7835 168 56 43 chr13 16000000 16000715 -103744183 - ERVL LTR ERVL -1512 4252 3547 2078 132 0 20 chr13 16000715 16001019 -103743879 - AluSx SINE Alu -14 298 1 7835 168 56 43 chr13 16001019 16001823 -103743075 - ERVL LTR ERVL -2217 3547 2714 2005 157 0 3 chr13 16001828 16002140 -103742758 + AluJb SINE Alu 1 311 -1 198 0 0 0 chr13 16002148 16002170 -103742728 + (A)n Simple_repeat Simple_repeat 1 22 0 198 0 0 0 chr13 16002347 16002369 -103742529 + (A)n Simple_repeat Simple_repeat 1 22 0 6590 188 47 21 chr13 16002379 16003304 -103741594 - ERVL LTR ERVL -3042 2722 1754 2137 124 0 35 chr13 16003304 16003618 -103741280 + AluSx SINE Alu 1 303 -9 6590 188 47 21 chr13 16003618 16003966 -103740932 - ERVL LTR ERVL -4010 1754 1416 547 136 48 0 chr13 16004041 16004144 -103740754 + AluSg/x SINE Alu 203 310 0 1568 207 4 0 chr13 16004144 16004424 -103740474 - ERVL LTR ERVL -4402 1362 1082 331 130 0 0 chr13 16004424 16004470 -103740428 - Alu SINE Alu -8 292 247 397 206 152 0 chr13 16004570 16004662 -103740236 - ERVL LTR ERVL -4746 1018 913 2174 127 0 3 chr13 16004692 16005000 -103739898 + AluSq SINE Alu 1 307 -6 1274 198 48 17 chr13 16005457 16005750 -103739148 + Charlie1b DNA MER1_type 6 307 -216 264 258 21 21 chr13 16005859 16005956 -103738942 + L1MC4a LINE L1 7244 7340 -468 478 181 181 0 chr13 16005986 16006091 -103738807 - FLAM_A SINE Alu -9 124 1 1966 142 0 0 chr13 16006118 16006419 -103738479 - AluSx SINE Alu 0 301 1 2285 94 0 7 chr13 16006640 16006927 -103737971 - AluSx SINE Alu -7 305 21 901 195 40 0 chr13 16006933 16007107 -103737791 - L1MC1 LINE L1 -8 6325 6145 353 276 77 32 chr13 16007108 16007329 -103737569 - MER20B DNA MER1_type -48 735 505 810 169 0 22 chr13 16007401 16007537 -103737361 + AluJo SINE Alu 3 135 -177 1284 169 56 91 chr13 16007566 16007886 -103737012 + AluJo SINE Alu 1 309 -3 592 155 4 0 chr13 16007905 16008012 -103736886 + L1M4c LINE L1 2322 2431 -3951 327 226 0 14 chr13 16008034 16008140 -103736758 - L1MCa LINE L1 -1339 6983 2006 2137 104 10 3 chr13 16008141 16008430 -103736468 - AluSq SINE Alu -22 291 1 805 130 26 0 chr13 16008451 16008566 -103736332 - FLAM_C SINE Alu -25 118 1 2018 188 12 22 chr13 16008567 16008972 -103735926 - MER74A LTR ERVL -13 545 145 424 218 16 89 chr13 16009078 16009202 -103735696 - MER74A LTR ERVL -423 135 21 2231 118 0 3 chr13 16009205 16009511 -103735387 + AluSx SINE Alu 1 305 -7 1262 218 92 13 chr13 16009511 16009951 -103734947 + L1MB3 LINE L1 5659 6119 -2 2334 82 0 3 chr13 16009951 16010243 -103734655 - AluSq SINE Alu -22 291 1 22 0 0 0 chr13 16010629 16010651 -103734247 + AT_rich Low_complexity Low_complexity 1 22 0 1611 142 85 21 chr13 16010651 16010932 -103733966 - AluJb SINE Alu -13 299 1 296 47 0 0 chr13 16010941 16010984 -103733914 - L1MB3 LINE L1 -2 6181 6139 1123 69 0 0 chr13 16011028 16011159 -103733739 - AluSg SINE Alu -179 131 1 1653 171 13 38 chr13 16011162 16011333 -103733565 - AluJo SINE Alu -4 308 147 2204 126 3 0 chr13 16011333 16011642 -103733256 - AluSq SINE Alu -3 310 1 1653 171 13 38 chr13 16011642 16011786 -103733112 - AluJo SINE Alu -165 147 1 1521 167 9 65 chr13 16011787 16011880 -103733018 - L1MB2 LINE L1 -2 6169 6072 2453 77 3 0 chr13 16011880 16012180 -103732718 - AluSp SINE Alu -11 302 2 1521 167 9 65 chr13 16012180 16012427 -103732471 - L1MB2 LINE L1 -99 6072 5848 1376 203 16 4 chr13 16012439 16012695 -103732203 + AluJo SINE Alu 14 272 -40 2128 76 69 0 chr13 16012741 16013018 -103731880 + AluSg1 SINE Alu 1 296 -13 1341 163 34 0 chr13 16013034 16013267 -103731631 - L1MB2 LINE L1 -329 5854 5614 616 159 152 8 chr13 16013267 16013399 -103731499 + MLT1A1 LTR MaLR 1 151 -214 248 233 33 0 chr13 16013515 16013575 -103731323 - L1MB2 LINE L1 -999 5147 5086 424 160 13 0 chr13 16013577 16013652 -103731246 - AluY SINE Alu -123 188 113 409 214 10 19 chr13 16013751 16013854 -103731044 - AluSp/q SINE Alu -12 301 200 312 83 0 21 chr13 16013974 16014022 -103730876 + Alu SINE Alu 32 78 -222 379 243 38 84 chr13 16014118 16014251 -103730647 + L1M4c LINE L1 1768 1906 -4478 2126 115 0 7 chr13 16014251 16014570 -103730328 + AluSx SINE Alu 3 319 0 379 243 38 84 chr13 16014570 16014627 -103730271 + L1M4c LINE L1 1906 1964 -4420 422 192 211 19 chr13 16014627 16014731 -103730167 - FLAM_A SINE Alu -9 124 1 379 243 38 84 chr13 16014731 16014850 -103730048 + L1M4c LINE L1 1964 2158 -4226 326 146 0 0 chr13 16014845 16014893 -103730005 + L1MB2 LINE L1 5420 5467 -704 * 1945 146 0 77 chr13 16014917 16015142 -103729756 - MER47A DNA MER2_type -1957 366 178 2089 126 17 3 chr13 16015142 16015435 -103729463 - AluSq SINE Alu -16 297 1 1945 146 0 77 chr13 16015435 16015572 -103729326 - MER47A DNA MER2_type -2145 178 32 1985 119 51 0 chr13 16015602 16015896 -103729002 + AluSq SINE Alu 1 309 -4 1201 156 15 65 chr13 16015934 16016115 -103728783 + L1MB2 LINE L1 5479 5645 -538 2345 129 36 80 chr13 16016115 16016563 -103728335 - MSTC LTR MaLR 0 428 1 1201 156 15 65 chr13 16016563 16016644 -103728254 + L1MB2 LINE L1 5645 5728 -455 410 197 0 0 chr13 16016866 16016937 -103727961 + MER5A DNA MER1_type 1 71 -118 2392 77 3 19 chr13 16016940 16017253 -103727645 + AluY SINE Alu 1 308 -3 2218 88 7 0 chr13 16017270 16017553 -103727345 + AluSx SINE Alu 13 297 -15 353 241 0 0 chr13 16017553 16017632 -103727266 + L1MB2 LINE L1 5930 6008 -163 * 773 179 32 105 chr13 16017631 16017910 -103726988 + L1M4c LINE L1 2260 2521 -3861 1579 230 38 99 chr13 16018024 16018701 -103726197 + L1M4c LINE L1 2484 3099 -3283 2562 54 0 3 chr13 16018701 16018996 -103725902 - AluY SINE Alu -17 294 1 1579 230 38 99 chr13 16018996 16019107 -103725791 + L1M4c LINE L1 3099 3215 -3167 1528 191 3 28 chr13 16019107 16019390 -103725508 + AluJo SINE Alu 1 276 -36 2101 100 3 47 chr13 16019393 16019712 -103725186 - AluSg SINE Alu -3 307 3 189 0 0 0 chr13 16019729 16019750 -103725148 + (TAAA)n Simple_repeat Simple_repeat 2 22 0 1881 113 64 18 chr13 16020242 16020524 -103724374 - AluSx SINE Alu -17 295 1 369 250 180 8 chr13 16020815 16020943 -103723955 - MER5A DNA MER1_type -6 183 34 586 135 0 11 chr13 16021007 16021096 -103723802 + AluJ/FLAM SINE Alu 4 91 -221 873 145 132 7 chr13 16021097 16021249 -103723649 + AluJb SINE Alu 1 171 -141 1908 161 0 0 chr13 16021249 16021522 -103723376 - AluJo SINE Alu -39 273 1 2384 38 0 0 chr13 16021524 16021790 -103723108 - AluY SINE Alu -12 299 34 1625 167 17 17 chr13 16022531 16022824 -103722074 + AluJb SINE Alu 13 305 -7 2039 79 64 4 chr13 16023384 16023679 -103721219 + AluSq SINE Alu 1 311 0 1863 148 7 0 chr13 16024089 16024403 -103720495 + AluSq SINE Alu 1 316 0 1808 173 3 3 chr13 16024498 16024793 -103720105 + AluJb SINE Alu 1 295 -17 1849 153 10 3 chr13 16024808 16025103 -103719795 + AluJb SINE Alu 1 297 -15 383 176 47 0 chr13 16025330 16025415 -103719483 - Charlie1a DNA MER1_type -459 996 908 1966 143 7 3 chr13 16025417 16025703 -103719195 + AluSx SINE Alu 3 289 -23 951 190 0 11 chr13 16025717 16025891 -103719007 - FRAM SINE Alu -12 164 1 1583 208 139 47 chr13 16025936 16026533 -103718365 - Charlie1a DNA MER1_type -550 905 254 1211 259 110 77 chr13 16026528 16027189 -103717709 + MER21B LTR ERV1 27 709 -154 * 416 234 341 0 chr13 16027220 16027387 -103717511 - Charlie1a DNA MER1_type -1177 278 55 2128 113 3 3 chr13 16027741 16028033 -103716865 + AluSq SINE Alu 1 292 -21 1695 90 9 0 chr13 16028421 16028643 -103716255 - AluSq SINE Alu -89 224 1 895 210 46 50 chr13 16028647 16028928 -103715970 + L1MC5 LINE L1 7154 7433 -528 1866 143 0 41 chr13 16028928 16029242 -103715656 + AluSx SINE Alu 1 301 -11 602 234 54 36 chr13 16029314 16029428 -103715470 + MER45A DNA AcHobo 1 120 -1461 2463 84 7 0 chr13 16029428 16029738 -103715160 + AluSp SINE Alu 2 313 0 602 234 54 36 chr13 16029738 16029790 -103715108 + MER45A DNA AcHobo 120 170 -8 290 179 0 15 chr13 16029878 16029945 -103714953 + (TA)n Simple_repeat Simple_repeat 1 66 0 234 222 99 0 chr13 16029946 16030027 -103714871 + L1MC4 LINE L1 6614 6702 -1340 2008 114 7 29 chr13 16030027 16030333 -103714565 - AluSq SINE Alu -14 299 1 844 165 0 0 chr13 16030609 16030742 -103714156 - AluJb SINE Alu -22 290 158 2161 180 99 61 chr13 16030750 16031301 -103713597 + LTR12 LTR ERV1 1 488 -226 1377 172 20 24 chr13 16031301 16031598 -103713300 - AluY SINE Alu -15 296 1 2161 180 99 61 chr13 16031598 16031628 -103713270 + LTR12 LTR ERV1 488 515 -199 235 94 38 75 chr13 16031735 16031788 -103713110 - Charlie1a DNA MER1_type -697 758 708 1617 170 0 51 chr13 16031816 16032127 -103712771 - AluJo SINE Alu -17 295 1 1897 170 19 43 chr13 16032127 16032435 -103712463 - Charlie1a DNA MER1_type -2049 712 413 2075 103 55 0 chr13 16032435 16032727 -103712171 - AluSx SINE Alu -4 308 1 1897 170 19 43 chr13 16032727 16032789 -103712109 - Charlie1a DNA MER1_type -2348 413 351 201 195 0 0 chr13 16032789 16032830 -103712068 + (CATATA)n Simple_repeat Simple_repeat 3 43 0 2245 99 3 3 chr13 16032901 16033193 -103711705 - AluSp SINE Alu -21 292 1 2273 95 0 14 chr13 16033196 16033491 -103711407 - AluSc SINE Alu -18 291 1 688 276 50 40 chr13 16033492 16033626 -103711272 - Charlie1a DNA MER1_type -2461 300 169 2110 131 7 3 chr13 16033626 16033931 -103710967 - AluSx SINE Alu -6 306 1 688 276 50 40 chr13 16033931 16033999 -103710899 - Charlie1a DNA MER1_type -2592 169 103 2335 167 17 32 chr13 16033999 16034278 -103710620 + MER65C LTR ERV1 1 272 -189 2415 82 0 0 chr13 16034278 16034570 -103710328 - AluY SINE Alu -18 293 2 2335 167 17 32 chr13 16034570 16034758 -103710140 + MER65C LTR ERV1 272 461 0 688 276 50 40 chr13 16034758 16034851 -103710047 - Charlie1a DNA MER1_type -2658 103 1 895 225 147 55 chr13 16035070 16035462 -103709436 - MER57A LTR ERV1 -2 401 1 2012 122 0 60 chr13 16035467 16035604 -103709294 + AluSx SINE Alu 1 145 -167 2097 127 0 16 chr13 16035604 16035911 -103708987 + AluSx SINE Alu 1 302 -10 2012 122 0 60 chr13 16035911 16036092 -103708806 + AluSx SINE Alu 145 300 -12 527 315 108 7 chr13 16036098 16036393 -103708505 - L1MEc LINE L1 -5972 424 100 2232 122 0 28 chr13 16036396 16036575 -103708323 - AluSx SINE Alu -1 311 128 2614 64 0 0 chr13 16036575 16036886 -103708012 - AluY SINE Alu 0 311 1 2381 94 0 3 chr13 16036888 16037197 -103707701 - AluSg SINE Alu -2 308 1 2232 122 0 28 chr13 16037197 16037334 -103707564 - AluSx SINE Alu -185 127 1 1843 161 51 106 chr13 16037474 16037583 -103707315 - MER67A LTR ERV1 0 543 430 1472 174 51 11 chr13 16037583 16037858 -103707040 + AluJo SINE Alu 1 286 -26 1843 161 51 106 chr13 16037858 16037870 -103707028 - MER67A LTR ERV1 -113 430 419 2059 107 3 17 chr13 16037870 16038005 -103706893 + AluSx SINE Alu 3 138 -174 2311 113 3 0 chr13 16038005 16038316 -103706582 + AluSp SINE Alu 1 312 -1 2059 107 3 17 chr13 16038316 16038469 -103706429 + AluSx SINE Alu 138 287 -25 2240 95 3 29 chr13 16038470 16038785 -103706113 + AluSg SINE Alu 1 307 -3 1843 161 51 106 chr13 16038785 16039131 -103705767 - MER67A LTR ERV1 -123 420 99 2143 122 6 10 chr13 16039131 16039443 -103705455 + AluSx SINE Alu 1 311 -1 1157 151 0 0 chr13 16039443 16039609 -103705289 + AluSg/x SINE Alu 126 291 -21 1948 153 0 16 chr13 16039620 16039933 -103704965 + AluJo SINE Alu 1 308 -4 183 42 0 0 chr13 16039988 16040012 -103704886 + (TTTTA)n Simple_repeat Simple_repeat 2 25 0 1966 85 0 0 chr13 16040014 16040249 -103704649 - AluSg SINE Alu -75 235 1 2278 103 7 0 chr13 16040307 16040607 -103704291 - AluSp SINE Alu -11 302 1 1321 95 0 0 chr13 16040609 16040777 -103704121 - AluSg/x SINE Alu -10 302 135 3606 81 35 2 chr13 16041004 16041488 -103703410 - LTR3b LTR ERVK 0 500 1 2356 90 3 16 chr13 16042581 16042891 -103702007 - AluSx SINE Alu -5 307 2 342 82 260 14 chr13 16042913 16042986 -103701912 - HY1 scRNA scRNA -11 101 11 2013 131 35 7 chr13 16043007 16043297 -103701601 - AluJb SINE Alu -14 298 1 1786 128 115 10 chr13 16043359 16043664 -103701234 - MER1B DNA MER1_type 0 337 1 2047 132 7 23 chr13 16043922 16044093 -103700805 - AluSx SINE Alu -7 305 140 2119 121 16 3 chr13 16044093 16044400 -103700498 - AluSq SINE Alu 0 313 3 2047 132 7 23 chr13 16044400 16044538 -103700360 - AluSx SINE Alu -172 140 1 1978 148 3 0 chr13 16045006 16045296 -103699602 - AluSc SINE Alu -18 291 1 2138 83 57 20 chr13 16045331 16045651 -103699247 + AluSq SINE Alu 1 313 0 530 248 24 0 chr13 16045710 16045835 -103699063 - FLAM_A SINE Alu -4 129 2 2058 138 3 0 chr13 16046182 16046480 -103698418 - AluSx SINE Alu -13 299 1 737 179 8 0 chr13 16046653 16046770 -103698128 + FLAM_C SINE Alu 1 118 -15 189 0 0 0 chr13 16046774 16046795 -103698103 + (CAAA)n Simple_repeat Simple_repeat 2 22 0 22 0 0 0 chr13 16046956 16046978 -103697920 + AT_rich Low_complexity Low_complexity 1 22 0 31 26 0 0 chr13 16047152 16047190 -103697708 + AT_rich Low_complexity Low_complexity 1 38 0 2195 122 0 0 chr13 16047508 16047804 -103697094 - AluSx SINE Alu -16 296 1 620 126 110 176 chr13 16048957 16049028 -103695870 + L1MB8 LINE L1 5360 5434 -750 2206 125 0 6 chr13 16049028 16049340 -103695558 + AluSx SINE Alu 1 310 -2 620 126 110 176 chr13 16049340 16049424 -103695474 + L1MB8 LINE L1 5434 5494 -690 1888 160 0 19 chr13 16049424 16049742 -103695156 + AluSx SINE Alu 1 312 0 620 126 110 176 chr13 16049742 16049840 -103695058 + L1MB8 LINE L1 5494 5597 -587 1220 123 22 0 chr13 16049859 16050038 -103694860 + AluSg/x SINE Alu 121 303 -9 1928 191 66 41 chr13 16050043 16050140 -103694758 + L1MB8 LINE L1 5580 5673 -505 2195 96 0 13 chr13 16050140 16050441 -103694457 + AluSg1 SINE Alu 1 297 -12 1928 191 66 41 chr13 16050441 16050826 -103694072 + L1MB8 LINE L1 5673 6074 -104 254 100 60 0 chr13 16050821 16050871 -103694027 + L1MB7 LINE L1 6132 6184 0 * 23 68 0 0 chr13 16051356 16051400 -103693498 + AT_rich Low_complexity Low_complexity 1 44 0 2491 45 41 0 chr13 16051415 16051707 -103693191 + AluY SINE Alu 1 304 -7 2259 77 0 0 chr13 16051857 16052142 -103692756 + AluSx SINE Alu 1 285 -27 738 318 82 23 chr13 16052186 16052529 -103692369 - L2 LINE L2 -581 2733 2371 484 149 11 23 chr13 16052540 16052627 -103692271 + Tigger3(Golem) DNA MER2_type 13 98 -2931 807 167 48 12 chr13 16052627 16052795 -103692103 + AluJb SINE Alu 135 308 -4 309 241 86 69 chr13 16052799 16052915 -103691983 - HAL1 LINE L1 -23 2484 2367 32 57 0 0 chr13 16052915 16052968 -103691930 + AT_rich Low_complexity Low_complexity 1 53 0 1584 153 21 28 chr13 16052968 16053255 -103691643 - AluJb SINE Alu -26 286 2 828 233 18 0 chr13 16053261 16053424 -103691474 - FAM SINE Alu -9 166 1 436 247 37 74 chr13 16053432 16053622 -103691276 - HAL1 LINE L1 -131 2376 2194 895 194 56 6 chr13 16053635 16053815 -103691083 - MER20 DNA MER1_type -30 189 1 922 191 0 0 chr13 16054045 16054207 -103690691 - AluJb SINE Alu -17 295 134 1509 122 95 8 chr13 16054214 16054476 -103690422 - AluSg SINE Alu -25 285 1 2188 78 41 0 chr13 16054499 16054792 -103690106 - AluY SINE Alu -6 305 1 1809 158 7 0 chr13 16054794 16055086 -103689812 - AluJb SINE Alu -14 298 5 2050 90 43 13 chr13 16055180 16055480 -103689418 + AluSx SINE Alu 1 309 -3 243 0 0 0 chr13 16055584 16055611 -103689287 + (A)n Simple_repeat Simple_repeat 1 27 0 2144 96 0 7 chr13 16055653 16055954 -103688944 - AluSx SINE Alu -13 299 1 2035 123 3 0 chr13 16056122 16056422 -103688476 - AluSx SINE Alu -11 301 1 1113 193 148 37 chr13 16056558 16056828 -103688070 - AluJo SINE Alu 0 302 3 616 267 107 21 chr13 16057071 16057352 -103687546 - L1M4 LINE L1 -1116 5030 4726 783 202 31 73 chr13 16057365 16057652 -103687246 + L1M4 LINE L1 4954 5228 -918 817 143 0 84 chr13 16057655 16057771 -103687127 + FLAM_C SINE Alu 2 103 -209 2112 99 7 10 chr13 16057771 16058074 -103686824 - AluSq SINE Alu -11 302 1 817 143 0 84 chr13 16058074 16058111 -103686787 + FLAM_C SINE Alu 103 142 -170 267 149 0 24 chr13 16058115 16058191 -103686707 + L1M4 LINE L1 5227 5300 -846 235 280 0 0 chr13 16058293 16058343 -103686555 - MER5A DNA MER1_type -106 83 34 593 135 0 11 chr13 16058407 16058496 -103686402 + AluJ/FLAM SINE Alu 4 91 -221 810 145 132 7 chr13 16058497 16058649 -103686249 + AluJb SINE Alu 1 171 -141 1813 158 0 0 chr13 16058649 16058922 -103685976 - AluJo SINE Alu -39 273 1 1953 127 31 0 chr13 16058924 16059215 -103685683 - AluSx SINE Alu -12 300 1 1958 136 10 0 chr13 16059245 16059555 -103685343 + MER47A DNA MER2_type 1 313 -53 258 260 0 55 chr13 16059598 16059671 -103685227 + MER47A DNA MER2_type 298 366 0 * 363 71 36 18 chr13 16059671 16059724 -103685174 + Charlie1a DNA MER1_type 757 810 -645 1949 129 7 0 chr13 16059730 16060025 -103684873 - AluSp SINE Alu -16 297 1 2211 112 0 0 chr13 16060076 16060388 -103684510 - AluSx SINE Alu 0 312 1 261 122 0 0 chr13 16060399 16060440 -103684458 + Charlie1a DNA MER1_type 832 872 -583 1029 165 67 0 chr13 16060460 16060654 -103684244 + AluJb SINE Alu 87 293 -19 739 218 47 5 chr13 16060671 16060864 -103684034 + Charlie1a DNA MER1_type 1055 1255 -200 322 191 17 26 chr13 16060907 16061022 -103683876 + T-rich Low_complexity Low_complexity 5 118 0 209 0 65 0 chr13 16061022 16061053 -103683845 + (TC)n Simple_repeat Simple_repeat 1 33 0 607 177 35 0 chr13 16061054 16061167 -103683731 - AluSg/x SINE Alu -5 305 189 2022 109 3 0 chr13 16061170 16061454 -103683444 + AluSx SINE Alu 1 285 -27 189 0 0 0 chr13 16061454 16061475 -103683423 + (CA)n Simple_repeat Simple_repeat 2 22 0 1130 153 0 0 chr13 16061475 16061645 -103683253 + AluSg/x SINE Alu 129 298 -12 757 136 0 0 chr13 16061690 16061800 -103683098 + FLAM_C SINE Alu 2 111 -32 1932 126 26 0 chr13 16061816 16062118 -103682780 - AluSx SINE Alu 0 312 3 2305 61 0 10 chr13 16062274 16062571 -103682327 + AluY SINE Alu 1 294 -17 473 200 11 0 chr13 16062578 16062673 -103682225 + MER66A LTR ERV1 287 382 -96 1087 133 0 22 chr13 16062674 16062691 -103682207 + AluSq SINE Alu 120 136 -177 2198 101 0 7 chr13 16062691 16062997 -103681901 + AluSg SINE Alu 1 304 -6 1087 133 0 22 chr13 16062997 16063159 -103681739 + AluSq SINE Alu 136 295 -18 2034 107 3 3 chr13 16063206 16063505 -103681393 + AluSc SINE Alu 2 300 -9 336 266 150 9 chr13 16063531 16063644 -103681254 + MIR SINE MIR 16 144 -64 366 258 148 19 chr13 16063650 16063805 -103681093 + L1MB4 LINE L1 5444 5618 -2190 371 191 0 0 chr13 16063882 16063945 -103680953 - L1MC4 LINE L1 -1340 6702 6640 1579 178 20 13 chr13 16063946 16064249 -103680649 - AluJb SINE Alu -7 305 1 1093 119 0 99 chr13 16064273 16064475 -103680423 + AluSx SINE Alu 1 182 -130 263 94 0 0 chr13 16064477 16064509 -103680389 + Alu SINE Alu 18 49 -251 2100 98 3 0 chr13 16064509 16064794 -103680104 + AluSq SINE Alu 18 303 -10 1158 141 0 0 chr13 16064796 16064973 -103679925 + AluSq SINE Alu 136 312 -1 2137 105 3 0 chr13 16065155 16065451 -103679447 - AluSx SINE Alu -15 297 1 708 153 0 8 chr13 16065474 16065592 -103679306 - AluSg/x SINE Alu -13 299 183 410 203 0 0 chr13 16065593 16065657 -103679241 - AluS SINE Alu -239 64 1 979 224 97 52 chr13 16065683 16066032 -103678866 - MLT1A1 LTR MaLR 0 365 1 879 214 0 37 chr13 16066121 16066308 -103678590 + AluJb SINE Alu 126 305 -7 1789 138 35 18 chr13 16066311 16066611 -103678287 + L1MB4 LINE L1 5831 6139 -41 2288 67 0 20 chr13 16066611 16066910 -103677988 + AluSc SINE Alu 1 293 -16 1789 138 35 18 chr13 16066910 16066949 -103677949 + L1MB4 LINE L1 6139 6176 -4 26 0 0 27 chr13 16066966 16066988 -103677910 + AT_rich Low_complexity Low_complexity 1 23 -13 1681 117 98 0 chr13 16066988 16067252 -103677646 - AluSx SINE Alu -22 290 1 26 0 0 27 chr13 16067252 16067266 -103677632 + AT_rich Low_complexity Low_complexity 23 36 0 815 169 0 0 chr13 16067272 16067402 -103677496 - AluJb SINE Alu -30 282 153 2242 193 23 25 chr13 16067420 16067732 -103677166 - L1M4 LINE L1 -981 5165 4853 2129 129 0 0 chr13 16067732 16068035 -103676863 + AluSx SINE Alu 1 303 -9 2242 193 23 25 chr13 16068035 16068245 -103676653 - L1M4 LINE L1 -1293 4853 4644 2001 112 0 11 chr13 16068263 16068540 -103676358 - AluSp SINE Alu -35 278 5 257 108 0 0 chr13 16068540 16068577 -103676321 - L1M4 LINE L1 -1605 4541 4505 1045 160 10 10 chr13 16068578 16068778 -103676120 - AluJb SINE Alu -5 307 108 1527 171 15 0 chr13 16068800 16069074 -103675824 + AluSx SINE Alu 30 307 -5 702 161 0 0 chr13 16069155 16069267 -103675631 - AluSg/x SINE Alu -13 297 186 2068 109 3 3 chr13 16069784 16070078 -103674820 - AluSg1 SINE Alu -14 295 2 364 184 89 16 chr13 16070092 16070233 -103674665 + L1ME LINE L1 5197 5345 -801 840 145 0 0 chr13 16070257 16070388 -103674510 - FLAM_C SINE Alu -1 132 2 324 176 44 15 chr13 16070389 16070457 -103674441 + L1ME LINE L1 5492 5561 -603 1683 164 21 0 chr13 16070496 16070783 -103674115 - AluSx SINE Alu -16 296 4 1585 194 3 13 chr13 16070787 16071096 -103673802 - AluJo SINE Alu -6 306 1 2267 91 0 0 chr13 16071628 16071925 -103672973 - AluSx SINE Alu -15 297 1 545 230 40 8 chr13 16072072 16072198 -103672700 - FLAM_A SINE Alu -3 130 1 711 219 20 13 chr13 16072249 16072400 -103672498 - FRAM SINE Alu -14 162 11 338 97 0 32 chr13 16072758 16072820 -103672078 - L1PA16 LINE L1 -9 6157 6098 2109 100 43 0 chr13 16072822 16073121 -103671777 - AluSx SINE Alu 0 312 1 475 130 0 0 chr13 16073503 16073572 -103671326 - AluS SINE Alu -242 70 2 1602 173 3 22 chr13 16073600 16073918 -103670980 - AluSx SINE Alu 0 312 1 315 118 29 59 chr13 16073918 16073935 -103670963 - L1M LINE L1 -861 5323 5307 868 146 0 8 chr13 16073935 16074065 -103670833 - FLAM_C SINE Alu -4 129 1 315 118 29 59 chr13 16074065 16074115 -103670783 - L1M LINE L1 -877 5307 5258 1951 119 3 7 chr13 16074156 16074449 -103670449 + AluSq SINE Alu 1 292 -21 390 156 12 0 chr13 16074453 16074527 -103670371 - L1 LINE L1 -887 5259 5180 375 275 72 62 chr13 16074527 16074720 -103670178 - L1MEd LINE L1 -5231 888 694 2087 183 70 47 chr13 16074742 16075169 -103669729 + MER31A LTR ERV1 1 441 -44 2195 76 10 16 chr13 16075169 16075483 -103669415 - AluSx SINE Alu 0 312 1 2087 183 70 47 chr13 16075483 16075525 -103669373 + MER31A LTR ERV1 441 481 -4 2271 83 10 6 chr13 16075572 16075884 -103669014 - AluSp SINE Alu 0 313 1 568 190 127 16 chr13 16076015 16076346 -103668552 + MER39 LTR ERV1 4 445 -262 765 210 0 0 chr13 16076367 16076505 -103668393 - FRAM SINE Alu -36 140 3 207 0 0 0 chr13 16076511 16076534 -103668364 + (A)n Simple_repeat Simple_repeat 1 23 0 1920 142 17 0 chr13 16076536 16076832 -103668066 + AluSx SINE Alu 1 301 -11 640 254 53 37 chr13 16076832 16077021 -103667877 - MER21B LTR ERV1 -351 512 321 2055 103 13 17 chr13 16077036 16077338 -103667560 - AluSx SINE Alu -11 301 1 1215 97 16 3 chr13 16077404 16077597 -103667301 - LTR56 LTR ERV1 0 445 270 2144 120 0 7 chr13 16077605 16077913 -103666985 + AluSx SINE Alu 6 311 -1 820 154 0 0 chr13 16077915 16078038 -103666860 - AluJo/FLAM SINE Alu -187 125 3 513 155 21 10 chr13 16078038 16078135 -103666763 - LTR56 LTR ERV1 -303 142 45 1258 148 6 107 chr13 16078136 16078367 -103666531 - AluJo SINE Alu 0 312 124 2258 87 0 0 chr13 16078367 16078665 -103666233 + AluY SINE Alu 1 298 -13 1258 148 6 107 chr13 16078665 16078770 -103666128 - AluJo SINE Alu -188 124 10 296 65 0 43 chr13 16078785 16078831 -103666067 - LTR56 LTR ERV1 -394 51 8 305 181 24 60 chr13 16078833 16078916 -103665982 - MER21B LTR ERV1 -655 208 129 277 203 29 58 chr13 16078979 16079048 -103665850 - MER21B LTR ERV1 -755 108 42 566 171 9 9 chr13 16079062 16079167 -103665731 + FRAM SINE Alu 20 124 -52 207 88 0 0 chr13 16079183 16079217 -103665681 + (TTAAA)n Simple_repeat Simple_repeat 2 35 0 254 254 45 37 chr13 16079275 16079409 -103665489 - L1MEd LINE L1 -5981 138 4 1269 168 10 69 chr13 16079436 16079555 -103665343 + AluJb SINE Alu 1 125 -187 1926 131 3 7 chr13 16079555 16079860 -103665038 + AluSg SINE Alu 1 304 -6 1269 168 10 69 chr13 16079860 16079894 -103665004 + AluJb SINE Alu 125 159 -153 2149 104 7 0 chr13 16079894 16080191 -103664707 + AluSp SINE Alu 1 299 -14 1269 168 10 69 chr13 16080191 16080340 -103664558 + AluJb SINE Alu 159 286 -26 23 33 0 0 chr13 16080406 16080436 -103664462 + AT_rich Low_complexity Low_complexity 1 30 0 706 279 81 38 chr13 16080440 16080632 -103664266 - L2 LINE L2 -639 2675 2493 2501 52 0 13 chr13 16080632 16080942 -103663956 + AluY SINE Alu 1 306 -5 706 279 81 38 chr13 16080942 16081118 -103663780 - L2 LINE L2 -821 2493 2291 1885 120 43 7 chr13 16081143 16081443 -103663455 - AluSp SINE Alu -2 311 1 205 151 57 19 chr13 16081508 16081561 -103663337 + T-rich Low_complexity Low_complexity 5 59 0 1864 135 26 0 chr13 16081571 16081875 -103663023 - AluSx SINE Alu 0 312 1 1991 117 6 22 chr13 16081930 16082247 -103662651 - AluSx SINE Alu 0 312 1 307 183 19 135 chr13 16082260 16082327 -103662571 + MIR SINE MIR 60 112 -150 2250 87 0 16 chr13 16082327 16082639 -103662259 - AluY SINE Alu -4 307 1 307 183 19 135 chr13 16082639 16082675 -103662223 + MIR SINE MIR 112 151 -111 745 101 10 0 chr13 16082678 16082777 -103662121 + AluSq/x SINE Alu 4 103 -210 771 90 0 0 chr13 16082899 16082999 -103661899 - AluSp/q SINE Alu -19 294 195 229 298 32 21 chr13 16083036 16083130 -103661768 - HAL1 LINE L1 -2003 504 410 422 287 138 11 chr13 16083190 16083371 -103661527 - HAL1 LINE L1 -2198 309 106 1833 130 3 7 chr13 16083434 16083719 -103661179 - AluJb SINE Alu -7 305 22 1692 161 7 3 chr13 16083819 16083996 -103660902 - AluJo SINE Alu -2 310 135 182 61 0 30 chr13 16083996 16084029 -103660869 + (TTTTA)n Simple_repeat Simple_repeat 2 33 0 1601 156 18 14 chr13 16084029 16084311 -103660587 - AluJo SINE Alu -29 283 1 1692 161 7 3 chr13 16084311 16084437 -103660461 - AluJo SINE Alu -176 136 5 2495 48 0 0 chr13 16084909 16085218 -103659680 - AluY SINE Alu -2 309 1 970 165 0 12 chr13 16085218 16085374 -103659524 - AluSg/x SINE Alu -15 295 140 2115 107 3 0 chr13 16085383 16085674 -103659224 - AluSp SINE Alu -11 302 11 297 285 146 18 chr13 16085683 16085848 -103659050 - MIR SINE MIR -1 261 76 2251 75 0 22 chr13 16085995 16086313 -103658585 - AluY SINE Alu 0 311 1 1844 80 109 4 chr13 16086324 16086598 -103658300 - AluSg SINE Alu -7 303 1 2241 91 3 0 chr13 16087154 16087451 -103657447 - AluY SINE Alu -13 298 1 29 0 0 0 chr13 16087977 16088006 -103656892 + AT_rich Low_complexity Low_complexity 1 29 0 1869 124 0 24 chr13 16088014 16088331 -103656567 + AluSq SINE Alu 1 310 0 32 26 0 0 chr13 16088376 16088415 -103656483 + AT_rich Low_complexity Low_complexity 1 39 0 1908 122 0 34 chr13 16088629 16088956 -103655942 + AluSq SINE Alu 1 317 0 198 0 0 0 chr13 16089706 16089728 -103655170 + (CAT)n Simple_repeat Simple_repeat 1 22 0 261 287 136 10 chr13 16090389 16090550 -103654348 - MIR SINE MIR -32 230 44 1565 183 0 14 chr13 16090560 16090855 -103654043 - AluJo SINE Alu -21 291 1 300 226 89 8 chr13 16091160 16091284 -103653614 - AluSq/x SINE Alu -167 136 3 2099 96 38 0 chr13 16091551 16091842 -103653056 - AluSx SINE Alu -10 302 1 464 286 24 16 chr13 16091842 16091968 -103652930 + HAL1 LINE L1 1039 1165 -1342 252 0 0 0 chr13 16092040 16092068 -103652830 + (TG)n Simple_repeat Simple_repeat 2 29 0 831 206 6 6 chr13 16092089 16092249 -103652649 - FRAM SINE Alu -5 161 2 1681 157 17 27 chr13 16092263 16092556 -103652342 - AluJb SINE Alu -22 290 1 25 75 0 0 chr13 16094277 16094330 -103650568 + GC_rich Low_complexity Low_complexity 1 53 0 1532 95 26 35 chr13 16096235 16096467 -103648431 + MER30 DNA MER1_type 1 230 0 315 263 114 57 chr13 16097001 16097176 -103647722 + MIR SINE MIR 6 190 -72 1054 148 6 0 chr13 16097176 16097345 -103647553 + AluSg/x SINE Alu 130 299 -11 964 163 9 62 chr13 16097451 16097678 -103647220 + AluJo SINE Alu 91 305 -7 276 195 53 62 chr13 16097695 16097808 -103647090 + L1M4 LINE L1 4229 4340 -1806 2385 74 0 0 chr13 16097855 16098154 -103646744 + AluSp SINE Alu 1 299 -14 2198 105 0 0 chr13 16098417 16098713 -103646185 - AluSx SINE Alu -16 296 1 1582 181 37 10 chr13 16098713 16099012 -103645886 + MER65C LTR ERV1 155 461 0 842 249 39 55 chr13 16099030 16099445 -103645453 - L1MC5 LINE L1 -889 6919 6571 2016 116 0 0 chr13 16099532 16099838 -103645060 - AluSx SINE Alu 0 306 1 21 0 0 0 chr13 16099916 16099937 -103644961 + AT_rich Low_complexity Low_complexity 1 21 0 1785 141 13 19 chr13 16100293 16100606 -103644292 + AluJb SINE Alu 1 311 -1 1344 198 32 8 chr13 16100668 16100921 -103643977 - MLT1F1 LTR MaLR -11 556 298 1619 166 63 0 chr13 16100941 16101225 -103643673 - AluJo SINE Alu -10 302 1 244 123 0 53 chr13 16101241 16101298 -103643600 + (TTCC)n Simple_repeat Simple_repeat 4 57 0 397 170 0 20 chr13 16101465 16101565 -103643333 + CT-rich Low_complexity Low_complexity 1 98 0 2066 97 0 67 chr13 16101565 16101895 -103643003 - AluSx SINE Alu -4 308 1 524 244 37 0 chr13 16101897 16102032 -103642866 - MLT1F1 LTR MaLR -427 140 1 366 305 73 13 chr13 16102206 16102357 -103642541 + L1M4 LINE L1 2271 2430 -3716 705 159 153 32 chr13 16102373 16102530 -103642368 - FRAM SINE Alu 0 40 1 318 326 91 23 chr13 16102719 16102894 -103642004 + L1M4 LINE L1 2689 2875 -3271 1190 194 8 28 chr13 16102941 16103188 -103641710 - AluJb SINE Alu -13 299 58 2059 123 3 0 chr13 16103237 16103537 -103641361 + AluSx SINE Alu 1 301 -11 1123 248 111 46 chr13 16103570 16103685 -103641213 - L1MC4 LINE L1 -15 8027 7921 1788 154 7 10 chr13 16103685 16103990 -103640908 + AluSx SINE Alu 1 304 -8 1123 248 111 46 chr13 16103990 16104334 -103640564 - L1MC4 LINE L1 -121 7921 7538 2190 89 0 0 chr13 16104349 16104675 -103640223 - AluSg SINE Alu 0 326 1 190 289 0 0 chr13 16104685 16104737 -103640161 + MER5A DNA MER1_type 136 187 -2 186 167 0 125 chr13 16104850 16104898 -103640000 + MIR SINE MIR 220 261 -1 359 199 82 110 chr13 16104900 16105046 -103639852 + MIR3 SINE MIR 45 186 -22 1658 166 43 7 chr13 16105176 16105355 -103639543 - AluJo SINE Alu 0 312 116 192 40 0 0 chr13 16105355 16105380 -103639518 + (TTTA)n Simple_repeat Simple_repeat 2 26 0 1658 166 43 7 chr13 16105380 16105501 -103639397 - AluJo SINE Alu -196 116 1 675 252 41 49 chr13 16105501 16105747 -103639151 - MLT1D LTR MaLR -261 244 1 2263 140 79 0 chr13 16105776 16106154 -103638744 + L1PA16 LINE L1 5374 5781 -385 602 175 0 0 chr13 16106155 16106252 -103638646 + U13 snRNA snRNA 1 97 -7 1246 109 18 68 chr13 16106253 16106317 -103638581 + L1PA16 LINE L1 5769 5835 -331 2261 89 0 0 chr13 16106317 16106620 -103638278 + AluSc SINE Alu 2 304 -5 1246 109 18 68 chr13 16106620 16106775 -103638123 + L1PA16 LINE L1 5835 5977 -189 1067 89 0 7 chr13 16106877 16107023 -103637875 - AluSq/x SINE Alu -168 145 1 2012 119 3 3 chr13 16107024 16107318 -103637580 - AluSx SINE Alu -18 294 1 4721 171 29 102 chr13 16107332 16107568 -103637330 - L1MB3 LINE L1 -7 6176 5924 1640 180 35 96 chr13 16107568 16107640 -103637258 - MSTB1 LTR MaLR 0 432 357 2287 45 48 0 chr13 16107640 16107931 -103636967 + AluY SINE Alu 1 305 -6 1640 180 35 96 chr13 16107931 16108318 -103636580 - MSTB1 LTR MaLR -75 357 1 4721 171 29 102 chr13 16108318 16108752 -103636146 - L1MB3 LINE L1 -259 5924 5460 2190 108 0 0 chr13 16108752 16109048 -103635850 - AluSx SINE Alu -16 296 1 4721 171 29 102 chr13 16109048 16109213 -103635685 - L1MB3 LINE L1 -723 5460 5285 2156 98 30 0 chr13 16109213 16109508 -103635390 - AluSq SINE Alu -9 304 1 4721 171 29 102 chr13 16109508 16109993 -103634905 - L1MB3 LINE L1 -898 5285 4881 712 194 0 50 chr13 16109993 16110132 -103634766 + AluJo SINE Alu 5 136 -176 4721 171 29 102 chr13 16110132 16110440 -103634458 - L1MB3 LINE L1 -1302 4881 4552 2460 204 12 39 chr13 16110440 16110951 -103633947 + MLT2B2 LTR ERVL 1 497 -18 1391 205 32 63 chr13 16110952 16111126 -103633772 - L1MB3 LINE L1 -1583 4563 4385 2036 108 7 3 chr13 16111126 16111423 -103633475 - AluSx SINE Alu -14 298 1 1391 205 32 63 chr13 16111423 16111576 -103633322 - L1MB3 LINE L1 -1761 4385 4251 2161 105 7 0 chr13 16111576 16111882 -103633016 - AluSg SINE Alu -2 308 1 1391 205 32 63 chr13 16111882 16111996 -103632902 - L1MB3 LINE L1 -1895 4251 4135 569 152 0 10 chr13 16112037 16112136 -103632762 + AluSx SINE Alu 2 99 -213 1460 113 5 0 chr13 16112259 16112462 -103632436 + AluSx SINE Alu 87 290 -22 518 106 75 32 chr13 16112472 16112566 -103632332 + MER20 DNA MER1_type 49 146 -73 268 241 152 73 chr13 16112653 16112844 -103632054 - L2 LINE L2 -1131 2183 1978 1920 124 0 0 chr13 16112860 16113164 -103631734 - AluSx SINE Alu 0 304 1 2314 86 10 0 chr13 16113194 16113498 -103631400 - AluY SINE Alu -4 307 1 462 36 0 0 chr13 16113515 16113571 -103631327 + (TTTA)n Simple_repeat Simple_repeat 2 57 0 1854 115 0 0 chr13 16113592 16113853 -103631045 - AluSq SINE Alu -52 261 1 312 296 120 42 chr13 16113862 16114004 -103630894 - MIR SINE MIR -72 190 38 * 463 306 10 31 chr13 16113943 16114136 -103630762 - L2 LINE L2 -1340 1974 1786 2092 105 0 3 chr13 16114136 16114431 -103630467 - AluSx SINE Alu -18 294 1 2261 82 13 0 chr13 16114438 16114743 -103630155 - AluY SINE Alu -2 309 1 1049 75 0 0 chr13 16114744 16114877 -103630021 - AluSq/x SINE Alu -179 133 1 909 286 58 48 chr13 16114948 16115346 -103629552 - L2 LINE L2 -2739 575 174 2165 94 10 3 chr13 16115364 16115662 -103629236 + AluSq SINE Alu 1 300 -13 1703 127 8 4 chr13 16115800 16116068 -103628830 - AluSq SINE Alu -44 269 1 2265 204 87 15 chr13 16116068 16116607 -103628291 - L1ME1 LINE L1 -32 6134 5557 488 161 58 0 chr13 16116658 16116745 -103628153 + MER58B DNA MER1_type 250 341 0 2181 67 7 7 chr13 16117007 16117333 -103627565 + AluSg SINE Alu 1 326 0 626 126 11 0 chr13 16118796 16118891 -103626007 - AluJo SINE Alu -177 135 40 1243 96 138 0 chr13 16119220 16119408 -103625490 + AluSg/x SINE Alu 82 295 -15 1732 111 62 21 chr13 16119425 16119713 -103625185 - AluJo SINE Alu -12 300 1 6193 72 7 59 chr13 16119763 16121074 -103623824 - SVA Other Other -551 1384 433 2155 75 18 0 chr13 16121184 16121464 -103623434 + AluY SINE Alu 10 294 -17 364 243 33 92 chr13 16121464 16121510 -103623388 - L1ME2 LINE L1 -21 6143 6096 1457 191 38 17 chr13 16121510 16121803 -103623095 - AluJb SINE Alu -13 299 1 364 243 33 92 chr13 16121803 16121908 -103622990 - L1ME2 LINE L1 -68 6096 6001 2196 93 0 3 chr13 16121911 16122213 -103622685 - AluY SINE Alu -10 301 1 1166 172 14 28 chr13 16122383 16122598 -103622300 + MER2 DNA MER2_type 1 212 -133 2092 93 3 50 chr13 16122602 16122925 -103621973 - AluSg SINE Alu -2 308 1 691 197 0 29 chr13 16122951 16123088 -103621810 - AluJo SINE Alu -178 134 2 239 196 0 54 chr13 16123136 16123147 -103621751 + MER2 DNA MER2_type 268 278 -67 1913 139 0 16 chr13 16123147 16123464 -103621434 - AluSx SINE Alu 0 312 1 239 196 0 54 chr13 16123464 16123508 -103621390 + MER2 DNA MER2_type 278 320 -25 1492 163 25 18 chr13 16124029 16124306 -103620592 + AluJo SINE Alu 5 283 -29 1951 120 43 3 chr13 16124444 16124743 -103620155 + AluSx SINE Alu 1 311 -1 2000 122 10 0 chr13 16124797 16125101 -103619797 - AluSx SINE Alu -5 307 1 1683 103 84 7 chr13 16126079 16126352 -103618546 + AluSx SINE Alu 5 298 -14 1050 171 11 0 chr13 16126352 16126533 -103618365 + AluSg/x SINE Alu 106 288 -22 1902 130 3 3 chr13 16126543 16126851 -103618047 + AluSx SINE Alu 1 308 -4 527 125 0 0 chr13 16126908 16126980 -103617918 + FRAM SINE Alu 22 93 -83 34 24 0 0 chr13 16126990 16127031 -103617867 + AT_rich Low_complexity Low_complexity 1 41 0 1881 96 9 92 chr13 16127060 16127266 -103617632 - AluSx SINE Alu -5 307 138 1516 115 0 0 chr13 16127266 16127475 -103617423 - AluSx SINE Alu -103 209 1 1881 96 9 92 chr13 16127475 16127603 -103617295 - AluSx SINE Alu -174 138 1 2583 196 100 70 chr13 16127604 16128216 -103616682 - L1ME2 LINE L1 -57 6107 5515 1871 97 45 39 chr13 16128216 16128419 -103616479 - AluSp SINE Alu -2 311 104 2327 49 7 0 chr13 16128419 16128707 -103616191 - AluY SINE Alu -21 290 1 1871 97 45 39 chr13 16128707 16128812 -103616086 - AluSp SINE Alu -209 104 1 1626 174 3 16 chr13 16128821 16129126 -103615772 - AluSx SINE Alu -9 303 3 2583 196 100 70 chr13 16129126 16129310 -103615588 - L1ME2 LINE L1 -656 5508 5331 2316 72 3 7 chr13 16129310 16129615 -103615283 - AluY SINE Alu -7 304 1 2583 196 100 70 chr13 16129615 16129721 -103615177 - L1ME2 LINE L1 -833 5331 5230 1637 165 0 38 chr13 16129721 16130037 -103614861 - AluJo SINE Alu 0 312 9 2583 196 100 70 chr13 16130037 16130318 -103614580 - L1ME2 LINE L1 -934 5230 4882 330 270 92 0 chr13 16130342 16130494 -103614404 - L1ME2 LINE L1 -1330 4816 4651 31 0 0 0 chr13 16130790 16130821 -103614077 + AT_rich Low_complexity Low_complexity 1 31 0 341 104 0 0 chr13 16130821 16130869 -103614029 - AluSq/x SINE Alu -170 133 86 901 177 9 64 chr13 16130869 16131089 -103613809 - AluJo SINE Alu -92 220 13 859 218 0 0 chr13 16131101 16131275 -103613623 - AluJb SINE Alu -5 307 134 1304 198 70 4 chr13 16131297 16131570 -103613328 - AluJb SINE Alu -21 291 1 255 31 0 0 chr13 16131575 16131607 -103613291 + (ATTG)n Simple_repeat Simple_repeat 2 33 0 1827 148 0 0 chr13 16131607 16131890 -103613008 - AluSx SINE Alu -29 283 1 674 218 46 25 chr13 16132269 16132355 -103612543 + Looper DNA T2_type 65 148 -1410 736 168 64 0 chr13 16132355 16132480 -103612418 + FLAM_A SINE Alu 1 133 0 674 218 46 25 chr13 16132480 16132614 -103612284 + Looper DNA T2_type 148 293 -1265 198 0 0 0 chr13 16132614 16132636 -103612262 + (TAA)n Simple_repeat Simple_repeat 1 22 0 674 218 46 25 chr13 16132636 16132653 -103612245 + Looper DNA T2_type 293 308 -1250 1201 152 5 0 chr13 16132653 16132844 -103612054 - AluSg/x SINE Alu -25 287 96 387 205 37 81 chr13 16132855 16133016 -103611882 + Looper DNA T2_type 284 437 -1121 1222 165 0 19 chr13 16133029 16133241 -103611657 + AluJb SINE Alu 87 294 -18 889 179 25 6 chr13 16133279 16133441 -103611457 - FRAM SINE Alu -1 165 1 1692 158 10 17 chr13 16133965 16134262 -103610636 - AluSx SINE Alu -17 295 1 342 237 118 77 chr13 16134274 16134443 -103610455 - MIR SINE MIR -13 249 74 883 194 0 0 chr13 16134663 16134823 -103610075 + AluJb SINE Alu 139 298 -14 1929 111 35 3 chr13 16134863 16135151 -103609747 - AluSq SINE Alu -16 297 1 2046 106 0 14 chr13 16135412 16135705 -103609193 - AluSg SINE Alu -21 289 1 1205 189 62 38 chr13 16136815 16136974 -103607924 - AluJo SINE Alu -9 303 132 2320 80 0 3 chr13 16136974 16137274 -103607624 - AluSg SINE Alu -11 299 1 1205 189 62 38 chr13 16137274 16137405 -103607493 - AluJo SINE Alu -180 132 6 2000 125 0 0 chr13 16137437 16137726 -103607172 - AluSx SINE Alu -14 298 10 1907 131 0 3 chr13 16138104 16138394 -103606504 - AluSx SINE Alu -15 297 9 1109 154 0 10 chr13 16138801 16138996 -103605902 - AluSg/x SINE Alu 0 310 118 2204 92 0 10 chr13 16139126 16139430 -103605468 - AluSx SINE Alu -11 301 1 2402 55 3 0 chr13 16139656 16139948 -103604950 - AluY SINE Alu -18 293 1 1668 105 158 0 chr13 16140196 16140462 -103604436 - MER51B LTR ERV1 -69 308 1 1599 135 0 4 chr13 16140474 16140703 -103604195 - MER51B-int LTR ERV1 -11 7805 7578 1046 98 0 46 chr13 16140704 16140825 -103604073 - MER51B-int LTR ERV1 -1565 6251 6139 2124 95 7 7 chr13 16140825 16141131 -103603767 - AluY SINE Alu -4 307 2 1046 98 0 46 chr13 16141131 16141183 -103603715 - MER51B-int LTR ERV1 -1677 6139 6086 2045 98 21 3 chr13 16141185 16141471 -103603427 + AluSg SINE Alu 1 291 -19 463 127 0 0 chr13 16141479 16141550 -103603348 - MER51B-int LTR ERV1 -4616 3200 3130 266 86 0 0 chr13 16141542 16141577 -103603321 - MER51B-int LTR ERV1 -7781 35 1 * 959 99 106 7 chr13 16141577 16141728 -103603170 - MER51B LTR ERV1 0 377 212 2024 113 7 3 chr13 16141734 16142025 -103602873 - AluSx SINE Alu -20 292 1 502 278 40 30 chr13 16142096 16142340 -103602558 - L2 LINE L2 -1011 2303 1988 2122 114 7 0 chr13 16142374 16142672 -103602226 - AluSq SINE Alu -13 300 1 1713 175 0 9 chr13 16142714 16143029 -103601869 - AluJb SINE Alu 0 312 1 2268 52 45 0 chr13 16143240 16143526 -103601372 + AluSx SINE Alu 1 299 -13 2178 106 6 3 chr13 16143594 16143906 -103600992 + AluSq SINE Alu 1 313 0 23 0 0 0 chr13 16143996 16144019 -103600879 + AT_rich Low_complexity Low_complexity 1 23 0 1236 170 48 65 chr13 16144450 16144676 -103600222 + AluJb SINE Alu 1 222 -90 2069 112 7 7 chr13 16144676 16144979 -103599919 - AluSq SINE Alu -10 303 1 1236 170 48 65 chr13 16144979 16145046 -103599852 + AluJb SINE Alu 222 289 -23 1863 140 0 7 chr13 16145094 16145416 -103599482 + AluSg SINE Alu 1 310 0 410 258 11 0 chr13 16145425 16145514 -103599384 + AluJ/FLAM SINE Alu 1 90 -212 205 252 102 88 chr13 16145616 16145763 -103599135 - L2 LINE L2 -1 3312 3164 2216 85 0 3 chr13 16145910 16146204 -103598694 - AluY SINE Alu -18 293 1 181 333 62 21 chr13 16146267 16146363 -103598535 + MIR SINE MIR 12 111 -151 2166 88 10 0 chr13 16146914 16147208 -103597690 + AluSp SINE Alu 4 300 -13 1182 126 0 11 chr13 16147519 16147710 -103597188 - AluSg/x SINE Alu -1 311 123 1084 101 42 18 chr13 16148180 16148348 -103596550 + AluSq SINE Alu 133 304 -9 1863 132 0 39 chr13 16148436 16148609 -103596289 - AluSx SINE Alu -13 299 142 1948 124 0 20 chr13 16148609 16148915 -103595983 - AluSx SINE Alu -12 300 1 1863 132 0 39 chr13 16148915 16149052 -103595846 - AluSx SINE Alu -170 142 1 210 333 20 50 chr13 16149077 16149176 -103595722 - MER5A DNA MER1_type 0 189 94 181 322 138 0 chr13 16149326 16149413 -103595485 - L2 LINE L2 0 3272 3174 1949 139 6 19 chr13 16149732 16150048 -103594850 - AluSx SINE Alu 0 312 1 1690 183 7 3 chr13 16150349 16150639 -103594259 + AluJo SINE Alu 1 291 -21 232 249 97 48 chr13 16150688 16150853 -103594045 - L1MC/D LINE L1 -1973 5835 5663 2211 91 7 0 chr13 16150854 16151152 -103593746 - AluSp SINE Alu -13 300 1 1704 127 90 0 chr13 16151270 16151537 -103593361 - AluSx SINE Alu -21 291 1 1959 120 0 13 chr13 16151545 16151844 -103593054 - AluSg SINE Alu -1 309 15 986 86 0 0 chr13 16151846 16151985 -103592913 + AluSc SINE Alu 171 309 0 1681 87 0 4 chr13 16152130 16152360 -103592538 + AluY SINE Alu 70 298 -13 1674 131 8 4 chr13 16152660 16152920 -103591978 - AluSx SINE Alu -27 285 25 2361 101 0 0 chr13 16153117 16153424 -103591474 + AluSg SINE Alu 1 307 -3 800 191 0 7 chr13 16153698 16153845 -103591053 + FRAM SINE Alu 20 165 -11 2268 81 0 0 chr13 16153858 16154142 -103590756 - AluSp SINE Alu -17 296 13 24 32 0 0 chr13 16154764 16154795 -103590103 + AT_rich Low_complexity Low_complexity 1 31 0 1909 155 7 0 chr13 16155226 16155523 -103589375 - AluSx SINE Alu -13 299 1 865 114 16 0 chr13 16155523 16155646 -103589252 - AluJb SINE Alu -175 137 13 379 120 160 27 chr13 16155703 16155801 -103589097 - AluS SINE Alu -242 57 1 2021 136 0 0 chr13 16155843 16156130 -103588768 - AluSx SINE Alu -25 287 1 2227 105 3 0 chr13 16156806 16157101 -103587797 + AluSx SINE Alu 1 296 -16 2520 44 3 0 chr13 16157621 16157918 -103586980 - AluSp SINE Alu -15 298 1 608 250 81 17 chr13 16157926 16158098 -103586800 + MER5A DNA MER1_type 7 189 0 22 0 0 0 chr13 16158098 16158120 -103586778 + AT_rich Low_complexity Low_complexity 1 22 0 2054 107 17 10 chr13 16158214 16158514 -103586384 - AluSq SINE Alu -11 302 1 858 181 100 35 chr13 16158654 16158914 -103585984 + L1MC4a LINE L1 6161 6437 -1371 1044 177 45 36 chr13 16158940 16159053 -103585845 - MER2 DNA MER2_type -4 341 231 2431 70 3 0 chr13 16159053 16159354 -103585544 - AluY SINE Alu -9 302 1 1044 177 45 36 chr13 16159354 16159460 -103585438 - MER2 DNA MER2_type -114 231 120 * 1111 161 92 9 chr13 16159458 16159676 -103585222 - MER2 DNA MER2_type -109 236 1 429 180 170 160 chr13 16159676 16159890 -103585008 + L1MC4 LINE L1 6479 6698 -1344 1604 173 14 32 chr13 16159890 16160174 -103584724 - AluJo SINE Alu -30 282 4 429 180 170 160 chr13 16160174 16160259 -103584639 + L1MC4 LINE L1 6698 6781 -1261 2188 189 78 69 chr13 16160260 16160725 -103584173 + L1MC4a LINE L1 7107 7566 -242 2191 110 0 0 chr13 16160725 16161007 -103583891 + 7SLRNA srpRNA srpRNA 20 301 -19 221 83 28 0 chr13 16161007 16161043 -103583855 + (CAAA)n Simple_repeat Simple_repeat 2 38 0 2188 189 78 69 chr13 16161043 16161216 -103583682 + L1MC4a LINE L1 7565 7752 -56 2446 81 0 0 chr13 16161269 16161578 -103583320 - AluY SINE Alu -2 309 1 1183 251 17 14 chr13 16161850 16162137 -103582761 + AluJo SINE Alu 1 288 -14 250 161 280 0 chr13 16162289 16162382 -103582516 - Charlie1 DNA MER1_type -6 2755 2637 1330 205 3 53 chr13 16162384 16162439 -103582459 + AluJo SINE Alu 1 57 -255 2056 132 3 3 chr13 16162439 16162734 -103582164 + AluSx SINE Alu 1 295 -17 1330 205 3 53 chr13 16162734 16162981 -103581917 + AluJo SINE Alu 57 288 -24 1761 129 0 50 chr13 16162991 16163270 -103581628 + AluSx SINE Alu 3 267 -45 2342 56 7 0 chr13 16163323 16163610 -103581288 + AluY SINE Alu 3 291 -20 2114 120 3 0 chr13 16164110 16164411 -103580487 - AluSq SINE Alu -11 302 1 1139 114 0 13 chr13 16164423 16164612 -103580286 - AluSg/x SINE Alu 0 310 132 2220 117 0 0 chr13 16164612 16164921 -103579977 - AluSx SINE Alu -3 309 1 207 354 12 12 chr13 16164939 16165021 -103579877 - L2 LINE L2 -6 3266 3185 981 194 67 121 chr13 16165472 16165653 -103579245 - AluJb SINE Alu -4 298 140 2147 129 0 7 chr13 16165653 16165962 -103578936 - AluSx SINE Alu -5 307 1 981 194 67 121 chr13 16165962 16166095 -103578803 - AluJb SINE Alu -162 140 1 344 348 106 18 chr13 16166126 16166399 -103578499 - L1MC4a LINE L1 -1907 5901 5605 2241 113 3 0 chr13 16166484 16166795 -103578103 - AluSx SINE Alu 0 312 1 637 246 64 6 chr13 16166828 16166999 -103577899 + MER46C DNA MER2_type 69 249 -89 693 181 88 113 chr13 16167568 16167726 -103577172 - MER46A DNA MER2_type -2499 232 79 1636 160 14 18 chr13 16167726 16168032 -103576866 + AluJb SINE Alu 1 305 0 693 181 88 113 chr13 16168032 16168110 -103576788 - MER46A DNA MER2_type -2652 79 1 1959 130 43 0 chr13 16168466 16168765 -103576133 - AluSx SINE Alu 0 312 1 337 199 121 28 chr13 16169574 16169715 -103575183 - L1MC5 LINE L1 -118 7843 7690 2340 101 0 0 chr13 16169890 16170186 -103574712 - AluSx SINE Alu -16 296 1 27 49 0 0 chr13 16170523 16170564 -103574334 + AT_rich Low_complexity Low_complexity 1 41 0 423 0 0 0 chr13 16170954 16171001 -103573897 + (TG)n Simple_repeat Simple_repeat 2 48 0 2335 113 0 0 chr13 16172020 16172329 -103572569 - AluSq SINE Alu -4 309 1 615 183 122 0 chr13 16172702 16172817 -103572081 - FLAM_A SINE Alu -4 129 1 276 318 81 52 chr13 16172966 16173139 -103571759 - MER5B DNA MER1_type 0 178 1 982 187 43 66 chr13 16173283 16173540 -103571358 - AluJo SINE Alu -39 273 23 446 178 28 161 chr13 16173757 16173805 -103571093 + MER58B DNA MER1_type 186 239 -2181 206 32 32 0 chr13 16173805 16173836 -103571062 + (TTTTG)n Simple_repeat Simple_repeat 3 34 0 446 178 28 161 chr13 16173836 16173967 -103570931 + MER58B DNA MER1_type 239 341 0 2080 104 0 48 chr13 16174250 16174413 -103570485 - AluSg SINE Alu -16 294 151 2286 90 3 7 chr13 16174413 16174723 -103570175 - AluSc SINE Alu 0 309 1 2080 104 0 48 chr13 16174723 16174868 -103570030 - AluSg SINE Alu -159 151 1 26 0 0 0 chr13 16176297 16176323 -103568575 + AT_rich Low_complexity Low_complexity 1 26 0 2090 117 0 4 chr13 16176332 16176613 -103568285 - AluSx SINE Alu -32 280 1 2224 119 0 0 chr13 16176619 16176929 -103567969 - AluSq SINE Alu -3 310 1 1673 162 14 24 chr13 16176934 16177224 -103567674 - AluJo SINE Alu -23 289 3 25 31 0 0 chr13 16178133 16178165 -103566733 + AT_rich Low_complexity Low_complexity 1 32 0 684 160 0 17 chr13 16179463 16179582 -103565316 + FLAM_A SINE Alu 5 121 -12 586 157 19 9 chr13 16179974 16180082 -103564816 + FLAM_A SINE Alu 1 109 -33 22 0 0 0 chr13 16180088 16180110 -103564788 + AT_rich Low_complexity Low_complexity 1 22 0 4460 176 40 5 chr13 16180162 16181033 -103563865 - L1MC1 LINE L1 -17 6316 5415 689 257 7 0 chr13 16181392 16181544 -103563354 - FRAM SINE Alu -23 153 1 1908 130 10 30 chr13 16181554 16181713 -103563185 - AluSx SINE Alu -18 294 142 2105 125 3 3 chr13 16181713 16182018 -103562880 - AluSx SINE Alu -7 305 1 1908 130 10 30 chr13 16182018 16182158 -103562740 - AluSx SINE Alu -170 142 1 248 146 0 0 chr13 16182362 16182410 -103562488 - Alu SINE Alu 0 299 252 861 121 0 0 chr13 16182410 16182534 -103562364 - AluSq/x SINE Alu -189 124 1 1163 150 0 5 chr13 16183208 16183395 -103561503 - MER46B DNA MER2_type -3 233 48 2286 70 0 3 chr13 16183399 16183685 -103561213 - AluY SINE Alu -1 310 26 678 203 16 0 chr13 16183704 16183827 -103561071 - FLAM_C SINE Alu -7 126 2 857 161 27 0 chr13 16183831 16183980 -103560918 - MER46B DNA MER2_type -183 53 26 300 206 99 84 chr13 16184191 16184322 -103560576 - Charlie1a DNA MER1_type -6 1449 1317 901 264 179 11 chr13 16184393 16184647 -103560251 - Charlie1a DNA MER1_type -1547 1214 1004 1802 178 16 0 chr13 16184647 16184950 -103559948 + AluJb SINE Alu 1 308 -4 901 264 179 11 chr13 16184950 16185131 -103559767 - Charlie1a DNA MER1_type -1757 1004 706 * 1179 272 80 56 chr13 16185125 16185665 -103559233 - Charlie1a DNA MER1_type -902 553 1 186 43 0 0 chr13 16185873 16185896 -103559002 + (T)n Simple_repeat Simple_repeat 1 23 0 547 211 18 0 chr13 16186000 16186109 -103558789 + MIR SINE MIR 64 174 -88 1997 119 0 45 chr13 16187584 16187776 -103557122 - AluSq SINE Alu -17 296 122 2435 80 0 6 chr13 16187776 16188087 -103556811 - AluY SINE Alu -2 309 1 1997 119 0 45 chr13 16188087 16188204 -103556694 - AluSq SINE Alu -191 122 1 1738 168 7 10 chr13 16188301 16188599 -103556299 + AluJo SINE Alu 1 297 -15 21 71 0 0 chr13 16189559 16189601 -103555297 + AT_rich Low_complexity Low_complexity 1 42 0 1750 169 17 3 chr13 16190262 16190558 -103554340 - AluJo SINE Alu -9 303 4 23 0 0 0 chr13 16190992 16191015 -103553883 + AT_rich Low_complexity Low_complexity 1 23 0 21 36 0 0 chr13 16192080 16192108 -103552790 + AT_rich Low_complexity Low_complexity 1 28 0 2279 85 3 7 chr13 16193934 16194229 -103550669 - AluSg SINE Alu -16 294 1 22 35 0 0 chr13 16194582 16194611 -103550287 + AT_rich Low_complexity Low_complexity 1 29 0 27 0 0 0 chr13 16194694 16194721 -103550177 + AT_rich Low_complexity Low_complexity 1 27 0 308 268 36 18 chr13 16194917 16195029 -103549869 - MER104 DNA Tc2 -56 124 11 23 78 0 0 chr13 16198660 16198711 -103546187 + AT_rich Low_complexity Low_complexity 1 51 0 230 311 14 0 chr13 16199728 16199802 -103545096 - L1MC4 LINE L1 -152 7890 7816 338 169 15 15 chr13 16200173 16200238 -103544660 + AluJo SINE Alu 71 135 -167 180 77 0 0 chr13 16201119 16201145 -103543753 + (TTTTTA)n Simple_repeat Simple_repeat 4 29 0 236 279 23 35 chr13 16201977 16202063 -103542835 - L2 LINE L2 0 3313 3229 757 220 57 17 chr13 16202113 16202290 -103542608 - MER5A DNA MER1_type -1 188 5 351 65 0 0 chr13 16202908 16202954 -103541944 + (TG)n Simple_repeat Simple_repeat 1 46 0 22 0 0 0 chr13 16203987 16204009 -103540889 + AT_rich Low_complexity Low_complexity 1 22 0 302 241 11 0 chr13 16204697 16204784 -103540114 + Charlie5 DNA MER1_type 26 113 -2499 * 1188 184 136 9 chr13 16204775 16205106 -103539792 + Charlie5 DNA MER1_type 2243 2615 0 231 167 0 0 chr13 16205248 16205290 -103539608 + (TATG)n Simple_repeat Simple_repeat 1 42 0 2715 39 0 0 chr13 16205292 16205600 -103539298 - AluY SINE Alu -3 308 1 23 0 0 0 chr13 16205884 16205907 -103538991 + AT_rich Low_complexity Low_complexity 1 23 0 397 284 89 78 chr13 16206916 16207033 -103537865 + L2 LINE L2 2593 2707 -607 1750 146 39 0 chr13 16207033 16207313 -103537585 + AluSx SINE Alu 5 295 -17 397 284 89 78 chr13 16207313 16207477 -103537421 + L2 LINE L2 2707 2877 -437 1922 142 3 3 chr13 16207518 16207806 -103537092 - AluSx SINE Alu -24 288 1 1547 149 54 58 chr13 16207907 16208202 -103536696 - AluJo SINE Alu -17 295 2 321 260 154 0 chr13 16208368 16208491 -103536407 - L2 LINE L2 -1 3312 3171 24 0 0 0 chr13 16212211 16212235 -103532663 + AT_rich Low_complexity Low_complexity 1 24 0 2168 101 3 17 chr13 16212235 16212523 -103532375 - AluSx SINE Alu -24 288 5 444 236 61 61 chr13 16212971 16213200 -103531698 - MER106A DNA MER1_type -5 231 3 436 279 91 20 chr13 16213219 16213416 -103531482 - L2 LINE L2 -519 2795 2585 21 0 0 0 chr13 16215692 16215713 -103529185 + AT_rich Low_complexity Low_complexity 1 21 0 1376 220 54 113 chr13 16215912 16216344 -103528554 - L1ME2 LINE L1 -150 6014 5656 1857 154 0 20 chr13 16216344 16216650 -103528248 - AluJo SINE Alu 0 312 13 1376 220 54 113 chr13 16216650 16216939 -103527959 - L1ME2 LINE L1 -508 5656 5352 22 35 0 0 chr13 16217260 16217289 -103527609 + AT_rich Low_complexity Low_complexity 1 29 0 28 29 0 0 chr13 16218023 16218058 -103526840 + AT_rich Low_complexity Low_complexity 1 35 0 1873 167 10 0 chr13 16218207 16218506 -103526392 - AluJo SINE Alu -10 302 1 21 23 0 47 chr13 16219108 16219127 -103525771 + AT_rich Low_complexity Low_complexity 1 19 -22 2068 146 0 0 chr13 16219127 16219429 -103525469 + AluSx SINE Alu 1 302 -10 21 23 0 47 chr13 16219429 16219452 -103525446 + AT_rich Low_complexity Low_complexity 19 41 0 1311 214 85 25 chr13 16219665 16219923 -103524975 + MER2 DNA MER2_type 1 283 -62 1893 170 0 3 chr13 16219923 16220229 -103524669 - AluJb SINE Alu -7 305 1 1311 214 85 25 chr13 16220229 16220287 -103524611 + MER2 DNA MER2_type 283 336 -9 23 0 0 0 chr13 16220326 16220349 -103524549 + AT_rich Low_complexity Low_complexity 1 23 0 1791 180 10 0 chr13 16220388 16220683 -103524215 + AluJb SINE Alu 1 298 -14 259 289 82 30 chr13 16220895 16221030 -103523868 - Charlie7 DNA MER1_type -1 2611 2470 2556 50 3 0 chr13 16222191 16222489 -103522409 - AluY SINE Alu -12 299 1 201 273 40 71 chr13 16222744 16222843 -103522055 + MER5A DNA MER1_type 17 112 -77 400 224 131 3 chr13 16223047 16223169 -103521729 + MER5A DNA MER1_type 4 131 -47 1135 191 179 0 chr13 16226373 16226624 -103518274 - AluSx SINE Alu -16 296 1 192 77 0 0 chr13 16226917 16226943 -103517955 + (T)n Simple_repeat Simple_repeat 1 26 0 2275 92 3 0 chr13 16226999 16227293 -103517605 + AluSp SINE Alu 2 296 -17 1734 124 4 12 chr13 16228363 16228621 -103516277 + AluJb SINE Alu 42 297 -15 2125 118 10 3 chr13 16229632 16229928 -103514970 + AluSx SINE Alu 1 298 -14 868 163 7 0 chr13 16230098 16230245 -103514653 + AluSg/x SINE Alu 139 286 -26 409 269 50 50 chr13 16231227 16231368 -103513530 + L2 LINE L2 3169 3309 -4 263 196 0 0 chr13 16231385 16231431 -103513467 - MER81 DNA DNA -68 46 1 2173 209 83 6 chr13 16231700 16232232 -103512666 + L1MC1 LINE L1 5760 6332 -1 2233 96 0 0 chr13 16232280 16232562 -103512336 - AluSx SINE Alu -30 282 1 319 300 110 10 chr13 16233592 16233692 -103511206 + MIR SINE MIR 40 149 -113 1149 163 39 0 chr13 16235229 16235432 -103509466 + AluJb SINE Alu 64 274 -38 201 359 57 19 chr13 16236099 16236258 -103508640 + L2 LINE L2 3080 3244 -28 1625 161 73 4 chr13 16236902 16237175 -103507723 + AluJo SINE Alu 1 292 -20 2325 55 24 17 chr13 16237203 16237496 -103507402 + AluY SINE Alu 1 295 -16 751 224 6 6 chr13 16237968 16238124 -103506774 + Tigger1 DNA MER2_type 2 157 -2261 * 1045 124 129 16 chr13 16238113 16238307 -103506591 + Tigger1 DNA MER2_type 2202 2417 -1 777 144 30 23 chr13 16238331 16238463 -103506435 - FLAM_A SINE Alu 0 133 1 280 290 99 38 chr13 16238570 16238942 -103505956 + L1M4 LINE L1 4222 4616 -1530 2472 51 3 26 chr13 16239174 16239486 -103505412 + AluY SINE Alu 1 305 -6 1932 158 0 3 chr13 16239763 16240060 -103504838 - AluJb SINE Alu -16 296 1 344 283 147 28 chr13 16241425 16241602 -103503296 - MIR SINE MIR -56 206 9 975 105 7 7 chr13 16241855 16241998 -103502900 - AluSg/x SINE Alu -10 299 157 1112 99 0 7 chr13 16242064 16242206 -103502692 - AluSq/x SINE Alu -170 143 3 2237 102 27 0 chr13 16242299 16242594 -103502304 - AluSx SINE Alu -9 303 1 2298 100 0 3 chr13 16242663 16242964 -103501934 - AluSx SINE Alu -12 300 1 300 195 53 62 chr13 16243011 16243124 -103501774 - L1M4 LINE L1 -1806 4340 4229 993 168 12 6 chr13 16243141 16243308 -103501590 - FRAM SINE Alu -7 169 2 189 0 0 0 chr13 16243308 16243329 -103501569 + (TTTTA)n Simple_repeat Simple_repeat 4 24 0 1610 142 67 8 chr13 16243338 16243605 -103501293 - AluSq SINE Alu -28 285 3 499 208 47 0 chr13 16243628 16243757 -103501141 - L1M4 LINE L1 -1958 4188 4054 820 139 16 0 chr13 16243758 16243887 -103501011 + AluJb SINE Alu 1 131 -181 234 0 0 0 chr13 16243943 16243969 -103500929 + (TGG)n Simple_repeat Simple_repeat 1 26 0 1622 189 28 0 chr13 16243969 16244248 -103500650 - AluJo SINE Alu -25 287 1 358 268 77 72 chr13 16244333 16244476 -103500422 - L1M4 LINE L1 -2311 3835 3689 2214 114 3 0 chr13 16244476 16244775 -103500123 - AluSp SINE Alu -13 300 1 358 268 77 72 chr13 16244775 16244866 -103500032 - L1M4 LINE L1 -2457 3689 3600 2089 91 21 14 chr13 16244959 16245245 -103499653 - L1PA7 LINE L1 -2 6152 5865 12541 100 20 31 chr13 16245245 16247309 -103497589 - L1P3 LINE L1 -4369 2092 5 2123 114 0 13 chr13 16247325 16247624 -103497274 - AluSg SINE Alu -15 295 1 976 191 12 18 chr13 16247724 16247892 -103497006 - FAM SINE Alu -8 167 1 1961 135 24 3 chr13 16247895 16248191 -103496707 - AluSx SINE Alu -10 302 1 316 253 41 68 chr13 16248450 16248596 -103496302 - L1MEd LINE L1 -5958 161 20 36 0 0 0 chr13 16250820 16250856 -103494042 + AT_rich Low_complexity Low_complexity 1 36 0 29 28 0 0 chr13 16251260 16251296 -103493602 + AT_rich Low_complexity Low_complexity 1 36 0 355 298 18 30 chr13 16251477 16251645 -103493253 - L1ME LINE L1 -376 5745 5580 22 0 0 0 chr13 16251694 16251716 -103493182 + AT_rich Low_complexity Low_complexity 1 22 0 244 342 0 0 chr13 16252600 16252720 -103492178 + T-rich Low_complexity Low_complexity 1 120 0 1963 96 92 0 chr13 16253680 16253952 -103490946 - AluSg SINE Alu -13 297 1 24 0 0 0 chr13 16254455 16254479 -103490419 + AT_rich Low_complexity Low_complexity 1 24 0 321 251 132 53 chr13 16254544 16254787 -103490111 + HAL1b LINE L1 340 601 -747 190 94 62 0 chr13 16254833 16254865 -103490033 - MER5A DNA MER1_type -148 41 8 629 247 136 49 chr13 16255188 16255557 -103489341 + L1MC4a LINE L1 6120 6520 -1288 231 308 100 8 chr13 16255613 16255733 -103489165 + L1MC4 LINE L1 6870 7000 -1042 1601 180 6 29 chr13 16255892 16256208 -103488690 + AluJo SINE Alu 1 309 -3 1108 237 58 13 chr13 16256842 16257154 -103487744 - MER63C DNA MER1_type -552 378 53 2037 134 10 3 chr13 16257507 16257646 -103487252 + AluSx SINE Alu 1 138 -174 2360 95 0 16 chr13 16257646 16257961 -103486937 + AluSq SINE Alu 1 310 -3 2037 134 10 3 chr13 16257961 16258120 -103486778 + AluSx SINE Alu 138 301 -11 849 228 0 6 chr13 16258120 16258300 -103486598 + AluJb SINE Alu 134 312 0 770 189 0 0 chr13 16258772 16258899 -103485999 + FLAM_A SINE Alu 1 127 -6 262 236 112 0 chr13 16258908 16258997 -103485901 - L1ME LINE L1 -518 5603 5505 461 184 146 0 chr13 16258997 16259100 -103485798 + MER58 DNA MER1_type 1 118 -223 723 239 52 14 chr13 16259102 16259315 -103485583 - MIR SINE MIR -11 251 31 1938 142 33 3 chr13 16259316 16259619 -103485279 - AluSx SINE Alu 0 312 1 845 220 163 72 chr13 16259675 16259833 -103485065 + LTR38 LTR ERV1 1 143 -413 2355 104 0 0 chr13 16259833 16260130 -103484768 + AluSg SINE Alu 1 297 -13 845 220 163 72 chr13 16260130 16260334 -103484564 + LTR38 LTR ERV1 143 396 -160 2007 78 0 0 chr13 16260342 16260586 -103484312 - AluSx SINE Alu -13 299 56 2318 76 14 3 chr13 16260820 16261109 -103483789 - AluSc SINE Alu -17 292 1 2476 68 0 0 chr13 16261327 16261622 -103483276 - AluY SINE Alu -16 295 1 477 49 0 0 chr13 16261817 16261878 -103483020 + AluY SINE Alu 1 61 -257 338 172 180 16 chr13 16261991 16262119 -103482779 + L1MC4 LINE L1 7877 8025 -17 366 265 10 29 chr13 16262317 16262419 -103482479 - L2 LINE L2 0 3313 3214 24 32 0 0 chr13 16262634 16262665 -103482233 + AT_rich Low_complexity Low_complexity 1 31 0 1724 160 27 7 chr13 16262665 16262958 -103481940 + AluJb SINE Alu 1 299 -13 2110 98 52 33 chr13 16263294 16263662 -103481236 - THE1C LTR MaLR 0 375 1 2246 71 3 30 chr13 16263906 16264202 -103480696 - AluSg SINE Alu -22 288 1 216 345 0 0 chr13 16264207 16264265 -103480633 - L2 LINE L2 -14 3258 3201 210 277 77 0 chr13 16264451 16264516 -103480382 + L2 LINE L2 3241 3310 -3 234 150 163 25 chr13 16266898 16266978 -103477920 + L1MC4 LINE L1 7002 7172 -716 231 213 33 16 chr13 16267252 16267313 -103477585 + L1MC4 LINE L1 7498 7559 -483 1745 168 0 3 chr13 16267503 16267794 -103477104 + AluJb SINE Alu 1 290 -22 1154 150 102 88 chr13 16267827 16268101 -103476797 + AluJb SINE Alu 2 279 -33 794 100 9 0 chr13 16268101 16268211 -103476687 - THE1C LTR MaLR -3 372 262 4077 64 0 15 chr13 16268211 16268730 -103476168 - MER9 LTR ERVK 0 511 1 8008 85 19 10 chr13 16268730 16270134 -103474764 - HERVK9 LTR ERVK 0 8032 4582 1855 48 13 0 chr13 16270133 16270361 -103474537 - HERVK9 LTR ERVK -1975 3941 3711 * 14094 56 1 0 chr13 16270361 16272034 -103472864 - HERVK9 LTR ERVK -3130 2786 1113 4393 79 2 7 chr13 16272035 16272606 -103472292 - HERVK9 LTR ERVK -5348 568 1 3883 88 0 6 chr13 16272606 16273120 -103471778 - MER9 LTR ERVK 0 511 1 1429 119 40 36 chr13 16273120 16273371 -103471527 - THE1C LTR MaLR -109 266 15 688 254 69 0 chr13 16273380 16273553 -103471345 + AluJo SINE Alu 98 282 -30 223 159 0 32 chr13 16273596 16273659 -103471239 + (TA)n Simple_repeat Simple_repeat 1 61 0 1773 160 50 0 chr13 16273759 16274040 -103470858 - AluJo SINE Alu -17 295 1 2251 151 81 2 chr13 16274245 16274642 -103470256 + MSTC LTR MaLR 1 428 0 1652 147 4 4 chr13 16274678 16274937 -103469961 + MER2 DNA MER2_type 7 265 -80 1887 202 129 28 chr13 16275099 16275174 -103469724 - REP3 LTR ERV 0 562 496 1780 130 68 17 chr13 16275174 16275467 -103469431 - AluSx SINE Alu -4 308 1 1887 202 129 28 chr13 16275467 16275901 -103468997 - REP3 LTR ERV -66 496 1 607 285 39 81 chr13 16275904 16276045 -103468853 - L1M4 LINE L1 -2678 3468 3323 1763 147 67 7 chr13 16276045 16276330 -103468568 - AluJo SINE Alu -10 302 1 607 285 39 81 chr13 16276330 16276410 -103468488 - L1M4 LINE L1 -2823 3323 3241 2165 115 10 3 chr13 16276410 16276715 -103468183 - AluSx SINE Alu -5 307 1 607 285 39 81 chr13 16276715 16276899 -103467999 - L1M4 LINE L1 -2905 3241 3079 1881 165 3 7 chr13 16277294 16277597 -103467301 - AluJb SINE Alu -10 302 1 361 273 9 0 chr13 16277857 16277967 -103466931 - HAL1 LINE L1 -700 1807 1697 296 197 0 61 chr13 16277972 16278038 -103466860 - MER20 DNA MER1_type -3 216 155 386 326 60 62 chr13 16278038 16278251 -103466647 - L2 LINE L2 -481 2833 2621 1589 189 0 29 chr13 16278251 16278557 -103466341 + AluJo SINE Alu 3 299 -13 2564 63 0 0 chr13 16278563 16278865 -103466033 - AluY SINE Alu -9 302 1 386 326 60 62 chr13 16278865 16279131 -103465767 - L2 LINE L2 -698 2616 2348 2311 106 0 3 chr13 16279131 16279434 -103465464 + AluSx SINE Alu 1 302 -10 427 253 71 22 chr13 16279475 16279657 -103465241 + L1MB2 LINE L1 -723 4294966763 -6839 1453 167 38 88 chr13 16279700 16280065 -103464833 - MER31B LTR ERV1 -119 347 1 2093 239 65 32 chr13 16280425 16281025 -103463873 + L1MB2 LINE L1 801 1638 -4675 2210 144 33 22 chr13 16281025 16281385 -103463513 - THE1B LTR MaLR 0 364 1 2093 239 65 32 chr13 16281385 16281551 -103463347 + L1MB2 LINE L1 1638 1797 -4516 43874 51 6 5 chr13 16281551 16287895 -103457003 + L1PA5 LINE L1 2 6291 0 4126 199 19 59 chr13 16287886 16287900 -103456998 + L1MB2 LINE L1 4638 4651 -1756 * 1851 126 25 14 chr13 16287900 16288216 -103456682 + AluSx SINE Alu 1 319 0 4126 199 19 59 chr13 16288216 16288799 -103456099 + L1MB2 LINE L1 4651 5256 -1151 2065 97 0 91 chr13 16288799 16289119 -103455779 + AluSx SINE Alu 1 291 -21 4126 199 19 59 chr13 16289119 16289150 -103455748 + L1MB2 LINE L1 5256 5287 -1120 2238 102 3 0 chr13 16289150 16289443 -103455455 + AluSp SINE Alu 1 294 -19 4126 199 19 59 chr13 16289443 16290117 -103454781 + L1MB2 LINE L1 5287 5987 -420 2101 103 24 14 chr13 16290117 16290427 -103454471 + AluSx SINE Alu 1 312 0 4126 199 19 59 chr13 16290427 16290792 -103454106 + L1MB2 LINE L1 5987 6204 -203 2254 88 14 0 chr13 16290792 16291086 -103453812 - AluSx SINE Alu -6 306 9 4126 199 19 59 chr13 16291086 16291283 -103453615 + L1MB2 LINE L1 6204 6407 0 329 278 121 31 chr13 16291329 16291552 -103453346 - L2 LINE L2 -1040 2274 2032 408 236 56 23 chr13 16291711 16291927 -103452971 + L1ME3A LINE L1 5845 6122 -48 1690 172 19 19 chr13 16291951 16292259 -103452639 + AluJo SINE Alu 3 310 -2 791 149 0 30 chr13 16292307 16292441 -103452457 + AluJo SINE Alu 4 133 -169 540 246 105 37 chr13 16292868 16293223 -103451675 - MLT1J LTR MaLR -30 481 58 1793 167 0 14 chr13 16293406 16293700 -103451198 - AluSx SINE Alu -22 290 1 1014 171 11 27 chr13 16294326 16294513 -103450385 + AluJo SINE Alu 120 303 -9 333 230 23 0 chr13 16294518 16294605 -103450293 + L1M4 LINE L1 5024 5112 -1034 2331 171 68 16 chr13 16294765 16295249 -103449649 - LTR22 LTR ERVK 0 509 1 278 205 51 39 chr13 16295631 16295709 -103449189 - MIR SINE MIR -64 144 66 2393 67 3 0 chr13 16296024 16296308 -103448590 + AluSp SINE Alu 1 285 -28 180 0 0 0 chr13 16296311 16296331 -103448567 + (TTCA)n Simple_repeat Simple_repeat 2 21 0 2384 74 0 0 chr13 16297901 16298186 -103446712 + AluSx SINE Alu 1 285 -27 8519 49 1 0 chr13 16298259 16299224 -103445674 - LTR5 LTR ERVK -3 966 1 210 118 0 0 chr13 16299229 16299263 -103445635 + (T)n Simple_repeat Simple_repeat 1 34 0 2199 104 3 7 chr13 16299270 16299569 -103445329 + AluSq SINE Alu 1 298 -15 2379 98 0 0 chr13 16299918 16300225 -103444673 + AluSx SINE Alu 1 307 -5 865 186 14 0 chr13 16300227 16300372 -103444526 + AluJo/FRAM SINE Alu 140 286 -26 279 104 0 0 chr13 16300372 16300420 -103444478 + (CA)n Simple_repeat Simple_repeat 2 49 0 2277 113 3 3 chr13 16300512 16300822 -103444076 - AluSq SINE Alu -2 311 2 1986 117 0 66 chr13 16301191 16301296 -103443602 + AluJb SINE Alu 1 111 -201 4093 127 21 68 chr13 16301296 16302021 -103442877 - LTR8 LTR ERV1 0 691 1 1986 117 0 66 chr13 16302021 16302249 -103442649 + AluJb SINE Alu 111 312 0 2301 93 0 0 chr13 16302668 16302958 -103441940 - AluSg SINE Alu -18 292 3 1166 130 0 0 chr13 16303481 16303643 -103441255 + AluSg/x SINE Alu 137 298 -14 1856 122 7 19 chr13 16304110 16304381 -103440517 + AluSx SINE Alu 40 307 -5 5786 21 0 1 chr13 16304381 16305030 -103439868 + L1PA2 LINE L1 5507 6154 -1 1966 139 16 0 chr13 16305181 16305504 -103439394 - L1MA5 LINE L1 0 6300 5973 186 240 0 0 chr13 16305676 16305726 -103439172 + G-rich Low_complexity Low_complexity 3 52 0 21 36 0 0 chr13 16305755 16305783 -103439115 + AT_rich Low_complexity Low_complexity 1 28 0 1704 164 7 45 chr13 16305994 16306304 -103438594 - AluJo SINE Alu -14 298 1 947 227 91 43 chr13 16306327 16306651 -103438247 - MLT1L LTR MaLR -91 524 136 1356 251 40 6 chr13 16306651 16306978 -103437920 - MER58B DNA MER1_type -3 338 1 947 227 91 43 chr13 16306978 16307079 -103437819 - MLT1L LTR MaLR -479 136 41 265 326 80 64 chr13 16307298 16307485 -103437413 - L2 LINE L2 -12 3260 3071 645 284 125 50 chr13 16307653 16308156 -103436742 - LTR67 LTR ERVL -15 542 2 271 264 97 28 chr13 16308168 16308312 -103436586 - L2 LINE L2 -304 2968 2815 21 0 0 0 chr13 16308355 16308376 -103436522 + AT_rich Low_complexity Low_complexity 1 21 0 1736 154 26 4 chr13 16308396 16308668 -103436230 - AluJo SINE Alu -33 279 2 1651 173 0 67 chr13 16309321 16309651 -103435247 - AluJo SINE Alu -4 308 1 415 222 80 91 chr13 16310233 16310297 -103434601 + MIR SINE MIR 86 149 -113 2193 107 3 29 chr13 16310297 16310605 -103434293 + AluSg SINE Alu 1 300 -10 415 222 80 91 chr13 16310605 16310716 -103434182 + MIR SINE MIR 149 259 -3 590 105 0 12 chr13 16310854 16310940 -103433958 - FLAM_A SINE Alu -14 128 44 572 250 0 20 chr13 16310967 16311119 -103433779 - L2 LINE L2 -1 3312 3164 326 281 70 18 chr13 16311131 16311245 -103433653 + L2 LINE L2 3152 3271 -1 1411 179 8 23 chr13 16312799 16313061 -103431837 - AluJb SINE Alu -23 289 32 396 0 0 0 chr13 16313117 16313161 -103431737 + (CA)n Simple_repeat Simple_repeat 2 45 0 2146 143 0 0 chr13 16313821 16314128 -103430770 - AluSx SINE Alu -5 307 1 826 214 21 16 chr13 16314188 16314380 -103430518 - MIR SINE MIR -10 252 60 1899 91 47 14 chr13 16314673 16314975 -103429923 + AluY SINE Alu 1 311 0 1271 119 0 0 chr13 16314975 16315151 -103429747 + AluSg/x SINE Alu 125 300 -10 7461 118 19 16 chr13 16315312 16317379 -103427519 + L1MA1 LINE L1 4234 6302 0 955 228 122 108 chr13 16317441 16317976 -103426922 + MLT1H1 LTR MaLR 1 555 0 1700 132 19 16 chr13 16318449 16318706 -103426192 - AluJb SINE Alu -54 258 1 1351 215 21 30 chr13 16318717 16319047 -103425851 - L1ME1 LINE L1 -5 6161 5835 322 298 119 18 chr13 16319147 16319315 -103425583 + MER5A DNA MER1_type 1 185 -4 391 214 31 31 chr13 16319343 16319441 -103425457 + MIR SINE MIR 40 137 -125 486 278 38 48 chr13 16319452 16319661 -103425237 - L2 LINE L2 -1 3312 3106 625 154 34 26 chr13 16319944 16320061 -103424837 - MLT1J LTR MaLR -326 185 68 7915 35 6 3 chr13 16320430 16321861 -103423037 - L1PA4 LINE L1 -3 6152 4720 12548 31 1 0 chr13 16321861 16323335 -103421563 + L1PA4 LINE L1 3274 4749 -1397 2100 117 21 0 chr13 16323569 16323859 -103421039 + AluSx SINE Alu 1 296 -16 1695 162 179 17 chr13 16323912 16324331 -103420567 + LTR54B LTR ERV1 8 494 -4 2228 97 0 3 chr13 16324715 16325013 -103419885 - AluSx SINE Alu -15 297 1 2010 95 0 70 chr13 16325027 16325343 -103419555 - AluSx SINE Alu -18 294 1 2244 79 0 0 chr13 16325440 16325740 -103419158 - AluY SINE Alu 0 300 1 1242 219 150 27 chr13 16325936 16326302 -103418596 - MLT1G3 LTR MaLR -10 520 110 620 229 15 0 chr13 16326292 16326423 -103418475 - MER119 DNA MER1_type -277 306 174 * 787 183 100 19 chr13 16326433 16326674 -103418224 - MER2 DNA MER2_type 0 345 24 233 205 0 0 chr13 16326781 16326820 -103418078 - MER119 DNA MER1_type -538 45 7 * 993 291 160 11 chr13 16326809 16327246 -103417652 - MLT1G1 LTR MaLR -89 506 5 2190 96 0 32 chr13 16327404 16327717 -103417181 - AluY SINE Alu -8 303 1 370 279 39 8 chr13 16327733 16327862 -103417036 - L1MC5 LINE L1 -48 7913 7781 602 219 150 43 chr13 16327883 16328116 -103416782 - L1ME2 LINE L1 0 6164 5907 1086 153 34 0 chr13 16328118 16328295 -103416603 - AluSg/x SINE Alu -8 304 122 520 193 196 2 chr13 16328301 16328455 -103416443 - L1ME2 LINE L1 -273 5893 5712 2163 117 0 17 chr13 16328807 16329107 -103415791 - AluSx SINE Alu -17 295 1 1833 172 3 0 chr13 16329890 16330180 -103414718 + AluJo SINE Alu 1 291 -21 41 36 0 0 chr13 16331797 16331852 -103413046 + AT_rich Low_complexity Low_complexity 1 55 0 274 324 69 6 chr13 16332029 16332202 -103412696 + MIR SINE MIR 40 223 -39 2136 84 0 84 chr13 16332515 16332835 -103412063 - AluSg SINE Alu -17 293 1 2227 111 3 7 chr13 16332865 16333172 -103411726 - AluSq SINE Alu -7 306 1 21 0 0 0 chr13 16333339 16333360 -103411538 + AT_rich Low_complexity Low_complexity 1 21 0 23 33 0 0 chr13 16333405 16333435 -103411463 + AT_rich Low_complexity Low_complexity 1 30 0 2788 16 0 0 chr13 16333933 16334237 -103410661 + AluY SINE Alu 1 304 -7 2055 100 0 91 chr13 16336256 16336422 -103408476 - AluSq SINE Alu -14 299 176 2244 91 3 7 chr13 16336422 16336731 -103408167 - AluSg1 SINE Alu -1 308 1 2055 100 0 91 chr13 16336731 16336893 -103408005 - AluSq SINE Alu -137 176 1 2331 58 29 23 chr13 16337159 16337492 -103407406 - AluY SINE Alu 0 335 1 25 0 0 0 chr13 16338021 16338046 -103406852 + GC_rich Low_complexity Low_complexity 1 25 0 2256 177 65 0 chr13 16341758 16342142 -103402756 - LTR57 LTR ERVL -2 409 1 215 228 0 35 chr13 16342324 16342381 -103402517 - L2 LINE L2 -93 3220 3166 1245 228 4 0 chr13 16342654 16342900 -103401998 + AluJo SINE Alu 39 285 -27 2471 84 10 0 chr13 16343329 16343638 -103401260 + AluSq SINE Alu 1 312 -1 238 314 0 35 chr13 16343987 16344073 -103400825 + L2 LINE L2 3231 3313 0 292 286 152 0 chr13 16344252 16344364 -103400534 + MIR SINE MIR 124 252 -10 188 273 0 0 chr13 16344368 16344412 -103400486 + MIR SINE MIR 219 262 0 413 285 63 39 chr13 16344791 16344998 -103399900 + L1ME4a LINE L1 5615 5826 -295 2343 74 0 0 chr13 16345017 16345348 -103399550 - AluY SINE Alu 0 331 1 2428 223 48 29 chr13 16345490 16346109 -103398789 - L1ME1 LINE L1 -5 6161 5531 276 250 125 11 chr13 16346207 16346295 -103398603 + MIR SINE MIR 149 246 -16 23 0 0 0 chr13 16346553 16346576 -103398322 + AT_rich Low_complexity Low_complexity 1 23 0 24 0 0 0 chr13 16347742 16347766 -103397132 + AT_rich Low_complexity Low_complexity 1 24 0 2099 122 14 0 chr13 16347839 16348134 -103396764 - AluSx SINE Alu -13 299 1 298 261 80 0 chr13 16348278 16348366 -103396532 + MIR SINE MIR 47 141 -121 1013 165 23 6 chr13 16348481 16348657 -103396241 + AluSg/x SINE Alu 133 311 -1 434 208 15 85 chr13 16348742 16348872 -103396026 + MIR SINE MIR 87 207 -55 6128 130 37 26 chr13 16349271 16350309 -103394589 - L1PA15 LINE L1 -4 6161 5112 1977 125 10 10 chr13 16350309 16350605 -103394293 - AluSq SINE Alu -17 296 1 6128 130 37 26 chr13 16350605 16350793 -103394105 - L1PA15 LINE L1 -1053 5112 4928 28 29 0 0 chr13 16351461 16351496 -103393402 + AT_rich Low_complexity Low_complexity 1 35 0 533 278 211 30 chr13 16351670 16351696 -103393202 - L1MC4a LINE L1 -1897 5911 5891 219 114 0 0 chr13 16351696 16351731 -103393167 + (TA)n Simple_repeat Simple_repeat 2 36 0 533 278 211 30 chr13 16351731 16352074 -103392824 - L1MC4a LINE L1 -1917 5891 5475 872 154 7 7 chr13 16352123 16352266 -103392632 - AluJo SINE Alu -169 143 1 471 230 40 43 chr13 16352309 16352647 -103392251 - HAL1 LINE L1 -1011 1496 1059 2376 112 0 0 chr13 16352652 16352964 -103391934 + AluSq SINE Alu 1 312 -1 335 114 0 0 chr13 16353035 16353079 -103391819 - Alu SINE Alu -257 44 1 367 310 33 26 chr13 16353103 16353223 -103391675 - MLT1J1 LTR MaLR -284 188 78 1580 161 3 71 chr13 16353223 16353546 -103391352 - AluJo SINE Alu -11 301 1 367 310 33 26 chr13 16353546 16353623 -103391275 - MLT1J1 LTR MaLR -394 78 3 1204 321 110 32 chr13 16353628 16354438 -103390460 - HAL1 LINE L1 -1618 889 17 462 65 0 0 chr13 16354462 16354524 -103390374 + (TG)n Simple_repeat Simple_repeat 2 63 0 1505 211 3 23 chr13 16354529 16354828 -103390070 - AluJo SINE Alu -19 293 1 183 42 0 0 chr13 16355016 16355040 -103389858 + (TTCA)n Simple_repeat Simple_repeat 1 24 0 627 213 38 27 chr13 16355095 16355359 -103389539 - L1MDa LINE L1 -3890 2650 2444 2063 146 7 0 chr13 16355359 16355661 -103389237 - AluJb SINE Alu -8 304 1 627 213 38 27 chr13 16355661 16355760 -103389138 - L1MDa LINE L1 -4096 2444 2348 1989 114 14 7 chr13 16355786 16356083 -103388815 + AluSq SINE Alu 1 299 -14 2126 117 19 10 chr13 16356089 16356396 -103388502 + AluSx SINE Alu 1 310 -2 1680 154 57 0 chr13 16356450 16356729 -103388169 - AluJo SINE Alu -17 295 1 353 166 47 24 chr13 16357047 16357132 -103387766 + MLT1E LTR MaLR 420 491 -102 820 183 21 0 chr13 16357135 16357277 -103387621 + FRAM SINE Alu 11 155 -21 522 290 100 29 chr13 16357291 16357601 -103387297 + L1ME3A LINE L1 3307 3638 -2508 843 258 34 34 chr13 16357706 16358001 -103386897 + L1ME3A LINE L1 3866 4160 -1986 1457 230 100 56 chr13 16358050 16358550 -103386348 + MLT1E LTR MaLR 70 591 -2 900 218 118 82 chr13 16358552 16358837 -103386061 + L1ME3A LINE L1 4181 4455 -1691 1990 143 0 10 chr13 16358837 16359161 -103385737 + AluSx SINE Alu 1 321 0 900 218 118 82 chr13 16359161 16359277 -103385621 + L1ME3A LINE L1 4455 4565 -1581 2040 146 3 0 chr13 16359277 16359579 -103385319 - AluSq SINE Alu -10 303 1 900 218 118 82 chr13 16359579 16359803 -103385095 + L1ME3A LINE L1 4565 4832 -1314 1918 100 123 9 chr13 16359841 16359852 -103385046 + MSTC LTR MaLR 1 9 -419 2669 98 17 3 chr13 16359852 16360211 -103384687 - THE1B LTR MaLR 0 364 1 1918 100 123 9 chr13 16360211 16360539 -103384359 + MSTC LTR MaLR 9 379 -49 443 226 111 65 chr13 16360539 16360625 -103384273 + L1ME3A LINE L1 4960 5041 -1105 2178 104 44 3 chr13 16360625 16360922 -103383976 + AluSx SINE Alu 1 309 -3 2441 71 0 0 chr13 16360922 16361219 -103383679 + AluY SINE Alu 1 297 -14 443 226 111 65 chr13 16361219 16361437 -103383461 + L1ME3A LINE L1 5040 5279 -867 2243 120 0 7 chr13 16361537 16361846 -103383052 + AluSx SINE Alu 1 307 -5 261 0 0 0 chr13 16361857 16361886 -103383012 + (CAAA)n Simple_repeat Simple_repeat 1 29 0 2364 90 3 3 chr13 16361908 16362208 -103382690 + AluSq SINE Alu 1 300 -13 555 226 165 28 chr13 16362209 16362457 -103382441 + L1P5 LINE L1 5292 5573 -583 306 243 37 7 chr13 16362458 16362594 -103382304 + (TA)n Simple_repeat Simple_repeat 1 140 0 567 275 26 0 chr13 16362711 16362900 -103381998 + L1ME3A LINE L1 5746 5939 -231 248 200 27 45 chr13 16363071 16363181 -103381717 + (TTATA)n Simple_repeat Simple_repeat 3 110 0 2087 119 3 14 chr13 16363506 16363830 -103381068 + AluSx SINE Alu 1 321 0 2128 124 3 3 chr13 16364210 16364517 -103380381 - AluSx SINE Alu -4 308 2 1858 157 67 6 chr13 16365072 16365417 -103379481 + MER47A DNA MER2_type 1 366 0 196 181 96 72 chr13 16365731 16365814 -103379084 + MIR SINE MIR 117 201 -61 269 250 42 0 chr13 16366383 16366455 -103378443 - L2 LINE L2 0 3272 3198 233 284 17 69 chr13 16366595 16366711 -103378187 + L2 LINE L2 3203 3312 -1 1171 149 78 136 chr13 16366812 16367209 -103377689 - MLT1A2 LTR MaLR 0 374 1 2347 104 0 0 chr13 16367496 16367794 -103377104 - AluSx SINE Alu -14 298 1 2589 140 33 13 chr13 16368149 16368607 -103376291 + L1MB4 LINE L1 5714 6180 0 1773 137 74 0 chr13 16368614 16368885 -103376013 + AluJo SINE Alu 1 291 -21 905 111 0 0 chr13 16370012 16370129 -103374769 + AluSq/x SINE Alu 1 117 -195 2116 116 7 7 chr13 16370307 16370601 -103374297 - AluSx SINE Alu -18 294 1 234 0 0 0 chr13 16370911 16370937 -103373961 + (CCA)n Simple_repeat Simple_repeat 1 26 0 830 139 16 0 chr13 16370993 16371122 -103373776 - AluJb SINE Alu -181 131 1 488 208 47 0 chr13 16371123 16371252 -103373646 + L1M4 LINE L1 4054 4188 -1958 1622 142 67 8 chr13 16371275 16371542 -103373356 + AluSq SINE Alu 3 285 -28 189 0 0 0 chr13 16371551 16371572 -103373326 + (TAAAA)n Simple_repeat Simple_repeat 4 24 0 999 168 12 6 chr13 16371572 16371739 -103373159 + FRAM SINE Alu 2 169 -7 23 33 0 0 chr13 16371877 16371907 -103372991 + AT_rich Low_complexity Low_complexity 1 30 0 2132 114 0 7 chr13 16371916 16372213 -103372685 + AluSx SINE Alu 1 295 -17 1996 82 0 0 chr13 16372447 16372691 -103372207 + AluSx SINE Alu 56 299 -13 2015 113 0 3 chr13 16373523 16373805 -103371093 + AluSx SINE Alu 1 281 -31 518 83 0 0 chr13 16373879 16373951 -103370947 - LTR5 LTR ERVK 0 969 898 1871 157 10 0 chr13 16374662 16374955 -103369943 - AluSx SINE Alu -16 296 1 189 0 0 0 chr13 16376533 16376554 -103368344 + (TGGA)n Simple_repeat Simple_repeat 1 21 0 2301 93 0 0 chr13 16377980 16378270 -103366628 + AluSg SINE Alu 3 292 -18 901 157 6 35 chr13 16378687 16378859 -103366039 - AluJb SINE Alu 0 312 146 26 30 0 0 chr13 16378867 16378900 -103365998 + AT_rich Low_complexity Low_complexity 1 33 0 1734 140 74 0 chr13 16379635 16379906 -103364992 - AluJo SINE Alu -21 291 1 1308 155 52 16 chr13 16379913 16380165 -103364733 - L1MB4 LINE L1 0 6180 5920 2287 307 42 22 chr13 16380265 16381562 -103363336 - L1M2c LINE L1 -5294 1495 752 26 30 0 0 chr13 16382731 16382764 -103362134 + AT_rich Low_complexity Low_complexity 1 33 0 1482 158 8 15 chr13 16382886 16383145 -103361753 + L1PA15 LINE L1 5905 6161 -4 394 244 0 76 chr13 16383544 16383675 -103361223 - MIR SINE MIR -55 207 87 654 223 25 69 chr13 16383746 16383948 -103360950 - AluSg/x SINE Alu 0 312 120 396 0 0 0 chr13 16384466 16384510 -103360388 + (TG)n Simple_repeat Simple_repeat 2 45 0 1342 191 8 23 chr13 16384566 16384828 -103360070 + AluJb SINE Alu 32 289 -23 7360 29 2 4 chr13 16385360 16386362 -103358536 + L1PA2 LINE L1 5111 6113 -42 188 111 28 0 chr13 16386623 16386659 -103358239 + (CATA)n Simple_repeat Simple_repeat 2 38 0 1540 212 0 3 chr13 16387576 16387882 -103357016 + AluSq SINE Alu 1 305 -8 11810 75 3 3 chr13 16388038 16389629 -103355269 + L1P LINE L1 3813 5403 -743 1836 110 92 4 chr13 16392119 16392392 -103352506 + AluSg SINE Alu 1 297 -13 10596 37 1 0 chr13 16392938 16394220 -103350678 + L1P LINE L1 2827 4109 -2037 2153 120 0 17 chr13 16394521 16394821 -103350077 - AluSx SINE Alu -17 295 1 1847 172 3 0 chr13 16395608 16395898 -103349000 + AluJo SINE Alu 1 291 -21 12508 85 74 5 chr13 16396333 16398125 -103346773 + L1P LINE L1 1 1916 -4230 4937 213 43 13 chr13 16398249 16400040 -103344858 + L1M2 LINE L1 1617 3457 -3391 5283 42 7 2 chr13 16400140 16401239 -103343659 - L1P2 LINE L1 -336 5819 4720 * 10281 75 6 4 chr13 16401234 16402637 -103342261 + L1P LINE L1 3269 4673 -1473 824 158 32 50 chr13 16404119 16404340 -103340558 + L1MA5A LINE L1 6075 6291 -6 1439 194 44 11 chr13 16404347 16404667 -103340231 + L1ME LINE L1 5269 5599 -567 1555 264 60 9 chr13 16404673 16405108 -103339790 + L1MCa LINE L1 22 478 -5948 359 192 20 50 chr13 16405125 16405224 -103339674 + L1MCa LINE L1 443 538 -5888 4063 118 5 0 chr13 16405462 16406054 -103338844 + Tigger1 DNA MER2_type 588 1182 -1236 5816 238 34 28 chr13 16406055 16407578 -103337320 + L1 LINE L1 14 1380 -5409 318 26 0 0 chr13 16408972 16409011 -103335887 + (CA)n Simple_repeat Simple_repeat 1 39 0 2228 119 0 0 chr13 16410728 16411022 -103333876 + AluSg SINE Alu 1 294 -16 643 229 68 71 chr13 16411524 16411847 -103333051 - L1MC4 LINE L1 -678 7364 7043 504 283 82 80 chr13 16412190 16412728 -103332170 - L1MEd LINE L1 -4900 1219 681 365 167 12 48 chr13 16412792 16412876 -103332022 - MER94 DNA DNA -48 86 6 422 226 13 69 chr13 16413006 16413165 -103331733 - MER57A LTR ERV1 -4 399 250 2587 198 41 68 chr13 16413289 16413669 -103331229 + L1 