845 551957 -281641707 - AluSx SINE Alu -16 294 183 904 102 0 0 chr1 551957 552075 -281641589 - AluSx SINE Alu -195 118 1 2027 97 0 25 chr1 552454 552733 -281640931 + AluSc SINE Alu 3 274 -35 547 67 22 0 chr1 552735 552824 -281640840 + (CA)n Simple_repeat Simple_repeat 1 91 0 590 184 34 101 chr1 552875 553082 -281640582 - MER68 LTR ERV1 -211 351 159 1983 116 0 0 chr1 553496 553763 -281639901 - AluSx SINE Alu -45 267 1 1037 110 0 0 chr1 553763 553899 -281639765 - AluSq/x SINE Alu -177 136 1 1624 168 11 0 chr1 554387 554655 -281639009 - AluJo SINE Alu -19 293 23 2190 83 4 0 chr1 556232 556508 -281637156 + AluSp SINE Alu 1 277 -36 1464 90 24 14 chr1 556508 556720 -281636944 + AluY SINE Alu 68 281 -30 256 289 41 41 chr1 557207 557328 -281636336 + L2 LINE L2 1879 1999 -1315 794 218 45 1 chr1 558480 558842 -281634822 + MER54A LTR ERVL 489 895 -6 291 313 0 87 chr1 559002 559197 -281634467 + (CACG)n Simple_repeat Simple_repeat 1 178 0 376 289 12 36 chr1 559211 559377 -281634287 + (CACG)n Simple_repeat Simple_repeat 4 165 0 270 284 60 17 chr1 559546 559662 -281634002 - L2 LINE L2 -704 2610 2490 2455 35 6 19 chr1 560669 560980 -281632684 - AluY SINE Alu -4 307 1 768 287 0 0 chr1 563681 563817 -281629847 + C-rich Low_complexity Low_complexity 1 136 0 402 381 94 18 chr1 563820 564106 -281629558 - HAL1 LINE L1 -1306 1201 894 307 163 9 9 chr1 564699 564781 -281628883 - FLAM SINE Alu 0 133 58 2051 115 10 0 chr1 565018 565313 -281628351 + AluSx SINE Alu 1 298 -14 268 234 52 39 chr1 565481 565558 -281628106 - L2 LINE L2 -16 3256 3179 217 306 12 35 chr1 565650 565735 -281627929 - L2 LINE L2 -912 2402 2320 248 243 14 14 chr1 565834 565908 -281627756 + (TG)n Simple_repeat Simple_repeat 1 74 0 202 382 34 0 chr1 565991 566080 -281627584 - MIR SINE MIR -118 144 53 1604 134 12 78 chr1 566264 566585 -281627079 + AluJo SINE Alu 1 300 -12 217 320 0 29 chr1 568317 568489 -281625175 + (CCCG)n Simple_repeat Simple_repeat 3 169 0 629 257 27 9 chr1 569203 569425 -281624239 - L1MC3 LINE L1 -240 7545 7320 267 309 65 22 chr1 569551 569690 -281623974 - L1MC3 LINE L1 -936 6849 6705 225 198 79 8 chr1 569971 570097 -281623567 + (TG)n Simple_repeat Simple_repeat 1 135 0 301 226 71 0 chr1 570518 570602 -281623062 - MSTD LTR MaLR -291 105 16 1568 193 10 10 chr1 570850 571151 -281622513 - AluJb SINE Alu -11 301 1 2141 114 3 0 chr1 571202 571499 -281622165 + AluSx SINE Alu 1 298 -14 366 266 93 103 chr1 575164 575476 -281618188 + HAL1 LINE L1 985 1293 -1214 460 237 171 13 chr1 580253 580481 -281613183 - MLT1C LTR MaLR -203 264 1 221 292 62 31 chr1 581460 581556 -281612108 + MIR SINE MIR 34 132 -76 1473 154 67 4 chr1 584436 584703 -281608961 + AluJb SINE Alu 2 285 -27 1752 161 0 32 chr1 584728 584814 -281608850 - AluJb SINE Alu -11 301 214 6627 102 25 13 chr1 584814 585756 -281607908 - LTR13 LTR ERVK 0 954 1 1752 161 0 32 chr1 585756 585980 -281607684 - AluJb SINE Alu -98 214 1 638 89 0 30 chr1 585991 586092 -281607572 - AluSg/x SINE Alu -14 298 201 337 222 7 37 chr1 586369 586646 -281607018 + (TG)n Simple_repeat Simple_repeat 1 268 0 1398 213 45 0 chr1 587606 587893 -281605771 - AluJb SINE Alu -12 300 1 572 141 16 55 chr1 587901 588029 -281605635 - AluJb SINE Alu -1 311 189 730 206 32 74 chr1 588107 588296 -281605368 - AluJb SINE Alu -128 184 4 597 200 0 0 chr1 588489 588599 -281605065 - FLAM_C SINE Alu -33 110 1 29 0 0 0 chr1 592060 592089 -281601575 + GC_rich Low_complexity Low_complexity 1 29 0 293 204 157 0 chr1 594566 594661 -281599003 - MLT1B LTR MaLR -270 104 3 2086 108 10 0 chr1 594709 595005 -281598659 - AluSx SINE Alu -13 299 1 24 32 0 0 chr1 597772 597803 -281595861 + GC_rich Low_complexity Low_complexity 1 31 0 208 232 0 71 chr1 598229 598341 -281595323 + G-rich Low_complexity Low_complexity 1 104 0 243 261 159 23 chr1 599199 599287 -281594377 - L2 LINE L2 -4 3309 3210 404 292 134 38 chr1 599329 599538 -281594126 + L1M4 LINE L1 166 394 -6148 1249 173 4 27 chr1 599553 599687 -281593977 + AluJo SINE Alu 1 130 -182 1775 158 10 7 chr1 599687 599978 -281593686 + AluJo SINE Alu 1 292 -20 1249 173 4 27 chr1 599978 600068 -281593596 + AluJo SINE Alu 130 220 -92 278 106 0 0 chr1 600069 600116 -281593548 + AluSg/x SINE Alu 85 131 -169 1967 266 94 79 chr1 600122 600336 -281593328 + L1M4 LINE L1 1231 1440 -5204 1654 164 30 10 chr1 600336 600640 -281593024 + AluSx SINE Alu 1 310 -2 1967 266 94 79 chr1 600640 601455 -281592209 + L1M4 LINE L1 1440 2241 -4403 1506 208 17 10 chr1 601455 601743 -281591921 - AluJb SINE Alu -18 294 5 1967 266 94 79 chr1 601743 602095 -281591569 + L1M4 LINE L1 2241 2646 -3998 2297 83 3 0 chr1 602095 602396 -281591268 - AluY SINE Alu -9 302 1 1967 266 94 79 chr1 602396 602599 -281591065 + L1M4 LINE L1 2646 2844 -3800 2427 197 92 87 chr1 603057 603332 -281590332 + L1M4 LINE L1 2820 3092 -3552 3765 103 4 10 chr1 603332 603846 -281589818 + MER9 LTR ERVK 1 511 0 2427 197 92 87 chr1 603846 604000 -281589664 + L1M4 LINE L1 3092 3244 -3400 764 206 0 0 chr1 604000 604126 -281589538 - FLAM_A SINE Alu -3 130 5 2427 197 92 87 chr1 604126 604321 -281589343 + L1M4 LINE L1 3244 3436 -3208 2137 92 33 13 chr1 604321 604625 -281589039 + AluSq SINE Alu 1 310 -3 2427 197 92 87 chr1 604625 604785 -281588879 + L1M4 LINE L1 3436 3594 -3050 1621 126 0 8 chr1 604785 605023 -281588641 + AluSg/x SINE Alu 73 308 -2 2427 197 92 87 chr1 605023 605310 -281588354 + L1M4 LINE L1 3594 3900 -2744 2001 42 0 0 chr1 605310 605549 -281588115 - AluY SINE Alu -11 300 62 183 351 18 0 chr1 605974 606031 -281587633 - L2 LINE L2 -6 3307 3250 2099 89 0 20 chr1 610302 610594 -281583070 + AluSx SINE Alu 10 295 -17 1392 162 4 4 chr1 612027 612256 -281581408 - AluJo SINE Alu -83 229 1 1999 125 16 0 chr1 612291 612595 -281581069 + AluSx SINE Alu 1 309 -3 1182 114 17 0 chr1 621516 621692 -281571972 + AluJb SINE Alu 3 181 -131 2352 97 3 0 chr1 622920 623230 -281570434 + AluSq SINE Alu 2 312 -1 2236 68 4 0 chr1 623381 623660 -281570004 - AluY SINE Alu -31 280 1 606 258 76 28 chr1 624577 624931 -281568733 - MLT1B LTR MaLR 0 374 18 183 213 197 8 chr1 628698 628820 -281564844 + L2 LINE L2 2002 2146 -1168 238 203 7 115 chr1 630317 630465 -281563199 + (CAGGT)n Simple_repeat Simple_repeat 2 133 0 2276 96 0 0 chr1 636447 636748 -281556916 - AluSx SINE Alu -9 303 3 1865 137 0 7 chr1 636907 637192 -281556472 - AluJo SINE Alu -25 287 5 309 221 11 33 chr1 637459 637640 -281556024 + (CA)n Simple_repeat Simple_repeat 1 177 0 298 290 21 0 chr1 637653 637746 -281555918 + (CACG)n Simple_repeat Simple_repeat 3 97 0 280 245 7 7 chr1 637757 637896 -281555768 + (CA)n Simple_repeat Simple_repeat 1 139 0 185 108 27 0 chr1 638230 638267 -281555397 + G-rich Low_complexity Low_complexity 3 40 0 921 103 7 13 chr1 639000 639155 -281554509 + pTR5 LTR ERV1 239 392 -2046 403 71 36 0 chr1 639155 639211 -281554453 + Alu SINE Alu 235 292 -17 1763 127 0 4 chr1 639221 639354 -281554310 + AluSx SINE Alu 1 134 -178 1851 122 48 7 chr1 639354 639648 -281554016 + AluSg SINE Alu 5 310 0 929 150 19 12 chr1 639631 639791 -281553873 + AluJb SINE Alu 118 278 -34 1763 127 0 4 chr1 639648 639774 -281553890 + AluSx SINE Alu 134 259 -53 1012 110 0 0 chr1 639829 639965 -281553699 + AluSq/x SINE Alu 1 136 -176 2100 114 0 13 chr1 639965 640264 -281553400 + AluSg SINE Alu 1 295 -15 2493 33 0 16 chr1 640267 640570 -281553094 + AluY SINE Alu 4 301 -10 1688 149 23 13 chr1 642267 642568 -281551096 - AluJo SINE Alu -7 305 2 855 176 7 7 chr1 643511 643664 -281550000 - FRAM SINE Alu -13 153 1 539 241 134 19 chr1 643993 644209 -281549455 + L1MC/D LINE L1 5500 5740 -502 1948 101 39 26 chr1 644286 644594 -281549070 + AluSx SINE Alu 1 312 0 186 232 130 29 chr1 646610 646679 -281546985 - MIR SINE MIR -80 182 107 208 264 9 36 chr1 647477 647587 -281546077 + (CCCG)n Simple_repeat Simple_repeat 2 108 0 23 78 0 0 chr1 647904 647955 -281545709 + GC_rich Low_complexity Low_complexity 1 51 0 25 0 0 0 chr1 648020 648045 -281545619 + GC_rich Low_complexity Low_complexity 1 25 0 25 65 0 0 chr1 649181 649227 -281544437 + GC_rich Low_complexity Low_complexity 1 46 0 21 0 0 0 chr1 649478 649499 -281544165 + GC_rich Low_complexity Low_complexity 1 21 0 2468 87 0 0 chr1 652071 652382 -281541282 - AluSx SINE Alu -1 311 1 293 67 0 0 chr1 652427 652472 -281541192 + AluSp/q SINE Alu 198 242 -61 200 161 0 0 chr1 652865 652896 -281540768 + G-rich Low_complexity Low_complexity 4 34 0 895 76 111 47 chr1 652951 653123 -281540541 - MER30 DNA MER1_type -47 183 1 21 36 0 0 chr1 653385 653413 -281540251 + GC_rich Low_complexity Low_complexity 1 28 0 228 279 0 0 chr1 666174 666235 -281527429 + G-rich Low_complexity Low_complexity 5 65 0 2108 96 4 0 chr1 666547 666868 -281526796 + AluSq SINE Alu 1 322 0 267 225 50 88 chr1 666873 667073 -281526591 + L1M4 LINE L1 2222 2413 -3733 1251 106 28 0 chr1 667299 667479 -281526185 + AluSg/x SINE Alu 115 299 -13 544 181 0 53 chr1 667495 667628 -281526036 + L1M4 LINE L1 4735 4860 -1286 2275 84 3 0 chr1 670265 670561 -281523103 + AluSg SINE Alu 3 299 -11 209 329 85 0 chr1 671072 671154 -281522510 - MIR SINE MIR -20 242 154 611 204 0 0 chr1 672423 672599 -281521065 + (TG)n Simple_repeat Simple_repeat 1 176 0 273 254 0 0 chr1 672610 672740 -281520924 + (TG)n Simple_repeat Simple_repeat 2 131 0 2154 100 0 0 chr1 672742 673023 -281520641 - AluY SINE Alu -16 295 15 231 148 19 0 chr1 673290 673344 -281520320 + L1MD3 LINE L1 7939 7993 -2 270 315 0 18 chr1 675585 675696 -281517968 + (CCCCG)n Simple_repeat Simple_repeat 2 110 0 236 152 22 0 chr1 677154 677200 -281516464 - MLT1C LTR MaLR -368 99 53 282 270 0 0 chr1 679521 679699 -281513965 + GA-rich Low_complexity Low_complexity 3 180 0 180 281 0 0 chr1 679712 679851 -281513813 + GA-rich Low_complexity Low_complexity 2 140 0 195 100 0 0 chr1 680440 680470 -281513194 + (CGGGG)n Simple_repeat Simple_repeat 1 30 0 2205 97 3 3 chr1 684731 685039 -281508625 - AluSg SINE Alu -2 308 1 488 206 6 24 chr1 688216 688386 -281505278 + G-rich Low_complexity Low_complexity 3 169 0 930 92 7 7 chr1 890028 890170 -281303494 + AluSp/q SINE Alu 169 310 -3 1703 108 13 0 chr1 890223 890455 -281303209 + AluSg SINE Alu 1 235 -75 180 0 0 0 chr1 890455 890475 -281303189 + (A)n Simple_repeat Simple_repeat 1 20 0 2536 62 0 0 chr1 890484 890792 -281302872 + AluY SINE Alu 1 308 -3 968 118 51 0 chr1 890794 890971 -281302693 + LTR10A LTR ERV1 376 609 0 506 81 0 40 chr1 890971 891045 -281302619 + Alu SINE Alu 221 291 -19 905 78 0 8 chr1 891047 891175 -281302489 + FLAM_C SINE Alu 1 127 -16 1525 179 26 23 chr1 891267 891435 -281302229 - AluSx SINE Alu -3 309 138 2099 111 3 3 chr1 891435 891732 -281301932 - AluSq SINE Alu -14 299 3 1525 179 26 23 chr1 891732 891871 -281301793 - AluSx SINE Alu -174 138 1 1963 111 28 7 chr1 891881 892170 -281301494 - AluSg SINE Alu -15 295 1 1206 163 80 73 chr1 892246 892546 -281301118 + AluJo SINE Alu 1 302 -10 250 203 47 31 chr1 895515 895579 -281298085 + L1MC3 LINE L1 7496 7560 -225 252 219 16 16 chr1 895642 895706 -281297958 + L1MC3 LINE L1 7709 7772 -13 * 1498 230 72 0 chr1 895705 896123 -281297541 + L1 LINE L1 3508 3955 -2191 934 92 0 0 chr1 896138 896258 -281297406 + AluSq/x SINE Alu 1 120 -192 849 226 76 4 chr1 896318 896593 -281297071 + L1 LINE L1 3949 4243 -1903 1811 133 10 43 chr1 896636 896793 -281296871 - AluSx SINE Alu -20 292 148 2200 102 0 3 chr1 896793 897097 -281296567 - AluSg SINE Alu -7 303 1 1811 133 10 43 chr1 897097 897241 -281296423 - AluSx SINE Alu -164 148 1 1856 147 10 0 chr1 897245 897544 -281296120 - AluSx SINE Alu -4 308 7 1647 190 0 0 chr1 897564 897843 -281295821 - AluJb SINE Alu -25 287 9 269 196 18 0 chr1 897941 897997 -281295667 + MLT1I LTR MaLR 353 409 0 1952 132 10 0 chr1 898212 898501 -281295163 - AluSc SINE Alu -17 292 1 1286 121 15 5 chr1 900693 900891 -281292773 + AluSq SINE Alu 1 200 -113 22 35 0 0 chr1 900891 900920 -281292744 + AT_rich Low_complexity Low_complexity 1 29 0 965 183 106 84 chr1 900931 900986 -281292678 + AluJb SINE Alu 14 66 -246 2076 114 0 0 chr1 900986 901276 -281292388 - AluSg SINE Alu -20 290 1 965 183 106 84 chr1 901276 901493 -281292171 + AluJb SINE Alu 66 292 -20 1687 143 4 8 chr1 901499 901757 -281291907 + AluSq SINE Alu 1 257 -56 2269 75 7 0 chr1 902250 902545 -281291119 - AluY SINE Alu -13 298 2 835 116 16 16 chr1 905141 905270 -281288394 + AluSp SINE Alu 13 141 -172 1961 112 10 17 chr1 905274 905570 -281288094 + AluY SINE Alu 1 294 -17 1747 122 3 91 chr1 905945 906265 -281287399 - AluSx SINE Alu -20 292 1 1417 152 24 110 chr1 906265 906599 -281287065 - AluSp SINE Alu -7 306 1 819 115 23 8 chr1 906613 906743 -281286921 - AluY SINE Alu -179 132 1 1201 171 15 0 chr1 906744 906949 -281286715 - AluJb SINE Alu -20 292 85 2057 114 0 10 chr1 908281 908578 -281285086 + AluSg SINE Alu 1 294 -16 216 0 0 0 chr1 909118 909142 -281284522 + (TG)n Simple_repeat Simple_repeat 2 25 0 383 279 0 53 chr1 909199 909389 -281284275 + (TG)n Simple_repeat Simple_repeat 1 180 0 315 238 17 0 chr1 909413 909585 -281284079 + (TG)n Simple_repeat Simple_repeat 2 176 0 494 279 6 6 chr1 909613 909792 -281283872 + (TG)n Simple_repeat Simple_repeat 1 179 0 318 339 6 27 chr1 909704 909887 -281283777 + (CGTG)n Simple_repeat Simple_repeat 1 179 0 * 1834 144 17 0 chr1 910845 911136 -281282528 + AluSx SINE Alu 1 296 -16 2076 79 18 0 chr1 911138 911464 -281282200 + AluSp SINE Alu 1 331 0 935 167 61 5 chr1 911918 912116 -281281548 + AluSg/x SINE Alu 85 293 -17 1346 149 0 0 chr1 912119 912327 -281281337 + AluSg/x SINE Alu 83 290 -20 2173 86 7 0 chr1 912334 912626 -281281038 + AluY SINE Alu 1 294 -17 1925 130 3 7 chr1 914341 914641 -281279023 + AluSx SINE Alu 1 299 -13 2347 65 13 0 chr1 914652 914959 -281278705 + AluY SINE Alu 1 311 0 516 231 0 0 chr1 914977 915085 -281278579 + FLAM_A SINE Alu 20 127 -15 1844 148 0 0 chr1 915348 915638 -281278026 + AluSc SINE Alu 1 290 -19 1108 39 0 0 chr1 915646 915773 -281277891 + AluY SINE Alu 9 135 -176 1850 50 50 0 chr1 915773 916011 -281277653 + AluY SINE Alu 60 309 -2 1831 110 41 10 chr1 916021 916313 -281277351 + AluSg SINE Alu 3 303 -7 189 0 0 0 chr1 917023 917044 -281276620 + (CCCCG)n Simple_repeat Simple_repeat 2 22 0 25 35 0 52 chr1 917157 917215 -281276449 + GC_rich Low_complexity Low_complexity 1 55 0 2137 158 140 0 chr1 917766 917905 -281275759 + LTR10A LTR ERV1 1 119 -490 1829 135 204 13 chr1 917905 918283 -281275381 - LTR7 LTR ERV1 0 450 1 2137 158 140 0 chr1 918283 918623 -281275041 + LTR10A LTR ERV1 119 547 -62 489 134 24 0 chr1 918642 918724 -281274940 + Alu SINE Alu 228 311 0 1863 129 13 26 chr1 918729 918940 -281274724 + AluSx SINE Alu 1 208 -104 1495 182 102 62 chr1 918940 919373 -281274291 - LTR7 LTR ERV1 0 450 1 1863 129 13 26 chr1 919373 919464 -281274200 + AluSx SINE Alu 208 299 -13 842 102 16 23 chr1 919466 919594 -281274070 + FLAM_C SINE Alu 1 127 -16 854 200 0 25 chr1 919677 919837 -281273827 - AluSg/x SINE Alu -17 293 138 1700 123 22 75 chr1 919837 920155 -281273509 - AluSq SINE Alu -12 301 1 250 203 47 31 chr1 921958 922022 -281271642 + L1MC3 LINE L1 7496 7560 -225 292 169 31 15 chr1 922084 922149 -281271515 + L1MD3 LINE L1 7920 7985 -10 2856 218 55 52 chr1 922150 922584 -281271080 + L1 LINE L1 3510 3941 -2205 1968 92 58 20 chr1 922584 922876 -281270788 - AluY SINE Alu -8 303 1 1805 113 4 0 chr1 922877 923133 -281270531 - AluSp SINE Alu -8 305 49 2856 218 55 52 chr1 923133 923525 -281270139 + L1 LINE L1 3941 4330 -1816 2431 72 7 0 chr1 923525 923832 -281269832 - AluY SINE Alu -2 309 1 2856 218 55 52 chr1 923832 923953 -281269711 + L1 LINE L1 4330 4449 -1697 2182 95 0 10 chr1 923953 924258 -281269406 + AluSx SINE Alu 1 302 -10 2856 218 55 52 chr1 924258 924392 -281269272 + L1 LINE L1 4449 4679 -1467 1964 100 0 0 chr1 924392 924652 -281269012 - AluSx SINE Alu -51 261 2 2856 218 55 52 chr1 924652 924687 -281268977 + L1 LINE L1 4679 4712 -1434 281 261 203 7 chr1 924729 924867 -281268797 + MLT1A1 LTR MaLR 128 292 -73 1971 121 10 10 chr1 924917 925207 -281268457 - AluSx SINE Alu -10 302 13 1554 206 0 13 chr1 925215 925516 -281268148 - AluJb SINE Alu -15 297 1 296 161 18 0 chr1 925603 925659 -281268005 + MLT1I LTR MaLR 353 409 0 2054 126 0 0 chr1 927654 927948 -281265716 + AluSq SINE Alu 1 294 -19 2087 100 3 32 chr1 928761 929072 -281264592 + AluSp SINE Alu 1 302 -11 1860 134 20 0 chr1 930123 930415 -281263249 + AluSx SINE Alu 1 298 -14 780 191 0 14 chr1 930421 930562 -281263102 + AluJb SINE Alu 3 141 -171 1904 123 17 17 chr1 930562 930855 -281262809 + AluSp SINE Alu 1 293 -20 1892 155 0 7 chr1 930861 931164 -281262500 + AluSx SINE Alu 1 301 -11 1885 136 4 0 chr1 931166 931469 -281262195 + AluSc SINE Alu 1 304 0 2455 64 0 6 chr1 931518 931829 -281261835 - AluY SINE Alu -2 309 1 2475 65 0 7 chr1 933898 934208 -281259456 - AluY SINE Alu -3 308 1 2059 125 0 3 chr1 935201 935498 -281258166 + AluSp SINE Alu 1 296 -17 940 134 0 0 chr1 935506 935640 -281258024 + AluSq/x SINE Alu 2 135 -178 1796 159 3 0 chr1 935640 935936 -281257728 + AluSx SINE Alu 1 297 -15 302 271 68 0 chr1 936196 936314 -281257350 - HUERS-P1 LTR ERV1 -3861 2402 2277 1078 129 6 0 chr1 936314 936477 -281257187 - AluSc SINE Alu 0 309 146 2157 116 3 0 chr1 937496 937798 -281255866 + AluSx SINE Alu 1 303 -9 2160 82 21 7 chr1 937806 938097 -281255567 + AluY SINE Alu 1 295 -16 2329 58 17 0 chr1 938800 939094 -281254570 - AluY SINE Alu -11 300 2 1380 186 69 9 chr1 939409 939743 -281253921 + Harlequin LTR ERV1 1378 1731 -4918 578 140 26 88 chr1 939730 940070 -281253594 + Harlequin LTR ERV1 704 1136 -5760 * 1883 121 24 17 chr1 940071 940369 -281253295 + AluY SINE Alu 2 301 -10 1302 158 3 81 chr1 940440 940549 -281253115 + Harlequin LTR ERV1 4187 4303 -3482 1998 113 0 53 chr1 940549 940869 -281252795 + AluSx SINE Alu 1 303 -9 1302 158 3 81 chr1 940869 941003 -281252661 + Harlequin LTR ERV1 4303 4404 -3381 2557 50 0 0 chr1 941003 941304 -281252360 - AluY SINE Alu -10 301 1 1302 158 3 81 chr1 941304 941369 -281252295 + Harlequin LTR ERV1 4404 4472 -3313 579 131 0 0 chr1 941336 941435 -281252229 + Harlequin LTR ERV1 1611 1709 -5187 * 2120 115 3 3 chr1 941435 941739 -281251925 + AluSx SINE Alu 1 304 -8 2386 65 20 0 chr1 941739 942033 -281251631 + AluY SINE Alu 1 300 -11 1016 115 48 0 chr1 942033 942220 -281251444 + LTR10A LTR ERV1 366 609 0 484 95 0 40 chr1 942220 942294 -281251370 + Alu SINE Alu 221 291 -19 894 78 0 8 chr1 942296 942424 -281251240 + FLAM_C SINE Alu 1 127 -16 1544 175 26 23 chr1 942516 942684 -281250980 - AluSx SINE Alu -3 309 138 2130 104 3 3 chr1 942684 942981 -281250683 - AluSq SINE Alu -14 299 3 1544 175 26 23 chr1 942981 943120 -281250544 - AluSx SINE Alu -174 138 1 1949 119 27 7 chr1 943129 943423 -281250241 - AluSg SINE Alu -10 300 1 1206 163 80 73 chr1 943499 943799 -281249865 + AluJo SINE Alu 1 302 -10 674 197 16 8 chr1 945012 945139 -281248525 + FLAM_C SINE Alu 1 128 -5 1875 153 33 0 chr1 945143 945468 -281248196 + AluJb SINE Alu 2 336 0 1945 113 25 0 chr1 945470 945745 -281247919 + AluSx SINE Alu 1 282 -30 2301 46 0 3 chr1 945899 946208 -281247456 + AluY SINE Alu 1 308 0 28 61 0 0 chr1 949375 949424 -281244240 + GC_rich Low_complexity Low_complexity 1 49 0 215 170 38 0 chr1 953177 953230 -281240434 + (CCCG)n Simple_repeat Simple_repeat 1 55 0 23 0 0 0 chr1 953291 953314 -281240350 + GC_rich Low_complexity Low_complexity 1 23 0 216 0 0 0 chr1 953423 953447 -281240217 + (CTCG)n Simple_repeat Simple_repeat 1 24 0 202 205 26 39 chr1 956059 956137 -281237527 + (CGGGG)n Simple_repeat Simple_repeat 2 78 0 25 0 0 0 chr1 958402 958427 -281235237 + GC_rich Low_complexity Low_complexity 1 25 0 335 305 58 39 chr1 958942 959096 -281234568 + L1MEd LINE L1 14 170 -5949 1803 148 14 0 chr1 959099 959389 -281234275 + AluJb SINE Alu 1 294 -18 408 310 96 11 chr1 959588 959859 -281233805 + L1MEd LINE L1 620 913 -5206 916 208 0 0 chr1 959896 960055 -281233609 - AluJo/FRAM SINE Alu -7 295 137 1244 134 0 0 chr1 960058 960237 -281233427 - AluSq SINE Alu -1 312 134 2298 73 3 3 chr1 960237 960538 -281233126 - AluY SINE Alu -10 301 1 341 176 0 12 chr1 961042 961127 -281232537 + C-rich Low_complexity Low_complexity 5 88 0 253 181 6 66 chr1 961236 961402 -281232262 + G-rich Low_complexity Low_complexity 3 158 0 287 304 6 39 chr1 961473 961654 -281232010 + GA-rich Low_complexity Low_complexity 2 176 0 * 320 291 0 39 chr1 961529 961711 -281231953 + G-rich Low_complexity Low_complexity 4 178 0 2065 97 7 20 chr1 963238 963538 -281230126 - AluSc SINE Alu -13 296 1 1643 180 3 3 chr1 963617 963906 -281229758 - AluJb SINE Alu -22 290 2 2239 115 0 6 chr1 963967 964279 -281229385 - AluSq SINE Alu -3 310 1 1038 104 0 0 chr1 964496 964631 -281229033 + AluSq/x SINE Alu 2 136 -177 2014 119 3 22 chr1 964631 964943 -281228721 + AluSx SINE Alu 1 306 -6 1864 143 20 3 chr1 964946 965240 -281228424 + AluSx SINE Alu 1 299 -13 229 200 20 0 chr1 965297 965347 -281228317 - L2 LINE L2 -2 3270 3220 3119 152 56 2 chr1 965353 965946 -281227718 - MER41B LTR ERV1 -7 628 4 372 234 80 7 chr1 966068 966205 -281227459 + REP3 LTR ERV 122 268 -294 272 248 76 19 chr1 966232 966337 -281227327 - L2 LINE L2 -101 3212 3102 208 203 0 94 chr1 968013 968077 -281225587 + (CGGGG)n Simple_repeat Simple_repeat 1 58 0 21 0 0 0 chr1 968464 968485 -281225179 + GC_rich Low_complexity Low_complexity 1 21 0 3928 32 42 11 chr1 969866 970341 -281223323 + LTR2B LTR ERV1 1 490 0 5980 85 20 6 chr1 970341 971228 -281222436 + Harlequin LTR ERV1 1 900 -5996 5770 61 44 11 chr1 971214 971647 -281222017 + Harlequin LTR ERV1 1572 1989 -4907 * 2640 27 0 0 chr1 971647 971948 -281221716 - AluY SINE Alu -10 301 1 5770 61 44 11 chr1 971948 972485 -281221179 + Harlequin LTR ERV1 1989 2574 -4322 * 21774 119 15 7 chr1 972484 975997 -281217667 + Harlequin LTR ERV1 3352 6895 -1 3773 47 47 4 chr1 975997 976467 -281217197 + LTR2B LTR ERV1 1 490 0 225 289 87 59 chr1 976551 976867 -281216797 - L1M3e LINE L1 -5486 1544 656 646 268 36 54 chr1 977050 977180 -281216484 + MER74B LTR ERVL 211 342 -280 2284 104 0 0 chr1 977180 977487 -281216177 - AluY SINE Alu -4 307 1 2204 101 0 3 chr1 977487 977785 -281215879 - AluSq SINE Alu -16 297 1 646 268 36 54 chr1 977785 977945 -281215719 + MER74B LTR ERVL 341 498 -124 8041 57 2 0 chr1 977945 978912 -281214752 - LTR5 LTR ERVK 0 969 1 646 268 36 54 chr1 978912 978955 -281214709 + MER74B LTR ERVL 498 540 -82 1256 153 157 0 chr1 979030 979266 -281214398 + AluJb SINE Alu 21 293 -19 1755 131 75 0 chr1 979270 979552 -281214112 - AluSx SINE Alu -9 303 1 851 85 15 31 chr1 979555 979685 -281213979 - AluSp/q SINE Alu -19 294 167 1728 130 0 0 chr1 979702 979956 -281213708 + AluSx SINE Alu 59 312 0 304 214 208 45 chr1 980060 980238 -281213426 + L1MC4 LINE L1 7772 7978 -64 1670 143 0 21 chr1 980430 980717 -281212947 - AluJb SINE Alu -17 295 15 340 170 119 6 chr1 980765 981001 -281212663 + AluSg SINE Alu 6 301 0 26 82 0 0 chr1 981082 981143 -281212521 + GC_rich Low_complexity Low_complexity 1 61 0 23 0 0 0 chr1 981644 981667 -281211997 + GC_rich Low_complexity Low_complexity 1 23 0 1885 140 20 0 chr1 982352 982645 -281211019 - AluSx SINE Alu -13 299 1 298 211 53 0 chr1 982648 982724 -281210940 - AluJ/FRAM SINE Alu 0 302 223 1633 182 19 0 chr1 982966 983273 -281210391 + 7SLRNA srpRNA srpRNA 1 313 -7 787 193 12 30 chr1 983273 983439 -281210225 + AluJo/FRAM SINE Alu 134 296 -16 1899 121 46 0 chr1 983444 983725 -281209939 + AluSg SINE Alu 1 294 -16 1911 122 4 0 chr1 983947 984225 -281209439 + AluY SINE Alu 28 306 -5 2395 69 0 3 chr1 984265 984571 -281209093 + AluY SINE Alu 1 305 -6 1551 167 20 30 chr1 984574 984873 -281208791 + AluSx SINE Alu 1 296 -16 2287 93 3 0 chr1 985177 985477 -281208187 + AluY SINE Alu 1 301 -10 2108 123 3 3 chr1 985563 985872 -281207792 - AluY SINE Alu -2 309 1 918 98 15 8 chr1 985884 986016 -281207648 - AluSp SINE Alu -180 133 1 219 167 42 21 chr1 987719 987767 -281205897 - L3 LINE CR1 -917 660 612 189 0 0 0 chr1 989414 989435 -281204229 + (CGG)n Simple_repeat Simple_repeat 2 22 0 278 238 24 12 chr1 989783 989867 -281203797 + (CCCCAG)n Simple_repeat Simple_repeat 6 90 0 609 196 43 43 chr1 990798 990842 -281202822 - MER20 DNA MER1_type 0 219 176 1504 195 17 14 chr1 990842 991139 -281202525 - AluJo SINE Alu -14 298 1 609 196 43 43 chr1 991139 991257 -281202407 - MER20 DNA MER1_type -42 177 57 814 215 6 0 chr1 991262 991420 -281202244 + FRAM SINE Alu 2 160 -16 2064 103 3 10 chr1 991557 991672 -281201992 + AluSq SINE Alu 21 135 -178 2471 43 7 3 chr1 991672 991972 -281201692 + AluY SINE Alu 1 301 -10 2064 103 3 10 chr1 991972 992147 -281201517 + AluSq SINE Alu 135 309 -4 2171 109 3 0 chr1 992154 992448 -281201216 + AluSx SINE Alu 2 296 -16 347 100 0 0 chr1 992458 992508 -281201156 - Alu SINE Alu -251 50 1 2101 96 6 38 chr1 992509 992822 -281200842 - AluSx SINE Alu -9 303 1 2044 116 0 23 chr1 993632 993942 -281199722 - AluSc SINE Alu -6 303 1 2270 117 0 0 chr1 993942 994251 -281199413 - AluSx SINE Alu -3 309 1 2141 105 7 0 chr1 994578 994874 -281198790 - AluSx SINE Alu -14 298 1 1439 178 14 51 chr1 998585 998750 -281194914 - AluJo SINE Alu -10 302 151 2196 93 7 0 chr1 998750 999041 -281194623 - AluY SINE Alu -18 293 1 1439 178 14 51 chr1 999041 999168 -281194496 - AluJo SINE Alu -161 151 21 1780 78 13 0 chr1 999339 999570 -281194094 - AluY SINE Alu -19 292 59 259 281 133 10 chr1 1199798 1200111 -280993553 + L1ME LINE L1 5265 5613 -508 2142 205 16 5 chr1 1200115 1200670 -280992994 + L1M4 LINE L1 3872 4432 -1714 257 362 0 0 chr1 1206111 1206288 -280987376 + G-rich Low_complexity Low_complexity 1 177 0 241 237 41 21 chr1 1207697 1207794 -280985870 - L1MC5 LINE L1 -32 7929 7831 428 269 47 0 chr1 1208074 1208223 -280985441 + MER58C DNA MER1_type 40 195 -20 354 331 40 20 chr1 1209460 1209608 -280984056 + MIR SINE MIR 9 159 -103 284 271 75 45 chr1 1209627 1209760 -280983904 - MIR SINE MIR -75 187 51 472 325 97 21 chr1 1210481 1210704 -280982960 + MIR SINE MIR 3 228 -28 268 293 187 8 chr1 1210773 1211019 -280982645 + L2 LINE L2 3015 3304 -9 35 71 0 0 chr1 1212187 1212257 -280981407 + GC_rich Low_complexity Low_complexity 1 70 0 2024 76 14 4 chr1 1213259 1213534 -280980130 + AluSx SINE Alu 21 298 -14 1927 144 3 0 chr1 1214717 1215015 -280978649 + AluSx SINE Alu 1 299 -13 2247 109 0 3 chr1 1215149 1215460 -280978204 - AluSq SINE Alu -3 310 1 379 193 9 9 chr1 1215567 1215676 -280977988 + GA-rich Low_complexity Low_complexity 4 112 0 2328 100 0 0 chr1 1215974 1216283 -280977381 - AluSq SINE Alu -4 309 1 1327 164 13 4 chr1 1216304 1216529 -280977135 - AluJb SINE Alu -1 311 85 231 293 35 17 chr1 1217922 1218038 -280975626 - MLT1H LTR MaLR -16 533 416 259 250 0 0 chr1 1218157 1218221 -280975443 - MLT1H LTR MaLR -375 174 111 2125 120 7 0 chr1 1218380 1218688 -280974976 + AluSx SINE Alu 1 310 -2 1327 213 161 20 chr1 1220309 1220718 -280972946 - MER34C LTR ERV1 -83 502 36 324 314 48 0 chr1 1220790 1220914 -280972750 - L2 LINE L2 -770 2544 2415 295 311 9 0 chr1 1221535 1221641 -280972023 + ERVL LTR ERVL 484 590 -5174 365 341 28 17 chr1 1221840 1222019 -280971645 - LTR41 LTR ERVL -590 183 3 213 311 212 0 chr1 1222669 1222801 -280970863 - MIR SINE MIR -23 239 80 1852 140 3 41 chr1 1224255 1224569 -280969095 + AluJo SINE Alu 1 302 -10 682 161 62 8 chr1 1224623 1224753 -280968911 - AluJo SINE Alu -175 137 1 1726 258 77 31 chr1 1224754 1225408 -280968256 - L1MB3 LINE L1 -46 6137 5454 266 333 17 8 chr1 1232813 1232930 -280960734 + (TG)n Simple_repeat Simple_repeat 1 118 0 2132 210 17 15 chr1 1232946 1233185 -280960479 - L1MB7 LINE L1 -345 5839 5602 2166 95 14 0 chr1 1233185 1233481 -280960183 - AluSp SINE Alu -13 300 1 2132 210 17 15 chr1 1233481 1233765 -280959899 - L1MB7 LINE L1 -582 5602 5315 509 163 0 0 chr1 1233778 1233858 -280959806 + AluJ/FLAM SINE Alu 1 80 -232 297 68 0 0 chr1 1233865 1233909 -280959755 + (TTG)n Simple_repeat Simple_repeat 2 45 0 842 199 0 0 chr1 1246248 1246404 -280947260 + FRAM SINE Alu 1 156 -20 1588 248 71 92 chr1 1246733 1247110 -280946554 + L1MB7 LINE L1 5098 5481 -703 1686 141 0 57 chr1 1247110 1247408 -280946256 - AluJb SINE Alu -17 295 15 1588 248 71 92 chr1 1247408 1248142 -280945522 + L1MB7 LINE L1 5481 6184 0 182 326 0 0 chr1 1251062 1251105 -280942559 + L2 LINE L2 3225 3267 -5 309 258 28 66 chr1 1253910 1254092 -280939572 + (CCCTG)n Simple_repeat Simple_repeat 5 179 0 949 134 0 0 chr1 1255139 1255273 -280938391 + AluSq/x SINE Alu 2 135 -177 2219 113 6 0 chr1 1255273 1255584 -280938080 + AluSp SINE Alu 1 313 0 1864 28 0 0 chr1 1256006 1256221 -280937443 + AluY SINE Alu 83 297 -14 362 258 33 46 chr1 1256577 1256728 -280936936 + MER45B DNA AcHobo 69 217 -823 435 233 27 82 chr1 1256905 1257051 -280936613 + MER45B DNA AcHobo 648 785 -255 231 188 0 0 chr1 1257048 1257096 -280936568 - Alu SINE Alu -3 299 252 * 2230 74 0 17 chr1 1257199 1257498 -280936166 - AluY SINE Alu -17 294 1 1262 157 0 65 chr1 1257499 1257760 -280935904 + AluJb SINE Alu 68 311 -1 2519 262 38 39 chr1 1257771 1258951 -280934713 - L1MB7 LINE L1 -841 5305 4172 1365 190 90 46 chr1 1258969 1259041 -280934623 - L1M4 LINE L1 -630 5623 5556 2109 113 0 10 chr1 1259041 1259352 -280934312 - AluY SINE Alu -3 308 1 2155 101 0 3 chr1 1259352 1259639 -280934025 - AluSc SINE Alu -17 292 7 1365 190 90 46 chr1 1259639 1259787 -280933877 - L1M4 LINE L1 -697 5556 5416 2332 189 97 5 chr1 1259787 1260231 -280933433 + MER66B LTR ERV1 2 486 0 1365 190 90 46 chr1 1260231 1260493 -280933171 - L1M4 LINE L1 -837 5416 5096 1947 107 46 7 chr1 1260493 1260774 -280932890 + AluSq SINE Alu 1 292 -21 1365 190 90 46 chr1 1260774 1260937 -280932727 - L1M4 LINE L1 -1157 5096 4942 927 146 0 0 chr1 1260954 1261084 -280932580 - FLAM_C SINE Alu -3 130 1 228 67 0 0 chr1 1261084 1261114 -280932550 + (T)n Simple_repeat Simple_repeat 1 30 0 723 188 17 23 chr1 1261139 1261315 -280932349 - L1M4 LINE L1 -2386 3829 3655 387 230 119 16 chr1 1261315 1261441 -280932223 - L1M4 LINE L1 -3446 2769 2631 331 221 35 0 chr1 1261499 1261585 -280932079 - L1M4 LINE L1 -3541 2674 2586 2015 136 0 38 chr1 1261586 1261902 -280931762 + AluSx SINE Alu 2 305 -7 6091 27 1 0 chr1 1261934 1262721 -280930943 - L1PA3 LINE L1 -3 6152 5365 * 10525 24 9 0 chr1 1262713 1264094 -280929570 + L1PA3 LINE L1 4003 5396 -750 2947 264 114 50 chr1 1264091 1264608 -280929056 - L1MEc LINE L1 -3632 2583 2101 * 210 37 0 0 chr1 1264608 1264635 -280929029 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 1904 136 7 27 chr1 1264645 1264946 -280928718 - AluJo SINE Alu -17 295 1 2947 264 114 50 chr1 1264946 1265537 -280928127 - L1MEc LINE L1 -4122 2093 1541 1806 94 0 12 chr1 1265537 1265781 -280927883 - AluSx SINE Alu -10 302 62 2947 264 114 50 chr1 1265781 1265982 -280927682 - L1MEc LINE L1 -4674 1541 1354 2345 162 27 39 chr1 1265982 1266174 -280927490 + Tigger2a DNA MER2_type 1 194 -2514 2170 96 10 0 chr1 1266174 1266467 -280927197 - AluSg SINE Alu -12 298 3 2345 162 27 39 chr1 1266467 1266713 -280926951 + Tigger2a DNA MER2_type 194 434 0 2947 264 114 50 chr1 1266713 1266822 -280926842 - L1MEc LINE L1 -4861 1354 1253 2136 110 7 3 chr1 1266822 1267146 -280926518 - AluSx SINE Alu 0 312 1 2947 264 114 50 chr1 1267146 1268118 -280925546 - L1MEc LINE L1 -4962 1253 55 2050 119 10 10 chr1 1268508 1268820 -280924844 - AluSx SINE Alu 0 312 1 255 259 0 0 chr1 1269096 1269150 -280924514 - L2 LINE L2 -8 3264 3211 23 0 0 0 chr1 1273134 1273157 -280920507 + GC_rich Low_complexity Low_complexity 1 23 0 28 0 0 0 chr1 1273324 1273352 -280920312 + GC_rich Low_complexity Low_complexity 1 28 0 322 250 0 0 chr1 1273639 1273703 -280919961 + MIR SINE MIR 103 166 -96 1703 126 0 8 chr1 1273863 1274118 -280919546 - AluJb SINE Alu -39 273 21 1120 101 0 0 chr1 1274269 1274418 -280919246 - AluSq/x SINE Alu -163 149 1 300 326 47 0 chr1 1276059 1276188 -280917476 - MLT1J LTR MaLR -139 372 238 413 306 31 12 chr1 1276408 1276568 -280917096 - MLT1J LTR MaLR -139 372 210 330 320 0 0 chr1 1279860 1279960 -280913704 + (TG)n Simple_repeat Simple_repeat 1 100 0 526 223 23 0 chr1 1279977 1280152 -280913512 + (CGTG)n Simple_repeat Simple_repeat 1 179 0 229 154 39 0 chr1 1280268 1280320 -280913344 + L1MC4a LINE L1 6720 6773 -1035 517 351 4 9 chr1 1280467 1280698 -280912966 + L1MC4 LINE L1 7435 7664 -378 2235 98 0 0 chr1 1282090 1282396 -280911268 + AluSx SINE Alu 5 310 -2 400 132 15 15 chr1 1282420 1282488 -280911176 - FRAM SINE Alu -81 95 28 234 0 0 0 chr1 1282916 1282942 -280910722 + (TG)n Simple_repeat Simple_repeat 1 26 0 244 183 50 0 chr1 1284760 1284820 -280908844 + (CCCCAG)n Simple_repeat Simple_repeat 6 68 0 735 148 15 37 chr1 1285741 1285968 -280907696 + FLAM_C SINE Alu 6 143 0 2260 95 10 0 chr1 1287051 1287356 -280906308 - AluSc SINE Alu -1 308 1 183 353 88 48 chr1 1288064 1288313 -280905351 - L2 LINE L2 -536 2778 2520 239 311 83 67 chr1 1288989 1289301 -280904363 - L2 LINE L2 -572 2742 2426 375 245 5 54 chr1 1296772 1296956 -280896708 + G-rich Low_complexity Low_complexity 6 180 0 425 321 87 60 chr1 1301239 1301808 -280891856 - L1 LINE L1 -2694 4154 1499 1564 143 112 28 chr1 1302872 1303159 -280890505 + AluJb SINE Alu 1 311 -1 880 220 31 135 chr1 1303170 1303497 -280890167 + AluYb8 SINE Alu 25 317 -1 370 55 36 0 chr1 1303497 1303552 -280890112 + (GA)n Simple_repeat Simple_repeat 1 57 0 614 99 12 56 chr1 1303552 1303714 -280889950 + (GGAA)n Simple_repeat Simple_repeat 4 158 0 295 128 12 47 chr1 1303834 1303920 -280889744 + GA-rich Low_complexity Low_complexity 3 85 0 183 213 0 0 chr1 1311776 1311851 -280881813 + GA-rich Low_complexity Low_complexity 2 76 0 240 35 0 0 chr1 1313710 1313739 -280879925 + (CCCCCG)n Simple_repeat Simple_repeat 5 33 0 258 281 0 0 chr1 1313789 1313853 -280879811 + G-rich Low_complexity Low_complexity 1 64 0 932 89 0 0 chr1 1316851 1316975 -280876689 - AluSq/x SINE Alu -189 124 1 1902 120 3 30 chr1 1321301 1321602 -280872062 - AluSg SINE Alu -17 293 1 238 143 0 48 chr1 1321702 1321744 -280871920 + MER5A DNA MER1_type 110 149 -40 688 176 7 44 chr1 1321835 1321971 -280871693 + FLAM_C SINE Alu 1 131 -2 311 247 93 33 chr1 1322972 1323122 -280870542 + MLT1A1 LTR MaLR 95 253 -112 263 330 6 34 chr1 1323717 1323959 -280869705 + (CGTG)n Simple_repeat Simple_repeat 1 235 0 2395 78 6 3 chr1 1324058 1324404 -280869260 - THE1A LTR MaLR -8 347 1 758 135 0 0 chr1 1324404 1324508 -280869156 + AluSp SINE Alu 110 213 -100 2308 59 7 0 chr1 1325884 1326174 -280867490 + AluY SINE Alu 7 298 -13 1622 181 26 29 chr1 1332445 1332755 -280860909 + AluJo SINE Alu 1 309 -3 321 308 22 0 chr1 1332759 1332850 -280860814 + GA-rich Low_complexity Low_complexity 4 96 0 2090 280 108 22 chr1 1335011 1335697 -280857967 + L1MC4 LINE L1 366 1184 -5537 2108 136 0 3 chr1 1335697 1336007 -280857657 - AluJb SINE Alu -3 309 1 2090 280 108 22 chr1 1336007 1336426 -280857238 + L1MC4 LINE L1 1184 1566 -5155 2230 99 3 3 chr1 1336580 1336892 -280856772 + AluSx SINE Alu 1 312 0 737 168 23 15 chr1 1336990 1337121 -280856543 + AluJb SINE Alu 1 132 -180 1986 107 3 31 chr1 1337123 1337442 -280856222 + AluSg SINE Alu 1 310 0 227 219 122 12 chr1 1337457 1337539 -280856125 + L1MC4 LINE L1 1873 1963 -4577 923 130 0 0 chr1 1337666 1337797 -280855867 - FLAM_C SINE Alu -2 131 1 701 196 30 60 chr1 1337806 1337974 -280855690 - AluSg/x SINE Alu -12 298 136 943 241 106 75 chr1 1337981 1338157 -280855507 + L1MC4 LINE L1 3945 4114 -2426 2162 111 3 0 chr1 1338157 1338454 -280855210 + AluSx SINE Alu 4 301 -11 943 241 106 75 chr1 1338454 1338488 -280855176 + L1MC4 LINE L1 4114 4145 -2395 2073 130 3 3 chr1 1338488 1338795 -280854869 + AluSx SINE Alu 1 307 -5 943 241 106 75 chr1 1338795 1339131 -280854533 + L1MC4 LINE L1 4145 4509 -2031 2230 256 63 20 chr1 1339860 1340850 -280852814 + L1MC4 LINE L1 4457 5404 -1154 2027 145 7 0 chr1 1340850 1341160 -280852504 + AluJb SINE Alu 1 312 0 2230 256 63 20 chr1 1341160 1342152 -280851512 + L1MC4 LINE L1 5404 6558 0 608 289 11 21 chr1 1342364 1342551 -280851113 - MER58A DNA MER1_type 0 224 40 466 272 68 0 chr1 1342553 1342700 -280850964 + MER5A DNA MER1_type 24 180 -9 2031 116 20 0 chr1 1342845 1343139 -280850525 + AluSg SINE Alu 2 301 -9 2062 122 3 0 chr1 1343649 1343977 -280849687 + AluSp SINE Alu 1 313 0 735 352 153 16 chr1 1344368 1345013 -280848651 + HAL1 LINE L1 828 1561 -946 1924 148 0 3 chr1 1348575 1348872 -280844792 - AluSx SINE Alu -16 296 1 791 155 8 0 chr1 1350266 1350395 -280843269 + AluJo SINE Alu 5 134 -178 342 358 102 20 chr1 1350968 1351222 -280842442 + L1MC4 LINE L1 7768 8042 0 2188 86 7 3 chr1 1351478 1351770 -280841894 + AluSx SINE Alu 1 293 -19 2257 100 7 0 chr1 1354444 1354743 -280838921 - AluSg SINE Alu -9 301 1 2667 217 68 19 chr1 1355268 1355589 -280838075 + L1MB3 LINE L1 5258 5562 -621 2140 129 3 0 chr1 1355589 1355900 -280837764 + AluSx SINE Alu 1 312 0 2084 133 0 10 chr1 1355910 1356219 -280837445 + AluSx SINE Alu 1 306 -6 2667 217 68 19 chr1 1356219 1356641 -280837023 + L1MB3 LINE L1 5570 6049 -134 720 272 22 0 chr1 1356658 1356886 -280836778 - L1 LINE L1 -3654 2492 2260 316 235 265 0 chr1 1356938 1357040 -280836624 + L1ME LINE L1 5312 5440 -681 2226 71 4 0 chr1 1357219 1357526 -280836138 + AluY SINE Alu 1 308 0 241 185 0 98 chr1 1357537 1357629 -280836035 + L1ME LINE L1 5625 5707 -414 1507 179 52 10 chr1 1358675 1358966 -280834698 + AluJo SINE Alu 1 303 -9 321 125 0 0 chr1 1359483 1359539 -280834125 + (CA)n Simple_repeat Simple_repeat 1 56 0 293 258 24 24 chr1 1359664 1359788 -280833876 + L1MC5 LINE L1 7660 7783 -178 2263 61 10 3 chr1 1359792 1360085 -280833579 + AluY SINE Alu 1 295 -16 190 233 47 0 chr1 1364032 1364075 -280829589 + L2 LINE L2 352 396 -2918 2197 79 3 7 chr1 1364777 1365068 -280828596 + AluSc SINE Alu 1 290 -19 2162 121 0 6 chr1 1366138 1366452 -280827212 + AluSx SINE Alu 1 312 0 330 187 131 0 chr1 1368679 1368774 -280824890 - MIR SINE MIR -83 125 41 198 143 0 0 chr1 1370490 1370525 -280823139 + (CA)n Simple_repeat Simple_repeat 1 35 0 22 35 0 0 chr1 1372527 1372556 -280821108 + GC_rich Low_complexity Low_complexity 1 29 0 36 40 0 0 chr1 1372731 1372781 -280820883 + GC_rich Low_complexity Low_complexity 1 50 0 206 179 0 15 chr1 1372941 1373008 -280820656 + (CTCGG)n Simple_repeat Simple_repeat 5 70 0 30 77 0 0 chr1 1373008 1373073 -280820591 + GC_rich Low_complexity Low_complexity 1 65 0 37 23 0 0 chr1 1373429 1373473 -280820191 + GC_rich Low_complexity Low_complexity 1 44 0 1543 145 16 92 chr1 1374339 1374656 -280819008 + AluJb SINE Alu 3 295 -17 2355 58 7 0 chr1 1374657 1374948 -280818716 + AluY SINE Alu 1 293 -18 2301 108 0 0 chr1 1374959 1375266 -280818398 + AluSx SINE Alu 3 309 -3 209 302 47 19 chr1 1376259 1376365 -280817299 - L2 LINE L2 -255 3058 2950 183 156 0 0 chr1 1376445 1376477 -280817187 + (CCCTG)n Simple_repeat Simple_repeat 5 36 0 2310 91 3 3 chr1 1376628 1376936 -280816728 - AluSq SINE Alu -5 308 1 471 241 87 100 chr1 1376959 1377004 -280816660 - LTR16C LTR ERVL 0 491 447 2176 95 0 3 chr1 1377004 1377325 -280816339 - AluSx SINE Alu 0 320 1 933 110 16 0 chr1 1377335 1377462 -280816202 - FLAM_C SINE Alu -4 129 1 471 241 87 100 chr1 1377462 1377645 -280816019 - LTR16C LTR ERVL -53 438 254 408 252 122 98 chr1 1377698 1377984 -280815680 + L1MC4a LINE L1 6442 6734 -1074 1387 100 5 0 chr1 1377986 1378176 -280815488 - AluY SINE Alu -13 298 108 1631 176 40 10 chr1 1378995 1379296 -280814368 - AluSq SINE Alu -3 310 1 1243 156 5 0 chr1 1379582 1379781 -280813883 - AluSx SINE Alu -81 231 32 739 274 55 20 chr1 1379788 1380318 -280813346 - L1ME2 LINE L1 -47 6117 5549 378 250 15 76 chr1 1380669 1380801 -280812863 + L1MC4 LINE L1 6966 7089 -953 1800 167 10 6 chr1 1380842 1381153 -280812511 + AluJo SINE Alu 1 312 0 906 191 0 0 chr1 1381153 1381315 -280812349 + AluJo/FRAM SINE Alu 132 293 -19 182 91 30 0 chr1 1381317 1381350 -280812314 + GA-rich Low_complexity Low_complexity 1 34 0 963 312 148 10 chr1 1381355 1381958 -280811706 + L1MC4 LINE L1 7284 7990 -5 2355 85 0 0 chr1 1382184 1382489 -280811175 - AluY SINE Alu -6 305 1 2217 101 0 10 chr1 1382490 1382796 -280810868 - AluSx SINE Alu -9 303 1 2143 72 0 38 chr1 1382807 1383124 -280810540 - AluY SINE Alu 0 306 1 450 302 105 43 chr1 1383329 1383816 -280809848 + HAL1 LINE L1 1749 2265 -242 307 289 41 29 chr1 1384110 1384139 -280809525 + L1M4 LINE L1 2797 2824 -3322 2059 120 36 0 chr1 1384139 1384440 -280809224 + AluSx SINE Alu 1 312 0 307 289 41 29 chr1 1384440 1384652 -280809012 + L1M4 LINE L1 2824 3041 -3105 2266 106 0 0 chr1 1384724 1385035 -280808629 - AluY SINE Alu 0 311 1 2192 114 0 0 chr1 1385035 1385333 -280808331 - AluSx SINE Alu -13 299 1 2309 98 0 0 chr1 1385346 1385653 -280808011 - AluY SINE Alu -4 307 1 207 69 0 0 chr1 1386531 1386560 -280807104 + (CACGC)n Simple_repeat Simple_repeat 4 32 0 2438 47 0 17 chr1 1390486 1390787 -280802877 + AluY SINE Alu 6 301 -10 1091 68 0 0 chr1 1390803 1390936 -280802728 + AluSq/x SINE Alu 1 133 -180 2502 48 0 16 chr1 1390939 1391249 -280802415 + AluY SINE Alu 1 305 -6 2422 72 0 25 chr1 1391265 1391401 -280802263 + AluSq SINE Alu 1 139 -174 2380 68 0 10 chr1 1391401 1391709 -280801955 + AluY SINE Alu 1 305 -6 279 0 0 0 chr1 1391709 1391740 -280801924 + (TA)n Simple_repeat Simple_repeat 2 32 0 2422 72 0 25 chr1 1391740 1391923 -280801741 + AluSq SINE Alu 137 313 0 292 250 0 26 chr1 1395101 1395177 -280798487 + (CACG)n Simple_repeat Simple_repeat 3 76 0 213 39 0 0 chr1 1395178 1395204 -280798460 + (CA)n Simple_repeat Simple_repeat 2 27 0 277 395 26 21 chr1 1395596 1395786 -280797878 + MIR3 SINE MIR 4 194 -14 2477 47 7 0 chr1 1396258 1396555 -280797109 - AluY SINE Alu -12 299 1 182 152 0 22 chr1 1397748 1397794 -280795870 + (CGGGG)n Simple_repeat Simple_repeat 5 49 0 356 253 11 59 chr1 1397867 1398053 -280795611 + G-rich Low_complexity Low_complexity 3 179 0 * 422 124 15 144 chr1 1397924 1398126 -280795538 + (CGGGG)n Simple_repeat Simple_repeat 4 179 0 259 345 0 0 chr1 1398069 1398246 -280795418 + G-rich Low_complexity Low_complexity 1 177 0 * 21 36 0 0 chr1 1398496 1398524 -280795140 + GC_rich Low_complexity Low_complexity 1 28 0 243 350 98 12 chr1 1399200 1399363 -280794301 + MIR SINE MIR 47 223 -39 695 120 28 28 chr1 1400221 1400329 -280793335 + AluJo SINE Alu 34 141 -171 1629 173 43 17 chr1 1400329 1400451 -280793213 + AluJb SINE Alu 1 118 -194 189 0 0 0 chr1 1400451 1400472 -280793192 + (CAAAA)n Simple_repeat Simple_repeat 5 25 0 1629 173 43 17 chr1 1400472 1400650 -280793014 + AluJb SINE Alu 118 309 -3 697 167 0 0 chr1 1400656 1400764 -280792900 + AluSg/x SINE Alu 191 298 -14 2400 84 0 0 chr1 1401058 1401367 -280792297 - AluY SINE Alu 0 311 3 2120 124 0 7 chr1 1401369 1401667 -280791997 - AluSx SINE Alu -16 296 1 761 276 128 43 chr1 1402441 1402681 -280790983 - MLT1C LTR MaLR -7 460 242 2154 132 3 0 chr1 1402681 1402991 -280790673 - AluSq SINE Alu -2 311 1 2288 104 0 3 chr1 1402999 1403307 -280790357 - AluSx SINE Alu -3 309 3 761 276 128 43 chr1 1403307 1403478 -280790186 - MLT1C LTR MaLR -231 236 4 270 0 0 0 chr1 1403683 1403713 -280789951 + (GGCTG)n Simple_repeat Simple_repeat 4 33 0 1897 171 0 0 chr1 1406237 1406547 -280787117 - AluSx SINE Alu -2 310 1 1481 177 79 4 chr1 1406549 1406826 -280786838 - AluJo SINE Alu -14 298 1 194 71 0 71 chr1 1408282 1408324 -280785340 + (CGGGGG)n Simple_repeat Simple_repeat 3 41 0 33 66 0 0 chr1 1408390 1408451 -280785213 + GC_rich Low_complexity Low_complexity 1 61 0 333 212 28 34 chr1 1408719 1408898 -280784766 + GA-rich Low_complexity Low_complexity 1 178 0 328 250 12 30 chr1 1408926 1409090 -280784574 + GA-rich Low_complexity Low_complexity 3 163 0 198 220 34 25 chr1 1409121 1409239 -280784425 + GA-rich Low_complexity Low_complexity 5 123 0 312 367 20 27 chr1 1409265 1409415 -280784249 + HAL1b LINE L1 1 149 -1199 1632 136 57 4 chr1 1411000 1411264 -280782400 + AluJo SINE Alu 1 278 -34 2353 52 24 0 chr1 1412144 1412434 -280781230 - AluSx SINE Alu -15 297 1 309 204 118 11 chr1 1413817 1413910 -280779754 - MER5A DNA MER1_type -5 184 82 2139 114 3 10 chr1 1414516 1414824 -280778840 - AluJo SINE Alu -6 306 1 2635 26 0 7 chr1 1414837 1415146 -280778518 - AluY SINE Alu 0 311 5 371 184 18 53 chr1 1415292 1415406 -280778258 + MLT1A2 LTR MaLR 111 220 -154 515 271 140 4 chr1 1415821 1416050 -280777614 + L1MC1 LINE L1 5840 6099 -234 185 65 32 0 chr1 1416153 1416184 -280777480 + (CAGGG)n Simple_repeat Simple_repeat 4 35 0 274 183 57 3 chr1 1416186 1416260 -280777404 + L1MC1 LINE L1 6261 6333 0 2433 71 3 0 chr1 1416270 1416581 -280777083 + AluSx SINE Alu 1 312 0 463 273 100 49 chr1 1419968 1420331 -280773333 + MLT1A1 LTR MaLR 4 358 -7 232 173 0 31 chr1 1420333 1420461 -280773203 + (CTCA)n Simple_repeat Simple_repeat 1 124 0 1150 103 13 0 chr1 1420471 1420627 -280773037 - AluSg/x SINE Alu -21 289 132 2177 94 0 16 chr1 1420627 1420936 -280772728 - AluSx SINE Alu -8 304 1 332 161 0 23 chr1 1420946 1421033 -280772631 + (CTCA)n Simple_repeat Simple_repeat 2 86 0 225 297 30 10 chr1 1422607 1422708 -280770956 - L2 LINE L2 -358 2956 2854 280 291 0 51 chr1 1423269 1423427 -280770237 + (TCCG)n Simple_repeat Simple_repeat 1 150 0 249 280 43 0 chr1 1425267 1425360 -280768304 + L1M4 LINE L1 5613 5709 -475 461 300 132 26 chr1 1425363 1425786 -280767878 + L1MB7 LINE L1 5671 6138 -46 270 326 0 0 chr1 1427380 1427478 -280766186 - MER47B DNA MER2_type 0 418 321 455 288 119 3 chr1 1427489 1427808 -280765856 - MER47B DNA MER2_type -51 367 12 477 162 42 6 chr1 1428344 1428511 -280765153 + (TTGGGG)n Simple_repeat Simple_repeat 2 174 0 302 326 0 41 chr1 1430857 1431029 -280762635 + (CACG)n Simple_repeat Simple_repeat 4 168 0 244 240 40 13 chr1 1431984 1432059 -280761605 + L1MB3 LINE L1 5413 5489 -682 327 266 23 0 chr1 1432117 1432213 -280761451 + L1MB3 LINE L1 5512 5613 -561 2156 101 7 7 chr1 1432213 1432509 -280761155 + AluSx SINE Alu 2 297 -15 327 266 23 0 chr1 1432509 1432521 -280761143 + L1MB3 LINE L1 5613 5623 -551 684 91 0 0 chr1 1432521 1432609 -280761055 - AluY SINE Alu -13 298 211 1732 250 41 30 chr1 1432731 1433298 -280760366 + L1MB3 LINE L1 5609 6181 -2 207 270 11 60 chr1 1433949 1434134 -280759530 + C-rich Low_complexity Low_complexity 2 177 0 * 311 253 18 42 chr1 1434005 1434171 -280759493 + (CCCA)n Simple_repeat Simple_repeat 1 162 0 732 207 39 6 chr1 1435477 1435656 -280758008 + MER58A DNA MER1_type 40 224 0 2151 110 0 13 chr1 1435869 1436179 -280757485 + AluSx SINE Alu 3 308 -4 1866 148 0 0 chr1 1437349 1437632 -280756032 - AluJb SINE Alu -23 289 7 635 242 62 0 chr1 1438058 1438236 -280755428 + MER58A DNA MER1_type 36 224 0 398 299 119 21 chr1 1438241 1438435 -280755229 - MIR SINE MIR -22 240 28 1261 208 144 5 chr1 1439129 1439518 -280754146 - MER54A LTR ERVL 0 901 459 321 289 21 48 chr1 1439635 1439822 -280753842 + L1M4 LINE L1 3729 3910 -2236 2345 76 0 29 chr1 1439851 1440166 -280753498 - AluY SINE Alu -5 306 1 627 297 36 89 chr1 1440960 1441027 -280752637 + L1M4 LINE L1 4369 4438 -1708 831 152 0 8 chr1 1441027 1441159 -280752505 + FLAM_C SINE Alu 1 131 -2 627 297 36 89 chr1 1441159 1441343 -280752321 + L1M4 LINE L1 4438 4600 -1546 2090 130 0 0 chr1 1441343 1441643 -280752021 + AluSx SINE Alu 1 300 -12 627 297 36 89 chr1 1441643 1441727 -280751937 + L1M4 LINE L1 4600 4687 -1459 411 21 0 0 chr1 1443502 1443550 -280750114 + (CA)n Simple_repeat Simple_repeat 2 49 0 1559 80 0 0 chr1 1444662 1444861 -280748803 + AluY SINE Alu 105 303 -8 1009 207 176 100 chr1 1445805 1445941 -280747723 + MER68 LTR ERV1 4 128 -434 678 136 88 32 chr1 1445941 1446066 -280747598 + FLAM_C SINE Alu 2 133 0 1009 207 176 100 chr1 1446066 1446077 -280747587 + MER68 LTR ERV1 128 137 -425 1811 149 40 7 chr1 1446077 1446378 -280747286 + AluSx SINE Alu 1 311 -1 1009 207 176 100 chr1 1446378 1446443 -280747221 + MER68 LTR ERV1 137 196 -366 1736 244 129 11 chr1 1446443 1446907 -280746757 + MLT2B1 LTR ERVL 2 520 0 1009 207 176 100 chr1 1446907 1447204 -280746460 + MER68 LTR ERV1 196 554 -8 253 289 11 44 chr1 1447402 1447492 -280746172 + L2 LINE L2 3185 3271 -1 241 225 12 12 chr1 1447934 1448014 -280745650 + (CACCAT)n Simple_repeat Simple_repeat 4 83 0 535 234 0 22 chr1 1448066 1448250 -280745414 + (CACCAT)n Simple_repeat Simple_repeat 1 180 0 705 204 2 19 chr1 1448269 1448681 -280744983 + (CACCAT)n Simple_repeat Simple_repeat 1 405 0 351 309 66 7 chr1 1448770 1448906 -280744758 - MIR SINE MIR -86 176 33 846 184 44 0 chr1 1449110 1449268 -280744396 - AluJb SINE Alu -55 257 93 268 299 23 0 chr1 1450263 1450350 -280743314 + MER91A DNA MER1_type 16 104 -92 1732 261 101 47 chr1 1450519 1451236 -280742428 + L1MB5 LINE L1 5353 6117 -57 2151 112 3 0 chr1 1451236 1451532 -280742132 - AluSx SINE Alu -15 297 1 1732 261 101 47 chr1 1451532 1451594 -280742070 + L1MB5 LINE L1 6117 6174 0 1526 170 3 80 chr1 1451632 1451956 -280741708 + AluJb SINE Alu 1 299 -13 783 200 48 24 chr1 1451962 1452127 -280741537 + FRAM SINE Alu 1 168 -8 735 278 15 0 chr1 1452475 1452673 -280740991 + Tigger3(Golem) DNA MER2_type 2827 3027 -2 2466 46 0 13 chr1 1453600 1453906 -280739758 - AluY SINE Alu -9 302 1 1717 142 21 21 chr1 1453915 1454204 -280739460 - AluJo SINE Alu -23 289 1 201 350 73 36 chr1 1455012 1455149 -280738515 + MER5A DNA MER1_type 13 154 -35 313 240 40 0 chr1 1455191 1455291 -280738373 + (TGGA)n Simple_repeat Simple_repeat 1 104 0 534 308 20 20 chr1 1455306 1455652 -280738012 + (TGGA)n Simple_repeat Simple_repeat 1 346 0 260 268 26 0 chr1 1455666 1455819 -280737845 + (TAGA)n Simple_repeat Simple_repeat 4 160 0 276 330 25 0 chr1 1455833 1455951 -280737713 + (TAGA)n Simple_repeat Simple_repeat 4 124 0 219 263 25 0 chr1 1455965 1456083 -280737581 + (TGGA)n Simple_repeat Simple_repeat 4 124 0 385 321 28 11 chr1 1456098 1456443 -280737221 + (TAGA)n Simple_repeat Simple_repeat 1 350 0 447 305 29 0 chr1 1456457 1456631 -280737033 + (TAGA)n Simple_repeat Simple_repeat 2 180 0 410 316 23 17 chr1 1456652 1456829 -280736835 + (TGGA)n Simple_repeat Simple_repeat 3 180 0 386 188 41 0 chr1 1456871 1457041 -280736623 + (TGGA)n Simple_repeat Simple_repeat 2 178 0 1937 132 0 17 chr1 1458363 1458659 -280735005 - AluJb SINE Alu -21 291 1 2508 58 0 3 chr1 1460962 1461274 -280732390 + AluY SINE Alu 1 311 0 197 273 0 0 chr1 1461523 1461567 -280732097 + L2 LINE L2 3208 3251 -21 2407 90 0 0 chr1 1462602 1462912 -280730752 + AluSx SINE Alu 1 310 -2 1990 114 4 0 chr1 1463286 1463559 -280730105 - AluSx SINE Alu -38 274 1 2120 105 0 13 chr1 1463571 1463875 -280729789 - AluSx SINE Alu -12 300 1 260 277 142 14 chr1 1463977 1464118 -280729546 - L1MEd LINE L1 -5382 737 579 2231 94 0 7 chr1 1464629 1464938 -280728726 - AluSg1 SINE Alu -2 307 1 1990 108 49 0 chr1 1465304 1465592 -280728072 - AluSx SINE Alu -10 302 1 484 262 159 0 chr1 1466640 1466768 -280726896 + MLT1C LTR MaLR 192 298 -169 1833 242 28 74 chr1 1466768 1467347 -280726317 + MLT2B3 LTR ERVL 1 552 -2 484 262 159 0 chr1 1467347 1467451 -280726213 + MLT1C LTR MaLR 298 461 -6 215 339 0 43 chr1 1470584 1470770 -280722894 + G-rich Low_complexity Low_complexity 1 178 0 292 192 110 0 chr1 1471249 1471322 -280722342 + MLT1B LTR MaLR 5 85 -289 * 314 204 13 26 chr1 1471315 1471402 -280722262 + MLT1B LTR MaLR 265 375 -15 2378 49 7 0 chr1 1472140 1472428 -280721236 + AluY SINE Alu 6 295 -16 788 138 0 43 chr1 1472785 1472923 -280720741 - AluSq/x SINE Alu -181 132 1 1106 282 65 8 chr1 1473385 1473754 -280719910 + MLT2C1 LTR ERVL 1 390 -7 1905 162 0 9 chr1 1474040 1474355 -280719309 + AluJb SINE Alu 1 312 0 466 259 72 96 chr1 1474581 1474944 -280718720 - L1MC3 LINE L1 -67 7718 7365 365 263 66 6 chr1 1479565 1479733 -280713931 - MLT1A2 LTR MaLR 0 374 205 445 326 0 0 chr1 1479838 1480013 -280713651 + (CCCTAA)n Simple_repeat Simple_repeat 6 180 0 491 312 0 0 chr1 1480039 1480458 -280713206 + (CCCTAA)n Simple_repeat Simple_repeat 1 419 0 413 326 11 0 chr1 1480481 1480659 -280713005 + (CCCTAA)n Simple_repeat Simple_repeat 1 180 0 350 296 23 17 chr1 1480751 1480927 -280712737 + (CACCAT)n Simple_repeat Simple_repeat 2 178 0 * 467 326 0 0 chr1 1480918 1481093 -280712571 + (CCCTAA)n Simple_repeat Simple_repeat 6 180 0 325 317 6 22 chr1 1481105 1481288 -280712376 + (CCCTAA)n Simple_repeat Simple_repeat 1 180 0 545 181 19 9 chr1 1481323 1481428 -280712236 - MLT1A2 LTR MaLR -268 106 1 479 282 138 0 chr1 1481428 1481616 -280712048 + MLT-int LTR MaLR 1496 1709 -26 610 331 117 48 chr1 1481619 1481655 -280712009 + L1MC/D LINE L1 1263 1295 -5426 1796 134 15 0 chr1 1481655 1481924 -280711740 + AluSq SINE Alu 2 274 -39 610 331 117 48 chr1 1481924 1482171 -280711493 + L1MC/D LINE L1 1295 1523 -5198 2120 90 40 10 chr1 1482171 1482472 -280711192 + AluSq SINE Alu 1 310 -3 610 331 117 48 chr1 1482472 1482805 -280710859 + L1MC/D LINE L1 1523 1986 -4735 1219 134 0 0 chr1 1482805 1482992 -280710672 + AluSq SINE Alu 127 313 0 428 274 79 51 chr1 1483212 1483253 -280710411 + L1MC/D LINE L1 2255 2293 -4247 2255 122 0 0 chr1 1483253 1483565 -280710099 + AluSq SINE Alu 1 312 -1 428 274 79 51 chr1 1483565 1484011 -280709653 + L1MC/D LINE L1 2293 2725 -3815 396 0 0 0 chr1 1484011 1484055 -280709609 + (CA)n Simple_repeat Simple_repeat 1 44 0 428 274 79 51 chr1 1484055 1484132 -280709532 + L1MC/D LINE L1 2725 2792 -3748 2372 76 0 0 chr1 1484132 1484433 -280709231 + AluY SINE Alu 1 301 -10 428 274 79 51 chr1 1484433 1484473 -280709191 + L1MC/D LINE L1 2792 2829 -3711 * 801 283 93 67 chr1 1484444 1484473 -280709191 + L1MC/D LINE L1 4064 4091 -2449 2298 77 16 16 chr1 1484473 1484784 -280708880 + AluSx SINE Alu 1 311 -1 801 283 93 67 chr1 1484784 1485529 -280708135 + L1MC/D LINE L1 4091 4879 -1661 1906 129 11 4 chr1 1485529 1485808 -280707856 + AluJo SINE Alu 1 281 -31 801 283 93 67 chr1 1485808 1486176 -280707488 + L1MC/D LINE L1 4879 5236 -1304 260 319 56 0 chr1 1486217 1486361 -280707303 + L1MC/D LINE L1 5558 5709 -831 233 136 0 23 chr1 1486375 1486419 -280707245 + L1M LINE L1 5700 5742 -996 2246 251 67 14 chr1 1486602 1487292 -280706372 + MER21B LTR ERV1 14 739 -124 2386 88 0 0 chr1 1487978 1488285 -280705379 - AluSc SINE Alu -2 307 1 2164 102 0 7 chr1 1489787 1490084 -280703580 + AluSq SINE Alu 1 296 -12 204 67 0 0 chr1 1490084 1490114 -280703550 + (CCAA)n Simple_repeat Simple_repeat 2 31 0 236 325 17 51 chr1 1493186 1493303 -280700361 - MIR SINE MIR -47 215 103 655 247 36 10 chr1 1493495 1493927 -280699737 + MLT1D LTR MaLR 35 505 0 189 146 0 24 chr1 1494354 1494395 -280699269 - L2 LINE L2 -206 3066 3027 327 365 14 28 chr1 1495104 1495249 -280698415 + L1MC/D LINE L1 6006 6148 -2054 2229 91 10 0 chr1 1496972 1497269 -280696395 + AluSq SINE Alu 1 300 -13 682 269 143 11 chr1 1498366 1498730 -280694934 + LTR52 LTR ERVL 2 413 -8 698 139 123 0 chr1 1498949 1499071 -280694593 - FRAM SINE Alu -39 137 1 1384 145 110 4 chr1 1499519 1499774 -280693890 + AluJo SINE Alu 1 282 -30 2347 94 0 0 chr1 1500040 1500349 -280693315 + AluY SINE Alu 1 309 -2 345 374 67 5 chr1 1500918 1501113 -280692551 - MIR SINE MIR -16 246 40 207 69 0 0 chr1 1501132 1501161 -280692503 + (TGAA)n Simple_repeat Simple_repeat 4 32 0 22 35 0 0 chr1 1501634 1501663 -280692001 + AT_rich Low_complexity Low_complexity 1 29 0 180 0 0 0 chr1 1503328 1503348 -280690316 + (TGAA)n Simple_repeat Simple_repeat 4 23 0 2224 85 0 0 chr1 1503689 1503972 -280689692 + AluY SINE Alu 1 332 0 355 61 0 0 chr1 1503972 1504021 -280689643 + (CAAAA)n Simple_repeat Simple_repeat 2 145 0 2581 150 23 48 chr1 1504367 1504928 -280688736 + LTR10A LTR ERV1 1 547 -62 933 172 0 0 chr1 1506736 1506916 -280686748 + G-rich Low_complexity Low_complexity 1 180 0 405 141 0 0 chr1 1506916 1506987 -280686677 + (GGGGA)n Simple_repeat Simple_repeat 1 71 0 22 0 0 0 chr1 1509962 1509984 -280683680 + AT_rich Low_complexity Low_complexity 1 22 0 22 35 0 0 chr1 1510729 1510758 -280682906 + AT_rich Low_complexity Low_complexity 1 29 0 650 266 77 0 chr1 1510962 1511210 -280682454 + L1M3 LINE L1 5283 5549 -634 739 130 84 0 chr1 1511212 1511343 -280682321 + L1MB2 LINE L1 6029 6170 -1 2184 102 0 16 chr1 1511349 1511654 -280682010 + AluSq SINE Alu 1 300 -13 546 271 62 71 chr1 1512442 1512767 -280680897 + MLT1C LTR MaLR 5 326 -64 595 189 27 0 chr1 1512769 1512880 -280680784 - FLAM_A SINE Alu -5 137 24 260 261 29 0 chr1 1512886 1512955 -280680709 + MLT1C LTR MaLR 310 380 -10 858 266 88 10 chr1 1512955 1513252 -280680412 + MLT1A1 LTR MaLR 3 322 -43 195 42 0 0 chr1 1513732 1513756 -280679908 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 231 209 0 0 chr1 1513823 1513866 -280679798 + L1ME4a LINE L1 6074 6116 -5 242 358 12 0 chr1 1514206 1514287 -280679377 - L2 LINE L2 -7 3306 3225 476 354 54 57 chr1 1515268 1515305 -280678359 + L1MC4a LINE L1 6151 6187 -1621 2186 123 0 0 chr1 1515305 1515607 -280678057 + AluSx SINE Alu 1 302 -10 476 354 54 57 chr1 1515607 1515883 -280677781 + L1MC4a LINE L1 6187 6463 -1345 283 348 55 8 chr1 1516042 1516278 -280677386 + L1MC4 LINE L1 6780 7026 -1016 300 160 0 0 chr1 1516282 1516332 -280677332 + Alu SINE Alu 1 50 -252 1976 124 3 10 chr1 1516332 1516630 -280677034 + AluSx SINE Alu 6 301 -11 1989 124 7 13 chr1 1517769 1518075 -280675589 - AluJo SINE Alu -8 304 1 303 292 39 0 chr1 1518346 1518476 -280675188 + Charlie1 DNA MER1_type 19 153 -2608 1166 248 58 100 chr1 1518482 1518539 -280675125 + Charlie1 DNA MER1_type 2083 2141 -620 2159 100 0 26 chr1 1518539 1518848 -280674816 - AluSx SINE Alu -11 301 1 1166 248 58 100 chr1 1518848 1519479 -280674185 + Charlie1 DNA MER1_type 2141 2742 -19 264 281 9 18 chr1 1519866 1519980 -280673684 + C-rich Low_complexity Low_complexity 1 113 0 492 251 86 29 chr1 1520111 1520286 -280673378 - MER63A DNA MER1_type -25 185 1 1260 286 133 10 chr1 1521475 1522100 -280671564 + L1MC3 LINE L1 6898 7599 -186 210 357 84 32 chr1 1523219 1523373 -280670291 - MIR SINE MIR -76 186 25 * 438 303 118 22 chr1 1523370 1523548 -280670116 + MIR SINE MIR 14 208 -54 1294 266 189 36 chr1 1523618 1523692 -280669972 + HAL1 LINE L1 973 1034 -1473 2483 50 0 0 chr1 1523692 1523989 -280669675 + AluY SINE Alu 1 297 -14 1294 266 189 36 chr1 1523989 1525205 -280668459 + HAL1 LINE L1 1034 2461 -46 22 0 0 0 chr1 1525237 1525259 -280668405 + AT_rich Low_complexity Low_complexity 1 22 0 2250 99 3 0 chr1 1526070 1526373 -280667291 - AluSx SINE Alu -8 304 1 21 0 0 0 chr1 1528860 1528881 -280664783 + GC_rich Low_complexity Low_complexity 1 21 0 764 235 76 11 chr1 1530061 1530532 -280663132 + MER74A LTR ERVL 25 554 -4 198 186 47 0 chr1 1530574 1530617 -280663047 + MIR SINE MIR 28 72 -190 473 252 97 0 chr1 1530805 1530960 -280662704 + MER58 DNA MER1_type 64 233 -108 228 262 27 57 chr1 1531569 1531734 -280661930 - MIR SINE MIR -15 247 43 224 253 93 93 chr1 1533332 1533494 -280660170 - MIR3 SINE MIR -46 162 1 339 269 74 27 chr1 1534177 1534326 -280659338 + MLT1D LTR MaLR 1 156 -349 1031 279 45 5 chr1 1535503 1535929 -280657735 + L1MB3 LINE L1 2568 3010 -3136 715 185 31 8 chr1 1535937 1536067 -280657597 - AluJb SINE Alu -179 133 1 362 238 58 10 chr1 1536067 1536199 -280657465 + L1MB3 LINE L1 3007 3147 -2999 1673 140 4 0 chr1 1536199 1536449 -280657215 + AluSx SINE Alu 1 251 -61 362 238 58 10 chr1 1536449 1536488 -280657176 + L1MB3 LINE L1 3147 3183 -2963 * 6819 212 30 38 chr1 1536479 1537138 -280656526 + L1MB3 LINE L1 3489 4152 -2031 2439 59 0 3 chr1 1537138 1537444 -280656220 - AluY SINE Alu -6 305 1 6819 212 30 38 chr1 1537444 1538694 -280654970 + L1MB3 LINE L1 4152 5410 -773 2112 128 0 3 chr1 1538694 1538999 -280654665 + AluSx SINE Alu 1 304 -8 6819 212 30 38 chr1 1538999 1539228 -280654436 + L1MB3 LINE L1 5410 5639 -544 2137 131 0 0 chr1 1539228 1539534 -280654130 + AluJb SINE Alu 1 306 -6 6819 212 30 38 chr1 1539534 1540053 -280653611 + L1MB3 LINE L1 5639 6133 -50 1653 164 13 30 chr1 1540053 1540358 -280653306 + AluSx SINE Alu 1 300 -12 6819 212 30 38 chr1 1540358 1540409 -280653255 + L1MB3 LINE L1 6133 6183 0 543 271 90 24 chr1 1540404 1540659 -280653005 + L1MB5 LINE L1 5814 6085 -89 * 211 309 43 0 chr1 1542350 1542444 -280651220 + L2 LINE L2 2220 2317 -997 812 158 0 0 chr1 1543747 1543867 -280649797 + AluSq/x SINE Alu 1 120 -193 2138 121 3 3 chr1 1543922 1544229 -280649435 - AluSx SINE Alu -5 307 1 1578 161 16 71 chr1 1544354 1544538 -280649126 - AluJo SINE Alu -9 293 131 2032 120 3 13 chr1 1544538 1544674 -280648990 + AluSx SINE Alu 1 137 -175 2250 81 0 7 chr1 1544674 1544969 -280648695 + AluSc SINE Alu 1 293 -16 2032 120 3 13 chr1 1544969 1545132 -280648532 + AluSx SINE Alu 137 297 -15 1578 161 16 71 chr1 1545132 1545257 -280648407 - AluJo SINE Alu -171 131 1 2541 54 0 10 chr1 1545813 1546126 -280647538 + AluY SINE Alu 1 310 -1 2421 57 0 0 chr1 1547602 1547901 -280645763 + AluY SINE Alu 2 300 -11 1830 121 43 0 chr1 1549444 1549726 -280643938 + AluSg SINE Alu 1 294 -16 398 264 0 3 chr1 1550484 1550792 -280642872 + (TG)n Simple_repeat Simple_repeat 1 306 0 210 350 68 0 chr1 1551097 1551214 -280642450 - MIR SINE MIR -78 184 60 331 329 5 91 chr1 1551908 1551971 -280641693 + L1ME LINE L1 5497 5564 -557 2555 49 3 0 chr1 1551971 1552279 -280641385 - AluY SINE Alu -2 309 1 331 329 5 91 chr1 1552279 1552425 -280641239 + L1ME LINE L1 5564 5688 -433 562 168 0 58 chr1 1552563 1552754 -280640910 + (CA)n Simple_repeat Simple_repeat 1 180 0 184 80 0 0 chr1 1554108 1554133 -280639531 + (TTTTG)n Simple_repeat Simple_repeat 1 90 0 2166 86 7 0 chr1 1554133 1554411 -280639253 - AluY SINE Alu -31 280 1 1562 128 0 0 chr1 1554411 1554628 -280639036 - AluSx SINE Alu -95 217 1 1631 114 4 0 chr1 1555072 1555299 -280638365 - AluSq SINE Alu -85 228 1 436 341 130 9 chr1 1555466 1555689 -280637975 - MIR SINE MIR 0 262 13 596 266 95 37 chr1 1555901 1556280 -280637384 + LTR16C LTR ERVL 90 490 -1 1314 238 109 3 chr1 1556779 1557189 -280636475 - MLT1C LTR MaLR 0 467 12 1171 223 40 9 chr1 1557481 1557804 -280635860 + MLT1A1 LTR MaLR 1 333 -32 1556 167 30 0 chr1 1557863 1558132 -280635532 - AluJo SINE Alu -6 306 30 434 309 85 13 chr1 1559001 1559237 -280634427 + ERVL LTR ERVL 2042 2294 -3470 2112 96 4 0 chr1 1559782 1560086 -280633578 + AluSc SINE Alu 1 305 0 2345 97 0 3 chr1 1560097 1560407 -280633257 + AluSc SINE Alu 1 309 0 834 134 0 8 chr1 1560559 1560686 -280632978 + FLAM_C SINE Alu 1 126 -17 958 256 99 6 chr1 1560903 1561267 -280632397 + MLT1C LTR MaLR 53 450 -17 531 0 0 0 chr1 1562164 1562223 -280631441 + (TTATG)n Simple_repeat Simple_repeat 2 60 0 1952 108 29 4 chr1 1562223 1562501 -280631163 - AluSg SINE Alu -25 285 1 1797 167 7 0 chr1 1563170 1563470 -280630194 - AluJb SINE Alu -10 302 1 2324 90 0 0 chr1 1563741 1564040 -280629624 - AluSq SINE Alu -14 299 1 419 287 74 0 chr1 1564390 1564512 -280629152 + MIR3 SINE MIR 33 163 -45 1211 176 124 11 chr1 1566216 1566483 -280627181 + AluSg1 SINE Alu 1 297 -12 1858 141 40 0 chr1 1566483 1566781 -280626883 + AluSx SINE Alu 1 310 -2 257 260 207 13 chr1 1566986 1567136 -280626528 + MLT1A1 LTR MaLR 390 568 -25 1404 254 42 34 chr1 1567161 1567479 -280626185 - L1ME1 LINE L1 -269 5966 5641 2466 77 0 3 chr1 1567479 1567792 -280625872 - AluSx SINE Alu 0 312 1 1404 254 42 34 chr1 1567792 1567950 -280625714 - L1ME1 LINE L1 -594 5641 5486 2243 110 3 0 chr1 1567951 1568260 -280625404 - AluSx SINE Alu -2 310 1 213 108 0 0 chr1 1568270 1568307 -280625357 + (TTTTA)n Simple_repeat Simple_repeat 4 40 0 712 147 0 9 chr1 1568310 1568419 -280625245 - FLAM_C SINE Alu -25 118 11 655 223 75 63 chr1 1568437 1568709 -280624955 - L1ME1 LINE L1 -752 5463 5216 643 264 22 4 chr1 1568754 1568985 -280624679 - L1ME1 LINE L1 -6123 273 39 2161 100 0 16 chr1 1569018 1569329 -280624335 + AluSx SINE Alu 1 306 -6 444 345 65 5 chr1 1569434 1569634 -280624030 - L1MCa LINE L1 -4813 1613 1402 748 347 79 29 chr1 1569652 1570131 -280623533 - HERV16 LTR ERVL -4192 804 302 2292 77 0 10 chr1 1570135 1570458 -280623206 - AluY SINE Alu 0 323 4 2404 69 0 3 chr1 1570461 1570764 -280622900 - AluY SINE Alu -4 307 6 544 236 55 83 chr1 1570773 1571193 -280622471 + Charlie2 DNA MER1_type 2368 2775 -87 902 140 7 7 chr1 1571200 1571343 -280622321 + FRAM SINE Alu 4 146 -30 440 208 125 0 chr1 1572654 1572774 -280620890 - HERV16 LTR ERVL -4859 137 3 425 308 41 56 chr1 1572826 1573164 -280620500 - LTR16B LTR ERVL -50 414 82 1267 146 13 50 chr1 1573319 1573479 -280620185 - AluJb SINE Alu -14 298 134 2201 93 7 0 chr1 1573479 1573770 -280619894 - AluSc SINE Alu -15 294 2 2080 132 0 0 chr1 1573771 1574067 -280619597 - AluSg SINE Alu -14 296 1 1267 146 13 50 chr1 1574067 1574143 -280619521 - AluJb SINE Alu -177 135 69 582 335 14 7 chr1 1574145 1574420 -280619244 - L1MC4 LINE L1 -998 7044 6768 443 229 0 0 chr1 1574479 1574575 -280619089 + MER3 DNA MER1_type 38 133 -76 2120 114 7 3 chr1 1574578 1574885 -280618779 - AluSq SINE Alu -5 308 1 599 109 11 0 chr1 1574953 1575045 -280618619 - AluSg/x SINE Alu -1 308 216 1087 162 113 0 chr1 1575049 1575278 -280618386 + AluSx SINE Alu 58 312 0 718 205 0 32 chr1 1575286 1575442 -280618222 + FRAM SINE Alu 1 151 -15 865 140 12 30 chr1 1577771 1577935 -280615729 - AluJo SINE Alu -151 161 1 2383 81 3 0 chr1 1577944 1578254 -280615410 - AluY SINE Alu 0 311 1 1552 262 27 20 chr1 1578312 1578823 -280614841 + L1MB5 LINE L1 5659 6173 -1 1021 196 149 6 chr1 1580608 1580950 -280612714 + MLT1C LTR MaLR 6 396 -71 500 283 12 12 chr1 1581949 1582115 -280611549 + MER46C DNA MER2_type 1 166 -172 2273 81 0 3 chr1 1583501 1583797 -280609867 + AluY SINE Alu 1 295 -16 1614 191 3 13 chr1 1583808 1584107 -280609557 + AluJo SINE Alu 2 297 -15 627 265 58 51 chr1 1584108 1584222 -280609442 - L1ME LINE L1 -585 5585 5473 2395 61 0 3 chr1 1584222 1584517 -280609147 - AluY SINE Alu -17 294 1 627 265 58 51 chr1 1584517 1584659 -280609005 - L1ME LINE L1 -697 5473 5327 1240 77 12 6 chr1 1584662 1584831 -280608833 - AluSg/x SINE Alu -20 290 121 873 130 0 125 chr1 1584896 1585080 -280608584 - FRAM SINE Alu -15 161 1 317 244 125 12 chr1 1585082 1585242 -280608422 - L1ME LINE L1 -815 5331 5154 563 234 115 40 chr1 1585569 1585795 -280607869 - HAL1 LINE L1 -950 1557 1315 570 235 47 6 chr1 1586027 1586197 -280607467 - Charlie1b DNA MER1_type -1 522 346 285 169 200 0 chr1 1586215 1586280 -280607384 - Charlie1b DNA MER1_type -292 231 154 2205 102 7 3 chr1 1586398 1586703 -280606961 - AluSq SINE Alu -7 306 1 217 328 35 53 chr1 1586705 1586876 -280606788 + L2 LINE L2 1999 2166 -1148 213 288 82 14 chr1 1587024 1587170 -280606494 + L2 LINE L2 2862 3017 -296 926 167 13 9 chr1 1590847 1591161 -280602503 + (CTCA)n Simple_repeat Simple_repeat 1 315 0 2139 121 0 3 chr1 1591908 1592205 -280601459 + AluSg SINE Alu 2 297 -13 22 56 0 0 chr1 1592311 1592347 -280601317 + AT_rich Low_complexity Low_complexity 1 36 0 2340 81 0 0 chr1 1594239 1594535 -280599129 - AluSx SINE Alu -16 296 1 2253 119 0 0 chr1 1595021 1595331 -280598333 - AluSx SINE Alu -2 310 1 339 218 26 0 chr1 1595334 1595412 -280598252 - AluJ/FRAM SINE Alu 0 302 223 2283 101 0 0 chr1 1595475 1595782 -280597882 - AluSx SINE Alu -5 307 1 22 0 0 0 chr1 1596057 1596079 -280597585 + GC_rich Low_complexity Low_complexity 1 22 0 236 286 86 19 chr1 1596838 1596943 -280596721 - L1ME3A LINE L1 -40 6130 6019 336 357 96 43 chr1 1597044 1597328 -280596336 - L1MC5 LINE L1 -33 7928 7614 1980 112 39 3 chr1 1597328 1597613 -280596051 - AluSx SINE Alu -17 295 1 336 357 96 43 chr1 1597613 1597743 -280595921 - L1MC5 LINE L1 -347 7614 7492 1353 280 64 22 chr1 1597750 1598382 -280595282 - L1MC4 LINE L1 -6 8036 7291 2409 62 10 0 chr1 1598382 1598690 -280594974 + AluY SINE Alu 1 311 0 838 215 61 65 chr1 1599156 1599536 -280594128 + MLT1C LTR MaLR 47 390 0 229 320 39 16 chr1 1599653 1599781 -280593883 - L1P LINE L1 -780 5385 5255 2315 80 3 0 chr1 1599823 1600123 -280593541 - AluY SINE Alu -10 301 1 2215 104 0 0 chr1 1600174 1600472 -280593192 - AluSx SINE Alu -14 298 1 319 367 30 60 chr1 1600473 1600672 -280592992 - L1M4 LINE L1 -975 5171 4979 480 254 99 87 chr1 1600745 1601100 -280592564 - L1M4 LINE L1 -1304 4842 4484 2324 87 0 10 chr1 1601100 1601412 -280592252 - AluY SINE Alu 0 311 3 728 319 27 42 chr1 1601442 1601714 -280591950 - L1MC5 LINE L1 -35 7926 7663 2311 98 0 0 chr1 1601714 1602011 -280591653 - AluSx SINE Alu -15 297 1 728 319 27 42 chr1 1602011 1602220 -280591444 - L1MC5 LINE L1 -298 7663 7452 706 257 88 38 chr1 1602231 1602560 -280591104 - L1M4 LINE L1 -1638 4508 4152 2323 88 3 0 chr1 1602560 1602866 -280590798 - AluSp SINE Alu -6 307 1 706 257 88 38 chr1 1602866 1603054 -280590610 - L1M4 LINE L1 -1994 4152 3975 2368 103 0 0 chr1 1603056 1603368 -280590296 - AluSx SINE Alu 0 312 1 2089 143 0 0 chr1 1603724 1604032 -280589632 + AluSx SINE Alu 1 308 -4 2432 65 3 0 chr1 1604073 1604381 -280589283 - AluY SINE Alu -2 309 1 2245 89 24 0 chr1 1604497 1604790 -280588874 - AluSx SINE Alu -10 302 3 368 312 103 24 chr1 1604903 1605243 -280588421 - HAL1 LINE L1 -2136 371 5 1124 148 0 6 chr1 1605815 1605997 -280587667 - AluJb SINE Alu -1 311 131 2519 58 0 0 chr1 1605997 1606308 -280587356 - AluY SINE Alu 0 311 1 623 182 0 45 chr1 1606427 1606559 -280587105 + AluJb SINE Alu 2 127 -185 1685 130 22 4 chr1 1606659 1606936 -280586728 + AluSg SINE Alu 26 307 -3 1226 193 100 15 chr1 1606936 1607267 -280586397 - MSTB LTR MaLR -66 360 2 919 253 58 16 chr1 1607267 1607565 -280586099 + MLT1A1 LTR MaLR 55 365 0 267 254 30 0 chr1 1607671 1607763 -280585901 + L1MEc LINE L1 1178 1233 -4886 370 294 109 42 chr1 1607937 1608175 -280585489 + L1M4 LINE L1 3652 3905 -2241 280 208 94 38 chr1 1608188 1608294 -280585370 - MER31A LTR ERV1 -21 464 353 1450 114 5 0 chr1 1610432 1610633 -280583031 + AluSg/x SINE Alu 66 267 -43 1007 169 0 6 chr1 1610633 1610843 -280582821 + AluSp SINE Alu 120 328 0 1091 184 5 19 chr1 1610843 1611049 -280582615 - AluJb SINE Alu -27 285 83 436 241 17 0 chr1 1611050 1611082 -280582582 - L1M4 LINE L1 -457 5727 5697 2096 118 3 3 chr1 1611082 1611378 -280582286 - AluSx SINE Alu -16 296 1 436 241 17 0 chr1 1611378 1611461 -280582203 - L1M4 LINE L1 -487 5697 5610 1948 155 7 0 chr1 1611461 1611757 -280581907 - AluSx SINE Alu -14 298 1 1220 172 48 99 chr1 1611757 1612071 -280581593 - AluJb SINE Alu -14 298 1 2369 66 0 10 chr1 1612072 1612373 -280581291 - AluY SINE Alu -13 298 1 804 164 0 46 chr1 1612373 1612525 -280581139 - AluJo SINE Alu -167 145 1 187 308 77 0 chr1 1612981 1613059 -280580605 - L2 LINE L2 -939 2375 2292 2328 51 10 3 chr1 1614090 1614384 -280579280 - AluY SINE Alu -15 296 1 1621 133 10 47 chr1 1614384 1614685 -280578979 - AluSx SINE Alu -22 290 1 369 210 43 43 chr1 1615539 1615677 -280577987 + (CGGGG)n Simple_repeat Simple_repeat 4 141 0 2474 47 0 0 chr1 1615783 1616081 -280577583 + AluSx SINE Alu 1 298 -14 1680 153 36 19 chr1 1616430 1616737 -280576927 - AluJb SINE Alu 0 312 1 962 96 75 91 chr1 1618368 1618526 -280575138 - MLT2D LTR ERVL -137 277 121 2196 88 0 23 chr1 1618526 1618831 -280574833 - AluY SINE Alu -13 298 1 962 96 75 91 chr1 1618831 1618871 -280574793 - MLT2D LTR ERVL -293 121 82 541 246 15 0 chr1 1618871 1619005 -280574659 + L1M3 LINE L1 5686 5821 -350 2177 102 3 0 chr1 1619130 1619424 -280574240 - AluY SINE Alu -16 295 1 2290 75 0 3 chr1 1619424 1619718 -280573946 - AluY SINE Alu -18 293 1 2229 82 17 0 chr1 1619718 1620012 -280573652 - AluSx SINE Alu -13 299 1 1040 278 49 11 chr1 1620015 1620482 -280573182 - L1M4 LINE L1 -2685 3461 2977 418 235 10 0 chr1 1620619 1620717 -280572947 - MER81 DNA DNA -15 99 1 203 280 56 0 chr1 1620794 1620937 -280572727 + (TAGG)n Simple_repeat Simple_repeat 4 154 0 * 329 292 39 7 chr1 1620895 1621049 -280572615 + (TATG)n Simple_repeat Simple_repeat 4 162 0 218 396 0 0 chr1 1621167 1621321 -280572343 + (TG)n Simple_repeat Simple_repeat 2 155 0 * 275 291 53 0 chr1 1621292 1621517 -280572147 + (TATG)n Simple_repeat Simple_repeat 1 236 0 180 0 0 0 chr1 1621807 1621827 -280571837 + (CA)n Simple_repeat Simple_repeat 2 21 0 2379 96 3 0 chr1 1621875 1622187 -280571477 + AluSp SINE Alu 1 313 0 2393 91 0 0 chr1 1622203 1622512 -280571152 + AluSc SINE Alu 1 309 0 2055 130 0 10 chr1 1622561 1622869 -280570795 + AluJb SINE Alu 1 305 -7 275 237 99 30 chr1 1623252 1623383 -280570281 + L1MC5 LINE L1 7361 7500 -461 331 263 94 12 chr1 1623401 1623561 -280570103 + L1M4 LINE L1 4836 5008 -1138 251 269 2 7 chr1 1623823 1624253 -280569411 + (CA)n Simple_repeat Simple_repeat 1 428 0 460 298 0 0 chr1 1624271 1624432 -280569232 + (CA)n Simple_repeat Simple_repeat 1 161 0 230 228 0 11 chr1 1624457 1624549 -280569115 + (CA)n Simple_repeat Simple_repeat 1 91 0 335 340 0 0 chr1 1624985 1625135 -280568529 + (TG)n Simple_repeat Simple_repeat 1 150 0 2376 61 0 19 chr1 1626739 1627077 -280566587 + AluY SINE Alu 1 311 0 370 250 43 0 chr1 1627659 1627775 -280565889 + L1M4 LINE L1 4897 5017 -1129 381 259 91 15 chr1 1628523 1628720 -280564944 + MER89 LTR ERV1 272 483 -76 768 261 123 23 chr1 1629621 1630012 -280563652 - MLT1D LTR MaLR -7 498 69 2247 85 3 0 chr1 1630518 1630811 -280562853 - AluSx SINE Alu -18 294 1 1515 130 9 4 chr1 1630931 1631161 -280562503 + AluJb SINE Alu 1 231 -81 2215 119 0 0 chr1 1631452 1631762 -280561902 + AluJo SINE Alu 1 310 -2 335 228 0 33 chr1 1631771 1631951 -280561713 + (TG)n Simple_repeat Simple_repeat 1 174 0 338 309 16 24 chr1 1631956 1632082 -280561582 + (CGTG)n Simple_repeat Simple_repeat 2 126 0 2221 111 0 0 chr1 1633939 1634236 -280559428 - AluSg SINE Alu -13 297 1 403 111 0 0 chr1 1634343 1634406 -280559258 - AluJo SINE Alu -7 295 233 678 254 94 11 chr1 1634410 1634470 -280559194 - AluJo SINE Alu -116 196 142 252 100 0 0 chr1 1634470 1634510 -280559154 + (TA)n Simple_repeat Simple_repeat 2 41 0 678 254 94 11 chr1 1634510 1634630 -280559034 - AluJo SINE Alu -170 142 1 2304 93 6 10 chr1 1634650 1634962 -280558702 - AluY SINE Alu 0 311 1 326 169 31 0 chr1 1634962 1635027 -280558637 + MSTB LTR MaLR 358 424 -2 1793 149 3 29 chr1 1635652 1635960 -280557704 - AluJb SINE Alu -12 300 1 197 320 33 33 chr1 1637730 1637852 -280555812 + L2 LINE L2 3166 3287 -26 2218 100 0 19 chr1 1640417 1640727 -280552937 - AluSx SINE Alu -3 309 6 514 344 104 51 chr1 1640752 1640990 -280552674 - HAL1b LINE L1 -1033 3317 3093 1976 136 7 13 chr1 1640990 1641298 -280552366 - AluJb SINE Alu -6 306 1 514 344 104 51 chr1 1641298 1641406 -280552258 - HAL1b LINE L1 -1257 3093 2992 2274 79 3 13 chr1 1641406 1641710 -280551954 - AluSq SINE Alu -12 301 1 514 344 104 51 chr1 1641710 1641747 -280551917 - HAL1b LINE L1 -1358 2992 1 423 348 112 38 chr1 1642579 1643540 -280550124 - L1MEd LINE L1 -4863 1256 224 1709 132 16 42 chr1 1644339 1644649 -280549015 + AluJo SINE Alu 5 306 -6 333 339 52 64 chr1 1645107 1645340 -280548324 - L1MC4 LINE L1 0 8042 7813 281 253 99 0 chr1 1646938 1647029 -280546635 - MER91B DNA MER1_type -90 100 1 1834 134 21 3 chr1 1649139 1649429 -280544235 - AluJb SINE Alu -17 295 1 1355 298 66 59 chr1 1649431 1649488 -280544176 - L1ME LINE L1 -579 5652 5597 832 266 19 10 chr1 1649488 1649695 -280543969 - MER3 DNA MER1_type 0 209 1 1355 298 66 59 chr1 1649695 1650335 -280543329 - L1ME LINE L1 -634 5597 4963 2272 91 0 3 chr1 1650335 1650633 -280543031 + AluSq SINE Alu 3 299 -14 1355 298 66 59 chr1 1650633 1650972 -280542692 - L1ME LINE L1 -1268 4963 4605 1746 157 17 10 chr1 1650972 1651266 -280542398 + AluJo SINE Alu 1 296 -16 1355 298 66 59 chr1 1651266 1651328 -280542336 - L1ME LINE L1 -1626 4605 4545 295 145 29 14 chr1 1651328 1651397 -280542267 + CT-rich Low_complexity Low_complexity 3 72 0 273 281 47 0 chr1 1651411 1651574 -280542090 - L1MEc LINE L1 -3921 2322 2163 1609 104 0 4 chr1 1651677 1651908 -280541756 + AluSq SINE Alu 1 230 -83 658 141 0 0 chr1 1652049 1652141 -280541523 - AluS SINE Alu -221 92 1 2484 237 60 50 chr1 1652175 1652566 -280541098 + L1ME1 LINE L1 4528 4914 -1252 1855 141 115 12 chr1 1652566 1652906 -280540758 + THE1C LTR MaLR 1 375 0 2484 237 60 50 chr1 1652906 1653295 -280540369 + L1ME1 LINE L1 4914 5298 -868 2250 91 0 13 chr1 1653295 1653593 -280540071 + AluSq SINE Alu 6 299 -14 2484 237 60 50 chr1 1653593 1654426 -280539238 + L1ME1 LINE L1 5298 6166 0 1863 146 17 3 chr1 1654475 1654763 -280538901 + AluSx SINE Alu 1 292 -20 363 152 0 43 chr1 1654763 1654855 -280538809 + GA-rich Low_complexity Low_complexity 1 88 0 808 100 5 58 chr1 1654861 1655051 -280538613 + (GGAA)n Simple_repeat Simple_repeat 1 180 0 1315 147 19 0 chr1 1655139 1655363 -280538301 + AluJb SINE Alu 97 324 0 403 217 70 10 chr1 1655369 1655489 -280538175 + AluJo SINE Alu 1 112 -190 216 111 0 0 chr1 1655489 1655525 -280538139 + (TA)n Simple_repeat Simple_repeat 2 37 0 403 217 70 10 chr1 1655525 1655652 -280538012 + AluJo SINE Alu 112 295 -7 2221 111 0 0 chr1 1655759 1656056 -280537608 + AluSg SINE Alu 1 297 -13 324 318 16 24 chr1 1657761 1657887 -280535777 + (CACG)n Simple_repeat Simple_repeat 2 126 0 327 238 0 28 chr1 1657892 1658073 -280535591 + (CA)n Simple_repeat Simple_repeat 1 176 0 2184 121 0 0 chr1 1658078 1658385 -280535279 - AluJo SINE Alu -5 307 1 1501 135 9 4 chr1 1658675 1658905 -280534759 - AluJb SINE Alu -81 231 1 2261 82 3 0 chr1 1659025 1659318 -280534346 + AluSx SINE Alu 1 294 -18 777 261 123 23 chr1 1659824 1660215 -280533449 + MLT1D LTR MaLR 69 498 -7 360 300 148 22 chr1 1661544 1661814 -280531850 + HAL1 LINE L1 903 1206 -1301 189 0 0 0 chr1 1662030 1662051 -280531613 + (A)n Simple_repeat Simple_repeat 1 21 0 2190 88 0 36 chr1 1662057 1662365 -280531299 - AluSg1 SINE Alu -12 297 1 579 243 32 46 chr1 1662370 1662588 -280531076 + L1MB2 LINE L1 5941 6155 -16 2333 74 0 13 chr1 1662599 1662911 -280530753 - AluY SINE Alu -3 308 1 231 173 0 0 chr1 1673563 1673615 -280520049 + (CAG)n Simple_repeat Simple_repeat 3 54 0 603 105 28 50 chr1 1679029 1679210 -280514454 + GA-rich Low_complexity Low_complexity 1 177 0 902 140 7 7 chr1 1680335 1680478 -280513186 - FRAM SINE Alu -30 146 4 544 236 55 83 chr1 1680485 1680905 -280512759 - Charlie2 DNA MER1_type -87 2775 2368 2377 73 0 3 chr1 1680914 1681216 -280512448 + AluY SINE Alu 6 306 -5 2306 68 0 40 chr1 1681219 1681540 -280512124 + AluY SINE Alu 4 311 0 2280 98 0 13 chr1 1681542 1681858 -280511806 + AluSx SINE Alu 1 312 0 2543 52 0 3 chr1 1681876 1682183 -280511481 + AluY SINE Alu 1 306 -5 2076 124 3 3 chr1 1682471 1682777 -280510887 - AluY SINE Alu -5 306 1 2305 71 0 3 chr1 1682777 1683071 -280510593 - AluY SINE Alu -18 293 1 2229 82 17 0 chr1 1683071 1683365 -280510299 - AluSx SINE Alu -13 299 1 1028 281 49 11 chr1 1683368 1683835 -280509829 - L1M4 LINE L1 -2685 3461 2977 418 235 10 0 chr1 1683972 1684070 -280509594 - MER81 DNA DNA -15 99 1 277 307 40 7 chr1 1684214 1684364 -280509300 + (TATG)n Simple_repeat Simple_repeat 4 158 0 225 395 0 0 chr1 1684450 1684602 -280509062 + (TG)n Simple_repeat Simple_repeat 2 153 0 266 312 52 0 chr1 1684642 1684796 -280508868 + (CGTA)n Simple_repeat Simple_repeat 2 163 0 265 391 0 0 chr1 1684821 1685000 -280508664 + (TG)n Simple_repeat Simple_repeat 2 180 0 218 318 53 7 chr1 1685006 1685157 -280508507 + (TACG)n Simple_repeat Simple_repeat 4 161 0 * 236 317 48 0 chr1 1685134 1685301 -280508363 + (TATG)n Simple_repeat Simple_repeat 4 178 0 202 348 17 0 chr1 1685370 1685488 -280508176 + (TATG)n Simple_repeat Simple_repeat 3 122 0 180 0 0 0 chr1 1685753 1685773 -280507891 + (CA)n Simple_repeat Simple_repeat 2 21 0 2394 93 3 0 chr1 1685821 1686133 -280507531 + AluSp SINE Alu 1 313 0 2393 91 0 0 chr1 1686149 1686458 -280507206 + AluSc SINE Alu 1 309 0 2023 134 0 10 chr1 1686507 1686814 -280506850 + AluJb SINE Alu 1 304 -8 275 237 99 30 chr1 1687197 1687328 -280506336 + L1MC5 LINE L1 7361 7500 -461 331 263 94 12 chr1 1687346 1687506 -280506158 + L1M4 LINE L1 4836 5008 -1138 409 278 3 0 chr1 1687799 1688409 -280505255 + (CA)n Simple_repeat Simple_repeat 1 612 0 230 228 0 11 chr1 1688434 1688526 -280505138 + (CA)n Simple_repeat Simple_repeat 1 91 0 335 340 0 0 chr1 1688962 1689112 -280504552 + (TG)n Simple_repeat Simple_repeat 1 150 0 820 117 0 83 chr1 1689838 1689983 -280503681 - FLAM_C SINE Alu 0 133 1 2197 87 3 7 chr1 1690659 1690957 -280502707 - AluSq SINE Alu -16 297 1 258 192 0 19 chr1 1690959 1691011 -280502653 + L3 LINE CR1 1369 1419 -158 1291 164 18 0 chr1 1691600 1691825 -280501839 + AluSq SINE Alu 3 231 -82 31 44 0 0 chr1 1691966 1692011 -280501653 + AT_rich Low_complexity Low_complexity 1 45 0 2387 61 0 3 chr1 1692025 1692319 -280501345 - AluY SINE Alu -16 295 3 1763 123 0 73 chr1 1693409 1693723 -280499941 - AluJb SINE Alu 0 430 146 2114 102 0 39 chr1 1693723 1693858 -280499806 + AluSq SINE Alu 2 141 -172 2426 65 3 0 chr1 1693858 1694164 -280499500 + AluY SINE Alu 1 307 -4 2114 102 0 39 chr1 1694164 1694333 -280499331 + AluSq SINE Alu 141 294 -19 1763 123 0 73 chr1 1694333 1694466 -280499198 - AluJb SINE Alu -284 146 5 1541 192 20 3 chr1 1696658 1696950 -280496714 - AluJb SINE Alu -15 297 1 2315 95 3 0 chr1 1696958 1697262 -280496402 - AluSp SINE Alu -8 305 1 1914 124 6 43 chr1 1697328 1697471 -280496193 + AluSg SINE Alu 1 148 -162 2388 84 0 0 chr1 1697471 1697779 -280495885 + AluY SINE Alu 1 308 -3 1914 124 6 43 chr1 1697779 1697957 -280495707 + AluSg SINE Alu 148 310 0 2272 95 0 0 chr1 1697972 1698266 -280495398 + AluSg SINE Alu 1 294 -16 844 121 0 35 chr1 1701478 1701641 -280492023 + FLAM_C SINE Alu 8 143 0 772 254 114 7 chr1 1701810 1702193 -280491471 + L1MC4 LINE L1 6478 6936 -1106 200 163 0 112 chr1 1703165 1703263 -280490401 + C-rich Low_complexity Low_complexity 1 87 0 193 104 0 42 chr1 1703617 1703665 -280489999 + (CGG)n Simple_repeat Simple_repeat 2 47 0 23 0 0 0 chr1 1704387 1704410 -280489254 + AT_rich Low_complexity Low_complexity 1 23 0 2251 71 3 26 chr1 1704417 1704726 -280488938 + AluY SINE Alu 1 302 -9 1948 121 0 20 chr1 1705103 1705400 -280488264 - AluSx SINE Alu -21 291 1 2503 55 0 7 chr1 1705572 1705880 -280487784 + AluY SINE Alu 1 306 -5 2404 95 0 0 chr1 1705991 1706299 -280487365 - AluSq SINE Alu -9 304 1 2288 90 0 3 chr1 1706447 1706747 -280486917 + AluY SINE Alu 1 299 -12 1315 142 5 5 chr1 1706918 1707115 -280486549 + AluSp SINE Alu 1 197 -116 353 43 0 0 chr1 1707115 1707162 -280486502 + AluSp SINE Alu 87 133 -170 1546 176 17 7 chr1 1707167 1707462 -280486202 + AluSp SINE Alu 3 300 -13 325 296 102 0 chr1 1707773 1707881 -280485783 + MIR SINE MIR 112 230 -32 1641 159 69 28 chr1 1708121 1708410 -280485254 - AluJb SINE Alu 0 312 12 2396 89 0 0 chr1 1708496 1708789 -280484875 - AluSg SINE Alu -17 293 1 264 371 108 36 chr1 1708943 1708979 -280484685 - L2 LINE L2 -4 3268 3236 1841 116 81 11 chr1 1708979 1709263 -280484401 - AluSg SINE Alu -6 304 1 264 371 108 36 chr1 1709263 1709533 -280484131 - L2 LINE L2 -36 3236 2940 218 320 120 0 chr1 1709554 1709629 -280484035 + L2 LINE L2 3187 3270 -2 1890 125 72 0 chr1 1709730 1710009 -280483655 + AluSx SINE Alu 1 299 -13 184 372 33 0 chr1 1710351 1710472 -280483192 + L2 LINE L2 2932 3056 -257 198 203 275 0 chr1 1710539 1710608 -280483056 + L2 LINE L2 3199 3286 -27 491 149 20 155 chr1 1710734 1710834 -280482830 + Charlie1a DNA MER1_type 1 76 -2685 2171 50 54 4 chr1 1710834 1711111 -280482553 - AluY SINE Alu -20 291 1 491 149 20 155 chr1 1711111 1711158 -280482506 + Charlie1a DNA MER1_type 76 128 -1327 1898 171 0 10 chr1 1711197 1711507 -280482157 + AluJb SINE Alu 1 307 -5 1291 221 81 23 chr1 1711515 1711699 -280481965 + Charlie1a DNA MER1_type 1040 1212 -1549 2506 75 3 0 chr1 1711699 1712005 -280481659 - AluY SINE Alu -4 307 1 1291 221 81 23 chr1 1712005 1712213 -280481451 + Charlie1a DNA MER1_type 1212 1455 0 298 307 0 0 chr1 1712904 1712992 -280480672 - L2 LINE L2 -285 3028 2941 355 300 100 12 chr1 1713208 1713368 -280480296 - MIR SINE MIR -5 257 84 350 274 46 57 chr1 1713741 1713792 -280479872 - L1ME4a LINE L1 0 6121 6071 895 130 0 36 chr1 1713792 1713930 -280479734 + AluJo SINE Alu 1 133 -169 350 274 46 57 chr1 1713930 1714053 -280479611 - L1ME4a LINE L1 -50 6071 5949 2401 90 7 0 chr1 1714112 1714411 -280479253 - AluSx SINE Alu -11 301 1 327 236 285 8 chr1 1714545 1714668 -280478996 + MIR SINE MIR 58 214 -48 492 208 178 10 chr1 1714765 1714866 -280478798 + FLAM_C SINE Alu 3 120 -23 210 37 0 0 chr1 1714910 1714937 -280478727 + (TC)n Simple_repeat Simple_repeat 1 27 0 792 165 16 0 chr1 1714977 1715098 -280478566 + AluJo SINE Alu 134 256 -56 1140 205 161 27 chr1 1715201 1715605 -280478059 - MLT1C LTR MaLR -2 465 8 962 195 12 0 chr1 1715757 1715921 -280477743 + FRAM SINE Alu 1 166 0 1986 167 0 3 chr1 1715937 1716249 -280477415 + AluSx SINE Alu 1 311 -1 2059 132 84 0 chr1 1716260 1716571 -280477093 + MER1B DNA MER1_type 1 337 0 2018 123 3 48 chr1 1716616 1716797 -280476867 - AluSg SINE Alu -8 302 139 2110 116 7 13 chr1 1716797 1717107 -280476557 - AluSx SINE Alu -4 308 1 2018 123 3 48 chr1 1717107 1717241 -280476423 - AluSg SINE Alu -171 139 1 1034 112 7 20 chr1 1717605 1717757 -280475907 - AluSg/x SINE Alu -23 289 140 282 159 0 0 chr1 1717757 1717801 -280475863 - Alu SINE Alu -256 44 1 438 307 116 24 chr1 1717842 1718223 -280475441 - MLT1H LTR MaLR -3 546 131 895 161 0 0 chr1 1718230 1718373 -280475291 + FLAM_C SINE Alu 1 143 0 264 268 0 0 chr1 1718547 1718603 -280475061 - L2 LINE L2 -9 3263 3208 277 478 25 76 chr1 1719152 1719466 -280474198 + AluSq SINE Alu 1 298 -5 2408 72 0 3 chr1 1719537 1719829 -280473835 - AluY SINE Alu -20 291 1 1833 114 23 75 chr1 1720709 1720896 -280472768 - AluSx SINE Alu -9 303 137 2544 77 0 0 chr1 1720896 1721207 -280472457 - AluY SINE Alu 0 311 1 1833 114 23 75 chr1 1721207 1721325 -280472339 - AluSx SINE Alu -175 137 14 1721 171 0 23 chr1 1721594 1721893 -280471771 + AluJo SINE Alu 1 292 -20 230 226 418 0 chr1 1722026 1722172 -280471492 + MER20 DNA MER1_type 6 212 -7 1457 163 42 54 chr1 1722320 1722651 -280471013 - L1MB5 LINE L1 -10 6164 5838 2370 86 0 16 chr1 1722667 1722971 -280470693 - AluY SINE Alu -11 300 2 972 81 89 0 chr1 1722971 1723095 -280470569 - AluSq/x SINE Alu -178 135 1 1277 173 28 4 chr1 1723095 1723344 -280470320 - L1MB5 LINE L1 -356 5824 5570 1958 118 36 4 chr1 1723641 1723920 -280469744 + AluSx SINE Alu 1 288 -24 2105 135 0 3 chr1 1723931 1724234 -280469430 + AluSc SINE Alu 1 302 -7 207 69 0 0 chr1 1724561 1724590 -280469074 + (TG)n Simple_repeat Simple_repeat 2 30 0 2088 123 0 3 chr1 1724590 1724874 -280468790 - AluSg SINE Alu -27 283 1 1304 141 0 5 chr1 1724874 1725066 -280468598 - AluSx SINE Alu -11 301 111 757 110 0 0 chr1 1725146 1725246 -280468418 - AluSx SINE Alu -210 102 3 2006 137 0 23 chr1 1725257 1725556 -280468108 - AluSx SINE Alu -20 292 1 629 252 0 0 chr1 1726022 1726145 -280467519 - FLAM_A SINE Alu -9 124 2 2509 84 0 0 chr1 1726377 1726685 -280466979 + AluY SINE Alu 1 308 -3 347 144 48 24 chr1 1726761 1726858 -280466806 + L1MC4 LINE L1 7885 8042 0 2382 97 0 0 chr1 1726902 1727200 -280466464 - AluSx SINE Alu -14 298 1 327 236 285 8 chr1 1727334 1727457 -280466207 + MIR SINE MIR 58 214 -48 492 208 178 10 chr1 1727554 1727655 -280466009 + FLAM_C SINE Alu 3 120 -23 210 37 0 0 chr1 1727699 1727726 -280465938 + (TC)n Simple_repeat Simple_repeat 1 27 0 792 165 16 0 chr1 1727766 1727887 -280465777 + FRAM SINE Alu 1 120 -56 1140 205 161 27 chr1 1727990 1728394 -280465270 - MLT1C LTR MaLR -2 465 8 962 195 12 0 chr1 1728546 1728710 -280464954 + FRAM SINE Alu 1 166 0 1986 167 0 3 chr1 1728726 1729038 -280464626 + AluSx SINE Alu 1 311 -1 2059 132 84 0 chr1 1729049 1729360 -280464304 + MER1B DNA MER1_type 1 337 0 2018 123 3 48 chr1 1729405 1729586 -280464078 - AluSg SINE Alu -8 302 139 2110 116 7 13 chr1 1729586 1729896 -280463768 - AluSx SINE Alu -4 308 1 2018 123 3 48 chr1 1729896 1730030 -280463634 - AluSg SINE Alu -171 139 1 1034 112 7 20 chr1 1730394 1730546 -280463118 - AluSg/x SINE Alu -23 289 140 282 159 0 0 chr1 1730546 1730590 -280463074 - Alu SINE Alu -256 44 1 438 307 116 24 chr1 1730631 1731012 -280462652 - MLT1H LTR MaLR -3 546 131 895 161 0 0 chr1 1731019 1731162 -280462502 + FLAM_C SINE Alu 1 143 0 264 268 0 0 chr1 1731336 1731392 -280462272 - L2 LINE L2 -9 3263 3208 424 318 132 38 chr1 1731851 1731941 -280461723 - L2 LINE L2 -529 2785 2705 1604 181 85 0 chr1 1731941 1732222 -280461442 + AluJo SINE Alu 1 305 -7 424 318 132 38 chr1 1732222 1732502 -280461162 - L2 LINE L2 -609 2705 2380 1929 134 0 28 chr1 1732766 1733049 -280460615 - AluSx SINE Alu -37 275 1 328 280 103 37 chr1 1733058 1733262 -280460402 - L2 LINE L2 -1390 1924 1704 1918 112 40 11 chr1 1733262 1733539 -280460125 - AluSx SINE Alu 0 312 28 1321 166 86 43 chr1 1733764 1734042 -280459622 + AluJo SINE Alu 22 311 -1 2219 121 7 0 chr1 1734058 1734355 -280459309 + AluSx SINE Alu 1 299 -13 2351 86 3 13 chr1 1735004 1735317 -280458347 - AluY SINE Alu -1 310 1 2322 93 7 7 chr1 1735418 1735719 -280457945 - AluSg1 SINE Alu -8 301 1 2127 117 23 3 chr1 1735750 1736049 -280457615 + AluSq SINE Alu 1 305 -8 601 150 97 9 chr1 1736759 1736872 -280456792 + L2 LINE L2 3188 3310 -3 1180 60 142 87 chr1 1736878 1736949 -280456715 - MER30 DNA MER1_type 0 230 164 2201 98 21 0 chr1 1736949 1737235 -280456429 - AluSq SINE Alu -21 292 1 1180 60 142 87 chr1 1737235 1737246 -280456418 - MER30 DNA MER1_type -66 164 155 2445 76 0 0 chr1 1737246 1737547 -280456117 - AluY SINE Alu -10 301 1 1180 60 142 87 chr1 1737547 1737681 -280455983 - MER30 DNA MER1_type -75 155 1 296 287 74 0 chr1 1737685 1737807 -280455857 + L1MC/D LINE L1 5736 5866 -1942 2098 117 23 7 chr1 1737980 1738280 -280455384 + AluSq SINE Alu 1 305 -8 2197 97 0 0 chr1 1738626 1738904 -280454760 - AluY SINE Alu -22 289 12 2442 84 0 0 chr1 1738931 1739239 -280454425 - AluY SINE Alu -3 308 1 2229 93 26 10 chr1 1739874 1740176 -280453488 - AluSg1 SINE Alu -1 308 2 550 176 213 0 chr1 1740193 1740301 -280453363 - FLAM_C SINE Alu -2 131 1 1734 165 30 3 chr1 1741459 1741756 -280451908 + AluJb SINE Alu 1 305 -7 1349 156 45 102 chr1 1741985 1742299 -280451365 - AluJo SINE Alu -16 296 1 482 190 86 0 chr1 1742309 1742425 -280451239 - L1MC4 LINE L1 -480 7562 7437 207 0 0 0 chr1 1742737 1742760 -280450904 + (TTA)n Simple_repeat Simple_repeat 2 24 0 1185 215 70 37 chr1 1742773 1743043 -280450621 - AluJo SINE Alu -33 279 1 2019 104 0 4 chr1 1743089 1743358 -280450306 - AluSx SINE Alu -10 302 35 266 98 0 44 chr1 1743494 1743546 -280450118 - Alu SINE Alu -9 291 249 1336 98 0 0 chr1 1743562 1743736 -280449928 - AluY SINE Alu -11 300 127 2222 142 6 0 chr1 1743774 1744127 -280449537 - L1PA16 LINE L1 -6 6160 5806 1285 47 0 35 chr1 1744152 1744322 -280449342 - L1PA5 LINE L1 -4 6150 5987 988 58 0 50 chr1 1744352 1744491 -280449173 - AluY SINE Alu -179 132 1 261 270 0 16 chr1 1744493 1744557 -280449107 + C-rich Low_complexity Low_complexity 1 62 0 325 129 0 47 chr1 1744716 1744816 -280448848 - AluJo SINE Alu -167 135 1 * 1243 224 101 48 chr1 1744816 1744900 -280448764 - MER119 DNA MER1_type -95 488 410 2184 130 3 0 chr1 1744900 1745201 -280448463 + AluSx SINE Alu 5 306 -6 1243 224 101 48 chr1 1745201 1745551 -280448113 - MER119 DNA MER1_type -173 410 31 1090 140 0 121 chr1 1746283 1746548 -280447116 + Tigger7 DNA MER2_type 2258 2490 -1 2308 101 0 0 chr1 1747494 1747792 -280445872 + AluSc SINE Alu 1 298 -11 854 118 0 52 chr1 1747794 1747929 -280445735 + FLAM_C SINE Alu 3 130 -3 1399 194 15 23 chr1 1747935 1748198 -280445466 + AluJo SINE Alu 38 298 -14 211 233 256 0 chr1 1748199 1748289 -280445375 - L2 LINE L2 -1 3271 3159 2480 43 7 16 chr1 1748496 1748800 -280444864 - AluY SINE Alu -10 301 1 2036 139 13 7 chr1 1748870 1749047 -280444617 - AluSx SINE Alu -2 310 129 2300 96 0 0 chr1 1749047 1749339 -280444325 - AluSg SINE Alu -16 294 3 2036 139 13 7 chr1 1749339 1749463 -280444201 - AluSx SINE Alu -183 129 7 682 180 0 43 chr1 1749463 1749594 -280444070 - FLAM_A SINE Alu -175 127 1 562 326 66 30 chr1 1749930 1750234 -280443430 + L2 LINE L2 2999 3313 0 292 332 104 26 chr1 1750849 1751117 -280442547 - L2 LINE L2 -481 2833 2545 1294 153 139 40 chr1 1751519 1751690 -280441974 - AluJo SINE Alu -11 301 92 2337 72 0 7 chr1 1751690 1751981 -280441683 + AluY SINE Alu 1 289 -22 1294 153 139 40 chr1 1751981 1752083 -280441581 - AluJo SINE Alu -220 92 1 2334 97 3 0 chr1 1752160 1752458 -280441206 - AluSp SINE Alu -14 299 1 31 0 0 0 chr1 1752625 1752656 -280441008 + AT_rich Low_complexity Low_complexity 1 31 0 1897 74 100 41 chr1 1752661 1752788 -280440876 - AluSg SINE Alu -25 285 167 2472 76 3 3 chr1 1752788 1753091 -280440573 - AluSp SINE Alu -9 304 2 1897 74 100 41 chr1 1753091 1753232 -280440432 - AluSg SINE Alu -143 167 1 483 248 177 50 chr1 1753298 1753781 -280439883 + L1MCc LINE L1 1169 1716 -4889 2386 77 0 7 chr1 1753787 1754087 -280439577 + AluSp SINE Alu 1 298 -15 1136 120 25 0 chr1 1754087 1754245 -280439419 + AluSg/x SINE Alu 134 295 -17 601 260 116 8 chr1 1754257 1754507 -280439157 + L1MCc LINE L1 1735 2011 -4930 1709 177 21 0 chr1 1754519 1754801 -280438863 + AluJb SINE Alu 1 288 -24 383 177 76 0 chr1 1754801 1754880 -280438784 + L1MCc LINE L1 2276 2360 -4581 625 287 105 53 chr1 1754927 1755338 -280438326 - MER21B LTR ERV1 -407 456 25 9005 132 62 13 chr1 1755417 1755827 -280437837 - Tigger2 DNA MER2_type -4 2714 2326 1949 119 58 3 chr1 1755827 1756122 -280437542 - AluSq SINE Alu -2 311 1 9005 132 62 13 chr1 1756122 1757360 -280436304 - Tigger2 DNA MER2_type -392 2326 984 1116 170 22 27 chr1 1757369 1757592 -280436072 + AluJo SINE Alu 10 227 -85 189 0 0 0 chr1 1757630 1757651 -280436013 + (ATTG)n Simple_repeat Simple_repeat 2 22 0 1942 127 0 0 chr1 1757651 1757935 -280435729 - AluSx SINE Alu -28 284 1 229 196 78 0 chr1 1757940 1757991 -280435673 - L1MC4 LINE L1 -891 7151 7097 501 116 0 0 chr1 1758092 1758161 -280435503 - AluS SINE Alu -223 89 21 1777 147 6 22 chr1 1758211 1758524 -280435140 + AluJb SINE Alu 3 310 -2 238 188 171 145 chr1 1760290 1760524 -280433140 + L1MC5 LINE L1 7277 7516 -445 2333 80 0 0 chr1 1761100 1761400 -280432264 - AluY SINE Alu -11 300 1 595 305 52 17 chr1 1761660 1761909 -280431755 + MIR SINE MIR 10 261 -1 1105 200 137 46 chr1 1762110 1762223 -280431441 - L1ME LINE L1 -476 5690 5589 1464 169 6 66 chr1 1762223 1762555 -280431109 + AluJo SINE Alu 1 312 0 1105 200 137 46 chr1 1762555 1762820 -280430844 - L1ME LINE L1 -577 5589 5349 1555 155 32 48 chr1 1762820 1762992 -280430672 - AluJb SINE Alu -8 304 138 1920 141 7 0 chr1 1762992 1763283 -280430381 - AluSx SINE Alu -19 293 1 1555 155 32 48 chr1 1763283 1763419 -280430245 - AluJb SINE Alu -174 138 1 1105 200 137 46 chr1 1763419 1763688 -280429976 - L1ME LINE L1 -817 5349 5106 2329 81 0 0 chr1 1763688 1763986 -280429678 - AluY SINE Alu -13 298 1 1904 117 13 23 chr1 1763986 1764293 -280429371 - AluSc SINE Alu -5 304 1 1105 200 137 46 chr1 1764293 1764350 -280429314 - L1ME LINE L1 -1059 5107 4923 2189 98 0 0 chr1 1764355 1764651 -280429013 + AluSx SINE Alu 3 298 -14 358 177 42 21 chr1 1764696 1764792 -280428872 - L1MC4 LINE L1 0 8042 7945 2360 84 0 0 chr1 1764868 1765176 -280428488 - AluY SINE Alu -3 308 1 601 236 0 16 chr1 1765408 1765531 -280428133 + FLAM_A SINE Alu 2 122 -11 1864 137 0 23 chr1 1765997 1766296 -280427368 + AluSx SINE Alu 1 292 -20 742 110 0 0 chr1 1766307 1766407 -280427257 + AluSx SINE Alu 3 102 -210 1207 141 0 5 chr1 1766487 1766679 -280426985 + AluSx SINE Alu 111 301 -11 1950 123 0 3 chr1 1766679 1766963 -280426701 + AluSg SINE Alu 1 283 -27 207 69 0 0 chr1 1766963 1766992 -280426672 + (CA)n Simple_repeat Simple_repeat 2 30 0 1959 129 0 3 chr1 1767328 1767622 -280426042 - AluSc SINE Alu -16 293 1 1821 118 36 4 chr1 1767633 1767912 -280425752 - AluSx SINE Alu -24 288 1 1343 141 48 20 chr1 1768209 1768458 -280425206 + L1MB5 LINE L1 5570 5825 -349 909 81 89 0 chr1 1768458 1768582 -280425082 + AluSq/x SINE Alu 1 135 -178 2226 86 0 16 chr1 1768582 1768886 -280424778 + AluY SINE Alu 2 300 -11 1551 163 42 54 chr1 1768902 1769233 -280424431 + L1MB5 LINE L1 5838 6164 -10 277 226 418 0 chr1 1769381 1769527 -280424137 - MER20 DNA MER1_type -7 212 6 1578 169 0 24 chr1 1769663 1769959 -280423705 - AluJo SINE Alu -23 289 1 1693 114 23 75 chr1 1770228 1770346 -280423318 + AluSx SINE Alu 14 137 -175 2390 77 0 0 chr1 1770346 1770657 -280423007 + AluY SINE Alu 1 311 0 1693 114 23 75 chr1 1770657 1770844 -280422820 + AluSx SINE Alu 137 303 -9 2373 52 0 0 chr1 1771724 1772048 -280421616 + AluY SINE Alu 1 324 0 1111 241 130 26 chr1 1772067 1772254 -280421410 + L1MC4 LINE L1 6430 6596 -1289 438 20 0 0 chr1 1772254 1772305 -280421359 + (CA)n Simple_repeat Simple_repeat 1 51 0 1111 241 130 26 chr1 1772305 1772714 -280420950 + L1MC4 LINE L1 6596 7151 -734 1948 123 0 0 chr1 1772717 1773001 -280420663 + AluSx SINE Alu 1 284 -28 189 0 0 0 chr1 1773001 1773022 -280420642 + (CAAT)n Simple_repeat Simple_repeat 2 22 0 1048 170 22 27 chr1 1773060 1773283 -280420381 - AluJo SINE Alu -81 231 10 9557 131 62 13 chr1 1773292 1774530 -280419134 + Tigger2 DNA MER2_type 984 2326 -392 1809 119 58 3 chr1 1774530 1774825 -280418839 + AluSq SINE Alu 1 311 -2 9557 131 62 13 chr1 1774825 1775235 -280418429 + Tigger2 DNA MER2_type 2326 2714 -4 725 273 114 63 chr1 1775314 1775725 -280417939 + MER21B LTR ERV1 25 456 -407 398 177 76 0 chr1 1775772 1775851 -280417813 - L1MCc LINE L1 -4581 2360 2276 1569 177 21 0 chr1 1775851 1776133 -280417531 - AluJb SINE Alu -24 288 1 649 260 116 8 chr1 1776145 1776395 -280417269 - L1MCc LINE L1 -4930 2011 1735 1055 120 25 0 chr1 1776407 1776565 -280417099 - AluSg/x SINE Alu -17 293 132 2242 77 0 7 chr1 1776565 1776865 -280416799 - AluSp SINE Alu -15 298 1 539 242 175 48 chr1 1776871 1777354 -280416310 - L1MCc LINE L1 -4889 1534 1169 1171 57 0 0 chr1 1777420 1777561 -280416103 + AluSg1 SINE Alu 1 141 -168 1988 92 7 17 chr1 1777561 1777854 -280415810 + AluSp SINE Alu 2 291 -22 1016 148 0 0 chr1 1777968 1778123 -280415541 - FRAM SINE Alu -26 150 1 2032 120 0 3 chr1 1778135 1778427 -280415237 - AluSx SINE Alu -21 291 1 1166 170 74 48 chr1 1778457 1778727 -280414937 + AluJo SINE Alu 1 277 -35 2180 53 42 3 chr1 1778760 1779043 -280414621 + AluY SINE Alu 1 294 -17 2226 96 0 3 chr1 1779269 1779570 -280414094 + AluSq SINE Alu 1 300 -13 2045 123 7 0 chr1 1779953 1780255 -280413409 + AluSq SINE Alu 1 304 -9 309 51 0 0 chr1 1780394 1780433 -280413231 + (TG)n Simple_repeat Simple_repeat 2 40 0 550 208 57 0 chr1 1780435 1780541 -280413123 - FLAM_C SINE Alu -30 113 2 2149 102 0 0 chr1 1780976 1781269 -280412395 - AluSp SINE Alu -20 293 1 2166 120 0 0 chr1 1782873 1783173 -280410491 - AluSx SINE Alu -12 300 1 22 35 0 0 chr1 1783310 1783339 -280410325 + AT_rich Low_complexity Low_complexity 1 29 0 2249 71 0 3 chr1 1783424 1783721 -280409943 - AluY SINE Alu -11 300 5 1825 132 14 7 chr1 1784433 1784729 -280408935 + AluSx SINE Alu 1 298 -14 624 100 100 20 chr1 1784857 1784957 -280408707 - AluSg/x SINE Alu -22 288 181 823 178 92 12 chr1 1785289 1785452 -280408212 + AluJb SINE Alu 136 311 -1 2387 65 7 0 chr1 1786040 1786347 -280407317 - AluY SINE Alu -2 309 1 2090 59 3 56 chr1 1786686 1787010 -280406654 + AluY SINE Alu 1 307 -4 647 241 0 0 chr1 1787017 1787150 -280406514 + FLAM_C SINE Alu 1 133 0 308 159 55 131 chr1 1787150 1787187 -280406477 - Charlie5 DNA MER1_type -81 2543 2505 1312 162 170 4 chr1 1787187 1787446 -280406218 - AluJb SINE Alu 0 302 1 308 159 55 131 chr1 1787446 1787553 -280406111 - Charlie5 DNA MER1_type -119 2505 2410 2091 124 0 3 chr1 1788921 1789227 -280404437 - AluSx SINE Alu -7 305 1 1637 172 0 25 chr1 1789459 1789779 -280403885 + AluJb SINE Alu 1 312 0 2002 102 7 10 chr1 1789781 1790076 -280403588 + AluSx SINE Alu 1 294 -18 2318 93 0 0 chr1 1790409 1790721 -280402943 - AluSx SINE Alu 0 312 1 872 102 31 0 chr1 1790738 1790866 -280402798 - AluJo SINE Alu -176 136 5 216 0 0 0 chr1 1790972 1790996 -280402668 + (T)n Simple_repeat Simple_repeat 1 24 0 2372 226 46 20 chr1 1791789 1792373 -280401291 + L1MB5 LINE L1 5576 6174 0 2124 80 4 0 chr1 1792382 1792658 -280401006 + AluSx SINE Alu 28 304 -8 262 199 117 0 chr1 1793830 1793904 -280399760 + MIR SINE MIR 45 128 -80 2236 90 3 3 chr1 1794161 1794472 -280399192 - AluY SINE Alu 0 311 1 1555 173 20 10 chr1 1794475 1794776 -280398888 - AluJo SINE Alu 0 312 9 1084 210 110 3 chr1 1795188 1795479 -280398185 + L1MA7 LINE L1 5958 6279 -12 1457 193 0 27 chr1 1795512 1795808 -280397856 + AluJo SINE Alu 3 290 -22 25 31 0 0 chr1 1795853 1795885 -280397779 + AT_rich Low_complexity Low_complexity 1 32 0 1408 126 165 11 chr1 1795890 1796151 -280397513 + AluSx SINE Alu 1 301 -11 282 56 0 0 chr1 1796871 1796907 -280396757 + (TG)n Simple_repeat Simple_repeat 2 37 0 1171 75 43 0 chr1 1796948 1797109 -280396555 - L1PA6 LINE L1 -1 6153 5986 2381 56 0 13 chr1 1797214 1797517 -280396147 - AluY SINE Alu -12 299 1 2182 83 7 7 chr1 1797588 1797888 -280395776 - AluY SINE Alu -11 300 1 2115 121 0 7 chr1 1798392 1798697 -280394967 + AluSx SINE Alu 1 303 -9 186 43 0 0 chr1 1798697 1798720 -280394944 + (TA)n Simple_repeat Simple_repeat 1 23 0 324 175 0 0 chr1 1798734 1798791 -280394873 + Alu SINE Alu 240 296 -4 2138 125 0 0 chr1 1798812 1799117 -280394547 + AluSx SINE Alu 1 305 -7 1680 142 0 86 chr1 1799221 1799415 -280394249 - AluJo SINE Alu -7 305 149 2068 76 40 0 chr1 1799415 1799691 -280393973 + AluY SINE Alu 1 287 -24 1680 142 0 86 chr1 1799691 1799821 -280393843 - AluJo SINE Alu -163 149 9 190 310 28 42 chr1 1800115 1800186 -280393478 + L3b LINE CR1 1479 1548 -35 1445 119 169 4 chr1 1800329 1800590 -280393074 + AluSx SINE Alu 1 304 -8 2033 112 0 0 chr1 1800841 1801151 -280392513 + AluSx SINE Alu 6 315 0 2018 105 14 7 chr1 1801474 1801769 -280391895 + AluSp SINE Alu 1 297 -16 2356 71 0 7 chr1 1801771 1802081 -280391583 + AluY SINE Alu 1 308 -3 1740 136 20 33 chr1 1802286 1802587 -280391077 - AluSg SINE Alu 0 310 14 2056 141 0 0 chr1 1802783 1803088 -280390576 - AluSx SINE Alu -7 305 1 2213 92 0 3 chr1 1803938 1804232 -280389432 + AluSq SINE Alu 1 293 -20 1984 110 3 10 chr1 1804303 1804603 -280389061 - AluSq SINE Alu -15 298 1 2156 101 0 7 chr1 1804605 1804902 -280388762 - AluSx SINE Alu -17 295 1 24 0 0 0 chr1 1805449 1805473 -280388191 + AT_rich Low_complexity Low_complexity 1 24 0 2246 64 0 20 chr1 1805473 1805768 -280387896 - AluY SINE Alu -22 289 1 2160 123 0 0 chr1 1805768 1806078 -280387586 - AluSg SINE Alu 0 310 1 1236 193 64 0 chr1 1806199 1806463 -280387201 + AluJo SINE Alu 2 282 -30 417 91 0 0 chr1 1806791 1806846 -280386818 - Alu SINE Alu -253 56 2 2156 101 0 7 chr1 1806849 1807146 -280386518 - AluSx SINE Alu -17 295 1 24 0 0 0 chr1 1807693 1807717 -280385947 + AT_rich Low_complexity Low_complexity 1 24 0 2265 67 0 20 chr1 1807714 1808012 -280385652 - AluY SINE Alu -19 292 1 2272 107 0 3 chr1 1808012 1808322 -280385342 - AluSc SINE Alu 0 309 1 1903 95 64 18 chr1 1808818 1809101 -280384563 + AluSx SINE Alu 1 296 -16 1002 201 14 14 chr1 1809320 1809539 -280384125 + MER47A DNA MER2_type 28 246 -120 191 318 103 40 chr1 1809693 1809819 -280383845 + MIR SINE MIR 13 146 -116 266 248 107 58 chr1 1810509 1810630 -280383034 + L1MC/D LINE L1 5683 5809 -1999 2029 119 7 0 chr1 1810776 1811071 -280382593 - AluSx SINE Alu -15 297 1 1266 143 10 0 chr1 1812046 1812249 -280381415 - AluSq SINE Alu -22 291 87 2387 44 7 3 chr1 1812258 1812554 -280381110 - AluY SINE Alu -14 297 1 1267 282 108 50 chr1 1812940 1814100 -280379564 + L1ME LINE L1 47 1269 -4811 584 302 71 88 chr1 1814117 1814368 -280379296 + L1ME LINE L1 1401 1655 -4425 2005 122 10 7 chr1 1814368 1814662 -280379002 - AluSx SINE Alu -17 295 1 584 302 71 88 chr1 1814662 1815209 -280378455 + L1ME LINE L1 1655 2186 -3894 1150 242 129 27 chr1 1815237 1815820 -280377844 + L1ME LINE L1 2253 2894 -3186 1541 103 23 0 chr1 1815820 1816034 -280377630 + AluSx SINE Alu 1 219 -93 411 200 61 17 chr1 1816247 1816362 -280377302 - L1ME LINE L1 -4700 1561 1442 1272 281 108 51 chr1 1816379 1817540 -280376124 - L1ME LINE L1 -4811 1269 47 2083 87 10 13 chr1 1817926 1818225 -280375439 + AluSx SINE Alu 1 298 -14 1266 143 10 0 chr1 1818234 1818437 -280375227 + AluSq SINE Alu 87 291 -22 2029 119 7 0 chr1 1819412 1819707 -280373957 + AluSx SINE Alu 1 297 -15 266 248 107 58 chr1 1819853 1819974 -280373690 - L1MC/D LINE L1 -1999 5809 5683 191 318 103 40 chr1 1820664 1820790 -280372874 - MIR SINE MIR -116 146 13 1002 201 14 14 chr1 1820944 1821163 -280372501 - MER47A DNA MER2_type -120 246 28 1903 95 64 18 chr1 1821382 1821665 -280371999 - AluSx SINE Alu -16 296 1 2196 92 3 0 chr1 1822161 1822445 -280371219 + AluSc SINE Alu 1 285 -24 767 92 64 0 chr1 1822822 1822931 -280370733 - AluSq SINE Alu -101 212 97 2056 122 7 0 chr1 1824071 1824365 -280369299 - AluSq SINE Alu -17 296 1 2064 121 0 7 chr1 1824427 1824733 -280368931 - AluSc SINE Alu -5 304 1 2474 50 0 10 chr1 1825674 1825976 -280367688 + AluSp SINE Alu 1 299 -14 2220 86 3 10 chr1 1827437 1827738 -280365926 - AluSp SINE Alu -14 299 1 2025 127 3 0 chr1 1829096 1829396 -280364268 - AluSg SINE Alu -6 304 4 204 139 28 0 chr1 1831376 1831412 -280362252 + GA-rich Low_complexity Low_complexity 5 41 0 1186 98 11 6 chr1 1832409 1832583 -280361081 + AluY SINE Alu 122 296 -15 1160 124 0 0 chr1 1832620 1832789 -280360875 - AluSg/x SINE Alu -10 302 134 2261 79 7 7 chr1 1832789 1833093 -280360571 - AluSq SINE Alu -9 304 1 2122 82 14 0 chr1 1833108 1833401 -280360263 - AluY SINE Alu -14 297 1 23 0 0 0 chr1 1833879 1833902 -280359762 + AT_rich Low_complexity Low_complexity 1 23 0 389 219 42 0 chr1 1834995 1835091 -280358573 + MIR SINE MIR 60 159 -103 1998 103 11 4 chr1 1835098 1835379 -280358285 + AluSx SINE Alu 1 283 -29 201 292 14 0 chr1 1835445 1835517 -280358147 + L2 LINE L2 2892 2964 -349 213 240 135 21 chr1 1835583 1835679 -280357985 + L2 LINE L2 3167 3273 -40 259 209 121 0 chr1 1836108 1836199 -280357465 - MER69 DNA AcHobo -3 2523 2422 1297 181 59 28 chr1 1837354 1837456 -280356208 + AluJb SINE Alu 1 98 -214 225 0 0 0 chr1 1837456 1837481 -280356183 + (CA)n Simple_repeat Simple_repeat 2 26 0 1297 181 59 28 chr1 1837481 1837666 -280355998 + AluJb SINE Alu 98 297 -15 232 274 8 43 chr1 1838473 1838590 -280355074 + C-rich Low_complexity Low_complexity 6 118 0 233 217 28 38 chr1 1838705 1838811 -280354853 + (CGG)n Simple_repeat Simple_repeat 1 105 0 1469 204 0 4 chr1 1840068 1840343 -280353321 - AluJo SINE Alu -27 285 12 2302 78 3 0 chr1 1840352 1840647 -280353017 - AluSg SINE Alu -6 304 9 329 269 10 39 chr1 1841868 1841972 -280351692 - L1M LINE L1 -2443 5365 5265 2117 97 0 10 chr1 1842024 1842323 -280351341 - AluSg SINE Alu -14 296 1 307 119 25 4 chr1 1842459 1842528 -280351136 + Alu SINE Alu 1 53 -250 313 77 19 0 chr1 1842535 1842587 -280351077 + Alu SINE Alu 1 53 -249 2009 81 6 78 chr1 1842595 1842915 -280350749 + AluSp SINE Alu 1 297 -16 228 208 38 0 chr1 1842945 1842998 -280350666 + L1MC4 LINE L1 6649 6703 -1339 30 0 0 0 chr1 1843028 1843058 -280350606 + AT_rich Low_complexity Low_complexity 1 30 0 1438 204 48 0 chr1 1843114 1843383 -280350281 + AluJo SINE Alu 1 282 -30 486 0 0 0 chr1 1843418 1843472 -280350192 + (CA)n Simple_repeat Simple_repeat 1 54 0 811 153 0 0 chr1 1843556 1843680 -280349984 - FLAM_C SINE Alu -19 124 1 648 135 69 129 chr1 1843683 1843708 -280349956 - L1MD3 LINE L1 -7 7988 7963 2190 100 0 3 chr1 1843708 1844008 -280349656 + AluSq SINE Alu 1 299 -14 648 135 69 129 chr1 1844008 1844088 -280349576 - L1MD3 LINE L1 -32 7963 7880 2334 76 0 3 chr1 1844088 1844391 -280349273 - AluSp SINE Alu -11 302 1 648 135 69 129 chr1 1844391 1844570 -280349094 - L1MD3 LINE L1 -115 7880 6069 660 102 0 0 chr1 1844570 1844658 -280349006 - AluJ/FLAM SINE Alu -224 88 1 1694 191 3 3 chr1 1844685 1844988 -280348676 + AluJb SINE Alu 1 303 -9 2282 221 56 121 chr1 1845024 1845040 -280348624 - L1M4 LINE L1 -1078 5068 5053 1906 147 3 7 chr1 1845040 1845346 -280348318 + AluJb SINE Alu 1 305 -7 2282 221 56 121 chr1 1845346 1846092 -280347572 - L1M4 LINE L1 -1093 5053 4260 1842 128 38 7 chr1 1846092 1846382 -280347282 - AluSq SINE Alu -14 299 1 1690 84 0 0 chr1 1846390 1846629 -280347035 - AluY SINE Alu 0 308 70 2282 221 56 121 chr1 1846629 1846925 -280346739 - L1M4 LINE L1 -1893 4253 4068 1074 141 5 40 chr1 1846945 1847144 -280346520 - AluSg/x SINE Alu 0 310 119 315 0 0 0 chr1 1847144 1847179 -280346485 + (TTTTTG)n Simple_repeat Simple_repeat 3 37 0 1114 143 6 6 chr1 1847179 1847354 -280346310 - AluSx SINE Alu -137 175 1 2020 139 10 0 chr1 1847391 1847570 -280346094 - AluSx SINE Alu 0 312 127 2159 102 0 13 chr1 1847570 1847884 -280345780 - AluSx SINE Alu -2 310 1 2020 139 10 0 chr1 1847884 1848013 -280345651 - AluSx SINE Alu -185 127 1 500 296 31 6 chr1 1848060 1848222 -280345442 - MER5B DNA MER1_type -9 169 4 849 231 44 108 chr1 1848331 1848582 -280345082 - MLT1B LTR MaLR 0 626 361 1367 180 19 64 chr1 1848582 1848893 -280344771 - AluJo SINE Alu -15 297 1 849 231 44 108 chr1 1848893 1848954 -280344710 - MLT1B LTR MaLR -265 361 298 2236 93 7 0 chr1 1848954 1849254 -280344410 - AluSq SINE Alu -7 306 5 849 231 44 108 chr1 1849254 1849334 -280344330 - MLT1B LTR MaLR -328 298 20 851 167 0 0 chr1 1849336 1849468 -280344196 + FLAM_C SINE Alu 2 133 0 2110 111 0 7 chr1 1849932 1850229 -280343435 + AluSx SINE Alu 1 295 -17 1086 168 0 25 chr1 1850239 1850436 -280343228 + AluJo SINE Alu 1 192 -120 189 171 0 0 chr1 1850445 1850480 -280343184 + A-rich Low_complexity Low_complexity 1 35 0 1928 76 4 19 chr1 1850708 1850971 -280342693 - AluSp SINE Alu 0 313 55 821 154 56 7 chr1 1851019 1851162 -280342502 - AluJb SINE Alu -161 151 2 1925 116 25 18 chr1 1851234 1851519 -280342145 - AluSq SINE Alu -26 287 1 29 47 0 0 chr1 1851658 1851701 -280341963 + AT_rich Low_complexity Low_complexity 1 43 0 2173 90 3 0 chr1 1852240 1852529 -280341135 - AluSx SINE Alu -22 290 1 2365 90 0 0 chr1 1853502 1853812 -280339852 - AluSx SINE Alu -2 310 1 1042 60 8 8 chr1 1853812 1853946 -280339718 - AluY SINE Alu -177 134 1 321 26 0 0 chr1 1854351 1854389 -280339275 + (TTCA)n Simple_repeat Simple_repeat 3 40 0 1889 136 0 3 chr1 1854389 1854675 -280338989 - AluSq SINE Alu -28 285 1 1522 181 14 10 chr1 1855723 1855858 -280337806 + AluJb SINE Alu 1 134 -178 2106 105 0 3 chr1 1855858 1856153 -280337511 + AluSg1 SINE Alu 1 294 -15 1522 181 14 10 chr1 1856153 1856309 -280337355 + AluJb SINE Alu 134 293 -19 410 264 86 0 chr1 1860121 1860261 -280333403 - MSTD LTR MaLR 0 396 245 324 296 50 0 chr1 1860298 1860440 -280333224 - MSTC LTR MaLR -243 153 6 2304 75 3 3 chr1 1862030 1862325 -280331339 + AluSc SINE Alu 1 295 -14 252 0 0 0 chr1 1864212 1864240 -280329424 + (GGA)n Simple_repeat Simple_repeat 2 29 0 203 188 21 0 chr1 1867478 1867526 -280326138 + (CA)n Simple_repeat Simple_repeat 2 50 0 218 132 19 0 chr1 1867564 1867617 -280326047 + (CA)n Simple_repeat Simple_repeat 1 54 0 358 314 128 16 chr1 1868565 1868753 -280324911 + L1ME LINE L1 5265 5473 -648 554 216 204 55 chr1 1868757 1869012 -280324652 + AluJo SINE Alu 5 297 -5 2229 84 0 7 chr1 1869060 1869356 -280324308 + AluY SINE Alu 1 294 -17 2126 105 0 10 chr1 1869356 1869651 -280324013 + AluSg SINE Alu 1 292 -18 2201 77 10 16 chr1 1869879 1870189 -280323475 - AluSg SINE Alu -2 308 1 26 0 0 0 chr1 1870424 1870450 -280323214 + GC_rich Low_complexity Low_complexity 1 26 0 180 0 0 0 chr1 1870953 1870973 -280322691 + (A)n Simple_repeat Simple_repeat 1 20 0 200 136 0 68 chr1 1871704 1871763 -280321901 + (CAAAA)n Simple_repeat Simple_repeat 2 56 0 862 270 79 41 chr1 1872515 1872934 -280320730 + MLT1F1 LTR MaLR 125 559 -8 718 126 0 0 chr1 1872986 1873089 -280320575 + AluSp/q SINE Alu 193 295 -18 503 219 164 0 chr1 1873090 1873111 -280320553 - L1M4 LINE L1 -786 5360 5344 2261 92 13 0 chr1 1873111 1873417 -280320247 - AluSx SINE Alu -2 310 1 503 219 164 0 chr1 1873417 1873541 -280320123 - L1M4 LINE L1 -802 5344 5191 216 158 0 0 chr1 1873545 1873583 -280320081 + (TATATG)n Simple_repeat Simple_repeat 3 40 0 2134 110 3 0 chr1 1873583 1873874 -280319790 - AluSp SINE Alu -9 304 13 2172 122 0 0 chr1 1873883 1874177 -280319487 - AluSx SINE Alu -18 294 1 185 277 0 0 chr1 1874370 1874417 -280319247 + MIR SINE MIR 40 86 -176 1873 133 34 0 chr1 1874695 1874988 -280318676 - AluSx SINE Alu -9 303 1 2269 82 0 22 chr1 1875000 1875317 -280318347 - AluY SINE Alu -1 310 1 2001 118 17 0 chr1 1875594 1875882 -280317782 - AluSg SINE Alu -17 293 1 186 43 0 0 chr1 1875887 1875910 -280317754 + (TTTTTA)n Simple_repeat Simple_repeat 2 24 0 288 272 22 11 chr1 1875934 1876026 -280317638 - L1MC4a LINE L1 -1280 6528 6436 1151 103 23 23 chr1 1876050 1876066 -280317598 + AluSg/x SINE Alu 121 136 -176 2033 118 10 3 chr1 1876066 1876371 -280317293 + AluSp SINE Alu 1 307 -6 1151 103 23 23 chr1 1876371 1876528 -280317136 + AluSg/x SINE Alu 135 294 -18 2193 85 0 3 chr1 1876528 1876823 -280316841 + AluY SINE Alu 1 294 -17 2247 103 0 0 chr1 1877043 1877345 -280316319 - AluSx SINE Alu -10 302 1 1254 149 0 0 chr1 1879646 1879841 -280313823 - AluJb SINE Alu 0 312 118 2069 121 6 6 chr1 1880317 1880630 -280313034 - AluSq SINE Alu 0 313 1 2327 79 0 3 chr1 1880630 1880933 -280312731 - AluY SINE Alu -9 302 1 2123 113 0 0 chr1 1880934 1881225 -280312439 - AluSg SINE Alu -19 291 1 868 157 0 7 chr1 1881378 1881525 -280312139 - AluJo SINE Alu -166 146 1 304 323 8 40 chr1 1881634 1881758 -280311906 + L1ME LINE L1 6 125 -5945 1324 136 5 0 chr1 1881806 1882004 -280311660 - AluSq SINE Alu -35 278 80 301 125 54 11 chr1 1882012 1882102 -280311562 - L1P5 LINE L1 -710 5441 5346 2129 125 3 0 chr1 1882634 1882945 -280310719 + AluSq SINE Alu 1 312 -1 494 312 24 0 chr1 1883081 1883251 -280310413 + MER3 DNA MER1_type 22 195 -14 2397 64 0 10 chr1 1883339 1883651 -280310013 - AluY SINE Alu -2 309 1 2143 101 0 3 chr1 1883657 1883953 -280309711 - AluSx SINE Alu -17 295 1 1613 147 8 4 chr1 1883993 1884258 -280309406 + AluSx SINE Alu 42 307 -5 1631 159 3 75 chr1 1884892 1885212 -280308452 - AluSx SINE Alu -15 297 1 2244 96 3 0 chr1 1885215 1885518 -280308146 - AluSx SINE Alu 0 312 9 2080 120 0 13 chr1 1885745 1886053 -280307611 - AluY SINE Alu -7 304 1 234 119 24 0 chr1 1886053 1886095 -280307569 - Alu SINE Alu -257 44 2 * 300 127 16 16 chr1 1886095 1886140 -280307524 - AluJ/FLAM SINE Alu -257 45 1 229 183 33 0 chr1 1886154 1886214 -280307450 - AluJ/FLAM SINE Alu -240 62 1 1483 170 50 14 chr1 1887045 1887327 -280306337 - AluJo SINE Alu -17 295 4 2072 125 0 0 chr1 1887470 1887759 -280305905 + AluSg SINE Alu 1 289 -21 311 284 50 14 chr1 1889869 1890010 -280303654 - MER65B LTR ERV1 -385 146 1 2007 132 10 0 chr1 1890035 1890330 -280303334 + AluSx SINE Alu 1 298 -14 1894 133 0 7 chr1 1890330 1890616 -280303048 + AluY SINE Alu 6 289 -22 1764 84 54 64 chr1 1890617 1890915 -280302749 + AluY SINE Alu 1 295 -16 2278 67 0 26 chr1 1890916 1891228 -280302436 + AluY SINE Alu 1 304 -7 2134 74 0 65 chr1 1891285 1891610 -280302054 + AluY SINE Alu 1 304 -7 2133 117 10 0 chr1 1891990 1892299 -280301365 + AluSx SINE Alu 1 312 0 357 332 109 10 chr1 1893273 1893475 -280300189 - MIR SINE MIR -21 241 20 658 164 94 0 chr1 1893478 1893606 -280300058 - FAM SINE Alu -45 140 1 1736 98 55 4 chr1 1893630 1893884 -280299780 - AluSg SINE Alu 0 310 44 1677 171 7 20 chr1 1893894 1894198 -280299466 - AluJb SINE Alu -11 301 2 519 147 198 0 chr1 1894907 1895023 -280298641 + Tigger1 DNA MER2_type 1 139 -2279 286 70 0 0 chr1 1895027 1895070 -280298594 - AluY SINE Alu -5 303 261 1516 110 0 5 chr1 1895071 1895280 -280298384 - AluY SINE Alu -103 208 1 213 309 12 48 chr1 1895434 1895518 -280298146 - L2 LINE L2 -2760 554 474 1218 131 159 36 chr1 1895938 1896190 -280297474 - AluY SINE Alu -17 294 12 1219 168 0 0 chr1 1896256 1896452 -280297212 + AluSg/x SINE Alu 100 295 -17 2141 102 0 17 chr1 1896454 1896748 -280296916 + AluSg SINE Alu 3 291 -19 2149 76 0 17 chr1 1896752 1897080 -280296584 + AluY SINE Alu 1 323 0 2287 80 3 3 chr1 1897234 1897535 -280296129 + AluY SINE Alu 1 301 -10 2396 60 0 7 chr1 1898213 1898513 -280295151 + AluY SINE Alu 1 298 -13 905 126 0 15 chr1 1900093 1900228 -280293436 + AluJo SINE Alu 1 133 -169 2459 70 0 3 chr1 1900304 1900617 -280293047 - AluSx SINE Alu 0 312 1 856 194 26 0 chr1 1901060 1901215 -280292449 + AluJo SINE Alu 137 295 -7 317 181 169 0 chr1 1901875 1901958 -280291706 + FLAM_A SINE Alu 33 129 -4 296 261 70 14 chr1 1902648 1902790 -280290874 + L1M4b LINE L1 779 928 -5356 * 1434 281 108 9 chr1 1902787 1903513 -280290151 + L1M4b LINE L1 1140 2035 -4347 302 286 181 4 chr1 1903593 1903852 -280289812 + L1M4b LINE L1 2173 2515 -3905 344 285 47 17 chr1 1903924 1903942 -280289722 + L1M4b LINE L1 2603 2619 -3763 1578 137 0 0 chr1 1903942 1904176 -280289488 + AluSg/x SINE Alu 78 311 -1 344 285 47 17 chr1 1904176 1904329 -280289335 + L1M4b LINE L1 2619 2779 -3603 2152 92 0 13 chr1 1904333 1904647 -280289017 + AluSg SINE Alu 1 310 0 2012 117 0 10 chr1 1905002 1905302 -280288362 - AluY SINE Alu -14 297 1 1065 189 4 25 chr1 1905302 1905546 -280288118 - L1M4c LINE L1 -4542 1842 1604 1409 152 28 24 chr1 1905547 1905797 -280287867 - AluJo SINE Alu -12 300 50 4167 199 130 29 chr1 1905798 1907246 -280286418 - L1M4c LINE L1 -4774 1610 17 448 141 10 10 chr1 1908216 1908315 -280285349 + GA-rich Low_complexity Low_complexity 2 100 0 2346 86 0 0 chr1 1908488 1908790 -280284874 - AluSx SINE Alu -10 302 1 1746 148 7 30 chr1 1910591 1910776 -280282888 - AluJo SINE Alu -21 291 114 2295 77 3 10 chr1 1910776 1911076 -280282588 + AluSg SINE Alu 1 298 -12 1746 148 7 30 chr1 1911076 1911188 -280282476 - AluJo SINE Alu -198 114 1 35 24 0 0 chr1 1916825 1916867 -280276797 + GC_rich Low_complexity Low_complexity 1 42 0 27 29 0 0 chr1 1917029 1917063 -280276601 + GC_rich Low_complexity Low_complexity 1 34 0 376 224 24 8 chr1 1920101 1920226 -280273438 + (CA)n Simple_repeat Simple_repeat 2 128 0 236 127 18 0 chr1 1920266 1920321 -280273343 + (CA)n Simple_repeat Simple_repeat 1 56 0 346 325 101 34 chr1 1920698 1920984 -280272680 + L1ME LINE L1 757 5407 -648 357 146 0 0 chr1 1920988 1921060 -280272604 + AluJ/FLAM SINE Alu 5 59 -243 547 172 82 16 chr1 1921121 1921243 -280272421 + FLAM_A SINE Alu 1 130 -3 2229 84 0 7 chr1 1921291 1921587 -280272077 + AluY SINE Alu 1 294 -17 2145 99 0 10 chr1 1921587 1921880 -280271784 + AluSg SINE Alu 1 290 -20 2278 87 6 13 chr1 1922113 1922424 -280271240 - AluSc SINE Alu 0 309 1 1015 166 6 6 chr1 1922441 1922604 -280271060 - FRAM SINE Alu 0 166 4 1875 114 0 28 chr1 1922832 1923145 -280270519 - AluSx SINE Alu 0 305 1 2151 80 3 17 chr1 1923153 1923455 -280270209 - AluSg SINE Alu -12 298 1 26 0 0 0 chr1 1923690 1923716 -280269948 + GC_rich Low_complexity Low_complexity 1 26 0 200 136 0 68 chr1 1924979 1925038 -280268626 + (CAAAA)n Simple_repeat Simple_repeat 2 56 0 851 272 79 41 chr1 1925790 1926209 -280267455 + MLT1F1 LTR MaLR 125 559 -8 718 126 0 0 chr1 1926261 1926364 -280267300 + AluSp/q SINE Alu 193 295 -18 2239 95 13 0 chr1 1926386 1926692 -280266972 - AluSx SINE Alu -2 310 1 280 232 50 144 chr1 1926694 1926840 -280266824 - L1M4 LINE L1 -822 5324 5166 2131 108 7 0 chr1 1926840 1927137 -280266527 - AluSp SINE Alu -2 311 13 2251 107 0 0 chr1 1927146 1927444 -280266220 - AluSx SINE Alu -14 298 1 280 232 50 144 chr1 1927444 1927627 -280266037 - L1M4 LINE L1 -988 5158 5017 257 337 232 6 chr1 1927637 1927818 -280265846 + MIR SINE MIR 40 261 -1 2022 118 7 3 chr1 1927962 1928259 -280265405 - AluY SINE Alu -13 298 1 280 269 57 80 chr1 1928462 1928533 -280265131 - L1MC4a LINE L1 -571 7237 7166 1920 132 17 0 chr1 1928533 1928821 -280264843 - AluSg SINE Alu -17 293 1 280 269 57 80 chr1 1928821 1928924 -280264740 - L1MC4a LINE L1 -642 7166 7067 1946 146 10 0 chr1 1929033 1929154 -280264510 + AluSx SINE Alu 9 127 -185 2191 102 0 13 chr1 1929154 1929468 -280264196 + AluSx SINE Alu 1 310 -2 1946 146 10 0 chr1 1929468 1929647 -280264017 + AluSx SINE Alu 127 312 0 1135 143 6 6 chr1 1929684 1929859 -280263805 + AluSx SINE Alu 1 175 -137 315 0 0 0 chr1 1929859 1929894 -280263770 + (CAAAAA)n Simple_repeat Simple_repeat 3 37 0 1088 141 5 40 chr1 1929894 1930093 -280263571 + AluSg/x SINE Alu 121 312 0 2077 230 56 112 chr1 1930113 1930409 -280263255 + L1M4 LINE L1 4068 4379 -1767 1708 84 0 0 chr1 1930409 1930648 -280263016 + AluY SINE Alu 70 308 0 1867 128 38 7 chr1 1930656 1930946 -280262718 + AluSq SINE Alu 1 299 -14 2077 230 56 112 chr1 1930946 1931692 -280261972 + L1M4 LINE L1 4386 5172 -974 1939 147 3 7 chr1 1931692 1931998 -280261666 - AluJb SINE Alu -7 305 1 2077 230 56 112 chr1 1931998 1932050 -280261614 + L1M4 LINE L1 5172 5107 -1039 1735 191 3 3 chr1 1932050 1932353 -280261311 - AluJb SINE Alu -9 303 1 2077 230 56 112 chr1 1932353 1932377 -280261287 + L1M4 LINE L1 5106 5130 -1016 666 102 0 0 chr1 1932380 1932468 -280261196 + AluJ/FLAM SINE Alu 1 88 -224 532 145 81 128 chr1 1932468 1932647 -280261017 + L1MD3 LINE L1 6069 6255 -1711 2356 76 0 3 chr1 1932647 1932950 -280260714 + AluSp SINE Alu 1 302 -11 532 145 81 128 chr1 1932950 1933030 -280260634 + L1MD3 LINE L1 6255 6337 -1629 2232 97 0 3 chr1 1933030 1933330 -280260334 - AluSq SINE Alu -14 299 1 532 145 81 128 chr1 1933330 1933366 -280260298 + L1MD3 LINE L1 6337 7959 -7 2089 121 0 7 chr1 1933392 1933698 -280259966 - AluSc SINE Alu -5 304 1 2491 50 0 10 chr1 1934639 1934941 -280258723 + AluSp SINE Alu 1 299 -14 2244 86 3 10 chr1 1936402 1936703 -280256961 - AluSp SINE Alu -14 299 1 2054 127 3 0 chr1 1938061 1938361 -280255303 - AluSg SINE Alu -6 304 4 204 139 28 0 chr1 1940341 1940377 -280253287 + GA-rich Low_complexity Low_complexity 5 41 0 1100 105 12 6 chr1 1941374 1941536 -280252128 + AluY SINE Alu 122 284 -27 1283 156 4 39 chr1 2041548 2041779 -280151885 - AluSx SINE Alu -87 225 3 1925 50 0 114 chr1 2042399 2042698 -280150966 - AluY SINE Alu -46 265 1 195 42 0 0 chr1 2043346 2043370 -280150294 + (CGTG)n Simple_repeat Simple_repeat 4 27 0 1952 104 0 38 chr1 2043897 2044186 -280149478 - AluSx SINE Alu -34 278 1 2071 120 0 23 chr1 2044197 2044505 -280149159 - AluSg1 SINE Alu -8 301 1 2237 98 3 0 chr1 2046375 2046672 -280146992 + AluSg SINE Alu 1 298 -12 216 292 104 42 chr1 2046792 2046888 -280146776 + MIR SINE MIR 156 257 -5 647 221 8 0 chr1 2046920 2047051 -280146613 - FLAM_C SINE Alu 0 133 2 945 201 183 0 chr1 2047330 2047559 -280146105 + AluJo SINE Alu 18 288 -24 1522 176 19 4 chr1 2047605 2047733 -280145931 + AluSq SINE Alu 1 126 -187 1917 128 17 3 chr1 2047733 2048030 -280145634 + AluSp SINE Alu 2 302 -11 1522 176 19 4 chr1 2048030 2048163 -280145501 + AluSq SINE Alu 126 266 -47 352 272 24 16 chr1 2048292 2048417 -280145247 - L1MB8 LINE L1 -12 6166 6041 690 238 18 24 chr1 2049368 2049536 -280144128 - AluJb SINE Alu -9 303 137 2011 103 34 0 chr1 2049536 2049828 -280143836 - AluSx SINE Alu -10 302 1 1886 142 0 14 chr1 2049950 2050245 -280143419 - AluSx SINE Alu -21 291 1 2155 106 0 0 chr1 2050313 2050626 -280143038 - AluSx SINE Alu 0 313 1 1930 89 0 124 chr1 2051201 2051401 -280142263 - AluSq SINE Alu -7 296 153 1569 88 0 5 chr1 2051401 2051606 -280142058 - AluY SINE Alu -107 204 1 1930 89 0 124 chr1 2051606 2051743 -280141921 - AluSq SINE Alu -150 153 1 1461 198 21 3 chr1 2051753 2052041 -280141623 - AluJo SINE Alu -19 293 1 2243 70 0 54 chr1 2053948 2054263 -280139401 - AluY SINE Alu -13 298 1 681 130 10 0 chr1 2054263 2054363 -280139301 - AluY SINE Alu -167 144 44 22 35 0 0 chr1 2054410 2054439 -280139225 + AT_rich Low_complexity Low_complexity 1 29 0 2137 110 7 0 chr1 2054717 2055018 -280138646 - AluSx SINE Alu -9 303 1 1203 151 39 131 chr1 2057565 2057765 -280135899 - AluYb8 SINE Alu -12 306 148 2283 87 3 3 chr1 2057765 2058064 -280135600 - AluY SINE Alu -12 299 1 1203 151 39 131 chr1 2058064 2058200 -280135464 - AluYb8 SINE Alu -170 148 1 2299 84 7 0 chr1 2058208 2058517 -280135147 - AluY SINE Alu 0 311 1 434 174 0 0 chr1 2058689 2058758 -280134906 - FLAM_A SINE Alu -56 76 8 2053 110 10 3 chr1 2059180 2059480 -280134184 - AluSg SINE Alu -8 302 1 1165 96 12 0 chr1 2060705 2060871 -280132793 - AluSq SINE Alu -9 304 137 2017 115 0 55 chr1 2060872 2061202 -280132462 - AluSx SINE Alu 0 312 1 266 136 0 0 chr1 2061202 2061246 -280132418 - Alu SINE Alu -264 44 1 1797 98 132 0 chr1 2061963 2062229 -280131435 - AluY SINE Alu 0 301 1 2327 80 3 0 chr1 2063121 2063421 -280130243 - AluSx SINE Alu -11 301 1 448 132 44 0 chr1 2066339 2066430 -280127234 + FRAM SINE Alu 30 124 -52 1981 128 10 14 chr1 2067188 2067348 -280126316 - AluSx SINE Alu -16 296 136 2491 50 0 3 chr1 2067348 2067650 -280126014 - AluY SINE Alu -10 301 1 1981 128 10 14 chr1 2067650 2067786 -280125878 - AluSx SINE Alu -176 136 1 1921 125 4 0 chr1 2067949 2068266 -280125398 - AluSx SINE Alu 0 326 9 2299 86 20 0 chr1 2068300 2068602 -280125062 - AluY SINE Alu -2 309 2 2205 92 3 3 chr1 2068603 2068907 -280124757 - AluSx SINE Alu -8 304 1 623 101 0 0 chr1 2068907 2069006 -280124658 - HERV17 LTR ERV1 -5187 1709 1611 * 1302 158 3 81 chr1 2068973 2069038 -280124626 - HERV17 LTR ERV1 -3313 4472 4404 2557 50 0 0 chr1 2069038 2069339 -280124325 + AluY SINE Alu 1 301 -10 1302 158 3 81 chr1 2069339 2069473 -280124191 - HERV17 LTR ERV1 -3381 4404 4303 1998 113 0 53 chr1 2069473 2069793 -280123871 - AluSx SINE Alu -9 303 1 1302 158 3 81 chr1 2069793 2069902 -280123762 - HERV17 LTR ERV1 -3482 4303 4187 1883 121 24 17 chr1 2069973 2070271 -280123393 - AluY SINE Alu -10 301 2 578 140 26 88 chr1 2070272 2070612 -280123052 - HERV17 LTR ERV1 -5760 1136 704 * 1380 186 69 9 chr1 2070599 2070933 -280122731 - HERV17 LTR ERV1 -4918 1731 1378 2329 58 17 0 chr1 2071248 2071542 -280122122 + AluY SINE Alu 2 300 -11 2160 82 21 7 chr1 2072245 2072536 -280121128 - AluY SINE Alu -16 295 1 2084 122 3 3 chr1 2072544 2072847 -280120817 - AluSx SINE Alu -9 303 1 205 175 0 0 chr1 2073046 2073086 -280120578 + (CCCCAA)n Simple_repeat Simple_repeat 1 40 0 22 0 0 0 chr1 2074092 2074114 -280119550 + GC_rich Low_complexity Low_complexity 1 22 0 233 271 160 7 chr1 2074728 2074872 -280118792 + L2 LINE L2 2286 2451 -863 312 280 69 42 chr1 2076718 2076900 -280116764 + MIR SINE MIR 15 202 -60 2285 49 3 14 chr1 2077717 2078005 -280115659 - AluY SINE Alu -26 285 1 291 146 0 0 chr1 2078016 2078071 -280115593 + (TA)n Simple_repeat Simple_repeat 1 55 0 522 90 0 108 chr1 2078071 2078108 -280115556 + Harlequin LTR ERV1 1611 1650 -5246 2437 44 0 7 chr1 2078108 2078406 -280115258 - AluY SINE Alu -15 296 1 522 90 0 108 chr1 2078406 2078479 -280115185 + Harlequin LTR ERV1 1650 1709 -5187 2107 102 3 13 chr1 2078479 2078783 -280114881 + AluSx SINE Alu 1 301 -11 2277 91 3 3 chr1 2078783 2079092 -280114572 + AluSx SINE Alu 1 309 -3 1703 108 13 0 chr1 2079145 2079377 -280114287 + AluSg SINE Alu 1 235 -75 180 0 0 0 chr1 2079377 2079397 -280114267 + (A)n Simple_repeat Simple_repeat 1 20 0 2536 62 0 0 chr1 2079406 2079714 -280113950 + AluY SINE Alu 1 308 -3 968 118 51 0 chr1 2079716 2079893 -280113771 + LTR10A LTR ERV1 376 609 0 506 81 0 40 chr1 2079893 2079967 -280113697 + Alu SINE Alu 222 292 -19 905 78 0 8 chr1 2079969 2080097 -280113567 + FLAM_C SINE Alu 1 127 -16 1525 179 26 23 chr1 2080189 2080357 -280113307 - AluSx SINE Alu -3 309 138 2099 111 3 3 chr1 2080357 2080654 -280113010 - AluSq SINE Alu -14 299 3 1525 179 26 23 chr1 2080654 2080793 -280112871 - AluSx SINE Alu -174 138 1 1963 111 28 7 chr1 2080803 2081092 -280112572 - AluSg SINE Alu -15 295 1 1206 163 80 73 chr1 2081168 2081468 -280112196 + AluJo SINE Alu 1 302 -10 250 203 47 31 chr1 2084437 2084501 -280109163 + L1MC3 LINE L1 7496 7560 -225 252 219 16 16 chr1 2084564 2084628 -280109036 + L1MC3 LINE L1 7709 7772 -13 * 1498 230 72 0 chr1 2084627 2085045 -280108619 + L1 LINE L1 3508 3955 -2191 934 92 0 0 chr1 2085060 2085180 -280108484 + AluSq/x SINE Alu 1 120 -193 849 226 76 4 chr1 2085240 2085515 -280108149 + L1 LINE L1 3949 4243 -1903 1811 133 10 43 chr1 2085558 2085715 -280107949 - AluSx SINE Alu -20 292 148 2200 102 0 3 chr1 2085715 2086019 -280107645 - AluSg SINE Alu -7 303 1 1811 133 10 43 chr1 2086019 2086163 -280107501 - AluSx SINE Alu -164 148 1 1856 147 10 0 chr1 2086167 2086466 -280107198 - AluSx SINE Alu -4 308 7 1647 190 0 0 chr1 2086486 2086765 -280106899 - AluJb SINE Alu -25 287 9 269 196 18 0 chr1 2086863 2086919 -280106745 + MLT1I LTR MaLR 353 409 0 1952 132 10 0 chr1 2087134 2087423 -280106241 - AluSc SINE Alu -17 292 1 1286 121 15 5 chr1 2089615 2089813 -280103851 + AluSq SINE Alu 1 200 -113 22 35 0 0 chr1 2089813 2089842 -280103822 + AT_rich Low_complexity Low_complexity 1 29 0 965 183 106 84 chr1 2089853 2089908 -280103756 + AluJb SINE Alu 14 66 -246 2076 114 0 0 chr1 2089908 2090198 -280103466 - AluSg SINE Alu -20 290 1 965 183 106 84 chr1 2090198 2090415 -280103249 + AluJb SINE Alu 66 292 -20 1687 143 4 8 chr1 2090421 2090679 -280102985 + AluSq SINE Alu 1 257 -56 2269 75 7 0 chr1 2091172 2091467 -280102197 - AluY SINE Alu -13 298 2 835 116 16 16 chr1 2094063 2094192 -280099472 + AluSp SINE Alu 13 141 -172 1961 112 10 17 chr1 2094196 2094492 -280099172 + AluY SINE Alu 1 294 -17 1747 122 3 91 chr1 2094867 2095187 -280098477 - AluSx SINE Alu -20 292 1 1417 152 24 110 chr1 2095187 2095521 -280098143 - AluSp SINE Alu -7 306 1 819 115 23 8 chr1 2095535 2095665 -280097999 - AluY SINE Alu -179 132 1 1201 171 15 0 chr1 2095666 2095871 -280097793 - AluJb SINE Alu -20 292 85 2057 114 0 10 chr1 2097203 2097500 -280096164 + AluSg SINE Alu 1 294 -16 300 319 5 32 chr1 2098444 2098629 -280095035 + (TG)n Simple_repeat Simple_repeat 1 180 0 283 300 10 3 chr1 2098650 2098970 -280094694 + (TG)n Simple_repeat Simple_repeat 1 322 0 451 274 12 6 chr1 2099001 2099169 -280094495 + (TG)n Simple_repeat Simple_repeat 2 170 0 228 387 0 12 chr1 2099140 2099308 -280094356 + (CGTG)n Simple_repeat Simple_repeat 1 166 0 * 428 320 6 6 chr1 2099245 2099423 -280094241 + (TG)n Simple_repeat Simple_repeat 2 179 0 1834 144 17 0 chr1 2100380 2100671 -280092993 + AluSx SINE Alu 1 296 -16 2076 79 18 0 chr1 2100673 2100999 -280092665 + AluSp SINE Alu 1 331 0 935 167 61 5 chr1 2101453 2101651 -280092013 + AluSg/x SINE Alu 85 293 -17 1346 149 0 0 chr1 2101654 2101862 -280091802 + AluSg/x SINE Alu 85 292 -20 2173 86 7 0 chr1 2101869 2102161 -280091503 + AluY SINE Alu 1 294 -17 1925 130 3 7 chr1 2103876 2104176 -280089488 + AluSx SINE Alu 1 299 -13 2347 65 13 0 chr1 2104187 2104494 -280089170 + AluY SINE Alu 1 311 0 516 231 0 0 chr1 2104512 2104620 -280089044 + FLAM_A SINE Alu 20 127 -15 1844 148 0 0 chr1 2104883 2105173 -280088491 + AluSc SINE Alu 1 290 -19 1108 39 0 0 chr1 2105181 2105308 -280088356 + AluY SINE Alu 9 135 -176 1850 50 50 0 chr1 2105308 2105546 -280088118 + AluY SINE Alu 60 309 -2 1831 110 41 10 chr1 2105556 2105848 -280087816 + AluSg SINE Alu 3 303 -7 189 0 0 0 chr1 2106558 2106579 -280087085 + (CCCCG)n Simple_repeat Simple_repeat 2 22 0 25 35 0 52 chr1 2106692 2106750 -280086914 + GC_rich Low_complexity Low_complexity 1 55 0 2629 152 79 0 chr1 2107656 2108163 -280085501 + LTR10A LTR ERV1 1 547 -62 481 128 23 35 chr1 2108177 2108263 -280085401 + Alu SINE Alu 221 305 -5 1976 118 30 3 chr1 2108267 2108571 -280085093 + AluSx SINE Alu 1 312 0 856 93 0 16 chr1 2108581 2108710 -280084954 + FLAM_C SINE Alu 1 127 -16 853 171 12 24 chr1 2108791 2108955 -280084709 - AluSg/x SINE Alu -11 301 140 1842 128 23 20 chr1 2108955 2109259 -280084405 - AluSq SINE Alu -8 305 1 237 197 49 33 chr1 2111059 2111120 -280082544 + L1MC3 LINE L1 7496 7557 -228 262 219 31 16 chr1 2111186 2111250 -280082414 + L1MC3 LINE L1 7709 7773 -12 2858 219 49 46 chr1 2111251 2111974 -280081690 + L1 LINE L1 3510 4229 -1917 557 75 0 50 chr1 2111974 2112054 -280081610 + Alu SINE Alu 2 77 -234 2398 82 0 0 chr1 2111985 2112288 -280081376 + AluY SINE Alu 9 311 0 2858 219 49 46 chr1 2112054 2112497 -280081167 + L1 LINE L1 4229 4456 -1690 708 254 55 0 chr1 2112497 2112662 -280081002 + FRAM SINE Alu 1 167 -9 296 235 52 17 chr1 2112686 2112801 -280080863 + L1 LINE L1 4566 4684 -1462 1907 140 0 7 chr1 2112814 2113106 -280080558 - AluSx SINE Alu -15 297 8 8224 51 20 5 chr1 2113106 2114098 -280079566 + LTR13 LTR ERVK 1 1007 0 198 0 0 0 chr1 2114113 2114135 -280079529 + (CA)n Simple_repeat Simple_repeat 1 22 0 2286 88 3 3 chr1 2114389 2114696 -280078968 - AluSp SINE Alu -6 307 1 2029 135 6 3 chr1 2114778 2115082 -280078582 + AluSx SINE Alu 1 308 -4 243 0 0 0 chr1 2115082 2115109 -280078555 + (CAATG)n Simple_repeat Simple_repeat 2 28 0 2341 73 3 3 chr1 2115818 2116121 -280077543 - AluY SINE Alu -8 303 1 579 131 0 0 chr1 2116153 2116252 -280077412 + Harlequin LTR ERV1 1611 1709 -5187 2120 115 3 3 chr1 2116252 2116556 -280077108 + AluSx SINE Alu 1 304 -8 2386 65 20 0 chr1 2116556 2116850 -280076814 + AluY SINE Alu 1 300 -11 1016 115 48 0 chr1 2116850 2117037 -280076627 + LTR10A LTR ERV1 366 609 0 484 95 0 40 chr1 2117037 2117111 -280076553 + Alu SINE Alu 221 291 -19 894 78 0 8 chr1 2117113 2117241 -280076423 + FLAM_C SINE Alu 1 127 -16 1544 175 26 23 chr1 2117333 2117501 -280076163 - AluSx SINE Alu -3 309 138 2130 104 3 3 chr1 2117501 2117798 -280075866 - AluSq SINE Alu -14 299 3 1544 175 26 23 chr1 2117798 2117937 -280075727 - AluSx SINE Alu -174 138 1 1949 119 27 7 chr1 2117946 2118240 -280075424 - AluSg SINE Alu -10 300 1 1206 163 80 73 chr1 2118316 2118616 -280075048 + AluJo SINE Alu 1 302 -10 674 197 16 8 chr1 2119829 2119956 -280073708 + FLAM_C SINE Alu 1 128 -5 1717 163 35 0 chr1 2119960 2120242 -280073422 + AluJb SINE Alu 2 293 -19 252 203 47 31 chr1 2122770 2122834 -280070830 + L1MC3 LINE L1 7496 7560 -225 292 169 31 15 chr1 2122896 2122961 -280070703 + L1MD3 LINE L1 7920 7985 -10 1427 202 40 64 chr1 2122962 2123418 -280070246 + L1 LINE L1 3510 3954 -2192 1262 161 5 0 chr1 2123545 2123750 -280069914 - AluSx SINE Alu -106 206 1 764 197 0 0 chr1 2123752 2123884 -280069780 - AluJo/FLAM SINE Alu -169 133 2 2059 125 0 3 chr1 2123892 2124189 -280069475 - AluSp SINE Alu -17 296 1 2475 65 0 7 chr1 2125182 2125492 -280068172 + AluY SINE Alu 1 308 -3 2455 64 0 6 chr1 2127561 2127872 -280065792 + AluY SINE Alu 1 309 -2 1884 136 4 0 chr1 2127921 2128224 -280065440 - AluSc SINE Alu 0 304 1 1892 155 0 7 chr1 2128226 2128529 -280065135 - AluSx SINE Alu -11 301 1 1904 123 17 17 chr1 2128535 2128828 -280064836 - AluSp SINE Alu -20 293 1 780 191 0 14 chr1 2128828 2128969 -280064695 - AluJb SINE Alu -171 141 3 1860 134 20 0 chr1 2128975 2129267 -280064397 - AluSx SINE Alu -14 298 1 2087 100 3 32 chr1 2130318 2130629 -280063035 - AluSp SINE Alu -11 302 1 2054 126 0 0 chr1 2131442 2131736 -280061928 - AluSq SINE Alu -19 294 1 296 161 18 0 chr1 2133731 2133787 -280059877 - MLT1I LTR MaLR 0 409 353 1554 206 0 13 chr1 2133874 2134175 -280059489 + AluJb SINE Alu 1 297 -15 1971 121 10 10 chr1 2134183 2134473 -280059191 + AluSx SINE Alu 13 302 -10 281 261 203 7 chr1 2134523 2134661 -280059003 - MLT1A1 LTR MaLR -73 292 128 2856 224 49 42 chr1 2134703 2134738 -280058926 - L1M4 LINE L1 -1434 4712 4679 1964 100 0 0 chr1 2134738 2134998 -280058666 + AluSx SINE Alu 2 261 -51 2856 224 49 42 chr1 2134998 2135132 -280058532 - L1M4 LINE L1 -1467 4679 4547 2138 102 0 10 chr1 2135132 2135437 -280058227 - AluSx SINE Alu -10 302 1 2856 224 49 42 chr1 2135437 2135558 -280058106 - L1M4 LINE L1 -1599 4547 4428 2431 72 7 0 chr1 2135558 2135865 -280057799 + AluY SINE Alu 1 309 -2 2856 224 49 42 chr1 2135865 2136257 -280057407 - L1M4 LINE L1 -1718 4428 4040 1805 113 4 0 chr1 2136257 2136513 -280057151 + AluSp SINE Alu 49 305 -8 1968 92 58 20 chr1 2136514 2136806 -280056858 + AluY SINE Alu 1 303 -8 2856 224 49 42 chr1 2136806 2137240 -280056424 - L1M4 LINE L1 -2105 4041 3510 292 169 31 15 chr1 2137241 2137306 -280056358 - L1MD3 LINE L1 -10 7985 7920 250 203 47 31 chr1 2137368 2137432 -280056232 - L1MC3 LINE L1 -225 7560 7496 1700 123 22 75 chr1 2139235 2139553 -280054111 + AluSq SINE Alu 1 301 -12 854 200 0 25 chr1 2139553 2139713 -280053951 + AluSg/x SINE Alu 138 293 -17 842 102 16 23 chr1 2139796 2139924 -280053740 - FLAM_C SINE Alu -16 127 1 1863 129 13 26 chr1 2139926 2140017 -280053647 - AluSx SINE Alu -13 299 208 1495 182 102 62 chr1 2140017 2140450 -280053214 + LTR7 LTR ERV1 1 450 0 1863 129 13 26 chr1 2140450 2140661 -280053003 - AluSx SINE Alu -104 208 1 489 134 24 0 chr1 2140666 2140748 -280052916 - Alu SINE Alu 0 310 227 2137 158 140 0 chr1 2140767 2141107 -280052557 - LTR10A LTR ERV1 -62 547 119 1829 135 204 13 chr1 2141107 2141485 -280052179 + LTR7 LTR ERV1 1 450 0 2137 158 140 0 chr1 2141485 2141624 -280052040 - LTR10A LTR ERV1 -490 119 1 25 35 0 52 chr1 2142175 2142233 -280051431 + GC_rich Low_complexity Low_complexity 1 55 0 189 68 68 0 chr1 2142346 2142390 -280051274 + (CGGGG)n Simple_repeat Simple_repeat 1 47 0 680 135 10 0 chr1 2142910 2143014 -280050650 - AluSq/x SINE Alu -207 105 1 1171 194 0 5 chr1 2144733 2144955 -280048709 - AluSg/x SINE Alu -7 305 85 1721 145 39 0 chr1 2144958 2145241 -280048423 - AluSx SINE Alu -18 294 1 2028 108 20 7 chr1 2146268 2146574 -280047090 - AluSq SINE Alu 0 313 4 1776 163 20 0 chr1 2146576 2146876 -280046788 - AluSx SINE Alu -6 306 1 318 339 6 27 chr1 2147786 2147969 -280045695 + (CACG)n Simple_repeat Simple_repeat 1 179 0 * 494 279 6 6 chr1 2147881 2148060 -280045604 + (CA)n Simple_repeat Simple_repeat 1 179 0 315 238 17 0 chr1 2148088 2148260 -280045404 + (CA)n Simple_repeat Simple_repeat 2 176 0 383 279 0 53 chr1 2148284 2148474 -280045190 + (CA)n Simple_repeat Simple_repeat 1 180 0 216 0 0 0 chr1 2148531 2148555 -280045109 + (CA)n Simple_repeat Simple_repeat 2 25 0 2057 114 0 10 chr1 2149095 2149392 -280044272 - AluSg SINE Alu -16 294 1 1170 144 35 5 chr1 2150673 2150875 -280042789 + AluJb SINE Alu 85 292 -20 2148 76 7 26 chr1 2150887 2151191 -280042473 + AluY SINE Alu 12 309 -2 1827 118 3 88 chr1 2151564 2151893 -280041771 - AluSx SINE Alu -11 301 1 2058 138 0 3 chr1 2151900 2152205 -280041459 - AluSp SINE Alu -9 304 1 2416 67 0 0 chr1 2155278 2155578 -280038086 - AluY SINE Alu -11 300 1 1470 195 21 7 chr1 2155590 2155872 -280037792 - AluJb SINE Alu -26 286 1 1948 143 13 0 chr1 2155876 2156183 -280037481 - AluSx SINE Alu -1 311 1 2157 124 0 10 chr1 2157819 2158126 -280035538 - AluSq SINE Alu -8 305 2 270 196 18 0 chr1 2159974 2160030 -280033634 - MLT1I LTR MaLR 0 409 353 1568 191 20 10 chr1 2160117 2160411 -280033253 + AluJb SINE Alu 1 297 -15 2805 3 0 0 chr1 2160412 2160720 -280032944 + AluYa5 SINE Alu 1 308 -3 1646 164 3 24 chr1 2160737 2161029 -280032635 + AluSx SINE Alu 4 289 -23 2148 112 7 0 chr1 2161037 2161342 -280032322 + AluSc SINE Alu 1 307 -2 2334 80 0 16 chr1 2161356 2161670 -280031994 + AluY SINE Alu 1 309 -2 817 248 8 29 chr1 2363121 2363359 -279830305 + AluSq SINE Alu 4 236 -77 231 302 113 0 chr1 2366783 2366889 -279826775 + MER58C DNA MER1_type 77 194 -21 216 268 61 12 chr1 2369984 2370066 -279823598 - L2 LINE L2 -50 3222 3137 531 251 4 92 chr1 2373166 2373405 -279820259 - L1MA10 LINE L1 0 6334 6117 309 250 0 43 chr1 2376986 2377150 -279816514 + (GGGTG)n Simple_repeat Simple_repeat 3 159 0 211 274 32 0 chr1 2377669 2377731 -279815933 + MER5B DNA MER1_type 1 64 -114 392 331 162 0 chr1 2378729 2378883 -279814781 - MER5A DNA MER1_type -6 183 5 280 358 54 18 chr1 2385740 2385961 -279807703 + MIR SINE MIR 22 250 -12 1651 148 8 4 chr1 2386593 2386849 -279806815 + AluJo SINE Alu 3 259 -53 463 169 19 32 chr1 2386870 2387024 -279806640 + GA-rich Low_complexity Low_complexity 5 156 0 1589 144 95 3 chr1 2387033 2387318 -279806346 + AluJo SINE Alu 1 311 -1 231 88 0 0 chr1 2391050 2391084 -279802580 + (GGGA)n Simple_repeat Simple_repeat 2 35 0 247 306 0 12 chr1 2394135 2394220 -279799444 + (CA)n Simple_repeat Simple_repeat 1 84 0 498 280 0 4 chr1 2396508 2396740 -279796924 + (TG)n Simple_repeat Simple_repeat 1 230 0 239 239 182 0 chr1 2398696 2398784 -279794880 - L2 LINE L2 -5 3267 3164 201 248 272 8 chr1 2400043 2400168 -279793496 - MER5A DNA MER1_type 0 189 32 255 289 100 0 chr1 2401446 2401536 -279792128 + MIR SINE MIR 94 192 -70 226 286 26 0 chr1 2402113 2402190 -279791474 + L2 LINE L2 2896 2974 -339 973 278 58 8 chr1 2405595 2405958 -279787706 + MLT1C LTR MaLR 11 391 -76 324 274 62 18 chr1 2406560 2406673 -279786991 - MIR3 SINE MIR -10 198 81 413 146 10 29 chr1 2408439 2408542 -279785122 + CT-rich Low_complexity Low_complexity 2 102 0 2502 56 0 0 chr1 2408810 2409115 -279784549 + AluY SINE Alu 1 305 -6 307 216 15 0 chr1 2412161 2412246 -279781418 + L1MB5 LINE L1 5688 5773 -393 433 283 114 4 chr1 2412429 2412666 -279780998 + L1MB5 LINE L1 5880 6142 -32 210 357 0 0 chr1 2416383 2416523 -279777141 + (TG)n Simple_repeat Simple_repeat 2 141 0 192 210 32 16 chr1 2416576 2416638 -279777026 + L2 LINE L2 2907 2969 -303 213 24 98 0 chr1 2417210 2417251 -279776413 + (CAAA)n Simple_repeat Simple_repeat 2 46 0 257 309 79 8 chr1 2417982 2418108 -279775556 - MIR3 SINE MIR -63 145 11 216 0 0 0 chr1 2422073 2422097 -279771567 + (T)n Simple_repeat Simple_repeat 1 24 0 276 30 0 0 chr1 2422219 2422252 -279771412 + (CA)n Simple_repeat Simple_repeat 1 33 0 279 325 16 8 chr1 2422273 2422396 -279771268 + (CA)n Simple_repeat Simple_repeat 1 124 0 195 276 0 0 chr1 2422421 2422497 -279771167 + (CA)n Simple_repeat Simple_repeat 1 76 0 270 357 7 7 chr1 2422526 2422666 -279770998 + (CA)n Simple_repeat Simple_repeat 1 140 0 1432 288 31 6 chr1 2428696 2429175 -279764489 + L1MB5 LINE L1 5684 6174 0 2168 115 0 6 chr1 2429208 2429521 -279764143 + AluSq SINE Alu 1 311 -2 180 125 0 0 chr1 2431513 2431545 -279762119 + (TCCCC)n Simple_repeat Simple_repeat 3 34 0 2426 247 61 7 chr1 2433413 2434121 -279759543 + L1MB7 LINE L1 5427 6172 -12 1421 285 42 0 chr1 2434202 2434609 -279759055 - MER82 DNA MER2_type 0 653 230 476 182 17 149 chr1 2434621 2434802 -279758862 + Tigger1 DNA MER2_type 1 157 -2261 * 647 207 173 0 chr1 2434800 2434979 -279758685 + Tigger1 DNA MER2_type 2209 2418 0 * 808 245 15 15 chr1 2434979 2435177 -279758487 - MER82 DNA MER2_type -455 198 1 1925 172 0 6 chr1 2435829 2436143 -279757521 - AluJo SINE Alu 0 312 1 2106 130 7 0 chr1 2438875 2439176 -279754488 + AluSx SINE Alu 1 303 -9 1541 189 7 0 chr1 2439369 2439665 -279753999 + MER47A DNA MER2_type 69 366 0 249 289 45 77 chr1 2444604 2444760 -279748904 - MIR3 SINE MIR -37 171 21 22 0 0 0 chr1 2445420 2445442 -279748222 + AT_rich Low_complexity Low_complexity 1 22 0 396 0 0 0 chr1 2446513 2446557 -279747107 + (CA)n Simple_repeat Simple_repeat 1 44 0 251 243 0 58 chr1 2447545 2447648 -279746016 + GA-rich Low_complexity Low_complexity 2 98 0 760 41 0 0 chr1 2448888 2448985 -279744679 + AluSc SINE Alu 212 308 -1 298 374 6 18 chr1 2450236 2450399 -279743265 + (TG)n Simple_repeat Simple_repeat 2 162 0 244 259 84 69 chr1 2450712 2450843 -279742821 - MIR3 SINE MIR -45 163 31 186 43 0 0 chr1 2456381 2456404 -279737260 + (CAGAGA)n Simple_repeat Simple_repeat 2 24 0 1675 140 0 0 chr1 2457833 2458069 -279735595 - AluSx SINE Alu -76 236 1 227 345 18 0 chr1 2460539 2460649 -279733015 + (CACG)n Simple_repeat Simple_repeat 1 112 0 381 228 0 102 chr1 2461376 2461573 -279732091 + (TAAA)n Simple_repeat Simple_repeat 4 180 0 243 262 19 56 chr1 2461586 2461743 -279731921 + (TGAA)n Simple_repeat Simple_repeat 1 151 0 2184 117 3 0 chr1 2463745 2464053 -279729611 - AluSg SINE Alu -1 309 1 253 411 47 0 chr1 2464331 2464498 -279729166 - MIR SINE MIR -37 225 44 474 165 124 0 chr1 2469276 2469373 -279724291 + MIR SINE MIR 36 144 -118 348 337 29 38 chr1 2470342 2470580 -279723084 - MIR SINE MIR -14 248 20 338 177 0 31 chr1 2470634 2470730 -279722934 + (CAT)n Simple_repeat Simple_repeat 3 95 0 1080 130 11 6 chr1 2470751 2471104 -279722560 + (CACCAT)n Simple_repeat Simple_repeat 1 356 0 258 231 0 0 chr1 2471132 2471223 -279722441 + (CAT)n Simple_repeat Simple_repeat 2 92 0 385 319 36 22 chr1 2471255 2471393 -279722271 - MIR SINE MIR -31 231 92 286 339 17 0 chr1 2472221 2472336 -279721328 + MIR SINE MIR 66 182 -80 293 200 0 0 chr1 2473918 2473973 -279719691 + MER2 DNA MER2_type 40 94 -251 216 97 0 0 chr1 2474098 2474129 -279719535 + (TGAA)n Simple_repeat Simple_repeat 1 31 0 490 315 98 49 chr1 2474181 2474568 -279719096 - MLT1I LTR MaLR -3 406 1 196 279 16 49 chr1 2474680 2474741 -279718923 - MIR SINE MIR -12 250 192 2300 57 4 0 chr1 2474917 2475221 -279718443 - AluY SINE Alu 0 305 1 582 280 30 10 chr1 2475223 2475423 -279718241 - L1MC2 LINE L1 -16 6328 6125 420 326 71 10 chr1 2475435 2475631 -279718033 - L1MC2 LINE L1 -253 6091 5884 7950 28 5 3 chr1 2476503 2477552 -279716112 - L1PA3 LINE L1 -1018 5128 4078 7676 27 3 3 chr1 2477552 2478586 -279715078 + L1PA3 LINE L1 5116 6150 0 198 0 0 0 chr1 2478586 2478608 -279715056 + (TTAAA)n Simple_repeat Simple_repeat 4 25 0 201 74 0 0 chr1 2480472 2480499 -279713165 + (CACCT)n Simple_repeat Simple_repeat 3 29 0 231 176 39 0 chr1 2482552 2482603 -279711061 + C-rich Low_complexity Low_complexity 3 55 0 184 300 67 22 chr1 2486067 2486157 -279707507 + MER5A DNA MER1_type 61 154 -35 428 337 56 22 chr1 2487342 2487520 -279706144 - MIR SINE MIR -72 190 7 565 230 11 0 chr1 2487642 2487820 -279705844 + (TGGA)n Simple_repeat Simple_repeat 1 180 0 273 228 0 0 chr1 2487835 2487914 -279705750 + (TGGA)n Simple_repeat Simple_repeat 4 82 0 674 201 0 22 chr1 2487931 2488115 -279705549 + (TGGA)n Simple_repeat Simple_repeat 1 180 0 925 174 7 0 chr1 2488127 2488419 -279705245 + (TGGA)n Simple_repeat Simple_repeat 1 294 0 930 159 3 0 chr1 2488554 2488872 -279704792 + (TGGA)n Simple_repeat Simple_repeat 1 319 0 270 0 0 0 chr1 2488888 2488918 -279704746 + (GCTG)n Simple_repeat Simple_repeat 1 30 0 219 139 0 0 chr1 2488919 2488955 -279704709 + (TGGA)n Simple_repeat Simple_repeat 4 39 0 203 275 73 55 chr1 2490334 2490443 -279703221 - MIR SINE MIR -111 151 41 1108 242 109 19 chr1 2490497 2490918 -279702746 + MLT1C LTR MaLR 9 467 0 1657 225 42 9 chr1 2491930 2492378 -279701286 - L1MB3 LINE L1 -8 6175 5713 214 204 0 0 chr1 2492629 2492673 -279700991 + MIR SINE MIR 98 141 -67 21 36 0 0 chr1 2494828 2494856 -279698808 + AT_rich Low_complexity Low_complexity 1 28 0 400 321 71 12 chr1 2495309 2495477 -279698187 - MIR SINE MIR -80 182 5 205 392 39 0 chr1 2496006 2496136 -279697528 + MIR SINE MIR 105 239 -23 326 232 32 95 chr1 2496586 2496776 -279696888 + G-rich Low_complexity Low_complexity 2 179 0 220 258 62 21 chr1 2496820 2496917 -279696747 + G-rich Low_complexity Low_complexity 2 102 0 324 252 65 26 chr1 2496938 2497093 -279696571 + G-rich Low_complexity Low_complexity 2 162 0 253 340 30 0 chr1 2497918 2498018 -279695646 + MIR SINE MIR 81 183 -79 936 275 57 8 chr1 2501002 2501373 -279692291 + MLT1C LTR MaLR 75 463 -4 312 292 35 0 chr1 2502504 2502617 -279691047 + L1MB4 LINE L1 5946 6062 -118 * 518 326 26 5 chr1 2502610 2502803 -279690861 + L1MB4 LINE L1 5978 6174 -6 477 352 28 0 chr1 2503993 2504172 -279689492 + MIR SINE MIR 50 233 -29 734 178 17 23 chr1 2504860 2505034 -279688630 + MER53 DNA DNA 13 185 -4 1864 214 26 5 chr1 2505241 2505620 -279688044 + MLT1B LTR MaLR 4 390 0 333 256 53 53 chr1 2505810 2505826 -279687838 + L1M4 LINE L1 3069 3084 -3062 2002 110 23 10 chr1 2505826 2506134 -279687530 + AluSx SINE Alu 1 312 0 333 256 53 53 chr1 2506134 2506250 -279687414 + L1M4 LINE L1 3083 3201 -2945 53 57 0 0 chr1 2506433 2506521 -279687143 + AT_rich Low_complexity Low_complexity 1 88 0 180 0 0 0 chr1 2507453 2507473 -279686191 + (T)n Simple_repeat Simple_repeat 1 20 0 319 203 14 0 chr1 2507596 2507665 -279685999 - MER53 DNA DNA -117 72 3 999 100 0 0 chr1 2512468 2512618 -279681046 + (TGGA)n Simple_repeat Simple_repeat 4 153 0 1878 151 3 10 chr1 2514310 2514622 -279679042 - AluSx SINE Alu -2 310 1 205 325 33 0 chr1 2514670 2514744 -279678920 - MIR SINE MIR -61 147 71 183 328 76 23 chr1 2517093 2517224 -279676440 - MIR3 SINE MIR -46 162 25 462 190 27 54 chr1 2517672 2517856 -279675808 + (CA)n Simple_repeat Simple_repeat 1 179 0 210 207 29 23 chr1 2517897 2518071 -279675593 + (CA)n Simple_repeat Simple_repeat 1 175 0 437 228 47 12 chr1 2518082 2518253 -279675411 + (CA)n Simple_repeat Simple_repeat 1 177 0 350 268 48 18 chr1 2518292 2518460 -279675204 + (CA)n Simple_repeat Simple_repeat 1 173 0 2148 91 3 0 chr1 2521119 2521431 -279672233 + AluSx SINE Alu 1 313 0 319 229 135 0 chr1 2528447 2528543 -279665121 + MIR SINE MIR 35 143 -65 22 0 0 0 chr1 2533290 2533312 -279660352 + AT_rich Low_complexity Low_complexity 1 22 0 390 362 54 25 chr1 2533384 2533667 -279659997 + L1M4 LINE L1 4407 4697 -1449 22 0 0 0 chr1 2534076 2534098 -279659566 + AT_rich Low_complexity Low_complexity 1 22 0 224 175 16 0 chr1 2535008 2535071 -279658593 + GA-rich Low_complexity Low_complexity 1 64 0 234 128 0 0 chr1 2535416 2535455 -279658209 + (CA)n Simple_repeat Simple_repeat 1 39 0 474 228 12 20 chr1 2535495 2535850 -279657814 + (CA)n Simple_repeat Simple_repeat 1 351 0 245 105 0 0 chr1 2540354 2540392 -279653272 + tRNA-Gly-GGA tRNA tRNA 1 38 -37 180 0 0 0 chr1 2542090 2542110 -279651554 + (TAAAA)n Simple_repeat Simple_repeat 3 22 0 205 304 0 38 chr1 2546050 2546129 -279647535 + (CACG)n Simple_repeat Simple_repeat 2 77 0 267 189 0 0 chr1 2546646 2546699 -279646965 + (TG)n Simple_repeat Simple_repeat 2 54 0 590 251 0 6 chr1 2546746 2546921 -279646743 + (CA)n Simple_repeat Simple_repeat 1 174 0 511 252 3 10 chr1 2550191 2550505 -279643159 + (TG)n Simple_repeat Simple_repeat 1 311 0 219 139 0 0 chr1 2550521 2550557 -279643107 + (CGTG)n Simple_repeat Simple_repeat 3 38 0 760 189 0 11 chr1 2550570 2550750 -279642914 + (TG)n Simple_repeat Simple_repeat 1 178 0 441 270 79 11 chr1 2551130 2551319 -279642345 + MER20 DNA MER1_type 5 206 -13 207 200 22 0 chr1 2551387 2551432 -279642232 + CT-rich Low_complexity Low_complexity 4 49 0 180 225 12 25 chr1 2553307 2553387 -279640277 + CT-rich Low_complexity Low_complexity 2 80 0 1345 110 0 88 chr1 2555768 2556027 -279637637 - AluSg/x SINE Alu 0 312 86 249 314 0 10 chr1 2556532 2556634 -279637030 + L1M4 LINE L1 4934 5034 -1112 217 296 10 61 chr1 2556763 2556861 -279636803 + MIR SINE MIR 102 194 -68 239 313 115 0 chr1 2558194 2558290 -279635374 + L2 LINE L2 2420 2526 -788 979 209 164 21 chr1 2561418 2561748 -279631916 + MLT1B LTR MaLR 14 390 0 213 273 81 30 chr1 2562659 2562758 -279630906 + MIR SINE MIR 43 146 -62 225 94 0 0 chr1 2574954 2574986 -279618678 + (TGAA)n Simple_repeat Simple_repeat 2 33 0 2236 84 17 0 chr1 2575818 2576145 -279617519 + AluSx SINE Alu 6 337 0 1987 80 58 11 chr1 2576146 2576455 -279617209 + AluY SINE Alu 1 311 0 27 0 0 0 chr1 2576585 2576612 -279617052 + AT_rich Low_complexity Low_complexity 1 27 0 266 211 0 60 chr1 2577594 2577727 -279615937 + (GGCTG)n Simple_repeat Simple_repeat 1 125 0 291 329 90 7 chr1 2579259 2579414 -279614250 - MIR SINE MIR -83 179 12 24 0 0 0 chr1 2589516 2589540 -279604124 + AT_rich Low_complexity Low_complexity 1 24 0 270 81 0 0 chr1 2590447 2590484 -279603180 + (CA)n Simple_repeat Simple_repeat 2 38 0 195 292 0 15 chr1 2590597 2590662 -279603002 + MIR SINE MIR 80 143 -119 24 53 0 0 chr1 2595005 2595043 -279598621 + GC_rich Low_complexity Low_complexity 1 38 0 214 235 0 0 chr1 2595252 2595303 -279598361 + C-rich Low_complexity Low_complexity 1 51 0 99 82 0 0 chr1 2595359 2595591 -279598073 + GC_rich Low_complexity Low_complexity 1 232 0 225 0 0 0 chr1 2595814 2595839 -279597825 + (CCG)n Simple_repeat Simple_repeat 2 26 0 211 209 30 30 chr1 2596351 2596418 -279597246 + C-rich Low_complexity Low_complexity 4 70 0 203 250 19 0 chr1 2599461 2599513 -279594151 + CT-rich Low_complexity Low_complexity 2 54 0 22 0 0 0 chr1 2601111 2601133 -279592531 + GC_rich Low_complexity Low_complexity 1 22 0 216 189 0 0 chr1 2601458 2601495 -279592169 + MIR SINE MIR 108 144 -118 314 328 38 8 chr1 2604261 2604392 -279589272 - MIR SINE MIR -100 162 28 1198 177 0 0 chr1 2605706 2605926 -279587738 + L1MB8 LINE L1 5764 5983 -195 966 284 156 16 chr1 2606104 2606547 -279587117 - L2 LINE L2 0 3313 2809 1450 213 25 50 chr1 2606551 2606983 -279586681 + MLT1D LTR MaLR 89 503 -2 1003 265 58 11 chr1 2607327 2607686 -279585978 - HAL1 LINE L1 -895 1612 1237 293 282 261 31 chr1 2607691 2608017 -279585647 - HAL1 LINE L1 -1544 963 563 416 315 164 42 chr1 2608027 2608167 -279585497 - HAL1 LINE L1 -2046 461 339 2089 103 10 10 chr1 2608167 2608459 -279585205 - AluSq SINE Alu -21 292 1 416 315 164 42 chr1 2608459 2608727 -279584937 - HAL1 LINE L1 -2168 339 3 377 300 42 17 chr1 2609009 2609129 -279584535 + L1ME4a LINE L1 5978 6100 -21 1102 145 0 16 chr1 2609168 2609354 -279584310 + AluJb SINE Alu 129 311 -1 1079 263 138 5 chr1 2609804 2610188 -279583476 - L1MB4 LINE L1 0 6180 5746 2544 113 17 87 chr1 2611264 2611724 -279581940 + MSTA LTR MaLR 1 428 0 335 306 9 9 chr1 2612503 2612611 -279581053 + L2 LINE L2 3206 3313 0 628 172 22 21 chr1 2612627 2612908 -279580756 + (TGGA)n Simple_repeat Simple_repeat 1 281 0 919 160 7 19 chr1 2612950 2613219 -279580445 + (TGGA)n Simple_repeat Simple_repeat 1 265 0 755 189 15 15 chr1 2613233 2613766 -279579898 + (TGGG)n Simple_repeat Simple_repeat 1 533 0 261 243 0 0 chr1 2613782 2613852 -279579812 + (TGGG)n Simple_repeat Simple_repeat 3 72 0 3202 217 29 41 chr1 2615823 2616879 -279576785 - L1MB4 LINE L1 -893 5253 4210 2198 253 44 6 chr1 2616881 2617958 -279575706 - L1MB4 LINE L1 -2698 3448 2128 1577 264 67 32 chr1 2617965 2618909 -279574755 - L1MEc LINE L1 -4287 2109 1133 712 174 0 43 chr1 2618953 2619091 -279574573 - FLAM_C SINE Alu -1 132 1 6599 156 56 48 chr1 2619241 2619771 -279573893 + Tigger1 DNA MER2_type 936 1460 -958 2441 138 40 0 chr1 2619771 2620142 -279573522 + L1PA15 LINE L1 5777 6162 -3 6599 156 56 48 chr1 2620142 2620615 -279573049 + Tigger1 DNA MER2_type 1460 1928 -490 1753 179 3 0 chr1 2620615 2620911 -279572753 - AluJo SINE Alu -15 297 1 6599 156 56 48 chr1 2620911 2621232 -279572432 + Tigger1 DNA MER2_type 1928 2277 -141 2064 129 10 0 chr1 2621232 2621542 -279572122 - AluSq SINE Alu 0 313 1 6599 156 56 48 chr1 2621542 2621686 -279571978 + Tigger1 DNA MER2_type 2277 2418 0 338 323 76 66 chr1 2621832 2622030 -279571634 + L1ME LINE L1 3595 3794 -2352 1028 154 0 0 chr1 2622050 2622206 -279571458 + AluJo SINE Alu 3 158 -154 186 209 0 0 chr1 2622338 2622381 -279571283 + (TGGA)n Simple_repeat Simple_repeat 3 45 0 268 344 62 43 chr1 2622534 2622599 -279571065 + L1ME LINE L1 3784 3846 -2300 2064 128 6 6 chr1 2622599 2622911 -279570753 + AluSx SINE Alu 1 312 0 268 344 62 43 chr1 2622911 2623599 -279570065 + L1ME LINE L1 3846 4559 -1587 1010 215 10 0 chr1 2623599 2623804 -279569860 - L1MA4 LINE L1 -7 6293 6087 268 344 62 43 chr1 2623804 2623960 -279569704 + L1ME LINE L1 4559 4711 -1435 343 299 49 14 chr1 2624392 2624536 -279569128 + L1ME LINE L1 5364 5512 -654 226 285 58 7 chr1 2624820 2624957 -279568707 + (CA)n Simple_repeat Simple_repeat 1 144 0 * 251 248 57 25 chr1 2624886 2625043 -279568621 + (CATA)n Simple_repeat Simple_repeat 1 162 0 * 400 217 59 19 chr1 2624974 2625289 -279568375 + (CA)n Simple_repeat Simple_repeat 1 327 0 212 146 0 42 chr1 2625446 2625494 -279568170 + (GGGGA)n Simple_repeat Simple_repeat 1 46 0 306 331 64 25 chr1 2626375 2626532 -279567132 - MIR SINE MIR -92 170 8 308 248 51 15 chr1 2626839 2626976 -279566688 - LTR37A LTR ERV1 -1 425 284 197 343 97 22 chr1 2627424 2627558 -279566106 + L2 LINE L2 3103 3246 -26 544 158 20 82 chr1 2628106 2628252 -279565412 - MER31B LTR ERV1 -295 171 35 296 235 15 0 chr1 2630793 2630861 -279562803 - L1MC5 LINE L1 -918 7043 6975 653 220 147 81 chr1 2631385 2631767 -279561897 - MLT2D LTR ERVL -2 412 6 362 275 165 16 chr1 2638400 2638582 -279555082 + MIR SINE MIR 30 238 -24 1735 157 59 0 chr1 2639401 2639688 -279553976 - AluJo SINE Alu -8 304 1 192 409 0 0 chr1 2640133 2640226 -279553438 + L2 LINE L2 3146 3238 -75 864 219 0 13 chr1 2640408 2640729 -279552935 - MLT1B LTR MaLR -28 362 5 253 326 131 20 chr1 2641688 2641933 -279551731 + LTR16A1 LTR ERVL 1 272 -185 306 355 23 61 chr1 2642152 2642366 -279551298 + MIR SINE MIR 12 217 -45 620 295 52 44 chr1 2643383 2643769 -279549895 + L1MEd LINE L1 32 420 -5699 344 220 18 37 chr1 2643828 2643937 -279549727 + L1M4 LINE L1 14 120 -6422 266 264 28 0 chr1 2643944 2644016 -279549648 + ERVL LTR ERVL 3784 3857 -1907 1547 176 105 14 chr1 2644048 2644411 -279549253 + MSTA LTR MaLR 6 401 -27 435 291 34 22 chr1 2644548 2644727 -279548937 + L1M4 LINE L1 2630 2810 -3834 837 167 0 7 chr1 2647390 2647528 -279546136 + AluJb SINE Alu 160 296 -16 23 33 0 0 chr1 2651208 2651238 -279542426 + GC_rich Low_complexity Low_complexity 1 30 0 814 271 31 68 chr1 2653215 2653599 -279540065 - MLT1B LTR MaLR -12 378 9 526 263 186 43 chr1 2653818 2654141 -279539523 - MLT1F1 LTR MaLR -28 539 171 388 111 25 0 chr1 2654163 2654244 -279539420 + (CAGAGA)n Simple_repeat Simple_repeat 2 84 0 206 191 26 70 chr1 2655148 2655263 -279538401 + (GTGTG)n Simple_repeat Simple_repeat 1 110 0 2410 59 0 0 chr1 2655447 2655736 -279537928 - AluY SINE Alu -22 289 1 1103 66 0 0 chr1 2655738 2655874 -279537790 - AluSq/x SINE Alu -177 136 1 414 121 0 0 chr1 2655875 2655941 -279537723 + THE1B LTR MaLR 299 364 0 368 242 66 0 chr1 2656970 2657078 -279536586 - MLT1I LTR MaLR -243 166 53 273 200 15 0 chr1 2657122 2657187 -279536477 + MER53 DNA DNA 99 164 -25 * 283 200 15 0 chr1 2657128 2657187 -279536477 - MER53 DNA DNA -94 95 36 2655 168 7 2 chr1 2657187 2657609 -279536055 - MSTB LTR MaLR 0 426 3 9352 165 21 24 chr1 2657612 2659267 -279534397 - MSTB-int LTR MaLR -1 1650 1 2686 158 7 19 chr1 2659267 2659698 -279533966 - MSTB LTR MaLR 0 426 1 509 278 17 52 chr1 2666540 2666713 -279526951 - MIR SINE MIR -76 186 20 209 333 48 48 chr1 2670577 2670703 -279522961 + MER91B DNA MER1_type 30 155 -35 1479 284 103 8 chr1 2670933 2671399 -279522265 - L1M4 LINE L1 -1326 4803 4383 1985 142 3 0 chr1 2671399 2671687 -279521977 + AluSx SINE Alu 1 289 -23 1479 284 103 8 chr1 2671687 2672133 -279521531 - L1M4 LINE L1 -1746 4383 3804 318 283 51 74 chr1 2672137 2672740 -279520924 - L1MEd LINE L1 -3756 2373 1819 413 278 56 48 chr1 2672781 2672998 -279520666 - L1MEd LINE L1 -4590 1720 1506 2526 101 27 27 chr1 2672998 2673373 -279520291 + THE1C LTR MaLR 1 375 0 10403 103 45 39 chr1 2673373 2674944 -279518720 + THE1C-int LTR MaLR 1 1580 0 2356 118 21 24 chr1 2674946 2675320 -279518344 + THE1C LTR MaLR 3 375 0 413 278 56 48 chr1 2675320 2675490 -279518174 - L1MEd LINE L1 -4804 1506 1326 795 292 42 132 chr1 2675652 2676206 -279517458 - L1MEd LINE L1 -5036 1093 601 323 127 16 0 chr1 2676943 2677006 -279516658 + GA-rich Low_complexity Low_complexity 2 65 0 895 207 93 21 chr1 2679140 2679420 -279514244 - MLT1C LTR MaLR -162 305 6 249 168 84 28 chr1 2679825 2679968 -279513696 + (CAGCC)n Simple_repeat Simple_repeat 5 155 0 448 258 110 12 chr1 2681355 2681518 -279512146 + MER45C DNA AcHobo 42 220 -733 22 35 0 0 chr1 2682077 2682106 -279511558 + AT_rich Low_complexity Low_complexity 1 29 0 317 208 28 0 chr1 2682966 2683038 -279510626 - MER69 DNA AcHobo -3 2523 2450 411 308 18 0 chr1 2684392 2684561 -279509103 + (CA)n Simple_repeat Simple_repeat 1 172 0 276 328 5 43 chr1 2684497 2684683 -279508981 + (CATA)n Simple_repeat Simple_repeat 2 180 0 * 378 242 4 0 chr1 2684739 2685018 -279508646 + (CA)n Simple_repeat Simple_repeat 1 280 0 468 239 6 10 chr1 2685055 2685365 -279508299 + (CA)n Simple_repeat Simple_repeat 1 308 0 290 227 127 9 chr1 2685412 2685522 -279508142 + MLT1A2 LTR MaLR 181 303 -71 281 240 13 0 chr1 2685534 2685609 -279508055 + (CA)n Simple_repeat Simple_repeat 2 77 0 22 0 0 0 chr1 2686330 2686352 -279507312 + AT_rich Low_complexity Low_complexity 1 22 0 1532 155 85 7 chr1 2686359 2686630 -279507034 + AluJo SINE Alu 3 294 -18 280 281 21 42 chr1 2687585 2687681 -279505983 - MIR3 SINE MIR -20 188 95 454 299 24 6 chr1 2688049 2688224 -279505440 - MIR SINE MIR -63 145 11 1113 276 97 11 chr1 2688312 2688775 -279504889 + HAL1 LINE L1 1337 1839 -668 540 283 251 35 chr1 2688933 2689321 -279504343 + L1M2 LINE L1 1666 3127 -82 394 282 0 15 chr1 2689481 2689612 -279504052 - HAL1 LINE L1 -753 1754 1626 330 294 5 0 chr1 2691381 2691595 -279502069 + (TG)n Simple_repeat Simple_repeat 1 215 0 234 322 0 0 chr1 2691631 2691811 -279501853 + (TG)n Simple_repeat Simple_repeat 1 180 0 274 314 0 4 chr1 2691825 2692055 -279501609 + (TG)n Simple_repeat Simple_repeat 1 228 0 837 236 47 79 chr1 2695036 2695417 -279498247 - MLT1B LTR MaLR -21 369 1 245 326 139 0 chr1 2696991 2697120 -279496544 + MIR SINE MIR 46 192 -70 258 314 68 8 chr1 2698321 2698439 -279495225 + L2 LINE L2 3143 3267 -5 306 255 0 0 chr1 2699673 2699767 -279493897 + (TG)n Simple_repeat Simple_repeat 1 94 0 439 227 37 37 chr1 2699986 2700097 -279493567 + MER53 DNA DNA 1 114 -75 2259 160 24 3 chr1 2700097 2700479 -279493185 + MLT1B LTR MaLR 1 390 0 439 227 37 37 chr1 2700479 2700530 -279493134 + MER53 DNA DNA 113 163 -26 1080 147 0 0 chr1 2702650 2703394 -279490270 + (CAGCC)n Simple_repeat Simple_repeat 1 744 0 942 156 23 61 chr1 2704759 2705022 -279488642 - MLT1D LTR MaLR -206 299 47 532 381 34 19 chr1 2706430 2706750 -279486914 + L1MB5 LINE L1 5677 6001 -173 728 242 4 30 chr1 2706894 2707125 -279486539 + L1MB8 LINE L1 5948 6172 -6 246 333 28 0 chr1 2707305 2707413 -279486251 + MER53 DNA DNA 22 132 -57 289 172 16 0 chr1 2707466 2707530 -279486134 - MER53 DNA DNA -124 65 1 404 220 22 0 chr1 2709019 2709110 -279484554 + MIR SINE MIR 28 120 -142 1228 143 5 35 chr1 2710850 2711053 -279482611 + MER107 DNA MER1_type 1 197 0 448 259 125 14 chr1 2711841 2712182 -279481482 + MLT1C LTR MaLR 1 451 -16 268 400 0 7 chr1 2713404 2713544 -279480120 + (TG)n Simple_repeat Simple_repeat 1 139 0 227 250 0 30 chr1 2713613 2713745 -279479919 + (TG)n Simple_repeat Simple_repeat 1 128 0 248 239 32 13 chr1 2713797 2713952 -279479712 + (TG)n Simple_repeat Simple_repeat 1 158 0 386 250 0 22 chr1 2713985 2714169 -279479495 + (TG)n Simple_repeat Simple_repeat 1 180 0 373 240 11 17 chr1 2714186 2714365 -279479299 + (TG)n Simple_repeat Simple_repeat 1 178 0 785 243 0 0 chr1 2717359 2717507 -279476157 + FRAM SINE Alu 4 151 -15 196 248 0 16 chr1 2717892 2718017 -279475647 + (CA)n Simple_repeat Simple_repeat 1 123 0 233 320 96 6 chr1 2720408 2720564 -279473100 - MLT1K LTR MaLR -330 258 89 757 211 42 0 chr1 2721779 2721969 -279471695 - MLT1B LTR MaLR -78 312 115 428 190 117 15 chr1 2722057 2722180 -279471484 - MLT1B LTR MaLR -252 138 28 1347 266 59 11 chr1 2722899 2723372 -279470292 - L1MC1 LINE L1 0 6333 5838 262 250 0 0 chr1 2725116 2725176 -279468488 + GA-rich Low_complexity Low_complexity 3 62 0 209 269 29 0 chr1 2727237 2727341 -279466323 + (CACAC)n Simple_repeat Simple_repeat 5 111 0 850 285 79 25 chr1 2727700 2728142 -279465522 - MLT1D LTR MaLR 0 505 40 424 319 30 0 chr1 2728772 2728938 -279464726 + ERVL LTR ERVL 2145 2315 -3449 600 271 79 5 chr1 2729045 2729248 -279464416 - MER20 DNA MER1_type -1 218 1 576 225 60 161 chr1 2730732 2730823 -279462841 + MLT1B LTR MaLR 1 100 -290 294 29 0 0 chr1 2730823 2730858 -279462806 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 576 225 60 161 chr1 2730858 2730869 -279462795 + MLT1B LTR MaLR 100 111 -279 1981 136 0 0 chr1 2730869 2731148 -279462516 - AluSx SINE Alu -33 279 1 576 225 60 161 chr1 2731148 2731461 -279462203 + MLT1B LTR MaLR 111 375 -15 756 339 61 24 chr1 2732030 2732617 -279461047 + ERVL LTR ERVL 4768 5376 -388 202 290 0 19 chr1 2732650 2732757 -279460907 + (TG)n Simple_repeat Simple_repeat 1 105 0 518 239 6 17 chr1 2732770 2732950 -279460714 + (TG)n Simple_repeat Simple_repeat 1 178 0 489 249 0 17 chr1 2733007 2733188 -279460476 + (TG)n Simple_repeat Simple_repeat 1 178 0 517 216 0 28 chr1 2733249 2733430 -279460234 + (TG)n Simple_repeat Simple_repeat 1 176 0 1286 278 34 9 chr1 2734555 2734998 -279458666 + MLT1C LTR MaLR 4 457 -10 417 317 11 11 chr1 2736239 2736419 -279457245 + (TG)n Simple_repeat Simple_repeat 1 180 0 250 132 38 0 chr1 2736683 2736736 -279456928 + (GGGTG)n Simple_repeat Simple_repeat 4 58 0 219 294 95 8 chr1 2736881 2737007 -279456657 + MIR3 SINE MIR 65 201 -7 348 257 73 0 chr1 2738369 2738478 -279455186 - MER53 DNA DNA -72 117 1 1165 254 69 8 chr1 2738733 2739123 -279454541 + MLT1C LTR MaLR 9 422 -45 248 209 60 0 chr1 2739160 2739227 -279454437 + MLT1C LTR MaLR 435 505 0 263 336 9 9 chr1 2739795 2739911 -279453753 + (CACCC)n Simple_repeat Simple_repeat 3 118 0 428 134 52 22 chr1 2740505 2740639 -279453025 + GA-rich Low_complexity Low_complexity 4 141 0 370 302 81 75 chr1 2748227 2748585 -279445079 - L2 LINE L2 -7 3265 2906 240 341 28 50 chr1 2751353 2751532 -279442132 + L2 LINE L2 2996 3170 -102 239 330 19 29 chr1 2752137 2752240 -279441424 - MIR SINE MIR -128 134 33 2046 119 7 3 chr1 2753606 2753900 -279439764 - AluSx SINE Alu -17 295 1 1180 44 11 33 chr1 2753916 2754099 -279439565 + (TTTC)n Simple_repeat Simple_repeat 2 180 0 273 283 0 53 chr1 2759561 2759656 -279434008 - MIR SINE MIR -62 146 60 197 340 0 0 chr1 2761796 2761846 -279431818 + L2 LINE L2 3223 3272 0 295 356 8 8 chr1 2761948 2762066 -279431598 + (CACG)n Simple_repeat Simple_repeat 4 121 0 334 279 6 57 chr1 2765067 2765225 -279428439 + (CGTG)n Simple_repeat Simple_repeat 2 151 0 668 257 125 64 chr1 2766568 2766976 -279426688 - MLT1C LTR MaLR -26 441 9 227 306 7 0 chr1 2767833 2767980 -279425684 + (CAGC)n Simple_repeat Simple_repeat 4 151 0 236 242 16 0 chr1 2768401 2768463 -279425201 + G-rich Low_complexity Low_complexity 3 65 0 630 325 59 6 chr1 2769797 2770117 -279423547 - MLT1E LTR MaLR -164 429 93 690 106 35 7 chr1 2771353 2771495 -279422169 + CT-rich Low_complexity Low_complexity 1 146 0 1070 296 41 11 chr1 2771495 2771937 -279421727 - L1MC3 LINE L1 -727 7058 6604 282 203 0 14 chr1 2772631 2772700 -279420964 - L1MD3 LINE L1 -385 7610 7543 * 287 207 11 35 chr1 2772697 2772784 -279420880 + L1MD3 LINE L1 7911 7995 0 231 261 0 0 chr1 2774002 2774048 -279419616 + polypurine Low_complexity Low_complexity 3 48 0 1541 165 83 0 chr1 2777092 2777358 -279416306 - AluJo SINE Alu -21 291 4 1149 235 74 6 chr1 2777405 2777728 -279415936 + L1ME2 LINE L1 5451 5795 -371 940 255 18 24 chr1 2778892 2779221 -279414443 + L1ME2 LINE L1 5785 6111 -53 1909 206 18 8 chr1 2779230 2779628 -279414036 - L1MB3 LINE L1 -1 6182 5781 888 189 65 9 chr1 2779633 2779850 -279413814 - Tigger7 DNA MER2_type -9 2482 2254 243 247 27 0 chr1 2779920 2779993 -279413671 - Tigger7 DNA MER2_type -295 2192 2118 3142 210 54 1 chr1 2780000 2780723 -279412941 - Tigger7 DNA MER2_type -1724 763 3 735 247 68 11 chr1 2780757 2781020 -279412644 - L1MB3 LINE L1 -402 5778 5501 320 149 32 75 chr1 2781899 2781993 -279411671 - L1M3 LINE L1 -619 5549 5460 308 333 0 18 chr1 2782416 2782587 -279411077 + G-rich Low_complexity Low_complexity 2 169 0 490 286 0 0 chr1 2783184 2783296 -279410368 + MER81 DNA DNA 3 114 0 413 307 132 21 chr1 2783650 2783839 -279409825 - MIR SINE MIR -7 255 46 2301 109 0 0 chr1 2784008 2784319 -279409345 - AluSx SINE Alu -1 311 1 1122 223 106 64 chr1 2785030 2785445 -279408219 + MLT1D LTR MaLR 5 445 -60 1997 92 44 4 chr1 2785445 2785754 -279407910 - AluY SINE Alu 0 320 1 1122 223 106 64 chr1 2785754 2785818 -279407846 + MLT1D LTR MaLR 445 505 0 307 303 0 13 chr1 2785919 2785995 -279407669 + L1ME LINE L1 1261 1335 -5195 232 252 69 88 chr1 2785996 2786155 -279407509 + L1ME LINE L1 1766 1921 -4619 * 1522 231 42 5 chr1 2786139 2786571 -279407093 + L1MB7 LINE L1 5565 6012 -172 1044 79 14 0 chr1 2786571 2786710 -279406954 - AluSp/q SINE Alu -17 296 156 567 179 62 0 chr1 2786717 2786862 -279406802 + L1MB7 LINE L1 6031 6184 0 441 251 44 98 chr1 2786862 2787065 -279406599 + L1ME LINE L1 1954 2145 -4576 2298 66 0 3 chr1 2787183 2787470 -279406194 + AluY SINE Alu 1 286 -25 574 275 39 14 chr1 2787486 2787693 -279405971 + LTR40b LTR ERVL 154 365 -97 592 246 94 70 chr1 2787709 2788355 -279405309 + L1ME LINE L1 2284 2910 -3630 524 279 56 45 chr1 2788378 2788611 -279405053 + L1ME LINE L1 2802 3042 -3498 1380 269 22 11 chr1 2788611 2788972 -279404692 - MLT1A1 LTR MaLR 0 365 1 524 279 56 45 chr1 2788972 2789093 -279404571 + L1ME LINE L1 3042 3160 -3380 330 253 0 0 chr1 2789093 2789172 -279404492 - MER96 DNA MER1_type? 0 175 97 918 292 45 14 chr1 2789216 2789634 -279404030 + L1ME LINE L1 4301 4731 -1809 393 118 0 128 chr1 2789637 2789739 -279403925 - LTR52 LTR ERVL 0 421 333 528 167 0 0 chr1 2789740 2789884 -279403780 + (CA)n Simple_repeat Simple_repeat 1 144 0 863 260 17 51 chr1 2789886 2790236 -279403428 - LTR52 LTR ERVL -80 341 4 1612 147 44 34 chr1 2790297 2790832 -279402832 + MER51A LTR ERV1 1 622 -12 902 301 135 26 chr1 2790853 2791137 -279402527 + L1ME LINE L1 4768 5020 -1520 2232 125 0 0 chr1 2791137 2791448 -279402216 + AluSx SINE Alu 1 311 -1 902 301 135 26 chr1 2791448 2791813 -279401851 + L1ME LINE L1 5020 5488 -1052 1276 305 52 45 chr1 2791827 2792054 -279401610 + L1ME LINE L1 5573 5797 -767 2228 100 3 10 chr1 2792054 2792363 -279401301 + AluSg SINE Alu 1 307 -3 1276 305 52 45 chr1 2792363 2792941 -279400723 + L1ME LINE L1 5797 6389 -175 3391 141 11 19 chr1 2793059 2793590 -279400074 + MER1A DNA MER1_type 1 527 0 180 0 0 0 chr1 2794428 2794448 -279399216 + (A)n Simple_repeat Simple_repeat 1 20 0 295 242 40 0 chr1 2796010 2796109 -279397555 + MER82 DNA MER2_type 338 440 -213 251 296 37 0 chr1 2796148 2796229 -279397435 + MER82 DNA MER2_type 570 653 0 234 48 0 95 chr1 2796229 2796271 -279397393 + L1MB7 LINE L1 6099 6136 -48 1006 226 169 10 chr1 2798247 2798561 -279395103 - MLT1A1 LTR MaLR -1 364 1 343 229 74 16 chr1 2798632 2798754 -279394910 - MER117 DNA MER1_type -34 163 35 193 344 16 0 chr1 2798902 2798966 -279394698 + L2 LINE L2 3195 3259 -13 23 0 0 0 chr1 2799831 2799854 -279393810 + GC_rich Low_complexity Low_complexity 1 23 0 430 248 26 0 chr1 2800118 2800231 -279393433 - MER3 DNA MER1_type -25 184 69 3791 98 4 6 chr1 2802268 2802780 -279390884 + MER9 LTR ERVK 1 511 0 347 214 30 15 chr1 2802858 2802989 -279390675 + CT-rich Low_complexity Low_complexity 2 134 0 673 277 33 5 chr1 2803211 2803395 -279390269 - MER53 DNA DNA 0 189 1 843 222 111 0 chr1 2804700 2804961 -279388703 + MLT1B LTR MaLR 94 383 -7 453 19 0 0 chr1 2805766 2805820 -279387844 + (CA)n Simple_repeat Simple_repeat 2 55 0 1614 190 169 5 chr1 2805945 2806313 -279387351 + MSTA LTR MaLR 1 428 0 265 214 18 0 chr1 2806548 2806604 -279387060 + MLT1D LTR MaLR 1 57 -448 645 252 66 34 chr1 2806612 2806993 -279386671 - MLT2B1 LTR ERVL -1 413 2 1333 198 88 35 chr1 2806996 2807396 -279386268 + MLT1D LTR MaLR 77 497 -8 320 295 29 22 chr1 2807397 2807536 -279386128 - L1ME LINE L1 -293 5828 5689 416 300 6 6 chr1 2810863 2811408 -279382256 + (TG)n Simple_repeat Simple_repeat 1 545 0 285 315 0 0 chr1 2811448 2811521 -279382143 + MIR SINE MIR 76 148 -114 507 164 214 0 chr1 2811521 2811661 -279382003 - MER69A DNA AcHobo -3 174 5 349 372 0 16 chr1 2811902 2812085 -279381579 + (CA)n Simple_repeat Simple_repeat 1 180 0 3277 127 45 0 chr1 2813246 2813735 -279379929 - MER75 DNA T2_type -3 511 1 340 287 110 27 chr1 2813785 2814218 -279379446 + MLT1H LTR MaLR 31 540 -2 1542 178 4 11 chr1 2814218 2814487 -279379177 - AluJb SINE Alu -45 267 1 1873 145 7 10 chr1 2815241 2815537 -279378127 + AluJb SINE Alu 1 295 -17 4385 131 101 47 chr1 2816219 2816999 -279376665 - LTR12 LTR ERV1 0 826 5 2272 171 48 34 chr1 2817026 2817609 -279376055 - pTR5 LTR ERV1 -1111 1327 737 1325 240 110 2 chr1 2817813 2818222 -279375442 - MLT1D LTR MaLR -52 453 1 783 124 91 0 chr1 2818471 2818592 -279375072 - FLAM_C SINE Alu -1 132 1 23 54 0 0 chr1 2818592 2818629 -279375035 + AT_rich Low_complexity Low_complexity 1 37 0 226 259 73 134 chr1 2819402 2819649 -279374015 - L2 LINE L2 -11 3261 3030 202 306 92 0 chr1 2822606 2822704 -279370960 - L2 LINE L2 -30 3242 3136 209 185 37 0 chr1 2822821 2822875 -279370789 - L2 LINE L2 -372 2942 2887 * 227 322 63 28 chr1 2822867 2823010 -279370654 + MIR SINE MIR 37 184 -78 867 220 258 0 chr1 2823164 2823501 -279370163 + MER31B LTR ERV1 43 466 0 206 241 0 19 chr1 2824313 2824367 -279369297 + CT-rich Low_complexity Low_complexity 1 53 0 337 306 133 31 chr1 2830917 2831143 -279362521 - L2 LINE L2 -344 2970 2702 2244 106 0 0 chr1 2831143 2831436 -279362228 - AluSq SINE Alu -19 294 2 337 306 133 31 chr1 2831436 2831526 -279362138 - L2 LINE L2 -612 2702 2622 299 317 0 0 chr1 2831526 2831706 -279361958 + GA-rich Low_complexity Low_complexity 1 180 0 * 336 300 0 0 chr1 2831595 2831775 -279361889 + (GCTG)n Simple_repeat Simple_repeat 1 180 0 362 289 0 0 chr1 2831794 2831967 -279361697 + (GCTG)n Simple_repeat Simple_repeat 1 173 0 338 321 0 0 chr1 2831890 2832236 -279361428 + (TGGG)n Simple_repeat Simple_repeat 1 346 0 * 295 328 0 0 chr1 2832218 2832392 -279361272 + (GCTG)n Simple_repeat Simple_repeat 4 177 0 * 201 353 82 0 chr1 2832876 2832961 -279360703 + MIR SINE MIR 155 246 -16 803 265 95 33 chr1 2834266 2834602 -279359062 - MLT1A1 LTR MaLR -8 357 1 657 261 96 58 chr1 2834831 2835250 -279358414 + MLT1H LTR MaLR 14 490 -59 1349 136 10 5 chr1 2835252 2835458 -279358206 - AluJb SINE Alu -19 293 87 313 185 0 0 chr1 2835458 2835523 -279358141 + MLT1H LTR MaLR 485 549 0 687 312 44 16 chr1 2835620 2836050 -279357614 + L1ME LINE L1 3851 4292 -1854 1328 208 14 41 chr1 2836214 2836508 -279357156 + AluJb SINE Alu 10 295 -17 211 260 0 19 chr1 2836542 2836646 -279357018 + GA-rich Low_complexity Low_complexity 3 104 0 237 306 0 10 chr1 2836674 2836772 -279356892 + L1ME LINE L1 4741 4837 -1309 465 252 67 20 chr1 2836908 2837336 -279356328 + L1ME LINE L1 5026 5481 -689 237 155 14 84 chr1 2837338 2837409 -279356255 + L1P5 LINE L1 5397 5462 -692 981 285 138 42 chr1 2837487 2838243 -279355421 + L1ME LINE L1 51 918 -5152 1506 172 69 0 chr1 2838243 2838505 -279355159 + AluJb SINE Alu 31 310 -2 981 285 138 42 chr1 2838505 2838696 -279354968 + L1ME LINE L1 918 1089 -4981 330 281 94 25 chr1 2839439 2839599 -279354065 - MIR SINE MIR -28 234 64 1822 113 58 0 chr1 2841393 2841695 -279351969 - AluSx SINE Alu 0 318 1 540 92 92 0 chr1 2842061 2842224 -279351440 + (CA)n Simple_repeat Simple_repeat 1 178 0 185 370 151 0 chr1 2845354 2845473 -279348191 + MIR SINE MIR 118 254 -8 247 292 0 0 chr1 2845485 2845574 -279348090 + (CAGCC)n Simple_repeat Simple_repeat 1 89 0 1894 216 50 34 chr1 2845646 2846478 -279347186 + LTR13 LTR ERVK 1 901 -106 348 250 0 0 chr1 2847695 2847767 -279345897 + MIR SINE MIR 78 149 -59 7002 182 43 118 chr1 2847770 2849221 -279344443 + L1MB3 LINE L1 2878 4436 -1710 712 189 57 46 chr1 2849221 2849396 -279344268 + MER8 DNA MER2_type 1 177 -62 7002 182 43 118 chr1 2849396 2849429 -279344235 + L1MB3 LINE L1 4436 4470 -1676 341 186 43 0 chr1 2849429 2849499 -279344165 - Tigger2 DNA MER2_type -2645 73 1 7002 182 43 118 chr1 2849499 2850409 -279343255 + L1MB3 LINE L1 4470 5319 -827 1367 94 5 5 chr1 2850409 2850601 -279343063 - AluSg/x SINE Alu -24 288 97 4203 171 9 28 chr1 2850608 2850906 -279342758 + L1MB3 LINE L1 5317 5619 -564 2265 95 0 3 chr1 2850906 2851212 -279342452 + AluSg SINE Alu 1 305 -5 4203 171 9 28 chr1 2851212 2851797 -279341867 + L1MB3 LINE L1 5619 6183 0 353 193 0 0 chr1 3053056 3053113 -279140551 - AluJ/FLAM SINE Alu -245 57 1 1030 230 111 51 chr1 3053830 3054261 -279139403 - MLT1C LTR MaLR 0 467 11 837 176 20 0 chr1 3055124 3055272 -279138392 + FRAM SINE Alu 4 154 -22 1315 152 94 18 chr1 3056739 3057016 -279136648 - MER7A DNA MER2_type 0 346 51 1540 152 141 0 chr1 3057404 3057667 -279135997 + AluJb SINE Alu 1 300 -12 2610 56 0 0 chr1 3058386 3058688 -279134976 - AluY SINE Alu -9 302 1 1541 130 0 0 chr1 3058886 3059114 -279134550 + AluSg/x SINE Alu 81 310 0 858 236 86 17 chr1 3059605 3059906 -279133758 + MER33 DNA MER1_type 1 322 -2 210 236 0 0 chr1 3060014 3060069 -279133595 + CT-rich Low_complexity Low_complexity 1 55 0 25 51 0 0 chr1 3060376 3060415 -279133249 + AT_rich Low_complexity Low_complexity 1 39 0 2171 96 30 23 chr1 3060700 3061001 -279132663 - AluSp SINE Alu -8 305 3 33 43 0 0 chr1 3061049 3061096 -279132568 + AT_rich Low_complexity Low_complexity 1 47 0 1447 133 13 4 chr1 3061175 3061400 -279132264 + AluJb SINE Alu 73 299 -13 1722 127 0 4 chr1 3062094 3062330 -279131334 - AluSq SINE Alu 0 313 79 784 132 0 150 chr1 3062331 3062498 -279131166 - AluSc SINE Alu -35 274 133 2417 79 0 3 chr1 3062763 3063054 -279130610 + AluSg SINE Alu 2 291 -19 1845 145 91 0 chr1 3063171 3063447 -279130217 + AluJo SINE Alu 1 301 -11 2080 144 0 0 chr1 3063737 3064036 -279129628 + AluSx SINE Alu 1 299 -13 2495 37 27 7 chr1 3064445 3064743 -279128921 + AluY SINE Alu 1 304 -7 2070 131 17 7 chr1 3065985 3066283 -279127381 + AluSx SINE Alu 1 301 -11 2270 121 0 3 chr1 3066287 3066594 -279127070 + AluSx SINE Alu 1 306 -6 266 243 196 0 chr1 3066826 3066933 -279126731 + MIR SINE MIR 15 142 -120 2069 128 7 0 chr1 3068374 3068664 -279125000 + AluJo SINE Alu 1 292 -20 599 268 141 19 chr1 3068665 3068878 -279124786 + MIR SINE MIR 21 259 -3 225 0 0 0 chr1 3070329 3070354 -279123310 + (A)n Simple_repeat Simple_repeat 1 25 0 2304 93 3 17 chr1 3070499 3070801 -279122863 - AluY SINE Alu -13 298 1 729 213 128 0 chr1 3070801 3070942 -279122722 - FRAM SINE Alu -5 161 3 2190 96 21 10 chr1 3071149 3071440 -279122224 + AluSg SINE Alu 1 294 -16 24 0 0 0 chr1 3073136 3073160 -279120504 + AT_rich Low_complexity Low_complexity 1 24 0 2276 98 14 0 chr1 3073487 3073782 -279119882 + AluSc SINE Alu 1 299 -10 1921 156 14 0 chr1 3073786 3074075 -279119589 + AluJb SINE Alu 1 293 -19 234 250 16 16 chr1 3075658 3075722 -279117942 + L2 LINE L2 3207 3270 -2 2452 67 0 13 chr1 3075865 3076178 -279117486 - AluY SINE Alu -2 309 1 712 156 16 8 chr1 3076224 3076352 -279117312 - MER46A DNA MER2_type 0 236 108 354 316 33 0 chr1 3078000 3078152 -279115512 + L1MB1 LINE L1 6005 6161 -7 357 211 87 0 chr1 3078722 3078826 -279114838 - L2 LINE L2 -18 3295 3183 572 190 83 0 chr1 3078982 3079103 -279114561 - L1MB3 LINE L1 -1 6182 6052 1785 179 13 16 chr1 3079150 3079457 -279114207 + AluJb SINE Alu 1 306 -6 1562 121 8 32 chr1 3079552 3079801 -279113863 - AluJb SINE Alu -64 248 6 21 82 0 0 chr1 3080177 3080226 -279113438 + AT_rich Low_complexity Low_complexity 1 49 0 236 274 0 16 chr1 3081158 3081220 -279112444 - L1ME3A LINE L1 -199 5971 5911 285 329 121 9 chr1 3081240 3081471 -279112193 - L1ME3A LINE L1 -358 5812 5556 253 342 40 13 chr1 3082012 3082237 -279111427 - L1ME3A LINE L1 -832 5314 5084 451 111 0 141 chr1 3082247 3082286 -279111378 - MSTA LTR MaLR 0 428 410 2315 77 7 0 chr1 3082286 3082573 -279111091 + AluSp SINE Alu 1 289 -24 451 111 0 141 chr1 3082573 3082632 -279111032 - MSTA LTR MaLR -18 410 344 234 116 0 0 chr1 3084410 3084453 -279109211 + (TCTG)n Simple_repeat Simple_repeat 2 44 0 265 296 48 0 chr1 3084525 3084650 -279109014 - L1MC5 LINE L1 -106 7855 7725 1175 276 95 49 chr1 3084790 3085645 -279108019 - L1MC5 LINE L1 -446 7515 6615 346 280 62 52 chr1 3086655 3086848 -279106816 - MLT1E1 LTR MaLR -163 491 297 247 258 82 44 chr1 3087037 3087196 -279106468 - L1ME LINE L1 -5124 946 782 844 226 118 19 chr1 3087196 3087519 -279106145 - L1MB7 LINE L1 -9 6175 5821 251 190 35 0 chr1 3087530 3087588 -279106076 - L1ME LINE L1 -5297 773 714 260 356 56 23 chr1 3087613 3087829 -279105835 + L1M4 LINE L1 4943 5165 -981 398 136 99 12 chr1 3087835 3087916 -279105748 + L1MB2 LINE L1 6028 6115 -56 288 216 58 90 chr1 3088012 3088231 -279105433 - L2 LINE L2 -535 2779 2499 252 264 169 41 chr1 3088638 3088952 -279104712 - MLT1H LTR MaLR -111 438 85 2089 102 3 39 chr1 3089317 3089622 -279104042 - AluSx SINE Alu -18 294 1 1902 127 57 0 chr1 3090587 3090870 -279102794 + AluSx SINE Alu 1 299 -13 1184 125 6 0 chr1 3092703 3092871 -279100793 - AluSg/x SINE Alu -24 288 120 333 216 0 0 chr1 3092971 3093059 -279100605 + G-rich Low_complexity Low_complexity 1 88 0 209 159 45 0 chr1 3093085 3093129 -279100535 + G-rich Low_complexity Low_complexity 6 51 0 264 284 0 0 chr1 3093143 3093238 -279100426 + G-rich Low_complexity Low_complexity 1 95 0 823 105 0 9 chr1 3093325 3093439 -279100225 + AluSg/x SINE Alu 182 294 -16 183 156 0 0 chr1 3093655 3093687 -279099977 + (TA)n Simple_repeat Simple_repeat 2 33 0 2395 74 0 49 chr1 3093812 3094136 -279099528 - AluSg SINE Alu -2 308 1 21 36 0 0 chr1 3094334 3094362 -279099302 + AT_rich Low_complexity Low_complexity 1 28 0 232 36 0 0 chr1 3095446 3095474 -279098190 + MIR SINE MIR 116 143 -119 2477 84 0 0 chr1 3095951 3096248 -279097416 - AluSx SINE Alu -15 297 1 1273 161 0 28 chr1 3096254 3096472 -279097192 - AluJo SINE Alu -13 299 88 3075 100 16 9 chr1 3096563 3097012 -279096652 - LTR3b LTR ERVK -48 452 1 348 210 180 0 chr1 3097068 3097168 -279096496 + MSTC LTR MaLR 11 128 -268 1830 159 10 0 chr1 3097191 3097481 -279096183 + AluJb SINE Alu 1 293 -19 2502 65 3 0 chr1 3097484 3097776 -279095888 + AluSp SINE Alu 1 293 -20 466 189 90 7 chr1 3097804 3097962 -279095702 + MSTC LTR MaLR 226 428 0 1829 167 7 3 chr1 3097972 3098266 -279095398 - AluJb SINE Alu -13 299 5 2129 133 3 0 chr1 3098297 3098590 -279095074 + AluSx SINE Alu 1 294 -18 278 153 125 0 chr1 3098670 3098742 -279094922 - L1MEc LINE L1 -6048 348 268 1625 126 168 3 chr1 3098769 3099103 -279094561 + MSTA LTR MaLR 1 389 -39 2332 64 0 37 chr1 3099103 3099436 -279094228 + AluY SINE Alu 1 322 0 1954 153 142 14 chr1 3099451 3099942 -279093722 - LOR1-int LTR ERV1 -3269 3936 1515 8221 60 14 5 chr1 3099942 3100940 -279092724 + LTR13 LTR ERVK 1 1007 0 1175 146 19 5 chr1 3100940 3101146 -279092518 + HERVK13 LTR ERVK 1 209 -7907 705 228 213 68 chr1 3101137 3101654 -279092010 + HERVK13 LTR ERVK 727 1318 -6798 * 421 283 12 58 chr1 3101641 3101814 -279091850 + HERVK13 LTR ERVK 3965 4129 -3987 * 3085 244 3 3 chr1 3101805 3103214 -279090450 + HERVK13 LTR ERVK 4572 6092 -2024 * 6199 217 3 24 chr1 3103203 3103437 -279090227 + HERVK13 LTR ERVK 6733 6970 -1146 2404 74 3 0 chr1 3103437 3103746 -279089918 + AluY SINE Alu 1 310 -1 6199 217 3 24 chr1 3103746 3104924 -279088740 + HERVK13 LTR ERVK 6970 8116 0 3702 40 4 0 chr1 3104924 3105401 -279088263 + LTR13 LTR ERVK 1 479 -528 1009 248 4 18 chr1 3105404 3105678 -279087986 - HERVK13 LTR ERVK -2972 5144 4875 1995 119 9 3 chr1 3105680 3106007 -279087657 + THE1A LTR MaLR 27 355 0 1873 129 5 18 chr1 3106007 3106438 -279087226 - LTR38-int LTR ERV1 -1097 689 364 * 2281 173 70 0 chr1 3106424 3106868 -279086796 - LTR38-int LTR ERV1 -1310 476 2 1727 152 29 79 chr1 3106869 3107289 -279086375 - LTR38 LTR ERV1 0 556 158 2176 105 20 0 chr1 3107291 3107597 -279086067 - AluSx SINE Alu 0 312 1 1994 140 11 91 chr1 3107643 3107877 -279085787 - MER4D LTR ERV1 -468 435 184 2219 115 0 0 chr1 3107877 3108182 -279085482 - AluSx SINE Alu -7 305 1 1994 140 11 91 chr1 3108182 3108393 -279085271 - MER4D LTR ERV1 -719 184 26 2382 71 0 6 chr1 3108393 3108704 -279084960 - AluY SINE Alu -2 309 1 1994 140 11 91 chr1 3108704 3108721 -279084943 - MER4D LTR ERV1 -877 26 9 1742 171 4 0 chr1 3108722 3109028 -279084636 + AluJb SINE Alu 1 307 0 1827 126 16 55 chr1 3109037 3109347 -279084317 + AluSx SINE Alu 1 298 -14 2157 99 3 48 chr1 3109454 3109829 -279083835 + MER4A LTR ERV1 1 358 -306 1655 168 7 7 chr1 3109870 3110180 -279083484 + MER4A LTR ERV1 355 664 0 183 302 95 0 chr1 3111442 3111505 -279082159 - MIR SINE MIR -62 200 132 240 297 33 33 chr1 3111571 3111662 -279082002 + L2 LINE L2 3181 3271 -1 2312 85 3 0 chr1 3111794 3112099 -279081565 - AluSx SINE Alu -6 306 1 1736 107 85 0 chr1 3112232 3112503 -279081161 + AluJb SINE Alu 1 294 -18 3875 146 35 50 chr1 3112532 3112651 -279081013 - LTR8A LTR ERV1 0 727 608 2236 101 3 0 chr1 3112651 3112957 -279080707 - AluY SINE Alu -4 307 1 3875 146 35 50 chr1 3112957 3113479 -279080185 - LTR8A LTR ERV1 -119 608 96 1897 112 69 0 chr1 3113479 3113755 -279079909 + AluSp SINE Alu 1 295 -18 3875 146 35 50 chr1 3113755 3113850 -279079814 - LTR8A LTR ERV1 -631 96 1 2215 78 0 4 chr1 3114126 3114407 -279079257 + AluSc SINE Alu 14 293 -16 2053 132 0 0 chr1 3114818 3115107 -279078557 + AluJb SINE Alu 1 289 -23 2298 96 3 0 chr1 3115116 3115419 -279078245 + AluSp SINE Alu 1 304 -9 244 274 12 12 chr1 3119768 3119852 -279073812 + GA-rich Low_complexity Low_complexity 1 84 0 232 229 71 14 chr1 3120143 3120213 -279073451 + MIR SINE MIR 110 183 -79 1834 154 10 7 chr1 3120361 3120654 -279073010 - AluSx SINE Alu -18 294 1 2159 117 0 0 chr1 3120705 3121003 -279072661 + AluSx SINE Alu 6 303 -9 2184 96 14 0 chr1 3121863 3122156 -279071508 - AluSp SINE Alu -16 297 1 2241 113 0 0 chr1 3123432 3123733 -279069931 - AluSq SINE Alu -12 301 1 1776 174 19 6 chr1 3123739 3124055 -279069609 - 7SLRNA srpRNA srpRNA 0 320 1 1563 101 5 5 chr1 3124276 3124493 -279069171 + AluSp SINE Alu 2 218 -95 1136 139 0 6 chr1 3124493 3124665 -279068999 + AluSp SINE Alu 143 313 0 1924 141 3 3 chr1 3124888 3125172 -279068492 - AluJo SINE Alu -28 284 1 220 204 19 37 chr1 3125634 3125688 -279067976 - L3 LINE CR1 -319 1258 1206 2040 110 17 0 chr1 3126047 3126339 -279067325 - AluSc SINE Alu -7 302 6 300 85 64 0 chr1 3126339 3126386 -279067278 - Alu SINE Alu -250 50 1 274 306 12 0 chr1 3126611 3126696 -279066968 + MER7A DNA MER2_type 1 84 -262 189 107 0 0 chr1 3128234 3128262 -279065402 + (GGGA)n Simple_repeat Simple_repeat 1 28 0 252 328 46 27 chr1 3131836 3131962 -279061702 - MIR SINE MIR -46 162 33 203 253 0 40 chr1 3134284 3134359 -279059305 + G-rich Low_complexity Low_complexity 6 77 0 191 122 0 24 chr1 3134461 3134502 -279059162 + (CGGGG)n Simple_repeat Simple_repeat 5 44 0 640 236 10 45 chr1 3135778 3135977 -279057687 + MER63A DNA MER1_type 1 192 -18 236 254 16 16 chr1 3136190 3136253 -279057411 + CT-rich Low_complexity Low_complexity 3 65 0 183 339 57 73 chr1 3137371 3137495 -279056169 - MIR SINE MIR -113 149 28 241 231 62 15 chr1 3138128 3138193 -279055471 - L2 LINE L2 -1 3312 3245 1816 162 7 13 chr1 3138650 3138958 -279054706 + AluJb SINE Alu 1 306 -6 277 341 41 32 chr1 3139125 3139248 -279054416 + MIR SINE MIR 124 247 -15 2294 103 0 0 chr1 3139908 3140209 -279053455 + AluSc SINE Alu 1 301 -8 719 288 126 3 chr1 3140542 3140868 -279052796 + HAL1 LINE L1 1 366 -2141 1717 195 13 3 chr1 3140881 3141189 -279052475 + AluJb SINE Alu 1 311 -1 1333 249 167 34 chr1 3141286 3141994 -279051670 + HAL1 LINE L1 856 1683 -824 2175 117 3 0 chr1 3141994 3142293 -279051371 - AluSq SINE Alu -13 300 1 1333 249 167 34 chr1 3142293 3142382 -279051282 + HAL1 LINE L1 1683 1759 -748 657 248 109 29 chr1 3142465 3142812 -279050852 + HAL1 LINE L1 2133 2507 0 300 286 0 0 chr1 3143711 3143795 -279049869 + CT-rich Low_complexity Low_complexity 2 85 0 212 149 21 0 chr1 3145031 3145078 -279048586 + C-rich Low_complexity Low_complexity 3 50 0 235 289 67 22 chr1 3145243 3145378 -279048286 - MIR3 SINE MIR -61 147 7 489 269 0 8 chr1 3146215 3146361 -279047303 + L1MDa LINE L1 1904 2073 -4493 838 269 46 9 chr1 3146362 3146686 -279046978 + L1MDa LINE L1 3222 3557 -2983 349 139 119 40 chr1 3146723 3146824 -279046840 + L1MC4 LINE L1 7918 8026 -16 474 306 77 32 chr1 3146909 3147157 -279046507 + MLT1K LTR MaLR 264 522 -66 228 245 0 0 chr1 3147225 3147274 -279046390 - L1ME LINE L1 -477 5644 5596 398 323 29 32 chr1 3147471 3147815 -279045849 + L1MDa LINE L1 3543 3885 -2655 2041 116 0 27 chr1 3147817 3148118 -279045546 - AluSg SINE Alu -17 293 1 1735 164 6 25 chr1 3148150 3148468 -279045196 + AluJb SINE Alu 1 312 0 531 155 0 31 chr1 3148483 3148561 -279045103 + AluJ/FRAM SINE Alu 216 292 -20 2150 102 7 0 chr1 3148561 3148855 -279044809 + AluSc SINE Alu 1 296 -13 531 155 0 31 chr1 3148855 3148873 -279044791 + AluJ/FRAM SINE Alu 292 309 -3 303 274 19 0 chr1 3148884 3148990 -279044674 + L1MDa LINE L1 3906 4013 -2527 1831 127 3 47 chr1 3148993 3149104 -279044560 + AluJb SINE Alu 2 116 -196 2336 73 3 3 chr1 3149104 3149406 -279044258 - AluY SINE Alu -9 302 1 1831 127 3 47 chr1 3149406 3149594 -279044070 + AluJb SINE Alu 116 288 -24 211 220 0 0 chr1 3149607 3149657 -279044007 + A-rich Low_complexity Low_complexity 1 50 0 257 289 0 10 chr1 3149681 3149785 -279043879 + L1MDa LINE L1 4025 4127 -2413 181 280 113 48 chr1 3150565 3150682 -279042982 + MIR3 SINE MIR 1 134 -74 2175 101 3 10 chr1 3150682 3150988 -279042676 - AluSg1 SINE Alu -5 304 1 181 280 113 48 chr1 3150988 3151038 -279042626 + MIR3 SINE MIR 134 179 -29 184 343 45 0 chr1 3152368 3152435 -279041229 + MIR3 SINE MIR 112 181 -27 2241 83 9 46 chr1 3153411 3153736 -279039928 + AluSp SINE Alu 1 313 0 256 194 54 75 chr1 3154668 3154761 -279038903 - LTR45B LTR ERV1 -1 488 398 1267 177 165 11 chr1 3154770 3155064 -279038600 + AluSg SINE Alu 1 334 0 2389 58 0 0 chr1 3155146 3155437 -279038227 + AluY SINE Alu 1 291 -20 3882 190 31 52 chr1 3155656 3156646 -279037018 - LTR5 LTR ERVK 0 969 1 1475 199 39 77 chr1 3156770 3156864 -279036800 + MER7A DNA MER2_type 1 97 -2941 2384 79 3 0 chr1 3156864 3157167 -279036497 + AluY SINE Alu 1 304 -7 1475 199 39 77 chr1 3157167 3157434 -279036230 + MER7A DNA MER2_type 97 346 0 3872 181 79 51 chr1 3157900 3158828 -279034836 + LTR13 LTR ERVK 1 954 0 1139 106 0 0 chr1 3159130 3159290 -279034374 + AluSg/x SINE Alu 153 312 0 22 0 0 0 chr1 3159701 3159723 -279033941 + GC_rich Low_complexity Low_complexity 1 22 0 614 347 157 2 chr1 3161447 3161862 -279031802 - L2 LINE L2 -1 3312 2834 221 259 193 7 chr1 3161924 3162059 -279031605 - L2 LINE L2 -637 2677 2518 221 0 0 33 chr1 3162517 3162547 -279031117 + (TTTA)n Simple_repeat Simple_repeat 4 32 0 2096 73 18 0 chr1 3162589 3162863 -279030801 - AluY SINE Alu -32 279 1 1942 122 7 26 chr1 3163113 3163417 -279030247 - AluJb SINE Alu -14 298 1 278 309 112 45 chr1 3164467 3164690 -279028974 - L2 LINE L2 -2 3270 3033 3072 114 109 80 chr1 3165348 3165964 -279027700 - MER51A LTR ERV1 0 634 1 1868 107 52 10 chr1 3166312 3166602 -279027062 + AluSx SINE Alu 1 302 -10 2320 91 0 0 chr1 3169171 3169469 -279024195 - AluSg SINE Alu -12 298 1 283 324 56 21 chr1 3171826 3171968 -279021696 + MIR SINE MIR 3 149 -113 194 250 31 16 chr1 3175059 3175123 -279018541 + MIR SINE MIR 79 143 -119 262 299 86 0 chr1 3176548 3176665 -279016999 - MIR SINE MIR -72 190 64 182 325 51 26 chr1 3177351 3177468 -279016196 - L2 LINE L2 -144 3128 3009 1574 153 29 70 chr1 3178031 3178345 -279015319 - AluJo SINE Alu -2 310 10 830 147 10 28 chr1 3180108 3180651 -279013013 + (TCCA)n Simple_repeat Simple_repeat 1 532 0 789 137 6 27 chr1 3180671 3180854 -279012810 + (TCCA)n Simple_repeat Simple_repeat 1 179 0 738 149 7 18 chr1 3180869 3181148 -279012516 + (TCCA)n Simple_repeat Simple_repeat 1 275 0 620 164 11 27 chr1 3181159 3181342 -279012322 + (TCCA)n Simple_repeat Simple_repeat 1 180 0 753 185 4 15 chr1 3181368 3181639 -279012025 + (TCCA)n Simple_repeat Simple_repeat 1 268 0 253 109 36 18 chr1 3181640 3181695 -279011969 + (CCCA)n Simple_repeat Simple_repeat 1 56 0 2230 101 0 0 chr1 3182012 3182310 -279011354 - AluSx SINE Alu -14 298 1 400 306 38 48 chr1 3183863 3184386 -279009278 - TAR1 Satellite telomeric -570 1541 1024 206 385 19 0 chr1 3186093 3186197 -279007467 - MIR3 SINE MIR -7 201 96 1962 105 30 23 chr1 3186831 3187110 -279006554 + AluSx SINE Alu 1 284 -28 414 0 0 0 chr1 3187110 3187156 -279006508 + (CA)n Simple_repeat Simple_repeat 1 46 0 1962 105 30 23 chr1 3187156 3187180 -279006484 + AluSx SINE Alu 284 306 -6 189 0 0 0 chr1 3188815 3188836 -279004828 + (CCCCG)n Simple_repeat Simple_repeat 5 25 0 345 275 101 0 chr1 3194178 3194316 -278999348 + MIR SINE MIR 20 171 -91 306 106 0 0 chr1 3195178 3195225 -278998439 + (CA)n Simple_repeat Simple_repeat 1 47 0 186 349 177 16 chr1 3195812 3196004 -278997660 - MIR SINE MIR -6 256 34 325 333 8 8 chr1 3196195 3196321 -278997343 + (TG)n Simple_repeat Simple_repeat 1 126 0 401 343 129 5 chr1 3198417 3198618 -278995046 + MIR SINE MIR 2 227 -35 336 308 19 9 chr1 3200694 3200801 -278992863 - MIR SINE MIR -65 197 90 23 0 0 0 chr1 3200917 3200940 -278992724 + GC_rich Low_complexity Low_complexity 1 23 0 283 286 39 77 chr1 3201716 3201858 -278991806 + L1M4 LINE L1 5735 5871 -307 811 181 7 7 chr1 3201864 3202013 -278991651 + FRAM SINE Alu 19 167 -9 201 139 28 0 chr1 3202579 3202615 -278991049 + L2 LINE L2 3137 3173 -99 545 298 99 8 chr1 3202620 3202882 -278990782 + MER33 DNA MER1_type 13 298 -26 418 257 76 76 chr1 3205110 3205238 -278988426 + MIR SINE MIR 23 153 -109 2125 111 0 13 chr1 3205238 3205544 -278988120 + AluSx SINE Alu 1 302 -10 418 257 76 76 chr1 3205544 3205586 -278988078 + MIR SINE MIR 152 193 -69 2029 64 64 4 chr1 3206253 3206520 -278987144 - AluSx SINE Alu -17 295 13 236 234 32 53 chr1 3207238 3207332 -278986332 + C-rich Low_complexity Low_complexity 4 95 0 212 364 96 11 chr1 3209943 3210130 -278983534 - L2 LINE L2 -842 2472 2270 234 298 276 0 chr1 3211072 3211300 -278982364 + L2 LINE L2 2425 2715 -599 233 232 40 0 chr1 3212049 3212148 -278981516 - MSR1 Satellite Satellite -1 110 8 241 227 41 0 chr1 3212260 3212357 -278981307 - MSR1 Satellite Satellite -1 110 10 246 206 41 0 chr1 3212435 3212672 -278980992 - MSR1 Satellite Satellite -1 246 1 349 184 21 100 chr1 3212733 3212923 -278980741 + (CTGGGG)n Simple_repeat Simple_repeat 4 178 0 246 206 41 0 chr1 3212963 3213095 -278980569 - MSR1 Satellite Satellite -1 137 1 289 188 0 134 chr1 3213121 3213323 -278980341 + (CTGGGG)n Simple_repeat Simple_repeat 4 178 0 200 264 127 0 chr1 3213470 3213564 -278980100 - MIR SINE MIR -56 152 46 227 310 30 50 chr1 3213932 3214032 -278979632 + L2 LINE L2 3216 3313 0 189 225 34 0 chr1 3214913 3215002 -278978662 + (CA)n Simple_repeat Simple_repeat 1 92 0 219 317 10 10 chr1 3215029 3215130 -278978534 + (CA)n Simple_repeat Simple_repeat 1 101 0 276 120 0 0 chr1 3219333 3219383 -278974281 + (GGGGA)n Simple_repeat Simple_repeat 4 53 0 333 358 40 0 chr1 3220135 3220286 -278973378 - MIR SINE MIR -78 184 28 534 256 235 21 chr1 3223124 3223503 -278970161 + MLT1K LTR MaLR 19 478 -110 337 190 13 25 chr1 3223643 3223722 -278969942 + MLT1K LTR MaLR 452 529 -59 281 323 50 0 chr1 3226011 3226110 -278967554 - MIR SINE MIR -88 174 71 260 302 62 10 chr1 3226579 3226675 -278966989 - MIR3 SINE MIR -41 167 67 597 294 11 0 chr1 3226687 3226864 -278966800 + L1MB5 LINE L1 5698 5876 -298 372 337 97 42 chr1 3226943 3227631 -278966033 + L1M4c LINE L1 796 1493 -4891 253 318 121 15 chr1 3228165 3228297 -278965367 - MER5A DNA MER1_type 0 189 44 1666 178 0 35 chr1 3229042 3229356 -278964308 + AluJo SINE Alu 1 303 -9 408 232 126 0 chr1 3230032 3230183 -278963481 + MER20 DNA MER1_type 2 171 -48 254 260 82 48 chr1 3230283 3230429 -278963235 - MIR3 SINE MIR -55 153 3 333 340 0 38 chr1 3230585 3230770 -278962894 + C-rich Low_complexity Low_complexity 2 179 0 383 254 6 42 chr1 3230797 3230962 -278962702 + CT-rich Low_complexity Low_complexity 6 164 0 239 274 105 0 chr1 3233001 3233096 -278960568 - MIR SINE MIR -124 138 34 527 291 31 41 chr1 3233436 3233632 -278960032 + MIR SINE MIR 55 248 -14 216 307 160 40 chr1 3235285 3235435 -278958229 - MIR SINE MIR -34 228 61 208 250 111 28 chr1 3236143 3236215 -278957449 + L2 LINE L2 3232 3309 -4 2223 103 3 7 chr1 3236354 3236664 -278957000 - AluSx SINE Alu -3 309 1 198 319 43 11 chr1 3236840 3236934 -278956730 - MIR SINE MIR -103 159 63 313 374 9 9 chr1 3238338 3238445 -278955219 - L1MC5 LINE L1 -167 7794 7688 240 188 25 75 chr1 3238445 3238499 -278955165 + MER116 DNA Mariner 1 51 -29 288 0 0 0 chr1 3238499 3238531 -278955133 + (CA)n Simple_repeat Simple_repeat 2 33 0 240 188 25 75 chr1 3238531 3238556 -278955108 + MER116 DNA Mariner 51 76 -4 2273 94 0 7 chr1 3239270 3239578 -278954086 - AluSc SINE Alu -3 306 1 1069 196 78 156 chr1 3239641 3240181 -278953483 - MLT1D LTR MaLR -7 498 1 191 227 23 0 chr1 3240639 3240683 -278952981 - MIR SINE MIR -24 238 194 873 201 10 45 chr1 3240686 3240885 -278952779 + AluJo SINE Alu 91 282 -30 2033 97 50 13 chr1 3240893 3241192 -278952472 - AluSq SINE Alu -1 312 3 1109 161 0 0 chr1 3241212 3241404 -278952260 + AluSg/x SINE Alu 121 312 0 259 175 225 0 chr1 3243192 3243272 -278950392 + MER39 LTR ERV1 291 388 -319 2096 76 69 3 chr1 3243324 3243613 -278950051 - AluY SINE Alu -3 308 1 412 324 23 6 chr1 3243639 3243815 -278949849 + MER39 LTR ERV1 500 678 -29 188 246 77 31 chr1 3243917 3243982 -278949682 + MIR SINE MIR 86 153 -109 392 182 149 41 chr1 3244320 3244441 -278949223 + MER34C LTR ERV1 4 137 -448 266 250 93 9 chr1 3244659 3244767 -278948897 + LTR48 LTR ERV1 616 732 -55 1082 116 12 6 chr1 3244974 3245138 -278948526 - FRAM SINE Alu -16 160 1 355 231 58 49 chr1 3245143 3245321 -278948343 + L1MCa LINE L1 1898 6983 -1339 1738 157 0 4 chr1 3245352 3245620 -278948044 - AluJb SINE Alu -45 267 1 1095 242 57 75 chr1 3245624 3246409 -278947255 + MER34C-int LTR ERV1 2617 3387 -1549 * 4310 198 44 47 chr1 3246404 3247067 -278946597 + MER34C-int LTR ERV1 3558 4219 -717 1688 123 53 49 chr1 3247067 3247372 -278946292 + AluSx SINE Alu 1 306 0 4310 198 44 47 chr1 3247372 3247887 -278945777 + MER34C-int LTR ERV1 4219 4734 -202 425 155 0 0 chr1 3247972 3248042 -278945622 + MER34C LTR ERV1 3 72 -513 465 96 0 0 chr1 3248042 3248115 -278945549 + MER34C LTR ERV1 1 73 -512 * 472 72 0 0 chr1 3248082 3248151 -278945513 + MER34C LTR ERV1 5 73 -512 457 87 0 0 chr1 3248118 3248187 -278945477 + MER34C LTR ERV1 5 73 -512 * 442 116 0 0 chr1 3248154 3248222 -278945442 + MER34C LTR ERV1 5 72 -513 825 195 30 37 chr1 3248222 3248458 -278945206 + MER34C LTR ERV1 1 234 -351 232 250 23 45 chr1 3248695 3248783 -278944881 + LTR48 LTR ERV1 702 787 0 378 213 56 9 chr1 3249368 3249476 -278944188 - Charlie4a DNA MER1_type -3 505 393 1156 235 24 42 chr1 3249528 3249937 -278943727 + MLT1C LTR MaLR 60 461 -6 991 274 54 3 chr1 3249951 3250265 -278943399 - Charlie4a DNA MER1_type -149 359 30 657 302 19 0 chr1 3250407 3250612 -278943052 + MIR SINE MIR 52 260 -2 2446 47 7 0 chr1 3250854 3251151 -278942513 - AluY SINE Alu -12 299 1 2093 127 0 0 chr1 3251642 3251942 -278941722 - AluSx SINE Alu -12 300 1 625 281 89 13 chr1 3252398 3252633 -278941031 - MIR SINE MIR -6 256 4 2044 125 3 13 chr1 3252847 3253158 -278940506 - AluSx SINE Alu -4 308 1 226 246 16 41 chr1 3254484 3254606 -278939058 + (CGGG)n Simple_repeat Simple_repeat 4 122 0 210 176 0 0 chr1 3256535 3256586 -278937078 + (CATATA)n Simple_repeat Simple_repeat 4 54 0 575 176 61 14 chr1 3256609 3256757 -278936907 - MER53 DNA DNA -15 174 20 23 33 0 0 chr1 3257166 3257196 -278936468 + GC_rich Low_complexity Low_complexity 1 30 0 844 148 104 0 chr1 3260479 3260661 -278933003 - Tigger7 DNA MER2_type -3 2484 2284 * 1093 218 30 11 chr1 3260660 3260922 -278932742 - Tigger7 DNA MER2_type -233 500 234 288 297 48 0 chr1 3261504 3261669 -278931995 + (CCGCG)n Simple_repeat Simple_repeat 4 176 0 224 317 50 0 chr1 3261592 3261753 -278931911 + (CACGT)n Simple_repeat Simple_repeat 1 169 0 * 2291 80 7 0 chr1 3264290 3264590 -278929074 - AluSp SINE Alu -11 302 1 352 340 89 38 chr1 3264590 3264815 -278928849 - L1 LINE L1 -1225 4921 4667 663 216 0 0 chr1 3264815 3264940 -278928724 - FLAM_A SINE Alu -8 125 1 352 340 89 38 chr1 3264940 3264993 -278928671 - L1 LINE L1 -1479 4667 4618 444 320 20 0 chr1 3265057 3265257 -278928407 - L1 LINE L1 -3732 2414 2211 513 376 82 9 chr1 3265311 3265654 -278928010 - L1ME1 LINE L1 -16 6150 5783 287 333 0 18 chr1 3268411 3268522 -278925142 - L1MC5 LINE L1 -173 7788 7680 1857 164 27 0 chr1 3269189 3269487 -278924177 - AluJb SINE Alu -6 306 1 2135 116 0 0 chr1 3271216 3271508 -278922156 - AluJb SINE Alu -20 292 1 253 223 184 10 chr1 3272369 3272472 -278921192 - L2 LINE L2 -14 3258 3138 256 157 0 0 chr1 3272570 3272621 -278921043 - L2 LINE L2 -337 2976 2926 273 375 50 0 chr1 3272960 3273080 -278920584 + L2 LINE L2 2626 2751 -563 27 0 0 0 chr1 3273599 3273626 -278920038 + GC_rich Low_complexity Low_complexity 1 27 0 308 268 154 8 chr1 3273993 3274116 -278919548 + MIR SINE MIR 31 171 -91 21 0 0 0 chr1 3276239 3276260 -278917404 + AT_rich Low_complexity Low_complexity 1 21 0 2079 123 3 10 chr1 3276897 3277206 -278916458 + AluSc SINE Alu 3 309 0 2230 103 0 6 chr1 3277316 3277628 -278916036 + AluSx SINE Alu 1 310 -2 1990 146 11 76 chr1 3277628 3277839 -278915825 + MER4D LTR ERV1 19 187 -716 2201 118 0 0 chr1 3277839 3278144 -278915520 + AluSx SINE Alu 1 305 -7 1990 146 11 76 chr1 3278144 3278378 -278915286 + MER4D LTR ERV1 187 435 -468 1069 55 0 0 chr1 3278424 3278552 -278915112 + AluSq/x SINE Alu 1 128 -184 1948 142 0 0 chr1 3278774 3279077 -278914587 + AluSx SINE Alu 1 303 0 23 0 0 0 chr1 3280497 3280520 -278913144 + GC_rich Low_complexity Low_complexity 1 23 0 299 342 40 13 chr1 3282224 3282449 -278911215 - L1M4 LINE L1 -832 5314 5084 2058 123 10 0 chr1 3282498 3282798 -278910866 + AluSp SINE Alu 1 303 -10 2153 32 4 0 chr1 3485772 3486020 -278707644 + L1PA3 LINE L1 5904 6152 -3 241 200 200 0 chr1 3486096 3486156 -278707508 - L2 LINE L2 -1 3312 3241 508 333 60 9 chr1 3487514 3487730 -278705934 - MIR SINE MIR -16 246 20 315 114 80 0 chr1 3487734 3487822 -278705842 + CT-rich Low_complexity Low_complexity 4 98 0 236 219 0 14 chr1 3487928 3488001 -278705663 + CT-rich Low_complexity Low_complexity 4 75 0 524 190 114 51 chr1 3489861 3490019 -278703645 + MIR SINE MIR 81 248 -14 487 191 6 6 chr1 3490588 3490761 -278702903 + (TG)n Simple_repeat Simple_repeat 2 174 0 195 146 0 0 chr1 3490788 3490829 -278702835 + (TG)n Simple_repeat Simple_repeat 2 42 0 416 233 16 0 chr1 3491189 3491318 -278702346 + GA-rich Low_complexity Low_complexity 1 131 0 1433 131 25 0 chr1 3492647 3492883 -278700781 - LTR19B LTR ERV1 0 580 339 488 355 0 22 chr1 3493826 3494009 -278699655 + (TG)n Simple_repeat Simple_repeat 2 180 0 258 317 96 54 chr1 3494156 3494323 -278699341 - MER5A DNA MER1_type -2 187 14 763 165 104 0 chr1 3494699 3494863 -278698801 + MER105 DNA DNA 17 197 -7 186 299 30 0 chr1 3495747 3495814 -278697850 + L2 LINE L2 3245 3313 0 616 257 196 47 chr1 3496196 3496558 -278697106 + MLT1J2 LTR MaLR 35 450 0 271 348 18 18 chr1 3496615 3496727 -278696937 + L2 LINE L2 2981 3092 -180 245 169 17 0 chr1 3496912 3496971 -278696693 + GA-rich Low_complexity Low_complexity 1 60 0 555 102 66 0 chr1 3497228 3497365 -278696299 + (TCCA)n Simple_repeat Simple_repeat 1 146 0 644 108 52 8 chr1 3497495 3497747 -278695917 + (TCCA)n Simple_repeat Simple_repeat 1 263 0 680 108 67 0 chr1 3497912 3498355 -278695309 + (TCCA)n Simple_repeat Simple_repeat 1 472 0 1492 135 154 34 chr1 3498431 3498697 -278694967 + AluSg SINE Alu 1 298 -2 599 210 4 4 chr1 3498747 3498985 -278694679 + (TCTA)n Simple_repeat Simple_repeat 1 238 0 300 82 20 20 chr1 3498985 3499034 -278694630 + (TCCA)n Simple_repeat Simple_repeat 1 49 0 213 121 0 0 chr1 3499034 3499067 -278694597 + (TC)n Simple_repeat Simple_repeat 2 34 0 483 63 0 0 chr1 3499073 3499136 -278694528 + (TTCC)n Simple_repeat Simple_repeat 2 64 0 846 251 39 60 chr1 3499150 3499481 -278694183 + MLT1I LTR MaLR 84 407 -2 376 299 68 47 chr1 3499481 3499715 -278693949 - L1ME LINE L1 -530 5591 5353 3163 31 3 0 chr1 3501919 3502311 -278691353 - L1PA2 LINE L1 -429 5726 5334 4008 20 7 2 chr1 3502311 3502782 -278690882 + L1PA2 LINE L1 5693 6155 0 26 0 0 0 chr1 3502797 3502823 -278690841 + AT_rich Low_complexity Low_complexity 1 26 0 5284 140 17 10 chr1 3502849 3503886 -278689778 + L1PA16 LINE L1 5100 6150 -16 191 283 44 44 chr1 3504512 3504625 -278689039 + MIR SINE MIR 19 131 -77 306 129 0 0 chr1 3504781 3504843 -278688821 + (CTCA)n Simple_repeat Simple_repeat 2 63 0 278 258 10 93 chr1 3505086 3505183 -278688481 - L2 LINE L2 -16 3297 3209 1806 263 30 16 chr1 3505651 3506157 -278687507 - LTR40a LTR ERVL -3 516 4 265 308 26 13 chr1 3506158 3506236 -278687428 + MIR SINE MIR 93 171 -91 245 211 56 44 chr1 3508566 3508656 -278685008 + L1P LINE L1 606 696 -5450 251 361 50 0 chr1 3508925 3509044 -278684620 - MIR3 SINE MIR -7 201 77 1253 152 13 5 chr1 3509054 3509278 -278684386 + L1MA8 LINE L1 5596 5821 -479 1151 147 0 6 chr1 3509278 3509455 -278684209 + AluJb SINE Alu 41 216 -96 2155 131 38 0 chr1 3509455 3509799 -278683865 - THE1B LTR MaLR -2 362 6 473 69 14 0 chr1 3509786 3509858 -278683806 - MLT2A2 LTR ERVL -380 73 1 * 338 228 0 25 chr1 3509863 3509942 -278683722 + AluSp/q SINE Alu 226 302 -1 2757 143 11 19 chr1 3509943 3510413 -278683251 + L1MA8 LINE L1 5814 6279 -12 323 238 12 12 chr1 3510498 3510582 -278683082 + MER96 DNA MER1_type? 1 84 -91 1035 99 0 14 chr1 3510804 3510945 -278682719 + AluSq/x SINE Alu 1 139 -174 407 123 0 0 chr1 3510950 3511007 -278682657 + FAM SINE Alu 116 172 -13 321 26 0 0 chr1 3511007 3511045 -278682619 + (TA)n Simple_repeat Simple_repeat 2 39 0 751 171 0 23 chr1 3511052 3511181 -278682483 + FLAM_C SINE Alu 2 127 -16 920 310 103 13 chr1 3511218 3511605 -278682059 - MLT1K LTR MaLR -128 460 39 204 297 109 64 chr1 3512477 3512679 -278680985 + MIR SINE MIR 52 262 0 208 31 0 0 chr1 3512966 3512998 -278680666 - L2 LINE L2 -213 3059 3028 244 300 44 0 chr1 3513503 3513593 -278680071 + MIR SINE MIR 88 181 -81 192 327 70 26 chr1 3514535 3514691 -278678973 + MIR3 SINE MIR 30 192 -16 2016 108 0 0 chr1 3514787 3515064 -278678600 - AluSg SINE Alu -16 294 18 713 246 29 6 chr1 3516233 3516408 -278677256 + MER91A DNA MER1_type 18 196 0 1833 199 162 16 chr1 3516439 3516926 -278676738 + MER74A LTR ERVL 1 558 0 252 283 88 9 chr1 3517151 3517264 -278676400 + MIR SINE MIR 28 149 -113 1704 201 117 47 chr1 3517329 3517781 -278675883 + MLT1D LTR MaLR 22 505 0 455 311 111 5 chr1 3517801 3517991 -278675673 + MIR SINE MIR 3 212 -50 5587 88 18 16 chr1 3518015 3518849 -278674815 - L1PA11 LINE L1 -4 6170 5335 197 256 100 22 chr1 3518980 3519070 -278674594 - MIR3 SINE MIR -48 160 64 225 313 60 0 chr1 3520710 3520793 -278672871 - L2 LINE L2 -28 3244 3157 227 284 74 0 chr1 3521219 3521300 -278672364 + MIR3 SINE MIR 114 200 -8 228 274 17 17 chr1 3522304 3522386 -278671278 + MIR SINE MIR 5 86 -122 664 111 47 23 chr1 3522909 3523080 -278670584 + CT-rich Low_complexity Low_complexity 2 176 0 195 129 0 0 chr1 3523077 3523108 -278670556 + (TTTTC)n Simple_repeat Simple_repeat 3 33 0 * 550 331 68 51 chr1 3523159 3523573 -278670091 - MLT1K LTR MaLR 0 588 168 262 359 0 0 chr1 3525804 3525907 -278667757 + (TCCA)n Simple_repeat Simple_repeat 3 105 0 1895 220 111 5 chr1 3526000 3526422 -278667242 - MLT1C LTR MaLR 0 467 1 763 208 138 103 chr1 3526928 3527240 -278666424 - MLT1J LTR MaLR -181 330 8 448 231 35 42 chr1 3528632 3528775 -278664889 - MER5A DNA MER1_type -28 161 20 2428 84 0 0 chr1 3529485 3529796 -278663868 - AluY SINE Alu 0 311 1 2029 125 3 10 chr1 3529830 3530143 -278663521 - AluSx SINE Alu -1 311 1 615 299 71 8 chr1 3530340 3530594 -278663070 + L1MD2 LINE L1 5737 6006 -353 2001 140 50 13 chr1 3530385 3530729 -278662935 + L1MB3 LINE L1 5792 6153 -30 2492 81 3 0 chr1 3530729 3531036 -278662628 + AluSp SINE Alu 1 308 -5 2001 140 50 13 chr1 3531036 3531069 -278662595 + L1MB3 LINE L1 6153 6183 0 1483 259 42 18 chr1 3531295 3531844 -278661820 - L1M4 LINE L1 -891 5255 4694 369 0 0 0 chr1 3531844 3531885 -278661779 + (TTCC)n Simple_repeat Simple_repeat 1 41 0 921 140 11 11 chr1 3531885 3532064 -278661600 + CT-rich Low_complexity Low_complexity 1 179 0 2168 126 17 0 chr1 3532074 3532375 -278661289 - AluSq SINE Alu -7 306 1 1120 171 0 0 chr1 3532433 3532609 -278661055 - AluSg/x SINE Alu -7 303 128 829 235 34 15 chr1 3532610 3532874 -278660790 - L1M4 LINE L1 -1504 4642 4374 596 171 0 0 chr1 3532879 3532984 -278660680 - L1MA9 LINE L1 -5 6307 6203 653 132 53 0 chr1 3532986 3533100 -278660564 + L1MA9 LINE L1 6096 6215 -97 * 2101 127 3 3 chr1 3533104 3533403 -278660261 - AluSq SINE Alu -14 299 1 1515 258 30 19 chr1 3533403 3533843 -278659821 - L1M4 LINE L1 -1759 4387 3936 1104 196 25 53 chr1 3533843 3534088 -278659576 - MER8 DNA MER2_type -1 238 1 1515 258 30 19 chr1 3534088 3534176 -278659488 - L1M4 LINE L1 -2210 3936 3850 232 192 0 19 chr1 3534247 3534299 -278659365 + MLT1E3 LTR MaLR 279 329 -295 208 379 93 6 chr1 3534881 3535042 -278658622 + MIR SINE MIR 56 230 -32 1019 74 0 0 chr1 3535573 3535694 -278657970 + AluSp SINE Alu 1 121 -192 1374 93 0 0 chr1 3535844 3536016 -278657648 + AluSp SINE Alu 132 303 -10 701 233 21 52 chr1 3536026 3536385 -278657279 - MLT1A1 LTR MaLR -42 323 1 8521 167 76 89 chr1 3536458 3537229 -278656435 - L1MC3 LINE L1 -7 7778 6998 338 97 0 81 chr1 3537229 3537291 -278656373 - Alu SINE Alu -4 298 242 8521 167 76 89 chr1 3537291 3537744 -278655920 - L1MC3 LINE L1 -787 6998 6540 577 25 25 0 chr1 3537744 3537823 -278655841 + (TCTA)n Simple_repeat Simple_repeat 2 82 0 8521 167 76 89 chr1 3537823 3538506 -278655158 - L1MC3 LINE L1 -1245 6540 5849 1454 151 9 22 chr1 3538506 3538738 -278654926 - AluJo SINE Alu -21 291 63 2323 121 0 0 chr1 3538746 3539052 -278654612 - AluSg SINE Alu -4 306 1 1831 156 7 14 chr1 3539054 3539342 -278654322 - AluJb SINE Alu -14 298 13 8521 167 76 89 chr1 3539342 3539742 -278653922 - L1MC3 LINE L1 -1944 5841 5428 198 236 0 0 chr1 3540436 3540491 -278653173 + (TG)n Simple_repeat Simple_repeat 1 55 0 269 264 0 0 chr1 3541082 3541135 -278652529 - L2 LINE L2 -5 3267 3215 699 213 101 43 chr1 3541967 3542174 -278651490 + MER20 DNA MER1_type 1 219 0 2018 82 32 3 chr1 3542320 3542602 -278651062 - L1PB1 LINE L1 -1 6150 5861 260 231 15 0 chr1 3542962 3543027 -278650637 - MLT1B LTR MaLR -6 384 319 649 229 246 7 chr1 3543029 3543309 -278650355 - MLT1B LTR MaLR -120 347 1 241 300 98 19 chr1 3544726 3544904 -278648760 - MIR SINE MIR -44 218 19 195 268 0 0 chr1 3544983 3545080 -278648584 + (CA)n Simple_repeat Simple_repeat 1 97 0 204 40 0 0 chr1 3545377 3545402 -278648262 + (TC)n Simple_repeat Simple_repeat 1 25 0 * 288 0 0 0 chr1 3545401 3545433 -278648231 + (CA)n Simple_repeat Simple_repeat 1 32 0 320 251 49 80 chr1 3547286 3547449 -278646215 - MLT1I LTR MaLR -165 244 87 277 226 0 0 chr1 3547436 3547498 -278646166 - MLT1I LTR MaLR -261 148 87 * 363 293 60 0 chr1 3547485 3547618 -278646046 - MLT1I LTR MaLR -261 148 8 247 244 114 41 chr1 3548999 3549122 -278644542 - L2 LINE L2 0 3272 3141 372 225 22 0 chr1 3549336 3549425 -278644239 - MER5A DNA MER1_type -83 106 16 304 153 17 0 chr1 3551292 3551351 -278642313 - L1ME4a LINE L1 0 6121 6062 522 288 83 10 chr1 3551676 3551881 -278641783 - MIR SINE MIR -10 252 33 2420 198 44 49 chr1 3552018 3552633 -278641031 + MLT1E1 LTR MaLR 43 654 0 280 303 91 91 chr1 3553555 3553829 -278639835 + L2 LINE L2 2968 3241 -31 384 280 0 28 chr1 3553979 3554086 -278639578 - MIR3 SINE MIR -52 156 53 399 273 99 12 chr1 3554270 3554431 -278639233 - MER96 DNA MER1_type? 0 175 1 978 155 5 5 chr1 3554518 3555093 -278638571 + (TCCA)n Simple_repeat Simple_repeat 1 755 0 204 40 0 0 chr1 3555140 3555165 -278638499 + (CCTA)n Simple_repeat Simple_repeat 2 26 0 188 292 0 0 chr1 3555276 3555324 -278638340 + L2 LINE L2 2921 2968 -345 454 221 43 80 chr1 3556106 3556269 -278637395 + L2 LINE L2 3156 3312 -1 653 271 133 28 chr1 3556457 3556675 -278636989 + MIR SINE MIR 16 256 -6 5159 256 55 37 chr1 3557622 3558845 -278634819 + L1MEc LINE L1 234 1433 -4963 2259 119 0 3 chr1 3558845 3559156 -278634508 + AluSx SINE Alu 1 310 -2 5159 256 55 37 chr1 3559156 3559193 -278634471 + L1MEc LINE L1 1433 1468 -4928 2107 146 7 0 chr1 3559193 3559502 -278634162 + AluJb SINE Alu 1 311 -1 5159 256 55 37 chr1 3559502 3560003 -278633661 + L1MEc LINE L1 1468 2038 -4358 2438 148 25 39 chr1 3560003 3560050 -278633614 - MSTA LTR MaLR 0 428 382 2254 95 0 10 chr1 3560050 3560344 -278633320 + AluSc SINE Alu 1 291 -18 2438 148 25 39 chr1 3560344 3560728 -278632936 - MSTA LTR MaLR -46 382 3 5159 256 55 37 chr1 3560728 3560933 -278632731 + L1MEc LINE L1 2038 2238 -4158 255 230 126 46 chr1 3561618 3561705 -278631959 + L2 LINE L2 3175 3268 -4 1647 226 19 14 chr1 3561769 3562132 -278631532 - MLT1A1 LTR MaLR 0 365 1 229 233 10 68 chr1 3563181 3563284 -278630380 - L1ME4a LINE L1 -50 6071 5975 207 200 25 0 chr1 3563752 3563792 -278629872 - MER5A DNA MER1_type -134 55 15 2223 107 3 0 chr1 3564094 3564385 -278629279 - AluSp SINE Alu -21 292 1 2499 99 8 8 chr1 3564466 3564820 -278628844 - THE1A LTR MaLR 0 355 2 365 288 42 17 chr1 3564899 3565017 -278628647 + MIR3 SINE MIR 13 133 -75 300 234 31 26 chr1 3565293 3565410 -278628254 - LTR41 LTR ERVL 0 795 658 284 275 62 25 chr1 3566610 3566770 -278626894 - LTR41 LTR ERVL -607 166 1 670 172 0 14 chr1 3566999 3567144 -278626520 + GA-rich Low_complexity Low_complexity 2 144 0 2220 154 12 51 chr1 3567415 3567825 -278625839 + MSTD LTR MaLR 1 394 -2 377 329 51 0 chr1 3568546 3568683 -278624981 + MIR SINE MIR 15 158 -104 584 285 57 0 chr1 3568691 3568884 -278624780 - MIR SINE MIR -51 211 8 320 251 68 25 chr1 3569482 3569645 -278624019 - MLT1I LTR MaLR -16 393 224 2235 195 24 9 chr1 3570070 3570527 -278623137 - MLT1C LTR MaLR 0 467 4 274 282 15 0 chr1 3570789 3570869 -278622795 + MIR SINE MIR 36 116 -92 209 277 46 0 chr1 3571723 3571788 -278621876 - MIR SINE MIR -97 165 98 217 104 62 21 chr1 3572046 3572094 -278621570 + T-rich Low_complexity Low_complexity 3 52 0 2288 166 41 37 chr1 3573212 3573709 -278619955 - L1MC4a LINE L1 -484 5671 5177 187 31 62 0 chr1 3573709 3573741 -278619923 + (TTTA)n Simple_repeat Simple_repeat 3 36 0 6244 29 10 0 chr1 3573741 3574470 -278619194 - L1PA4 LINE L1 -16 6139 5404 2288 166 41 37 chr1 3574470 3574617 -278619047 - L1MC4a LINE L1 -755 5400 5255 234 91 0 0 chr1 3574669 3574702 -278618962 + (CAAAA)n Simple_repeat Simple_repeat 3 35 0 407 63 16 0 chr1 3575470 3575533 -278618131 + (TC)n Simple_repeat Simple_repeat 1 64 0 251 316 171 0 chr1 3576235 3576387 -278617277 + MIR SINE MIR 65 242 -20 498 315 118 5 chr1 3576535 3576738 -278616926 + MIR SINE MIR 32 257 -5 227 314 102 58 chr1 3577454 3577591 -278616073 - MIR SINE MIR -91 171 29 354 299 10 0 chr1 3578690 3578787 -278614877 - MIR SINE MIR -47 215 118 189 314 48 19 chr1 3578788 3578893 -278614771 + MIR SINE MIR 132 239 -23 277 289 0 31 chr1 3579198 3579295 -278614369 + L3 LINE CR1 583 676 -901 487 318 59 25 chr1 3579331 3579567 -278614097 - MIR SINE MIR -15 247 4 367 341 47 12 chr1 3579580 3579750 -278613914 + L3 LINE CR1 709 884 -693 927 230 15 0 chr1 3579978 3580182 -278613482 + MER58A DNA MER1_type 1 207 -17 183 314 0 43 chr1 3580607 3580677 -278612987 + L2 LINE L2 2294 2360 -954 1687 225 67 23 chr1 3580773 3581292 -278612372 - MER77 LTR ERV1 -10 595 54 184 279 73 15 chr1 3581330 3581398 -278612266 + L2 LINE L2 2907 2978 -335 207 313 12 0 chr1 3581806 3581889 -278611775 + L2 LINE L2 3202 3285 -28 2504 117 16 19 chr1 3582704 3583080 -278610584 - THE1C LTR MaLR 0 375 1 448 257 155 16 chr1 3584124 3584322 -278609342 - L1MC3 LINE L1 -10 7775 6096 1061 86 7 13 chr1 3585164 3585316 -278608348 - L1PA8 LINE L1 -3 6169 6019 23 54 0 0 chr1 3585334 3585371 -278608293 + AT_rich Low_complexity Low_complexity 1 37 0 487 160 191 0 chr1 3585382 3585513 -278608151 - Charlie5 DNA MER1_type -98 2514 2359 207 133 0 0 chr1 3585573 3585603 -278608061 + L2 LINE L2 3230 3259 -13 6879 61 14 2 chr1 3585716 3587054 -278606610 - L1PA7 LINE L1 -1 6153 4813 376 329 17 43 chr1 3587112 3587343 -278606321 + L1MD2 LINE L1 5535 5759 -2049 2084 129 99 40 chr1 3587343 3587702 -278605962 + MSTA LTR MaLR 1 388 -40 2089 108 47 0 chr1 3587702 3587998 -278605666 - AluSx SINE Alu -2 310 1 2084 129 99 40 chr1 3587998 3588042 -278605622 + MSTA LTR MaLR 388 428 0 443 261 0 0 chr1 3588549 3588572 -278605092 + L2 LINE L2 3198 3220 -93 2039 124 31 7 chr1 3588572 3588863 -278604801 - AluSx SINE Alu -14 298 1 443 261 0 0 chr1 3588863 3588931 -278604733 + L2 LINE L2 3219 3289 -24 188 235 0 0 chr1 3590351 3590385 -278603279 + L2 LINE L2 3165 3198 -74 1653 214 30 42 chr1 3590436 3590581 -278603083 - MLT1C LTR MaLR 0 467 322 3439 150 2 11 chr1 3590581 3591113 -278602551 + MER1A DNA MER1_type 1 527 0 1653 214 30 42 chr1 3591113 3591440 -278602224 - MLT1C LTR MaLR -145 322 1 238 388 10 0 chr1 3591617 3591715 -278601949 - MIR SINE MIR 0 262 164 220 269 93 46 chr1 3592495 3592603 -278601061 - L2 LINE L2 -1 3312 3200 307 263 34 34 chr1 3593976 3594094 -278599570 + L1MD2 LINE L1 6046 6163 -196 246 253 0 0 chr1 3594169 3594268 -278599396 + (CA)n Simple_repeat Simple_repeat 2 100 0 354 269 0 0 chr1 3594286 3594507 -278599157 + (CA)n Simple_repeat Simple_repeat 1 221 0 264 275 0 0 chr1 3594542 3594702 -278598962 + (CA)n Simple_repeat Simple_repeat 1 160 0 306 269 0 0 chr1 3594730 3594886 -278598778 + (CA)n Simple_repeat Simple_repeat 1 156 0 231 173 0 0 chr1 3594918 3594970 -278598694 + (CA)n Simple_repeat Simple_repeat 1 52 0 404 297 36 18 chr1 3594994 3595213 -278598451 + L1MD2 LINE L1 6132 6354 -5 28 71 0 0 chr1 3595273 3595329 -278598335 + AT_rich Low_complexity Low_complexity 1 56 0 22 0 0 0 chr1 3595399 3595421 -278598243 + AT_rich Low_complexity Low_complexity 1 22 0 2229 100 0 21 chr1 3596820 3597398 -278596266 - L1PA10 LINE L1 -595 5573 5011 4330 86 26 0 chr1 3597398 3597973 -278595691 + L1PA10 LINE L1 5558 6157 -11 197 397 44 7 chr1 3598051 3598187 -278595477 + L3 LINE CR1 1000 1140 -437 228 333 152 24 chr1 3598292 3598457 -278595207 + L3 LINE CR1 1335 1520 -57 519 306 16 0 chr1 3599896 3600017 -278593647 - L2 LINE L2 0 3313 3191 295 183 0 0 chr1 3600863 3600923 -278592741 - L1MA10 LINE L1 -7 6327 6268 1864 158 25 51 chr1 3600924 3601317 -278592347 + MLT1B LTR MaLR 8 390 0 3198 223 33 61 chr1 3601317 3602856 -278590808 - L1ME1 LINE L1 -97 6138 4664 2279 112 0 10 chr1 3602856 3603159 -278590505 - AluSx SINE Alu -12 300 1 3198 223 33 61 chr1 3603159 3603445 -278590219 - L1ME1 LINE L1 -1571 4664 4372 240 263 0 0 chr1 3603454 3603511 -278590153 - L1ME1 LINE L1 -1817 4398 4342 * 811 218 45 30 chr1 3603509 3603775 -278589889 - L1ME1 LINE L1 -2828 3387 3118 1239 279 79 22 chr1 3603780 3604274 -278589390 - L1ME1 LINE L1 -5754 642 121 597 143 50 99 chr1 3604301 3604462 -278589202 + MLT2B1 LTR ERVL 366 518 -2 230 308 0 0 chr1 3604469 3604534 -278589130 - L1ME1 LINE L1 -6295 101 37 186 43 0 0 chr1 3605709 3605732 -278587932 + (CA)n Simple_repeat Simple_repeat 2 24 0 367 326 116 6 chr1 3606031 3606203 -278587461 + L1ME4a LINE L1 5695 5885 -236 2015 96 0 0 chr1 3606831 3607080 -278586584 - AluSx SINE Alu -63 249 1 720 261 97 13 chr1 3608328 3608566 -278585098 + L2 LINE L2 2501 2758 -556 2745 145 11 11 chr1 3608606 3609082 -278584582 + MER31A LTR ERV1 2 477 -8 1233 238 80 28 chr1 3609078 3609478 -278584186 + MLT1C LTR MaLR 45 465 -2 * 325 357 36 11 chr1 3609480 3609805 -278583859 + L2 LINE L2 2752 3082 -231 200 321 160 11 chr1 3611666 3611853 -278581811 + L2 LINE L2 2285 2499 -815 2271 129 0 0 chr1 3613716 3614027 -278579637 - AluSx SINE Alu -1 311 1 3237 191 34 26 chr1 3614739 3615195 -278578469 + L1MB7 LINE L1 5442 5908 -276 2223 206 15 23 chr1 3615195 3615666 -278577998 - MLT1C LTR MaLR 0 467 1 3237 191 34 26 chr1 3615666 3615936 -278577728 + L1MB7 LINE L1 5908 6174 -10 2141 243 42 41 chr1 3617234 3618133 -278575531 + L1ME LINE L1 2472 3371 -2775 824 236 49 12 chr1 3618146 3618160 -278575504 + L1ME LINE L1 5263 5275 -891 2158 136 0 0 chr1 3618160 3618455 -278575209 - AluSx SINE Alu -17 295 1 824 236 49 12 chr1 3618455 3618686 -278574978 + L1ME LINE L1 5275 5517 -649 702 90 0 10 chr1 3618720 3618820 -278574844 - L1PA5 LINE L1 -8 6146 6048 2279 241 76 17 chr1 3618821 3619152 -278574512 + L1MEc LINE L1 2020 2330 -3885 225 0 0 0 chr1 3619152 3619177 -278574487 + (TG)n Simple_repeat Simple_repeat 2 26 0 2279 241 76 17 chr1 3619177 3619883 -278573781 + L1MEc LINE L1 2330 3063 -3152 414 30 0 30 chr1 3620687 3620754 -278572910 + AluSp/q SINE Alu 243 307 -6 1609 261 35 23 chr1 3621013 3621542 -278572122 - L1M4 LINE L1 -891 5255 4734 735 62 0 0 chr1 3621542 3621639 -278572025 + (TTCC)n Simple_repeat Simple_repeat 1 97 0 1088 79 22 11 chr1 3621639 3621817 -278571847 + (TTTC)n Simple_repeat Simple_repeat 1 180 0 2163 130 17 0 chr1 3621827 3622128 -278571536 - AluSq SINE Alu -7 306 1 1609 261 35 23 chr1 3622128 3622187 -278571477 - L1M4 LINE L1 -1420 4726 4648 1145 165 0 0 chr1 3622187 3622363 -278571301 - AluSg/x SINE Alu -7 305 130 837 231 34 15 chr1 3622364 3622628 -278571036 - L1M4 LINE L1 -1504 4642 4374 596 171 0 0 chr1 3622633 3622738 -278570926 - L1MA9 LINE L1 -5 6307 6203 653 132 53 0 chr1 3622740 3622854 -278570810 + L1MA9 LINE L1 6096 6215 -97 * 2110 127 3 3 chr1 3622858 3623158 -278570506 - AluSq SINE Alu -13 300 1 1515 258 30 19 chr1 3623158 3623598 -278570066 - L1M4 LINE L1 -1759 4387 3936 1104 196 25 53 chr1 3623598 3623843 -278569821 - MER8 DNA MER2_type -1 238 1 1515 258 30 19 chr1 3623843 3623931 -278569733 - L1M4 LINE L1 -2210 3936 3850 232 192 0 19 chr1 3624002 3624054 -278569610 + MLT1E3 LTR MaLR 279 329 -295 208 379 93 6 chr1 3624636 3624797 -278568867 + MIR SINE MIR 56 230 -32 1019 74 0 0 chr1 3625328 3625449 -278568215 + AluSp SINE Alu 1 121 -192 1382 92 0 0 chr1 3625599 3625772 -278567892 + AluSp SINE Alu 132 304 -9 701 233 21 52 chr1 3625782 3626141 -278567523 - MLT1A1 LTR MaLR -42 323 1 8551 167 76 88 chr1 3626214 3626985 -278566679 - L1MC3 LINE L1 -7 7778 7000 338 97 0 81 chr1 3626985 3627047 -278566617 - Alu SINE Alu -4 298 242 8551 167 76 88 chr1 3627047 3627500 -278566164 - L1MC3 LINE L1 -785 7000 6543 505 28 28 0 chr1 3627500 3627571 -278566093 + (TCTA)n Simple_repeat Simple_repeat 2 74 0 8551 167 76 88 chr1 3627571 3628254 -278565410 - L1MC3 LINE L1 -1242 6543 5854 1454 151 9 22 chr1 3628254 3628486 -278565178 - AluJo SINE Alu -21 291 63 2281 123 3 0 chr1 3628489 3628798 -278564866 - AluSg SINE Alu 0 310 1 1831 156 7 14 chr1 3628800 3629088 -278564576 - AluJb SINE Alu -14 298 13 8551 167 76 88 chr1 3629088 3629488 -278564176 - L1MC3 LINE L1 -1934 5851 5428 198 236 0 0 chr1 3630182 3630237 -278563427 + (TG)n Simple_repeat Simple_repeat 1 55 0 269 264 0 0 chr1 3630828 3630881 -278562783 - L2 LINE L2 -5 3267 3215 699 213 101 43 chr1 3631713 3631920 -278561744 + MER20 DNA MER1_type 1 219 0 2018 82 32 3 chr1 3632066 3632348 -278561316 - L1PB1 LINE L1 -1 6150 5861 260 231 15 0 chr1 3632707 3632772 -278560892 - MLT1B LTR MaLR -6 384 319 626 232 246 7 chr1 3632774 3633054 -278560610 - MLT1B LTR MaLR -120 347 1 259 292 98 19 chr1 3634471 3634649 -278559015 - MIR SINE MIR -44 218 19 195 268 0 0 chr1 3634728 3634825 -278558839 + (CA)n Simple_repeat Simple_repeat 1 97 0 198 0 0 0 chr1 3635122 3635144 -278558520 + (TC)n Simple_repeat Simple_repeat 2 23 0 315 0 0 0 chr1 3635145 3635180 -278558484 + (CA)n Simple_repeat Simple_repeat 2 36 0 320 251 49 80 chr1 3637033 3637196 -278556468 - MLT1I LTR MaLR -165 244 87 277 226 0 0 chr1 3637183 3637245 -278556419 - MLT1I LTR MaLR -261 148 87 * 363 293 60 0 chr1 3637232 3637365 -278556299 - MLT1I LTR MaLR -261 148 8 247 244 114 41 chr1 3638746 3638869 -278554795 - L2 LINE L2 0 3272 3141 372 225 22 0 chr1 3639083 3639172 -278554492 - MER5A DNA MER1_type -83 106 16 304 153 17 0 chr1 3641039 3641098 -278552566 - L1ME4a LINE L1 0 6121 6062 505 293 83 10 chr1 3641423 3641628 -278552036 - MIR SINE MIR -10 252 33 2387 202 44 49 chr1 3641765 3642380 -278551284 + MLT1E1 LTR MaLR 43 654 0 280 303 91 91 chr1 3643302 3643576 -278550088 + L2 LINE L2 2968 3241 -31 384 280 0 28 chr1 3643726 3643833 -278549831 - MIR3 SINE MIR -52 156 53 374 284 93 12 chr1 3644017 3644179 -278549485 - MER96 DNA MER1_type? 0 175 1 999 152 5 5 chr1 3644266 3644841 -278548823 + (TCCA)n Simple_repeat Simple_repeat 1 755 0 204 40 0 0 chr1 3644888 3644913 -278548751 + (CCTA)n Simple_repeat Simple_repeat 2 26 0 188 292 0 0 chr1 3645024 3645072 -278548592 + L2 LINE L2 2921 2968 -345 454 221 43 80 chr1 3645854 3646017 -278547647 + L2 LINE L2 3156 3312 -1 653 271 133 28 chr1 3646205 3646423 -278547241 + MIR SINE MIR 16 256 -6 5048 254 55 46 chr1 3647370 3648593 -278545071 + L1MEc LINE L1 234 1444 -4952 2255 122 0 3 chr1 3648593 3648905 -278544759 + AluSx SINE Alu 1 311 -1 5048 254 55 46 chr1 3648905 3648942 -278544722 + L1MEc LINE L1 1444 1479 -4917 2178 136 7 0 chr1 3648942 3649252 -278544412 + AluJb SINE Alu 1 312 0 5048 254 55 46 chr1 3649252 3649771 -278543893 + L1MEc LINE L1 1479 2036 -4360 2438 148 25 39 chr1 3649771 3649818 -278543846 - MSTA LTR MaLR 0 428 382 2292 92 0 10 chr1 3649818 3650113 -278543551 + AluSc SINE Alu 1 292 -17 2438 148 25 39 chr1 3650113 3650497 -278543167 - MSTA LTR MaLR -46 382 3 5048 254 55 46 chr1 3650497 3650702 -278542962 + L1MEc LINE L1 2036 2238 -4158 255 230 126 46 chr1 3651387 3651474 -278542190 + L2 LINE L2 3175 3268 -4 1647 226 19 14 chr1 3651538 3651901 -278541763 - MLT1A1 LTR MaLR 0 365 1 229 233 10 68 chr1 3652950 3653053 -278540611 - L1ME4a LINE L1 -50 6071 5975 207 200 25 0 chr1 3653521 3653561 -278540103 - MER5A DNA MER1_type -134 55 15 2200 110 3 0 chr1 3653863 3654154 -278539510 - AluSp SINE Alu -21 292 1 2529 93 8 8 chr1 3654234 3654588 -278539076 - THE1A LTR MaLR 0 355 2 378 294 34 17 chr1 3654667 3654786 -278538878 + MIR3 SINE MIR 13 133 -75 300 234 31 26 chr1 3655062 3655179 -278538485 - LTR41 LTR ERVL 0 795 658 284 275 62 25 chr1 3656313 3656473 -278537191 - LTR41 LTR ERVL -607 166 1 2368 113 0 0 chr1 3656632 3656934 -278536730 - AluSx SINE Alu -10 302 1 497 263 65 50 chr1 3656958 3657160 -278536504 + MLT1I LTR MaLR 128 337 -72 2117 122 0 39 chr1 3657160 3657472 -278536192 + AluY SINE Alu 1 300 -11 497 263 65 50 chr1 3657472 3657547 -278536117 + MLT1I LTR MaLR 337 409 0 528 249 61 36 chr1 3657547 3657712 -278535952 - MIR SINE MIR -67 195 27 213 236 125 0 chr1 3658047 3658119 -278535545 - L2 LINE L2 -3 3269 3189 415 280 143 6 chr1 3659155 3659330 -278534334 + MIR SINE MIR 48 246 -16 1618 268 36 4 chr1 3661636 3662189 -278531475 + L1ME2 LINE L1 3063 3633 -2513 618 245 108 51 chr1 3662189 3662503 -278531161 + L1ME2 LINE L1 4715 5046 -1100 931 210 11 0 chr1 3662526 3662712 -278530952 + MER3 DNA MER1_type 22 209 0 2375 238 71 7 chr1 3662712 3663672 -278529992 + L1ME2 LINE L1 5036 6060 -104 2325 158 40 37 chr1 3663791 3664221 -278529443 + Tigger2a DNA MER2_type 3 433 -1 282 217 22 3 chr1 3664221 3664307 -278529357 + L1ME2 LINE L1 6075 6163 -1 2127 113 3 0 chr1 3664342 3664661 -278529003 + AluSx SINE Alu 1 320 0 33 43 0 0 chr1 3664849 3664896 -278528768 + AT_rich Low_complexity Low_complexity 1 47 0 598 281 52 60 chr1 3665099 3665566 -278528098 + L1MC5 LINE L1 6481 6984 -824 592 89 0 40 chr1 3665608 3665732 -278527932 + (GA)n Simple_repeat Simple_repeat 1 119 0 373 336 74 41 chr1 3665732 3666071 -278527593 + L1MEd LINE L1 841 1190 -4929 795 92 0 49 chr1 3666098 3666283 -278527381 + (GA)n Simple_repeat Simple_repeat 1 176 0 189 135 10 67 chr1 3666284 3666388 -278527276 + GA-rich Low_complexity Low_complexity 1 98 0 688 95 0 58 chr1 3666391 3666580 -278527084 + (GA)n Simple_repeat Simple_repeat 1 178 0 334 300 105 25 chr1 3666588 3666820 -278526844 + L1MEd LINE L1 974 1181 -4938 288 235 133 15 chr1 3666868 3667064 -278526600 + L1MC5 LINE L1 7003 7221 -740 366 258 0 11 chr1 3667064 3667153 -278526511 - MIR SINE MIR -138 124 37 2314 105 55 22 chr1 3667170 3667533 -278526131 + THE1C LTR MaLR 1 375 0 256 148 0 49 chr1 3667685 3667746 -278525918 + L1MC5 LINE L1 7856 7913 -48 275 343 0 12 chr1 3668185 3668357 -278525307 + (CACCC)n Simple_repeat Simple_repeat 3 172 0 234 91 0 0 chr1 3669129 3669162 -278524502 + (TGAA)n Simple_repeat Simple_repeat 1 33 0 2635 30 0 3 chr1 3669900 3670196 -278523468 + AluY SINE Alu 6 300 -11 673 258 104 69 chr1 3670913 3671433 -278522231 + MER115 DNA AcHobo 107 692 -1 1080 239 90 35 chr1 3672763 3673131 -278520533 + MLT1B LTR MaLR 1 388 -2 2297 91 3 13 chr1 3673652 3673960 -278519704 - AluY SINE Alu -6 305 1 1201 227 103 53 chr1 3674320 3674678 -278518986 - MLT1D LTR MaLR -8 497 112 1497 128 0 68 chr1 3674678 3674913 -278518751 - AluJb SINE Alu -9 303 85 1201 227 103 53 chr1 3674913 3674990 -278518674 - MLT1D LTR MaLR -393 112 40 379 283 142 19 chr1 3675251 3675456 -278518208 + MIR SINE MIR 21 250 -12 1916 180 43 53 chr1 3677237 3677345 -278516319 - MLT1D LTR MaLR 0 505 397 2351 112 7 0 chr1 3677345 3677650 -278516014 + AluSq SINE Alu 1 307 -6 1916 180 43 53 chr1 3677650 3678031 -278515633 - MLT1D LTR MaLR -108 397 21 402 115 0 0 chr1 3678074 3678135 -278515529 + (TG)n Simple_repeat Simple_repeat 2 62 0 433 303 26 41 chr1 3678167 3678362 -278515302 - MIR SINE MIR -58 204 13 2345 110 3 3 chr1 3678409 3678717 -278514947 + AluSx SINE Alu 1 308 -4 11357 173 42 22 chr1 3678963 3681573 -278512091 - L1 LINE L1 -1132 5014 2353 1403 184 42 84 chr1 3682710 3683091 -278510573 - MLT1A1 LTR MaLR 0 365 1 360 293 202 16 chr1 3683261 3683514 -278510150 + L2 LINE L2 2135 2434 -880 368 351 189 7 chr1 3683790 3684235 -278509429 + L2 LINE L2 2389 2914 -400 241 258 67 22 chr1 3684215 3684304 -278509360 + L2 LINE L2 3180 3272 0 * 2088 121 10 0 chr1 3684980 3685277 -278508387 + AluSx SINE Alu 1 300 -12 2238 127 116 10 chr1 3685309 3685696 -278507968 + MSTA LTR MaLR 1 428 0 2397 93 3 10 chr1 3686017 3686328 -278507336 - AluSc SINE Alu 0 309 1 362 238 67 19 chr1 3686707 3686812 -278506852 - MLT1J LTR MaLR -293 218 109 1749 172 19 94 chr1 3687098 3687522 -278506142 - MSTD LTR MaLR -4 392 1 207 0 0 0 chr1 3687704 3687727 -278505937 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 871 269 46 48 chr1 3688291 3688708 -278504956 - MLT1C LTR MaLR 0 467 52 297 219 0 0 chr1 3688957 3689030 -278504634 + (CA)n Simple_repeat Simple_repeat 1 73 0 384 287 169 30 chr1 3689430 3689796 -278503868 + HERVL LTR ERVL 1724 2140 -3514 703 278 47 0 chr1 3690087 3690256 -278503408 - MIR SINE MIR -53 209 33 1315 110 33 49 chr1 3690289 3690534 -278503130 + THE1C LTR MaLR 1 241 -134 504 48 0 0 chr1 3690534 3690597 -278503067 + THE1A LTR MaLR 1 63 -292 1887 82 59 0 chr1 3690855 3691125 -278502539 + THE1A LTR MaLR 70 355 0 995 101 2 0 chr1 3691125 3691270 -278502394 + THE1C LTR MaLR 237 375 0 272 238 0 10 chr1 3691639 3691740 -278501924 + GA-rich Low_complexity Low_complexity 1 100 0 448 186 4 18 chr1 3691759 3691980 -278501684 + GA-rich Low_complexity Low_complexity 1 218 0 318 143 0 0 chr1 3691987 3692050 -278501614 + (CA)n Simple_repeat Simple_repeat 2 64 0 2862 160 4 8 chr1 3692111 3692606 -278501058 + THE1-int LTR MaLR 891 1383 -197 439 218 224 36 chr1 3693455 3693622 -278500042 - MIR SINE MIR -63 145 4 621 322 108 43 chr1 3694729 3695512 -278498152 - L2 LINE L2 -2 3311 2580 4077 201 21 61 chr1 3695512 3696522 -278497142 + LTR5 LTR ERVK 1 969 0 621 322 108 43 chr1 3696522 3696540 -278497124 - L2 LINE L2 -733 2580 2565 2324 110 7 0 chr1 3696540 3696850 -278496814 + AluSx SINE Alu 1 312 0 621 322 108 43 chr1 3696850 3697000 -278496664 - L2 LINE L2 -748 2565 2300 2509 113 108 5 chr1 3697236 3697624 -278496040 - MSTA LTR MaLR 0 428 1 738 257 153 48 chr1 3697839 3698565 -278495099 - LTR1 LTR ERV1 0 826 28 347 291 35 57 chr1 3699204 3699345 -278494319 - L1ME4a LINE L1 0 6121 5984 1124 280 118 50 chr1 3699427 3700544 -278493120 + L1ME LINE L1 3337 4529 -1617 395 312 14 7 chr1 3700975 3701116 -278492548 + L1P5 LINE L1 5315 5456 -698 451 243 117 41 chr1 3701530 3701833 -278491831 + L1ME LINE L1 5483 5802 -360 2446 133 53 2 chr1 3701867 3702266 -278491398 - MSTA LTR MaLR 0 428 10 25 31 0 0 chr1 3702491 3702523 -278491141 + AT_rich Low_complexity Low_complexity 1 32 0 310 263 127 36 chr1 3703415 3703621 -278490043 - MIR SINE MIR -4 258 21 497 322 28 6 chr1 3703718 3703895 -278489769 + MIR SINE MIR 23 203 -59 420 330 35 20 chr1 3703969 3704172 -278489492 + MIR SINE MIR 20 225 -37 254 232 11 53 chr1 3705143 3705238 -278488426 + MIR SINE MIR 40 130 -132 426 219 36 36 chr1 3706580 3706734 -278486930 - L1ME2 LINE L1 -3 6232 6076 827 105 0 0 chr1 3706734 3706848 -278486816 - AluSg/x SINE Alu 0 309 196 6198 171 20 9 chr1 3706848 3708030 -278485634 + MSTA-int LTR MaLR 443 1651 0 2425 145 57 5 chr1 3708030 3708234 -278485430 + MSTA LTR MaLR 1 193 -235 243 0 0 0 chr1 3708234 3708261 -278485403 + (CCA)n Simple_repeat Simple_repeat 1 27 0 2425 145 57 5 chr1 3708261 3708463 -278485201 + MSTA LTR MaLR 193 428 0 2080 211 37 8 chr1 3708463 3708919 -278484745 - MER54A LTR ERVL -204 697 25 1710 215 78 82 chr1 3708941 3709706 -278483958 - L1ME2 LINE L1 -201 6030 5272 1965 256 28 50 chr1 3709708 3710353 -278483311 + L1ME1 LINE L1 5531 6161 -5 576 223 27 0 chr1 3710375 3710523 -278483141 - L1ME2 LINE L1 -1720 4495 4344 443 301 43 11 chr1 3710518 3710704 -278482960 - L1ME2 LINE L1 -4451 1945 1754 * 1403 277 133 63 chr1 3710720 3712057 -278481607 - L1ME2 LINE L1 -4740 1656 199 2547 57 6 25 chr1 3712057 3712374 -278481290 + AluY SINE Alu 1 311 0 1403 277 133 63 chr1 3712374 3712550 -278481114 - L1ME2 LINE L1 -6197 199 37 314 250 143 57 chr1 3712551 3712731 -278480933 + MIR SINE MIR 42 231 -31 247 308 56 28 chr1 3713015 3713122 -278480542 + L2 LINE L2 3196 3305 -8 938 206 58 84 chr1 3714391 3714468 -278479196 + MLT1D LTR MaLR 1 78 -427 2795 183 14 19 chr1 3714468 3714983 -278478681 + MLT2B2 LTR ERVL 1 512 -3 938 206 58 84 chr1 3714983 3715250 -278478414 + MLT1D LTR MaLR 78 336 -169 812 211 70 6 chr1 3715436 3715607 -278478057 + MLT1D LTR MaLR 324 505 0 2219 122 22 35 chr1 3716058 3716427 -278477237 + THE1B LTR MaLR 1 364 0 1115 156 0 0 chr1 3716518 3716698 -278476966 - L1MA1 LINE L1 0 6302 6123 224 288 12 6 chr1 3718042 3718161 -278475503 + MIR SINE MIR 110 229 -33 279 288 23 13 chr1 3718586 3718716 -278474948 - MIR SINE MIR -76 132 37 5864 186 29 20 chr1 3718858 3720302 -278473362 - L1MB3 LINE L1 -218 6201 4771 16463 141 23 16 chr1 3720302 3723002 -278470662 - Tigger2 DNA MER2_type 0 2718 1 5864 186 29 20 chr1 3723002 3725567 -278468097 - L1MB3 LINE L1 -1648 4771 994 2404 54 40 78 chr1 3725567 3725940 -278467724 - L1PA6 LINE L1 0 6154 5796 5864 186 29 20 chr1 3725940 3726941 -278466723 - L1MB3 LINE L1 -5425 994 3 6954 132 21 5 chr1 3727014 3728844 -278464820 - L1MA5 LINE L1 0 6300 4436 * 7928 191 12 4 chr1 3728827 3730427 -278463237 + L1 LINE L1 2235 3847 -2299 25 0 0 0 chr1 3730742 3730767 -278462897 + AT_rich Low_complexity Low_complexity 1 25 0 4213 123 41 8 chr1 3730794 3730938 -278462726 - L1MA6 LINE L1 0 6300 6162 2276 177 16 61 chr1 3730938 3731209 -278462455 + MER66B LTR ERV1 1 240 -246 1987 153 3 3 chr1 3731209 3731510 -278462154 + AluJb SINE Alu 9 309 -3 2276 177 16 61 chr1 3731510 3731747 -278461917 + MER66B LTR ERV1 240 486 0 4213 123 41 8 chr1 3731747 3732267 -278461397 - L1MA6 LINE L1 -138 6162 5614 200 162 0 0 chr1 3732584 3732621 -278461043 + L2 LINE L2 2941 2977 -336 314 224 61 41 chr1 3732796 3732894 -278460770 + L2 LINE L2 3211 3310 -3 1653 196 26 53 chr1 3733288 3733665 -278459999 - MLT1A2 LTR MaLR -7 367 1 408 263 99 29 chr1 3733673 3733844 -278459820 - MIR SINE MIR -48 214 32 1206 255 195 21 chr1 3734483 3735145 -278458519 + L2 LINE L2 1 777 -2537 578 260 143 11 chr1 3735199 3735599 -278458065 + MLT1F1 LTR MaLR 75 559 -8 324 182 0 15 chr1 3735611 3735677 -278457987 + MLT1F1-int LTR MaLR 5 69 -1302 201 227 171 0 chr1 3735680 3735768 -278457896 + L2 LINE L2 1255 1357 -1957 4188 101 3 0 chr1 3735925 3736499 -278457165 + LTR24B LTR ERV1 1 576 0 1220 281 85 47 chr1 3736837 3737332 -278456332 + MLT1G1 LTR MaLR 81 594 -1 2437 274 152 20 chr1 3737334 3738687 -278454977 + L2 LINE L2 773 2304 -1010 340 323 19 19 chr1 3738707 3738865 -278454799 + MER97c DNA MER1_type? 1 158 -932 2482 163 24 5 chr1 3738893 3739311 -278454353 - MSTA LTR MaLR 0 428 3 8571 155 65 37 chr1 3739313 3740919 -278452745 - MSTA-int LTR MaLR 0 1651 1 2861 119 24 5 chr1 3740919 3741339 -278452325 - MSTA LTR MaLR 0 428 1 463 312 183 10 chr1 3741345 3741842 -278451822 + L2 LINE L2 2360 2942 -372 251 308 47 47 chr1 3742304 3742476 -278451188 - MIR3 SINE MIR -15 193 22 213 207 138 35 chr1 3742738 3742825 -278450839 + L2 LINE L2 3177 3272 0 437 257 90 66 chr1 3744409 3744744 -278448920 - L1ME4a LINE L1 -1 6120 5778 192 248 124 29 chr1 3745123 3745228 -278448436 + MIR SINE MIR 29 143 -119 359 296 47 69 chr1 3745575 3745808 -278447856 - MLT1L LTR MaLR -33 582 355 2312 113 0 0 chr1 3746534 3746834 -278446830 - AluSg SINE Alu -9 301 2 276 261 8 75 chr1 3746912 3747046 -278446618 + MIR SINE MIR 10 134 -74 2156 132 0 3 chr1 3748041 3748352 -278445312 + AluSg SINE Alu 1 310 0 1517 176 13 33 chr1 3748792 3749056 -278444608 + MLT1B LTR MaLR 7 275 -115 2828 93 0 3 chr1 3749056 3749421 -278444243 + THE1B LTR MaLR 1 364 0 10656 102 25 40 chr1 3749421 3751026 -278442638 + THE1B-int LTR MaLR 1 1580 0 2670 113 3 3 chr1 3751026 3751390 -278442274 + THE1B LTR MaLR 1 364 0 1517 176 13 33 chr1 3751390 3751425 -278442239 + MLT1B LTR MaLR 272 302 -88 2369 146 54 10 chr1 3751473 3751878 -278441786 - MER83 LTR ERV1 -25 423 1 414 212 12 0 chr1 3751883 3751968 -278441696 + MLT1B LTR MaLR 305 390 0 1351 153 63 4 chr1 3752430 3752685 -278440979 - L1MA7 LINE L1 -1 6290 6021 548 278 9 52 chr1 3752743 3752973 -278440691 - L1MC5 LINE L1 -100 7861 7642 248 313 143 7 chr1 3753324 3753471 -278440193 - MER5B DNA MER1_type -6 172 6 441 0 0 0 chr1 3753529 3753578 -278440086 + (TG)n Simple_repeat Simple_repeat 2 50 0 505 309 98 5 chr1 3753815 3754009 -278439655 - MIR SINE MIR -4 258 47 2186 163 66 12 chr1 3754626 3755036 -278438628 + MSTB1 LTR MaLR 1 432 0 222 288 178 0 chr1 3755542 3755660 -278438004 - L2 LINE L2 0 3313 3175 198 286 163 32 chr1 3755786 3756038 -278437626 - L2 LINE L2 -558 2756 2472 241 254 18 0 chr1 3756877 3756932 -278436732 - LTR16B LTR ERVL 0 464 409 2251 211 33 21 chr1 3756974 3757485 -278436179 - MLT1E2 LTR MaLR -109 517 1 213 244 0 0 chr1 3757518 3757563 -278436101 - L2 LINE L2 -2 3311 3267 195 222 0 0 chr1 3757859 3757895 -278435769 - L3b LINE CR1 -17 1566 1531 282 179 0 0 chr1 3758424 3758480 -278435184 + CT-rich Low_complexity Low_complexity 1 56 0 321 312 263 0 chr1 3759317 3759522 -278434142 + MIR SINE MIR 3 261 -1 403 247 103 7 chr1 3760849 3760995 -278432669 - MER5A DNA MER1_type -29 160 1 526 250 60 24 chr1 3761006 3761174 -278432490 - MER5B DNA MER1_type -3 175 2 2006 197 50 10 chr1 3761617 3761849 -278431815 - MSTB LTR MaLR 0 426 170 1702 146 3 52 chr1 3761849 3762158 -278431506 - AluJb SINE Alu -18 294 1 2006 197 50 10 chr1 3762158 3762321 -278431343 - MSTB LTR MaLR -256 170 15 24 0 0 0 chr1 3764303 3764327 -278429337 + AT_rich Low_complexity Low_complexity 1 24 0 323 241 69 0 chr1 3764667 3764754 -278428910 - MLT1I LTR MaLR -2 407 315 849 221 10 28 chr1 3764795 3765105 -278428559 - MLT1A1 LTR MaLR 0 365 1 363 307 117 7 chr1 3765162 3765299 -278428365 - MLT1I LTR MaLR -191 218 67 2283 188 94 4 chr1 3766077 3766589 -278427075 - MER74A LTR ERVL 0 558 1 363 339 78 17 chr1 3767880 3768060 -278425604 - MIR SINE MIR -67 195 5 419 297 26 0 chr1 3769117 3769272 -278424392 + (TAGA)n Simple_repeat Simple_repeat 4 162 0 699 225 0 0 chr1 3769302 3769471 -278424193 + (CA)n Simple_repeat Simple_repeat 1 169 0 2435 60 0 3 chr1 3769568 3769869 -278423795 - AluY SINE Alu -11 300 1 430 263 20 0 chr1 3770118 3770217 -278423447 + L2 LINE L2 3212 3312 -1 965 26 52 26 chr1 3770346 3770693 -278422971 + (TCTA)n Simple_repeat Simple_repeat 1 356 0 802 105 47 0 chr1 3770721 3770893 -278422771 + (TCTA)n Simple_repeat Simple_repeat 1 180 0 375 367 6 6 chr1 3772039 3772216 -278421448 + (CA)n Simple_repeat Simple_repeat 1 177 0 1313 232 150 30 chr1 3772987 3773427 -278420237 + MLT1D LTR MaLR 13 505 0 2126 101 7 3 chr1 3777484 3777792 -278415872 - AluY SINE Alu -2 309 1 377 287 73 15 chr1 3777905 3778041 -278415623 + MER103 DNA DNA 2 145 -21 293 247 56 84 chr1 3778089 3778267 -278415397 + MER3 DNA MER1_type 32 204 -5 * 891 215 56 10 chr1 3778113 3778308 -278415356 - MER3 DNA MER1_type -5 204 1 389 299 52 61 chr1 3778453 3778684 -278414980 - MIR SINE MIR -3 259 31 356 276 26 9 chr1 3778737 3778853 -278414811 + MARNA DNA Mariner 311 428 -158 279 104 0 0 chr1 3779374 3779422 -278414242 + (TG)n Simple_repeat Simple_repeat 1 48 0 451 244 71 16 chr1 3779614 3779741 -278413923 + MER45B DNA AcHobo 4 137 -903 5179 106 3 4 chr1 3779741 3780518 -278413146 - L1PA13 LINE L1 -20 6143 5368 3453 213 44 7 chr1 3780518 3781273 -278412391 + MER45B DNA AcHobo 102 884 -156 276 203 0 0 chr1 3781321 3781380 -278412284 - MER45 DNA AcHobo -111 1470 1412 234 136 0 0 chr1 3781683 3781727 -278411937 + (TATG)n Simple_repeat Simple_repeat 3 46 0 676 145 22 17 chr1 3781734 3781913 -278411751 + (TGGA)n Simple_repeat Simple_repeat 1 180 0 517 194 29 0 chr1 3781935 3782110 -278411554 + (TGGA)n Simple_repeat Simple_repeat 1 180 0 525 262 0 21 chr1 3782131 3782272 -278411392 - L2 LINE L2 -14 3299 3162 284 238 38 86 chr1 3785414 3785519 -278408145 - MIR SINE MIR -157 105 6 299 371 74 25 chr1 3785546 3785829 -278407835 + L2 LINE L2 2976 3272 0 989 237 108 12 chr1 3786819 3787118 -278406546 + MLT1C LTR MaLR 6 355 -150 1965 122 91 28 chr1 3787126 3787478 -278406186 - THE1C LTR MaLR -1 374 1 503 242 53 52 chr1 3788274 3788580 -278405084 - MLT1H LTR MaLR -27 382 82 448 285 33 26 chr1 3789063 3789214 -278404450 + MIR SINE MIR 14 165 -97 242 279 99 36 chr1 3789576 3789687 -278403977 - MIR SINE MIR -73 135 18 215 308 205 8 chr1 3790398 3790515 -278403149 + MIR SINE MIR 42 181 -81 198 300 14 0 chr1 3790536 3790606 -278403058 + MIR SINE MIR 21 91 -171 210 37 0 0 chr1 3790978 3791005 -278402659 + (CAG)n Simple_repeat Simple_repeat 3 29 0 745 185 58 24 chr1 3791095 3791300 -278402364 - ORSL DNA AcHobo -20 255 44 254 198 26 129 chr1 3792651 3792767 -278400897 + L3 LINE CR1 1470 1573 -4 1428 209 102 40 chr1 3794384 3794805 -278398859 - MLT1C LTR MaLR 0 467 21 1926 81 0 0 chr1 3995503 3995751 -278197913 + AluY SINE Alu 63 310 -1 1487 178 33 49 chr1 3996572 3996600 -278197064 - AluJo SINE Alu -13 299 272 2146 105 3 7 chr1 3996600 3996904 -278196760 + AluSq SINE Alu 1 303 -10 1487 178 33 49 chr1 3996904 3997179 -278196485 - AluJo SINE Alu -40 272 1 594 283 88 26 chr1 3998562 3998788 -278194876 + MIR SINE MIR 2 241 -21 727 204 18 12 chr1 3999175 3999342 -278194322 - Charlie8 DNA MER1_type -2227 190 23 1721 154 0 11 chr1 4000217 4000502 -278193162 + AluJb SINE Alu 11 292 -20 21 0 0 0 chr1 4000502 4000523 -278193141 + AT_rich Low_complexity Low_complexity 1 21 0 264 252 96 96 chr1 4001710 4001845 -278191819 + L2 LINE L2 3134 3268 -4 393 296 69 20 chr1 4002220 4002467 -278191197 + L1ME3A LINE L1 5912 6170 0 41 36 0 0 chr1 4002997 4003052 -278190612 + GC_rich Low_complexity Low_complexity 1 55 0 21 82 0 0 chr1 4003071 4003120 -278190544 + GC_rich Low_complexity Low_complexity 1 49 0 265 255 40 13 chr1 4004144 4004239 -278189425 - MIR SINE MIR -62 146 88 509 303 35 7 chr1 4004477 4004674 -278188990 - MIR SINE MIR -24 238 33 474 234 123 47 chr1 4004734 4004905 -278188759 - MIR SINE MIR -69 193 10 1708 175 3 7 chr1 4005818 4005951 -278187713 + AluJb SINE Alu 1 133 -179 2397 96 0 0 chr1 4005951 4006263 -278187401 + AluSq SINE Alu 1 312 -1 1708 175 3 7 chr1 4006263 4006420 -278187244 + AluJb SINE Alu 133 290 -22 2105 110 0 14 chr1 4006422 4006714 -278186950 + AluSx SINE Alu 1 288 -24 447 301 63 42 chr1 4006725 4006964 -278186700 - MIR SINE MIR 0 262 19 336 286 98 0 chr1 4007004 4007116 -278186548 - L2 LINE L2 0 3313 3191 436 324 159 0 chr1 4007607 4007777 -278185887 + MIR SINE MIR 48 244 -18 280 355 48 18 chr1 4008161 4008327 -278185337 - MIR SINE MIR -3 259 89 489 297 207 8 chr1 4008377 4008633 -278185031 + L3 LINE CR1 1264 1570 -7 181 321 231 8 chr1 4010604 4010738 -278182926 - MIR3 SINE MIR -43 165 2 423 256 76 29 chr1 4012079 4012251 -278181413 + MIR SINE MIR 79 258 -4 508 344 111 26 chr1 4012485 4012910 -278180754 - L2 LINE L2 0 3313 2853 2061 134 3 7 chr1 4012983 4013290 -278180374 + AluSx SINE Alu 1 306 -6 411 106 0 0 chr1 4016412 4016478 -278177186 + (GGA)n Simple_repeat Simple_repeat 1 66 0 555 265 53 21 chr1 4016701 4016890 -278176774 + MER117 DNA MER1_type 3 197 0 2022 138 0 0 chr1 4018779 4019076 -278174588 - AluSx SINE Alu -15 297 1 205 283 104 38 chr1 4019088 4019194 -278174470 - MIR3 SINE MIR -49 159 47 24 53 0 0 chr1 4019341 4019379 -278174285 + GC_rich Low_complexity Low_complexity 1 38 0 24 32 0 0 chr1 4019386 4019417 -278174247 + GC_rich Low_complexity Low_complexity 1 31 0 218 200 0 67 chr1 4020240 4020315 -278173349 + GA-rich Low_complexity Low_complexity 1 70 0 585 134 31 10 chr1 4021524 4021621 -278172043 + FRAM SINE Alu 63 161 -15 35 41 0 0 chr1 4021621 4021670 -278171994 + AT_rich Low_complexity Low_complexity 1 49 0 2412 84 0 0 chr1 4021836 4022147 -278171517 - AluY SINE Alu 0 311 1 589 216 24 24 chr1 4022147 4022264 -278171400 - L2 LINE L2 -5 3308 3189 201 338 27 68 chr1 4023075 4023223 -278170441 - L2 LINE L2 -56 3216 3075 458 223 16 0 chr1 4026050 4026172 -278167492 + MER33 DNA MER1_type 1 119 -97 1015 155 6 0 chr1 4026172 4026333 -278167331 - AluJb SINE Alu -16 296 135 2342 83 0 0 chr1 4026333 4026633 -278167031 - AluSx SINE Alu -12 300 1 2174 117 0 7 chr1 4026644 4026943 -278166721 - AluSx SINE Alu -15 297 1 2304 94 0 0 chr1 4027086 4027385 -278166279 + AluSq SINE Alu 1 299 -14 2066 108 14 0 chr1 4027385 4027672 -278165992 + AluSq SINE Alu 1 292 -21 837 179 7 0 chr1 4027672 4027812 -278165852 - FLAM_C SINE Alu -2 141 1 863 172 29 5 chr1 4027813 4028022 -278165642 + MER33 DNA MER1_type 111 324 0 1346 143 0 19 chr1 4030549 4030765 -278162899 - AluJo SINE Alu -16 296 85 1992 133 0 0 chr1 4031224 4031539 -278162125 + AluSx SINE Alu 3 317 0 502 303 143 6 chr1 4031568 4031743 -278161921 + MIR SINE MIR 49 247 -15 873 266 70 73 chr1 4032061 4032347 -278161317 - L2 LINE L2 -275 3038 2752 2137 103 3 10 chr1 4032347 4032649 -278161015 - AluSc SINE Alu -9 300 1 441 36 0 0 chr1 4032651 4032706 -278160958 + (TTTA)n Simple_repeat Simple_repeat 2 56 0 2029 76 36 4 chr1 4032706 4032981 -278160683 - AluSp SINE Alu -29 284 1 873 266 70 73 chr1 4032981 4033281 -278160383 - L2 LINE L2 -560 2753 2451 1793 123 27 41 chr1 4033288 4033580 -278160084 + AluJb SINE Alu 11 298 -14 225 206 0 73 chr1 4033584 4033652 -278160012 + L1MC4 LINE L1 7169 7231 -811 680 168 0 35 chr1 4033654 4033689 -278159975 - AluSx SINE Alu -144 168 133 2095 109 7 3 chr1 4033689 4033983 -278159681 - AluSx SINE Alu -16 296 2 680 168 0 35 chr1 4033983 4034060 -278159604 - AluSx SINE Alu -179 133 60 232 224 165 0 chr1 4034060 4034145 -278159519 + L1MC4 LINE L1 7234 7332 -710 460 299 226 6 chr1 4034189 4034320 -278159344 + L1MC4 LINE L1 7436 7537 -505 1817 159 10 3 chr1 4034320 4034615 -278159049 + AluJb SINE Alu 1 297 -15 460 299 226 6 chr1 4034615 4034645 -278159019 + L1MC4 LINE L1 7537 7559 -483 2602 45 0 0 chr1 4034645 4034955 -278158709 + AluY SINE Alu 1 310 -1 460 299 226 6 chr1 4034955 4035287 -278158377 + L1MC4 LINE L1 7559 8039 -3 2350 87 0 10 chr1 4035289 4035601 -278158063 + AluSx SINE Alu 3 311 -1 510 240 77 60 chr1 4035628 4035762 -278157902 - L2 LINE L2 -1481 1833 1703 1745 136 93 0 chr1 4035762 4036041 -278157623 + AluJb SINE Alu 1 305 -7 2190 101 0 13 chr1 4036047 4036355 -278157309 + AluSg SINE Alu 1 304 -6 510 240 77 60 chr1 4036355 4036446 -278157218 - L2 LINE L2 -1615 1699 1597 1185 153 5 0 chr1 4037292 4037481 -278156183 + AluJb SINE Alu 117 306 -6 220 303 40 13 chr1 4037575 4037651 -278156013 - MIR SINE MIR -79 183 106 2098 125 0 7 chr1 4037737 4038041 -278155623 + AluSx SINE Alu 1 302 -10 215 231 197 51 chr1 4041542 4041659 -278152005 - L2 LINE L2 -184 3088 2955 267 401 40 9 chr1 4042376 4042603 -278151061 + MIR SINE MIR 14 247 -15 238 245 101 57 chr1 4044036 4044195 -278149469 + L2 LINE L2 2941 3106 -166 219 191 11 149 chr1 4044332 4044392 -278149272 + L2 LINE L2 3191 3235 -37 2246 105 0 3 chr1 4044392 4044698 -278148966 + AluSx SINE Alu 1 305 -7 219 191 11 149 chr1 4044698 4044731 -278148933 + L2 LINE L2 3235 3271 -1 216 284 145 41 chr1 4044747 4044886 -278148778 - MIR SINE MIR -47 161 13 * 430 151 32 32 chr1 4044884 4044977 -278148687 + MER5A DNA MER1_type 14 106 -83 1694 83 0 13 chr1 4045162 4045392 -278148272 + AluSg/x SINE Alu 83 309 -1 221 294 0 33 chr1 4047178 4047270 -278146394 + GA-rich Low_complexity Low_complexity 2 90 0 208 200 46 0 chr1 4048198 4048263 -278145401 - MIR SINE MIR -86 122 55 210 150 0 0 chr1 4048588 4048628 -278145036 + (CGG)n Simple_repeat Simple_repeat 1 40 0 211 256 12 12 chr1 4048695 4048777 -278144887 + (CGGG)n Simple_repeat Simple_repeat 4 85 0 23 0 0 0 chr1 4050250 4050273 -278143391 + GC_rich Low_complexity Low_complexity 1 23 0 264 221 39 0 chr1 4051756 4051833 -278141831 + G-rich Low_complexity Low_complexity 5 84 0 183 80 0 0 chr1 4052465 4052490 -278141174 + (TG)n Simple_repeat Simple_repeat 1 25 0 262 214 274 8 chr1 4053163 4053280 -278140384 + MIR3 SINE MIR 45 192 -16 347 262 78 30 chr1 4054223 4054362 -278139302 + MIR SINE MIR 31 174 -34 2035 106 34 10 chr1 4054397 4054689 -278138975 - AluSq SINE Alu -14 299 1 2406 73 0 3 chr1 4054697 4054998 -278138666 - AluSc SINE Alu -9 300 1 2237 87 0 17 chr1 4054998 4055297 -278138367 - AluSc SINE Alu -15 294 1 203 368 23 0 chr1 4055313 4055400 -278138264 + MIR SINE MIR 173 261 -1 267 285 277 13 chr1 4055477 4055712 -278137952 - L3 LINE CR1 -1 1576 1280 206 253 32 0 chr1 4056408 4056472 -278137192 + MIR SINE MIR 103 145 -63 22 35 0 0 chr1 4056744 4056773 -278136891 + GC_rich Low_complexity Low_complexity 1 29 0 306 215 16 33 chr1 4057016 4057137 -278136527 + (CCCCG)n Simple_repeat Simple_repeat 2 120 0 2211 70 18 3 chr1 4057567 4057851 -278135813 - AluSg SINE Alu -20 290 3 200 298 58 87 chr1 4057977 4058185 -278135479 + L2 LINE L2 2976 3177 -95 496 209 58 68 chr1 4058191 4058382 -278135282 - MER53 DNA DNA 0 189 1 2182 128 0 0 chr1 4058450 4058756 -278134908 - AluSx SINE Alu -6 306 1 193 211 115 0 chr1 4058907 4058959 -278134705 - MIR SINE MIR -137 125 68 209 352 63 42 chr1 4059133 4059275 -278134389 + MIR SINE MIR 100 244 -18 180 243 0 0 chr1 4060436 4060473 -278133191 + MIR SINE MIR 218 254 -8 1597 173 0 7 chr1 4060796 4061110 -278132554 + AluJo SINE Alu 18 312 0 623 320 104 0 chr1 4061166 4061388 -278132276 - MIR SINE MIR -1 261 17 183 309 140 51 chr1 4061589 4061767 -278131897 + MIR SINE MIR 51 244 -18 181 332 138 37 chr1 4062575 4062843 -278130821 + L2 LINE L2 2874 3168 -145 188 291 89 25 chr1 4063044 4063123 -278130541 - MIR SINE MIR -89 119 36 2090 87 21 10 chr1 4063383 4063671 -278129993 + AluSx SINE Alu 1 291 -21 257 270 167 29 chr1 4063682 4063886 -278129778 - L2 LINE L2 -195 3118 2887 1128 148 0 0 chr1 4063959 4064128 -278129536 - AluSg/x SINE Alu -10 300 132 2112 126 0 3 chr1 4064129 4064423 -278129241 - AluSg SINE Alu -17 293 1 2325 91 0 3 chr1 4064436 4064744 -278128920 - AluSg SINE Alu -2 308 2 221 231 0 62 chr1 4065564 4065629 -278128035 - MIR SINE MIR -86 122 62 489 236 36 0 chr1 4065662 4065772 -278127892 + L2 LINE L2 3155 3268 -4 205 250 33 0 chr1 4065773 4065833 -278127831 + MIR SINE MIR 130 191 -71 2151 97 6 67 chr1 4065875 4066259 -278127405 - AluSx SINE Alu 0 364 1 1373 92 5 0 chr1 4066787 4066972 -278126692 - AluSp SINE Alu -3 310 125 216 0 0 0 chr1 4068467 4068491 -278125173 + (TCCC)n Simple_repeat Simple_repeat 1 24 0 373 278 157 15 chr1 4071490 4071757 -278121907 + L2 LINE L2 2740 3046 -267 23 33 0 0 chr1 4072426 4072456 -278121208 + GC_rich Low_complexity Low_complexity 1 30 0 213 39 0 0 chr1 4072852 4072878 -278120786 + (CCCCG)n Simple_repeat Simple_repeat 1 26 0 21 36 0 0 chr1 4072894 4072922 -278120742 + GC_rich Low_complexity Low_complexity 1 28 0 241 260 0 27 chr1 4073191 4073264 -278120400 - L2 LINE L2 -339 2975 2905 344 266 64 138 chr1 4074703 4074844 -278118820 - MIR SINE MIR -11 251 101 2474 74 3 0 chr1 4074844 4075154 -278118510 - AluY SINE Alu 0 311 1 2054 119 0 42 chr1 4075156 4075466 -278118198 - AluSq SINE Alu -16 297 1 344 266 64 138 chr1 4075466 4075524 -278118140 - MIR SINE MIR -162 100 64 231 344 0 21 chr1 4076330 4076426 -278117238 + MIR SINE MIR 158 251 -11 197 400 0 0 chr1 4077076 4077181 -278116483 + MIR SINE MIR 30 134 -74 180 0 0 0 chr1 4077606 4077626 -278116038 + (CGGGG)n Simple_repeat Simple_repeat 2 21 0 246 260 14 0 chr1 4078609 4078682 -278114982 + C-rich Low_complexity Low_complexity 2 75 0 2118 89 32 0 chr1 4079702 4079983 -278113681 + AluSx SINE Alu 1 290 -22 190 319 154 0 chr1 4080446 4080537 -278113127 + L2 LINE L2 3151 3255 -17 2171 110 3 0 chr1 4081508 4081809 -278111855 + AluSx SINE Alu 1 302 -10 933 168 19 47 chr1 4082153 4082367 -278111297 - Tigger1 DNA MER2_type -2210 208 1 1804 132 28 24 chr1 4082370 4082658 -278111006 - AluJo SINE Alu -23 289 1 180 179 0 0 chr1 4082806 4082845 -278110819 + (TG)n Simple_repeat Simple_repeat 2 40 0 2176 100 0 0 chr1 4083325 4083636 -278110028 + AluSg SINE Alu 1 311 0 1101 123 0 0 chr1 4083670 4083824 -278109840 + AluSq SINE Alu 3 156 -157 1970 145 3 0 chr1 4083833 4084123 -278109541 + AluSx SINE Alu 7 297 -15 303 238 132 17 chr1 4084124 4084251 -278109413 - MER69 DNA AcHobo 0 2526 2385 291 238 0 0 chr1 4084638 4084701 -278108963 - HERV16 LTR ERVL -2465 2531 2469 766 163 0 92 chr1 4084702 4084865 -278108799 + L1MB3 LINE L1 5966 6142 -41 2577 40 0 0 chr1 4084865 4085168 -278108496 + AluY SINE Alu 1 303 -8 1889 160 0 3 chr1 4085178 4085472 -278108192 + AluJo SINE Alu 1 293 -19 766 163 0 92 chr1 4085472 4085487 -278108177 + L1MB3 LINE L1 6151 6166 -17 2169 123 0 0 chr1 4085487 4085788 -278107876 - AluSq SINE Alu -12 301 1 766 163 0 92 chr1 4085788 4085836 -278107828 + L1MB3 LINE L1 6166 6182 -1 1806 263 141 3 chr1 4085857 4086587 -278107077 - HERV16 LTR ERVL -2536 2460 1630 2002 128 3 16 chr1 4086618 4086923 -278106741 + AluSx SINE Alu 1 301 -11 320 119 0 0 chr1 4087001 4087063 -278106601 - L1MA4 LINE L1 -120 6183 6119 1370 207 24 24 chr1 4087074 4087269 -278106395 - AluJo SINE Alu -1 311 114 2525 61 0 0 chr1 4087269 4087580 -278106084 + AluY SINE Alu 1 311 0 1370 207 24 24 chr1 4087580 4087679 -278105985 - AluJo SINE Alu -197 115 17 1720 164 31 0 chr1 4087757 4088049 -278105615 + AluJb SINE Alu 1 301 -11 1362 241 23 10 chr1 4088052 4088446 -278105218 + L1M4 LINE L1 2445 2843 -3303 672 172 78 0 chr1 4088448 4088564 -278105100 + AluSq SINE Alu 11 135 -177 1417 130 0 5 chr1 4088565 4088780 -278104884 + AluSq SINE Alu 95 308 -5 1184 131 11 0 chr1 4088805 4088988 -278104676 + AluSq SINE Alu 129 313 0 461 241 0 71 chr1 4088991 4089048 -278104616 + L1M4 LINE L1 2814 2873 -3273 2084 114 3 3 chr1 4089048 4089346 -278104318 - AluSp SINE Alu -15 298 1 461 241 0 71 chr1 4089346 4089500 -278104164 + L1M4 LINE L1 2873 3010 -3136 2152 103 3 3 chr1 4089500 4089792 -278103872 - AluSx SINE Alu -14 298 7 2292 94 7 0 chr1 4089847 4090154 -278103510 + AluSp SINE Alu 5 313 0 419 132 26 13 chr1 4090184 4090282 -278103382 + AluJ/FRAM SINE Alu 232 312 0 1060 129 0 2 chr1 4090288 4090544 -278103120 + AluSx SINE Alu 1 303 -9 642 238 86 0 chr1 4090546 4090815 -278102849 + L1M4 LINE L1 3052 3343 -2803 2004 122 3 35 chr1 4090818 4091129 -278102535 + AluSx SINE Alu 1 301 -11 2297 98 10 0 chr1 4091134 4091440 -278102224 + AluY SINE Alu 1 309 -2 253 271 0 0 chr1 4091461 4091531 -278102133 + L1ME3A LINE L1 5784 5853 -317 428 250 43 43 chr1 4091535 4091699 -278101965 + L1ME3A LINE L1 5971 6134 -36 287 226 0 0 chr1 4091763 4091816 -278101848 + L2 LINE L2 3208 3260 -12 730 304 26 7 chr1 4091859 4092103 -278101561 - MIR SINE MIR -13 249 3 2405 21 0 3 chr1 4092827 4093160 -278100504 - AluY SINE Alu 0 332 1 