363 120 0 0 chr1_random 0 50 -4321496 + Tigger3(Golem) DNA MER2_type 2876 2925 -104 512 248 143 0 chr1_random 50 183 -4321363 + Tigger3(Golem) DNA MER2_type 2874 3025 -4 1450 298 32 14 chr1_random 223 696 -4320850 - MLT1F LTR MaLR -7 535 28 1817 132 52 85 chr1_random 703 1126 -4320420 - HSMAR2 DNA Mariner -1 1301 893 1324 97 16 162 chr1_random 1248 1557 -4319989 - LTR61 LTR ERV1 -331 264 1 5388 199 5 21 chr1_random 1558 2546 -4319000 - HERV3 LTR ERV1 0 8426 7455 2883 328 46 10 chr1_random 2649 3787 -4317759 - HERV3 LTR ERV1 -4444 3312 2134 11206 100 4 4 chr1_random 3898 5491 -4316055 + L1P LINE L1 2607 4199 -1947 9345 90 34 1 chr1_random 5591 5782 -4315764 + L1P LINE L1 3484 3667 -2479 225 0 0 0 chr1_random 5782 5807 -4315739 + (CAA)n Simple_repeat Simple_repeat 3 27 0 9345 90 34 1 chr1_random 5807 6936 -4314610 + L1P LINE L1 3667 4847 -1299 1992 227 62 47 chr1_random 7038 7572 -4313974 - HERV3 LTR ERV1 -1037 7389 6848 9286 85 2 0 chr1_random 7750 9711 -4311835 - L1PA4 LINE L1 -8 6147 4178 1938 286 11 56 chr1_random 9942 10571 -4310975 + MER77 LTR ERV1 3 603 -2 1114 127 0 0 chr1_random 10593 10750 -4310796 + AluSg/x SINE Alu 156 312 0 338 276 0 0 chr1_random 10848 10953 -4310593 + HERVL68 LTR ERVL 58 162 -2875 415 282 49 14 chr1_random 11021 11163 -4310383 + MER93b LTR ERV1 3 149 -224 478 218 89 146 chr1_random 11196 11461 -4310085 + L1ME3A LINE L1 4838 5064 -1082 1235 209 7 54 chr1_random 11461 11758 -4309788 + AluJo SINE Alu 1 283 -29 478 218 89 146 chr1_random 11758 11984 -4309562 + L1ME3A LINE L1 5064 5301 -845 8187 168 13 13 chr1_random 12088 13596 -4307950 + L1P LINE L1 3368 4875 -1271 318 221 26 0 chr1_random 13596 13673 -4307873 + AluJ/FRAM SINE Alu 224 302 0 6475 98 16 2 chr1_random 13678 14951 -4306595 + L1PA13 LINE L1 4877 6163 0 23 33 0 0 chr1_random 15117 15147 -4306399 + AT_rich Low_complexity Low_complexity 1 30 0 937 264 97 13 chr1_random 15485 15868 -4305678 + L1ME3A LINE L1 5601 6015 -155 239 164 36 0 chr1_random 15903 15958 -4305588 + CT-rich Low_complexity Low_complexity 4 60 0 423 261 0 23 chr1_random 15963 16093 -4305453 + L1ME3A LINE L1 6041 6167 -3 2056 120 24 3 chr1_random 16358 16650 -4304896 - AluSp SINE Alu -15 298 1 9505 213 14 16 chr1_random 16983 20795 -4300751 + L1PA13 LINE L1 1 4044 -2753 2486 65 0 0 chr1_random 22108 22402 -4299144 - AluY SINE Alu -17 294 1 347 239 9 64 chr1_random 23420 23529 -4298017 + L1 LINE L1 3 105 -5850 508 255 0 0 chr1_random 23529 23635 -4297911 + FLAM_C SINE Alu 1 106 -37 267 247 55 14 chr1_random 23635 23708 -4297838 + L1 LINE L1 106 181 -5774 633 286 6 0 chr1_random 23713 23895 -4297651 + L1 LINE L1 4431 4613 -1421 610 326 99 12 chr1_random 23935 24269 -4297277 + L1MB3 LINE L1 459 821 -5134 7435 46 19 2 chr1_random 24372 25491 -4296055 + L1PA7 LINE L1 5017 6152 -2 2162 126 0 0 chr1_random 26730 27039 -4294507 + AluSc SINE Alu 1 309 0 4023 247 79 21 chr1_random 28308 29715 -4291831 + L1MB3 LINE L1 3210 4698 -1336 4048 187 69 36 chr1_random 29874 30947 -4290599 + L1MB3 LINE L1 4968 6070 -1 253 235 113 59 chr1_random 30972 30998 -4290548 - L1M4 LINE L1 -786 5360 5337 1971 134 53 39 chr1_random 30998 31357 -4290189 + THE1B LTR MaLR 1 364 0 253 235 113 59 chr1_random 31357 31551 -4289995 - L1M4 LINE L1 -809 5337 5128 767 209 18 0 chr1_random 31566 31729 -4289817 + L1MB3 LINE L1 6017 6182 -1 1655 155 35 76 chr1_random 31941 32309 -4289237 - THE1B LTR MaLR -7 357 5 10877 119 40 3 chr1_random 32313 33442 -4288104 - THE1B-int LTR MaLR 0 1580 378 2126 134 0 0 chr1_random 33442 33733 -4287813 - AluSq SINE Alu -22 291 1 10877 119 40 3 chr1_random 33733 34126 -4287420 - THE1B-int LTR MaLR -1202 378 1 2071 140 30 38 chr1_random 34126 34491 -4287055 - THE1B LTR MaLR 0 364 3 300 305 71 71 chr1_random 40298 40495 -4281051 + L1 LINE L1 790 986 -5863 765 230 75 0 chr1_random 40630 40856 -4280690 + L1 LINE L1 4910 5152 -1696 1233 198 45 4 chr1_random 41082 41324 -4280222 + AluJo SINE Alu 4 255 -57 826 231 161 18 chr1_random 41471 41813 -4279733 - MER21B LTR ERV1 -57 806 416 1490 213 85 39 chr1_random 41847 42081 -4279465 + MER92B LTR ERV1 33 255 -381 798 81 54 121 chr1_random 42081 42230 -4279316 + MER85 DNA T2_type 1 139 0 1490 213 85 39 chr1_random 42230 42502 -4279044 + MER92B LTR ERV1 255 562 -74 630 0 0 38 chr1_random 42522 42601 -4278945 + L1PA3 LINE L1 6080 6155 0 210 136 0 0 chr1_random 42642 42686 -4278860 + (A)n Simple_repeat Simple_repeat 1 44 0 228 237 21 93 chr1_random 43950 44047 -4277499 + L2 LINE L2 3122 3211 -61 2410 52 10 16 chr1_random 44308 44614 -4276932 + AluY SINE Alu 1 304 -7 953 191 23 45 chr1_random 44780 45000 -4276546 + AluJo SINE Alu 73 287 -25 2383 91 0 0 chr1_random 45005 45314 -4276232 + AluSc SINE Alu 1 309 0 2249 84 3 13 chr1_random 45336 45644 -4275902 + AluSg SINE Alu 1 305 -5 1199 254 49 27 chr1_random 45915 46285 -4275261 + MER93a LTR ERV1 1 378 -24 260 219 83 10 chr1_random 47386 47482 -4274064 - LTR24B LTR ERV1 -6 570 468 * 1653 155 106 6 chr1_random 47449 47787 -4273759 - LTR23 LTR ERV1 -44 401 2 225 174 0 0 chr1_random 47997 48043 -4273503 + (CA)n Simple_repeat Simple_repeat 1 46 0 239 218 10 0 chr1_random 48055 48156 -4273390 + GA-rich Low_complexity Low_complexity 1 102 0 180 97 0 0 chr1_random 48828 48859 -4272687 + (CCCCG)n Simple_repeat Simple_repeat 5 35 0 905 90 0 8 chr1_random 49066 49188 -4272358 - 5S rRNA rRNA 0 121 1 234 0 0 0 chr1_random 49978 50004 -4271542 + (CA)n Simple_repeat Simple_repeat 1 26 0 296 261 6 0 chr1_random 50012 50169 -4271377 + GA-rich Low_complexity Low_complexity 1 158 0 304 226 16 0 chr1_random 50221 50345 -4271201 + GA-rich Low_complexity Low_complexity 2 127 0 207 182 0 0 chr1_random 50952 50996 -4270550 + (CA)n Simple_repeat Simple_repeat 1 44 0 245 238 13 13 chr1_random 51017 51168 -4270378 + GA-rich Low_complexity Low_complexity 1 151 0 2580 136 147 4 chr1_random 52018 52495 -4269051 - LTR61 LTR ERV1 0 595 51 2306 87 17 15 chr1_random 52655 53173 -4268373 - Harlequin LTR ERV1 -4498 2398 1814 * 5137 132 49 50 chr1_random 53163 54581 -4266965 - Harlequin LTR ERV1 -5487 1409 1 889 185 116 32 chr1_random 54581 54966 -4266580 - LTR2B LTR ERV1 0 490 1 21 71 0 0 chr1_random 55013 55055 -4266491 + AT_rich Low_complexity Low_complexity 1 42 0 21 71 0 0 chr1_random 55172 55214 -4266332 + AT_rich Low_complexity Low_complexity 1 42 0 2382 118 12 3 chr1_random 55417 55763 -4265783 - MER9 LTR ERVK -162 349 1 21 57 0 0 chr1_random 56044 56079 -4265467 + AT_rich Low_complexity Low_complexity 1 35 0 310 263 0 21 chr1_random 56766 56861 -4264685 + CT-rich Low_complexity Low_complexity 2 94 0 233 232 0 14 chr1_random 57463 57532 -4264014 + MER57A LTR ERV1 332 399 -4 5490 160 49 18 chr1_random 58119 59867 -4261679 - L1PA13 LINE L1 -1 6162 4345 2407 101 0 0 chr1_random 59867 60174 -4261372 - AluSg SINE Alu -3 307 1 5490 160 49 18 chr1_random 60174 60463 -4261083 - L1PA13 LINE L1 -1818 4345 4066 767 265 0 0 chr1_random 61162 61313 -4260233 + FAM SINE Alu 2 152 -33 624 282 54 48 chr1_random 61365 61698 -4259848 - L1MDb LINE L1 -5905 504 170 1582 238 80 61 chr1_random 62180 62708 -4258838 - L1MB7 LINE L1 -206 5978 5433 1725 164 3 14 chr1_random 62708 63000 -4258546 - AluJb SINE Alu -23 289 1 1582 238 80 61 chr1_random 63000 63144 -4258402 - L1MB7 LINE L1 -751 5433 5293 2319 100 0 0 chr1_random 63165 63466 -4258080 - AluY SINE Alu -10 301 1 894 248 100 38 chr1_random 63509 64009 -4257537 - L1MB7 LINE L1 -1746 4400 3870 351 229 93 0 chr1_random 64030 64148 -4257398 - L1MA10 LINE L1 -8 6326 6198 3766 193 26 63 chr1_random 64327 65333 -4256213 - LTR5 LTR ERVK 0 969 1 314 285 55 11 chr1_random 65333 65508 -4256038 - L1MB7 LINE L1 -2548 3598 3418 432 184 54 6 chr1_random 65984 66152 -4255394 + (TA)n Simple_repeat Simple_repeat 1 176 0 25 31 0 0 chr1_random 67368 67400 -4254146 + AT_rich Low_complexity Low_complexity 1 32 0 16876 57 4 7 chr1_random 67879 69932 -4251614 + HERV17 LTR ERV1 5503 7548 -1078 2451 55 0 0 chr1_random 69922 70214 -4251332 + HERV17 LTR ERV1 8335 8626 0 * 5311 122 29 5 chr1_random 70214 70976 -4250570 + LTR17 LTR ERV1 1 780 0 1052 191 98 20 chr1_random 70981 71227 -4250319 - L1M1 LINE L1 -7286 279 15 29 47 0 0 chr1_random 71822 71865 -4249681 + AT_rich Low_complexity Low_complexity 1 43 0 498 299 29 25 chr1_random 71982 72186 -4249360 - MIR SINE MIR -3 259 55 313 276 23 0 chr1_random 72231 72318 -4249228 - L2 LINE L2 0 3272 3184 883 230 68 14 chr1_random 72557 72779 -4248767 + MER21B LTR ERV1 3 236 -627 4818 152 54 21 chr1_random 72920 73794 -4247752 - MER4D LTR ERV1 0 903 1 1511 220 25 0 chr1_random 74236 74518 -4247028 - AluJo SINE Alu -22 290 2 1211 226 43 72 chr1_random 74518 74964 -4246582 + LTR56 LTR ERV1 13 445 0 861 274 100 26 chr1_random 75512 75596 -4245950 - MER21B LTR ERV1 -55 808 732 938 47 78 16 chr1_random 75596 75701 -4245845 - MER85 DNA T2_type -2 137 21 2136 84 0 4 chr1_random 75701 75975 -4245571 + AluY SINE Alu 24 296 -15 938 47 78 16 chr1_random 75975 75998 -4245548 - MER85 DNA T2_type -118 21 1 861 274 100 26 chr1_random 75998 76292 -4245254 - MER21B LTR ERV1 -131 732 402 1896 117 81 39 chr1_random 76303 76663 -4244883 + THE1C LTR MaLR 1 375 0 213 65 0 0 chr1_random 76736 76767 -4244779 + (CAAAAA)n Simple_repeat Simple_repeat 3 33 0 290 234 178 9 chr1_random 76773 76880 -4244666 + MER92B LTR ERV1 98 222 -414 6337 201 26 9 chr1_random 77369 78615 -4242931 - ERVL LTR ERVL -1428 4336 3070 1028 189 26 5 chr1_random 78615 78806 -4242740 + ERVL LTR ERVL 3596 3790 -1974 1089 211 50 0 chr1_random 78808 79026 -4242520 - ERVL LTR ERVL -2703 3061 2833 311 341 85 12 chr1_random 80183 80347 -4241199 + MER57B LTR ERV1 10 185 -249 298 274 104 0 chr1_random 80493 80628 -4240918 + MER57A LTR ERV1 249 397 -6 294 152 15 30 chr1_random 85121 85187 -4236359 + L1 LINE L1 4714 4778 -1368 2281 104 0 0 chr1_random 85518 85817 -4235729 + AluY SINE Alu 1 299 -12 10557 118 40 23 chr1_random 86008 86657 -4234889 - L1P3 LINE L1 -3585 2876 2240 1390 58 0 0 chr1_random 86657 86831 -4234715 + L1PA5 LINE L1 5981 6154 0 10557 118 40 23 chr1_random 86831 88341 -4233205 - L1P3 LINE L1 -4221 2240 669 423 171 0 0 chr1_random 88341 88411 -4233135 - MER31A LTR ERV1 -389 96 27 1206 279 62 28 chr1_random 89555 90092 -4231454 + L1M4 LINE L1 525 1079 -5463 185 303 0 0 chr1_random 90799 90865 -4230681 + L2 LINE L2 2076 2141 -1173 788 265 96 28 chr1_random 92426 92717 -4228829 - MER58B DNA MER1_type -3 338 28 21 0 0 0 chr1_random 96292 96313 -4225233 + GC_rich Low_complexity Low_complexity 1 21 0 26 0 0 0 chr1_random 98331 98357 -4223189 + AT_rich Low_complexity Low_complexity 1 26 0 2295 78 10 0 chr1_random 98617 98923 -4222623 - AluSg SINE Alu -1 309 1 545 280 154 105 chr1_random 99140 100292 -4221254 - L1MEd LINE L1 -4878 1241 34 1440 241 90 37 chr1_random 100831 101050 -4220496 - L1M4 LINE L1 -2130 4016 3810 735 235 19 12 chr1_random 101050 101212 -4220334 - FRAM SINE Alu -3 163 1 1440 241 90 37 chr1_random 101212 101582 -4219964 - L1M4 LINE L1 -2336 3810 3396 21 36 0 0 chr1_random 103522 103550 -4217996 + AT_rich Low_complexity Low_complexity 1 28 0 233 29 0 29 chr1_random 103918 103953 -4217593 + (CA)n Simple_repeat Simple_repeat 2 35 0 296 263 32 124 chr1_random 104212 104429 -4217117 - MLT1D LTR MaLR -308 197 1 21 0 0 0 chr1_random 104502 104523 -4217023 + AT_rich Low_complexity Low_complexity 1 21 0 4814 183 82 23 chr1_random 105182 108820 -4212726 + L1PB1 LINE L1 6 3911 -2951 15364 146 21 104 chr1_random 108926 109701 -4211845 - L1P LINE L1 -2963 3183 2345 180 0 0 0 chr1_random 109701 109721 -4211825 + (TTG)n Simple_repeat Simple_repeat 2 21 0 15364 146 21 104 chr1_random 109721 112403 -4209143 - L1P LINE L1 -3801 2345 12 667 323 112 34 chr1_random 112419 113040 -4208506 + L2 LINE L2 2623 3311 -2 721 218 0 0 chr1_random 113205 113338 -4208208 - FLAM_A SINE Alu 0 133 1 2091 139 128 28 chr1_random 113810 114199 -4207347 - MSTA LTR MaLR 0 428 1 9267 153 14 36 chr1_random 114204 115795 -4205751 - MSTA-int LTR MaLR -6 1574 19 1133 122 122 15 chr1_random 115799 115995 -4205551 - MSTA LTR MaLR 0 428 212 5617 159 22 86 chr1_random 116101 116541 -4205005 + L1PB1 LINE L1 4768 5235 -1632 1124 162 0 0 chr1_random 116541 116720 -4204826 + AluSp SINE Alu 135 313 0 5617 159 22 86 chr1_random 116720 118372 -4203174 + L1PB1 LINE L1 5235 6867 0 6707 113 31 12 chr1_random 118381 119509 -4202037 + L1MA1 LINE L1 5167 6301 -1 274 239 10 132 chr1_random 119509 119706 -4201840 - MER53 DNA DNA -12 177 5 407 203 0 13 chr1_random 120791 120870 -4200676 + FRAM SINE Alu 72 149 -17 977 221 9 0 chr1_random 121308 121534 -4200012 - L1 LINE L1 -3492 2654 2427 2583 226 75 29 chr1_random 122273 123045 -4198501 + L1PA12 LINE L1 7 1350 -6231 268 186 0 43 chr1_random 123547 123617 -4197929 + L1M2 LINE L1 2450 2516 -4333 1166 198 0 30 chr1_random 123618 123855 -4197691 + AluJo SINE Alu 56 285 -27 234 328 53 15 chr1_random 124494 124625 -4196921 + MIR SINE MIR 73 208 -54 193 309 55 18 chr1_random 124725 124835 -4196711 + MIR3 SINE MIR 78 191 -17 * 234 308 68 14 chr1_random 124750 124896 -4196650 + L2 LINE L2 2644 2797 -517 306 247 3 0 chr1_random 124934 125005 -4196541 + MLT1E LTR MaLR 90 161 -406 1201 247 60 24 chr1_random 125006 125342 -4196204 - MLT1A1 LTR MaLR -17 348 1 495 236 197 54 chr1_random 125486 125809 -4195737 + MLT1E LTR MaLR 169 564 -29 286 321 73 31 chr1_random 125861 126148 -4195398 + L2 LINE L2 2836 3134 -179 1614 276 57 79 chr1_random 126601 127590 -4193956 - PRIMA41-int LTR ERV1 -5315 1486 520 3698 166 45 19 chr1_random 127690 128418 -4193128 - HSMAR2 DNA Mariner -554 748 2 2687 115 22 0 chr1_random 128816 129182 -4192364 + Charlie3 DNA MER1_type 2333 2706 -4 238 333 40 10 chr1_random 129546 129645 -4191901 + MIR SINE MIR 11 112 -150 2342 76 7 0 chr1_random 129654 129957 -4191589 - AluSp SINE Alu -8 305 1 354 261 109 42 chr1_random 129959 130124 -4191422 - L1M4 LINE L1 -843 5303 5128 732 193 37 0 chr1_random 130136 130297 -4191249 + L1MB3 LINE L1 6017 6183 0 2008 131 3 0 chr1_random 130878 131175 -4190371 + AluY SINE Alu 1 298 -13 252 304 123 23 chr1_random 132180 132351 -4189195 - MIR SINE MIR -24 238 51 6612 300 31 16 chr1_random 136999 138602 -4182944 - PRIMA41-int LTR ERV1 -1593 6163 4586 2418 102 30 30 chr1_random 138602 138755 -4182791 + THE1B LTR MaLR 1 153 -211 2116 90 0 0 chr1_random 138755 139045 -4182501 - AluSx SINE Alu 0 312 23 2418 102 30 30 chr1_random 139045 139255 -4182291 + THE1B LTR MaLR 152 364 0 6612 300 31 16 chr1_random 139255 140913 -4180633 - PRIMA41-int LTR ERV1 -3170 4586 2856 743 299 0 0 chr1_random 141164 141338 -4180208 + MER41D LTR ERV1 384 557 0 1454 322 44 50 chr1_random 142293 143058 -4178488 + PRIMA41-int LTR ERV1 1269 2029 -5727 2116 203 25 9 chr1_random 143562 144000 -4177546 - MER31A LTR ERV1 -9 476 32 2043 106 0 23 chr1_random 144500 144801 -4176745 + AluSc SINE Alu 1 294 -15 666 259 46 17 chr1_random 144810 145049 -4176497 + L1M4 LINE L1 825 1070 -5472 679 216 50 28 chr1_random 145049 145230 -4176316 + FAM SINE Alu 1 49 0 911 249 40 33 chr1_random 145237 145634 -4175912 + L1M4 LINE L1 1070 1469 -5073 534 286 56 31 chr1_random 145681 145877 -4175669 + LTR53 LTR ERVL 319 519 0 375 245 103 58 chr1_random 146159 146338 -4175208 - L1MDa LINE L1 -6150 390 194 270 0 0 0 chr1_random 146338 146368 -4175178 + (CAAAA)n Simple_repeat Simple_repeat 1 30 0 375 245 103 58 chr1_random 146368 146449 -4175097 - L1MDa LINE L1 -6346 194 118 6285 89 7 7 chr1_random 146827 147501 -4174045 - L1PA11 LINE L1 0 6174 5493 1779 153 6 19 chr1_random 147501 147815 -4173731 - AluSx SINE Alu 0 312 3 6285 89 7 7 chr1_random 147815 148466 -4173080 - L1PA11 LINE L1 -680 5494 4844 2105 176 66 29 chr1_random 148466 148908 -4172638 - LTR2B LTR ERV1 -1 489 32 26499 73 13 7 chr1_random 148927 153137 -4168409 - Harlequin LTR ERV1 0 6896 2613 651 136 0 18 chr1_random 153239 153349 -4168197 - MSTA LTR MaLR -318 110 3 536 221 0 66 chr1_random 154044 154180 -4167366 + FLAM_A SINE Alu 1 127 -6 2086 125 0 3 chr1_random 154775 155087 -4166459 - AluSq SINE Alu -2 311 1 240 264 22 11 chr1_random 159257 159348 -4162198 + L1MEc LINE L1 663 754 -5642 1201 151 23 32 chr1_random 159354 159572 -4161974 + AluJo SINE Alu 84 299 -13 562 251 162 28 chr1_random 159667 159846 -4161700 - MER63A DNA MER1_type -5 205 3 982 245 87 19 chr1_random 159849 160037 -4161509 + L1M4 LINE L1 4420 4594 -1552 1887 124 28 0 chr1_random 160037 160327 -4161219 + AluSx SINE Alu 1 298 -14 982 245 87 19 chr1_random 160327 160550 -4160996 + L1M4 LINE L1 4594 4859 -1287 255 136 68 0 chr1_random 160853 160897 -4160649 - L2 LINE L2 -2 3311 3265 759 182 0 0 chr1_random 161022 161154 -4160392 - FLAM_A SINE Alu 0 133 2 1228 286 83 73 chr1_random 161649 162118 -4159428 + L2 LINE L2 2251 2714 -599 1594 181 7 3 chr1_random 162118 162405 -4159141 + AluJo SINE Alu 1 288 -24 1228 286 83 73 chr1_random 162405 162427 -4159119 + L2 LINE L2 2714 2734 -579 1721 147 10 10 chr1_random 162427 162727 -4158819 + AluJb SINE Alu 1 300 -12 1228 286 83 73 chr1_random 162727 163048 -4158498 + L2 LINE L2 2734 3050 -263 1671 184 14 0 chr1_random 163048 163342 -4158204 - AluJb SINE Alu -14 298 1 1228 286 83 73 chr1_random 163342 163557 -4157989 + L2 LINE L2 3050 3287 -26 1456 148 45 71 chr1_random 163557 163867 -4157679 - AluJo SINE Alu -10 302 1 1228 286 83 73 chr1_random 163867 163894 -4157652 + L2 LINE L2 3287 3312 -1 2217 106 0 0 chr1_random 164343 164644 -4156902 - AluSx SINE Alu -11 301 1 619 274 6 6 chr1_random 164733 164912 -4156634 + Tigger8 DNA MER2_type 334 512 -154 1498 103 0 0 chr1_random 165278 165481 -4156065 + AluSg SINE Alu 1 203 -107 21 0 0 0 chr1_random 165500 165521 -4156025 + AT_rich Low_complexity Low_complexity 1 21 0 1166 148 26 148 chr1_random 165521 165860 -4155686 + AluJo SINE Alu 2 299 -3 371 350 113 33 chr1_random 166295 166337 -4155209 - L2 LINE L2 -337 2977 2940 1956 108 29 29 chr1_random 166337 166644 -4154902 - AluSq SINE Alu -6 307 1 371 350 113 33 chr1_random 166644 166938 -4154608 - L2 LINE L2 -374 2940 2614 878 184 23 6 chr1_random 167054 167228 -4154318 + AluJo SINE Alu 71 247 -65 1964 132 3 3 chr1_random 167284 167588 -4153958 + AluSx SINE Alu 1 304 -8 207 298 0 0 chr1_random 167911 167968 -4153578 + C-rich Low_complexity Low_complexity 3 59 0 615 299 70 50 chr1_random 168186 168645 -4152901 + L2 LINE L2 2424 2891 -423 261 229 46 73 chr1_random 169038 169147 -4152399 - LTR16A1 LTR ERVL -12 445 340 607 158 109 150 chr1_random 169159 169406 -4152140 - LTR16A1 LTR ERVL -220 237 1 213 264 0 0 chr1_random 169427 169499 -4152047 + (TA)n Simple_repeat Simple_repeat 1 72 0 1887 112 45 0 chr1_random 169499 169768 -4151778 - AluSx SINE Alu -25 287 7 1676 155 32 0 chr1_random 169784 170062 -4151484 - AluJb SINE Alu -25 287 1 1109 179 10 0 chr1_random 170093 170289 -4151257 + AluJo SINE Alu 1 198 -114 762 224 12 18 chr1_random 170290 170460 -4151086 + AluJb SINE Alu 142 310 -2 1416 189 35 14 chr1_random 170468 170754 -4150792 + AluJo SINE Alu 1 292 -20 693 265 14 19 chr1_random 170985 171200 -4150346 + LTR67 LTR ERVL 335 548 -9 491 185 67 42 chr1_random 172245 172364 -4149182 - LTR67 LTR ERVL -8 549 428 319 282 52 81 chr1_random 172478 172652 -4148894 - MLT1K LTR MaLR -411 177 9 4492 151 11 25 chr1_random 172774 173343 -4148203 + MER50 LTR ERV1 2 559 -175 2256 88 0 0 chr1_random 173343 173637 -4147909 - AluSx SINE Alu -18 294 1 4492 151 11 25 chr1_random 173637 173811 -4147735 + MER50 LTR ERV1 559 734 0 417 339 163 20 chr1_random 174433 174837 -4146709 - L2 LINE L2 -4 3309 2848 1976 95 53 0 chr1_random 175861 176145 -4145401 + AluSx SINE Alu 1 299 -13 2294 97 31 16 chr1_random 176330 176649 -4144897 + THE1B LTR MaLR 1 324 -40 1951 186 164 24 chr1_random 177236 177299 -4144247 - MLT2B2 LTR ERVL 0 515 462 1517 164 3 56 chr1_random 177299 177603 -4143943 - AluJb SINE Alu -24 288 1 1951 186 164 24 chr1_random 177603 177991 -4143555 - MLT2B2 LTR ERVL -53 462 1 7040 133 39 6 chr1_random 177991 179059 -4142487 - ERVL-B2 LTR ERVL -7 5757 4654 693 134 0 0 chr1_random 179060 179157 -4142389 - MSTC LTR MaLR -331 97 1 286 300 40 54 chr1_random 179226 179588 -4141958 - L2 LINE L2 -1074 2240 1793 865 136 0 0 chr1_random 180020 180145 -4141401 - FLAM_C SINE Alu -18 125 1 212 254 209 36 chr1_random 180341 180451 -4141095 - L2 LINE L2 0 3313 3185 188 191 95 0 chr1_random 180539 180581 -4140965 + L2 LINE L2 3268 3313 0 345 275 69 19 chr1_random 180597 180757 -4140789 + L2 LINE L2 3146 3313 0 2489 53 0 0 chr1_random 181417 181721 -4139825 - AluY SINE Alu -7 304 1 956 181 5 80 chr1_random 183205 183328 -4138218 - MER5A DNA MER1_type -5 184 80 2209 104 7 0 chr1_random 183328 183637 -4137909 - AluSq SINE Alu -2 311 1 956 181 5 80 chr1_random 183637 183712 -4137834 - MER5A DNA MER1_type -109 80 1 496 175 10 19 chr1_random 183812 183915 -4137631 - AluJo/FRAM SINE Alu -1 311 210 1843 125 0 36 chr1_random 384020 384325 -3937221 + AluSc SINE Alu 12 305 -4 2086 135 0 19 chr1_random 384335 384646 -3936900 + AluSx SINE Alu 1 305 -7 5963 129 19 8 chr1_random 384646 385586 -3935960 + L1MC1 LINE L1 5287 6236 -97 324 0 0 0 chr1_random 385625 385661 -3935885 + (CA)n Simple_repeat Simple_repeat 2 37 0 1725 272 42 6 chr1_random 385662 386165 -3935381 + L1ME3A LINE L1 5442 5962 -208 687 299 100 24 chr1_random 386346 386637 -3934909 + MLT2F LTR ERVL 1 313 -350 464 275 48 12 chr1_random 386631 386798 -3934748 + MLT2F LTR ERVL 489 661 -2 * 433 250 44 19 chr1_random 386801 386961 -3934585 + L1ME3A LINE L1 6007 6170 0 281 302 47 0 chr1_random 387219 387325 -3934221 + MIR SINE MIR 151 261 -1 2082 200 67 4 chr1_random 387516 387980 -3933566 + MLT1D LTR MaLR 10 502 -3 1242 241 41 31 chr1_random 388760 389079 -3932467 + Charlie1a DNA MER1_type 13 334 -1121 1011 151 0 57 chr1_random 389085 389277 -3932269 - AluSc SINE Alu -14 295 115 364 256 0 12 chr1_random 389280 389362 -3932184 + Charlie1a DNA MER1_type 352 432 -1023 2040 141 0 0 chr1_random 389407 389721 -3931825 + AluSx SINE Alu 1 314 0 1215 133 189 15 chr1_random 389721 389991 -3931555 + Charlie1a DNA MER1_type 559 875 -580 801 168 38 0 chr1_random 390040 390171 -3931375 + FRAM SINE Alu 1 131 -45 2009 197 58 56 chr1_random 390181 390754 -3930792 + Charlie1a DNA MER1_type 882 1455 0 2093 112 16 0 chr1_random 391196 391500 -3930046 + AluSp SINE Alu 3 311 -2 2318 78 0 0 chr1_random 392097 392419 -3929127 - AluY SINE Alu 0 322 1 270 0 0 0 chr1_random 392667 392697 -3928849 + (CA)n Simple_repeat Simple_repeat 1 30 0 301 237 61 111 chr1_random 392697 392895 -3928651 - L1MC4a LINE L1 -1892 5916 5729 21 0 0 0 chr1_random 393249 393270 -3928276 + AT_rich Low_complexity Low_complexity 1 21 0 1480 175 121 36 chr1_random 393758 394090 -3927456 + MLT1A1 LTR MaLR 1 360 -5 398 265 99 22 chr1_random 394287 394468 -3927078 - L1ME LINE L1 -347 5774 5580 239 152 22 0 chr1_random 394575 394621 -3926925 - L1ME LINE L1 -687 5434 5388 523 242 123 33 chr1_random 394855 395099 -3926447 + L1ME LINE L1 5550 5815 -306 25 0 0 0 chr1_random 395295 395320 -3926226 + AT_rich Low_complexity Low_complexity 1 25 0 25 31 0 0 chr1_random 395626 395658 -3925888 + AT_rich Low_complexity Low_complexity 1 32 0 2128 93 4 14 chr1_random 396013 396291 -3925255 + AluSx SINE Alu 1 275 -37 188 0 74 0 chr1_random 396294 396321 -3925225 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 2296 98 7 7 chr1_random 397317 397622 -3923924 - AluSx SINE Alu -7 305 1 2355 80 10 0 chr1_random 398826 399128 -3922418 - AluSx SINE Alu -7 305 1 198 264 94 47 chr1_random 399238 399344 -3922202 + L2 LINE L2 3186 3296 -17 214 352 107 0 chr1_random 400336 400495 -3921051 - MIR SINE MIR -36 226 51 321 255 84 46 chr1_random 400555 400692 -3920854 + MIR SINE MIR 68 206 -56 2066 112 0 0 chr1_random 400753 401030 -3920516 - AluSx SINE Alu -22 290 14 2388 84 0 0 chr1_random 401450 401746 -3919800 - AluY SINE Alu -15 296 1 2286 118 0 0 chr1_random 402039 402352 -3919194 + AluSq SINE Alu 1 313 0 501 298 61 26 chr1_random 402514 402742 -3918804 - MIR SINE MIR -13 249 14 351 313 27 20 chr1_random 402767 402917 -3918629 + L2 LINE L2 2594 2744 -570 1934 142 20 7 chr1_random 402923 403226 -3918320 - AluSx SINE Alu -5 307 1 37 39 0 0 chr1_random 403526 403577 -3917969 + AT_rich Low_complexity Low_complexity 1 51 0 955 144 52 0 chr1_random 403692 403845 -3917701 + FRAM SINE Alu 1 160 -16 * 1191 164 9 40 chr1_random 403844 404070 -3917476 + AluJo SINE Alu 87 305 -7 2079 127 21 0 chr1_random 404074 404365 -3917181 + AluSx SINE Alu 1 297 -15 1729 130 76 14 chr1_random 404675 404952 -3916594 + AluSx SINE Alu 1 294 -18 769 253 85 18 chr1_random 405337 405618 -3915928 + L1MC/D LINE L1 5313 5612 -2196 1985 109 25 0 chr1_random 405619 405893 -3915653 + AluSq SINE Alu 1 281 -32 293 0 0 26 chr1_random 405958 405996 -3915550 + (CA)n Simple_repeat Simple_repeat 2 38 0 586 262 71 19 chr1_random 406935 407145 -3914401 + L1MC/D LINE L1 5589 5809 -1999 224 167 0 19 chr1_random 408013 408067 -3913479 + CT-rich Low_complexity Low_complexity 3 55 0 1095 149 0 11 chr1_random 408595 408770 -3912776 - AluJ SINE Alu -11 301 129 2331 91 7 7 chr1_random 408785 409083 -3912463 + AluSx SINE Alu 1 298 -14 1240 116 0 0 chr1_random 409083 409247 -3912299 + AluSq SINE Alu 134 297 -16 593 130 10 10 chr1_random 409264 409364 -3912182 - AluJ SINE Alu -186 126 27 2296 106 0 25 chr1_random 409917 410237 -3911309 + AluSx SINE Alu 1 312 0 2178 93 0 7 chr1_random 410237 410515 -3911031 + AluSx SINE Alu 1 276 -36 254 175 32 32 chr1_random 411905 411968 -3909578 + L2 LINE L2 2688 2750 -564 1216 205 48 4 chr1_random 412182 412455 -3909091 + AluJo SINE Alu 1 285 -17 568 98 0 12 chr1_random 412570 412652 -3908894 + AluSg/x SINE Alu 214 294 -16 235 291 95 34 chr1_random 412695 412874 -3908672 + L2 LINE L2 2826 3015 -257 1815 155 10 7 chr1_random 413144 413440 -3908106 - AluSx SINE Alu -15 297 1 2007 139 10 3 chr1_random 413470 413772 -3907774 - AluSx SINE Alu -8 304 1 305 79 0 0 chr1_random 414253 414291 -3907255 - 5S rRNA rRNA -83 38 1 2152 92 7 33 chr1_random 414323 414627 -3906919 - AluSq SINE Alu -17 296 1 313 275 17 25 chr1_random 414742 414852 -3906694 + L2 LINE L2 1716 1826 -1488 2435 94 0 0 chr1_random 414852 415161 -3906385 - AluSg SINE Alu -1 309 1 420 222 24 48 chr1_random 415286 415412 -3906134 - AluSc SINE Alu -182 127 5 1870 155 10 3 chr1_random 415788 416084 -3905462 + AluJo SINE Alu 1 298 -14 1943 165 77 34 chr1_random 416091 416382 -3905164 - MER90 LTR ERV1 0 614 337 2323 105 0 3 chr1_random 416382 416688 -3904858 + AluSq SINE Alu 1 305 -8 2640 51 0 13 chr1_random 416689 417004 -3904542 + AluY SINE Alu 1 311 0 1943 165 77 34 chr1_random 417004 417128 -3904418 - MER90 LTR ERV1 -276 338 179 441 150 60 0 chr1_random 417133 417220 -3904326 + MSTB LTR MaLR 1 80 -346 1623 107 30 17 chr1_random 417223 417457 -3904089 + AluSx SINE Alu 64 300 -12 459 35 0 0 chr1_random 417816 417873 -3903673 + (TTTTA)n Simple_repeat Simple_repeat 3 59 0 1918 122 68 0 chr1_random 418278 418557 -3902989 + AluSx SINE Alu 1 298 -14 191 141 172 16 chr1_random 418570 418634 -3902912 + MER5C DNA MER1_type 111 184 -140 706 204 68 23 chr1_random 418639 418815 -3902731 - MER58B DNA MER1_type -3 338 155 926 154 39 0 chr1_random 418815 418971 -3902575 - FRAM SINE Alu -13 163 2 425 259 82 0 chr1_random 418973 419108 -3902438 - MER58B DNA MER1_type -183 158 13 188 304 0 0 chr1_random 419259 419315 -3902231 + L2 LINE L2 3013 3068 -245 438 248 124 40 chr1_random 419317 419421 -3902125 + L1MC5 LINE L1 7612 7706 -255 779 178 0 0 chr1_random 419421 419539 -3902007 - FLAM_C SINE Alu -15 118 1 438 248 124 40 chr1_random 419539 419708 -3901838 + L1MC5 LINE L1 7706 7908 -53 960 134 99 17 chr1_random 419725 419929 -3901617 + AluJo SINE Alu 126 343 0 1361 157 164 4 chr1_random 419972 420234 -3901312 - AluSx SINE Alu -8 304 1 1527 118 0 5 chr1_random 420391 420630 -3900916 + AluSg/x SINE Alu 81 310 0 247 179 155 71 chr1_random 420779 420808 -3900738 - LTR24C LTR ERV1 -27 608 583 2130 120 7 0 chr1_random 420808 421107 -3900439 + AluSx SINE Alu 1 301 -11 247 179 155 71 chr1_random 421107 421161 -3900385 - LTR24C LTR ERV1 -52 583 518 2056 123 0 16 chr1_random 421187 421324 -3900222 + AluSq SINE Alu 1 139 -174 2209 125 0 7 chr1_random 421324 421627 -3899919 + AluSg SINE Alu 1 301 -9 2056 123 0 16 chr1_random 421627 421799 -3899747 + AluSq SINE Alu 139 305 -8 1768 117 4 4 chr1_random 422045 422294 -3899252 - AluSq SINE Alu -4 309 61 2158 132 3 7 chr1_random 422395 422705 -3898841 + AluSx SINE Alu 2 310 -2 702 225 110 13 chr1_random 422886 423113 -3898433 + MER115 DNA AcHobo 1 249 -444 653 205 53 0 chr1_random 423212 423363 -3898183 + MER115 DNA AcHobo 464 622 -71 402 207 12 12 chr1_random 423375 423457 -3898089 - AluJ/FLAM SINE Alu -210 92 11 2044 139 3 7 chr1_random 423474 423777 -3897769 - AluSx SINE Alu -10 302 1 2372 205 28 51 chr1_random 425121 425425 -3896121 + MER90 LTR ERV1 1 310 -265 2219 92 3 3 chr1_random 425425 425735 -3895811 - AluSp SINE Alu 0 311 2 2372 205 28 51 chr1_random 425735 425765 -3895781 + MER90 LTR ERV1 310 339 -236 2178 118 7 3 chr1_random 425765 426069 -3895477 + AluSx SINE Alu 1 305 -7 2105 127 0 0 chr1_random 426073 426364 -3895182 + AluSg1 SINE Alu 6 296 -13 2372 205 28 51 chr1_random 426364 426587 -3894959 + MER90 LTR ERV1 342 552 -23 332 218 38 75 chr1_random 426723 426856 -3894690 - L1MEc LINE L1 -3735 2480 2353 1836 165 7 0 chr1_random 426858 427149 -3894397 - AluJb SINE Alu -18 294 2 24 0 0 0 chr1_random 427168 427192 -3894354 + AT_rich Low_complexity Low_complexity 1 24 0 2004 149 0 10 chr1_random 427263 427564 -3893982 - AluJb SINE Alu -14 298 1 46 54 0 0 chr1_random 427763 427837 -3893709 + AT_rich Low_complexity Low_complexity 1 74 0 2039 88 30 0 chr1_random 427909 428205 -3893341 - AluSp SINE Alu 0 320 17 216 135 0 0 chr1_random 428205 428242 -3893304 + (T)n Simple_repeat Simple_repeat 1 37 0 297 263 0 21 chr1_random 428306 428401 -3893145 - L1MEc LINE L1 -4677 1719 1627 2129 116 0 35 chr1_random 428407 428726 -3892820 - AluSx SINE Alu -4 308 1 1525 106 35 35 chr1_random 428993 429247 -3892299 + L1PA8A LINE L1 5878 6131 0 283 205 107 66 chr1_random 429863 429985 -3891561 + MLT1H LTR MaLR 421 547 -2 2306 102 3 3 chr1_random 430241 430546 -3891000 + AluSx SINE Alu 1 305 -7 411 334 52 67 chr1_random 431325 431654 -3889892 + L2 LINE L2 2949 3272 0 1191 131 0 11 chr1_random 431801 431984 -3889562 - AluSg/x SINE Alu -1 309 129 246 197 106 0 chr1_random 432644 432710 -3888836 + L1P LINE L1 4943 5015 -1131 521 290 99 26 chr1_random 433010 433303 -3888243 + L1MC4a LINE L1 5344 5660 -461 1974 140 7 0 chr1_random 433324 433624 -3887922 + AluJb SINE Alu 1 302 0 2744 144 7 18 chr1_random 433751 434189 -3887357 - Tigger2a DNA MER2_type -1 433 1 332 250 142 25 chr1_random 434189 434309 -3887237 - MIR SINE MIR -105 157 24 244 244 113 81 chr1_random 434326 434446 -3887100 + L1MC4a LINE L1 5702 5834 -1974 2271 107 7 3 chr1_random 434446 434756 -3886790 + AluSp SINE Alu 1 311 -2 244 244 113 81 chr1_random 434756 434856 -3886690 + L1MC4a LINE L1 5834 5929 -1879 23 54 0 0 chr1_random 434898 434935 -3886611 + AT_rich Low_complexity Low_complexity 1 37 0 1478 119 0 0 chr1_random 435346 435547 -3885999 - AluSg/x SINE Alu -18 292 92 845 162 0 22 chr1_random 435785 435921 -3885625 + AluJo/FLAM SINE Alu 1 133 -179 1276 197 123 25 chr1_random 435924 436011 -3885535 + AluJb SINE Alu 1 78 -234 1727 147 8 4 chr1_random 436011 436269 -3885277 + AluSq SINE Alu 42 300 -13 1276 197 123 25 chr1_random 436269 436465 -3885081 + AluJb SINE Alu 78 312 0 2313 111 0 0 chr1_random 437040 437338 -3884208 + AluSx SINE Alu 1 298 -14 2354 88 3 3 chr1_random 438294 438601 -3882945 + AluSg SINE Alu 1 307 -3 374 276 57 8 chr1_random 439188 439311 -3882235 - L2 LINE L2 -2 3270 3142 26 50 0 0 chr1_random 439311 439351 -3882195 + AT_rich Low_complexity Low_complexity 1 40 0 2201 118 0 7 chr1_random 439408 439713 -3881833 + AluSx SINE Alu 1 303 -9 662 91 23 0 chr1_random 440046 440134 -3881412 - AluS SINE Alu -218 95 6 344 100 50 25 chr1_random 440392 440472 -3881074 + CT-rich Low_complexity Low_complexity 4 85 0 2277 102 0 0 chr1_random 440478 440781 -3880765 - AluSc SINE Alu -6 303 1 371 261 87 31 chr1_random 442009 442170 -3879376 + Charlie8 DNA MER1_type 17 186 -2231 829 198 38 0 chr1_random 442998 443155 -3878391 + MER67A LTR ERV1 381 543 0 901 131 86 11 chr1_random 444515 444690 -3876856 + MER53 DNA DNA 1 188 -1 2584 65 3 0 chr1_random 444847 445156 -3876390 - AluSp SINE Alu -2 311 2 379 346 20 62 chr1_random 445156 445462 -3876084 + L2 LINE L2 2269 2561 -753 2361 75 3 0 chr1_random 445610 445902 -3875644 - AluY SINE Alu -18 293 1 677 195 0 0 chr1_random 446534 446652 -3874894 - FLAM_C SINE Alu -15 118 1 2222 125 0 0 chr1_random 446661 446973 -3874573 - AluSx SINE Alu 0 312 1 430 347 0 20 chr1_random 447101 447352 -3874194 - L1MC/D LINE L1 -2211 5597 5352 230 237 0 0 chr1_random 447375 447434 -3874112 - L1M LINE L1 -769 5395 5337 2195 115 0 0 chr1_random 447456 447751 -3873795 - AluSx SINE Alu -17 295 1 1770 173 0 13 chr1_random 447757 448063 -3873483 - AluJo SINE Alu -10 302 1 443 225 7 72 chr1_random 448186 448259 -3873287 - MIR SINE MIR -24 238 177 2033 154 46 14 chr1_random 448259 448609 -3872937 - MLT1A1 LTR MaLR -2 363 3 443 225 7 72 chr1_random 448609 448673 -3872873 - MIR SINE MIR -85 177 110 2357 61 27 3 chr1_random 448681 448976 -3872570 - AluY SINE Alu -9 302 1 428 301 0 16 chr1_random 449490 449613 -3871933 + L1MC/D LINE L1 5524 5644 -2164 1580 189 