LINE L1 3314 3703 -3085 2128 79 7 7 chr13 16413669 16413944 -103330954 + L1PA5 LINE L1 5860 6150 -4 2587 198 41 68 chr13 16413944 16414466 -103330432 + L1 LINE L1 3703 4192 -2596 2170 158 10 5 chr13 16414472 16414859 -103330039 + Tigger1 DNA MER2_type 2029 2417 -1 199 167 30 0 chr13 16414864 16414930 -103329968 + (TA)n Simple_repeat Simple_repeat 1 68 0 1041 159 36 36 chr13 16415739 16415934 -103328964 - AluJb SINE Alu -117 195 1 380 193 202 0 chr13 16415934 16416048 -103328850 - L1MB8 LINE L1 -269 5909 5773 1907 104 57 13 chr13 16416059 16416375 -103328523 - L1MA4A LINE L1 0 6303 5974 986 94 8 0 chr13 16416376 16416503 -103328395 - AluSq/x SINE Alu -184 128 1 5459 102 28 15 chr13 16416796 16418295 -103326603 - L1PA15 LINE L1 -8 6157 4675 308 309 115 36 chr13 16418296 16418548 -103326350 + L2 LINE L2 2487 2758 -556 310 400 24 28 chr13 16418591 16418846 -103326052 + L2 LINE L2 2839 3092 -180 563 315 90 21 chr13 16418855 16419233 -103325665 - L1MEd LINE L1 -5262 1372 969 407 187 58 79 chr13 16419449 16419588 -103325310 - L1MEd LINE L1 -5924 618 483 2280 108 16 0 chr13 16419756 16420062 -103324836 + AluSx SINE Alu 1 311 -1 1499 261 72 19 chr13 16420074 16420591 -103324307 + L1M4 LINE L1 2 545 -5997 2354 105 0 13 chr13 16420601 16420916 -103323982 + AluY SINE Alu 1 311 0 2220 197 21 0 chr13 16420953 16421389 -103323509 - MER44D DNA MER2_type -61 544 228 679 221 11 103 chr13 16421392 16421654 -103323244 + L1M4 LINE L1 1866 2103 -4543 418 283 18 27 chr13 16421685 16421904 -103322994 + L1M4 LINE L1 2287 2503 -4143 801 287 89 43 chr13 16421932 16422538 -103322360 + L1M4 LINE L1 2616 3249 -3395 3045 193 34 5 chr13 16422657 16423444 -103321454 + L1M4 LINE L1 2462 3271 -2875 1513 222 90 28 chr13 16423526 16423668 -103321230 + L1M4 LINE L1 4009 4141 -2005 180 0 0 0 chr13 16423668 16423688 -103321210 + (CAAAA)n Simple_repeat Simple_repeat 2 21 0 1513 222 90 28 chr13 16423688 16424089 -103320809 + L1M4 LINE L1 4141 4586 -1560 21815 48 45 3 chr13 16424197 16427149 -103317749 - L1P LINE L1 -3070 3076 1 2113 112 3 0 chr13 16427770 16428095 -103316803 + AluSg SINE Alu 1 326 0 203 185 0 19 chr13 16428258 16428312 -103316586 + (CATA)n Simple_repeat Simple_repeat 2 54 0 460 219 0 0 chr13 16429230 16429312 -103315586 + AluS SINE Alu 1 82 -230 3950 239 26 28 chr13 16479313 16480510 -103264388 - L1P LINE L1 -2604 3542 2348 2099 140 0 0 chr13 16480512 16480804 -103264094 + AluSg SINE Alu 1 292 -18 183 264 0 56 chr13 16483450 16483522 -103261376 + L2 LINE L2 2154 2221 -1093 2148 132 0 0 chr13 16484143 16484438 -103260460 - AluSx SINE Alu -17 295 1 1753 201 36 0 chr13 16485876 16486205 -103258693 - MER7A DNA MER2_type -7 339 1 21 0 0 0 chr13 16486877 16486898 -103258000 + AT_rich Low_complexity Low_complexity 1 21 0 3704 129 5 52 chr13 16486926 16487547 -103257351 - LTR14B LTR ERVK 0 608 17 377 297 121 18 chr13 16487642 16487807 -103257091 - MER5A DNA MER1_type 0 189 8 242 329 0 12 chr13 16487842 16487924 -103256974 - MER5A DNA MER1_type -31 158 78 2281 174 48 30 chr13 16488067 16488567 -103256331 - LTR22 LTR ERVK 0 509 1 1639 187 0 14 chr13 16488700 16488989 -103255909 + AluJo SINE Alu 1 285 -27 2128 138 0 3 chr13 16489000 16489311 -103255587 + AluSq SINE Alu 1 310 -3 420 285 65 40 chr13 16490513 16490713 -103254185 + MIR SINE MIR 48 252 -10 852 161 112 0 chr13 16491041 16491184 -103253714 - AluSc SINE Alu -16 293 135 391 244 109 0 chr13 16491251 16491370 -103253528 - Charlie7 DNA MER1_type -266 2346 2215 1096 107 0 0 chr13 16491527 16491667 -103253231 + AluSx SINE Alu 61 200 -112 602 121 0 78 chr13 16491710 16491790 -103253108 + AluSx SINE Alu 201 271 -39 428 0 0 19 chr13 16491790 16491843 -103253055 + (TAAA)n Simple_repeat Simple_repeat 3 54 0 602 121 0 78 chr13 16491843 16491878 -103253020 + AluSx SINE Alu 271 307 -3 1745 156 43 7 chr13 16491969 16492251 -103252647 - AluJo SINE Alu -19 293 2 575 163 7 118 chr13 16492275 16492410 -103252488 - AluJb SINE Alu -187 125 6 1578 85 5 5 chr13 16492488 16492688 -103252210 + AluY SINE Alu 95 294 -17 383 234 64 26 chr13 16492692 16493002 -103251896 - L1MC5 LINE L1 -302 7659 7304 2011 153 0 0 chr13 16493203 16493503 -103251395 + AluJb SINE Alu 1 300 -12 375 192 0 0 chr13 16493692 16493770 -103251128 + (TATATG)n Simple_repeat Simple_repeat 6 83 0 304 272 0 22 chr13 16493772 16493864 -103251034 + L1MC4 LINE L1 6614 6703 -1339 602 178 11 33 chr13 16493866 16494046 -103250852 + (TATATG)n Simple_repeat Simple_repeat 4 179 0 674 231 17 103 chr13 16494054 16494575 -103250323 + MER115 DNA AcHobo 71 4031 0 802 216 25 6 chr13 16495582 16495744 -103249154 - FRAM SINE Alu -14 162 1 21 0 0 0 chr13 16496138 16496159 -103248739 + AT_rich Low_complexity Low_complexity 1 21 0 504 279 62 12 chr13 16496445 16496685 -103248213 + L2 LINE L2 2033 2284 -1030 1717 143 34 4 chr13 16496711 16496976 -103247922 - AluJb SINE Alu -39 273 1 1147 272 45 32 chr13 16496976 16497685 -103247213 - L1ME LINE L1 -4823 1257 536 803 323 30 55 chr13 16497829 16498361 -103246537 - L1ME LINE L1 -5539 531 13 1817 166 0 3 chr13 16498572 16498877 -103246021 + AluJb SINE Alu 1 304 0 429 219 57 19 chr13 16499002 16499107 -103245791 + MLT1J2 LTR MaLR 3 111 -339 443 274 74 57 chr13 16499169 16499344 -103245554 + MLT1J2 LTR MaLR 238 415 -31 638 211 102 0 chr13 16499730 16499877 -103245021 + L1PA16 LINE L1 5999 6160 -6 1202 162 18 0 chr13 16500123 16500345 -103244553 - L1MA4 LINE L1 0 6300 6075 1057 214 7 65 chr13 16500416 16500724 -103244174 - L1MA10 LINE L1 -13 6321 6032 406 255 0 0 chr13 16501092 16501186 -103243712 - MIR SINE MIR -110 152 59 488 239 92 0 chr13 16501279 16501409 -103243489 - MIR SINE MIR -65 197 56 2524 44 0 0 chr13 16502855 16503149 -103241749 + AluY SINE Alu 1 294 -17 1786 177 3 3 chr13 16503573 16503878 -103241020 + AluJb SINE Alu 2 306 -6 233 279 0 15 chr13 16503888 16503956 -103240942 - MIR3 SINE MIR -32 176 110 304 182 76 0 chr13 16504022 16504088 -103240810 - MIR SINE MIR -60 148 78 1761 174 0 17 chr13 16504222 16504515 -103240383 - AluJo SINE Alu -9 303 16 464 291 55 21 chr13 16505070 16505611 -103239287 + L1MC/D LINE L1 4928 5481 -750 849 163 27 0 chr13 16505634 16505781 -103239117 + FAM SINE Alu 1 42 -7 998 111 0 7 chr13 16505829 16505964 -103238934 - AluSq/x SINE Alu -179 134 1 1800 123 93 13 chr13 16506075 16506385 -103238513 - MER1B DNA MER1_type -2 335 1 1118 131 0 0 chr13 16507134 16507294 -103237604 + FRAM SINE Alu 2 161 -15 523 187 81 8 chr13 16507494 16507617 -103237281 - L1MB4 LINE L1 -1 6179 6048 2382 91 0 19 chr13 16507884 16508202 -103236696 + AluSx SINE Alu 1 312 0 310 279 158 6 chr13 16508363 16508521 -103236377 - MIR SINE MIR -79 183 2 248 200 36 91 chr13 16508537 16508647 -103236251 - L1MB4 LINE L1 -2330 5478 5375 1680 148 7 7 chr13 16508670 16508940 -103235958 - AluJb SINE Alu -40 272 3 770 171 0 8 chr13 16508948 16509071 -103235827 - FLAM_C SINE Alu -17 126 5 22 35 0 0 chr13 16510117 16510146 -103234752 + AT_rich Low_complexity Low_complexity 1 29 0 24 67 0 0 chr13 16510322 16510367 -103234531 + AT_rich Low_complexity Low_complexity 1 45 0 261 241 93 28 chr13 16511248 16511356 -103233542 - L2 LINE L2 -1 3271 3157 893 224 91 5 chr13 16511601 16511811 -103233087 - L1ME1 LINE L1 -11 6155 5928 210 91 0 0 chr13 16512141 16512174 -103232724 + (TTTTA)n Simple_repeat Simple_repeat 4 36 0 842 144 16 171 chr13 16512474 16512779 -103232119 + LTR49 LTR ERV1 12 269 -326 398 188 25 19 chr13 16512887 16513003 -103231895 + LTR49 LTR ERV1 246 485 -254 352 203 174 80 chr13 16513026 16513164 -103231734 + LTR48 LTR ERV1 607 757 -30 2326 216 115 36 chr13 16513241 16513903 -103230995 + MER21B LTR ERV1 98 811 -52 26 82 0 0 chr13 16515186 16515247 -103229651 + GC_rich Low_complexity Low_complexity 1 61 0 1302 80 150 0 chr13 16515657 16515857 -103229041 + MER30 DNA MER1_type 1 230 0 2160 121 0 10 chr13 16516607 16516930 -103227968 - AluSx SINE Alu 0 320 1 860 159 7 0 chr13 16517042 16517180 -103227718 + L1M4 LINE L1 5342 5480 -694 1574 180 32 0 chr13 16517189 16517467 -103227431 + AluJb SINE Alu 1 287 -25 294 273 9 59 chr13 16517521 16517682 -103227216 + FRAM SINE Alu 8 135 -31 2364 108 0 0 chr13 16518640 16518945 -103225953 - AluSq SINE Alu -8 305 1 2355 109 0 0 chr13 16519872 16520175 -103224723 - AluSx SINE Alu -9 303 1 496 272 63 24 chr13 16522414 16522620 -103222278 - MIR SINE MIR -48 214 1 207 281 0 18 chr13 16522614 16522671 -103222227 + MIR SINE MIR 2 57 -205 * 195 252 118 39 chr13 16523119 16523246 -103221652 + L2 LINE L2 1429 1565 -1749 1643 125 27 116 chr13 16523375 16523710 -103221188 - AluJb SINE Alu -7 305 1 196 241 0 0 chr13 16523801 16523855 -103221043 + MIR SINE MIR 204 257 -5 732 261 336 8 chr13 16523999 16524784 -103220114 + L2 LINE L2 1587 2629 -685 764 258 104 13 chr13 16524856 16525174 -103219724 + LTR16A LTR ERVL 104 450 0 1116 280 54 19 chr13 16525198 16525812 -103219086 + L2 LINE L2 2668 3313 0 1753 180 0 10 chr13 16526228 16526522 -103218376 - AluJb SINE Alu -21 291 1 809 136 0 23 chr13 16526558 16526690 -103218208 - FLAM_A SINE Alu 0 142 14 1597 179 17 10 chr13 16527595 16527741 -103217157 + AluJo SINE Alu 1 144 -168 2438 74 0 3 chr13 16527741 16528040 -103216858 + AluY SINE Alu 1 298 -13 1597 179 17 10 chr13 16528040 16528184 -103216714 + AluJo SINE Alu 144 293 -19 216 0 0 0 chr13 16528184 16528208 -103216690 + (TA)n Simple_repeat Simple_repeat 2 25 0 2108 135 10 3 chr13 16529163 16529460 -103215438 - AluJo SINE Alu -13 299 1 565 15 0 0 chr13 16529901 16529969 -103214929 - L1PA6 LINE L1 -1 6153 6086 279 36 15 0 chr13 16529969 16530009 -103214889 + L1PA5 LINE L1 5929 5972 -182 2428 53 3 7 chr13 16530027 16530331 -103214567 - AluY SINE Alu -8 303 1 2460 77 0 0 chr13 16530333 16530644 -103214254 - AluY SINE Alu 0 311 1 189 0 0 0 chr13 16531262 16531283 -103213615 + (TG)n Simple_repeat Simple_repeat 2 22 0 1573 164 6 61 chr13 16531283 16531456 -103213442 - AluJo SINE Alu -26 286 133 2375 72 0 3 chr13 16531456 16531748 -103213150 + AluY SINE Alu 1 291 -20 1573 164 6 61 chr13 16531748 16531875 -103213023 - AluJo SINE Alu -179 133 1 10039 119 18 3 chr13 16531961 16533418 -103211480 + Tigger1 DNA MER2_type 1 1478 -940 2363 107 3 0 chr13 16533419 16533728 -103211170 + AluSq SINE Alu 1 310 -3 632 188 58 36 chr13 16533746 16533884 -103211014 + FRAM SINE Alu 20 160 -16 6096 125 21 2 chr13 16533884 16534814 -103210084 + Tigger1 DNA MER2_type 1471 2418 0 376 325 47 0 chr13 16534834 16535003 -103209895 - L1ME3A LINE L1 -288 5882 5706 1433 234 6 6 chr13 16535019 16535331 -103209567 - AluJo SINE Alu 0 312 1 1039 118 0 0 chr13 16535331 16535466 -103209432 - AluSq/x SINE Alu -177 135 1 339 249 0 4 chr13 16535473 16535578 -103209320 - L1ME3A LINE L1 -803 5361 5259 273 280 43 11 chr13 16535591 16535684 -103209214 + MIR SINE MIR 47 142 -120 1744 158 0 21 chr13 16535733 16536012 -103208886 - AluJo SINE Alu -39 273 1 2447 77 0 0 chr13 16536454 16536752 -103208146 - AluY SINE Alu -13 298 1 237 263 60 30 chr13 16536880 16537013 -103207885 - L1ME3A LINE L1 -1082 5064 4928 296 273 10 10 chr13 16537188 16537287 -103207611 - L1ME3A LINE L1 -1499 4647 4549 699 186 0 0 chr13 16537704 16537822 -103207076 - FLAM_C SINE Alu -15 118 1 389 281 29 41 chr13 16538202 16538444 -103206454 + L1ME4a LINE L1 5714 5952 -169 269 111 0 0 chr13 16538453 16538498 -103206400 + FLAM_A SINE Alu 89 133 0 1948 131 0 39 chr13 16538513 16538819 -103206079 + AluSx SINE Alu 1 294 -18 2422 72 0 0 chr13 16538823 16539116 -103205782 + AluY SINE Alu 2 294 -17 2419 77 3 0 chr13 16539123 16539422 -103205476 + AluSc SINE Alu 1 300 -9 233 163 0 0 chr13 16539474 16539517 -103205381 - L2 LINE L2 -248 3065 3023 476 279 114 0 chr13 16539827 16539967 -103204931 - MER63 DNA MER1_type -276 786 5 435 155 70 120 chr13 16540010 16540152 -103204746 + L1ME4a LINE L1 5985 6119 -2 2118 132 0 0 chr13 16540521 16540808 -103204090 - AluSx SINE Alu -25 287 1 3151 165 79 27 chr13 16540814 16541470 -103203428 - L1MB5 LINE L1 0 6174 5485 2247 117 0 0 chr13 16542764 16543064 -103201834 + AluSg SINE Alu 1 300 -10 206 286 62 27 chr13 16543345 16543457 -103201441 + L2 LINE L2 3150 3265 -7 2007 162 24 26 chr13 16543649 16544032 -103200866 + MLT1B LTR MaLR 1 382 -8 23 0 0 0 chr13 16544322 16544345 -103200553 + AT_rich Low_complexity Low_complexity 1 23 0 310 193 59 82 chr13 16544467 16544602 -103200296 - L1ME4a LINE L1 -48 6073 5942 561 160 0 114 chr13 16544734 16544865 -103200033 - FLAM_A SINE Alu -13 120 5 24 53 0 0 chr13 16545099 16545137 -103199761 + AT_rich Low_complexity Low_complexity 1 38 0 868 128 45 0 chr13 16545175 16545308 -103199590 + FLAM_C SINE Alu 3 141 -2 181 300 29 29 chr13 16545867 16545937 -103198961 + MIR3 SINE MIR 87 156 -52 23 0 0 0 chr13 16546193 16546216 -103198682 + AT_rich Low_complexity Low_complexity 1 23 0 190 207 244 0 chr13 16547387 16547469 -103197429 - MIR SINE MIR -71 137 36 297 0 0 0 chr13 16548404 16548437 -103196461 + (TG)n Simple_repeat Simple_repeat 1 33 0 229 252 83 9 chr13 16549093 16549206 -103195692 + MIR SINE MIR 45 170 -66 3712 57 4 13 chr13 16551614 16552091 -103192807 - L1PA7 LINE L1 0 6154 5682 368 293 135 40 chr13 16552812 16553160 -103191738 + L1ME4a LINE L1 5504 5884 -237 657 203 27 20 chr13 16553964 16554112 -103190786 - L1PA16 LINE L1 0 6166 6018 3799 166 13 21 chr13 16554343 16555106 -103189792 - L1MA3 LINE L1 0 6305 5549 24 32 0 0 chr13 16555983 16556014 -103188884 + AT_rich Low_complexity Low_complexity 1 31 0 739 171 0 0 chr13 16556814 16556931 -103187967 + FLAM_A SINE Alu 1 117 -16 354 339 18 0 chr13 16558541 16558653 -103186245 - L2 LINE L2 -259 3054 2941 184 167 48 24 chr13 16560438 16560480 -103184418 + MER5A DNA MER1_type 43 85 -104 * 351 189 156 11 chr13 16560464 16560554 -103184344 - MER5A DNA MER1_type -77 112 10 327 25 0 0 chr13 16562736 16562776 -103182122 + (TG)n Simple_repeat Simple_repeat 1 40 0 463 188 21 0 chr13 16563273 16563369 -103181529 - Charlie1 DNA MER1_type -45 2716 2619 1098 206 5 0 chr13 16564841 16565050 -103179848 + AluJb SINE Alu 97 306 -6 2044 121 0 0 chr13 16565389 16565662 -103179236 + AluSx SINE Alu 1 273 -39 490 181 0 0 chr13 16565664 16565747 -103179151 + AluJb SINE Alu 206 288 -24 949 189 0 0 chr13 16565800 16565964 -103178934 + FRAM SINE Alu 8 171 -5 3649 162 32 0 chr13 16565983 16566644 -103178254 + L1MB3 LINE L1 5472 6153 -30 579 190 50 25 chr13 16568091 16568212 -103176686 - AluJb SINE Alu -15 297 174 1098 206 5 0 chr13 16568388 16568597 -103176301 + AluJb SINE Alu 97 306 -6 2244 124 0 0 chr13 16568936 16569243 -103175655 + AluSx SINE Alu 1 307 -5 24 32 0 0 chr13 16569825 16569856 -103175042 + AT_rich Low_complexity Low_complexity 1 31 0 1231 108 5 5 chr13 16570643 16570838 -103174060 - L1MA1 LINE L1 0 6302 6108 25 31 0 0 chr13 16571032 16571064 -103173834 + AT_rich Low_complexity Low_complexity 1 32 0 9563 219 30 20 chr13 16571073 16573781 -103171117 - L1 LINE L1 -1438 5410 2675 763 158 0 0 chr13 16573819 16573933 -103170965 - AluJo SINE Alu -21 291 178 1999 177 92 0 chr13 16573933 16574323 -103170575 + MSTB LTR MaLR 1 426 0 8418 196 18 11 chr13 16574390 16576009 -103168889 + MSTB-int LTR MaLR 22 1651 0 2081 202 52 2 chr13 16576009 16576410 -103168488 + MSTB LTR MaLR 1 421 -5 789 226 11 32 chr13 16576410 16576600 -103168298 - AluJo SINE Alu -126 186 1 1462 235 35 19 chr13 16576601 16577023 -103167875 - L1 LINE L1 -4180 2669 2241 282 73 0 0 chr13 16577027 16577068 -103167830 + (TG)n Simple_repeat Simple_repeat 2 42 0 * 402 21 0 0 chr13 16577067 16577114 -103167784 + (TA)n Simple_repeat Simple_repeat 2 48 0 298 248 142 49 chr13 16577955 16578140 -103166758 + L1ME LINE L1 5387 5588 -533 2504 273 114 40 chr13 16578671 16580110 -103164788 + L2 LINE L2 1778 3313 0 7062 23 0 1 chr13 16581297 16582119 -103162779 + L1PA4 LINE L1 5332 6152 -3 341 279 279 27 chr13 16582410 16582704 -103162194 - L2 LINE L2 -1308 2006 1639 662 269 34 19 chr13 16583499 16583707 -103161191 + MIR SINE MIR 6 216 -46 2246 98 7 0 chr13 16584050 16584346 -103160552 + AluSg SINE Alu 1 298 -12 3162 250 26 9 chr13 16584737 16585938 -103158960 + L1PA16 LINE L1 1330 2574 -4223 8472 247 39 20 chr13 16585943 16588367 -103156531 + L1PA16 LINE L1 2787 5263 -1534 1819 162 17 3 chr13 16588367 16588663 -103156235 - AluJb SINE Alu -12 300 1 8472 247 39 20 chr13 16588663 16588790 -103156108 + L1PA16 LINE L1 5263 5386 -1411 2519 184 20 2 chr13 16588790 16589280 -103155618 + L1PA16 LINE L1 6313 6811 -6 281 360 64 41 chr13 16589805 16589977 -103154921 + L2 LINE L2 2564 2739 -575 604 250 0 0 chr13 16590122 16590266 -103154632 - L1MA10 LINE L1 -11 6323 6180 1036 177 24 141 chr13 16590284 16590576 -103154322 - L1ME LINE L1 -571 5595 5367 1839 167 0 0 chr13 16590576 16590882 -103154016 + L1PB1 LINE L1 5831 6136 -15 1036 177 24 141 chr13 16590882 16591072 -103153826 - L1ME LINE L1 -799 5367 5156 7646 26 25 21 chr13 16591078 16592105 -103152793 - L1PA4 LINE L1 -8 6147 5120 744 249 61 6 chr13 16592200 16592381 -103152517 - MER58A DNA MER1_type -32 192 2 1571 226 69 24 chr13 16592406 16592857 -103152041 - L1ME LINE L1 -1947 4199 3729 3122 158 23 11 chr13 16592867 16593441 -103151457 - L1MC1 LINE L1 -19 6314 5734 1694 189 0 16 chr13 16595218 16595530 -103149368 - AluJo SINE Alu -5 307 1 430 292 112 11 chr13 16596259 16596536 -103148362 + L1M4 LINE L1 4017 4321 -1825 268 250 158 7 chr13 16596562 16596714 -103148184 + L1M4 LINE L1 4378 4552 -1594 2953 178 61 8 chr13 16596868 16597899 -103146999 - Tigger1 DNA MER2_type 0 2418 1301 289 304 80 22 chr13 16601444 16601582 -103143316 + MER5B DNA MER1_type 1 146 -32 280 293 57 0 chr13 16602161 16602318 -103142580 - L1ME LINE L1 -2402 3744 3579 414 296 76 35 chr13 16602768 16603082 -103141816 - L1ME4a LINE L1 -284 5837 5511 209 211 0 0 chr13 16604706 16604744 -103140154 + (TATATG)n Simple_repeat Simple_repeat 4 41 0 459 292 51 17 chr13 16607904 16608082 -103136816 - L2 LINE L2 -410 2904 2721 2106 83 54 0 chr13 16608741 16609019 -103135879 + AluSp SINE Alu 3 295 -18 1236 185 12 62 chr13 16609392 16609716 -103135182 - L1MB8 LINE L1 0 6178 5871 3457 136 31 4 chr13 16609748 16610262 -103134636 + MER1A DNA MER1_type 2 529 0 1963 167 83 0 chr13 16610262 16610630 -103134268 - MSTB LTR MaLR -23 403 5 590 174 82 10 chr13 16610630 16610765 -103134133 - L1MB8 LINE L1 -308 5876 5743 6435 183 37 91 chr13 16611053 16613112 -103131786 - L1MB8 LINE L1 -756 5390 3433 514 167 29 0 chr13 16613586 16613688 -103131210 - L1MA9 LINE L1 -38 6274 6170 646 297 12 6 chr13 16615273 16615438 -103129460 + FAM SINE Alu 1 166 -9 1606 200 0 20 chr13 16615457 16615752 -103129146 - AluJo SINE Alu -23 289 1 9453 106 16 6 chr13 16616326 16618570 -103126328 - L1PA8 LINE L1 -5 6167 3905 10382 104 10 3 chr13 16618690 16620322 -103124576 - L1P3 LINE L1 -1676 4785 3142 40240 35 27 0 chr13 16620882 16626868 -103118030 - L1PA2 LINE L1 -4 6151 3 11895 129 6 44 chr13 16626868 16627852 -103117046 - L1P3 LINE L1 -3304 3157 2137 2341 40 0 27 chr13 16627852 16628148 -103116750 + L1PA6 LINE L1 5865 6152 -2 11895 129 6 44 chr13 16628148 16630063 -103114835 - L1P3 LINE L1 -4324 2137 299 209 286 71 71 chr13 16630502 16630586 -103114312 + L2 LINE L2 3174 3257 -15 358 320 40 20 chr13 16632662 16632812 -103112086 + MIR3 SINE MIR 8 160 -48 4698 78 17 95 chr13 16634478 16635309 -103109589 - MER4E LTR ERV1 0 766 1 207 323 144 72 chr13 16636182 16636612 -103108286 + L2 LINE L2 2812 3272 0 2236 105 20 0 chr13 16637166 16637470 -103107428 + AluSg SINE Alu 1 310 0 225 0 0 0 chr13 16637801 16637826 -103107072 + (TTTTTA)n Simple_repeat Simple_repeat 4 28 0 1755 242 73 4 chr13 16637894 16638577 -103106321 - L1MC4 LINE L1 -149 7893 7012 2565 204 35 75 chr13 16638608 16639474 -103105424 - L1MC4 LINE L1 -6 8036 7206 2213 79 3 26 chr13 16639524 16639827 -103105071 + AluSp SINE Alu 14 309 -4 661 145 0 0 chr13 16639827 16639944 -103104954 + L1MA3 LINE L1 6145 6261 -44 414 0 0 0 chr13 16639944 16639990 -103104908 + (TA)n Simple_repeat Simple_repeat 1 46 0 25 0 0 0 chr13 16639996 16640021 -103104877 + AT_rich Low_complexity Low_complexity 1 25 0 1063 208 5 0 chr13 16640021 16640233 -103104665 - Tigger2 DNA MER2_type -2170 548 336 22 35 0 0 chr13 16643116 16643145 -103101753 + AT_rich Low_complexity Low_complexity 1 29 0 309 264 88 26 chr13 16643318 16643587 -103101311 - L1MC/D LINE L1 -751 5395 5195 12944 185 34 5 chr13 16644103 16645816 -103099082 - L1PB1 LINE L1 -5 6862 5201 387 0 0 0 chr13 16645816 16645859 -103099039 + (TTTA)n Simple_repeat Simple_repeat 2 44 0 12944 185 34 5 chr13 16645859 16648596 -103096302 - L1PB1 LINE L1 -1666 5201 1851 5610 160 24 5 chr13 16648604 16650449 -103094449 - L1PB1 LINE L1 0 6867 4994 350 198 0 0 chr13 16651220 16651301 -103093597 + L1 LINE L1 4213 4293 -1853 9418 196 6 5 chr13 16651303 16653582 -103091316 - L1PB1 LINE L1 -1820 5042 2704 1056 101 6 0 chr13 16653894 16654062 -103090836 - L1PB1 LINE L1 -4149 2714 2546 7224 185 59 6 chr13 16654162 16656413 -103088485 - L1PB1 LINE L1 -4333 2530 1 9991 148 49 3 chr13 16656425 16658210 -103086688 - L1PBa LINE L1 -4996 1867 1 300 333 101 13 chr13 16658470 16658629 -103086269 - L1M4 LINE L1 -2470 3676 3504 402 243 20 47 chr13 16659801 16659949 -103084949 + MLT1F LTR MaLR 14 157 -410 180 77 0 0 chr13 16660022 16660048 -103084850 + (TCC)n Simple_repeat Simple_repeat 2 27 0 677 220 155 22 chr13 16660054 16660277 -103084621 + MLT1F LTR MaLR 170 481 -112 263 286 0 33 chr13 16660303 16660394 -103084504 + L1M3c LINE L1 670 757 -5906 275 274 14 0 chr13 16660718 16660791 -103084107 + L1M3c LINE L1 1453 1526 -5127 1011 225 116 6 chr13 16660846 16661312 -103083586 - L1M4 LINE L1 -2831 3315 2799 4530 141 27 5 chr13 16661674 16662460 -103082438 - L1MA3 LINE L1 -2 6303 5501 361 307 123 43 chr13 16662460 16662623 -103082275 + L1M2 LINE L1 779 954 -5895 2225 119 0 3 chr13 16663005 16663308 -103081590 + AluSx SINE Alu 1 302 -10 207 0 0 0 chr13 16663743 16663766 -103081132 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 10515 208 32 7 chr13 16664725 16667143 -103077755 - L1PA15 LINE L1 -7 6158 3801 626 37 12 0 chr13 16667143 16667224 -103077674 + (TTTC)n Simple_repeat Simple_repeat 3 84 0 10515 208 32 7 chr13 16667224 16667796 -103077102 - L1PA15 LINE L1 -2364 3801 3075 2350 88 3 0 chr13 16667796 16668092 -103076806 - AluSp SINE Alu -1 312 16 10515 208 32 7 chr13 16668092 16668460 -103076438 - L1PA15 LINE L1 -3090 3075 2718 871 130 0 0 chr13 16668462 16668577 -103076321 - AluSq/x SINE Alu -196 117 3 472 274 43 37 chr13 16668730 16668894 -103076004 - L2 LINE L2 -1162 2152 1988 1860 109 76 0 chr13 16668930 16669205 -103075693 - AluSq SINE Alu -17 296 1 1661 160 34 10 chr13 16669249 16669542 -103075356 - AluJb SINE Alu -12 300 1 1904 123 41 0 chr13 16669753 16670022 -103074876 + AluSx SINE Alu 1 280 -32 2339 108 0 13 chr13 16670112 16670428 -103074470 + AluSq SINE Alu 1 312 -1 1431 168 34 48 chr13 16670991 16671212 -103073686 + AluJb SINE Alu 1 219 -93 2338 101 7 0 chr13 16671212 16671519 -103073379 - AluSq SINE Alu -4 309 1 1431 168 34 48 chr13 16671519 16671589 -103073309 + AluJb SINE Alu 219 288 -24 428 284 0 0 chr13 16671645 16671733 -103073165 + AluJ/FLAM SINE Alu 3 90 -222 278 265 114 38 chr13 16671848 16671980 -103072918 - L2 LINE L2 0 3313 3172 182 323 62 21 chr13 16672186 16672282 -103072616 + MIR SINE MIR 12 111 -151 2200 106 7 0 chr13 16672816 16673108 -103071790 + AluSp SINE Alu 2 295 -18 279 203 0 0 chr13 16673400 16673459 -103071439 + (TA)n Simple_repeat Simple_repeat 1 59 0 1161 137 0 12 chr13 16673459 16673627 -103071271 - AluSx SINE Alu -24 286 121 1193 122 0 0 chr13 16674097 16674269 -103070629 + AluSg/x SINE Alu 131 302 -7 2084 130 3 3 chr13 16674358 16674651 -103070247 - AluSx SINE Alu -19 293 1 955 143 0 0 chr13 16674655 16674788 -103070110 - AluSx SINE Alu -180 133 1 203 333 20 50 chr13 16674813 16674912 -103069986 - MER5A DNA MER1_type 0 189 94 560 161 43 0 chr13 16675480 16675573 -103069325 - AluSg/x SINE Alu -9 303 207 1862 178 0 3 chr13 16675710 16676003 -103068895 + AluJo SINE Alu 1 292 -20 320 272 95 44 chr13 16676052 16676210 -103068688 - L1MC/D LINE L1 -1973 5835 5670 2319 88 7 0 chr13 16676212 16676506 -103068392 - AluSx SINE Alu -16 296 1 1855 122 89 0 chr13 16676622 16676893 -103068005 - AluSx SINE Alu -17 295 1 1736 125 0 57 chr13 16676902 16677199 -103067699 - AluSg SINE Alu -6 304 25 225 74 0 0 chr13 16677199 16677226 -103067672 - AluSg SINE Alu -258 44 18 850 142 0 0 chr13 16677226 16677367 -103067531 + AluSc SINE Alu 166 306 -3 1734 99 0 0 chr13 16677522 16677745 -103067153 + AluY SINE Alu 72 294 -17 198 0 0 0 chr13 16678029 16678051 -103066847 + (TTAA)n Simple_repeat Simple_repeat 3 24 0 1808 113 12 4 chr13 16678051 16678308 -103066590 - AluSx SINE Alu -29 283 25 822 207 0 7 chr13 16678771 16678916 -103065982 + FRAM SINE Alu 20 163 -13 2303 106 0 0 chr13 16678932 16679234 -103065664 - AluSp SINE Alu -11 302 1 787 171 16 0 chr13 16679234 16679357 -103065541 - AluJb SINE Alu -175 137 13 368 232 65 32 chr13 16679393 16679552 -103065346 - AluS SINE Alu -245 57 1 1992 153 0 0 chr13 16679595 16679882 -103065016 - AluSx SINE Alu -25 287 1 22886 61 1 0 chr13 16680149 16682983 -103061915 + L1P LINE L1 1 2835 -3311 33853 41 2 2 chr13 16682990 16687039 -103057859 + L1P LINE L1 5 4052 -2094 720 149 0 18 chr13 16687142 16687256 -103057642 + FLAM_A SINE Alu 5 116 -17 2314 93 0 3 chr13 16687261 16687561 -103057337 - AluY SINE Alu -12 299 1 661 165 26 9 chr13 16687971 16688086 -103056812 + FLAM_A SINE Alu 1 117 -16 4895 179 37 5 chr13 16688155 16689029 -103055869 - L1MC1 LINE L1 -17 6316 5415 590 311 7 0 chr13 16689400 16689551 -103055347 - FRAM SINE Alu -24 152 1 306 0 0 0 chr13 16689553 16689587 -103055311 + (TTTA)n Simple_repeat Simple_repeat 2 35 0 1518 122 0 5 chr13 16689587 16689801 -103055097 - AluSg/x SINE Alu -29 283 71 1535 185 7 14 chr13 16689801 16690077 -103054821 + AluJo SINE Alu 17 290 -22 21 71 0 0 chr13 16691040 16691082 -103053816 + AT_rich Low_complexity Low_complexity 1 42 0 1691 168 18 3 chr13 16691743 16692029 -103052869 - AluJb SINE Alu -12 300 11 2361 72 0 7 chr13 16694751 16695055 -103049843 + AluY SINE Alu 1 302 -9 2209 117 0 0 chr13 16695678 16695987 -103048911 - AluSg SINE Alu -1 309 1 21 36 0 0 chr13 16696340 16696368 -103048530 + AT_rich Low_complexity Low_complexity 1 28 0 30 0 0 0 chr13 16696446 16696476 -103048422 + AT_rich Low_complexity Low_complexity 1 30 0 294 271 37 19 chr13 16696682 16696789 -103048109 - MER104 DNA Tc2 -61 119 11 1408 51 0 29 chr13 16697500 16697675 -103047223 + AluY SINE Alu 124 293 -18 207 88 0 0 chr13 16699249 16699283 -103045615 + (T)n Simple_repeat Simple_repeat 1 34 0 940 153 26 37 chr13 16700586 16700775 -103044123 - MLT1B LTR MaLR -203 187 1 208 320 61 48 chr13 16700776 16700923 -103043975 + L2 LINE L2 1267 1415 -1899 2244 117 0 0 chr13 16701056 16701363 -103043535 + AluSx SINE Alu 6 312 0 1438 75 0 0 chr13 16701473 16701647 -103043251 - AluSq SINE Alu -6 307 134 1874 110 0 53 chr13 16701652 16701994 -103042904 - AluSx SINE Alu 0 326 1 2161 236 75 10 chr13 16702043 16702745 -103042153 + L1ME LINE L1 3124 3871 -2275 1712 136 48 0 chr13 16702834 16703106 -103041792 - AluJb SINE Alu -27 285 1 2367 203 68 71 chr13 16703106 16703342 -103041556 + L1ME LINE L1 4571 4806 -1360 1881 133 9 59 chr13 16703342 16703666 -103041232 + AluJb SINE Alu 1 308 -4 2367 203 68 71 chr13 16703666 16703797 -103041101 + L1ME LINE L1 4806 4936 -1230 1722 155 20 30 chr13 16703797 16704101 -103040797 - AluSx SINE Alu -11 301 1 2367 203 68 71 chr13 16704101 16704113 -103040785 + L1ME LINE L1 4936 4947 -1219 2093 113 17 0 chr13 16704113 16704404 -103040494 - AluSx SINE Alu -16 296 1 2367 203 68 71 chr13 16704404 16704435 -103040463 + L1ME LINE L1 4947 4977 -1189 2245 87 0 14 chr13 16704435 16704749 -103040149 - AluSq SINE Alu 0 310 1 2367 203 68 71 chr13 16704749 16705266 -103039632 + L1ME LINE L1 4977 5490 -676 2159 104 0 29 chr13 16705266 16705399 -103039499 + AluSc SINE Alu 1 136 -173 1815 119 87 0 chr13 16705399 16705676 -103039222 + AluSg SINE Alu 1 301 -9 2159 104 0 29 chr13 16705676 16705851 -103039047 + AluSc SINE Alu 136 300 -9 482 174 56 18 chr13 16705860 16705988 -103038910 + L1ME LINE L1 5676 5813 -371 * 532 233 31 74 chr13 16705986 16706047 -103038851 - L1M4 LINE L1 -2474 3672 3610 2111 113 25 0 chr13 16706047 16706330 -103038568 - AluSx SINE Alu -22 290 1 532 233 31 74 chr13 16706330 16706499 -103038399 - L1M4 LINE L1 -2536 3610 3455 278 256 149 18 chr13 16706589 16706703 -103038195 + MLT1K LTR MaLR 87 230 -358 1767 172 7 0 chr13 16706856 16707146 -103037752 - AluJb SINE Alu -20 292 1 3137 168 99 80 chr13 16707146 16707241 -103037657 - L1MDa LINE L1 -4577 1963 1871 2476 74 3 0 chr13 16707241 16707539 -103037359 - AluSg SINE Alu -11 299 1 3137 168 99 80 chr13 16707539 16707818 -103037080 - L1MDa LINE L1 -4669 1871 1599 432 0 0 0 chr13 16707818 16707866 -103037032 + (TA)n Simple_repeat Simple_repeat 2 49 0 2011 104 0 0 chr13 16707867 16708127 -103036771 - AluSg SINE Alu -16 294 35 3137 168 99 80 chr13 16708127 16708299 -103036599 - L1MDa LINE L1 -4941 1599 1432 2324 99 0 0 chr13 16708299 16708593 -103036305 - AluSc SINE Alu -15 294 1 3137 168 99 80 chr13 16708593 16708614 -103036284 - L1MDa LINE L1 -5108 1432 1413 2102 124 0 13 chr13 16708614 16708912 -103035986 - AluSx SINE Alu -18 294 1 3137 168 99 80 chr13 16708912 16709339 -103035559 - L1MDa LINE L1 -5127 1413 945 380 71 18 0 chr13 16709704 16709760 -103035138 + (TTCC)n Simple_repeat Simple_repeat 1 57 0 212 328 0 0 chr13 16709760 16709821 -103035077 - L2 LINE L2 -9 3263 3203 266 186 29 0 chr13 16709985 16710055 -103034843 + GA-rich Low_complexity Low_complexity 3 74 0 2022 162 154 0 chr13 16711172 16711543 -103033355 - MSTA LTR MaLR 0 428 1 364 153 0 71 chr13 16711543 16711628 -103033270 - MSTA-int LTR MaLR 0 1580 1502 2252 88 0 10 chr13 16711628 16711935 -103032963 - AluY SINE Alu -7 304 1 2625 43 0 7 chr13 16712102 16712404 -103032494 - AluY SINE Alu -11 300 1 324 0 0 0 chr13 16713130 16713166 -103031732 + (CA)n Simple_repeat Simple_repeat 2 37 0 769 196 0 14 chr13 16713186 16713505 -103031393 + FLAM_C SINE Alu 3 319 0 334 302 100 4 chr13 16713336 16713530 -103031368 + HAL1 LINE L1 1105 3200 -1203 * 348 153 0 112 chr13 16714866 16714964 -103029934 + L1ME4a LINE L1 6035 6121 0 1313 176 179 3 chr13 16714970 16715266 -103029632 + MER7A DNA MER2_type 1 346 0 1136 191 120 32 chr13 16715343 16715684 -103029214 + MLT1A2 LTR MaLR 2 372 -2 536 197 0 16 chr13 16716100 16716227 -103028671 + FLAM_A SINE Alu 17 141 -1 1218 151 82 0 chr13 16716360 16716592 -103028306 + LTR23 LTR ERV1 2 252 -185 411 178 0 0 chr13 16716604 16716677 -103028221 + FLAM SINE Alu 46 118 -15 892 91 57 62 chr13 16716683 16716823 -103028075 + LTR23 LTR ERV1 245 385 -52 1962 132 0 55 chr13 16716823 16717149 -103027749 - AluSx SINE Alu -4 308 1 892 91 57 62 chr13 16717149 16717184 -103027714 + LTR23 LTR ERV1 385 419 -18 1879 82 71 0 chr13 16717185 16717467 -103027431 - AluSx SINE Alu 0 311 12 251 373 8 0 chr13 16718427 16718553 -103026345 - Charlie1 DNA MER1_type -2 2759 2633 1373 186 12 0 chr13 16718554 16718807 -103026091 + AluJo SINE Alu 41 296 -16 1540 156 62 28 chr13 16718885 16719069 -103025829 - AluJb SINE Alu -13 299 100 2217 98 21 0 chr13 16719069 16719355 -103025543 + AluY SINE Alu 1 292 -19 1540 156 62 28 chr13 16719355 16719459 -103025439 - AluJb SINE Alu -212 100 1 1034 276 60 10 chr13 16719462 16719860 -103025038 - LTR33 LTR ERVL -94 427 10 27 0 0 0 chr13 16720209 16720236 -103024662 + AT_rich Low_complexity Low_complexity 1 27 0 2158 136 3 0 chr13 16721718 16722020 -103022878 + AluSx SINE Alu 1 303 -9 1964 127 99 0 chr13 16723108 16723392 -103021506 - AluSx SINE Alu 0 312 1 1690 185 12 0 chr13 16723473 16723727 -103021171 - AluSx SINE Alu -55 257 1 396 171 14 0 chr13 16723730 16723800 -103021098 - AluJ/FRAM SINE Alu -5 297 227 2111 128 3 0 chr13 16723825 16724122 -103020776 + AluSx SINE Alu 5 302 -10 413 273 101 22 chr13 16724122 16724261 -103020637 - MER58A DNA MER1_type -33 191 42 2345 66 0 14 chr13 16724582 16724897 -103020001 - AluY SINE Alu 0 311 1 1554 176 54 7 chr13 16724897 16725176 -103019722 - AluJb SINE Alu -17 295 4 590 160 0 0 chr13 16725431 16725531 -103019367 + AluJ/FLAM SINE Alu 2 101 -211 21 0 0 0 chr13 16726799 16726820 -103018078 + AT_rich Low_complexity Low_complexity 1 21 0 488 234 64 28 chr13 16728081 16728222 -103016676 + LTR42 LTR ERVL 1 146 -349 495 152 0 0 chr13 16728222 16728301 -103016597 + AluJb SINE Alu 210 288 -24 244 131 82 0 chr13 16728312 16728373 -103016525 + T-rich Low_complexity Low_complexity 4 69 0 204 288 0 0 chr13 16730485 16730558 -103014340 + T-rich Low_complexity Low_complexity 1 73 0 205 111 74 0 chr13 16730564 16730618 -103014280 + (TA)n Simple_repeat Simple_repeat 1 58 0 2107 120 0 0 chr13 16730618 16730892 -103014006 - AluSx SINE Alu -26 286 13 1279 167 94 45 chr13 16730913 16731201 -103013697 - AluJo SINE Alu -10 302 1 2092 139 7 0 chr13 16731207 16731508 -103013390 - AluSx SINE Alu -9 303 1 799 199 165 79 chr13 16731518 16731784 -103013114 - AluJo SINE Alu -12 290 2 1248 296 60 46 chr13 16731788 16731858 -103013040 - L1MC4 LINE L1 0 8042 7974 1788 195 10 3 chr13 16731858 16732156 -103012742 + AluJo SINE Alu 7 306 -6 1248 296 60 46 chr13 16732156 16732802 -103012096 - L1MC4 LINE L1 -68 7974 7316 1705 186 28 3 chr13 16732825 16733116 -103011782 + AluSx SINE Alu 1 298 -14 1145 184 87 5 chr13 16733128 16733335 -103011563 + AluJo SINE Alu 88 311 -1 711 200 0 0 chr13 16733338 16733468 -103011430 - AluJo/FLAM SINE Alu -172 130 1 659 256 45 76 chr13 16733469 16733758 -103011140 - L1MC4 LINE L1 -823 7219 6940 2335 111 3 0 chr13 16733952 16734259 -103010639 + AluSx SINE Alu 5 312 0 1941 130 23 27 chr13 16735128 16735275 -103009623 - AluSx SINE Alu -12 300 154 5738 136 27 32 chr13 16735275 16736352 -103008546 + MER11C LTR ERVK 1 1071 0 1941 130 23 27 chr13 16736352 16736505 -103008393 - AluSx SINE Alu -158 154 1 760 118 30 7 chr13 16736528 16736663 -103008235 - L1MB2 LINE L1 -4 6167 6030 663 148 0 33 chr13 16736685 16736807 -103008091 + FLAM_C SINE Alu 16 133 -10 1152 193 23 42 chr13 16736825 16737090 -103007808 - L1MB2 LINE L1 -188 5995 5736 1624 197 38 0 chr13 16737090 16737380 -103007518 - AluJo SINE Alu -8 304 4 1098 256 37 8 chr13 16737384 16737735 -103007163 - L1MB2 LINE L1 -941 5205 4845 240 258 62 31 chr13 16738804 16738901 -103005997 + MER5A DNA MER1_type 8 107 -82 2157 141 0 0 chr13 16742358 16742656 -103002242 - AluSx SINE Alu -9 303 6 1862 167 0 13 chr13 16742727 16743027 -103001871 + AluJo SINE Alu 1 296 -16 1507 216 7 7 chr13 16743602 16743894 -103001004 - AluJo SINE Alu -18 294 3 268 308 10 0 chr13 16744911 16745015 -102999883 + MIR SINE MIR 61 165 -97 467 179 109 98 chr13 16750104 16750193 -102994705 - L1MB8 LINE L1 -37 6141 6054 1908 162 20 0 chr13 16750193 16750489 -102994409 - AluSx SINE Alu -8 304 3 467 179 109 98 chr13 16750489 16750583 -102994315 - L1MB8 LINE L1 -124 6054 5956 1601 233 55 37 chr13 16750583 16751072 -102993826 + MLT1D LTR MaLR 1 498 -7 1897 212 41 91 chr13 16751078 16752017 -102992881 + MLT1D-int LTR MaLR 2 875 -496 3010 169 58 37 chr13 16752194 16752234 -102992664 - L1MB8 LINE L1 -205 5973 5935 2103 134 3 0 chr13 16752234 16752532 -102992366 - AluSg SINE Alu -11 299 1 3010 169 58 37 chr13 16752532 16752939 -102991959 - L1MB8 LINE L1 -243 5935 5538 1606 166 68 7 chr13 16752939 16753217 -102991681 + AluSx SINE Alu 2 296 -16 3010 169 58 37 chr13 16753217 16753739 -102991159 - L1MB8 LINE L1 -640 5538 4981 2218 111 0 20 chr13 16753881 16754178 -102990720 + AluSg SINE Alu 5 295 -15 472 157 0 0 chr13 16754613 16754696 -102990202 + FLAM_C SINE Alu 61 143 0 1219 180 28 14 chr13 16755179 16755396 -102989502 - AluJo SINE Alu -11 301 82 2612 47 0 7 chr13 16755737 16756036 -102988862 - AluY SINE Alu -14 297 1 1787 156 10 34 chr13 16756101 16756396 -102988502 + AluJb SINE Alu 1 288 -24 1678 153 17 27 chr13 16756428 16756728 -102988170 + AluJo SINE Alu 14 310 -2 416 131 0 0 chr13 16756821 16756882 -102988016 - U6 snRNA snRNA -46 61 1 266 298 63 63 chr13 16757183 16757499 -102987399 + L2 LINE L2 1695 2010 -1304 800 249 139 79 chr13 16757623 16757685 -102987213 - L2 LINE L2 0 3313 3256 708 190 0 29 chr13 16757685 16757822 -102987076 + FLAM_C SINE Alu 1 133 0 800 249 139 79 chr13 16757822 16758021 -102986877 - L2 LINE L2 -57 3256 3070 1143 209 129 0 chr13 16758021 16758284 -102986614 - AluJo SINE Alu -5 297 1 1715 183 3 29 chr13 16758285 16758591 -102986307 - AluJo SINE Alu -14 298 1 800 249 139 79 chr13 16758591 16758807 -102986091 - L2 LINE L2 -242 3071 2804 681 291 25 42 chr13 16759292 16759577 -102985321 - L2 LINE L2 -757 2557 2278 457 154 0 0 chr13 16759744 16759822 -102985076 - MADE1 DNA Mariner 0 80 3 1796 174 14 0 chr13 16760761 16761054 -102983844 + AluJb SINE Alu 1 297 -15 2165 124 17 3 chr13 16761058 16761357 -102983541 + AluSq SINE Alu 1 303 -10 2278 116 0 16 chr13 16762523 16762834 -102982064 + AluSx SINE Alu 1 306 -6 327 179 43 0 chr13 16762834 16762974 -102981924 + (TA)n Simple_repeat Simple_repeat 1 146 0 2190 114 0 0 chr13 16763403 16763684 -102981214 - AluSx SINE Alu -15 297 17 1711 164 32 0 chr13 16764405 16764685 -102980213 + AluJo SINE Alu 1 289 -23 852 187 94 0 chr13 16764767 16764938 -102979960 - MER5A DNA MER1_type 0 189 3 400 236 162 42 chr13 16765184 16765234 -102979664 + L1MC5 LINE L1 7609 7652 -309 1846 155 7 0 chr13 16765234 16765505 -102979393 + AluSx SINE Alu 6 278 -34 400 236 162 42 chr13 16765505 16765645 -102979253 + L1MC5 LINE L1 7652 7822 -139 1136 147 17 6 chr13 16765646 16765823 -102979075 + AluSg/x SINE Alu 127 305 -7 1595 223 0 0 chr13 16765829 16766120 -102978778 + AluJb SINE Alu 3 293 -19 2151 116 10 3 chr13 16766174 16766466 -102978432 + AluSq SINE Alu 1 294 -19 2027 161 0 3 chr13 16766508 16766813 -102978085 - AluSx SINE Alu -8 304 1 330 332 212 12 chr13 16766865 16767124 -102977774 - L3 LINE CR1 -72 1505 1195 2069 161 0 0 chr13 16767578 16767883 -102977015 + AluJo SINE Alu 1 305 -7 24 0 0 0 chr13 16768861 16768885 -102976013 + AT_rich Low_complexity Low_complexity 1 24 0 635 280 104 45 chr13 16769053 16769389 -102975509 + L2 LINE L2 2077 2432 -882 1675 153 15 70 chr13 16769489 16769816 -102975082 + AluJb SINE Alu 1 309 -3 291 347 66 33 chr13 16769853 16770066 -102974832 - L2 LINE L2 -67 3205 2986 1841 164 20 0 chr13 16770374 16770666 -102974232 - AluJo SINE Alu -14 298 1 21 0 0 0 chr13 16771540 16771561 -102973337 + AT_rich Low_complexity Low_complexity 1 21 0 646 151 0 0 chr13 16772133 16772226 -102972672 + AluJ/FLAM SINE Alu 2 94 -218 303 261 0 0 chr13 16772253 16772318 -102972580 - L1MC4 LINE L1 -1338 6704 6640 1921 164 0 3 chr13 16772321 16772613 -102972285 - AluSx SINE Alu -21 291 1 928 169 48 6 chr13 16772629 16772795 -102972103 + FRAM SINE Alu 1 165 -11 512 243 55 81 chr13 16774711 16775384 -102969514 + HSREP522 Satellite telomeric 1 655 -203 1076 86 0 0 chr13 16776652 16776791 -102968107 - MER85 DNA T2_type 0 139 1 1999 112 4 0 chr13 16776981 16777248 -102967650 - AluSp SINE Alu -45 268 1 1990 154 0 3 chr13 16777350 16777648 -102967250 - AluSq SINE Alu -16 297 1 22 0 0 0 chr13 16777770 16777792 -102967106 + AT_rich Low_complexity Low_complexity 1 22 0 1558 180 23 4 chr13 16778221 16778482 -102966416 - AluJb SINE Alu -44 268 3 983 42 8 8 chr13 16778517 16778635 -102966263 + AluYb8 SINE Alu 2 119 -199 612 147 0 0 chr13 16778637 16778746 -102966152 - L1 LINE L1 -1399 4747 4639 1000 103 23 34 chr13 16779159 16779334 -102965564 - LTR8-int LTR ERV1 -6261 337 165 685 183 4 22 chr13 16779332 16779567 -102965331 + MER4-int LTR ERV1 307 579 -6019 * 862 147 96 48 chr13 16779574 16779923 -102964975 + MER4-int LTR ERV1 503 786 -4229 * 3777 116 84 30 chr13 16779891 16780132 -102964766 + MER4-int LTR ERV1 1776 2002 -4596 2688 167 51 93 chr13 16780132 16780294 -102964604 - LTR8 LTR ERV1 -1 690 523 2051 153 0 0 chr13 16780294 16780595 -102964303 - AluY SINE Alu -10 301 1 2688 167 51 93 chr13 16780595 16781152 -102963746 - LTR8 LTR ERV1 -168 523 1 3777 116 84 30 chr13 16781152 16781684 -102963214 + MER4-int LTR ERV1 2002 2591 -4007 37456 56 30 42 chr13 16782959 16788418 -102956480 + L1P LINE L1 2 5391 -755 275 194 32 0 chr13 16789460 16789522 -102955376 - MER53 DNA DNA -125 64 1 322 156 38 31 chr13 16789693 16789853 -102955045 + (TG)n Simple_repeat Simple_repeat 1 161 0 220 198 146 23 chr13 16790017 16790131 -102954767 + MIR SINE MIR 55 184 -65 453 228 0 0 chr13 16790288 16790380 -102954518 - 5S rRNA rRNA -28 93 2 301 274 68 72 chr13 16791447 16791710 -102953188 - L1MEd LINE L1 -4963 1156 895 2055 146 3 10 chr13 16791727 16792035 -102952863 - AluSx SINE Alu -6 306 1 1684 174 3 49 chr13 16794233 16794537 -102950361 + AluJo SINE Alu 17 306 -6 422 330 48 35 chr13 16795534 16795764 -102949134 + L1MC4a LINE L1 5342 5574 -2234 261 236 24 79 chr13 16795910 16796037 -102948861 + L1MC4a LINE L1 5819 5938 -1870 1695 192 0 14 chr13 16796253 16796545 -102948353 + AluJo SINE Alu 6 293 -19 763 120 0 0 chr13 16796631 16796731 -102948167 - AluSp/q SINE Alu -19 294 195 4972 194 125 45 chr13 16797032 16797715 -102947183 + L1MCa LINE L1 807 1433 -4993 2088 126 20 0 chr13 16797715 16798016 -102946882 + AluSg SINE Alu 4 310 0 4972 194 125 45 chr13 16798016 16799206 -102945692 + L1MCa LINE L1 1433 3890 -2536 341 174 87 0 chr13 16799209 16799278 -102945620 + L1MCa LINE L1 3921 3995 -2431 4256 229 68 29 chr13 16799430 16799631 -102945267 - L1M4 LINE L1 -496 5678 5486 1986 155 0 0 chr13 16799631 16799928 -102944970 + AluSx SINE Alu 2 298 -14 4256 229 68 29 chr13 16799928 16801026 -102943872 - L1M4 LINE L1 -688 5486 4285 2081 127 14 0 chr13 16801026 16801318 -102943580 - AluY SINE Alu -15 296 1 4256 229 68 29 chr13 16801318 16801765 -102943133 - L1M4 LINE L1 -1889 4285 3857 2020 246 29 9 chr13 16802024 16802578 -102942320 - L1M4 LINE L1 -2293 3853 3289 1853 143 7 20 chr13 16802747 16803047 -102941851 - AluSx SINE Alu -16 296 1 1858 159 41 9 chr13 16806279 16806624 -102938274 - MLT1A1 LTR MaLR 0 365 10 207 100 0 0 chr13 16806632 16806662 -102938236 + (TG)n Simple_repeat Simple_repeat 1 30 0 222 175 95 16 chr13 16807535 16807598 -102937300 + MIR SINE MIR 79 146 -62 342 158 26 66 chr13 16808899 16808975 -102935923 - MIR SINE MIR -140 122 50 233 286 0 0 chr13 16809545 16809594 -102935304 + (TG)n Simple_repeat Simple_repeat 1 49 0 240 326 0 0 chr13 16811552 16811638 -102933260 - MIR SINE MIR -19 243 158 676 312 111 37 chr13 16811790 16811943 -102932955 - L1MC5 LINE L1 -31 7930 7790 1967 163 0 0 chr13 16811943 16812244 -102932654 + AluSx SINE Alu 1 301 -11 676 312 111 37 chr13 16812244 16812687 -102932211 - L1MC5 LINE L1 -171 7790 7290 234 216 127 94 chr13 16812847 16813028 -102931870 - L1MC5 LINE L1 -781 7180 6994 454 226 57 8 chr13 16813051 16813175 -102931723 - MER53 DNA DNA -59 130 1 244 282 11 39 chr13 16814160 16814341 -102930557 + (CA)n Simple_repeat Simple_repeat 1 176 0 251 330 41 10 chr13 16817506 16817603 -102927295 + MIR3 SINE MIR 66 165 -43 255 260 115 19 chr13 16818599 16818703 -102926195 + MIR SINE MIR 29 142 -120 1412 212 32 39 chr13 16819013 16819493 -102925405 + MLT2A2 LTR ERVL 65 552 -2 822 306 101 8 chr13 16819493 16819849 -102925049 - L2 LINE L2 -1732 1582 1194 26 30 0 0 chr13 16819860 16819893 -102925005 + AT_rich Low_complexity Low_complexity 1 33 0 2896 168 28 6 chr13 16819897 16820426 -102924472 - L1MC1 LINE L1 -257 6076 5536 423 204 0 32 chr13 16821616 16821709 -102923189 + L2 LINE L2 2665 2754 -560 339 275 79 85 chr13 16821725 16822193 -102922705 - MLT1G1 LTR MaLR -8 541 79 2423 57 6 50 chr13 16822193 16822511 -102922387 - AluY SINE Alu -7 304 1 339 275 79 85 chr13 16822511 16822585 -102922313 - MLT1G1 LTR MaLR -470 79 6 561 257 31 123 chr13 16822591 16822848 -102922050 + L2 LINE L2 2756 2976 -337 1773 140 21 14 chr13 16822848 16823133 -102921765 - AluSx SINE Alu -14 298 12 561 257 31 123 chr13 16823133 16823218 -102921680 + L2 LINE L2 2976 3067 -246 497 321 7 0 chr13 16823511 16823651 -102921247 - L2 LINE L2 -940 2374 2234 1274 165 27 9 chr13 16823656 16823880 -102921018 - MLT1E1 LTR MaLR -1 653 426 620 245 22 0 chr13 16823880 16824019 -102920879 - HERV16 LTR ERVL -4385 611 470 630 221 28 7 chr13 16824115 16824260 -102920638 - HERV16 LTR ERVL -4539 457 310 670 276 56 5 chr13 16824367 16824563 -102920335 - LTR16A LTR ERVL -179 271 66 1438 231 120 74 chr13 16824714 16825083 -102919815 - L1ME3A LINE L1 -31 6139 5730 397 21 0 0 chr13 16825083 16825131 -102919767 + L1PA4 LINE L1 6108 6155 0 1438 231 120 74 chr13 16825131 16825359 -102919539 - L1ME3A LINE L1 -440 5730 5514 943 231 114 108 chr13 16825904 16826925 -102917973 - L1MC5 LINE L1 -901 6907 5853 271 185 9 9 chr13 16827186 16827294 -102917604 + (GAATG)n Satellite Satellite 2 109 0 877 115 6 6 chr13 16827317 16827482 -102917416 + (GAATG)n Satellite Satellite 4 168 0 186 150 0 0 chr13 16827500 16827540 -102917358 + (GAATG)n Satellite Satellite 1 40 0 684 202 0 0 chr13 16827565 16827899 -102916999 + (GAATG)n Satellite Satellite 1 334 0 747 173 0 0 chr13 16827946 16828253 -102916645 + (GAATG)n Satellite Satellite 1 307 0 741 163 0 0 chr13 16828265 16828443 -102916455 + (GAATG)n Satellite Satellite 3 180 0 697 177 2 2 chr13 16828456 16828962 -102915936 + (GAATG)n Satellite Satellite 1 506 0 727 174 0 28 chr13 16829016 16829541 -102915357 + (GAATG)n Satellite Satellite 1 510 0 852 149 0 0 chr13 16829552 16829910 -102914988 + (GAATG)n Satellite Satellite 1 358 0 705 171 0 0 chr13 16829976 16830151 -102914747 + (GAATG)n Satellite Satellite 2 176 0 752 171 8 9 chr13 16830210 16830860 -102914038 + (GAATG)n Satellite Satellite 1 649 0 924 127 0 0 chr13 16830883 16831048 -102913850 + (GAATG)n Satellite Satellite 4 168 0 807 107 0 41 chr13 16832199 16832321 -102912577 + AluSg/x SINE Alu 175 291 -19 2196 129 0 0 chr13 16832332 16832635 -102912263 + AluSx SINE Alu 1 303 -9 927 107 0 0 chr13 16832982 16833103 -102911795 + AluSq/x SINE Alu 1 121 -191 2254 91 0 14 chr13 16833543 16833839 -102911059 - AluY SINE Alu -19 292 1 23 0 0 0 chr13 16833887 16833910 -102910988 + AT_rich Low_complexity Low_complexity 1 23 0 1951 106 6 91 chr13 16834507 16834836 -102910062 + AluSx SINE Alu 1 301 -11 360 279 93 29 chr13 16835303 16835507 -102909391 - L1ME4a LINE L1 -260 5861 5645 27 29 0 0 chr13 16835822 16835856 -102909042 + AT_rich Low_complexity Low_complexity 1 34 0 2018 242 93 16 chr13 16836552 16836909 -102907989 - L1MA9 LINE L1 -25 6287 5959 342 0 0 0 chr13 16836909 16836947 -102907951 + (TG)n Simple_repeat Simple_repeat 1 38 0 2018 242 93 16 chr13 16836947 16837204 -102907694 - L1MA9 LINE L1 -353 5959 5626 214 296 12 37 chr13 16837619 16837700 -102907198 + L2 LINE L2 3172 3250 -63 647 116 187 13 chr13 16838255 16838410 -102906488 - L1MA9 LINE L1 0 6312 6131 1896 150 14 0 chr13 16838415 16838708 -102906190 + AluSx SINE Alu 1 297 -15 237 175 198 63 chr13 16838734 16838860 -102906038 + HAL1 LINE L1 836 978 -1529 2120 148 0 0 chr13 16838911 16839216 -102905682 + AluSx SINE Alu 1 305 -7 701 183 22 29 chr13 16839279 16839416 -102905482 - MER68 LTR ERV1 0 562 427 903 176 50 5 chr13 16839594 16839797 -102905101 + MLT1D LTR MaLR 227 423 -82 2179 118 7 3 chr13 16840837 16841142 -102903756 - AluSg SINE Alu -4 306 1 278 287 134 30 chr13 16841506 16841670 -102903228 + MIR SINE MIR 81 261 -1 4371 114 16 41 chr13 16843036 16843434 -102901464 + Tigger1 DNA MER2_type 1064 1471 -947 1376 196 17 33 chr13 16843434 16843735 -102901163 - AluJo SINE Alu -16 296 1 4371 114 16 41 chr13 16843735 16843769 -102901129 + Tigger1 DNA MER2_type 1471 1504 -914 2308 98 0 3 chr13 16843769 16844065 -102900833 + AluY SINE Alu 1 295 -16 4371 114 16 41 chr13 16844065 16844334 -102900564 + Tigger1 DNA MER2_type 1504 1748 -670 2067 120 3 0 chr13 16844411 16844694 -102900204 + AluSp SINE Alu 19 302 -11 1779 157 23 0 chr13 16844694 16844993 -102899905 + Tigger1 DNA MER2_type 1739 2044 -374 435 223 54 9 chr13 16844991 16845103 -102899795 + Tigger1 DNA MER2_type 2302 2418 0 * 927 239 127 14 chr13 16845748 16846032 -102898866 - MER33 DNA MER1_type -1 323 8 1527 193 24 20 chr13 16846152 16846447 -102898451 - AluJo SINE Alu -16 296 1 452 201 27 121 chr13 16848326 16848475 -102896423 - L1MB7 LINE L1 -9 6175 6041 1719 214 79 46 chr13 16848535 16848991 -102895907 - L1MB7 LINE L1 -294 5884 5397 1682 167 3 17 chr13 16848991 16849279 -102895619 - AluJb SINE Alu -7 305 22 1719 214 79 46 chr13 16849279 16849462 -102895436 - L1MB7 LINE L1 -781 5397 5222 1011 308 173 35 chr13 16849540 16850492 -102894406 + L2 LINE L2 1852 2935 -379 342 215 0 0 chr13 16850711 16850790 -102894108 + C-rich Low_complexity Low_complexity 3 81 0 1791 167 24 0 chr13 16850790 16851084 -102893814 - AluSg SINE Alu -9 301 1 4610 193 37 35 chr13 16852170 16853951 -102890947 - L1MB3 LINE L1 -2 6181 4398 2223 135 21 52 chr13 16856381 16856962 -102887936 - MER4A LTR ERV1 0 664 34 549 261 151 13 chr13 16857384 16857695 -102887203 - Charlie7 DNA MER1_type -262 2350 1997 399 170 2 17 chr13 16857696 16857785 -102887113 - L1MA6 LINE L1 -17 6283 6196 245 287 205 23 chr13 16858365 16858550 -102886348 - MIR SINE MIR -25 237 23 303 210 0 0 chr13 16858591 16858653 -102886245 + L1MC4 LINE L1 6642 6703 -1339 301 200 0 0 chr13 16858700 16858760 -102886138 - L1MC4 LINE L1 -1341 6701 6642 1090 195 191 24 chr13 16858760 16859006 -102885892 + AluJo SINE Alu 1 287 -15 7544 94 21 21 chr13 16859516 16860523 -102884375 - LTR13 LTR ERVK 0 1007 1 965 190 124 13 chr13 16862317 16862543 -102882355 - L1MB2 LINE L1 0 6171 5921 373 283 61 11 chr13 16862803 16862983 -102881915 - L1M4 LINE L1 -919 5227 5039 510 251 57 28 chr13 16862986 16863233 -102881665 - Charlie5 DNA MER1_type -27 2585 2332 1028 247 80 37 chr13 16863273 16863710 -102881188 - L1M4 LINE L1 -1113 5033 4578 188 200 150 50 chr13 16865737 16865817 -102879081 - MIR SINE MIR -75 133 46 27732 129 32 20 chr13 16866027 16866590 -102878308 + L1P3 LINE L1 689 1244 -5243 291 71 0 0 chr13 16866590 16866632 -102878266 + (CAA)n Simple_repeat Simple_repeat 1 42 0 27732 129 32 20 chr13 16866632 16871124 -102873774 + L1P3 LINE L1 1244 5810 -677 228 216 39 0 chr13 16871124 16871175 -102873723 - L1MA6 LINE L1 -128 6172 6120 192 340 118 7 chr13 16871251 16871395 -102873503 + L2 LINE L2 799 958 -2356 292 146 0 0 chr13 16871398 16871446 -102873452 - Alu SINE Alu -7 295 248 5411 104 8 1 chr13 16871446 16872177 -102872721 + THE1B-int LTR MaLR 845 1580 0 2275 105 21 43 chr13 16872177 16872412 -102872486 + THE1B LTR MaLR 1 227 -137 2349 81 0 7 chr13 16872412 16872721 -102872177 + AluY SINE Alu 1 307 -4 2275 105 21 43 chr13 16872721 16872857 -102872041 + THE1B LTR MaLR 227 364 0 222 213 107 40 chr13 16872867 16872942 -102871956 - MIR SINE MIR -119 143 64 255 301 7 7 chr13 16873222 16873315 -102871583 + CT-rich Low_complexity Low_complexity 1 93 0 1567 171 0 18 chr13 16873315 16873596 -102871302 - AluJb SINE Alu -36 276 1 1410 193 76 6 chr13 16873913 16874229 -102870669 - MER44D DNA MER2_type 0 609 2 356 330 85 23 chr13 16874239 16874415 -102870483 + L2 LINE L2 3126 3312 -1 1306 193 64 0 chr13 16874636 16874901 -102869997 - AluJo SINE Alu -30 282 1 202 263 34 17 chr13 16876958 16877076 -102867822 + (TCTG)n Simple_repeat Simple_repeat 1 120 0 357 82 0 0 chr13 16880375 16880424 -102864474 + (TCCC)n Simple_repeat Simple_repeat 4 52 0 269 254 55 12 chr13 16881292 16881457 -102863441 + (TCTG)n Simple_repeat Simple_repeat 1 172 0 360 295 13 36 chr13 16881511 16881768 -102863130 - L1M LINE L1 -786 5360 5116 1774 191 23 22 chr13 16882649 16883023 -102861875 + MLT2C1 LTR ERVL 1 444 -20 268 295 27 36 chr13 16883024 16883136 -102861762 + (TCTCTG)n Simple_repeat Simple_repeat 4 114 0 535 338 102 3 chr13 16883223 16883507 -102861391 + L2 LINE L2 2828 3139 -174 216 0 0 0 chr13 16883526 16883550 -102861348 + (TTTA)n Simple_repeat Simple_repeat 1 24 0 770 191 0 0 chr13 16883550 16883676 -102861222 - AluSx SINE Alu -50 260 135 234 0 0 0 chr13 16883676 16883702 -102861196 + (TTTA)n Simple_repeat Simple_repeat 2 27 0 39838 76 9 2 chr13 16883702 16889781 -102855117 - L1PA5 LINE L1 -11 6143 18 849 134 0 0 chr13 16889782 16889909 -102854989 - AluSx SINE Alu -178 135 9 392 255 85 9 chr13 16889934 16890040 -102854858 + L2 LINE L2 3136 3249 -23 414 299 0 0 chr13 16890911 16891018 -102853880 - Charlie8 DNA MER1_type -2142 275 169 356 286 71 48 chr13 16891074 16891242 -102853656 - MIR3 SINE MIR -17 191 20 270 0 0 0 chr13 16892381 16892411 -102852487 + (TG)n Simple_repeat Simple_repeat 2 31 0 231 123 18 35 chr13 16892448 16892505 -102852393 + LTR66 LTR ERVL 404 459 -151 188 67 33 0 chr13 16892531 16892561 -102852337 + (TCCA)n Simple_repeat Simple_repeat 4 34 0 311 155 0 14 chr13 16892577 16892648 -102852250 + CT-rich Low_complexity Low_complexity 3 72 0 260 328 16 0 chr13 16892655 16892780 -102852118 + (TCCA)n Simple_repeat Simple_repeat 2 128 0 467 134 12 0 chr13 16892796 16892878 -102852020 + CT-rich Low_complexity Low_complexity 2 84 0 187 315 96 14 chr13 16892880 16892953 -102851945 - L2 LINE L2 -1 3271 3193 1169 232 89 17 chr13 16893086 16893388 -102851510 + MLT1J1 LTR MaLR 20 343 -103 375 311 68 114 chr13 16893737 16894175 -102850723 - L2 LINE L2 -4 3268 2851 349 265 26 30 chr13 16894350 16894482 -102850416 - MIR SINE MIR -32 176 47 228 235 0 0 chr13 16894651 16894719 -102850179 + (TG)n Simple_repeat Simple_repeat 2 69 0 276 265 0 0 chr13 16894930 16895032 -102849866 + (CA)n Simple_repeat Simple_repeat 1 102 0 288 0 0 0 chr13 16895368 16895400 -102849498 + (TG)n Simple_repeat Simple_repeat 1 32 0 189 0 0 0 chr13 16895402 16895423 -102849475 + (GA)n Simple_repeat Simple_repeat 2 22 0 225 94 0 0 chr13 16895835 16895867 -102849031 + (GAAAA)n Simple_repeat Simple_repeat 2 33 0 3694 106 0 6 chr13 16895947 16896458 -102848440 - MER9 LTR ERVK -3 508 1 1098 155 27 27 chr13 16897037 16897256 -102847642 + AluJo SINE Alu 86 304 -8 504 301 38 10 chr13 16897290 16897499 -102847399 + L1ME4a LINE L1 5681 5895 -226 400 288 28 34 chr13 16897567 16897744 -102847154 + L1ME4a LINE L1 5887 6062 -59 1053 179 0 72 chr13 16897791 16898014 -102846884 - AluJo SINE Alu -22 290 84 363 274 21 0 chr13 16898572 16898667 -102846231 + MER58 DNA MER1_type 171 267 -74 416 323 37 6 chr13 16898707 16898871 -102846027 + L2 LINE L2 3144 3312 -1 356 230 10 20 chr13 16899188 16899288 -102845610 + HAL1b LINE L1 84 182 -1166 327 296 9 9 chr13 16899356 16899471 -102845427 + HAL1b LINE L1 283 397 -951 4648 180 84 12 chr13 16899943 16901374 -102843524 - L1MA10 LINE L1 0 6334 4783 1679 136 6 114 chr13 16901743 16901882 -102843016 + AluSx SINE Alu 5 89 -213 1880 149 7 0 chr13 16901882 16902184 -102842714 + AluSx SINE Alu 1 304 -8 1679 136 6 114 chr13 16902184 16902376 -102842522 + AluSx SINE Alu 89 300 -2 2289 136 86 5 chr13 16903282 16903678 -102841220 + MSTA LTR MaLR 1 428 0 1232 156 6 147 chr13 16904919 16905265 -102839633 + AluSx SINE Alu 1 297 -5 1141 162 52 17 chr13 16905554 16905899 -102838999 + Tigger1 DNA MER2_type 1 2410 -8 609 293 143 43 chr13 16906494 16907010 -102837888 + L1MC4a LINE L1 4587 5154 -992 705 285 123 18 chr13 16907075 16907521 -102837377 + L1MC4a LINE L1 5449 5941 -1867 384 242 84 67 chr13 16910050 16910348 -102834550 - L1MC5 LINE L1 -175 7786 7484 211 309 41 10 chr13 16910540 16910637 -102834261 + MIR3 SINE MIR 66 165 -43 270 111 111 63 chr13 16911686 16911749 -102833149 + MIR3 SINE MIR 90 155 -53 603 229 0 0 chr13 16916321 16916491 -102828407 + (TGAA)n Simple_repeat Simple_repeat 4 173 0 * 769 185 11 0 chr13 16916454 16916632 -102828266 + (TGGA)n Simple_repeat Simple_repeat 1 180 0 917 171 2 5 chr13 16916660 16917103 -102827795 + (TGGA)n Simple_repeat Simple_repeat 1 441 0 774 199 0 3 chr13 16917144 16917449 -102827449 + (TGGA)n Simple_repeat Simple_repeat 1 303 0 950 166 3 3 chr13 16917467 16917782 -102827116 + (TGGA)n Simple_repeat Simple_repeat 1 315 0 185 127 27 64 chr13 16918714 16918824 -102826074 + (CA)n Simple_repeat Simple_repeat 1 106 0 432 246 26 9 chr13 16922466 16922580 -102822318 - MIR SINE MIR -115 147 32 262 289 125 0 chr13 16925214 16925318 -102819580 + MER5B DNA MER1_type 54 170 -8 222 276 0 88 chr13 16925811 16926003 -102818895 + G-rich Low_complexity Low_complexity 5 179 0 581 191 0 9 chr13 16926808 16926913 -102817985 + MLT1A2 LTR MaLR 271 374 0 262 114 0 0 chr13 16927804 16927839 -102817059 - U2 snRNA snRNA -153 35 1 272 345 42 42 chr13 16927915 16928083 -102816815 - MLT1K LTR MaLR -232 356 189 757 169 0 0 chr13 16928279 16928397 -102816501 - AluJb SINE Alu -5 307 190 1283 133 21 5 chr13 16928399 16930333 -102814565 + GSATX Satellite centromeric 1 1964 -66 241 244 0 0 chr13 16931544 16931589 -102813309 + MIR SINE MIR 51 95 -167 189 74 0 0 chr13 16931590 16931617 -102813281 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 188 311 33 16 chr13 16933924 16933985 -102810913 - L2 LINE L2 -69 3203 3142 2268 116 3 0 chr13 16934039 16934340 -102810558 - AluSg SINE Alu -8 302 1 679 123 53 18 chr13 16934413 16934527 -102810371 - FLAM_C SINE Alu -9 134 17 302 267 40 10 chr13 16934754 16934855 -102810043 + L2 LINE L2 3209 3312 -1 209 287 10 59 chr13 16935296 16935397 -102809501 - L2 LINE L2 -2660 654 559 26 50 0 0 chr13 16935871 16935911 -102808987 + AT_rich Low_complexity Low_complexity 1 40 0 984 199 23 14 chr13 16935913 16936134 -102808764 + AluJo SINE Alu 83 305 -7 348 322 127 39 chr13 16936214 16936546 -102808352 + L3 LINE CR1 307 667 -910 219 164 16 33 chr13 16936932 16936993 -102807905 + (TTTAA)n Simple_repeat Simple_repeat 4 63 0 36 23 0 0 chr13 16937103 16937146 -102807752 + AT_rich Low_complexity Low_complexity 1 43 0 314 301 12 0 chr13 16937147 16937230 -102807668 - L2 LINE L2 -3 3269 3186 525 16 0 0 chr13 16937444 16937506 -102807392 + (TG)n Simple_repeat Simple_repeat 2 63 0 860 241 0 0 chr13 16937523 16937689 -102807209 + MER2 DNA MER2_type 1 166 -179 2136 109 7 13 chr13 16938812 16939114 -102805784 + AluSx SINE Alu 1 300 -12 2203 110 7 7 chr13 16939936 16940244 -102804654 - MLT2A2 LTR ERVL -145 308 1 249 128 0 0 chr13 16940989 16941036 -102803862 + (TATG)n Simple_repeat Simple_repeat 2 48 0 503 338 85 52 chr13 16942884 16943496 -102801402 + L2 LINE L2 1729 2360 -954 214 216 134 62 chr13 16943940 16944037 -102800861 - MIR SINE MIR -15 247 144 1944 201 39 31 chr13 16944041 16944583 -102800315 + MLT2A2 LTR ERVL 1 554 0 193 269 301 0 chr13 16944589 16944682 -102800216 - MIR SINE MIR -122 140 20 2464 46 0 0 chr13 16944918 16945199 -102799699 - L1PA5 LINE L1 0 6154 5874 401 261 57 51 chr13 16945330 16945487 -102799411 + MLT1G1 LTR MaLR 430 587 -8 221 182 0 45 chr13 16945560 16945626 -102799272 + GA-rich Low_complexity Low_complexity 2 64 0 423 0 0 0 chr13 16945683 16945730 -102799168 + (CA)n Simple_repeat Simple_repeat 2 48 0 233 182 18 0 chr13 16945889 16945944 -102798954 + CT-rich Low_complexity Low_complexity 2 57 0 2524 173 29 0 chr13 16946135 16946551 -102798347 - MSTA LTR MaLR 0 428 1 620 363 28 15 chr13 16947168 16947493 -102797405 - LTR16A LTR ERVL -12 438 110 23 54 0 0 chr13 16947763 16947800 -102797098 + AT_rich Low_complexity Low_complexity 1 37 0 180 0 0 0 chr13 16948747 16948767 -102796131 + (TATG)n Simple_repeat Simple_repeat 2 21 0 30 0 0 0 chr13 16949392 16949422 -102795476 + AT_rich Low_complexity Low_complexity 1 30 0 617 239 222 0 chr13 16951530 16951710 -102793188 - MER58A DNA MER1_type -4 220 1 4120 115 7 7 chr13 16952042 16952606 -102792292 + LTR6A LTR ERV1 1 564 0 21 0 0 0 chr13 16953742 16953763 -102791135 + AT_rich Low_complexity Low_complexity 1 21 0 2327 81 7 0 chr13 16954479 16954776 -102790122 + AluY SINE Alu 1 299 -12 21 0 0 0 chr13 16954897 16954918 -102789980 + AT_rich Low_complexity Low_complexity 1 21 0 2016 133 7 3 chr13 16955089 16955391 -102789507 + AluSx SINE Alu 1 303 -9 361 316 105 55 chr13 16955515 16955684 -102789214 - L1M4 LINE L1 -1707 4439 4280 2143 127 0 0 chr13 16955684 16955984 -102788914 - AluSg1 SINE Alu -9 300 1 361 316 105 55 chr13 16955984 16956412 -102788486 - L1M4 LINE L1 -1866 4280 3812 398 208 75 0 chr13 16956454 16956574 -102788324 - L1MC4 LINE L1 0 8042 7914 528 279 53 4 chr13 16956628 16956890 -102788008 + L1M4 LINE L1 2890 3164 -2982 309 26 0 0 chr13 16956959 16956997 -102787901 + (CA)n Simple_repeat Simple_repeat 2 39 0 385 299 80 25 chr13 16957042 16957366 -102787532 - L1M4 LINE L1 -3267 2879 2538 * 5662 169 27 15 chr13 16957360 16957683 -102787215 - L1PB2 LINE L1 -2 6149 5832 2051 159 0 0 chr13 16957683 16957991 -102786907 - AluSq SINE Alu -5 308 1 5662 169 27 15 chr13 16957991 16959383 -102785515 - L1PB2 LINE L1 -319 5832 4413 406 146 47 19 chr13 16959385 16959605 -102785293 + (TA)n Simple_repeat Simple_repeat 1 226 0 2583 210 43 3 chr13 16959605 16960187 -102784711 - L1PB2 LINE L1 -1747 4399 3795 566 285 39 0 chr13 16960183 16960390 -102784508 - L1M4 LINE L1 -3597 2549 2335 * 426 273 35 41 chr13 16960434 16960606 -102784292 + L1MEc LINE L1 56 226 -6170 2924 194 7 4 chr13 16960734 16961296 -102783602 - L1PA12 LINE L1 -1122 5024 4461 6333 110 13 9 chr13 16961296 16962440 -102782458 + L1PA12 LINE L1 5026 6168 0 212 337 0 23 chr13 16962528 16962614 -102782284 - L2 LINE L2 -1 3271 3188 261 0 0 0 chr13 16962635 16962664 -102782234 + (TG)n Simple_repeat Simple_repeat 2 30 0 3663 201 59 82 chr13 16962723 16964317 -102780581 + L1M1 LINE L1 3142 4700 -2865 1551 137 26 26 chr13 16964333 16964604 -102780294 + AluSx SINE Alu 6 276 -36 888 157 38 22 chr13 16964604 16964789 -102780109 - MER41-int LTR ERV1 -6094 2026 1839 * 1515 177 22 4 chr13 16964788 16965059 -102779839 - MER41-int LTR ERV1 -3592 2354 2079 360 256 0 25 chr13 16966288 16966409 -102778489 + GA-rich Low_complexity Low_complexity 3 120 0 433 238 79 45 chr13 16967607 16968020 -102776878 - HSREP522 Satellite telomeric -436 426 1 1716 213 54 16 chr13 16970106 16970593 -102774305 - L1M LINE L1 -814 5332 4844 2325 70 0 0 chr13 16970593 16970877 -102774021 + AluYa5 SINE Alu 19 302 -9 207 0 0 0 chr13 16971417 16971440 -102773458 + (A)n Simple_repeat Simple_repeat 1 23 0 3448 183 19 84 chr13 16971440 16971716 -102773182 - L1 LINE L1 -1287 6278 5986 2256 114 0 0 chr13 16971716 16972024 -102772874 - AluSg SINE Alu -2 308 1 3448 183 19 84 chr13 16972024 16972682 -102772216 - L1 LINE L1 -1579 5986 5405 2087 288 64 51 chr13 16972665 16972889 -102772009 - L1 LINE L1 -5176 2389 2170 * 279 0 0 0 chr13 16972889 16972920 -102771978 + (TG)n Simple_repeat Simple_repeat 1 31 0 1965 153 0 0 chr13 16972923 16973205 -102771693 - AluSx SINE Alu -30 282 1 2087 288 64 51 chr13 16973205 16974649 -102770249 - L1 LINE L1 -5396 2169 17 * 2846 268 65 25 chr13 16974647 16975975 -102768923 - L1M4 LINE L1 -1635 4511 3130 1900 126 25 0 chr13 16975975 16976280 -102768618 - AluSx SINE Alu 0 312 1 1658 191 3 13 chr13 16977452 16977756 -102767142 + AluSx SINE Alu 1 301 -11 21 0 0 0 chr13 16977991 16978012 -102766886 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr13 16978049 16978070 -102766828 + AT_rich Low_complexity Low_complexity 1 21 0 28 61 0 0 chr13 16983711 16983760 -102761138 + AT_rich Low_complexity Low_complexity 1 49 0 188 67 33 0 chr13 16984683 16984713 -102760185 + (TAAAA)n Simple_repeat Simple_repeat 5 35 0 1151 136 10 40 chr13 16984713 16984911 -102759987 + AluSg/x SINE Alu 106 297 -12 261 331 54 0 chr13 16984911 16985040 -102759858 - L1ME LINE L1 -486 5635 5497 289 96 96 0 chr13 16985196 16985248 -102759650 - Charlie7 DNA MER1_type 0 2612 2556 795 162 5 136 chr13 16985257 16985448 -102759450 + FAM SINE Alu 1 40 -9 228 111 0 0 chr13 16985711 16985747 -102759151 + (TG)n Simple_repeat Simple_repeat 2 37 0 1775 151 7 7 chr13 16985748 16986033 -102758865 - AluSx SINE Alu -27 285 1 2218 104 3 0 chr13 16986189 16986486 -102758412 + AluY SINE Alu 1 298 -13 301 330 71 9 chr13 16987347 16987459 -102757439 + L2 LINE L2 3151 3269 -3 234 0 0 0 chr13 16987649 16987675 -102757223 + (TAAA)n Simple_repeat Simple_repeat 2 27 0 812 191 0 0 chr13 16987675 16987801 -102757097 + AluSg/x SINE Alu 137 262 -50 216 0 0 0 chr13 16987801 16987825 -102757073 + (TAAA)n Simple_repeat Simple_repeat 1 24 0 526 338 102 3 chr13 16987844 16988128 -102756770 - L2 LINE L2 -174 3139 2828 268 295 27 36 chr13 16988215 16988327 -102756571 + (CAGAGA)n Simple_repeat Simple_repeat 4 114 0 1764 191 23 22 chr13 16988328 16988702 -102756196 - MLT2C1 LTR ERVL -20 444 1 301 330 71 9 chr13 16989886 16989998 -102754900 + L2 LINE L2 3151 3269 -3 453 241 54 30 chr13 16990569 16990735 -102754163 + L1ME4a LINE L1 5950 6119 -2 2011 132 0 14 chr13 16990736 16991052 -102753846 - AluSx SINE Alu 0 312 1 1992 135 10 0 chr13 16991831 16992119 -102752779 + AluSg SINE Alu 1 291 -19 8891 114 31 22 chr13 16992155 16992944 -102751954 - HSMAR1 DNA Mariner 0 1287 481 2138 128 0 0 chr13 16992944 16993241 -102751657 + AluSx SINE Alu 1 297 -15 8891 114 31 22 chr13 16993241 16993727 -102751171 - HSMAR1 DNA Mariner -806 481 1 28 61 0 0 chr13 16993861 16993910 -102750988 + AT_rich Low_complexity Low_complexity 1 49 0 2387 97 0 3 chr13 16993962 16994272 -102750626 - AluSc SINE Alu 0 309 1 1563 156 52 0 chr13 16994327 16994628 -102750270 - AluSx SINE Alu 0 315 1 860 211 12 0 chr13 16994854 16995042 -102749856 - AluSg/x SINE Alu 0 303 114 968 150 36 74 chr13 16995175 16995289 -102749609 - L1PA16 LINE L1 0 6154 6037 1629 187 3 0 chr13 16995289 16995583 -102749315 - AluJb SINE Alu -13 299 5 968 150 36 74 chr13 16995583 16995763 -102749135 - L1PA16 LINE L1 -117 6037 5806 758 143 59 0 chr13 16996135 16996254 -102748644 - AluJb SINE Alu -185 127 2 745 125 29 0 chr13 16996496 16996600 -102748298 - U6 snRNA snRNA 0 107 1 4844 213 57 29 chr13 16996630 16997857 -102747041 - Charlie1a DNA MER1_type -193 1262 1 391 272 32 38 chr13 16998156 16998314 -102746584 - HERV16 LTR ERVL -4479 517 361 239 54 27 0 chr13 16998464 16998501 -102746397 + (TA)n Simple_repeat Simple_repeat 2 39 0 630 303 56 8 chr13 16998690 16998924 -102745974 - LTR16C LTR ERVL -8 483 239 568 276 129 42 chr13 16999234 16999911 -102744987 + L1ME LINE L1 4955 5704 -460 559 274 88 0 chr13 16999969 17000178 -102744720 + MIR SINE MIR 28 255 -7 266 241 0 76 chr13 17000300 17000379 -102744519 + MIR SINE MIR 153 225 -37 855 114 8 0 chr13 17000477 17000608 -102744290 + L1P4 LINE L1 5317 5448 -715 402 255 84 60 chr13 17000623 17001412 -102743486 + HSREP522 Satellite telomeric 1 807 -123 204 182 15 61 chr13 17001817 17001883 -102743015 + (TTGGGG)n Simple_repeat Simple_repeat 2 64 0 205 177 30 79 chr13 17003216 17003667 -102741231 + (TTATA)n Simple_repeat Simple_repeat 3 158 0 302 191 48 34 chr13 17003279 17003291 -102741607 + (TA)n Simple_repeat Simple_repeat 2 12 -138 2032 125 3 0 chr13 17003291 17003579 -102741319 - AluSx SINE Alu -23 289 1 302 191 48 34 chr13 17003579 17003713 -102741185 + (TA)n Simple_repeat Simple_repeat 12 150 0 25 65 0 0 chr13 17004649 17004695 -102740203 + AT_rich Low_complexity Low_complexity 1 46 0 207 271 0 0 chr13 17004772 17004820 -102740078 - L2 LINE L2 -1 3271 3224 194 246 0 49 chr13 17005222 17005283 -102739615 - L2 LINE L2 -12 3301 3244 459 239 63 28 chr13 17005283 17005425 -102739473 - MER104 DNA Tc2 0 180 34 1804 169 0 7 chr13 17005525 17005821 -102739077 + AluJo SINE Alu 1 294 -18 452 280 168 19 chr13 17005825 17006044 -102738854 - MIR SINE MIR -11 251 4 219 282 122 53 chr13 17007726 17007857 -102737041 - MER5A DNA MER1_type 0 189 50 334 209 305 38 chr13 17007862 17007967 -102736931 + FLAM_A SINE Alu 1 133 0 21 57 0 0 chr13 17008606 17008641 -102736257 + AT_rich Low_complexity Low_complexity 1 35 0 392 275 83 21 chr13 17008867 17009102 -102735796 + MER102b DNA MER1_type 81 340 -1 21 0 0 0 chr13 17009482 17009503 -102735395 + AT_rich Low_complexity Low_complexity 1 21 0 198 266 193 28 chr13 17010165 17010274 -102734624 - L2 LINE L2 0 3272 3146 2189 115 0 0 chr13 17010973 17011260 -102733638 - AluSc SINE Alu -22 287 1 213 255 0 0 chr13 17011294 17011341 -102733557 + (TTA)n Simple_repeat Simple_repeat 2 48 0 617 158 167 0 chr13 17012196 17012310 -102732588 - FLAM_C SINE Alu 0 133 1 622 208 0 0 chr13 17013258 17013364 -102731534 + U6 snRNA snRNA 1 106 -1 191 325 91 26 chr13 17013987 17014141 -102730757 - MIR SINE MIR -42 220 57 22 0 0 0 chr13 17014628 17014650 -102730248 + AT_rich Low_complexity Low_complexity 1 22 0 21 71 0 0 chr13 17014878 17014920 -102729978 + AT_rich Low_complexity Low_complexity 1 42 0 2041 195 35 16 chr13 17014920 17015346 -102729552 - Tigger2a DNA MER2_type 0 434 1 206 139 47 0 chr13 17015598 17015641 -102729257 + (CATATA)n Simple_repeat Simple_repeat 3 47 0 847 187 0 0 chr13 17015968 17016107 -102728791 - FAM SINE Alu -25 160 22 1353 167 3 110 chr13 17016142 17016477 -102728421 - AluJb SINE Alu -13 299 1 2778 190 48 9 chr13 17016841 17017382 -102727516 - MER68 LTR ERV1 0 562 1 27 0 0 0 chr13 17017785 17017812 -102727086 + AT_rich Low_complexity Low_complexity 1 27 0 2146 119 7 10 chr13 17017935 17018245 -102726653 - AluSx SINE Alu -3 309 1 26 0 0 0 chr13 17018245 17018271 -102726627 + AT_rich Low_complexity Low_complexity 1 26 0 1918 150 17 0 chr13 17018305 17018599 -102726299 - AluSq SINE Alu -14 299 1 2645 155 0 39 chr13 17018609 17019067 -102725831 - L1MC1 LINE L1 0 6333 5894 819 128 53 0 chr13 17020071 17020204 -102724694 - Tigger7 DNA MER2_type 0 2487 2348 682 165 44 25 chr13 17020205 17020363 -102724535 + MER21A LTR ERV1 747 907 -24 584 236 0 24 chr13 17020805 17020928 -102723970 - FLAM_A SINE Alu -17 125 6 291 354 61 26 chr13 17021084 17021313 -102723585 - MIR SINE MIR -6 256 20 671 187 0 0 chr13 17024326 17024433 -102720465 + FLAM_A SINE Alu 1 107 -35 2040 125 0 39 chr13 17024686 17024991 -102719907 + AluSx SINE Alu 1 293 -19 1254 201 32 57 chr13 17025178 17025461 -102719437 - AluJb SINE Alu -24 288 13 21 89 0 0 chr13 17025557 17025613 -102719285 + AT_rich Low_complexity Low_complexity 1 56 0 6607 35 0 0 chr13 17025834 17026612 -102718286 - L1PA5 LINE L1 -1 6153 5376 1582 199 0 7 chr13 17026996 17027278 -102717620 - AluJb SINE Alu -30 282 3 1329 243 0 24 chr13 17027312 17027608 -102717290 + AluJo SINE Alu 1 289 -23 2355 94 0 0 chr13 17027802 17028100 -102716798 + AluY SINE Alu 1 298 -13 290 183 195 12 chr13 17028967 17029049 -102715849 - MER5A DNA MER1_type -83 106 10 200 196 0 0 chr13 17031224 17031270 -102713628 + (TG)n Simple_repeat Simple_repeat 1 46 0 237 306 147 12 chr13 17031673 17031843 -102713055 - Charlie1 DNA MER1_type -2563 198 6 1900 162 0 0 chr13 17032091 17032394 -102712504 - AluSx SINE Alu -4 308 6 22 56 0 0 chr13 17032506 17032542 -102712356 + AT_rich Low_complexity Low_complexity 1 36 0 1945 140 7 3 chr13 17034158 17034471 -102710427 + AluSp SINE Alu 1 314 0 1911 162 7 0 chr13 17034910 17035212 -102709686 + AluSx SINE Alu 1 304 -8 206 225 0 0 chr13 17035494 17035534 -102709364 + L2 LINE L2 3262 3301 -12 1345 251 30 0 chr13 17035755 17036054 -102708844 - AluJo SINE Alu -4 308 1 26 30 0 0 chr13 17036736 17036769 -102708129 + AT_rich Low_complexity Low_complexity 1 33 0 26 74 0 0 chr13 17037716 17037770 -102707128 + AT_rich Low_complexity Low_complexity 1 54 0 207 0 0 0 chr13 17037842 17037865 -102707033 + (A)n Simple_repeat Simple_repeat 1 23 0 607 45 23 11 chr13 17038741 17038829 -102706069 + L1PA5 LINE L1 6066 6154 0 22 35 0 0 chr13 17039761 17039790 -102705108 + AT_rich Low_complexity Low_complexity 1 29 0 24 53 0 0 chr13 17040490 17040528 -102704370 + AT_rich Low_complexity Low_complexity 1 38 0 26 64 0 0 chr13 17040604 17040651 -102704247 + AT_rich Low_complexity Low_complexity 1 47 0 1957 136 0 3 chr13 17040837 17041161 -102703737 - AluSq SINE Alu 0 323 1 527 281 60 46 chr13 17041265 17041550 -102703348 + L1MB7 LINE L1 5387 5675 -2133 21 0 0 0 chr13 17041596 17041617 -102703281 + AT_rich Low_complexity Low_complexity 1 21 0 23 0 0 0 chr13 17042543 17042566 -102702332 + AT_rich Low_complexity Low_complexity 1 23 0 5834 108 63 20 chr13 17044592 17046578 -102698320 + SVA Other Other 343 1381 -5 950 234 48 18 chr13 17047107 17047380 -102697518 + L1MB7 LINE L1 5904 6184 0 404 318 54 7 chr13 17048090 17048238 -102696660 - L2 LINE L2 -430 2884 2730 1861 215 81 26 chr13 17049310 17049803 -102695095 - L1MB8 LINE L1 -6 6172 5653 206 233 50 0 chr13 17050832 17050892 -102694006 - MIR SINE MIR -2 260 198 1466 199 7 20 chr13 17050912 17051208 -102693690 + AluJo SINE Alu 1 292 -20 2154 140 0 0 chr13 17051634 17051941 -102692957 + AluSx SINE Alu 1 307 -5 2172 118 0 3 chr13 17052291 17052587 -102692311 + AluSg SINE Alu 1 295 -15 180 232 168 42 chr13 17052923 17053018 -102691880 + L3 LINE CR1 1310 1416 -161 21 0 0 0 chr13 17053713 17053734 -102691164 + AT_rich Low_complexity Low_complexity 1 21 0 1716 133 81 3 chr13 17053734 17054019 -102690879 - AluSg SINE Alu -1 309 3 343 186 0 14 chr13 17054285 17054355 -102690543 + MER34C LTR ERV1 423 491 -94 22 35 0 0 chr13 17054360 17054389 -102690509 + AT_rich Low_complexity Low_complexity 1 29 0 2067 125 3 58 chr13 17054896 17055223 -102689675 + AluSq SINE Alu 1 309 -4 3144 113 53 0 chr13 17055613 17056082 -102688816 - L1PA10 LINE L1 -20 6148 5655 1185 234 91 25 chr13 17056178 17056542 -102688356 - MER4E LTR ERV1 -391 388 1 1241 211 68 9 chr13 17056762 17057084 -102687814 - L1MB8 LINE L1 -5 6173 5833 2110 148 78 5 chr13 17057084 17057496 -102687402 - MER61C LTR ERV1 0 434 4 2257 206 48 46 chr13 17057504 17058562 -102686336 - L1MB8 LINE L1 -342 5836 4771 702 321 77 10 chr13 17059904 17060283 -102684615 - MLT1G1 LTR MaLR -34 561 79 1220 183 73 0 chr13 17060320 17060594 -102684304 - L1MA5 LINE L1 -6 6294 6001 1015 239 31 12 chr13 17060661 17060920 -102683978 - AluJo SINE Alu -48 264 1 2997 214 27 13 chr13 17060921 17062041 -102682857 - L1MA5 LINE L1 -354 5946 4808 1469 207 14 27 chr13 17062154 17062449 -102682449 - AluJo SINE Alu -16 296 6 24 0 0 0 chr13 17063734 17063758 -102681140 + AT_rich Low_complexity Low_complexity 1 24 0 366 267 0 0 chr13 17064864 17064965 -102679933 - L1MA9 LINE L1 -49 6263 6163 638 139 0 0 chr13 17065906 17066007 -102678891 - AluSg/x SINE Alu -12 297 197 1267 105 19 43 chr13 17066107 17066317 -102678581 + AluSg/x SINE Alu 98 302 -10 1952 146 17 0 chr13 17066495 17066790 -102678108 + AluSx SINE Alu 1 300 -12 4532 172 31 18 chr13 17066826 17067955 -102676943 + L1PA16 LINE L1 5026 6165 -1 2022 135 3 0 chr13 17068114 17068402 -102676496 - AluSc SINE Alu -20 289 1 21 0 0 0 chr13 17068763 17068784 -102676114 + AT_rich Low_complexity Low_complexity 1 21 0 243 295 139 85 chr13 17069311 17069721 -102675177 + L2 LINE L2 2836 3267 -5 1192 214 231 18 chr13 17070346 17070804 -102674094 - L1MC4 LINE L1 -668 7374 6819 270 226 37 48 chr13 17071406 17071550 -102673348 - HSAT5 Satellite Satellite 0 142 1 273 238 12 18 chr13 17071818 17071914 -102672984 - HSAT5 Satellite Satellite 0 95 1 265 258 0 15 chr13 17072326 17072392 -102672506 + (CA)n Simple_repeat Simple_repeat 2 66 0 2087 108 87 44 chr13 17072619 17073055 -102671843 - SN5 Other centromeric 0 455 1 1201 253 72 3 chr13 17075137 17075442 -102669456 + MSTA LTR MaLR 1 326 -102 1217 184 21 4 chr13 17075498 17075732 -102669166 + MSTA-int LTR MaLR 13 250 -1401 * 1408 151 12 16 chr13 17075729 17075981 -102668917 + MSTA-int LTR MaLR 1401 1651 0 1321 240 26 47 chr13 17075981 17076365 -102668533 + MSTA LTR MaLR 1 376 -52 407 223 187 0 chr13 17076390 17076529 -102668369 - MST-int LTR MaLR -981 670 506 338 244 0 0 chr13 17076526 17076608 -102668290 + MSTA-int LTR MaLR 28 109 -1542 * 301 179 18 0 chr13 17076739 17076795 -102668103 + MSTA-int LTR MaLR 911 967 -613 * 838 211 198 21 chr13 17076783 17077025 -102667873 - THE1-int LTR MaLR -389 1191 907 1242 200 64 7 chr13 17077030 17077310 -102667588 + MSTA LTR MaLR 77 372 -56 521 212 167 0 chr13 17077348 17077480 -102667418 - MST-int LTR MaLR -991 660 507 5490 235 64 22 chr13 17077482 17079037 -102665861 + MSTA-int LTR MaLR 32 1651 0 372 215 0 0 chr13 17079311 17079376 -102665522 + MSTA LTR MaLR 95 159 -269 1409 215 6 41 chr13 17079383 17079727 -102665171 + MSTA-int LTR MaLR 1318 1649 -2 471 208 10 0 chr13 17079729 17079825 -102665073 + MSTA LTR MaLR 1 97 -331 249 182 36 18 chr13 17079921 17079976 -102664922 + THE1-int LTR MaLR 911 966 -614 671 234 191 26 chr13 17079978 17080209 -102664689 - THE1-int LTR MaLR -405 1175 907 1073 231 56 7 chr13 17080231 17080500 -102664398 + MSTA LTR MaLR 95 376 -52 508 240 32 26 chr13 17080517 17080671 -102664227 - THE1-int LTR MaLR -963 617 463 * 5596 216 53 47 chr13 17080666 17082212 -102662686 + MSTA-int LTR MaLR 28 1583 -68 343 159 0 48 chr13 17082284 17082347 -102662551 - MSTA LTR MaLR -52 376 317 388 158 26 0 chr13 17082349 17082425 -102662473 + MSTA-int LTR MaLR 1574 1651 0 365 263 10 0 chr13 17082425 17082524 -102662374 + MSTA LTR MaLR 1 100 -328 312 243 149 0 chr13 17082569 17082676 -102662222 + MSTA LTR MaLR 58 180 -248 1434 196 6 44 chr13 17082676 17083017 -102661881 + MSTA-int LTR MaLR 1324 1651 0 555 135 21 10 chr13 17083017 17083113 -102661785 + MSTA LTR MaLR 1 97 -331 231 236 18 0 chr13 17083198 17083253 -102661645 + THE1-int LTR MaLR 911 966 -614 686 242 186 22 chr13 17083255 17083486 -102661412 - THE1-int LTR MaLR -405 1175 907 947 267 49 8 chr13 17083513 17083779 -102661119 + MSTA LTR MaLR 98 374 -54 332 244 170 7 chr13 17083817 17083952 -102660946 - MST-int LTR MaLR -992 659 503 5923 231 53 23 chr13 17083952 17085523 -102659375 + MSTA-int LTR MaLR 34 1651 0 360 261 10 2 chr13 17085523 17085645 -102659253 + MSTA LTR MaLR 1 122 -304 354 197 28 14 chr13 17085945 17086016 -102658882 - THE1-int LTR MaLR -602 978 907 1073 231 56 7 chr13 17086038 17086307 -102658591 + MSTA LTR MaLR 95 376 -52 508 240 32 26 chr13 17086324 17086478 -102658420 - THE1-int LTR MaLR -963 617 463 * 5576 224 48 48 chr13 17086473 17088029 -102656869 + MSTA-int LTR MaLR 28 1583 -68 259 128 0 0 chr13 17088029 17088068 -102656830 + MST-int LTR MaLR 623 661 -990 341 159 0 48 chr13 17088102 17088165 -102656733 - MSTA LTR MaLR -52 376 317 352 160 40 0 chr13 17088167 17088242 -102656656 + MST-int LTR MaLR 1574 1651 0 390 253 10 0 chr13 17088242 17088341 -102656557 + MSTA LTR MaLR 1 100 -328 352 213 148 9 chr13 17088386 17088494 -102656404 + MSTA LTR MaLR 58 180 -248 1372 220 3 41 chr13 17088494 17088835 -102656063 + MSTA-int LTR MaLR 1324 1651 0 508 156 21 10 chr13 17088835 17088931 -102655967 + MSTA LTR MaLR 1 97 -331 734 206 228 21 chr13 17089064 17089297 -102655601 - THE1-int LTR MaLR -393 1187 907 994 232 62 28 chr13 17089301 17089590 -102655308 + MSTA LTR MaLR 76 374 -54 384 232 163 2 chr13 17089608 17089760 -102655138 - MST-int LTR MaLR -963 661 463 * 6106 230 56 23 chr13 17089755 17091327 -102653571 + MSTA-int LTR MaLR 28 1651 0 432 208 10 0 chr13 17091327 17091423 -102653475 + MSTA LTR MaLR 1 97 -331 460 167 23 5 chr13 17091582 17091686 -102653212 - MSTA LTR MaLR -262 113 3 1242 214 16 38 chr13 17091688 17092006 -102652892 - MSTA-int LTR MaLR 0 1651 1341 293 260 55 14 chr13 17092013 17092086 -102652812 - MSTA LTR MaLR -258 170 95 338 154 0 0 chr13 17092269 17092321 -102652577 + MSTA LTR MaLR 325 376 -52 5531 228 53 37 chr13 17092394 17093925 -102650973 - MSTA-int LTR MaLR -68 1583 28 504 237 33 26 chr13 17093920 17094072 -102650826 + THE1-int LTR MaLR 463 615 -965 * 1058 243 56 4 chr13 17094091 17094358 -102650540 - MSTA LTR MaLR -52 376 96 674 225 191 26 chr13 17094382 17094613 -102650285 + THE1-int LTR MaLR 907 1175 -405 257 164 36 18 chr13 17094615 17094670 -102650228 - THE1-int LTR MaLR -614 966 911 460 167 23 5 chr13 17094758 17094862 -102650036 - MSTA LTR MaLR -262 113 3 1240 195 25 47 chr13 17094864 17095182 -102649716 - MSTA-int LTR MaLR 0 1651 1341 258 229 41 107 chr13 17095188 17095310 -102649588 - MSTA LTR MaLR -257 171 58 471 208 10 0 chr13 17095335 17095431 -102649467 - MSTA LTR MaLR -331 97 1 538 198 27 0 chr13 17095431 17095542 -102649356 - MSTA-int LTR MaLR 0 1651 1538 207 204 46 56 chr13 17095554 17095662 -102649236 + (CCCCAA)n Simple_repeat Simple_repeat 3 109 0 385 232 11 0 chr13 17095665 17095760 -102649138 - MSTA LTR MaLR -328 100 5 6001 233 52 22 chr13 17095762 17097332 -102647566 - MSTA-int LTR MaLR 0 1651 34 317 255 152 9 chr13 17097332 17097487 -102647411 + MST-int LTR MaLR 462 661 -963 969 221 62 28 chr13 17097505 17097794 -102647104 - MSTA LTR MaLR -54 374 76 700 247 169 50 chr13 17097798 17098077 -102646821 + THE1-int LTR MaLR 907 1218 -362 282 214 18 0 chr13 17098030 17098086 -102646812 - THE1-int LTR MaLR -613 967 911 * 555 135 21 10 chr13 17098171 17098267 -102646631 - MSTA LTR MaLR -331 97 1 1352 214 3 41 chr13 17098267 17098608 -102646290 - MSTA-int LTR MaLR 0 1651 1324 355 208 160 0 chr13 17098608 17098714 -102646184 - MSTA LTR MaLR -248 180 58 997 166 6 6 chr13 17098855 17099018 -102645880 - AluSx SINE Alu -149 163 1 21 36 0 0 chr13 17099313 17099341 -102645557 + AT_rich Low_complexity Low_complexity 1 28 0 23 68 0 0 chr13 17100494 17100538 -102644360 + AT_rich Low_complexity