1935 148 0 13 chr1 4093466 4093769 -278099895 + AluJb SINE Alu 1 299 -13 2225 84 3 17 chr1 4093769 4094068 -278099596 + AluSp SINE Alu 1 295 -18 1408 145 161 0 chr1 4094095 4094350 -278099314 - AluJb SINE Alu -2 300 5 1772 156 0 34 chr1 4094849 4095026 -278098638 - AluJo SINE Alu -2 310 147 2235 73 0 33 chr1 4095026 4095328 -278098336 - AluY SINE Alu -13 298 7 1772 156 0 34 chr1 4095328 4095471 -278098193 - AluJo SINE Alu -165 147 1 1946 126 13 13 chr1 4095772 4096081 -278097583 + AluY SINE Alu 1 309 -2 932 126 0 0 chr1 4096416 4096559 -278097105 - AluSg/x SINE Alu 0 312 170 663 73 0 0 chr1 4096566 4096648 -278097016 - AluY SINE Alu -15 296 215 2402 76 0 0 chr1 4096706 4097010 -278096654 - AluY SINE Alu -7 304 1 1128 188 31 5 chr1 4097057 4097280 -278096384 + AluJb SINE Alu 1 229 -83 2043 121 3 0 chr1 4097280 4097569 -278096095 - AluSg SINE Alu -20 290 1 2373 76 0 0 chr1 4097599 4097900 -278095764 - AluY SINE Alu -10 301 1 1521 251 147 37 chr1 4098035 4098816 -278094848 - L2 LINE L2 -6 3307 2613 2119 121 0 0 chr1 4098816 4099121 -278094543 + AluSx SINE Alu 1 305 -7 1521 251 147 37 chr1 4099121 4099137 -278094527 - L2 LINE L2 -700 2613 2600 1707 141 52 21 chr1 4099137 4099428 -278094236 + AluJo SINE Alu 1 300 -12 1521 251 147 37 chr1 4099428 4099831 -278093833 - L2 LINE L2 -713 2600 1723 894 181 75 0 chr1 4100313 4100473 -278093191 - FAM SINE Alu -3 172 1 218 297 148 0 chr1 4100654 4100716 -278092948 - MIR SINE MIR -76 186 135 1790 171 0 16 chr1 4100716 4101032 -278092632 + AluJb SINE Alu 1 311 -1 218 297 148 0 chr1 4101032 4101070 -278092594 - MIR SINE MIR -127 135 71 850 97 0 0 chr1 4101178 4101291 -278092373 + AluSq/x SINE Alu 3 115 -198 4336 117 222 81 chr1 4101292 4102514 -278091150 + pTR5 LTR ERV1 276 2295 -143 817 217 18 24 chr1 4102535 4102693 -278090971 + FRAM SINE Alu 1 159 -143 2528 61 0 0 chr1 4102693 4103004 -278090660 + AluY SINE Alu 1 311 0 27 73 0 0 chr1 4104063 4104118 -278089546 + GC_rich Low_complexity Low_complexity 1 55 0 27 29 0 0 chr1 4104458 4104492 -278089172 + GC_rich Low_complexity Low_complexity 1 34 0 21 0 0 0 chr1 4104515 4104536 -278089128 + GC_rich Low_complexity Low_complexity 1 21 0 222 369 31 41 chr1 4105733 4105928 -278087736 - MIR SINE MIR -50 212 20 2120 96 0 23 chr1 4106067 4106369 -278087295 - AluSx SINE Alu -17 295 1 1529 82 0 0 chr1 4106377 4106572 -278087092 - AluSx SINE Alu -117 195 1 2171 89 7 0 chr1 4106627 4106932 -278086732 - AluSx SINE Alu 0 307 1 2147 113 0 3 chr1 4106996 4107297 -278086367 - AluSx SINE Alu -12 300 1 1395 113 39 18 chr1 4107782 4108011 -278085653 - AluSg/x SINE Alu -1 309 76 252 188 150 50 chr1 4108012 4108092 -278085572 + MER3 DNA MER1_type 121 208 -1 216 342 54 27 chr1 4108347 4108458 -278085206 + L2 LINE L2 3200 3313 0 2403 65 0 10 chr1 4108520 4108829 -278084835 - AluY SINE Alu -5 306 1 2157 103 7 3 chr1 4108829 4109129 -278084535 - AluSx SINE Alu -11 301 1 2285 73 0 3 chr1 4109177 4109477 -278084187 + AluY SINE Alu 1 299 -12 1408 83 0 0 chr1 4109478 4109658 -278084006 + AluSq SINE Alu 134 313 0 345 279 35 64 chr1 4110094 4110266 -278083398 + L1MC5 LINE L1 7536 7702 -259 412 277 207 24 chr1 4110267 4110480 -278083184 - L1ME1 LINE L1 -5 6161 5910 432 312 68 17 chr1 4110645 4110693 -278082971 + L1MC5 LINE L1 7625 7669 -292 1557 184 6 32 chr1 4110693 4111008 -278082656 - AluJb SINE Alu -1 311 5 432 312 68 17 chr1 4111008 4111251 -278082413 + L1MC5 LINE L1 7669 7931 -30 513 214 8 26 chr1 4112635 4112752 -278080912 - L1MB8 LINE L1 -9 6169 6055 827 231 12 12 chr1 4112776 4112949 -278080715 + MER21B LTR ERV1 39 211 -652 260 196 71 0 chr1 4112960 4113016 -278080648 + MER21B LTR ERV1 693 752 -111 1920 211 14 10 chr1 4113078 4113504 -278080160 - L1MB8 LINE L1 -532 5642 5220 988 173 9 91 chr1 4113521 4113582 -278080082 + AluJo SINE Alu 86 150 -162 2320 78 0 0 chr1 4113582 4113877 -278079787 + AluY SINE Alu 1 295 -16 988 173 9 91 chr1 4113877 4114046 -278079618 + AluJo SINE Alu 150 297 -15 2436 61 0 0 chr1 4114099 4114396 -278079268 + AluY SINE Alu 1 297 -14 2128 114 3 0 chr1 4114407 4114713 -278078951 + AluSq SINE Alu 1 307 -6 1454 166 37 24 chr1 4114760 4115056 -278078608 - AluJb SINE Alu -12 300 1 2211 71 27 3 chr1 4115157 4115454 -278078210 - AluSc SINE Alu -5 304 1 2226 50 0 14 chr1 4115455 4115733 -278077931 - AluY SINE Alu -37 274 1 2669 165 35 4 chr1 4115734 4116243 -278077421 - L1MB3 LINE L1 -355 5828 5304 280 295 19 0 chr1 4116278 4116383 -278077281 + (TA)n Simple_repeat Simple_repeat 1 107 0 2349 185 45 38 chr1 4116429 4116460 -278077204 - L1MB3 LINE L1 -840 5306 5277 453 76 38 13 chr1 4116460 4116539 -278077125 - L1MA5 LINE L1 0 6300 6220 2349 185 45 38 chr1 4116539 4116975 -278076689 - L1MB3 LINE L1 -869 5277 4878 2030 99 44 7 chr1 4116975 4117268 -278076396 - AluSg SINE Alu -6 304 1 2349 185 45 38 chr1 4117268 4117489 -278076175 - L1MB3 LINE L1 -1268 4878 4660 1637 156 22 19 chr1 4117531 4117801 -278075863 - AluSx SINE Alu -41 271 1 366 188 4 127 chr1 4117801 4117832 -278075832 - L1MB8 LINE L1 -1094 5052 5019 1667 159 7 21 chr1 4117832 4118121 -278075543 + AluJo SINE Alu 9 293 -19 366 188 4 127 chr1 4118121 4118225 -278075439 - L1MB8 LINE L1 -1127 5019 4931 2380 61 3 0 chr1 4118392 4118686 -278074978 + AluY SINE Alu 1 295 -16 270 0 0 0 chr1 4119488 4119518 -278074146 + (TTTG)n Simple_repeat Simple_repeat 2 31 0 2172 73 0 0 chr1 4119522 4119797 -278073867 - AluY SINE Alu -36 275 1 935 126 0 22 chr1 4120197 4120332 -278073332 - FLAM_C SINE Alu -1 132 1 1802 153 3 0 chr1 4120384 4120672 -278072992 - L1MC/D LINE L1 -732 5612 5324 33 0 0 0 chr1 4120692 4120725 -278072939 + AT_rich Low_complexity Low_complexity 1 33 0 1206 130 42 28 chr1 4120754 4120839 -278072825 - AluSq SINE Alu -95 218 136 2164 100 7 0 chr1 4120839 4121139 -278072525 - AluSq SINE Alu -11 302 1 1394 169 9 123 chr1 4121148 4121302 -278072362 - AluJb SINE Alu -12 290 120 2062 113 0 10 chr1 4121302 4121612 -278072052 - AluSq SINE Alu -5 308 2 1394 169 9 123 chr1 4121612 4121632 -278072032 - AluJb SINE Alu -182 120 99 2392 60 0 7 chr1 4121632 4121931 -278071733 - AluY SINE Alu -14 297 1 1394 169 9 123 chr1 4121931 4122081 -278071583 - AluJb SINE Alu -203 99 2 1206 130 42 28 chr1 4122081 4122200 -278071464 - AluSq SINE Alu -184 129 1 618 186 12 43 chr1 4122200 4122302 -278071362 - L1MC/D LINE L1 -847 5299 5202 2274 38 52 0 chr1 4122302 4122590 -278071074 - AluY SINE Alu -8 303 1 618 186 12 43 chr1 4122590 4122648 -278071016 - L1MC/D LINE L1 -944 5202 5144 188 224 20 0 chr1 4122871 4122920 -278070744 - MIR SINE MIR -61 147 98 234 217 72 0 chr1 4123581 4123664 -278070000 - L1MA10 LINE L1 -1 6333 6245 8895 115 20 51 chr1 4123664 4123703 -278069961 + Tigger1 DNA MER2_type 1 40 -2378 2270 100 0 0 chr1 4123703 4124003 -278069661 - AluSq SINE Alu -13 300 1 8895 115 20 51 chr1 4124003 4124035 -278069629 + Tigger1 DNA MER2_type 40 71 -2347 2127 102 3 3 chr1 4124035 4124329 -278069335 + AluSx SINE Alu 1 294 -18 8895 115 20 51 chr1 4124329 4124736 -278068928 + Tigger1 DNA MER2_type 71 489 -1929 1958 119 20 3 chr1 4124736 4125031 -278068633 + AluSx SINE Alu 1 300 -12 8895 115 20 51 chr1 4125031 4125520 -278068144 + Tigger1 DNA MER2_type 489 992 -1426 2098 132 0 0 chr1 4125520 4125823 -278067841 - AluSx SINE Alu -9 303 1 8895 115 20 51 chr1 4125823 4125924 -278067740 + Tigger1 DNA MER2_type 992 1095 -1323 2119 110 3 13 chr1 4125924 4126223 -278067441 + AluSx SINE Alu 1 296 -16 8895 115 20 51 chr1 4126223 4126477 -278067187 + Tigger1 DNA MER2_type 1095 1355 -1063 2263 105 0 0 chr1 4126477 4126782 -278066882 + AluSg SINE Alu 1 305 -5 8895 115 20 51 chr1 4126782 4126793 -278066871 + Tigger1 DNA MER2_type 1355 1365 -1053 2039 112 0 11 chr1 4126793 4127132 -278066532 + AluSx SINE Alu 1 336 0 8895 115 20 51 chr1 4127132 4127219 -278066445 + Tigger1 DNA MER2_type 1365 1379 -1039 2317 169 49 5 chr1 4127219 4127627 -278066037 - MSTB1 LTR MaLR -4 428 3 8895 115 20 51 chr1 4127627 4127724 -278065940 + Tigger1 DNA MER2_type 1379 1478 -940 1905 126 0 7 chr1 4127726 4128012 -278065652 + AluY SINE Alu 21 304 -7 1208 140 0 0 chr1 4128012 4128191 -278065473 + AluSg/x SINE Alu 132 310 0 520 159 71 26 chr1 4128191 4128304 -278065360 + Tigger1 DNA MER2_type 1471 1588 -830 1796 135 56 7 chr1 4128305 4128593 -278065071 + AluSx SINE Alu 1 302 -10 406 134 0 0 chr1 4128593 4128660 -278065004 + Tigger1 DNA MER2_type 1828 1894 -524 254 276 0 0 chr1 4128660 4128718 -278064946 + MER52A LTR ERV1 1 58 -1697 195 232 0 0 chr1 4128725 4128781 -278064883 + (CAG)n Simple_repeat Simple_repeat 2 57 0 5402 171 158 6 chr1 4129224 4130303 -278063361 + MER52A LTR ERV1 512 1755 0 2531 113 33 141 chr1 4130303 4130371 -278063293 + Tigger1 DNA MER2_type 1889 1963 -455 2336 70 0 3 chr1 4130371 4130669 -278062995 - AluY SINE Alu -14 297 1 2531 113 33 141 chr1 4130669 4130699 -278062965 + Tigger1 DNA MER2_type 1963 1995 -423 1491 106 13 13 chr1 4130699 4130926 -278062738 + AluSc SINE Alu 67 293 -16 2531 113 33 141 chr1 4130926 4130978 -278062686 + Tigger1 DNA MER2_type 1995 2051 -367 1753 169 0 13 chr1 4130978 4131285 -278062379 - AluJo SINE Alu -9 303 1 2531 113 33 141 chr1 4131285 4131414 -278062250 + Tigger1 DNA MER2_type 2051 2192 -226 2055 88 7 4 chr1 4131414 4131687 -278061977 + AluSx SINE Alu 25 298 -14 2531 113 33 141 chr1 4131687 4131802 -278061862 + Tigger1 DNA MER2_type 2192 2202 -216 2352 65 3 0 chr1 4131802 4132095 -278061569 - AluY SINE Alu -14 297 4 2531 113 33 141 chr1 4132095 4132291 -278061373 + Tigger1 DNA MER2_type 2202 2418 0 630 248 95 25 chr1 4132300 4132542 -278061122 - L1ME1 LINE L1 -88 6078 5820 1198 112 0 0 chr1 4132542 4132712 -278060952 - AluSq SINE Alu -10 303 134 2474 65 0 0 chr1 4132712 4133018 -278060646 - AluSc SINE Alu -3 306 1 2090 108 3 7 chr1 4133029 4133326 -278060338 - AluSx SINE Alu -16 296 1 844 181 0 0 chr1 4133383 4133516 -278060148 - FLAM_C SINE Alu 0 133 1 784 143 71 0 chr1 4133516 4133642 -278060022 - AluJb SINE Alu -24 288 154 7251 61 41 2 chr1 4133678 4133957 -278059707 - LTR13 LTR ERVK -13 994 727 204 40 0 0 chr1 4133957 4133982 -278059682 + (GA)n Simple_repeat Simple_repeat 2 26 0 7251 61 41 2 chr1 4133982 4134659 -278059005 - LTR13 LTR ERVK -280 727 1 754 178 0 22 chr1 4134683 4134818 -278058846 - FLAM_C SINE Alu -1 132 1 2320 98 0 0 chr1 4135132 4135437 -278058227 - AluSx SINE Alu -7 305 1 1627 154 20 29 chr1 4135763 4136069 -278057595 - AluSx SINE Alu -9 303 1 1906 236 38 11 chr1 4136082 4136135 -278057529 - L1MB7 LINE L1 -8 6176 6124 923 328 49 21 chr1 4136135 4136608 -278057056 - L1MD3 LINE L1 -1867 6128 5643 2255 92 0 7 chr1 4139417 4139723 -278053941 + AluSx SINE Alu 1 304 -8 2184 99 7 0 chr1 4140335 4140629 -278053035 - AluSp SINE Alu -17 296 1 2180 95 0 7 chr1 4140653 4140949 -278052715 - AluSg SINE Alu -16 294 1 260 212 50 10 chr1 4141086 4141185 -278052479 + (GGCTG)n Simple_repeat Simple_repeat 4 106 0 708 215 85 22 chr1 4141374 4141597 -278052067 - MLT1C LTR MaLR -225 242 6 250 348 82 15 chr1 4142122 4142392 -278051272 - L1ME1 LINE L1 -1981 5827 5540 311 317 145 0 chr1 4143120 4143341 -278050323 + L2 LINE L2 2834 3086 -186 2097 134 0 7 chr1 4143928 4144235 -278049429 - AluSx SINE Alu -6 306 2 816 163 0 0 chr1 4144252 4144381 -278049283 - AluJb SINE Alu -15 297 169 1886 137 58 0 chr1 4144424 4144717 -278048947 + AluSx SINE Alu 1 310 -2 1763 52 39 4 chr1 4144765 4144995 -278048669 + AluY SINE Alu 63 300 -11 204 211 0 0 chr1 4145203 4145241 -278048423 + GA-rich Low_complexity Low_complexity 2 39 0 356 279 29 0 chr1 4146640 4146744 -278046920 - MIR SINE MIR -97 165 59 1657 198 36 33 chr1 4148802 4149166 -278044498 - MLT1A1 LTR MaLR 0 365 1 309 135 0 0 chr1 4149221 4149273 -278044391 + (TG)n Simple_repeat Simple_repeat 1 52 0 470 276 24 86 chr1 4149698 4149795 -278043869 - MIR SINE MIR -12 250 171 2192 120 0 7 chr1 4149795 4150103 -278043561 - AluSx SINE Alu -6 306 1 470 276 24 86 chr1 4150103 4150215 -278043449 - MIR SINE MIR -91 171 54 988 293 123 22 chr1 4150538 4151202 -278042462 + L2 LINE L2 2293 3025 -288 1738 165 0 4 chr1 4151207 4151480 -278042184 + AluJb SINE Alu 24 295 -17 414 369 7 0 chr1 4151706 4151855 -278041809 - MIR SINE MIR -19 243 94 505 277 144 5 chr1 4152040 4152242 -278041422 - MIR SINE MIR -36 226 8 2387 90 0 0 chr1 4152792 4153102 -278040562 - AluSg SINE Alu 0 310 1 237 264 94 28 chr1 4154175 4154281 -278039383 - MER5A DNA MER1_type -19 170 58 310 372 25 0 chr1 4154793 4154914 -278038750 + L1ME4a LINE L1 5647 5770 -2038 988 159 6 24 chr1 4154958 4155128 -278038536 + FAM SINE Alu 5 171 -4 1793 170 38 57 chr1 4155191 4155561 -278038103 + MLT1A1 LTR MaLR 2 364 -1 2459 55 0 0 chr1 4155833 4156125 -278037539 - AluY SINE Alu -19 292 1 2127 105 31 0 chr1 4156153 4156439 -278037225 + AluSx SINE Alu 1 295 -17 2131 122 0 0 chr1 4156528 4156832 -278036832 - AluSx SINE Alu -8 304 1 451 238 98 0 chr1 4157018 4157140 -278036524 + L1ME4a LINE L1 5965 6098 -23 2362 52 0 3 chr1 4157320 4157637 -278036027 + AluY SINE Alu 1 316 0 278 45 159 0 chr1 4157637 4157681 -278035983 + AluSc SINE Alu 130 180 -119 1256 53 0 0 chr1 4157695 4157846 -278035818 + AluYa8 SINE Alu 148 298 -12 266 340 57 0 chr1 4158268 4158374 -278035290 - MIR SINE MIR -70 192 81 2057 104 0 78 chr1 4159558 4159893 -278033771 - AluSx SINE Alu -3 309 1 189 171 0 0 chr1 4160095 4160130 -278033534 + (TGAA)n Simple_repeat Simple_repeat 1 35 0 223 328 0 0 chr1 4160823 4160887 -278032777 + L2 LINE L2 3247 3310 -3 2034 95 44 7 chr1 4161227 4161521 -278032143 - AluSg SINE Alu -5 305 1 1829 126 30 43 chr1 4162077 4162233 -278031431 - AluJb SINE Alu -14 298 146 2430 62 13 0 chr1 4162233 4162537 -278031127 - AluSp SINE Alu -5 308 1 1829 126 30 43 chr1 4162537 4162681 -278030983 - AluJb SINE Alu -166 146 2 463 265 37 7 chr1 4162743 4162879 -278030785 + MIR3 SINE MIR 69 208 0 2402 70 0 19 chr1 4164715 4165051 -278028613 - AluY SINE Alu 0 331 2 540 300 91 11 chr1 4166002 4166388 -278027276 - MLT1C LTR MaLR -6 461 6 285 221 0 26 chr1 4167415 4167492 -278026172 + (CATATA)n Simple_repeat Simple_repeat 3 77 0 254 29 29 0 chr1 4167497 4167532 -278026132 + (CA)n Simple_repeat Simple_repeat 2 37 0 183 42 0 0 chr1 4168882 4168906 -278024758 + (TTTA)n Simple_repeat Simple_repeat 1 24 0 2001 86 0 70 chr1 4168906 4169207 -278024457 - AluSx SINE Alu -32 280 1 2248 97 3 0 chr1 4169514 4169822 -278023842 + AluSc SINE Alu 1 309 0 2135 121 0 19 chr1 4170627 4170942 -278022722 - AluSx SINE Alu -3 309 1 2341 76 0 0 chr1 4172168 4172469 -278021195 - AluY SINE Alu -10 301 1 584 214 68 24 chr1 4172688 4172871 -278020793 + MLT1D LTR MaLR 28 200 -190 297 0 0 0 chr1 4173815 4173848 -278019816 + (TA)n Simple_repeat Simple_repeat 1 33 0 2335 89 3 0 chr1 4173848 4174150 -278019514 - AluSx SINE Alu -9 303 1 2300 106 3 0 chr1 4174426 4174737 -278018927 - AluSq SINE Alu -1 312 1 1976 152 76 19 chr1 4174772 4175140 -278018524 + MLT1B LTR MaLR 2 390 0 2138 78 42 0 chr1 4175784 4176067 -278017597 + AluY SINE Alu 1 295 -16 339 294 132 47 chr1 4176944 4177240 -278016424 + MLT1J1 LTR MaLR 126 446 0 502 314 118 4 chr1 4177339 4177568 -278016096 - MIR SINE MIR -6 256 2 2138 132 0 0 chr1 4178093 4178389 -278015275 + AluSx SINE Alu 1 296 -16 1951 120 7 7 chr1 4179230 4179521 -278014143 + AluJo SINE Alu 1 291 -21 2380 94 0 0 chr1 4179554 4179863 -278013801 + AluSx SINE Alu 1 309 -3 263 243 0 75 chr1 4180484 4180591 -278013073 + L2 LINE L2 2933 3031 -241 2081 108 0 17 chr1 4180770 4181058 -278012606 - AluSx SINE Alu -29 283 1 2450 67 0 13 chr1 4181802 4182116 -278011548 - AluY SINE Alu -1 310 1 33 0 0 0 chr1 4183172 4183205 -278010459 + AT_rich Low_complexity Low_complexity 1 33 0 327 284 99 12 chr1 4183527 4183689 -278009975 - HAL1 LINE L1 -652 1855 1680 304 289 30 52 chr1 4183734 4183869 -278009795 - MLT1J LTR MaLR -54 457 326 278 298 36 0 chr1 4184525 4184609 -278009055 - MER5A DNA MER1_type -89 100 14 600 97 11 0 chr1 4184732 4184818 -278008846 - L1MA1 LINE L1 -4 6298 6209 2067 136 0 13 chr1 4184818 4185128 -278008536 + AluSx SINE Alu 1 306 -6 198 103 0 0 chr1 4185137 4185166 -278008498 + (GGGA)n Simple_repeat Simple_repeat 4 32 0 1209 130 9 9 chr1 4185174 4185389 -278008275 - L1MA1 LINE L1 -82 6220 6006 349 288 29 58 chr1 4185602 4185741 -278007923 + MER5B DNA MER1_type 15 149 -29 394 258 57 98 chr1 4186484 4186548 -278007116 - MER5A DNA MER1_type -1 188 123 2093 139 0 13 chr1 4186548 4186864 -278006800 + AluSx SINE Alu 1 312 0 394 258 57 98 chr1 4186864 4186993 -278006671 - MER5A DNA MER1_type -66 123 3 229 350 90 11 chr1 4187278 4187455 -278006209 + L2 LINE L2 2086 2276 -1038 462 298 77 80 chr1 4187807 4188159 -278005505 + L1M4 LINE L1 2775 3125 -3021 319 219 134 0 chr1 4190151 4190233 -278003431 + L2 LINE L2 3179 3271 -1 185 256 116 35 chr1 4190364 4190450 -278003214 - L2 LINE L2 -8 3264 3172 9376 15 3 251 chr1 4191349 4193192 -278000472 + SVA Other Other 1 1386 0 240 111 0 0 chr1 4193232 4193268 -278000396 + (T)n Simple_repeat Simple_repeat 1 36 0 283 342 114 63 chr1 4195133 4195657 -277998007 - L3 LINE CR1 -114 1463 913 204 67 0 0 chr1 4195941 4195971 -277997693 + (TTCA)n Simple_repeat Simple_repeat 1 30 0 192 250 171 0 chr1 4195972 4196048 -277997616 - L2 LINE L2 -14 3258 3170 252 319 96 24 chr1 4196555 4196721 -277996943 + MIR SINE MIR 1 178 -84 257 106 0 21 chr1 4197873 4197920 -277995744 + (CA)n Simple_repeat Simple_repeat 2 47 0 180 0 0 0 chr1 4197925 4197945 -277995719 + (TC)n Simple_repeat Simple_repeat 2 21 0 241 376 31 25 chr1 4198345 4198507 -277995157 - MIR SINE MIR -59 203 41 2151 121 0 0 chr1 4199153 4199450 -277994214 + AluSx SINE Alu 3 299 -13 271 319 93 24 chr1 4199687 4200018 -277993646 - L1MC5 LINE L1 -60 7901 7516 2073 123 3 0 chr1 4200248 4200540 -277993124 + AluSx SINE Alu 1 293 -19 343 238 0 0 chr1 4200594 4200674 -277992990 - MER116 DNA Mariner 0 80 1 832 153 0 36 chr1 4200710 4200847 -277992817 + FLAM_C SINE Alu 2 133 0 2286 93 0 3 chr1 4200863 4201165 -277992499 + AluSg SINE Alu 1 301 -9 2416 216 68 27 chr1 4201335 4201393 -277992271 - L1MB8 LINE L1 -5 6173 6119 1587 171 42 3 chr1 4201393 4201679 -277991985 + AluJo SINE Alu 1 297 -15 2416 216 68 27 chr1 4201679 4202314 -277991350 - L1MB8 LINE L1 -59 6119 5452 972 218 0 35 chr1 4203872 4204074 -277989590 - AluJo SINE Alu -17 295 101 2499 65 0 0 chr1 4204397 4204706 -277988958 + AluY SINE Alu 1 309 -2 1112 135 5 16 chr1 4204726 4204919 -277988745 + AluSg/x SINE Alu 120 310 0 875 261 52 41 chr1 4206054 4206418 -277987246 - MLT1C LTR MaLR -41 426 59 1284 239 156 5 chr1 4207261 4207692 -277985972 - MLT1D LTR MaLR -3 502 7 663 191 8 46 chr1 4207758 4207909 -277985755 + FLAM_A SINE Alu 2 133 0 1516 136 107 18 chr1 4207912 4208184 -277985480 + AluJb SINE Alu 1 296 -16 2420 77 0 0 chr1 4208186 4208498 -277985166 + AluSx SINE Alu 1 312 0 422 367 58 22 chr1 4210073 4210299 -277983365 - MIR SINE MIR -28 234 1 1138 58 0 0 chr1 4210500 4210637 -277983027 + AluY SINE Alu 1 137 -174 367 243 126 10 chr1 4210964 4211067 -277982597 - MIR SINE MIR -123 139 25 2335 94 3 0 chr1 4212983 4213291 -277980373 - AluSq SINE Alu -4 309 1 1132 153 0 0 chr1 4213574 4213744 -277979920 - AluJb SINE Alu -13 299 130 1700 171 7 14 chr1 4214122 4214415 -277979249 + AluSx SINE Alu 3 293 -19 207 329 130 49 chr1 4215845 4216091 -277977573 + L3 LINE CR1 1301 1566 -11 181 308 33 0 chr1 4217905 4217996 -277975668 - L2 LINE L2 -216 3056 2963 192 286 198 0 chr1 4219330 4219456 -277974208 + L2 LINE L2 2912 3062 -251 469 257 71 0 chr1 4219551 4219691 -277973973 + MIR SINE MIR 35 184 -78 293 305 109 56 chr1 4219720 4220077 -277973587 - L2 LINE L2 -96 3217 2842 2157 89 48 0 chr1 4221842 4222135 -277971529 - AluSg SINE Alu -3 307 1 232 207 17 35 chr1 4225306 4225319 -277968345 - L2 LINE L2 -1 3271 3259 237 65 0 0 chr1 4225319 4225350 -277968314 + (TTCA)n Simple_repeat Simple_repeat 1 31 0 232 207 17 35 chr1 4225350 4225394 -277968270 - L2 LINE L2 -13 3259 3215 514 234 27 24 chr1 4228352 4228515 -277965149 + MIR SINE MIR 25 183 -67 934 241 92 3 chr1 4229324 4229619 -277964045 - L1MB8 LINE L1 0 6178 5858 190 298 123 0 chr1 4229649 4229706 -277963958 - MIR SINE MIR -73 189 126 249 33 0 0 chr1 4230094 4230124 -277963540 + (CAGG)n Simple_repeat Simple_repeat 1 30 0 410 239 246 0 chr1 4231026 4231168 -277962496 + MER5A DNA MER1_type 13 189 0 298 219 0 14 chr1 4231969 4232042 -277961622 + MER94 DNA DNA 44 115 -19 223 185 93 0 chr1 4234670 4234724 -277958940 + MIR SINE MIR 40 98 -164 234 217 33 0 chr1 4235735 4235795 -277957869 + GA-rich Low_complexity Low_complexity 1 62 0 181 245 20 0 chr1 4236079 4236128 -277957536 + L2 LINE L2 3015 3064 -208 237 146 0 0 chr1 4236348 4236396 -277957268 + (CGGA)n Simple_repeat Simple_repeat 4 51 0 40 123 0 0 chr1 4236408 4236700 -277956964 + GC_rich Low_complexity Low_complexity 1 292 0 277 341 78 8 chr1 4238108 4238237 -277955427 + MIR SINE MIR 12 149 -113 1835 163 0 3 chr1 4238313 4238607 -277955057 - AluJb SINE Alu -19 293 1 2163 77 49 3 chr1 4239157 4239443 -277954221 + AluSq SINE Alu 1 299 -14 229 250 44 0 chr1 4240711 4240779 -277952885 - MLT1A1 LTR MaLR -1 456 386 820 174 0 8 chr1 4240784 4240916 -277952748 + FLAM_A SINE Alu 1 131 -2 2010 127 10 16 chr1 4240916 4241230 -277952434 + AluSx SINE Alu 1 312 0 347 274 11 11 chr1 4241266 4241361 -277952303 - MLT1A1 LTR MaLR -86 279 185 1689 155 3 46 chr1 4241491 4241635 -277952029 + AluJo SINE Alu 1 127 -185 2244 107 3 3 chr1 4241635 4241943 -277951721 + AluSg SINE Alu 1 308 -2 1689 155 3 46 chr1 4241943 4242101 -277951563 + AluJo SINE Alu 127 290 -22 2197 69 4 0 chr1 4242110 4242384 -277951280 + AluY SINE Alu 22 296 -15 238 111 89 0 chr1 4242437 4242482 -277951182 - MLT1A1 LTR MaLR -378 50 2 411 273 81 9 chr1 4243930 4244078 -277949586 - MIR SINE MIR -37 171 46 2101 113 3 25 chr1 4244156 4244476 -277949188 - AluSq SINE Alu 0 313 1 395 336 14 2 chr1 4245290 4245429 -277948235 - MIR SINE MIR -63 145 31 225 239 30 60 chr1 4245555 4245622 -277948042 + MIR SINE MIR 83 147 -115 889 176 13 0 chr1 4245625 4245778 -277947886 + FRAM SINE Alu 1 154 -22 360 244 136 29 chr1 4246642 4246849 -277946815 - MIR SINE MIR -21 241 3 213 259 19 44 chr1 4247848 4248006 -277945658 + C-rich Low_complexity Low_complexity 1 154 0 27 29 0 0 chr1 4248130 4248164 -277945500 + GC_rich Low_complexity Low_complexity 1 34 0 204 266 65 0 chr1 4248795 4248868 -277944796 + MIR3 SINE MIR 107 185 -23 21 0 0 0 chr1 4252234 4252255 -277941409 + GC_rich Low_complexity Low_complexity 1 21 0 527 120 0 43 chr1 4252504 4252621 -277941043 + (GGGGA)n Simple_repeat Simple_repeat 2 113 0 297 154 0 0 chr1 4252818 4252870 -277940794 - FLAM SINE Alu -25 108 57 30 0 0 0 chr1 4255100 4255130 -277938534 + GC_rich Low_complexity Low_complexity 1 30 0 28 29 0 0 chr1 4255177 4255212 -277938452 + GC_rich Low_complexity Low_complexity 1 35 0 258 32 0 0 chr1 4256695 4256726 -277936938 + (A)n Simple_repeat Simple_repeat 1 31 0 2393 90 0 0 chr1 4257553 4257863 -277935801 + AluSg SINE Alu 1 310 0 1147 142 0 0 chr1 4259000 4259176 -277934488 + FRAM SINE Alu 1 175 -1 254 239 115 53 chr1 4259227 4259340 -277934324 - MIR SINE MIR -115 147 28 273 173 55 100 chr1 4259814 4259835 -277933829 - L1ME4a LINE L1 -9 6112 6092 2275 78 3 7 chr1 4259835 4260130 -277933534 + AluSq SINE Alu 1 294 -19 273 173 55 100 chr1 4260130 4260218 -277933446 - L1ME4a LINE L1 -29 6092 6008 737 156 14 71 chr1 4260218 4260359 -277933305 + FLAM_C SINE Alu 1 133 0 2315 48 17 3 chr1 4260509 4260801 -277932863 + AluY SINE Alu 1 296 -15 2221 85 0 3 chr1 4261024 4261318 -277932346 - AluSx SINE Alu -19 293 1 23 33 0 0 chr1 4261461 4261491 -277932173 + GC_rich Low_complexity Low_complexity 1 30 0 21 100 0 0 chr1 4261637 4261707 -277931957 + GC_rich Low_complexity Low_complexity 1 70 0 41 0 0 0 chr1 4261874 4261915 -277931749 + GC_rich Low_complexity Low_complexity 1 41 0 540 277 106 0 chr1 4262319 4262486 -277931178 - MIR SINE MIR -45 217 35 1956 90 0 97 chr1 4263412 4263752 -277929912 + AluSg SINE Alu 2 310 0 2320 65 7 3 chr1 4264432 4264726 -277928938 + AluSg SINE Alu 1 295 -15 2141 116 3 0 chr1 4264738 4265031 -277928633 + AluSq SINE Alu 1 294 -19 331 216 41 0 chr1 4265721 4265818 -277927846 - L1MB7 LINE L1 0 6184 6084 802 171 0 14 chr1 4266016 4266156 -277927508 - FLAM_C SINE Alu 0 143 6 1292 196 117 7 chr1 4266385 4266666 -277926998 - AluJo SINE Alu 0 312 1 2227 96 0 26 chr1 4266666 4266978 -277926686 - AluY SINE Alu -7 304 1 1613 116 6 84 chr1 4266978 4267191 -277926473 - AluJo SINE Alu -8 304 121 1916 149 0 0 chr1 4267191 4267467 -277926197 + AluSx SINE Alu 21 296 -16 1613 116 6 84 chr1 4267467 4267564 -277926100 - AluJo SINE Alu -191 121 18 918 162 0 0 chr1 4267574 4267722 -277925942 + AluSg/x SINE Alu 155 302 -8 369 0 0 0 chr1 4267761 4267802 -277925862 + (TG)n Simple_repeat Simple_repeat 2 42 0 687 172 41 41 chr1 4267803 4267948 -277925716 - AluJb SINE Alu 0 312 168 1605 141 4 38 chr1 4267948 4268076 -277925588 - AluSx SINE Alu -51 261 145 2279 99 3 6 chr1 4268076 4268389 -277925275 - AluSp SINE Alu -1 312 1 1605 141 4 38 chr1 4268389 4268522 -277925142 - AluSx SINE Alu -167 145 9 2132 112 0 19 chr1 4268527 4268841 -277924823 - AluSx SINE Alu -4 308 1 998 162 134 69 chr1 4268885 4268944 -277924720 + AluJo SINE Alu 37 91 -221 2405 82 0 0 chr1 4268944 4269247 -277924417 + AluY SINE Alu 1 303 -8 998 162 134 69 chr1 4269247 4269434 -277924230 + AluJo SINE Alu 91 299 -13 1227 206 14 0 chr1 4269482 4269700 -277923964 - AluJo SINE Alu -91 221 1 2471 66 0 3 chr1 4269707 4270012 -277923652 - AluY SINE Alu -7 304 1 229 302 203 0 chr1 4270377 4270569 -277923095 + MER112 DNA MER1_type 8 238 -22 455 288 107 42 chr1 4270617 4270711 -277922953 + MIR SINE MIR 19 105 -157 781 200 0 0 chr1 4270711 4270841 -277922823 + FLAM_A SINE Alu 1 130 -3 455 288 107 42 chr1 4270841 4270961 -277922703 + MIR SINE MIR 105 247 -15 2033 118 7 3 chr1 4271177 4271473 -277922191 - AluSx SINE Alu -15 297 1 1424 158 22 0 chr1 4271501 4271723 -277921941 + AluJb SINE Alu 71 297 -15 429 340 63 0 chr1 4273790 4273949 -277919715 + MIR SINE MIR 50 218 -44 2214 104 0 3 chr1 4274179 4274487 -277919177 + AluSg SINE Alu 1 307 -3 2201 72 7 30 chr1 4275142 4275447 -277918217 - AluSx SINE Alu -14 298 1 2192 93 0 10 chr1 4277488 4277788 -277915876 + AluSp SINE Alu 1 297 -16 2341 76 3 3 chr1 4277792 4278096 -277915568 + AluSq SINE Alu 1 304 -9 206 297 54 0 chr1 4279663 4279737 -277913927 - L2 LINE L2 -333 2939 2862 1078 294 123 24 chr1 4279865 4280421 -277913243 - L2 LINE L2 -718 2596 2096 1812 164 17 0 chr1 4280421 4280719 -277912945 + AluJb SINE Alu 1 303 -9 2268 62 0 33 chr1 4280719 4281025 -277912639 + AluSc SINE Alu 1 297 -12 1078 294 123 24 chr1 4281025 4281167 -277912497 - L2 LINE L2 -1217 2097 1828 471 237 7 65 chr1 4281618 4281757 -277911907 + HAL1 LINE L1 772 902 -1605 1055 96 13 13 chr1 4281762 4281918 -277911746 + AluSg/x SINE Alu 140 295 -17 365 216 126 32 chr1 4281922 4282112 -277911552 + HAL1 LINE L1 902 1109 -1398 896 134 0 8 chr1 4282119 4282253 -277911411 + FLAM_C SINE Alu 1 133 0 2254 103 6 0 chr1 4282258 4282569 -277911095 + AluSp SINE Alu 1 313 0 1429 228 89 48 chr1 4282574 4282659 -277911005 + HAL1 LINE L1 1195 1275 -1232 2135 99 26 7 chr1 4282659 4282962 -277910702 + AluSc SINE Alu 1 309 0 1647 96 0 0 chr1 4282967 4283187 -277910477 + AluSg/x SINE Alu 85 304 -8 1429 228 89 48 chr1 4283187 4283600 -277910064 + HAL1 LINE L1 1278 1720 -787 305 98 0 0 chr1 4284097 4284148 -277909516 - AluSx SINE Alu 0 302 252 1450 107 0 0 chr1 4284150 4284347 -277909317 - AluSx SINE Alu -115 197 1 196 260 62 73 chr1 4285834 4285930 -277907734 + MER5B DNA MER1_type 22 116 -62 269 262 80 91 chr1 4287817 4288004 -277905660 + L2 LINE L2 3015 3199 -73 24 0 0 0 chr1 4288202 4288226 -277905438 + GC_rich Low_complexity Low_complexity 1 24 0 216 180 0 40 chr1 4288862 4288912 -277904752 - MIR SINE MIR -114 148 101 2037 89 43 0 chr1 4288979 4289260 -277904404 + AluSx SINE Alu 1 293 -19 203 247 136 25 chr1 4289843 4289924 -277903740 + MIR SINE MIR 57 146 -62 226 297 10 40 chr1 4290581 4290682 -277902982 + MIR SINE MIR 46 143 -65 1987 66 80 0 chr1 4291835 4292109 -277901555 + AluSx SINE Alu 1 296 -16 283 253 72 0 chr1 4292261 4292344 -277901320 + MIR SINE MIR 36 124 -84 1570 130 123 4 chr1 4292760 4293029 -277900635 - AluJb SINE Alu -11 301 1 186 71 0 0 chr1 4293029 4293057 -277900607 + (T)n Simple_repeat Simple_repeat 1 28 0 698 152 0 9 chr1 4293095 4293207 -277900457 - FLAM_C SINE Alu -32 111 1 2347 57 10 3 chr1 4293313 4293609 -277900055 - AluY SINE Alu -13 298 1 2451 62 3 0 chr1 4293708 4294012 -277899652 - AluSp SINE Alu -8 305 1 205 282 0 24 chr1 4294054 4294139 -277899525 - MIR SINE MIR -30 232 150 183 275 0 0 chr1 4294253 4294293 -277899371 - L2 LINE L2 -3 3310 3271 1577 103 117 72 chr1 4294393 4294528 -277899136 + AluSx SINE Alu 1 128 -184 2291 94 0 7 chr1 4294528 4294837 -277898827 + AluSg SINE Alu 1 307 -3 1577 103 117 72 chr1 4294837 4294991 -277898673 + AluSx SINE Alu 128 303 -9 225 283 100 29 chr1 4295059 4295115 -277898549 - L2 LINE L2 -236 3036 2985 1871 160 3 7 chr1 4295115 4295421 -277898243 + AluJo SINE Alu 1 305 -7 225 283 100 29 chr1 4295421 4295571 -277898093 - L2 LINE L2 -287 2985 2817 200 159 23 45 chr1 4295571 4295659 -277898005 + G-rich Low_complexity Low_complexity 1 86 0 1832 148 9 28 chr1 4295856 4295988 -277897676 + AluJo SINE Alu 1 134 -178 180 0 0 0 chr1 4295988 4296008 -277897656 + (CAAAA)n Simple_repeat Simple_repeat 1 20 0 1832 148 9 28 chr1 4296008 4296193 -277897471 + AluJo SINE Alu 134 312 0 227 331 117 7 chr1 4296194 4296280 -277897384 - L2 LINE L2 -1914 1400 1325 1046 182 0 0 chr1 4296280 4296445 -277897219 + FRAM SINE Alu 1 165 -1 227 331 117 7 chr1 4296445 4296512 -277897152 - L2 LINE L2 -1989 1325 1230 743 184 209 8 chr1 4296512 4297020 -277896644 - LTR50 LTR ERVL -2 793 29 243 291 55 27 chr1 4297080 4297190 -277896474 - L2 LINE L2 -2194 1120 1008 431 262 29 0 chr1 4297257 4297360 -277896304 + MER5A DNA MER1_type 4 109 -80 205 300 0 0 chr1 4297400 4297470 -277896194 - L2 LINE L2 -2392 922 853 227 282 94 0 chr1 4297473 4297558 -277896106 - L2 LINE L2 -2731 583 491 2141 107 0 7 chr1 4300256 4300556 -277893108 + AluSg SINE Alu 1 298 -12 2205 119 0 0 chr1 4301493 4301805 -277891859 - AluSp SINE Alu -1 312 1 2018 147 3 6 chr1 4301806 4302118 -277891546 - AluSx SINE Alu -1 311 1 2333 80 0 7 chr1 4302121 4302422 -277891242 - AluY SINE Alu -12 299 1 1995 91 4 0 chr1 4302427 4302692 -277890972 - AluY SINE Alu -8 303 38 1671 183 21 3 chr1 4302692 4302981 -277890683 - AluJo SINE Alu -18 294 1 181 271 125 88 chr1 4303009 4303201 -277890463 - MIR3 SINE MIR -1 207 9 1952 123 7 0 chr1 4303359 4303644 -277890020 - AluJb SINE Alu -7 305 19 1206 202 39 62 chr1 4303835 4303963 -277889701 + AluJb SINE Alu 1 130 -172 2288 74 7 0 chr1 4303963 4304262 -277889402 + AluSp SINE Alu 1 301 -12 1206 202 39 62 chr1 4304262 4304440 -277889224 + AluJb SINE Alu 130 300 -2 2053 121 0 3 chr1 4304873 4305170 -277888494 - AluSx SINE Alu -16 296 1 1729 176 14 3 chr1 4305239 4305535 -277888129 + AluJo SINE Alu 1 299 -13 2147 120 0 3 chr1 4305570 4305870 -277887794 - AluSx SINE Alu -13 299 1 985 118 0 40 chr1 4305870 4305883 -277887781 - AluSq/x SINE Alu -167 146 134 2470 50 0 25 chr1 4305883 4306200 -277887464 - AluY SINE Alu -2 309 1 2318 78 3 10 chr1 4306200 4306508 -277887156 - AluSg SINE Alu -4 306 1 985 118 0 40 chr1 4306508 4306645 -277887019 - AluSq/x SINE Alu -177 136 1 2049 87 7 0 chr1 4306933 4307210 -277886454 + AluSp SINE Alu 27 305 -8 2219 98 0 3 chr1 4307643 4307948 -277885716 - AluSq SINE Alu -9 304 1 925 165 24 0 chr1 4308007 4308171 -277885493 - AluJo SINE Alu -10 302 135 2272 51 20 7 chr1 4308501 4308793 -277884871 + AluSp SINE Alu 2 297 -16 26 0 0 0 chr1 4309026 4309052 -277884612 + AT_rich Low_complexity Low_complexity 1 26 0 891 135 0 0 chr1 4309052 4309178 -277884486 - AluJo SINE Alu -186 126 1 1495 164 95 4 chr1 4309254 4309528 -277884136 + AluSx SINE Alu 1 299 -13 2147 123 0 0 chr1 4309943 4310253 -277883411 - AluY SINE Alu -1 310 1 2129 117 7 0 chr1 4310256 4310554 -277883110 - AluSx SINE Alu -6 306 7 2224 78 7 20 chr1 4314635 4314941 -277878723 - AluSx SINE Alu -10 302 1 1962 81 23 55 chr1 4315218 4315528 -277878136 + AluSc SINE Alu 1 300 -9 40 59 0 0 chr1 4317673 4317741 -277875923 + GC_rich Low_complexity Low_complexity 1 68 0 29 90 0 0 chr1 4317869 4317947 -277875717 + GC_rich Low_complexity Low_complexity 1 78 0 377 270 157 36 chr1 4319483 4319885 -277873779 + L2 LINE L2 2495 3030 -283 750 180 0 0 chr1 4319945 4320067 -277873597 - FLAM_A SINE Alu -7 126 5 591 290 55 19 chr1 4320703 4320939 -277872725 + MIR SINE MIR 10 256 -6 226 204 59 13 chr1 4321560 4321712 -277871952 + (TCCA)n Simple_repeat Simple_repeat 4 162 0 439 231 18 0 chr1 4321735 4321904 -277871760 + (TCCA)n Simple_repeat Simple_repeat 4 175 0 716 127 42 0 chr1 4321961 4322126 -277871538 + (TCCA)n Simple_repeat Simple_repeat 4 175 0 989 98 44 10 chr1 4322137 4323223 -277870441 + (TCCA)n Simple_repeat Simple_repeat 1 1300 0 269 236 0 28 chr1 4323298 4323370 -277870294 + (TCTCTG)n Simple_repeat Simple_repeat 5 74 0 234 301 0 72 chr1 4323325 4323518 -277870146 + CT-rich Low_complexity Low_complexity 1 179 0 * 283 309 73 8 chr1 4323924 4324047 -277869617 - MIR SINE MIR -37 225 95 2524 50 0 0 chr1 4324182 4324484 -277869180 + AluY SINE Alu 1 302 -9 280 264 27 73 chr1 4324971 4325081 -277868583 + MIR SINE MIR 43 147 -115 771 173 87 7 chr1 4325081 4325256 -277868408 + AluJb SINE Alu 121 307 0 237 200 33 33 chr1 4327435 4327495 -277866169 + MIR SINE MIR 39 98 -164 2138 126 7 0 chr1 4328539 4328848 -277864816 - AluSx SINE Alu 0 312 2 226 287 50 69 chr1 4330002 4330103 -277863561 - MIR SINE MIR -46 216 118 390 318 60 7 chr1 4330194 4330345 -277863319 - MIR SINE MIR -70 192 34 248 269 39 62 chr1 4330698 4330828 -277862836 - L2 LINE L2 -539 2775 2649 204 252 48 19 chr1 4332505 4332608 -277861056 + (TCTCTG)n Simple_repeat Simple_repeat 1 106 0 255 304 0 39 chr1 4332649 4332751 -277860913 + CT-rich Low_complexity Low_complexity 4 101 0 2227 107 3 16 chr1 4335169 4335486 -277858178 - AluSp SINE Alu 0 313 1 290 253 55 55 chr1 4335530 4335640 -277858024 - MIR SINE MIR -63 145 39 260 330 0 22 chr1 4336394 4336485 -277857179 + CT-rich Low_complexity Low_complexity 2 90 0 239 284 0 12 chr1 4338147 4338228 -277855436 + GA-rich Low_complexity Low_complexity 1 80 0 288 0 0 0 chr1 4338326 4338358 -277855306 + (TG)n Simple_repeat Simple_repeat 1 32 0 2129 72 11 18 chr1 4338358 4338555 -277855109 - AluSc SINE Alu -33 276 80 2716 16 0 0 chr1 4338555 4338860 -277854804 - AluYa5 SINE Alu -6 305 1 2129 72 11 18 chr1 4338860 4338940 -277854724 - AluSc SINE Alu -229 80 1 496 200 157 0 chr1 4338942 4339057 -277854607 - FLAM_A SINE Alu -9 133 1 236 235 94 0 chr1 4339546 4339631 -277854033 - MER113 DNA MER1_type? -419 102 10 510 260 164 11 chr1 4340498 4340675 -277852989 - MIR SINE MIR -8 254 51 2180 118 3 0 chr1 4341027 4341331 -277852333 - AluSx SINE Alu -7 305 1 192 125 0 0 chr1 4342796 4342828 -277850836 + (CGG)n Simple_repeat Simple_repeat 3 34 0 261 0 0 0 chr1 4343729 4343758 -277849906 + (TTTTG)n Simple_repeat Simple_repeat 1 29 0 2122 82 0 7 chr1 4343758 4344039 -277849625 - AluSx SINE Alu -33 279 1 313 326 36 22 chr1 4344852 4344990 -277848674 + MIR SINE MIR 58 197 -65 195 220 0 0 chr1 4345174 4345224 -277848440 + (TG)n Simple_repeat Simple_repeat 2 51 0 313 270 14 0 chr1 4345332 4345406 -277848258 + MIR3 SINE MIR 114 188 -20 326 370 110 37 chr1 4345897 4346224 -277847440 - L2 LINE L2 -5 3267 2917 200 170 43 21 chr1 4346925 4346972 -277846692 + CT-rich Low_complexity Low_complexity 4 51 0 1109 145 15 4 chr1 4346976 4347958 -277845706 + (TCCA)n Simple_repeat Simple_repeat 1 1171 0 195 42 0 0 chr1 4347967 4347991 -277845673 + (TTCC)n Simple_repeat Simple_repeat 3 26 0 227 293 0 0 chr1 4348508 4348590 -277845074 + GA-rich Low_complexity Low_complexity 3 84 0 23 33 0 0 chr1 4348741 4348771 -277844893 + GC_rich Low_complexity Low_complexity 1 30 0 359 237 93 10 chr1 4349096 4349193 -277844471 - MIR SINE MIR -63 145 41 243 266 16 0 chr1 4349443 4349507 -277844157 + (TG)n Simple_repeat Simple_repeat 2 66 0 203 270 149 0 chr1 4349868 4349942 -277843722 - MIR SINE MIR -65 143 59 465 297 65 19 chr1 4351761 4351916 -277841748 - MIR SINE MIR -90 172 11 198 234 169 13 chr1 4352272 4352349 -277841315 + MIR SINE MIR 4 92 -170 217 183 24 122 chr1 4353215 4353297 -277840367 + MIR SINE MIR 62 135 -73 1731 130 87 0 chr1 4354253 4354529 -277839135 + AluJo SINE Alu 1 300 -12 533 333 78 19 chr1 4354597 4354918 -277838746 - L2 LINE L2 -2 3270 2931 1134 217 120 69 chr1 4355614 4355952 -277837712 - MLT1C LTR MaLR -2 465 146 210 37 0 0 chr1 4355952 4355979 -277837685 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 1686 141 7 4 chr1 4355983 4356252 -277837412 - AluSx SINE Alu -42 270 1 1906 122 7 10 chr1 4356259 4356584 -277837080 - AluSx SINE Alu 0 324 1 306 0 0 0 chr1 4356584 4356618 -277837046 + (TTA)n Simple_repeat Simple_repeat 2 35 0 1453 165 137 4 chr1 4356618 4356867 -277836797 - AluJb SINE Alu -18 284 3 1134 217 120 69 chr1 4356867 4356946 -277836718 - MLT1C LTR MaLR -327 140 10 371 241 152 18 chr1 4356954 4357066 -277836598 + MIR SINE MIR 76 202 -60 268 176 0 0 chr1 4357107 4357158 -277836506 - MER5A DNA MER1_type -77 112 62 2302 94 3 0 chr1 4357158 4357465 -277836199 - AluSc SINE Alu -1 308 1 2601 180 25 44 chr1 4357807 4357871 -277835793 - L1MB2 LINE L1 -7 6164 6100 1212 166 0 0 chr1 4357871 4358046 -277835618 + FAM SINE Alu 1 175 0 2165 82 32 0 chr1 4358049 4358330 -277835334 + AluSq SINE Alu 1 290 -23 257 0 30 0 chr1 4358334 4358367 -277835297 + (CAA)n Simple_repeat Simple_repeat 2 35 0 2601 180 25 44 chr1 4358367 4358883 -277834781 - L1MB2 LINE L1 -76 6095 5586 696 206 221 32 chr1 4359071 4359187 -277834477 - MER45C DNA AcHobo -628 953 860 1971 154 0 3 chr1 4359187 4359492 -277834172 - AluSx SINE Alu -8 304 1 696 206 221 32 chr1 4359492 4359628 -277834036 - MER45C DNA AcHobo -721 860 653 599 190 0 49 chr1 4359717 4359859 -277833805 - MER45C DNA AcHobo -764 189 55 219 296 114 0 chr1 4359863 4359951 -277833713 + MIR SINE MIR 52 149 -113 747 199 8 0 chr1 4359953 4360084 -277833580 + AluJo SINE Alu 1 132 -180 1741 151 3 7 chr1 4360179 4360463 -277833201 + AluJb SINE Alu 1 283 -29 2080 116 10 7 chr1 4361546 4361847 -277831817 - AluSx SINE Alu 0 312 11 226 274 145 16 chr1 4361855 4361979 -277831685 + MIR SINE MIR 49 188 -74 242 260 106 16 chr1 4363876 4363999 -277829665 - L2 LINE L2 -1 3271 3138 938 168 6 12 chr1 4364512 4364673 -277828991 + AluJo SINE Alu 123 282 -30 270 0 0 0 chr1 4364675 4364705 -277828959 + (GA)n Simple_repeat Simple_repeat 1 30 0 494 316 84 85 chr1 4364722 4365180 -277828484 + L1MEc LINE L1 982 1469 -1107 310 297 68 7 chr1 4365201 4365349 -277828315 + HAL1b LINE L1 386 542 -806 225 259 35 35 chr1 4367569 4367654 -277826010 - MIR3 SINE MIR -54 154 70 2009 136 7 0 chr1 4370079 4370380 -277823284 - AluSx SINE Alu -9 303 1 192 261 82 67 chr1 4370642 4370776 -277822888 - L2 LINE L2 -161 3111 2976 204 205 0 0 chr1 4373437 4373476 -277820188 + CT-rich Low_complexity Low_complexity 1 39 0 3160 217 42 40 chr1 4373793 4373857 -277819807 - L1MB7 LINE L1 -1 6183 6121 2213 81 0 10 chr1 4373857 4374154 -277819510 + AluSx SINE Alu 1 294 -18 3160 217 42 40 chr1 4374154 4374488 -277819176 - L1MB7 LINE L1 -63 6121 5789 2399 77 10 0 chr1 4374488 4374798 -277818866 - AluSq SINE Alu 0 313 1 3160 217 42 40 chr1 4374798 4375278 -277818386 - L1MB7 LINE L1 -395 5789 5302 338 314 41 8 chr1 4375426 4375547 -277818117 + MIR3 SINE MIR 13 137 -71 201 320 20 40 chr1 4375636 4375736 -277817928 - MIR3 SINE MIR -108 100 3 1586 116 0 4 chr1 4376669 4376894 -277816770 - AluSc SINE Alu -16 293 70 1334 94 0 0 chr1 4376894 4377064 -277816600 - AluSc SINE Alu -139 170 1 653 123 98 33 chr1 4377074 4377196 -277816468 - FLAM_C SINE Alu 0 133 4 341 322 90 0 chr1 4377248 4377425 -277816239 - L1MEd LINE L1 -3316 2813 2621 2173 122 0 0 chr1 4377425 4377721 -277815943 + AluSx SINE Alu 1 296 -16 381 297 0 11 chr1 4377722 4377813 -277815851 + L1MC4 LINE L1 6614 6703 -1339 301 246 0 0 chr1 4377837 4377894 -277815770 - L1MC4 LINE L1 -1339 6703 6647 312 321 32 23 chr1 4377921 4378188 -277815476 - L1MEd LINE L1 -3526 2603 2331 1403 112 225 4 chr1 4378188 4378437 -277815227 + AluYb8 SINE Alu 1 304 -14 312 321 32 23 chr1 4378437 4378515 -277815149 - L1MEd LINE L1 -3798 2331 2255 3650 186 43 52 chr1 4378515 4378588 -277815076 - L1MB7 LINE L1 0 6253 6181 2297 95 0 0 chr1 4378588 4378883 -277814781 + AluSq SINE Alu 1 295 -18 3650 186 43 52 chr1 4378883 4379182 -277814482 - L1MB7 LINE L1 -72 6181 5881 2013 124 0 10 chr1 4379182 4379472 -277814192 - AluJb SINE Alu -5 307 21 3650 186 43 52 chr1 4379472 4380035 -277813629 - L1MB7 LINE L1 -372 5881 5315 599 275 0 0 chr1 4380035 4380155 -277813509 - FLAM_A SINE Alu -13 120 1 3650 186 43 52 chr1 4380155 4380495 -277813169 - L1MB7 LINE L1 -938 5315 2113 455 256 33 92 chr1 4380842 4381306 -277812358 - L1MEd LINE L1 -4751 1559 955 427 328 35 39 chr1 4381319 4381551 -277812113 - L2 LINE L2 0 3313 3083 1764 213 97 8 chr1 4381679 4382153 -277811511 - MLT1E2 LTR MaLR 0 626 111 297 219 0 0 chr1 4382211 4382275 -277811389 - MLT1E2 LTR MaLR -582 72 9 1515 48 0 68 chr1 4382348 4382555 -277811109 - AluY SINE Alu -118 193 1 1911 91 0 0 chr1 4382560 4382803 -277810861 - AluSx SINE Alu -18 294 52 357 334 63 88 chr1 4382803 4382926 -277810738 - L1MEd LINE L1 -5197 922 797 1202 107 11 165 chr1 4382926 4383198 -277810466 - MER30 DNA MER1_type 0 230 1 357 334 63 88 chr1 4383198 4383319 -277810345 - L1MEd LINE L1 -5322 797 674 2389 60 0 17 chr1 4383319 4383618 -277810046 - AluSg SINE Alu -16 294 1 357 334 63 88 chr1 4383618 4383770 -277809894 - L1MEd LINE L1 -5445 674 535 326 370 47 53 chr1 4383823 4384142 -277809522 - L1MEd LINE L1 -5693 426 110 1762 159 7 3 chr1 4384153 4384443 -277809221 - AluJb SINE Alu -21 291 1 624 247 64 70 chr1 4385874 4386029 -277807635 - MLT1C LTR MaLR -125 342 188 2328 102 0 0 chr1 4386029 4386334 -277807330 - AluSx SINE Alu -7 305 1 2249 112 0 0 chr1 4386334 4386638 -277807026 - AluSx SINE Alu -8 304 1 624 247 64 70 chr1 4386638 4386793 -277806871 - MLT1C LTR MaLR -277 190 33 336 205 19 0 chr1 4388653 4388809 -277804855 + (TCCA)n Simple_repeat Simple_repeat 4 162 0 205 246 16 0 chr1 4388811 4388872 -277804792 + CT-rich Low_complexity Low_complexity 3 64 0 356 185 35 6 chr1 4388877 4389050 -277804614 + (TCCA)n Simple_repeat Simple_repeat 3 180 0 342 182 47 0 chr1 4389085 4389233 -277804431 + (TCCA)n Simple_repeat Simple_repeat 4 158 0 456 170 38 0 chr1 4389307 4389632 -277804032 + (TCCA)n Simple_repeat Simple_repeat 1 337 0 423 178 52 0 chr1 4389679 4390011 -277803653 + (TCCA)n Simple_repeat Simple_repeat 1 349 0 527 182 38 5 chr1 4390042 4390772 -277802892 + (TCCA)n Simple_repeat Simple_repeat 1 754 0 326 321 191 12 chr1 4399416 4399746 -277793918 + L2 LINE L2 2380 2768 -546 581 276 69 69 chr1 4399803 4400151 -277793513 + L2 LINE L2 2931 3278 -35 239 232 0 29 chr1 4401655 4401724 -277791940 + G-rich Low_complexity Low_complexity 2 68 0 575 284 57 44 chr1 4402487 4402716 -277790948 + MIR SINE MIR 17 248 -14 402 354 32 0 chr1 4402741 4402899 -277790765 - MIR SINE MIR -20 242 80 2161 106 0 13 chr1 4407584 4407885 -277785779 + AluSq SINE Alu 1 297 -16 287 329 73 18 chr1 4408178 4408342 -277785322 - MIR SINE MIR -82 180 8 261 0 0 0 chr1 4408853 4408882 -277784782 + (TTA)n Simple_repeat Simple_repeat 2 30 0 1730 139 55 45 chr1 4408903 4409039 -277784625 + AluJo SINE Alu 1 134 -178 1771 147 25 73 chr1 4409039 4409366 -277784298 + AluJb SINE Alu 2 312 0 1730 139 55 45 chr1 4409366 4409538 -277784126 + AluJo SINE Alu 134 312 0 205 347 76 18 chr1 4411751 4411914 -277781750 - MIR SINE MIR -58 150 18 2096 106 20 0 chr1 4412758 4413050 -277780614 - AluSx SINE Alu -12 300 3 273 271 0 0 chr1 4413152 4413211 -277780453 + (TG)n Simple_repeat Simple_repeat 2 60 0 186 331 76 45 chr1 4415068 4415225 -277778439 + L3 LINE CR1 1280 1441 -136 233 330 104 0 chr1 4415631 4415693 -277777971 + L2 LINE L2 3152 3206 -66 1598 244 110 2 chr1 4415693 4416111 -277777553 + MLT1C LTR MaLR 1 463 -4 233 330 104 0 chr1 4416111 4416154 -277777510 + L2 LINE L2 3206 3268 -4 264 232 29 0 chr1 4416835 4416904 -277776760 - Charlie8 DNA MER1_type -2220 197 127 502 260 27 0 chr1 4417511 4417657 -277776007 - L1MC4a LINE L1 -1846 5962 5813 1394 153 66 35 chr1 4417693 4418040 -277775624 - L1MB3 LINE L1 -3 6180 5823 1836 128 4 0 chr1 4418050 4418315 -277775349 - AluSx SINE Alu -13 299 34 471 278 83 14 chr1 4418471 4418687 -277774977 + L2 LINE L2 2435 2665 -649 262 241 157 0 chr1 4418698 4418781 -277774883 + MER5A DNA MER1_type 11 106 -83 412 254 25 33 chr1 4418842 4418964 -277774700 + L2 LINE L2 2668 2788 -526 180 315 22 11 chr1 4419015 4419104 -277774560 + L2 LINE L2 2917 3006 -307 818 254 62 102 chr1 4419169 4419689 -277773975 + MLT1D LTR MaLR 1 499 -6 2175 96 0 7 chr1 4420385 4420677 -277772987 - AluSg SINE Alu -15 295 6 251 232 158 0 chr1 4420992 4421074 -277772590 + MIR SINE MIR 119 213 -49 882 185 29 0 chr1 4421475 4421648 -277772016 - MER58A DNA MER1_type 0 224 47 977 133 118 0 chr1 4421655 4421866 -277771798 + L1MB4 LINE L1 5945 6180 0 673 372 122 18 chr1 4421907 4422466 -277771198 - L3 LINE CR1 -627 950 334 2165 101 20 0 chr1 4422611 4422908 -277770756 - AluSx SINE Alu -9 303 1 352 329 81 33 chr1 4426721 4426931 -277766733 + MIR SINE MIR 12 231 -31 223 309 0 0 chr1 4429111 4429179 -277764485 - MIR SINE MIR -117 91 24 1960 146 0 3 chr1 4429543 4429838 -277763826 - AluSx SINE Alu -18 294 1 318 257 29 29 chr1 4433281 4433386 -277760278 + MER5A DNA MER1_type 33 137 -52 199 254 24 146 chr1 4433284 4433449 -277760215 - MER5A DNA MER1_type -24 165 21 * 2034 185 57 35 chr1 4433662 4433881 -277759783 + L1MB8 LINE L1 5614 5827 -351 2255 98 0 3 chr1 4433881 4434176 -277759488 + AluSx SINE Alu 7 300 -12 2034 185 57 35 chr1 4434176 4434270 -277759394 + L1MB8 LINE L1 5827 5917 -261 2007 95 32 18 chr1 4434270 4434555 -277759109 + AluSg SINE Alu 8 296 -14 2034 185 57 35 chr1 4434555 4434787 -277758877 + L1MB8 LINE L1 5917 6172 -6 205 384 20 10 chr1 4435005 4435104 -277758560 + L2 LINE L2 3168 3267 -5 2085 88 50 17 chr1 4435258 4435555 -277758109 - AluSp SINE Alu -6 307 1 21 0 0 0 chr1 4435728 4435749 -277757915 + AT_rich Low_complexity Low_complexity 1 21 0 508 212 38 2 chr1 4435909 4436092 -277757572 + MER20 DNA MER1_type 1 219 0 2308 86 0 10 chr1 4436663 4436966 -277756698 - AluSc SINE Alu -9 300 1 2024 148 3 0 chr1 4438096 4438407 -277755257 + AluJo SINE Alu 1 312 0 430 307 57 0 chr1 4439064 4439204 -277754460 - MIR SINE MIR -68 194 47 1422 237 58 29 chr1 4439263 4439412 -277754252 + MLT1C LTR MaLR 8 151 -316 1754 177 10 3 chr1 4439412 4439717 -277753947 - AluJb SINE Alu -5 307 1 1422 237 58 29 chr1 4439717 4440014 -277753650 + MLT1C LTR MaLR 151 467 0 425 294 107 19 chr1 4440695 4440987 -277752677 - L2 LINE L2 -238 3075 2750 2388 69 0 0 chr1 4441241 4441532 -277752132 + AluSx SINE Alu 1 291 -21 2097 134 0 0 chr1 4441934 4442232 -277751432 + AluSx SINE Alu 5 302 -10 407 230 75 12 chr1 4442378 4442553 -277751111 - MLT1C LTR MaLR 0 390 273 2105 94 31 44 chr1 4442553 4443002 -277750662 + MER51A LTR ERV1 1 534 -100 1706 110 0 0 chr1 4443002 4443238 -277750426 - AluSq SINE Alu -77 236 1 2105 94 31 44 chr1 4443238 4443338 -277750326 + MER51A LTR ERV1 534 634 0 571 201 35 46 chr1 4443400 4443513 -277750151 - MLT1C LTR MaLR -290 177 65 1491 169 143 0 chr1 4443513 4443786 -277749878 - AluJo SINE Alu 0 312 1 571 201 35 46 chr1 4443786 4443846 -277749818 - MLT1C LTR MaLR -402 65 6 404 318 9 0 chr1 4444220 4444327 -277749337 + L2 LINE L2 3205 3312 -1 806 101 40 20 chr1 4444669 4444817 -277748847 - MER53 DNA DNA -2 187 37 1846 158 0 13 chr1 4445143 4445446 -277748218 - AluJo SINE Alu -13 299 1 1932 137 6 19 chr1 4445449 4445764 -277747900 - AluSx SINE Alu -1 311 1 363 326 42 5 chr1 4446887 4447080 -277746584 + L1MC4a LINE L1 5725 5924 -1884 195 291 36 0 chr1 4447781 4447836 -277745828 + L2 LINE L2 3211 3267 -5 292 326 49 62 chr1 4448120 4448344 -277745320 + L2 LINE L2 3084 3304 -9 225 319 129 0 chr1 4449051 4449167 -277744497 + MIR SINE MIR 14 144 -118 269 265 43 26 chr1 4449802 4449919 -277743745 + L2 LINE L2 3186 3304 -9 253 305 63 52 chr1 4453079 4453253 -277740411 + L2 LINE L2 2915 3090 -182 846 264 60 35 chr1 4453344 4453758 -277739906 + MLT1H LTR MaLR 29 579 -16 183 333 14 0 chr1 4455037 4455106 -277738558 - MIR SINE MIR -58 150 81 232 102 41 0 chr1 4457202 4457251 -277736413 + (CAGA)n Simple_repeat Simple_repeat 1 51 0 1177 269 147 14 chr1 4457555 4458072 -277735592 + MLT1E LTR MaLR 6 591 -2 287 309 12 0 chr1 4458555 4458639 -277735025 + L2 LINE L2 3198 3282 -31 1669 140 0 76 chr1 4458991 4459306 -277734358 + AluJo SINE Alu 21 311 -1 2361 69 0 10 chr1 4459409 4459715 -277733949 + AluY SINE Alu 1 303 -8 346 140 0 0 chr1 4459725 4459782 -277733882 + AluS SINE Alu 1 57 -251 521 236 9 9 chr1 4460382 4460492 -277733172 - MER5A DNA MER1_type -79 110 1 945 213 20 0 chr1 4460525 4460722 -277732942 + MER58A DNA MER1_type 24 224 0 1803 282 169 35 chr1 4460732 4461065 -277732599 + L2 LINE L2 1329 1616 -1697 2261 107 0 0 chr1 4461065 4461365 -277732299 - AluSx SINE Alu -12 300 1 1803 282 169 35 chr1 4461365 4462777 -277730887 + L2 LINE L2 1616 3313 0 180 329 7 79 chr1 4463699 4463839 -277729825 - MIR SINE MIR -123 139 10 309 236 49 73 chr1 4463920 4464043 -277729621 - L1MC4 LINE L1 -4 8038 7919 661 226 10 0 chr1 4464070 4464374 -277729290 + (CA)n Simple_repeat Simple_repeat 1 307 0 697 311 126 17 chr1 4464390 4464907 -277728757 - L1MC4 LINE L1 -128 7914 7342 283 132 29 29 chr1 4464914 4464982 -277728682 + CT-rich Low_complexity Low_complexity 3 70 0 2159 112 13 0 chr1 4464984 4465287 -277728377 - AluSc SINE Alu -2 307 1 1767 180 0 7 chr1 4465676 4465981 -277727683 - AluJb SINE Alu -9 303 1 249 167 33 50 chr1 4466112 4466172 -277727492 + MIR3 SINE MIR 109 167 -41 262 238 0 0 chr1 4466578 4466641 -277727023 + MLT1H LTR MaLR 29 91 -458 570 208 0 0 chr1 4466641 4466790 -277726874 + (CA)n Simple_repeat Simple_repeat 1 149 0 301 260 0 39 chr1 4466793 4466870 -277726794 - L1MCa LINE L1 -4358 2068 1995 536 188 8 0 chr1 4466874 4467002 -277726662 + (CA)n Simple_repeat Simple_repeat 2 130 0 324 278 14 0 chr1 4467003 4467075 -277726589 - L1MCa LINE L1 -4359 2067 1995 266 180 16 0 chr1 4467076 4467137 -277726527 + (CA)n Simple_repeat Simple_repeat 2 63 0 236 196 0 0 chr1 4467170 4467216 -277726448 + MLT1I LTR MaLR 95 140 -269 404 190 41 22 chr1 4467813 4467925 -277725739 + MIR SINE MIR 46 153 -58 1881 96 4 15 chr1 4468282 4468552 -277725112 - AluSc SINE Alu -8 301 35 293 344 33 8 chr1 4468916 4469038 -277724626 + L2 LINE L2 3188 3312 -1 495 0 0 0 chr1 4470311 4470366 -277723298 + (CA)n Simple_repeat Simple_repeat 1 55 0 244 354 21 0 chr1 4471764 4471860 -277721804 - MIR SINE MIR -56 206 109 437 286 32 16 chr1 4472643 4472769 -277720895 - MIR3 SINE MIR -67 141 14 1700 159 9 38 chr1 4473202 4473344 -277720320 + AluJo SINE Alu 1 145 -167 2315 86 0 7 chr1 4473344 4473646 -277720018 + AluSq SINE Alu 1 300 -13 1700 159 9 38 chr1 4473646 4473823 -277719841 + AluJo SINE Alu 145 311 -1 4385 173 20 7 chr1 4473823 4474404 -277719260 + L1MB3 LINE L1 5179 5778 -405 2210 111 10 0 chr1 4474404 4474711 -277718953 + AluSx SINE Alu 1 310 -2 4385 173 20 7 chr1 4474711 4475067 -277718597 + L1MB3 LINE L1 5778 6128 -55 450 134 49 0 chr1 4476091 4476173 -277717491 + L1MB2 LINE L1 6086 6171 0 1764 149 3 17 chr1 4476310 4476598 -277717066 + AluJb SINE Alu 23 306 -6 2109 98 25 0 chr1 4476643 4476929 -277716735 + AluSx SINE Alu 18 310 -2 415 344 54 42 chr1 4477561 4477820 -277715844 - L3 LINE CR1 -152 1425 1164 269 314 98 36 chr1 4477994 4478188 -277715476 - L3 LINE CR1 -360 1217 1012 711 194 60 45 chr1 4478190 4478265 -277715399 + MER58B DNA MER1_type 1 73 -2347 1793 190 0 0 chr1 4478265 4478576 -277715088 - AluJo SINE Alu -1 311 1 711 194 60 45 chr1 4478576 4478701 -277714963 + MER58B DNA MER1_type 73 204 -2216 720 249 64 40 chr1 4478708 4478957 -277714707 - MLT1A2 LTR MaLR 0 374 120 983 126 0 31 chr1 4478958 4479117 -277714547 + AluJb SINE Alu 122 275 -37 520 113 94 0 chr1 4479117 4479223 -277714441 - MLT1A2 LTR MaLR -258 116 1 539 223 16 0 chr1 4479227 4479348 -277714316 + MER58B DNA MER1_type 211 333 -8 1374 175 13 89 chr1 4479349 4479663 -277714001 + AluJo SINE Alu 1 290 -22 1338 179 64 32 chr1 4479731 4479782 -277713882 + AluJo SINE Alu 1 49 -263 2075 85 18 0 chr1 4479782 4480064 -277713600 - AluSx SINE Alu -15 297 11 1338 179 64 32 chr1 4480064 4480146 -277713518 + AluJo SINE Alu 49 127 -185 297 0 0 0 chr1 4480146 4480179 -277713485 + (CA)n Simple_repeat Simple_repeat 2 34 0 1338 179 64 32 chr1 4480179 4480324 -277713340 + AluJo SINE Alu 127 289 -23 1945 112 18 7 chr1 4481584 4481869 -277711795 + AluJb SINE Alu 1 288 -24 213 39 0 0 chr1 4481877 4481903 -277711761 + (CCAA)n Simple_repeat Simple_repeat 2 27 0 1123 181 67 0 chr1 4482024 4482234 -277711430 - MER58A DNA MER1_type 0 224 1 2227 113 7 0 chr1 4482256 4482566 -277711098 + AluSx SINE Alu 1 312 0 455 258 27 59 chr1 4483475 4483661 -277710003 - MIR SINE MIR -49 213 34 272 332 132 18 chr1 4483747 4484081 -277709583 - L2 LINE L2 -638 2676 2305 390 359 122 15 chr1 4484087 4484430 -277709234 + L2 LINE L2 2892 3271 -1 418 266 3 6 chr1 4484753 4485067 -277708597 + (CCA)n Simple_repeat Simple_repeat 1 313 0 397 228 0 11 chr1 4485097 4485277 -277708387 + (CCA)n Simple_repeat Simple_repeat 2 179 0 329 225 0 22 chr1 4485295 4485477 -277708187 + (CCA)n Simple_repeat Simple_repeat 2 179 0 242 211 0 11 chr1 4485492 4485582 -277708082 + (CCA)n Simple_repeat Simple_repeat 1 89 0 727 194 0 8 chr1 4487141 4487270 -277706394 - FLAM_A SINE Alu -3 130 3 468 289 31 5 chr1 4487276 4487409 -277706255 - MER113 DNA MER1_type? -320 201 60 2082 135 0 19 chr1 4487409 4487727 -277705937 + AluSx SINE Alu 1 312 0 468 289 31 5 chr1 4487727 4487787 -277705877 - MER113 DNA MER1_type? -461 60 3 200 289 0 0 chr1 4488156 4488201 -277705463 + (CA)n Simple_repeat Simple_repeat 1 45 0 2170 87 10 17 chr1 4488948 4489247 -277704417 - AluSx SINE Alu -15 297 1 212 248 0 69 chr1 4490827 4490928 -277702736 + G-rich Low_complexity Low_complexity 3 96 0 * 279 168 52 75 chr1 4490855 4491028 -277702636 + (AGGTG)n Simple_repeat Simple_repeat 3 171 0 * 350 207 55 43 chr1 4490946 4491110 -277702554 + G-rich Low_complexity Low_complexity 3 168 0 253 254 36 24 chr1 4491071 4491236 -277702428 + (GAGTG)n Simple_repeat Simple_repeat 5 171 0 * 386 213 58 40 chr1 4491168 4491342 -277702322 + G-rich Low_complexity Low_complexity 3 179 0 372 218 58 40 chr1 4491405 4491579 -277702085 + G-rich Low_complexity Low_complexity 3 179 0 218 206 43 54 chr1 4491603 4491695 -277701969 + G-rich Low_complexity Low_complexity 3 93 0 329 246 39 50 chr1 4492118 4492297 -277701367 + C-rich Low_complexity Low_complexity 3 179 0 355 231 33 55 chr1 4492315 4492497 -277701167 + C-rich Low_complexity Low_complexity 3 180 0 258 250 29 57 chr1 4492515 4492655 -277701009 + C-rich Low_complexity Low_complexity 3 138 0 1256 214 101 34 chr1 4492776 4493183 -277700481 + MLT1C LTR MaLR 4 437 -30 799 197 0 0 chr1 4493226 4493358 -277700306 + FLAM_A SINE Alu 1 132 -1 350 359 139 40 chr1 4493764 4494065 -277699599 + L1MC/D LINE L1 5449 5779 -2029 191 318 0 30 chr1 4494510 4494576 -277699088 + MIR SINE MIR 37 100 -108 218 303 115 8 chr1 4495516 4495638 -277698026 - L2 LINE L2 -60 3212 3078 248 278 0 0 chr1 4495701 4495755 -277697909 + MIR3 SINE MIR 117 170 -38 377 66 16 0 chr1 4496228 4496289 -277697375 + (TG)n Simple_repeat Simple_repeat 1 62 0 192 77 0 0 chr1 4496910 4496936 -277696728 + (TTTTC)n Simple_repeat Simple_repeat 5 30 0 247 300 80 0 chr1 4498688 4498788 -277694876 + MIR SINE MIR 42 149 -113 187 335 58 48 chr1 4499351 4499557 -277694107 + L2 LINE L2 2830 3037 -235 206 283 17 0 chr1 4501753 4501813 -277691851 + MIR SINE MIR 73 133 -129 198 333 36 63 chr1 4502185 4502296 -277691368 + MIR3 SINE MIR 15 122 -86 237 306 14 35 chr1 4504499 4504643 -277689021 + G-rich Low_complexity Low_complexity 1 141 0 * 285 254 14 51 chr1 4504551 4504689 -277688975 + GA-rich Low_complexity Low_complexity 1 133 0 406 213 131 0 chr1 4506050 4506172 -277687492 - Charlie1 DNA MER1_type -287 2474 2337 208 341 159 0 chr1 4506259 4506391 -277687273 + L2 LINE L2 3161 3313 0 430 285 115 6 chr1 4506950 4507115 -277686549 + MIR SINE MIR 77 259 -3 183 229 0 21 chr1 4508165 4508213 -277685451 - L2 LINE L2 -210 3062 3016 435 207 9 17 chr1 4508253 4508369 -277685295 - MLT1D LTR MaLR 0 505 391 4315 204 89 3 chr1 4508923 4510036 -277683628 - Charlie1a DNA MER1_type -6 1449 241 422 311 99 0 chr1 4510079 4510240 -277683424 - Charlie1a DNA MER1_type -1278 177 1 255 312 91 0 chr1 4510682 4510759 -277682905 - MER91A DNA MER1_type -111 85 2 1480 182 163 0 chr1 4511502 4511815 -277681849 + MER47A DNA MER2_type 3 366 0 199 242 0 76 chr1 4512462 4512528 -277681136 - L2 LINE L2 -6 3266 3206 338 256 35 0 chr1 4512552 4512638 -277681026 - MIR SINE MIR -46 216 128 609 265 62 65 chr1 4512952 4513035 -277680629 - L1MC4a LINE L1 -1842 5966 5884 1969 125 7 7 chr1 4513035 4513332 -277680332 - AluSx SINE Alu -14 298 2 609 265 62 65 chr1 4513332 4513603 -277680061 - L1MC4a LINE L1 -1924 5884 5613 652 271 46 8 chr1 4513623 4513863 -277679801 + L1M4 LINE L1 2210 2458 -3688 1380 181 27 4 chr1 4513864 4514339 -277679325 - MER68 LTR ERV1 0 562 3 879 235 70 78 chr1 4514343 4515050 -277678614 + L1M4 LINE L1 2486 3197 -2949 1775 170 83 9 chr1 4515050 4515374 -277678290 - MER7A DNA MER2_type 0 346 1 879 235 70 78 chr1 4515374 4515899 -277677765 + L1M4 LINE L1 3197 3908 -2238 238 349 121 6 chr1 4516489 4516655 -277677009 - L2 LINE L2 -54 3259 3075 321 347 151 8 chr1 4516995 4517234 -277676430 + L2 LINE L2 2624 2896 -418 1245 257 47 32 chr1 4517234 4517767 -277675897 - MER74A LTR ERVL -4 554 14 1554 124 87 4 chr1 4517772 4518047 -277675617 + AluJb SINE Alu 1 298 -14 319 296 72 13 chr1 4518074 4518226 -277675438 + L2 LINE L2 2883 3043 -270 225 94 0 0 chr1 4518226 4518258 -277675406 + (CCCTG)n Simple_repeat Simple_repeat 3 34 0 379 237 61 69 chr1 4518271 4518402 -277675262 + L2 LINE L2 3184 3313 0 366 274 63 23 chr1 4518674 4518849 -277674815 - MLT1K LTR MaLR 0 588 407 326 105 0 18 chr1 4519656 4519713 -277673951 + (TCCCC)n Simple_repeat Simple_repeat 3 58 0 221 286 0 0 chr1 4519820 4519869 -277673795 + C-rich Low_complexity Low_complexity 4 52 0 209 313 198 0 chr1 4519869 4519965 -277673699 - MIR SINE MIR -116 146 32 278 383 120 22 chr1 4520060 4520384 -277673280 - L2 LINE L2 -5 3308 2953 281 342 79 26 chr1 4521343 4521495 -277672169 - MIR SINE MIR -5 257 98 1134 163 5 5 chr1 4524112 4524302 -277669362 - AluJo SINE Alu -16 296 107 931 106 0 87 chr1 4524498 4524528 -277669136 + L1PB1 LINE L1 6005 6036 -115 2110 132 7 3 chr1 4524528 4524838 -277668826 + AluSx SINE Alu 1 311 -1 931 106 0 87 chr1 4524838 4524968 -277668696 + L1PB1 LINE L1 6036 6151 0 252 304 13 0 chr1 4525120 4525199 -277668465 - L2 LINE L2 -5 3267 3188 342 167 15 0 chr1 4525251 4525317 -277668347 - MER20 DNA MER1_type -1 218 152 1803 172 7 3 chr1 4527190 4527493 -277666171 - AluJb SINE Alu -8 304 1 286 191 0 0 chr1 4528654 4528671 -277664993 - AluSq SINE Alu -136 167 151 1702 112 29 0 chr1 4528671 4528912 -277664752 - AluSx SINE Alu -13 299 52 286 191 0 0 chr1 4528912 4528957 -277664707 - AluSq SINE Alu -151 152 105 1775 172 3 0 chr1 4529099 4529395 -277664269 - AluSx SINE Alu -15 297 1 362 319 90 12 chr1 4529506 4529672 -277663992 + MIR SINE MIR 65 243 -19 285 263 40 0 chr1 4529668 4529744 -277663920 - L2 LINE L2 -5 3267 3189 * 1074 118 40 79 chr1 4529796 4530024 -277663640 - MER20 DNA MER1_type 0 219 1 1777 163 7 10 chr1 4531168 4531469 -277662195 + AluJb SINE Alu 1 300 -12 2015 168 23 5 chr1 4531527 4531925 -277661739 - MER72 LTR ERV1 0 722 318 883 187 49 0 chr1 4531958 4532161 -277661503 - MER72 LTR ERV1 -505 217 5 1955 138 10 0 chr1 4532483 4532773 -277660891 + AluJo SINE Alu 2 294 -18 355 285 46 39 chr1 4532774 4532904 -277660760 - L1MC4 LINE L1 -1339 6703 6573 377 288 30 0 chr1 4533550 4533682 -277659982 - L1MC4 LINE L1 -1908 5900 5765 2278 101 7 0 chr1 4533727 4534035 -277659629 + AluSx SINE Alu 1 310 -2 1926 114 73 0 chr1 4534304 4534576 -277659088 - AluSx SINE Alu -10 302 11 266 298 12 12 chr1 4534748 4534832 -277658832 + L3 LINE CR1 1417 1500 -77 890 199 0 6 chr1 4535371 4535559 -277658105 + FRAM SINE Alu 1 176 0 1662 178 45 116 chr1 4536278 4536813 -277656851 - L1MB3 LINE L1 -1 6182 5686 24 0 0 0 chr1 4538657 4538681 -277654983 + GC_rich Low_complexity Low_complexity 1 24 0 1756 155 6 54 chr1 4538838 4539005 -277654659 - AluJb SINE Alu -10 302 156 2276 104 7 0 chr1 4539005 4539302 -277654362 - AluSx SINE Alu -13 299 1 1756 155 6 54 chr1 4539302 4539451 -277654213 - AluJb SINE Alu -156 156 1 335 286 0 0 chr1 4539686 4539763 -277653901 - L2 LINE L2 -4 3309 3233 348 224 60 82 chr1 4540740 4540923 -277652741 + MIR SINE MIR 33 211 -51 220 290 30 2 chr1 4541086 4541162 -277652502 - MIR SINE MIR -105 103 25 4644 179 22 42 chr1 4541697 4543209 -277650455 - L1MA6 LINE L1 -23 6277 4800 647 281 115 0 chr1 4543367 4543733 -277649931 - L1ME4a LINE L1 -233 5888 5481 2257 113 3 6 chr1 4544310 4544621 -277649043 + AluSg SINE Alu 1 310 0 311 191 0 11 chr1 4545070 4545159 -277648505 + (TAGGG)n Simple_repeat Simple_repeat 3 90 0 440 276 44 22 chr1 4546647 4546872 -277646792 - L1ME3A LINE L1 -220 5950 5721 416 245 167 30 chr1 4546969 4547202 -277646462 - MLT1H LTR MaLR -188 361 97 244 108 0 0 chr1 4547573 4547610 -277646054 + U2 snRNA snRNA 1 37 -151 240 294 81 22 chr1 4548168 4548304 -277645360 + L2 LINE L2 3168 3311 -2 282 56 0 0 chr1 4548343 4548379 -277645285 + (TG)n Simple_repeat Simple_repeat 1 36 0 534 143 0 12 chr1 4550211 4550295 -277643369 + FLAM_A SINE Alu 40 122 -20 1254 168 74 1 chr1 4550734 4551164 -277642500 - MER21B LTR ERV1 -358 505 1 1037 134 85 27 chr1 4551506 4551729 -277641935 - Tigger7 DNA MER2_type -2 2489 2254 952 212 47 0 chr1 4551743 4551936 -277641728 - Tigger7 DNA MER2_type -2254 233 32 2013 129 31 0 chr1 4552731 4553025 -277640639 - AluSx SINE Alu -9 303 1 406 296 73 14 chr1 4553739 4553959 -277639705 - L1MC5 LINE L1 -107 7854 7622 655 268 136 68 chr1 4555032 4555160 -277638504 - L1MC4 LINE L1 -376 7666 7548 2496 80 0 0 chr1 4555160 4555462 -277638202 - AluY SINE Alu -9 302 1 655 268 136 68 chr1 4555462 4556083 -277637581 - L1MC4 LINE L1 -494 7548 6866 573 314 63 35 chr1 4556096 4557050 -277636614 - L1ME4a LINE L1 -816 5330 4350 421 222 10 10 chr1 4557154 4557253 -277636411 - L1MD1 LINE L1 -1 6241 6143 1709 175 104 19 chr1 4557253 4557618 -277636046 - MSTD LTR MaLR 0 396 1 3571 105 18 0 chr1 4558556 4559061 -277634603 + MER75 DNA T2_type 1 514 0 338 325 25 12 chr1 4560315 4560478 -277633186 - MLT1D LTR MaLR 0 505 341 569 272 82 22 chr1 4560579 4560943 -277632721 - MLT1D LTR MaLR -119 386 1 2302 105 0 0 chr1 4561824 4562119 -277631545 - AluSx SINE Alu -17 295 1 2345 126 57 94 chr1 4565321 4565626 -277628038 + Tigger1 DNA MER2_type 1896 2211 -207 1790 174 7 0 chr1 4565626 4565914 -277627750 - AluJo SINE Alu -17 295 6 2345 126 57 94 chr1 4565914 4565953 -277627711 + Tigger1 DNA MER2_type 2211 2250 -168 2210 123 20 0 chr1 4565953 4566254 -277627410 - AluSx SINE Alu -5 307 1 2345 126 57 94 chr1 4566254 4566450 -277627214 + Tigger1 DNA MER2_type 2250 2417 -1 8246 228 49 34 chr1 4566450 4569104 -277624560 + L1M4 LINE L1 2137 4832 -1314 1390 236 114 43 chr1 4569092 4569609 -277624055 + L1MD2 LINE L1 5567 6120 -239 * 628 178 138 13 chr1 4571142 4571294 -277622370 + MER2 DNA MER2_type 159 329 -16 2444 67 0 0 chr1 4571797 4572109 -277621555 + AluY SINE Alu 1 312 0 21 0 0 0 chr1 4572168 4572189 -277621475 + AT_rich Low_complexity Low_complexity 1 21 0 1657 133 130 7 chr1 4572281 4572574 -277621090 + MER2 DNA MER2_type 2 330 -15 1983 161 0 3 chr1 4572756 4573060 -277620604 + AluJb SINE Alu 1 303 -9 2863 246 161 22 chr1 4573316 4574489 -277619175 - L1MEc LINE L1 -5029 1367 32 940 195 12 0 chr1 4574693 4574862 -277618802 - FRAM SINE Alu -8 168 1 803 175 35 14 chr1 4575005 4575148 -277618516 - AluJo SINE Alu -141 171 26 21 0 0 0 chr1 4575148 4575169 -277618495 + AT_rich Low_complexity Low_complexity 1 21 0 359 297 72 7 chr1 4575175 4575313 -277618351 + L1ME LINE L1 4669 4815 -1331 1902 163 132 37 chr1 4575348 4575809 -277617855 - MLT1D LTR MaLR 0 505 1 312 343 30 54 chr1 4575820 4575986 -277617678 + L1ME LINE L1 4904 5065 -1081 382 319 104 8 chr1 4576066 4576354 -277617310 + L1ME LINE L1 5332 5641 -521 269 111 44 0 chr1 4576655 4576700 -277616964 + MIR SINE MIR 98 144 -118 497 253 25 81 chr1 4576700 4577060 -277616604 + L1M4 LINE L1 4995 5334 -812 1756 131 3 122 chr1 4577351 4577481 -277616183 + AluJo SINE Alu 1 145 -157 1460 174 7 18 chr1 4577481 4577763 -277615901 + AluSc SINE Alu 1 279 -30 1756 131 3 122 chr1 4577763 4577975 -277615689 + AluJo SINE Alu 145 302 0 266 236 0 0 chr1 4578159 4578214 -277615450 - L2 LINE L2 -5 3267 3213 408 193 76 17 chr1 4578285 4578404 -277615260 + L1MC1 LINE L1 6191 6316 -17 623 316 112 49 chr1 4578429 4578514 -277615150 - L1 LINE L1 -2407 3739 3661 1002 221 72 0 chr1 4578514 4578722 -277614942 - MER58A DNA MER1_type -1 223 1 623 316 112 49 chr1 4578722 4579395 -277614269 - L1 LINE L1 -2485 3661 2890 745 280 92 9 chr1 4579622 4579970 -277613694 - MLT1I LTR MaLR -1 449 23 232 237 105 13 chr1 4580025 4580101 -277613563 + L2 LINE L2 3226 3308 -5 898 191 54 112 chr1 4580101 4580415 -277613249 - MLT1K LTR MaLR 0 588 293 961 102 16 0 chr1 4580858 4580985 -277612679 - AluSq/x SINE Alu -183 129 1 1610 197 0 45 chr1 4583266 4583575 -277610089 - AluJb SINE Alu -17 295 1 1679 83 0 0 chr1 4584541 4584758 -277608906 - AluSq SINE Alu -10 303 87 2584 55 0 0 chr1 4585138 4585449 -277608215 - AluY SINE Alu 0 311 1 789 247 18 0 chr1 4589802 4589972 -277603692 - MIR SINE MIR -9 253 81 979 182 44 0 chr1 4591638 4591819 -277601845 - MER53 DNA DNA 0 189 1 1662 234 62 77 chr1 4593272 4594218 -277599446 - L1MC5 LINE L1 -169 7792 6861 376 325 60 65 chr1 4594357 4595146 -277598518 + L1M4 LINE L1 2378 3162 -2984 4656 187 57 16 chr1 4596497 4596641 -277597023 - L1MC2 LINE L1 -1 6343 6206 1926 147 3 16 chr1 4596641 4596947 -277596717 - AluJb SINE Alu 0 312 11 4656 187 57 16 chr1 4596947 4598115 -277595549 - L1MC2 LINE L1 -138 6206 4967 857 325 109 19 chr1 4598111 4598834 -277594830 - L1ME3A LINE L1 -67 6103 5316 * 209 83 28 0 chr1 4598834 4598870 -277594794 + (TG)n Simple_repeat Simple_repeat 1 37 0 666 285 107 87 chr1 4599792 4601704 -277591960 - L1MC4 LINE L1 -143 7899 5860 260 329 84 21 chr1 4601824 4601967 -277591697 - L1MC4 LINE L1 -1969 5839 5688 1251 139 0 0 chr1 4602176 4602363 -277591301 - AluSg/x SINE Alu 0 310 124 3681 49 7 0 chr1 4602363 4602813 -277590851 - L1PA4 LINE L1 -1 6154 5702 900 292 62 54 chr1 4602858 4603231 -277590433 - L1M4 LINE L1 -2916 3230 2855 1241 171 19 0 chr1 4603234 4603450 -277590214 - AluJb SINE Alu -8 304 85 483 283 54 30 chr1 4603452 4603535 -277590129 - L1M4 LINE L1 -3322 2824 2744 8247 60 4 5 chr1 4603535 4604543 -277589121 + LTR13 LTR ERVK 1 1007 0 483 283 54 30 chr1 4604543 4604625 -277589039 - L1M4 LINE L1 -3402 2744 2655 223 289 67 83 chr1 4605177 4605357 -277588307 - L2 LINE L2 0 3272 3096 640 105 0 0 chr1 4605414 4605509 -277588155 - L1P LINE L1 -6007 139 45 208 268 146 0 chr1 4607942 4608065 -277585599 + L2 LINE L2 3105 3245 -27 184 151 208 57 chr1 4615781 4615834 -277577830 + L2 LINE L2 3193 3253 -60 288 130 0 0 chr1 4617468 4617514 -277576150 + (TG)n Simple_repeat Simple_repeat 1 46 0 687 137 0 0 chr1 4617616 4617740 -277575924 + (TG)n Simple_repeat Simple_repeat 1 124 0 389 331 42 0 chr1 4618502 4618644 -277575020 - MIR3 SINE MIR -49 159 12 438 259 12 42 chr1 4620594 4620760 -277572904 - MER5B DNA MER1_type -28 161 1 301 238 0 12 chr1 4625630 4625710 -277567954 - L1MC5 LINE L1 -187 7774 7696 445 285 91 0 chr1 4626007 4626193 -277567471 - L1MC5 LINE L1 -779 7182 6980 3025 270 108 28 chr1 4626334 4627806 -277565858 - L1MD3 LINE L1 0 8039 6461 614 243 4 6 chr1 4628211 4628721 -277564943 + (TG)n Simple_repeat Simple_repeat 1 509 0 488 242 7 0 chr1 4628735 4628888 -277564776 + (TG)n Simple_repeat Simple_repeat 1 154 0 247 265 48 0 chr1 4628890 4628973 -277564691 + (CATG)n Simple_repeat Simple_repeat 4 90 0 348 259 0 0 chr1 4628973 4629108 -277564556 + (TG)n Simple_repeat Simple_repeat 2 136 0 267 336 39 0 chr1 4631594 4631698 -277561966 - L3b LINE CR1 -331 1252 1145 217 362 143 0 chr1 4636094 4636290 -277557374 - L2 LINE L2 -508 2806 2583 880 261 64 16 chr1 4636307 4636621 -277557043 - MLT1J LTR MaLR -18 493 165 1255 244 138 14 chr1 4640609 4641023 -277552641 + MLT1C LTR MaLR 3 467 0 625 275 39 14 chr1 4642527 4642734 -277550930 - MLT1K LTR MaLR -16 572 361 2438 121 8 32 chr1 4643343 4643716 -277549948 + THE1B LTR MaLR 1 364 0 519 306 144 4 chr1 4644175 4644479 -277549185 + L2 LINE L2 2741 3083 -230 558 264 110 50 chr1 4644921 4645285 -277548379 + MLT1H LTR MaLR 155 540 -9 2085 122 148 16 chr1 4645570 4645948 -277547716 - MSTA LTR MaLR 0 428 1 186 118 0 0 chr1 4645968 4646002 -277547662 + (TGAA)n Simple_repeat Simple_repeat 1 34 0 341 236 6 0 chr1 4647741 4647915 -277545749 + (TG)n Simple_repeat Simple_repeat 2 176 0 226 232 0 36 chr1 4648860 4648916 -277544748 + L2 LINE L2 3254 3307 -6 1439 194 56 24 chr1 4648966 4649167 -277544497 - MLT1A1 LTR MaLR 0 365 147 1847 147 0 66 chr1 4649167 4649379 -277544285 - AluJb SINE Alu 0 312 128 2389 68 0 0 chr1 4649379 4649673 -277543991 + AluY SINE Alu 1 294 -17 1847 147 0 66 chr1 4649673 4649794 -277543870 - AluJb SINE Alu -184 128 1 1439 194 56 24 chr1 4649794 4649932 -277543732 - MLT1A1 LTR MaLR -218 147 15 369 324 81 23 chr1 4650511 4650708 -277542956 - MIR SINE MIR -14 248 43 230 148 21 43 chr1 4650751 4650824 -277542840 - MER91 DNA MER1_type -126 70 1 229 360 23 0 chr1 4651213 4651299 -277542365 - MIR SINE MIR -98 164 77 191 174 0 65 chr1 4651998 4652044 -277541620 + MIR SINE MIR 96 138 -124 299 357 65 11 chr1 4652153 4652338 -277541326 + MIR SINE MIR 66 260 -2 1052 273 68 5 chr1 4652811 4653195 -277540469 + MLT2D LTR ERVL 7 414 0 271 275 43 72 chr1 4653737 4653875 -277539789 - MIR3 SINE MIR -72 136 3 237 176 39 78 chr1 4655236 4655338 -277538326 - MLT1H LTR MaLR -33 516 419 2355 88 0 0 chr1 4655890 4656195 -277537469 - AluSx SINE Alu -7 305 1 533 143 11 0 chr1 4657421 4657512 -277536152 + L1MB7 LINE L1 5886 5977 -207 251 83 0 0 chr1 4657518 4657554 -277536110 - MLT2C2 LTR ERVL 0 464 429 231 204 0 0 chr1 4657643 4657697 -277535967 + (TG)n Simple_repeat Simple_repeat 1 54 0 742 218 38 144 chr1 4658001 4658396 -277535268 - MER51C LTR ERV1 0 640 288 728 305 128 31 chr1 4659866 4660381 -277533283 + MLT1K LTR MaLR 14 578 -10 587 340 22 19 chr1 4661787 4662102 -277531562 - ERVL LTR ERVL -422 5342 5027 857 104 22 0 chr1 4662103 4662237 -277531427 - MER4B LTR ERV1 0 610 474 245 87 0 22 chr1 4662239 4662285 -277531379 + (TTTTA)n Simple_repeat Simple_repeat 1 45 0 6848 26 5 1 chr1 4662285 4663805 -277529859 - L1PA3 LINE L1 -24 6131 4608 2484 93 49 60 chr1 4663805 4664024 -277529640 - MER4B LTR ERV1 -129 481 261 2102 117 13 0 chr1 4664024 4664324 -277529340 - AluSx SINE Alu -8 304 1 2484 93 49 60 chr1 4664324 4664566 -277529098 - MER4B LTR ERV1 -349 261 23 2254 114 0 0 chr1 4664566 4664873 -277528791 - AluSq SINE Alu -6 307 1 2484 93 49 60 chr1 4664873 4664896 -277528768 - MER4B LTR ERV1 -587 23 1 529 305 80 5 chr1 4665140 4665353 -277528311 - ERVL LTR ERVL -1151 4613 4385 494 296 32 16 chr1 4665452 4665641 -277528023 - ERVL LTR ERVL -1524 4240 4049 792 369 38 19 chr1 4665755 4666541 -277527123 - ERVL LTR ERVL -1898 3866 3066 198 103 0 0 chr1 4666807 4666836 -277526828 + (TC)n Simple_repeat Simple_repeat 1 29 0 1785 129 58 0 chr1 4666836 4667114 -277526550 - AluSx SINE Alu -1 311 18 285 352 61 19 chr1 4667121 4667547 -277526117 - ERVL LTR ERVL -2879 2885 2422 480 351 53 1 chr1 4667652 4667970 -277525694 - ERVL LTR ERVL -2762 2234 1899 1027 257 68 31 chr1 4668059 4668516 -277525148 + MLT1H LTR MaLR 1 549 0 3875 134 17 26 chr1 4668874 4669341 -277524323 - MER50 LTR ERV1 -23 711 252 2392 107 13 43 chr1 4669341 4669716 -277523948 - THE1B LTR MaLR 0 364 1 3875 134 17 26 chr1 4669716 4669966 -277523698 - MER50 LTR ERV1 -482 252 1 721 278 28 0 chr1 4672262 4672474 -277521190 + MIR SINE MIR 45 262 0 25 0 0 0 chr1 4672499 4672524 -277521140 + GC_rich Low_complexity Low_complexity 1 25 0 609 244 38 38 chr1 4673263 4673501 -277520163 - LTR37B LTR ERV1 -27 441 204 407 130 0 130 chr1 4673888 4673914 -277519750 - MADE1 DNA Mariner 0 80 52 2452 67 0 0 chr1 4673914 4674214 -277519450 + AluY SINE Alu 1 300 -11 407 130 0 130 chr1 4674214 4674279 -277519385 - MADE1 DNA Mariner -28 52 1 328 282 42 33 chr1 4674998 4675211 -277518453 + MER113 DNA MER1_type? 9 223 -298 241 173 0 67 chr1 4675287 4675362 -277518302 + CT-rich Low_complexity Low_complexity 3 72 0 1378 165 53 8 chr1 4676466 4676709 -277516955 + AluJo SINE Alu 1 254 -58 1086 178 28 19 chr1 4676782 4676995 -277516669 + AluJb SINE Alu 91 305 -7 359 31 0 137 chr1 4678397 4678701 -277514963 + (CCCCAG)n Simple_repeat Simple_repeat 1 262 0 257 304 33 0 chr1 4678780 4678872 -277514792 - MER21B LTR ERV1 -767 96 2 256 328 56 16 chr1 4679526 4679651 -277514013 + MIR SINE MIR 60 189 -73 220 345 95 0 chr1 4680807 4680923 -277512741 + MIR3 SINE MIR 32 158 -50 5227 121 22 2 chr1 4880945 4881985 -277311679 - L1PA15 LINE L1 -87 6078 5021 252 0 0 0 chr1 4881985 4882013 -277311651 + (T)n Simple_repeat Simple_repeat 1 28 0 371 360 35 38 chr1 4882077 4882391 -277311273 - L1 LINE L1 -1124 5022 4710 515 67 33 11 chr1 4882498 4882588 -277311076 + (TCC)n Simple_repeat Simple_repeat 1 92 0 1598 148 4 34 chr1 4882606 4882870 -277310794 - AluJb SINE Alu -49 263 8 415 173 0 27 chr1 4883168 4883243 -277310421 + AluS SINE Alu 1 73 -240 1377 252 78 9 chr1 4883284 4883721 -277309943 - MLT1C LTR MaLR 0 467 1 1700 204 18 18 chr1 4884806 4885189 -277308475 - MER89 LTR ERV1 -2 557 175 202 293 0 0 chr1 4885203 4885261 -277308403 - L2 LINE L2 -1333 1981 1924 359 270 43 74 chr1 4885287 4885517 -277308147 - L2 LINE L2 -1487 1827 1605 786 232 102 68 chr1 4885561 4885945 -277307719 + MLT1C LTR MaLR 6 402 -65 519 132 0 13 chr1 4886045 4886121 -277307543 - AluJ/FLAM SINE Alu -236 76 2 237 315 41 14 chr1 4886123 4886269 -277307395 + L1MC4a LINE L1 6418 6567 -1241 685 282 146 15 chr1 4886300 4886630 -277307034 + L1MC4 LINE L1 6916 7288 -754 1442 290 83 6 chr1 4886732 4887277 -277306387 + L1MC4 LINE L1 7456 8042 0 2372 94 0 7 chr1 4887300 4887608 -277306056 + AluY SINE Alu 1 306 -5 220 258 245 52 chr1 4887994 4888118 -277305546 - MIR SINE MIR -71 137 8 983 236 218 21 chr1 4890277 4890395 -277303269 - MLT1C LTR MaLR 0 467 374 2122 138 13 45 chr1 4890395 4890632 -277303032 + THE1B LTR MaLR 1 223 -141 2294 109 3 0 chr1 4890632 4890926 -277302738 + AluSp SINE Alu 1 295 -18 2122 138 13 45 chr1 4890926 4891064 -277302600 + THE1B LTR MaLR 223 364 0 983 236 218 21 chr1 4891064 4891330 -277302334 - MLT1C LTR MaLR -93 374 7 458 232 129 0 chr1 4891540 4891695 -277301969 + MER96 DNA MER1_type 1 175 0 2481 18 0 7 chr1 4891911 4892188 -277301476 - AluYb8 SINE Alu -2 316 42 1871 170 66 28 chr1 4893172 4893704 -277299960 + MLT2A2 LTR ERVL 1 553 -1 920 154 6 0 chr1 4894393 4894568 -277299096 + (CAT)n Simple_repeat Simple_repeat 3 178 0 263 207 37 0 chr1 4894630 4894712 -277298952 + (CACCAT)n Simple_repeat Simple_repeat 2 86 0 268 185 0 19 chr1 4896288 4896342 -277297322 + MIR SINE MIR 94 146 -62 207 326 61 10 chr1 4897162 4897260 -277296404 + MIR SINE MIR 51 153 -109 305 297 79 44 chr1 4897299 4897528 -277296136 + L2 LINE L2 1816 2052 -1262 992 200 14 113 chr1 4897530 4897900 -277295764 - MLT1A2 LTR MaLR -41 333 1 280 294 78 17 chr1 4898318 4898498 -277295166 + L2 LINE L2 2375 2565 -749 1179 253 99 20 chr1 4898980 4899426 -277294238 - MER89 LTR ERV1 0 559 79 306 293 104 109 chr1 4899609 4899947 -277293717 - L1MDb LINE L1 -5697 712 377 378 206 41 0 chr1 4900389 4900486 -277293178 - MER89 LTR ERV1 -458 101 1 297 200 22 67 chr1 4900678 4900858 -277292806 + (TTGTG)n Simple_repeat Simple_repeat 5 176 0 360 171 40 57 chr1 4900877 4901052 -277292612 + (CTGTG)n Simple_repeat Simple_repeat 3 174 0 322 194 39 56 chr1 4901137 4901317 -277292347 + (CTGTG)n Simple_repeat Simple_repeat 3 179 0 713 246 110 75 chr1 4902049 4902532 -277291132 - MLT2B1 LTR ERVL 0 520 21 236 306 0 14 chr1 4904704 4904776 -277288888 + L2 LINE L2 3201 3271 -1 1907 124 61 164 chr1 4905505 4905982 -277287682 - MSTA LTR MaLR 0 428 1 1596 228 85 7 chr1 4906178 4906626 -277287038 - LTR53 LTR ERVL -14 505 23 2270 102 0 3 chr1 4906628 4906922 -277286742 + AluSx SINE Alu 1 293 -19 279 79 0 0 chr1 4906922 4906960 -277286704 + (TA)n Simple_repeat Simple_repeat 2 39 0 319 320 132 48 chr1 4907080 4907330 -277286334 + LTR16A1 LTR ERVL 187 457 0 387 325 49 25 chr1 4907347 4907510 -277286154 - MIR SINE MIR -31 231 65 456 173 13 0 chr1 4907513 4907588 -277286076 + AluJ/FLAM SINE Alu 2 77 -235 230 263 11 0 chr1 4907695 4907870 -277285794 + C-rich Low_complexity Low_complexity 1 177 0 342 282 12 0 chr1 4907881 4908145 -277285519 + C-rich Low_complexity Low_complexity 1 267 0 298 316 74 0 chr1 4908315 4908410 -277285254 + MIR SINE MIR 35 136 -72 495 216 123 43 chr1 4908489 4908651 -277285013 + MER5B DNA MER1_type 1 175 -3 385 213 25 65 chr1 4908807 4908978 -277284686 + MLT1C LTR MaLR 7 165 -346 1177 225 109 44 chr1 4908981 4909412 -277284252 + MLT1C LTR MaLR 1 459 -8 622 246 73 18 chr1 4909442 4909662 -277284002 + MLT1C LTR MaLR 202 433 -34 1134 239 141 10 chr1 4909892 4910289 -277283375 - MLT1C LTR MaLR -15 452 4 2290 90 3 0 chr1 4911221 4911510 -277282154 + AluSg SINE Alu 1 290 -20 546 207 155 1 chr1 4911897 4912026 -277281638 - MLT1C LTR MaLR -4 481 347 978 219 38 19 chr1 4912215 4912535 -277281129 - MLT1C LTR MaLR -141 326 1 429 276 0 0 chr1 4912552 4912650 -277281014 + MIR SINE MIR 106 203 -59 293 259 144 73 chr1 4913475 4913614 -277280050 + MLT1I LTR MaLR 1 129 -280 2278 118 0 0 chr1 4913614 4913911 -277279753 - AluSg1 SINE Alu -12 297 1 293 259 144 73 chr1 4913911 4914153 -277279511 + MLT1I LTR MaLR 129 409 0 1924 221 47 10 chr1 4914265 4914750 -277278914 + MLT1D LTR MaLR 1 503 -2 3480 129 30 38 chr1 4914806 4915410 -277278254 - MER4A LTR ERV1 -1 599 1 2417 99 0 0 chr1 4915780 4916084 -277277580 + AluSx SINE Alu 1 304 -8 2206 111 21 0 chr1 4917210 4917498 -277276166 - AluSx SINE Alu -18 294 1 25 31 0 0 chr1 4917822 4917854 -277275810 + AT_rich Low_complexity Low_complexity 1 32 0 522 167 74 105 chr1 4917854 4917963 -277275701 - L1MB2 LINE L1 -2 6169 6065 1864 145 3 41 chr1 4917963 4918281 -277275383 - AluSq SINE Alu -7 306 1 522 167 74 105 chr1 4918281 4918333 -277275331 - L1MB2 LINE L1 -106 6065 6013 358 285 95 34 chr1 4918449 4918628 -277275036 - L1ME3A LINE L1 -208 5962 5773 718 292 102 54 chr1 4918637 4918848 -277274816 - L1ME3A LINE L1 -684 5480 5280 2274 97 10 0 chr1 4918848 4919138 -277274526 - AluSg SINE Alu -17 293 1 718 292 102 54 chr1 4919138 4919482 -277274182 - L1ME3A LINE L1 -884 5280 3426 434 202 53 48 chr1 4919516 4919704 -277273960 + L1M4 LINE L1 5023 5211 -935 1293 176 90 14 chr1 4919986 4920289 -277273375 + MER61B LTR ERV1 1 425 0 5309 92 17 1 chr1 4920768 4921550 -277272114 + L1PB1 LINE L1 5352 6145 -6 1784 219 32 50 chr1 4921699 4921987 -277271677 - MLT1C LTR MaLR 0 467 190 2298 58 17 17 chr1 4921987 4922278 -277271386 - AluY SINE Alu -20 291 1 1784 219 32 50 chr1 4922278 4922464 -277271200 - MLT1C LTR MaLR -277 190 2 1495 169 4 4 chr1 4922702 4922967 -277270697 - AluJb SINE Alu 0 304 40 494 183 78 0 chr1 4923094 4923209 -277270455 + MLT1A1 LTR MaLR 242 365 0 284 209 151 93 chr1 4923414 4923444 -277270220 + MLT-int LTR MaLR 972 999 -736 2283 104 57 28 chr1 4923444 4923798 -277269866 + THE1B LTR MaLR 1 364 0 284 209 151 93 chr1 4923798 4923906 -277269758 + MLT-int LTR MaLR 999 1118 -617 1874 218 67 14 chr1 4923928 4924360 -277269304 + MLT1A1-int LTR MaLR 1267 1721 -14 1838 197 46 3 chr1 4924376 4924726 -277268938 + MLT1A1 LTR MaLR 1 365 0 514 317 94 20 chr1 4924988 4925555 -277268109 - L1MB2 LINE L1 -277 5897 5283 212 299 11 23 chr1 4925614 4925701 -277267963 + CT-rich Low_complexity Low_complexity 3 88 0 237 240 85 39 chr1 4925987 4926116 -277267548 + MLT1J1 LTR MaLR 80 214 -232 1177 260 108 42 chr1 4926283 4926334 -277267330 - L1ME LINE L1 -616 5550 5504 2818 103 0 5 chr1 4926334 4926711 -277266953 - THE1C LTR MaLR 0 375 1 1177 260 108 42 chr1 4926711 4927018 -277266646 - L1ME LINE L1 -662 5504 5218 1763 179 14 7 chr1 4927018 4927314 -277266350 - AluJb SINE Alu -14 298 1 1177 260 108 42 chr1 4927314 4927931 -277265733 - L1ME LINE L1 -948 5218 4502 950 142 45 102 chr1 4927940 4928185 -277265479 + MSTB2 LTR MaLR 1 231 -201 1764 201 36 27 chr1 4928185 4928732 -277264932 + MLT2A2 LTR ERVL 1 546 -8 806 160 43 27 chr1 4928739 4928926 -277264738 + MSTB2 LTR MaLR 243 432 0 21 57 0 0 chr1 4928945 4928980 -277264684 + AT_rich Low_complexity Low_complexity 1 35 0 1195 276 66 65 chr1 4928988 4929128 -277264536 - L1ME LINE L1 -1714 4432 4294 221 0 35 0 chr1 4929128 4929157 -277264507 + (TTTTG)n Simple_repeat Simple_repeat 1 30 0 2058 126 0 4 chr1 4929162 4929440 -277264224 - AluSx SINE Alu -35 277 1 1195 276 66 65 chr1 4929440 4930245 -277263419 - L1ME LINE L1 -1855 4291 3480 * 2441 233 51 47 chr1 4930241 4931061 -277262603 - L1ME2 LINE L1 -8 6225 5410 1516 212 123 0 chr1 4931061 4931386 -277262278 + MLT1A1 LTR MaLR 1 365 0 2441 233 51 47 chr1 4931386 4931452 -277262212 - L1ME2 LINE L1 -823 5410 5346 225 0 0 0 chr1 4931452 4931477 -277262187 + (CA)n Simple_repeat Simple_repeat 1 25 0 2441 233 51 47 chr1 4931477 4931749 -277261915 - L1ME2 LINE L1 -887 5346 5052 * 3188 219 49 58 chr1 4931748 4932389 -277261275 - L1MC/D LINE L1 -743 5403 4758 16889 30 6 1 chr1 4932389 4935144 -277258520 - L1PA3 LINE L1 -3 6152 3389 3188 219 49 58 chr1 4935144 4936103 -277257561 - L1MC/D LINE L1 -1388 4758 3811 1850 143 118 0 chr1 4936105 4936420 -277257244 + MER47A DNA MER2_type 15 366 0 1556 271 11 4 chr1 4936420 4936877 -277256787 - L1MC/D LINE L1 -2423 3723 3264 1975 217 39 30 chr1 4937400 4937814 -277255850 - L1ME2 LINE L1 -1824 4391 3969 3012 125 7 9 chr1 4937814 4938263 -277255401 - MER83 LTR ERV1 0 448 1 1975 217 39 30 chr1 4938263 4938391 -277255273 - L1ME2 LINE L1 -2246 3969 3844 364 291 64 20 chr1 4938383 4938634 -277255030 - L1ME2 LINE L1 -4181 2036 1775 * 542 239 164 39 chr1 4938647 4939262 -277254402 - L1ME2 LINE L1 -4579 1817 877 620 320 92 52 chr1 4939364 4939725 -277253939 - L1ME2 LINE L1 -5514 882 537 2052 129 7 26 chr1 4939725 4940027 -277253637 - AluSg SINE Alu -9 301 6 620 320 92 52 chr1 4940027 4940461 -277253203 - L1ME2 LINE L1 -5859 537 55 185 333 0 0 chr1 4940488 4940545 -277253119 + L2 LINE L2 2691 2747 -567 2311 157 34 31 chr1 4940613 4941160 -277252504 + MLT2A2 LTR ERVL 1 554 0 320 250 27 18 chr1 4941382 4941494 -277252170 - MIR SINE MIR -2 260 148 23 42 0 21 chr1 4941616 4941637 -277252027 + AT_rich Low_complexity Low_complexity 1 21 -26 2333 97 3 3 chr1 4941637 4941945 -277251719 + AluSp SINE Alu 3 310 -3 23 42 0 21 chr1 4941945 4941971 -277251693 + AT_rich Low_complexity Low_complexity 21 47 0 2513 319 48 15 chr1 4942749 4943826 -277249838 + HERV16 LTR ERVL 2092 3222 -1901 333 269 75 0 chr1 4944296 4944389 -277249275 + L2 LINE L2 3211 3310 -3 456 209 74 34 chr1 4944389 4944537 -277249127 + MER103 DNA DNA 13 166 0 942 207 18 0 chr1 4945050 4945214 -277248450 - FAM SINE Alu -6 169 3 1749 147 8 0 chr1 4945549 4945815 -277247849 - THE1C LTR MaLR 0 375 108 10384 131 28 6 chr1 4945819 4947348 -277246316 + THE1C-int LTR MaLR 19 1580 0 2238 127 21 29 chr1 4947348 4947726 -277245938 + THE1C LTR MaLR 1 375 0 261 258 77 0 chr1 4948140 4948236 -277245428 + MIR SINE MIR 59 163 -45 316 220 220 40 chr1 4948648 4948821 -277244843 - L1MDa LINE L1 -4650 1890 1687 2589 149 31 2 chr1 4948885 4949301 -277244363 + MSTA LTR MaLR 1 428 0 3279 137 0 4 chr1 4949547 4950043 -277243621 - LOR1a LTR ERV1 0 497 4 750 210 0 34 chr1 4950518 4950694 -277242970 - LTR9B LTR ERV1 -83 561 392 441 253 0 0 chr1 4950898 4951060 -277242604 + (CA)n Simple_repeat Simple_repeat 1 162 0 797 224 15 15 chr1 4951116 4951312 -277242352 - L1MDa LINE L1 -5919 611 416 487 347 74 6 chr1 4951339 4951691 -277241973 - L1MC4a LINE L1 -1907 5901 5526 855 293 63 16 chr1 4951791 4952332 -277241332 - L2 LINE L2 -252 3061 2498 351 0 0 0 chr1 4952334 4952373 -277241291 + (TG)n Simple_repeat Simple_repeat 2 40 0 577 216 6 11 chr1 4952461 4952637 -277241027 + (TAGA)n Simple_repeat Simple_repeat 4 178 0 298 315 11 0 chr1 4952638 4952730 -277240934 + (TGGA)n Simple_repeat Simple_repeat 4 96 0 384 254 17 0 chr1 4952734 4952911 -277240753 + (TAGA)n Simple_repeat Simple_repeat 1 180 0 502 282 96 13 chr1 4952971 4953031 -277240633 - L2 LINE L2 -880 2434 2380 1324 205 46 58 chr1 4953031 4953426 -277240238 - MLT1B LTR MaLR 0 390 1 502 282 96 13 chr1 4953426 4953666 -277239998 - L2 LINE L2 -934 2380 2109 281 178 41 55 chr1 4953863 4953936 -277239728 - L1ME LINE L1 -563 5607 5536 756 255 32 19 chr1 4954152 4954368 -277239296 - MER20 DNA MER1_type 0 219 1 1515 187 93 12 chr1 4954455 4954792 -277238872 + MSTD LTR MaLR 30 396 0 1773 29 0 5 chr1 4957861 4958071 -277235593 + L1PA4 LINE L1 5945 6153 -2 495 256 98 66 chr1 4958752 4959069 -277234595 - MLT1K LTR MaLR -1 587 261 285 214 31 0 chr1 4960125 4960223 -277233441 + CT-rich Low_complexity Low_complexity 3 103 0 203 313 17 61 chr1 4960695 4960810 -277232854 + L2 LINE L2 3161 3270 -2 1531 283 98 37 chr1 4960918 4962218 -277231446 - L1ME LINE L1 -4648 1432 64 483 107 0 0 chr1 4962255 4962330 -277231334 + (TTTC)n Simple_repeat Simple_repeat 3 77 0 2122 118 7 13 chr1 4962337 4962643 -277231021 - AluSx SINE Alu -8 304 1 200 188 0 0 chr1 4962727 4962759 -277230905 + (CTTA)n Simple_repeat Simple_repeat 2 33 0 482 267 37 12 chr1 4963056 4963217 -277230447 + MIR SINE MIR 17 181 -81 1325 216 102 12 chr1 4963276 4963619 -277230045 + MLT1A2 LTR MaLR 1 374 0 2479 158 8 0 chr1 4964772 4965172 -277228492 + MER57A LTR ERV1 1 403 0 243 133 0 0 chr1 4965313 4965358 -277228306 + (TG)n Simple_repeat Simple_repeat 2 46 0 234 62 0 0 chr1 4965717 4965749 -277227915 + (TGAA)n Simple_repeat Simple_repeat 4 35 0 233 269 30 0 chr1 4967286 4967353 -277226311 - MIR SINE MIR 0 262 194 1314 204 135 13 chr1 4967354 4967788 -277225876 - MLT1E LTR MaLR 0 593 102 380 172 0 0 chr1 4967779 4967837 -277225827 - MLT1E LTR MaLR -455 138 81 * 365 279 0 95 chr1 4968011 4968190 -277225474 - MIR SINE MIR -77 185 24 186 364 56 19 chr1 4968564 4968726 -277224938 - MIR SINE MIR -48 214 47 638 276 62 73 chr1 4970580 4971062 -277222602 + MLT1J LTR MaLR 12 488 -23 2231 119 3 0 chr1 4971134 4971437 -277222227 - AluSp SINE Alu -9 304 1 256 298 11 11 chr1 4971445 4971539 -277222125 - MIR SINE MIR -108 154 61 288 324 11 50 chr1 4972219 4972398 -277221266 - MIR SINE MIR -10 252 81 3086 138 7 43 chr1 4972554 4972966 -277220698 + L1PA16 LINE L1 5630 6019 -147 1763 168 0 34 chr1 4972966 4973297 -277220367 + AluJb SINE Alu 3 323 0 3086 138 7 43 chr1 4973297 4973440 -277220224 + L1PA16 LINE L1 6019 6166 0 578 222 149 26 chr1 4973710 4973904 -277219760 - LTR16C LTR ERVL -2 489 272 220 271 0 0 chr1 4973932 4973991 -277219673 + (ATGGTG)n Simple_repeat Simple_repeat 4 62 0 23 0 0 0 chr1 4974103 4974126 -277219538 + AT_rich Low_complexity Low_complexity 1 23 0 1340 123 5 9 chr1 4974126 4974337 -277219327 - L1PA15 LINE L1 0 6165 5956 529 326 39 25 chr1 4974551 4974913 -277218751 - L1PA13 LINE L1 -748 6049 5683 478 116 147 0 chr1 4974925 4975020 -277218644 - AluSp/q SINE Alu -2 311 203 15611 219 21 7 chr1 4975025 4979415 -277214249 - L1PA13 LINE L1 -1134 5663 1179 2232 265 23 5 chr1 4979780 4980396 -277213268 - L1ME3 LINE L1 -7 6155 5529 256 301 83 74 chr1 4980406 4980635 -277213029 + MIR SINE MIR 31 261 -1 249 325 42 17 chr1 4981543 4981663 -277212001 + MIR SINE MIR 13 135 -127 488 247 0 0 chr1 4982865 4982958 -277210706 + MER81 DNA DNA 2 94 -20 256 265 29 0 chr1 4982957 4983025 -277210639 + MER81 DNA DNA 44 113 -1 * 297 302 21 10 chr1 4983523 4983619 -277210045 + MIR SINE MIR 87 183 -79 659 207 12 0 chr1 4983691 4983860 -277209804 + (TCCA)n Simple_repeat Simple_repeat 3 173 0 1115 133 2 8 chr1 4983874 4984354 -277209310 + (TCCA)n Simple_repeat Simple_repeat 1 477 0 302 335 30 37 chr1 4984373 4984461 -277209203 - L2 LINE L2 -44 3269 3181 2748 97 8 3 chr1 4984461 4984823 -277208841 - THE1B LTR MaLR 0 364 1 302 335 30 37 chr1 4984823 4984898 -277208766 - L2 LINE L2 -132 3181 3107 324 308 125 47 chr1 4985194 4985658 -277208006 - L2 LINE L2 -582 2732 2233 1361 225 45 51 chr1 4987756 4988205 -277205459 - MER74A LTR ERVL -13 545 100 1013 160 11 6 chr1 4988307 4988788 -277204876 + (CAT)n Simple_repeat Simple_repeat 1 483 0 242 219 37 0 chr1 4988792 4988874 -277204790 + (CACCAT)n Simple_repeat Simple_repeat 2 86 0 257 215 0 31 chr1 4990450 4990515 -277203149 + MIR SINE MIR 93 155 -107 198 326 61 10 chr1 4991326 4991424 -277202240 + MIR SINE MIR 51 153 -109 307 297 79 44 chr1 4991463 4991692 -277201972 + L2 LINE L2 1816 2052 -1262 278 176 0 0 chr1 4991694 4991745 -277201919 - MLT1B LTR MaLR -41 349 299 399 206 41 0 chr1 4992740 4992837 -277200827 - MER89 LTR ERV1 -458 101 1 337 173 29 64 chr1 4993046 4993219 -277200445 + (TTGTG)n Simple_repeat Simple_repeat 5 171 0 303 206 33 60 chr1 4993240 4993424 -277200240 + (CTGTG)n Simple_repeat Simple_repeat 1 179 0 895 227 117 80 chr1 4994123 4994585 -277199079 - MLT2B1 LTR ERVL 0 520 42 221 319 0 14 chr1 4996791 4996863 -277196801 + L2 LINE L2 3201 3271 -1 1719 155 115 3 chr1 4997592 4997915 -277195749 - MSTA LTR MaLR 0 428 70 740 76 14 1 chr1 4998029 4998148 -277195516 - MSTA LTR MaLR -302 124 1 1739 225 82 7 chr1 4998344 4998793 -277194871 - LTR53 LTR ERVL -14 505 23 2151 101 0 3 chr1 4998795 4999091 -277194573 + AluSx SINE Alu 1 295 -17 279 79 0 0 chr1 4999091 4999129 -277194535 + (TA)n Simple_repeat Simple_repeat 2 39 0 420 320 132 48 chr1 4999249 4999499 -277194165 + LTR16A1 LTR ERVL 187 457 0 377 325 49 25 chr1 4999516 4999679 -277193985 - MIR SINE MIR -31 231 65 1198 198 12 12 chr1 4999681 4999924 -277193740 + AluJo SINE Alu 1 243 -69 181 318 218 13 chr1 5000032 5000271 -277193393 + L2 LINE L2 2981 3268 -4 260 359 17 0 chr1 5002389 5002506 -277191158 + L2 LINE L2 3182 3300 -13 246 62 0 0 chr1 5002506 5002538 -277191126 + (TGAA)n Simple_repeat Simple_repeat 1 32 0 2755 107 11 5 chr1 5003480 5003853 -277189811 + THE1C LTR MaLR 1 375 0 214 316 0 0 chr1 5004516 5004573 -277189091 + (CA)n Simple_repeat Simple_repeat 1 57 0 348 310 9 9 chr1 5004788 5004901 -277188763 - MER81 DNA DNA 0 114 2 2100 113 0 0 chr1 5006287 5006571 -277187093 + AluSc SINE Alu 1 287 -22 210 71 0 0 chr1 5006571 5006599 -277187065 + (TG)n Simple_repeat Simple_repeat 2 29 0 991 30 15 0 chr1 5006629 5006760 -277186904 + (TATATG)n Simple_repeat Simple_repeat 2 134 0 1178 234 114 91 chr1 5006760 5007455 -277186209 + MER21B LTR ERV1 23 733 -130 1357 214 85 55 chr1 5007567 5008001 -277185663 - MLT1C LTR MaLR -15 452 6 349 270 43 74 chr1 5008045 5008275 -277185389 + L2 LINE L2 1605 1827 -1487 194 293 0 0 chr1 5008301 5008359 -277185305 + L2 LINE L2 1924 1981 -1333 1803 203 16 18 chr1 5008373 5008757 -277184907 + MER89 LTR ERV1 175 557 -2 339 250 267 30 chr1 5008759 5009055 -277184609 + L2 LINE L2 1975 2340 -974 279 325 103 17 chr1 5009095 5009212 -277184452 - MLT1H LTR MaLR -16 533 407 254 261 61 26 chr1 5009399 5009514 -277184150 - MLT1I LTR MaLR -272 137 19 1933 144 174 11 chr1 5009565 5009933 -277183731 + MSTA LTR MaLR 1 428 0 9739 133 32 35 chr1 5009935 5011518 -277182146 + MSTA-int LTR MaLR 3 1580 0 1216 134 259 14 chr1 5011518 5011808 -277181856 + MSTA LTR MaLR 1 361 -67 1890 286 52 37 chr1 5011817 5012690 -277180974 + L1ME2 LINE L1 4420 5305 -841 820 291 43 78 chr1 5012699 5013391 -277180273 + L1MB1 LINE L1 5264 5931 -258 * 2418 229 54 57 chr1 5012791 5013600 -277180064 + L1ME2 LINE L1 5349 6155 -9 1832 133 7 4 chr1 5013640 5013918 -277179746 + AluSx SINE Alu 21 299 -13 274 207 0 0 chr1 5015466 5015524 -277178140 + Charlie5 DNA MER1_type 33 90 -2522 2846 35 15 0 chr1 5015564 5015904 -277177760 - L1PA4 LINE L1 0 6155 5811 230 303 64 9 chr1 5018021 5018130 -277175534 - MIR SINE MIR -15 247 133 2288 130 37 11 chr1 5018531 5018886 -277174778 + THE1B LTR MaLR 1 364 0 2138 226 12 53 chr1 5019039 5019544 -277174120 + MER66B LTR ERV1 1 484 -2 207 0 0 0 chr1 5020499 5020522 -277173142 + (CA)n Simple_repeat Simple_repeat 1 23 0 633 186 0 0 chr1 5021797 5021926 -277171738 + (GAGTG)n Simple_repeat Simple_repeat 2 130 0 948 146 0 0 chr1 5021927 5022105 -277171559 + (GAATG)n Simple_repeat Simple_repeat 3 180 0 348 83 0 0 chr1 5022107 5022155 -277171509 + (AATAG)n Simple_repeat Simple_repeat 4 51 0 730 274 100 20 chr1 5022381 5022680 -277170984 - MLT1I LTR MaLR 0 409 87 429 303 12 36 chr1 5022869 5023034 -277170630 - L2 LINE L2 -2 3311 3151 320 200 294 0 chr1 5023042 5023127 -277170537 + MER3 DNA MER1_type 5 114 -95 925 124 0 0 chr1 5023128 5023257 -277170407 + AluSg1 SINE Alu 1 129 -180 408 302 50 23 chr1 5024335 5024510 -277169154 + MIR SINE MIR 34 214 -48 962 120 23 0 chr1 5024657 5024667 -277168997 + (ATG)n Simple_repeat Simple_repeat 1 189 0 962 120 23 0 chr1 5024667 5024842 -277168822 + (ATG)n Simple_repeat Simple_repeat 1 179 0 984 151 0 0 chr1 5024967 5025146 -277168518 + (ATG)n Simple_repeat Simple_repeat 1 179 0 510 270 55 18 chr1 5025198 5025361 -277168303 - MIR SINE MIR -9 253 85 482 307 73 0 chr1 5026220 5026425 -277167239 - MIR SINE MIR -29 233 14 1105 104 37 0 chr1 5026862 5027026 -277166638 + THE1C LTR MaLR 3 172 -203 * 1503 150 62 11 chr1 5027024 5027297 -277166367 + THE1C LTR MaLR 89 375 0 420 19 0 0 chr1 5027990 5028042 -277165622 - THE1C LTR MaLR -201 174 123 * 997 193 42 146 chr1 5028041 5028398 -277165266 + MLT1C LTR MaLR 71 390 0 182 385 8 8 chr1 5028456 5028578 -277165086 - L2 LINE L2 -1488 1826 1705 203 242 65 0 chr1 5028716 5028778 -277164886 + L2 LINE L2 3201 3266 -6 508 271 23 8 chr1 5028969 5029102 -277164562 - MER5A DNA MER1_type 0 189 55 358 318 34 20 chr1 5028987 5029135 -277164529 + MER5A DNA MER1_type 32 181 -8 * 1848 156 0 29 chr1 5029398 5029705 -277163959 - AluJb SINE Alu -14 298 1 689 360 34 24 chr1 5030909 5031237 -277162427 + HERV16 LTR ERVL 2646 2976 -2020 1756 224 95 25 chr1 5031292 5031841 -277161823 + MER92B LTR ERV1 1 587 -49 369 202 22 22 chr1 5032093 5032182 -277161482 + MER92B LTR ERV1 546 634 -2 1421 226 45 25 chr1 5033904 5034352 -277159312 - MLT1C LTR MaLR 0 467 1 1662 115 51 90 chr1 5034361 5034751 -277158913 + THE1C LTR MaLR 1 375 0 1147 231 196 3 chr1 5035169 5035542 -277158122 + MER90 LTR ERV1 1 445 -130 753 256 10 20 chr1 5035662 5035865 -277157799 + MER90 LTR ERV1 414 614 0 245 252 191 8 chr1 5035874 5036005 -277157659 - MIR SINE MIR 0 262 108 298 231 0 50 chr1 5036110 5036231 -277157433 + (TATATG)n Simple_repeat Simple_repeat 4 118 0 340 366 8 2 chr1 5036232 5036359 -277157305 - MIR SINE MIR -54 154 28 281 219 12 61 chr1 5036381 5036463 -277157201 + L2 LINE L2 3236 3313 0 478 318 34 0 chr1 5036481 5036660 -277157004 + L1ME LINE L1 5530 5714 -456 306 73 0 0 chr1 5036902 5036943 -277156721 + (TG)n Simple_repeat Simple_repeat 2 42 0 241 206 48 0 chr1 5036945 5037008 -277156656 + GA-rich Low_complexity Low_complexity 2 67 0 1785 90 5 0 chr1 5037112 5037334 -277156330 + AluSg/x SINE Alu 77 299 -13 718 264 67 11 chr1 5037699 5037983 -277155681 - MLT1C LTR MaLR 0 467 168 5269 54 8 11 chr1 5037986 5038693 -277154971 + L1PA7 LINE L1 5450 6154 0 509 208 101 13 chr1 5038781 5038930 -277154734 - MLT1C LTR MaLR -299 168 7 218 271 112 48 chr1 5038932 5039120 -277154544 - L2 LINE L2 -649 2665 2466 353 206 118 113 chr1 5040278 5040342 -277153322 - LTR50 LTR ERVL -27 768 706 2027 132 35 0 chr1 5040342 5040630 -277153034 + AluSp SINE Alu 1 298 -15 2568 77 0 0 chr1 5040630 5040941 -277152723 + AluY SINE Alu 1 311 0 353 206 118 113 chr1 5040941 5041079 -277152585 - LTR50 LTR ERVL -88 707 564 408 246 57 8 chr1 5041624 5041746 -277151918 - MLT1J1 LTR MaLR -71 375 248 615 230 67 12 chr1 5041758 5041923 -277151741 - MLT1C LTR MaLR -7 460 287 398 290 10 5 chr1 5041923 5042136 -277151528 + (TG)n Simple_repeat Simple_repeat 1 214 0 714 250 85 4 chr1 5042883 5043119 -277150545 + MIR SINE MIR 8 262 0 316 320 0 0 chr1 5043121 5043221 -277150443 - MIR SINE MIR -2 260 161 304 257 0 55 chr1 5043441 5043550 -277150114 - MIR SINE MIR -120 142 40 753 165 0 0 chr1 5045474 5045638 -277148026 + GA-rich Low_complexity Low_complexity 1 164 0 2791 104 46 0 chr1 5045643 5046058 -277147606 + LTR1 LTR ERV1 352 785 0 1010 184 50 0 chr1 5046058 5046254 -277147410 + Tigger7 DNA MER2_type 2282 2487 0 1034 273 106 8 chr1 5047242 5047638 -277146026 + MLT1C LTR MaLR 5 439 -28 188 247 62 62 chr1 5047782 5047863 -277145801 - MIR SINE MIR -62 146 66 222 174 0 0 chr1 5048256 5048302 -277145362 + A-rich Low_complexity Low_complexity 1 46 0 302 235 37 0 chr1 5048967 5049048 -277144616 + MER5A DNA MER1_type 26 109 -80 218 224 17 17 chr1 5049040 5049098 -277144566 - MER5A DNA MER1_type -113 76 19 * 1000 258 65 53 chr1 5049931 5050349 -277143315 + MLT1C LTR MaLR 44 466 -1 847 261 108 56 chr1 5051954 5052295 -277141369 + MLT1J LTR MaLR 41 399 -112 228 343 14 0 chr1 5052456 5052526 -277141138 + L2 LINE L2 3243 3313 0 2403 130 54 2 chr1 5052535 5052720 -277140944 + MSTA LTR MaLR 1 175 -253 4035 54 4 2 chr1 5052720 5053240 -277140424 + L1PA6 LINE L1 5634 6154 0 2403 130 54 2 chr1 5053240 5053461 -277140203 + MSTA LTR MaLR 175 428 0 24 0 0 0 chr1 5053542 5053566 -277140098 + AT_rich Low_complexity Low_complexity 1 24 0 1237 232 41 11 chr1 5054284 5054646 -277139018 + MLT1A2 LTR MaLR 2 374 0 1744 222 71 5 chr1 5054925 5055348 -277138316 + MLT1C LTR MaLR 1 451 -16 191 277 67 76 chr1 5056859 5056978 -277136686 + MIR3 SINE MIR 84 201 -7 * 425 215 82 138 chr1 5056943 5057138 -277136526 - MIR SINE MIR -49 213 30 471 206 14 7 chr1 5057297 5057438 -277136226 + (ATG)n Simple_repeat Simple_repeat 2 143 0 510 217 18 0 chr1 5057466 5057632 -277136032 + (ATG)n Simple_repeat Simple_repeat 2 170 0 263 194 32 0 chr1 5057637 5057699 -277135965 + (ATGGTG)n Simple_repeat Simple_repeat 2 65 0 483 218 11 11 chr1 5057709 5057883 -277135781 + (ATG)n Simple_repeat Simple_repeat 1 174 0 730 169 6 12 chr1 5057899 5058071 -277135593 + (ATG)n Simple_repeat Simple_repeat 2 172 0 299 202 11 0 chr1 5058085 5058174 -277135490 + (ATG)n Simple_repeat Simple_repeat 2 91 0 473 336 22 18 chr1 5058302 5058437 -277135227 - L2 LINE L2 -691 2623 2485 1074 205 14 0 chr1 5058437 5058652 -277135012 - MER20 DNA MER1_type 0 219 2 473 336 22 18 chr1 5058652 5058742 -277134922 - L2 LINE L2 -829 2485 2397 * 487 245 0 0 chr1 5058738 5058836 -277134828 + L2 LINE L2 3216 3313 0 * 1193 326 67 20 chr1 5058835 5059495 -277134169 - L2 LINE L2 -902 2412 1722 1074 165 385 15 chr1 5059496 5059836 -277133828 - MER31B LTR ERV1 0 466 1 203 210 32 0 chr1 5059851 5059913 -277133751 - L2 LINE L2 -1612 1702 1639 432 254 0 27 chr1 5061040 5061150 -277132514 + (CCCA)n Simple_repeat Simple_repeat 2 108 0 489 253 0 0 chr1 5061155 5061317 -277132347 + (TCCA)n Simple_repeat Simple_repeat 2 163 0 801 220 3 7 chr1 5061347 5061656 -277132008 + (TCCA)n Simple_repeat Simple_repeat 1 307 0 269 258 17 17 chr1 5061667 5061713 -277131951 + (CCCA)n Simple_repeat Simple_repeat 3 48 -132 1963 154 118 26 chr1 5061713 5062103 -277131561 - MSTA LTR MaLR -2 426 1 269 258 17 17 chr1 5062103 5062234 -277131430 + (CCCA)n Simple_repeat Simple_repeat 47 180 0 * 362 282 6 0 chr1 5062227 5062397 -277131267 + (TCCA)n Simple_repeat Simple_repeat 1 171 0 214 327 77 0 chr1 5062792 5062896 -277130768 - L2 LINE L2 -517 2797 2686 621 315 28 0 chr1 5063034 5063247 -277130417 - MIR SINE MIR -29 233 15 2259 136 63 29 chr1 5063356 5063768 -277129896 - MSTB LTR MaLR 0 426 1 1463 257 46 33 chr1 5064043 5064587 -277129077 + L1ME2 LINE L1 5504 6054 -110 2161 112 31 3 chr1 5064590 5064926 -277128738 - AluSg SINE Alu 0 349 6 267 262 107 0 chr1 5064936 5065039 -277128625 + L1ME2 LINE L1 6041 6154 -10 254 194 15 0 chr1 5065075 5065142 -277128522 + GA-rich Low_complexity Low_complexity 4 71 0 362 317 83 17 chr1 5066840 5067095 -277126569 + L1ME4a LINE L1 5618 5887 -234 1616 179 12 52 chr1 5067098 5067423 -277126241 + AluJo SINE Alu 1 312 0 336 102 0 0 chr1 5067425 5067474 -277126190 + (GGA)n Simple_repeat Simple_repeat 3 51 0 1536 199 62 17 chr1 5068233 5068585 -277125079 - MLT1B LTR MaLR -22 368 1 1864 136 0 0 chr1 5068660 5068911 -277124753 + AluSx SINE Alu 40 290 -22 3558 108 25 56 chr1 5069513 5070589 -277123075 - MER11A LTR ERVK 0 1071 1 515 253 94 109 chr1 5070591 5070847 -277122817 + MER77 LTR ERV1 60 318 -287 2570 113 0 0 chr1 5070847 5071211 -277122453 - THE1B LTR MaLR 0 364 1 515 253 94 109 chr1 5071211 5071484 -277122180 + MER77 LTR ERV1 318 601 -4 237 227 30 15 chr1 5071485 5071551 -277122113 + MER21B LTR ERV1 613 679 -184 28 0 0 0 chr1 5071633 5071661 -277122003 + AT_rich Low_complexity Low_complexity 1 28 0 1645 176 56 14 chr1 5072366 5072775 -277120889 + MLT1C LTR MaLR 1 467 0 352 331 83 35 chr1 5073392 5073418 -277120246 - MLT1L LTR MaLR 0 615 592 2198 134 111 8 chr1 5073418 5073806 -277119858 - MSTA LTR MaLR 0 428 1 352 331 83 35 chr1 5073806 5074033 -277119631 - MLT1L LTR MaLR -23 592 350 1981 143 28 33 chr1 5074462 5074825 -277118839 + THE1B LTR MaLR 1 361 -3 1412 181 7 34 chr1 5075166 5075459 -277118205 - MLT1C LTR MaLR -31 436 152 881 179 10 51 chr1 5075458 5075654 -277118010 - MLT1C LTR MaLR -279 188 1 * 456 236 42 56 chr1 5076610 5076754 -277116910 + MIR SINE MIR 85 226 -36 208 333 12 0 chr1 5076771 5076852 -277116812 + (TG)n Simple_repeat Simple_repeat 1 82 0 436 288 41 35 chr1 5076859 5077029 -277116635 - L2 LINE L2 -28 3285 3115 669 327 40 4 chr1 5077137 5077415 -277116249 - MLT1I LTR MaLR -3 406 119 265 241 45 62 chr1 5077559 5077671 -277115993 - MIR SINE MIR -119 143 34 2241 171 24 31 chr1 5077730 5078151 -277115513 + MSTB LTR MaLR 9 426 0 300 322 131 20 chr1 5078970 5079169 -277114495 - MIR SINE MIR -34 228 8 5342 205 29 30 chr1 5079945 5079964 -277113700 + L1MC1 LINE L1 4065 4083 -2250 2450 89 47 6 chr1 5079964 5080324 -277113340 + THE1C LTR MaLR 1 375 0 5342 205 29 30 chr1 5080324 5082563 -277111101 + L1MC1 LINE L1 4083 6333 0 400 176 232 31 chr1 5082565 5082692 -277110972 + L1ME1 LINE L1 6024 6334 0 1641 216 29 3 chr1 5083543 5083894 -277109770 + MLT1A1 LTR MaLR 6 365 0 354 23 0 0 chr1 5086914 5086957 -277106707 + (TG)n Simple_repeat Simple_repeat 1 43 0 560 286 7 0 chr1 5087818 5087965 -277105699 + MER3 DNA MER1_type 1 148 -61 3765 209 47 19 chr1 5088700 5089503 -277104161 - LTR1B LTR ERV1 0 826 1 258 101 45 45 chr1 5090592 5090681 -277102983 + (TTAAA)n Simple_repeat Simple_repeat 4 92 0 1821 184 10 7 chr1 5090863 5091167 -277102497 - AluJo SINE Alu -7 305 1 2518 181 89 20 chr1 5091628 5092236 -277101428 + L1MC3 LINE L1 7124 7773 -12 868 210 28 40 chr1 5092257 5092509 -277101155 + L1MB3 LINE L1 5931 6179 -4 2332 56 20 0 chr1 5092537 5092839 -277100825 - L1PA8 LINE L1 -2 6170 5863 2295 80 0 0 chr1 5092840 5093154 -277100510 + L1PA8 LINE L1 5573 5886 -286 379 356 54 0 chr1 5094230 5094379 -277099285 - MER5B DNA MER1_type -16 162 6 2030 149 3 3 chr1 5095712 5096008 -277097656 - AluSx SINE Alu -14 298 3 260 265 147 29 chr1 5097555 5097691 -277095973 + L2 LINE L2 2916 3067 -246 354 292 70 39 chr1 5097712 5098274 -277095390 - L1MC/D LINE L1 -727 5443 4903 492 283 143 12 chr1 5098302 5098553 -277095111 - MLT1J LTR MaLR -2 509 226 2407 122 111 8 chr1 5098857 5099243 -277094421 + MSTB LTR MaLR 1 426 0 586 309 66 18 chr1 5099306 5099821 -277093843 - L1MC/D LINE L1 -1478 4668 4129 235 185 19 37 chr1 5099927 5099981 -277093683 + CT-rich Low_complexity Low_complexity 3 55 0 4076 133 13 39 chr1 5100087 5100803 -277092861 - MER50 LTR ERV1 -24 710 14 488 294 46 18 chr1 5100926 5101144 -277092520 - L1MC/D LINE L1 -2336 3810 3587 21 0 0 0 chr1 5101218 5101239 -277092425 + AT_rich Low_complexity Low_complexity 1 21 0 386 282 112 30 chr1 5101248 5101723 -277091941 - L1MC/D LINE L1 -2751 3395 2882 367 280 158 41 chr1 5101787 5102181 -277091483 - L1MDa LINE L1 -2805 3735 2330 287 304 43 52 chr1 5102254 5102580 -277091084 - HAL1 LINE L1 -761 1746 1424 228 296 78 39 chr1 5102650 5102907 -277090757 - L1MDa LINE L1 -4862 1668 1402 1896 160 0 11 chr1 5102948 5103269 -277090395 + AluJb SINE Alu 3 320 0 231 36 0 0 chr1 5104632 5104660 -277089004 + (TG)n Simple_repeat Simple_repeat 1 28 0 1777 159 0 17 chr1 5105426 5105722 -277087942 + AluSx SINE Alu 22 312 0 262 353 24 39 chr1 5105923 5106130 -277087534 - L2 LINE L2 -1 3312 3109 228 224 0 20 chr1 5107015 5107064 -277086600 + CT-rich Low_complexity Low_complexity 3 50 0 416 303 92 16 chr1 5107590 5107775 -277085889 + MIR SINE MIR 63 261 -1 188 296 34 80 chr1 5107928 5108016 -277085648 - L2 LINE L2 -4 3268 3185 1293 215 45 53 chr1 5108063 5108439 -277085225 + MLT1D LTR MaLR 1 373 -132 1439 138 58 7 chr1 5108440 5108629 -277085035 - MER61D LTR ERV1 0 501 323 468 0 0 0 chr1 5108629 5108681 -277084983 + (TG)n Simple_repeat Simple_repeat 2 53 0 1439 138 58 7 chr1 5108681 5108897 -277084767 - MER61D LTR ERV1 -178 323 1 528 208 25 0 chr1 5108901 5109021 -277084643 + MLT1D LTR MaLR 375 497 -8 408 278 0 53 chr1 5109057 5109208 -277084456 - L2 LINE L2 0 3313 3171 26 50 0 0 chr1 5110646 5110686 -277082978 + AT_rich Low_complexity Low_complexity 1 40 0 231 200 0 0 chr1 5111322 5111367 -277082297 + (CCCTG)n Simple_repeat Simple_repeat 4 48 0 254 269 172 59 chr1 5111367 5111757 -277081907 + LTR16A1 LTR ERVL 18 451 -6 567 236 50 0 chr1 5111805 5111945 -277081719 + MLT1C LTR MaLR 4 150 -240 508 266 156 0 chr1 5112178 5112370 -277081294 + MER31B LTR ERV1 220 441 -25 1105 218 27 27 chr1 5112395 5112693 -277080971 + MLT1C LTR MaLR 166 463 -4 2019 169 21 3 chr1 5112768 5113105 -277080559 + MER61A LTR ERV1 1 343 0 234 315 11 44 chr1 5114299 5114480 -277079184 + (CCCCG)n Simple_repeat Simple_repeat 5 179 0 215 83 0 83 chr1 5115288 5115336 -277078328 + (TG)n Simple_repeat Simple_repeat 1 44 0 201 217 0 0 chr1 5115476 5115559 -277078105 + (TG)n Simple_repeat Simple_repeat 1 83 0 180 204 27 48 chr1 5115724 5115871 -277077793 + (TATATG)n Simple_repeat Simple_repeat 1 144 0 490 257 0 22 chr1 5116091 5116274 -277077390 + (CATA)n Simple_repeat Simple_repeat 1 179 0 237 296 0 0 chr1 5116268 5116366 -277077298 + (TA)n Simple_repeat Simple_repeat 2 99 0 * 538 231 0 22 chr1 5116380 5116562 -277077102 + (CATA)n Simple_repeat Simple_repeat 3 180 0 486 190 0 0 chr1 5117155 5117234 -277076430 + MER21B LTR ERV1 12 90 -773 2157 249 60 18 chr1 5117360 5117982 -277075682 + MER21B LTR ERV1 138 785 -78 1748 185 3 55 chr1 5118170 5118329 -277075335 + MLT1A1 LTR MaLR 1 167 -198 959 128 0 0 chr1 5118329 5118462 -277075202 + FLAM_C SINE Alu 1 133 0 1748 185 3 55 chr1 5118462 5118681 -277074983 + MLT1A1 LTR MaLR 167 359 -6 289 216 27 14 chr1 5119104 5119178 -277074486 + MLT1I LTR MaLR 308 382 -27 2294 132 3 0 chr1 5120225 5120535 -277073129 + AluSp SINE Alu 1 311 -2 186 155 36 179 chr1 5122485 5122569 -277071095 + L3 LINE CR1 227 298 -1279 2817 190 52 34 chr1 5122729 5122779 -277070885 - L1MB3 LINE L1 0 6183 6135 2326 90 7 7 chr1 5122779 5123079 -277070585 - AluSx SINE Alu -12 300 1 2084 144 3 0 chr1 5123082 5123374 -277070290 - AluSx SINE Alu -19 293 1 2817 190 52 34 chr1 5123374 5124029 -277069635 - L1MB3 LINE L1 -49 6134 5461 792 202 10 52 chr1 5124029 5124222 -277069442 + MER58A DNA MER1_type 40 224 0 417 226 0 0 chr1 5124314 5124407 -277069257 + L1MA7 LINE L1 6196 6288 -3 198 302 16 16 chr1 5124885 5124948 -277068716 - MIR SINE MIR -2 260 198 587 216 144 10 chr1 5125027 5125235 -277068429 - MER69 DNA AcHobo -2 2524 2289 1337 153 97 0 chr1 5125326 5125574 -277068090 + MLT1B LTR MaLR 1 272 -118 2607 86 77 20 chr1 5125574 5125954 -277067710 - MSTA LTR MaLR 0 428 22 1934 140 184 11 chr1 5125954 5126319 -277067345 + MSTA LTR MaLR 1 428 0 2607 86 77 20 chr1 5126319 5126343 -277067321 - MSTA LTR MaLR -406 22 1 694 177 0 0 chr1 5126343 5126466 -277067198 + MLT1B LTR MaLR 268 390 0 544 238 60 38 chr1 5126466 5126651 -277067013 - MER69 DNA AcHobo -2170 356 168 980 221 0 0 chr1 5127960 5128159 -277065505 + MLT1B LTR MaLR 192 390 0 444 327 30 49 chr1 5128165 5128431 -277065233 - L1MB3 LINE L1 -913 5233 4973 3103 160 78 66 chr1 5128985 5129668 -277063996 - LTR8 LTR ERV1 0 691 1 555 333 83 22 chr1 5129823 5130501 -277063163 - L1MB3 LINE L1 -1438 4708 3990 334 269 211 27 chr1 5130850 5131073 -277062591 - L2 LINE L2 -804 2510 2247 326 326 30 68 chr1 5131170 5131487 -277062177 - L1MEd LINE L1 -5366 753 393 211 79 79 87 chr1 5131657 5131783 -277061881 + (CACCT)n Simple_repeat Simple_repeat 1 125 0 466 280 86 5 chr1 5131908 5132094 -277061570 - L1MEd LINE L1 -5917 202 2 326 302 22 7 chr1 5132656 5132795 -277060869 + MLT2C1 LTR ERVL 58 198 -199 * 1277 246 96 46 chr1 5132682 5133203 -277060461 + MLT1E2 LTR MaLR 80 626 0 2291 113 0 0 chr1 5133230 5133532 -277060132 - AluSg SINE Alu -8 302 1 258 331 138 37 chr1 5134116 5134412 -277059252 + L2 LINE L2 2863 3188 -84 2413 145 54 2 chr1 5134763 5135225 -277058439 + LTR19A LTR ERV1 1 486 0 431 200 16 96 chr1 5135303 5135428 -277058236 + MER58A DNA MER1_type 5 119 0 638 131 0 10 chr1 5135449 5135548 -277058116 + MER4A LTR ERV1 1 98 -566 1930 113 3 24 chr1 5135548 5135901 -277057763 + MER4A LTR ERV1 261 664 0 262 269 0 13 chr1 5135906 5135984 -277057680 + MER58A DNA MER1_type 145 221 -3 273 319 21 49 chr1 5136112 5136256 -277057408 + MIR SINE MIR 72 211 -51 21 0 0 0 chr1 5137048 5137069 -277056595 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr1 5137193 5137214 -277056450 + AT_rich Low_complexity Low_complexity 1 21 0 1077 152 11 0 chr1 5137221 5137405 -277056259 - L1PA15 LINE L1 -13 6152 5967 301 310 70 14 chr1 5137520 5137662 -277056002 + MIR SINE MIR 70 219 -43 2468 99 0 0 chr1 5137908 5138221 -277055443 + AluSq SINE Alu 1 313 0 1489 194 19 16 chr1 5138310 5138424 -277055240 - L1MA8 LINE L1 -4 6287 6175 2516 144 16 11 chr1 5138424 5138867 -277054797 + MER65A LTR ERV1 1 445 0 1489 194 19 16 chr1 5138867 5139062 -277054602 - L1MA8 LINE L1 -116 6175 5977 1221 211 71 6 chr1 5139741 5140063 -277053601 - MER89 LTR ERV1 -9 550 208 847 178 29 11 chr1 5140270 5140444 -277053220 + MLT1A1 LTR MaLR 1 177 -188 1480 186 11 55 chr1 5140452 5140818 -277052846 - L1 LINE L1 -840 5306 4957 5403 140 3 21 chr1 5140820 5141441 -277052223 + L1MA6 LINE L1 5356 5955 -345 2033 132 10 23 chr1 5141441 5141751 -277051913 + AluY SINE Alu 1 306 -5 5403 140 3 21 chr1 5141751 5142091 -277051573 + L1MA6 LINE L1 5955 6300 0 1120 192 27 5 chr1 5142102 5142321 -277051343 + MLT1A1 LTR MaLR 142 365 0 241 236 22 67 chr1 5142963 5143052 -277050612 + L2 LINE L2 3187 3271 -1 204 254 16 32 chr1 5143316 5143379 -277050285 + MIR3 SINE MIR 15 76 -132 1989 168 0 0 chr1 5143486 5143790 -277049874 + AluJb SINE Alu 9 312 0 1917 246 17 2 chr1 5143872 5144335 -277049329 - L1MB5 LINE L1 -1 6173 5704 528 96 0 0 chr1 5144526 5144599 -277049065 + THE1B LTR MaLR 1 73 -291 1809 179 24 3 chr1 5144599 5144940 -277048724 + THE1A LTR MaLR 7 354 -1 2175 122 3 0 chr1 5145075 5145369 -277048295 - AluSc SINE Alu -14 295 1 1073 157 0 0 chr1 5145748 5145914 -277047750 + FRAM SINE Alu 1 166 0 189 375 0 29 chr1 5145983 5146087 -277047577 + L3 LINE CR1 1402 1502 -75 352 258 52 71 chr1 5146111 5146141 -277047523 - MIR SINE MIR -91 171 142 2249 129 7 0 chr1 5146141 5146444 -277047220 - AluSq SINE Alu -8 305 1 352 258 52 71 chr1 5146444 5146568 -277047096 - MIR SINE MIR -120 142 20 869 287 6 18 chr1 5146597 5146928 -277046736 - L1ME4a LINE L1 -203 5918 5592 341 345 72 52 chr1 5147312 5147796 -277045868 + MLT1J LTR MaLR 3 496 -15 245 382 89 21 chr1 5148084 5148275 -277045389 + MIR SINE MIR 47 250 -12 24 0 0 0 chr1 5149741 5149765 -277043899 + AT_rich Low_complexity Low_complexity 1 24 0 618 297 32 86 chr1 5150394 5150802 -277042862 + L2 LINE L2 2922 3307 -6 1081 225 29 29 chr1 5152032 5152348 -277041316 + LTR53 LTR ERVL 204 519 0 227 222 194 9 chr1 5152544 5152652 -277041012 + L2 LINE L2 3141 3268 -4 1833 187 11 125 chr1 5153344 5153365 -277040299 + L1MB8 LINE L1 5623 5645 -533 2284 102 36 33 chr1 5153365 5153728 -277039936 + THE1B LTR MaLR 1 364 0 1833 187 11 125 chr1 5153728 5153982 -277039682 + L1MB8 LINE L1 5645 5790 -388 2403 76 3 10 chr1 5153982 5154283 -277039381 + AluSg SINE Alu 1 299 -11 1833 187 11 125 chr1 5154283 5154632 -277039032 + L1MB8 LINE L1 5790 6177 -1 2272 102 0 0 chr1 5156179 5156492 -277037172 - AluSx SINE Alu 0 313 1 1181 182 40 16 chr1 5156658 5156911 -277036753 + MLT1B LTR MaLR 111 369 -21 1531 231 56 7 chr1 5157095 5157540 -277036124 - MLT1C LTR MaLR 0 467 1 21 36 0 0 chr1 5158669 5158697 -277034967 + AT_rich Low_complexity Low_complexity 1 28 0 506 235 0 3 chr1 5159277 5159580 -277034084 + (CA)n Simple_repeat Simple_repeat 1 301 0 2364 103 0 0 chr1 5159633 5159933 -277033731 + AluSq SINE Alu 1 300 -13 343 266 133 36 chr1 5160552 5160816 -277032848 - MLT1H1 LTR MaLR -10 539 189 300 146 0 0 chr1 5160817 5160865 -277032799 + MLT2B1 LTR ERVL 1 48 -472 978 213 21 28 chr1 5160866 5161194 -277032470 + MLT2B1 LTR ERVL 149 520 0 1895 145 37 14 chr1 5161227 5161397 -277032267 - AluSx SINE Alu -9 303 122 285 51 0 0 chr1 5161397 5161436 -277032228 + (TTTA)n Simple_repeat Simple_repeat 2 40 0 1895 145 37 14 chr1 5161436 5161561 -277032103 - AluSx SINE Alu -190 122 1 430 267 44 7 chr1 5161561 5161685 -277031979 - MLT1H1 LTR MaLR -423 132 1 1894 164 59 16 chr1 5162115 5162486 -277031178 - MLT1B LTR MaLR -3 387 1 26 30 0 0 chr1 5162731 5162764 -277030900 + AT_rich Low_complexity Low_complexity 1 33 0 281 243 81 27 chr1 5163682 5163793 -277029871 - MLT1K LTR MaLR -7 581 465 476 292 7 0 chr1 5163979 5164116 -277029548 + MIR SINE MIR 84 221 -41 432 301 20 33 chr1 5164322 5164475 -277029189 + MIR SINE MIR 96 246 -16 1557 259 45 87 chr1 5164728 5165716 -277027948 - L1MCc LINE L1 -4848 1574 657 1390 285 22 22 chr1 5165806 5166259 -277027405 - L1MCc LINE L1 -5954 469 17 505 294 72 21 chr1 5166259 5166453 -277027211 - MIR SINE MIR -57 205 2 327 347 41 0 chr1 5166619 5166766 -277026898 + MIR SINE MIR 8 160 -102 5093 112 38 17 chr1 5166778 5167643 -277026021 - L1PB2 LINE L1 -3 6148 5266 192 40 0 0 chr1 5167729 5167754 -277025910 + (TG)n Simple_repeat Simple_repeat 2 26 0 409 341 38 44 chr1 5167878 5168195 -277025469 - L2 LINE L2 -2 3311 2997 625 327 66 36 chr1 5168206 5168646 -277025018 + L2 LINE L2 2859 3311 -2 300 314 31 14 chr1 5169773 5169927 -277023737 - MLT1H1 LTR MaLR -1 554 400 254 211 84 0 chr1 5170171 5170242 -277023422 - MLT1H1 LTR MaLR -478 77 1 199 340 147 0 chr1 5171803 5171959 -277021705 - L2 LINE L2 -95 3177 2999 764 174 7 0 chr1 5174259 5174414 -277019250 + L1MB5 LINE L1 6017 6172 -2 213 255 138 0 chr1 5175347 5175441 -277018223 - L2 LINE L2 -5 3267 3161 962 209 134 110 chr1 5175473 5175919 -277017745 - MLT1C LTR MaLR -10 457 1 24 0 0 0 chr1 5175935 5175959 -277017705 + AT_rich Low_complexity Low_complexity 1 24 0 302 285 85 72 chr1 5176021 5176256 -277017408 - L2 LINE L2 -180 3092 2855 275 85 0 0 chr1 5178376 5178423 -277015241 - L1PA3 LINE L1 0 6155 6109 * 568 79 22 0 chr1 5178421 5178510 -277015154 + L1P2 LINE L1 5429 5519 -635 * 1622 42 12 6 chr1 5178508 5178787 -277014877 - L1P2 LINE L1 -716 5438 5159 596 215 94 54 chr1 5178806 5179029 -277014635 + L2 LINE L2 3082 3313 0 702 210 11 11 chr1 5179099 5179275 -277014389 - MER53 DNA DNA -13 176 1 718 317 189 18 chr1 5179318 5180078 -277013586 + L2 LINE L2 1610 2499 -815 2608 201 77 4 chr1 5180090 5180652 -277013012 + MER77 LTR ERV1 1 603 -2 722 227 145 0 chr1 5180959 5181131 -277012533 - MLT1D LTR MaLR 0 505 309 2035 172 36 27 chr1 5181244 5181792 -277011872 + MLT2A2 LTR ERVL 1 554 0 388 246 107 0 chr1 5181792 5181911 -277011753 - MLT1D LTR MaLR -329 138 7 324 310 26 26 chr1 5181918 5182073 -277011591 + L2 LINE L2 2895 3049 -264 260 276 143 0 chr1 5182373 5182471 -277011193 + L2 LINE L2 3202 3313 0 240 307 0 0 chr1 5184493 5184672 -277008992 + (CA)n Simple_repeat Simple_repeat 2 180 0 288 258 0 0 chr1 5184754 5184878 -277008786 + (CA)n Simple_repeat Simple_repeat 2 125 0 182 290 7 0 chr1 5184944 5185082 -277008582 + (CA)n Simple_repeat Simple_repeat 1 139 0 180 238 0 0 chr1 5185120 5185183 -277008481 + (CA)n Simple_repeat Simple_repeat 1 63 0 258 32 0 0 chr1 5185236 5185267 -277008397 + (TC)n Simple_repeat Simple_repeat 1 31 0 234 0 0 0 chr1 5185266 5185292 -277008372 + (CA)n Simple_repeat Simple_repeat 1 26 0 * 1187 265 61 82 chr1 5185856 5186397 -277007267 - MER21B LTR ERV1 -149 714 188 2230 106 3 3 chr1 5186397 5186690 -277006974 + AluSx SINE Alu 1 293 -19 1187 265 61 82 chr1 5186690 5186817 -277006847 - MER21B LTR ERV1 -675 188 60 1932 115 0 22 chr1 5187349 5187619 -277006045 - AluSx SINE Alu -14 298 35 273 319 132 24 chr1 5187934 5188185 -277005479 + L2 LINE L2 3021 3298 -15 2973 13 0 0 chr1 5188370 5188686 -277004978 - AluYb8 SINE Alu -2 316 1 200 316 26 0 chr1 5188845 5188921 -277004743 + L2 LINE L2 2292 2369 -945 1584 194 35 58 chr1 5189794 5190171 -277003493 - MLT1A2 LTR MaLR -4 370 3 613 284 77 37 chr1 5191449 5191605 -277002059 + L1MC4 LINE L1 6771 6919 -1123 2187 127 16 3 chr1 5191605 5191913 -277001751 + AluSx SINE Alu 1 312 0 613 284 77 37 chr1 5191913 5192213 -277001451 + L1MC4 LINE L1 6919 7245 -797 1639 174 18 12 chr1 5192224 5192552 -277001112 + MLT1B LTR MaLR 6 335 -55 674 241 119 53 chr1 5192689 5193008 -277000656 + L1MC4 LINE L1 7334 7673 -369 1190 207 171 7 chr1 5193559 5193868 -276999796 + MLT1A1 LTR MaLR 6 365 0 265 164 45 60 chr1 5193904 5193971 -276999693 - MER45 DNA AcHobo -951 89 24 651 150 34 10 chr1 5195039 5195247 -276998417 - L1MB1 LINE L1 0 6168 5923 * 765 191 75 5 chr1 5195246 5195434 -276998230 + L1MB1 LINE L1 5714 5914 -254 3520 37 105 0 chr1 5196450 5196909 -276996755 + L1PA4 LINE L1 5645 6151 -4 339 25 0 0 chr1 5196919 5196959 -276996705 + (A)n Simple_repeat Simple_repeat 1 40 0 820 157 7 41 chr1 5197163 5197181 -276996483 - AluJb SINE Alu -12 300 283 258 32 0 0 chr1 5197181 5197212 -276996452 + (TCCCC)n Simple_repeat Simple_repeat 1 31 0 485 31 0 16 chr1 5197212 5197276 -276996388 + (TTTTC)n Simple_repeat Simple_repeat 5 67 0 820 157 7 41 chr1 5197276 5197403 -276996261 - AluJb SINE Alu -27 285 159 279 0 0 0 chr1 5197448 5197479 -276996185 + (TG)n Simple_repeat Simple_repeat 2 32 0 477 170 21 17 chr1 5199108 5199285 -276994379 - MER20 DNA MER1_type -6 213 3 778 267 5 5 chr1 5200062 5200272 -276993392 + MER58 DNA MER1_type 27 236 -105 297 250 6 11 chr1 5200706 5200886 -276992778 + GA-rich Low_complexity Low_complexity 2 180 0 594 221 194 46 chr1 5203980 5204305 -276989359 + MLT1C LTR MaLR 34 406 -61 1301 289 12 0 chr1 5204396 5204732 -276988932 - MER58B DNA MER1_type -1 340 1 1093 226 50 61 chr1 5207308 5207769 -276985895 + MLT1C LTR MaLR 2 457 -10 370 277 54 0 chr1 5210101 5210213 -276983451 - L2 LINE L2 0 3313 3196 312 231 32 142 chr1 5210355 5210709 -276982955 - MLT1K LTR MaLR -340 248 7 * 1619 191 70 0 chr1 5210708 5211037 -276982627 + MLT2D LTR ERVL 8 359 -55 1046 22 22 43 chr1 5211074 5211258 -276982406 + (TCTA)n Simple_repeat Simple_repeat 1 180 0 333 0 0 0 chr1 5211272 5211309 -276982355 + (TC)n Simple_repeat Simple_repeat 2 38 0 192 97 0 0 chr1 5211325 5211356 -276982308 + (GA)n Simple_repeat Simple_repeat 1 31 0 843 225 28 0 chr1 5212367 5212545 -276981119 - MER5A DNA MER1_type -4 185 3 327 104 0 0 chr1 5213064 5213112 -276980552 + (ATG)n Simple_repeat Simple_repeat 3 50 0 283 375 0 0 chr1 5213368 5213464 -276980200 + L2 LINE L2 2953 3048 -224 693 269 66 0 chr1 5213516 5213713 -276979951 + MER58A DNA MER1_type 1 210 -14 330 353 49 0 chr1 5213770 5213892 -276979772 + L2 LINE L2 3140 3267 -5 2855 233 35 9 chr1 5214243 5214879 -276978785 + MER82 DNA MER2_type 2 653 0 1073 267 50 11 chr1 5215419 5215778 -276977886 + L1MC4a LINE L1 5552 5924 -1884 2385 89 0 19 chr1 5217369 5217685 -276975979 + AluSg SINE Alu 1 310 0 2003 124 6 47 chr1 5218930 5219252 -276974412 + AluSx SINE Alu 1 309 -3 1982 192 5 13 chr1 5219676 5220051 -276973613 + MLT2D LTR ERVL 1 374 -40 411 21 0 0 chr1 5220051 5220099 -276973565 + (CA)n Simple_repeat Simple_repeat 1 48 0 1982 192 5 13 chr1 5220099 5220118 -276973546 + MLT2D LTR ERVL 374 392 -22 335 352 29 0 chr1 5220384 5220489 -276973175 + MIR SINE MIR 72 179 -83 1603 167 4 4 chr1 5221417 5221662 -276972002 + AluJb SINE Alu 2 246 -66 448 315 28 17 chr1 5221756 5221937 -276971727 + MIR SINE MIR 32 214 -48 965 283 114 0 chr1 5222256 5222669 -276970995 + L1MC5 LINE L1 5430 5889 -1919 798 128 138 26 chr1 5222767 5222908 -276970756 + L1MD3 LINE L1 6897 7067 -928 192 40 0 0 chr1 5222908 5222933 -276970731 + (CAAT)n Simple_repeat Simple_repeat 4 28 0 798 128 138 26 chr1 5222933 5222986 -276970678 + L1MD3 LINE L1 7067 7113 -882 338 308 0 0 chr1 5222989 5223080 -276970584 + MLT1F1 LTR MaLR 35 125 -442 2538 213 20 19 chr1 5223080 5223198 -276970466 + L1MD3 LINE L1 7404 7520 -475 2722 107 0 6 chr1 5223198 5223564 -276970100 + THE1B LTR MaLR 1 364 0 2538 213 20 19 chr1 5223564 5224036 -276969628 + L1MD3 LINE L1 7520 7995 0 24 32 0 0 chr1 5224036 5224067 -276969597 + AT_rich Low_complexity Low_complexity 1 31 0 28 29 0 0 chr1 5224201 5224236 -276969428 + AT_rich Low_complexity Low_complexity 1 35 0 302 184 66 0 chr1 5224257 5224333 -276969331 + L1 LINE L1 4924 5004 -1142 578 323 54 17 chr1 5224567 5224990 -276968674 + L1MC5 LINE L1 6415 6852 -960 2254 128 0 6 chr1 5225113 5225426 -276968238 + AluSq SINE Alu 1 311 -2 269 303 62 78 chr1 5225633 5225850 -276967814 + L1M4 LINE L1 4544 4763 -1383 2024 142 0 37 chr1 5225850 5226174 -276967490 + AluSx SINE Alu 1 312 0 269 303 62 78 chr1 5226174 5226646 -276967018 + L1M4 LINE L1 4763 5222 -924 * 4065 212 87 16 chr1 5226636 5227115 -276966549 + L1ME3 LINE L1 4135 4579 -1567 288 0 0 0 chr1 5227115 5227147 -276966517 + (ATTG)n Simple_repeat Simple_repeat 1 32 0 4065 212 87 16 chr1 5227147 5227845 -276965819 + L1ME3 LINE L1 4579 5395 -751 1748 190 19 13 chr1 5227854 5228187 -276965477 + L1MB7 LINE L1 5784 6114 -70 243 0 0 0 chr1 5228187 5228214 -276965450 + (TTTAG)n Simple_repeat Simple_repeat 4 30 0 2190 122 0 0 chr1 5228215 5228503 -276965161 - AluSx SINE Alu -24 288 1 1748 190 19 13 chr1 5228503 5228541 -276965123 + L1MB7 LINE L1 6113 6159 -25 534 307 60 40 chr1 5228655 5229052 -276964612 + L1ME3 LINE L1 5462 5881 -289 2051 134 0 7 chr1 5229133 5229432 -276964232 + AluSx SINE Alu 1 297 -15 241 252 32 89 chr1 5229521 5229644 -276964020 + L1ME3 LINE L1 5969 6084 -78 1964 170 0 0 chr1 5229721 5230009 -276963655 + AluJb SINE Alu 5 292 -20 268 336 51 4 chr1 5230093 5230328 -276963336 + L1M4 LINE L1 4568 4813 -1333 336 281 119 19 chr1 5230400 5230560 -276963104 + L1M4 LINE L1 4937 5112 -1034 3085 157 51 4 chr1 5230638 5231186 -276962478 - MER7C DNA MER2_type -15 587 14 817 98 15 23 chr1 5231761 5231893 -276961771 + MLT1B LTR MaLR 251 381 -9 774 121 21 3 chr1 5232023 5232252 -276961412 + (TCTA)n Simple_repeat Simple_repeat 1 232 0 305 355 24 30 chr1 5232341 5232507 -276961157 + L2 LINE L2 2408 2572 -742 230 51 51 0 chr1 5232771 5232810 -276960854 + (CAGA)n Simple_repeat Simple_repeat 4 44 0 604 136 56 16 chr1 5232838 5233331 -276960333 + (CAGAGA)n Simple_repeat Simple_repeat 1 512 0 287 244 13 13 chr1 5233397 5233475 -276960189 + MLT1K LTR MaLR 484 561 -27 180 135 0 0 chr1 5235259 5235296 -276958368 + (TTTTG)n Simple_repeat Simple_repeat 3 39 0 2782 82 3 0 chr1 5240483 5240837 -276952827 - THE1A LTR MaLR 0 355 1 242 272 49 12 chr1 5240884 5240965 -276952699 - L2 LINE L2 -16 3256 3173 360 267 34 27 chr1 5241177 5241323 -276952341 + L2 LINE L2 2205 2351 -963 192 263 42 76 chr1 5241503 5241621 -276952043 + L2 LINE L2 2940 3053 -219 2493 42 0 6 chr1 5243725 5244038 -276949626 + AluY SINE Alu 1 311 0 498 221 47 47 chr1 5244403 5244552 -276949112 - MIR SINE MIR -69 193 45 1557 211 65 51 chr1 5244611 5245123 -276948541 + Charlie1b DNA MER1_type 3 521 -2 5405 123 49 8 chr1 5245269 5246128 -276947536 - L1PA16 LINE L1 0 6166 5273 241 259 37 25 chr1 5246652 5246733 -276946931 - MIR3 SINE MIR -23 185 104 259 290 167 58 chr1 5247392 5247740 -276945924 - L2 LINE L2 0 3272 2887 246 276 0 0 chr1 5248977 5249035 -276944629 + (CAT)n Simple_repeat Simple_repeat 2 59 0 759 278 77 78 chr1 5250139 5250474 -276943190 - MLT1G LTR MaLR -2 588 253 2013 130 3 0 chr1 5250474 5250773 -276942891 - AluSx SINE Alu -3 309 10 759 278 77 78 chr1 5250773 5251012 -276942652 - MLT1G LTR MaLR -337 253 15 214 209 23 0 chr1 5251088 5251131 -276942533 + L2 LINE L2 3210 3253 -19 1788 127 25 38 chr1 5251336 5251652 -276942012 - AluSx SINE Alu 0 312 1 1927 116 3 10 chr1 5251654 5251946 -276941718 - AluJo SINE Alu -22 290 1 2290 78 7 7 chr1 5252791 5253097 -276940567 + AluSq SINE Alu 1 306 -7 1793 156 85 16 chr1 5253738 5254103 -276939561 - MLT1B LTR MaLR 0 390 1 193 219 0 0 chr1 5254717 5254758 -276938906 + L2 LINE L2 2718 2758 -556 878 215 0 6 chr1 5255444 5255602 -276938062 + MIR SINE MIR 21 177 -85 274 133 33 67 chr1 5255674 5255734 -276937930 + MER110A LTR ERV1 81 138 -330 2138 159 30 30 chr1 5255848 5256212 -276937452 + THE1B LTR MaLR 1 364 0 771 263 117 4 chr1 5256226 5256500 -276937164 + MER110 LTR ERV1 173 477 -14 191 36 36 0 chr1 5257793 5257821 -276935843 + (TTTTC)n Simple_repeat Simple_repeat 2 30 0 845 222 23 54 chr1 5258626 5258847 -276934817 + MER20 DNA MER1_type 6 219 0 215 320 104 50 chr1 5259641 5259863 -276933801 + MIR SINE MIR 13 246 -16 544 158 30 139 chr1 5259939 5260104 -276933560 + MER103 DNA DNA 8 154 -12 662 308 182 12 chr1 5260105 5260745 -276932919 - L2 LINE L2 -4 3309 2556 1227 243 97 26 chr1 5260806 5261592 -276932072 - L1ME3A LINE L1 -29 6936 6055 326 220 207 21 chr1 5261572 5261775 -276931889 - L1MCc LINE L1 -4887 1536 1341 * 2050 116 24 0 chr1 5262347 5262641 -276931023 - AluSq SINE Alu -12 301 1 904 244 116 0 chr1 5262918 5263193 -276930471 - L2 LINE L2 -773 2541 2235 440 292 87 0 chr1 5263219 5263380 -276930284 - L2 LINE L2 -1034 2280 2106 388 234 19 0 chr1 5263463 5263570 -276930094 - L2 LINE L2 -1201 2113 2005 641 323 32 18 chr1 5263634 5263919 -276929745 - L2 LINE L2 -1174 2140 1852 2445 66 0 0 chr1 5264295 5264599 -276929065 - AluY SINE Alu -7 304 1 20469 111 11 14 chr1 5265190 5269152 -276924512 - L1PA8A LINE L1 0 6131 2183 2163 114 7 0 chr1 5269459 5269765 -276923899 - AluSc SINE Alu -1 308 1 257 277 53 11 chr1 5269826 5269920 -276923744 - HERVL LTR ERVL -4358 1296 1199 419 276 147 73 chr1 5270628 5270983 -276922681 - LTR67 LTR ERVL -175 382 2 26 64 0 0 chr1 5271028 5271075 -276922589 + AT_rich Low_complexity Low_complexity 1 47 0 279 0 0 0 chr1 5271386 5271417 -276922247 + (TC)n Simple_repeat Simple_repeat 1 31 0 186 309 154 40 chr1 5271779 5271928 -276921736 - L2 LINE L2 -591 2723 