0 0 chr1_random 449787 450074 -3871472 - AluJb SINE Alu 0 307 21 606 267 26 12 chr1_random 450156 450346 -3871200 + MLT1H LTR MaLR 346 549 0 291 266 24 32 chr1_random 450356 450480 -3871066 - L1 LINE L1 -1591 4555 4433 1244 228 56 71 chr1_random 450743 451207 -3870339 - L1ME2 LINE L1 -19 6214 5758 631 253 63 23 chr1_random 451180 451532 -3870014 - L1ME2 LINE L1 -3772 2443 2141 * 21 0 0 0 chr1_random 452514 452535 -3869011 + AT_rich Low_complexity Low_complexity 1 21 0 1141 160 0 0 chr1_random 452622 452797 -3868749 - AluJb SINE Alu -5 307 133 515 226 97 16 chr1_random 453219 453343 -3868203 - L2 LINE L2 -5 3308 3175 542 314 32 5 chr1_random 453574 453762 -3867784 + MIR SINE MIR 9 201 -61 1676 169 13 49 chr1_random 453902 454209 -3867337 - AluJb SINE Alu -16 296 1 210 229 0 145 chr1_random 454601 454684 -3866862 + L2 LINE L2 3242 3312 -1 220 260 125 42 chr1_random 455997 456150 -3865396 + MIR SINE MIR 28 195 -63 2246 113 0 3 chr1_random 456499 456800 -3864746 + AluSq SINE Alu 1 300 -13 774 184 0 29 chr1_random 457183 457319 -3864227 - FLAM_C SINE Alu -3 140 9 241 334 101 24 chr1_random 457525 457779 -3863767 - L2 LINE L2 -256 3016 2742 335 218 0 0 chr1_random 458139 458194 -3863352 + MIR SINE MIR 41 95 -167 2406 81 0 3 chr1_random 458486 458782 -3862764 + AluSc SINE Alu 1 295 -14 2468 88 3 0 chr1_random 459086 459392 -3862154 - AluSq SINE Alu -6 307 1 209 150 0 0 chr1_random 459515 459555 -3861991 - MIR SINE MIR -61 201 162 1047 308 69 9 chr1_random 460112 460577 -3860969 - L1ME3A LINE L1 -219 5951 5459 2301 103 0 7 chr1_random 460727 461037 -3860509 - AluSc SINE Alu -1 308 1 1310 232 104 79 chr1_random 461410 461598 -3859948 + MLT1D LTR MaLR 1 183 -322 1551 188 20 16 chr1_random 461598 461901 -3859645 - AluJo SINE Alu -8 304 1 1310 232 104 79 chr1_random 461901 461988 -3859558 + MLT1D LTR MaLR 183 266 -239 2003 143 3 3 chr1_random 461988 462288 -3859258 - AluSx SINE Alu -12 300 1 1310 232 104 79 chr1_random 462288 462502 -3859044 + MLT1D LTR MaLR 266 503 -2 2288 115 0 0 chr1_random 462919 463223 -3858323 - AluSx SINE Alu -8 304 1 4220 91 4 11 chr1_random 463393 463955 -3857591 - L1PA13 LINE L1 -3 6160 5603 371 325 66 13 chr1_random 464177 464328 -3857218 - L2 LINE L2 -1 3271 3113 2313 113 0 0 chr1_random 465610 465910 -3855636 - AluSq SINE Alu -13 300 1 2148 85 10 33 chr1_random 465914 466220 -3855326 - AluY SINE Alu -12 299 1 836 132 3 4 chr1_random 466353 466488 -3855058 - L1PA12 LINE L1 -279 5889 5757 746 228 35 12 chr1_random 467735 467906 -3853640 + MLT1A1 LTR MaLR 1 175 -190 1518 197 0 0 chr1_random 468007 468266 -3853280 + MLT1A1 LTR MaLR 107 365 0 2483 85 0 0 chr1_random 468482 468789 -3852757 - AluSg SINE Alu -3 307 1 687 305 125 36 chr1_random 468860 469332 -3852214 + L2 LINE L2 2328 2841 -473 2194 94 3 10 chr1_random 471159 471457 -3850089 - AluSc SINE Alu -13 296 1 620 218 30 111 chr1_random 471552 471786 -3849760 + MER112 DNA MER1_type 33 247 -13 205 300 146 0 chr1_random 472950 473060 -3848486 + L3b LINE CR1 1317 1442 -141 190 271 57 43 chr1_random 473307 473377 -3848169 + L2 LINE L2 3242 3312 -1 2115 112 0 14 chr1_random 473609 473918 -3847628 - AluSx SINE Alu 0 305 1 3332 243 47 25 chr1_random 474141 475744 -3845802 + L1MEc LINE L1 1415 3017 -3198 2112 137 0 7 chr1_random 475744 476044 -3845502 + AluSx SINE Alu 1 298 -14 3332 243 47 25 chr1_random 476044 476192 -3845354 + L1MEc LINE L1 3017 3160 -3055 814 171 31 0 chr1_random 476220 476349 -3845197 + FRAM SINE Alu 14 146 -30 2200 124 0 16 chr1_random 477083 477397 -3844149 + AluSx SINE Alu 1 309 -3 2192 104 7 0 chr1_random 479389 479686 -3841860 + AluSg SINE Alu 1 299 -11 2547 84 0 0 chr1_random 480392 480703 -3840843 + AluSx SINE Alu 1 311 -1 22 0 0 0 chr1_random 480856 480878 -3840668 + AT_rich Low_complexity Low_complexity 1 22 0 22 0 0 0 chr1_random 481331 481353 -3840193 + AT_rich Low_complexity Low_complexity 1 22 0 2306 99 0 7 chr1_random 481563 481867 -3839679 - AluSq SINE Alu -9 304 3 22 0 0 0 chr1_random 482548 482570 -3838976 + AT_rich Low_complexity Low_complexity 1 22 0 1456 188 40 0 chr1_random 482570 482847 -3838699 - AluJo SINE Alu -24 288 1 2142 105 16 19 chr1_random 483213 483528 -3838018 - L1MC1 LINE L1 -2 6331 6018 810 181 0 14 chr1_random 483530 483668 -3837878 - FLAM_C SINE Alu -2 141 6 2062 133 3 13 chr1_random 483852 484154 -3837392 + AluSx SINE Alu 1 299 -13 2226 167 119 17 chr1_random 485118 485590 -3835956 - MLT2B1 LTR ERVL 0 520 1 223 139 28 0 chr1_random 485873 485909 -3835637 + L2 LINE L2 3265 3301 -12 318 243 59 101 chr1_random 486254 486423 -3835123 - MER5B DNA MER1_type 0 178 17 2321 118 0 6 chr1_random 486672 486987 -3834559 + AluSq SINE Alu 1 313 0 26 0 0 0 chr1_random 487244 487270 -3834276 + AT_rich Low_complexity Low_complexity 1 26 0 233 400 73 12 chr1_random 487670 487835 -3833711 - L2 LINE L2 -2 3270 3096 368 342 93 0 chr1_random 488848 489041 -3832505 + MIR SINE MIR 3 213 -49 324 0 0 0 chr1_random 490206 490242 -3831304 + (TG)n Simple_repeat Simple_repeat 2 37 0 22 0 0 0 chr1_random 490423 490445 -3831101 + AT_rich Low_complexity Low_complexity 1 22 0 557 319 10 39 chr1_random 492405 492461 -3829085 + MIR SINE MIR 14 70 -192 2106 116 27 3 chr1_random 492461 492755 -3828791 + AluSg SINE Alu 1 301 -9 557 319 10 39 chr1_random 492755 492905 -3828641 + MIR SINE MIR 70 214 -48 284 247 12 0 chr1_random 492907 492988 -3828558 + (TA)n Simple_repeat Simple_repeat 2 83 0 1742 171 19 19 chr1_random 493527 493836 -3827710 + AluJo SINE Alu 1 309 -3 1277 95 12 0 chr1_random 495295 495463 -3826083 + AluSq SINE Alu 134 303 -10 338 258 38 102 chr1_random 495810 495996 -3825550 - MIR SINE MIR -81 181 8 2250 164 62 2 chr1_random 496398 496800 -3824746 - MSTB LTR MaLR 0 426 1 2154 127 3 0 chr1_random 496813 497113 -3824433 - AluSx SINE Alu -11 301 1 2010 120 14 0 chr1_random 497874 498165 -3823381 + AluSq SINE Alu 1 295 -18 255 192 0 0 chr1_random 498211 498263 -3823283 + L1ME LINE L1 5735 5786 -335 1007 129 47 10 chr1_random 498413 498606 -3822940 - L1 LINE L1 -1753 4393 4194 778 109 46 86 chr1_random 499449 499598 -3821948 - L1PA13 LINE L1 -3 6160 6017 267 31 0 0 chr1_random 499598 499630 -3821916 + (TC)n Simple_repeat Simple_repeat 1 32 0 778 109 46 86 chr1_random 499630 499655 -3821891 - L1PA13 LINE L1 -146 6017 5993 416 284 70 114 chr1_random 499828 500178 -3821368 + L1MC/D LINE L1 4175 4539 -1607 1990 135 21 0 chr1_random 500178 500467 -3821079 + AluSx SINE Alu 3 297 -15 416 284 70 114 chr1_random 500467 500777 -3820769 + L1MC/D LINE L1 4539 4787 -1359 1710 130 76 14 chr1_random 500777 501054 -3820492 + AluSx SINE Alu 1 294 -18 416 284 70 114 chr1_random 501054 501290 -3820256 + L1MC/D LINE L1 4787 5032 -1114 669 251 86 18 chr1_random 501441 501720 -3819826 + L1MC/D LINE L1 5315 5612 -2196 2190 80 25 0 chr1_random 501721 501995 -3819551 + AluSq SINE Alu 1 281 -32 333 0 0 0 chr1_random 502060 502097 -3819449 + (CA)n Simple_repeat Simple_repeat 2 38 0 206 98 49 0 chr1_random 503007 503048 -3818498 + (CAAA)n Simple_repeat Simple_repeat 4 46 0 533 255 52 21 chr1_random 503054 503246 -3818300 + L1MC/D LINE L1 5612 5809 -1999 224 167 0 19 chr1_random 504114 504168 -3817378 + CT-rich Low_complexity Low_complexity 3 55 0 2275 86 10 7 chr1_random 504453 504756 -3816790 - AluSc SINE Alu -5 304 1 322 348 71 0 chr1_random 505468 505652 -3815894 + L1ME4a LINE L1 4252 4448 -1698 545 311 44 22 chr1_random 505776 506412 -3815134 + L1ME4a LINE L1 4578 5227 -919 606 117 21 0 chr1_random 506458 506552 -3814994 + MER3 DNA MER1_type 9 104 -105 634 281 103 38 chr1_random 507085 507619 -3813927 + L1ME4a LINE L1 5547 6115 -6 771 144 0 8 chr1_random 508585 508703 -3812843 + FLAM_C SINE Alu 1 117 -16 23 33 0 0 chr1_random 508993 509023 -3812523 + AT_rich Low_complexity Low_complexity 1 30 0 262 336 115 0 chr1_random 509646 509759 -3811787 + L2 LINE L2 3133 3258 -14 269 330 28 9 chr1_random 509790 509899 -3811647 + MIR SINE MIR 109 219 -43 296 293 18 104 chr1_random 509930 510094 -3811452 + MLT1K LTR MaLR 30 179 -409 369 246 155 0 chr1_random 510232 510374 -3811172 - MER104 DNA Tc2 -16 164 1 1491 144 30 111 chr1_random 510496 510865 -3810681 - MLT1B LTR MaLR 0 390 52 297 248 26 88 chr1_random 511450 511563 -3809983 - MIR SINE MIR -36 226 121 21 36 0 0 chr1_random 511564 511592 -3809954 + AT_rich Low_complexity Low_complexity 1 28 0 196 321 19 75 chr1_random 511700 511806 -3809740 - MIR SINE MIR -146 116 17 23 0 0 0 chr1_random 512449 512472 -3809074 + AT_rich Low_complexity Low_complexity 1 23 0 440 287 85 27 chr1_random 512919 513107 -3808439 + MIR SINE MIR 10 208 -54 370 340 21 0 chr1_random 513291 513435 -3808111 + MIR SINE MIR 106 252 -10 1354 287 65 28 chr1_random 513875 514339 -3807207 - L2 LINE L2 0 3313 2833 896 259 70 15 chr1_random 514353 514681 -3806865 + L1ME3A LINE L1 5688 6033 -137 230 221 257 35 chr1_random 514812 514925 -3806621 - L2 LINE L2 -1497 1817 1680 308 173 316 0 chr1_random 514951 515090 -3806456 + MER113 DNA MER1_type? 46 228 -293 24 32 0 0 chr1_random 515098 515129 -3806417 + AT_rich Low_complexity Low_complexity 1 31 0 381 43 0 0 chr1_random 515543 515590 -3805956 + (TG)n Simple_repeat Simple_repeat 1 47 0 2577 61 3 0 chr1_random 515815 516125 -3805421 + AluSp SINE Alu 1 311 -2 807 131 86 11 chr1_random 516282 516457 -3805089 - MER53 DNA DNA -1 188 1 758 198 38 0 chr1_random 517817 517974 -3803572 - MER67A LTR ERV1 0 543 381 301 237 47 31 chr1_random 518798 518959 -3802587 - Charlie8 DNA MER1_type -2231 186 17 2460 46 3 0 chr1_random 520187 520490 -3801056 + AluY SINE Alu 1 304 -7 2238 104 37 0 chr1_random 521022 521320 -3800226 - AluSx SINE Alu -3 309 1 393 240 211 11 chr1_random 521817 521992 -3799554 - MER63A DNA MER1_type 0 210 1 385 319 123 0 chr1_random 522189 522327 -3799219 - MIR3 SINE MIR -9 199 45 29 0 0 25 chr1_random 522672 522689 -3798857 + AT_rich Low_complexity Low_complexity 1 17 -22 929 190 0 11 chr1_random 522689 522852 -3798694 + FAM SINE Alu 1 163 -148 2054 136 14 0 chr1_random 522852 523147 -3798399 - AluSx SINE Alu -13 299 1 29 0 0 25 chr1_random 523157 523179 -3798367 + AT_rich Low_complexity Low_complexity 17 39 0 806 178 0 7 chr1_random 523921 524056 -3797490 + AluJo SINE Alu 1 134 -178 2257 105 3 0 chr1_random 524321 524627 -3796919 - AluSp SINE Alu -6 307 1 3997 114 82 114 chr1_random 524911 526331 -3795215 - pTR5 LTR ERV1 0 2438 742 210 71 0 0 chr1_random 526438 526466 -3795080 + (T)n Simple_repeat Simple_repeat 1 28 0 268 302 0 0 chr1_random 526684 526747 -3794799 + (TATG)n Simple_repeat Simple_repeat 2 64 0 1743 149 0 48 chr1_random 526937 527246 -3794300 + AluJb SINE Alu 1 294 -18 46 19 0 0 chr1_random 527754 527807 -3793739 + AT_rich Low_complexity Low_complexity 1 53 0 24 32 0 0 chr1_random 527850 527881 -3793665 + AT_rich Low_complexity Low_complexity 1 31 0 351 204 92 49 chr1_random 528199 528341 -3793205 + L1ME4a LINE L1 5972 6119 -2 1295 198 67 11 chr1_random 529219 529517 -3792029 - Charlie1b DNA MER1_type -2239 522 199 1380 111 125 146 chr1_random 529517 529886 -3791660 + MER46B DNA MER2_type 1 236 0 1295 198 67 11 chr1_random 529886 529946 -3791600 - Charlie1b DNA MER1_type -2562 199 144 216 322 136 8 chr1_random 530174 530292 -3791254 + MIR3 SINE MIR 69 201 -7 2353 98 3 0 chr1_random 532122 532427 -3789119 - AluSp SINE Alu -7 306 1 229 333 111 5 chr1_random 532524 532731 -3788815 + L2 LINE L2 2149 2377 -937 254 237 175 0 chr1_random 532750 532864 -3788682 + L2 LINE L2 3113 3246 -67 637 283 58 5 chr1_random 533305 533510 -3788036 - MIR SINE MIR 0 262 47 773 214 124 0 chr1_random 533927 534105 -3787441 - MER3 DNA MER1_type -1 208 9 532 274 199 74 chr1_random 534106 534642 -3786904 - HAL1 LINE L1 -1409 1098 494 1387 148 72 46 chr1_random 535057 535361 -3786185 - AluJo SINE Alu 0 312 1 24 0 0 0 chr1_random 535366 535390 -3786156 + AT_rich Low_complexity Low_complexity 1 24 0 2010 139 7 0 chr1_random 535404 535699 -3785847 - AluSx SINE Alu -15 297 1 1852 94 0 0 chr1_random 536366 536600 -3784946 - AluSx SINE Alu -78 234 1 222 37 0 0 chr1_random 536685 536712 -3784834 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 189 0 0 0 chr1_random 536749 536770 -3784776 + (T)n Simple_repeat Simple_repeat 1 21 0 1959 198 20 51 chr1_random 537281 537357 -3784189 - L1M4 LINE L1 -1044 5102 5025 2252 150 36 22 chr1_random 537357 537716 -3783830 - THE1B LTR MaLR 0 364 1 1959 198 20 51 chr1_random 537716 538145 -3783401 - L1M4 LINE L1 -1121 5025 4613 713 234 0 0 chr1_random 538147 538271 -3783275 + AluJo SINE Alu 2 125 -187 2108 121 3 3 chr1_random 538280 538577 -3782969 + AluSx SINE Alu 1 297 -15 932 218 0 0 chr1_random 538692 538862 -3782684 + AluJo SINE Alu 129 298 -14 1190 239 85 3 chr1_random 538866 539267 -3782279 - L1M4 LINE L1 -1548 4598 4151 627 235 22 28 chr1_random 539315 539494 -3782052 + L1M4 LINE L1 4718 4895 -1251 474 101 0 0 chr1_random 539901 539970 -3781576 + (TTCC)n Simple_repeat Simple_repeat 1 69 0 1993 110 14 0 chr1_random 539970 540252 -3781294 - AluSg SINE Alu -24 286 1 800 320 157 55 chr1_random 540285 541423 -3780123 - L3 LINE CR1 -154 1423 170 22 0 0 0 chr1_random 542054 542076 -3779470 + AT_rich Low_complexity Low_complexity 1 22 0 6212 54 0 1 chr1_random 542504 543225 -3778321 - L1PA7 LINE L1 -7 6147 5428 1337 32 26 0 chr1_random 543225 543376 -3778170 - L1PA4 LINE L1 -1 6154 5997 398 41 0 0 chr1_random 543376 543425 -3778121 - L1PA7 LINE L1 -716 5438 5390 205 314 186 10 chr1_random 543734 543836 -3777710 - L2 LINE L2 -16 3256 3137 444 287 44 76 chr1_random 544144 544262 -3777284 - L2 LINE L2 -455 2859 2739 1781 156 23 7 chr1_random 544262 544563 -3776983 + AluSx SINE Alu 2 307 -5 444 287 44 76 chr1_random 544563 544719 -3776827 - L2 LINE L2 -575 2739 2594 578 294 61 26 chr1_random 544744 544972 -3776574 + MIR SINE MIR 14 249 -13 2268 118 0 0 chr1_random 545134 545447 -3776099 - AluSq SINE Alu 0 313 1 2338 91 0 0 chr1_random 545740 546036 -3775510 + AluY SINE Alu 1 296 -15 2043 112 0 0 chr1_random 546456 546733 -3774813 + AluSx SINE Alu 14 290 -22 351 248 80 58 chr1_random 546794 546931 -3774615 - MIR SINE MIR -56 206 67 358 295 88 47 chr1_random 546987 547180 -3774366 + MIR SINE MIR 46 246 -16 182 292 45 45 chr1_random 547393 547482 -3774064 + MIR SINE MIR 27 115 -93 230 264 94 47 chr1_random 548144 548250 -3773296 - L2 LINE L2 -17 3296 3186 2351 79 10 0 chr1_random 548360 548664 -3772882 + AluSx SINE Alu 1 307 -5 2264 102 7 7 chr1_random 549868 550173 -3771373 + AluSx SINE Alu 1 305 -7 2233 97 23 13 chr1_random 551169 551477 -3770069 - AluSx SINE Alu -1 311 1 25 31 0 0 chr1_random 551832 551864 -3769682 + AT_rich Low_complexity Low_complexity 1 32 0 25 0 0 0 chr1_random 552170 552195 -3769351 + AT_rich Low_complexity Low_complexity 1 25 0 555 238 123 33 chr1_random 552391 552635 -3768911 - L1ME LINE L1 -306 5815 5550 245 152 22 0 chr1_random 552869 552915 -3768631 + L1ME LINE L1 5388 5434 -687 387 271 99 22 chr1_random 553022 553203 -3768343 + L1ME LINE L1 5580 5774 -347 1479 175 121 36 chr1_random 553400 553732 -3767814 - MLT1A1 LTR MaLR -5 360 1 21 0 0 0 chr1_random 554223 554244 -3767302 + AT_rich Low_complexity Low_complexity 1 21 0 318 237 61 111 chr1_random 554598 554796 -3766750 + L1MC5 LINE L1 5729 5916 -1892 234 0 0 0 chr1_random 554796 554822 -3766724 + (TG)n Simple_repeat Simple_repeat 1 26 0 2312 78 0 0 chr1_random 555076 555410 -3766136 + AluY SINE Alu 1 334 0 2318 92 13 0 chr1_random 556000 556305 -3765241 - AluSp SINE Alu -2 311 3 2075 201 52 51 chr1_random 556747 557320 -3764226 - Charlie1a DNA MER1_type 0 1455 882 834 168 38 0 chr1_random 557330 557461 -3764085 - FRAM SINE Alu -45 131 1 1254 130 189 15 chr1_random 557510 557780 -3763766 - Charlie1a DNA MER1_type -580 875 559 2019 141 0 0 chr1_random 557780 558094 -3763452 - AluSx SINE Alu 0 314 1 369 256 0 12 chr1_random 558139 558221 -3763325 - Charlie1a DNA MER1_type -1023 432 352 1004 151 0 57 chr1_random 558224 558416 -3763130 + AluSc SINE Alu 115 295 -14 1283 236 52 31 chr1_random 558422 558749 -3762797 - Charlie1a DNA MER1_type -1121 334 1 2292 92 17 0 chr1_random 558944 559239 -3762307 + AluSx SINE Alu 1 300 -12 241 266 242 16 chr1_random 560834 561086 -3760460 + HAL1 LINE L1 57 365 -2142 26 30 0 0 chr1_random 562078 562111 -3759435 + AT_rich Low_complexity Low_complexity 1 33 0 316 327 152 42 chr1_random 562221 562484 -3759062 + HAL1b LINE L1 415 706 -642 1716 127 116 4 chr1_random 562656 562924 -3758622 - AluSx SINE Alu -14 298 1 1421 239 122 68 chr1_random 563014 563281 -3758265 + L1MC5 LINE L1 6542 6793 -1168 2177 99 3 0 chr1_random 563281 563593 -3757953 + AluSq SINE Alu 1 313 0 1421 239 122 68 chr1_random 563593 563962 -3757584 + L1MC5 LINE L1 6793 7244 -717 1698 180 0 33 chr1_random 563962 564267 -3757279 + AluJo SINE Alu 1 295 -17 1421 239 122 68 chr1_random 564267 564452 -3757094 + L1MC5 LINE L1 7244 7418 -543 681 194 7 36 chr1_random 564452 564614 -3756932 + AluJb SINE Alu 172 312 0 524 275 37 70 chr1_random 564615 564772 -3756774 - L1MCc LINE L1 -6140 283 137 2108 105 58 0 chr1_random 564772 565067 -3756479 - AluSx SINE Alu 0 312 1 524 275 37 70 chr1_random 565067 565182 -3756364 - L1MCc LINE L1 -6286 137 20 642 145 92 0 chr1_random 565476 565607 -3755939 + L1MB3 LINE L1 6033 6175 -8 2316 101 3 13 chr1_random 565622 565930 -3755616 + AluSq SINE Alu 1 305 -8 2195 114 3 0 chr1_random 566119 566417 -3755129 - AluSc SINE Alu -10 299 1 270 279 157 14 chr1_random 566462 566609 -3754937 + MIR3 SINE MIR 3 170 -38 230 235 118 0 chr1_random 567048 567133 -3754413 - L1MC/D LINE L1 -2020 5788 5694 26 0 0 0 chr1_random 567183 567209 -3754337 + AT_rich Low_complexity Low_complexity 1 26 0 1888 130 44 10 chr1_random 567210 567503 -3754043 - AluSx SINE Alu -8 304 2 2442 69 7 10 chr1_random 567840 568146 -3753400 - AluSp SINE Alu -8 305 1 2075 123 20 0 chr1_random 568837 569130 -3752416 - AluSx SINE Alu -13 299 1 766 240 38 76 chr1_random 569755 570023 -3751523 - MIR SINE MIR 0 262 6 1825 171 24 7 chr1_random 570438 570736 -3750810 - AluJo SINE Alu -8 304 2 260 167 0 21 chr1_random 570737 570785 -3750761 + MLT1I LTR MaLR 361 407 -2 22 70 0 0 chr1_random 570790 570833 -3750713 + AT_rich Low_complexity Low_complexity 1 43 0 1734 170 13 16 chr1_random 571539 571851 -3749695 - AluJo SINE Alu -1 311 1 295 248 45 77 chr1_random 572024 572154 -3749392 + MIR SINE MIR 30 164 -65 831 70 0 0 chr1_random 572377 572477 -3749069 + AluSg/x SINE Alu 188 287 -22 836 165 0 0 chr1_random 573693 573826 -3747720 + AluJb SINE Alu 178 310 -2 2084 118 4 0 chr1_random 574264 574543 -3747003 + AluSx SINE Alu 1 280 -32 189 0 0 0 chr1_random 574543 574564 -3746982 + (TAA)n Simple_repeat Simple_repeat 1 21 0 1827 37 0 9 chr1_random 575071 575285 -3746261 + AluY SINE Alu 1 212 -99 333 209 27 64 chr1_random 575576 575686 -3745860 - MLT1H LTR MaLR -260 289 184 497 113 0 0 chr1_random 575699 575770 -3745776 - Alu SINE Alu -7 305 235 432 0 0 0 chr1_random 575794 575842 -3745704 + (TAA)n Simple_repeat Simple_repeat 1 48 0 1995 136 7 7 chr1_random 576231 576532 -3745014 + AluSx SINE Alu 1 301 -11 343 327 161 31 chr1_random 576615 576838 -3744708 - L2 LINE L2 -194 3078 2827 923 79 0 0 chr1_random 576928 577042 -3744504 + MER57B LTR ERV1 1 114 -320 2037 133 7 10 chr1_random 577042 577351 -3744195 + AluSq SINE Alu 1 308 -5 2130 106 10 0 chr1_random 577887 578180 -3743366 + AluSx SINE Alu 1 296 -16 422 126 35 11 chr1_random 578499 578586 -3742960 - LTR33A LTR ERVL -27 496 408 2198 88 17 14 chr1_random 578673 578967 -3742579 + AluSg SINE Alu 1 295 -15 367 284 52 0 chr1_random 579359 579514 -3742032 - L1MEd LINE L1 -4669 1641 1479 261 83 0 0 chr1_random 579549 579585 -3741961 + (TTTTG)n Simple_repeat Simple_repeat 2 37 0 1194 142 0 0 chr1_random 579589 579765 -3741781 - AluSg/x SINE Alu -43 269 94 480 106 0 0 chr1_random 579947 580013 -3741533 - AluJ/FLAM SINE Alu -245 67 2 493 164 36 0 chr1_random 580036 580176 -3741370 + CT-rich Low_complexity Low_complexity 2 146 0 805 295 58 69 chr1_random 580191 580341 -3741205 - L1MEd LINE L1 -4862 1257 1107 2226 89 3 0 chr1_random 580341 580678 -3740868 + AluSp SINE Alu 1 338 0 805 295 58 69 chr1_random 580678 581338 -3740208 - L1MEd LINE L1 -5012 1107 555 943 191 82 10 chr1_random 582088 582282 -3739264 - MER6B DNA MER2_type 0 210 3 263 123 246 0 chr1_random 582320 582377 -3739169 + AluS SINE Alu 1 71 -232 1884 117 3 14 chr1_random 582377 582660 -3738886 + AluSx SINE Alu 32 311 -1 434 196 35 28 chr1_random 582668 582811 -3738735 + L1ME4a LINE L1 5751 5894 -227 1564 151 23 0 chr1_random 582826 583084 -3738462 + L1MC1 LINE L1 6069 6332 -1 2131 126 7 3 chr1_random 583107 583416 -3738130 + AluSx SINE Alu 1 310 -2 1074 146 24 0 chr1_random 583416 583581 -3737965 + AluSq SINE Alu 134 302 -11 479 275 111 14 chr1_random 783709 784069 -3537477 + L1ME LINE L1 556 950 -5120 862 142 0 83 chr1_random 784069 784238 -3537308 - MLT1E3 LTR MaLR 0 624 470 810 282 38 28 chr1_random 784387 784674 -3536872 - LTR8 LTR ERV1 0 691 402 1099 192 5 10 chr1_random 785049 785247 -3536299 + MER72 LTR ERV1 3 199 -523 39 50 0 0 chr1_random 785250 785310 -3536236 + AT_rich Low_complexity Low_complexity 1 60 0 628 209 0 0 chr1_random 785312 785427 -3536119 - FLAM_C SINE Alu -18 115 1 2017 154 52 0 chr1_random 785427 785757 -3535789 + MER72 LTR ERV1 185 531 -191 1217 126 5 0 chr1_random 785804 785994 -3535552 + MER72 LTR ERV1 528 718 -4 4702 108 24 22 chr1_random 786231 786408 -3535138 - L1PA16 LINE L1 -11 6155 5980 2468 89 0 0 chr1_random 786408 786711 -3534835 - AluSg SINE Alu -7 303 1 4702 108 24 22 chr1_random 786711 787273 -3534273 - L1PA16 LINE L1 -186 5980 5414 1940 118 56 0 chr1_random 787374 787695 -3533851 - HERVH LTR ERV1 -53 7660 7322 1364 120 23 9 chr1_random 787693 787910 -3533636 - HERVH LTR ERV1 -1894 5819 5600 * 5696 104 1 1 chr1_random 787911 788710 -3532836 - HERVH LTR ERV1 -2564 5149 4351 1204 203 82 23 chr1_random 790508 790814 -3530732 - MER2 DNA MER2_type 0 345 22 29 60 0 0 chr1_random 791183 791233 -3530313 + AT_rich Low_complexity Low_complexity 1 50 0 842 211 101 5 chr1_random 791895 792094 -3529452 + MER21B LTR ERV1 605 822 -41 3652 98 5 74 chr1_random 792231 792842 -3528704 - MER4B LTR ERV1 0 610 42 343 109 0 0 chr1_random 792971 793017 -3528529 - MLT1C LTR MaLR -421 46 1 2646 233 52 35 chr1_random 793288 794069 -3527477 - L1ME1 LINE L1 -7 6159 5365 213 200 0 0 chr1_random 794170 794210 -3527336 + GA-rich Low_complexity Low_complexity 1 40 0 255 320 131 25 chr1_random 794528 794650 -3526896 + MIR SINE MIR 7 141 -121 1138 93 0 7 chr1_random 797319 797469 -3524077 + AluY SINE Alu 1 149 -162 237 311 46 33 chr1_random 797671 797822 -3523724 + MER5A DNA MER1_type 13 165 -24 2577 72 125 5 chr1_random 797901 798301 -3523245 + LTR7 LTR ERV1 1 448 -2 6881 136 14 10 chr1_random 798303 799420 -3522126 + HERVH LTR ERV1 1 1122 -6591 300 120 0 0 chr1_random 799601 799651 -3521895 + (A)n Simple_repeat Simple_repeat 1 50 0 225 220 0 0 chr1_random 801457 801507 -3520039 - L1MC4 LINE L1 -1340 6702 6653 256 284 0 0 chr1_random 801512 801600 -3519946 - L1MC4 LINE L1 -1341 6701 6614 316 206 39 39 chr1_random 801654 801834 -3519712 + (TA)n Simple_repeat Simple_repeat 1 180 0 1828 243 50 59 chr1_random 801920 802479 -3519067 - MLT2B3 LTR ERVL 0 554 1 303 151 0 116 chr1_random 802866 802984 -3518562 - AluS SINE Alu 0 333 226 328 141 0 28 chr1_random 803111 803182 -3518364 + L1PA16 LINE L1 6098 6166 0 1607 106 0 0 chr1_random 804041 804278 -3517268 - L1PA13 LINE L1 -4 6159 5923 26 30 0 0 chr1_random 804530 804563 -3516983 + AT_rich Low_complexity Low_complexity 1 33 0 410 309 131 0 chr1_random 805045 805220 -3516326 - MIR SINE MIR 0 262 65 182 273 0 0 chr1_random 805339 805383 -3516163 + L2 LINE L2 3209 3252 -20 28 61 0 0 chr1_random 805397 805446 -3516100 + AT_rich Low_complexity Low_complexity 1 49 0 2147 152 30 8 chr1_random 805804 806166 -3515380 + THE1C LTR MaLR 6 375 0 3330 146 75 0 chr1_random 806166 806743 -3514803 + THE1C-int LTR MaLR 1 620 -960 433 229 0 19 chr1_random 808394 808499 -3513047 + MIR SINE MIR 129 231 -31 1418 200 75 9 chr1_random 808860 809195 -3512351 - MER31A LTR ERV1 -43 442 86 1533 87 10 5 chr1_random 809321 809529 -3512017 - AluSc SINE Alu -100 209 1 325 83 0 0 chr1_random 809797 809845 -3511701 + L1MD2 LINE L1 6295 6342 -17 24 53 0 0 chr1_random 809855 809893 -3511653 + AT_rich Low_complexity Low_complexity 1 38 0 261 292 196 31 chr1_random 809985 810245 -3511301 - L2 LINE L2 -82 3231 2929 305 324 0 9 chr1_random 811107 811212 -3510334 - MIR SINE MIR -64 198 95 369 293 94 28 chr1_random 811335 811516 -3510030 - MLT1K LTR MaLR -89 499 307 555 331 88 26 chr1_random 811681 812022 -3509524 + L2 LINE L2 2508 2869 -445 188 277 138 11 chr1_random 812129 812223 -3509323 + MIR SINE MIR 112 217 -45 1022 193 5 0 chr1_random 812278 812465 -3509081 - MER41C LTR ERV1 0 554 367 3821 176 83 21 chr1_random 812565 814306 -3507240 - L1PBa LINE L1 -4861 2002 4 477 324 39 42 chr1_random 814997 815303 -3506243 + L1MEc LINE L1 333 637 -5759 536 210 32 146 chr1_random 815367 815515 -3506031 - MER20 DNA MER1_type -24 195 78 2367 77 0 3 chr1_random 815515 815812 -3505734 + AluY SINE Alu 1 296 -15 536 210 32 146 chr1_random 815812 815882 -3505664 - MER20 DNA MER1_type -141 78 2 798 307 67 49 chr1_random 815886 816765 -3504781 + L1MEc LINE L1 635 1495 -4720 232 26 0 51 chr1_random 816789 816828 -3504718 + (TTTTA)n Simple_repeat Simple_repeat 2 38 0 1195 154 70 0 chr1_random 816843 817044 -3504502 - AluSg1 SINE Alu -94 215 1 319 265 39 28 chr1_random 817074 817255 -3504291 + L1MEc LINE L1 1598 1780 -4616 38 39 0 0 chr1_random 817287 817339 -3504207 + AT_rich Low_complexity Low_complexity 1 52 0 570 257 34 6 chr1_random 817650 817825 -3503721 + L1MEc LINE L1 3584 3763 -2452 6224 50 0 0 chr1_random 818092 818859 -3502687 + L1PA4 LINE L1 5388 6154 -1 21 36 0 0 chr1_random 820366 820394 -3501152 + AT_rich Low_complexity Low_complexity 1 28 0 2405 93 0 0 chr1_random 821231 821542 -3500004 + AluY SINE Alu 1 311 0 284 289 13 0 chr1_random 821546 821622 -3499924 + MLT1I LTR MaLR 323 399 -10 21 0 0 0 chr1_random 822071 822092 -3499454 + AT_rich Low_complexity Low_complexity 1 21 0 353 346 56 45 chr1_random 822613 822968 -3498578 + MLT1I LTR MaLR 3 361 -48 603 241 0 15 chr1_random 824424 824557 -3496989 - MLT1A1 LTR MaLR 0 365 235 658 322 62 42 chr1_random 824660 825317 -3496229 - L2 LINE L2 0 3313 2644 452 273 16 0 chr1_random 825320 825448 -3496098 + MIR SINE MIR 128 257 -5 21 0 0 0 chr1_random 825981 826002 -3495544 + AT_rich Low_complexity Low_complexity 1 21 0 710 291 119 43 chr1_random 826620 827146 -3494400 + L2 LINE L2 2616 3198 -115 252 0 0 0 chr1_random 827146 827174 -3494372 + (TG)n Simple_repeat Simple_repeat 2 29 0 710 291 119 43 chr1_random 827174 827296 -3494250 + L2 LINE L2 3198 3309 -4 2017 136 0 0 chr1_random 827551 827865 -3493681 - AluSx SINE Alu 0 316 3 4902 206 34 22 chr1_random 828096 829471 -3492075 + L1MC1 LINE L1 4942 6332 -1 358 143 0 0 chr1_random 829527 829597 -3491949 - L1MA3 LINE L1 0 6305 6236 1461 260 52 21 chr1_random 829616 830196 -3491350 + L1M4 LINE L1 4618 5215 -931 419 306 51 6 chr1_random 830258 830415 -3491131 - MIR SINE MIR -13 249 86 2478 69 0 0 chr1_random 831072 831376 -3490170 + AluY SINE Alu 1 304 -7 5205 156 27 22 chr1_random 832426 833319 -3488227 + THE1C-int LTR MaLR 684 1580 0 2219 138 27 14 chr1_random 833319 833689 -3487857 + THE1C LTR MaLR 1 375 0 32 26 0 0 chr1_random 833845 833884 -3487662 + AT_rich Low_complexity Low_complexity 1 39 0 184 215 11 11 chr1_random 835497 835590 -3485956 + (TA)n Simple_repeat Simple_repeat 1 93 0 21 36 0 0 chr1_random 835877 835905 -3485641 + AT_rich Low_complexity Low_complexity 1 28 0 2572 109 22 3 chr1_random 836294 836662 -3484884 + THE1C LTR MaLR 1 375 0 821 138 69 0 chr1_random 836679 836860 -3484686 + THE1C-int LTR MaLR 30 156 -1424 251 82 102 0 chr1_random 836860 836909 -3484637 + THE1C-int LTR MaLR 100 153 -1427 5490 167 17 15 chr1_random 837009 837986 -3483560 + THE1C-int LTR MaLR 587 1565 -15 4300 249 26 41 chr1_random 837981 839570 -3481976 - L1MEc LINE L1 -1894 4252 2688 * 3263 187 22 38 chr1_random 839642 840910 -3480636 + L1PA16 LINE L1 4604 5844 -322 203 233 146 48 chr1_random 841247 841350 -3480196 + L2 LINE L2 3180 3292 -21 198 71 0 0 chr1_random 842821 842849 -3478697 + (CA)n Simple_repeat Simple_repeat 2 29 0 215 271 157 81 chr1_random 842901 842987 -3478559 + MIR SINE MIR 7 85 -177 2025 129 0 0 chr1_random 842987 843317 -3478229 - AluSx SINE Alu 0 332 3 215 271 157 81 chr1_random 843317 843465 -3478081 + MIR SINE MIR 85 260 -2 379 229 72 39 chr1_random 844178 844360 -3477186 - L1MEc LINE L1 -3779 2404 2203 321 243 66 59 chr1_random 844339 844475 -3477071 - L1ME1 LINE L1 -123 6043 5907 * 1053 267 63 16 chr1_random 844575 844942 -3476604 - L1ME1 LINE L1 -466 5700 5317 481 269 122 43 chr1_random 844989 845480 -3476066 - L1ME1 LINE L1 -2595 3551 3022 * 1971 202 97 36 chr1_random 845470 846050 -3475496 - L1MA7 LINE L1 0 6291 5677 494 246 86 4 chr1_random 846072 846316 -3475230 - L1ME1 LINE L1 -3142 3004 2741 2072 191 34 24 chr1_random 846372 846836 -3474710 - L1MB2 LINE L1 -21 6150 5679 207 0 0 0 chr1_random 846857 846880 -3474666 + (TG)n Simple_repeat Simple_repeat 2 24 0 23 0 0 0 chr1_random 846953 846976 -3474570 + AT_rich Low_complexity Low_complexity 1 23 0 471 316 42 29 chr1_random 847689 847827 -3473719 + L2 LINE L2 2120 2255 -1059 2156 212 20 67 chr1_random 847827 848365 -3473181 - MLT2B2 LTR ERVL 0 515 3 471 316 42 29 chr1_random 848365 848533 -3473013 + L2 LINE L2 2255 2430 -884 363 272 61 18 chr1_random 848530 848644 -3472902 - L2 LINE L2 -1 3312 3194 * 25 51 0 0 chr1_random 849046 849085 -3472461 + AT_rich Low_complexity Low_complexity 1 39 0 322 314 157 22 chr1_random 849198 849421 -3472125 - MLT1J LTR MaLR -174 337 85 483 60 0 0 chr1_random 849574 849641 -3471905 + (TATG)n Simple_repeat Simple_repeat 2 68 0 1992 129 0 3 chr1_random 849641 849930 -3471616 - AluSq SINE Alu -25 288 1 2277 143 57 7 chr1_random 850526 850932 -3470614 - MSTA LTR MaLR -2 426 1 1340 135 5 14 chr1_random 851311 851519 -3470027 + AluSg/x SINE Alu 101 306 -6 1914 70 0 0 chr1_random 851759 852001 -3469545 + AluY SINE Alu 47 288 -23 431 320 143 20 chr1_random 852165 852459 -3469087 + HAL1b LINE L1 115 444 -904 21 0 0 0 chr1_random 853096 853117 -3468429 + AT_rich Low_complexity Low_complexity 1 21 0 1078 253 111 11 chr1_random 853555 853915 -3467631 + MSTD LTR MaLR 1 396 0 327 25 0 0 chr1_random 854600 854640 -3466906 + (TC)n Simple_repeat Simple_repeat 1 40 0 288 0 0 0 chr1_random 854639 854671 -3466875 + (CA)n Simple_repeat Simple_repeat 1 32 0 * 258 136 0 0 chr1_random 854951 854995 -3466551 + (CA)n Simple_repeat Simple_repeat 2 45 0 21 57 0 0 chr1_random 855685 855720 -3465826 + AT_rich Low_complexity Low_complexity 1 35 0 538 104 83 0 chr1_random 855914 856010 -3465536 + L1MB3 LINE L1 6078 6181 -2 273 264 44 22 chr1_random 856261 856352 -3465194 + MLT1H LTR MaLR 454 546 -3 38 22 0 0 chr1_random 856740 856785 -3464761 + AT_rich Low_complexity Low_complexity 1 45 0 978 200 26 0 chr1_random 857155 857350 -3464196 - MLT1C LTR MaLR 0 467 268 34 42 0 0 chr1_random 857736 857784 -3463762 + AT_rich Low_complexity Low_complexity 1 48 0 1350 148 43 12 chr1_random 858559 858815 -3462731 - L1MA8 LINE L1 -17 6274 6011 3117 42 3 0 chr1_random 858869 859250 -3462296 + L1PA3 LINE L1 5769 6150 -5 1390 238 34 3 chr1_random 859256 859634 -3461912 - L1M4 LINE L1 -1503 4643 4254 195 293 0 17 chr1_random 862048 862106 -3459440 + L2 LINE L2 3255 3311 -2 1387 143 14 0 chr1_random 862596 862805 -3458741 - MER41C LTR ERV1 -342 212 1 309 325 53 20 chr1_random 862825 862976 -3458570 + L2 LINE L2 3156 3311 -2 2012 120 52 60 chr1_random 863499 863866 -3457680 + THE1B LTR MaLR 1 364 0 11214 107 4 2 chr1_random 863866 865443 -3456103 + THE1B-int LTR MaLR 1 1580 0 1951 141 51 25 chr1_random 865443 865798 -3455748 + THE1B LTR MaLR 1 364 0 452 301 92 68 chr1_random 865927 866309 -3455237 + MLT1L LTR MaLR 222 612 -3 1852 156 49 3 chr1_random 866602 866930 -3454616 + MER61A LTR ERV1 1 343 0 21 57 0 0 chr1_random 867319 867354 -3454192 + AT_rich Low_complexity Low_complexity 1 35 0 1995 122 11 0 chr1_random 868258 868545 -3453001 + AluSx SINE Alu 1 290 -22 499 259 45 15 chr1_random 868640 868841 -3452705 - L1ME3 LINE L1 -22 6140 5934 4857 214 46 25 chr1_random 869505 871665 -3449881 - L1MB1 LINE L1 0 6168 3961 2192 138 3 3 chr1_random 871674 872035 -3449511 - L1PB1 LINE L1 0 6151 5791 216 200 0 0 chr1_random 872035 872085 -3449461 + (TATATG)n Simple_repeat Simple_repeat 6 55 0 226 127 18 18 chr1_random 872087 872142 -3449404 + LTR66 LTR ERVL 382 436 -174 266 247 25 0 chr1_random 872173 872254 -3449292 + L1MC4 LINE L1 6614 6696 -1346 * 737 205 47 11 chr1_random 872251 872441 -3449105 - L1M4 LINE L1 -2023 4123 3927 241 127 13 51 chr1_random 872548 872627 -3448919 + (TA)n Simple_repeat Simple_repeat 1 76 0 12634 211 16 10 chr1_random 872633 876034 -3445512 - L1P5 LINE L1 -360 6507 3083 25008 56 9 1 chr1_random 876052 880117 -3441429 - L1PA5 LINE L1 -7 6147 2048 3638 84 2 2 chr1_random 880104 880602 -3440944 + L1P LINE L1 1345 1842 -4304 * 6515 26 1 0 chr1_random 880627 881391 -3440155 - L1PA3 LINE L1 0 6155 5391 * 8742 31 0 0 chr1_random 881390 882457 -3439089 + L1PA3 LINE L1 4334 5400 -746 1381 109 0 5 chr1_random 882454 882655 -3438891 + L1P LINE L1 1832 2031 -4115 * 4467 123 87 25 chr1_random 882663 883560 -3437986 - L1P5 LINE L1 -3776 3086 2133 2394 119 30 0 chr1_random 884087 884456 -3437090 - L1PA11 LINE L1 -5 6169 5790 264 281 140 18 chr1_random 884647 884761 -3436785 + L2 LINE L2 3177 3304 -9 31 82 0 0 chr1_random 886179 886252 -3435294 + AT_rich Low_complexity Low_complexity 1 73 0 271 266 43 86 chr1_random 886567 886626 -3434920 - L1ME2 LINE L1 -27 6137 6077 1869 250 33 11 chr1_random 886626 887086 -3434460 + MER70A LTR ERVL 1 470 -2 271 266 43 86 chr1_random 887086 887165 -3434381 - L1ME2 LINE L1 -87 6077 6005 920 145 6 0 chr1_random 887240 887399 -3434147 - L1MA6 LINE L1 -1 6299 6140 11994 208 48 12 chr1_random 887414 888111 -3433435 - L1MA6 LINE L1 -751 5395 4724 4375 101 57 1 chr1_random 888111 888763 -3432783 - LTR12 LTR ERV1 0 688 1 11994 208 48 12 chr1_random 888763 888861 -3432685 - L1MA6 LINE L1 -1422 4724 4631 254 29 29 0 chr1_random 888861 888896 -3432650 + (TTTG)n Simple_repeat Simple_repeat 1 36 0 1780 146 0 4 chr1_random 888900 889174 -3432372 - AluSx SINE Alu -37 275 3 11994 208 48 12 chr1_random 889174 891397 -3430149 - L1MA6 LINE L1 -1517 4629 2322 250 35 70 18 chr1_random 891514 891571 -3429975 + (TATAA)n Simple_repeat Simple_repeat 5 64 0 1717 158 7 18 chr1_random 891786 892070 -3429476 + AluSx SINE Alu 1 281 -31 180 0 0 0 chr1_random 892073 892093 -3429453 + (TAAA)n Simple_repeat Simple_repeat 1 20 0 300 315 108 0 chr1_random 892161 892291 -3429255 - L2 LINE L2 -1 3312 3169 221 290 130 38 chr1_random 892857 892988 -3428558 + MIR SINE MIR 15 157 -105 * 341 279 36 9 chr1_random 892987 893098 -3428448 + L2 LINE L2 3195 3308 -5 2277 157 31 14 chr1_random 893686 894107 -3427439 - MSTA LTR MaLR 0 428 1 8144 207 17 16 chr1_random 894119 895750 -3425796 - MSTA-int LTR MaLR -18 1633 1 2665 147 12 0 chr1_random 895750 896173 -3425373 - MSTA LTR MaLR 0 428 1 22 0 0 0 chr1_random 896275 896297 -3425249 + AT_rich Low_complexity Low_complexity 1 22 0 27 29 0 0 chr1_random 896317 896351 -3425195 + AT_rich Low_complexity Low_complexity 1 34 0 35 92 0 0 chr1_random 896379 896477 -3425069 + AT_rich Low_complexity Low_complexity 1 98 0 1397 231 82 14 chr1_random 896939 897478 -3424068 + L1M2 LINE L1 2492 3063 -4503 576 246 127 8 chr1_random 897479 897876 -3423670 - L1 LINE L1 -3728 2654 2204 221 69 115 0 chr1_random 897876 897963 -3423583 + (TA)n Simple_repeat Simple_repeat 2 98 0 8053 239 68 15 chr1_random 897999 898286 -3423260 + L1M2 LINE L1 2912 3182 -4383 2447 39 0 3 chr1_random 898286 898591 -3422955 + L1PA2 LINE L1 5851 6154 -1 8053 239 68 15 chr1_random 898591 901289 -3420257 + L1M2 LINE L1 3182 5901 -1664 1037 172 15 33 chr1_random 901290 901587 -3419959 + L1M2 LINE L1 6576 6870 -764 470 295 2 0 chr1_random 901642 901776 -3419770 - MER5A DNA MER1_type -12 166 31 623 225 165 34 chr1_random 901789 902016 -3419530 - MLT1D LTR MaLR -57 448 188 324 102 0 0 chr1_random 902016 902065 -3419481 + (CA)n Simple_repeat Simple_repeat 1 49 0 629 168 0 0 chr1_random 902087 902194 -3419352 - MLT1D LTR MaLR -260 245 139 21 0 0 0 chr1_random 903224 903245 -3418301 + AT_rich Low_complexity Low_complexity 1 21 0 274 217 14 14 chr1_random 903481 903550 -3417996 + AluY SINE Alu 68 136 -165 42 65 0 0 chr1_random 903582 903659 -3417887 + AT_rich Low_complexity Low_complexity 1 77 0 191 261 92 67 chr1_random 903850 903969 -3417577 + L2 LINE L2 3138 3259 -13 2150 126 3 0 chr1_random 904101 904402 -3417144 + AluSx SINE Alu 1 302 -10 252 360 118 7 chr1_random 904451 904587 -3416959 - L2 LINE L2 -8 3264 3114 921 188 10 5 chr1_random 904625 904839 -3416707 + L1M2 LINE L1 5459 5673 -624 324 0 0 0 chr1_random 905373 905409 -3416137 + (TCTA)n Simple_repeat Simple_repeat 3 38 0 182 36 0 36 chr1_random 906477 906505 -3415041 + (CAAAA)n Simple_repeat Simple_repeat 2 28 0 1040 228 55 1 chr1_random 906698 907157 -3414389 + MER34 LTR ERV1 27 540 -2 212 369 92 46 chr1_random 907180 907310 -3414236 + L2 LINE L2 3123 3258 -14 25 31 0 0 chr1_random 907676 907708 -3413838 + AT_rich Low_complexity Low_complexity 1 32 0 1025 226 17 97 chr1_random 907923 908272 -3413274 + L1MC4 LINE L1 6759 7079 -963 1361 240 109 28 chr1_random 908279 908745 -3412801 + L1MC4 LINE L1 7244 7747 -295 647 323 78 49 chr1_random 908770 909339 -3412207 - MLT1G LTR MaLR -6 584 6 1197 204 7 15 chr1_random 909340 909609 -3411937 + L1PA16 LINE L1 5897 6163 -3 524 254 0 0 chr1_random 909643 909769 -3411777 + L1MC4 LINE L1 7777 7902 -140 271 285 18 80 chr1_random 910455 910580 -3410966 + MIR SINE MIR 45 157 -67 1664 200 0 0 chr1_random 910639 910939 -3410607 + AluJb SINE Alu 1 300 -12 2314 65 0 29 chr1_random 911333 911640 -3409906 + AluY SINE Alu 1 298 -13 988 198 83 27 chr1_random 911703 912014 -3409532 - MER33 DNA MER1_type -5 319 1 239 141 74 8 chr1_random 912014 912135 -3409411 + (TA)n Simple_repeat Simple_repeat 2 130 0 306 50 0 0 chr1_random 912363 912403 -3409143 + (TG)n Simple_repeat Simple_repeat 1 40 0 25 31 0 0 chr1_random 913369 913401 -3408145 + AT_rich Low_complexity Low_complexity 1 32 0 819 348 27 27 chr1_random 913559 914005 -3407541 + ERVL LTR ERVL 276 721 -5043 1784 312 63 56 chr1_random 914068 915289 -3406257 + ERVL LTR ERVL 891 2120 -3644 2185 287 62 39 chr1_random 915294 916199 -3405347 + ERVL LTR ERVL 3589 4514 -1250 1016 328 64 24 chr1_random 916319 916865 -3404681 + ERVL LTR ERVL 4687 5254 -510 574 301 129 36 chr1_random 917299 917904 -3403642 + MLT2F LTR ERVL 3 663 0 247 303 40 0 chr1_random 919554 919630 -3401916 - MIR3 SINE MIR -29 179 101 1308 243 40 23 chr1_random 920177 920527 -3401019 - MLT1A1 LTR MaLR 0 365 10 1862 161 0 3 chr1_random 920608 920906 -3400640 + AluSq SINE Alu 5 301 -12 866 145 6 17 chr1_random 920915 921094 -3400452 + GA-rich Low_complexity Low_complexity 4 180 0 243 417 39 8 chr1_random 921785 922044 -3399502 - L2 LINE L2 -195 3077 2811 328 288 72 36 chr1_random 922424 922563 -3398983 + MLT1J2 LTR MaLR 267 410 -40 369 326 101 50 chr1_random 923270 923687 -3397859 + L2 LINE L2 2836 3273 -40 424 350 37 30 chr1_random 923697 923997 -3397549 + MLT1L LTR MaLR 1 302 -313 2357 74 7 0 chr1_random 924151 924460 -3397086 + AluY SINE Alu 1 311 0 183 182 0 0 chr1_random 924546 924579 -3396967 + L2 LINE L2 3280 3312 -1 4322 157 23 82 chr1_random 925413 926118 -3395428 + L1MC1 LINE L1 5447 6085 -248 2065 144 0 0 chr1_random 926118 926423 -3395123 + AluSx SINE Alu 1 305 -7 4322 157 23 82 chr1_random 926423 926659 -3394887 + L1MC1 LINE L1 6085 6333 0 21 0 0 0 chr1_random 927170 927191 -3394355 + AT_rich Low_complexity Low_complexity 1 21 0 210 357 31 31 chr1_random 927378 927507 -3394039 + MIR3 SINE MIR 48 176 -32 2570 53 0 0 chr1_random 929465 929768 -3391778 + AluY SINE Alu 1 303 -8 366 255 60 54 chr1_random 930106 930255 -3391291 - MLT1H LTR MaLR 0 549 400 28 29 0 0 chr1_random 931347 931382 -3390164 + AT_rich Low_complexity Low_complexity 1 35 0 329 435 8 4 chr1_random 931383 931629 -3389917 - L3 LINE CR1 -767 810 564 21 0 0 0 chr1_random 931948 931969 -3389577 + AT_rich Low_complexity Low_complexity 1 21 0 701 124 28 34 chr1_random 933287 933464 -3388082 + CT-rich Low_complexity Low_complexity 4 179 0 1387 250 37 0 chr1_random 934004 934356 -3387190 + MLT1A1 LTR MaLR 1 365 0 237 352 11 0 chr1_random 934785 934873 -3386673 + L2 LINE L2 3221 3309 -4 1731 121 32 0 chr1_random 935461 935710 -3385836 + AluSg SINE Alu 1 257 -53 1146 219 8 104 chr1_random 935710 935980 -3385566 + L1ME3 LINE L1 5516 5742 -422 2197 112 0 3 chr1_random 935980 936292 -3385254 + AluSx SINE Alu 1 311 -1 1146 219 8 104 chr1_random 936292 936395 -3385151 + L1ME3 LINE L1 5742 5853 -311 989 254 17 9 chr1_random 936395 936627 -3384919 + MER76 LTR ERV 1 234 -454 349 274 88 71 chr1_random 936677 936973 -3384573 + MER76 LTR ERV 355 655 -33 531 220 45 123 chr1_random 936996 937264 -3384282 + L1ME3 LINE L1 5908 6154 -8 1839 225 15 32 chr1_random 940003 940532 -3381014 - L1M4 LINE L1 -1046 5598 5079 283 250 31 0 chr1_random 940537 940633 -3380913 - L1M4 LINE L1 -3675 2969 2871 468 35 0 0 chr1_random 940636 940694 -3380852 + (TA)n Simple_repeat Simple_repeat 1 58 0 410 262 50 42 chr1_random 940740 941061 -3380485 - L1M4 LINE L1 -3796 2848 2520 21 57 0 0 chr1_random 941116 941151 -3380395 + AT_rich Low_complexity Low_complexity 1 35 0 594 275 13 0 chr1_random 941182 941331 -3380215 + MLT1B LTR MaLR 8 158 -216 219 114 0 0 chr1_random 941333 941368 -3380178 + (A)n Simple_repeat Simple_repeat 1 35 0 634 284 11 16 chr1_random 941405 941595 -3379951 + MLT1B LTR MaLR 202 390 0 243 285 22 51 chr1_random 941609 941746 -3379800 - L1M4 LINE L1 -4227 2419 2287 5208 237 34 49 chr1_random 941754 943705 -3377841 - L1M4 LINE L1 -4700 1946 15 376 347 13 37 chr1_random 945385 945588 -3375958 + MIR SINE MIR 13 215 -47 182 37 37 0 chr1_random 945611 945638 -3375908 + (TCTA)n Simple_repeat Simple_repeat 3 30 0 3575 161 30 28 chr1_random 946165 946431 -3375115 + L1M2 LINE L1 4656 4920 -1380 2007 121 0 4 chr1_random 946431 946746 -3374800 + AluSc SINE Alu 1 314 0 3575 161 30 28 chr1_random 946746 947616 -3373930 + L1M2 LINE L1 4920 5786 -514 29 0 0 0 chr1_random 950233 950262 -3371284 + AT_rich Low_complexity Low_complexity 1 29 0 524 318 122 4 chr1_random 950615 950870 -3370676 + MLT1H LTR MaLR 1 285 -264 265 376 11 0 chr1_random 950887 950980 -3370566 + MLT1H LTR MaLR 256 349 -200 23 0 0 0 chr1_random 950996 951019 -3370527 + AT_rich Low_complexity Low_complexity 1 23 0 204 247 59 71 chr1_random 951128 951213 -3370333 + L2 LINE L2 3230 3313 0 763 108 108 0 chr1_random 951313 951442 -3370104 + AluSx SINE Alu 47 189 -123 22 0 0 0 chr1_random 951495 951517 -3370029 + AT_rich Low_complexity Low_complexity 1 22 0 27 29 0 0 chr1_random 951854 951888 -3369658 + AT_rich Low_complexity Low_complexity 1 34 0 23 33 0 0 chr1_random 952218 952248 -3369298 + AT_rich Low_complexity Low_complexity 1 30 0 906 250 141 43 chr1_random 953477 953853 -3367693 - MER77 LTR ERV1 -8 597 185 323 44 22 0 chr1_random 955015 955060 -3366486 + (TAGA)n Simple_repeat Simple_repeat 1 46 0 21 0 0 0 chr1_random 957168 957189 -3364357 + AT_rich Low_complexity Low_complexity 1 21 0 2149 48 39 32 chr1_random 957310 957619 -3363927 + AluY SINE Alu 1 311 0 303 278 149 36 chr1_random 958012 958206 -3363340 - MIR SINE MIR 0 262 47 208 386 45 8 chr1_random 958576 958708 -3362838 - L2 LINE L2 0 3272 3136 244 156 22 0 chr1_random 958798 958843 -3362703 - MLT2F LTR ERVL 0 663 618 930 296 74 60 chr1_random 958852 959352 -3362194 - MLT2F LTR ERVL -156 507 1 24 0 0 0 chr1_random 959935 959959 -3361587 + AT_rich Low_complexity Low_complexity 1 24 0 371 313 87 43 chr1_random 960010 960240 -3361306 + MIR SINE MIR 2 241 -21 693 161 0 36 chr1_random 960389 960526 -3361020 + L1MA9 LINE L1 5836 5967 -345 268 241 23 23 chr1_random 961041 961174 -3360372 + (TA)n Simple_repeat Simple_repeat 2 134 0 29 60 0 0 chr1_random 961342 961392 -3360154 + AT_rich Low_complexity Low_complexity 1 50 0 3019 161 35 57 chr1_random 962203 962868 -3358678 - L1MA9 LINE L1 -4 6308 5659 2279 139 7 42 chr1_random 962874 963306 -3358240 + L1MA9 LINE L1 5254 5670 -642 544 221 0 84 chr1_random 963684 963709 -3357837 + MER82 DNA MER2_type 7 33 -620 2040 111 10 3 chr1_random 963709 964006 -3357540 - AluSq SINE Alu -14 299 1 544 221 0 84 chr1_random 964006 964111 -3357435 + MER82 DNA MER2_type 33 126 -527 1798 254 13 18 chr1_random 964562 965015 -3356531 + MER82 DNA MER2_type 202 652 -1 22 0 0 0 chr1_random 965044 965066 -3356480 + AT_rich Low_complexity Low_complexity 1 22 0 474 323 36 26 chr1_random 966048 966240 -3355306 + MIR SINE MIR 11 204 -58 302 380 16 47 chr1_random 966413 966542 -3355004 - MIR SINE MIR -67 141 17 32 0 0 0 chr1_random 966820 966852 -3354694 + AT_rich Low_complexity Low_complexity 1 32 0 30 27 0 0 chr1_random 969123 969160 -3352386 + AT_rich Low_complexity Low_complexity 1 37 0 2539 61 0 6 chr1_random 969714 970042 -3351504 - L1PA7 LINE L1 -1 6153 5828 269 308 151 7 chr1_random 970391 970537 -3351009 + L2 LINE L2 3106 3272 0 39 38 0 0 chr1_random 971136 971189 -3350357 + AT_rich Low_complexity Low_complexity 1 53 0 1760 196 58 6 chr1_random 971569 971916 -3349630 + MLT1A1 LTR MaLR 1 365 0 23 68 0 0 chr1_random 971977 972021 -3349525 + AT_rich Low_complexity Low_complexity 1 44 0 229 224 0 0 chr1_random 972051 972100 -3349446 + (TA)n Simple_repeat Simple_repeat 2 50 0 738 234 6 0 chr1_random 973372 973530 -3348016 - AluJb SINE Alu -15 297 139 1758 182 8 32 chr1_random 973820 974193 -3347353 + MLT1A1 LTR MaLR 2 365 0 24 32 0 0 chr1_random 974691 974722 -3346824 + AT_rich Low_complexity Low_complexity 1 31 0 40 67 0 0 chr1_random 975401 975476 -3346070 + AT_rich Low_complexity Low_complexity 1 75 0 360 0 0 0 chr1_random 975673 975713 -3345833 + (TC)n Simple_repeat Simple_repeat 2 41 0 324 0 0 0 chr1_random 975712 975748 -3345798 + (TA)n Simple_repeat Simple_repeat 1 36 0 * 2073 95 0 30 chr1_random 975749 976053 -3345493 - AluSx SINE Alu -17 295 1 444 333 93 39 chr1_random 976099 976486 -3345060 + L1ME4a LINE L1 5568 5975 -146 659 348 28 0 chr1_random 977087 977340 -3344206 + MIR SINE MIR 3 262 0 2005 142 0 7 chr1_random 977375 977678 -3343868 - AluSx SINE Alu -11 301 1 320 233 112 0 chr1_random 978384 978500 -3343046 + L1ME LINE L1 5705 5833 -288 518 286 108 73 chr1_random 978881 979550 -3341996 + L1ME4a LINE L1 5356 6047 -74 2022 85 0 18 chr1_random 979633 979914 -3341632 + AluY SINE Alu 5 280 -31 446 145 0 12 chr1_random 979927 980010 -3341536 + (GAAA)n Simple_repeat Simple_repeat 3 84 0 189 74 0 0 chr1_random 980838 980865 -3340681 + (CA)n Simple_repeat Simple_repeat 2 28 0 338 165 13 0 chr1_random 982701 982780 -3338766 + (TCTA)n Simple_repeat Simple_repeat 2 81 0 2348 88 0 0 chr1_random 982858 983153 -3338393 + AluSg SINE Alu 1 295 -15 30 0 0 0 chr1_random 983192 983222 -3338324 + AT_rich Low_complexity Low_complexity 1 30 0 254 294 66 15 chr1_random 983288 983424 -3338122 - L1M4 LINE L1 -3528 2618 2476 214 340 228 30 chr1_random 983537 983805 -3337741 - L2 LINE L2 -106 3207 2887 1118 216 9 0 chr1_random 983805 984027 -3337519 + AluJb SINE Alu 23 246 -66 523 322 0 6 chr1_random 984355 984532 -3337014 + MIR SINE MIR 79 254 -8 1378 161 8 6 chr1_random 985707 986078 -3335468 - L1M1 LINE L1 -743 5403 5113 2734 160 24 18 chr1_random 986085 986629 -3334917 + L1MA8 LINE L1 5745 6291 0 529 97 0 0 chr1_random 986649 986721 -3334825 + AluSg/x SINE Alu 178 249 -61 901 226 49 112 chr1_random 986895 987280 -3334266 + MLT1A1 LTR MaLR 1 361 -4 6489 238 24 66 chr1_random 987286 989088 -3332458 + MLT1A1-int LTR MaLR 3 1729 -6 1164 193 48 92 chr1_random 989106 989485 -3332061 + MLT1A1 LTR MaLR 4 365 0 23 68 0 0 chr1_random 989528 989572 -3331974 + AT_rich Low_complexity Low_complexity 1 44 0 1901 134 7 0 chr1_random 989798 990074 -3331472 + AluSp SINE Alu 1 278 -35 744 12 0 0 chr1_random 990074 990159 -3331387 + (GAAA)n Simple_repeat Simple_repeat 4 88 0 21 0 0 0 chr1_random 990624 990645 -3330901 + AT_rich Low_complexity Low_complexity 1 21 0 2133 97 14 0 chr1_random 993289 993577 -3327969 - AluY SINE Alu -19 292 1 1513 228 134 47 chr1_random 994373 994920 -3326626 + MER52A LTR ERV1 1 692 -1063 8093 72 9 15 chr1_random 994920 996038 -3325508 + L1PA7 LINE L1 3482 4592 -1554 6487 62 6 21 chr1_random 996048 996936 -3324610 + L1PA7 LINE L1 5280 6153 -1 13737 169 51 32 chr1_random 996936 997638 -3323908 + MER41-int LTR ERV1 2615 3302 -3694 1915 138 0 7 chr1_random 997638 997927 -3323619 - AluSx SINE Alu -13 299 13 13737 169 51 32 chr1_random 997927 999635 -3321911 + MER41-int LTR ERV1 3302 4976 -2020 2360 90 0 7 chr1_random 999635 999936 -3321610 + AluY SINE Alu 1 299 -12 13737 169 51 32 chr1_random 999936 1000600 -3320946 + MER41-int LTR ERV1 4976 5626 -1370 2133 121 0 6 chr1_random 1000600 1000913 -3320633 + AluY SINE Alu 1 311 0 13737 169 51 32 chr1_random 1000913 1001394 -3320152 + MER41-int LTR ERV1 5626 6993 -3 6890 213 29 11 chr1_random 1001458 1002927 -3318619 + MER52A LTR ERV1 204 1755 0 25 0 0 0 chr1_random 1003913 1003938 -3317608 + AT_rich Low_complexity Low_complexity 1 25 0 1321 251 116 17 chr1_random 1004364 1004786 -3316760 + MLT1C LTR MaLR 1 464 -3 668 209 5 59 chr1_random 1004978 1005165 -3316381 - AluJb SINE Alu -3 309 133 245 287 21 32 chr1_random 1005846 1005940 -3315606 + MLT1J2 LTR MaLR 91 183 -267 202 345 57 66 chr1_random 1006233 1006534 -3315012 - L2 LINE L2 -4 3309 3012 1068 314 95 38 chr1_random 1006571 1006888 -3314658 - L2 LINE L2 -363 2951 2654 468 0 0 0 chr1_random 1006888 1006940 -3314606 + (TA)n Simple_repeat Simple_repeat 2 53 0 1068 314 95 38 chr1_random 1006940 1007335 -3314211 - L2 LINE L2 -660 2654 2198 438 241 41 41 chr1_random 1007393 1007538 -3314008 - MER97b DNA MER1_type? -8 1045 901 1302 212 10 101 chr1_random 1007558 1007945 -3313601 + MLT1B LTR MaLR 1 352 -38 25 0 0 0 chr1_random 1007949 1007974 -3313572 + AT_rich Low_complexity Low_complexity 1 25 0 994 279 83 12 chr1_random 1008009 1008429 -3313117 - MER97a DNA MER1_type? -97 797 348 436 252 102 0 chr1_random 1008535 1008662 -3312884 - MER97a DNA MER1_type? -744 150 11 703 290 69 59 chr1_random 1008662 1009069 -3312477 - L2 LINE L2 -1270 2044 1634 28 29 0 0 chr1_random 1009546 1009581 -3311965 + AT_rich Low_complexity Low_complexity 1 35 0 2721 235 67 39 chr1_random 1012347 1013594 -3307952 + Charlie5 DNA MER1_type 928 2278 -346 1541 45 135 111 chr1_random 1013594 1013883 -3307663 - AluY SINE Alu -15 296 1 2721 235 67 39 chr1_random 1013883 1014235 -3307311 + Charlie5 DNA MER1_type 2278 2619 -5 254 336 125 21 chr1_random 1014773 1015100 -3306446 - L2 LINE L2 -1177 2137 1777 327 78 0 0 chr1_random 1015231 1015282 -3306264 + (A)n Simple_repeat Simple_repeat 1 51 0 372 133 17 0 chr1_random 1015714 1015774 -3305772 - L1MC/D LINE L1 -826 5507 5447 183 182 0 0 chr1_random 1016608 1016641 -3304905 - L2 LINE L2 -1 3312 3280 1587 173 6 10 chr1_random 1016727 1017039 -3304507 - AluY SINE Alu 0 311 1 25 31 0 0 chr1_random 1018179 1018211 -3303335 + AT_rich Low_complexity Low_complexity 1 32 0 2487 111 8 0 chr1_random 1018269 1018621 -3302925 - THE1A LTR MaLR 0 355 1 10761 107 12 13 chr1_random 1018621 1020202 -3301344 - THE1A-int LTR MaLR 0 1580 1 2661 88 6 0 chr1_random 1020202 1020555 -3300991 - THE1A LTR MaLR 0 355 1 909 205 89 0 chr1_random 1020871 1021061 -3300485 + MLT2B1 LTR ERVL 111 317 -203 803 223 23 0 chr1_random 1021035 1021210 -3300336 + MLT2B2 LTR ERVL 337 515 0 * 534 283 45 25 chr1_random 1021657 1021855 -3299691 - MER58A DNA MER1_type -22 202 1 671 337 35 25 chr1_random 1022352 1022634 -3298912 + MLT1I LTR MaLR 104 388 -21 241 216 0 0 chr1_random 1022815 1022866 -3298680 + L2 LINE L2 3261 3311 -2 331 266 38 0 chr1_random 1022909 1022988 -3298558 + HsTC2 DNA Tc2 76 157 -1741 2360 244 16 31 chr1_random 1022991 1023606 -3297940 - LTR27 LTR ERV1 0 636 31 794 179 6 35 chr1_random 1023654 1023827 -3297719 + MER44D DNA MER2_type 2 439 -170 * 1034 114 14 101 chr1_random 1023818 1024037 -3297509 + MER44D DNA MER2_type 395 594 -11 28 0 0 0 chr1_random 1024300 1024328 -3297218 + AT_rich Low_complexity Low_complexity 1 28 0 240 295 134 18 chr1_random 1025308 1025420 -3296126 + MLT1I LTR MaLR 107 231 -178 252 0 0 0 chr1_random 1026737 1026765 -3294781 + (TG)n Simple_repeat Simple_repeat 1 28 0 234 0 0 0 chr1_random 1026798 1026824 -3294722 + (TG)n Simple_repeat Simple_repeat 1 26 0 252 0 0 0 chr1_random 1028052 1028080 -3293466 + (CA)n Simple_repeat Simple_repeat 2 29 0 337 207 45 27 chr1_random 1029026 1029137 -3292409 - MER103 DNA DNA -3 163 51 4948 131 23 0 chr1_random 1029217 1029998 -3291548 - L1PA10 LINE L1 -11 6157 5359 4990 155 2 10 chr1_random 1030004 1030877 -3290669 + L1PA10 LINE L1 4492 5357 -789 6874 76 28 22 chr1_random 1030926 1032682 -3288864 - L1PA7 LINE L1 -6 6148 4362 241 291 97 39 chr1_random 1033068 1033171 -3288375 - L2 LINE L2 -33 3280 3172 593 216 50 14 chr1_random 1034624 1034763 -3286783 + L1M1 LINE L1 13 156 -7409 2881 85 5 8 chr1_random 1034763 1035164 -3286382 - L1PA8A LINE L1 0 6131 5732 415 63 0 16 chr1_random 1035165 1035228 -3286318 + L1PA8A LINE L1 5023 5084 -1062 3112 86 28 17 chr1_random 1035231 1035641 -3285905 + L1PA8A LINE L1 5266 5683 -448 2417 72 3 3 chr1_random 1035641 1035946 -3285600 + AluY SINE Alu 1 305 -6 3112 86 28 17 chr1_random 1035946 1035998 -3285548 + L1PA8A LINE L1 5683 5733 -398 * 7807 212 34 27 chr1_random 1035986 1038258 -3283288 + L1M1 LINE L1 143 2730 -4835 14006 190 36 9 chr1_random 1038287 1041946 -3279600 + L1PA12 LINE L1 609 4097 -3487 185 331 119 25 chr1_random 1042093 1042371 -3279175 - L2 LINE L2 -1024 2290 1987 1086 283 86 20 chr1_random 1042596 1043406 -3278140 + L1M1 LINE L1 3657 4520 -3045 1502 251 82 35 chr1_random 1043838 1044460 -3277086 + MER99 DNA DNA 104 754 -74 200 135 27 0 chr1_random 1045256 1045293 -3276253 + A-rich Low_complexity Low_complexity 5 42 0 234 0 0 0 chr1_random 1045332 1045358 -3276188 + (TAAAA)n Simple_repeat Simple_repeat 2 27 0 670 297 54 9 chr1_random 1045795 1046017 -3275529 + MIR SINE MIR 31 262 0 2020 124 3 3 chr1_random 1046153 1046451 -3275095 + AluSx SINE Alu 1 298 -14 28 29 0 0 chr1_random 1047301 1047336 -3274210 + AT_rich Low_complexity Low_complexity 1 35 0 1358 232 39 39 chr1_random 1047429 1047620 -3273926 + L1ME1 LINE L1 5531 5721 -445 2023 142 76 20 chr1_random 1047620 1047964 -3273582 + THE1B LTR MaLR 2 364 0 1358 232 39 39 chr1_random 1047964 1048233 -3273313 + L1ME1 LINE L1 5720 5991 -175 1607 224 60 9 chr1_random 1048274 1048738 -3272808 + Charlie1 DNA MER1_type 1704 2191 -570 3109 196 25 2 chr1_random 1049321 1049912 -3271634 + MER6A DNA MER2_type 1 605 0 186 323 0 16 chr1_random 1050756 1050818 -3270728 + MIR SINE MIR 100 160 -102 199 274 39 88 chr1_random 1051438 1051540 -3270006 - MER5A DNA MER1_type -45 144 48 24 32 0 0 chr1_random 1051901 1051932 -3269614 + AT_rich Low_complexity Low_complexity 1 31 0 875 213 58 105 chr1_random 1051933 1052313 -3269233 - MLT1B LTR MaLR 0 390 29 21 0 0 0 chr1_random 1053325 1053346 -3268200 + AT_rich Low_complexity Low_complexity 1 21 0 526 270 119 0 chr1_random 1055276 1055435 -3266111 - MER45A DNA AcHobo 0 178 1 394 268 167 0 chr1_random 1055684 1055882 -3265664 + MLT1H1 LTR MaLR 325 555 0 326 267 13 0 chr1_random 1056070 1056145 -3265401 + MLT1D LTR MaLR 6 81 -424 700 236 34 17 chr1_random 1056147 1056325 -3265221 - MLT1C LTR MaLR -4 463 283 2364 138 8 3 chr1_random 1056334 1056696 -3264850 + THE1B LTR MaLR 1 364 0 8567 115 70 82 chr1_random 1056696 1058289 -3263257 + THE1B-int LTR MaLR 1 1574 -6 2564 113 8 6 chr1_random 1058294 1058657 -3262889 + THE1B LTR MaLR 1 364 0 302 250 37 46 chr1_random 1058716 1058824 -3262722 - MLT1C LTR MaLR -295 172 66 800 217 35 55 chr1_random 1058873 1059278 -3262268 + MLT1D LTR MaLR 66 505 0 295 290 0 0 chr1_random 1060104 1060173 -3261373 - MLT1J1 LTR MaLR -313 133 65 285 228 87 11 chr1_random 1061258 1061350 -3260196 + L2 LINE L2 2872 2970 -343 283 163 0 0 chr1_random 1061797 1061840 -3259706 + L2 LINE L2 3262 3304 -9 205 322 33 11 chr1_random 1062026 1062116 -3259430 - L2 LINE L2 -13 3300 3209 231 260 24 16 chr1_random 1063196 1063319 -3258227 + (TA)n Simple_repeat Simple_repeat 2 125 0 577 297 19 29 chr1_random 1063549 1063758 -3257788 - MIR SINE MIR -45 217 11 424 288 135 60 chr1_random 1064179 1064665 -3256881 + L2 LINE L2 2728 3247 -66 263 239 196 0 chr1_random 1065153 1065245 -3256301 + MIR3 SINE MIR 98 207 -1 206 196 18 36 chr1_random 1065385 1065441 -3256105 + (CAGAGA)n Simple_repeat Simple_repeat 2 56 0 196 53 53 0 chr1_random 1065661 1065699 -3255847 + (TA)n Simple_repeat Simple_repeat 2 41 0 1719 163 0 28 chr1_random 1065702 1065990 -3255556 - AluSx SINE Alu -31 281 2 26 50 0 0 chr1_random 1066081 1066121 -3255425 + AT_rich Low_complexity Low_complexity 1 40 0 357 78 0 94 chr1_random 1066685 1066749 -3254797 + MER11A LTR ERVK 1 58 -1208 6513 80 8 7 chr1_random 1066749 1067622 -3253924 + HERVK11 LTR ERVK 5066 5939 -2014 734 24 0 0 chr1_random 1067623 1067707 -3253839 - HERVK11 LTR ERVK -1201 6752 6669 7714 58 29 4 chr1_random 1067707 1068683 -3252863 + HERVK11 LTR ERVK 6954 7953 0 4293 162 28 42 chr1_random 1068683 1069679 -3251867 + MER11C LTR ERVK 1 1071 0 23 0 0 0 chr1_random 1071195 1071218 -3250328 + AT_rich Low_complexity Low_complexity 1 23 0 25954 52 5 0 chr1_random 1071536 1074821 -3246725 + L1PA4 LINE L1 761 4061 -2085 11919 37 1 0 chr1_random 1074832 1077024 -3244522 + L1PA4 LINE L1 3959 6151 -4 1593 169 7 31 chr1_random 1077141 1077470 -3244076 - AluJb SINE Alu 0 322 1 203 287 39 70 chr1_random 1477866 1477995 -2843551 + MIR SINE MIR 16 140 -68 2194 105 3 3 chr1_random 1478011 1478307 -2843239 + AluSx SINE Alu 1 296 -16 206 250 54 18 chr1_random 1478600 1478656 -2842890 - MIR SINE MIR -140 122 65 249 162 0 0 chr1_random 1478697 1478734 -2842812 + MER5B DNA MER1_type 8 44 -134 237 349 111 12 chr1_random 1479000 1479172 -2842374 + MIR3 SINE MIR 3 191 -17 205 288 0 0 chr1_random 1479208 1479267 -2842279 + A-rich Low_complexity Low_complexity 1 59 0 2199 70 7 14 chr1_random 1479472 1479758 -2841788 - AluY SINE Alu -27 284 1 1815 99 86 0 chr1_random 1479759 1480051 -2841495 + L1M1 LINE L1 2347 2663 -4902 2217 79 24 0 chr1_random 1480408 1480698 -2840848 - AluSx SINE Alu -15 297 1 424 121 39 0 chr1_random 1484737 1484857 -2836689 + CT-rich Low_complexity Low_complexity 1 124 0 297 240 0 73 chr1_random 1484915 1485011 -2836535 + MLT1L LTR MaLR 1 89 -526 1989 121 76 53 chr1_random 1485404 1485760 -2835786 + THE1B LTR MaLR 1 364 0 25 0 0 0 chr1_random 1485833 1485858 -2835688 + AT_rich Low_complexity Low_complexity 1 25 0 30954 114 14 55 chr1_random 1486254 1492658 -2828888 - L1PA7 LINE L1 -11 6143 12 254 336 35 9 chr1_random 1492693 1492809 -2828737 + LTR67 LTR ERVL 439 557 0 631 282 99 39 chr1_random 1493030 1494041 -2827505 - L1M4 LINE L1 -776 5606 4535 666 159 49 170 chr1_random 1495140 1495428 -2826118 - MER31B LTR ERV1 0 466 101 299 140 35 0 chr1_random 1495649 1495706 -2825840 - HAL1 LINE L1 -14 2493 2435 1062 102 5 66 chr1_random 1496601 1496798 -2824748 - L1MA1 LINE L1 0 6302 6118 449 263 37 42 chr1_random 1496932 1497158 -2824388 + Charlie8 DNA MER1_type 108 1416 -1001 246 332 85 68 chr1_random 1499553 1499788 -2821758 + L2 LINE L2 2616 2854 -460 358 374 53 34 chr1_random 1499950 1500156 -2821390 + L2 LINE L2 2883 3092 -180 2621 48 0 0 chr1_random 1500284 1500593 -2820953 - AluY SINE Alu -2 309 1 1578 197 37 13 chr1_random 1500781 1501157 -2820389 - L1MB3 LINE L1 0 6183 5799 180 176 0 0 chr1_random 1501166 1501200 -2820346 + (TATATG)n Simple_repeat Simple_repeat 2 35 0 303 188 29 14 chr1_random 1501201 1501270 -2820276 - L1MCa LINE L1 -4362 2064 1995 8403 218 45 12 chr1_random 1501280 1505302 -2816244 - L1M4 LINE L1 -2116 4266 16 3397 131 94 51 chr1_random 1505315 1505962 -2815584 - L1PA8A LINE L1 -1 6130 5456 1414 246 56 8 chr1_random 1505960 1506427 -2815119 + L1ME1 LINE L1 5655 6153 -13 * 194 371 48 24 chr1_random 1510263 1510387 -2811159 + L2 LINE L2 3142 3268 -4 213 321 37 25 chr1_random 1511776 1511857 -2809689 + L2 LINE L2 2888 2969 -303 25 0 0 0 chr1_random 1512302 1512327 -2809219 + AT_rich Low_complexity Low_complexity 1 25 0 30 45 0 0 chr1_random 1512912 1512956 -2808590 + AT_rich Low_complexity Low_complexity 1 44 0 1929 154 21 24 chr1_random 1513150 1513526 -2808020 + THE1C LTR MaLR 1 375 0 9760 128 34 22 chr1_random 1513526 1515081 -2806465 + THE1C-int LTR MaLR 1 1573 -7 1918 158 24 34 chr1_random 1515088 1515467 -2806079 + THE1C LTR MaLR 1 375 0 678 277 18 18 chr1_random 1515654 1515820 -2805726 + MIR SINE MIR 18 183 -79 14445 178 54 2 chr1_random 1515820 1518428 -2803118 - L1M1 LINE L1 -4808 2757 16 343 241 72 0 chr1_random 1518428 1518511 -2803035 + MIR SINE MIR 173 261 -1 22 0 0 0 chr1_random 1518583 1518605 -2802941 + AT_rich Low_complexity Low_complexity 1 22 0 26 0 0 0 chr1_random 1518636 1518662 -2802884 + AT_rich Low_complexity Low_complexity 1 26 0 2453 116 0 3 chr1_random 1518701 1519046 -2802500 - HSMAR1 DNA Mariner 0 1287 944 * 4807 119 9 35 chr1_random 1519024 1519241 -2802305 - HSMAR1 DNA Mariner -557 730 509 1750 96 126 44 chr1_random 1519241 1519646 -2801900 - LTR21B LTR ERV1 0 438 1 4807 119 9 35 chr1_random 1519646 1520177 -2801369 - HSMAR1 DNA Mariner -778 509 1 690 191 15 8 chr1_random 1520772 1520903 -2800643 - MLT1F1 LTR MaLR -4 563 432 1578 299 41 40 chr1_random 1521004 1521704 -2799842 + L2 LINE L2 2428 3134 -179 2542 176 26 4 chr1_random 1521704 1522158 -2799388 + MLT1C LTR MaLR 1 464 -3 1578 299 41 40 chr1_random 1522158 1522337 -2799209 + L2 LINE L2 3134 3311 -2 7398 184 20 10 chr1_random 1523426 1524239 -2797307 - L1P LINE L1 -2483 3663 2828 1958 158 0 0 chr1_random 1524239 1524543 -2797003 - AluSx SINE Alu -6 306 3 7398 184 20 10 chr1_random 1524543 1525188 -2796358 - L1P LINE L1 -3318 2828 2191 8833 160 3 24 chr1_random 1525189 1527695 -2793851 + L1PA13 LINE L1 3682 6159 -4 779 309 83 59 chr1_random 1527961 1528469 -2793077 - MLT1G1 LTR MaLR 0 595 76 1843 166 12 18 chr1_random 1528534 1528866 -2792680 - L1MC1 LINE L1 0 6333 6004 29 28 0 0 chr1_random 1528942 1528978 -2792568 + AT_rich Low_complexity Low_complexity 1 36 0 664 276 77 16 chr1_random 1529103 1529349 -2792197 - MIR SINE MIR -1 261 1 2039 210 141 55 chr1_random 1529508 1530252 -2791294 + L1MC3 LINE L1 6707 7514 -271 551 174 28 0 chr1_random 1530249 1530358 -2791188 + L1MD3 LINE L1 7865 7976 -19 * 504 231 55 28 chr1_random 1530418 1530600 -2790946 + L1ME4a LINE L1 5930 6116 -5 260 273 15 0 chr1_random 1530993 1531059 -2790487 + (TAG)n Simple_repeat Simple_repeat 1 67 0 233 184 82 0 chr1_random 1531079 1531128 -2790418 + L1MD3 LINE L1 7735 7787 -208 24 67 0 0 chr1_random 1531489 1531534 -2790012 + AT_rich Low_complexity Low_complexity 1 45 0 317 329 72 6 chr1_random 1531778 1531945 -2789601 - MIR SINE MIR -3 259 82 1464 239 30 25 chr1_random 1532026 1532394 -2789152 - MLT1A2 LTR MaLR -4 370 1 1897 148 0 3 chr1_random 1533368 1533651 -2787895 + AluSx SINE Alu 1 282 -30 1927 95 60 25 chr1_random 1534521 1534804 -2786742 + AluSg SINE Alu 1 293 -17 485 88 0 0 chr1_random 1535935 1536003 -2785543 + (T)n Simple_repeat Simple_repeat 1 68 0 24 32 0 0 chr1_random 1536785 1536816 -2784730 + AT_rich Low_complexity Low_complexity 1 31 0 473 278 7 0 chr1_random 1536816 1536960 -2784586 + MER46C DNA MER2_type 133 277 -61 754 306 31 16 chr1_random 1537668 1537926 -2783620 - MIR SINE MIR 0 262 1 792 276 11 11 chr1_random 1538753 1539014 -2782532 + MIR SINE MIR 2 262 0 2137 186 34 154 chr1_random 1539156 1539944 -2781602 + LTR8A LTR ERV1 34 727 0 416 259 114 15 chr1_random 1541060 1541191 -2780355 - L2 LINE L2 0 3272 3129 246 193 0 0 chr1_random 1541212 1541269 -2780277 + (TA)n Simple_repeat Simple_repeat 2 58 0 2023 104 0 69 chr1_random 1541373 1541690 -2779856 + AluSx SINE Alu 5 299 -13 318 247 0 12 chr1_random 1541807 1541892 -2779654 - MER94 DNA DNA -5 129 46 274 245 49 70 chr1_random 1542260 1542403 -2779143 + MER103 DNA DNA 26 165 -1 784 269 51 34 chr1_random 1542687 1542921 -2778625 + MIR SINE MIR 3 240 -22 266 274 95 0 chr1_random 1542928 1543023 -2778523 + MIR SINE MIR 123 226 -36 359 329 31 25 chr1_random 1543078 1543239 -2778307 + MIR SINE MIR 100 261 -1 251 245 11 106 chr1_random 1543210 1543304 -2778242 - MIR3 SINE MIR -20 188 104 * 2115 110 0 3 chr1_random 1543337 1543651 -2777895 - AluSc SINE Alu 0 313 1 596 245 7 40 chr1_random 1545288 1545439 -2776107 + MIR SINE MIR 43 188 -74 264 231 0 0 chr1_random 1545461 1545539 -2776007 + (TATATG)n Simple_repeat Simple_repeat 2 79 0 292 297 39 3 chr1_random 1545549 1545694 -2775852 - L1ME LINE L1 -296 5825 5670 196 229 121 24 chr1_random 1546152 1546235 -2775311 - L2 LINE L2 -50 3263 3173 221 251 150 37 chr1_random 1546801 1546912 -2774634 + MIR SINE MIR 6 130 -78 2047 112 14 0 chr1_random 1547232 1547527 -2774019 - AluSc SINE Alu -10 299 1 300 260 14 0 chr1_random 1547672 1547745 -2773801 + MLT1L LTR MaLR 1 74 -541 319 261 136 54 chr1_random 1547963 1548147 -2773399 + MLT1J LTR MaLR 287 485 -26 648 265 33 37 chr1_random 1548918 1549133 -2772413 - MIR SINE MIR 0 262 49 875 203 21 16 chr1_random 1549144 1549331 -2772215 + MER5A DNA MER1_type 2 189 0 249 33 0 0 chr1_random 1550386 1550416 -2771130 + (TAA)n Simple_repeat Simple_repeat 2 31 0 207 208 0 21 chr1_random 1550417 1550465 -2771081 + GA-rich Low_complexity Low_complexity 3 49 0 23 0 0 0 chr1_random 1551399 1551422 -2770124 + AT_rich Low_complexity Low_complexity 1 23 0 207 315 115 65 chr1_random 1551859 1552215 -2769331 - L2 LINE L2 -5 3308 2935 257 274 85 28 chr1_random 1552370 1552476 -2769070 - L2 LINE L2 -481 2833 2722 1564 152 134 34 chr1_random 1552696 1553024 -2768522 + MLT1A1 LTR MaLR 1 361 -4 334 325 87 53 chr1_random 1554283 1554720 -2766826 + L2 LINE L2 2066 2517 -797 515 245 76 38 chr1_random 1554922 1555159 -2766387 - MER113 DNA MER1_type? -70 451 206 2017 134 0 3 chr1_random 1555605 1555963 -2765583 + AluSx SINE Alu 1 357 0 32 57 0 0 chr1_random 1556249 1556302 -2765244 + AT_rich Low_complexity Low_complexity 1 53 0 402 262 16 33 chr1_random 1556750 1556872 -2764674 + MLT2E LTR ERVL 29 148 -480 980 114 5 27 chr1_random 1557173 1557208 -2764338 + (TTTC)n Simple_repeat Simple_repeat 1 214 0 980 114 5 27 chr1_random 1557208 1557392 -2764154 + (TTTC)n Simple_repeat Simple_repeat 1 180 0 1004 255 240 23 chr1_random 1557711 1558194 -2763352 - MLT1G LTR MaLR -2 588 1 328 349 58 64 chr1_random 1559005 1559440 -2762106 - L2 LINE L2 0 3272 2841 275 350 53 40 chr1_random 1559634 1559860 -2761686 - L2 LINE L2 -743 2571 2343 655 236 90 23 chr1_random 1559860 1560255 -2761291 + MLT1D LTR MaLR 1 505 0 1391 168 9 60 chr1_random 1560277 1560592 -2760954 - L1MA6 LINE L1 -3 6297 5999 6435 199 29 16 chr1_random 1560593 1562062 -2759484 - L1 LINE L1 -1084 6124 4638 3624 242 28 75 chr1_random 1562060 1563887 -2757659 - L1 LINE L1 -2952 4256 2938 * 1496 170 97 0 chr1_random 1563887 1564172 -2757374 - AluSx SINE Alu 0 310 1 3624 242 28 75 chr1_random 1564172 1565329 -2756217 - L1 LINE L1 -4270 2938 1729 945 346 38 13 chr1_random 1565702 1566138 -2755408 - L1 LINE L1 -6188 1021 180 189 350 91 32 chr1_random 1566238 1566424 -2755122 - L2 LINE L2 -984 2330 2134 2193 129 0 0 chr1_random 1567172 1567474 -2754072 - AluSx SINE Alu -10 302 1 186 103 0 0 chr1_random 1570012 1570041 -2751505 + (TAA)n Simple_repeat Simple_repeat 3 31 0 23 33 0 0 chr1_random 1571176 1571206 -2750340 + AT_rich Low_complexity Low_complexity 1 30 0 280 323 0 21 chr1_random 1571686 1571779 -2749767 - MIR SINE MIR -115 147 57 492 304 61 22 chr1_random 1572009 1572239 -2749307 + L3 LINE CR1 1128 1366 -211 200 132 53 0 chr1_random 1572253 1572291 -2749255 + (TAGA)n Simple_repeat Simple_repeat 4 43 0 2431 56 7 0 chr1_random 1573202 1573507 -2748039 + L1PA7 LINE L1 5836 6142 -12 231 183 17 17 chr1_random 1573507 1573567 -2747979 + (TA)n Simple_repeat Simple_repeat 1 60 0 348 276 0 0 chr1_random 1573569 1573656 -2747890 - L1MC4 LINE L1 -1342 6700 6614 231 256 100 0 chr1_random 1573679 1573769 -2747777 - L1ME LINE L1 -296 5874 5776 341 326 60 51 chr1_random 1573792 1574406 -2747140 - L1ME LINE L1 -719 5640 4977 257 284 77 43 chr1_random 1574470 1574822 -2746724 - L1ME LINE L1 -3613 2533 2170 26 30 0 0 chr1_random 1574824 1574857 -2746689 + AT_rich Low_complexity Low_complexity 1 33 0 646 249 87 11 chr1_random 1576234 1576419 -2745127 + LTR50 LTR ERVL 5 203 -592 574 215 267 61 chr1_random 1576406 1576717 -2744829 + LTR50 LTR ERVL 419 793 -2 * 265 363 52 86 chr1_random 1578842 1579343 -2742203 + L2 LINE L2 2822 3305 -8 765 304 57 4 chr1_random 1579419 1579649 -2741897 + MIR SINE MIR 11 252 -10 202 328 40 56 chr1_random 1581495 1581693 -2739853 + L2 LINE L2 2557 2751 -563 1195 255 47 64 chr1_random 1581834 1582304 -2739242 - MLT1C LTR MaLR 0 467 6 456 236 6 149 chr1_random 1582309 1582510 -2739036 - MLT1C-int LTR MaLR -1 1730 1238 1103 264 7 22 chr1_random 1582610 1582886 -2738660 - MLT1C-int LTR MaLR -192 1179 908 2625 232 48 38 chr1_random 1582978 1583732 -2737814 - MLT1C-int LTR MaLR -487 884 20 1649 196 35 14 chr1_random 1583867 1584213 -2737333 - MLT2C1 LTR ERVL -41 356 4 281 328 45 63 chr1_random 1584247 1584509 -2737037 + L2 LINE L2 2976 3307 -6 203 338 0 0 chr1_random 1586049 1586117 -2735429 - MIR SINE MIR -109 99 32 692 324 62 84 chr1_random 1589266 1589611 -2731935 - MER1B DNA MER1_type -2373 339 46 2056 103 3 10 chr1_random 1589611 1589911 -2731635 + AluSx SINE Alu 3 300 -12 692 324 62 84 chr1_random 1589911 1589943 -2731603 - MER1B DNA MER1_type -2666 46 15 22 0 0 0 chr1_random 1591169 1591191 -2730355 + AT_rich Low_complexity Low_complexity 1 22 0 347 362 35 7 chr1_random 1591394 1591535 -2730011 + L2 LINE L2 3118 3262 -10 336 252 148 15 chr1_random 1592393 1592528 -2729018 - MIR SINE MIR -92 170 18 2540 107 90 7 chr1_random 1592916 1593326 -2728220 + MLT2A1 LTR ERVL 1 444 0 23 33 0 0 chr1_random 1593646 1593676 -2727870 + AT_rich Low_complexity Low_complexity 1 30 0 180 0 0 0 chr1_random 1594202 1594222 -2727324 + (TTTTA)n Simple_repeat Simple_repeat 2 21 0 1564 185 0 4 chr1_random 1594231 1594485 -2727061 - AluJb SINE Alu -59 253 1 296 364 73 31 chr1_random 1594731 1594992 -2726554 - L2 LINE L2 -584 2730 2459 36 23 0 0 chr1_random 1595055 1595098 -2726448 + AT_rich Low_complexity Low_complexity 1 43 0 189 184 0 0 chr1_random 1595149 1595187 -2726359 - MIR SINE MIR -139 123 86 183 247 110 55 chr1_random 1597035 1597108 -2724438 - L2 LINE L2 0 3272 3196 5096 136 14 1 chr1_random 1597137 1597946 -2723600 - L1PA16 LINE L1 -9 6157 5339 4184 221 28 14 chr1_random 1597945 1598988 -2722558 + L1PA16 LINE L1 4274 5330 -816 * 1321 227 85 13 chr1_random 1599026 1599413 -2722133 - L1MB8 LINE L1 -2 6176 5762 307 258 16 0 chr1_random 1599742 1599804 -2721742 + L1M4b LINE L1 2 64 -6795 1596 257 82 23 chr1_random 1599883 1600358 -2721188 + L1M4b LINE L1 101 603 -6256 3342 190 29 16 chr1_random 1600373 1601063 -2720483 + L1M4b LINE L1 780 1478 -5381 26 64 0 0 chr1_random 1601288 1601335 -2720211 + AT_rich Low_complexity Low_complexity 1 47 0 24 32 0 0 chr1_random 1601700 1601731 -2719815 + AT_rich Low_complexity Low_complexity 1 31 0 21 36 0 0 chr1_random 1602092 1602120 -2719426 + AT_rich Low_complexity Low_complexity 1 28 0 10255 198 34 15 chr1_random 1602638 1604894 -2716652 - L1MC3 LINE L1 -34 8169 5871 3389 255 71 70 chr1_random 1604915 1605394 -2716152 - L1MC3 LINE L1 -1494 5070 4593 2231 138 30 10 chr1_random 1605394 1605792 -2715754 - L1MA5A LINE L1 -4 6293 5888 3389 255 71 70 chr1_random 1605792 1606620 -2714926 - L1MC3 LINE L1 -1971 4593 3767 660 225 0 43 chr1_random 1606620 1606758 -2714788 - FLAM_A SINE Alu 0 133 2 3389 255 71 70 chr1_random 1606758 1609560 -2711986 - L1MC3 LINE L1 -2797 3767 825 1398 302 71 58 chr1_random 1609557 1610336 -2711210 - L1MC3 LINE L1 -5027 1018 230 * 6625 131 17 35 chr1_random 1610360 1612021 -2709525 - L1MA2 LINE L1 -1 6303 4677 495 241 168 1 chr1_random 1612075 1612301 -2709245 - L1MC3 LINE L1 -5810 341 37 206 174 22 0 chr1_random 1613468 1613514 -2708032 + T-rich Low_complexity Low_complexity 2 48 0 189 286 0 0 chr1_random 1614560 1614609 -2706937 - L2 LINE L2 0 3313 3265 843 295 32 8 chr1_random 1614871 1615122 -2706424 + HERV16 LTR ERVL 1753 2009 -2987 765 109 16 5 chr1_random 1616094 1616246 -2705300 - L1 LINE L1 -753 5393 5235 * 5512 130 8 28 chr1_random 1616242 1616524 -2705022 - L1MA1 LINE L1 -226 6076 5790 2203 104 7 0 chr1_random 1616524 1616821 -2704725 - AluSg SINE Alu -11 299 1 5512 130 8 28 chr1_random 1616821 1617810 -2703736 - L1MA1 LINE L1 -512 5790 4827 201 308 62 15 chr1_random 1617936 1618001 -2703545 + L3 LINE CR1 1433 1500 -77 441 341 18 12 chr1_random 1618216 1618386 -2703160 + MER5B DNA MER1_type 1 171 -7 414 0 0 0 chr1_random 1618675 1618721 -2702825 + (TCTA)n Simple_repeat Simple_repeat 4 49 0 483 320 46 11 chr1_random 1618800 1618975 -2702571 - MIR SINE MIR -33 229 49 182 235 0 10 chr1_random 1619109 1619207 -2702339 + CT-rich Low_complexity Low_complexity 1 97 0 485 268 140 73 chr1_random 1619699 1620057 -2701489 - L2 LINE L2 -1 3312 2931 284 197 28 28 chr1_random 1620428 1620499 -2701047 - HUERS-P3b LTR ERV1 -3829 3589 3519 294 339 121 66 chr1_random 1621644 1621933 -2699613 - L2 LINE L2 0 3272 2968 324 199 141 51 chr1_random 1622156 1622312 -2699234 + MER112 DNA MER1_type 2 171 -89 1916 159 35 3 chr1_random 1622328 1622668 -2698878 - L1MB3 LINE L1 -25 6158 5808 196 195 46 46 chr1_random 1622689 1622776 -2698770 - MIR SINE MIR -44 218 132 466 157 7 0 chr1_random 1623259 1623344 -2698202 - L1MB3 LINE L1 -300 5883 5793 323 298 48 52 chr1_random 1623614 1624004 -2697542 + MLT1J2 LTR MaLR 25 449 -1 610 199 9 148 chr1_random 1624015 1624231 -2697315 - MIR SINE MIR -64 198 13 261 235 147 0 chr1_random 1624260 1624328 -2697218 - MIR SINE MIR -66 196 119 451 333 67 18 chr1_random 1624437 1624722 -2696824 + L3 LINE CR1 1273 1571 -6 481 291 0 15 chr1_random 1625566 1625700 -2695846 + MIR SINE MIR 18 149 -113 460 336 65 14 chr1_random 1625769 1626046 -2695500 - L2 LINE L2 0 3313 3023 279 374 35 9 chr1_random 1626074 1626189 -2695357 - L2 LINE L2 -2 3270 3153 287 349 96 14 chr1_random 1626819 1627028 -2694518 + L2 LINE L2 2494 2719 -595 4765 146 114 5 chr1_random 1627160 1628056 -2693490 - L1MC1 LINE L1 -7 6326 5333 262 113 50 12 chr1_random 1628058 1628138 -2693408 + (TA)n Simple_repeat Simple_repeat 2 84 0 275 87 58 0 chr1_random 1628175 1628244 -2693302 + (TA)n Simple_repeat Simple_repeat 2 74 0 1517 186 0 65 chr1_random 1628247 1628553 -2692993 - AluJb SINE Alu -24 288 3 5004 230 57 35 chr1_random 1628554 1630295 -2691251 - L1MC1 LINE L1 -824 5322 3557 191 357 77 33 chr1_random 1631014 1631286 -2690260 + L2 LINE L2 1909 2192 -1122 1492 189 20 96 chr1_random 1632335 1632743 -2688803 + MLT2D LTR ERVL 38 414 0 2161 180 100 7 chr1_random 1632863 1633325 -2688221 + MLT1D LTR MaLR 1 505 0 1156 316 91 16 chr1_random 1633417 1634087 -2687459 + L1MEc LINE L1 35 754 -5642 6725 227 81 32 chr1_random 1634106 1634913 -2686633 - L1MA9 LINE L1 -227 6085 5319 207 0 0 0 chr1_random 1634913 1634936 -2686610 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 6725 227 81 32 chr1_random 1634936 1637143 -2684403 - L1MA9 LINE L1 -993 5319 2886 1660 119 60 22 chr1_random 1637143 1637468 -2684078 + AluSg SINE Alu 1 335 0 6725 227 81 32 chr1_random 1637468 1637723 -2683823 - L1MA9 LINE L1 -3426 2886 2645 258 105 0 0 chr1_random 1637724 1637762 -2683784 + (TG)n Simple_repeat Simple_repeat 1 38 0 233 118 59 73 chr1_random 1637762 1637830 -2683716 + L1MCa LINE L1 2006 2072 -4354 * 407 320 56 6 chr1_random 1637805 1637983 -2683563 - L1MA9 LINE L1 -3487 2659 2473 234 208 0 0 chr1_random 1638000 1638048 -2683498 + L1MA9 LINE L1 2427 2474 -3672 806 269 75 24 chr1_random 1638064 1638409 -2683137 + L1MEc LINE L1 755 1132 -5264 1848 143 130 38 chr1_random 1638409 1638801 -2682745 + MSTA LTR MaLR 1 428 0 806 269 75 24 chr1_random 1638801 1638920 -2682626 + L1MEc LINE L1 1132 1243 -5153 376 264 40 0 chr1_random 1638905 1639030 -2682516 + L1MEc LINE L1 2538 2667 -3548 * 2581 258 82 45 chr1_random 1639062 1640492 -2681054 + L1MEc LINE L1 2955 4437 -1778 8289 157 21 16 chr1_random 1640496 1641335 -2680211 + L1MA5A LINE L1 3635 4468 -1829 1960 103 9 60 chr1_random 1641335 1641476 -2680070 + AluSx SINE Alu 1 148 -164 474 18 0 0 chr1_random 1641476 1641531 -2680015 + (TA)n Simple_repeat Simple_repeat 2 56 0 1960 103 9 60 chr1_random 1641531 1641708 -2679838 + AluSx SINE Alu 148 303 -9 8289 157 21 16 chr1_random 1641708 1643515 -2678031 + L1MA5A LINE L1 4468 6293 -4 23 0 0 0 chr1_random 1643541 1643564 -2677982 + AT_rich Low_complexity Low_complexity 1 23 0 315 257 26 0 chr1_random 1643604 1643717 -2677829 + L1MEc LINE L1 4478 4593 -1622 240 163 0 0 chr1_random 1643769 1643812 -2677734 + (TA)n Simple_repeat Simple_repeat 2 44 0 339 65 0 0 chr1_random 1646631 1646677 -2674869 + (CA)n Simple_repeat Simple_repeat 1 46 0 441 293 117 42 chr1_random 1647311 1647618 -2673928 - L3 LINE CR1 -597 980 651 1951 92 7 18 chr1_random 1647840 1648124 -2673422 + AluY SINE Alu 1 281 -30 289 74 19 19 chr1_random 1649085 1649139 -2672407 + (TTTTA)n Simple_repeat Simple_repeat 1 54 0 1627 36 5 0 chr1_random 1649139 1649335 -2672211 - L1PA3 LINE L1 -24 6131 5935 930 309 95 18 chr1_random 1649757 1650302 -2671244 - L2 LINE L2 -120 3193 2606 1097 245 106 42 chr1_random 1650362 1650836 -2670710 - L1MC4a LINE L1 -1028 6780 6277 974 289 53 19 chr1_random 1651011 1651429 -2670117 - L1MC4a LINE L1 -1763 6045 5614 2691 148 34 19 chr1_random 1651455 1651990 -2669556 - L1MA8 LINE L1 -1 6290 5748 319 203 13 13 chr1_random 1651993 1652072 -2669474 - L1MC4a LINE L1 -1340 6468 6390 1150 286 88 26 chr1_random 1652107 1652530 -2669016 - L2 LINE L2 -1133 2181 1733 1962 148 59 14 chr1_random 1653647 1654005 -2667541 + THE1C LTR MaLR 1 374 -1 2863 107 70 103 chr1_random 1654006 1654578 -2666968 + THE1C-int LTR MaLR 1 553 -1027 2094 138 28 25 chr1_random 1654578 1654941 -2666605 - THE1B LTR MaLR 0 364 1 6764 127 17 4 chr1_random 1654941 1655949 -2665597 + THE1C-int LTR MaLR 549 1569 -11 1877 147 64 22 chr1_random 1655985 1656345 -2665201 + THE1C LTR MaLR 1 375 0 569 336 100 0 chr1_random 1656510 1656730 -2664816 - MIR SINE MIR -6 256 15 2258 198 72 0 chr1_random 1657100 1657574 -2663972 + MER67D LTR ERV1 3 510 -4 186 337 185 0 chr1_random 1657758 1657850 -2663696 - MIR3 SINE MIR -17 191 83 24 0 0 0 chr1_random 1658477 1658501 -2663045 + AT_rich Low_complexity Low_complexity 1 24 0 768 228 49 0 chr1_random 1859303 1859527 -2462019 + MER47A DNA MER2_type 66 300 -66 186 43 0 0 chr1_random 1859621 1859644 -2461902 + (TAAAAA)n Simple_repeat Simple_repeat 2 24 0 407 176 0 0 chr1_random 1860919 1860993 -2460553 - L1MB3 LINE L1 -72 6111 6038 340 287 21 75 chr1_random 1861134 1861322 -2460224 + MIR SINE MIR 85 262 0 380 284 47 6 chr1_random 1861439 1861608 -2459938 + (CCCTAG)n Simple_repeat Simple_repeat 2 177 0 253 121 0 35 chr1_random 1861846 1861904 -2459642 + (CAGGG)n Simple_repeat Simple_repeat 4 59 0 250 292 50 0 chr1_random 1861928 1862048 -2459498 + (CTAGGG)n Simple_repeat Simple_repeat 6 131 0 238 151 0 84 chr1_random 1862052 1862218 -2459328 + (CAGGG)n Simple_repeat Simple_repeat 5 156 0 435 298 43 0 chr1_random 1862258 1862610 -2458936 + (CTAGGG)n Simple_repeat Simple_repeat 1 367 0 310 247 58 35 chr1_random 1862696 1862870 -2458676 + (CTAGGG)n Simple_repeat Simple_repeat 1 178 0 214 148 0 68 chr1_random 1862871 1862959 -2458587 + (CAGGG)n Simple_repeat Simple_repeat 1 82 0 295 309 29 29 chr1_random 1863041 1863216 -2458330 + (CTAGGG)n Simple_repeat Simple_repeat 4 178 0 279 139 8 62 chr1_random 1863273 1863402 -2458144 + (CAGGG)n Simple_repeat Simple_repeat 2 123 0 1581 159 7 41 chr1_random 1863606 1863901 -2457645 + AluJo SINE Alu 27 311 -1 341 250 83 76 chr1_random 1864096 1864240 -2457306 + L2 LINE L2 3169 3313 0 445 184 78 10 chr1_random 1864329 1864432 -2457114 - MER45A DNA AcHobo 0 178 69 225 226 0 59 chr1_random 1865294 1865396 -2456150 + G-rich Low_complexity Low_complexity 3 98 0 779 259 103 33 chr1_random 1866493 1866846 -2454700 - HSREP522 Satellite telomeric -171 377 1 4573 222 68 12 chr1_random 1866981 1868273 -2453273 + L1MB3 LINE L1 2785 4148 -1998 2358 118 98 7 chr1_random 1868273 1868732 -2452814 - HSREP522 Satellite telomeric 0 504 4 506 158 67 39 chr1_random 1868752 1868967 -2452579 - TAR1 Satellite telomeric -355 221 1 1044 136 26 0 chr1_random 1869069 1869223 -2452323 + AluSg/x SINE Alu 144 301 -11 5299 66 12 1 chr1_random 1869570 1870251 -2451295 - L1PA6 LINE L1 0 6154 5467 2274 125 0 6 chr1_random 1870441 1870753 -2450793 - AluSg SINE Alu 0 310 1 1709 228 27 27 chr1_random 1870766 1871209 -2450337 - MLT1C LTR MaLR -24 443 1 2468 141 19 61 chr1_random 1871217 1871346 -2450200 + L1MA8 LINE L1 5719 5852 -439 1852 163 7 23 chr1_random 1871346 1871483 -2450063 + AluJb SINE Alu 1 139 -173 1943 104 107 4 chr1_random 1871483 1871753 -2449793 + AluSp SINE Alu 1 298 -15 1852 163 7 23 chr1_random 1871753 1871922 -2449624 + AluJb SINE Alu 139 302 -10 2468 141 19 61 chr1_random 1871922 1872317 -2449229 + L1MA8 LINE L1 5852 6221 -70 3810 111 84 0 chr1_random 1872322 1872961 -2448585 - HSMAR2 DNA Mariner -5 1297 605 1692 234 28 2 chr1_random 1873639 1874074 -2447472 + L1MB3 LINE L1 4829 5274 -872 1295 162 16 4 chr1_random 1874073 1874320 -2447226 - L1MB3 LINE L1 -235 5948 5699 * 4358 154 45 29 chr1_random 1874321 1874358 -2447188 + L1MB3 LINE L1 5263 5298 -885 1973 130 18 0 chr1_random 1874358 1874642 -2446904 + AluSq SINE Alu 1 289 -24 4358 154 45 29 chr1_random 1874642 1875525 -2446021 + L1MB3 LINE L1 5298 6181 -2 579 107 0 0 chr1_random 1875549 1875624 -2445922 + AluJ/FLAM SINE Alu 3 77 -235 223 304 76 0 chr1_random 1875716 1875795 -2445751 + L2 LINE L2 3168 3252 -20 2069 106 14 3 chr1_random 1875927 1876211 -2445335 + AluSp SINE Alu 1 287 -26 394 186 0 0 chr1_random 1876270 1876340 -2445206 + L1MD3 LINE L1 7914 7983 -12 899 162 0 27 chr1_random 1876340 1876488 -2445058 - AluSx SINE Alu -11 298 155 431 136 57 11 chr1_random 1876495 1876583 -2444963 - AluSx SINE Alu -217 95 4 529 249 61 0 chr1_random 1876837 1877002 -2444544 - L1MB3 LINE L1 -210 5973 5799 828 137 16 0 chr1_random 1877009 1877133 -2444413 + BC200 scRNA scRNA 18 143 -57 755 232 6 0 chr1_random 1877133 1877301 -2444245 - L1MB3 LINE L1 -356 5827 5659 448 319 101 58 chr1_random 1877866 1877899 -2443647 + L1M4 LINE L1 2604 2634 -3512 195 47 23 47 chr1_random 1877899 1877942 -2443604 + (CAAAA)n Simple_repeat Simple_repeat 2 43 0 448 319 101 58 chr1_random 1877942 1878168 -2443378 + L1M4 LINE L1 2634 2888 -3258 1990 154 0 3 chr1_random 1878168 1878466 -2443080 + AluSx SINE Alu 1 297 -15 448 319 101 58 chr1_random 1878466 1878603 -2442943 + L1M4 LINE L1 2888 3018 -3128 266 322 8 0 chr1_random 1878647 1878768 -2442778 + L1M4 LINE L1 2890 3011 -3135 373 319 85 79 chr1_random 1878846 1879188 -2442358 + L1M4 LINE L1 3120 3463 -2683 21 0 0 0 chr1_random 1879611 1879632 -2441914 + AT_rich Low_complexity Low_complexity 1 21 0 2010 91 0 0 chr1_random 1879632 1879897 -2441649 - L1PA8 LINE L1 -2 6170 5906 670 242 88 89 chr1_random 1880232 1881088 -2440458 + L1MDa LINE L1 1883 2830 -3891 888 274 54 70 chr1_random 1881099 1881600 -2439946 + LTR53 LTR ERVL 20 512 -7 1414 216 22 0 chr1_random 1881695 1881963 -2439583 + AluJo SINE Alu 1 274 -38 393 326 70 12 chr1_random 1881963 1882135 -2439411 + L1MDa LINE L1 2974 3155 -3385 1070 178 22 0 chr1_random 1882520 1882705 -2438841 - MER5A DNA MER1_type 0 189 1 294 271 83 14 chr1_random 1882955 1883099 -2438447 + HAL1b LINE L1 397 550 -798 705 256 41 56 chr1_random 1883125 1883395 -2438151 - L2 LINE L2 -4 3309 3044 2053 138 0 7 chr1_random 1883723 1884055 -2437491 + AluSx SINE Alu 1 312 0 2103 116 7 3 chr1_random 1884295 1884589 -2436957 + AluSq SINE Alu 1 295 -18 324 321 59 27 chr1_random 1884635 1884822 -2436724 + L1MCa LINE L1 2265 2457 -3969 268 284 43 7 chr1_random 1884851 1884992 -2436554 + L1MCa LINE L1 2484 2629 -3797 2475 77 0 0 chr1_random 1885072 1885370 -2436176 + AluY SINE Alu 7 304 -7 367 248 97 62 chr1_random 1885384 1885529 -2436017 + L1MC3 LINE L1 6499 6648 -1137 * 391 264 0 22 chr1_random 1885461 1885552 -2435994 - L1MC4 LINE L1 -1339 6703 6615 607 273 40 11 chr1_random 1885552 1885728 -2435818 + MIR SINE MIR 82 262 0 369 360 47 0 chr1_random 1885911 1886061 -2435485 - L3 LINE CR1 -15 1562 1406 1023 108 0 0 chr1_random 1886084 1886256 -2435290 - AluSx SINE Alu 0 325 154 1275 137 0 49 chr1_random 1886259 1886485 -2435061 + AluJo SINE Alu 97 311 -1 299 287 119 20 chr1_random 1886680 1886781 -2434765 + L2 LINE L2 3169 3279 -34 1220 68 20 0 chr1_random 1886798 1886945 -2434601 - AluSx SINE Alu -163 150 1 195 162 0 0 chr1_random 1887041 1887078 -2434468 + (TCCA)n Simple_repeat Simple_repeat 1 37 0 472 303 103 5 chr1_random 1887089 1887284 -2434262 - L2 LINE L2 0 3313 3100 210 308 62 0 chr1_random 1887544 1887609 -2433937 - L3 LINE CR1 -582 995 927 216 234 0 21 chr1_random 1888010 1888057 -2433489 - MIR SINE MIR -63 145 100 364 266 18 71 chr1_random 1888220 1888389 -2433157 + L2 LINE L2 2305 2464 -850 486 105 42 0 chr1_random 1888427 1888522 -2433024 + (TGGA)n Simple_repeat Simple_repeat 3 101 0 573 191 7 20 chr1_random 1888636 1888788 -2432758 + GA-rich Low_complexity Low_complexity 5 154 0 2104 129 0 10 chr1_random 1888807 1889109 -2432437 + AluSx SINE Alu 1 299 -13 276 235 16 28 chr1_random 1889116 1889259 -2432287 + GA-rich Low_complexity Low_complexity 1 144 -378 2356 108 0 0 chr1_random 1889259 1889564 -2431982 + AluSg SINE Alu 1 305 -5 276 235 16 28 chr1_random 1889564 1889645 -2431901 + GA-rich Low_complexity Low_complexity 144 522 0 2868 121 38 26 chr1_random 1890831 1891337 -2430209 - HSMAR2 DNA Mariner -698 604 93 328 271 115 33 chr1_random 1891851 1891973 -2429573 - MIR SINE MIR -7 255 124 734 129 313 0 chr1_random 1891978 1892125 -2429421 - MER46A DNA MER2_type 0 236 44 198 274 39 0 chr1_random 1892147 1892198 -2429348 - MIR SINE MIR -165 97 45 23 0 0 0 chr1_random 1892455 1892478 -2429068 + AT_rich Low_complexity Low_complexity 1 23 0 862 147 8 0 chr1_random 1893055 1893184 -2428362 + FLAM_A SINE Alu 1 130 -3 196 305 145 55 chr1_random 1893369 1893569 -2427977 - L2 LINE L2 -3035 279 62 1262 171 0 24 chr1_random 1894346 1894557 -2426989 + AluJo SINE Alu 85 290 -22 2010 151 3 13 chr1_random 1895652 1895964 -2425582 + AluJb SINE Alu 1 309 -3 270 280 64 6 chr1_random 1895972 1896129 -2425417 + L1ME4a LINE L1 5956 6121 0 474 253 84 0 chr1_random 1896152 1896330 -2425216 + L1MC4a LINE L1 5674 5866 -1942 846 244 98 98 chr1_random 1896365 1896456 -2425090 + L1ME3A LINE L1 5559 5649 -521 267 103 0 0 chr1_random 1896456 1896495 -2425051 + (CA)n Simple_repeat Simple_repeat 2 40 0 846 244 98 98 chr1_random 1896495 1897015 -2424531 + L1ME3A LINE L1 5648 6170 0 327 261 135 9 chr1_random 1899366 1899477 -2422069 + MIR SINE MIR 64 188 -74 191 270 16 16 chr1_random 1899761 1899824 -2421722 + L2 LINE L2 3204 3266 -6 337 336 26 0 chr1_random 1899987 1900103 -2421443 + (CGTG)n Simple_repeat Simple_repeat 4 122 0 2195 109 0 42 chr1_random 1900402 1900714 -2420832 + AluSg SINE Alu 1 299 -11 248 233 0 11 chr1_random 1901931 1902021 -2419525 + (CA)n Simple_repeat Simple_repeat 2 90 0 214 289 122 11 chr1_random 1902117 1902207 -2419339 - MIR SINE MIR -119 143 44 257 254 0 0 chr1_random 1902207 1902262 -2419284 + Tigger5 DNA MER2_type 9 63 -2260 1697 179 7 14 chr1_random 1902383 1902674 -2418872 + AluJo SINE Alu 4 292 -20 420 284 20 14 chr1_random 1902677 1902811 -2418735 - L1MA6 LINE L1 -18 6282 6145 2142 101 14 3 chr1_random 1902811 1903107 -2418439 - AluSq SINE Alu -14 299 1 420 284 20 14 chr1_random 1903107 1903120 -2418426 - L1MA6 LINE L1 -155 6145 6134 2114 70 3 40 chr1_random 1903474 1903775 -2417771 - AluY SINE Alu -21 290 1 407 273 7 49 chr1_random 1903815 1903958 -2417588 + L1MA9 LINE L1 5995 6131 -181 957 121 57 6 chr1_random 1904164 1904321 -2417225 + FRAM SINE Alu 1 165 -11 354 284 155 0 chr1_random 1904504 1904620 -2416926 + L2 LINE L2 3139 3272 0 326 116 0 0 chr1_random 1905000 1905043 -2416503 + Alu SINE Alu 1 43 -259 1979 134 16 10 chr1_random 1905075 1905381 -2416165 - AluSx SINE Alu -4 308 1 264 59 0 0 chr1_random 1905427 1905461 -2416085 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 993 163 47 0 chr1_random 1905501 1905673 -2415873 + MER5A DNA MER1_type 1 180 -9 2224 118 0 10 chr1_random 1905695 1905991 -2415555 - AluSx SINE Alu -19 293 1 2140 118 0 3 chr1_random 1906459 1906755 -2414791 + AluSg SINE Alu 1 295 -15 31 0 0 43 chr1_random 1906900 1906924 -2414622 + AT_rich Low_complexity Low_complexity 1 24 -20 2251 81 44 0 chr1_random 1906924 1907220 -2414326 + AluY SINE Alu 1 309 -2 31 0 0 43 chr1_random 1907220 1907241 -2414305 + AT_rich Low_complexity Low_complexity 24 44 0 2158 79 31 21 chr1_random 1907509 1907799 -2413747 - AluSg1 SINE Alu -16 293 1 1918 129 45 0 chr1_random 1907799 1908085 -2413461 - AluSx SINE Alu -13 299 1 447 298 151 20 chr1_random 1908465 1908757 -2412789 - L1MC/D LINE L1 -2035 5773 5444 684 186 29 21 chr1_random 1908767 1908907 -2412639 - FLAM_C SINE Alu -1 142 2 1860 160 0 3 chr1_random 1908944 1909238 -2412308 - AluJo SINE Alu -19 293 1 21 36 0 0 chr1_random 1909444 1909472 -2412074 + AT_rich Low_complexity Low_complexity 1 28 0 2252 97 14 0 chr1_random 1910656 1910944 -2410602 - AluSx SINE Alu -19 293 2 2301 94 7 0 chr1_random 1911360 1911659 -2409887 - AluSp SINE Alu -12 301 1 2345 83 0 0 chr1_random 1912066 1912354 -2409192 - AluY SINE Alu -23 288 1 394 323 96 35 chr1_random 1913593 1913906 -2407640 + MLT1K LTR MaLR 179 510 -78 214 202 273 20 chr1_random 1914551 1914650 -2406896 + L2 LINE L2 3143 3266 -6 266 296 28 0 chr1_random 1915790 1915861 -2405685 + MIR3 SINE MIR 86 158 -50 273 220 0 34 chr1_random 1916072 1916131 -2405415 + MIR3 SINE MIR 150 206 -2 544 249 47 30 chr1_random 1917027 1917196 -2404350 - MIR SINE MIR -14 248 77 243 238 288 0 chr1_random 1917322 1917402 -2404144 + MIR SINE MIR 79 181 -81 203 323 0 0 chr1_random 1917751 1917813 -2403733 + L2 LINE L2 3209 3270 -2 1457 161 69 66 chr1_random 1919140 1919488 -2402058 + L1ME2 LINE L1 5806 6154 -10 238 344 42 21 chr1_random 1919568 1919664 -2401882 - L2 LINE L2 -20 3252 3155 538 245 54 73 chr1_random 1919695 1919956 -2401590 + MER112 DNA MER1_type 1 256 0 2186 50 0 8 chr1_random 1920183 1920445 -2401101 + AluY SINE Alu 43 302 -9 255 346 0 30 chr1_random 1921090 1921191 -2400355 + MER5A DNA MER1_type 89 186 -3 346 267 41 46 chr1_random 1921782 1921953 -2399593 + MIR SINE MIR 28 199 -63 2208 120 0 46 chr1_random 1922064 1922389 -2399157 + AluSx SINE Alu 1 310 -2 403 299 172 6 chr1_random 1922521 1922678 -2398868 + MIR SINE MIR 46 228 -34 224 329 0 12 chr1_random 1924409 1924494 -2397052 - MIR SINE MIR -12 250 167 387 60 0 0 chr1_random 1924858 1924908 -2396638 + (TG)n Simple_repeat Simple_repeat 2 51 0 916 272 16 24 chr1_random 1924928 1925182 -2396364 - MIR SINE MIR -9 253 2 1237 119 60 0 chr1_random 1925292 1925493 -2396053 + MER20 DNA MER1_type 2 214 -5 182 179 18 0 chr1_random 1926416 1926472 -2395074 + (TA)n Simple_repeat Simple_repeat 1 57 0 243 267 38 48 chr1_random 1926498 1926603 -2394943 - L1MC4 LINE L1 -1324 6718 6615 229 216 0 0 chr1_random 1926604 1926655 -2394891 + (TA)n Simple_repeat Simple_repeat 2 52 0 1749 243 207 51 chr1_random 1926741 1927034 -2394512 + HAL1 LINE L1 23 269 -2238 2531 54 0 10 chr1_random 1927034 1927332 -2394214 + AluY SINE Alu 1 295 -16 1749 243 207 51 chr1_random 1927332 1927953 -2393593 + HAL1 LINE L1 269 1079 -1428 196 313 75 12 chr1_random 1928056 1928136 -2393410 + L2 LINE L2 3137 3221 -51 359 183 0 47 chr1_random 1929083 1929252 -2392294 + (CCCTG)n Simple_repeat Simple_repeat 2 162 0 181 210 32 0 chr1_random 1929327 1929389 -2392157 + (CCCTAG)n Simple_repeat Simple_repeat 1 64 0 304 143 0 80 chr1_random 1929441 1929616 -2391930 + (CCCTG)n Simple_repeat Simple_repeat 1 161 0 329 115 0 85 chr1_random 1929744 1929909 -2391637 + (CCCTG)n Simple_repeat Simple_repeat 5 155 0 241 320 47 0 chr1_random 1929911 1930039 -2391507 + (CCCTAG)n Simple_repeat Simple_repeat 3 136 0 799 182 23 15 chr1_random 1930469 1930601 -2390945 + AluJo/FLAM SINE Alu 1 133 -169 1424 206 50 17 chr1_random 1930603 1930959 -2390587 + AluJo SINE Alu 1 366 0 324 126 84 28 chr1_random 1931049 1931192 -2390354 + (AGATG)n Simple_repeat Simple_repeat 5 155 0 * 746 98 55 30 chr1_random 1931165 1931565 -2389981 + (AAATG)n Simple_repeat Simple_repeat 1 410 0 791 77 59 30 chr1_random 1931577 1931746 -2389800 + (AAATG)n Simple_repeat Simple_repeat 5 178 0 696 95 66 25 chr1_random 1931762 1932003 -2389543 + (AAATG)n Simple_repeat Simple_repeat 1 251 0 691 98 58 29 chr1_random 1932003 1932177 -2389369 + (AGATG)n Simple_repeat Simple_repeat 1 179 0 487 114 79 13 chr1_random 1932177 1932406 -2389140 + (AAATG)n Simple_repeat Simple_repeat 1 244 0 696 63 101 6 chr1_random 1932447 1932606 -2388940 + (AAATG)n Simple_repeat Simple_repeat 5 178 0 504 113 94 12 chr1_random 1932586 1932746 -2388800 + (AGATG)n Simple_repeat Simple_repeat 2 174 0 * 469 116 64 46 chr1_random 1932710 1932883 -2388663 + (AAATG)n Simple_repeat Simple_repeat 3 178 0 * 796 123 47 6 chr1_random 1932909 1933079 -2388467 + (AAATG)n Simple_repeat Simple_repeat 1 177 0 271 167 37 0 chr1_random 1933079 1933133 -2388413 + (AGATG)n Simple_repeat Simple_repeat 3 58 0 562 52 105 26 chr1_random 1933137 1933290 -2388256 + (AAATG)n Simple_repeat Simple_repeat 4 168 0 525 155 33 39 chr1_random 1933326 1933507 -2388039 + (AAATG)n Simple_repeat Simple_repeat 1 180 0 309 143 66 0 chr1_random 1933548 1933639 -2387907 + (AAATG)n Simple_repeat Simple_repeat 5 101 0 640 108 72 12 chr1_random 1933650 1933816 -2387730 + (AAATG)n Simple_repeat Simple_repeat 5 180 0 31 26 0 0 chr1_random 1933890 1933928 -2387618 + AT_rich Low_complexity Low_complexity 1 38 0 2889 205 28 24 chr1_random 1934570 1935281 -2386265 - L1 LINE L1 -1549 4597 3884 3782 170 3 15 chr1_random 1935283 1935943 -2385603 + L1MA5 LINE L1 5642 6293 -7 205 314 0 0 chr1_random 1936258 1936328 -2385218 + MIR SINE MIR 185 254 -8 1967 153 0 3 chr1_random 1936495 1936790 -2384756 - AluSx SINE Alu -18 294 1 1716 173 10 27 chr1_random 1937162 1937462 -2384084 + AluSp SINE Alu 1 295 -18 24 77 0 0 chr1_random 1937931 1937983 -2383563 + AT_rich Low_complexity Low_complexity 1 52 0 270 297 22 0 chr1_random 1939488 1939579 -2381967 + L2 LINE L2 3216 3308 -5 6618 40 0 4 chr1_random 1940337 1941087 -2380459 - L1PA5 LINE L1 0 6154 5408 830 269 16 20 chr1_random 1941838 1942157 -2379389 + MER34C LTR ERV1 70 430 -155 2355 102 0 3 chr1_random 1943071 1943376 -2378170 - AluSq SINE Alu -9 304 1 297 244 75 44 chr1_random 1944152 1944312 -2377234 - MIR3 SINE MIR -41 167 3 303 93 0 0 chr1_random 1945937 1945980 -2375566 + (TA)n Simple_repeat Simple_repeat 2 44 0 1203 195 57 17 chr1_random 1946191 1946497 -2375049 - MLT1D LTR MaLR 0 505 206 223 349 23 8 chr1_random 1946726 1946858 -2374688 - MIR SINE MIR -126 136 3 209 360 99 0 chr1_random 1947656 1947767 -2373779 + MIR SINE MIR 63 184 -78 373 265 29 0 chr1_random 1948083 1948185 -2373361 + MLT2C1 LTR ERVL 2 106 -291 287 244 23 107 chr1_random 1948219 1948330 -2373216 + MLT2C1 LTR ERVL 237 337 -60 4715 175 25 29 chr1_random 1948330 1949255 -2372291 + MER49 LTR ERV1 1 921 -2 287 244 23 107 chr1_random 1949255 1949274 -2372272 + MLT2C1 LTR ERVL 337 356 -41 887 239 0 0 chr1_random 1949285 1949473 -2372073 + ERVL LTR ERVL 1002 1189 -4575 358 148 20 0 chr1_random 1949475 1949576 -2371970 + (TTGG)n Simple_repeat Simple_repeat 1 103 0 3021 265 33 6 chr1_random 1949583 1950398 -2371148 + ERVL LTR ERVL 1174 2010 -3754 417 286 0 0 chr1_random 1950403 1950508 -2371038 - FLAM_C SINE Alu -28 105 1 2107 90 25 59 chr1_random 1950602 1950781 -2370765 - AluSg SINE Alu 0 310 145 2136 110 7 19 chr1_random 1950781 1951089 -2370457 - AluY SINE Alu -7 304 1 2107 90 25 59 chr1_random 1951089 1951230 -2370316 - AluSg SINE Alu -165 145 1 371 56 0 18 chr1_random 1951656 1951727 -2369819 + Alu SINE Alu 1 49 -253 265 320 20 20 chr1_random 1951739 1951886 -2369660 + T-rich Low_complexity Low_complexity 5 151 0 207 198 12 23 chr1_random 1951893 1951979 -2369567 + CT-rich Low_complexity Low_complexity 5 89 0 231 291 0 26 chr1_random 1952171 1952288 -2369258 + T-rich Low_complexity Low_complexity 5 118 0 2188 119 3 7 chr1_random 1952429 1952732 -2368814 - AluSx SINE Alu -10 302 1 2129 109 18 3 chr1_random 1952744 1953029 -2368517 - AluSc SINE Alu -20 289 1 1537 208 7 7 chr1_random 1953355 1953648 -2367898 - AluJo SINE Alu -19 293 1 955 223 173 47 chr1_random 1953655 1954019 -2367527 - L1MC4 LINE L1 -1 8041 7632 204 294 0 39 chr1_random 1954472 1954574 -2366972 + GA-rich Low_complexity Low_complexity 1 98 0 2330 87 0 0 chr1_random 1954805 1955094 -2366452 - AluSc SINE Alu -19 290 2 2522 84 3 0 chr1_random 1955233 1955541 -2366005 - AluSp SINE Alu -4 309 1 24 32 0 0 chr1_random 1955649 1955680 -2365866 + AT_rich Low_complexity Low_complexity 1 31 0 386 281 102 47 chr1_random 1958594 1958868 -2362678 + LTR16C LTR ERVL 110 398 -93 1492 241 104 13 chr1_random 1959316 1959769 -2361777 + MLT1D LTR MaLR 12 505 0 2882 37 3 6 chr1_random 1960070 1960421 -2361125 - L1PA5 LINE L1 0 6154 5805 266 331 36 43 chr1_random 1960712 1960851 -2360695 + MIR3 SINE MIR 9 146 -62 768 284 100 17 chr1_random 1961210 1961634 -2359912 - MLT1D LTR MaLR 0 505 43 410 0 20 0 chr1_random 1961720 1961770 -2359776 + (TC)n Simple_repeat Simple_repeat 2 52 0 3678 163 54 40 chr1_random 1961847 1962696 -2358850 - MER4D LTR ERV1 0 827 1 438 335 42 11 chr1_random 1965097 1965288 -2356258 - HERVL LTR ERVL -3191 2463 2267 435 320 84 32 chr1_random 1966599 1966946 -2354600 + L2 LINE L2 2451 2815 -499 239 250 21 28 chr1_random 1967702 1967846 -2353700 + GA-rich Low_complexity Low_complexity 1 143 0 1487 234 73 26 chr1_random 1967870 1968575 -2352971 - L1M4 LINE L1 -4994 1548 820 261 326 11 0 chr1_random 1968760 1968849 -2352697 - L1M4 LINE L1 -5842 700 611 1354 56 0 12 chr1_random 1968864 1969024 -2352522 - AluSp SINE Alu -154 159 2 2025 158 0 6 chr1_random 1969031 1969342 -2352204 - AluSx SINE Alu -3 309 1 228 375 17 0 chr1_random 1970397 1970517 -2351029 + L2 LINE L2 2909 3030 -242 237 286 14 0 chr1_random 1970711 1970781 -2350765 + L2 LINE L2 3202 3272 0 187 308 0 0 chr1_random 1970826 1970878 -2350668 - MIR SINE MIR -10 252 201 348 239 48 80 chr1_random 1970980 1971168 -2350378 + L1ME4a LINE L1 5887 6068 -53 264 59 0 0 chr1_random 1971659 1971693 -2349853 + (A)n Simple_repeat Simple_repeat 1 34 0 26 50 0 0 chr1_random 1972727 1972767 -2348779 + AT_rich Low_complexity Low_complexity 1 40 0 496 283 0 0 chr1_random 1974859 1974972 -2346574 - MER81 DNA DNA -1 113 1 2357 87 0 7 chr1_random 1975051 1975350 -2346196 - AluY SINE Alu -14 297 1 2387 70 0 10 chr1_random 1975370 1975670 -2345876 - AluY SINE Alu 0 311 15 189 295 95 21 chr1_random 1975807 1975902 -2345644 - MIR SINE MIR -130 132 31 1068 176 25 15 chr1_random 1975948 1976152 -2345394 - MER20 DNA MER1_type -6 213 8 195 162 0 0 chr1_random 1977176 1977213 -2344333 + A-rich Low_complexity Low_complexity 1 37 0 2394 93 0 3 chr1_random 1978873 1979174 -2342372 + AluSx SINE Alu 1 300 -12 446 219 82 14 chr1_random 1979505 1979651 -2341895 - L1ME4a LINE L1 0 6121 5966 415 286 166 14 chr1_random 1979775 1979992 -2341554 - L1ME4a LINE L1 -360 5761 5512 331 224 54 82 chr1_random 1980020 1980167 -2341379 - L1ME4a LINE L1 -678 5443 5301 478 344 5 11 chr1_random 1980237 1980426 -2341120 + MIR3 SINE MIR 15 202 -6 746 108 0 0 chr1_random 1983319 1983421 -2338125 - LTR12 LTR ERV1 0 714 613 * 1526 84 0 75 chr1_random 1983412 1983638 -2337908 - LTR12 LTR ERV1 -503 211 3 1620 173 10 27 chr1_random 1983679 1983979 -2337567 - AluJo SINE Alu 0 312 18 552 211 14 42 chr1_random 1983982 1984124 -2337422 - AluJo SINE Alu -173 139 2 221 219 0 0 chr1_random 1984414 1984455 -2337091 - L2 LINE L2 -10 3303 