Low_complexity 1 44 0 21 0 0 0 chr13 17100917 17100938 -102643960 + AT_rich Low_complexity Low_complexity 1 21 0 208 313 0 0 chr13 17101454 17101502 -102643396 - L2 LINE L2 -15 3257 3210 507 123 0 0 chr13 17101541 17101614 -102643284 + MADE1 DNA Mariner 3 75 -5 823 219 101 6 chr13 17102550 17102719 -102642179 - MER5A DNA MER1_type -4 185 1 226 200 100 78 chr13 17103577 17103667 -102641231 + MARNA DNA Mariner 15 106 -480 1432 222 134 43 chr13 17104009 17104710 -102640188 + LTR1B LTR ERV1 137 826 0 431 257 9 0 chr13 17104966 17105079 -102639819 - LTR43 LTR ERV1 -306 296 183 2112 110 43 3 chr13 17105670 17105970 -102638928 - AluSq SINE Alu -1 312 1 21 36 0 0 chr13 17106025 17106053 -102638845 + AT_rich Low_complexity Low_complexity 1 28 0 881 160 0 0 chr13 17106053 17106178 -102638720 - FLAM_C SINE Alu -18 125 1 306 366 0 7 chr13 17106760 17106902 -102637996 - HERV16 LTR ERVL -4335 661 521 2218 105 3 7 chr13 17106962 17107266 -102637632 - AluSp SINE Alu 0 313 11 1587 184 153 22 chr13 17107518 17107931 -102636967 - MLT1C LTR MaLR 0 467 1 572 257 161 8 chr13 17108115 17108364 -102636534 - LTR16A1 LTR ERVL -3 454 168 228 258 30 0 chr13 17109354 17109420 -102635478 - MIR SINE MIR -131 131 64 21 0 0 0 chr13 17109420 17109441 -102635457 + AT_rich Low_complexity Low_complexity 1 21 0 200 236 32 38 chr13 17110727 17110884 -102634014 + (TTATA)n Simple_repeat Simple_repeat 4 159 0 4583 194 31 28 chr13 17111733 17112621 -102632277 - MER54A LTR ERVL -1 900 10 722 164 0 0 chr13 17113452 17113568 -102631330 + AluJb SINE Alu 2 117 -195 1512 314 77 33 chr13 17113956 17115060 -102629838 + L2 LINE L2 2157 3305 -8 2208 113 0 3 chr13 17115205 17115498 -102629400 + AluSg SINE Alu 1 292 -18 7274 58 7 0 chr13 17115920 17117611 -102627287 - L1PA6 LINE L1 -5 6149 4451 3987 120 43 52 chr13 17117738 17118660 -102626238 - MER11A LTR ERVK -326 910 1 20163 103 15 8 chr13 17118661 17122961 -102621937 - L1P LINE L1 -1809 4337 13 1651 231 47 42 chr13 17123076 17123670 -102621228 + L1M4 LINE L1 4629 5225 -921 1232 125 11 0 chr13 17123670 17123854 -102621044 + AluSg/x SINE Alu 117 302 -10 419 233 35 0 chr13 17123938 17124110 -102620788 + (TA)n Simple_repeat Simple_repeat 2 179 0 182 329 12 12 chr13 17125624 17125709 -102619189 + MIR SINE MIR 116 200 -62 2041 134 10 3 chr13 17125753 17126059 -102618839 - AluJb SINE Alu -1 311 4 378 228 147 52 chr13 17126331 17126467 -102618431 + L2 LINE L2 3119 3267 -46 2166 119 0 0 chr13 17126503 17126806 -102618092 + AluSx SINE Alu 1 303 -9 286 240 80 0 chr13 17126836 17126911 -102617987 - MIR SINE MIR -70 192 112 189 0 0 0 chr13 17126945 17126966 -102617932 + (CAAAA)n Simple_repeat Simple_repeat 5 25 0 1659 169 34 7 chr13 17127053 17127348 -102617550 + AluJb SINE Alu 1 303 -9 2146 114 0 3 chr13 17127660 17127959 -102616939 - AluSp SINE Alu -15 298 1 245 27 54 0 chr13 17127962 17127999 -102616899 + (TTTTA)n Simple_repeat Simple_repeat 2 40 0 279 128 85 0 chr13 17128002 17128049 -102616849 - AluJ/FRAM SINE Alu -23 279 229 28 79 0 0 chr13 17130154 17130217 -102614681 + AT_rich Low_complexity Low_complexity 1 63 0 389 20 20 0 chr13 17130394 17130444 -102614454 + (TTTA)n Simple_repeat Simple_repeat 1 51 0 953 74 8 8 chr13 17130444 17130560 -102614338 - AluY SINE Alu -195 116 1 308 286 63 17 chr13 17134663 17134838 -102610060 - HERV16 LTR ERVL -2033 2963 2781 205 365 0 48 chr13 17135889 17136015 -102608883 + MIR SINE MIR 32 151 -57 399 249 52 55 chr13 17136267 17136556 -102608342 - L1ME3A LINE L1 -180 5990 5657 245 222 0 0 chr13 17137048 17137093 -102607805 - L1ME3A LINE L1 -501 5669 5625 448 296 29 6 chr13 17137170 17137342 -102607556 - L1MC4 LINE L1 -143 7899 7724 673 219 55 7 chr13 17137998 17138144 -102606754 - L1MC4a LINE L1 -1052 6756 6604 214 309 48 67 chr13 17138695 17138905 -102605993 - L2 LINE L2 -1857 1457 1252 699 258 6 0 chr13 17138967 17139126 -102605772 - MER5B DNA MER1_type -18 160 1 533 103 0 13 chr13 17139427 17139505 -102605393 - MADE1 DNA Mariner -3 77 1 332 333 6 51 chr13 17139997 17140153 -102604745 - MIR3 SINE MIR -5 203 55 223 308 88 33 chr13 17141547 17141729 -102603169 + L3 LINE CR1 1216 1407 -170 279 226 43 96 chr13 17142137 17142252 -102602646 + MIR SINE MIR 112 220 -42 24 53 0 0 chr13 17145922 17145960 -102598938 + AT_rich Low_complexity Low_complexity 1 38 0 1022 136 22 33 chr13 17147556 17147740 -102597158 - MER49 LTR ERV1 -27 896 715 13611 44 2 1 chr13 17148890 17151237 -102593661 + L1PA5 LINE L1 3797 6145 -9 2043 104 32 26 chr13 17152027 17152336 -102592562 + AluY SINE Alu 1 311 0 1886 148 51 46 chr13 17152849 17153221 -102591677 + THE1C LTR MaLR 2 375 0 365 215 0 0 chr13 17153221 17153286 -102591612 + THE1C-int LTR MaLR 1 65 -1515 6623 156 18 7 chr13 17153286 17154430 -102590468 + THE1C-int LTR MaLR 215 1422 -158 313 173 0 0 chr13 17155505 17155557 -102589341 + MER51D LTR ERV1 500 551 -106 1976 136 3 10 chr13 17155669 17155970 -102588928 + AluSq SINE Alu 1 299 -14 8342 101 4 1 chr13 17156534 17157602 -102587296 - MER11C LTR ERVK 0 1071 1 21 71 0 0 chr13 17157657 17157699 -102587199 + AT_rich Low_complexity Low_complexity 1 42 0 2046 138 0 0 chr13 17157801 17158092 -102586806 + AluSq SINE Alu 1 291 -22 3013 21 0 0 chr13 17158436 17158763 -102586135 - L1PA2 LINE L1 0 6155 5829 3613 30 0 5 chr13 17158763 17159192 -102585706 + L1P LINE L1 4778 5204 -942 21 0 0 0 chr13 17159307 17159328 -102585570 + AT_rich Low_complexity Low_complexity 1 21 0 21 36 0 0 chr13 17159468 17159496 -102585402 + AT_rich Low_complexity Low_complexity 1 28 0 2395 82 0 3 chr13 17159700 17160006 -102584892 - AluY SINE Alu -6 305 1 1232 126 6 0 chr13 17161329 17161503 -102583395 + AluSx SINE Alu 1 175 -137 24 67 0 0 chr13 17161823 17161868 -102583030 + AT_rich Low_complexity Low_complexity 1 45 0 1127 152 162 0 chr13 17162497 17162695 -102582203 + MER30 DNA MER1_type 1 230 0 3703 197 43 22 chr13 17162897 17163724 -102581174 - L1PA16 LINE L1 -5 6161 5317 5342 264 51 19 chr13 17163725 17164181 -102580717 - L1 LINE L1 -864 5282 4842 198 0 0 0 chr13 17164181 17164203 -102580695 + (TG)n Simple_repeat Simple_repeat 2 23 0 5342 264 51 19 chr13 17164203 17165658 -102579240 - L1 LINE L1 -1304 4842 3310 4191 230 80 29 chr13 17165669 17165864 -102579034 + L1MA8 LINE L1 3897 4081 -2219 2133 116 3 0 chr13 17165864 17166158 -102578740 - AluY SINE Alu -16 295 1 4191 230 80 29 chr13 17166158 17167900 -102576998 + L1MA8 LINE L1 4081 5941 -359 582 209 173 4 chr13 17167911 17168136 -102576762 + L1MA8 LINE L1 6025 6287 -4 2084 136 0 0 chr13 17168879 17169166 -102575732 - AluSc SINE Alu -16 293 7 1965 156 0 7 chr13 17169859 17170166 -102574732 + AluSg SINE Alu 5 309 -1 901 162 37 11 chr13 17170800 17170991 -102573907 + L1MA3 LINE L1 6110 6305 0 377 305 145 26 chr13 17175472 17175823 -102569075 + L1MB2 LINE L1 1076 1468 -4845 1307 232 21 7 chr13 17175838 17176122 -102568776 + AluJb SINE Alu 1 288 -24 529 306 70 10 chr13 17176124 17176523 -102568375 + L1MB2 LINE L1 1318 1740 -4644 681 288 121 24 chr13 17176658 17177081 -102567817 + L1MB2 LINE L1 1963 2426 -3958 308 266 57 95 chr13 17177111 17177560 -102567338 + L1MB2 LINE L1 2445 2910 -3472 2179 112 10 0 chr13 17177560 17177865 -102567033 + AluY SINE Alu 1 308 -3 308 266 57 95 chr13 17177865 17177890 -102567008 + L1MB2 LINE L1 2910 2934 -3448 1838 156 31 0 chr13 17177890 17178179 -102566719 + AluSx SINE Alu 12 309 -3 308 266 57 95 chr13 17178179 17178454 -102566444 + L1MB2 LINE L1 2934 3137 -3245 620 264 52 18 chr13 17178457 17178786 -102566112 + L1MB2 LINE L1 4747 5086 -1296 945 267 54 43 chr13 17178789 17178812 -102566086 + L1MB2 LINE L1 5911 5932 -475 2169 108 0 7 chr13 17178812 17179108 -102565790 - AluY SINE Alu -17 294 1 945 267 54 43 chr13 17179108 17179252 -102565646 + L1MB2 LINE L1 5932 6073 -334 1882 143 17 10 chr13 17179252 17179545 -102565353 + AluSp SINE Alu 1 295 -18 945 267 54 43 chr13 17179545 17179841 -102565057 + L1MB2 LINE L1 6073 6380 -27 361 287 46 63 chr13 17180232 17180254 -102564644 + L1MB2 LINE L1 1649 1670 -5180 2294 83 0 17 chr13 17180254 17180599 -102564299 + AluY SINE Alu 1 311 0 361 287 46 63 chr13 17180599 17180750 -102564148 + L1MB2 LINE L1 1670 1819 -5031 236 262 12 12 chr13 17180810 17180894 -102564004 + L1MB2 LINE L1 2513 2596 -4253 525 259 0 9 chr13 17180901 17181017 -102563881 + FLAM_C SINE Alu 1 115 -28 2021 125 0 4 chr13 17181275 17181591 -102563307 + AluSg1 SINE Alu 3 317 0 379 268 66 36 chr13 17181605 17181967 -102562931 + L1MB2 LINE L1 2556 2928 -3922 496 185 0 0 chr13 17182051 17182132 -102562766 + AluJ/FLAM SINE Alu 4 84 -228 685 278 71 44 chr13 17182152 17182505 -102562393 + L1MB2 LINE L1 2963 3305 -3543 1927 218 36 2 chr13 17182505 17182917 -102561981 - MSTB LTR MaLR 0 426 1 685 278 71 44 chr13 17182917 17183047 -102561851 + L1MB2 LINE L1 3305 3430 -3418 1401 214 30 10 chr13 17183047 17183351 -102561547 + AluJb SINE Alu 1 310 -2 685 278 71 44 chr13 17183351 17183474 -102561424 + L1MB2 LINE L1 3430 3586 -3262 1057 276 86 20 chr13 17183604 17184439 -102560459 + L1MB2 LINE L1 5378 6266 -607 22 0 0 0 chr13 17184458 17184480 -102560418 + AT_rich Low_complexity Low_complexity 1 22 0 33 25 0 0 chr13 17184526 17184566 -102560332 + AT_rich Low_complexity Low_complexity 1 40 0 324 124 66 0 chr13 17184707 17184844 -102560054 + (TA)n Simple_repeat Simple_repeat 2 147 0 204 125 62 0 chr13 17184861 17184909 -102559989 + (TA)n Simple_repeat Simple_repeat 2 52 0 1521 202 51 33 chr13 17184909 17185324 -102559574 + L1MB2 LINE L1 6375 6802 -71 1271 243 7 10 chr13 17185324 17185612 -102559286 - AluJo SINE Alu -24 288 2 1521 202 51 33 chr13 17185612 17185667 -102559231 + L1MB2 LINE L1 6802 6855 -18 1905 103 4 8 chr13 17185885 17186147 -102558751 + AluSq SINE Alu 1 261 -52 429 353 20 5 chr13 17186156 17186357 -102558541 + L1MA9 LINE L1 348 551 -5404 402 288 31 18 chr13 17186488 17186651 -102558247 + L1MA9 LINE L1 701 865 -5090 3410 232 51 17 chr13 17186656 17188774 -102556124 + L1MA9 LINE L1 3981 6175 -25 22 35 0 0 chr13 17188849 17188878 -102556020 + AT_rich Low_complexity Low_complexity 1 29 0 203 413 0 0 chr13 17189331 17189406 -102555492 - L2 LINE L2 -498 2816 2742 357 342 161 0 chr13 17190652 17190813 -102554085 - MER5A DNA MER1_type -1 188 2 429 216 92 60 chr13 17190959 17191177 -102553721 + L1MC4 LINE L1 7281 7505 -537 2247 98 0 29 chr13 17191509 17191824 -102553074 - AluSx SINE Alu -6 306 1 235 331 162 7 chr13 17192678 17192826 -102552072 - MER5A DNA MER1_type 0 189 19 252 216 18 108 chr13 17193043 17193154 -102551744 - MIR SINE MIR -9 253 153 1996 127 3 3 chr13 17193238 17193521 -102551377 - AluSp SINE Alu -30 283 1 2219 174 16 5 chr13 17195245 17195677 -102549221 - LTR56 LTR ERV1 0 445 9 1370 180 26 16 chr13 17196167 17196595 -102548303 - MER67C LTR ERV1 -1 709 218 2051 119 10 0 chr13 17197501 17197796 -102547102 + AluSx SINE Alu 1 298 -14 2153 124 3 10 chr13 17197833 17198140 -102546758 - AluSp SINE Alu -8 305 1 22 0 0 0 chr13 17198478 17198500 -102546398 + AT_rich Low_complexity Low_complexity 1 22 0 1215 49 0 19 chr13 17198500 17198662 -102546236 - L1PA4 LINE L1 -1 6154 5996 695 131 4 0 chr13 17198667 17208278 -102536620 - CER Satellite Satellite 0 9649 1 40398 56 3 2 chr13 17208301 17214453 -102530445 + L1PA4 LINE L1 9 6164 0 328 272 108 52 chr13 17214536 17214749 -102530149 + L1MDa LINE L1 1514 1738 -4802 252 300 70 19 chr13 17214797 17215007 -102529891 + L1MDa LINE L1 1657 2080 -4641 21 0 0 0 chr13 17215156 17215177 -102529721 + AT_rich Low_complexity Low_complexity 1 21 0 24 0 0 0 chr13 17215293 17215317 -102529581 + AT_rich Low_complexity Low_complexity 1 24 0 361 233 39 23 chr13 17215571 17215700 -102529198 + L1MEc LINE L1 55 185 -6211 731 320 64 63 chr13 17215825 17216705 -102528193 + L1MEc LINE L1 351 1222 -4983 765 150 23 0 chr13 17216786 17216919 -102527979 - MSTB1 LTR MaLR -296 136 1 232 164 14 14 chr13 17218184 17218257 -102526641 + (TA)n Simple_repeat Simple_repeat 2 74 0 1391 181 87 56 chr13 17218291 17218673 -102526225 - LTR49 LTR ERV1 -168 427 30 2017 122 7 4 chr13 17218673 17218952 -102525946 + AluSq SINE Alu 14 293 -20 1391 181 87 56 chr13 17218952 17218983 -102525915 - LTR49 LTR ERV1 -565 30 1 21 57 0 0 chr13 17219376 17219411 -102525487 + AT_rich Low_complexity Low_complexity 1 35 0 25 51 0 0 chr13 17219438 17219477 -102525421 + AT_rich Low_complexity Low_complexity 1 39 0 461 246 144 5 chr13 17219963 17220150 -102524748 + MER20 DNA MER1_type 4 216 -3 1775 163 58 21 chr13 17220290 17220719 -102524179 - LTR56 LTR ERV1 0 445 1 2212 187 91 11 chr13 17220903 17221453 -102523445 - LTR49 LTR ERV1 -1 594 1 31 58 0 0 chr13 17222019 17222071 -102522827 + AT_rich Low_complexity Low_complexity 1 52 0 317 263 26 20 chr13 17222228 17222380 -102522518 + (TA)n Simple_repeat Simple_repeat 1 153 0 26 0 0 0 chr13 17222495 17222521 -102522377 + AT_rich Low_complexity Low_complexity 1 26 0 14049 40 1 0 chr13 17222609 17224353 -102520545 - L1PA2 LINE L1 -1961 4185 2440 9981 31 0 2 chr13 17224353 17226320 -102518578 + L1PA2 LINE L1 4190 6155 0 22 35 0 0 chr13 17226320 17226349 -102518549 + AT_rich Low_complexity Low_complexity 1 29 0 189 0 0 0 chr13 17226416 17226437 -102518461 + (TAAAA)n Simple_repeat Simple_repeat 2 22 0 1367 253 46 10 chr13 17227153 17227568 -102517330 - MER54A LTR ERVL 0 901 472 2197 118 74 15 chr13 17227606 17227944 -102516954 - THE1B LTR MaLR 0 364 7 1626 214 51 2 chr13 17227953 17228346 -102516552 - MER54A LTR ERVL -489 412 1 22 0 0 0 chr13 17229520 17229542 -102515356 + AT_rich Low_complexity Low_complexity 1 22 0 1553 203 0 11 chr13 17229542 17229823 -102515075 - AluJo SINE Alu -24 288 11 1314 242 41 70 chr13 17230810 17231052 -102513846 - MLT1D LTR MaLR 0 505 257 2141 110 7 0 chr13 17231052 17231343 -102513555 - AluY SINE Alu -16 295 3 1314 242 41 70 chr13 17231343 17231616 -102513282 - MLT1D LTR MaLR -248 257 5 472 213 22 0 chr13 17231711 17231847 -102513051 + GA-rich Low_complexity Low_complexity 2 140 0 1936 234 42 75 chr13 17231853 17232451 -102512447 + MER77 LTR ERV1 22 599 -6 901 271 64 23 chr13 17233587 17234265 -102510633 - L1MEc LINE L1 -3483 2732 2046 3402 243 41 30 chr13 17234265 17235203 -102509695 + Tigger6a DNA MER2_type 2 955 -642 1704 192 3 7 chr13 17235203 17235510 -102509388 - AluJb SINE Alu -6 306 1 3402 243 41 30 chr13 17235510 17235641 -102509257 + Tigger6a DNA MER2_type 955 1083 0 901 271 64 23 chr13 17235641 17235718 -102509180 - L1MEc LINE L1 -4169 2046 1974 5252 170 8 22 chr13 17235766 17236942 -102507956 + L1PA16 LINE L1 5007 6165 -1 286 254 65 113 chr13 17236948 17237122 -102507776 - L1MEc LINE L1 -4417 1979 1798 2294 114 0 0 chr13 17237122 17237429 -102507469 - AluSg SINE Alu -3 307 1 286 254 65 113 chr13 17237429 17237510 -102507388 - L1MEc LINE L1 -4598 1798 1715 3423 29 0 17 chr13 17237510 17237930 -102506968 + L1PA4 LINE L1 5740 6152 -3 286 254 65 113 chr13 17237930 17238240 -102506658 - L1MEc LINE L1 -4681 1715 1440 330 320 77 6 chr13 17238261 17238417 -102506481 - L1MEc LINE L1 -4868 1245 1079 1032 322 67 19 chr13 17238429 17239158 -102505740 - L1MEc LINE L1 -5483 913 150 250 315 28 42 chr13 17239275 17239418 -102505480 - HAL1b LINE L1 -963 385 245 1369 209 21 78 chr13 17241156 17241543 -102503355 - MLT1A1 LTR MaLR 0 365 1 1985 140 64 3 chr13 17241677 17242020 -102502878 + THE1B LTR MaLR 1 364 0 1850 138 32 11 chr13 17242254 17242537 -102502361 - AluSg SINE Alu -21 289 1 306 338 29 43 chr13 17242641 17242780 -102502118 + MER5A DNA MER1_type 52 188 -1 1117 72 0 0 chr13 17243572 17243711 -102501187 - AluY SINE Alu -17 294 156 243 0 0 0 chr13 17244844 17244871 -102500027 + (T)n Simple_repeat Simple_repeat 1 27 0 318 303 113 21 chr13 17245888 17246126 -102498772 + MIR SINE MIR 3 262 0 2449 69 0 10 chr13 17246549 17246852 -102498046 + AluY SINE Alu 1 300 -11 196 313 15 30 chr13 17247133 17247200 -102497698 + MIR SINE MIR 182 247 -15 304 270 40 43 chr13 17247411 17247616 -102497282 + MIR SINE MIR 8 262 0 201 176 0 0 chr13 17249022 17249056 -102495842 + (TTTA)n Simple_repeat Simple_repeat 4 37 0 2136 67 0 39 chr13 17249114 17249399 -102495499 - AluY SINE Alu 0 311 38 189 0 0 0 chr13 17249986 17250007 -102494891 + (TTGG)n Simple_repeat Simple_repeat 4 24 0 1103 243 73 64 chr13 17250038 17250486 -102494412 - MLT1C LTR MaLR -5 462 3 1993 201 8 2 chr13 17250894 17251292 -102493606 + L1PA16 LINE L1 5764 6163 -3 264 178 68 27 chr13 17251298 17251371 -102493527 + L1ME4a LINE L1 5968 6043 -78 201 147 0 0 chr13 17253586 17253620 -102491278 + (CA)n Simple_repeat Simple_repeat 1 34 0 4842 95 28 0 chr13 17253897 17254398 -102490500 - L1PA13 LINE L1 -7 6156 5627 2581 107 0 27 chr13 17254398 17254772 -102490126 + THE1B LTR MaLR 1 364 0 4842 95 28 0 chr13 17254772 17254993 -102489905 - L1PA13 LINE L1 -536 5627 5414 2535 188 13 15 chr13 17255373 17256060 -102488838 - L1M4 LINE L1 -405 6277 5592 689 233 28 40 chr13 17256079 17256332 -102488566 - L1M4 LINE L1 -2191 4453 4204 5091 188 15 20 chr13 17256337 17257911 -102486987 - L1PA16 LINE L1 -5 6864 5302 * 9766 118 17 29 chr13 17257905 17259371 -102485527 + THE1B-int LTR MaLR 133 1580 0 2562 100 5 24 chr13 17259371 17259742 -102485156 + THE1B LTR MaLR 1 364 0 301 170 0 0 chr13 17259753 17259800 -102485098 + L1PA15-16 LINE L1 1112 1158 -5691 * 6378 226 19 8 chr13 17259795 17261221 -102483677 - L1PA16 LINE L1 -5592 1257 5 593 219 103 0 chr13 17261236 17261391 -102483507 - L1M4 LINE L1 -2448 4196 4026 4496 257 73 45 chr13 17261446 17264260 -102480638 - L1M4c LINE L1 -3653 2991 2 330 322 34 0 chr13 17265299 17265417 -102479481 + L2 LINE L2 3192 3313 0 249 331 24 24 chr13 17265614 17265738 -102479160 - MIR SINE MIR -110 152 29 377 314 138 57 chr13 17265870 17266348 -102478550 - MLT1F LTR MaLR -8 534 18 235 255 89 76 chr13 17266422 17266579 -102478319 + MIR SINE MIR 60 218 -44 827 319 88 0 chr13 17267341 17267661 -102477237 - L2 LINE L2 -1646 1668 1321 652 298 42 28 chr13 17267756 17268041 -102476857 + MLT1K LTR MaLR 300 588 0 364 274 61 17 chr13 17268142 17268271 -102476627 + MIR SINE MIR 37 170 -63 360 319 48 24 chr13 17268267 17268433 -102476465 - MIR SINE MIR -30 232 63 * 282 292 22 66 chr13 17268455 17268592 -102476306 - MER94 DNA DNA 0 134 4 1182 280 89 15 chr13 17268592 17268995 -102475903 - LTR16A LTR ERVL -1 449 17 2446 67 0 10 chr13 17269081 17269380 -102475518 - AluY SINE Alu -15 296 1 22 35 0 0 chr13 17269543 17269572 -102475326 + AT_rich Low_complexity Low_complexity 1 29 0 2540 185 55 6 chr13 17270188 17270680 -102474218 + MLT2B1 LTR ERVL 1 516 -4 261 0 0 0 chr13 17270840 17270869 -102474029 + (TCTA)n Simple_repeat Simple_repeat 4 32 0 3386 96 78 166 chr13 17271876 17272630 -102472268 - LTR12 LTR ERV1 0 688 1 668 226 38 47 chr13 17272844 17273079 -102471819 - pTR5 LTR ERV1 -1463 975 743 2286 75 0 40 chr13 17273128 17273449 -102471449 + AluY SINE Alu 1 308 -3 27 49 0 0 chr13 17274725 17274766 -102470132 + AT_rich Low_complexity Low_complexity 1 41 0 201 74 0 0 chr13 17275761 17275788 -102469110 + (T)n Simple_repeat Simple_repeat 1 27 0 249 228 20 129 chr13 17275827 17275928 -102468970 + MER77 LTR ERV1 1 90 -515 2636 182 96 35 chr13 17276741 17277407 -102467491 + MER39 LTR ERV1 1 707 0 367 333 57 13 chr13 17277641 17277800 -102467098 - L2 LINE L2 -329 2984 2819 484 218 0 7 chr13 17277937 17278125 -102466773 + MER58A DNA MER1_type 1 223 -1 1469 204 14 10 chr13 17278484 17278778 -102466120 - AluJb SINE Alu -17 295 1 33 43 0 0 chr13 17279418 17279465 -102465433 + AT_rich Low_complexity Low_complexity 1 47 0 279 54 0 0 chr13 17281661 17281698 -102463200 + (TG)n Simple_repeat Simple_repeat 2 38 0 3758 191 31 22 chr13 17282320 17283892 -102461006 + L1MB1 LINE L1 4545 6123 -45 24 77 0 0 chr13 17283947 17283999 -102460899 + AT_rich Low_complexity Low_complexity 1 52 0 2556 55 0 3 chr13 17284030 17284340 -102460558 - AluY SINE Alu -2 309 1 2825 7 0 0 chr13 17284652 17284960 -102459938 - AluYa5 SINE Alu -3 308 1 21 57 0 0 chr13 17285791 17285826 -102459072 + AT_rich Low_complexity Low_complexity 1 35 0 23 33 0 0 chr13 17286476 17286506 -102458392 + AT_rich Low_complexity Low_complexity 1 30 0 24 53 0 0 chr13 17286623 17286661 -102458237 + AT_rich Low_complexity Low_complexity 1 38 0 1935 143 89 8 chr13 17286759 17287131 -102457767 - MSTA LTR MaLR 0 428 27 2344 154 20 0 chr13 17287156 17287553 -102457345 - MSTA-int LTR MaLR 0 1651 1247 666 149 23 17 chr13 17287660 17287834 -102457064 + CT-rich Low_complexity Low_complexity 3 177 0 252 368 40 8 chr13 17287903 17288028 -102456870 - L2 LINE L2 -2 3270 3142 4794 235 61 30 chr13 17288385 17290422 -102454476 - L1M4 LINE L1 -1346 5502 3402 355 276 94 0 chr13 17290427 17290597 -102454301 - L1M4 LINE L1 -3488 3360 3175 2441 188 4 2 chr13 17290662 17291140 -102453758 - L1MA4 LINE L1 -202 6098 5620 586 227 7 13 chr13 17291281 17291435 -102453463 + L1M4 LINE L1 6 158 -6384 9027 189 37 29 chr13 17291472 17292244 -102452654 - L1MA4 LINE L1 -735 5565 4801 2134 97 18 4 chr13 17292244 17292553 -102452345 - AluSg SINE Alu 0 313 1 9027 189 37 29 chr13 17292553 17294329 -102450569 - L1MA4 LINE L1 -1499 4801 2999 579 244 96 10 chr13 17294296 17294599 -102450299 - L1M4 LINE L1 -3687 3161 2833 * 438 271 39 0 chr13 17294711 17294866 -102450032 - L1MB4 LINE L1 0 6180 6020 555 232 60 12 chr13 17294897 17295065 -102449833 - L1M4 LINE L1 -1281 4865 4690 2512 246 71 11 chr13 17295077 17295719 -102449179 - L1MB4 LINE L1 -180 6000 5398 2070 120 0 0 chr13 17295719 17296002 -102448896 - AluSq SINE Alu -28 285 3 2512 246 71 11 chr13 17296002 17296926 -102447972 - L1MB4 LINE L1 -782 5398 4358 1029 260 14 14 chr13 17296923 17297284 -102447614 - L1MB4 LINE L1 -2413 3733 3373 * 2049 115 0 4 chr13 17297859 17298137 -102446761 - AluSq SINE Alu -28 285 9 240 184 0 0 chr13 17298267 17298316 -102446582 + (CA)n Simple_repeat Simple_repeat 1 49 0 538 257 47 65 chr13 17298316 17298530 -102446368 - MIR SINE MIR -17 245 36 251 324 27 47 chr13 17298737 17298885 -102446013 + MIR SINE MIR 117 261 -1 224 228 0 0 chr13 17298896 17298953 -102445945 + (CAAA)n Simple_repeat Simple_repeat 2 58 0 275 195 78 0 chr13 17299036 17299113 -102445785 + L1ME4a LINE L1 6036 6118 -3 1612 210 10 16 chr13 17299155 17299469 -102445429 + AluJo SINE Alu 1 312 0 1962 143 103 137 chr13 17299511 17300104 -102444794 - LTR4 LTR ERV1 0 596 24 243 152 0 0 chr13 17301233 17301279 -102443619 + (TGAA)n Simple_repeat Simple_repeat 1 46 0 668 261 61 0 chr13 17301370 17301535 -102443363 + MIR SINE MIR 16 190 -72 448 194 98 86 chr13 17302036 17302214 -102442684 + MLT1D LTR MaLR 6 193 -289 1268 194 0 48 chr13 17302216 17302489 -102442409 + AluJb SINE Alu 5 264 -48 387 306 99 97 chr13 17302809 17303575 -102441323 - L1M4 LINE L1 -5573 1276 509 448 300 83 106 chr13 17304022 17304955 -102439943 - L1M2 LINE L1 -5456 1393 786 1314 221 47 53 chr13 17306432 17306967 -102437931 + MER67C LTR ERV1 22 514 0 25 65 0 0 chr13 17307244 17307290 -102437608 + AT_rich Low_complexity Low_complexity 1 46 0 253 327 47 0 chr13 17307412 17307519 -102437379 - MIR SINE MIR -71 191 80 372 248 0 19 chr13 17307666 17307771 -102437127 + L1M3e LINE L1 466 568 -6921 412 350 43 12 chr13 17307836 17308090 -102436808 + L1M3e LINE L1 1414 1675 -4890 3816 260 42 15 chr13 17308289 17308854 -102436044 + L1M3e LINE L1 2007 2555 -5010 2587 11 0 0 chr13 17308854 17309136 -102435762 + AluYb8 SINE Alu 33 314 -4 3816 260 42 15 chr13 17309136 17311344 -102433554 + L1M3e LINE L1 2555 4812 -2753 1220 178 4 35 chr13 17311344 17311608 -102433290 + AluJo SINE Alu 87 343 0 291 29 0 0 chr13 17311574 17311773 -102433125 + (GAA)n Simple_repeat Simple_repeat 1 199 0 * 234 128 0 0 chr13 17311767 17311806 -102433092 + (GGGA)n Simple_repeat Simple_repeat 3 41 0 * 4100 196 52 13 chr13 17311810 17312881 -102432017 + L1M3e LINE L1 4929 6041 -1524 7191 17 0 1 chr13 17312886 17313717 -102431181 + L1PA2 LINE L1 5326 6155 0 210 209 0 0 chr13 17315337 17315380 -102429518 - MIR SINE MIR -67 141 99 762 192 114 64 chr13 17316566 17316785 -102428113 + MER46A DNA MER2_type 7 236 0 1789 142 26 33 chr13 17316827 17317130 -102427768 + AluSx SINE Alu 3 303 -9 425 230 70 0 chr13 17318827 17318927 -102425971 + MER5A DNA MER1_type 2 108 -81 10460 43 5 37 chr13 17319121 17320640 -102424258 + SVA Other Other 1 1423 0 247 337 45 11 chr13 17323679 17323768 -102421130 - L2 LINE L2 -56 3216 3125 1571 209 6 3 chr13 17324128 17324444 -102420454 + L1MC2 LINE L1 6027 6343 -1 1920 284 60 40 chr13 17324610 17324713 -102420185 - L2 LINE L2 -784 2530 2430 538 276 74 0 chr13 17324713 17324876 -102420022 + MER96 DNA MER1_type 1 175 0 1920 284 60 40 chr13 17324876 17325543 -102419355 - L2 LINE L2 -884 2430 1745 217 140 35 18 chr13 17325543 17325600 -102419298 + GA-rich Low_complexity Low_complexity 2 59 0 28 48 0 0 chr13 17326284 17326326 -102418572 + AT_rich Low_complexity Low_complexity 1 42 0 207 0 0 0 chr13 17326447 17326470 -102418428 + (GGA)n Simple_repeat Simple_repeat 2 24 0 2239 125 0 0 chr13 17327905 17328200 -102416698 - AluSg SINE Alu -15 295 1 955 155 53 63 chr13 17328415 17328621 -102416277 + L1PA16 LINE L1 5963 6166 0 23 0 0 0 chr13 17329134 17329157 -102415741 + AT_rich Low_complexity Low_complexity 1 23 0 201 258 65 0 chr13 17329617 17329679 -102415219 - MIR3 SINE MIR -23 185 120 526 272 128 64 chr13 17330409 17330814 -102414084 + LTR33A LTR ERVL 1 431 -92 896 310 67 33 chr13 17331250 17331740 -102413158 + LTR33 LTR ERVL 3 509 -12 23 33 0 0 chr13 17333037 17333067 -102411831 + AT_rich Low_complexity Low_complexity 1 30 0 189 0 0 0 chr13 17333138 17333159 -102411739 + (TTTA)n Simple_repeat Simple_repeat 3 23 0 2169 106 0 0 chr13 17333159 17333452 -102411446 - L1PA7 LINE L1 -16 6138 5846 249 304 76 11 chr13 17333734 17333826 -102411072 + L2 LINE L2 3155 3252 -20 200 232 43 0 chr13 17333895 17333964 -102410934 + (CA)n Simple_repeat Simple_repeat 1 72 0 24 53 0 0 chr13 17334006 17334044 -102410854 + AT_rich Low_complexity Low_complexity 1 38 0 1042 225 91 71 chr13 17334319 17334357 -102410541 + MLT1C LTR MaLR 6 42 -425 1684 193 5 63 chr13 17334357 17334696 -102410202 - MLT1A1 LTR MaLR 0 365 49 2061 110 35 21 chr13 17334696 17334986 -102409912 + AluSx SINE Alu 1 294 -18 1684 193 5 63 chr13 17334986 17335029 -102409869 - MLT1A1 LTR MaLR -316 49 5 1042 225 91 71 chr13 17335029 17335443 -102409455 + MLT1C LTR MaLR 42 467 0 5224 230 52 48 chr13 17335618 17337124 -102407774 - MLT1A1-int LTR MaLR -113 1538 28 483 183 148 49 chr13 17337121 17337263 -102407635 + MST-int LTR MaLR 506 661 -990 * 842 231 82 12 chr13 17337306 17337561 -102407337 - MSTA LTR MaLR -61 367 95 920 189 189 20 chr13 17337576 17337820 -102407078 + THE1-int LTR MaLR 907 1191 -389 234 232 18 0 chr13 17337808 17337864 -102407034 - THE1-int LTR MaLR -613 967 911 * 496 179 21 0 chr13 17337958 17338053 -102406845 - MSTA LTR MaLR -331 97 1 1344 208 6 43 chr13 17338053 17338400 -102406498 - MSTA-int LTR MaLR 0 1651 1318 247 250 79 13 chr13 17338407 17338483 -102406415 - MSTA LTR MaLR -273 155 75 405 215 19 37 chr13 17338526 17338633 -102406265 - MSTA LTR MaLR -323 105 1 632 164 9 0 chr13 17338633 17338749 -102406149 - MSTA-int LTR MaLR 0 1651 1535 439 219 10 0 chr13 17338946 17339042 -102405856 - MSTA LTR MaLR -331 97 1 1371 217 6 43 chr13 17339044 17339389 -102405509 - MSTA-int LTR MaLR -2 1649 1318 362 215 0 0 chr13 17339396 17339461 -102405437 - MSTA LTR MaLR -269 159 95 349 253 10 0 chr13 17339564 17339663 -102405235 - MSTA LTR MaLR -328 100 1 5894 219 50 47 chr13 17339663 17341280 -102403618 - MSTA-int LTR MaLR 0 1651 30 357 262 21 41 chr13 17341281 17341426 -102403472 + THE1-int LTR MaLR 467 608 -972 882 239 78 8 chr13 17341463 17341718 -102403180 - MSTA LTR MaLR -61 367 95 915 189 189 20 chr13 17341733 17341977 -102402921 + THE1-int LTR MaLR 907 1191 -389 234 232 18 0 chr13 17341965 17342021 -102402877 - THE1-int LTR MaLR -613 967 911 * 517 168 21 0 chr13 17342115 17342210 -102402688 - MSTA LTR MaLR -331 97 1 1376 219 3 40 chr13 17342210 17342557 -102402341 - MSTA-int LTR MaLR 0 1651 1318 279 256 24 37 chr13 17342564 17342646 -102402252 - MSTA LTR MaLR -273 155 75 431 235 20 0 chr13 17342698 17342796 -102402102 - MSTA LTR MaLR -328 100 1 5749 224 55 39 chr13 17342796 17344388 -102400510 - MSTA-int LTR MaLR 0 1651 34 268 294 37 9 chr13 17344392 17344501 -102400397 + THE1-int LTR MaLR 466 577 -1003 1018 229 67 7 chr13 17344543 17344827 -102400071 - MSTA LTR MaLR -52 376 76 747 179 191 56 chr13 17344831 17345082 -102399816 + THE1-int LTR MaLR 907 1191 -389 315 179 18 0 chr13 17345070 17345126 -102399772 - THE1-int LTR MaLR -613 967 911 * 3919 93 27 4 chr13 17345197 17345747 -102399151 + LTR6A LTR ERV1 1 563 -1 417 200 21 0 chr13 17345778 17345873 -102399025 - MSTA LTR MaLR -331 97 1 1283 203 46 40 chr13 17345873 17346198 -102398700 - MSTA-int LTR MaLR 0 1651 1325 316 256 51 13 chr13 17346198 17346276 -102398622 - MSTA LTR MaLR -252 176 96 394 224 20 10 chr13 17346349 17346447 -102398451 - MSTA LTR MaLR -329 99 1 386 244 17 0 chr13 17346447 17346562 -102398336 - MSTA-int LTR MaLR 0 1651 1535 * 4640 243 68 25 chr13 17346558 17347860 -102397038 - MSTA-int LTR MaLR -262 1389 32 474 207 164 14 chr13 17347862 17348002 -102396896 + MST-int LTR MaLR 507 667 -984 951 247 52 11 chr13 17348030 17348301 -102396597 - MSTA LTR MaLR -52 376 95 668 228 197 30 chr13 17348319 17348552 -102396346 + THE1-int LTR MaLR 907 1178 -402 263 226 19 0 chr13 17348550 17348603 -102396295 - THE1-int LTR MaLR -613 967 914 * 320 194 29 2 chr13 17348709 17348783 -102396115 - MSTA LTR MaLR -356 76 3 1235 228 33 42 chr13 17348785 17349119 -102395779 - MSTA-int LTR MaLR 0 1651 1321 492 196 21 0 chr13 17349265 17349362 -102395536 - MSTA LTR MaLR -329 99 1 4283 238 77 21 chr13 17349362 17350523 -102394375 - MSTA-int LTR MaLR 0 1651 427 749 234 8 10 chr13 17350521 17350725 -102394173 - MSTA-int LTR MaLR -1269 102 28 * 436 167 213 9 chr13 17350721 17350829 -102394069 + MST-int LTR MaLR 507 636 -1015 * 993 196 72 51 chr13 17350871 17351147 -102393751 - MSTA LTR MaLR -52 376 95 861 191 191 21 chr13 17351156 17351391 -102393507 + THE1-int LTR MaLR 904 1178 -402 258 231 19 0 chr13 17351393 17351445 -102393453 - THE1-int LTR MaLR -617 963 911 3628 113 29 4 chr13 17351516 17352065 -102392833 + LTR6A LTR ERV1 1 563 -1 438 200 21 0 chr13 17352095 17352190 -102392708 - MSTA LTR MaLR -331 97 1 1183 215 39 48 chr13 17352190 17352520 -102392378 - MSTA-int LTR MaLR 0 1651 1325 300 248 124 9 chr13 17352520 17352625 -102392273 - MSTA LTR MaLR -252 176 60 422 247 21 0 chr13 17352674 17352771 -102392127 - MSTA LTR MaLR -329 99 1 6055 229 65 19 chr13 17352771 17354321 -102390577 - MSTA-int LTR MaLR 0 1651 28 591 180 156 10 chr13 17354317 17354468 -102390430 + MST-int LTR MaLR 466 661 -963 * 919 227 81 42 chr13 17354476 17354784 -102390114 - MSTA LTR MaLR -43 385 66 725 229 196 21 chr13 17354788 17355028 -102389870 + THE1-int LTR MaLR 907 1188 -392 239 173 19 39 chr13 17355019 17355071 -102389827 - THE1-int LTR MaLR -613 967 917 * 373 226 11 0 chr13 17355177 17355270 -102389628 - MSTA LTR MaLR -334 94 1 1203 217 16 38 chr13 17355270 17355588 -102389310 - MSTA-int LTR MaLR 0 1651 1341 269 255 138 11 chr13 17355595 17355689 -102389209 - MSTA LTR MaLR -258 170 65 488 198 10 0 chr13 17355741 17355837 -102389061 - MSTA LTR MaLR -331 97 1 633 143 18 0 chr13 17355837 17355949 -102388949 - MSTA-int LTR MaLR 0 1651 1538 1024 244 48 5 chr13 17355983 17356258 -102388640 + MST-int LTR MaLR 829 1191 -544 29 28 0 0 chr13 17356577 17356613 -102388285 + AT_rich Low_complexity Low_complexity 1 36 0 2615 139 59 12 chr13 17357396 17357885 -102387013 - L1MB2 LINE L1 -2 6169 5658 1674 205 0 3 chr13 17358057 17358359 -102386539 + AluJo SINE Alu 1 301 -11 1076 94 6 17 chr13 17358372 17358552 -102386346 + (GAAA)n Simple_repeat Simple_repeat 1 178 0 1395 176 45 84 chr13 17358863 17359222 -102385676 - MLT1A1 LTR MaLR 0 365 21 2444 87 10 0 chr13 17359460 17359770 -102385128 - AluSp SINE Alu 0 313 1 2207 110 7 0 chr13 17360008 17360298 -102384600 - AluSq SINE Alu -21 292 1 393 275 18 57 chr13 17360429 17360645 -102384253 - MIR SINE MIR -53 209 1 280 248 40 50 chr13 17360904 17361005 -102383893 + MLT2E LTR ERVL 32 131 -497 770 216 55 31 chr13 17361372 17361626 -102383272 - LTR37B LTR ERV1 0 468 209 363 294 59 26 chr13 17361728 17361942 -102382956 - MIR SINE MIR -26 236 22 1575 88 0 0 chr13 17362190 17362405 -102382493 - L1PA6 LINE L1 0 6154 5940 576 222 33 39 chr13 17362842 17362951 -102381947 + MIR SINE MIR 14 123 -139 4371 117 32 32 chr13 17362951 17363642 -102381256 - LTR8 LTR ERV1 0 691 1 576 222 33 39 chr13 17363642 17363685 -102381213 + MIR SINE MIR 123 165 -97 253 319 0 0 chr13 17366120 17366192 -102378706 + MIR SINE MIR 139 210 -52 1945 193 11 6 chr13 17367184 17367547 -102377351 - MLT1A1 LTR MaLR 0 365 1 874 127 51 23 chr13 17370365 17370673 -102374225 + LTR7 LTR ERV1 1 450 0 1427 209 57 29 chr13 17371355 17371705 -102373193 + MER45B DNA AcHobo 445 804 -236 214 283 88 0 chr13 17371732 17371845 -102373053 + MIR SINE MIR 77 199 -63 363 203 0 0 chr13 17372995 17373064 -102371834 - L2 LINE L2 -3 3310 3242 297 352 31 0 chr13 17373168 17373296 -102371602 - MIR3 SINE MIR -42 166 35 459 35 0 0 chr13 17373703 17373760 -102371138 + (TC)n Simple_repeat Simple_repeat 2 58 0 492 299 56 20 chr13 17374777 17374974 -102369924 - MIR SINE MIR -12 250 47 296 294 76 5 chr13 17375301 17375499 -102369399 + MIR SINE MIR 13 228 -34 25 0 0 0 chr13 17376021 17376046 -102368852 + AT_rich Low_complexity Low_complexity 1 25 0 2503 55 0 0 chr13 17376038 17376327 -102368571 - AluY SINE Alu -22 289 1 1558 57 16 0 chr13 17376391 17376585 -102368313 - BC200 scRNA scRNA -3 197 1 461 292 134 50 chr13 17376768 17376970 -102367928 + MLT1K LTR MaLR 44 262 -326 342 80 0 0 chr13 17376993 17377043 -102367855 + (GA)n Simple_repeat Simple_repeat 1 50 0 480 18 0 0 chr13 17377043 17377100 -102367798 + (TG)n Simple_repeat Simple_repeat 1 57 0 325 216 118 10 chr13 17377889 17377991 -102366907 + HsTC2c DNA Tc2 615 727 -2 25 0 0 0 chr13 17378249 17378274 -102366624 + AT_rich Low_complexity Low_complexity 1 25 0 338 341 28 23 chr13 17379274 17379450 -102365448 + MIR3 SINE MIR 16 192 -16 777 200 36 12 chr13 17379470 17379635 -102365263 - MER45A DNA AcHobo 0 178 10 313 317 32 16 chr13 17380570 17380693 -102364205 + MIR SINE MIR 19 143 -65 2222 121 0 3 chr13 17380776 17381081 -102363817 + AluSx SINE Alu 2 305 -7 1973 119 31 10 chr13 17381111 17381405 -102363493 - AluSq SINE Alu -13 300 1 571 257 14 0 chr13 17384192 17384340 -102360558 + MIR SINE MIR 113 262 0 486 343 94 4 chr13 17384446 17384552 -102360346 + MIR SINE MIR 1 96 -166 7315 69 51 1 chr13 17384552 17385475 -102359423 + LTR5 LTR ERVK 1 969 0 486 343 94 4 chr13 17385475 17385601 -102359297 + MIR SINE MIR 96 254 -8 7602 27 1 0 chr13 17387074 17387957 -102356941 - L1PA3 LINE L1 0 6155 5272 2228 98 0 7 chr13 17390599 17390895 -102354003 - AluSg1 SINE Alu -15 294 1 288 137 0 0 chr13 17391016 17391067 -102353831 + (TG)n Simple_repeat Simple_repeat 1 51 0 37 39 0 0 chr13 17392202 17392253 -102352645 + AT_rich Low_complexity Low_complexity 1 51 0 23 78 0 0 chr13 17392822 17392873 -102352025 + AT_rich Low_complexity Low_complexity 1 51 0 1325 209 11 28 chr13 17394212 17394499 -102350399 - AluJo SINE Alu -30 282 1 1364 168 59 43 chr13 17395253 17395554 -102349344 - MSTB LTR MaLR -4 422 117 1027 156 156 0 chr13 17395554 17395656 -102349242 - MER30 DNA MER1_type 0 230 145 480 35 0 0 chr13 17395656 17395714 -102349184 + (TG)n Simple_repeat Simple_repeat 2 59 0 1027 156 156 0 chr13 17395714 17395810 -102349088 - MER30 DNA MER1_type -85 145 1 773 136 16 16 chr13 17395810 17395934 -102348964 - MSTB LTR MaLR -302 124 1 1544 275 37 5 chr13 17396579 17396986 -102347912 + MER70A LTR ERVL 4 423 -49 3288 132 20 2 chr13 17397738 17398246 -102346652 + L1PB1 LINE L1 5631 6147 -4 24 53 0 0 chr13 17399938 17399976 -102344922 + AT_rich Low_complexity Low_complexity 1 38 0 1273 191 52 42 chr13 17399976 17400264 -102344634 - AluJo SINE Alu -11 291 1 21 89 0 0 chr13 17400658 17400714 -102344184 + AT_rich Low_complexity Low_complexity 1 56 0 211 309 0 24 chr13 17401109 17401193 -102343705 - MIR SINE MIR -20 242 161 255 79 0 0 chr13 17401206 17401244 -102343654 + (CA)n Simple_repeat Simple_repeat 1 38 0 509 153 276 0 chr13 17401311 17401409 -102343489 + FLAM_C SINE Alu 2 126 -17 675 283 57 69 chr13 17401653 17402090 -102342808 - MLT1K LTR MaLR -2 586 76 262 280 150 0 chr13 17402498 17402598 -102342300 + MIR SINE MIR 36 150 -58 1537 194 182 5 chr13 17402606 17402997 -102341901 - LTR46 LTR ERV1 0 460 1 311 330 112 8 chr13 17403039 17403306 -102341592 - L2 LINE L2 -24 3289 2995 478 230 143 14 chr13 17404182 17404399 -102340499 + LTR33 LTR ERVL 277 521 0 384 330 133 0 chr13 17404688 17404906 -102339992 + MIR SINE MIR 15 261 -1 333 345 7 0 chr13 17405050 17405189 -102339709 + MIR SINE MIR 23 162 -100 1081 264 25 6 chr13 17405291 17405613 -102339285 - LTR16C LTR ERVL -29 462 135 214 260 104 21 chr13 17406004 17406100 -102338798 - MIR SINE MIR -60 148 45 598 164 0 4 chr13 17410286 17410454 -102334444 + HSAT5 Satellite Satellite 1 167 -3 305 182 34 57 chr13 17410674 17410762 -102334136 + HSAT5 Satellite Satellite 1 86 0 334 218 12 6 chr13 17410993 17411099 -102333799 + HSAT5 Satellite Satellite 1 106 -7 * 472 272 26 9 chr13 17411083 17411235 -102333663 - MSTA LTR MaLR -141 285 133 738 242 189 20 chr13 17411282 17411526 -102333372 + THE1-int LTR MaLR 907 1191 -389 270 184 21 0 chr13 17411514 17411570 -102333328 - THE1-int LTR MaLR -613 967 921 * 359 178 89 40 chr13 17411635 17411736 -102333162 - MSTA LTR MaLR -322 106 1 1113 221 92 20 chr13 17411736 17412039 -102332859 - MSTA-int LTR MaLR 0 1651 1327 377 204 126 10 chr13 17412047 17412150 -102332748 - MSTA LTR MaLR -257 171 57 457 204 20 10 chr13 17412195 17412293 -102332605 - MSTA LTR MaLR -329 99 1 6063 222 52 41 chr13 17412293 17413899 -102330999 - MSTA-int LTR MaLR 0 1651 28 387 214 150 36 chr13 17413896 17414036 -102330862 + MST-int LTR MaLR 506 661 -990 * 926 197 70 13 chr13 17414078 17414306 -102330592 - MSTA LTR MaLR -60 368 128 918 193 189 20 chr13 17414347 17414591 -102330307 + THE1-int LTR MaLR 907 1191 -389 257 214 18 0 chr13 17414579 17414635 -102330263 - THE1-int LTR MaLR -613 967 911 * 476 189 21 0 chr13 17414729 17414824 -102330074 - MSTA LTR MaLR -331 97 1 1423 204 3 43 chr13 17414824 17415172 -102329726 - MSTA-int LTR MaLR 0 1651 1318 309 226 32 0 chr13 17415179 17415241 -102329657 - MSTA LTR MaLR -269 159 96 469 214 20 0 chr13 17415317 17415415 -102329483 - MSTA LTR MaLR -328 100 1 5999 221 53 38 chr13 17415415 17417009 -102327889 - MSTA-int LTR MaLR 0 1651 34 317 266 37 9 chr13 17417013 17417122 -102327776 + THE1-int LTR MaLR 466 577 -1003 969 212 66 36 chr13 17417164 17417438 -102327460 - MSTA LTR MaLR -52 376 95 749 187 191 56 chr13 17417450 17417701 -102327197 + THE1-int LTR MaLR 907 1191 -389 315 179 18 0 chr13 17417689 17417745 -102327153 - THE1-int LTR MaLR -613 967 911 * 3764 106 29 4 chr13 17417866 17418414 -102326484 + LTR6A LTR ERV1 1 562 -2 477 157 28 46 chr13 17418433 17418541 -102326357 - MSTA LTR MaLR -322 106 1 1327 203 43 37 chr13 17418541 17418866 -102326032 - MSTA-int LTR MaLR 0 1651 1325 272 226 88 88 chr13 17418866 17418968 -102325930 - MSTA LTR MaLR -252 176 75 421 214 20 10 chr13 17419022 17419120 -102325778 - MSTA LTR MaLR -329 99 1 475 209 9 0 chr13 17419120 17419230 -102325668 - MSTA-int LTR MaLR 0 1651 1541 4892 236 67 25 chr13 17419233 17420541 -102324357 - MSTA-int LTR MaLR -263 1388 26 458 227 167 8 chr13 17420537 17420669 -102324229 + MST-int LTR MaLR 507 659 -992 * 1023 236 67 7 chr13 17420705 17420989 -102323909 - MSTA LTR MaLR -52 376 76 648 223 197 30 chr13 17420993 17421226 -102323672 + THE1-int LTR MaLR 907 1178 -402 269 228 18 0 chr13 17421224 17421281 -102323617 - THE1-int LTR MaLR -613 967 910 * 249 57 0 0 chr13 17421396 17421431 -102323467 + (CA)n Simple_repeat Simple_repeat 2 36 0 509 153 276 0 chr13 17421498 17421596 -102323302 + FLAM_C SINE Alu 2 126 -17 320 199 39 20 chr13 17421664 17421765 -102323133 - MSTA LTR MaLR -323 103 3 1209 219 40 43 chr13 17421767 17422095 -102322803 - MSTA-int LTR MaLR 0 1651 1325 237 263 50 25 chr13 17422095 17422175 -102322723 - MSTA LTR MaLR -252 176 95 497 214 19 0 chr13 17422243 17422346 -102322552 - MSTA LTR MaLR -323 105 1 4516 228 75 26 chr13 17422346 17423514 -102321384 - MSTA-int LTR MaLR 0 1651 427 742 235 8 10 chr13 17423512 17423716 -102321182 - MSTA-int LTR MaLR -1270 101 28 * 561 181 173 8 chr13 17423712 17423845 -102321053 + MST-int LTR MaLR 507 661 -990 * 893 248 52 42 chr13 17423871 17424178 -102320720 - MSTA LTR MaLR -43 385 76 408 239 11 0 chr13 17424182 17424270 -102320628 + THE1-int LTR MaLR 907 995 -585 2059 125 3 11 chr13 17424477 17424788 -102320110 - AluSp SINE Alu 0 309 1 22 0 0 0 chr13 17425126 17425148 -102319750 + AT_rich Low_complexity Low_complexity 1 22 0 1256 43 0 19 chr13 17425148 17425310 -102319588 - L1PA4 LINE L1 -1 6154 5996 965 136 82 0 chr13 17425339 17425486 -102319412 - AluSq SINE Alu -143 170 12 2149 118 10 0 chr13 17425511 17425816 -102319082 - AluY SINE Alu -3 308 1 333 281 52 37 chr13 17425817 17425952 -102318946 - L1M4 LINE L1 -3540 2842 2706 314 318 9 0 chr13 17426109 17426216 -102318682 - L1M4 LINE L1 -3773 2609 2502 579 292 163 29 chr13 17426227 17427259 -102317639 - L1M4 LINE L1 -3894 2490 1311 1212 239 21 7 chr13 17427259 17427543 -102317355 - AluJo SINE Alu -24 288 1 579 292 163 29 chr13 17427543 17427571 -102317327 - L1M4 LINE L1 -5073 1311 1288 336 316 143 24 chr13 17427573 17427909 -102316989 - L1M4 LINE L1 -4862 1451 1076 829 168 37 11 chr13 17432218 17432409 -102312489 - L1MA3 LINE L1 0 6305 6110 1934 159 0 7 chr13 17433043 17433352 -102311546 - AluSg SINE Alu -3 307 1 2054 136 0 0 chr13 17434041 17434328 -102310570 + AluSc SINE Alu 7 293 -16 548 218 173 4 chr13 17435072 17435297 -102309601 - L1MA8 LINE L1 -4 6287 6025 4062 231 80 30 chr13 17435308 17437050 -102307848 - L1MA8 LINE L1 -359 5941 4081 2121 107 3 0 chr13 17437050 17437340 -102307558 + AluY SINE Alu 1 291 -20 4062 231 80 30 chr13 17437340 17437535 -102307363 - L1MA8 LINE L1 -2219 4081 3897 5205 275 48 15 chr13 17437546 17438999 -102305899 + L1 LINE L1 3310 4842 -1304 270 0 0 0 chr13 17438999 17439029 -102305869 + (CA)n Simple_repeat Simple_repeat 2 31 0 5205 275 48 15 chr13 17439029 17439485 -102305413 + L1 LINE L1 4842 5282 -864 3733 202 35 18 chr13 17439488 17440310 -102304588 + L1PA16 LINE L1 5317 6152 -14 628 207 17 0 chr13 17440519 17440635 -102304263 - MER30 DNA MER1_type 0 230 113 646 198 17 0 chr13 17440653 17440769 -102304129 - MER30 DNA MER1_type 0 230 113 663 190 17 0 chr13 17440787 17440903 -102303995 - MER30 DNA MER1_type 0 230 113 663 190 17 0 chr13 17440921 17441037 -102303861 - MER30 DNA MER1_type 0 230 113 633 207 17 0 chr13 17441055 17441171 -102303727 - MER30 DNA MER1_type 0 230 113 646 198 17 0 chr13 17441189 17441305 -102303593 - MER30 DNA MER1_type 0 230 113 1000 160 150 0 chr13 17441323 17441523 -102303375 - MER30 DNA MER1_type 0 230 1 24 67 0 0 chr13 17442170 17442215 -102302683 + AT_rich Low_complexity Low_complexity 1 45 0 1189 105 6 0 chr13 17442535 17442697 -102302201 - AluSx SINE Alu -137 175 13 2284 81 0 3 chr13 17444035 17444333 -102300565 + AluY SINE Alu 1 297 -14 21 36 0 0 chr13 17444536 17444564 -102300334 + AT_rich Low_complexity Low_complexity 1 28 0 21 0 0 0 chr13 17444704 17444725 -102300173 + AT_rich Low_complexity Low_complexity 1 21 0 3441 40 0 5 chr13 17444840 17445269 -102299629 - L1P LINE L1 -942 5204 4778 2805 21 0 0 chr13 17445269 17445596 -102299302 + L1PA2 LINE L1 5829 6155 0 2045 122 0 3 chr13 17445940 17446227 -102298671 - AluSx SINE Alu -22 290 5 21 71 0 0 chr13 17446333 17446375 -102298523 + AT_rich Low_complexity Low_complexity 1 42 0 7816 93 4 1 chr13 17446431 17447495 -102297403 + MER11C LTR ERVK 1 1067 -4 1950 134 3 10 chr13 17448062 17448361 -102296537 - AluSq SINE Alu -16 297 1 310 173 0 0 chr13 17448473 17448525 -102296373 - MER51D LTR ERV1 -106 551 500 6439 155 20 10 chr13 17449604 17450750 -102294148 - THE1C-int LTR MaLR -158 1422 215 359 215 0 0 chr13 17450750 17450815 -102294083 - THE1C-int LTR MaLR -1515 65 1 1706 151 48 43 chr13 17450815 17451187 -102293711 - THE1C LTR MaLR 0 375 2 2129 103 0 28 chr13 17451697 17452017 -102292881 - AluY SINE Alu 0 311 1 796 244 72 9 chr13 17452881 17453102 -102291796 + MER46A DNA MER2_type 1 235 -1 548 252 47 65 chr13 17453215 17453429 -102291469 + MIR SINE MIR 36 245 -17 240 184 0 0 chr13 17453429 17453478 -102291420 + (TG)n Simple_repeat Simple_repeat 1 49 0 21 0 0 0 chr13 17453490 17453511 -102291387 + AT_rich Low_complexity Low_complexity 1 21 0 1601 189 0 3 chr13 17453602 17453888 -102291010 + AluSq SINE Alu 1 285 -28 643 268 54 20 chr13 17454450 17454804 -102290094 + L1 LINE L1 3360 3725 -2421 475 277 19 19 chr13 17455225 17455438 -102289460 + L1M4 LINE L1 3275 3487 -2659 1530 173 74 28 chr13 17455513 17455865 -102289033 + THE1C LTR MaLR 5 372 -3 9655 119 31 44 chr13 17455868 17457454 -102287444 + THE1C-int LTR MaLR 1 1566 -14 6079 218 25 6 chr13 17457554 17459019 -102285879 - L1 LINE L1 -2249 3897 2405 1313 77 0 0 chr13 17459019 17459189 -102285709 - AluY SINE Alu -6 305 136 634 115 19 19 chr13 17459189 17459293 -102285605 + LTR1B LTR ERV1 723 826 0 478 190 111 0 chr13 17459293 17459416 -102285482 + MER67B LTR ERV1 60 156 -358 3792 154 82 11 chr13 17459415 17460109 -102284789 - LTR1B LTR ERV1 -83 743 1 301 263 110 25 chr13 17460109 17460227 -102284671 - MER67B LTR ERV1 -502 159 32 1928 129 16 19 chr13 17460635 17460946 -102283952 - AluY SINE Alu -1 310 1 1890 161 0 0 chr13 17461301 17461600 -102283298 + AluSx SINE Alu 1 299 -13 548 331 60 40 chr13 17463679 17464078 -102280820 - LTR33 LTR ERVL -114 407 1 2035 177 36 28 chr13 17464298 17464843 -102280055 + MLT2A2 LTR ERVL 1 551 -3 997 278 163 33 chr13 17464846 17465763 -102279135 - HAL1b LINE L1 -105 1243 208 2277 38 0 0 chr13 17465896 17466159 -102278739 + AluY SINE Alu 1 263 -48 230 0 33 0 chr13 17466173 17466203 -102278695 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 233 337 127 17 chr13 17466396 17466577 -102278321 + L3 LINE CR1 327 527 -1050 30 0 0 0 chr13 17466584 17466614 -102278284 + AT_rich Low_complexity Low_complexity 1 30 0 606 370 129 23 chr13 17466822 17467594 -102277304 + L3 LINE CR1 623 1476 -101 410 319 145 0 chr13 17467733 17467899 -102276999 + MIR SINE MIR 39 228 -34 317 146 0 36 chr13 17468353 17468408 -102276490 + MER39 LTR ERV1 655 707 0 203 169 0 85 chr13 17468589 17468648 -102276250 + CT-rich Low_complexity Low_complexity 1 54 0 321 307 144 23 chr13 17468701 17468916 -102275982 - HAL1 LINE L1 0 2507 2267 238 312 8 56 chr13 17468964 17469089 -102275809 + L2 LINE L2 3195 3313 0 774 230 8 60 chr13 17469141 17469376 -102275522 - HAL1 LINE L1 -754 1753 1531 867 309 77 14 chr13 17469377 17469949 -102274949 - HAL1 LINE L1 -868 1639 1032 402 269 123 15 chr13 17469935 17470203 -102274695 - HAL1 LINE L1 -1240 1267 971 * 2054 103 0 7 chr13 17471206 17471508 -102273390 + AluY SINE Alu 1 300 0 1146 254 38 130 chr13 17471556 17472110 -102272788 + MLT1E2 LTR MaLR 1 503 -2 2000 128 0 0 chr13 17472116 17472537 -102272361 + AluSq SINE Alu 3 423 0 321 26 0 0 chr13 17474034 17474072 -102270826 + (TG)n Simple_repeat Simple_repeat 1 38 0 33 80 0 0 chr13 17475520 17475595 -102269303 + AT_rich Low_complexity Low_complexity 1 75 0 1890 121 7 11 chr13 17476684 17476965 -102267933 - AluSx SINE Alu -32 280 1 851 125 0 0 chr13 17476990 17477118 -102267780 - AluSg/x SINE Alu -5 305 178 23 0 0 0 chr13 17477552 17477575 -102267323 + AT_rich Low_complexity Low_complexity 1 23 0 2192 108 15 6 chr13 17477575 17477917 -102266981 - L1PB1 LINE L1 -3 6148 5804 2515 219 48 76 chr13 17477979 17478769 -102266129 - L1MB1 LINE L1 0 6168 5401 1767 232 37 34 chr13 17478771 17479120 -102265778 + L1M4 LINE L1 4803 5149 -997 1817 118 17 37 chr13 17479120 17479416 -102265482 - AluSc SINE Alu -14 295 6 2168 128 0 10 chr13 17479421 17479734 -102265164 - AluSx SINE Alu -2 310 1 1767 232 37 34 chr13 17479734 17479946 -102264952 + L1M4 LINE L1 5152 5372 -774 861 248 30 52 chr13 17479947 17480263 -102264635 - L1MEc LINE L1 -3649 3292 3028 2517 52 0 0 chr13 17480263 17480569 -102264329 - AluY SINE Alu -5 306 1 861 248 30 52 chr13 17480569 17480734 -102264164 - L1MEc LINE L1 -3913 3028 2861 1876 285 92 69 chr13 17480735 17481883 -102263015 - L1MEc LINE L1 -5231 1192 19 2401 60 0 3 chr13 17482281 17482581 -102262317 + AluY SINE Alu 2 300 -11 2249 195 45 10 chr13 17482653 17483145 -102261753 - LTR22 LTR ERVK 0 509 1 221 209 136 64 chr13 17483604 17483714 -102261184 - MIR SINE MIR -56 206 89 223 269 166 28 chr13 17484640 17484785 -102260113 + MIR SINE MIR 51 215 -47 2388 75 0 0 chr13 17484967 17485261 -102259637 - AluY SINE Alu -17 294 1 191 258 75 118 chr13 17485356 17485449 -102259449 - L3 LINE CR1 -50 1527 1439 3430 72 13 4 chr13 17485901 17486374 -102258524 + MER11A LTR ERVK 790 1266 0 7131 191 6 39 chr13 17486376 17487000 -102257898 - L1P LINE L1 -1226 4920 4277 1684 191 3 0 chr13 17487000 17487293 -102257605 - AluJb SINE Alu -18 294 1 7131 191 6 39 chr13 17487293 17487776 -102257122 - L1P LINE L1 -1869 4277 3876 2049 130 3 3 chr13 17487776 17488083 -102256815 - AluSc SINE Alu -2 307 1 7131 191 6 39 chr13 17488083 17488537 -102256361 - L1P LINE L1 -2270 3876 3409 513 301 57 66 chr13 17488559 17488894 -102256004 - MLT1H1 LTR MaLR -204 351 20 2411 74 0 0 chr13 17488895 17489191 -102255707 - AluY SINE Alu -15 296 1 289 219 112 17 chr13 17489198 17489376 -102255522 + L1ME LINE L1 5677 5866 -312 4199 184 11 25 chr13 17489407 17490219 -102254679 - L1MA8 LINE L1 -172 6119 5322 1932 149 10 0 chr13 17490219 17490515 -102254383 - AluSq SINE Alu -14 299 1 4199 184 11 25 chr13 17490515 17490722 -102254176 - L1MA8 LINE L1 -969 5322 5114 21 89 0 0 chr13 17491265 17491321 -102253577 + AT_rich Low_complexity Low_complexity 1 56 0 336 48 0 0 chr13 17491803 17491845 -102253053 + (CA)n Simple_repeat Simple_repeat 1 42 0 207 139 0 0 chr13 17492441 17492477 -102252421 + (TTG)n Simple_repeat Simple_repeat 2 37 0 1823 196 52 28 chr13 17492598 17492985 -102251913 - MSTD LTR MaLR 0 396 1 327 258 0 86 chr13 17493102 17493230 -102251668 + MER5B DNA MER1_type 19 135 -43 286 325 94 49 chr13 17493495 17493698 -102251200 - MIR SINE MIR -3 259 48 2343 57 0 0 chr13 17494815 17495143 -102249755 + AluY SINE Alu 1 328 0 240 35 0 0 chr13 17495953 17495982 -102248916 + (CA)n Simple_repeat Simple_repeat 2 30 0 1724 106 4 0 chr13 17496526 17496762 -102248136 - AluSx SINE Alu -16 296 60 3183 69 7 0 chr13 17496762 17497196 -102247702 - L1PA8 LINE L1 -2 6170 5734 1726 129 7 41 chr13 17497584 17497878 -102247020 - AluSx SINE Alu -18 294 11 26 30 0 0 chr13 17498079 17498112 -102246786 + AT_rich Low_complexity Low_complexity 1 33 0 27 49 0 0 chr13 17499099 17499140 -102245758 + AT_rich Low_complexity Low_complexity 1 41 0 2175 114 3 0 chr13 17499262 17499559 -102245339 + AluSq SINE Alu 1 298 -15 617 316 43 8 chr13 17499772 17500028 -102244870 - LTR16A1 LTR ERVL -20 437 173 21 0 0 0 chr13 17500778 17500799 -102244099 + AT_rich Low_complexity Low_complexity 1 21 0 273 242 0 0 chr13 17500817 17500879 -102244019 - MIR SINE MIR -14 248 187 2123 130 0 0 chr13 17501831 17502124 -102242774 + AluSx SINE Alu 1 293 -19 22 0 0 0 chr13 17502129 17502151 -102242747 + AT_rich Low_complexity Low_complexity 1 22 0 26 30 0 0 chr13 17502186 17502219 -102242679 + AT_rich Low_complexity Low_complexity 1 33 0 216 67 0 0 chr13 17503234 17503264 -102241634 + (CA)n Simple_repeat Simple_repeat 1 30 0 628 294 43 7 chr13 17504095 17504371 -102240527 + L1ME4a LINE L1 5566 5851 -270 27 49 0 0 chr13 17504573 17504614 -102240284 + AT_rich Low_complexity Low_complexity 1 41 0 47 73 0 0 chr13 17505105 17505201 -102239697 + AT_rich Low_complexity Low_complexity 1 96 0 282 29 0 0 chr13 17505319 17505354 -102239544 + (GA)n Simple_repeat Simple_repeat 1 35 0 23 0 0 0 chr13 17505806 17505829 -102239069 + AT_rich Low_complexity Low_complexity 1 23 0 225 259 0 0 chr13 17506025 17506083 -102238815 + L1MC4 LINE L1 6659 6716 -1326 1172 85 0 0 chr13 17506199 17506352 -102238546 + AluSp SINE Alu 130 282 -31 180 0 0 0 chr13 17506359 17506379 -102238519 + (TTAA)n Simple_repeat Simple_repeat 4 23 0 2093 98 35 0 chr13 17506390 17506676 -102238222 - AluSp SINE Alu -17 296 1 875 255 90 17 chr13 17506688 17507045 -102237853 + Charlie2 DNA MER1_type 2439 2821 -41 434 335 79 32 chr13 17507513 17507955 -102236943 - L2 LINE L2 -624 2690 2228 5135 159 42 29 chr13 17509340 17511035 -102233863 + L1MA5 LINE L1 4553 6271 -29 9045 117 5 1 chr13 17511035 17512317 -102232581 - HSMAR1 DNA Mariner 0 1287 1 5135 159 42 29 chr13 17512317 17512346 -102232552 + L1MA5 LINE L1 6271 6298 -2 1049 201 34 8 chr13 17512836 17513075 -102231823 - Zaphod DNA AcHobo -8 4023 3779 219 276 102 31 chr13 17514444 17514571 -102230327 - L2 LINE L2 -1 3271 3136 36 0 0 0 chr13 17514805 17514841 -102230057 + AT_rich Low_complexity Low_complexity 1 36 0 687 266 6 0 chr13 17516605 17516778 -102228120 - FRAM SINE Alu -5 171 1 985 254 28 43 chr13 17517011 17517508 -102227390 + MLT1H1 LTR MaLR 1 595 0 186 43 0 0 chr13 17517662 17517685 -102227213 + (TC)n Simple_repeat Simple_repeat 2 24 0 225 198 66 66 chr13 17517686 17517777 -102227121 - LTR66 LTR ERVL -176 434 344 219 139 0 0 chr13 17518144 17518180 -102226718 + (CA)n Simple_repeat Simple_repeat 2 37 0 31 44 0 0 chr13 17518746 17518791 -102226107 + AT_rich Low_complexity Low_complexity 1 45 0 26 88 0 0 chr13 17519330 17519398 -102225500 + AT_rich Low_complexity Low_complexity 1 68 0 23 0 0 53 chr13 17519993 17520010 -102224888 + AT_rich Low_complexity Low_complexity 1 17 -19 2002 124 3 20 chr13 17520010 17520316 -102224582 - AluSq SINE Alu -12 301 1 23 0 0 53 chr13 17520316 17520336 -102224562 + AT_rich Low_complexity Low_complexity 17 36 0 282 341 11 0 chr13 17520874 17520962 -102223936 + L2 LINE L2 3223 3311 -2 707 244 311 28 chr13 17521047 17521436 -102223462 + L2 LINE L2 2321 2819 -495 1220 329 45 11 chr13 17521591 17522053 -102222845 + L2 LINE L2 2815 3292 -21 2189 104 3 0 chr13 17522057 17522345 -102222553 + AluSc SINE Alu 5 293 -16 2234 132 5 27 chr13 17523440 17523812 -102221086 - THE1B LTR MaLR 0 364 1 209 271 86 0 chr13 17523872 17523942 -102220956 - MIR SINE MIR 0 262 187 418 291 95 0 chr13 17524234 17524382 -102220516 - MIR SINE MIR -17 245 84 26 0 0 0 chr13 17524502 17524528 -102220370 + AT_rich Low_complexity Low_complexity 1 26 0 189 147 0 0 chr13 17526946 17526980 -102217918 + (GAAA)n Simple_repeat Simple_repeat 3 36 0 271 43 0 43 chr13 17527065 17527112 -102217786 + (TTG)n Simple_repeat Simple_repeat 1 45 0 210 143 0 0 chr13 17527325 17527360 -102217538 + (T)n Simple_repeat Simple_repeat 1 35 0 248 172 0 16 chr13 17528903 17528967 -102215931 + (CA)n Simple_repeat Simple_repeat 2 64 0 336 24 0 0 chr13 17529026 17529067 -102215831 + (TG)n Simple_repeat Simple_repeat 2 42 0 186 118 0 0 chr13 17529855 17529889 -102215009 + (TAGA)n Simple_repeat Simple_repeat 4 37 0 2396 142 37 40 chr13 17529933 17530362 -102214536 + MSTA LTR MaLR 1 428 0 208 158 35 18 chr13 17531367 17531424 -102213474 + T-rich Low_complexity Low_complexity 2 59 0 196 325 88 6 chr13 17531492 17531625 -102213273 + MIR SINE MIR 8 145 -63 1488 208 0 0 chr13 17533841 17534115 -102210783 + AluJo SINE Alu 30 303 -9 590 86 0 0 chr13 17534118 17534199 -102210699 + MER72 LTR ERV1 642 722 0 180 352 32 48 chr13 17534609 17534734 -102210164 + MER5A DNA MER1_type 30 152 -37 257 235 47 0 chr13 17535544 17535629 -102209269 + L1MC4 LINE L1 6614 6702 -1340 1488 170 123 62 chr13 17535655 17535996 -102208902 - MLT2D LTR ERVL -48 366 5 198 71 0 0 chr13 17536545 17536573 -102208325 + (CA)n Simple_repeat Simple_repeat 1 28 0 4972 187 73 55 chr13 17537153 17538664 -102206234 - MER52A LTR ERV1 0 1755 1 2388 70 0 10 chr13 17539315 17539617 -102205281 - AluY SINE Alu -12 299 1 435 87 0 0 chr13 17539633 17539702 -102205196 + (CA)n Simple_repeat Simple_repeat 2 70 0 285 204 0 0 chr13 17539702 17539746 -102205152 - FAM SINE Alu -69 106 63 2039 116 0 3 chr13 17539872 17540156 -102204742 + AluSq SINE Alu 1 283 -30 2469 188 112 65 chr13 17540617 17540709 -102204189 + L1MA9 LINE L1 5519 5605 -707 1867 158 7 0 chr13 17540709 17541000 -102203898 + AluSx SINE Alu 1 293 -19 2469 188 112 65 chr13 17541000 17541631 -102203267 + L1MA9 LINE L1 5605 6276 -36 733 191 0 22 chr13 17541986 17542122 -102202776 + AluJo/FLAM SINE Alu 1 133 -179 360 194 0 0 chr13 17542123 17542190 -102202708 + AluJ/FRAM SINE Alu 228 294 -8 231 189 0 0 chr13 17542964 17543001 -102201897 + 5S rRNA rRNA 2 38 -83 709 259 121 17 chr13 17543006 17543444 -102201454 + L2 LINE L2 2413 2957 -357 347 309 39 34 chr13 17543465 17543747 -102201151 - MLT1J2 LTR MaLR -14 436 84 2131 109 7 0 chr13 17543935 17544218 -102200680 - AluSx SINE Alu -27 285 1 405 316 108 58 chr13 17544222 17544602 -102200296 + MLT1J2 LTR MaLR 33 431 -19 197 290 9 37 chr13 17544612 17544719 -102200179 + L2 LINE L2 3085 3188 -125 829 251 23 32 chr13 17544729 17544948 -102199950 + MER58A DNA MER1_type 2 218 -6 523 252 16 8 chr13 17544955 17545078 -102199820 + L2 LINE L2 3190 3313 0 958 233 118 76 chr13 17545095 17545580 -102199318 + MLT1D LTR MaLR 1 505 0 401 293 115 6 chr13 17546166 17546340 -102198558 + MLT1L LTR MaLR 412 604 -11 24 32 0 0 chr13 17546805 17546836 -102198062 + AT_rich Low_complexity Low_complexity 1 31 0 305 216 108 29 chr13 17547625 17547727 -102197171 + MLT1A1 LTR MaLR 20 129 -236 1188 274 62 32 chr13 17547857 17548441 -102196457 - HAL1b LINE L1 -736 612 12 447 277 19 19 chr13 17548724 17548937 -102195961 + L1MC3 LINE L1 3275 3487 -2659 1547 173 74 28 chr13 17549012 17549364 -102195534 + THE1C LTR MaLR 5 372 -3 7775 129 35 53 chr13 17549367 17550705 -102194193 + THE1C-int LTR MaLR 1 1314 -266 339 49 0 0 chr13 17550705 17550746 -102194152 - MLT2A2 LTR ERVL 0 520 480 216 0 0 0 chr13 17550747 17550771 -102194127 + (TA)n Simple_repeat Simple_repeat 2 25 0 2415 89 3 0 chr13 17550775 17551088 -102193810 - MLT2A2 LTR ERVL -139 314 1 41267 95 11 8 chr13 17551088 17556721 -102188177 - HERVL-A2-A2 LTR ERVL 0 5654 1 3156 107 16 7 chr13 17556721 17557170 -102187728 - MLT2A2 LTR ERVL 0 453 1 1702 119 15 4 chr13 17557170 17557438 -102187460 + THE1C-int LTR MaLR 1310 1580 0 1582 161 79 37 chr13 17557440 17557795 -102187103 + THE1C LTR MaLR 3 372 -3 351 0 0 0 chr13 17557795 17557834 -102187064 + (TCTA)n Simple_repeat Simple_repeat 4 42 0 700 14 88 7 chr13 17557848 17557995 -102186903 + (TA)n Simple_repeat Simple_repeat 2 160 0 1822 229 76 19 chr13 17557995 17558427 -102186471 - MLT2B1 LTR ERVL -63 457 1 4409 186 21 10 chr13 17558469 17559295 -102185603 - ERVL-B1 LTR ERVL -235 5529 4695 1408 285 71 7 chr13 17559291 17559830 -102185068 - ERVL-B1 LTR ERVL -5084 591 5 * 1078 243 100 27 chr13 17559834 17560247 -102184651 - MLT2B1 LTR ERVL 0 464 1 4490 213 74 75 chr13 17560291 17562295 -102182603 + L1MC3 LINE L1 3530 4671 -1475 814 118 0 0 chr13 17562295 17562434 -102182464 - AluY SINE Alu 0 310 172 4490 213 74 75 chr13 17562434 17563167 -102181731 + L1MC3 LINE L1 4671 5403 -743 1362 219 19 41 chr13 17563171 17563490 -102181408 + MSTD LTR MaLR 84 395 -1 445 98 12 12 chr13 17563491 17563573 -102181325 + (TCTA)n Simple_repeat Simple_repeat 2 83 0 2227 140 5 27 chr13 17564619 17564991 -102179907 + THE1B LTR MaLR 1 364 0 50 42 0 0 chr13 17566257 17566328 -102178570 + AT_rich Low_complexity Low_complexity 1 71 0 1301 78 0 31 chr13 17566419 17566610 -102178288 + L1PA8 LINE L1 5987 6171 -1 204 179 0 0 chr13 17566907 17566946 -102177952 + (TATATG)n Simple_repeat Simple_repeat 2 40 0 199 93 47 0 chr13 17567562 17567605 -102177293 + (TA)n Simple_repeat Simple_repeat 1 45 0 277 322 30 10 chr13 17567646 17567756 -102177142 - MIR SINE MIR -63 145 38 21 0 0 0 chr13 17567869 17567890 -102177008 + AT_rich Low_complexity Low_complexity 1 21 0 196 359 142 0 chr13 17568952 17569058 -102175840 + MIR SINE MIR 17 137 -125 25 0 0 0 chr13 17569144 17569169 -102175729 + AT_rich Low_complexity Low_complexity 1 25 0 29 0 0 0 chr13 17569228 17569257 -102175641 + AT_rich Low_complexity Low_complexity 1 29 0 29 0 0 0 chr13 17569281 17569310 -102175588 + AT_rich Low_complexity Low_complexity 1 29 0 252 0 0 0 chr13 17569635 17569663 -102175235 + (T)n Simple_repeat Simple_repeat 1 28 0 4197 189 42 9 chr13 17570131 17570193 -102174705 - L1MC2 LINE L1 -6 6338 6280 2329 87 7 0 chr13 17570193 17570492 -102174406 + AluY SINE Alu 1 301 -10 4197 189 42 9 chr13 17570492 17571325 -102173573 - L1MC2 LINE L1 -64 6280 5413 2006 105 36 0 chr13 17571334 17571639 -102173259 - L1PA16 LINE L1 -9 6157 5842 715 137 86 0 chr13 17571639 17571814 -102173084 - L1MC2 LINE L1 -743 5403 5224 2339 103 0 0 chr13 17573000 17573301 -102171597 - AluSq SINE Alu -12 301 1 941 203 17 0 chr13 17573686 17573863 -102171035 - AluSg/x SINE Alu -1 311 132 2128 133 0 9 chr13 17573863 17574178 -102170720 - AluSx SINE Alu 0 312 1 558 89 13 0 chr13 17574588 17574667 -102170231 - MADE1 DNA Mariner 0 80 1 182 357 20 31 chr13 17574883 17574981 -102169917 - L3b LINE CR1 -267 1316 1220 913 266 22 0 chr13 17576013 17576235 -102168663 + MIR SINE MIR 36 262 0 526 220 55 0 chr13 17576800 17576909 -102167989 + MIR3 SINE MIR 82 196 -12 207 200 62 113 chr13 17577159 17577239 -102167659 + L2 LINE L2 3197 3272 0 225 0 0 0 chr13 17577697 17577722 -102167176 + (TTTG)n Simple_repeat Simple_repeat 2 26 0 21 0 0 0 chr13 17578196 17578217 -102166681 + AT_rich Low_complexity Low_complexity 1 21 0 23 68 0 0 chr13 17578853 17578897 -102166001 + AT_rich Low_complexity Low_complexity 1 44 0 183 299 75 47 chr13 17579825 17579932 -102164966 + L2 LINE L2 3197 3306 -7 226 338 203 23 chr13 17580265 17580398 -102164500 - MIR3 SINE MIR -6 202 46 32 0 0 0 chr13 17580817 17580849 -102164049 + AT_rich Low_complexity Low_complexity 1 32 0 1203 242 168 66 chr13 17582128 17582615 -102162283 - MLT1F LTR MaLR 0 542 6 258 32 0 0 chr13 17583192 17583223 -102161675 + (TA)n Simple_repeat Simple_repeat 1 31 0 * 531 31 0 0 chr13 17583222 17583287 -102161611 + (GA)n Simple_repeat Simple_repeat 2 66 0 428 261 27 9 chr13 17583289 17583400 -102161498 + MER5B DNA MER1_type 63 175 -3 11645 196 11 79 chr13 17583639 17585876 -102159022 + L1 LINE L1 2286 4435 -1711 1136 157 0 0 chr13 17585876 17586054 -102158844 + AluSp SINE Alu 136 313 0 11645 196 11 79 chr13 17586054 17586789 -102158109 + L1 LINE L1 4435 5219 -927 470 127 7 72 chr13 17586790 17587086 -102157812 + (CCCTAA)n Simple_repeat Simple_repeat 1 276 0 2908 155 2 14 chr13 17587230 17587747 -102157151 - TAR1 Satellite telomeric -43 2068 1558 387 275 33 0 chr13 17589010 17589130 -102155768 + MIR SINE MIR 84 207 -55 692 270 0 27 chr13 17589138 17589323 -102155575 - MIR SINE MIR -6 256 77 236 30 30 0 chr13 17589339 17589372 -102155526 + (TTCA)n Simple_repeat Simple_repeat 3 36 0 222 226 19 0 chr13 17590045 17590098 -102154800 - L3b LINE CR1 -195 1388 1335 520 285 40 7 chr13 17590349 17590500 -102154398 - MIR3 SINE MIR -34 174 19 353 286 29 21 chr13 17590757 17590897 -102154001 - MIR SINE MIR -87 175 35 214 208 0 21 chr13 17591154 17591202 -102153696 + MIR SINE MIR 206 252 -10 270 284 51 60 chr13 17591852 17591952 -102152946 + MIR3 SINE MIR 79 178 -30 573 246 221 5 chr13 17592492 17592691 -102152207 - MIR SINE MIR -7 255 14 387 292 30 46 chr13 17592977 17593117 -102151781 - MIR SINE MIR -48 160 28 2335 92 0 3 chr13 17593120 17593423 -102151475 - AluSg SINE Alu -8 302 1 225 274 113 28 chr13 17594100 17594206 -102150692 + L2 LINE L2 3158 3272 0 550 314 41 18 chr13 17594508 17594728 -102150170 + MIR SINE MIR 2 226 -36 1204 139 34 29 chr13 17594850 17595058 -102149840 - AluJo SINE Alu -98 214 6 328 78 0 112 chr13 17595480 17595659 -102149239 + (TGGGGG)n Simple_repeat Simple_repeat 2 160 0 639 241 99 0 chr13 17596359 17596500 -102148398 + FRAM SINE Alu 1 155 -21 2076 122 0 3 chr13 17596502 17596796 -102148102 + AluSx SINE Alu 1 293 -19 22 0 0 0 chr13 17597072 17597094 -102147804 + AT_rich Low_complexity Low_complexity 1 22 0 24 0 0 0 chr13 17597169 17597193 -102147705 + AT_rich Low_complexity Low_complexity 1 24 0 745 324 109 30 chr13 17597320 17597795 -102147103 + L1MDb LINE L1 104 616 -5793 259 231 122 39 chr13 17597802 17597958 -102146940 + L1MDb LINE L1 454 622 -5787 321 322 71 33 chr13 17597975 17598186 -102146712 + L1MDb LINE L1 408 626 -5783 304 298 166 47 chr13 17598353 17598588 -102146310 + L1M2 LINE L1 982 1244 -5605 543 271 55 52 chr13 17599630 17600013 -102144885 - HSREP522 Satellite telomeric 0 504 121 229 310 17 35 chr13 17601248 17601422 -102143476 + GA-rich Low_complexity Low_complexity 5 175 0 334 183 0 14 chr13 17602195 17602266 -102142632 - L1 LINE L1 -3308 2838 2769 219 36 0 0 chr13 17602273 17602301 -102142597 + (GTTTG)n Simple_repeat Simple_repeat 2 29 0 1721 142 32 4 chr13 17602301 17602577 -102142321 - AluSx SINE Alu -27 285 2 2254 218 14 10 chr13 17602577 17603072 -102141826 - L1 LINE L1 -2203 3943 3447 1675 243 16 0 chr13 17603074 17603445 -102141453 - MSTB LTR MaLR -49 377 1 3237 204 21 3 chr13 17603445 17604066 -102140832 - MSTB-int LTR MaLR 0 1651 1020 4568 273 37 26 chr13 17604068 17605637 -102139261 - L1P LINE L1 -2696 3450 1860 2045 142 0 0 chr13 17605637 17605932 -102138966 + AluSx SINE Alu 1 295 -17 4568 273 37 26 chr13 17605932 17606057 -102138841 - L1P LINE L1 -4286 1860 1738 5597 132 46 42 chr13 17606070 17608768 -102136130 + SVA Other Other 432 1384 -2 351 0 0 0 chr13 17608797 17608836 -102136062 + (TG)n Simple_repeat Simple_repeat 2 40 0 309 317 63 7 chr13 17610219 17610361 -102134537 + L2 LINE L2 2722 2871 -443 277 289 0 0 chr13 17611167 17611257 -102133641 - L1MC4 LINE L1 -1339 6703 6614 22 56 0 0 chr13 17614149 17614185 -102130713 + AT_rich Low_complexity Low_complexity 1 36 0 368 294 88 23 chr13 17614331 17614637 -102130261 + L1ME4a LINE L1 5518 5843 -278 338 282 86 0 chr13 17615106 17615223 -102129675 - L2 LINE L2 0 3313 3187 931 334 84 36 chr13 17615437 17616126 -102128772 + L1MEc LINE L1 40 761 -5635 248 231 58 70 chr13 17616094 17616250 -102128648 + L1MEc LINE L1 973 1126 -5270 * 1338 224 41 94 chr13 17616403 17616644 -102128254 + L1MEc LINE L1 1944 2196 -4019 282 56 0 0 chr13 17616644 17616680 -102128218 + (TA)n Simple_repeat Simple_repeat 1 36 0 1338 224 41 94 chr13 17616680 17617273 -102127625 + L1MEc LINE L1 2196 2691 -3524 842 279 55 40 chr13 17617290 17617688 -102127210 + L1MEc LINE L1 2791 3194 -3021 1413 244 20 11 chr13 17617701 17618058 -102126840 + MLT1A1 LTR MaLR 6 365 0 339 294 71 20 chr13 17618075 17618327 -102126571 + L1MEc LINE L1 3230 3494 -2721 4195 79 8 11 chr13 17618328 17619300 -102125598 + L1P2 LINE L1 4851 5816 -338 276 306 25 19 chr13 17619535 17619692 -102125206 + L1ME3A LINE L1 5770 5927 -243 180 0 0 0 chr13 17619890 17619910 -102124988 + (TTA)n Simple_repeat Simple_repeat 2 21 0 1099 58 0 0 chr13 17619914 17620052 -102124846 - AluY SINE Alu -13 298 161 395 165 12 0 chr13 17620084 17620169 -102124729 + (CA)n Simple_repeat Simple_repeat 1 86 0 24 85 0 0 chr13 17621575 17621634 -102123264 + AT_rich Low_complexity Low_complexity 1 59 0 353 221 307 21 chr13 17622326 17622466 -102122432 + MER5A DNA MER1_type 9 188 -1 1698 164 43 16 chr13 17623160 17623464 -102121434 - AluSx SINE Alu 0 312 1 23 33 0 0 chr13 17623466 17623496 -102121402 + AT_rich Low_complexity Low_complexity 1 30 0 21 36 0 0 chr13 17624021 17624049 -102120849 + AT_rich Low_complexity Low_complexity 1 28 0 182 300 114 29 chr13 17624243 17624313 -102120585 - L2 LINE L2 -29 3243 3168 * 225 330 66 9 chr13 17624305 17624411 -102120487 + L2 LINE L2 2946 3057 -256 263 306 82 41 chr13 17624858 17625054 -102119844 - MIR SINE MIR -50 212 9 1937 101 0 4 chr13 17625681 17625939 -102118959 - AluY SINE Alu -5 306 50 217 363 61 52 chr13 17626861 17627189 -102117709 - L2 LINE L2 -339 2975 2645 21 57 0 0 chr13 17627727 17627762 -102117136 + AT_rich Low_complexity Low_complexity 1 35 0 725 249 61 0 chr13 17628909 17629106 -102115792 - L1MA4 LINE L1 -4 6296 6088 24 0 0 0 chr13 17629192 17629216 -102115682 + AT_rich Low_complexity Low_complexity 1 24 0 23 0 0 0 chr13 17629464 17629487 -102115411 + AT_rich Low_complexity Low_complexity 1 23 0 27 29 0 0 chr13 17630052 17630086 -102114812 + AT_rich Low_complexity Low_complexity 1 34 0 1738 68 0 5 chr13 17630256 17630475 -102114423 + AluY SINE Alu 84 301 -10 1794 148 34 3 chr13 17630485 17630783 -102114115 + AluSc SINE Alu 1 307 -2 25 0 0 0 chr13 17630796 17630821 -102114077 + AT_rich Low_complexity Low_complexity 1 25 0 21 36 0 0 chr13 17630951 17630979 -102113919 + AT_rich Low_complexity Low_complexity 1 28 0 633 202 9 0 chr13 17631513 17631627 -102113271 - FLAM_A SINE Alu -15 118 4 2302 60 10 3 chr13 17632504 17632802 -102112096 - AluY SINE Alu -11 300 1 219 198 8 83 chr13 17634557 17634678 -102110220 + A-rich Low_complexity Low_complexity 5 116 0 401 378 5 15 chr13 17635142 17635338 -102109560 + MIR SINE MIR 63 256 -6 419 162 95 0 chr13 17635485 17635559 -102109339 + AluSp SINE Alu 117 197 -106 560 161 25 8 chr13 17685560 17685678 -102059220 + L1PA16 LINE L1 6044 6163 -3 264 187 67 27 chr13 17685682 17685757 -102059141 + L1ME4a LINE L1 5966 6043 -78 201 147 0 0 chr13 17687972 17688006 -102056892 + (CA)n Simple_repeat Simple_repeat 1 34 0 4837 95 28 0 chr13 17688283 17688784 -102056114 - L1PA13 LINE L1 -7 6156 5627 2561 107 0 27 chr13 17688784 17689158 -102055740 + THE1B LTR MaLR 1 364 0 4837 95 28 0 chr13 17689158 17689379 -102055519 - L1PA13 LINE L1 -536 5627 5414 2214 190 29 16 chr13 17689759 17690436 -102054462 - L1M4 LINE L1 -405 6277 5592 709 233 28 40 chr13 17690455 17690708 -102054190 - L1M4 LINE L1 -2191 4453 4204 5117 188 15 20 chr13 17690713 17692287 -102052611 - L1PA16 LINE L1 -5 6864 5302 * 9698 118 17 29 chr13 17692281 17693747 -102051151 + THE1B-int LTR MaLR 133 1580 0 2539 100 5 24 chr13 17693747 17694118 -102050780 + THE1B LTR MaLR 1 364 0 263 231 22 88 chr13 17694129 17694220 -102050678 + L1PA15-16 LINE L1 1112 1196 -5653 * 6298 226 19 8 chr13 17694171 17695597 -102049301 - L1PA16 LINE L1 -5592 1257 5 603 219 103 0 chr13 17695612 17695767 -102049131 - L1M4 LINE L1 -2448 4196 4026 4601 257 74 45 chr13 17695822 17698635 -102046263 - L1M4c LINE L1 -3653 2991 2 278 317 33 17 chr13 17699674 17699794 -102045104 + L2 LINE L2 3192 3313 0 21 89 0 0 chr13 17699878 17699934 -102044964 + AT_rich Low_complexity Low_complexity 1 56 0 262 331 24 24 chr13 17699991 17700115 -102044783 - MIR SINE MIR -110 152 29 346 320 138 57 chr13 17700247 17700725 -102044173 - MLT1F LTR MaLR -8 534 18 238 255 89 76 chr13 17700799 17700956 -102043942 + MIR SINE MIR 60 218 -44 827 319 88 0 chr13 17701719 17702039 -102042859 - L2 LINE L2 -1646 1668 1321 656 302 32 29 chr13 17702134 17702412 -102042486 + MLT1K LTR MaLR 300 578 -10 366 274 61 17 chr13 17702520 17702649 -102042249 + MIR SINE MIR 37 170 -63 363 319 48 24 chr13 17702645 17702811 -102042087 - MIR SINE MIR -30 232 63 * 268 297 22 72 chr13 17702833 17702971 -102041927 - MER94 DNA DNA 0 134 4 1140 282 96 14 chr13 17702971 17703386 -102041512 - LTR16A LTR ERVL -1 449 1 2366 64 0 13 chr13 17703460 17703758 -102041140 - AluY SINE Alu -17 294 1 22 35 0 0 chr13 17703921 17703950 -102040948 + AT_rich Low_complexity Low_complexity 1 29 0 2545 183 55 6 chr13 17704566 17705058 -102039840 + MLT2B1 LTR ERVL 1 516 -4 225 0 0 0 chr13 17705218 17705243 -102039655 + (TCTA)n Simple_repeat Simple_repeat 4 28 0 3348 94 78 166 chr13 17706251 17707005 -102037893 - LTR12 LTR ERV1 0 688 1 709 213 38 47 chr13 17707219 17707454 -102037444 - pTR5 LTR ERV1 -1463 975 743 2290 68 0 40 chr13 17707503 17707825 -102037073 + AluY SINE Alu 1 309 -2 229 152 22 0 chr13 17710151 17710197 -102034701 - HAL1 LINE L1 -134 2373 2327 257 209 22 143 chr13 17710207 17710298 -102034600 + MER77 LTR ERV1 11 90 -515 2629 174 99 36 chr13 17711111 17711776 -102033122 + MER39 LTR ERV1 1 707 0 366 333 57 13 chr13 17712010 17712169 -102032729 - L2 LINE L2 -329 2984 2819 497 223 0 7 chr13 17712306 17712494 -102032404 + MER58A DNA MER1_type 1 223 -1 1443 201 14 10 chr13 17712853 17713146 -102031752 - AluJb SINE Alu -16 296 3 33 43 0 0 chr13 17713788 17713835 -102031063 + AT_rich Low_complexity Low_complexity 1 47 0 312 27 0 0 chr13 17716034 17716071 -102028827 + (TG)n Simple_repeat Simple_repeat 2 38 0 4083 190 33 21 chr13 17716694 17718263 -102026635 + L1MB1 LINE L1 4545 6123 -45 24 77 0 0 chr13 17718318 17718370 -102026528 + AT_rich Low_complexity Low_complexity 1 52 0 2484 61 0 3 chr13 17718397 17718707 -102026191 - AluY SINE Alu -2 309 1 2778 13 0 0 chr13 17719018 17719328 -102025570 - AluYa5 SINE Alu -1 310 1 27 49 0 0 chr13 17720153 17720194 -102024704 + AT_rich Low_complexity Low_complexity 1 41 0 23 33 0 0 chr13 17720844 17720874 -102024024 + AT_rich Low_complexity Low_complexity 1 30 0 24 53 0 0 chr13 17720991 17721029 -102023869 + AT_rich Low_complexity Low_complexity 1 38 0 2039 145 89 8 chr13 17721127 17721499 -102023399 - MSTA LTR MaLR 0 428 27 2469 156 20 0 chr13 17721524 17721921 -102022977 - MSTA-int LTR MaLR 0 1651 1247 594 202 17 6 chr13 17721997 17722170 -102022728 + CT-rich Low_complexity Low_complexity 3 177 0 247 368 40 8 chr13 17722258 17722383 -102022515 - L2 LINE L2 -2 3270 3142 311 0 26 0 chr13 17722735 17722774 -102022124 + (TA)n Simple_repeat Simple_repeat 1 40 0 5438 239 62 26 chr13 17722775 17724794 -102020104 - L1M4 LINE L1 -1355 4791 2700 395 276 94 0 chr13 17724799 17724969 -102019929 - L1M4 LINE L1 -3488 2658 2473 2665 184 4 2 chr13 17725027 17725512 -102019386 - L1MA4 LINE L1 -195 6105 5620 658 221 7 13 chr13 17725653 17725807 -102019091 + L1M4 LINE L1 6 158 -6384 9714 198 43 26 chr13 17725842 17726616 -102018282 - L1MA4 LINE L1 -738 5567 4807 2076 101 18 4 chr13 17726616 17726917 -102017981 - AluSg SINE Alu 0 305 1 9714 198 43 26 chr13 17726917 17728957 -102015941 - L1MA4 LINE L1 -1498 4807 2131 502 271 54 0 chr13 17729070 17729236 -102015662 - L1MB4 LINE L1 0 6180 6006 592 238 60 12 chr13 17729256 17729424 -102015474 - L1M4 LINE L1 -1281 4865 4690 2787 247 71 10 chr13 17729436 17730080 -102014818 - L1MB4 LINE L1 -180 6000 5396 2013 121 0 0 chr13 17730080 17730360 -102014538 - AluSq SINE Alu -31 282 3 2787 247 71 10 chr13 17730360 17731284 -102013614 - L1MB4 LINE L1 -784 5396 4352 856 247 19 3 chr13 17731274 17731537 -102013361 - L1MB4 LINE L1 -2413 3733 3471 * 1613 186 25 74 chr13 17931664 17931830 -101813068 + MLT1A2 LTR MaLR 1 173 -201 2090 129 10 3 chr13 17931830 17932125 -101812773 + AluSx SINE Alu 1 297 -15 1613 186 25 74 chr13 17932125 17932322 -101812576 + MLT1A2 LTR MaLR 173 346 -28 278 25 0 25 chr13 17932322 17932362 -101812536 + (TTTG)n Simple_repeat Simple_repeat 2 40 0 1613 186 25 74 chr13 17932362 17932390 -101812508 + MLT1A2 LTR MaLR 346 374 0 1860 151 6 28 chr13 17932396 17932715 -101812183 - AluJo SINE Alu 0 312 1 332 329 70 35 chr13 17932723 17932951 -101811947 - L1M4 LINE L1 -3568 2578 2343 939 288 22 38 chr13 17933004 17933320 -101811578 - LTR16A LTR ERVL -32 418 108 22 0 0 0 chr13 17933480 17933502 -101811396 + AT_rich Low_complexity Low_complexity 1 22 0 2153 115 3 0 chr13 17933634 17933922 -101810976 - AluSg SINE Alu -21 289 1 2310 115 0 0 chr13 17934219 17934531 -101810367 - AluSx SINE Alu 0 312 1 2001 137 3 10 chr13 17934595 17934901 -101809997 - AluSx SINE Alu -8 304 1 946 164 55 6 chr13 17934904 17935027 -101809871 - L1M3 LINE L1 -560 5611 5475 207 0 0 0 chr13 17935027 17935050 -101809848 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 946 164 55 6 chr13 17935050 17935109 -101809789 - L1M3 LINE L1 -696 5475 5420 725 179 17 0 chr13 17935109 17935226 -101809672 - AluSg/x SINE Alu -9 303 185 2200 99 7 0 chr13 17935904 17936212 -101808686 + AluSq SINE Alu 1 310 0 33 66 0 0 chr13 17936528 17936589 -101808309 + AT_rich Low_complexity Low_complexity 1 61 0 1797 98 70 35 chr13 17936617 17936902 -101807996 - AluSg SINE Alu -15 295 1 803 100 0 50 chr13 17936921 17937041 -101807857 - AluSg/x SINE Alu -11 301 188 35 0 0 0 chr13 17937070 17937105 -101807793 + AT_rich Low_complexity Low_complexity 1 35 0 4839 36 0 23 chr13 17937105 17937680 -101807218 - L1PA4 LINE L1 -3 6152 5591 2043 106 39 7 chr13 17937689 17937972 -101806926 + AluSx SINE Alu 1 292 -20 1527 142 138 87 chr13 17938033 17938485 -101806413 + LTR54B LTR ERV1 1 479 -19 2512 76 0 0 chr13 17938485 17938788 -101806110 - AluSx SINE Alu -9 303 1 1527 142 138 87 chr13 17938788 17938807 -101806091 + LTR54B LTR ERV1 479 496 -2 24 53 0 0 chr13 17938830 17938868 -101806030 + AT_rich Low_complexity Low_complexity 1 38 0 489 273 8 8 chr13 17939234 17939366 -101805532 - MIR SINE MIR -15 247 116 254 326 31 8 chr13 17939384 17939513 -101805385 + L1MC4a LINE L1 5793 5924 -1884 1857 160 20 0 chr13 17940492 17940798 -101804100 + AluSx SINE Alu 1 312 0 935 286 54 27 chr13 17940812 17941182 -101803716 - MER93a LTR ERV1 -4 398 19 1446 185 15 59 chr13 17941185 17941509 -101803389 - AluJo SINE Alu -2 310 1 918 213 81 52 chr13 17941520 17941928 -101802970 + Charlie2 DNA MER1_type 2235 2654 -208 1439 171 0 28 chr13 17941931 17942183 -101802715 + AluJo SINE Alu 47 291 -21 876 249 95 21 chr13 17942201 17942404 -101802494 - Charlie2 DNA MER1_type -639 2223 1984 1802 211 32 51 chr13 17942404 17942877 -101802021 - MLT1C LTR MaLR -3 464 1 876 249 95 21 chr13 17942877 17943010 -101801888 - Charlie2 DNA MER1_type -878 1984 1862 498 264 218 0 chr13 17943022 17943238 -101801660 - Charlie2 DNA MER1_type -2540 322 60 278 258 89 16 chr13 17943844 17943968 -101800930 + L1MC4a LINE L1 5765 5897 -1911 2160 115 0 3 chr13 17944140 17944435 -101800463 - AluSx SINE Alu -18 294 1 221 188 29 29 chr13 17944451 17944520 -101800378 + A-rich Low_complexity Low_complexity 4 72 0 1918 140 0 0 chr13 17944736 17945007 -101799891 - AluSx SINE Alu -32 280 10 21 0 0 0 chr13 17945174 17945195 -101799703 + AT_rich Low_complexity Low_complexity 1 21 0 1705 93 0 25 chr13 17945208 17945444 -101799454 + AluSp SINE Alu 84 313 0 528 293 77 34 chr13 17945534 17945831 -101799067 + L2 LINE L2 2551 2860 -454 474 350 79 18 chr13 17945924 17946201 -101798697 + L2 LINE L2 3019 3312 -1 2336 55 0 61 chr13 17946480 17946824 -101798074 - AluY SINE Alu 0 311 1 2132 107 6 31 chr13 17946916 17947128 -101797770 - AluSq SINE Alu -4 309 106 234 0 0 0 chr13 17947128 17947154 -101797744 + (CTAGG)n Simple_repeat Simple_repeat 4 29 0 2132 107 6 31 chr13 17947154 17947258 -101797640 - AluSq SINE Alu -207 106 1 3405 150 14 12 chr13 17947504 17948078 -101796820 + L1MC1 LINE L1 5428 6002 -331 1247 158 27 18 chr13 17948104 17948326 -101796572 + L1MC1 LINE L1 6104 6327 -6 216 0 0 0 chr13 17948425 17948449 -101796449 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 1501 155 22 43 chr13 17948477 17948592 -101796306 + AluJb SINE Alu 26 142 -170 2176 114 6 19 chr13 17948592 17948908 -101795990 + AluSx SINE Alu 1 312 0 1501 155 22 43 chr13 17948908 17949069 -101795829 + AluJb SINE Alu 142 296 -16 2189 116 7 0 chr13 17949071 17949373 -101795525 + AluSg SINE Alu 1 304 -6 340 118 29 15 chr13 17949392 17949460 -101795438 + GA-rich Low_complexity Low_complexity 4 72 0 1033 168 0 53 chr13 17949460 17949650 -101795248 + AluJo SINE Alu 6 185 -127 37 0 0 0 chr13 17949650 17949687 -101795211 + AT_rich Low_complexity Low_complexity 1 37 0 2302 181 18 2 chr13 17949810 17950207 -101794691 + MER57A LTR ERV1 1 403 0 204 295 16 0 chr13 17950272 17950333 -101794565 - MIR3 SINE MIR -3 205 144 1290 110 53 57 chr13 17950370 17950598 -101794300 - MER30 DNA MER1_type 0 230 4 4597 151 49 21 chr13 17950661 17950872 -101794026 + L1MA8 LINE L1 5107 5311 -980 1826 148 0 40 chr13 17950872 17951176 -101793722 + AluSx SINE Alu 1 292 -20 4597 151 49 21 chr13 17951176 17951187 -101793711 + L1MA8 LINE L1 5311 5320 -971 4597 137 32 30 chr13 17951187 17951995 -101792903 + L1MA8 LINE L1 5480 6289 -2 4597 151 49 21 chr13 17951995 17952016 -101792882 + L1MA8 LINE L1 5320 6289 -2 247 263 102 68 chr13 17952227 17952310 -101792588 - MIR3 SINE MIR -30 178 88 1443 201 110 48 chr13 17952310 17952683 -101792215 + MSTD LTR MaLR 1 396 0 247 263 102 68 chr13 17952683 17952717 -101792181 - MIR3 SINE MIR -120 88 57 2508 75 0 3 chr13 17952867 17953172 -101791726 + AluSc SINE Alu 1 304 -5 531 201 56 153 chr13 17953271 17953559 -101791339 - MER112 DNA MER1_type 0 260 1 2408 52 42 0 chr13 17953591 17953880 -101791018 - AluY SINE Alu -10 301 1 209 204 20 20 chr13 17953954 17954003 -101790895 + MIR SINE MIR 4 52 -210 2036 144 3 3 chr13 17954278 17954576 -101790322 - AluSx SINE Alu -14 298 1 270 0 0 0 chr13 17954603 17954633 -101790265 + (TTA)n Simple_repeat Simple_repeat 2 31 0 513 278 37 53 chr13 17954736 17954981 -101789917 - MIR