2558 1429 173 46 140 chr1 5272137 5272182 -276921482 - MLT2D LTR ERVL -1 413 365 306 0 0 0 chr1 5272182 5272216 -276921448 + (TA)n Simple_repeat Simple_repeat 2 35 0 1429 173 46 140 chr1 5272216 5272626 -276921038 - MLT2D LTR ERVL -49 365 1 207 0 0 0 chr1 5272757 5272780 -276920884 + (TC)n Simple_repeat Simple_repeat 1 23 0 204 311 62 62 chr1 5272868 5273029 -276920635 + L3 LINE CR1 1410 1570 -7 4206 78 40 52 chr1 5275911 5276528 -276917136 - LTR66 LTR ERVL 0 610 1 4004 97 7 3 chr1 5276528 5277202 -276916462 - HERVL66 LTR ERVL 0 4329 3569 * 4876 123 6 20 chr1 5277189 5277903 -276915761 - HERVL66 LTR ERVL -972 3357 2654 2852 75 6 0 chr1 5277883 5278243 -276915421 - HERVL66 LTR ERVL -2532 1797 1436 * 8302 98 16 11 chr1 5278243 5278482 -276915182 - HERVL66 LTR ERVL -3199 1130 894 2435 58 6 10 chr1 5278482 5278794 -276914870 - AluY SINE Alu 0 311 1 8302 98 16 11 chr1 5278794 5279678 -276913986 - HERVL66 LTR ERVL -3435 894 1 4429 55 62 5 chr1 5279678 5280255 -276913409 - LTR66 LTR ERVL 0 610 1 384 271 102 83 chr1 5281064 5281437 -276912227 + L2 LINE L2 2933 3312 -1 588 203 117 37 chr1 5282126 5282289 -276911375 - MLT1D LTR MaLR -329 176 1 30 0 0 0 chr1 5283270 5283300 -276910364 + AT_rich Low_complexity Low_complexity 1 30 0 214 310 0 0 chr1 5283482 5283540 -276910124 + L2 LINE L2 3239 3296 -17 297 282 109 0 chr1 5283912 5284022 -276909642 - L2 LINE L2 -4 3309 3188 5626 68 8 0 chr1 5285847 5286564 -276907100 + L1PA8 LINE L1 5444 6166 -6 35 24 0 0 chr1 5286603 5286645 -276907019 + AT_rich Low_complexity Low_complexity 1 42 0 2534 45 0 3 chr1 5287506 5287814 -276905850 + AluY SINE Alu 1 307 -4 220 239 171 11 chr1 5289213 5289301 -276904363 - MIR SINE MIR -130 132 31 4057 163 85 11 chr1 5291774 5292512 -276901152 - MER54B LTR ERVL 0 793 1 1246 313 115 34 chr1 5293867 5294762 -276898902 + L2 LINE L2 1854 2821 -493 1481 214 54 0 chr1 5294899 5295231 -276898433 - MLT1B LTR MaLR -4 386 37 1920 128 0 21 chr1 5295383 5295708 -276897956 - AluSq SINE Alu 0 319 1 1262 237 121 71 chr1 5296299 5296780 -276896884 - MLT1D LTR MaLR 0 505 1 188 303 84 58 chr1 5297762 5297917 -276895747 + MIR3 SINE MIR 4 162 -46 327 317 122 10 chr1 5297917 5298122 -276895542 + MIR SINE MIR 20 247 -15 241 336 0 44 chr1 5298694 5298807 -276894857 - MLT1K LTR MaLR 0 588 481 1089 261 37 35 chr1 5298844 5299184 -276894480 - MLT1C LTR MaLR -3 464 121 1498 179 17 21 chr1 5299184 5299475 -276894189 - AluJo SINE Alu -22 290 1 1089 261 37 35 chr1 5299475 5299509 -276894155 - MLT1C LTR MaLR -346 121 89 263 279 0 0 chr1 5300563 5300631 -276893033 + C-rich Low_complexity Low_complexity 1 68 0 192 217 17 40 chr1 5305113 5305198 -276888466 - MIR SINE MIR -122 86 34 713 259 80 5 chr1 5306284 5306496 -276887168 + L1ME2 LINE L1 5937 6164 0 196 51 26 26 chr1 5306626 5306665 -276886999 + (TTTTTA)n Simple_repeat Simple_repeat 2 40 0 744 50 0 0 chr1 5306672 5306772 -276886892 - L1PA5 LINE L1 -112 6042 5943 354 226 18 113 chr1 5306827 5306995 -276886669 - L1MCa LINE L1 -4348 2078 1927 2154 108 0 3 chr1 5307033 5307338 -276886326 - AluSq SINE Alu -9 304 1 309 274 55 48 chr1 5307366 5307512 -276886152 + L1MCa LINE L1 1933 2079 -4347 1692 213 75 59 chr1 5307664 5308245 -276885419 + MER114 LTR ERV 2 595 -53 1623 184 37 0 chr1 5308245 5308539 -276885125 + AluJb SINE Alu 1 305 -7 1692 213 75 59 chr1 5308539 5308581 -276885083 + MER114 LTR ERV 595 635 -13 1926 138 0 0 chr1 5308767 5309095 -276884569 + AluSq SINE Alu 1 328 0 2385 75 0 3 chr1 5309377 5309682 -276883982 - AluSq SINE Alu -9 304 1 1847 129 0 7 chr1 5309759 5310038 -276883626 - AluSx SINE Alu -15 297 21 540 302 123 19 chr1 5312221 5312529 -276881135 - MLT1J2 LTR MaLR -40 410 71 1906 181 101 15 chr1 5312668 5313066 -276880598 - MER70A LTR ERVL 0 472 41 316 319 9 26 chr1 5313249 5313365 -276880299 - MIR SINE MIR -136 126 13 209 300 134 69 chr1 5314178 5314455 -276879209 - L2 LINE L2 0 3272 2978 356 287 43 24 chr1 5314752 5314916 -276878748 - MER63A DNA MER1_type -2 208 42 266 219 98 12 chr1 5316200 5316212 -276877452 + MER53 DNA DNA 1 19 -170 265 218 81 11 chr1 5316212 5316299 -276877365 - MER53 DNA DNA -3 186 94 279 180 0 16 chr1 5316549 5316610 -276877054 + MER53 DNA DNA 128 187 -2 202 218 55 0 chr1 5316615 5316670 -276876994 + MIR SINE MIR 88 145 -63 903 223 130 31 chr1 5317340 5317826 -276875838 + MLT1E1 LTR MaLR 1 648 -6 225 0 0 0 chr1 5317981 5318006 -276875658 + (TTCA)n Simple_repeat Simple_repeat 3 27 0 777 291 57 10 chr1 5319268 5319564 -276874100 - MER77 LTR ERV1 -4 601 292 1659 201 93 50 chr1 5320189 5320672 -276872992 - MLT1D LTR MaLR -1 504 1 184 354 41 34 chr1 5320710 5320857 -276872807 + L2 LINE L2 3100 3247 -25 343 136 60 87 chr1 5320884 5321068 -276872596 + (CACAG)n Simple_repeat Simple_repeat 1 179 0 407 5 0 135 chr1 5321127 5321312 -276872352 + (CA)n Simple_repeat Simple_repeat 1 160 0 328 145 51 96 chr1 5321336 5321709 -276871955 + (CACAG)n Simple_repeat Simple_repeat 1 356 0 1617 213 116 16 chr1 5322048 5322489 -276871175 - MER31A LTR ERV1 0 485 1 1956 127 38 0 chr1 5323962 5324253 -276869411 - AluSx SINE Alu -3 309 8 223 291 0 0 chr1 5324492 5324547 -276869117 + (CCCA)n Simple_repeat Simple_repeat 1 55 0 261 242 0 16 chr1 5324822 5324884 -276868780 + GA-rich Low_complexity Low_complexity 1 61 0 733 302 41 16 chr1 5325306 5325548 -276868116 - MIR SINE MIR -13 249 2 189 0 0 0 chr1 5325766 5325787 -276867877 + (T)n Simple_repeat Simple_repeat 1 21 0 1820 125 29 11 chr1 5327415 5327577 -276866087 - AluSx SINE Alu 0 303 132 2007 92 32 35 chr1 5327577 5327891 -276865773 - AluSq SINE Alu 0 313 1 1820 125 29 11 chr1 5327891 5328021 -276865643 - AluSx SINE Alu -171 132 6 1777 163 13 0 chr1 5328062 5328368 -276865296 - AluJb SINE Alu -2 310 1 319 302 0 8 chr1 5328625 5328754 -276864910 - L1M LINE L1 -747 5415 5288 191 180 60 0 chr1 5328775 5328825 -276864839 + (CATATA)n Simple_repeat Simple_repeat 2 54 0 429 260 57 0 chr1 5328825 5329002 -276864662 - L1M4 LINE L1 -874 5272 5086 198 71 0 0 chr1 5329058 5329086 -276864578 + (TGAA)n Simple_repeat Simple_repeat 1 28 0 184 340 0 0 chr1 5329322 5329372 -276864292 + MIR SINE MIR 141 190 -72 224 59 29 0 chr1 5329435 5329469 -276864195 + (CAT)n Simple_repeat Simple_repeat 1 35 0 22 0 0 0 chr1 5329599 5329621 -276864043 + AT_rich Low_complexity Low_complexity 1 22 0 1159 208 16 43 chr1 5329681 5330003 -276863661 - Charlie1 DNA MER1_type -303 2458 2146 1015 206 45 96 chr1 5330004 5330358 -276863306 - L1MB7 LINE L1 -2 6182 5847 274 211 0 0 chr1 5330421 5330478 -276863186 - Charlie1 DNA MER1_type -298 2463 2407 693 227 71 15 chr1 5330478 5330676 -276862988 - L1MB7 LINE L1 -322 5862 5654 1459 218 40 37 chr1 5330772 5331152 -276862512 + MLT1B LTR MaLR 1 381 -9 322 338 10 2 chr1 5332378 5332487 -276861177 - MIR SINE MIR -59 149 53 215 102 0 41 chr1 5332505 5332554 -276861110 + (CAAAAA)n Simple_repeat Simple_repeat 1 47 0 2092 110 7 0 chr1 5333412 5333704 -276859960 - AluSx SINE Alu -18 294 1 682 303 14 91 chr1 5333828 5334347 -276859317 - MLT1J LTR MaLR -8 503 25 227 329 0 0 chr1 5334924 5334994 -276858670 + MIR SINE MIR 141 210 -52 972 182 0 3 chr1 5335385 5336097 -276857567 + (TGG)n Simple_repeat Simple_repeat 1 709 0 1302 156 0 0 chr1 5336134 5336358 -276857306 - L1MA4 LINE L1 -5 6295 6072 907 268 36 13 chr1 5336783 5337085 -276856579 + MLT1I LTR MaLR 98 406 -3 225 196 0 0 chr1 5339701 5339747 -276853917 + (TG)n Simple_repeat Simple_repeat 2 47 0 1974 122 0 14 chr1 5339938 5340261 -276853403 + AluSx SINE Alu 1 319 0 1165 253 82 5 chr1 5340538 5340965 -276852699 + Charlie4a DNA MER1_type 25 484 -24 259 308 28 9 chr1 5341378 5341485 -276852179 - MIR SINE MIR -118 144 36 245 241 25 51 chr1 5342862 5343020 -276850644 + G-rich Low_complexity Low_complexity 3 156 0 31 88 0 0 chr1 5343031 5343111 -276850553 + GC_rich Low_complexity Low_complexity 1 80 0 27 49 0 0 chr1 5343480 5343521 -276850143 + GC_rich Low_complexity Low_complexity 1 41 0 23 68 0 0 chr1 5343568 5343612 -276850052 + GC_rich Low_complexity Low_complexity 1 44 0 28 29 0 0 chr1 5343625 5343660 -276850004 + GC_rich Low_complexity Low_complexity 1 35 0 49 66 0 0 chr1 5344108 5344199 -276849465 + GC_rich Low_complexity Low_complexity 1 91 0 22 0 0 0 chr1 5344465 5344487 -276849177 + GC_rich Low_complexity Low_complexity 1 22 0 198 0 0 0 chr1 5346053 5346075 -276847589 + (TGGGGG)n Simple_repeat Simple_repeat 2 23 0 1371 176 30 62 chr1 5348015 5348065 -276845599 + L1MD1 LINE L1 5885 5935 -307 2541 168 8 70 chr1 5348065 5348583 -276845081 + MER66B LTR ERV1 1 486 0 1371 176 30 62 chr1 5348583 5348902 -276844762 + L1MD1 LINE L1 5935 6242 0 734 257 39 6 chr1 5349723 5349902 -276843762 - MIR SINE MIR -70 192 8 24 0 0 0 chr1 5350232 5350256 -276843408 + AT_rich Low_complexity Low_complexity 1 24 0 273 29 0 0 chr1 5350388 5350422 -276843242 + (TG)n Simple_repeat Simple_repeat 1 34 0 1034 311 50 10 chr1 5350426 5350924 -276842740 - L1MB7 LINE L1 -16 6168 5651 793 194 0 0 chr1 5351486 5351620 -276842044 - AluJo SINE Alu -178 134 1 695 254 100 12 chr1 5352329 5352569 -276841095 - MIR SINE MIR -1 261 1 183 358 154 0 chr1 5354075 5354198 -276839466 - L2 LINE L2 -5 3308 3167 2201 134 24 0 chr1 5355743 5356071 -276837593 - MER1B DNA MER1_type 0 337 2 1999 134 3 0 chr1 5356274 5356566 -276837098 + AluSx SINE Alu 1 293 -19 372 88 0 0 chr1 5356664 5356721 -276836943 + (TG)n Simple_repeat Simple_repeat 2 58 0 403 270 56 27 chr1 5356804 5356962 -276836702 - MIR SINE MIR -35 173 51 2377 206 34 9 chr1 5357390 5357640 -276836024 - L1MB5 LINE L1 -1 6173 5931 2166 107 55 30 chr1 5357640 5358003 -276835661 - THE1C LTR MaLR -3 372 1 2377 206 34 9 chr1 5358003 5358276 -276835388 - L1MB5 LINE L1 -243 5931 5637 340 250 103 17 chr1 5358290 5358406 -276835258 + MIR SINE MIR 22 147 -115 2175 116 0 0 chr1 5359428 5359729 -276833935 + AluSx SINE Alu 1 301 -11 1007 220 31 101 chr1 5361103 5361625 -276832039 + MLT1E2 LTR MaLR 61 626 0 239 321 0 12 chr1 5361684 5361768 -276831896 + CT-rich Low_complexity Low_complexity 2 84 0 453 179 50 184 chr1 5362264 5362482 -276831182 + MER53 DNA DNA 1 189 0 245 95 0 24 chr1 5362619 5362661 -276831003 + MER58A DNA MER1_type 42 82 -25 538 216 196 0 chr1 5362711 5362864 -276830800 + MER58A DNA MER1_type 42 224 0 1645 268 47 21 chr1 5363541 5364075 -276829589 - MER77 LTR ERV1 -4 601 54 2268 90 0 3 chr1 5365217 5365516 -276828148 + AluSx SINE Alu 1 298 -14 946 200 73 5 chr1 5366673 5366893 -276826771 - MLT1E LTR MaLR -54 539 305 761 219 78 10 chr1 5366933 5367138 -276826526 - MLT1E LTR MaLR -373 220 2 422 267 80 40 chr1 5367169 5367345 -276826319 - MIR SINE MIR 0 262 80 462 340 82 22 chr1 5367488 5367720 -276825944 + L2 LINE L2 3054 3299 -14 189 0 0 0 chr1 5367724 5367745 -276825919 + (TGAA)n Simple_repeat Simple_repeat 4 24 0 1741 186 76 14 chr1 5367814 5368111 -276825553 - MLT1C LTR MaLR 0 467 133 2054 215 50 45 chr1 5368111 5368151 -276825513 - MLT2B1 LTR ERVL 0 520 482 396 0 0 0 chr1 5368151 5368195 -276825469 + (TG)n Simple_repeat Simple_repeat 2 45 0 2054 215 50 45 chr1 5368195 5368671 -276824993 - MLT2B1 LTR ERVL -38 482 1 1741 186 76 14 chr1 5368671 5368808 -276824856 - MLT1C LTR MaLR -334 133 6 290 277 125 23 chr1 5370099 5370228 -276823436 + MIR SINE MIR 17 157 -56 505 246 127 0 chr1 5370285 5370427 -276823237 - MIR SINE MIR -75 187 28 294 194 0 0 chr1 5371010 5371077 -276822587 + (ATG)n Simple_repeat Simple_repeat 2 68 0 750 198 0 0 chr1 5371097 5371274 -276822390 + (ATG)n Simple_repeat Simple_repeat 3 179 0 533 333 53 0 chr1 5371430 5371619 -276822045 + MIR SINE MIR 36 234 -28 621 231 34 8 chr1 5371642 5371826 -276821838 - MER5A DNA MER1_type -7 171 1 215 243 0 43 chr1 5372315 5372385 -276821279 + GA-rich Low_complexity Low_complexity 1 67 0 197 309 161 0 chr1 5373030 5373111 -276820553 - MIR SINE MIR -119 143 50 487 221 26 19 chr1 5374553 5374693 -276818971 - MLT1B LTR MaLR 0 467 358 191 310 127 28 chr1 5374722 5374870 -276818794 + MIR SINE MIR 33 144 -64 273 119 0 0 chr1 5376134 5376176 -276817488 + (TTCA)n Simple_repeat Simple_repeat 1 42 0 2385 88 3 0 chr1 5376833 5377140 -276816524 + AluSx SINE Alu 1 308 -4 232 279 139 0 chr1 5377195 5377274 -276816390 - MIR SINE MIR -62 200 111 293 303 151 7 chr1 5378924 5379076 -276814588 - MIR SINE MIR -8 254 81 207 205 0 0 chr1 5380503 5380542 -276813122 - MIR SINE MIR -113 149 111 312 326 137 0 chr1 5380973 5381148 -276812516 + L2 LINE L2 2967 3165 -107 1211 241 90 6 chr1 5381952 5382317 -276811347 - MSTD LTR MaLR 0 396 1 285 312 24 16 chr1 5382761 5382886 -276810778 - L2 LINE L2 0 3272 3147 474 189 41 0 chr1 5383366 5383488 -276810176 + MER20 DNA MER1_type 5 131 -88 1546 174 87 3 chr1 5383884 5384229 -276809435 - MLT1B LTR MaLR -16 374 1 402 300 16 6 chr1 5385016 5385434 -276808230 + (TG)n Simple_repeat Simple_repeat 1 422 0 281 294 22 22 chr1 5385474 5385610 -276808054 + (TG)n Simple_repeat Simple_repeat 1 136 0 357 304 62 46 chr1 5385612 5385806 -276807858 + L3 LINE CR1 1274 1470 -107 255 385 15 0 chr1 5385936 5386071 -276807593 + MIR SINE MIR 36 172 -90 195 286 50 67 chr1 5386882 5387001 -276806663 - L3 LINE CR1 -5 1572 1456 356 356 34 7 chr1 5388132 5388281 -276805383 + MIR SINE MIR 110 262 0 342 269 76 70 chr1 5388646 5388817 -276804847 - MER5B DNA MER1_type -5 173 2 227 373 25 25 chr1 5389644 5389762 -276803902 - MIR SINE MIR -70 138 21 718 174 71 0 chr1 5389912 5390067 -276803597 - MER20 DNA MER1_type -48 171 6 7706 30 0 0 chr1 5392500 5393518 -276800146 - L1PA3 LINE L1 -1 6154 5136 1539 15 0 0 chr1 5393518 5393719 -276799945 + L1PA3 LINE L1 4930 5130 -1016 306 0 0 0 chr1 5393738 5393772 -276799892 + (T)n Simple_repeat Simple_repeat 1 34 0 1470 279 74 19 chr1 5393783 5394403 -276799261 + L1MC3 LINE L1 7129 7782 -3 1881 271 78 13 chr1 5395620 5396298 -276797366 - L1MB7 LINE L1 -18 6166 5445 2348 83 0 0 chr1 5396306 5396608 -276797056 - AluSc SINE Alu -7 302 1 343 314 6 6 chr1 5397613 5397785 -276795879 + (GTGTG)n Simple_repeat Simple_repeat 5 176 0 320 262 6 16 chr1 5398380 5398701 -276794963 + (CA)n Simple_repeat Simple_repeat 1 318 0 361 308 0 7 chr1 5398736 5398879 -276794785 + (CA)n Simple_repeat Simple_repeat 1 142 0 22 35 0 0 chr1 5400371 5400400 -276793264 + GC_rich Low_complexity Low_complexity 1 29 0 216 111 0 0 chr1 5400862 5400898 -276792766 + (CCA)n Simple_repeat Simple_repeat 1 36 0 206 331 48 28 chr1 5401473 5401618 -276792046 + L3b LINE CR1 1244 1391 -192 265 395 8 8 chr1 5403239 5403363 -276790301 + L3b LINE CR1 1328 1451 -132 363 366 45 18 chr1 5403625 5403746 -276789918 + MIR SINE MIR 33 164 -98 2071 118 10 3 chr1 5403746 5404042 -276789622 + AluSp SINE Alu 1 298 -15 363 366 45 18 chr1 5404042 5404144 -276789520 + MIR SINE MIR 164 262 0 495 325 123 5 chr1 5404618 5404821 -276788843 + MIR SINE MIR 36 262 0 897 168 0 0 chr1 5404834 5405013 -276788651 + (ATG)n Simple_repeat Simple_repeat 1 179 0 509 185 8 0 chr1 5405025 5405144 -276788520 + (ATG)n Simple_repeat Simple_repeat 1 120 0 2269 105 7 0 chr1 5406819 5407123 -276786541 - AluSc SINE Alu -3 306 1 232 326 33 22 chr1 5407960 5408052 -276785612 + MIR3 SINE MIR 95 187 -21 191 406 41 16 chr1 5408849 5408972 -276784692 + MIR SINE MIR 78 203 -59 210 193 53 18 chr1 5409542 5409599 -276784065 - MIR SINE MIR -130 78 20 558 314 73 55 chr1 5410082 5410588 -276783076 - MER20B DNA MER1_type -7 776 262 623 255 176 5 chr1 5410858 5411159 -276782505 - MLT1C LTR MaLR -10 495 129 185 297 187 65 chr1 5411450 5412267 -276781397 - L2 LINE L2 -823 2491 1575 1805 192 41 0 chr1 5413971 5414345 -276779319 - MLT1B LTR MaLR 0 467 1 296 258 65 21 chr1 5414969 5415062 -276778602 - MER5A DNA MER1_type -29 160 64 260 225 75 83 chr1 5414972 5415092 -276778572 + MER5A DNA MER1_type 44 162 -27 * 687 241 162 98 chr1 5415950 5416493 -276777171 + MLT1E LTR MaLR 11 588 -5 1200 211 60 3 chr1 5417856 5418154 -276775510 - MLT1B LTR MaLR -71 319 5 396 223 86 22 chr1 5418163 5418302 -276775362 - MLT1C LTR MaLR -313 154 7 23 0 0 0 chr1 5419377 5419400 -276774264 + AT_rich Low_complexity Low_complexity 1 23 0 2342 106 0 0 chr1 5419411 5419723 -276773941 - AluSx SINE Alu 0 312 1 288 314 74 16 chr1 5421778 5421899 -276771765 - L2 LINE L2 0 3272 3145 472 269 66 28 chr1 5422642 5422824 -276770840 - MIR SINE MIR -27 235 47 555 271 90 6 chr1 5424328 5424505 -276769159 + MIR SINE MIR 60 251 -11 243 338 14 50 chr1 5424931 5425070 -276768594 + L2 LINE L2 3180 3313 0 1778 156 3 29 chr1 5425954 5426269 -276767395 + AluJo SINE Alu 1 307 -5 315 363 131 2 chr1 5426799 5427210 -276766454 - L2 LINE L2 -340 2974 2511 217 200 0 33 chr1 5428048 5428108 -276765556 + T-rich Low_complexity Low_complexity 2 59 0 2834 186 16 27 chr1 5428356 5428846 -276764818 + L1MB3 LINE L1 5640 6125 -58 2483 46 0 3 chr1 5428846 5429148 -276764516 + AluY SINE Alu 1 301 -10 2834 186 16 27 chr1 5429148 5429206 -276764458 + L1MB3 LINE L1 6125 6182 -1 886 251 171 6 chr1 5429556 5429907 -276763757 - MLT1C LTR MaLR -6 461 53 2681 233 106 6 chr1 5429946 5430852 -276762812 + L1MC4 LINE L1 6568 7668 -374 222 91 0 0 chr1 5431881 5431914 -276761750 + (TCCA)n Simple_repeat Simple_repeat 2 34 0 312 188 0 0 chr1 5432932 5432996 -276760668 + (CA)n Simple_repeat Simple_repeat 1 64 0 226 328 16 8 chr1 5433036 5433158 -276760506 + (CA)n Simple_repeat Simple_repeat 1 123 0 249 257 28 46 chr1 5434215 5434324 -276759340 + MIR SINE MIR 46 152 -110 1260 241 55 40 chr1 5434332 5434785 -276758879 - MLT1C LTR MaLR -1 466 7 185 369 131 6 chr1 5435859 5436035 -276757629 + L2 LINE L2 1046 1243 -2071 2081 116 7 13 chr1 5436050 5436360 -276757304 + AluSx SINE Alu 1 308 -4 2322 106 0 0 chr1 5436808 5437120 -276756544 + AluSx SINE Alu 1 312 0 743 245 38 52 chr1 5437120 5437332 -276756332 + MLT1A1 LTR MaLR 126 334 -31 198 353 43 9 chr1 5437600 5437716 -276755948 + MIR SINE MIR 27 146 -62 278 344 0 6 chr1 5438087 5438244 -276755420 + (TG)n Simple_repeat Simple_repeat 2 157 0 297 222 0 0 chr1 5438297 5438396 -276755268 + (TG)n Simple_repeat Simple_repeat 2 100 0 258 250 0 0 chr1 5438507 5438595 -276755069 + (TG)n Simple_repeat Simple_repeat 1 88 0 257 291 111 34 chr1 5439834 5439951 -276753713 - L2 LINE L2 0 3272 3147 358 194 10 10 chr1 5440476 5440574 -276753090 + GA-rich Low_complexity Low_complexity 3 100 0 189 247 54 86 chr1 5441656 5441749 -276751915 - MIR3 SINE MIR -48 160 71 24 77 0 0 chr1 5441783 5441835 -276751829 + AT_rich Low_complexity Low_complexity 1 52 0 257 289 43 68 chr1 5441856 5441916 -276751748 - L1MCc LINE L1 -4914 1509 1449 2240 94 3 0 chr1 5441916 5442214 -276751450 - AluSp SINE Alu -14 299 1 257 289 43 68 chr1 5442214 5442388 -276751276 - L1MCc LINE L1 -4974 1449 1281 1264 261 59 0 chr1 5442406 5442728 -276750936 + MER58B DNA MER1_type 1 341 0 2501 153 10 72 chr1 5443960 5444477 -276749187 - MER31A LTR ERV1 0 485 1 295 200 158 42 chr1 5445036 5445131 -276748533 + MER103 DNA DNA 17 122 -44 280 280 8 51 chr1 5445670 5445788 -276747876 - MLT1H LTR MaLR -196 353 241 382 282 13 39 chr1 5446005 5446161 -276747503 + L2 LINE L2 3161 3312 -1 2398 135 13 21 chr1 5446196 5446574 -276747090 + THE1C LTR MaLR 1 375 0 2366 99 24 44 chr1 5446662 5447045 -276746619 - THE1C LTR MaLR 0 375 1 654 211 0 0 chr1 5448536 5448716 -276744948 + (TG)n Simple_repeat Simple_repeat 1 180 0 253 224 75 0 chr1 5449244 5449311 -276744353 - MER58A DNA MER1_type 0 224 153 3378 96 7 20 chr1 5449907 5450366 -276743298 - MLT2A2 LTR ERVL 0 453 1 836 91 0 0 chr1 5450366 5450487 -276743177 - HERVL-A2 LTR ERVL 0 5654 5534 1629 236 102 18 chr1 5450641 5451094 -276742570 + MER77 LTR ERV1 108 598 -7 270 273 231 0 chr1 5451102 5451223 -276742441 + MIR SINE MIR 81 229 -33 490 236 28 21 chr1 5451445 5451589 -276742075 - MER20 DNA MER1_type -48 171 27 1313 188 4 4 chr1 5451819 5452053 -276741611 + MLT2B2 LTR ERVL 1 234 -281 514 199 11 28 chr1 5452064 5452240 -276741424 + CT-rich Low_complexity Low_complexity 1 173 0 1129 199 19 25 chr1 5452251 5452566 -276741098 + MLT2B2 LTR ERVL 247 515 0 1080 211 9 5 chr1 5454451 5454664 -276739000 + MER58A DNA MER1_type 7 220 -4 749 206 9 0 chr1 5455549 5455891 -276737773 + (CAT)n Simple_repeat Simple_repeat 1 345 0 941 163 6 0 chr1 5455903 5456081 -276737583 + (CAT)n Simple_repeat Simple_repeat 1 179 0 26 50 0 0 chr1 5460407 5460447 -276733217 + AT_rich Low_complexity Low_complexity 1 40 0 274 211 3 0 chr1 5464547 5464613 -276729051 - MIR SINE MIR -55 153 86 369 226 38 19 chr1 5464701 5464807 -276728857 - MIR SINE MIR -122 140 33 218 104 0 21 chr1 5466361 5466409 -276727255 + (TTTA)n Simple_repeat Simple_repeat 2 48 0 566 51 13 0 chr1 5466914 5466992 -276726672 + (TC)n Simple_repeat Simple_repeat 2 80 0 771 77 0 0 chr1 5467666 5467770 -276725894 - AluY SINE Alu 0 311 208 227 254 8 108 chr1 5467965 5468095 -276725569 + MER94 DNA DNA 4 120 -14 950 226 39 42 chr1 5468161 5468205 -276725459 - L1MB3 LINE L1 -3 6180 6137 2196 81 44 0 chr1 5468205 5468500 -276725164 + AluSx SINE Alu 1 308 -4 950 226 39 42 chr1 5468500 5468738 -276724926 - L1MB3 LINE L1 -46 6137 5899 1449 128 22 0 chr1 5468962 5469189 -276724475 - AluSg/x SINE Alu 0 312 81 285 323 31 23 chr1 5469653 5469783 -276723881 + MER5A DNA MER1_type 18 148 -41 * 361 273 45 30 chr1 5469680 5469812 -276723852 - MER5A DNA MER1_type -32 157 24 241 26 53 0 chr1 5470908 5470946 -276722718 + (CAAAA)n Simple_repeat Simple_repeat 2 41 0 213 214 0 0 chr1 5471352 5471394 -276722270 + (CATA)n Simple_repeat Simple_repeat 4 45 0 217 246 15 31 chr1 5471539 5471604 -276722060 + (CA)n Simple_repeat Simple_repeat 1 64 0 469 223 46 9 chr1 5471780 5471891 -276721773 + L1MC4 LINE L1 1978 6985 -1337 392 322 0 0 chr1 5471817 5471907 -276721757 - L1MC4 LINE L1 -1339 6703 6614 * 305 294 88 10 chr1 5471898 5472000 -276721664 + L1MC4 LINE L1 6939 7048 -1274 * 192 315 91 55 chr1 5475453 5475672 -276717992 - L2 LINE L2 -2 3270 3044 200 276 0 17 chr1 5475672 5475730 -276717934 + GA-rich Low_complexity Low_complexity 6 62 0 261 0 0 0 chr1 5478130 5478159 -276715505 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 360 0 0 0 chr1 5479259 5479299 -276714365 + (TTTTTG)n Simple_repeat Simple_repeat 3 42 0 204 184 0 0 chr1 5480843 5480892 -276712772 + A-rich Low_complexity Low_complexity 1 49 0 874 191 91 0 chr1 5481485 5481684 -276711980 + MER20 DNA MER1_type 1 217 -2 1623 174 7 3 chr1 5482181 5482474 -276711190 - AluJo SINE Alu -18 294 1 699 277 40 0 chr1 5483761 5483963 -276709701 + MER20 DNA MER1_type 1 210 -9 1654 171 62 64 chr1 5484137 5484604 -276709060 - MLT1C LTR MaLR 0 467 2 2334 103 57 14 chr1 5487021 5487370 -276706294 + THE1B LTR MaLR 1 364 0 213 315 14 0 chr1 5487881 5487954 -276705710 + CT-rich Low_complexity Low_complexity 2 75 0 554 307 12 0 chr1 5488207 5488370 -276705294 - MIR SINE MIR -18 244 80 1310 177 89 86 chr1 5490551 5490946 -276702718 + MSTD LTR MaLR 1 396 0 449 244 83 24 chr1 5492455 5492687 -276700977 - MLT1F LTR MaLR -5 537 311 222 348 59 17 chr1 5492718 5492836 -276700828 + MIR SINE MIR 108 230 -32 621 359 113 0 chr1 5492858 5493176 -276700488 + L3 LINE CR1 1221 1574 -3 326 310 32 133 chr1 5493250 5493514 -276700150 - L2 LINE L2 0 3272 3062 2441 168 18 18 chr1 5493514 5493948 -276699716 + Tigger2a DNA MER2_type 1 434 0 326 310 32 133 chr1 5493948 5494089 -276699575 - L2 LINE L2 -210 3062 2908 267 321 148 29 chr1 5494255 5494532 -276699132 - L2 LINE L2 -716 2598 2289 2745 291 76 42 chr1 5494629 5495195 -276698469 + L1ME1 LINE L1 68 613 -5783 1809 168 26 0 chr1 5495195 5495499 -276698165 + AluJo SINE Alu 1 312 0 2745 291 76 42 chr1 5495499 5496623 -276697041 + L1ME1 LINE L1 613 1841 -4555 2698 93 50 24 chr1 5496623 5497040 -276696624 + MSTA LTR MaLR 1 428 0 2745 291 76 42 chr1 5497040 5497392 -276696272 + L1ME1 LINE L1 1841 2180 -4216 1093 183 139 40 chr1 5497410 5497711 -276695953 + L1MC1 LINE L1 58 388 -6038 6154 197 31 5 chr1 5497712 5497831 -276695833 + L1MC1 LINE L1 4405 4519 -2094 231 36 0 0 chr1 5497831 5497859 -276695805 + (CA)n Simple_repeat Simple_repeat 1 28 0 6154 197 31 5 chr1 5497859 5499883 -276693781 + L1MC1 LINE L1 4519 6608 -5 7471 242 77 43 chr1 5499892 5500016 -276693648 + L1ME1 LINE L1 2179 2297 -3938 180 0 0 0 chr1 5500016 5500036 -276693628 + (CAAAA)n Simple_repeat Simple_repeat 2 21 0 721 241 39 15 chr1 5500037 5500240 -276693424 + MER63A DNA MER1_type 2 209 -1 7471 242 77 43 chr1 5500240 5501651 -276692013 + L1ME1 LINE L1 2297 3659 -2576 360 0 0 0 chr1 5501651 5501691 -276691973 + (CA)n Simple_repeat Simple_repeat 2 41 0 7471 242 77 43 chr1 5501691 5504120 -276689544 + L1ME1 LINE L1 3659 6230 -5 1552 171 13 17 chr1 5504125 5504423 -276689241 - AluJo SINE Alu -15 297 1 5360 81 3 1 chr1 5504735 5505416 -276688248 + LTR8 LTR ERV1 1 682 -9 1972 190 54 30 chr1 5505570 5506113 -276687551 + MLT2A2 LTR ERVL 1 554 0 1580 243 133 39 chr1 5506126 5506211 -276687453 + L1ME3 LINE L1 5264 5340 -830 2629 130 36 25 chr1 5506211 5506687 -276686977 - MER31A LTR ERV1 0 485 5 1580 243 133 39 chr1 5506687 5507012 -276686652 + L1ME3 LINE L1 5340 5633 -537 2476 163 74 0 chr1 5507012 5507447 -276686217 - LTR24 LTR ERV1 0 467 1 1580 243 133 39 chr1 5507447 5507665 -276685999 + L1ME3 LINE L1 5633 5962 -208 3554 112 21 41 chr1 5507747 5508328 -276685336 - LTR24B LTR ERV1 -7 569 1 279 306 8 8 chr1 5508354 5508478 -276685186 + L1ME3 LINE L1 6020 6143 -27 541 260 73 113 chr1 5508480 5509045 -276684619 + LTR48B LTR ERV1 1 542 0 203 282 64 26 chr1 5509120 5509198 -276684466 + MER91B DNA MER1_type 1 81 -109 210 326 22 11 chr1 5509496 5509585 -276684079 - MIR SINE MIR -59 149 60 4280 133 18 32 chr1 5510109 5510825 -276682839 + MER50 LTR ERV1 1 706 -28 761 175 7 35 chr1 5511003 5511029 -276682635 - MER4D LTR ERV1 -7 896 871 2394 162 25 23 chr1 5511029 5511462 -276682202 + MER57B LTR ERV1 1 434 0 761 175 7 35 chr1 5511462 5511578 -276682086 - MER4D LTR ERV1 -32 871 758 1328 112 31 40 chr1 5511602 5511826 -276681838 - MER50 LTR ERV1 -306 428 207 241 302 0 0 chr1 5511826 5511912 -276681752 + L1MC4 LINE L1 6618 6703 -1339 207 0 0 0 chr1 5511914 5511937 -276681727 + (CA)n Simple_repeat Simple_repeat 2 24 0 662 122 10 0 chr1 5511958 5512056 -276681608 - AluSg/x SINE Alu -81 231 133 1887 165 3 0 chr1 5512057 5512366 -276681298 - AluSq SINE Alu -3 310 1 4832 127 10 32 chr1 5512367 5513144 -276680520 - MER4D LTR ERV1 -140 763 4 2554 159 29 31 chr1 5513771 5514275 -276679389 + MER41B LTR ERV1 140 478 0 4689 66 5 0 chr1 5515104 5515692 -276677972 + LTR10C LTR ERV1 1 591 0 198 0 0 0 chr1 5515971 5515993 -276677671 + (CA)n Simple_repeat Simple_repeat 2 23 0 302 294 78 39 chr1 5519244 5519397 -276674267 + MIR SINE MIR 70 228 -34 737 247 18 12 chr1 5519672 5519842 -276673822 - MER45A DNA AcHobo 0 178 8 236 240 48 77 chr1 5519911 5520015 -276673649 - MIR SINE MIR -73 189 89 369 270 227 11 chr1 5520160 5520345 -276673319 + MIR SINE MIR 12 236 -26 229 106 21 85 chr1 5520672 5520719 -276672945 + L2 LINE L2 3199 3242 -71 281 118 20 0 chr1 5520721 5520772 -276672892 + MADE1 DNA Mariner 2 53 -27 331 119 119 17 chr1 5520780 5520839 -276672825 + L2 LINE L2 3242 3306 -7 1845 170 5 86 chr1 5521114 5521350 -276672314 - MLT1A1 LTR MaLR -2 363 170 1908 139 7 3 chr1 5521350 5521637 -276672027 - AluSx SINE Alu -24 288 1 1845 170 5 86 chr1 5521637 5521795 -276671869 - MLT1A1 LTR MaLR -195 170 1 2353 134 20 3 chr1 5521894 5522252 -276671412 - THE1B LTR MaLR 0 364 1 1970 177 65 58 chr1 5522444 5522908 -276670756 + MLT1C LTR MaLR 1 467 0 812 275 31 64 chr1 5522912 5523239 -276670425 + MLT1I LTR MaLR 1 316 -93 3379 56 0 77 chr1 5523250 5523290 -276670374 - MLT2A1 LTR ERVL 0 444 403 183 80 0 0 chr1 5523290 5523315 -276670349 + (TA)n Simple_repeat Simple_repeat 1 25 0 3379 56 0 77 chr1 5523315 5523348 -276670316 - MLT2A1 LTR ERVL -41 403 369 252 0 0 0 chr1 5523348 5523376 -276670288 + (TC)n Simple_repeat Simple_repeat 2 29 0 3379 56 0 77 chr1 5523376 5523782 -276669882 - MLT2A1 LTR ERVL -75 369 1 2078 58 11 0 chr1 5523782 5524060 -276669604 - HERVL-A1 LTR ERVL 0 5654 5374 1199 236 45 62 chr1 5525347 5525866 -276667798 + MLT1E3 LTR MaLR 3 601 -23 1404 163 83 18 chr1 5525891 5526167 -276667497 - AluJb SINE Alu -18 294 1 2112 146 42 22 chr1 5527149 5527506 -276666158 - THE1B LTR MaLR 0 364 1 10110 109 82 9 chr1 5527506 5528979 -276664685 - THE1B-int LTR MaLR 0 1580 1 2174 132 36 33 chr1 5528979 5529342 -276664322 - THE1B LTR MaLR 0 364 1 2655 207 100 12 chr1 5529405 5530005 -276663659 + MLT1E1 LTR MaLR 2 654 0 2338 192 65 73 chr1 5530088 5530734 -276662930 - LTR48B LTR ERV1 0 644 4 7834 194 39 42 chr1 5530833 5533253 -276660411 - LTR48B-int LTR ERV1 -159 6172 3712 522 239 0 35 chr1 5533523 5533723 -276659941 - LTR48B-int LTR ERV1 -2378 2493 1745 499 191 9 0 chr1 5533910 5534015 -276659649 - LTR48B-int LTR ERV1 -2878 3453 3348 1983 168 52 5 chr1 5534092 5534461 -276659203 - LTR48B-int LTR ERV1 -2991 3340 2955 5013 201 113 118 chr1 5534494 5534756 -276658908 - LTR48B-int LTR ERV1 -4228 2103 1841 1552 82 5 0 chr1 5534756 5534962 -276658702 - L1PA7 LINE L1 -8 6146 5940 5013 201 113 118 chr1 5534962 5535614 -276658050 - LTR48B-int LTR ERV1 -4490 1841 1187 234 235 59 59 chr1 5535614 5535682 -276657982 - tRNA-Glu-GAG tRNA tRNA -1 74 7 5013 201 113 118 chr1 5535682 5536810 -276656854 - LTR48B-int LTR ERV1 -5144 1187 3 2576 176 37 82 chr1 5536815 5537487 -276656177 - LTR48B LTR ERV1 -1 643 2 302 153 17 0 chr1 5537547 5537606 -276656058 + (TCCA)n Simple_repeat Simple_repeat 3 62 0 376 136 17 0 chr1 5537609 5537668 -276655996 - MLT1E1 LTR MaLR -422 232 173 242 186 114 0 chr1 5537770 5537840 -276655824 - MLT1E1 LTR MaLR -482 172 95 218 257 257 28 chr1 5538079 5538223 -276655441 + MIR SINE MIR 51 227 -35 482 315 67 44 chr1 5539346 5539616 -276654048 - MLT1K LTR MaLR -4 584 309 261 336 171 9 chr1 5539701 5539912 -276653752 + MIR SINE MIR 8 252 -10 189 0 0 0 chr1 5540323 5540344 -276653320 + (CATTG)n Simple_repeat Simple_repeat 5 25 0 315 298 35 18 chr1 5540684 5540798 -276652866 + MIR SINE MIR 90 205 -57 180 125 0 0 chr1 5540889 5540921 -276652743 + (TTCA)n Simple_repeat Simple_repeat 3 34 0 256 330 21 0 chr1 5541376 5541473 -276652191 + MIR SINE MIR 78 176 -86 206 183 0 17 chr1 5541550 5541588 -276652076 + CT-rich Low_complexity Low_complexity 2 40 -20 2419 112 94 5 chr1 5541588 5541981 -276651683 + MSTA LTR MaLR 1 428 0 206 183 0 17 chr1 5541981 5542002 -276651662 + CT-rich Low_complexity Low_complexity 40 60 0 317 157 0 0 chr1 5543286 5543337 -276650327 - MLT2F LTR ERVL 0 663 613 264 245 0 31 chr1 5543341 5543439 -276650225 + (TATATG)n Simple_repeat Simple_repeat 1 95 0 244 163 12 105 chr1 5543439 5543459 -276650205 - MADE1 DNA Mariner 0 80 60 216 0 0 0 chr1 5543459 5543483 -276650181 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 244 163 12 105 chr1 5543483 5543506 -276650158 - MADE1 DNA Mariner -20 60 36 2279 107 3 0 chr1 5543506 5543806 -276649858 + AluSp SINE Alu 1 301 -12 244 163 12 105 chr1 5543806 5543847 -276649817 - MADE1 DNA Mariner -44 36 3 410 285 6 6 chr1 5543849 5544028 -276649636 + (TA)n Simple_repeat Simple_repeat 2 180 0 1702 194 94 11 chr1 5544032 5544393 -276649271 + MSTD LTR MaLR 3 393 -3 279 315 0 0 chr1 5544489 5544632 -276649032 + (TA)n Simple_repeat Simple_repeat 1 143 0 1488 242 24 11 chr1 5544632 5545004 -276648660 - MLT2C1 LTR ERVL -20 377 1 2152 230 63 8 chr1 5545272 5545751 -276647913 - MER70B LTR ERVL -73 505 1 2721 96 6 3 chr1 5545788 5546151 -276647513 + THE1B LTR MaLR 1 364 0 10912 96 34 34 chr1 5546152 5547731 -276645933 + THE1B-int LTR MaLR 2 1580 0 2325 125 17 8 chr1 5547733 5548092 -276645572 + THE1B LTR MaLR 3 364 0 7309 52 0 0 chr1 5548115 5549094 -276644570 - L1PA5 LINE L1 0 6154 5175 42138 63 2 4 chr1 5549105 5552425 -276641239 - L1PA4 LINE L1 0 6155 2851 2473 78 0 3 chr1 5552425 5552734 -276640930 - AluY SINE Alu -3 308 1 42138 63 2 4 chr1 5552734 5555580 -276638084 - L1PA4 LINE L1 -3304 2851 1 182 233 291 12 chr1 5555595 5555681 -276637983 - MIR SINE MIR -113 149 40 207 309 0 0 chr1 5555790 5555869 -276637795 + MIR SINE MIR 70 147 -61 569 233 0 6 chr1 5556642 5556822 -276636842 + CT-rich Low_complexity Low_complexity 2 180 0 283 255 59 10 chr1 5558288 5558390 -276635274 - MIR SINE MIR -72 190 84 2015 176 50 31 chr1 5558478 5558899 -276634765 + MLT1C LTR MaLR 2 430 -37 438 173 27 13 chr1 5559807 5559957 -276633707 + (CA)n Simple_repeat Simple_repeat 2 153 0 192 200 0 0 chr1 5561225 5561265 -276632399 + CT-rich Low_complexity Low_complexity 1 40 0 861 227 36 18 chr1 5562601 5562826 -276630838 - MLT1A1 LTR MaLR 0 365 137 1816 175 71 76 chr1 5562829 5563209 -276630455 - MSTB1 LTR MaLR 0 432 53 7236 58 0 2 chr1 5563209 5564439 -276629225 - L1PA6 LINE L1 0 6154 4923 1816 175 71 76 chr1 5564439 5564492 -276629172 - MSTB1 LTR MaLR -379 53 1 832 131 15 7 chr1 5564492 5564628 -276629036 - MLT1A1 LTR MaLR -225 140 4 2406 113 34 6 chr1 5565800 5566153 -276627511 + THE1B LTR MaLR 1 363 -1 2464 129 60 27 chr1 5566743 5567255 -276626409 + MLT2A2 LTR ERVL 3 554 0 494 322 40 5 chr1 5568692 5568901 -276624763 + MIR SINE MIR 13 226 -36 21 36 0 0 chr1 5568949 5568977 -276624687 + AT_rich Low_complexity Low_complexity 1 28 0 205 388 13 40 chr1 5570781 5570933 -276622731 - MIR SINE MIR -81 181 34 1874 243 67 47 chr1 5571135 5572255 -276621409 + HAL1 LINE L1 25 1200 -1307 925 195 25 66 chr1 5572331 5572572 -276621092 - MIR SINE MIR -29 233 3 1683 244 69 103 chr1 5572598 5573632 -276620032 + HAL1 LINE L1 1280 2275 -232 2139 125 14 0 chr1 5573632 5573929 -276619735 + AluSg SINE Alu 1 301 -9 1683 244 69 103 chr1 5573929 5574001 -276619663 + HAL1 LINE L1 2275 2348 -159 417 92 0 0 chr1 5574477 5574542 -276619122 + L1PA8 LINE L1 6108 6172 0 331 175 12 12 chr1 5574558 5574638 -276619026 + HAL1 LINE L1 2316 2395 -112 5647 105 8 5 chr1 5574705 5575503 -276618161 - L1PA13 LINE L1 -2 6161 5362 1312 184 23 13 chr1 5575503 5575812 -276617852 + L1P LINE L1 3064 3375 -2771 240 246 18 0 chr1 5575804 5575861 -276617803 + HAL1 LINE L1 2440 2497 -10 * 233 282 163 19 chr1 5575893 5576102 -276617562 + L1ME4a LINE L1 5815 6053 -68 1989 161 33 41 chr1 5576606 5576973 -276616691 - THE1B LTR MaLR 0 364 1 678 299 30 5 chr1 5577251 5577452 -276616212 - MER63A DNA MER1_type -4 206 1 204 264 42 14 chr1 5578266 5578338 -276615326 - L2 LINE L2 -5 3308 3235 1782 197 8 31 chr1 5579297 5579653 -276614011 - MSTD LTR MaLR -48 348 1 1782 246 59 17 chr1 5579662 5580239 -276613425 + L1ME2 LINE L1 5318 5918 -246 384 292 92 20 chr1 5580363 5580420 -276613244 + MLT1H LTR MaLR 23 74 -335 557 113 0 0 chr1 5580420 5580500 -276613164 - MADE1 DNA Mariner 0 80 1 384 292 92 20 chr1 5580500 5580697 -276612967 + MLT1H LTR MaLR 74 269 -140 307 308 77 8 chr1 5580734 5580864 -276612800 + MLT1H LTR MaLR 411 549 0 2142 118 16 3 chr1 5581399 5581705 -276611959 + AluY SINE Alu 2 311 0 1926 181 20 45 chr1 5581834 5582286 -276611378 + L1MB3 LINE L1 5740 6179 -4 2216 110 10 0 chr1 5582318 5582610 -276611054 + AluSx SINE Alu 1 295 -17 198 0 0 0 chr1 5583670 5583692 -276609972 + (CA)n Simple_repeat Simple_repeat 2 23 0 1839 182 20 47 chr1 5584255 5584444 -276609220 + MLT1B LTR MaLR 1 194 -196 2199 121 0 0 chr1 5584444 5584741 -276608923 + AluSg1 SINE Alu 1 297 -12 1839 182 20 47 chr1 5584741 5584952 -276608712 + MLT1B LTR MaLR 194 390 0 1931 146 58 28 chr1 5585950 5586314 -276607350 + THE1C LTR MaLR 1 375 0 1585 200 104 0 chr1 5587602 5587947 -276605717 - MLT1B LTR MaLR 0 390 10 365 303 35 21 chr1 5588079 5588224 -276605440 + L2 LINE L2 3126 3272 0 2182 142 27 33 chr1 5589216 5589582 -276604082 - THE1B LTR MaLR 0 364 1 11995 95 6 1 chr1 5589582 5591154 -276602510 - THE1B-int LTR MaLR 0 1580 1 2150 144 31 11 chr1 5591154 5591509 -276602155 - THE1B LTR MaLR 0 364 3 333 282 162 7 chr1 5591514 5591656 -276602008 + MIR SINE MIR 85 248 -14 318 320 107 78 chr1 5592036 5592386 -276601278 - L1MEc LINE L1 -4207 2103 1765 1250 58 0 0 chr1 5592386 5592540 -276601124 - L1PA8 LINE L1 -6 6166 6013 318 320 107 78 chr1 5592540 5592919 -276600745 - L1MEc LINE L1 -4545 1765 1353 238 308 47 18 chr1 5593007 5593176 -276600488 - L1MEc LINE L1 -4863 1256 1083 26 0 0 0 chr1 5593367 5593393 -276600271 + AT_rich Low_complexity Low_complexity 1 26 0 211 105 0 88 chr1 5593744 5593801 -276599863 + (CAAAAA)n Simple_repeat Simple_repeat 3 54 0 2482 125 22 5 chr1 5594234 5594603 -276599061 - THE1C LTR MaLR 0 375 1 25 0 0 0 chr1 5594994 5595019 -276598645 + AT_rich Low_complexity Low_complexity 1 25 0 2373 108 3 0 chr1 5595047 5595354 -276598310 + AluSc SINE Alu 1 308 -1 1911 191 3 6 chr1 5595379 5595735 -276597929 - MLT1A1 LTR MaLR -7 358 4 453 261 48 107 chr1 5597317 5597496 -276596168 - MIR SINE MIR -3 259 100 2321 116 0 0 chr1 5597496 5597799 -276595865 + AluSg SINE Alu 1 303 -7 453 261 48 107 chr1 5597799 5597891 -276595773 - MIR SINE MIR -162 100 4 1259 259 144 39 chr1 5598446 5599111 -276594553 - MER21B LTR ERV1 -125 738 4 1120 203 57 83 chr1 5600008 5600358 -276593306 - MLT1A2 LTR MaLR -33 341 1 2110 129 3 3 chr1 5600639 5600941 -276592723 - AluSx SINE Alu -10 302 1 1922 202 57 9 chr1 5602043 5602483 -276591181 - MLT1C LTR MaLR -6 461 1 339 316 115 21 chr1 5603228 5603646 -276590018 + L1ME4a LINE L1 5462 5918 -203 283 249 32 56 chr1 5603654 5603886 -276589778 + HAL1b LINE L1 1190 1307 -41 681 199 0 0 chr1 5604264 5604440 -276589224 + (TG)n Simple_repeat Simple_repeat 1 176 0 21 0 0 0 chr1 5604570 5604591 -276589073 + AT_rich Low_complexity Low_complexity 1 21 0 238 216 0 20 chr1 5605066 5605117 -276588547 + (TG)n Simple_repeat Simple_repeat 1 50 0 1372 244 59 47 chr1 5606102 5606372 -276587292 + MLT1D LTR MaLR 2 267 -238 2418 132 6 19 chr1 5606372 5606737 -276586927 - THE1B LTR MaLR -4 360 1 11620 100 20 4 chr1 5606737 5608292 -276585372 - THE1B-int LTR MaLR 0 1580 1 2377 137 8 14 chr1 5608292 5608658 -276585006 - THE1B LTR MaLR 0 364 1 1372 244 59 47 chr1 5608658 5608880 -276584784 + MLT1D LTR MaLR 266 502 -3 202 143 0 24 chr1 5610067 5610109 -276583555 + (TTAA)n Simple_repeat Simple_repeat 4 44 0 1647 302 3 2 chr1 5610455 5611044 -276582620 + HERVK13 LTR ERVK 1460 2049 -6067 2350 138 24 8 chr1 5611110 5611479 -276582185 - THE1C LTR MaLR 0 375 1 2778 209 22 30 chr1 5612556 5612729 -276580935 + MER77 LTR ERV1 1 174 -489 1677 206 159 43 chr1 5612729 5613195 -276580469 - MLT2B1 LTR ERVL 0 520 1 2778 209 22 30 chr1 5613195 5613552 -276580112 + MER77 LTR ERV1 174 577 -86 2340 100 21 0 chr1 5613552 5613881 -276579783 - L1PA13 LINE L1 -15 6148 5813 2778 209 22 30 chr1 5613881 5613962 -276579702 + MER77 LTR ERV1 577 657 -6 186 263 76 82 chr1 5614159 5614330 -276579334 + L2 LINE L2 2867 3036 -236 323 300 22 0 chr1 5614747 5614837 -276578827 - MER117 DNA MER1_type 0 197 106 1946 184 26 0 chr1 5615189 5615569 -276578095 + MLT1B LTR MaLR 1 390 0 1666 169 76 10 chr1 5617786 5618150 -276575514 - MLT1B LTR MaLR -1 466 1 2364 88 3 0 chr1 5618654 5618949 -276574715 - AluSq SINE Alu -12 301 6 25 0 0 0 chr1 5618957 5618982 -276574682 + AT_rich Low_complexity Low_complexity 1 25 0 2544 196 9 30 chr1 5618983 5619509 -276574155 - MLT2B2 LTR ERVL 0 515 1 200 292 0 56 chr1 5620011 5620083 -276573581 + L2 LINE L2 3219 3286 -27 279 0 0 0 chr1 5620417 5620448 -276573216 + (TA)n Simple_repeat Simple_repeat 2 32 0 2303 228 61 32 chr1 5621929 5621995 -276571669 - L1MB7 LINE L1 0 6183 6120 1999 100 3 57 chr1 5621995 5622320 -276571344 + AluSx SINE Alu 1 309 0 2263 90 0 7 chr1 5622320 5622609 -276571055 + AluSg SINE Alu 23 309 -1 2303 228 61 32 chr1 5622609 5623279 -276570385 - L1MB7 LINE L1 -62 6121 5444 210 310 40 20 chr1 5623949 5624049 -276569615 - MIR SINE MIR -71 191 90 207 331 40 47 chr1 5625320 5625468 -276568196 + MIR SINE MIR 77 223 -39 237 65 0 0 chr1 5626008 5626039 -276567625 + (GGGA)n Simple_repeat Simple_repeat 3 33 0 696 82 0 45 chr1 5626317 5626427 -276567237 - AluSp/q SINE Alu -5 308 204 251 212 0 15 chr1 5626804 5626870 -276566794 + CT-rich Low_complexity Low_complexity 4 68 0 339 269 65 11 chr1 5626910 5627003 -276566661 - MIR SINE MIR -151 111 14 286 316 77 31 chr1 5628149 5628345 -276565319 - L2 LINE L2 -261 3011 2807 222 338 0 15 chr1 5629634 5629702 -276563962 - MIR SINE MIR -171 91 25 275 350 78 5 chr1 5630220 5630426 -276563238 - MIR SINE MIR -12 250 30 2116 117 158 61 chr1 5631087 5631530 -276562134 - LTR19A LTR ERV1 0 486 1 592 25 37 0 chr1 5632060 5632141 -276561523 + (TAGA)n Simple_repeat Simple_repeat 2 85 0 1694 183 0 16 chr1 5632560 5632877 -276560787 - AluJo SINE Alu 0 312 1 2144 116 0 0 chr1 5633434 5633735 -276559929 - AluSx SINE Alu -11 301 1 334 250 103 17 chr1 5634757 5634873 -276558791 - MIR SINE MIR -115 147 22 1359 213 7 0 chr1 5634887 5635160 -276558504 + L1MB5 LINE L1 5637 5911 -263 2248 98 52 33 chr1 5635160 5635528 -276558136 + THE1C LTR MaLR 1 375 0 2358 135 16 21 chr1 5635616 5635993 -276557671 - THE1C LTR MaLR 0 375 1 382 282 13 39 chr1 5636028 5636184 -276557480 - L2 LINE L2 -1 3312 3161 1282 235 121 71 chr1 5636946 5637427 -276556237 + MLT1D LTR MaLR 1 505 0 2039 106 13 17 chr1 5638018 5638319 -276555345 + AluSx SINE Alu 1 300 -12 5738 62 1 0 chr1 5639530 5640240 -276553424 - L1PA3 LINE L1 -1 6154 5444 297 282 109 0 chr1 5642065 5642175 -276551489 + L2 LINE L2 3188 3309 -4 214 310 0 0 chr1 5642547 5642605 -276551059 - L2 LINE L2 -17 3296 3239 30 0 0 0 chr1 5642787 5642817 -276550847 + AT_rich Low_complexity Low_complexity 1 30 0 223 200 0 0 chr1 5644896 5644936 -276548728 + MIR SINE MIR 111 150 -112 2524 52 3 0 chr1 5645030 5645337 -276548327 - AluSx SINE Alu -4 308 1 2139 108 0 16 chr1 5646008 5646324 -276547340 + AluSx SINE Alu 1 311 -1 1433 75 5 0 chr1 5646384 5646571 -276547093 + AluSg SINE Alu 1 188 -122 212 337 153 3 chr1 5646873 5647214 -276546450 + L2 LINE L2 2583 2974 -340 1683 165 3 29 chr1 5647744 5648059 -276545605 - AluJo SINE Alu -5 307 1 217 200 0 33 chr1 5649019 5649079 -276544585 + T-rich Low_complexity Low_complexity 2 59 0 1856 202 16 0 chr1 5649330 5649697 -276543967 + L1MB2 LINE L1 5645 6017 -154 209 344 62 0 chr1 5752720 5752816 -276440848 - L2 LINE L2 -17 3255 3154 498 224 29 52 chr1 5754060 5754234 -276439430 - MER53 DNA DNA -19 170 1 180 125 0 0 chr1 5755321 5755353 -276438311 + (CA)n Simple_repeat Simple_repeat 1 32 0 312 210 17 28 chr1 5755391 5755572 -276438092 + (CA)n Simple_repeat Simple_repeat 2 180 0 207 204 0 0 chr1 5755594 5755638 -276438026 + (CA)n Simple_repeat Simple_repeat 2 45 0 229 317 0 0 chr1 5755677 5755737 -276437927 + (CA)n Simple_repeat Simple_repeat 1 60 0 194 283 0 10 chr1 5755752 5755851 -276437813 + (CA)n Simple_repeat Simple_repeat 1 98 0 455 222 0 6 chr1 5755929 5756109 -276437555 + (CA)n Simple_repeat Simple_repeat 1 179 0 342 215 0 0 chr1 5756128 5756258 -276437406 + (CA)n Simple_repeat Simple_repeat 1 130 0 182 281 53 0 chr1 5756963 5757020 -276436644 - MIR SINE MIR -159 103 44 2111 134 0 0 chr1 5759577 5759882 -276433782 - AluSx SINE Alu -7 305 1 558 242 5 0 chr1 5760867 5761307 -276432357 + (TG)n Simple_repeat Simple_repeat 1 442 0 633 226 0 0 chr1 5761319 5761788 -276431876 + (TG)n Simple_repeat Simple_repeat 1 469 0 2347 65 3 3 chr1 5763743 5764037 -276429627 - AluSx SINE Alu -18 294 1 250 273 227 18 chr1 5764804 5764914 -276428750 + L2 LINE L2 3140 3272 0 277 195 12 12 chr1 5765420 5765502 -276428162 + (TG)n Simple_repeat Simple_repeat 2 83 0 254 257 40 0 chr1 5765506 5765580 -276428084 + (TATATG)n Simple_repeat Simple_repeat 1 77 0 327 305 17 33 chr1 5765604 5765786 -276427878 + L1MC4 LINE L1 1995 6983 -1339 210 279 49 0 chr1 5765795 5765856 -276427808 + (CATG)n Simple_repeat Simple_repeat 3 66 0 319 157 29 0 chr1 5765858 5765928 -276427736 + (TG)n Simple_repeat Simple_repeat 1 72 0 190 200 0 109 chr1 5766714 5766769 -276426895 - L2 LINE L2 -23 3249 3201 858 212 0 5 chr1 5766887 5767071 -276426593 + MER96B DNA MER1_type? 49 231 -186 614 251 64 48 chr1 5767316 5767503 -276426161 - MIR SINE MIR -15 247 58 766 255 15 25 chr1 5768014 5768218 -276425446 - MER63A DNA MER1_type -8 202 1 452 320 33 7 chr1 5768565 5768718 -276424946 + MIR3 SINE MIR 18 174 -34 2361 81 0 0 chr1 5769604 5769899 -276423765 - AluY SINE Alu -16 295 1 319 265 10 20 chr1 5769954 5770052 -276423612 - MIR SINE MIR -66 142 46 261 277 219 0 chr1 5771082 5771237 -276422427 + L2 LINE L2 2297 2485 -829 414 341 6 43 chr1 5772093 5772257 -276421407 - L2 LINE L2 -7 3306 3149 1066 223 12 56 chr1 5772261 5772602 -276421062 + L1ME2 LINE L1 5839 6164 0 312 315 70 5 chr1 5772643 5772843 -276420821 + L1MC4 LINE L1 7829 8041 -1 1296 304 171 7 chr1 5772850 5773971 -276419693 - L2 LINE L2 -203 3110 1794 183 42 0 0 chr1 5773971 5773995 -276419669 + (TC)n Simple_repeat Simple_repeat 1 24 0 684 223 0 0 chr1 5773995 5774305 -276419359 + (CA)n Simple_repeat Simple_repeat 1 310 0 1777 172 53 42 chr1 5775120 5775481 -276418183 - MLT1A1 LTR MaLR 0 365 1 2163 81 3 3 chr1 5775496 5775804 -276417860 + AluSx SINE Alu 1 308 0 388 263 51 0 chr1 5776035 5776153 -276417511 - MER117 DNA MER1_type -5 192 69 339 291 29 0 chr1 5776187 5776290 -276417374 - MIR SINE MIR -67 141 36 444 293 57 0 chr1 5776623 5776763 -276416901 - MIR SINE MIR -6 256 109 769 244 96 46 chr1 5777704 5777747 -276415917 + MLT1C LTR MaLR 83 122 -471 1999 113 0 20 chr1 5777747 5778048 -276415616 + AluSx SINE Alu 18 312 0 769 244 96 46 chr1 5778048 5778360 -276415304 + MLT1C LTR MaLR 122 587 -6 194 304 18 0 chr1 5778461 5778517 -276415147 + MIR SINE MIR 117 173 -89 661 153 8 15 chr1 5779010 5779141 -276414523 + MLT1A1 LTR MaLR 1 130 -235 3317 130 2 2 chr1 5779141 5780094 -276413570 + L1P4 LINE L1 4831 5783 -382 7574 31 1 1 chr1 5780196 5781289 -276412375 + L1PA4 LINE L1 5058 6152 -3 798 79 0 40 chr1 5781289 5781410 -276412254 + L1PA8 LINE L1 6052 6172 0 1169 175 79 21 chr1 5781411 5781702 -276411962 + MLT2D LTR ERVL 107 414 0 571 309 73 16 chr1 5781867 5782058 -276411606 - MIR SINE MIR -13 249 48 429 264 16 24 chr1 5783520 5783645 -276410019 + MIR SINE MIR 104 227 -35 853 330 142 19 chr1 5784130 5784918 -276408746 + L2 LINE L2 2054 2938 -376 799 133 24 12 chr1 5784965 5785131 -276408533 + CT-rich Low_complexity Low_complexity 4 171 0 1214 151 11 0 chr1 5785162 5785347 -276408317 - AluSg/x SINE Alu -7 305 119 636 170 38 31 chr1 5785448 5785769 -276407895 + (ATGGTG)n Simple_repeat Simple_repeat 1 323 0 * 720 175 0 22 chr1 5785760 5785943 -276407721 + (ATG)n Simple_repeat Simple_repeat 1 179 0 744 296 21 0 chr1 5785962 5786202 -276407462 - MIR SINE MIR -2 260 16 237 309 112 59 chr1 5786264 5786416 -276407248 + MER5B DNA MER1_type 17 176 -2 199 354 50 0 chr1 5787748 5787847 -276405817 - MIR SINE MIR -68 140 37 1502 219 114 6 chr1 5787907 5788071 -276405593 + MLT1B LTR MaLR 1 146 -244 222 37 0 0 chr1 5788071 5788098 -276405566 + (TC)n Simple_repeat Simple_repeat 2 28 0 1502 219 114 6 chr1 5788098 5788285 -276405379 + MLT1B LTR MaLR 146 390 0 317 315 11 28 chr1 5789035 5789213 -276404451 + CT-rich Low_complexity Low_complexity 3 177 0 349 292 0 0 chr1 5789362 5789458 -276404206 + (CA)n Simple_repeat Simple_repeat 1 96 0 270 316 72 20 chr1 5790045 5790197 -276403467 + L2 LINE L2 3079 3238 -75 200 327 0 0 chr1 5790249 5790301 -276403363 + MIR SINE MIR 81 132 -76 235 88 0 0 chr1 5793535 5793569 -276400095 - MIR SINE MIR -63 145 112 340 303 40 0 chr1 5796253 5796352 -276397312 + L2 LINE L2 3168 3270 -2 286 317 10 19 chr1 5796518 5796622 -276397042 - MIR3 SINE MIR 0 208 106 2068 103 7 3 chr1 5796693 5796993 -276396671 - AluSx SINE Alu -11 301 1 287 265 0 15 chr1 5797022 5797090 -276396574 + MIR SINE MIR 119 185 -77 2193 196 44 4 chr1 5797604 5798124 -276395540 + MER74A LTR ERVL 16 556 -2 478 250 96 6 chr1 5799435 5799591 -276394073 + MER117 DNA MER1_type 1 170 -27 205 273 36 0 chr1 5799648 5799703 -276393961 + L2 LINE L2 3243 3299 -14 1080 124 0 0 chr1 5800711 5800889 -276392775 + (TTCA)n Simple_repeat Simple_repeat 3 180 0 203 138 0 0 chr1 5800890 5800919 -276392745 + (CTCA)n Simple_repeat Simple_repeat 1 29 0 192 271 29 57 chr1 5801831 5801901 -276391763 + MIR SINE MIR 86 153 -55 496 278 139 0 chr1 5801905 5802078 -276391586 + MIR SINE MIR 31 227 -35 243 239 0 0 chr1 5802646 5802713 -276390951 + (CA)n Simple_repeat Simple_repeat 1 67 0 195 294 15 15 chr1 5804126 5804194 -276389470 + L2 LINE L2 3241 3308 -5 * 323 296 117 39 chr1 5804186 5804416 -276389248 + L2 LINE L2 3066 3313 0 448 220 8 42 chr1 5805988 5806106 -276387558 - MER117 DNA MER1_type -18 179 66 1192 103 16 0 chr1 5806243 5806428 -276387236 + MER30 DNA MER1_type 43 230 0 981 147 76 5 chr1 5806429 5806627 -276387037 + MER2 DNA MER2_type 133 344 -1 378 0 0 0 chr1 5806628 5806670 -276386994 + (TG)n Simple_repeat Simple_repeat 1 42 0 1494 161 140 9 chr1 5806671 5807020 -276386644 + L1MC4 LINE L1 6690 7084 -958 686 217 29 11 chr1 5807023 5807198 -276386466 + L1MC4 LINE L1 7238 7415 -627 * 5068 110 7 21 chr1 5807194 5807763 -276385901 + L1PA10 LINE L1 5334 5889 -279 2455 74 0 3 chr1 5807763 5808075 -276385589 + AluY SINE Alu 1 311 0 5068 110 7 21 chr1 5808075 5808351 -276385313 + L1PA10 LINE L1 5889 6167 -1 1064 234 162 13 chr1 5808386 5808780 -276384884 + L1MC4 LINE L1 7447 7899 -143 1896 177 41 66 chr1 5808966 5809406 -276384258 + MSTB1 LTR MaLR 1 429 -3 2672 93 8 3 chr1 5809605 5809958 -276383706 + THE1A LTR MaLR 1 355 0 681 236 127 0 chr1 5809963 5810120 -276383544 - MER45A DNA AcHobo 0 178 2 3825 91 0 8 chr1 5810153 5810671 -276382993 - MER75 DNA T2_type 0 514 1 943 241 57 75 chr1 5810671 5810854 -276382810 + L1ME4a LINE L1 5638 5823 -298 2162 77 0 11 chr1 5810854 5811140 -276382524 + AluY SINE Alu 1 283 -28 378 0 0 0 chr1 5811140 5811182 -276382482 + (CA)n Simple_repeat Simple_repeat 2 43 0 1630 96 0 237 chr1 5811191 5811587 -276382077 + AluSx SINE Alu 1 302 0 943 241 57 75 chr1 5811587 5811738 -276381926 + L1ME4a LINE L1 5830 5974 -147 207 0 0 0 chr1 5811738 5811761 -276381903 + (CAA)n Simple_repeat Simple_repeat 2 24 0 943 241 57 75 chr1 5811761 5811904 -276381760 + L1ME4a LINE L1 5974 6118 -3 21 0 0 0 chr1 5811951 5811972 -276381692 + AT_rich Low_complexity Low_complexity 1 21 0 292 286 26 78 chr1 5812000 5812154 -276381510 - L2 LINE L2 -3 3310 3165 235 239 15 30 chr1 5812831 5812898 -276380766 + GA-rich Low_complexity Low_complexity 2 67 0 204 40 0 0 chr1 5813757 5813782 -276379882 + (TCCA)n Simple_repeat Simple_repeat 4 28 0 554 311 75 43 chr1 5813792 5814114 -276379550 - L2 LINE L2 0 3272 2941 254 219 96 14 chr1 5814432 5814505 -276379159 + MER91C DNA MER1_type 32 110 -30 870 256 85 50 chr1 5814516 5814918 -276378746 - Charlie8 DNA MER1_type -1946 471 56 338 251 31 115 chr1 5815303 5815342 -276378322 - MER69A DNA AcHobo -2351 175 134 1547 160 7 28 chr1 5815342 5815629 -276378035 - AluJo SINE Alu -8 304 24 338 251 31 115 chr1 5815629 5815719 -276377945 - MER69A DNA AcHobo -2392 134 64 982 257 30 5 chr1 5815719 5815921 -276377743 - MER63A DNA MER1_type -3 207 1 338 251 31 115 chr1 5815921 5815981 -276377683 - MER69A DNA AcHobo -2462 64 1 315 146 0 0 chr1 5819015 5819070 -276374594 + (TCCCC)n Simple_repeat Simple_repeat 4 58 0 2290 102 0 13 chr1 5820068 5820382 -276373282 - AluSx SINE Alu -2 310 1 1403 184 26 22 chr1 5821442 5821714 -276371950 + AluJo SINE Alu 39 311 -1 370 260 24 32 chr1 5822572 5822695 -276370969 - MIR SINE MIR -34 228 107 249 83 0 0 chr1 5822796 5822832 -276370832 + (TCCC)n Simple_repeat Simple_repeat 1 36 0 187 287 49 91 chr1 5822841 5822887 -276370777 - L2 LINE L2 -1 3312 3266 2336 90 3 7 chr1 5822887 5823197 -276370467 + AluSq SINE Alu 1 309 -4 187 287 49 91 chr1 5823197 5823293 -276370371 - L2 LINE L2 -47 3266 3176 308 287 74 9 chr1 5823352 5823460 -276370204 + MIR SINE MIR 24 138 -124 429 327 140 5 chr1 5824154 5824368 -276369296 - MIR SINE MIR -4 258 16 554 310 59 5 chr1 5824381 5824568 -276369096 + MIR SINE MIR 3 199 -63 467 59 0 15 chr1 5825148 5825216 -276368448 + (TTCA)n Simple_repeat Simple_repeat 2 68 0 252 333 0 0 chr1 5825577 5825706 -276367958 + L1ME4a LINE L1 5988 6116 -5 260 303 220 8 chr1 5826710 5826842 -276366822 + MIR SINE MIR 49 208 -54 621 170 79 6 chr1 5827883 5828048 -276365616 - MER96B DNA MER1_type? -240 177 1 207 167 0 0 chr1 5829011 5829053 -276364611 + (TGAA)n Simple_repeat Simple_repeat 1 42 0 3961 224 39 50 chr1 5829328 5829770 -276363894 + L1MD1 LINE L1 3956 4401 -1841 1869 134 3 26 chr1 5829770 5830075 -276363589 - AluSg SINE Alu -12 298 1 3961 224 39 50 chr1 5830075 5830087 -276363577 + L1MD1 LINE L1 4401 4412 -1830 2301 86 0 19 chr1 5830087 5830400 -276363264 - AluY SINE Alu -4 307 1 3961 224 39 50 chr1 5830400 5830830 -276362834 + L1MD1 LINE L1 4412 4845 -1397 2174 110 7 3 chr1 5830830 5831131 -276362533 + AluSq SINE Alu 1 302 -11 3961 224 39 50 chr1 5831131 5832150 -276361514 + L1MD1 LINE L1 4845 5833 -409 2182 91 0 20 chr1 5832152 5832448 -276361216 + AluSg SINE Alu 5 294 -16 207 0 0 0 chr1 5832511 5832534 -276361130 + (CA)n Simple_repeat Simple_repeat 2 24 0 1007 189 41 5 chr1 5832534 5832730 -276360934 + L1MD2 LINE L1 6154 6356 -3 255 311 205 6 chr1 5836465 5836626 -276357038 - MIR SINE MIR 0 262 70 414 321 103 19 chr1 5836644 5836906 -276356758 + L1ME4a LINE L1 5614 5897 -224 263 335 44 0 chr1 5836919 5837077 -276356587 + L1ME4a LINE L1 5955 6119 -2 237 268 0 56 chr1 5837366 5837437 -276356227 - MIR3 SINE MIR -4 204 138 340 255 97 0 chr1 5838519 5838631 -276355033 - MIR SINE MIR -75 133 8 1830 195 120 24 chr1 5839876 5840024 -276353640 + MLT1C LTR MaLR 1 133 -334 372 77 0 0 chr1 5840024 5840076 -276353588 + (TG)n Simple_repeat Simple_repeat 2 53 0 2147 101 3 0 chr1 5840076 5840362 -276353302 - AluSp SINE Alu -26 287 1 1830 195 120 24 chr1 5840362 5840637 -276353027 + MLT1C LTR MaLR 132 466 -1 636 313 119 13 chr1 5840722 5841099 -276352565 + L2 LINE L2 2455 2871 -443 339 283 70 89 chr1 5841596 5841854 -276351810 + L2 LINE L2 3046 3298 -15 234 62 0 0 chr1 5841855 5841887 -276351777 + (TGAA)n Simple_repeat Simple_repeat 1 32 0 226 336 179 9 chr1 5842561 5842784 -276350880 - MIR SINE MIR 0 262 2 307 282 18 45 chr1 5843649 5843759 -276349905 + MER5B DNA MER1_type 36 142 -36 229 248 9 9 chr1 5845250 5845359 -276348305 + CT-rich Low_complexity Low_complexity 2 110 0 406 247 11 0 chr1 5845359 5845452 -276348212 - L2 LINE L2 0 3272 3179 320 368 21 7 chr1 5845832 5845976 -276347688 + MIR SINE MIR 103 248 -14 200 158 18 0 chr1 5846804 5846861 -276346803 + (TG)n Simple_repeat Simple_repeat 1 58 0 306 359 78 51 chr1 5847943 5848199 -276345465 - L1M4 LINE L1 -2799 3347 3085 5983 33 1 2 chr1 5848314 5849108 -276344556 - L1P LINE L1 -1747 4399 3607 7309 56 12 7 chr1 5849108 5850560 -276343104 - SVA Other Other -839 1386 44 229 296 70 0 chr1 5851030 5851101 -276342563 - MIR SINE MIR -127 135 60 466 354 143 0 chr1 5851320 5851543 -276342121 - MIR SINE MIR -3 259 5 186 103 0 0 chr1 5851849 5851878 -276341786 + (TGAA)n Simple_repeat Simple_repeat 4 32 0 339 328 173 9 chr1 5852857 5853186 -276340478 - L2 LINE L2 -1138 2176 1794 656 228 0 12 chr1 5853207 5853723 -276339941 + (CA)n Simple_repeat Simple_repeat 1 509 0 204 125 0 0 chr1 5853952 5853984 -276339680 + (AGCTG)n Simple_repeat Simple_repeat 3 34 0 182 328 17 17 chr1 5857164 5857280 -276336384 + L2 LINE L2 2991 3106 -166 193 225 0 0 chr1 5857729 5857769 -276335895 + L2 LINE L2 3151 3190 -82 204 282 70 92 chr1 5857772 5857914 -276335750 + MIR SINE MIR 50 188 -74 446 325 27 37 chr1 5859126 5859314 -276334350 - MIR SINE MIR -6 256 71 373 286 0 0 chr1 5859320 5859404 -276334260 - MIR SINE MIR -108 154 71 379 286 0 0 chr1 5859410 5859494 -276334170 - MIR SINE MIR -108 154 71 273 317 10 40 chr1 5860977 5861078 -276332586 + MIR SINE MIR 62 159 -103 288 312 52 13 chr1 5861955 5862109 -276331555 + MIR3 SINE MIR 30 189 -19 185 111 44 0 chr1 5862420 5862465 -276331199 + (CAGA)n Simple_repeat Simple_repeat 2 48 0 219 69 0 0 chr1 5865828 5865857 -276327807 + (GGAA)n Simple_repeat Simple_repeat 1 29 0 237 197 211 0 chr1 5866388 5866459 -276327205 - MARNA DNA Mariner -224 362 277 22 0 0 0 chr1 5869625 5869647 -276324017 + AT_rich Low_complexity Low_complexity 1 22 0 6084 114 4 10 chr1 5870220 5871550 -276322114 + L1PA15 LINE L1 4842 6165 0 1138 192 37 4 chr1 5871551 5871796 -276321868 + MLT1A1 LTR MaLR 113 365 0 337 253 118 56 chr1 5871879 5872057 -276321607 - MIR SINE MIR -53 209 21 700 177 7 7 chr1 5873036 5873315 -276320349 + (ATG)n Simple_repeat Simple_repeat 1 279 0 902 139 7 39 chr1 5873249 5873593 -276320071 + (ATGGTG)n Simple_repeat Simple_repeat 1 332 0 720 169 14 41 chr1 5873613 5873979 -276319685 + (ATGGTG)n Simple_repeat Simple_repeat 1 355 0 3813 152 126 32 chr1 5875439 5876194 -276317470 + LTR1B LTR ERV1 1 826 0 637 217 30 18 chr1 5876679 5876845 -276316819 + MER96B DNA MER1_type? 16 183 -234 423 325 100 0 chr1 5876949 5877109 -276316555 - MIR SINE MIR -79 183 8 263 326 54 16 chr1 5877659 5877788 -276315876 - L2 LINE L2 -1 3271 3138 271 293 27 0 chr1 5878102 5878177 -276315487 - MIR3 SINE MIR -31 177 101 364 280 47 0 chr1 5878287 5878394 -276315270 - MIR SINE MIR -59 149 38 1768 140 0 4 chr1 5880137 5880401 -276313263 + AluSx SINE Alu 38 300 -12 229 162 0 0 chr1 5880401 5880438 -276313226 - Alu SINE Alu -96 37 1 310 287 113 40 chr1 5880505 5880655 -276313009 + L2 LINE L2 3153 3313 0 226 261 98 33 chr1 5880855 5880947 -276312717 + MIR SINE MIR 34 131 -77 364 303 83 51 chr1 5881625 5881692 -276311972 - L2 LINE L2 -249 3064 3001 2207 108 0 0 chr1 5881692 5881980 -276311684 + AluSq SINE Alu 1 318 0 196 100 0 0 chr1 5881980 5882010 -276311654 + (TAAA)n Simple_repeat Simple_repeat 3 36 0 364 303 83 51 chr1 5882010 5882267 -276311397 - L2 LINE L2 -312 3001 2730 204 245 0 0 chr1 5882954 5883003 -276310661 + A-rich Low_complexity Low_complexity 6 54 0 525 319 113 7 chr1 5888200 5888667 -276304997 + L2 LINE L2 2647 3158 -155 1311 166 92 0 chr1 5888667 5888938 -276304726 + MER46C DNA MER2_type 1 296 -42 745 194 27 21 chr1 5888941 5889127 -276304537 - MER20 DNA MER1_type -4 215 29 233 379 42 0 chr1 5889212 5889307 -276304357 + L2 LINE L2 3151 3249 -23 1293 202 121 57 chr1 5889309 5889765 -276303899 + MER31A LTR ERV1 1 485 0 336 333 157 0 chr1 5890347 5890500 -276303164 - L3 LINE CR1 -107 1470 1294 1180 267 124 2 chr1 5890998 5891440 -276302224 + MLT1J LTR MaLR 7 502 -9 247 368 86 31 chr1 5891943 5892106 -276301558 - MIR SINE MIR -71 191 20 546 215 90 7 chr1 5892860 5893004 -276300660 - MIR SINE MIR -30 232 77 2310 112 0 0 chr1 5894012 5894324 -276299340 + AluSx SINE Alu 1 312 0 320 288 130 14 chr1 5894332 5894478 -276299186 + MIR SINE MIR 20 182 -80 738 187 42 17 chr1 5894930 5895263 -276298401 + MSTD LTR MaLR 2 396 0 991 190 78 5 chr1 5895957 5896162 -276297502 + MER58A DNA MER1_type 1 220 -4 928 149 9 0 chr1 5896665 5896901 -276296763 + (TCCA)n Simple_repeat Simple_repeat 1 238 0 180 336 168 9 chr1 5896913 5897026 -276296638 - L2 LINE L2 -16 3256 3126 319 212 176 0 chr1 5898040 5898125 -276295539 + MLT2D LTR ERVL 17 116 -298 26168 52 2 9 chr1 5898127 5901775 -276291889 + L1P LINE L1 1 3621 -2525 653 66 11 0 chr1 5901789 5901880 -276291784 + (GGAA)n Simple_repeat Simple_repeat 1 92 0 216 156 16 31 chr1 5902086 5902150 -276291514 + GA-rich Low_complexity Low_complexity 4 66 0 356 301 15 15 chr1 5902213 5902346 -276291318 + GA-rich Low_complexity Low_complexity 4 136 0 242 195 55 37 chr1 5902461 5902625 -276291039 + (TTGTG)n Simple_repeat Simple_repeat 4 170 0 28 0 0 0 chr1 5903345 5903373 -276290291 + AT_rich Low_complexity Low_complexity 1 28 0 330 355 69 31 chr1 5903675 5904044 -276289620 - L1MEd LINE L1 -1205 1302 895 495 213 62 19 chr1 5904625 5904785 -276288879 - MER58 DNA MER1_type -132 209 43 2044 114 38 0 chr1 5904788 5905078 -276288586 + AluSx SINE Alu 1 301 -11 1050 82 0 0 chr1 5905080 5905214 -276288450 + AluSp/q SINE Alu 166 299 -14 789 156 12 42 chr1 5905774 5905941 -276287723 - MER3 DNA MER1_type 0 209 48 232 303 81 0 chr1 5907036 5907135 -276286529 - L2 LINE L2 -216 3056 2950 332 327 27 9 chr1 5908079 5908189 -276285475 - MIR SINE MIR -131 131 20 288 355 50 21 chr1 5908928 5909069 -276284595 - MIR SINE MIR -80 182 38 22 0 0 0 chr1 5910049 5910071 -276283593 + AT_rich Low_complexity Low_complexity 1 22 0 273 256 0 44 chr1 5910222 5910312 -276283352 + G-rich Low_complexity Low_complexity 3 88 0 672 180 6 17 chr1 5910965 5911143 -276282521 + CT-rich Low_complexity Low_complexity 3 178 0 277 368 0 11 chr1 5912255 5912350 -276281314 + MIR SINE MIR 63 156 -106 353 329 124 9 chr1 5912715 5912925 -276280739 + MIR SINE MIR 15 248 -14 2348 231 30 0 chr1 5914358 5914916 -276278748 + L1MB5 LINE L1 5587 6161 -13 339 318 32 16 chr1 5915087 5915213 -276278451 - L2 LINE L2 -1 3271 3144 205 291 55 36 chr1 5917025 5917135 -276276529 - MIR SINE MIR -70 192 81 2130 123 7 0 chr1 5917488 5917798 -276275866 - AluSx SINE Alu 0 312 1 2131 166 17 6 chr1 5918408 5918769 -276274895 + MLT1A1 LTR MaLR 1 365 0 372 274 86 8 chr1 5919303 5919420 -276274244 + MIR SINE MIR 15 140 -122 296 241 97 14 chr1 5920099 5920244 -276273420 + MER20 DNA MER1_type 6 162 -57 214 400 12 0 chr1 5920491 5920571 -276273093 - L3 LINE CR1 -25 1552 1472 24 32 0 0 chr1 5920954 5920985 -276272679 + AT_rich Low_complexity Low_complexity 1 31 0 296 376 43 12 chr1 5921216 5921378 -276272286 - MIR3 SINE MIR -15 193 27 386 340 62 14 chr1 5922294 5922438 -276271226 + L2 LINE L2 3118 3268 -4 376 316 39 32 chr1 5923911 5924066 -276269598 - L2 LINE L2 0 3272 3117 476 302 31 0 chr1 5924381 5924510 -276269154 + L2 LINE L2 3180 3312 -1 602 358 5 10 chr1 5924510 5924717 -276268947 - MIR SINE MIR -50 212 7 181 276 171 33 chr1 5925558 5925710 -276267954 + L2 LINE L2 2911 3083 -189 230 279 103 0 chr1 5927334 5927402 -276266262 - MIR3 SINE MIR -30 178 104 275 350 108 5 chr1 5928311 5928505 -276265159 - MIR SINE MIR -29 233 20 299 318 216 25 chr1 5929112 5929474 -276264190 + L2 LINE L2 2883 3313 0 1292 209 159 0 chr1 5929629 5930007 -276263657 + MLT1C LTR MaLR 2 439 -28 212 260 7 123 chr1 5931975 5932021 -276261643 + L2 LINE L2 3136 3186 -86 821 194 123 83 chr1 5932021 5932193 -276261471 + MLT1A1 LTR MaLR 1 165 -200 1970 151 6 35 chr1 5932193 5932510 -276261154 - AluJb SINE Alu -4 308 1 821 194 123 83 chr1 5932510 5932687 -276260977 + MLT1A1 LTR MaLR 165 364 -1 212 260 7 123 chr1 5932687 5932786 -276260878 + L2 LINE L2 3186 3264 -8 234 0 0 0 chr1 5932787 5932813 -276260851 + (TGAA)n Simple_repeat Simple_repeat 1 26 0 1289 216 23 20 chr1 5933413 5933719 -276259945 - L1MD1 LINE L1 -136 6106 5800 472 284 77 0 chr1 5934901 5935056 -276258608 + MIR SINE MIR 32 198 -64 419 250 0 17 chr1 5936671 5936847 -276256817 + (CAT)n Simple_repeat Simple_repeat 3 175 0 201 154 0 0 chr1 5936872 5936911 -276256753 + (CACCAT)n Simple_repeat Simple_repeat 6 44 0 569 220 0 16 chr1 5936972 5937154 -276256510 + (CAT)n Simple_repeat Simple_repeat 1 179 0 2512 99 74 8 chr1 5937183 5937576 -276256088 + MSTA LTR MaLR 9 427 -1 701 156 24 12 chr1 5937615 5937782 -276255882 + (CACCAT)n Simple_repeat Simple_repeat 4 172 0 492 233 0 0 chr1 5937785 5937931 -276255733 + (CAT)n Simple_repeat Simple_repeat 2 147 0 612 300 40 18 chr1 5937934 5938161 -276255503 - MIR SINE MIR -3 259 28 204 238 16 32 chr1 5938356 5938419 -276255245 - L2 LINE L2 -3 3269 3208 389 316 8 15 chr1 5938906 5939039 -276254625 - L2 LINE L2 -3 3310 3179 183 274 0 20 chr1 5941269 5941320 -276252344 + L2 LINE L2 3205 3254 -18 2381 88 7 0 chr1 5943768 5944073 -276249591 - AluSq SINE Alu -6 307 1 256 350 68 0 chr1 5944536 5944653 -276249011 + MIR SINE MIR 28 152 -110 507 239 88 19 chr1 5945582 5945741 -276247923 - MIR SINE MIR -29 233 64 2354 115 0 3 chr1 5945808 5946121 -276247543 + AluSq SINE Alu 1 312 -1 892 285 139 50 chr1 5946746 5947805 -276245859 - L2 LINE L2 -2 3311 2086 2316 118 3 3 chr1 5947805 5948118 -276245546 + AluSq SINE Alu 1 313 0 892 285 139 50 chr1 5948118 5948161 -276245503 - L2 LINE L2 -1227 2086 2048 1134 275 193 15 chr1 5948227 5948763 -276244901 - L2 LINE L2 -518 2796 2116 2160 134 0 10 chr1 5948763 5949068 -276244596 + AluSx SINE Alu 1 302 -10 1134 275 193 15 chr1 5949068 5949201 -276244463 - L2 LINE L2 -1198 2116 2008 43279 35 2 3 chr1 5949339 5955504 -276238160 + L1PA4 LINE L1 4 6155 0 181 222 44 0 chr1 5955547 5955592 -276238072 - L2 LINE L2 0 3272 3226 1657 81 36 5 chr1 5955705 5955926 -276237738 - AluSc SINE Alu -3 306 79 774 113 0 0 chr1 5956240 5956364 -276237300 + (CA)n Simple_repeat Simple_repeat 1 124 0 299 253 13 0 chr1 5958432 5958507 -276235157 + MIR3 SINE MIR 112 187 -21 193 370 50 0 chr1 5958920 5959020 -276234644 - L2 LINE L2 -6 3266 3162 399 224 0 0 chr1 5960595 5960702 -276232962 + (TG)n Simple_repeat Simple_repeat 2 108 0 263 258 124 0 chr1 5961489 5961578 -276232086 - MIR SINE MIR -77 185 86 1978 157 0 22 chr1 5961590 5961908 -276231756 + AluJb SINE Alu 1 311 -1 188 53 35 70 chr1 5962298 5962355 -276231309 + (CAAA)n Simple_repeat Simple_repeat 2 56 0 240 317 67 0 chr1 5963137 5963257 -276230407 + MIR SINE MIR 121 248 -14 418 291 53 5 chr1 5963312 5963501 -276230163 + MIR SINE MIR 50 247 -15 374 327 53 68 chr1 5963683 5963895 -276229769 + L2 LINE L2 2966 3175 -97 2271 92 17 3 chr1 5963895 5964189 -276229475 - AluSq SINE Alu -13 300 3 374 327 53 68 chr1 5964189 5964257 -276229407 + L2 LINE L2 3175 3242 -30 3193 195 61 31 chr1 5965433 5966386 -276227278 + L1ME1 LINE L1 4304 5282 -864 15128 184 22 24 chr1 5966471 5967778 -276225886 + L1MA6 LINE L1 2097 3406 -4313 2299 143 18 39 chr1 5967778 5968219 -276225445 - MSTB1 LTR MaLR 0 432 1 15128 184 22 24 chr1 5968219 5969023 -276224641 + L1MA6 LINE L1 3406 4211 -3508 405 0 0 0 chr1 5969023 5969068 -276224596 + (TA)n Simple_repeat Simple_repeat 2 46 0 360 0 0 0 chr1 5969067 5969107 -276224557 + (GA)n Simple_repeat Simple_repeat 2 41 0 * 15128 184 22 24 chr1 5969068 5970818 -276222846 + L1MA6 LINE L1 4211 5964 -1755 2466 157 19 7 chr1 5970818 5971245 -276222419 - MSTB1 LTR MaLR 0 432 1 15128 184 22 24 chr1 5971245 5972079 -276221585 + L1MA6 LINE L1 5964 6799 -920 2353 115 0 0 chr1 5972079 5972392 -276221272 + AluSq SINE Alu 1 313 0 420 37 0 0 chr1 5972396 5972450 -276221214 + (CA)n Simple_repeat Simple_repeat 1 54 0 15128 184 22 24 chr1 5972450 5973699 -276219965 + L1MA6 LINE L1 6802 7719 0 1663 143 4 50 chr1 5973727 5974007 -276219657 + AluJo SINE Alu 44 310 -2 3011 221 48 39 chr1 5974015 5974192 -276219472 + L1ME1 LINE L1 5326 5500 -666 1568 144 9 114 chr1 5974192 5974364 -276219300 - AluJo SINE Alu -13 299 111 249 33 0 0 chr1 5974364 5974394 -276219270 + (ATTG)n Simple_repeat Simple_repeat 4 33 0 1927 118 22 4 chr1 5974394 5974665 -276218999 - AluSx SINE Alu -32 280 5 1568 144 9 114 chr1 5974665 5974707 -276218957 - AluJo SINE Alu -200 112 67 2292 98 10 0 chr1 5974707 5975003 -276218661 + AluSp SINE Alu 1 299 -14 1568 144 9 114 chr1 5975003 5975120 -276218544 - AluJo SINE Alu -245 67 1 3011 221 48 39 chr1 5975120 5975769 -276217895 + L1ME1 LINE L1 5500 6160 -6 347 271 0 0 chr1 5975791 5975876 -276217788 + MIR SINE MIR 78 162 -100 270 0 0 0 chr1 5975903 5975933 -276217731 + (CA)n Simple_repeat Simple_repeat 2 31 0 2322 91 14 0 chr1 5975965 5976261 -276217403 + AluSp SINE Alu 1 300 -13 300 287 17 9 chr1 5976655 5976770 -276216894 - MIR SINE MIR -84 178 63 378 254 145 29 chr1 5979067 5979205 -276214459 - MIR SINE MIR -62 200 47 254 400 52 0 chr1 5980473 5980628 -276213036 - MIR SINE MIR -50 212 50 1728 85 0 0 chr1 5981958 5982169 -276211495 + AluY SINE Alu 86 296 -15 181 234 170 21 chr1 5983312 5983406 -276210258 + L2 LINE L2 3185 3292 -21 396 217 0 0 chr1 5983415 5983553 -276210111 + (CAT)n Simple_repeat Simple_repeat 2 139 0 250 185 19 0 chr1 5983576 5983630 -276210034 + (CACCAT)n Simple_repeat Simple_repeat 1 55 0 801 264 39 43 chr1 5983633 5983887 -276209777 - MIR SINE MIR -6 256 4 520 244 0 60 chr1 5984152 5984320 -276209344 + L2 LINE L2 3156 3313 0 401 0 20 0 chr1 5984387 5984436 -276209228 + (TCTA)n Simple_repeat Simple_repeat 1 50 0 707 272 46 22 chr1 5984978 5985340 -276208324 + MLT1J LTR MaLR 1 431 -80 6423 13 5 0 chr1 5985340 5986123 -276207541 + L1PA3 LINE L1 5385 6171 0 707 272 46 22 chr1 5986123 5986198 -276207466 + MLT1J LTR MaLR 431 503 -8 234 213 0 0 chr1 5986293 5986340 -276207324 + MIR SINE MIR 203 249 -13 2353 103 3 0 chr1 5986665 5986966 -276206698 - AluSp SINE Alu -9 304 3 1986 194 36 2 chr1 5988485 5988934 -276204730 - L1MB5 LINE L1 0 6174 5711 728 251 22 27 chr1 5989158 5989314 -276204350 - MER58A DNA MER1_type -2197 223 67 1892 125 4 7 chr1 5989314 5989586 -276204078 - AluSx SINE Alu -4 308 38 728 251 22 27 chr1 5989586 5989652 -276204012 - MER58A DNA MER1_type -2353 67 2 356 331 106 11 chr1 5989670 5989954 -276203710 + MLT1K LTR MaLR 188 498 -90 255 294 78 10 chr1 5992362 5992464 -276201200 + MIR SINE MIR 49 157 -105 721 201 16 58 chr1 5993971 5994160 -276199504 + MER20 DNA MER1_type 39 219 0 448 332 65 14 chr1 5994388 5994605 -276199059 + MIR SINE MIR 2 229 -33 190 370 43 0 chr1 5995264 5995356 -276198308 + MIR SINE MIR 29 124 -84 292 253 152 40 chr1 5995360 5995459 -276198205 - MER20 DNA MER1_type -109 110 1 2207 95 3 11 chr1 5995701 5996021 -276197643 + AluSx SINE Alu 1 318 0 2537 81 0 0 chr1 5996050 5996360 -276197304 + AluY SINE Alu 1 310 -1 1036 262 128 19 chr1 5997426 5997849 -276195815 + MER77 LTR ERV1 122 590 -15 200 342 25 0 chr1 5998482 5998561 -276195103 - L2 LINE L2 -8 3264 3184 262 235 141 24 chr1 6001123 6001208 -276192456 - L2 LINE L2 -3 3310 3216 324 70 0 0 chr1 6002361 6002404 -276191260 + (TTCA)n Simple_repeat Simple_repeat 1 43 0 485 121 0 48 chr1 6002733 6002816 -276190848 + AluJ/FRAM SINE Alu 222 300 -12 1025 165 43 0 chr1 6002839 6003027 -276190637 + MLT1A1 LTR MaLR 170 365 0 235 302 12 23 chr1 6003035 6003121 -276190543 + L2 LINE L2 3228 3312 -1 228 269 90 30 chr1 6003193 6003327 -276190337 + MIR3 SINE MIR 67 208 0 224 250 44 19 chr1 6004741 6004901 -276188763 + (CAACT)n Simple_repeat Simple_repeat 1 164 0 233 330 60 13 chr1 6005791 6006012 -276187652 + L2 LINE L2 2973 3270 -2 506 258 35 61 chr1 6006632 6006830 -276186834 - MIR SINE MIR -19 243 51 1891 178 102 2 chr1 6006992 6007413 -276186251 + MLT1C LTR MaLR 1 463 -4 317 265 102 7 chr1 6009702 6009849 -276183815 - MIR SINE MIR -57 205 45 490 311 78 5 chr1 6010336 6010542 -276183122 - MIR SINE MIR -41 221 1 680 270 148 33 chr1 6011286 6011830 -276181834 - L2 LINE L2 -266 3047 2421 1039 127 6 19 chr1 6011846 6012027 -276181637 - AluJb SINE Alu 0 312 134 2246 127 0 13 chr1 6012027 6012342 -276181322 - AluSx SINE Alu -1 311 1 4994 126 15 11 chr1 6012395 6012813 -276180851 + L1PA15 LINE L1 5355 5779 -386 2613 64 0 3 chr1 6012813 6013124 -276180540 + AluY SINE Alu 1 310 -1 4994 126 15 11 chr1 6013124 6013512 -276180152 + L1PA15 LINE L1 5779 6164 -1 2387 106 6 0 chr1 6013538 6013849 -276179815 + AluSq SINE Alu 1 313 0 496 305 7 0 chr1 6013849 6014003 -276179661 - L2 LINE L2 -952 2362 2208 260 244 0 61 chr1 6014079 6014161 -276179503 - MIR SINE MIR -104 158 82 255 229 9 29 chr1 6015043 6015148 -276178516 + CT-rich Low_complexity Low_complexity 6 108 0 219 69 0 0 chr1 6016510 6016539 -276177125 + (CA)n Simple_repeat Simple_repeat 1 29 0 232 288 100 75 chr1 6016600 6016760 -276176904 + L3 LINE CR1 1335 1498 -79 1309 224 101 0 chr1 6017428 6017776 -276175888 + MLT1B LTR MaLR 1 383 -7 1246 232 46 41 chr1 6019278 6019717 -276173947 + MLT1C LTR MaLR 11 451 -16 385 293 69 43 chr1 6020882 6021070 -276172594 - MIR3 SINE MIR -3 205 13 684 271 74 29 chr1 6021871 6022211 -276171453 + L1ME LINE L1 4982 5363 -801 2347 70 3 17 chr1 6022211 6022513 -276171151 + AluY SINE Alu 1 298 -13 684 271 74 29 chr1 6022513 6022772 -276170892 + L1ME LINE L1 5363 5609 -555 668 278 66 8 chr1 6022791 6023037 -276170627 + MLT1H1 LTR MaLR 1 242 -288 249 132 0 0 chr1 6023181 6023219 -276170445 + MLT1C LTR MaLR 558 595 0 568 326 25 18 chr1 6023231 6023507 -276170157 + L1ME3A LINE L1 5670 5947 -223 198 298 38 51 chr1 6024495 6024653 -276169011 + MIR3 SINE MIR 47 202 -6 380 297 8 17 chr1 6025161 6025279 -276168385 + MIR SINE MIR 106 222 -40 303 321 47 0 chr1 6026376 6026482 -276167182 + L2 LINE L2 3156 3266 -6 564 101 0 0 chr1 6026490 6026579 -276167085 + (TGGA)n Simple_repeat Simple_repeat 4 92 0 270 153 0 0 chr1 6026666 6026725 -276166939 + GA-rich Low_complexity Low_complexity 4 62 0 1185 206 5 5 chr1 6027017 6027235 -276166429 + MER58A DNA MER1_type 7 224 0 2167 131 20 3 chr1 6027365 6027670 -276165994 + AluSx SINE Alu 1 310 -2 248 204 273 18 chr1 6027739 6027864 -276165800 + MIR3 SINE MIR 5 153 -64 270 250 15 0 chr1 6027864 6027932 -276165732 + L2 LINE L2 3016 3084 -229 590 203 8 8 chr1 6027948 6028076 -276165588 - L1MB8 LINE L1 0 6178 6051 1778 139 186 6 chr1 6028102 6028462 -276165202 + MSTA LTR MaLR 4 428 0 347 237 0 0 chr1 6028462 6028538 -276165126 - L1MB3 LINE L1 -19 6164 6089 457 306 111 5 chr1 6028544 6028760 -276164904 + L2 LINE L2 3075 3313 0 252 167 19 0 chr1 6029142 6029196 -276164468 - MLT2C2 LTR ERVL 0 520 466 285 139 28 14 chr1 6029209 6029281 -276164383 + (TA)n Simple_repeat Simple_repeat 1 73 0 1392 177 28 32 chr1 6029281 6029563 -276164101 - MLT2C2 LTR ERVL -35 429 149 982 164 6 17 chr1 6029763 6029940 -276163724 - MLT2D LTR ERVL -239 175 1 213 65 0 0 chr1 6032091 6032122 -276161542 + (C)n Simple_repeat Simple_repeat 1 31 0 180 125 0 0 chr1 6034418 6034450 -276159214 + (TG)n Simple_repeat Simple_repeat 1 32 0 332 231 194 22 chr1 6035640 6035774 -276157890 + Charlie1 DNA MER1_type 82 238 -2523 * 494 148 8 141 chr1 6035771 6035899 -276157765 + Charlie1 DNA MER1_type 2631 2741 -20 189 0 0 0 chr1 6036002 6036023 -276157641 + (TTTTG)n Simple_repeat Simple_repeat 2 22 0 1961 102 15 0 chr1 6036028 6036302 -276157362 - AluSq SINE Alu -35 278 1 22 35 0 0 chr1 6037886 6037915 -276155749 + AT_rich Low_complexity Low_complexity 1 29 0 659 260 78 70 chr1 6038253 6038737 -276154927 + L1MEd LINE L1 700 1179 -5131 1455 168 29 19 chr1 6038737 6039046 -276154618 - AluJb SINE Alu 0 312 1 659 260 78 70 chr1 6039046 6039520 -276154144 + L1MEd LINE L1 1179 1697 -4613 1182 254 126 36 chr1 6039553 6039829 -276153835 + L2 LINE L2 1541 1791 -1523 2291 50 40 10 chr1 6039829 6040127 -276153537 - AluY SINE Alu -4 307 1 1182 254 126 36 chr1 6040127 6040436 -276153228 + L2 LINE L2 1791 2179 -1135 2116 187 52 16 chr1 6040439 6040883 -276152781 - MLT1C LTR MaLR 0 467 8 211 284 40 0 chr1 6040883 6040957 -276152707 + L2 LINE L2 2196 2272 -1042 480 179 42 0 chr1 6041008 6041103 -276152561 + MER69 DNA AcHobo 2424 2522 -4 1986 127 0 0 chr1 6041103 6041416 -276152248 + AluSx SINE Alu 1 313 0 870 269 146 25 chr1 6041433 6042177 -276151487 + L2 LINE L2 2250 3313 0 1643 71 5 0 chr1 6042439 6042651 -276151013 - AluSg/x SINE Alu -14 296 84 733 261 159 46 chr1 6042774 6043383 -276150281 + L1MEd LINE L1 2093 2770 -3359 475 277 8 23 chr1 6043424 6043554 -276150110 - L2 LINE L2 -1 3312 3185 959 124 0 20 chr1 6043601 6043754 -276149910 + AluSg/x SINE Alu 163 312 0 505 277 8 0 chr1 6043817 6043936 -276149728 - L2 LINE L2 -239 3074 2955 382 238 54 30 chr1 6043957 6044125 -276149539 + L1MEd LINE L1 2828 2999 -3130 294 163 58 12 chr1 6044245 6044331 -276149333 + GA-rich Low_complexity Low_complexity 2 91 0 711 270 34 6 chr1 6044335 6044661 -276149003 + L1MEd LINE L1 3100 3434 -2695 313 170 0 0 chr1 6044658 6044711 -276148953 - L1ME LINE L1 -600 5566 5514 * 850 204 64 0 chr1 6044755 6044927 -276148737 + MER58A DNA MER1_type 42 224 0 1046 287 51 29 chr1 6045007 6045418 -276148246 + HERV16 LTR ERVL 422 841 -4155 1369 276 71 19 chr1 6045546 6046013 -276147651 + HERV16 LTR ERVL 1011 1501 -3495 2471 281 77 41 chr1 6046018 6046948 -276146716 + HERV16 LTR ERVL 1661 2624 -2372 1393 261 19 44 chr1 6046953 6047473 -276146191 + L1MEd LINE L1 3932 4438 -1691 360 255 51 20 chr1 6047479 6047577 -276146087 + L2 LINE L2 3199 3299 -14 186 43 0 0 chr1 6047578 6047601 -276146063 + (TGAA)n Simple_repeat Simple_repeat 1 23 0 2497 111 98 0 chr1 6047643 6048031 -276145633 - MSTA LTR MaLR -2 426 1 216 246 0 88 chr1 6048156 6048213 -276145451 + L2 LINE L2 3136 3187 -85 385 224 12 12 chr1 6048388 6048473 -276145191 - L2 LINE L2 -1 3312 3228 229 189 57 0 chr1 6049452 6049505 -276144159 - Charlie2 DNA MER1_type -27 2835 2780 645 236 118 0 chr1 6049759 6049920 -276143744 - MIR SINE MIR -21 241 62 285 304 82 86 chr1 6050386 6050629 -276143035 + L2 LINE L2 2995 3236 -36 306 305 0 0 chr1 6050743 6050825 -276142839 - MIR SINE MIR -3 259 178 1321 211 85 58 chr1 6050841 6051014 -276142650 + MLT1C LTR MaLR 11 178 -289 2302 133 5 29 chr1 6051014 6051398 -276142266 + THE1C LTR MaLR 1 375 0 1321 211 85 58 chr1 6051398 6051669 -276141995 + MLT1C LTR MaLR 178 467 0 219 345 43 9 chr1 6051704 6051820 -276141844 - MIR3 SINE MIR -85 123 4 217 369 71 20 chr1 6053020 6053218 -276140446 + L3 LINE CR1 1250 1457 -120 9292 228 98 30 chr1 6055361 6056231 -276137433 + L1ME1 LINE L1 384 1193 -4907 1906 134 0 0 chr1 6056231 6056506 -276137158 + AluSx SINE Alu 1 275 -37 1106 65 18 12 chr1 6056512 6056682 -276136982 + (GAAA)n Simple_repeat Simple_repeat 2 172 0 9292 228 98 30 chr1 6056682 6056726 -276136938 + L1ME1 LINE L1 1197 1237 -4863 1136 231 5 0 chr1 6056726 6056947 -276136717 + MER58A DNA MER1_type 1 222 -2 9292 228 98 30 chr1 6056947 6057663 -276136001 + L1ME1 LINE L1 1237 1903 -4197 2615 35 0 0 chr1 6057663 6057974 -276135690 + AluYa5 SINE Alu 1 311 0 9292 228 98 30 chr1 6057974 6060178 -276133486 + L1ME1 LINE L1 1903 4689 -1411 1427 194 113 7 chr1 6060178 6060487 -276133177 + MER2 DNA MER2_type 3 344 0 9292 228 98 30 chr1 6060487 6061836 -276131828 + L1ME1 LINE L1 4689 5944 -156 507 304 84 49 chr1 6061896 6062989 -276130675 + L1MC/D LINE L1 4636 5802 -803 1498 214 9 24 chr1 6063019 6063355 -276130309 - L1MB4 LINE L1 -9 6171 5841 633 276 190 6 chr1 6063363 6063689 -276129975 + L2 LINE L2 2927 3312 -1 661 281 17 22 chr1 6064100 6064278 -276129386 - MIR SINE MIR -1 261 85 2279 84 0 3 chr1 6066570 6066867 -276126797 - AluSq SINE Alu -17 296 1 492 227 0 25 chr1 6067287 6067425 -276126239 + MER69A DNA AcHobo 1 135 -42 374 250 33 0 chr1 6068154 6068246 -276125418 - MIR SINE MIR -78 130 36 228 276 121 0 chr1 6068503 6068561 -276125103 + L2 LINE L2 3206 3270 -2 484 332 101 29 chr1 6069328 6069714 -276123950 + L1MEc LINE L1 42 455 -5941 1516 297 109 18 chr1 6070233 6070846 -276122818 + L2 LINE L2 1955 2623 -691 669 236 18 48 chr1 6070885 6071050 -276122614 + MIR SINE MIR 12 171 -91 1172 242 118 25 chr1 6071097 6071452 -276122212 + MLT1E LTR MaLR 206 593 0 371 315 163 0 chr1 6071452 6071630 -276122034 + L2 LINE L2 3107 3313 0 229 252 63 63 chr1 6071763 6071874 -276121790 - L2 LINE L2 -20 3293 3183 502 290 98 27 chr1 6071995 6072219 -276121445 - MIR SINE MIR -17 245 6 24 0 0 0 chr1 6075092 6075116 -276118548 + AT_rich Low_complexity Low_complexity 1 24 0 214 215 215 11 chr1 6075784 6075877 -276117787 - MIR SINE MIR -37 225 114 423 244 21 20 chr1 6076248 6076374 -276117290 + MIR SINE MIR 20 147 -61 208 200 22 0 chr1 6076530 6076575 -276117089 + (TAA)n Simple_repeat Simple_repeat 1 46 0 620 231 6 27 chr1 6077166 6077328 -276116336 - MLT1C LTR MaLR 0 603 330 1215 207 78 51 chr1 6077344 6077716 -276115948 - MLT1C LTR MaLR -80 387 6 205 133 0 0 chr1 6077760 6077790 -276115874 - MIR SINE MIR -63 145 116 2693 118 70 0 chr1 6077997 6078395 -276115269 + MSTA LTR MaLR 1 426 -2 500 324 88 6 chr1 6079056 6079226 -276114438 + MIR SINE MIR 17 200 -62 1367 179 135 39 chr1 6079231 6079638 -276114026 + MLT1J2 LTR MaLR 5 450 0 411 244 22 0 chr1 6080395 6080485 -276113179 - MIR SINE MIR -114 148 57 250 337 47 0 chr1 6081130 6081216 -276112448 + L2 LINE L2 3153 3242 -30 189 306 53 0 chr1 6082448 6082567 -276111097 - L2 LINE L2 -289 3024 2893 2286 92 0 0 chr1 6082762 6083082 -276110582 + AluSg SINE Alu 3 322 0 334 0 0 0 chr1 6083045 6083135 -276110529 + (TAA)n Simple_repeat Simple_repeat 1 90 0 189 342 67 58 chr1 6083447 6083894 -276109770 - L2 LINE L2 -714 2600 2150 452 259 17 0 chr1 6084198 6084314 -276109350 - L1ME LINE L1 -337 5784 5667 272 318 62 34 chr1 6084637 6084816 -276108848 - L2 LINE L2 -1235 2079 1896 203 302 32 0 chr1 6085177 6085240 -276108424 + MIR3 SINE MIR 121 185 -23 411 21 0 0 chr1 6085414 6085462 -276108202 + (CA)n Simple_repeat Simple_repeat 1 48 0 351 307 126 36 chr1 6088142 6088562 -276105102 + L2 LINE L2 2855 3312 -1 326 206 93 10 chr1 6088636 6088733 -276104931 + MIR SINE MIR 36 140 -122 289 310 28 35 chr1 6089072 6089214 -276104450 + L1ME LINE L1 5523 5663 -458 192 154 0 26 chr1 6089230 6089269 -276104395 + L2 LINE L2 3266 3303 -10 226 315 43 0 chr1 6089289 6089381 -276104283 + L1ME LINE L1 5688 5783 -338 324 0 0 0 chr1 6089769 6089805 -276103859 + (CA)n Simple_repeat Simple_repeat 2 37 0 8452 228 54 32 chr1 6089903 6090655 -276103009 - L1MCa LINE L1 -1364 4851 4117 2258 106 0 7 chr1 6090655 6090957 -276102707 + AluSc SINE Alu 3 302 -7 234 0 0 0 chr1 6090957 6090983 -276102681 + (TA)n Simple_repeat Simple_repeat 2 27 0 8452 228 54 32 chr1 6090983 6092086 -276101578 - L1MCa LINE L1 -2098 4117 3039 2303 111 0 16 chr1 6092086 6092402 -276101262 - AluSx SINE Alu -1 311 1 8452 228 54 32 chr1 6092402 6093513 -276100151 - L1MCa LINE L1 -3176 3039 1841 4167 177 62 17 chr1 6093500 6094374 -276099290 - L1MB7 LINE L1 -1 6183 5271 * 3200 199 11 48 chr1 6094388 6095188 -276098476 - L1MB7 LINE L1 -1055 5091 4321 1015 241 113 3 chr1 6095186 6095559 -276098105 - L1MB7 LINE L1 -2521 3625 3212 * 441 0 0 0 chr1 6095647 6095696 -276097968 + (TCTA)n Simple_repeat Simple_repeat 2 50 0 412 242 15 0 chr1 6095698 6095830 -276097834 - L1MB7 LINE L1 -2892 3254 3121 1275 239 28 63 chr1 6095838 6096235 -276097429 - MLT1B LTR MaLR -7 383 1 333 232 71 0 chr1 6096249 6096361 -276097303 - L1MB7 LINE L1 -3036 3110 2991 497 219 6 84 chr1 6096366 6096439 -276097225 - L1MCa LINE L1 -4533 1863 1786 591 260 0 0 chr1 6096439 6096562 -276097102 - FLAM_A SINE Alu -10 123 1 497 219 6 84 chr1 6096562 6096666 -276096998 - L1MCa LINE L1 -4610 1786 1700 2407 95 0 3 chr1 6096666 6096970 -276096694 + AluSq SINE Alu 1 303 -10 462 204 0 0 chr1 6096972 6097070 -276096594 + (TATG)n Simple_repeat Simple_repeat 3 100 0 733 266 139 33 chr1 6097096 6097678 -276095986 - L1MCa LINE L1 -4656 1561 876 2188 243 52 19 chr1 6097678 6098249 -276095415 + MLT1E LTR MaLR 1 590 -3 1009 312 46 15 chr1 6098258 6098803 -276094861 - L1MCa LINE L1 -5331 1065 504 804 288 58 53 chr1 6098827 6099313 -276094351 - L1MCa LINE L1 -5866 530 43 395 301 66 0 chr1 6100662 6100798 -276092866 + L2 LINE L2 3169 3313 0 855 163 141 105 chr1 6101478 6101648 -276092016 - MER33 DNA MER1_type -2261 324 137 2178 123 0 23 chr1 6101648 6101957 -276091707 + AluSx SINE Alu 1 302 -10 855 163 141 105 chr1 6101957 6102099 -276091565 - MER33 DNA MER1_type -2448 137 1 407 183 19 10 chr1 6102974 6103078 -276090586 + MER5A DNA MER1_type 11 115 -74 2311 89 0 0 chr1 6104691 6104982 -276088682 - AluSq SINE Alu -22 291 1 1181 163 20 0 chr1 6107051 6107247 -276086417 + MER58A DNA MER1_type 1 200 -24 278 276 26 60 chr1 6107275 6107391 -276086273 - L2 LINE L2 -1 3312 3201 194 351 106 61 chr1 6107391 6107684 -276085980 + L3b LINE CR1 1183 1488 -95 367 285 181 0 chr1 6107740 6107884 -276085780 - MER5A DNA MER1_type -6 183 14 551 187 179 0 chr1 6109451 6109585 -276084079 - MER53 DNA DNA 0 189 32 222 232 36 0 chr1 6109950 6110006 -276083658 + MIR SINE MIR 136 193 -69 1108 197 4 56 chr1 6110131 6110380 -276083284 + MLT1A1 LTR MaLR 10 245 -120 906 170 13 0 chr1 6110449 6110602 -276083062 + MLT1A1 LTR MaLR 211 365 0 2535 52 7 3 chr1 6110677 6110984 -276082680 - AluY SINE Alu -3 308 1 22 35 0 0 chr1 6111025 6111054 -276082610 + AT_rich Low_complexity Low_complexity 1 29 0 28 29 0 0 chr1 6111927 6111962 -276081702 + AT_rich Low_complexity Low_complexity 1 35 0 1914 90 0 11 chr1 6111962 6112230 -276081434 - L1PA7 LINE L1 -3 6151 5887 546 262 37 21 chr1 6113493 6113680 -276079984 + MIR SINE MIR 11 200 -62 459 269 200 28 chr1 6114907 6115339 -276078325 + L1ME2 LINE L1 5367 5885 -279 258 136 0 0 chr1 6115364 6115408 -276078256 + (CA)n Simple_repeat Simple_repeat 1 44 0 205 281 123 18 chr1 6115563 6115677 -276077987 + L2 LINE L2 3181 3306 -7 1863 112 34 4 chr1 6120323 6120591 -276073073 + AluSq SINE Alu 30 305 -8 256 159 0 0 chr1 6120976 6121020 -276072644 - MIR SINE MIR -78 184 141 639 254 25 99 chr1 6121151 6121505 -276072159 + LTR16C LTR ERVL 163 490 -1 21 0 0 0 chr1 6121913 6121934 -276071730 + AT_rich Low_complexity Low_complexity 1 21 0 221 30 61 0 chr1 6122001 6122034 -276071630 + (TATG)n Simple_repeat Simple_repeat 4 38 0 238 160 0 20 chr1 6122036 6122086 -276071578 + LTR66 LTR ERVL 394 442 -168 4083 89 6 18 chr1 6122144 6122356 -276071308 + L1P LINE L1 4380 4593 -1553 7777 29 0 0 chr1 6122356 6123450 -276070214 - L1PA4 LINE L1 0 6155 5063 4083 89 6 18 chr1 6123450 6123939 -276069725 + L1PA4 LINE L1 4593 5058 -1088 357 330 40 60 chr1 6123929 6124270 -276069394 + L1M4 LINE L1 4564 4891 -1255 * 2430 81 13 0 chr1 6124270 6124451 -276069213 - AluY SINE Alu 0 311 123 351 0 0 0 chr1 6124451 6124490 -276069174 + (TTTA)n Simple_repeat Simple_repeat 2 40 0 2430 81 13 0 chr1 6124490 6124615 -276069049 - AluY SINE Alu -188 123 1 357 330 40 60 chr1 6124615 6124843 -276068821 + L1M4 LINE L1 4891 5122 -1024 5556 181 55 32 chr1 6124881 6126423 -276067241 - L1M4 LINE L1 -590 5588 4020 1810 150 56 7 chr1 6126456 6126743 -276066921 + AluSx SINE Alu 1 301 -11 2871 197 24 100 chr1 6126743 6127179 -276066485 + L1MC5 LINE L1 6859 7327 -634 2189 127 61 58 chr1 6127179 6127574 -276066090 + MSTD LTR MaLR 1 396 0 2871 197 24 100 chr1 6127574 6128188 -276065476 + L1MC5 LINE L1 7327 7829 -132 188 321 46 30 chr1 6128263 6128365 -276065299 + L2 LINE L2 3136 3242 -30 2222 115 3 0 chr1 6128365 6128660 -276065004 - AluSx SINE Alu -16 296 1 188 321 46 30 chr1 6128660 6128688 -276064976 + L2 LINE L2 3242 3268 -4 550 251 84 11 chr1 6128794 6128985 -276064679 - MIR SINE MIR -44 218 14 267 244 0 26 chr1 6129121 6129199 -276064465 + L1MC5 LINE L1 7840 7915 -46 285 290 30 60 chr1 6129220 6129320 -276064344 + MIR SINE MIR 20 116 -146 464 303 27 11 chr1 6130536 6130724 -276062940 - MIR SINE MIR -12 250 60 1984 130 7 7 chr1 6131618 6131917 -276061747 - AluSx SINE Alu -13 299 1 187 219 0 96 chr1 6131944 6132017 -276061647 - MIR SINE MIR -35 227 162 2178 131 0 0 chr1 6132175 6132473 -276061191 + AluSx SINE Alu 1 298 -14 222 328 168 42 chr1 6132688 6132807 -276060857 - L2 LINE L2 -4 3309 3176 253 289 58 19 chr1 6133391 6133495 -276060169 - L2 LINE L2 -232 3040 2933 * 291 273 106 15 chr1 6133491 6133623 -276060041 - L2 LINE L2 -491 2823 2680 383 207 97 48 chr1 6134606 6134751 -276058913 - L2 LINE L2 -10 3303 3152 194 228 152 33 chr1 6135404 6135496 -276058168 - MIR SINE MIR -71 191 89 2011 121 7 17 chr1 6135589 6135887 -276057777 + AluSx SINE Alu 1 295 -17 207 0 0 0 chr1 6135888 6135911 -276057753 + (TC)n Simple_repeat Simple_repeat 1 23 0 * 216 0 0 0 chr1 6135910 6135934 -276057730 + (CA)n Simple_repeat Simple_repeat 1 24 0 194 191 21 0 chr1 6137602 6137649 -276056015 + CT-rich Low_complexity Low_complexity 3 50 0 477 188 0 43 chr1 6137653 6137839 -276055825 + C-rich Low_complexity Low_complexity 3 180 0 450 64 0 64 chr1 6138863 6138941 -276054723 - Alu SINE Alu -236 73 1 2158 106 0 6 chr1 6139633 6139944 -276053720 + AluSp SINE Alu 1 309 -4 2331 75 0 3 chr1 6140129 6140435 -276053229 + AluY SINE Alu 1 305 -6 324 259 101 84 chr1 6140456 6140803 -276052861 + L1ME4a LINE L1 5768 6120 -1 2212 82 3 3 chr1 6141878 6142170 -276051494 + AluY SINE Alu 1 292 -19 208 167 19 37 chr1 6143754 6143808 -276049856 + L2 LINE L2 3026 3078 -194 402 187 0 0 chr1 6143853 6143944 -276049720 + (CA)n Simple_repeat Simple_repeat 1 91 0 202 289 228 35 chr1 6143954 6144068 -276049596 + L2 LINE L2 3136 3271 -1 261 57 0 0 chr1 6144080 6144115 -276049549 + (TGGG)n Simple_repeat Simple_repeat 2 36 0 253 330 136 11 chr1 6144308 6144484 -276049180 - MIR SINE MIR -32 230 33 372 43 0 0 chr1 6145312 6145358 -276048306 + (TG)n Simple_repeat Simple_repeat 1 46 0 329 314 107 6 chr1 6145459 6145618 -276048046 - MIR SINE MIR -66 196 22 247 299 26 17 chr1 6145717 6145834 -276047830 + MER103 DNA DNA 1 118 -48 182 37 37 0 chr1 6145955 6145982 -276047682 + (TGAA)n Simple_repeat Simple_repeat 1 28 0 183 296 19 0 chr1 6147024 6147078 -276046586 - L2 LINE L2 0 3272 3218 1756 182 34 58 chr1 6147160 6147373 -276046291 - MLT1A2 LTR MaLR -2 372 170 860 148 0 15 chr1 6147373 6147508 -276046156 - FLAM_C SINE Alu 0 133 1 1756 182 34 58 chr1 6147508 6147673 -276045991 - MLT1A2 LTR MaLR -204 170 3 270 0 0 0 chr1 6147689 6147719 -276045945 + (T)n Simple_repeat Simple_repeat 1 30 0 1055 133 6 12 chr1 6147737 6147902 -276045762 - U1 snRNA snRNA -1 164 1 625 313 72 23 chr1 6149747 6149852 -276043812 + L1MD1 LINE L1 2147 2245 -3901 2419 115 33 8 chr1 6149852 6150218 -276043446 - THE1C LTR MaLR 0 375 1 625 313 72 23 chr1 6150218 6150416 -276043248 + L1MD1 LINE L1 2245 2465 -3681 1512 167 31 0 chr1 6150459 6150717 -276042947 + AluSx SINE Alu 1 266 -46 269 118 20 0 chr1 6150723 6150774 -276042890 + GA-rich Low_complexity Low_complexity 1 52 0 2250 133 123 5 chr1 6150920 6151303 -276042361 + MSTA LTR MaLR 1 428 0 344 299 58 7 chr1 6151356 6151493 -276042171 + L1MD1 LINE L1 2680 2823 -3323 486 220 112 100 chr1 6151509 6151573 -276042091 + L1MD1 LINE L1 2903 2965 -3181 2217 101 0 0 chr1 6151573 6151871 -276041793 + AluSx SINE Alu 6 303 -9 486 220 112 100 chr1 6151871 6152056 -276041608 + L1MD1 LINE L1 2965 3155 -2991 5277 192 35 36 chr1 6152178 6152596 -276041068 + L1MD1 LINE L1 4735 5152 -1090 2079 131 0 0 chr1 6152596 6152901 -276040763 + AluY SINE Alu 1 305 -6 5277 192 35 36 chr1 6152901 6152914 -276040750 + L1MD1 LINE L1 5152 5164 -1078 6318 35 0 0 chr1 6152914 6153653 -276040011 + L1PA4 LINE L1 5416 6154 -1 5277 192 35 36 chr1 6153653 6154737 -276038927 + L1MD1 LINE L1 5164 6242 0 2283 220 106 82 chr1 6154725 6155678 -276037986 + L1MC4a LINE L1 5870 6845 -963 * 1271 237 12 36 chr1 6155677 6156010 -276037654 + L1ME2 LINE L1 5821 6145 -19 * 372 317 32 68 chr1 6156058 6156279 -276037385 + L1MC4 LINE L1 7829 8041 -1 4398 191 48 66 chr1 6156288 6157450 -276036214 + L1MC4 LINE L1 6914 7995 0 186 187 55 143 chr1 6158746 6158837 -276034827 - L2 LINE L2 -91 3222 3140 203 268 18 0 chr1 6158957 6159013 -276034651 + (CAAA)n Simple_repeat Simple_repeat 1 57 0 275 273 50 72 chr1 6159978 6160117 -276033547 + L2 LINE L2 3127 3262 -10 349 292 42 14 chr1 6160437 6160581 -276033083 + L1ME2 LINE L1 5443 5590 -574 500 234 45 7 chr1 6160584 6160738 -276032926 + L1ME2 LINE L1 5727 5886 -284 1023 281 93 24 chr1 6160816 6161578 -276032086 + L1M4 LINE L1 4369 5183 -963 * 11125 208 45 29 chr1 6161572 6161859 -276031805 + L1MB7 LINE L1 2237 2518 -3666 1826 131 18 0 chr1 6161859 6162133 -276031531 + AluSq SINE Alu 1 279 -34 2365 77 3 3 chr1 6162133 6162444 -276031220 + AluY SINE Alu 1 311 0 11125 208 45 29 chr1 6162444 6162467 -276031197 + L1MB7 LINE L1 2518 2539 -3645 237 65 0 0 chr1 6162467 6162498 -276031166 + (TAA)n Simple_repeat Simple_repeat 2 32 0 11125 208 45 29 chr1 6162498 6163124 -276030540 + L1MB7 LINE L1 2539 3154 -3030 2402 56 0 28 chr1 6163124 6163444 -276030220 + AluY SINE Alu 1 311 0 11125 208 45 29 chr1 6163444 6166386 -276027278 + L1MB7 LINE L1 3154 6183 -1 2673 168 61 99 chr1 6166391 6167225 -276026439 + L1MC4 LINE L1 7241 8042 0 244 174 0 212 chr1 6167235 6167367 -276026297 + L1ME2 LINE L1 5894 5997 -167 421 300 43 43 chr1 6168124 6168354 -276025310 - L2 LINE L2 -1 3312 3083 397 298 55 38 chr1 6168478 6168713 -276024951 - L2 LINE L2 -257 3056 2818 300 268 115 38 chr1 6169425 6169582 -276024082 + MIR SINE MIR 47 215 -47 450 0 0 0 chr1 6169583 6169633 -276024031 + (TG)n Simple_repeat Simple_repeat 1 50 0 1675 136 213 28 chr1 6170866 6171227 -276022437 - MSTA LTR MaLR 0 428 1 2128 105 7 0 chr1 6171231 6171525 -276022139 - AluSx SINE Alu -16 296 1 428 325 54 30 chr1 6171757 6172052 -276021612 - MLT1I LTR MaLR -66 343 42 23 33 0 0 chr1 6172839 6172869 -276020795 + AT_rich Low_complexity Low_complexity 1 30 0 2127 91 3 7 chr1 6173895 6174193 -276019471 - AluSx SINE Alu -15 297 1 324 289 132 0 chr1 6174454 6174568 -276019096 + MIR SINE MIR 47 175 -87 296 218 158 45 chr1 6175248 6175381 -276018283 - MIR3 SINE MIR -28 180 33 479 264 104 12 chr1 6176332 6176495 -276017169 + MIR SINE MIR 70 247 -15 235 258 10 31 chr1 6176831 6176928 -276016736 + (CATATA)n Simple_repeat Simple_repeat 1 95 0 6185 98 10 9 chr1 6176972 6177866 -276015798 - L1PB1 LINE L1 -1 6150 5256 525 245 31 33 chr1 6177889 6178114 -276015550 - L1MC4a LINE L1 -224 5897 5670 3733 183 24 6 chr1 6178241 6178964 -276014700 + L1MB3 LINE L1 5441 6176 -7 2122 111 54 40 chr1 6178997 6179367 -276014297 + THE1C LTR MaLR 1 375 0 23 33 0 0 chr1 6179639 6179669 -276013995 + AT_rich Low_complexity Low_complexity 1 30 0 234 207 103 0 chr1 6179970 6180028 -276013636 - MER5C DNA MER1_type -234 90 27 211 192 77 19 chr1 6180498 6180550 -276013114 + L2 LINE L2 3259 3313 0 262 230 81 14 chr1 6180647 6180721 -276012943 - MIR SINE MIR -107 101 23 220 271 84 19 chr1 6180835 6180942 -276012722 - MIR SINE MIR -6 256 143 2386 167 119 101 chr1 6180944 6181723 -276011941 - L1MD3 LINE L1 0 8042 7262 2462 231 85 37 chr1 6181781 6182734 -276010930 - L1MC4a LINE L1 -885 6923 5925 3827 95 39 0 chr1 6182742 6183308 -276010356 - L1MA2 LINE L1 0 6304 5717 326 264 181 19 chr1 6183374 6183529 -276010135 - L1ME1 LINE L1 -5 6161 5982 2193 232 83 36 chr1 6183532 6183862 -276009802 - L1MC4a LINE L1 -743 5403 5500 2067 174 76 2 chr1 6183862 6184259 -276009405 + MSTB LTR MaLR 1 426 0 2193 232 83 36 chr1 6184259 6184745 -276008919 - L1MC4a LINE L1 -645 5501 5039 1029 184 192 16 chr1 6184748 6185003 -276008661 - AluY SINE Alu -11 300 1 2551 304 87 25 chr1 6185004 6186450 -276007214 - L1MC4a LINE L1 -1102 5044 3690 1700 177 20 0 chr1 6186450 6186750 -276006914 + AluJb SINE Alu 1 306 -6 2551 304 87 25 chr1 6186750 6186891 -276006773 - L1MC4a LINE L1 -2456 3690 3559 2027 108 31 0 chr1 6186891 6187177 -276006487 - AluSq SINE Alu -18 295 1 2551 304 87 25 chr1 6187177 6188047 -276005617 - L1MC4a LINE L1 -2587 3559 2432 657 222 13 20 chr1 6190283 6190436 -276003228 + MLT1J2 LTR MaLR 36 187 -263 261 83 0 0 chr1 6192182 6192218 -276001446 + (CA)n Simple_repeat Simple_repeat 2 37 0 23 0 0 0 chr1 6193545 6193568 -276000096 + AT_rich Low_complexity Low_complexity 1 23 0 1982 129 3 3 chr1 6193574 6193868 -275999796 + AluSp SINE Alu 1 294 -19 2118 105 10 0 chr1 6194812 6195108 -275998556 + AluSq SINE Alu 1 299 -14 2089 201 23 12 chr1 6195227 6195659 -275998005 + L1MB5 LINE L1 5732 6168 -6 217 272 99 25 chr1 6195739 6195820 -275997844 - L2 LINE L2 -5 3308 3222 213 160 67 143 chr1 6195827 6195946 -275997718 - L2 LINE L2 -237 3035 2926 1642 250 117 101 chr1 6196170 6196518 -275997146 + L1MB8 LINE L1 2507 2848 -3316 3543 60 2 0 chr1 6196518 6196964 -275996700 + L1PA8 LINE L1 5726 6172 0 1642 250 117 101 chr1 6196964 6197435 -275996229 + L1MB8 LINE L1 2848 3310 -2854 1677 131 16 74 chr1 6197435 6197747 -275995917 + AluSx SINE Alu 1 294 -18 1642 250 117 101 chr1 6197747 6198559 -275995105 + L1MB8 LINE L1 3310 4108 -2056 2073 109 0 3 chr1 6198559 6198867 -275994797 + AluSx SINE Alu 2 308 0 1642 250 117 101 chr1 6198867 6199226 -275994438 + L1MB8 LINE L1 4108 4460 -1704 1705 152 46 7 chr1 6199226 6199498 -275994166 + AluJo SINE Alu 1 286 -26 246 62 0 0 chr1 6199498 6199530 -275994134 + (TTAA)n Simple_repeat Simple_repeat 3 34 0 1642 250 117 101 chr1 6199540 6200153 -275993511 + L1MB8 LINE L1 4460 5161 -1003 2125 110 0 10 chr1 6200153 6200453 -275993211 + AluSx SINE Alu 3 299 -13 1642 250 117 101 chr1 6200453 6200730 -275992934 + L1MB8 LINE L1 5161 5432 -732 292 301 77 42 chr1 6200738 6200881 -275992783 + L1M1 LINE L1 5500 5647 -658 2333 72 0 0 chr1 6200896 6201188 -275992476 + AluY SINE Alu 1 292 -19 2117 122 0 0 chr1 6201530 6201834 -275991830 + AluSx SINE Alu 1 304 -8 325 302 71 39 chr1 6203233 6203415 -275990249 - L2 LINE L2 -2 3311 3124 730 331 131 21 chr1 6203426 6204199 -275989465 + L2 LINE L2 187 1044 -2270 200 234 94 0 chr1 6204240 6204304 -275989360 + L2 LINE L2 2627 2696 -618 2951 210 19 26 chr1 6204335 6204960 -275988704 + L1MB8 LINE L1 5538 6158 -20 640 316 73 29 chr1 6204970 6205495 -275988169 + L2 LINE L2 2724 3284 -29 2212 130 41 36 chr1 6205495 6205857 -275987807 - THE1B LTR MaLR 0 364 1 640 316 73 29 chr1 6205857 6205888 -275987776 + L2 LINE L2 3284 3312 -1 632 333 134 19 chr1 6205894 6206880 -275986784 - L2 LINE L2 -216 3056 1895 1826 129 42 11 chr1 6207011 6207297 -275986367 - AluSq SINE Alu -18 295 1 210 211 0 0 chr1 6207309 6207347 -275986317 - MIR SINE MIR -14 248 211 1726 159 13 29 chr1 6207413 6207728 -275985936 + AluJo SINE Alu 1 310 -2 189 298 0 0 chr1 6208338 6208385 -275985279 - L3 LINE CR1 -1161 416 370 332 223 25 122 chr1 6208489 6208686 -275984978 - L1MC4 LINE L1 -1 8041 7864 2626 232 32 41 chr1 6208747 6209085 -275984579 - L1ME2 LINE L1 -10 6154 5814 2454 53 0 0 chr1 6209085 6209384 -275984280 - AluY SINE Alu -12 299 1 2626 232 32 41 chr1 6209384 6209795 -275983869 - L1ME2 LINE L1 -350 5814 5412 2362 74 0 6 chr1 6209888 6210200 -275983464 - AluY SINE Alu -1 310 1 393 338 17 79 chr1 6210758 6210964 -275982700 + L2 LINE L2 3000 3184 -88 1724 111 12 80 chr1 6210964 6211288 -275982376 - AluSq SINE Alu -8 305 4 393 338 17 79 chr1 6211288 6211371 -275982293 + L2 LINE L2 3184 3271 -1 1191 151 10 0 chr1 6211539 6211731 -275981933 + AluJb SINE Alu 9 202 -110 180 345 54 24 chr1 6213211 6213379 -275980285 - MIR3 SINE MIR -32 176 4 874 219 80 0 chr1 6216600 6216787 -275976877 + MER20 DNA MER1_type 1 202 -17 234 89 36 18 chr1 6218883 6218939 -275974725 + (TG)n Simple_repeat Simple_repeat 1 57 0 397 199 29 14 chr1 6218983 6219260 -275974404 + (TG)n Simple_repeat Simple_repeat 1 281 0 417 204 36 0 chr1 6219296 6219463 -275974201 + (TG)n Simple_repeat Simple_repeat 1 173 0 390 196 32 6 chr1 6219507 6219665 -275973999 + (TG)n Simple_repeat Simple_repeat 1 162 0 290 219 22 17 chr1 6219681 6219822 -275973842 + (TG)n Simple_repeat Simple_repeat 1 145 -34 2354 73 0 13 chr1 6219822 6220123 -275973541 - AluY SINE Alu -14 297 1 290 219 22 17 chr1 6220123 6220159 -275973505 + (TG)n Simple_repeat Simple_repeat 145 179 0 497 236 16 39 chr1 6220182 6220364 -275973300 + (TG)n Simple_repeat Simple_repeat 1 178 0 284 219 38 6 chr1 6220380 6220540 -275973124 + (TG)n Simple_repeat Simple_repeat 1 165 0 261 283 0 0 chr1 6221183 6221243 -275972421 + MIR SINE MIR 203 262 0 291 327 30 0 chr1 6221271 6221372 -275972292 - MIR SINE MIR -112 150 47 253 275 117 25 chr1 6222272 6222392 -275971272 + MIR SINE MIR 61 191 -71 1592 188 35 48 chr1 6222767 6222960 -275970704 + MLT1B LTR MaLR 7 194 -196 390 108 0 0 chr1 6222960 6223025 -275970639 + (CA)n Simple_repeat Simple_repeat 1 65 0 1592 188 35 48 chr1 6223025 6223204 -275970460 + MLT1B LTR MaLR 194 374 -16 2211 147 70 29 chr1 6224385 6224800 -275968864 - MSTB1 LTR MaLR 0 432 1 302 304 32 16 chr1 6225284 6225409 -275968255 + MIR3 SINE MIR 61 187 -21 218 262 0 0 chr1 6225549 6225591 -275968073 - MIR SINE MIR 0 262 221 184 326 0 0 chr1 6225559 6225605 -275968059 - L2 LINE L2 -16 3256 3211 * 24 0 0 0 chr1 6226501 6226525 -275967139 + AT_rich Low_complexity Low_complexity 1 24 0 692 242 86 90 chr1 6227048 6227304 -275966360 + MIR SINE MIR 3 257 -5 208 115 51 13 chr1 6227882 6227960 -275965704 + (TA)n Simple_repeat Simple_repeat 2 82 0 349 266 121 62 chr1 6227965 6228221 -275965443 + L1MC5 LINE L1 7572 7842 -119 208 135 0 0 chr1 6228223 6228260 -275965404 + (TA)n Simple_repeat Simple_repeat 2 38 0 2027 128 0 0 chr1 6228260 6228548 -275965116 - AluSx SINE Alu -23 289 2 551 323 138 14 chr1 6228952 6228970 -275964694 - L2 LINE L2 -4 3309 3295 1922 140 0 19 chr1 6228970 6229285 -275964379 + AluJo SINE Alu 1 309 -3 551 323 138 14 chr1 6229285 6229828 -275963836 - L2 LINE L2 -18 3295 1153 2847 286 149 18 chr1 6229957 6231320 -275962344 - L2 LINE L2 -685 2629 1089 352 228 22 0 chr1 6231324 6231416 -275962248 + MLT1J1 LTR MaLR 345 438 -8 947 263 13 52 chr1 6231429 6231737 -275961927 - L2 LINE L2 -2591 723 428 2095 141 10 10 chr1 6231737 6231844 -275961820 - L1P4 LINE L1 -573 5593 5488 2348 115 0 3 chr1 6231844 6232157 -275961507 - AluSq SINE Alu -1 312 1 2095 141 10 10 chr1 6232157 6232461 -275961203 - L1P4 LINE L1 -678 5488 5183 550 194 24 11 chr1 6232438 6232576 -275961088 - L1PA16 LINE L1 -445 5721 5623 * 2622 129 13 22 chr1 6232584 6232654 -275961010 + L1PA16 LINE L1 5711 5780 -386 1773 158 46 23 chr1 6232654 6232772 -275960892 + AluJb SINE Alu 1 115 -197 189 0 0 0 chr1 6232772 6232793 -275960871 + (TAA)n Simple_repeat Simple_repeat 2 22 0 1773 158 46 23 chr1 6232793 6232978 -275960686 + AluJb SINE Alu 115 311 -1 2622 129 13 22 chr1 6232978 6233356 -275960308 + L1PA16 LINE L1 5780 6155 -11 338 250 34 11 chr1 6233433 6233521 -275960143 - L2 LINE L2 -2877 437 348 448 222 98 39 chr1 6233566 6233719 -275959945 + L1ME1 LINE L1 19 180 -6216 * 2033 262 58 9 chr1 6233715 6234462 -275959202 + L1ME1 LINE L1 3248 4030 -2185 529 269 8 0 chr1 6234465 6234599 -275959065 + L1MD3 LINE L1 7797 7931 -64 528 188 0 0 chr1 6234601 6234697 -275958967 - AluJ/FLAM SINE Alu -215 97 2 1394 142 0 10 chr1 6234771 6234968 -275958696 + AluJo SINE Alu 85 279 -33 2432 236 34 73 chr1 6234996 6235179 -275958485 + L1ME1 LINE L1 4606 4795 -1440 285 29 0 0 chr1 6235179 6235213 -275958451 + (TG)n Simple_repeat Simple_repeat 2 35 0 2108 91 18 0 chr1 6235214 6235488 -275958176 - AluSx SINE Alu -33 279 1 2432 236 34 73 chr1 6235488 6236010 -275957654 + L1ME1 LINE L1 4795 5336 -899 2547 76 0 0 chr1 6236010 6236311 -275957353 + AluSc SINE Alu 1 301 -8 2432 236 34 73 chr1 6236311 6237023 -275956641 + L1ME1 LINE L1 5336 5944 -291 2097 131 0 7 chr1 6237023 6237306 -275956358 + AluSx SINE Alu 1 283 -29 324 0 0 0 chr1 6237306 6237342 -275956322 + (CA)n Simple_repeat Simple_repeat 1 36 0 2432 236 34 73 chr1 6237348 6237626 -275956038 + L1ME1 LINE L1 5944 6231 -4 307 228 0 87 chr1 6237642 6237734 -275955930 - MIR SINE MIR -101 161 78 208 250 190 50 chr1 6238024 6238124 -275955540 + MIR SINE MIR 35 148 -114 2227 128 10 0 chr1 6238124 6238430 -275955234 + AluSx SINE Alu 1 309 -3 1251 112 12 0 chr1 6238441 6238602 -275955062 + AluSg/x SINE Alu 133 295 -15 394 273 181 12 chr1 6238655 6238900 -275954764 + L2 LINE L2 2773 3060 -253 2434 184 32 31 chr1 6238900 6239423 -275954241 - MER68 LTR ERV1 -1 561 38 207 0 0 0 chr1 6239991 6240014 -275953650 + (A)n Simple_repeat Simple_repeat 1 23 0 2474 80 3 0 chr1 6240193 6240493 -275953171 + AluY SINE Alu 1 301 -10 1708 169 52 33 chr1 6241009 6241377 -275952287 + THE1C LTR MaLR 1 375 0 419 293 75 63 chr1 6241586 6241921 -275951743 + L2 LINE L2 2909 3247 -25 261 119 0 0 chr1 6241932 6241974 -275951690 + (TGAA)n Simple_repeat Simple_repeat 4 45 0 991 220 59 84 chr1 6243770 6244161 -275949503 + MLT1B LTR MaLR 4 384 -6 278 316 103 0 chr1 6244217 6244391 -275949273 - L2 LINE L2 -505 2809 2618 1971 253 69 23 chr1 6246565 6247131 -275946533 + MLT1E LTR MaLR 1 592 -1 611 217 84 7 chr1 6247133 6247276 -275946388 + MIR SINE MIR 37 190 -72 710 242 36 16 chr1 6247294 6247488 -275946176 + MER105 DNA DNA 7 204 0 1262 152 13 45 chr1 6248747 6248971 -275944693 + AluJo SINE Alu 86 302 -10 235 257 54 14 chr1 6249617 6249691 -275943973 - MER63 DNA MER1_type 0 1062 986 288 229 165 28 chr1 6249702 6249811 -275943853 - MER63 DNA MER1_type -81 755 6 2349 82 7 7 chr1 6249991 6250284 -275943380 + AluSq SINE Alu 1 293 -20 2569 48 10 16 chr1 6250310 6250623 -275943041 + AluY SINE Alu 1 311 0 1234 227 24 66 chr1 6251206 6251778 -275941886 + MLT2B1 LTR ERVL 1 442 -112 622 231 8 0 chr1 6251746 6251974 -275941690 + MLT2B1 LTR ERVL 267 397 -123 * 622 231 8 0 chr1 6251942 6252366 -275941298 + MLT2B1 LTR ERVL 267 397 -123 * 1237 214 6 59 chr1 6252334 6252684 -275940980 + MLT2B1 LTR ERVL 267 634 114 1522 87 31 26 chr1 6252684 6252913 -275940751 - MER30 DNA MER1_type 0 230 1 1237 214 6 59 chr1 6252913 6252931 -275940733 + MLT2B1 LTR ERVL 634 474 -46 204 40 0 0 chr1 6252931 6252956 -275940708 + (CA)n Simple_repeat Simple_repeat 2 26 0 1237 214 6 59 chr1 6252956 6253002 -275940662 + MLT2B1 LTR ERVL 473 520 0 306 250 139 9 chr1 6254727 6254835 -275938829 + MIR SINE MIR 32 153 -109 218 249 73 146 chr1 6255293 6255349 -275938315 - MIR SINE MIR -55 207 148 2304 120 0 0 chr1 6255349 6255658 -275938006 - AluY SINE Alu -2 309 1 218 249 73 146 chr1 6255658 6255806 -275937858 - MIR SINE MIR -114 148 18 1828 216 35 46 chr1 6255913 6256394 -275937270 + MLT1D LTR MaLR 8 483 -22 500 236 40 27 chr1 6257612 6257760 -275935904 + MER117 DNA MER1_type 1 150 -47 264 305 11 12 chr1 6257790 6257903 -275935761 - MIR3 SINE MIR -52 156 40 1493 241 84 44 chr1 6257959 6258528 -275935136 + MLT1E LTR MaLR 1 592 -1 207 339 9 26 chr1 6258575 6258690 -275934974 + L2 LINE L2 1945 2057 -1257 518 232 153 23 chr1 6258882 6259059 -275934605 - MIR SINE MIR -31 231 32 662 238 24 0 chr1 6259101 6259265 -275934399 - MER20 DNA MER1_type -21 198 31 372 94 0 0 chr1 6259959 6260012 -275933652 + (CA)n Simple_repeat Simple_repeat 1 53 0 242 258 72 62 chr1 6260086 6260183 -275933481 + L2 LINE L2 3169 3266 -6 460 211 18 18 chr1 6260718 6260827 -275932837 + MIR SINE MIR 45 153 -55 299 264 14 14 chr1 6260874 6261022 -275932642 + CT-rich Low_complexity Low_complexity 1 148 0 2039 134 14 3 chr1 6261310 6261601 -275932063 - AluJb SINE Alu -18 294 1 308 189 14 0 chr1 6262869 6262943 -275930721 + (TG)n Simple_repeat Simple_repeat 2 76 0 546 202 26 16 chr1 6263000 6263547 -275930117 + (TG)n Simple_repeat Simple_repeat 1 552 0 600 172 20 26 chr1 6263576 6263920 -275929744 + (TG)n Simple_repeat Simple_repeat 1 342 0 326 279 0 23 chr1 6264263 6264349 -275929315 + L2 LINE L2 3184 3267 -5 506 133 11 0 chr1 6265191 6265281 -275928383 + (TG)n Simple_repeat Simple_repeat 2 92 0 458 323 15 13 chr1 6265304 6265618 -275928046 + (TG)n Simple_repeat Simple_repeat 1 314 0 862 312 42 45 chr1 6266925 6267566 -275926098 + HAL1 LINE L1 69 707 -1800 769 246 75 12 chr1 6267651 6267903 -275925761 + HAL1 LINE L1 2240 2507 0 2081 112 7 7 chr1 6267911 6268197 -275925467 + AluSx SINE Alu 1 286 -26 288 200 0 0 chr1 6269102 6269162 -275924502 + (CA)n Simple_repeat Simple_repeat 1 60 0 1692 160 56 14 chr1 6269233 6269589 -275924075 - L1MB3 LINE L1 0 6183 5813 193 409 27 9 chr1 6271679 6271789 -275921875 + MIR SINE MIR 9 120 -142 576 299 28 71 chr1 6271961 6272285 -275921379 - L2 LINE L2 -1 3312 3003 333 311 31 88 chr1 6273318 6273513 -275920151 - MIR SINE MIR -56 152 9 734 184 69 17 chr1 6273938 6274112 -275919552 + MER5A DNA MER1_type 1 183 -6 547 317 11 63 chr1 6274250 6274616 -275919048 + MLT1I LTR MaLR 63 409 0 273 316 67 97 chr1 6277323 6277665 -275915999 + L2 LINE L2 2938 3269 -3 513 0 0 0 chr1 6277672 6277729 -275915935 + (GGATG)n Simple_repeat Simple_repeat 4 60 0 384 297 90 19 chr1 6277915 6278070 -275915594 + MIR SINE MIR 18 183 -79 204 244 0 0 chr1 6278726 6278767 -275914897 - L2 LINE L2 -5 3267 3227 779 241 59 15 chr1 6279484 6279687 -275913977 - MIR SINE MIR -38 224 13 258 288 144 8 chr1 6280143 6280261 -275913403 - MIR3 SINE MIR -49 159 26 2238 211 65 0 chr1 6280342 6280835 -275912829 + L1MB5 LINE L1 5650 6174 0 622 198 112 99 chr1 6282063 6282127 -275911537 - MER33 DNA MER1_type -2263 322 260 1089 81 0 7 chr1 6282127 6282275 -275911389 + L1PA8 LINE L1 6022 6168 -4 622 198 112 99 chr1 6282275 6282524 -275911140 - MER33 DNA MER1_type -2325 260 5 240 185 0 0 chr1 6283059 6283113 -275910551 + (TA)n Simple_repeat Simple_repeat 2 55 0 21 0 0 0 chr1 6283583 6283604 -275910060 + AT_rich Low_complexity Low_complexity 1 21 0 340 324 101 45 chr1 6284236 6284591 -275909073 - L2 LINE L2 -1 3271 2897 468 0 0 0 chr1 6284769 6284821 -275908843 + (TCTA)n Simple_repeat Simple_repeat 4 55 0 1811 158 0 0 chr1 6284821 6285106 -275908558 - AluSx SINE Alu -27 285 1 689 274 99 16 chr1 6285327 6285641 -275908023 + MER102b DNA MER1_type 1 340 -1 577 235 0 41 chr1 6285823 6285993 -275907671 + LTR41 LTR ERVL 1 163 -610 205 211 0 0 chr1 6286017 6286055 -275907609 + (TTA)n Simple_repeat Simple_repeat 2 39 0 339 250 16 80 chr1 6286312 6286500 -275907164 + LTR41 LTR ERVL 597 772 -1 1498 110 0 0 chr1 6286510 6286730 -275906934 + AluSg/x SINE Alu 84 303 0 248 242 0 29 chr1 6287032 6287100 -275906564 + MIR SINE MIR 78 144 -64 380 246 16 25 chr1 6287176 6287298 -275906366 - L1ME1 LINE L1 -6 6160 6040 663 273 56 41 chr1 6287307 6287490 -275906174 - L1MDa LINE L1 -4631 1909 1717 1963 130 7 7 chr1 6287490 6287789 -275905875 + AluSx SINE Alu 2 300 -12 663 273 56 41 chr1 6287789 6287946 -275905718 - L1MDa LINE L1 -4823 1717 1564 1183 330 43 20 chr1 6287960 6288665 -275904999 - L1MDa LINE L1 -5657 1064 344 222 37 0 0 chr1 6289244 6289271 -275904393 + (TG)n Simple_repeat Simple_repeat 1 27 0 2032 152 3 44 chr1 6340123 6340486 -275853178 - MER7A DNA MER2_type 0 346 1 1026 148 12 6 chr1 6342548 6342717 -275850947 + AluJb SINE Alu 133 302 -10 299 306 10 93 chr1 6343300 6343493 -275850171 - MIR3 SINE MIR -3 205 29 2132 132 6 6 chr1 6343817 6344128 -275849536 - AluSx SINE Alu 0 312 2 315 267 0 0 chr1 6344409 6344495 -275849169 + L1MD2 LINE L1 5803 5888 -471 2047 117 81 119 chr1 6344589 6345034 -275848630 + MSTA LTR MaLR 1 428 0 24 0 0 0 chr1 6345142 6345166 -275848498 + AT_rich Low_complexity Low_complexity 1 24 0 209 265 0 0 chr1 6345678 6345727 -275847937 - L3 LINE CR1 -1 1576 1528 815 285 185 20 chr1 6347112 6347168 -275846496 - L2 LINE L2 -609 2705 2660 2105 136 16 10 chr1 6347168 6347477 -275846187 + AluSx SINE Alu 1 311 -1 815 285 185 20 chr1 6347477 6348107 -275845557 - L2 LINE L2 -654 2660 1906 289 245 358 6 chr1 6348110 6348473 -275845191 - L2 LINE L2 -1528 1786 1296 185 307 109 36 chr1 6348580 6348772 -275844892 - L2 LINE L2 -153 3160 2955 666 200 166 0 chr1 6348927 6349072 -275844592 + AluSp SINE Alu 137 305 -8 200 184 0 0 chr1 6349532 6349570 -275844094 + G-rich Low_complexity Low_complexity 4 41 0 261 294 0 15 chr1 6349688 6349756 -275843908 - MIR SINE MIR -170 92 26 198 345 45 9 chr1 6349971 6350081 -275843583 + MIR SINE MIR 19 132 -76 198 240 104 31 chr1 6351065 6351161 -275842503 - MIR3 SINE MIR -18 190 88 23 33 0 0 chr1 6353259 6353289 -275840375 + AT_rich Low_complexity Low_complexity 1 30 0 341 209 0 30 chr1 6353929 6353996 -275839668 + HAL1b LINE L1 1279 1343 -5 248 196 34 80 chr1 6355024 6355147 -275838517 + L1MD3 LINE L1 7904 8030 -12 2171 137 0 13 chr1 6355147 6355453 -275838211 + AluSx SINE Alu 1 302 -10 248 196 34 80 chr1 6355453 6355466 -275838198 + L1MD3 LINE L1 8030 8042 0 240 245 85 9 chr1 6355493 6355599 -275838065 + L1ME2 LINE L1 5954 6067 -97 1119 182 48 0 chr1 6357002 6357211 -275836453 + MER20 DNA MER1_type 1 219 0 1060 324 91 22 chr1 6357312 6357772 -275835892 + L3 LINE CR1 281 772 -805 2283 97 3 3 chr1 6358026 6358324 -275835340 + AluSg SINE Alu 3 300 -10 433 346 31 0 chr1 6359023 6359182 -275834482 + MIR SINE MIR 7 170 -92 376 310 66 19 chr1 6359634 6359905 -275833759 - L1ME3A LINE L1 -208 5962 5679 1692 195 51 95 chr1 6359934 6360254 -275833410 + Charlie1a DNA MER1_type 2 288 -2473 2234 109 7 0 chr1 6360254 6360548 -275833116 - AluSq SINE Alu -17 296 1 1692 195 51 95 chr1 6360548 6360795 -275832869 + Charlie1a DNA MER1_type 288 544 -911 3388 239 73 43 chr1 6360795 6361215 -275832449 + L1MEc LINE L1 36 442 -5773 2125 116 7 0 chr1 6361215 6361507 -275832157 + AluSg1 SINE Alu 1 294 -15 3388 239 73 43 chr1 6361507 6361774 -275831890 + L1MEc LINE L1 442 699 -5516 2461 91 0 3 chr1 6361774 6362082 -275831582 + AluSx SINE Alu 1 307 -5 3388 239 73 43 chr1 6362082 6363403 -275830261 + L1MEc LINE L1 699 1978 -4237 1985 152 3 0 chr1 6363403 6363712 -275829952 + AluSx SINE Alu 1 310 0 3388 239 73 43 chr1 6363712 6363827 -275829837 + L1MEc LINE L1 1978 2088 -4127 2146 116 0 7 chr1 6363827 6364121 -275829543 + AluY SINE Alu 1 292 -19 3388 239 73 43 chr1 6364121 6364466 -275829198 + L1MEc LINE L1 2088 2586 -3629 314 122 54 189 chr1 6364573 6364721 -275828943 + L1MEc LINE L1 2779 2906 -3309 3440 156 43 84 chr1 6364725 6365648 -275828016 + Charlie1a DNA MER1_type 571 1455 0 2334 71 44 3 chr1 6365787 6366082 -275827582 - AluY SINE Alu -4 307 1 369 302 132 15 chr1 6366130 6366338 -275827326 - MIR SINE MIR -19 243 16 357 232 40 73 chr1 6366360 6366511 -275827153 + L2 LINE L2 3084 3229 -84 2397 105 0 0 chr1 6367105 6367409 -275826255 + AluSx SINE Alu 9 312 0 2269 99 24 0 chr1 6368374 6368666 -275824998 + AluSc SINE Alu 1 299 -10 1988 149 0 10 chr1 6369158 6369453 -275824211 - AluJo SINE Alu -6 306 15 405 290 40 112 chr1 6369468 6369771 -275823893 + L2 LINE L2 2985 3265 -7 433 306 69 76 chr1 6370880 6371155 -275822509 - L1MCa LINE L1 -4757 1372 939 2425 99 0 3 chr1 6371244 6371556 -275822108 - AluSx SINE Alu -1 311 1 305 319 43 94 chr1 6371556 6372298 -275821366 - L1MCa LINE L1 -5113 1006 303 326 272 128 16 chr1 6372358 6372483 -275821181 - L1MCa LINE L1 -5933 186 48 275 174 41 143 chr1 6373225 6373323 -275820341 + MIR SINE MIR 35 122 -86 547 245 21 21 chr1 6373561 6373704 -275819960 - L1MA10 LINE L1 -3 6331 6189 743 189 11 0 chr1 6374447 6374622 -275819042 + (TCCA)n Simple_repeat Simple_repeat 4 180 0 607 206 11 0 chr1 6374639 6374814 -275818850 + (TCCA)n Simple_repeat Simple_repeat 2 178 0 431 257 254 50 chr1 6374850 6375247 -275818417 - L2 LINE L2 0 3313 2836 1712 174 7 4 chr1 6376532 6376808 -275816856 + AluJo SINE Alu 17 293 -19 1877 189 0 10 chr1 6376810 6377117 -275816547 + AluJb SINE Alu 1 304 -8 475 172 11 11 chr1 6377293 6377380 -275816284 - MER74B LTR ERVL -453 169 83 1620 236 64 79 chr1 6377398 6378130 -275815534 - L1ME LINE L1 -5348 722 2 390 316 61 27 chr1 6378330 6378659 -275815005 - L1MEd LINE L1 -3382 2747 2408 484 265 46 81 chr1 6378728 6378877 -275814787 - L1MEd LINE L1 -4888 1231 1093 2398 84 10 3 chr1 6378877 6379188 -275814476 - AluSq SINE Alu 0 313 1 484 265 46 81 chr1 6379188 6379298 -275814366 - L1MEd LINE L1 -5026 1093 981 1774 106 37 16 chr1 6379308 6379554 -275814110 - AluSx SINE Alu -13 299 49 218 236 135 47 chr1 6379621 6379769 -275813895 + L2 LINE L2 11 171 -3143 377 343 14 21 chr1 6379850 6379993 -275813671 + L2 LINE L2 3172 3313 0 880 131 56 0 chr1 6380134 6380294 -275813370 - L1MB3 LINE L1 -1 6182 6014 806 146 42 0 chr1 6380469 6380613 -275813051 - MSTA LTR MaLR 0 428 279 1709 174 42 0 chr1 6380614 6380901 -275812763 - AluJb SINE Alu -13 299 1 199 238 0 0 chr1 6382092 6382134 -275811530 - L3 LINE CR1 -1 1576 1535 316 237 206 0 chr1 6382455 6382552 -275811112 + L2 LINE L2 3197 3313 0 674 191 34 45 chr1 6384583 6384665 -275808999 - MER5B DNA MER1_type 0 178 97 2490 80 0 7 chr1 6384665 6384966 -275808698 - AluSx SINE Alu -13 299 1 674 191 34 45 chr1 6384966 6385061 -275808603 - MER5B DNA MER1_type -81 97 3 350 263 143 23 chr1 6387589 6387764 -275805900 - MLT1J LTR MaLR -309 202 7 293 245 53 0 chr1 6387775 6387869 -275805795 - L1M4 LINE L1 -3085 3061 2963 334 309 82 53 chr1 6387871 6388078 -275805586 - L1MC5 LINE L1 -30 7931 7719 1000 228 33 14 chr1 6388101 6388377 -275805287 - L1ME2 LINE L1 -10 6223 5943 210 37 0 0 chr1 6388383 6388410 -275805254 + (TA)n Simple_repeat Simple_repeat 1 27 0 563 127 45 82 chr1 6388421 6388555 -275805109 - L1PB3 LINE L1 -2 6152 6024 2552 174 67 72 chr1 6388559 6389286 -275804378 - L1ME2 LINE L1 -259 5974 5244 2064 126 0 10 chr1 6389286 6389579 -275804085 - AluSx SINE Alu -22 290 1 2552 174 67 72 chr1 6389579 6389640 -275804024 - L1ME2 LINE L1 -989 5244 5184 1835 172 10 10 chr1 6389640 6389948 -275803716 - AluJb SINE Alu -4 308 1 2552 174 67 72 chr1 6389948 6390084 -275803580 - L1ME2 LINE L1 -1049 5184 5071 2082 127 141 5 chr1 6390090 6390460 -275803204 - MSTA LTR MaLR -8 420 1 2420 179 61 7 chr1 6390460 6391030 -275802634 - L1ME2 LINE L1 -1148 5067 4467 1729 249 87 14 chr1 6391047 6392140 -275801524 - L1ME2 LINE L1 -3598 2617 1476 224 269 76 48 chr1 6392310 6392359 -275801305 + MIR3 SINE MIR 35 81 -127 2572 98 0 14 chr1 6392359 6392728 -275800936 - THE1B LTR MaLR 0 364 1 224 269 76 48 chr1 6392728 6392843 -275800821 + MIR3 SINE MIR 81 208 0 39 22 0 0 chr1 6394553 6394599 -275799065 + AT_rich Low_complexity Low_complexity 1 46 0 2291 104 0 0 chr1 6394612 6394901 -275798763 - AluSx SINE Alu -23 289 1 3189 105 2 25 chr1 6394901 6395415 -275798249 - L1MA2 LINE L1 -25 6279 5776 390 348 12 6 chr1 6395448 6395609 -275798055 + MIR SINE MIR 53 214 -48 2229 97 0 32 chr1 6395613 6395921 -275797743 + AluSc SINE Alu 1 298 -11 2744 82 0 0 chr1 6396131 6396495 -275797169 - THE1B LTR MaLR 0 364 1 1614 226 18 28 chr1 6397229 6397623 -275796041 + L1MB8 LINE L1 5784 6173 -5 181 330 17 51 chr1 6398062 6398180 -275795484 + MIR SINE MIR 34 147 -115 2845 186 3 42 chr1 6399574 6400101 -275793563 + L1MB1 LINE L1 5602 6105 -63 2309 131 0 0 chr1 6400101 6400414 -275793250 + AluSq SINE Alu 1 313 0 2845 186 3 42 chr1 6400414 6400476 -275793188 + L1MB1 LINE L1 6105 6168 0 204 299 51 34 chr1 6400666 6400783 -275792881 + L2 LINE L2 3150 3268 -4 25 65 0 0 chr1 6403082 6403128 -275790536 + AT_rich Low_complexity Low_complexity 1 46 0 583 266 57 11 chr1 6403131 6403308 -275790356 + L1MD2 LINE L1 5948 6132 -227 263 291 74 20 chr1 6403318 6403466 -275790198 + L1MD1 LINE L1 6079 6234 -8 191 167 241 0 chr1 6403608 6403662 -275790002 - MIR SINE MIR -89 173 107 359 250 205 0 chr1 6404673 6404785 -275788879 + L2 LINE L2 3179 3313 0 2306 119 3 0 chr1 6405991 6406293 -275787371 - AluSx SINE Alu -9 303 1 2084 137 0 7 chr1 6406445 6406745 -275786919 + AluSx SINE Alu 1 298 -14 1725 206 24 12 chr1 6406768 6407191 -275786473 + L1MB8 LINE L1 5751 6178 0 285 268 0 0 chr1 6408024 6408162 -275785502 + (CA)n Simple_repeat Simple_repeat 2 139 0 223 294 24 32 chr1 6409989 6410115 -275783549 + (CGGGG)n Simple_repeat Simple_repeat 5 129 0 211 293 0 0 chr1 6410942 6411000 -275782664 + G-rich Low_complexity Low_complexity 1 58 0 308 250 10 31 chr1 6412065 6412161 -275781503 + LTR67 LTR ERVL 459 552 -5 807 211 29 29 chr1 6412315 6412519 -275781145 + MIR SINE MIR 39 242 -20 419 322 49 83 chr1 6412574 6412838 -275780826 - L2 LINE L2 -18 3254 3000 579 267 78 0 chr1 6413224 6413427 -275780237 + MIR SINE MIR 25 250 -12 1886 194 25 75 chr1 6415513 6416044 -275777620 + MLT1D LTR MaLR 1 504 -1 183 220 80 0 chr1 6418685 6418735 -275774929 + MIR SINE MIR 81 134 -128 198 0 0 0 chr1 6419190 6419212 -275774452 + (GCTG)n Simple_repeat Simple_repeat 3 24 0 670 282 79 29 chr1 6420202 6420482 -275773182 + L1ME4a LINE L1 5800 6093 -28 2240 110 10 3 chr1 6420483 6420791 -275772873 - AluSx SINE Alu -2 310 1 26 30 0 0 chr1 6420825 6420858 -275772806 + AT_rich Low_complexity Low_complexity 1 33 0 2629 58 0 3 chr1 6420888 6421196 -275772468 - AluY SINE Alu -4 307 1 229 325 0 38 chr1 6421768 6421848 -275771816 - MIR SINE MIR -70 192 116 571 295 52 10 chr1 6421866 6422059 -275771605 - MIR SINE MIR -13 249 49 293 216 144 31 chr1 6422786 6422883 -275770781 + MLT1I LTR MaLR 294 401 -8 226 359 54 12 chr1 6423315 6423482 -275770182 + MIR SINE MIR 24 197 -65 205 319 121 14 chr1 6423485 6423626 -275770038 + MIR3 SINE MIR 17 172 -36 * 284 282 69 12 chr1 6423618 6423738 -275769926 - MIR SINE MIR -68 140 22 382 316 16 1 chr1 6424504 6424649 -275769015 + MIR SINE MIR 9 153 -62 317 254 16 56 chr1 6424774 6424900 -275768764 + MIR SINE MIR 94 214 -48 356 216 0 0 chr1 6425168 6425242 -275768422 + MIR SINE MIR 89 162 -100 4267 197 67 38 chr1 6425275 6425663 -275768001 + L1MB8 LINE L1 4105 4480 -1698 2031 112 10 26 chr1 6425663 6425967 -275767697 + AluSx SINE Alu 1 299 -13 4267 197 67 38 chr1 6425967 6426863 -275766801 + L1MB8 LINE L1 4480 5348 -830 1625 176 27 23 chr1 6426863 6427164 -275766500 + AluJo SINE Alu 11 312 0 4267 197 67 38 chr1 6427164 6427699 -275765965 + L1MB8 LINE L1 5348 5992 -186 1981 135 35 0 chr1 6427699 6427987 -275765677 + AluJb SINE Alu 1 298 -14 4267 197 67 38 chr1 6427987 6428180 -275765484 + L1MB8 LINE L1 5992 6178 0 441 229 97 21 chr1 6428182 6428326 -275765338 - L2 LINE L2 0 3313 3159 795 205 36 6 chr1 6428333 6428499 -275765165 - Tigger5 DNA MER2_type 0 2323 2153 655 155 17 9 chr1 6428491 6428607 -275765057 - Tigger5 DNA MER2_type -2206 117 1 * 398 249 136 86 chr1 6428607 6429015 -275764649 - L2 LINE L2 -160 3153 2708 2292 166 52 14 chr1 6429015 6429467 -275764197 + L1MB3 LINE L1 5682 6155 -28 2535 77 3 3 chr1 6429467 6429777 -275763887 - AluSg SINE Alu 0 310 1 2292 166 52 14 chr1 6429777 6429806 -275763858 + L1MB3 LINE L1 6155 6181 -2 398 249 136 86 chr1 6429806 6429896 -275763768 - L2 LINE L2 -605 2708 2624 204 254 0 0 chr1 6430119 6430178 -275763486 + GA-rich Low_complexity Low_complexity 4 62 0 1953 126 23 23 chr1 6430655 6430956 -275762708 - AluJo SINE Alu 0 312 12 30 45 0 0 chr1 6431076 6431120 -275762544 + AT_rich Low_complexity Low_complexity 1 44 0 186 133 0 0 chr1 6431255 6431285 -275762379 + (A)n Simple_repeat Simple_repeat 1 30 0 348 242 33 22 chr1 6431778 6431869 -275761795 + LTR16C LTR ERVL 388 479 -12 199 293 37 0 chr1 6432186 6432268 -275761396 + MIR3 SINE MIR 4 88 -120 1957 218 118 4 chr1 6432759 6433226 -275760438 + MLT2B1 LTR ERVL 1 520 0 255 115 0 77 chr1 6433341 6433393 -275760271 - L2 LINE L2 -93 3179 3132 403 276 55 0 chr1 6433393 6433520 -275760144 - L2 LINE L2 0 3313 3180 198 294 44 0 chr1 6434293 6434361 -275759303 + L2 LINE L2 3234 3304 -9 209 325 158 0 chr1 6435301 6435415 -275758249 + MIR SINE MIR 118 249 -13 983 101 0 57 chr1 6435424 6435919 -275757745 + (ATGGTG)n Simple_repeat Simple_repeat 1 647 0 740 86 27 54 chr1 6435930 6436155 -275757509 + (ATGGTG)n Simple_repeat Simple_repeat 1 218 0 736 113 16 48 chr1 6436166 6436352 -275757312 + (ATGGTG)n Simple_repeat Simple_repeat 1 180 0 2483 74 0 0 chr1 6436378 6436674 -275756990 - AluY SINE Alu -11 300 5 243 313 111 14 chr1 6437428 6437572 -275756092 + MIR3 SINE MIR 33 190 -18 205 119 48 0 chr1 6438684 6438726 -275754938 + G-rich Low_complexity Low_complexity 4 47 0 3433 191 62 58 chr1 6439348 6439826 -275753838 + L1ME1 LINE L1 4589 5063 -1271 2002 129 56 0 chr1 6439826 6440112 -275753552 + AluSx SINE Alu 1 302 -10 3433 191 62 58 chr1 6440112 6440162 -275753502 + L1ME1 LINE L1 5063 5111 -1223 773 196 144 7 chr1 6440162 6440315 -275753349 + FAM SINE Alu 1 174 -1 3433 191 62 58 chr1 6440315 6441370 -275752294 + L1ME1 LINE L1 5111 6333 -1 316 329 0 0 chr1 6441708 6441793 -275751871 + MIR SINE MIR 92 176 -86 193 97 0 0 chr1 6443262 6443293 -275750371 - L2 LINE L2 -313 2959 2929 2238 120 0 22 chr1 6443588 6443722 -275749942 + AluSg SINE Alu 1 136 -174 2330 60 3 3 chr1 6443722 6444036 -275749628 + AluY SINE Alu 1 314 0 2238 120 0 22 chr1 6444036 6444217 -275749447 + AluSg SINE Alu 136 310 0 24 0 0 0 chr1 6444357 6444381 -275749283 + AT_rich Low_complexity Low_complexity 1 24 0 368 338 53 13 chr1 6444541 6444769 -275748895 - L2 LINE L2 -214 3099 2863 2324 211 54 6 chr1 6445532 6446049 -275747615 + MER119 DNA MER1_type 2 543 -40 1400 176 59 0 chr1 6446049 6446166 -275747498 + AluJo SINE Alu 1 110 -202 186 43 0 0 chr1 6446166 6446189 -275747475 + (TGAA)n Simple_repeat Simple_repeat 3 25 0 1400 176 59 0 chr1 6446189 6446310 -275747354 + AluJo SINE Alu 110 253 -59 26 0 0 0 chr1 6446310 6446336 -275747328 + AT_rich Low_complexity Low_complexity 1 26 0 1820 175 0 28 chr1 6446342 6446662 -275747002 + AluJo SINE Alu 1 311 -1 997 177 19 18 chr1 6446669 6447091 -275746573 + GA-rich Low_complexity Low_complexity 1 600 0 234 285 146 35 chr1 6447224 6447368 -275746296 - MIR SINE MIR -36 226 67 529 290 14 0 chr1 6449130 6449268 -275744396 + L2 LINE L2 3173 3312 -1 198 319 153 0 chr1 6449565 6449637 -275744027 + L2 LINE L2 3168 3250 -22 778 258 154 30 chr1 6450582 6451083 -275742581 + MLT1F1 LTR MaLR 5 567 0 218 235 73 0 chr1 6451093 6451161 -275742503 + MIR SINE MIR 73 145 -117 2451 107 19 25 chr1 6451450 6451816 -275741848 + THE1B LTR MaLR 1 364 0 11447 103 9 15 chr1 6451816 6453405 -275740259 + THE1B-int LTR MaLR 1 1580 0 2423 108 28 19 chr1 6453405 6453766 -275739898 + THE1B LTR MaLR 1 364 0 390 310 249 18 chr1 6455629 6456184 -275737480 + L2 LINE L2 2230 2912 -402 * 547 306 62 65 chr1 6456183 6456601 -275737063 + L2 LINE L2 2855 3271 -1 231 342 43 17 chr1 6456640 6456757 -275736907 + L2 LINE L2 3143 3262 -10 193 310 101 62 chr1 6458896 6458977 -275734687 - L2 LINE L2 0 3313 3224 2090 127 10 0 chr1 6458977 6459277 -275734387 + AluSq SINE Alu 1 303 -10 193 310 101 62 chr1 6459277 6459324 -275734340 - L2 LINE L2 -89 3224 3180 191 200 100 0 chr1 6460287 6460337 -275733327 - MIR SINE MIR -123 139 85 202 186 0 34 chr1 6461351 6461410 -275732254 + GA-rich Low_complexity Low_complexity 3 59 0 188 339 15 0 chr1 6461474 6461539 -275732125 - L2 LINE L2 0 3272 3207 184 276 181 29 chr1 6466040 6466145 -275727519 + L2 LINE L2 3170 3290 -23 2309 121 0 3 chr1 6467882 6468195 -275725469 + AluSq SINE Alu 1 312 -1 1748 133 3 117 chr1 6468484 6468836 -275724828 + AluJo SINE Alu 1 312 0 365 307 163 40 chr1 6468843 6469273 -275724391 - L2 LINE L2 -1036 2278 1796 232 327 78 20 chr1 6469335 6469488 -275724176 - L2 LINE L2 -1002 2312 2151 2559 211 129 14 chr1 6469967 6470710 -275722954 - L1ME2 LINE L1 -1 6163 5335 * 2662 251 69 73 chr1 6470700 6471281 -275722383 - L1ME1 LINE L1 -39 6127 5545 2066 120 17 10 chr1 6471281 6471303 -275722361 - AluSx SINE Alu -8 304 284 306 0 0 0 chr1 6471303 6471337 -275722327 + (TG)n Simple_repeat Simple_repeat 1 34 0 2066 120 17 10 chr1 6471337 6471615 -275722049 - AluSx SINE Alu -28 284 2 2662 251 69 73 chr1 6471615 6472983 -275720681 - L1ME1 LINE L1 -621 5545 4200 369 109 0 0 chr1 6473895 6473950 -275719714 + (TG)n Simple_repeat Simple_repeat 2 56 0 2420 89 0 0 chr1 6474912 6475216 -275718448 - AluY SINE Alu -7 304 1 206 179 60 60 chr1 6476260 6476344 -275717320 + L2 LINE L2 2895 2978 -294 612 336 190 10 chr1 6477496 6478247 -275715417 - L2 LINE L2 -43 3270 2406 2180 62 72 10 chr1 6480198 6480489 -275713175 - AluSg SINE Alu -1 309 1 228 67 0 0 chr1 6480874 6480904 -275712760 + (A)n Simple_repeat Simple_repeat 1 30 0 238 280 27 13 chr1 6482240 6482315 -275711349 + L1MD3 LINE L1 7900 7975 -20 1603 185 7 23 chr1 6482617 6482925 -275710739 + AluJo SINE Alu 1 303 -9 207 100 0 0 chr1 6484651 6484681 -275708983 + (A)n Simple_repeat Simple_repeat 1 30 0 454 259 184 4 chr1 6485285 6485540 -275708124 - L2 LINE L2 -3 3310 3010 405 0 0 0 chr1 6489151 6489196 -275704468 + (TG)n Simple_repeat Simple_repeat 2 46 0 712 213 150 38 chr1 6489434 6489721 -275703943 + MER33 DNA MER1_type 2 320 -4 631 231 153 27 chr1 6489726 6490021 -275703643 + L2 LINE L2 802 1133 -2181 1632 264 125 80 chr1 6490021 6490296 -275703368 + L2 LINE L2 1720 1981 -1332 1582 139 13 0 chr1 6490296 6490526 -275703138 + AluSx SINE Alu 3 235 -77 1632 264 125 80 chr1 6490526 6491133 -275702531 + L2 LINE L2 1981 2559 -754 1469 218 65 12 chr1 6491133 6491454 -275702210 - MER58B DNA MER1_type 0 341 4 1632 264 125 80 chr1 6491454 6491490 -275702174 + L2 LINE L2 2559 2592 -721 1986 134 0 3 chr1 6491490 6491802 -275701862 - AluSg SINE Alu 0 311 1 1632 264 125 80 chr1 6491802 6492134 -275701530 + L2 LINE L2 2592 3036 -277 863 239 113 13 chr1 6492303 6492541 -275701123 + MIR SINE MIR 1 262 0 426 225 73 73 chr1 6492544 6492695 -275700969 + L2 LINE L2 3163 3313 0 1953 157 7 3 chr1 6492796 6493101 -275700563 + AluJb SINE Alu 1 306 -6 1207 192 77 27 chr1 6493111 6493408 -275700256 + AluJo SINE Alu 1 312 0 1652 135 37 80 chr1 6493557 