3263 243 0 0 0 chr1_random 1984695 1984722 -2336824 + (A)n Simple_repeat Simple_repeat 1 27 0 564 226 231 20 chr1_random 1985456 1985655 -2335891 + MIR SINE MIR 22 262 0 626 203 112 68 chr1_random 1987841 1987883 -2333663 - L1M4 LINE L1 -3428 2718 2679 2456 30 40 14 chr1_random 1987883 1988179 -2333367 + AluY SINE Alu 1 304 -7 626 203 112 68 chr1_random 1988179 1988387 -2333159 - L1M4 LINE L1 -3467 2679 2457 425 80 0 80 chr1_random 1988494 1988632 -2332914 + (GCTG)n Simple_repeat Simple_repeat 4 130 0 373 60 0 60 chr1_random 1988674 1988757 -2332789 + (GCTG)n Simple_repeat Simple_repeat 4 81 0 775 57 0 62 chr1_random 1988788 1988964 -2332582 + (GCTG)n Simple_repeat Simple_repeat 2 166 0 454 65 0 80 chr1_random 1988984 1989122 -2332424 + (GCTG)n Simple_repeat Simple_repeat 2 128 0 708 68 0 75 chr1_random 1989205 1989499 -2332047 + (GCTG)n Simple_repeat Simple_repeat 1 272 0 225 223 58 14 chr1_random 1989739 1989878 -2331668 + (TA)n Simple_repeat Simple_repeat 1 145 0 * 269 227 22 54 chr1_random 1989866 1990051 -2331495 + (CATATA)n Simple_repeat Simple_repeat 2 180 0 * 342 206 46 29 chr1_random 1989924 1990099 -2331447 + (TA)n Simple_repeat Simple_repeat 2 179 0 24 0 0 0 chr1_random 1990158 1990182 -2331364 + AT_rich Low_complexity Low_complexity 1 24 0 1917 130 3 3 chr1_random 1990606 1990891 -2330655 + AluSq SINE Alu 24 308 -5 235 245 33 20 chr1_random 1991378 1991529 -2330017 + (TA)n Simple_repeat Simple_repeat 1 153 0 30 77 0 0 chr1_random 1991601 1991666 -2329880 + AT_rich Low_complexity Low_complexity 1 65 0 316 134 87 7 chr1_random 1991668 1991817 -2329729 + (TA)n Simple_repeat Simple_repeat 2 162 0 260 172 17 0 chr1_random 1992036 1992094 -2329452 + (TA)n Simple_repeat Simple_repeat 2 60 0 26 0 0 0 chr1_random 1992196 1992222 -2329324 + AT_rich Low_complexity Low_complexity 1 26 0 180 0 0 0 chr1_random 1992313 1992333 -2329213 + (TC)n Simple_repeat Simple_repeat 2 21 0 262 261 31 12 chr1_random 1992333 1992494 -2329052 + (TA)n Simple_repeat Simple_repeat 2 165 0 26 0 0 0 chr1_random 1992568 1992594 -2328952 + AT_rich Low_complexity Low_complexity 1 26 0 2199 99 0 0 chr1_random 1992610 1992882 -2328664 + AluSx SINE Alu 12 283 -29 313 259 6 30 chr1_random 1992959 1993125 -2328421 + (TATAA)n Simple_repeat Simple_repeat 5 166 0 241 287 0 33 chr1_random 1993147 1993328 -2328218 + (TATAA)n Simple_repeat Simple_repeat 5 179 0 * 247 276 29 11 chr1_random 1993297 1993471 -2328075 + (TA)n Simple_repeat Simple_repeat 2 178 0 26 104 0 0 chr1_random 1993507 1993603 -2327943 + AT_rich Low_complexity Low_complexity 1 96 0 26 0 0 0 chr1_random 1994240 1994266 -2327280 + AT_rich Low_complexity Low_complexity 1 26 0 22 56 0 0 chr1_random 1994490 1994526 -2327020 + AT_rich Low_complexity Low_complexity 1 36 0 189 154 0 0 chr1_random 1994630 1994669 -2326877 + (CA)n Simple_repeat Simple_repeat 2 40 0 259 276 37 6 chr1_random 1994710 1994873 -2326673 + (TA)n Simple_repeat Simple_repeat 2 169 0 238 233 20 34 chr1_random 1994939 1995085 -2326461 + (TA)n Simple_repeat Simple_repeat 1 144 0 23 0 0 0 chr1_random 1995085 1995108 -2326438 + AT_rich Low_complexity Low_complexity 1 23 0 330 286 8 0 chr1_random 1995427 1995553 -2325993 + (CA)n Simple_repeat Simple_repeat 2 128 0 417 314 0 6 chr1_random 1995617 1995792 -2325754 + (CA)n Simple_repeat Simple_repeat 1 174 0 2290 92 0 3 chr1_random 1995860 1996155 -2325391 + AluSx SINE Alu 1 294 -18 1112 151 0 0 chr1_random 1996155 1996321 -2325225 + AluSg/x SINE Alu 134 299 -13 284 326 6 6 chr1_random 1996333 1996505 -2325041 + (CA)n Simple_repeat Simple_repeat 1 172 0 257 195 0 11 chr1_random 1996521 1996608 -2324938 + (CA)n Simple_repeat Simple_repeat 1 86 0 381 22 0 0 chr1_random 1997991 1998037 -2323509 + (TTA)n Simple_repeat Simple_repeat 3 48 0 587 176 0 0 chr1_random 1998037 1998139 -2323407 - L1PA16 LINE L1 -25 6141 6040 2341 104 0 0 chr1_random 1998273 1998570 -2322976 + AluSx SINE Alu 1 297 -15 1353 197 14 10 chr1_random 1998679 1999116 -2322430 - L1PA16 LINE L1 -133 6033 5718 894 150 12 12 chr1_random 1999110 1999270 -2322276 - L1PA16 LINE L1 -245 5921 5762 * 955 164 0 6 chr1_random 1999270 1999429 -2322117 - L1PA16 LINE L1 -247 5919 5762 867 171 6 6 chr1_random 1999430 1999588 -2321958 - L1PA16 LINE L1 -248 5918 5761 1704 143 0 67 chr1_random 1999589 1999826 -2321720 - L1PA16 LINE L1 -249 5917 5707 2095 106 7 0 chr1_random 1999826 2000101 -2321445 + AluSx SINE Alu 23 299 -13 1704 143 0 67 chr1_random 2000101 2000192 -2321354 - L1PA16 LINE L1 -459 5707 5611 1774 154 7 118 chr1_random 2000197 2000469 -2321077 - L1PA16 LINE L1 -22 6144 5934 3374 97 2 2 chr1_random 2000469 2000911 -2320635 + L1PA7 LINE L1 5708 6149 -5 1774 154 7 118 chr1_random 2000911 2001061 -2320485 - L1PA16 LINE L1 -232 5934 5769 298 65 0 0 chr1_random 2001058 2001104 -2320442 + L1PA13 LINE L1 5989 6034 -129 * 1960 145 0 0 chr1_random 2001108 2001390 -2320156 + AluSx SINE Alu 1 282 -30 721 131 0 0 chr1_random 2001563 2001662 -2319884 - AluS SINE Alu -213 100 2 290 265 125 44 chr1_random 2001665 2001722 -2319824 - L1MEd LINE L1 -3746 2383 2332 1891 141 18 0 chr1_random 2001722 2002183 -2319363 + AluSx SINE Alu 3 468 0 290 265 125 44 chr1_random 2002183 2002445 -2319101 - L1MEd LINE L1 -3797 2332 2067 838 236 23 27 chr1_random 2002462 2002682 -2318864 - L1ME1 LINE L1 -23 6143 5925 22 35 0 0 chr1_random 2002904 2002933 -2318613 + AT_rich Low_complexity Low_complexity 1 29 0 1666 160 11 18 chr1_random 2002945 2003227 -2318319 + AluJo SINE Alu 1 280 -32 2417 85 0 3 chr1_random 2003313 2003620 -2317926 - AluY SINE Alu -5 306 1 1022 270 189 13 chr1_random 2003622 2004301 -2317245 - L1MEd LINE L1 -4579 1731 896 * 4679 161 29 38 chr1_random 2004296 2004768 -2316778 - L1MB7 LINE L1 0 6184 5709 2298 69 0 10 chr1_random 2004768 2005103 -2316443 - AluY SINE Alu 0 311 1 4679 161 29 38 chr1_random 2005103 2005849 -2315697 - L1MB7 LINE L1 -475 5709 4976 316 330 84 59 chr1_random 2005851 2006124 -2315422 - L1MEd LINE L1 -5242 877 598 240 296 111 0 chr1_random 2007613 2007694 -2313852 - MIR SINE MIR -124 138 49 191 304 29 14 chr1_random 2007709 2007778 -2313768 + L2 LINE L2 3226 3295 -18 2353 99 7 0 chr1_random 2010488 2010792 -2310754 + AluSq SINE Alu 1 306 -7 203 340 191 0 chr1_random 2010941 2011088 -2310458 + L2 LINE L2 2553 2727 -587 2206 199 103 76 chr1_random 2011090 2011787 -2309759 + L1MC4a LINE L1 7093 7808 0 226 376 77 17 chr1_random 2012106 2012223 -2309323 + L2 LINE L2 3100 3223 -49 288 214 95 0 chr1_random 2012357 2012441 -2309105 - MIR3 SINE MIR -9 199 108 22 0 0 0 chr1_random 2013313 2013335 -2308211 + AT_rich Low_complexity Low_complexity 1 22 0 446 273 87 13 chr1_random 2014202 2014352 -2307194 + MIR3 SINE MIR 20 180 -28 * 1569 260 117 17 chr1_random 2014343 2015188 -2306358 + L2 LINE L2 2382 3313 0 194 378 161 4 chr1_random 2015299 2015529 -2306017 + L2 LINE L2 2566 2831 -483 2091 110 13 13 chr1_random 2016882 2017183 -2304363 + AluSx SINE Alu 1 301 -11 306 181 206 26 chr1_random 2017271 2017426 -2304120 + L1ME4a LINE L1 5826 6008 -113 183 162 0 0 chr1_random 2017857 2017894 -2303652 + A-rich Low_complexity Low_complexity 1 37 0 837 243 50 38 chr1_random 2018343 2018582 -2302964 + MIR SINE MIR 2 243 -19 2093 137 0 0 chr1_random 2018769 2019084 -2302462 - AluSx SINE Alu 0 312 1 301 292 113 15 chr1_random 2019415 2019713 -2301833 + L1MC4 LINE L1 7312 7749 -293 368 156 23 39 chr1_random 2019908 2020036 -2301510 + GA-rich Low_complexity Low_complexity 2 127 0 420 152 11 104 chr1_random 2020094 2020204 -2301342 + L1ME3A LINE L1 5672 5771 -397 350 219 16 0 chr1_random 2020204 2020268 -2301278 - MER81 DNA DNA -49 65 1 673 209 34 47 chr1_random 2020826 2020974 -2300572 + FRAM SINE Alu 1 146 -30 315 0 0 0 chr1_random 2020978 2021013 -2300533 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 333 198 43 78 chr1_random 2021023 2021139 -2300407 + L1M4c LINE L1 1496 1607 -4777 * 1109 191 35 23 chr1_random 2021133 2021390 -2300156 + L1ME3A LINE L1 5906 6165 -5 242 271 17 0 chr1_random 2023270 2023329 -2298217 - MER5B DNA MER1_type -62 116 57 229 179 26 77 chr1_random 2023331 2023350 -2298196 - L1MA10 LINE L1 -1 6333 6315 1455 195 48 90 chr1_random 2023350 2023827 -2297719 - L1ME1 LINE L1 -5 6161 5705 2098 181 31 72 chr1_random 2023829 2024344 -2297202 - MLT1D LTR MaLR -11 494 1 1922 208 43 29 chr1_random 2024344 2024987 -2296559 - L1ME1 LINE L1 -458 5708 5055 830 134 45 0 chr1_random 2226081 2226215 -2095331 - LTR39 LTR ERV1 -643 140 1 26 0 0 0 chr1_random 2226527 2226553 -2094993 + AT_rich Low_complexity Low_complexity 1 26 0 21 0 0 0 chr1_random 2227062 2227083 -2094463 + AT_rich Low_complexity Low_complexity 1 21 0 46 74 0 0 chr1_random 2227196 2227291 -2094255 + AT_rich Low_complexity Low_complexity 1 95 0 265 257 0 14 chr1_random 2227483 2227553 -2093993 + CT-rich Low_complexity Low_complexity 2 70 0 1264 184 69 23 chr1_random 2227873 2228134 -2093412 + LTR39 LTR ERV1 511 783 0 567 303 13 30 chr1_random 2228945 2229176 -2092370 + MIR SINE MIR 36 262 0 1062 130 0 3 chr1_random 2229288 2229648 -2091898 + (GGGAGA)n Simple_repeat Simple_repeat 1 360 0 694 133 17 22 chr1_random 2229654 2229834 -2091712 + GA-rich Low_complexity Low_complexity 2 180 0 224 200 10 0 chr1_random 2229971 2230071 -2091475 + (TA)n Simple_repeat Simple_repeat 2 102 0 2221 123 64 31 chr1_random 2230071 2230090 -2091456 + MER31A LTR ERV1 82 99 -386 468 51 0 0 chr1_random 2230090 2230149 -2091397 + (TAGA)n Simple_repeat Simple_repeat 3 61 0 2221 123 64 31 chr1_random 2230149 2230520 -2091026 + MER31A LTR ERV1 99 485 0 232 287 35 70 chr1_random 2231016 2231131 -2090415 - MIR SINE MIR -94 114 4 1264 188 144 82 chr1_random 2231946 2232383 -2089163 + MLT1C LTR MaLR 1 464 -3 1059 120 24 58 chr1_random 2233655 2233863 -2087683 + THE1C LTR MaLR 175 375 0 1757 204 34 22 chr1_random 2233974 2234331 -2087215 - MLT1A1 LTR MaLR -4 361 1 25 0 0 0 chr1_random 2236118 2236143 -2085403 + AT_rich Low_complexity Low_complexity 1 25 0 2172 147 0 0 chr1_random 2236202 2236514 -2085032 - AluSx SINE Alu 0 312 1 3074 94 37 7 chr1_random 2236625 2237060 -2084486 - MER83 LTR ERV1 0 448 1 333 0 0 0 chr1_random 2237088 2237125 -2084421 + (CA)n Simple_repeat Simple_repeat 2 38 0 449 265 133 14 chr1_random 2237130 2237341 -2084205 - MIR SINE MIR -4 258 23 647 130 0 0 chr1_random 2237885 2237985 -2083561 + AluSg/x SINE Alu 210 309 -1 237 271 71 0 chr1_random 2237995 2238065 -2083481 - MER91A DNA MER1_type -2 194 120 752 148 9 0 chr1_random 2238293 2238408 -2083138 + AluJb SINE Alu 2 117 -195 817 159 117 14 chr1_random 2238514 2238659 -2082887 - AluSx SINE Alu -152 160 1 743 246 121 25 chr1_random 2238917 2239197 -2082349 - MLT1I LTR MaLR -33 376 70 2194 140 0 0 chr1_random 2239443 2239750 -2081796 + AluSx SINE Alu 3 309 -3 220 300 0 0 chr1_random 2240607 2240677 -2080869 - MIR SINE MIR -83 179 110 1528 129 4 52 chr1_random 2240726 2240974 -2080572 - LTR8 LTR ERV1 0 691 456 * 3628 86 20 25 chr1_random 2240973 2241483 -2080063 - LTR8 LTR ERV1 -184 507 1 1783 255 77 40 chr1_random 2241530 2242126 -2079420 + MLT1E2 LTR MaLR 1 618 -8 949 175 90 0 chr1_random 2242562 2242773 -2078773 - Charlie5 DNA MER1_type 0 2623 2394 659 123 0 9 chr1_random 2243067 2243181 -2078365 + (TCCCC)n Simple_repeat Simple_repeat 1 113 0 219 114 0 0 chr1_random 2243387 2243422 -2078124 + (TTCA)n Simple_repeat Simple_repeat 4 38 0 425 206 72 0 chr1_random 2243439 2243536 -2078010 - MLT2D LTR ERVL 0 515 412 3119 133 109 56 chr1_random 2243536 2243690 -2077856 + MER4A LTR ERV1 1 145 -519 2281 129 43 3 chr1_random 2243690 2244040 -2077506 - THE1B LTR MaLR 0 364 1 3119 133 109 56 chr1_random 2244040 2244515 -2077031 + MER4A LTR ERV1 145 664 0 1131 259 29 3 chr1_random 2244515 2244828 -2076718 - MLT2D LTR ERVL -93 321 1 343 335 19 19 chr1_random 2245304 2245465 -2076081 + MIR SINE MIR 23 183 -79 467 101 13 0 chr1_random 2247927 2248006 -2073540 + (GA)n Simple_repeat Simple_repeat 1 80 0 221 116 0 23 chr1_random 2250096 2250139 -2071407 + (GGGAGA)n Simple_repeat Simple_repeat 4 45 0 3118 146 46 21 chr1_random 2250223 2250783 -2070763 - MER4B LTR ERV1 -36 574 1 287 240 62 62 chr1_random 2251517 2251576 -2069970 + L2 LINE L2 3170 3231 -41 1622 175 82 20 chr1_random 2251576 2251919 -2069627 - THE1B LTR MaLR 0 364 1 287 240 62 62 chr1_random 2251919 2251955 -2069591 + L2 LINE L2 3230 3265 -7 422 214 21 29 chr1_random 2251955 2252095 -2069451 - LTR37A LTR ERV1 0 426 288 14080 94 8 15 chr1_random 2252095 2254135 -2067411 + HERVH LTR ERV1 962 2987 -4726 823 160 20 13 chr1_random 2254129 2254279 -2067267 + HERVH LTR ERV1 3140 3290 -4423 * 3460 111 0 4 chr1_random 2254278 2254774 -2066772 + HERVH LTR ERV1 3500 3993 -3720 4304 151 1 1 chr1_random 2254776 2255438 -2066108 + HERVH LTR ERV1 4488 5149 -2564 1377 119 20 0 chr1_random 2255469 2255671 -2065875 + HERVH LTR ERV1 5614 5819 -1894 * 2509 84 48 13 chr1_random 2255669 2256048 -2065498 + HERVH LTR ERV1 7322 7713 0 3414 60 5 7 chr1_random 2256048 2256497 -2065049 + LTR7 LTR ERV1 1 448 -2 1028 136 68 0 chr1_random 2256506 2256668 -2064878 - THE1C LTR MaLR -202 173 1 962 216 117 44 chr1_random 2256705 2257090 -2064456 - LTR37A LTR ERV1 -1 425 13 1903 121 79 0 chr1_random 2257828 2258108 -2063438 + AluSg SINE Alu 1 302 -8 662 223 7 13 chr1_random 2258217 2258685 -2062861 + (TCCA)n Simple_repeat Simple_repeat 1 464 0 252 264 77 55 chr1_random 2258712 2258803 -2062743 - L2 LINE L2 -20 3252 3160 491 163 11 0 chr1_random 2258809 2258901 -2062645 + L2 LINE L2 2490 2582 -732 569 334 83 31 chr1_random 2258963 2259442 -2062104 + L2 LINE L2 2809 3312 -1 380 263 11 0 chr1_random 2259525 2259620 -2061926 + MER34 LTR ERV1 1 96 -446 318 212 107 93 chr1_random 2259807 2260099 -2061447 + LTR49 LTR ERV1 389 594 -1 * 634 171 47 118 chr1_random 2260099 2260296 -2061250 + MER20 DNA MER1_type 38 219 0 2326 220 86 31 chr1_random 2260333 2260929 -2060617 - L1ME2 LINE L1 -9 6155 5516 434 167 21 10 chr1_random 2260929 2261025 -2060521 - L1PA14 LINE L1 0 6161 6065 2326 220 86 31 chr1_random 2261025 2261105 -2060441 - L1ME2 LINE L1 -648 5516 5442 1782 136 4 8 chr1_random 2261740 2261998 -2059548 + AluSx SINE Alu 1 257 -55 549 224 28 7 chr1_random 2262324 2262467 -2059079 - MIR SINE MIR -22 240 95 237 313 86 17 chr1_random 2262794 2263085 -2058461 - L1MC/D LINE L1 -756 5603 5293 417 301 65 42 chr1_random 2263678 2264229 -2057317 - L1MC/D LINE L1 -1786 4360 3797 21 71 0 0 chr1_random 2264234 2264276 -2057270 + AT_rich Low_complexity Low_complexity 1 42 0 214 140 0 40 chr1_random 2264292 2264342 -2057204 + (TTTTTA)n Simple_repeat Simple_repeat 6 53 0 405 293 93 46 chr1_random 2265078 2265337 -2056209 + MLT1H LTR MaLR 79 349 -200 337 213 38 0 chr1_random 2265794 2265874 -2055672 + MLT1H LTR MaLR 104 186 -363 1112 200 87 8 chr1_random 2267677 2267942 -2053604 + L1MB3 LINE L1 5621 5906 -277 544 151 8 17 chr1_random 2267976 2268095 -2053451 + (TGGA)n Simple_repeat Simple_repeat 4 121 0 822 291 72 56 chr1_random 2268098 2268597 -2052949 - LTR33 LTR ERVL -14 507 1 281 330 90 0 chr1_random 2268597 2268697 -2052849 - L2 LINE L2 -13 3300 3192 23 33 0 0 chr1_random 2268708 2268738 -2052808 + AT_rich Low_complexity Low_complexity 1 30 0 1159 222 14 0 chr1_random 2268879 2269095 -2052451 - MER58A DNA MER1_type -5 219 1 1668 161 164 24 chr1_random 2271128 2271457 -2050089 - THE1C LTR MaLR 0 375 1 767 255 122 42 chr1_random 2271843 2272196 -2049350 - MER21B LTR ERV1 -124 739 359 1213 246 53 31 chr1_random 2272202 2272523 -2049023 - MER21B LTR ERV1 -436 427 100 349 287 40 0 chr1_random 2272556 2272657 -2048889 - MER21B LTR ERV1 -757 106 2 1525 208 90 25 chr1_random 2274844 2275006 -2046540 + MLT1B LTR MaLR 1 151 -239 291 28 0 0 chr1_random 2275006 2275042 -2046504 + (TC)n Simple_repeat Simple_repeat 1 36 0 1525 208 90 25 chr1_random 2275042 2275245 -2046301 + MLT1B LTR MaLR 151 390 0 2066 119 54 40 chr1_random 2275453 2275823 -2045723 - THE1C LTR MaLR 0 375 1 907 290 35 14 chr1_random 2275922 2276284 -2045262 - L1MC4 LINE L1 -897 6996 6541 457 332 152 27 chr1_random 2276293 2276950 -2044596 + L2 LINE L2 1707 2445 -869 389 286 14 29 chr1_random 2277019 2277159 -2044387 + MIR SINE MIR 107 244 -18 334 245 47 28 chr1_random 2277479 2277518 -2044028 + MLT1K LTR MaLR 321 358 -230 2606 105 11 30 chr1_random 2277518 2277888 -2043658 + THE1B LTR MaLR 1 363 -1 334 245 47 28 chr1_random 2277888 2277954 -2043592 + MLT1K LTR MaLR 358 428 -160 422 273 45 66 chr1_random 2277983 2278181 -2043365 + MLT1K LTR MaLR 395 588 0 717 272 95 69 chr1_random 2278695 2279085 -2042461 + LTR16C LTR ERVL 89 488 -3 1803 238 70 23 chr1_random 2279302 2279546 -2042000 + MER74B LTR ERVL 58 289 -333 2443 127 8 27 chr1_random 2279546 2279916 -2041630 - THE1B LTR MaLR 0 364 2 1803 238 70 23 chr1_random 2279916 2280200 -2041346 + MER74B LTR ERVL 289 611 -11 1166 278 101 12 chr1_random 2281590 2282154 -2039392 - L1MEc LINE L1 -3201 3014 2401 3528 59 20 2 chr1_random 2282154 2282594 -2038952 + LTR7 LTR ERV1 1 448 -2 20492 91 11 23 chr1_random 2282596 2285627 -2035919 + HERVH LTR ERV1 1 2995 -4718 893 136 27 0 chr1_random 2285606 2285753 -2035793 + HERVH LTR ERV1 3140 3290 -4423 * 29224 68 9 4 chr1_random 2285742 2290008 -2031538 + HERVH LTR ERV1 3491 7713 0 3780 58 0 2 chr1_random 2290008 2290457 -2031089 + LTR7 LTR ERV1 1 448 -2 281 267 81 32 chr1_random 2290507 2290736 -2030810 - L1MEc LINE L1 -3907 2308 2115 562 272 59 12 chr1_random 2290756 2291010 -2030536 + L1M4 LINE L1 2941 3206 -2940 3689 255 62 34 chr1_random 2291015 2292220 -2029326 + L1MB8 LINE L1 5 1243 -5299 * 5990 164 27 10 chr1_random 2292215 2294204 -2027342 + L1PB3 LINE L1 4126 6154 0 2279 229 38 38 chr1_random 2294211 2295013 -2026533 + L1MB8 LINE L1 1227 2040 -4606 451 265 74 56 chr1_random 2295224 2295858 -2025688 + L1MB8 LINE L1 2160 2762 -3882 1859 211 28 60 chr1_random 2295961 2296157 -2025389 + L1MB8 LINE L1 2815 3016 -3628 895 174 0 0 chr1_random 2296157 2296289 -2025257 + FLAM_C SINE Alu 2 133 0 1859 211 28 60 chr1_random 2296289 2296660 -2024886 + L1MB8 LINE L1 3016 3364 -3280 4733 221 51 29 chr1_random 2296671 2297115 -2024431 + L1MB8 LINE L1 4319 4751 -1893 2978 89 3 0 chr1_random 2297115 2297476 -2024070 - THE1B LTR MaLR -2 362 1 4733 221 51 29 chr1_random 2297476 2298432 -2023114 + L1MB8 LINE L1 4751 5751 -893 1782 239 16 3 chr1_random 2298432 2298809 -2022737 + MER92B LTR ERV1 1 382 -254 3904 203 32 31 chr1_random 2298827 2299774 -2021772 + L1MB8 LINE L1 5726 6674 -2 1054 238 4 4 chr1_random 2299787 2300068 -2021478 + L1ME3A LINE L1 2272 2552 -3594 1349 272 97 12 chr1_random 2300101 2300671 -2020875 - L1M4 LINE L1 -2060 4086 3469 1947 96 15 99 chr1_random 2300702 2301036 -2020510 - AluSx SINE Alu -6 306 1 300 271 21 0 chr1_random 2301091 2301187 -2020359 + L1ME3A LINE L1 4945 5042 -1104 2438 111 34 12 chr1_random 2301190 2301611 -2019935 - LTR23 LTR ERV1 -5 462 1 772 253 11 22 chr1_random 2301612 2301972 -2019574 - LTR23-int LTR ERV1 0 5123 4701 25 0 0 0 chr1_random 2302083 2302108 -2019438 + AT_rich Low_complexity Low_complexity 1 25 0 3095 224 24 5 chr1_random 2302190 2302824 -2018722 - MER82 DNA MER2_type -6 647 2 1310 237 106 36 chr1_random 2302840 2303283 -2018263 + L1ME3A LINE L1 5624 6097 -73 2533 168 44 44 chr1_random 2303452 2303816 -2017730 - MER34B LTR ERV1 0 565 199 2832 73 6 8 chr1_random 2303816 2304172 -2017374 + THE1A LTR MaLR 1 355 0 2533 168 44 44 chr1_random 2304172 2304371 -2017175 - MER34B LTR ERV1 -365 200 2 362 294 0 0 chr1_random 2304920 2305005 -2016541 + L2 LINE L2 3210 3294 -19 2938 80 0 11 chr1_random 2305846 2306208 -2015338 - THE1B LTR MaLR -4 360 3 2797 158 19 55 chr1_random 2306223 2306750 -2014796 - LTR54 LTR ERV1 -2 508 1 396 234 11 11 chr1_random 2306756 2306850 -2014696 + LTR37B LTR ERV1 21 114 -354 698 223 51 15 chr1_random 2306856 2306906 -2014640 - MER3 DNA MER1_type -5 204 157 290 26 26 0 chr1_random 2306906 2306945 -2014601 + (TTAA)n Simple_repeat Simple_repeat 1 40 0 698 223 51 15 chr1_random 2306945 2307091 -2014455 - MER3 DNA MER1_type -52 157 1 840 218 182 26 chr1_random 2307094 2307401 -2014145 + LTR37B LTR ERV1 114 468 0 2934 148 14 19 chr1_random 2307818 2308102 -2013444 + MER31A LTR ERV1 1 284 -201 2203 110 0 17 chr1_random 2308102 2308403 -2013143 - AluSx SINE Alu 0 312 17 2934 148 14 19 chr1_random 2308403 2308605 -2012941 + MER31A LTR ERV1 284 485 0 520 261 77 101 chr1_random 2308654 2309068 -2012478 + MER31A-int LTR ERV1 15 418 -4518 981 177 118 70 chr1_random 2309206 2309641 -2011905 + MER31A-int LTR ERV1 889 1302 -3569 323 0 48 0 chr1_random 2309641 2309683 -2011863 + (TTTG)n Simple_repeat Simple_repeat 2 45 0 981 177 118 70 chr1_random 2309683 2309770 -2011776 + MER31A-int LTR ERV1 1302 2120 -2751 9116 210 62 45 chr1_random 2309834 2310939 -2010607 + MER31A-int LTR ERV1 2367 3452 -1484 2534 67 0 0 chr1_random 2310939 2311239 -2010307 + AluSg SINE Alu 1 300 -10 9116 210 62 45 chr1_random 2311239 2312710 -2008836 + MER31A-int LTR ERV1 3452 4917 -19 577 98 61 0 chr1_random 2312710 2312792 -2008754 + MER31A LTR ERV1 8 94 -391 392 112 39 45 chr1_random 2312818 2312996 -2008550 + (TTATA)n Simple_repeat Simple_repeat 3 179 0 1381 138 103 4 chr1_random 2313198 2313570 -2007976 + MER31A LTR ERV1 1 485 0 24 0 0 0 chr1_random 2314088 2314112 -2007434 + AT_rich Low_complexity Low_complexity 1 24 0 313 305 78 43 chr1_random 2314957 2315098 -2006448 - L1ME3A LINE L1 -219 5951 5806 923 213 33 0 chr1_random 2315143 2315326 -2006220 + MER63A DNA MER1_type 21 209 -1 436 292 42 7 chr1_random 2315333 2315477 -2006069 - L1ME3A LINE L1 -367 5803 5655 25 0 0 0 chr1_random 2315524 2315549 -2005997 + AT_rich Low_complexity Low_complexity 1 25 0 340 194 46 65 chr1_random 2315740 2315848 -2005698 + LTR52 LTR ERVL 1 106 -315 308 339 57 15 chr1_random 2315914 2316166 -2005380 + MLT1I LTR MaLR 82 344 -65 21 57 0 0 chr1_random 2316385 2316420 -2005126 + AT_rich Low_complexity Low_complexity 1 35 0 1027 295 100 22 chr1_random 2316521 2316649 -2004897 - L1MEd LINE L1 -1808 4321 4204 732 227 147 67 chr1_random 2316649 2316878 -2004668 + LTR52 LTR ERVL 1 275 -146 1904 163 14 0 chr1_random 2316878 2317173 -2004373 + AluJb SINE Alu 1 299 -13 732 227 147 67 chr1_random 2317173 2317330 -2004216 + LTR52 LTR ERVL 275 418 -3 1027 295 100 22 chr1_random 2317330 2317930 -2003616 - L1MEd LINE L1 -1925 4204 3536 189 0 0 0 chr1_random 2317980 2318001 -2003545 + (TG)n Simple_repeat Simple_repeat 2 22 0 2004 143 0 0 chr1_random 2318001 2318288 -2003258 - AluSx SINE Alu -25 287 1 498 305 52 37 chr1_random 2318336 2318431 -2003115 - L1MEd LINE L1 -2848 3281 3189 2498 127 94 8 chr1_random 2318431 2318825 -2002721 - MSTA LTR MaLR 0 428 1 498 305 52 37 chr1_random 2318825 2319001 -2002545 - L1MEd LINE L1 -2940 3189 3006 255 266 190 24 chr1_random 2319020 2319190 -2002356 - L1MEd LINE L1 -3163 2966 2826 1589 115 0 9 chr1_random 2319190 2319408 -2002138 + AluSx SINE Alu 1 216 -96 255 266 190 24 chr1_random 2319408 2319695 -2001851 - L1MEd LINE L1 -3303 2826 2433 2872 163 22 16 chr1_random 2319724 2319829 -2001717 - MER44D DNA MER2_type -1889 698 595 2497 113 34 3 chr1_random 2319829 2320182 -2001364 - THE1B LTR MaLR 0 364 1 2872 163 22 16 chr1_random 2320182 2320568 -2000978 - MER44D DNA MER2_type -1992 595 204 576 341 48 9 chr1_random 2320566 2320795 -2000751 - MLT1I LTR MaLR -79 330 93 * 183 378 10 10 chr1_random 2322680 2322778 -1998768 - MIR SINE MIR -164 98 1 2484 63 0 3 chr1_random 2323064 2323363 -1998183 - AluY SINE Alu -13 298 1 611 296 72 31 chr1_random 2323432 2323723 -1997823 + MLT1J LTR MaLR 6 308 -203 372 200 188 62 chr1_random 2323813 2323920 -1997626 + MLT1J LTR MaLR 326 461 -50 2328 136 115 18 chr1_random 2323920 2324237 -1997309 + MSTA LTR MaLR 1 364 -64 1883 138 9 59 chr1_random 2324237 2324557 -1996989 - AluSq SINE Alu -9 304 1 2328 136 115 18 chr1_random 2324557 2324629 -1996917 + MSTA LTR MaLR 364 428 0 372 200 188 62 chr1_random 2324629 2324681 -1996865 + MLT1J LTR MaLR 461 505 -6 3376 214 25 30 chr1_random 2324819 2325549 -1995997 - MER21B LTR ERV1 -11 852 127 1198 49 0 0 chr1_random 2325839 2325983 -1995563 - AluY SINE Alu 0 311 168 1881 274 73 17 chr1_random 2325992 2327179 -1994367 - L1ME3A LINE L1 -202 5968 4663 481 292 47 34 chr1_random 2327268 2327951 -1993595 - L1MEd LINE L1 -3669 2460 1820 339 265 64 111 chr1_random 2328041 2328848 -1992698 - L1MEd LINE L1 -4620 1509 740 2104 221 143 74 chr1_random 2329240 2329974 -1991572 + MER21B LTR ERV1 27 811 -52 528 303 42 6 chr1_random 2330765 2330930 -1990616 - MIR SINE MIR -9 253 83 21 0 0 0 chr1_random 2332038 2332059 -1989487 + AT_rich Low_complexity Low_complexity 1 21 0 2067 114 55 170 chr1_random 2332091 2332161 -1989385 - Tigger2a DNA MER2_type -2274 434 358 1526 160 91 14 chr1_random 2332161 2332436 -1989110 - AluJo SINE Alu -16 296 1 2067 114 55 170 chr1_random 2332436 2332655 -1988891 - Tigger2a DNA MER2_type -2350 358 218 1601 12 6 0 chr1_random 2332655 2332854 -1988692 + L1PA4 LINE L1 5974 6173 0 2067 114 55 170 chr1_random 2332854 2333049 -1988497 - Tigger2a DNA MER2_type -2490 218 2 208 38 38 57 chr1_random 2333049 2333102 -1988444 + (TA)n Simple_repeat Simple_repeat 2 53 0 5444 141 27 11 chr1_random 2333129 2333445 -1988101 - L1PA16 LINE L1 -20 6146 5836 2238 120 3 0 chr1_random 2333445 2333753 -1987793 - AluSp SINE Alu -4 309 1 5444 141 27 11 chr1_random 2333753 2334499 -1987047 - L1PA16 LINE L1 -330 5836 5070 282 308 162 3 chr1_random 2334670 2334978 -1986568 + LTR16A LTR ERVL 1 357 -93 201 74 0 0 chr1_random 2335411 2335438 -1986108 + (CAT)n Simple_repeat Simple_repeat 3 29 0 270 56 0 0 chr1_random 2335486 2335522 -1986024 + (TG)n Simple_repeat Simple_repeat 2 37 0 295 151 0 19 chr1_random 2335561 2335614 -1985932 - MLT1B LTR MaLR -2 388 337 284 98 0 98 chr1_random 2335614 2335665 -1985881 - MER75 DNA T2_type 0 514 469 225 208 94 19 chr1_random 2335640 2335693 -1985853 - MER75 DNA T2_type -457 57 1 * 982 200 80 43 chr1_random 2335693 2336005 -1985541 - MLT1B LTR MaLR -52 415 15 23 0 0 0 chr1_random 2337358 2337381 -1984165 + AT_rich Low_complexity Low_complexity 1 23 0 1762 153 11 4 chr1_random 2337453 2337728 -1983818 + AluJo SINE Alu 13 289 -23 414 132 0 0 chr1_random 2338097 2338173 -1983373 + (GA)n Simple_repeat Simple_repeat 1 76 0 478 272 88 19 chr1_random 2338264 2338452 -1983094 - MER77 LTR ERV1 -6 599 423 1337 137 27 18 chr1_random 2338452 2338671 -1982875 + THE1B LTR MaLR 1 221 -143 573 78 0 26 chr1_random 2338671 2338748 -1982798 + THE1B LTR MaLR 147 221 -143 1665 100 0 9 chr1_random 2338748 2338968 -1982578 + THE1B LTR MaLR 147 364 0 928 265 95 22 chr1_random 2338970 2339329 -1982217 - MER77 LTR ERV1 -180 425 41 271 278 0 0 chr1_random 2339414 2339468 -1982078 + MER77 LTR ERV1 543 596 -9 942 179 46 86 chr1_random 2340351 2340631 -1980915 - MER34C LTR ERV1 0 585 317 189 0 0 0 chr1_random 2340847 2340868 -1980678 + (TC)n Simple_repeat Simple_repeat 1 21 0 2193 84 44 0 chr1_random 2340871 2341168 -1980378 - AluSx SINE Alu -2 310 1 358 293 21 24 chr1_random 2341171 2341381 -1980165 - L1MC4a LINE L1 -308 5813 5732 349 271 42 24 chr1_random 2341447 2341613 -1979933 + MER113 DNA MER1_type? 126 294 -227 232 298 8 99 chr1_random 2341707 2341828 -1979718 + MIR SINE MIR 41 150 -112 279 224 0 0 chr1_random 2341830 2341879 -1979667 + AluSp SINE Alu 136 184 -119 1686 97 4 9 chr1_random 2342035 2342261 -1979285 - AluSq SINE Alu -27 286 62 305 56 0 0 chr1_random 2342261 2342297 -1979249 + Alu SINE Alu 15 50 -252 715 293 186 23 chr1_random 2342752 2343354 -1978192 + L2 LINE L2 2576 3294 -19 257 329 30 18 chr1_random 2343438 2343605 -1977941 - L1ME LINE L1 -324 5838 5670 1675 183 7 0 chr1_random 2343759 2344068 -1977478 + AluJb SINE Alu 1 311 0 288 348 56 17 chr1_random 2345340 2345518 -1976028 + MIR SINE MIR 29 213 -49 2900 110 22 10 chr1_random 2345557 2345974 -1975572 - MSTA LTR MaLR -6 422 1 460 314 71 14 chr1_random 2346417 2346627 -1974919 + MIR SINE MIR 32 253 -9 573 231 118 35 chr1_random 2347354 2347583 -1973963 + MIR SINE MIR 15 262 0 1495 169 89 75 chr1_random 2347635 2347996 -1973550 - MLT1B LTR MaLR -4 386 21 238 78 20 20 chr1_random 2349342 2349393 -1972153 + (TTTG)n Simple_repeat Simple_repeat 2 52 0 279 316 0 0 chr1_random 2351646 2351786 -1969760 + (CA)n Simple_repeat Simple_repeat 1 140 0 276 30 0 0 chr1_random 2351794 2351827 -1969719 + (TCCA)n Simple_repeat Simple_repeat 2 34 0 201 132 0 0 chr1_random 2351837 2351875 -1969671 + (CA)n Simple_repeat Simple_repeat 2 39 0 202 343 0 0 chr1_random 2351911 2351984 -1969562 + (CA)n Simple_repeat Simple_repeat 2 74 0 345 24 0 0 chr1_random 2352015 2352057 -1969489 + (CA)n Simple_repeat Simple_repeat 2 43 0 262 313 0 0 chr1_random 2352095 2352194 -1969352 + (CA)n Simple_repeat Simple_repeat 2 100 0 222 176 0 0 chr1_random 2352203 2352254 -1969292 + (TCCA)n Simple_repeat Simple_repeat 3 53 0 215 219 0 0 chr1_random 2352289 2352330 -1969216 + (TCCA)n Simple_repeat Simple_repeat 1 41 0 222 116 0 0 chr1_random 2352384 2352427 -1969119 + (CA)n Simple_repeat Simple_repeat 2 44 0 426 165 0 0 chr1_random 2352428 2352507 -1969039 + (TCCA)n Simple_repeat Simple_repeat 3 81 0 402 79 0 0 chr1_random 2352518 2352581 -1968965 + (CA)n Simple_repeat Simple_repeat 2 64 0 3756 112 13 13 chr1_random 2353950 2354475 -1967071 + MER1A DNA MER1_type 2 526 -1 398 348 48 10 chr1_random 2354634 2354841 -1966705 - MIR SINE MIR -14 248 34 1245 299 101 48 chr1_random 2355245 2356090 -1965456 - L2 LINE L2 -1 3312 2387 2264 125 39 25 chr1_random 2356090 2356449 -1965097 + THE1B LTR MaLR 1 364 0 1245 299 101 48 chr1_random 2356449 2356669 -1964877 - L2 LINE L2 -926 2387 2180 1420 225 131 69 chr1_random 2356672 2357197 -1964349 + MLT1E LTR MaLR 2 651 -3 1823 151 0 7 chr1_random 2357249 2357556 -1963990 + AluJo SINE Alu 3 307 0 316 305 12 0 chr1_random 2358266 2358348 -1963198 - L2 LINE L2 -1 3271 3189 518 127 25 0 chr1_random 2358560 2358639 -1962907 + FRAM SINE Alu 41 121 -55 396 298 0 8 chr1_random 2359102 2359223 -1962323 - L2 LINE L2 -9 3304 3185 802 182 11 11 chr1_random 2361663 2361850 -1959696 + MER53 DNA DNA 3 189 0 2262 110 38 41 chr1_random 2362298 2362663 -1958883 + THE1B LTR MaLR 1 364 0 5337 223 59 35 chr1_random 2363180 2363247 -1958299 - L1MD1 LINE L1 0 6242 6178 2040 125 0 3 chr1_random 2363247 2363550 -1957996 + AluSx SINE Alu 1 302 -10 5337 223 59 35 chr1_random 2363550 2364164 -1957382 - L1MD1 LINE L1 -64 6178 5580 2032 113 0 3 chr1_random 2364164 2364607 -1956939 + AluSq SINE Alu 1 442 0 5337 223 59 35 chr1_random 2364607 2365274 -1956272 - L1MD1 LINE L1 -662 5580 4930 2162 171 38 53 chr1_random 2365274 2365748 -1955798 - MLT1C LTR MaLR 0 467 1 5337 223 59 35 chr1_random 2365748 2367067 -1954479 - L1MD1 LINE L1 -1312 4930 3510 558 288 121 77 chr1_random 2367167 2367870 -1953676 + L1M4c LINE L1 974 1922 -821 300 296 96 45 chr1_random 2367924 2368238 -1953308 + L1ME LINE L1 5488 5817 -353 422 271 49 53 chr1_random 2369352 2369768 -1951778 + L1ME3A LINE L1 5078 5491 -679 396 277 120 11 chr1_random 2369870 2370054 -1951492 + L1ME3A LINE L1 5741 5944 -226 300 327 124 53 chr1_random 2370290 2370745 -1950801 - L2 LINE L2 -640 2674 2160 183 42 0 0 chr1_random 2370745 2370769 -1950777 + (GA)n Simple_repeat Simple_repeat 1 24 0 300 327 124 53 chr1_random 2370769 2370940 -1950606 - L2 LINE L2 -1154 2160 2003 827 242 92 81 chr1_random 2371040 2371486 -1950060 - MER39 LTR ERV1 0 707 257 259 315 22 33 chr1_random 2371628 2371720 -1949826 + L2 LINE L2 3223 3313 0 180 219 0 0 chr1_random 2372604 2372645 -1948901 + MIR SINE MIR 170 210 -52 390 42 0 0 chr1_random 2372901 2372949 -1948597 + (CA)n Simple_repeat Simple_repeat 1 48 0 365 274 73 24 chr1_random 2372955 2373079 -1948467 - MIR SINE MIR -93 169 40 21 0 0 0 chr1_random 2373517 2373538 -1948008 + AT_rich Low_complexity Low_complexity 1 21 0 2203 92 3 0 chr1_random 2374548 2374843 -1946703 + AluSp SINE Alu 1 296 -17 878 205 80 53 chr1_random 2376617 2376947 -1944599 + MER31B LTR ERV1 7 514 0 2689 113 0 0 chr1_random 2378538 2378902 -1942644 + THE1B LTR MaLR 1 364 0 192 224 0 69 chr1_random 2380235 2380293 -1941253 + L2 LINE L2 1918 1971 -1343 221 300 168 45 chr1_random 2380350 2380660 -1940886 + L2 LINE L2 2533 2880 -434 353 296 16 92 chr1_random 2380753 2381003 -1940543 + L2 LINE L2 3082 3312 -1 238 259 94 24 chr1_random 2381008 2381093 -1940453 + MIR SINE MIR 172 262 0 201 243 54 27 chr1_random 2381991 2382065 -1939481 - MIR3 SINE MIR -18 190 115 184 297 135 14 chr1_random 2382617 2382691 -1938855 + MIR SINE MIR 29 111 -151 1998 220 34 52 chr1_random 2382724 2383228 -1938318 + LTR42 LTR ERVL 1 495 0 237 269 0 77 chr1_random 2383239 2383343 -1938203 - MIR SINE MIR -60 202 107 2417 53 3 3 chr1_random 2386018 2386321 -1935225 - AluY SINE Alu -6 305 3 1647 169 7 13 chr1_random 2387966 2388267 -1933279 - AluJo SINE Alu -13 299 1 379 231 62 46 chr1_random 2388935 2389065 -1932481 + MIR SINE MIR 20 151 -111 214 259 259 21 chr1_random 2389138 2389281 -1932265 + MIR SINE MIR 76 252 -10 195 227 160 80 chr1_random 2391373 2391523 -1930023 - MIR SINE MIR -17 245 84 1029 17 0 0 chr1_random 2591583 2591701 -1729845 - L1P LINE L1 -3321 2825 2708 230 200 55 0 chr1_random 2597676 2597731 -1723815 - MER58A DNA MER1_type -28 79 22 288 311 91 0 chr1_random 2597838 2597970 -1723576 + MIR SINE MIR 106 249 -13 3809 69 8 8 chr1_random 2598218 2598723 -1722823 - SVA Other Other -1 1385 881 487 159 57 0 chr1_random 2598850 2598938 -1722608 - AluJ/FLAM SINE