SINE MIR 0 262 22 1217 84 0 0 chr13 17955095 17955250 -101789648 - AluSg/x SINE Alu -21 289 135 184 260 20 0 chr13 17955262 17955312 -101789586 - MIR SINE MIR -110 152 102 2393 170 46 11 chr13 17955449 17955908 -101788990 - L1MB7 LINE L1 -16 6168 5694 21 82 0 0 chr13 17957768 17957817 -101787081 + GC_rich Low_complexity Low_complexity 1 49 0 209 221 47 35 chr13 17957925 17958011 -101786887 + G-rich Low_complexity Low_complexity 4 90 0 24 67 0 0 chr13 17958135 17958180 -101786718 + GC_rich Low_complexity Low_complexity 1 45 0 213 185 83 28 chr13 17958654 17958762 -101786136 + (CGGGG)n Simple_repeat Simple_repeat 1 114 0 * 223 167 61 0 chr13 17958707 17958773 -101786125 + (CGG)n Simple_repeat Simple_repeat 1 70 0 24 32 0 0 chr13 17958805 17958836 -101786062 + GC_rich Low_complexity Low_complexity 1 31 0 313 229 46 37 chr13 17960676 17960785 -101784113 - L1MC5 LINE L1 -30 7931 7822 21 36 0 0 chr13 17961982 17962010 -101782888 + AT_rich Low_complexity Low_complexity 1 28 0 180 0 0 0 chr13 17962052 17962072 -101782826 + (TA)n Simple_repeat Simple_repeat 2 21 0 2309 117 3 0 chr13 17962072 17962379 -101782519 - AluSq SINE Alu -5 308 1 2017 89 22 61 chr13 17962380 17962693 -101782205 - AluSx SINE Alu -11 301 1 2060 133 10 0 chr13 17963652 17963952 -101780946 + AluSx SINE Alu 1 303 -9 812 160 0 0 chr13 17963995 17964120 -101780778 - FLAM_C SINE Alu -18 125 1 783 107 99 0 chr13 17964534 17964655 -101780243 + L1PA6 LINE L1 6022 6154 0 2238 110 3 19 chr13 17965324 17965634 -101779264 - AluSx SINE Alu -7 305 1 2118 107 4 0 chr13 17965672 17965989 -101778909 - AluSp SINE Alu 0 318 1 1914 119 49 0 chr13 17966010 17966296 -101778602 - AluSp SINE Alu -13 300 1 439 241 35 28 chr13 17967025 17967170 -101777728 + L1ME1 LINE L1 6017 6162 -4 269 290 142 41 chr13 17967187 17967356 -101777542 + MIR SINE MIR 64 249 -13 2062 105 0 60 chr13 17967803 17968117 -101776781 - AluSq SINE Alu -18 295 1 256 304 54 18 chr13 17968911 17969023 -101775875 + MIR SINE MIR 42 157 -105 198 0 0 0 chr13 17970156 17970178 -101774720 + (A)n Simple_repeat Simple_repeat 1 22 0 314 333 106 80 chr13 17970216 17970630 -101774268 - L2 LINE L2 -4 3268 2844 210 191 0 0 chr13 17970776 17970818 -101774080 + (TA)n Simple_repeat Simple_repeat 1 42 0 2223 124 3 0 chr13 17970818 17971125 -101773773 - AluSp SINE Alu -5 308 1 382 321 194 19 chr13 17971178 17971555 -101773343 - L2 LINE L2 -697 2617 2175 761 294 127 20 chr13 17971997 17972399 -101772499 - L1MC4a LINE L1 -1896 5912 5468 258 81 0 0 chr13 17972453 17972490 -101772408 + (TA)n Simple_repeat Simple_repeat 1 37 0 2408 90 0 0 chr13 17972491 17972792 -101772106 - AluSq SINE Alu -12 301 1 2350 104 0 13 chr13 17972944 17973260 -101771638 + AluSx SINE Alu 1 312 0 1429 134 36 13 chr13 17973298 17973522 -101771376 - MER30 DNA MER1_type 0 230 2 338 228 49 41 chr13 17973536 17973659 -101771239 + L1M4 LINE L1 4487 4610 -1536 447 288 134 22 chr13 17973824 17974034 -101770864 - L1MC4a LINE L1 -1904 5904 5644 2229 96 14 0 chr13 17974034 17974325 -101770573 - AluSg SINE Alu -15 295 1 447 288 134 22 chr13 17974325 17974434 -101770464 - L1MC4a LINE L1 -2164 5644 5549 2996 185 63 9 chr13 17974745 17975393 -101769505 - L1MB4 LINE L1 -14 6166 5484 405 0 0 0 chr13 17975417 17975462 -101769436 + (TATG)n Simple_repeat Simple_repeat 3 47 0 743 173 0 39 chr13 17975462 17975580 -101769318 - FLAM_C SINE Alu -187 115 1 2226 115 13 0 chr13 17975607 17975911 -101768987 + AluSc SINE Alu 1 308 -1 1838 187 66 0 chr13 17975963 17976326 -101768572 - L1MB2 LINE L1 -2 6169 5783 * 2423 214 109 71 chr13 17976319 17976740 -101768158 - L1M4 LINE L1 -3493 3151 2747 815 169 0 29 chr13 17976740 17976876 -101768022 - FLAM_C SINE Alu -1 132 1 2423 214 109 71 chr13 17976876 17977034 -101767864 - L1M4 LINE L1 -3897 2747 2596 2334 77 10 13 chr13 17977034 17977345 -101767553 - AluY SINE Alu -1 310 1 2423 214 109 71 chr13 17977345 17977436 -101767462 - L1M4 LINE L1 -4048 2596 2510 2225 98 0 3 chr13 17977436 17977732 -101767166 - AluY SINE Alu -16 295 1 2423 214 109 71 chr13 17977732 17977970 -101766928 - L1M4 LINE L1 -4134 2510 2282 2273 87 7 10 chr13 17977970 17978270 -101766628 - AluSp SINE Alu -14 299 1 2423 214 109 71 chr13 17978270 17978891 -101766007 - L1M4 LINE L1 -4362 2282 1566 291 236 59 98 chr13 17978894 17979097 -101765801 - L1M4 LINE L1 -5520 1022 828 328 344 43 66 chr13 17979238 17979543 -101765355 - L1M4 LINE L1 -6084 562 265 41 14 5 0 chr13 17979604 17979687 -101765211 + AT_rich Low_complexity Low_complexity 1 48 0 326 269 138 30 chr13 17979769 17980025 -101764873 - L1M4 LINE L1 -1173 4973 4657 2311 113 0 3 chr13 17980025 17980335 -101764563 + AluSx SINE Alu 1 309 -3 326 269 138 30 chr13 17980335 17980476 -101764422 - L1M4 LINE L1 -1489 4657 4533 1721 197 3 0 chr13 17980545 17980881 -101764017 + AluJo SINE Alu 1 337 0 1050 134 24 93 chr13 17980889 17981135 -101763763 - L1MC5 LINE L1 -1023 6938 6710 796 283 112 40 chr13 17981138 17981781 -101763117 - HAL1 LINE L1 -1400 1107 419 2019 112 0 0 chr13 17981837 17982106 -101762792 - AluSx SINE Alu -6 306 38 392 42 0 0 chr13 17982155 17982203 -101762695 + MADE1 DNA Mariner 1 48 -32 627 269 10 35 chr13 17982338 17982539 -101762359 - HAL1 LINE L1 -2272 235 40 377 392 25 32 chr13 17982556 17982703 -101762195 - L1M4 LINE L1 -1821 4325 4179 2233 111 0 3 chr13 17982703 17983001 -101761897 - AluSx SINE Alu -15 297 1 377 392 25 32 chr13 17983001 17983131 -101761767 - L1M4 LINE L1 -1967 4179 4050 1912 159 3 0 chr13 17983174 17983483 -101761415 - AluJb SINE Alu -2 310 1 1737 192 0 0 chr13 17984682 17984979 -101759919 - AluJb SINE Alu -15 297 1 1291 135 19 126 chr13 17985115 17985456 -101759442 + AluJo SINE Alu 1 307 0 1294 194 3 45 chr13 17985458 17985747 -101759151 + AluJo SINE Alu 1 277 -35 251 27 0 27 chr13 17985749 17985786 -101759112 + (CAAA)n Simple_repeat Simple_repeat 1 36 0 458 171 128 8 chr13 17985818 17985935 -101758963 + FLAM_A SINE Alu 12 142 0 24 32 0 0 chr13 17986116 17986147 -101758751 + AT_rich Low_complexity Low_complexity 1 31 0 264 321 169 27 chr13 17986256 17986376 -101758522 - MIR SINE MIR 0 262 160 2372 84 0 28 chr13 17986376 17986696 -101758202 + AluSx SINE Alu 1 311 -1 264 321 169 27 chr13 17986696 17986759 -101758139 - MIR SINE MIR -102 160 53 2090 103 3 3 chr13 17986824 17987115 -101757783 - AluSg SINE Alu -17 293 3 382 116 0 23 chr13 17987127 17987213 -101757685 + (TG)n Simple_repeat Simple_repeat 2 85 0 1214 181 23 5 chr13 17987250 17987466 -101757432 - AluJb SINE Alu -92 220 1 213 264 14 56 chr13 17987966 17988038 -101756860 - L2 LINE L2 -6 3266 3198 2043 92 16 33 chr13 17988052 17988356 -101756542 + AluSc SINE Alu 1 299 -10 1735 86 117 52 chr13 17988808 17988854 -101756044 - L1MA2 LINE L1 -6 6298 6256 1804 141 0 0 chr13 17988854 17989116 -101755782 - AluSx SINE Alu -8 304 43 1735 86 117 52 chr13 17989116 17989393 -101755505 - L1MA2 LINE L1 -48 6256 5954 668 292 107 0 chr13 17989458 17989691 -101755207 + L2 LINE L2 2523 2780 -534 325 250 29 59 chr13 17989694 17989830 -101755068 + L2 LINE L2 3182 3313 0 476 333 52 26 chr13 17989854 17990085 -101754813 + L2 LINE L2 2823 3059 -254 422 120 13 0 chr13 17990603 17990678 -101754220 + (TG)n Simple_repeat Simple_repeat 1 76 0 1884 159 3 20 chr13 17990678 17990974 -101753924 - AluJo SINE Alu -21 291 1 250 241 38 38 chr13 17990980 17991059 -101753839 + L2 LINE L2 3186 3264 -8 204 272 49 25 chr13 17991084 17991165 -101753733 + MIR SINE MIR 47 129 -133 1756 144 4 14 chr13 17991169 17991446 -101753452 - AluJb SINE Alu 0 312 39 822 202 31 40 chr13 17991448 17991671 -101753227 - MLT1D LTR MaLR -283 222 2 1420 154 75 26 chr13 17991825 17991952 -101752946 + AluJb SINE Alu 1 120 -192 189 0 0 0 chr13 17991952 17991973 -101752925 + (TAAA)n Simple_repeat Simple_repeat 1 21 0 1420 154 75 26 chr13 17991973 17992112 -101752786 + AluJb SINE Alu 120 280 -32 885 104 0 22 chr13 17993753 17993887 -101751011 + FLAM_C SINE Alu 1 131 -2 2056 107 21 17 chr13 17994053 17994343 -101750555 - AluSx SINE Alu -21 291 1 25 23 0 23 chr13 17994374 17994399 -101750499 + AT_rich Low_complexity Low_complexity 1 26 -16 1570 190 0 40 chr13 17994399 17994699 -101750199 - AluJo SINE Alu -24 288 1 25 23 0 23 chr13 17994699 17994716 -101750182 + AT_rich Low_complexity Low_complexity 26 42 0 284 233 27 0 chr13 17994779 17994852 -101750046 - L1MA10 LINE L1 0 6334 6260 31 0 0 0 chr13 17994906 17994937 -101749961 + AT_rich Low_complexity Low_complexity 1 31 0 1523 153 120 7 chr13 17994959 17995233 -101749665 - AluSg1 SINE Alu -4 305 1 1078 178 28 37 chr13 17995345 17995559 -101749339 + AluJb SINE Alu 85 296 -16 1640 180 0 48 chr13 17995854 17995999 -101748899 + AluJo SINE Alu 2 126 -186 2014 116 34 0 chr13 17995999 17996291 -101748607 + AluSx SINE Alu 1 302 -10 1640 180 0 48 chr13 17996291 17996456 -101748442 + AluJo SINE Alu 126 297 -15 437 239 0 18 chr13 17996480 17996593 -101748305 + FAM SINE Alu 41 151 -34 407 197 0 0 chr13 17996850 17996926 -101747972 - L1ME LINE L1 -437 5684 5609 210 118 0 0 chr13 17997061 17997095 -101747803 + (TG)n Simple_repeat Simple_repeat 2 35 0 227 256 47 12 chr13 17997097 17997183 -101747715 - L1ME LINE L1 -507 5614 5526 13410 126 85 16 chr13 17998747 17999365 -101745533 + Tigger1 DNA MER2_type 1 575 -1843 1628 174 24 17 chr13 17999365 17999652 -101745246 - AluJb SINE Alu -23 289 1 13410 126 85 16 chr13 17999652 18000664 -101744234 + Tigger1 DNA MER2_type 575 1834 -584 2019 152 7 0 chr13 18000664 18000967 -101743931 + AluSx SINE Alu 1 305 -7 13410 126 85 16 chr13 18000967 18001596 -101743302 + Tigger1 DNA MER2_type 1834 2418 0 358 254 182 22 chr13 18001849 18002030 -101742868 - MIR SINE MIR -2 260 51 648 155 105 33 chr13 18002051 18002232 -101742666 - L1MA8 LINE L1 -3 6288 6095 2054 128 0 49 chr13 18003176 18003503 -101741395 - AluSx SINE Alu -1 311 1 2274 68 0 4 chr13 18003802 18004108 -101740790 - AluY SINE Alu 0 306 2 1748 179 3 10 chr13 18005502 18005803 -101739095 + AluJo SINE Alu 1 299 -13 282 164 295 0 chr13 18006283 18006344 -101738554 - Tigger5 DNA MER2_type -2244 79 1 242 224 0 0 chr13 18006381 18006430 -101738468 - Tigger5 DNA MER2_type -17 2306 2258 * 405 188 52 31 chr13 18006411 18006507 -101738391 + Tigger5 DNA MER2_type 2226 2323 0 2310 86 0 3 chr13 18006697 18006988 -101737910 - AluSq SINE Alu -20 293 4 247 211 28 28 chr13 18007016 18007087 -101737811 - L1 LINE L1 -3324 2822 2752 382 266 62 76 chr13 18007127 18007175 -101737723 - L1 LINE L1 -2227 3919 3872 2128 127 3 0 chr13 18007175 18007475 -101737423 - AluSx SINE Alu -11 301 1 382 266 62 76 chr13 18007475 18007502 -101737396 - L1 LINE L1 -2274 3872 3846 914 204 90 75 chr13 18007502 18007686 -101737212 + MER44D DNA MER2_type 2 182 -2309 2002 145 0 3 chr13 18007686 18007982 -101736916 - AluSx SINE Alu -14 298 4 914 204 90 75 chr13 18007982 18008130 -101736768 + MER44D DNA MER2_type 182 609 0 382 266 62 76 chr13 18008130 18008343 -101736555 - L1 LINE L1 -2300 3846 3634 380 275 159 48 chr13 18008349 18008658 -101736240 + L1 LINE L1 2995 3337 -2809 244 290 50 0 chr13 18008834 18008934 -101735964 + L1 LINE L1 3515 3619 -2527 7987 217 67 46 chr13 18008957 18009738 -101735160 - L1MB4 LINE L1 -6 6410 5647 1770 151 6 25 chr13 18009738 18010056 -101734842 - AluSx SINE Alu 0 312 1 7987 217 67 46 chr13 18010056 18010159 -101734739 - L1MB4 LINE L1 -769 5647 5548 2172 118 0 0 chr13 18010159 18010493 -101734405 - AluSg SINE Alu 0 310 1 1391 159 23 0 chr13 18010496 18010760 -101734138 - L1MA5 LINE L1 0 6300 6031 7987 217 67 46 chr13 18010760 18010806 -101734092 - L1MB4 LINE L1 -869 5547 5503 1113 196 35 4 chr13 18010806 18011035 -101733863 - MER46A DNA MER2_type 0 236 1 7987 217 67 46 chr13 18011035 18011120 -101733778 - L1MB4 LINE L1 -913 5503 5421 2117 112 3 22 chr13 18011120 18011297 -101733601 - AluSx SINE Alu -3 309 139 2173 115 3 3 chr13 18011297 18011602 -101733296 - AluSx SINE Alu -5 307 3 2117 112 3 22 chr13 18011602 18011737 -101733161 - AluSx SINE Alu -173 139 3 1907 146 3 14 chr13 18011739 18012034 -101732864 - AluSx SINE Alu -20 292 1 7987 217 67 46 chr13 18012034 18013625 -101731273 - L1MB4 LINE L1 -995 5421 3864 2144 100 0 4 chr13 18013625 18013926 -101730972 - AluSc SINE Alu 0 300 1 7987 217 67 46 chr13 18013926 18014317 -101730581 - L1MB4 LINE L1 -2552 3864 3483 2090 128 17 0 chr13 18014317 18014613 -101730285 - AluSx SINE Alu -9 303 3 7987 217 67 46 chr13 18014613 18016600 -101728298 - L1MB4 LINE L1 -2933 3483 1169 617 270 144 46 chr13 18016616 18016901 -101727997 - L1MDa LINE L1 -5898 642 330 * 1225 226 82 45 chr13 18016897 18017743 -101727155 - L1MDa LINE L1 -4745 1795 749 307 206 211 10 chr13 18017764 18017963 -101726935 + Charlie7 DNA MER1_type 2373 2611 -1 2155 119 3 3 chr13 18018353 18018665 -101726233 + AluSq SINE Alu 2 313 0 191 257 0 0 chr13 18019432 18019467 -101725431 + L2 LINE L2 3259 3293 -20 448 208 52 78 chr13 18019614 18019768 -101725130 - L1MC4 LINE L1 -242 7800 7651 2156 82 41 3 chr13 18019786 18020078 -101724820 - AluSp SINE Alu -10 303 1 311 250 81 32 chr13 18020078 18020202 -101724696 - L1MEc LINE L1 -4956 1586 1457 207 143 0 41 chr13 18020203 18020252 -101724646 + (TATTG)n Simple_repeat Simple_repeat 5 51 0 1847 240 57 111 chr13 18020255 18020535 -101724363 - L1MEc LINE L1 -5202 1623 1329 2445 65 0 0 chr13 18020535 18020829 -101724069 - AluY SINE Alu -17 294 1 1847 240 57 111 chr13 18020829 18021746 -101723152 - L1MEc LINE L1 -5496 1329 491 1321 167 98 0 chr13 18021765 18022052 -101722846 - L1MC4 LINE L1 -422 7620 7306 1060 213 139 18 chr13 18022379 18022774 -101722124 - Charlie4a DNA MER1_type -4 504 62 2224 123 3 0 chr13 18023478 18023787 -101721111 - AluSg SINE Alu 0 310 1 434 139 0 13 chr13 18024956 18025035 -101719863 - FLAM_A SINE Alu -10 132 55 454 163 0 22 chr13 18025086 18025178 -101719720 - AluJ/FLAM SINE Alu -218 94 5 189 0 0 0 chr13 18025197 18025218 -101719680 + (TTG)n Simple_repeat Simple_repeat 1 21 0 1497 129 133 0 chr13 18025226 18025474 -101719424 - MER7A DNA MER2_type -1 345 67 33 25 0 0 chr13 18025598 18025638 -101719260 + AT_rich Low_complexity Low_complexity 1 40 0 542 305 138 27 chr13 18027179 18027513 -101717385 + L3 LINE CR1 1163 1533 -44 1702 179 9 18 chr13 18028096 18028425 -101716473 + MER2 DNA MER2_type 1 326 -19 1480 207 36 25 chr13 18028626 18028984 -101715914 - MLT1A1 LTR MaLR -3 362 1 2035 138 10 0 chr13 18029356 18029647 -101715251 - AluSx SINE Alu -16 296 3 2262 108 0 16 chr13 18029775 18029953 -101714945 - AluSx SINE Alu -2 310 138 2548 57 0 0 chr13 18029953 18030252 -101714646 - AluY SINE Alu -12 299 1 2262 108 0 16 chr13 18030252 18030388 -101714510 - AluSx SINE Alu -174 138 1 28 71 0 0 chr13 18030667 18030723 -101714175 + AT_rich Low_complexity Low_complexity 1 56 0 2195 112 13 0 chr13 18031420 18031725 -101713173 - AluSx SINE Alu -3 309 1 2470 87 0 0 chr13 18032154 18032463 -101712435 - AluSx SINE Alu -3 309 1 21 36 0 0 chr13 18035420 18035448 -101709450 + AT_rich Low_complexity Low_complexity 1 28 0 2258 93 20 3 chr13 18036768 18037069 -101707829 - AluSx SINE Alu -6 306 1 365 97 81 0 chr13 18037302 18037364 -101707534 - L1PA13 LINE L1 -8 6806 6740 2715 108 35 0 chr13 18037411 18037817 -101707081 - L1PA13 LINE L1 -60 6754 6335 18824 188 39 17 chr13 18037817 18039028 -101705870 - L1PA13 LINE L1 -967 5830 4647 2241 96 0 10 chr13 18039028 18039330 -101705568 - AluY SINE Alu -12 299 1 18824 188 39 17 chr13 18039330 18042279 -101702619 - L1PA13 LINE L1 -2150 4647 1506 2025 157 0 0 chr13 18042279 18042578 -101702320 - AluSx SINE Alu -13 299 1 18824 188 39 17 chr13 18042578 18044118 -101700780 - L1PA13 LINE L1 -5291 1506 1 2417 88 0 0 chr13 18044322 18044627 -101700271 + AluSx SINE Alu 1 305 -7 25 51 0 0 chr13 18045365 18045404 -101699494 + AT_rich Low_complexity Low_complexity 1 39 0 1744 161 20 33 chr13 18045514 18045818 -101699080 + AluJo SINE Alu 1 300 -12 1612 203 0 23 chr13 18045821 18046122 -101698776 + AluJo SINE Alu 3 296 -16 243 0 0 0 chr13 18046138 18046165 -101698733 + (TG)n Simple_repeat Simple_repeat 2 28 0 333 250 71 0 chr13 18046165 18046249 -101698649 + L1MC4 LINE L1 6614 6703 -1339 320 298 21 0 chr13 18046181 18046275 -101698623 - L1MC4 LINE L1 -1339 6703 6608 * 31 58 0 0 chr13 18047844 18047896 -101697002 + AT_rich Low_complexity Low_complexity 1 52 0 210 304 43 0 chr13 18048229 18048298 -101696600 + L3 LINE CR1 1459 1530 -47 292 258 250 23 chr13 18049198 18049326 -101695572 + MIR SINE MIR 44 200 -62 24 32 0 0 chr13 18050457 18050488 -101694410 + AT_rich Low_complexity Low_complexity 1 31 0 25 75 0 0 chr13 18051541 18051594 -101693304 + AT_rich Low_complexity Low_complexity 1 53 0 344 261 11 22 chr13 18052830 18052922 -101691976 - MER5B DNA MER1_type -1 177 87 2142 88 34 10 chr13 18052934 18053229 -101691669 + AluSq SINE Alu 1 302 -11 417 244 0 0 chr13 18053738 18053828 -101691070 + MIR SINE MIR 78 167 -95 552 321 74 4 chr13 18053877 18054120 -101690778 + MIR SINE MIR 2 261 -1 337 179 90 13 chr13 18054407 18054485 -101690413 - MIR SINE MIR -110 152 69 658 194 61 92 chr13 18054494 18054690 -101690208 - MER8 DNA MER2_type -1 238 49 2233 177 40 38 chr13 18054768 18055221 -101689677 - MER82 DNA MER2_type 0 653 200 294 314 65 54 chr13 18055799 18056076 -101688822 + Tigger2 DNA MER2_type 1411 1690 -1028 1827 155 34 0 chr13 18056651 18056825 -101688073 - AluSx SINE Alu -5 307 117 249 109 0 0 chr13 18056825 18056871 -101688027 + (TTTA)n Simple_repeat Simple_repeat 2 47 0 1827 155 34 0 chr13 18056871 18056993 -101687905 - AluSx SINE Alu -195 117 1 653 218 56 0 chr13 18057277 18057419 -101687479 - MER82 DNA MER2_type -492 161 12 342 113 25 125 chr13 18059183 18059263 -101685635 + Tigger2 DNA MER2_type 1 72 -2646 253 222 111 0 chr13 18059266 18059320 -101685578 - MER2 DNA MER2_type -4 341 282 * 473 172 192 86 chr13 18059299 18059329 -101685569 - MER8 DNA MER2_type -64 175 150 1823 160 7 0 chr13 18059329 18059610 -101685288 + AluJb SINE Alu 21 303 -9 473 172 192 86 chr13 18059610 18059730 -101685168 - MER8 DNA MER2_type -89 150 9 2289 100 3 0 chr13 18059952 18060252 -101684646 + AluSq SINE Alu 1 301 -12 183 42 0 0 chr13 18061137 18061161 -101683737 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 1826 153 22 0 chr13 18061163 18061438 -101683460 - AluSx SINE Alu -31 281 1 368 191 112 79 chr13 18061706 18061858 -101683040 - MER112 DNA MER1_type -6 254 98 1894 109 0 0 chr13 18062734 18062982 -101681916 + AluJb SINE Alu 59 306 -6 2242 95 11 0 chr13 18063056 18063340 -101681558 + AluSq SINE Alu 3 289 -24 426 92 63 29 chr13 18063340 18063514 -101681384 + (TA)n Simple_repeat Simple_repeat 1 180 0 21 71 0 0 chr13 18064212 18064254 -101680644 + AT_rich Low_complexity Low_complexity 1 42 0 207 281 16 16 chr13 18064254 18064375 -101680523 + (TTA)n Simple_repeat Simple_repeat 2 122 0 1136 191 12 16 chr13 18064814 18065070 -101679828 + L1M4 LINE L1 4947 5201 -945 1318 122 141 53 chr13 18065072 18065335 -101679563 + AluJo SINE Alu 1 286 -26 286 83 0 0 chr13 18065351 18065387 -101679511 + U1 snRNA snRNA 1 36 -129 * 316 166 0 11 chr13 18065368 18065440 -101679458 + Alu SINE Alu 248 300 -2 586 190 17 17 chr13 18065796 18065912 -101678986 - Tigger2 DNA MER2_type 0 2718 2603 * 1939 113 88 105 chr13 18065907 18066315 -101678583 - Tigger2 DNA MER2_type -39 2679 1 24 53 0 0 chr13 18066755 18066793 -101678105 + AT_rich Low_complexity Low_complexity 1 38 0 518 264 64 90 chr13 18067841 18068152 -101676746 + MER46C DNA MER2_type 34 336 -2 1232 228 60 116 chr13 18068651 18069339 -101675559 - L1MDa LINE L1 -1814 4401 3753 2198 89 10 3 chr13 18070072 18070365 -101674533 - AluSc SINE Alu -14 295 1 941 94 106 12 chr13 18070655 18070815 -101674083 - AluSg/x SINE Alu -21 291 117 3222 125 60 2 chr13 18070831 18071386 -101673512 - MER51C LTR ERV1 0 640 1 889 212 38 128 chr13 18071740 18071794 -101673104 - L1MDa LINE L1 -2467 3748 3691 2214 113 0 3 chr13 18071794 18072095 -101672803 + AluSq SINE Alu 1 300 -13 889 212 38 128 chr13 18072095 18072431 -101672467 - L1MDa LINE L1 -2524 3691 3393 2112 141 3 6 chr13 18072451 18072764 -101672134 - AluSx SINE Alu 0 312 1 517 178 10 10 chr13 18072791 18072892 -101672006 - MER58 DNA MER1_type 0 2420 2320 470 202 148 5 chr13 18073034 18073237 -101671661 - L1MDa LINE L1 -2982 3233 3002 21 36 0 0 chr13 18073278 18073306 -101671592 + AT_rich Low_complexity Low_complexity 1 28 0 2136 137 3 8 chr13 18073396 18073753 -101671145 - L1MB3 LINE L1 -3 6180 5826 378 0 0 0 chr13 18073753 18073795 -101671103 + (TG)n Simple_repeat Simple_repeat 1 42 0 1613 181 0 17 chr13 18073806 18074093 -101670805 - AluJb SINE Alu -30 282 1 2518 51 0 0 chr13 18074100 18074394 -101670504 - AluY SINE Alu -17 294 1 319 164 30 0 chr13 18074456 18074523 -101670375 + L1MB2 LINE L1 6096 6164 -7 1724 122 17 51 chr13 18075227 18075523 -101669375 - AluSx SINE Alu -5 307 22 2186 50 90 7 chr13 18075720 18075999 -101668899 - AluY SINE Alu -9 302 1 22 0 0 0 chr13 18076132 18076154 -101668744 + AT_rich Low_complexity Low_complexity 1 22 0 536 210 206 0 chr13 18076548 18076781 -101668117 + MER33 DNA MER1_type 44 324 0 23 0 0 0 chr13 18076884 18076907 -101667991 + AT_rich Low_complexity Low_complexity 1 23 0 2462 79 3 0 chr13 18076919 18077224 -101667674 + AluSc SINE Alu 1 306 -3 365 203 26 123 chr13 18078232 18078371 -101666527 - L1MDa LINE L1 -3828 2387 2264 1913 143 7 7 chr13 18078371 18078665 -101666233 - AluJb SINE Alu -14 298 5 365 203 26 123 chr13 18078665 18078701 -101666197 - L1MDa LINE L1 -3951 2264 2226 303 253 55 22 chr13 18078762 18078853 -101666045 - MER58 DNA MER1_type -2151 269 176 232 250 19 0 chr13 18078850 18078902 -101665996 - MER58 DNA MER1_type -158 57 5 * 956 215 105 12 chr13 18078913 18079238 -101665660 - L1MDa LINE L1 -4139 2257 1903 21 36 0 0 chr13 18080615 18080643 -101664255 + AT_rich Low_complexity Low_complexity 1 28 0 2325 90 3 10 chr13 18080930 18081240 -101663658 - AluSp SINE Alu -5 308 1 1842 154 0 10 chr13 18081896 18082188 -101662710 - AluJo SINE Alu -20 292 4 713 226 53 11 chr13 18082229 18082419 -101662479 - MER58A DNA MER1_type 0 224 27 1542 142 63 79 chr13 18082782 18083149 -101661749 - MER46B DNA MER2_type 0 236 1 428 204 76 52 chr13 18083328 18083500 -101661398 + MER104 DNA MER2_type 2 177 -3 21 0 0 0 chr13 18084107 18084128 -101660770 + AT_rich Low_complexity Low_complexity 1 21 0 203 27 0 81 chr13 18084373 18084410 -101660488 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 312 207 73 0 chr13 18084601 18084683 -101660215 + L1MC4 LINE L1 1982 6983 -1339 592 178 124 0 chr13 18088496 18088625 -101656273 - MER46C DNA MER2_type -5 333 189 302 165 38 25 chr13 18088699 18088778 -101656120 - MER46C DNA MER2_type -257 81 2 229 272 211 26 chr13 18089099 18089213 -101655685 - L2 LINE L2 0 3272 3138 392 205 13 0 chr13 18089577 18089655 -101655243 + L2 LINE L2 3231 3309 -4 190 333 38 38 chr13 18089913 18090018 -101654880 - MER5A DNA MER1_type -28 161 57 364 224 197 48 chr13 18090510 18090657 -101654241 - MIR SINE MIR -88 174 6 7383 199 104 56 chr13 18090982 18091299 -101653599 - Cheshire DNA MER1_type 0 2420 2120 520 69 0 0 chr13 18091299 18091371 -101653527 + Alu SINE Alu 1 72 -237 7383 199 104 56 chr13 18091371 18093291 -101651607 - Cheshire DNA MER1_type -300 2120 2 2147 120 0 0 chr13 18093339 18093639 -101651259 - AluSx SINE Alu -12 300 1 269 183 33 0 chr13 18093650 18093710 -101651188 + L2 LINE L2 1411 1472 -1842 320 282 137 0 chr13 18093710 18093827 -101651071 + L2 LINE L2 1646 1778 -1536 285 307 123 9 chr13 18095259 18095373 -101649525 + L2 LINE L2 3145 3271 -1 379 345 103 5 chr13 18096412 18096606 -101648292 + MIR SINE MIR 34 246 -16 201 74 0 0 chr13 18096677 18096704 -101648194 + (TCCA)n Simple_repeat Simple_repeat 4 30 0 1531 219 41 24 chr13 18096853 18097246 -101647652 - MSTD LTR MaLR -2 394 3 366 23 0 0 chr13 18097779 18097822 -101647076 + (CA)n Simple_repeat Simple_repeat 2 44 0 28 0 0 0 chr13 18098056 18098084 -101646814 + AT_rich Low_complexity Low_complexity 1 28 0 867 112 0 14 chr13 18098709 18098852 -101646046 - L1MB3 LINE L1 -217 5966 5826 414 0 0 0 chr13 18098852 18098898 -101646000 + (TG)n Simple_repeat Simple_repeat 1 46 0 1611 181 0 17 chr13 18098913 18099200 -101645698 - AluJb SINE Alu -30 282 1 2514 51 0 0 chr13 18099207 18099501 -101645397 - AluY SINE Alu -17 294 1 312 164 30 0 chr13 18099563 18099630 -101645268 + L1MB2 LINE L1 6096 6164 -7 1944 110 22 54 chr13 18100337 18100654 -101644244 - AluSx SINE Alu 0 312 6 1654 114 30 11 chr13 18101489 18101753 -101643145 - AluSx SINE Alu -1 311 43 372 255 235 0 chr13 18101893 18102046 -101642852 - MIR SINE MIR -2 260 72 2182 54 90 7 chr13 18102503 18102782 -101642116 - AluY SINE Alu -9 302 1 22 0 0 0 chr13 18102915 18102937 -101641961 + AT_rich Low_complexity Low_complexity 1 22 0 478 210 206 0 chr13 18103331 18103564 -101641334 + MER33 DNA MER1_type 44 324 0 23 0 0 0 chr13 18103667 18103690 -101641208 + AT_rich Low_complexity Low_complexity 1 23 0 2488 79 3 0 chr13 18103702 18104007 -101640891 + AluSc SINE Alu 1 306 -3 335 246 43 29 chr13 18105016 18105154 -101639744 - L1MEc LINE L1 -3828 2387 2248 1925 143 7 7 chr13 18105155 18105449 -101639449 - AluJb SINE Alu -14 298 5 276 253 63 0 chr13 18105558 18105637 -101639261 - MER58 DNA MER1_type -2161 259 176 875 215 105 12 chr13 18105697 18106022 -101638876 - L1MEc LINE L1 -4139 2257 1903 21 36 0 0 chr13 18107400 18107428 -101637470 + AT_rich Low_complexity Low_complexity 1 28 0 2344 90 3 10 chr13 18107715 18108025 -101636873 - AluSp SINE Alu -5 308 1 1853 154 0 10 chr13 18108681 18108973 -101635925 - AluJo SINE Alu -20 292 4 641 216 58 16 chr13 18109014 18109204 -101635694 - MER58A DNA MER1_type 0 224 27 1518 142 63 79 chr13 18109567 18109934 -101634964 - MER46B DNA MER2_type 0 236 1 423 204 76 52 chr13 18110113 18110285 -101634613 + MER104 DNA MER2_type 2 177 -3 21 0 0 0 chr13 18110892 18110913 -101633985 + AT_rich Low_complexity Low_complexity 1 21 0 203 27 0 81 chr13 18111158 18111195 -101633703 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 312 207 73 0 chr13 18111386 18111468 -101633430 + L1MC4 LINE L1 1982 6983 -1339 592 178 124 0 chr13 18115280 18115409 -101629489 - MER46C DNA MER2_type -5 333 189 302 165 38 25 chr13 18115483 18115562 -101629336 - MER46C DNA MER2_type -257 81 2 229 272 211 26 chr13 18115883 18115997 -101628901 - L2 LINE L2 0 3272 3138 392 205 13 0 chr13 18116357 18116435 -101628463 + L2 LINE L2 3231 3309 -4 202 324 38 38 chr13 18116693 18116798 -101628100 - MER5A DNA MER1_type -28 161 57 364 224 197 48 chr13 18117290 18117437 -101627461 - MIR SINE MIR -88 174 6 7366 199 104 56 chr13 18117762 18118079 -101626819 - Cheshire DNA MER1_type 0 2420 2120 520 69 0 0 chr13 18118079 18118151 -101626747 + Alu SINE Alu 1 72 -238 7366 199 104 56 chr13 18118151 18120071 -101624827 - Cheshire DNA MER1_type -300 2120 2 2134 120 0 0 chr13 18120119 18120419 -101624479 - AluSx SINE Alu -12 300 1 269 183 33 0 chr13 18120430 18120490 -101624408 + L2 LINE L2 1411 1472 -1842 1310 271 127 28 chr13 18120490 18120735 -101624163 + L2 LINE L2 1646 1865 -1449 1817 137 48 17 chr13 18120735 18121028 -101623870 - AluJb SINE Alu -10 302 1 1310 271 127 28 chr13 18121028 18121317 -101623581 + L2 LINE L2 1865 2233 -1081 215 176 98 0 chr13 18121377 18121428 -101623470 - MIR SINE MIR -44 218 163 257 217 17 0 chr13 18121429 18121489 -101623409 - MER58A DNA MER1_type 0 224 164 2853 103 55 118 chr13 18121495 18121817 -101623081 - LTR12 LTR ERV1 -132 582 316 189 0 0 0 chr13 18121817 18121838 -101623060 + (TGGGGG)n Simple_repeat Simple_repeat 4 24 0 2853 103 55 118 chr13 18121838 18122136 -101622762 - LTR12 LTR ERV1 -398 316 1 603 166 50 22 chr13 18122143 18122282 -101622616 - MER58C DNA MER1_type -72 143 1 576 216 65 7 chr13 18122305 18122444 -101622454 - MIR SINE MIR -108 154 8 2351 256 152 42 chr13 18122497 18123889 -101621009 + HAL1 LINE L1 249 1794 -713 719 189 18 6 chr13 18123933 18124097 -101620801 + LTR41 LTR ERVL 5 170 -603 479 204 53 29 chr13 18124258 18124465 -101620433 + LTR41 LTR ERVL 566 795 0 296 252 60 66 chr13 18124465 18124783 -101620115 + HAL1 LINE L1 2135 2450 -57 572 111 0 11 chr13 18124799 18124889 -101620009 - Tigger7 DNA MER2_type -7 2484 2396 * 806 222 5 25 chr13 18124887 18125090 -101619808 - Tigger7 DNA MER2_type -466 267 69 2651 139 19 24 chr13 18125178 18125406 -101619492 + L1MB3 LINE L1 5710 5937 -246 2040 137 0 0 chr13 18125406 18125706 -101619192 + AluSx SINE Alu 1 300 -12 2651 139 19 24 chr13 18125706 18125943 -101618955 + L1MB3 LINE L1 5937 6173 -10 25 0 0 0 chr13 18126088 18126113 -101618785 + AT_rich Low_complexity Low_complexity 1 25 0 216 254 175 35 chr13 18126259 18126373 -101618525 - L2 LINE L2 -5 3267 3138 943 176 77 31 chr13 18126876 18127098 -101617800 - MSTD LTR MaLR 0 396 165 1863 142 4 0 chr13 18127926 18128193 -101616705 - AluSx SINE Alu -44 268 1 21 36 0 0 chr13 18128426 18128454 -101616444 + AT_rich Low_complexity Low_complexity 1 28 0 1651 138 28 28 chr13 18128567 18128850 -101616048 - AluJo SINE Alu -29 283 1 233 224 0 0 chr13 18130683 18130732 -101614166 - L3 LINE CR1 -1 1576 1528 565 285 18 35 chr13 18130741 18130810 -101614088 + MER58A DNA MER1_type 1 70 -2350 2317 101 0 0 chr13 18130810 18131107 -101613791 + AluSx SINE Alu 1 297 -15 565 285 18 35 chr13 18131107 18131265 -101613633 + MER58A DNA MER1_type 70 224 0 904 233 134 27 chr13 18132056 18132460 -101612438 + L1ME4a LINE L1 5561 6007 -114 835 279 69 47 chr13 18132549 18132779 -101612119 - L1MEd LINE L1 -4869 1250 1026 381 22 0 0 chr13 18132779 18132825 -101612073 + (TG)n Simple_repeat Simple_repeat 2 47 0 2197 123 0 3 chr13 18132833 18133134 -101611764 - AluSx SINE Alu -12 300 1 835 279 69 47 chr13 18133134 18133403 -101611495 - L1MEd LINE L1 -5099 1020 731 301 375 125 0 chr13 18133538 18133722 -101611176 - L1MEd LINE L1 -5453 666 460 967 256 60 78 chr13 18133892 18134408 -101610490 + L2 LINE L2 2419 2925 -389 2247 107 0 16 chr13 18134483 18134791 -101610107 - AluSg1 SINE Alu -6 303 1 1885 159 7 13 chr13 18134794 18135095 -101609803 - AluJo SINE Alu -7 305 7 1200 251 176 12 chr13 18135171 18135349 -101609549 + L1ME1 LINE L1 5516 5663 -503 973 266 131 38 chr13 18135349 18135822 -101609076 + MLT2B1 LTR ERVL 1 517 -3 1200 251 176 12 chr13 18135822 18136142 -101608756 + L1ME1 LINE L1 5663 6096 -70 234 191 0 0 chr13 18136160 18136207 -101608691 + A-rich Low_complexity Low_complexity 1 47 0 899 172 35 7 chr13 18136212 18136441 -101608457 + AluJb SINE Alu 1 302 -10 1770 147 25 3 chr13 18136442 18136762 -101608136 + AluJb SINE Alu 1 312 0 201 39 0 0 chr13 18136843 18136869 -101608029 + (TTCA)n Simple_repeat Simple_repeat 3 28 0 225 337 69 20 chr13 18137013 18137114 -101607784 - MIR SINE MIR -55 153 48 216 0 0 0 chr13 18137126 18137150 -101607748 + (TTG)n Simple_repeat Simple_repeat 2 25 0 2277 113 0 0 chr13 18137152 18137445 -101607453 - AluSq SINE Alu -20 293 1 252 333 11 0 chr13 18137591 18137678 -101607220 - MIR SINE MIR -117 145 58 254 319 80 35 chr13 18137716 18137829 -101607069 - MIR SINE MIR -55 207 90 236 245 0 0 chr13 18137937 18137986 -101606912 + GA-rich Low_complexity Low_complexity 2 50 0 743 152 49 98 chr13 18138345 18138549 -101606349 + MLT1D LTR MaLR 1 194 -311 446 262 0 0 chr13 18138571 18138674 -101606224 + MLT1D LTR MaLR 387 489 -16 329 220 200 0 chr13 18138958 18139058 -101605840 - MER69 DNA AcHobo -2 2524 2405 350 241 86 0 chr13 18139155 18139271 -101605627 - MER69 DNA AcHobo -2383 143 18 2222 116 0 28 chr13 18139367 18139687 -101605211 + AluSx SINE Alu 1 311 -1 304 190 0 35 chr13 18139694 18139752 -101605146 - L1MC4 LINE L1 -1339 6703 6648 2343 116 0 0 chr13 18140049 18140359 -101604539 - AluSx SINE Alu -2 310 1 1336 173 110 18 chr13 18140478 18140750 -101604148 + AluSg SINE Alu 12 308 -2 917 204 0 17 chr13 18141191 18141367 -101603531 - FRAM SINE Alu -11 165 1 24 53 0 0 chr13 18141480 18141518 -101603380 + AT_rich Low_complexity Low_complexity 1 38 0 1449 158 39 56 chr13 18141956 18142068 -101602830 + AluJb SINE Alu 15 127 -185 197 0 71 0 chr13 18142068 18142096 -101602802 + (TAAAA)n Simple_repeat Simple_repeat 5 34 0 1449 158 39 56 chr13 18142096 18142267 -101602631 + AluJb SINE Alu 127 293 -19 2130 89 0 71 chr13 18142470 18142795 -101602103 - AluSx SINE Alu -10 302 1 222 297 22 66 chr13 18143524 18143706 -101601192 + C-rich Low_complexity Low_complexity 1 174 0 773 165 41 47 chr13 18144086 18144235 -101600663 + AluJb SINE Alu 137 286 -26 387 0 0 0 chr13 18144235 18144278 -101600620 + (CA)n Simple_repeat Simple_repeat 2 44 0 773 165 41 47 chr13 18144278 18144298 -101600600 + AluJb SINE Alu 286 305 -7 434 264 110 28 chr13 18144465 18144647 -101600251 + L2 LINE L2 3117 3313 0 313 233 56 33 chr13 18144658 18144748 -101600150 + MIR SINE MIR 58 149 -113 1071 153 98 31 chr13 18144749 18145004 -101599894 + LTR54B LTR ERV1 1 272 -226 3323 82 68 78 chr13 18145005 18145515 -101599383 - MER51A LTR ERV1 -8 626 122 2420 88 0 0 chr13 18145515 18145822 -101599076 - AluSq SINE Alu -6 307 1 3323 82 68 78 chr13 18145822 18145943 -101598955 - MER51A LTR ERV1 -512 122 1 605 248 59 5 chr13 18145945 18146147 -101598751 + LTR54B LTR ERV1 281 493 -5 525 238 63 7 chr13 18146318 18146461 -101598437 - MER21B LTR ERV1 -615 248 98 507 221 9 38 chr13 18146436 18146595 -101598303 - MER21B LTR ERV1 -410 195 12 * 820 161 19 6 chr13 18146600 18146762 -101598136 - L1M3 LINE L1 -714 5466 5303 1115 70 0 0 chr13 18146768 18146897 -101598001 + AluSq/x SINE Alu 7 135 -178 2190 123 0 7 chr13 18146897 18147207 -101597691 + AluSc SINE Alu 1 308 -1 1466 206 79 21 chr13 18147239 18147549 -101597349 - L1 LINE L1 -833 5313 4987 2009 107 68 0 chr13 18147549 18147829 -101597069 - AluSx SINE Alu -13 299 1 1466 206 79 21 chr13 18147829 18147956 -101596942 - L1 LINE L1 -1159 4987 4869 258 217 67 0 chr13 18147956 18148016 -101596882 + L2 LINE L2 3238 3301 -12 196 337 63 21 chr13 18148046 18148141 -101596757 + MIR3 SINE MIR 110 208 0 2066 98 19 63 chr13 18148476 18148792 -101596106 - AluSx SINE Alu -10 302 1 539 278 60 56 chr13 18149105 18149339 -101595559 - L2 LINE L2 0 3313 3079 2323 112 3 3 chr13 18149362 18149674 -101595224 + AluSx SINE Alu 1 312 0 186 133 0 0 chr13 18149736 18149766 -101595132 + (TTCA)n Simple_repeat Simple_repeat 2 31 0 249 220 0 0 chr13 18149766 18149816 -101595082 - L2 LINE L2 0 3313 3264 540 265 177 32 chr13 18150151 18150400 -101594498 + L3 LINE CR1 621 905 -672 183 217 43 0 chr13 18150471 18150517 -101594381 + L3 LINE CR1 902 949 -628 680 225 174 34 chr13 18150562 18150855 -101594043 + L1MC4a LINE L1 7062 7395 -413 2057 105 0 44 chr13 18150973 18151291 -101593607 - AluSx SINE Alu 0 305 1 293 222 16 0 chr13 18151291 18151354 -101593544 + MER5A DNA MER1_type 123 186 -3 1586 145 47 34 chr13 18151932 18152228 -101592670 - AluJo SINE Alu 0 312 13 21 57 0 0 chr13 18152830 18152865 -101592033 + GC_rich Low_complexity Low_complexity 1 35 0 510 264 25 12 chr13 18153212 18153375 -101591523 + MLT1D LTR MaLR 32 196 -309 312 337 10 10 chr13 18153793 18153891 -101591007 - L1ME1 LINE L1 -5 6161 6064 2435 49 0 3 chr13 18154019 18154333 -101590565 + AluSg SINE Alu 1 313 0 291 177 0 0 chr13 18154458 18154520 -101590378 + (CA)n Simple_repeat Simple_repeat 2 63 0 455 251 8 0 chr13 18154532 18154804 -101590094 + (CA)n Simple_repeat Simple_repeat 1 274 0 219 212 0 0 chr13 18154837 18154922 -101589976 + (CA)n Simple_repeat Simple_repeat 2 86 0 530 199 0 11 chr13 18154951 18154969 -101589929 + (CA)n Simple_repeat Simple_repeat 2 19 -161 2132 121 47 44 chr13 18154969 18155332 -101589566 - THE1B LTR MaLR 0 364 1 530 199 0 11 chr13 18155332 18155494 -101589404 + (CA)n Simple_repeat Simple_repeat 19 180 0 501 228 0 0 chr13 18155521 18155688 -101589210 + (CA)n Simple_repeat Simple_repeat 2 168 0 198 0 0 0 chr13 18156492 18156514 -101588384 + (TTCA)n Simple_repeat Simple_repeat 1 22 0 195 260 65 26 chr13 18156515 18156592 -101588306 - L2 LINE L2 -14 3299 3220 1316 127 23 0 chr13 18156746 18156966 -101587932 - MER50 LTR ERV1 -503 231 7 28 48 0 0 chr13 18157373 18157415 -101587483 + AT_rich Low_complexity Low_complexity 1 42 0 2180 150 92 20 chr13 18157415 18157874 -101587024 - L1MB3 LINE L1 -2 6181 5690 390 207 117 18 chr13 18158082 18158193 -101586705 - MIR SINE MIR -111 151 30 2187 103 3 3 chr13 18158698 18159017 -101585881 - AluSc SINE Alu 0 309 1 2098 122 3 14 chr13 18159017 18159313 -101585585 - AluJb SINE Alu -19 293 1 21 0 0 0 chr13 18159316 18159337 -101585561 + AT_rich Low_complexity Low_complexity 1 21 0 2289 159 18 0 chr13 18159828 18160218 -101584680 - L1MB3 LINE L1 -3 6180 5784 1431 139 58 95 chr13 18160220 18160375 -101584523 - AluJo SINE Alu -17 295 136 2436 95 0 13 chr13 18160375 18160692 -101584206 - AluSq SINE Alu 0 313 1 2436 75 3 0 chr13 18160697 18160990 -101583908 - AluSq SINE Alu -19 294 1 1431 139 58 95 chr13 18160990 18161016 -101583882 - AluJo SINE Alu -180 132 107 189 0 0 0 chr13 18161016 18161037 -101583861 + (TTA)n Simple_repeat Simple_repeat 2 22 0 1431 139 58 95 chr13 18161037 18161142 -101583756 - AluJo SINE Alu -205 107 13 257 285 179 66 chr13 18161250 18161401 -101583497 - MIR SINE MIR -12 250 83 1180 130 4 100 chr13 18161845 18162084 -101582814 - AluJo SINE Alu -17 295 80 442 147 54 116 chr13 18164694 18164823 -101580075 + MER105 DNA DNA 29 149 -55 225 260 0 0 chr13 18167596 18167646 -101577252 + CT-rich Low_complexity Low_complexity 4 53 0 449 207 82 67 chr13 18168346 18168554 -101576344 + MER113 DNA MER1_type? 7 217 -304 559 245 130 10 chr13 18168663 18168863 -101576035 + MER113 DNA MER1_type? 257 480 -41 2080 131 0 3 chr13 18169561 18169851 -101575047 + AluSx SINE Alu 1 289 -23 25 0 0 0 chr13 18169851 18169876 -101575022 + AT_rich Low_complexity Low_complexity 1 25 0 253 203 31 16 chr13 18171392 18171456 -101573442 + L1ME4a LINE L1 5615 5679 -442 287 302 114 48 chr13 18171649 18172026 -101572872 + MLT1J LTR MaLR 110 511 0 411 235 176 20 chr13 18172068 18172323 -101572575 + L1ME4a LINE L1 5773 6067 -54 2026 153 3 7 chr13 18172913 18173221 -101571677 - AluJo SINE Alu -5 307 1 1665 188 31 0 chr13 18173879 18174167 -101570731 + AluJo SINE Alu 6 302 -10 211 256 0 0 chr13 18174488 18174531 -101570367 + L2 LINE L2 3271 3313 0 261 0 0 0 chr13 18175035 18175064 -101569834 + (TG)n Simple_repeat Simple_repeat 1 29 0 250 265 364 20 chr13 18176282 18176780 -101568118 - L2 LINE L2 -337 2977 2309 1974 143 17 0 chr13 18177055 18177342 -101567556 - AluSx SINE Alu -20 292 1 4091 54 0 0 chr13 18177959 18178457 -101566441 + L1PA5 LINE L1 5656 6153 -1 317 321 55 36 chr13 18178693 18178858 -101566040 - L1M4 LINE L1 -1410 4736 4569 470 267 158 39 chr13 18178973 18179333 -101565565 - L1M4 LINE L1 -1717 4429 4027 1853 166 0 27 chr13 18179521 18179816 -101565082 - AluJo SINE Alu -20 292 6 307 280 155 7 chr13 18180045 18180316 -101564582 - L1M4 LINE L1 -2639 3507 3197 243 0 0 0 chr13 18180963 18180990 -101563908 + (TTTTA)n Simple_repeat Simple_repeat 5 31 0 1636 148 32 46 chr13 18180990 18181274 -101563624 - AluSx SINE Alu -32 280 1 432 308 70 29 chr13 18182083 18182255 -101562643 - MIR3 SINE MIR 0 208 30 1424 162 4 29 chr13 18182561 18182802 -101562096 - AluJo SINE Alu -77 235 1 2240 89 26 26 chr13 18183292 18183605 -101561293 + AluSq SINE Alu 1 313 0 263 318 103 32 chr13 18183827 18183953 -101560945 - L2 LINE L2 -15 3257 3123 277 111 0 0 chr13 18184015 18184051 -101560847 + AluY SINE Alu 140 175 -126 794 31 0 0 chr13 18184051 18184149 -101560749 + AluSg/x SINE Alu 213 310 0 237 235 20 29 chr13 18185464 18185566 -101559332 + (CCCCG)n Simple_repeat Simple_repeat 5 105 0 47 33 0 0 chr13 18187263 18187324 -101557574 + AT_rich Low_complexity Low_complexity 1 61 0 2768 143 40 6 chr13 18187327 18187822 -101557076 + L1MB3 LINE L1 5671 6182 -1 183 222 0 0 chr13 18188305 18188341 -101556557 + L2 LINE L2 3271 3306 -7 2165 105 0 10 chr13 18188501 18188815 -101556083 + AluSx SINE Alu 1 311 -1 2316 88 0 19 chr13 18188929 18189247 -101555651 + AluSq SINE Alu 1 312 -1 1513 131 20 81 chr13 18189445 18189783 -101555115 + AluJb SINE Alu 4 323 0 1748 134 76 0 chr13 18190695 18190985 -101553913 + AluJb SINE Alu 1 312 0 283 314 6 45 chr13 18191258 18191414 -101553484 - MIR SINE MIR -44 218 69 1672 171 3 13 chr13 18191908 18192218 -101552680 + AluJo SINE Alu 5 311 -1 198 342 70 44 chr13 18192897 18193055 -101551843 + L2 LINE L2 319 480 -2834 276 283 58 96 chr13 18193271 18193511 -101551387 + L3 LINE CR1 1008 1238 -339 794 208 134 19 chr13 18193518 18193734 -101551164 - MIR SINE MIR -12 250 10 202 321 0 0 chr13 18193734 18193790 -101551108 + (TG)n Simple_repeat Simple_repeat 1 56 0 212 342 49 71 chr13 18193790 18194056 -101550842 + L3 LINE CR1 1274 1533 -44 1531 148 32 0 chr13 18194424 18194674 -101550224 - AluJb SINE Alu -54 258 1 1936 156 47 0 chr13 18194793 18195113 -101549785 + MER7A DNA MER2_type 14 346 0 440 251 106 58 chr13 18195358 18195565 -101549333 + MIR SINE MIR 46 262 0 377 279 62 37 chr13 18196695 18196856 -101548042 - MER104 DNA Tc2 -3 177 13 3101 208 18 15 chr13 18197209 18198156 -101546742 + L1M3 LINE L1 4629 5583 -600 310 239 33 43 chr13 18200418 18200536 -101544362 + MIR SINE MIR 70 187 -68 1654 162 13 33 chr13 18203021 18203323 -101541575 - AluJo SINE Alu -16 296 1 942 167 0 6 chr13 18205280 18205448 -101539450 - AluJb SINE Alu -17 295 129 2952 132 29 2 chr13 18205907 18206384 -101538514 - L1MB3 LINE L1 -19 6164 5675 945 302 143 8 chr13 18207586 18207950 -101536948 + L3 LINE CR1 436 848 -729 287 106 0 0 chr13 18207968 18208015 -101536883 + Alu SINE Alu 253 299 -1 2023 136 0 7 chr13 18208176 18208484 -101536414 - AluSx SINE Alu -6 306 1 356 276 138 45 chr13 18208497 18208765 -101536133 + L1ME4a LINE L1 5826 6118 -3 260 291 90 8 chr13 18209067 18209201 -101535697 + L3 LINE CR1 1177 1321 -256 229 250 171 0 chr13 18209553 18209629 -101535269 + L2 LINE L2 3184 3272 0 241 247 55 103 chr13 18209797 18209943 -101534955 + MIR SINE MIR 76 214 -48 227 241 175 36 chr13 18210271 18210408 -101534490 - MIR SINE MIR -15 247 92 1660 183 7 13 chr13 18210862 18211168 -101533730 - AluJb SINE Alu -8 304 1 1368 169 0 0 chr13 18211527 18211758 -101533140 + AluJb SINE Alu 1 231 -81 22 0 0 0 chr13 18217298 18217320 -101527578 + GC_rich Low_complexity Low_complexity 1 22 0 23 0 0 0 chr13 18217460 18217483 -101527415 + GC_rich Low_complexity Low_complexity 1 23 0 26 30 0 0 chr13 18217678 18217711 -101527187 + GC_rich Low_complexity Low_complexity 1 33 0 21 0 0 0 chr13 18218416 18218437 -101526461 + GC_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr13 18220878 18220899 -101523999 + AT_rich Low_complexity Low_complexity 1 21 0 243 0 0 0 chr13 18222127 18222154 -101522744 + (A)n Simple_repeat Simple_repeat 1 27 0 479 214 28 84 chr13 18222332 18222510 -101522388 - MER112 DNA MER1_type -92 168 1 1313 150 127 29 chr13 18223212 18223519 -101521379 - MER44D DNA MER2_type -2 607 1 612 247 66 29 chr13 18223895 18224138 -101520760 - L1MC4a LINE L1 -1850 5958 5707 232 229 52 0 chr13 18224146 18224242 -101520656 + L1MCc LINE L1 19 119 -6304 242 273 27 64 chr13 18224897 18225007 -101519891 + L1MCc LINE L1 1291 1396 -5027 * 3217 237 63 31 chr13 18224995 18225186 -101519712 + L1MCc LINE L1 3044 3227 -3714 1720 140 45 3 chr13 18225186 18225478 -101519420 + AluSx SINE Alu 1 304 -8 3217 237 63 31 chr13 18225478 18226237 -101518661 + L1MCc LINE L1 3227 4048 -2893 1884 193 11 26 chr13 18226237 18226615 -101518283 - MLT1A2 LTR MaLR -2 372 1 3217 237 63 31 chr13 18226615 18226956 -101517942 + L1MCc LINE L1 4048 4377 -2564 764 264 50 4 chr13 18226975 18227201 -101517697 - L1MC4a LINE L1 -2119 5689 5459 2043 87 45 7 chr13 18227695 18227983 -101516915 - AluSx SINE Alu -13 299 1 326 253 71 82 chr13 18228061 18228231 -101516667 + L1MEd LINE L1 3 170 -5949 21 0 0 0 chr13 18229269 18229290 -101515608 + AT_rich Low_complexity Low_complexity 1 21 0 1831 134 26 10 chr13 18229852 18230159 -101514739 + AluSx SINE Alu 1 312 0 216 0 0 0 chr13 18230263 18230287 -101514611 + (CA)n Simple_repeat Simple_repeat 2 25 0 386 295 77 0 chr13 18230714 18230870 -101514028 - L1MC/D LINE L1 -2053 5755 5588 219 266 94 0 chr13 18231162 18231226 -101513672 + MIR SINE MIR 76 145 -63 2993 37 0 3 chr13 18231766 18232120 -101512778 + L1PA3 LINE L1 5803 6155 0 480 275 38 25 chr13 18232563 18232723 -101512175 + MER5A DNA MER1_type 27 188 -1 2051 105 0 3 chr13 18232775 18233061 -101511837 + AluSq SINE Alu 1 285 -28 1094 115 0 0 chr13 18232905 18233061 -101511837 + AluSp SINE Alu 130 344 0 311 68 17 17 chr13 18233061 18233120 -101511778 + (TAAAA)n Simple_repeat Simple_repeat 2 180 0 2419 71 0 0 chr13 18233160 18233468 -101511430 + AluY SINE Alu 1 308 -3 187 297 27 54 chr13 18233469 18233543 -101511355 - MER5A DNA MER1_type -55 134 63 1735 157 111 12 chr13 18233580 18233912 -101510986 + MLT1A1 LTR MaLR 1 365 0 282 299 136 38 chr13 18234954 18235299 -101509599 - L2 LINE L2 -4 3268 2890 7338 176 113 113 chr13 18235458 18235538 -101509360 + L1MD1 LINE L1 276 354 -6186 2178 79 3 3 chr13 18235538 18235830 -101509068 + AluSc SINE Alu 1 292 -17 7338 176 113 113 chr13 18235830 18236439 -101508459 + L1MD1 LINE L1 354 961 -5579 2015 125 0 13 chr13 18236439 18236750 -101508148 - AluSq SINE Alu -6 307 1 7338 176 113 113 chr13 18236750 18237433 -101507465 + L1MD1 LINE L1 961 1642 -4898 1381 152 4 61 chr13 18237433 18237696 -101507202 + AluSx SINE Alu 1 248 -64 7338 176 113 113 chr13 18237696 18238899 -101505999 + L1MD1 LINE L1 1642 3126 -3414 2200 200 29 51 chr13 18238921 18239467 -101505431 - MER74A LTR ERVL -24 534 1 1825 215 47 31 chr13 18239467 18242806 -101502092 + L1MD1 LINE L1 3126 6636 0 494 219 83 49 chr13 18242844 18243049 -101501849 + L1MC5 LINE L1 7655 7866 -95 364 266 65 32 chr13 18243092 18243216 -101501682 + MIR SINE MIR 2 129 -133 566 61 24 0 chr13 18243219 18243301 -101501597 + (TTTC)n Simple_repeat Simple_repeat 4 87 0 2263 94 3 0 chr13 18243312 18243620 -101501278 - AluSx SINE Alu -3 309 1 341 213 150 0 chr13 18243622 18243702 -101501196 + MIR SINE MIR 101 192 -70 1295 226 20 33 chr13 18243870 18244176 -101500722 - AluJo SINE Alu 0 302 1 1624 173 19 25 chr13 18244472 18244790 -101500108 - L1MA10 LINE L1 -593 5741 5426 2831 178 21 22 chr13 18244790 18245369 -101499529 + L1MA10 LINE L1 5755 6333 -1 2134 128 0 0 chr13 18245548 18245860 -101499038 + AluSx SINE Alu 1 312 0 360 234 81 27 chr13 18245917 18246028 -101498870 + L1MC5 LINE L1 7662 7778 -183 2205 77 0 13 chr13 18248346 18248644 -101496254 + AluY SINE Alu 1 294 -17 2284 174 31 2 chr13 18249828 18250248 -101494650 - L1MB2 LINE L1 -150 6021 5590 193 323 98 45 chr13 18250281 18250414 -101494484 + L3 LINE CR1 137 276 -1301 221 350 136 14 chr13 18250858 18251072 -101493826 + L3 LINE CR1 1268 1507 -70 2384 68 0 3 chr13 18253136 18253446 -101491452 - AluY SINE Alu -2 309 1 243 0 0 0 chr13 18253786 18253813 -101491085 + (A)n Simple_repeat Simple_repeat 1 27 0 1601 141 40 59 chr13 18253813 18254117 -101490781 - AluSx SINE Alu -14 298 1 21 0 0 0 chr13 18254455 18254476 -101490422 + GC_rich Low_complexity Low_complexity 1 21 0 21 71 0 0 chr13 18256863 18256905 -101487993 + GC_rich Low_complexity Low_complexity 1 42 0 1999 95 3 7 chr13 18258119 18258445 -101486453 - AluSx SINE Alu 0 312 6 2040 154 12 86 chr13 18259178 18259606 -101485292 - MSTD LTR MaLR 0 396 1 3775 227 101 104 chr13 18259618 18259941 -101484957 - MSTB-int LTR MaLR -14 1637 1315 2381 172 49 5 chr13 18259941 18260009 -101484889 - MSTB LTR MaLR 0 426 362 1845 135 6 32 chr13 18260009 18260320 -101484578 + AluJo SINE Alu 1 303 -9 2381 172 49 5 chr13 18260320 18260659 -101484239 - MSTB LTR MaLR -64 362 1 3775 227 101 104 chr13 18260659 18261415 -101483483 - MSTB-int LTR MaLR -336 1315 562 2264 66 0 3 chr13 18261415 18261703 -101483195 - AluY SINE Alu -15 296 10 3775 227 101 104 chr13 18261703 18262259 -101482639 - MSTB-int LTR MaLR -1089 562 6 1582 204 163 12 chr13 18262275 18262751 -101482147 - L1MC3 LINE L1 -373 7412 6856 189 0 0 0 chr13 18262751 18262772 -101482126 + (TG)n Simple_repeat Simple_repeat 2 22 0 1582 204 163 12 chr13 18262772 18262866 -101482032 - L1MC3 LINE L1 -929 6856 6778 336 290 14 69 chr13 18262899 18263044 -101481854 + L2 LINE L2 3136 3272 0 1448 182 62 3 chr13 18264673 18264997 -101479901 - MLT2D LTR ERVL -52 362 20 207 0 0 0 chr13 18265630 18265653 -101479245 + (TTG)n Simple_repeat Simple_repeat 2 24 0 209 294 109 34 chr13 18266895 18267014 -101477884 + MIR SINE MIR 108 235 -27 1877 231 2 23 chr13 18267572 18268043 -101476855 + L1M4 LINE L1 4867 5327 -819 22641 54 13 3 chr13 18268045 18270836 -101474062 + L1P LINE L1 4 2823 -3323 1787 155 7 3 chr13 18274097 18274407 -101470491 - AluJb SINE Alu -1 311 1 334 246 26 18 chr13 18274741 18274855 -101470043 - L1MEc LINE L1 -3108 3107 2993 57 28 0 0 chr13 18274860 18274931 -101469967 + AT_rich Low_complexity Low_complexity 1 71 0 2651 247 31 67 chr13 18274936 18275339 -101469559 - L1MEc LINE L1 -3216 2999 2583 1721 146 34 10 chr13 18275339 18275633 -101469265 - AluSx SINE Alu -3 309 9 2651 247 31 67 chr13 18275633 18276225 -101468673 - L1MEc LINE L1 -3632 2583 1971 789 122 257 0 chr13 18276225 18276345 -101468553 - MER5A DNA MER1_type -1 188 100 234 0 0 0 chr13 18276345 18276371 -101468527 + (CTG)n Simple_repeat Simple_repeat 1 26 0 789 122 257 0 chr13 18276371 18276398 -101468500 - MER5A DNA MER1_type -89 100 3 2651 247 31 67 chr13 18276398 18276427 -101468471 - L1MEc LINE L1 -4244 1971 1942 2077 121 0 9 chr13 18276427 18276742 -101468156 - AluSx SINE Alu 0 312 1 2651 247 31 67 chr13 18276742 18277108 -101467790 - L1MEc LINE L1 -4273 1942 1726 2175 97 0 0 chr13 18277108 18277396 -101467502 - AluSx SINE Alu -24 288 1 2651 247 31 67 chr13 18277396 18277543 -101467355 - L1MEc LINE L1 -4489 1726 1575 2373 161 50 10 chr13 18277935 18278339 -101466559 - MSTB LTR MaLR -4 422 3 351 293 78 42 chr13 18279919 18280086 -101464812 - MIR SINE MIR -30 232 60 2241 97 0 3 chr13 18280228 18280527 -101464371 + AluSx SINE Alu 1 298 -14 1221 138 0 0 chr13 18280732 18280921 -101463977 - AluSg/x SINE Alu -4 308 120 2009 125 0 0 chr13 18280931 18281219 -101463679 - AluSx SINE Alu -22 290 3 530 221 137 16 chr13 18282552 18282742 -101462156 - MLT1H1 LTR MaLR 0 555 343 270 315 54 36 chr13 18283056 18283167 -101461731 - MIR SINE MIR -69 139 27 380 293 0 45 chr13 18283191 18283324 -101461574 - MARNA DNA Mariner -227 359 233 180 227 0 23 chr13 18283518 18283562 -101461336 + MIR3 SINE MIR 144 186 -22 1424 158 120 19 chr13 18283937 18283948 -101460950 - AluJo SINE Alu -9 293 285 194 0 39 0 chr13 18283948 18283974 -101460924 + (GA)n Simple_repeat Simple_repeat 1 27 0 1424 158 120 19 chr13 18283974 18284228 -101460670 - AluJo SINE Alu -17 285 1 182 36 0 36 chr13 18284284 18284312 -101460586 + (TTTTA)n Simple_repeat Simple_repeat 2 28 0 5681 147 30 13 chr13 18284538 18285329 -101459569 - L1MA4 LINE L1 -1 6299 5487 2498 60 3 0 chr13 18285329 18285628 -101459270 - AluY SINE Alu -11 300 1 5681 147 30 13 chr13 18285628 18285813 -101459085 - L1MA4 LINE L1 -813 5487 5307 330 320 10 0 chr13 18285957 18286054 -101458844 - L2 LINE L2 0 3272 3175 2389 97 3 0 chr13 18286800 18287111 -101457787 - AluSq SINE Alu -1 312 1 226 203 54 27 chr13 18287303 18287377 -101457521 - MIR SINE MIR -103 159 84 29 0 0 0 chr13 18287380 18287409 -101457489 + AT_rich Low_complexity Low_complexity 1 29 0 1032 104 8 0 chr13 18287409 18287543 -101457355 - AluJo SINE Alu -177 135 1 2377 99 3 0 chr13 18287909 18288221 -101456677 + AluSp SINE Alu 1 313 0 1047 262 52 56 chr13 18288290 18288794 -101456104 - HAL1 LINE L1 -4 2503 2002 414 276 99 17 chr13 18288960 18289141 -101455757 - HAL1 LINE L1 -702 1805 1610 261 321 114 15 chr13 18289139 18289270 -101455628 - HAL1 LINE L1 -2336 171 28 * 320 319 43 0 chr13 18289402 18289518 -101455380 - MIR3 SINE MIR -74 134 14 514 100 0 12 chr13 18289923 18290003 -101454895 + MADE1 DNA Mariner 1 79 -1 829 199 0 23 chr13 18292254 18292425 -101452473 + FRAM SINE Alu 8 174 -2 2312 106 0 3 chr13 18292679 18292982 -101451916 - AluSx SINE Alu -10 302 1 2432 63 0 13 chr13 18293391 18293692 -101451206 + AluY SINE Alu 1 297 -14 382 279 110 0 chr13 18293780 18293934 -101450964 - MIR SINE MIR 0 262 92 669 232 43 53 chr13 18294440 18294647 -101450251 - MER3 DNA MER1_type -2 207 3 2514 81 0 3 chr13 18294703 18295010 -101449888 + AluSg SINE Alu 1 306 -4 180 0 0 0 chr13 18295377 18295397 -101449501 + (TC)n Simple_repeat Simple_repeat 2 21 0 21 36 0 0 chr13 18296066 18296094 -101448804 + AT_rich Low_complexity Low_complexity 1 28 0 922 213 32 101 chr13 18296995 18297333 -101447565 + MLT1J LTR MaLR 25 339 -172 267 107 125 0 chr13 18297643 18297699 -101447199 - Alu SINE Alu 0 301 239 1556 226 3 0 chr13 18298796 18299106 -101445792 + MER82 DNA MER2_type 2 312 -341 375 272 123 73 chr13 18299111 18299185 -101445713 + L1M4 LINE L1 4584 4653 -1493 1654 153 62 7 chr13 18299185 18299345 -101445553 + L1MA9 LINE L1 5987 6137 -175 387 0 0 0 chr13 18299345 18299388 -101445510 + (CA)n Simple_repeat Simple_repeat 2 44 0 1654 153 62 7 chr13 18299388 18299535 -101445363 + L1MA9 LINE L1 6137 6311 -1 375 272 123 73 chr13 18299535 18300014 -101444884 + L1M4 LINE L1 4653 5176 -970 2527 68 0 7 chr13 18300014 18300322 -101444576 + AluY SINE Alu 1 306 -5 375 272 123 73 chr13 18300322 18300407 -101444491 + L1M4 LINE L1 5176 5255 -891 1085 151 17 6 chr13 18300412 18300584 -101444314 + AluSg/x SINE Alu 135 308 -2 800 180 9 104 chr13 18300659 18300870 -101444028 - MLT1B LTR MaLR -197 193 3 1493 161 31 93 chr13 18300889 18301120 -101443778 - MLT1B-int LTR MaLR -17 1718 1511 2730 185 4 0 chr13 18301120 18301601 -101443297 + L1PB4 LINE L1 5669 6151 -5 1493 161 31 93 chr13 18301601 18301693 -101443205 - MLT1B-int LTR MaLR -224 1511 1415 2017 141 7 7 chr13 18301859 18302163 -101442735 + AluSx SINE Alu 1 304 -8 301 342 7 7 chr13 18302273 18302425 -101442473 + L1MC/D LINE L1 4925 5076 -1070 3847 156 62 40 chr13 18302443 18302721 -101442177 + L1PA16 LINE L1 4683 4953 -1213 3847 129 52 53 chr13 18302721 18303455 -101441443 + L1PA16 LINE L1 5431 6166 0 3847 156 62 40 chr13 18303455 18303790 -101441108 + L1PA16 LINE L1 4953 6166 0 1804 160 3 0 chr13 18303972 18304286 -101440612 - AluSx SINE Alu 0 315 1 23 0 0 0 chr13 18305577 18305600 -101439298 + AT_rich Low_complexity Low_complexity 1 23 0 2185 104 7 0 chr13 18305685 18305964 -101438934 + AluSq SINE Alu 1 281 -32 395 191 0 64 chr13 18305976 18306070 -101438828 - L1MC4 LINE L1 -1339 6703 6616 276 229 0 0 chr13 18306077 18306160 -101438738 + (TA)n Simple_repeat Simple_repeat 1 83 0 249 292 42 21 chr13 18306219 18306315 -101438583 + MER5B DNA MER1_type 1 98 -80 280 213 113 43 chr13 18306564 18306705 -101438193 + L1MC/D LINE L1 5317 5467 -2341 2689 118 14 21 chr13 18306730 18307164 -101437734 - L1PA13 LINE L1 0 6163 5733 356 131 16 0 chr13 18307164 18307225 -101437673 + MER52C LTR ERV1 1 62 -1216 6016 122 101 28 chr13 18307225 18308264 -101436634 + MER52C LTR ERV1 164 1278 0 4028 98 17 41 chr13 18308265 18308848 -101436050 + MER52C-int LTR ERV1 3 571 -6520 4154 166 28 4 chr13 18308948 18310210 -101434688 + MER52C-int LTR ERV1 1775 3204 -3887 3972 170 24 15 chr13 18310229 18310910 -101433988 + MER52C-int LTR ERV1 807 1493 -5598 697 139 70 0 chr13 18310930 18311045 -101433853 + MER52C-int LTR ERV1 1006 1128 -4818 2506 167 54 32 chr13 18311049 18311716 -101433182 + MER52C-int LTR ERV1 1416 1990 -3596 3182 148 75 8 chr13 18311761 18312263 -101432635 + MER52C-int LTR ERV1 692 1259 -6557 360 0 0 0 chr13 18312263 18312303 -101432595 + (TG)n Simple_repeat Simple_repeat 2 41 0 3182 148 75 8 chr13 18312303 18312423 -101432475 + MER52C-int LTR ERV1 1259 1369 -6447 260 128 0 0 chr13 18312401 18312448 -101432450 + MER52C-int LTR ERV1 1064 1110 -7010 * 2655 203 157 68 chr13 18312447 18313612 -101431286 + MER52C-int LTR ERV1 4480 5748 -1670 299 83 62 0 chr13 18313610 18313658 -101431240 + MER52C-int LTR ERV1 5976 6026 -1179 * 1408 91 10 20 chr13 18313660 18313858 -101431040 + MER52C-int LTR ERV1 6892 7087 -4 1398 146 64 6 chr13 18313858 18314127 -101430771 + MER52C LTR ERV1 23 390 -888 3760 109 9 13 chr13 18314130 18315113 -101429785 - L1P4 LINE L1 -427 5736 4761 584 298 58 4 chr13 18315158 18315400 -101429498 + L1ME4a LINE L1 5574 5828 -293 352 264 98 12 chr13 18315555 18315718 -101429180 - MIR SINE MIR 0 262 86 27 0 0 0 chr13 18315895 18315922 -101428976 + AT_rich Low_complexity Low_complexity 1 27 0 205 273 0 0 chr13 18315991 18316035 -101428863 + (TG)n Simple_repeat Simple_repeat 2 45 0 214 227 0 0 chr13 18316262 18316306 -101428592 + MIR3 SINE MIR 158 201 -7 3412 168 28 23 chr13 18316443 18317098 -101427800 - L1MB3 LINE L1 -3 6180 5523 2100 166 19 27 chr13 18317162 18317643 -101427255 + pTR5 LTR ERV1 738 1214 -1224 456 306 56 49 chr13 18318394 18318678 -101426220 - L1ME1 LINE L1 -2 6164 5879 263 178 0 40 chr13 18319017 18319118 -101425780 + (TA)n Simple_repeat Simple_repeat 1 97 0 1604 171 43 20 chr13 18319993 18320298 -101424600 - AluJo SINE Alu 0 312 1 37 39 0 0 chr13 18320886 18320937 -101423961 + AT_rich Low_complexity Low_complexity 1 51 0 780 247 43 28 chr13 18321516 18321771 -101423127 - MLT1C LTR MaLR -1 466 208 972 267 102 27 chr13 18321773 18321843 -101423055 - HAL1 LINE L1 -423 2084 2021 198 0 0 0 chr13 18321843 18321865 -101423033 + (TTTG)n Simple_repeat Simple_repeat 2 23 0 972 267 102 27 chr13 18321865 18322243 -101422655 - HAL1 LINE L1 -486 2021 1602 555 222 31 17 chr13 18322310 18322527 -101422371 - L1MCc LINE L1 -4890 1533 1434 803 239 0 0 chr13 18322527 18322686 -101422212 - FRAM SINE Alu -3 163 5 555 222 31 17 chr13 18322686 18322715 -101422183 - L1MCc LINE L1 -4989 1434 1407 2020 261 104 59 chr13 18322725 18323838 -101421060 - L1MCc LINE L1 -5238 1185 23 259 235 289 51 chr13 18323845 18324160 -101420738 - HAL1 LINE L1 -1004 1503 1114 263 269 60 101 chr13 18324172 18324321 -101420577 - L1M4 LINE L1 -5692 850 708 304 302 55 33 chr13 18324420 18324602 -101420296 - L1M4 LINE L1 -6319 223 38 525 274 106 43 chr13 18324641 18324991 -101419907 - HAL1 LINE L1 -1398 1109 738 379 265 53 15 chr13 18325049 18325181 -101419717 - HAL1 LINE L1 -1966 541 405 380 243 48 90 chr13 18325334 18325523 -101419375 - HAL1 LINE L1 -2311 196 16 182 356 79 10 chr13 18327134 18327235 -101417663 + L2 LINE L2 3137 3244 -28 203 289 66 42 chr13 18327535 18327661 -101417237 - MIR SINE MIR -68 140 35 515 263 96 17 chr13 18327871 18328092 -101416806 - MIR SINE MIR -18 244 3 432 293 45 0 chr13 18329004 18329137 -101415761 - L2 LINE L2 0 3272 3134 2294 116 3 0 chr13 18329155 18329466 -101415432 + AluSx SINE Alu 1 312 0 1604 265 64 49 chr13 18329937 18330878 -101414020 + L1MC5 LINE L1 6096 7072 -889 2799 159 37 33 chr13 18330905 18331396 -101413502 - LTR42 LTR ERVL 0 495 3 898 229 112 46 chr13 18331411 18331847 -101413051 + L1MC5 LINE L1 7269 7733 -228 255 309 73 15 chr13 18332331 18332535 -101412363 + L1MEc LINE L1 898 1113 -6025 418 288 69 2 chr13 18332910 18333128 -101411770 + L1MEc LINE L1 1379 1680 -5323 307 361 0 0 chr13 18333178 18333311 -101411587 + LTR16B LTR ERVL 1 133 -331 3151 264 72 23 chr13 18333318 18334600 -101410298 + L1MEc LINE L1 2295 3512 -3445 1993 157 3 10 chr13 18334600 18334913 -101409985 - AluSx SINE Alu -1 311 1 3151 264 72 23 chr13 18334913 18335568 -101409330 + L1MEc LINE L1 3512 4422 -2535 2049 116 34 7 chr13 18335568 18335861 -101409037 + AluSx SINE Alu 1 301 -11 3151 264 72 23 chr13 18335861 18336037 -101408861 + L1MEc LINE L1 4422 4588 -2369 263 233 8 42 chr13 18336105 18336225 -101408673 + (TTATA)n Simple_repeat Simple_repeat 2 117 0 25 0 0 0 chr13 18336576 18336601 -101408297 + AT_rich Low_complexity Low_complexity 1 25 0 434 286 7 7 chr13 18337288 18337435 -101407463 + LTR16B LTR ERVL 1 147 -317 417 266 89 13 chr13 18337465 18337623 -101407275 + LTR16B LTR ERVL 293 462 -2 230 272 93 107 chr13 18337976 18338417 -101406481 - L2 LINE L2 -666 2648 2214 891 128 8 8 chr13 18340984 18341109 -101403789 + AluSq/x SINE Alu 1 125 -188 201 147 0 0 chr13 18341968 18342002 -101402896 + (TCCCC)n Simple_repeat Simple_repeat 5 38 0 2023 129 7 0 chr13 18342007 18342285 -101402613 - AluSx SINE Alu -32 280 1 6324 156 36 13 chr13 18342569 18343624 -101401274 + ERVL-D LTR ERVL 3806 4884 -880 2968 154 31 19 chr13 18343624 18344164 -101400734 + ERVL-D LTR ERVL 5211 5757 -7 1403 204 143 30 chr13 18344164 18344536 -101400362 + MLT2D LTR ERVL 1 414 0 2434 82 0 3 chr13 18344630 18344935 -101399963 - AluY SINE Alu -7 304 1 489 234 113 63 chr13 18346192 18346431 -101398467 - MER112 DNA MER1_type -7 253 3 3050 171 49 4 chr13 18346756 18347287 -101397611 - MER41D LTR ERV1 -2 555 1 413 193 61 35 chr13 18347545 18347659 -101397239 + MER21B LTR ERV1 690 806 -57 1828 194 21 5 chr13 18347686 18348063 -101396835 + L1MB4 LINE L1 5792 6174 -6 349 200 0 0 chr13 18348118 18348183 -101396715 + L1MB8 LINE L1 6113 6177 -1 584 81 11 0 chr13 18348856 18348943 -101395955 + (TTCC)n Simple_repeat Simple_repeat 1 88 0 1806 166 23 3 chr13 18348943 18349244 -101395654 - AluSx SINE Alu -5 307 1 2786 127 27 22 chr13 18349356 18349601 -101395297 + HUERS-P2 LTR ERV1 2187 2429 -659 2066 125 7 14 chr13 18349601 18349898 -101395000 + AluSq SINE Alu 1 295 -18 2786 127 27 22 chr13 18349898 18350471 -101394427 + HUERS-P2 LTR ERV1 2429 3061 -27 716 101 18 18 chr13 18350482 18350591 -101394307 - MER41D LTR ERV1 -448 109 1 3639 149 77 73 chr13 18350690 18351470 -101393428 + LTR1 LTR ERV1 3 785 0 189 355 47 0 chr13 18352454 18352561 -101392337 - L2 LINE L2 0 3272 3161 18438 93 2 3 chr13 18352894 18356358 -101388540 + L1PA8 LINE L1 2670 6165 -7 21 0 0 0 chr13 18356711 18356732 -101388166 + AT_rich Low_complexity Low_complexity 1 21 0 321 276 83 26 chr13 18357782 18357938 -101386960 - L3 LINE CR1 -289 1288 1124 266 353 0 10 chr13 18358036 18358138 -101386760 - L3 LINE CR1 -712 865 765 298 295 32 11 chr13 18358206 18358301 -101386597 + MIR SINE MIR 2 98 -164 1335 163 23 9 chr13 18358654 18359043 -101385855 - LTR32 LTR ERVL 0 471 15 254 340 52 0 chr13 18359677 18359774 -101385124 - L3 LINE CR1 -1134 443 342 288 177 62 73 chr13 18360108 18360204 -101384694 - L1ME4a LINE L1 -63 6058 5964 953 249 94 57 chr13 18360234 18360428 -101384470 - HAL1b LINE L1 0 1348 1163 2263 57 17 37 chr13 18360428 18360728 -101384170 + AluSg SINE Alu 1 294 -16 953 249 94 57 chr13 18360728 18361096 -101383802 - HAL1b LINE L1 -185 1163 765 682 220 83 111 chr13 18361251 18361389 -101383509 - HAL1b LINE L1 -883 465 325 2047 146 0 16 chr13 18361389 18361704 -101383194 - AluSx SINE Alu -2 310 1 682 220 83 111 chr13 18361704 18361915 -101382983 - HAL1b LINE L1 -1023 325 126 1661 142 31 52 chr13 18363023 18363347 -101381551 + L1MB3 LINE L1 5655 5971 -212 970 161 30 13 chr13 18363391 18363600 -101381298 + L1MB3 LINE L1 5928 6142 -41 2364 98 0 9 chr13 18363600 18363915 -101380983 + AluSx SINE Alu 1 312 0 192 111 333 22 chr13 18364015 18364105 -101380793 - MER5A DNA MER1_type -68 121 4 488 302 47 6 chr13 18364993 18365165 -101379733 - MER112 DNA MER1_type -7 253 75 2776 13 0 13 chr13 18366246 18366553 -101378345 - AluYa5 SINE Alu -8 303 1 201 157 61 5 chr13 18366736 18366942 -101377956 + (TA)n Simple_repeat Simple_repeat 1 217 0 258 241 19 0 chr13 18367035 18367089 -101377809 + L2 LINE L2 3218 3272 0 1091 185 0 24 chr13 18367131 18367336 -101377562 - AluJo SINE Alu -17 295 96 216 336 82 33 chr13 18367353 18367475 -101377423 + MIR3 SINE MIR 33 160 -48 180 321 9 66 chr13 18367886 18367992 -101376906 - MIR SINE MIR -77 185 86 738 203 0 0 chr13 18368476 18368609 -101376289 + AluJ SINE Alu 1 133 -169 269 227 16 16 chr13 18368609 18368651 -101376247 + AluJ/F(R)AM SINE Alu 134 150 -152 250 231 0 0 chr13 18368651 18368703 -101376195 + LTR30 LTR ERV1 1 52 -670 1140 143 71 26 chr13 18368703 18368962 -101375936 + LTR12 LTR ERV1 55 1982 -456 304 120 0 0 chr13 18368983 18369033 -101375865 + LTR12 LTR ERV1 228 277 -437 227 262 0 36 chr13 18369033 18369117 -101375781 + LTR30 LTR ERV1 544 624 -98 564 124 12 99 chr13 18369119 18369244 -101375654 + LTR12 LTR ERV1 364 714 0 775 114 16 16 chr13 18369244 18369367 -101375531 + AluSg/x SINE Alu 172 294 -18 185 246 15 15 chr13 18370302 18370367 -101374531 + MIR3 SINE MIR 106 170 -38 443 130 0 26 chr13 18370630 18370707 -101374191 - MADE1 DNA Mariner -5 75 1 378 231 142 8 chr13 18370963 18371097 -101373801 + L1MB7 LINE L1 5564 5715 -406 368 252 79 8 chr13 18371599 18371726 -101373172 + L1ME4a LINE L1 5984 6119 -2 1780 186 28 25 chr13 18372026 18372387 -101372511 + MLT1A1 LTR MaLR 4 365 0 187 336 92 0 chr13 18372939 18373058 -101371840 - L2 LINE L2 0 3272 3143 944 223 119 86 chr13 18373876 18374329 -101370569 + MLT1J LTR MaLR 25 492 -19 267 107 125 0 chr13 18374525 18374581 -101370317 - Alu SINE Alu 0 300 238 418 288 69 2 chr13 18375373 18375591 -101369307 + L1ME LINE L1 1379 1680 -5323 307 361 0 0 chr13 18375641 18375774 -101369124 + LTR16B LTR ERVL 1 133 -331 1793 276 53 19 chr13 18375781 18377061 -101367837 + L1ME LINE L1 2295 3638 -3319 1993 157 3 10 chr13 18377066 18377379 -101367519 - AluSx SINE Alu -1 311 1 23 0 0 0 chr13 18377463 18377486 -101367412 + AT_rich Low_complexity Low_complexity 1 23 0 276 287 0 0 chr13 18378105 18378262 -101366636 + (CA)n Simple_repeat Simple_repeat 1 157 0 501 329 2 8 chr13 18378291 18378794 -101366104 + (CA)n Simple_repeat Simple_repeat 1 499 0 2049 224 18 2 chr13 18380433 18380885 -101364013 + L1MB7 LINE L1 5726 6184 0 540 268 47 54 chr13 18381711 18382096 -101362802 + L2 LINE L2 1707 2172 -1142 860 274 77 24 chr13 18382393 18382839 -101362059 + L1MEc LINE L1 895 1389 -4921 2264 108 7 0 chr13 18382839 18383145 -101361753 + AluSq SINE Alu 1 308 -5 860 274 77 24 chr13 18383145 18383319 -101361579 + L1MEc LINE L1 1389 1552 -4758 851 271 65 63 chr13 18383322 18383750 -101361148 + L2 LINE L2 2282 2710 -604 799 279 217 9 chr13 18383851 18384334 -101360564 + L2 LINE L2 2687 3309 -4 197 224 15 104 chr13 18384861 18384928 -101359970 - L2 LINE L2 -9 3304 3244 286 358 83 8 chr13 18384934 18385054 -101359844 - MER5A DNA MER1_type 0 189 61 419 52 17 0 chr13 18385370 18385428 -101359470 + (TAGA)n Simple_repeat Simple_repeat 2 60 0 1264 214 43 23 chr13 18385433 18385732 -101359166 - L1MC2 LINE L1 -56 6288 5984 1583 157 39 39 chr13 18386103 18386409 -101358489 + AluJo SINE Alu 1 306 -6 2528 199 42 7 chr13 18388034 18388384 -101356514 - L1MB7 LINE L1 0 6184 5807 2000 120 14 7 chr13 18388384 18388676 -101356222 - AluSx SINE Alu -14 298 5 2528 199 42 7 chr13 18388676 18388872 -101356026 - L1MB7 LINE L1 -377 5807 5619 2713 152 24 35 chr13 18389254 18389747 -101355151 + LTR45B LTR ERV1 2 489 0 274 221 191 0 chr13 18389952 18390020 -101354878 - L2 LINE L2 -26 3287 3207 350 250 68 57 chr13 18390970 18391073 -101353825 - MER5B DNA MER1_type 0 178 71 1945 138 6 6 chr13 18391073 18391384 -101353514 - AluY SINE Alu 0 311 1 350 250 68 57 chr13 18391384 18391456 -101353442 - MER5B DNA MER1_type -107 71 1 208 287 0 0 chr13 18392108 18392216 -101352682 + (GGGTG)n Simple_repeat Simple_repeat 4 111 0 387 0 0 0 chr13 18394507 18394550 -101350348 + (TG)n Simple_repeat Simple_repeat 2 44 0 261 0 0 0 chr13 18394550 18394579 -101350319 + (TTG)n Simple_repeat Simple_repeat 1 29 0 1361 150 0 5 chr13 18394605 18394818 -101350080 + AluSq SINE Alu 1 212 -101 444 50 0 17 chr13 18394818 18394878 -101350020 + AluSq/x SINE Alu 78 136 -177 2116 114 0 3 chr13 18394879 18395176 -101349722 + AluSx SINE Alu 3 298 -14 2147 116 10 0 chr13 18395912 18396222 -101348676 + AluSp SINE Alu 1 313 0 2016 111 19 32 chr13 18396272 18396588 -101348310 + AluSx SINE Alu 1 312 0 27 29 0 0 chr13 18396631 18396665 -101348233 + AT_rich Low_complexity Low_complexity 1 34 0 1990 171 42 46 chr13 18396685 18397117 -101347781 - MSTB1 LTR MaLR -2 430 1 207 0 0 0 chr13 18397642 18397665 -101347233 + (T)n Simple_repeat Simple_repeat 1 23 0 459 189 68 8 chr13 18398248 18398380 -101346518 + L1ME2 LINE L1 5182 5321 -825 475 183 0 0 chr13 18398390 18398472 -101346426 + FLAM_A SINE Alu 42 123 -19 731 210 81 5 chr13 18398505 18398691 -101346207 + L1ME2 LINE L1 5328 5527 -637 1080 195 4 22 chr13 18398691 18398917 -101345981 - AluJo SINE Alu -18 294 73 2171 221 56 43 chr13 18398922 18399532 -101345366 + L1ME2 LINE L1 5535 6152 -12 1090 168 13 35 chr13 18399877 18400109 -101344789 + AluJo SINE Alu 86 312 0 334 286 108 14 chr13 18400865 18401078 -101343820 + L1ME2 LINE L1 5576 5808 -313 188 238 24 0 chr13 18401080 18401122 -101343776 + L2 LINE L2 2348 2390 -924 482 272 209 10 chr13 18401132 18401338 -101343560 + MIR SINE MIR 2 248 -14 1638 177 112 58 chr13 18401338 18401767 -101343131 - LTR47A LTR ERVL 0 452 1 625 258 8 0 chr13 18401781 18401913 -101342985 - MER5B DNA MER1_type -11 167 35 419 315 89 40 chr13 18401916 18402344 -101342554 + L1ME LINE L1 141 589 -5616 1546 260 92 83 chr13 18402547 18402856 -101342042 + L1ME LINE L1 663 968 -5428 2201 88 0 0 chr13 18402856 18403140 -101341758 + AluSx SINE Alu 1 284 -28 1546 260 92 83 chr13 18403140 18404297 -101340601 + L1ME LINE L1 968 2147 -4249 2225 129 51 58 chr13 18404297 18404745 -101340153 + MER65A LTR ERV1 1 445 0 1546 260 92 83 chr13 18404745 18404876 -101340022 + L1ME LINE L1 2147 2275 -4121 530 290 94 34 chr13 18404874 18405202 -101339696 + L1ME LINE L1 37 384 -6012 * 1826 174 0 0 chr13 18405435 18405745 -101339153 + AluJb SINE Alu 1 310 -2 2039 257 26 22 chr13 18405752 18406473 -101338425 + L1ME LINE L1 3134 3857 -2358 986 187 5 0 chr13 18406482 18406669 -101338229 + L1ME LINE L1 3973 4160 -2055 604 214 13 120 chr13 18406651 18406968 -101337930 + L1ME2 LINE L1 5881 6163 -1 * 359 314 111 59 chr13 18407099 18407899 -101336999 + L2 LINE L2 2437 3271 -1 21 0 0 0 chr13 18408519 18408540 -101336358 + AT_rich Low_complexity Low_complexity 1 21 0 302 236 39 94 chr13 18408567 18408770 -101336128 + L1ME4a LINE L1 5929 6120 -1 266 319 90 21 chr13 18409242 18409386 -101335512 + MIR SINE MIR 92 245 -17 361 311 57 36 chr13 18409449 18409642 -101335256 - MIR SINE MIR -1 261 65 1241 223 72 50 chr13 18409649 18410106 -101334792 + MLT1C LTR MaLR 1 467 0 185 252 185 50 chr13 18411237 18411356 -101333542 + MIR SINE MIR 128 262 0 2227 107 0 0 chr13 18411533 18411833 -101333065 + AluSq SINE Alu 1 300 -13 240 143 0 0 chr13 18412303 18412345 -101332553 + (TAGA)n Simple_repeat Simple_repeat 1 42 0 277 235 37 25 chr13 18412946 18413027 -101331871 + L1MC5 LINE L1 7844 7925 -36 2459 44 0 7 chr13 18413234 18413531 -101331367 - AluY SINE Alu -16 295 1 567 276 113 22 chr13 18413561 18413836 -101331062 - L1M4 LINE L1 -920 5226 4927 954 179 0 36 chr13 18414020 18414216 -101330682 - AluJb SINE Alu -5 307 119 1840 284 113 30 chr13 18414285 18415466 -101329432 - L1M4 LINE L1 -1559 4587 3309 859 207 35 83 chr13 18415505 18415843 -101329055 - L1MC5 LINE L1 -726 7235 6914 1363 123 107 35 chr13 18415863 18415925 -101328973 - L1PA16 LINE L1 -9 6157 6101 2480 104 19 19 chr13 18415925 18416289 -101328609 + THE1B LTR MaLR 1 364 0 1363 123 107 35 chr13 18416289 18416487 -101328411 - L1PA16 LINE L1 -65 6101 5878 281 314 119 8 chr13 18416736 18416854 -101328044 - L2 LINE L2 -5 3267 3137 223 233 33 17 chr13 18417916 18417976 -101326922 + CT-rich Low_complexity Low_complexity 1 61 0 724 100 40 0 chr13 18418068 18418168 -101326730 - LTR12 LTR ERV1 0 714 611 295 177 70 32 chr13 18418173 18418254 -101326644 - LTR30 LTR ERV1 -75 624 479 1401 106 0 121 chr13 18418254 18418480 -101326418 - LTR12 LTR ERV1 -429 285 94 2268 68 10 0 chr13 18418480 18418773 -101326125 - AluY SINE Alu -15 296 1 1401 106 0 121 chr13 18418773 18418811 -101326087 - LTR12 LTR ERV1 -620 94 53 226 269 0 0 chr13 18418811 18418863 -101326035 - LTR30 LTR ERV1 -670 52 1 448 204 11 0 chr13 18419100 18419188 -101325710 + MER3 DNA MER1_type 1 89 -120 323 295 151 43 chr13 18419218 18419699 -101325199 - L2 LINE L2 -65 3248 2640 391 198 5 43 chr13 18420399 18420586 -101324312 + GA-rich Low_complexity Low_complexity 1 180 0 448 206 15 45 chr13 18420594 18420931 -101323967 + G-rich Low_complexity Low_complexity 1 326 0 326 138 47 39 chr13 18421691 18422116 -101322782 + (CA)n Simple_repeat Simple_repeat 1 428 0 451 184 226 16 chr13 18422285 18422475 -101322423 + MLT1B LTR MaLR 28 257 -133 213 221 95 21 chr13 18422911 18423006 -101321892 - MIR SINE MIR -132 130 29 263 233 0 0 chr13 18423561 18423621 -101321277 + L2 LINE L2 2471 2530 -784 1099 219 39 48 chr13 18423729 18424039 -101320859 + MER58B DNA MER1_type 35 341 0 336 249 230 9 chr13 18424040 18424257 -101320641 + L2 LINE L2 2673 2937 -377 786 205 0 6 chr13 18424497 18424843 -101320055 + (TGG)n Simple_repeat Simple_repeat 1 343 0 343 272 163 14 chr13 18425144 18425291 -101319607 - L1ME4a LINE L1 -7 6114 5946 2171 72 17 10 chr13 18425408 18425698 -101319200 + AluY SINE Alu 1 292 -19 2107 113 23 10 chr13 18426648 18426957 -101317941 - AluSq SINE Alu 0 313 1 223 306 0 0 chr13 18426957 18427019 -101317879 - L2 LINE L2 -10 3303 3242 916 283 76 54 chr13 18427553 18428443 -101316455 + L2 LINE L2 2383 3309 -4 1202 260 68 14 chr13 18428853 18429222 -101315676 + L1MD3 LINE L1 7413 7801 -194 2143 124 3 0 chr13 18430963 18431269 -101313629 - AluSx SINE Alu -5 307 1 22 0 0 0 chr13 18431849 18431871 -101313027 + AT_rich Low_complexity Low_complexity 1 22 0 2024 101 0 4 chr13 18432305 18432581 -101312317 - AluSx SINE Alu -24 288 14 433 251 62 72 chr13 18433199 18433393 -101311505 + L1MEd LINE L1 734 928 -5191 200 59 29 0 chr13 18433671 18433705 -101311193 + (TTTA)n Simple_repeat Simple_repeat 2 36 0 2002 122 0 0 chr13 18433709 18433988 -101310910 - AluSx SINE Alu -33 279 1 2163 255 84 36 chr13 18435007 18436464 -101308434 + L1MCc LINE L1 817 2619 -4503 2011 113 0 0 chr13 18436464 18436738 -101308160 + AluSx SINE Alu 3 276 -36 2163 255 84 36 chr13 18436738 18437161 -101307737 + L1MCc LINE L1 2619 3020 -4102 * 2329 201 24 6 chr13 18437160 18437668 -101307230 + L1 LINE L1 4122 4638 -1508 202 208 21 21 chr13 18438528 18438576 -101306322 + L2 LINE L2 3225 3272 0 228 250 98 27 chr13 18438876 18438988 -101305910 + MER103 DNA DNA 46 165 -1 2156 104 0 3 chr13 18440489 18440787 -101304111 + AluSx SINE Alu 1 297 -15 648 26 0 0 chr13 18444110 18444188 -101300710 - L1PA5 LINE L1 -1819 4327 4250 * 5112 121 0 1 chr13 18444187 18444961 -101299937 + L1PA5 LINE L1 4327 5099 -1047 5571 53 1 0 chr13 18444961 18445634 -101299264 + L1PA5 LINE L1 5479 6154 0 770 267 86 0 chr13 18445779 18446011 -101298887 - MIR SINE MIR -3 259 8 269 272 114 88 chr13 18447089 18447361 -101297537 - L3 LINE CR1 -2 1575 1297 309 309 12 12 chr13 18447379 18447463 -101297435 - L3 LINE CR1 -427 1150 1067 259 252 71 31 chr13 18447502 18447629 -101297269 - L1ME4a LINE L1 -21 6100 5969 1523 152 107 9 chr13 18448591 18448919 -101295979 - MER46B DNA MER2_type 0 236 2 2035 102 3 3 chr13 18448980 18449295 -101295603 + AluSx SINE Alu 1 315 0 207 0 0 0 chr13 18449294 18449317 -101295581 + (CA)n Simple_repeat Simple_repeat 2 24 0 198 0 0 0 chr13 18449343 18449365 -101295533 + (TG)n Simple_repeat Simple_repeat 1 22 0 319 263 21 0 chr13 18451175 18451270 -101293628 - L1ME4a LINE L1 -628 5534 5438 1392 187 75 69 chr13 18452971 18453346 -101291552 - MLT2C1 LTR ERVL 0 397 21 2062 107 7 0 chr13 18454377 18454678 -101290220 - AluSp SINE Alu 0 305 3 802 109 109 0 chr13 18454682 18454801 -101290097 - AluSp SINE Alu -181 132 1 441 0 0 0 chr13 18455790 18455839 -101289059 + (TG)n Simple_repeat Simple_repeat 2 50 0 2109 92 7 0 chr13 18455839 18456121 -101288777 - AluY SINE Alu -27 284 1 258 32 0 0 chr13 18456871 18456902 -101287996 + (TTTA)n Simple_repeat Simple_repeat 2 32 0 2029 130 0 3 chr13 18457165 18457465 -101287433 + AluSx SINE Alu 1 299 -13 4850 155 35 9 chr13 18457902 18458772 -101286126 - L1 LINE L1 -1521 4625 3734 2216 106 0 0 chr13 18458856 18459157 -101285741 - AluSg SINE Alu -9 301 1 22 0 0 0 chr13 18461363 18461385 -101283513 + AT_rich Low_complexity Low_complexity 1 22 0 670 167 9 0 chr13 18461387 18461495 -101283403 - FLAM_A SINE Alu -33 109 1 236 185 31 15 chr13 18461657 18461722 -101283176 + (CAGAGA)n Simple_repeat Simple_repeat 2 67 0 1835 238 23 34 chr13 18462773 18463263 -101281635 + L1M4 LINE L1 3160 3643 -2503 1345 147 54 0 chr13 18463263 18463487 -101281411 + MER46A DNA MER2_type 1 236 0 1835 238 23 34 chr13 18463487 18463613 -101281285 + L1M4 LINE L1 3643 3769 -2377 257 128 21 0 chr13 18467128 18467175 -101277723 + GA-rich Low_complexity Low_complexity 3 50 0 1807 163 7 0 chr13 18467823 18468112 -101276786 + AluJo SINE Alu 1 291 -21 511 90 13 8 chr13 18468718 18468803 -101276095 + LTR12 LTR ERV1 159 1983 -455 226 111 0 48 chr13 18468911 18468974 -101275924 + (CCCCCA)n Simple_repeat Simple_repeat 5 64 0 226 241 46 35 chr13 18468984 18469071 -101275827 + LTR30 LTR ERV1 556 643 -79 373 147 147 11 chr13 18469073 18469168 -101275730 + LTR12 LTR ERV1 379 486 -228 923 191 43 22 chr13 18469349 18469579 -101275319 + L1MB3 LINE L1 5943 6177 -6 687 216 66 12 chr13 18471353 18471520 -101273378 + FRAM SINE Alu 1 176 0 2165 50 0 0 chr13 18471648 18471909 -101272989 - AluY SINE Alu -14 297 37 196 331 55 24 chr13 18472892 18473019 -101271879 + L2 LINE L2 2869 2999 -273 248 193 70 0 chr13 18473405 18473462 -101271436 + MER5A DNA MER1_type 88 148 -41 426 189 53 0 chr13 18473716 18473811 -101271087 + L1MB8 LINE L1 6078 6177 -1 240 35 0 0 chr13 18473853 18473882 -101271016 + (A)n Simple_repeat Simple_repeat 1 29 0 1472 232 53 48 chr13 18474195 18474718 -101270180 + MER39 LTR ERV1 1 707 0 672 242 21 16 chr13 18475527 18475713 -101269185 + MER5A DNA MER1_type 2 188 -1 2066 134 3 0 chr13 18477724 18478030 -101266868 - AluSx SINE Alu -5 307 1 25 0 0 0 chr13 18478450 18478475 -101266423 + AT_rich Low_complexity Low_complexity 1 25 0 22 0 0 0 chr13 18478611 18478633 -101266265 + AT_rich Low_complexity Low_complexity 1 22 0 2073 107 0 7 chr13 18479067 18479357 -101265541 - AluSx SINE Alu -24 288 1 1675 136 113 3 chr13 18479359 18479660 -101265238 - L1MB2 LINE L1 -34 6137 5804 185 0 0 39 chr13 18479796 18479822 -101265076 + (TTA)n Simple_repeat Simple_repeat 2 26 0 259 258 148 16 chr13 18479916 18479943 -101264955 - L1MA10 LINE L1 -2 6332 6306 2044 174 55 5 chr13 18479943 18480406 -101264492 - L1MB8 LINE L1 -34 6137 5621 813 146 29 23 chr13 18480419 18480590 -101264308 - L1MC3 LINE L1 -3 7782 7611 743 193 0 15 chr13 18481119 18481254 -101263644 - FLAM_A SINE Alu 0 133 1 1947 141 0 3 chr13 18481430 18481734 -101263164 - AluSx SINE Alu -8 304 2 322 269 98 41 chr13 18482282 18482483 -101262415 - MLT1L LTR MaLR -2 610 371 2311 93 0 3 chr13 18483455 18483767 -101261131 + AluSq SINE Alu 1 311 -2 1994 82 20 97 chr13 18484119 18484461 -101260437 + AluYb8 SINE Alu 1 316 -2 400 235 12 0 chr13 18484536 18484617 -101260281 + MER2 DNA MER2_type 1 82 -263 339 164 0 0 chr13 18484617 18484678 -101260220 + CT-rich Low_complexity Low_complexity 3 63 0 2020 126 0 23 chr13 18484680 18484989 -101259909 - AluSq SINE Alu -11 302 1 1443 133 71 16 chr13 18484989 18485244 -101259654 + MER2 DNA MER2_type 71 339 -6 415 218 73 18 chr13 18485261 18485371 -101259527 - MIR SINE MIR -25 237 122 253 238 16 0 chr13 18485958 18486021 -101258877 - Charlie8 DNA MER1_type -2016 401 338 252 286 20 10 chr13 18486116 18486214 -101258684 - Charlie8 DNA MER1_type -2235 182 84 453 245 10 29 chr13 18488201 18488303 -101256595 - L2 LINE L2 0 3313 3214 301 299 0 21 chr13 18488349 18488446 -101256452 + MIR SINE MIR 143 237 -25 1175 115 6 0 chr13 18489033 18489207 -101255691 + AluSg/x SINE Alu 132 306 -6 1537 156 3 65 chr13 18489570 18489708 -101255190 + AluJo SINE Alu 1 111 -201 2366 45 0 0 chr13 18489708 18489994 -101254904 + AluY SINE Alu 1 286 -25 1537 156 3 65 chr13 18489994 18490162 -101254736 + AluJo SINE Alu 111 288 -24 210 316 42 32 chr13 18490171 18490266 -101254632 - L2 LINE L2 -4 3309 3214 272 364 0 17 chr13 18490312 18490430 -101254468 + MIR SINE MIR 143 258 -4 309 278 62 62 chr13 18490488 18490715 -101254183 + L1MCa LINE L1 1864 2090 -4336 208 158 0 53 chr13 18490736 18490793 -101254105 + (TTATA)n Simple_repeat Simple_repeat 1 54 0 1750 171 0 13 chr13 18491270 18491585 -101253313 - AluJb SINE Alu -1 311 1 1650 75 7 121 chr13 18491589 18491894 -101253004 - AluSc SINE Alu -39 270 1 320 286 76 70 chr13 18492103 18492515 -101252383 + L1ME3A LINE L1 5524 6010 -111 21 36 0 0 chr13 18492565 18492593 -101252305 + AT_rich Low_complexity Low_complexity 1 28 0 1908 120 28 10 chr13 18492913 18493204 -101251694 + AluSq SINE Alu 1 296 -17 1012 272 83 17 chr13 18494052 18494401 -101250497 + L1ME1 LINE L1 5790 6161 -5 2143 120 0 0 chr13 18494437 18494738 -101250160 + AluSq SINE Alu 1 301 -12 225 94 0 0 chr13 18495548 18495580 -101249318 + (TG)n Simple_repeat Simple_repeat 1 32 0 1969 193 51 14 chr13 18495693 18496128 -101248770 + L1MA4 LINE L1 5838 6288 -12 816 89 0 0 chr13 18496132 18496244 -101248654 - AluY SINE Alu -6 305 194 1862 152 0 9 chr13 18496334 18496649 -101248249 - AluJb SINE Alu 0 312 1 1996 89 4 0 chr13 18496653 18496924 -101247974 - AluY SINE Alu -39 272 1 21 0 0 0 chr13 18496934 18496955 -101247943 + AT_rich Low_complexity Low_complexity 1 21 0 1360 120 0 0 chr13 18497258 18497449 -101247449 + AluSq SINE Alu 61 251 -62 1055 132 0 6 chr13 18497821 18498004 -101246894 - AluSg/x SINE Alu 0 303 122 185 273 156 0 chr13 18498440 18498517 -101246381 + MIR SINE MIR 124 212 -50 * 190 222 19 56 chr13 18498510 18498564 -101246334 - L2 LINE L2 -27 3245 3194 203 195 91 13 chr13 18499316 18499393 -101245505 + (CATCC)n Simple_repeat Simple_repeat 3 85 0 362 293 9 0 chr13 18500227 18500404 -101244494 + L1ME4a LINE L1 5256 5436 -806 330 222 89 22 chr13 18500504 18500594 -101244304 + L1ME3A LINE L1 6065 6160 -10 2552 48 0 0 chr13 18500632 18500943 -101243955 + AluY SINE Alu 1 311 0 443 260 54 99 chr13 18500954 18501398 -101243500 + L1ME4a LINE L1 5440 5869 -252 4204 109 15 28 chr13 18501592 18502198 -101242700 - L1PA15 LINE L1 0 6165 5566 2375 42 0 3 chr13 18502198 18502486 -101242412 - AluY SINE Alu -7 304 18 4204 109 15 28 chr13 18502486 18502533 -101242365 - L1PA15 LINE L1 -599 5566 5520 1267 157 39 11 chr13 18502727 18503007 -101241891 + MER33 DNA MER1_type 29 316 -8 359 219 61 0 chr13 18503271 18503353 -101241545 - HsTC2 DNA Tc2 -1811 87 1 406 333 76 19 chr13 18503483 18503693 -101241205 + MIR SINE MIR 17 238 -24 360 161 192 77 chr13 18504083 18504253 -101240645 - LTR50 LTR ERVL 0 795 586 230 200 17 17 chr13 18504516 18504576 -101240322 - LTR50 LTR ERVL -731 64 5 198 0 0 0 chr13 18504778 18504800 -101240098 + (TG)n Simple_repeat Simple_repeat 2 23 0 377 183 0 0 chr13 18504931 18505002 -101239896 + T-rich Low_complexity Low_complexity 1 71 0 346 295 28 10 chr13 18505005 18505301 -101239597 + CT-rich Low_complexity Low_complexity 1 301 0 970 104 7 0 chr13 18505515 18505650 -101239248 - AluSq/x SINE Alu -176 136 1 1221 228 48 95 chr13 18505661 18505822 -101239076 - L1MA9 LINE L1 -45 6267 6100 1576 171 3 53 chr13 18505822 18506143 -101238755 + AluJb SINE Alu 1 305 -7 1221 228 48 95 chr13 18506143 18506499 -101238399 - L1MA9 LINE L1 -212 6100 5774 2943 213 134 49 chr13 18506505 18507534 -101237364 + L1M4 LINE L1 4025 5171 -975 1624 195 13 3 chr13 18507534 18507841 -101237057 + AluJo SINE Alu 1 310 -2 2943 213 134 49 chr13 18507841 18508004 -101236894 + L1M4 LINE L1 5171 5319 -827 1771 84 0 0 chr13 18508004 18508231 -101236667 + AluSc SINE Alu 39 265 -44 417 227 191 43 chr13 18508326 18508604 -101236294 + LTR50 LTR ERVL 460 778 -17 567 194 15 37 chr13 18509015 18509149 -101235749 + FLAM_C SINE Alu 1 131 -2 1242 121 56 39 chr13 18509166 18509397 -101235501 - LTR12 LTR ERV1 0 714 480 265 303 10 0 chr13 18509397 18509496 -101235402 - LTR30 LTR ERV1 -79 643 544 1416 73 232 0 chr13 18509501 18509721 -101235177 - LTR12 LTR ERV1 -442 272 2 933 75 82 0 chr13 18509721 18509855 -101235043 + AluYa5 SINE Alu 145 289 -22 324 0 0 0 chr13 18509859 18509895 -101235003 + (TAAA)n Simple_repeat Simple_repeat 3 38 0 521 310 81 44 chr13 18510164 18510469 -101234429 + L1MC4 LINE L1 6293 6585 -1307 2337 66 3 0 chr13 18510469 18510771 -101234127 + AluY SINE Alu 1 303 -8 1552 174 0 57 chr13 18510772 18510909 -101233989 + AluJo SINE Alu 1 144 -168 1909 138 14 0 chr13 18510909 18511205 -101233693 + AluSp SINE Alu 1 300 -13 1552 174 0 57 chr13 18511205 18511384 -101233514 + AluJo SINE Alu 144 299 -13 521 310 81 44 chr13 18511384 18511638 -101233260 + L1MC4 LINE L1 6584 6961 -931 1989 90 41 14 chr13 18512060 18512350 -101232548 - AluSp SINE Alu -14 299 2 2054 82 11 11 chr13 18512364 18512664 -101232234 - AluY SINE Alu 0 300 1 219 286 14 14 chr13 18513015 18513085 -101231813 - MIR SINE MIR -122 140 71 1766 140 7 29 chr13 18513123 18513431 -101231467 + AluJo SINE Alu 3 303 -9 279 326 20 31 chr13 18513527 18513625 -101231273 - L2 LINE L2 -27 3245 3149 1505 151 0 0 chr13 18513663 18513901 -101230997 + AluSx SINE Alu 64 301 -11 4741 123 48 15 chr13 18513901 18514558 -101230340 - L1MC1 LINE L1 -207 6126 5439 2198 94 7 7 chr13 18514558 18514867 -101230031 - AluSx SINE Alu -3 309 1 4741 123 48 15 chr13 18514867 18514959 -101229939 - L1MC1 LINE L1 -894 5439 5352 216 0 0 0 chr13 18515238 18515262 -101229636 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 1899 118 23 33 chr13 18515299 18515604 -101229294 - AluSq SINE Alu -11 302 1 2264 65 16 26 chr13 18515638 18515948 -101228950 - AluY SINE Alu -4 307 1 1485 185 38 3 chr13 18516262 18516554 -101228344 - AluSg SINE Alu -8 302 1 2382 77 0 6 chr13 18516564 18516876 -101228022 - AluY SINE Alu -1 310 1 295 116 0 0 chr13 18516922 18516965 -101227933 - LTR50 LTR ERVL -752 43 1 1466 183 69 25 chr13 18517059 18517307 -101227591 - MER58B DNA MER1_type -2080 340 74 2372 139 31 0 chr13 18517307 18517659 -101227239 - THE1B LTR MaLR -1 363 1 1466 183 69 25 chr13 18517659 18517727 -101227171 - MER58B DNA MER1_type -2346 74 10 2043 93 3 33 chr13 18518188 18518282 -101226616 + AluSp SINE Alu 1 96 -217 3098 112 37 19 chr13 18518282 18518766 -101226132 + LTR15 LTR ERV1 1 493 0 2043 93 3 33 chr13 18518766 18518973 -101225925 + AluSp SINE Alu 96 293 -20 21 57 0 0 chr13 18519049 18519084 -101225814 + AT_rich Low_complexity Low_complexity 1 35 0 1598 195 16 0 chr13 18520002 18520309 -101224589 - AluJo SINE Alu 0 312 1 614 275 23 94 chr13 18520704 18520760 -101224138 - L2 LINE L2 -4 3309 3251 1025 157 23 56 chr13 18520760 18520906 -101223992 + MER3 DNA MER1_type 1 139 -70 2191 87 0 0 chr13 18520906 18521194 -101223704 + AluSc SINE Alu 1 288 -21 1025 157 23 56 chr13 18521194 18521263 -101223635 + MER3 DNA MER1_type 139 209 0 614 275 23 94 chr13 18521263 18521515 -101223383 - L2 LINE L2 -62 3251 3023 571 289 67 53 chr13 18522154 18522229 -101222669 + MIR SINE MIR 14 87 -175 1969 136 10 3 chr13 18522229 18522539 -101222359 - AluSx SINE Alu 0 312 1 571 289 67 53 chr13 18522539 18522688 -101222210 + MIR SINE MIR 87 241 -21 1477 166 19 63 chr13 18523197 18523516 -101221382 + AluJo SINE Alu 1 305 -7 246 208 0 0 chr13 18523516 18523569 -101221329 + GA-rich Low_complexity Low_complexity 1 53 0 1868 153 0 7 chr13 18523990 18524298 -101220600 - AluSq SINE Alu -7 306 1 309 253 11 35 chr13 18524942 18525029 -101219869 - MIR SINE MIR -3 259 175 1017 113 0 13 chr13 18525729 18525888 -101219010 + AluSg/x SINE Alu 154 310 0 1973 121 7 3 chr13 18525908 18526197 -101218701 + AluSx SINE Alu 12 301 -11 290 180 0 20 chr13 18527201 18527251 -101217647 + tRNA-Arg-AGG tRNA tRNA 2 50 -26 4239 134 51 25 chr13 18527635 18528186 -101216712 + L1MB3 LINE L1 5393 5971 -212 2013 117 0 3 chr13 18528186 18528476 -101216422 + AluSx SINE Alu 1 289 -23 4239 134 51 25 chr13 18528476 18528692 -101216206 + L1MB3 LINE L1 5971 6180 -3 516 229 18 0 chr13 18528831 18528940 -101215958 + MER45 DNA AcHobo 1 111 -929 1873 130 3 17 chr13 18528942 18529284 -101215614 - AluJb SINE Alu 0 312 1 496 232 155 32 chr13 18529732 18529887 -101215011 - L1MEd LINE L1 -5511 608 435 1994 135 0 0 chr13 18530292 18530595 -101214303 + AluSx SINE Alu 1 303 -9 2911 187 27 19 chr13 18532422 18532753 -101212145 + L1MB2 LINE L1 5511 5851 -320 1761 114 0 11 chr13 18532753 18533015 -101211883 - AluSx SINE Alu -53 259 1 2911 187 27 19 chr13 18533015 18533310 -101211588 + L1MB2 LINE L1 5851 6142 -29 240 256 24 49 chr13 18533459 18533541 -101211357 + HAL1 LINE L1 27 106 -2401 808 129 0 25 chr13 18533544 18533776 -101211122 + AluJb SINE Alu 2 299 -13 226 301 7 35 chr13 18534168 18534311 -101210587 + (CA)n Simple_repeat Simple_repeat 1 139 0 2411 176 9 12 chr13 18535003 18535424 -101209474 + LOR1b LTR ERV1 42 461 0 247 208 181 0 chr13 18535425 18535497 -101209401 - MIR SINE MIR -86 176 92 2427 61 0 10 chr13 18536559 18536853 -101208045 + AluY SINE Alu 1 291 -20 2129 101 0 11 chr13 18538482 18538769 -101206129 - AluSx SINE Alu -2 310 27 2158 133 0 3 chr13 18539263 18539572 -101205326 + AluSx SINE Alu 1 308 -4 1140 263 185 2 chr13 18540848 18541410 -101203488 - L2 LINE L2 -826 2488 1824 326 169 31 0 chr13 18541410 18541475 -101203423 + L1MC5 LINE L1 7327 7393 -568 818 139 0 0 chr13 18541479 18541594 -101203304 + FLAM_C SINE Alu 1 115 -28 210 71 0 0 chr13 18541595 18541623 -101203275 + (GGGGA)n Simple_repeat Simple_repeat 1 28 0 1346 199 56 91 chr13 18541624 18542162 -101202736 + L1MC5 LINE L1 7395 7913 -48 294 253 148 50 chr13 18542174 18542376 -101202522 - L2 LINE L2 -1478 1836 1615 2426 71 7 0 chr13 18542822 18543192 -101201706 + AluY SINE Alu 1 372 0 2100 129 0 7 chr13 18544066 18544361 -101200537 + AluSx SINE Alu 1 293 -19 2473 134 37 32 chr13 18545086 18545495 -101199403 - MSTB1 LTR MaLR -14 418 8 193 242 176 11 chr13 18545912 18546003 -101198895 - MIR3 SINE MIR -92 116 11 1694 129 0 0 chr13 18546858 18547082 -101197816 - AluSg/x SINE Alu -17 293 70 376 243 97 14 chr13 18547445 18547589 -101197309 - L1ME LINE L1 -592 5574 5419 363 86 17 17 chr13 18548215 18548273 -101196625 - FRAM SINE Alu -69 97 40 2146 128 3 6 chr13 18548278 18548591 -101196307 - AluSx SINE Alu 0 312 1 1849 237 61 19 chr13 18548592 18549166 -101195732 - L1ME LINE L1 -1040 5106 4509 5472 213 71 68 chr13 18549453 18550064 -101194834 - L1ME LINE L1 -1605 4541 3933 2438 66 0 10 chr13 18550064 18550367 -101194531 + AluY SINE Alu 1 300 -11 5472 213 71 68 chr13 18550367 18551794 -101193104 - L1ME LINE L1 -2213 3933 2497 22 103 0 0 chr13 18551794 18551872 -101193026 + AT_rich Low_complexity Low_complexity 1 78 0 401 215 21 0 chr13 18551901 18551994 -101192904 - L1MC1 LINE L1 -17 6316 6222 2221 145 43 0 chr13 18553291 18553683 -101191215 + L1MA4A LINE L1 5884 6292 -11 608 269 22 97 chr13 18553993 18554261 -101190637 - MIR SINE MIR -7 255 8 1628 172 109 32 chr13 18554357 18554759 -101190139 + L1MC3 LINE L1 6701 7133 -652 1973 98 0 0 chr13 18554859 18555105 -101189793 - AluSx SINE Alu -64 248 3 1189 156 161 8 chr13 18555868 18556111 -101188787 + AluJb SINE Alu 1 280 -32 257 263 0 66 chr13 18556121 18556197 -101188701 + (TG)n Simple_repeat Simple_repeat 2 72 0 2431 65 3 0 chr13 18556274 18556567 -101188331 - AluSp SINE Alu -19 294 1 287 258 151 0 chr13 18557157 18557250 -101187648 + MIR SINE MIR 48 154 -108 254 186 139 23 chr13 18558535 18558621 -101186277 + L1ME LINE L1 5373 5468 -2340 1136 143 25 20 chr13 18558954 18559157 -101185741 + AluJo SINE Alu 17 220 -92 330 87 0 0 chr13 18559200 18559246 -101185652 + (TG)n Simple_repeat Simple_repeat 2 47 0 943 145 76 47 chr13 18559309 18559481 -101185417 + AluJo SINE Alu 120 296 -16 2405 68 31 0 chr13 18559483 18559777 -101185121 + AluY SINE Alu 1 303 -8 582 250 118 20 chr13 18559804 18560008 -101184890 + LTR40a LTR ERVL 296 519 0 350 284 80 0 chr13 18560012 18560187 -101184711 + L1ME LINE L1 5591 5738 -383 1469 282 87 25 chr13 18560202 18560883 -101184015 + L1MEc LINE L1 40 762 -5634 1601 191 13 19 chr13 18560942 18561257 -101183641 + MLT1A1 LTR MaLR 51 363 -2 1581 182 62 46 chr13 18561257 18561684 -101183214 + L1M4 LINE L1 4865 5303 -843 2210 112 7 0 chr13 18561684 18561979 -101182919 - AluSq SINE Alu -16 297 1 1581 182 62 46 chr13 18561979 18562052 -101182846 + L1M4 LINE L1 5303 5373 -773 4648 144 28 35 chr13 18562355 18562842 -101182056 + L1MB2 LINE L1 5286 5775 -396 2027 122 43 45 chr13 18562842 18563066 -101181832 + THE1C LTR MaLR 1 225 -150 2209 118 3 7 chr13 18563066 18563372 -101181526 + AluSq SINE Alu 1 305 -8 2027 122 43 45 chr13 18563372 18563523 -101181375 + THE1C LTR MaLR 225 375 0 4648 144 28 35 chr13 18563523 18563876 -101181022 + L1MB2 LINE L1 5775 6122 -49 2149 146 0 0 chr13 18563876 18564184 -101180714 + AluSx SINE Alu 1 308 -4 4648 144 28 35 chr13 18564184 18564225 -101180673 + L1MB2 LINE L1 6122 6162 -9 1290 204 168 127 chr13 18564232 18564731 -101180167 + L1ME1 LINE L1 5318 5795 -371 2022 133 0 0 chr13 18564731 18565009 -101179889 + AluSx SINE Alu 1 278 -34 273 57 0 0 chr13 18565011 18565046 -101179852 + (CA)n Simple_repeat Simple_repeat 2 36 0 1290 204 168 127 chr13 18565046 18565118 -101179780 + L1ME1 LINE L1 5795 5863 -303 2475 90 0 0 chr13 18565118 18565428 -101179470 + AluY SINE Alu 2 311 0 1290 204 168 127 chr13 18565428 18565626 -101179272 + L1ME1 LINE L1 5863 6123 -43 * 1932 251 88 59 chr13 18565613 18565815 -101179083 + L1M4 LINE L1 2921 3116 -3030 2216 95 0 0 chr13 18565815 18566089 -101178809 + AluSc SINE Alu 1 274 -35 2567 157 16 40 chr13 18566091 18566595 -101178303 - LTR22B LTR ERVK 0 492 1 1932 251 88 59 chr13 18566595 18567328 -101177570 + L1M4 LINE L1 3116 3887 -2259 938 144 0 0 chr13 18567331 18567463 -101177435 + AluSc SINE Alu 1 132 -177 1668 78 0 5 chr13 18567592 18567797 -101177101 - AluY SINE Alu -107 204 1 1640 140 18 42 chr13 18567819 18568104 -101176794 + AluJo SINE Alu 13 290 -22 370 192 39 13 chr13 18568256 18568334 -101176564 - Tigger4(Zombi) DNA MER2_type 0 2731 2652 2283 96 20 0 chr13 18568336 18568628 -101176270 + AluSq SINE Alu 1 298 -15 2391 74 0 0 chr13 18568672 18568968 -101175930 + AluY SINE Alu 1 296 -15 5227 97 34 10 chr13 18568968 18569764 -101175134 + LOR1-int LTR ERV1 4707 5524 -2596 1181 104 29 0 chr13 18569763 18569936 -101174962 + LOR1-int LTR ERV1 5809 5986 -2134 * 483 273 33 11 chr13 18570056 18570239 -101174659 - AluSp SINE Alu -124 189 3 3641 88 50 47 chr13 18570244 18570868 -101174030 - LOR1-int LTR ERV1 -3407 4713 4088 348 131 40 46 chr13 18570885 18571060 -101173838 + (TG)n Simple_repeat Simple_repeat 2 175 0 231 122 55 66 chr13 18571090 18571271 -101173627 + (TG)n Simple_repeat Simple_repeat 1 179 0 914 100 27 0 chr13 18571271 18571421 -101173477 - LOR1-int LTR ERV1 -4482 3638 3485 342 156 54 18 chr13 18571434 18571601 -101173297 + (TG)n Simple_repeat Simple_repeat 2 174 0 318 162 60 12 chr13 18571615 18571782 -101173116 + (TG)n Simple_repeat Simple_repeat 1 175 0 314 112 78 9 chr13 18571843 18571959 -101172939 + (TG)n Simple_repeat Simple_repeat 2 125 0 239 306 97 15 chr13 18572236 18572370 -101172528 + L1ME LINE L1 5678 5822 -348 2278 99 0 0 chr13 18572402 18572696 -101172202 - AluY SINE Alu -17 294 1 1742 104 4 0 chr13 18572988 18573228 -101171670 + AluSx SINE Alu 1 241 -71 700 153 113 20 chr13 18573256 18573406 -101171492 + MER1B DNA MER1_type 1 164 -133 22 35 0 0 chr13 18573882 18573911 -101170987 + AT_rich Low_complexity Low_complexity 1 29 0 1722 136 0 28 chr13 18574144 18574430 -101170468 + AluSx SINE Alu 31 308 -4 30 0 0 0 chr13 18574619 18574649 -101170249 + AT_rich Low_complexity Low_complexity 1 30 0 501 135 0 0 chr13 18625709 18625783 -101119115 - AluS SINE Alu -239 74 1 720 291 51 22 chr13 18625874 18626451 -101118447 - L1MEc LINE L1 -3687 3254 2701 322 189 0 78 chr13 18626462 18626552 -101118346 - L1MEc LINE L1 -5194 1737 1655 265 279 64 17 chr13 18626554 18626726 -101118172 - L1MEc LINE L1 -4963 1460 1281 739 240 56 0 chr13 18626744 18626940 -101117958 - MER3 DNA MER1_type 0 209 3 356 292 125 14 chr13 18627550 18627717 -101117181 - MIR SINE MIR -63 145 11 926 187 155 5 chr13 18628843 18629030 -101115868 - MER58A DNA MER1_type -9 215 1 23 33 0 0 chr13 18629309 18629339 -101115559 + AT_rich Low_complexity Low_complexity 1 30 0 354 143 0 16 chr13 18629997 18630060 -101114838 - HsTC2 DNA Tc2 -13 1885 1824 284 216 40 27 chr13 18630060 18630134 -101114764 + L1ME2 LINE L1 6031 6105 -59 28 71 0 0 chr13 18630134 18630190 -101114708 + AT_rich Low_complexity Low_complexity 1 56 0 1967 156 0 0 chr13 18630702 18630990 -101113908 - AluSx SINE Alu -19 293 6 527 289 228 0 chr13 18631480 18631677 -101113221 - MIR SINE MIR 0 262 21 21 89 0 0 chr13 18631722 18631778 -101113120 + AT_rich Low_complexity Low_complexity 1 56 0 766 255 109 73 chr13 18631927 18631993 -101112905 - MLT1L LTR MaLR 0 615 553 2039 126 3 16 chr13 18631993 18632302 -101112596 + AluJo SINE Alu 1 305 -7 766 255 109 73 chr13 18632302 18632686 -101112212 - MLT1L LTR MaLR -62 553 149 1000 175 7 0 chr13 18633387 18633541 -101111357 + FAM SINE Alu 1 155 -30 2106 114 3 28 chr13 18633542 18633859 -101111039 - AluSx SINE Alu -3 309 1 1520 166 0 51 chr13 18634027 18634358 -101110540 + AluJo SINE Alu 1 316 0 827 141 0 59 chr13 18635592 18635727 -101109171 + AluJo/FLAM SINE Alu 1 127 -185 2386 61 0 7 chr13 18635730 18636023 -101108875 + AluY SINE Alu 1 291 -20 24 0 0 0 chr13 18636023 18636047 -101108851 + AT_rich Low_complexity Low_complexity 1 24 0 2694 194 51 27 chr13 18638971 18639469 -101105429 + L1MB8 LINE L1 5450 5972 -206 2215 114 0 0 chr13 18639469 18639766 -101105132 + AluSx SINE Alu 1 297 -15 2694 194 51 27 chr13 18639766 18639979 -101104919 + L1MB8 LINE L1 5972 6178 0 212 321 71 24 chr13 18640344 18640428 -101104470 + MIR3 SINE MIR 99 186 -22 1933 133 14 0 chr13 18640592 18640877 -101104021 - AluSx SINE Alu -10 302 14 2151 130 0 0 chr13 18640988 18641280 -101103618 + AluSg SINE Alu 1 292 -18 1276 90 12 0 chr13 18641623 18641789 -101103109 + AluSq SINE Alu 133 300 -13 579 199 209 71 chr13 18641803 18641999 -101102899 + MIR SINE MIR 5 227 -35 2038 137 0 10 chr13 18641999 18642298 -101102600 + AluJb SINE Alu 1 296 -16 487 224 19 19 chr13 18642298 18642405 -101102493 + AluJb SINE Alu 135 241 -71 1058 181 8 63 chr13 18642413 18642651 -101102247 + AluJo SINE Alu 85 309 -3 23 68 0 0 chr13 18642685 18642729 -101102169 + AT_rich Low_complexity Low_complexity 1 44 0 1767 184 0 3 chr13 18643057 18643359 -101101539 + AluJb SINE Alu 1 301 0 36 87 0 0 chr13 18643515 18643607 -101101291 + AT_rich Low_complexity Low_complexity 1 92 0 1772 226 34 36 chr13 18644023 18644493 -101100405 - MER21B LTR ERV1 -202 661 193 1002 223 89 81 chr13 18644496 18644979 -101099919 + L1MDa LINE L1 492 1074 -5466 2150 138 0 6 chr13 18644983 18645294 -101099604 + AluSx SINE Alu 2 310 -2 1887 145 44 7 chr13 18647858 18648155 -101096743 + AluSg SINE Alu 1 308 -2 366 339 6 28 chr13 18648345 18648567 -101096331 + G-rich Low_complexity Low_complexity 1 216 0 1966 128 40 10 chr13 18649101 18649398 -101095500 - AluSx SINE Alu -6 306 1 1085 76 0 0 chr13 18649401 18649533 -101095365 - AluY SINE Alu -179 132 1 255 287 14 77 chr13 18649567 18649710 -101095188 - MER5A DNA MER1_type -21 168 35 507 225 47 16 chr13 18649740 18649869 -101095029 + MER5B DNA MER1_type 17 149 -29 197 324 14 14 chr13 18649951 18650022 -101094876 - MER5B DNA MER1_type -87 91 21 2155 93 0 4 chr13 18650163 18650441 -101094457 - AluY SINE Alu -6 305 29 1553 251 68 38 chr13 18650741 18651758 -101093140 - L1ME3A LINE L1 -213 5957 4724 1071 193 51 77 chr13 18651759 18651876 -101093022 + MLT1A1 LTR MaLR 1 120 -245 1581 88 5 5 chr13 18651876 18652091 -101092807 - AluSc SINE Alu -8 301 87 1071 193 51 77 chr13 18652091 18652370 -101092528 + MLT1A1 LTR MaLR 120 405 40 221 0 35 0 chr13 18652370 18652399 -101092499 + (TTTTG)n Simple_repeat Simple_repeat 3 32 0 1846 153 0 4 chr13 18652399 18652680 -101092218 - AluSx SINE Alu -32 280 1 1071 193 51 77 chr13 18652680 18652719 -101092179 + MLT1A1 LTR MaLR 322 360 -5 384 243 56 0 chr13 18652722 18652829 -101092069 - L1ME3A LINE L1 -1417 4729 4617 279 0 0 0 chr13 18652840 18652871 -101092027 + (A)n Simple_repeat Simple_repeat 1 31 0 2147 186 34 5 chr13 18652899 18653345 -101091553 - L1MC1 LINE L1 -9 6258 5800 892 151 73 28 chr13 18653348 18653527 -101091371 - MER46A DNA MER2_type -4 232 46 4018 204 25 16 chr13 18653538 18654787 -101090111 - L1MC1 LINE L1 -562 5705 4440 2233 75 4 7 chr13 18654787 18655088 -101089810 - AluY SINE Alu 0 300 1 4018 204 25 16 chr13 18655088 18655319 -101089579 - L1MC1 LINE L1 -1827 4440 4213 403 254 167 4 chr13 18655307 18655535 -101089363 - L1MC1 LINE L1 -3275 2805 2541 * 935 154 77 16 chr13 18655541 18655723 -101089175 - MER21B LTR ERV1 -364 499 307 715 118 133 0 chr13 18655797 18655932 -101088966 - MER21A LTR ERV1 -778 153 1 569 159 45 89 chr13 18655932 18656089 -101088809 - MER21A-int LTR ERV1 0 4191 4042 1348 148 70 0 chr13 18656106 18656376 -101088522 - L1MA8 LINE L1 -22 6269 5981 405 288 93 0 chr13 18656518 18656636 -101088262 + MIR SINE MIR 110 238 -24 32 75 0 0 chr13 18657274 18657341 -101087557 + AT_rich Low_complexity Low_complexity 1 67 0 2507 84 0 0 chr13 18657362 18657673 -101087225 - AluY SINE Alu 0 311 1 2425 98 0 3 chr13 18658761 18659067 -101085831 + AluSx SINE Alu 1 305 -7 276 318 31 0 chr13 18661616 18661745 -101083153 - L1MC1 LINE L1 -5936 134 2 735 148 39 23 chr13 18661884 18662012 -101082886 - FLAM_C SINE Alu -3 130 1 316 189 132 0 chr13 18662035 18662159 -101082739 - L1MEd LINE L1 -4739 1321 895 247 325 97 0 chr13 18662656 18662770 -101082128 - MIR3 SINE MIR -2 206 82 1777 159 31 3 chr13 18663183 18663472 -101081426 + AluJb SINE Alu 6 302 -10 995 112 22 39 chr13 18664467 18664646 -101080252 - THE1C LTR MaLR 0 375 200 258 267 36 67 chr13 18664644 18664809 -101080089 - LTR16A LTR ERVL -228 222 63 * 378 224 95 20 chr13 18665154 18665301 -101079597 - MLT1H LTR MaLR 0 549 392 2084 108 0 69 chr13 18665736 18666069 -101078829 + AluSx SINE Alu 1 310 -2 3471 75 37 0 chr13 18666116 18666597 -101078301 - L1PA4 LINE L1 0 6155 5657 2097 61 0 41 chr13 18666932 18667227 -101077671 + L1PA8 LINE L1 5887 6169 -3 232 237 52 41 chr13 18668020 18668117 -101076781 - MLT1-int LTR MaLR -1269 102 5 2550 159 61 10 chr13 18668130 18668619 -101076279 + L1MB7 LINE L1 5671 6184 0 269 235 103 7 chr13 18668619 18668749 -101076149 - MLT2E LTR ERVL -14 614 472 802 243 35 31 chr13 18668877 18669132 -101075766 - MLT2E LTR ERVL -353 275 20 305 349 105 0 chr13 18669992 18670164 -101074734 - L1MC/D LINE L1 -2174 5634 5445 636 242 144 43 chr13 18670446 18670814 -101074084 - HAL1 LINE L1 -1514 993 589 307 270 138 20 chr13 18670816 18670968 -101073930 - L2 LINE L2 -231 3082 2913 2156 121 0 3 chr13 18671094 18671392 -101073506 - AluSx SINE Alu -4 308 12 318 265 114 58 chr13 18671469 18671603 -101073295 - L1MC/D LINE L1 -1065 5081 4956 2349 57 7 4 chr13 18671603 18671925 -101072973 + AluY SINE Alu 1 323 0 318 265 114 58 chr13 18671925 18672132 -101072766 - L1MC/D LINE L1 -1190 4956 4721 1937 152 0 7 chr13 18672176 18672472 -101072426 + AluJb SINE Alu 1 294 -18 2160 108 10 0 chr13 18673633 18673921 -101070977 + AluSx SINE Alu 1 291 -21 1797 130 41 0 chr13 18674879 18675169 -101069729 - AluSx SINE Alu 0 301 1 773 189 0 0 chr13 18675211 18675338 -101069560 + FLAM_C SINE Alu 1 127 -16 1729 167 7 7 chr13 18675354 18675664 -101069234 + AluSx SINE Alu 11 312 0 2378 81 3 3 chr13 18676209 18676516 -101068382 - AluSq SINE Alu -6 307 1 204 163 0 23 chr13 18676523 18676566 -101068332 + T-rich Low_complexity Low_complexity 4 45 0 26 30 0 0 chr13 18676756 18676789 -101068109 + AT_rich Low_complexity Low_complexity 1 33 0 240 335 45 53 chr13 18677293 18677423 -101067475 + L2 LINE L2 707 836 -2478 2198 90 0 68 chr13 18677423 18677744 -101067154 - AluSx SINE Alu -13 299 1 240 335 45 53 chr13 18677744 18678010 -101066888 + L2 LINE L2 836 1100 -2214 1764 191 33 15 chr13 18678825 18679186 -101065712 + L1M4c LINE L1 1227 1597 -4787 186 43 0 0 chr13 18679186 18679209 -101065689 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 1764 191 33 15 chr13 18679209 18679240 -101065658 + L1M4c LINE L1 1597 1626 -4758 2149 125 3 0 chr13 18679241 18679545 -101065353 + AluSx SINE Alu 1 305 -7 6832 235 39 17 chr13 18679545 18682028 -101062870 + L1M4c LINE L1 2125 4666 -1716 1653 203 29 7 chr13 18682077 18682495 -101062403 - L1M4 LINE L1 -1272 4874 4448 2096 156 60 24 chr13 18682664 18682738 -101062160 + L1MB4 LINE L1 5705 5775 -405 1519 158 131 0 chr13 18682738 18683036 -101061862 + MER44D DNA MER2_type 1 607 -2 2096 156 60 24 chr13 18683036 18683415 -101061483 + L1MB4 LINE L1 5775 6174 -6 345 171 11 34 chr13 18683426 18683514 -101061384 + L1MB8 LINE L1 6093 6178 0 1402 199 81 0 chr13 18683526 18683798 -101061100 + AluJb SINE Alu 2 295 -17 300 190 70 60 chr13 18683800 18683900 -101060998 + L1ME3A LINE L1 5901 6001 -169 220 206 270 16 chr13 18684317 18684380 -101060518 - MIR SINE MIR -151 111 33 1024 105 0 0 chr13 18686430 18686563 -101058335 - AluSq/x SINE Alu -180 133 1 978 207 0 6 chr13 18686732 18686906 -101057992 + FAM SINE Alu 2 174 -1 1564 122 5 0 chr13 18687638 18687851 -101057047 - AluSg/x SINE Alu -22 288 75 821 138 0 0 chr13 18688381 18688497 -101056401 + AluSq/x SINE Alu 1 116 -197 324 0 0 0 chr13 18688498 18688534 -101056364 + (TAAA)n Simple_repeat Simple_repeat 2 37 0 1543 174 60 3 chr13 18688834 18689116 -101055782 - AluSq SINE Alu -15 298 1 896 234 9 14 chr13 18689337 18689551 -101055347 - MER20 DNA MER1_type -1 218 6 1557 205 21 0 chr13 18689947 18690235 -101054663 + AluJo SINE Alu 1 294 -18 2314 96 0 0 chr13 18690384 18690677 -101054221 - AluSg SINE Alu -17 293 1 1142 288 81 36 chr13 18690727 18691603 -101053295 - L2 LINE L2 -26 3287 2287 275 327 98 72 chr13 18691785 18692131 -101052767 - L2 LINE L2 -55 3217 2863 2132 112 3 7 chr13 18692189 18692485 -101052413 + AluSg SINE Alu 1 295 -15 257 322 39 17 chr13 18692570 18692750 -101052148 + HAL1 LINE L1 223 406 -2101 1441 96 0 0 chr13 18692837 18693045 -101051853 + L1P3 LINE L1 1084 1291 -5170 1683 66 0 0 chr13 18693049 18693277 -101051621 + L1P LINE L1 3500 3727 -2419 27 62 0 0 chr13 18693379 18693427 -101051471 + AT_rich Low_complexity Low_complexity 1 48 0 285 228 0 0 chr13 18694707 18694764 -101050134 + MER5A DNA MER1_type 132 188 -1 2456 80 0 0 chr13 18695533 18695835 -101049063 + AluY SINE Alu 1 302 -9 253 352 26 0 chr13 18696879 18696967 -101047931 + MIR SINE MIR 59 146 -62 205 100 320 0 chr13 18696983 18697033 -101047865 - MER5C DNA MER1_type -5 319 254 199 320 120 0 chr13 18697096 18697196 -101047702 - MER5C DNA MER1_type -208 116 5 226 234 125 16 chr13 18697515 18697643 -101047255 - HAL1b LINE L1 -18 1330 1189 180 245 38 19 chr13 18698059 18698112 -101046786 - L2 LINE L2 -13 3259 3206 201 186 17 68 chr13 18698285 18698344 -101046554 + T-rich Low_complexity Low_complexity 6 61 0 1067 76 0 0 chr13 18698346 18698477 -101046421 - AluSg SINE Alu -179 131 1 368 219 0 0 chr13 18698481 18698563 -101046335 + MER69 DNA AcHobo 2443 2524 -2 253 380 53 12 chr13 18698606 18698777 -101046121 + L2 LINE L2 1789 1966 -1348 2337 90 0 7 chr13 18700160 18700459 -101044439 - AluSx SINE Alu -15 297 1 207 0 0 0 chr13 18701259 18701282 -101043616 + (T)n Simple_repeat Simple_repeat 1 23 0 437 299 47 0 chr13 18702657 18702784 -101042114 - L2 LINE L2 -1 3312 3180 840 212 161 20 chr13 18703333 18703625 -101041273 - MER46C DNA MER2_type -1 337 5 207 0 0 0 chr13 18705438 18705461 -101039437 + (TA)n Simple_repeat Simple_repeat 2 24 0 2283 66 49 0 chr13 18705461 18705748 -101039150 - AluY SINE Alu -10 301 1 1327 230 33 9 chr13 18706313 18706644 -101038254 - MER58B DNA MER1_type -2 339 1 528 241 43 0 chr13 18706997 18707138 -101037760 + MIR SINE MIR 92 238 -24 433 329 0 7 chr13 18707368 18707523 -101037375 + MARNA DNA Mariner 43 196 -390 219 246 0 0 chr13 18707561 18707618 -101037280 + (CATATA)n Simple_repeat Simple_repeat 4 60 0 339 325 31 19 chr13 18708769 18708929 -101035969 - L2 LINE L2 -1370 1944 1783 1794 194 54 71 chr13 18708982 18709502 -101035396 - MER9 LTR ERVK 0 511 1 23603 173 19 14 chr13 18709502 18714734 -101030164 - HERVK9 LTR ERVK 0 7321 1626 2979 165 35 54 chr13 18714730 18715643 -101029255 - HERVK9 LTR ERVK -5071 874 1 * 1927 186 58 44 chr13 18715643 18716147 -101028751 - MER9 LTR ERVK 0 511 1 242 221 174 62 chr13 18716244 18716324 -101028574 + L1MC/D LINE L1 5533 5603 -2205 2146 118 0 30 chr13 18716324 18716629 -101028269 + AluSx SINE Alu 1 296 -16 242 221 174 62 chr13 18716629 18716743 -101028155 + L1MC/D LINE L1 5603 5749 -2059 489 181 0 0 chr13 18717656 18717739 -101027159 - FRAM/FAM SINE Alu -94 82 1 243 0 0 0 chr13 18717758 18717785 -101027113 + (A)n Simple_repeat Simple_repeat 1 27 0 354 309 40 40 chr13 18718180 18718306 -101026592 + MIR SINE MIR 16 141 -67 318 294 35 12 chr13 18718412 18718497 -101026401 + L1MA4A LINE L1 834 920 -5929 12277 183 82 12 chr13 18718497 18718532 -101026366 + L1MA4A LINE L1 2081 2112 -4893 1492 130 123 53 chr13 18718532 18718816 -101026082 - AluSg SINE Alu -6 304 1 12277 183 82 12 chr13 18718816 18723362 -101021536 + L1MA4A LINE L1 2112 6982 -23 2001 250 127 49 chr13 18723357 18723723 -101021175 + HAL1 LINE L1 1171 1507 -1000 * 725 197 31 0 chr13 18723723 18723850 -101021048 - FLAM_A SINE Alu -2 131 1 2001 250 127 49 chr13 18723850 18724416 -101020482 + HAL1 LINE L1 1507 2220 -287 2141 133 3 3 chr13 18724416 18724724 -101020174 + AluSx SINE Alu 1 308 -4 2001 250 127 49 chr13 18724724 18724992 -101019906 + HAL1 LINE L1 2220 2466 -41 2358 58 7 3 chr13 18724992 18725287 -101019611 - AluY SINE Alu -15 296 1 368 219 0 0 chr13 18725291 18725373 -101019525 + MER69 DNA AcHobo 2443 2524 -2 253 380 53 12 chr13 18725416 18725587 -101019311 + L2 LINE L2 1789 1966 -1348 2269 97 0 10 chr13 18726970 18727270 -101017628 - AluSx SINE Alu -15 297 1 207 0 0 0 chr13 18728070 18728093 -101016805 + (T)n Simple_repeat Simple_repeat 1 23 0 437 299 47 0 chr13 18729468 18729595 -101015303 - L2 LINE L2 -1 3312 3180 370 200 13 0 chr13 18730144 18730219 -101014679 - MER46C DNA MER2_type -1 337 262 373 219 0 0 chr13 18730552 18730634 -101014264 - FRAM/FAM SINE Alu -85 81 1 234 0 0 0 chr13 18730654 18730680 -101014218 + (A)n Simple_repeat Simple_repeat 1 26 0 512 286 43 36 chr13 18731075 18731215 -101013683 + MIR3 SINE MIR 16 156 -52 253 254 0 0 chr13 18731352 18731407 -101013491 + A-rich Low_complexity Low_complexity 1 55 0 578 323 84 46 chr13 18731413 18731684 -101013214 + L1MEd LINE L1 102 361 -5758 2201 82 0 36 chr13 18731684 18731987 -101012911 + AluSq SINE Alu 1 292 -21 578 323 84 46 chr13 18731987 18732236 -101012662 + L1MEd LINE L1 361 642 -5477 23 33 0 0 chr13 18732346 18732376 -101012522 + AT_rich Low_complexity Low_complexity 1 30 0 804 227 18 0 chr13 18732376 18732539 -101012359 - AluJo SINE Alu -30 282 117 23 0 0 0 chr13 18732546 18732569 -101012329 + AT_rich Low_complexity Low_complexity 1 23 0 2181 109 3 0 chr13 18732569 18732862 -101012036 - AluSg SINE Alu -16 294 1 210 365 17 26 chr13 18733925 18734040 -101010858 - L3 LINE CR1 -81 1496 1383 234 237 129 11 chr13 18735100 18735193 -101009705 + MER112 DNA MER1_type 113 216 -44 214 278 83 30 chr13 18735631 18735764 -101009134 - L2 LINE L2 -32 3281 3142 * 308 333 57 0 chr13 18735731 18735854 -101009044 - L2 LINE L2 -11 3302 3173 2160 115 10 10 chr13 18735856 18736160 -101008738 - AluSg SINE Alu -6 304 1 1380 287 105 53 chr13 18736293 18737178 -101007720 - L2 LINE L2 -337 2977 2047 680 47 0 0 chr13 18737340 18737426 -101007472 - AluSg/x SINE Alu -8 301 216 2119 69 0 36 chr13 18737426 18737701 -101007197 - AluSg1 SINE Alu -44 265 1 2028 144 20 0 chr13 18738089 18738381 -101006517 + AluSx SINE Alu 1 298 -14 1826 144 30 4 chr13 18738572 18738843 -101006055 + AluJo SINE Alu 1 278 -34 1001 272 121 52 chr13 18738843 18738995 -101005903 + L1MCc LINE L1 1177 1317 -5805 2421 75 0 3 chr13 18738995 18739290 -101005608 + AluY SINE Alu 1 294 -17 1001 272 121 52 chr13 18739290 18740075 -101004823 + L1MCc LINE L1 1317 2427 -4695 2223 87 31 3 chr13 18740075 18740363 -101004535 + AluSx SINE Alu 1 296 -16 1001 272 121 52 chr13 18740363 18740633 -101004265 + L1MCc LINE L1 2427 2677 -4445 1784 205 50 44 chr13 18740727 18740759 -101004139 + L1MC4 LINE L1 7127 7157 -885 1881 180 0 0 chr13 18740759 18741065 -101003833 + AluJo SINE Alu 1 306 -6 1784 205 50 44 chr13 18741065 18741529 -101003369 + L1MC4 LINE L1 7157 7626 -416 1865 162 7 10 chr13 18741531 18741828 -101003070 + AluSx SINE Alu 1 296 -16 644 183 7 0 chr13 18741828 18741965 -101002933 + GA-rich Low_complexity Low_complexity 1 138 0 456 244 16 0 chr13 18741987 18742110 -101002788 + L1MC4 LINE L1 7608 7732 -310 437 202 36 0 chr13 18742116 18742200 -101002698 - Tigger5 DNA MER2_type 0 2323 2237 354 167 28 14 chr13 18742254 18742326 -101002572 - Tigger5 DNA MER2_type 0 2323 2251 243 226 19 0 chr13 18742296 18742349 -101002549 - Tigger5 DNA MER2_type -2268 55 2 * 951 215 98 7 chr13 18742351 18742638 -101002260 + L1MC4 LINE L1 7741 8041 -1 1039 190 0 0 chr13 18742645 18742819 -101002079 + FRAM SINE Alu 1 172 -4 402 237 20 33 chr13 18742822 18742974 -101001924 + L1MCc LINE L1 2837 2986 -4136 520 229 35 24 chr13 18743016 18743144 -101001754 + L1MCc LINE L1 2915 3047 -3894 1564 162 72 30 chr13 18743144 18743478 -101001420 + MER7A DNA MER2_type 1 346 0 520 229 35 24 chr13 18743478 18743519 -101001379 + L1MCc LINE L1 3047 3086 -3855 2102 134 3 13 chr13 18743532 18743838 -101001060 + AluSx SINE Alu 1 303 -9 657 327 153 12 chr13 18744026 18744655 -101000243 - L2 LINE L2 -1965 1349 573 2350 80 10 13 chr13 18744685 18744987 -100999911 - AluSg SINE Alu -9 301 1 202 306 116 16 chr13 18746568 18746689 -100998209 - L3 LINE CR1 -139 1438 1306 23 54 0 0 chr13 18747330 18747367 -100997531 + GC_rich Low_complexity Low_complexity 1 37 0 201 183 32 65 chr13 18747369 18747462 -100997436 + G-rich Low_complexity Low_complexity 3 92 0 31 82 0 0 chr13 18747511 18747584 -100997314 + GC_rich Low_complexity Low_complexity 1 73 0 38 61 0 0 chr13 18747672 18747738 -100997160 + GC_rich Low_complexity Low_complexity 1 66 0 305 223 33 12 chr13 18747942 18748193 -100996705 + (CGGGG)n Simple_repeat Simple_repeat 1 256 0 1742 168 10 7 chr13 18749061 18749353 -100995545 + AluJo SINE Alu 16 308 -4 210 321 179 28 chr13 18750123 18750335 -100994563 - L2 LINE L2 -849 2465 2222 1502 170 93 14 chr13 18750812 18751101 -100993797 + AluJb SINE Alu 1 312 0 1636 187 7 14 chr13 18751161 18751455 -100993443 - AluJb SINE Alu -20 292 1 2203 138 0 0 chr13 18751541 18751839 -100993059 - AluSx SINE Alu -10 302 5 306 332 108 13 chr13 18752032 18752348 -100992550 + L1MC4a LINE L1 4965 5310 -836 1653 92 176 44 chr13 18752348 18752621 -100992277 + AluSg1 SINE Alu 1 309 0 691 281 204 18 chr13 18752808 18753200 -100991698 + L1MC4a LINE L1 5495 5959 -1849 2421 80 0 46 chr13 18753962 18754287 -100990611 + AluSp SINE Alu 1 310 -3 681 186 106 53 chr13 18754545 18754613 -100990285 - MSTD LTR MaLR 0 396 333 2372 104 3 0 chr13 18754613 18754911 -100989987 + AluSp SINE Alu 1 299 -14 681 186 106 53 chr13 18754911 18755030 -100989868 - MSTD LTR MaLR -63 333 199 501 159 53 18 chr13 18755059 18755172 -100989726 - MSTD LTR MaLR -279 117 1 235 290 29 0 chr13 18755452 18755521 -100989377 + L1MC/D LINE L1 5713 5783 -2025 2308 86 3 7 chr13 18755936 18756228 -100988670 + AluSx SINE Alu 1 291 -21 526 194 31 0 chr13 18756507 18756636 -100988262 + CT-rich Low_complexity Low_complexity 4 136 0 219 271 4 4 chr13 18758074 18758148 -100986750 + MIR SINE MIR 79 153 -55 493 209 15 45 chr13 18758797 18758931 -100985967 + MER5B DNA MER1_type 8 137 -41 217 274 208 19 chr13 18759209 18759315 -100985583 - MER5A DNA MER1_type 0 189 64 1893 116 65 34 chr13 18759371 18759665 -100985233 - AluJb SINE Alu -9 303 1 247 319 0 14 chr13 18759665 18759737 -100985161 - MER5A DNA MER1_type -114 75 5 547 248 35 25 chr13 18759846 18760044 -100984854 - L1M4 LINE L1 -1379 4767 4568 247 289 158 9 chr13 18760158 18760272 -100984626 - MIR3 SINE MIR -46 162 32 349 363 0 11 chr13 18761972 18762151 -100982747 + (CACG)n Simple_repeat Simple_repeat 1 177 0 * 489 309 3 0 chr13 18762020 18762662 -100982236 + (CA)n Simple_repeat Simple_repeat 1 643 0 427 333 3 3 chr13 18762683 18763004 -100981894 + (CA)n Simple_repeat Simple_repeat 1 321 0 301 274 76 6 chr13 18762961 18763118 -100981780 + (CCCA)n Simple_repeat Simple_repeat 3 170 0 440 297 108 19 chr13 18763196 18763408 -100981490 - L1MC4a LINE L1 -2 7806 7576 183 282 51 39 chr13 18764277 18764355 -100980543 + L2 LINE L2 2420 2498 -816 2653 33 0 3 chr13 18767279 18767581 -100977317 - AluY SINE Alu -10 301 1 291 254 191 9 chr13 18768029 18768139 -100976759 + MIR SINE MIR 103 232 -30 2407 92 0 7 chr13 18768344 18768647 -100976251 + AluSq SINE Alu 1 301 -12 2171 88 3 63 chr13 18768647 18768964 -100975934 + AluSg SINE Alu 1 298 -12 2349 108 0 0 chr13 18770554 18770850 -100974048 - AluSq SINE Alu -12 301 6 1962 138 3 39 chr13 18771139 18771451 -100973447 - AluJb SINE Alu -11 301 1 1245 248 69 7 chr13 18771536 18771993 -100972905 - L1MD2 LINE L1 -12 6347 5835 293 295 67 9 chr13 18772407 18772512 -100972386 + MIR3 SINE MIR 90 200 -8 200 159 0 23 chr13 18773120 18773164 -100971734 + (CA)n Simple_repeat Simple_repeat 2 44 0 23 0 0 0 chr13 18773774 18773797 -100971101 + AT_rich Low_complexity Low_complexity 1 23 0 554 165 29 0 chr13 18774144 18774247 -100970651 - AluJ SINE Alu -17 295 190 258 231 0 0 chr13 18774250 18774302 -100970596 + LTR30 LTR ERV1 1 52 -670 2802 127 18 9 chr13 18774306 18774763 -100970135 + LTR12 LTR ERV1 123 583 -131 646 215 37 0 chr13 18774764 18774899 -100969999 - AluJ SINE Alu -125 187 48 430 213 11 11 chr13 18774952 18775046 -100969852 + FRAM SINE Alu 1 93 -83 235 354 0 0 chr13 18775109 18775188 -100969710 + MIR3 SINE MIR 82 160 -48 522 291 101 11 chr13 18775216 18775405 -100969493 - MIR SINE MIR 0 262 57 2292 93 7 10 chr13 18775966 18776267 -100968631 - AluSx SINE Alu -12 300 1 2430 96 0 0 chr13 18776729 18777030 -100967868 - AluSg SINE Alu -9 301 1 534 189 117 0 chr13 18777038 18777149 -100967749 - AluJb SINE Alu -188 124 1 315 262 139 25 chr13 18777149 18777271 -100967627 + L1MC4a LINE L1 5778 5913 -1895 380 260 38 46 chr13 18777710 18777927 -100966971 + L1MEc LINE L1 1854 2040 -4500 578 315 46 0 chr13 18777982 18778201 -100966697 + MIR SINE MIR 34 262 0 893 71 0 0 chr13 18778205 18778352 -100966546 - Alu SINE Alu 0 315 169 2038 276 131 21 chr13 18778545 18780345 -100964553 + HAL1 LINE L1 1 2023 -484 597 82 0 0 chr13 18780363 18780448 -100964450 - Alu SINE Alu -8 304 220 303 328 12 12 chr13 18780568 18780739 -100964159 + (CCCA)n Simple_repeat Simple_repeat 3 173 0 * 427 315 6 0 chr13 18780651 18780829 -100964069 + (CA)n Simple_repeat Simple_repeat 1 179 0 301 274 76 6 chr13 18780786 18780943 -100963955 + (CCCA)n Simple_repeat Simple_repeat 3 170 0 * 440 297 108 19 chr13 18781021 18781233 -100963665 - L1MC4a LINE L1 -2 7806 7576 183 282 51 39 chr13 18782101 18782179 -100962719 + L2 LINE L2 2420 2498 -816 2688 33 0 0 chr13 18785103 18785404 -100959494 - AluY SINE Alu -10 301 1 291 254 191 9 chr13 18785852 18785962 -100958936 + MIR SINE MIR 103 232 -30 2384 92 0 7 chr13 18786167 18786470 -100958428 + AluSq SINE Alu 1 301 -12 2133 76 3 66 chr13 18786470 18786772 -100958126 + AluSg SINE Alu 1 283 -27 2149 115 7 3 chr13 18788377 18788672 -100956226 - AluSq SINE Alu -12 301 6 1913 138 3 39 chr13 18788962 18789274 -100955624 - AluJb SINE Alu -11 301 1 228 167 379 0 chr13 18789279 18789345 -100955553 - MLT1I LTR MaLR -277 132 42 1281 224 71 0 chr13 18789359 18789685 -100955213 - L1MD2 LINE L1 -12 6347 5999 297 235 49 0 chr13 18789735 18789816 -100955082 - L1MD2 LINE L1 -440 5919 5835 272 295 67 9 chr13 18790229 18790334 -100954564 + MIR3 SINE MIR 90 200 -8 200 159 0 23 chr13 18790942 18790986 -100953912 + (CA)n Simple_repeat Simple_repeat 2 44 0 23 0 0 0 chr13 18791596 18791619 -100953279 + AT_rich Low_complexity Low_complexity 1 23 0 581 165 29 0 chr13 18791966 18792069 -100952829 - AluJ SINE Alu -17 295 190 259 231 0 0 chr13 18792072 18792124 -100952774 + LTR30 LTR ERV1 1 52 -670 2927 127 18 9 chr13 18792128 18792585 -100952313 + LTR12 LTR ERV1 123 583 -131 667 215 37 0 chr13 18792586 18792721 -100952177 - AluJ SINE Alu -125 187 48 442 213 11 11 chr13 18792774 18792868 -100952030 + FRAM SINE Alu 1 93 -83 224 354 0 0 chr13 18792931 18793010 -100951888 + MIR3 SINE MIR 82 160 -48 487 289 95 11 chr13 18793038 18793228 -100951670 - MIR SINE MIR 0 262 57 2269 93 7 10 chr13 18793791 18794092 -100950806 - AluSx SINE Alu -12 300 1 2410 92 0 3 chr13 18794554 18794858 -100950040 - AluSx SINE Alu -9 303 1 3952 200 78 33 chr13 18794859 18795117 -100949781 + L1MB7 LINE L1 4095 4340 -1844 1018 141 77 0 chr13 18795117 18795287 -100949611 + U2 snRNA snRNA 5 187 -1 3952 200 78 33 chr13 18795287 18796728 -100948170 + L1MB7 LINE L1 4340 5901 -283 395 81 242 0 chr13 18796728 18796790 -100948108 - MADE1 DNA Mariner 0 80 4 3952 200 78 33 chr13 18796790 18797088 -100947810 + L1MB7 LINE L1 5901 6184 0 562 221 58 0 chr13 18797085 18797239 -100947659 + L1M4 LINE L1 3758 3920 -2226 * 297 221 96 10 chr13 18797229 18797333 -100947565 - L1M4 LINE L1 -2154 3992 3880 * 1628 198 121 5 chr13 18797311 18797716 -100947182 + L1MD1 LINE L1 5783 6234 -8 2479 82 0 0 chr13 18797760 18798066 -100946832 - AluY SINE Alu -5 306 1 228 190 0 35 chr13 18798276 18798334 -100946564 - L1MC4 LINE L1 -1339 6703 6648 26 50 0 0 chr13 18798867 18798907 -100945991 + AT_rich Low_complexity Low_complexity 1 40 0 3061 175 30 25 chr13 18799041 18799631 -100945267 + MER7C DNA MER2_type 10 602 0 1385 141 77 12 chr13 18799631 18799878 -100945020 - Tigger3(Golem) DNA MER2_type -2744 285 23 1361 94 0 0 chr13 18799888 18800069 -100944829 - AluY SINE Alu -4 307 127 873 195 39 66 chr13 18801068 18801324 -100943574 + L1MC5 LINE L1 7176 7424 -537 1777 194 38 3 chr13 18801642 18801983 -100942915 + L1MB7 LINE L1 5730 6082 -102 4469 112 12 155 chr13 18801983 18803557 -100941341 - pTR5 LTR ERV1 0 2606 1524 493 53 11 117 chr13 18803565 18803594 -100941304 + L1MB7 LINE L1 6089 6119 -65 2161 107 3 3 chr13 18803594 18803885 -100941013 + AluSg SINE Alu 2 292 -18 493 53 11 117 chr13 18803885 18803949 -100940949 + L1MB7 LINE L1 6119 6172 -12 2409 91 3 0 chr13 18804527 18804823 -100940075 - AluSc SINE Alu -12 297 1 560 253 35 29 chr13 18805070 18805244 -100939654 - L1MC4 LINE L1 -2085 5723 5549 248 264 86 0 chr13 18805258 18805421 -100939477 - L1MC4 LINE L1 -725 5439 5263 1106 256 20 8 chr13 18805452 18805929 -100938969 + MER90 LTR ERV1 74 614 0 2111 139 0 16 chr13 18806120 18806436 -100938462 - AluSx SINE Alu -1 311 1 7303 95 8 6 chr13 18806736 18808565 -100936333 - L1PA8 LINE L1 0 6172 4340 2371 110 0 0 chr13 18808637 18808946 -100935952 + AluSg1 SINE Alu 1 309 0 2209 113 0 3 chr13 18809227 18809519 -100935379 - AluSg SINE Alu -19 291 1 2414 81 3 0 chr13 18810528 18810824 -100934074 - AluSx SINE Alu -7 305 9 2413 38 11 3 chr13 18811222 18811509 -100933389 + AluY SINE Alu 1 289 -22 1258 156 66 5 chr13 18811609 18811821 -100933077 - AluJb SINE Alu -3 309 85 588 230 15 50 chr13 18811823 18812023 -100932875 - L1MC4 LINE L1 -2091 4055 3863 639 140 5 10 chr13 18812029 18812294 -100932604 - AluJb SINE Alu 0 312 1 464 263 79 44 chr13 18812297 18812525 -100932373 - L1MC4 LINE L1 -2286 3860 3625 1314 193 60 60 chr13 18864044 18864198 -100880700 + MER58B DNA MER1_type 11 164 -2256 2273 110 0 0 chr13 18864198 18864498 -100880400 - AluSp SINE Alu -13 300 1 1314 193 60 60 chr13 18864498 18864674 -100880224 + MER58B DNA MER1_type 163 341 0 21 36 0 0 chr13 18865024 18865052 -100879846 + AT_rich Low_complexity Low_complexity 1 28 0 362 289 134 25 chr13 18865278 18865517 -100879381 - L2 LINE L2 -824 2490 2226 1907 223 60 10 chr13 18866822 18867319 -100877579 + Charlie1b DNA MER1_type 2 523 0 2026 111 19 26 chr13 18868417 18868724 -100876174 + AluSx SINE Alu 1 305 -7 276 185 420 17 chr13 18869370 18869489 -100875409 + L1MC5 LINE L1 7747 7913 -48 797 159 0 15 chr13 18869587 18869719 -100875179 - FLAM_C SINE Alu -3 130 1 21 0 0 0 chr13 18869873 18869894 -100875004 + AT_rich Low_complexity Low_complexity 1 21 0 23 0 0 0 chr13 18871731 18871754 -100873144 + AT_rich Low_complexity Low_complexity 1 23 0 225 0 0 0 chr13 18872265 18872290 -100872608 + (T)n Simple_repeat Simple_repeat 1 25 0 31 0 0 0 chr13 18873652 18873683 -100871215 + AT_rich Low_complexity Low_complexity 1 31 0 214 337 117 42 chr13 18873683 18873782 -100871116 - L2 LINE L2 -36 3236 3146 1119 188 119 50 chr13 18873782 18874102 -100870796 + MER2 DNA MER2_type 3 344 0 214 337 117 42 chr13 18874102 18874311 -100870587 - L2 LINE L2 -126 3146 2905 478 187 134 0 chr13 18874709 18874843 -100870055 + L1M4 LINE L1 4263 4414 -1732 1034 194 45 5 chr13 18874844 18875045 -100869853 + AluJb SINE Alu 84 292 -20 1752 174 7 7 chr13 18875140 18875422 -100869476 + AluJb SINE Alu 1 282 -30 23 0 0 0 chr13 18875422 18875445 -100869453 + AT_rich Low_complexity Low_complexity 1 23 0 717 220 13 13 chr13 18875463 18875622 -100869276 - FRAM SINE Alu -11 165 7 21 36 0 0 chr13 18875788 18875816 -100869082 + AT_rich Low_complexity Low_complexity 1 28 0 395 100 0 0 chr13 18876153 18876203 -100868695 - MER8 DNA MER2_type 0 239 190 * 2398 148 39 11 chr13 18876198 18876636 -100868262 + Tigger2 DNA MER2_type 2269 2718 0 2374 164 25 39 chr13 18877114 18877627 -100867271 - L1MB8 LINE L1 -1 6177 5672 889 186 45 45 chr13 18877629 18877828 -100867070 - MER20 DNA MER1_type -20 199 1 1651 167 25 41 chr13 18877848 18878052 -100866846 - AluSx SINE Alu 0 312 113 1952 125 24 53 chr13 18878052 18878427 -100866471 - THE1B LTR MaLR 0 364 1 1651 167 25 41 chr13 18878427 18878539 -100866359 - AluSx SINE Alu -199 113 1 390 224 0 0 chr13 18879539 18879606 -100865292 - MER58A DNA MER1_type -39 68 2 2045 167 129 21 chr13 18879977 18880060 -100864838 + MLT1C LTR MaLR 1 74 -393 2143 111 24 0 chr13 18880060 18880349 -100864549 + AluSx SINE Alu 1 296 -16 2045 167 129 21 chr13 18880349 18880685 -100864213 + MLT1C LTR MaLR 74 465 -2 2052 143 0 13 chr13 18880927 18881241 -100863657 + AluSx SINE Alu 1 310 -2 183 156 0 0 chr13 18881572 18881604 -100863294 + (CATA)n Simple_repeat Simple_repeat 3 34 0 508 288 93 42 chr13 18881666 18881881 -100863017 + MIR SINE MIR 23 248 -14 1588 213 7 7 chr13 18884252 18884548 -100860350 - AluJb SINE Alu -16 296 1 289 271 21 0 chr13 18884752 18884848 -100860050 - Charlie2 DNA MER1_type -158 2704 2607 1488 203 119 21 chr13 18884977 18885558 -100859340 - Charlie2 DNA MER1_type -322 2540 1903 240 250 111 9 chr13 18885596 18885704 -100859194 - Charlie2 DNA MER1_type -2464 318 200 2162 115 60 3 chr13 18886089 18886420 -100858478 + MER41C LTR ERV1 1 350 -204 456 151 24 24 chr13 18886420 18886546 -100858352 + (TA)n Simple_repeat Simple_repeat 1 126 0 1078 138 76 57 chr13 18886555 18886765 -100858133 + MER41C LTR ERV1 341 554 0 1202 272 116 14 chr13 18887126 18887232 -100857666 + L2 LINE L2 2552 2646 -667 1979 126 13 23 chr13 18887232 18887541 -100857357 - AluSx SINE Alu -6 306 1 1202 272 116 14 chr13 18887541 18888115 -100856783 + L2 LINE L2 2646 3307 -6 2469 89 0 0 chr13 18888837 18889141 -100855757 - AluSc SINE Alu -5 304 1 510 291 0 7 chr13 18890310 18890458 -100854440 + MIR SINE MIR 6 152 -110 454 272 188 74 chr13 18893356 18893575 -100851323 - L2 LINE L2 -372 2942 2749 2231 128 0 0 chr13 18893575 18893881 -100851017 - AluSx SINE Alu -6 306 1 454 272 188 74 chr13 18893881 18894322 -100850576 - L2 LINE L2 -565 2749 2207 1684 120 0 0 chr13 18894384 18894601 -100850297 + AluSq SINE Alu 3 219 -94 246 224 176 35 chr13 18894640 18894810 -100850088 + L1 LINE L1 4882 5075 -1071 1406 182 4 13 chr13 18894882 18895171 -100849727 + L1MD3 LINE L1 7510 7973 -3 541 270 137 35 chr13 18895177 18895213 -100849685 + L1ME LINE L1 5188 5219 -902 1580 125 225 36 chr13 18895213 18895573 -100849325 - MSTA LTR MaLR 0 428 1 541 270 137 35 chr13 18895573 18895963 -100848935 + L1ME LINE L1 5219 5659 -462 2159 144 0 0 chr13 18895969 18896268 -100848630 + AluSx SINE Alu 1 299 -13 2129 137 75 27 chr13 18897367 18897769 -100847129 + L1MC1 LINE L1 5904 6324 -9 1730 148 47 7 chr13 18900097 18900374 -100844524 - AluSx SINE Alu -23 289 2 38 51 0 0 chr13 18900892 18900951 -100843947 + AT_rich Low_complexity Low_complexity 1 59 0 2164 110 0 7 chr13 18901113 18901412 -100843486 - AluSq SINE Alu -16 297 1 2365 89 0 0 chr13 18901669 18901960 -100842938 + AluSg SINE Alu 1 291 -19 22 35 0 0 chr13 18902335 18902364 -100842534 + AT_rich Low_complexity Low_complexity 1 29 0 516 146 12 12 chr13 18902918 18903032 -100841866 - L1M LINE L1 -830 5316 5211 771 104 0 9 chr13 18903057 18903172 -100841726 - AluSg/x SINE Alu 0 309 196 767 217 166 5 chr13 18903172 18903389 -100841509 + HAL1 LINE L1 1486 1737 -770 980 106 8 0 chr13 18903463 18903595 -100841303 - FLAM_C SINE Alu 0 133 1 595 111 56 0 chr13 18903844 18903934 -100840964 - AluSg/x SINE Alu -14 295 201 2041 102 4 0 chr13 18903937 18904202 -100840696 + AluSp SINE Alu 47 312 -1 260 229 110 37 chr13 18904223 18904332 -100840566 + HAL1 LINE L1 1729 1845 -662 392 254 0 87 chr13 18904407 18904505 -100840393 + HAL1 LINE L1 2159 2235 -272 1557 165 0 73 chr13 18904505 18904820 -100840078 + AluJb SINE Alu 1 292 -20 392 254 0 87 chr13 18904820 18904906 -100839992 + HAL1 LINE L1 2235 2327 -180 659 236 85 43 chr13 18904911 18905030 -100839868 - L1M4 LINE L1 -883 5263 5151 2387 85 7 3 chr13 18905030 18905337 -100839561 - AluSc SINE Alu -1 308 1 659 236 85 43 chr13 18905337 18905475 -100839423 - L1M4 LINE L1 -995 5151 4995 2278 108 0 19 chr13 18905719 18906034 -100838864 + AluSx SINE Alu 1 309 -3 185 313 102 8 chr13 18907079 18907147 -100837751 + MIR SINE MIR 79 139 -123 1357 155 17 67 chr13 18907147 18907444 -100837454 + AluJo SINE Alu 1 282 -30 357 24 0 0 chr13 18907445 18907487 -100837411 + (GA)n Simple_repeat Simple_repeat 1 42 0 185 313 102 8 chr13 18907487 18907544 -100837354 + MIR SINE MIR 138 218 -44 303 318 85 0 chr13 18907881 18908010 -100836888 + L2 LINE L2 3133 3272 0 2054 125 4 0 chr13 18908086 18908365 -100836533 + AluSg SINE Alu 1 280 -30 331 73 36 0 chr13 18908367 18908422 -100836476 + (TA)n Simple_repeat Simple_repeat 1 57 0 442 295 13 13 chr13 18908426 18908582 -100836316 + MIR SINE MIR 103 258 -4 2329 81 0 14 chr13 18908582 18908877 -100836021 + AluSg SINE Alu 1 291 -19 268 257 57 57 chr13 18908900 18909040 -100835858 + MIR3 SINE MIR 69 208 0 2493 115 37 91 chr13 18909048 18909534 -100835364 + L1MB2 LINE L1 5671 6130 -41 1131 68 0 0 chr13 18909534 18909667 -100835231 + AluYb8 SINE Alu 1 133 -185 2438 49 3 3 chr13 18909668 18909952 -100834946 + AluY SINE Alu 1 284 -27 275 0 0 28 chr13 18909963 18909999 -100834899 + (CAAA)n Simple_repeat Simple_repeat 1 35 0 2004 105 7 56 chr13 18910061 18910366 -100834532 + AluSq SINE Alu 1 290 -23 2318 109 0 10 chr13 18910760 18911073 -100833825 + AluY SINE Alu 2 311 0 306 366 6 0 chr13 18911370 18911534 -100833364 + (TGG)n Simple_repeat Simple_repeat 1 165 0 183 326 31 0 chr13 18912306 18912404 -100832494 - MIR SINE MIR -56 206 106 2224 183 25 27 chr13 18912460 18912594 -100832304 + L1MB3 LINE L1 5696 5829 -354 2159 118 0 29 chr13 18912594 18912909 -100831989 + AluSg SINE Alu 1 306 -4 2008 121 37 0 chr13 18912916 18913214 -100831684 + AluSx SINE Alu 2 310 -2 2224 183 25 27 chr13 18913214 18913558 -100831340 + L1MB3 LINE L1 5835 6181 -2 2315 77 0 7 chr13 18914155 18914453 -100830445 - AluY SINE Alu -15 296 1 187 245 0 0 chr13 18914516 18914565 -100830333 - L2 LINE L2 -9 3304 3256 382 287 68 94 chr13 18914592 18914857 -100830041 - L2 LINE L2 -5 3267 3010 253 73 18 109 chr13 18915016 18915071 -100829827 + LTR67 LTR ERVL 504 553 -4 2194 99 0 3 chr13 18915524 18915817 -100829081 - AluSg1 SINE Alu -17 292 1 1874 119 0 14 chr13 18915890 18916167 -100828731 - AluSx SINE Alu 0 312 40 242 167 0 0 chr13 18916532 18916568 -100828330 + Charlie1 DNA MER1_type 1 36 -2725 1232 190 28 120 chr13 18916580 18916690 -100828208 + Charlie1 DNA MER1_type 2347 2466 -295 2165 115 0 7 chr13 18916690 18916994 -100827904 + AluSx SINE Alu 1 302 -10 1232 190 28 120 chr13 18916994 18917340 -100827558 + Charlie1 DNA MER1_type 2466 2761 0 2145 117 0 3 chr13 18918136 18918427 -100826471 + AluSg1 SINE Alu 1 290 -19 2213 105 0 3 chr13 18918513 18918835 -100826063 - AluSx SINE Alu 0 321 1 464 284 66 51 chr13 18918856 18919250 -100825648 + L1ME4a LINE L1 5649 6048 -73 311 90 0 9 chr13 18919252 18919462 -100825436 - AluSc SINE Alu -6 293 1 208 203 85 17 chr13 18919551 18919610 -100825288 + MIR3 SINE MIR 138 200 -8 2129 99 20 17 chr13 18920944 18921237 -100823661 - AluSx SINE Alu -18 294 1 277 200 25 12 chr13 18921530 18921610 -100823288 - MIR SINE MIR -134 128 48 * 300 252 59 25 chr13 18921603 18921722 -100823176 - MIR SINE MIR -89 173 51 2052 136 0 16 chr13 18921756 18922065 -100822833 + AluJb SINE Alu 6 309 -3 30 0 0 0 chr13 18922065 18922095 -100822803 + AT_rich Low_complexity Low_complexity 1 30 0 2333 65 41 3 chr13 18922097 18922387 -100822511 + AluY SINE Alu 3 303 -8 373 244 28 82 chr13 18922422 18922741 -100822157 - L1ME4a LINE L1 -255 5866 5565 237 189 57 0 chr13 18923343 18923396 -100821502 + MER69 DNA AcHobo 1 56 -121 2175 104 0 27 chr13 18923430 18923727 -100821171 - AluSx SINE Alu -23 289 1 975 200 0 0 chr13 18923727 18923902 -100820996 - AluJo/FRAM SINE Alu -3 309 135 2421 84 0 3 chr13 18923902 18924210 -100820688 - AluY SINE Alu -4 307 1 1571 188 0 7 chr13 18924213 18924485 -100820413 - AluJo SINE Alu -39 273 4 706 274 10 5 chr13 18924577 18924774 -100820124 - L1PB4 LINE L1 -3 6153 5956 1977 186 91 59 chr13 18925120 18925458 -100819440 + MER119 DNA MER1_type 5 331 -252 2168 105 20 13 chr13 18925458 18925762 -100819136 + AluSx SINE Alu 3 308 -4 1977 186 91 59 chr13 18925762 18925773 -100819125 + MER119 DNA MER1_type 331 340 -243 2339 95 0 3 chr13 18925773 18926067 -100818831 + AluSc SINE Alu 1 293 -16 1977 186 91 59 chr13 18926067 18926111 -100818787 + MER119 DNA MER1_type 340 381 -202 2456 71 0 10 chr13 18926111 18926420 -100818478 + AluSg SINE Alu 1 306 -4 1977 186 91 59 chr13 18926420 18926582 -100818316 + MER119 DNA MER1_type 381 580 -3 21 0 0 0 chr13 18926794 18926815 -100818083 + AT_rich Low_complexity Low_complexity 1 21 0 2030 121 0 4 chr13 18926815 18927095 -100817803 + AluSx SINE Alu 1 279 -33 2042 103 0 0 chr13 18927095 18927366 -100817532 + AluSq SINE Alu 39 310 -3 2292 73 0 0 chr13 18927386 18927729 -100817169 + AluY SINE Alu 10 352 0 543 277 74 25 chr13 18927793 18927995 -100816903 - MIR SINE MIR -2 260 49 2148 145 0 0 chr13 18928035 18928346 -100816552 - AluSx SINE Alu -1 311 1 1055 158 0 0 chr13 18928374 18928532 -100816366 - FRAM SINE Alu -18 158 1 2130 104 14 0 chr13 18928558 18928857 -100816041 + AluSx SINE Alu 1 303 0 2285 123 0 0 chr13 18928860 18929169 -100815729 + AluSq SINE Alu 1 309 -4 2156 135 0 13 chr13 18929170 18929482 -100815416 + AluSx SINE Alu 1 308 -4 4898 74 18 50 chr13 18929482 18929778 -100815120 + L1PA11 LINE L1 5490 5794 -380 2321 101 3 19 chr13 18929778 18930096 -100814802 + AluSp SINE Alu 1 313 0 4898 74 18 50 chr13 18930096 18930504 -100814394 + L1PA11 LINE L1 5794 6172 -2 2134 131 0 0 chr13 18930780 18931070 -100813828 + AluSx SINE Alu 5 294 -18 2226 102 0 0 chr13 18931074 18931387 -100813511 + AluSx SINE Alu 1 313 0 1986 146 0 14 chr13 18931440 18931727 -100813171 + AluJo SINE Alu 1 283 -29 259 125 152 18 chr13 18931899 18932011 -100812887 + (TTAAA)n Simple_repeat Simple_repeat 1 127 0 1650 139 25 86 chr13 18932338 18932475 -100812423 + AluJb SINE Alu 1 145 -167 2006 141 0 7 chr13 18932475 18932773 -100812125 + AluSc SINE Alu 1 296 -13 1650 139 25 86 chr13 18932773 18932959 -100811939 + AluJb SINE Alu 145 304 -8 2189 80 42 11 chr13 18932981 18933268 -100811630 - AluSp SINE Alu -17 296 1 1484 185 62 14 chr13 18933277 18933553 -100811345 - AluJo SINE Alu -23 289 1 1723 155 11 90 chr13 18933676 18934043 -100810855 + LTR9 LTR ERV1 1 338 -274 274 209 11 128 chr13 18934080 18934118 -100810780 + LTR9 LTR ERV1 347 388 -224 2325 87 0 0 chr13 18934118 18934405 -100810493 - AluSg SINE Alu -23 287 1 274 209 11 128 chr13 18934405 18934475 -100810423 + LTR9 LTR ERV1 388 438 -174 2433 88 0 3 chr13 18934729 18935035 -100809863 - AluSg SINE Alu 0 310 6 2498 77 0 3 chr13 18935086 18935396 -100809502 + AluY SINE Alu 1 309 -2 658 153 0 0 chr13 18935405 18935503 -100809395 - FRAM SINE Alu -37 139 42 2633 142 42 35 chr13 18935503 18935744 -100809154 + L1MB8 LINE L1 5649 5887 -291 1975 129 3 3 chr13 18935744 18936030 -100808868 + AluSx SINE Alu 5 290 -22 2633 142 42 35 chr13 18936030 18936309 -100808589 + L1MB8 LINE L1 5887 6173 -5 928 193 56 9 chr13 18936098 18936311 -100808587 + L1MB7 LINE L1 5955 6177 -7 841 171 0 34 chr13 18936313 18936459 -100808439 + AluJo SINE Alu 1 141 -171 2098 145 3 3 chr13 18936459 18936769 -100808129 + AluSx SINE Alu 1 310 -2 222 0 0 33 chr13 18936956 18936986 -100807912 + (TTTTA)n Simple_repeat Simple_repeat 2 50 0 1797 154 11 4 chr13 18936986 18937265 -100807633 - AluJb SINE Alu -1 311 2 434 192 10 39 chr13 18938012 18938116 -100806782 + MER31A LTR ERV1 353 453 -32 435 223 194 23 chr13 18938783 18938951 -100805947 - MIR SINE MIR -16 246 41 2042 120 7 7 chr13 18941644 18941936 -100802962 + AluSx SINE Alu 1 292 -20 326 259 96 22 chr13 18943412 18943547 -100801351 - L1ME4a LINE L1 -45 6076 5932 26 64 0 0 chr13 18944962 18945009 -100799889 + AT_rich Low_complexity Low_complexity 1 47 0 263 276 95 48 chr13 18945062 18945167 -100799731 + MIR SINE MIR 38 147 -61 2209 117 0 0 chr13 18946578 18946868 -100798030 + AluSx SINE Alu 1 290 -22 438 250 132 7 chr13 18947048 18947184 -100797714 - MIR SINE MIR -108 154 2 1470 198 59 7 chr13 18947252 18947540 -100797358 + AluJo SINE Alu 1 303 -9 1655 186 26 10 chr13 18948187 18948493 -100796405 + AluJb SINE Alu 1 311 -1 207 193 23 45 chr13 18949324 18949412 -100795486 + (TTATA)n Simple_repeat Simple_repeat 2 87 0 22 35 0 0 chr13 18949602 18949631 -100795267 + AT_rich Low_complexity Low_complexity 1 29 0 1855 139 16 32 chr13 18949804 18950114 -100794784 + AluJb SINE Alu 1 305 -7 541 187 41 57 chr13 18950125 18950248 -100794650 + FRAM SINE Alu 2 122 -54 920 176 29 29 chr13 18950476 18950681 -100794217 - MER3 DNA MER1_type -3 206 2 320 300 25 0 chr13 18950747 18950867 -100794031 + L1ME1 LINE L1 6039 6161 -5 25 75 0 0 chr13 18951800 18951853 -100793045 + AT_rich Low_complexity Low_complexity 1 53 0 2285 102 3 3 chr13 18951935 18952239 -100792659 + AluSp SINE Alu 1 304 -9 22 35 0 0 chr13 18952344 18952373 -100792525 + AT_rich Low_complexity Low_complexity 1 29 0 654 271 134 4 chr13 18952634 18952861 -100792037 + MIR SINE MIR 6 256 -6 348 269 32 0 chr13 18953360 18953453 -100791445 - MER94 DNA DNA -15 119 24 197 274 0 95 chr13 18953709 18953793 -100791105 + L2 LINE L2 3197 3272 0 376 234 183 77 chr13 18954077 18954208 -100790690 - MIR SINE MIR 0 262 146 2452 64 0 0 chr13 18954208 18954506 -100790392 + AluY SINE Alu 1 298 -13 376 234 183 77 chr13 18954506 18954609 -100790289 - MIR SINE MIR -116 146 3 244 210 371 7 chr13 18954770 18954913 -100789985 + L1MC4 LINE L1 7466 7660 -382 354 261 54 8 chr13 18955114 18955244 -100789654 + L1MC4 LINE L1 7817 7952 -90 267 211 0 0 chr13 18955274 18955326 -100789572 + FAM SINE Alu 116 167 -12 2221 118 0 3 chr13 18955352 18955657 -100789241 + AluSg SINE Alu 1 304 -6 345 100 0 0 chr13 18955662 18955712 -100789186 + (TA)n Simple_repeat Simple_repeat 2 51 0 742 165 0 31 chr13 18955812 18955939 -100788959 + FLAM_C SINE Alu 1 123 -10 2233 93 6 19 chr13 18955949 18956081 -100788817 + AluSc SINE Alu 1 133 -176 2361 97 0 0 chr13 18956081 18956390 -100788508 + AluY SINE Alu 1 309 -2 2233 93 6 19 chr13 18956390 18956568 -100788330 + AluSc SINE Alu 133 307 -2 358 255 121 13 chr13 18956836 18956985 -100787913 - MIR SINE MIR -21 241 77 21 57 0 0 chr13 18957086 18957121 -100787777 + AT_rich Low_complexity Low_complexity 1 35 0 2202 144 0 0 chr13 18958052 18958358 -100786540 - AluSx SINE Alu -6 306 1 2259 115 0 10 chr13 18958533 18958845 -100786053 - AluSc SINE Alu 0 309 1 802 154 22 7 chr13 18959244 18959380 -100785518 - FLAM_C SINE Alu -1 142 5 29 0 0 0 chr13 18959899 18959928 -100784970 + AT_rich Low_complexity Low_complexity 1 29 0 29 0 0 0 chr13 18960899 18960928 -100783970 + AT_rich Low_complexity Low_complexity 1 29 0 244 374 40 0 chr13 18961231 18961330 -100783568 - MIR3 SINE MIR -34 174 72 2339 101 7 0 chr13 18961898 18962195 -100782703 - AluSp SINE Alu -14 299 1 202 219 27 27 chr13 18963013 18963086 -100781812 + A-rich Low_complexity Low_complexity 5 77 0 246 196 61 20 chr13 18964238 18964334 -100780564 - MIR SINE MIR -72 136 81 21 0 0 0 chr13 18965321 18965342 -100779556 + AT_rich Low_complexity Low_complexity 1 21 0 249 100 0 0 chr13 18966407 18966447 -100778451 + Alu SINE Alu 94 133 -169 198 71 0 0 chr13 18967164 18967192 -100777706 + (CAAAA)n Simple_repeat Simple_repeat 1 28 0 2458 78 7 0 chr13 18967395 18967704 -100777194 - AluY SINE Alu 0 311 1 2032 146 0 0 chr13 18967865 18968159 -100776739 - AluJb SINE Alu -10 302 9 234 176 39 0 chr13 18968539 18968590 -100776308 - Charlie1 DNA MER1_type 0 2761 2709 1010 108 0 0 chr13 18968981 18969111 -100775787 + AluSx SINE Alu 1 130 -182 1075 139 48 0 chr13 18969176 18969341 -100775557 + AluSx SINE Alu 129 301 -11 243 0 0 0 chr13 18970433 18970460 -100774438 + (TAAAA)n Simple_repeat Simple_repeat 2 28 0 260 49 49 0 chr13 18970618 18970659 -100774239 + (TTTG)n Simple_repeat Simple_repeat 2 44 0 2187 110 0 0 chr13 18970661 18970943 -100773955 - AluSg SINE Alu -28 282 1 771 108 0 18 chr13 18970968 18971079 -100773819 - AluSq/x SINE Alu -202 110 2 2002 130 13 0 chr13 18971369 18971669 -100773229 - AluSq SINE Alu -9 304 1 2441 86 0 0 chr13 18971825 18972126 -100772772 + AluSx SINE Alu 1 301 -11 266 181 213 31 chr13 18972237 18972397 -100772501 - Charlie1 DNA MER1_type -49 2712 2524 2197 100 0 13 chr13 18972400 18972699 -100772199 + AluSq SINE Alu 1 295 -18 1394 151 19 31 chr13 18972758 18972930 -100771968 - AluJo SINE Alu -1 311 141 288 0 0 0 chr13 18972930 18972962 -100771936 + (TA)n Simple_repeat Simple_repeat 2 33 0 1394 151 19 31 chr13 18972962 18973047 -100771851 - AluJo SINE Alu -171 141 57 356 227 52 0 chr13 18973245 18973342 -100771556 - U13 snRNA snRNA -2 102 1 2860 182 51 49 chr13 18973411 18974282 -100770616 - L1MDa LINE L1 -4363 2177 1302 1553 146 18 18 chr13 18974282 18974556 -100770342 - AluSp SINE Alu -18 295 22 2000 142 23 3 chr13 18974699 18975001 -100769897 + AluSx SINE Alu 1 308 -4 294 262 39 0 chr13 18975001 18975104 -100769794 - MER87 LTR ERV1 -40 501 395 1230 183 19 23 chr13 18975119 18975382 -100769516 - LTR38 LTR ERV1 -161 395 134 800 102 0 70 chr13 18975499 18975627 -100769271 + FRAM SINE Alu 54 172 -4 2408 240 158 42 chr13 18975628 18976745 -100768153 - L1MDa LINE L1 -5220 1320 19 2013 134 30 0 chr13 18976799 18977097 -100767801 + AluSx SINE Alu 1 307 -5 2103 104 0 10 chr13 18977097 18977385 -100767513 + AluSg SINE Alu 1 285 -25 180 0 0 0 chr13 18977385 18977405 -100767493 + (TTAA)n Simple_repeat Simple_repeat 3 22 0 536 188 10 0 chr13 18977411 18977507 -100767391 - MER3 DNA MER1_type -71 138 42 1140 196 113 48 chr13 18977809 18978145 -100766753 - MLT1A1 LTR MaLR 0 365 8 433 252 44 7 chr13 18978221 18978356 -100766542 - MER117 DNA MER1_type -57 140 1 181 270 162 40 chr13 18978561 18978615 -100766283 + MIR SINE MIR 19 86 -122 1232 139 16 84 chr13 18978615 18978652 -100766246 - MER46A DNA MER2_type -2495 236 198 1938 133 19 16 chr13 18978652 18978961 -100765937 + AluSx SINE Alu 1 310 -2 1232 139 16 84 chr13 18978961 18979174 -100765724 - MER46A DNA MER2_type -2533 198 3 181 270 162 40 chr13 18979174 18979193 -100765705 + MIR SINE MIR 86 101 -107 32 26 0 0 chr13 18979407 18979446 -100765452 + AT_rich Low_complexity Low_complexity 1 39 0 263 271 169 26 chr13 18979473 18979634 -100765264 - HAL1 LINE L1 -69 2438 2301 2575 48 0 10 chr13 18979634 18979944 -100764954 - AluY SINE Alu -4 307 1 263 271 169 26 chr13 18979944 18980125 -100764773 - HAL1 LINE L1 -206 2301 2047 2083 110 3 17 chr13 18980145 18980446 -100764452 - AluSp SINE Alu -16 297 1 240 33 0 0 chr13 18981405 18981435 -100763463 + LTR6A LTR ERV1 73 102 -462 283 278 11 0 chr13 18981615 18981705 -100763193 - HAL1 LINE L1 -615 1892 1802 1111 253 108 65 chr13 18981767 18982277 -100762621 - HAL1 LINE L1 -846 1661 1103 2495 61 3 6 chr13 18982277 18982589 -100762309 - AluY SINE Alu 0 311 1 1111 253 108 65 chr13 18982589 18982878 -100762020 - HAL1 LINE L1 -1404 1103 828 1169 126 6 6 chr13 18982880 18983043 -100761855 - AluSg/x SINE Alu -15 295 130 2335 93 3 3 chr13 18983043 18983345 -100761553 - AluSq SINE Alu -11 302 1 1169 126 6 6 chr13 18983345 18983356 -100761542 - AluSg/x SINE Alu -179 131 121 566 170 64 7 chr13 18983359 18983500 -100761398 - L1MB8 LINE L1 -5 6173 6025 25 31 0 0 chr13 18983512 18983544 -100761354 + AT_rich Low_complexity Low_complexity 1 32 0 2088 88 18 7 chr13 18983551 18983835 -100761063 - AluY SINE Alu -24 287 1 1227 143 12 12 chr13 18983889 18984134 -100760764 + L1M4 LINE L1 5255 5499 -675 1340 155 5 9 chr13 18984137 18984350 -100760548 + AluSx SINE Alu 1 212 -100 412 107 0 0 chr13 18984350 18984406 -100760492 + AluSg/x SINE Alu 76 131 -179 1016 110 0 0 chr13 18984510 18984646 -100760252 + AluSg/x SINE Alu 162 297 -13 2209 128 63 101 chr13 18984663 18984757 -100760141 - L1MB8 LINE L1 -170 6008 5912 2163 120 0 0 chr13 18984757 18985057 -100759841 - AluSx SINE Alu -12 300 1 2209 128 63 101 chr13 18985057 18985486 -100759412 - L1MB8 LINE L1 -266 5912 5505 1154 101 0 0 chr13 18985486 18985497 -100759401 - AluSq/x SINE Alu -163 149 139 2241 126 0 3 chr13 18985497 18985807 -100759091 - AluSx SINE Alu -3 309 1 1154 101 0 0 chr13 18985807 18985944 -100758954 - AluSq/x SINE Alu -172 140 1 1237 163 18 19 chr13 18985947 18986259 -100758639 - L1MB8 LINE L1 -675 5499 5190 760 104 0 9 chr13 18986261 18986376 -100758522 - AluSg/x SINE Alu 0 310 197 767 217 166 5 chr13 18986376 18986593 -100758305 + HAL1 LINE L1 1486 1737 -770 980 106 8 0 chr13 18986667 18986799 -100758099 - FLAM_C SINE Alu 0 133 1 595 111 56 0 chr13 18987048 18987138 -100757760 - AluSg/x SINE Alu -14 295 201 2041 102 4 0 chr13 18987141 18987406 -100757492 + AluSp SINE Alu 47 312 -1 260 229 110 37 chr13 18987427 18987536 -100757362 + HAL1 LINE L1 1729 1845 -662 392 254 0 87 chr13 18987611 18987709 -100757189 + HAL1 LINE L1 2159 2235 -272 1569 166 0 67 chr13 18987709 18988022 -100756876 + AluJb SINE Alu 1 292 -20 392 254 0 87 chr13 18988022 18988108 -100756790 + HAL1 LINE L1 2235 2327 -180 659 236 85 43 chr13 18988113 18988232 -100756666 - L1M4 LINE L1 -883 5263 5151 2387 85 7 3 chr13 18988232 18988539 -100756359 - AluSc SINE Alu -1 308 1 659 236 85 43 chr13 18988539 18988677 -100756221 - L1M4 LINE L1 -995 5151 4995 2246 102 0 20 chr13 18988921 18989224 -100755674 + AluSx SINE Alu 1 297 -15 199 305 102 8 chr13 18990270 18990338 -100754560 + MIR SINE MIR 79 139 -123 1346 158 17 70 chr13 18990338 18990636 -100754262 + AluJo SINE Alu 1 282 -30 357 24 0 0 chr13 18990637 18990679 -100754219 + (GA)n Simple_repeat Simple_repeat 1 42 0 199 305 102 8 chr13 18990679 18990736 -100754162 + MIR SINE MIR 138 218 -44 303 318 85 0 chr13 18991073 18991202 -100753696 + L2 LINE L2 3133 3272 0 2041 129 4 0 chr13 18991278 18991557 -100753341 + AluSg SINE Alu 1 280 -30 382 79 32 0 chr13 18991559 18991622 -100753276 + (TA)n Simple_repeat Simple_repeat 2 66 0 442 295 13 13 chr13 18991624 18991780 -100753118 + MIR SINE MIR 103 258 -4 2329 81 0 14 chr13 18991780 18992075 -100752823 + AluSg SINE Alu 1 291 -19 268 257 57 57 chr13 18992098 18992238 -100752660 + MIR3 SINE MIR 69 208 0 2493 115 37 91 chr13 18992246 18992732 -100752166 + L1MB2 LINE L1 5671 6130 -41 1131 68 0 0 chr13 18992732 18992865 -100752033 + AluYb8 SINE Alu 1 133 -185 2438 49 3 3 chr13 18992866 18993150 -100751748 + AluY SINE Alu 1 284 -27 275 0 0 28 chr13 18993161 18993197 -100751701 + (CAAA)n Simple_repeat Simple_repeat 1 35 0 2004 105 7 56 chr13 18993259 18993564 -100751334 + AluSq SINE Alu 1 290 -23 2318 109 0 10 chr13 18993958 18994271 -100750627 + AluY SINE Alu 2 311 0 306 366 6 0 chr13 18994568 18994732 -100750166 + (TGG)n Simple_repeat Simple_repeat 1 165 0 183 326 31 0 chr13 18995504 18995602 -100749296 - MIR SINE MIR -56 206 106 2224 183 25 27 chr13 18995658 18995792 -100749106 + L1MB3 LINE L1 5696 5829 -354 2159 118 0 29 chr13 18995792 18996107 -100748791 + AluSg SINE Alu 1 306 -4 2008 121 37 0 chr13 18996114 18996412 -100748486 + AluSx SINE Alu 2 310 -2 2224 183 25 27 chr13 18996412 18996756 -100748142 + L1MB3 LINE L1 5835 6181 -2 2315 77 0 7 chr13 18997353 18997651 -100747247 - AluY SINE Alu -15 296 1 187 245 0 0 chr13 18997714 18997763 -100747135 - L2 LINE L2 -9 3304 3256 382 287 68 94 chr13 18997790 18998055 -100746843 - L2 LINE L2 -5 3267 3010 253 73 18 109 chr13 18998214 18998269 -100746629 + LTR67 LTR ERVL 504 553 -4 2194 99 0 3 chr13 18998722 18999015 -100745883 - AluSg1 SINE Alu -17 292 1 1909 111 0 25 chr13 18999087 18999367 -100745531 - AluSx SINE Alu 0 312 40 242 167 0 0 chr13 18999732 18999768 -100745130 + Charlie1 DNA MER1_type 1 36 -2725 1232 190 28 120 chr13 18999780 18999890 -100745008 + Charlie1 DNA MER1_type 2347 2466 -295 2165 115 0 7 chr13 18999890 19000194 -100744704 + AluSx SINE Alu 1 302 -10 1232 190 28 120 chr13 19000194 19000540 -100744358 + Charlie1 DNA MER1_type 2466 2761 0 2155 115 6 19 chr13 19001336 19001649 -100743249 + AluSx SINE Alu 1 309 -3 2796 167 44 175 chr13 19001649 19002160 -100742738 - L1MB2 LINE L1 -134 6037 5461 2141 118 0 32 chr13 19002160 19002474 -100742424 - AluSx SINE Alu -8 304 1 2796 167 44 175 chr13 19002474 19002589 -100742309 - L1MB2 LINE L1 -710 5461 5333 279 241 0 0 chr13 19002589 19002647 -100742251 - AluYa5 SINE Alu -109 192 135 2796 167 44 175 chr13 19002647 19002762 -100742136 - L1MB2 LINE L1 -838 5333 5205 1458 150 117 36 chr13 19002762 19003036 -100741862 - AluSg SINE Alu -14 296 1 2013 126 0 46 chr13 19003046 19003348 -100741550 - AluJb SINE Alu -24 288 1 2796 167 44 175 chr13 19003348 19003418 -100741480 - L1MB2 LINE L1 -835 5336 5258 3226 168 66 45 chr13 19003570 19003670 -100741228 - L1MB2 LINE L1 -44 6127 6031 2284 96 0 19 chr13 19003670 19003983 -100740915 + AluSg SINE Alu 1 307 -3 3226 168 66 45 chr13 19003983 19004494 -100740404 - L1MB2 LINE L1 -140 6031 5498 2141 118 0 32 chr13 19004494 19004808 -100740090 - AluSx SINE Alu -8 304 1 3226 168 66 45 chr13 19004808 19004880 -100740018 - L1MB2 LINE L1 -673 5498 5429 27 0 0 0 chr13 19004881 19004908 -100739990 + AT_rich Low_complexity Low_complexity 1 27 0 279 241 0 0 chr13 19004923 19004981 -100739917 - AluYa5 SINE Alu -109 192 135 7099 185 54 44 chr13 19004982 19005096 -100739802 - L1M3 LINE L1 -745 5401 5290 1441 153 117 36 chr13 19005096 19005370 -100739528 - AluSg SINE Alu -14 296 1 2026 126 0 46 chr13 19005380 19005682 -100739216 - AluJb SINE Alu -24 288 1 7099 185 54 44 chr13 19005682 19006156 -100738742 - L1M3 LINE L1 -864 5282 4814 2424 47 7 13 chr13 19006156 19006457 -100738441 + AluY SINE Alu 2 300 -11 7099 185 54 44 chr13 19006457 19006870 -100738028 - L1M3 LINE L1 -1332 4814 4406 2492 33 40 10 chr13 19006870 19007171 -100737727 - AluY SINE Alu -1 310 1 7099 185 54 44 chr13 19007171 19007376 -100737522 - L1M3 LINE L1 -1740 4406 4204 2388 99 0 0 chr13 19007376 19007670 -100737228 + AluSq SINE Alu 1 294 -19 7099 185 54 44 chr13 19007670 19008287 -100736611 - L1M3 LINE L1 -1942 4204 3562 2369 106 0 0 chr13 19008314 19008626 -100736272 - AluSx SINE Alu 0 312 1 2274 105 0 3 chr13 19008631 19008935 -100735963 - AluY SINE Alu -8 303 1 1909 172 0 0 chr13 19008935 19009232 -100735666 - AluJb SINE Alu -14 298 2 1804 136 63 11 chr13 19009243 19009530 -100735368 - AluSg SINE Alu -4 306 5 763 208 65 4 chr13 19009540 19009785 -100735113 - L1M3 LINE L1 -2878 3268 3009 2734 124 12 23 chr13 19009799 19010227 -100734671 - LTR3 LTR ERVK -9 423 1 739 154 7 0 chr13 19010234 19010377 -100734521 - L1M3 LINE L1 -3138 3008 2865 2397 91 0 10 chr13 19010419 19010726 -100734172 - AluSx SINE Alu -8 304 1 264 172 0 0 chr13 19010740 19010798 -100734100 + A-rich Low_complexity Low_complexity 1 58 0 1809 125 59 7 chr13 19011436 19011724 -100733174 + AluSx SINE Alu 1 303 -9 1978 127 0 20 chr13 19011763 19012062 -100732836 + AluSx SINE Alu 5 297 -15 1875 127 76 0 chr13 19012082 19012357 -100732541 + AluSx SINE Alu 1 296 -16 1876 166 17 0 chr13 19012420 19012721 -100732177 - AluJb SINE Alu -6 306 1 654 201 174 0 chr13 19012782 19012931 -100731967 - AluSg/x SINE Alu 0 312 138 1102 177 5 0 chr13 19012933 19013119 -100731779 - AluJo SINE Alu -12 300 114 243 162 0 0 chr13 19013123 19013160 -100731738 + Alu SINE Alu 6 42 -259 198 245 41 0 chr13 19014112 19014161 -100730737 - MIR SINE MIR 0 262 212 809 200 35 0 chr13 19014225 19014395 -100730503 - MIR SINE MIR -70 192 17 327 292 102 0 chr13 19014993 19015130 -100729768 - L2 LINE L2 -8 3305 3155 1160 130 12 0 chr13 19015253 19015415 -100729483 - AluSg/x SINE Alu -19 291 128 561 283 88 4 chr13 19015486 19015712 -100729186 - MIR SINE MIR -2 260 16 1607 187 67 54 chr13 19016001 19016325 -100728573 + MSTD LTR MaLR 1 332 -64 2302 86 3 3 chr13 19016325 19016617 -100728281 + AluSx SINE Alu 1 292 -20 1607 187 67 54 chr13 19016617 19016683 -100728215 + MSTD LTR MaLR 332 396 0 182 298 0 18 chr13 19017335 19017392 -100727506 + MIR SINE MIR 37 92 -116 289 270 190 45 chr13 19017453 19017581 -100727317 + L1ME3 LINE L1 4561 4669 -1477 2095 119 6 44 chr13 19017581 19017901 -100726997 + AluSq SINE Alu 1 308 -5 289 270 190 45 chr13 19017901 19018257 -100726641 + L1ME3 LINE L1 4669 5115 -1031 2166 106 228 6 chr13 19018358 19018718 -100726180 - LTR12 LTR ERV1 -234 480 41 246 143 0 0 chr13 19018718 19018760 -100726138 - LTR30 LTR ERV1 -680 42 1 435 252 102 82 chr13 19018802 19018847 -100726051 + L1ME3 LINE L1 5258 5301 -863 747 289 65 59 chr13 19018847 19019353 -100725545 + MLT1J LTR MaLR 1 509 -2 435 252 102 82 chr13 19019353 19019541 -100725357 + L1ME3 LINE L1 5301 5484 -680 1415 177 130 0 chr13 19019541 19019795 -100725103 + AluSx SINE Alu 5 291 -21 435 252 102 82 chr13 19019795 19020227 -100724671 + L1ME3 LINE L1 5484 5939 -225 412 292 116 52 chr13 19020524 19020887 -100724011 + L1MEd LINE L1 88 473 -5732 251 227 163 23 chr13 19021136 19021308 -100723590 + L1MEd LINE L1 727 922 -5283 * 3393 167 86 63 chr13 19021304 19021768 -100723130 + L1MB3 LINE L1 5121 5573 -610 2478 73 0 3 chr13 19021768 19022071 -100722827 + AluSg SINE Alu 4 305 -5 3393 167 86 63 chr13 19022071 19022292 -100722606 + L1MB3 LINE L1 5573 5787 -396 1903 156 0 3 chr13 19022292 19022587 -100722311 + AluJb SINE Alu 5 298 -14 3393 167 86 63 chr13 19022587 19022860 -100722038 + L1MB3 LINE L1 5787 6099 -84 2359 88 0 7 chr13 19022888 19023183 -100721715 - AluY SINE Alu -18 293 1 334 229 73 37 chr13 19023266 19023375 -100721523 + L1ME3 LINE L1 6047 6159 -3 2245 131 0 6 chr13 19023439 19023753 -100721145 + AluSx SINE Alu 1 312 0 1953 157 130 3 chr13 19023824 19024200 -100720698 - MSTB LTR MaLR -2 424 1 2133 119 7 0 chr13 19024219 19024514 -100720384 + AluSq SINE Alu 1 297 -16 239 276 0 26 chr13 19024541 19024617 -100720281 + LTR33 LTR ERVL 41 114 -407 367 195 87 60 chr13 19024710 19024859 -100720039 + LTR33 LTR ERVL 369 521 0 580 286 83 25 chr13 19024927 19025326 -100719572 + L1MEd LINE L1 1317 1738 -4658 2324 91 7 0 chr13 19025381 19025679 -100719219 - AluSp SINE Alu -13 300 1 1385 179 31 45 chr13 19025706 19025997 -100718901 + AluJb SINE Alu 1 287 -25 360 119 0 0 chr13 19025999 19026058 -100718840 + (CAATC)n Simple_repeat Simple_repeat 2 60 0 1570 175 4 15 chr13 19026058 19026326 -100718572 - AluJb SINE Alu -47 265 1 693 215 0 15 chr13 19026350 19026485 -100718413 + FRAM SINE Alu 34 166 -10 2104 82 50 7 chr13 19026555 19026863 -100718035 - AluSp SINE Alu 0 313 1 351 283 66 11 chr13 19026935 19027270 -100717628 + L1MEd LINE L1 2033 2360 -3855 684 200 0 0 chr13 19027278 19027393 -100717505 + FLAM_C SINE Alu 9 123 -20 305 322 54 20 chr13 19027726 19027875 -100717023 + L1MEd LINE L1 2746 2899 -3316 305 186 186 85 chr13 19027899 19027945 -100716953 + L1MEd LINE L1 3201 3241 -2974 1919 139 10 10 chr13 19027945 19028246 -100716652 + AluSx SINE Alu 1 301 -11 305 186 186 85 chr13 19028246 19028398 -100716500 + L1MEd LINE L1 3241 3419 -2796 2382 86 13 0 chr13 19028406 19028708 -100716190 + AluSp SINE Alu 1 306 -7 332 272 28 67 chr13 19028746 19028926 -100715972 + L1MEd LINE L1 3646 3818 -2397 642 110 42 68 chr13 19028936 19029054 -100715844 + L1MA7 LINE L1 6174 6288 -3 2043 140 6 19 chr13 19029187 19029501 -100715397 + AluSx SINE Alu 1 310 -2 2187 121 0 13 chr13 19029503 19029808 -100715090 + AluSq SINE Alu 1 301 -12 1240 177 55 52 chr13 19029808 19029967 -100714931 + Looper DNA T2_type 341 503 -1055 1615 184 3 33 chr13 19029967 19030271 -100714627 - AluJb SINE Alu -17 295 1 1240 177 55 52 chr13 19030271 19030421 -100714477 + Looper DNA T2_type 503 651 -907 2255 82 7 33 chr13 19030422 19030726 -100714172 - AluSq SINE Alu -16 297 2 645 247 129 0 chr13 19030742 19030912 -100713986 - MER3 DNA MER1_type -1 208 17 2339 203 78 19 chr13 19030928 19031009 -100713889 + Looper DNA T2_type 662 737 -821 1086 200 43 0 chr13 19031009 19031219 -100713679 + MER20 DNA MER1_type 1 219 0 2339 203 78 19 chr13 19031219 19031703 -100713195 + Looper DNA T2_type 737 1260 -298 375 115 77 115 chr13 19031697 19031781 -100713117 + Looper DNA T2_type 1166 1247 -311 * 1957 163 0 3 chr13 19031781 19032087 -100712811 + AluJo SINE Alu 1 305 -7 375 115 77 115 chr13 19032087 19032106 -100712792 + Looper DNA T2_type 1247 1265 -293 1929 155 3 3 chr13 19032131 19032434 -100712464 + AluJb SINE Alu 1 303 -9 2193 105 3 40 chr13 19032440 19032765 -100712133 + AluSp SINE Alu 1 313 0 226 178 44 0 chr13 19032781 19032826 -100712072 + MER3 DNA MER1_type 41 87 -122 * 530 250 16 0 chr13 19032818 19032942 -100711956 - MER3 DNA MER1_type -82 127 2 417 235 8 53 chr13 19033042 19033174 -100711724 - MIR SINE MIR 0 262 137 2186 111 3 3 chr13 19033195 19033493 -100711405 + AluSx SINE Alu 1 298 -14 414 221 93 0 chr13 19033493 19033579 -100711319 - FLAM_A SINE Alu -20 113 20 404 111 79 0 chr13 19033630 19033723 -100711175 - AluSp/q SINE Alu 0 317 220 1980 104 0 4 chr13 19033752 19034003 -100710895 - AluSx SINE Alu -62 250 1 247 323 81 0 chr13 19034122 19034246 -100710652 - L2 LINE L2 -5 3267 3134 1183 157 63 22 chr13 19034295 19034518 -100710380 + AluJo SINE Alu 79 310 -2 287 296 139 12 chr13 19034565 19034737 -100710161 - L2 LINE L2 -213 3059 2866 713 150 8 24 chr13 19034806 19034933 -100709965 + MER45R DNA AcHobo 1457 1581 0 1971 93 12 99 chr13 19035073 19035405 -100709493 + AluSg SINE Alu 1 303 -7 2340 89 10 0 chr13 19035455 19035757 -100709141 - AluSp SINE Alu -8 305 1 2352 88 0 10 chr13 19036174 19036479 -100708419 + AluSq SINE Alu 1 302 -11 2144 136 0 0 chr13 19036511 19036812 -100708086 + AluSx SINE Alu 1 301 -11 2208 128 0 0 chr13 19036965 19037262 -100707636 + AluSx SINE Alu 1 297 -15 390 258 132 33 chr13 19037443 19037656 -100707242 - L1ME LINE L1 -297 5824 5591 340 320 98 40 chr13 19037905 19038377 -100706521 - L1ME LINE L1 -1539 4607 4109 342 230 30 22 chr13 19038450 19038585 -100706313 - L1ME LINE L1 -2146 4000 3865 237 323 0 50 chr13 19039010 19039109 -100705789 + L2 LINE L2 2981 3074 -198 209 284 0 118 chr13 19039302 19039357 -100705541 + MIR SINE MIR 76 110 -152 1947 121 25 18 chr13 19039357 19039667 -100705231 - AluSx SINE Alu 0 312 1 209 284 0 118 chr13 19039667 19039737 -100705161 + MIR SINE MIR 110 187 -75 2095 126 17 3 chr13 19039896 19040197 -100704701 + AluSq SINE Alu 1 305 -8 295 262 0 0 chr13 19040446 19040507 -100704391 - MER2 DNA MER2_type -212 133 73 478 140 68 33 chr13 19040510 19040718 -100704180 + AluJo SINE Alu 3 290 -22 323 221 0 93 chr13 19040732 19040818 -100704080 - MER2 DNA MER2_type -267 78 1 410 212 17 51 chr13 19040995 19041113 -100703785 + MIR SINE MIR 35 148 -60 589 233 69 80 chr13 19041573 19041720 -100703178 + MIR SINE MIR 2 146 -116 2309 83 10 0 chr13 19041720 19042009 -100702889 + AluSg SINE Alu 2 293 -17 589 233 69 80 chr13 19042009 19042123 -100702775 + MIR SINE MIR 146 260 -2 2110 130 3 0 chr13 19042227 19042526 -100702372 - AluSx SINE Alu -12 300 1 246 277 18 62 chr13 19042620 19042738 -100702160 + MIR SINE MIR 2 110 -104 27 62 0 0 chr13 19044543 19044591 -100700307 + GC_rich Low_complexity Low_complexity 1 48 0 2491 77 0 0 chr13 19044960 19045271 -100699627 - AluSx SINE Alu -1 311 1 1622 156 33 10 chr13 19045495 19045796 -100699102 + AluJb SINE Alu 1 308 -4 193 313 24 24 chr13 19045824 19045907 -100698991 - L3 LINE CR1 -22 1555 1473 180 247 56 79 chr13 19045972 19046061 -100698837 - L3 LINE CR1 -211 1366 1280 462 18 0 0 chr13 19046159 19046214 -100698684 + (TG)n Simple_repeat Simple_repeat 2 56 0 2110 115 4 0 chr13 19046215 19046493 -100698405 - AluSx SINE Alu -33 279 1 271 224 0 0 chr13 19046678 19046727 -100698171 + L2 LINE L2 3210 3258 -14 2216 94 3 39 chr13 19046945 19047253 -100697645 + AluSp SINE Alu 1 297 -16 2133 122 26 0 chr13 19047253 19047556 -100697342 + AluSx SINE Alu 1 311 -1 1888 150 0 23 chr13 19047561 19047867 -100697031 + AluJo SINE Alu 5 303 -9 2205 122 7 0 chr13 19047869 19048165 -100696733 + AluSx SINE Alu 1 298 -14 2236 96 36 0 chr13 19048165 19048466 -100696432 + AluSx SINE Alu 1 312 0 180 303 30 45 chr13 19048609 19048675 -100696223 - L3 LINE CR1 -5 1572 1508 1713 162 9 62 chr13 19048764 19048936 -100695962 - AluSx SINE Alu -8 304 124 186 43 0 0 chr13 19048936 19048959 -100695939 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 2091 92 3 11 chr13 19048959 19049243 -100695655 - AluSc SINE Alu -27 282 1 2372 85 0 0 chr13 19049252 19049565 -100695333 - AluSq SINE Alu 0 313 1 1713 162 9 62 chr13 19049565 19049701 -100695197 - AluSx SINE Alu -195 117 1 217 224 64 66 chr13 19050193 19050299 -100694599 - MIR SINE MIR -5 203 85 193 336 44 44 chr13 19050323 19050460 -100694438 + MIR SINE