6493883 -275699781 + AluJo SINE Alu 1 312 0 189 308 26 13 chr1 6495514 6495592 -275698072 - L2 LINE L2 -16 3256 3178 188 291 76 13 chr1 6496461 6496540 -275697124 + MIR3 SINE MIR 104 187 -21 2126 121 0 3 chr1 6496819 6497116 -275696548 + AluSq SINE Alu 1 296 -17 272 263 0 42 chr1 6497241 6497336 -275696328 + A-rich Low_complexity Low_complexity 3 93 0 213 214 0 54 chr1 6497714 6497770 -275695894 - MER5B DNA MER1_type -125 53 1 2042 99 34 14 chr1 6497897 6498191 -275695473 + AluSg SINE Alu 1 300 -10 414 266 63 19 chr1 6498324 6498482 -275695182 + MIR SINE MIR 47 211 -51 860 227 32 19 chr1 6498999 6499215 -275694449 - MIR SINE MIR -28 234 16 189 250 12 62 chr1 6499345 6499425 -275694239 - MIR SINE MIR -71 191 116 22 0 0 0 chr1 6500206 6500228 -275693436 + AT_rich Low_complexity Low_complexity 1 22 0 303 28 0 0 chr1 6501217 6501253 -275692411 + (TGG)n Simple_repeat Simple_repeat 3 38 0 24 32 0 0 chr1 6501598 6501629 -275692035 + AT_rich Low_complexity Low_complexity 1 31 0 306 0 0 0 chr1 6505116 6505150 -275688514 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 537 123 0 0 chr1 6505167 6505240 -275688424 - AluSg/x SINE Alu -36 273 201 1615 147 16 60 chr1 6505360 6505674 -275687990 + AluJo SINE Alu 1 300 -12 26 30 0 0 chr1 6505698 6505731 -275687933 + AT_rich Low_complexity Low_complexity 1 33 0 448 231 89 13 chr1 6506246 6506418 -275687246 + L1MA10 LINE L1 5986 6332 -2 279 335 37 69 chr1 6507134 6507322 -275686342 - MER5A DNA MER1_type 0 189 8 569 310 16 22 chr1 6507624 6507808 -275685856 + MIR SINE MIR 47 229 -33 201 329 198 6 chr1 6507823 6507990 -275685674 - MIR SINE MIR -12 250 52 195 279 29 0 chr1 6508085 6508153 -275685511 + L2 LINE L2 3203 3272 0 801 143 0 8 chr1 6508365 6508484 -275685180 + FLAM_C SINE Alu 1 118 -25 615 298 120 64 chr1 6508511 6509255 -275684409 - L2 LINE L2 -1 3271 2497 2801 172 60 14 chr1 6509275 6509846 -275683818 + L1MC3 LINE L1 7187 7783 -2 331 326 134 8 chr1 6509859 6510120 -275683544 - L2 LINE L2 -867 2447 2154 1473 154 63 75 chr1 6510130 6510462 -275683202 + L1MA9 LINE L1 5980 6307 -5 2378 146 90 19 chr1 6510982 6511198 -275682466 + L1MB3 LINE L1 5683 5882 -301 2237 102 0 32 chr1 6511198 6511512 -275682152 + AluSx SINE Alu 1 304 -8 2378 146 90 19 chr1 6511512 6511761 -275681903 + L1MB3 LINE L1 5882 6181 -2 2036 120 31 0 chr1 6512215 6512506 -275681158 + AluSx SINE Alu 1 300 -12 2215 125 0 6 chr1 6512531 6512843 -275680821 - AluSx SINE Alu -2 310 1 320 332 129 22 chr1 6512935 6513206 -275680458 + L1ME4a LINE L1 4762 5061 -1085 420 284 76 42 chr1 6513386 6513650 -275680014 + L1ME4a LINE L1 5284 5556 -2252 1797 165 7 3 chr1 6513660 6513963 -275679701 - AluJo SINE Alu -8 304 1 303 282 134 76 chr1 6514037 6514431 -275679233 + L1ME4a LINE L1 5693 6109 -12 270 0 0 0 chr1 6514998 6515028 -275678636 + (CCA)n Simple_repeat Simple_repeat 3 32 0 589 190 58 16 chr1 6515422 6515543 -275678121 - L2 LINE L2 0 3313 3188 335 263 113 8 chr1 6515667 6515800 -275677864 + L2 LINE L2 3167 3313 0 552 325 73 34 chr1 6516106 6516786 -275676878 + L2 LINE L2 2412 3117 -196 228 143 0 24 chr1 6516869 6516911 -275676753 + (TCCA)n Simple_repeat Simple_repeat 1 41 0 221 239 42 42 chr1 6516912 6516983 -275676681 + L2 LINE L2 3184 3254 -18 * 234 439 46 0 chr1 6516980 6517110 -275676554 + L2 LINE L2 3134 3269 -3 1565 245 21 89 chr1 6517261 6517789 -275675875 + LTR41 LTR ERVL 246 736 -37 2851 128 16 16 chr1 6517789 6518217 -275675447 + MSTA LTR MaLR 1 428 0 1565 245 21 89 chr1 6518217 6518247 -275675417 + LTR41 LTR ERVL 736 766 -7 1381 255 70 22 chr1 6518268 6518770 -275674894 - L1MDa LINE L1 -1794 4746 4221 441 258 97 0 chr1 6518786 6518910 -275674754 - L1MDa LINE L1 -3360 3180 3045 1150 174 36 101 chr1 6518961 6519237 -275674427 - Tigger3(Golem) DNA MER2_type -1 3028 2771 626 199 66 29 chr1 6519233 6519369 -275674295 - Tigger3(Golem) DNA MER2_type -2886 143 3 * 1087 275 98 38 chr1 6519402 6520253 -275673411 - L1MDa LINE L1 -3496 3044 2200 2379 237 98 40 chr1 6520418 6521186 -275672478 + MER21B LTR ERV1 1 812 -51 313 285 87 48 chr1 6521232 6521439 -275672225 - L1MDa LINE L1 -4695 1847 1633 2034 144 7 0 chr1 6521439 6521737 -275671927 - AluSx SINE Alu -12 300 1 960 148 0 0 chr1 6521737 6521872 -275671792 - AluSq/x SINE Alu -177 135 1 306 278 145 47 chr1 6521920 6522225 -275671439 - L1MDa LINE L1 -4928 1612 1298 251 253 116 11 chr1 6523311 6523406 -275670258 - L1 LINE L1 -1088 5058 4954 2270 122 0 0 chr1 6523412 6523716 -275669948 - AluSx SINE Alu -8 304 1 246 235 0 0 chr1 6524332 6524383 -275669281 + MER34 LTR ERV1 25 75 -467 283 242 114 40 chr1 6524643 6524792 -275668872 + MER34 LTR ERV1 368 527 -15 189 304 203 46 chr1 6524821 6525020 -275668644 + L2 LINE L2 2508 2674 -640 1286 210 80 25 chr1 6525020 6525306 -275668358 + AluJo SINE Alu 1 302 0 189 304 203 46 chr1 6525306 6525332 -275668332 + L2 LINE L2 2674 2695 -619 1802 145 24 27 chr1 6525332 6525458 -275668206 + AluSx SINE Alu 6 131 -181 2106 106 3 33 chr1 6525458 6525761 -275667903 + AluSg SINE Alu 1 294 -16 1802 145 24 27 chr1 6525761 6525930 -275667734 + AluSx SINE Alu 131 300 -12 189 304 203 46 chr1 6525930 6526009 -275667655 + L2 LINE L2 2695 2861 -453 1548 138 0 4 chr1 6526224 6526463 -275667201 + AluSx SINE Alu 61 298 -14 622 215 7 56 chr1 6526646 6526790 -275666874 + MER31B LTR ERV1 1 137 -329 2243 127 38 0 chr1 6527122 6527461 -275666203 + THE1B LTR MaLR 13 364 0 596 130 100 0 chr1 6527713 6527813 -275665851 - L1MB7 LINE L1 -6 6178 6069 2085 265 91 12 chr1 6527825 6528387 -275665277 + MLT2E LTR ERVL 21 626 -2 272 242 0 55 chr1 6528471 6528562 -275665102 - L1ME LINE L1 -306 5864 5779 1678 157 3 59 chr1 6528573 6528897 -275664767 - AluJb SINE Alu -6 306 1 937 244 97 15 chr1 6528908 6529446 -275664218 - L1ME3A LINE L1 -2 6160 5437 1494 121 0 0 chr1 6529508 6529707 -275663957 + AluSx SINE Alu 1 199 -113 185 298 60 36 chr1 6529931 6530015 -275663649 + L3 LINE CR1 1464 1549 -28 2289 104 0 13 chr1 6530333 6530649 -275663015 - AluSx SINE Alu 0 312 1 620 244 29 17 chr1 6530729 6530901 -275662763 - MER5B DNA MER1_type -2 176 3 443 329 59 5 chr1 6531663 6531894 -275661770 + L2 LINE L2 1727 1971 -1343 1918 210 30 48 chr1 6531904 6532403 -275661261 + MLT1D LTR MaLR 1 490 -15 1335 255 182 29 chr1 6532420 6533078 -275660586 + L2 LINE L2 1991 2547 -766 2316 82 7 0 chr1 6533078 6533369 -275660295 - AluSq SINE Alu -20 293 1 1335 255 182 29 chr1 6533369 6533847 -275659817 + L2 LINE L2 2547 3313 0 2305 95 10 3 chr1 6533880 6534186 -275659478 - AluSg SINE Alu -2 308 1 1286 164 56 0 chr1 6534230 6534498 -275659166 + AluJo SINE Alu 1 283 -29 288 264 0 66 chr1 6535255 6535361 -275658303 - L2 LINE L2 -88 3225 3127 21 57 0 0 chr1 6535469 6535504 -275658160 + AT_rich Low_complexity Low_complexity 1 35 0 21 0 0 0 chr1 6535566 6535587 -275658077 + AT_rich Low_complexity Low_complexity 1 21 0 2184 64 13 60 chr1 6536017 6536331 -275657333 + AluY SINE Alu 2 300 -11 273 196 0 0 chr1 6536642 6536698 -275656966 + (CA)n Simple_repeat Simple_repeat 1 56 0 273 210 0 0 chr1 6537171 6537233 -275656431 + (TAGG)n Simple_repeat Simple_repeat 2 63 0 867 146 7 0 chr1 6537655 6537799 -275655865 + MER5A DNA MER1_type 44 188 -1 510 138 0 12 chr1 6538250 6538330 -275655334 + L1MB7 LINE L1 6040 6118 -66 1744 154 10 20 chr1 6538341 6538634 -275655030 + AluJo SINE Alu 9 298 -14 185 95 0 48 chr1 6538983 6539025 -275654639 + (TAAAAA)n Simple_repeat Simple_repeat 1 40 0 26 0 0 0 chr1 6539025 6539051 -275654613 + AT_rich Low_complexity Low_complexity 1 26 0 23 33 0 0 chr1 6539100 6539130 -275654534 + AT_rich Low_complexity Low_complexity 1 30 0 294 292 73 0 chr1 6539255 6539351 -275654313 - MIR SINE MIR -86 122 20 285 268 49 12 chr1 6539933 6540015 -275653649 - L2 LINE L2 -1 3312 3228 207 0 0 0 chr1 6540229 6540252 -275653412 + (CTG)n Simple_repeat Simple_repeat 1 23 0 1754 169 30 7 chr1 6540897 6541192 -275652472 + AluJb SINE Alu 3 304 -8 23 0 0 0 chr1 6541220 6541243 -275652421 + AT_rich Low_complexity Low_complexity 1 23 0 2450 87 0 0 chr1 6542154 6542465 -275651199 + AluY SINE Alu 1 311 0 575 183 15 44 chr1 6542484 6542621 -275651043 + L1ME1 LINE L1 6029 6161 -5 2325 91 3 0 chr1 6542629 6542925 -275650739 + AluSx SINE Alu 1 297 -15 2386 75 0 25 chr1 6542928 6543247 -275650417 + AluY SINE Alu 1 311 0 637 302 36 18 chr1 6543507 6543732 -275649932 + MIR SINE MIR 28 256 -6 2094 128 0 19 chr1 6544069 6544381 -275649283 + AluSx SINE Alu 1 306 -6 200 336 119 0 chr1 6544543 6544677 -275648987 + MIR SINE MIR 105 254 -8 2490 82 0 0 chr1 6544682 6544985 -275648679 + AluSc SINE Alu 1 303 -6 242 201 69 90 chr1 6546231 6546375 -275647289 + Charlie7 DNA MER1_type 2429 2569 -43 408 262 112 15 chr1 6549201 6549350 -275644314 + MIR3 SINE MIR 11 181 -27 405 39 0 0 chr1 6550426 6550477 -275643187 + (TG)n Simple_repeat Simple_repeat 1 51 0 541 239 114 22 chr1 6552483 6552667 -275640997 - MIR SINE MIR -10 252 52 303 195 149 15 chr1 6552858 6552947 -275640717 - MIR SINE MIR -90 118 34 1712 213 79 14 chr1 6553129 6553561 -275640103 + L1MC4 LINE L1 7434 7893 -149 877 190 0 39 chr1 6554155 6554334 -275639330 + FRAM SINE Alu 2 173 -3 1733 177 0 7 chr1 6554339 6554621 -275639043 + AluJb SINE Alu 9 288 -24 25 0 0 0 chr1 6554621 6554646 -275639018 + AT_rich Low_complexity Low_complexity 1 25 0 276 209 189 3 chr1 6554651 6554753 -275638911 + MIR SINE MIR 62 187 -21 2244 120 0 0 chr1 6554905 6555214 -275638450 - AluSx SINE Alu 0 312 4 953 209 6 0 chr1 6555475 6555633 -275638031 + FRAM SINE Alu 1 159 -7 561 247 93 16 chr1 6556820 6557014 -275636650 - L2 LINE L2 -1 3312 3104 190 318 101 47 chr1 6557070 6557134 -275636530 + MIR3 SINE MIR 10 69 -139 802 184 133 6 chr1 6557134 6557292 -275636372 + MER5B DNA MER1_type 1 178 0 190 318 101 47 chr1 6557292 6557356 -275636308 + MIR3 SINE MIR 69 145 -63 424 224 51 0 chr1 6557430 6557528 -275636136 - MER5A DNA MER1_type -83 106 4 1893 165 3 0 chr1 6557768 6558065 -275635599 + AluJo SINE Alu 1 298 -14 646 272 163 20 chr1 6558653 6559002 -275634662 - MLT1J2 LTR MaLR -51 399 1 216 326 22 33 chr1 6559195 6559287 -275634377 + L2 LINE L2 3223 3313 0 1044 121 0 36 chr1 6559493 6559659 -275634005 + FRAM SINE Alu 8 167 -9 212 152 76 0 chr1 6559869 6559935 -275633729 + (TTAA)n Simple_repeat Simple_repeat 4 74 0 203 301 119 42 chr1 6560873 6561016 -275632648 - MIR SINE MIR -50 212 59 198 245 38 0 chr1 6562031 6562084 -275631580 - MIR SINE MIR -50 212 158 1412 246 128 33 chr1 6562400 6562458 -275631206 + MLT1E LTR MaLR 2 53 -540 2373 66 7 0 chr1 6562458 6562747 -275630917 - AluY SINE Alu -20 291 1 1412 246 128 33 chr1 6562747 6563229 -275630435 + MLT1E LTR MaLR 53 593 0 202 340 98 12 chr1 6563381 6563625 -275630039 + L2 LINE L2 1912 2176 -1138 315 184 19 48 chr1 6563716 6563819 -275629845 + LTR33 LTR ERVL 19 118 -403 2461 99 0 0 chr1 6563945 6564257 -275629407 + AluSq SINE Alu 1 312 -1 220 242 208 17 chr1 6564283 6564403 -275629261 + L2 LINE L2 2368 2510 -804 207 0 0 0 chr1 6564521 6564544 -275629120 + (TTCA)n Simple_repeat Simple_repeat 1 23 0 218 296 156 15 chr1 6565171 6565306 -275628358 + L2 LINE L2 2906 3059 -213 2126 71 0 11 chr1 6565534 6565800 -275627864 - AluSc SINE Alu -12 297 35 300 202 394 0 chr1 6566232 6566331 -275627333 + L2 LINE L2 3134 3271 -1 21 36 0 0 chr1 6566415 6566443 -275627221 + AT_rich Low_complexity Low_complexity 1 28 0 3267 180 7 25 chr1 6566820 6567463 -275626201 + L1ME1 LINE L1 4560 5192 -954 1489 199 7 20 chr1 6567463 6567760 -275625904 + AluJb SINE Alu 1 293 -19 3267 180 7 25 chr1 6567760 6567793 -275625871 + L1ME1 LINE L1 5192 5224 -922 3403 199 15 71 chr1 6567816 6568418 -275625246 + L1ME1 LINE L1 5224 5738 -428 824 120 17 8 chr1 6568418 6568535 -275625129 + FLAM_C SINE Alu 1 118 -15 3403 199 15 71 chr1 6568535 6568933 -275624731 + L1ME1 LINE L1 5738 6157 -9 1571 175 0 92 chr1 6568955 6569096 -275624568 + AluJo SINE Alu 1 153 -159 1971 91 18 14 chr1 6569096 6569372 -275624292 - AluSq SINE Alu -36 277 1 1571 175 0 92 chr1 6569372 6569568 -275624096 + AluJo SINE Alu 153 307 -5 1813 146 0 45 chr1 6570224 6570532 -275623132 + AluJb SINE Alu 1 294 -18 615 159 62 0 chr1 6571591 6571704 -275621960 - L1MB3 LINE L1 0 6183 6064 1941 143 0 16 chr1 6572843 6573150 -275620514 - AluJo SINE Alu -10 302 1 1017 132 86 17 chr1 6573398 6573572 -275620092 + MER44D DNA MER2_type 1 456 -153 221 286 0 32 chr1 6573592 6573655 -275620009 - L3 LINE CR1 -21 1556 1496 1603 166 32 11 chr1 6573904 6574187 -275619477 + AluJo SINE Alu 1 289 -23 27 62 0 0 chr1 6574187 6574235 -275619429 + AT_rich Low_complexity Low_complexity 1 48 0 2655 33 0 0 chr1 6574385 6574688 -275618976 + AluYb8 SINE Alu 9 311 -7 955 133 106 0 chr1 6574688 6574839 -275618825 + AluY SINE Alu 133 299 -12 2052 117 31 0 chr1 6574985 6575276 -275618388 + AluSq SINE Alu 1 300 -13 33 43 0 0 chr1 6575309 6575356 -275618308 + AT_rich Low_complexity Low_complexity 1 47 0 2217 108 0 22 chr1 6575589 6575904 -275617760 + AluSx SINE Alu 4 311 -1 1680 167 39 0 chr1 6575912 6576193 -275617471 + AluJb SINE Alu 1 292 -20 1893 137 29 13 chr1 6576836 6577143 -275616521 + AluJb SINE Alu 1 312 0 1650 174 0 27 chr1 6577778 6578077 -275615587 + AluJo SINE Alu 1 291 -21 207 125 0 0 chr1 6578348 6578388 -275615276 + (A)n Simple_repeat Simple_repeat 1 40 0 2035 109 48 14 chr1 6581011 6581305 -275612359 + AluSx SINE Alu 1 304 -8 23 0 0 0 chr1 6582133 6582156 -275611508 + AT_rich Low_complexity Low_complexity 1 23 0 306 0 0 0 chr1 6582859 6582893 -275610771 + (CA)n Simple_repeat Simple_repeat 2 35 0 2212 105 3 59 chr1 6583140 6583464 -275610200 + AluSx SINE Alu 1 306 -6 253 235 0 0 chr1 6583539 6583590 -275610074 + L2 LINE L2 3220 3270 -2 273 57 0 0 chr1 6585075 6585110 -275608554 + (GGGA)n Simple_repeat Simple_repeat 3 37 0 22 35 0 0 chr1 6588406 6588435 -275605229 + GC_rich Low_complexity Low_complexity 1 29 0 947 262 24 31 chr1 6589319 6589659 -275604005 + L1MC4a LINE L1 5480 5806 -315 2071 144 0 3 chr1 6589778 6590076 -275603588 + AluSq SINE Alu 1 297 -16 2334 93 3 0 chr1 6590195 6590486 -275603178 - AluSp SINE Alu -21 292 1 983 188 96 50 chr1 6590743 6590780 -275602884 + Charlie1b DNA MER1_type 35 69 -2692 1825 168 7 0 chr1 6590780 6591065 -275602599 - AluJo SINE Alu -25 287 1 983 188 96 50 chr1 6591065 6591330 -275602334 + Charlie1b DNA MER1_type 69 351 -172 1147 168 96 0 chr1 6591330 6591538 -275602126 - AluJb SINE Alu -4 308 81 2225 83 4 0 chr1 6591540 6591816 -275601848 - AluSg SINE Alu -33 277 1 249 226 0 0 chr1 6591824 6591877 -275601787 + Charlie1b DNA MER1_type 471 523 0 2201 111 3 3 chr1 6592348 6592645 -275601019 + AluSg SINE Alu 1 297 -13 438 110 41 0 chr1 6592791 6592864 -275600800 - L1MD1 LINE L1 -14 6228 6153 2028 149 3 3 chr1 6593105 6593407 -275600257 + AluSx SINE Alu 1 302 -10 2179 104 0 35 chr1 6593891 6594209 -275599455 - AluSc SINE Alu -1 308 2 370 301 100 48 chr1 6594818 6594854 -275598810 + L1MC4a LINE L1 5793 5826 -1982 1787 133 26 48 chr1 6594854 6595163 -275598501 + AluSx SINE Alu 1 302 -10 370 301 100 48 chr1 6595163 6595375 -275598289 + L1MC4a LINE L1 5826 6054 -1754 959 255 120 32 chr1 6595416 6595636 -275598028 - L2 LINE L2 0 3313 3114 2472 90 3 3 chr1 6595636 6595948 -275597716 - AluSx SINE Alu 0 312 1 959 255 120 32 chr1 6595948 6596341 -275597323 - L2 LINE L2 -199 3114 2578 1721 182 95 52 chr1 6596341 6596710 -275596954 - MLT1D LTR MaLR -1 504 108 1882 156 0 0 chr1 6596710 6596985 -275596679 - AluSx SINE Alu -37 275 1 1721 182 95 52 chr1 6596985 6597098 -275596566 - MLT1D LTR MaLR -397 108 1 747 148 6 119 chr1 6597107 6597283 -275596381 - MER58A DNA MER1_type -22 202 47 1105 238 52 58 chr1 6597292 6597692 -275595972 - L2 LINE L2 -725 2589 2192 1766 156 61 10 chr1 6597907 6598202 -275595462 - AluJb SINE Alu -2 310 1 1122 82 0 0 chr1 6598202 6598337 -275595327 - AluSq/x SINE Alu -177 135 1 1220 135 0 11 chr1 6598351 6598536 -275595128 + FRAM SINE Alu 1 176 0 981 199 38 9 chr1 6598536 6598747 -275594917 + MLT1A2 LTR MaLR 158 374 0 1036 203 31 8 chr1 6598995 6599251 -275594413 - MER44D DNA MER2_type 0 605 289 549 236 159 13 chr1 6602995 6603152 -275590512 - MER5A DNA MER1_type -6 183 4 2967 63 15 5 chr1 6603335 6603732 -275589932 + MLT2A1 LTR ERVL 1 401 -43 243 109 16 31 chr1 6603732 6603796 -275589868 + (TA)n Simple_repeat Simple_repeat 1 63 0 1247 96 0 12 chr1 6604097 6604264 -275589400 + AluSp SINE Alu 149 313 0 633 237 37 93 chr1 6604787 6604851 -275588813 + MIR SINE MIR 47 113 -149 1920 161 3 3 chr1 6604851 6605155 -275588509 - AluJb SINE Alu -2 310 7 633 237 37 93 chr1 6605155 6605305 -275588359 + MIR SINE MIR 113 249 -13 1491 108 45 9 chr1 6605305 6605422 -275588242 + MER30 DNA MER1_type 1 112 -118 2217 119 7 0 chr1 6605422 6605716 -275587948 + AluSx SINE Alu 1 296 -16 1491 108 45 9 chr1 6605716 6605820 -275587844 + MER30 DNA MER1_type 112 230 0 228 35 0 0 chr1 6606015 6606044 -275587620 + (TA)n Simple_repeat Simple_repeat 1 29 0 229 56 111 0 chr1 6606044 6606080 -275587584 + MLT2A1 LTR ERVL 405 444 0 339 302 95 9 chr1 6606185 6606301 -275587363 + MIR3 SINE MIR 12 137 -71 2065 188 26 75 chr1 6606313 6606406 -275587258 + MLT1D LTR MaLR 1 97 -408 2346 116 3 0 chr1 6606406 6606717 -275586947 - AluSx SINE Alu 0 312 1 2065 188 26 75 chr1 6606717 6607154 -275586510 + MLT1D LTR MaLR 97 505 0 1923 128 52 3 chr1 6607198 6607486 -275586178 + AluSq SINE Alu 9 310 -3 396 0 0 0 chr1 6607946 6607990 -275585674 + (CA)n Simple_repeat Simple_repeat 1 44 0 760 189 0 24 chr1 6608002 6608129 -275585535 + FLAM_C SINE Alu 2 125 -18 4564 23 0 0 chr1 6608287 6608785 -275584879 + SVA Other Other 897 1394 0 25 0 0 0 chr1 6608785 6608810 -275584854 + AT_rich Low_complexity Low_complexity 1 25 0 2430 61 0 0 chr1 6608825 6609125 -275584539 + AluY SINE Alu 1 300 0 409 195 34 119 chr1 6609126 6609165 -275584499 - Tigger7 DNA MER2_type -594 111 70 1749 201 3 0 chr1 6609165 6609463 -275584201 - AluJo SINE Alu -13 299 1 409 195 34 119 chr1 6609463 6609541 -275584123 - Tigger7 DNA MER2_type -635 70 4 2200 126 10 0 chr1 6609676 6609985 -275583679 - AluSx SINE Alu 0 312 1 2574 47 0 3 chr1 6609995 6610294 -275583370 - AluY SINE Alu -13 298 1 384 284 13 52 chr1 6610417 6610572 -275583092 + HAL1 LINE L1 39 187 -2320 231 202 111 40 chr1 6610641 6610740 -275582924 + HAL1 LINE L1 349 454 -2053 513 263 145 63 chr1 6611219 6611429 -275582235 - HAL1 LINE L1 -428 2079 1831 1796 172 0 23 chr1 6611429 6611731 -275581933 - AluJo SINE Alu -17 295 1 513 263 145 63 chr1 6611731 6611851 -275581813 - HAL1 LINE L1 -676 1831 1722 2277 82 10 13 chr1 6612680 6612984 -275580680 + AluSq SINE Alu 1 303 -10 1793 150 56 3 chr1 6613009 6613295 -275580369 - AluSx SINE Alu -11 301 1 2424 89 0 3 chr1 6613579 6613883 -275579781 + AluSx SINE Alu 1 303 -9 217 262 49 0 chr1 6614450 6614511 -275579153 - MIR SINE MIR -99 109 46 1549 212 7 13 chr1 6614552 6614854 -275578810 + AluJo SINE Alu 1 300 -12 238 276 67 29 chr1 6614904 6615009 -275578655 + L2 LINE L2 2697 2805 -509 2284 105 0 29 chr1 6615022 6615337 -275578327 - AluSg SINE Alu -4 306 1 198 303 50 67 chr1 6615337 6615456 -275578208 - MIR SINE MIR -113 149 33 1353 180 12 16 chr1 6615667 6615917 -275577747 + AluJo SINE Alu 50 298 -14 213 307 88 44 chr1 6616327 6616464 -275577200 - L2 LINE L2 -62 3210 3068 1918 124 47 0 chr1 6616497 6616771 -275576893 - AluSx SINE Alu -25 287 1 942 130 0 0 chr1 6616814 6616968 -275576696 + (TG)n Simple_repeat Simple_repeat 1 154 0 370 185 23 108 chr1 6617324 6617402 -275576262 - MER45A DNA AcHobo -1405 176 112 1744 162 7 10 chr1 6617402 6617692 -275575972 + AluJo SINE Alu 12 300 -12 370 185 23 108 chr1 6617692 6617743 -275575921 - MER45A DNA AcHobo -1469 112 58 322 223 64 0 chr1 6617871 6617965 -275575699 - MLT1L LTR MaLR -13 602 503 2315 105 3 10 chr1 6618588 6618902 -275574762 + AluSx SINE Alu 1 312 0 1020 112 0 87 chr1 6618996 6619023 -275574641 + L1PA16 LINE L1 5806 5834 -332 1619 116 39 4 chr1 6619023 6619256 -275574408 - AluSx SINE Alu -14 298 58 1020 112 0 87 chr1 6619256 6619424 -275574240 + L1PA16 LINE L1 5834 5984 -182 1562 154 65 31 chr1 6619424 6619716 -275573948 + AluJo SINE Alu 1 302 -10 1117 116 15 30 chr1 6619745 6619943 -275573721 + L1PA16 LINE L1 5971 6165 -1 2659 32 3 13 chr1 6620329 6620643 -275573021 - AluY SINE Alu 0 311 1 416 182 0 0 chr1 6621584 6621650 -275572014 + AluJ/FLAM SINE Alu 13 78 -234 1682 107 0 21 chr1 6621685 6621919 -275571745 - AluSx SINE Alu -83 229 1 736 129 0 0 chr1 6621919 6622020 -275571644 + AluSg/x SINE Alu 186 286 -23 961 240 81 3 chr1 6622060 6622129 -275571535 + L1M4 LINE L1 3437 3499 -2647 390 21 0 0 chr1 6622129 6622176 -275571488 + (CA)n Simple_repeat Simple_repeat 2 48 0 961 240 81 3 chr1 6622176 6622414 -275571250 + L1M4 LINE L1 3499 3768 -2378 2344 109 0 0 chr1 6622465 6622777 -275570887 + AluSx SINE Alu 1 312 0 1887 156 0 22 chr1 6622787 6623101 -275570563 + AluJo SINE Alu 5 311 -1 386 160 117 0 chr1 6623113 6623207 -275570457 + L1M4 LINE L1 4495 4599 -1547 524 131 20 20 chr1 6623207 6623306 -275570358 - LTR24B LTR ERV1 -440 136 38 1109 192 28 17 chr1 6623311 6623602 -275570062 + L1M4 LINE L1 5008 5301 -845 1598 115 0 25 chr1 6623758 6623993 -275569671 - AluSx SINE Alu -83 229 1 1075 105 0 0 chr1 6623993 6624126 -275569538 - AluSg SINE Alu -177 133 1 270 0 0 0 chr1 6624299 6624329 -275569335 + (TG)n Simple_repeat Simple_repeat 1 30 0 939 170 0 0 chr1 6624334 6624475 -275569189 - FRAM SINE Alu -32 144 4 2464 58 0 3 chr1 6624787 6625155 -275568509 + AluY SINE Alu 1 311 0 1930 152 7 0 chr1 6625680 6625989 -275567675 - AluJb SINE Alu -1 311 1 900 104 49 0 chr1 6625989 6626133 -275567531 - MLT1B LTR MaLR -211 179 29 246 185 56 19 chr1 6626177 6626285 -275567379 + (TA)n Simple_repeat Simple_repeat 1 112 0 34 24 0 0 chr1 6627529 6627570 -275566094 + AT_rich Low_complexity Low_complexity 1 41 0 348 149 0 15 chr1 6628091 6628158 -275565506 - MLT1B LTR MaLR -1 389 324 1457 138 29 72 chr1 6628163 6628439 -275565225 + AluJb SINE Alu 5 268 -44 328 232 58 14 chr1 6628445 6628514 -275565150 + L1MC4 LINE L1 6632 6703 -1339 649 200 4 109 chr1 6628632 6628862 -275564802 + L1MB7 LINE L1 5968 6173 -11 1414 135 38 4 chr1 6628988 6629225 -275564439 - THE1C LTR MaLR 0 375 131 334 161 0 0 chr1 6629222 6629278 -275564386 + AluJb SINE Alu 247 302 0 * 368 125 16 0 chr1 6629284 6629348 -275564316 + GA-rich Low_complexity Low_complexity 3 67 0 348 154 0 0 chr1 6629350 6629402 -275564262 + Alu SINE Alu 238 289 -13 * 528 134 67 148 chr1 6629388 6629537 -275564127 - THE1C LTR MaLR -238 137 1 3449 130 29 4 chr1 6629692 6630247 -275563417 - LTR24B LTR ERV1 -7 569 1 2181 117 0 7 chr1 6630305 6630604 -275563060 - AluSx SINE Alu -15 297 1 1892 164 0 19 chr1 6631864 6632175 -275561489 - AluJo SINE Alu -7 305 1 2309 89 7 0 chr1 6632198 6632489 -275561175 - AluSx SINE Alu -17 295 3 1679 126 28 82 chr1 6632520 6632821 -275560843 + L1MB3 LINE L1 5840 6121 -62 2246 94 3 0 chr1 6632821 6633109 -275560555 + AluSp SINE Alu 6 294 -19 1679 126 28 82 chr1 6633109 6633163 -275560501 + L1MB3 LINE L1 6121 6176 -7 1979 158 3 3 chr1 6633178 6633481 -275560183 + AluJb SINE Alu 1 303 -9 2199 92 20 7 chr1 6633481 6633774 -275559890 + AluSx SINE Alu 1 297 -15 277 81 0 0 chr1 6633774 6633811 -275559853 - MLT1B LTR MaLR -232 158 122 1205 143 0 6 chr1 6633815 6633990 -275559674 - AluSq SINE Alu -7 306 133 550 122 61 43 chr1 6633991 6634106 -275559558 - MLT1B LTR MaLR -273 117 1 938 196 13 70 chr1 6634172 6634402 -275559262 - MER20 DNA MER1_type -2 217 1 1073 308 68 75 chr1 6634545 6634641 -275559023 - L2 LINE L2 -1 3312 3217 2215 106 3 37 chr1 6634641 6634963 -275558701 - AluSx SINE Alu -1 311 1 1073 308 68 75 chr1 6634963 6635145 -275558519 - L2 LINE L2 -96 3217 3035 1617 118 0 0 chr1 6635145 6635366 -275558298 - AluSg/x SINE Alu -15 295 75 1073 308 68 75 chr1 6635366 6636064 -275557600 - L2 LINE L2 -278 3035 2359 612 194 8 8 chr1 6636074 6636203 -275557461 - L1MB3 LINE L1 0 6183 6055 2159 114 3 3 chr1 6636285 6636582 -275557082 + AluSx SINE Alu 1 297 -15 382 264 91 0 chr1 6636584 6636705 -275556959 - MER94 DNA DNA 0 134 3 2515 112 117 5 chr1 6637544 6637929 -275555735 + MSTA LTR MaLR 1 428 0 1230 217 110 35 chr1 6638177 6638606 -275555058 - MLT1C LTR MaLR -1 466 6 2071 71 26 15 chr1 6638659 6638927 -275554737 + AluSg SINE Alu 35 305 -5 866 175 0 138 chr1 6639396 6639534 -275554130 + AluSx SINE Alu 1 92 -220 2357 112 0 0 chr1 6639534 6639846 -275553818 + AluSx SINE Alu 1 312 0 866 175 0 138 chr1 6639846 6639953 -275553711 + AluSx SINE Alu 92 212 -100 28 0 0 0 chr1 6639990 6640018 -275553646 + AT_rich Low_complexity Low_complexity 1 28 0 1971 141 13 13 chr1 6640618 6640924 -275552740 + AluJo SINE Alu 3 308 -4 1080 71 0 57 chr1 6641014 6641155 -275552509 + AluSq/x SINE Alu 1 133 -179 2217 96 0 4 chr1 6641165 6641445 -275552219 + AluSg SINE Alu 1 279 -31 1061 145 6 17 chr1 6642063 6642235 -275551429 - FRAM SINE Alu -6 170 1 2140 96 0 31 chr1 6642247 6642428 -275551236 - AluSx SINE Alu 0 307 137 2760 32 0 10 chr1 6642428 6642742 -275550922 - AluY SINE Alu 0 311 1 2140 96 0 31 chr1 6642742 6642872 -275550792 - AluSx SINE Alu -170 137 5 302 268 107 0 chr1 6642985 6643097 -275550567 + L2 LINE L2 3190 3313 0 978 171 0 0 chr1 6643172 6643324 -275550340 + FRAM SINE Alu 2 153 -23 31 44 0 0 chr1 6643324 6643369 -275550295 + AT_rich Low_complexity Low_complexity 1 45 0 696 192 0 0 chr1 6643388 6643513 -275550151 - MLT1B LTR MaLR 0 390 266 2185 113 7 3 chr1 6643530 6643840 -275549824 - AluSq SINE Alu -2 311 1 235 315 95 0 chr1 6644102 6644211 -275549453 + MIR SINE MIR 59 179 -29 207 0 0 0 chr1 6644575 6644598 -275549066 + (A)n Simple_repeat Simple_repeat 1 23 0 1754 186 0 38 chr1 6644713 6645030 -275548634 + AluJo SINE Alu 1 305 -7 2220 96 27 7 chr1 6645261 6645553 -275548111 + AluSx SINE Alu 1 298 -14 2202 119 0 0 chr1 6645564 6645857 -275547807 + AluSx SINE Alu 1 293 -19 226 274 65 65 chr1 6646228 6646381 -275547283 - L2 LINE L2 0 3313 3161 500 290 6 33 chr1 6646454 6646544 -275547120 + MIR SINE MIR 14 98 -164 2326 119 129 5 chr1 6646544 6646923 -275546741 - MSTA LTR MaLR -2 426 1 500 290 6 33 chr1 6646923 6647015 -275546649 + MIR SINE MIR 98 191 -71 3888 171 12 34 chr1 6647433 6647480 -275546184 + L1MB3 LINE L1 5445 5491 -692 1959 109 64 7 chr1 6647480 6647763 -275545901 + AluSx SINE Alu 1 299 -13 3888 171 12 34 chr1 6647763 6648175 -275545489 + L1MB3 LINE L1 5491 5884 -299 1775 146 56 3 chr1 6648175 6648463 -275545201 + AluSq SINE Alu 2 304 -9 3888 171 12 34 chr1 6648463 6648749 -275544915 + L1MB3 LINE L1 5884 6175 -8 1954 147 13 7 chr1 6648846 6649153 -275544511 + AluJb SINE Alu 1 309 -3 503 168 30 59 chr1 6649435 6649536 -275544128 + AluJo/FLAM SINE Alu 30 127 -185 2363 81 0 26 chr1 6649536 6649844 -275543820 + AluY SINE Alu 1 300 -11 474 158 0 13 chr1 6650368 6650444 -275543220 + MER5A DNA MER1_type 1 75 -114 2310 104 3 3 chr1 6650444 6650743 -275542921 + AluSx SINE Alu 1 299 -13 873 154 8 0 chr1 6650757 6650887 -275542777 + FLAM_C SINE Alu 5 135 -8 2560 75 3 0 chr1 6651311 6651619 -275542045 - AluSp SINE Alu -4 309 1 1761 151 6 58 chr1 6651621 6651786 -275541878 - AluJb SINE Alu -16 296 124 240 35 0 0 chr1 6651786 6651815 -275541849 + (TTTTC)n Simple_repeat Simple_repeat 2 30 0 1943 134 4 7 chr1 6651817 6652094 -275541570 - AluSx SINE Alu -29 283 8 1761 151 6 58 chr1 6652094 6652237 -275541427 - AluJb SINE Alu -189 123 1 2382 94 3 0 chr1 6652425 6652723 -275540941 - AluSx SINE Alu -13 299 1 1649 183 0 24 chr1 6652811 6652976 -275540688 - AluJo SINE Alu -14 298 142 2717 36 0 0 chr1 6652976 6653277 -275540387 - AluY SINE Alu -10 301 1 1649 183 0 24 chr1 6653277 6653406 -275540258 - AluJo SINE Alu -170 142 11 728 199 22 7 chr1 6653407 6653543 -275540121 - AluJo SINE Alu -173 139 2 2103 100 3 3 chr1 6653882 6654181 -275539483 + AluSx SINE Alu 1 299 -13 644 167 17 8 chr1 6654281 6654401 -275539263 + MER101 LTR ERV1 354 474 0 * 806 178 67 54 chr1 6654401 6654806 -275538858 + Charlie1 DNA MER1_type 175 2739 -22 263 170 38 0 chr1 6654875 6654928 -275538736 + Charlie1 DNA MER1_type 2707 2761 0 * 888 266 110 30 chr1 6654928 6655290 -275538374 - MLT1I LTR MaLR -16 393 3 2600 53 0 3 chr1 6655907 6656208 -275537456 - AluY SINE Alu -11 300 1 471 256 64 8 chr1 6657425 6657550 -275536114 - L2 LINE L2 -4 3268 3137 229 377 91 32 chr1 6657592 6657966 -275535698 - L2 LINE L2 -502 2812 2417 2029 84 55 4 chr1 6658067 6658341 -275535323 + AluSp SINE Alu 11 298 -15 309 294 69 0 chr1 6658521 6658623 -275535041 - MIR SINE MIR -66 196 88 291 311 198 6 chr1 6658885 6659052 -275534612 - MIR SINE MIR -43 219 21 1751 59 0 0 chr1 6659196 6659398 -275534266 + AluY SINE Alu 3 204 -107 2445 93 0 0 chr1 6661161 6661463 -275532201 - AluSp SINE Alu -11 302 1 2046 126 7 27 chr1 6661465 6661766 -275531898 - AluSx SINE Alu -17 295 1 2210 120 0 10 chr1 6661925 6662234 -275531430 - AluSg SINE Alu -4 306 1 23 0 0 0 chr1 6662234 6662257 -275531407 + AT_rich Low_complexity Low_complexity 1 23 0 628 198 0 0 chr1 6662270 6662371 -275531293 - FRAM SINE Alu -24 152 52 797 157 119 27 chr1 6662371 6662387 -275531277 + LTR36 LTR ERV1 3 16 -595 2176 119 13 3 chr1 6662387 6662690 -275530974 - AluSx SINE Alu -6 306 1 797 157 119 27 chr1 6662690 6662858 -275530806 + LTR36 LTR ERV1 16 204 -407 822 234 172 7 chr1 6662892 6663165 -275530499 + LTR36 LTR ERV1 294 611 0 21 0 0 0 chr1 6663216 6663237 -275530427 + AT_rich Low_complexity Low_complexity 1 21 0 2439 64 0 32 chr1 6663237 6663549 -275530115 + AluY SINE Alu 1 302 -9 1285 81 12 0 chr1 6663551 6663712 -275529952 + AluY SINE Alu 135 297 -14 760 158 0 47 chr1 6663712 6663839 -275529825 - AluJo/FLAM SINE Alu -181 131 11 180 298 35 114 chr1 6663899 6664058 -275529606 - MIR SINE MIR 0 262 129 2211 116 0 20 chr1 6664058 6664361 -275529303 + AluSg SINE Alu 1 297 -13 180 298 35 114 chr1 6664361 6664456 -275529208 - MIR SINE MIR -133 129 28 244 336 79 14 chr1 6664489 6664614 -275529050 - MIR SINE MIR -61 147 33 1800 123 38 131 chr1 6665861 6666228 -275527436 - MER1B DNA MER1_type -4 333 1 2330 43 54 0 chr1 6666346 6666625 -275527039 - AluY SINE Alu -17 294 1 1750 115 4 8 chr1 6667196 6667440 -275526224 + AluSq SINE Alu 1 243 -70 241 200 40 0 chr1 6667442 6667492 -275526172 + L2 LINE L2 2984 3035 -278 1847 157 23 7 chr1 6667492 6667797 -275525867 - AluJo SINE Alu -2 310 1 941 165 18 29 chr1 6667807 6667977 -275525687 - FRAM SINE Alu -8 168 1 635 246 68 85 chr1 6667977 6668040 -275525624 + L2 LINE L2 3020 3083 -230 1944 161 0 3 chr1 6668040 6668339 -275525325 + AluJo SINE Alu 1 298 -14 635 246 68 85 chr1 6668339 6668568 -275525096 + L2 LINE L2 3083 3307 -6 439 186 74 147 chr1 6668716 6669050 -275524614 + LTR37B LTR ERV1 118 459 -9 2276 84 7 0 chr1 6669059 6669345 -275524319 + AluSg SINE Alu 1 288 -22 1511 161 0 29 chr1 6669445 6669718 -275523946 + AluJo SINE Alu 44 308 -4 2232 103 7 3 chr1 6670109 6670409 -275523255 - AluSg SINE Alu -9 301 1 2180 122 0 10 chr1 6670436 6670727 -275522937 + AluSx SINE Alu 1 290 -22 225 0 0 0 chr1 6670727 6670752 -275522912 + (TAGA)n Simple_repeat Simple_repeat 4 28 0 2180 122 0 10 chr1 6670752 6670764 -275522900 + AluSx SINE Alu 290 301 -11 2646 55 0 0 chr1 6670967 6671274 -275522390 + AluY SINE Alu 1 307 -4 21 0 0 0 chr1 6672723 6672744 -275520920 + GC_rich Low_complexity Low_complexity 1 21 0 227 188 0 14 chr1 6672876 6672945 -275520719 + (CCCGAA)n Simple_repeat Simple_repeat 3 70 0 2316 97 0 10 chr1 6673267 6673576 -275520088 - AluSc SINE Alu -1 308 3 362 269 161 47 chr1 6673618 6673811 -275519853 - MIR SINE MIR -12 250 36 2318 111 0 0 chr1 6674026 6674324 -275519340 + AluSx SINE Alu 1 298 -14 212 262 0 0 chr1 6674326 6674368 -275519296 + polypurine Low_complexity Low_complexity 5 46 0 910 181 165 0 chr1 6674368 6674550 -275519114 + AluSx SINE Alu 1 212 -100 650 140 0 0 chr1 6674555 6674648 -275519016 + AluSp SINE Alu 141 233 -80 197 33 33 0 chr1 6674659 6674689 -275518975 + (TAAA)n Simple_repeat Simple_repeat 2 32 0 660 70 0 0 chr1 6674708 6674794 -275518870 + L1PA10 LINE L1 5805 5890 -278 313 81 6 0 chr1 6674794 6674852 -275518812 + Alu SINE Alu 1 40 -260 1407 138 73 19 chr1 6674852 6675079 -275518585 - L1PA11 LINE L1 -24 6150 5906 2528 58 0 13 chr1 6675079 6675388 -275518276 - AluY SINE Alu -6 305 1 1407 138 73 19 chr1 6675388 6675420 -275518244 - L1PA11 LINE L1 -268 5906 5877 2156 107 10 10 chr1 6675737 6676047 -275517617 + AluSx SINE Alu 1 310 -2 1633 177 38 3 chr1 6676316 6676604 -275517060 - AluJb SINE Alu -14 298 1 1940 253 196 25 chr1 6676710 6677774 -275515890 - L2 LINE L2 -787 2527 1283 310 310 31 0 chr1 6678091 6678220 -275515444 - HAL1 LINE L1 -873 1634 1502 1186 127 0 33 chr1 6678234 6678415 -275515249 - AluSg/x SINE Alu -1 309 135 216 320 13 13 chr1 6678823 6678901 -275514763 - L2 LINE L2 -773 2541 2464 225 94 0 0 chr1 6679637 6679669 -275513995 + (TG)n Simple_repeat Simple_repeat 2 33 0 1356 128 59 0 chr1 6679669 6679873 -275513791 - AluJo SINE Alu -27 285 70 1543 185 0 58 chr1 6679886 6680048 -275513616 - AluJo SINE Alu -17 295 158 2207 114 14 0 chr1 6680048 6680338 -275513326 - AluSx SINE Alu -18 294 1 1543 185 0 58 chr1 6680338 6680483 -275513181 - AluJo SINE Alu -154 158 6 716 219 7 0 chr1 6680526 6680687 -275512977 + FRAM SINE Alu 9 170 0 2291 78 14 0 chr1 6680689 6680984 -275512680 + AluY SINE Alu 3 301 -10 1846 159 21 0 chr1 6680984 6681273 -275512391 + AluJo SINE Alu 1 295 -17 1067 73 0 0 chr1 6681297 6681420 -275512244 + AluSq/x SINE Alu 13 135 -178 2282 100 0 0 chr1 6681420 6681711 -275511953 + AluY SINE Alu 1 291 -20 2188 100 7 13 chr1 6681714 6682013 -275511651 + AluY SINE Alu 1 297 -14 280 241 114 0 chr1 6682622 6682701 -275510963 - L1MD3 LINE L1 -93 7902 7815 2018 117 10 10 chr1 6682703 6682994 -275510670 + AluSx SINE Alu 9 299 -13 1193 140 6 0 chr1 6682994 6683165 -275510499 + AluSg/x SINE Alu 134 305 -7 239 200 0 0 chr1 6683167 6683212 -275510452 - L1MC4a LINE L1 -150 7658 7614 417 161 0 37 chr1 6683242 6683323 -275510341 - U6 snRNA snRNA -29 78 1 2006 135 3 14 chr1 6683335 6683632 -275510032 - AluSx SINE Alu -18 294 1 379 127 0 0 chr1 6683652 6683707 -275509957 + AluJb SINE Alu 94 148 -154 2568 73 0 0 chr1 6683755 6684058 -275509606 + AluYa5 SINE Alu 1 303 -8 967 90 0 0 chr1 6684060 6684182 -275509482 + AluSp/q SINE Alu 170 291 -22 3175 159 58 20 chr1 6684209 6684393 -275509271 - L1MB4 LINE L1 -172 6008 5832 1745 178 13 16 chr1 6684393 6684697 -275508967 + AluJb SINE Alu 1 303 -9 3175 159 58 20 chr1 6684697 6685167 -275508497 - L1MB4 LINE L1 -348 5832 5329 2127 123 38 0 chr1 6685183 6685476 -275508188 - AluSx SINE Alu -8 304 1 2053 84 49 21 chr1 6685482 6685769 -275507895 - AluSq SINE Alu -1 312 18 1222 101 6 22 chr1 6686041 6686059 -275507605 + AluSg/x SINE Alu 118 135 -177 2158 123 3 7 chr1 6686059 6686367 -275507297 + AluSx SINE Alu 1 307 -5 1222 101 6 22 chr1 6686367 6686521 -275507143 + AluSg/x SINE Alu 131 288 -20 237 33 0 0 chr1 6686521 6686551 -275507113 + (CCAA)n Simple_repeat Simple_repeat 2 31 0 353 281 188 12 chr1 6687132 6687292 -275506372 + MIR SINE MIR 57 244 -18 2444 72 0 0 chr1 6687297 6687590 -275506074 - AluY SINE Alu -18 293 1 2437 87 3 0 chr1 6687943 6688242 -275505422 - AluSp SINE Alu -13 300 1 1473 210 4 0 chr1 6688289 6688541 -275505123 + AluJb SINE Alu 1 253 -59 1442 129 42 104 chr1 6688557 6688895 -275504769 + AluSx SINE Alu 1 312 0 660 70 0 0 chr1 6688905 6688991 -275504673 + L1PA10 LINE L1 5805 5890 -278 256 107 30 0 chr1 6688991 6689048 -275504616 + AluJb SINE Alu 117 170 -132 1311 143 82 4 chr1 6689048 6689292 -275504372 - L1PA11 LINE L1 -24 6150 5888 1236 150 0 0 chr1 6689415 6689602 -275504062 + AluJb SINE Alu 117 303 -9 282 308 14 7 chr1 6690005 6690117 -275503547 - MIR SINE MIR -51 211 100 2344 88 0 14 chr1 6690503 6690800 -275502864 + AluY SINE Alu 1 293 -18 1670 137 12 99 chr1 6690829 6691151 -275502513 + AluJo SINE Alu 1 294 -18 488 222 56 19 chr1 6691164 6691326 -275502338 + L2 LINE L2 2856 3023 -290 246 225 50 38 chr1 6691359 6691439 -275502225 + MIR SINE MIR 75 155 -107 1564 119 5 0 chr1 6692199 6692417 -275501247 + AluSx SINE Alu 1 219 -93 751 130 0 32 chr1 6692417 6692540 -275501124 + AluSg/x SINE Alu 186 304 -6 548 224 133 12 chr1 6692579 6692744 -275500920 - MER58 DNA MER1_type -2177 243 59 736 199 0 22 chr1 6694230 6694366 -275499298 + AluJo SINE Alu 2 134 -178 2113 123 0 0 chr1 6694367 6694644 -275499020 + AluSp SINE Alu 1 277 -36 201 39 0 0 chr1 6694654 6694680 -275498984 + (CAAAA)n Simple_repeat Simple_repeat 2 27 0 2181 84 7 3 chr1 6694680 6694966 -275498698 + AluY SINE Alu 1 287 -24 2303 91 0 26 chr1 6695486 6695656 -275498008 - AluSx SINE Alu -11 301 128 317 86 17 0 chr1 6695656 6695714 -275497950 + (TTTA)n Simple_repeat Simple_repeat 2 60 0 2045 114 4 4 chr1 6695714 6695994 -275497670 - AluSc SINE Alu -29 280 1 2303 91 0 26 chr1 6695994 6696131 -275497533 - AluSx SINE Alu -182 130 1 1585 140 85 51 chr1 6696131 6696287 -275497377 - AluJb SINE Alu -9 303 154 2165 82 4 0 chr1 6696287 6696567 -275497097 - AluY SINE Alu 0 311 31 1585 140 85 51 chr1 6696567 6696703 -275496961 - AluJb SINE Alu -158 154 1 2178 128 7 0 chr1 6696976 6697272 -275496392 + AluSg SINE Alu 1 298 -12 1824 157 14 7 chr1 6697290 6697584 -275496080 + AluSx SINE Alu 5 300 -12 2078 128 21 0 chr1 6697705 6697993 -275495671 + AluSx SINE Alu 5 298 -14 1413 135 24 0 chr1 6698158 6698366 -275495298 - AluSg/x SINE Alu -14 298 86 1816 163 0 14 chr1 6698394 6698689 -275494975 + AluJb SINE Alu 1 291 -21 747 110 0 0 chr1 6698697 6698797 -275494867 + AluS SINE Alu 2 101 -211 2438 82 3 0 chr1 6698961 6699265 -275494399 + AluY SINE Alu 5 309 -2 2072 114 4 0 chr1 6699447 6699754 -275493910 + AluSx SINE Alu 1 308 0 626 250 158 45 chr1 6699761 6700165 -275493499 + HAL1 LINE L1 1382 1831 -676 810 241 22 13 chr1 6700177 6700409 -275493255 + L1ME1 LINE L1 5907 6140 -26 2107 137 38 47 chr1 6700424 6700711 -275492953 + MER65A LTR ERV1 6 289 -156 2324 100 3 13 chr1 6700711 6701021 -275492643 - AluSx SINE Alu -1 311 5 2107 137 38 47 chr1 6701021 6701177 -275492487 + MER65A LTR ERV1 289 445 0 2333 115 0 0 chr1 6701178 6701483 -275492181 - AluSx SINE Alu -6 306 2 390 366 46 6 chr1 6701523 6701698 -275491966 + L1MEd LINE L1 1053 1234 -4971 418 318 8 29 chr1 6701726 6701971 -275491693 + L1MEd LINE L1 1545 1784 -4612 861 214 0 19 chr1 6702158 6702312 -275491352 + FRAM SINE Alu 1 151 -15 375 23 0 0 chr1 6702312 6702356 -275491308 + (GA)n Simple_repeat Simple_repeat 2 45 0 2037 92 100 0 chr1 6702536 6702807 -275490857 + AluSx SINE Alu 1 298 -14 1220 303 85 38 chr1 6702849 6703692 -275489972 + L2 LINE L2 2307 3184 -129 990 171 5 50 chr1 6704691 6704890 -275488774 + AluSg/x SINE Alu 120 309 -1 222 37 0 0 chr1 6704947 6704974 -275488690 + (TG)n Simple_repeat Simple_repeat 2 28 0 1955 151 0 7 chr1 6704989 6705288 -275488376 - AluJb SINE Alu -15 297 1 451 141 0 0 chr1 6705294 6705372 -275488292 + MER53 DNA DNA 111 188 -1 2228 112 0 3 chr1 6705542 6705837 -275487827 + AluSx SINE Alu 1 294 -18 2236 133 0 0 chr1 6705839 6706141 -275487523 + AluSx SINE Alu 1 302 -10 1828 180 6 3 chr1 6706341 6706652 -275487012 + AluJo SINE Alu 1 312 0 2595 63 0 19 chr1 6707158 6707475 -275486189 + AluY SINE Alu 1 311 0 2630 62 0 0 chr1 6707545 6707852 -275485812 + AluSg SINE Alu 1 307 -3 2123 92 23 20 chr1 6708882 6709185 -275484479 + AluSx SINE Alu 1 304 -8 852 288 17 13 chr1 6710606 6710842 -275482822 - MIR SINE MIR -25 237 1 1497 168 58 123 chr1 6710902 6711383 -275482281 - LTR7 LTR ERV1 0 450 1 924 74 0 0 chr1 6711548 6711670 -275481994 - L1PA8 LINE L1 -1 6171 6050 1764 159 35 3 chr1 6712000 6712290 -275481374 - AluJo SINE Alu -13 299 1 270 138 0 0 chr1 6712324 6712382 -275481282 + (TA)n Simple_repeat Simple_repeat 1 58 0 1730 159 0 4 chr1 6712390 6712654 -275481010 - AluJb SINE Alu -49 263 1 27 29 0 0 chr1 6712654 6712688 -275480976 + AT_rich Low_complexity Low_complexity 1 34 0 2316 47 54 0 chr1 6713225 6713504 -275480160 + AluY SINE Alu 1 294 -17 1800 123 38 131 chr1 6713622 6713989 -275479675 + MER1B DNA MER1_type 1 333 -4 244 336 79 14 chr1 6715236 6715361 -275478303 + MIR SINE MIR 33 161 -61 180 298 35 114 chr1 6715394 6715489 -275478175 + MIR SINE MIR 28 129 -133 2139 111 0 57 chr1 6715489 6715804 -275477860 - AluSg SINE Alu -13 297 1 180 298 35 114 chr1 6715804 6715963 -275477701 + MIR SINE MIR 129 262 0 766 156 0 47 chr1 6716023 6716151 -275477513 + AluJo/FLAM SINE Alu 11 132 -180 1314 79 12 0 chr1 6716151 6716315 -275477349 - AluY SINE Alu -11 300 135 2448 64 0 32 chr1 6716317 6716630 -275477034 - AluY SINE Alu -8 303 1 21 0 0 0 chr1 6716630 6716651 -275477013 + AT_rich Low_complexity Low_complexity 1 21 0 822 234 172 7 chr1 6716702 6716975 -275476689 - LTR36 LTR ERV1 0 611 294 797 157 119 27 chr1 6717009 6717177 -275476487 - LTR36 LTR ERV1 -407 204 16 2167 119 13 3 chr1 6717177 6717479 -275476185 + AluSx SINE Alu 1 305 -7 797 157 119 27 chr1 6717479 6717495 -275476169 - LTR36 LTR ERV1 -595 16 3 628 198 0 0 chr1 6717495 6717596 -275476068 + FRAM SINE Alu 52 152 -24 23 0 0 0 chr1 6717609 6717632 -275476032 + AT_rich Low_complexity Low_complexity 1 23 0 2210 120 0 10 chr1 6717632 6717941 -275475723 + AluSg SINE Alu 1 306 -4 2046 126 7 27 chr1 6718100 6718401 -275475263 + AluSx SINE Alu 1 295 -17 2436 93 0 0 chr1 6718403 6718704 -275474960 + AluSp SINE Alu 1 301 -12 1764 55 0 0 chr1 6720467 6720669 -275472995 - AluY SINE Alu -107 204 3 291 311 198 6 chr1 6720813 6720980 -275472684 + MIR SINE MIR 21 219 -43 309 294 69 0 chr1 6721242 6721344 -275472320 + MIR SINE MIR 88 196 -66 2014 88 55 4 chr1 6721524 6721798 -275471866 - AluSp SINE Alu -15 298 11 229 377 91 32 chr1 6721899 6722273 -275471391 + L2 LINE L2 2417 2812 -502 471 256 64 8 chr1 6722315 6722440 -275471224 + L2 LINE L2 3137 3268 -4 2609 53 0 3 chr1 6723657 6723959 -275469705 + AluY SINE Alu 1 301 -10 888 266 110 30 chr1 6724577 6724939 -275468725 + MLT1I LTR MaLR 3 393 -16 263 170 38 0 chr1 6724939 6724992 -275468672 - Charlie1 DNA MER1_type 0 2761 2707 1699 177 57 45 chr1 6725094 6725487 -275468177 - Charlie1 DNA MER1_type -32 2729 2342 2223 168 134 0 chr1 6725487 6725905 -275467759 - MER101 LTR ERV1 0 474 1 1699 177 57 45 chr1 6725905 6726079 -275467585 - Charlie1 DNA MER1_type -419 2342 1 916 155 88 44 chr1 6726147 6726328 -275467336 - AluJo SINE Alu -123 189 1 467 246 9 0 chr1 6726328 6726438 -275467226 - L1M4 LINE L1 -3318 2828 2718 2361 106 0 3 chr1 6726932 6727235 -275466429 + AluSx SINE Alu 1 302 -10 356 192 0 0 chr1 6727487 6727560 -275466104 - L1ME3A LINE L1 -8 6162 6090 336 287 73 30 chr1 6727681 6727845 -275465819 - MIR SINE MIR -2 260 90 * 454 312 99 14 chr1 6727833 6728054 -275465610 - MIR SINE MIR -11 251 12 1451 204 15 4 chr1 6728398 6728668 -275464996 - AluJb SINE Alu -39 273 1 180 0 0 0 chr1 6729130 6729150 -275464514 + (T)n Simple_repeat Simple_repeat 1 20 0 917 121 27 0 chr1 6730959 6731108 -275462556 + L1MB4 LINE L1 6022 6174 -6 25 0 0 0 chr1 6731108 6731133 -275462531 + AT_rich Low_complexity Low_complexity 1 25 0 1822 174 14 0 chr1 6732365 6732641 -275461023 + AluJo SINE Alu 1 280 -32 248 281 23 86 chr1 6733070 6733198 -275460466 + MIR3 SINE MIR 50 169 -39 244 340 21 7 chr1 6733524 6733658 -275460006 + MIR SINE MIR 20 156 -64 1918 149 3 17 chr1 6733719 6734021 -275459643 + AluJo SINE Alu 3 300 -12 2186 89 62 7 chr1 6734130 6734422 -275459242 - AluSp SINE Alu -5 308 1 1816 158 0 17 chr1 6734624 6734916 -275458748 - AluJo SINE Alu -25 287 1 476 230 197 0 chr1 6734926 6735113 -275458551 + Charlie8 DNA MER1_type 40 286 -2131 1764 176 10 26 chr1 6735591 6735904 -275457760 + AluJb SINE Alu 1 308 -4 1106 156 6 0 chr1 6736574 6736734 -275456930 - AluJ SINE Alu -18 294 134 2375 103 3 0 chr1 6736734 6737035 -275456629 - AluSx SINE Alu -10 302 1 1411 200 27 21 chr1 6737482 6737812 -275455852 + L1MD3 LINE L1 7658 7989 -6 328 306 56 9 chr1 6737813 6737921 -275455743 - MIR3 SINE MIR -20 188 76 379 106 0 26 chr1 6738011 6738088 -275455576 - FLAM SINE Alu -3 130 68 1927 117 7 4 chr1 6738088 6738361 -275455303 - AluSq SINE Alu 0 313 40 2217 144 0 0 chr1 6739179 6739491 -275454173 + AluSx SINE Alu 1 312 0 2136 96 43 3 chr1 6739495 6739777 -275453887 + AluY SINE Alu 2 294 -17 2375 73 21 0 chr1 6739778 6740064 -275453600 + AluY SINE Alu 1 292 -19 204 40 0 0 chr1 6740095 6740120 -275453544 + (CAAAT)n Simple_repeat Simple_repeat 2 26 0 1935 76 0 20 chr1 6741106 6741357 -275452307 + AluY SINE Alu 51 296 -15 2303 81 0 11 chr1 6741736 6742086 -275451578 - AluSq SINE Alu 0 347 1 2338 122 0 0 chr1 6742098 6742409 -275451255 - AluSx SINE Alu -1 311 1 754 191 0 0 chr1 6742582 6742713 -275450951 + FLAM_C SINE Alu 3 133 0 2315 85 7 10 chr1 6742876 6743181 -275450483 + AluY SINE Alu 1 304 -7 2281 92 0 46 chr1 6744612 6744937 -275448727 + AluSx SINE Alu 1 310 -2 1821 178 3 3 chr1 6745949 6746241 -275447423 + AluJo SINE Alu 5 296 -16 2610 66 3 0 chr1 6746776 6747081 -275446583 + AluY SINE Alu 1 306 -5 245 277 54 31 chr1 6747323 6747453 -275446211 + MIR SINE MIR 16 148 -60 611 143 41 0 chr1 6748290 6748388 -275445276 - LTR12 LTR ERV1 0 714 613 342 212 35 0 chr1 6748388 6748473 -275445191 - LTR30 LTR ERV1 -79 643 556 1325 82 11 149 chr1 6748474 6748742 -275444922 - LTR12 LTR ERV1 -429 285 55 273 146 0 21 chr1 6748742 6748790 -275444874 - LTR12 LTR ERV1 -596 118 72 248 250 0 0 chr1 6748798 6748850 -275444814 - LTR30 LTR ERV1 -670 52 1 2149 102 0 0 chr1 6748850 6749124 -275444540 + AluSq SINE Alu 31 304 -9 1145 114 0 148 chr1 6749133 6749369 -275444295 + AluJb SINE Alu 87 287 -25 403 271 37 0 chr1 6750181 6750288 -275443376 + L1MA9 LINE L1 6180 6290 -22 191 345 244 16 chr1 6750343 6750589 -275443075 + L3 LINE CR1 520 821 -756 928 270 47 58 chr1 6750685 6750858 -275442806 - L2 LINE L2 -1 3312 3139 2289 105 3 0 chr1 6750858 6751152 -275442512 + AluSx SINE Alu 1 295 -17 928 270 47 58 chr1 6751152 6751224 -275442440 - L2 LINE L2 -174 3139 3068 2567 54 3 13 chr1 6751224 6751538 -275442126 - AluY SINE Alu 0 311 1 2075 127 3 7 chr1 6751544 6751836 -275441828 - AluSq SINE Alu -22 291 1 928 270 47 58 chr1 6751836 6752067 -275441597 - L2 LINE L2 -250 3063 2833 280 301 10 10 chr1 6752099 6752202 -275441462 + L3 LINE CR1 1273 1375 -202 492 258 31 25 chr1 6752664 6752823 -275440841 - HAL1 LINE L1 -2 2505 2346 598 293 55 21 chr1 6752865 6753155 -275440509 - HAL1 LINE L1 -328 2179 1880 851 153 82 0 chr1 6753162 6753332 -275440332 + Tigger1 DNA MER2_type 1744 1927 -491 2467 56 0 3 chr1 6753369 6753656 -275440008 + AluY SINE Alu 1 286 -25 444 239 96 117 chr1 6753725 6754286 -275439378 - MLT1H1 LTR MaLR -1 548 1 1536 171 0 113 chr1 6754389 6754717 -275438947 - AluJb SINE Alu -21 291 1 1029 239 97 15 chr1 6754717 6755191 -275438473 + MER114 LTR ERV 2 578 -70 2430 96 0 0 chr1 6755191 6755492 -275438172 - AluSg SINE Alu -9 301 1 1849 136 54 4 chr1 6755494 6755773 -275437891 - AluSx SINE Alu -19 293 1 2433 63 0 78 chr1 6756217 6756550 -275437114 + AluSc SINE Alu 1 307 -2 1518 112 0 40 chr1 6758660 6758883 -275434781 + AluSq SINE Alu 87 300 -13 2271 110 3 7 chr1 6760413 6760722 -275432942 - AluSx SINE Alu -4 308 1 1668 210 0 0 chr1 6760724 6761019 -275432645 - AluJo SINE Alu -6 306 12 1587 152 86 4 chr1 6761041 6761310 -275432354 - AluJb SINE Alu -19 293 3 1641 113 18 0 chr1 6761379 6761601 -275432063 + AluSg/x SINE Alu 72 297 -15 2371 60 35 0 chr1 6761845 6762128 -275431536 + AluY SINE Alu 1 293 -18 707 209 0 0 chr1 6762167 6762296 -275431368 + AluSg/x SINE Alu 147 275 -37 2102 145 3 0 chr1 6762558 6762854 -275430810 + AluJb SINE Alu 1 297 -15 2454 84 0 3 chr1 6762858 6763157 -275430507 + AluSx SINE Alu 1 298 -14 232 247 39 26 chr1 6763173 6763250 -275430414 + MER5A DNA MER1_type 111 188 -1 2414 92 10 0 chr1 6763472 6763776 -275429888 - AluSc SINE Alu -2 307 1 340 191 16 0 chr1 6763861 6763924 -275429740 - Tigger5 DNA MER2_type 0 2323 2260 2251 96 23 13 chr1 6763931 6764233 -275429431 + AluSq SINE Alu 1 305 -8 993 181 54 15 chr1 6764233 6764437 -275429227 - AluJb SINE Alu -97 215 4 318 231 87 19 chr1 6764726 6764817 -275428847 - MER5B DNA MER1_type -21 157 60 234 252 192 20 chr1 6764817 6764968 -275428696 + MER5B DNA MER1_type 2 178 0 520 310 7 0 chr1 6765890 6766032 -275427632 - Charlie8 DNA MER1_type -2197 220 78 2252 102 10 20 chr1 6766880 6767185 -275426479 + AluSx SINE Alu 1 302 -10 1962 76 0 0 chr1 6767199 6767435 -275426229 + AluY SINE Alu 56 291 -20 1063 266 151 75 chr1 6767712 6767739 -275425925 + L2 LINE L2 1774 1798 -1515 2550 57 3 0 chr1 6767739 6768036 -275425628 + AluY SINE Alu 1 298 -13 1063 266 151 75 chr1 6768036 6768623 -275425041 + L2 LINE L2 1798 2339 -974 793 173 0 0 chr1 6768623 6768756 -275424908 - FLAM_C SINE Alu 0 133 1 1063 266 151 75 chr1 6768756 6769348 -275424316 + L2 LINE L2 2339 3085 -228 658 157 50 25 chr1 6769655 6769776 -275423888 + FRAM SINE Alu 38 161 -15 377 270 80 58 chr1 6769776 6769876 -275423788 - L1ME LINE L1 -3775 2869 2773 246 32 0 0 chr1 6769876 6769907 -275423757 + (TG)n Simple_repeat Simple_repeat 2 32 0 377 270 80 58 chr1 6769907 6769922 -275423742 - L1ME LINE L1 -3871 2773 2760 2237 97 35 0 chr1 6769922 6770210 -275423454 - AluSq SINE Alu -15 298 1 377 270 80 58 chr1 6770210 6770230 -275423434 - L1ME LINE L1 -3884 2760 2730 226 293 61 0 chr1 6770327 6770426 -275423238 - L1ME LINE L1 -4832 1710 1606 1762 112 73 15 chr1 6770505 6770764 -275422900 - AluSq SINE Alu -39 274 1 249 187 227 53 chr1 6770767 6770842 -275422822 - L1ME LINE L1 -5977 657 570 506 317 43 0 chr1 6771428 6771589 -275422075 + MIR SINE MIR 92 259 -3 2341 102 0 7 chr1 6771682 6771985 -275421679 + AluSx SINE Alu 1 301 -11 738 128 0 38 chr1 6772502 6772635 -275421029 + FLAM_C SINE Alu 16 143 0 354 246 154 51 chr1 6773322 6773497 -275420167 - Charlie8 DNA MER1_type -2137 280 88 2053 154 0 3 chr1 6774164 6774463 -275419201 + AluJb SINE Alu 1 298 -14 217 208 21 0 chr1 6774613 6774661 -275419003 - L2 LINE L2 -1 3271 3223 24 0 0 0 chr1 6775729 6775753 -275417911 + AT_rich Low_complexity Low_complexity 1 24 0 2107 113 0 27 chr1 6777387 6777687 -275415977 - AluSx SINE Alu -20 292 1 1329 175 15 105 chr1 6779086 6779411 -275414253 - AluJb SINE Alu -16 296 1 1967 108 72 4 chr1 6779413 6779691 -275413973 - AluSq SINE Alu -16 297 1 1316 157 120 25 chr1 6779694 6779968 -275413696 - AluSq SINE Alu -13 300 1 1614 185 3 39 chr1 6779997 6780305 -275413359 + AluJo SINE Alu 1 297 -15 768 191 0 0 chr1 6780305 6780436 -275413228 + FLAM_C SINE Alu 1 131 -2 2271 95 14 3 chr1 6780444 6780740 -275412924 + AluSx SINE Alu 3 301 -11 1827 109 4 0 chr1 6782156 6782394 -275411270 - AluSq SINE Alu -74 239 1 247 360 198 7 chr1 6783056 6783334 -275410330 - L2 LINE L2 -17 3296 2966 445 290 172 56 chr1 6783475 6783649 -275410015 - L2 LINE L2 -728 2586 2434 1987 134 3 0 chr1 6783649 6783941 -275409723 + AluSx SINE Alu 1 293 -19 445 290 172 56 chr1 6783941 6784284 -275409380 - L2 LINE L2 -880 2434 1952 363 230 32 97 chr1 6784357 6784448 -275409216 + L1ME3A LINE L1 5624 5719 -459 2204 90 0 26 chr1 6784448 6784758 -275408906 - AluSx SINE Alu -10 302 1 363 230 32 97 chr1 6784758 6784883 -275408781 + L1ME3A LINE L1 5719 5826 -352 362 239 91 77 chr1 6784887 6784990 -275408674 + L1ME3A LINE L1 5950 6050 -120 1968 124 7 7 chr1 6784990 6785288 -275408376 - AluJo SINE Alu -14 298 1 362 239 91 77 chr1 6785288 6785393 -275408271 + L1ME3A LINE L1 6050 6161 -9 212 306 45 45 chr1 6785406 6785517 -275408147 - L2 LINE L2 -1480 1834 1724 216 0 0 0 chr1 6785544 6785568 -275408096 + (CCGGG)n Simple_repeat Simple_repeat 3 26 0 24 0 0 0 chr1 6785851 6785875 -275407789 + GC_rich Low_complexity Low_complexity 1 24 0 2116 117 0 10 chr1 6786741 6787049 -275406615 + AluSq SINE Alu 1 305 -8 1868 147 7 7 chr1 6790098 6790264 -275403400 - AluJo SINE Alu -12 300 132 2220 80 6 45 chr1 6790264 6790576 -275403088 - AluSg SINE Alu -10 300 1 1868 147 7 7 chr1 6790576 6790709 -275402955 - AluJo SINE Alu -179 133 1 205 179 0 0 chr1 6791283 6791322 -275402342 + CT-rich Low_complexity Low_complexity 2 40 0 2022 98 42 7 chr1 6791675 6791961 -275401703 + AluSq SINE Alu 1 296 -17 2163 115 0 10 chr1 6792367 6792680 -275400984 + AluSx SINE Alu 1 310 -2 694 163 106 0 chr1 6792757 6792880 -275400784 + AluJo SINE Alu 1 136 -176 1838 148 10 0 chr1 6792881 6793172 -275400492 + AluJb SINE Alu 1 294 -18 490 254 40 20 chr1 6793350 6793512 -275400152 + MIR SINE MIR 12 173 -62 1913 116 33 10 chr1 6793585 6793886 -275399778 + AluSg SINE Alu 1 308 -2 1719 130 69 0 chr1 6793930 6794206 -275399458 + AluSx SINE Alu 1 295 -17 2362 60 3 3 chr1 6794988 6795288 -275398376 + AluSg SINE Alu 2 301 -9 22 80 0 0 chr1 6796084 6796134 -275397530 + GC_rich Low_complexity Low_complexity 1 50 0 23 0 0 0 chr1 6796167 6796190 -275397474 + GC_rich Low_complexity Low_complexity 1 23 0 26 0 0 0 chr1 6796547 6796573 -275397091 + GC_rich Low_complexity Low_complexity 1 26 0 25 31 0 0 chr1 6796707 6796739 -275396925 + GC_rich Low_complexity Low_complexity 1 32 0 217 196 0 89 chr1 6797252 6797364 -275396300 + G-rich Low_complexity Low_complexity 4 105 0 246 210 8 89 chr1 6797803 6797960 -275395704 + G-rich Low_complexity Low_complexity 1 144 0 2471 54 0 0 chr1 6798863 6799160 -275394504 + AluSg SINE Alu 1 297 -13 201 143 0 0 chr1 6799161 6799196 -275394468 + MIR SINE MIR 108 142 -66 198 0 0 0 chr1 6799233 6799255 -275394409 + (TTG)n Simple_repeat Simple_repeat 2 23 0 2187 89 3 0 chr1 6799590 6799883 -275393781 - AluSc SINE Alu -15 294 1 816 78 0 0 chr1 6800024 6800126 -275393538 + AluS SINE Alu 1 102 -210 728 67 0 0 chr1 6800130 6800220 -275393444 + AluSp/q SINE Alu 208 297 -16 844 162 26 26 chr1 6800223 6800414 -275393250 - AluJo SINE Alu -118 194 4 2031 124 10 3 chr1 6800605 6800904 -275392760 - AluSq SINE Alu -10 303 3 2078 85 0 0 chr1 6801170 6801440 -275392224 + AluSc SINE Alu 16 285 -24 2205 91 0 26 chr1 6801960 6802130 -275391534 - AluSx SINE Alu -11 301 128 317 86 17 0 chr1 6802130 6802188 -275391476 + (TTTA)n Simple_repeat Simple_repeat 2 60 0 1965 114 4 4 chr1 6802188 6802468 -275391196 - AluSc SINE Alu -29 280 1 2205 91 0 26 chr1 6802468 6802605 -275391059 - AluSx SINE Alu -182 130 1 1519 143 85 51 chr1 6802605 6802761 -275390903 - AluJb SINE Alu -9 303 154 2080 82 4 0 chr1 6802761 6803041 -275390623 - AluY SINE Alu 0 311 31 1519 143 85 51 chr1 6803041 6803177 -275390487 - AluJb SINE Alu -158 154 1 2091 128 7 0 chr1 6803450 6803746 -275389918 + AluSg SINE Alu 1 298 -12 1743 157 14 7 chr1 6803764 6804058 -275389606 + AluSx SINE Alu 5 300 -12 1989 128 21 0 chr1 6804179 6804467 -275389197 + AluSx SINE Alu 5 298 -14 1373 133 24 0 chr1 6804630 6804840 -275388824 - AluSg/x SINE Alu -12 300 86 1744 163 0 14 chr1 6804868 6805163 -275388501 + AluJb SINE Alu 1 291 -21 2141 99 3 3 chr1 6805171 6805464 -275388200 + AluSx SINE Alu 1 293 -19 769 124 0 0 chr1 6805650 6805763 -275387901 - AluSg/x SINE Alu -2 310 198 515 133 133 0 chr1 6805765 6805855 -275387809 + AluSc SINE Alu 191 292 -17 548 214 179 29 chr1 6806147 6806287 -275387377 - FRAM SINE Alu -5 161 1 1396 117 120 62 chr1 6806299 6806573 -275387091 - AluSx SINE Alu -12 290 1 30 77 0 0 chr1 6808276 6808341 -275385323 + GC_rich Low_complexity Low_complexity 1 65 0 260 277 0 85 chr1 6810940 6810971 -275382693 - L1ME3A LINE L1 0 6170 6138 1943 149 10 0 chr1 6810971 6811267 -275382397 + AluJb SINE Alu 1 299 -13 260 277 0 85 chr1 6811267 6811365 -275382299 - L1ME3A LINE L1 -32 6138 6052 181 217 22 22 chr1 6812342 6812388 -275381276 - MIR SINE MIR -111 151 106 2361 80 0 3 chr1 6812402 6812713 -275380951 - AluY SINE Alu -1 310 1 201 39 0 0 chr1 6812713 6812739 -275380925 + (TTTTG)n Simple_repeat Simple_repeat 2 27 0 2026 123 0 0 chr1 6812749 6813026 -275380638 - AluSp SINE Alu -36 277 1 745 197 0 22 chr1 6813027 6813164 -275380500 - AluJo SINE Alu -178 134 1 531 224 133 12 chr1 6814651 6814816 -275378848 + MER58 DNA MER1_type 59 243 -2177 759 130 0 32 chr1 6814855 6814978 -275378686 - AluSg/x SINE Alu -6 306 188 1509 119 5 0 chr1 6814978 6815196 -275378468 - AluSx SINE Alu -93 219 1 229 250 38 25 chr1 6815956 6816036 -275377628 - MIR SINE MIR -107 155 75 488 241 49 12 chr1 6816069 6816231 -275377433 - L2 LINE L2 -290 3023 2856 1639 136 9 99 chr1 6816244 6816567 -275377097 - AluJo SINE Alu -18 294 1 2241 88 0 14 chr1 6816596 6816893 -275376771 - AluY SINE Alu -18 293 1 313 308 14 7 chr1 6817279 6817391 -275376273 + MIR SINE MIR 100 211 -51 749 186 0 0 chr1 6820774 6820892 -275372772 + AluJb SINE Alu 1 118 -194 780 188 0 0 chr1 6821240 6821373 -275372291 - AluSg/x SINE Alu -6 306 174 541 286 129 40 chr1 6825746 6826424 -275367240 + L2 LINE L2 2554 3294 -19 584 251 61 0 chr1 6826931 6827094 -275366570 + MER3 DNA MER1_type 1 126 -83 2020 117 10 10 chr1 6827100 6827232 -275366432 + AluSg SINE Alu 1 132 -178 2221 99 0 16 chr1 6827232 6827546 -275366118 + AluSg SINE Alu 1 309 -1 2020 117 10 10 chr1 6827546 6827713 -275365951 + AluSg SINE Alu 131 300 -10 2265 98 3 0 chr1 6827715 6828021 -275365643 + AluSg SINE Alu 1 307 -3 2113 127 3 3 chr1 6828025 6828333 -275365331 + AluSc SINE Alu 1 308 -1 850 131 0 44 chr1 6828344 6828481 -275365183 + FLAM_C SINE Alu 1 131 -2 1935 141 0 20 chr1 6829634 6829938 -275363726 - AluJb SINE Alu -14 298 1 189 0 0 0 chr1 6832510 6832531 -275361133 + (CAG)n Simple_repeat Simple_repeat 2 22 0 2418 71 0 10 chr1 6833461 6833771 -275359893 - AluSq SINE Alu -6 307 1 2066 84 31 14 chr1 6833774 6834060 -275359604 - AluSx SINE Alu -19 293 3 1865 107 7 15 chr1 6835198 6835320 -275358344 + AluSx SINE Alu 15 136 -172 2325 81 0 7 chr1 6835320 6835628 -275358036 + AluY SINE Alu 1 306 -5 1865 107 7 15 chr1 6835628 6835801 -275357863 + AluSx SINE Alu 136 308 0 272 344 101 12 chr1 6836767 6837014 -275356650 - L2 LINE L2 -174 3098 2830 2924 89 105 7 chr1 6837023 6837351 -275356313 + MER1A DNA MER1_type 37 422 -2280 2396 65 0 3 chr1 6837351 6837661 -275356003 + AluY SINE Alu 1 309 -2 2924 89 105 7 chr1 6837661 6837781 -275355883 + MER1A DNA MER1_type 422 529 0 2090 109 0 3 chr1 6837841 6838134 -275355530 - AluSg SINE Alu -13 297 6 233 413 18 6 chr1 6838147 6838314 -275355350 - L2 LINE L2 -601 2713 2545 1759 155 31 3 chr1 6838758 6839049 -275354615 + AluJo SINE Alu 5 303 -9 1738 137 37 0 chr1 6839497 6839767 -275353897 - AluSx SINE Alu -32 280 1 863 182 77 59 chr1 6840643 6840863 -275352801 - MLT2D LTR ERVL -3 411 188 619 143 33 44 chr1 6841031 6841209 -275352455 + LTR21B LTR ERV1 310 438 0 12744 196 22 39 chr1 6841209 6842831 -275350833 + HERVFH21 LTR ERV1 5 1652 -4877 2319 73 0 19 chr1 6842831 6843146 -275350518 - AluY SINE Alu -2 309 1 12744 196 22 39 chr1 6843146 6843734 -275349930 + HERVFH21 LTR ERV1 1652 2248 -4281 2503 47 3 0 chr1 6843734 6844034 -275349630 - AluY SINE Alu -10 301 1 12744 196 22 39 chr1 6844034 6844420 -275349244 + HERVFH21 LTR ERV1 2248 2639 -3890 2208 74 3 0 chr1 6844420 6844704 -275348960 + AluY SINE Alu 1 285 -26 12744 196 22 39 chr1 6844704 6845593 -275348071 + HERVFH21 LTR ERV1 2639 3357 -3172 805 112 0 0 chr1 6845593 6845709 -275347955 + AluSg/x SINE Alu 193 308 -4 2297 251 17 0 chr1 6845709 6846232 -275347432 + HERVFH21 LTR ERV1 3349 3880 -2649 * 5402 139 13 4 chr1 6846226 6847184 -275346480 + HERVFH21 LTR ERV1 4540 5404 -1196 5045 253 7 16 chr1 6847519 6848730 -275344934 + HERVFH21 LTR ERV1 6553 7751 -648 1828 115 146 6 chr1 6848732 6848846 -275344818 + LTR14B LTR ERVK 1 98 -510 2255 94 0 0 chr1 6848846 6849144 -275344520 + AluY SINE Alu 1 298 -13 1828 115 146 6 chr1 6849144 6849482 -275344182 + LTR14B LTR ERVK 98 607 -1 1756 264 50 23 chr1 6849488 6849584 -275344080 + HERVFH21 LTR ERV1 5932 6024 -505 2076 107 0 13 chr1 6849584 6849884 -275343780 - AluY SINE Alu -15 296 1 1756 264 50 23 chr1 6849884 6850307 -275343357 + HERVFH21 LTR ERV1 6024 6465 -64 4805 144 14 4 chr1 6850344 6851219 -275342445 + HERVFH21 LTR ERV1 4572 5404 -1196 795 260 0 9 chr1 6851554 6851785 -275341879 + HERVFH21 LTR ERV1 6553 6781 -1618 377 128 13 34 chr1 6851886 6851964 -275341700 - Alu SINE Alu -248 52 1 235 178 0 0 chr1 6851938 6851983 -275341681 + MLT2D LTR ERVL 82 126 -288 * 2014 128 0 3 chr1 6851984 6852282 -275341382 + AluSx SINE Alu 1 297 -15 1856 108 3 93 chr1 6852294 6852626 -275341038 + AluSq SINE Alu 1 302 -11 1981 96 14 7 chr1 6852626 6852905 -275340759 + AluSp SINE Alu 1 282 -31 538 175 65 29 chr1 6852905 6853078 -275340586 - LTR21B LTR ERV1 0 438 293 1998 269 25 20 chr1 6853234 6853309 -275340355 - HERVFH21 LTR ERV1 0 6529 6456 2423 49 0 16 chr1 6853309 6853616 -275340048 + AluY SINE Alu 1 302 -9 1998 269 25 20 chr1 6853616 6854038 -275339626 - HERVFH21 LTR ERV1 -73 6456 6026 2076 107 0 13 chr1 6854038 6854338 -275339326 + AluY SINE Alu 1 296 -15 1998 269 25 20 chr1 6854338 6854434 -275339230 - HERVFH21 LTR ERV1 -503 6026 5932 1722 84 18 92 chr1 6854440 6854776 -275338888 - LTR14A LTR ERVK -1 343 54 2223 97 0 0 chr1 6854778 6855076 -275338588 - AluY SINE Alu -13 298 1 2349 52 3 0 chr1 6855123 6855410 -275338254 + AluY SINE Alu 1 288 -23 1565 89 0 0 chr1 6856026 6856228 -275337436 - AluY SINE Alu -9 302 101 1025 138 0 12 chr1 6856228 6856388 -275337276 - AluSx SINE Alu -154 158 1 362 300 10 0 chr1 6856405 6856567 -275337097 + L1MC4 LINE L1 1980 6926 -1139 324 254 20 0 chr1 6856535 6856635 -275337029 - L1MCa LINE L1 -1333 6989 1996 * 2196 103 3 0 chr1 6856676 6856978 -275336686 - AluSx SINE Alu -9 303 1 319 307 42 85 chr1 6856978 6857081 -275336583 - L1MC4 LINE L1 -1982 5826 5733 661 186 65 16 chr1 6857081 6857205 -275336459 - FLAM_A SINE Alu -3 130 1 319 307 42 85 chr1 6857205 6857290 -275336374 - L1MC4 LINE L1 -2075 5733 5646 1449 130 43 94 chr1 6857398 6857727 -275335937 - AluSx SINE Alu 0 314 1 1382 210 4 0 chr1 6857743 6857995 -275335669 - AluJb SINE Alu -59 253 1 2222 92 3 0 chr1 6858042 6858334 -275335330 + AluSp SINE Alu 1 293 -20 3136 163 52 69 chr1 6858357 6858543 -275335121 - L1MB4 LINE L1 -173 6007 5819 1632 178 13 16 chr1 6858543 6858847 -275334817 + AluJb SINE Alu 1 303 -9 3136 163 52 69 chr1 6858847 6859333 -275334331 - L1MB4 LINE L1 -361 5819 5326 2015 123 38 0 chr1 6859333 6859626 -275334038 - AluSx SINE Alu -8 304 1 2054 99 43 16 chr1 6859632 6859936 -275333728 - AluSq SINE Alu -1 312 1 3136 163 52 69 chr1 6859936 6860262 -275333402 - L1MB4 LINE L1 -859 5321 5010 323 58 0 0 chr1 6860315 6860367 -275333297 - Alu SINE Alu 0 300 249 910 67 0 8 chr1 6860367 6860486 -275333178 - AluYb8 SINE Alu -200 118 1 898 230 118 0 chr1 6860487 6860757 -275332907 - L1MB4 LINE L1 -1118 5028 4727 * 2378 190 61 7 chr1 6860745 6861304 -275332360 - L1 LINE L1 -791 5355 4767 636 203 61 54 chr1 6861307 6861455 -275332209 - FRAM SINE Alu -25 151 3 21 0 0 0 chr1 6861475 6861496 -275332168 + AT_rich Low_complexity Low_complexity 1 21 0 1387 200 46 7 chr1 6861496 6861781 -275331883 - AluJo SINE Alu -16 296 1 816 173 26 108 chr1 6861781 6861945 -275331719 - AluJo SINE Alu -16 296 120 269 0 56 0 chr1 6861945 6861981 -275331683 + (TTTTA)n Simple_repeat Simple_repeat 3 40 0 2239 71 0 0 chr1 6861981 6862262 -275331402 - AluY SINE Alu -30 281 1 816 173 26 108 chr1 6862262 6862327 -275331337 - AluJo SINE Alu -190 122 85 2276 94 0 3 chr1 6862383 6862682 -275330982 - AluSq SINE Alu -15 298 1 1362 263 29 61 chr1 6862895 6863219 -275330445 - L1MC4 LINE L1 -1110 6932 6628 2079 130 0 19 chr1 6863219 6863535 -275330129 + AluSx SINE Alu 3 312 0 1362 263 29 61 chr1 6863535 6863701 -275329963 - L1MC4 LINE L1 -1414 6628 6458 516 238 94 59 chr1 6863977 6864140 -275329524 + MIR SINE MIR 15 188 -74 2337 85 3 0 chr1 6864140 6864445 -275329219 + AluSp SINE Alu 1 306 -7 516 238 94 59 chr1 6864445 6864483 -275329181 + MIR SINE MIR 188 223 -39 364 331 52 7 chr1 6864509 6864645 -275329019 + L2 LINE L2 3169 3310 -3 1860 167 0 7 chr1 6865131 6865436 -275328228 - AluSx SINE Alu -9 303 1 682 292 82 0 chr1 6866411 6866630 -275327034 - MIR SINE MIR -24 238 2 2196 100 0 0 chr1 6866814 6867113 -275326551 + AluY SINE Alu 1 299 -12 366 263 153 43 chr1 6867257 6867466 -275326198 - MIR SINE MIR -10 252 21 351 324 75 6 chr1 6867486 6867659 -275326005 - MIR SINE MIR -18 244 60 2150 101 3 3 chr1 6867849 6868155 -275325509 - AluSq SINE Alu -7 306 1 954 179 0 42 chr1 6868180 6868370 -275325294 - AluSg/x SINE Alu -9 301 120 2103 138 0 0 chr1 6868371 6868683 -275324981 - AluSx SINE Alu 0 312 1 21 0 0 0 chr1 6868688 6868709 -275324955 + AT_rich Low_complexity Low_complexity 1 21 0 2162 107 3 0 chr1 6868709 6869018 -275324646 - AluSg SINE Alu 0 310 1 381 313 143 27 chr1 6869507 6870025 -275323639 + L2 LINE L2 2091 2668 -646 2132 117 3 0 chr1 6870373 6870673 -275322991 - AluSg SINE Alu -7 303 3 228 35 0 0 chr1 6870678 6870707 -275322957 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 1534 128 8 0 chr1 6870726 6870960 -275322704 - AluSx SINE Alu -76 236 1 2173 98 7 3 chr1 6871058 6871363 -275322301 - AluSx SINE Alu -6 306 1 772 191 76 25 chr1 6873025 6873182 -275320482 + FRAM SINE Alu 1 165 -11 2334 77 0 3 chr1 6873288 6873588 -275320076 + AluY SINE Alu 1 299 -12 2349 78 3 0 chr1 6874723 6875029 -275318635 - AluSq SINE Alu -6 307 1 1983 106 0 4 chr1 6875140 6875415 -275318249 - AluSg SINE Alu -5 305 32 2448 66 0 0 chr1 6875421 6875723 -275317941 - AluSg SINE Alu -8 302 1 2011 131 13 0 chr1 6875751 6876057 -275317607 - AluSx SINE Alu 0 312 3 1254 86 6 17 chr1 6876089 6876263 -275317401 - AluSg SINE Alu -138 172 1 302 305 76 8 chr1 6876295 6876426 -275317238 + MIR SINE MIR 11 150 -112 319 263 202 0 chr1 6876904 6877018 -275316646 - L1ME4a LINE L1 -215 5906 5770 1944 126 23 19 chr1 6877137 6877447 -275316217 - AluSx SINE Alu -1 311 1 835 141 0 8 chr1 6877687 6877815 -275315849 + FLAM_C SINE Alu 13 139 -4 2320 68 3 0 chr1 6879186 6879480 -275314184 + AluY SINE Alu 2 296 -15 182 274 27 27 chr1 6879553 6879626 -275314038 + MIR3 SINE MIR 124 196 -12 2310 84 7 0 chr1 6879738 6880048 -275313616 - AluSp SINE Alu -1 312 1 455 172 0 0 chr1 6880118 6880182 -275313482 + T-rich Low_complexity Low_complexity 1 64 0 25 0 0 0 chr1 6880639 6880664 -275313000 + GC_rich Low_complexity Low_complexity 1 25 0 26 50 0 0 chr1 6881656 6881696 -275311968 + GC_rich Low_complexity Low_complexity 1 40 0 189 246 0 0 chr1 6881726 6881791 -275311873 + C-rich Low_complexity Low_complexity 1 65 0 624 190 114 16 chr1 7081988 7082172 -275111492 - HAL1 LINE L1 -651 1856 1655 647 293 111 91 chr1 7082196 7082582 -275111082 + HAL1 LINE L1 142 535 -1972 232 253 41 75 chr1 7082586 7082732 -275110932 - HAL1 LINE L1 -379 2128 1988 253 253 23 11 chr1 7082766 7082853 -275110811 - MIR SINE MIR -2 260 173 198 0 0 0 chr1 7083094 7083116 -275110548 + (TTTTG)n Simple_repeat Simple_repeat 3 24 0 888 117 0 0 chr1 7083117 7083237 -275110427 - AluSq/x SINE Alu -192 120 1 2238 124 0 0 chr1 7083628 7083935 -275109729 + AluSx SINE Alu 1 307 -5 197 281 18 0 chr1 7084076 7084133 -275109531 + L2 LINE L2 3254 3311 -2 2041 140 27 0 chr1 7084279 7084572 -275109092 + AluSx SINE Alu 1 301 -11 385 242 73 16 chr1 7084822 7084946 -275108718 + L2 LINE L2 3182 3312 -1 222 188 0 42 chr1 7085062 7085110 -275108554 - L2 LINE L2 -93 3220 3175 1389 106 0 0 chr1 7085121 7085300 -275108364 + AluSx SINE Alu 1 179 -133 362 289 15 55 chr1 7085329 7085530 -275108134 - MIR SINE MIR -50 212 20 1986 116 0 58 chr1 7085814 7086124 -275107540 + AluSx SINE Alu 1 292 -20 762 100 0 0 chr1 7087125 7087225 -275106439 + FRAM SINE Alu 59 158 -18 4719 114 4 4 chr1 7087225 7087934 -275105730 + L1PA16 LINE L1 5470 6178 0 2438 99 3 0 chr1 7088046 7088358 -275105306 + AluSq SINE Alu 1 313 0 623 306 45 27 chr1 7088417 7088753 -275104911 + L1ME LINE L1 5400 5741 -380 489 17 0 0 chr1 7088825 7088883 -275104781 + (TG)n Simple_repeat Simple_repeat 1 58 0 2114 83 7 4 chr1 7088883 7089161 -275104503 - AluSx SINE Alu -33 279 1 2185 111 0 7 chr1 7089357 7089663 -275104001 + AluSx SINE Alu 1 304 -8 691 265 34 0 chr1 7089890 7090094 -275103570 - MIR SINE MIR -51 211 1 2237 124 0 0 chr1 7090199 7090505 -275103159 + AluSx SINE Alu 1 306 -6 1298 129 0 0 chr1 7090505 7090683 -275102981 + AluSg/x SINE Alu 134 311 -1 273 119 0 0 chr1 7090683 7090725 -275102939 + (GGA)n Simple_repeat Simple_repeat 1 42 0 339 259 44 38 chr1 7090975 7091133 -275102531 - L2 LINE L2 -533 2781 2623 2378 86 3 22 chr1 7091255 7091568 -275102096 + AluSp SINE Alu 1 307 -6 2332 101 51 28 chr1 7091653 7092009 -275101655 + THE1B LTR MaLR 1 364 0 2121 136 0 3 chr1 7092273 7092583 -275101081 - AluSx SINE Alu -3 309 1 2132 116 3 0 chr1 7092991 7093284 -275100380 + AluSx SINE Alu 1 294 -18 723 176 57 23 chr1 7093863 7094039 -275099625 + MIR SINE MIR 67 248 -14 1026 128 116 6 chr1 7094176 7094348 -275099316 - AluJb SINE Alu -9 303 113 1127 167 112 73 chr1 7094506 7094793 -275098871 + AluJo SINE Alu 2 299 -3 2018 103 26 36 chr1 7094822 7095124 -275098540 + AluSx SINE Alu 1 299 -13 185 255 0 0 chr1 7095209 7095256 -275098408 - MER5C DNA MER1_type 0 324 278 210 91 0 0 chr1 7095258 7095291 -275098373 + (TTTTG)n Simple_repeat Simple_repeat 2 34 0 257 264 16 91 chr1 7095455 7095576 -275098088 - MER5C DNA MER1_type -205 119 8 756 263 43 0 chr1 7096037 7096246 -275097418 + MIR SINE MIR 22 239 -23 2148 110 0 0 chr1 7096246 7096566 -275097098 - AluSx SINE Alu 0 320 1 1827 150 0 41 chr1 7096583 7096783 -275096881 - AluJb SINE Alu -30 282 96 2321 105 0 16 chr1 7096783 7097097 -275096567 - AluSq SINE Alu -4 309 1 1827 150 0 41 chr1 7097097 7097190 -275096474 - AluJb SINE Alu -216 96 1 207 139 0 0 chr1 7097192 7097228 -275096436 + (CTA)n Simple_repeat Simple_repeat 1 36 0 669 200 23 8 chr1 7097511 7097641 -275096023 + AluJo SINE Alu 3 134 -178 2042 145 16 10 chr1 7097733 7098043 -275095621 + AluJb SINE Alu 1 312 0 2290 102 0 7 chr1 7098427 7098732 -275094932 - AluSq SINE Alu -10 303 1 372 312 24 0 chr1 7098748 7098873 -275094791 - L2 LINE L2 -1 3271 3144 2352 100 3 6 chr1 7099033 7099344 -275094320 + AluSp SINE Alu 1 310 -3 574 103 10 10 chr1 7099345 7099442 -275094222 + (GGAA)n Simple_repeat Simple_repeat 4 100 0 24 0 0 0 chr1 7100174 7100198 -275093466 + AT_rich Low_complexity Low_complexity 1 24 0 566 286 171 26 chr1 7100418 7100623 -275093041 + L2 LINE L2 2826 3000 -313 2149 120 0 7 chr1 7100623 7100924 -275092740 + AluSx SINE Alu 1 299 -13 566 286 171 26 chr1 7100924 7101144 -275092520 + L2 LINE L2 3000 3313 0 1960 125 26 26 chr1 7101322 7101626 -275092038 + AluJb SINE Alu 1 304 -8 2246 108 13 0 chr1 7101645 7101952 -275091712 + AluSx SINE Alu 1 311 -1 1947 127 0 0 chr1 7102212 7102471 -275091193 - AluSq SINE Alu -54 259 1 21 0 0 0 chr1 7102488 7102509 -275091155 + AT_rich Low_complexity Low_complexity 1 21 0 1513 170 69 24 chr1 7102822 7103110 -275090554 + AluJo SINE Alu 1 301 -11 575 234 289 7 chr1 7103621 7103925 -275089739 - L2 LINE L2 -3 3310 2921 2192 96 0 17 chr1 7103931 7104223 -275089441 - AluSq SINE Alu -4 309 23 528 229 33 26 chr1 7104302 7104455 -275089209 + L1MB8 LINE L1 6022 6175 -3 2006 141 0 34 chr1 7104466 7104601 -275089063 + AluJb SINE Alu 1 139 -173 2360 94 0 0 chr1 7104601 7104898 -275088766 + AluSx SINE Alu 1 297 -15 2006 141 0 34 chr1 7104898 7105082 -275088582 + AluJb SINE Alu 139 309 -3 2246 81 3 27 chr1 7105082 7105378 -275088286 + AluSx SINE Alu 1 289 -23 21 0 0 0 chr1 7105379 7105400 -275088264 + AT_rich Low_complexity Low_complexity 1 21 0 1146 259 68 28 chr1 7105444 7105945 -275087719 - L2 LINE L2 -467 2847 2327 952 203 48 84 chr1 7105945 7106324 -275087340 + MLT1B LTR MaLR 1 365 -25 261 0 0 0 chr1 7106330 7106359 -275087305 + (TTTG)n Simple_repeat Simple_repeat 1 29 0 2067 123 4 0 chr1 7106361 7106637 -275087027 - AluSg SINE Alu -33 277 1 2158 129 0 3 chr1 7106687 7106997 -275086667 + AluSx SINE Alu 1 309 -3 6262 40 3 0 chr1 7107526 7108298 -275085366 + L1PA5 LINE L1 5409 6154 0 1311 59 24 0 chr1 7108576 7108746 -275084918 - L1MA3 LINE L1 0 6305 6132 709 93 19 0 chr1 7108807 7108914 -275084750 - L1MA2 LINE L1 -159 6145 6037 2028 116 26 0 chr1 7110485 7110787 -275082877 - AluSx SINE Alu -2 310 1 2498 73 3 0 chr1 7111320 7111623 -275082041 - AluSp SINE Alu -9 304 1 2191 59 0 0 chr1 7111908 7112162 -275081502 - AluY SINE Alu -14 297 44 1879 126 7 15 chr1 7112195 7112464 -275081200 + AluSx SINE Alu 1 267 -45 936 194 0 6 chr1 7112546 7112711 -275080953 - FAM SINE Alu -11 164 1 741 177 8 0 chr1 7112914 7113038 -275080626 + L1MC3 LINE L1 7241 7365 -420 2128 95 0 0 chr1 7113038 7113300 -275080364 + AluSc SINE Alu 1 262 -47 346 323 35 25 chr1 7113307 7113508 -275080156 + L1MEd LINE L1 43 245 -5874 1262 176 38 0 chr1 7113508 7113718 -275079946 + MER58A DNA MER1_type 1 218 -6 883 259 119 99 chr1 7113752 7113959 -275079705 + L1MEd LINE L1 269 471 -5648 2174 114 0 3 chr1 7113959 7114249 -275079415 + AluSq SINE Alu 1 289 -24 405 0 0 0 chr1 7114250 7114295 -275079369 + (GA)n Simple_repeat Simple_repeat 2 46 0 883 259 119 99 chr1 7114295 7114602 -275079062 + L1MEd LINE L1 471 771 -5348 1151 115 8 111 chr1 7114602 7114836 -275078828 + L1PB4 LINE L1 5946 6155 -1 883 259 119 99 chr1 7114836 7115195 -275078469 + L1MEd LINE L1 771 1162 -4957 1561 95 0 14 chr1 7115202 7115413 -275078251 + AluSc SINE Alu 102 309 0 647 261 75 37 chr1 7115759 7115956 -275077708 + L1MEd LINE L1 2114 2302 -3827 1854 186 0 3 chr1 7115956 7116291 -275077373 + AluSx SINE Alu 1 312 0 647 261 75 37 chr1 7116291 7116468 -275077196 + L1MEd LINE L1 2302 2502 -3627 1490 270 57 17 chr1 7116516 7116934 -275076730 + LTR16A LTR ERVL 16 450 0 247 283 52 98 chr1 7117348 7117521 -275076143 + MLT1K LTR MaLR 32 196 -392 701 212 117 35 chr1 7117615 7117846 -275075818 + MLT1K LTR MaLR 337 586 -2 600 150 10 0 chr1 7117896 7117996 -275075668 - L1PA13 LINE L1 -11 6152 6052 616 211 226 5 chr1 7118038 7118237 -275075427 + MIR SINE MIR 12 254 -8 244 278 112 58 chr1 7118238 7118437 -275075227 - L1ME LINE L1 -255 5866 5650 2106 123 14 0 chr1 7118437 7118730 -275074934 - AluSx SINE Alu -15 297 1 244 278 112 58 chr1 7118730 7118771 -275074893 - L1ME LINE L1 -471 5650 5613 207 97 0 0 chr1 7119108 7119139 -275074525 + L2 LINE L2 3239 3269 -3 212 0 0 108 chr1 7119378 7119393 -275074271 + (A)n Simple_repeat Simple_repeat 1 16 -17 2262 119 7 0 chr1 7119393 7119703 -275073961 + AluSx SINE Alu 1 312 0 212 0 0 108 chr1 7119703 7119724 -275073940 + (A)n Simple_repeat Simple_repeat 16 33 0 264 273 43 117 chr1 7120369 7120519 -275073145 + L2 LINE L2 2379 2500 -814 2079 127 0 29 chr1 7120519 7120833 -275072831 - AluJb SINE Alu -7 305 1 264 273 43 117 chr1 7120833 7120964 -275072700 + L2 LINE L2 2500 2639 -675 * 693 306 58 42 chr1 7120963 7121226 -275072438 + L2 LINE L2 2879 3153 -160 3222 66 50 0 chr1 7121226 7121266 -275072398 - MLT2A1 LTR ERVL 0 444 407 336 48 0 0 chr1 7121266 7121308 -275072356 + (TA)n Simple_repeat Simple_repeat 2 43 0 3222 66 50 0 chr1 7121308 7121690 -275071974 - MLT2A1 LTR ERVL -37 407 1 693 306 58 42 chr1 7121690 7121854 -275071810 + L2 LINE L2 3153 3313 0 285 328 29 23 chr1 7121902 7122076 -275071588 + L2 LINE L2 252 426 -2888 1530 143 18 94 chr1 7122245 7122573 -275071091 + AluJo SINE Alu 1 303 -9 2046 151 0 0 chr1 7122699 7123003 -275070661 - AluJb SINE Alu -8 304 1 2015 156 0 3 chr1 7123317 7123618 -275070046 + AluSx SINE Alu 1 300 -12 2312 86 3 0 chr1 7124275 7124565 -275069099 - AluSq SINE Alu -22 291 1 423 249 217 37 chr1 7125178 7125191 -275068473 - MIR SINE MIR 0 262 253 2077 139 0 0 chr1 7125191 7125492 -275068172 + AluSx SINE Alu 1 301 -11 423 249 217 37 chr1 7125492 7125695 -275067969 - MIR SINE MIR -9 253 7 180 0 0 0 chr1 7125963 7125983 -275067681 + (TTAA)n Simple_repeat Simple_repeat 3 22 0 2362 98 0 3 chr1 7126166 7126472 -275067192 + AluSq SINE Alu 1 305 -8 2153 129 7 0 chr1 7126806 7127146 -275066518 + AluSp SINE Alu 1 313 0 2472 58 0 0 chr1 7127306 7127599 -275066065 + AluSc SINE Alu 3 295 -14 234 0 0 0 chr1 7127626 7127652 -275066012 + (TG)n Simple_repeat Simple_repeat 2 27 0 24 53 0 0 chr1 7127970 7128008 -275065656 + AT_rich Low_complexity Low_complexity 1 38 0 260 332 0 37 chr1 7130306 7130493 -275063171 + (TCCCG)n Simple_repeat Simple_repeat 1 180 0 * 291 386 0 0 chr1 7130390 7130566 -275063098 + (CACCG)n Simple_repeat Simple_repeat 3 178 0 186 103 0 0 chr1 7131061 7131090 -275062574 + (CGG)n Simple_repeat Simple_repeat 2 30 0 24 0 0 0 chr1 7131292 7131316 -275062348 + GC_rich Low_complexity Low_complexity 1 24 0 230 238 181 29 chr1 7132827 7132932 -275060732 + L2 LINE L2 3190 3310 -3 1858 148 3 3 chr1 7133813 7134118 -275059546 + AluJb SINE Alu 1 305 -7 600 284 140 27 chr1 7134297 7134589 -275059075 + L2 LINE L2 2989 3313 0 270 317 36 3 chr1 7134601 7134724 -275058940 + MIR SINE MIR 6 140 -68 412 211 128 51 chr1 7134853 7135009 -275058655 + MIR SINE MIR 95 262 0 797 249 86 20 chr1 7135492 7135737 -275057927 + MIR SINE MIR 2 262 0 2086 103 31 0 chr1 7136547 7136839 -275056825 + AluSp SINE Alu 1 301 -12 192 40 0 0 chr1 7136843 7136868 -275056796 + (TTTG)n Simple_repeat Simple_repeat 2 26 0 265 306 174 15 chr1 7138378 7138574 -275055090 - L2 LINE L2 -898 2416 2190 28 0 0 0 chr1 7138999 7139027 -275054637 + GC_rich Low_complexity Low_complexity 1 28 0 412 188 188 62 chr1 7140318 7140446 -275053218 - L2 LINE L2 -2 3270 3127 367 309 216 10 chr1 7146310 7146504 -275047160 + MIR SINE MIR 17 250 -12 329 309 147 16 chr1 7146914 7147105 -275046559 - L2 LINE L2 -550 2764 2549 1926 100 0 45 chr1 7147762 7148071 -275045593 - AluSp SINE Alu -18 295 1 196 255 0 21 chr1 7148097 7148144 -275045520 + MIR SINE MIR 101 146 -62 2078 101 14 0 chr1 7148284 7148581 -275045083 - AluSx SINE Alu -11 301 1 2089 106 0 3 chr1 7148764 7149057 -275044607 + AluSq SINE Alu 1 292 -21 424 204 204 0 chr1 7149314 7149451 -275044213 - L1MD2 LINE L1 -1 6358 6194 2283 82 7 3 chr1 7149588 7149894 -275043770 + AluSp SINE Alu 1 307 -6 360 0 0 0 chr1 7149909 7149949 -275043715 + (GA)n Simple_repeat Simple_repeat 2 41 0 2261 81 0 3 chr1 7150089 7150386 -275043278 + AluSg SINE Alu 1 296 -14 2164 118 7 0 chr1 7151165 7151470 -275042194 + AluSx SINE Alu 1 307 -5 1854 91 84 0 chr1 7151470 7151744 -275041920 + AluSg1 SINE Alu 1 297 -12 236 29 0 29 chr1 7151744 7151778 -275041886 + (GGAA)n Simple_repeat Simple_repeat 1 33 0 2164 103 7 0 chr1 7154325 7154627 -275039037 + AluSx SINE Alu 1 304 -8 314 308 170 11 chr1 7155022 7155204 -275038460 + HAL1 LINE L1 820 1030 -1477 2030 121 14 0 chr1 7155204 7155501 -275038163 + AluSg SINE Alu 1 301 -9 1957 106 3 20 chr1 7155512 7155804 -275037860 + AluSc SINE Alu 9 295 -14 1762 79 64 19 chr1 7155808 7156109 -275037555 - AluSg SINE Alu 0 313 1 574 263 75 94 chr1 7156185 7156502 -275037162 + HAL1 LINE L1 1249 1557 -950 2116 114 0 13 chr1 7156502 7156819 -275036845 + AluSq SINE Alu 1 313 0 574 263 75 94 chr1 7156819 7156927 -275036737 + HAL1 LINE L1 1557 1666 -841 1914 129 0 10 chr1 7157064 7157359 -275036305 + AluSx SINE Alu 16 307 -5 22 0 0 0 chr1 7157420 7157442 -275036222 + AT_rich Low_complexity Low_complexity 1 22 0 716 101 0 0 chr1 7157442 7157541 -275036123 - L1MA2 LINE L1 0 6304 6206 22 56 0 0 chr1 7157571 7157607 -275036057 + AT_rich Low_complexity Low_complexity 1 36 0 1636 171 36 13 chr1 7157758 7158063 -275035601 + AluJb SINE Alu 1 312 0 1589 174 62 62 chr1 7158064 7158222 -275035442 + MSTD LTR MaLR 40 197 -199 2002 121 0 0 chr1 7158222 7158524 -275035140 - AluSx SINE Alu 0 302 1 1589 174 62 62 chr1 7158524 7158721 -275034943 + MSTD LTR MaLR 196 396 0 306 248 4 111 chr1 7158723 7158833 -275034831 + L1MEd LINE L1 895 970 -5149 2015 146 0 3 chr1 7158833 7159142 -275034522 + AluSx SINE Alu 1 308 -4 306 248 4 111 chr1 7159142 7159257 -275034407 + L1MEd LINE L1 970 1096 -5023 1641 98 43 35 chr1 7159257 7159513 -275034151 - MSTB1 LTR MaLR 0 432 175 2344 103 0 0 chr1 7159514 7159826 -275033838 + AluSx SINE Alu 1 312 0 711 173 43 7 chr1 7159834 7159973 -275033691 + L1MB5 LINE L1 5652 5795 -379 987 231 37 26 chr1 7159984 7160252 -275033412 + L1MB5 LINE L1 5904 6174 0 868 261 46 79 chr1 7160250 7160361 -275033303 + L1M4 LINE L1 3515 3628 -2518 * 2153 153 67 20 chr1 7160361 7160765 -275032899 + MSTB LTR MaLR 2 424 -2 868 261 46 79 chr1 7160765 7160792 -275032872 + L1M4 LINE L1 3628 3654 -2492 2182 88 0 3 chr1 7160792 7161089 -275032575 + AluY SINE Alu 1 296 -15 868 261 46 79 chr1 7161089 7161297 -275032367 + L1M4 LINE L1 3654 3844 -2302 2415 56 0 3 chr1 7161297 7161599 -275032065 + AluY SINE Alu 1 301 -10 868 261 46 79 chr1 7161599 7161732 -275031932 + L1M4 LINE L1 3844 3980 -2166 306 0 0 0 chr1 7161737 7161771 -275031893 + (TTTA)n Simple_repeat Simple_repeat 3 36 0 305 167 0 0 chr1 7161774 7161828 -275031836 - Alu SINE Alu -5 297 244 599 178 24 21 chr1 7161847 7161988 -275031676 + MER34B LTR ERV1 1 142 -400 351 197 0 0 chr1 7161987 7162053 -275031611 + AluJ/FRAM SINE Alu 233 298 -4 * 752 211 3 6 chr1 7162128 7162407 -275031257 + GA-rich Low_complexity Low_complexity 1 278 0 223 70 23 23 chr1 7162429 7162472 -275031192 + (GAAA)n Simple_repeat Simple_repeat 4 46 0 2051 120 0 7 chr1 7162579 7162871 -275030793 + AluSx SINE Alu 12 301 -11 376 143 32 0 chr1 7162916 7162979 -275030685 + U6 snRNA snRNA 1 65 -42 3070 145 25 13 chr1 7162992 7163328 -275030336 + L1MB3 LINE L1 5321 5652 -531 1957 130 3 0 chr1 7163328 7163628 -275030036 + AluSx SINE Alu 1 301 -11 3070 145 25 13 chr1 7163628 7163978 -275029686 + L1MB3 LINE L1 5652 6182 -1 1208 133 0 122 chr1 7164009 7164272 -275029392 + AluJb SINE Alu 69 299 -13 2174 94 0 25 chr1 7164421 7164739 -275028925 - AluSq SINE Alu -3 310 1 2222 100 0 0 chr1 7165554 7165853 -275027811 + AluSq SINE Alu 1 299 -14 2213 104 0 3 chr1 7166211 7166519 -275027145 + AluSg SINE Alu 2 308 -2 1100 113 12 26 chr1 7166705 7167307 -275026357 + (ATGGTG)n Simple_repeat Simple_repeat 1 593 0 2110 114 0 3 chr1 7168718 7169017 -275024647 - AluSg SINE Alu -12 298 1 1801 138 17 14 chr1 7169042 7169338 -275024326 + AluSx SINE Alu 2 298 -14 1785 142 24 0 chr1 7169396 7169684 -275023980 + AluJb SINE Alu 1 295 -17 1787 144 17 7 chr1 7169684 7169983 -275023681 + AluSx SINE Alu 1 302 -10 2243 91 3 10 chr1 7170114 7170422 -275023242 + AluSx SINE Alu 1 306 -6 587 279 157 39 chr1 7170591 7171024 -275022640 + L2 LINE L2 2829 3312 -1 231 217 29 29 chr1 7171428 7171497 -275022167 - MLT1K LTR MaLR -495 93 25 1940 143 0 7 chr1 7171580 7171887 -275021777 - AluJo SINE Alu -7 305 1 207 255 85 66 chr1 7173956 7174062 -275019602 - L2 LINE L2 -841 2473 2366 211 213 0 0 chr1 7174203 7174250 -275019414 + L2 LINE L2 3221 3267 -5 673 81 101 0 chr1 7174409 7174508 -275019156 + HY1 scRNA scRNA 2 110 -2 2110 100 3 37 chr1 7175105 7175426 -275018238 + AluSx SINE Alu 1 310 -2 2260 86 0 0 chr1 7175434 7175736 -275017928 + AluY SINE Alu 1 302 -9 623 278 57 5 chr1 7175749 7175958 -275017706 + MER58A DNA MER1_type 5 224 0 274 174 113 42 chr1 7175960 7176031 -275017633 + MIR SINE MIR 40 117 -91 328 262 170 7 chr1 7176120 7176261 -275017403 - MIR SINE MIR -79 183 20 747 159 0 36 chr1 7176394 7176532 -275017132 + FLAM_C SINE Alu 11 143 0 2214 83 0 17 chr1 7177214 7177516 -275016148 - AluY SINE Alu -13 298 2 1608 189 0 3 chr1 7177590 7177876 -275015788 + AluJb SINE Alu 1 285 -27 808 154 114 50 chr1 7177945 7178165 -275015499 + L1MC1 LINE L1 6100 6333 0 465 292 31 42 chr1 7178230 7178490 -275015174 + L1MC4a LINE L1 5688 5944 -1864 1780 148 10 13 chr1 7178527 7178830 -275014834 - AluJb SINE Alu -10 302 1 1180 76 0 13 chr1 7178842 7178999 -275014665 + AluSg/x SINE Alu 144 298 -14 581 114 0 0 chr1 7179017 7179096 -275014568 + AluSg SINE Alu 2 80 -230 2222 97 0 3 chr1 7179096 7179406 -275014258 + AluSg SINE Alu 1 309 -1 1657 118 0 0 chr1 7179406 7179641 -275014023 + AluSg SINE Alu 73 309 -3 714 175 32 0 chr1 7179808 7179934 -275013730 + FLAM_C SINE Alu 2 131 -2 2235 67 0 0 chr1 7180372 7180680 -275012984 + AluY SINE Alu 1 308 0 21 36 0 0 chr1 7181532 7181560 -275012104 + AT_rich Low_complexity Low_complexity 1 28 0 2299 88 7 3 chr1 7182238 7182544 -275011120 + AluSq SINE Alu 1 307 -6 2384 61 0 0 chr1 7182750 7183044 -275010620 - AluY SINE Alu -17 294 1 1608 164 0 50 chr1 7183046 7183364 -275010300 - AluJo SINE Alu -10 302 1 1387 77 0 6 chr1 7183466 7183648 -275010016 - AluSx SINE Alu -12 298 118 1896 91 0 0 chr1 7183648 7183901 -275009763 - AluSq SINE Alu -1 312 60 301 146 427 0 chr1 7184250 7184332 -275009332 - Charlie1 DNA MER1_type -3 2758 2642 1849 110 10 40 chr1 7184336 7184635 -275009029 - AluSx SINE Alu -22 290 1 885 146 0 0 chr1 7184635 7184765 -275008899 - AluSx SINE Alu -177 135 6 338 60 0 20 chr1 7184767 7184817 -275008847 + MADE1 DNA Mariner 32 80 0 1454 159 31 31 chr1 7184922 7185212 -275008452 - AluJo SINE Alu -22 290 1 192 152 0 0 chr1 7185384 7185417 -275008247 + (TTCA)n Simple_repeat Simple_repeat 2 34 0 2288 60 0 0 chr1 7185429 7185741 -275007923 - AluSq SINE Alu 0 312 1 1568 193 0 13 chr1 7187182 7187483 -275006181 - AluJo SINE Alu -15 297 1 2181 92 3 0 chr1 7187514 7187807 -275005857 + AluSg SINE Alu 1 294 -16 268 312 72 8 chr1 7188147 7188272 -275005392 + L1MC/D LINE L1 5727 5859 -1949 1895 154 0 3 chr1 7188575 7188873 -275004791 + AluSx SINE Alu 1 297 -15 2074 123 17 0 chr1 7189062 7189364 -275004300 - AluSg SINE Alu -3 307 1 1558 192 0 7 chr1 7189463 7189755 -275003909 - AluJo SINE Alu -22 290 1 4393 111 33 6 chr1 7189904 7190595 -275003069 + L1MA5A LINE L1 5587 6296 -1 1578 138 20 79 chr1 7190671 7190976 -275002688 - AluJo SINE Alu -25 287 1 820 203 48 0 chr1 7191403 7191590 -275002074 + AluJb SINE Alu 113 308 -4 288 260 0 0 chr1 7191686 7191759 -275001905 + (CCCA)n Simple_repeat Simple_repeat 3 75 0 187 312 117 0 chr1 7191759 7191836 -275001828 - L2 LINE L2 -19 3294 3209 913 176 0 0 chr1 7192150 7192298 -275001366 - FRAM SINE Alu -30 146 1 349 267 43 26 chr1 7192416 7192532 -275001132 - MER94 DNA DNA -16 118 1 483 285 130 36 chr1 7192590 7192867 -275000797 + L1MC/D LINE L1 5409 5711 -2097 733 233 158 0 chr1 7192978 7193180 -275000484 + MIR SINE MIR 8 241 -21 2101 106 7 3 chr1 7193279 7193572 -275000092 + AluSg1 SINE Alu 1 294 -15 1902 126 30 0 chr1 7193717 7194019 -274999645 + AluSx SINE Alu 1 311 -1 1576 164 39 4 chr1 7194033 7194314 -274999350 + AluJb SINE Alu 7 297 -15 21 0 0 0 chr1 7194630 7194651 -274999013 + AT_rich Low_complexity Low_complexity 1 21 0 181 213 75 150 chr1 7196183 7196263 -274997401 + L2 LINE L2 3222 3295 -18 1123 171 25 25 chr1 7196305 7196544 -274997120 - L1MA4 LINE L1 -8 6292 6054 754 83 148 0 chr1 7196544 7196652 -274997012 + MER84 LTR ERVI 1 124 -383 863 70 0 0 chr1 7196652 7196767 -274996897 - MER84-int LTR ERV1 -3598 1356 1242 1248 71 88 6 chr1 7196767 7196937 -274996727 + MER84 LTR ERVI 324 507 0 3796 137 83 27 chr1 7196946 7197309 -274996355 - L1MA4 LINE L1 -257 6043 5702 2000 138 3 0 chr1 7197309 7197614 -274996050 - AluSx SINE Alu -6 306 1 3796 137 83 27 chr1 7197614 7198201 -274995463 - L1MA4 LINE L1 -598 5702 5044 2071 116 7 0 chr1 7198201 7198511 -274995153 - AluSx SINE Alu 0 312 1 2248 115 0 0 chr1 7198540 7198852 -274994812 - AluSx SINE Alu 0 312 1 2186 91 0 7 chr1 7198905 7199202 -274994462 + AluSc SINE Alu 1 295 -14 2172 125 0 0 chr1 7199211 7199523 -274994141 - AluSx SINE Alu 0 312 1 24 0 0 0 chr1 7199609 7199633 -274994031 + AT_rich Low_complexity Low_complexity 1 24 0 1555 133 88 35 chr1 7199636 7199921 -274993743 + AluJo SINE Alu 2 301 -1 1912 109 28 7 chr1 7200195 7200478 -274993186 - AluSx SINE Alu -21 291 3 252 241 108 0 chr1 7200756 7200839 -274992825 + MLT1I LTR MaLR 46 137 -272 288 206 48 48 chr1 7200939 7201002 -274992662 + MLT1I LTR MaLR 240 302 -107 505 190 42 21 chr1 7201113 7201255 -274992409 - HAL1 LINE L1 -93 2414 2270 237 329 197 7 chr1 7201255 7201392 -274992272 - MIR SINE MIR -99 163 1 742 191 0 0 chr1 7201643 7201774 -274991890 - FLAM_A SINE Alu -2 131 1 2315 73 0 13 chr1 7202060 7202374 -274991290 + AluSq SINE Alu 1 310 -3 359 282 53 23 chr1 7202424 7202555 -274991109 + L2 LINE L2 3163 3297 -16 802 137 0 43 chr1 7203666 7203805 -274989859 - FLAM_C SINE Alu 0 133 1 2684 103 25 76 chr1 7203833 7204436 -274989228 - SVA Other Other -339 1047 476 5187 73 34 55 chr1 7204459 7205294 -274988370 - SVA Other Other -520 866 50 339 25 0 0 chr1 7205300 7205340 -274988324 + (GGGAGA)n Simple_repeat Simple_repeat 5 44 0 181 298 47 82 chr1 7205989 7206060 -274987604 + L2 LINE L2 2917 2989 -283 2304 91 3 0 chr1 7206060 7206369 -274987295 - AluSg SINE Alu 0 310 1 181 298 47 82 chr1 7206369 7206468 -274987196 + L2 LINE L2 2989 3081 -191 855 232 116 41 chr1 7206587 7206880 -274986784 - L2 LINE L2 -4 3309 2995 2260 84 0 0 chr1 7206881 7207178 -274986486 + AluSx SINE Alu 1 297 -15 824 225 78 45 chr1 7208342 7208586 -274985078 + MIR SINE MIR 2 253 -9 215 273 61 0 chr1 7208608 7208674 -274984990 + MIR SINE MIR 104 173 -89 2053 117 0 0 chr1 7208720 7209003 -274984661 - AluSx SINE Alu -29 283 1 189 354 73 0 chr1 7209059 7209141 -274984523 + MIR SINE MIR 175 262 0 1174 225 126 37 chr1 7209454 7209890 -274983774 + Charlie4a DNA MER1_type 27 501 -7 751 286 91 0 chr1 7209893 7210113 -274983551 + MIR SINE MIR 15 254 -8 180 296 0 0 chr1 7210279 7210323 -274983341 - L2 LINE L2 0 3313 3270 907 199 199 30 chr1 7210335 7210588 -274983076 - Zaphod DNA AcHobo -9 4022 3813 2191 98 0 0 chr1 7210588 7210883 -274982781 + AluSx SINE Alu 1 295 -17 907 199 199 30 chr1 7210883 7210995 -274982669 - Zaphod DNA AcHobo -218 3813 3595 * 990 224 98 35 chr1 7210993 7211484 -274982180 - Zaphod DNA AcHobo -3041 990 469 1393 125 5 5 chr1 7211486 7211702 -274981962 + AluJb SINE Alu 84 299 -13 667 248 159 37 chr1 7211760 7212087 -274981577 - Zaphod DNA AcHobo -3593 438 72 505 219 42 17 chr1 7212097 7212216 -274981448 + Zaphod DNA AcHobo 3905 4026 -5 180 125 0 0 chr1 7212778 7212810 -274980854 + (TTTA)n Simple_repeat Simple_repeat 2 33 0 2280 86 0 10 chr1 7212812 7213126 -274980538 - AluY SINE Alu 0 311 1 21 0 0 0 chr1 7213200 7213221 -274980443 + AT_rich Low_complexity Low_complexity 1 21 0 1747 171 10 0 chr1 7213493 7213792 -274979872 - AluJb SINE Alu -10 302 1 378 282 99 50 chr1 7214425 7214606 -274979058 - MIR SINE MIR -14 248 59 315 0 0 0 chr1 7215150 7215185 -274978479 + (TCC)n Simple_repeat Simple_repeat 1 35 0 431 213 11 33 chr1 7215232 7215415 -274978249 + CT-rich Low_complexity Low_complexity 2 180 0 1648 123 82 10 chr1 7215428 7215759 -274977905 - AluSq SINE Alu 0 352 1 218 275 113 65 chr1 7215940 7216169 -274977495 + MIR SINE MIR 20 259 -3 679 228 132 0 chr1 7217633 7217800 -274975864 + MIR SINE MIR 68 256 -6 2320 87 0 0 chr1 7218055 7218354 -274975310 - AluSx SINE Alu -13 299 1 33 25 0 0 chr1 7219328 7219368 -274974296 + AT_rich Low_complexity Low_complexity 1 40 0 1508 150 70 28 chr1 7219929 7220216 -274973448 + AluJb SINE Alu 1 299 -13 762 214 46 100 chr1 7220467 7220747 -274972917 + MER5C DNA MER1_type 8 272 -52 1972 105 3 7 chr1 7220932 7221258 -274972406 - AluSq SINE Alu 0 325 1 314 288 137 7 chr1 7221433 7221572 -274972092 - MIR SINE MIR 0 262 106 1269 137 27 41 chr1 7221623 7221842 -274971822 - AluJo SINE Alu -90 222 7 281 311 39 10 chr1 7221851 7221954 -274971710 - MIR SINE MIR -150 112 7 2171 110 7 0 chr1 7222655 7222963 -274970701 - AluSg SINE Alu 0 310 1 1563 154 16 38 chr1 7222979 7223298 -274970366 - AluJo SINE Alu 0 312 1 2091 105 0 23 chr1 7223352 7223657 -274970007 - AluSx SINE Alu -14 298 1 1542 115 165 11 chr1 7223677 7223937 -274969727 - AluSg SINE Alu 0 300 1 825 186 32 50 chr1 7224338 7224559 -274969105 + MER20 DNA MER1_type 3 219 0 708 111 0 0 chr1 7224630 7224738 -274968926 + (TG)n Simple_repeat Simple_repeat 1 108 0 180 277 21 0 chr1 7224960 7225007 -274968657 + MIR SINE MIR 201 248 -14 2196 79 24 0 chr1 7225238 7225530 -274968134 - AluSp SINE Alu -14 299 1 1555 273 67 62 chr1 7225613 7226547 -274967117 - L1ME3A LINE L1 -30 6140 5188 1590 160 3 42 chr1 7226604 7226891 -274966773 - AluJo SINE Alu -11 301 26 482 114 29 0 chr1 7227043 7227113 -274966551 + tRNA-Glu-GAG tRNA tRNA 1 72 -3 2284 80 10 3 chr1 7227124 7227424 -274966240 + AluSq SINE Alu 1 302 -11 3682 221 70 14 chr1 7227444 7227791 -274965873 - L1MD2 LINE L1 -13 6740 6414 1320 147 184 109 chr1 7227791 7227925 -274965739 - MER65A LTR ERV1 0 445 322 2214 98 0 16 chr1 7227925 7228240 -274965424 + AluSx SINE Alu 1 310 -2 1320 147 184 109 chr1 7228240 7228458 -274965206 - MER65A LTR ERV1 -123 322 122 191 61 30 0 chr1 7228458 7228491 -274965173 + (TTTG)n Simple_repeat Simple_repeat 3 36 0 1772 136 45 0 chr1 7228495 7228782 -274964882 - AluSx SINE Alu -12 300 1 1320 147 184 109 chr1 7228782 7228837 -274964827 - MER65A LTR ERV1 -325 120 1 3682 221 70 14 chr1 7228837 7229709 -274963955 - L1MD2 LINE L1 -339 6414 5398 999 125 0 7 chr1 7229712 7229864 -274963800 - AluJb SINE Alu -18 294 144 2285 152 28 54 chr1 7229874 7230303 -274963361 - LTR3 LTR ERVK -10 422 5 873 133 0 0 chr1 7230318 7230446 -274963218 - FLAM_C SINE Alu -11 132 5 1358 228 54 50 chr1 7230451 7230916 -274962748 - L1MD2 LINE L1 -1144 5396 4930 1721 148 19 0 chr1 7230917 7231181 -274962483 - Tigger3b DNA MER2_type 0 1231 963 2007 119 0 0 chr1 7231192 7231470 -274962194 + AluSx SINE Alu 2 279 -33 3599 104 2 4 chr1 7231470 7231950 -274961714 + MER1A DNA MER1_type 51 529 0 * 4739 129 38 32 chr1 7231950 7232076 -274961588 - Tigger3b DNA MER2_type -2195 833 709 1977 102 42 0 chr1 7232076 7232360 -274961304 - AluSq SINE Alu -17 296 1 4739 129 38 32 chr1 7232360 7232732 -274960932 - Tigger3b DNA MER2_type -2319 709 341 275 0 29 0 chr1 7232732 7232767 -274960897 + (TTTG)n Simple_repeat Simple_repeat 1 36 0 1888 116 4 4 chr1 7232770 7233047 -274960617 - AluSx SINE Alu -35 277 1 369 0 0 0 chr1 7233056 7233097 -274960567 + (TA)n Simple_repeat Simple_repeat 2 42 0 4739 129 38 32 chr1 7233097 7233411 -274960253 - Tigger3b DNA MER2_type -2695 333 1 519 208 33 0 chr1 7233413 7233533 -274960131 - L1MD2 LINE L1 -1612 4928 4805 1639 165 3 14 chr1 7233542 7233833 -274959831 - AluJo SINE Alu -22 290 3 1633 250 63 39 chr1 7233835 7234191 -274959473 - L1MD2 LINE L1 -5515 1025 679 2279 101 0 0 chr1 7234191 7234497 -274959167 + AluSg SINE Alu 1 306 -4 1633 250 63 39 chr1 7234497 7234562 -274959102 - L1MD2 LINE L1 -5861 679 617 2045 133 0 0 chr1 7234562 7234862 -274958802 - AluSx SINE Alu -12 300 1 1633 250 63 39 chr1 7234862 7235029 -274958635 - L1MD2 LINE L1 -5923 617 122 2219 70 0 11 chr1 7235692 7236006 -274957658 - AluSg1 SINE Alu 0 311 1 2051 116 0 0 chr1 7236009 7236338 -274957326 - AluSq SINE Alu 0 329 1 1592 149 52 21 chr1 7236728 7237016 -274956648 - AluJb SINE Alu -15 297 1 904 138 14 0 chr1 7237678 7237816 -274955848 - FAM SINE Alu -28 157 18 1958 128 30 0 chr1 7237870 7238166 -274955498 - AluSx SINE Alu -7 305 1 369 313 23 31 chr1 7238166 7238294 -274955370 - MLT1I LTR MaLR -80 329 203 760 252 45 77 chr1 7238442 7238725 -274954939 - L1MC/D LINE L1 -746 5400 5315 1697 145 46 3 chr1 7238725 7239008 -274954656 + AluJb SINE Alu 1 295 -17 760 252 45 77 chr1 7239008 7239102 -274954562 - L1MC/D LINE L1 -831 5315 5219 1832 148 0 7 chr1 7239106 7239390 -274954274 + AluSq SINE Alu 1 282 -31 222 116 0 0 chr1 7239393 7239436 -274954228 + (TA)n Simple_repeat Simple_repeat 2 44 0 36 23 0 0 chr1 7239457 7239500 -274954164 + AT_rich Low_complexity Low_complexity 1 43 0 803 112 0 0 chr1 7239517 7239624 -274954040 - AluJb SINE Alu -201 111 5 1052 303 64 30 chr1 7239631 7240161 -274953503 - L1MC/D LINE L1 -922 5224 4665 2182 94 3 7 chr1 7240161 7240460 -274953204 + AluSx SINE Alu 1 298 -14 1052 303 64 30 chr1 7240460 7240599 -274953065 - L1MC/D LINE L1 -1481 4665 4532 2233 96 0 3 chr1 7241706 7242008 -274951656 + AluSx SINE Alu 4 304 -8 2164 123 0 0 chr1 7242018 7242328 -274951336 + AluSx SINE Alu 1 310 -2 1401 149 0 5 chr1 7242338 7242552 -274951112 + AluJb SINE Alu 85 297 -15 356 181 12 0 chr1 7243125 7243208 -274950456 + G-rich Low_complexity Low_complexity 2 85 0 1899 67 0 4 chr1 7243378 7243632 -274950032 + AluY SINE Alu 1 253 -58 192 97 0 0 chr1 7243632 7243663 -274950001 + (A)n Simple_repeat Simple_repeat 1 31 0 783 172 8 0 chr1 7243683 7243817 -274949847 + FLAM_C SINE Alu 9 143 0 1972 171 97 95 chr1 7243916 7244526 -274949138 - LTR36 LTR ERV1 0 611 1 1598 153 0 8 chr1 7244679 7244940 -274948724 + AluSx SINE Alu 44 302 -10 1904 125 90 39 chr1 7244940 7245275 -274948389 - MER101 LTR ERV1 -122 352 1 2330 61 7 0 chr1 7245474 7245771 -274947893 - AluSx SINE Alu -13 299 1 476 312 158 14 chr1 7245804 7246019 -274947645 + MIR SINE MIR 7 252 -10 1324 126 0 102 chr1 7246385 7246678 -274946986 + AluJo SINE Alu 47 309 -3 3534 120 47 34 chr1 7246686 7247304 -274946360 - MER39B LTR ERV1 -2 651 26 2131 89 28 3 chr1 7247478 7247769 -274945895 + AluSx SINE Alu 1 298 -14 2089 104 3 10 chr1 7247819 7248116 -274945548 - AluSx SINE Alu -4 308 14 21 0 0 0 chr1 7248122 7248143 -274945521 + AT_rich Low_complexity Low_complexity 1 21 0 928 92 0 0 chr1 7248160 7248279 -274945385 + THE1B LTR MaLR 1 119 -245 2012 103 50 0 chr1 7248301 7248583 -274945081 + AluSg SINE Alu 1 296 -14 1032 97 14 7 chr1 7248585 7248729 -274944935 + THE1B LTR MaLR 220 364 0 2003 111 16 29 chr1 7248911 7249076 -274944588 - AluSx SINE Alu -10 302 141 1872 128 17 0 chr1 7249076 7249372 -274944292 - AluSx SINE Alu -11 301 1 2003 111 16 29 chr1 7249372 7249512 -274944152 - AluSx SINE Alu -171 141 1 1235 185 65 45 chr1 7249734 7250026 -274943638 - AluJo SINE Alu -3 299 2 1762 144 17 17 chr1 7250124 7250423 -274943241 - AluSx SINE Alu -13 299 1 887 27 0 9 chr1 7250881 7250992 -274942672 + (TTTC)n Simple_repeat Simple_repeat 3 112 0 1528 158 3 67 chr1 7251686 7251856 -274941808 - MLT2D LTR ERVL -135 279 100 606 63 13 0 chr1 7251856 7251935 -274941729 + MADE1 DNA Mariner 1 80 0 1528 158 3 67 chr1 7251935 7251949 -274941715 - MLT2D LTR ERVL -314 100 87 2160 85 13 7 chr1 7251949 7252255 -274941409 + AluSp SINE Alu 1 308 -5 1528 158 3 67 chr1 7252255 7252367 -274941297 - MLT2D LTR ERVL -327 87 1 2225 96 3 0 chr1 7252466 7252769 -274940895 - AluSx SINE Alu -8 304 1 1555 154 0 42 chr1 7252891 7253176 -274940488 - AluJo SINE Alu -6 306 34 29 70 0 0 chr1 7253273 7253330 -274940334 + AT_rich Low_complexity Low_complexity 1 57 0 1766 134 10 10 chr1 7253703 7253988 -274939676 + AluSx SINE Alu 1 286 -21 191 61 30 0 chr1 7253988 7254021 -274939643 + (TTAA)n Simple_repeat Simple_repeat 1 34 0 722 219 3 0 chr1 7254050 7254374 -274939290 + GA-rich Low_complexity Low_complexity 1 324 0 186 43 0 0 chr1 7254380 7254403 -274939261 + (GGGA)n Simple_repeat Simple_repeat 3 25 0 215 361 37 9 chr1 7254502 7254610 -274939054 - MIR3 SINE MIR -21 187 77 697 142 50 8 chr1 7254672 7254792 -274938872 + AluJ SINE Alu 2 126 -186 376 320 12 17 chr1 7255362 7255534 -274938130 + L2 LINE L2 2818 2988 -325 193 214 24 0 chr1 7255560 7255602 -274938062 + L2 LINE L2 2313 2355 -959 431 151 35 47 chr1 7255673 7255759 -274937905 + MIR SINE MIR 120 204 -58 225 0 0 0 chr1 7255760 7255785 -274937879 + (CA)n Simple_repeat Simple_repeat 2 26 0 265 244 0 26 chr1 7255792 7255870 -274937794 + (TA)n Simple_repeat Simple_repeat 2 77 0 239 222 19 0 chr1 7255870 7255924 -274937740 + MIR SINE MIR 196 250 -12 453 285 94 43 chr1 7255968 7256203 -274937461 + L2 LINE L2 2425 2671 -643 811 302 14 14 chr1 7256226 7256577 -274937087 + L1M4 LINE L1 3340 3690 -2456 2006 124 0 13 chr1 7256598 7256897 -274936767 - AluSx SINE Alu -17 295 1 1714 174 7 7 chr1 7256972 7257277 -274936387 - AluJb SINE Alu -7 305 1 925 226 157 32 chr1 7257277 7257670 -274935994 + MLT1F1 LTR MaLR 28 546 -21 999 150 0 6 chr1 7257719 7257879 -274935785 + AluJ SINE Alu 136 294 -18 25 51 0 0 chr1 7257922 7257961 -274935703 + AT_rich Low_complexity Low_complexity 1 39 0 2193 180 78 32 chr1 7258062 7258132 -274935532 + LTR42 LTR ERVL 1 66 -429 2210 123 153 5 chr1 7258132 7258505 -274935159 + MSTA LTR MaLR 1 428 0 2193 180 78 32 chr1 7258505 7258650 -274935014 + LTR42 LTR ERVL 66 203 -292 2113 59 0 7 chr1 7258650 7258920 -274934744 + AluY SINE Alu 36 303 -8 2193 180 78 32 chr1 7258920 7259176 -274934488 + LTR42 LTR ERVL 203 495 0 1386 264 82 40 chr1 7259177 7259505 -274934159 + L1M4 LINE L1 4099 4412 -1734 2187 92 0 10 chr1 7259505 7259800 -274933864 + AluSq SINE Alu 1 292 -21 1386 264 82 40 chr1 7259800 7260191 -274933473 + L1M4 LINE L1 4412 4848 -1298 21 36 0 0 chr1 7260353 7260381 -274933283 + AT_rich Low_complexity Low_complexity 1 28 0 2106 105 0 7 chr1 7260394 7260689 -274932975 + AluSx SINE Alu 1 293 -19 34 24 0 0 chr1 7260792 7260833 -274932831 + AT_rich Low_complexity Low_complexity 1 41 0 231 211 18 0 chr1 7260994 7261051 -274932613 - L1 LINE L1 -2584 3562 3505 289 214 48 24 chr1 7261071 7261155 -274932509 - L1 LINE L1 -1143 5003 4918 2126 127 0 0 chr1 7261997 7262305 -274931359 - AluSq SINE Alu -5 308 1 613 125 0 0 chr1 7262453 7262541 -274931123 - AluJo/FRAM SINE Alu -22 290 203 1062 93 7 0 chr1 7262542 7262692 -274930972 - AluSg SINE Alu -159 151 1 183 357 0 0 chr1 7262726 7262796 -274930868 + MER5A DNA MER1_type 10 79 -110 1829 147 30 0 chr1 7262918 7263218 -274930446 + AluJb SINE Alu 1 309 -3 198 167 0 0 chr1 7263227 7263263 -274930401 + A-rich Low_complexity Low_complexity 1 36 0 229 341 35 12 chr1 7263384 7263469 -274930195 + MIR3 SINE MIR 13 99 -109 1428 153 81 0 chr1 7263872 7264161 -274929503 - AluJb SINE Alu 0 310 1 193 234 141 16 chr1 7264295 7264359 -274929305 - L2 LINE L2 -1 3271 3200 2214 192 24 34 chr1 7264413 7264605 -274929059 + MLT1D LTR MaLR 5 197 -308 1927 120 0 35 chr1 7264605 7264922 -274928742 + AluSx SINE Alu 1 306 -6 2214 192 24 34 chr1 7264922 7265235 -274928429 + MLT1D LTR MaLR 197 505 0 556 229 54 34 chr1 7265404 7265609 -274928055 - L1ME2 LINE L1 -78 6086 5878 1629 190 146 39 chr1 7265628 7265792 -274927872 - L1MA8 LINE L1 -2 6289 6144 626 0 0 13 chr1 7265792 7265867 -274927797 + (TTTC)n Simple_repeat Simple_repeat 3 76 0 1589 110 0 0 chr1 7265867 7266095 -274927569 - AluSx SINE Alu -31 281 54 1629 190 146 39 chr1 7266095 7266550 -274927114 - L1MA8 LINE L1 -146 6145 5590 853 182 0 24 chr1 7266579 7266744 -274926920 - AluJo SINE Alu -113 199 39 413 210 59 25 chr1 7266809 7266928 -274926736 - L1ME2 LINE L1 -409 5712 5590 459 108 0 0 chr1 7267250 7267315 -274926349 - AluSx SINE Alu -14 298 234 2159 82 0 3 chr1 7267315 7267607 -274926057 - AluY SINE Alu -20 291 1 1573 111 11 73 chr1 7267608 7267869 -274925795 - AluSx SINE Alu -67 245 1 1697 166 0 57 chr1 7267919 7268250 -274925414 - AluJb SINE Alu 0 312 1 477 277 48 32 chr1 7268344 7268532 -274925132 - MIR SINE MIR -44 218 28 256 311 261 23 chr1 7268518 7268824 -274924840 - L3 LINE CR1 -258 1319 941 * 1424 138 59 45 chr1 7269613 7269903 -274923761 - AluJb SINE Alu -7 305 12 2146 90 33 0 chr1 7270321 7270621 -274923043 - AluSg SINE Alu 0 310 1 224 118 0 59 chr1 7271454 7271505 -274922159 + (CCCCCA)n Simple_repeat Simple_repeat 5 52 0 216 312 13 52 chr1 7271459 7271613 -274922051 + (CCCCG)n Simple_repeat Simple_repeat 1 148 0 * 229 309 32 16 chr1 7271689 7271812 -274921852 + (CCCCG)n Simple_repeat Simple_repeat 5 129 0 991 129 11 0 chr1 7272227 7272405 -274921259 + (TGGA)n Simple_repeat Simple_repeat 1 180 0 775 150 29 0 chr1 7272432 7272605 -274921059 + (TGGA)n Simple_repeat Simple_repeat 1 178 0 191 179 24 36 chr1 7272618 7272702 -274920962 + (TGGA)n Simple_repeat Simple_repeat 4 86 0 2014 137 0 23 chr1 7272783 7273089 -274920575 + AluJb SINE Alu 1 299 -13 203 217 188 29 chr1 7273154 7273223 -274920441 - L2 LINE L2 -7 3306 3227 1145 139 414 0 chr1 7273223 7273314 -274920350 - Tigger1 DNA MER2_type 0 2418 2366 1584 94 115 0 chr1 7273314 7273549 -274920115 + AluSp SINE Alu 37 298 -15 1145 139 414 0 chr1 7273549 7273701 -274919963 - Tigger1 DNA MER2_type -52 2366 2074 15623 155 34 25 chr1 7273712 7275041 -274918623 - L1MDa LINE L1 -11 6686 5370 1573 189 0 0 chr1 7275041 7275337 -274918327 - AluJo SINE Alu -14 298 3 15623 155 34 25 chr1 7275337 7277111 -274916553 - L1MDa LINE L1 -1327 5370 3613 1685 157 0 20 chr1 7277111 7277405 -274916259 - AluJo SINE Alu -12 300 13 15623 155 34 25 chr1 7277405 7277632 -274916032 - L1MDa LINE L1 -3084 3613 3389 1757 174 0 0 chr1 7277632 7277933 -274915731 - AluSx SINE Alu 0 301 1 15623 155 34 25 chr1 7277933 7278679 -274914985 - L1MDa LINE L1 -3308 3389 2571 642 193 0 0 chr1 7278683 7278792 -274914872 - FLAM_A SINE Alu -16 126 18 4108 127 34 52 chr1 7278797 7279505 -274914159 - L1M2 LINE L1 -3960 3249 2555 2305 88 0 0 chr1 7279505 7279799 -274913865 - AluSg SINE Alu -16 294 1 4108 127 34 52 chr1 7279799 7279884 -274913780 - L1M2 LINE L1 -4654 2555 2470 2493 235 223 50 chr1 7279888 7280235 -274913429 - L1M2 LINE L1 -4860 2349 2063 2152 108 10 3 chr1 7280235 7280542 -274913122 - AluSc SINE Alu 0 309 1 2493 235 223 50 chr1 7280542 7281460 -274912204 - L1M2 LINE L1 -5146 2063 947 873 285 169 24 chr1 7281464 7281969 -274911695 - L1M2 LINE L1 -5601 1608 1111 2051 133 39 47 chr1 7281973 7282018 -274911646 - THE1C LTR MaLR 0 428 384 2460 64 0 0 chr1 7282018 7282329 -274911335 + AluY SINE Alu 1 311 0 2051 133 39 47 chr1 7282329 7282697 -274910967 - THE1C LTR MaLR -44 384 1 3600 185 100 3 chr1 7282697 7283417 -274910247 - L1M2 LINE L1 -6418 791 2 13088 124 18 25 chr1 7283467 7285062 -274908602 - Tigger1 DNA MER2_type -341 2077 499 2449 55 3 7 chr1 7285062 7285372 -274908292 - AluSc SINE Alu 0 309 1 13088 124 18 25 chr1 7285372 7285865 -274907799 - Tigger1 DNA MER2_type -1919 499 4 1621 219 119 30 chr1 7286096 7286593 -274907071 + MER90 LTR ERV1 74 614 0 1843 172 50 34 chr1 7286906 7287290 -274906374 - MLT1B LTR MaLR 0 390 1 191 263 121 30 chr1 7288167 7288266 -274905398 + MIR SINE MIR 45 152 -56 1603 155 129 35 chr1 7288312 7288654 -274905010 - MLT1A2 LTR MaLR 0 374 1 1617 191 15 61 chr1 7289412 7289491 -274904173 - MLT1B LTR MaLR 0 390 309 1998 109 3 0 chr1 7289491 7289797 -274903867 - AluSx SINE Alu 0 307 1 1617 191 15 61 chr1 7289797 7290125 -274903539 - MLT1B LTR MaLR -81 309 1 2124 120 0 0 chr1 7290222 7290531 -274903133 + AluSq SINE Alu 1 309 -4 1137 136 61 48 chr1 7291367 7291438 -274902226 + MLT1B LTR MaLR 1 70 -320 1644 164 20 10 chr1 7291438 7291736 -274901928 - AluJo SINE Alu -11 301 1 1137 136 61 48 chr1 7291736 7291892 -274901772 + MLT1B LTR MaLR 70 231 -159 833 141 36 123 chr1 7292462 7292513 -274901151 + MLT1B LTR MaLR 183 237 -153 1851 239 80 15 chr1 7292513 7293110 -274900554 - LTR48B LTR ERV1 -4 640 5 833 141 36 123 chr1 7293110 7293278 -274900386 + MLT1B LTR MaLR 237 383 -7 407 203 134 80 chr1 7293468 7293655 -274900009 + MLT1F1 LTR MaLR 366 562 -5 923 222 108 90 chr1 7293750 7293981 -274899683 - L2 LINE L2 0 3313 3088 2297 64 3 0 chr1 7293981 7294264 -274899400 + AluSp SINE Alu 1 284 -29 1299 13 0 0 chr1 7294264 7294413 -274899251 + (CAATA)n Simple_repeat Simple_repeat 2 150 0 923 222 108 90 chr1 7294413 7294558 -274899106 - L2 LINE L2 -224 3089 2929 2053 119 50 74 chr1 7294573 7294901 -274898763 + MSTB1 LTR MaLR 40 358 -74 597 77 0 0 chr1 7294901 7294979 -274898685 - MADE1 DNA Mariner -2 78 1 2053 119 50 74 chr1 7294979 7295053 -274898611 + MSTB1 LTR MaLR 358 432 0 2044 74 7 42 chr1 7295167 7295476 -274898188 + AluSx SINE Alu 1 298 -14 206 175 53 0 chr1 7295713 7295770 -274897894 + MIR SINE MIR 37 96 -166 621 273 33 0 chr1 7295871 7296054 -274897610 + L2 LINE L2 1711 1899 -1415 666 295 74 8 chr1 7296056 7296314 -274897350 + L2 LINE L2 2285 2559 -755 2004 136 3 0 chr1 7296330 7296631 -274897033 - AluSx SINE Alu -10 302 1 863 192 6 6 chr1 7296648 7296830 -274896834 + AluJo SINE Alu 127 308 -4 841 268 242 3 chr1 7296830 7297315 -274896349 + L2 LINE L2 2706 3311 -2 1751 151 0 4 chr1 7297385 7297664 -274896000 - AluJb SINE Alu -22 290 13 345 248 62 31 chr1 7297811 7297940 -274895724 + L2 LINE L2 2921 3053 -260 239 137 0 39 chr1 7298105 7298156 -274895508 + (TTAAA)n Simple_repeat Simple_repeat 2 50 0 1867 134 3 24 chr1 7298509 7298807 -274894857 + AluSx SINE Alu 1 292 -20 1777 163 10 0 chr1 7299521 7299815 -274893849 - AluJb SINE Alu -9 303 7 470 45 0 15 chr1 7300247 7300313 -274893351 + (TTCC)n Simple_repeat Simple_repeat 2 66 0 1948 118 0 0 chr1 7300334 7300613 -274893051 - AluSx SINE Alu -33 279 1 368 271 132 60 chr1 7300941 7301222 -274892442 + L2 LINE L2 3005 3305 -8 223 122 0 49 chr1 7301192 7301233 -274892431 - L2 LINE L2 0 3313 3275 * 1142 179 9 0 chr1 7301261 7301392 -274892272 + AluJo SINE Alu 1 137 -175 1383 195 28 21 chr1 7301392 7301709 -274891955 + AluJb SINE Alu 1 319 0 1142 179 9 0 chr1 7301709 7301794 -274891870 + AluJo SINE Alu 137 220 -92 1795 119 0 0 chr1 7301825 7302085 -274891579 - AluSq SINE Alu -48 265 6 330 169 60 12 chr1 7302095 7302178 -274891486 - L1M4 LINE L1 -946 5200 5114 * 1100 128 58 66 chr1 7302171 7302215 -274891449 - L1MA8 LINE L1 -11 6280 6237 2194 107 0 0 chr1 7302215 7302513 -274891151 - AluSq SINE Alu -15 298 1 231 36 0 0 chr1 7302516 7302544 -274891120 + (TTA)n Simple_repeat Simple_repeat 1 28 0 1100 128 58 66 chr1 7302544 7302738 -274890926 - L1MA8 LINE L1 -56 6235 6040 260 247 43 21 chr1 7302741 7302834 -274890830 - L1M4 LINE L1 -1023 5123 5029 1609 128 115 35 chr1 7302851 7303022 -274890642 - AluJb SINE Alu -1 311 106 2311 92 0 0 chr1 7303022 7303328 -274890336 - AluSg SINE Alu -4 306 1 1609 128 115 35 chr1 7303328 7303444 -274890220 - AluJb SINE Alu -206 106 1 319 284 157 41 chr1 7303470 7303667 -274889997 - L2 LINE L2 -564 2750 2531 409 267 82 20 chr1 7306905 7307051 -274886613 + MIR SINE MIR 105 259 -3 2213 101 0 0 chr1 7307123 7307421 -274886243 + AluSx SINE Alu 2 299 -13 2227 71 14 0 chr1 7307881 7308164 -274885500 + AluSq SINE Alu 1 287 -26 372 281 170 7 chr1 7308361 7308514 -274885150 + MER5A DNA MER1_type 12 189 0 1769 138 14 0 chr1 7308575 7308857 -274884807 + AluSx SINE Alu 1 286 -26 253 68 45 0 chr1 7308858 7308902 -274884762 + (CAATA)n Simple_repeat Simple_repeat 2 47 0 1789 129 37 0 chr1 7308933 7309225 -274884439 - AluJb SINE Alu 0 302 1 1626 188 10 0 chr1 7310036 7310368 -274883296 + AluSx SINE Alu 1 335 0 2308 63 10 3 chr1 7311002 7311304 -274882360 + AluY SINE Alu 1 304 -7 672 284 48 22 chr1 7311563 7311792 -274881872 + MIR SINE MIR 28 262 0 366 100 0 0 chr1 7311956 7312006 -274881658 + MER85 DNA T2_type 90 139 0 207 196 0 0 chr1 7313316 7313362 -274880302 + A-rich Low_complexity Low_complexity 1 46 0 2058 118 3 0 chr1 7314875 7315171 -274878493 - AluSg SINE Alu -13 297 1 1475 156 67 15 chr1 7315214 7315484 -274878180 + MER7A DNA MER2_type 1 282 -64 1691 160 65 7 chr1 7315693 7316000 -274877664 + L1M4c LINE L1 13 337 -6047 8602 152 51 29 chr1 7316003 7316141 -274877523 + L1M4c LINE L1 711 844 -5538 1565 96 13 22 chr1 7316141 7316371 -274877293 - MER30 DNA MER1_type -2 228 1 8602 152 51 29 chr1 7316371 7316488 -274877176 + L1M4c LINE L1 844 957 -5425 1620 157 52 0 chr1 7316488 7316775 -274876889 + AluJo SINE Alu 5 306 -6 1797 155 34 0 chr1 7316775 7317071 -274876593 + AluJo SINE Alu 1 307 -5 8602 152 51 29 chr1 7317071 7318619 -274875045 + L1M4c LINE L1 956 2556 -3826 1454 163 45 7 chr1 7318632 7318704 -274874960 + L1MB3 LINE L1 5882 5950 -233 1939 120 32 0 chr1 7318704 7318987 -274874677 + AluSx SINE Alu 13 304 -8 1454 163 45 7 chr1 7318987 7319202 -274874462 + L1MB3 LINE L1 5950 6180 -3 1418 139 46 8 chr1 7319353 7319591 -274874073 - AluJo SINE Alu -56 256 10 262 298 92 83 chr1 7320003 7320231 -274873433 + MIR SINE MIR 33 262 0 2000 115 7 3 chr1 7320913 7321201 -274872463 + AluSx SINE Alu 1 289 -23 1465 109 0 0 chr1 7321201 7321403 -274872261 + AluSg/x SINE Alu 106 307 -3 198 248 85 43 chr1 7321780 7321921 -274871743 + L2 LINE L2 723 869 -2445 376 353 147 9 chr1 7321987 7322449 -274871215 + L2 LINE L2 1026 1551 -1763 27 73 0 0 chr1 7322558 7322613 -274871051 + AT_rich Low_complexity Low_complexity 1 55 0 1658 171 7 14 chr1 7322634 7322940 -274870724 + AluJo SINE Alu 1 304 0 8809 211 92 22 chr1 7322958 7323172 -274870492 + L1ME1 LINE L1 1846 2043 -4172 2003 121 13 3 chr1 7323172 7323478 -274870186 + AluSx SINE Alu 1 309 -3 8809 211 92 22 chr1 7323478 7324390 -274869274 + L1ME1 LINE L1 2043 2889 -3326 984 189 6 0 chr1 7324390 7324554 -274869110 + FRAM SINE Alu 1 165 -1 8809 211 92 22 chr1 7324554 7324719 -274868945 + L1ME1 LINE L1 2889 3041 -3174 2050 128 0 3 chr1 7324719 7325025 -274868639 + AluSg SINE Alu 1 305 -5 8809 211 92 22 chr1 7325025 7326781 -274866883 + L1ME1 LINE L1 3041 5092 -1123 1316 222 33 3 chr1 7326788 7327090 -274866574 + L1ME1 LINE L1 5918 6228 -7 2651 165 77 0 chr1 7327610 7328076 -274865588 + Tigger7 DNA MER2_type 1 502 -231 1114 125 35 25 chr1 7328075 7328275 -274865389 + Tigger7 DNA MER2_type 2386 2587 0 * 404 299 52 15 chr1 7328453 7328587 -274865077 - L2 LINE L2 -6 3307 3169 * 541 296 77 0 chr1 7328571 7328767 -274864897 - MIR SINE MIR -50 212 2 820 107 25 16 chr1 7331349 7331470 -274862194 - AluSc SINE Alu -56 253 132 2252 129 3 0 chr1 7331471 7331782 -274861882 - AluSq SINE Alu -1 312 1 360 308 61 20 chr1 7331795 7332042 -274861622 - L1MC4a LINE L1 -1837 5971 5715 231 100 0 0 chr1 7332069 7332109 -274861555 - L1MA4 LINE L1 -3 6297 6258 596 204 107 51 chr1 7332284 7332500 -274861164 + L1MEc LINE L1 40 267 -6129 * 1672 212 39 16 chr1 7332489 7332876 -274860788 + L1MEc LINE L1 470 865 -5531 602 201 67 7 chr1 7332882 7333031 -274860633 + L1M4 LINE L1 4630 4787 -1359 * 2553 242 107 30 chr1 7333027 7333730 -274859934 - L1MEc LINE L1 -2907 3308 2660 2408 73 3 23 chr1 7333730 7334031 -274859633 - AluSp SINE Alu -18 295 1 2553 242 107 30 chr1 7334031 7334314 -274859350 - L1MEc LINE L1 -3555 2660 2400 1530 193 3 47 chr1 7334314 7334615 -274859049 - AluJo SINE Alu -24 288 1 2553 242 107 30 chr1 7334615 7334810 -274858854 - L1MEc LINE L1 -3815 2400 2089 2326 85 10 0 chr1 7334839 7335133 -274858531 + AluSx SINE Alu 1 297 -15 840 176 15 0 chr1 7335137 7335268 -274858396 - FLAM_C SINE Alu -10 133 1 230 355 0 50 chr1 7335313 7335454 -274858210 + MIR SINE MIR 19 152 -110 231 320 10 0 chr1 7336003 7336100 -274857564 + MIR SINE MIR 159 256 -6 301 229 0 36 chr1 7336454 7336537 -274857127 - MIR SINE MIR 0 262 183 1617 113 4 9 chr1 7337481 7337712 -274855952 + MER30 DNA MER1_type 1 230 0 300 250 64 58 chr1 7338211 7338367 -274855297 + L1MC4a LINE L1 5790 5946 -1862 700 239 49 22 chr1 7338553 7338737 -274854927 + MER3 DNA MER1_type 7 195 -14 284 350 107 0 chr1 7338749 7338946 -274854718 - L2 LINE L2 -1143 2171 1954 1216 206 164 62 chr1 7339063 7339639 -274854025 - L1MC4a LINE L1 0 7808 7159 2758 231 175 37 chr1 7339659 7340978 -274852686 - L1MD3 LINE L1 -747 6194 5972 282 150 0 0 chr1 7340978 7341018 -274852646 - 5S rRNA rRNA -79 42 3 272 222 56 0 chr1 7341023 7341095 -274852569 - L1MD3 LINE L1 -962 5979 5904 * 1191 241 104 14 chr1 7341083 7341374 -274852290 - L1MD3 LINE L1 -2884 4057 3711 2326 86 3 25 chr1 7341374 7341688 -274851976 - AluY SINE Alu -4 307 1 1191 241 104 14 chr1 7341688 7341836 -274851828 - L1MD3 LINE L1 -3230 3711 3578 1866 245 188 38 chr1 7341837 7342264 -274851400 - L1MD3 LINE L1 -3675 3266 2904 586 179 80 0 chr1 7342264 7342376 -274851288 - FLAM_A SINE Alu -12 121 1 1866 245 188 38 chr1 7342376 7343873 -274849791 - L1MD3 LINE L1 -4037 2904 994 308 304 73 16 chr1 7343914 7344105 -274849559 - L1MD3 LINE L1 -6210 213 12 2652 49 3 0 chr1 7344742 7345047 -274848617 - AluY SINE Alu -5 306 1 1220 218 26 95 chr1 7345585 7345975 -274847689 + MLT1A1 LTR MaLR 1 363 -2 206 283 0 0 chr1 7346625 7346671 -274846993 + (TTA)n Simple_repeat Simple_repeat 3 48 0 194 244 0 0 chr1 7349081 7349126 -274844538 - L2 LINE L2 -12 3260 3216 2448 100 0 0 chr1 7349132 7349441 -274844223 - AluSx SINE Alu -3 309 1 181 264 36 55 chr1 7349530 7349640 -274844024 - MIR SINE MIR -153 109 2 339 294 87 33 chr1 7349693 7349877 -274843787 - MIR SINE MIR -62 200 7 576 285 21 11 chr1 7350165 7350351 -274843313 + L2 LINE L2 3126 3313 0 233 160 0 20 chr1 7350527 7350577 -274843087 + (TATATG)n Simple_repeat Simple_repeat 2 50 0 1981 131 0 27 chr1 7350578 7350875 -274842789 - AluJo SINE Alu -12 300 12 312 333 76 8 chr1 7351269 7351401 -274842263 + L2 LINE L2 3171 3311 -2 2202 116 3 0 chr1 7352224 7352518 -274841146 + AluSx SINE Alu 1 295 -17 1819 159 3 10 chr1 7352692 7352993 -274840671 + AluJb SINE Alu 3 301 -11 250 249 135 21 chr1 7353070 7353263 -274840401 - L1ME4a LINE L1 -65 6056 5842 2147 118 3 0 chr1 7353796 7354085 -274839579 - AluSx SINE Alu -22 290 1 462 293 27 14 chr1 7354535 7354682 -274838982 + MER5A DNA MER1_type 18 166 -23 2292 109 0 7 chr1 7354827 7355130 -274838534 + AluSx SINE Alu 1 301 -11 25 0 0 0 chr1 7355427 7355452 -274838212 + AT_rich Low_complexity Low_complexity 1 25 0 23 0 0 0 chr1 7356025 7356048 -274837616 + AT_rich Low_complexity Low_complexity 1 23 0 1252 122 0 0 chr1 7356540 7356712 -274836952 - AluSg/x SINE Alu -5 307 136 2035 93 57 4 chr1 7356895 7357175 -274836489 + AluSx SINE Alu 2 296 -16 1826 156 3 29 chr1 7357324 7357632 -274836032 + AluJo SINE Alu 11 310 -2 2428 68 7 23 chr1 7357761 7358068 -274835596 - AluSq SINE Alu -10 303 2 340 308 121 26 chr1 7359660 7359730 -274833934 + L2 LINE L2 1225 1287 -2027 2465 87 0 3 chr1 7359730 7360039 -274833625 - AluSx SINE Alu -4 308 1 340 308 121 26 chr1 7360039 7360241 -274833423 + L2 LINE L2 1287 1523 -1791 720 282 115 27 chr1 7360244 7360574 -274833090 + L2 LINE L2 2187 2545 -769 310 29 0 0 chr1 7360574 7360609 -274833055 + U2 snRNA snRNA 1 35 -153 239 235 37 0 chr1 7360664 7360745 -274832919 + L2 LINE L2 2605 2688 -626 2158 123 13 0 chr1 7360777 7361077 -274832587 + AluSx SINE Alu 1 304 -8 1111 245 21 24 chr1 7361089 7361379 -274832285 + L1MC4 LINE L1 6703 6991 -1051 351 294 8 84 chr1 7361409 7361647 -274832017 + L1MC5 LINE L1 7709 7928 -33 653 270 101 50 chr1 7361716 7362160 -274831504 + L2 LINE L2 2837 3303 -10 251 233 0 22 chr1 7362455 7362545 -274831119 + (TATAA)n Simple_repeat Simple_repeat 3 90 0 23 33 0 0 chr1 7362714 7362744 -274830920 + AT_rich Low_complexity Low_complexity 1 30 0 2211 106 0 20 chr1 7362882 7363185 -274830479 - AluSc SINE Alu -12 297 1 2634 77 41 6 chr1 7364950 7365312 -274828352 + THE1C LTR MaLR 1 375 0 10315 112 39 9 chr1 7365312 7366846 -274826818 + THE1C-int LTR MaLR 1 1580 0 2655 91 19 16 chr1 7366846 7367220 -274826444 + THE1C LTR MaLR 1 375 0 200 360 47 0 chr1 7367334 7367420 -274826244 + L2 LINE L2 3178 3267 -5 537 184 43 43 chr1 7367676 7367781 -274825883 + L1MB2 LINE L1 6026 6133 -38 2425 116 11 27 chr1 7367781 7368151 -274825513 - THE1B LTR MaLR 0 364 1 537 184 43 43 chr1 7368151 7368186 -274825478 + L1MB2 LINE L1 6132 6166 -5 24 0 0 0 chr1 7368233 7368257 -274825407 + AT_rich Low_complexity Low_complexity 1 24 0 2149 116 3 16 chr1 7368467 7368770 -274824894 - AluSx SINE Alu -13 299 1 2491 45 3 0 chr1 7371130 7371417 -274822247 - AluY SINE Alu -23 288 1 210 248 0 40 chr1 7372973 7373074 -274820590 + (CCCG)n Simple_repeat Simple_repeat 4 100 0 22 80 0 0 chr1 7373105 7373155 -274820509 + GC_rich Low_complexity Low_complexity 1 50 0 23 0 0 0 chr1 7373247 7373270 -274820394 + GC_rich Low_complexity Low_complexity 1 23 0 437 250 33 33 chr1 7373559 7373739 -274819925 + G-rich Low_complexity Low_complexity 1 180 0 1711 161 28 14 chr1 7374067 7374358 -274819306 - AluSx SINE Alu -17 295 1 256 271 146 58 chr1 7374744 7375073 -274818591 - L2 LINE L2 -3 3310 2953 210 305 57 9 chr1 7375324 7375429 -274818235 - L2 LINE L2 -433 2881 2772 614 231 139 24 chr1 7378137 7378167 -274815497 - MIR SINE MIR -26 236 211 2543 71 0 0 chr1 7378167 7378478 -274815186 - AluY SINE Alu 0 311 1 614 231 139 24 chr1 7378478 7378509 -274815155 - MIR SINE MIR -51 211 185 189 0 0 0 chr1 7378509 7378530 -274815134 + (CAAA)n Simple_repeat Simple_repeat 3 23 0 614 231 139 24 chr1 7378530 7378675 -274814989 - MIR SINE MIR -77 185 5 1659 134 119 11 chr1 7378842 7379111 -274814553 - AluJo SINE Alu -14 298 1 2055 116 0 14 chr1 7380281 7380575 -274813089 + AluSx SINE Alu 1 290 -22 2715 201 42 8 chr1 7380676 7381289 -274812375 + L1MB5 LINE L1 3937 4570 -1576 4340 181 55 8 chr1 7381290 7381743 -274811921 + L1MB5 LINE L1 4721 5151 -1023 2213 110 3 3 chr1 7381743 7382053 -274811611 + AluSq SINE Alu 1 310 -3 4340 181 55 8 chr1 7382053 7382999 -274810665 + L1MB5 LINE L1 5151 6174 0 2260 102 3 3 chr1 7384480 7384785 -274808879 - AluSq SINE Alu -8 305 1 181 197 30 91 chr1 7384953 7385019 -274808645 + L2 LINE L2 3179 3240 -32 368 275 176 6 chr1 7385145 7385327 -274808337 - MIR SINE MIR -48 214 2 213 279 22 29 chr1 7386087 7386223 -274807441 + (CGGGG)n Simple_repeat Simple_repeat 4 138 0 23 0 0 0 chr1 7389416 7389439 -274804225 + AT_rich Low_complexity Low_complexity 1 23 0 207 0 0 0 chr1 7390316 7390339 -274803325 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 300 111 0 0 chr1 7390770 7390815 -274802849 + (TG)n Simple_repeat Simple_repeat 2 46 0 2485 57 3 3 chr1 7391346 7391646 -274802018 - AluY SINE Alu -11 300 1 2339 94 0 3 chr1 7392418 7392715 -274800949 - AluSx SINE Alu -16 296 1 24 0 0 0 chr1 7393166 7393190 -274800474 + AT_rich Low_complexity Low_complexity 1 24 0 512 331 97 6 chr1 7394189 7394364 -274799300 - MIR SINE MIR -55 207 17 1407 187 8 12 chr1 7395258 7395509 -274798155 - AluJo SINE Alu -48 264 15 813 145 17 0 chr1 7398217 7398360 -274795304 - AluJb SINE Alu 0 308 164 2600 46 0 0 chr1 7398436 7398738 -274794926 - AluY SINE Alu -9 302 1 1841 92 114 7 chr1 7399636 7399907 -274793757 - AluSg SINE Alu -10 300 1 1128 221 18 9 chr1 7399983 7400200 -274793464 + MER58A DNA MER1_type 6 224 0 22 56 0 0 chr1 7400458 7400494 -274793170 + AT_rich Low_complexity Low_complexity 1 36 0 1817 160 4 0 chr1 7400516 7400825 -274792839 - AluJo SINE Alu 0 310 1 2441 91 0 3 chr1 7402039 7402348 -274791316 - AluSx SINE Alu -4 308 1 1705 102 16 20 chr1 7405445 7405689 -274787975 + MER75B DNA T2_type 1 243 0 327 284 89 0 chr1 7408374 7408509 -274785155 + MIR SINE MIR 101 251 -11 535 205 116 9 chr1 7408996 7409108 -274784556 - FLAM_A SINE Alu -9 124 1 315 0 0 0 chr1 7409118 7409153 -274784511 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 2363 88 3 0 chr1 7409180 7409485 -274784179 + AluSx SINE Alu 1 306 -6 2199 112 3 10 chr1 7410455 7410758 -274782906 + AluSx SINE Alu 1 301 -11 805 196 0 0 chr1 7410967 7411105 -274782559 + L1MB4 LINE L1 6036 6173 -7 2312 97 3 3 chr1 7411849 7412148 -274781516 - AluSx SINE Alu -13 299 1 219 229 0 49 chr1 7412565 7412626 -274781038 - L3 LINE CR1 -3 1574 1517 2357 102 0 0 chr1 7412960 7413263 -274780401 + AluSx SINE Alu 1 303 -9 2580 64 0 3 chr1 7413265 7413577 -274780087 + AluY SINE Alu 1 311 0 1031 269 70 18 chr1 7413727 7414077 -274779587 + L1MB8 LINE L1 5808 6177 -1 240 132 0 0 chr1 7414104 7414142 -274779522 + L1MB7 LINE L1 6138 6175 -9 25 31 0 0 chr1 7414205 7414237 -274779427 + AT_rich Low_complexity Low_complexity 1 32 0 1713 136 0 79 chr1 7414238 7414554 -274779110 + AluSx SINE Alu 1 291 -21 206 164 15 45 chr1 7414968 7415035 -274778629 + (TA)n Simple_repeat Simple_repeat 2 66 0 205 216 0 0 chr1 7415242 7415279 -274778385 + (TA)n Simple_repeat Simple_repeat 1 37 0 202 270 0 34 chr1 7415299 7415388 -274778276 + T-rich Low_complexity Low_complexity 5 90 0 25 0 0 0 chr1 7415422 7415447 -274778217 + AT_rich Low_complexity Low_complexity 1 25 0 672 112 0 0 chr1 7415456 7415539 -274778125 + AluY SINE Alu 2 85 -221 1676 113 0 17 chr1 7415539 7415779 -274777885 - AluSq SINE Alu -77 236 1 2467 55 3 0 chr1 7415817 7416110 -274777554 - AluY SINE Alu -17 294 1 337 172 0 0 chr1 7416643 7416701 -274776963 - Charlie5 DNA MER1_type -2504 108 51 914 245 46 9 chr1 7416986 7417202 -274776462 + MER58A DNA MER1_type 1 224 0 620 76 0 0 chr1 7417261 7417340 -274776324 + THE1B LTR MaLR 1 79 -285 617 89 0 0 chr1 7417359 7417438 -274776226 + THE1B LTR MaLR 1 79 -285 592 65 26 0 chr1 7417457 7417534 -274776130 + THE1B LTR MaLR 1 79 -285 2351 119 39 33 chr1 7417553 7417914 -274775750 + THE1B LTR MaLR 1 363 -1 866 131 46 0 chr1 7421187 7421317 -274772347 + AluJb SINE Alu 1 136 -176 1958 136 7 16 chr1 7421317 7421627 -274772037 + AluJb SINE Alu 1 307 -5 840 120 0 0 chr1 7421919 7422036 -274771628 - AluSx SINE Alu -2 307 191 935 118 15 0 chr1 7422040 7422176 -274771488 - AluSx SINE Alu -174 138 1 2192 104 7 0 chr1 7423145 7423442 -274770222 + AluSx SINE Alu 1 299 -13 1915 159 0 25 chr1 7424166 7424480 -274769184 - AluJb SINE Alu -6 306 1 22 35 0 0 chr1 7425287 7425316 -274768348 + AT_rich Low_complexity Low_complexity 1 29 0 1533 158 68 32 chr1 7425510 7425788 -274767876 - AluJb SINE Alu -24 288 1 2247 126 0 0 chr1 7425791 7426100 -274767564 - AluSg SINE Alu -1 309 1 258 130 14 29 chr1 7426393 7426462 -274767202 + (TA)n Simple_repeat Simple_repeat 2 69 0 189 0 0 0 chr1 7426462 7426483 -274767181 + (GA)n Simple_repeat Simple_repeat 2 22 0 2119 108 3 11 chr1 7426490 7426777 -274766887 - AluSx SINE Alu -27 285 1 216 266 123 39 chr1 7426999 7427153 -274766511 - L2 LINE L2 -360 2954 2788 * 470 218 135 53 chr1 7427118 7427288 -274766376 + MIR SINE MIR 35 218 -44 618 262 14 7 chr1 7427564 7427709 -274765955 - MIR SINE MIR -10 252 107 2175 113 13 10 chr1 7427976 7428277 -274765387 + AluSx SINE Alu 1 302 -10 255 182 141 81 chr1 7429803 7429902 -274763762 - L2 LINE L2 0 3313 3209 2679 47 0 0 chr1 7429970 7430270 -274763394 + AluY SINE Alu 1 300 -11 705 177 152 0 chr1 7431564 7431728 -274761936 - MER5A DNA MER1_type 0 189 1 472 208 82 19 chr1 7432374 7432549 -274761115 + MIR SINE MIR 13 202 -57 2310 73 45 0 chr1 7432554 7432841 -274760823 - AluY SINE Alu -11 300 1 3026 202 142 94 chr1 7432932 7433273 -274760391 - L1MC3 LINE L1 -3 7782 7459 2191 107 3 27 chr1 7433273 7433572 -274760092 + AluSx SINE Alu 1 292 -20 3026 202 142 94 chr1 7433572 7433812 -274759852 - L1MC3 LINE L1 -326 7459 7232 308 286 24 0 chr1 7433812 7433896 -274759768 - MLT1F1 LTR MaLR -447 120 35 3026 202 142 94 chr1 7433896 7434454 -274759210 - L1MC3 LINE L1 -553 7232 6500 757 139 0 31 chr1 7434461 7434590 -274759074 - FLAM_C SINE Alu -7 126 2 1018 102 0 0 chr1 7435480 7435607 -274758057 + AluSq/x SINE Alu 3 129 -183 387 119 0 0 chr1 7435607 7435666 -274757998 + Alu SINE Alu 242 300 0 542 293 129 0 chr1 7435934 7436159 -274757505 - MIR SINE MIR 0 262 9 236 173 269 0 chr1 7436250 7436302 -274757362 + L2 LINE L2 3191 3256 -57 2275 121 3 0 chr1 7436716 7437022 -274756642 + AluSx SINE Alu 6 312 0 2058 125 3 3 chr1 7438548 7438837 -274754827 + AluSx SINE Alu 14 302 -10 194 216 0 0 chr1 7439109 7439146 -274754518 - L2 LINE L2 -4 3309 3273 206 284 15 15 chr1 7439185 7439252 -274754412 - L2 LINE L2 -20 3252 3186 407 319 0 9 chr1 7439351 7439467 -274754197 + L2 LINE L2 3156 3270 -2 1962 133 66 3 chr1 7439642 7439928 -274753736 - AluJb SINE Alu -8 304 1 429 227 36 0 chr1 7439933 7440043 -274753621 - L1MA8 LINE L1 -1 6290 6177 2697 207 16 0 chr1 7440099 7440644 -274753020 - L1MA8 LINE L1 -118 6173 5620 2065 119 14 14 chr1 7441411 7441704 -274751960 + AluSx SINE Alu 1 293 -19 2389 120 8 6 chr1 7443168 7443526 -274750138 + THE1B LTR MaLR 1 359 -5 1782 181 7 0 chr1 7443614 7443906 -274749758 + AluJb SINE Alu 1 294 -18 1586 166 61 32 chr1 7444859 7445203 -274748461 + MLT1A1 LTR MaLR 1 354 -11 730 274 106 64 chr1 7445218 7445606 -274748058 + MLT1K LTR MaLR 4 415 -61 2025 144 0 10 chr1 7445606 7445904 -274747760 - AluJo SINE Alu -5 307 13 730 274 106 64 chr1 7445904 7445967 -274747697 + MLT1K LTR MaLR 415 474 -2 495 199 130 15 chr1 7446256 7446387 -274747277 + MER112 DNA MER1_type 2 147 -113 201 343 57 0 chr1 7446447 7446517 -274747147 - MIR SINE MIR -86 122 49 959 172 12 18 chr1 7447722 7447882 -274745782 - AluJo/FRAM SINE Alu -16 296 136 2087 156 0 0 chr1 7447882 7448183 -274745481 - AluJb SINE Alu -11 301 1 1973 122 4 4 chr1 7448571 7448842 -274744822 + AluJb SINE Alu 17 287 -25 2383 93 3 0 chr1 7449048 7449348 -274744316 + AluSg SINE Alu 1 301 -9 44 46 0 0 chr1 7450658 7450723 -274742941 + GC_rich Low_complexity Low_complexity 1 65 0 1223 173 90 61 chr1 7451919 7452110 -274741554 - AluJb SINE Alu -9 303 99 1983 128 29 0 chr1 7452110 7452404 -274741260 + AluSq SINE Alu 1 302 0 1223 173 90 61 chr1 7452404 7452489 -274741175 - AluJb SINE Alu -213 99 18 474 204 62 0 chr1 7452489 7452602 -274741062 + MIR SINE MIR 45 164 -98 321 153 176 0 chr1 7452918 7453049 -274740615 - AluSg/x SINE Alu 0 302 149 205 226 0 65 chr1 7453179 7453241 -274740423 + L2 LINE L2 3207 3264 -8 198 0 0 0 chr1 7453436 7453458 -274740206 + (TTTG)n Simple_repeat Simple_repeat 2 23 0 2051 131 13 29 chr1 7454070 7454376 -274739288 + AluJb SINE Alu 1 301 -11 268 372 0 0 chr1 7454553 7454639 -274739025 - MIR SINE MIR -121 141 56 489 184 0 0 chr1 7454746 7454833 -274738831 - AluJb SINE Alu -16 296 210 936 230 107 47 chr1 7454938 7455320 -274738344 + MLT1I LTR MaLR 3 407 -2 620 210 52 19 chr1 7455477 7456614 -274737050 + L1MB8 LINE L1 4864 6173 -11 307 176 92 114 chr1 7457186 7457317 -274736347 + MIR3 SINE MIR 30 157 -51 1423 130 18 0 chr1 7457322 7457545 -274736119 - MER30 DNA MER1_type 0 230 4 250 296 23 23 chr1 7457763 7457851 -274735813 + MLT1H LTR MaLR 454 541 -8 322 273 117 31 chr1 7458261 7458389 -274735275 + MIR SINE MIR 9 147 -115 23 0 0 0 chr1 7459206 7459229 -274734435 + AT_rich Low_complexity Low_complexity 1 23 0 2217 113 7 3 chr1 7459231 7459540 -274734124 + AluSg SINE Alu 1 310 0 328 188 0 31 chr1 7461642 7461706 -274731958 + MER77 LTR ERV1 54 115 -490 1504 217 84 13 chr1 7461886 7462278 -274731386 + MER77 LTR ERV1 179 598 -7 2028 131 50 34 chr1 7462348 7462706 -274730958 + THE1B LTR MaLR 1 364 0 216 149 0 0 chr1 7463227 7463274 -274730390 + (TTCA)n Simple_repeat Simple_repeat 1 47 0 377 85 0 17 chr1 7463769 7463828 -274729836 + (TCCC)n Simple_repeat Simple_repeat 1 58 0 214 274 116 0 chr1 7463828 7463923 -274729741 - L2 LINE L2 -9 3263 3158 189 74 0 0 chr1 7464006 7464033 -274729631 + (TC)n Simple_repeat Simple_repeat 2 28 0 476 325 160 23 chr1 7464242 7464842 -274728822 + L2 LINE L2 2585 3270 -2 192 275 50 12 chr1 7464926 7465006 -274728658 + MIR SINE MIR 6 88 -174 2326 87 0 17 chr1 7465595 7465893 -274727771 - AluSq SINE Alu -16 297 5 215 308 165 0 chr1 7465975 7466108 -274727556 + MIR3 SINE MIR 3 157 -51 2203 110 7 17 chr1 7466180 7466481 -274727183 - AluJb SINE Alu -14 298 1 2223 116 0 16 chr1 7466490 7466793 -274726871 - AluSq SINE Alu -15 298 1 2295 109 20 0 chr1 7467630 7467934 -274725730 + AluSx SINE Alu 1 310 -2 180 319 96 0 chr1 7468489 7468583 -274725081 + L2 LINE L2 2874 2976 -338 1111 332 97 23 chr1 7468596 7469828 -274723836 + L2 LINE L2 1965 3297 -16 902 235 79 59 chr1 7471187 7471579 -274722085 + MLT1C LTR MaLR 59 458 -9 2461 64 0 35 chr1 7472743 7473056 -274720608 - AluY SINE Alu -9 302 1 265 240 170 10 chr1 7474684 7474784 -274718880 - L2 LINE L2 -3 3269 3154 198 0 0 0 chr1 7475062 7475084 -274718580 + (CTG)n Simple_repeat Simple_repeat 1 22 0 22 0 0 0 chr1 7475406 7475428 -274718236 + GC_rich Low_complexity Low_complexity 1 22 0 242 277 213 0 chr1 7478958 7479052 -274714612 + L2 LINE L2 3198 3311 -2 319 258 205 7 chr1 7480183 7480334 -274713330 + L2 LINE L2 2449 2629 -685 666 302 67 57 chr1 7480504 7481167 -274712497 + L2 LINE L2 2624 3309 -4 2101 112 18 0 chr1 7481194 7481510 -274712154 - AluSx SINE Alu 0 312 1 194 248 66 109 chr1 7482066 7482203 -274711461 + L2 LINE L2 3142 3272 0 258 220 64 37 chr1 7482664 7482773 -274710891 - MIR SINE MIR -67 141 30 2135 126 7 0 chr1 7483290 7483591 -274710073 + AluSx SINE Alu 5 307 -5 336 307 60 13 chr1 7484047 7484197 -274709467 - L2 LINE L2 0 3272 3116 291 159 76 53 chr1 7484442 7484574 -274709090 + LTR33 LTR ERVL 22 156 -365 296 218 0 0 chr1 7484838 7484893 -274708771 - MIR SINE MIR -68 140 86 256 259 83 19 chr1 7486814 7486922 -274706742 + MIR SINE MIR 16 130 -78 422 18 18 0 chr1 7487563 7487618 -274706046 + (TG)n Simple_repeat Simple_repeat 2 57 0 198 329 98 18 chr1 7487745 7487909 -274705755 - MIR3 SINE MIR -6 202 26 207 148 0 74 chr1 7488546 7488600 -274705064 - MIR3 SINE MIR -49 159 110 2052 123 0 0 chr1 7488818 7489134 -274704530 + AluSq SINE Alu 1 316 0 2469 82 7 3 chr1 7489815 7490121 -274703543 - AluSq SINE Alu -6 307 1 1678 200 0 3 chr1 7490275 7490575 -274703089 - AluJb SINE Alu -13 299 1 200 214 18 0 chr1 7492669 7492725 -274700939 + (CA)n Simple_repeat Simple_repeat 2 58 0 2063 131 6 10 chr1 7493996 7494308 -274699356 - AluSx SINE Alu -1 311 1 2305 116 7 0 chr1 7494338 7494648 -274699016 - AluSx SINE Alu 0 312 1 1764 164 0 50 chr1 7494651 7494969 -274698695 - AluJo SINE Alu -10 302 1 1431 93 0 6 chr1 7495067 7495250 -274698414 - AluSx SINE Alu -11 301 120 1971 91 4 0 chr1 7495250 7495502 -274698162 - AluSq SINE Alu -1 312 60 278 146 427 0 chr1 7495851 7495933 -274697731 - Charlie1 DNA MER1_type -3 2758 2642 1964 114 10 40 chr1 7495937 7496236 -274697428 - AluSx SINE Alu -22 290 1 953 146 0 0 chr1 7496236 7496366 -274697298 - AluSx SINE Alu -178 135 6 311 65 0 0 chr1 7496372 7496418 -274697246 + MADE1 DNA Mariner 35 80 0 1593 159 31 31 chr1 7496523 7496813 -274696851 - AluJo SINE Alu -22 290 1 192 152 0 0 chr1 7496985 7497018 -274696646 + (TTCA)n Simple_repeat Simple_repeat 2 34 0 2417 60 0 0 chr1 7497030 7497342 -274696322 - AluSq SINE Alu 0 312 1 1719 193 0 13 chr1 7498783 7499084 -274694580 - AluJo SINE Alu -15 297 1 2322 92 3 0 chr1 7499115 7499408 -274694256 + AluSg SINE Alu 1 294 -16 254 312 72 8 chr1 7499748 7499873 -274693791 + L1MC/D LINE L1 5727 5859 -1949 2063 156 0 10 chr1 7500176 7500490 -274693174 + AluSx SINE Alu 1 311 -1 2228 125 16 0 chr1 7500659 7500964 -274692700 - AluSg SINE Alu 0 310 1 1719 188 0 7 chr1 7501063 7501355 -274692309 - AluJo SINE Alu -22 290 1 4382 111 33 6 chr1 7501504 7502195 -274691469 + L1MA5A LINE L1 5587 6296 -1 1726 143 19 76 chr1 7502262 7502576 -274691088 - AluJo SINE Alu -16 296 1 945 198 48 0 chr1 7503003 7503190 -274690474 + AluJb SINE Alu 113 308 -4 277 260 0 0 chr1 7503286 7503359 -274690305 + (CCCA)n Simple_repeat Simple_repeat 3 75 0 184 312 117 0 chr1 7503359 7503436 -274690228 - L2 LINE L2 -19 3294 3209 983 176 0 0 chr1 7503750 7503898 -274689766 - FRAM SINE Alu -30 146 1 326 267 43 26 chr1 7504016 7504132 -274689532 - MER94 DNA DNA -16 118 1 431 332 98 4 chr1 7504190 7504467 -274689197 + L1MC/D LINE L1 5409 5711 -2097 734 233 158 0 chr1 7504578 7504780 -274688884 + MIR SINE MIR 8 241 -21 2238 106 7 3 chr1 7504879 7505171 -274688493 + AluSg1 SINE Alu 1 293 -16 2008 128 30 3 chr1 7505316 7505620 -274688044 + AluSx SINE Alu 1 312 0 1711 164 39 4 chr1 7505634 7505915 -274687749 + AluJb SINE Alu 7 297 -15 21 0 0 0 chr1 7506231 7506252 -274687412 + AT_rich Low_complexity Low_complexity 1 21 0 180 213 75 150 chr1 7507784 7507864 -274685800 + L2 LINE L2 3222 3295 -18 1120 171 25 25 chr1 7507906 7508145 -274685519 - L1MA4 LINE L1 -8 6292 6054 711 83 148 0 chr1 7508145 7508253 -274685411 + MER84 LTR ERVI 1 124 -383 823 70 0 0 chr1 7508253 7508368 -274685296 - MER84-int LTR ERV1 -3598 1356 1242 1172 71 88 6 chr1 7508368 7508538 -274685126 + MER84 LTR ERVI 324 507 0 3527 139 83 27 chr1 7508547 7508910 -274684754 - L1MA4 LINE L1 -257 6043 5702 2142 141 3 0 chr1 7508910 7509215 -274684449 - AluSx SINE Alu -6 306 1 3527 139 83 27 chr1 7509215 7509802 -274683862 - L1MA4 LINE L1 -598 5702 5044 2228 117 7 0 chr1 7509802 7510111 -274683553 - AluSx SINE Alu -1 311 1 2414 115 0 0 chr1 7510138 7510450 -274683214 - AluSx SINE Alu 0 312 1 230 238 181 29 chr1 7512045 7512150 -274681514 + L2 LINE L2 3190 3310 -3 2008 148 3 3 chr1 7513031 7513336 -274680328 + AluJb SINE Alu 1 305 -7 576 298 137 24 chr1 7513515 7513807 -274679857 + L2 LINE L2 2989 3313 0 270 317 36 3 chr1 7513819 7513942 -274679722 + MIR SINE MIR 6 140 -68 412 211 128 51 chr1 7514071 7514227 -274679437 + MIR SINE MIR 95 262 0 824 249 86 20 chr1 7514710 7514955 -274678709 + MIR SINE MIR 2 262 0 2242 102 31 0 chr1 7515765 7516058 -274677606 + AluSp SINE Alu 1 302 -11 192 40 0 0 chr1 7516062 7516087 -274677577 + (TTTG)n Simple_repeat Simple_repeat 2 26 0 274 306 174 15 chr1 7517597 7517793 -274675871 - L2 LINE L2 -898 2416 2190 27 0 0 0 chr1 7518218 7518245 -274675419 + GC_rich Low_complexity Low_complexity 1 27 0 411 188 188 62 chr1 7519537 7519665 -274673999 - L2 LINE L2 -2 3270 3127 363 309 216 10 chr1 7525530 7525724 -274667940 + MIR SINE MIR 17 250 -12 340 309 147 16 chr1 7526134 7526325 -274667339 - L2 LINE L2 -550 2764 2549 2073 100 0 45 chr1 7526982 7527291 -274666373 - AluSp SINE Alu -18 295 1 197 255 0 21 chr1 7527317 7527364 -274666300 + MIR SINE MIR 101 146 -62 2155 122 17 0 chr1 7527504 7527800 -274665864 - AluSx SINE Alu -11 301 1 1271 170 38 88 chr1 7527807 7528125 -274665539 - LTR9 LTR ERV1 -310 302 1 589 206 112 93 chr1 7528137 7528544 -274665120 + LTR48 LTR ERV1 173 787 0 1965 97 7 71 chr1 7528677 7529000 -274664664 + AluSx SINE Alu 1 280 -32 2042 111 0 28 chr1 7529359 7529678 -274663986 - AluSx SINE Alu 0 311 1 595 182 10 0 chr1 7529678 7529777 -274663887 - FLAM_A SINE Alu -8 134 35 436 141 33 11 chr1 7529786 7529878 -274663786 - AluSc SINE Alu -14 295 202 232 139 0 0 chr1 7629878 7629914 -274563750 - FLAM_A SINE Alu -96 36 1 319 79 0 111 chr1 7629914 7629977 -274563687 + L1MA8 LINE L1 6125 6180 -111 2323 91 0 0 chr1 7629990 7630276 -274563388 + AluY SINE Alu 1 286 -25 233 294 12 24 chr1 7630416 7630501 -274563163 - MLT1K LTR MaLR -494 94 11 2309 98 0 0 chr1 7630508 7630805 -274562859 + AluSx SINE Alu 1 297 -15 963 94 16 0 chr1 7630961 7631088 -274562576 - FRAM SINE Alu -30 146 18 1587 176 39 33 chr1 7631231 7631538 -274562126 + AluJb SINE Alu 1 309 -3 1273 157 0 32 chr1 7631553 7631770 -274561894 + AluJo SINE Alu 1 210 -102 1429 84 0 31 chr1 7631786 7631977 -274561687 - AluSq SINE Alu -52 261 77 889 143 27 27 chr1 7631979 7632126 -274561538 + AluJo/FRAM SINE Alu 156 302 -10 793 117 14 34 chr1 7632179 7632619 -274561045 + (TG)n Simple_repeat Simple_repeat 1 431 0 967 76 45 7 chr1 7632637 7633269 -274560395 + (TG)n Simple_repeat Simple_repeat 1 831 0 739 208 79 82 chr1 7633269 7633727 -274559937 - MLT2B1 LTR ERVL -40 449 1 739 293 18 71 chr1 7633797 7634094 -274559570 - ERVL LTR ERVL -2577 3187 2913 2501 78 0 0 chr1 7634094 7634403 -274559261 + AluSg SINE Alu 1 309 -1 739 293 18 71 chr1 7634403 7634487 -274559177 - ERVL LTR ERVL -2851 2913 2826 2514 58 0 0 chr1 7634611 7634904 -274558760 + AluY SINE Alu 1 293 -18 1854 148 11 0 chr1 7634903 7635181 -274558483 - AluJb SINE Alu -31 281 1 * 1521 155 0 0 chr1 7636227 7636453 -274557211 - AluJb SINE Alu -9 303 78 1904 112 94 0 chr1 7637065 7637342 -274556322 + AluSx SINE Alu 1 303 -9 304 181 24 0 chr1 7637441 7637524 -274556140 + (TA)n Simple_repeat Simple_repeat 2 86 0 303 28 0 0 chr1 7637575 7637611 -274556053 + (CA)n Simple_repeat Simple_repeat 2 37 0 938 159 62 46 chr1 7637620 7637918 -274555746 + MER21A LTR ERV1 34 356 -507 2139 103 0 0 chr1 7637942 7638215 -274555449 + AluSx SINE Alu 25 297 -15 1836 146 25 0 chr1 7638268 7638542 -274555122 - AluJb SINE Alu -31 281 1 2522 86 0 0 chr1 7639548 7639861 -274553803 + AluSq SINE Alu 1 313 0 295 308 75 51 chr1 7639870 7640084 -274553580 - L2 LINE L2 -530 2784 2566 1787 147 40 3 chr1 7640652 7640952 -274552712 + AluJb SINE Alu 1 311 -1 2511 70 0 3 chr1 7641417 7641718 -274551946 + AluSp SINE Alu 1 300 -13 1204 113 24 0 chr1 7641718 7641886 -274551778 + AluSp SINE Alu 134 305 -8 2709 94 13 8 chr1 7642039 7642412 -274551252 + THE1C LTR MaLR 1 375 0 3631 109 73 23 chr1 7642755 7642785 -274550879 + LTR24C LTR ERV1 1 28 -607 828 99 7 92 chr1 7642785 7642926 -274550738 + FLAM_C SINE Alu 5 133 0 3631 109 73 23 chr1 7642926 7643498 -274550166 + LTR24C LTR ERV1 28 633 -2 2290 103 0 3 chr1 7643572 7643874 -274549790 + AluSq SINE Alu 1 301 -12 385 136 61 0 chr1 7644022 7644088 -274549576 - Charlie4 DNA MER1_type -5 1956 1887 2106 103 17 3 chr1 7644095 7644386 -274549278 + AluSc SINE Alu 1 295 -14 1042 84 15 0 chr1 7644386 7644517 -274549147 + AluSq/x SINE Alu 1 133 -180 1869 126 27 33 chr1 7644632 7644933 -274548731 - AluSx SINE Alu -13 299 1 1978 135 17 7 chr1 7644962 7645258 -274548406 + AluY SINE Alu 1 299 -12 780 68 0 0 chr1 7645717 7645820 -274547844 + (TTCC)n Simple_repeat Simple_repeat 3 105 0 484 173 0 17 chr1 7646017 7646116 -274547548 - L1MC4 LINE L1 0 8042 7848 207 319 87 0 chr1 7646188 7646257 -274547407 + MIR SINE MIR 71 145 -63 1094 168 84 26 chr1 7646427 7646653 -274547011 - AluJb SINE Alu -2 310 72 205 350 150 0 chr1 7647384 7647484 -274546180 + L2 LINE L2 3123 3237 -35 186 43 0 0 chr1 7647857 7647880 -274545784 + (T)n Simple_repeat Simple_repeat 1 23 0 2317 95 0 10 chr1 7647980 7648284 -274545380 - AluSc SINE Alu -6 303 3 483 33 0 0 chr1 7648597 7648658 -274545006 + (TG)n Simple_repeat Simple_repeat 2 62 0 414 0 0 0 chr1 7648722 7648768 -274544896 + (TG)n Simple_repeat Simple_repeat 1 46 0 2130 127 7 0 chr1 7649077 7649377 -274544287 + AluSx SINE Alu 1 302 -10 2266 64 0 0 chr1 7649378 7649645 -274544019 + AluY SINE Alu 38 304 -7 2030 154 28 11 chr1 7650092 7650448 -274543216 - THE1B LTR MaLR 0 364 3 1925 156 0 13 chr1 7653005 7653306 -274540358 + AluJb SINE Alu 1 297 -15 1420 221 7 29 chr1 7653585 7653893 -274539771 + AluJo SINE Alu 1 301 -1 445 168 262 54 chr1 7654198 7654347 -274539317 - MER58B DNA MER1_type 0 341 162 284 134 34 84 chr1 7654836 7654955 -274538709 + A-rich Low_complexity Low_complexity 4 116 0 1892 143 10 13 chr1 7655221 7655521 -274538143 - AluJo SINE Alu -13 299 1 21 0 0 0 chr1 7655721 7655742 -274537922 + AT_rich Low_complexity Low_complexity 1 21 0 403 272 7 51 chr1 7656136 7656293 -274537371 + MIR SINE MIR 49 197 -65 388 239 111 0 chr1 7656581 7656698 -274536966 + MER5C DNA MER1_type 1 130 -194 2703 100 0 14 chr1 7656765 7657134 -274536530 - THE1B LTR MaLR 0 364 1 274 161 32 48 chr1 7657233 7657295 -274536369 - MLT1J LTR MaLR -450 61 1 721 189 0 0 chr1 7657670 7657792 -274535872 - FLAM_C SINE Alu -16 127 6 1829 151 0 20 chr1 7657825 7658130 -274535534 + AluJb SINE Alu 1 299 -13 183 80 0 0 chr1 7658943 7658968 -274534696 + (TTTTC)n Simple_repeat Simple_repeat 2 26 0 1974 220 53 19 chr1 7660256 7660729 -274532935 - LTR42 LTR ERVL 0 495 7 211 262 213 16 chr1 7660735 7660857 -274532807 + L2 LINE L2 3168 3313 0 2050 137 3 3 chr1 7660940 7661239 -274532425 - AluSx SINE Alu -13 299 1 2150 134 0 0 chr1 7661249 7661555 -274532109 - AluSx SINE Alu -6 306 1 455 217 25 17 chr1 7662270 7662390 -274531274 + L2 LINE L2 3193 3313 0 336 275 75 8 chr1 7663080 7663200 -274530464 - MIR SINE MIR -112 150 23 318 218 137 48 chr1 7663905 7664029 -274529635 - L1ME3A LINE L1 0 6170 6036 2116 247 96 50 chr1 7664168 7665191 -274528473 - L1MC5 LINE L1 -431 7530 6476 2009 128 10 7 chr1 7665232 7665529 -274528135 - AluSx SINE Alu -12 300 3 1520 181 40 14 chr1 7665845 7666121 -274527543 - AluJo SINE Alu -27 285 3 42 20 0 0 chr1 7666679 7666728 -274526936 + AT_rich Low_complexity Low_complexity 1 49 0 1221 117 6 0 chr1 7667657 7667828 -274525836 - AluSq SINE Alu -12 301 130 961 162 56 178 chr1 7667862 7668183 -274525481 + AluJo SINE Alu 1 282 -30 21 36 0 0 chr1 7668183 7668211 -274525453 + AT_rich Low_complexity Low_complexity 1 28 0 23 0 0 0 chr1 7668436 7668459 -274525205 + AT_rich Low_complexity Low_complexity 1 23 0 1120 213 138 27 chr1 7668657 7669368 -274524296 + L1ME1 LINE L1 4826 5621 -543 1370 141 89 56 chr1 7669405 7669674 -274523990 + AluJb SINE Alu 11 288 -24 319 189 0 40 chr1 7669698 7669772 -274523892 + L1ME2 LINE L1 5978 6048 -116 2088 122 7 7 chr1 7670372 7670675 -274522989 - AluSx SINE Alu -9 303 1 2018 126 14 0 chr1 7672290 7672584 -274521080 - AluSx SINE Alu -14 298 1 23 33 0 0 chr1 7673160 7673190 -274520474 + AT_rich Low_complexity Low_complexity 1 30 0 2349 63 23 3 chr1 7673206 7673508 -274520156 - AluY SINE Alu -2 309 2 522 308 100 21 chr1 7673510 7673750 -274519914 - L1MC5 LINE L1 -2147 5661 5403 1207 249 84 40 chr1 7674171 7674708 -274518956 - L1MC4 LINE L1 -113 7695 7244 1383 158 83 18 chr1 7674708 7674834 -274518830 + AluJo SINE Alu 5 121 -191 252 0 0 0 chr1 7674834 7674862 -274518802 + (TA)n Simple_repeat Simple_repeat 2 29 0 1383 158 83 18 chr1 7674862 7675013 -274518651 + AluJo SINE Alu 121 300 -12 1207 249 84 40 chr1 7675013 7675097 -274518567 - L1MC4 LINE L1 -564 7244 7165 476 235 95 40 chr1 7675105 7675305 -274518359 - L1MC4 LINE L1 -958 7084 6874 877 259 114 21 chr1 7675469 7675801 -274517863 - L1ME3A LINE L1 -10 6160 5798 2146 55 0 12 chr1 7675801 7676056 -274517608 + AluY SINE Alu 52 303 -8 775 257 32 48 chr1 7676056 7676291 -274517373 + L1M4 LINE L1 2722 2952 -3194 1992 132 14 0 chr1 7676291 7676580 -274517084 + AluJb SINE Alu 1 293 -19 775 257 32 48 chr1 7676580 7676659 -274517005 + L1M4 LINE L1 2952 3031 -3115 422 358 59 4 chr1 7676775 7677029 -274516635 + L1ME1 LINE L1 5680 5947 -223 485 242 17 50 chr1 7677662 7677782 -274515882 + L2 LINE L2 3182 3297 -16 560 146 62 31 chr1 7678145 7678275 -274515389 + L1ME1 LINE L1 6027 6160 -6 1367 170 77 64 chr1 7679698 7680037 -274513627 + Charlie1b DNA MER1_type 57 405 -2356 2357 86 16 0 chr1 7680037 7680340 -274513324 - AluSc SINE Alu -1 308 1 1367 170 77 64 chr1 7680340 7680454 -274513210 + Charlie1b DNA MER1_type 405 516 -7 1715 209 0 0 chr1 7680491 7680787 -274512877 - AluJo SINE Alu -16 296 1 198 296 136 0 chr1 7681348 7681473 -274512191 - L3 LINE CR1 -710 867 726 325 96 19 180 chr1 7681479 7681636 -274512028 - MLT2B3 LTR ERVL 0 554 393 1284 196 151 16 chr1 7681636 7682013 -274511651 - MSTC LTR MaLR 0 428 1 * 2228 197 23 7 chr1 7682013 7682447 -274511217 - MLT2B3 LTR ERVL -107 447 7 190 235 0 39 chr1 7682577 7682628 -274511036 - MIR3 SINE MIR -32 176 128 2192 105 3 0 chr1 7683309 7683605 -274510059 + AluY SINE Alu 1 297 -14 2362 98 0 0 chr1 7683753 7684058 -274509606 - AluSg1 SINE Alu -4 305 1 2206 99 0 13 chr1 7684667 7684971 -274508693 - AluSq SINE Alu -11 302 3 2529 181 87 12 chr1 7685056 7685526 -274508138 - L1MA7 LINE L1 0 6291 5759 543 69 0 0 chr1 7685526 7685598 -274508066 + (CA)n Simple_repeat Simple_repeat 2 73 0 2529 181 87 12 chr1 7685598 7685769 -274507895 - L1MA7 LINE L1 -532 5759 5602 452 162 253 0 chr1 7685872 7685971 -274507693 + Tigger4(Zombi) DNA MER2_type 1 124 -2607 1242 114 5 5 chr1 7685974 7686175 -274507489 + Tigger4(Zombi) DNA MER2_type 2531 2731 0 1027 157 67 17 chr1 7687713 7687920 -274505744 + AluJo SINE Alu 96 311 0 740 188 91 23 chr1 7688314 7688490 -274505174 - MIR SINE MIR -54 208 21 323 324 153 0 chr1 7689701 7689877 -274503787 - MIR SINE MIR -6 256 54 1106 171 23 14 chr1 7690008 7690224 -274503440 + MER20 DNA MER1_type 1 218 -1 372 107 18 0 chr1 7690426 7690482 -274503182 - MER34C LTR ERV1 -492 93 37 1463 87 0 0 chr1 7691093 7691278 -274502386 - AluSp SINE Alu -6 307 123 2185 114 3 13 chr1 7691299 7691614 -274502050 + AluSx SINE Alu 1 312 0 290 305 28 21 chr1 7693148 7693289 -274500375 - MIR3 SINE MIR -53 155 14 205 205 0 0 chr1 7693329 7693368 -274500296 + T-rich Low_complexity Low_complexity 1 39 0 336 193 0 0 chr1 7694247 7694304 -274499360 + AluJ/FLAM SINE Alu 1 57 -245 274 270 27 18 chr1 7694363 7694474 -274499190 + L1MC4 LINE L1 7914 8025 -17 1070 195 69 8 chr1 7695014 7695275 -274498389 - MER58 DNA MER1_type -2140 280 4 1983 162 26 0 chr1 7695690 7695993 -274497671 - AluJo SINE Alu -1 311 1 2079 107 3 30 chr1 7696203 7696502 -274497162 - AluSx SINE Alu -21 291 1 219 286 79 0 chr1 7698618 7698681 -274494983 - MIR SINE MIR -161 101 34 2355 83 0 3 chr1 7699550 7699873 -274493791 + AluSx SINE Alu 1 312 0 6027 239 100 29 chr1 7700203 7701396 -274492268 - L1MC4a LINE L1 -1 7807 6700 2124 114 0 7 chr1 7701396 7701695 -274491969 - AluSg1 SINE Alu -12 297 1 6027 239 100 29 chr1 7701695 7702872 -274490792 - L1MC4a LINE L1 -1108 6700 5269 382 305 58 13 chr1 7702894 7703048 -274490616 - L1MC4a LINE L1 -913 5233 5073 256 273 76 30 chr1 7703273 7703471 -274490193 - L1P LINE L1 -1488 4658 4452 2168 127 13 0 chr1 7703524 7703832 -274489832 - AluSx SINE Alu 0 312 1 205 0 54 54 chr1 7704080 7704117 -274489547 + (TTTTTA)n Simple_repeat Simple_repeat 2 38 0 1723 189 30 0 chr1 7704119 7704415 -274489249 + AluJb SINE Alu 3 307 -5 2276 113 0 3 chr1 7704415 7704715 -274488949 + AluSg SINE Alu 1 299 -11 44 0 0 0 chr1 7704715 7704759 -274488905 + AT_rich Low_complexity Low_complexity 1 44 0 238 304 108 0 chr1 7704854 7704956 -274488708 + Charlie2a DNA MER1_type 16 128 -2654 517 296 101 20 chr1 7705039 7705384 -274488280 + Charlie2a DNA MER1_type 262 634 -2228 1155 201 145 15 chr1 7705653 7706047 -274487617 - L1ME2 LINE L1 -24 6140 5696 333 132 9 0 chr1 7706167 7706223 -274487441 + L1M4 LINE L1 3773 3832 -2314 337 218 135 23 chr1 7706320 7706453 -274487211 + L1M4 LINE L1 4020 4167 -1979 812 190 71 16 chr1 7706619 7706803 -274486861 + MER20 DNA MER1_type 26 219 0 453 183 11 21 chr1 7707282 7707329 -274486335 + MER3 DNA MER1_type 2 47 -162 391 204 7 120 chr1 7707329 7707471 -274486193 - MER3 DNA MER1_type 0 209 84 929 176 7 0 chr1 7707592 7707740 -274485924 + AluJo SINE Alu 1 149 -163 638 186 0 25 chr1 7707740 7707858 -274485806 - AluJb SINE Alu -197 115 1 240 35 0 0 chr1 7709236 7709265 -274484399 + (TG)n Simple_repeat Simple_repeat 2 30 0 1599 147 0 63 chr1 7709985 7710285 -274483379 + AluJb SINE Alu 1 281 -31 235 0 57 0 chr1 7710293 7710328 -274483336 + (TAAA)n Simple_repeat Simple_repeat 3 39 0 2245 116 3 3 chr1 7710694 7711004 -274482660 + AluSg SINE Alu 1 310 0 803 287 40 12 chr1 7712812 7713140 -274480524 + MER46C DNA MER2_type 2 338 0 1650 191 0 3 chr1 7713178 7713476 -274480188 - AluJb SINE Alu -14 298 2 324 272 48 16 chr1 7714049 7714174 -274479490 + MIR SINE MIR 31 159 -103 2428 71 0 0 chr1 7714276 7714572 -274479092 - AluSc SINE Alu -13 296 1 217 286 0 0 chr1 7714596 7714645 -274479019 + CT-rich Low_complexity Low_complexity 3 51 0 1592 218 102 54 chr1 7714883 7715241 -274478423 - L1MC4 LINE L1 -149 7893 7491 640 186 0 161 chr1 7715241 7715440 -274478224 - FAM SINE Alu -8 167 1 1592 218 102 54 chr1 7715440 7715706 -274477958 - L1MC4 LINE L1 -551 7491 7239 613 262 87 12 chr1 7715707 7716116 -274477548 - L1MC4 LINE L1 -961 7081 6469 409 328 64 23 chr1 7716799 7717064 -274476600 + L1MEd LINE L1 538 813 -5306 418 286 135 33 chr1 7717074 7717319 -274476345 - MLT1J LTR MaLR -55 456 187 1930 126 7 48 chr1 7717366 7717503 -274476161 + AluSx SINE Alu 1 121 -191 2214 100 3 10 chr1 7717503 7717802 -274475862 + AluSq SINE Alu 1 297 -16 1930 126 7 48 chr1 7717802 7717958 -274475706 + AluSx SINE Alu 121 282 -30 352 309 103 17 chr1 7718040 7718204 -274475460 + L1 LINE L1 3595 3768 -2378 1533 110 53 8 chr1 7718324 7718588 -274475076 - L1MA2 LINE L1 0 6304 6029 251 302 26 73 chr1 7718591 7718783 -274474881 + L1 LINE L1 3908 4090 -2056 1579 181 43 0 chr1 7718940 7719221 -274474443 - AluSx SINE Alu -15 297 5 846 95 0 0 chr1 7719264 7719390 -274474274 + (TAGA)n Simple_repeat Simple_repeat 3 128 0 2892 9 0 0 chr1 7719407 7719723 -274473941 + AluYb8 SINE Alu 1 316 -2 2306 82 0 35 chr1 7720798 7721113 -274472551 + AluY SINE Alu 1 304 -7 21 0 0 0 chr1 7721159 7721180 -274472484 + AT_rich Low_complexity Low_complexity 1 21 0 352 222 11 33 chr1 7721209 7721299 -274472365 - L1MC4 LINE L1 -29 8013 7926 1062 150 0 0 chr1 7721351 7721524 -274472140 + MER46B DNA MER2_type 2 49 -187 1354 221 66 48 chr1 7721575 7721610 -274472054 - L1MC4 LINE L1 -98 7944 7911 824 180 97 61 chr1 7721610 7721838 -274471826 - MER46A DNA MER2_type 0 236 1 1354 221 66 48 chr1 7721838 7722317 -274471347 - L1MC4 LINE L1 -131 7911 7421 1720 137 19 60 chr1 7727185 7727500 -274466164 - AluJb SINE Alu -10 302 1 2255 110 0 3 chr1 7727510 7727810 -274465854 - AluSq SINE Alu -14 299 1 257 248 142 35 chr1 7728454 7728595 -274465069 + L2 LINE L2 3158 3313 0 415 250 132 48 chr1 7728604 7728832 -274464832 + MIR SINE MIR 14 260 -2 32 0 0 0 chr1 7728891 7728923 -274464741 + AT_rich Low_complexity Low_complexity 1 32 0 699 194 0 0 chr1 7728931 7729039 -274464625 - FLAM_C SINE Alu -34 109 2 198 0 0 0 chr1 7729623 7729645 -274464019 + (T)n Simple_repeat Simple_repeat 1 22 0 246 326 44 37 chr1 7730081 7730216 -274463448 + MIR3 SINE MIR 72 207 -1 220 200 0 0 chr1 7730300 7730345 -274463319 + T-rich Low_complexity Low_complexity 4 48 0 221 357 12 12 chr1 7730562 7730646 -274463018 - L2 LINE L2 -73 3199 3116 234 333 78 7 chr1 7730789 7730930 -274462734 - MIR SINE MIR -38 224 74 1092 145 12 6 chr1 7730959 7731131 -274462533 - AluJo SINE Alu -22 290 118 808 174 0 28 chr1 7731160 7731304 -274462360 - FLAM_C SINE Alu -2 141 2 207 100 0 0 chr1 7731445 7731475 -274462189 + (TTTA)n Simple_repeat Simple_repeat 3 32 0 251 234 0 0 chr1 7731476 7731523 -274462141 - MER66A LTR ERV1 -142 336 290 237 179 45 60 chr1 7733201 7733268 -274460396 - L1MD3 LINE L1 -11 7984 7919 * 256 271 0 0 chr1 7733257 7733316 -274460348 - L1MD2 LINE L1 -103 6256 6198 958 234 102 0 chr1 7733319 7733575 -274460089 - L1MD2 LINE L1 -216 6143 5862 765 262 24 36 chr1 7733732 7733984 -274459680 + MIR SINE MIR 14 262 0 208 225 300 0 chr1 7734027 7734107 -274459557 + MIR SINE MIR 159 262 0 1734 149 19 38 chr1 7734150 7734465 -274459199 - AluSx SINE Alu -3 309 1 207 0 0 0 chr1 7734736 7734759 -274458905 + (TTG)n Simple_repeat Simple_repeat 2 24 0 1690 118 110 0 chr1 7734761 7735024 -274458640 - AluSx SINE Alu -20 292 1 1517 151 61 29 chr1 7735026 7735304 -274458360 - AluJo SINE Alu -18 294 8 228 175 222 0 chr1 7735417 7735480 -274458184 + MIR SINE MIR 186 262 0 2092 128 6 6 chr1 7735639 7735952 -274457712 - AluSq SINE Alu 0 313 1 3900 194 69 35 chr1 7735993 7736594 -274457070 + Charlie1 DNA MER1_type 1682 2329 -432 1836 124 0 4 chr1 7736594 7736875 -274456789 - AluSq SINE Alu 0 308 29 3900 194 69 35 chr1 7736875 7737208 -274456456 + Charlie1 DNA MER1_type 2329 2649 -112 21 0 0 0 chr1 7737220 7737241 -274456423 + AT_rich Low_complexity Low_complexity 1 21 0 297 120 0 0 chr1 7737950 7738000 -274455664 + Charlie1 DNA MER1_type 2706 2755 -6 2986 6 0 0 chr1 7738067 7738385 -274455279 + AluYb8 SINE Alu 1 318 0 201 74 0 0 chr1 7738606 7738633 -274455031 + (A)n Simple_repeat Simple_repeat 1 27 0 765 189 8 0 chr1 7739350 7739477 -274454187 + FLAM_C SINE Alu 5 132 -1 309 178 22 22 chr1 7740278 7740368 -274453296 + CT-rich Low_complexity Low_complexity 1 90 0 1643 159 52 3 chr1 7740585 7740874 -274452790 - AluJo SINE Alu -9 303 1 347 197 45 0 chr1 7740875 7740941 -274452723 + L2 LINE L2 3232 3300 -13 447 68 0 0 chr1 7740941 7741000 -274452664 + (TGGA)n Simple_repeat Simple_repeat 1 59 0 1512 130 25 105 chr1 7741153 7741477 -274452187 + AluYb8 SINE Alu 1 298 -20 2064 148 52 27 chr1 7741927 7742331 -274451333 - L1MB3 LINE L1 -28 6155 5742 2228 117 3 3 chr1 7742361 7742669 -274450995 + AluSx SINE Alu 1 308 -4 2180 96 7 7 chr1 7742691 7742984 -274450680 + AluSx SINE Alu 1 293 -19 808 166 11 40 chr1 7743098 7743273 -274450391 - AluJb SINE Alu -6 306 137 433 242 45 32 chr1 7743450 7743607 -274450057 + MER104 DNA Tc2 6 164 -16 1782 156 25 0 chr1 7744581 7744856 -274448808 + AluJb SINE Alu 13 294 -18 1566 260 95 46 chr1 7744862 7745531 -274448133 - L1MC5 LINE L1 -36 7925 7215 2316 84 0 3 chr1 7745531 7745828 -274447836 - AluSg SINE Alu -14 296 1 1566 260 95 46 chr1 7745828 7745893 -274447771 - L1MC5 LINE L1 -746 7215 7155 779 281 38 61 chr1 7745958 7746643 -274447021 - L1MC5 LINE L1 -850 6958 6281 1888 232 56 52 chr1 7746716 7747262 -274446402 - L1MC5 LINE L1 -1862 5946 5394 6285 77 17 45 chr1 7747262 7748881 -274444783 - SVA Other Other -589 1386 213 1888 232 56 52 chr1 7748881 7748962 -274444702 - L1MC5 LINE L1 -2414 5394 5315 181 218 109 0 chr1 7749016 7749071 -274444593 - L2 LINE L2 -12 3260 3200 2150 101 0 3 chr1 7749110 7749438 -274444226 - AluSx SINE Alu 0 327 1 340 272 103 22 chr1 7749620 7749804 -274443860 + Charlie8 DNA MER1_type 15 213 -2204 367 218 26 0 chr1 7749861 7749939 -274443725 + MER33 DNA MER1_type 1 80 -244 339 224 0 0 chr1 7749941 7750017 -274443647 + MER33 DNA MER1_type 249 324 0 442 296 118 39 chr1 7750293 7750496 -274443168 - L1ME2 LINE L1 0 6164 5946 333 0 0 0 chr1 7750506 7750543 -274443121 + (TG)n Simple_repeat Simple_repeat 2 38 0 2458 103 0 0 chr1 7750552 7750862 -274442802 - AluSx SINE Alu -2 310 1 183 100 0 0 chr1 7750884 7750914 -274442750 + (TTTAA)n Simple_repeat Simple_repeat 3 32 0 2093 109 0 7 chr1 7750914 7751197 -274442467 - AluSg1 SINE Alu -28 281 1 1262 98 5 16 chr1 7752219 7752403 -274441261 + L1PA8 LINE L1 5991 6172 0 1202 148 0 68 chr1 7752757 7752994 -274440670 - AluJo SINE Alu 0 312 92 1419 188 90 4 chr1 7753106 7753383 -274440281 - AluJo SINE Alu -11 301 1 2211 118 10 0 chr1 7753666 7753963 -274439701 + AluSx SINE Alu 3 302 -10 351 244 44 67 chr1 7754483 7754539 -274439125 - MIR SINE MIR -48 214 158 2193 82 65 0 chr1 7754539 7754831 -274438833 - AluY SINE Alu 0 311 1 351 244 44 67 chr1 7754831 7754909 -274438755 - MIR SINE MIR -104 158 83 202 283 75 0 chr1 7755584 7755637 -274438027 - L3 LINE CR1 -21 1556 1500 238 189 257 27 chr1 7755991 7756065 -274437599 - MIR3 SINE MIR -25 183 93 1597 168 0 82 chr1 7756172 7756357 -274437307 - AluJb SINE Alu -11 301 153 1545 173 20 47 chr1 7756357 7756658 -274437006 - AluJb SINE Alu -19 293 1 1597 168 0 82 chr1 7756658 7756800 -274436864 - AluJb SINE Alu -159 153 1 1092 146 5 66 chr1 7757633 7757814 -274435850 - AluJb SINE Alu 0 312 140 2310 89 23 0 chr1 7757814 7758117 -274435547 - AluSp SINE Alu -3 310 1 1092 146 5 66 chr1 7758117 7758166 -274435498 - AluJb SINE Alu -172 140 90 3690 235 111 64 chr1 7758295 7758902 -274434762 - L1ME1 LINE L1 -6 6160 5583 2063 90 62 7 chr1 7758902 7759192 -274434472 - AluSc SINE Alu 0 309 4 3690 235 111 64 chr1 7759192 7759206 -274434458 - L1ME1 LINE L1 -583 5583 5571 2408 70 0 13 chr1 7759206 7759507 -274434157 - AluY SINE Alu -14 297 1 3690 235 111 64 chr1 7759507 7759894 -274433770 - L1ME1 LINE L1 -595 5571 5203 1595 154 41 69 chr1 7759894 7760213 -274433451 - AluJo SINE Alu -2 310 1 3690 235 111 64 chr1 7760213 7760733 -274432931 - L1ME1 LINE L1 -963 5203 4708 2353 110 0 0 chr1 7760733 7761042 -274432622 + AluSq SINE Alu 4 312 -1 3690 235 111 64 chr1 7761042 7761174 -274432490 - L1ME1 LINE L1 -1458 4708 4584 712 169 7 70 chr1 7761174 7761316 -274432348 - FLAM_A SINE Alu 0 133 1 3690 235 111 64 chr1 7761316 7761681 -274431983 - L1ME1 LINE L1 -1582 4584 4237 1701 174 37 0 chr1 7761681 7761975 -274431689 - AluJb SINE Alu -7 305 1 3690 235 111 64 chr1 7761975 7762490 -274431174 - L1ME1 LINE L1 -1929 4237 3492 207 100 0 0 chr1 7762490 7762520 -274431144 + (T)n Simple_repeat Simple_repeat 1 30 0 1957 244 136 30 chr1 7762555 7763178 -274430486 - L1ME1 LINE L1 -2885 3261 2705 2413 80 0 3 chr1 7763178 7763479 -274430185 + AluSc SINE Alu 1 300 -9 1957 244 136 30 chr1 7763479 7763866 -274429798 - L1ME1 LINE L1 -3441 2705 2144 2157 114 3 0 chr1 7763906 7764196 -274429468 - AluSp SINE Alu -22 291 1 2127 112 10 0 chr1 7764553 7764847 -274428817 + AluSx SINE Alu 1 297 -15 24 32 0 0 chr1 7764848 7764879 -274428785 + AT_rich Low_complexity Low_complexity 1 31 0 240 313 15 0 chr1 7765602 7765669 -274427995 + L2 LINE L2 3205 3272 0 24 67 0 0 chr1 7766373 7766418 -274427246 + AT_rich Low_complexity Low_complexity 1 45 0 2362 88 7 10 chr1 7766568 7766876 -274426788 - AluY SINE Alu -4 307 1 859 162 0 13 chr1 7767094 7767248 -274426416 - L1MB8 LINE L1 -190 5988 5837 267 300 150 46 chr1 7767264 7767591 -274426073 - L3 LINE CR1 -422 1155 795 377 278 31 0 chr1 7767648 7767745 -274425919 - MIR SINE MIR -18 244 145 2253 96 3 0 chr1 7767862 7768155 -274425509 + AluSc SINE Alu 1 294 -15 2319 111 0 0 chr1 7768540 7768837 -274424827 + AluSx SINE Alu 1 297 -15 2315 111 0 0 chr1 7768840 7769147 -274424517 + AluSg SINE Alu 3 309 -1 1287 234 122 20 chr1 7769443 7769901 -274423763 - MLT1D LTR MaLR 0 505 1 54 40 0 0 chr1 7769912 7769987 -274423677 + AT_rich Low_complexity Low_complexity 1 75 0 24 0 0 0 chr1 7770024 7770048 -274423616 + AT_rich Low_complexity Low_complexity 1 24 0 800 168 0 0 chr1 7770048 7770173 -274423491 - FLAM_C SINE Alu -18 125 1 271 288 158 17 chr1 7772971 7773148 -274420516 + MIR SINE MIR 52 253 -9 2327 108 0 16 chr1 7773564 7773880 -274419784 - AluSx SINE Alu -1 311 1 2333 100 0 0 chr1 7773885 7774184 -274419480 - AluSx SINE Alu -13 299 1 217 235 123 12 chr1 7775863 7775944 -274417720 + L2 LINE L2 3182 3271 -1 2095 118 0 0 chr1 7777164 7777452 -274416212 + AluSq SINE Alu 1 288 -25 1597 186 10 3 chr1 7777462 7777758 -274415906 + AluJo SINE Alu 1 298 -14 949 174 60 5 chr1 7777763 7777964 -274415700 + AluJb SINE Alu 89 300 -12 297 164 75 15 chr1 7777975 7778042 -274415622 + L2 LINE L2 3201 3271 -1 2293 76 7 7 chr1 7778159 7778462 -274415202 + AluSc SINE Alu 1 303 -6 2067 86 38 3 chr1 7778723 7779013 -274414651 + AluSx SINE Alu 1 300 -12 1921 122 0 31 chr1 7779620 7779939 -274413725 - AluSg SINE Alu -1 309 1 744 278 5 5 chr1 7780145 7780336 -274413328 - MIR SINE MIR -59 203 13 1599 171 16 44 chr1 7780349 7780670 -274412994 - AluJb SINE Alu 0 312 1 32 43 0 0 chr1 7781064 7781110 -274412554 + AT_rich Low_complexity Low_complexity 1 46 0 2393 81 0 0 chr1 7781332 7781640 -274412024 + AluY SINE Alu 1 308 -3 203 231 154 51 chr1 7781725 7781842 -274411822 - L2 LINE L2 -5 3308 3180 296 235 59 0 chr1 7782093 7782161 -274411503 + L2 LINE L2 3190 3261 -52 500 232 120 21 chr1 7782758 7782900 -274410764 + MIR SINE MIR 44 199 -63 578 218 0 63 chr1 7783728 7783870 -274409794 - FLAM_A SINE Alu 0 133 1 399 288 297 10 chr1 7784330 7784989 -274408675 - L2 LINE L2 -1 3312 2459 676 160 25 8 chr1 7786366 7786515 -274407149 - FLAM_A SINE Alu 0 151 1 1185 162 0 40 chr1 7787208 7787436 -274406228 + AluJo SINE Alu 87 305 -7 237 108 0 0 chr1 7787479 7787516 -274406148 + (TCC)n Simple_repeat Simple_repeat 3 39 0 180 111 0 0 chr1 7790671 7790698 -274402966 + (TG)n Simple_repeat Simple_repeat 1 27 0 1892 144 7 0 chr1 7791375 7791674 -274401990 + AluSx SINE Alu 1 301 -11 1023 256 133 36 chr1 7792188 7792633 -274401031 - L2 LINE L2 0 3313 2826 226 358 51 7 chr1 7793455 7793592 -274400072 + L2 LINE L2 3170 3312 -1 514 101 0 0 chr1 7793965 7794044 -274399620 + AluJ/FRAM SINE Alu 232 310 -2 239 232 72 120 chr1 7794306 7794431 -274399233 + MIR3 SINE MIR 9 127 -81 2067 111 0 3 chr1 7794439 7794750 -274398914 - AluSg SINE Alu 0 310 2 2080 119 0 10 chr1 7795458 7795752 -274397912 - AluSx SINE Alu -21 291 1 195 341 24 0 chr1 7797077 7797162 -274396502 - L2 LINE L2 -205 3067 2981 383 226 57 28 chr1 7797448 7797554 -274396110 + MER5B DNA MER1_type 12 120 -58 200 260 244 65 chr1 7797646 7797769 -274395895 - MER5B DNA MER1_type -21 157 13 2188 106 0 3 chr1 7797826 7798128 -274395536 - AluSx SINE Alu -11 301 1 384 274 160 23 chr1 7799119 7799294 -274394370 - L2 LINE L2 -2 3311 3113 980 97 0 0 chr1 7800401 7800583 -274393081 - AluSg SINE Alu 0 329 148 212 216 0 0 chr1 7800602 7800639 -274393025 + L2 LINE L2 3230 3266 -6 1181 81 0 0 chr1 7800651 7800800 -274392864 - AluSg SINE Alu -161 149 1 186 270 0 0 chr1 7801082 7801119 -274392545 - L2 LINE L2 -6 3266 3230 6663 121 6 119 chr1 7801626 7802298 -274391366 + L1P LINE L1 826 1258 -4888 2187 63 20 20 chr1 7802298 7802601 -274391063 + AluY SINE Alu 1 303 -8 6663 121 6 119 chr1 7802601 7803329 -274390335 + L1P LINE L1 1258 2067 -4079 2026 58 4 8 chr1 7803326 7803584 -274390080 + L1PA7 LINE L1 5878 6134 -20 * 519 172 172 22 chr1 7804161 7804341 -274389323 - Charlie2 DNA MER1_type -31 2831 2625 2081 177 33 3 chr1 7804358 7804719 -274388945 - MSTA LTR MaLR -54 374 3 9117 168 33 12 chr1 7804721 7805797 -274387867 - MSTA-int LTR MaLR 0 1651 528 2037 107 33 3 chr1 7805797 7806096 -274387568 - AluSg SINE Alu -2 308 1 9117 168 33 12 chr1 7806096 7806636 -274387028 - MSTA-int LTR MaLR -1123 528 1 1326 159 14 0 chr1 7806639 7806846 -274386818 - MSTA LTR MaLR -3 425 216 619 237 93 34 chr1 7806846 7806871 -274386793 - Charlie2 DNA MER1_type -232 2630 2608 1894 133 10 17 chr1 7806871 7807173 -274386491 - AluSx SINE Alu -11 301 2 619 237 93 34 chr1 7807173 7807468 -274386196 - Charlie2 DNA MER1_type -254 2608 2291 890 261 53 0 chr1 7807515 7807779 -274385885 - Charlie2 DNA MER1_type -728 2134 1857 329 268 105 67 chr1 7807782 7807991 -274385673 - Charlie2 DNA MER1_type -2457 325 109 245 204 56 0 chr1 7808299 7808353 -274385311 + Charlie4a DNA MER1_type 276 332 -176 1998 107 7 39 chr1 7808362 7808672 -274384992 - AluSx SINE Alu -12 300 1 2096 92 14 3 chr1 7808672 7808964 -274384700 - AluSc SINE Alu -14 295 1 385 136 61 0 chr1 7808971 7809037 -274384627 + Charlie4a DNA MER1_type 434 503 -5 2203 96 0 3 chr1 7809185 7809487 -274384177 - AluSq SINE Alu -12 301 1 490 137 0 0 chr1 7810770 7810843 -274382821 + L1MC1 LINE L1 6254 6326 -7 1407 182 22 35 chr1 7810988 7811301 -274382363 + AluJo SINE Alu 1 309 -3 1416 169 63 3 chr1 7812346 7812648 -274381016 + MER33 DNA MER1_type 1 320 -4 2103 104 0 0 chr1 7812933 7813239 -274380425 - AluSg SINE Alu 0 306 1 497 273 100 45 chr1 7813895 7814115 -274379549 - L2 LINE L2 0 3313 3082 1022 269 110 63 chr1 7814201 7814802 -274378862 - MLT1G LTR MaLR 0 590 1 243 218 13 39 chr1 7814869 7814947 -274378717 + MIR3 SINE MIR 127 202 -6 2794 10 0 0 chr1 7815418 7815730 -274377934 + AluYb8 SINE Alu 1 312 -6 255 61 0 0 chr1 7816265 7816298 -274377366 + (TATATG)n Simple_repeat Simple_repeat 5 37 0 585 124 39 8 chr1 7817513 7817642 -274376022 + Tigger3(Golem) DNA MER2_type 2499 2631 -398 3639 133 15 0 chr1 7817642 7818161 -274375503 - MER1A DNA MER1_type 0 527 1 255 338 93 13 chr1 7818373 7818524 -274375140 + MIR SINE MIR 24 186 -76 577 250 16 0 chr1 7820061 7820185 -274373479 + MIR SINE MIR 120 245 -17 200 59 29 0 chr1 7820460 7820494 -274373170 + (TTTTTA)n Simple_repeat Simple_repeat 5 39 0 207 0 0 0 chr1 7821620 7821643 -274372021 + (T)n Simple_repeat Simple_repeat 1 23 0 360 273 258 11 chr1 7821743 7822010 -274371654 - L2 LINE L2 -962 2352 2020 215 278 0 0 chr1 7822066 7822120 -274371544 + L2 LINE L2 2560 2613 -701 859 152 0 0 chr1 7822127 7822252 -274371412 + FLAM_C SINE Alu 3 127 -6 2361 57 14 0 chr1 7822812 7823108 -274370556 - AluY SINE Alu -11 300 1 633 237 184 4 chr1 7823239 7823443 -274370221 + MIR SINE MIR 23 256 -6 191 130 0 22 chr1 7825363 7825409 -274368255 + (CGGGGG)n Simple_repeat Simple_repeat 3 47 0 22 0 0 0 chr1 7825458 7825480 -274368184 + GC_rich Low_complexity Low_complexity 1 22 0 48 18 0 0 chr1 7825514 7825569 -274368095 + GC_rich Low_complexity Low_complexity 1 55 0 204 40 0 0 chr1 7828959 7828984 -274364680 + (TC)n Simple_repeat Simple_repeat 2 26 0 625 161 98 18 chr1 7828984 7829096 -274364568 - FLAM_A SINE Alu -12 121 1 511 250 43 18 chr1 7829456 7829626 -274364038 + MIR SINE MIR 52 226 -36 224 346 49 47 chr1 7831276 7831604 -274362060 - L2 LINE L2 -223 3049 2722 26 0 0 0 chr1 7831842 7831868 -274361796 + AT_rich Low_complexity Low_complexity 1 26 0 299 301 240 0 chr1 7832321 7832467 -274361197 + MER5A DNA MER1_type 9 189 0 2578 61 0 3 chr1 7832668 7832978 -274360686 - AluY SINE Alu -2 309 1 2168 89 0 40 chr1 7834714 7835017 -274358647 - AluSc SINE Alu -18 291 1 2196 125 3 0 chr1 7835204 7835508 -274358156 - AluSp SINE Alu -8 305 1 2022 144 23 3 chr1 7835638 7835943 -274357721 + AluJb SINE Alu 1 311 -1 22 0 0 0 chr1 7835943 7835965 -274357699 + AT_rich Low_complexity Low_complexity 1 22 0 870 276 44 8 chr1 7837557 7837807 -274355857 - MLT1H1 LTR MaLR -39 516 258 470 155 136 19 chr1 7837867 7837970 -274355694 + FLAM_A SINE Alu 22 136 -6 268 320 33 26 chr1 7838729 7838882 -274354782 - L3 LINE CR1 -163 1414 1261 234 0 0 0 chr1 7839286 7839312 -274354352 + (A)n Simple_repeat Simple_repeat 1 26 0 195 343 38 9 chr1 7841556 7841661 -274352003 - MIR SINE MIR -51 211 104 871 205 20 37 chr1 7842638 7842853 -274350811 - L1MD3 LINE L1 0 8040 7844 1336 142 127 40 chr1 7842928 7843181 -274350483 + AluJb SINE Alu 17 291 -21 369 261 126 85 chr1 7843312 7843350 -274350314 - L1ME4a LINE L1 -57 6064 6029 2302 95 7 0 chr1 7843350 7843644 -274350020 + AluSc SINE Alu 1 296 -13 369 261 126 85 chr1 7843644 7844168 -274349496 - L1ME4a LINE L1 -92 6029 5479 660 128 29 20 chr1 7844738 7844840 -274348824 + AluJo/FLAM SINE Alu 14 116 -196 2239 88 40 3 chr1 7844840 7845137 -274348527 - AluY SINE Alu -3 308 1 2323 96 0 3 chr1 7845156 7845459 -274348205 + AluSc SINE Alu 1 302 -7 404 254 108 88 chr1 7845461 7845619 -274348045 + L1ME LINE L1 3059 3212 -2934 1639 120 0 0 chr1 7845619 7845835 -274347829 + AluSq SINE Alu 1 216 -97 404 254 108 88 chr1 7845835 7846088 -274347576 + L1ME LINE L1 3212 3459 -2687 2361 91 0 0 chr1 7846088 7846386 -274347278 + AluSg SINE Alu 1 298 -12 404 254 108 88 chr1 7846386 7846730 -274346934 + L1ME LINE L1 3459 3830 -2316 1060 209 225 57 chr1 7846752 7847118 -274346546 - MLT1G LTR MaLR 0 590 131 2238 81 7 18 chr1 7847118 7847426 -274346238 + AluSc SINE Alu 1 305 0 1060 209 225 57 chr1 7847426 7847512 -274346152 - MLT1G LTR MaLR -459 131 61 1836 167 14 0 chr1 7847512 7847805 -274345859 - AluJb SINE Alu -13 299 3 213 39 0 0 chr1 7847817 7847843 -274345821 + (TTTA)n Simple_repeat Simple_repeat 1 26 0 621 155 0 0 chr1 7847845 7847948 -274345716 - AluSg/x SINE Alu -32 278 176 477 206 72 0 chr1 7847952 7848049 -274345615 - MLT1G LTR MaLR -490 105 2 306 0 0 0 chr1 7848212 7848246 -274345418 + (TA)n Simple_repeat Simple_repeat 2 35 0 1855 138 0 46 chr1 7848248 7848552 -274345112 - AluJb SINE Alu -11 301 12 267 293 24 0 chr1 7848568 7848650 -274345014 + L1ME LINE L1 4029 4112 -2034 1711 184 7 0 chr1 7848733 7849011 -274344653 + AluJo SINE Alu 1 280 -32 297 0 0 0 chr1 7849029 7849062 -274344602 + (CA)n Simple_repeat Simple_repeat 2 34 0 483 280 157 39 chr1 7849072 7849258 -274344406 + L1ME LINE L1 4176 4339 -1827 682 227 0 0 chr1 7849258 7849386 -274344278 + FLAM_A SINE Alu 1 128 -5 483 280 157 39 chr1 7849386 7850412 -274343252 + L1ME LINE L1 4339 5541 -625 264 229 202 9 chr1 7851287 7851396 -274342268 + L2 LINE L2 3142 3271 -1 345 348 21 0 chr1 7851804 7851945 -274341719 + MIR SINE MIR 49 192 -70 591 294 72 17 chr1 7851946 7852181 -274341483 - MIR SINE MIR -9 253 6 802 148 32 19 chr1 7852466 7852621 -274341043 + L1MB5 LINE L1 6010 6166 -8 2344 100 0 3 chr1 7853790 7854090 -274339574 - AluSg SINE Alu -11 299 1 490 226 90 0 chr1 7854731 7854864 -274338800 + MIR SINE MIR 49 193 -69 252 100 0 0 chr1 7856839 7856879 -274336785 + (TAGA)n Simple_repeat Simple_repeat 1 40 0 427 345 112 24 chr1 7857128 7857236 -274336428 - L2 LINE L2 0 3313 3216 1935 143 34 3 chr1 7857236 7857530 -274336134 - AluSx SINE Alu -9 303 1 427 345 112 24 chr1 7857530 7857887 -274335777 - L2 LINE L2 -97 3216 2807 406 269 0 21 chr1 7857924 7858100 -274335564 - MIR SINE MIR -19 243 7 285 319 70 75 chr1 7858103 7858558 -274335106 - L2 LINE L2 -540 2774 2322 24 53 0 0 chr1 7858604 7858642 -274335022 + AT_rich Low_complexity Low_complexity 1 38 0 2790 20 0 0 chr1 7860665 7860966 -274332698 + AluYb8 SINE Alu 1 301 -17 272 182 2 0 chr1 7861089 7861146 -274332518 - L1ME3 LINE L1 -196 5968 5911 1094 266 109 30 chr1 7861212 7862351 -274331313 - L1ME3 LINE L1 -356 5806 4577 490 237 51 0 chr1 7862569 7862725 -274330939 - L1M LINE L1 -735 5427 5264 24 0 0 0 chr1 7863015 7863039 -274330625 + AT_rich Low_complexity Low_complexity 1 24 0 231 36 0 0 chr1 7863232 7863260 -274330404 + (A)n Simple_repeat Simple_repeat 1 28 0 270 0 0 0 chr1 7863260 7863290 -274330374 + (TA)n Simple_repeat Simple_repeat 2 31 0 2046 72 0 27 chr1 7863290 7863553 -274330111 - AluY SINE Alu -5 306 51 216 67 0 0 chr1 7863560 7863590 -274330074 + (TTTG)n Simple_repeat Simple_repeat 1 30 0 2282 103 0 0 chr1 7865385 7865705 -274327959 - AluSg SINE Alu 0 320 1 341 230 0 0 chr1 7866510 7866584 -274327080 - MIR SINE MIR -113 149 76 671 173 168 39 chr1 7866586 7866765 -274326899 + MER105 DNA DNA 1 202 -2 215 316 43 51 chr1 7867914 7868031 -274325633 - L2 LINE L2 -16 3256 3141 2097 134 0 29 chr1 7868637 7868943 -274324721 + AluSg SINE Alu 1 297 -13 2237 141 32 3 chr1 7870514 7870890 -274322774 - MLT1B LTR MaLR 0 390 4 42 20 0 0 chr1 7872188 7872237 -274321427 + AT_rich Low_complexity Low_complexity 1 49 0 291 294 20 0 chr1 7873220 7873322 -274320342 + MIR SINE MIR 86 189 -73 25 65 0 0 chr1 7874903 7874949 -274318715 + AT_rich Low_complexity Low_complexity 1 46 0 324 0 0 0 chr1 7876740 7876776 -274316888 + (CA)n Simple_repeat Simple_repeat 2 37 0 987 260 134 67 chr1 7878800 7879195 -274314469 - L1ME1 LINE L1 -25 6141 5667 2313 48 3 7 chr1 7879195 7879484 -274314180 + AluY SINE Alu 1 288 -23 987 260 134 67 chr1 7879484 7879651 -274314013 - L1ME1 LINE L1 -499 5667 5513 270 81 0 0 chr1 7879734 7879771 -274313893 + (T)n Simple_repeat Simple_repeat 1 37 0 306 65 0 0 chr1 7879771 7879817 -274313847 - U5 snRNA snRNA -65 51 6 1331 209 16 35 chr1 7880049 7880365 -274313299 - AluJo SINE Alu 0 312 3 849 125 0 52 chr1 7880369 7880505 -274313159 - FLAM_C SINE Alu -3 130 2 2393 74 0 16 chr1 7880785 7881097 -274312567 - AluY SINE Alu -4 307 1 267 54 0 0 chr1 7882343 7882380 -274311284 + (T)n Simple_repeat Simple_repeat 1 37 0 333 264 0 112 chr1 7882940 7883065 -274310599 + L2 LINE L2 3191 3301 -12 1503 232 24 18 chr1 7886884 7887225 -274306439 + MER2 DNA MER2_type 1 343 -1 198 0 0 0 chr1 7889454 7889476 -274304188 + (GGAGAA)n Simple_repeat Simple_repeat 1 22 0 215 261 0 0 chr1 7891022 7891087 -274302577 + (CCA)n Simple_repeat Simple_repeat 1 65 0 505 295 116 62 chr1 7892042 7892507 -274301157 - L2 LINE L2 -2 3311 2822 203 61 30 0 chr1 7893253 7893286 -274300378 + (TTCA)n Simple_repeat Simple_repeat 3 36 0 29 28 0 0 chr1 7894638 7894674 -274298990 + AT_rich Low_complexity Low_complexity 1 36 0 23 33 0 0 chr1 7894849 7894879 -274298785 + AT_rich Low_complexity Low_complexity 1 30 0 24 0 0 0 chr1 7898625 7898649 -274295015 + GC_rich Low_complexity Low_complexity 1 24 0 497 118 0 21 chr1 7899554 7899647 -274294017 + (TGGA)n Simple_repeat Simple_repeat 1 91 0 286 314 124 13 chr1 7901462 7901615 -274292049 + MIR SINE MIR 33 202 -60 2442 73 0 0 chr1 7901682 7901985 -274291679 - AluY SINE Alu -8 303 1 258 287 130 13 chr1 7902440 7902620 -274291044 + MIR SINE MIR 18 216 -46 182 335 87 64 chr1 7903730 7903903 -274289761 + L2 LINE L2 2874 3050 -263 223 347 107 0 chr1 7903970 7904091 -274289573 + L2 LINE L2 3180 3313 0 534 235 0 0 chr1 7904099 7904269 -274289395 + (TGGA)n Simple_repeat Simple_repeat 2 171 0 282 250 0 0 chr1 7904306 7904394 -274289270 + (TGGA)n Simple_repeat Simple_repeat 1 88 0 508 182 214 73 chr1 7904489 7904681 -274288983 - MER20 DNA MER1_type 0 219 1 1506 126 4 17 chr1 7906038 7906268 -274287396 - AluJo SINE Alu 0 312 86 977 281 43 7 chr1 7906332 7906694 -274286970 + L1MB7 LINE L1 5796 6176 -2 2432 45 0 0 chr1 7906753 7907041 -274286623 - AluY SINE Alu -23 288 1 1843 126 11 0 chr1 7907063 7907326 -274286338 - AluSx SINE Alu -46 266 1 348 125 0 0 chr1 7907337 7907393 -274286271 + MER96B DNA MER1_type? 190 245 -172 2381 65 0 28 chr1 7907393 7907714 -274285950 - AluSx SINE Alu 0 312 1 2142 88 3 29 chr1 7907748 7908054 -274285610 - AluY SINE Alu -11 300 3 519 137 0 17 chr1 7908477 7908505 -274285159 - MER96B DNA MER1_type? -235 182 155 2349 84 0 7 chr1 7908505 7908815 -274284849 + AluSc SINE Alu 1 308 -1 519 137 0 17 chr1 7908815 7908903 -274284761 - MER96B DNA MER1_type? -262 155 68 297 164 33 0 chr1 7909106 7909167 -274284497 + MER45 DNA AcHobo 44 106 -72 233 175 0 0 chr1 7909161 7909201 -274284463 + MER45 DNA AcHobo 1542 1581 0 * 686 253 128 0 chr1 7910121 7910411 -274283253 + MER58B DNA MER1_type 6 341 0 2368 69 0 0 chr1 7911249 7911539 -274282125 + AluY SINE Alu 1 290 -21 2858 80 0 3 chr1 7911570 7911933 -274281731 + THE1B LTR MaLR 1 362 -2 577 316 54 24 chr1 7912186 7912521 -274281143 - L1ME4a LINE L1 -255 5866 5522 2272 100 0 0 chr1 7912538 7912837 -274280827 - AluSg SINE Alu -11 299 1 1597 130 8 8 chr1 7914229 7914502 -274279162 - AluJb SINE Alu 0 319 47 1926 151 3 0 chr1 7915232 7915530 -274278134 + AluJb SINE Alu 1 299 -13 880 117 0 0 chr1 7915530 7915650 -274278014 + AluJb SINE Alu 1 120 -192 255 213 0 0 chr1 7915668 7915743 -274277921 + A-rich Low_complexity Low_complexity 1 75 0 2382 77 3 0 chr1 7916156 7916455 -274277209 + AluSx SINE Alu 1 300 -12 2441 54 0 0 chr1 7916875 7917172 -274276492 + AluY SINE Alu 1 297 -14 964 196 6 0 chr1 7917309 7917482 -274276182 - AluJ SINE Alu -13 299 126 23 54 0 0 chr1 7917482 7917519 -274276145 + AT_rich Low_complexity Low_complexity 1 37 0 546 96 0 0 chr1 7917619 7917692 -274275972 - AluJ/FLAM SINE Alu -239 73 1 802 188 0 0 chr1 7918076 7918209 -274275455 - AluJ SINE Alu -169 133 1 1022 137 12 6 chr1 7918259 7918420 -274275244 + U1 snRNA snRNA 4 165 0 1637 114 84 4 chr1 7918459 7918732 -274274932 + AluSg SINE Alu 1 295 -15 1823 129 3 30 chr1 7919079 7919381 -274274283 + AluSx SINE Alu 1 294 -18 2279 99 0 0 chr1 7919383 7919685 -274273979 + AluY SINE Alu 3 304 -7 226 319 44 33 chr1 7920406 7920497 -274273167 - MIR3 SINE MIR -3 205 114 2212 109 6 6 chr1 7920544 7920856 -274272808 + AluSx SINE Alu 1 312 0 920 213 50 46 chr1 7921734 7921974 -274271690 + MIR SINE MIR 19 259 -3 405 288 110 0 chr1 7922051 7922169 -274271495 - L3 LINE CR1 -133 1444 1314 1711 183 0 7 chr1 7923563 7923863 -274269801 + AluJb SINE Alu 1 298 -14 2341 103 3 3 chr1 7924913 7925223 -274268441 - AluSq SINE Alu -3 310 1 261 327 242 0 chr1 7925236 7925401 -274268263 + MIR SINE MIR 57 261 -1 2333 70 0 17 chr1 7925601 7925888 -274267776 + AluY SINE Alu 22 303 -8 269 222 0 0 chr1 7926065 7926110 -274267554 - L2 LINE L2 -24 3289 3245 208 75 25 25 chr1 7926118 7926158 -274267506 + (GGA)n Simple_repeat Simple_repeat 3 42 0 2081 135 3 3 chr1 7926191 7926487 -274267177 - AluSx SINE Alu -16 296 1 543 202 90 106 chr1 7926487 7926675 -274266989 - MIR SINE MIR -16 246 62 292 299 19 9 chr1 7927008 7927115 -274266549 + L1MC4 LINE L1 7707 7814 -228 1510 156 89 7 chr1 7927115 7927397 -274266267 - AluJb SINE Alu -7 305 1 43 0 0 0 chr1 7927400 7927443 -274266221 + AT_rich Low_complexity Low_complexity 1 43 0 293 256 93 0 chr1 7927473 7927559 -274266105 + L1MC4 LINE L1 7806 7899 -143 1090 167 6 0 chr1 7927617 7927791 -274265873 + AluJb SINE Alu 136 310 -2 315 256 12 12 chr1 7927801 7927873 -274265791 + CT-rich Low_complexity Low_complexity 1 75 -11 1796 166 10 7 chr1 7927873 7928174 -274265490 - AluJb SINE Alu -6 306 5 315 256 12 12 chr1 7928174 7928187 -274265477 + CT-rich Low_complexity Low_complexity 74 86 0 302 229 0 16 chr1 7928193 7928254 -274265410 + L2 LINE L2 3254 3313 0 190 321 0 25 chr1 7928319 7928400 -274265264 + L2 LINE L2 2174 2252 -1062 2302 113 0 3 chr1 7928774 7929085 -274264579 - AluSg SINE Alu 0 310 1 231 36 0 0 chr1 7929085 7929113 -274264551 + (TTTA)n Simple_repeat Simple_repeat 3 30 0 2022 108 48 0 chr1 7929113 7929382 -274264282 - AluSx SINE Alu -30 282 1 991 101 8 0 chr1 7929385 7929514 -274264150 - AluSq/x SINE Alu -179 134 5 321 260 67 39 chr1 7930564 7930668 -274262996 - L3b LINE CR1 -190 1393 1287 2157 115 3 14 chr1 7931061 7931392 -274262272 - AluSx SINE Alu 0 312 3 21 0 0 0 chr1 7931399 7931420 -274262244 + AT_rich Low_complexity Low_complexity 1 21 0 2034 103 29 7 chr1 7931629 7931910 -274261754 - AluSx SINE Alu -14 298 12 2326 66 20 7 chr1 7932305 7932606 -274261058 - AluSq SINE Alu -8 305 1 2072 116 176 19 chr1 7932676 7932715 -274260949 - MSTA LTR MaLR 0 428 396 2197 126 10 0 chr1 7932715 7933024 -274260640 + AluSx SINE Alu 1 312 0 2072 116 176 19 chr1 7933024 7933354 -274260310 - MSTA LTR MaLR -32 396 1 225 0 0 0 chr1 7933646 7933671 -274259993 + (TTTA)n Simple_repeat Simple_repeat 2 26 0 710 187 0 0 chr1 7933674 7933781 -274259883 - AluJb SINE Alu -31 281 175 1840 131 28 21 chr1 7933820 7934140 -274259524 + AluJb SINE Alu 1 312 0 2140 98 7 17 chr1 7934150 7934460 -274259204 - AluSx SINE Alu 0 308 2 203 316 63 0 chr1 7935208 7935287 -274258377 + L2 LINE L2 3189 3272 0 1799 81 27 0 chr1 7935344 7935566 -274258098 - AluSx SINE Alu -84 228 1 872 124 0 0 chr1 7935695 7935808 -274257856 + AluSx SINE Alu 62 174 -138 1817 97 4 4 chr1 7935809 7936046 -274257618 - AluSc SINE Alu -72 237 1 788 193 60 0 chr1 7936055 7936221 -274257443 - MLT1C LTR MaLR -291 176 1 210 336 138 52 chr1 7936222 7936454 -274257210 + L2 LINE L2 3002 3253 -19 234 0 0 0 chr1 7936458 7936484 -274257180 + (CA)n Simple_repeat Simple_repeat 2 27 0 805 188 0 0 chr1 7936484 7936612 -274257052 - FLAM_C SINE Alu -5 128 1 2125 129 7 10 chr1 7936657 7936966 -274256698 + AluSx SINE Alu 3 310 -2 2179 112 7 0 chr1 7937170 7937456 -274256208 + AluSx SINE Alu 1 288 -24 297 0 0 0 chr1 7937468 7937501 -274256163 + (TG)n Simple_repeat Simple_repeat 2 34 0 418 370 24 6 chr1 7937634 7937799 -274255865 - MIR3 SINE MIR -9 199 32 270 246 0 0 chr1 7937908 7937973 -274255691 + MIR SINE MIR 34 98 -164 2323 104 0 0 chr1 7938061 7938360 -274255304 + AluSx SINE Alu 1 299 -13 297 75 0 0 chr1 7938487 7938527 -274255137 + (TG)n Simple_repeat Simple_repeat 2 41 0 1002 126 119 0 chr1 7938807 7938958 -274254706 + AluJb SINE Alu 137 305 -7 248 109 0 22 chr1 7938961 7939007 -274254657 + (GAA)n Simple_repeat Simple_repeat 1 45 0 2075 130 27 10 chr1 7939064 7939365 -274254299 - AluSq SINE Alu -7 306 1 2480 71 3 7 chr1 7939472 7939781 -274253883 - AluY SINE Alu 0 311 4 2351 83 3 7 chr1 7939817 7940119 -274253545 + AluY SINE Alu 1 301 -10 1618 184 3 44 chr1 7940135 7940430 -274253234 + AluJo SINE Alu 10 293 -19 444 37 0 0 chr1 7940430 7940484 -274253180 + (GGAA)n Simple_repeat Simple_repeat 2 55 0 1618 184 3 44 chr1 7940484 7940504 -274253160 + AluJo SINE Alu 293 312 0 349 245 47 19 chr1 7940551 7940657 -274253007 - L2 LINE L2 0 3313 3205 609 67 0 0 chr1 7940837 7940912 -274252752 + AluS SINE Alu 2 76 -236 2418 74 0 3 chr1 7940912 7941196 -274252468 + AluSq SINE Alu 15 297 -16 266 75 0 0 chr1 7941251 7941291 -274252373 + HY1 scRNA scRNA 72 111 -1 699 196 0 8 chr1 7941599 7941732 -274251932 + FLAM_C SINE Alu 2 133 -10 223 169 0 34 chr1 7941732 7941791 -274251873 + GA-rich Low_complexity Low_complexity 4 60 0 1994 127 7 13 chr1 7942977 7943284 -274250380 - AluJb SINE Alu -7 305 1 2552 58 0 0 chr1 7943441 7943736 -274249928 + AluY SINE Alu 1 295 -16 188 289 26 26 chr1 7943780 7943856 -274249808 + L2 LINE L2 2422 2497 -817 610 315 88 28 chr1 7943856 7944425 -274249239 + L2 LINE L2 2221 2823 -491 538 280 70 23 chr1 7944459 7944673 -274248991 + L2 LINE L2 3090 3313 0 2160 103 34 0 chr1 7944744 7945035 -274248629 + AluSg SINE Alu 1 301 -9 335 327 94 65 chr1 7945170 7945604 -274248060 + L2 LINE L2 2812 3258 -14 829 217 0 6 chr1 7945833 7945994 -274247670 + FRAM SINE Alu 1 160 -6 2146 91 30 27 chr1 7946047 7946460 -274247204 + AluSp SINE Alu 1 414 0 284 250 115 77 chr1 7946460 7946533 -274247131 + L1 LINE L1 4600 4669 -1477 2489 49 0 0 chr1 7946533 7946821 -274246843 + AluY SINE Alu 1 288 -23 180 0 0 0 chr1 7946821 7946841 -274246823 + (TA)n Simple_repeat Simple_repeat 2 21 0 284 250 115 77 chr1 7946841 7946922 -274246742 + L1 LINE L1 4668 4761 -1385 2427 89 0 16 chr1 7946922 7947238 -274246426 + AluSq SINE Alu 1 311 -2 411 217 3 44 chr1 7947287 7947437 -274246227 + L1ME4a LINE L1 5201 5339 -807 1829 113 19 12 chr1 7947438 7947694 -274245970 + AluSp SINE Alu 39 296 -17 2361 139 86 8 chr1 7947699 7948094 -274245570 + MSTB LTR MaLR 1 426 0 435 219 34 25 chr1 7948108 7948227 -274245437 - MIR SINE MIR -28 234 115 772 237 21 5 chr1 7948232 7948426 -274245238 + MER58A DNA MER1_type 1 197 -27 453 184 13 133 chr1 7948429 7948500 -274245164 - MER45A DNA AcHobo -1407 174 131 2028 116 56 0 chr1 7948500 7948784 -274244880 + AluSx SINE Alu 1 300 -12 453 184 13 133 chr1 7948784 7948870 -274244794 - MER45A DNA AcHobo -1450 131 36 221 330 42 4 chr1 7948943 7949041 -274244623 - MIR SINE MIR -94 114 13 282 349 8 0 chr1 7949059 7949185 -274244479 + L1ME4a LINE L1 5486 5612 -509 353 258 118 45 chr1 7949194 7949415 -274244249 + L1ME4a LINE L1 5827 6063 -58 1749 159 25 11 chr1 7949631 7949914 -274243750 + AluJb SINE Alu 10 296 -16 368 264 203 11 chr1 7949992 7950174 -274243490 + MER115 DNA AcHobo 23 239 -454 3227 125 97 22 chr1 7950356 7950933 -274242731 - LTR29 LTR ERV1 0 622 3 243 213 85 43 chr1 7950950 7951044 -274242620 + Zaphod DNA AcHobo 3915 4012 -19 2244 109 3 34 chr1 7951178 7951499 -274242165 - AluSx SINE Alu -1 311 1 1602 157 4 15 chr1 7951499 7951760 -274241904 - AluJo SINE Alu -16 296 39 2286 110 3 19 chr1 7951934 7952251 -274241413 + AluSx SINE Alu 1 312 0 1739 175 23 16 chr1 7952338 7952641 -274241023 - AluJb SINE Alu -7 305 1 2178 119 3 3 chr1 7953050 7953352 -274240312 - AluSx SINE Alu -10 302 1 2116 108 0 63 chr1 7953558 7953891 -274239773 + AluSx SINE Alu 1 312 0 2132 177 16 26 chr1 7954095 7954446 -274239218 - L1MB7 LINE L1 -9 6175 5827 2287 114 3 0 chr1 7954446 7954754 -274238910 - AluSx SINE Alu -3 309 1 2132 177 16 26 chr1 7954754 7954832 -274238832 - L1MB7 LINE L1 -357 5827 5750 2256 103 17 7 chr1 7954892 7955194 -274238470 - AluSg SINE Alu -5 305 1 2130 99 23 26 chr1 7955195 7955497 -274238167 - AluSx SINE Alu -11 301 1 2250 121 7 0 chr1 7955649 7955954 -274237710 - AluSp SINE Alu -6 307 1 548 288 142 14 chr1 7956012 7956177 -274237487 - L1ME3 LINE L1 -218 5944 5801 1070 214 28 0 chr1 7956177 7956392 -274237272 - MER58A DNA MER1_type 0 224 4 548 288 142 14 chr1 7956392 7956771 -274236893 - L1ME3 LINE L1 -361 5801 5323 2024 121 0 17 chr1 7956771 7957060 -274236604 - AluSx SINE Alu -4 308 25 1646 54 0 0 chr1 7957060 7957244 -274236420 - AluY SINE Alu -126 185 1 420 149 0 64 chr1 7957270 7957364 -274236300 + AluJ/FRAM SINE Alu 218 305 -7 24 0 0 0 chr1 7957364 7957388 -274236276 + AT_rich Low_complexity Low_complexity 1 24 0 31 26 0 0 chr1 7957401 7957439 -274236225 + AT_rich Low_complexity Low_complexity 1 38 0 216 0 0 0 chr1 7957700 7957724 -274235940 + (TAAA)n Simple_repeat Simple_repeat 1 24 0 311 256 33 0 chr1 7957752 7957842 -274235822 - L1ME LINE L1 -297 5824 5732 2229 112 0 7 chr1 7957887 7958192 -274235472 - AluSg SINE Alu -7 303 1 1071 68 8 0 chr1 7958199 7958331 -274235333 - AluSq/x SINE Alu -180 133 1 2604 65 3 0 chr1 7959027 7959336 -274234328 + AluY SINE Alu 1 310 -1 2651 64 0 0 chr1 7959339 7959650 -274234014 + AluY SINE Alu 1 311 0 2097 139 0 10 chr1 7959662 7959971 -274233693 + AluSx SINE Alu 1 306 -6 323 197 15 0 chr1 7960027 7960093 -274233571 - AluJ/FLAM SINE Alu -228 74 8 2071 106 7 0 chr1 7960142 7960425 -274233239 + AluY SINE Alu 18 302 -9 383 158 267 10 chr1 7960653 7960754 -274232910 + FLAM_C SINE Alu 5 131 -2 572 163 0 0 chr1 7960980 7961066 -274232598 + AluS SINE Alu 7 92 -221 1683 124 116 0 chr1 7961086 7961344 -274232320 + AluSx SINE Alu 21 308 -4 969 129 0 0 chr1 7962508 7962647 -274231017 + AluJb SINE Alu 1 139 -173 2135 112 0 7 chr1 7962861 7963147 -274230517 - AluSq SINE Alu -29 284 1 1802 155 3 14 chr1 7963398 7963695 -274229969 + AluJo SINE Alu 5 298 -14 1401 201 123 4 chr1 7963698 7963967 -274229697 + AluJo SINE Alu 1 301 -1 331 111 0 0 chr1 7963967 7964012 -274229652 + (GA)n Simple_repeat Simple_repeat 1 45 0 584 171 0 8 chr1 7964015 7964132 -274229532 + GA-rich Low_complexity Low_complexity 1 116 0 387 367 137 5 chr1 7964146 7964563 -274229101 + L2 LINE L2 2173 2644 -670 2284 100 0 0 chr1 7964571 7964887 -274228777 - AluSx SINE Alu 0 317 2 445 284 42 64 chr1 7964979 7965215 -274228449 + L2 LINE L2 3078 3308 -5 1886 124 11 11 chr1 7965721 7965995 -274227669 + AluSq SINE Alu 2 275 -38 778 125 191 0 chr1 7965996 7966132 -274227532 + AluSp SINE Alu 137 298 -15 2509 76 3 0 chr1 7966273 7966576 -274227088 + AluSp SINE Alu 2 305 -8 405 58 0 0 chr1 7966576 7966628 -274227036 + (TA)n Simple_repeat Simple_repeat 2 53 0 316 143 29 0 chr1 7966669 7966739 -274226925 + (CATATA)n Simple_repeat Simple_repeat 4 75 0 293 86 0 0 chr1 7966741 7966799 -274226865 + LTR66 LTR ERVL 394 451 -159 2295 84 3 0 chr1 7967018 7967337 -274226327 + AluSp SINE Alu 1 320 0 868 121 35 7 chr1 7967358 7967499 -274226165 + L1MA5 LINE L1 6154 6298 -2 326 298 23 46 chr1 7967550 7967681 -274225983 + MIR SINE MIR 134 261 -1 254 146 0 18 chr1 7968021 7968076 -274225588 + (TCC)n Simple_repeat Simple_repeat 3 56 0 253 299 11 11 chr1 7968446 7968533 -274225131 - LTR67 LTR ERVL -3 554 468 343 228 40 101 chr1 7968607 7968719 -274224945 + L1MD2 LINE L1 6210 6312 -47 2267 111 3 0 chr1 7968719 7969025 -274224639 - AluSx SINE Alu -5 307 1 343 228 40 101 chr1 7969025 7969061 -274224603 + L1MD2 LINE L1 6312 6349 -10 2145 106 6 38 chr1 7969391 7969711 -274223953 + AluSg SINE Alu 1 310 0 2382 88 10 0 chr1 7970321 7970615 -274223049 - AluSp SINE Alu -16 297 1 2368 91 27 0 chr1 7970919 7971216 -274222448 - AluSq SINE Alu -3 310 6 816 85 24 30 chr1 7971222 7971386 -274222278 + (TTTC)n Simple_repeat Simple_repeat 1 163 0 468 0 0 0 chr1 7971384 7971436 -274222228 + (TCCC)n Simple_repeat Simple_repeat 1 52 0 * 1965 113 0 18 chr1 7971436 7971788 -274221876 - AluSx SINE Alu 0 359 13 592 317 86 46 chr1 7971862 7972316 -274221348 + L2 LINE L2 2842 3313 0 2641 108 8 3 chr1 7972376 7972738 -274220926 - THE1B LTR MaLR 0 364 1 425 163 47 46 chr1 7973686 7973801 -274219863 + MER34 LTR ERV1 431 536 -6 231 40 0 140 chr1 7973809 7973859 -274219805 + MLT1D LTR MaLR 245 287 -218 2284 94 0 10 chr1 7973886 7974174 -274219490 - AluSq SINE Alu -28 285 1 871 57 0 5 chr1 7974271 7974401 -274219263 + MER30 DNA MER1_type 1 126 -104 271 0 0 0 chr1 7974404 7974434 -274219230 + (TTTG)n Simple_repeat Simple_repeat 3 52 0 2272 76 4 0 chr1 7974434 7974711 -274218953 - AluSx SINE Alu -31 281 5 444 198 47 38 chr1 7974734 7974840 -274218824 + L2 LINE L2 3166 3272 0 1994 123 45 3 chr1 7975471 7975763 -274217901 - AluSg SINE Alu -6 304 1 985 246 38 102 chr1 7975948 7976050 -274217614 - MER34 LTR ERV1 0 542 435 2205 135 0 3 chr1 7976050 7976354 -274217310 - AluSx SINE Alu -9 303 1 985 246 38 102 chr1 7976354 7976803 -274216861 - MER34 LTR ERV1 -107 435 27 2250 98 3 35 chr1 7976803 7977120 -274216544 - AluSx SINE Alu -5 307 1 985 246 38 102 chr1 7977120 7977144 -274216520 - MER34 LTR ERV1 -515 27 3 1762 100 10 46 chr1 7977171 7977578 -274216086 - MER1B DNA MER1_type 0 339 1 2293 108 3 25 chr1 7977920 7978235 -274215429 + AluSp SINE Alu 1 308 -5 2170 117 3 0 chr1 7978254 7978544 -274215120 + AluSx SINE Alu 5 295 -17 1575 155 68 0 chr1 7978916 7979215 -274214449 + AluJo SINE Alu 1 317 0 2307 128 0 0 chr1 7979536 7979841 -274213823 - AluJo SINE Alu -7 305 1 1957 127 37 10 chr1 7980185 7980520 -274213144 - AluSx SINE Alu 0 343 1 26 0 0 0 chr1 7980841 7980867 -274212797 + AT_rich Low_complexity Low_complexity 1 26 0 307 299 26 0 chr1 7980875 7980952 -274212712 - L1MC4 LINE L1 -1350 6692 6614 857 137 0 0 chr1 7980980 7981097 -274212567 - FLAM_C SINE Alu -26 117 1 210 91 0 0 chr1 7981125 7981158 -274212506 + (TG)n Simple_repeat Simple_repeat 2 34 0 1010 179 6 0 chr1 7981203 7981365 -274212299 + AluJb SINE Alu 136 298 -14 428 231 27 34 chr1 7982070 7982217 -274211447 + AluYa5 SINE Alu 164 309 -2 555 174 93 41 chr1 7982218 7982390 -274211274 - MER96B DNA MER1_type? -236 181 1 869 189 13 0 chr1 7982419 7982572 -274211092 - AluJb SINE Alu -21 291 137 24 96 0 0 chr1 7983000 7983073 -274210591 + GC_rich Low_complexity Low_complexity 1 73 0 826 124 0 0 chr1 7983586 7983699 -274209965 + AluJb SINE Alu 196 308 -4 2137 105 54 0 chr1 7983707 7984001 -274209663 + AluSg SINE Alu 1 310 0 737 254 21 25 chr1 7984137 7984373 -274209291 - L1MC4 LINE L1 0 8042 7808 204 68 0 102 chr1 7984466 7984525 -274209139 + (TCTCTG)n Simple_repeat Simple_repeat 3 55 0 34 0 0 0 chr1 7985184 7985218 -274208446 + AT_rich Low_complexity Low_complexity 1 34 0 449 95 60 0 chr1 7985218 7985302 -274208362 - L1PB1 LINE L1 0 6151 6063 256 260 8 98 chr1 7985446 7985580 -274208084 - MER5A DNA MER1_type 0 189 54 307 222 40 95 chr1 7985773 7985899 -274207765 - L1ME LINE L1 -466 5655 5537 2316 92 0 0 chr1 7985992 7986304 -274207360 + AluSx SINE Alu 1 312 0 509 325 124 0 chr1 7986387 7986581 -274207083 + MIR SINE MIR 26 243 -19 405 300 19 25 chr1 7986937 7987097 -274206567 + MIR SINE MIR 34 192 -70 207 344 78 19 chr1 7987196 7987350 -274206314 + L2 LINE L2 2578 2740 -574 1101 73 0 7 chr1 7988732 7988869 -274204795 - AluSp/q SINE Alu -15 298 163 331 316 18 18 chr1 7989205 7989319 -274204345 + MIR SINE MIR 109 222 -40 2096 113 10 3 chr1 7989331 7989622 -274204042 - AluSg SINE Alu -17 293 1 1844 171 3 22 chr1 7990028 7990343 -274203321 + AluJb SINE Alu 1 309 -3 211 205 0 0 chr1 7990493 7990532 -274203132 + CT-rich Low_complexity Low_complexity 3 41 0 729 176 0 29 chr1 7990532 7990668 -274202996 - AluJb SINE Alu -179 133 2 532 238 6 70 chr1 7990750 7990851 -274202813 + MER45 DNA AcHobo 4 91 -862 2241 96 7 0 chr1 7990851 7991142 -274202522 - AluSx SINE Alu -19 293 1 532 238 6 70 chr1 7991142 7991212 -274202452 + MER45 DNA AcHobo 91 164 -789 450 248 255 0 chr1 7991333 7991486 -274202178 + MER45C DNA AcHobo 762 953 0 202 354 31 42 chr1 7991702 7991798 -274201866 + MIR3 SINE MIR 106 200 -8 1918 160 10 0 chr1 7991921 7992215 -274201449 + AluJo SINE Alu 1 297 -15 2518 93 0 0 chr1 7992495 7992808 -274200856 + AluSq SINE Alu 1 313 0 2142 130 0 3 chr1 7992944 7993236 -274200428 - AluSx SINE Alu -21 291 1 742 188 0 0 chr1 7993620 7993753 -274199911 - FLAM_C SINE Alu 0 133 1 935 137 12 6 chr1 7993803 7993964 -274199700 + U1 snRNA snRNA 4 165 0 1728 114 84 4 chr1 7994003 7994276 -274199388 + AluSg SINE Alu 1 295 -15 1913 129 3 30 chr1 7994623 7994925 -274198739 + AluSx SINE Alu 1 294 -18 2388 99 0 0 chr1 7994927 7995229 -274198435 + AluY SINE Alu 3 304 -7 225 319 44 33 chr1 7995950 7996041 -274197623 - MIR3 SINE MIR -3 205 114 2320 109 6 6 chr1 7996088 7996400 -274197264 + AluSx SINE Alu 1 312 0 884 208 50 46 chr1 7997278 7997518 -274196146 + MIR SINE MIR 19 259 -3 378 288 110 0 chr1 7997595 7997713 -274195951 - L3 LINE CR1 -133 1444 1314 1775 183 0 7 chr1 7999107 7999407 -274194257 + AluJb SINE Alu 1 298 -14 2353 103 3 3 chr1 8000457 8000767 -274192897 - AluSq SINE Alu -3 310 1 233 279 165 0 chr1 8000780 8000859 -274192805 + MIR SINE MIR 57 148 -114 2340 70 0 17 chr1 8001146 8001433 -274192231 + AluY SINE Alu 22 303 -8 255 245 0 0 chr1 8001606 8001655 -274192009 - L2 LINE L2 -20 3293 3245 208 75 25 25 chr1 8001663 8001703 -274191961 + (GGA)n Simple_repeat Simple_repeat 3 42 0 2089 135 3 3 chr1 8001736 8002032 -274191632 - AluSx SINE Alu -16 296 1 511 223 85 101 chr1 8002032 8002220 -274191444 - MIR SINE MIR -16 246 62 300 306 25 13 chr1 8002515 8002660 -274191004 + L1MC4 LINE L1 7573 7814 -95 1517 156 89 7 chr1 8002660 8002942 -274190722 - AluJb SINE Alu -7 305 1 43 0 0 0 chr1 8002945 8002988 -274190676 + AT_rich Low_complexity Low_complexity 1 43 0 302 256 93 0 chr1 8003018 8003104 -274190560 + L1MC4 LINE L1 7806 7899 -143 1096 167 6 0 chr1 8003162 8003336 -274190328 + AluJb SINE Alu 136 310 -2 315 256 12 12 chr1 8003346 8003418 -274190246 + CT-rich Low_complexity Low_complexity 1 75 -11 1806 166 10 7 chr1 8003418 8003719 -274189945 - AluJb SINE Alu -6 306 5 315 256 12 12 chr1 8003719 8003732 -274189932 + CT-rich Low_complexity Low_complexity 74 86 0 286 229 0 16 chr1 8003738 8003799 -274189865 + L2 LINE L2 3254 3313 0 181 321 0 25 chr1 8003864 8003945 -274189719 + L2 LINE L2 2174 2252 -1062 2304 113 0 3 chr1 8004301 8004630 -274189034 - AluSg SINE Alu 0 328 1 1966 129 50 4 chr1 8004648 8004928 -274188736 - AluSq SINE Alu -20 293 1 695 183 0 0 chr1 8005626 8005741 -274187923 + AluJo SINE Alu 1 115 -187 2759 72 3 8 chr1 8005741 8006113 -274187551 - THE1C LTR MaLR -4 371 1 1057 174 10 20 chr1 8006113 8006309 -274187355 + AluJo SINE Alu 106 299 -13 856 202 39 6 chr1 8006413 8006591 -274187073 - MIR SINE MIR -60 202 19 1242 185 14 14 chr1 8006921 8007143 -274186521 + AluJb SINE Alu 81 302 -10 1678 172 0 47 chr1 8007581 8007900 -274185764 + AluJb SINE Alu 1 304 -8 1550 121 3 121 chr1 8008059 8008239 -274185425 - AluSc SINE Alu -17 292 167 243 0 0 0 chr1 8008239 8008266 -274185398 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 1550 121 3 121 chr1 8008266 8008416 -274185248 - AluSc SINE Alu -142 167 1 281 122 20 0 chr1 8008418 8008467 -274185197 - AluSg/x SINE Alu -170 130 81 279 211 26 0 chr1 8008571 8008647 -274185017 + (CAAT)n Simple_repeat Simple_repeat 1 78 0 305 263 7 0 chr1 8008655 8008792 -274184872 + (TCCA)n Simple_repeat Simple_repeat 4 141 0 1011 152 0 0 chr1 8008817 8008995 -274184669 + (TCCA)n Simple_repeat Simple_repeat 1 178 0 374 260 0 17 chr1 8009014 8009191 -274184473 + (TCCA)n Simple_repeat Simple_repeat 3 176 0 210 318 0 0 chr1 8009192 8009255 -274184409 + (CCCA)n Simple_repeat Simple_repeat 4 66 0 378 0 0 0 chr1 8010144 8010186 -274183478 + (TG)n Simple_repeat Simple_repeat 2 43 0 273 118 0 0 chr1 8010186 8010237 -274183427 + (GA)n Simple_repeat Simple_repeat 2 52 0 1858 132 18 14 chr1 8010238 8010518 -274183146 - AluJb SINE Alu -31 281 1 2296 80 0 7 chr1 8010861 8011169 -274182495 + AluSx SINE Alu 1 306 0 2445 87 3 0 chr1 8011580 8011880 -274181784 - AluSx SINE Alu -11 301 1 22 35 0 0 chr1 8012614 8012643 -274181021 + GC_rich Low_complexity Low_complexity 1 29 0 247 51 0 0 chr1 8013000 8013039 -274180625 + ORSL DNA AcHobo 171 209 -66 261 291 164 0 chr1 8013154 8013264 -274180400 - L2 LINE L2 -34 3279 3152 693 85 94 0 chr1 8013295 8013401 -274180263 - FLAM_C SINE Alu -16 117 2 322 315 44 64 chr1 8013407 8013595 -274180069 - L2 LINE L2 -114 3199 3020 2161 110 14 3 chr1 8013595 8013887 -274179777 + AluSx SINE Alu 1 295 -17 322 315 44 64 chr1 8013887 8014041 -274179623 - L2 LINE L2 -293 3020 2864 261 256 141 16 chr1 8015032 8015153 -274178511 - MLT1J2 LTR MaLR -46 404 269 1733 167 30 17 chr1 8017075 8017374 -274176290 + AluJb SINE Alu 1 303 -9 219 304 0 0 chr1 8017486 8017611 -274176053 + (CA)n Simple_repeat Simple_repeat 1 125 0 464 161 21 0 chr1 8018270 8018363 -274175301 - MER53 DNA DNA -2 187 93 246 278 53 53 chr1 8018777 8018986 -274174678 - L1ME3A LINE L1 0 6170 5962 378 233 273 7 chr1 8019020 8019170 -274174494 - LTR16C LTR ERVL 0 491 302 1705 161 7 20 chr1 8019173 8019478 -274174186 - MLT1A1 LTR MaLR -64 301 1 261 286 122 0 chr1 8019478 8019576 -274174088 - LTR16C LTR ERVL -222 269 160 967 170 29 164 chr1 8019597 8019817 -274173847 - MLT1B LTR MaLR 0 390 201 280 143 0 0 chr1 8019838 8019887 -274173777 - Alu SINE Alu 0 300 252 1697 245 70 38 chr1 8020043 8020468 -274173196 - L1ME3A LINE L1 -239 5931 5476 2089 123 19 23 chr1 8020468 8020778 -274172886 - AluSq SINE Alu -4 309 1 1697 245 70 38 chr1 8020778 8021009 -274172655 - L1ME3A LINE L1 -694 5476 5254 180 0 0 0 chr1 8021023 8021043 -274172621 + (T)n Simple_repeat Simple_repeat 1 20 0 332 279 88 0 chr1 8021080 8021227 -274172437 + L1M4 LINE L1 5006 5165 -981 1996 153 0 7 chr1 8021234 8021528 -274172136 + AluJb SINE Alu 1 292 -20 265 263 61 18 chr1 8021547 8021661 -274172003 - L1ME3A LINE L1 -1568 4578 4460 1442 85 0 20 chr1 8021675 8021874 -274171790 + AluSg/x SINE Alu 117 311 -1 726 263 29 55 chr1 8021876 8022235 -274171429 - L1ME3A LINE L1 -2338 3808 3439 405 58 0 0 chr1 8022235 8022287 -274171377 + (TTCC)n Simple_repeat Simple_repeat 3 54 0 971 163 218 28 chr1 8022287 8022539 -274171125 - AluSg SINE Alu 0 300 1 1619 112 166 87 chr1 8022671 8022889 -274170775 + MLT1B LTR MaLR 1 200 -190 1860 151 131 13 chr1 8022889 8023272 -274170392 + MSTA LTR MaLR 1 428 0 1619 112 166 87 chr1 8023272 8023330 -274170334 + MLT1B LTR MaLR 200 252 -138 639 151 109 0 chr1 8023330 8023449 -274170215 + FLAM_C SINE Alu 1 132 -1 1619 112 166 87 chr1 8023449 8023527 -274170137 + MLT1B LTR MaLR 252 384 -6 444 223 28 97 chr1 8023574 8023636 -274170028 - L1ME3A LINE L1 -2885 3261 3196 2339 125 0 0 chr1 8023636 8023947 -274169717 + AluSx SINE Alu 1 311 -1 444 223 28 97 chr1 8023947 8024131 -274169533 - L1ME3A LINE L1 -2950 3196 3032 2147 144 0 3 chr1 8024131 8024444 -274169220 - AluJb SINE Alu 0 312 1 2085 121 7 0 chr1 8024467 8024777 -274168887 - AluSx SINE Alu -5 307 1 338 255 47 0 chr1 8024779 8024885 -274168779 - L1ME3A LINE L1 -3113 3033 2923 274 206 21 184 chr1 8025115 8025185 -274168479 + L2 LINE L2 2245 2325 -989 2095 114 3 0 chr1 8025185 8025503 -274168161 - AluSp SINE Alu 0 313 1 274 206 21 184 chr1 8025503 8025517 -274168147 + L2 LINE L2 2325 2340 -974 1963 130 3 3 chr1 8025517 8025816 -274167848 - AluSx SINE Alu -13 299 1 274 206 21 184 chr1 8025816 8025871 -274167793 + L2 LINE L2 2340 2362 -952 805 160 77 50 chr1 8025871 8026052 -274167612 + AluJo SINE Alu 1 186 -126 1748 148 7 10 chr1 8026158 8026463 -274167201 + AluSx SINE Alu 1 304 -8 1006 139 0 0 chr1 8026463 8026637 -274167027 + AluSg/x SINE Alu 134 307 0 342 0 0 0 chr1 8026981 8027019 -274166645 + (TTTG)n Simple_repeat Simple_repeat 1 38 0 1993 98 0 4 chr1 8027023 8027299 -274166365 - AluSx SINE Alu -37 275 1 431 186 10 49 chr1 8027299 8027401 -274166263 - MER39 LTR ERV1 -609 98 1 352 338 1 23 chr1 8030349 8030482 -274163182 - MIR3 SINE MIR -51 157 42 2111 124 0 0 chr1 8030865 8031164 -274162500 + AluSq SINE Alu 1 299 -14 2249 95 0 0 chr1 8031505 8031800 -274161864 + AluSx SINE Alu 1 295 -17 297 0 0 0 chr1 8031800 8031833 -274161831 + (TA)n Simple_repeat Simple_repeat 1 33 0 2226 97 0 0 chr1 8032102 8032401 -274161263 - AluSq SINE Alu -9 304 6 36 23 0 0 chr1 8032574 8032617 -274161047 + AT_rich Low_complexity Low_complexity 1 43 0 1852 145 3 13 chr1 8032919 8033223 -274160441 + AluJb SINE Alu 1 301 -11 499 251 46 27 chr1 8033337 8033595 -274160069 + MLT1J2 LTR MaLR 34 329 -121 252 275 50 38 chr1 8033737 8033817 -274159847 - L3 LINE CR1 -958 619 539 4113 133 31 2 chr1 8033966 8034583 -274159081 + MER41B LTR ERV1 1 635 0 1174 113 0 0 chr1 8035062 8035230 -274158434 + AluSq SINE Alu 140 307 -6 1960 128 0 39 chr1 8036783 8037089 -274156575 - AluJo SINE Alu -18 294 1 373 317 7 7 chr1 8037284 8037426 -274156238 - L1M4 LINE L1 -3329 2817 2676 2097 108 0 10 chr1 8037913 8038218 -274155446 + AluSx SINE Alu 1 302 -10 1877 123 0 3 chr1 8038218 8038502 -274155162 + AluY SINE Alu 1 284 -27 531 218 0 0 chr1 8038618 8038719 -274154945 + U6 snRNA snRNA 1 101 -6 253 230 159 0 chr1 8038959 8039085 -274154579 + L1M4 LINE L1 2897 3042 -3104 644 302 115 75 chr1 8039093 8039188 -274154476 + L1M4 LINE L1 3214 3304 -2842 2170 107 0 0 chr1 8039188 8039488 -274154176 + AluSg SINE Alu 9 308 -2 2023 117 0 29 chr1 8039491 8039798 -274153866 + AluSx SINE Alu 1 298 -14 644 302 115 75 chr1 8039798 8040114 -274153550 + L1M4 LINE L1 3305 3659 -2487 2086 106 13 3 chr1 8040114 8040416 -274153248 + AluSg SINE Alu 1 305 -5 644 302 115 75 chr1 8040416 8040546 -274153118 + L1M4 LINE L1 3659 3782 -2364 1711 165 10 3 chr1 8040617 8040908 -274152756 - AluJb SINE Alu -19 293 1 512 201 120 37 chr1 8040908 8040942 -274152722 + L1M4 LINE L1 4386 4416 -1730 1958 133 3 3 chr1 8040942 8041251 -274152413 + AluSx SINE Alu 1 309 -3 512 201 120 37 chr1 8041251 8041438 -274152226 + L1M4 LINE L1 4416 4610 -1536 521 95 0 0 chr1 8041476 8041550 -274152114 + AluSp/q SINE Alu 231 304 -9 295 188 24 35 chr1 8041552 8041637 -274152027 + L1M4 LINE L1 4638 4721 -1425 354 295 33 0 chr1 8041646 8041768 -274151896 - L1MC/D LINE L1 -2053 5755 5630 336 283 65 7 chr1 8041759 8041897 -274151767 - L1MC/D LINE L1 -2401 5407 5262 * 506 127 0 0 chr1 8041900 8041979 -274151685 - MER116 DNA Mariner -1 79 1 1948 131 3 0 chr1 8042032 8042322 -274151342 - AluSx SINE Alu -21 291 1 236 285 118 82 chr1 8042322 8042513 -274151151 - L1MC/D LINE L1 -981 5165 4982 2106 102 7 0 chr1 8042513 8042807 -274150857 + AluSc SINE Alu 3 298 -11 236 285 118 82 chr1 8042807 8042996 -274150668 - L1MC/D LINE L1 -1164 4982 4801 1600 172 10 7 chr1 8042996 8043298 -274150366 - AluJb SINE Alu -9 303 1 236 285 118 82 chr1 8043298 8043474 -274150190 - L1MC/D LINE L1 -1345 4801 4588 314 261 71 43 chr1 8043500 8043919 -274149745 - L1MC/D LINE L1 -2695 3451 2933 2255 113 0 0 chr1 8043919 8044228 -274149436 - AluSg SINE Alu -1 309 1 314 261 71 43 chr1 8044228 8044373 -274149291 - L1MC/D LINE L1 -3213 2933 2793 288 268 134 39 chr1 8044373 8044500 -274149164 - MIR3 SINE MIR -67 141 3 21 0 0 0 chr1 8044600 8044621 -274149043 + AT_rich Low_complexity Low_complexity 1 21 0 2273 94 0 0 chr1 8045082 8045380 -274148284 + AluSx SINE Alu 1 298 -14 224 266 55 37 chr1 8047145 8047254 -274146410 + L2 LINE L2 1301 1411 -1903 319 282 148 52 chr1 8047495 8047920 -274145744 + MLT1J LTR MaLR 1 466 -45 3028 137 20 29 chr1 8047966 8048051 -274145613 + L1MA8 LINE L1 5539 5623 -677 2321 91 51 46 chr1 8048051 8048424 -274145240 - THE1C LTR MaLR 0 375 1 3028 137 20 29 chr1 8048424 8048837 -274144827 + L1MA8 LINE L1 5623 6002 -298 654 206 8 8 chr1 8048837 8048968 -274144696 + FLAM_A SINE Alu 2 132 -1 3028 137 20 29 chr1 8048968 8049075 -274144589 + L1MA8 LINE L1 6002 6108 -192 1002 176 16 27 chr1 8049101 8049155 -274144509 - AluSx SINE Alu -126 186 133 2067 98 3 33 chr1 8049155 8049462 -274144202 - AluSg1 SINE Alu -11 298 1 1002 176 16 27 chr1 8049462 8049595 -274144069 - AluSx SINE Alu -179 133 1 1599 126 0 41 chr1 8049628 8049949 -274143715 + AluSx SINE Alu 1 309 0 448 100 0 0 chr1 8049949 8050009 -274143655 + Alu SINE Alu 230 289 -21 1265 134 0 5 chr1 8050026 8050236 -274143428 - AluSg/x SINE Alu 0 306 98 1631 142 3 42 chr1 8050359 8050648 -274143016 + AluJb SINE Alu 5 282 -30 785 183 0 0 chr1 8050665 8050791 -274142873 - FLAM_C SINE Alu -3 130 5 252 0 0 0 chr1 8050808 8050836 -274142828 + (TAAA)n Simple_repeat Simple_repeat 1 28 0 204 311 20 66 chr1 8050838 8050989 -274142675 - L3b LINE CR1 -258 1325 1182 233 0 62 0 chr1 8051257 8051289 -274142375 + (TTTA)n Simple_repeat Simple_repeat 3 36 0 1899 133 0 3 chr1 8051293 8051578 -274142086 - AluSg SINE Alu -26 284 1 2102 107 0 0 chr1 8051602 8051891 -274141773 - AluSx SINE Alu -17 295 7 1994 112 3 23 chr1 8051943 8052272 -274141392 + AluSq SINE Alu 1 313 0 1306 74 0 0 chr1 8052272 8052434 -274141230 + AluSg/x SINE Alu 134 295 -17 1523 164 0 48 chr1 8052593 8052903 -274140761 - AluJb SINE Alu -8 304 10 1119 176 27 27 chr1 8053350 8053572 -274140092 - AluJb SINE Alu -10 302 81 896 202 39 6 chr1 8053902 8054080 -274139584 + MIR SINE MIR 19 202 -60 959 174 10 20 chr1 8054184 8054380 -274139284 - AluJo SINE Alu -13 299 106 2903 72 3 8 chr1 8054380 8054753 -274138911 + THE1C LTR MaLR 1 371 -4 723 183 0 0 chr1 8054753 8054867 -274138797 - AluJo SINE Alu -187 115 1 2134 122 3 3 chr1 8055565 8055877 -274137787 + AluSq SINE Alu 1 312 -1 613 237 34 31 chr1 8056014 8056223 -274137441 - MIR SINE MIR -49 213 7 2341 74 0 0 chr1 8056271 8056569 -274137095 - AluSq SINE Alu -15 298 1 322 282 237 1 chr1 8057367 8057555 -274136109 - MIR SINE MIR -11 251 23 460 278 92 21 chr1 8057891 8058146 -274135518 + L1M4 LINE L1 2229 2507 -3639 2010 98 0 80 chr1 8058146 8058471 -274135193 + AluSx SINE Alu 1 299 -13 460 278 92 21 chr1 8058471 8058499 -274135165 + L1M4 LINE L1 2507 2532 -3614 438 125 0 9 chr1 8058549 8058812 -274134852 + AluSq SINE Alu 1 309 -4 347 309 31 24 chr1 8058815 8058892 -274134772 + L1M4 LINE L1 2609 2684 -3462 2164 103 0 0 chr1 8058892 8059193 -274134471 - AluSg SINE Alu -9 301 1 347 309 31 24 chr1 8059193 8059403 -274134261 + L1M4 LINE L1 2684 2898 -3248 23 0 0 0 chr1 8059430 8059453 -274134211 + AT_rich Low_complexity Low_complexity 1 23 0 1317 290 79 16 chr1 8059480 8060274 -274133390 + L1M4 LINE L1 3002 3845 -2301 778 218 58 180 chr1 8060304 8061044 -274132620 + MER21B LTR ERV1 13 733 -198 470 255 69 71 chr1 8061131 8061289 -274132375 + L1M4 LINE L1 3890 4047 -2099 2027 127 3 3 chr1 8061289 8061597 -274132067 - AluSq SINE Alu -5 308 1 470 255 69 71 chr1 8061597 8061917 -274131747 + L1M4 LINE L1 4047 4367 -1779 2152 92 3 3 chr1 8062041 8062335 -274131329 - AluSg SINE Alu -16 294 1 1920 98 63 3 chr1 8062337 8062622 -274131042 - AluSg SINE Alu -8 302 1 839 156 38 44 chr1 8062690 8062850 -274130814 + AluJb SINE Alu 137 295 -17 1326 203 48 29 chr1 8062855 8063165 -274130499 + L1ME2 LINE L1 5727 6042 -122 1623 161 10 30 chr1 8063165 8063464 -274130200 - AluJb SINE Alu -19 293 1 1937 110 18 4 chr1 8063482 8063763 -274129901 - AluSg SINE Alu -25 285 1 364 221 11 0 chr1 8063782 8063877 -274129787 + L1MA10 LINE L1 6225 6320 -14 1493 153 38 24 chr1 8063955 8064243 -274129421 - AluJo SINE Alu -9 303 12 1398 111 0 0 chr1 8064260 8064450 -274129214 - AluSg/x SINE Alu -13 297 108 444 131 0 0 chr1 8064450 8064511 -274129153 - AluS SINE Alu -247 63 3 829 143 0 7 chr1 8064521 8064661 -274129003 - AluJb SINE Alu -18 294 156 2069 116 3 3 chr1 8065245 8065546 -274128118 - AluSx SINE Alu -11 301 1 2174 91 0 10 chr1 8065829 8065964 -274127700 + AluSx SINE Alu 1 136 -176 2347 70 0 0 chr1 8065964 8066263 -274127401 + AluY SINE Alu 1 299 -12 2174 91 0 10 chr1 8066263 8066424 -274127240 + AluSx SINE Alu 136 294 -18 1717 160 3 22 chr1 8066506 8066824 -274126840 + AluJb SINE Alu 1 312 0 917 173 0 0 chr1 8066824 8066986 -274126678 + AluJo/FRAM SINE Alu 144 305 -7 482 325 202 22 chr1 8067232 8067598 -274126066 + L2 LINE L2 2840 3271 -1 895 110 0 0 chr1 8067925 8068052 -274125612 - FLAM_C SINE Alu -16 127 1 654 101 0 0 chr1 8068224 8068313 -274125351 + AluSx SINE Alu 4 92 -221 2271 81 0 7 chr1 8068313 8068609 -274125055 + AluY SINE Alu 1 294 -17 1468 92 53 0 chr1 8068609 8068813 -274124851 + AluSx SINE Alu 71 287 -23 27 29 0 0 chr1 8069550 8069584 -274124080 + AT_rich Low_complexity Low_complexity 1 34 0 256 188 29 0 chr1 8069758 8069827 -274123837 + CT-rich Low_complexity Low_complexity 2 72 0 1802 128 4 11 chr1 8070226 8070500 -274123164 - AluSq SINE Alu -41 272 1 2062 116 7 19 chr1 8070509 8070682 -274122982 - AluSp SINE Alu -7 306 137 2092 96 28 0 chr1 8070682 8070973 -274122691 - AluSg SINE Alu -9 301 3 2062 116 7 19 chr1 8070973 8071109 -274122555 - AluSp SINE Alu -176 137 1 2001 119 0 0 chr1 8071725 8072011 -274121653 - AluSx SINE Alu -18 294 9 351 0 0 0 chr1 8072057 8072096 -274121568 + (TG)n Simple_repeat Simple_repeat 1 39 0 27 29 0 0 chr1 8072644 8072678 -274120986 + AT_rich Low_complexity Low_complexity 1 34 0 724 157 9 0 chr1 8072678 8072793 -274120871 - AluJb SINE Alu -194 118 3 580 275 30 67 chr1 8073500 8073596 -274120068 - MLT1I LTR MaLR -150 259 161 2117 138 32 35 chr1 8073596 8073972 -274119692 - THE1C LTR MaLR 0 375 1 580 275 30 67 chr1 8073972 8074102 -274119562 - MLT1I LTR MaLR -248 161 42 1574 167 13 45 chr1 8074102 8074241 -274119423 + AluJo SINE Alu 1 143 -169 2040 73 0 8 chr1 8074241 8074500 -274119164 + AluSc SINE Alu 40 296 -13 1574 167 13 45 chr1 8074500 8074671 -274118993 + AluJo SINE Alu 143 301 -11 580 275 30 67 chr1 8074671 8074712 -274118952 - MLT1I LTR MaLR -367 42 1 1895 185 22 53 chr1 8074863 8075042 -274118622 + L1MB8 LINE L1 5724 5907 -271 2401 66 3 13 chr1 8075042 8075343 -274118321 + AluY SINE Alu 2 299 -12 1895 185 22 53 chr1 8075343 8075616 -274118048 + L1MB8 LINE L1 5907 6162 -16 289 264 88 22 chr1 8075999 8076090 -274117574 + L2 LINE L2 3155 3251 -21 217 104 0 42 chr1 8076092 8076140 -274117524 + (TAA)n Simple_repeat Simple_repeat 3 48 0 550 75 0 0 chr1 8076204 8076271 -274117393 - AluSp/q SINE Alu -84 229 163 812 132 5 138 chr1 8076275 8076428 -274117236 + L1MB7 LINE L1 6002 6127 -57 1842 138 38 28 chr1 8076428 8076717 -274116947 + AluJb SINE Alu 1 292 -20 812 132 5 138 chr1 8076717 8076752 -274116912 + L1MB7 LINE L1 6127 6165 -19 2259 121 0 0 chr1 8078088 8078393 -274115271 + AluSq SINE Alu 1 305 -8 1266 260 39 41 chr1 8078702 8078903 -274114761 + MLT2C2 LTR ERVL 1 201 -263 2434 77 3 10 chr1 8078903 8079215 -274114449 + AluSg SINE Alu 1 310 0 2324 109 3 0 chr1 8079217 8079521 -274114143 + AluSp SINE Alu 1 305 -8 1266 260 39 41 chr1 8079521 8079563 -274114101 + MLT2C2 LTR ERVL 202 243 -221 752 172 0 26 chr1 8079563 8079701 -274113963 + L1MB3 LINE L1 6035 6170 -13 1895 193 25 6 chr1 8079701 8080058 -274113606 + MLT1A1 LTR MaLR 1 364 -1 752 172 0 26 chr1 8080058 8080070 -274113594 + L1MB3 LINE L1 6170 6181 -2 1266 260 39 41 chr1 8080070 8080083 -274113581 + MLT2C2 LTR ERVL 243 255 -209 1821 145 0 30 chr1 8080083 8080379 -274113285 + AluJb SINE Alu 1 287 -25 1266 260 39 41 chr1 8080379 8080582 -274113082 + MLT2C2 LTR ERVL 255 464 0 289 304 63 0 chr1 8081353 8081432 -274112232 + MIR SINE MIR 23 106 -102 380 144 10 31 chr1 8081570 8081667 -274111997 + CT-rich Low_complexity Low_complexity 3 97 0 793 149 0 28 chr1 8081667 8081848 -274111816 + (TTC)n Simple_repeat Simple_repeat 2 177 0 1028 105 0 0 chr1 8081850 8081983 -274111681 - FLAM_C SINE Alu 0 133 1 1921 233 136 21 chr1 8082188 8082848 -274110816 - MER21B LTR ERV1 -127 736 1 2440 92 0 0 chr1 8082878 8083183 -274110481 - AluSx SINE Alu -7 305 1 1094 170 0 0 chr1 8083547 8083718 -274109946 + AluJb SINE Alu 130 300 -12 1894 146 3 55 chr1 8084938 8085267 -274108397 + AluJb SINE Alu 1 312 0 5148 110 100 3 chr1 8085794 8086547 -274107117 + LTR12 LTR ERV1 1 826 0 316 321 121 0 chr1 8086699 8086839 -274106825 + MIR3 SINE MIR 51 207 -1 2199 120 0 7 chr1 8086942 8087241 -274106423 - AluSx SINE Alu -15 297 1 1591 161 49 18 chr1 8087573 8087858 -274105806 + AluJb SINE Alu 1 294 -18 2097 187 29 37 chr1 8088101 8088224 -274105440 - L1MD3 LINE L1 0 7995 7873 2326 103 7 0 chr1 8088224 8088524 -274105140 - AluSx SINE Alu -6 306 5 2097 187 29 37 chr1 8088524 8088930 -274104734 - L1MD3 LINE L1 -122 7873 5815 225 108 0 0 chr1 8088931 8088968 -274104696 + (T)n Simple_repeat Simple_repeat 1 37 0 1132 132 5 63 chr1 8088983 8089173 -274104491 - AluJo SINE Alu -133 179 1 598 226 0 0 chr1 8089173 8089297 -274104367 - L1MD3 LINE L1 -519 5825 5702 2142 144 0 0 chr1 8089455 8089761 -274103903 + AluSx SINE Alu 1 306 -6 696 156 0 67 chr1 8089934 8090069 -274103595 + FLAM_C SINE Alu 14 139 -4 225 253 152 72 chr1 8090518 8090553 -274103111 - HAL1 LINE L1 -125 2382 2351 1173 83 6 24 chr1 8090553 8090721 -274102943 - L1PA10 LINE L1 -3 6165 6001 225 253 152 72 chr1 8090721 8090800 -274102864 - HAL1 LINE L1 -156 2351 2280 2190 101 3 10 chr1 8090800 8091098 -274102566 - AluSx SINE Alu -16 296 1 225 253 152 72 chr1 8091098 8091604 -274102060 - HAL1 LINE L1 -227 2280 1675 296 158 66 26 chr1 8091933 8092009 -274101655 - MER5B DNA MER1_type -95 83 5 2362 98 0 19 chr1 8092354 8092671 -274100993 - AluY SINE Alu 0 311 1 1964 135 45 0 chr1 8092720 8093008 -274100656 + AluJb SINE Alu 1 301 -11 278 323 8 53 chr1 8093317 8093450 -274100214 + MIR SINE MIR 56 182 -80 672 205 145 0 chr1 8093794 8093960 -274099704 - MLT1B LTR MaLR 0 390 201 2027 150 0 3 chr1 8093990 8094303 -274099361 - AluJb SINE Alu 0 312 1 2342 80 0 10 chr1 8094353 8094679 -274098985 - AluY SINE Alu 0 311 1 586 176 55 93 chr1 8094815 8094997 -274098667 - MLT1B LTR MaLR -211 179 5 279 0 0 0 chr1 8094999 8095030 -274098634 + (CA)n Simple_repeat Simple_repeat 1 31 0 1829 176 28 11 chr1 8095253 8095616 -274098048 + L1MA4 LINE L1 5914 6282 -18 2201 119 0 0 chr1 8095617 8095911 -274097753 - AluSx SINE Alu -18 294 1 185 62 0 31 chr1 8096820 8096852 -274096812 + (TTTA)n Simple_repeat Simple_repeat 2 32 0 1937 141 0 14 chr1 8096854 8097138 -274096526 - AluJb SINE Alu -28 284 5 2300 101 0 0 chr1 8097314 8097610 -274096054 + AluSc SINE Alu 1 296 -13 791 211 78 14 chr1 8097681 8097899 -274095765 + Zaphod DNA AcHobo 3800 4031 0 384 217 30 55 chr1 8097917 8097948 -274095716 - MLT1J LTR MaLR -172 443 413 1803 148 42 0 chr1 8097948 8098232 -274095432 - AluJo SINE Alu -16 296 1 384 217 30 55 chr1 8098232 8098348 -274095316 - MLT1J LTR MaLR -202 413 224 2352 112 0 3 chr1 8098467 8098780 -274094884 - AluSq SINE Alu -1 312 1 312 70 0 0 chr1 8098781 8098824 -274094840 + (TTTA)n Simple_repeat Simple_repeat 2 44 0 1075 134 0 0 chr1 8098824 8098973 -274094691 - AluSg/x SINE Alu -27 283 135 286 288 0 12 chr1 8099008 8099088 -274094576 - MLT1L LTR MaLR -536 79 1 2060 118 3 58 chr1 8099989 8100319 -274093345 - AluSx SINE Alu 0 312 1 626 189 39 8 chr1 8100614 8100741 -274092923 - FLAM_C SINE Alu -2 131 1 1937 139 7 10 chr1 8100791 8101094 -274092570 + AluJb SINE Alu 1 302 -10 2369 82 0 13 chr1 8102164 8102469 -274091195 - AluY SINE Alu -10 301 1 2121 120 3 7 chr1 8102776 8103077 -274090587 - AluJo SINE Alu -2 310 11 1643 172 43 13 chr1 8103955 8104258 -274089406 + AluSx SINE Alu 1 312 0 838 281 46 7 chr1 8104556 8104862 -274088802 + MLT2E LTR ERVL 2 319 -309 425 265 75 40 chr1 8104957 8105157 -274088507 + L1MC5 LINE L1 7717 7923 -38 746 152 91 15 chr1 8106431 8106563 -274087101 + FLAM_C SINE Alu 2 143 0 32 43 0 0 chr1 8106563 8106609 -274087055 + AT_rich Low_complexity Low_complexity 1 46 0 533 202 0 0 chr1 8106617 8106706 -274086958 - AluJb SINE Alu -82 230 142 567 301 62 51 chr1 8106718 8107127 -274086537 + MER34 LTR ERV1 50 466 -76 2028 140 3 31 chr1 8107127 8107448 -274086216 - AluJb SINE Alu 0 312 1 567 301 62 51 chr1 8107448 8107526 -274086138 + MER34 LTR ERV1 466 542 0 349 267 67 7 chr1 8107769 8107919 -274085745 - L1MA10 LINE L1 0 6334 6176 2263 100 7 0 chr1 8107964 8108253 -274085411 + AluSx SINE Alu 1 291 -21 2582 79 0 0 chr1 8108665 8108969 -274084695 - AluSx SINE Alu -8 304 1 1785 159 0 40 chr1 8108983 8109285 -274084379 - AluJb SINE Alu -22 290 1 1782 151 10 30 chr1 8109359 8109657 -274084007 + AluJo SINE Alu 14 305 -7 2058 121 109 73 chr1 8109843 8110022 -274083642 + MSTA LTR MaLR 1 172 -256 2541 76 0 0 chr1 8110022 8110325 -274083339 + AluSx SINE Alu 1 303 -9 2058 121 109 73 chr1 8110325 8110557 -274083107 + MSTA LTR MaLR 172 427 -1 2334 94 3 0 chr1 8110667 8110965 -274082699 - AluSx SINE Alu -13 299 1 2207 113 27 0 chr1 8111141 8111442 -274082222 + AluSx SINE Alu 1 309 -3 1922 151 3 40 chr1 8111592 8111916 -274081748 + AluJo SINE Alu 1 312 0 215 207 0 52 chr1 8112378 8112436 -274081228 + CT-rich Low_complexity Low_complexity 5 59 0 2206 163 14 8 chr1 8112487 8112850 -274080814 - MLT1A1 LTR MaLR 0 365 1 2272 97 82 48 chr1 8112973 8113282 -274080382 + THE1B LTR MaLR 1 325 -39 2297 105 3 0 chr1 8113282 8113586 -274080078 - AluSq SINE Alu -8 305 1 2272 97 82 48 chr1 8113586 8113628 -274080036 + THE1B LTR MaLR 325 364 0 1843 214 165 11 chr1 8114081 8114249 -274079415 + L1MC4 LINE L1 6459 6600 -1442 2218 111 10 7 chr1 8114249 8114547 -274079117 - AluSx SINE Alu -13 299 1 1843 214 165 11 chr1 8114547 8114905 -274078759 + L1MC4 LINE L1 6600 7066 -976 1079 286 186 19 chr1 8114913 8115160 -274078504 + L1MC4 LINE L1 7240 7444 -598 2994 162 25 102 chr1 8115160 8115425 -274078239 + LTR8 LTR ERV1 1 285 -406 2458 89 3 6 chr1 8115425 8115738 -274077926 + AluSp SINE Alu 1 312 -1 2994 162 25 102 chr1 8115738 8116218 -274077446 + LTR8 LTR ERV1 285 689 -2 1079 286 186 19 chr1 8116218 8116433 -274077231 + L1MC4 LINE L1 7444 7622 -420 4040 91 19 2 chr1 8116433 8116974 -274076690 + MER41A LTR ERV1 1 550 -4 1079 286 186 19 chr1 8116974 8117079 -274076585 + L1MC4 LINE L1 7622 7903 -139 352 381 30 0 chr1 8117394 8117528 -274076136 + L2 LINE L2 3175 3312 -1 1968 160 3 3 chr1 8117593 8117905 -274075759 - AluJb SINE Alu 0 312 1 331 256 104 26 chr1 8119252 8119512 -274074152 - LTR48 LTR ERV1 -3 738 387 413 279 16 23 chr1 8119610 8119739 -274073925 - MER34 LTR ERV1 -411 131 4 21 36 0 0 chr1 8119748 8119776 -274073888 + AT_rich Low_complexity Low_complexity 1 28 0 2280 127 0 0 chr1 8119777 8120085 -274073579 + AluSx SINE Alu 1 308 -4 876 236 56 23 chr1 8120180 8120396 -274073268 + MIR SINE MIR 28 250 -12 2324 113 0 3 chr1 8120576 8120886 -274072778 - AluSx SINE Alu -3 309 1 2431 85 3 0 chr1 8121540 8121846 -274071818 + AluY SINE Alu 1 307 -4 300 27 0 0 chr1 8122219 8122256 -274071408 + (TTTA)n Simple_repeat Simple_repeat 2 38 0 1878 113 50 7 chr1 8123071 8123353 -274070311 - AluSx SINE Alu -18 294 1 1661 180 65 0 chr1 8124258 8124536 -274069128 - AluJo SINE Alu -16 296 1 274 182 0 39 chr1 8124541 8124618 -274069046 - L1MC2 LINE L1 0 6344 6271 36 23 0 0 chr1 8124727 8124770 -274068894 + AT_rich Low_complexity Low_complexity 1 43 0 2000 145 3 13 chr1 8125072 8125376 -274068288 + AluJb SINE Alu 1 301 -11 466 224 56 8 chr1 8125482 8125607 -274068057 + MLT1J2 LTR MaLR 23 153 -297 244 254 16 0 chr1 8125686 8125749 -274067915 + MLT1J2 LTR MaLR 266 329 -121 255 286 41 61 chr1 8125873 8125971 -274067693 - L3 LINE CR1 -943 634 539 4138 133 31 2 chr1 8126120 8126737 -274066927 + MER41B LTR ERV1 1 635 0 1253 113 0 0 chr1 8127216 8127384 -274066280 + AluSq SINE Alu 140 307 -6 2110 128 0 39 chr1 8128938 8129244 -274064420 - AluJo SINE Alu -18 294 1 355 317 7 7 chr1 8129439 8129581 -274064083 - L1M4 LINE L1 -3329 2817 2676 2243 108 0 10 chr1 8130068 8130372 -274063292 + AluSx SINE Alu 1 301 -11 2009 119 0 11 chr1 8130372 8130657 -274063007 + AluSc SINE Alu 1 282 -27 502 218 0 0 chr1 8130773 8130874 -274062790 + U6 snRNA snRNA 1 101 -6 236 230 159 0 chr1 8131114 8131240 -274062424 + L1M4 LINE L1 2897 3042 -3104 2393 85 0 7 chr1 8131336 8131643 -274062021 + AluSc SINE Alu 2 306 -3 416 153 0 12 chr1 8131648 8131733 -274061931 - MER96B DNA MER1_type? -266 151 68 306 164 33 0 chr1 8131936 8131997 -274061667 + MER45 DNA AcHobo 44 106 -1475 239 175 0 0 chr1 8131991 8132031 -274061633 + MER45 DNA AcHobo 1542 1581 0 * 686 239 137 9 chr1 8132951 8133241 -274060423 + MER58B DNA MER1_type 6 341 0 2488 65 0 0 chr1 8134079 8134369 -274059295 + AluY SINE Alu 1 290 -21 2844 80 0 3 chr1 8134400 8134763 -274058901 + THE1B LTR MaLR 1 362 -2 572 310 57 27 chr1 8135016 8135351 -274058313 - L1ME4a LINE L1 -255 5866 5522 2388 100 0 0 chr1 8135368 8135668 -274057996 - AluSg SINE Alu -10 300 1 1652 130 8 8 chr1 8137060 8137333 -274056331 - AluJb SINE Alu 0 319 47 1985 145 3 0 chr1 8138063 8138353 -274055311 + AluJb SINE Alu 1 291 -21 907 117 0 0 chr1 8138361 8138481 -274055183 + AluJb SINE Alu 1 120 -192 255 213 0 0 chr1 8138499 8138574 -274055090 + A-rich Low_complexity Low_complexity 1 75 0 2488 77 3 0 chr1 8138987 8139286 -274054378 + AluSx SINE Alu 1 300 -12 2504 51 3 0 chr1 8139706 8140000 -274053664 + AluY SINE Alu 1 295 -16 1037 194 0 0 chr1 8140139 8140314 -274053350 - AluJ SINE Alu -13 299 125 90 77 0 0 chr1 8140314 8140509 -274053155 + AT_rich Low_complexity Low_complexity 1 195 0 870 143 0 0 chr1 8140516 8140635 -274053029 - AluJ SINE Alu -193 119 1 2426 97 0 0 chr1 8142859 8143169 -274050495 - AluSq SINE Alu -3 310 1 715 135 0 0 chr1 8143548 8143659 -274050005 - HY1 scRNA scRNA -1 111 1 2172 110 3 3 chr1 8143665 8143977 -274049687 - AluSx SINE Alu 0 312 1 690 225 22 0 chr1 8144060 8144198 -274049466 - FLAM_C SINE Alu -1 142 2 2444 246 44 28 chr1 8144501 8144722 -274048942 - MER82 DNA MER2_type 0 653 437 2320 87 0 3 chr1 8144722 8145029 -274048635 - AluSp SINE Alu 0 306 1 2444 246 44 28 chr1 8145029 8145447 -274048217 - MER82 DNA MER2_type -216 437 3 2397 86 0 0 chr1 8148210 8148511 -274045153 - AluSg SINE Alu -9 301 1 1461 85 0 0 chr1 8149283 8149541 -274044123 + (TCCA)n Simple_repeat Simple_repeat 1 258 0 1105 166 10 30 chr1 8149643 8149842 -274043822 + AluJo SINE Alu 16 210 -102 1426 89 0 31 chr1 8149858 8150049 -274043615 - AluSq SINE Alu -52 261 77 957 152 0 26 chr1 8150051 8150202 -274043462 + AluJo/FRAM SINE Alu 156 302 -10 794 131 26 13 chr1 8150205 8150871 -274042793 + (TG)n Simple_repeat Simple_repeat 1 674 0 239 270 34 27 chr1 8150886 8151034 -274042630 + (TG)n Simple_repeat Simple_repeat 1 149 0 671 163 59 0 chr1 8153385 8153520 -274040144 + L1MB4 LINE L1 6038 6180 0 411 226 111 51 chr1 8153668 8153903 -274039761 + HAL1 LINE L1 923 1171 -1336 902 328 75 34 chr1 8154008 8154572 -274039092 + ERVL LTR ERVL 4144 4730 -1034 201 301 136 19 chr1 8154847 8154950 -274038714 + MIR SINE MIR 94 208 -54 207 0 0 0 chr1 8155484 8155507 -274038157 + (CA)n Simple_repeat Simple_repeat 2 24 0 911 263 55 25 chr1 8156387 8156748 -274036916 + L1MC5 LINE L1 7073 7444 -517 1952 271 68 6 chr1 8156864 8157494 -274036170 + ERVL LTR ERVL 24 692 -5072 1549 218 13 7 chr1 8157688 8157986 -274035678 + AluJb SINE Alu 1 300 -12 380 175 25 0 chr1 8158387 8158467 -274035197 - L1 LINE L1 -2515 3631 3550 273 376 23 50 chr1 8158482 8158514 -274035150 - MIR SINE MIR -25 237 206 2100 117 35 0 chr1 8158514 8158796 -274034868 - AluSg SINE Alu -18 292 1 273 376 23 50 chr1 8158796 8158981 -274034683 - MIR SINE MIR -56 206 26 991 220 45 19 chr1 8159192 8159456 -274034208 + MER58 DNA MER1_type 1 271 -2149 937 119 0 0 chr1 8159556 8159682 -274033982 - AluJb SINE Alu -186 126 1 28 29 0 0 chr1 8159682 8159717 -274033947 + AT_rich Low_complexity Low_complexity 1 35 0 254 270 175 22 chr1 8161449 8161586 -274032078 + MIR SINE MIR 99 256 -6 265 249 74 85 chr1 8161857 8162046 -274031618 - L2 LINE L2 -368 2946 2760 256 128 0 0 chr1 8163081 8163120 -274030544 + Alu SINE Alu 1 39 -263 376 292 103 77 chr1 8163340 8163535 -274030129 + L2 LINE L2 3043 3242 -30 664 305 65 4 chr1 8164091 8164337 -274029327 - MIR SINE MIR 0 262 2 207 0 0 0 chr1 8164895 8164918 -274028746 + (A)n Simple_repeat Simple_repeat 1 23 0 650 286 84 26 chr1 8165103 8165330 -274028334 + MIR SINE MIR 2 241 -21 239 340 28 0 chr1 8166727 8166833 -274026831 + GA-rich Low_complexity Low_complexity 2 110 0 1074 243 80 10 chr1 8167086 8167386 -274026278 + L2 LINE L2 1598 1918 -1396 260 286 152 18 chr1 8168393 8168505 -274025159 + L2 LINE L2 3139 3265 -7 262 322 178 0 chr1 8169465 8169583 -274024081 - L2 LINE L2 0 3272 3134 828 228 94 20 chr1 8169764 8169966 -274023698 + MER20 DNA MER1_type 1 217 -2 306 261 33 33 chr1 8170096 8170188 -274023476 - L1MC4 LINE L1 -1343 6699 6608 746 207 60 0 chr1 8171451 8171601 -274022063 + MIR SINE MIR 77 235 -27 592 285 52 10 chr1 8171745 8171938 -274021726 - MIR SINE MIR -26 236 36 247 261 49 63 chr1 8171993 8172135 -274021529 - L2 LINE L2 -93 3220 3081 2293 119 0 0 chr1 8172628 8172923 -274020741 + AluSx SINE Alu 1 295 -17 605 199 175 18 chr1 8173065 8173231 -274020433 - MIR SINE MIR -39 223 32 269 208 19 0 chr1 8176452 8176505 -274017159 - L2 LINE L2 -215 3057 3004 282 326 90 17 chr1 8176524 8176702 -274016962 - L2 LINE L2 0 3313 3123 530 301 78 5 chr1 8176956 8177175 -274016489 + MIR SINE MIR 16 250 -12 181 319 0 29 chr1 8177201 8177270 -274016394 + MIR SINE MIR 190 256 -6 227 266 234 0 chr1 8177933 8178027 -274015637 - MIR SINE MIR -116 146 31 363 206 0 0 chr1 8178558 8178631 -274015033 - MER116 DNA Mariner -3 77 5 257 236 255 0 chr1 8178703 8178809 -274014855 - L2 LINE L2 -11 3302 3170 714 150 0 0 chr1 8179222 8179335 -274014329 + L1PB4 LINE L1 6037 6149 -7 664 261 74 82 chr1 8180152 8180555 -274013109 - MLT1L LTR MaLR -9 606 207 246 268 0 0 chr1 8180531 8180587 -274013077 - MLT1J LTR MaLR -345 166 111 * 4005 97 26 3 chr1 8180962 8181529 -274012135 + THE1A-int LTR MaLR 1001 1580 0 2697 82 6 0 chr1 8181529 8181882 -274011782 + THE1A LTR MaLR 1 355 0 1278 277 254 23 chr1 8182671 8183466 -274010198 - L2 LINE L2 -2094 1220 242 1120 222 14 0 chr1 8184106 8184327 -274009337 + MER58A DNA MER1_type 1 224 0 10866 17 1 0 chr1 8185278 8187297 -274006367 + L1PA3 LINE L1 4131 6150 -5 842 191 16 31 chr1 8187507 8187701 -274005963 + MER20 DNA MER1_type 29 219 0 2132 111 0 7 chr1 8187850 8188158 -274005506 - AluSx SINE Alu 0 306 1 555 311 34 0 chr1 8189472 8189649 -274004015 + MIR SINE MIR 2 184 -78 307 153 141 59 chr1 8189752 8189837 -274003827 + MIR SINE MIR 171 262 0 743 352 70 26 chr1 8190151 8190878 -274002786 - L2 LINE L2 -38 3234 2475 1302 206 4 8 chr1 8190878 8191130 -274002534 + AluJo SINE Alu 49 299 -13 1029 98 23 0 chr1 8191413 8191546 -274002118 + AluSq/x SINE Alu 1 136 -177 2237 121 3 0 chr1 8191546 8191852 -274001812 + AluSx SINE Alu 1 307 -5 21 36 0 0 chr1 8192331 8192359 -274001305 + AT_rich Low_complexity Low_complexity 1 28 0 1178 178 5 10 chr1 8192469 8192677 -274000987 - AluJb SINE Alu -103 209 3 2240 93 3 22 chr1 8192918 8193229 -274000435 + AluSg SINE Alu 1 305 -5 607 274 11 22 chr1 8193262 8193441 -274000223 - MIR SINE MIR -1 261 85 2029 127 3 7 chr1 8193524 8193824 -273999840 + AluY SINE Alu 3 301 -10 1950 165 0 0 chr1 8193831 8194140 -273999524 + AluSx SINE Alu 1 309 -3 23 101 0 0 chr1 8195146 8195225 -273998439 + AT_rich Low_complexity Low_complexity 1 79 0 189 74 0 0 chr1 8198387 8198414 -273995250 + (CA)n Simple_repeat Simple_repeat 2 28 0 23 33 0 0 chr1 8198872 8198902 -273994762 + AT_rich Low_complexity Low_complexity 1 30 0 2151 100 10 3 chr1 8199680 8199970 -273993694 + AluSq SINE Alu 9 300 -13 1438 189 111 4 chr1 8200785 8201055 -273992609 - AluJo SINE Alu -13 299 1 1774 173 3 10 chr1 8202017 8202318 -273991346 + AluJb SINE Alu 1 299 -13 1328 169 3 124 chr1 8202472 8202663 -273991001 - AluSp SINE Alu -1 312 182 2303 113 0 0 chr1 8202663 8202963 -273990701 - AluSx SINE Alu -12 300 1 1328 169 3 124 chr1 8202963 8203126 -273990538 - AluSp SINE Alu -131 182 1 1425 220 20 7 chr1 8203163 8203458 -273990206 + AluJo SINE Alu 1 299 -13 1038 90 23 0 chr1 8203742 8203875 -273989789 + AluSq/x SINE Alu 1 136 -176 2237 121 3 0 chr1 8203875 8204181 -273989483 + AluSx SINE Alu 1 307 -5 21 36 0 0 chr1 8204660 8204688 -273988976 + AT_rich Low_complexity Low_complexity 1 28 0 1178 178 5 10 chr1 8204798 8205006 -273988658 - AluJb SINE Alu -103 209 3 2240 93 3 22 chr1 8205247 8205558 -273988106 + AluSg SINE Alu 1 305 -5 607 274 11 22 chr1 8205591 8205770 -273987894 - MIR SINE MIR -1 261 85 2029 127 3 7 chr1 8205853 8206153 -273987511 + AluY SINE Alu 3 301 -10 1950 165 0 0 chr1 8206160 8206469 -273987195 + AluSx SINE Alu 1 309 -3 23 101 0 0 chr1 8207475 8207554 -273986110 + AT_rich Low_complexity Low_complexity 1 79 0 189 74 0 0 chr1 8210716 8210743 -273982921 + (CA)n Simple_repeat Simple_repeat 2 28 0 23 33 0 0 chr1 8211201 8211231 -273982433 + AT_rich Low_complexity Low_complexity 1 30 0 2151 100 10 3 chr1 8212009 8212299 -273981365 + AluSq SINE Alu 9 300 -13 232 244 35 58 chr1 8213014 8213100 -273980564 - L2 LINE L2 -1 3312 3229 428 294 65 30 chr1 8213157 8213358 -273980306 - MIR SINE MIR -39 223 16 211 354 46 39 chr1 8214827 8214957 -273978707 + L2 LINE L2 3133 3263 -9 349 240 10 20 chr1 8216051 8216151 -273977513 + MER94 DNA DNA 2 100 -34 21 36 0 0 chr1 8217235 8217263 -273976401 + AT_rich Low_complexity Low_complexity 1 28 0 225 0 0 0 chr1 8217425 8217450 -273976214 + (A)n Simple_repeat Simple_repeat 1 25 0 1974 130 0 14 chr1 8218108 8218392 -273975272 + AluSx SINE Alu 6 285 -27 185 261 138 0 chr1 8219595 8219660 -273974004 - MIR SINE MIR -112 150 77 216 0 0 0 chr1 8220079 8220103 -273973561 + (TTTTG)n Simple_repeat Simple_repeat 1 24 0 526 155 0 0 chr1 8220113 8220197 -273973467 - AluJ/FLAM SINE Alu -228 84 1 759 171 0 0 chr1 8220421 8220544 -273973120 - FLAM_C SINE Alu -20 123 1 3188 82 52 7 chr1 8221357 8221822 -273971842 + LTR19A LTR ERV1 1 486 0 26 0 0 0 chr1 8222280 8222306 -273971358 + AT_rich Low_complexity Low_complexity 1 26 0 1694 101 36 8 chr1 8222306 8222553 -273971111 + AluSx SINE Alu 44 297 -15 709 183 0 51 chr1 8225545 8225664 -273968000 + FRAM SINE Alu 33 146 -166 288 77 0 0 chr1 8225664 8225703 -273967961 + (CATA)n Simple_repeat Simple_repeat 1 39 0 709 183 0 51 chr1 8225703 8225720 -273967944 + FRAM SINE Alu 146 162 -14 819 195 6 30 chr1 8226193 8226357 -273967307 + FRAM SINE Alu 1 160 -16 1607 183 11 21 chr1 8228077 8228362 -273965302 + AluJo SINE Alu 1 282 -30 300 137 0 0 chr1 8228366 8228417 -273965247 + (CA)n Simple_repeat Simple_repeat 2 52 0 1740 173 7 7 chr1 8228584 8228890 -273964774 + AluJb SINE Alu 1 306 -6 2381 76 0 0 chr1 8229685 8229974 -273963690 - AluY SINE Alu -22 289 1 317 299 110 16 chr1 8230732 8230859 -273962805 - L2 LINE L2 -7 3265 3127 2149 96 7 0 chr1 8230877 8231226 -273962438 - AluSp SINE Alu 0 351 1 726 223 60 107 chr1 8231271 8231326 -273962338 + MLT1J LTR MaLR 6 62 -449 979 173 13 0 chr1 8231326 8231513 -273962151 + FRAM SINE Alu 1 53 0 726 223 60 107 chr1 8231513 8231754 -273961910 + MLT1J LTR MaLR 62 291 -220 27 0 0 0 chr1 8231890 8231917 -273961747 + AT_rich Low_complexity Low_complexity 1 27 0 1278 195 130 38 chr1 8232984 8233441 -273960223 - Charlie4a DNA MER1_type -15 493 3 2229 73 59 0 chr1 8233722 8234011 -273959653 - AluY SINE Alu -5 306 1 960 188 0 12 chr1 8234944 8235114 -273958550 + AluJb SINE Alu 136 303 -9 29 0 0 0 chr1 8237002 8237031 -273956633 + AT_rich Low_complexity Low_complexity 1 29 0 431 214 111 0 chr1 8237130 8237247 -273956417 - MIR SINE MIR -22 240 111 262 295 115 0 chr1 8237904 8237982 -273955682 - L2 LINE L2 -25 3288 3202 325 264 97 21 chr1 8238015 8238159 -273955505 - L2 LINE L2 -2308 1006 852 663 188 0 0 chr1 8239630 8239731 -273953933 - FLAM_A SINE Alu -41 101 1 267 265 167 61 chr1 8239944 8240076 -273953588 + MIR SINE MIR 63 208 -54 463 262 154 35 chr1 8240448 8240612 -273953052 - MER5A DNA MER1_type -1 188 2 1355 192 77 133 chr1 8241093 8241185 -273952479 + MLT1C LTR MaLR 1 97 -370 1575 195 6 31 chr1 8241185 8241503 -273952161 + AluJo SINE Alu 1 310 -2 1355 192 77 133 chr1 8241503 8241775 -273951889 + MLT1C LTR MaLR 97 332 -135 1317 162 178 0 chr1 8241775 8242028 -273951636 + AluJo SINE Alu 1 298 -14 1355 192 77 133 chr1 8242028 8242157 -273951507 + MLT1C LTR MaLR 332 467 0 348 24 0 0 chr1 8242574 8242615 -273951049 + (TG)n Simple_repeat Simple_repeat 2 42 0 865 207 177 10 chr1 8242904 8243171 -273950493 - L1ME3A LINE L1 -9 6161 5852 1811 167 0 0 chr1 8243181 8243468 -273950196 - AluJb SINE Alu -25 287 1 2358 90 0 0 chr1 8244384 8244683 -273948981 + AluSx SINE Alu 1 299 -13 182 200 33 17 chr1 8244947 8245007 -273948657 - L2 LINE L2 -342 2972 2912 1931 103 3 125 chr1 8245421 8245553 -273948111 + AluSx SINE Alu 5 75 -227 2381 82 0 0 chr1 8245553 8245847 -273947817 + AluSc SINE Alu 1 294 -15 1931 103 3 125 chr1 8245847 8246043 -273947621 + AluSx SINE Alu 75 293 -9 1547 201 15 0 chr1 8246068 8246341 -273947323 + AluJo SINE Alu 1 277 -35 897 194 25 0 chr1 8246517 8246677 -273946987 + AluJb SINE Alu 138 301 -11 875 225 25 0 chr1 8246756 8246916 -273946748 - FRAM SINE Alu -2 164 1 2305 152 24 8 chr1 8247405 8247774 -273945890 - THE1C LTR MaLR 0 375 1 578 218 0 0 chr1 8247832 8247933 -273945731 - FAM SINE Alu -83 102 2 261 235 147 20 chr1 8248042 8248144 -273945520 + MER103 DNA DNA 45 159 -7 2384 55 41 0 chr1 8248362 8248653 -273945011 + AluY SINE Alu 1 303 -8 1416 169 32 18 chr1 8248994 8249272 -273944392 - AluJo SINE Alu -30 282 1 1929 128 7 17 chr1 8249562 8249850 -273943814 - AluJb SINE Alu -4 308 24 2257 105 3 0 chr1 8250147 8250442 -273943222 - AluSx SINE Alu -16 296 1 192 226 0 0 chr1 8251163 8251225 -273942439 + (TCTCTG)n Simple_repeat Simple_repeat 5 66 0 733 197 0 8 chr1 8251767 8251899 -273941765 + FLAM_C SINE Alu 1 131 -2 2338 92 0 16 chr1 8251957 8252273 -273941391 + AluY SINE Alu 1 311 0 2059 127 20 0 chr1 8252501 8252793 -273940871 + AluSx SINE Alu 1 298 -14 26 0 0 0 chr1 8253071 8253097 -273940567 + AT_rich Low_complexity Low_complexity 1 26 0 264 308 132 0 chr1 8253134 8253225 -273940439 - L2 LINE L2 -2 3270 3168 2326 101 3 0 chr1 8253410 8253718 -273939946 + AluY SINE Alu 1 309 -2 2171 122 0 0 chr1 8254209 8254513 -273939151 + AluSx SINE Alu 1 304 -8 30 83 0 0 chr1 8254980 8255052 -273938612 + AT_rich Low_complexity Low_complexity 1 72 0 208 255 174 67 chr1 8255375 8255524 -273938140 - MIR SINE MIR -70 192 28 1002 254 195 45 chr1 8255827 8256816 -273936848 - L2 LINE L2 -4 3309 2169 1487 181 0 77 chr1 8257327 8257653 -273936011 + AluJo SINE Alu 1 301 -11 504 270 44 53 chr1 8257704 8257930 -273935734 + MIR SINE MIR 28 251 -11 237 298 16 99 chr1 8258424 8258545 -273935119 + L2 LINE L2 2579 2689 -625 326 143 14 29 chr1 8258575 8258645 -273935019 - L1MB8 LINE L1 0 6178 6110 214 258 147 85 chr1 8258693 8259046 -273934618 + L2 LINE L2 2819 3193 -79 329 310 148 35 chr1 8259111 8259482 -273934182 + L2 LINE L2 1939 2351 -963 791 136 0 9 chr1 8259497 8259607 -273934057 - AluJo SINE Alu -155 157 49 709 353 70 26 chr1 8259607 8260334 -273933330 + L2 LINE L2 2475 3234 -38 303 153 141 59 chr1 8260648 8260733 -273932931 - MIR SINE MIR 0 262 171 550 311 34 0 chr1 8260836 8261013 -273932651 - MIR SINE MIR -78 184 2 2134 111 0 7 chr1 8262327 8262635 -273931029 + AluSx SINE Alu 1 306 0 1171 190 14 23 chr1 8262784 8263005 -273930659 - MER20 DNA MER1_type 0 219 1 1702 190 36 12 chr1 8263481 8263858 -273929806 + L1MB8 LINE L1 5728 6115 -63 356 0 23 0 chr1 8263859 8263903 -273929761 + (TG)n Simple_repeat Simple_repeat 2 46 0 482 110 30 70 chr1 8263929 8263959 -273929705 + L1MB7 LINE L1 6089 6119 -65 482 0 17 0 chr1 8263959 8264017 -273929647 + (TG)n Simple_repeat Simple_repeat 2 60 0 1672 130 3 98 chr1 8264017 8264333 -273929331 - AluJb SINE Alu -26 286 1 482 110 30 70 chr1 8264333 8264401 -273929263 + L1MB7 LINE L1 6117 6184 0 996 233 324 29 chr1 8265289 8266116 -273927548 - L2 LINE L2 -3 3310 2183 725 147 0 66 chr1 8266922 8267058 -273926606 + FLAM_C SINE Alu 1 127 -16 1572 200 3 3 chr1 8267108 8267408 -273926256 - AluJo SINE Alu -12 300 1 2202 92 11 0 chr1 8268025 8268330 -273925334 - AluSq SINE Alu 0 308 1 1557 168 51 7 chr1 8268701 8268975 -273924689 + AluJb SINE Alu 6 291 -21 27 49 0 0 chr1 8268982 8269023 -273924641 + AT_rich Low_complexity Low_complexity 1 41 0 850 172 0 8 chr1 8270310 8270444 -273923220 + AluJ SINE Alu 1 133 -169 470 113 0 0 chr1 8270445 8270507 -273923157 + AluJ SINE Alu 120 181 -131 1142 123 0 0 chr1 8270507 8270661 -273923003 + AluSq SINE Alu 133 286 -27 528 16 0 0 chr1 8270661 8270722 -273922942 + (CATA)n Simple_repeat Simple_repeat 2 62 0 1414 167 31 0 chr1 8270722 8270949 -273922715 - MER46A DNA MER2_type -2 234 1 2342 95 13 0 chr1 8272082 8272388 -273921276 + AluSx SINE Alu 1 310 -2 494 284 44 38 chr1 8272592 8272775 -273920889 + MIR SINE MIR 65 248 -14 1807 86 11 156 chr1 8273298 8273657 -273920007 + AluSc SINE Alu 1 307 -2 987 176 40 10 chr1 8273852 8274051 -273919613 - MER3 DNA MER1_type -4 205 1 222 37 0 0 chr1 8277966 8277993 -273915671 + (A)n Simple_repeat Simple_repeat 1 27 0 21 0 0 0 chr1 8278574 8278595 -273915069 + AT_rich Low_complexity Low_complexity 1 21 0 1934 138 3 0 chr1 8278595 8278878 -273914786 + AluSq SINE Alu 1 284 -29 198 0 0 0 chr1 8278878 8278900 -273914764 + (CAAT)n Simple_repeat Simple_repeat 2 23 0 311 64 0 21 chr1 8279763 8279810 -273913854 + (TTCA)n Simple_repeat Simple_repeat 3 48 0 1802 174 3 0 chr1 8279810 8280092 -273913572 - AluJo SINE Alu -29 283 1 1296 63 0 84 chr1 8280374 8280564 -273913100 + AluY SINE Alu 1 174 -137 1067 269 161 81 chr1 8280762 8280915 -273912749 - L2 LINE L2 -934 2380 2241 1929 169 0 7 chr1 8280915 8281217 -273912447 - AluJb SINE Alu -12 300 1 1067 269 161 81 chr1 8281217 8281402 -273912262 - L2 LINE L2 -1073 2241 2072 2326 101 0 0 chr1 8281402 8281699 -273911965 + AluSq SINE Alu 1 297 -16 1067 269 161 81 chr1 8281699 8282424 -273911240 - L2 LINE L2 -1242 2072 1230 601 226 0 8 chr1 8282961 8283094 -273910570 + MER47A DNA MER2_type 1 132 -234 1051 188 99 14 chr1 8283094 8283218 -273910446 + AluJo SINE Alu 5 117 -195 1931 126 23 26 chr1 8283218 8283528 -273910136 + AluSx SINE Alu 1 309 -3 1051 188 99 14 chr1 8283528 8283626 -273910038 + AluJo SINE Alu 117 246 -66 236 255 0 0 chr1 8283633 8283680 -273909984 + (TCCA)n Simple_repeat Simple_repeat 4 50 0 1235 144 14 0 chr1 8283686 8283901 -273909763 + MER47A DNA MER2_type 148 365 -1 333 171 0 45 chr1 8283901 8283989 -273909675 + L1MB8 LINE L1 6094 6177 -1 1524 195 8 57 chr1 8285006 8285391 -273908273 - MLT1A2 LTR MaLR -8 366 1 2270 85 0 0 chr1 8285813 8286130 -273907534 - AluSc SINE Alu 0 317 1 821 140 54 59 chr1 8287157 8287279 -273906385 + MER2 DNA MER2_type 1 123 -222 2065 138 3 7 chr1 8287279 8287584 -273906080 - AluSx SINE Alu -8 304 1 821 140 54 59 chr1 8287584 8287647 -273906017 + MER2 DNA MER2_type 123 185 -160 4471 161 29 9 chr1 8287996 8288862 -273904802 + L1MC2 LINE L1 5461 6343 -1 4493 206 44 16 chr1 8289024 8289414 -273904250 + L1P4 LINE L1 4099 4477 -1691 2142 136 0 0 chr1 8289414 8289708 -273903956 + AluSg SINE Alu 1 294 -16 4493 206 44 16 chr1 8289708 8290403 -273903261 + L1P4 LINE L1 4477 5245 -923 1873 141 3 36 chr1 8290403 8290707 -273902957 + AluSx SINE Alu 1 294 -18 4493 206 44 16 chr1 8290707 8291264 -273902400 + L1P4 LINE L1 5245 5785 -383 1786 166 7 3 chr1 8291264 8291554 -273902110 + AluSx SINE Alu 1 291 -21 2202 114 0 3 chr1 8291561 8291867 -273901797 + AluSx SINE Alu 1 305 -7 21 36 0 0 chr1 8292260 8292288 -273901376 + AT_rich Low_complexity Low_complexity 1 28 0 2212 82 14 0 chr1 8292331 8292622 -273901042 - AluY SINE Alu -16 295 1 417 91 15 0 chr1 8292951 8293017 -273900647 - MER41B LTR ERV1 -88 547 481 22 56 0 0 chr1 8293017 8293053 -273900611 + AT_rich Low_complexity Low_complexity 1 36 0 730 146 0 83 chr1 8293608 8293752 -273899912 - FLAM_C SINE Alu -1 132 1 461 133 0 36 chr1 8293847 8293930 -273899734 - AluJ/FRAM SINE Alu -9 303 224 469 246 105 9 chr1 8293980 8294094 -273899570 + L2 LINE L2 3167 3291 -22 443 274 137 21 chr1 8294062 8294296 -273899368 - MIR SINE MIR 0 262 2 * 2298 106 0 0 chr1 8294961 8295263 -273898401 + AluSg SINE Alu 3 304 -6 375 23 0 0 chr1 8296222 8296266 -273897398 + (CA)n Simple_repeat Simple_repeat 2 45 0 231 335 66 36 chr1 8299134 8299301 -273894363 - MIR SINE MIR -54 208 37 292 320 0 0 chr1 8300108 8300183 -273893481 + L2 LINE L2 3004 3078 -194 2409 81 10 0 chr1 8300489 8300796 -273892868 + AluY SINE Alu 1 310 -1 698 176 50 0 chr1 8300827 8300946 -273892718 + FLAM_A SINE Alu 1 125 -8 1371 181 115 0 chr1 8302466 8302770 -273890894 + MER44D DNA MER2_type 1 609 0 1871 105 83 78 chr1 8302790 8302954 -273890710 + THE1B LTR MaLR 2 164 -200 1907 135 6 52 chr1 8302954 8303280 -273890384 - AluSx SINE Alu -1 311 1 1871 105 83 78 chr1 8303280 8303476 -273890188 + THE1B LTR MaLR 164 364 0 2505 61 0 26 chr1 8303560 8303873 -273889791 - AluY SINE Alu -5 306 2 818 128 14 43 chr1 8303931 8304072 -273889592 - FLAM_C SINE Alu -6 137 1 248 296 82 22 chr1 8304316 8304451 -273889213 - L1MC/D LINE L1 -1984 5824 5682 2324 80 10 0 chr1 8305169 8305469 -273888195 - AluY SINE Alu -8 303 1 2176 110 0 0 chr1 8305551 8305841 -273887823 + AluSx SINE Alu 23 312 0 23 54 0 0 chr1 8307429 8307466 -273886198 + AT_rich Low_complexity Low_complexity 1 37 0 22 56 0 0 chr1 8307935 8307971 -273885693 + AT_rich Low_complexity Low_complexity 1 36 0 24 0 0 0 chr1 8308078 8308102 -273885562 + AT_rich Low_complexity Low_complexity 1 24 0 2216 111 0 0 chr1 8308106 8308425 -273885239 + AluSq SINE Alu 1 319 0 23 0 0 0 chr1 8308803 8308826 -273884838 + AT_rich Low_complexity Low_complexity 1 23 0 943 213 163 80 chr1 8309039 8309536 -273884128 + HAL1 LINE L1 1520 1974 -533 2206 107 0 0 chr1 8309536 8309826 -273883838 - AluSc SINE Alu -19 290 1 943 213 163 80 chr1 8309826 8309884 -273883780 + HAL1 LINE L1 1974 2026 -481 2296 74 3 0 chr1 8309884 8310168 -273883496 + AluSq SINE Alu 1 285 -28 943 213 163 80 chr1 8310168 8310249 -273883415 + HAL1 LINE L1 2026 2210 -297 1769 186 4 0 chr1 8310281 8310556 -273883108 + AluJb SINE Alu 6 281 -31 874 230 11 0 chr1 8310636 8310827 -273882837 + AluJb SINE Alu 118 310 -2 1660 176 22 45 chr1 8310835 8311148 -273882516 + AluJb SINE Alu 1 306 -6 262 294 39 0 chr1 8311149 8311251 -273882413 + HAL1 LINE L1 2319 2424 -83 696 279 104 5 chr1 8313345 8313567 -273880097 + MIR SINE MIR 7 250 -12 375 231 74 91 chr1 8314628 8314673 -273878991 - L2 LINE L2 0 3313 3269 1886 83 8 38 chr1 8314673 8314938 -273878726 + AluSc SINE Alu 37 293 -16 375 231 74 91 chr1 8314938 8315134 -273878530 - L2 LINE L2 -44 3269 3076 260 179 13 0 chr1 8315146 8315224 -273878440 + GA-rich Low_complexity Low_complexity 1 79 0 2145 117 7 0 chr1 8315428 8315718 -273877946 + AluSx SINE Alu 1 292 -20 2027 142 0 7 chr1 8315965 8316267 -273877397 - AluSx SINE Alu -11 301 2 414 209 35 52 chr1 8316560 8316675 -273876989 + Tigger1 DNA MER2_type 4 116 -2302 * 1022 92 32 38 chr1 8316667 8316852 -273876812 + LTR54 LTR ERV1 327 510 0 200 364 35 28 chr1 8316873 8317016 -273876648 + L2 LINE L2 2631 2774 -540 528 276 105 20 chr1 8317026 8317178 -273876486 - MIR SINE MIR -7 255 91 1691 155 6 75 chr1 8317195 8317556 -273876108 - MER2 DNA MER2_type -8 337 2 2091 92 56 0 chr1 8319219 8319503 -273874161 + AluSg SINE Alu 1 300 -10 2295 99 3 0 chr1 8319938 8320232 -273873432 + AluSq SINE Alu 1 295 -18 21 57 0 0 chr1 8320236 8320271 -273873393 + AT_rich Low_complexity Low_complexity 1 35 0 2430 81 10 10 chr1 8320797 8321107 -273872557 - AluSg SINE Alu 0 310 1 2051 134 3 0 chr1 8321460 8321759 -273871905 - AluSx SINE Alu -12 300 1 2072 105 4 0 chr1 8321820 8322096 -273871568 - AluSx SINE Alu -35 277 1 2286 97 3 0 chr1 8322138 8322446 -273871218 - AluSc SINE Alu 0 309 1 2014 88 11 18 chr1 8323539 8323812 -273869852 + AluSp SINE Alu 1 271 -42 2285 93 0 3 chr1 8324118 8324408 -273869256 - AluSg SINE Alu -21 289 1 604 186 7 57 chr1 8324408 8324548 -273869116 + MER58B DNA MER1_type 204 336 -5 242 264 97 0 chr1 8325139 8325211 -273868453 + MIR SINE MIR 38 116 -92 2368 101 0 0 chr1 8325220 8325528 -273868136 - AluSx SINE Alu -4 308 1 657 216 157 33 chr1 8325531 8325684 -273867980 - AluSg/x SINE Alu -19 293 122 341 219 0 14 chr1 8325714 8325787 -273867877 - MER5A DNA MER1_type -1 188 117 2692 235 50 44 chr1 8325799 8326660 -273867004 + L1MCb LINE L1 13 878 -5167 264 30 0 0 chr1 8326660 8326693 -273866971 + (TTTG)n Simple_repeat Simple_repeat 2 34 0 2257 92 3 3 chr1 8326695 8326988 -273866676 - AluY SINE Alu -18 293 1 2938 162 95 67 chr1 8326992 8327626 -273866038 + L1MC2 LINE L1 5595 6210 -134 195 100 0 0 chr1 8327626 8327656 -273866008 + (TG)n Simple_repeat Simple_repeat 1 30 0 2938 162 95 67 chr1 8327656 8327691 -273865973 + L1MC2 LINE L1 6210 6243 -101 2701 38 0 13 chr1 8327691 8328006 -273865658 - AluY SINE Alu 0 311 1 2938 162 95 67 chr1 8328006 8328052 -273865612 + L1MC2 LINE L1 6243 6331 -13 475 262 74 0 chr1 8328078 8328200 -273865464 - MER5A DNA MER1_type -58 131 1 1539 187 257 22 chr1 8328261 8328699 -273864965 + MLT1F LTR MaLR 1 502 -3 1878 93 43 25 chr1 8328714 8329019 -273864645 + AluSq SINE Alu 1 310 0 555 258 74 0 chr1 8329446 8329609 -273864055 + MIR SINE MIR 87 261 -1 188 337 171 21 chr1 8329611 8329804 -273863860 + L2 LINE L2 2838 3059 -213 23 0 0 0 chr1 8329842 8329865 -273863799 + AT_rich Low_complexity Low_complexity 1 23 0 271 270 0 60 chr1 8329893 8329993 -273863671 - MIR SINE MIR 0 262 169 22 0 0 0 chr1 8330185 8330207 -273863457 + AT_rich Low_complexity Low_complexity 1 22 0 513 265 129 34 chr1 8330239 8330463 -273863201 - L1MC4a LINE L1 -1791 6017 5757 2309 122 135 3 chr1 8330463 8330841 -273862823 + MSTA LTR MaLR 1 428 0 513 265 129 34 chr1 8330841 8330910 -273862754 - L1MC4a LINE L1 -2051 5757 5696 2344 70 0 3 chr1 8331074 8331392 -273862272 - AluY SINE Alu 0 317 1 207 0 0 0 chr1 8331738 8331761 -273861903 + (A)n Simple_repeat Simple_repeat 1 23 0 901 118 0 59 chr1 8332469 8332621 -273861043 - FLAM_C SINE Alu 0 143 1 830 120 0 0 chr1 8333156 8333281 -273860383 - AluSg/x SINE Alu 0 312 188 669 124 0 0 chr1 8333281 8333370 -273860294 - AluJ/FLAM SINE Alu -222 90 2 183 304 51 13 chr1 8333443 8333522 -273860142 + L2 LINE L2 3169 3250 -22 382 200 35 12 chr1 8333526 8333611 -273860053 - MIR SINE MIR -12 250 164 615 278 124 51 chr1 8333923 8334351 -273859313 - LTR41 LTR ERVL -6 767 309 980 166 29 6 chr1 8334388 8334563 -273859101 - LTR41 LTR ERVL -594 179 1 250 280 220 0 chr1 8334576 8334694 -273858970 + L2 LINE L2 2427 2570 -744 45 19 0 0 chr1 8334726 8334778 -273858886 + AT_rich Low_complexity Low_complexity 1 52 0 221 234 8 153 chr1 8334821 8334945 -273858719 + L2 LINE L2 2916 3021 -251 5011 151 61 15 chr1 8335063 8336110 -273857554 - Tigger3b DNA MER2_type -57 1175 3 263 271 59 93 chr1 8336144 8336262 -273857402 + L2 LINE L2 3154 3267 -5 2215 135 10 56 chr1 8336268 8336661 -273857003 + THE1C LTR MaLR 1 375 0 1718 119 0 140 chr1 8337436 8337772 -273855892 + AluJb SINE Alu 13 301 -11 1030 176 0 12 chr1 8337999 8338169 -273855495 + AluJo SINE Alu 1 168 -144 1621 134 94 29 chr1 8338171 8338446 -273855218 - AluSx SINE Alu -19 293 1 783 255 98 57 chr1 8338570 8338938 -273854726 + L2 LINE L2 2930 3312 -1 2119 169 42 0 chr1 8339943 8340303 -273853361 + THE1C LTR MaLR 1 375 0 1657 189 17 0 chr1 8340673 8340969 -273852695 + AluJo SINE Alu 1 301 -11 276 340 0 10 chr1 8341255 8341358 -273852306 + MLT1K LTR MaLR 185 286 -302 988 157 45 0 chr1 8341361 8341539 -273852125 - MER47A DNA MER2_type -177 189 4 189 194 75 32 chr1 8341622 8341715 -273851949 - L2 LINE L2 -358 2914 2818 349 143 13 13 chr1 8341733 8341810 -273851854 + GA-rich Low_complexity Low_complexity 1 77 0 2356 59 35 0 chr1 8341898 8342186 -273851478 - AluY SINE Alu -13 298 1 2158 100 0 21 chr1 8342672 8342963 -273850701 - AluSx SINE Alu -27 285 1 430 331 24 24 chr1 8342999 8343168 -273850496 - MIR SINE MIR -58 204 36 647 224 22 92 chr1 8343857 8344085 -273849579 - MIR SINE MIR 0 262 51 487 311 104 65 chr1 8344156 8344755 -273848909 - L2 LINE L2 0 3313 2667 2008 152 3 0 chr1 8344755 8345058 -273848606 + AluSx SINE Alu 1 304 -8 487 311 104 65 chr1 8345058 8345112 -273848552 - L2 LINE L2 -646 2667 2617 221 231 115 0 chr1 8345114 8345166 -273848498 + L2 LINE L2 3256 3313 0 281 282 13 0 chr1 8346162 8346240 -273847424 - MIR SINE MIR -21 241 163 544 197 249 28 chr1 8346867 8347080 -273846584 - MIR SINE MIR 0 262 3 21 0 0 0 chr1 8347894 8347915 -273845749 + AT_rich Low_complexity Low_complexity 1 21 0 493 196 181 7 chr1 8350318 8350456 -273843208 - MER69A DNA AcHobo -15 162 1 946 134 15 0 chr1 8350668 8350802 -273842862 + AluJo SINE Alu 1 136 -176 807 191 7 15 chr1 8350899 8351035 -273842629 + AluJo SINE Alu 1 135 -177 2219 113 10 3 chr1 8351695 8351997 -273841667 + AluSq SINE Alu 1 304 -9 2454 132 58 127 chr1 8352699 8352977 -273840687 + L1MA8 LINE L1 5711 6007 -284 1993 114 14 3 chr1 8352977 8353266 -273840398 - AluSg SINE Alu -18 292 1 1560 135 36 32 chr1 8353273 8353525 -273840139 - AluJo SINE Alu -11 301 49 2454 132 58 127 chr1 8353525 8353859 -273839805 + L1MA8 LINE L1 6013 6288 -3 692 154 9 0 chr1 8353908 8354018 -273839646 + FLAM_A SINE Alu 28 138 -4 351 0 0 0 chr1 8354724 8354763 -273838901 + (CA)n Simple_repeat Simple_repeat 2 40 0 2454 73 0 3 chr1 8354911 8355212 -273838452 - AluSq SINE Alu -13 300 1 259 167 0 0 chr1 8355503 8355551 -273838113 - Alu SINE Alu -4 298 251 696 332 23 0 chr1 8355740 8355996 -273837668 - MIR SINE MIR 0 262 1 2333 99 0 13 chr1 8356521 8356833 -273836831 + AluSp SINE Alu 1 308 -5 279 296 34 126 chr1 8356976 8357270 -273836394 + L2 LINE L2 3005 3271 -1 2033 138 0 7 chr1 8358236 8358541 -273835123 + AluSx SINE Alu 1 303 -9 2349 81 0 7 chr1 8358544 8358841 -273834823 + AluSc SINE Alu 1 295 -14 215 294 141 0 chr1 8359454 8359539 -273834125 - L2 LINE L2 -207 3065 2969 3947 181 48 19 chr1 8359606 8360412 -273833252 + L1MB8 LINE L1 5349 6178 0 2070 131 10 13 chr1 8360422 8360558 -273833106 + AluSq SINE Alu 1 136 -177 2321 89 0 0 chr1 8360558 8360849 -273832815 + AluSc SINE Alu 2 292 -17 2070 131 10 13 chr1 8360849 8361026 -273832638 + AluSq SINE Alu 136 313 0 2066 135 3 22 chr1 8361144 8361462 -273832202 + AluSx SINE Alu 1 312 0 186 243 103 96 chr1 8362019 8362155 -273831509 - L2 LINE L2 -1842 1472 1336 1745 183 10 16 chr1 8362206 8362518 -273831146 + AluJb SINE Alu 1 310 -2 23 0 0 0 chr1 8362562 8362585 -273831079 + AT_rich Low_complexity Low_complexity 1 23 0 2000 110 0 27 chr1 8362585 8362885 -273830779 + AluSx SINE Alu 21 312 0 1034 213 56 0 chr1 8363325 8363522 -273830142 + MER3 DNA MER1_type 2 209 0 782 211 60 22 chr1 8363830 8364015 -273829649 + MER58A DNA MER1_type 1 192 -32 1618 167 24 17 chr1 8364376 8364664 -273829000 - AluJo SINE Alu -22 290 1 2249 118 0 3 chr1 8364670 8364976 -273828688 - AluSx SINE Alu -7 305 1 28 0 0 0 chr1 8365187 8365215 -273828449 + AT_rich Low_complexity Low_complexity 1 28 0 271 275 296 16 chr1 8365352 8365541 -273828123 + MIR SINE MIR 12 253 -9 756 323 33 25 chr1 8365574 8365967 -273827697 + L1MC4a LINE L1 5548 5943 -1865 2125 111 10 7 chr1 8366128 8366425 -273827239 + AluSx SINE Alu 1 298 -14 2482 74 0 0 chr1 8366515 8366826 -273826838 + AluY SINE Alu 1 311 0 276 189 63 21 chr1 8366950 8367045 -273826619 + L1ME4a LINE L1 5916 6014 -107 211 222 0 0 chr1 8367046 8367082 -273826582 + L2 LINE L2 3199 3234 -79 2088 127 3 16 chr1 8367379 8367687 -273825977 + AluSx SINE Alu 1 304 -8 1923 157 13 3 chr1 8367693 8367993 -273825671 + AluSx SINE Alu 1 303 -9 799 176 23 0 chr1 8368299 8368430 -273825234 + AluJb SINE Alu 2 135 -177 2168 108 0 0 chr1 8368430 8368718 -273824946 + AluSg SINE Alu 1 288 -22 2414 72 3 3 chr1 8369234 8369540 -273824124 - AluSp SINE Alu -7 306 1 2615 65 7 0 chr1 8369838 8370145 -273823519 - AluSc SINE Alu 0 309 1 1583 192 0 38 chr1 8370176 8370489 -273823175 + AluJo SINE Alu 1 301 -11 914 266 5 5 chr1 8370674 8370881 -273822783 - MIR SINE MIR -54 208 2 1765 183 3 0 chr1 8371188 8371483 -273822181 - AluSx SINE Alu -16 296 1 1808 138 6 55 chr1 8371597 8371923 -273821741 - AluJb SINE Alu -2 310 1 2453 70 3 7 chr1 8372420 8372721 -273820943 - AluY SINE Alu -11 300 1 208 281 123 9 chr1 8372833 8372947 -273820717 + MIR SINE MIR 74 200 -62 1531 169 4 0 chr1 8373444 8373686 -273819978 + AluJb SINE Alu 4 246 -66 1353 139 15 0 chr1 8373739 8373940 -273819724 - AluSg/x SINE Alu -15 295 92 1219 246 91 9 chr1 8375449 8375846 -273817818 - MLT1K LTR MaLR -109 479 2 265 190 17 0 chr1 8375865 8375923 -273817741 + MIR SINE MIR 68 126 -82 1977 129 31 3 chr1 8376752 8377038 -273816626 + AluSx SINE Alu 1 294 -18 967 132 11 6 chr1 8377044 8377218 -273816446 + GA-rich Low_complexity Low_complexity 1 175 0 1133 211 62 62 chr1 8377493 8377559 -273816105 - MLT1C LTR MaLR -2 465 400 2175 122 0 3 chr1 8377559 8377870 -273815794 + AluSx SINE Alu 1 310 -2 1133 211 62 62 chr1 8377870 8378192 -273815472 - MLT1C LTR MaLR -66 401 77 2231 105 0 26 chr1 8378203 8378339 -273815325 + AluSx SINE Alu 1 139 -173 2150 105 7 16 chr1 8378339 8378643 -273815021 + AluSg SINE Alu 1 301 -9 2231 105 0 26 chr1 8378643 8378810 -273814854 + AluSx SINE Alu 139 296 -16 682 67 11 0 chr1 8378816 8378906 -273814758 + AluY SINE Alu 2 92 -219 1683 74 0 0 chr1 8378959 8379162 -273814502 + AluY SINE Alu 99 301 -10 1050 169 43 0 chr1 8379165 8379349 -273814315 - MLT1A1 LTR MaLR -4 361 170 1154 101 35 0 chr1 8379388 8379557 -273814107 - L1PA8 LINE L1 -3 6169 5995 829 114 8 38 chr1 8379557 8379688 -273813976 - FRAM SINE Alu -8 168 42 625 218 35 0 chr1 8379688 8379830 -273813834 - MLT1A1 LTR MaLR -218 147 1 1474 308 49 48 chr1 8379896 8380182 -273813482 - L2 LINE L2 -352 2962 2678 2220 102 7 3 chr1 8380182 8380476 -273813188 - AluSx SINE Alu -12 300 6 1474 308 49 48 chr1 8380476 8380842 -273812822 - L2 LINE L2 -636 2678 2306 2599 98 17 3 chr1 8380842 8381201 -273812463 - THE1B LTR MaLR 0 364 1 1474 308 49 48 chr1 8381201 8381423 -273812241 - L2 LINE L2 -1008 2306 2086 1757 120 71 0 chr1 8381469 8381736 -273811928 - AluSx SINE Alu -6 306 21 1628 163 0 80 chr1 8381741 8381928 -273811736 - AluJb SINE Alu -12 300 148 1906 135 10 10 chr1 8381928 8382216 -273811448 - AluSx SINE Alu -24 288 1 1628 163 0 80 chr1 8382216 8382354 -273811310 - AluJb SINE Alu -164 148 1 229 211 39 0 chr1 8382355 8382407 -273811257 - AluJo SINE Alu -167 135 82 2336 107 7 0 chr1 8384087 8384397 -273809267 - AluSx SINE Alu 0 312 1 2235 115 0 13 chr1 8385238 8385550 -273808114 + AluSq SINE Alu 1 308 -5 1632 149 7 53 chr1 8385573 8385719 -273807945 - AluJo SINE Alu -44 268 140 2315 97 7 0 chr1 8385719 8386017 -273807647 - AluSq SINE Alu -13 300 1 1632 149 7 53 chr1 8386017 8386151 -273807513 - AluJo SINE Alu -172 140 1 938 179 28 6 chr1 8386158 8386337 -273807327 + AluJb SINE Alu 112 294 -18 2024 93 11 7 chr1 8386340 8386619 -273807045 + AluSg SINE Alu 1 280 -30 1795 127 4 0 chr1 8386668 8386913 -273806751 + AluSx SINE Alu 1 246 -66 293 81 0 0 chr1 8387015 8387052 -273806612 - Alu SINE Alu -261 41 5 1147 45 0 8 chr1 8387157 8387290 -273806374 + AluSg SINE Alu 3 134 -176 2188 104 10 3 chr1 8387290 8387588 -273806076 + AluSx SINE Alu 1 300 -12 347 257 0 0 chr1 8387588 8387658 -273806006 + L2 LINE L2 3197 3266 -47 1186 139 17 6 chr1 8387821 8388001 -273805663 + AluSx SINE Alu 1 182 -130 300 297 27 18 chr1 8388031 8388142 -273805522 + MIR SINE MIR 27 138 -70 1670 156 31 59 chr1 8388849 8388985 -273804679 + AluJo SINE Alu 1 139 -173 2177 116 0 7 chr1 8388985 8389279 -273804385 + AluSc SINE Alu 1 292 -17 1670 156 31 59 chr1 8389279 8389462 -273804202 + AluJo SINE Alu 139 311 -1 551 286 82 11 chr1 8389464 8389646 -273804018 + MIR SINE MIR 57 251 -11 2170 245 75 51 chr1 8389921 8390533 -273803131 + L2 LINE L2 1732 2328 -986 2193 122 0 0 chr1 8390533 8390829 -273802835 + AluSx SINE Alu 1 296 -16 2170 245 75 51 chr1 8390829 8390961 -273802703 + L2 LINE L2 2328 2455 -859 1792 180 0 3 chr1 8390961 8391250 -273802414 + AluJb SINE Alu 1 288 -24 2170 245 75 51 chr1 8391250 8391462 -273802202 + L2 LINE L2 2455 2712 -602 512 174 51 0 chr1 8391465 8391563 -273802101 + AluJo SINE Alu 34 136 -176 340 152 76 13 chr1 8391584 8391663 -273802001 + L2 LINE L2 2702 2785 -529 1041 159 30 25 chr1 8391809 8392010 -273801654 + MLT1C LTR MaLR 266 467 0 998 272 72 59 chr1 8392010 8392466 -273801198 + L2 LINE L2 2848 3309 -4 2284 103 3 0 chr1 8393541 8393831 -273799833 - AluSq SINE Alu -22 291 1 213 298 46 23 chr1 8393896 8394027 -273799637 + L2 LINE L2 2537 2670 -644 798 276 95 21 chr1 8394866 8395277 -273798387 + L2 LINE L2 2664 3105 -208 2184 112 0 7 chr1 8395456 8395759 -273797905 + AluSx SINE Alu 1 301 -11 1572 118 0 0 chr1 8395808 8396019 -273797645 + AluJb SINE Alu 84 294 -18 24 53 0 0 chr1 8396199 8396237 -273797427 + AT_rich Low_complexity Low_complexity 1 38 0 2351 93 0 3 chr1 8396272 8396572 -273797092 - AluSg SINE Alu -11 299 1 885 126 0 15 chr1 8397072 8397207 -273796457 + AluJo SINE Alu 1 133 -169 38 0 0 0 chr1 8397207 8397245 -273796419 + AT_rich Low_complexity Low_complexity 1 38 0 1970 142 0 7 chr1 8398523 8398805 -273794859 - AluSq SINE Alu -33 280 1 293 326 68 30 chr1 8399280 8399412 -273794252 + L2 LINE L2 3133 3269 -3 968 169 34 11 chr1 8399859 8400037 -273793627 + AluJo SINE Alu 131 312 0 2497 87 0 0 chr1 8400794 8401105 -273792559 + AluSx SINE Alu 1 311 -1 1912 119 11 14 chr1 8401720 8401998 -273791666 + AluSx SINE Alu 19 295 -17 1864 56 158 11 chr1 8402035 8402301 -273791363 + AluY SINE Alu 1 305 -6 695 197 0 0 chr1 8402534 8402683 -273790981 + FLAM_C SINE Alu 1 149 0 253 220 17 34 chr1 8402685 8402744 -273790920 + FLAM_A SINE Alu 1 58 -75 997 201 0 16 chr1 8402766 8402950 -273790714 - AluJb SINE Alu -46 266 86 2182 94 7 0 chr1 8402966 8403243 -273790421 - AluSg SINE Alu -31 279 1 660 188 8 8 chr1 8403249 8403366 -273790298 - FLAM_A SINE Alu -10 132 16 2490 84 3 0 chr1 8403620 8403928 -273789736 + AluSp SINE Alu 1 309 -4 461 130 130 11 chr1 8404493 8404585 -273789079 - HY1 scRNA scRNA -2 110 8 1102 197 60 77 chr1 8405011 8405310 -273788354 + AluSx SINE Alu 2 295 -7 926 154 0 0 chr1 8405896 8406032 -273787632 + AluJo SINE Alu 1 136 -176 2135 111 0 19 chr1 8406032 8406348 -273787316 + AluSx SINE Alu 1 310 -2 2423 93 0 0 chr1 8406609 8406911 -273786753 - AluSx SINE Alu -10 302 1 2230 109 10 0 chr1 8406911 8407213 -273786451 - AluSq SINE Alu -8 305 1 32 0 0 0 chr1 8407440 8407472 -273786192 + AT_rich Low_complexity Low_complexity 1 32 0 1000 140 0 67 chr1 8407473 8407577 -273786087 + FRAM SINE Alu 1 83 -229 1455 58 85 58 chr1 8407577 8407715 -273785949 - MER30 DNA MER1_type 0 230 82 2297 104 0 19 chr1 8407715 8408033 -273785631 - AluSx SINE Alu 0 312 1 1455 58 85 58 chr1 8408033 8408118 -273785546 - MER30 DNA MER1_type -148 82 1 1000 140 0 67 chr1 8408118 8408192 -273785472 + FRAM SINE Alu 83 160 -16 270 173 49 25 chr1 8408207 8408288 -273785376 + L1MB7 LINE L1 6100 6182 -2 293 213 0 0 chr1 8408390 8408451 -273785213 + L1MC/D LINE L1 5376 5436 -2372 780 145 123 7 chr1 8408456 8408594 -273785070 + FRAM SINE Alu 1 154 -12 2110 118 7 0 chr1 8408603 8408890 -273784774 + AluSx SINE Alu 1 289 -23 2004 148 0 3 chr1 8408896 8409187 -273784477 + AluJb SINE Alu 1 290 -22 2372 94 3 0 chr1 8409190 8409487 -273784177 - AluSp SINE Alu -15 298 1 415 299 159 9 chr1 8409526 8409847 -273783817 + L1MC/D LINE L1 5443 5811 -1997 27 0 0 0 chr1 8409994 8410021 -273783643 + AT_rich Low_complexity Low_complexity 1 27 0 210 324 29 7 chr1 8410375 8410514 -273783150 + L2 LINE L2 2918 3059 -213 29 28 0 0 chr1 8410968 8411004 -273782660 + AT_rich Low_complexity Low_complexity 1 36 0 2191 97 27 10 chr1 8411113 8411411 -273782253 + AluSc SINE Alu 1 303 -6 1588 163 80 7 chr1 8411504 8411780 -273781884 - AluJb SINE Alu -16 296 1 1483 278 84 8 chr1 8412370 8412845 -273780819 + MLT1J LTR MaLR 1 511 0 1156 115 35 11 chr1 8412915 8413089 -273780575 - AluSg/x SINE Alu 0 310 133 1907 162 0 14 chr1 8413149 8413285 -273780379 + AluSq SINE Alu 1 137 -176 2089 135 3 3 chr1 8413285 8413596 -273780068 + AluSq SINE Alu 1 311 -2 1907 162 0 14 chr1 8413596 8413755 -273779909 + AluSq SINE Alu 137 292 -21 2352 110 3 0 chr1 8413760 8414069 -273779595 - AluSq SINE Alu -3 310 1 1741 124 51 7 chr1 8414165 8414459 -273779205 + AluSx SINE Alu 1 306 0 190 267 188 30 chr1 8414539 8414640 -273779024 - L2 LINE L2 0 3313 3197 1846 162 0 7 chr1 8414973 8415270 -273778394 - AluJo SINE Alu -17 295 1 975 168 0 23 chr1 8415914 8416087 -273777577 + AluJb SINE Alu 137 305 -7 864 209 37 37 chr1 8416361 8416576 -273777088 - MIR SINE MIR 0 262 48 2498 85 0 3 chr1 8416772 8417077 -273776587 + AluY SINE Alu 1 304 -7 432 229 100 53 chr1 8417459 8417629 -273776035 + MER104 DNA MER2_type 1 178 -2 2047 105 22 0 chr1 8417895 8418222 -273775442 - AluSx SINE Alu 0 333 1 42 0 0 19 chr1 8418227 8418248 -273775416 + AT_rich Low_complexity Low_complexity 1 21 -31 1896 167 0 3 chr1 8418248 8418535 -273775129 + AluJb SINE Alu 3 288 -24 42 0 0 19 chr1 8418535 8418566 -273775098 + AT_rich Low_complexity Low_complexity 21 52 0 200 200 25 0 chr1 8418813 8418853 -273774811 + (CAGG)n Simple_repeat Simple_repeat 3 43 0 1818 158 17 20 chr1 8419245 8419537 -273774127 + AluJo SINE Alu 1 291 -21 2168 123 4 0 chr1 8420286 8420587 -273773077 + AluSx SINE Alu 2 288 -24 2248 114 3 3 chr1 8421527 8421835 -273771829 - AluSx SINE Alu -4 308 1 327 85 0 0 chr1 8423750 8423797 -273769867 + (TG)n Simple_repeat Simple_repeat 2 48 0 23 92 0 0 chr1 8425150 8425215 -273768449 + GC_rich Low_complexity Low_complexity 1 65 0 273 57 0 0 chr1 8425734 8425769 -273767895 + (T)n Simple_repeat Simple_repeat 1 35 0 30 45 0 0 chr1 8425955 8425999 -273767665 + GC_rich Low_complexity Low_complexity 1 44 0 2549 60 3 0 chr1 8426813 8427111 -273766553 - AluSp SINE Alu -14 299 1 1772 119 0 0 chr1 8427466 8427701 -273765963 - AluSg/x SINE Alu 0 310 76 361 268 111 39 chr1 8428076 8428162 -273765502 - MIR SINE MIR -13 249 171 2465 84 10 0 chr1 8428162 8428472 -273765192 - AluSp SINE Alu 0 313 1 361 268 111 39 chr1 8428472 8428538 -273765126 - MIR SINE MIR -91 171 86 24 32 0 0 chr1 8428900 8428931 -273764733 + AT_rich Low_complexity Low_complexity 1 31 0 1435 166 4 17 chr1 8428932 8429167 -273764497 + AluJb SINE Alu 67 298 -14 381 332 65 18 chr1 8429184 8429401 -273764263 - L1M4 LINE L1 -905 5241 5015 23 33 0 0 chr1 8429522 8429552 -273764112 + AT_rich Low_complexity Low_complexity 1 30 0 2312 99 3 0 chr1 8430197 8430491 -273763173 + AluSq SINE Alu 1 295 -18 261 57 0 0 chr1 8431310 8431345 -273762319 + (A)n Simple_repeat Simple_repeat 1 35 0 2318 93 3 3 chr1 8431527 8431828 -273761836 + AluSx SINE Alu 1 301 -11 714 138 32 0 chr1 8431877 8432000 -273761664 + L1MC2 LINE L1 5727 5853 -480 803 154 0 0 chr1 8432001 8432124 -273761540 + AluJ SINE Alu 2 124 -188 25 0 0 0 chr1 8432135 8432160 -273761504 + AT_rich Low_complexity Low_complexity 1 25 0 1272 146 21 90 chr1 8432160 8432448 -273761216 + L1MC2 LINE L1 5839 6106 -238 1062 119 6 36 chr1 8432448 8432616 -273761048 + AluJ SINE Alu 132 294 -18 2095 118 17 3 chr1 8432616 8432903 -273760761 + AluSx SINE Alu 1 291 -21 2499 68 0 7 chr1 8432905 8433215 -273760449 + AluSg1 SINE Alu 1 308 -1 950 177 48 0 chr1 8433215 8433401 -273760263 + L1MC2 LINE L1 6137 6331 -13 2130 78 7 68 chr1 8433401 8433708 -273759956 + AluSq SINE Alu 1 288 -25 1111 169 62 71 chr1 8434344 8434479 -273759185 - MER44D DNA MER2_type -1886 605 470 2351 101 0 19 chr1 8434479 8434795 -273758869 + AluSg SINE Alu 1 310 0 1111 169 62 71 chr1 8434795 8434838 -273758826 - MER44D DNA MER2_type -2021 470 428 1929 160 0 3 chr1 8434838 8435131 -273758533 + AluJb SINE Alu 5 296 -16 1111 169 62 71 chr1 8435131 8435154 -273758510 - MER44D DNA MER2_type -2063 428 406 1750 144 26 49 chr1 8435154 8435297 -273758367 + AluJo SINE Alu 1 146 -166 1933 126 3 18 chr1 8435297 8435602 -273758062 + AluSx SINE Alu 1 301 0 1750 144 26 49 chr1 8435602 8435762 -273757902 + AluJo SINE Alu 146 298 -14 1111 169 62 71 chr1 8435762 8435896 -273757768 - MER44D DNA MER2_type -2085 406 1 1973 144 10 0 chr1 8435953 8436245 -273757419 + AluSx SINE Alu 16 310 -2 1141 162 6 6 chr1 8436245 8436424 -273757240 + AluJb SINE Alu 134 312 0 2203 100 7 20 chr1 8436593 8436894 -273756770 + AluSx SINE Alu 1 297 -15 2365 66 0 3 chr1 8437003 8437290 -273756374 + AluY SINE Alu 18 303 -8 2411 281 39 37 chr1 8437437 8438121 -273755543 + L2 LINE L2 989 1677 -1637 2382 111 0 0 chr1 8438121 8438428 -273755236 + AluSq SINE Alu 1 307 -6 2411 281 39 37 chr1 8438428 8438644 -273755020 + L2 LINE L2 1677 1891 -1423 2039 100 28 21 chr1 8438654 8438945 -273754719 + AluSx SINE Alu 10 302 -10 816 144 16 124 chr1 8439356 8439507 -273754157 + L1MCa LINE L1 352 479 -5947 2254 111 3 0 chr1 8439507 8439804 -273753860 - AluSp SINE Alu -15 298 1 816 144 16 124 chr1 8439804 8439846 -273753818 + L1MCa LINE L1 479 524 -5902 620 158 61 0 chr1 8439846 8439960 -273753704 + MER7A DNA MER2_type 1 119 -227 876 184 6 28 chr1 8439962 8440141 -273753523 + AluJb SINE Alu 137 311 -1 1401 209 43 7 chr1 8440184 8440461 -273753203 + AluJb SINE Alu 17 303 -9 226 214 18 0 chr1 8440461 8440517 -273753147 + L1MCa LINE L1 1779 1835 -4591 2351 113 3 0 chr1 8440519 8440828 -273752836 - AluSx SINE Alu -2 310 1 198 0 0 0 chr1 8440834 8440856 -273752808 + (TTTTTG)n Simple_repeat Simple_repeat 3 24 0 1545 197 0 35 chr1 8440857 8441174 -273752490 + AluJb SINE Alu 3 309 0 2012 152 3 3 chr1 8441175 8441485 -273752179 + AluSx SINE Alu 2 311 -1 484 135 10 0 chr1 8441485 8441589 -273752075 + L1MCa LINE L1 1821 1925 -4501 2376 80 0 20 chr1 8441711 8442012 -273751652 + AluY SINE Alu 1 295 -16 2111 109 56 0 chr1 8442142 8442427 -273751237 - AluSx SINE Alu -11 301 1 2276 95 7 0 chr1 8442459 8442754 -273750910 - AluSg SINE Alu -13 297 1 929 186 6 6 chr1 8442754 8442921 -273750743 - AluJb SINE Alu -15 297 131 1269 127 184 0 chr1 8443357 8443636 -273750028 - pTR5 LTR ERV1 -571 1692 57 17785 75 5 7 chr1 8443644 8446075 -273747589 - HERV9 LTR ERV1 0 8399 5972 2058 117 37 7 chr1 8446159 8446458 -273747206 - AluSc SINE Alu -1 308 1 976 87 0 8 chr1 8446485 8446612 -273747052 - AluSp/q SINE Alu -18 295 170 21 36 0 0 chr1 8446634 8446662 -273747002 + AT_rich Low_complexity Low_complexity 1 28 0 598 135 0 0 chr1 8446842 8446931 -273746733 - LTR8 LTR ERV1 0 691 603 2085 143 7 0 chr1 8446931 8447231 -273746433 + AluSx SINE Alu 1 302 -10 206 170 0 21 chr1 8447234 8447281 -273746383 + A-rich Low_complexity Low_complexity 3 48 0 296 161 0 0 chr1 8447285 8447341 -273746323 - LTR8 LTR ERV1 -73 618 563 3549 102 33 38 chr1 8448545 8448599 -273745065 - LTR8 LTR ERV1 -113 578 525 2204 88 29 39 chr1 8448599 8448791 -273744873 - AluSg SINE Alu -5 305 116 2534 43 33 0 chr1 8448791 8449092 -273744572 - AluY SINE Alu 0 311 1 2204 88 29 39 chr1 8449092 8449207 -273744457 - AluSg SINE Alu -194 116 1 3549 102 33 38 chr1 8449207 8449733 -273743931 - LTR8 LTR ERV1 -166 525 1 581 251 70 32 chr1 8449736 8449923 -273743741 + L2 LINE L2 3120 3313 0 226 227 196 0 chr1 8450081 8450178 -273743486 - MER34 LTR ERV1 -57 485 370 827 213 34 78 chr1 8450278 8450546 -273743118 + LTR8 LTR ERV1 1 256 -435 2501 60 7 3 chr1 8450580 8450878 -273742786 + AluSp SINE Alu 1 299 -14 1011 187 0 21 chr1 8450888 8451075 -273742589 - AluJb SINE Alu -15 297 115 2388 92 0 7 chr1 8451076 8451381 -273742283 + AluY SINE Alu 1 303 -8 1527 83 5 0 chr1 8451386 8451590 -273742074 - MER51B LTR ERV1 -125 252 48 180 0 0 0 chr1 8451600 8451620 -273742044 + (T)n Simple_repeat Simple_repeat 1 20 0 246 49 0 0 chr1 8451620 8451661 -273742003 + Alu SINE Alu 260 300 0 212 143 24 0 chr1 8452091 8452133 -273741531 + (TA)n Simple_repeat Simple_repeat 1 43 0 215 61 30 0 chr1 8452133 8452166 -273741498 + (TG)n Simple_repeat Simple_repeat 2 35 0 354 288 34 14 chr1 8452302 8452448 -273741216 - L3 LINE CR1 -199 1378 1230 1690 191 10 16 chr1 8452580 8452884 -273740780 - AluJb SINE Alu -6 306 5 2580 62 7 0 chr1 8452922 8453230 -273740434 - AluY SINE Alu -1 310 1 2442 68 14 0 chr1 8453232 8453525 -273740139 - AluSq SINE Alu -16 297 1 1744 183 3 3 chr1 8453528 8453823 -273739841 - AluJo SINE Alu -17 295 1 368 248 21 78 chr1 8453827 8453951 -273739713 + L2 LINE L2 2513 2642 -672 1764 172 14 7 chr1 8453951 8454242 -273739422 + AluJo SINE Alu 1 293 -19 2233 130 0 0 chr1 8454242 8454550 -273739114 + AluSg SINE Alu 1 308 -2 368 248 21 78 chr1 8454550 8454565 -273739099 + L2 LINE L2 2640 2645 -669 622 246 0 0 chr1 8454807 8454941 -273738723 - MER58A DNA MER1_type -4 220 87 1234 148 9 32 chr1 8454941 8455157 -273738507 + AluJb SINE Alu 87 297 -15 357 205 141 0 chr1 8455157 8455235 -273738429 - MER58A DNA MER1_type -18 89 1 1052 220 81 23 chr1 8455362 8455621 -273738043 - MLT1A1 LTR MaLR -16 349 76 2070 133 10 10 chr1 8455621 8455923 -273737741 - AluSx SINE Alu -10 302 1 308 302 64 87 chr1 8455960 8456132 -273737532 - L3 LINE CR1 -1012 565 398 2168 104 10 0 chr1 8456262 8456550 -273737114 - AluSq SINE Alu -22 291 1 180 316 89 13 chr1 8457030 8457109 -273736555 + MIR SINE MIR 163 247 -15 2187 124 3 7 chr1 8457111 8457418 -273736246 - AluSx SINE Alu -6 306 1 2216 122 0 13 chr1 8458260 8458572 -273735092 + AluSq SINE Alu 1 308 -5 1639 161 7 52 chr1 8458590 8458741 -273734923 - AluJo SINE Alu -39 273 140 2367 97 3 0 chr1 8458741 8459040 -273734624 - AluSq SINE Alu -13 300 1 1639 161 7 52 chr1 8459040 8459174 -273734490 - AluJo SINE Alu -172 140 1 186 43 0 0 chr1 8459327 8459350 -273734314 + (TCTCCC)n Simple_repeat Simple_repeat 1 23 0 8868 49 140 14 chr1 8459352 8460536 -273733128 + SVA Other Other 53 1385 -1 380 92 184 0 chr1 8460537 8460613 -273733051 + MER41A LTR ERV1 383 472 -82 186 43 0 0 chr1 8460614 8460637 -273733027 + (A)n Simple_repeat Simple_repeat 1 23 0 2034 122 0 69 chr1 8460756 8461091 -273732573 - AluSx SINE Alu 0 312 1 213 146 0 0 chr1 8461117 8461165 -273732499 + (TG)n Simple_repeat Simple_repeat 1 48 0 686 132 15 73 chr1 8461165 8461301 -273732363 - FRAM SINE Alu -9 167 40 2543 75 0 0 chr1 8461840 8462148 -273731516 - AluSx SINE Alu -4 308 1 1925 139 20 3 chr1 8462623 8462918 -273730746 + AluSx SINE Alu 1 300 -12 2770 167 12 37 chr1 8463603 8464173 -273729491 + L1MB5 LINE L1 5584 6139 -35 2308 89 10 7 chr1 8464180 8464473 -273729191 + AluSq SINE Alu 6 299 -14 2122 118 7 3 chr1 8464486 8464791 -273728873 + AluJb SINE Alu 7 312 0 2281 104 3 0 chr1 8464795 8465094 -273728570 + AluSg SINE Alu 3 302 -8 883 137 0 0 chr1 8465094 8465218 -273728446 + FLAM_C SINE Alu 12 135 -8 1104 89 0 0 chr1 8465539 8465674 -273727990 + AluSq/x SINE Alu 1 135 -178 2323 112 0 13 chr1 8465674 8465988 -273727676 + AluSx SINE Alu 1 310 -2 1013 208 19 102 chr1 8466291 8466613 -273727051 + AluJo SINE Alu 1 295 -7 2313 100 7 0 chr1 8466712 8467012 -273726652 + AluSx SINE Alu 11 312 0 1667 163 0 80 chr1 8468745 8468883 -273724781 + AluJb SINE Alu 1 148 -164 1921 135 10 10 chr1 8468883 8469171 -273724493 + AluSx SINE Alu 1 288 -24 1667 163 0 80 chr1 8469171 8469358 -273724306 + AluJb SINE Alu 148 300 -12 1784 120 71 0 chr1 8469363 8469630 -273724034 + AluSx SINE Alu 21 306 -6 1461 313 66 28 chr1 8469676 8469898 -273723766 + L2 LINE L2 2086 2298 -1016 2630 98 17 3 chr1 8469898 8470257 -273723407 + THE1B LTR MaLR 1 364 0 1461 313 66 28 chr1 8470257 8470623 -273723041 + L2 LINE L2 2298 2688 -626 2268 106 7 0 chr1 8470623 8470916 -273722748 + AluSx SINE Alu 6 300 -12 1461 313 66 28 chr1 8470916 8471202 -273722462 + L2 LINE L2 2688 2962 -352 651 217 28 0 chr1 8471268 8471411 -273722253 + MLT1A1 LTR MaLR 1 147 -218 870 111 0 62 chr1 8471411 8471543 -273722121 + FRAM SINE Alu 1 30 -146 1036 118 35 0 chr1 8471543 8471712 -273721952 + L1PA8 LINE L1 5995 6169 -3 870 111 0 62 chr1 8471712 8471723 -273721941 + FRAM SINE Alu 30 40 0 998 169 43 0 chr1 8471751 8471935 -273721729 + MLT1A1 LTR MaLR 170 361 -4 1698 74 0 0 chr1 8471938 8472141 -273721523 - AluY SINE Alu -10 301 99 803 54 0 0 chr1 8472194 8472286 -273721378 - AluY SINE Alu -219 92 1 2268 106 0 17 chr1 8472291 8472455 -273721209 - AluSx SINE Alu -16 296 138 2186 108 7 16 chr1 8472455 8472762 -273720902 - AluSg SINE Alu -6 304 1 2268 106 0 17 chr1 8472762 8472898 -273720766 - AluSx SINE Alu -174 138 1 1095 221 57 57 chr1 8472909 8473231 -273720433 + MLT1C LTR MaLR 77 401 -66 2219 122 0 3 chr1 8473231 8473542 -273720122 - AluSx SINE Alu -2 310 1 1095 221 57 57 chr1 8473542 8473608 -273720056 + MLT1C LTR MaLR 400 465 -2 949 127 12 6 chr1 8473883 8474049 -273719615 + CT-rich Low_complexity Low_complexity 1 167 0 1999 132 31 3 chr1 8474064 8474351 -273719313 - AluSx SINE Alu -17 295 1 278 190 17 0 chr1 8475180 8475238 -273718426 - MIR SINE MIR -137 125 67 1187 246 91 9 chr1 8475257 8475654 -273718010 + MLT1K LTR MaLR 2 479 -109 2055 119 39 0 chr1 8476594 8476757 -273716907 - AluSx SINE Alu -16 296 141 2165 120 3 10 chr1 8476757 8477056 -273716608 - AluSq SINE Alu -16 297 1 180 0 0 0 chr1 8477062 8477082 -273716582 + (TTG)n Simple_repeat Simple_repeat 2 21 0 2055 119 39 0 chr1 8477082 8477196 -273716468 - AluSx SINE Alu -175 137 1 195 42 0 0 chr1 8477547 8477571 -273716093 + (GCTG)n Simple_repeat Simple_repeat 2 25 0 2387 110 0 0 chr1 8478321 8478631 -273715033 + AluSx SINE Alu 1 310 -2 261 0 0 0 chr1 8479098 8479127 -273714537 + (TAAA)n Simple_repeat Simple_repeat 2 30 0 2208 110 0 35 chr1 8479581 8479898 -273713766 - AluSx SINE Alu -6 306 1 1351 186 121 53 chr1 8479953 8480238 -273713426 + L1M4 LINE L1 4873 5198 -948 1962 155 3 19 chr1 8480238 8480555 -273713109 + AluJo SINE Alu 1 312 0 1351 186 121 53 chr1 8480555 8480699 -273712965 + L1M4 LINE L1 5198 5331 -815 2339 105 0 3 chr1 8480699 8481003 -273712661 + AluSx SINE Alu 1 303 -9 1360 131 80 55 chr1 8481008 8481245 -273712419 + AluJo SINE Alu 55 297 -15 1959 173 20 32 chr1 8481247 8481283 -273712381 + L1M4 LINE L1 5333 5368 -816 1770 163 51 10 chr1 8481283 8481577 -273712087 + AluJb SINE Alu 1 306 -6 1959 173 20 32 chr1 8481577 8481696 -273711968 + L1M4 LINE L1 5368 5487 -697 2447 89 0 0 chr1 8481696 8481999 -273711665 + AluSx SINE Alu 1 303 -9 1959 173 20 32 chr1 8481999 8482281 -273711383 + L1M4 LINE L1 5487 5766 -418 920 140 15 0 chr1 8482288 8482424 -273711240 + FRAM SINE Alu 18 155 -21 333 47 0 0 chr1 8482444 8482487 -273711177 + (GAAA)n Simple_repeat Simple_repeat 2 44 0 941 158 35 12 chr1 8482509 8482680 -273710984 - FRAM SINE Alu -1 175 1 441 268 116 0 chr1 8482802 8482966 -273710698 - L2 LINE L2 -26 3287 3105 2123 65 46 55 chr1 8483215 8483522 -273710142 + AluY SINE Alu 1 304 -7 1067 201 27 5 chr1 8483522 8483746 -273709918 + L1M3 LINE L1 5441 5669 -511 383 111 10 4 chr1 8483746 8483954 -273709710 + AluJo SINE Alu 1 296 -4 280 206 118 81 chr1 8484722 8484788 -273708876 - Charlie8 DNA MER1_type -2219 198 136 1399 175 68 51 chr1 8484788 8484931 -273708733 + AluJo SINE Alu 1 140 -172 2211 98 0 7 chr1 8484931 8485243 -273708421 + AluSg SINE Alu 1 310 0 1399 175 68 51 chr1 8485243 8485390 -273708274 + AluJo SINE Alu 140 297 -15 280 206 118 81 chr1 8485390 8485459 -273708205 - Charlie8 DNA MER1_type -2281 136 58 323 275 158 35 chr1 8485471 8485584 -273708080 + L1ME1 LINE L1 5970 6112 -54 2156 118 5 68 chr1 8485584 8485760 -273707904 + THE1C LTR MaLR 1 186 -189 2375 93 0 10 chr1 8485760 8486073 -273707591 - AluSx SINE Alu -1 311 2 2156 118 5 68 chr1 8486073 8486296 -273707368 + THE1C LTR MaLR 186 375 0 323 275 158 35 chr1 8486296 8486353 -273707311 + L1ME1 LINE L1 6112 6161 -5 2070 124 0 0 chr1 8486436 8486709 -273706955 - AluSx SINE Alu -19 293 21 205 279 13 63 chr1 8486871 8486950 -273706714 - MIR SINE MIR -108 154 80 723 188 85 6 chr1 8487290 8487455 -273706209 - MER5B DNA MER1_type 0 178 1 722 160 128 19 chr1 8487475 8487631 -273706033 - AluJo SINE Alu -20 292 120 2135 131 0 0 chr1 8487637 8487927 -273705737 + AluSx SINE Alu 1 290 -22 606 221 14 0 chr1 8488509 8488649 -273705015 + ERVL-C1 LTR ERVL 5615 5756 -8 516 208 95 135 chr1 8488651 8488817 -273704847 + MLT2C1 LTR ERVL 3 151 -246 2045 133 14 7 chr1 8488817 8489111 -273704553 - AluSx SINE Alu -16 296 1 516 208 95 135 chr1 8489111 8489271 -273704393 + MLT2C1 LTR ERVL 151 316 -81 853 206 13 0 chr1 8489286 8489441 -273704223 - AluJb SINE Alu -26 286 130 2061 128 7 14 chr1 8489626 8489796 -273703868 - AluSx SINE Alu -7 305 136 2397 95 0 0 chr1 8489796 8490092 -273703572 - AluSg SINE Alu -14 296 1 2061 128 7 14 chr1 8490092 8490217 -273703447 - AluSx SINE Alu -176 136 12 189 0 0 0 chr1 8491796 8491817 -273701847 + (A)n Simple_repeat Simple_repeat 1 21 0 1626 114 63 20 chr1 8491825 8492080 -273701584 + AluSx SINE Alu 35 300 -12 600 135 0 0 chr1 8492101 8492197 -273701467 + FRAM SINE Alu 73 168 -8 619 116 0 0 chr1 8493551 8493637 -273700027 - FLAM_C SINE Alu -37 106 21 1452 194 11 29 chr1 8494243 8494521 -273699143 - AluJo SINE Alu -39 273 1 463 271 97 7 chr1 8494670 8494814 -273698850 + MIR SINE MIR 7 163 -99 844 80 36 0 chr1 8495908 8496020 -273697644 + AluSg/x SINE Alu 195 310 -2 677 164 0 62 chr1 8496592 8496720 -273696944 - FLAM_A SINE Alu -12 121 2 354 235 44 88 chr1 8496785 8496921 -273696743 - MIR SINE MIR -71 191 62 1979 94 94 4 chr1 8497468 8497745 -273695919 - AluY SINE Alu -9 302 1 332 256 231 20 chr1 8498388 8498587 -273695077 - MARNA DNA Mariner -184 402 162 1603 167 42 48 chr1 8498592 8498903 -273694761 - AluJb SINE Alu -3 309 1 2271 123 0 0 chr1 8499474 8499775 -273693889 - AluSx SINE Alu -11 301 1 185 138 0 0 chr1 8502153 8502182 -273691482 - MER5A DNA MER1_type -33 156 128 230 254 0 0 chr1 8502243 8502302 -273691362 - Charlie5 DNA MER1_type -27 2585 2527 2187 119 3 0 chr1 8502303 8502596 -273691068 - AluSx SINE Alu -16 296 3 657 186 120 42 chr1 8503080 8503247 -273690417 + L1MC1 LINE L1 6137 6316 -17 2312 109 0 16 chr1 8504209 8504522 -273689142 + AluSx SINE Alu 4 311 -1 749 96 88 0 chr1 8505057 8505182 -273688482 - MER85 DNA T2_type -3 136 1 189 171 0 0 chr1 8505213 8505248 -273688416 + A-rich Low_complexity Low_complexity 1 35 0 703 114 0 61 chr1 8505704 8505836 -273687828 - FLAM_C SINE Alu -9 124 1 273 177 89 25 chr1 8506349 8506428 -273687236 - L1ME1 LINE L1 -117 6049 5966 1000 50 10 5 chr1 8506532 8506732 -273686932 + AluY SINE Alu 2 302 -9 1967 87 66 35 chr1 8506760 8506908 -273686756 - AluSq SINE Alu -13 300 158 1876 85 143 0 chr1 8506908 8507167 -273686497 - AluY SINE Alu -15 296 1 1967 87 66 35 chr1 8507167 8507307 -273686357 - AluSq SINE Alu -155 158 3 2156 60 19 82 chr1 8507681 8507999 -273685665 + AluSp SINE Alu 1 298 -15 2471 81 0 3 chr1 8511209 8511519 -273682145 + AluSg SINE Alu 2 310 0 1362 182 34 51 chr1 8511541 8511837 -273681827 + AluJo SINE Alu 3 293 -19 2142 108 29 32 chr1 8511840 8512154 -273681510 + AluSq SINE Alu 1 313 0 2322 110 3 0 chr1 8512164 8512465 -273681199 + AluSx SINE Alu 1 302 -10 2457 92 3 0 chr1 8512558 8512864 -273680800 - AluY SINE Alu -4 307 1 2196 112 0 16 chr1 8512887 8513190 -273680474 - AluSg SINE Alu -12 298 1 201 39 0 0 chr1 8513190 8513216 -273680448 + (TTTTA)n Simple_repeat Simple_repeat 2 27 0 2008 128 0 3 chr1 8513216 8513498 -273680166 - AluSg SINE Alu -29 281 1 33 0 0 0 chr1 8513499 8513532 -273680132 + AT_rich Low_complexity Low_complexity 1 33 0 546 144 0 52 chr1 8513532 8513629 -273680035 - U6 snRNA snRNA -2 105 14 2374 90 3 0 chr1 8514082 8514382 -273679282 - AluSp SINE Alu -12 301 1 2238 117 3 7 chr1 8514639 8514946 -273678718 + AluSx SINE Alu 1 306 -6 2183 104 10 0 chr1 8515507 8515795 -273677869 + AluSq SINE Alu 1 291 -22 274 319 59 89 chr1 8515928 8516097 -273677567 + L3 LINE CR1 402 565 -1012 2083 133 10 10 chr1 8516134 8516436 -273677228 + AluSx SINE Alu 1 302 -10 1087 220 81 23 chr1 8516436 8516695 -273676969 + MLT1A1 LTR MaLR 76 349 -16 366 205 141 0 chr1 8516822 8516900 -273676764 + MER58A DNA MER1_type 1 89 -18 1240 148 9 32 chr1 8516900 8517116 -273676548 - AluJb SINE Alu -15 297 87 639 246 0 0 chr1 8517116 8517250 -273676414 + MER58A DNA MER1_type 87 220 -4 2239 130 0 0 chr1 8517507 8517815 -273675849 - AluSg SINE Alu -2 308 1 1768 172 14 7 chr1 8517815 8518106 -273675558 - AluJo SINE Alu -19 293 1 346 233 25 50 chr1 8518110 8518230 -273675434 - L2 LINE L2 -685 2629 2513 1758 183 3 3 chr1 8518234 8518529 -273675135 + AluJo SINE Alu 1 295 -17 2454 68 14 0 chr1 8518532 8518825 -273674839 + AluSq SINE Alu 1 297 -16 2593 62 7 0 chr1 8518827 8519135 -273674529 + AluY SINE Alu 1 310 -1 1696 191 10 16 chr1 8519173 8519477 -273674187 + AluJb SINE Alu 5 306 -6 354 294 34 14 chr1 8519609 8519755 -273673909 + L3 LINE CR1 1230 1378 -199 215 61 30 0 chr1 8519891 8519924 -273673740 + (CA)n Simple_repeat Simple_repeat 2 35 0 212 143 24 0 chr1 8519924 8519966 -273673698 + (TA)n Simple_repeat Simple_repeat 2 44 0 246 49 0 0 chr1 8520396 8520437 -273673227 - Alu SINE Alu 0 300 260 180 0 0 0 chr1 8520437 8520457 -273673207 + (A)n Simple_repeat Simple_repeat 1 20 0 1513 88 5 0 chr1 8520467 8520671 -273672993 + MER51B LTR ERV1 48 252 -125 2388 92 0 7 chr1 8520676 8520981 -273672683 - AluY SINE Alu -8 303 1 1011 187 0 21 chr1 8520982 8521169 -273672495 + AluJb SINE Alu 115 297 -15 2501 60 7 3 chr1 8521179 8521477 -273672187 - AluSp SINE Alu -14 299 1 827 213 34 78 chr1 8521511 8521779 -273671885 - LTR8 LTR ERV1 -435 256 1 226 227 196 0 chr1 8521879 8521976 -273671688 + MER34 LTR ERV1 370 485 -57 581 251 70 32 chr1 8522134 8522321 -273671343 - L2 LINE L2 0 3313 3120 3549 102 33 38 chr1 8522324 8522850 -273670814 + LTR8 LTR ERV1 1 525 -166 2204 88 29 39 chr1 8522850 8522965 -273670699 + AluSg SINE Alu 1 116 -194 2534 43 33 0 chr1 8522965 8523266 -273670398 + AluY SINE Alu 1 311 0 2204 88 29 39 chr1 8523266 8523458 -273670206 + AluSg SINE Alu 116 305 -5 3549 102 33 38 chr1 8523458 8523512 -273670152 + LTR8 LTR ERV1 525 578 -113 311 143 0 0 chr1 8524714 8524770 -273668894 + LTR8 LTR ERV1 563 618 -73 206 170 0 21 chr1 8524774 8524821 -273668843 + T-rich Low_complexity Low_complexity 3 48 0 2085 143 7 0 chr1 8524824 8525124 -273668540 - AluSx SINE Alu -10 302 1 598 135 0 0 chr1 8525124 8525213 -273668451 + LTR8 LTR ERV1 603 691 0 21 36 0 0 chr1 8525393 8525421 -273668243 + AT_rich Low_complexity Low_complexity 1 28 0 976 87 0 8 chr1 8525443 8525570 -273668094 + AluSp/q SINE Alu 170 295 -18 2058 117 37 7 chr1 8525597 8525896 -273667768 + AluSc SINE Alu 1 308 -1 17779 75 5 7 chr1 8525980 8528411 -273665253 + HERV9 LTR ERV1 5972 8399 0 6166 66 45 21 chr1 8528411 8529218 -273664446 + LTR12 LTR ERV1 1 826 0 1486 129 160 4 chr1 8529221 8529477 -273664187 - AluJo SINE Alu -16 296 1 2145 136 3 0 chr1 8529508 8529816 -273663848 - AluSq SINE Alu -4 309 1 2081 119 0 20 chr1 8529819 8530122 -273663542 - AluSx SINE Alu -15 297 1 501 125 25 0 chr1 8530188 8530268 -273663396 - MER41B LTR ERV1 -221 414 333 1812 146 36 4 chr1 8530270 8530545 -273663119 + AluSx SINE Alu 1 284 -28 183 42 0 0 chr1 8530545 8530569 -273663095 + (CTAAA)n Simple_repeat Simple_repeat 2 25 0 1278 154 0 43 chr1 8530581 8530752 -273662912 - MER41B LTR ERV1 -282 353 193 2260 105 7 0 chr1 8530752 8531046 -273662618 - AluSg SINE Alu -14 296 1 1278 154 0 43 chr1 8531046 8531108 -273662556 - MER41B LTR ERV1 -442 193 130 2121 129 0 41 chr1 8531135 8531307 -273662357 - AluSx SINE Alu -8 304 126 576 0 0 0 chr1 8531307 8531371 -273662293 + (TTTTA)n Simple_repeat Simple_repeat 2 65 0 2053 145 3 0 chr1 8531371 8531654 -273662010 - AluSq SINE Alu -29 284 1 2121 129 0 41 chr1 8531654 8531797 -273661867 - AluSx SINE Alu -184 128 1 1348 148 145 17 chr1 8531817 8532107 -273661557 + LTR47A LTR ERVL 124 450 -2 2301 105 0 0 chr1 8532123 8532419 -273661245 - AluSx SINE Alu -16 296 1 876 184 180 39 chr1 8532555 8532811 -273660853 + MER21A LTR ERV1 1 292 -639 * 1224 107 32 0 chr1 8532791 8532978 -273660686 - MER30 DNA MER1_type -37 193 1 * 3133 159 87 29 chr1 8532978 8533344 -273660320 + MER21A LTR ERV1 245 588 -343 2242 93 0 0 chr1 8533344 8533624 -273660040 + AluSx SINE Alu 1 280 -32 224 77 26 0 chr1 8533626 8533665 -273659999 + (CAAA)n Simple_repeat Simple_repeat 2 41 0 3133 159 87 29 chr1 8533665 8533936 -273659728 + MER21A LTR ERV1 588 922 -9 294 95 0 0 chr1 8534488 8534530 -273659134 + (TCTCC)n Simple_repeat Simple_repeat 4 45 0 1632 161 0 16 chr1 8534530 8534779 -273658885 - AluJb SINE Alu -33 279 35 351 273 104 44 chr1 8534912 8535095 -273658569 + L1MEd LINE L1 619 812 -5307 222 62 0 0 chr1 8535095 8535127 -273658537 + (TTAA)n Simple_repeat Simple_repeat 2 33 0 1945 108 71 0 chr1 8535127 8535395 -273658269 - AluSx SINE Alu -25 287 1 183 129 0 0 chr1 8535440 8535471 -273658193 + (TC)n Simple_repeat Simple_repeat 2 32 0 2296 121 0 3 chr1 8535473 8535786 -273657878 - AluSx SINE Alu 0 312 1 314 339 99 0 chr1 8536149 8536341 -273657323 + L1MEd LINE L1 617 827 -5292 2363 122 0 0 chr1 8536375 8536687 -273656977 - AluSx SINE Alu 0 312 1 2673 40 0 3 chr1 8536691 8536995 -273656669 - AluYa5 SINE Alu -7 304 2 2810 22 0 10 chr1 8536998 8537312 -273656352 - AluYa5 SINE Alu 0 311 1 924 145 0 0 chr1 8537315 8537446 -273656218 - AluJo/FLAM SINE Alu -181 131 1 1254 86 0 32 chr1 8537912 8538098 -273655566 - HERVK9 LTR ERVK -4111 1805 1626 * 4176 89 63 17 chr1 8538094 8538732 -273654932 - HERVK9 LTR ERVK -5249 667 1 1353 148 76 8 chr1 8538732 8538982 -273654682 - MER9 LTR ERVK 0 511 245 519 202 0 0 chr1 8539005 8539089 -273654575 - AluJ/FLAM SINE Alu -224 88 5 306 325 57 57 chr1 8539110 8539334 -273654330 + LTR16A LTR ERVL 145 368 -82 835 143 8 0 chr1 8539334 8539460 -273654204 - L1PB2 LINE L1 -3 6148 6022 306 325 57 57 chr1 8539460 8539473 -273654191 + LTR16A LTR ERVL 368 380 -70 2375 71 0 0 chr1 8539473 8539782 -273653882 - AluSc SINE Alu 0 309 1 306 325 57 57 chr1 8539782 8539840 -273653824 + LTR16A LTR ERVL 379 442 -8 388 303 0 0 chr1 8540027 8540136 -273653528 - L2 LINE L2 -481 2833 2725 1078 117 0 25 chr1 8540151 8540314 -273653350 - AluSg/x SINE Alu -17 293 135 628 260 235 6 chr1 8540387 8540749 -273652915 - L2 LINE L2 -703 2611 2167 1500 157 8 16 chr1 8540899 8541147 -273652517 + AluJb SINE Alu 53 298 -14 232 167 0 42 chr1 8541396 8541444 -273652220 + T-rich Low_complexity Low_complexity 2 47 0 191 61 30 0 chr1 8542008 8542041 -273651623 + (CAA)n Simple_repeat Simple_repeat 1 34 0 5859 23 0 0 chr1 8542275 8542891 -273650773 + SVA Other Other 770 1385 -1 380 92 184 0 chr1 8542892 8542968 -273650696 + MER41A LTR ERV1 383 472 -82 186 43 0 0 chr1 8542969 8542992 -273650672 + (A)n Simple_repeat Simple_repeat 1 23 0 2034 122 0 69 chr1 8543111 8543446 -273650218 - AluSx SINE Alu 0 312 1 213 146 0 0 chr1 8543472 8543520 -273650144 + (TG)n Simple_repeat Simple_repeat 1 48 0 686 132 15 73 chr1 8543520 8543656 -273650008 - FRAM SINE Alu -9 167 40 2543 75 0 0 chr1 8544195 8544503 -273649161 - AluSx SINE Alu -4 308 1 1925 139 20 3 chr1 8544978 8545273 -273648391 + AluSx SINE Alu 1 300 -12 2770 167 12 37 chr1 8545958 8546528 -273647136 + L1MB5 LINE L1 5584 6139 -35 2308 89 10 7 chr1 8546535 8546828 -273646836 + AluSq SINE Alu 6 299 -14 2106 115 10 3 chr1 8546841 8547145 -273646519 + AluJb SINE Alu 7 312 0 2281 104 3 0 chr1 8547150 8547449 -273646215 + AluSg SINE Alu 3 302 -8 883 137 0 0 chr1 8547449 8547573 -273646091 + FLAM_C SINE Alu 12 135 -8 1104 89 0 0 chr1 8547894 8548029 -273645635 + AluSq/x SINE Alu 1 135 -177 2323 112 0 13 chr1 8548029 8548343 -273645321 + AluSx SINE Alu 1 310 -2 1013 208 19 102 chr1 8548646 8548968 -273644696 + AluJo SINE Alu 1 295 -7 2328 95 16 0 chr1 8549058 8549362 -273644302 + AluSq SINE Alu 1 309 -4 2193 105 0 0 chr1 8549693 8549970 -273643694 - AluSx SINE Alu -34 278 2 2183 137 0 0 chr1 8549974 8550274 -273643390 - AluSx SINE Alu -8 304 5 812 168 0 0 chr1 8550431 8550556 -273643108 - FLAM_A SINE Alu -8 125 1 2116 138 0 3 chr1 8550610 8550906 -273642758 + AluSx SINE Alu 1 295 -17 585 118 12 0 chr1 8550909 8550994 -273642670 + AluSx SINE Alu 2 87 -225 467 272 54 16 chr1 8551152 8551336 -273642328 + LTR21A LTR ERV1 300 490 -15 2531 179 43 14 chr1 8551337 8551894 -273641770 + HERVFH21 LTR ERV1 6 578 -5951 * 17789 188 20 23 chr1 8551885 8554169 -273639495 + HERVFH21 LTR ERV1 536 2831 -3698 1931 134 4 0 chr1 8554169 8554438 -273639226 - AluSg SINE Alu -40 270 1 17789 188 20 23 chr1 8554438 8556079 -273637585 + HERVFH21 LTR ERV1 2831 4476 -2053 2443 266 28 21 chr1 8556597 8557421 -273636243 + HERVFH21 LTR ERV1 5700 6529 0 484 261 56 17 chr1 8557589 8557769 -273635895 + LTR21A LTR ERV1 300 486 -19 1376 142 110 0 chr1 8557769 8557988 -273635676 + AluSx SINE Alu 70 312 0 2715 42 0 6 chr1 8558039 8558351 -273635313 - AluY SINE Alu -1 310 1 938 144 0 0 chr1 8558445 8558577 -273635087 + FLAM_A SINE Alu 1 132 -1 185 309 0 0 chr1 8558620 8558675 -273634989 + L2 LINE L2 2486 2540 -774 622 282 81 69 chr1 8558722 8558795 -273634869 - MLT1L LTR MaLR 0 615 544 2390 105 0 0 chr1 8558795 8559101 -273634563 + AluSg1 SINE Alu 1 306 -3 622 282 81 69 chr1 8559101 8559346 -273634318 - MLT1L LTR MaLR -71 544 288 1979 140 0 45 chr1 8559346 8559515 -273634149 - AluJo SINE Alu -10 302 152 2002 131 46 0 chr1 8559515 8559798 -273633866 - AluSx SINE Alu -15 297 2 1979 140 0 45 chr1 8559798 8559942 -273633722 - AluJo SINE Alu -160 152 3 622 282 81 69 chr1 8559942 8560030 -273633634 - MLT1L LTR MaLR -327 288 203 247 295 0 0 chr1 8559997 8560058 -273633606 - MLT1J LTR MaLR -340 171 111 * 200 111 0 28 chr1 8560194 8560230 -273633434 + (TTCA)n Simple_repeat Simple_repeat 1 35 0 336 302 31 0 chr1 8560230 8560359 -273633305 - L1M4 LINE L1 -2400 3746 3614 599 234 8 0 chr1 8560363 8560487 -273633177 - MER58B DNA MER1_type -6 335 211 523 340 87 4 chr1 8560533 8560774 -273632890 - L1M4 LINE L1 -2539 3607 3347 606 125 40 125 chr1 8560779 8560830 -273632834 - L1MB2 LINE L1 0 6171 6117 2290 104 0 0 chr1 8560830 8561129 -273632535 - AluSq SINE Alu -14 299 1 606 125 40 125 chr1 8561129 8561229 -273632435 - L1MB2 LINE L1 -54 6117 6033 2165 133 0 3 chr1 8561241 8561541 -273632123 - AluSx SINE Alu -13 299 1 1664 177 0 16 chr1 8561541 8561858 -273631806 - L1MB4 LINE L1 -43 6137 5826 2269 109 0 28 chr1 8561928 8562249 -273631415 - AluSx SINE Alu 0 312 1 389 20 20 0 chr1 8562250 8562300 -273631364 + (TTTTA)n Simple_repeat Simple_repeat 2 52 0 1898 130 0 60 chr1 8562300 8562600 -273631064 - AluSx SINE Alu -30 282 1 585 143 0 31 chr1 8562605 8562703 -273630961 - AluJo SINE Alu -176 136 42 252 147 0 0 chr1 8562773 8562816 -273630848 + Alu SINE Alu 1 36 -272 2103 226 69 39 chr1 8562919 8563171 -273630493 - L1ME3A LINE L1 -202 5968 5725 1919 156 21 0 chr1 8563171 8563459 -273630205 - AluJb SINE Alu -18 294 1 2103 226 69 39 chr1 8563459 8563673 -273629991 - L1ME3A LINE L1 -445 5725 5519 2494 104 11 16 chr1 8563673 8564039 -273629625 - THE1B LTR MaLR 0 364 1 2103 226 69 39 chr1 8564039 8564362 -273629302 - L1ME3A LINE L1 -651 5519 5157 662 160 48 40 chr1 8564363 8564488 -273629176 - FLAM_C SINE Alu -3 130 5 2491 86 0 0 chr1 8564535 8564838 -273628826 - AluY SINE Alu -8 303 1 2153 144 0 0 chr1 8564873 8565172 -273628492 - AluSx SINE Alu -13 299 1 2170 96 34 7 chr1 8565184 8565477 -273628187 - AluY SINE Alu -10 301 1 231 36 0 0 chr1 8565488 8565516 -273628148 + (A)n Simple_repeat Simple_repeat 1 28 0 1716 181 3 14 chr1 8565599 8565887 -273627777 + AluJb SINE Alu 1 285 -27 305 181 29 0 chr1 8565959 8566035 -273627629 - L1MC3 LINE L1 0 7785 7716 226 164 66 0 chr1 8566068 8566129 -273627535 - L1ME3A LINE L1 -1779 4367 4303 1826 175 21 0 chr1 8566198 8566484 -273627180 + AluJb SINE Alu 2 293 -19 2181 102 0 3 chr1 8566490 8566815 -273626849 + AluSg SINE Alu 1 324 0 258 105 0 0 chr1 8566989 8567027 -273626637 + (A)n Simple_repeat Simple_repeat 1 38 0 1399 128 5 0 chr1 8567381 8567577 -273626087 - AluSx SINE Alu -115 197 1 2013 118 29 0 chr1 8567925 8568245 -273625419 - AluSx SINE Alu 0 312 1 394 227 31 0 chr1 8568247 8568344 -273625320 + HERVL40 LTR ERVL 3519 3618 -1912 1940 129 0 48 chr1 8568370 8568532 -273625132 - AluJb SINE Alu -18 294 126 243 0 0 0 chr1 8568532 8568559 -273625105 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 2130 121 4 0 chr1 8568559 8568840 -273624824 - AluSg SINE Alu -28 282 1 1940 129 0 48 chr1 8568840 8568985 -273624679 - AluJb SINE Alu -184 128 1 909 141 83 26 chr1 8569279 8569471 -273624193 + MLT1D LTR MaLR 1 203 -302 738 179 46 35 chr1 8569895 8569939 -273623725 + MER61D LTR ERV1 314 356 -145 4083 98 19 20 chr1 8569939 8570534 -273623130 - LTR61 LTR ERV1 0 595 2 738 179 46 35 chr1 8570534 8570672 -273622992 + MER61D LTR ERV1 356 483 -18 1305 152 26 4 chr1 8570713 8570944 -273622720 + MLT1D LTR MaLR 270 505 0 2587 83 0 0 chr1 8572066 8572379 -273621285 + AluSq SINE Alu 1 313 0 1399 128 5 0 chr1 8572744 8572940 -273620724 - AluSx SINE Alu -115 197 1 2361 110 0 0 chr1 8573303 8573613 -273620051 - AluSx SINE Alu -2 310 1 857 118 28 107 chr1 8574035 8574213 -273619451 + AluJb SINE Alu 149 312 0 223 244 282 0 chr1 8575290 8575368 -273618296 + MIR3 SINE MIR 62 161 -47 186 304 144 24 chr1 8575375 8575478 -273618186 - MIR SINE MIR -23 239 117 1930 153 36 0 chr1 8575478 8575779 -273617885 + AluJb SINE Alu 1 312 0 186 304 144 24 chr1 8575779 8575800 -273617864 - MIR SINE MIR -145 117 100 347 189 175 34 chr1 8575825 8575951 -273617713 - MIR SINE MIR -78 130 1 2234 113 20 0 chr1 8577220 8577521 -273616143 - AluSx SINE Alu -5 307 1 2374 110 0 0 chr1 8577983 8578293 -273615371 - AluSx SINE Alu -2 310 1 2176 101 14 10 chr1 8579040 8579337 -273614327 - AluSp SINE Alu -15 298 1 2435 87 0 0 chr1 8579877 8580175 -273613489 + AluSx SINE Alu 1 298 -14 2348 93 0 13 chr1 8581171 8581473 -273612191 - AluSx SINE Alu -14 298 1 294 376 99 3 chr1 8581537 8581714 -273611950 - MIR3 SINE MIR -65 143 2 1920 145 14 3 chr1 8581776 8582073 -273611591 + AluJb SINE Alu 1 300 -12 2470 102 0 0 chr1 8582123 8582436 -273611228 + AluSq SINE Alu 1 313 0 23 0 0 0 chr1 8582990 8583013 -273610651 + AT_rich Low_complexity Low_complexity 1 23 0 2035 150 0 0 chr1 8583016 8583309 -273610355 - AluSx SINE Alu -19 293 1 2195 124 0 0 chr1 8583335 8583626 -273610038 - AluSx SINE Alu -21 291 1 2277 102 0 0 chr1 8583853 8584146 -273609518 - AluSx SINE Alu -19 293 1 2201 136 94 26 chr1 8584147 8584531 -273609133 - L1MC1 LINE L1 -236 6097 5741 1652 169 25 18 chr1 8584531 8584809 -273608855 + AluJb SINE Alu 1 280 -32 348 24 0 0 chr1 8584809 8584850 -273608814 + (CAAT)n Simple_repeat Simple_repeat 4 44 0 2201 136 94 26 chr1 8584850 8584920 -273608744 - L1MC1 LINE L1 -591 5742 5611 4009 104 3 28 chr1 8584920 8585363 -273608301 + MER41A LTR ERV1 1 428 -126 2034 131 24 0 chr1 8585363 8585654 -273608010 - AluSx SINE Alu -14 298 1 4009 104 3 28 chr1 8585654 8585778 -273607886 + MER41A LTR ERV1 428 554 0 475 253 20 0 chr1 8585778 8585924 -273607740 - L1M4 LINE L1 -1567 4579 4431 997 127 0 0 chr1 8585930 8586064 -273607600 - AluSq/x SINE Alu -178 134 1 23 0 0 0 chr1 8586069 8586092 -273607572 + AT_rich Low_complexity Low_complexity 1 23 0 299 239 125 11 chr1 8586150 8586238 -273607426 - MER5C DNA MER1_type -203 121 24 1932 150 7 3 chr1 8586286 8586573 -273607091 + AluJb SINE Alu 3 290 -22 2348 99 0 0 chr1 8587131 8587424 -273606240 + AluSx SINE Alu 2 294 -18 1850 138 29 42 chr1 8587567 8587878 -273605786 + AluSx SINE Alu 1 307 -5 2354 108 0 0 chr1 8588525 8588830 -273604834 - AluSx SINE Alu -7 305 1 1568 186 0 32 chr1 8588856 8589136 -273604528 + AluJo SINE Alu 1 271 -41 2318 106 3 0 chr1 8589354 8589655 -273604009 - AluSq SINE Alu -9 304 3 2376 109 3 0 chr1 8590500 8590803 -273602861 - AluSq SINE Alu -9 304 1 2324 113 3 0 chr1 8590839 8591140 -273602524 + AluSq SINE Alu 1 302 -11 2271 112 3 0 chr1 8591140 8591435 -273602229 + AluSx SINE Alu 1 297 -15 1419 243 82 54 chr1 8591439 8591933 -273601731 + L1M4c LINE L1 816 1295 -5268 423 0 0 0 chr1 8591933 8591980 -273601684 + (CA)n Simple_repeat Simple_repeat 2 48 0 1419 243 82 54 chr1 8591980 8592852 -273600812 + L1M4c LINE L1 1295 2385 -4178 2294 89 13 22 chr1 8593147 8593462 -273600202 + AluSx SINE Alu 1 312 0 1054 298 74 70 chr1 8594300 8594738 -273598926 + L2 LINE L2 779 1214 -2100 1817 164 10 7 chr1 8594738 8595030 -273598634 - AluJb SINE Alu -19 293 1 1054 298 74 70 chr1 8595030 8595426 -273598238 + L2 LINE L2 1214 1620 -1694 2213 129 3 3 chr1 8595426 8595735 -273597929 - AluSc SINE Alu 0 309 1 1054 298 74 70 chr1 8595735 8595882 -273597782 + L2 LINE L2 1620 1765 -1549 2185 128 0 0 chr1 8596151 8596455 -273597209 + AluSx SINE Alu 1 304 -8 2923 155 27 37 chr1 8596456 8596795 -273596869 - L1MB3 LINE L1 -37 6146 5805 2248 112 3 0 chr1 8596795 8597090 -273596574 + AluSx SINE Alu 1 296 -16 2923 155 27 37 chr1 8597090 8597294 -273596370 - L1MB3 LINE L1 -378 5805 5607 2359 82 26 7 chr1 8597294 8597599 -273596065 - AluSx SINE Alu -1 311 1 2923 155 27 37 chr1 8597599 8597653 -273596011 - L1MB3 LINE L1 -576 5607 5554 30 0 0 0 chr1 8598154 8598184 -273595480 + AT_rich Low_complexity Low_complexity 1 30 0 888 129 0 0 chr1 8598188 8598312 -273595352 - FLAM_C SINE Alu -19 124 1 297 324 176 5 chr1 8598485 8598689 -273594975 - MIR SINE MIR -11 251 13 2193 129 7 0 chr1 8599153 8599455 -273594209 - AluSx SINE Alu -8 304 1 1113 256 66 69 chr1 8599543 8599923 -273593741 + L1MEd LINE L1 572 952 -5177 2175 118 3 7 chr1 8599923 8600220 -273593444 + AluSq SINE Alu 1 296 -17 2301 104 0 3 chr1 8600224 8600523 -273593141 + AluSg SINE Alu 2 299 -11 1113 256 66 69 chr1 8600523 8600805 -273592859 + L1MEd LINE L1 955 1236 -4893 192 40 0 0 chr1 8600805 8600830 -273592834 + (TC)n Simple_repeat Simple_repeat 2 26 0 1113 256 66 69 chr1 8600830 8601117 -273592547 + L1MEd LINE L1 1236 1482 -4647 2036 123 23 10 chr1 8601117 8601425 -273592239 + AluSx SINE Alu 1 312 0 1113 256 66 69 chr1 8601425 8601455 -273592209 + L1MEd LINE L1 1482 1511 -4618 2118 124 27 0 chr1 8601691 8601990 -273591674 - AluSx SINE Alu -5 307 1 2255 114 3 0 chr1 8602501 8602800 -273590864 - AluSx SINE Alu -12 300 1 1934 163 0 10 chr1 8603239 8603540 -273590124 - AluJo SINE Alu -14 298 1 2286 81 0 40 chr1 8603582 8603904 -273589760 + AluY SINE Alu 3 311 0 2208 83 17 10 chr1 8604219 8604507 -273589157 - AluSx SINE Alu -22 290 1 922 101 20 0 chr1 8604886 8605034 -273588630 + (TTTC)n Simple_repeat Simple_repeat 2 152 0 1921 137 11 4 chr1 8605034 8605312 -273588352 - AluJb SINE Alu -32 280 1 2422 84 0 7 chr1 8606451 8606759 -273586905 - AluSc SINE Alu -3 306 1 2094 138 17 0 chr1 8606759 8607050 -273586614 - AluSx SINE Alu -16 296 1 943 178 11 11 chr1 8607394 8607568 -273586096 - FRAM SINE Alu -3 173 1 365 274 162 0 chr1 8607791 8607908 -273585756 - MIR SINE MIR -112 150 15 317 353 59 0 chr1 8607922 8608041 -273585623 - L2 LINE L2 -1 3271 3146 235 308 185 10 chr1 8608229 8608424 -273585240 - L2 LINE L2 -384 2930 2702 2275 72 11 7 chr1 8608607 8608959 -273584705 + AluSc SINE Alu 1 353 0 321 256 11 0 chr1 8608986 8609076 -273584588 + L1MC5 LINE L1 5711 5801 -2007 2154 102 17 7 chr1 8609102 8609395 -273584269 - AluSg SINE Alu -14 296 1 2697 48 0 0 chr1 8609541 8609852 -273583812 + AluY SINE Alu 1 311 0 1973 158 7 0 chr1 8610383 8610680 -273582984 + AluJb SINE Alu 1 299 -13 907 226 18 148 chr1 8610685 8610743 -273582921 + L1MC5 LINE L1 6530 6594 -1214 2255 148 0 0 chr1 8610743 8611061 -273582603 - 7SLRNA srpRNA srpRNA -2 318 1 907 226 18 148 chr1 8611061 8611179 -273582485 + L1MC5 LINE L1 6594 6726 -1082 2280 105 0 3 chr1 8611179 8611474 -273582190 - AluSx SINE Alu -18 294 1 907 226 18 148 chr1 8611474 8611571 -273582093 + L1MC5 LINE L1 6726 6834 -974 839 148 0 15 chr1 8611571 8611706 -273581958 + FLAM_C SINE Alu 1 133 0 907 226 18 148 chr1 8611706 8612053 -273581611 + L1MC5 LINE L1 6834 7001 -807 1062 231 162 35 chr1 8612072 8612449 -273581215 - MLT1D LTR MaLR 0 505 81 224 194 0 0 chr1 8612449 8612485 -273581179 + polypyrimidine Low_complexity Low_complexity 3 38 0 462 152 26 53 chr1 8612486 8612637 -273581027 + CT-rich Low_complexity Low_complexity 2 148 0 1556 171 16 49 chr1 8612662 8612967 -273580697 - AluJb SINE Alu -17 295 1 267 141 169 42 chr1 8612967 8613038 -273580626 - MLT1D LTR MaLR -418 87 8 266 200 11 89 chr1 8613073 8613163 -273580501 + L1MC5 LINE L1 7151 7233 -728 228 67 0 0 chr1 8613201 8613231 -273580433 + (CTATT)n Simple_repeat Simple_repeat 3 32 0 320 308 31 31 chr1 8613342 8613472 -273580192 + L2 LINE L2 3184 3313 0 917 285 88 9 chr1 8613480 8613984 -273579680 + L1ME2 LINE L1 5268 5829 -335 2520 71 0 10 chr1 8614013 8614324 -273579340 + AluSc SINE Alu 1 308 -1 1877 164 3 19 chr1 8614352 8614669 -273578995 + AluJb SINE Alu 1 312 0 1506 209 31 48 chr1 8614761 8615115 -273578549 + MER7A DNA MER2_type 1 346 0 1876 124 44 0 chr1 8615181 8615455 -273578209 + AluJb SINE Alu 12 297 -15 564 144 33 39 chr1 8615477 8615658 -273578006 + GA-rich Low_complexity Low_complexity 1 180 0 218 314 14 0 chr1 8615798 8615868 -273577796 + L2 LINE L2 2694 2764 -550 2346 95 7 0 chr1 8615933 8616228 -273577436 - AluSx SINE Alu -15 297 1 273 303 162 22 chr1 8616228 8616413 -273577251 + L2 LINE L2 2754 2964 -350 848 165 0 23 chr1 8616935 8617068 -273576596 + AluJo SINE Alu 5 134 -178 255 281 247 0 chr1 8617115 8617261 -273576403 - MIR SINE MIR -75 187 6 2016 138 3 0 chr1 8617643 8617939 -273575725 + AluJo SINE Alu 1 297 -15 2078 141 0 0 chr1 8618191 8618488 -273575176 - AluJo SINE Alu -13 299 3 2156 131 0 0 chr1 8618520 8618832 -273574832 + AluSx SINE Alu 1 312 0 285 227 0 15 chr1 8619448 8619514 -273574150 - MIR3 SINE MIR -31 177 113 1889 125 38 0 chr1 8620584 8620871 -273572793 + AluSx SINE Alu 1 298 -14 1864 127 30 17 chr1 8621505 8621805 -273571859 - AluJb SINE Alu -8 304 1 407 335 42 47 chr1 8621817 8622053 -273571611 + L1MEc LINE L1 2099 2333 -4063 1695 139 63 33 chr1 8622070 8622373 -273571291 + AluJo SINE Alu 1 312 0 1932 109 4 0 chr1 8622406 8622671 -273570993 - AluSx SINE Alu -46 266 1 550 317 27 57 chr1 8623001 8623370 -273570294 + L2 LINE L2 2331 2688 -626 1658 153 42 14 chr1 8623387 8623674 -273569990 - AluJo SINE Alu -17 295 1 391 49 49 0 chr1 8623677 8623738 -273569926 + (TTTC)n Simple_repeat Simple_repeat 3 66 0 545 319 59 11 chr1 8623787 8624060 -273569604 - MLT1K LTR MaLR 0 588 303 2037 112 53 30 chr1 8624199 8624538 -273569126 - THE1B LTR MaLR -17 347 1 262 329 0 0 chr1 8624538 8624611 -273569053 + L1MEd LINE L1 446 518 -5601 358 323 51 15 chr1 8624614 8624809 -273568855 + L1MC5 LINE L1 7498 7699 -262 2000 118 0 7 chr1 8624816 8625113 -273568551 - AluSc SINE Alu -14 295 1 251 293 65 83 chr1 8625712 8625942 -273567722 - MIR SINE MIR -4 258 35 2169 125 0 0 chr1 8625945 8626257 -273567407 - AluSx SINE Alu 0 312 1 2280 78 3 0 chr1 8626353 8626649 -273567015 + AluY SINE Alu 1 297 -14 2146 97 7 0 chr1 8626650 8626939 -273566725 + AluSq SINE Alu 1 291 -22 1595 204 0 6 chr1 8626939 8627253 -273566411 - AluJo SINE Alu 0 312 1 2648 220 73 31 chr1 8627275 8627973 -273565691 - L1ME1 LINE L1 -36 6130 5394 2111 86 24 10 chr1 8627973 8628263 -273565401 - AluSq SINE Alu -19 294 1 2648 220 73 31 chr1 8628263 8628342 -273565322 - L1ME1 LINE L1 -772 5394 5320 869 189 0 0 chr1 8628343 8628524 -273565140 + FRAM SINE Alu 1 179 0 2052 206 57 66 chr1 8628530 8628583 -273565081 - L1ME1 LINE L1 -813 5333 5281 2247 87 10 0 chr1 8628583 8628883 -273564781 - AluSq SINE Alu -10 303 1 2052 206 57 66 chr1 8628883 8629307 -273564357 - L1ME1 LINE L1 -865 5281 4890 2194 111 0 3 chr1 8629307 8629614 -273564050 + AluSx SINE Alu 1 306 -6 2052 206 57 66 chr1 8629614 8629945 -273563719 - L1ME1 LINE L1 -1256 4890 4557 1479 220 12 30 chr1 8629943 8630347 -273563317 - L1ME1 LINE L1 -2313 3833 3437 * 938 78 117 0 chr1 8630356 8630484 -273563180 - AluSq/x SINE Alu -170 143 1 435 293 0 0 chr1 8630484 8630607 -273563057 - L1ME1 LINE L1 -2690 3456 3334 884 167 13 7 chr1 8631363 8631513 -273562151 + FRAM SINE Alu 1 151 -15 2283 112 0 0 chr1 8631524 8631836 -273561828 + AluSx SINE Alu 1 312 0 351 0 0 0 chr1 8631933 8631972 -273561692 + (TG)n Simple_repeat Simple_repeat 1 39 0 669 232 107 28 chr1 8632058 8632275 -273561389 + MLT1G LTR MaLR 360 503 -2 1973 135 14 0 chr1 8632607 8632904 -273560760 - AluJb SINE Alu -10 302 2 4944 164 15 38 chr1 8633007 8633984 -273559680 + LTR5 LTR ERVK 1 955 -14 2226 108 7 0 chr1 8634763 8635068 -273558596 + AluSx SINE Alu 1 307 -5 1412 163 118 11 chr1 8635267 8635537 -273558127 + AluJo SINE Alu 1 299 -13 433 158 95 120 chr1 8636533 8636691 -273556973 - MER106B DNA MER1_type -10 1049 896 1459 125 103 0 chr1 8636767 8636999 -273556665 + AluSx SINE Alu 57 312 0 1773 132 28 14 chr1 8637452 8637739 -273555925 - AluSx SINE Alu -21 291 1 250 234 0 0 chr1 8638400 8638447 -273555217 - L2 LINE L2 -1 3312 3266 180 282 0 99 chr1 8638831 8638902 -273554762 - MIR SINE MIR -34 228 165 1145 95 24 0 chr1 8638922 8639090 -273554574 - AluSg/x SINE Alu -8 302 131 245 269 30 0 chr1 8639449 8639516 -273554148 - L2 LINE L2 -551 2763 2695 2108 106 10 0 chr1 8639791 8640083 -273553581 - AluSx SINE Alu -17 295 1 1960 145 7 3 chr1 8640641 8640945 -273552719 - AluJb SINE Alu -7 305 1 438 318 63 16 chr1 8641012 8641201 -273552463 + MER20B DNA MER1_type 542 739 -44 2281 101 0 0 chr1 8641533 8641840 -273551824 - AluSq SINE Alu 0 313 7 2354 198 43 19 chr1 8642013 8642553 -273551111 + MER74A LTR ERVL 6 558 0 849 144 0 34 chr1 8642560 8642706 -273550958 + FLAM_C SINE Alu 1 141 -2 2245 104 7 0 chr1 8642929 8643238 -273550426 - AluSx SINE Alu -1 311 1 1957 147 0 10 chr1 8644067 8644380 -273549284 - AluSq SINE Alu -3 310 1 996 90 0 8 chr1 8644384 8644518 -273549146 - AluSq/x SINE Alu -180 133 1 340 312 102 5 chr1 8644947 8645133 -273548531 + MIR3 SINE MIR 2 205 -3 1667 172 26 23 chr1 8646909 8647211 -273546453 - AluJo SINE Alu -9 303 1 1737 140 0 14 chr1 8647511 8647790 -273545874 + AluJb SINE Alu 1 275 -37 582 183 0 0 chr1 8647790 8647905 -273545759 + GA-rich Low_complexity Low_complexity 4 118 0 2861 146 74 40 chr1 8648047 8648279 -273545385 + MER39B LTR ERV1 1 223 -430 1723 100 4 0 chr1 8648279 8648544 -273545120 + AluSx SINE Alu 53 318 0 2861 146 74 40 chr1 8648544 8648915 -273544749 + MER39B LTR ERV1 223 626 -27 407 221 58 0 chr1 8648917 8649021 -273544643 + L2 LINE L2 1328 1437 -1877 395 266 202 45 chr1 8649056 8649368 -273544296 + L2 LINE L2 1621 1981 -1333 911 143 0 0 chr1 8650088 8650214 -273543450 + FLAM_C SINE Alu 1 126 -7 1263 184 148 42 chr1 8650654 8650830 -273542834 + MLT1A2 LTR MaLR 2 158 -216 2159 122 0 0 chr1 8650830 8651141 -273542523 + AluSx SINE Alu 1 311 -1 1263 184 148 42 chr1 8651141 8651301 -273542363 + MLT1A2 LTR MaLR 158 374 0 547 221 10 171 chr1 8651304 8651602 -273542062 + L3 LINE CR1 1313 1562 -15 631 122 0 0 chr1 8651857 8651947 -273541717 - Alu SINE Alu -9 301 212 2146 105 114 21 chr1 8651947 8652280 -273541384 + THE1B LTR MaLR 1 364 0 1564 119 0 0 chr1 8652280 8652498 -273541166 - AluSx SINE Alu -94 218 1 267 315 62 53 chr1 8653783 8654016 -273539648 - MIR SINE MIR -6 256 29 2378 68 0 0 chr1 8654514 8654807 -273538857 + AluY SINE Alu 1 293 -18 794 135 23 23 chr1 8654816 8654949 -273538715 + FLAM_C SINE Alu 1 133 0 2058 114 6 29 chr1 8655018 8655334 -273538330 - AluSx SINE Alu -3 309 1 308 276 69 9 chr1 8655346 8655462 -273538202 + MIR SINE MIR 74 196 -66 300 306 171 5 chr1 8655620 8655836 -273537828 + L2 LINE L2 1918 2169 -1145 301 294 147 54 chr1 8655899 8656103 -273537561 + L1 LINE L1 2970 3192 -2954 820 135 0 15 chr1 8656236 8656369 -273537295 + FLAM_C SINE Alu 13 143 0 2289 97 0 25 chr1 8656443 8656763 -273536901 - AluSx SINE Alu 0 312 1 308 276 69 9 chr1 8656775 8656891 -273536773 + MIR SINE MIR 74 196 -66 383 282 171 5 chr1 8657050 8657266 -273536398 + L2 LINE L2 1918 2169 -1145 746 235 41 101 chr1 8657859 8658246 -273535418 - L2 LINE L2 0 3313 2950 1955 132 0 7 chr1 8659328 8659486 -273534178 - AluSx SINE Alu -18 294 137 2401 71 0 13 chr1 8659486 8659797 -273533867 - AluY SINE Alu -4 307 1 1955 132 0 7 chr1 8659797 8659934 -273533730 - AluSx SINE Alu -175 137 1 1420 119 21 4 chr1 8659939 8660174 -273533490 - L1PA14 LINE L1 0 6161 5923 1858 149 0 10 chr1 8660507 8660815 -273532849 + AluJb SINE Alu 1 305 -7 1179 184 0 26 chr1 8660940 8661174 -273532490 - AluJb SINE Alu 0 312 85 1489 152 17 0 chr1 8661249 8661479 -273532185 - AluSx SINE Alu -78 234 1 760 203 0 0 chr1 8661480 8661608 -273532056 - AluSq/x SINE Alu -184 129 2 1052 232 0 20 chr1 8661612 8661858 -273531806 - MLT1D-int LTR MaLR -1130 241 1 734 169 0 0 chr1 8661860 8661996 -273531668 - MLT1D LTR MaLR 0 505 370 * 949 159 19 0 chr1 8661991 8662148 -273531516 + MSTD LTR MaLR 237 396 0 1796 186 0 0 chr1 8662369 8662681 -273530983 + AluJb SINE Alu 1 312 0 30 0 0 0 chr1 8663124 8663154 -273530510 + AT_rich Low_complexity Low_complexity 1 30 0 554 155 216 0 chr1 8663159 8663256 -273530408 - FLAM_C SINE Alu -24 119 2 389 241 0 0 chr1 8663480 8663563 -273530101 - L2 LINE L2 0 3272 3190 3868 197 65 117 chr1 8663656 8664979 -273528685 - MER52A LTR ERV1 0 1278 25 268 53 26 0 chr1 8664979 8665017 -273528647 + MER52A LTR ERV1 1 39 -1716 323 256 5 85 chr1 8665099 8665192 -273528472 - Charlie7 DNA MER1_type 0 2612 2542 2208 80 7 0 chr1 8665192 8665481 -273528183 - AluY SINE Alu -20 291 1 323 256 5 85 chr1 8665481 8665586 -273528078 - Charlie7 DNA MER1_type -70 2542 2430 1279 157 59 77 chr1 8665820 8666133 -273527531 - AluJo SINE Alu 0 308 1 450 359 69 7 chr1 8666226 8666530 -273527134 + L2 LINE L2 2632 2954 -360 239 231 19 0 chr1 8666629 8666681 -273526983 + L2 LINE L2 3247 3299 -14 250 288 113 38 chr1 8666686 8666846 -273526818 + L2 LINE L2 2233 2404 -910 1034 165 54 66 chr1 8667345 8667587 -273526077 - L1MC3 LINE L1 -1152 6633 6395 577 295 43 5 chr1 8667668 8667875 -273525789 - MIR SINE MIR -28 234 20 2180 149 30 25 chr1 8668311 8668673 -273524991 - THE1B LTR MaLR 0 364 1 1085 224 19 0 chr1 8668785 8668990 -273524674 - AluJb SINE Alu -19 293 85 424 213 4 107 chr1 8668990 8669102 -273524562 - AluSg/x SINE Alu -62 248 171 322 243 0 0 chr1 8669067 8669141 -273524523 - L2 LINE L2 -46 3267 3194 * 2557 77 0 3 chr1 8669163 8669474 -273524190 + AluY SINE Alu 1 310 -1 454 267 82 0 chr1 8673538 8673684 -273519980 + MIR SINE MIR 84 241 -21 182 339 25 16 chr1 8673950 8674071 -273519593 + MIR SINE MIR 109 230 -32 654 186 16 31 chr1 8674879 8675008 -273518656 + AluSq/x SINE Alu 1 127 -185 248 233 26 9 chr1 8675008 8675124 -273518540 + (TG)n Simple_repeat Simple_repeat 1 118 0 300 299 35 11 chr1 8675144 8675231 -273518433 + L1MC4 LINE L1 6615 6703 -1339 414 173 18 9 chr1 8675231 8675341 -273518323 + (TG)n Simple_repeat Simple_repeat 1 111 0 241 146 0 0 chr1 8675571 8675612 -273518052 + LTR54 LTR ERV1 402 442 -68 181 252 57 65 chr1 8676054 8676177 -273517487 - L2 LINE L2 -2858 456 335 2558 60 0 3 chr1 8676328 8676626 -273517038 - AluSq SINE Alu -16 297 1 424 132 0 15 chr1 8676652 8676720 -273516944 + AluS SINE Alu 2 68 -250 405 255 100 89 chr1 8676822 8677093 -273516571 + L1MC5 LINE L1 7492 7765 -196 221 94 75 0 chr1 8677095 8677148 -273516516 + (TA)n Simple_repeat Simple_repeat 2 58 0 1949 166 0 3 chr1 8677149 8677445 -273516219 - AluJb SINE Alu -17 295 1 6689 45 40 11 chr1 8677575 8678447 -273515217 + MER11D LTR ERVK 1 897 0 1056 149 18 0 chr1 8678525 8678693 -273514971 - AluJb SINE Alu -5 307 137 451 322 47 0 chr1 8679038 8679187 -273514477 - L1ME LINE L1 -359 5762 5607 2192 107 24 3 chr1 8679283 8679574 -273514090 - AluSx SINE Alu -15 297 1 1704 138 99 18 chr1 8680211 8680494 -273513170 - AluJo SINE Alu -6 306 1 297 115 0 167 chr1 8682452 8682626 -273511038 + (CCCCG)n Simple_repeat Simple_repeat 2 146 0 1683 152 38 3 chr1 8682840 8683130 -273510534 + AluSg SINE Alu 2 301 -9 2930 98 33 15 chr1 8683253 8683710 -273509954 - MER4C LTR ERV1 0 465 1 1871 151 11 0 chr1 8683793 8684077 -273509587 + AluJo SINE Alu 22 308 -4 770 83 9 0 chr1 8684094 8684203 -273509461 + MER83 LTR ERV1 1 110 -338 1651 164 78 55 chr1 8684206 8684589 -273509075 + MER83 LTR ERV1 56 447 -1 2418 95 0 0 chr1 8684696 8684990 -273508674 - AluSq SINE Alu -18 295 2 2384 98 0 0 chr1 8684991 8685286 -273508378 - AluSx SINE Alu -17 295 1 877 145 7 0 chr1 8685674 8685812 -273507852 - LTR23 LTR ERV1 0 437 299 2037 71 12 0 chr1 8685817 8686069 -273507595 - AluSq SINE Alu -10 303 49 1850 171 3 0 chr1 8686170 8686462 -273507202 + AluJb SINE Alu 18 310 -2 1958 94 36 50 chr1 8686496 8686773 -273506891 + AluSq SINE Alu 3 275 -38 467 146 0 11 chr1 8686773 8686862 -273506802 + (GGGA)n Simple_repeat Simple_repeat 4 91 0 3831 132 18 3 chr1 8686876 8687488 -273506176 - MER41B LTR ERV1 -14 621 1 922 133 0 0 chr1 8687488 8687631 -273506033 + L1PB2 LINE L1 6001 6143 -8 1190 185 93 0 chr1 8687643 8687902 -273505762 - LTR23 LTR ERV1 -154 283 1 2226 115 10 13 chr1 8688505 8688818 -273504846 - AluSx SINE Alu 0 312 1 4239 154 15 50 chr1 8688833 8689690 -273503974 - L1MB2 LINE L1 -17 6154 5328 510 111 0 0 chr1 8689782 8689863 -273503801 + LTR24C LTR ERV1 1 81 -554 411 54 0 0 chr1 8689910 8689966 -273503698 + LTR24C LTR ERV1 580 635 0 3599 147 26 36 chr1 8689973 8689993 -273503671 + L1MB5 LINE L1 5117 5136 -1038 1512 187 6 78 chr1 8689993 8690325 -273503339 + AluJb SINE Alu 5 312 0 3599 147 26 36 chr1 8690325 8690392 -273503272 + L1MB5 LINE L1 5136 5202 -972 596 202 73 0 chr1 8690392 8690516 -273503148 + FLAM_A SINE Alu 1 133 0 3599 147 26 36 chr1 8690516 8690831 -273502833 + L1MB5 LINE L1 5202 5519 -655 2049 163 0 0 chr1 8690831 8691131 -273502533 + AluSx SINE Alu 1 300 -12 3599 147 26 36 chr1 8691131 8691464 -273502200 + L1MB5 LINE L1 5519 5839 -335 757 183 0 0 chr1 8691464 8691595 -273502069 + FLAM_A SINE Alu 1 131 -2 3599 147 26 36 chr1 8691595 8691732 -273501932 + L1MB5 LINE L1 5839 5976 -198 754 194 127 18 chr1 8691886 8692117 -273501547 + L1MB5 LINE L1 5920 6174 0 232 179 0 0 chr1 8692127 8692166 -273501498 + Alu SINE Alu 250 288 -13 449 265 60 13 chr1 8692170 8692321 -273501343 - LTR37A LTR ERV1 -268 158 1 3057 116 27 51 chr1 8692431 8692572 -273501092 + MER41E LTR ERV1 1 144 -368 2246 117 0 7 chr1 8692572 8692879 -273500785 + AluSq SINE Alu 2 306 -7 3057 116 27 51 chr1 8692879 8692893 -273500771 + MER41E LTR ERV1 144 157 -355 2540 40 10 3 chr1 8692893 8693194 -273500470 + AluY SINE Alu 1 303 -8 3057 116 27 51 chr1 8693194 8693562 -273500102 + MER41E LTR ERV1 157 512 0 379 279 184 14 chr1 8693816 8693963 -273499701 + MER5A DNA MER1_type 18 189 0 2491 130 46 35 chr1 8694174 8694767 -273498897 - MER4E LTR ERV1 0 766 5 1209 136 45 112 chr1 8695232 8695406 -273498258 - LTR8A LTR ERV1 0 727 578 2168 150 0 6 chr1 8695406 8695720 -273497944 - AluSx SINE Alu 0 312 1 1209 136 45 112 chr1 8695720 8695829 -273497835 - LTR8A LTR ERV1 -149 578 463 1117 185 60 14 chr1 8695829 8696119 -273497545 + LTR19A LTR ERV1 1 357 -129 600 169 0 0 chr1 8696219 8696343 -273497321 + LTR19A-int LTR ERV1 1059 1182 -4404 46057 92 9 9 chr1 8696407 8696452 -273497212 + LTR19A-int LTR ERV1 1178 1222 -6497 2308 79 0 4 chr1 8696452 8696758 -273496906 + AluY SINE Alu 3 307 0 46057 92 9 9 chr1 8696758 8702285 -273491379 + LTR19A-int LTR ERV1 1222 6749 -970 2214 87 14 3 chr1 8702285 8702574 -273491090 + AluSp SINE Alu 5 296 -17 46057 92 9 9 chr1 8702574 8703545 -273490119 + LTR19A-int LTR ERV1 6749 7719 0 1875 151 158 28 chr1 8703545 8703975 -273489689 + LTR19A LTR ERV1 1 486 0 2261 150 57 50 chr1 8703975 8704435 -273489229 - LTR8A LTR ERV1 -264 463 1 2175 154 0 0 chr1 8704538 8704850 -273488814 + AluSx SINE Alu 1 312 0 225 114 29 0 chr1 8704860 8704895 -273488769 + U2 snRNA snRNA 3 38 -150 985 257 62 48 chr1 8705016 8705335 -273488329 + MER110A LTR ERV1 41 354 -114 2323 112 0 16 chr1 8705335 8705648 -273488016 + AluSg SINE Alu 1 308 -2 985 257 62 48 chr1 8705648 8705688 -273487976 + MER110A LTR ERV1 354 392 -76 3850 114 68 49 chr1 8705688 8706366 -273487298 + LTR8 LTR ERV1 1 691 0 985 257 62 48 chr1 8706366 8706425 -273487239 + MER110A LTR ERV1 392 466 -2 265 229 16 0 chr1 8706431 8706492 -273487172 + MER45 DNA AcHobo 1 62 -978 188 250 0 0 chr1 8706505 8706545 -273487119 + MIR SINE MIR 221 260 -2 627 130 52 0 chr1 8707363 8707478 -273486186 - AluSg/x SINE Alu -3 309 189 367 102 0 0 chr1 8707886 8707935 -273485729 + LTR8 LTR ERV1 643 691 0 184 256 47 0 chr1 8707981 8708024 -273485640 + MER5A DNA MER1_type 106 150 -39 28 0 0 0 chr1 8708275 8708303 -273485361 + AT_rich Low_complexity Low_complexity 1 28 0 1084 156 67 45 chr1 8708774 8708998 -273484666 + AluJb SINE Alu 79 307 -5 2219 112 0 26 chr1 8709017 8709321 -273484343 - AluSx SINE Alu -16 296 1 2235 110 7 10 chr1 8710093 8710401 -273483263 + AluSx SINE Alu 1 307 -5 997 147 13 6 chr1 8710879 8711036 -273482628 - AluJo/FRAM SINE Alu -11 301 144 251 154 0 19 chr1 8711038 8711090 -273482574 + Alu SINE Alu 252 302 0 2279 112 0 0 chr1 8711136 8711430 -273482234 - AluSq SINE Alu -19 294 1 2136 104 4 0 chr1 8712685 8712964 -273480700 + AluSx SINE Alu 1 280 -32 417 123 0 0 chr1 8713001 8713066 -273480598 + (CA)n Simple_repeat Simple_repeat 2 66 0 669 245 55 19 chr1 8713770 8714027 -273479637 + L2 LINE L2 2250 2515 -799 845 114 0 53 chr1 8714035 8714166 -273479498 - FLAM_C SINE Alu -14 129 6 410 273 140 49 chr1 8714169 8714649 -273479015 + L2 LINE L2 2520 3064 -249 2152 113 7 0 chr1 8714649 8714965 -273478699 + AluSx SINE Alu 1 318 0 410 273 140 49 chr1 8714965 8715123 -273478541 + L2 LINE L2 3064 3206 -107 958 166 0 0 chr1 8715324 8715469 -273478195 + AluJo SINE Alu 1 145 -167 1816 142 13 43 chr1 8715470 8715614 -273478050 + AluSx SINE Alu 1 133 -179 1934 149 7 10 chr1 8715614 8715910 -273477754 + AluSx SINE Alu 4 298 -14 1816 142 13 43 chr1 8715910 8716068 -273477596 + AluSx SINE Alu 133 294 -18 207 0 0 0 chr1 8716225 8716248 -273477416 + (TCC)n Simple_repeat Simple_repeat 1 23 0 698 134 188 54 chr1 8716614 8716763 -273476901 - AluJo/FRAM SINE Alu -10 302 134 2260 71 39 0 chr1 8716763 8717043 -273476621 - AluY SINE Alu -20 291 1 2436 99 0 0 chr1 8717047 8717350 -273476314 - AluSx SINE Alu -9 303 1 2065 153 0 7 chr1 8717354 8717662 -273476002 - AluSx SINE Alu -6 306 1 201 293 116 80 chr1 8717984 8718209 -273475455 + L2 LINE L2 3034 3266 -6 2397 107 0 0 chr1 8718209 8718519 -273475145 + AluSx SINE Alu 1 310 -2 248 321 76 23 chr1 8718975 8719106 -273474558 + MIR SINE MIR 103 240 -22 1760 116 0 0 chr1 8719730 8719955 -273473709 + AluSg/x SINE Alu 73 297 -13 500 309 15 13 chr1 8720139 8720407 -273473257 - MER115 DNA AcHobo -339 354 25 2419 92 0 0 chr1 8720427 8720721 -273472943 - AluSx SINE Alu -18 294 1 335 296 165 24 chr1 8720889 8721095 -273472569 + MIR SINE MIR 7 241 -21 2324 96 3 0 chr1 8721630 8721921 -273471743 + AluSx SINE Alu 1 292 -20 396 0 0 0 chr1 8721925 8721969 -273471695 + (CA)n Simple_repeat Simple_repeat 2 45 0 2039 117 10 29 chr1 8722007 8722314 -273471350 + AluSx SINE Alu 1 301 -11 1391 115 0 0 chr1 8722737 8722919 -273470745 + AluSg/x SINE Alu 129 310 0 1653 177 71 159 chr1 8723123 8723756 -273469908 + MER63C DNA MER1_type 1 531 -529 947 205 91 24 chr1 8723756 8723966 -273469698 + MER58A DNA MER1_type 1 224 0 1653 177 71 159 chr1 8723966 8724243 -273469421 + MER63C DNA MER1_type 531 831 -99 214 98 39 0 chr1 8724243 8724294 -273469370 + (TA)n Simple_repeat Simple_repeat 2 54 0 344 207 135 0 chr1 8724294 8724405 -273469259 + MER63 DNA MER1_type 801 926 -135 1794 77 65 35 chr1 8724410 8724671 -273468993 + AluSg SINE Alu 26 294 -16 1698 206 3 0 chr1 8724674 8724966 -273468698 - AluJo SINE Alu -19 293 1 403 162 15 0 chr1 8725000 8725068 -273468596 - FRAM/FAM SINE Alu -108 68 1 447 206 98 0 chr1 8725074 8725176 -273468488 + MER63 DNA MER1_type 946 1057 -3 2326 79 3 7 chr1 8725403 8725694 -273467970 + AluSx SINE Alu 1 290 -22 212 75 0 25 chr1 8725697 8725737 -273467927 + (CAAA)n Simple_repeat Simple_repeat 2 40 0 236 259 19 0 chr1 8725834 8725888 -273467776 + L3 LINE CR1 880 934 -643 1174 202 82 32 chr1 8726504 8726679 -273466985 + MLT1B LTR MaLR 2 167 -223 1826 116 33 14 chr1 8726679 8726955 -273466709 + AluJb SINE Alu 1 281 -31 * 2283 113 0 3 chr1 8726954 8727256 -273466408 - AluSx SINE Alu -11 301 1 1174 202 82 32 chr1 8727256 8727500 -273466164 + MLT1B LTR MaLR 468 373 -17 2122 99 11 3 chr1 8728974 8729278 -273464386 + AluSx SINE Alu 1 306 0 2157 123 0 10 chr1 8729278 8729586 -273464078 + AluSx SINE Alu 1 305 -7 1460 219 26 6 chr1 8730371 8730718 -273462946 + L1MC4 LINE L1 7280 7633 -409 958 170 0 6 chr1 8730818 8730977 -273462687 - AluSq SINE Alu -19 294 137 1285 170 208 0 chr1 8731096 8731523 -273462141 + Charlie1b DNA MER1_type 6 523 0 2175 95 63 0 chr1 8731729 8732014 -273461650 + AluSq SINE Alu 1 303 -10 241 202 228 70 chr1 8732717 8732788 -273460876 + MER112 DNA MER1_type 8 66 -194 348 24 0 0 chr1 8732788 8732829 -273460835 + (TG)n Simple_repeat Simple_repeat 1 41 0 241 202 228 70 chr1 8732829 8732871 -273460793 + MER112 DNA MER1_type 66 139 -121 198 91 0 0 chr1 8732882 8732915 -273460749 + (TTTA)n Simple_repeat Simple_repeat 4 36 0 1793 137 128 18 chr1 8732927 8733097 -273460567 + THE1C LTR MaLR 2 152 -223 198 0 0 0 chr1 8733097 8733119 -273460545 + (TC)n Simple_repeat Simple_repeat 1 22 0 1793 137 128 18 chr1 8733119 8733285 -273460379 + THE1C LTR MaLR 152 375 0 523 124 165 10 chr1 8733285 8733382 -273460282 - AluJb SINE Alu -200 112 1 291 207 81 58 chr1 8733382 8733469 -273460195 + MER112 DNA MER1_type 167 255 -5 423 200 161 141 chr1 8734198 8734349 -273459315 + L1M4 LINE L1 3670 3817 -2329 1997 105 14 18 chr1 8734349 8734662 -273459002 + AluSx SINE Alu 1 312 0 423 200 161 141 chr1 8734662 8734775 -273458889 + L1M4 LINE L1 3817 3926 -2220 1979 156 17 3 chr1 8734775 8735077 -273458587 - AluSx SINE Alu -6 306 1 423 200 161 141 chr1 8735077 8735215 -273458449 + L1M4 LINE L1 3926 4082 -2064 248 235 202 45 chr1 8735219 8735466 -273458198 + L1MEd LINE L1 586 871 -5248 1728 211 7 45 chr1 8735474 8735563 -273458101 + L1M4 LINE L1 4709 4800 -1346 1830 104 94 14 chr1 8735563 8735850 -273457814 + AluSx SINE Alu 1 310 -2 1728 211 7 45 chr1 8735850 8735976 -273457688 + L1M4 LINE L1 4800 4929 -1217 1696 174 9 25 chr1 8735976 8736110 -273457554 + AluJo SINE Alu 1 136 -176 1993 142 0 32 chr1 8736110 8736426 -273457238 + AluSx SINE Alu 1 306 -6 1696 174 9 25 chr1 8736426 8736608 -273457056 + AluJo SINE Alu 136 312 0 1728 211 7 45 chr1 8736608 8736836 -273456828 + L1M4 LINE L1 4929 5136 -1010 502 298 35 67 chr1 8736844 8737126 -273456538 + L1MEd LINE L1 2253 2525 -3604 369 162 10 30 chr1 8737301 8737400 -273456264 + GA-rich Low_complexity Low_complexity 2 98 0 5519 141 72 15 chr1 8737400 8738125 -273455539 + L1MC1 LINE L1 5114 5929 -404 2289 82 0 13 chr1 8738125 8738430 -273455234 + AluSc SINE Alu 1 301 -8 5519 141 72 15 chr1 8738430 8738855 -273454809 + L1MC1 LINE L1 5929 6328 -5 686 179 42 2 chr1 8738861 8739098 -273454566 + AluJ SINE Alu 2 290 -22 27 0 0 0 chr1 8739118 8739145 -273454519 + AT_rich Low_complexity Low_complexity 1 27 0 350 222 56 58 chr1 8739164 8739312 -273454352 + L1MCa LINE L1 1941 2064 -4362 425 67 67 0 chr1 8739313 8739417 -273454247 + (TA)n Simple_repeat Simple_repeat 2 112 0 302 279 29 44 chr1 8739421 8739557 -273454107 + L1MCa LINE L1 1931 2064 -4362 200 59 29 0 chr1 8739558 8739592 -273454072 + (TA)n Simple_repeat Simple_repeat 2 36 0 306 197 61 0 chr1 8739772 8739838 -273453826 + L1MCa LINE L1 1995 2064 -4362 * 375 285 30 17 chr1 8739785 8739945 -273453719 - L1MC4 LINE L1 -1340 6982 1906 268 43 43 0 chr1 8739946 8739992 -273453672 + (TA)n Simple_repeat Simple_repeat 2 49 0 2350 120 0 0 chr1 8740002 8740310 -273453354 + AluSx SINE Alu 1 308 -4 434 202 141 46 chr1 8740321 8740667 -273452997 + L1MEd LINE L1 844 1250 -4869 554 310 35 4 chr1 8740695 8740924 -273452740 + L1M4 LINE L1 4460 4695 -1451 1877 170 3 0 chr1 8741053 8741335 -273452329 + AluJo SINE Alu 1 283 -29 652 266 144 9 chr1 8741501 8741646 -273452018 + MIR SINE MIR 3 127 -135 2362 102 0 3 chr1 8741646 8741950 -273451714 + AluSg SINE Alu 1 303 -7 652 266 144 9 chr1 8741950 8742033 -273451631 + MIR SINE MIR 127 262 0 1960 148 7 7 chr1 8742044 8742347 -273451317 + AluSx SINE Alu 1 303 -9 2374 89 3 0 chr1 8742592 8742895 -273450769 - AluSq SINE Alu -9 304 1 218 230 71 95 chr1 8742949 8743075 -273450589 + MIR3 SINE MIR 82 204 -4 2242 121 20 0 chr1 8743418 8743724 -273449940 + AluSx SINE Alu 1 312 0 950 176 78 5 chr1 8744815 8745019 -273448645 - MER20 DNA MER1_type 0 219 1 308 262 85 32 chr1 8745261 8745424 -273448240 + MIR SINE MIR 15 187 -62 2585 52 10 7 chr1 8745541 8745849 -273447815 - AluY SINE Alu -2 309 1 1982 134 33 16 chr1 8745943 8746248 -273447416 - AluJo SINE Alu -2 310 1 880 106 29 39 chr1 8746400 8746800 -273446864 + (CA)n Simple_repeat Simple_repeat 1 396 0 556 134 43 12 chr1 8746853 8747107 -273446557 + (CA)n Simple_repeat Simple_repeat 1 262 0 464 145 120 51 chr1 8747225 8747342 -273446322 - L2 LINE L2 0 3313 3189 1963 163 10 3 chr1 8747419 8747726 -273445938 + AluJb SINE Alu 3 311 -1 1914 158 3 23 chr1 8747736 8748039 -273445625 + AluJo SINE Alu 3 299 -13 318 264 32 8 chr1 8748757 8748882 -273444782 - L2 LINE L2 -292 2980 2853 2132 123 0 0 chr1 8749008 8749317 -273444347 + AluSx SINE Alu 1 309 0 246 160 0 0 chr1 8749475 8749525 -273444139 + L1M4 LINE L1 5408 5457 -727 508 68 55 0 chr1 8749542 8749615 -273444049 - L1MA8 LINE L1 -341 5950 5874 1101 173 19 39 chr1 8749699 8749776 -273443888 - AluJo SINE Alu -103 209 132 2296 112 3 10 chr1 8749776 8750090 -273443574 - AluSx SINE Alu 0 312 1 2813 19 0 3 chr1 8750091 8750403 -273443261 - AluY SINE Alu 0 311 1 1101 173 19 39 chr1 8750403 8750531 -273443133 - AluJo SINE Alu -179 133 6 184 364 11 0 chr1 8750670 8750758 -273442906 - L2 LINE L2 -785 2529 2441 969 201 91 80 chr1 8750961 8751177 -273442487 + LTR56 LTR ERV1 9 221 -216 2385 83 0 13 chr1 8751177 8751478 -273442186 + AluSg SINE Alu 1 297 -13 969 201 91 80 chr1 8751478 8751708 -273441956 + LTR56 LTR ERV1 221 437 0 391 186 145 40 chr1 8751998 8752122 -273441542 + MIR SINE MIR 14 150 -112 681 107 34 6 chr1 8752123 8752359 -273441305 + AluJ SINE Alu 1 292 -20 259 284 54 0 chr1 8752388 8752462 -273441202 + MIR SINE MIR 180 257 -5 198 254 45 15 chr1 8752492 8752559 -273441105 - MIR SINE MIR -131 131 63 1739 169 3 23 chr1 8752638 8752940 -273440724 - AluJb SINE Alu -16 296 1 1883 170 10 6 chr1 8753104 8753415 -273440249 + AluJo SINE Alu 1 312 0 573 211 59 0 chr1 8754123 8754275 -273439389 + MER20 DNA MER1_type 56 216 -3 2477 86 0 0 chr1 8754313 8754614 -273439050 + AluSx SINE Alu 1 301 -11 834 232 75 46 chr1 8754640 8754854 -273438810 - MIR SINE MIR -10 252 29 2201 83 0 0 chr1 8754854 8755118 -273438546 - AluSq SINE Alu -11 302 39 834 232 75 46 chr1 8755118 8755144 -273438520 - MIR SINE MIR -233 29 5 2509 81 7 0 chr1 8756477 8756785 -273436879 - AluSq SINE Alu -3 310 1 2166 94 0 0 chr1 8757532 8757808 -273435856 + AluSx SINE Alu 1 276 -36 389 279 85 0 chr1 8758287 8758452 -273435212 + (CCCCAG)n Simple_repeat Simple_repeat 1 179 0 618 124 171 0 chr1 8758708 8758813 -273434851 + FRAM SINE Alu 46 168 -8 221 302 93 35 chr1 8758873 8759045 -273434619 - L2 LINE L2 -665 2649 2468 2129 116 19 41 chr1 8759078 8759396 -273434268 + AluSx SINE Alu 1 311 -1 581 272 241 18 chr1 8759662 8760044 -273433620 + MLT1J LTR MaLR 43 509 -2 3532 176 48 38 chr1 8760626 8761003 -273432661 - L1MB7 LINE L1 -1 6183 5811 2152 107 3 10 chr1 8761003 8761303 -273432361 - AluSx SINE Alu -13 299 2 3532 176 48 38 chr1 8761303 8761598 -273432066 - L1MB7 LINE L1 -373 5811 5498 1351 145 123 45 chr1 8761598 8761747 -273431917 - AluJo SINE Alu -22 290 154 2411 93 0 0 chr1 8761747 8762047 -273431617 - AluSq SINE Alu -11 302 3 1351 145 123 45 chr1 8762047 8762166 -273431498 - AluJo SINE Alu -158 154 1 3532 176 48 38 chr1 8762166 8762339 -273431325 - L1MB7 LINE L1 -686 5498 5328 285 128 0 0 chr1 8762339 8762386 -273431278 + (TC)n Simple_repeat Simple_repeat 2 48 0 2232 125 3 0 chr1 8762394 8762699 -273430965 - AluSx SINE Alu -6 306 1 1206 198 24 10 chr1 8762699 8762988 -273430676 - L1MB7 LINE L1 -809 5337 5042 1019 221 36 50 chr1 8762974 8763064 -273430600 - L1MB7 LINE L1 -1346 4800 4710 * 2040 140 7 0 chr1 8763064 8763357 -273430307 - AluSx SINE Alu -13 299 5 1019 221 36 50 chr1 8763357 8763624 -273430040 - L1MB7 LINE L1 -1436 4710 4448 686 169 46 23 chr1 8763699 8763829 -273429835 + AluJo/FLAM SINE Alu 1 133 -169 2177 110 16 7 chr1 8763829 8764139 -273429525 + AluSq SINE Alu 1 313 0 388 288 137 36 chr1 8764151 8764290 -273429374 - L1ME3A LINE L1 -23 6147 5995 555 169 0 0 chr1 8764313 8764402 -273429262 - FLAM_A SINE Alu -46 96 8 907 208 11 60 chr1 8764457 8764722 -273428942 - L1ME3A LINE L1 -224 5946 5695 23 0 0 0 chr1 8765210 8765233 -273428431 + AT_rich Low_complexity Low_complexity 1 23 0 2284 94 3 7 chr1 8765753 8766052 -273427612 + AluY SINE Alu 3 300 -11 6798 116 3 8 chr1 8766056 8767056 -273426608 + HERVFH19I LTR ERV1 1210 2204 -5515 2182 74 0 0 chr1 8767160 8767417 -273426247 - AluY SINE Alu -54 257 1 2610 121 36 5 chr1 8767443 8767832 -273425832 + HERVFH19I LTR ERV1 1 401 -7318 * 2877 137 11 4 chr1 8767825 8768292 -273425372 + HERVFH19I LTR ERV1 702 1171 -4415 824 114 14 2 chr1 8768677 8768900 -273424764 + AluJ SINE Alu 29 300 -12 294 202 83 89 chr1 8769198 8769382 -273424282 + MLT1C LTR MaLR 103 268 -199 2037 106 24 3 chr1 8769426 8769719 -273423945 + AluSx SINE Alu 1 299 -13 1706 161 4 4 chr1 8770024 8770304 -273423360 - AluJb SINE Alu -18 294 15 1957 114 19 62 chr1 8770831 8771156 -273422508 - AluSx SINE Alu -1 311 1 183 337 101 6 chr1 8771189 8771358 -273422306 + L2 LINE L2 2468 2652 -662 629 123 170 0 chr1 8771421 8771527 -273422137 - FRAM SINE Alu -7 169 46 1366 113 10 0 chr1 8772872 8773076 -273420588 + MLT2A2 LTR ERVL 1 206 -247 832 116 68 27 chr1 8773077 8773223 -273420441 + AluSq/x SINE Alu 1 152 -161 351 153 0 0 chr1 8773224 8773283 -273420381 + Alu SINE Alu 241 299 -2 * 1817 81 18 56 chr1 8773265 8773464 -273420200 + MLT2A2 LTR ERVL 181 386 -67 2161 86 30 7 chr1 8773464 8773765 -273419899 + AluY SINE Alu 1 308 -3 1817 81 18 56 chr1 8773765 8773785 -273419879 + MLT2A2 LTR ERVL 386 405 -48 1909 147 3 3 chr1 8773785 8774085 -273419579 + AluSx SINE Alu 1 300 -12 1817 81 18 56 chr1 8774085 8774148 -273419516 + MLT2A2 LTR ERVL 405 453 0 1839 157 10 13 chr1 8774819 8774997 -273418667 - AluJb SINE Alu 0 312 134 2232 96 0 7 chr1 8774997 8775299 -273418365 - AluSq SINE Alu -13 300 1 1839 157 10 13 chr1 8775299 8775433 -273418231 - AluJb SINE Alu -178 134 1 2123 192 47 5 chr1 8775713 8776141 -273417523 + L1MB4 LINE L1 5696 6141 -39 248 189 0 0 chr1 8776141 8776178 -273417486 + Alu SINE Alu 1 37 -265 604 124 0 0 chr1 8776178 8776267 -273417397 - AluSg/x SINE Alu -9 301 213 1048 113 38 6 chr1 8776273 8776433 -273417231 - AluSq SINE Alu -148 165 1 279 277 64 14 chr1 8776445 8776586 -273417078 + L2 LINE L2 2700 2847 -467 233 211 197 0 chr1 8776590 8776661 -273417003 - MLT1E2 LTR MaLR -368 258 174 980 153 13 0 chr1 8776677 8776834 -273416830 - FRAM SINE Alu -1 175 17 1550 164 54 0 chr1 8777059 8777339 -273416325 + AluJb SINE Alu 1 295 -17 1769 101 4 4 chr1 8777395 8777642 -273416022 - AluSq SINE Alu -66 247 1 22 56 0 0 chr1 8778082 8778118 -273415546 + AT_rich Low_complexity Low_complexity 1 36 0 611 214 29 46 chr1 8778130 8778303 -273415361 + L1MD2 LINE L1 6180 6349 -10 * 1361 168 51 9 chr1 8778279 8778580 -273415084 + L1MD3 LINE L1 7600 7994 -1 2511 51 3 6 chr1 8778782 8779094 -273414570 + AluSq SINE Alu 3 313 0 1310 119 0 10 chr1 8779696 8779890 -273413774 - AluSx SINE Alu -57 255 64 1650 125 33 22 chr1 8779898 8780170 -273413494 - AluSx SINE Alu -23 289 15 1833 139 14 7 chr1 8780656 8780950 -273412714 - AluJb SINE Alu -16 296 1 790 138 69 0 chr1 8780954 8781097 -273412567 - MLT1B LTR MaLR -215 175 23 337 189 0 0 chr1 8781097 8781150 -273412514 + Alu SINE Alu 1 53 -249 * 361 65 0 0 chr1 8781145 8781191 -273412473 + FLAM SINE Alu 81 126 -7 2434 80 0 0 chr1 8781204 8781515 -273412149 + AluSx SINE Alu 1 311 -1 199 342 17 42 chr1 8781731 8781851 -273411813 + L3b LINE CR1 1218 1334 -249 201 138 0 0 chr1 8782171 8782200 -273411464 + (GGAA)n Simple_repeat Simple_repeat 3 31 0 832 171 0 11 chr1 8782202 8782383 -273411281 + GA-rich Low_complexity Low_complexity 1 179 0 1742 131 26 35 chr1 8782385 8782698 -273410966 + AluSx SINE Alu 1 310 -2 547 190 107 133 chr1 8782978 8783325 -273410339 - Charlie4a DNA MER1_type -19 489 152 952 139 0 0 chr1 8783352 8783523 -273410141 + FRAM SINE Alu 2 172 0 653 171 8 0 chr1 8784491 8784614 -273409050 - L1MB7 LINE L1 -16 6168 6045 28 29 0 0 chr1 8784615 8784650 -273409014 + AT_rich Low_complexity Low_complexity 1 35 0 1327 155 5 0 chr1 8784656 8784869 -273408795 - AluJo SINE Alu -24 288 75 2076 104 21 0 chr1 8785052 8785341 -273408323 + AluSx SINE Alu 1 295 -17 257 0 0 29 chr1 8786118 8786152 -273407512 + (TTCA)n Simple_repeat Simple_repeat 2 34 0 276 272 93 25 chr1 8786251 8786444 -273407220 + MIR SINE MIR 2 197 -31 1941 108 29 55 chr1 8786546 8786853 -273406811 + AluSq SINE Alu 1 299 -14 265 298 46 53 chr1 8788052 8788183 -273405481 + MER5A DNA MER1_type 46 175 -14 1948 109 30 46 chr1 8788260 8788562 -273405102 - AluSx SINE Alu -15 297 1 841 170 0 0 chr1 8788975 8789116 -273404548 + FLAM_C SINE Alu 1 141 -2 1591 204 31 28 chr1 8789156 8789544 -273404120 + MLT2C1 LTR ERVL 1 389 -8 673 141 0 113 chr1 8789752 8789894 -273403770 - AluJo SINE Alu -178 134 9 1406 131 49 16 chr1 8789898 8790143 -273403521 - AluJo SINE Alu -18 294 42 496 306 153 0 chr1 8790558 8790774 -273402890 - MIR SINE MIR 0 262 14 2195 100 0 0 chr1 8792349 8792639 -273401025 - AluY SINE Alu -21 290 1 203 322 17 0 chr1 8792831 8792890 -273400774 - L2 LINE L2 -10 3303 3244 2218 103 3 0 chr1 8793285 8793586 -273400078 + AluSx SINE Alu 3 304 -8 895 132 0 0 chr1 8794178 8794314 -273399350 - AluJb SINE Alu -176 136 1 240 111 0 0 chr1 8794340 8794376 -273399288 + (CA)n Simple_repeat Simple_repeat 2 37 0 1735 156 30 7 chr1 8794472 8794767 -273398897 - AluJo SINE Alu -10 302 1 2022 85 26 29 chr1 8795222 8795528 -273398136 - AluSg SINE Alu -5 305 1 2186 91 13 3 chr1 8795540 8795849 -273397815 - AluSx SINE Alu 0 312 1 1506 162 0 81 chr1 8796575 8796722 -273396942 + AluJb SINE Alu 1 108 -204 2233 103 0 3 chr1 8796722 8797023 -273396641 + AluSx SINE Alu 2 301 -11 1506 162 0 81 chr1 8797023 8797208 -273396456 + AluJb SINE Alu 108 306 -6 224 209 0 0 chr1 8799624 8799667 -273393997 - L2 LINE L2 0 3272 3230 297 280 118 0 chr1 8799702 8799795 -273393869 - L2 LINE L2 -338 2976 2873 297 322 68 1 chr1 8800067 8800213 -273393451 + MIR SINE MIR 18 169 -67 1971 148 0 0 chr1 8800441 8800739 -273392925 - AluJo SINE Alu -14 298 1 2170 92 7 13 chr1 8801567 8801872 -273391792 + AluSx SINE Alu 1 303 -9 531 287 51 19 chr1 8802091 8802207 -273391457 - MER2 DNA MER2_type 0 345 234 774 167 8 0 chr1 8802207 8802339 -273391325 + FLAM_C SINE Alu 1 133 0 531 287 51 19 chr1 8802339 8802438 -273391226 - MER2 DNA MER2_type -111 234 123 2163 92 3 0 chr1 8802439 8802733 -273390931 + AluSq SINE Alu 1 295 -18 774 134 84 0 chr1 8802735 8802854 -273390810 + AluSg/x SINE Alu 145 273 -39 590 215 25 0 chr1 8802861 8802982 -273390682 - MER2 DNA MER2_type -220 125 2 1378 122 22 17 chr1 8803502 8803732 -273389932 - AluJb SINE Alu 0 312 82 2104 131 0 0 chr1 8803833 8804131 -273389533 + AluSx SINE Alu 1 298 -14 454 183 0 24 chr1 8804131 8804207 -273389457 - FLAM_A SINE Alu -24 118 45 626 286 57 40 chr1 8804427 8804675 -273388989 - MIR SINE MIR -3 259 8 2789 199 46 33 chr1 8804768 8805350 -273388314 - MLT1E LTR MaLR -3 590 1 221 0 0 33 chr1 8806218 8806248 -273387416 + (TTTTA)n Simple_repeat Simple_repeat 2 30 0 1058 162 5 79 chr1 8806787 8806948 -273386716 - MER20 DNA MER1_type -4 215 72 2220 119 0 0 chr1 8806948 8807251 -273386413 - AluSx SINE Alu -9 303 1 1058 162 5 79 chr1 8807251 8807305 -273386359 - MER20 DNA MER1_type -147 72 16 907 83 15 8 chr1 8808010 8808142 -273385522 - AluSp SINE Alu -180 133 1 255 125 0 0 chr1 8809549 8809589 -273384075 + (T)n Simple_repeat Simple_repeat 1 40 0 638 281 50 15 chr1 8810574 8810657 -273383007 - MLT1L LTR MaLR 0 615 536 1596 170 23 13 chr1 8810657 8810782 -273382882 + AluJo SINE Alu 1 123 -189 183 42 0 0 chr1 8810782 8810806 -273382858 + (CAAAC)n Simple_repeat Simple_repeat 1 24 0 1596 170 23 13 chr1 8810806 8810980 -273382684 + AluJo SINE Alu 123 303 -9 638 281 50 15 chr1 8810980 8811095 -273382569 - MLT1L LTR MaLR -79 536 410 476 238 57 0 chr1 8811135 8811257 -273382407 - MLT1L LTR MaLR -324 291 163 259 284 12 12 chr1 8811300 8811381 -273382283 - MLT1L LTR MaLR -534 81 1 355 358 0 0 chr1 8811452 8811547 -273382117 + L1MC4 LINE L1 6614 6708 -1334 2114 112 3 3 chr1 8811568 8811864 -273381800 + AluSq SINE Alu 3 298 -15 180 77 0 0 chr1 8811981 8812007 -273381657 + (T)n Simple_repeat Simple_repeat 1 26 0 2098 97 16 10 chr1 8812533 8812842 -273380822 - AluSx SINE Alu -1 311 1 1971 115 0 17 chr1 8813083 8813411 -273380253 - AluSq SINE Alu 0 323 1 1362 179 80 7 chr1 8813413 8813687 -273379977 - AluJb SINE Alu -18 294 1 1988 147 0 6 chr1 8814867 8815181 -273378483 - AluSx SINE Alu 0 312 1 363 169 0 0 chr1 8816601 8816660 -273377004 - AluJ/FLAM SINE Alu -233 69 11 885 137 82 0 chr1 8816666 8816812 -273376852 - AluJo/FRAM SINE Alu -11 301 144 2096 120 3 0 chr1 9017360 9017660 -273176004 + AluSq SINE Alu 1 301 -12 205 346 0 26 chr1 9017714 9017792 -273175872 - MIR SINE MIR -70 192 117 2630 102 24 0 chr1 9019989 9020399 -273173265 - MER83 LTR ERV1 -28 420 1 1020 238 114 76 chr1 9020399 9020697 -273172967 + MLT1D LTR MaLR 28 352 -153 1919 137 0 64 chr1 9020697 9021026 -273172638 - AluSx SINE Alu -4 308 1 1020 238 114 76 chr1 9021026 9021187 -273172477 + MLT1D LTR MaLR 352 505 0 409 255 51 51 chr1 9021434 9021591 -273172073 - MIR SINE MIR -1 261 105 1632 174 27 7 chr1 9021633 9021926 -273171738 + L1MB5 LINE L1 5874 6172 -2 2219 69 0 14 chr1 9024305 9024595 -273169069 - AluSc SINE Alu -20 289 4 453 295 36 24 chr1 9024928 9025094 -273168570 - MER5A DNA MER1_type -1 188 21 192 77 0 0 chr1 9026338 9026364 -273167300 + (TA)n Simple_repeat Simple_repeat 2 27 0 300 137 0 0 chr1 9028144 9028195 -273165469 + (TCC)n Simple_repeat Simple_repeat 2 52 0 1613 164 72 10 chr1 9028195 9028487 -273165177 - AluSg SINE Alu 0 310 1 34 0 0 0 chr1 9028492 9028526 -273165138 + AT_rich Low_complexity Low_complexity 1 34 0 1851 138 3 3 chr1 9028574 9029024 -273164640 - AluJb SINE Alu 0 450 1 211 147 0 0 chr1 9029308 9029342 -273164322 - MIR SINE MIR -28 234 201 2034 119 3 28 chr1 9029581 9029901 -273163763 - AluSx SINE Alu 0 312 1 1646 140 37 34 chr1 9029902 9030224 -273163440 - THE1B LTR MaLR -41 323 1 407 243 6 105 chr1 9030308 9030489 -273163175 - MLT1K LTR MaLR 0 588 426 905 199 21 16 chr1 9030513 9030699 -273162965 + MER53 DNA DNA 3 189 0 300 127 0 0 chr1 9031920 9031975 -273161689 + (GA)n Simple_repeat Simple_repeat 1 55 0 508 283 337 4 chr1 9032693 9033159 -273160505 - L2 LINE L2 -867 2447 1827 1181 259 97 12 chr1 9033167 9033591 -273160073 - MLT1C LTR MaLR -1 466 7 1011 96 0 15 chr1 9033892 9034061 -273159603 - FLAM_C SINE Alu 0 167 1 207 100 0 0 chr1 9034939 9034969 -273158695 + (TTCC)n Simple_repeat Simple_repeat 1 30 0 194 241 35 17 chr1 9036272 9036330 -273157334 + MIR SINE MIR 88 146 -62 1917 136 10 3 chr1 9036462 9036756 -273156908 - AluJb SINE Alu -16 296 1 258 160 0 0 chr1 9036756 9036806 -273156858 - AluJb SINE Alu -166 136 87 262 343 73 7 chr1 9037223 9037360 -273156304 + MIR SINE MIR 102 247 -15 2202 97 0 3 chr1 9038236 9038526 -273155138 - AluSq SINE Alu -24 289 1 236 210 12 111 chr1 9038621 9038638 -273155026 - L2 LINE L2 -2 3311 3294 2041 131 0 7 chr1 9038638 9038935 -273154729 - AluSx SINE Alu -17 295 1 236 210 12 111 chr1 9038935 9038998 -273154666 - L2 LINE L2 -19 3294 3239 453 267 215 0 chr1 9039193 9039365 -273154299 + MIR SINE MIR 4 212 -50 192 344 62 0 chr1 9039406 9039502 -273154162 - MIR SINE MIR -97 165 64 813 165 0 8 chr1 9040527 9040660 -273153004 + FLAM_C SINE Alu 1 132 -1 320 330 160 53 chr1 9040884 9041184 -273152480 - L1MC4a LINE L1 -6 6115 5784 2109 63 0 0 chr1 9041475 9041730 -273151934 - AluY SINE Alu -56 255 1 742 112 0 8 chr1 9041755 9041880 -273151784 - MER4A LTR ERV1 -540 124 1 385 156 0 0 chr1 9041880 9041943 -273151721 - MER4E LTR ERV1 -716 63 1 271 267 58 0 chr1 9042099 9042185 -273151479 + MIR SINE MIR 61 151 -57 509 277 45 28 chr1 9042581 9042758 -273150906 + MIR SINE MIR 13 192 -70 2195 111 0 16 chr1 9042908 9043223 -273150441 - AluSx SINE Alu -2 310 1 1955 151 17 0 chr1 9043969 9044268 -273149396 + AluSx SINE Alu 1 304 -8 238 214 0 119 chr1 9044879 9044963 -273148701 - MER91 DNA MER1_type 0 140 67 2092 138 0 3 chr1 9045458 9045769 -273147895 + AluSx SINE Alu 1 310 -2 188 180 0 80 chr1 9046836 9046886 -273146778 - L2 LINE L2 -3 3310 3265 425 130 29 0 chr1 9046938 9047007 -273146657 + AluJ/FLAM SINE Alu 6 76 -236 582 217 12 103 chr1 9047250 9047458 -273146206 - MIR SINE MIR -62 146 10 405 300 73 13 chr1 9047571 9047608 -273146056 - MIR SINE MIR -102 160 127 2218 104 7 0 chr1 9047608 9047907 -273145757 + AluSx SINE Alu 1 301 -11 405 300 73 13 chr1 9047907 9048019 -273145645 - MIR SINE MIR -135 127 2 716 189 86 0 chr1 9048823 9048998 -273144666 + L1MB8 LINE L1 5989 6178 0 1518 156 130 7 chr1 9049065 9049325 -273144339 + AluJo SINE Alu 1 296 -6 2021 110 0 46 chr1 9049325 9049692 -273143972 + AluSx SINE Alu 1 312 0 278 365 19 0 chr1 9049997 9050104 -273143560 + MIR3 SINE MIR 74 182 -26 2095 125 3 3 chr1 9050482 9050778 -273142886 + AluSx SINE Alu 1 296 -16 194 241 35 17 chr1 9050910 9050968 -273142696 - MIR SINE MIR -62 146 88 207 100 0 0 chr1 9052271 9052301 -273141363 + (GGAA)n Simple_repeat Simple_repeat 1 30 0 1011 96 0 15 chr1 9053179 9053314 -273140350 + FLAM_C SINE Alu 1 133 0 1197 257 97 12 chr1 9053630 9054054 -273139610 + MLT1C LTR MaLR 7 466 -1 883 296 259 10 chr1 9054062 9054758 -273138906 + L2 LINE L2 1827 2695 -619 2331 97 0 0 chr1 9054760 9055060 -273138604 - AluSg SINE Alu -10 300 1 1167 157 0 2 chr1 9057108 9057466 -273136198 + (TCCA)n Simple_repeat Simple_repeat 1 536 0 227 156 67 0 chr1 9057474 9057519 -273136145 + (CCCA)n Simple_repeat Simple_repeat 3 50 0 508 185 32 0 chr1 9057536 9057693 -273135971 + (TCCA)n Simple_repeat Simple_repeat 4 165 0 1934 75 47 0 chr1 9059667 9059921 -273133743 - AluSx SINE Alu -16 296 31 2147 97 7 0 chr1 9060546 9060844 -273132820 - AluSq SINE Alu -13 300 1 217 293 0 27 chr1 9061605 9061680 -273131984 + G-rich Low_complexity Low_complexity 2 74 0 245 217 0 43 chr1 9061778 9061847 -273131817 + G-rich Low_complexity Low_complexity 1 66 0 597 220 162 0 chr1 9061910 9062083 -273131581 - MER58A DNA MER1_type -12 212 12 342 209 0 0 chr1 9063239 9063297 -273130367 - MER58A DNA MER1_type 0 224 167 622 164 0 0 chr1 9063297 9063401 -273130263 - MER58A DNA MER1_type -1 106 3 247 274 16 0 chr1 9063854 9063916 -273129748 + (CA)n Simple_repeat Simple_repeat 1 63 0 444 201 17 17 chr1 9064365 9064544 -273129120 + (TG)n Simple_repeat Simple_repeat 2 180 0 381 131 0 0 chr1 9065483 9065544 -273128120 + (CA)n Simple_repeat Simple_repeat 2 62 0 2353 75 0 0 chr1 9066244 9066538 -273127126 + AluSx SINE Alu 8 301 -11 320 330 160 53 chr1 9066789 9067089 -273126575 + L1MC4a LINE L1 5784 6115 -6 813 165 0 8 chr1 9067313 9067446 -273126218 - FLAM_C SINE Alu -1 132 1 729 207 103 23 chr1 9070120 9070294 -273123370 + MER5A DNA MER1_type 2 189 0 2457 56 0 10 chr1 9070394 9070699 -273122965 + AluY SINE Alu 1 302 -9 2195 159 24 58 chr1 9070955 9071407 -273122257 + L1MB5 LINE L1 5738 6174 0 2379 74 3 0 chr1 9072480 9072779 -273120885 + AluSp SINE Alu 1 300 -13 247 250 25 25 chr1 9073027 9073107 -273120557 - L2 LINE L2 -79 3234 3155 256 276 0 40 chr1 9074380 9074456 -273119208 + MER5A DNA MER1_type 42 114 -75 2293 95 7 0 chr1 9077956 9078262 -273115402 + AluSp SINE Alu 1 308 -5 1760 149 30 27 chr1 9078654 9078955 -273114709 - AluJb SINE Alu -10 302 1 2214 117 0 0 chr1 9078964 9079262 -273114402 - AluSx SINE Alu -14 298 1 2848 158 16 60 chr1 9079341 9079961 -273113703 + L1MB3 LINE L1 5558 6150 -33 1099 82 0 0 chr1 9079961 9080096 -273113568 + AluSq/x SINE Alu 1 135 -178 2250 106 0 0 chr1 9080096 9080398 -273113266 + AluSx SINE Alu 1 302 -10 2372 92 0 0 chr1 9080851 9081156 -273112508 + AluSx SINE Alu 1 305 -7 876 125 0 22 chr1 9082278 9082414 -273111250 - FLAM_C SINE Alu 0 133 1 464 339 107 61 chr1 9082537 9082851 -273110813 + L1ME3 LINE L1 5320 5669 -493 2240 106 3 3 chr1 9082851 9083163 -273110501 + AluSq SINE Alu 1 312 -1 464 339 107 61 chr1 9083163 9083373 -273110291 + L1ME3 LINE L1 5669 5868 -294 586 157 25 33 chr1 9083539 9083660 -273110004 + L1MB3 LINE L1 5476 5595 -588 515 170 28 19 chr1 9083666 9083772 -273109892 + L1MB3 LINE L1 6077 6183 0 2030 85 32 21 chr1 9083985 9084296 -273109368 - AluSq SINE Alu 0 314 1 1446 122 22 0 chr1 9084759 9084981 -273108683 - AluSg/x SINE Alu 0 312 86 247 218 0 36 chr1 9085147 9085202 -273108462 + (CCCA)n Simple_repeat Simple_repeat 3 55 0 626 195 86 104 chr1 9085482 9085703 -273107961 + MER20 DNA MER1_type 1 217 -2 273 356 22 37 chr1 9085836 9085971 -273107693 + MIR3 SINE MIR 35 167 -41 428 206 28 9 chr1 9086040 9086147 -273107517 - MER103 DNA DNA -41 125 17 1061 211 72 0 chr1 9086574 9086783 -273106881 + MER58A DNA MER1_type 1 224 0 302 248 23 53 chr1 9087114 9087247 -273106417 - Charlie7 DNA MER1_type -47 2565 2437 866 287 122 26 chr1 9088489 9088914 -273104750 + L2 LINE L2 2845 3310 -3 537 284 129 10 chr1 9092091 9092292 -273101372 + MIR SINE MIR 24 248 -14 341 267 114 8 chr1 9092740 9092871 -273100793 + MER104 DNA Tc2 33 177 -3 188 379 0 0 chr1 9092929 9092995 -273100669 + L2 LINE L2 3198 3263 -9 367 241 24 0 chr1 9094212 9094295 -273099369 + L2 LINE L2 3224 3308 -5 218 57 0 75 chr1 9095040 9095093 -273098571 + (GGA)n Simple_repeat Simple_repeat 1 49 0 1894 108 46 29 chr1 9095268 9095574 -273098090 - AluSx SINE Alu -1 311 1 255 328 115 16 chr1 9095618 9095740 -273097924 + L2 LINE L2 3096 3229 -43 359 252 165 8 chr1 9095841 9095968 -273097696 - MIR SINE MIR -75 187 41 21 0 0 0 chr1 9096625 9096646 -273097018 + AT_rich Low_complexity Low_complexity 1 21 0 1420 170 50 47 chr1 9096699 9096999 -273096665 + AluJb SINE Alu 1 301 -11 251 273 22 65 chr1 9097157 9097296 -273096368 + L2 LINE L2 2935 3067 -205 273 276 95 0 chr1 9097568 9097673 -273095991 - MIR SINE MIR -103 159 45 239 234 0 0 chr1 9098056 9098103 -273095561 + (CA)n Simple_repeat Simple_repeat 2 48 0 234 0 0 0 chr1 9098589 9098615 -273095049 + (TTTTG)n Simple_repeat Simple_repeat 2 27 0 266 376 42 30 chr1 9098967 9099132 -273094532 + MIR SINE MIR 96 262 0 2268 113 0 0 chr1 9100278 9100588 -273093076 - AluSx SINE Alu -2 310 1 205 269 0 0 chr1 9100660 9100712 -273092952 - L2 LINE L2 0 3272 3221 646 251 58 72 chr1 9100978 9101043 -273092621 + MIR SINE MIR 32 96 -166 240 35 0 0 chr1 9101043 9101072 -273092592 + (TTTTA)n Simple_repeat Simple_repeat 5 33 0 646 251 58 72 chr1 9101072 9101085 -273092579 + MIR SINE MIR 96 108 -154 2047 93 0 11 chr1 9101085 9101365 -273092299 - AluSq SINE Alu -34 279 3 646 251 58 72 chr1 9101365 9101508 -273092156 + MIR SINE MIR 108 251 -11 21 36 0 0 chr1 9101715 9101743 -273091921 + AT_rich Low_complexity Low_complexity 1 28 0 279 349 23 16 chr1 9101946 9102075 -273091589 + L1MB8 LINE L1 6049 6178 0 1331 122 19 158 chr1 9102155 9102466 -273091198 + AluJo SINE Alu 1 268 -44 255 198 55 44 chr1 9103005 9103096 -273090568 + L1MC5 LINE L1 7835 7926 -35 21 0 0 0 chr1 9103300 9103321 -273090343 + AT_rich Low_complexity Low_complexity 1 21 0 2030 135 0 10 chr1 9103767 9104071 -273089593 - AluJb SINE Alu -11 301 1 2057 128 3 0 chr1 9104633 9104921 -273088743 - AluSx SINE Alu -23 289 1 1261 155 0 5 chr1 9104949 9105143 -273088521 + AluJo SINE Alu 87 279 -33 300 27 0 0 chr1 9105143 9105180 -273088484 + (CA)n Simple_repeat Simple_repeat 1 37 0 * 303 49 0 0 chr1 9105179 9105220 -273088444 + (TC)n Simple_repeat Simple_repeat 1 41 0 331 325 97 0 chr1 9105755 9105869 -273087795 + MIR SINE MIR 125 249 -13 1625 195 24 0 chr1 9106964 9107251 -273086413 + L1MB5 LINE L1 5881 6174 0 2221 128 0 0 chr1 9107254 9107566 -273086098 + AluSx SINE Alu 1 312 0 467 262 152 42 chr1 9107807 9107998 -273085666 + MIR SINE MIR 11 222 -40 290 287 215 15 chr1 9108559 9108754 -273084910 + L2 LINE L2 3039 3272 0 214 281 132 83 chr1 9108964 9109085 -273084579 - L2 LINE L2 0 3272 3146 1112 150 75 0 chr1 9109526 9109713 -273083951 + AluJo SINE Alu 5 205 -107 2135 166 55 36 chr1 9110033 9110504 -273083160 - MLT2B3 LTR ERVL 0 554 75 827 161 97 51 chr1 9110604 9110664 -273083000 - Ricksha DNA DNA -1634 412 343 6180 158 20 15 chr1 9110664 9111831 -273081833 - ERVL-B3 LTR ERVL 0 5764 4593 1110 182 120 8 chr1 9111831 9112089 -273081575 - MLT2B3 LTR ERVL -193 361 75 822 124 11 68 chr1 9112188 9112365 -273081299 - Ricksha DNA DNA -2833 413 247 13238 159 54 33 chr1 9112390 9112969 -273080695 - ERVL-B3 LTR ERVL -1177 4587 4022 1812 121 39 39 chr1 9112969 9113274 -273080390 - AluJo SINE Alu -7 305 1 13238 159 54 33 chr1 9113274 9114499 -273079165 - ERVL-B3 LTR ERVL -1742 4022 2825 1736 153 0 59 chr1 9114499 9114705 -273078959 - AluJo SINE Alu -11 301 84 2105 104 3 3 chr1 9114705 9114992 -273078672 + AluSq SINE Alu 3 289 -24 189 0 0 0 chr1 9114992 9115013 -273078651 + (GA)n Simple_repeat Simple_repeat 2 22 0 796 122 0 0 chr1 9115017 9115124 -273078540 - FLAM_C SINE Alu -35 108 2 13238 159 54 33 chr1 9115125 9116006 -273077658 - ERVL-B3 LTR ERVL -2939 2825 1964 744 94 0 0 chr1 9116006 9116112 -273077552 + (TTCA)n Simple_repeat Simple_repeat 4 109 0 13238 159 54 33 chr1 9116112 9117014 -273076650 - ERVL-B3 LTR ERVL -3800 1964 959 243 188 0 0 chr1 9117842 9117890 -273075774 + (TG)n Simple_repeat Simple_repeat 2 49 0 205 315 0 0 chr1 9117908 9117962 -273075702 + (TG)n Simple_repeat Simple_repeat 1 54 0 331 329 153 0 chr1 9118113 9118283 -273075381 + MIR SINE MIR 28 223 -39 369 102 0 0 chr1 9119231 9119290 -273074374 + (CA)n Simple_repeat Simple_repeat 1 59 0 369 230 0 0 chr1 9120099 9120277 -273073387 + (CA)n Simple_repeat Simple_repeat 1 178 0 438 176 0 0 chr1 9120334 9120453 -273073211 + (CA)n Simple_repeat Simple_repeat 2 120 0 273 259 0 0 chr1 9120480 9120627 -273073037 + (CA)n Simple_repeat Simple_repeat 2 148 0 22 56 0 0 chr1 9120842 9120878 -273072786 + GC_rich Low_complexity Low_complexity 1 36 0 21 57 0 0 chr1 9120924 9120959 -273072705 + GC_rich Low_complexity Low_complexity 1 35 0 21 107 0 0 chr1 9121098 9121182 -273072482 + GC_rich Low_complexity Low_complexity 1 84 0 226 281 16 16 chr1 9121234 9121362 -273072302 + C-rich Low_complexity Low_complexity 4 131 0 21 71 0 0 chr1 9121394 9121436 -273072228 + GC_rich Low_complexity Low_complexity 1 42 0 25 0 0 0 chr1 9121459 9121484 -273072180 + GC_rich Low_complexity Low_complexity 1 25 0 30 0 0 0 chr1 9121504 9121534 -273072130 + GC_rich Low_complexity Low_complexity 1 30 0 240 35 0 0 chr1 9121656 9121685 -273071979 + (CCCCG)n Simple_repeat Simple_repeat 1 29 0 34 0 0 0 chr1 9121723 9121757 -273071907 + GC_rich Low_complexity Low_complexity 1 34 0 971 187 0 65 chr1 9122760 9122990 -273070674 + AluJo SINE Alu 1 215 -97 2362 74 3 3 chr1 9122997 9123308 -273070356 + AluY SINE Alu 1 311 0 1552 120 0 4 chr1 9123307 9123532 -273070132 + AluSc SINE Alu 74 297 -12 * 430 210 0 0 chr1 9124665 9124746 -273068918 + MIR SINE MIR 60 140 -122 783 178 0 0 chr1 9125053 9125171 -273068493 - AluJb SINE Alu -194 118 1 29 28 0 0 chr1 9125611 9125647 -273068017 + AT_rich Low_complexity Low_complexity 1 36 0 250 319 119 38 chr1 9125714 9125899 -273067765 - L2 LINE L2 0 3313 3114 228 281 0 0 chr1 9126208 9126265 -273067399 - L2 LINE L2 -2 3270 3214 2014 133 0 3 chr1 9126389 9126683 -273066981 - AluSx SINE Alu -19 293 1 646 295 72 0 chr1 9126861 9127054 -273066610 - MIR SINE MIR -6 256 50 1324 181 116 18 chr1 9127448 9127785 -273065879 + MLT1C LTR MaLR 6 375 -92 314 311 196 5 chr1 9127796 9128005 -273065659 + L2 LINE L2 2589 2837 -477 480 242 109 0 chr1 9128177 9128305 -273065359 - MLT1H LTR MaLR 0 549 408 1617 83 41 0 chr1 9129275 9129493 -273064171 + AluSg SINE Alu 1 227 -83 586 257 140 23 chr1 9129493 9129800 -273063864 + HAL1 LINE L1 1874 2216 -291 896 186 54 15 chr1 9129839 9130043 -273063621 - MIR SINE MIR 0 262 51 450 231 42 88 chr1 9130043 9130259 -273063405 + HAL1 LINE L1 2280 2485 -22 1753 147 65 73 chr1 9130259 9130627 -273063037 - MLT1A1 LTR MaLR 0 365 1 1296 171 121 14 chr1 9131191 9131471 -273062193 - AluJb SINE Alu -2 310 1 515 186 0 17 chr1 9131916 9132034 -273061630 + GA-rich Low_complexity Low_complexity 1 116 0 295 276 29 9 chr1 9132682 9132787 -273060877 - MIR3 SINE MIR -21 187 81 349 335 67 11 chr1 9132898 9133077 -273060587 + L2 LINE L2 3071 3259 -13 323 250 113 8 chr1 9133483 9133607 -273060057 - MIR SINE MIR -110 152 16 262 173 12 12 chr1 9134033 9134114 -273059550 + G-rich Low_complexity Low_complexity 3 83 0 180 0 0 0 chr1 9134204 9134224 -273059440 + (TGAA)n Simple_repeat Simple_repeat 1 20 0 375 119 0 0 chr1 9134643 9134710 -273058954 + (TC)n Simple_repeat Simple_repeat 1 67 0 907 199 21 16 chr1 9135931 9136117 -273057547 - MER53 DNA DNA 0 189 3 452 243 6 105 chr1 9136141 9136322 -273057342 + MLT1K LTR MaLR 426 588 0 2136 123 32 59 chr1 9136406 9136729 -273056935 + THE1B LTR MaLR 1 315 -49 1944 107 3 31 chr1 9136729 9136865 -273056799 + AluSx SINE Alu 1 139 -177 2264 73 3 10 chr1 9136865 9137165 -273056499 + AluY SINE Alu 1 298 -13 1944 107 3 31 chr1 9137165 9137352 -273056312 + AluSx SINE Alu 139 316 0 2136 123 32 59 chr1 9137352 9137401 -273056263 + THE1B LTR MaLR 315 364 0 34 55 0 0 chr1 9137709 9137764 -273055900 + AT_rich Low_complexity Low_complexity 1 55 0 2266 94 0 3 chr1 9137800 9138098 -273055566 - AluSx SINE Alu -15 297 1 249 264 81 0 chr1 9138649 9138736 -273054928 + MIR SINE MIR 52 147 -61 248 252 75 100 chr1 9139434 9139467 -273054197 + HAL1b LINE L1 794 826 -522 2032 122 10 19 chr1 9139467 9139779 -273053885 + AluSx SINE Alu 1 309 -3 248 252 75 100 chr1 9139779 9139935 -273053729 + HAL1b LINE L1 826 984 -364 2123 106 0 3 chr1 9139935 9140228 -273053436 - AluSx SINE Alu -20 292 1 248 252 75 100 chr1 9140228 9140438 -273053226 + HAL1b LINE L1 984 1184 -164 25 31 0 0 chr1 9140598 9140630 -273053034 + AT_rich Low_complexity Low_complexity 1 32 0 180 383 148 9 chr1 9141280 9141395 -273052269 - L2 LINE L2 0 3272 3142 380 298 8 0 chr1 9142073 9142197 -273051467 - MLT1K LTR MaLR -316 272 148 2242 70 28 0 chr1 9143248 9143534 -273050130 + AluSx SINE Alu 1 294 -18 1809 163 14 0 chr1 9146215 9146510 -273047154 - AluJo SINE Alu -2 310 12 296 319 113 11 chr1 9146518 9146703 -273046961 - MER112 DNA MER1_type -54 206 3 2025 108 17 0 chr1 9147362 9147657 -273046007 + AluSx SINE Alu 1 300 -12 898 115 0 0 chr1 9148688 9148810 -273044854 + FLAM_C SINE Alu 1 122 -21 218 286 60 65 chr1 9149114 9149282 -273044382 + L2 LINE L2 2924 3090 -182 327 256 144 24 chr1 9151547 9151672 -273041992 + MIR SINE MIR 107 246 -16 284 200 122 11 chr1 9152831 9152921 -273040743 + MIR SINE MIR 67 166 -96 361 327 168 13 chr1 9153049 9153669 -273039995 - L2 LINE L2 -296 3017 2288 396 181 44 72 chr1 9153734 9154149 -273039515 + (CAA)n Simple_repeat Simple_repeat 1 403 0 304 225 33 71 chr1 9154180 9154362 -273039302 + (CAA)n Simple_repeat Simple_repeat 2 176 0 387 185 52 58 chr1 9154391 9154564 -273039100 + (CAA)n Simple_repeat Simple_repeat 2 173 0 331 163 42 105 chr1 9154596 9154786 -273038878 + (CAA)n Simple_repeat Simple_repeat 2 179 0 225 211 38 53 chr1 9154916 9155049 -273038615 + (CATAA)n Simple_repeat Simple_repeat 2 132 0 2331 69 13 3 chr1 9155194 9155498 -273038166 + AluY SINE Alu 1 307 -4 215 160 60 20 chr1 9155576 9155676 -273037988 + (CAA)n Simple_repeat Simple_repeat 2 105 0 275 211 50 67 chr1 9155693 9155873 -273037791 + (CAA)n Simple_repeat Simple_repeat 2 178 0 232 256 45 51 chr1 9155948 9156124 -273037540 + (CAA)n Simple_repeat Simple_repeat 2 176 0 292 213 20 80 chr1 9156197 9156347 -273037317 + (CAA)n Simple_repeat Simple_repeat 2 142 0 181 200 25 0 chr1 9156716 9156756 -273036908 + L2 LINE L2 2980 3020 -252 264 280 87 29 chr1 9157010 9157045 -273036619 + L1MEd LINE L1 843 875 -5244 1592 140 55 49 chr1 9157045 9157352 -273036312 + AluJb SINE Alu 1 309 -3 264 280 87 29 chr1 9157352 9157523 -273036141 + L1MEd LINE L1 875 1061 -5058 614 288 19 28 chr1 9158298 9158513 -273035151 - MIR SINE MIR -38 224 12 240 299 0 58 chr1 9158741 9158828 -273034836 - Charlie8 DNA MER1_type -2209 208 127 1931 151 0 0 chr1 9158900 9159217 -273034447 + AluJo SINE Alu 1 317 0 2528 207 48 11 chr1 9159227 9159796 -273033868 + L1MB8 LINE L1 5589 6178 0 531 304 86 45 chr1 9160033 9160082 -273033582 + MIR SINE MIR 4 50 -212 1947 122 11 0 chr1 9160082 9160408 -273033256 - AluSx SINE Alu 0 329 1 531 304 86 45 chr1 9160408 9160599 -273033065 + MIR SINE MIR 50 256 -6 511 268 73 0 chr1 9160849 9161013 -273032651 - MER104 DNA MER2_type -4 176 1 604 167 48 8 chr1 9161785 9161911 -273031753 + L1MB7 LINE L1 6035 6165 -19 630 180 50 29 chr1 9161948 9162087 -273031577 + FLAM_A SINE Alu 1 142 0 224 292 0 14 chr1 9162419 9162491 -273031173 - MIR SINE MIR -62 200 130 339 25 0 0 chr1 9163008 9163048 -273030616 + (CAA)n Simple_repeat Simple_repeat 2 41 0 334 219 0 79 chr1 9163945 9164123 -273029541 + (GGGTG)n Simple_repeat Simple_repeat 5 168 0 756 163 23 0 chr1 9165834 9165963 -273027701 - FLAM_A SINE Alu -1 132 1 228 340 10 10 chr1 9166127 9166230 -273027434 + GA-rich Low_complexity Low_complexity 2 104 0 2112 95 7 3 chr1 9168238 9168532 -273025132 + AluSx SINE Alu 1 295 -17 850 258 68 0 chr1 9170074 9170295 -273023369 + MIR SINE MIR 5 240 -22 259 271 90 71 chr1 9170350 9170505 -273023159 - MIR SINE MIR -48 214 57 207 206 0 73 chr1 9172153 9172221 -273021443 + MER5B DNA MER1_type 1 63 -115 184 311 40 0 chr1 9172384 9172458 -273021206 - MER5A DNA MER1_type -78 111 35 326 319 135 12 chr1 9172495 9172658 -273021006 - MIR SINE MIR 0 262 80 1798 122 29 11 chr1 9172782 9173093 -273020571 + AluJb SINE Alu 1 316 0 476 331 6 29 chr1 9173840 9174015 -273019649 + MIR3 SINE MIR 7 177 -31 1920 138 0 0 chr1 9175156 9175447 -273018217 + AluSx SINE Alu 22 312 0 620 194 12 43 chr1 9175447 9175693 -273017971 - MER63 DNA MER1_type -147 915 1 1539 221 192 32 chr1 9175702 9176641 -273017023 + L2 LINE L2 2234 3313 0 689 221 32 100 chr1 9176773 9176949 -273016715 - MIR SINE MIR 0 262 106 2054 117 40 0 chr1 9176949 9177249 -273016415 + AluSx SINE Alu 1 312 0 689 221 32 100 chr1 9177249 9177321 -273016343 - MIR SINE MIR -156 106 31 463 244 306 0 chr1 9177631 9177791 -273015873 + MIR SINE MIR 48 256 -6 1908 110 16 39 chr1 9177793 9178102 -273015562 - AluSx SINE Alu -10 302 1 1834 102 8 8 chr1 9178192 9178457 -273015207 + AluSx SINE Alu 1 265 -47 1689 164 0 4 chr1 9178572 9178852 -273014812 + AluJb SINE Alu 3 281 -31 26 64 0 0 chr1 9178866 9178913 -273014751 + AT_rich Low_complexity Low_complexity 1 47 0 44 70 0 0 chr1 9179325 9179411 -273014253 + GC_rich Low_complexity Low_complexity 1 86 0 30 58 0 14 chr1 9179708 9179732 -273013932 + GC_rich Low_complexity Low_complexity 1 24 -44 208 24 24 71 chr1 9179732 9179774 -273013890 + (CGGGGG)n Simple_repeat Simple_repeat 5 44 0 30 58 0 14 chr1 9179774 9179818 -273013846 + GC_rich Low_complexity Low_complexity 24 68 0 316 265 191 25 chr1 9180152 9180314 -273013350 + MIR SINE MIR 65 253 -9 1999 113 0 0 chr1 9180478 9180790 -273012874 - AluJb SINE Alu 0 340 29 1905 121 13 26 chr1 9181388 9181693 -273011971 + AluSx SINE Alu 1 301 -11 2391 77 3 0 chr1 9181693 9182003 -273011661 + AluSp SINE Alu 1 312 -1 234 170 22 0 chr1 9182657 9182706 -273010958 - MIR SINE MIR -68 140 95 1684 151 3 43 chr1 9182894 9183193 -273010471 - AluJo SINE Alu -13 299 13 813 147 74 165 chr1 9183253 9183633 -273010031 - MLT1E2 LTR MaLR 0 505 191 2494 65 0 0 chr1 9183633 9183943 -273009721 - AluY SINE Alu -1 310 1 813 147 74 165 chr1 9183943 9183970 -273009694 - MLT1E2 LTR MaLR -314 191 163 1908 106 0 0 chr1 9183970 9184225 -273009439 + AluSq SINE Alu 1 255 -58 826 137 0 0 chr1 9184225 9184349 -273009315 + AluSg/x SINE Alu 169 292 -18 524 202 54 8 chr1 9184351 9184480 -273009184 - MLT1E2 LTR MaLR -456 170 36 1296 192 112 0 chr1 9184484 9184760 -273008904 - AluJo SINE Alu 0 312 6 2037 127 0 7 chr1 9184769 9185068 -273008596 - AluSx SINE Alu -13 299 3 2126 92 14 3 chr1 9185164 9185459 -273008205 - AluSx SINE Alu -14 298 1 4055 165 15 82 chr1 9185464 9185847 -273007817 - L1MB8 LINE L1 0 6178 5771 1956 141 17 0 chr1 9185847 9186146 -273007518 - AluSx SINE Alu -8 304 1 4055 165 15 82 chr1 9186146 9186361 -273007303 - L1MB8 LINE L1 -407 5771 5543 1914 127 7 23 chr1 9186361 9186660 -273007004 - AluSx SINE Alu -18 294 1 4055 165 15 82 chr1 9186660 9186803 -273006861 - L1MB8 LINE L1 -635 5543 5392 2361 78 3 7 chr1 9186803 9187111 -273006553 - AluSx SINE Alu -5 307 1 4055 165 15 82 chr1 9187111 9187272 -273006392 - L1MB8 LINE L1 -786 5392 5222 1630 162 0 45 chr1 9187272 9187586 -273006078 - AluJb SINE Alu -12 300 1 4055 165 15 82 chr1 9187586 9187818 -273005846 - L1MB8 LINE L1 -956 5222 5156 2119 125 0 0 chr1 9187818 9188114 -273005550 - AluSq SINE Alu -17 296 1 4055 165 15 82 chr1 9188114 9188337 -273005327 - L1MB8 LINE L1 -1022 5156 4920 236 224 0 0 chr1 9188459 9188508 -273005156 + L2 LINE L2 3221 3269 -3 841 288 105 30 chr1 9189281 9189854 -273003810 - L2 LINE L2 -19 3294 2677 2117 128 0 0 chr1 9189960 9190265 -273003399 + AluSx SINE Alu 1 305 -7 475 176 19 37 chr1 9190266 9190374 -273003290 - MER74A LTR ERVL -10 548 443 2286 94 0 3 chr1 9190376 9190868 -273002796 + AluSc SINE Alu 1 309 0 1064 103 0 22 chr1 9190672 9191215 -273002449 + (GAA)n Simple_repeat Simple_repeat 1 539 0 1783 201 45 21 chr1 9191215 9191639 -273002025 - MER74A LTR ERVL -99 459 26 193 333 0 0 chr1 9191697 9191760 -273001904 - L2 LINE L2 -798 2516 2454 1833 125 71 14 chr1 9191762 9191898 -273001766 + AluSx SINE Alu 1 128 -184 1893 143 3 10 chr1 9191898 9192192 -273001472 + AluSc SINE Alu 1 292 -17 1833 125 71 14 chr1 9192192 9192350 -273001314 + AluSx SINE Alu 128 312 0 2135 95 0 20 chr1 9192900 9193196 -273000468 - AluSx SINE Alu 0 312 23 1870 143 13 23 chr1 9193269 9193577 -273000087 - AluJb SINE Alu -7 305 1 914 142 0 8 chr1 9194138 9194272 -272999392 - FLAM_C SINE Alu 0 133 1 3888 165 46 23 chr1 9194447 9194885 -272998779 + L1MB4 LINE L1 5173 5599 -581 1994 89 55 28 chr1 9194885 9195176 -272998488 + AluSx SINE Alu 1 299 -13 3888 165 46 23 chr1 9195176 9195640 -272998024 + L1MB4 LINE L1 5599 6096 -84 892 151 0 7 chr1 9195652 9195798 -272997866 + AluJb SINE Alu 1 145 -167 2477 62 0 0 chr1 9195799 9196104 -272997560 + AluY SINE Alu 1 305 -6 1688 108 88 0 chr1 9196527 9196798 -272996866 + AluJb SINE Alu 12 304 0 1912 120 68 0 chr1 9196812 9197104 -272996560 + AluSx SINE Alu 1 312 0 2155 117 3 0 chr1 9197648 9197957 -272995707 + AluSx SINE Alu 1 310 -2 2025 84 3 34 chr1 9198232 9198553 -272995111 - AluSx SINE Alu 0 312 1 2017 122 24 0 chr1 9198553 9198847 -272994817 - AluSx SINE Alu -11 301 1 2060 143 7 0 chr1 9199370 9199678 -272993986 - AluSg SINE Alu 0 310 1 1888 143 0 10 chr1 9199678 9199972 -272993692 - AluJb SINE Alu -21 291 1 208 283 0 0 chr1 9200588 9200641 -272993023 + L2 LINE L2 3189 3241 -31 1479 178 52 0 chr1 9200956 9201226 -272992438 + AluJb SINE Alu 7 290 -22 1220 284 28 54 chr1 9201278 9201739 -272991925 + MLT1J LTR MaLR 14 462 -49 586 184 65 30 chr1 9201991 9202011 -272991653 - MER53 DNA DNA -15 174 156 2380 92 0 0 chr1 9202011 9202314 -272991350 - AluSx SINE Alu -9 303 1 586 184 65 30 chr1 9202314 9202461 -272991203 - MER53 DNA DNA -33 156 1 492 274 62 44 chr1 9202718 9202965 -272990699 + MIR SINE MIR 1 250 -12 249 33 0 0 chr1 9203177 9203207 -272990457 + (TTCC)n Simple_repeat Simple_repeat 4 33 0 329 102 20 0 chr1 9203226 9203275 -272990389 + MLT1B LTR MaLR 1 50 -340 2023 169 19 3 chr1 9203336 9203696 -272989968 + MLT1B LTR MaLR 25 390 0 207 313 27 68 chr1 9203741 9203855 -272989809 - L2 LINE L2 0 3272 3164 1805 157 0 41 chr1 9203855 9204031 -272989633 - AluJo SINE Alu -6 306 147 2223 89 3 7 chr1 9204031 9204333 -272989331 - AluSp SINE Alu -12 301 1 1805 157 0 41 chr1 9204333 9204475 -272989189 - AluJo SINE Alu -165 147 1 207 313 27 68 chr1 9204475 9204507 -272989157 - L2 LINE L2 -108 3164 3132 1788 169 3 0 chr1 9205006 9205307 -272988357 + AluSx SINE Alu 1 302 -10 279 292 67 46 chr1 9205399 9205594 -272988070 - L2 LINE L2 -1 3312 3114 2162 100 17 0 chr1 9205605 9205906 -272987758 - AluSp SINE Alu -6 307 2 1989 113 38 3 chr1 9205952 9206245 -272987419 + AluSx SINE Alu 1 303 -9 184 326 0 0 chr1 9206717 9206766 -272986898 + L2 LINE L2 3265 3313 0 2298 88 3 0 chr1 9207398 9207695 -272985969 + AluSp SINE Alu 9 306 -7 844 145 0 8 chr1 9208280 9208411 -272985253 - FLAM_C SINE Alu 0 133 4 636 182 179 23 chr1 9208661 9208851 -272984813 + MIR SINE MIR 1 206 -56 2320 79 7 0 chr1 9208882 9209186 -272984478 + AluSp SINE Alu 1 306 -7 2383 60 0 3 chr1 9209271 9209572 -272984092 + AluY SINE Alu 1 300 -11 1707 197 92 15 chr1 9209653 9210080 -272983584 + MLT1C LTR MaLR 1 467 0 223 212 153 0 chr1 9210231 9210316 -272983348 - MIR3 SINE MIR -45 163 66 400 368 0 28 chr1 9210368 9210550 -272983114 + MIR3 SINE MIR 30 206 -2 252 0 0 0 chr1 9210915 9210943 -272982721 + (CA)n Simple_repeat Simple_repeat 2 29 0 187 31 62 0 chr1 9211542 9211574 -272982090 + T-rich Low_complexity Low_complexity 2 35 0 210 150 0 0 chr1 9212608 9212648 -272981016 + (CAG)n Simple_repeat Simple_repeat 3 42 0 436 72 29 0 chr1 9212660 9212729 -272980935 + (GGA)n Simple_repeat Simple_repeat 1 71 0 197 65 32 0 chr1 9215532 9215563 -272978101 + (CCCG)n Simple_repeat Simple_repeat 1 32 0 200 216 0 20 chr1 9216770 9216821 -272976843 + GA-rich Low_complexity Low_complexity 2 51 0 452 240 40 0 chr1 9217366 9217491 -272976173 - MIR3 SINE MIR -21 187 58 1714 141 0 4 chr1 9218899 9219161 -272974503 - AluJb SINE Alu -18 294 34 1974 139 13 3 chr1 9219186 9219528 -272974136 - AluSx SINE Alu 0 345 1 820 169 0 0 chr1 9219619 9219749 -272973915 + FLAM_C SINE Alu 3 132 -1 817 183 15 0 chr1 9219822 9219959 -272973705 + FLAM_C SINE Alu 2 140 -3 1394 164 30 69 chr1 9220253 9220558 -272973106 + AluJb SINE Alu 1 293 -19 446 33 0 16 chr1 9220558 9220619 -272973045 + (TCTA)n Simple_repeat Simple_repeat 3 62 0 2211 95 6 13 chr1 9221984 9222299 -272971365 - AluSq SINE Alu 0 313 1 1250 157 14 9 chr1 9223041 9223258 -272970406 - LTR26E LTR ERV1 -8 614 397 722 282 177 26 chr1 9223336 9223715 -272969949 - L2 LINE L2 -15 3298 2863 2411 246 46 43 chr1 9223722 9223817 -272969847 - L2 LINE L2 -625 2689 2596 1363 171 57 67 chr1 9223817 9224116 -272969548 + AluJb SINE Alu 1 296 -16 2411 246 46 43 chr1 9224116 9224825 -272968839 - L2 LINE L2 -718 2596 1883 2197 113 0 7 chr1 9225102 9225411 -272968253 - AluSx SINE Alu -5 307 1 421 163 325 0 chr1 9225902 9226025 -272967639 + MER3 DNA MER1_type 41 203 -6 2114 115 0 19 chr1 9226160 9226474 -272967190 + AluSx SINE Alu 1 308 -4 1009 133 66 0 chr1 9226474 9226640 -272967024 + AluSg/x SINE Alu 132 308 -2 421 280 65 60 chr1 9226892 9227101 -272966563 + MIR SINE MIR 34 246 -16 653 171 8 0 chr1 9227919 9228042 -272965622 - L1MB7 LINE L1 -16 6168 6045 28 29 0 0 chr1 9228043 9228078 -272965586 + AT_rich Low_complexity Low_complexity 1 35 0 1344 150 5 0 chr1 9228084 9228297 -272965367 - AluJo SINE Alu -24 288 75 2076 104 21 0 chr1 9228480 9228769 -272964895 + AluSx SINE Alu 1 295 -17 257 0 0 29 chr1 9229546 9229580 -272964084 + (TTCA)n Simple_repeat Simple_repeat 2 34 0 276 272 93 25 chr1 9229679 9229872 -272963792 + MIR SINE MIR 2 197 -31 1941 108 29 55 chr1 9229975 9230282 -272963382 + AluSq SINE Alu 1 299 -14 21 0 0 0 chr1 9231504 9231525 -272962139 + GC_rich Low_complexity Low_complexity 1 21 0 224 209 0 0 chr1 9234050 9234093 -272959571 - L2 LINE L2 0 3272 3230 297 280 118 0 chr1 9234128 9234221 -272959443 - L2 LINE L2 -338 2975 2872 297 322 68 1 chr1 9234493 9234639 -272959025 + MIR SINE MIR 18 169 -67 2069 142 0 0 chr1 9234867 9235176 -272958488 - AluJo SINE Alu -3 309 1 2170 92 7 13 chr1 9236005 9236310 -272957354 + AluSx SINE Alu 1 303 -9 531 287 51 19 chr1 9236529 9236645 -272957019 - MER2 DNA MER2_type 0 345 234 774 167 8 0 chr1 9236645 9236777 -272956887 + FLAM_C SINE Alu 1 133 0 531 287 51 19 chr1 9236777 9236876 -272956788 - MER2 DNA MER2_type -111 234 123 2122 99 3 0 chr1 9236877 9237171 -272956493 + AluSq SINE Alu 1 295 -18 763 143 84 0 chr1 9237173 9237292 -272956372 + AluSg/x SINE Alu 143 271 -39 628 198 25 0 chr1 9237299 9237420 -272956244 - MER2 DNA MER2_type -220 125 2 1393 118 22 18 chr1 9237939 9238168 -272955496 - AluJb SINE Alu -1 311 82 2120 130 0 0 chr1 9238269 9238569 -272955095 + AluSx SINE Alu 1 300 -12 454 183 0 24 chr1 9238569 9238645 -272955019 - FLAM_A SINE Alu -24 118 45 626 286 57 40 chr1 9238865 9239113 -272954551 - MIR SINE MIR -3 259 8 2826 200 43 32 chr1 9239206 9239790 -272953874 - MLT1E LTR MaLR -3 590 1 1989 132 0 0 chr1 9240659 9240970 -272952694 - AluSx SINE Alu 0 312 2 855 114 0 2 chr1 9241000 9241258 -272952406 + AluJ SINE Alu 1 304 -8 294 222 80 115 chr1 9241554 9241784 -272951880 + MLT1C LTR MaLR 99 340 -165 2121 99 20 3 chr1 9241785 9242079 -272951585 + AluSx SINE Alu 1 299 -13 1786 151 3 3 chr1 9242382 9242666 -272950998 - AluJb SINE Alu -18 294 11 284 125 0 0 chr1 9242666 9242706 -272950958 - Alu SINE Alu -262 40 1 688 219 140 79 chr1 9242805 9243194 -272950470 - MLT1C LTR MaLR -41 442 1 2184 89 3 3 chr1 9243582 9243873 -272949791 + AluSx SINE Alu 1 291 -21 2087 132 0 0 chr1 9243927 9244231 -272949433 - AluY SINE Alu -7 304 1 203 322 17 0 chr1 9244424 9244483 -272949181 - L2 LINE L2 -10 3303 3244 2207 103 3 0 chr1 9244879 9245180 -272948484 + AluSx SINE Alu 3 304 -8 895 132 0 0 chr1 9245773 9245909 -272947755 - AluJb SINE Alu -176 136 1 258 105 0 0 chr1 9245935 9245973 -272947691 + (CA)n Simple_repeat Simple_repeat 2 39 0 1735 156 30 7 chr1 9246069 9246364 -272947300 - AluJo SINE Alu -10 302 1 2210 81 7 29 chr1 9246821 9247130 -272946534 - AluSg SINE Alu -8 302 1 2158 94 13 3 chr1 9247142 9247451 -272946213 - AluSx SINE Alu 0 312 1 1480 164 0 82 chr1 9248179 9248326 -272945338 + AluJb SINE Alu 1 108 -204 2257 99 0 3 chr1 9248326 9248628 -272945036 + AluSx SINE Alu 2 302 -10 1480 164 0 82 chr1 9248628 9248810 -272944854 + AluJb SINE Alu 108 303 -9 1066 162 5 79 chr1 9249703 9249864 -272943800 - MER20 DNA MER1_type -4 215 72 2228 118 0 0 chr1 9249864 9250168 -272943496 - AluSx SINE Alu -8 304 1 1066 162 5 79 chr1 9250168 9250222 -272943442 - MER20 DNA MER1_type -147 72 16 972 90 0 0 chr1 9250928 9251061 -272942603 - AluSp SINE Alu -180 133 1 246 128 0 0 chr1 9252486 9252525 -272941139 + (T)n Simple_repeat Simple_repeat 1 39 0 638 281 50 15 chr1 9253512 9253595 -272940069 - MLT1L LTR MaLR 0 615 536 1596 170 23 13 chr1 9253595 9253720 -272939944 + AluJo SINE Alu 1 123 -189 183 42 0 0 chr1 9253720 9253744 -272939920 + (CAAAC)n Simple_repeat Simple_repeat 1 24 0 1596 170 23 13 chr1 9253744 9253918 -272939746 + AluJo SINE Alu 123 303 -9 638 281 50 15 chr1 9253918 9254033 -272939631 - MLT1L LTR MaLR -79 536 410 476 238 57 0 chr1 9254073 9254195 -272939469 - MLT1L LTR MaLR -324 291 163 259 284 12 12 chr1 9254238 9254319 -272939345 - MLT1L LTR MaLR -534 81 1 377 370 29 0 chr1 9254341 9254479 -272939185 + L1MC4 LINE L1 6567 6708 -1334 2174 101 3 3 chr1 9254500 9254796 -272938868 + AluSq SINE Alu 3 298 -15 180 77 0 0 chr1 9254913 9254939 -272938725 + (T)n Simple_repeat Simple_repeat 1 26 0 2196 99 3 10 chr1 9255465 9255778 -272937886 - AluSx SINE Alu -1 311 1 1971 115 0 17 chr1 9256019 9256347 -272937317 - AluSq SINE Alu 0 323 1 1397 179 81 4 chr1 9256349 9256622 -272937042 - AluJb SINE Alu -18 294 1 1988 147 0 6 chr1 9257801 9258115 -272935549 - AluSx SINE Alu 0 312 1 363 169 0 0 chr1 9259536 9259595 -272934069 - AluJ/FLAM SINE Alu -233 69 11 885 137 82 0 chr1 9259601 9259747 -272933917 - FRAM SINE Alu -11 165 8 265 298 46 53 chr1 9260513 9260644 -272933020 + MER5A DNA MER1_type 46 175 -14 1954 110 30 43 chr1 9260721 9261022 -272932642 - AluSx SINE Alu -15 297 1 841 170 0 0 chr1 9261435 9261576 -272932088 + FLAM_C SINE Alu 1 141 -2 1660 204 28 26 chr1 9261616 9262004 -272931660 + MLT2C1 LTR ERVL 1 389 -8 285 270 0 20 chr1 9462566 9462666 -272730998 + MLT1H LTR MaLR 368 465 -84 3503 85 4 2 chr1 9462917 9463388 -272730276 + LTR8 LTR ERV1 1 472 -219 8223 42 4 1 chr1 9463488 9464551 -272729113 - L1P LINE L1 -794 5352 4287 696 332 174 31 chr1 9465046 9465863 -272727801 + L3 LINE CR1 211 1144 -433 354 329 55 24 chr1 9466172 9466336 -272727328 - L1M LINE L1 -2385 5423 5255 335 264 127 10 chr1 9466558 9466755 -272726909 - L1M4 LINE L1 -1437 4709 4490 2028 128 0 24 chr1 9467245 9467541 -272726123 + AluSx SINE Alu 1 289 -23 253 191 191 0 chr1 9468369 9468453 -272725211 + MIR3 SINE MIR 108 207 -1 410 179 51 90 chr1 9471100 9471256 -272722408 - MER97a DNA MER1_type? -744 150 1 2230 121 52 100 chr1 9471422 9471884 -272721780 + Tigger3(Golem) DNA MER2_type 2578 3017 -12 266 203 34 0 chr1 9471894 9471953 -272721711 + LTR67 LTR ERVL 114 174 -383 1440 151 95 48 chr1 9471962 9472320 -272721344 - THE1C LTR MaLR 0 375 1 286 228 43 11 chr1 9472495 9472587 -272721077 + LTR67 LTR ERVL 439 533 -24 1694 117 117 0 chr1 9473879 9474009 -272719655 + AluSx SINE Alu 1 114 -198 1992 153 0 0 chr1 9474009 9474297 -272719367 + AluSg SINE Alu 9 296 -14 1694 117 117 0 chr1 9474297 9474415 -272719249 + AluSx SINE Alu 114 278 -34 660 195 17 0 chr1 9474419 9474593 -272719071 + GA-rich Low_complexity Low_complexity 4 180 0 273 167 0 21 chr1 9474721 9474769 -272718895 - Alu SINE Alu -253 48 2 2172 122 0 20 chr1 9474895 9475198 -272718466 - AluSx SINE Alu -15 297 1 1001 132 38 0 chr1 9475945 9476104 -272717560 - Tigger4(Zombi) DNA MER2_type -2566 165 1 2385 93 3 0 chr1 9476484 9476786 -272716878 - AluSp SINE Alu -10 303 1 2325 102 0 0 chr1 9477768 9478061 -272715603 + AluSx SINE Alu 1 293 -19 283 218 0 0 chr1 9478219 9478274 -272715390 + Tigger5 DNA MER2_type 3 57 -2266 822 168 0 0 chr1 9478341 9478466 -272715198 + FLAM_C SINE Alu 2 126 -7 2078 136 0 17 chr1 9478481 9478617 -272715047 + AluSx SINE Alu 1 138 -164 2348 94 0 16 chr1 9478617 9478754 -272714910 + AluSq SINE Alu 1 139 -174 2363 112 0 0 chr1 9478754 9479066 -272714598 + AluSq SINE Alu 1 312 -1 2348 94 0 16 chr1 9479066 9479237 -272714427 + AluSq SINE Alu 139 304 -9 2078 136 0 17 chr1 9479237 9479402 -272714262 + AluSx SINE Alu 138 297 -5 785 203 26 0 chr1 9479409 9479562 -272714102 + FRAM SINE Alu 5 161 -5 1173 208 32 70 chr1 9480037 9480350 -272713314 - AluSx SINE Alu 0 302 2 792 180 66 28 chr1 9480520 9480731 -272712933 - MER20 DNA MER1_type 0 219 1 1859 136 3 42 chr1 9480937 9481245 -272712419 + AluJb SINE Alu 1 296 -16 2463 88 0 19 chr1 9481403 9481721 -272711943 + AluSq SINE Alu 1 312 -1 257 343 59 29 chr1 9482280 9482382 -272711282 - L2 LINE L2 -42 3271 3167 2479 49 3 0 chr1 9482446 9482732 -272710932 - AluY SINE Alu -11 300 14 3317 145 35 88 chr1 9482762 9483017 -272710647 - L1MB3 LINE L1 0 6183 5916 1953 162 0 3 chr1 9483017 9483320 -272710344 + AluJb SINE Alu 1 302 -10 3317 145 35 88 chr1 9483320 9483333 -272710331 - L1MB3 LINE L1 -267 5916 5904 2123 128 17 0 chr1 9483333 9483621 -272710043 + AluSx SINE Alu 1 293 -19 2542 62 0 3 chr1 9483630 9483938 -272709726 + AluY SINE Alu 1 307 -4 3317 145 35 88 chr1 9483938 9484430 -272709234 - L1MB3 LINE L1 -287 5896 5453 348 266 66 49 chr1 9484478 9484704 -272708960 - L1MC5 LINE L1 -50 7911 7682 1964 162 3 3 chr1 9484741 9485049 -272708615 + AluJb SINE Alu 1 308 -4 225 188 47 47 chr1 9485049 9485125 -272708539 - L1MC5 LINE L1 -272 7689 7611 823 249 80 10 chr1 9485286 9485587 -272708077 - L1M4 LINE L1 -2096 4050 3729 2196 54 4 36 chr1 9485896 9486174 -272707490 + AluY SINE Alu 1 269 -42 2460 70 3 3 chr1 9486390 9486688 -272706976 - AluSp SINE Alu -15 298 1 2054 148 0 10 chr1 9487064 9487369 -272706295 - AluJb SINE Alu -10 302 1 2342 109 3 0 chr1 9487377 9487688 -272705976 - AluSx SINE Alu 0 312 1 264 266 43 53 chr1 9488216 9488310 -272705354 + MIR3 SINE MIR 4 96 -112 582 229 70 75 chr1 9488366 9488482 -272705182 + MIR SINE MIR 46 161 -101 2243 79 11 4 chr1 9488482 9488761 -272704903 + AluSq SINE Alu 1 281 -32 216 0 0 0 chr1 9488764 9488788 -272704876 + (TAA)n Simple_repeat Simple_repeat 3 26 0 582 229 70 75 chr1 9488788 9488868 -272704796 + MIR SINE MIR 163 245 -17 2499 73 0 13 chr1 9488938 9489252 -272704412 + AluY SINE Alu 1 310 -1 2331 112 6 6 chr1 9489257 9489570 -272704094 + AluSp SINE Alu 1 313 0 2164 101 7 32 chr1 9489585 9489893 -272703771 + AluSx SINE Alu 5 304 -8 251 313 94 16 chr1 9489975 9490103 -272703561 - MIR SINE MIR -46 216 79 1864 158 0 24 chr1 9490103 9490400 -272703264 + AluJo SINE Alu 1 290 -22 2199 124 0 0 chr1 9490763 9491053 -272702611 - AluSx SINE Alu -22 290 1 623 243 29 0 chr1 9491060 9491200 -272702464 - MIR SINE MIR -105 157 14 451 219 187 0 chr1 9491545 9491668 -272701996 + MIR SINE MIR 57 202 -60 2278 125 3 0 chr1 9491668 9491973 -272701691 + AluSx SINE Alu 1 306 -6 303 197 127 0 chr1 9494108 9494179 -272699485 - MIR SINE MIR -90 172 93 336 282 168 24 chr1 9495146 9495355 -272698309 + MIR SINE MIR 12 250 -12 288 304 112 50 chr1 9496311 9496344 -272697320 - MIR SINE MIR -76 186 156 2132 137 0 3 chr1 9496344 9496644 -272697020 + AluSx SINE Alu 1 299 -13 288 304 112 50 chr1 9496644 9496771 -272696893 - MIR SINE MIR -106 156 16 180 194 97 48 chr1 9497384 9497446 -272696218 + MIR SINE MIR 14 78 -184 1847 96 65 55 chr1 9497498 9497646 -272696018 + AluSx SINE Alu 1 146 -166 1825 100 0 41 chr1 9497646 9497915 -272695749 + AluSx SINE Alu 44 301 -11 1847 96 65 55 chr1 9497915 9498059 -272695605 + AluSx SINE Alu 146 296 -16 2573 59 10 0 chr1 9498075 9498378 -272695286 + AluY SINE Alu 1 306 -5 739 167 9 0 chr1 9498378 9498492 -272695172 - AluJb SINE Alu -196 116 2 746 159 61 12 chr1 9498568 9498731 -272694933 - L1MB7 LINE L1 -10 6174 6004 2280 107 0 0 chr1 9501567 9501858 -272691806 + AluSx SINE Alu 1 291 -21 525 284 98 42 chr1 9502073 9502337 -272691327 + L2 LINE L2 3035 3313 0 2201 124 3 0 chr1 9502455 9502761 -272690903 - AluSx SINE Alu -5 307 1 875 175 0 0 chr1 9502825 9502968 -272690696 + FLAM_C SINE Alu 1 143 0 192 277 0 46 chr1 9503019 9503084 -272690580 + L2 LINE L2 604 665 -2649 2658 44 0 25 chr1 9503905 9504221 -272689443 + AluY SINE Alu 1 308 -3 2450 100 0 0 chr1 9504372 9504681 -272688983 + AluSc SINE Alu 1 309 0 2063 147 0 10 chr1 9504689 9504995 -272688669 + AluJb SINE Alu 1 303 -9 2460 70 3 3 chr1 9505371 9505669 -272687995 + AluSp SINE Alu 1 298 -15 719 205 0 0 chr1 9505796 9505913 -272687751 - FLAM_C SINE Alu -25 118 2 2289 96 3 3 chr1 9506052 9506344 -272687320 + AluSp SINE Alu 1 292 -21 437 136 0 0 chr1 9506355 9506421 -272687243 + Alu SINE Alu 236 301 -11 3440 143 23 54 chr1 9506457 9507054 -272686610 - L1MB7 LINE L1 0 6184 5609 2245 103 3 0 chr1 9507054 9507344 -272686320 - AluSx SINE Alu -21 291 1 3440 143 23 54 chr1 9507344 9507411 -272686253 - L1MB7 LINE L1 -575 5609 5541 1769 165 38 3 chr1 9508078 9508369 -272685295 - AluJo SINE Alu -11 301 1 1548 187 0 15 chr1 9508607 9508869 -272684795 - AluJb SINE Alu -54 258 1 2347 92 0 10 chr1 9508874 9509179 -272684485 - AluY SINE Alu -9 302 1 421 147 27 0 chr1 9509388 9509463 -272684201 - MER45A DNA AcHobo 0 178 102 2020 161 0 3 chr1 9509470 9509781 -272683883 - AluSx SINE Alu -2 310 1 2142 124 3 3 chr1 9509815 9510114 -272683550 - AluSx SINE Alu -13 299 1 2405 91 3 7 chr1 9510123 9510432 -272683232 - AluSp SINE Alu -5 308 1 2256 119 0 0 chr1 9510839 9511141 -272682523 - AluY SINE Alu -9 302 1 230 26 26 26 chr1 9512176 9512215 -272681449 + (TTTA)n Simple_repeat Simple_repeat 2 180 0 2168 110 0 0 chr1 9512215 9512488 -272681176 - AluSx SINE Alu -24 288 13 2124 118 3 0 chr1 9512500 9512788 -272680876 - AluSx SINE Alu -13 299 11 222 37 0 0 chr1 9512792 9512819 -272680845 + (CCTG)n Simple_repeat Simple_repeat 2 28 0 1305 123 29 84 chr1 9513116 9513295 -272680369 + MLT1B LTR MaLR 4 211 -256 2488 77 3 0 chr1 9513295 9513594 -272680070 + AluY SINE Alu 2 301 -10 1305 123 29 84 chr1 9513594 9513725 -272679939 + MLT1B LTR MaLR 211 348 -119 649 142 11 40 chr1 9513794 9513970 -272679694 + GA-rich Low_complexity Low_complexity 2 172 0 2123 135 0 19 chr1 9513977 9514295 -272679369 + AluSx SINE Alu 1 312 0 2482 77 0 6 chr1 9514300 9514613 -272679051 + AluY SINE Alu 1 311 0 346 129 65 0 chr1 9514638 9514700 -272678964 - AluJo SINE Alu 0 302 237 932 181 139 0 chr1 9514701 9514867 -272678797 - AluJo SINE Alu -123 189 1 698 175 0 0 chr1 9514869 9514983 -272678681 + MLT1B LTR MaLR 275 388 -2 286 270 191 15 chr1 9515398 9515434 -272678230 - MIR SINE MIR -63 145 117 2099 148 0 3 chr1 9515434 9515731 -272677933 - AluJo SINE Alu -16 296 1 286 270 191 15 chr1 9515731 9515857 -272677807 - MIR SINE MIR -91 117 14 564 103 0 41 chr1 9515909 9516006 -272677658 + AluSq SINE Alu 1 93 -219 768 266 152 36 chr1 9516577 9516777 -272676887 - L2 LINE L2 0 3313 3138 2053 109 0 4 chr1 9516777 9517044 -272676620 + AluSx SINE Alu 1 266 -46 768 266 152 36 chr1 9517044 9517290 -272676374 - L2 LINE L2 -175 3138 2815 713 213 18 7 chr1 9517539 9517817 -272675847 - MLT1I LTR MaLR -7 402 1 210 71 0 0 chr1 9519865 9519893 -272673771 + (TCC)n Simple_repeat Simple_repeat 3 30 0 306 326 123 9 chr1 9520446 9520673 -272672991 - MIR SINE MIR 0 262 10 1742 98 0 0 chr1 9520952 9521166 -272672498 + AluSq SINE Alu 88 301 -12 258 116 0 0 chr1 9521798 9521841 -272671823 + (GA)n Simple_repeat Simple_repeat 2 44 0 469 244 85 18 chr1 9522673 9522837 -272670827 + L3 LINE CR1 1337 1511 -66 261 234 0 16 chr1 9525897 9525961 -272667703 + (GGGTG)n Simple_repeat Simple_repeat 1 63 0 2342 115 0 6 chr1 9526679 9526991 -272666673 - AluSg SINE Alu 0 310 1 5374 206 83 27 chr1 9529127 9529411 -272664253 + L1M4 LINE L1 3657 3923 -2223 2313 88 27 3 chr1 9529411 9529706 -272663958 + AluSq SINE Alu 1 302 -11 5374 206 83 27 chr1 9529706 9530002 -272663662 + L1M4 LINE L1 3923 4201 -1945 2098 150 0 0 chr1 9530002 9530296 -272663368 - AluJb SINE Alu -18 294 1 5374 206 83 27 chr1 9530296 9531046 -272662618 + L1M4 LINE L1 4201 5089 -1057 1569 175 6 48 chr1 9531046 