Alu -217 95 3 296 287 0 11 chr1_random 2598940 2599027 -1722519 + MLT1I LTR MaLR 324 409 0 1318 260 169 50 chr1_random 2599027 2599869 -1721677 + L2 LINE L2 1197 2138 -1176 360 264 182 0 chr1_random 2599878 2599999 -1721547 - MIR SINE MIR -86 176 34 216 230 101 143 chr1_random 2600000 2600209 -1721337 + L2 LINE L2 3109 3308 -5 9929 55 44 3 chr1_random 2603903 2605325 -1716221 - L1P LINE L1 -1850 4296 2817 5165 64 33 5 chr1_random 2605473 2606767 -1714779 - L1PA4 LINE L1 -199 5956 4630 372 212 35 47 chr1_random 2606764 2606934 -1714612 + L1P LINE L1 2980 3147 -2999 * 9994 93 17 0 chr1_random 2607158 2608569 -1712977 + HERVK11 LTR ERVK 3167 4601 -3352 3358 91 22 1 chr1_random 2608567 2609104 -1712442 + HERVK11 LTR ERVK 5525 6126 -1827 * 28205 61 22 77 chr1_random 2609230 2609591 -1711955 - L1P LINE L1 -1148 4998 4619 18840 48 20 70 chr1_random 2609591 2612793 -1708753 + L1PA4 LINE L1 2980 6155 0 738 165 80 0 chr1_random 2612798 2613009 -1708537 - ALR/Alpha Satellite centromeric 0 227 1 28205 61 22 77 chr1_random 2613009 2616984 -1704562 - L1P LINE L1 -1531 4615 697 4158 58 17 0 chr1_random 2617084 2617668 -1703878 - L1P LINE L1 -2570 3576 2983 7115 50 8 0 chr1_random 2617668 2619182 -1702364 + L1PA4 LINE L1 4630 6151 -4 926 275 116 22 chr1_random 2619182 2619658 -1701888 - BSR/Beta Satellite Satellite 0 1957 1527 4227 178 62 56 chr1_random 2619658 2620723 -1700823 + MER11C LTR ERVK 1 1071 0 926 275 116 22 chr1_random 2620723 2620972 -1700574 - BSR/Beta Satellite Satellite -430 1527 1 525 222 17 37 chr1_random 2621040 2621208 -1700338 - BSR/Beta Satellite Satellite 0 164 1 243 167 0 0 chr1_random 2621219 2621261 -1700285 - BSR/Beta Satellite Satellite -87 55 14 204 235 107 81 chr1_random 2621424 2621573 -1699973 - MIR SINE MIR -1 261 109 205 200 0 0 chr1_random 2622887 2622927 -1698619 + (TTA)n Simple_repeat Simple_repeat 3 42 0 373 301 97 87 chr1_random 2628845 2629581 -1691965 + L1MCa LINE L1 1428 2065 -4784 217 164 18 36 chr1_random 2631131 2631186 -1690360 + A-rich Low_complexity Low_complexity 5 58 0 392 267 244 20 chr1_random 2631425 2631781 -1689765 + L1MCa LINE L1 3783 4218 -2630 231 189 14 27 chr1_random 2633100 2633228 -1688318 + (CAA)n Simple_repeat Simple_repeat 1 126 0 430 205 27 44 chr1_random 2633237 2633864 -1687682 + (CACAA)n Simple_repeat Simple_repeat 1 616 0 356 213 24 30 chr1_random 2633592 2633761 -1687785 + A-rich Low_complexity Low_complexity 5 172 0 * 206 333 6 6 chr1_random 2634996 2635155 -1686391 + A-rich Low_complexity Low_complexity 2 160 0 232 186 0 103 chr1_random 2638411 2638508 -1683038 - ALR/Alpha Satellite centromeric -79 93 7 262 297 16 39 chr1_random 2647939 2648067 -1673479 + ALR/Alpha Satellite centromeric 5 129 -43 235 122 0 184 chr1_random 2651589 2651687 -1669859 + ALR/Alpha Satellite centromeric 20 99 -73 12402 50 9 1 chr1_random 2659951 2661562 -1659984 - L1P LINE L1 -2807 3339 1716 1447 139 81 0 chr1_random 2661696 2662001 -1659545 + AluSg SINE Alu 3 328 0 1941 131 0 3 chr1_random 2662198 2662489 -1659057 + AluSg SINE Alu 2 291 -19 920 225 32 46 chr1_random 2662546 2662830 -1658716 - LTR9 LTR ERV1 0 612 333 10980 81 19 5 chr1_random 2662833 2664347 -1657199 + L1P LINE L1 2 1536 -4610 1984 253 56 23 chr1_random 2664480 2665099 -1656447 + L1M2 LINE L1 1971 2569 -4279 2234 109 6 0 chr1_random 2665099 2665410 -1656136 - AluSq SINE Alu 0 313 1 1984 253 56 23 chr1_random 2665410 2665630 -1655916 + L1M2 LINE L1 2569 2780 -4068 1748 148 50 3 chr1_random 2665630 2665928 -1655618 + AluSq SINE Alu 1 312 -1 1984 253 56 23 chr1_random 2665928 2666381 -1655165 + L1M2 LINE L1 2780 3306 -3542 891 258 28 22 chr1_random 2666400 2666545 -1655001 + L1M2 LINE L1 3474 3617 -3231 1592 184 13 16 chr1_random 2666545 2666850 -1654696 + AluSx SINE Alu 1 304 -8 891 258 28 22 chr1_random 2666850 2667104 -1654442 + L1M2 LINE L1 3617 3875 -2973 321 222 163 39 chr1_random 2667323 2667476 -1654070 - L1MC4 LINE L1 -536 7506 7335 1502 126 37 4 chr1_random 2667486 2667757 -1653789 - AluSg SINE Alu -30 280 1 1325 197 87 82 chr1_random 2667874 2668229 -1653317 - LTR18A LTR ERVL 0 357 1 361 318 169 14 chr1_random 2668354 2668502 -1653044 + MER5A DNA MER1_type 12 182 -7 576 228 36 60 chr1_random 2670029 2670279 -1651267 - L1M2 LINE L1 -794 5497 5254 617 172 7 76 chr1_random 2670292 2670345 -1651201 - L1P5 LINE L1 -425 5731 5676 2237 88 0 0 chr1_random 2670345 2670642 -1650904 - AluY SINE Alu -14 297 1 617 172 7 76 chr1_random 2670642 2670733 -1650813 - L1P5 LINE L1 -480 5676 5597 740 235 34 30 chr1_random 2670747 2671011 -1650535 - L1 LINE L1 -755 5391 5127 633 238 80 11 chr1_random 2671034 2671491 -1650055 - L1 LINE L1 -2456 3690 3074 2595 40 19 0 chr1_random 2671613 2671936 -1649610 + L1P2 LINE L1 5411 5739 -416 982 188 96 13 chr1_random 2673202 2673441 -1648105 + AluJb SINE Alu 41 299 -13 211 222 37 9 chr1_random 2673606 2673714 -1647832 + GA-rich Low_complexity Low_complexity 4 114 0 284 182 23 41 chr1_random 2673840 2674056 -1647490 + GA-rich Low_complexity Low_complexity 1 212 0 744 136 25 0 chr1_random 2674199 2674317 -1647229 - AluSg SINE Alu -188 122 2 1655 138 28 31 chr1_random 2674328 2674618 -1646928 - AluSc SINE Alu -20 289 1 12135 199 76 12 chr1_random 2675108 2677433 -1644113 + L1PBa LINE L1 136 2311 -4551 1944 120 3 0 chr1_random 2677433 2677716 -1643830 + AluSg SINE Alu 1 284 -26 12135 199 76 12 chr1_random 2677716 2679599 -1641947 + L1PBa LINE L1 2311 4756 -2106 2196 112 3 6 chr1_random 2679599 2679913 -1641633 + AluSp SINE Alu 1 313 0 12135 199 76 12 chr1_random 2679913 2681013 -1640533 + L1PBa LINE L1 4756 5784 -1078 2075 127 3 0 chr1_random 2681403 2681710 -1639836 - AluSx SINE Alu -4 308 1 815 93 0 0 chr1_random 2681710 2681817 -1639729 - AluSg SINE Alu -177 133 27 465 280 101 14 chr1_random 2682700 2682907 -1638639 - L1MC4a LINE L1 -379 7429 7205 215 236 0 0 chr1_random 2682944 2682999 -1638547 + T-rich Low_complexity Low_complexity 1 55 0 252 297 234 16 chr1_random 2683112 2683240 -1638306 + MER5A DNA MER1_type 26 181 -8 23 54 0 0 chr1_random 2684068 2684105 -1637441 + AT_rich Low_complexity Low_complexity 1 37 0 22 0 0 0 chr1_random 2684445 2684467 -1637079 + AT_rich Low_complexity Low_complexity 1 22 0 11070 31 6 0 chr1_random 2684901 2687019 -1634527 + L1PA3 LINE L1 4020 6155 0 15677 71 2 3 chr1_random 2687029 2689175 -1632371 - L1P LINE L1 -3998 2148 5 378 299 109 62 chr1_random 2689245 2689372 -1632174 - L1M4 LINE L1 -519 5891 5771 2092 118 3 16 chr1_random 2689372 2689686 -1631860 - AluSg SINE Alu 0 310 1 378 299 109 62 chr1_random 2689686 2689879 -1631667 - L1M4 LINE L1 -639 5771 5556 302 306 53 20 chr1_random 2689899 2690144 -1631402 - L1M4 LINE L1 -852 5530 5278 1674 186 0 10 chr1_random 2690164 2690460 -1631086 + AluSg SINE Alu 1 293 -17 2109 145 0 0 chr1_random 2690529 2690826 -1630720 - AluSx SINE Alu -15 297 1 1121 260 11 15 chr1_random 2690829 2691102 -1630444 - AluJb SINE Alu -17 295 24 533 293 90 42 chr1_random 2691104 2691319 -1630227 - L1M4 LINE L1 -3967 2417 2181 1843 163 89 12 chr1_random 2691319 2691657 -1629889 - THE1B LTR MaLR 0 364 1 533 293 90 42 chr1_random 2691657 2691752 -1629794 - L1M4 LINE L1 -4203 2181 2092 23 0 0 0 chr1_random 2691760 2691783 -1629763 + AT_rich Low_complexity Low_complexity 1 23 0 324 326 35 21 chr1_random 2691846 2691987 -1629559 - L1M4 LINE L1 -4522 1862 1720 1502 116 0 40 chr1_random 2691987 2692239 -1629307 - AluY SINE Alu 0 307 65 449 287 8 8 chr1_random 2692242 2692371 -1629175 - AluJo/FLAM SINE Alu -173 129 1 278 214 76 46 chr1_random 2692378 2692509 -1629037 - L1M2 LINE L1 -4253 2596 2462 312 273 16 39 chr1_random 2692522 2692650 -1628896 - L1M4 LINE L1 -5036 1348 1224 12751 49 10 6 chr1_random 2693031 2694821 -1626725 + L1PA3 LINE L1 1370 3166 -2980 4831 63 32 1 chr1_random 2694815 2695971 -1625575 + L1PA3 LINE L1 4718 5932 -223 * 1188 131 20 2 chr1_random 2696100 2698503 -1623043 - ALR/Alpha Satellite centromeric 0 5299 2940 2717 20 0 0 chr1_random 2698503 2698803 -1622743 + AluYa5 SINE Alu 1 300 -11 1188 131 20 2 chr1_random 2698803 2701308 -1620238 - ALR/Alpha Satellite centromeric -2359 2940 1 1127 142 22 1 chr1_random 2701322 2702085 -1619461 - ALR/Alpha Satellite centromeric 0 5822 5076 2726 20 0 0 chr1_random 2702085 2702386 -1619160 + AluYa5 SINE Alu 1 301 -10 1127 142 22 1 chr1_random 2702386 2707029 -1614517 - ALR/Alpha Satellite centromeric -746 5076 1 1188 136 12 2 chr1_random 2707185 2707583 -1613963 - ALR/Alpha Satellite centromeric 0 11030 10637 2700 23 0 0 chr1_random 2707583 2707883 -1613663 + AluYa5 SINE Alu 1 300 -11 1188 136 12 2 chr1_random 2707883 2712478 -1609068 - ALR/Alpha Satellite centromeric -393 10637 6089 2700 23 0 0 chr1_random 2712478 2712778 -1608768 + AluYa5 SINE Alu 1 300 -11 1188 136 12 2 chr1_random 2712778 2718107 -1603439 - ALR/Alpha Satellite centromeric -4941 6089 1 19996 70 0 3 chr1_random 2718207 2720928 -1600618 - L1P LINE L1 -3430 2716 2 803 225 32 46 chr1_random 2720931 2721215 -1600331 + LTR9 LTR ERV1 333 612 0 2050 131 0 3 chr1_random 2721272 2721563 -1599983 - AluSg SINE Alu -19 291 2 367 296 74 77 chr1_random 2721600 2721760 -1599786 - L1ME LINE L1 -569 5593 5434 1761 144 61 0 chr1_random 2721760 2722074 -1599472 - AluSg SINE Alu 0 332 3 367 296 74 77 chr1_random 2722074 2722232 -1599314 - L1ME LINE L1 -728 5434 5270 2248 81 30 7 chr1_random 2723587 2723885 -1597661 - AluY SINE Alu -6 305 1 274 297 212 24 chr1_random 2724794 2725006 -1596540 + MIR SINE MIR 3 254 -8 1992 130 22 3 chr1_random 2725517 2725833 -1595713 - MER9 LTR ERVK 0 511 190 1954 140 39 0 chr1_random 2726338 2726623 -1594923 + AluSx SINE Alu 1 296 -16 209 286 124 38 chr1_random 2726772 2726877 -1594669 - MIR SINE MIR -65 143 30 2120 119 17 3 chr1_random 2727443 2727745 -1593801 + AluSq SINE Alu 1 306 -7 883 116 8 0 chr1_random 2727925 2728046 -1593500 - AluSp SINE Alu -191 122 1 725 168 0 42 chr1_random 2728217 2728360 -1593186 - FLAM_C SINE Alu 0 143 7 1956 134 10 10 chr1_random 2728619 2728909 -1592637 + AluSq SINE Alu 5 294 -19 1328 109 0 0 chr1_random 2730726 2730919 -1590627 - MER9 LTR ERVK -318 193 1 187 333 30 15 chr1_random 2732679 2732745 -1588801 + L3 LINE CR1 1413 1479 -98 192 261 15 46 chr1_random 2733535 2733600 -1587946 + L2 LINE L2 2994 3056 -216 1889 112 140 25 chr1_random 2733649 2734006 -1587540 - LTR14B LTR ERVK 0 608 211 231 67 67 44 chr1_random 2733994 2734039 -1587507 - LTR14B LTR ERVK -562 46 1 * 4634 65 180 95 chr1_random 2734044 2734177 -1587369 - HERVK14 LTR ERVK -3 5942 5822 319 179 0 18 chr1_random 2734177 2734233 -1587313 - MER41C LTR ERV1 -493 61 7 4634 65 180 95 chr1_random 2734233 2734878 -1586668 - HERVK14 LTR ERVK -123 5822 5038 367 41 0 0 chr1_random 2734878 2734927 -1586619 - HERV17 LTR ERV1 -8145 481 433 * 9689 81 33 15 chr1_random 2734926 2736353 -1585193 - HERV17 LTR ERV1 -3073 5553 2430 8266 103 26 6 chr1_random 2736336 2737505 -1584041 - HERV17 LTR ERV1 -6610 2016 824 * 5844 73 17 8 chr1_random 2737543 2738319 -1583227 - HERVK14 LTR ERVK -5162 783 1 1830 86 23 154 chr1_random 2738319 2738715 -1582831 - LTR14B LTR ERVK 0 608 1 2120 102 0 36 chr1_random 2739343 2739647 -1581899 - AluSq SINE Alu -17 296 4 361 263 0 0 chr1_random 2740097 2740173 -1581373 - MER20 DNA MER1_type -60 159 84 183 161 0 0 chr1_random 2740289 2740320 -1581226 - MIR SINE MIR -73 189 159 3066 163 66 10 chr1_random 2740951 2741448 -1580098 - MER1A DNA MER1_type 0 527 3 1696 160 4 0 chr1_random 2741483 2741733 -1579813 - AluSx SINE Alu -61 251 1 227 239 14 84 chr1_random 2741754 2741825 -1579721 + L2 LINE L2 3197 3262 -10 2266 64 13 24 chr1_random 2742228 2742526 -1579020 - AluY SINE Alu -16 295 1 3523 51 2 0 chr1_random 2743214 2743626 -1577920 - L1PA4 LINE L1 -3 6152 5740 5978 44 2 0 chr1_random 2743626 2744700 -1576846 + L1PA4 LINE L1 4665 5739 -416 1132 193 83 9 chr1_random 2745977 2746236 -1575310 + AluJb SINE Alu 41 316 0 424 205 29 38 chr1_random 2746390 2747147 -1574399 + GA-rich Low_complexity Low_complexity 1 750 0 219 114 0 68 chr1_random 2747152 2747196 -1574350 + (GGAGA)n Simple_repeat Simple_repeat 4 44 0 669 154 30 29 chr1_random 2747198 2747915 -1573631 + GA-rich Low_complexity Low_complexity 1 717 0 362 128 21 75 chr1_random 2748007 2748194 -1573352 + GA-rich Low_complexity Low_complexity 2 178 0 677 146 39 35 chr1_random 2748254 2748781 -1572765 + GA-rich Low_complexity Low_complexity 1 529 0 601 251 41 38 chr1_random 2748938 2749363 -1572183 + BSR/Beta Satellite Satellite 1 426 -46 700 221 6 42 chr1_random 2749398 2750294 -1571252 + BSR/Beta Satellite Satellite 1 863 -46 274 245 57 28 chr1_random 2750317 2750423 -1571123 + BSR/Beta Satellite Satellite 14 122 -30 1796 259 11 30 chr1_random 2750533 2750728 -1570818 + BSR/Beta Satellite Satellite 1 198 -1613 1977 140 83 23 chr1_random 2750728 2751078 -1570468 + THE1C LTR MaLR 5 375 0 1796 259 11 30 chr1_random 2751078 2752376 -1569170 + BSR/Beta Satellite Satellite 198 1808 -3 740 227 5 22 chr1_random 2752433 2753229 -1568317 + BSR/Beta Satellite Satellite 1 782 0 1231 257 20 37 chr1_random 2753243 2753522 -1568024 + BSR/Beta Satellite Satellite 1 283 -3711 2193 138 0 0 chr1_random 2753522 2753834 -1567712 - AluSx SINE Alu 0 312 1 1231 257 20 37 chr1_random 2753834 2757264 -1564282 + BSR/Beta Satellite Satellite 283 3951 -43 330 357 22 7 chr1_random 2757370 2757586 -1563960 + BSR/Beta Satellite Satellite 1 219 -1 550 246 11 24 chr1_random 2757635 2758179 -1563367 + BSR/Beta Satellite Satellite 1 537 -30 1279 252 42 36 chr1_random 2758269 2760642 -1560904 + BSR/Beta Satellite Satellite 1 2388 -61 205 200 0 0 chr1_random 2761266 2761306 -1560240 + (TAA)n Simple_repeat Simple_repeat 3 42 0 186 225 113 84 chr1_random 2762620 2762762 -1558784 + MIR SINE MIR 109 254 -8 236 167 0 0 chr1_random 2762932 2762974 -1558572 + BSR/Beta Satellite Satellite 14 55 -87 513 222 17 37 chr1_random 2762985 2763153 -1558393 + BSR/Beta Satellite Satellite 1 164 -30 935 276 94 26 chr1_random 2763221 2763470 -1558076 + BSR/Beta Satellite Satellite 1 232 -1852 4564 179 62 56 chr1_random 2763470 2764535 -1557011 - MER11C LTR ERVK 0 1071 1 935 276 94 26 chr1_random 2764535 2765011 -1556535 + BSR/Beta Satellite Satellite 232 1910 -174 20190 47 7 0 chr1_random 2765011 2768164 -1553382 - L1PA4 LINE L1 -4 6151 2980 7340 64 3 3 chr1_random 2768161 2769687 -1551859 + L1PA4 LINE L1 4630 6155 0 * 851 172 62 0 chr1_random 2769692 2769978 -1551568 - ALR/Alpha Satellite centromeric 0 303 1 * 1704 128 0 0 chr1_random 2769977 2770220 -1551326 + MER11D LTR ERVK 1 243 -654 1208 144 7 2 chr1_random 2770215 2773488 -1548058 - ALR/Alpha Satellite centromeric -3 3287 1 * 1256 141 3 2 chr1_random 2773503 2773948 -1547598 - ALR/Alpha Satellite centromeric 0 3465 3022 6485 42 1 4 chr1_random 2773948 2774693 -1546853 + L1PA4 LINE L1 5413 6155 0 1256 141 3 2 chr1_random 2774693 2776966 -1544580 - ALR/Alpha Satellite centromeric -443 3022 1 1240 142 5 2 chr1_random 2777002 2795668 -1525878 - ALR/Alpha Satellite centromeric 0 18719 1 2295 90 10 3 chr1_random 2795682 2795981 -1525565 - AluY SINE Alu -10 301 1 1206 143 2 0 chr1_random 2795984 2798874 -1522672 - ALR/Alpha Satellite centromeric 0 2896 1 548 117 0 0 chr1_random 2798880 2798957 -1522589 + L1PA4 LINE L1 7 83 -6063 37886 61 2 1 chr1_random 2798957 2804613 -1516933 + L1PA4 LINE L1 489 6152 -3 1235 158 5 5 chr1_random 2804620 2809894 -1511652 - ALR/Alpha Satellite centromeric 0 5274 1 5355 117 88 10 chr1_random 2809905 2810817 -1510729 + MER11B LTR ERVK 2 1150 -116 2925 139 33 28 chr1_random 2810866 2811785 -1509761 + HERVK11 LTR ERVK 1 976 -6977 2834 107 37 0 chr1_random 2811783 2812363 -1509183 + HERVK11 LTR ERVK 1165 2700 -5253 * 12355 92 5 0 chr1_random 2812355 2814037 -1507509 + HERVK11 LTR ERVK 2912 4601 -3352 8519 85 9 0 chr1_random 2814035 2815214 -1506332 + HERVK11 LTR ERVK 5525 6767 -1186 * 3602 106 35 0 chr1_random 2815199 2815718 -1505828 + HERVK11 LTR ERVK 6957 7493 -460 * 3853 34 8 0 chr1_random 2815719 2816192 -1505354 - L1PA3 LINE L1 -1331 4815 4339 7308 47 1 0 chr1_random 2816192 2817514 -1504032 + L1PA3 LINE L1 4828 6150 -5 3356 99 7 0 chr1_random 2817530 2817995 -1503551 + HERVK11 LTR ERVK 7486 7953 0 5459 160 34 21 chr1_random 2817995 2819052 -1502494 + MER11C LTR ERVK 1 1071 0 1103 169 7 4 chr1_random 2819053 2824958 -1496588 - ALR/Alpha Satellite centromeric 0 11984 6098 414 0 0 0 chr1_random 2824958 2825004 -1496542 + (TA)n Simple_repeat Simple_repeat 2 47 0 1103 169 7 4 chr1_random 2825004 2831002 -1490544 - ALR/Alpha Satellite centromeric -5886 6098 1 5797 48 1 6 chr1_random 2831002 2831725 -1489821 - L1PA4 LINE L1 0 6155 5436 30775 80 5 0 chr1_random 2831725 2835866 -1485680 - L1PA4 LINE L1 -1987 4159 1 1057 180 7 2 chr1_random 2835866 2837464 -1484082 - ALR/Alpha Satellite centromeric 0 1605 1 5744 153 30 17 chr1_random 2837474 2838531 -1483015 + MER11C LTR ERVK 1 1071 0 1956 165 0 6 chr1_random 2838531 2838853 -1482693 + HERVK11 LTR ERVK 1 320 -7633 1541 101 23 5 chr1_random 2838850 2839069 -1482477 + HERVK11 LTR ERVK 207 429 -7524 * 5489 76 11 0 chr1_random 2839061 2839788 -1481758 + HERVK11 LTR ERVK 7217 7951 -2 5252 145 103 14 chr1_random 2839790 2840774 -1480772 + MER11C LTR ERVK 1 1071 0 1072 164 6 3 chr1_random 2840780 2841578 -1479968 - ALR/Alpha Satellite centromeric -3 800 1 937 189 4 1 chr1_random 2841619 2842178 -1479368 - ALR/Alpha Satellite centromeric -1 560 1 1052 159 14 3 chr1_random 2842193 2844582 -1476964 - ALR/Alpha Satellite centromeric -1 2414 1 * 5653 151 44 16 chr1_random 2844576 2845605 -1475941 + MER11C LTR ERVK 1 1057 -14 1056 167 16 5 chr1_random 2845624 2847117 -1474429 - ALR/Alpha Satellite centromeric 0 1509 1 6398 83 17 0 chr1_random 2847118 2848509 -1473037 + L1PA4 LINE L1 4744 6152 -3 367 169 0 14 chr1_random 2848515 2848586 -1472960 - ALR/Alpha Satellite centromeric -10 162 93 6906 39 0 3 chr1_random 2848595 2849998 -1471548 - L1PA3 LINE L1 -3 6152 4718 23840 68 6 3 chr1_random 2849998 2853140 -1468406 - L1PA3 LINE L1 -2986 3160 9 1135 144 6 2 chr1_random 2853143 2855149 -1466397 + ALR/Alpha Satellite centromeric 1 2012 -1 1157 148 5 1 chr1_random 2855160 2861784 -1459762 + ALR/Alpha Satellite centromeric 1 6647 -42 1117 160 7 12 chr1_random 2861810 2864194 -1457352 + ALR/Alpha Satellite centromeric 1 2373 -60 1206 149 9 0 chr1_random 2864327 2866889 -1454657 + ALR/Alpha Satellite centromeric 1 2585 0 2267 94 10 3 chr1_random 2866892 2867191 -1454355 + AluY SINE Alu 1 301 -10 1261 136 11 4 chr1_random 2867205 2875179 -1446367 + ALR/Alpha Satellite centromeric 1 8027 -41 18164 123 13 0 chr1_random 2875183 2877785 -1443761 + HERVK11 LTR ERVK 154 2788 -5165 29 0 0 0 chr1_random 2878106 2878135 -1443411 + AT_rich Low_complexity Low_complexity 1 29 0 2128 103 14 0 chr1_random 2878135 2878416 -1443130 - AluSg SINE Alu -25 285 1 2073 130 10 0 chr1_random 2878418 2878710 -1442836 - AluSx SINE Alu -17 295 1 926 234 19 5 chr1_random 2878720 2878925 -1442621 - MIR SINE MIR -13 249 42 362 61 0 0 chr1_random 2879025 2879074 -1442472 - Alu SINE Alu -246 54 6 1020 140 34 34 chr1_random 2879097 2879276 -1442270 + AluJo SINE Alu 1 179 -133 815 201 22 16 chr1_random 2879581 2879765 -1441781 + MER20 DNA MER1_type 1 185 -34 2274 96 0 13 chr1_random 2879770 2880071 -1441475 + AluSq SINE Alu 3 299 -14 202 231 0 15 chr1_random 2880972 2881037 -1440509 + (TA)n Simple_repeat Simple_repeat 2 65 0 226 258 38 13 chr1_random 2881821 2881901 -1439645 - AluJ/monomer SINE Alu -245 56 2 292 239 77 43 chr1_random 2883546 2883663 -1437883 + L1ME LINE L1 5504 5624 -497 29 28 0 0 chr1_random 2883780 2883816 -1437730 + AT_rich Low_complexity Low_complexity 1 36 0 915 262 75 43 chr1_random 2883826 2884200 -1437346 - L2 LINE L2 0 3313 2928 2110 208 17 17 chr1_random 2884478 2885111 -1436435 - L1MC/D LINE L1 -642 5691 5057 649 287 64 64 chr1_random 2885968 2886512 -1435034 + L1PA14 LINE L1 5289 5832 -329 * 2114 230 83 10 chr1_random 2886087 2886686 -1434860 + L1ME2 LINE L1 5391 6033 -131 302 312 21 28 chr1_random 2886949 2887090 -1434456 - L1MC/D LINE L1 -2301 3845 3706 30 69 0 0 chr1_random 2887262 2887320 -1434226 + AT_rich Low_complexity Low_complexity 1 58 0 24 32 0 0 chr1_random 2887976 2888007 -1433539 + GC_rich Low_complexity Low_complexity 1 31 0 206 105 26 0 chr1_random 2888301 2888339 -1433207 + (TA)n Simple_repeat Simple_repeat 2 40 0 3077 160 9 15 chr1_random 2888759 2889283 -1432263 - Tigger3(Golem) DNA MER2_type 0 3029 2509 2074 132 25 3 chr1_random 2889283 2889609 -1431937 - L1PA7 LINE L1 -5 6149 5817 783 231 12 0 chr1_random 2890500 2890660 -1430886 - MLT1E2 LTR MaLR 0 626 465 1331 130 9 9 chr1_random 2890662 2890917 -1430629 + L1M2 LINE L1 5219 5473 -743 2017 103 4 7 chr1_random 2890929 2891210 -1430336 + AluSq SINE Alu 1 280 -33 234 116 0 0 chr1_random 2891214 2891257 -1430289 + (TTAA)n Simple_repeat Simple_repeat 1 43 0 286 214 40 113 chr1_random 2891574 2891691 -1429855 + MER5B DNA MER1_type 66 161 -17 2258 112 7 0 chr1_random 2891694 2891999 -1429547 + AluSx SINE Alu 1 307 -5 222 278 0 42 chr1_random 2892515 2892587 -1428959 + GA-rich Low_complexity Low_complexity 4 72 0 414 113 42 0 chr1_random 2894001 2894072 -1427474 - L1MA3 LINE L1 0 6305 6232 960 245 86 8 chr1_random 2894325 2894696 -1426850 - L1M4 LINE L1 -886 6071 5672 991 183 0 6 chr1_random 2894696 2894871 -1426675 + AluJb SINE Alu 122 295 -17 1061 259 31 13 chr1_random 2894896 2895325 -1426221 - L1MEc LINE L1 -3668 3289 2897 5000 85 15 0 chr1_random 2895612 2896271 -1425275 - L1PA4 LINE L1 -74 6081 5413 201 268 40 101 chr1_random 2896312 2896496 -1425050 - L2 LINE L2 -919 2395 2222 3227 173 72 7 chr1_random 2896496 2897064 -1424482 - MER6A DNA MER2_type 0 605 1 201 268 40 101 chr1_random 2897064 2897077 -1424469 - L2 LINE L2 -1092 2222 2210 416 125 0 62 chr1_random 2897184 2897296 -1424250 - MER96B DNA MER1_type? -234 183 79 354 164 20 13 chr1_random 2897291 2897362 -1424184 - AluJ/FLAM SINE Alu -245 57 2 * 353 357 80 30 chr1_random 2897732 2898096 -1423450 - HERV16 LTR ERVL -1907 3089 2708 746 174 7 43 chr1_random 2898151 2898289 -1423257 + FLAM_C SINE Alu 1 133 0 344 290 65 0 chr1_random 2898425 2898532 -1423014 - L1MEc LINE L1 -6543 316 203 397 289 35 35 chr1_random 2899308 2899481 -1422065 + MER20B DNA MER1_type 2 174 -609 189 0 0 0 chr1_random 2899615 2899636 -1421910 + (TG)n Simple_repeat Simple_repeat 2 22 0 * 441 0 0 0 chr1_random 2899635 2899684 -1421862 + (TA)n Simple_repeat Simple_repeat 2 50 0 256 204 0 0 chr1_random 2900301 2900355 -1421191 + FAM SINE Alu 125 178 -1 765 283 107 4 chr1_random 2901883 2902155 -1419391 - L1MC4a LINE L1 -1933 5875 5576 1718 130 4 8 chr1_random 2902649 2902903 -1418643 - AluSx SINE Alu -59 253 1 2254 96 7 0 chr1_random 2903149 2903442 -1418104 - AluSx SINE Alu -17 295 1 974 168 12 6 chr1_random 2903444 2903605 -1417941 - FRAM SINE Alu -4 162 1 465 19 0 0 chr1_random 2904254 2904308 -1417238 + (CA)n Simple_repeat Simple_repeat 2 55 0 416 275 191 8 chr1_random 2904367 2904498 -1417048 + MER91A DNA MER1_type 4 158 -38 2882 196 21 19 chr1_random 2905146 2906166 -1415380 - L1 LINE L1 -3325 4240 3217 341 121 143 33 chr1_random 2906460 2906551 -1414995 + AluJb SINE Alu 34 134 -168 1871 161 0 7 chr1_random 2906555 2906847 -1414699 + AluJo SINE Alu 1 290 -22 1937 99 4 0 chr1_random 2907194 2907447 -1414099 + AluSp SINE Alu 1 254 -59 341 238 12 94 chr1_random 2907594 2907754 -1413792 - MLT1B LTR MaLR -81 309 163 1340 124 16 5 chr1_random 2907754 2907948 -1413598 + AluSx SINE Alu 1 196 -116 590 84 0 48 chr1_random 2907948 2908031 -1413515 + AluSq/x SINE Alu 63 141 -172 2373 103 0 0 chr1_random 2908225 2908537 -1413009 - AluSq SINE Alu -1 312 1 1970 311 64 39 chr1_random 2910579 2911437 -1410109 - MER45C DNA AcHobo -65 888 9 12828 45 1 8 chr1_random 2912907 2914568 -1406978 - L1P LINE L1 -2456 3690 2042 1985 177 10 65 chr1_random 2914657 2915070 -1406476 + MLT1B LTR MaLR 1 390 0 206 324 29 19 chr1_random 2915149 2915254 -1406292 + L2 LINE L2 3193 3298 -15 12614 97 7 2 chr1_random 2915476 2917268 -1404278 + L1PA3 LINE L1 614 2414 -3732 451 115 85 46 chr1_random 2917521 2917651 -1403895 - ALR/Alpha Satellite centromeric 0 172 38 5124 65 33 17 chr1_random 2917656 2918902 -1402644 + L1PA3 LINE L1 4748 6015 -140 265 214 26 82 chr1_random 2919269 2919425 -1402121 - MIR SINE MIR -52 156 5 870 86 0 79 chr1_random 2919455 2919595 -1401951 + AluSq/x SINE Alu 12 140 -172 243 189 113 0 chr1_random 2919608 2919661 -1401885 + MIR3 SINE MIR 118 176 -32 1488 87 29 0 chr1_random 2919819 2920051 -1401495 + AluSg/x SINE Alu 70 307 0 197 313 36 12 chr1_random 2921231 2921314 -1400232 - MIR SINE MIR -75 133 49 1937 104 13 25 chr1_random 2921522 2921838 -1399708 - AluSx SINE Alu 0 312 1 25 31 0 0 chr1_random 2921838 2921870 -1399676 + AT_rich Low_complexity Low_complexity 1 32 0 584 117 27 63 chr1_random 2921870 2921981 -1399565 - FLAM_C SINE Alu -24 119 13 2506 221 29 85 chr1_random 2922167 2922897 -1398649 - L1MCa LINE L1 -5715 711 23 1079 183 32 44 chr1_random 2922966 2923334 -1398212 - MLT2A2 LTR ERVL 0 453 178 8345 47 1 0 chr1_random 2923586 2924615 -1396931 + L1P LINE L1 4369 5398 -748 508 109 48 30 chr1_random 2924813 2924978 -1396568 + (TAGA)n Simple_repeat Simple_repeat 2 169 0 201 204 20 0 chr1_random 2924995 2925044 -1396502 + (TAGA)n Simple_repeat Simple_repeat 1 50 0 1501 124 104 4 chr1_random 2925567 2925826 -1395720 - AluJo SINE Alu -25 287 3 2098 125 0 3 chr1_random 2926385 2926697 -1394849 + AluSx SINE Alu 2 312 0 1111 122 6 0 chr1_random 2926860 2927024 -1394522 - AluJb SINE Alu -13 299 135 320 264 207 31 chr1_random 2927027 2927220 -1394326 + MIR SINE MIR 36 262 0 206 259 74 56 chr1_random 2927265 2927373 -1394173 - L2 LINE L2 -35 3278 3169 2474 37 0 3 chr1_random 2928340 2928638 -1392908 - AluY SINE Alu -14 297 1 318 221 158 11 chr1_random 2929397 2929492 -1392054 - MIR SINE MIR -109 153 45 404 179 0 0 chr1_random 2930391 2930458 -1391088 - MLT1A1 LTR MaLR -3 362 296 800 119 0 0 chr1_random 2930458 2930567 -1390979 + AluSq/x SINE Alu 9 117 -195 1042 118 34 92 chr1_random 2930569 2930665 -1390881 - MLT1A1 LTR MaLR -148 217 117 924 115 0 0 chr1_random 2930665 2930787 -1390759 - FLAM_C SINE Alu -11 122 1 1042 118 34 92 chr1_random 2930787 2930943 -1390603 - MLT1A1 LTR MaLR -248 117 1 251 361 0 35 chr1_random 2931360 2931529 -1390017 - L3 LINE CR1 -33 1544 1382 201 229 297 8 chr1_random 2931986 2932104 -1389442 + L2 LINE L2 1985 2136 -1178 206 340 25 25 chr1_random 2932137 2932296 -1389250 + L2 LINE L2 2413 2571 -743 1976 127 3 0 chr1_random 2932710 2933048 -1388498 + AluSq SINE Alu 1 339 0 563 0 0 15 chr1_random 2933401 2933469 -1388077 + (GAAA)n Simple_repeat Simple_repeat 2 68 0 1603 161 48 0 chr1_random 2933561 2933852 -1387694 + AluSq SINE Alu 1 305 -8 1823 119 31 0 chr1_random 2934418 2934704 -1386842 - AluSx SINE Alu -17 295 1 1067 216 54 0 chr1_random 2934712 2934934 -1386612 - MIR SINE MIR -21 241 8 573 228 95 19 chr1_random 2934949 2935160 -1386386 + MIR SINE MIR 17 243 -19 1233 123 15 2 chr1_random 2935621 2936349 -1385197 + ALR/Alpha Satellite centromeric 1 737 0 302 306 143 58 chr1_random 2942731 2943163 -1378383 + L1 LINE L1 2933 3401 -2745 227 251 22 47 chr1_random 2943168 2943483 -1378063 + A-rich Low_complexity Low_complexity 1 307 0 1035 156 33 3 chr1_random 2943625 2945101 -1376445 + ALR/Alpha Satellite centromeric 1 1520 -40 213 222 0 50 chr1_random 2945700 2945799 -1375747 + (CAAA)n Simple_repeat Simple_repeat 3 96 0 236 280 19 19 chr1_random 2946210 2946367 -1375179 + (CAAA)n Simple_repeat Simple_repeat 3 159 0 205 98 0 73 chr1_random 2946497 2946538 -1375008 + (CAAAAA)n Simple_repeat Simple_repeat 3 40 0 438 48 48 0 chr1_random 2951969 2952032 -1369514 - L1P LINE L1 -1363 4783 4718 17108 70 28 10 chr1_random 2952032 2954585 -1366961 - L1P LINE L1 -2986 3160 563 23829 45 20 242 chr1_random 2954799 2960593 -1360953 - L1P LINE L1 -1629 4517 9 539 149 56 19 chr1_random 2960596 2960861 -1360685 + ALR/Alpha Satellite centromeric 1 274 -18 1069 135 16 11 chr1_random 2961835 2963823 -1357723 - ALR/Alpha Satellite centromeric 0 1998 1 1057 138 20 1 chr1_random 2963960 2967577 -1353969 - ALR/Alpha Satellite centromeric 0 3686 1 1204 128 21 1 chr1_random 2967685 2975901 -1345645 + ALR/Alpha Satellite centromeric 1 8386 -52 306 263 33 20 chr1_random 2976122 2976274 -1345272 + ALR/Alpha Satellite centromeric 16 169 0 * 1041 138 24 5 chr1_random 2976138 2976974 -1344572 + ALR/Alpha Satellite centromeric 1 851 -59 693 135 62 11 chr1_random 2977069 2977281 -1344265 + ALR/Alpha Satellite centromeric 1 222 -41 974 151 28 11 chr1_random 2977407 2979471 -1342075 + ALR/Alpha Satellite centromeric 1 2097 -80 10490 75 105 5 chr1_random 2979475 2981220 -1340326 + L1P LINE L1 2 1921 -4225 193 179 8 41 chr1_random 2981326 2981449 -1340097 + T-rich Low_complexity Low_complexity 2 120 0 4973 80 34 7 chr1_random 2981793 2983133 -1338413 - L1PA7 LINE L1 -55 6099 4718 * 13848 48 14 2 chr1_random 2983127 2985031 -1336515 - L1PA7 LINE L1 -2980 3166 1240 1030 157 17 1 chr1_random 2985148 2990105 -1331441 + ALR/Alpha Satellite centromeric 1 5037 -80 29174 54 69 2 chr1_random 2990109 2994303 -1327243 + L1P LINE L1 2 4477 -1669 21685 53 7 0 chr1_random 2994406 2997341 -1324205 + L1PA4 LINE L1 1209 4161 -1985 5803 48 1 6 chr1_random 2997341 2998062 -1323484 + L1PA4 LINE L1 5436 6155 0 979 177 7 2 chr1_random 2998062 2999862 -1321684 + ALR/Alpha Satellite centromeric 1 1807 -33 15336 48 47 2 chr1_random 2999970 3004045 -1317501 - L1P LINE L1 -1201 4945 583 19829 51 34 4 chr1_random 3004166 3009242 -1312304 - L1P1 LINE L1 -668 5487 158 243 325 71 24 chr1_random 3211278 3211404 -1110142 - L2 LINE L2 -18 3295 3164 353 284 68 7 chr1_random 3211590 3211637 -1109909 - L2 LINE L2 -423 2891 2848 1577 174 16 41 chr1_random 3211637 3211953 -1109593 + AluJo SINE Alu 1 308 -4 353 284 68 7 chr1_random 3211953 3212053 -1109493 - L2 LINE L2 -466 2848 2735 266 309 94 52 chr1_random 3212050 3212241 -1109305 - MIR SINE MIR -29 233 35 * 198 283 0 0 chr1_random 3213665 3213824 -1107722 + (TG)n Simple_repeat Simple_repeat 1 159 0 388 339 0 0 chr1_random 3213844 3214024 -1107522 + (TG)n Simple_repeat Simple_repeat 1 180 0 269 340 0 0 chr1_random 3213963 3214104 -1107442 + (TGGG)n Simple_repeat Simple_repeat 1 141 0 * 243 353 6 0 chr1_random 3214063 3214233 -1107313 + (TG)n Simple_repeat Simple_repeat 1 171 0 * 303 249 0 0 chr1_random 3214264 3214433 -1107113 + (TG)n Simple_repeat Simple_repeat 1 169 0 743 106 25 27 chr1_random 3214862 3215148 -1106398 + (TG)n Simple_repeat Simple_repeat 1 285 0 309 146 24 12 chr1_random 3215260 3215342 -1106204 + (TG)n Simple_repeat Simple_repeat 2 84 0 375 367 6 17 chr1_random 3216226 3216406 -1105140 + (CACG)n Simple_repeat Simple_repeat 1 178 0 220 288 96 0 chr1_random 3224546 3224619 -1096927 - MIR SINE MIR -73 189 110 921 189 0 5 chr1_random 3227004 3227555 -1093991 + (CAGA)n Simple_repeat Simple_repeat 1 547 0 2354 61 0 3 chr1_random 3230227 3230521 -1091025 - AluY SINE Alu -10 301 9 201 254 0 0 chr1_random 3231759 3231814 -1089732 + (CA)n Simple_repeat Simple_repeat 2 56 0 227 132 0 75 chr1_random 3231848 3231901 -1089645 - L1PA4 LINE L1 -33 6122 6074 209 319 30 44 chr1_random 3232068 3232203 -1089343 + (CATG)n Simple_repeat Simple_repeat 4 136 0 270 256 17 3 chr1_random 3232474 3232545 -1089001 - MIR SINE MIR -58 150 77 870 256 43 0 chr1_random 3233887 3234145 -1087401 + MLT1C LTR MaLR 6 274 -193 627 262 25 0 chr1_random 3234217 3234419 -1087127 + MLT1C LTR MaLR 257 463 -4 242 203 0 0 chr1_random 3236075 3236134 -1085412 + GA-rich Low_complexity Low_complexity 2 60 0 250 286 5 70 chr1_random 3238577 3238762 -1082784 + (CCTG)n Simple_repeat Simple_repeat 1 173 0 * 315 267 0 67 chr1_random 3238650 3238800 -1082746 + (CCCG)n Simple_repeat Simple_repeat 2 141 0 210 37 0 0 chr1_random 3242900 3242927 -1078619 + (TAAA)n Simple_repeat Simple_repeat 2 28 0 195 69 0 0 chr1_random 3243169 3243198 -1078348 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 3306 164 17 0 chr1_random 3244211 3244729 -1076817 - MER1A DNA MER1_type 0 527 1 1086 266 51 0 chr1_random 3247700 3248050 -1073496 - MER89 LTR ERV1 0 559 192 1006 220 137 0 chr1_random 3248087 3248401 -1073145 - L1MC1 LINE L1 0 6333 5977 1969 285 52 59 chr1_random 3248467 3248638 -1072908 - L1MC1 LINE L1 -311 6091 5920 2233 100 0 0 chr1_random 3248638 3248938 -1072608 - AluSx SINE Alu -12 300 1 1969 285 52 59 chr1_random 3248938 3249487 -1072059 - L1MC1 LINE L1 -482 5920 5382 718 299 109 14 chr1_random 3249543 3249901 -1071645 + L1ME1 LINE L1 5770 6161 -5 231 133 22 0 chr1_random 3250602 3250647 -1070899 + GA-rich Low_complexity Low_complexity 2 47 0 5149 252 45 44 chr1_random 3250692 3250967 -1070579 - L1MC1 LINE L1 -2020 4195 3922 2029 90 18 4 chr1_random 3250967 3251246 -1070300 - AluSq SINE Alu 0 313 31 5149 252 45 44 chr1_random 3251246 3251668 -1069878 - L1MC1 LINE L1 -2293 3922 3502 1736 171 30 3 chr1_random 3251668 3251972 -1069574 + AluJb SINE Alu 1 312 0 5149 252 45 44 chr1_random 3251972 3253655 -1067891 - L1MC1 LINE L1 -2713 3502 1844 1428 98 0 10 chr1_random 3253663 3253856 -1067690 + AluSg SINE Alu 1 191 -119 227 405 0 0 chr1_random 3255066 3255219 -1066327 + (TG)n Simple_repeat Simple_repeat 2 154 0 376 339 6 22 chr1_random 3255277 3255460 -1066086 + (TG)n Simple_repeat Simple_repeat 1 180 0 477 319 0 11 chr1_random 3255483 3255665 -1065881 + (TG)n Simple_repeat Simple_repeat 