MIR 14 150 -112 998 270 145 58 chr13 19050733 19051400 -100693498 + MER21B LTR ERV1 6 730 -133 442 223 9 9 chr13 19051546 19051658 -100693240 - MIR SINE MIR -56 206 95 2448 79 3 0 chr13 19051680 19051984 -100692914 - AluY SINE Alu -4 307 3 396 226 28 0 chr13 19051996 19052102 -100692796 + L1 LINE L1 2768 2876 -3270 264 172 0 0 chr13 19052107 19052165 -100692733 + T-rich Low_complexity Low_complexity 1 58 0 2397 91 0 10 chr13 19052180 19052487 -100692411 + AluSx SINE Alu 1 304 -8 739 154 7 0 chr13 19052529 19052672 -100692226 + L1 LINE L1 2865 3008 -3138 2734 124 12 23 chr13 19052679 19053107 -100691791 + LTR3 LTR ERVK 1 423 -9 763 208 65 4 chr13 19053121 19053366 -100691532 + L1 LINE L1 3009 3268 -2878 1804 136 63 11 chr13 19053376 19053663 -100691235 + AluSg SINE Alu 5 306 -4 2019 164 0 0 chr13 19053674 19053985 -100690913 + AluJb SINE Alu 2 312 0 2361 81 0 3 chr13 19053985 19054282 -100690616 + AluY SINE Alu 1 296 -15 29 0 0 0 chr13 19054282 19054311 -100690587 + AT_rich Low_complexity Low_complexity 1 29 0 460 102 0 153 chr13 19054311 19054409 -100690489 + AluSq SINE Alu 121 203 -110 993 74 0 0 chr13 19054444 19054566 -100690332 + AluSg/x SINE Alu 181 302 -8 583 214 15 30 chr13 19054601 19054732 -100690166 + FLAM_A SINE Alu 1 129 -4 609 154 164 34 chr13 19054734 19054778 -100690120 + Charlie1 DNA MER1_type 2478 2515 -246 2260 103 0 13 chr13 19054778 19055088 -100689810 - AluSq SINE Alu -7 306 1 609 154 164 34 chr13 19055088 19055251 -100689647 + Charlie1 DNA MER1_type 2515 2712 -49 2466 86 0 0 chr13 19055362 19055663 -100689235 - AluSx SINE Alu -11 301 1 2020 130 13 0 chr13 19055819 19056119 -100688779 + AluSq SINE Alu 1 304 -9 803 111 19 0 chr13 19056412 19056520 -100688378 + AluSq/x SINE Alu 1 110 -203 2208 110 0 0 chr13 19056545 19056870 -100688028 + AluSg SINE Alu 1 325 0 243 0 0 0 chr13 19057028 19057055 -100687843 + (TTTTA)n Simple_repeat Simple_repeat 2 28 0 1078 139 48 0 chr13 19058147 19058312 -100686586 - AluSx SINE Alu -11 299 127 1016 108 0 0 chr13 19058377 19058507 -100686391 - AluSx SINE Alu -182 130 1 254 176 39 0 chr13 19058898 19058949 -100685949 + Charlie1 DNA MER1_type 2709 2761 0 2041 146 0 0 chr13 19059329 19059623 -100685275 + AluJb SINE Alu 9 302 -10 2486 78 7 0 chr13 19059784 19060093 -100684805 + AluY SINE Alu 1 311 0 198 71 0 0 chr13 19060296 19060324 -100684574 + (TTTTG)n Simple_repeat Simple_repeat 1 28 0 401 100 0 17 chr13 19061041 19061101 -100683797 - AluSc SINE Alu -178 131 73 2242 113 3 0 chr13 19061286 19061579 -100683319 - AluSx SINE Alu -18 294 1 889 154 0 0 chr13 19061579 19061715 -100683183 - AluSq/x SINE Alu -176 136 1 1640 188 122 26 chr13 19061717 19061759 -100683139 - LTR40c LTR ERVL -19 446 409 2303 114 21 15 chr13 19061759 19062093 -100682805 - MER1B DNA MER1_type -1 336 1 1640 188 122 26 chr13 19062093 19062427 -100682471 - LTR40c LTR ERVL -56 409 34 1017 272 101 8 chr13 19062458 19062833 -100682065 + L1MC4a LINE L1 5569 5978 -1830 2301 113 7 0 chr13 19062956 19063258 -100681640 - AluSx SINE Alu -8 304 1 1954 122 14 10 chr13 19063362 19063650 -100681248 - AluSq SINE Alu -24 289 1 2083 111 0 30 chr13 19063652 19063950 -100680948 - AluSx SINE Alu -23 289 1 189 0 0 0 chr13 19064813 19064834 -100680064 + (TG)n Simple_repeat Simple_repeat 2 22 0 2011 84 0 0 chr13 19066976 19067227 -100677671 - AluSx SINE Alu -6 306 56 1524 180 69 32 chr13 19067624 19068412 -100676486 + L1MB4 LINE L1 5017 5896 -284 1962 134 38 0 chr13 19068412 19068702 -100676196 + AluSq SINE Alu 1 301 -12 1524 180 69 32 chr13 19068702 19068964 -100675934 + L1MB4 LINE L1 5896 6147 -33 298 75 19 0 chr13 19069037 19069090 -100675808 + L1MB4 LINE L1 6127 6180 0 2246 106 0 3 chr13 19069213 19069514 -100675384 - AluSg SINE Alu -10 300 1 1913 156 45 66 chr13 19069873 19070051 -100674847 + Tigger2a DNA MER2_type 1 181 -2527 2084 139 3 3 chr13 19070051 19070361 -100674537 - AluSx SINE Alu -2 310 1 1913 156 45 66 chr13 19070361 19070624 -100674274 + Tigger2a DNA MER2_type 181 433 -1 29 60 0 0 chr13 19070813 19070863 -100674035 + AT_rich Low_complexity Low_complexity 1 50 0 22 88 0 0 chr13 19071303 19071360 -100673538 + AT_rich Low_complexity Low_complexity 1 57 0 250 284 37 12 chr13 19072015 19072096 -100672802 - MIR SINE MIR -149 113 31 304 327 80 34 chr13 19073329 19073592 -100671306 + L3b LINE CR1 1111 1385 -198 2319 99 3 0 chr13 19073606 19073910 -100670988 - AluSp SINE Alu -8 305 1 2485 72 3 3 chr13 19074009 19074315 -100670583 + AluSp SINE Alu 1 306 -7 2131 99 0 11 chr13 19075254 19075536 -100669362 - AluSx SINE Alu -33 279 1 375 174 14 0 chr13 19075797 19075866 -100669032 - L1 LINE L1 -1165 4981 4912 4280 144 61 29 chr13 19075872 19076759 -100668139 + L1MA4A LINE L1 4377 5235 -1068 2224 118 3 7 chr13 19076759 19077063 -100667835 + AluSx SINE Alu 1 303 -9 2345 95 3 0 chr13 19077066 19077362 -100667536 + AluSp SINE Alu 1 297 -16 4280 144 61 29 chr13 19077362 19078213 -100666685 + L1MA4A LINE L1 5236 6302 -1 2170 113 0 13 chr13 19078214 19078524 -100666374 + AluSx SINE Alu 1 306 -6 1230 123 0 0 chr13 19078905 19079075 -100665823 - AluSc SINE Alu 0 309 140 7483 63 150 4 chr13 19079076 19080142 -100664756 + MER11B LTR ERVK 1 1222 -14 1221 76 0 0 chr13 19080183 19080327 -100664571 - AluSc SINE Alu -165 144 1 1152 157 46 28 chr13 19080705 19080921 -100663977 - AluJb SINE Alu -26 286 67 1411 118 0 0 chr13 19080921 19081107 -100663791 + AluY SINE Alu 1 186 -125 404 208 13 0 chr13 19081136 19081213 -100663685 - AluJb SINE Alu -233 79 2 23 0 0 0 chr13 19081337 19081360 -100663538 + AT_rich Low_complexity Low_complexity 1 23 0 2780 153 50 21 chr13 19081775 19082310 -100662588 + L1MB4 LINE L1 5629 6179 -1 1605 160 14 34 chr13 19082835 19083129 -100661769 + AluJb SINE Alu 1 288 -24 1911 130 11 3 chr13 19083230 19083515 -100661383 - AluSx SINE Alu -25 287 1 1564 206 0 13 chr13 19083515 19083821 -100661077 - AluJo SINE Alu -8 304 3 1636 76 0 19 chr13 19083856 19084067 -100660831 + AluY SINE Alu 11 217 -94 757 185 14 0 chr13 19084170 19084316 -100660582 + AluSg/x SINE Alu 139 286 -26 585 186 16 16 chr13 19084313 19084437 -100660461 + AluSg/x SINE Alu 185 308 -4 * 1411 151 19 55 chr13 19084441 19084712 -100660186 - AluSx SINE Alu -21 291 31 1980 138 57 131 chr13 19084715 19085230 -100659668 - LTR12 LTR ERV1 -237 2201 55 227 176 39 20 chr13 19085230 19085281 -100659617 - LTR30 LTR ERV1 -670 52 1 * 238 176 147 0 chr13 19085281 19085314 -100659584 - AluS SINE Alu -260 43 1 257 140 20 20 chr13 19085281 19085331 -100659567 - AluSp SINE Alu -134 169 120 407 279 240 29 chr13 19085397 19085971 -100658927 + L2 LINE L2 2624 3305 -8 301 114 0 0 chr13 19086236 19086280 -100658618 - AluSx SINE Alu -251 48 5 1788 190 0 3 chr13 19086335 19086630 -100658268 + AluJb SINE Alu 1 294 -18 730 181 60 20 chr13 19086631 19086780 -100658118 + L1M4 LINE L1 3700 3854 -2292 1102 78 0 0 chr13 19086781 19086910 -100657988 + AluSg SINE Alu 2 130 -180 1520 111 0 0 chr13 19086920 19087127 -100657771 + AluSg SINE Alu 105 311 -1 1467 193 20 57 chr13 19087131 19087443 -100657455 + L1M4 LINE L1 3895 4194 -1952 814 120 0 113 chr13 19087443 19087593 -100657305 + FLAM_C SINE Alu 1 133 0 1467 193 20 57 chr13 19087593 19087633 -100657265 + L1M4 LINE L1 4194 4234 -1912 1368 125 15 4 chr13 19087635 19087827 -100657071 + L1M3 LINE L1 5471 5662 -509 1881 178 0 3 chr13 19087827 19088125 -100656773 + AluJo SINE Alu 16 312 0 1368 125 15 4 chr13 19088125 19088147 -100656751 + L1M3 LINE L1 5662 5682 -489 2424 88 0 10 chr13 19088268 19088576 -100656322 + AluSx SINE Alu 1 305 -7 307 287 113 0 chr13 19088701 19088816 -100656082 - LTR67 LTR ERVL -2 555 428 692 96 0 0 chr13 19088910 19089004 -100655894 - AluJb SINE Alu -209 103 10 255 250 0 0 chr13 19089420 19089480 -100655418 - MER5B DNA MER1_type 0 178 119 2046 54 0 8 chr13 19089720 19089961 -100654937 + AluY SINE Alu 62 300 -11 1644 113 16 23 chr13 19090020 19090276 -100654622 + AluSx SINE Alu 47 300 -12 553 107 0 0 chr13 19090835 19090910 -100653988 + FRAM/FAM SINE Alu 1 74 -102 1850 233 139 20 chr13 19091022 19091547 -100653351 + MLT1E2 LTR MaLR 1 598 -28 2027 114 32 38 chr13 19091547 19091729 -100653169 + MER44D DNA MER2_type 1 183 -2308 2469 96 0 3 chr13 19091729 19092042 -100652856 - AluSx SINE Alu 0 312 1 2027 114 32 38 chr13 19092042 19092200 -100652698 + MER44D DNA MER2_type 183 609 0 1850 233 139 20 chr13 19092200 19092233 -100652665 + MLT1E2 LTR MaLR 598 626 0 2435 88 0 0 chr13 19092799 19093095 -100651803 + AluSx SINE Alu 1 296 -16 2079 129 7 0 chr13 19093102 19093397 -100651501 + AluSx SINE Alu 1 297 -15 1285 133 68 117 chr13 19093403 19093712 -100651186 + AluJb SINE Alu 1 294 -18 318 287 131 8 chr13 19094639 19094761 -100650137 - L2 LINE L2 0 3272 3136 1203 183 5 0 chr13 19095200 19095413 -100649485 - AluJo SINE Alu -85 227 14 929 196 37 5 chr13 19095453 19095667 -100649231 - AluSp SINE Alu -25 288 68 2218 85 13 10 chr13 19096007 19096314 -100648584 + AluSp SINE Alu 3 310 -3 1638 172 10 3 chr13 19096330 19096627 -100648271 + AluJo SINE Alu 14 312 0 578 236 45 6 chr13 19096793 19096950 -100647948 - MLT1C LTR MaLR -49 418 256 216 204 0 23 chr13 19096976 19097020 -100647878 + CT-rich Low_complexity Low_complexity 4 46 0 872 154 7 0 chr13 19097029 19097172 -100647726 - AluJb SINE Alu -32 280 137 466 144 10 10 chr13 19097743 19097840 -100647058 + GA-rich Low_complexity Low_complexity 3 99 0 312 257 109 0 chr13 19097846 19097947 -100646951 + L2 LINE L2 3144 3255 -17 188 138 0 0 chr13 19098142 19098171 -100646727 + L2 LINE L2 3025 3053 -219 368 311 125 0 chr13 19098213 19098409 -100646489 + MIR SINE MIR 24 249 -13 1205 94 0 6 chr13 19100938 19101098 -100643800 + AluY SINE Alu 1 159 -152 369 389 12 0 chr13 19101287 19101454 -100643444 + G-rich Low_complexity Low_complexity 4 172 0 226 176 0 0 chr13 19101469 19101520 -100643378 + AluSp/q SINE Alu 253 303 0 1926 137 0 11 chr13 19101563 19101893 -100643005 - AluSx SINE Alu 0 327 1 694 146 182 16 chr13 19101901 19102093 -100642805 - L1MC5 LINE L1 -51 7910 7687 * 2367 176 63 37 chr13 19102072 19102289 -100642609 + L1M4 LINE L1 4143 4353 -1793 2293 173 73 7 chr13 19102289 19102716 -100642182 - MSTB2 LTR MaLR -2 455 1 2367 176 63 37 chr13 19102716 19103144 -100641754 + L1M4 LINE L1 4353 4805 -1341 2201 96 0 7 chr13 19103144 19103436 -100641462 + AluSg SINE Alu 1 290 -20 2416 179 39 42 chr13 19103553 19103620 -100641278 + L1M4 LINE L1 4783 4849 -1297 2215 90 10 7 chr13 19103620 19103910 -100640988 - AluSc SINE Alu -16 293 3 2416 179 39 42 chr13 19103910 19104097 -100640801 + L1M4 LINE L1 4849 5035 -1111 3467 79 23 0 chr13 19104097 19104540 -100640358 - MLT2A2 LTR ERVL 0 453 1 2416 179 39 42 chr13 19104540 19104882 -100640016 + L1M4 LINE L1 5035 5378 -768 1702 164 34 7 chr13 19104882 19105244 -100639654 + AluSx SINE Alu 1 370 0 11163 176 45 30 chr13 19105244 19105454 -100639444 + L1MB1 LINE L1 2761 2966 -3202 2307 107 0 10 chr13 19105454 19105762 -100639136 + AluSg SINE Alu 1 305 -5 11163 176 45 30 chr13 19105762 19107072 -100637826 + L1MB1 LINE L1 2966 4346 -1822 2121 119 10 3 chr13 19107072 19107365 -100637533 - AluSx SINE Alu -17 295 1 11163 176 45 30 chr13 19107365 19108510 -100636388 + L1MB1 LINE L1 4346 5472 -696 360 0 0 0 chr13 19108513 19108553 -100636345 + (TTTA)n Simple_repeat Simple_repeat 4 43 0 548 132 0 0 chr13 19108558 19108634 -100636264 - AluJ SINE Alu -25 287 212 * 721 185 7 7 chr13 19108631 19108766 -100636132 - AluJ SINE Alu -164 148 14 3668 149 12 82 chr13 19108769 19109054 -100635844 + L1MB1 LINE L1 5452 5755 -413 709 177 8 0 chr13 19109054 19109184 -100635714 + FLAM_A SINE Alu 1 131 -2 3668 149 12 82 chr13 19109184 19109456 -100635442 + L1MB1 LINE L1 5755 5943 -225 2371 86 0 0 chr13 19109456 19109747 -100635151 + AluSx SINE Alu 5 295 -17 3668 149 12 82 chr13 19109747 19109957 -100634941 + L1MB1 LINE L1 5943 6166 -2 1926 110 26 55 chr13 19110028 19110364 -100634534 - AluSg SINE Alu 0 327 1 2467 82 3 0 chr13 19110365 19110670 -100634228 - AluSx SINE Alu -6 306 1 664 158 0 65 chr13 19110801 19110940 -100633958 - FLAM_C SINE Alu -12 131 2 1719 191 40 47 chr13 19111398 19111545 -100633353 - Charlie4a DNA MER1_type -1453 508 361 2446 98 30 8 chr13 19111545 19111911 -100632987 - THE1C LTR MaLR 0 375 2 1719 191 40 47 chr13 19111911 19112186 -100632712 - Charlie4a DNA MER1_type -1600 361 89 1989 115 33 0 chr13 19112475 19112745 -100632153 + AluSx SINE Alu 1 279 -33 201 39 0 0 chr13 19112747 19112773 -100632125 + (CAA)n Simple_repeat Simple_repeat 1 26 0 624 165 78 0 chr13 19113599 19113714 -100631184 - MER5A DNA MER1_type -5 184 61 1661 167 4 7 chr13 19113757 19114038 -100630860 - AluSx SINE Alu -31 281 2 328 225 28 0 chr13 19114589 19114660 -100630238 - MER5A DNA MER1_type -114 75 3 200 194 0 0 chr13 19114699 19114735 -100630163 + (TCCA)n Simple_repeat Simple_repeat 3 38 0 2394 72 10 0 chr13 19114739 19115030 -100629868 - AluSg SINE Alu -16 294 1 1300 193 127 36 chr13 19115086 19115417 -100629481 + MER93b LTR ERV1 13 373 0 468 225 83 0 chr13 19115432 19115555 -100629343 - L1ME1 LINE L1 0 6334 6041 1884 172 0 0 chr13 19115567 19115858 -100629040 + AluJb SINE Alu 13 303 -9 1224 175 13 4 chr13 19116014 19116242 -100628656 - L1ME1 LINE L1 -134 6032 5803 24 53 0 0 chr13 19116323 19116361 -100628537 + AT_rich Low_complexity Low_complexity 1 38 0 892 179 24 126 chr13 19116382 19116628 -100628270 - AluJo SINE Alu -89 223 3 1460 193 56 11 chr13 19116658 19116927 -100627971 + AluJo SINE Alu 1 281 -31 324 0 0 0 chr13 19116927 19116963 -100627935 + (TGAA)n Simple_repeat Simple_repeat 1 36 0 2560 70 0 0 chr13 19117317 19117619 -100627279 - AluSx SINE Alu -10 302 1 1172 59 0 0 chr13 19117620 19117755 -100627143 - AluSq/x SINE Alu -177 135 1 913 171 96 64 chr13 19117760 19118011 -100626887 - MER33 DNA MER1_type -58 266 8 184 276 26 26 chr13 19118179 19118255 -100626643 - MIR3 SINE MIR -43 165 90 346 313 6 39 chr13 19118434 19118616 -100626282 - MER5A DNA MER1_type -13 176 1 1669 124 83 4 chr13 19118815 19119117 -100625781 + AluSx SINE Alu 5 327 0 23 33 0 0 chr13 19119156 19119186 -100625712 + AT_rich Low_complexity Low_complexity 1 30 0 1955 101 4 43 chr13 19119221 19119524 -100625374 + AluSq SINE Alu 17 308 0 22 0 0 0 chr13 19119592 19119614 -100625284 + AT_rich Low_complexity Low_complexity 1 22 0 1557 173 20 14 chr13 19119621 19119916 -100624982 + AluJo SINE Alu 1 297 -15 1631 175 158 25 chr13 19120513 19120671 -100624227 + MLT1C LTR MaLR 1 137 -330 2008 88 62 39 chr13 19120671 19120976 -100623922 + AluSx SINE Alu 1 312 0 1631 175 158 25 chr13 19120976 19121223 -100623675 + MLT1C LTR MaLR 137 460 -7 889 166 31 34 chr13 19121306 19121509 -100623389 - MLT1A1 LTR MaLR 0 374 144 1935 82 7 44 chr13 19123096 19123366 -100621532 + AluSq SINE Alu 34 293 -20 28 0 0 0 chr13 19123575 19123603 -100621295 + AT_rich Low_complexity Low_complexity 1 28 0 412 61 30 30 chr13 19123958 19124024 -100620874 - Alu SINE Alu -251 67 2 940 157 0 24 chr13 19124453 19124619 -100620279 - MLT1A1 LTR MaLR -203 162 1 272 271 47 9 chr13 19124883 19124990 -100619908 - L1ME LINE L1 -509 5612 5502 2465 53 10 3 chr13 19125072 19125374 -100619524 + AluY SINE Alu 1 304 -7 2317 91 0 7 chr13 19125384 19125698 -100619200 + AluSx SINE Alu 1 312 0 27 0 0 0 chr13 19125896 19125923 -100618975 + AT_rich Low_complexity Low_complexity 1 27 0 1849 227 75 98 chr13 19125979 19127125 -100617773 + L1MC5 LINE L1 6788 7907 -54 1047 110 0 0 chr13 19127185 19127321 -100617577 + AluSq/x SINE Alu 1 136 -176 2048 118 10 7 chr13 19127321 19127609 -100617289 + AluSx SINE Alu 1 289 -23 205 217 0 29 chr13 19128378 19128447 -100616451 + T-rich Low_complexity Low_complexity 5 71 0 764 169 0 0 chr13 19128450 19128568 -100616330 - FLAM_C SINE Alu -15 118 1 286 263 74 0 chr13 19128888 19128983 -100615915 - MLT1J LTR MaLR -98 413 312 775 62 71 18 chr13 19130836 19130948 -100613950 + MER30 DNA MER1_type 2 119 -111 2227 97 7 7 chr13 19130951 19131250 -100613648 + AluSx SINE Alu 1 299 -13 358 264 124 3 chr13 19131347 19131544 -100613354 + L1ME1 LINE L1 1325 1667 -5293 1522 287 85 36 chr13 19131560 19131653 -100613245 + L1ME1 LINE L1 1495 1582 -5556 1638 157 20 34 chr13 19131653 19131947 -100612951 - AluJb SINE Alu -22 290 1 1522 287 85 36 chr13 19131947 19132889 -100612009 + L1ME1 LINE L1 1582 2728 -4410 2541 60 0 10 chr13 19132895 19133209 -100611689 - AluY SINE Alu 0 311 1 708 90 0 63 chr13 19133260 19133371 -100611527 + MSTA LTR MaLR 1 104 -324 1910 122 3 83 chr13 19133371 19133698 -100611200 - AluSx SINE Alu -7 305 5 2299 105 0 0 chr13 19133710 19134005 -100610893 - AluSg SINE Alu -14 296 2 4898 207 60 100 chr13 19134008 19134649 -100610249 + L1ME1 LINE L1 4514 5179 -1798 2191 95 4 0 chr13 19134649 19134922 -100609976 + AluSc SINE Alu 1 274 -35 4898 207 60 100 chr13 19134922 19135066 -100609832 + L1ME1 LINE L1 5179 5327 -1650 4519 25 2 2 chr13 19135066 19135587 -100609311 + L1PA3 LINE L1 5634 6154 -1 4898 207 60 100 chr13 19135587 19136727 -100608171 + L1ME1 LINE L1 5327 6389 -588 669 202 0 0 chr13 19136727 19136841 -100608057 - FLAM_C SINE Alu -27 116 3 4898 207 60 100 chr13 19136841 19137340 -100607558 + L1ME1 LINE L1 6389 6907 -70 1918 84 4 48 chr13 19138101 19138374 -100606524 - AluSq SINE Alu -8 305 45 1039 217 63 3 chr13 19138603 19138889 -100606009 + MER33 DNA MER1_type 20 322 -2 27 29 0 0 chr13 19139044 19139078 -100605820 + AT_rich Low_complexity Low_complexity 1 34 0 2012 118 4 11 chr13 19139082 19139362 -100605536 - AluSx SINE Alu -34 278 1 273 57 0 0 chr13 19139385 19139420 -100605478 + (T)n Simple_repeat Simple_repeat 1 35 0 2293 103 3 0 chr13 19139521 19139822 -100605076 - AluSp SINE Alu -11 302 1 324 0 0 0 chr13 19139831 19139867 -100605031 + (T)n Simple_repeat Simple_repeat 1 36 0 262 200 0 14 chr13 19140141 19140211 -100604687 + AluY SINE Alu 129 197 -104 231 119 48 0 chr13 19140208 19140250 -100604648 + Alu SINE Alu 90 133 0 * 264 323 113 0 chr13 19140944 19141068 -100603830 + L3 LINE CR1 1276 1413 -164 306 304 0 0 chr13 19141200 19141358 -100603540 + (CA)n Simple_repeat Simple_repeat 1 158 0 349 210 0 0 chr13 19141364 19141426 -100603472 - MER5B DNA MER1_type -78 100 39 2297 131 0 6 chr13 19142010 19142324 -100602574 - AluSx SINE Alu 0 312 1 449 286 29 11 chr13 19142332 19142507 -100602391 - L1MC5 LINE L1 -37 7924 7747 377 58 0 0 chr13 19143131 19143183 -100601715 + MADE1 DNA Mariner 1 52 -28 528 128 0 0 chr13 19143523 19143601 -100601297 - AluSp/q SINE Alu -14 299 222 350 270 15 7 chr13 19143804 19143941 -100600957 + L1M4 LINE L1 4995 5132 -1014 2299 67 0 53 chr13 19143942 19144289 -100600609 + AluSq SINE Alu 1 331 0 451 291 268 0 chr13 19144365 19144544 -100600354 - MIR SINE MIR -1 261 35 1931 135 28 0 chr13 19144641 19144923 -100599975 + AluSx SINE Alu 3 292 -20 2318 120 3 0 chr13 19145659 19145967 -100598931 + AluSx SINE Alu 1 309 -3 962 133 0 14 chr13 19146112 19146255 -100598643 + FLAM_C SINE Alu 3 143 0 2161 124 17 0 chr13 19147005 19147296 -100597602 + AluSx SINE Alu 1 296 -16 2186 112 11 0 chr13 19147298 19147584 -100597314 + AluSx SINE Alu 1 289 -23 2266 116 3 0 chr13 19147586 19147889 -100597009 + AluSx SINE Alu 1 304 -8 343 291 68 0 chr13 19148531 19148648 -100596250 - L2 LINE L2 -25 3247 3123 219 139 0 0 chr13 19149487 19149523 -100595375 + (TTCC)n Simple_repeat Simple_repeat 2 37 0 242 116 23 0 chr13 19149541 19149584 -100595314 + CT-rich Low_complexity Low_complexity 2 45 0 1799 180 0 19 chr13 19149584 19149901 -100594997 - AluJo SINE Alu -1 311 1 323 229 14 14 chr13 19150461 19150531 -100594367 + L2 LINE L2 3205 3274 -39 197 327 39 19 chr13 19150681 19150785 -100594113 + MIR SINE MIR 65 170 -92 1284 194 34 60 chr13 19151049 19151399 -100593499 + MER7C DNA MER2_type 1 341 -261 520 141 66 25 chr13 19151507 19151620 -100593278 + MER7C DNA MER2_type 316 433 -170 648 176 42 0 chr13 19151620 19151739 -100593159 + MER6 DNA MER2_type 1 124 -741 489 133 0 22 chr13 19151735 19151825 -100593073 + MER6 DNA MER2_type 778 865 0 * 1083 134 6 0 chr13 19151825 19151988 -100592910 + MER7C DNA MER2_type 439 602 0 2345 160 47 13 chr13 19152656 19153105 -100591793 - MER101 LTR ERV1 0 474 11 381 253 104 0 chr13 19153176 19153330 -100591568 - HAL1 LINE L1 -1599 908 739 219 36 0 0 chr13 19153494 19153522 -100591376 + (TTTG)n Simple_repeat Simple_repeat 1 28 0 2031 125 0 0 chr13 19153522 19153801 -100591097 - AluSx SINE Alu -33 279 1 208 182 18 55 chr13 19154551 19154606 -100590292 - L2 LINE L2 -1 3271 3219 600 330 51 3 chr13 19154775 19155129 -100589769 - L1ME LINE L1 -412 5758 5388 263 196 54 76 chr13 19155568 19155660 -100589238 + L2 LINE L2 2626 2715 -599 2208 118 3 3 chr13 19155660 19155957 -100588941 + AluSx SINE Alu 1 297 -15 1111 40 0 40 chr13 19155957 19156186 -100588712 + (TA)n Simple_repeat Simple_repeat 1 219 0 2166 89 3 74 chr13 19157552 19157888 -100587010 - AluSp SINE Alu -1 312 1 926 146 0 20 chr13 19157892 19158043 -100586855 - FRAM SINE Alu -8 168 21 2203 114 7 3 chr13 19159270 19159568 -100585330 - AluSq SINE Alu -14 299 1 1535 151 22 80 chr13 19159847 19159979 -100584919 + AluJb SINE Alu 1 139 -173 2211 135 0 3 chr13 19159979 19160290 -100584608 + AluSx SINE Alu 1 310 -2 1535 151 22 80 chr13 19160290 19160481 -100584417 + AluJb SINE Alu 139 305 -7 1737 164 12 49 chr13 19160718 19161042 -100583856 + AluJo SINE Alu 1 312 0 2026 135 0 13 chr13 19161043 19161346 -100583552 + AluJb SINE Alu 1 299 -13 2492 82 0 0 chr13 19161508 19161814 -100583084 + AluY SINE Alu 1 306 -5 2285 102 7 0 chr13 19161814 19162109 -100582789 + AluSp SINE Alu 1 297 -16 4198 126 38 7 chr13 19162109 19162960 -100581938 + L1MA4A LINE L1 5322 6302 -1 2199 113 0 25 chr13 19162961 19163281 -100581617 + AluSx SINE Alu 1 312 0 255 79 0 0 chr13 19164394 19164432 -100580466 + (CGGGGG)n Simple_repeat Simple_repeat 3 40 0 560 103 32 174 chr13 19166530 19166637 -100578261 - FLAM_C SINE Alu -169 133 53 222 37 0 0 chr13 19166637 19166664 -100578234 + (CAAAA)n Simple_repeat Simple_repeat 5 31 0 560 103 32 174 chr13 19166664 19166711 -100578187 - FLAM_C SINE Alu -249 53 1 192 250 36 18 chr13 19167827 19167883 -100577015 + MIR SINE MIR 34 90 -118 2501 85 0 3 chr13 19168812 19169119 -100575779 + AluSc SINE Alu 1 306 -3 208 342 26 13 chr13 19169331 19169407 -100575491 + L2 LINE L2 3171 3247 -25 1391 166 158 4 chr13 19170669 19170928 -100573970 + AluJo SINE Alu 2 300 -2 350 256 19 30 chr13 19171141 19171245 -100573653 + MIR SINE MIR 65 162 -46 198 292 0 0 chr13 19171618 19171666 -100573232 + L2 LINE L2 3223 3270 -2 261 262 56 19 chr13 19172376 19172483 -100572415 + L2 LINE L2 2420 2530 -784 2045 144 3 10 chr13 19172499 19172797 -100572101 - AluSx SINE Alu -14 298 3 226 238 16 32 chr13 19173618 19173681 -100571217 + LTR16A LTR ERVL 245 306 -144 1589 143 47 14 chr13 19174211 19174490 -100570408 + AluJb SINE Alu 12 299 -13 378 68 85 0 chr13 19175526 19175585 -100569313 - U6 snRNA snRNA -43 64 1 1446 179 65 21 chr13 19175585 19175875 -100569023 - AluJo SINE Alu -9 303 1 1060 129 101 60 chr13 19175932 19176149 -100568749 + AluSg/x SINE Alu 80 305 -7 23 0 0 0 chr13 19176191 19176214 -100568684 + AT_rich Low_complexity Low_complexity 1 23 0 2175 111 0 0 chr13 19176218 19176497 -100568401 + AluY SINE Alu 1 279 -32 198 0 0 0 chr13 19176500 19176522 -100568376 + (TAA)n Simple_repeat Simple_repeat 3 24 0 22 56 0 0 chr13 19176582 19176618 -100568280 + AT_rich Low_complexity Low_complexity 1 36 0 231 367 14 50 chr13 19177148 19177287 -100567611 + MIR3 SINE MIR 68 201 -7 544 233 48 0 chr13 19177502 19177648 -100567250 + MLT1H LTR MaLR 75 227 -322 330 266 86 22 chr13 19177710 19177849 -100567049 + MLT1H LTR MaLR 341 488 -67 1003 135 0 0 chr13 19177862 19178003 -100566895 + AluSg/x SINE Alu 148 288 -24 642 265 24 6 chr13 19178130 19178300 -100566598 - L1ME3A LINE L1 -295 5875 5703 251 242 11 105 chr13 19178800 19178895 -100566003 - MER91B DNA MER1_type -104 86 1 180 294 94 24 chr13 19178895 19178973 -100565925 - L2 LINE L2 -52 3220 3137 1534 204 7 0 chr13 19179312 19179596 -100565302 + AluJo SINE Alu 1 286 -26 285 276 72 23 chr13 19179620 19179798 -100565100 + MIR3 SINE MIR 6 186 -76 2018 152 7 3 chr13 19179984 19180287 -100564611 - AluSx SINE Alu -8 304 1 2451 83 0 0 chr13 19180590 19180892 -100564006 + AluSc SINE Alu 1 302 -7 1558 179 74 14 chr13 19181352 19181715 -100563183 + L1MB4 LINE L1 5790 6174 -6 1358 123 202 40 chr13 19181804 19182057 -100562841 + AluSg SINE Alu 1 294 -6 305 103 0 118 chr13 19183771 19183839 -100561059 - Alu SINE Alu -9 293 234 850 129 0 0 chr13 19183858 19183974 -100560924 - AluJb SINE Alu -196 116 1 2149 75 78 24 chr13 19185170 19185464 -100559434 + AluY SINE Alu 1 310 -1 2227 87 7 0 chr13 19187077 19187360 -100557538 + AluY SINE Alu 1 286 -21 181 0 0 0 chr13 19187360 19187380 -100557518 + (CAA)n Simple_repeat Simple_repeat 2 180 0 2073 87 11 7 chr13 19187449 19187736 -100557162 + AluSx SINE Alu 5 292 -20 21 0 0 0 chr13 19188371 19188392 -100556506 + GC_rich Low_complexity Low_complexity 1 21 0 461 65 0 0 chr13 19188596 19188658 -100556240 + Alu SINE Alu 240 301 -10 180 0 0 0 chr13 19188717 19188737 -100556161 + (TTG)n Simple_repeat Simple_repeat 2 21 0 2227 97 0 0 chr13 19188761 19189059 -100555839 - AluSq SINE Alu -15 298 1 2150 29 39 72 chr13 19189777 19190083 -100554815 - AluY SINE Alu -15 296 1 1094 155 52 0 chr13 19190704 19190898 -100554000 - MLT1A1 LTR MaLR 0 365 162 898 124 14 0 chr13 19190900 19191045 -100553853 + AluSg/x SINE Alu 128 274 -38 1992 91 4 0 chr13 19191053 19191317 -100553581 + AluSp SINE Alu 1 265 -48 1803 100 0 4 chr13 19191315 19191555 -100553343 + AluSc SINE Alu 18 256 -53 * 296 188 0 0 chr13 19191563 19191611 -100553287 - MLT1A1 LTR MaLR -222 143 96 403 77 0 0 chr13 19192062 19192114 -100552784 - Alu SINE Alu -257 53 2 1970 120 7 7 chr13 19192270 19192561 -100552337 - AluSx SINE Alu -21 291 1 466 287 14 106 chr13 19192634 19192818 -100552080 - L2 LINE L2 0 3313 3162 1981 144 3 3 chr13 19192818 19193130 -100551768 + AluSx SINE Alu 1 312 0 466 287 14 106 chr13 19193130 19193227 -100551671 - L2 LINE L2 -151 3162 3058 1573 187 25 7 chr13 19193232 19193516 -100551382 + AluJb SINE Alu 1 289 -13 845 157 25 19 chr13 19193537 19193696 -100551202 + AluJo SINE Alu 122 281 -31 21 0 0 0 chr13 19193774 19193795 -100551103 + AT_rich Low_complexity Low_complexity 1 21 0 873 131 0 22 chr13 19193797 19193934 -100550964 - AluJb SINE Alu -178 134 1 1272 279 134 34 chr13 19193935 19194635 -100550263 + L1MC4a LINE L1 5260 6029 -1779 100 68 0 0 chr13 19194677 19194868 -100550030 + AT_rich Low_complexity Low_complexity 1 191 0 2128 121 0 0 chr13 19194869 19195166 -100549732 - AluSx SINE Alu -15 297 1 663 140 0 0 chr13 19195455 19195562 -100549336 - AluJ SINE Alu -9 303 197 * 783 162 120 0 chr13 19195556 19195698 -100549200 - AluJ SINE Alu -152 160 2 237 255 128 39 chr13 19195836 19195938 -100548960 + L2 LINE L2 3203 3313 0 210 125 0 83 chr13 19196728 19196776 -100548122 + (TAAAAA)n Simple_repeat Simple_repeat 5 48 0 254 65 87 0 chr13 19196786 19196832 -100548066 + FLAM SINE Alu 84 133 0 752 241 27 68 chr13 19196885 19196963 -100547935 + MIR SINE MIR 31 111 -151 1155 181 114 55 chr13 19196963 19197306 -100547592 + MLT1A1 LTR MaLR 3 365 0 752 241 27 68 chr13 19197306 19197447 -100547451 + MIR SINE MIR 111 241 -21 321 312 26 79 chr13 19197686 19197827 -100547071 + MER91B DNA MER1_type 2 132 -58 1871 147 3 10 chr13 19197827 19198126 -100546772 - AluSx SINE Alu -10 302 6 321 312 26 79 chr13 19198126 19198173 -100546725 + MER91B DNA MER1_type 132 180 -10 972 157 41 15 chr13 19198867 19199064 -100545834 - L1MB2 LINE L1 -2 6169 5968 261 0 0 0 chr13 19199117 19199146 -100545752 + (CA)n Simple_repeat Simple_repeat 1 29 0 1331 197 23 83 chr13 19199152 19199538 -100545360 - MLT1A1 LTR MaLR -2 363 1 2185 87 3 0 chr13 19199881 19200169 -100544729 + AluSp SINE Alu 20 308 -5 793 138 0 32 chr13 19200688 19200811 -100544087 + FLAM_C SINE Alu 7 125 -18 1670 106 0 0 chr13 19200822 19201048 -100543850 + AluSg SINE Alu 1 226 -84 1070 141 22 22 chr13 19201644 19201829 -100543069 + MER47A DNA MER2_type 24 208 -158 698 71 20 0 chr13 19201929 19202028 -100542870 + MER47A DNA MER2_type 181 281 -85 2128 106 3 0 chr13 19202031 19202323 -100542575 - AluSx SINE Alu -16 296 4 935 170 44 0 chr13 19202334 19202493 -100542405 - FAM SINE Alu -5 170 5 2305 84 0 0 chr13 19202520 19202816 -100542082 - AluSq SINE Alu -17 296 1 231 250 214 0 chr13 19202820 19202904 -100541994 + MER94 DNA DNA 28 129 -5 258 321 58 21 chr13 19202917 19203107 -100541791 + L2 LINE L2 2566 2762 -552 465 133 0 67 chr13 19203163 19203225 -100541673 - MLT1A1 LTR MaLR 0 365 309 2100 114 7 0 chr13 19203225 19203531 -100541367 + AluSx SINE Alu 1 308 -4 465 133 0 67 chr13 19203531 19203558 -100541340 - MLT1A1 LTR MaLR -56 309 282 877 201 37 123 chr13 19203600 19203924 -100540974 - MLT1A1 LTR MaLR -69 296 1 1654 136 19 49 chr13 19203982 19204119 -100540779 + AluJo SINE Alu 1 140 -172 2208 100 13 0 chr13 19204119 19204419 -100540479 + AluSx SINE Alu 1 304 -8 2333 68 0 6 chr13 19204419 19204730 -100540168 + AluY SINE Alu 1 309 -2 1654 136 19 49 chr13 19204730 19204899 -100539999 + AluJo SINE Alu 138 299 -13 656 105 61 18 chr13 19204901 19205015 -100539883 - L1MC/D LINE L1 -762 5571 5453 236 327 73 48 chr13 19205328 19205723 -100539175 - L2 LINE L2 -12 3260 2856 2196 92 3 3 chr13 19205902 19206207 -100538691 + AluSq SINE Alu 1 305 -8 544 154 106 49 chr13 19206255 19206378 -100538520 - FLAM_C SINE Alu -3 130 1 2457 126 32 7 chr13 19206379 19206783 -100538115 + L1MC1 LINE L1 5559 5972 -361 26 0 0 0 chr13 19206913 19206939 -100537959 + AT_rich Low_complexity Low_complexity 1 26 0 920 151 0 7 chr13 19207096 19207248 -100537650 - AluSg/x SINE Alu -13 297 147 2144 82 0 0 chr13 19207415 19207726 -100537172 + AluSg SINE Alu 9 310 0 270 276 125 48 chr13 19207797 19208037 -100536861 + L1ME3A LINE L1 5539 5810 -311 1854 133 7 0 chr13 19208037 19208322 -100536576 + AluSx SINE Alu 1 287 -25 270 276 125 48 chr13 19208322 19208392 -100536506 + L1ME3A LINE L1 5810 5873 -248 212 323 70 61 chr13 19208430 19208659 -100536239 - L2 LINE L2 -46 3226 2996 837 176 85 0 chr13 19208887 19209040 -100535858 + AluJb SINE Alu 137 302 -10 669 172 15 60 chr13 19209279 19209413 -100535485 - FLAM_C SINE Alu -1 132 5 1016 127 14 0 chr13 19209440 19209582 -100535316 - U4 snRNA snRNA -1 144 1 1755 97 4 12 chr13 19209653 19209912 -100534986 + AluSx SINE Alu 45 301 -11 2111 123 3 3 chr13 19210705 19211014 -100533884 + AluSq SINE Alu 1 309 -4 1822 142 33 0 chr13 19211019 19211321 -100533577 + AluJb SINE Alu 1 312 0 645 165 9 9 chr13 19211773 19211888 -100533010 + LTR56 LTR ERV1 4 118 -327 2366 65 0 0 chr13 19211892 19212186 -100532712 - AluY SINE Alu -17 294 1 21 36 0 0 chr13 19213192 19213220 -100531678 + AT_rich Low_complexity Low_complexity 1 28 0 341 260 30 0 chr13 19213228 19213328 -100531570 + L1ME3A LINE L1 6065 6167 -3 1301 212 42 3 chr13 19213328 19213611 -100531287 + AluJb SINE Alu 1 294 -18 2200 89 13 0 chr13 19213621 19213923 -100530975 + AluY SINE Alu 1 306 -5 1936 120 3 13 chr13 19213966 19214265 -100530633 + AluSx SINE Alu 1 296 -16 450 0 0 0 chr13 19215604 19215654 -100529244 + (TG)n Simple_repeat Simple_repeat 2 51 0 1609 124 29 18 chr13 19215662 19215937 -100528961 - AluJo SINE Alu -30 282 5 22 0 0 0 chr13 19216987 19217009 -100527889 + AT_rich Low_complexity Low_complexity 1 22 0 21 0 0 0 chr13 19217445 19217466 -100527432 + AT_rich Low_complexity Low_complexity 1 21 0 224 261 15 46 chr13 19218634 19218699 -100526199 - MIR SINE MIR -4 258 196 2255 85 0 19 chr13 19219463 19219782 -100525116 + AluSq SINE Alu 1 313 0 255 242 0 30 chr13 19219952 19220018 -100524880 - L2 LINE L2 -325 2988 2925 30 59 0 0 chr13 19220622 19220673 -100524225 + GC_rich Low_complexity Low_complexity 1 51 0 27 29 0 0 chr13 19220784 19220818 -100524080 + GC_rich Low_complexity Low_complexity 1 34 0 21 0 0 0 chr13 19220861 19220882 -100524016 + GC_rich Low_complexity Low_complexity 1 21 0 2212 86 3 3 chr13 19221678 19221979 -100522919 + AluSp SINE Alu 2 302 -11 936 154 0 57 chr13 19222744 19222919 -100521979 - FRAM SINE Alu -11 165 1 288 244 48 48 chr13 19223121 19223369 -100521529 + L1ME4a LINE L1 5676 5915 -206 458 266 202 6 chr13 19224012 19224185 -100520713 - MIR SINE MIR -25 237 31 2171 113 0 0 chr13 19224238 19224538 -100520360 + AluSg SINE Alu 1 300 -10 1967 124 0 0 chr13 19224798 19225100 -100519798 + AluSx SINE Alu 1 302 0 1516 125 136 15 chr13 19225344 19225608 -100519290 + AluJb SINE Alu 1 296 -16 233 138 0 17 chr13 19225634 19225692 -100519206 + (TTTTTG)n Simple_repeat Simple_repeat 5 61 0 439 177 38 20 chr13 19225706 19225844 -100519054 - AluJb SINE Alu -151 161 2 260 242 0 45 chr13 19225870 19225936 -100518962 + MER21B LTR ERV1 6 68 -795 2627 211 154 32 chr13 19225969 19226406 -100518492 + MER21B LTR ERV1 19 401 -462 1921 91 48 42 chr13 19226406 19226715 -100518183 - AluSx SINE Alu -1 311 1 2627 211 154 32 chr13 19226715 19227017 -100517881 + MER21B LTR ERV1 401 848 -15 1845 130 27 0 chr13 19227362 19227654 -100517244 - AluJb SINE Alu -8 304 5 1952 137 0 3 chr13 19227674 19227967 -100516931 - AluSx SINE Alu -20 292 1 330 37 0 37 chr13 19228038 19228092 -100516806 - L1MB3 LINE L1 -2 6181 6130 2009 70 11 15 chr13 19229105 19229375 -100515523 - AluY SINE Alu -11 300 32 1701 115 14 22 chr13 19229748 19230026 -100514872 - AluSx SINE Alu -12 300 25 857 162 61 71 chr13 19230876 19231074 -100513824 + AluJb SINE Alu 89 284 -28 2085 89 7 23 chr13 19231118 19231421 -100513477 + AluSg SINE Alu 1 298 -12 252 269 12 88 chr13 19231436 19231596 -100513302 - L1ME3 LINE L1 -81 6081 5934 1202 232 152 71 chr13 19231636 19232059 -100512839 - L1ME3 LINE L1 -219 5951 5564 1802 129 10 26 chr13 19232059 19232362 -100512536 - AluSq SINE Alu -15 298 1 1747 102 0 117 chr13 19232365 19232708 -100512190 - AluSx SINE Alu -9 303 1 1202 232 152 71 chr13 19232708 19232977 -100511921 - L1ME3 LINE L1 -607 5563 5197 2095 108 3 0 chr13 19234790 19235076 -100509822 - AluSx SINE Alu -25 287 1 993 99 0 0 chr13 19235115 19235246 -100509652 + AluSq/x SINE Alu 1 131 -182 306 284 31 62 chr13 19236120 19236282 -100508616 + MIR3 SINE MIR 50 206 -2 * 823 212 123 25 chr13 19236271 19236507 -100508391 + MIR SINE MIR 2 260 -2 1881 101 45 3 chr13 19236557 19236844 -100508054 - AluY SINE Alu -12 299 1 1384 170 69 22 chr13 19236927 19237203 -100507695 + AluJo SINE Alu 4 292 -20 228 35 0 0 chr13 19237203 19237232 -100507666 + (CATA)n Simple_repeat Simple_repeat 2 30 0 438 285 90 7 chr13 19237280 19237424 -100507474 + MIR SINE MIR 29 184 -78 2328 113 0 0 chr13 19237658 19237958 -100506940 + AluSx SINE Alu 1 300 -12 1506 133 0 5 chr13 19238200 19238410 -100506488 + AluJb SINE Alu 1 209 -103 2216 121 82 3 chr13 19238410 19238637 -100506261 - MER83B LTR ERV1 0 378 114 1553 128 139 4 chr13 19238637 19238903 -100505995 + AluJb SINE Alu 1 302 0 2216 121 82 3 chr13 19238903 19239015 -100505883 - MER83B LTR ERV1 -264 114 12 286 108 0 0 chr13 19239014 19239051 -100505847 + AluJ/FRAM SINE Alu 230 266 -36 * 180 111 0 0 chr13 19239095 19239122 -100505776 + (A)n Simple_repeat Simple_repeat 1 27 0 1803 152 10 14 chr13 19239310 19239599 -100505299 + AluJb SINE Alu 1 288 -24 405 55 0 0 chr13 19240282 19240337 -100504561 - L1PB1 LINE L1 -3 6148 6094 2404 86 0 9 chr13 19240338 19240653 -100504245 - AluSx SINE Alu 0 312 1 2239 157 86 80 chr13 19240654 19240772 -100504126 - L1MB4 LINE L1 -43 6137 6021 439 152 248 38 chr13 19240772 19240877 -100504021 - FLAM_A SINE Alu -5 128 2 2239 157 86 80 chr13 19240877 19241349 -100503549 - L1MB4 LINE L1 -159 6021 5543 837 194 15 77 chr13 19242092 19242152 -100502746 - MLT2C1 LTR ERVL -4 393 331 2541 65 0 3 chr13 19242152 19242458 -100502440 + AluSg SINE Alu 2 306 -4 837 194 15 77 chr13 19242458 19242730 -100502168 - MLT2C1 LTR ERVL -66 331 18 419 202 121 0 chr13 19242988 19243087 -100501811 + Tigger4(Zombi) DNA MER2_type 2 112 -2619 1302 71 0 0 chr13 19243092 19243246 -100501652 - AluSg/x SINE Alu -11 301 148 1100 168 58 0 chr13 19243246 19243454 -100501444 + Tigger4(Zombi) DNA MER2_type 2511 2730 -1 2101 101 3 42 chr13 19243538 19243844 -100501054 - AluSx SINE Alu -17 295 2 387 242 73 84 chr13 19244014 19244087 -100500811 - MER104 DNA Tc2 -1720 178 106 2264 88 7 14 chr13 19244087 19244381 -100500517 + AluSx SINE Alu 1 292 -20 387 242 73 84 chr13 19244381 19244485 -100500413 - MER104 DNA Tc2 -1792 106 3 252 246 304 7 chr13 19246235 19246373 -100498525 + MIR SINE MIR 81 259 -3 370 238 0 12 chr13 19247520 19247600 -100497298 + Tigger5 DNA MER2_type 1 79 -2244 280 307 0 0 chr13 19247603 19247678 -100497220 - Tigger5 DNA MER2_type -7 2316 2242 * 356 197 56 0 chr13 19247672 19247743 -100497155 + Tigger5 DNA MER2_type 2246 2320 -3 2172 118 23 0 chr13 19248661 19248965 -100495933 + AluSx SINE Alu 1 311 -1 2162 102 0 0 chr13 19249004 19249278 -100495620 + AluSg SINE Alu 1 274 -36 231 36 0 0 chr13 19249280 19249308 -100495590 + (CAAAA)n Simple_repeat Simple_repeat 2 29 0 191 326 119 47 chr13 19249359 19249595 -100495303 - L2 LINE L2 -25 3247 2995 330 213 185 0 chr13 19249848 19249956 -100494942 + MIR SINE MIR 117 244 -18 353 274 85 81 chr13 19249999 19250247 -100494651 - L2 LINE L2 -52 3261 3013 344 206 103 59 chr13 19250248 19250384 -100494514 - MLT1K LTR MaLR -2 586 445 327 267 204 0 chr13 19250664 19250855 -100494043 - L2 LINE L2 -338 2976 2747 2812 83 8 0 chr13 19251046 19251406 -100493492 + THE1B LTR MaLR 2 364 0 887 269 201 5 chr13 19251406 19251845 -100493053 + L2 LINE L2 1689 2213 -1101 27 29 0 0 chr13 19251945 19251979 -100492919 + AT_rich Low_complexity Low_complexity 1 34 0 1832 74 0 0 chr13 19253435 19253651 -100491247 - AluSc SINE Alu -13 296 81 1864 158 3 0 chr13 19254369 19254654 -100490244 - AluJb SINE Alu -26 286 1 270 73 0 0 chr13 19254841 19254882 -100490016 + (TTTA)n Simple_repeat Simple_repeat 2 42 0 1313 160 0 50 chr13 19254885 19255123 -100489775 - AluJo SINE Alu -30 282 57 707 212 8 0 chr13 19255425 19255557 -100489341 + FLAM_A SINE Alu 1 133 0 246 282 58 0 chr13 19255888 19255991 -100488907 + L1ME LINE L1 5675 5783 -338 2349 86 0 10 chr13 19256239 19256540 -100488358 + AluSq SINE Alu 1 298 -15 468 289 0 0 chr13 19256540 19256720 -100488178 + (TA)n Simple_repeat Simple_repeat 1 180 0 225 239 0 0 chr13 19256773 19256819 -100488079 - L1MC4 LINE L1 -1339 6703 6658 247 309 0 0 chr13 19256845 19256942 -100487956 - L1MC4 LINE L1 -1327 6668 6612 201 268 0 0 chr13 19256945 19256986 -100487912 + (CATA)n Simple_repeat Simple_repeat 4 44 0 241 267 35 12 chr13 19256987 19257073 -100487825 + L1MC4 LINE L1 6614 6701 -1341 201 195 0 0 chr13 19257076 19257117 -100487781 + (TATATG)n Simple_repeat Simple_repeat 2 42 0 2886 16 0 0 chr13 19257630 19257941 -100486957 + AluYb8 SINE Alu 1 311 -7 1978 136 71 0 chr13 19258093 19258417 -100486481 - MER7A DNA MER2_type 0 346 2 2204 101 3 13 chr13 19259196 19259502 -100485396 + AluSg SINE Alu 6 308 -2 1114 135 29 48 chr13 19259871 19260078 -100484820 - MER3 DNA MER1_type 0 209 7 367 260 185 33 chr13 19260194 19260621 -100484277 - L1ME4a LINE L1 -68 6053 5562 299 170 20 0 chr13 19261040 19261140 -100483758 - L1ME4a LINE L1 -731 5439 5365 2093 106 14 7 chr13 19261147 19261439 -100483459 - AluSx SINE Alu -18 294 1 2533 41 3 0 chr13 19261444 19261736 -100483162 - AluY SINE Alu -17 294 2 1691 138 36 56 chr13 19263849 19264153 -100480745 + AluSx SINE Alu 1 298 -14 367 175 299 0 chr13 19264211 19264308 -100480590 + FLAM_A SINE Alu 1 126 -7 1974 112 4 4 chr13 19264316 19264583 -100480315 + AluSx SINE Alu 1 267 -45 988 102 0 0 chr13 19264707 19264835 -100480063 + AluSq/x SINE Alu 8 135 -177 1851 126 3 50 chr13 19264835 19265137 -100479761 + AluSx SINE Alu 1 288 -24 34 42 0 0 chr13 19265140 19265188 -100479710 + AT_rich Low_complexity Low_complexity 1 48 0 582 89 0 170 chr13 19265445 19265493 -100479405 + L1MA3 LINE L1 6093 6148 -157 2191 110 0 13 chr13 19265493 19265793 -100479105 + AluSc SINE Alu 1 296 -13 582 89 0 170 chr13 19265793 19265805 -100479093 + L1MA3 LINE L1 6148 6160 -145 1424 175 110 0 chr13 19265805 19266068 -100478830 + AluJb SINE Alu 1 292 -20 582 89 0 170 chr13 19266068 19266141 -100478757 + L1MA3 LINE L1 6160 6204 -101 491 150 62 0 chr13 19266288 19266368 -100478530 + FRAM SINE Alu 64 148 -28 739 193 7 0 chr13 19266379 19266514 -100478384 + FLAM_C SINE Alu 2 137 -6 572 125 0 0 chr13 19266708 19266796 -100478102 - AluJo SINE Alu -11 301 214 975 152 0 7 chr13 19266796 19266947 -100477951 - AluJo SINE Alu -162 150 1 477 127 0 13 chr13 19266998 19267077 -100477821 - AluJ/FRAM SINE Alu -9 303 226 1953 132 21 0 chr13 19267112 19267399 -100477499 + AluSx SINE Alu 2 294 -18 2014 149 0 0 chr13 19267576 19267865 -100477033 + AluSx SINE Alu 4 292 -20 201 279 128 0 chr13 19268169 19268255 -100476643 - MIR SINE MIR -74 188 92 2569 77 0 0 chr13 19268384 19268694 -100476204 - AluY SINE Alu -1 310 1 182 302 38 0 chr13 19268932 19268985 -100475913 - L2 LINE L2 -200 3072 3018 21 71 0 0 chr13 19269186 19269228 -100475670 + AT_rich Low_complexity Low_complexity 1 42 0 876 206 11 17 chr13 19269291 19269466 -100475432 + FRAM SINE Alu 1 173 -3 7193 56 8 0 chr13 19269471 19269699 -100475199 + L1PA7 LINE L1 4771 4996 -1158 2333 64 0 48 chr13 19269699 19270010 -100474888 + AluY SINE Alu 1 296 -15 7193 56 8 0 chr13 19270010 19271162 -100473736 + L1PA7 LINE L1 4996 6154 0 2393 83 0 13 chr13 19271167 19271468 -100473430 + AluSp SINE Alu 1 297 -16 216 273 57 23 chr13 19271763 19271851 -100473047 + L2 LINE L2 1177 1267 -2047 25 0 0 0 chr13 19271851 19271876 -100473022 + AT_rich Low_complexity Low_complexity 1 25 0 7667 25 1 225 chr13 19271876 19273250 -100471648 - SVA Other Other 0 1386 321 2392 145 75 91 chr13 19273350 19273833 -100471065 + Charlie1 DNA MER1_type 2138 2610 -151 1535 184 3 51 chr13 19273833 19274018 -100470880 - AluJo SINE Alu -12 300 135 2231 90 3 17 chr13 19274018 19274317 -100470581 + AluY SINE Alu 1 295 -16 1535 184 3 51 chr13 19274317 19274446 -100470452 - AluJo SINE Alu -177 135 1 2392 145 75 91 chr13 19274446 19274577 -100470321 + Charlie1 DNA MER1_type 2610 2742 -19 199 204 91 0 chr13 19274653 19274697 -100470201 + L2 LINE L2 3263 3310 -3 784 105 26 20 chr13 19275687 19275840 -100469058 + CT-rich Low_complexity Low_complexity 3 156 0 1902 166 3 16 chr13 19275843 19276156 -100468742 - AluJb SINE Alu -3 309 1 209 373 63 24 chr13 19276867 19276993 -100467905 - L2 LINE L2 0 3272 3142 2249 120 3 0 chr13 19277054 19277354 -100467544 + AluSx SINE Alu 1 301 -11 254 143 24 0 chr13 19277469 19277511 -100467387 + L1MC5 LINE L1 7182 7224 -737 21 0 0 0 chr13 19277542 19277563 -100467335 + AT_rich Low_complexity Low_complexity 1 21 0 860 188 24 42 chr13 19277620 19277833 -100467065 + L1MC5 LINE L1 7259 7467 -494 202 182 0 0 chr13 19277864 19277897 -100467001 + (CA)n Simple_repeat Simple_repeat 2 34 0 3812 158 64 97 chr13 19277898 19278822 -100466076 + MER21A LTR ERV1 13 905 -26 225 275 82 48 chr13 19278896 19279165 -100465733 + L1MC5 LINE L1 7502 7779 -182 3624 172 28 38 chr13 19279174 19279936 -100464962 + L1MB8 LINE L1 5374 6127 -51 436 309 85 5 chr13 19280015 19280203 -100464695 + MIR SINE MIR 29 231 -31 2220 127 0 0 chr13 19280230 19280530 -100464368 - AluSx SINE Alu -12 300 1 23 0 0 0 chr13 19281293 19281316 -100463582 + AT_rich Low_complexity Low_complexity 1 23 0 213 301 21 11 chr13 19282601 19282694 -100462204 + MIR SINE MIR 20 113 -149 242 118 97 54 chr13 19283168 19283261 -100461637 + MER63 DNA MER1_type 875 971 -91 2813 165 104 140 chr13 19283261 19283898 -100461000 - L1MC3 LINE L1 -13 7772 7117 287 209 15 15 chr13 19283898 19283965 -100460933 - MLT1F1 LTR MaLR -459 108 42 2813 165 104 140 chr13 19283965 19284314 -100460584 - L1MC3 LINE L1 -668 7117 6757 1440 281 67 25 chr13 19284336 19284931 -100459967 - L1MEc LINE L1 -5746 650 31 513 158 0 0 chr13 19285268 19285350 -100459548 + AluSg/x SINE Alu 218 299 -11 5630 146 44 29 chr13 19285481 19286732 -100458166 - L1MA9 LINE L1 0 6312 5043 306 143 0 0 chr13 19286730 19286779 -100458119 + L1MA9 LINE L1 4989 5037 -1109 * 638 311 65 26 chr13 19286782 19287200 -100457698 + L2 LINE L2 1033 1466 -1848 5072 84 1 3 chr13 19287343 19288012 -100456886 - THE1A-int LTR MaLR -912 668 1 2729 86 11 0 chr13 19288012 19288363 -100456535 - THE1A LTR MaLR 0 355 1 331 244 118 16 chr13 19288384 19288511 -100456387 - L2 LINE L2 -940 2374 2235 2190 168 7 30 chr13 19288638 19289042 -100455856 + MSTD LTR MaLR 2 396 0 831 216 52 43 chr13 19289269 19289499 -100455399 - MLT1A1 LTR MaLR 0 365 134 296 95 24 0 chr13 19289499 19289541 -100455357 - MLT1A1 LTR MaLR 0 457 415 1449 83 0 0 chr13 19289541 19289734 -100455164 + L1MA2 LINE L1 6112 6304 0 1165 180 50 116 chr13 19289754 19290116 -100454782 - MLT1A1 LTR MaLR -25 340 3 2846 192 33 6 chr13 19290132 19290652 -100454246 - MLT1A1-int LTR MaLR -6 1729 1196 1025 218 92 23 chr13 19290654 19290916 -100453982 - MLT2B3 LTR ERVL -237 317 38 419 171 12 37 chr13 19290947 19291029 -100453869 - MLT2B3 LTR ERVL -472 82 3 * 912 121 7 7 chr13 19291029 19291169 -100453729 - MLT1A1 LTR MaLR -225 140 1 2207 109 3 13 chr13 19291314 19291618 -100453280 - AluSx SINE Alu -11 301 1 918 198 0 0 chr13 19291678 19291840 -100453058 - FAM SINE Alu -13 162 1 21 36 0 0 chr13 19291963 19291991 -100452907 + AT_rich Low_complexity Low_complexity 1 28 0 327 311 0 0 chr13 19292359 19292449 -100452449 - L1MC4 LINE L1 -1339 6703 6614 204 217 0 0 chr13 19292461 19292507 -100452391 + (TA)n Simple_repeat Simple_repeat 2 47 0 236 233 0 17 chr13 19292510 19292570 -100452328 - L1MCa LINE L1 -4362 2064 2006 260 167 93 0 chr13 19292615 19292669 -100452229 - L1MCa LINE L1 -4362 2064 2006 567 212 24 12 chr13 19292680 19292845 -100452053 + (CATATA)n Simple_repeat Simple_repeat 2 168 0 232 200 0 0 chr13 19292852 19292907 -100451991 - L1MC4 LINE L1 -1339 6703 6649 326 292 0 0 chr13 19292934 19293023 -100451875 - L1MC4 LINE L1 -1339 6703 6615 250 296 23 0 chr13 19293048 19293136 -100451762 - L1MC4 LINE L1 -1339 6703 6614 238 309 0 0 chr13 19293189 19293278 -100451620 + L1MD3 LINE L1 6612 6668 -1327 254 311 0 15 chr13 19293279 19293411 -100451487 + (TATG)n Simple_repeat Simple_repeat 1 130 0 236 217 0 0 chr13 19293416 19293462 -100451436 + L1MC4 LINE L1 6658 6703 -1339 386 229 0 8 chr13 19293469 19293581 -100451317 + (TA)n Simple_repeat Simple_repeat 2 113 0 2361 80 0 13 chr13 19293581 19293883 -100451015 - AluSq SINE Alu -15 298 1 427 303 89 10 chr13 19293923 19294164 -100450734 - L1ME LINE L1 -301 5869 5613 2620 45 0 13 chr13 19295273 19295584 -100449314 - AluY SINE Alu -4 307 1 540 277 31 67 chr13 19297201 19297425 -100447473 + L1ME3A LINE L1 5691 5906 -264 820 210 112 33 chr13 19297472 19297519 -100447379 + MSTA LTR MaLR 1 43 -385 2240 130 16 24 chr13 19297519 19297896 -100447002 + THE1C LTR MaLR 1 374 -1 820 210 112 33 chr13 19297896 19298062 -100446836 + MSTA LTR MaLR 43 231 -197 * 1176 140 34 0 chr13 19298047 19298225 -100446673 + MSTA LTR MaLR 245 428 0 9752 167 16 4 chr13 19298225 19299854 -100445044 + MSTA-int LTR MaLR 1 1649 -2 1992 148 154 0 chr13 19299862 19300233 -100444665 + MSTA LTR MaLR 1 428 0 248 203 27 0 chr13 19301346 19301420 -100443478 + CT-rich Low_complexity Low_complexity 3 78 0 450 0 0 0 chr13 19301640 19301690 -100443208 + (GGAA)n Simple_repeat Simple_repeat 1 50 0 3473 156 84 90 chr13 19302051 19302498 -100442400 + L1MDa LINE L1 944 1392 -5148 2134 127 0 13 chr13 19302498 19302806 -100442092 + AluSx SINE Alu 1 304 -8 3473 156 84 90 chr13 19302806 19302827 -100442071 + L1MDa LINE L1 1392 1412 -5128 2268 107 0 0 chr13 19302827 19303127 -100441771 + AluSc SINE Alu 1 300 -9 3473 156 84 90 chr13 19303127 19303303 -100441595 + L1MDa LINE L1 1412 1588 -4952 1877 101 0 0 chr13 19303303 19303573 -100441325 + AluSg SINE Alu 36 305 0 3473 156 84 90 chr13 19303573 19303855 -100441043 + L1MDa LINE L1 1588 1869 -4671 2478 87 0 0 chr13 19303855 19304154 -100440744 + AluSg SINE Alu 1 299 -11 3473 156 84 90 chr13 19304154 19304249 -100440649 + L1MDa LINE L1 1869 1963 -4577 1752 174 0 0 chr13 19304249 19304577 -100440321 + AluJb SINE Alu 1 328 0 287 238 158 26 chr13 19304737 19304851 -100440047 - MLT1K LTR MaLR -358 230 87 609 239 15 27 chr13 19304942 19305111 -100439787 + L1M4 LINE L1 3455 3623 -2523 2021 127 27 0 chr13 19305111 19305403 -100439495 + AluSx SINE Alu 1 300 -12 609 239 15 27 chr13 19305403 19305455 -100439443 + L1M4 LINE L1 3623 3674 -2472 429 207 35 26 chr13 19305462 19305578 -100439320 - L1ME LINE L1 -374 5792 5676 2313 93 0 3 chr13 19305587 19305889 -100439009 - AluSg SINE Alu -9 301 1 1078 83 0 0 chr13 19305889 19306022 -100438876 - AluSc SINE Alu -176 133 1 1449 202 84 41 chr13 19306022 19306538 -100438360 - L1ME LINE L1 -676 5490 4998 2181 104 0 17 chr13 19306538 19306857 -100438041 + AluSq SINE Alu 1 314 0 1449 202 84 41 chr13 19306857 19306888 -100438010 - L1ME LINE L1 -1168 4998 4970 2521 57 0 0 chr13 19306888 19307185 -100437713 + AluY SINE Alu 1 297 -14 1449 202 84 41 chr13 19307185 19307196 -100437702 - L1ME LINE L1 -1196 4970 4961 2607 51 0 13 chr13 19307196 19307510 -100437388 + AluY SINE Alu 2 311 0 963 114 0 0 chr13 19307928 19308059 -100436839 + AluSg/x SINE Alu 162 292 -18 1253 211 29 76 chr13 19308062 19308206 -100436692 - L1ME LINE L1 -1214 4932 4783 1793 145 9 52 chr13 19308206 19308530 -100436368 - AluJb SINE Alu -2 310 1 1253 211 29 76 chr13 19308530 19308765 -100436133 - L1ME LINE L1 -1363 4783 4571 1717 143 48 0 chr13 19308765 19309037 -100435861 + AluJb SINE Alu 1 285 -27 2816 240 79 9 chr13 19309056 19309270 -100435628 - L1ME LINE L1 -2047 4099 3901 243 0 0 0 chr13 19309270 19309297 -100435601 + (TG)n Simple_repeat Simple_repeat 1 27 0 2816 240 79 9 chr13 19309297 19309994 -100434904 - L1ME LINE L1 -2245 3901 3124 2215 93 3 42 chr13 19310043 19310408 -100434490 + AluSp SINE Alu 1 313 0 2329 85 3 0 chr13 19310436 19310766 -100434132 + AluSp SINE Alu 1 331 0 1507 183 4 11 chr13 19311324 19311586 -100433312 + AluJo SINE Alu 29 288 -24 215 302 115 98 chr13 19312142 19312437 -100432461 + L2 LINE L2 2894 3193 -79 2298 91 30 0 chr13 19316575 19316873 -100428025 + AluSg SINE Alu 1 307 -3 381 259 189 0 chr13 19317398 19317541 -100427357 + MER5B DNA MER1_type 6 175 -3 1463 145 13 4 chr13 19317585 19317813 -100427085 + AluSg/x SINE Alu 83 312 0 415 188 12 0 chr13 19317841 19317926 -100426972 - MER5A DNA MER1_type -84 105 20 353 258 98 8 chr13 19318451 19318583 -100426315 + MLT1I LTR MaLR 266 409 0 2330 133 80 15 chr13 19318806 19319206 -100425692 + MSTA LTR MaLR 1 426 -2 247 247 84 48 chr13 19320540 19320706 -100424192 - L1ME4a LINE L1 -11 6110 5939 450 312 201 26 chr13 19321007 19321395 -100423503 - L1ME4a LINE L1 -357 5813 5355 576 263 65 11 chr13 19321673 19321859 -100423039 + MIR SINE MIR 61 256 -6 1516 175 7 52 chr13 19322411 19322720 -100422178 - AluJo SINE Alu -17 295 1 25 0 0 0 chr13 19322895 19322920 -100421978 + AT_rich Low_complexity Low_complexity 1 25 0 872 241 82 53 chr13 19323332 19323672 -100421226 + MLT1G1 LTR MaLR 14 363 -232 301 242 45 0 chr13 19323710 19323776 -100421122 + MLT1G1 LTR MaLR 510 578 -12 2032 157 3 3 chr13 19325227 19325539 -100419359 - AluJb SINE Alu 0 312 1 204 116 93 0 chr13 19325661 19325704 -100419194 - L2 LINE L2 0 3313 3267 21 36 0 0 chr13 19325784 19325812 -100419086 + AT_rich Low_complexity Low_complexity 1 28 0 2401 86 3 0 chr13 19326603 19326905 -100417993 - AluY SINE Alu -8 303 1 536 278 52 32 chr13 19327798 19328050 -100416848 - MIR SINE MIR -1 261 5 319 250 35 59 chr13 19328632 19328772 -100416126 - MIR SINE MIR -55 153 14 446 250 196 0 chr13 19330017 19330165 -100414733 - MIR SINE MIR -61 201 25 412 209 146 0 chr13 19330229 19330339 -100414559 + MER103 DNA DNA 3 128 -38 345 285 7 35 chr13 19330690 19330834 -100414064 - MIR SINE MIR -56 206 67 697 226 6 24 chr13 19331121 19331289 -100413609 + L1MA9 LINE L1 3549 3713 -2433 7665 33 0 0 chr13 19331456 19332981 -100411917 - L1PA4 LINE L1 -3 6152 4629 3524 156 53 3 chr13 19332983 19333624 -100411274 + L1MA9 LINE L1 3697 4369 -1777 1244 167 27 0 chr13 19333619 19333841 -100411057 + L1MA9 LINE L1 5561 5788 -524 * 224 219 31 16 chr13 19333841 19333905 -100410993 + (TATATG)n Simple_repeat Simple_repeat 3 67 0 2997 134 27 17 chr13 19333930 19334453 -100410445 + L1MA9 LINE L1 5763 6290 -22 221 281 0 18 chr13 19335075 19335132 -100409766 + GA-rich Low_complexity Low_complexity 1 56 0 333 0 0 0 chr13 19335496 19335533 -100409365 + (TG)n Simple_repeat Simple_repeat 1 37 0 255 31 0 0 chr13 19335532 19335564 -100409334 + (GA)n Simple_repeat Simple_repeat 1 32 0 * 649 221 126 26 chr13 19335863 19336053 -100408845 + MIR SINE MIR 36 244 -18 413 299 34 0 chr13 19337067 19337214 -100407684 + MIR SINE MIR 69 220 -42 210 229 0 0 chr13 19337839 19337887 -100407011 + L2 LINE L2 3223 3270 -2 188 93 186 0 chr13 19338409 19338452 -100406446 - MIR SINE MIR -96 166 116 2490 87 0 0 chr13 19338676 19338986 -100405912 - AluSg SINE Alu 0 310 1 22 35 0 0 chr13 19339115 19339144 -100405754 + AT_rich Low_complexity Low_complexity 1 29 0 1899 106 0 109 chr13 19339421 19339760 -100405138 + AluSc SINE Alu 3 304 -5 685 234 156 29 chr13 19339960 19340165 -100404733 - MIR SINE MIR -21 241 11 25 0 0 0 chr13 19341242 19341267 -100403631 + GC_rich Low_complexity Low_complexity 1 25 0 2191 184 68 0 chr13 19344992 19345377 -100399521 - LTR57 LTR ERVL 0 411 1 197 321 19 0 chr13 19345552 19345605 -100399293 - L2 LINE L2 -81 3191 3138 1278 219 4 0 chr13 19345895 19346141 -100398757 + AluJo SINE Alu 39 285 -27 2209 100 7 0 chr13 19346572 19346916 -100397982 + AluSq SINE Alu 1 346 0 211 326 0 35 chr13 19347254 19347340 -100397558 + L2 LINE L2 3190 3272 0 311 277 152 0 chr13 19347519 19347631 -100397267 + MIR SINE MIR 124 252 -10 464 280 74 16 chr13 19348057 19348246 -100396652 + L1ME LINE L1 5615 5814 -307 22 0 0 0 chr13 19348284 19348306 -100396592 + AT_rich Low_complexity Low_complexity 1 22 0 2486 81 0 0 chr13 19348306 19348616 -100396282 - AluY SINE Alu -1 310 1 585 226 39 13 chr13 19348745 19348762 -100396136 - L1MA10 LINE L1 0 6334 6318 2500 218 50 23 chr13 19348762 19348912 -100395986 - L1ME2 LINE L1 -9 6155 6010 297 0 0 0 chr13 19348912 19348945 -100395953 + (CA)n Simple_repeat Simple_repeat 2 34 0 2500 218 50 23 chr13 19348945 19349400 -100395498 - L1ME2 LINE L1 -154 6010 5534 277 250 125 11 chr13 19349498 19349586 -100395312 + MIR SINE MIR 149 246 -16 23 0 0 0 chr13 19349844 19349867 -100395031 + AT_rich Low_complexity Low_complexity 1 23 0 22 0 0 0 chr13 19351033 19351055 -100393843 + AT_rich Low_complexity Low_complexity 1 22 0 2150 122 14 0 chr13 19351130 19351426 -100393472 - AluSx SINE Alu -12 300 1 349 259 12 0 chr13 19351573 19351658 -100393240 + MIR SINE MIR 56 141 -121 1034 133 24 30 chr13 19351776 19351975 -100392923 + AluSg/x SINE Alu 133 312 0 331 259 0 86 chr13 19352046 19352162 -100392736 + MIR SINE MIR 87 192 -70 666 158 62 159 chr13 19353304 19353416 -100391482 + L1M4 LINE L1 5089 5210 -1034 2248 86 14 0 chr13 19353416 19353757 -100391141 + AluSp SINE Alu 2 346 0 666 158 62 159 chr13 19353757 19353845 -100391053 + L1M4 LINE L1 5210 5305 -939 2310 103 0 0 chr13 19353845 19354163 -100390735 + AluSq SINE Alu 1 313 0 666 158 62 159 chr13 19354163 19354217 -100390681 + L1M4 LINE L1 5305 5363 -881 1952 155 7 0 chr13 19354217 19354514 -100390384 + AluSx SINE Alu 1 299 -13 666 158 62 159 chr13 19354514 19354525 -100390373 + L1M4 LINE L1 5363 5373 -871 2214 105 3 16 chr13 19354525 19354829 -100390069 + AluSx SINE Alu 11 310 -2 666 158 62 159 chr13 19354829 19354932 -100389966 + L1M4 LINE L1 5373 5428 -816 6168 128 27 44 chr13 19355027 19356072 -100388826 - L1PA15 LINE L1 0 6165 5118 1980 121 10 13 chr13 19356072 19356370 -100388528 - AluSq SINE Alu -16 297 1 6168 128 27 44 chr13 19356370 19356558 -100388340 - L1PA15 LINE L1 -1047 5118 4928 26 30 0 0 chr13 19357229 19357262 -100387636 + AT_rich Low_complexity Low_complexity 1 33 0 924 280 147 18 chr13 19357428 19357465 -100387433 - L1MC4a LINE L1 -605 5557 5526 189 94 0 0 chr13 19357465 19357497 -100387401 + (TTTA)n Simple_repeat Simple_repeat 3 34 0 924 280 147 18 chr13 19357497 19358100 -100386798 - L1MC4a LINE L1 -636 5526 5186 317 222 161 61 chr13 19358105 19358285 -100386613 - HAL1 LINE L1 -1 2506 2309 392 167 0 13 chr13 19358310 19358388 -100386510 - HAL1 LINE L1 -302 2205 2129 1567 188 65 0 chr13 19358404 19358696 -100386202 - AluJo SINE Alu -1 311 1 21 36 0 0 chr13 19359094 19359122 -100385776 + AT_rich Low_complexity Low_complexity 1 28 0 11437 42 4 3 chr13 19359347 19361438 -100383460 - L1PA4 LINE L1 -5 6150 4055 318 67 0 0 chr13 19361847 19361892 -100383006 + (TCTA)n Simple_repeat Simple_repeat 4 48 0 1938 252 54 23 chr13 19361949 19362696 -100382202 - L1MC4 LINE L1 -139 7903 6884 * 3668 250 69 50 chr13 19362680 19363569 -100381329 - L1MC4 LINE L1 -1 8041 7113 1700 179 0 10 chr13 19363569 19363860 -100381038 - AluJb SINE Alu -24 288 1 3668 250 69 50 chr13 19363860 19364438 -100380460 - L1MC4 LINE L1 -929 7113 6547 1400 130 84 0 chr13 19364447 19364685 -100380213 - Tigger2 DNA MER2_type -10 2708 2451 843 204 91 0 chr13 19364739 19364925 -100379973 - Tigger2 DNA MER2_type -1961 757 555 6151 150 20 35 chr13 19364927 19366436 -100378462 + L1MA3 LINE L1 4126 5636 -669 3837 120 31 55 chr13 19366617 19367292 -100377606 + L1MA3 LINE L1 5641 6299 -6 1272 187 5 0 chr13 19367303 19367517 -100377381 - Tigger2 DNA MER2_type -2155 563 349 21 36 0 0 chr13 19367517 19367545 -100377353 + AT_rich Low_complexity Low_complexity 1 28 0 444 271 25 0 chr13 19368934 19369056 -100375842 + L1M4 LINE L1 4259 4383 -1763 1825 177 3 16 chr13 19369056 19369372 -100375526 + AluJb SINE Alu 1 312 0 1824 240 17 2 chr13 19369374 19369393 -100375505 - L1M4 LINE L1 -1278 4868 4851 1730 171 3 3 chr13 19369393 19369685 -100375213 + AluJo SINE Alu 1 292 -20 1824 240 17 2 chr13 19369685 19370132 -100374766 - L1M4 LINE L1 -1295 4851 4395 1021 168 25 20 chr13 19370135 19370332 -100374566 - AluJo SINE Alu -25 287 90 707 123 0 0 chr13 19370381 19370487 -100374411 + MLT2B3 LTR ERVL 1 106 -448 2256 56 70 0 chr13 19372149 19372436 -100372462 - LTR8 LTR ERV1 -384 307 1 1601 74 32 9 chr13 19372436 19372652 -100372246 - HUERS-P1 LTR ERV1 0 6263 6043 356 298 79 0 chr13 19373615 19373729 -100371169 - L2 LINE L2 -1 3312 3190 1647 185 4 0 chr13 19374817 19375093 -100369805 - L1PB4 LINE L1 -12 6144 5868 1961 168 7 3 chr13 19375543 19375852 -100369046 - AluSx SINE Alu -2 310 1 24 32 0 0 chr13 19376579 19376610 -100368288 + AT_rich Low_complexity Low_complexity 1 31 0 27 29 0 0 chr13 19376653 19376687 -100368211 + AT_rich Low_complexity Low_complexity 1 34 0 298 301 48 0 chr13 19377039 19377142 -100367756 - Charlie8 DNA MER1_type -2275 142 35 1307 214 176 8 chr13 19378093 19378491 -100366407 - MLT1C LTR MaLR -2 465 1 1565 179 71 24 chr13 19378492 19378832 -100366066 - MLT1C-int LTR MaLR -1 1370 1015 295 234 64 53 chr13 19380153 19380247 -100364651 + L2 LINE L2 3177 3271 -1 24 32 0 0 chr13 19380883 19380914 -100363984 + AT_rich Low_complexity Low_complexity 1 31 0 394 344 78 9 chr13 19381214 19381432 -100363466 + MIR SINE MIR 20 252 -10 378 305 85 17 chr13 19381658 19381835 -100363063 - MIR SINE MIR 0 262 74 219 333 92 0 chr13 19381836 19381923 -100362975 - MIR SINE MIR 0 262 168 21 36 0 0 chr13 19381986 19382014 -100362884 + AT_rich Low_complexity Low_complexity 1 28 0 2484 63 0 7 chr13 19382014 19382313 -100362585 + AluSx SINE Alu 1 297 -15 810 136 8 15 chr13 19383119 19383251 -100361647 - FLAM_C SINE Alu -1 142 12 4183 85 60 21 chr13 19383463 19383914 -100360984 - L1MA2 LINE L1 0 6304 5821 2009 128 16 16 chr13 19383914 19384218 -100360680 - AluSc SINE Alu -5 304 1 4183 85 60 21 chr13 19384218 19384387 -100360511 - L1MA2 LINE L1 -483 5821 5660 504 198 90 9 chr13 19384521 19384632 -100360266 - L2 LINE L2 -3 3310 3191 182 378 16 0 chr13 19384730 19384857 -100360041 - MIR SINE MIR -114 148 20 978 200 88 19 chr13 19384984 19385244 -100359654 - L1ME1 LINE L1 -25 6141 5864 1561 150 46 107 chr13 19385607 19385973 -100358925 - MER2 DNA MER2_type 0 344 1 271 118 97 65 chr13 19387670 19387763 -100357135 + MIR SINE MIR 112 207 -55 462 195 163 8 chr13 19389502 19389625 -100355273 + MER5A DNA MER1_type 48 189 0 207 327 37 28 chr13 19389687 19389794 -100355104 - MIR SINE MIR -148 114 7 1857 169 14 0 chr13 19390936 19391231 -100353667 + AluJb SINE Alu 1 299 -13 554 279 32 36 chr13 19391236 19391487 -100353411 - MLT1J2 LTR MaLR -200 250 1 1927 329 77 39 chr13 19392803 19395367 -100349531 + HERVL LTR ERVL 1469 4189 -1465 22 0 0 0 chr13 19395373 19395395 -100349503 + AT_rich Low_complexity Low_complexity 1 22 0 324 0 0 0 chr13 19395563 19395599 -100349299 + (TG)n Simple_repeat Simple_repeat 1 36 0 2049 160 24 79 chr13 19395697 19395848 -100349050 + MLT1C LTR MaLR 36 194 -273 2224 129 0 7 chr13 19395848 19396158 -100348740 + AluSg SINE Alu 1 308 -2 2049 160 24 79 chr13 19396158 19396463 -100348435 + MLT1C LTR MaLR 194 467 0 1835 185 26 11 chr13 19396491 19396870 -100348028 - L1MA9 LINE L1 0 6312 5928 5922 162 51 11 chr13 19396872 19398017 -100346881 - L1MA9 LINE L1 -461 5851 4605 2117 141 7 0 chr13 19398017 19398322 -100346576 - AluSx SINE Alu -5 307 1 5922 162 51 11 chr13 19398322 19398931 -100345967 - L1MA9 LINE L1 -1707 4605 4022 656 181 49 14 chr13 19399155 19399299 -100345599 + L1PA7 LINE L1 6006 6154 0 213 292 62 0 chr13 19399353 19399418 -100345480 + MIR SINE MIR 77 145 -117 3042 157 16 53 chr13 19399460 19400105 -100344793 + L1MB3 LINE L1 5284 5904 -279 1589 123 7 45 chr13 19402780 19403072 -100341826 + L1MB3 LINE L1 5894 6174 -9 532 299 51 42 chr13 19404033 19404250 -100340648 + MIR SINE MIR 16 234 -28 198 0 0 0 chr13 19404250 19404272 -100340626 + (GA)n Simple_repeat Simple_repeat 2 23 0 218 171 0 0 chr13 19404355 19404390 -100340508 + (CAT)n Simple_repeat Simple_repeat 2 36 0 392 292 28 14 chr13 19405167 19405311 -100339587 - MIR SINE MIR -8 254 109 267 261 43 22 chr13 19405944 19406036 -100338862 + L2 LINE L2 2266 2359 -955 352 321 169 50 chr13 19406430 19406885 -100338013 + L2 LINE L2 2236 2744 -570 1592 111 111 0 chr13 19406900 19407162 -100337736 + MLT2D LTR ERVL 76 366 -48 180 49 98 0 chr13 19407191 19407232 -100337666 + (CATATA)n Simple_repeat Simple_repeat 3 47 0 1016 262 95 11 chr13 19407273 19407620 -100337278 - MLT1J LTR MaLR -135 376 1 377 319 28 14 chr13 19409563 19409707 -100335191 + MIR3 SINE MIR 33 178 -30 370 357 51 5 chr13 19410269 19410465 -100334433 - L2 LINE L2 -3 3310 3106 451 271 170 37 chr13 19411024 19411242 -100333656 - L2 LINE L2 -610 2704 2458 1012 263 89 13 chr13 19411535 19411851 -100333047 - LTR16A LTR ERVL 0 450 111 347 270 111 16 chr13 19412587 19412776 -100332122 - LTR16C LTR ERVL 0 491 285 230 157 196 0 chr13 19413291 19413342 -100331556 + MLT1J1 LTR MaLR 1 61 -385 309 250 132 62 chr13 19413461 19413605 -100331293 + MLT1J2 LTR MaLR 263 416 -34 292 266 237 7 chr13 19413652 19413789 -100331109 - MIR SINE MIR -63 145 14 1408 264 60 28 chr13 19414192 19414757 -100330141 + MLT1L LTR MaLR 33 615 0 262 346 45 6 chr13 19415069 19415225 -100329673 + L1ME LINE L1 5473 5634 -487 212 250 18 0 chr13 19416040 19416096 -100328802 + CT-rich Low_complexity Low_complexity 1 57 0 252 248 0 25 chr13 19416654 19416775 -100328123 + (TAA)n Simple_repeat Simple_repeat 1 118 0 255 200 11 111 chr13 19416858 19416948 -100327950 - MIR SINE MIR -100 162 82 266 306 105 0 chr13 19417228 19417352 -100327546 - MIR SINE MIR -54 208 72 239 209 30 15 chr13 19417434 19417501 -100327397 + CT-rich Low_complexity Low_complexity 3 70 0 1127 173 10 19 chr13 19417604 19417812 -100327086 - AluJo SINE Alu -106 206 1 472 279 53 16 chr13 19418597 19418659 -100326239 + MIR SINE MIR 16 74 -188 1795 141 50 7 chr13 19418659 19418958 -100325940 - AluSx SINE Alu 0 312 1 472 279 53 16 chr13 19418958 19419087 -100325811 + MIR SINE MIR 74 216 -46 508 314 34 64 chr13 19419124 19419328 -100325570 - MIR SINE MIR -3 259 62 327 48 0 0 chr13 19419433 19419475 -100325423 + 5S rRNA rRNA 1 42 -79 256 202 226 12 chr13 19419478 19419562 -100325336 - MIR SINE MIR -96 166 65 323 229 12 169 chr13 19419571 19419737 -100325161 - MIR SINE MIR -6 256 117 429 287 113 5 chr13 19420645 19420840 -100324058 + MIR SINE MIR 24 239 -23 205 274 74 42 chr13 19422714 19422809 -100322089 + MIR SINE MIR 113 210 -52 3930 123 76 8 chr13 19422910 19423249 -100321649 - L1MA8 LINE L1 -3 6288 5950 1348 257 127 9 chr13 19423249 19423783 -100321115 - L1PA6 LINE L1 -235 5919 5323 1064 154 9 23 chr13 19424068 19424288 -100320610 - MER47A DNA MER2_type -149 217 1 2263 100 0 3 chr13 19424515 19424805 -100320093 + AluSq SINE Alu 1 289 -24 3440 182 10 22 chr13 19426427 19426781 -100318117 - L1MB3 LINE L1 -10 6173 5829 2398 68 3 3 chr13 19426781 19427096 -100317802 - AluY SINE Alu 0 311 1 3440 182 10 22 chr13 19427096 19427412 -100317486 - L1MB3 LINE L1 -354 5829 5511 188 235 186 59 chr13 19427715 19427817 -100317081 + MIR SINE MIR 41 155 -107 2288 230 107 22 chr13 19428362 19428920 -100315978 - L1ME3A LINE L1 -76 6094 5454 2422 100 0 0 chr13 19428920 19429230 -100315668 - AluY SINE Alu -1 310 1 2288 230 107 22 chr13 19429230 19429428 -100315470 - L1ME3A LINE L1 -716 5454 5274 411 225 144 56 chr13 19430308 19430468 -100314430 - L2 LINE L2 -1 3312 3139 224 149 21 0 chr13 19431367 19431414 -100313484 + G-rich Low_complexity Low_complexity 1 48 0 2310 81 0 3 chr13 19431792 19432116 -100312782 + AluSg SINE Alu 1 323 0 1676 149 0 59 chr13 19432529 19432673 -100312225 + AluJo SINE Alu 1 121 -191 2026 102 0 39 chr13 19432673 19432956 -100311942 + AluSg SINE Alu 20 291 -19 1676 149 0 59 chr13 19432956 19433100 -100311798 + AluJo SINE Alu 121 272 -40 207 0 0 0 chr13 19433100 19433123 -100311775 + (TC)n Simple_repeat Simple_repeat 2 24 0 189 171 0 0 chr13 19433123 19433158 -100311740 + (CA)n Simple_repeat Simple_repeat 2 36 0 28 48 0 0 chr13 19433158 19433200 -100311698 + AT_rich Low_complexity Low_complexity 1 42 0 456 263 53 41 chr13 19433311 19433482 -100311416 - MER5B DNA MER1_type -2 176 4 4254 142 25 0 chr13 19433510 19434200 -100310698 + L1MC1 LINE L1 5622 6328 -5 13112 117 42 7 chr13 19438230 19438546 -100306352 + Tigger1 DNA MER2_type 1 305 -2113 204 40 0 0 chr13 19438546 19438571 -100306327 + (TC)n Simple_repeat Simple_repeat 2 26 0 13112 117 42 7 chr13 19438571 19440370 -100304528 + Tigger1 DNA MER2_type 305 2199 -219 1109 209 45 29 chr13 19440710 19441150 -100303748 - MER74A LTR ERVL -13 545 1 438 259 9 0 chr13 19441275 19441387 -100303511 - MLT2B1 LTR ERVL -407 113 1 887 254 44 20 chr13 19441948 19442196 -100302702 - L1MDa LINE L1 -5623 917 664 723 162 6 22 chr13 19442198 19442364 -100302534 + MSTC LTR MaLR 4 150 -215 274 274 63 11 chr13 19442483 19442578 -100302320 - HAL1b LINE L1 -56 1292 1193 347 263 50 0 chr13 19442607 19442687 -100302211 - L2 LINE L2 -4 3268 3185 1917 149 0 3 chr13 19442691 19442980 -100301918 + AluJb SINE Alu 1 288 -24 2079 119 36 3 chr13 19443056 19443358 -100301540 + AluSx SINE Alu 1 312 0 356 240 97 30 chr13 19443431 19443663 -100301235 + MER109 Unknown Unknown 2 1293 -1139 2492 61 0 26 chr13 19443739 19444050 -100300848 + AluY SINE Alu 1 303 -8 366 277 121 14 chr13 19444296 19444437 -100300461 + MER109 Unknown Unknown 650 805 -1627 1694 167 31 3 chr13 19444507 19444800 -100300098 + AluJo SINE Alu 1 301 -11 280 114 0 0 chr13 19444809 19444853 -100300045 + L1PA16 LINE L1 5940 5983 -183 642 153 18 9 chr13 19444854 19444965 -100299933 + L1PA16 LINE L1 6033 6144 -22 1024 111 0 21 chr13 19444972 19445116 -100299782 + AluJb SINE Alu 1 141 -171 23 0 0 0 chr13 19445149 19445172 -100299726 + AT_rich Low_complexity Low_complexity 1 23 0 1935 155 24 0 chr13 19445196 19445493 -100299405 + AluSq SINE Alu 1 304 -9 598 161 0 0 chr13 19445727 19445814 -100299084 - 5S rRNA rRNA -32 89 3 1220 146 66 134 chr13 19445860 19445966 -100298932 - MER2 DNA MER2_type -9 336 224 1938 89 16 104 chr13 19445966 19446282 -100298616 + AluSp SINE Alu 1 288 -25 1220 146 66 134 chr13 19446282 19446437 -100298461 - MER2 DNA MER2_type -121 224 102 1786 153 7 0 chr13 19446437 19446711 -100298187 - AluJb SINE Alu -33 279 4 1220 146 66 134 chr13 19446711 19446798 -100298100 - MER2 DNA MER2_type -243 102 11 294 145 81 48 chr13 19446754 19446816 -100298082 + MER2 DNA MER2_type 11 74 -271 * 551 260 98 86 chr13 19446900 19447484 -100297414 + MER109 Unknown Unknown 29 1789 -643 2371 90 0 3 chr13 19447706 19448005 -100296893 - AluSx SINE Alu -14 298 1 2010 115 3 34 chr13 19450155 19450450 -100294448 - AluSx SINE Alu -25 287 2 2026 141 0 0 chr13 19450768 19451066 -100293832 + AluSx SINE Alu 1 298 -14 228 240 147 0 chr13 19453755 19453830 -100291068 + MLT1E LTR MaLR 494 579 -14 1685 155 3 59 chr13 19453954 19454276 -100290622 - AluJb SINE Alu -8 304 1 239 220 40 0 chr13 19454942 19454992 -100289906 - AluJb SINE Alu -175 127 76 1812 176 20 20 chr13 19455192 19455498 -100289400 - AluJb SINE Alu -6 306 1 2344 79 7 3 chr13 19455726 19456031 -100288867 - AluY SINE Alu -5 306 1 2281 104 0 0 chr13 19456031 19456330 -100288568 - AluSg SINE Alu -11 299 1 2278 92 3 3 chr13 19456428 19456723 -100288175 + AluSc SINE Alu 1 295 -14 185 0 40 0 chr13 19456903 19456928 -100287970 + (TTTA)n Simple_repeat Simple_repeat 3 28 0 2415 63 0 0 chr13 19456935 19457221 -100287677 - AluY SINE Alu -24 287 2 574 286 84 0 chr13 19457964 19458142 -100286756 - MIR SINE MIR -6 256 64 2566 112 25 6 chr13 19459080 19459436 -100285462 + THE1B LTR MaLR 1 363 -1 497 252 0 41 chr13 19459642 19459765 -100285133 - L2 LINE L2 -4 3309 3192 374 323 132 44 chr13 19459890 19460074 -100284824 + L1MEc LINE L1 117 283 -6113 2199 99 0 53 chr13 19460074 19460397 -100284501 + AluSx SINE Alu 1 306 -6 374 323 132 44 chr13 19460397 19460735 -100284163 + L1MEc LINE L1 283 685 -5711 250 224 20 0 chr13 19460736 19460785 -100284113 + AluJ/monomer SINE Alu 1 50 -251 1277 268 71 72 chr13 19460795 19461063 -100283835 + L1MEc LINE L1 774 1041 -5355 2053 141 0 0 chr13 19461063 19461361 -100283537 + AluSx SINE Alu 1 298 -14 1277 268 71 72 chr13 19461361 19461950 -100282948 + L1MEc LINE L1 1041 1630 -4766 680 286 134 6 chr13 19462045 19462466 -100282432 + L1MEc LINE L1 1128 1618 -4766 2105 134 0 0 chr13 19462466 19462765 -100282133 - AluSx SINE Alu -13 299 1 680 286 134 6 chr13 19462765 19462842 -100282056 + L1MEc LINE L1 1618 1684 -4700 29 60 0 0 chr13 19463246 19463296 -100281602 + AT_rich Low_complexity Low_complexity 1 50 0 25 0 0 0 chr13 19463654 19463679 -100281219 + AT_rich Low_complexity Low_complexity 1 25 0 267 277 69 30 chr13 19463872 19463973 -100280925 - L2 LINE L2 -18 3295 3191 482 370 98 34 chr13 19464114 19464901 -100279997 - L2 LINE L2 -1519 1795 959 561 253 55 93 chr13 19465247 19465504 -100279394 - MER112 DNA MER1_type -6 254 8 400 248 83 110 chr13 19465548 19465766 -100279132 - MER102b DNA MER1_type -13 328 117 804 267 95 18 chr13 19466197 19466523 -100278375 + Tigger8 DNA MER2_type 109 459 -207 1821 188 7 0 chr13 19466534 19466838 -100278060 + AluJo SINE Alu 1 306 -6 527 141 0 13 chr13 19466965 19467043 -100277855 - AluJb SINE Alu -17 295 219 968 121 0 0 chr13 19467051 19467183 -100277715 - AluJb SINE Alu -180 132 1 22 0 0 0 chr13 19467234 19467256 -100277642 + AT_rich Low_complexity Low_complexity 1 22 0 603 172 49 8 chr13 19467397 19467519 -100277379 - FLAM_A SINE Alu -6 136 10 819 182 8 8 chr13 19468013 19468145 -100276753 + FLAM_A SINE Alu 1 132 -1 216 97 0 0 chr13 19469090 19469121 -100275777 + (T)n Simple_repeat Simple_repeat 1 31 0 1946 100 12 0 chr13 19469137 19469388 -100275510 + AluSx SINE Alu 1 254 -58 1998 78 27 0 chr13 19469388 19469644 -100275254 + AluSx SINE Alu 49 312 0 611 101 11 11 chr13 19469678 19469767 -100275131 - AluJ/FLAM SINE Alu -222 90 2 791 264 204 10 chr13 19469847 19470493 -100274405 + L2 LINE L2 2522 3312 -1 235 353 15 0 chr13 19470663 19470731 -100274167 + MER91A DNA MER1_type 13 81 -115 24 32 0 0 chr13 19470877 19470908 -100273990 + AT_rich Low_complexity Low_complexity 1 31 0 220 285 97 62 chr13 19470932 19470979 -100273919 + MIR SINE MIR 11 55 -207 2423 89 0 0 chr13 19470979 19471282 -100273616 - AluY SINE Alu -8 303 1 220 285 97 62 chr13 19471282 19471378 -100273520 + MIR SINE MIR 55 159 -103 2437 64 3 26 chr13 19471400 19471712 -100273186 - AluSc SINE Alu 0 309 5 1622 194 37 13 chr13 19471713 19472206 -100272692 + MER74A LTR ERVL 7 558 0 2189 149 0 0 chr13 19472467 19472775 -100272123 + AluSx SINE Alu 1 308 -4 633 254 53 5 chr13 19472832 19473021 -100271877 - L1M4 LINE L1 -863 5283 5086 783 121 0 3 chr13 19473029 19473260 -100271638 + AluSq SINE Alu 1 300 -13 2064 138 3 0 chr13 19473296 19473601 -100271297 + AluJb SINE Alu 1 306 -6 279 277 76 8 chr13 19473604 19473723 -100271175 + L1MB8 LINE L1 5255 5381 -2427 230 254 97 53 chr13 19473903 19474017 -100270881 - MIR SINE MIR -48 214 96 400 211 39 109 chr13 19474026 19474099 -100270799 - L2 LINE L2 -4 3309 3247 2569 53 0 0 chr13 19474099 19474403 -100270495 + AluY SINE Alu 1 304 -7 400 211 39 109 chr13 19474403 19474457 -100270441 - L2 LINE L2 -66 3247 3191 2109 130 0 13 chr13 19474977 19475292 -100269606 + AluSx SINE Alu 1 311 -1 23 0 0 0 chr13 19475292 19475315 -100269583 + AT_rich Low_complexity Low_complexity 1 23 0 306 245 187 32 chr13 19475319 19475474 -100269424 - HAL1 LINE L1 -4 2503 2325 849 236 81 28 chr13 19475577 19475880 -100269018 - L1MC4a LINE L1 -104 6017 5701 320 206 22 43 chr13 19475835 19475927 -100268971 + L1MB8 LINE L1 5902 5991 -187 * 29 47 0 0 chr13 19476098 19476141 -100268757 + AT_rich Low_complexity Low_complexity 1 43 0 1807 171 10 3 chr13 19476142 19476446 -100268452 + AluJo SINE Alu 1 306 -6 776 165 8 30 chr13 19477095 19477228 -100267670 + FLAM_C SINE Alu 1 130 -3 318 286 68 42 chr13 19478176 19478368 -100266530 - MIR3 SINE MIR -9 199 3 273 270 220 60 chr13 19478609 19478825 -100266073 - L2 LINE L2 -85 3228 2949 2374 94 0 0 chr13 19478825 19479133 -100265765 - AluSx SINE Alu -3 309 2 273 270 220 60 chr13 19479133 19479216 -100265682 - L2 LINE L2 -364 2949 2881 237 245 174 10 chr13 19479217 19479315 -100265583 + L1MC/D LINE L1 5694 5807 -2001 874 150 72 26 chr13 19479369 19479562 -100265336 + LTR54 LTR ERV1 309 510 0 2427 66 0 20 chr13 19479613 19479915 -100264983 + AluY SINE Alu 1 296 -15 24 0 0 0 chr13 19480275 19480299 -100264599 + AT_rich Low_complexity Low_complexity 1 24 0 16265 92 20 1 chr13 19481538 19482167 -100262731 - L1PA7 LINE L1 -5 6464 5848 2044 92 0 26 chr13 19482167 19482438 -100262460 - AluSg SINE Alu -44 266 3 16265 92 20 1 chr13 19482438 19484757 -100260141 - L1PA7 LINE L1 -621 5848 3448 12782 81 21 1 chr13 19484779 19486464 -100258434 - L1PA7 LINE L1 -4734 1727 8 417 301 75 40 chr13 19486540 19486739 -100258159 - MIR3 SINE MIR -1 207 2 327 238 62 0 chr13 19486935 19487015 -100257883 - L2 LINE L2 -5 3308 3224 2294 112 3 0 chr13 19487833 19488138 -100256760 + AluSx SINE Alu 1 306 -6 258 339 36 9 chr13 19488296 19488408 -100256490 + MIR SINE MIR 7 121 -141 22 35 0 0 chr13 19488599 19488628 -100256270 + AT_rich Low_complexity Low_complexity 1 29 0 2458 51 0 35 chr13 19489505 19489817 -100255081 - AluY SINE Alu -10 301 1 229 341 70 31 chr13 19490314 19490443 -100254455 - MIR SINE MIR -73 135 1 408 289 77 58 chr13 19490638 19490846 -100254052 - L3 LINE CR1 0 1577 1366 2311 92 3 13 chr13 19491067 19491373 -100253525 + AluSg SINE Alu 1 303 -7 264 385 49 72 chr13 19491586 19491934 -100252964 - L2 LINE L2 -15 3257 2918 348 252 134 39 chr13 19492159 19492286 -100252612 - L2 LINE L2 0 3313 3175 298 298 95 18 chr13 19492285 19492453 -100252445 + L2 LINE L2 3011 3191 -122 * 2267 115 3 0 chr13 19492573 19492885 -100252013 - AluSq SINE Alu 0 313 1 378 333 53 62 chr13 19493203 19493428 -100251470 - L2 LINE L2 0 3272 3050 482 255 53 55 chr13 19493534 19493812 -100251086 - MIR SINE MIR 0 262 25 1665 147 11 21 chr13 19493837 19494123 -100250775 - AluJb SINE Alu -29 283 1 1896 206 114 39 chr13 19494457 19495002 -100249896 + L1ME3A LINE L1 5583 6168 -2 454 271 119 96 chr13 19495083 19495150 -100249748 - MIR SINE MIR -1 261 197 2200 99 0 3 chr13 19495150 19495458 -100249440 + AluSp SINE Alu 1 307 0 454 271 119 96 chr13 19495458 19495640 -100249258 - MIR SINE MIR -65 197 5 431 244 9 26 chr13 19497166 19497281 -100247617 + MIR SINE MIR 148 260 -2 22 0 0 0 chr13 19497556 19497578 -100247320 + AT_rich Low_complexity Low_complexity 1 22 0 228 105 105 0 chr13 19497864 19497902 -100246996 + L2 LINE L2 2608 2649 -665 469 254 98 40 chr13 19498106 19498279 -100246619 - MIR SINE MIR -70 192 10 2137 129 10 3 chr13 19498540 19498843 -100246055 + AluSx SINE Alu 1 305 -7 26 50 0 0 chr13 19498843 19498883 -100246015 + AT_rich Low_complexity Low_complexity 1 40 0 191 316 18 0 chr13 19499230 19499287 -100245611 + MIR SINE MIR 203 260 -2 2374 74 0 7 chr13 19499574 19499871 -100245027 + AluY SINE Alu 1 295 -16 223 328 25 59 chr13 19501618 19501737 -100243161 + L2 LINE L2 2729 2843 -471 2367 96 0 6 chr13 19501740 19502054 -100242844 - AluSx SINE Alu 0 312 1 193 373 0 15 chr13 19502316 19502383 -100242515 + L2 LINE L2 3121 3186 -86 532 221 81 15 chr13 19502392 19502528 -100242370 - MIR SINE MIR -86 176 32 2244 115 0 3 chr13 19502698 19503002 -100241896 + AluSx SINE Alu 1 303 -9 185 161 0 0 chr13 19503023 19503054 -100241844 + L2 LINE L2 3028 3058 -255 2297 114 0 0 chr13 19503357 19503663 -100241235 - AluSg SINE Alu -2 308 3 2166 111 10 3 chr13 19503726 19504032 -100240866 + AluSg SINE Alu 3 310 0 251 257 57 133 chr13 19504302 19504512 -100240386 + MLT1L LTR MaLR 200 393 -222 3450 211 90 48 chr13 19504521 19506114 -100238784 - L1MDa LINE L1 -4642 1898 10 1579 222 99 60 chr13 19506116 19506262 -100238636 - L1ME LINE L1 -350 5816 5677 2184 113 17 14 chr13 19506262 19506616 -100238282 - THE1A LTR MaLR 0 355 1 1579 222 99 60 chr13 19506616 19507311 -100237587 - L1ME LINE L1 -489 5677 4988 1914 142 3 23 chr13 19507311 19507477 -100237421 - AluSx SINE Alu -12 300 141 2231 94 0 10 chr13 19507477 19507775 -100237123 - AluY SINE Alu -14 297 3 1914 142 3 23 chr13 19507775 19507910 -100236988 - AluSx SINE Alu -171 141 5 1579 222 99 60 chr13 19507910 19508266 -100236632 - L1ME LINE L1 -1178 4988 4647 677 189 0 0 chr13 19508275 19508386 -100236512 - FLAM_A SINE Alu -12 130 20 2337 75 0 0 chr13 19508481 19508761 -100236137 + AluY SINE Alu 1 280 -31 859 216 165 27 chr13 19508855 19509230 -100235668 - L1ME LINE L1 -1540 4606 4180 282 73 0 0 chr13 19509233 19509274 -100235624 + (TG)n Simple_repeat Simple_repeat 1 41 0 348 287 25 16 chr13 19509294 19509416 -100235482 - L1MC4a LINE L1 -1210 6598 6476 1228 291 68 13 chr13 19509884 19510388 -100234510 - L1MC4a LINE L1 -361 5803 5317 1640 204 71 22 chr13 19510505 19510955 -100233943 + L1MC4 LINE L1 6821 7292 -750 445 300 123 0 chr13 19510964 19511134 -100233764 - LTR16A LTR ERVL -5 445 255 1953 199 146 39 chr13 19511311 19511455 -100233443 + L1MC4 LINE L1 7299 7426 -616 13661 118 24 74 chr13 19511455 19512841 -100232057 + Tigger1 DNA MER2_type 2 1206 -1212 2431 71 0 0 chr13 19512841 19513135 -100231763 - AluY SINE Alu -16 295 2 13661 118 24 74 chr13 19513135 19514291 -100230607 + Tigger1 DNA MER2_type 1206 2418 0 1953 199 146 39 chr13 19514291 19514363 -100230535 + L1MC4 LINE L1 7426 7489 -553 1687 152 0 70 chr13 19514363 19514694 -100230204 + AluJo SINE Alu 1 310 0 1953 199 146 39 chr13 19514694 19514932 -100229966 + L1MC4 LINE L1 7489 7700 -342 2218 123 0 0 chr13 19514932 19515242 -100229656 + AluSx SINE Alu 3 312 0 1953 199 146 39 chr13 19515242 19515456 -100229442 + L1MC4 LINE L1 7700 8042 0 2173 110 3 7 chr13 19515476 19515775 -100229123 + AluSx SINE Alu 4 301 -11 180 0 0 0 chr13 19515775 19515795 -100229103 + (TG)n Simple_repeat Simple_repeat 2 21 0 420 294 79 68 chr13 19515963 19516052 -100228846 - L1MC4a LINE L1 -1313 4833 4746 524 133 36 0 chr13 19516052 19516135 -100228763 - L1MC1 LINE L1 -9 6324 6239 420 294 79 68 chr13 19516135 19516523 -100228375 - L1MC4a LINE L1 -1400 4746 4364 2297 68 3 56 chr13 19516523 19516847 -100228051 - AluY SINE Alu -4 307 1 420 294 79 68 chr13 19516847 19517339 -100227559 - L1MC4a LINE L1 -1782 4364 3852 2329 107 0 0 chr13 19517618 19517918 -100226980 + AluSx SINE Alu 1 300 -12 205 311 98 30 chr13 19518763 19518895 -100226003 + MIR SINE MIR 120 260 -2 1994 121 25 0 chr13 19519026 19519308 -100225590 + AluSx SINE Alu 1 289 -23 211 247 26 26 chr13 19519904 19519919 -100224979 + (TA)n Simple_repeat Simple_repeat 1 15 -62 1818 167 0 3 chr13 19519919 19520206 -100224692 + AluJo SINE Alu 1 286 -26 211 247 26 26 chr13 19520206 19520267 -100224631 + (TA)n Simple_repeat Simple_repeat 14 77 0 24 0 0 0 chr13 19520357 19520381 -100224517 + AT_rich Low_complexity Low_complexity 1 24 0 270 367 83 35 chr13 19520389 19520618 -100224280 + MIR SINE MIR 9 248 -14 1089 235 202 19 chr13 19520829 19521426 -100223472 - L2 LINE L2 0 