9531228 -272662436 - AluJo SINE Alu -9 303 138 1957 122 0 7 chr1 9531228 9531498 -272662166 + AluSx SINE Alu 45 312 0 1569 175 6 48 chr1 9531498 9531630 -272662034 - AluJo SINE Alu -174 138 2 5374 206 83 27 chr1 9531630 9531831 -272661833 + L1M4 LINE L1 5089 5277 -869 1424 90 0 5 chr1 9531831 9532019 -272661645 - AluSg/x SINE Alu -10 302 116 645 208 87 63 chr1 9533024 9533231 -272660433 - L2 LINE L2 0 3313 3102 2403 55 41 3 chr1 9533249 9533541 -272660123 + AluY SINE Alu 1 303 -8 2264 97 0 0 chr1 9533552 9533831 -272659833 + AluSg SINE Alu 1 279 -31 880 266 38 26 chr1 9533860 9534127 -272659537 - L2 LINE L2 -495 2819 2550 2279 106 0 3 chr1 9534436 9534739 -272658925 + AluSx SINE Alu 1 302 -10 206 318 45 0 chr1 9534792 9534858 -272658806 - MIR3 SINE MIR -11 197 129 227 385 9 0 chr1 9534967 9535076 -272658588 + L2 LINE L2 3194 3303 -10 2404 99 0 3 chr1 9535328 9535632 -272658032 - AluSq SINE Alu -10 303 1 777 285 61 4 chr1 9535635 9535881 -272657783 + MIR SINE MIR 3 262 0 271 247 116 41 chr1 9535875 9536021 -272657643 + L2 LINE L2 3155 3311 -2 * 465 285 153 65 chr1 9536003 9536178 -272657486 - L2 LINE L2 -4 3309 3151 2467 56 0 26 chr1 9536178 9536481 -272657183 + AluY SINE Alu 1 295 -16 465 285 153 65 chr1 9536481 9536705 -272656959 - L2 LINE L2 -162 3151 2875 624 269 71 10 chr1 9537838 9538035 -272655629 - MIR SINE MIR -52 210 2 380 214 60 34 chr1 9538136 9538253 -272655411 + MIR SINE MIR 50 169 -93 274 388 0 0 chr1 9538735 9538838 -272654826 - L2 LINE L2 0 3272 3170 2477 86 0 0 chr1 9538838 9539141 -272654523 + AluY SINE Alu 1 303 -8 1557 154 39 27 chr1 9541522 9541782 -272651882 - AluJb SINE Alu -49 263 1 2155 121 17 0 chr1 9541815 9542112 -272651552 - AluSx SINE Alu -10 302 1 258 32 0 0 chr1 9542113 9542144 -272651520 + (TTTC)n Simple_repeat Simple_repeat 2 32 0 2109 112 4 4 chr1 9542144 9542422 -272651242 - AluSc SINE Alu -28 281 4 2456 88 0 0 chr1 9542425 9542730 -272650934 - AluSx SINE Alu -7 305 1 340 182 76 0 chr1 9542769 9542835 -272650829 - MER2 DNA MER2_type -1 344 274 499 110 0 0 chr1 9542835 9542917 -272650747 + L1PB1 LINE L1 6069 6150 -1 21 82 0 0 chr1 9542917 9542966 -272650698 + AT_rich Low_complexity Low_complexity 1 49 0 1271 135 19 5 chr1 9543016 9543223 -272650441 - MER2 DNA MER2_type -135 210 1 514 277 55 25 chr1 9543226 9543355 -272650309 - L1M4 LINE L1 -812 5334 5195 2198 128 0 0 chr1 9543355 9543660 -272650004 - AluSc SINE Alu -4 305 1 514 277 55 25 chr1 9543660 9543732 -272649932 - L1M4 LINE L1 -951 5195 5127 2254 101 16 10 chr1 9543757 9544065 -272649599 - AluSg SINE Alu 0 310 1 1414 175 15 94 chr1 9544068 9544399 -272649265 - AluJo SINE Alu -7 305 1 2590 68 0 0 chr1 9544421 9544731 -272648933 - AluY SINE Alu -1 310 1 2156 103 3 29 chr1 9544734 9544911 -272648753 - AluSg SINE Alu -6 304 137 2366 108 0 0 chr1 9544911 9545217 -272648447 - AluSg SINE Alu -4 306 1 2156 103 3 29 chr1 9545217 9545351 -272648313 - AluSg SINE Alu -173 137 1 1074 103 0 0 chr1 9545351 9545487 -272648177 - AluSq/x SINE Alu -177 136 1 652 283 123 24 chr1 9545588 9545970 -272647694 + L1MC4 LINE L1 7356 7775 -267 1794 142 17 30 chr1 9545976 9546107 -272647557 + AluSx SINE Alu 1 132 -180 2320 88 3 10 chr1 9546107 9546403 -272647261 + AluSg SINE Alu 1 294 -16 2026 138 10 0 chr1 9546406 9546695 -272646969 + AluSx SINE Alu 1 292 -20 2421 90 3 0 chr1 9546697 9546998 -272646666 + AluY SINE Alu 1 302 -9 1794 142 17 30 chr1 9546998 9547155 -272646509 + AluSx SINE Alu 135 292 -20 1522 168 0 0 chr1 9547155 9547381 -272646283 + AluJb SINE Alu 80 305 -7 1081 173 0 0 chr1 9547383 9547556 -272646108 + AluJb SINE Alu 136 308 -4 655 252 53 68 chr1 9547566 9547832 -272645832 + L1MC4 LINE L1 7781 8042 0 1143 129 12 12 chr1 9549292 9549463 -272644201 - AluJo/FRAM SINE Alu -9 303 133 2604 50 0 0 chr1 9549464 9549761 -272643903 - AluY SINE Alu -12 299 3 357 161 0 0 chr1 9549799 9549855 -272643809 + AluS SINE Alu 2 57 -243 701 138 124 83 chr1 9549955 9550055 -272643609 + L1M4 LINE L1 3543 3637 -2509 2357 88 0 3 chr1 9550055 9550351 -272643313 - AluSp SINE Alu -18 295 1 701 138 124 83 chr1 9550351 9550467 -272643197 + L1M4 LINE L1 3637 3768 -2378 892 258 28 14 chr1 9550484 9550697 -272642967 - MIR SINE MIR -44 218 3 275 349 77 26 chr1 9550715 9550910 -272642754 + L3 LINE CR1 1371 1575 -2 279 282 0 0 chr1 9551217 9551288 -272642376 + MIR3 SINE MIR 124 194 -14 2129 136 7 10 chr1 9551309 9551618 -272642046 - AluJb SINE Alu -4 308 1 2244 124 3 0 chr1 9552016 9552315 -272641349 + AluSx SINE Alu 1 300 -12 2532 57 0 7 chr1 9552576 9552877 -272640787 + AluSc SINE Alu 1 299 -10 1696 170 47 0 chr1 9553061 9553338 -272640326 + AluJb SINE Alu 4 293 -19 2217 107 13 0 chr1 9553338 9553637 -272640027 + AluSg SINE Alu 1 303 -7 1287 148 106 68 chr1 9553881 9554080 -272639584 + Charlie1 DNA MER1_type 2345 2535 -226 2429 103 0 0 chr1 9554080 9554382 -272639282 + AluSx SINE Alu 1 302 -10 1287 148 106 68 chr1 9554382 9554503 -272639161 + Charlie1 DNA MER1_type 2535 2685 -76 2012 131 13 45 chr1 9554503 9554817 -272638847 + AluSq SINE Alu 1 304 -9 1287 148 106 68 chr1 9554817 9554893 -272638771 + Charlie1 DNA MER1_type 2685 2757 -4 2621 74 0 0 chr1 9555092 9555403 -272638261 + AluY SINE Alu 1 311 0 346 143 86 0 chr1 9555637 9555707 -272637957 - MER103 DNA DNA -82 84 9 2228 119 3 7 chr1 9558500 9558802 -272634862 - AluSx SINE Alu -6 306 6 276 170 0 19 chr1 9559129 9559182 -272634482 + AluJb SINE Alu 85 136 -166 2439 93 0 0 chr1 9559182 9559492 -272634172 + AluY SINE Alu 1 310 -1 1079 76 0 0 chr1 9559650 9559781 -272633883 + AluSg1 SINE Alu 1 131 -178 2261 120 3 0 chr1 9559784 9560092 -272633572 + AluSx SINE Alu 1 309 -3 22 0 0 0 chr1 9560112 9560134 -272633530 + AT_rich Low_complexity Low_complexity 1 22 0 668 139 0 0 chr1 9560207 9560315 -272633349 + FLAM_A SINE Alu 35 142 0 1985 131 48 3 chr1 9560326 9560617 -272633047 + AluSx SINE Alu 1 304 -8 2242 119 0 3 chr1 9561728 9562030 -272631634 + AluSx SINE Alu 1 301 -11 2062 115 0 36 chr1 9562030 9562144 -272631520 + AluSc SINE Alu 1 118 -191 2342 74 0 27 chr1 9562144 9562441 -272631223 + AluSc SINE Alu 1 289 -20 2062 115 0 36 chr1 9562441 9562631 -272631033 + AluSc SINE Alu 118 294 -15 1767 153 0 80 chr1 9562775 9563101 -272630563 + AluJb SINE Alu 1 300 -12 1751 148 3 68 chr1 9563485 9563615 -272630049 + AluSx SINE Alu 7 144 -168 2387 89 3 3 chr1 9563615 9563917 -272629747 + AluSx SINE Alu 1 302 -10 1751 148 3 68 chr1 9563917 9564110 -272629554 + AluSx SINE Alu 144 309 -3 965 154 49 6 chr1 9564110 9564272 -272629392 + AluSq SINE Alu 134 302 -11 2484 46 0 0 chr1 9564444 9564766 -272628898 - AluY SINE Alu 0 322 1 201 158 0 0 chr1 9564955 9564993 -272628671 + A-rich Low_complexity Low_complexity 1 38 0 240 127 0 175 chr1 9564993 9565056 -272628608 + MLT1H LTR MaLR 498 549 0 574 346 72 33 chr1 9565059 9565663 -272628001 + L2 LINE L2 2650 3270 -2 1045 175 0 0 chr1 9566024 9566190 -272627474 + AluJb SINE Alu 134 299 -13 2311 106 6 3 chr1 9566232 9566543 -272627121 + AluSx SINE Alu 1 312 0 327 146 0 0 chr1 9566927 9566982 -272626682 + (TC)n Simple_repeat Simple_repeat 2 56 0 2183 90 11 4 chr1 9567479 9567781 -272625883 - AluSg SINE Alu 0 304 1 29 0 0 0 chr1 9567783 9567812 -272625852 + AT_rich Low_complexity Low_complexity 1 29 0 1325 134 15 0 chr1 9567832 9568034 -272625630 - AluSg/x SINE Alu -3 309 105 1243 138 5 5 chr1 9568140 9568329 -272625335 + AluSg/x SINE Alu 112 300 -12 1355 191 7 28 chr1 9569370 9569488 -272624176 + AluJb SINE Alu 21 140 -172 2201 120 0 13 chr1 9569488 9569788 -272623876 + AluSx SINE Alu 1 296 -16 1355 191 7 28 chr1 9569788 9569952 -272623712 + AluJb SINE Alu 140 297 -15 2347 109 6 3 chr1 9570054 9570365 -272623299 + AluSx SINE Alu 1 312 0 2197 113 3 3 chr1 9570427 9570720 -272622944 + AluSx SINE Alu 7 299 -13 967 320 106 18 chr1 9571076 9571632 -272622032 - L2 LINE L2 -338 2976 2372 2263 62 11 0 chr1 9571637 9571913 -272621751 - AluSp SINE Alu -9 304 26 1394 158 26 15 chr1 9572013 9572279 -272621385 + L1MB7 LINE L1 5742 6010 -174 2132 103 0 23 chr1 9572321 9572650 -272621014 + AluY SINE Alu 1 311 0 642 162 80 32 chr1 9572667 9572681 -272620983 + L1M4 LINE L1 5411 5423 -745 2383 78 0 36 chr1 9572681 9572990 -272620674 + AluY SINE Alu 1 298 -13 2041 110 0 38 chr1 9572990 9573309 -272620355 + AluSx SINE Alu 1 308 0 642 162 80 32 chr1 9573309 9573446 -272620218 + L1M4 LINE L1 5422 5566 -602 1323 305 106 24 chr1 9573446 9574264 -272619400 + L2 LINE L2 2375 3278 -35 299 240 211 10 chr1 9574271 9574375 -272619289 - MIR SINE MIR -62 146 22 2151 104 0 77 chr1 9575791 9576128 -272617536 + AluSx SINE Alu 1 311 -1 306 214 29 68 chr1 9577263 9577366 -272616298 + MIR SINE MIR 45 143 -65 832 128 8 0 chr1 9577749 9577866 -272615798 - FLAM_C SINE Alu -15 118 1 454 280 63 46 chr1 9577878 9578053 -272615611 - MER5A DNA MER1_type -6 183 6 2504 58 0 0 chr1 9579819 9580111 -272613553 - AluY SINE Alu -19 292 1 2286 121 0 0 chr1 9580430 9580728 -272612936 + AluSx SINE Alu 1 298 -14 2553 70 0 13 chr1 9580802 9581117 -272612547 + AluY SINE Alu 1 311 0 233 317 80 66 chr1 9581810 9581895 -272611769 - L2 LINE L2 -506 2808 2726 2061 113 49 0 chr1 9581895 9582179 -272611485 + AluSx SINE Alu 1 298 -14 233 317 80 66 chr1 9582179 9582443 -272611221 - L2 LINE L2 -588 2726 2454 2026 148 0 26 chr1 9584105 9584415 -272609249 - AluSx SINE Alu -9 303 2 2061 131 0 25 chr1 9584466 9584780 -272608884 - AluJo SINE Alu -6 306 1 342 120 0 0 chr1 9584844 9584919 -272608745 - Alu SINE Alu 0 307 233 1180 124 22 16 chr1 9584919 9585104 -272608560 - AluSp SINE Alu -127 186 1 1132 124 0 30 chr1 9585106 9585297 -272608367 - AluSg/x SINE Alu 0 306 121 2302 99 0 34 chr1 9585309 9585631 -272608033 - AluY SINE Alu 0 311 1 1567 213 17 15 chr1 9585634 9586098 -272607566 - L1M4 LINE L1 -2803 3343 2879 2353 96 0 3 chr1 9586105 9586407 -272607257 - AluSc SINE Alu -7 302 2 2519 66 0 0 chr1 9586408 9586709 -272606955 - AluY SINE Alu -10 301 1 1419 141 52 83 chr1 9586709 9586874 -272606790 - L1MCa LINE L1 -6090 336 184 1723 174 3 10 chr1 9586874 9587172 -272606492 - AluJb SINE Alu -16 296 1 1419 141 52 83 chr1 9587172 9587333 -272606331 - L1MCa LINE L1 -6242 184 20 2413 165 44 42 chr1 9587342 9587868 -272605796 - L1MB5 LINE L1 -41 6133 5607 365 165 0 25 chr1 9587885 9587964 -272605700 + C-rich Low_complexity Low_complexity 1 77 0 1771 102 0 17 chr1 9587973 9588209 -272605455 - AluSx SINE Alu -32 280 49 272 197 132 13 chr1 9588209 9588285 -272605379 - L1MB5 LINE L1 -555 5619 5535 203 274 8 65 chr1 9588314 9588411 -272605253 - L3 LINE CR1 -340 1237 1147 1615 177 13 33 chr1 9588411 9588716 -272604948 - AluJo SINE Alu -13 299 1 203 274 8 65 chr1 9588716 9588742 -272604922 - L3 LINE CR1 -430 1147 1121 360 200 32 42 chr1 9588771 9588866 -272604798 - FLAM_A SINE Alu -4 129 36 518 334 167 43 chr1 9588982 9589363 -272604301 - L3 LINE CR1 -608 969 518 2462 55 3 29 chr1 9589363 9589673 -272603991 - AluY SINE Alu -9 302 1 518 334 167 43 chr1 9589673 9589758 -272603906 - L3 LINE CR1 -1059 518 445 2124 114 20 3 chr1 9589778 9590084 -272603580 - AluSx SINE Alu -1 311 1 1806 143 7 36 chr1 9590089 9590396 -272603268 - AluJb SINE Alu -14 298 1 2468 81 0 0 chr1 9590602 9590900 -272602764 + AluSp SINE Alu 1 298 -15 2066 142 0 0 chr1 9591459 9591747 -272601917 + AluSx SINE Alu 1 288 -24 2363 94 0 3 chr1 9592755 9593052 -272600612 + AluSx SINE Alu 1 296 -16 213 65 0 0 chr1 9593845 9593876 -272599788 + (TTG)n Simple_repeat Simple_repeat 2 32 0 758 127 8 34 chr1 9593883 9594001 -272599663 - AluSg/x SINE Alu -28 282 168 228 235 26 52 chr1 9594009 9594124 -272599540 - AluSp SINE Alu -108 195 84 2196 102 14 0 chr1 9594541 9594824 -272598840 + AluSp SINE Alu 3 289 -24 316 182 0 4 chr1 9595980 9596050 -272597614 + FLAM_A SINE Alu 1 52 -80 912 126 0 0 chr1 9596100 9596227 -272597437 - FLAM_C SINE Alu -16 127 1 1097 174 0 0 chr1 9596293 9596471 -272597193 - FRAM SINE Alu -1 175 1 650 310 92 38 chr1 9596609 9596900 -272596764 - MARNA DNA Mariner -59 527 253 2220 98 10 26 chr1 9596900 9597206 -272596458 - AluSg SINE Alu -9 301 1 2402 104 3 0 chr1 9597208 9597517 -272596147 - AluSq SINE Alu -3 310 1 650 310 92 38 chr1 9597517 9597593 -272596071 - MARNA DNA Mariner -333 253 137 2119 125 0 0 chr1 9597829 9598138 -272595526 + AluSg SINE Alu 1 309 0 1659 95 151 0 chr1 9598976 9599228 -272594436 + AluSg SINE Alu 1 290 -20 2182 127 3 0 chr1 9599238 9599537 -272594127 + AluSp SINE Alu 1 300 -13 2232 131 0 0 chr1 9599537 9599835 -272593829 + AluSg SINE Alu 1 298 -12 2278 116 0 3 chr1 9599844 9600146 -272593518 + AluSx SINE Alu 1 301 -11 1743 146 0 4 chr1 9600146 9600405 -272593259 + AluSx SINE Alu 50 308 -4 2194 112 3 37 chr1 9600933 9601136 -272592528 - AluSq SINE Alu -2 311 122 2539 68 3 7 chr1 9601136 9601446 -272592218 - AluSx SINE Alu -3 309 1 2194 112 3 37 chr1 9601446 9601564 -272592100 - AluSq SINE Alu -191 122 1 2324 102 0 0 chr1 9601623 9601916 -272591748 - AluSc SINE Alu -16 293 1 467 225 0 115 chr1 9601995 9602058 -272591606 + HsTC2 DNA Tc2 1558 1627 -271 1694 175 28 3 chr1 9602058 9602343 -272591321 + AluJb SINE Alu 1 292 -20 467 225 0 115 chr1 9602343 9602461 -272591203 + HsTC2 DNA Tc2 1627 1718 -180 2461 94 0 0 chr1 9602461 9602769 -272590895 + AluSx SINE Alu 1 308 -4 1261 116 0 22 chr1 9602811 9602826 -272590838 + AluSc SINE Alu 120 134 -175 2386 98 3 0 chr1 9602826 9603123 -272590541 + AluSx SINE Alu 1 298 -14 1261 116 0 22 chr1 9603123 9603288 -272590376 + AluSc SINE Alu 134 296 -13 2137 110 10 7 chr1 9603290 9603580 -272590084 + AluY SINE Alu 3 293 -18 2350 110 0 3 chr1 9603728 9604038 -272589626 + AluSx SINE Alu 1 309 -3 736 112 32 8 chr1 9604325 9604450 -272589214 - AluY SINE Alu -171 140 13 1882 173 0 0 chr1 9604704 9605023 -272588641 + AluJb SINE Alu 1 312 0 2127 143 0 0 chr1 9605374 9605668 -272587996 - AluSx SINE Alu -14 298 5 2317 114 0 0 chr1 9606089 9606388 -272587276 + AluSx SINE Alu 2 300 -12 2193 109 0 56 chr1 9606723 9606861 -272586803 + AluSx SINE Alu 1 145 -167 207 100 0 0 chr1 9606861 9606891 -272586773 + (TA)n Simple_repeat Simple_repeat 1 30 0 2193 109 0 56 chr1 9606891 9607072 -272586592 + AluSx SINE Alu 145 302 -10 702 157 0 8 chr1 9607191 9607312 -272586352 - AluSg/x SINE Alu -5 307 188 1723 148 25 21 chr1 9607499 9607782 -272585882 - AluJb SINE Alu -28 284 1 1528 231 23 11 chr1 9608116 9608467 -272585197 - L2 LINE L2 -562 2752 2398 241 222 0 0 chr1 9608476 9608521 -272585143 + FRAM SINE Alu 4 48 -116 * 495 137 0 0 chr1 9608518 9608591 -272585073 - 7SK RNA RNA 0 193 121 721 142 0 16 chr1 9608628 9608755 -272584909 - 7SK RNA RNA -68 125 1 898 158 0 0 chr1 9608755 9608888 -272584776 + FRAM SINE Alu 34 166 -10 592 222 23 34 chr1 9608897 9609073 -272584591 - L2 LINE L2 -928 2386 2213 1283 214 34 34 chr1 9609073 9609396 -272584268 - MLT1B LTR MaLR 0 390 68 1903 164 31 0 chr1 9610020 9610312 -272583352 + AluJb SINE Alu 1 301 -11 2109 112 20 3 chr1 9610361 9610655 -272583009 - AluSg SINE Alu -11 299 1 2109 127 7 0 chr1 9610799 9611122 -272582542 - AluSx SINE Alu 0 325 1 724 200 0 0 chr1 9611402 9611527 -272582137 + FRAM SINE Alu 9 133 -43 551 130 176 0 chr1 9611677 9611785 -272581879 - AluJo SINE Alu -178 134 8 2525 57 0 3 chr1 9611800 9612101 -272581563 - AluSg SINE Alu -10 300 1 21 36 0 0 chr1 9613793 9613821 -272579843 + AT_rich Low_complexity Low_complexity 1 28 0 2325 92 0 16 chr1 9613856 9614159 -272579505 + AluSx SINE Alu 1 298 -14 2491 68 3 0 chr1 9614276 9614572 -272579092 + AluSc SINE Alu 1 297 -12 2079 141 16 0 chr1 9614578 9614883 -272578781 + AluSx SINE Alu 1 310 -2 291 292 299 0 chr1 9614944 9615088 -272578576 - L2 LINE L2 -214 3058 2872 1011 66 8 0 chr1 9615452 9615573 -272578091 + AluY SINE Alu 2 123 -188 1892 49 0 13 chr1 9615589 9615814 -272577850 + AluY SINE Alu 1 222 -89 1921 178 0 0 chr1 9616732 9617041 -272576623 - AluSx SINE Alu -3 309 1 400 308 116 61 chr1 9617046 9617226 -272576438 + L1M4 LINE L1 4607 4776 -1370 1400 114 137 107 chr1 9617226 9617525 -272576139 + AluSg SINE Alu 1 308 -2 * 1846 148 58 0 chr1 9617524 9617802 -272575862 + AluSx SINE Alu 1 294 -18 400 308 116 61 chr1 9617525 9618215 -272575449 + L1M4 LINE L1 4776 5233 -913 680 129 11 0 chr1 9618228 9618321 -272575343 + AluJb SINE Alu 195 288 -24 1773 170 25 0 chr1 9618425 9618708 -272574956 + AluJb SINE Alu 1 290 -22 2019 148 0 16 chr1 9619014 9619324 -272574340 - AluJo SINE Alu -7 305 1 1750 128 84 7 chr1 9619327 9619469 -272574195 - AluSx SINE Alu -17 295 165 2456 76 3 0 chr1 9619469 9619772 -272573892 - AluY SINE Alu -7 304 1 1750 128 84 7 chr1 9619772 9619903 -272573761 - AluSx SINE Alu -147 165 1 1131 53 0 8 chr1 9619903 9620036 -272573628 - AluY SINE Alu -179 132 1 780 173 15 8 chr1 9620066 9620199 -272573465 + AluJo SINE Alu 3 136 -176 189 330 22 44 chr1 9620512 9620603 -272573061 + MIR SINE MIR 27 115 -147 2339 101 3 0 chr1 9620740 9621036 -272572628 - AluSx SINE Alu -15 297 1 2179 126 7 0 chr1 9621426 9621736 -272571928 - AluSx SINE Alu 0 312 1 677 126 0 0 chr1 9621741 9621836 -272571828 - FLAM_C SINE Alu -14 129 35 787 216 20 102 chr1 9622551 9622632 -272571032 + MIR SINE MIR 7 93 -169 2153 127 7 10 chr1 9622632 9622939 -272570725 - AluSx SINE Alu -6 306 1 1804 187 10 3 chr1 9622949 9623259 -272570405 - AluJb SINE Alu 0 312 1 787 216 20 102 chr1 9623259 9623411 -272570253 + MIR SINE MIR 102 231 -31 231 114 0 0 chr1 9623568 9623603 -272570061 + (TA)n Simple_repeat Simple_repeat 1 35 0 2366 75 0 13 chr1 9623603 9623908 -272569756 - AluY SINE Alu -10 301 1 2451 60 0 80 chr1 9624169 9624505 -272569159 - AluSq SINE Alu -4 309 1 2175 108 0 20 chr1 9624517 9624822 -272568842 - AluSq SINE Alu -14 299 1 1229 163 8 67 chr1 9625233 9625313 -272568351 + AluJo SINE Alu 63 146 -166 2384 82 3 10 chr1 9625313 9625641 -272568023 + AluY SINE Alu 1 311 0 1229 163 8 67 chr1 9625641 9625800 -272567864 + AluJo SINE Alu 146 288 -24 2171 92 7 3 chr1 9625856 9626162 -272567502 + AluSq SINE Alu 1 307 0 546 241 152 7 chr1 9626897 9627042 -272566622 - MIR3 SINE MIR -11 197 32 3084 138 23 32 chr1 9627675 9627981 -272565683 - L1MB5 LINE L1 -3 6171 5871 2045 125 44 7 chr1 9627981 9628277 -272565387 - AluSq SINE Alu -4 309 3 3084 138 23 32 chr1 9628277 9628526 -272565138 - L1MB5 LINE L1 -303 5871 5621 2205 91 14 11 chr1 9628526 9628843 -272564821 - AluSp SINE Alu 0 318 1 2116 119 31 0 chr1 9628900 9629194 -272564470 + AluSg SINE Alu 1 303 -7 1685 168 31 3 chr1 9629273 9629559 -272564105 + AluSx SINE Alu 2 295 -17 448 271 43 15 chr1 9629703 9629876 -272563788 + MIR SINE MIR 42 213 -49 2441 64 27 0 chr1 9630687 9630982 -272562682 + AluY SINE Alu 1 303 -8 2247 100 4 0 chr1 9630989 9631269 -272562395 + AluSg SINE Alu 9 289 -21 23 0 0 0 chr1 9631436 9631459 -272562205 + AT_rich Low_complexity Low_complexity 1 23 0 1996 67 49 53 chr1 9631531 9631838 -272561826 - AluSp SINE Alu 0 308 3 275 170 0 19 chr1 9632163 9632216 -272561448 + AluJb SINE Alu 85 136 -166 2310 84 0 0 chr1 9632216 9632530 -272561134 + AluY SINE Alu 1 314 0 1069 76 0 0 chr1 9632685 9632816 -272560848 + AluSg1 SINE Alu 1 131 -178 2254 120 3 0 chr1 9632819 9633127 -272560537 + AluSx SINE Alu 1 309 -3 22 0 0 0 chr1 9633147 9633169 -272560495 + AT_rich Low_complexity Low_complexity 1 22 0 708 139 0 0 chr1 9633242 9633350 -272560314 + FLAM_A SINE Alu 35 142 0 1989 127 48 3 chr1 9633359 9633650 -272560014 + AluSx SINE Alu 1 304 -8 2242 119 0 3 chr1 9634761 9635063 -272558601 + AluSx SINE Alu 1 301 -11 885 175 121 0 chr1 9635063 9635229 -272558435 + AluYb8 SINE Alu 1 186 -132 1813 180 0 0 chr1 9635369 9635658 -272558006 - AluSx SINE Alu -23 289 1 396 304 116 62 chr1 9635663 9635843 -272557821 + L1M4 LINE L1 4607 4776 -1370 1411 113 141 100 chr1 9635843 9636134 -272557530 + AluSg SINE Alu 1 303 -7 1846 148 58 0 chr1 9636134 9636411 -272557253 + AluSx SINE Alu 1 294 -18 396 304 116 62 chr1 9636411 9636824 -272556840 + L1M4 LINE L1 4775 5233 -913 680 129 11 0 chr1 9636837 9636930 -272556734 + AluJb SINE Alu 195 288 -24 1773 170 25 0 chr1 9637034 9637317 -272556347 + AluJb SINE Alu 1 290 -22 1994 147 0 19 chr1 9637623 9637935 -272555729 - AluJo SINE Alu -6 306 1 1773 124 84 7 chr1 9637938 9638080 -272555584 - AluSx SINE Alu -17 295 165 2456 76 3 0 chr1 9638080 9638383 -272555281 - AluY SINE Alu -7 304 1 1773 124 84 7 chr1 9638383 9638514 -272555150 - AluSx SINE Alu -147 165 1 1131 53 0 8 chr1 9638514 9638647 -272555017 - AluY SINE Alu -179 132 1 780 173 15 8 chr1 9638677 9638810 -272554854 + AluJo SINE Alu 3 136 -176 189 330 22 44 chr1 9639123 9639214 -272554450 + MIR SINE MIR 27 115 -147 2348 101 3 0 chr1 9639351 9639648 -272554016 - AluSx SINE Alu -14 298 1 2196 123 7 0 chr1 9640038 9640348 -272553316 - AluSx SINE Alu 0 312 1 677 126 0 0 chr1 9640353 9640448 -272553216 - FLAM_C SINE Alu -14 129 35 765 219 20 106 chr1 9641163 9641244 -272552420 + MIR SINE MIR 7 93 -169 2124 130 7 10 chr1 9641244 9641551 -272552113 - AluSx SINE Alu -6 306 1 765 219 20 106 chr1 9641551 9641562 -272552102 + MIR SINE MIR 93 103 -159 1661 189 19 3 chr1 9641562 9641869 -272551795 - AluJb SINE Alu 0 312 1 765 219 20 106 chr1 9641869 9642021 -272551643 + MIR SINE MIR 103 231 -31 216 97 0 0 chr1 9642178 9642209 -272551455 + (TA)n Simple_repeat Simple_repeat 1 31 0 2442 73 0 13 chr1 9642209 9642523 -272551141 - AluY SINE Alu -1 310 1 2586 75 0 0 chr1 9642784 9643092 -272550572 - AluSq SINE Alu -5 308 1 231 330 30 20 chr1 9643937 9644037 -272549627 + MIR SINE MIR 58 158 -104 1224 99 0 29 chr1 9646516 9646716 -272546948 + AluSg/x SINE Alu 129 312 0 642 162 80 32 chr1 9646733 9646747 -272546917 + L1M4 LINE L1 5411 5423 -745 2383 78 0 36 chr1 9646747 9647056 -272546608 + AluY SINE Alu 1 298 -13 2041 110 0 38 chr1 9647056 9647375 -272546289 + AluSx SINE Alu 1 308 0 642 162 80 32 chr1 9647375 9647512 -272546152 + L1M4 LINE L1 5422 5566 -602 1281 304 109 24 chr1 9647512 9648329 -272545335 + L2 LINE L2 2375 3278 -35 299 240 211 10 chr1 9648336 9648440 -272545224 - MIR SINE MIR -62 146 22 2161 104 0 74 chr1 9649855 9650192 -272543472 + AluSx SINE Alu 1 312 0 306 214 29 68 chr1 9651326 9651429 -272542235 + MIR SINE MIR 45 143 -65 821 137 8 0 chr1 9651812 9651929 -272541735 - FLAM_C SINE Alu -15 118 1 454 280 63 46 chr1 9651941 9652116 -272541548 - MER5A DNA MER1_type -6 183 6 2496 58 0 0 chr1 9653881 9654173 -272539491 - AluY SINE Alu -19 292 1 2286 121 0 0 chr1 9654492 9654790 -272538874 + AluSx SINE Alu 1 298 -14 2553 70 0 13 chr1 9654864 9655179 -272538485 + AluY SINE Alu 1 311 0 233 317 80 66 chr1 9655871 9655956 -272537708 - L2 LINE L2 -506 2808 2726 2061 113 49 0 chr1 9655956 9656240 -272537424 + AluSx SINE Alu 1 298 -14 233 317 80 66 chr1 9656240 9656504 -272537160 - L2 LINE L2 -588 2726 2454 2026 148 0 26 chr1 9658168 9658478 -272535186 - AluSx SINE Alu -9 303 2 2061 131 0 25 chr1 9658529 9658843 -272534821 - AluJo SINE Alu -6 306 1 342 120 0 0 chr1 9658907 9658982 -272534682 - AluSx SINE Alu 0 308 234 1354 140 0 0 chr1 9658982 9659168 -272534496 - AluSx SINE Alu -126 186 1 229 330 30 20 chr1 9660012 9660112 -272533552 + MIR SINE MIR 58 158 -104 373 275 167 28 chr1 9663198 9663286 -272530378 + L2 LINE L2 2607 2681 -633 1577 139 0 16 chr1 9663286 9663544 -272530120 - AluJo SINE Alu -21 291 38 373 275 167 28 chr1 9663544 9663779 -272529885 + L2 LINE L2 2681 2975 -339 1391 174 34 19 chr1 9663830 9664094 -272529570 - AluJo SINE Alu -41 271 4 2019 135 3 3 chr1 9665877 9666189 -272527475 + AluSx SINE Alu 1 312 0 438 20 0 0 chr1 9666384 9666435 -272527229 + (CA)n Simple_repeat Simple_repeat 2 52 0 2172 92 0 3 chr1 9668461 9668753 -272524911 + AluSg SINE Alu 2 292 -18 24 0 0 0 chr1 9669448 9669472 -272524192 + AT_rich Low_complexity Low_complexity 1 24 0 5560 65 7 7 chr1 9669510 9670214 -272523450 - L1PA8 LINE L1 -3 6169 5466 210 214 0 0 chr1 9670239 9670281 -272523383 - MIR SINE MIR -110 152 111 265 350 60 0 chr1 9670334 9670451 -272523213 + MIR3 SINE MIR 45 168 -40 735 167 78 111 chr1 9670480 9670580 -272523084 + MER45A DNA AcHobo 2 104 -1477 1620 180 42 0 chr1 9670580 9670869 -272522795 - AluJo SINE Alu -11 301 1 2303 87 3 3 chr1 9670875 9671184 -272522480 - AluSq SINE Alu -4 309 1 735 167 78 111 chr1 9671184 9671256 -272522408 + MER45A DNA AcHobo 109 175 -3 235 301 147 15 chr1 9671782 9671918 -272521746 - L2 LINE L2 -9 3263 3110 207 289 18 53 chr1 9673473 9673587 -272520077 + G-rich Low_complexity Low_complexity 2 111 0 434 300 180 27 chr1 9674506 9674873 -272518791 - L2 LINE L2 -547 2767 2345 398 229 76 30 chr1 9674850 9674981 -272518683 + MIR SINE MIR 71 207 -55 * 1333 164 5 0 chr1 9674992 9675205 -272518459 + AluJb SINE Alu 87 300 -12 2025 107 41 0 chr1 9675205 9675496 -272518168 + AluSp SINE Alu 1 303 -10 228 227 0 0 chr1 9675511 9675555 -272518109 + MIR SINE MIR 218 261 -1 782 211 47 26 chr1 9675813 9676003 -272517661 - MER20 DNA MER1_type -25 194 1 221 348 136 25 chr1 9676032 9676243 -272517421 - MIR3 SINE MIR -24 238 1 528 254 71 3 chr1 9676759 9676928 -272516736 - MIR SINE MIR -63 145 13 2058 106 41 0 chr1 9676978 9677270 -272516394 + AluSc SINE Alu 1 304 -5 413 149 14 14 chr1 9677378 9677452 -272516212 - AluSg/x SINE Alu -22 287 214 548 231 64 6 chr1 9677554 9677710 -272515954 - AluSq SINE Alu -148 165 1 842 97 49 56 chr1 9677738 9677882 -272515782 + AluJb SINE Alu 6 148 -164 1794 66 125 15 chr1 9677882 9678154 -272515510 + AluSg SINE Alu 1 302 -8 482 171 152 0 chr1 9678848 9678953 -272514711 + MER20 DNA MER1_type 3 123 -96 241 272 168 8 chr1 9679044 9679169 -272514495 + L2 LINE L2 2908 3052 -220 719 207 0 0 chr1 9681243 9681364 -272512300 + AluJo/FLAM SINE Alu 2 122 -190 1077 114 0 45 chr1 9681364 9681540 -272512124 - AluSg/x SINE Alu 0 312 145 2201 96 0 0 chr1 9681640 9681931 -272511733 + AluSc SINE Alu 5 295 -14 426 219 187 0 chr1 9681966 9682089 -272511575 + MLT1H LTR MaLR 35 180 -369 2216 81 17 3 chr1 9682540 9682835 -272510829 - AluY SINE Alu -12 299 1 342 278 122 17 chr1 9682841 9683136 -272510528 - HAL1 LINE L1 -5 2502 2177 1479 263 71 34 chr1 9683142 9683480 -272510184 - HAL1 LINE L1 -923 1584 1211 1793 123 4 0 chr1 9683480 9683740 -272509924 - AluSx SINE Alu -12 300 40 1479 263 71 34 chr1 9683740 9684017 -272509647 - HAL1 LINE L1 -1296 1211 946 262 296 14 0 chr1 9684089 9684160 -272509504 - HAL1 LINE L1 -1798 709 638 298 261 87 87 chr1 9684161 9684276 -272509388 + MIR SINE MIR 5 119 -143 1262 117 0 6 chr1 9684279 9684459 -272509205 - AluSg/x SINE Alu 0 310 132 1882 71 0 20 chr1 9684459 9684712 -272508952 - AluY SINE Alu -11 300 53 282 114 0 0 chr1 9684812 9684856 -272508808 - AluJ/FLAM SINE Alu -224 78 35 1086 158 5 41 chr1 9684864 9685085 -272508579 + AluJo SINE Alu 87 299 -13 1871 113 53 3 chr1 9685189 9685472 -272508192 + AluY SINE Alu 1 297 -14 2333 87 0 0 chr1 9685559 9685859 -272507805 + AluSc SINE Alu 1 300 -9 2042 131 3 6 chr1 9685913 9686225 -272507439 - AluSx SINE Alu -1 311 1 1432 178 65 7 chr1 9686245 9686520 -272507144 + AluJo SINE Alu 3 293 -19 2062 128 0 0 chr1 9686538 9686834 -272506830 + AluSx SINE Alu 1 296 -16 24 38 0 38 chr1 9686834 9686852 -272506812 + AT_rich Low_complexity Low_complexity 1 18 -33 2137 116 0 0 chr1 9686852 9687144 -272506520 + AluSx SINE Alu 1 292 -20 24 38 0 38 chr1 9687144 9687178 -272506486 + AT_rich Low_complexity Low_complexity 18 51 0 622 249 83 5 chr1 9687249 9687454 -272506210 + HAL1 LINE L1 1359 1579 -928 1872 128 0 43 chr1 9687463 9687768 -272505896 + AluSx SINE Alu 1 292 -20 298 244 37 24 chr1 9687873 9687955 -272505709 - HAL1 LINE L1 -767 1740 1658 278 266 195 0 chr1 9687948 9688061 -272505603 + HAL1 LINE L1 1678 1812 -695 * 1584 157 29 55 chr1 9688208 9688520 -272505144 + AluJb SINE Alu 2 305 -7 2356 69 0 3 chr1 9688590 9688893 -272504771 - AluY SINE Alu -9 302 1 194 158 26 0 chr1 9688942 9688980 -272504684 + L2 LINE L2 2720 2758 -556 260 226 97 0 chr1 9689081 9689143 -272504521 + MIR SINE MIR 20 87 -121 2146 97 7 3 chr1 9689321 9689619 -272504045 - AluSg SINE Alu -11 299 1 303 273 15 0 chr1 9689640 9689706 -272503958 + L1MC/D LINE L1 5709 5775 -2033 1915 145 0 0 chr1 9689796 9690104 -272503560 - AluSx SINE Alu 0 308 1 296 178 0 0 chr1 9690121 9690166 -272503498 + Alu SINE Alu 2 46 -256 1885 115 4 18 chr1 9790172 9790451 -272403213 + LTR8 LTR ERV1 417 691 0 914 185 33 0 chr1 9790471 9790622 -272403042 + FRAM SINE Alu 1 155 -21 2101 107 4 0 chr1 9790622 9790892 -272402772 + AluSx SINE Alu 1 271 -41 182 36 0 36 chr1 9790898 9790926 -272402738 + (CAAAA)n Simple_repeat Simple_repeat 3 29 0 634 173 0 0 chr1 9791142 9791246 -272402418 + AluJb SINE Alu 2 105 -207 711 276 268 8 chr1 9791246 9791630 -272402034 + MER20B DNA MER1_type 300 783 0 2176 126 7 0 chr1 9791760 9792062 -272401602 - AluSx SINE Alu -8 304 1 2190 105 7 0 chr1 9792082 9792378 -272401286 - AluSx SINE Alu -14 298 1 1549 155 119 10 chr1 9792551 9792854 -272400810 + MER44D DNA MER2_type 1 606 -3 2261 97 0 10 chr1 9793427 9793727 -272399937 - AluY SINE Alu -14 297 1 2290 103 7 0 chr1 9793727 9794028 -272399636 - AluSx SINE Alu -9 303 1 614 239 0 136 chr1 9794172 9794258 -272399406 - MIR SINE MIR -12 250 154 1850 158 7 10 chr1 9794258 9794550 -272399114 - AluJo SINE Alu -21 291 1 614 239 0 136 chr1 9794550 9794706 -272398958 - MIR SINE MIR -108 154 41 2558 190 57 45 chr1 9794845 9795249 -272398415 + L1ME1 LINE L1 5516 5914 -420 2014 137 10 13 chr1 9795249 9795556 -272398108 + AluJb SINE Alu 1 306 -6 2558 190 57 45 chr1 9795556 9795806 -272397858 + L1ME1 LINE L1 5914 6334 0 298 251 176 21 chr1 9795921 9796038 -272397626 + MIR SINE MIR 14 147 -61 209 191 0 21 chr1 9796072 9796119 -272397545 - L2 LINE L2 -1 3312 3267 1605 182 27 0 chr1 9796411 9796669 -272396995 + AluJo SINE Alu 1 265 -47 1069 119 0 13 chr1 9796877 9797028 -272396636 + AluSg1 SINE Alu 1 149 -160 280 335 12 24 chr1 9797202 9797372 -272396292 + T-rich Low_complexity Low_complexity 2 169 0 1429 163 57 43 chr1 9798119 9798401 -272395263 + AluJo SINE Alu 1 286 -26 237 33 0 0 chr1 9798401 9798431 -272395233 + (CAAT)n Simple_repeat Simple_repeat 2 31 0 22 0 0 0 chr1 9799260 9799282 -272394382 + AT_rich Low_complexity Low_complexity 1 22 0 260 208 38 66 chr1 9799515 9799621 -272394043 + MIR3 SINE MIR 106 208 0 1326 132 78 5 chr1 9801515 9801734 -272391930 - MER46A DNA MER2_type -1 235 1 239 79 26 0 chr1 9801827 9801865 -272391799 + (TCCA)n Simple_repeat Simple_repeat 3 41 0 208 217 33 17 chr1 9801867 9801927 -272391737 - L2 LINE L2 -5 3308 3248 207 239 60 45 chr1 9802326 9802393 -272391271 - L2 LINE L2 -9 3263 3196 2007 102 46 14 chr1 9803721 9804006 -272389658 + AluSg SINE Alu 1 294 -16 1761 121 0 0 chr1 9804053 9804292 -272389372 + AluSq SINE Alu 1 239 -74 321 277 27 18 chr1 9804294 9804406 -272389258 + L1ME2 LINE L1 3387 3499 -2647 1895 163 0 0 chr1 9804428 9804723 -272388941 + AluSx SINE Alu 1 295 -17 2525 84 0 0 chr1 9804726 9805035 -272388629 + AluSc SINE Alu 1 309 0 2445 225 48 73 chr1 9805038 9805522 -272388142 + L1ME2 LINE L1 3475 3970 -2176 2343 91 0 7 chr1 9805522 9805819 -272387845 + AluSg1 SINE Alu 1 295 -14 1513 168 7 41 chr1 9805819 9806111 -272387553 - AluJo SINE Alu -30 282 1 2445 225 48 73 chr1 9806111 9806451 -272387213 + L1ME2 LINE L1 3969 4274 -1872 2333 87 0 7 chr1 9806451 9806750 -272386914 + AluSx SINE Alu 1 297 -15 2445 225 48 73 chr1 9806750 9806890 -272386774 + L1ME2 LINE L1 4274 4416 -1730 1804 154 6 41 chr1 9806890 9807209 -272386455 + AluJo SINE Alu 1 308 -4 832 209 61 26 chr1 9807242 9807418 -272386246 + L1ME2 LINE L1 5551 5740 -426 1929 238 136 17 chr1 9807418 9807948 -272385716 + MLT1E LTR MaLR 1 593 0 832 209 61 26 chr1 9807948 9808032 -272385632 + L1ME2 LINE L1 5740 5820 -346 943 133 0 0 chr1 9808036 9808171 -272385493 + AluSq/x SINE Alu 1 135 -177 2095 123 3 32 chr1 9808171 9808480 -272385184 + AluSq SINE Alu 1 300 -13 706 222 81 40 chr1 9808497 9808745 -272384919 + L1ME2 LINE L1 5825 6082 -82 265 106 64 21 chr1 9808747 9808794 -272384870 + L1ME1 LINE L1 6063 6111 -55 2202 117 3 3 chr1 9808894 9809193 -272384471 + AluSc SINE Alu 1 299 -10 886 170 0 0 chr1 9809205 9809340 -272384324 + AluJb SINE Alu 153 287 -25 839 251 59 12 chr1 9809390 9809645 -272384019 + L1MC4 LINE L1 7323 7589 -453 486 214 9 9 chr1 9809661 9809773 -272383891 + L1ME LINE L1 5655 5766 -404 2397 88 3 0 chr1 9809777 9810071 -272383593 + AluSc SINE Alu 1 295 -14 2180 111 0 3 chr1 9810086 9810374 -272383290 + AluSx SINE Alu 8 294 -18 1918 156 7 10 chr1 9810384 9810685 -272382979 + AluJb SINE Alu 1 300 -12 234 248 80 32 chr1 9810686 9810811 -272382853 + L1ME LINE L1 5757 5887 -283 1546 162 21 0 chr1 9810811 9811075 -272382589 + AluJo SINE Alu 40 308 0 2121 110 39 26 chr1 9811081 9811389 -272382275 + AluSx SINE Alu 1 312 0 675 206 72 65 chr1 9811456 9811648 -272382016 + L1MC4 LINE L1 7720 7916 -126 276 30 0 0 chr1 9811648 9811681 -272381983 + (GA)n Simple_repeat Simple_repeat 2 34 0 675 206 72 65 chr1 9811681 9811809 -272381855 + L1MC4 LINE L1 7916 8042 0 2260 111 3 7 chr1 9811814 9812121 -272381543 + AluSx SINE Alu 1 306 -6 1063 107 0 57 chr1 9812122 9812305 -272381359 + AluSg/x SINE Alu 134 307 0 294 312 135 57 chr1 9812405 9812484 -272381180 - MIR3 SINE MIR -19 243 172 1028 190 0 6 chr1 9812484 9812658 -272381006 - FAM SINE Alu -2 173 1 294 312 135 57 chr1 9812658 9812805 -272380859 - MIR3 SINE MIR -90 172 4 269 150 0 0 chr1 9813065 9813105 -272380559 + Alu SINE Alu 1 40 -268 1681 192 0 0 chr1 9813133 9813414 -272380250 - AluJb SINE Alu -31 281 1 2413 70 0 20 chr1 9813458 9813759 -272379905 + AluY SINE Alu 1 295 -16 900 178 41 0 chr1 9813762 9813908 -272379756 + AluJb SINE Alu 133 284 -28 884 246 8 54 chr1 9814274 9814320 -272379344 - MIR SINE MIR -32 230 183 2083 116 3 3 chr1 9814320 9814626 -272379038 + AluSx SINE Alu 1 306 0 884 246 8 54 chr1 9814626 9814818 -272378846 - MIR SINE MIR -79 183 2 2493 70 0 0 chr1 9815139 9815438 -272378226 + AluY SINE Alu 1 299 -12 2064 115 35 0 chr1 9815718 9816006 -272377658 + AluSx SINE Alu 1 298 -14 292 218 46 35 chr1 9816572 9816659 -272377005 + MIR SINE MIR 118 205 -57 2420 74 3 0 chr1 9817780 9818079 -272375585 - AluSp SINE Alu -13 300 1 287 277 84 0 chr1 9818201 9818284 -272375380 - L2 LINE L2 -18 3254 3165 1065 186 0 0 chr1 9818458 9818641 -272375023 + FRAM SINE Alu 1 175 -1 2257 107 3 3 chr1 9818823 9819133 -272374531 - AluSx SINE Alu 0 312 3 838 146 0 0 chr1 9819164 9819294 -272374370 + FRAM SINE Alu 1 40 0 440 262 73 43 chr1 9820637 9820836 -272372828 + MIR SINE MIR 21 216 -46 2221 75 3 3 chr1 9821422 9821704 -272371960 - AluY SINE Alu -6 305 24 2358 91 0 7 chr1 9821874 9822171 -272371493 - AluSg1 SINE Alu -14 295 1 1189 249 47 20 chr1 9822205 9822655 -272371009 - L1M4 LINE L1 -2210 3936 3475 2546 84 0 0 chr1 9822658 9822967 -272370697 - AluSc SINE Alu 0 309 1 1974 156 0 0 chr1 9822970 9823265 -272370399 - AluSx SINE Alu -17 295 1 396 292 18 18 chr1 9823287 9823400 -272370264 - L1M4 LINE L1 -2647 3499 3387 1773 121 0 0 chr1 9823402 9823641 -272370023 - AluSq SINE Alu -74 239 1 1564 279 102 21 chr1 9823646 9823683 -272369981 - L1MEc LINE L1 -5331 1065 1032 2414 76 0 13 chr1 9823683 9823987 -272369677 - AluY SINE Alu -11 300 1 1564 279 102 21 chr1 9823987 9824170 -272369494 - L1MEc LINE L1 -5364 1032 865 2482 75 0 0 chr1 9824170 9824465 -272369199 - AluSp SINE Alu -18 295 1 1564 279 102 21 chr1 9824465 9825195 -272368469 - L1MEc LINE L1 -5531 865 37 233 186 0 0 chr1 9825196 9825239 -272368425 - L2 LINE L2 -565 2749 2707 * 415 207 71 71 chr1 9825223 9825363 -272368301 - MIR SINE MIR -59 203 64 1951 139 37 7 chr1 9825885 9826179 -272367485 - AluJb SINE Alu -9 303 1 862 114 18 0 chr1 9826237 9826351 -272367313 - AluSq/x SINE Alu -196 116 1 227 216 20 0 chr1 9826422 9826473 -272367191 + AluJb SINE Alu 120 171 -131 1631 161 51 15 chr1 9826570 9826844 -272366820 - AluJo SINE Alu -17 295 12 2194 130 0 7 chr1 9826859 9827167 -272366497 - AluSx SINE Alu -6 306 1 503 230 139 24 chr1 9827650 9827815 -272365849 + MIR SINE MIR 50 233 -29 678 278 129 93 chr1 9827907 9828615 -272365049 - L2 LINE L2 0 3272 2508 1768 170 0 0 chr1 9828615 9828886 -272364778 - AluJo SINE Alu -15 297 27 678 278 129 93 chr1 9828886 9829181 -272364483 - L2 LINE L2 -764 2508 2225 22 0 0 0 chr1 9832063 9832085 -272361579 + AT_rich Low_complexity Low_complexity 1 22 0 36 0 0 0 chr1 9832141 9832177 -272361487 + AT_rich Low_complexity Low_complexity 1 36 0 23 0 0 0 chr1 9832277 9832300 -272361364 + AT_rich Low_complexity Low_complexity 1 23 0 1794 178 0 10 chr1 9833182 9833523 -272360141 + AluJo SINE Alu 1 312 0 2424 87 0 0 chr1 9834630 9834930 -272358734 - AluSg SINE Alu -10 300 1 1822 113 117 11 chr1 9835305 9835587 -272358077 + AluSx SINE Alu 1 312 0 2107 137 0 0 chr1 9835763 9836056 -272357608 - AluSx SINE Alu -19 293 1 2361 51 19 29 chr1 9836476 9836788 -272356876 - AluY SINE Alu -2 309 1 1680 170 25 11 chr1 9836820 9837102 -272356562 + AluJb SINE Alu 1 286 -26 2048 141 0 16 chr1 9837973 9838286 -272355378 - AluJo SINE Alu -4 308 1 1028 96 0 0 chr1 9838362 9838497 -272355167 + AluSg/x SINE Alu 178 312 0 2293 119 7 0 chr1 9838902 9839212 -272354452 - AluSx SINE Alu 0 312 1 385 190 20 10 chr1 9839885 9839985 -272353679 + CT-rich Low_complexity Low_complexity 5 105 0 1919 116 11 22 chr1 9839991 9840268 -272353396 - AluSx SINE Alu -38 274 1 1520 162 102 4 chr1 9840366 9840632 -272353032 + AluJo SINE Alu 1 292 -20 701 203 7 22 chr1 9840717 9840855 -272352809 - AluJo SINE Alu -176 136 1 2182 109 0 0 chr1 9840863 9841139 -272352525 - AluSx SINE Alu -16 296 21 2230 92 13 13 chr1 9841450 9841755 -272351909 - AluSp SINE Alu -8 305 1 315 283 217 7 chr1 9842280 9842432 -272351232 - MIR SINE MIR -55 207 24 2331 57 54 3 chr1 9843373 9843669 -272349995 - AluY SINE Alu 0 311 1 2405 56 0 40 chr1 9844122 9844426 -272349238 - AluY SINE Alu -18 293 2 189 264 92 35 chr1 9845451 9845538 -272348126 + L2 LINE L2 3213 3304 -9 251 196 20 0 chr1 9845851 9845902 -272347762 + L2 LINE L2 3262 3313 0 304 260 29 58 chr1 9846398 9846502 -272347162 - L1M4 LINE L1 -2973 3173 3073 2316 84 3 0 chr1 9847144 9847430 -272346234 - AluY SINE Alu -24 287 1 2257 103 3 13 chr1 9847857 9848169 -272345495 - AluSc SINE Alu 0 309 1 225 211 0 0 chr1 9849255 9849307 -272344357 + A-rich Low_complexity Low_complexity 1 52 0 375 23 0 0 chr1 9849329 9849373 -272344291 + (TG)n Simple_repeat Simple_repeat 1 44 0 1211 156 8 181 chr1 9854951 9855310 -272338354 - AluJb SINE Alu -5 297 1 2041 144 3 25 chr1 9855325 9855644 -272338020 - AluJb SINE Alu 0 312 1 334 256 179 89 chr1 9856113 9856426 -272337238 - HAL1 LINE L1 -1292 1215 875 344 286 70 41 chr1 9856695 9856866 -272336798 - MIR SINE MIR -50 212 37 560 264 130 13 chr1 9857489 9857720 -272335944 + L3 LINE CR1 1279 1536 -41 1983 143 0 0 chr1 9857869 9858162 -272335502 - AluSg SINE Alu -17 293 1 2145 95 3 0 chr1 9858164 9858458 -272335206 - AluY SINE Alu -16 295 1 1801 124 11 0 chr1 9858460 9858725 -272334939 - AluSx SINE Alu -11 301 34 1594 97 8 53 chr1 9858830 9859077 -272334587 - MER46A DNA MER2_type 0 236 1 2119 119 7 3 chr1 9859170 9859473 -272334191 + AluSx SINE Alu 1 304 -8 2294 90 3 0 chr1 9859479 9859780 -272333884 + AluSc SINE Alu 1 302 -7 1808 156 19 10 chr1 9859905 9860213 -272333451 - AluSx SINE Alu -1 311 1 23 33 0 0 chr1 9863898 9863928 -272329736 + AT_rich Low_complexity Low_complexity 1 30 0 294 346 6 13 chr1 9866596 9866752 -272326912 + CT-rich Low_complexity Low_complexity 1 155 0 210 143 0 0 chr1 9868019 9868054 -272325610 + (TG)n Simple_repeat Simple_repeat 1 35 0 640 276 51 70 chr1 9870236 9870548 -272323116 - L2 LINE L2 -8 3305 3000 27 0 0 0 chr1 9871257 9871284 -272322380 + AT_rich Low_complexity Low_complexity 1 27 0 337 283 10 30 chr1 9873424 9873523 -272320141 - MER81 DNA DNA 0 114 18 394 283 118 56 chr1 9874336 9874727 -272318937 - L1MC4a LINE L1 -297 5824 5759 2186 107 0 0 chr1 9874727 9875036 -272318628 + AluY SINE Alu 1 309 -2 1729 131 48 14 chr1 9875160 9875475 -272318189 - AluJo SINE Alu 0 336 12 2003 134 0 7 chr1 9875490 9875796 -272317868 - AluSx SINE Alu -8 304 1 509 230 139 24 chr1 9876279 9876444 -272317220 + MIR SINE MIR 50 233 -29 657 278 129 93 chr1 9876536 9877244 -272316420 - L2 LINE L2 0 3272 2508 1630 170 0 0 chr1 9877244 9877515 -272316149 - AluJo SINE Alu -15 297 27 657 278 129 93 chr1 9877515 9877810 -272315854 - L2 LINE L2 -764 2508 2225 22 0 0 0 chr1 9880692 9880714 -272312950 + AT_rich Low_complexity Low_complexity 1 22 0 36 0 0 0 chr1 9880770 9880806 -272312858 + AT_rich Low_complexity Low_complexity 1 36 0 23 0 0 0 chr1 9880906 9880929 -272312735 + AT_rich Low_complexity Low_complexity 1 23 0 1660 170 0 0 chr1 9881811 9882128 -272311536 + AluJo SINE Alu 1 317 0 2099 97 3 7 chr1 9883254 9883554 -272310110 - AluSg SINE Alu -11 299 1 1622 139 10 17 chr1 9883929 9884217 -272309447 + AluSx SINE Alu 1 286 -26 935 137 18 36 chr1 9884366 9884534 -272309130 + FRAM SINE Alu 1 165 -1 2099 125 0 3 chr1 9884954 9885267 -272308397 - AluSx SINE Alu 0 312 1 2088 193 68 45 chr1 9885268 9885349 -272308315 + L1ME1 LINE L1 5580 5658 -676 1557 142 56 8 chr1 9885349 9885617 -272308047 + AluSg SINE Alu 1 281 -29 2088 193 68 45 chr1 9885617 9886121 -272307543 + L1ME1 LINE L1 5658 6334 0 928 182 0 6 chr1 9886163 9886328 -272307336 + FRAM SINE Alu 1 161 -15 2014 108 3 0 chr1 9886330 9886616 -272307048 + AluSx SINE Alu 1 287 -25 2322 71 0 0 chr1 9886630 9886926 -272306738 + AluSg SINE Alu 1 296 -14 380 305 99 0 chr1 9886945 9887096 -272306568 - Charlie1b DNA MER1_type -211 312 147 2289 73 3 0 chr1 9888029 9888316 -272305348 - AluSq SINE Alu -25 288 1 2027 107 7 0 chr1 9888642 9888966 -272304698 - AluSx SINE Alu 0 326 1 838 132 0 0 chr1 9890018 9890147 -272303517 - AluSp/q SINE Alu -12 301 173 1875 112 0 14 chr1 9890698 9890984 -272302680 - AluSx SINE Alu -19 293 12 701 188 0 16 chr1 9891009 9891137 -272302527 - FLAM_C SINE Alu -16 127 2 343 258 62 56 chr1 9891137 9891281 -272302383 - L1M4 LINE L1 -6376 479 23 2005 77 26 4 chr1 9891552 9891824 -272301840 + AluSq SINE Alu 14 291 -22 933 151 6 67 chr1 9891831 9892010 -272301654 + AluSg/x SINE Alu 130 297 -15 227 217 14 72 chr1 9892243 9892312 -272301352 - MIR SINE MIR -124 84 20 319 226 105 65 chr1 9893282 9893406 -272300258 - FLAM_A SINE Alu -4 129 1 189 0 0 0 chr1 9893409 9893430 -272300234 + (T)n Simple_repeat Simple_repeat 1 21 0 1796 117 44 11 chr1 9893562 9893835 -272299829 - AluSx SINE Alu -30 282 1 1428 162 21 0 chr1 9893841 9894105 -272299559 - AluJo SINE Alu 0 308 40 241 197 38 29 chr1 9894105 9894230 -272299434 - L1ME LINE L1 -277 5887 5757 1061 218 0 25 chr1 9894231 9894511 -272299153 - AluJb SINE Alu -13 299 27 2001 122 0 0 chr1 9894547 9894841 -272298823 - AluSx SINE Alu -18 294 1 2300 60 10 3 chr1 9894880 9895181 -272298483 + AluY SINE Alu 1 303 -8 2321 58 3 22 chr1 9895311 9895623 -272298041 + AluSp SINE Alu 1 306 -7 968 88 15 0 chr1 9895679 9895816 -272297848 + AluSp/q SINE Alu 165 303 -10 457 276 0 24 chr1 9895845 9895968 -272297696 + MSTB LTR MaLR 208 327 -99 906 114 0 0 chr1 9895973 9896104 -272297560 - AluSg1 SINE Alu -178 131 1 278 103 0 0 chr1 9896104 9896143 -272297521 + MSTB LTR MaLR 388 426 0 2260 91 0 7 chr1 9896203 9896510 -272297154 + AluY SINE Alu 1 305 -6 687 106 19 10 chr1 9896623 9896727 -272296937 + AluSq/x SINE Alu 29 133 -180 2201 104 0 7 chr1 9897672 9897981 -272295683 - AluSx SINE Alu -5 307 1 902 181 71 16 chr1 9898012 9898194 -272295470 + AluJo SINE Alu 86 277 -35 22 0 0 0 chr1 9898196 9898218 -272295446 + AT_rich Low_complexity Low_complexity 1 22 0 1662 104 0 4 chr1 9898789 9899019 -272294645 + AluSx SINE Alu 1 229 -83 1831 104 0 0 chr1 9899422 9899681 -272293983 - AluY SINE Alu -12 299 41 914 231 124 43 chr1 9899716 9900028 -272293636 + L1MEc LINE L1 1836 2121 -4275 2027 121 7 3 chr1 9900028 9900333 -272293331 + AluSx SINE Alu 1 306 -6 914 231 124 43 chr1 9900333 9900553 -272293111 + L1MEc LINE L1 2121 2411 -3985 22 0 0 0 chr1 9901031 9901053 -272292611 + AT_rich Low_complexity Low_complexity 1 22 0 23 0 0 0 chr1 9901185 9901208 -272292456 + AT_rich Low_complexity Low_complexity 1 23 0 2142 112 0 3 chr1 9901505 9901810 -272291854 - AluSx SINE Alu -8 304 1 1672 171 3 7 chr1 9902140 9902427 -272291237 - AluJo SINE Alu -22 290 5 1749 162 13 19 chr1 9902707 9903021 -272290643 - AluJb SINE Alu 0 312 1 534 222 139 0 chr1 9903725 9903869 -272289795 - MIR SINE MIR -96 166 3 2122 114 3 0 chr1 9904516 9904815 -272288849 - AluSp SINE Alu -13 300 1 602 204 39 73 chr1 9904815 9904902 -272288762 - L1M4b LINE L1 -4539 2418 2330 1226 181 102 8 chr1 9904902 9905167 -272288497 - AluJo SINE Alu -22 290 1 602 204 39 73 chr1 9905167 9905285 -272288379 - L1M4b LINE L1 -4627 2330 2220 1912 150 10 3 chr1 9905295 9905601 -272288063 - AluJb SINE Alu -4 308 1 1636 168 39 39 chr1 9905608 9905918 -272287746 - AluJo SINE Alu 0 312 3 2398 82 3 7 chr1 9906103 9906407 -272287257 - AluSq SINE Alu -10 303 1 2408 114 0 0 chr1 9906424 9906732 -272286932 - AluSx SINE Alu -4 308 1 2443 80 3 0 chr1 9906999 9907301 -272286363 + AluY SINE Alu 1 303 -8 2081 84 23 43 chr1 9907316 9907615 -272286049 + AluSp SINE Alu 3 295 -18 2162 108 0 10 chr1 9907626 9907931 -272285733 - AluSq SINE Alu 0 313 12 722 188 0 16 chr1 9907956 9908084 -272285580 - FLAM_C SINE Alu -16 127 2 349 258 62 56 chr1 9908084 9908228 -272285436 - L1M4b LINE L1 -6376 479 23 2137 77 26 4 chr1 9908499 9908771 -272284893 + AluSq SINE Alu 14 291 -22 1017 151 6 67 chr1 9908778 9908957 -272284707 + AluSg/x SINE Alu 128 295 -15 230 217 14 72 chr1 9909190 9909259 -272284405 - MIR SINE MIR -124 84 20 332 156 0 0 chr1 9910222 9910286 -272283378 - FLAM SINE Alu -4 129 66 1947 145 24 7 chr1 9910346 9910643 -272283021 - AluJo SINE Alu -7 305 4 588 162 0 18 chr1 9910654 9910765 -272282899 - FLAM_A SINE Alu -1 141 33 2496 72 0 3 chr1 9910956 9911261 -272282403 + AluY SINE Alu 1 304 -7 2447 92 0 3 chr1 9911516 9911820 -272281844 - AluSx SINE Alu -9 303 1 826 270 116 3 chr1 9911926 9912263 -272281401 + L2 LINE L2 1532 1906 -1408 628 259 146 0 chr1 9912444 9912602 -272281062 + MER5A DNA MER1_type 9 189 0 2262 73 0 17 chr1 9912648 9912958 -272280706 + AluY SINE Alu 1 305 0 1661 289 116 27 chr1 9913113 9913513 -272280151 + L2 LINE L2 1945 2308 -1005 2114 75 8 4 chr1 9913513 9913779 -272279885 - AluSq SINE Alu -14 299 33 1780 136 4 25 chr1 9913780 9914059 -272279605 - AluJo SINE Alu -23 289 17 1661 289 116 27 chr1 9914059 9914915 -272278749 + L2 LINE L2 2307 3309 -4 2132 121 0 14 chr1 9915089 9915386 -272278278 + AluSq SINE Alu 1 293 -20 2126 100 24 7 chr1 9915391 9915720 -272277944 + AluSg SINE Alu 1 334 0 1396 99 0 0 chr1 9915720 9915901 -272277763 + AluSg/x SINE Alu 126 306 -4 2361 99 0 0 chr1 9917084 9917378 -272276286 - AluSx SINE Alu -16 296 3 2302 110 3 0 chr1 9919847 9920147 -272273517 - AluSg SINE Alu -9 301 1 339 78 0 0 chr1 9920918 9920969 -272272695 + (TG)n Simple_repeat Simple_repeat 2 52 0 2417 84 0 28 chr1 9921701 9922023 -272271641 + AluSq SINE Alu 1 313 0 1913 123 18 4 chr1 9922119 9922420 -272271244 + AluSx SINE Alu 1 305 0 783 222 22 16 chr1 9923834 9924019 -272269645 + MER5A DNA MER1_type 4 189 0 2249 114 0 0 chr1 9924269 9924568 -272269096 + AluSx SINE Alu 1 299 -13 432 227 23 11 chr1 9925013 9925101 -272268563 - L2 LINE L2 -3 3269 3181 1928 109 0 0 chr1 9925101 9925348 -272268316 + AluSx SINE Alu 51 297 -15 688 252 81 33 chr1 9925438 9925594 -272268070 + MIR SINE MIR 33 203 -59 864 186 155 26 chr1 9925594 9925788 -272267876 - MER20B DNA MER1_type 0 219 1 688 252 81 33 chr1 9925788 9925841 -272267823 + MIR SINE MIR 203 252 -10 2366 112 0 0 chr1 9926276 9926580 -272267084 + AluSx SINE Alu 1 304 -8 234 0 0 0 chr1 9927107 9927133 -272266531 + (T)n Simple_repeat Simple_repeat 1 26 0 1171 214 95 18 chr1 9927269 9927605 -272266059 - L1ME1 LINE L1 -297 5869 5508 180 111 0 0 chr1 9927605 9927632 -272266032 + (A)n Simple_repeat Simple_repeat 1 27 0 910 227 38 30 chr1 9927733 9927933 -272265731 + MIR SINE MIR 4 201 -61 1992 112 73 3 chr1 9927933 9928220 -272265444 + AluSg1 SINE Alu 1 307 -2 2276 114 0 0 chr1 9928228 9928525 -272265139 + AluSg SINE Alu 1 297 -13 910 227 38 30 chr1 9928525 9928559 -272265105 + MIR SINE MIR 207 252 -10 432 227 23 11 chr1 9928970 9929058 -272264606 - L2 LINE L2 -3 3269 3181 1928 109 0 0 chr1 9929058 9929305 -272264359 + AluSx SINE Alu 51 297 -15 688 252 81 33 chr1 9929395 9929551 -272264113 + MIR SINE MIR 33 203 -59 864 186 155 26 chr1 9929551 9929745 -272263919 - MER20 DNA MER1_type 0 219 1 688 252 81 33 chr1 9929745 9929798 -272263866 + MIR SINE MIR 203 252 -10 2366 112 0 0 chr1 9930236 9930540 -272263124 + AluSx SINE Alu 1 304 -8 2266 113 27 0 chr1 9931067 9931368 -272262296 - AluSx SINE Alu -3 309 1 246 235 160 28 chr1 9931447 9931558 -272262106 + MIR SINE MIR 21 150 -58 2377 76 0 20 chr1 9931558 9931859 -272261805 + AluY SINE Alu 1 295 -16 246 235 160 28 chr1 9931859 9931871 -272261793 + MIR SINE MIR 150 159 -49 1437 170 22 107 chr1 9931897 9932079 -272261585 - AluJo SINE Alu -11 291 95 1446 188 114 0 chr1 9932079 9932357 -272261307 + AluJb SINE Alu 1 307 0 2165 105 14 0 chr1 9932357 9932482 -272261182 + AluSc SINE Alu 2 124 -185 2199 112 3 3 chr1 9932482 9932785 -272260879 + AluSg SINE Alu 1 303 -7 2165 105 14 0 chr1 9932785 9932944 -272260720 + AluSc SINE Alu 124 290 -19 1437 170 22 107 chr1 9932944 9933077 -272260587 - AluJo SINE Alu -205 97 1 547 294 17 23 chr1 9933077 9933254 -272260410 - L2 LINE L2 -11 3302 3127 183 42 0 0 chr1 9933309 9933333 -272260331 + (GTTTG)n Simple_repeat Simple_repeat 1 24 0 1906 164 0 0 chr1 9933333 9933614 -272260050 - AluJb SINE Alu -31 281 1 2603 62 0 0 chr1 9933655 9933959 -272259705 + AluY SINE Alu 1 304 -7 2425 84 3 0 chr1 9934082 9934379 -272259285 + AluSx SINE Alu 1 298 -14 1951 88 95 4 chr1 9935616 9935879 -272257785 + AluSq SINE Alu 3 289 -24 2404 61 0 14 chr1 9935889 9936186 -272257478 + AluY SINE Alu 1 293 -18 2479 63 7 7 chr1 9936839 9937139 -272256525 + AluY SINE Alu 1 300 -11 2310 98 3 0 chr1 9937219 9937516 -272256148 + AluY SINE Alu 1 298 -13 1728 86 125 16 chr1 9937528 9937784 -272255880 + AluSg1 SINE Alu 10 293 -16 1388 109 16 0 chr1 9937785 9937977 -272255687 - AluSg/x SINE Alu -13 299 105 2260 106 3 7 chr1 9938156 9938459 -272255205 - AluSq SINE Alu -7 306 5 991 181 71 16 chr1 9938496 9938678 -272254986 + AluJo SINE Alu 86 277 -35 23 0 0 0 chr1 9938680 9938703 -272254961 + AT_rich Low_complexity Low_complexity 1 23 0 2142 125 7 3 chr1 9939274 9939571 -272254093 + AluSx SINE Alu 1 298 -14 2203 126 7 0 chr1 9939591 9939893 -272253771 + AluSx SINE Alu 1 304 -8 730 271 268 8 chr1 9940023 9940407 -272253257 - MER20B DNA MER1_type 0 783 300 658 173 0 0 chr1 9940407 9940511 -272253153 - AluJb SINE Alu -207 105 2 182 36 0 36 chr1 9940727 9940755 -272252909 + (TTTTG)n Simple_repeat Simple_repeat 3 29 0 2034 101 4 22 chr1 9940760 9941038 -272252626 - AluSq SINE Alu -40 273 1 1459 138 0 28 chr1 9941062 9941280 -272252384 + AluJo SINE Alu 82 293 -19 240 35 0 0 chr1 9941920 9941949 -272251715 + (T)n Simple_repeat Simple_repeat 1 29 0 325 241 71 35 chr1 9942032 9942173 -272251491 - L3 LINE CR1 -28 1549 1404 2182 126 10 0 chr1 9942285 9942594 -272251070 - AluSx SINE Alu 0 312 1 542 174 0 0 chr1 9942696 9942782 -272250882 - AluSp SINE Alu -96 217 132 1635 173 11 4 chr1 9942782 9943053 -272250611 - AluJo SINE Alu -39 273 1 456 205 71 31 chr1 9943055 9943182 -272250482 + MER104 DNA Tc2 45 176 -4 313 293 178 19 chr1 9943186 9943343 -272250321 - L2 LINE L2 -2116 1198 1017 1800 155 40 10 chr1 9943346 9943643 -272250021 - AluJo SINE Alu -6 306 1 403 202 18 55 chr1 9943865 9943974 -272249690 - MER20B DNA MER1_type -678 105 1 816 191 0 14 chr1 9944337 9944484 -272249180 - FRAM SINE Alu -24 152 8 342 67 0 0 chr1 9944617 9944662 -272249002 + (TTA)n Simple_repeat Simple_repeat 2 46 0 1650 211 0 6 chr1 9944692 9945026 -272248638 - AluJb SINE Alu 0 312 1 2194 107 13 10 chr1 9945035 9945334 -272248330 - AluSx SINE Alu -12 300 1 2446 91 3 0 chr1 9945348 9945655 -272248009 - AluSp SINE Alu -5 308 1 1588 174 11 26 chr1 9945689 9945959 -272247705 - AluJo SINE Alu -46 266 1 755 319 111 11 chr1 9945990 9946341 -272247323 - L2 LINE L2 -28 3285 2900 668 227 78 0 chr1 9946890 9947044 -272246620 + MER21B LTR ERV1 329 494 -369 2171 131 0 16 chr1 9947279 9947591 -272246073 + AluSc SINE Alu 1 307 -2 1248 121 0 32 chr1 9947599 9947789 -272245875 + AluSg/x SINE Alu 127 310 0 574 104 0 0 chr1 9947806 9947883 -272245781 - Alu SINE Alu -231 78 2 2190 104 0 4 chr1 9947927 9948206 -272245458 + AluSx SINE Alu 18 295 -17 372 88 10 0 chr1 9948319 9948381 -272245283 - Alu SINE Alu -14 288 237 22 0 0 0 chr1 9948691 9948713 -272244951 + AT_rich Low_complexity Low_complexity 1 22 0 2408 101 0 0 chr1 9948713 9949021 -272244643 - AluSx SINE Alu -4 308 1 766 181 23 8 chr1 9949021 9949154 -272244510 - AluJo SINE Alu -176 136 2 209 257 188 20 chr1 9949155 9949256 -272244408 + L2 LINE L2 3155 3272 0 2590 63 0 0 chr1 9949945 9950245 -272243419 - AluY SINE Alu -11 300 1 2429 89 3 0 chr1 9950466 9950769 -272242895 + AluSx SINE Alu 1 304 -8 22 0 0 0 chr1 9950780 9950802 -272242862 + AT_rich Low_complexity Low_complexity 1 22 0 23 0 0 0 chr1 9950935 9950958 -272242706 + AT_rich Low_complexity Low_complexity 1 23 0 2291 112 0 3 chr1 9951255 9951560 -272242104 - AluSx SINE Alu -8 304 1 1818 171 3 7 chr1 9951890 9952177 -272241487 - AluJo SINE Alu -22 290 5 1930 167 13 10 chr1 9952461 9952772 -272240892 - AluJb SINE Alu 0 312 1 515 224 147 0 chr1 9953476 9953619 -272240045 - MIR SINE MIR -96 166 3 2551 70 3 0 chr1 9954266 9954566 -272239098 - AluSq SINE Alu -12 301 1 306 23 0 23 chr1 9954892 9954935 -272238729 + (TTTTA)n Simple_repeat Simple_repeat 2 140 0 2165 107 7 0 chr1 9954935 9955216 -272238448 - AluSx SINE Alu -29 283 1 885 116 0 8 chr1 9956267 9956396 -272237268 - AluSg/x SINE Alu -12 298 171 203 159 0 127 chr1 9956808 9956871 -272236793 + T-rich Low_complexity Low_complexity 1 55 0 2477 79 0 0 chr1 9956939 9957242 -272236422 - AluSq SINE Alu -10 303 1 1344 162 93 15 chr1 9957244 9957503 -272236161 - AluJo SINE Alu -21 291 13 421 294 96 14 chr1 9957542 9957760 -272235904 - MARNA DNA Mariner -283 303 68 1478 193 0 0 chr1 9957789 9958038 -272235626 + AluJo SINE Alu 1 249 -63 2311 75 0 0 chr1 9958038 9958349 -272235315 - AluSc SINE Alu 0 311 1 318 183 0 0 chr1 9958387 9958447 -272235217 + AluJo SINE Alu 240 299 -3 2416 69 0 0 chr1 9958594 9958883 -272234781 - AluSg1 SINE Alu -20 289 1 24 0 0 0 chr1 9959069 9959093 -272234571 + AT_rich Low_complexity Low_complexity 1 24 0 384 282 28 66 chr1 9962491 9962704 -272230960 + L2 LINE L2 2482 2686 -628 1808 162 44 0 chr1 9962968 9963142 -272230522 - AluJo SINE Alu -2 310 116 189 0 0 0 chr1 9963142 9963163 -272230501 + (TTTTA)n Simple_repeat Simple_repeat 2 22 0 1808 162 44 0 chr1 9963163 9963285 -272230379 - AluJo SINE Alu -196 116 1 812 279 70 8 chr1 9963356 9963600 -272230064 + MIR SINE MIR 2 260 -2 31 68 0 0 chr1 9963758 9963817 -272229847 + AT_rich Low_complexity Low_complexity 1 59 0 1686 158 82 0 chr1 9963875 9964154 -272229510 - AluJb SINE Alu -10 302 1 1878 184 113 31 chr1 9964191 9964403 -272229261 + Charlie4a DNA MER1_type 21 214 -1747 2368 66 3 3 chr1 9964403 9964691 -272228973 - AluY SINE Alu -23 288 1 1894 102 91 0 chr1 9964693 9964958 -272228706 - AluSc SINE Alu -18 291 3 1878 184 113 31 chr1 9964958 9965193 -272228471 + Charlie4a DNA MER1_type 214 508 0 1840 170 17 3 chr1 9965512 9965812 -272227852 - AluSx SINE Alu -8 304 1 1116 148 0 0 chr1 9966027 9966189 -272227475 + FRAM SINE Alu 1 160 -16 217 319 28 14 chr1 9967646 9967718 -272225946 + L2 LINE L2 3185 3257 -15 1372 117 73 10 chr1 9967962 9968168 -272225496 + MER20 DNA MER1_type 1 219 0 2483 76 0 13 chr1 9968305 9968620 -272225044 + AluSx SINE Alu 2 312 0 860 153 0 29 chr1 9968753 9968890 -272224774 + FLAM_C SINE Alu 1 133 0 571 210 96 48 chr1 9969550 9969717 -272223947 + MER5B DNA MER1_type 1 175 -3 1532 152 4 4 chr1 9969814 9970057 -272223607 - AluJb SINE Alu -69 243 1 306 328 15 38 chr1 9970090 9970221 -272223443 + MIR SINE MIR 80 207 -55 2329 93 3 3 chr1 9971182 9971493 -272222171 - AluSq SINE Alu -2 311 1 1562 157 75 7 chr1 9973000 9973280 -272220384 - AluJb SINE Alu -13 299 1 813 154 0 8 chr1 9974164 9974294 -272219370 - AluSx SINE Alu -2 310 182 812 117 27 0 chr1 9974292 9974403 -272219261 - AluSx SINE Alu -197 115 2 * 366 291 115 7 chr1 9974409 9974557 -272219107 + MIR SINE MIR 98 261 -1 246 186 0 17 chr1 9975621 9975680 -272217984 + L2 LINE L2 3020 3077 -195 2511 55 0 0 chr1 9978521 9978813 -272214851 + AluSg SINE Alu 1 292 -18 923 110 22 44 chr1 9979116 9979252 -272214412 - FLAM_A SINE Alu 0 133 1 203 116 23 23 chr1 9979319 9979362 -272214302 + (CAAA)n Simple_repeat Simple_repeat 2 44 0 2102 125 7 0 chr1 9979416 9979711 -272213953 + AluSq SINE Alu 1 297 -16 1627 175 10 33 chr1 9979722 9980025 -272213639 + AluJo SINE Alu 1 296 -16 2446 74 3 0 chr1 9980798 9981095 -272212569 - AluSg SINE Alu -10 300 3 2419 52 0 3 chr1 9981272 9981558 -272212106 - AluY SINE Alu -26 285 1 369 274 162 11 chr1 9981741 9981920 -272211744 - L3 LINE CR1 -78 1499 1294 258 240 0 27 chr1 9982166 9982241 -272211423 + GA-rich Low_complexity Low_complexity 4 76 0 2280 110 0 3 chr1 9983949 9984257 -272209407 + AluSc SINE Alu 1 307 -2 1690 174 6 34 chr1 9984480 9984801 -272208863 + AluJo SINE Alu 1 312 0 277 354 47 0 chr1 9984925 9985052 -272208612 + MIR SINE MIR 129 261 -1 201 39 0 0 chr1 9986205 9986231 -272207433 + (CAAAA)n Simple_repeat Simple_repeat 2 27 0 866 176 7 0 chr1 9986584 9986732 -272206932 - AluJo SINE Alu -162 150 2 723 193 0 59 chr1 9986750 9986885 -272206779 - AluJb SINE Alu -56 256 130 1751 119 8 26 chr1 9986886 9987154 -272206510 - AluSc SINE Alu 0 309 47 2291 102 3 0 chr1 9987376 9987671 -272205993 + AluSq SINE Alu 1 296 -17 1894 86 100 4 chr1 9988421 9988690 -272204974 - AluSg SINE Alu -15 295 1 2384 94 0 10 chr1 9988693 9989001 -272204663 - AluSq SINE Alu -8 305 1 306 267 69 40 chr1 9989027 9989128 -272204536 + MIR SINE MIR 8 111 -151 983 251 34 0 chr1 9989128 9989383 -272204281 - MLT1D LTR MaLR 0 505 217 2343 98 0 0 chr1 9989416 9989713 -272203951 - AluSx SINE Alu -15 297 1 1714 173 3 23 chr1 9989714 9990014 -272203650 - AluJo SINE Alu -18 294 1 829 154 8 0 chr1 9990016 9990139 -272203525 - AluJo/FLAM SINE Alu -188 124 1 698 202 54 24 chr1 9990146 9990314 -272203350 - MLT1D LTR MaLR -312 193 21 893 124 0 29 chr1 9990352 9990489 -272203175 - AluJb SINE Alu -179 133 1 1113 60 0 0 chr1 9990502 9990636 -272203028 - AluY SINE Alu -9 302 169 1142 220 24 16 chr1 9990745 9991000 -272202664 + AluJo SINE Alu 54 310 -2 920 173 0 0 chr1 9991033 9991166 -272202498 - FLAM_A SINE Alu 0 133 1 2386 83 3 0 chr1 9991232 9991532 -272202132 - AluSx SINE Alu -11 301 1 1828 103 4 8 chr1 9992169 9992421 -272201243 + AluSx SINE Alu 47 297 -15 328 355 10 44 chr1 9992432 9992635 -272201029 - L2 LINE L2 -2697 617 422 376 266 78 35 chr1 9993070 9993382 -272200282 - L1MC5 LINE L1 -1 8041 7720 230 74 0 56 chr1 9993465 9993519 -272200145 - L1MC5 LINE L1 -282 7679 7629 2277 105 0 3 chr1 9994092 9994398 -272199266 + AluSx SINE Alu 1 305 -7 270 0 0 0 chr1 9994590 9994620 -272199044 + (T)n Simple_repeat Simple_repeat 1 30 0 1332 119 0 11 chr1 9994881 9995058 -272198606 - AluSx SINE Alu -137 175 1 1084 164 45 0 chr1 9996533 9996710 -272196954 - MER58A DNA MER1_type 0 224 40 533 136 344 24 chr1 9997011 9997136 -272196528 + FAM SINE Alu 3 167 -8 23 0 0 0 chr1 9997136 9997159 -272196505 + AT_rich Low_complexity Low_complexity 1 23 0 2581 215 40 30 chr1 9997302 9997374 -272196290 + L1ME1 LINE L1 5511 5581 -585 2357 99 0 10 chr1 9997374 9997687 -272195977 - AluSg SINE Alu 0 310 1 2581 215 40 30 chr1 9997687 9998257 -272195407 + L1ME1 LINE L1 5581 6160 -6 2156 98 11 3 chr1 9998505 9998790 -272194874 - AluSq SINE Alu -24 289 3 2209 108 0 7 chr1 9998800 9999097 -272194567 - AluSg SINE Alu -15 295 1 901 237 110 4 chr1 9999330 9999558 -272194106 - MIR SINE MIR 0 262 11 2067 125 0 31 chr1 10001002 10001322 -272192342 + AluSx SINE Alu 1 310 -2 22 35 0 0 chr1 10001352 10001381 -272192283 + AT_rich Low_complexity Low_complexity 1 29 0 297 194 0 0 chr1 10002460 10002522 -272191142 - Alu SINE Alu 0 302 241 801 173 15 0 chr1 10002641 10002774 -272190890 + AluJb SINE Alu 148 282 -30 459 0 0 0 chr1 10002777 10002828 -272190836 + (TAAA)n Simple_repeat Simple_repeat 2 52 0 314 208 0 0 chr1 10002838 10002898 -272190766 + AluJ/monomer SINE Alu 1 45 -263 975 174 6 0 chr1 10002907 10003068 -272190596 + AluJb SINE Alu 147 308 -4 2256 86 0 3 chr1 10003068 10003359 -272190305 + AluSg SINE Alu 1 290 -20 1270 277 20 48 chr1 10003721 10004179 -272189485 - L2 LINE L2 -43 3270 2826 1792 126 68 4 chr1 10004731 10005009 -272188655 - AluSx SINE Alu -3 309 14 299 239 137 58 chr1 10005308 10005513 -272188151 + L1ME LINE L1 5385 5605 -516 1524 177 11 14 chr1 10005580 10005863 -272187801 + AluJo SINE Alu 1 282 -30 702 165 0 9 chr1 10006282 10006391 -272187273 + Tigger3(Golem) DNA MER2_type 1 108 -2921 505 76 51 25 chr1 10006382 10006461 -272187203 + Tigger3(Golem) DNA MER2_type 2278 2358 -671 * 1708 142 4 8 chr1 10006584 10006852 -272186812 - AluJo SINE Alu -45 267 1 366 271 57 8 chr1 10006852 10006974 -272186690 + MIR SINE MIR 48 175 -87 2002 119 17 3 chr1 10007280 10007574 -272186090 - AluSx SINE Alu -14 298 1 1045 232 94 80 chr1 10007757 10008330 -272185334 - MLT1G1 LTR MaLR -14 581 1 588 227 110 0 chr1 10008460 10008623 -272185041 - MIR SINE MIR -67 195 15 275 233 33 0 chr1 10008664 10008724 -272184940 - L2 LINE L2 0 3313 3252 23 54 0 0 chr1 10008779 10008816 -272184848 + AT_rich Low_complexity Low_complexity 1 37 0 1820 130 17 17 chr1 10008849 10009148 -272184516 - AluSx SINE Alu -13 299 1 2191 57 19 0 chr1 10009210 10009472 -272184192 + LTR5 LTR ERVK 1 267 -702 4706 121 81 95 chr1 10009483 10010729 -272182935 - pTR5 LTR ERV1 -143 2295 753 5655 84 6 0 chr1 10010729 10011442 -272182222 + LTR5 LTR ERVK 253 969 0 2239 47 18 11 chr1 10011442 10011716 -272181948 - AluSp SINE Alu -37 276 1 365 250 150 19 chr1 10011804 10011964 -272181700 + MIR SINE MIR 13 193 -69 818 193 23 17 chr1 10012125 10012301 -272181363 - AluJb SINE Alu -10 302 126 2122 127 3 3 chr1 10012336 10012627 -272181037 - AluSx SINE Alu -21 291 1 241 342 54 0 chr1 10012792 10012941 -272180723 - MIR SINE MIR -74 188 32 1837 164 7 7 chr1 10013386 10013690 -272179974 + AluJo SINE Alu 1 304 -8 21 57 0 0 chr1 10014226 10014261 -272179403 + GC_rich Low_complexity Low_complexity 1 35 0 26 0 0 0 chr1 10014481 10014507 -272179157 + GC_rich Low_complexity Low_complexity 1 26 0 448 258 113 42 chr1 10015176 10015389 -272178275 - L1MC4 LINE L1 -6 8036 7809 2383 88 7 0 chr1 10015389 10015694 -272177970 + AluSx SINE Alu 1 307 -5 959 108 31 0 chr1 10016643 10016772 -272176892 - AluSq/x SINE Alu -180 133 1 340 198 159 57 chr1 10016873 10017030 -272176634 + L2 LINE L2 3136 3308 -5 2243 105 0 3 chr1 10018003 10018298 -272175366 - AluSg SINE Alu -16 294 1 1563 158 65 24 chr1 10019535 10019826 -272173838 - AluJo SINE Alu -7 305 3 2392 80 3 3 chr1 10020231 10020532 -272173132 - AluSq SINE Alu -12 301 1 879 85 51 0 chr1 10020532 10020650 -272173014 - AluSq/x SINE Alu -177 136 13 286 103 0 0 chr1 10020650 10020689 -272172975 - Alu SINE Alu -260 39 1 226 204 78 97 chr1 10022683 10022786 -272170878 + L1ME4a LINE L1 5973 6073 -48 1443 191 40 7 chr1 10024129 10024401 -272169263 - AluJb SINE Alu -30 282 2 597 146 0 3 chr1 10024588 10024808 -272168856 + AluJ SINE Alu 1 292 -20 26 30 0 0 chr1 10024911 10024944 -272168720 + AT_rich Low_complexity Low_complexity 1 33 0 517 279 122 13 chr1 10025258 10025487 -272168177 - MIR SINE MIR 0 262 9 204 178 0 0 chr1 10025696 10025741 -272167923 - L2 LINE L2 -5 3308 3264 21 36 0 0 chr1 10026281 10026309 -272167355 + AT_rich Low_complexity Low_complexity 1 28 0 2168 133 0 0 chr1 10026346 10026647 -272167017 + AluSx SINE Alu 1 301 -11 1701 139 100 0 chr1 10026749 10027034 -272166630 + AluSq SINE Alu 1 311 0 237 288 24 16 chr1 10027710 10027835 -272165829 + GA-rich Low_complexity Low_complexity 4 129 0 2357 84 7 0 chr1 10028349 10028646 -272165018 + AluSx SINE Alu 1 299 -13 615 249 62 10 chr1 10028695 10028888 -272164776 + MER106A DNA MER1_type 1 203 -33 2208 96 10 7 chr1 10029019 10029310 -272164354 - AluSq SINE Alu -21 292 1 209 312 32 21 chr1 10029690 10029783 -272163881 + MIR SINE MIR 46 139 -123 2338 95 0 3 chr1 10029906 10030201 -272163463 - AluSg SINE Alu -16 294 1 1112 194 197 13 chr1 10030234 10030544 -272163120 + L1MC4 LINE L1 6757 7123 -919 357 89 0 0 chr1 10030681 10030726 -272162938 - Alu SINE Alu -258 45 1 705 119 68 0 chr1 10030730 10030848 -272162816 + FAM SINE Alu 1 46 -3 823 255 41 28 chr1 10030853 10030948 -272162716 + L1MC4 LINE L1 7130 7222 -820 1797 160 0 25 chr1 10030948 10031267 -272162397 + AluJb SINE Alu 1 311 -1 823 255 41 28 chr1 10031267 10031489 -272162175 + L1MC4 LINE L1 7222 7451 -591 941 199 6 0 chr1 10031502 10031663 -272162001 - AluJb SINE Alu -14 298 137 2399 106 0 0 chr1 10031674 10031976 -272161688 - AluSx SINE Alu -10 302 1 545 247 210 49 chr1 10031976 10032274 -272161390 + L1MC4 LINE L1 7451 7832 -210 2274 111 13 0 chr1 10032274 10032581 -272161083 + AluSx SINE Alu 1 311 -1 545 247 210 49 chr1 10032581 10032687 -272160977 + L1MC4 LINE L1 7832 7920 -122 1880 173 0 0 chr1 10033030 10033342 -272160322 + AluJb SINE Alu 1 312 0 1943 100 48 0 chr1 10033568 10033862 -272159802 + AluSq SINE Alu 1 307 0 2615 60 0 0 chr1 10033900 10034202 -272159462 + AluY SINE Alu 1 302 -9 216 281 49 0 chr1 10034302 10034384 -272159280 - MIR SINE MIR -24 238 153 2006 146 7 7 chr1 10034384 10034693 -272158971 + AluSx SINE Alu 1 309 -3 209 255 0 0 chr1 10034817 10034868 -272158796 - L2 LINE L2 0 3313 3263 1093 292 135 69 chr1 10035084 10036238 -272157426 - L2 LINE L2 -363 2951 1674 2172 110 20 13 chr1 10036238 10036537 -272157127 + AluSx SINE Alu 1 301 -11 1093 292 135 69 chr1 10036537 10036874 -272156790 - L2 LINE L2 -1640 1674 1361 1221 212 0 9 chr1 10037150 10037372 -272156292 + MER58A DNA MER1_type 3 222 -2 898 201 27 5 chr1 10037383 10037567 -272156097 + MER5A DNA MER1_type 1 188 -1 196 303 66 0 chr1 10037598 10037674 -272155990 - L2 LINE L2 -74 3239 3159 668 266 128 14 chr1 10037776 10038104 -272155560 - L2 LINE L2 -300 2972 2590 2271 116 7 0 chr1 10040139 10040449 -272153215 + AluSx SINE Alu 1 312 0 1719 174 26 3 chr1 10040971 10041275 -272152389 - 7SLRNA srpRNA srpRNA 0 320 10 233 215 27 87 chr1 10044592 10044741 -272148923 + A-rich Low_complexity Low_complexity 2 141 0 410 52 0 143 chr1 10046023 10046063 -272147601 + MER41B LTR ERV1 482 507 -128 2247 106 20 0 chr1 10046063 10046365 -272147299 - AluSx SINE Alu -4 308 1 410 52 0 143 chr1 10046365 10046401 -272147263 + MER41B LTR ERV1 507 547 -88 446 237 203 0 chr1 10046577 10046695 -272146969 - FLAM_A SINE Alu 0 142 1 2117 113 0 0 chr1 10047480 10047794 -272145870 - AluSx SINE Alu 0 314 1 21 0 0 0 chr1 10048143 10048164 -272145500 + AT_rich Low_complexity Low_complexity 1 21 0 234 182 0 0 chr1 10048612 10048678 -272144986 + T-rich Low_complexity Low_complexity 1 66 0 988 0 0 0 chr1 10048678 10048783 -272144881 - U6 snRNA snRNA -2 105 1 440 106 0 0 chr1 10048808 10048874 -272144790 - Alu SINE Alu -251 67 2 21 0 0 0 chr1 10050881 10050902 -272142762 + AT_rich Low_complexity Low_complexity 1 21 0 25 0 0 0 chr1 10052861 10052886 -272140778 + AT_rich Low_complexity Low_complexity 1 25 0 1952 134 29 0 chr1 10052886 10053162 -272140502 - AluSx SINE Alu -27 285 2 2281 94 10 3 chr1 10054057 10054355 -272139309 + AluSc SINE Alu 1 300 -9 2378 71 7 7 chr1 10056025 10056320 -272137344 - AluY SINE Alu -16 295 1 1791 83 26 0 chr1 10056874 10057104 -272136560 - AluSc SINE Alu -18 291 56 1182 108 0 6 chr1 10057106 10057273 -272136391 + AluY SINE Alu 139 304 -7 926 118 7 0 chr1 10057453 10057588 -272136076 + L1PA8 LINE L1 6032 6167 -5 198 91 0 0 chr1 10057588 10057621 -272136043 + (TTTAA)n Simple_repeat Simple_repeat 1 33 0 556 251 56 101 chr1 10057696 10057838 -272135826 - L2 LINE L2 0 3313 3166 2051 135 0 0 chr1 10057838 10058147 -272135517 - AluSx SINE Alu 0 309 1 556 251 56 101 chr1 10058147 10058361 -272135303 - L2 LINE L2 -147 3166 2972 24 0 0 0 chr1 10059015 10059039 -272134625 + AT_rich Low_complexity Low_complexity 1 24 0 406 186 0 0 chr1 10059515 10059585 -272134079 + AluJ/FRAM SINE Alu 224 293 -9 1245 153 6 0 chr1 10060325 10060508 -272133156 + AluSg/x SINE Alu 70 253 -57 2361 102 0 0 chr1 10061410 10061704 -272131960 + AluSx SINE Alu 1 294 -18 2193 110 7 19 chr1 10062865 10063036 -272130628 - AluSx SINE Alu -8 304 137 2092 129 10 7 chr1 10063036 10063345 -272130319 - AluSx SINE Alu -2 310 1 2193 110 7 19 chr1 10063345 10063481 -272130183 - AluSx SINE Alu -175 137 1 999 157 7 7 chr1 10063503 10063656 -272130008 - FRAM SINE Alu -23 153 1 2620 52 0 3 chr1 10064517 10064824 -272128840 - AluY SINE Alu -5 306 1 320 286 129 7 chr1 10065046 10065186 -272128478 - L3 LINE CR1 -127 1450 1294 258 240 0 27 chr1 10065432 10065507 -272128157 + GA-rich Low_complexity Low_complexity 4 76 0 2293 110 0 3 chr1 10067215 10067523 -272126141 + AluSc SINE Alu 1 307 -2 1049 177 0 31 chr1 10067746 10067938 -272125726 + AluJo SINE Alu 1 186 -126 1078 153 139 0 chr1 10068046 10068248 -272125416 + AluJo SINE Alu 63 292 -20 653 196 8 23 chr1 10068337 10068470 -272125194 - FLAM_C SINE Alu -1 132 2 2135 112 0 0 chr1 10068479 10068756 -272124908 - AluSx SINE Alu -15 297 21 2227 88 13 13 chr1 10069065 10069370 -272124294 - AluSp SINE Alu -8 305 1 249 277 234 7 chr1 10069906 10070047 -272123617 - MIR SINE MIR -66 196 24 2524 80 0 0 chr1 10070988 10071299 -272122365 - AluY SINE Alu 0 311 1 724 135 35 28 chr1 10071332 10071473 -272122191 + FLAM_C SINE Alu 2 143 0 22 0 0 0 chr1 10071872 10071894 -272121770 + AT_rich Low_complexity Low_complexity 1 22 0 3623 126 34 56 chr1 10072380 10072391 -272121273 + Tigger3(Golem) DNA MER2_type 2386 2396 -632 2228 114 0 19 chr1 10072391 10072708 -272120956 + AluSx SINE Alu 1 311 -1 3623 126 34 56 chr1 10072708 10072773 -272120891 + Tigger3(Golem) DNA MER2_type 2396 2461 -567 2141 112 3 7 chr1 10072773 10073069 -272120595 - AluSq SINE Alu -12 301 7 3623 126 34 56 chr1 10073069 10073648 -272120016 + Tigger3(Golem) DNA MER2_type 2461 3027 -1 1518 142 0 124 chr1 10073709 10073858 -272119806 + AluJb SINE Alu 1 88 -224 2154 112 10 0 chr1 10073858 10074152 -272119512 + AluSx SINE Alu 1 297 -15 1518 142 0 124 chr1 10074152 10074332 -272119332 + AluJb SINE Alu 88 289 -23 21 0 0 0 chr1 10074403 10074424 -272119240 + AT_rich Low_complexity Low_complexity 1 21 0 182 319 83 14 chr1 10074798 10074870 -272118794 + L2 LINE L2 3127 3203 -69 189 175 0 0 chr1 10075328 10075368 -272118296 + (CA)n Simple_repeat Simple_repeat 2 41 0 1922 143 0 4 chr1 10075681 10075961 -272117703 + AluSx SINE Alu 1 279 -33 1091 93 0 70 chr1 10076074 10076246 -272117418 - AluSq SINE Alu -53 260 101 655 138 0 0 chr1 10076300 10076394 -272117270 + AluSg SINE Alu 2 95 -215 188 35 35 0 chr1 10076394 10076423 -272117241 + (CAAA)n Simple_repeat Simple_repeat 2 31 0 2238 110 0 0 chr1 10076515 10076807 -272116857 + AluSx SINE Alu 1 292 -20 30 0 0 0 chr1 10076807 10076837 -272116827 + AT_rich Low_complexity Low_complexity 1 30 0 180 200 0 0 chr1 10076978 10077018 -272116646 + (TA)n Simple_repeat Simple_repeat 1 40 0 1480 171 23 63 chr1 10077418 10077717 -272115947 + AluJb SINE Alu 1 287 -25 241 286 16 0 chr1 10077793 10077856 -272115808 + L2 LINE L2 3234 3297 -16 2079 132 0 3 chr1 10077916 10078219 -272115445 - AluSx SINE Alu -10 302 1 2078 151 0 0 chr1 10078278 10078583 -272115081 + AluSx SINE Alu 1 305 -7 2585 59 0 3 chr1 10078846 10079152 -272114512 - AluY SINE Alu -6 305 1 690 296 37 21 chr1 10080030 10080092 -272113572 - MIR SINE MIR 0 262 203 1836 166 0 7 chr1 10080092 10080388 -272113276 - AluJo SINE Alu -18 294 1 690 296 37 21 chr1 10080388 10080568 -272113096 - MIR SINE MIR -59 203 16 2052 125 0 20 chr1 10080722 10081025 -272112639 + AluSq SINE Alu 1 297 -16 1808 172 0 3 chr1 10081035 10081364 -272112300 + AluJb SINE Alu 1 328 0 2220 102 0 0 chr1 10081407 10081712 -272111952 + AluSx SINE Alu 1 305 0 2157 119 3 0 chr1 10081922 10082216 -272111448 - AluSq SINE Alu -18 295 1 2045 120 10 13 chr1 10082480 10082788 -272110876 - AluSx SINE Alu -5 307 1 1276 214 56 4 chr1 10082844 10083111 -272110553 - AluJo SINE Alu -31 281 1 1203 139 0 0 chr1 10083155 10083327 -272110337 + AluSg/x SINE Alu 124 295 -15 876 163 0 0 chr1 10083560 10083689 -272109975 + FLAM_C SINE Alu 3 131 -12 1852 157 3 7 chr1 10083750 10084049 -272109615 - AluJo SINE Alu -14 298 1 432 245 185 0 chr1 10084829 10084980 -272108684 + L2 LINE L2 2449 2627 -687 1796 178 0 18 chr1 10085168 10085478 -272108186 + AluJb SINE Alu 1 305 0 1940 110 88 25 chr1 10085578 10085895 -272107769 + MER1B DNA MER1_type 1 337 0 197 217 0 67 chr1 10085987 10086047 -272107617 + MIR SINE MIR 120 175 -87 417 238 151 101 chr1 10086101 10086504 -272107160 - L2 LINE L2 0 3313 2784 1850 153 0 14 chr1 10086504 10086798 -272106866 + AluSx SINE Alu 1 290 -22 417 238 151 101 chr1 10086798 10086878 -272106786 - L2 LINE L2 -529 2784 2710 1263 284 152 10 chr1 10087029 10087621 -272106043 - L2 LINE L2 -647 2667 1992 2610 44 0 0 chr1 10088551 10088847 -272104817 + AluY SINE Alu 1 296 -15 2526 71 10 0 chr1 10088851 10089161 -272104503 + AluSp SINE Alu 1 313 0 407 300 71 29 chr1 10089778 10089948 -272103716 + MIR SINE MIR 20 196 -66 251 179 0 18 chr1 10090084 10090140 -272103524 - AluSp/q SINE Alu 0 303 249 2340 90 3 13 chr1 10090147 10090457 -272103207 - AluSx SINE Alu -5 307 1 381 89 0 0 chr1 10090743 10090785 -272102879 + (TC)n Simple_repeat Simple_repeat 2 46 -11 279 0 0 0 chr1 10090785 10090816 -272102848 + (CA)n Simple_repeat Simple_repeat 1 31 0 381 89 0 0 chr1 10090816 10090829 -272102835 + (TC)n Simple_repeat Simple_repeat 45 57 0 321 255 133 0 chr1 10091193 10091291 -272102373 + MIR SINE MIR 80 190 -72 2142 113 0 3 chr1 10091296 10091601 -272102063 - AluSx SINE Alu 0 304 1 1951 139 0 17 chr1 10091995 10092132 -272101532 + AluJb SINE Alu 1 139 -171 2244 98 10 7 chr1 10092132 10092428 -272101236 + AluSx SINE Alu 1 297 -15 1951 139 0 17 chr1 10092428 10092605 -272101059 + AluJb SINE Alu 139 310 0 2424 84 0 0 chr1 10093048 10093345 -272100319 - AluY SINE Alu -14 297 1 1981 169 68 39 chr1 10093530 10093912 -272099752 + MSTB LTR MaLR 1 397 -29 1785 82 0 9 chr1 10093912 10094144 -272099520 + MER30 DNA MER1_type 1 230 0 1981 169 68 39 chr1 10094144 10094175 -272099489 + MSTB LTR MaLR 397 426 0 2341 82 0 0 chr1 10094190 10094502 -272099162 - AluSc SINE Alu 0 312 1 211 172 35 0 chr1 10094536 10094594 -272099070 + A-rich Low_complexity Low_complexity 4 63 0 2060 127 0 3 chr1 10094598 10094913 -272098751 + AluJb SINE Alu 1 314 0 688 262 139 36 chr1 10095039 10095445 -272098219 + MLT1G1 LTR MaLR 1 496 -71 2210 91 20 17 chr1 10095445 10095741 -272097923 - AluSx SINE Alu -15 297 1 688 262 139 36 chr1 10095741 10095791 -272097873 + MLT1G1 LTR MaLR 496 539 -28 240 228 30 30 chr1 10095793 10095894 -272097770 + MLT1G1-int LTR MaLR 1 101 -1270 340 338 31 14 chr1 10095902 10096124 -272097540 + MLT1G1-int LTR MaLR 290 515 -856 28 0 0 0 chr1 10096129 10096157 -272097507 + AT_rich Low_complexity Low_complexity 1 28 0 2370 87 3 0 chr1 10096236 10096536 -272097128 + AluSx SINE Alu 1 301 -11 200 97 65 16 chr1 10096784 10096846 -272096818 + (TTATA)n Simple_repeat Simple_repeat 5 69 0 302 277 8 50 chr1 10096966 10097019 -272096645 + MIR SINE MIR 148 202 -60 2158 109 0 0 chr1 10097019 10097338 -272096326 + AluY SINE Alu 1 319 0 302 277 8 50 chr1 10097338 10097402 -272096262 + MIR SINE MIR 202 261 -1 347 294 37 37 chr1 10097470 10097606 -272096058 - MIR3 SINE MIR -5 203 68 392 308 77 16 chr1 10097785 10097967 -272095697 - MIR SINE MIR -52 210 18 1534 102 9 14 chr1 10098062 10098278 -272095386 + AluSg/x SINE Alu 74 288 -22 2007 108 0 0 chr1 10098902 10099162 -272094502 + AluSc SINE Alu 29 288 -21 2315 106 0 0 chr1 10099454 10099755 -272093909 + AluSg SINE Alu 2 302 -8 2337 96 10 0 chr1 10100091 10100392 -272093272 + AluSx SINE Alu 1 304 -8 1959 106 26 70 chr1 10100401 10100713 -272092951 + AluSx SINE Alu 1 298 -14 288 217 0 0 chr1 10101545 10101614 -272092050 - AluSp/q SINE Alu -2 301 233 1330 178 82 4 chr1 10101746 10101977 -272091687 - AluJo SINE Alu -63 249 1 2570 53 0 37 chr1 10101992 10102313 -272091351 - AluY SINE Alu -2 309 1 251 241 86 0 chr1 10102450 10102508 -272091156 + L2 LINE L2 3208 3270 -2 370 216 198 30 chr1 10102526 10102693 -272090971 - L1M4 LINE L1 -795 5351 5157 240 321 84 65 chr1 10102864 10103185 -272090479 + L2 LINE L2 2328 2654 -660 470 241 153 76 chr1 10103475 10103670 -272089994 + L1MC5 LINE L1 6920 7098 -863 2126 114 0 16 chr1 10103670 10103985 -272089679 - AluSx SINE Alu -2 310 1 470 241 153 76 chr1 10103985 10104069 -272089595 + L1MC5 LINE L1 7098 7174 -787 1469 120 5 0 chr1 10104069 10104285 -272089379 - AluSq SINE Alu -20 293 77 470 241 153 76 chr1 10104285 10104506 -272089158 + L1MC5 LINE L1 7174 7460 -501 26 0 0 0 chr1 10104657 10104683 -272088981 + AT_rich Low_complexity Low_complexity 1 26 0 225 51 0 0 chr1 10104932 10104971 -272088693 + Alu SINE Alu 128 166 0 312 226 21 32 chr1 10104992 10105010 -272088654 + L1MC5 LINE L1 7568 7585 -376 1889 133 7 13 chr1 10105010 10105319 -272088345 - AluJb SINE Alu -5 307 1 312 226 21 32 chr1 10105319 10105393 -272088271 + L1MC5 LINE L1 7585 7659 -302 24 0 0 0 chr1 10105984 10106008 -272087656 + AT_rich Low_complexity Low_complexity 1 24 0 1061 182 107 36 chr1 10106522 10106802 -272086862 - AluJb SINE Alu -2 300 1 2242 158 0 0 chr1 10106829 10107165 -272086499 + MER1B DNA MER1_type 2 337 0 1400 191 14 27 chr1 10107282 10107575 -272086089 + AluJo SINE Alu 1 289 -23 2135 93 0 10 chr1 10107590 10107890 -272085774 + AluSg SINE Alu 1 297 -13 800 178 7 27 chr1 10107912 10108058 -272085606 + AluJb SINE Alu 13 155 -157 2300 91 3 0 chr1 10108162 10108469 -272085195 + AluSc SINE Alu 1 308 -1 1707 121 21 25 chr1 10108719 10109033 -272084631 - AluSg SINE Alu 0 313 1 250 310 109 11 chr1 10109502 10109686 -272083978 + L2 LINE L2 2681 2882 -432 1077 134 0 0 chr1 10110013 10110170 -272083494 + AluSg/x SINE Alu 125 281 -31 2219 112 0 0 chr1 10110607 10110910 -272082754 + AluSx SINE Alu 1 303 -9 2034 140 0 0 chr1 10111042 10111349 -272082315 + AluSq SINE Alu 1 307 -6 557 168 103 52 chr1 10111350 10111505 -272082159 - AluJo SINE Alu -36 276 114 590 0 14 0 chr1 10111563 10111633 -272082031 + (TCTA)n Simple_repeat Simple_repeat 4 74 0 1424 186 10 35 chr1 10111633 10111783 -272081881 - AluJo SINE Alu -29 283 142 2357 67 3 7 chr1 10111783 10112080 -272081584 - AluSp SINE Alu -13 300 5 1424 186 10 35 chr1 10112080 10112219 -272081445 - AluJo SINE Alu -170 142 1 2119 103 7 7 chr1 10112229 10112530 -272081134 - AluSp SINE Alu -12 301 1 2192 92 7 0 chr1 10112532 10112825 -272080839 - AluSp SINE Alu -18 295 1 22 35 0 0 chr1 10113052 10113081 -272080583 + AT_rich Low_complexity Low_complexity 1 29 0 23 0 0 0 chr1 10113139 10113162 -272080502 + AT_rich Low_complexity Low_complexity 1 23 0 2177 112 0 0 chr1 10113284 10113579 -272080085 + AluSx SINE Alu 1 295 -17 910 275 37 68 chr1 10114015 10114388 -272079276 - L2 LINE L2 -5 3308 2948 1750 120 88 0 chr1 10114388 10114671 -272078993 + AluSx SINE Alu 1 308 -4 910 275 37 68 chr1 10114671 10114726 -272078938 - L2 LINE L2 -365 2948 2893 2323 103 0 0 chr1 10114731 10115043 -272078621 + AluSx SINE Alu 1 312 0 762 198 78 12 chr1 10115851 10116018 -272077646 + MIR SINE MIR 69 246 -16 1630 164 17 27 chr1 10116156 10116454 -272077210 + AluJb SINE Alu 1 295 -17 2389 66 3 0 chr1 10116529 10116831 -272076833 + AluSp SINE Alu 1 303 -10 323 23 23 0 chr1 10116831 10116875 -272076789 + (TA)n Simple_repeat Simple_repeat 1 45 0 2166 114 0 0 chr1 10117126 10117416 -272076248 + AluSg SINE Alu 3 292 -18 2307 94 0 0 chr1 10117417 10117725 -272075939 + AluSg SINE Alu 1 308 -2 1289 204 68 11 chr1 10117870 10118150 -272075514 - AluJo SINE Alu -6 296 1 326 238 0 10 chr1 10119080 10119164 -272074500 - L1MC4 LINE L1 -1339 6983 1984 1148 151 0 33 chr1 10119188 10119400 -272074264 - AluJo SINE Alu -103 209 5 32 0 0 0 chr1 10121169 10121201 -272072463 + GC_rich Low_complexity Low_complexity 1 32 0 2118 98 14 0 chr1 10122772 10123068 -272070596 - AluSq SINE Alu -13 300 1 1997 103 3 40 chr1 10123350 10123671 -272069993 + AluSx SINE Alu 3 311 -1 225 235 0 0 chr1 10124021 10124072 -272069592 + L1 LINE L1 4284 4334 -1812 1448 152 78 19 chr1 10124103 10124372 -272069292 - AluJb SINE Alu -27 285 1 1707 164 6 35 chr1 10124419 10124737 -272068927 + AluJo SINE Alu 1 309 -3 2037 96 0 4 chr1 10124771 10125052 -272068612 + AluSx SINE Alu 20 299 -13 381 170 2 5 chr1 10125388 10125484 -272068180 - AluS SINE Alu 0 301 228 216 97 0 0 chr1 10125509 10125540 -272068124 + (ATTG)n Simple_repeat Simple_repeat 2 32 0 1968 104 0 17 chr1 10125542 10125829 -272067835 - AluSx SINE Alu -30 282 1 1787 137 0 65 chr1 10125849 10126040 -272067624 - AluSx SINE Alu -11 301 138 2048 122 3 0 chr1 10126040 10126335 -272067329 + AluSp SINE Alu 1 296 -17 1787 137 0 65 chr1 10126335 10126465 -272067199 - AluSx SINE Alu -174 138 1 1964 110 0 14 chr1 10126523 10126814 -272066850 - AluSg SINE Alu -14 296 10 938 202 0 0 chr1 10126878 10127046 -272066618 + FAM SINE Alu 2 169 -6 1851 154 3 0 chr1 10127071 10127363 -272066301 + AluSq SINE Alu 1 293 -20 1226 142 5 10 chr1 10128119 10128316 -272065348 - AluSx SINE Alu -91 221 26 1629 129 30 113 chr1 10128572 10128661 -272065003 + MER7A DNA MER2_type 2 97 -2941 2175 98 0 0 chr1 10128661 10128948 -272064716 + AluSg SINE Alu 1 287 -23 1629 129 30 113 chr1 10128948 10129229 -272064435 + MER7A DNA MER2_type 97 339 -7 1502 171 33 0 chr1 10130072 10130346 -272063318 + AluJo SINE Alu 1 283 -29 208 267 44 67 chr1 10130412 10130502 -272063162 - MIR SINE MIR -58 204 117 332 231 17 34 chr1 10130504 10130612 -272063052 + L1ME4a LINE L1 5743 5850 -271 798 169 0 22 chr1 10130612 10130748 -272062916 + FLAM_C SINE Alu 1 133 0 1945 125 4 0 chr1 10130968 10131269 -272062395 + AluSx SINE Alu 1 302 0 2038 117 0 19 chr1 10131274 10131410 -272062254 + AluSg SINE Alu 1 138 -172 2244 86 0 3 chr1 10131410 10131701 -272061963 + AluY SINE Alu 1 290 -21 2038 117 0 19 chr1 10131701 10131880 -272061784 + AluSg SINE Alu 138 310 0 388 297 128 7 chr1 10132094 10132242 -272061422 + L1ME4a LINE L1 5874 6039 -82 1328 137 11 48 chr1 10132274 10132544 -272061120 + AluJb SINE Alu 53 312 0 834 152 7 7 chr1 10132880 10133018 -272060646 - AluJo SINE Alu -174 138 1 1996 139 0 0 chr1 10133038 10133341 -272060323 - AluSq SINE Alu -10 303 1 1868 153 0 10 chr1 10133405 10133712 -272059952 - AluJb SINE Alu -4 308 5 187 173 77 58 chr1 10135035 10135087 -272058577 + MIR SINE MIR 33 85 -123 2073 102 0 3 chr1 10135130 10135449 -272058215 - AluSg SINE Alu 0 318 1 2273 92 0 3 chr1 10135556 10135861 -272057803 - AluSq SINE Alu -9 304 1 498 49 0 0 chr1 10135986 10136047 -272057617 - AluY SINE Alu -256 62 2 412 156 46 0 chr1 10136380 10136489 -272057175 + (TG)n Simple_repeat Simple_repeat 2 115 0 852 254 95 13 chr1 10136724 10136956 -272056708 + MLT1G1 LTR MaLR 2 252 -343 356 202 11 34 chr1 10136961 10137050 -272056614 + MLT1H LTR MaLR 463 549 0 999 256 151 32 chr1 10137079 10137557 -272056107 - L2 LINE L2 -19 3294 2779 811 168 0 126 chr1 10137562 10137752 -272055912 - FRAM SINE Alu 0 166 1 1921 118 13 25 chr1 10137775 10138090 -272055574 - AluSq SINE Alu -1 312 2 886 173 6 6 chr1 10138093 10138249 -272055415 - AluJb SINE Alu -22 290 135 2384 92 0 6 chr1 10138255 10138569 -272055095 - AluSx SINE Alu 0 312 1 1349 250 81 40 chr1 10138572 10138760 -272054904 - L2 LINE L2 -608 2706 2527 2168 101 0 0 chr1 10138760 10139056 -272054608 - AluSx SINE Alu -16 296 1 1349 250 81 40 chr1 10139056 10139363 -272054301 - L2 LINE L2 -787 2527 2191 186 123 31 138 chr1 10139362 10139427 -272054237 + MIR3 SINE MIR 123 180 -28 * 221 270 60 30 chr1 10139563 10139604 -272054060 + MIR SINE MIR 159 197 -65 2479 54 0 0 chr1 10139604 10139901 -272053763 + AluY SINE Alu 1 297 -14 221 270 60 30 chr1 10139901 10139959 -272053705 + MIR SINE MIR 197 261 -1 1991 116 3 44 chr1 10140054 10140373 -272053291 + AluSx SINE Alu 1 306 -6 2135 104 0 0 chr1 10141171 10141460 -272052204 - AluSq SINE Alu -24 289 1 363 98 0 0 chr1 10141464 10141525 -272052139 + (TA)n Simple_repeat Simple_repeat 1 61 0 2173 79 10 3 chr1 10141525 10141817 -272051847 - AluSx SINE Alu -18 294 1 465 297 54 7 chr1 10145343 10145491 -272048173 + MIR SINE MIR 16 170 -92 240 167 71 0 chr1 10145742 10145784 -272047880 + MSTB LTR MaLR 382 426 0 3660 166 20 97 chr1 10145784 10145866 -272047798 + L1MB4 LINE L1 5221 5308 -872 2309 89 0 13 chr1 10145866 10146179 -272047485 + AluSc SINE Alu 1 309 0 3660 166 20 97 chr1 10146179 10147128 -272046536 + L1MB4 LINE L1 5308 6180 0 2379 45 0 0 chr1 10147252 10147583 -272046081 - AluY SINE Alu 0 311 1 2313 43 0 0 chr1 10147946 10148226 -272045438 - AluY SINE Alu -31 280 1 189 0 0 0 chr1 10148287 10148308 -272045356 + (A)n Simple_repeat Simple_repeat 1 21 0 2487 59 0 3 chr1 10148909 10149213 -272044451 - AluSq SINE Alu -10 303 1 2134 104 3 0 chr1 10149219 10149518 -272044146 - AluSg SINE Alu -10 300 1 2365 37 7 13 chr1 10150137 10150435 -272043229 - AluY SINE Alu -15 296 1 1650 159 97 0 chr1 10150537 10150827 -272042837 - MER7A DNA MER2_type -29 317 2 772 273 30 0 chr1 10151106 10151304 -272042360 + MIR SINE MIR 6 209 -53 207 100 0 0 chr1 10151720 10151750 -272041914 + (CTTA)n Simple_repeat Simple_repeat 2 31 0 2171 105 0 3 chr1 10151750 10152025 -272041639 - AluSg SINE Alu -27 283 8 749 169 70 7 chr1 10152025 10152167 -272041497 - AluJb SINE Alu -25 287 137 2137 116 20 0 chr1 10153606 10153899 -272039765 - AluSx SINE Alu -13 299 1 2554 68 0 0 chr1 10154712 10155020 -272038644 - AluY SINE Alu -2 309 2 2355 87 7 0 chr1 10155744 10156042 -272037622 + AluSc SINE Alu 2 301 -8 2292 74 11 0 chr1 10156157 10156474 -272037190 - AluSp SINE Alu 0 320 1 2185 119 0 14 chr1 10156491 10156649 -272037015 - AluSx SINE Alu -21 291 137 2284 109 0 10 chr1 10156649 10156660 -272037004 - AluSx SINE Alu -3 309 299 270 0 0 0 chr1 10156660 10156690 -272036974 + (TG)n Simple_repeat Simple_repeat 1 30 0 2284 109 0 10 chr1 10156690 10156990 -272036674 - AluSx SINE Alu -13 299 1 2185 119 0 14 chr1 10156990 10157126 -272036538 - AluSx SINE Alu -175 137 1 1310 269 199 11 chr1 10157691 10158593 -272035071 - L2 LINE L2 -55 3258 2179 287 302 19 99 chr1 10158593 10158809 -272034855 + MER20B DNA MER1_type 19 218 -1 234 222 81 30 chr1 10158810 10158909 -272034755 - L2 LINE L2 -1131 2183 2080 730 200 7 7 chr1 10159118 10159258 -272034406 + FRAM SINE Alu 1 140 -36 2186 124 0 22 chr1 10159258 10159573 -272034091 - AluSx SINE Alu -4 308 1 32 33 0 33 chr1 10159586 10159605 -272034059 + AT_rich Low_complexity Low_complexity 1 19 -40 1508 130 188 0 chr1 10159605 10159868 -272033796 + AluSx SINE Alu 1 308 0 32 33 0 33 chr1 10159868 10159908 -272033756 + AT_rich Low_complexity Low_complexity 19 59 0 2335 85 0 3 chr1 10159949 10160244 -272033420 - AluSc SINE Alu -15 294 1 724 143 0 0 chr1 10160258 10160363 -272033301 - U6 snRNA snRNA -1 106 2 879 179 21 74 chr1 10160364 10160554 -272033110 + AluJo SINE Alu 102 281 -31 32 43 0 0 chr1 10160554 10160600 -272033064 + AT_rich Low_complexity Low_complexity 1 46 0 1399 96 50 29 chr1 10160769 10161009 -272032655 + L1PA16 LINE L1 5922 6166 0 1960 120 0 18 chr1 10161026 10161161 -272032503 + AluSq SINE Alu 3 139 -174 2267 108 0 0 chr1 10161161 10161466 -272032198 + AluY SINE Alu 3 307 -4 1960 120 0 18 chr1 10161466 10161613 -272032051 + AluSq SINE Alu 139 280 -33 544 247 74 11 chr1 10161623 10161813 -272031851 - L1MEd LINE L1 -5016 1103 902 2068 143 7 0 chr1 10161813 10162127 -272031537 - AluSx SINE Alu 0 316 1 2072 109 39 3 chr1 10162151 10162434 -272031230 - AluSx SINE Alu -17 295 3 2088 124 3 0 chr1 10162815 10163098 -272030566 + AluSx SINE Alu 1 284 -28 531 138 0 129 chr1 10163729 10163774 -272029890 - L1MB5 LINE L1 0 6174 6125 243 0 0 0 chr1 10163774 10163801 -272029863 + (TTTTG)n Simple_repeat Simple_repeat 2 28 0 2225 101 0 3 chr1 10163801 10164087 -272029577 - AluSq SINE Alu -28 285 1 531 138 0 129 chr1 10164087 10164156 -272029508 - L1MB5 LINE L1 -47 6127 6074 1898 125 0 83 chr1 10164188 10164500 -272029164 - AluSx SINE Alu -26 286 1 2021 143 3 3 chr1 10164856 10165163 -272028501 + AluSx SINE Alu 1 307 -5 780 124 0 0 chr1 10166142 10166255 -272027409 + AluSg/x SINE Alu 181 293 -17 1242 128 0 15 chr1 10166256 10166451 -272027213 + AluSq SINE Alu 122 313 0 2014 136 14 0 chr1 10167482 10167769 -272025895 - AluJo SINE Alu -21 291 1 2321 41 0 44 chr1 10168726 10169043 -272024621 - AluY SINE Alu 0 304 1 2437 93 0 3 chr1 10169396 10169707 -272023957 - AluSx SINE Alu -2 310 1 2226 90 4 0 chr1 10170635 10170932 -272022732 - AluSc SINE Alu 0 302 5 1529 159 10 68 chr1 10170937 10171113 -272022551 - AluJb SINE Alu -11 301 149 2067 123 3 20 chr1 10171113 10171405 -272022259 + AluSx SINE Alu 1 287 -25 1529 159 10 68 chr1 10171405 10171536 -272022128 - AluJb SINE Alu -163 149 12 1847 160 0 0 chr1 10171916 10172204 -272021460 + AluJb SINE Alu 23 310 -2 2192 113 0 22 chr1 10172382 10172693 -272020971 - AluSx SINE Alu -8 304 1 493 227 19 2 chr1 10172977 10173137 -272020527 + MIR SINE MIR 67 262 0 273 75 0 0 chr1 10173309 10173349 -272020315 + (CA)n Simple_repeat Simple_repeat 2 41 0 189 0 0 0 chr1 10173348 10173369 -272020295 + (TC)n Simple_repeat Simple_repeat 1 21 0 * 427 213 57 41 chr1 10173446 10173568 -272020096 - L1ME4a LINE L1 -22 6099 5976 2103 120 0 13 chr1 10173577 10173878 -272019786 - AluSq SINE Alu -16 297 1 242 272 140 0 chr1 10173885 10173999 -272019665 - L1ME4a LINE L1 -376 5745 5616 239 191 0 0 chr1 10174002 10174044 -272019620 + LTR50 LTR ERVL 7 48 -747 1507 126 39 9 chr1 10174061 10174160 -272019504 - AluSx SINE Alu -75 237 142 2203 99 0 14 chr1 10174160 10174340 -272019324 - AluSc SINE Alu 0 311 135 2319 86 7 0 chr1 10174340 10174632 -272019032 - AluSp SINE Alu -19 294 1 2203 99 0 14 chr1 10174632 10174766 -272018898 - AluSc SINE Alu -176 135 1 1507 126 39 9 chr1 10174766 10174895 -272018769 - AluSx SINE Alu -170 142 1 1820 156 54 0 chr1 10174915 10175210 -272018454 - AluJo SINE Alu -1 311 1 359 275 111 2 chr1 10175308 10175653 -272018011 + LTR50 LTR ERVL 108 654 -141 2114 120 3 3 chr1 10175654 10175954 -272017710 - AluSx SINE Alu -12 300 1 302 280 27 0 chr1 10175956 10176031 -272017633 - L1ME4a LINE L1 -506 5615 5539 1973 96 25 32 chr1 10176173 10176491 -272017173 - AluSg SINE Alu 0 318 3 2606 44 0 7 chr1 10177293 10177590 -272016074 - AluY SINE Alu -16 295 1 2325 101 0 3 chr1 10177592 10177890 -272015774 - AluSc SINE Alu -12 297 1 398 127 0 0 chr1 10178257 10178312 -272015352 - AluSp/q SINE Alu -38 265 211 517 205 137 0 chr1 10178514 10178631 -272015033 - AluJo SINE Alu -178 134 2 2009 144 0 22 chr1 10179531 10179850 -272013814 - AluSx SINE Alu 0 312 1 207 0 0 0 chr1 10179902 10179925 -272013739 + (G)n Simple_repeat Simple_repeat 1 23 0 23 33 0 0 chr1 10180324 10180354 -272013310 + AT_rich Low_complexity Low_complexity 1 30 0 2127 106 0 17 chr1 10180747 10181040 -272012624 - AluSx SINE Alu -19 293 6 2306 114 0 0 chr1 10181775 10182083 -272011581 - AluSx SINE Alu -3 309 2 2314 53 0 11 chr1 10182626 10182910 -272010754 - AluY SINE Alu -2 309 29 681 219 0 71 chr1 10183374 10183484 -272010180 + MER104 DNA Tc2 5 98 -1800 2244 117 3 3 chr1 10183484 10183792 -272009872 - AluSg SINE Alu -2 308 1 681 219 0 71 chr1 10183792 10183864 -272009800 + MER104 DNA Tc2 98 174 -6 301 221 55 63 chr1 10184007 10184134 -272009530 + L2 LINE L2 2934 3059 -254 1087 169 20 55 chr1 10184561 10184815 -272008849 + MLT1D LTR MaLR 1 245 -260 812 169 131 121 chr1 10184795 10184836 -272008828 + MLT1D LTR MaLR 185 224 -281 * 1871 146 14 0 chr1 10184836 10185123 -272008541 - AluSx SINE Alu -21 291 1 1695 146 19 11 chr1 10185126 10185393 -272008271 - AluSx SINE Alu -16 296 28 812 169 131 121 chr1 10185393 10185567 -272008097 + MLT1D LTR MaLR 225 410 -95 2215 90 14 0 chr1 10185567 10185855 -272007809 - AluSx SINE Alu -20 292 1 812 169 131 121 chr1 10185855 10185948 -272007716 + MLT1D LTR MaLR 410 501 -4 1701 183 109 10 chr1 10186669 10187103 -272006561 - MLT1D LTR MaLR -5 462 1 406 332 31 38 chr1 10187133 10187422 -272006242 + ERVL LTR ERVL 1025 1311 -4453 1048 269 86 15 chr1 10187676 10188212 -272005452 + L1M4 LINE L1 2512 3085 -3061 2116 90 29 42 chr1 10188225 10188536 -272005128 + AluSp SINE Alu 1 307 -6 1534 262 158 32 chr1 10188550 10188831 -272004833 + L1M4 LINE L1 3316 3560 -2586 2127 116 27 3 chr1 10188831 10189132 -272004532 - AluSx SINE Alu -4 308 1 1534 262 158 32 chr1 10189132 10189712 -272003952 + L1M4 LINE L1 3560 4285 -1861 2425 88 0 16 chr1 10189712 10189849 -272003815 + AluSx SINE Alu 1 139 -173 2270 102 7 0 chr1 10189849 10190144 -272003520 + AluY SINE Alu 1 297 -14 2425 88 0 16 chr1 10190144 10190323 -272003341 + AluSx SINE Alu 139 312 0 1429 279 59 36 chr1 10190366 10190889 -272002775 + ERVL LTR ERVL 4745 5279 -485 1945 131 3 7 chr1 10191294 10191608 -272002056 - AluSx SINE Alu 0 313 1 1657 161 16 48 chr1 10191744 10192055 -272001609 - AluJo SINE Alu -11 301 1 2190 112 3 0 chr1 10192495 10192790 -272000874 - AluSg SINE Alu -14 296 1 1088 90 0 0 chr1 10192790 10192923 -272000741 - AluSg SINE Alu -177 133 1 781 154 32 0 chr1 10193304 10193427 -272000237 - AluSx SINE Alu -22 290 164 494 141 0 0 chr1 10193425 10193496 -272000168 - AluSx SINE Alu -240 72 2 * 216 288 14 14 chr1 10193720 10193793 -271999871 - MIR SINE MIR -65 143 71 1786 176 3 16 chr1 10193807 10194119 -271999545 - AluJo SINE Alu -2 310 3 1008 114 0 0 chr1 10194124 10194256 -271999408 - FLAM_C SINE Alu -11 132 1 464 280 186 10 chr1 10194425 10194618 -271999046 - MIR SINE MIR 0 262 36 721 242 171 47 chr1 10194956 10195365 -271998299 + L2 LINE L2 2854 3313 0 2037 110 20 37 chr1 10195740 10195912 -271997752 - AluSc SINE Alu -14 295 129 1907 81 16 12 chr1 10195912 10196170 -271997494 - AluSq SINE Alu -10 303 45 2037 110 20 37 chr1 10196170 10196297 -271997367 - AluSc SINE Alu -180 129 1 2227 99 0 26 chr1 10196388 10196690 -271996974 - AluSx SINE Alu -18 294 1 2243 83 0 23 chr1 10197504 10197804 -271995860 + AluSx SINE Alu 1 293 -19 751 184 8 0 chr1 10197953 10198078 -271995586 + FAM SINE Alu 41 166 -19 21 36 0 0 chr1 10198078 10198106 -271995558 + AT_rich Low_complexity Low_complexity 1 28 0 2399 81 3 3 chr1 10198115 10198423 -271995241 + AluY SINE Alu 1 308 -3 1106 264 84 39 chr1 10198503 10199089 -271994575 - L1M4 LINE L1 -1218 4928 4317 2258 109 3 0 chr1 10199150 10199443 -271994221 - AluSx SINE Alu -18 294 1 2013 113 7 4 chr1 10200840 10201114 -271992550 - AluSx SINE Alu -24 288 14 2176 119 13 13 chr1 10201132 10201443 -271992221 - AluSx SINE Alu -1 311 1 24 53 0 0 chr1 10201550 10201588 -271992076 + AT_rich Low_complexity Low_complexity 1 38 0 2038 105 0 90 chr1 10202409 10202501 -271991163 + AluSx SINE Alu 1 100 -212 2382 91 3 3 chr1 10202501 10202810 -271990854 + AluSc SINE Alu 1 309 0 2038 105 0 90 chr1 10202810 10202879 -271990785 + AluSx SINE Alu 100 174 -138 2412 87 3 0 chr1 10202879 10203177 -271990487 + AluSp SINE Alu 2 300 -13 2038 105 0 90 chr1 10203177 10203348 -271990316 + AluSx SINE Alu 174 304 -8 398 242 60 65 chr1 10203549 10203764 -271989900 + MIR SINE MIR 48 261 -1 314 239 56 0 chr1 10203821 10203892 -271989772 + MIR SINE MIR 14 88 -174 * 599 237 46 8 chr1 10203871 10204002 -271989662 + L2 LINE L2 3137 3272 0 244 304 63 0 chr1 10204821 10204900 -271988764 + MIR SINE MIR 32 115 -93 1913 164 0 0 chr1 10205239 10205538 -271988126 + AluSx SINE Alu 1 299 -13 2141 150 3 31 chr1 10205687 10206041 -271987623 + MER7A DNA MER2_type 5 346 0 456 133 0 0 chr1 10206111 10206171 -271987493 + AluS SINE Alu 2 61 -257 1008 118 0 7 chr1 10206274 10206418 -271987246 + AluSg/x SINE Alu 129 271 -41 788 116 124 8 chr1 10206429 10206550 -271987114 + FLAM_C SINE Alu 2 136 -7 2078 138 0 0 chr1 10206842 10207133 -271986531 - AluSx SINE Alu -21 291 1 2518 81 0 3 chr1 10207620 10207930 -271985734 - AluSc SINE Alu 0 309 1 2659 134 57 2 chr1 10208300 10208704 -271984960 + MSTB LTR MaLR 1 426 0 437 252 63 25 chr1 10208771 10208930 -271984734 + HsTC2 DNA Tc2 729 893 -1005 1860 118 0 0 chr1 10209049 10209326 -271984338 + AluSx SINE Alu 35 312 0 1913 138 3 3 chr1 10209736 10210018 -271983646 - AluSx SINE Alu -8 304 23 1004 148 206 18 chr1 10210820 10211043 -271982621 + L1MD3 LINE L1 7730 7994 -1 434 250 60 9 chr1 10211749 10211865 -271981799 - L2 LINE L2 -3 3310 3189 1981 98 0 85 chr1 10212196 10212330 -271981334 + AluSc SINE Alu 1 145 -182 2349 95 10 0 chr1 10212330 10212634 -271981030 + AluSc SINE Alu 1 307 -2 1981 98 0 85 chr1 10212634 10212852 -271980812 + AluSc SINE Alu 145 327 0 2310 99 6 6 chr1 10213541 10213853 -271979811 + AluSx SINE Alu 1 312 0 234 0 0 0 chr1 10214498 10214524 -271979140 + (CA)n Simple_repeat Simple_repeat 2 27 0 2454 68 3 13 chr1 10214694 10215003 -271978661 + AluY SINE Alu 1 306 -5 2251 102 3 0 chr1 10215649 10215943 -271977721 + AluSp SINE Alu 1 295 -18 430 270 17 73 chr1 10216012 10216190 -271977474 + FAM SINE Alu 1 168 -17 304 280 126 40 chr1 10216842 10217017 -271976647 - L2 LINE L2 -297 3016 2827 259 179 39 26 chr1 10217022 10217100 -271976564 + (TG)n Simple_repeat Simple_repeat 1 79 0 385 203 0 13 chr1 10217102 10217181 -271976483 - L2 LINE L2 -504 2810 2733 441 0 0 0 chr1 10217201 10217250 -271976414 + (TG)n Simple_repeat Simple_repeat 2 50 0 239 104 21 0 chr1 10217251 10217299 -271976365 + (GA)n Simple_repeat Simple_repeat 2 50 0 802 221 7 0 chr1 10217299 10217444 -271976220 - FRAM SINE Alu -30 146 1 792 92 151 0 chr1 10217774 10217893 -271975771 - L1PA14 LINE L1 -1 6160 6024 646 98 0 0 chr1 10218297 10218379 -271975285 + AluSx SINE Alu 2 83 -229 2025 104 0 0 chr1 10218379 10218638 -271975026 + AluSx SINE Alu 36 294 -18 185 308 55 22 chr1 10219102 10219193 -271974471 + MIR SINE MIR 159 252 -10 219 69 0 0 chr1 10220119 10220148 -271973516 + (CA)n Simple_repeat Simple_repeat 1 29 0 2359 112 0 0 chr1 10220417 10220730 -271972934 + AluSq SINE Alu 1 313 0 312 178 0 0 chr1 10220946 10221019 -271972645 + (CAT)n Simple_repeat Simple_repeat 2 74 0 1265 131 63 0 chr1 10221253 10221444 -271972220 + AluSx SINE Alu 93 295 -17 305 271 16 49 chr1 10221475 10221506 -271972158 + L1MC4 LINE L1 7924 7954 -88 2393 84 0 3 chr1 10221506 10221804 -271971860 + AluY SINE Alu 1 297 -14 305 271 16 49 chr1 10221804 10221894 -271971770 + L1MC4 LINE L1 7954 8041 -1 181 254 18 36 chr1 10221969 10222024 -271971640 - L2 LINE L2 -71 3201 3148 2198 120 0 16 chr1 10222245 10222562 -271971102 + AluSx SINE Alu 1 312 0 914 43 58 0 chr1 10273304 10273442 -271920222 - MER30 DNA MER1_type -80 150 5 363 248 0 117 chr1 10273616 10273753 -271919911 + L1MCa LINE L1 1996 2116 -4310 236 266 115 35 chr1 10273902 10273927 -271919737 - L2 LINE L2 -154 3118 3096 1795 134 0 0 chr1 10273927 10274181 -271919483 + AluSx SINE Alu 1 254 -58 236 266 115 35 chr1 10274181 10274268 -271919396 - L2 LINE L2 -176 3096 2997 764 248 6 81 chr1 10275697 10275963 -271917701 - MIR SINE MIR 0 262 17 222 261 43 0 chr1 10276039 10276108 -271917556 + L2 LINE L2 3150 3221 -51 324 94 0 0 chr1 10276114 10276167 -271917497 + (TTCA)n Simple_repeat Simple_repeat 4 56 0 222 240 40 40 chr1 10276172 10276247 -271917417 + MIR SINE MIR 74 148 -114 2191 110 3 0 chr1 10276249 10276549 -271917115 + AluSx SINE Alu 2 302 -10 2315 81 7 3 chr1 10276597 10276904 -271916760 + AluSx SINE Alu 4 311 -1 273 221 0 186 chr1 10276904 10277103 -271916561 - Charlie5 DNA MER1_type -62 2550 2389 230 217 22 0 chr1 10277868 10277914 -271915750 - L2 LINE L2 -15 3298 3252 2259 105 3 0 chr1 10277975 10278279 -271915385 + AluSx SINE Alu 1 305 -7 188 250 0 0 chr1 10278281 10278321 -271915343 + L2 LINE L2 3214 3253 -19 574 271 21 7 chr1 10279171 10279315 -271914349 - MIR3 SINE MIR -62 146 1 187 355 66 0 chr1 10279461 10279537 -271914127 + MIR3 SINE MIR 74 154 -54 242 287 0 11 chr1 10279691 10279785 -271913879 - MER113 DNA MER1_type? -394 127 35 288 209 25 106 chr1 10280641 10280817 -271912847 + MIR SINE MIR 11 250 -12 365 300 60 27 chr1 10280961 10281111 -271912553 + MIR3 SINE MIR 40 194 -14 341 287 117 21 chr1 10282565 10282764 -271910900 + MIR3 SINE MIR 5 215 -47 594 202 30 98 chr1 10282848 10283051 -271910613 - MER5A DNA MER1_type 0 189 1 328 325 28 0 chr1 10283408 10283523 -271910141 - MIR3 SINE MIR -39 169 51 1854 120 56 0 chr1 10283617 10283913 -271909751 + AluSx SINE Alu 1 311 0 188 289 145 12 chr1 10284472 10284555 -271909109 - MIR SINE MIR -93 115 22 1796 102 0 0 chr1 10284890 10285147 -271908517 + AluSg SINE Alu 48 304 0 300 290 243 22 chr1 10285277 10285824 -271907840 + L2 LINE L2 2643 3306 -7 645 267 42 42 chr1 10286953 10287193 -271906471 - MIR SINE MIR -19 243 4 2096 129 3 0 chr1 10288873 10289175 -271904489 + AluSx SINE Alu 1 303 -9 196 321 49 12 chr1 10289790 10289871 -271903793 - MIR SINE MIR -77 185 102 2144 117 7 7 chr1 10289958 10290265 -271903399 - AluSx SINE Alu -5 307 1 633 266 59 20 chr1 10290463 10290666 -271902998 - MER20 DNA MER1_type -8 211 1 371 329 99 0 chr1 10290672 10290889 -271902775 + Charlie8 DNA MER1_type 4 228 -2189 1713 167 3 48 chr1 10291082 10291213 -271902451 + AluJo SINE Alu 1 136 -176 1930 120 67 0 chr1 10291213 10291497 -271902167 + AluSq SINE Alu 1 303 -10 1713 167 3 48 chr1 10291497 10291677 -271901987 + AluJo SINE Alu 136 298 -14 251 222 0 0 chr1 10291677 10291722 -271901942 + (CATATA)n Simple_repeat Simple_repeat 3 47 0 205 327 34 93 chr1 10291965 10292170 -271901494 - L2 LINE L2 -4 3268 3076 1796 135 66 0 chr1 10292454 10292743 -271900921 - AluSx SINE Alu -4 308 1 304 329 64 43 chr1 10292745 10292885 -271900779 + L2 LINE L2 3125 3267 -5 428 247 123 26 chr1 10293523 10293677 -271899987 - MIR SINE MIR -21 241 73 2430 71 3 0 chr1 10294105 10294414 -271899250 + AluY SINE Alu 1 310 -1 1181 183 190 15 chr1 10294562 10294825 -271898839 - AluJb SINE Alu -3 309 1 2364 90 0 3 chr1 10295493 10295803 -271897861 + AluSq SINE Alu 1 309 -4 2480 49 0 7 chr1 10296404 10296709 -271896955 - AluY SINE Alu -8 303 1 352 331 47 0 chr1 10298272 10298399 -271895265 - L3 LINE CR1 -11 1566 1434 448 214 10 0 chr1 10299080 10299178 -271894486 + MER81 DNA DNA 1 99 -15 190 278 113 31 chr1 10299404 10299501 -271894163 - MIR3 SINE MIR -5 203 99 1947 115 3 72 chr1 10299958 10300283 -271893381 + AluSx SINE Alu 1 299 -13 22 0 0 0 chr1 10301134 10301156 -271892508 + GC_rich Low_complexity Low_complexity 1 22 0 308 293 13 0 chr1 10301438 10301513 -271892151 + L2 LINE L2 3186 3261 -11 1662 134 69 79 chr1 10301514 10301819 -271891845 + AluSx SINE Alu 1 302 -10 255 226 32 0 chr1 10301867 10301929 -271891735 + CT-rich Low_complexity Low_complexity 2 65 0 379 287 87 7 chr1 10301954 10302016 -271891648 + Charlie8 DNA MER1_type 21 77 -264 2325 106 0 3 chr1 10302016 10302318 -271891346 + AluSx SINE Alu 1 301 -11 379 287 87 7 chr1 10302318 10302405 -271891259 + Charlie8 DNA MER1_type 77 182 -159 698 270 74 5 chr1 10302496 10302685 -271890979 + MIR SINE MIR 51 252 -10 1527 165 0 0 chr1 10302690 10302920 -271890744 + AluJo SINE Alu 1 230 -82 2225 107 0 0 chr1 10302959 10303273 -271890391 + AluSx SINE Alu 1 314 0 2214 119 0 0 chr1 10304489 10304783 -271888881 - AluSx SINE Alu -18 294 1 313 272 119 0 chr1 10304807 10304891 -271888773 - MIR SINE MIR -63 145 55 870 144 0 8 chr1 10305299 10305431 -271888233 + AluJb SINE Alu 6 136 -176 1573 137 144 4 chr1 10305432 10305695 -271887969 + AluSx SINE Alu 3 302 0 335 292 186 40 chr1 10305808 10306034 -271887630 - L2 LINE L2 0 3272 3014 191 83 0 0 chr1 10306057 10306081 -271887583 + L2 LINE L2 3199 3222 -91 523 280 151 5 chr1 10306499 10306717 -271886947 + L2 LINE L2 2500 2749 -565 1962 152 7 0 chr1 10306719 10307015 -271886649 + AluSx SINE Alu 1 298 -14 1750 225 62 18 chr1 10307192 10307687 -271885977 + L2 LINE L2 2787 3307 -6 2269 113 3 6 chr1 10307687 10307998 -271885666 + AluSq SINE Alu 1 310 -3 1106 143 6 6 chr1 10307998 10308173 -271885491 + AluSq SINE Alu 126 300 -13 226 237 151 11 chr1 10308203 10308296 -271885368 + L1ME4a LINE L1 6005 6110 -11 602 295 133 26 chr1 10309584 10309930 -271883734 - L2 LINE L2 0 3313 2931 535 106 11 11 chr1 10310091 10310185 -271883479 + (GGAA)n Simple_repeat Simple_repeat 2 95 0 2315 86 7 3 chr1 10310343 10310633 -271883031 + AluSx SINE Alu 1 291 -21 565 123 40 0 chr1 10310672 10310773 -271882891 - MER5A DNA MER1_type -80 102 4 1485 176 26 40 chr1 10310861 10311163 -271882501 + AluJo SINE Alu 2 299 -13 520 212 33 46 chr1 10311276 10311427 -271882237 + L2 LINE L2 2632 2780 -534 721 236 16 147 chr1 10311438 10311861 -271881803 + L2 LINE L2 2888 3255 -17 355 260 24 79 chr1 10311946 10312073 -271881591 + L2 LINE L2 3141 3260 -12 361 304 84 9 chr1 10312467 10312602 -271881062 + MIR SINE MIR 21 163 -45 1706 220 31 96 chr1 10312651 10312706 -271880958 + MER77 LTR ERV1 84 141 -464 938 99 0 57 chr1 10312706 10312847 -271880817 + FLAM_C SINE Alu 1 133 0 1706 220 31 96 chr1 10312847 10312992 -271880672 + MER77 LTR ERV1 141 294 -311 2260 118 3 0 chr1 10312992 10313297 -271880367 + AluSx SINE Alu 1 306 -6 1706 220 31 96 chr1 10313297 10313488 -271880176 + MER77 LTR ERV1 294 432 -173 6501 117 144 24 chr1 10313488 10314629 -271879035 + MER52C LTR ERV1 1 1278 0 1706 220 31 96 chr1 10314629 10314789 -271878875 + MER77 LTR ERV1 432 601 -4 232 276 29 48 chr1 10314845 10314890 -271878774 + MIR SINE MIR 146 190 -72 2068 137 0 37 chr1 10314890 10315026 -271878638 + AluSx SINE Alu 1 141 -171 2399 88 3 3 chr1 10315026 10315332 -271878332 + AluSg SINE Alu 1 306 -4 2068 137 0 37 chr1 10315332 10315516 -271878148 + AluSx SINE Alu 141 309 -3 232 276 29 48 chr1 10315516 10315575 -271878089 + MIR SINE MIR 190 248 -14 417 241 292 15 chr1 10315610 10315805 -271877859 + MIR SINE MIR 14 262 0 2272 76 0 54 chr1 10316234 10316550 -271877114 - AluSg1 SINE Alu -10 299 1 1807 149 0 14 chr1 10316774 10317055 -271876609 + AluJb SINE Alu 1 277 -35 278 105 0 0 chr1 10317055 10317093 -271876571 - Alu SINE Alu -262 38 1 2117 94 4 0 chr1 10317117 10317406 -271876258 + AluSx SINE Alu 16 305 0 1368 208 83 0 chr1 10317409 10317736 -271875928 - LTR37A LTR ERV1 -55 371 18 2055 133 3 10 chr1 10317789 10318090 -271875574 + AluSq SINE Alu 2 300 -13 511 14 0 56 chr1 10318094 10318165 -271875499 - AluJb SINE Alu -161 151 85 1989 159 0 3 chr1 10318301 10318596 -271875068 + AluJo SINE Alu 2 295 -17 360 281 84 94 chr1 10318615 10318865 -271874799 - L2 LINE L2 -338 2976 2728 2131 123 0 13 chr1 10318865 10319165 -271874499 - AluSx SINE Alu -14 298 3 360 281 84 94 chr1 10319165 10319234 -271874430 - L2 LINE L2 -586 2728 2660 776 271 95 7 chr1 10319329 10319635 -271874029 + L1ME3A LINE L1 5498 5830 -340 2301 109 3 0 chr1 10319639 10319941 -271873723 + AluSq SINE Alu 1 303 -10 1788 178 3 10 chr1 10321040 10321332 -271872332 + AluJo SINE Alu 1 290 -22 231 88 0 0 chr1 10321333 10321367 -271872297 + (GA)n Simple_repeat Simple_repeat 1 34 0 375 92 13 40 chr1 10321368 10321444 -271872220 + (GGAA)n Simple_repeat Simple_repeat 3 76 0 1964 168 0 0 chr1 10322336 10322633 -271871031 + AluJo SINE Alu 1 297 -15 2137 137 3 3 chr1 10322635 10322948 -271870716 + AluSq SINE Alu 1 313 0 1043 114 0 0 chr1 10322962 10323093 -271870571 + AluSg SINE Alu 1 131 -179 1766 179 7 16 chr1 10323470 10323777 -271869887 + AluJo SINE Alu 1 304 -8 594 0 0 0 chr1 10323777 10323843 -271869821 + (GGAA)n Simple_repeat Simple_repeat 3 68 0 207 69 0 0 chr1 10323842 10323871 -271869793 + (CAAGC)n Simple_repeat Simple_repeat 2 30 0 * 1929 130 0 7 chr1 10323875 10324144 -271869520 + AluSx SINE Alu 13 279 -33 186 43 0 0 chr1 10324144 10324167 -271869497 + (GGGGA)n Simple_repeat Simple_repeat 1 23 0 389 309 40 34 chr1 10324248 10324397 -271869267 - MIR SINE MIR -74 188 39 328 303 11 68 chr1 10324542 10324718 -271868946 + L1ME LINE L1 5350 5515 -655 211 270 180 34 chr1 10324804 10324893 -271868771 + MIR SINE MIR 123 224 -38 275 167 154 26 chr1 10324925 10325003 -271868661 + L2 LINE L2 3188 3275 -38 1914 118 0 18 chr1 10325133 10325237 -271868427 + AluSx SINE Alu 33 137 -175 2280 101 0 7 chr1 10325237 10325543 -271868121 + AluSx SINE Alu 1 304 -8 1914 118 0 18 chr1 10325543 10325710 -271867954 + AluSx SINE Alu 137 299 -13 1836 139 0 94 chr1 10325712 10326051 -271867613 + AluJb SINE Alu 1 307 -5 1963 112 23 3 chr1 10326077 10326380 -271867284 - AluSg SINE Alu -1 309 1 240 91 0 0 chr1 10326380 10326413 -271867251 - MER58 DNA MER1_type -32 2388 2356 288 221 104 0 chr1 10326425 10326502 -271867162 - MER58 DNA MER1_type -110 231 147 1788 169 27 3 chr1 10326504 10326799 -271866865 - AluSg SINE Alu -8 302 1 651 234 50 0 chr1 10326820 10326961 -271866703 - AluJb SINE Alu -23 289 142 639 85 47 0 chr1 10327061 10327167 -271866497 + Tigger7 DNA MER2_type 412 522 -1965 465 182 0 82 chr1 10327149 10327259 -271866405 + Tigger7 DNA MER2_type 2391 2491 0 * 27 29 0 0 chr1 10327295 10327329 -271866335 + AT_rich Low_complexity Low_complexity 1 34 0 1425 120 37 14 chr1 10327686 10327783 -271865881 - AluJo SINE Alu -91 221 128 297 0 0 0 chr1 10327783 10327816 -271865848 + (TTTG)n Simple_repeat Simple_repeat 4 36 0 1425 120 37 14 chr1 10327816 10327934 -271865730 - AluJo SINE Alu -184 128 1 317 255 142 7 chr1 10327934 10328075 -271865589 - L1ME LINE L1 -429 5692 5533 303 321 42 1 chr1 10328240 10328388 -271865276 + MIR SINE MIR 12 165 -60 199 247 112 11 chr1 10328497 10328586 -271865078 + MIR SINE MIR 165 262 0 367 240 10 30 chr1 10328591 10328691 -271864973 + L1ME4a LINE L1 6014 6111 -10 378 0 0 0 chr1 10329857 10329899 -271863765 + (TG)n Simple_repeat Simple_repeat 1 42 0 186 268 0 18 chr1 10330127 10330183 -271863481 + MIR SINE MIR 93 147 -61 287 234 71 64 chr1 10334803 10334944 -271858720 + MIR3 SINE MIR 22 163 -45 2388 78 0 3 chr1 10338360 10338655 -271855009 + AluSq SINE Alu 1 294 -19 2357 110 0 3 chr1 10338657 10338966 -271854698 + AluSx SINE Alu 1 308 -4 861 89 32 8 chr1 10339074 10339198 -271854466 + AluYb8 SINE Alu 1 127 -191 2487 92 0 0 chr1 10339202 10339507 -271854157 + AluSq SINE Alu 1 305 -8 250 279 195 68 chr1 10342244 10342576 -271851088 - L2 LINE L2 -1 3271 2882 1490 169 50 29 chr1 10342576 10342855 -271850809 + AluJo SINE Alu 20 304 -8 250 279 195 68 chr1 10342855 10342906 -271850758 - L2 LINE L2 -390 2882 2839 232 311 52 44 chr1 10343194 10343329 -271850335 + L2 LINE L2 3031 3166 -106 185 315 54 71 chr1 10343688 10343872 -271849792 - L2 LINE L2 -219 3053 2873 931 262 98 27 chr1 10344293 10344701 -271848963 - MLT1J LTR MaLR 0 511 75 3499 204 44 40 chr1 10345080 10346207 -271847457 - L1ME2 LINE L1 0 6164 5039 1322 149 0 0 chr1 10346208 10346403 -271847261 - AluJb SINE Alu -30 282 88 757 241 27 45 chr1 10346421 10346602 -271847062 - L1ME2 LINE L1 -1113 5033 4855 2465 94 0 0 chr1 10346602 10346909 -271846755 + AluSq SINE Alu 1 307 -6 757 241 27 45 chr1 10346909 10346947 -271846717 - L1ME2 LINE L1 -1291 4855 4818 25 0 0 0 chr1 10346950 10346975 -271846689 + AT_rich Low_complexity Low_complexity 1 25 0 2516 214 22 5 chr1 10346981 10347536 -271846128 - L1MB8 LINE L1 -14 6164 5601 1151 196 20 87 chr1 10347571 10347828 -271845836 - L1ME1 LINE L1 -3 6443 6215 2326 110 0 0 chr1 10347828 10348136 -271845528 + AluSx SINE Alu 4 311 -1 1151 196 20 87 chr1 10348136 10348236 -271845428 - L1ME1 LINE L1 -231 6215 6110 328 235 0 82 chr1 10348236 10348334 -271845330 - L1MC4 LINE L1 -1339 6703 6614 385 240 39 10 chr1 10348393 10348497 -271845167 - L1ME1 LINE L1 -1024 5402 5296 317 214 0 58 chr1 10348527 10348634 -271845030 - L1MC4 LINE L1 -1339 6983 1996 2328 80 3 38 chr1 10348694 10349007 -271844657 - AluSp SINE Alu -3 310 9 226 167 143 60 chr1 10349010 10349094 -271844570 - MER58C DNA MER1_type -13 202 112 199 200 15 15 chr1 10349081 10349146 -271844518 + CT-rich Low_complexity Low_complexity 3 67 0 * 249 234 47 103 chr1 10349161 10349187 -271844477 - MER58C DNA MER1_type -114 101 75 1949 107 9 79 chr1 10349187 10349505 -271844159 + AluSx SINE Alu 1 296 -16 249 234 47 103 chr1 10349505 10349585 -271844079 - MER58C DNA MER1_type -140 75 1 2386 193 37 19 chr1 10349592 10350544 -271843120 - L1ME LINE L1 -378 5786 4817 605 323 156 20 chr1 10353517 10354016 -271839648 + L1MC/D LINE L1 5254 5820 -1988 1656 150 66 0 chr1 10355057 10355344 -271838320 + 7SLRNA srpRNA srpRNA 1 306 -14 604 256 180 14 chr1 10356977 10357188 -271836476 + MIR SINE MIR 1 246 -16 2190 100 7 0 chr1 10357537 10357836 -271835828 - AluSx SINE Alu -11 301 1 2241 88 0 31 chr1 10358045 10358364 -271835300 + AluY SINE Alu 1 309 -2 1559 168 27 30 chr1 10358391 10358513 -271835151 + AluJb SINE Alu 3 124 -188 369 0 0 0 chr1 10358513 10358554 -271835110 + (TAAAA)n Simple_repeat Simple_repeat 4 44 0 1559 168 27 30 chr1 10358554 10358728 -271834936 + AluJb SINE Alu 124 298 -14 2053 116 0 49 chr1 10358728 10359055 -271834609 + AluSx SINE Alu 1 312 0 22 0 0 0 chr1 10359406 10359428 -271834236 + AT_rich Low_complexity Low_complexity 1 22 0 2285 105 0 0 chr1 10359561 10359866 -271833798 - AluSg SINE Alu -5 305 1 181 174 87 120 chr1 10362151 10362243 -271831421 - MIR3 SINE MIR -16 192 104 643 208 8 0 chr1 10363250 10363370 -271830294 + MIR SINE MIR 56 176 -86 363 270 166 61 chr1 10365139 10365302 -271828362 - L1MC5 LINE L1 -164 7797 7618 439 180 33 107 chr1 10366103 10366145 -271827519 - MER81 DNA DNA 0 114 70 2223 98 10 0 chr1 10366145 10366452 -271827212 - AluSx SINE Alu 0 312 3 439 180 33 107 chr1 10366452 10366531 -271827133 - MER81 DNA DNA -44 70 2 240 149 0 0 chr1 10368020 10368067 -271825597 + (GGA)n Simple_repeat Simple_repeat 2 48 0 282 29 0 0 chr1 10368405 10368440 -271825224 + (CCCCAG)n Simple_repeat Simple_repeat 3 37 0 26 64 0 0 chr1 10374877 10374924 -271818740 + AT_rich Low_complexity Low_complexity 1 47 0 390 288 47 26 chr1 10375048 10375235 -271818429 - L1MC4 LINE L1 -1339 6983 1927 21 57 0 0 chr1 10376840 10376875 -271816789 + GC_rich Low_complexity Low_complexity 1 35 0 189 0 0 0 chr1 10377121 10377142 -271816522 + (CGG)n Simple_repeat Simple_repeat 3 23 0 39 74 0 0 chr1 10377146 10377227 -271816437 + GC_rich Low_complexity Low_complexity 1 81 0 240 35 0 0 chr1 10380190 10380219 -271813445 + (GGA)n Simple_repeat Simple_repeat 3 31 0 272 257 0 0 chr1 10380241 10380315 -271813349 + A-rich Low_complexity Low_complexity 1 74 0 218 273 15 0 chr1 10382335 10382401 -271811263 + L2 LINE L2 3247 3313 0 2402 42 7 0 chr1 10383154 10383441 -271810223 + AluY SINE Alu 1 289 -22 204 214 0 0 chr1 10384997 10385039 -271808625 + G-rich Low_complexity Low_complexity 3 44 0 231 36 0 0 chr1 10387769 10387797 -271805867 + (GGGA)n Simple_repeat Simple_repeat 3 30 0 206 234 0 62 chr1 10387861 10387925 -271805739 + G-rich Low_complexity Low_complexity 5 64 0 37 0 0 0 chr1 10388269 10388306 -271805358 + AT_rich Low_complexity Low_complexity 1 37 0 200 98 0 24 chr1 10389219 10389260 -271804404 + (CGGGGG)n Simple_repeat Simple_repeat 4 43 0 290 311 66 0 chr1 10390243 10390365 -271803299 + L2 LINE L2 3143 3272 0 253 323 40 0 chr1 10390656 10390780 -271802884 - MER3 DNA MER1_type -70 139 11 357 376 44 6 chr1 10394127 10394308 -271799356 + MIR SINE MIR 61 248 -14 276 30 0 0 chr1 10394684 10394717 -271798947 + (CCCCAG)n Simple_repeat Simple_repeat 4 36 0 212 356 0 0 chr1 10395513 10395631 -271798033 + GA-rich Low_complexity Low_complexity 2 119 0 921 126 0 15 chr1 10395903 10396038 -271797626 - FLAM_C SINE Alu 0 133 1 21 57 0 0 chr1 10398606 10398641 -271795023 + AT_rich Low_complexity Low_complexity 1 35 0 349 237 12 0 chr1 10399274 10399443 -271794221 + (CA)n Simple_repeat Simple_repeat 2 172 0 256 230 22 11 chr1 10399459 10399637 -271794027 + (CA)n Simple_repeat Simple_repeat 1 180 0 509 272 17 0 chr1 10399664 10399837 -271793827 + (CA)n Simple_repeat Simple_repeat 1 176 0 184 249 23 6 chr1 10399903 10400080 -271793584 + (CA)n Simple_repeat Simple_repeat 1 180 0 181 241 15 0 chr1 10400134 10400267 -271793397 + (CA)n Simple_repeat Simple_repeat 2 136 0 203 249 11 11 chr1 10400343 10400520 -271793144 + (CA)n Simple_repeat Simple_repeat 2 178 0 223 141 31 0 chr1 10400593 10400657 -271793007 + (CA)n Simple_repeat Simple_repeat 2 67 0 180 0 0 0 chr1 10401870 10401890 -271791774 + (TCTCC)n Simple_repeat Simple_repeat 4 23 0 233 231 0 19 chr1 10402662 10402714 -271790950 + (TCCA)n Simple_repeat Simple_repeat 1 51 0 180 0 0 0 chr1 10402714 10402734 -271790930 + (TCCC)n Simple_repeat Simple_repeat 1 20 0 396 319 139 28 chr1 10403535 10403751 -271789913 + L2 LINE L2 3033 3272 0 250 264 88 48 chr1 10403833 10403958 -271789706 - MIR SINE MIR -119 143 14 210 143 0 0 chr1 10404690 10404725 -271788939 + (CA)n Simple_repeat Simple_repeat 2 36 0 246 314 12 0 chr1 10404759 10404845 -271788819 - L2 LINE L2 -19 3294 3208 201 333 106 24 chr1 10407043 10407166 -271786498 - MIR SINE MIR -81 181 49 211 208 19 0 chr1 10410355 10410408 -271783256 + (CCCG)n Simple_repeat Simple_repeat 1 54 0 204 40 0 0 chr1 10418797 10418822 -271774842 + (TTTC)n Simple_repeat Simple_repeat 2 26 0 2056 121 0 0 chr1 10418824 10419106 -271774558 - AluSx SINE Alu -30 282 1 227 286 218 42 chr1 10419298 10419606 -271774058 + L2 LINE L2 2908 3269 -3 367 177 188 10 chr1 10422482 10422578 -271771086 + MER81 DNA DNA 2 114 0 195 129 0 0 chr1 10426886 10426917 -271766747 + (GGA)n Simple_repeat Simple_repeat 2 32 0 263 308 111 17 chr1 10427750 10427867 -271765797 - L3 LINE CR1 -60 1517 1390 227 100 0 25 chr1 10428968 10429008 -271764656 + (TCCC)n Simple_repeat Simple_repeat 4 42 0 234 0 0 0 chr1 10431403 10431429 -271762235 + (A)n Simple_repeat Simple_repeat 1 26 0 24 77 0 0 chr1 10431905 10431957 -271761707 + GC_rich Low_complexity Low_complexity 1 52 0 180 158 0 0 chr1 10432380 10432418 -271761246 + C-rich Low_complexity Low_complexity 1 38 0 672 119 0 0 chr1 10436781 10436899 -271756765 + (GA)n Simple_repeat Simple_repeat 2 119 0 333 0 0 0 chr1 10436899 10436936 -271756728 + (CA)n Simple_repeat Simple_repeat 2 38 0 305 308 138 71 chr1 10437422 10437542 -271756122 + MIR SINE MIR 22 133 -129 1259 159 9 0 chr1 10437542 10437756 -271755908 + L1MB7 LINE L1 5969 6184 0 305 308 138 71 chr1 10437756 10437859 -271755805 + MIR SINE MIR 133 260 -2 294 73 0 0 chr1 10439764 10439805 -271753859 + (GA)n Simple_repeat Simple_repeat 1 41 0 204 291 182 27 chr1 10440303 10440413 -271753251 - MIR SINE MIR -79 183 57 871 198 0 55 chr1 10440533 10440735 -271752929 - MER58A DNA MER1_type 0 224 34 182 320 16 82 chr1 10444876 10444998 -271748666 - MIR3 SINE MIR -47 161 48 269 329 0 0 chr1 10445577 10445656 -271748008 + GA-rich Low_complexity Low_complexity 4 82 0 235 254 8 49 chr1 10445750 10445872 -271747792 + G-rich Low_complexity Low_complexity 2 118 0 342 156 0 0 chr1 10446409 10446473 -271747191 + GA-rich Low_complexity Low_complexity 2 65 0 213 314 71 0 chr1 10447590 10447660 -271746004 - L2 LINE L2 -10 3262 3188 2172 113 13 0 chr1 10447671 10447971 -271745693 + AluSx SINE Alu 1 304 -8 382 283 32 34 chr1 10447986 10448122 -271745542 + MIR SINE MIR 37 170 -61 285 254 127 36 chr1 10448125 10448235 -271745429 - L2 LINE L2 -5 3308 3189 260 246 0 0 chr1 10448256 10448313 -271745351 + MIR SINE MIR 206 262 0 2174 187 29 55 chr1 10448355 10448882 -271744782 + L1MB5 LINE L1 5626 6166 -17 2141 117 0 0 chr1 10448882 10449172 -271744492 + AluSq SINE Alu 1 290 -23 285 29 0 0 chr1 10449177 10449211 -271744453 + (TAAAA)n Simple_repeat Simple_repeat 3 36 0 2174 187 29 55 chr1 10449211 10449262 -271744402 + L1MB5 LINE L1 6170 6183 0 192 97 0 0 chr1 10450109 10450140 -271743524 + (TTTA)n Simple_repeat Simple_repeat 1 31 0 2226 102 3 7 chr1 10450844 10451149 -271742515 + AluSx SINE Alu 2 305 -7 226 250 75 50 chr1 10451166 10451286 -271742378 - MIR SINE MIR -133 129 7 443 215 0 43 chr1 10452306 10452492 -271741172 + (CACCC)n Simple_repeat Simple_repeat 3 180 0 276 275 0 33 chr1 10452508 10452690 -271740974 + (CACCC)n Simple_repeat Simple_repeat 1 176 0 424 235 0 39 chr1 10452769 10453134 -271740530 + (CACCC)n Simple_repeat Simple_repeat 1 350 0 195 42 0 0 chr1 10454200 10454224 -271739440 + (TTTTC)n Simple_repeat Simple_repeat 2 25 0 282 272 194 7 chr1 10454844 10454991 -271738673 - MIR SINE MIR -59 149 13 24 0 0 0 chr1 10455171 10455195 -271738469 + AT_rich Low_complexity Low_complexity 1 24 0 328 103 0 59 chr1 10455687 10455755 -271737909 - AluSq SINE Alu -1 301 238 1630 125 0 20 chr1 10455788 10456036 -271737628 - AluSq SINE Alu -70 243 1 448 374 27 0 chr1 10456894 10457081 -271736583 + MIR SINE MIR 40 231 -31 262 248 208 0 chr1 10462819 10462920 -271730744 - MIR SINE MIR 0 262 141 231 146 0 0 chr1 10462922 10462963 -271730701 + (CTA)n Simple_repeat Simple_repeat 3 43 0 322 312 39 19 chr1 10462975 10463129 -271730535 - MIR SINE MIR -2 260 104 33 0 0 0 chr1 10465405 10465438 -271728226 + AT_rich Low_complexity Low_complexity 1 33 0 194 133 0 44 chr1 10465905 10465950 -271727714 + (GGGGA)n Simple_repeat Simple_repeat 1 43 0 417 301 102 6 chr1 10466388 10466626 -271727038 + Charlie1a DNA MER1_type 2 268 -1187 2095 104 3 0 chr1 10466626 10466913 -271726751 - AluSx SINE Alu -4 308 21 988 129 0 0 chr1 10466922 10467084 -271726580 - AluSx SINE Alu 0 307 146 563 44 0 0 chr1 10467084 10467152 -271726512 - AluSx SINE Alu -245 68 1 3523 194 72 81 chr1 10467157 10467644 -271726020 + Charlie1a DNA MER1_type 264 754 -2007 2157 114 0 0 chr1 10467644 10467934 -271725730 + AluSg SINE Alu 1 290 -20 3523 194 72 81 chr1 10467934 10468119 -271725545 + Charlie1a DNA MER1_type 754 939 -1822 1870 163 3 6 chr1 10468119 10468432 -271725232 + AluJb SINE Alu 1 312 0 3523 194 72 81 chr1 10468432 10468861 -271724803 + Charlie1a DNA MER1_type 939 1357 -1404 2187 107 13 0 chr1 10468861 10469160 -271724504 + AluSx SINE Alu 1 303 -9 3523 194 72 81 chr1 10469160 10469259 -271724405 + Charlie1a DNA MER1_type 1357 1455 0 402 390 26 40 chr1 10470262 10470534 -271723130 - L2 LINE L2 -5 3267 3000 621 280 109 25 chr1 10470545 10470784 -271722880 + MIR SINE MIR 2 260 -2 228 135 0 0 chr1 10471475 10471512 -271722152 + (GA)n Simple_repeat Simple_repeat 2 38 0 251 325 42 17 chr1 10473234 10473354 -271720310 - MER5A DNA MER1_type -66 123 1 268 271 125 0 chr1 10473359 10473455 -271720209 - MIR SINE MIR -106 156 49 236 358 65 16 chr1 10473499 10473622 -271720042 - L2 LINE L2 -37 3235 3107 495 330 112 32 chr1 10474779 10475064 -271718600 - L2 LINE L2 -1 3312 3005 234 0 0 0 chr1 10475737 10475763 -271717901 + (T)n Simple_repeat Simple_repeat 1 26 0 426 342 38 8 chr1 10476888 10477084 -271716580 - MIR SINE MIR -35 227 25 189 279 44 15 chr1 10477181 10477249 -271716415 + MIR3 SINE MIR 114 183 -25 1870 152 0 29 chr1 10477489 10477805 -271715859 + AluJo SINE Alu 5 311 -1 1858 122 50 0 chr1 10477823 10478101 -271715563 - AluSx SINE Alu -20 292 1 206 121 0 0 chr1 10478599 10478632 -271715032 + (TA)n Simple_repeat Simple_repeat 1 33 0 2266 106 0 3 chr1 10479520 10479823 -271713841 + AluSx SINE Alu 1 302 -10 192 77 0 0 chr1 10480669 10480695 -271712969 + (GGGA)n Simple_repeat Simple_repeat 4 29 0 982 204 11 0 chr1 10482306 10482482 -271711182 + MER45A DNA AcHobo 1 178 0 254 348 30 80 chr1 10482487 10482688 -271710976 + MIR SINE MIR 28 218 -44 180 286 48 16 chr1 10482860 10482923 -271710741 - MIR SINE MIR -117 145 81 2454 47 0 7 chr1 10484636 10484936 -271708728 - AluY SINE Alu -13 298 1 266 314 215 26 chr1 10485232 10485423 -271708241 - MIR SINE MIR -15 247 21 2217 92 0 7 chr1 10486072 10486365 -271707299 - AluSc SINE Alu -18 291 1 1415 157 79 59 chr1 10487081 10487386 -271706278 - AluJo SINE Alu -1 311 1 299 283 29 92 chr1 10487387 10487436 -271706228 + MIR SINE MIR 101 152 -110 2161 100 3 28 chr1 10487436 10487755 -271705909 + AluSx SINE Alu 1 311 -1 299 283 29 92 chr1 10487755 10487878 -271705786 + MIR SINE MIR 152 262 0 242 54 0 27 chr1 10487887 10487924 -271705740 + (TTA)n Simple_repeat Simple_repeat 2 37 0 896 164 10 70 chr1 10489510 10489572 -271704092 - MER53 DNA DNA 0 189 125 2127 101 0 3 chr1 10489572 10489882 -271703782 + AluSq SINE Alu 1 309 0 896 164 10 70 chr1 10489882 10490019 -271703645 - MER53 DNA DNA -64 125 1 762 252 118 50 chr1 10490672 10491233 -271702431 + L2 LINE L2 2710 3309 -4 715 310 139 20 chr1 10494087 10494324 -271699340 + L2 LINE L2 2439 2647 -666 2276 114 0 0 chr1 10494324 10494630 -271699034 + AluSx SINE Alu 1 306 -6 715 310 139 20 chr1 10494630 10495109 -271698555 + L2 LINE L2 2647 3243 -70 2392 100 0 0 chr1 10495139 10495450 -271698214 - AluSx SINE Alu -1 311 1 380 325 140 13 chr1 10497187 10497344 -271696320 - MIR3 SINE MIR -11 197 21 324 322 89 20 chr1 10500112 10500258 -271693406 + MIR3 SINE MIR 28 183 -25 406 338 51 19 chr1 10500443 10500600 -271693064 + L2 LINE L2 3106 3267 -5 2259 110 0 0 chr1 10500681 10500981 -271692683 - AluSx SINE Alu -12 300 1 203 343 14 14 chr1 10501129 10501199 -271692465 - L2 LINE L2 -9 3263 3194 462 364 66 0 chr1 10501259 10501457 -271692207 - MIR SINE MIR -24 238 28 216 0 0 0 chr1 10503023 10503047 -271690617 + (CA)n Simple_repeat Simple_repeat 1 24 0 982 247 18 5 chr1 10503074 10503293 -271690371 + MIR SINE MIR 2 223 -39 208 297 34 109 chr1 10503547 10503722 -271689942 - MIR SINE MIR -30 232 71 2093 116 0 0 chr1 10505018 10505336 -271688328 - AluSx SINE Alu 0 318 1 2277 96 3 0 chr1 10505677 10505979 -271687685 + AluSx SINE Alu 1 303 -9 580 191 17 0 chr1 10506101 10506216 -271687448 + MER3 DNA MER1_type 52 168 -41 2234 93 3 0 chr1 10506345 10506635 -271687029 - AluSx SINE Alu -21 291 1 528 302 61 14 chr1 10506637 10506849 -271686815 - MIR SINE MIR -6 256 35 1850 186 0 0 chr1 10506891 10507203 -271686461 - AluJb SINE Alu 0 312 1 22 0 0 0 chr1 10508132 10508154 -271685510 + AT_rich Low_complexity Low_complexity 1 22 0 348 24 0 0 chr1 10508476 10508517 -271685147 + (TCC)n Simple_repeat Simple_repeat 2 42 0 183 80 0 0 chr1 10509844 10509869 -271683795 + (GGAA)n Simple_repeat Simple_repeat 3 27 0 431 249 13 24 chr1 10513871 10514031 -271679633 + MIR SINE MIR 48 203 -59 414 260 6 17 chr1 10514410 10514591 -271679073 + (CA)n Simple_repeat Simple_repeat 2 180 0 267 294 5 27 chr1 10514710 10514894 -271678770 + (CA)n Simple_repeat Simple_repeat 1 180 0 279 305 6 6 chr1 10515119 10515293 -271678371 + (CA)n Simple_repeat Simple_repeat 1 174 0 198 0 0 0 chr1 10516098 10516120 -271677544 + (T)n Simple_repeat Simple_repeat 1 22 0 406 298 60 36 chr1 10517337 10517505 -271676159 + L1ME4a LINE L1 5893 6064 -57 445 329 119 9 chr1 10517540 10517759 -271675905 + MIR SINE MIR 9 251 -11 502 303 86 0 chr1 10518567 10518742 -271674922 - MIR SINE MIR -26 236 47 357 24 0 0 chr1 10520065 10520107 -271673557 + (TG)n Simple_repeat Simple_repeat 2 43 0 2327 89 3 0 chr1 10520409 10520712 -271672952 + AluSx SINE Alu 1 304 -8 267 341 108 28 chr1 10520738 10520952 -271672712 - MIR SINE MIR 0 262 32 566 246 149 0 chr1 10521152 10521327 -271672337 + MER3 DNA MER1_type 9 209 0 2049 118 0 7 chr1 10521373 10521684 -271671980 - AluSx SINE Alu 0 309 1 328 367 88 20 chr1 10521839 10522136 -271671528 - HAL1 LINE L1 -1182 1325 1009 228 331 149 1 chr1 10522710 10522878 -271670786 - MIR SINE MIR -54 154 3 496 265 88 7 chr1 10523378 10523514 -271670150 - MIR SINE MIR -37 225 79 44