1 180 0 221 193 35 0 chr1_random 3262557 3262614 -1058932 + (CACCC)n Simple_repeat Simple_repeat 3 61 0 25 31 0 0 chr1_random 3263100 3263132 -1058414 + GC_rich Low_complexity Low_complexity 1 32 0 2155 99 3 3 chr1_random 3265849 3266142 -1055404 + AluSq SINE Alu 9 301 -12 354 171 0 0 chr1_random 3268652 3268722 -1052824 + GA-rich Low_complexity Low_complexity 1 70 0 244 303 0 0 chr1_random 3275090 3275179 -1046367 + CT-rich Low_complexity Low_complexity 2 90 0 1982 114 47 7 chr1_random 3275288 3275586 -1045960 + AluSx SINE Alu 2 311 -1 405 299 15 0 chr1_random 3275700 3275834 -1045712 + (TG)n Simple_repeat Simple_repeat 2 137 0 345 361 147 17 chr1_random 3276103 3276458 -1045088 - L3 LINE CR1 -138 1439 1039 350 212 52 21 chr1_random 3277030 3277715 -1043831 + (GGGTG)n Simple_repeat Simple_repeat 1 706 0 228 179 54 0 chr1_random 3280082 3280194 -1041352 + (TCTA)n Simple_repeat Simple_repeat 1 118 0 210 71 0 0 chr1_random 3281879 3281907 -1039639 + (TG)n Simple_repeat Simple_repeat 1 28 0 222 233 0 0 chr1_random 3282861 3282947 -1038599 + (TG)n Simple_repeat Simple_repeat 1 86 0 198 194 0 129 chr1_random 3283760 3283822 -1037724 - MIR SINE MIR -92 170 117 281 333 0 0 chr1_random 3285584 3285668 -1035878 + G-rich Low_complexity Low_complexity 6 89 0 203 237 0 0 chr1_random 3286447 3286485 -1035061 + polypyrimidine Low_complexity Low_complexity 4 41 0 447 253 26 22 chr1_random 3290444 3290581 -1030965 - MIR SINE MIR -62 146 61 1015 144 12 0 chr1_random 3290764 3291189 -1030357 + (TGGA)n Simple_repeat Simple_repeat 1 430 0 211 342 123 66 chr1_random 3291288 3291531 -1030015 + L2 LINE L2 3016 3272 0 243 316 126 11 chr1_random 3291786 3291881 -1029665 + L2 LINE L2 3162 3267 -5 2038 109 0 20 chr1_random 3294688 3294990 -1026556 - AluSq SINE Alu -17 296 1 27 0 0 0 chr1_random 3295186 3295213 -1026333 + AT_rich Low_complexity Low_complexity 1 27 0 624 188 0 0 chr1_random 3295946 3296074 -1025472 + (TG)n Simple_repeat Simple_repeat 1 128 0 187 231 58 19 chr1_random 3296651 3296703 -1024843 + L2 LINE L2 3208 3261 -11 205 125 25 25 chr1_random 3298138 3298178 -1023368 + CT-rich Low_complexity Low_complexity 3 42 0 182 339 0 16 chr1_random 3298326 3298388 -1023158 - L2 LINE L2 -2049 1265 1205 1182 147 0 0 chr1_random 3302720 3302911 -1018635 + AluJb SINE Alu 87 277 -35 682 295 43 0 chr1_random 3304047 3304257 -1017289 - MER20 DNA MER1_type 0 219 1 441 318 52 19 chr1_random 3305177 3305388 -1016158 + MIR SINE MIR 28 245 -17 2280 96 3 0 chr1_random 3307494 3307795 -1013751 - AluSx SINE Alu -10 302 1 689 196 18 0 chr1_random 3310177 3310396 -1011150 + GA-rich Low_complexity Low_complexity 1 223 0 238 182 30 0 chr1_random 3310410 3310476 -1011070 + GA-rich Low_complexity Low_complexity 1 68 0 1823 145 45 0 chr1_random 3311778 3312067 -1009479 - AluJo SINE Alu -10 302 1 22 0 0 0 chr1_random 3315956 3315978 -1005568 + AT_rich Low_complexity Low_complexity 1 22 0 398 364 16 27 chr1_random 3316489 3316673 -1004873 + MIR SINE MIR 11 192 -70 833 333 47 21 chr1_random 3316758 3317272 -1004274 + L1ME LINE L1 140 666 -5539 1002 267 52 64 chr1_random 3317304 3317801 -1003745 + L1ME LINE L1 587 1088 -5117 1263 220 90 4 chr1_random 3317801 3318069 -1003477 - AluJo SINE Alu -21 291 1 1002 267 52 64 chr1_random 3318069 3318183 -1003363 + L1ME LINE L1 1088 1110 -5095 2251 91 0 25 chr1_random 3318183 3318502 -1003044 + AluY SINE Alu 1 311 0 1002 267 52 64 chr1_random 3318502 3318616 -1002930 + L1ME LINE L1 1110 1224 -4981 2145 256 67 24 chr1_random 3318649 3319594 -1001952 + L1ME2 LINE L1 5153 6141 -23 245 216 20 0 chr1_random 3319615 3319666 -1001880 + MIR SINE MIR 28 79 -183 1738 252 37 15 chr1_random 3320133 3320542 -1001004 - MER47B DNA MER2_type 0 418 1 207 349 8 87 chr1_random 3322602 3322728 -998818 + L2 LINE L2 3001 3116 -156 189 306 0 0 chr1_random 3324028 3324139 -997407 + (TG)n Simple_repeat Simple_repeat 2 112 0 328 330 0 0 chr1_random 3324153 3324259 -997287 + (TG)n Simple_repeat Simple_repeat 1 106 0 442 358 0 0 chr1_random 3324854 3325264 -996282 + (CA)n Simple_repeat Simple_repeat 1 410 0 353 355 0 0 chr1_random 3325293 3325445 -996101 + (CA)n Simple_repeat Simple_repeat 1 152 0 417 330 0 11 chr1_random 3325459 3325641 -995905 + (CA)n Simple_repeat Simple_repeat 1 180 0 251 265 0 0 chr1_random 3325655 3325723 -995823 + (CA)n Simple_repeat Simple_repeat 1 68 0 523 324 6 0 chr1_random 3325749 3325925 -995621 + (CA)n Simple_repeat Simple_repeat 1 177 0 360 0 0 0 chr1_random 3326481 3326521 -995025 + (TG)n Simple_repeat Simple_repeat 2 41 0 231 307 67 0 chr1_random 3327244 3327319 -994227 + MIR SINE MIR 117 196 -66 186 368 13 0 chr1_random 3327968 3328044 -993502 - MIR SINE MIR -114 148 72 2154 170 70 5 chr1_random 3328075 3328475 -993071 - MSTB LTR MaLR 0 426 1 1326 230 65 79 chr1_random 3328999 3329568 -991978 + L1MB5 LINE L1 5614 6174 0 184 328 17 0 chr1_random 3330660 3330718 -990828 - L2 LINE L2 0 3313 3255 497 236 32 0 chr1_random 3333758 3333881 -987665 + MER20 DNA MER1_type 90 216 -3 571 234 155 17 chr1_random 3335682 3335921 -985625 + MLT1C LTR MaLR 9 280 -187 822 192 39 5 chr1_random 3336375 3336578 -984968 + MLT1C LTR MaLR 258 467 0 255 204 0 29 chr1_random 3339882 3339985 -981561 + (CA)n Simple_repeat Simple_repeat 1 100 0 182 230 0 11 chr1_random 3340062 3340149 -981397 + (CA)n Simple_repeat Simple_repeat 1 86 0 395 243 0 7 chr1_random 3340222 3340370 -981176 + (CA)n Simple_repeat Simple_repeat 2 148 0 230 203 0 14 chr1_random 3340395 3340464 -981082 + (CA)n Simple_repeat Simple_repeat 1 68 0 212 143 24 0 chr1_random 3340966 3341008 -980538 + GA-rich Low_complexity Low_complexity 2 44 0 297 321 38 8 chr1_random 3343876 3344007 -977539 + MIR3 SINE MIR 36 170 -38 475 219 0 13 chr1_random 3344562 3344717 -976829 + (CA)n Simple_repeat Simple_repeat 1 153 0 279 214 0 0 chr1_random 3344751 3344821 -976725 + (CA)n Simple_repeat Simple_repeat 1 70 0 191 376 21 11 chr1_random 3345327 3345420 -976126 - MIR SINE MIR -60 202 109 1742 110 0 8 chr1_random 3395535 3395781 -925765 + AluSg SINE Alu 63 306 -4 1679 291 50 29 chr1_random 3395795 3396305 -925241 - L1MEc LINE L1 -4566 2556 2019 2031 139 0 3 chr1_random 3396305 3396614 -924932 - AluJb SINE Alu -4 308 1 1679 291 50 29 chr1_random 3396614 3396956 -924590 - L1MEc LINE L1 -5103 2019 1686 440 165 11 0 chr1_random 3396960 3397051 -924495 + (TG)n Simple_repeat Simple_repeat 2 93 0 1064 192 96 15 chr1_random 3397068 3397329 -924217 - AluJb SINE Alu -30 282 1 618 219 5 53 chr1_random 3397329 3397533 -924013 - L1MEc LINE L1 -4953 1657 1307 338 364 11 26 chr1_random 3397685 3397957 -923589 - L1MEc LINE L1 -5578 818 551 642 169 48 16 chr1_random 3398112 3398236 -923310 - AluJb SINE Alu -20 292 165 784 285 81 3 chr1_random 3400208 3400531 -921015 - MLT1A1 LTR MaLR -17 348 1 239 267 105 48 chr1_random 3402331 3402436 -919110 - MIR SINE MIR -62 146 36 180 176 0 0 chr1_random 3409038 3409072 -912474 + (CA)n Simple_repeat Simple_repeat 1 34 0 286 210 0 0 chr1_random 3415515 3415577 -905969 - MER20 DNA MER1_type -141 78 17 323 301 157 44 chr1_random 3417113 3417634 -903912 + HAL1 LINE L1 821 1400 -1107 418 340 127 32 chr1_random 3417657 3418036 -903510 + HAL1 LINE L1 1356 1770 -737 319 260 89 68 chr1_random 3418400 3418546 -903000 + HAL1 LINE L1 2359 2507 0 413 269 69 28 chr1_random 3419808 3419953 -901593 - MIR SINE MIR -35 227 77 196 259 0 0 chr1_random 3422229 3422284 -899262 - MIR SINE MIR -63 145 91 236 276 17 0 chr1_random 3423067 3423125 -898421 + MIR SINE MIR 80 138 -124 185 346 148 0 chr1_random 3423537 3423638 -897908 - L2 LINE L2 -1 3312 3197 411 211 0 0 chr1_random 3427672 3427843 -893703 + (CA)n Simple_repeat Simple_repeat 1 171 0 455 263 12 12 chr1_random 3427880 3428135 -893411 + (CA)n Simple_repeat Simple_repeat 1 255 0 270 274 0 0 chr1_random 3428275 3428454 -893092 + (CA)n Simple_repeat Simple_repeat 1 179 0 245 213 16 16 chr1_random 3428465 3428526 -893020 + LTR33 LTR ERVL 106 166 -355 757 172 10 103 chr1_random 3428885 3429089 -892457 + MER5A DNA MER1_type 1 185 -4 606 296 60 0 chr1_random 3429092 3429291 -892255 + MIR SINE MIR 9 219 -43 191 347 56 0 chr1_random 3429681 3429753 -891793 + MIR SINE MIR 80 155 -107 399 258 66 20 chr1_random 3434462 3434613 -886933 - L3 LINE CR1 -13 1564 1407 231 191 32 16 chr1_random 3435160 3435223 -886323 - MER117 DNA MER1_type -37 160 97 345 398 12 0 chr1_random 3435356 3435517 -886029 + L2 LINE L2 3150 3312 -1 200 301 53 26 chr1_random 3435944 3436057 -885489 + MIR3 SINE MIR 12 127 -81 2564 111 5 22 chr1_random 3439556 3439925 -881621 + THE1B LTR MaLR 1 363 -1 1415 148 0 183 chr1_random 3440272 3440680 -880866 - AluJo SINE Alu 0 302 3 1736 155 16 13 chr1_random 3440682 3440992 -880554 - AluJo SINE Alu -1 311 1 2280 88 0 0 chr1_random 3441124 3441418 -880128 + AluY SINE Alu 7 300 -11 429 215 54 27 chr1_random 3445247 3445406 -876140 + MLT1C LTR MaLR 1 168 -197 212 326 23 0 chr1_random 3446960 3447046 -874500 - MIR SINE MIR -60 148 61 2245 84 7 3 chr1_random 3449851 3450148 -871398 - AluSx SINE Alu -14 298 1 2119 162 70 62 chr1_random 3451894 3452395 -869151 + MLT1D LTR MaLR 1 505 0 236 241 9 0 chr1_random 3454085 3454201 -867345 + (CAGGA)n Simple_repeat Simple_repeat 3 119 0 1093 241 164 41 chr1_random 3454579 3454994 -866552 + MLT1C LTR MaLR 1 466 -1 381 291 150 22 chr1_random 3455028 3455348 -866198 + L2 LINE L2 2911 3271 -42 431 236 57 8 chr1_random 3455468 3455591 -865955 - MER103 DNA DNA 0 166 38 462 272 55 11 chr1_random 3458965 3459158 -862388 + MLT1C LTR MaLR 281 467 0 221 239 248 18 chr1_random 3461023 3461132 -860414 - MIR3 SINE MIR -74 134 1 184 311 27 0 chr1_random 3461266 3461340 -860206 + MIR SINE MIR 70 145 -117 404 328 162 10 chr1_random 3462250 3462454 -859092 - MIR SINE MIR -17 245 11 31 0 0 0 chr1_random 3462491 3462522 -859024 + AT_rich Low_complexity Low_complexity 1 31 0 285 270 44 29 chr1_random 3462571 3462708 -858838 + L1MEc LINE L1 45 183 -6213 350 266 53 0 chr1_random 3463680 3463774 -857772 - MIR SINE MIR -78 184 86 593 224 14 73 chr1_random 3465031 3465250 -856296 + Charlie5 DNA MER1_type 2376 2581 -31 282 245 115 79 chr1_random 3465250 3465389 -856157 + MIR SINE MIR 60 203 -59 249 267 26 43 chr1_random 3465823 3465939 -855607 + MIR3 SINE MIR 63 176 -32 256 190 51 0 chr1_random 3470007 3470086 -851460 + (TG)n Simple_repeat Simple_repeat 1 83 0 491 327 4 0 chr1_random 3470134 3470426 -851120 + (TG)n Simple_repeat Simple_repeat 1 293 0 427 312 0 0 chr1_random 3470454 3470624 -850922 + (TG)n Simple_repeat Simple_repeat 1 170 0 222 271 0 0 chr1_random 3470692 3470799 -850747 + (TG)n Simple_repeat Simple_repeat 1 107 0 376 335 0 49 chr1_random 3472914 3473187 -848359 + (CACG)n Simple_repeat Simple_repeat 1 259 0 221 296 0 0 chr1_random 3473821 3473875 -847671 - MIR3 SINE MIR -43 165 112 221 296 0 0 chr1_random 3473881 3473935 -847611 - MIR3 SINE MIR -43 165 112 221 296 0 0 chr1_random 3473941 3473995 -847551 - MIR3 SINE MIR -43 165 112 237 278 0 0 chr1_random 3474001 3474055 -847491 - MIR3 SINE MIR -43 165 112 221 296 0 0 chr1_random 3474061 3474115 -847431 - MIR3 SINE MIR -43 165 112 210 315 0 0 chr1_random 3474121 3474175 -847371 - MIR3 SINE MIR -43 165 112 210 315 0 0 chr1_random 3474181 3474235 -847311 - MIR3 SINE MIR -43 165 112 210 315 0 0 chr1_random 3474241 3474295 -847251 - MIR3 SINE MIR -43 165 112 210 315 0 0 chr1_random 3474301 3474355 -847191 - MIR3 SINE MIR -43 165 112 210 315 0 0 chr1_random 3474361 3474415 -847131 - MIR3 SINE MIR -43 165 112 210 315 0 0 chr1_random 3474421 3474475 -847071 - MIR3 SINE MIR -43 165 112 210 315 0 0 chr1_random 3474481 3474535 -847011 - MIR3 SINE MIR -43 165 112 210 315 0 0 chr1_random 3474541 3474595 -846951 - MIR3 SINE MIR -43 165 112 213 296 112 51 chr1_random 3474601 3474699 -846847 - MIR3 SINE MIR -43 165 62 272 226 45 45 chr1_random 3476092 3476225 -845321 + C-rich Low_complexity Low_complexity 5 137 0 507 331 80 32 chr1_random 3476238 3476647 -844899 - L1MEd LINE L1 -2671 3458 832 228 238 84 46 chr1_random 3479730 3479848 -841698 + MIR SINE MIR 12 139 -69 184 216 0 0 chr1_random 3480502 3480539 -841007 - MIR SINE MIR -61 147 111 224 306 0 12 chr1_random 3481652 3481737 -839809 + (CTCGG)n Simple_repeat Simple_repeat 5 88 0 329 350 30 86 chr1_random 3481957 3482260 -839286 - L1 LINE L1 -1710 4436 4151 373 337 105 6 chr1_random 3482628 3482981 -838565 - L1 LINE L1 -2161 3985 3598 2502 55 0 3 chr1_random 3482981 3483288 -838258 + AluY SINE Alu 1 306 -5 384 332 172 8 chr1_random 3483432 3483682 -837864 - L1 LINE L1 -2687 3459 3169 1893 137 24 21 chr1_random 3483728 3483766 -837780 + L1PB4 LINE L1 5400 5436 -720 1807 163 7 13 chr1_random 3483766 3484067 -837479 + AluJb SINE Alu 1 299 -13 1893 137 24 21 chr1_random 3484067 3484401 -837145 + L1PB4 LINE L1 5436 5773 -383 398 19 0 19 chr1_random 3484442 3484494 -837052 + (TA)n Simple_repeat Simple_repeat 1 51 0 2051 160 34 0 chr1_random 3484532 3484882 -836664 + L1PB4 LINE L1 5785 6146 -10 250 268 6 60 chr1_random 3486358 3486526 -835020 + (GGGTG)n Simple_repeat Simple_repeat 3 161 0 232 229 17 86 chr1_random 3486637 3486812 -834734 + (GGGTG)n Simple_repeat Simple_repeat 4 166 0 358 339 18 18 chr1_random 3490140 3490308 -831238 + L1MB5 LINE L1 5596 5763 -415 514 273 46 0 chr1_random 3490325 3490559 -830987 + L1MB5 LINE L1 5842 6174 0 1795 139 10 14 chr1_random 3492429 3492723 -828823 + AluJo SINE Alu 7 299 -13 387 251 34 0 chr1_random 3494524 3494630 -826916 - MLT1D LTR MaLR -8 459 368 578 262 51 17 chr1_random 3494674 3494911 -826635 - MLT1D LTR MaLR -260 245 1 207 0 0 0 chr1_random 3495165 3495188 -826358 + (CCCA)n Simple_repeat Simple_repeat 2 24 0 907 270 23 58 chr1_random 3496926 3497322 -824224 + MLT1D LTR MaLR 116 497 -8 576 117 0 0 chr1_random 3498364 3498441 -823105 + AluJo SINE Alu 6 82 -230 1207 185 28 33 chr1_random 3498531 3498835 -822711 + LTR10B LTR ERV1 303 547 0 1287 162 13 9 chr1_random 3498836 3499064 -822482 + AluJo SINE Alu 84 312 0 986 189 6 0 chr1_random 3499381 3499556 -821990 + FRAM SINE Alu 1 175 -1 2217 94 3 3 chr1_random 3499732 3500039 -821507 + AluSg SINE Alu 1 307 -3 1284 252 80 0 chr1_random 3500152 3500525 -821021 - L1MC2 LINE L1 -9 6335 5933 291 245 21 11 chr1_random 3502104 3502198 -819348 + (TCTCTG)n Simple_repeat Simple_repeat 2 96 0 192 405 12 0 chr1_random 3504325 3504409 -817137 - MIR SINE MIR -70 192 108 1996 124 0 0 chr1_random 3512248 3512558 -808988 - AluSx SINE Alu 0 310 1 2449 85 38 44 chr1_random 3513111 3513476 -808070 - THE1B LTR MaLR -1 363 1 215 291 63 0 chr1_random 3513597 3513676 -807870 - MIR3 SINE MIR -43 165 82 257 272 29 17 chr1_random 3514471 3514644 -806902 + (CAGCC)n Simple_repeat Simple_repeat 3 177 0 202 344 71 26 chr1_random 3515001 3515155 -806391 + MIR3 SINE MIR 2 162 -46 232 307 0 0 chr1_random 3517918 3517993 -803553 + G-rich Low_complexity Low_complexity 1 75 0 191 302 47 23 chr1_random 3518767 3518853 -802693 - MIR SINE MIR -74 134 47 604 317 102 10 chr1_random 3520031 3520425 -801121 + L2 LINE L2 2432 2861 -453 213 358 86 41 chr1_random 3520479 3520722 -800824 + L2 LINE L2 3019 3272 0 225 141 85 68 chr1_random 3521586 3521763 -799783 + (CAGC)n Simple_repeat Simple_repeat 1 180 0 313 262 0 49 chr1_random 3523104 3523287 -798259 + (TG)n Simple_repeat Simple_repeat 1 174 0 233 269 0 47 chr1_random 3523353 3523502 -798044 + (TG)n Simple_repeat Simple_repeat 1 142 0 331 232 0 60 chr1_random 3523583 3523734 -797812 + (TG)n Simple_repeat Simple_repeat 1 142 0 387 271 0 39 chr1_random 3523891 3524072 -797474 + (TG)n Simple_repeat Simple_repeat 1 174 0 217 278 0 43 chr1_random 3524105 3524220 -797326 + (TG)n Simple_repeat Simple_repeat 1 110 0 337 299 75 0 chr1_random 3526016 3526150 -795396 - MIR SINE MIR -117 145 2 192 303 143 17 chr1_random 3526492 3526611 -794935 + L2 LINE L2 3139 3272 0 345 305 84 24 chr1_random 3526773 3526940 -794606 - MER69A DNA AcHobo 0 177 1 213 236 0 36 chr1_random 3529667 3529722 -791824 + G-rich Low_complexity Low_complexity 3 55 0 2042 158 0 0 chr1_random 3530677 3530987 -790559 + AluJo SINE Alu 1 310 -2 296 247 18 47 chr1_random 3533011 3533181 -788365 + C-rich Low_complexity Low_complexity 3 167 0 1047 229 66 29 chr1_random 3533981 3534361 -787185 + MLT1C LTR MaLR 68 461 -6 228 164 36 18 chr1_random 3534461 3534516 -787030 + (CAGAGA)n Simple_repeat Simple_repeat 5 60 0 22 0 0 0 chr1_random 3534795 3534817 -786729 + GC_rich Low_complexity Low_complexity 1 22 0 22 0 0 0 chr1_random 3535201 3535223 -786323 + GC_rich Low_complexity Low_complexity 1 22 0 383 263 163 21 chr1_random 3537980 3538170 -783376 - MER20 DNA MER1_type 0 219 3 1149 177 95 7 chr1_random 3539748 3540031 -781515 + THE1C LTR MaLR 68 375 0 2805 122 122 73 chr1_random 3540031 3540657 -780889 + THE1C-int LTR MaLR 1 656 -924 1071 141 10 15 chr1_random 3540701 3540899 -780647 + THE1C-int LTR MaLR 823 1019 -561 6263 76 16 3 chr1_random 3540899 3541784 -779762 - LTR13 LTR ERVK 0 1007 112 12634 56 5 1 chr1_random 3941784 3944049 -377497 + L1PA4 LINE L1 3744 6012 -143 4760 180 20 36 chr1_random 3945108 3945219 -376327 - L1MA4A LINE L1 -5 6298 6187 1587 177 26 35 chr1_random 3945219 3945529 -376017 - AluJo SINE Alu -5 307 1 4760 180 20 36 chr1_random 3945529 3946222 -375324 - L1MA4A LINE L1 -116 6187 5484 246 32 0 0 chr1_random 3946222 3946253 -375293 + (TTTTG)n Simple_repeat Simple_repeat 2 32 0 4760 180 20 36 chr1_random 3946253 3947033 -374513 - L1MA4A LINE L1 -819 5484 4730 309 201 56 56 chr1_random 3947134 3947278 -374268 - L1MA4A LINE L1 -1698 4448 4305 4419 212 90 3 chr1_random 3947299 3948499 -373047 - L1MA4A LINE L1 -2479 3667 2364 23 33 0 0 chr1_random 3949194 3949224 -372322 + AT_rich Low_complexity Low_complexity 1 30 0 647 203 0 15 chr1_random 3950015 3950148 -371398 - MST-int LTR MaLR -20 1631 1501 1780 229 5 3 chr1_random 3950157 3950528 -371018 - HERVL-B3 LTR ERVL -5243 411 40 723 161 46 0 chr1_random 3950528 3950658 -370888 - MSTA LTR MaLR -290 138 3 277 236 21 14 chr1_random 3950697 3950837 -370709 + (TA)n Simple_repeat Simple_repeat 1 141 0 1883 258 19 48 chr1_random 3950842 3951358 -370188 - MLT2B3 LTR ERVL -53 501 1 669 249 62 9 chr1_random 3951373 3951694 -369852 - L1MC/D LINE L1 -743 5403 5127 22 0 0 0 chr1_random 3952841 3952863 -368683 + AT_rich Low_complexity Low_complexity 1 22 0 1262 152 12 8 chr1_random 3953120 3953349 -368197 + MSTC LTR MaLR 1 198 -198 297 0 0 0 chr1_random 3953416 3953449 -368097 + (A)n Simple_repeat Simple_repeat 1 33 0 602 278 103 18 chr1_random 3954730 3955058 -366488 + L1M4 LINE L1 3497 3868 -2278 298 242 0 0 chr1_random 3955056 3955118 -366428 + L1M4 LINE L1 5047 5108 -1038 * 24 0 0 0 chr1_random 3955261 3955285 -366261 + AT_rich Low_complexity Low_complexity 1 24 0 201 203 34 0 chr1_random 3955556 3955615 -365931 + (TAGA)n Simple_repeat Simple_repeat 1 61 0 21 36 0 0 chr1_random 3955722 3955750 -365796 + AT_rich Low_complexity Low_complexity 1 28 0 12809 74 7 15 chr1_random 3956280 3956567 -364979 - L1P3 LINE L1 -531 5623 5335 2293 97 0 3 chr1_random 3956567 3956866 -364680 + AluY SINE Alu 5 302 -9 12809 74 7 15 chr1_random 3956866 3958583 -362963 - L1P3 LINE L1 -819 5335 3620 2838 220 94 44 chr1_random 3959030 3960160 -361386 - L1ME2 LINE L1 -11 6222 5032 4461 252 57 38 chr1_random 3960171 3961077 -360469 - L1ME2 LINE L1 -2062 4153 3266 1786 145 6 55 chr1_random 3961077 3961388 -360158 - AluJb SINE Alu -16 296 1 4461 252 57 38 chr1_random 3961388 3962573 -358973 - L1ME2 LINE L1 -2949 3266 2057 1007 203 35 69 chr1_random 3962573 3962805 -358741 + MER58A DNA MER1_type 1 224 0 4461 252 57 38 chr1_random 3962805 3962886 -358660 - L1ME2 LINE L1 -4158 2057 1979 3167 269 99 31 chr1_random 3962968 3964636 -356910 - L1ME2 LINE L1 -4578 1818 37 329 275 0 78 chr1_random 3964675 3964817 -356729 + L3 LINE CR1 929 1059 -518 501 347 69 67 chr1_random 3964827 3965681 -355865 - L2 LINE L2 0 3272 2410 391 247 62 10 chr1_random 3966349 3966446 -355100 + MLT1J LTR MaLR 1 102 -409 646 332 62 36 chr1_random 3966612 3966970 -354576 - LTR33 LTR ERVL -154 367 1 1111 242 116 7 chr1_random 3966985 3967287 -354259 + MLT1J LTR MaLR 170 504 -7 2696 23 10 0 chr1_random 3967375 3967683 -353863 - AluYa5 SINE Alu 0 311 1 303 396 42 4 chr1_random 3967755 3967995 -353551 - L2 LINE L2 -2848 466 218 4980 184 22 19 chr1_random 3968741 3970465 -351081 + L1MA4 LINE L1 4567 6300 0 3407 144 48 3 chr1_random 3970488 3971065 -350481 + LTR26 LTR ERV1 1 603 0 2085 110 7 3 chr1_random 3972015 3972307 -349239 + AluSg SINE Alu 15 307 -3 18224 39 57 2 chr1_random 3972572 3974931 -346615 + L1P LINE L1 670 3157 -2989 2029 103 3 81 chr1_random 3975138 3975458 -346088 - AluSq SINE Alu -18 295 1 317 367 41 25 chr1_random 3975554 3975750 -345796 + LTR16C LTR ERVL 201 399 -92 2193 317 83 25 chr1_random 3975754 3977158 -344388 + L2 LINE L2 1823 3299 -14 841 320 68 46 chr1_random 3977216 3977719 -343827 - LTR33A LTR ERVL -8 515 2 993 347 25 11 chr1_random 3977726 3978161 -343385 + LTR16B LTR ERVL 8 448 -16 386 134 45 0 chr1_random 3978530 3978597 -342949 - MLT1B LTR MaLR 0 390 321 1175 73 7 13 chr1_random 3978597 3978748 -342798 + AluSg SINE Alu 1 150 -160 2241 228 5 5 chr1_random 3980693 3981141 -340405 - MST-int LTR MaLR -323 1328 881 785 61 9 9 chr1_random 3981247 3981361 -340185 - L1P LINE L1 -1079 5067 4954 * 7455 28 1 0 chr1_random 3981359 3982243 -339303 + L1P LINE L1 4081 4965 -1181 7349 43 1 0 chr1_random 3982274 3983348 -338198 + L1PA4 LINE L1 5077 6152 -3 918 267 73 17 chr1_random 3984147 3984503 -337043 - MLT1D LTR MaLR -8 497 122 209 188 0 145 chr1_random 3984900 3984969 -336577 + L2 LINE L2 3251 3309 -4 181 194 0 0 chr1_random 3987369 3987400 -334146 + L2 LINE L2 3263 3293 -20 351 339 120 60 chr1_random 3987512 3987863 -333683 - L2 LINE L2 -8 3264 2893 2151 161 16 0 chr1_random 3987977 3988355 -333191 + L1PB4 LINE L1 5766 6149 -7 235 136 45 0 chr1_random 3988392 3988436 -333110 - MIR SINE MIR -33 229 184 213 226 81 0 chr1_random 3988789 3988851 -332695 - MIR SINE MIR -12 250 184 446 235 79 78 chr1_random 3989207 3989493 -332053 - MLT1J LTR MaLR -210 301 15 462 291 68 0 chr1_random 3989496 3989644 -331902 - MIR SINE MIR -59 203 46 330 256 112 0 chr1_random 3989695 3989820 -331726 + MIR SINE MIR 78 216 -46 2012 154 15 80 chr1_random 3990568 3990958 -330588 + MLT1A1 LTR MaLR 1 365 0 280 308 101 31 chr1_random 3991180 3991407 -330139 - L1MC/D LINE L1 -1948 5860 5618 315 324 69 6 chr1_random 3991417 3991590 -329956 - L1P4 LINE L1 -613 5555 5372 216 282 204 10 chr1_random 3992151 3992254 -329292 - L2 LINE L2 -5 3308 3186 1917 198 28 8 chr1_random 3992343 3992701 -328845 + MLT1A1 LTR MaLR 1 365 0 12749 87 2 3 chr1_random 3992837 3994540 -327006 - L1P3 LINE L1 -4759 1702 2 555 306 83 8 chr1_random 3995022 3995264 -326282 - MIR SINE MIR 0 262 3 1566 198 155 36 chr1_random 3995530 3995974 -325572 + MLT1D LTR MaLR 7 503 -2 352 336 56 0 chr1_random 3996045 3996152 -325394 - MIR SINE MIR -71 137 25 630 243 109 30 chr1_random 3996941 3997143 -324403 - MIR SINE MIR -14 248 31 251 183 211 14 chr1_random 3997170 3997241 -324305 - MIR3 SINE MIR -37 171 87 335 303 18 9 chr1_random 3997611 3997720 -323826 - MIR SINE MIR -116 146 37 182 333 42 25 chr1_random 3998193 3998313 -323233 + MIR3 SINE MIR 33 154 -54 212 374 71 19 chr1_random 3998656 3998811 -322735 + L2 LINE L2 2810 2972 -300 279 157 0 0 chr1_random 3998812 3998863 -322683 + GA-rich Low_complexity Low_complexity 1 51 0 271 291 0 23 chr1_random 3999463 3999549 -321997 - L2 LINE L2 -1 3312 3229 217 318 176 0 chr1_random 3999588 3999673 -321873 + MIR SINE MIR 43 142 -66 318 232 14 155 chr1_random 3999700 3999842 -321704 - L2 LINE L2 -30 3242 3121 685 254 49 57 chr1_random 3999951 4000195 -321351 + MIR SINE MIR 20 261 -1 254 365 77 0 chr1_random 4000931 4001035 -320511 + L2 LINE L2 3160 3271 -1 219 270 60 30 chr1_random 4001038 4001138 -320408 + L3 LINE CR1 1100 1202 -375 263 152 22 0 chr1_random 4001190 4001236 -320310 - MLT2F LTR ERVL 0 663 617 180 152 0 0 chr1_random 4001238 4001271 -320275 + (ATTG)n Simple_repeat Simple_repeat 3 35 0 23 54 0 0 chr1_random 4001304 4001341 -320205 + AT_rich Low_complexity Low_complexity 1 37 0 622 187 0 0 chr1_random 4001465 4001572 -319974 - MLT1E3 LTR MaLR -472 152 46 507 248 0 8 chr1_random 4001577 4001698 -319848 - MLT2F LTR ERVL -523 140 21 226 313 89 18 chr1_random 4001761 4001873 -319673 + L3 LINE CR1 1270 1389 -188 1249 213 211 47 chr1_random 4002470 4002978 -318568 - MLT1G1 LTR MaLR 0 595 5 242 311 113 9 chr1_random 4003288 4003394 -318152 + MER5A DNA MER1_type 22 138 -51 770 293 28 16 chr1_random 4004233 4004486 -317060 - MIR SINE MIR 0 262 7 2331 109 0 0 chr1_random 4004516 4004818 -316728 + AluSx SINE Alu 1 302 -10 586 142 9 35 chr1_random 4005599 4005712 -315834 + L1MA8 LINE L1 6179 6288 -3 198 71 0 0 chr1_random 4007750 4007778 -313768 + (TC)n Simple_repeat Simple_repeat 2 29 0 292 234 39 26 chr1_random 4009032 4009109 -312437 - MLT1K LTR MaLR -2 586 509 2073 161 40 11 chr1_random 4009948 4010302 -311244 - MLT1A1 LTR MaLR -1 364 1 307 281 92 56 chr1_random 4010717 4010913 -310633 + MIR SINE MIR 20 222 -40 243 313 60 0 chr1_random 4011005 4011072 -310474 + MIR SINE MIR 19 89 -173 * 451 217 16 85 chr1_random 4011070 4011199 -310347 - L2 LINE L2 -4 3309 3190 512 335 7 13 chr1_random 4011357 4011509 -310037 + MIR3 SINE MIR 20 170 -38 494 287 102 0 chr1_random 4011618 4011834 -309712 - MIR SINE MIR -4 258 21 508 290 165 0 chr1_random 4012473 4012649 -308897 - MIR SINE MIR -21 241 37 186 368 0 0 chr1_random 4013266 4013334 -308212 + MIR SINE MIR 36 103 -105 438 250 55 33 chr1_random 4013791 4013956 -307590 + MIR SINE MIR 42 206 -56 354 191 0 0 chr1_random 4013967 4014035 -307511 + L1MC5 LINE L1 7712 7779 -182 6734 89 0 7 chr1_random 4014076 4015116 -306430 - L1PA13 LINE L1 -1 6162 5120 4176 171 7 5 chr1_random 4015123 4015879 -305667 + L1PA13 LINE L1 4379 5135 -1011 3114 184 48 3 chr1_random 4015870 4016896 -304650 + L1MB7 LINE L1 4847 5913 -271 * 3969 79 0 2 chr1_random 4016896 4017371 -304175 + L1PA8 LINE L1 5681 6171 -1 1525 172 46 14 chr1_random 4017371 4017653 -303893 + L1MB8 LINE L1 5879 6172 -6 425 213 43 28 chr1_random 4017689 4017830 -303716 + L1MC5 LINE L1 7794 7936 -25 218 273 57 11 chr1_random 4017953 4018041 -303505 - L3b LINE CR1 -206 1377 1286 414 271 8 17 chr1_random 4018478 4018596 -302950 + MLT1L LTR MaLR 124 240 -375 368 265 10 10 chr1_random 4018836 4018938 -302608 + MLT1L LTR MaLR 471 572 -43 242 274 24 24 chr1_random 4018988 4019072 -302474 + MIR SINE MIR 30 113 -95 886 201 46 0 chr1_random 4019086 4019260 -302286 - MER5A DNA MER1_type -7 182 1 388 278 56 14 chr1_random 4019262 4019406 -302140 + MIR SINE MIR 113 262 0 525 271 72 28 chr1_random 4020102 4020292 -301254 - MIR SINE MIR -12 250 55 216 323 77 58 chr1_random 4020319 4020474 -301072 - MIR SINE MIR -58 204 47 413 215 25 58 chr1_random 4020813 4020934 -300612 - MIR SINE MIR -75 187 71 321 259 241 0 chr1_random 4021033 4021145 -300401 + MIR SINE MIR 86 224 -38 246 32 0 0 chr1_random 4021173 4021204 -300342 + (TG)n Simple_repeat Simple_repeat 2 32 0 1388 203 121 22 chr1_random 4021324 4021688 -299858 - L1ME3A LINE L1 -6 6164 5765 281 282 29 38 chr1_random 4021710 4021858 -299688 - MIR SINE MIR -62 146 34 387 330 39 69 chr1_random 4022253 4022486 -299060 - L2 LINE L2 -64 3208 2983 543 267 27 33 chr1_random 4022517 4022667 -298879 - MER5B DNA MER1_type -16 162 14 4178 161 23 46 chr1_random 4022905 4023649 -297897 - L1MB3 LINE L1 -2 6181 5422 1883 114 0 8 chr1_random 4023649 4023903 -297643 - AluSc SINE Alu -57 252 1 4178 161 23 46 chr1_random 4023903 4023928 -297618 - L1MB3 LINE L1 -761 5422 5398 227 53 0 26 chr1_random 4023928 4023966 -297580 + (TTGG)n Simple_repeat Simple_repeat 4 40 0 4178 161 23 46 chr1_random 4023966 4024678 -296868 - L1MB3 LINE L1 -785 5398 4762 826 168 37 12 chr1_random 4024688 4024849 -296697 - FRAM SINE Alu -9 167 3 3538 200 25 26 chr1_random 4024855 4025655 -295891 - L1MB3 LINE L1 -1378 4768 3970 440 355 59 10 chr1_random 4025661 4025951 -295595 - L2 LINE L2 -594 2720 2417 2297 95 6 13 chr1_random 4026320 4026635 -294911 + AluSp SINE Alu 1 313 0 218 260 301 50 chr1_random 4027439 4027658 -293888 + L2 LINE L2 2999 3272 0 2769 168 17 11 chr1_random 4027749 4028213 -293333 - MLT1C LTR MaLR 0 467 1 263 306 51 31 chr1_random 4028333 4028431 -293115 + MIR3 SINE MIR 94 193 -15 1337 148 56 18 chr1_random 4029013 4029438 -292108 - LTR54 LTR ERV1 0 510 3 413 293 132 0 chr1_random 4029670 4029844 -291702 + MIR SINE MIR 60 256 -6 180 197 49 66 chr1_random 4029864 4029925 -291621 + L2 LINE L2 3214 3273 -40 2584 233 15 6 chr1_random 4030362 4030899 -290647 + MLT1F LTR MaLR 1 542 0 1598 241 83 40 chr1_random 4031040 4031621 -289925 + L1ME3A LINE L1 5560 6165 -5 319 336 51 30 chr1_random 4031787 4032022 -289524 - MIR SINE MIR -3 259 20 208 93 70 0 chr1_random 4032111 4032154 -289392 + (TATG)n Simple_repeat Simple_repeat 3 48 0 569 262 142 40 chr1_random 4032460 4032834 -288712 + MLT1J LTR MaLR 50 461 -50 540 211 0 26 chr1_random 4033493 4033607 -287939 - MIR SINE MIR -81 181 71 180 342 0 13 chr1_random 4033601 4033677 -287869 + MIR SINE MIR 185 259 -3 * 810 262 9 31 chr1_random 4033837 4033880 -287666 - MIR SINE MIR -32 230 188 2541 214 74 22 chr1_random 4033880 4034463 -287083 - MER90 LTR ERV1 -1 613 1 810 262 9 31 chr1_random 4034463 4034648 -286898 - MIR SINE MIR -74 188 7 348 290 89 8 chr1_random 4035155 4035279 -286267 + MIR SINE MIR 70 203 -59 549 323 82 26 chr1_random 4035526 4035758 -285788 + MIR SINE MIR 12 256 -6 687 260 35 0 chr1_random 4036184 4036353 -285193 - MIR SINE MIR -74 188 14 414 248 149 37 chr1_random 4037463 4037624 -283922 + MER5A DNA MER1_type 9 187 -2 2947 161 6 12 chr1_random 4038238 4038736 -282810 + L1MB2 LINE L1 5670 6164 -7 180 286 18 0 chr1_random 4038758 4038814 -282732 + MIR SINE MIR 90 146 -116 320 315 149 14 chr1_random 4038972 4039248 -282298 + L2 LINE L2 2048 2360 -954 592 317 12 44 chr1_random 4039263 4039512 -282034 - MLT1I LTR MaLR -71 338 98 240 226 0 65 chr1_random 4040302 4040395 -281151 + LTR67 LTR ERVL 458 544 -13 241 170 0 38 chr1_random 4040395 4040448 -281098 + MIR SINE MIR 92 142 -66 358 316 0 29 chr1_random 4040640 4040776 -280770 - MIR SINE MIR -31 231 100 1217 136 0 0 chr1_random 4040788 4040964 -280582 + AluSg/x SINE Alu 127 302 -8 259 364 10 0 chr1_random 4041572 4041671 -279875 - MIR SINE MIR -64 144 45 2487 216 78 9 chr1_random 4041722 4042249 -279297 - MLT1F1 LTR MaLR -4 563 1 347 288 75 44 chr1_random 4042295 4042521 -279025 + L2 LINE L2 2726 2958 -356 319 276 0 67 chr1_random 4042692 4042797 -278749 + L2 LINE L2 3216 3313 0 287 349 40 46 chr1_random 4042772 4042924 -278622 + L3 LINE CR1 1400 1550 -27 * 294 29 0 0 chr1_random 4043650 4043685 -277861 + (CA)n Simple_repeat Simple_repeat 1 35 0 383 165 10 29 chr1_random 4043779 4043882 -277664 + CT-rich Low_complexity Low_complexity 1 101 0 196 152 0 0 chr1_random 4044124 4044157 -277389 - MIR SINE MIR -71 137 105 2020 138 14 0 chr1_random 4044484 4044781 -276765 + AluSx SINE Alu 1 301 -11 736 294 57 17 chr1_random 4044848 4045147 -276399 - L3 LINE CR1 -73 1504 1194 553 350 16 0 chr1_random 4045222 4045416 -276130 + MIR SINE MIR 56 252 -10 2420 66 0 10 chr1_random 4045570 4045874 -275672 - AluSg SINE Alu -9 301 1 1275 140 16 0 chr1_random 4045908 4046094 -275452 - MER5A DNA MER1_type 0 189 1 333 335 57 5 chr1_random 4046144 4046338 -275208 - MIR SINE MIR -40 222 19 479 273 31 8 chr1_random 4046338 4046466 -275080 - MIR SINE MIR -115 147 17 258 234 159 55 chr1_random 4047033 4047178 -274368 + MIR SINE MIR 4 163 -99 217 319 133 42 chr1_random 4047303 4047469 -274077 + L2 LINE L2 2910 3090 -182 256 304 82 22 chr1_random 4048027 4048162 -273384 - L2 LINE L2 -319 2953 2811 245 311 76 45 chr1_random 4048715 4048847 -272699 + MIR SINE MIR 16 151 -111 941 227 94 26 chr1_random 4048877 4049210 -272336 - MLT1F LTR MaLR 0 595 247 327 324 96 7 chr1_random 4049313 4049449 -272097 - MIR SINE MIR -13 249 102 197 296 70 0 chr1_random 4049670 4049741 -271805 - MIR3 SINE MIR -52 156 81 306 280 76 38 chr1_random 4049835 4049967 -271579 + MIR SINE MIR 5 141 -121 2730 45 0 0 chr1_random 4049982 4050292 -271254 - AluY SINE Alu -1 310 1 1500 170 53 16 chr1_random 4050484 4050804 -270742 + MER33 DNA MER1_type 1 323 -1 285 118 78 0 chr1_random 4050810 4050861 -270685 + L2 LINE L2 3259 3313 0 22 0 0 0 chr1_random 4051124 4051146 -270400 + AT_rich Low_complexity Low_complexity 1 22 0 483 212 288 0 chr1_random 4051836 4051982 -269564 - MER5A DNA MER1_type -1 188 1 199 196 0 59 chr1_random 4052360 4052411 -269135 - L2 LINE L2 -1 3271 3224 1089 239 59 38 chr1_random 4052511 4052991 -268555 - L2 LINE L2 -43 3270 2766 1578 183 39 0 chr1_random 4053319 4053631 -267915 - MER33 DNA MER1_type 0 324 1 196 289 133 12 chr1_random 4053649 4053732 -267814 + L2 LINE L2 2967 3059 -213 303 238 48 12 chr1_random 4053749 4053833 -267713 + MIR SINE MIR 176 262 0 257 268 62 80 chr1_random 4053918 4054030 -267516 + L2 LINE L2 3204 3313 0 519 313 7 7 chr1_random 4054212 4054356 -267190 + MIR SINE MIR 1 144 -118 273 57 0 0 chr1_random 4054477 4054512 -267034 + (TG)n Simple_repeat Simple_repeat 2 36 0 304 356 17 46 chr1_random 4054900 4055074 -266472 + HAL1 LINE L1 1766 1934 -573 1086 163 62 0 chr1_random 4056766 4056944 -264602 - MER5A DNA MER1_type 0 189 1 486 267 249 14 chr1_random 4057212 4057417 -264129 + MIR SINE MIR 5 252 -10 327 395 51 17 chr1_random 4057441 