3313 2620 244 175 35 0 chr13 19521440 19521497 -100223401 - L1ME4a LINE L1 -81 6040 5982 26 0 0 0 chr13 19521715 19521741 -100223157 + AT_rich Low_complexity Low_complexity 1 26 0 547 318 49 26 chr13 19522023 19522290 -100222608 - L2 LINE L2 -453 2861 2589 216 0 0 0 chr13 19522425 19522449 -100222449 + (TCTCCC)n Simple_repeat Simple_repeat 2 25 0 1115 143 20 5 chr13 19523062 19523258 -100221640 + L1MB2 LINE L1 5944 6142 -29 1955 114 15 0 chr13 19523258 19523530 -100221368 - AluY SINE Alu -35 276 1 309 169 84 28 chr13 19523530 19523601 -100221297 + LTR40a LTR ERVL 22 96 -423 1012 98 147 18 chr13 19523602 19523765 -100221133 + AluSg SINE Alu 17 200 -110 1502 229 43 24 chr13 19523782 19524158 -100220740 + LTR40a LTR ERVL 137 519 0 1867 127 53 13 chr13 19524239 19524539 -100220359 - AluSx SINE Alu 0 312 1 413 325 128 42 chr13 19524744 19525061 -100219837 - L1M4 LINE L1 -1067 5079 4733 2266 83 0 0 chr13 19525089 19525366 -100219532 - AluY SINE Alu -18 293 17 352 287 56 84 chr13 19525437 19525831 -100219067 + MLT1I LTR MaLR 19 401 -8 318 308 89 14 chr13 19525838 19526052 -100218846 - L1M4 LINE L1 -1559 4587 4358 333 263 19 58 chr13 19526091 19526247 -100218651 - HAL1b LINE L1 -12 1336 1187 359 340 30 11 chr13 19526269 19526534 -100218364 - L1M4 LINE L1 -1797 4349 4080 589 168 117 51 chr13 19528552 19528749 -100216149 - MER63A DNA MER1_type 0 210 1 239 234 0 39 chr13 19529060 19529137 -100215761 + A-rich Low_complexity Low_complexity 2 75 0 253 288 166 31 chr13 19529609 19529772 -100215126 + MIR SINE MIR 56 240 -22 1779 142 38 10 chr13 19529848 19530136 -100214762 - AluJb SINE Alu -16 296 1 201 330 96 52 chr13 19530373 19530718 -100214180 + L2 LINE L2 1351 1710 -1604 2167 98 7 3 chr13 19531427 19531722 -100213176 - AluSg SINE Alu -14 296 1 334 140 35 0 chr13 19531750 19531807 -100213091 - Alu SINE Alu 0 302 244 2378 86 3 0 chr13 19531943 19532245 -100212653 - AluY SINE Alu -8 303 1 249 351 36 40 chr13 19532453 19532675 -100212223 + L2 LINE L2 2844 3064 -208 272 250 60 0 chr13 19533053 19533137 -100211761 - MIR SINE MIR -74 188 100 712 200 145 0 chr13 19533158 19533303 -100211595 + MER58B DNA MER1_type 176 341 0 644 206 201 32 chr13 19533303 19533522 -100211376 + MLT1H LTR MaLR 274 529 -20 30 59 0 0 chr13 19533924 19533975 -100210923 + AT_rich Low_complexity Low_complexity 1 51 0 3338 186 123 29 chr13 19535303 19536267 -100208631 - L1MD1 LINE L1 -11 6231 5129 2136 67 0 7 chr13 19536267 19536536 -100208362 - AluY SINE Alu -10 301 35 3338 186 123 29 chr13 19536536 19536794 -100208104 - L1MD1 LINE L1 -1113 5129 4897 1351 228 27 54 chr13 19536810 19537218 -100207680 - L1MD1 LINE L1 -1755 4391 3995 2323 87 7 13 chr13 19537277 19537586 -100207312 + AluSx SINE Alu 1 307 -5 358 294 30 96 chr13 19537600 19537797 -100207101 + L1MC4a LINE L1 5868 6051 -1757 723 153 59 9 chr13 19537886 19538057 -100206841 - Tigger3(Golem) DNA MER2_type -34 2995 1 2251 68 7 31 chr13 19538359 19538653 -100206245 - AluY SINE Alu -16 295 9 2510 54 0 3 chr13 19538907 19539203 -100205695 - AluY SINE Alu -16 295 1 324 277 39 52 chr13 19539789 19539944 -100204954 - L1MC5 LINE L1 -35 7926 7774 1690 208 82 46 chr13 19540006 19540605 -100204293 - L1ME2 LINE L1 -137 6027 5373 2024 94 0 14 chr13 19541315 19541591 -100203307 + AluSx SINE Alu 1 272 -40 285 146 0 0 chr13 19541592 19541640 -100203258 + (CA)n Simple_repeat Simple_repeat 2 49 0 2079 97 66 3 chr13 19542887 19543175 -100201723 - AluSp SINE Alu -3 310 5 275 335 97 39 chr13 19543214 19543596 -100201302 + L2 LINE L2 1981 2384 -930 1986 198 148 22 chr13 19543669 19544258 -100200640 - L1ME2 LINE L1 -17 6145 5507 1857 185 26 0 chr13 19545532 19545602 -100199296 - L1MD3 LINE L1 -17 7978 7911 1572 138 116 8 chr13 19545602 19545870 -100199028 - AluJb SINE Alu -15 297 1 1857 185 26 0 chr13 19545870 19546150 -100198748 - L1MD3 LINE L1 -84 7911 7619 257 265 0 15 chr13 19546247 19546315 -100198583 - MIR3 SINE MIR -24 184 118 1957 156 195 55 chr13 19546685 19547141 -100197757 + MLT2B1 LTR ERVL 1 520 0 352 226 45 60 chr13 19547483 19547616 -100197282 + MLT1K LTR MaLR 141 271 -317 898 213 80 82 chr13 19548008 19548422 -100196476 - L1MC5 LINE L1 -36 7925 7513 4064 164 76 40 chr13 19548427 19549003 -100195895 - L1MB3 LINE L1 -2 6181 5549 2692 45 3 0 chr13 19549003 19549312 -100195586 - AluY SINE Alu -1 310 1 4064 164 76 40 chr13 19549312 19549735 -100195163 - L1MB3 LINE L1 -634 5549 5143 342 0 0 0 chr13 19549735 19549773 -100195125 + (TTTA)n Simple_repeat Simple_repeat 2 39 0 1583 164 0 64 chr13 19549777 19550075 -100194823 - AluJb SINE Alu -33 279 1 979 214 40 40 chr13 19550079 19550355 -100194543 - L1MC5 LINE L1 -436 7525 7250 335 191 0 0 chr13 19551650 19551713 -100193185 - U13 snRNA snRNA -28 76 14 369 332 44 93 chr13 19552426 19552836 -100192062 - L2 LINE L2 -1 3271 2882 469 323 112 50 chr13 19552946 19553448 -100191450 - L2 LINE L2 -746 2568 2036 219 204 102 0 chr13 19553530 19553579 -100191319 - MIR SINE MIR -82 180 127 180 0 0 0 chr13 19554479 19554499 -100190399 + (TAAAAA)n Simple_repeat Simple_repeat 2 21 0 465 296 192 34 chr13 19556417 19556975 -100187923 - L2 LINE L2 -1226 2088 1443 2466 61 0 0 chr13 19557146 19557442 -100187456 - AluY SINE Alu -13 298 3 795 98 71 0 chr13 19557803 19557915 -100186983 + AluSg/x SINE Alu 177 296 -16 1701 187 10 13 chr13 19558018 19558328 -100186570 - AluJo SINE Alu -3 309 1 281 212 214 3 chr13 19559526 19559608 -100185290 - MIR SINE MIR -93 115 18 * 445 308 123 22 chr13 19559606 19559833 -100185065 - MIR SINE MIR -10 252 3 1597 163 41 37 chr13 19560160 19560454 -100184444 - AluJo SINE Alu -17 295 1 197 402 10 0 chr13 19560714 19560816 -100184082 + L2 LINE L2 772 874 -2440 2329 85 0 31 chr13 19561278 19561596 -100183302 - AluSq SINE Alu 0 313 6 1383 160 122 34 chr13 19562058 19562109 -100182789 - MER2 DNA MER2_type -25 320 275 1638 174 31 7 chr13 19562109 19562402 -100182496 + AluJo SINE Alu 1 300 -12 1383 160 122 34 chr13 19562402 19562644 -100182254 - MER2 DNA MER2_type -70 275 1 404 306 100 31 chr13 19562646 19562937 -100181961 + L2 LINE L2 1884 2194 -1120 1283 81 17 17 chr13 19563247 19563419 -100181479 - AluY SINE Alu -139 172 1 309 26 0 0 chr13 19565524 19565562 -100179336 + (TCTCCC)n Simple_repeat Simple_repeat 1 38 0 6221 63 39 48 chr13 19565562 19567477 -100177421 + SVA Other Other 57 1385 -1 968 243 148 29 chr13 19567492 19567871 -100177027 - MLT1H LTR MaLR -53 496 73 2093 106 46 0 chr13 19567889 19568171 -100176727 - AluSx SINE Alu -15 297 3 535 260 264 21 chr13 19568204 19568492 -100176406 - L2 LINE L2 -691 2623 2266 1921 149 17 14 chr13 19568999 19569295 -100175603 - AluJo SINE Alu -15 297 1 443 122 28 84 chr13 19569867 19569949 -100174949 + L1MB7 LINE L1 5824 5900 -284 2169 121 0 13 chr13 19569949 19570255 -100174643 + AluSq SINE Alu 1 302 -11 443 122 28 84 chr13 19570255 19570279 -100174619 + L1MB7 LINE L1 5900 5924 -260 337 82 41 0 chr13 19570311 19570360 -100174538 - U6 snRNA snRNA -50 57 7 899 250 49 0 chr13 19570361 19570625 -100174273 + L1MB7 LINE L1 5908 6184 0 * 2683 192 88 104 chr13 19570613 19571978 -100172920 + L1MEc LINE L1 1619 3005 -3210 621 189 18 9 chr13 19571978 19572089 -100172809 + AluSg/x SINE Alu 187 298 -11 1266 203 117 4 chr13 19572092 19572288 -100172610 - AluJo SINE Alu -6 296 61 2156 133 0 0 chr13 19572288 19572597 -100172301 + AluSx SINE Alu 4 312 0 1266 203 117 4 chr13 19572597 19572666 -100172232 - AluJo SINE Alu -241 61 1 2683 192 88 104 chr13 19572666 19572940 -100171958 + L1MEc LINE L1 3007 3296 -2919 2357 64 3 0 chr13 19573143 19573460 -100171438 - AluY SINE Alu 0 318 1 239 313 62 12 chr13 19573467 19573547 -100171351 + MIR3 SINE MIR 110 193 -15 360 0 0 0 chr13 19573875 19573915 -100170983 + (TG)n Simple_repeat Simple_repeat 2 41 0 527 257 0 0 chr13 19574149 19574254 -100170644 + MIR SINE MIR 6 110 -152 2227 96 0 14 chr13 19574365 19574658 -100170240 + AluSq SINE Alu 1 289 -24 22 0 0 0 chr13 19577252 19577274 -100167624 + GC_rich Low_complexity Low_complexity 1 22 0 266 280 17 0 chr13 19577572 19577690 -100167208 + C-rich Low_complexity Low_complexity 1 120 0 1523 148 13 45 chr13 19578439 19578749 -100166149 - AluJb SINE Alu -12 300 1 553 198 54 9 chr13 19579192 19579303 -100165595 - MLT1C LTR MaLR -3 464 349 1703 115 23 4 chr13 19579309 19579569 -100165329 + MSTB LTR MaLR 2 266 -160 1018 142 32 0 chr13 19579793 19579948 -100164950 + MSTB LTR MaLR 267 426 0 622 221 13 27 chr13 19579953 19580202 -100164696 - MLT1C LTR MaLR -122 345 68 1912 149 3 3 chr13 19580202 19580503 -100164395 - AluSx SINE Alu -11 301 1 1391 99 0 5 chr13 19580716 19580907 -100163991 - AluSc SINE Alu -1 308 119 571 355 5 5 chr13 19581204 19581407 -100163491 - L2 LINE L2 -559 2755 2553 1859 123 10 47 chr13 19581419 19581720 -100163178 + AluSg SINE Alu 1 290 -20 2379 97 0 0 chr13 19582423 19582733 -100162165 + AluSg SINE Alu 1 310 0 2069 107 42 3 chr13 19582975 19583264 -100161634 + AluSx SINE Alu 1 300 -12 298 230 239 0 chr13 19583293 19583406 -100161492 + MER34 LTR ERV1 1 140 -402 * 1040 222 198 16 chr13 19583374 19583743 -100161155 + MER39 LTR ERV1 272 707 0 3409 144 26 42 chr13 19584512 19585137 -100159761 + MER49 LTR ERV1 9 623 -300 253 146 24 0 chr13 19585138 19585179 -100159719 + 5S rRNA rRNA 1 42 -79 * 1184 254 17 17 chr13 19585178 19585477 -100159421 + MER49 LTR ERV1 611 909 -14 1143 105 23 6 chr13 19585487 19585659 -100159239 - L1MA3 LINE L1 -1 6304 6130 1199 111 17 22 chr13 19585659 19585828 -100159070 - AluSg/x SINE Alu -22 290 121 574 148 0 0 chr13 19585828 19585909 -100158989 - AluJ/FRAM SINE Alu -11 301 221 6158 199 41 32 chr13 19585909 19586306 -100158592 - L1 LINE L1 -1761 5804 5412 1870 174 0 7 chr13 19586306 19586610 -100158288 - AluJb SINE Alu -10 302 1 6158 199 41 32 chr13 19586610 19586822 -100158076 - L1 LINE L1 -2153 5412 5204 2095 114 14 0 chr13 19586822 19587112 -100157786 - AluSq SINE Alu -19 294 1 6158 199 41 32 chr13 19587112 19588012 -100156886 - L1 LINE L1 -2361 5204 4314 2255 91 11 0 chr13 19588012 19588297 -100156601 - AluSp SINE Alu -24 289 2 6158 199 41 32 chr13 19588297 19588521 -100156377 - L1 LINE L1 -3251 4314 4094 2123 134 3 3 chr13 19588521 19588827 -100156071 - AluJb SINE Alu -6 306 1 6158 199 41 32 chr13 19588827 19589394 -100155504 - L1 LINE L1 -3471 4094 3438 857 140 13 7 chr13 19589411 19589561 -100155337 + L1M1 LINE L1 3009 3159 -4406 1133 84 0 39 chr13 19589565 19589720 -100155178 - AluY SINE Alu -162 149 1 16271 122 32 5 chr13 19589720 19592101 -100152797 - L1 LINE L1 -4611 2954 510 1057 139 47 142 chr13 19592124 19592398 -100152500 - L1MD3 LINE L1 -346 7649 7402 445 136 18 146 chr13 19592404 19592472 -100152426 - MLT1F1 LTR MaLR -449 118 68 2103 131 3 0 chr13 19592472 19592769 -100152129 + AluSx SINE Alu 1 298 -14 445 136 18 146 chr13 19592769 19592810 -100152088 - MLT1F1 LTR MaLR -499 68 23 586 195 8 25 chr13 19592811 19592929 -100151969 - L1MD3 LINE L1 -707 7288 7173 2406 67 3 0 chr13 19593105 19593402 -100151496 - AluY SINE Alu -13 298 1 335 307 79 8 chr13 19593874 19594001 -100150897 + L2 LINE L2 3178 3313 0 617 267 45 11 chr13 19594238 19594414 -100150484 + MIR SINE MIR 5 186 -76 243 0 0 0 chr13 19594429 19594456 -100150442 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 1766 121 25 32 chr13 19594460 19594740 -100150158 - AluSx SINE Alu -33 279 2 303 282 23 8 chr13 19594749 19594880 -100150018 + (TA)n Simple_repeat Simple_repeat 2 134 0 23 0 0 0 chr13 19594980 19595003 -100149895 + AT_rich Low_complexity Low_complexity 1 23 0 207 151 38 0 chr13 19595269 19595322 -100149576 + A-rich Low_complexity Low_complexity 3 57 0 698 211 121 16 chr13 19595329 19595585 -100149313 - LTR50 LTR ERVL -506 289 7 370 238 76 9 chr13 19595589 19595744 -100149154 - L1MC/D LINE L1 -344 5818 5668 207 280 20 0 chr13 19595919 19595969 -100148929 + L2 LINE L2 3208 3258 -14 2435 70 0 10 chr13 19596261 19596563 -100148335 + AluSg SINE Alu 1 299 -11 1617 141 72 10 chr13 19596574 19596864 -100148034 + AluJo SINE Alu 1 308 -4 2243 112 3 0 chr13 19596864 19597168 -100147730 + AluSx SINE Alu 1 305 -7 487 131 30 0 chr13 19597180 19597279 -100147619 + GA-rich Low_complexity Low_complexity 2 103 0 1865 136 27 30 chr13 19598292 19598593 -100146305 + AluSx SINE Alu 1 300 -12 2394 63 0 31 chr13 19598783 19599102 -100145796 + AluY SINE Alu 1 309 -2 285 322 58 0 chr13 19599890 19599977 -100144921 - L2 LINE L2 -8 3305 3214 809 128 0 0 chr13 19599977 19600086 -100144812 + FLAM_A SINE Alu 22 130 -12 377 269 0 62 chr13 19600086 19600231 -100144667 - L2 LINE L2 -94 3219 3084 203 307 31 47 chr13 19600586 19600713 -100144185 + MIR3 SINE MIR 15 139 -69 711 176 65 41 chr13 19600825 19600995 -100143903 - MLT1B LTR MaLR -213 177 4 756 211 109 28 chr13 19601402 19601687 -100143211 + L1ME4a LINE L1 5536 5843 -278 225 187 9 75 chr13 19601687 19601794 -100143104 + (TA)n Simple_repeat Simple_repeat 1 100 0 386 292 99 9 chr13 19602449 19602715 -100142183 - L2 LINE L2 -264 3049 2768 321 180 0 0 chr13 19602756 19602817 -100142081 - L1MCa LINE L1 -4195 2231 2171 1042 147 23 45 chr13 19602859 19603036 -100141862 - AluJo SINE Alu -32 280 108 333 140 18 0 chr13 19603037 19603094 -100141804 - L1MCa LINE L1 -4241 2185 2128 441 192 23 0 chr13 19603105 19603235 -100141663 + CT-rich Low_complexity Low_complexity 2 134 0 2217 117 7 7 chr13 19603239 19603547 -100141351 - AluSx SINE Alu -2 310 3 2281 105 3 13 chr13 19603559 19603872 -100141026 - AluSp SINE Alu -3 310 1 388 192 0 14 chr13 19603872 19603945 -100140953 - L1MCa LINE L1 -6093 333 262 * 714 180 109 52 chr13 19603944 19604068 -100140830 - L1M4 LINE L1 -3016 3366 3250 2187 95 14 14 chr13 19604068 19604362 -100140536 + AluSq SINE Alu 1 294 -19 714 180 109 52 chr13 19604362 19604504 -100140394 - L1M4 LINE L1 -3132 3250 3085 4792 222 121 44 chr13 19604512 19604851 -100140047 - L1M4 LINE L1 -4547 1837 1526 2368 83 3 0 chr13 19604851 19605152 -100139746 - AluY SINE Alu -9 302 1 4792 222 121 44 chr13 19605152 19606508 -100138390 - L1M4 LINE L1 -4858 1526 11 1950 125 36 0 chr13 19606512 19606793 -100138105 - AluSq SINE Alu -22 291 1 2136 126 0 16 chr13 19607071 19607381 -100137517 - AluSx SINE Alu -7 305 1 195 298 76 15 chr13 19607420 19607551 -100137347 - L2 LINE L2 -4 3309 3171 309 337 153 12 chr13 19607706 19607955 -100136943 - L2 LINE L2 -344 2970 2687 495 287 57 62 chr13 19608023 19608232 -100136666 - MIR SINE MIR -51 211 4 373 278 137 50 chr13 19608232 19608595 -100136303 - L2 LINE L2 -660 2654 2260 21 82 0 0 chr13 19609077 19609126 -100135772 + AT_rich Low_complexity Low_complexity 1 49 0 251 301 96 0 chr13 19609156 19609229 -100135669 + L2 LINE L2 3155 3234 -38 180 111 0 0 chr13 19609277 19609304 -100135594 + (TCCC)n Simple_repeat Simple_repeat 4 30 0 259 316 61 10 chr13 19609307 19609405 -100135493 - L2 LINE L2 -1 3271 3169 209 300 7 79 chr13 19609467 19609482 -100135416 - L2 LINE L2 -274 2998 2983 2515 65 0 7 chr13 19609482 19609790 -100135108 + AluY SINE Alu 1 306 -5 209 300 7 79 chr13 19609790 19609914 -100134984 - L2 LINE L2 -289 2983 2869 1219 210 98 0 chr13 19610361 19610637 -100134261 - L1MC4 LINE L1 -919 7123 6821 836 173 0 14 chr13 19612940 19613079 -100131819 - FLAM_C SINE Alu -6 137 1 453 138 0 69 chr13 19613101 19613188 -100131710 - AluJ/FRAM SINE Alu -7 305 225 2194 96 7 0 chr13 19613802 19614083 -100130815 - AluSg SINE Alu -27 283 1 901 198 25 1 chr13 19614561 19614756 -100130142 + MLT1A2 LTR MaLR 190 390 0 284 250 148 56 chr13 19614798 19614906 -100129992 + MIR SINE MIR 6 123 -139 303 284 80 11 chr13 19614920 19615008 -100129890 - MIR SINE MIR -150 112 19 2263 86 0 22 chr13 19615026 19615340 -100129558 + AluY SINE Alu 4 310 -1 1804 149 41 7 chr13 19615342 19615637 -100129261 + AluSx SINE Alu 1 305 -7 1748 172 10 3 chr13 19615676 19615979 -100128919 + AluJo SINE Alu 1 305 -7 1688 168 24 20 chr13 19616006 19616303 -100128595 - AluJo SINE Alu -14 298 1 22 0 0 0 chr13 19616440 19616462 -100128436 + AT_rich Low_complexity Low_complexity 1 22 0 2426 94 7 0 chr13 19616618 19616926 -100127972 - AluSx SINE Alu -2 310 1 489 227 41 104 chr13 19617084 19617219 -100127679 - L1MC/D LINE L1 -2234 5551 5434 1971 119 4 0 chr13 19617219 19617497 -100127401 - AluSx SINE Alu -33 279 1 489 227 41 104 chr13 19617497 19617632 -100127266 - L1MC/D LINE L1 -2351 5434 5292 379 160 40 110 chr13 19617632 19617660 -100127238 + LTR40a LTR ERVL 4 32 -487 2291 98 0 3 chr13 19617660 19617957 -100126941 - AluY SINE Alu -15 296 1 379 160 40 110 chr13 19617957 19618028 -100126870 + LTR40a LTR ERVL 32 96 -423 1022 98 147 18 chr13 19618029 19618192 -100126706 + AluSg SINE Alu 17 200 -110 1392 245 43 24 chr13 19618209 19618585 -100126313 + LTR40a LTR ERVL 137 519 0 1811 133 54 14 chr13 19618666 19618960 -100125938 - AluSx SINE Alu -6 306 1 406 320 97 30 chr13 19619091 19619422 -100125476 - L1MC/D LINE L1 -977 5169 4817 2305 79 0 0 chr13 19619510 19619787 -100125111 - AluY SINE Alu -18 293 17 357 284 58 86 chr13 19619858 19620252 -100124646 + MLT1I LTR MaLR 19 401 -8 358 263 19 58 chr13 19620512 19620668 -100124230 - HAL1b LINE L1 -12 1336 1187 376 331 83 14 chr13 19620676 19620966 -100123932 - L1MC/D LINE L1 -1779 4367 4058 180 218 73 18 chr13 19621882 19621937 -100122961 - MIR SINE MIR -106 156 99 4969 168 43 12 chr13 19623489 19624471 -100120427 + L1 LINE L1 3995 5006 -1140 5973 125 55 55 chr13 19624598 19625174 -100119724 + L1MA5A LINE L1 4903 5477 -820 1791 176 7 0 chr13 19625174 19625463 -100119435 - AluJo SINE Alu -21 291 1 5973 125 55 55 chr13 19625463 19625911 -100118987 + L1MA5A LINE L1 5477 5943 -354 2097 87 35 7 chr13 19625911 19626197 -100118701 + AluSq SINE Alu 1 294 -19 5973 125 55 55 chr13 19626197 19626551 -100118347 + L1MA5A LINE L1 5943 6295 -2 1263 262 18 12 chr13 19627311 19627647 -100117251 - L1M4 LINE L1 -1800 4346 4009 471 209 209 12 chr13 19627656 19627828 -100117070 - MLT1G1 LTR MaLR -389 206 1 289 347 21 11 chr13 19627992 19628087 -100116811 + L2 LINE L2 3142 3237 -35 272 200 40 0 chr13 19628194 19628244 -100116654 - L2 LINE L2 -38 3234 3183 2236 123 0 0 chr13 19629187 19629487 -100115411 - AluSx SINE Alu -12 300 1 557 282 84 73 chr13 19629766 19630258 -100114640 + L1MC4a LINE L1 3852 4337 -1809 2289 71 3 56 chr13 19630258 19630582 -100114316 + AluY SINE Alu 1 307 -4 557 282 84 73 chr13 19630582 19630970 -100113928 + L1MC4a LINE L1 4337 4746 -1400 563 133 36 0 chr13 19630970 19631053 -100113845 + L1MC1 LINE L1 6239 6324 -9 557 282 84 73 chr13 19631053 19631142 -100113756 + L1MC4a LINE L1 4746 4833 -1313 180 0 0 0 chr13 19631310 19631330 -100113568 + (CA)n Simple_repeat Simple_repeat 2 21 0 2241 110 3 0 chr13 19631330 19631630 -100113268 - AluSq SINE Alu -11 302 2 393 241 97 14 chr13 19632206 19632351 -100112547 - L1MC4 LINE L1 -1065 6977 6821 1271 286 102 42 chr13 19632450 19632972 -100111926 + L1MC4a LINE L1 5301 5822 -342 353 287 25 16 chr13 19633440 19633562 -100111336 + L1MC4a LINE L1 6476 6598 -1210 282 73 0 0 chr13 19633582 19633623 -100111275 + (CA)n Simple_repeat Simple_repeat 1 41 0 945 216 165 27 chr13 19633626 19634001 -100110897 + L1M4 LINE L1 4180 4606 -1540 2351 75 0 0 chr13 19634095 19634375 -100110523 - AluY SINE Alu -31 280 1 725 189 0 0 chr13 19634470 19634581 -100110317 + FLAM_A SINE Alu 20 130 -12 1279 234 40 20 chr13 19634590 19634941 -100109957 + L1M4 LINE L1 4647 5004 -1142 959 124 0 0 chr13 19634946 19635075 -100109823 + AluSq/x SINE Alu 5 133 -180 2240 93 3 7 chr13 19635081 19635383 -100109515 + AluY SINE Alu 3 303 -8 344 140 35 0 chr13 19635519 19635576 -100109322 + Alu SINE Alu 242 300 0 2184 98 7 3 chr13 19635604 19635899 -100108999 + AluSg SINE Alu 1 296 -14 217 330 96 52 chr13 19636608 19636953 -100107945 - L2 LINE L2 -1604 1710 1351 1777 142 38 10 chr13 19637190 19637478 -100107420 + AluJb SINE Alu 1 296 -16 244 288 166 31 chr13 19637554 19637717 -100107181 - MIR SINE MIR -22 240 56 1869 182 118 58 chr13 19638287 19638804 -100106094 + LTR10A LTR ERV1 1 548 -61 2577 136 12 24 chr13 19638817 19639300 -100105598 + L1PBa LINE L1 2279 2706 -4156 1994 97 76 7 chr13 19639363 19639652 -100105246 + AluSc SINE Alu 1 309 0 19952 111 15 12 chr13 19639652 19643345 -100101553 + L1PBa LINE L1 2703 6406 -441 333 171 37 0 chr13 19643442 19643524 -100101374 + L1MB7 LINE L1 5824 5908 -276 1594 117 4 17 chr13 19643524 19643755 -100101143 + AluSx SINE Alu 1 228 -84 10276 30 9 4 chr13 19643855 19645419 -100099479 - L1P2 LINE L1 -501 5654 4086 * 16471 34 8 1 chr13 19645400 19647523 -100097375 + L1P2 LINE L1 1934 4072 -2074 2694 255 149 9 chr13 19647523 19648443 -100096455 + L2 LINE L2 1202 2250 -1064 1692 186 24 34 chr13 19649792 19650201 -100094697 - L1M4b LINE L1 -5311 1548 1144 2427 281 103 20 chr13 19650243 19651140 -100093758 - L1M4b LINE L1 -5869 990 20 629 281 113 31 chr13 19651159 19651435 -100093463 - L1ME3 LINE L1 -334 6108 5856 2215 129 0 0 chr13 19651435 19651744 -100093154 - AluSx SINE Alu -3 309 1 629 281 113 31 chr13 19651744 19652186 -100092712 - L1ME3 LINE L1 -586 5856 5337 653 280 55 10 chr13 19652211 19652518 -100092380 - L1ME3 LINE L1 -1198 5228 4908 198 0 0 0 chr13 19652521 19652543 -100092355 + (CA)n Simple_repeat Simple_repeat 2 23 0 1911 249 53 28 chr13 19652904 19653588 -100091310 - L1ME3 LINE L1 -3212 3214 2514 5247 41 2 2 chr13 19653609 19654247 -100090651 - L1PA3 LINE L1 0 6155 5518 2309 173 127 33 chr13 19654267 19655072 -100089826 - L1ME3 LINE L1 -3993 2433 1390 2509 68 0 0 chr13 19655072 19655367 -100089531 + AluY SINE Alu 1 295 -16 2309 173 127 33 chr13 19655367 19655708 -100089190 - L1ME3 LINE L1 -5036 1390 1083 880 157 57 0 chr13 19655712 19655871 -100089027 - FRAM SINE Alu -13 163 1 2177 108 7 0 chr13 19656096 19656226 -100088672 + AluSx SINE Alu 1 129 -183 2198 104 0 7 chr13 19656226 19656534 -100088364 + AluSg SINE Alu 1 306 -4 2177 108 7 0 chr13 19656534 19656699 -100088199 + AluSx SINE Alu 129 298 -14 24 0 0 0 chr13 19657610 19657634 -100087264 + AT_rich Low_complexity Low_complexity 1 24 0 998 263 173 28 chr13 19657912 19658341 -100086557 - L2 LINE L2 -2 3311 2821 327 282 29 33 chr13 19658567 19658748 -100086150 - MIR SINE MIR -14 248 3 22 0 0 0 chr13 19660506 19660528 -100084370 + AT_rich Low_complexity Low_complexity 1 22 0 417 367 69 12 chr13 19660537 19660782 -100084116 - MIR SINE MIR -1 261 3 288 104 21 21 chr13 19661549 19661597 -100083301 - MIR3 SINE MIR -12 196 149 205 156 0 0 chr13 19661839 19661871 -100083027 + CT-rich Low_complexity Low_complexity 1 32 0 340 186 0 0 chr13 19662180 19662239 -100082659 + AluJo SINE Alu 78 136 -166 2296 89 0 3 chr13 19662263 19662565 -100082333 + AluY SINE Alu 1 301 -10 237 338 0 25 chr13 19662574 19662654 -100082244 - L2 LINE L2 -236 3036 2959 1678 134 100 1 chr13 19663035 19663623 -100081275 - LTR34 LTR ERV1 0 699 1 2400 70 3 0 chr13 19664120 19664419 -100080479 - AluY SINE Alu -11 300 1 21 0 0 0 chr13 19664576 19664597 -100080301 + AT_rich Low_complexity Low_complexity 1 21 0 2062 133 0 22 chr13 19666287 19666603 -100078295 + AluJb SINE Alu 1 309 -3 234 307 130 102 chr13 19668173 19668219 -100076679 + L2 LINE L2 2972 3015 -257 1513 164 18 94 chr13 19668219 19668372 -100076526 + AluJo SINE Alu 1 104 -208 2290 93 10 7 chr13 19668372 19668673 -100076225 + AluSg SINE Alu 1 302 -8 1513 164 18 94 chr13 19668673 19668868 -100076030 + AluJo SINE Alu 104 312 0 234 307 130 102 chr13 19668868 19669114 -100075784 + L2 LINE L2 3015 3272 0 1628 183 7 39 chr13 19669151 19669457 -100075441 + AluJb SINE Alu 1 296 -16 2304 101 0 3 chr13 19670191 19670489 -100074409 - AluSq SINE Alu -16 297 1 22 0 0 0 chr13 19670623 19670645 -100074253 + AT_rich Low_complexity Low_complexity 1 22 0 1721 103 0 0 chr13 19672040 19672254 -100072644 - AluSx SINE Alu -87 225 12 1608 160 106 47 chr13 19673421 19673828 -100071070 + LTR10A LTR ERV1 118 548 -61 718 204 91 17 chr13 19673947 19674123 -100070775 + AluJo SINE Alu 123 311 -1 2373 78 0 0 chr13 19674954 19675250 -100069648 + AluY SINE Alu 1 296 -15 301 295 0 0 chr13 19677175 19677253 -100067645 + L2 LINE L2 1480 1557 -1757 1518 224 3 13 chr13 19677253 19677556 -100067342 - AluJb SINE Alu -11 301 2 439 201 187 0 chr13 19677990 19678129 -100066769 + L1MC4 LINE L1 6945 7109 -933 774 218 73 28 chr13 19678140 19678388 -100066510 + L1MC4 LINE L1 7276 7534 -508 219 358 49 0 chr13 19678560 19678641 -100066257 - L2 LINE L2 0 3272 3188 7250 123 12 6 chr13 19678868 19680332 -100064566 + Harlequin LTR ERV1 3209 6623 -26 1679 191 104 52 chr13 19680360 19680879 -100064019 + LTR10A LTR ERV1 1 546 -63 260 169 46 0 chr13 19680893 19680958 -100063940 + L1P LINE L1 1594 1661 -4485 2346 104 0 0 chr13 19681573 19681872 -100063026 + AluSx SINE Alu 2 300 -12 1818 135 96 16 chr13 19682017 19682329 -100062569 + MER1B DNA MER1_type 1 337 0 252 218 0 36 chr13 19682808 19682863 -100062035 + L2 LINE L2 2588 2640 -674 947 175 67 127 chr13 19682909 19683280 -100061618 - Charlie4a DNA MER1_type -159 349 1 429 318 168 51 chr13 19683417 19683732 -100061166 + L2 LINE L2 2920 3271 -1 25 0 0 0 chr13 19683860 19683885 -100061013 + AT_rich Low_complexity Low_complexity 1 25 0 2353 56 0 0 chr13 19683949 19684234 -100060664 - AluY SINE Alu -26 285 1 2059 101 14 17 chr13 19684962 19685258 -100059640 + AluSg SINE Alu 1 295 -15 2505 49 3 0 chr13 19685379 19685686 -100059212 + AluY SINE Alu 1 308 -3 1821 60 80 90 chr13 19686108 19686409 -100058489 - AluSq SINE Alu -14 299 2 309 253 178 41 chr13 19687075 19687221 -100057677 + L1M2 LINE L1 1068 1233 -5616 431 250 64 57 chr13 19688374 19688514 -100056384 + MIR SINE MIR 25 167 -41 394 282 114 13 chr13 19688522 19688671 -100056227 + MIR SINE MIR 93 256 -6 346 289 132 0 chr13 19689115 19689236 -100055662 + L2 LINE L2 3136 3272 0 181 302 19 0 chr13 19691120 19691173 -100053725 + MIR SINE MIR 100 153 -55 188 330 44 11 chr13 19691240 19691331 -100053567 - L2 LINE L2 -6 3307 3214 786 237 113 34 chr13 19691374 19691788 -100053110 - Charlie7 DNA MER1_type -40 2572 2126 377 186 156 106 chr13 19691805 19691979 -100052919 - L1MC5 LINE L1 -48 7913 7726 2020 150 0 0 chr13 19691979 19692001 -100052897 - AluSx SINE Alu -5 307 286 201 74 0 0 chr13 19692001 19692028 -100052870 + (TG)n Simple_repeat Simple_repeat 2 28 0 2020 150 0 0 chr13 19692028 19692312 -100052586 - AluSx SINE Alu -25 287 1 377 186 156 106 chr13 19692312 19692336 -100052562 - L1MC5 LINE L1 -235 7726 7705 364 265 95 86 chr13 19693920 19694118 -100050780 - L1M2 LINE L1 -5579 1270 1066 3334 107 236 7 chr13 19694118 19694678 -100050220 + LTR12 LTR ERV1 1 688 0 364 265 95 86 chr13 19694678 19694815 -100050083 - L1M2 LINE L1 -5783 1066 932 228 306 35 0 chr13 19694917 19695002 -100049896 - Charlie7 DNA MER1_type -1073 1539 1452 969 177 0 111 chr13 19695010 19695253 -100049645 - MER20 DNA MER1_type -3 216 1 459 290 0 8 chr13 19695255 19695379 -100049519 + L2 LINE L2 3191 3313 0 1313 230 178 58 chr13 19695482 19695857 -100049041 - Charlie7 DNA MER1_type -1789 823 494 2301 102 3 3 chr13 19695857 19696160 -100048738 + AluSq SINE Alu 1 303 -10 1313 230 178 58 chr13 19696160 19696394 -100048504 - Charlie7 DNA MER1_type -2118 494 290 2221 119 13 0 chr13 19696394 19696697 -100048201 - AluSq SINE Alu -6 307 1 1313 230 178 58 chr13 19696697 19696710 -100048188 - Charlie7 DNA MER1_type -2322 290 280 219 25 75 0 chr13 19696710 19696750 -100048148 + (TA)n Simple_repeat Simple_repeat 2 44 0 1313 230 178 58 chr13 19696750 19696856 -100048042 - Charlie7 DNA MER1_type -2332 280 5 600 216 54 54 chr13 19696910 19697132 -100047766 + MLT1J2 LTR MaLR 1 222 -228 358 105 0 79 chr13 19697230 19697306 -100047592 + MLT1J2 LTR MaLR 381 450 0 2161 119 0 7 chr13 19697804 19698114 -100046784 - AluSq SINE Alu -5 308 1 6721 74 5 1 chr13 19700181 19701258 -100043640 + L1PA8A LINE L1 5025 6104 -27 546 245 77 0 chr13 19701443 19701586 -100043312 + LTR41 LTR ERVL 1 154 -619 382 242 55 24 chr13 19702119 19702284 -100042614 + LTR41 LTR ERVL 599 768 -5 2215 121 0 0 chr13 19702694 19702991 -100041907 - AluSx SINE Alu -15 297 1 21 0 0 0 chr13 19703210 19703231 -100041667 + AT_rich Low_complexity Low_complexity 1 21 0 25 31 0 0 chr13 19703353 19703385 -100041513 + AT_rich Low_complexity Low_complexity 1 32 0 388 220 88 0 chr13 19703482 19703573 -100041325 - L2 LINE L2 0 3313 3215 257 264 23 35 chr13 19703771 19703858 -100041040 - L2 LINE L2 -1 3271 3186 2404 52 0 14 chr13 19703913 19704244 -100040654 + AluY SINE Alu 1 327 0 421 336 29 14 chr13 19704660 19704800 -100040098 + L3 LINE CR1 1395 1536 -41 2233 88 0 17 chr13 19705000 19705294 -100039604 - AluSc SINE Alu -20 289 1 601 196 113 0 chr13 19705449 19705582 -100039316 + MSTB2 LTR MaLR 263 410 -47 2499 62 0 10 chr13 19705748 19706055 -100038843 - AluY SINE Alu -7 304 1 886 105 0 16 chr13 19706190 19706314 -100038584 - FLAM_C SINE Alu -11 132 11 23 33 0 0 chr13 19706339 19706369 -100038529 + AT_rich Low_complexity Low_complexity 1 30 0 386 254 135 24 chr13 19707191 19707317 -100037581 - L1M4b LINE L1 -6700 159 20 863 281 150 23 chr13 19707336 19707612 -100037286 - L1ME3 LINE L1 -334 6246 6006 2277 117 0 0 chr13 19707612 19707920 -100036978 - AluSx SINE Alu -4 308 1 863 281 150 23 chr13 19707920 19708716 -100036182 - L1ME3 LINE L1 -574 6006 5046 198 0 0 0 chr13 19708719 19708741 -100036157 + (CA)n Simple_repeat Simple_repeat 2 23 0 2222 242 54 29 chr13 19709090 19709788 -100035110 - L1ME3 LINE L1 -3197 3367 2652 4057 40 8 8 chr13 19709807 19710285 -100034613 - L1PA4 LINE L1 -1 6154 5677 4953 56 27 21 chr13 19710636 19711266 -100033632 - L1PA5 LINE L1 -3 6151 5518 2679 174 139 36 chr13 19711286 19712092 -100032806 - L1ME3 LINE L1 -3993 2571 1566 2530 68 0 0 chr13 19712092 19712388 -100032510 + AluY SINE Alu 1 296 -15 2679 174 139 36 chr13 19712388 19712475 -100032423 - L1ME3 LINE L1 -4998 1566 1489 1191 221 108 18 chr13 19712702 19713037 -100031861 - L1ME3 LINE L1 -4983 1581 1217 1054 151 44 0 chr13 19713037 19713196 -100031702 - FRAM SINE Alu -16 160 1 3285 215 94 46 chr13 19713226 19714288 -100030610 - L1ME3 LINE L1 -4851 1194 82 989 108 0 0 chr13 19714469 19714599 -100030299 + AluSq/x SINE Alu 1 130 -183 2197 63 39 7 chr13 19714599 19714884 -100030014 + AluSq SINE Alu 1 294 -19 2301 131 8 6 chr13 19714886 19715238 -100029660 + L1MA5A LINE L1 5943 6295 -2 234 91 0 0 chr13 19716341 19716374 -100028524 + (A)n Simple_repeat Simple_repeat 1 33 0 230 285 258 43 chr13 19716624 19716880 -100028018 + L3b LINE CR1 1257 1567 -16 23 33 0 0 chr13 19717026 19717056 -100027842 + AT_rich Low_complexity Low_complexity 1 30 0 362 254 76 42 chr13 19717365 19717483 -100027415 - MER5A DNA MER1_type -51 138 17 1200 186 5 9 chr13 19718093 19718303 -100026595 - MER3 DNA MER1_type 0 209 1 1524 134 169 12 chr13 19718571 19718825 -100026073 + AluJb SINE Alu 1 294 -8 257 170 0 38 chr13 19719222 19719275 -100025623 - L2 LINE L2 0 3313 3263 940 208 73 38 chr13 19719523 19719840 -100025058 - MLT1C LTR MaLR 0 467 140 1330 149 38 4 chr13 19719840 19720126 -100024772 + L1PA16 LINE L1 5858 6162 -1 625 180 25 87 chr13 19720152 19720313 -100024585 - MLT1C LTR MaLR -316 151 1 319 259 99 71 chr13 19721086 19721298 -100023600 - L2 LINE L2 -2 3311 3094 221 290 167 41 chr13 19721605 19721850 -100023048 - L2 LINE L2 -674 2640 2365 2016 124 0 7 chr13 19721918 19722208 -100022690 - AluSx SINE Alu -24 288 1 2346 70 0 3 chr13 19722395 19722722 -100022176 + AluY SINE Alu 1 326 0 435 329 29 14 chr13 19723138 19723278 -100021620 + L3 LINE CR1 1395 1536 -41 2218 92 0 17 chr13 19723478 19723772 -100021126 - AluSc SINE Alu -20 289 1 601 196 113 0 chr13 19723927 19724060 -100020838 + MSTB2 LTR MaLR 263 410 -47 2499 62 0 10 chr13 19724226 19724533 -100020365 - AluY SINE Alu -7 304 1 886 105 0 16 chr13 19724668 19724792 -100020106 - FLAM_C SINE Alu -11 132 11 23 33 0 0 chr13 19724817 19724847 -100020051 + AT_rich Low_complexity Low_complexity 1 30 0 2281 107 0 7 chr13 19725678 19725988 -100018910 - AluSx SINE Alu 0 312 5 2531 63 0 0 chr13 19726418 19726721 -100018177 - AluY SINE Alu -8 303 1 2384 45 21 7 chr13 19726925 19727214 -100017684 - AluY SINE Alu -18 293 1 228 285 168 0 chr13 19727707 19727844 -100017054 - HAL1 LINE L1 -2319 188 29 1016 197 16 0 chr13 19728574 19728757 -100016141 + MER5A DNA MER1_type 3 188 -1 434 266 129 60 chr13 19728786 19729451 -100015447 - L1MEd LINE L1 -2964 3165 2455 333 345 114 8 chr13 19729461 19729707 -100015191 - L1MEd LINE L1 -3969 2341 2070 1707 184 74 18 chr13 19729843 19730169 -100014729 + MER2 DNA MER2_type 1 344 0 786 255 82 85 chr13 19730396 19731446 -100013452 - L1MEd LINE L1 -4480 1649 609 288 339 114 40 chr13 19731657 19732035 -100012863 - MLT1J2 LTR MaLR -44 406 1 263 253 27 13 chr13 19732070 19732145 -100012753 - L1MEd LINE L1 -6031 88 13 192 250 0 0 chr13 19732152 19732192 -100012706 - MER5B DNA MER1_type -135 43 4 2353 70 3 35 chr13 19732417 19732730 -100012168 + AluY SINE Alu 1 303 -8 32 43 0 0 chr13 19733383 19733429 -100011469 + AT_rich Low_complexity Low_complexity 1 46 0 2412 84 0 0 chr13 19733553 19733849 -100011049 - AluSq SINE Alu -17 296 1 2044 93 0 15 chr13 19734344 19734612 -100010286 - AluSx SINE Alu -43 269 6 295 273 201 26 chr13 19734769 19734923 -100009975 - MIR3 SINE MIR -7 201 21 287 307 30 20 chr13 19735846 19735947 -100008951 - MIR SINE MIR -119 143 42 439 233 92 0 chr13 19736000 19736120 -100008778 + LTR33A LTR ERVL 61 191 -332 313 196 345 0 chr13 19736178 19736326 -100008572 + LTR33A LTR ERVL 318 516 -7 275 308 68 30 chr13 19736624 19736757 -100008141 - MER5B DNA MER1_type -40 138 1 778 199 58 0 chr13 19736765 19736936 -100007962 + MER5A DNA MER1_type 1 181 -8 281 321 60 22 chr13 19737157 19737291 -100007607 - L2 LINE L2 0 3313 3175 295 268 70 108 chr13 19740044 19740201 -100004697 + MER96 DNA MER1_type? 25 175 0 225 0 0 0 chr13 19740366 19740391 -100004507 + (TG)n Simple_repeat Simple_repeat 2 26 0 2089 147 0 6 chr13 19740402 19740716 -100004182 - AluSx SINE Alu 0 312 1 209 325 13 0 chr13 19742892 19742969 -100001929 - L2 LINE L2 -11 3302 3225 291 325 124 20 chr13 19743012 19743261 -100001637 + L3b LINE CR1 1123 1397 -186 1871 214 116 9 chr13 19743363 19743822 -100001076 - MLT2B2 LTR ERVL -7 508 1 2250 115 0 3 chr13 19743827 19744123 -100000775 - AluSx SINE Alu -17 295 1 268 330 41 0 chr13 19744694 19744791 -100000107 + L2 LINE L2 3159 3259 -13 289 326 46 17 chr13 19745000 19745175 -99999723 + L1MC/D LINE L1 5694 5873 -1935 203 254 34 0 chr13 19745395 19745454 -99999444 + (TA)n Simple_repeat Simple_repeat 2 62 0 203 239 0 34 chr13 19745508 19745596 -99999302 + (TAAA)n Simple_repeat Simple_repeat 2 86 0 285 275 225 14 chr13 19745991 19746133 -99998765 + MER5B DNA MER1_type 6 177 -1 224 293 11 98 chr13 19746220 19746394 -99998504 + MER5A DNA MER1_type 1 159 -30 2522 63 48 40 chr13 19746798 19747177 -99997721 - L1PA5 LINE L1 -3 6151 5770 187 405 32 16 chr13 19748089 19748215 -99996683 + L3 LINE CR1 3 130 -1447 557 154 8 85 chr13 19748378 19748508 -99996390 + MLT2B1 LTR ERVL 399 518 -2 2550 61 0 0 chr13 19748801 19749098 -99995800 + AluY SINE Alu 1 297 -14 833 96 0 4 chr13 19749361 19749572 -99995326 - AluY SINE Alu -8 303 2 279 59 0 0 chr13 19749687 19749721 -99995177 - MLT2C2 LTR ERVL -335 129 96 762 211 96 46 chr13 19749745 19749963 -99994935 + MLT2C1 LTR ERVL 121 349 -48 189 213 0 0 chr13 19749985 19750032 -99994866 + C-rich Low_complexity Low_complexity 1 47 0 357 117 0 0 chr13 19750314 19750374 -99994524 + (TA)n Simple_repeat Simple_repeat 1 60 0 204 232 21 11 chr13 19750467 19750562 -99994336 + (TA)n Simple_repeat Simple_repeat 2 97 0 248 296 88 25 chr13 19750603 19750762 -99994136 - L1ME4a LINE L1 -71 6050 5882 2028 97 0 0 chr13 19750871 19751138 -99993760 + AluSq SINE Alu 44 310 -3 312 320 16 0 chr13 19751147 19751272 -99993626 - MIR SINE MIR -15 247 121 2576 55 0 3 chr13 19751381 19751689 -99993209 - AluY SINE Alu -4 307 1 2452 45 3 7 chr13 19753166 19753458 -99991440 + AluY SINE Alu 1 291 -20 1152 276 100 51 chr13 19754493 19755550 -99989348 + L1MCc LINE L1 1168 2484 -4638 2510 127 11 3 chr13 19755932 19756293 -99988605 - THE1B LTR MaLR 0 364 1 372 349 60 5 chr13 19756812 19757027 -99987871 + L2 LINE L2 2745 2971 -343 521 172 0 11 chr13 19757037 19757130 -99987768 - Tigger7 DNA MER2_type -6 2581 2490 * 1538 183 4 8 chr13 19757127 19757390 -99987508 - Tigger7 DNA MER2_type -2224 263 2 418 271 205 5 chr13 19757408 19757618 -99987280 + L2 LINE L2 2989 3240 -73 336 330 154 0 chr13 19757675 19758001 -99986897 - L2 LINE L2 -150 3163 2794 838 294 144 17 chr13 19758072 19758718 -99986180 - L2 LINE L2 -671 2643 1916 478 288 94 21 chr13 19758953 19759186 -99985712 + MIR SINE MIR 13 262 0 1487 289 29 25 chr13 19759938 19760551 -99984347 - L1MC4a LINE L1 -1883 5925 5310 761 118 17 0 chr13 19760522 19760641 -99984257 - L1MCa LINE L1 -4801 1625 1505 * 1383 174 190 45 chr13 19760641 19761015 -99983883 - MSTB2 LTR MaLR -7 450 23 5841 240 133 13 chr13 19761028 19762576 -99982322 - MSTD-int LTR MaLR 0 1735 2 1295 234 46 38 chr13 19762578 19762971 -99981927 - MSTD LTR MaLR 0 396 1 4615 201 34 100 chr13 19763006 19764572 -99980326 - L1MCa LINE L1 -4938 1488 26 180 125 0 0 chr13 19764647 19764679 -99980219 + (CA)n Simple_repeat Simple_repeat 1 32 0 1771 143 4 8 chr13 19764689 19764948 -99979950 - AluJo SINE Alu -49 263 6 2161 79 61 0 chr13 19764955 19765233 -99979665 - AluY SINE Alu -16 295 1 399 309 82 30 chr13 19765368 19765990 -99978908 - L1MC4a LINE L1 -1006 5420 4767 2225 100 3 7 chr13 19766028 19766346 -99978552 + AluSx SINE Alu 1 312 0 937 121 0 0 chr13 19766369 19766501 -99978397 + FLAM_C SINE Alu 1 132 -1 206 111 56 0 chr13 19766568 19766604 -99978294 + CT-rich Low_complexity Low_complexity 3 40 0 617 268 42 0 chr13 19766828 19767018 -99977880 + MIR SINE MIR 60 257 -5 378 0 0 0 chr13 19769312 19769354 -99975544 + (TG)n Simple_repeat Simple_repeat 2 43 0 22 35 0 0 chr13 19769355 19769384 -99975514 + GC_rich Low_complexity Low_complexity 1 29 0 24 53 0 0 chr13 19769446 19769484 -99975414 + GC_rich Low_complexity Low_complexity 1 38 0 231 36 0 0 chr13 19769987 19770015 -99974883 + (TG)n Simple_repeat Simple_repeat 1 28 0 189 132 0 0 chr13 19771742 19771780 -99973118 + (TC)n Simple_repeat Simple_repeat 2 39 0 23 0 0 0 chr13 19773296 19773319 -99971579 + GC_rich Low_complexity Low_complexity 1 23 0 24 77 0 0 chr13 19773953 19774005 -99970893 + GC_rich Low_complexity Low_complexity 1 52 0 206 220 17 0 chr13 19776736 19776795 -99968103 + CT-rich Low_complexity Low_complexity 1 60 0 309 317 7 113 chr13 19777322 19777606 -99967292 + L2 LINE L2 3014 3267 -5 365 237 31 0 chr13 19777823 19777920 -99966978 + MIR SINE MIR 93 192 -70 2322 69 0 60 chr13 19779102 19779421 -99965477 + AluY SINE Alu 4 303 -8 345 137 0 0 chr13 19779917 19779968 -99964930 - MLT1A2 LTR MaLR -56 318 268 203 171 158 53 chr13 19781158 19781234 -99963664 - L2 LINE L2 -12 3301 3218 256 257 9 106 chr13 19781250 19781363 -99963535 + L2 LINE L2 3171 3272 0 1649 148 18 25 chr13 19781443 19781720 -99963178 - AluJo SINE Alu -2 310 36 210 171 0 0 chr13 19781912 19781947 -99962951 + (TA)n Simple_repeat Simple_repeat 2 36 0 323 158 53 53 chr13 19782269 19782345 -99962553 - Charlie7 DNA MER1_type 0 2612 2537 23 0 0 0 chr13 19782380 19782403 -99962495 + AT_rich Low_complexity Low_complexity 1 23 0 182 255 59 0 chr13 19783237 19783288 -99961610 - L3b LINE CR1 -50 1533 1480 186 314 14 0 chr13 19784123 19784193 -99960705 + MIR3 SINE MIR 116 186 -22 1669 135 108 0 chr13 19785511 19785771 -99959127 - AluSx SINE Alu -24 288 1 252 262 58 29 chr13 19786320 19786423 -99958475 - MIR SINE MIR -80 128 23 182 333 71 0 chr13 19787931 19788030 -99956868 - MIR SINE MIR -112 150 45 300 294 64 18 chr13 19788755 19788864 -99956034 + L2 LINE L2 3159 3272 0 260 356 7 0 chr13 19789610 19789759 -99955139 + (CA)n Simple_repeat Simple_repeat 1 150 0 * 339 301 28 17 chr13 19789733 19789909 -99954989 + (CTCA)n Simple_repeat Simple_repeat 3 180 0 2689 215 107 5 chr13 19790012 19790603 -99954295 - MER82 DNA MER2_type -2 651 1 182 211 35 0 chr13 19791682 19791739 -99953159 + CT-rich Low_complexity Low_complexity 2 60 0 224 316 118 21 chr13 19791908 19792095 -99952803 + MIR SINE MIR 23 227 -35 403 268 28 16 chr13 19793498 19793623 -99951275 - MIR3 SINE MIR -8 200 71 444 37 0 0 chr13 19794505 19794559 -99950339 + (TG)n Simple_repeat Simple_repeat 1 54 0 1735 164 40 3 chr13 19796590 19796889 -99948009 - AluJb SINE Alu -2 310 1 2575 30 0 7 chr13 19797251 19797550 -99947348 - AluY SINE Alu -14 297 1 215 351 26 18 chr13 19797694 19797808 -99947090 + MIR3 SINE MIR 88 202 -6 287 333 48 24 chr13 19797867 19798035 -99946863 - MIR SINE MIR -70 192 21 306 0 0 0 chr13 19799458 19799492 -99945406 + (TG)n Simple_repeat Simple_repeat 2 35 0 442 261 72 67 chr13 19799784 19799964 -99944934 + MER5A DNA MER1_type 8 188 -1 1302 64 0 0 chr13 19800461 19800617 -99944281 - L1PA10 LINE L1 -4 6164 6009 390 42 0 0 chr13 19801143 19801191 -99943707 + (TG)n Simple_repeat Simple_repeat 2 49 0 202 0 59 29 chr13 19801428 19801462 -99943436 + (TAAAAA)n Simple_repeat Simple_repeat 2 36 0 35 41 0 0 chr13 19801497 19801546 -99943352 + AT_rich Low_complexity Low_complexity 1 49 0 35 0 0 0 chr13 19804950 19804985 -99939913 + AT_rich Low_complexity Low_complexity 1 35 0 2373 80 0 13 chr13 19804986 19805288 -99939610 + AluY SINE Alu 1 298 -13 207 0 0 0 chr13 19806460 19806483 -99938415 + (TTTAA)n Simple_repeat Simple_repeat 3 25 0 1662 195 0 3 chr13 19806483 19806765 -99938133 - AluSx SINE Alu -27 285 5 276 236 90 11 chr13 19806904 19806993 -99937905 - L2 LINE L2 -1 3312 3217 207 0 0 0 chr13 19808640 19808663 -99936235 + (CAA)n Simple_repeat Simple_repeat 2 24 0 4038 244 74 68 chr13 19809450 19809897 -99935001 + L1ME1 LINE L1 422 865 -5531 2691 118 66 20 chr13 19809897 19810304 -99934594 - MSTB LTR MaLR 0 426 1 4038 244 74 68 chr13 19810304 19810965 -99933933 + L1ME1 LINE L1 865 1520 -4876 1772 68 0 5 chr13 19810965 19811186 -99933712 - AluY SINE Alu -6 305 86 4038 244 74 68 chr13 19811186 19811355 -99933543 + L1ME1 LINE L1 1520 1686 -4710 2429 75 0 0 chr13 19811355 19811647 -99933251 + AluY SINE Alu 1 292 -19 4038 244 74 68 chr13 19811647 19812033 -99932865 + L1ME1 LINE L1 1686 2098 -4298 2466 230 31 8 chr13 19812036 19812672 -99932226 + L1ME1 LINE L1 2179 2829 -3386 1919 50 0 0 chr13 19812658 19812897 -99932001 - L1P LINE L1 -848 5298 5060 * 2758 75 0 0 chr13 19812897 19813230 -99931668 + L1PA5 LINE L1 5820 6154 0 642 247 110 0 chr13 19813230 19813457 -99931441 + L1ME1 LINE L1 2806 3057 -3158 229 211 19 0 chr13 19813451 19813503 -99931395 + L1ME1 LINE L1 3762 3814 -2401 * 2190 123 3 0 chr13 19813533 19813835 -99931063 + AluSx SINE Alu 5 307 -5 2550 231 58 33 chr13 19813835 19814614 -99930284 + L1ME1 LINE L1 4053 4850 -1365 * 3066 208 86 28 chr13 19814605 19815505 -99929393 + L1ME1 LINE L1 5293 6399 -4 33 0 0 0 chr13 19816538 19816571 -99928327 + AT_rich Low_complexity Low_complexity 1 33 0 22 35 0 0 chr13 19816730 19816759 -99928139 + AT_rich Low_complexity Low_complexity 1 29 0 660 287 121 18 chr13 19816882 19817105 -99927793 + MIR SINE MIR 13 258 -4 1529 119 80 88 chr13 19817980 19818260 -99926638 + L1MA8 LINE L1 5943 6221 -70 2282 113 0 0 chr13 19818260 19818562 -99926336 - AluSx SINE Alu -10 302 1 1529 119 80 88 chr13 19818562 19818633 -99926265 + L1MA8 LINE L1 6221 6291 0 472 320 75 23 chr13 19819715 19820021 -99924877 + L2 LINE L2 2253 2574 -740 892 225 67 0 chr13 19820131 19820340 -99924558 - MER46C DNA MER2_type -24 314 92 3351 149 9 11 chr13 19821830 19822399 -99922499 - L1MA9 LINE L1 0 6312 5745 338 385 8 0 chr13 19822678 19822800 -99922098 - L2 LINE L2 -9 3263 3141 2369 95 0 7 chr13 19822882 19823187 -99921711 + AluSq SINE Alu 1 303 -10 183 42 0 0 chr13 19823266 19823290 -99921608 + (CAAAC)n Simple_repeat Simple_repeat 2 25 0 387 393 22 11 chr13 19823484 19823756 -99921142 - L3 LINE CR1 -366 1211 937 348 259 152 25 chr13 19823974 19824171 -99920727 - MIR SINE MIR -21 241 20 1199 119 0 6 chr13 19825297 19825621 -99919277 + (CCA)n Simple_repeat Simple_repeat 1 503 0 579 269 12 29 chr13 19825622 19825793 -99919105 - MIR SINE MIR -9 253 86 30 0 0 0 chr13 19827379 19827409 -99917489 + AT_rich Low_complexity Low_complexity 1 30 0 507 209 29 64 chr13 19827714 19827886 -99917012 - MER104 DNA Tc2 0 180 15 206 224 20 0 chr13 19827952 19828001 -99916897 + (CCCTAA)n Simple_repeat Simple_repeat 4 53 0 229 405 41 15 chr13 19828001 19828268 -99916630 + L2 LINE L2 2463 2736 -578 1484 162 62 4 chr13 19828396 19828655 -99916243 - AluJo SINE Alu -38 274 1 1326 166 28 5 chr13 19829030 19829247 -99915651 + MER58A DNA MER1_type 1 222 -2 192 158 0 0 chr13 19830708 19830746 -99914152 + GA-rich Low_complexity Low_complexity 6 43 0 858 286 81 25 chr13 19830979 19831159 -99913739 - MLT1J LTR MaLR 0 511 343 2483 199 88 27 chr13 19831159 19831681 -99913217 + MLT2B3 LTR ERVL 1 554 0 858 286 81 25 chr13 19831681 19831955 -99912943 - MLT1J LTR MaLR -168 343 6 478 166 101 157 chr13 19832578 19832795 -99912103 + MER102b DNA MER1_type 137 341 0 354 348 90 32 chr13 19832798 19833198 -99911700 - L2 LINE L2 -1039 2275 1853 367 287 22 37 chr13 19833419 19833555 -99911343 - MIR SINE MIR -70 192 59 189 210 113 0 chr13 19834003 19834065 -99910833 + L2 LINE L2 3245 3313 0 711 299 0 15 chr13 19834179 19834383 -99910515 - MIR SINE MIR 0 262 62 2321 91 0 3 chr13 19834684 19834982 -99909916 - AluSx SINE Alu -15 297 1 328 271 133 13 chr13 19836492 19836643 -99908255 + MER5A DNA MER1_type 21 189 0 229 275 116 0 chr13 19836852 19836921 -99907977 - MIR SINE MIR -75 187 111 2225 111 10 0 chr13 19837043 19837341 -99907557 - AluSq SINE Alu -12 301 1 345 242 0 0 chr13 19837639 19837705 -99907193 + MER63 DNA MER1_type 682 747 -314 594 237 200 0 chr13 19840165 19840355 -99904543 - MIR SINE MIR -3 259 32 1867 211 40 11 chr13 19840837 19841283 -99903615 + MLT1C LTR MaLR 1 459 -8 260 262 262 0 chr13 19841292 19841395 -99903503 - MER5A DNA MER1_type -39 150 21 346 339 127 27 chr13 19841959 19842251 -99902647 + L2 LINE L2 2944 3264 -8 1222 49 0 27 chr13 19842799 19842983 -99901915 + (TCCA)n Simple_repeat Simple_repeat 1 179 0 1092 289 50 56 chr13 19842983 19843660 -99901238 + L2 LINE L2 2655 3313 0 219 296 57 0 chr13 19843818 19843906 -99900992 - L2 LINE L2 0 3272 3180 375 347 95 46 chr13 19844321 19845119 -99899779 + L2 LINE L2 2220 3058 -214 2121 249 64 40 chr13 19845243 19846226 -99898672 - L1MEc LINE L1 -4494 1784 817 243 0 0 0 chr13 19846228 19846255 -99898643 + (TA)n Simple_repeat Simple_repeat 2 28 0 2612 147 12 7 chr13 19846255 19846678 -99898220 - L1MB2 LINE L1 -62 6109 5685 2070 260 92 54 chr13 19846679 19847441 -99897457 - L1MEc LINE L1 -5571 825 35 1770 155 17 28 chr13 19848169 19848460 -99896438 - AluJo SINE Alu -24 288 1 373 317 81 8 chr13 19848607 19848730 -99896168 + MIR3 SINE MIR 3 134 -74 570 274 88 34 chr13 19848756 19848960 -99895938 - MIR SINE MIR 0 262 48 669 230 131 80 chr13 19849147 19849634 -99895264 - L1MEd LINE L1 -4927 1192 681 1244 145 114 86 chr13 19849994 19850284 -99894614 - AluJb SINE Alu -14 298 1 498 283 66 0 chr13 19850292 19850458 -99894440 - L1MEd LINE L1 -5939 180 4 326 314 97 0 chr13 19850459 19850583 -99894315 - MIR SINE MIR -61 201 66 27 39 0 19 chr13 19851432 19851449 -99893449 + AT_rich Low_complexity Low_complexity 1 17 -34 1542 110 103 8 chr13 19851449 19851712 -99893186 + L1MA3 LINE L1 6018 6305 0 27 39 0 19 chr13 19851712 19851746 -99893152 + AT_rich Low_complexity Low_complexity 17 51 0 23 33 0 0 chr13 19852315 19852345 -99892553 + AT_rich Low_complexity Low_complexity 1 30 0 758 266 31 5 chr13 19852345 19852537 -99892361 - MIR SINE MIR -51 211 15 283 250 145 57 chr13 19854125 19854249 -99890649 + MIR3 SINE MIR 21 155 -53 5518 148 21 8 chr13 19854639 19855530 -99889368 + MER4D LTR ERV1 1 903 0 2504 183 63 51 chr13 19856009 19856534 -99888364 + LTR26B LTR ERV1 1 531 0 183 42 0 0 chr13 19856766 19856790 -99888108 + (GGCTG)n Simple_repeat Simple_repeat 4 27 0 219 227 0 0 chr13 19857286 19857330 -99887568 + GA-rich Low_complexity Low_complexity 2 45 0 1845 161 63 9 chr13 19858356 19858766 -99886132 - MER31A LTR ERV1 -19 447 14 337 310 155 41 chr13 19860374 19861106 -99883792 + L2 LINE L2 2234 3052 -220 258 268 45 18 chr13 19861161 19861273 -99883625 + MER65B LTR ERV1 1 115 -416 500 210 10 0 chr13 19861724 19861824 -99883074 + L2 LINE L2 3172 3272 0 192 200 0 78 chr13 19862771 19862834 -99882064 + L2 LINE L2 3207 3303 -10 2115 55 82 34 chr13 19863063 19863238 -99881660 - AluYa5 SINE Alu -4 307 111 2562 50 7 0 chr13 19863238 19863541 -99881357 - AluY SINE Alu -6 305 1 2115 55 82 34 chr13 19863541 19863658 -99881240 - AluYa5 SINE Alu -200 111 1 22 0 0 0 chr13 19864641 19864663 -99880235 + AT_rich Low_complexity Low_complexity 1 22 0 3489 211 91 82 chr13 19864709 19865964 -99878934 + L1MC4 LINE L1 6759 8028 -14 1839 207 39 0 chr13 19865964 19866298 -99878600 - MER7A DNA MER2_type -1 345 1 3489 211 91 82 chr13 19866298 19866314 -99878584 + L1MC4 LINE L1 8028 8042 0 526 236 32 74 chr13 19868250 19868466 -99876432 - HAL1 LINE L1 -1 2506 2300 897 211 17 28 chr13 19868661 19868841 -99876057 - MER45A DNA AcHobo 0 178 1 1421 286 136 32 chr13 19868994 19869871 -99875027 - HAL1 LINE L1 -343 2164 1197 307 155 32 0 chr13 19869877 19869952 -99874946 - Alu SINE Alu -3 299 239 329 305 168 31 chr13 19869984 19870178 -99874720 - HAL1 LINE L1 -1364 1143 977 216 97 0 0 chr13 19870178 19870209 -99874689 + (TTTA)n Simple_repeat Simple_repeat 2 32 0 329 305 168 31 chr13 19870209 19870437 -99874461 - HAL1 LINE L1 -1530 977 663 193 234 0 0 chr13 19871868 19871915 -99872983 - MIR SINE MIR -111 151 105 2568 50 0 0 chr13 19872077 19872379 -99872519 + AluY SINE Alu 1 302 -9 322 401 28 19 chr13 19872486 19872698 -99872200 + L2 LINE L2 3032 3245 -27 2141 129 16 0 chr13 19872767 19873070 -99871828 - AluSx SINE Alu -4 308 1 2124 143 9 109 chr13 19874411 19874596 -99870302 + MLT2C1 LTR ERVL 1 118 -279 1501 172 16 67 chr13 19874596 19874910 -99869988 - AluJo SINE Alu -14 298 1 2124 143 9 109 chr13 19874910 19875165 -99869733 + MLT2C1 LTR ERVL 118 397 0 2359 69 3 0 chr13 19875776 19876064 -99868834 - AluSc SINE Alu -20 289 1 370 282 48 0 chr13 19876829 19876932 -99867966 + MIR SINE MIR 46 153 -109 2268 117 0 3 chr13 19877767 19878075 -99866823 + AluSx SINE Alu 5 311 -1 499 159 24 127 chr13 19878157 19878283 -99866615 + Tigger1 DNA MER2_type 6 118 -2300 255 31 0 0 chr13 19878283 19878315 -99866583 + (TTTA)n Simple_repeat Simple_repeat 1 32 0 1615 64 0 15 chr13 19878315 19878518 -99866380 - AluY SINE Alu -111 200 1 1097 71 0 0 chr13 19878529 19878670 -99866228 - AluY SINE Alu -1 310 170 15227 122 19 9 chr13 19878670 19880966 -99863932 + Tigger1 DNA MER2_type 101 2418 0 350 94 0 0 chr13 19881373 19881426 -99863472 - L1MA9 LINE L1 -255 6057 6005 235 316 103 32 chr13 19882699 19882854 -99862044 - MIR SINE MIR -16 246 81 209 214 24 48 chr13 19883229 19883313 -99861585 + A-rich Low_complexity Low_complexity 4 85 0 711 51 24 55 chr13 19885519 19885776 -99859122 + (TCTA)n Simple_repeat Simple_repeat 1 248 0 605 305 79 49 chr13 19886421 19887018 -99857880 - L1ME2 LINE L1 -293 5871 5257 410 329 48 14 chr13 19887122 19887268 -99857630 + MIR3 SINE MIR 40 190 -18 188 319 78 35 chr13 19887456 19887597 -99857301 + L2 LINE L2 3124 3270 -43 2262 100 7 0 chr13 19887957 19888256 -99856642 - AluSc SINE Alu -8 301 1 2646 98 3 35 chr13 19888610 19888671 -99856227 - THE1A LTR MaLR 0 355 294 2405 54 3 7 chr13 19888671 19888969 -99855929 - AluY SINE Alu -14 297 1 2646 98 3 35 chr13 19888969 19889274 -99855624 - THE1A LTR MaLR -61 294 1 829 181 0 0 chr13 19889838 19889976 -99854922 + FLAM_C SINE Alu 1 138 -5 1546 174 15 58 chr13 19889980 19890308 -99854590 + 7SLRNA srpRNA srpRNA 2 315 -5 2715 48 0 0 chr13 19890639 19890949 -99853949 + AluY SINE Alu 1 310 -1 2270 95 0 10 chr13 19891615 19891921 -99852977 - AluSx SINE Alu -9 303 1 186 314 54 50 chr13 19892248 19892487 -99852411 + L2 LINE L2 2602 2841 -473 331 78 78 0 chr13 19893105 19893156 -99851742 - MLT2A1 LTR ERVL 0 453 399 361 144 61 0 chr13 19893164 19893296 -99851602 + (TA)n Simple_repeat Simple_repeat 2 141 0 3126 53 23 5 chr13 19893298 19893691 -99851207 - MLT2A1 LTR ERVL -44 400 1 396 224 197 67 chr13 19893691 19893812 -99851086 + MARNA DNA Mariner 188 291 -295 2103 142 0 0 chr13 19893812 19894115 -99850783 - AluJb SINE Alu -9 303 1 396 224 197 67 chr13 19894115 19894239 -99850659 + MARNA DNA Mariner 291 466 -120 580 300 12 33 chr13 19895157 19895400 -99849498 + MIR SINE MIR 18 255 -7 393 298 39 44 chr13 19897216 19897397 -99847501 - MIR SINE MIR -70 192 13 746 171 0 8 chr13 19897516 19897645 -99847253 + FLAM_C SINE Alu 1 128 -5 1187 197 79 48 chr13 19897660 19897950 -99846948 + AluJo SINE Alu 2 300 -2 2119 104 24 3 chr13 19898187 19898475 -99846423 - AluSc SINE Alu -15 294 1 2251 94 44 0 chr13 19898535 19898832 -99846066 + AluSg SINE Alu 1 310 0 227 233 0 0 chr13 19900225 19900268 -99844630 - MER58A DNA MER1_type -5 219 177 446 227 0 0 chr13 19900268 19900356 -99844542 - MER58A DNA MER1_type 0 148 61 820 252 233 22 chr13 19900356 19900713 -99844185 + MER57A LTR ERV1 1 401 -2 270 299 30 0 chr13 19900713 19900777 -99844121 - MER58A DNA MER1_type -41 66 1 308 257 18 44 chr13 19901406 19901519 -99843379 - L2 LINE L2 0 3313 3204 1277 193 4 12 chr13 19902229 19902478 -99842420 + L1MB7 LINE L1 5649 5895 -289 1188 142 5 0 chr13 19902486 19902676 -99842222 - MER46B DNA MER2_type 0 236 46 5975 115 12 35 chr13 19902883 19903958 -99840940 - L1PB3 LINE L1 -2 6152 5097 682 134 225 0 chr13 19903961 19904103 -99840795 - MER46B DNA MER2_type -187 49 1 241 88 147 118 chr13 19904063 19904104 -99840794 + MER46A DNA MER2_type 97 142 -2589 * 1361 204 0 31 chr13 19904104 19904393 -99840505 + L1MB7 LINE L1 5904 6183 -1 241 88 147 118 chr13 19904393 19904419 -99840479 + MER46A DNA MER2_type 142 166 -70 21 0 0 0 chr13 19904630 19904651 -99840247 + AT_rich Low_complexity Low_complexity 1 21 0 2556 171 28 19 chr13 19905692 19906223 -99838675 - L1MA9 LINE L1 -2217 3929 3394 * 6660 164 52 15 chr13 19906218 19908356 -99836542 + L1MA9 LINE L1 3943 6164 -148 306 0 0 0 chr13 19908356 19908390 -99836508 + (CA)n Simple_repeat Simple_repeat 1 34 0 6660 164 52 15 chr13 19908390 19908472 -99836426 + L1MA9 LINE L1 6164 6242 -70 21 36 0 0 chr13 19908498 19908526 -99836372 + AT_rich Low_complexity Low_complexity 1 28 0 2071 141 0 3 chr13 19908594 19908891 -99836007 + AluJo SINE Alu 1 296 -16 2327 88 0 20 chr13 19909396 19909702 -99835196 - AluSq SINE Alu -13 300 1 261 239 64 46 chr13 19910369 19910478 -99834420 + MIR3 SINE MIR 90 200 -8 191 296 70 43 chr13 19910685 19910800 -99834098 - L2 LINE L2 -896 2418 2301 273 316 20 0 chr13 19912959 19913057 -99831841 + MER5A DNA MER1_type 10 109 -80 408 20 0 0 chr13 19913170 19913219 -99831679 + (TC)n Simple_repeat Simple_repeat 2 50 0 207 184 41 20 chr13 19914152 19914201 -99830697 - L3 LINE CR1 -40 1537 1488 259 349 34 20 chr13 19914203 19914352 -99830546 - L2 LINE L2 0 3272 3122 2464 54 7 0 chr13 19914511 19914807 -99830091 + AluY SINE Alu 1 298 -13 702 275 96 9 chr13 19914841 19915070 -99829828 - MIR SINE MIR -13 249 1 2497 149 23 44 chr13 19915252 19915734 -99829164 - L1MB3 LINE L1 0 6183 5712 208 365 45 5 chr13 19915828 19916050 -99828848 - L2 LINE L2 -662 2652 2422 2276 101 3 3 chr13 19916218 19916516 -99828382 + AluSq SINE Alu 6 303 -10 183 42 0 0 chr13 19916595 19916619 -99828279 + (CAAAC)n Simple_repeat Simple_repeat 2 25 0 325 380 0 0 chr13 19916813 19916971 -99827927 - L3 LINE CR1 -366 1211 1054 298 256 24 32 chr13 19917375 19917500 -99827398 - MIR SINE MIR -119 143 20 268 330 41 0 chr13 19918057 19918154 -99826744 + L2 LINE L2 3159 3259 -13 289 326 46 17 chr13 19918363 19918538 -99826360 + L1MC/D LINE L1 5694 5873 -1935 203 254 34 0 chr13 19918758 19918817 -99826081 + (TA)n Simple_repeat Simple_repeat 2 62 0 203 239 0 34 chr13 19918871 19918959 -99825939 + (TAAA)n Simple_repeat Simple_repeat 2 86 0 285 275 225 14 chr13 19919354 19919496 -99825402 + MER5B DNA MER1_type 6 177 -1 224 293 11 98 chr13 19919583 19919757 -99825141 + MER5A DNA MER1_type 1 159 -30 2540 61 48 40 chr13 19920161 19920540 -99824358 - L1PA5 LINE L1 -3 6151 5770 187 405 32 16 chr13 19921452 19921578 -99823320 + L3 LINE CR1 3 130 -1447 530 166 0 151 chr13 19921734 19921873 -99823025 + MLT2D LTR ERVL 295 412 -2 2043 66 0 0 chr13 19922166 19922407 -99822491 + AluY SINE Alu 1 241 -70 194 316 103 32 chr13 19923164 19923319 -99821579 - MIR SINE MIR -16 246 81 209 214 24 48 chr13 19923694 19923778 -99821120 + A-rich Low_complexity Low_complexity 4 85 0 377 51 25 38 chr13 19925982 19926061 -99818837 + (TCTA)n Simple_repeat Simple_repeat 3 80 0 1050 187 72 59 chr13 19926216 19926428 -99818470 + L1MA9 LINE L1 5946 6179 -121 324 0 0 0 chr13 19926428 19926464 -99818434 + (CA)n Simple_repeat Simple_repeat 1 36 0 1050 187 72 59 chr13 19926464 19926588 -99818310 + L1MA9 LINE L1 6179 6300 0 2071 141 0 3 chr13 19926668 19926965 -99817933 + AluJo SINE Alu 1 296 -16 2293 91 0 23 chr13 19927470 19927777 -99817121 - AluSq SINE Alu -13 300 1 261 239 64 46 chr13 19928444 19928553 -99816345 + MIR3 SINE MIR 90 200 -8 191 296 70 43 chr13 19928760 19928875 -99816023 - L2 LINE L2 -896 2418 2301 273 316 20 0 chr13 19931034 19931132 -99813766 + MER5A DNA MER1_type 10 109 -80 408 20 0 0 chr13 19931245 19931294 -99813604 + (TC)n Simple_repeat Simple_repeat 2 50 0 207 184 41 20 chr13 19932227 19932276 -99812622 - L3 LINE CR1 -40 1537 1488 259 349 34 20 chr13 19932278 19932427 -99812471 - L2 LINE L2 0 3272 3122 2464 54 7 0 chr13 19932586 19932882 -99812016 + AluY SINE Alu 1 298 -13 702 275 96 9 chr13 19932916 19933145 -99811753 - MIR SINE MIR -13 249 1 2497 149 23 44 chr13 19933327 19933809 -99811089 - L1MB3 LINE L1 0 6183 5712 208 365 45 5 chr13 19933903 19934125 -99810773 - L2 LINE L2 -662 2652 2422 1996 127 0 10 chr13 19934293 19934584 -99810314 + AluSq SINE Alu 6 293 -20 2189 84 34 7 chr13 19934598 19934895 -99810003 + AluY SINE Alu 1 305 -6 2717 181 81 41 chr13 19935327 19936424 -99808474 + pTR5 LTR ERV1 11 581 -133 234 273 0 15 chr13 19937092 19937158 -99807740 - L1MC5 LINE L1 -48 7913 7849 1328 194 113 40 chr13 19937442 19937788 -99807110 - MLT1A2 LTR MaLR 0 374 4 496 284 68 4 chr13 19937793 19938067 -99806831 - L1MC4 LINE L1 -387 7655 7260 370 239 138 0 chr13 19938172 19938310 -99806588 - L1ME4a LINE L1 0 6121 5965 324 247 0 12 chr13 19938761 19938846 -99806052 + MER5A DNA MER1_type 26 109 -80 464 311 45 0 chr13 19939100 19939277 -99805621 + MIR SINE MIR 78 262 0 4777 158 35 22 chr13 19941462 19942352 -99802546 - L1MB3 LINE L1 0 6183 5283 649 298 44 116 chr13 19944712 19945125 -99799773 + L2 LINE L2 2884 3266 -6 4314 126 88 45 chr13 19945474 19946227 -99798671 + LTR1 LTR ERV1 1 785 0 181 275 28 128 chr13 19946288 19946397 -99798501 + L2 LINE L2 3127 3224 -48 646 333 185 28 chr13 19946504 19947261 -99797637 - L3 LINE CR1 -665 912 37 4258 111 65 6 chr13 19947973 19948605 -99796293 - L1PA16 LINE L1 -3 6163 5495 22 35 0 0 chr13 19948948 19948977 -99795921 + AT_rich Low_complexity Low_complexity 1 29 0 1662 108 48 4 chr13 19949280 19949548 -99795350 + L1PB4 LINE L1 5333 5612 -544 3416 118 13 104 chr13 19949548 19949630 -99795268 - LTR12 LTR ERV1 -134 580 492 2000 110 18 0 chr13 19949630 19949911 -99794987 - AluY SINE Alu -10 301 16 3416 118 13 104 chr13 19949911 19950465 -99794433 - LTR12 LTR ERV1 -222 492 2 3209 152 42 0 chr13 19950465 19950993 -99793905 + L1PB4 LINE L1 5607 6156 0 284 281 0 0 chr13 19952052 19952116 -99792782 + MER97b DNA MER1_type? 981 1044 -9 2429 80 3 0 chr13 19953450 19953750 -99791148 - AluY SINE Alu -10 301 1 253 250 238 0 chr13 19953750 19953834 -99791064 + MIR3 SINE MIR 102 205 -3 267 283 17 0 chr13 19953917 19953977 -99790921 + L2 LINE L2 3123 3183 -89 1149 158 5 0 chr13 19954031 19954221 -99790677 - L1MA5 LINE L1 0 6300 6110 208 240 60 0 chr13 19956198 19956248 -99788650 + MIR SINE MIR 83 135 -73 201 238 0 0 chr13 19956455 19956497 -99788401 + (TG)n Simple_repeat Simple_repeat 1 42 0 21 0 0 0 chr13 19957009 19957030 -99787868 + AT_rich Low_complexity Low_complexity 1 21 0 2286 165 6 15 chr13 19959678 19960107 -99784791 + L1MA6 LINE L1 5621 6050 -250 1018 122 8 141 chr13 19960081 19960343 -99784555 + L1MB8 LINE L1 5899 6125 -53 * 34 0 0 0 chr13 19960343 19960377 -99784521 + AT_rich Low_complexity Low_complexity 1 34 0 2365 50 3 23 chr13 19960617 19960919 -99783979 + AluY SINE Alu 1 296 -15 189 274 0 0 chr13 19960981 19961032 -99783866 - L2 LINE L2 -1012 2302 2252 2336 74 3 16 chr13 19961348 19961660 -99783238 - AluY SINE Alu -3 308 1 196 326 153 0 chr13 19961664 19961762 -99783136 + L2 LINE L2 3197 3309 -4 2489 77 0 0 chr13 19962054 19962364 -99782534 - AluY SINE Alu -1 310 1 1560 177 27 17 chr13 19962652 19962951 -99781947 - AluJo SINE Alu -10 302 1 2399 70 0 16 chr13 19962951 19963266 -99781632 - AluY SINE Alu -1 310 1 643 109 22 51 chr13 19963272 19963410 -99781488 - L1MB8 LINE L1 0 6178 6045 3087 147 5 49 chr13 19963580 19964150 -99780748 - L1MA10 LINE L1 0 6334 5790 2581 211 116 33 chr13 19964169 19964919 -99779979 + MER21B LTR ERV1 12 823 -40 284 269 13 0 chr13 19964990 19965068 -99779830 - L1MA10 LINE L1 -385 5783 5705 2449 59 0 3 chr13 19965156 19965460 -99779438 - AluY SINE Alu -6 305 3 691 0 45 0 chr13 19966089 19966178 -99778720 + (TTTC)n Simple_repeat Simple_repeat 2 94 0 1876 153 0 0 chr13 19966188 19966462 -99778436 - AluSx SINE Alu -38 274 1 219 139 0 0 chr13 19966934 19966970 -99777928 + (TC)n Simple_repeat Simple_repeat 2 37 0 214 260 0 39 chr13 19967183 19967260 -99777638 + (TCTCTG)n Simple_repeat Simple_repeat 4 77 0 402 281 59 51 chr13 19968280 19968499 -99776399 - MIR SINE MIR -33 229 11 794 56 0 1 chr13 19970827 19971104 -99773794 + AluY SINE Alu 15 327 0 667 291 36 47 chr13 19971424 19971689 -99773209 - MIR SINE MIR -1 261 5 21 71 0 0 chr13 19971978 19972020 -99772878 + AT_rich Low_complexity Low_complexity 1 42 0 2218 95 0 26 chr13 19972020 19972324 -99772574 - AluSq SINE Alu -17 296 1 2617 105 3 6 chr13 19972687 19973050 -99771848 - L1PB1 LINE L1 -7 6860 6499 498 126 0 27 chr13 19973051 19973162 -99771736 + (TA)n Simple_repeat Simple_repeat 1 108 0 317 100 117 0 chr13 19973162 19973222 -99771676 - L1PB1 LINE L1 -360 6507 6441 44931 38 2 6 chr13 19973225 19979405 -99765493 - L1PA3 LINE L1 0 6155 1 15686 168 35 11 chr13 19979405 19984621 -99760277 - L1PB1 LINE L1 -412 6455 1102 1545 141 114 15 chr13 19984649 19984912 -99759986 - AluJo SINE Alu -23 289 1 237 234 135 50 chr13 19984919 19985060 -99759838 - L1ME LINE L1 -392 5761 5609 2255 99 0 3 chr13 19985081 19985375 -99759523 - AluY SINE Alu -16 295 3 351 273 146 19 chr13 19985681 19985996 -99758902 - L1ME LINE L1 -805 5324 4970 428 256 45 23 chr13 19986247 19986423 -99758475 - L1ME LINE L1 -4980 1139 960 207 162 48 9 chr13 19986428 19986533 -99758365 + (TA)n Simple_repeat Simple_repeat 1 109 0 818 178 0 0 chr13 19986549 19986684 -99758214 - FRAM SINE Alu -5 171 37 826 297 111 46 chr13 19986835 19987546 -99757352 - L1ME LINE L1 -5328 791 35 2226 108 3 6 chr13 19988107 19988421 -99756477 + AluSp SINE Alu 1 313 0 214 344 0 0 chr13 19988538 19988599 -99756299 - L2 LINE L2 -26 3287 3227 201 171 0 0 chr13 19989358 19989393 -99755505 + A-rich Low_complexity Low_complexity 1 35 0 22 0 0 0 chr13 19991126 19991148 -99753750 + AT_rich Low_complexity Low_complexity 1 22 0 565 196 0 105 chr13 19991854 19992007 -99752891 - Charlie1 DNA MER1_type -2 2759 2623 * 776 236 107 9 chr13 19991994 19992210 -99752688 - Charlie1 DNA MER1_type -2522 239 3 282 366 53 0 chr13 19992292 19992423 -99752475 + MIR SINE MIR 8 145 -117 1581 172 0 0 chr13 19993642 19993910 -99750988 - AluSx SINE Alu -14 298 31 1582 188 30 73 chr13 19993911 19994309 -99750589 - LTR12 LTR ERV1 -234 480 100 278 209 57 76 chr13 19994313 19994418 -99750480 - AluS SINE Alu -228 75 1 1424 142 69 76 chr13 19994426 19994715 -99750183 - AluJo SINE Alu -14 288 2 275 289 73 35 chr13 19994722 19994875 -99750023 + MIR SINE MIR 30 198 -10 224 363 22 0 chr13 19995059 19995150 -99749748 - MIR SINE MIR -93 115 23 * 984 245 4 13 chr13 19995147 19995380 -99749518 + MIR SINE MIR 32 262 0 386 269 11 0 chr13 19998870 19998963 -99745935 + MIR SINE MIR 120 213 -49 459 0 0 0 chr13 19999370 19999421 -99745477 + (TTCC)n Simple_repeat Simple_repeat 2 52 0 183 42 0 0 chr13 19999421 19999445 -99745453 + (TC)n Simple_repeat Simple_repeat 1 24 0 2193 82 14 0 chr13 19999445 19999738 -99745160 - AluY SINE Alu -14 297 1 266 235 74 49 chr13 20000080 20000161 -99744737 - L2 LINE L2 0 3313 3231 284 0 28 0 chr13 20001486 20001522 -99743376 + (TG)n Simple_repeat Simple_repeat 2 38 0 306 298 150 9 chr13 20002690 20002834 -99742064 + MIR SINE MIR 13 162 -67 751 288 212 15 chr13 20003141 20003999 -99740899 - L2 LINE L2 -5 3308 2271 321 47 0 0 chr13 20005366 20005409 -99739489 + (CA)n Simple_repeat Simple_repeat 1 43 0 420 55 0 0 chr13 20005598 20005653 -99739245 + (TG)n Simple_repeat Simple_repeat 2 56 0 427 188 22 28 chr13 20006683 20006864 -99738034 + (CATA)n Simple_repeat Simple_repeat 1 180 0 452 247 6 13 chr13 20006912 20007355 -99737543 + (CA)n Simple_repeat Simple_repeat 1 439 0 271 261 15 0 chr13 20007392 20007526 -99737372 + (CA)n Simple_repeat Simple_repeat 1 136 0 2178 69 7 10 chr13 20009276 20009586 -99735312 + AluY SINE Alu 1 309 0 525 146 0 0 chr13 20009900 20009982 -99734916 + AluS SINE Alu 2 83 -230 1797 114 66 0 chr13 20010213 20010484 -99734414 - AluSx SINE Alu -19 293 5 23 54 0 0 chr13 20012800 20012837 -99732061 + AT_rich Low_complexity Low_complexity 1 37 0 287 238 38 12 chr13 20013381 20013461 -99731437 + MER5A DNA MER1_type 102 183 -6 411 228 203 19 chr13 20013551 20013709 -99731189 + MER5A DNA MER1_type 1 187 -2 514 269 167 6 chr13 20013723 20013879 -99731019 - MER5A DNA MER1_type -5 184 4 183 289 0 0 chr13 20014091 20014136 -99730762 + L2 LINE L2 3269 3313 0 7310 33 0 5 chr13 20017512 20018370 -99726528 + L1PA4 LINE L1 5301 6154 -1 312 356 46 8 chr13 20019808 20019872 -99725026 + L2 LINE L2 2815 2875 -397 2478 138 74 2 chr13 20019872 20020292 -99724606 - LTR47A LTR ERVL 0 452 3 312 356 46 8 chr13 20020292 20020466 -99724432 + L2 LINE L2 2875 3062 -210 314 280 63 74 chr13 20020950 20021125 -99723773 - MLT1I LTR MaLR -2 407 235 4081 155 93 22 chr13 20021471 20021967 -99722931 - MER6 DNA MER2_type 0 865 289 192 77 0 0 chr13 20021967 20021993 -99722905 + (TTCA)n Simple_repeat Simple_repeat 3 28 0 4081 155 93 22 chr13 20021993 20022302 -99722596 - MER6 DNA MER2_type -576 289 3 257 310 100 0 chr13 20022906 20023006 -99721892 - L2 LINE L2 -40 3273 3164 206 273 156 13 chr13 20023205 20023282 -99721616 + L2 LINE L2 3185 3272 0 644 100 8 0 chr13 20023471 20023591 -99721307 + (TG)n Simple_repeat Simple_repeat 2 122 0 1677 166 0 16 chr13 20025176 20025483 -99719415 + AluJb SINE Alu 1 302 -10 378 381 40 6 chr13 20026052 20026225 -99718673 - MER5A DNA MER1_type -10 179 1 2132 112 3 3 chr13 20027863 20028175 -99716723 + AluSx SINE Alu 1 312 0 275 338 49 56 chr13 20028487 20028792 -99716106 + L2 LINE L2 3005 3307 -6 229 181 57 48 chr13 20029369 20029474 -99715424 + MER113 DNA MER1_type? 115 220 -301 319 356 9 0 chr13 20029563 20029678 -99715220 + MIR SINE MIR 35 150 -112 1634 177 27 7 chr13 20030530 20030829 -99714069 + AluJb SINE Alu 1 305 -7 22 0 0 0 chr13 20030831 20030853 -99714045 + AT_rich Low_complexity Low_complexity 1 22 0 27 49 0 0 chr13 20031052 20031093 -99713805 + AT_rich Low_complexity Low_complexity 1 41 0 254 314 83 58 chr13 20031626 20031942 -99712956 - L2 LINE L2 -218 3054 2716 250 319 154 21 chr13 20032312 20032500 -99712398 + MIR SINE MIR 44 256 -6 419 35 18 0 chr13 20032664 20032721 -99712177 + (TCCA)n Simple_repeat Simple_repeat 1 58 0 275 305 150 55 chr13 20032866 20033066 -99711832 + L2 LINE L2 2263 2481 -833 2261 85 0 0 chr13 20033229 20033524 -99711374 - AluY SINE Alu -16 295 1 1191 263 83 97 chr13 20034089 20034790 -99710108 + MER21B LTR ERV1 24 714 -149 217 327 0 0 chr13 20035267 20035319 -99709579 - L3 LINE CR1 -7 1570 1519 194 216 0 0 chr13 20035330 20035367 -99709531 + L2 LINE L2 3276 3312 -1 180 246 40 103 chr13 20035365 20035491 -99709407 - MIR SINE MIR -73 135 18 * 195 348 29 0 chr13 20036580 20036649 -99708249 + MIR SINE MIR 79 149 -113 5999 121 234 85 chr13 20036686 20038163 -99706735 - pTR5 LTR ERV1 0 2438 743 496 268 0 0 chr13 20039393 20039505 -99705393 - MIR SINE MIR -88 174 63 275 268 24 102 chr13 20039729 20039856 -99705042 - MLT1L LTR MaLR -248 367 251 665 152 0 9 chr13 20040369 20040474 -99704424 - AluSg/x SINE Alu -13 299 196 278 342 36 9 chr13 20040476 20040604 -99704294 - MIR SINE MIR -62 146 18 220 194 0 0 chr13 20041695 20041731 -99703167 + polypurine Low_complexity Low_complexity 4 39 0 275 292 91 7 chr13 20042022 20042176 -99702722 + MER91A DNA MER1_type 27 193 -3 189 366 14 0 chr13 20042512 20042583 -99702315 + MIR SINE MIR 158 229 -33 2104 161 106 3 chr13 20043771 20044157 -99700741 - MSTB LTR MaLR 0 426 1 1405 190 52 78 chr13 20044324 20044724 -99700174 + MLT1B LTR MaLR 1 390 0 2209 73 14 10 chr13 20045371 20045660 -99699238 + AluY SINE Alu 1 290 -21 234 0 0 0 chr13 20045660 20045686 -99699212 + (TA)n Simple_repeat Simple_repeat 2 27 0 225 0 0 0 chr13 20046244 20046269 -99698629 + (T)n Simple_repeat Simple_repeat 1 25 0 2182 110 7 23 chr13 20047021 20047330 -99697568 - AluSx SINE Alu -8 304 1 344 310 23 18 chr13 20047885 20048056 -99696842 + GA-rich Low_complexity Low_complexity 2 173 0 181 250 42 0 chr13 20049247 20049295 -99695603 - MIR3 SINE MIR -6 202 153 266 360 18 0 chr13 20049404 20049518 -99695380 - MIR SINE MIR -124 138 23 419 35 18 0 chr13 20050587 20050644 -99694254 + (TCCA)n Simple_repeat Simple_repeat 1 58 0 220 305 150 55 chr13 20050789 20050989 -99693909 + L2 LINE L2 2263 2481 -833 1910 145 3 0 chr13 20051153 20051443 -99693455 - AluSx SINE Alu -16 296 6 222 292 100 17 chr13 20051601 20051721 -99693177 + MIR SINE MIR 67 196 -66 2162 123 0 0 chr13 20051834 20052126 -99692772 - AluSx SINE Alu -20 292 1 2294 134 3 0 chr13 20052922 20053265 -99691633 - L1PA16 LINE L1 -9 6157 5814 786 144 0 0 chr13 20053408 20053533 -99691365 - L1PA16 LINE L1 -558 5608 5484 219 304 14 108 chr13 20053590 20053651 -99691247 - L2 LINE L2 0 3272 3207 2167 81 33 0 chr13 20053651 20053923 -99690975 + AluSq SINE Alu 1 281 -32 240 35 0 0 chr13 20053925 20053954 -99690944 + (GAAAA)n Simple_repeat Simple_repeat 2 30 0 219 304 14 108 chr13 20053954 20054037 -99690861 - L2 LINE L2 -66 3206 3139 466 228 53 53 chr13 20054388 20054577 -99690321 - L2 LINE L2 0 3313 3125 1148 249 150 3 chr13 20055529 20055960 -99688938 + MER110A LTR ERV1 3 477 0 2016 153 35 3 chr13 20056068 20056485 -99688413 + L1MC2 LINE L1 5185 5614 -719 462 170 203 17 chr13 20056485 20056610 -99688288 + MLT1A1 LTR MaLR 1 161 -213 6715 94 8 9 chr13 20056616 20056893 -99688005 + L1PA10 LINE L1 4686 4962 -1206 2268 86 0 30 chr13 20056893 20057197 -99687701 + AluY SINE Alu 1 295 -16 6715 94 8 9 chr13 20057197 20058375 -99686523 + L1PA10 LINE L1 4962 6136 -32 714 141 70 8 chr13 20058583 20058711 -99686187 + MLT1A1 LTR MaLR 226 361 -4 3577 169 37 23 chr13 20058716 20059416 -99685482 + L1MC2 LINE L1 5626 6335 -9 276 30 0 0 chr13 20061524 20061557 -99683341 + (TG)n Simple_repeat Simple_repeat 2 34 0 2002 148 3 3 chr13 20061672 20061970 -99682928 + AluJb SINE Alu 1 298 -14 312 252 72 65 chr13 20062178 20062363 -99682535 + LTR48B LTR ERV1 337 634 -10 308 231 141 16 chr13 20063791 20063912 -99680986 - MIR SINE MIR -16 246 111 621 260 39 0 chr13 20064152 20064333 -99680565 + MER20 DNA MER1_type 31 218 -1 2107 104 10 7 chr13 20064651 20064940 -99679958 + AluSg1 SINE Alu 1 290 -19 237 291 88 34 chr13 20065099 20065247 -99679651 + L2 LINE L2 2895 3050 -263 220 288 0 0 chr13 20065272 20065331 -99679567 + L2 LINE L2 3183 3241 -72 404 126 42 36 chr13 20065382 20065549 -99679349 + (TG)n Simple_repeat Simple_repeat 2 169 0 300 120 53 27 chr13 20065654 20065804 -99679094 + (TG)n Simple_repeat Simple_repeat 1 154 0 245 167 52 31 chr13 20065825 20065921 -99678977 + (TG)n Simple_repeat Simple_repeat 1 98 0 4390 126 62 23 chr13 20067272 20068013 -99676885 + LTR1 LTR ERV1 16 785 0 1076 204 50 11 chr13 20069831 20070091 -99674807 + MER33 DNA MER1_type 17 286 -38 189 121 0 0 chr13 20071015 20071048 -99673850 + (CAAAG)n Simple_repeat Simple_repeat 2 34 0 2228 122 0 0 chr13 20071957 20072260 -99672638 + AluSx SINE Alu 1 303 -9 327 49 0 0 chr13 20074252 20074293 -99670605 + (TG)n Simple_repeat Simple_repeat 1 41 0 362 57 19 0 chr13 20074409 20074462 -99670436 + (TG)n Simple_repeat Simple_repeat 1 54 0 2177 177 64 3 chr13 20074945 20075342 -99669556 + MSTB LTR MaLR 1 356 -8 28 0 0 0 chr13 20075773 20075801 -99669097 + AT_rich Low_complexity Low_complexity 1 28 0 1233 228 62 34 chr13 20076747 20077103 -99667795 - MLT1A2 LTR MaLR -8 366 1 945 164 0 7 chr13 20077371 20077523 -99667375 - AluJb SINE Alu -20 292 142 262 224 48 79 chr13 20080794 20080883 -99664015 + L1ME4a LINE L1 5959 6042 -79 2464 83 0 3 chr13 20080883 20081195 -99663703 - AluY SINE Alu 0 311 1 262 224 48 79 chr13 20081195 20081270 -99663628 + L1ME4a LINE L1 6042 6118 -3 661 320 34 10 chr13 20081607 20081904 -99662994 + L1M4 LINE L1 3562 3865 -2281 1008 246 98 20 chr13 20082422 20082862 -99662036 + L1M4 LINE L1 3997 4470 -1676 10141 160 42 15 chr13 20082862 20084671 -99660227 + Tigger4(Zombi) DNA MER2_type 1 1858 -873 299 195 171 0 chr13 20085740 20085822 -99659076 - MER5A DNA MER1_type -80 109 14 319 98 0 0 chr13 20087013 20087064 -99657834 + L1MA3 LINE L1 6124 6174 -131 272 313 0 0 chr13 20087887 20087954 -99656944 + polypyrimidine Low_complexity Low_complexity 3 69 0 2263 257 69 35 chr13 20088105 20088973 -99655925 - L1ME1 LINE L1 -15 6220 5323 504 240 76 20 chr13 20088984 20089234 -99655664 - L1ME1 LINE L1 -1229 4986 4723 513 272 86 50 chr13 20090428 20090847 -99654051 - L1ME1 LINE L1 -1907 4308 3875 670 300 69 23 chr13 20090868 20091391 -99653507 - L1ME1 LINE L1 -3248 2967 2421 226 197 118 0 chr13 20091387 20091463 -99653435 - L1ME1 LINE L1 -3707 2508 2424 * 2383 96 0 0 chr13 20091515 20091817 -99653081 - AluSg SINE Alu -8 302 1 277 213 124 41 chr13 20091817 20091986 -99652912 - L1ME1 LINE L1 -4099 2297 2115 367 137 27 0 chr13 20092150 20092223 -99652675 + GA-rich Low_complexity Low_complexity 2 76 0 359 282 143 32 chr13 20092259 20092448 -99652450 - L1ME1 LINE L1 -4595 1801 1584 2156 97 6 59 chr13 20092448 20092769 -99652129 - AluSq SINE Alu -9 304 1 359 282 143 32 chr13 20092769 20092795 -99652103 - L1ME1 LINE L1 -4812 1584 1562 1295 174 98 98 chr13 20092838 20093299 -99651599 + LTR1 LTR ERV1 1 461 -324 980 119 26 7 chr13 20093302 20093453 -99651445 + LTR1 LTR ERV1 632 785 0 272 273 120 24 chr13 20093521 20093730 -99651168 - L1ME1 LINE L1 -4897 1499 1271 616 271 42 47 chr13 20094287 20094479 -99650419 + MER58D DNA MER1_type 2 192 -194 331 281 0 22 chr13 20094479 20094568 -99650330 + MLT1D LTR MaLR 1 87 -539 987 236 65 11 chr13 20094616 20094879 -99650019 + MLT1C LTR MaLR 1 277 -190 676 160 9 0 chr13 20095034 20095140 -99649758 - MLT1D LTR MaLR -398 107 1 693 169 30 60 chr13 20095141 20095323 -99649575 + MLT1C LTR MaLR 304 463 -4 1180 227 15 91 chr13 20095349 20095754 -99649144 + MLT1D LTR MaLR 132 505 0 846 180 52 21 chr13 20095754 20095947 -99648951 + MER58D DNA MER1_type 188 386 0 2106 186 10 18 chr13 20096342 20096741 -99648157 + MSTD LTR MaLR 1 396 0 443 277 0 27 chr13 20097112 20097296 -99647602 + (TG)n Simple_repeat Simple_repeat 2 180 0 386 309 0 0 chr13 20097328 20097496 -99647402 + (TG)n Simple_repeat Simple_repeat 2 169 0 357 286 17 11 chr13 20097572 20097750 -99647148 + (TG)n Simple_repeat Simple_repeat 1 179 0 239 0 32 0 chr13 20099436 20099467 -99645431 + (CA)n Simple_repeat Simple_repeat 1 32 0 190 318 112 0 chr13 20100881 20100988 -99643910 - L2 LINE L2 0 3272 3154 243 284 99 0 chr13 20101804 20101885 -99643013 - L2 LINE L2 -15 3298 3210 210 118 0 0 chr13 20102221 20102255 -99642643 + (A)n Simple_repeat Simple_repeat 1 34 0 1804 141 106 62 chr13 20102374 20102664 -99642234 - LTR47A LTR ERVL 0 452 135 2126 113 10 7 chr13 20102664 20102973 -99641925 - AluSq SINE Alu -3 310 1 1804 141 106 62 chr13 20102973 20103115 -99641783 - LTR47A LTR ERVL -317 135 1 1949 149 52 19 chr13 20104372 20104735 -99640163 - THE1C LTR MaLR 0 375 1 435 98 0 49 chr13 20104735 20104817 -99640081 - THE1C-int LTR MaLR 0 1580 1503 9063 122 68 9 chr13 20104963 20106349 -99638549 - THE1C-int LTR MaLR -112 1468 1 1863 122 70 57 chr13 20106349 20106719 -99638179 - THE1C LTR MaLR 0 375 1 2300 66 11 0 chr13 20109864 20110188 -99634710 - AluYb8 SINE Alu 0 327 1 2194 123 0 13 chr13 20110835 20111145 -99633753 - AluSx SINE Alu -6 306 1 1668 128 15 11 chr13 20112531 20112796 -99632102 - Tigger2 DNA MER2_type -10 2708 2443 4549 142 16 19 chr13 20112863 20113611 -99631287 - Tigger2 DNA MER2_type -1972 746 1 213 139 0 0 chr13 20114389 20114432 -99630466 + (TC)n Simple_repeat Simple_repeat 2 44 0 1701 113 52 8 chr13 20115284 20115558 -99629340 - AluSx SINE Alu 0 312 38 229 368 26 0 chr13 20116310 20116424 -99628474 + MIR SINE MIR 32 148 -114 269 140 18 0 chr13 20116588 20116645 -99628253 + CT-rich Low_complexity Low_complexity 1 58 0 1907 129 14 10 chr13 20116645 20116940 -99627958 - AluSx SINE Alu -4 308 13 183 42 0 0 chr13 20116940 20116964 -99627934 + (GCCTG)n Simple_repeat Simple_repeat 1 24 0 2382 98 0 0 chr13 20116969 20117266 -99627632 - AluSx SINE Alu -11 301 5 186 118 0 0 chr13 20118768 20118802 -99626096 + (CA)n Simple_repeat Simple_repeat 2 35 0 342 68 0 0 chr13 20119830 20119874 -99625024 - AluSp/q SINE Alu -36 267 224 318 111 0 0 chr13 20120648 20120693 -99624205 - L1MA5 LINE L1 -412 5888 5844 2950 260 143 40 chr13 20120693 20122359 -99622539 - L1M4 LINE L1 -768 5378 3540 847 250 14 111 chr13 20122367 20122711 -99622187 + MLT1D-int LTR MaLR 1055 1365 -6 730 176 38 109 chr13 20122720 20122958 -99621940 + MLT1D LTR MaLR 1 221 -284 287 326 45 7 chr13 20122981 20123247 -99621651 + L2 LINE L2 2933 3272 0 202 274 32 0 chr13 20123980 20124042 -99620856 - L2 LINE L2 0 3272 3209 2469 65 13 3 chr13 20124367 20124674 -99620224 - AluY SINE Alu -1 310 1 2191 91 0 60 chr13 20124977 20125296 -99619602 - AluSx SINE Alu -12 300 1 25 0 0 0 chr13 20125296 20125321 -99619577 + AT_rich Low_complexity Low_complexity 1 25 0 3077 127 52 2 chr13 20125321 20125816 -99619082 - L1MA3 LINE L1 0 6305 5786 713 93 0 9 chr13 20125916 20126024 -99618874 + L1PA8 LINE L1 6066 6172 0 1985 118 75 31 chr13 20127059 20127408 -99617490 - THE1B LTR MaLR 0 364 1 11518 105 6 1 chr13 20127408 20128981 -99615917 - THE1B-int LTR MaLR 0 1580 1 1586 147 28 28 chr13 20128981 20129266 -99615632 - THE1B LTR MaLR 0 364 80 449 119 81 0 chr13 20129397 20129557 -99615341 + (TA)n Simple_repeat Simple_repeat 1 173 0 474 180 19 1 chr13 20129557 20129661 -99615237 + Tigger4(Zombi) DNA MER2_type 228 2731 0 501 244 12 47 chr13 20129662 20129834 -99615064 + L1ME2 LINE L1 4470 4635 -1511 25 83 0 0 chr13 20129847 20129907 -99614991 + AT_rich Low_complexity Low_complexity 1 60 0 1333 262 33 5 chr13 20129933 20130360 -99614538 + L1ME2 LINE L1 4615 5053 -1093 1258 196 4 43 chr13 20130360 20130641 -99614257 + AluSg SINE Alu 39 308 -2 3182 249 51 8 chr13 20130642 20131711 -99613187 + L1ME2 LINE L1 5031 6153 -11 336 312 109 10 chr13 20131906 20132108 -99612790 + MIR SINE MIR 35 256 -6 199 296 45 61 chr13 20132146 20132278 -99612620 + L2 LINE L2 2932 3061 -211 1511 101 0 10 chr13 20132326 20132535 -99612363 - AluY SINE Alu -10 301 95 342 339 8 0 chr13 20185685 20185812 -99559086 - L2 LINE L2 -708 2606 2479 4061 154 112 96 chr13 20186358 20186652 -99558246 - L1MC3 LINE L1 -7 7778 7490 2070 87 0 4 chr13 20186652 20186929 -99557969 - AluY SINE Alu -15 296 21 4061 154 112 96 chr13 20186929 20187213 -99557685 - L1MC3 LINE L1 -295 7490 7212 347 256 0 0 chr13 20187213 20187295 -99557603 - MLT1F1 LTR MaLR -450 117 36 4061 154 112 96 chr13 20187295 20187692 -99557206 - L1MC3 LINE L1 -573 7212 6704 198 319 104 39 chr13 20187845 20188105 -99556793 + L2 LINE L2 2322 2598 -716 966 300 61 34 chr13 20188565 20188705 -99556193 - L2 LINE L2 -4 3309 3174 1042 181 229 3 chr13 20188705 20188997 -99555901 + MER46B DNA MER2_type 4 236 0 966 300 61 34 chr13 20188997 20189266 -99555632 - L2 LINE L2 -139 3174 2889 688 295 182 12 chr13 20189269 20189588 -99555310 - L2 LINE L2 -973 2341 1969 751 313 40 4 chr13 20189615 20189842 -99555056 - MIR SINE MIR -22 240 6 585 316 73 25 chr13 20189837 20190236 -99554662 - L2 LINE L2 -1332 1982 1565 * 192 307 40 0 chr13 20192415 20192490 -99552408 - MIR3 SINE MIR -24 184 107 504 272 92 32 chr13 20192888 20193105 -99551793 - MIR SINE MIR -10 252 23 258 287 0 0 chr13 20194103 20194246 -99550652 + (TA)n Simple_repeat Simple_repeat 1 143 0 2839 154 19 4 chr13 20196415 20196890 -99548008 - L1PB4 LINE L1 0 6156 5675 1176 171 0 33 chr13 20196891 