4057632 -263914 + L2 LINE L2 2511 2721 -593 1829 172 78 59 chr1_random 4057632 4057985 -263561 + MSTB1 LTR MaLR 1 366 -66 2087 55 0 20 chr1_random 4057985 4058282 -263264 - AluY SINE Alu 0 324 33 1829 172 78 59 chr1_random 4058282 4058351 -263195 + MSTB1 LTR MaLR 366 432 0 327 395 51 17 chr1_random 4058351 4058511 -263035 + L2 LINE L2 2721 2874 -440 233 188 0 21 chr1_random 4058741 4058789 -262757 + MLT1J LTR MaLR 1 47 -464 229 333 28 0 chr1_random 4058803 4058875 -262671 + LTR67 LTR ERVL 114 187 -370 237 233 17 17 chr1_random 4059226 4059286 -262260 + LTR33A LTR ERVL 444 503 -20 2443 69 0 3 chr1_random 4059438 4059741 -261805 + AluY SINE Alu 1 302 -9 400 348 31 40 chr1_random 4060218 4060445 -261101 + MIR SINE MIR 25 249 -13 1084 136 0 0 chr1_random 4060543 4060690 -260856 + FRAM SINE Alu 5 151 -25 189 0 0 0 chr1_random 4061984 4062005 -259541 + (TTTTTG)n Simple_repeat Simple_repeat 3 23 0 2073 100 0 108 chr1_random 4062219 4062570 -258976 + AluSq SINE Alu 1 313 0 343 321 24 86 chr1_random 4062678 4062887 -258659 - MIR SINE MIR -46 216 21 1695 237 47 10 chr1_random 4062991 4063396 -258150 + L1ME LINE L1 5290 5709 -457 620 330 107 14 chr1_random 4064125 4064479 -257067 + LTR16A LTR ERVL 56 442 -8 649 283 47 9 chr1_random 4064496 4064708 -256838 + MIR SINE MIR 1 220 -42 306 320 60 0 chr1_random 4064808 4064908 -256638 + L2 LINE L2 3161 3266 -6 302 207 281 0 chr1_random 4064911 4064993 -256553 - MIR SINE MIR -109 153 49 1364 216 109 57 chr1_random 4065187 4065694 -255852 - MLT1F1 LTR MaLR 0 567 37 1834 170 170 34 chr1_random 4065694 4066105 -255441 + MLT1C LTR MaLR 1 467 0 1364 216 109 57 chr1_random 4066105 4066137 -255409 - MLT1F1 LTR MaLR -530 37 8 2163 189 64 14 chr1_random 4066137 4066577 -254969 + MLT2B1 LTR ERVL 1 462 -58 379 55 0 0 chr1_random 4066578 4066633 -254913 + L1PA14 LINE L1 6106 6160 -1 444 123 0 0 chr1_random 4066662 4066735 -254811 + (CA)n Simple_repeat Simple_repeat 2 74 0 2422 107 51 25 chr1_random 4066942 4067297 -254249 + THE1B LTR MaLR 1 364 0 461 161 17 25 chr1_random 4067857 4067975 -253571 + CT-rich Low_complexity Low_complexity 4 120 0 241 116 0 47 chr1_random 4067975 4068018 -253528 + (TCCC)n Simple_repeat Simple_repeat 3 43 0 998 16 16 0 chr1_random 4068018 4068141 -253405 + (TTTC)n Simple_repeat Simple_repeat 2 126 0 247 353 169 24 chr1_random 4068161 4068416 -253130 + L2 LINE L2 2981 3272 0 267 337 111 15 chr1_random 4068576 4068775 -252771 - L2 LINE L2 -213 3059 2842 239 279 37 134 chr1_random 4069254 4069523 -252023 + L2 LINE L2 3029 3271 -1 577 287 61 19 chr1_random 4070351 4070780 -250766 - LTR33 LTR ERVL -13 508 4 626 325 48 8 chr1_random 4071009 4071261 -250285 + MIR SINE MIR 1 262 0 4021 227 19 9 chr1_random 4071518 4072377 -249169 - MSTA-int LTR MaLR -783 868 2 2650 150 26 7 chr1_random 4072378 4072798 -248748 - MSTA LTR MaLR 0 428 1 1950 229 17 20 chr1_random 4072798 4073205 -248341 + L1M1 LINE L1 486 891 -6674 273 235 0 0 chr1_random 4073388 4073439 -248107 + ERVL LTR ERVL 4623 4673 -1091 289 260 79 24 chr1_random 4074406 4074533 -247013 + L1ME4a LINE L1 5955 6088 -33 21 36 0 0 chr1_random 4074744 4074772 -246774 + AT_rich Low_complexity Low_complexity 1 28 0 6957 16 0 0 chr1_random 4075320 4076095 -245451 - L1PA2 LINE L1 -4 6151 5377 22 0 0 0 chr1_random 4077156 4077178 -244368 + AT_rich Low_complexity Low_complexity 1 22 0 338 147 15 0 chr1_random 4077253 4077321 -244225 + (TA)n Simple_repeat Simple_repeat 2 70 0 834 320 99 48 chr1_random 4078449 4079345 -242201 - L2 LINE L2 -900 2414 1473 649 229 0 8 chr1_random 4079399 4079521 -242025 - Tigger2 DNA MER2_type 0 2718 2598 399 297 187 0 chr1_random 4079794 4079949 -241597 - L2 LINE L2 -1665 1649 1466 21 36 0 0 chr1_random 4082242 4082270 -239276 + AT_rich Low_complexity Low_complexity 1 28 0 321 306 42 28 chr1_random 4084150 4084294 -237252 + MIR SINE MIR 6 151 -111 7161 47 3 0 chr1_random 4084444 4085895 -235651 + L1PA4 LINE L1 4691 6152 -3 37 39 0 0 chr1_random 4087507 4087558 -233988 + AT_rich Low_complexity Low_complexity 1 51 0 5660 162 49 9 chr1_random 4087569 4089436 -232110 - L1MA4 LINE L1 -20 6280 4332 30 27 0 0 chr1_random 4089440 4089477 -232069 + AT_rich Low_complexity Low_complexity 1 37 0 467 339 79 55 chr1_random 4090039 4090443 -231103 + L1MC3 LINE L1 152 565 -5480 1364 248 124 45 chr1_random 4090562 4091587 -229959 + L1MC3 LINE L1 555 1659 -4851 1344 221 72 23 chr1_random 4091588 4091840 -229706 + MLT1A1 LTR MaLR 1 276 -89 2108 129 0 0 chr1_random 4091840 4092142 -229404 - AluSx SINE Alu -10 302 1 1344 221 72 23 chr1_random 4092142 4092237 -229309 + MLT1A1 LTR MaLR 276 365 0 1161 224 240 17 chr1_random 4092249 4092937 -228609 + L1MC3 LINE L1 1701 2541 -4023 226 154 0 0 chr1_random 4093064 4093103 -228443 + L1MC3 LINE L1 2636 2674 -3890 24 67 0 0 chr1_random 4093103 4093148 -228398 + AT_rich Low_complexity Low_complexity 1 45 0 1562 277 34 2 chr1_random 4093153 4093676 -227870 + L1MC3 LINE L1 2687 3226 -3338 2766 240 81 43 chr1_random 4093676 4094873 -226673 + L1MC3 LINE L1 4280 5522 -1042 1418 172 97 22 chr1_random 4094881 4095200 -226346 - MER61A LTR ERV1 0 343 1 23428 115 30 15 chr1_random 4095200 4098906 -222640 - MER61A-int LTR ERV1 -1 5216 1655 2356 193 45 32 chr1_random 4098918 4099478 -222068 - MER61A-int LTR ERV1 -4650 567 1 1578 151 77 21 chr1_random 4099478 4099803 -221743 - MER61A LTR ERV1 0 343 1 8009 207 27 102 chr1_random 4099874 4099958 -221588 + L1MC3 LINE L1 5632 5721 -2482 2088 142 0 6 chr1_random 4099958 4100269 -221277 + AluSg SINE Alu 1 309 -1 8009 207 27 102 chr1_random 4100269 4102923 -218623 + L1MC3 LINE L1 5721 8187 -16 22 35 0 0 chr1_random 4103144 4103173 -218373 + AT_rich Low_complexity Low_complexity 1 29 0 22 35 0 0 chr1_random 4103661 4103690 -217856 + AT_rich Low_complexity Low_complexity 1 29 0 29 47 0 0 chr1_random 4104093 4104136 -217410 + AT_rich Low_complexity Low_complexity 1 43 0 24 0 0 0 chr1_random 4104283 4104307 -217239 + AT_rich Low_complexity Low_complexity 1 24 0 1401 297 32 93 chr1_random 4104338 4105313 -216233 - L2 LINE L2 -7 3306 2395 851 184 19 6 chr1_random 4105341 4105499 -216047 + L1MCa LINE L1 20 179 -6247 2876 162 95 27 chr1_random 4105604 4106319 -215227 + L1MCa LINE L1 795 1558 -4868 1655 296 49 6 chr1_random 4106319 4106869 -214677 - L2 LINE L2 -925 2389 1816 860 295 156 11 chr1_random 4106947 4107384 -214162 - L2 LINE L2 -2442 872 373 2035 128 7 0 chr1_random 4107823 4108113 -213433 + AluSp SINE Alu 1 292 -21 2058 114 11 23 chr1_random 4108355 4108705 -212841 - MER11A LTR ERVK 0 1266 921 338 297 41 18 chr1_random 4108990 4109292 -212254 - L1MC/D LINE L1 -692 5474 5197 5633 78 29 7 chr1_random 4110220 4110993 -210553 + SVA Other Other 13 802 -584 287 252 24 122 chr1_random 4111629 4111752 -209794 - L2 LINE L2 -19 3294 3184 195 42 0 0 chr1_random 4111758 4111782 -209764 + (TAAA)n Simple_repeat Simple_repeat 2 25 0 1100 80 31 0 chr1_random 4112418 4112581 -208965 - L1MA3 LINE L1 0 6305 6138 307 384 35 9 chr1_random 4112996 4113225 -208321 - L1ME3 LINE L1 -281 5881 5647 1409 187 29 54 chr1_random 4113461 4113776 -207770 + MER68 LTR ERV1 1 307 -255 29 0 0 0 chr1_random 4113947 4113976 -207570 + AT_rich Low_complexity Low_complexity 1 29 0 378 0 0 0 chr1_random 4114318 4114360 -207186 + (CA)n Simple_repeat Simple_repeat 2 43 0 2173 48 48 31 chr1_random 4115900 4116192 -205354 - AluY SINE Alu -14 297 1 2122 45 4 0 chr1_random 4116792 4117061 -204485 + L1PA4 LINE L1 5886 6155 0 302 296 23 0 chr1_random 4117876 4117964 -203582 - L1MC4 LINE L1 -1339 6703 6614 225 336 20 7 chr1_random 4118523 4118669 -202877 - HAL1 LINE L1 -832 1675 1528 4313 217 15 12 chr1_random 4119089 4120267 -201279 - L1MC2 LINE L1 -186 6158 4978 1411 155 42 6 chr1_random 4120275 4120604 -200942 - MSTC LTR MaLR 0 428 2 2837 280 127 53 chr1_random 4120605 4122103 -199443 - MSTC-int LTR MaLR 0 1651 43 2144 176 25 37 chr1_random 4122130 4122563 -198983 - MSTC LTR MaLR 0 428 1 1579 264 58 26 chr1_random 4122598 4122692 -198854 - L1MC2 LINE L1 -1204 4942 4852 2061 211 14 5 chr1_random 4122692 4123110 -198436 - MSTB LTR MaLR -4 422 1 1579 264 58 26 chr1_random 4123110 4123618 -197928 - L1MC2 LINE L1 -1294 4852 4321 2594 242 7 0 chr1_random 4123643 4124188 -197358 + L1MA4 LINE L1 1 549 -6660 8943 236 36 23 chr1_random 4124200 4128663 -192883 + L1MA4 LINE L1 1229 5753 -1455 16595 58 9 1 chr1_random 4128672 4131603 -189943 - L1PA4 LINE L1 -4 6151 3200 6668 57 0 1 chr1_random 4131604 4132465 -189081 + L1P LINE L1 1734 2593 -3553 5026 185 32 39 chr1_random 4132463 4133576 -187970 + L1MA4 LINE L1 5738 6847 -515 * 2069 117 0 39 chr1_random 4133576 4133883 -187663 + AluSg SINE Alu 4 298 -12 5026 185 32 39 chr1_random 4133883 4134390 -187156 + L1MA4 LINE L1 6847 7356 -6 1293 237 61 71 chr1_random 4134459 4134868 -186678 + MLT1E2 LTR MaLR 222 626 0 207 93 23 47 chr1_random 4135057 4135100 -186446 + (TAAA)n Simple_repeat Simple_repeat 4 45 0 1956 179 43 26 chr1_random 4135603 4136147 -185399 - MLT2A2 LTR ERVL -1 553 1 2048 242 53 33 chr1_random 4136395 4136550 -184996 + MER82 DNA MER2_type 1 151 -502 2059 87 25 4 chr1_random 4136550 4136850 -184696 + AluY SINE Alu 1 306 0 2048 242 53 33 chr1_random 4136850 4137333 -184213 + MER82 DNA MER2_type 151 653 0 324 239 9 28 chr1_random 4137505 4137614 -183932 + L1ME LINE L1 5705 5811 -310 476 354 47 24 chr1_random 4138151 4138405 -183141 - MIR SINE MIR -1 261 2 260 315 0 0 chr1_random 4139450 4139539 -182007 + L1MC4 LINE L1 6614 6702 -1340 237 244 47 12 chr1_random 4139512 4139598 -181948 - L1MC4 LINE L1 -1339 6703 6615 * 201 74 0 0 chr1_random 4140002 4140029 -181517 + (A)n Simple_repeat Simple_repeat 1 27 0 458 178 40 20 chr1_random 4140135 4140236 -181310 + Tigger5 DNA MER2_type 1 103 -2220 235 268 0 0 chr1_random 4140313 4140384 -181162 + L1M4 LINE L1 2260 2330 -3816 24 0 0 0 chr1_random 4140384 4140408 -181138 + AT_rich Low_complexity Low_complexity 1 24 0 186 71 0 0 chr1_random 4140710 4140738 -180808 + (CTG)n Simple_repeat Simple_repeat 2 29 0 526 255 84 42 chr1_random 4141461 4141603 -179943 + L1MC4a LINE L1 5678 5813 -1995 1648 163 14 0 chr1_random 4141603 4141879 -179667 + AluJb SINE Alu 7 286 -26 526 255 84 42 chr1_random 4141879 4141999 -179547 + L1MC4a LINE L1 5813 5951 -1857 1945 111 61 0 chr1_random 4142045 4142324 -179222 + AluSq SINE Alu 1 296 -17 495 26 53 0 chr1_random 4142324 4142400 -179146 + (TAGA)n Simple_repeat Simple_repeat 2 81 0 301 283 123 71 chr1_random 4142527 4142796 -178750 + L1MC4a LINE L1 6196 6478 -1330 2034 195 39 12 chr1_random 4143070 4143481 -178065 + MSTB LTR MaLR 1 422 -4 216 0 0 0 chr1_random 4143544 4143568 -177978 + (A)n Simple_repeat Simple_repeat 1 24 0 235 263 117 15 chr1_random 4143572 4143709 -177837 + L1MC4 LINE L1 6918 7068 -974 21 36 0 0 chr1_random 4145152 4145180 -176366 + AT_rich Low_complexity Low_complexity 1 28 0 486 273 29 12 chr1_random 4145492 4145664 -175882 - MER5B DNA MER1_type -2 176 2 1923 138 29 52 chr1_random 4146428 4146812 -174734 - THE1C LTR MaLR 0 375 1 21 36 0 0 chr1_random 4146826 4146854 -174692 + AT_rich Low_complexity Low_complexity 1 28 0 29865 74 4 1 chr1_random 4146909 4150897 -170649 + L1P LINE L1 22 4024 -2122 623 82 82 10 chr1_random 4151000 4151098 -170448 - MER11A LTR ERVK -1161 105 1 345 255 120 79 chr1_random 4151180 4151396 -170150 - L1ME3A LINE L1 -36 6134 5910 1616 251 114 60 chr1_random 4151408 4152022 -169524 + MLT1E1 LTR MaLR 6 652 -2 1085 232 95 63 chr1_random 4152023 4152484 -169062 - L1ME3A LINE L1 -258 5912 5437 483 163 0 35 chr1_random 4153584 4153670 -167876 - L1P LINE L1 -2045 4101 4019 922 185 73 106 chr1_random 4153671 4153973 -167573 - L1MD2 LINE L1 -56 6303 6012 * 1015 206 8 16 chr1_random 4153969 4154217 -167329 - L1MD2 LINE L1 -669 5573 5328 728 291 21 21 chr1_random 4154230 4154570 -166976 - L1MD2 LINE L1 -934 5212 4873 7730 159 12 53 chr1_random 4154572 4156069 -165477 + MSTB-int LTR MaLR 139 1573 -7 1841 174 122 10 chr1_random 4156076 4156461 -165085 + MSTA LTR MaLR 1 428 0 22 0 0 0 chr1_random 4156718 4156740 -164806 + AT_rich Low_complexity Low_complexity 1 22 0 240 218 18 45 chr1_random 4156889 4156999 -164547 + (TA)n Simple_repeat Simple_repeat 1 107 0 543 314 59 4 chr1_random 4157003 4157242 -164304 - MER46C DNA MER2_type -83 255 4 22 35 0 0 chr1_random 4157295 4157324 -164222 + AT_rich Low_complexity Low_complexity 1 29 0 1858 171 15 21 chr1_random 4158361 4158700 -162846 - MER1B DNA MER1_type 0 337 1 213 39 0 0 chr1_random 4158987 4159013 -162533 + (GA)n Simple_repeat Simple_repeat 1 26 0 1647 278 79 3 chr1_random 4159679 4160398 -161148 + L1M4 LINE L1 4405 5178 -968 249 108 0 0 chr1_random 4161373 4161410 -160136 - MIR SINE MIR -123 139 103 187 172 0 47 chr1_random 4163358 4163422 -158124 + (TAA)n Simple_repeat Simple_repeat 1 61 0 1510 162 97 29 chr1_random 4163647 4163998 -157548 - THE1C LTR MaLR 0 375 1 8852 145 26 39 chr1_random 4163998 4165596 -155950 - THE1C-int LTR MaLR 0 1580 3 1696 154 76 22 chr1_random 4165598 4165954 -155592 - THE1C LTR MaLR 0 375 1 5634 191 11 11 chr1_random 4166857 4167984 -153562 - L1MC1 LINE L1 -7 6606 5480 9312 214 82 18 chr1_random 4168003 4172518 -149028 - L1MC1 LINE L1 -1594 4832 30 23 68 0 0 chr1_random 4173171 4173215 -148331 + AT_rich Low_complexity Low_complexity 1 44 0 24 85 0 0 chr1_random 4173424 4173483 -148063 + AT_rich Low_complexity Low_complexity 1 59 0 2580 36 7 0 chr1_random 4175269 4175578 -145968 - AluY SINE Alu 0 311 1 254 322 56 0 chr1_random 4175608 4175698 -145848 - MIR3 SINE MIR 0 208 114 2144 200 21 26 chr1_random 4175889 4176358 -145188 - MLT1C LTR MaLR 0 467 1 480 232 43 63 chr1_random 4177823 4178030 -143516 + AluSg/x SINE Alu 88 290 -22 21 0 0 0 chr1_random 4178223 4178244 -143302 + AT_rich Low_complexity Low_complexity 1 21 0 344 314 69 53 chr1_random 4179105 4179258 -142288 + MIR SINE MIR 2 160 -102 2227 67 7 10 chr1_random 4179258 4179555 -141991 + AluY SINE Alu 1 296 -15 344 314 69 53 chr1_random 4179555 4179589 -141957 + MIR SINE MIR 160 192 -70 216 167 0 0 chr1_random 4179743 4179779 -141767 + GA-rich Low_complexity Low_complexity 3 38 0 1248 55 0 17 chr1_random 4180236 4180417 -141129 + (TTTC)n Simple_repeat Simple_repeat 1 178 0 851 97 46 17 chr1_random 4180435 4180610 -140936 + CT-rich Low_complexity Low_complexity 1 180 0 249 108 0 0 chr1_random 4180609 4180646 -140900 + (TCCC)n Simple_repeat Simple_repeat 2 38 0 * 207 292 146 31 chr1_random 4181378 4181508 -140038 + L2 LINE L2 3168 3312 -1 207 299 26 0 chr1_random 4181494 4181571 -139975 - MIR SINE MIR -64 198 120 241 263 12 88 chr1_random 4181628 4181708 -139838 - L2 LINE L2 -61 3211 3138 374 338 64 5 chr1_random 4181864 4182068 -139478 - L2 LINE L2 -167 3146 2931 2856 6 0 0 chr1_random 4183630 4183944 -137602 + AluYb8 SINE Alu 1 314 -4 201 94 0 0 chr1_random 4184581 4184613 -136933 + (CAAAA)n Simple_repeat Simple_repeat 2 33 0 192 268 0 0 chr1_random 4185152 4185193 -136353 + L2 LINE L2 3265 3305 -8 252 0 0 0 chr1_random 4187544 4187572 -133974 + (CA)n Simple_repeat Simple_repeat 1 28 0 549 279 75 0 chr1_random 4188441 4188588 -132958 + MER5B DNA MER1_type 2 159 -19 201 254 0 0 chr1_random 4188652 4188711 -132835 + (TA)n Simple_repeat Simple_repeat 1 59 0 2189 65 36 0 chr1_random 4188724 4189001 -132545 + AluY SINE Alu 2 288 -23 22 0 0 0 chr1_random 4189918 4189940 -131606 + AT_rich Low_complexity Low_complexity 1 22 0 309 273 40 30 chr1_random 4190337 4190436 -131110 - MER5A DNA MER1_type -80 109 10 218 105 26 0 chr1_random 4190952 4190990 -130556 + (TA)n Simple_repeat Simple_repeat 2 40 0 1897 139 147 8 chr1_random 4191121 4191495 -130051 - MSTA LTR MaLR -2 426 1 303 341 0 0 chr1_random 4191534 4191616 -129930 + MIR3 SINE MIR 112 193 -15 3247 117 48 6 chr1_random 4191623 4191707 -129839 + L1PB1 LINE L1 5210 5289 -862 198 0 0 0 chr1_random 4191707 4191729 -129817 + (CAAA)n Simple_repeat Simple_repeat 2 23 0 3247 117 48 6 chr1_random 4191729 4192204 -129342 + L1PB1 LINE L1 5289 5791 -360 451 171 13 20 chr1_random 4192204 4192356 -129190 + (TA)n Simple_repeat Simple_repeat 2 152 0 2324 129 0 3 chr1_random 4192368 4192731 -128815 + L1PB1 LINE L1 5782 6143 -8 345 236 84 62 chr1_random 4193480 4193658 -127888 - MIR SINE MIR -6 256 75 4555 23 0 21 chr1_random 4193994 4194542 -127004 + SVA Other Other 874 1386 0 24 0 0 0 chr1_random 4194745 4194769 -126777 + AT_rich Low_complexity Low_complexity 1 24 0 238 172 0 35 chr1_random 4196436 4196494 -125052 + A-rich Low_complexity Low_complexity 3 58 0 182 91 30 0 chr1_random 4196614 4196647 -124899 + A-rich Low_complexity Low_complexity 3 36 0 1038 222 18 4 chr1_random 4196733 4196958 -124588 - MLT1D LTR MaLR -275 230 3 671 273 243 52 chr1_random 4196968 4197016 -124530 - L2 LINE L2 -974 2340 2302 2184 109 0 6 chr1_random 4197016 4197327 -124219 + AluSc SINE Alu 1 309 0 671 273 243 52 chr1_random 4197327 4198100 -123446 - L2 LINE L2 -1012 2302 1362 395 208 62 31 chr1_random 4198923 4199019 -122527 - LTR52 LTR ERVL -274 147 49 17356 166 23 68 chr1_random 4199028 4202235 -119311 + L1MA2 LINE L1 17 3367 -4198 351 0 0 0 chr1_random 4202235 4202274 -119272 + (TTA)n Simple_repeat Simple_repeat 2 40 0 17356 166 23 68 chr1_random 4202274 4202300 -119246 + L1MA2 LINE L1 3367 3393 -4172 186 43 0 0 chr1_random 4202300 4202323 -119223 + (TG)n Simple_repeat Simple_repeat 2 24 0 17356 166 23 68 chr1_random 4202323 4202525 -119021 + L1MA2 LINE L1 3393 3280 -4285 2404 94 23 3 chr1_random 4202525 4202877 -118669 + L1PA10 LINE L1 5794 6152 -16 17356 166 23 68 chr1_random 4202877 4203112 -118434 + L1MA2 LINE L1 3279 3523 -4042 8823 174 14 19 chr1_random 4203112 4203876 -117670 + L1MA2 LINE L1 4208 4975 -2748 2284 81 0 10 chr1_random 4203876 4204173 -117373 + AluY SINE Alu 3 296 -15 8823 174 14 19 chr1_random 4204173 4206661 -114885 + L1MA2 LINE L1 4975 7671 -52 901 89 16 0 chr1_random 4206664 4206788 -114758 + AluSp SINE Alu 1 126 -187 5336 30 15 22 chr1_random 4206788 4207460 -114086 + L1HS LINE L1 5483 6149 -6 216 0 0 0 chr1_random 4207517 4207541 -114005 + (TAAAA)n Simple_repeat Simple_repeat 2 25 0 2001 36 8 4 chr1_random 4207561 4207812 -113734 + L1PA5 LINE L1 5770 6021 -133 1374 74 0 11 chr1_random 4207974 4208164 -113382 + L1PA5 LINE L1 5965 6152 -2 906 130 0 0 chr1_random 4208169 4208292 -113254 + AluSg/x SINE Alu 128 250 -60 192 40 0 0 chr1_random 4208292 4208317 -113229 + (TAGA)n Simple_repeat Simple_repeat 2 26 0 1059 147 0 0 chr1_random 4208326 4208573 -112973 + (TA)n Simple_repeat Simple_repeat 1 247 0 3005 116 2 14 chr1_random 4208573 4209013 -112533 + THE1B-int LTR MaLR 1146 1580 0 1972 159 37 6 chr1_random 4209013 4209366 -112180 + THE1B LTR MaLR 1 364 0 1058 289 32 71 chr1_random 4209413 4210313 -111233 - L1MEc LINE L1 -3987 2409 1545 26 0 0 0 chr1_random 4210490 4210516 -111030 + AT_rich Low_complexity Low_complexity 1 26 0 2218 135 19 19 chr1_random 4210599 4210963 -110583 - THE1B LTR MaLR 0 364 1 2848 116 22 0 chr1_random 4211937 4212341 -109205 + MLT2A2 LTR ERVL 1 413 -40 315 139 76 7 chr1_random 4212346 4212490 -109056 + (TA)n Simple_repeat Simple_repeat 2 155 0 642 97 97 0 chr1_random 4212506 4212806 -108740 + (TA)n Simple_repeat Simple_repeat 1 329 0 1479 264 115 19 chr1_random 4212898 4213466 -108080 - MLT1G LTR MaLR 0 590 2 480 174 0 0 chr1_random 4213618 4213704 -107842 + AluSc SINE Alu 212 297 -12 682 335 133 30 chr1_random 4213705 4214366 -107180 - L2 LINE L2 -324 2989 2262 21 57 0 0 chr1_random 4215093 4215128 -106418 + AT_rich Low_complexity Low_complexity 1 35 0 506 177 105 157 chr1_random 4215245 4215493 -106053 + MIR SINE MIR 7 241 -21 388 291 138 16 chr1_random 4215876 4216065 -105481 - MIR SINE MIR -27 235 24 2215 112 0 0 chr1_random 4216324 4216611 -104935 + AluSx SINE Alu 4 290 -22 998 200 85 107 chr1_random 4216642 4217052 -104494 - MER57A LTR ERV1 0 403 3 21 0 0 0 chr1_random 4217063 4217084 -104462 + AT_rich Low_complexity Low_complexity 1 21 0 319 350 77 0 chr1_random 4217362 4217505 -104041 - MIR SINE MIR -108 154 1 684 210 32 73 chr1_random 4219195 4219261 -102285 + MER2 DNA MER2_type 1 68 -277 2046 116 7 3 chr1_random 4219261 4219563 -101983 + AluSp SINE Alu 1 303 -10 684 210 32 73 chr1_random 4219563 4219715 -101831 + MER2 DNA MER2_type 68 210 -135 1702 53 0 0 chr1_random 4219985 4220193 -101353 + AluY SINE Alu 103 310 -1 226 237 13 26 chr1_random 4220458 4220534 -101012 + MLT1J LTR MaLR 413 487 -24 295 265 12 12 chr1_random 4220535 4220618 -100928 + MIR SINE MIR 176 258 -4 1824 262 32 52 chr1_random 4220635 4221192 -100354 - MLT2B3 LTR ERVL -8 546 1 31 26 0 0 chr1_random 4221469 4221507 -100039 + AT_rich Low_complexity Low_complexity 1 38 0 1994 115 0 14 chr1_random 4221510 4221798 -99748 - AluSg SINE Alu -26 284 1 23 68 0 0 chr1_random 4221924 4221968 -99578 + AT_rich Low_complexity Low_complexity 1 44 0 21 0 0 0 chr1_random 4222101 4222122 -99424 + AT_rich Low_complexity Low_complexity 1 21 0 264 239 86 13 chr1_random 4222444 4222666 -98880 - MER5C DNA MER1_type -2 322 26 2348 73 0 13 chr1_random 4223786 4224100 -97446 - AluY SINE Alu -1 310 1 231 235 0 0 chr1_random 4224211 4224262 -97284 - L2 LINE L2 -1 3312 3262 390 259 63 44 chr1_random 4224892 4225050 -96496 + L2 LINE L2 1739 1899 -1415 215 151 38 19 chr1_random 4225047 4225100 -96446 - L2 LINE L2 -1663 1651 1598 * 206 349 61 0 chr1_random 4225085 4225151 -96395 + L3b LINE CR1 1409 1478 -105 * 21 0 0 0 chr1_random 4225673 4225694 -95852 + AT_rich Low_complexity Low_complexity 1 21 0 414 0 0 0 chr1_random 4226904 4226950 -94596 + (TG)n Simple_repeat Simple_repeat 2 47 0 238 179 179 0 chr1_random 4226953 4227020 -94526 - L1MC4 LINE L1 -909 7133 7055 517 302 55 8 chr1_random 4227023 4227278 -94268 - L1MC/D LINE L1 -2231 5577 5311 345 290 127 30 chr1_random 4227621 4227990 -93556 - L1MC/D LINE L1 -1713 4433 4029 22 88 0 0 chr1_random 4228035 4228092 -93454 + AT_rich Low_complexity Low_complexity 1 57 0 267 283 66 41 chr1_random 4228092 4228336 -93210 - L1MC/D LINE L1 -2982 3164 2915 22 35 0 0 chr1_random 4228336 4228365 -93181 + AT_rich Low_complexity Low_complexity 1 29 0 419 345 92 19 chr1_random 4228414 4228825 -92721 - L1MC/D LINE L1 -3320 2826 2386 1214 215 23 8 chr1_random 4228845 4229101 -92445 + MLT1E1 LTR MaLR 1 260 -394 549 258 162 45 chr1_random 4229130 4229379 -92167 + MLT1E3 LTR MaLR 284 573 -51 4379 205 57 41 chr1_random 4229382 4231362 -90184 - L1MB4 LINE L1 -6 6174 4167 1625 178 13 45 chr1_random 4231362 4231671 -89875 - AluJb SINE Alu -13 299 1 4379 205 57 41 chr1_random 4231671 4231820 -89726 - L1MB4 LINE L1 -2013 4167 4022 238 250 0 0 chr1_random 4232377 4232429 -89117 + (CA)n Simple_repeat Simple_repeat 1 52 0 466 308 209 6 chr1_random 4232863 4233045 -88501 + MIR SINE MIR 19 237 -25 1187 310 41 17 chr1_random 4233071 4233845 -87701 - ERVL LTR ERVL -3579 2185 1347 730 291 90 46 chr1_random 4233893 4234419 -87127 - ERVL LTR ERVL -4295 1190 764 744 307 193 8 chr1_random 4235078 4235596 -85950 - MLT2F LTR ERVL -13 650 37 2137 68 0 29 chr1_random 4235814 4236095 -85451 + AluY SINE Alu 1 273 -38 22 35 0 0 chr1_random 4236130 4236159 -85387 + AT_rich Low_complexity Low_complexity 1 29 0 1852 163 3 0 chr1_random 4236459 4236773 -84773 - AluSx SINE Alu 0 315 1 2154 173 31 28 chr1_random 4237094 4237641 -83905 - MLT2A2 LTR ERVL 0 554 3 263 376 85 14 chr1_random 4238289 4238430 -83116 + L2 LINE L2 3122 3272 0 1320 182 46 24 chr1_random 4238731 4239060 -82486 - L1MCa LINE L1 -4996 1430 1095 401 182 35 56 chr1_random 4239099 4239267 -82279 + MLT1D LTR MaLR 78 299 -206 1027 204 41 109 chr1_random 4239285 4239751 -81795 - LTR8A LTR ERV1 -7 720 287 707 214 14 149 chr1_random 4239842 4240137 -81409 - LTR8A LTR ERV1 -439 288 34 917 191 74 5 chr1_random 4240153 4240342 -81204 + MLT1D LTR MaLR 304 505 0 317 282 70 61 chr1_random 4240636 4241111 -80435 + L1M4 LINE L1 2809 3287 -2859 534 320 92 7 chr1_random 4241346 4241373 -80173 - LTR16C LTR ERVL -9 482 459 3741 107 20 2 chr1_random 4241373 4241917 -79629 + MER41A LTR ERV1 1 554 0 534 320 92 7 chr1_random 4241917 4242161 -79385 - LTR16C LTR ERVL -32 459 188 340 133 205 24 chr1_random 4243185 4243268 -78278 + MER4A LTR ERV1 1 98 -566 * 1662 123 152 103 chr1_random 4243264 4243454 -78092 + MER4A LTR ERV1 257 436 -228 1773 153 24 20 chr1_random 4243454 4243748 -77798 - AluSx SINE Alu -17 295 1 1662 123 152 103 chr1_random 4243748 4243946 -77600 + MER4A LTR ERV1 436 664 0 194 91 30 0 chr1_random 4244763 4244796 -76750 + (TA)n Simple_repeat Simple_repeat 2 35 0 190 81 54 0 chr1_random 4244836 4244873 -76673 + (TA)n Simple_repeat Simple_repeat 2 40 0 186 207 0 0 chr1_random 4244975 4245033 -76513 + (TA)n Simple_repeat Simple_repeat 2 59 0 1728 258 35 20 chr1_random 4245134 4245673 -75873 - L1ME2 LINE L1 -133 6031 5485 198 0 0 0 chr1_random 4245675 4245697 -75849 + (TTTA)n Simple_repeat Simple_repeat 3 24 0 1792 109 38 0 chr1_random 4245702 4245968 -75578 - AluY SINE Alu -35 276 1 200 250 0 0 chr1_random 4245994 4246034 -75512 - L2 LINE L2 -5 3308 3269 280 281 10 0 chr1_random 4246054 4246150 -75396 + L1MC4 LINE L1 6606 6702 -1340 1213 271 93 10 chr1_random 4246329 4247208 -74338 - L1ME2 LINE L1 -684 5480 4513 1308 179 24 92 chr1_random 4247455 4247791 -73755 - AluSp SINE Alu 0 313 1 232 176 0 0 chr1_random 4247858 4247909 -73637 - LTR66 LTR ERVL -171 439 389 1531 292 38 18 chr1_random 4247911 4248568 -72978 - L1ME2 LINE L1 -1849 4297 3628 671 199 168 15 chr1_random 4249164 4249252 -72294 + MLT2C1 LTR ERVL 1 74 -323 532 26 53 0 chr1_random 4249252 4249328 -72218 + (TATATG)n Simple_repeat Simple_repeat 1 80 0 671 199 168 15 chr1_random 4249328 4249435 -72111 + MLT2C1 LTR ERVL 74 226 -171 276 125 0 21 chr1_random 4249481 4249529 -72017 + MLT2B2 LTR ERVL 469 515 0 21 0 0 0 chr1_random 4250919 4250940 -70606 + AT_rich Low_complexity Low_complexity 1 21 0 26 30 0 0 chr1_random 4251886 4251919 -69627 + AT_rich Low_complexity Low_complexity 1 33 0 23 33 0 0 chr1_random 4252137 4252167 -69379 + AT_rich Low_complexity Low_complexity 1 30 0 234 333 42 67 chr1_random 4252759 4252879 -68667 + MIR SINE MIR 24 140 -68 983 245 68 39 chr1_random 4253226 4253324 -68222 + MLT1E3 LTR MaLR 306 400 -224 342 0 0 0 chr1_random 4253324 4253362 -68184 + (CA)n Simple_repeat Simple_repeat 1 38 0 983 245 68 39 chr1_random 4253362 4253573 -67973 + MLT1E3 LTR MaLR 400 624 0 416 314 154 6 chr1_random 4253834 4253990 -67556 + MER5A DNA MER1_type 4 182 -7 199 372 44 9 chr1_random 4254383 4254496 -67050 + MER5A DNA MER1_type 72 188 -1 774 211 0 0 chr1_random 4255760 4255907 -65639 + MLT2B1 LTR ERVL 1 147 -373 2052 187 36 29 chr1_random 4255913 4256330 -65216 + MSTB1 LTR MaLR 6 425 -7 852 245 63 65 chr1_random 4256338 4256659 -64887 + MLT2B1 LTR ERVL 145 519 -1 233 56 0 28 chr1_random 4256919 4256955 -64591 + (CA)n Simple_repeat Simple_repeat 2 36 0 182 280 0 0 chr1_random 4257931 4257981 -63565 - L2 LINE L2 0 3313 3264 865 128 54 20 chr1_random 4258451 4258599 -62947 - FRAM SINE Alu -20 156 4 233 331 25 25 chr1_random 4258710 4258831 -62715 - MIR SINE MIR -89 173 53 2443 62 0 0 chr1_random 4259066 4259370 -62176 - AluY SINE Alu -7 304 1 511 258 118 34 chr1_random 4259433 4259611 -61935 - MIR SINE MIR 0 262 70 21 36 0 0 chr1_random 4259902 4259930 -61616 + AT_rich Low_complexity Low_complexity 1 28 0 283 278 51 80 chr1_random 4260314 4260490 -61056 - L1MCc LINE L1 -5377 1046 876 288 305 42 42 chr1_random 4262280 4262375 -59171 + MIR SINE MIR 20 114 -148 282 375 15 15 chr1_random 4263108 4263244 -58302 - L2 LINE L2 -5 3267 3132 239 143 24 0 chr1_random 4263989 4264031 -57515 + MIR SINE MIR 110 152 -110 224 324 14 14 chr1_random 4266013 4266084 -55462 + MIR SINE MIR 66 136 -72 1615 169 3 45 chr1_random 4266998 4267311 -54235 + AluJo SINE Alu 1 300 -12 249 258 61 0 chr1_random 4269002 4269068 -52478 - MIR SINE MIR -162 100 31 344 315 23 15 chr1_random 4269079 4269209 -52337 + MIR SINE MIR 106 236 -26 188 33 0 33 chr1_random 4269316 4269346 -52200 + (TTTTA)n Simple_repeat Simple_repeat 4 32 0 4374 72 18 0 chr1_random 4269346 4269919 -51627 - L1PA7 LINE L1 -16 6138 5556 24 0 0 0 chr1_random 4270176 4270200 -51346 + AT_rich Low_complexity Low_complexity 1 24 0 26 74 0 0 chr1_random 4270229 4270283 -51263 + AT_rich Low_complexity Low_complexity 1 54 0 981 106 0 0 chr1_random 4273391 4273523 -48023 - AluSg/x SINE Alu -13 299 168 182 118 0 29 chr1_random 4274005 4274039 -47507 - MIR SINE MIR -94 168 136 273 286 199 25 chr1_random 4274170 4274366 -47180 - L3 LINE CR1 -291 1286 1057 25 65 0 0 chr1_random 4276043 4276089 -45457 + AT_rich Low_complexity Low_complexity 1 46 0 1711 155 0 44 chr1_random 4276171 4276494 -45052 - AluSx SINE Alu 0 312 3 219 344 26 46 chr1_random 4276651 4276802 -44744 + MER5B DNA MER1_type 2 149 -29 21 0 0 0 chr1_random 4277664 4277685 -43861 + AT_rich Low_complexity Low_complexity 1 21 0 391 362 72 45 chr1_random 4278245 4278646 -42900 - MLT1J LTR MaLR -98 413 2 7004 186 50 12 chr1_random 4278839 4280293 -41253 + L1MB3 LINE L1 17 1526 -4858 3524 217 73 18 chr1_random 4280305 4281533 -40013 + L1MB3 LINE L1 5128 6419 0 24 0 0 0 chr1_random 4282324 4282348 -39198 + AT_rich Low_complexity Low_complexity 1 24 0 272 277 108 18 chr1_random 4283399 4283565 -37981 - HAL1 LINE L1 -25 2482 2302 665 256 149 43 chr1_random 4283646 4284115 -37431 - HAL1 LINE L1 -322 2185 1667 180 0 0 0 chr1_random 4284116 4284136 -37410 + (A)n Simple_repeat Simple_repeat 1 20 0 282 319 22 49 chr1_random 4284178 4284363 -37183 - HAL1 LINE L1 -864 1643 1464 605 335 13 18 chr1_random 4284431 4284655 -36891 - MIR SINE MIR -38 224 2 2011 144 0 25 chr1_random 4284812 4285131 -36415 - AluSx SINE Alu -1 311 1 2456 146 9 7 chr1_random 4285313 4285746 -35800 - L1MA4A LINE L1 -4 7361 6928 343 111 3 18 chr1_random 4285753 4285819 -35727 + AluJb SINE Alu 85 138 -164 277 236 0 42 chr1_random 4285823 4285895 -35651 + AluS SINE Alu 233 301 0 516 173 0 45 chr1_random 4285899 4286009 -35537 - L1MA4A LINE L1 -430 6935 6831 12125 220 27 33 chr1_random 4286028 4288145 -33401 - L1PB2 LINE L1 -3 6864 4736 2045 128 50 34 chr1_random 4288145 4288503 -33043 - THE1B LTR MaLR 0 364 1 11204 113 8 1 chr1_random 4288503 4290071 -31475 - THE1B-int LTR MaLR 0 1580 1 1837 164 42 31 chr1_random 4290071 4290431 -31115 - THE1B LTR MaLR 0 364 1 12125 220 27 33 chr1_random 4290431 4292134 -29412 - L1PB2 LINE L1 -2129 4738 3027 443 69 14 0 chr1_random 4292134 4292206 -29340 + (TA)n Simple_repeat Simple_repeat 2 74 0 1587 165 0 0 chr1_random 4292206 4292443 -29103 - AluSx SINE Alu -34 278 42 503 97 14 0 chr1_random 4292443 4292515 -29031 - AluS SINE Alu -240 73 1 12125 220 27 33 chr1_random 4292515 4296430 -25116 - L1PB2 LINE L1 -3837 3030 3 2031 119 7 7 chr1_random 4296449 4296742 -24804 - AluSc SINE Alu -16 293 1 6957 228 78 22 chr1_random 4296742 4299921 -21625 - L1MA4A LINE L1 -524 6841 3433 5577 235 33 55 chr1_random 4299910 4301526 -20020 - L1MA4A LINE L1 -4688 2521 942 * 413 167 26 0 chr1_random 4301605 4301683 -19863 - L1MA4A LINE L1 -6569 640 561 423 330 81 13 chr1_random 4301930 4302166 -19380 - MIR SINE MIR -8 254 3 2238 102 0 10 chr1_random 4304058 4304361 -17185 + AluY SINE Alu 1 300 -11 432 314 50 6 chr1_random 4304748 4304907 -16639 - MIR SINE MIR -50 212 47 21 0 0 0 chr1_random 4305389 4305410 -16136 + AT_rich Low_complexity Low_complexity 1 21 0 227 369 41 25 chr1_random 4305543 4305665 -15881 + MIR SINE MIR 3 126 -136 21 0 0 0 chr1_random 4305893 4305914 -15632 + AT_rich Low_complexity Low_complexity 1 21 0 2049 94 0 31 chr1_random 4306150 4306468 -15078 - AluSg1 SINE Alu 0 309 1 2363 74 24 0 chr1_random 4307090 4307386 -14160 - AluSg SINE Alu -7 303 1 2079 103 11 14 chr1_random 4307477 4307785 -13761 + AluSg SINE Alu 1 307 0 1626 165 23 44 chr1_random 4308607 4308995 -12551 - L1MA8 LINE L1 0 6291 5912 23 33 0 0 chr1_random 4310142 4310172 -11374 + AT_rich Low_complexity Low_complexity 1 30 0 245 152 0 0 chr1_random 4310563 4310609 -10937 - LTR66 LTR ERVL -171 439 394 250 288 14 0 chr1_random 4310610 4310683 -10863 + (TA)n Simple_repeat Simple_repeat 1 74 0 1422 225 20 42 chr1_random 4311408 4311590 -9956 + L1M4 LINE L1 2813 2998 -3148 2349 72 7 0 chr1_random 4311590 4311882 -9664 - AluSg SINE Alu -16 294 1 1422 225 20 42 chr1_random 4311882 4312241 -9305 + L1M4 LINE L1 2998 3342 -2804 197 116 0 23 chr1_random 4312253 4312296 -9250 + (TAAA)n Simple_repeat Simple_repeat 2 43 0 233 305 63 11 chr1_random 4313020 4313115 -8431 + MLT1J LTR MaLR 111 210 -301 205 393 30 12 chr1_random 4313399 4313567 -7979 - MIR SINE MIR -3 259 89 414 0 0 0 chr1_random 4314004 4314050 -7496 + (TTA)n Simple_repeat Simple_repeat 3 48 0 1214 53 0 0 chr1_random 4314050 4314201 -7345 - L1PA4 LINE L1 -18 6137 5987 455 283 30 30 chr1_random 4314736 4314902 -6644 - MIR3 SINE MIR -3 205 40 210 37 0 0 chr1_random 4315089 4315116 -6430 + (CA)n Simple_repeat Simple_repeat 2 28 0 214 289 84 0 chr1_random 4315852 4315935 -5611 - MIR SINE MIR -55 207 118 443 287 9 0 chr1_random 4316094 4316202 -5344 - MIR SINE MIR -114 148 40 623 301 100 25 chr1_random 4316532 4316970 -4576 + LTR33 LTR ERVL 1 498 -23 246 62 0 0 chr1_random 4317906 4317938 -3608 + (A)n Simple_repeat Simple_repeat 1 32 0 29 0 0 0 chr1_random 4319351 4319380 -2166 + AT_rich Low_complexity Low_complexity 1 29 0 1941 139 0 0 chr1_random 4319508 4319774 -1772 + AluSq SINE Alu 18 283 -30 1725 185 16 3 chr1_random 4319892 4320200 -1346 - AluSx SINE Alu 0 312 1 5265 159 33 10 chr1_random 4320243 4321499 -47 - L1MA8 LINE L1 -7 6284 5000