20197102 -99547796 - AluJo SINE Alu -8 304 101 1838 160 6 25 chr13 20197255 20197573 -99547325 + AluJb SINE Alu 1 312 0 2198 120 13 0 chr13 20198920 20199220 -99545678 + AluSc SINE Alu 1 304 -5 2606 193 38 13 chr13 20202859 20203389 -99541509 - MER44D DNA MER2_type 0 605 8 201 311 194 0 chr13 20203419 20203522 -99541376 - MIR SINE MIR -74 188 66 240 282 0 14 chr13 20204287 20204358 -99540540 - MIR SINE MIR -66 142 73 244 241 0 0 chr13 20204391 20204449 -99540449 + T-rich Low_complexity Low_complexity 1 58 0 208 342 49 60 chr13 20205961 20206391 -99538507 - L2 LINE L2 -6 3266 2842 207 273 75 62 chr13 20207773 20207934 -99536964 + MIR SINE MIR 50 212 -50 437 302 47 31 chr13 20208129 20208387 -99536511 + L3 LINE CR1 1315 1576 -1 269 331 50 14 chr13 20208545 20208684 -99536214 - L3 LINE CR1 -2 1575 1432 186 254 36 0 chr13 20210579 20210634 -99534264 - L2 LINE L2 -2 3311 3255 240 175 63 63 chr13 20212614 20212677 -99532221 - MLT1I LTR MaLR -33 376 314 2539 72 0 0 chr13 20213228 20213535 -99531363 - AluY SINE Alu -4 307 1 212 329 127 0 chr13 20214846 20214925 -99529973 + L2 LINE L2 3147 3235 -37 309 165 16 50 chr13 20214972 20215093 -99529805 + GA-rich Low_complexity Low_complexity 4 120 0 187 281 130 75 chr13 20217126 20217511 -99527387 + L2 LINE L2 2572 2977 -337 472 293 213 10 chr13 20217927 20218227 -99526671 + MLT1J LTR MaLR 1 361 -150 356 274 10 0 chr13 20219162 20219264 -99525634 - MIR SINE MIR -112 150 48 1650 188 38 0 chr13 20219854 20220142 -99524756 + AluJb SINE Alu 5 303 -9 1746 118 57 18 chr13 20223192 20223471 -99521427 - AluSx SINE Alu -10 302 13 231 86 0 29 chr13 20224770 20224805 -99520093 - HAL1 LINE L1 -2188 319 286 2706 127 26 5 chr13 20225670 20226089 -99518809 - MSTA LTR MaLR 0 428 1 259 273 0 45 chr13 20227243 20227331 -99517567 + MER112 DNA MER1_type 144 227 -33 1431 219 95 24 chr13 20229625 20229995 -99514903 + MSTD LTR MaLR 1 396 0 6860 239 35 35 chr13 20229999 20231726 -99513172 + MSTD-int LTR MaLR 4 1730 -5 1310 204 139 14 chr13 20231731 20232083 -99512815 + MSTD LTR MaLR 1 396 0 335 169 14 0 chr13 20232257 20232328 -99512570 + CT-rich Low_complexity Low_complexity 1 72 0 189 0 0 0 chr13 20232328 20232349 -99512549 + (TTTCC)n Simple_repeat Simple_repeat 4 24 0 22 35 0 0 chr13 20232370 20232399 -99512499 + AT_rich Low_complexity Low_complexity 1 29 0 411 163 25 0 chr13 20233788 20233868 -99511030 - AluS SINE Alu -1 308 227 282 29 0 0 chr13 20233886 20233921 -99510977 + (TTTG)n Simple_repeat Simple_repeat 1 35 0 2074 110 0 24 chr13 20233921 20234208 -99510690 - AluSx SINE Alu -32 280 1 264 200 20 60 chr13 20234275 20234375 -99510523 - L1MC5 LINE L1 -48 7913 7818 646 75 0 0 chr13 20234595 20234689 -99510209 - AluY SINE Alu -1 310 217 229 343 75 8 chr13 20235585 20235719 -99509179 + MIR SINE MIR 39 181 -81 3345 187 31 26 chr13 20235982 20236698 -99508200 + LTR62 LTR ERVK 1 719 0 214 282 19 58 chr13 20236965 20237068 -99507830 - MIR SINE MIR -94 114 16 211 343 12 4 chr13 20237976 20238093 -99506805 + MIR SINE MIR 37 154 -67 900 259 34 7 chr13 20239461 20239754 -99505144 + L1M4 LINE L1 2950 3250 -2896 1270 189 95 5 chr13 20240773 20241201 -99503697 - LTR54 LTR ERV1 -1 497 1 25 83 0 0 chr13 20242115 20242175 -99502723 + AT_rich Low_complexity Low_complexity 1 60 0 227 79 26 0 chr13 20243693 20243731 -99501167 + (TTTG)n Simple_repeat Simple_repeat 4 42 0 1635 163 13 67 chr13 20243889 20244202 -99500696 + AluJo SINE Alu 13 308 -4 234 323 113 8 chr13 20245459 20245583 -99499315 + MIR SINE MIR 92 228 -34 2104 118 3 3 chr13 20245635 20245931 -99498967 - AluSx SINE Alu -16 296 1 276 255 10 82 chr13 20248086 20248184 -99496714 - MIR SINE MIR -18 244 154 351 113 0 0 chr13 20251621 20251674 -99493224 + (TG)n Simple_repeat Simple_repeat 2 54 0 1560 185 18 14 chr13 20251679 20251960 -99492938 - AluJo SINE Alu -30 282 1 3887 60 2 36 chr13 20252771 20253304 -99491594 - L1PA6 LINE L1 -5 6149 5635 564 249 11 28 chr13 20254117 20254294 -99490604 - MLT1A1 LTR MaLR -15 359 186 1016 173 0 12 chr13 20254309 20254482 -99490416 - FRAM SINE Alu -5 171 1 866 160 0 0 chr13 20254490 20254634 -99490264 - MLT1A1 LTR MaLR -220 145 2 206 328 31 0 chr13 20255273 20255337 -99489561 - L2 LINE L2 -70 3202 3137 344 157 41 27 chr13 20256483 20256630 -99488268 + (CA)n Simple_repeat Simple_repeat 1 149 0 346 211 45 30 chr13 20256641 20256774 -99488124 + (CA)n Simple_repeat Simple_repeat 1 135 0 238 172 35 23 chr13 20256787 20256874 -99488024 + (CA)n Simple_repeat Simple_repeat 1 88 0 875 287 137 45 chr13 20258497 20259030 -99485868 - MLT1G1 LTR MaLR 0 595 14 325 342 9 60 chr13 20259219 20259435 -99485463 - MIR3 SINE MIR -55 207 5 240 300 82 17 chr13 20260728 20260961 -99483937 + L1MEd LINE L1 901 1148 -4971 318 302 20 40 chr13 20261101 20261349 -99483549 + HAL1 LINE L1 1427 1669 -838 180 0 0 0 chr13 20262045 20262065 -99482833 + (TC)n Simple_repeat Simple_repeat 2 21 0 234 0 0 0 chr13 20262074 20262100 -99482798 + (TTTTA)n Simple_repeat Simple_repeat 2 27 0 2363 73 3 0 chr13 20262103 20262391 -99482507 - AluY SINE Alu -22 289 1 324 351 57 16 chr13 20262403 20262648 -99482250 - L1ME LINE L1 -346 5816 5562 295 301 95 73 chr13 20265672 20266084 -99478814 - L2 LINE L2 -8 3264 2844 26 0 0 0 chr13 20266548 20266574 -99478324 + AT_rich Low_complexity Low_complexity 1 26 0 742 185 64 0 chr13 20266575 20266748 -99478150 - L1MA9 LINE L1 -46 6266 6083 1469 236 87 8 chr13 20266933 20267619 -99477279 + L1ME1 LINE L1 5002 5740 -426 509 244 88 42 chr13 20267714 20267952 -99476946 + L1ME1 LINE L1 5913 6161 -5 332 293 143 7 chr13 20268246 20268393 -99476505 - MIR SINE MIR -3 259 93 1496 274 16 16 chr13 20268664 20269179 -99475719 - L1ME1 LINE L1 -20 6146 5632 524 233 131 64 chr13 20269190 20269753 -99475145 - L1ME LINE L1 -5049 1034 459 234 111 19 56 chr13 20269894 20269948 -99474950 - L1ME LINE L1 -5685 385 334 202 205 26 0 chr13 20270070 20270109 -99474789 + GA-rich Low_complexity Low_complexity 1 40 0 22 0 0 0 chr13 20270910 20270932 -99473966 + AT_rich Low_complexity Low_complexity 1 22 0 678 329 49 23 chr13 20271783 20272087 -99472811 - L2 LINE L2 -4 3309 2998 253 212 96 111 chr13 20272601 20272799 -99472099 - MLT1J LTR MaLR -193 318 124 1327 227 79 67 chr13 20272840 20273374 -99471524 + MLT1F1 LTR MaLR 3 567 0 441 256 140 43 chr13 20274272 20274396 -99470502 - MIR SINE MIR -16 246 135 2166 121 7 7 chr13 20274396 20274703 -99470195 + AluSq SINE Alu 1 307 -6 441 256 140 43 chr13 20274703 20274785 -99470113 - MIR SINE MIR -127 135 20 553 309 45 22 chr13 20275899 20276122 -99468776 + MIR SINE MIR 35 262 0 323 381 23 23 chr13 20276135 20276308 -99468590 - MIR SINE MIR -71 191 19 23 0 0 0 chr13 20276366 20276389 -99468509 + AT_rich Low_complexity Low_complexity 1 23 0 613 348 163 12 chr13 20277085 20277669 -99467229 - L3 LINE CR1 -5 1572 901 358 117 0 39 chr13 20277711 20277788 -99467110 + (TCCCC)n Simple_repeat Simple_repeat 5 78 0 192 305 136 24 chr13 20277789 20278002 -99466896 - L3 LINE CR1 -701 876 640 609 291 110 89 chr13 20278557 20279247 -99465651 + HAL1 LINE L1 897 1608 -899 2293 93 0 7 chr13 20279247 20279547 -99465351 - AluSx SINE Alu -14 298 1 609 291 110 89 chr13 20279547 20279663 -99465235 + HAL1 LINE L1 1608 1720 -787 265 279 158 36 chr13 20280335 20280665 -99464233 + L1M4 LINE L1 2650 3019 -3127 541 352 109 28 chr13 20280698 20281201 -99463697 - L3 LINE CR1 -881 696 153 180 0 0 0 chr13 20281318 20281338 -99463560 + (T)n Simple_repeat Simple_repeat 1 20 0 231 302 73 10 chr13 20281609 20281705 -99463193 - L2 LINE L2 -34 3279 3178 2273 105 26 0 chr13 20284676 20284980 -99459918 + AluSx SINE Alu 1 312 0 335 298 19 10 chr13 20285722 20285826 -99459072 - MER5B DNA MER1_type -73 105 1 2253 186 21 5 chr13 20286570 20286989 -99457909 - MSTB LTR MaLR 0 426 1 514 311 45 70 chr13 20288085 20288533 -99456365 + L1M4 LINE L1 2853 3289 -2857 205 75 50 0 chr13 20289866 20289906 -99454992 + GA-rich Low_complexity Low_complexity 2 43 0 450 0 0 0 chr13 20289910 20289960 -99454938 + (TG)n Simple_repeat Simple_repeat 2 51 0 414 0 0 0 chr13 20290522 20290568 -99454330 + (CA)n Simple_repeat Simple_repeat 2 47 0 247 111 0 0 chr13 20290586 20290622 -99454276 + MLT2C2 LTR ERVL 429 464 0 2134 207 32 22 chr13 20290622 20291159 -99453739 - L1MB7 LINE L1 -256 6164 5623 * 4877 241 87 39 chr13 20291157 20291509 -99453389 - L1MB7 LINE L1 -2002 4380 4046 1543 203 3 20 chr13 20291509 20291804 -99453094 + AluJo SINE Alu 1 290 -22 4877 241 87 39 chr13 20291804 20295453 -99449445 - L1MB7 LINE L1 -2336 4046 68 405 0 0 0 chr13 20295453 20295498 -99449400 + (TG)n Simple_repeat Simple_repeat 2 46 0 4877 241 87 39 chr13 20295498 20295568 -99449330 - L1MB7 LINE L1 -6314 68 3 202 259 17 0 chr13 20297145 20297203 -99447695 + (TA)n Simple_repeat Simple_repeat 1 59 0 210 347 0 16 chr13 20298260 20298381 -99446517 + CT-rich Low_complexity Low_complexity 4 122 0 1085 207 95 0 chr13 20298761 20299015 -99445883 - MER110 LTR ERV1 -172 319 1 1257 246 163 20 chr13 20299813 20300219 -99444679 + L3 LINE CR1 1111 1574 -3 4390 187 48 14 chr13 20300570 20301468 -99443430 - L1MA7 LINE L1 -32 6259 5332 241 296 65 19 chr13 20301546 20301654 -99443244 + L2 LINE L2 3099 3211 -61 897 214 67 0 chr13 20303178 20303379 -99441519 + AluJo SINE Alu 96 308 0 219 184 0 41 chr13 20303972 20304021 -99440877 + CT-rich Low_complexity Low_complexity 4 50 0 21 0 0 0 chr13 20304370 20304391 -99440507 + AT_rich Low_complexity Low_complexity 1 21 0 422 296 122 13 chr13 20305610 20305840 -99439058 + MIR SINE MIR 7 261 -1 186 353 50 34 chr13 20305864 20305983 -99438915 - L2 LINE L2 -193 3079 2959 1196 305 117 54 chr13 20306062 20307212 -99437686 - L2 LINE L2 -444 2870 1611 345 47 0 0 chr13 20307212 20307255 -99437643 + (TG)n Simple_repeat Simple_repeat 2 44 0 1196 305 117 54 chr13 20307255 20307529 -99437369 - L2 LINE L2 -1703 1611 1356 590 262 43 0 chr13 20307562 20307726 -99437172 - MIR SINE MIR -3 259 89 2830 236 85 29 chr13 20308099 20308306 -99436592 - L1ME1 LINE L1 -5 6161 5967 1922 198 3 40 chr13 20308306 20308685 -99436213 - MLT1A1 LTR MaLR 0 365 1 2830 236 85 29 chr13 20308685 20310203 -99434695 - L1ME1 LINE L1 -199 5967 4358 * 3031 186 43 9 chr13 20310187 20310831 -99434067 - L1MC3 LINE L1 0 7785 7120 284 213 11 43 chr13 20310878 20310972 -99433926 + (CATA)n Simple_repeat Simple_repeat 2 92 0 2987 85 28 5 chr13 20310975 20311375 -99433523 - MLT2A2 LTR ERVL -44 409 1 8573 186 44 35 chr13 20311375 20312375 -99432523 - L1MC3 LINE L1 -660 7125 6099 3244 133 54 4 chr13 20312375 20312879 -99432019 - L1PB1 LINE L1 -3 6148 5620 8573 186 44 35 chr13 20312879 20313733 -99431165 - L1MC3 LINE L1 -1686 6099 5254 9333 35 10 3 chr13 20313780 20315631 -99429267 - L1PA3 LINE L1 -2 6153 4293 331 322 119 30 chr13 20317089 20317291 -99427607 - MIR SINE MIR -33 229 10 205 371 36 29 chr13 20317318 20317458 -99427440 + MER91A DNA MER1_type 1 141 -55 24 0 0 0 chr13 20319490 20319514 -99425384 + AT_rich Low_complexity Low_complexity 1 24 0 235 242 150 105 chr13 20321820 20321927 -99422971 - MER5B DNA MER1_type -17 161 43 2504 54 0 0 chr13 20321927 20322223 -99422675 + AluY SINE Alu 1 296 -15 235 242 150 105 chr13 20322223 20322268 -99422630 - MER5B DNA MER1_type -135 43 2 504 232 87 53 chr13 20323216 20323423 -99421475 - MLT1K LTR MaLR -9 579 366 374 169 0 0 chr13 20325222 20325287 -99419611 + Alu SINE Alu 235 299 -3 503 248 24 8 chr13 20325946 20326071 -99418827 - Charlie4 DNA MER1_type -12 1949 1823 385 273 76 35 chr13 20326146 20326344 -99418554 - LTR33 LTR ERVL -1 520 315 23 33 0 0 chr13 20327046 20327076 -99417822 + AT_rich Low_complexity Low_complexity 1 30 0 883 207 35 101 chr13 20329159 20329526 -99415372 - LTR37A LTR ERV1 0 426 84 239 305 17 44 chr13 20329664 20329835 -99415063 - MIR SINE MIR -21 241 3 23 0 0 0 chr13 20330154 20330177 -99414721 + AT_rich Low_complexity Low_complexity 1 23 0 627 211 57 51 chr13 20331164 20331339 -99413559 - MER63A DNA MER1_type -33 177 2 229 257 0 43 chr13 20331346 20331416 -99413482 + L2 LINE L2 3247 3313 0 232 253 172 20 chr13 20331601 20331700 -99413198 - MIR SINE MIR -112 150 37 180 258 45 30 chr13 20333581 20333647 -99411251 - L2 LINE L2 -1046 2268 2202 2096 152 35 11 chr13 20334388 20334763 -99410135 - MLT1B LTR MaLR 0 390 7 663 315 104 41 chr13 20335471 20335934 -99408964 - MLT1J LTR MaLR 0 511 20 2399 176 94 4 chr13 20336903 20337415 -99407483 + MER74A LTR ERVL 1 558 0 233 264 110 22 chr13 20337415 20337506 -99407392 + L2 LINE L2 3212 3310 -3 2211 100 10 0 chr13 20337907 20338019 -99406879 + AluSg SINE Alu 13 122 -188 243 0 0 0 chr13 20338019 20338046 -99406852 + (CA)n Simple_repeat Simple_repeat 2 28 0 2211 100 10 0 chr13 20338046 20338223 -99406675 + AluSg SINE Alu 122 305 -5 350 286 43 31 chr13 20340530 20340691 -99404207 - L3 LINE CR1 -35 1542 1380 494 317 81 52 chr13 20340795 20341180 -99403718 - L3 LINE CR1 -262 1315 920 2092 125 10 0 chr13 20341450 20341745 -99403153 + AluSx SINE Alu 1 298 -14 2488 69 0 19 chr13 20343878 20344195 -99400703 + AluY SINE Alu 1 311 0 209 238 16 16 chr13 20344210 20344273 -99400625 + (TGAA)n Simple_repeat Simple_repeat 1 63 0 219 125 0 0 chr13 20344637 20344677 -99400221 + (TTAGGG)n Simple_repeat Simple_repeat 1 40 0 884 206 111 16 chr13 20344735 20344988 -99399910 - MER58B DNA MER1_type -9 332 56 2267 103 0 16 chr13 20345194 20345504 -99399394 - AluSg SINE Alu -5 305 1 2180 104 24 7 chr13 20345514 20345811 -99399087 - AluSg SINE Alu -8 302 1 311 350 51 10 chr13 20400808 20401005 -99343893 + L3 LINE CR1 685 889 -688 2144 116 0 3 chr13 20401027 20401336 -99343562 + AluSx SINE Alu 1 308 0 379 179 0 48 chr13 20401550 20401634 -99343264 - MIR SINE MIR -115 147 68 423 238 12 133 chr13 20401784 20401822 -99343076 + MIR SINE MIR 19 60 -202 2702 157 0 0 chr13 20401822 20402223 -99342675 + MER57A LTR ERV1 3 403 0 423 238 12 133 chr13 20402223 20402424 -99342474 + MIR SINE MIR 60 229 -33 432 284 112 0 chr13 20402913 20403029 -99341869 - L2 LINE L2 0 3272 3144 184 288 68 17 chr13 20403552 20403611 -99341287 + MER5B DNA MER1_type 80 141 -37 198 344 0 0 chr13 20406351 20406415 -99338483 + L2 LINE L2 3250 3313 0 338 264 181 28 chr13 20406870 20407014 -99337884 - MER5A DNA MER1_type 0 189 24 1676 166 32 32 chr13 20407075 20407383 -99337515 - AluJo SINE Alu 0 312 5 852 194 0 0 chr13 20409625 20409853 -99335045 + (TCCA)n Simple_repeat Simple_repeat 1 228 0 1804 143 0 21 chr13 20411002 20411282 -99333616 + AluJb SINE Alu 9 282 -30 368 276 72 72 chr13 20412318 20412499 -99332399 - MIR SINE MIR -56 206 26 258 32 0 0 chr13 20414031 20414062 -99330836 + (GAAA)n Simple_repeat Simple_repeat 2 32 0 396 59 0 0 chr13 20414801 20414852 -99330046 + (TG)n Simple_repeat Simple_repeat 1 51 0 203 309 229 29 chr13 20415859 20416034 -99328864 - MIR SINE MIR -7 255 46 224 293 0 0 chr13 20416676 20416734 -99328164 - L2 LINE L2 -97 3216 3159 390 234 0 0 chr13 20416793 20416947 -99327951 + (TG)n Simple_repeat Simple_repeat 1 154 0 819 196 68 0 chr13 20417086 20417249 -99327649 + MIR SINE MIR 67 240 -22 249 36 0 0 chr13 20417966 20417994 -99326904 - LTR1 LTR ERV1 0 785 758 490 248 16 31 chr13 20418041 20418170 -99326728 - HUERS-P2 LTR ERV1 -2961 127 1 3781 121 65 67 chr13 20418170 20418945 -99325953 - LTR1 LTR ERV1 0 785 13 601 205 6 99 chr13 20419694 20419865 -99325033 + MER63 DNA MER1_type 1 781 -281 666 103 45 13 chr13 20420038 20420194 -99324704 + (TCCA)n Simple_repeat Simple_repeat 3 163 0 201 270 124 0 chr13 20420195 20420284 -99324614 + MIR3 SINE MIR 103 202 -6 501 275 84 0 chr13 20420364 20420542 -99324356 + L2 LINE L2 3112 3304 -9 389 349 23 0 chr13 20420558 20420687 -99324211 - MIR3 SINE MIR -62 146 15 223 317 108 36 chr13 20421059 20421226 -99323672 - L2 LINE L2 -24 3289 3111 549 192 144 0 chr13 20422993 20423118 -99321780 + LTR54B LTR ERV1 1 143 -355 1230 149 18 18 chr13 20423145 20423367 -99321531 + LTR54 LTR ERV1 289 510 0 464 129 26 17 chr13 20424077 20424193 -99320705 + (TCTA)n Simple_repeat Simple_repeat 3 119 0 457 176 0 0 chr13 20424195 20424280 -99320618 + (TATG)n Simple_repeat Simple_repeat 2 86 0 267 271 14 0 chr13 20424719 20424789 -99320109 + L2 LINE L2 3240 3310 -3 736 261 14 21 chr13 20424888 20425220 -99319678 - MLT1A2 LTR MaLR 0 374 1 306 339 43 0 chr13 20425994 20426109 -99318789 - MER91C DNA MER1_type 0 140 21 708 316 95 17 chr13 20426329 20426801 -99318097 + LTR33 LTR ERVL 13 521 0 195 263 0 0 chr13 20427093 20427131 -99317767 + L2 LINE L2 3184 3221 -92 1346 146 175 5 chr13 20427680 20428088 -99316810 + MER44D DNA MER2_type 1 536 -69 1986 204 123 82 chr13 20428090 20428805 -99316093 + LTR1B LTR ERV1 2 745 -81 536 100 0 50 chr13 20428890 20428970 -99315928 + MER44D DNA MER2_type 530 605 0 623 268 127 53 chr13 20429117 20429662 -99315236 - L1MC4 LINE L1 -1 8041 7457 2368 85 7 0 chr13 20430445 20430752 -99314146 - AluY SINE Alu -2 309 1 403 234 82 68 chr13 20430807 20431236 -99313662 + MER52A LTR ERV1 1 572 -706 1771 135 4 29 chr13 20431400 20431681 -99313217 - AluSx SINE Alu -38 274 1 189 0 0 0 chr13 20432959 20432980 -99311918 + (A)n Simple_repeat Simple_repeat 1 21 0 319 333 94 17 chr13 20433557 20433737 -99311161 + MIR SINE MIR 4 197 -65 306 73 0 0 chr13 20433775 20433816 -99311082 + (CAT)n Simple_repeat Simple_repeat 2 42 0 2010 94 72 0 chr13 20433819 20434084 -99310814 - AluSx SINE Alu -28 284 1 22 0 0 0 chr13 20434084 20434106 -99310792 + AT_rich Low_complexity Low_complexity 1 22 0 295 117 11 43 chr13 20434316 20434410 -99310488 + (TA)n Simple_repeat Simple_repeat 2 92 0 612 285 21 0 chr13 20435484 20435719 -99309179 - L1MDa LINE L1 -2971 3569 3330 10445 215 58 20 chr13 20435820 20438607 -99306291 - L1MDa LINE L1 -3630 2910 17 341 278 46 0 chr13 20438812 20438920 -99305978 - MIR SINE MIR -71 191 79 1252 264 71 23 chr13 20439145 20439584 -99305314 + LTR40c LTR ERVL 1 460 -5 291 28 0 0 chr13 20439936 20439972 -99304926 + (T)n Simple_repeat Simple_repeat 1 36 0 200 122 0 24 chr13 20440760 20440801 -99304097 + (TG)n Simple_repeat Simple_repeat 1 40 0 2331 90 0 13 chr13 20441869 20442179 -99302719 + AluY SINE Alu 1 306 -5 23 0 0 0 chr13 20442844 20442867 -99302031 + AT_rich Low_complexity Low_complexity 1 23 0 207 0 0 0 chr13 20443247 20443270 -99301628 + (TA)n Simple_repeat Simple_repeat 1 23 0 191 245 0 41 chr13 20443876 20443925 -99300973 - L2 LINE L2 -16 3256 3210 292 250 0 0 chr13 20445090 20445150 -99299748 - L2 LINE L2 0 3313 3254 30 0 0 0 chr13 20445249 20445279 -99299619 + AT_rich Low_complexity Low_complexity 1 30 0 22 80 0 0 chr13 20445398 20445448 -99299450 + AT_rich Low_complexity Low_complexity 1 50 0 728 209 0 7 chr13 20445557 20445710 -99299188 - MLT1A1 LTR MaLR -213 152 1 584 296 21 34 chr13 20445869 20446102 -99298796 + MLT1J1 LTR MaLR 206 435 -11 1235 255 77 17 chr13 20446364 20446619 -99298279 - MLT1C LTR MaLR 0 467 178 378 0 0 0 chr13 20446619 20446661 -99298237 + (TG)n Simple_repeat Simple_repeat 2 43 0 1235 255 77 17 chr13 20446661 20446809 -99298089 - MLT1C LTR MaLR -289 178 40 238 203 0 17 chr13 20447421 20447480 -99297418 + MLT1J2 LTR MaLR 369 426 -24 289 285 115 33 chr13 20447512 20447624 -99297274 - L1ME LINE L1 -336 5785 5684 1786 104 4 4 chr13 20447624 20447864 -99297034 - AluSg/x SINE Alu 0 312 73 * 2346 74 0 17 chr13 20447862 20448161 -99296737 - AluY SINE Alu -17 294 1 289 285 115 33 chr13 20448161 20448319 -99296579 - L1ME LINE L1 -734 5387 5494 642 335 97 36 chr13 20448380 20448989 -99295909 + L2 LINE L2 1784 2429 -885 1134 260 142 21 chr13 20449054 20449520 -99295378 + MLT1E LTR MaLR 72 593 0 2139 118 3 22 chr13 20451015 20451329 -99293569 - AluSx SINE Alu -4 308 1 647 233 39 24 chr13 20451472 20451678 -99293220 + MER3 DNA MER1_type 1 209 0 181 229 0 0 chr13 20451785 20451820 -99293078 - L2 LINE L2 -20 3293 3259 390 74 0 0 chr13 20453374 20453428 -99291470 + (TTCC)n Simple_repeat Simple_repeat 3 56 0 646 209 43 6 chr13 20454898 20455061 -99289837 + MER5A DNA MER1_type 3 171 -18 321 343 70 29 chr13 20455057 20455229 -99289669 + MIR SINE MIR 63 241 -21 * 297 258 258 0 chr13 20455809 20455898 -99289000 + MER5A DNA MER1_type 49 160 -29 207 291 70 57 chr13 20456768 20456926 -99287972 + MIR SINE MIR 93 252 -10 798 215 97 45 chr13 20458780 20459068 -99285830 + L1MDb LINE L1 43 345 -6064 304 327 60 33 chr13 20459331 20459750 -99285148 + L1M4 LINE L1 3786 4215 -1931 272 248 88 9 chr13 20459944 20459957 -99284941 - L1M4 LINE L1 -1302 4844 4833 2398 84 3 0 chr13 20459957 20460255 -99284643 - AluY SINE Alu -12 299 1 272 248 88 9 chr13 20460255 20460354 -99284544 - L1M4 LINE L1 -1313 4833 4723 23 33 0 0 chr13 20460724 20460754 -99284144 + AT_rich Low_complexity Low_complexity 1 30 0 535 183 148 0 chr13 20461239 20461354 -99283544 - FLAM_A SINE Alu -1 132 1 2314 202 127 33 chr13 20461503 20462346 -99282552 - MER69 DNA AcHobo -49 2477 1556 462 307 76 71 chr13 20462347 20462662 -99282236 + L2 LINE L2 2687 3010 -303 1372 191 25 86 chr13 20462662 20462986 -99281912 - AluJo SINE Alu -8 304 1 462 307 76 71 chr13 20462986 20463250 -99281648 + L2 LINE L2 3010 3271 -42 278 293 35 9 chr13 20463345 20463461 -99281437 - MER103 DNA DNA -45 121 3 549 350 120 19 chr13 20463641 20464067 -99280831 - L2 LINE L2 0 3272 2804 23 33 0 0 chr13 20465196 20465226 -99279672 + AT_rich Low_complexity Low_complexity 1 30 0 476 150 20 30 chr13 20465235 20465335 -99279563 - L1MA5 LINE L1 -2 6298 6200 231 356 58 19 chr13 20466184 20466211 -99278687 + L2 LINE L2 3154 3178 -94 2390 126 22 0 chr13 20466211 20466567 -99278331 - THE1B LTR MaLR 0 364 1 231 356 58 19 chr13 20466567 20466643 -99278255 + L2 LINE L2 3178 3261 -11 942 280 59 42 chr13 20466662 20467133 -99277765 - LTR16C LTR ERVL -9 482 4 3567 243 29 28 chr13 20467239 20468361 -99276537 - L1M4 LINE L1 -1209 4937 3814 3453 189 18 49 chr13 20468361 20469052 -99275846 + L1MB5 LINE L1 5160 5821 -353 2404 78 0 13 chr13 20469052 20469361 -99275537 + AluY SINE Alu 1 305 -6 3453 189 18 49 chr13 20469361 20469657 -99275241 + L1MB5 LINE L1 5821 6125 -49 309 260 75 12 chr13 20471080 20471253 -99273645 - L1ME4a LINE L1 -98 6023 5840 21 0 0 0 chr13 20471296 20471317 -99273581 + AT_rich Low_complexity Low_complexity 1 21 0 237 240 13 0 chr13 20471497 20471572 -99273326 - L1M4 LINE L1 -3959 2187 2112 1240 153 0 0 chr13 20471707 20471910 -99272988 - L1PA13 LINE L1 -3 6160 5958 2358 169 46 26 chr13 20472179 20472677 -99272221 - L1MC1 LINE L1 -6 6327 5820 1811 152 34 9 chr13 20472685 20473008 -99271890 - L1MC1 LINE L1 -562 5771 5441 948 202 23 43 chr13 20473010 20473267 -99271631 + MSTD LTR MaLR 145 396 0 290 289 13 13 chr13 20474068 20474144 -99270754 - MIR SINE MIR -159 103 28 2440 69 0 28 chr13 20476105 20476422 -99268476 - AluY SINE Alu -3 308 1 298 243 56 56 chr13 20477985 20478092 -99266806 - L2 LINE L2 0 3313 3207 843 202 10 30 chr13 20478230 20478433 -99266465 - MER3 DNA MER1_type -9 200 2 638 280 69 13 chr13 20478771 20479003 -99265895 - L2 LINE L2 -1 3312 3068 1412 259 120 30 chr13 20479003 20479551 -99265347 - L1MEc LINE L1 -3706 2509 2012 1801 103 118 8 chr13 20479551 20479813 -99265085 - AluSg1 SINE Alu -18 291 1 1412 259 120 30 chr13 20479813 20480365 -99264533 - L1MEc LINE L1 -4203 2012 1511 2583 123 5 0 chr13 20480365 20480738 -99264160 - THE1C LTR MaLR 0 375 1 10221 115 45 3 chr13 20480738 20482254 -99262644 - THE1C-int LTR MaLR 0 1580 1 2631 106 3 13 chr13 20482255 20482633 -99262265 - THE1C LTR MaLR -1 374 1 1412 259 120 30 chr13 20482633 20482696 -99262202 - L1MEc LINE L1 -4703 1512 1283 1552 188 14 17 chr13 20482696 20482988 -99261910 + AluJb SINE Alu 1 291 -21 574 304 80 30 chr13 20483131 20483496 -99261402 - L2 LINE L2 -824 2490 2108 2093 249 37 22 chr13 20483661 20483738 -99261160 - L1M4 LINE L1 -1816 4828 4754 192 77 0 0 chr13 20483738 20483764 -99261134 + (TG)n Simple_repeat Simple_repeat 2 27 0 2093 249 37 22 chr13 20483764 20484440 -99260458 - L1M4 LINE L1 -1890 4754 4064 1144 204 84 62 chr13 20484440 20484843 -99260055 - MLT1C LTR MaLR 0 467 56 519 273 32 16 chr13 20484886 20485135 -99259763 - L1M4 LINE L1 -2575 4069 3817 * 6242 70 6 30 chr13 20485105 20486017 -99258881 - L1PA7 LINE L1 -3 6649 5760 648 239 44 0 chr13 20486011 20486191 -99258707 - L1M4 LINE L1 -6353 189 2 * 283 370 0 16 chr13 20486758 20486885 -99258013 - MIR3 SINE MIR -6 202 78 290 230 103 23 chr13 20487208 20487295 -99257603 - L2 LINE L2 -10 3262 3169 188 214 71 0 chr13 20487783 20487825 -99257073 - L2 LINE L2 -2 3311 3267 1255 202 77 36 chr13 20489273 20489664 -99255234 + MLT1C LTR MaLR 60 466 -1 477 260 3 39 chr13 20490610 20490940 -99253958 + CT-rich Low_complexity Low_complexity 1 318 0 7027 54 22 0 chr13 20491056 20491986 -99252912 - L1PA7 LINE L1 -4 6150 5215 12493 130 8 27 chr13 20491986 20495059 -99249839 - L1P3 LINE L1 -3393 3068 12 21 36 0 0 chr13 20495060 20495088 -99249810 + AT_rich Low_complexity Low_complexity 1 28 0 515 100 11 11 chr13 20496934 20497024 -99247874 - L1MB8 LINE L1 0 6178 6089 3356 175 45 7 chr13 20497039 20497748 -99247150 - L1MB4 LINE L1 -6 6174 5439 217 237 129 21 chr13 20497964 20498057 -99246841 + MIR SINE MIR 150 252 -10 2368 72 7 3 chr13 20499942 20500234 -99244664 + AluSq SINE Alu 1 293 -20 1216 126 37 0 chr13 20500287 20500477 -99244421 + MER30 DNA MER1_type 1 197 -33 914 231 114 70 chr13 20502574 20503003 -99241895 + LTR37B LTR ERV1 21 468 0 38 39 0 0 chr13 20503304 20503356 -99241542 + AT_rich Low_complexity Low_complexity 1 52 0 238 329 14 0 chr13 20503503 20503576 -99241322 - L2 LINE L2 -206 3066 2993 320 161 81 0 chr13 20504764 20504778 -99240120 - MER46A DNA MER2_type -73 163 145 13965 142 19 107 chr13 20504778 20507113 -99237785 + Tigger4(Zombi) DNA MER2_type 1 2016 -715 2538 20 20 0 chr13 20507113 20507414 -99237484 + L1PA2 LINE L1 5846 6155 0 13965 142 19 107 chr13 20507414 20508072 -99236826 + Tigger4(Zombi) DNA MER2_type 2016 2730 -1 755 163 7 7 chr13 20508230 20508365 -99236533 + Tigger4(Zombi) DNA MER2_type 1803 1937 -794 333 321 52 33 chr13 20508401 20508613 -99236285 + L1MEc LINE L1 1304 1519 -4877 335 219 30 116 chr13 20508910 20509074 -99235824 + L1MEc LINE L1 2217 2366 -3849 405 204 176 19 chr13 20509112 20509220 -99235678 - L2 LINE L2 -2 3311 3187 403 319 95 51 chr13 20509393 20509782 -99235116 - LTR33 LTR ERVL -11 510 105 316 285 68 82 chr13 20509854 20510135 -99234763 + L1MEc LINE L1 3062 3338 -2877 692 347 34 9 chr13 20510405 20510728 -99234170 + MLT1J LTR MaLR 71 401 -110 1867 121 0 4 chr13 20511242 20511498 -99233400 + AluSx SINE Alu 35 289 -23 499 313 72 24 chr13 20511650 20511985 -99232913 + L1MEc LINE L1 118 468 -5928 * 1725 268 44 40 chr13 20511970 20512968 -99231930 + L1MEc LINE L1 2545 3546 -2669 862 237 68 22 chr13 20512973 20513251 -99231647 - L1MB8 LINE L1 0 6178 5888 2653 201 22 30 chr13 20513254 20514170 -99230728 - L1MB8 LINE L1 -428 5756 4854 2018 107 0 58 chr13 20514170 20514480 -99230418 + AluSx SINE Alu 1 292 -20 2653 201 22 30 chr13 20514480 20514673 -99230225 - L1MB8 LINE L1 -1330 4854 4661 4353 195 70 6 chr13 20514673 20515515 -99229383 - MER54A LTR ERVL -5 896 1 336 152 45 125 chr13 20515521 20515633 -99229265 - L1MB8 LINE L1 -1482 4664 4562 2053 149 97 20 chr13 20515635 20516025 -99228873 + MSTA LTR MaLR 9 428 0 8240 188 43 24 chr13 20516025 20516494 -99228404 + MSTA-int LTR MaLR 1 460 -1191 2789 22 0 0 chr13 20516494 20516805 -99228093 + AluYa5 SINE Alu 1 311 0 8240 188 43 24 chr13 20516805 20517956 -99226942 + MSTA-int LTR MaLR 460 1651 0 2169 134 84 22 chr13 20517956 20518359 -99226539 + MSTA LTR MaLR 1 428 0 1815 237 18 27 chr13 20518359 20518908 -99225990 - L1MB8 LINE L1 -1582 4564 4021 213 39 0 0 chr13 20518913 20518939 -99225959 + (TG)n Simple_repeat Simple_repeat 2 27 0 10300 159 9 3 chr13 20518974 20520971 -99223927 + L1P4 LINE L1 3511 5515 -653 883 214 0 6 chr13 20520982 20521155 -99223743 - AluJb SINE Alu -25 287 116 1497 196 58 58 chr13 20521155 20521583 -99223315 + L1ME1 LINE L1 5510 6079 -255 2799 19 0 0 chr13 20521583 20521893 -99223005 + AluYa5 SINE Alu 1 310 -1 1497 196 58 58 chr13 20521893 20522140 -99222758 + L1ME1 LINE L1 6079 6325 -9 1356 229 38 24 chr13 20522144 20522484 -99222414 + MLT1A1 LTR MaLR 3 347 -18 522 271 21 0 chr13 20522558 20522746 -99222152 + L1ME1 LINE L1 2189 2380 -3766 1037 184 68 138 chr13 20522746 20523143 -99221755 - LOR1a LTR ERV1 -13 484 116 2035 284 65 12 chr13 20523174 20524229 -99220669 + L1ME1 LINE L1 2375 3485 -2661 43168 48 5 0 chr13 20524244 20530369 -99214529 + L1PA4 LINE L1 4 6155 0 3279 260 115 24 chr13 20530384 20530642 -99214256 + L1ME1 LINE L1 3497 3730 -2436 2200 79 4 0 chr13 20530642 20530920 -99213978 + AluY SINE Alu 19 297 -14 3279 260 115 24 chr13 20530920 20533093 -99211805 + L1ME1 LINE L1 3730 6131 -35 2154 75 11 4 chr13 20533562 20533872 -99211026 + AluY SINE Alu 1 312 0 23 0 0 0 chr13 20534732 20534755 -99210143 + AT_rich Low_complexity Low_complexity 1 23 0 1441 149 52 45 chr13 20534883 20535192 -99209706 - L1MA9 LINE L1 -5 6307 5997 28 0 0 0 chr13 20535696 20535724 -99209174 + AT_rich Low_complexity Low_complexity 1 28 0 21 36 0 0 chr13 20536381 20536409 -99208489 + AT_rich Low_complexity Low_complexity 1 28 0 2411 65 3 0 chr13 20536409 20536701 -99208197 + AluSp SINE Alu 1 293 -20 8184 169 24 51 chr13 20536704 20539244 -99205654 - L1MA4 LINE L1 -8 6292 3827 5936 23 0 0 chr13 20539244 20539931 -99204967 - L1PA2 LINE L1 -2 6153 5467 8184 169 24 51 chr13 20539931 20540204 -99204694 - L1MA4 LINE L1 -2473 3827 3548 10241 181 16 2 chr13 20540214 20542933 -99201965 + L1PA13 LINE L1 3428 6163 0 5365 166 45 16 chr13 20542933 20543442 -99201456 + L1MA5 LINE L1 4325 4818 -1482 1119 169 29 14 chr13 20543442 20543649 -99201249 - MER6B DNA MER2_type 0 210 1 5365 166 45 16 chr13 20543649 20545058 -99199840 + L1MA5 LINE L1 4818 6299 -1 25 31 0 0 chr13 20545213 20545245 -99199653 + AT_rich Low_complexity Low_complexity 1 32 0 228 35 0 0 chr13 20546052 20546081 -99198817 + (TG)n Simple_repeat Simple_repeat 2 30 0 231 88 0 0 chr13 20546946 20546980 -99197918 + (TTTTG)n Simple_repeat Simple_repeat 3 36 0 4146 129 9 5 chr13 20547169 20547819 -99197079 - MER39B LTR ERV1 0 653 1 1015 211 106 116 chr13 20547893 20548489 -99196409 + LTR49 LTR ERV1 5 594 -1 2044 161 36 28 chr13 20549370 20549730 -99195168 - THE1B LTR MaLR -1 363 1 11175 107 14 0 chr13 20549730 20551289 -99193609 - THE1B-int LTR MaLR 0 1580 1 2177 138 33 25 chr13 20551289 20551650 -99193248 - THE1B LTR MaLR 0 364 1 32 0 0 0 chr13 20551715 20551747 -99193151 + AT_rich Low_complexity Low_complexity 1 32 0 733 204 41 0 chr13 20552220 20552367 -99192531 + MLT1J2 LTR MaLR 16 168 -282 492 251 32 70 chr13 20552406 20552593 -99192305 + MLT1J2 LTR MaLR 245 424 -26 24 53 0 0 chr13 20553959 20553997 -99190901 + AT_rich Low_complexity Low_complexity 1 38 0 21 0 0 0 chr13 20554639 20554660 -99190238 + AT_rich Low_complexity Low_complexity 1 21 0 414 0 0 0 chr13 20555024 20555070 -99189828 + (TG)n Simple_repeat Simple_repeat 2 47 0 309 290 74 79 chr13 20556128 20556507 -99188391 + L1MDa LINE L1 1039 1415 -5125 1608 299 176 18 chr13 20556519 20557291 -99187607 + L1M4b LINE L1 374 1267 -5592 1544 190 83 21 chr13 20557299 20557672 -99187226 + MSTD LTR MaLR 1 396 0 312 27 0 0 chr13 20557908 20557945 -99186953 + (TTA)n Simple_repeat Simple_repeat 3 39 0 14588 32 1 1 chr13 20557945 20560442 -99184456 - L1PA4 LINE L1 -18 6137 3636 2274 77 7 0 chr13 20562481 20562768 -99182130 + AluSp SINE Alu 14 302 -11 2650 42 0 0 chr13 20563086 20563392 -99181506 - AluY SINE Alu -5 306 1 232 259 19 0 chr13 20563435 20563543 -99181355 + (TA)n Simple_repeat Simple_repeat 1 110 0 262 336 118 50 chr13 20563775 20564132 -99180766 - L2 LINE L2 -12 3301 2921 582 254 57 89 chr13 20564873 20565366 -99179532 + MLT1H LTR MaLR 39 595 0 425 131 12 0 chr13 20566031 20566115 -99178783 + CT-rich Low_complexity Low_complexity 2 86 0 584 347 98 23 chr13 20566155 20566593 -99178305 + L3 LINE CR1 916 1386 -191 21 0 0 0 chr13 20567231 20567252 -99177646 + AT_rich Low_complexity Low_complexity 1 21 0 585 287 35 17 chr13 20569251 20569425 -99175473 + MIR SINE MIR 36 212 -50 491 266 167 27 chr13 20569998 20570220 -99174678 + MIR SINE MIR 10 262 0 258 268 0 0 chr13 20570429 20570541 -99174357 + (TA)n Simple_repeat Simple_repeat 2 113 0 241 318 0 0 chr13 20571351 20571414 -99173484 - L3b LINE CR1 -139 1444 1382 2351 92 6 13 chr13 20571839 20572154 -99172744 + AluSp SINE Alu 1 313 0 709 279 107 38 chr13 20572250 20572902 -99171996 + L1ME4a LINE L1 5278 5974 -147 280 290 6 0 chr13 20573590 20573675 -99171223 - MIR3 SINE MIR -22 186 100 189 255 0 39 chr13 20573760 20573811 -99171087 - L3 LINE CR1 -603 974 926 601 347 73 29 chr13 20574804 20575282 -99169616 + L2 LINE L2 2808 3306 -7 1337 189 184 19 chr13 20576077 20576500 -99168398 + LTR54B LTR ERV1 2 494 -4 23 54 0 0 chr13 20576620 20576657 -99168241 + AT_rich Low_complexity Low_complexity 1 37 0 306 330 78 35 chr13 20577133 20577415 -99167483 - L1ME LINE L1 -502 6117 5824 244 258 48 0 chr13 20577613 20577675 -99167223 - MIR SINE MIR -67 141 77 222 200 0 0 chr13 20578899 20578939 -99165959 + CT-rich Low_complexity Low_complexity 2 41 0 587 226 43 24 chr13 20579094 20579258 -99165640 - MER96B DNA MER1_type? -238 179 13 2622 36 0 0 chr13 20580298 20580599 -99164299 - AluY SINE Alu -10 301 1 240 216 284 11 chr13 20582514 20582602 -99162296 + L2 LINE L2 3199 3310 -3 23 0 0 0 chr13 20582621 20582644 -99162254 + AT_rich Low_complexity Low_complexity 1 23 0 222 319 78 35 chr13 20584951 20585067 -99159831 - MIR SINE MIR -70 138 18 290 136 0 0 chr13 20586866 20586910 -99157988 + L1PBa LINE L1 2443 2486 -4377 705 146 88 0 chr13 20586910 20587047 -99157851 + L1PBa LINE L1 2444 2592 -4271 1221 213 28 19 chr13 20587113 20587474 -99157424 + L1PB3 LINE L1 5040 5403 -743 3471 142 30 5 chr13 20587483 20588073 -99156825 + L1PB3 LINE L1 5543 6147 -7 35 54 0 0 chr13 20588369 20588425 -99156473 + AT_rich Low_complexity Low_complexity 1 56 0 25 31 0 0 chr13 20588465 20588497 -99156401 + AT_rich Low_complexity Low_complexity 1 32 0 764 365 90 9 chr13 20588688 20589234 -99155664 + L2 LINE L2 1763 2352 -962 437 240 48 32 chr13 20589441 20589566 -99155332 - L2 LINE L2 0 3313 3187 504 238 0 10 chr13 20589638 20589739 -99155159 - AluJb SINE Alu -17 295 196 635 240 0 7 chr13 20589758 20589908 -99154990 - L1ME LINE L1 -1160 5484 5336 3689 236 86 42 chr13 20589917 20591635 -99153263 - L1ME LINE L1 -3850 2794 1001 815 263 48 12 chr13 20591851 20592102 -99152796 - L1ME LINE L1 -6281 261 2 1664 219 51 22 chr13 20592111 20592618 -99152280 - L1M4 LINE L1 -1314 4832 4311 403 325 70 37 chr13 20592625 20592896 -99152002 + L2 LINE L2 2698 2977 -337 2624 226 42 8 chr13 20592909 20593501 -99151397 + L1MC1 LINE L1 4 615 -5811 290 275 14 0 chr13 20593504 20593573 -99151325 + L1MC1 LINE L1 573 642 -5784 6951 240 49 7 chr13 20593574 20595681 -99149217 + L1MC1 LINE L1 3147 5342 -1084 6179 133 39 18 chr13 20595693 20596766 -99148132 + L1MC1 LINE L1 5518 6612 -1 30 45 0 0 chr13 20596981 20597025 -99147873 + AT_rich Low_complexity Low_complexity 1 44 0 331 138 0 94 chr13 20597026 20597207 -99147691 + (TAA)n Simple_repeat Simple_repeat 3 166 0 323 278 11 0 chr13 20597207 20597297 -99147601 - L1MC4 LINE L1 -1338 6704 6614 271 271 0 0 chr13 20597298 20597383 -99147515 + (TA)n Simple_repeat Simple_repeat 1 85 0 260 347 68 16 chr13 20597531 20597721 -99147177 - MIR SINE MIR -61 201 2 391 370 74 31 chr13 20597832 20598346 -99146552 - L2 LINE L2 -2606 708 173 2105 118 7 0 chr13 20598586 20598873 -99146025 + AluSx SINE Alu 1 289 -23 245 377 85 41 chr13 20601168 20601723 -99143175 + L2 LINE L2 212 790 -2524 798 276 5 5 chr13 20602363 20602548 -99142350 - MIR SINE MIR -20 242 58 865 249 13 27 chr13 20602912 20603137 -99141761 + MIR SINE MIR 41 262 0 206 279 0 0 chr13 20603164 20603207 -99141691 + L3 LINE CR1 731 773 -804 209 343 168 22 chr13 20605698 20605835 -99139063 - L2 LINE L2 -605 2709 2553 6171 87 14 2 chr13 20607435 20608279 -99136619 - L1PA10 LINE L1 -11 6157 5304 186 259 190 9 chr13 20608474 20608590 -99136308 - L2 LINE L2 -100 3213 3077 21 36 0 0 chr13 20609486 20609514 -99135384 + AT_rich Low_complexity Low_complexity 1 28 0 215 245 0 0 chr13 20610051 20610104 -99134794 + T-rich Low_complexity Low_complexity 1 53 0 927 150 40 111 chr13 20610148 20610374 -99134524 - MLT1B LTR MaLR 0 390 181 392 182 0 26 chr13 20610378 20610455 -99134443 - MLT1B LTR MaLR -315 75 1 1199 204 65 46 chr13 20610860 20611256 -99133642 + MER57A LTR ERV1 19 403 0 26 0 0 0 chr13 20611269 20611295 -99133603 + AT_rich Low_complexity Low_complexity 1 26 0 28 61 0 0 chr13 20611330 20611379 -99133519 + AT_rich Low_complexity Low_complexity 1 49 0 22 0 0 0 chr13 20612205 20612227 -99132671 + AT_rich Low_complexity Low_complexity 1 22 0 248 188 31 47 chr13 20613142 20613206 -99131692 + L1MEc LINE L1 1924 1986 -4410 301 278 87 87 chr13 20613315 20613567 -99131331 + L1MEc LINE L1 2120 2371 -4025 709 271 92 0 chr13 20613810 20614039 -99130859 + MER46C DNA MER2_type 10 259 -79 618 78 29 0 chr13 20614157 20614259 -99130639 + (GA)n Simple_repeat Simple_repeat 2 106 0 230 285 89 16 chr13 20614393 20614516 -99130382 + L1MEc LINE L1 2713 2844 -3371 829 20 20 0 chr13 20614521 20614622 -99130276 + L1PA4 LINE L1 6052 6154 -1 2341 52 3 14 chr13 20615048 20615337 -99129561 - AluY SINE Alu -11 300 15 212 119 0 24 chr13 20616129 20616171 -99128727 + (GA)n Simple_repeat Simple_repeat 2 42 0 302 237 185 52 chr13 20616576 20616711 -99128187 + MIR SINE MIR 36 188 -74 2394 82 0 3 chr13 20616761 20617065 -99127833 - AluSp SINE Alu -10 303 1 22 0 0 0 chr13 20617166 20617188 -99127710 + AT_rich Low_complexity Low_complexity 1 22 0 773 144 44 62 chr13 20617188 20617348 -99127550 - MER4D LTR ERV1 -25 878 722 * 1332 87 61 6 chr13 20617323 20617565 -99127333 - MER4D LTR ERV1 -311 592 296 274 303 13 0 chr13 20617741 20617817 -99127081 - MLT1I LTR MaLR -248 161 85 219 269 155 87 chr13 20618192 20618229 -99126669 + MIR SINE MIR 29 62 -200 1732 146 62 4 chr13 20618229 20618504 -99126394 - AluJb SINE Alu -20 292 2 219 269 155 87 chr13 20618504 20618685 -99126213 + MIR SINE MIR 62 262 0 271 241 51 0 chr13 20618905 20618984 -99125914 + (TATATG)n Simple_repeat Simple_repeat 2 84 0 1446 263 78 36 chr13 20619733 20620365 -99124533 - L1ME3A LINE L1 -55 6509 5852 * 2916 273 108 51 chr13 20620357 20621522 -99123376 - L1MDa LINE L1 -1423 5117 4020 2377 132 26 33 chr13 20621522 20621586 -99123312 - L1MA9 LINE L1 0 6312 6249 2444 60 0 25 chr13 20621586 20621905 -99122993 - AluY SINE Alu 0 311 1 2377 132 26 33 chr13 20621905 20622295 -99122603 - L1MA9 LINE L1 -63 6249 5861 2916 273 108 51 chr13 20622295 20622669 -99122229 - L1MDa LINE L1 -2520 4020 3669 2293 97 0 0 chr13 20622669 20622967 -99121931 - AluSx SINE Alu -14 298 1 2916 273 108 51 chr13 20622967 20625024 -99119874 - L1MDa LINE L1 -2871 3669 1297 547 122 0 0 chr13 20625639 20625721 -99119177 + L1MC1 LINE L1 6247 6328 -5 1377 53 72 91 chr13 20626561 20626770 -99118128 + AluSg SINE Alu 1 205 -105 1856 80 0 28 chr13 20626771 20627041 -99117857 + AluY SINE Alu 42 304 0 3137 183 51 37 chr13 20627119 20627868 -99117030 + L1MC3 LINE L1 6935 7693 -92 236 203 17 0 chr13 20628009 20628068 -99116830 - L1MC3 LINE L1 -151 7634 7575 292 181 24 48 chr13 20628069 20628152 -99116746 + L1MC3 LINE L1 7705 7785 0 21 0 0 0 chr13 20628311 20628332 -99116566 + AT_rich Low_complexity Low_complexity 1 21 0 21 36 0 0 chr13 20628669 20628697 -99116201 + AT_rich Low_complexity Low_complexity 1 28 0 212 343 0 14 chr13 20630815 20630888 -99114010 - L2 LINE L2 0 3313 3242 4730 206 27 39 chr13 20631305 20632463 -99112435 + L1MC3 LINE L1 6641 7784 -1 342 0 0 0 chr13 20634173 20634211 -99110687 + (TG)n Simple_repeat Simple_repeat 2 39 0 3429 188 160 12 chr13 20635138 20635915 -99108983 - THE1C-int LTR MaLR -757 894 3 1678 140 50 20 chr13 20635917 20636217 -99108681 - THE1C LTR MaLR 0 375 67 687 172 9 0 chr13 20636745 20636861 -99108037 + MLT1A1 LTR MaLR 249 365 0 224 320 8 57 chr13 20638736 20638858 -99106040 + L2 LINE L2 3155 3270 -43 23 0 0 0 chr13 20638866 20638889 -99106009 + AT_rich Low_complexity Low_complexity 1 23 0 738 171 0 0 chr13 20638892 20639021 -99105877 - L1MA5 LINE L1 -3 6297 6169 248 333 0 0 chr13 20639182 20639254 -99105644 + (TCCA)n Simple_repeat Simple_repeat 2 73 0 276 100 0 0 chr13 20640188 20640228 -99104670 + (TG)n Simple_repeat Simple_repeat 1 40 0 430 274 51 57 chr13 20640246 20640421 -99104477 + L3 LINE CR1 923 1096 -481 284 384 18 0 chr13 20640427 20640539 -99104359 + L3 LINE CR1 1461 1574 -3 296 334 26 0 chr13 20640576 20640690 -99104208 - MIR SINE MIR -64 144 19 187 346 141 5 chr13 20640690 20640875 -99104023 + L3 LINE CR1 1098 1307 -270 236 275 119 0 chr13 20641022 20641131 -99103767 + MLT1J LTR MaLR 32 153 -358 346 277 42 50 chr13 20641449 20641709 -99103189 + HAL1 LINE L1 2246 2503 -4 1908 94 12 101 chr13 20643118 20643446 -99101452 - AluSq SINE Alu -14 299 1 25 0 0 0 chr13 20643448 20643473 -99101425 + AT_rich Low_complexity Low_complexity 1 25 0 231 292 45 0 chr13 20844734 20844823 -98900075 + MER112 DNA MER1_type 19 111 -149 291 140 0 0 chr13 20844832 20844882 -98900016 + (T)n Simple_repeat Simple_repeat 1 50 0 1652 94 8 0 chr13 20845546 20845780 -98899118 - L1PA11 LINE L1 0 6174 5939 530 213 7 7 chr13 20845917 20846053 -98898845 + MER3 DNA MER1_type 34 122 -87 1216 206 90 27 chr13 20846061 20846311 -98898587 + MER3 DNA MER1_type 2234 2516 -108 2265 120 0 18 chr13 20846311 20846652 -98898246 - MER1B DNA MER1_type 0 337 3 1216 206 90 27 chr13 20846652 20846769 -98898129 + MER3 DNA MER1_type 2516 2624 0 394 281 61 0 chr13 20846905 20847048 -98897850 - MIR SINE MIR -67 141 8 296 269 21 21 chr13 20847326 20847419 -98897479 - MIR SINE MIR 0 262 170 202 214 60 60 chr13 20847510 20847594 -98897304 - MIR SINE MIR -102 106 23 544 232 8 24 chr13 20848471 20848596 -98896302 + MIR SINE MIR 32 154 -108 181 352 45 50 chr13 20848842 20849021 -98895877 + L2 LINE L2 2576 2753 -561 4468 236 34 38 chr13 20849138 20849917 -98894981 + L1MC1 LINE L1 3193 3965 -2181 1222 222 12 102 chr13 20849917 20850318 -98894580 + MLT1A1 LTR MaLR 1 365 0 4468 236 34 38 chr13 20850318 20850950 -98893948 + L1MC1 LINE L1 3965 4598 -1548 1514 78 4 91 chr13 20851050 20851292 -98893606 - MLT2A2 LTR ERVL -232 221 1 2111 207 56 14 chr13 20851297 20851742 -98893156 - MER88 LTR ERVL 0 464 1 5341 181 43 38 chr13 20851742 20852936 -98891962 + L1MC1 LINE L1 4651 5840 -493 2009 95 57 3 chr13 20852936 20853219 -98891679 + AluSq SINE Alu 1 298 -15 5341 181 43 38 chr13 20853219 20853715 -98891183 + L1MC1 LINE L1 5840 6332 -1 366 309 98 66 chr13 20853747 20854216 -98890682 + L1ME4a LINE L1 2506 2989 -3157 25 0 0 0 chr13 20854229 20854254 -98890644 + AT_rich Low_complexity Low_complexity 1 25 0 22 35 0 0 chr13 20854616 20854645 -98890253 + AT_rich Low_complexity Low_complexity 1 29 0 327 303 20 7 chr13 20854870 20855056 -98889842 + L1ME4a LINE L1 5282 5468 -723 302 308 121 57 chr13 20855073 20855512 -98889386 + L1ME4a LINE L1 5491 5957 -164 23 0 0 0 chr13 20855535 20855558 -98889340 + AT_rich Low_complexity Low_complexity 1 23 0 243 0 0 0 chr13 20855662 20855689 -98889209 + (TG)n Simple_repeat Simple_repeat 2 28 0 23 33 0 0 chr13 20855831 20855861 -98889037 + AT_rich Low_complexity Low_complexity 1 30 0 591 280 0 36 chr13 20855900 20856068 -98888830 - MIR SINE MIR 0 262 101 2324 61 3 26 chr13 20856165 20856478 -98888420 + AluY SINE Alu 1 306 -5 2020 40 24 12 chr13 20856478 20856727 -98888171 + AluY SINE Alu 50 302 -9 2559 51 3 3 chr13 20856737 20857048 -98887850 + AluY SINE Alu 1 311 0 2487 213 114 20 chr13 20857612 20858373 -98886525 - L1ME2 LINE L1 -15 6149 5317 739 234 43 59 chr13 20858355 20858727 -98886171 - L1ME2 LINE L1 -1698 4448 4083 * 288 238 60 12 chr13 20858760 20858844 -98886054 - MLT1C LTR MaLR -379 88 1 633 173 30 23 chr13 20858844 20858977 -98885921 - MLT1C-int LTR MaLR 0 1371 1238 245 172 35 52 chr13 20858985 20859043 -98885855 - MLT1C-int LTR MaLR -110 1625 1569 3320 255 67 36 chr13 20859201 20860345 -98884553 - MLT1C-int LTR MaLR -152 1219 40 435 202 0 0 chr13 20860875 20860969 -98883929 + (CATATA)n Simple_repeat Simple_repeat 5 98 0 384 280 251 6 chr13 20863499 20863674 -98881224 + MIR SINE MIR 34 251 -11 207 0 0 0 chr13 20863908 20863931 -98880967 + (TG)n Simple_repeat Simple_repeat 2 24 0 856 217 73 42 chr13 20864759 20865045 -98879853 + L1MA9 LINE L1 5889 6183 -108 2273 144 5 52 chr13 20866803 20867207 -98877691 + MLT1B LTR MaLR 1 385 -5 3494 129 79 66 chr13 20867908 20868676 -98876222 + LTR1 LTR ERV1 8 785 0 517 202 16 47 chr13 20868676 20868805 -98876093 + HUERS-P2 LTR ERV1 1 125 -2963 653 47 0 0 chr13 20868824 20868910 -98875988 + AluY SINE Alu 216 301 -10 223 315 92 23 chr13 20869984 20870114 -98874784 + MIR SINE MIR 14 152 -110 625 295 211 21 chr13 20870147 20870622 -98874276 + MER45C DNA AcHobo 38 602 -351 536 211 108 108 chr13 20870672 20870910 -98873988 + MER45C DNA AcHobo 719 953 0 183 309 0 0 chr13 20871009 20871051 -98873847 + L2 LINE L2 3142 3183 -89 22 0 0 0 chr13 20871493 20871515 -98873383 + AT_rich Low_complexity Low_complexity 1 22 0 2112 240 118 16 chr13 20872711 20873468 -98871430 - L1MC4a LINE L1 0 7808 6975 291 267 92 17 chr13 20873756 20873876 -98871022 - MIR SINE MIR -86 176 48 280 299 17 8 chr13 20875118 20875235 -98869663 + (TA)n Simple_repeat Simple_repeat 2 119 0 276 124 52 10 chr13 20875258 20875355 -98869543 + (TA)n Simple_repeat Simple_repeat 2 102 0 27 0 0 0 chr13 20875367 20875394 -98869504 + AT_rich Low_complexity Low_complexity 1 27 0 27482 94 9 12 chr13 20876296 20881271 -98863627 + L1PA7 LINE L1 1196 6152 -2 208 338 25 0 chr13 20881715 20881795 -98863103 + MIR SINE MIR 81 162 -100 1348 202 125 38 chr13 20882420 20882863 -98862035 - MER66A LTR ERV1 0 601 100 318 341 34 52 chr13 20883016 20883283 -98861615 - L2 LINE L2 -19 3294 3033 492 268 258 5 chr13 20883412 20883621 -98861277 - MIR SINE MIR 0 262 1 2275 95 33 10 chr13 20883961 20884266 -98860632 + AluSx SINE Alu 1 312 0 812 273 23 23 chr13 20884311 20884619 -98860279 - HAL1 LINE L1 -137 2370 2063 327 149 0 0 chr13 20886084 20886158 -98858740 + (TA)n Simple_repeat Simple_repeat 2 75 0 24 53 0 0 chr13 20886580 20886618 -98858280 + AT_rich Low_complexity Low_complexity 1 38 0 376 218 40 10 chr13 20886757 20886849 -98858049 + L1MA9 LINE L1 6125 6222 -90 471 63 0 0 chr13 20886849 20886912 -98857986 + (TA)n Simple_repeat Simple_repeat 2 64 0 216 274 0 0 chr13 20887108 20887159 -98857739 + (TATG)n Simple_repeat Simple_repeat 1 51 0 850 210 19 39 chr13 20887467 20887724 -98857174 + MER96B DNA MER1_type? 164 415 -2 3669 243 68 24 chr13 20888095 20889939 -98854959 + L1MCb LINE L1 3 2124 -4440 2734 239 51 40 chr13 20889972 20890227 -98854671 + L1MCb LINE L1 2205 2456 -4108 2200 116 0 3 chr13 20890227 20890530 -98854368 + AluSq SINE Alu 1 302 -11 2734 239 51 40 chr13 20890530 20891490 -98853408 + L1MCb LINE L1 2456 3429 -3135 574 128 77 0 chr13 20891490 20891607 -98853291 + L1MA9 LINE L1 6177 6302 -10 2734 239 51 40 chr13 20891607 20891747 -98853151 + L1MCb LINE L1 3429 3566 -2998 969 243 18 74 chr13 20891763 20892071 -98852827 + L1MCb LINE L1 4644 4968 -1596 2488 56 0 3 chr13 20892071 20892373 -98852525 + AluY SINE Alu 1 301 -10 969 243 18 74 chr13 20892373 20892684 -98852214 + L1MCb LINE L1 4968 5332 -1232 2202 58 10 48 chr13 20893227 20893538 -98851360 - AluY SINE Alu -12 299 1 233 204 0 0 chr13 20894415 20894464 -98850434 + L1MB4 LINE L1 6126 6174 -6 297 231 56 37 chr13 20894593 20894701 -98850197 + MIR3 SINE MIR 99 208 0 332 385 65 7 chr13 20895063 20895338 -98849560 + Tigger8 DNA MER2_type 354 644 -22 1899 134 28 3 chr13 20895423 20895707 -98849191 + AluSx SINE Alu 1 291 -21 3773 169 29 69 chr13 20897116 20897299 -98847599 - L1MA7 LINE L1 0 6291 6102 283 71 0 24 chr13 20897299 20897335 -98847563 + AluY SINE Alu 1 36 -261 1510 74 5 0 chr13 20897335 20897525 -98847373 + AluY SINE Alu 112 302 -9 3773 169 29 69 chr13 20897530 20898177 -98846721 - L1MA7 LINE L1 -189 6102 5455 * 5590 159 22 5 chr13 20898166 20899234 -98845664 + L1 LINE L1 3783 4869 -1277 2118 43 0 0 chr13 20899646 20899900 -98844998 + L1PA3 LINE L1 5899 6152 -3 361 305 0 30 chr13 20900670 20900801 -98844097 + MIR SINE MIR 57 183 -79 328 290 28 9 chr13 20900885 20900992 -98843906 - MIR SINE MIR -46 216 108 22 21 0 62 chr13 20902445 20902466 -98842432 + AT_rich Low_complexity Low_complexity 1 22 -23 1636 162 49 18 chr13 20902466 20902750 -98842148 - AluJb SINE Alu -19 293 1 22 21 0 62 chr13 20902750 20902776 -98842122 + AT_rich Low_complexity Low_complexity 22 45 0 2229 57 18 0 chr13 20902786 20903068 -98841830 - AluY SINE Alu -24 287 1 2591 52 0 0 chr13 20903418 20903726 -98841172 + AluY SINE Alu 1 308 -3 542 281 77 73 chr13 20904822 20905096 -98839802 + MLT1J LTR MaLR 52 326 -185 235 271 0 0 chr13 20905189 20905259 -98839639 - L1MC4 LINE L1 -1324 6718 6649 28 48 0 0 chr13 20905259 20905301 -98839597 + AT_rich Low_complexity Low_complexity 1 42 0 668 318 34 0 chr13 20905529 20905765 -98839133 + MIR SINE MIR 19 262 0 234 0 0 0 chr13 20905794 20905820 -98839078 + (TTG)n Simple_repeat Simple_repeat 2 27 0 1432 223 64 22 chr13 20906620 20907028 -98837870 + MLT1C LTR MaLR 42 466 -1 3706 256 59 34 chr13 20907029 20908218 -98836680 + MLT1C-int LTR MaLR 1 1219 -152 245 172 35 52 chr13 20908376 20908434 -98836464 + MLT1C-int LTR MaLR 1569 1625 -110 633 173 30 23 chr13 20908442 20908575 -98836323 + MLT1C-int LTR MaLR 1238 1371 0 288 238 60 12 chr13 20908575 20908659 -98836239 + MLT1C LTR MaLR 1 88 -379 739 234 43 59 chr13 20908692 20909064 -98835834 + L1ME2 LINE L1 4083 4448 -1698 * 2487 213 114 20 chr13 20909046 20909807 -98835091 + L1ME2 LINE L1 5317 6149 -15 2527 55 3 3 chr13 20910371 20910681 -98834217 - AluY SINE Alu -1 310 1 2203 45 59 10 chr13 20910691 20910979 -98833919 - AluY SINE Alu -9 302 1 292 200 27 13 chr13 20911075 20911150 -98833748 + L1M LINE L1 5322 5397 -903 2438 140 30 21 chr13 20912428 20912856 -98832042 + Tigger2a DNA MER2_type 1 432 -2 808 163 75 27 chr13 20912904 20913051 -98831847 + FRAM SINE Alu 4 157 -9 30 0 0 0 chr13 20915182 20915212 -98829686 + AT_rich Low_complexity Low_complexity 1 30 0 2522 50 0 0 chr13 20915469 20915772 -98829126 - AluY SINE Alu -8 303 1 21 57 0 0 chr13 20915969 20916004 -98828894 + AT_rich Low_complexity Low_complexity 1 35 0 312 91 0 0 chr13 20916078 20916122 -98828776 + (CA)n Simple_repeat Simple_repeat 2 45 0 216 0 0 0 chr13 20917141 20917165 -98827733 + (TTTTG)n Simple_repeat Simple_repeat 1 24 0 1049 33 8 0 chr13 20917184 20917306 -98827592 - AluY SINE Alu -188 123 1 712 68 4 2 chr13 20917527 20917777 -98827121 + AluY SINE Alu 1 307 -4 1725 229 106 8 chr13 20917948 20918468 -98826430 - MER90 LTR ERV1 -4 571 1 1972 129 0 10 chr13 20919379 20919673 -98825225 - AluSg SINE Alu -19 291 1 643 89 68 0 chr13 20920068 20920402 -98824496 + (TA)n Simple_repeat Simple_repeat 1 356 0 25 0 0 0 chr13 20920410 20920435 -98824463 + AT_rich Low_complexity Low_complexity 1 25 0 321 207 0 0 chr13 20920572 20920659 -98824239 + (CCA)n Simple_repeat Simple_repeat 3 89 0 564 241 0 0 chr13 20920680 20920854 -98824044 + (CCA)n Simple_repeat Simple_repeat 3 176 0 639 178 18 12 chr13 20920890 20921059 -98823839 + (CACCAT)n Simple_repeat Simple_repeat 1 170 0 995 298 108 34 chr13 20921609 20922217 -98822681 - MER115 DNA AcHobo -9 684 1 236 250 0 0 chr13 20922215 20922267 -98822631 + LTR30 LTR ERV1 1 52 -670 * 1626 109 122 170 chr13 20922304 20922663 -98822235 + LTR12 LTR ERV1 55 389 -325 1940 144 0 3 chr13 20922663 20922961 -98821937 + AluY SINE Alu 1 297 -14 1626 109 122 170 chr13 20922961 20923061 -98821837 + LTR12 LTR ERV1 389 492 -222 26 30 0 0 chr13 20923164 20923197 -98821701 + AT_rich Low_complexity Low_complexity 1 33 0 24 32 0 0 chr13 20923246 20923277 -98821621 + AT_rich Low_complexity Low_complexity 1 31 0 26 50 0 0 chr13 20923591 20923631 -98821267 + AT_rich Low_complexity Low_complexity 1 40 0 2399 57 7 13 chr13 20924658 20924957 -98819941 + AluY SINE Alu 1 297 -14 6761 53 21 0 chr13 20925159 20925372 -98819526 - L1PA7 LINE L1 -3 6151 5944 2034 68 0 19 chr13 20925372 20925636 -98819262 - AluY SINE Alu -15 296 38 6761 53 21 0 chr13 20925636 20926482 -98818416 - L1PA7 LINE L1 -210 5944 5107 687 39 39 10 chr13 20926482 20926584 -98818314 + L1P LINE L1 4617 4721 -1425 * 2285 239 81 49 chr13 20926579 20928097 -98816801 + L1ME2 LINE L1 4214 5793 -371 726 146 37 7 chr13 20928112 20928258 -98816640 - L1MD3 LINE L1 0 7995 7632 994 219 259 77 chr13 20928261 20928791 -98816107 + MER51A LTR ERV1 1 626 -8 2344 188 68 10 chr13 20928816 20929316 -98815582 - L1MC3 LINE L1 -157 7628 7100 1081 212 92 15 chr13 20929369 20929694 -98815204 + L1ME2 LINE L1 5807 6156 -8 186 340 170 0 chr13 20930966 20931066 -98813832 - L2 LINE L2 -2 3270 3154 309 135 0 0 chr13 20932040 20932092 -98812806 + (CA)n Simple_repeat Simple_repeat 2 53 0 2413 69 0 0 chr13 20932702 20933008 -98811890 + AluY SINE Alu 1 306 -5 1597 259 25 66 chr13 20933008 20933764 -98811134 - L1ME3A LINE L1 -192 6238 5514 373 335 101 8 chr13 20933777 20934025 -98810873 - L1ME3A LINE L1 -905 5501 5231 307 284 142 24 chr13 20934228 20934397 -98810501 - L1ME3A LINE L1 -1313 5093 4905 649 195 84 39 chr13 20934405 20934559 -98810339 + FRAM SINE Alu 1 158 -18 228 236 31 87 chr13 20934562 20934689 -98810209 - L1ME3A LINE L1 -1511 4895 4776 23 54 0 0 chr13 20934760 20934797 -98810101 + AT_rich Low_complexity Low_complexity 1 37 0 373 201 102 76 chr13 20934885 20935222 -98809676 - L1MEc LINE L1 -3795 2611 2322 2542 151 26 16 chr13 20935236 20935740 -98809158 - L1MA8 LINE L1 0 6291 5783 21 36 0 0 chr13 20935894 20935922 -98808976 + AT_rich Low_complexity Low_complexity 1 28 0 22 70 0 0 chr13 20936048 20936091 -98808807 + AT_rich Low_complexity Low_complexity 1 43 0 227 311 24 12 chr13 20936252 20936419 -98808479 - L1MEc LINE L1 -5071 1338 1170 205 135 39 0 chr13 20937775 20937827 -98807071 + (CGG)n Simple_repeat Simple_repeat 2 55 0 454 385 42 4 chr13 20938951 20939211 -98805687 + L3 LINE CR1 930 1199 -378 211 296 102 71 chr13 20939417 20939515 -98805383 + L3 LINE CR1 1472 1572 -5 1512 226 64 0 chr13 20939761 20940120 -98804778 - MLT1C-int LTR MaLR -989 382 1 1813 191 89 19 chr13 20940124 20940549 -98804349 - MLT1C LTR MaLR -7 460 6 576 248 47 0 chr13 20941001 20941150 -98803748 + MIR SINE MIR 81 236 -26 303 93 0 0 chr13 20941721 20941764 -98803134 + (TG)n Simple_repeat Simple_repeat 2 44 0 2844 25 0 0 chr13 20942626 20942966 -98801932 - AluYb8 SINE Alu 0 340 1 2252 130 24 3 chr13 20943396 20943774 -98801124 + L1PB3 LINE L1 5588 5973 -181 285 71 14 86 chr13 20943813 20943883 -98801015 + L1PB3 LINE L1 5956 6020 -134 2452 84 0 0 chr13 20947499 20947810 -98797088 + AluY SINE Alu 1 311 0 381 337 90 31 chr13 20948068 20948559 -98796339 - L2 LINE L2 -671 2643 2072 207 0 0 0 chr13 20949631 20949654 -98795244 + (CTG)n Simple_repeat Simple_repeat 1 23 0 2221 88 7 0 chr13 20951207 20951501 -98793397 + AluY SINE Alu 1 296 -15 2549 51 0 3 chr13 20954480 20954792 -98790106 - AluY SINE Alu 0 311 1 1654 196 3 3 chr13 20955678 20955984 -98788914 + AluJo SINE Alu 1 306 -6 2994 209 22 57 chr13 20955985 20956490 -98788408 - L1MD1 LINE L1 -59 6183 5716 1785 170 0 21 chr13 20956490 20956798 -98788100 + AluJo SINE Alu 1 302 0 2994 209 22 57 chr13 20956798 20957141 -98787757 - L1MD1 LINE L1 -526 5716 5363 372 104 26 26 chr13 20957154 20957231 -98787667 + CT-rich Low_complexity Low_complexity 3 79 0 867 212 12 0 chr13 20957239 20957409 -98787489 - FRAM SINE Alu -4 172 1 1680 239 128 7 chr13 20957414 20958013 -98786885 - L1MD1 LINE L1 -821 5325 4654 886 177 0 6 chr13 20958011 20958186 -98786712 + L1MC/D LINE L1 5446 5619 -623 * 934 353 85 36 chr13 20958732 20960086 -98784812 + L2 LINE L2 748 2167 -1147 324 250 0 38 chr13 20960169 20960249 -98784649 + MER45A DNA AcHobo 1 77 -101 1502 135 23 0 chr13 20960302 20960562 -98784336 - L1MA2 LINE L1 0 6304 6039 362 147 29 15 chr13 20960563 20960631 -98784267 + MER45A DNA AcHobo 100 168 -10 197 400 27 0 chr13 20960667 20960777 -98784121 + L2 LINE L2 2565 2677 -637 242 233 17 0 chr13 20960986 20961056 -98783842 - L1M1 LINE L1 -551 5752 5682 201 147 0 0 chr13 20961058 20961092 -98783806 + (TAGA)n Simple_repeat Simple_repeat 1 34 0 285 283 67 2 chr13 20961125 20961368 -98783530 - L1ME LINE L1 -484 5637 5375 608 283 124 75 chr13 20961497 20962371 -98782527 - L1ME LINE L1 -873 5273 4358 308 289 59 17 chr13 20962569 20962858 -98782040 - L1ME LINE L1 -2166 3980 3682 266 195 79 0 chr13 20963337 20963501 -98781397 + (TA)n Simple_repeat Simple_repeat 2 178 0 479 154 10 58 chr13 20963571 20963675 -98781223 - AluJb SINE Alu -13 299 201 * 513 176 0 0 chr13 20963668 20963753 -98781145 - FRAM SINE Alu -73 103 19 607 210 11 11 chr13 20964595 20964771 -98780127 + (ATGGTG)n Simple_repeat Simple_repeat 4 179 0 280 339 51 26 chr13 20965209 20965404 -98779494 - L2 LINE L2 -1 3312 3113 318 106 0 0 chr13 20965481 20965528 -98779370 + (TA)n Simple_repeat Simple_repeat 1 47 0 297 75 0 0 chr13 20965521 20965561 -98779337 + (CA)n Simple_repeat Simple_repeat 2 41 0 * 3092 63 0 0 chr13 20965561 20965959 -98778939 - MLT2A1 LTR ERVL -46 398 1 2132 108 3 7 chr13 20966967 20967264 -98777634 - AluSg SINE Alu -14 296 1 234 0 0 0 chr13 20968743 20968769 -98776129 + (CA)n Simple_repeat Simple_repeat 2 27 0 2352 87 3 10 chr13 20968797 20969109 -98775789 - AluY SINE Alu -1 310 1 332 238 109 30 chr13 20969430 20969531 -98775367 + MER110-int LTR ERV1 2748 2856 -1791 324 157 54 0 chr13 20969742 20969908 -98774990 + (TA)n Simple_repeat Simple_repeat 1 175 0 2230 106 0 3 chr13 20970153 20970446 -98774452 - AluY SINE Alu -19 292 1 2303 93 0 3 chr13 20970564 20970865 -98774033 - AluY SINE Alu -11 300 1 23 0 0 0 chr13 20970957 20970980 -98773918 + AT_rich Low_complexity Low_complexity 1 23 0 559 272 146 7 chr13 20970981 20971215 -98773683 - MIR SINE MIR -21 241 3 778 161 13 7 chr13 20971248 20971397 -98773501 + MER58B DNA MER1_type 177 326 -15 2314 50 7 27 chr13 20971733 20972033 -98772865 + AluY SINE Alu 1 294 -17 199 41 102 0 chr13 20972237 20972286 -98772612 + (CCTG)n Simple_repeat Simple_repeat 1 54 0 2467 66 0 0 chr13 20972458 20972760 -98772138 + AluY SINE Alu 1 302 -9 315 0 0 0 chr13 20973934 20973969 -98770929 + (TG)n Simple_repeat Simple_repeat 2 36 0 21 26 0 26 chr13 20974075 20974087 -98770811 + AT_rich Low_complexity Low_complexity 1 12 -26 4811 90 20 23 chr13 20974087 20974443 -98770455 + L1PB1 LINE L1 5417 5772 -379 387 0 0 0 chr13 20974443 20974486 -98770412 + (CA)n Simple_repeat Simple_repeat 2 44 0 4811 90 20 23 chr13 20974486 20974504 -98770394 + L1PB1 LINE L1 5772 5789 -362 1635 100 4 4 chr13 20974504 20974733 -98770165 + AluY SINE Alu 67 295 -16 4811 90 20 23 chr13 20974733 20974908 -98769990 + L1PB1 LINE L1 5789 5963 -188 3666 107 99 31 chr13 20974908 20975501 -98769397 - LTR12 LTR ERV1 0 688 46 2395 76 3 0 chr13 20975501 20975803 -98769095 + AluY SINE Alu 1 303 -8 3666 107 99 31 chr13 20975803 20975853 -98769045 - LTR12 LTR ERV1 -642 46 1 4811 90 20 23 chr13 20975853 20976036 -98768862 + L1PB1 LINE L1 5963 6149 -2 21 26 0 26 chr13 20976036 20976062 -98768836 + AT_rich Low_complexity Low_complexity 12 38 0 23 54 0 0 chr13 20976346 20976383 -98768515 + AT_rich Low_complexity Low_complexity 1 37 0 1786 139 7 53 chr13 20977818 20978120 -98766778 + AluSx SINE Alu 1 288 -24 287 299 58 73 chr13 20978673 20978810 -98766088 + L2 LINE L2 3138 3272 0 1005 149 56 5 chr13 20979861 20980075 -98764823 + L1MC3 LINE L1 7470 7694 -91 * 1723 164 138 61 chr13 20980070 20980268 -98764630 + L1MA6 LINE L1 5754 5935 -365 1800 155 14 0 chr13 20980268 20980578 -98764320 + AluSx SINE Alu 1 314 0 1723 164 138 61 chr13 20980578 20980882 -98764016 + L1MA6 LINE L1 5935 6298 -2 554 138 21 0 chr13 20980879 20980973 -98763925 + L1MC3 LINE L1 7677 7772 -13 * 23 0 0 0 chr13 20982507 20982530 -98762368 + AT_rich Low_complexity Low_complexity 1 23 0 269 334 141 10 chr13 20983770 20983979 -98760919 + MIR SINE MIR 18 248 -14 1673 167 37 14 chr13 20984200 20984554 -98760344 + L1MA4 LINE L1 5939 6300 0 924 269 48 85 chr13 20984737 20985221 -98759677 - MLT1K LTR MaLR 0 588 123 220 342 89 0 chr13 20985992 20986071 -98758827 + MIR SINE MIR 26 111 -97 4569 167 26 2 chr13 20986588 20987698 -98757200 + L1MA4A LINE L1 4431 5564 -736 3186 141 94 0 chr13 20987699 20988304 -98756594 + L1MA4A LINE L1 5639 6300 -3 200 211 18 18 chr13 20988411 20988468 -98756430 + (TG)n Simple_repeat Simple_repeat 2 58 0 3924 137 31 3 chr13 20988512 20989211 -98755687 + L1MA6 LINE L1 5582 6300 0 607 271 49 31 chr13 20989285 20989510 -98755388 + MIR SINE MIR 34 262 0 2133 166 64 5 chr13 20989607 20990011 -98754887 + MSTA LTR MaLR 1 428 0 279 183 28 14 chr13 20990099 20990170 -98754728 - Tigger5 DNA MER2_type -1 2322 2251 2458 55 13 0 chr13 20990394 20990701 -98754197 + AluY SINE Alu 1 311 0 21 36 0 0 chr13 20990701 20990729 -98754169 + AT_rich Low_complexity Low_complexity 1 28 0 244 61 0 41 chr13 20991100 20991149 -98753749 + (TTTTTG)n Simple_repeat Simple_repeat 2 48 0 3043 121 116 82 chr13 20991264 20992023 -98752875 - LTR1 LTR ERV1 0 785 1 23 0 0 0 chr13 20992288 20992311 -98752587 + AT_rich Low_complexity Low_complexity 1 23 0 189 0 0 0 chr13 20992707 20992728 -98752170 + (TA)n Simple_repeat Simple_repeat 2 22 0 2326 96 3 16 chr13 20992731 20993045 -98751853 - AluY SINE Alu -1 310 1 1996 111 11 0 chr13 20993337 20993608 -98751290 - AluSp SINE Alu -16 297 24 2532 118 8 0 chr13 20995296 20995668 -98749230 + THE1C LTR MaLR 1 375 0 236 204 0 0 chr13 20996160 20996209 -98748689 + A-rich Low_complexity Low_complexity 1 49 0 2500 62 7 0 chr13 20997720 20998029 -98746869 - AluY SINE Alu 0 311 1 314 61 20 0 chr13 20998031 20998080 -98746818 + (TTTG)n Simple_repeat Simple_repeat 2 51 0 585 253 22 11 chr13 20998154 20998332 -98746566 - HAL1 LINE L1 -705 1802 1623 204 347 14 20 chr13 20998857 20999004 -98745894 + CT-rich Low_complexity Low_complexity 3 148 0 320 267 108 23 chr13 20999204 20999380 -98745518 - HAL1 LINE L1 -886 1621 1431 2192 84 3 10 chr13 20999415 20999711 -98745187 - AluY SINE Alu -17 294 1 258 274 0 0 chr13 20999722 20999773 -98745125 + MIR SINE MIR 73 123 -85 1974 115 36 20 chr13 20999802 21000106 -98744792 - AluSq SINE Alu -4 309 1 190 302 19 0 chr13 21000157 21000210 -98744688 + L2 LINE L2 2983 3036 -236 2167 140 62 12 chr13 21000229 21000635 -98744263 + MSTB LTR MaLR 1 426 0 2329 105 0 0 chr13 21000654 21000958 -98743940 - AluSg1 SINE Alu -5 304 1 483 307 34 11 chr13 21001377 21001553 -98743345 + MIR SINE MIR 14 193 -69 424 141 45 34 chr13 21002599 21002776 -98742122 + (TA)n Simple_repeat Simple_repeat 1 179 0 6143 149 59 19 chr13 21002831 21004015 -98740883 + Tigger3b DNA MER2_type 1 1231 0 22 0 0 0 chr13 21004897 21004919 -98739979 + AT_rich Low_complexity Low_complexity 1 22 0 643 260 41 6 chr13 21005847 21006016 -98738882 - MIR SINE MIR -14 248 74 2253 90 17 0 chr13 21006026 21006325 -98738573 + AluY SINE Alu 1 304 -7 780 202 85 4 chr13 21006325 21006597 -98738301 + L1MB3 LINE L1 3041 3334 -2812 1996 92 46 4 chr13 21006608 21006889 -98738009 + AluSc SINE Alu 1 293 -16 4324 200 42 14 chr13 21006890 21008695 -98736203 + L1MB3 LINE L1 4327 6181 -2 306 343 126 0 chr13 21009036 21009211 -98735687 - MIR SINE MIR -17 245 49 2442 59 3 3 chr13 21009244 21009550 -98735348 - AluY SINE Alu -5 306 1 435 38 0 0 chr13 21010025 21010078 -98734820 + (TG)n Simple_repeat Simple_repeat 2 54 0 1996 141 0 10 chr13 21011511 21011824 -98733074 - AluSx SINE Alu -2 310 1 197 116 0 23 chr13 21012534 21012577 -98732321 + (TTTTG)n Simple_repeat Simple_repeat 3 44 0 24 53 0 0 chr13 21012709 21012747 -98732151 + AT_rich Low_complexity Low_complexity 1 38 0 470 314 100 32 chr13 21013035 21013106 -98731792 - L1ME4a LINE L1 -209 5912 5847 2179 109 7 0 chr13 21013106 21013400 -98731498 - AluSp SINE Alu -7 306 11 470 314 100 32 chr13 21013400 21013669 -98731229 - L1ME4a LINE L1 -274 5847 5549 227 255 0 0 chr13 21014213 21014260 -98730638 + (CA)n Simple_repeat Simple_repeat 1 47 0 24 85 0 0 chr13 21015205 21015264 -98729634 + AT_rich Low_complexity Low_complexity 1 59 0 355 326 68 7 chr13 21015275 21015422 -98729476 + MIR SINE MIR 21 176 -86 374 293 95 48 chr13 21015971 21016391 -98728507 - L1M4 LINE L1 -2955 3191 2752 479 194 40 49 chr13 21016788 21016827 -98728071 - L1ME1 LINE L1 -5 6161 6123 2507 41 0 3 chr13 21016827 21017121 -98727777 + AluY SINE Alu 1 293 -18 479 194 40 49 chr13 21017121 21017276 -98727622 - L1ME1 LINE L1 -43 6123 5965 336 232 37 0 chr13 21017433 21017515 -98727383 + L1MC1 LINE L1 5997 6081 -252 330 258 6 50 chr13 21017518 21017677 -98727221 - MER52A LTR ERV1 -3 1752 1601 623 206 21 185 chr13 21017677 21018270 -98726628 - MER52A LTR ERV1 -141 495 283 1704 169 11 0 chr13 21018495 21018773 -98726125 - AluJo SINE Alu -31 281 1 235 299 93 31 chr13 21019020 21019117 -98725781 + L2 LINE L2 3162 3264 -8 363 302 76 6 chr13 21019234 21019406 -98725492 + MIR SINE MIR 21 204 -58 989 283 187 38 chr13 21021804 21022829 -98722069 - L2 LINE L2 -52 3261 1968 2151 130 3 13 chr13 21024234 21024549 -98720349 - AluSq SINE Alu -1 312 1 207 139 0 0 chr13 21024961 21024997 -98719901 + (TG)n Simple_repeat Simple_repeat 2 37 0 348 255 89 25 chr13 21025231 21025388 -98719510 - MLT1D LTR MaLR -262 243 77 4246 217 28 28 chr13 21025423 21026408 -98718490 + L1MC2 LINE L1 4378 5361 -983 2629 90 19 3 chr13 21026408 21026775 -98718123 + THE1C LTR MaLR 1 373 -2 4246 217 28 28 chr13 21026775 21027631 -98717267 + L1MC2 LINE L1 5361 6226 -118 321 26 0 0 chr13 21027631 21027669 -98717229 + (TG)n Simple_repeat Simple_repeat 1 38 0 4246 217 28 28 chr13 21027669 21027789 -98717109 + L1MC2 LINE L1 6226 6344 0 3054 171 35 62 chr13 21027765 21028168 -98716730 + L1MB7 LINE L1 5297 5709 -475 * 2018 91 3 24 chr13 21028168 21028482 -98716416 + AluY SINE Alu 1 308 0 3054 171 35 62 chr13 21028482 21028934 -98715964 + L1MB7 LINE L1 5709 6130 -54 2271 72 21 0 chr13 21029035 21029326 -98715572 - AluY SINE Alu -14 297 1 2317 98 0 25 chr13 21029870 21030185 -98714713 - AluY SINE Alu -4 307 1 3649 171 17 65 chr13 21030229 21031212 -98713686 + L1MA8 LINE L1 4857 5760 -531 2322 107 0 0 chr13 21031212 21031521 -98713377 + AluSg SINE Alu 1 309 -1 3649 171 17 65 chr13 21031521 21031834 -98713064 + L1MA8 LINE L1 5760 6086 -205 210 375 55 34 chr13 21031988 21032225 -98712673 - L2 LINE L2 -661 2653 2412 2175 111 7 0 chr13 21032348 21032645 -98712253 + AluSg SINE Alu 1 299 -11 1603 174 7 43 chr13 21032964 21033268 -98711630 - AluJb SINE Alu -15 297 5 2511 73 0 0 chr13 21033291 21033592 -98711306 - AluY SINE Alu -4 307 7 678 84 0 0 chr13 21033933 21034028 -98710870 - AluY SINE Alu 0 311 217 23 33 0 0 chr13 21034313 21034343 -98710555 + AT_rich Low_complexity Low_complexity 1 30 0 1550 195 25 42 chr13 21037507 21037938 -98706960 - L1MB7 LINE L1 -9 6175 5752 1169 248 26 0 chr13 21037942 21038253 -98706645 + L1MB7 LINE L1 5404 5722 -456 238 302 10 21 chr13 21039173 21039269 -98705629 + L2 LINE L2 3177 3271 -1 266 328 136 39 chr13 21039327 21039885 -98705013 - L2 LINE L2 -573 2741 2130 1290 218 120 19 chr13 21039976 21040393 -98704505 + MLT1C LTR MaLR 3 461 -6 46 45 0 0 chr13 21041672 21041739 -98703159 + AT_rich Low_complexity Low_complexity 1 67 0 2345 112 0 6 chr13 21042354 21042668 -98702230 - AluSx SINE Alu 0 312 1 180 0 0 0 chr13 21042746 21042766 -98702132 + (CA)n Simple_repeat Simple_repeat 1 20 0 26 23 0 23 chr13 21043089 21043112 -98701786 + AT_rich Low_complexity Low_complexity 1 24 -19 2165 94 0 3 chr13 21043112 21043398 -98701500 + AluSg SINE Alu 1 285 -25 26 23 0 23 chr13 21043398 21043418 -98701480 + AT_rich Low_complexity Low_complexity 24 43 0 279 285 69 32 chr13 21043994 21044240 -98700658 - L1M4 LINE L1 -1995 4151 3897 228 35 0 0 chr13 21044313 21044342 -98700556 + (CAAAAA)n Simple_repeat Simple_repeat 2 30 0 298 298 114 32 chr13 21044609 21044767 -98700131 + L2 LINE L2 3102 3272 0 610 287 36 24 chr13 21045066 21045400 -98699498 + L1MEd LINE L1 920 1257 -4862 352 316 94 33 chr13 21045491 21045703 -98699195 + L1MEd LINE L1 1437 1661 -4649 1538 95 0 25 chr13 21045834 21046077 -98698821 + L1MC/D LINE L1 5321 5557 -787 325 298 12 0 chr13 21046177 21046261 -98698637 - Tigger7 DNA MER2_type -318 232 148 4468 141 47 44 chr13 21046302 21046395 -98698503 - L1MA7 LINE L1 -60 6231 6140 3352 136 7 31 chr13 21046395 21046983 -98697915 + L1PA16 LINE L1 5584 6157 -9 4468 141 47 44 chr13 21046983 21047845 -98697053 - L1MA7 LINE L1 -151 6140 5273 2173 100 0 0 chr13 21050550 21050830 -98694068 + AluSc SINE Alu 1 280 -29 2409 82 0 6 chr13 21050866 21051181 -98693717 + AluSq SINE Alu 1 313 0 199 324 28 0 chr13 21051201 21051272 -98693626 + MIR SINE MIR 57 129 -133 302 358 7 7 chr13 21051717 21051868 -98693030 + LTR33 LTR ERVL 1 151 -370 197 197 16 0 chr13 21052101 21052162 -98692736 + (TAAA)n Simple_repeat Simple_repeat 4 65 0 929 118 0 0 chr13 21052621 21052748 -98692150 - AluJb SINE Alu -16 296 170 733 107 0 9 chr13 21052864 21052976 -98691922 + LTR1 LTR ERV1 382 492 -293 1660 94 0 18 chr13 21052976 21053200 -98691698 - AluY SINE Alu -91 220 1 362 208 28 0 chr13 21053202 21053308 -98691590 + L1ME2 LINE L1 4611 4719 -1427 * 5057 144 42 22 chr13 21053284 21054510 -98690388 + L1MA8 LINE L1 5042 6290 -1 1780 244 47 43 chr13 21054542 21055618 -98689280 + L1ME2 LINE L1 4694 5781 -381 2315 100 0 25 chr13 21055618 21055797 -98689101 - AluSq SINE Alu -2 311 142 2219 98 3 49 chr13 21055797 21056125 -98688773 - AluSp SINE Alu 0 313 1 2315 100 0 25 chr13 21056125 21056264 -98688634 - AluSq SINE Alu -171 142 1 1780 244 47 43 chr13 21056264 21056337 -98688561 + L1ME2 LINE L1 5781 5852 -310 290 311 40 13 chr13 21056358 21056509 -98688389 + L1ME2 LINE L1 5910 6064 -100 * 5386 211 92 52 chr13 21056504 21058159 -98686739 + L1PA13 LINE L1 5293 5438 -725 418 162 0 0 chr13 21058159 21058227 -98686671 + MLT1A1 LTR MaLR 248 315 -50 5386 211 92 52 chr13 21058227 21058982 -98685916 + L1PA13 LINE L1 5438 6162 -1 253 270 40 0 chr13 21058988 21059114 -98685784 + (TA)n Simple_repeat Simple_repeat 1 131 0 189 0 0 0 chr13 21059980 21060001 -98684897 + (TTTTG)n Simple_repeat Simple_repeat 2 22 0 277 384 38 27 chr13 21060072 21060257 -98684641 - MIR SINE MIR -74 188 2 6800 114 7 9 chr13 21060440 21061411 -98683487 - LTR5 LTR ERVK 0 969 1 493 291 53 68 chr13 21061728 21061824 -98683074 - MIR SINE MIR 0 262 166 2225 109 0 26 chr13 21061824 21062135 -98682763 - AluSc SINE Alu -6 303 1 493 291 53 68 chr13 21062135 21062303 -98682595 - MIR SINE MIR -96 166 2 2060 120 21 3 chr13 21062756 21063047 -98681851 - AluSq SINE Alu -17 296 1 2064 156 0 0 chr13 21063462 21063764 -98681134 + AluSx SINE Alu 1 302 -10 2449 83 0 0 chr13 21064329 21064629 -98680269 - AluY SINE Alu -11 300 1 2135 106 0 0 chr13 21065181 21065498 -98679400 - AluY SINE Alu 0 317 1 4639 170 14 21 chr13 21065509 21066228 -98678670 - L1MA6 LINE L1 -5 6295 5583 1673 94 0 45 chr13 21066228 21066472 -98678426 - AluSc SINE Alu -5 304 72 4639 170 14 21 chr13 21066472 21066685 -98678213 - L1MA6 LINE L1 -717 5583 5370 1129 152 8 25 chr13 21066685 21066928 -98677970 + L1 LINE L1 5091 5329 -817 2464 135 8 0 chr13 21066928 21067320 -98677578 + L1PA13 LINE L1 5750 6144 -19 1864 67 28 0 chr13 21067351 21067606 -98677292 + L1PA8 LINE L1 5854 6115 -57 1900 225 83 62 chr13 21067842 21068012 -98676886 - MLT1E1 LTR MaLR 0 654 489 1977 135 3 42 chr13 21068012 21068324 -98676574 - AluSx SINE Alu -12 300 1 1900 225 83 62 chr13 21068324 21068385 -98676513 - MLT1E1 LTR MaLR -165 489 431 228 35 0 0 chr13 21068385 21068414 -98676484 + (TG)n Simple_repeat Simple_repeat 1 29 0 1900 225 83 62 chr13 21068414 21068822 -98676076 - MLT1E1 LTR MaLR -223 431 1 2447 64 18 12 chr13 21069033 21069363 -98675535 - L1PA8 LINE L1 0 6172 5841 2211 95 0 14 chr13 21069374 21069668 -98675230 - AluSx SINE Alu -18 294 5 403 338 35 25 chr13 21069995 21070309 -98674589 + L1MB5 LINE L1 39 355 -6029 3287 238 29 41 chr13 21070430 21071728 -98673170 + L1MB5 LINE L1 554 1842 -4542 848 130 8 23 chr13 21071777 21071908 -98672990 + AluSg/x SINE Alu 161 289 -20 5185 236 58 38 chr13 21071908 21073744 -98671154 + L1MB5 LINE L1 3279 5076 -1334 2238 101 0 7 chr13 21073744 21074042 -98670856 + AluY SINE Alu 1 296 -15 5185 236 58 38 chr13 21074042 21074455 -98670443 + L1MB5 LINE L1 5076 5479 -931 2029 147 0 10 chr13 21074455 21074767 -98670131 - AluSq SINE Alu -4 309 1 5185 236 58 38 chr13 21074767 21074857 -98670041 + L1MB5 LINE L1 5479 5566 -844 1454 162 3 81 chr13 21074857 21075141 -98669757 + AluJo SINE Alu 15 276 -36 5185 236 58 38 chr13 21075141 21075852 -98669046 + L1MB5 LINE L1 5566 6402 -8 341 306 91 30 chr13 21075924 21076123 -98668775 + MIR SINE MIR 46 256 -6 1681 181 18 15 chr13 21076650 21076992 -98667906 + MER2 DNA MER2_type 1 343 -1 902 193 0 0 chr13 21077034 21077184 -98667714 - AluSg/x SINE Alu -14 296 147 2344 155 50 17 chr13 21077184 21077649 -98667249 - LTR12 LTR ERV1 -234 480 1 689 162 8 0 chr13 21077681 21077798 -98667100 - FLAM_C SINE Alu -15 118 1 2183 82 0 0 chr13 21077919 21078200 -98666698 - AluSq SINE Alu -32 281 1 629 302 57 41 chr13 21078402 21078862 -98666036 + MER21-int LTR ERV1 3630 4096 -95 247 362 32 0 chr13 21080028 21080122 -98664776 + L2 LINE L2 3212 3308 -5 24 53 0 0 chr13 21080880 21080918 -98663980 + AT_rich Low_complexity Low_complexity 1 38 0 33 66 0 0 chr13 21080939 21081000 -98663898 + AT_rich Low_complexity Low_complexity 1 61 0 2324 72 3 0 chr13 21081898 21082189 -98662709 - AluY SINE Alu -19 292 1 957 157 0 0 chr13 21085996 21086149 -98658749 + MSTC LTR MaLR 1 153 -275 1640 164 4 4 chr13 21086179 21086441 -98658457 + AluJo SINE Alu 29 290 -22 1521 147 27 31 chr13 21086445 21086738 -98658160 + MSTC LTR MaLR 137 428 0 2368 67 0 7 chr13 21087350 21087648 -98657250 + AluY SINE Alu 1 296 -15 2117 109 3 0 chr13 21087657 21087940 -98656958 + AluSg SINE Alu 7 290 -20 189 0 0 0 chr13 21089104 21089125 -98655773 + (TAAAA)n Simple_repeat Simple_repeat 2 22 0 2251 118 3 0 chr13 21089609 21089913 -98654985 + AluSg SINE Alu 1 305 -5 2246 118 0 0 chr13 21089919 21090216 -98654682 + AluSg SINE Alu 1 297 -13 2399 75 0 3 chr13 21090322 21090628 -98654270 - AluY SINE Alu -6 305 1 2192 222 62 22 chr13 21090628 21091273 -98653625 - Tigger6a DNA MER2_type -64 1019 349 2012 92 14 24 chr13 21091295 21091587 -98653311 - AluSx SINE Alu -23 289 1 180 0 0 0 chr13 21091768 21091788 -98653110 + (T)n Simple_repeat Simple_repeat 1 20 0 1183 107 0 0 chr13 21091811 21091970 -98652928 - AluSq SINE Alu -33 280 122 183 152 0 0 chr13 21091970 21092016 -98652882 + (TA)n Simple_repeat Simple_repeat 2 47 0 885 88 72 0 chr13 21092019 21092144 -98652754 - AluSg SINE Alu -176 134 1 240 226 0 0 chr13 21093037 21093099 -98651799 + T-rich Low_complexity Low_complexity 1 62 0 318 286 188 45 chr13 21093102 21093256 -98651642 - MIR3 SINE MIR -13 195 20 26 30 0 0 chr13 21094745 21094778 -98650120 + AT_rich Low_complexity Low_complexity 1 33 0 2126 78 34 3 chr13 21095220 21095513 -98649385 - AluY SINE Alu -9 302 1 28 86 0 0 chr13 21095719 21095789 -98649109 + AT_rich Low_complexity Low_complexity 1 70 0 514 246 179 17 chr13 21096472 21096651 -98648247 - MIR SINE MIR -19 243 36 282 250 88 12 chr13 21097324 21097404 -98647494 + L2 LINE L2 2093 2178 -1136 22 0 0 0 chr13 21098322 21098344 -98646554 + AT_rich Low_complexity Low_complexity 1 22 0 369 192 92 23 chr13 21098373 21098503 -98646395 - L1MC5 LINE L1 -39 7922 7784 30 0 0 0 chr13 21098846 21098876 -98646022 + AT_rich Low_complexity Low_complexity 1 30 0 2178 71 0 3 chr13 21098876 21099195 -98645703 + AluY SINE Alu 1 318 0 2296 80 0 32 chr13 21099613 21099925 -98644973 + AluY SINE Alu 1 302 -9 2606 48 0 7 chr13 21100380 21100690 -98644208 - AluY SINE Alu -1 310 3 1064 250 113 46 chr13 21102231 21102666 -98642232 - L1ME3A LINE L1 -9 6161 5664 2534 68 0 6 chr13 21102666 21102977 -98641921 - AluY SINE Alu -2 309 1 1064 250 113 46 chr13 21102977 21103216 -98641682 - L1ME3A LINE L1 -506 5664 5442 338 251 145 51 chr13 21103392 21103624 -98641274 + MLT1G3 LTR MaLR 156 447 -108 870 251 163 44 chr13 21103784 21104256 -98640642 - MLT1G LTR MaLR 0 590 30 1077 155 0 0 chr13 21104509 21104670 -98640228 - AluSg/x SINE Alu -15 297 137 581 265 105 43 chr13 21104681 21105054 -98639844 - L1ME3A LINE L1 -1036 5110 4715 255 61 0 0 chr13 21105065 21105098 -98639800 + (CA)n Simple_repeat Simple_repeat 2 34 0 863 245 88 58 chr13 21105098 21105653 -98639245 - L1ME3A LINE L1 -1531 4615 4044 7308 53 7 47 chr13 21105831 21106820 -98638078 - SVA Other Other -3 1383 434 261 0 0 0 chr13 21106991 21107020 -98637878 + (GGGAGA)n Simple_repeat Simple_repeat 2 30 0 364 304 0 40 chr13 21107188 21107296 -98637602 + L2 LINE L2 3194 3298 -15 2247 100 0 3 chr13 21107296 21107597 -98637301 + AluY SINE Alu 1 300 -11 364 304 0 40 chr13 21107597 21107613 -98637285 + L2 LINE L2 3298 3313 0 692 11 11 0 chr13 21108838 21108925 -98635973 - L1PA3 LINE L1 0 6155 6068 1906 182 11 3 chr13 21109218 21109587 -98635311 - L1MB1 LINE L1 -103 6065 5694 272 172 10 91 chr13 21109593 21109692 -98635206 + L1MB1 LINE L1 5587 5677 -494 308 305 76 8 chr13 21109701 21109819 -98635079 - MIR SINE MIR -122 140 15 23 0 0 0 chr13 21110060 21110083 -98634815 + AT_rich Low_complexity Low_complexity 1 23 0 752 253 0 0 chr13 21110330 21110480 -98634418 - FRAM SINE Alu -16 150 1 2346 66 7 23 chr13 21110489 21110794 -98634104 - AluY SINE Alu -11 300 1 587 142 38 0 chr13 21111164 21111270 -98633628 - L1M3 LINE L1 -365 5803 5694 2456 70 0 0 chr13 21111749 21112050 -98632848 + AluY SINE Alu 1 301 -10 2964 200 16 8 chr13 21112919 21113627 -98631271 - L1MD2 LINE L1 -471 5888 5177 345 314 86 69 chr13 21113636 21113881 -98631017 + L1ME3 LINE L1 5618 5866 -296 359 31 31 155 chr13 21113897 21114058 -98630840 + (TATAA)n Simple_repeat Simple_repeat 4 144 0 336 48 0 0 chr13 21114497 21114539 -98630359 + (TGGA)n Simple_repeat Simple_repeat 3 44 0 2560 67 0 3 chr13 21114833 21115146 -98629752 - AluSq SINE Alu -1 312 1 2435 122 11 6 chr13 21115658 21116020 -98628878 + THE1B LTR MaLR 1 364 0 11102 95 33 2 chr13 21116020 21117552 -98627346 + THE1B-int LTR MaLR 1 1580 0 2569 114 0 8 chr13 21117552 21117919 -98626979 + THE1B LTR MaLR 1 364 0 649 158 73 43 chr13 21118102 21118266 -98626632 - MLT1E LTR MaLR -63 530 362 * 1507 199 13 10 chr13 21118258 21118569 -98626329 + MLT1A2 LTR MaLR 63 374 0 291 182 23 11 chr13 21118775 21118863 -98626035 + CT-rich Low_complexity Low_complexity 3 91 0 2478 68 3 0 chr13 21119437 21119745 -98625153 + AluY SINE Alu 2 310 -1 950 182 152 20 chr13 21120139 21120435 -98624463 + LTR54B LTR ERV1 3 337 -161 802 223 107 93 chr13 21120624 21121064 -98623834 - MER4C LTR ERV1 0 465 20 297 0 0 0 chr13 21121067 21121100 -98623798 + (TTTA)n Simple_repeat Simple_repeat 3 35 0 2042 111 4 0 chr13 21121100 21121379 -98623519 - AluSx SINE Alu -32 280 1 5873 145 45 91 chr13 21121380 21121781 -98623117 - LTR49-int LTR ERV1 -987 5344 4926 2424 69 0 7 chr13 21121781 21122087 -98622811 + AluY SINE Alu 1 304 -7 5873 145 45 91 chr13 21122087 21122130 -98622768 - LTR49-int LTR ERV1 -1405 4926 4883 2400 93 7 3 chr13 21122130 21122440 -98622458 + AluY SINE Alu 1 311 0 5873 145 45 91 chr13 21122440 21122537 -98622361 - LTR49-int LTR ERV1 -1448 4883 4783 2665 122 38 2 chr13 21122537 21122954 -98621944 - L1PA16 LINE L1 -9 6157 5726 5873 145 45 91 chr13 21122954 21123425 -98621473 - LTR49-int LTR ERV1 -1548 4783 4292 360 150 17 0 chr13 21123425 21123485 -98621413 + AluS SINE Alu 233 293 -7 5873 145 45 91 chr13 21123485 21123976 -98620922 - LTR49-int LTR ERV1 -2039 4292 3853 2216 112 13 0 chr13 21123976 21124279 -98620619 + AluSq SINE Alu 1 307 -6 5873 145 45 91 chr13 21124279 21124324 -98620574 - LTR49-int LTR ERV1 -2478 3853 3807 1201 99 17 28 chr13 21124324 21124505 -98620393 - 7SLRNA srpRNA srpRNA -9 311 133 2526 196 69 94 chr13 21124505 21125502 -98619396 - LTR49-int LTR ERV1 -1606 3274 2303 3883 30 17 0 chr13 21125505 21125978 -98618920 + LTR2B LTR ERV1 10 490 0 1136 227 42 73 chr13 21125978 21126538 -98618360 - LTR49-int LTR ERV1 -4263 3274 1580 462 222 26 98 chr13 21126507 21126660 -98618238 - LTR49-int LTR ERV1 -4146 2185 2044 * 1270 151 36 0 chr13 21126666 21126891 -98618007 + MER50 LTR ERV1 1 233 -501 1122 138 16 0 chr13 21127087 21127276 -98617622 + MER4B LTR ERV1 400 591 -19 786 85 53 116 chr13 21127276 21127465 -98617433 + PABL_A-int LTR ERV1 629 805 -4210 * 3619 73 93 41 chr13 21127462 21127661 -98617237 + PABL_A-int LTR ERV1 1803 1990 -4608 1985 124 22 38 chr13 21127661 21127976 -98616922 - AluSp SINE Alu -3 310 1 3619 73 93 41 chr13 21127976 21128435 -98616463 + PABL_A-int LTR ERV1 1990 2495 -4103 1064 145 90 10 chr13 21128435 21128635 -98616263 - LTR8 LTR ERV1 -434 257 42 910 83 8 0 chr13 21128635 21128756 -98616142 - AluSp SINE Alu -16 297 176 3703 60 43 0 chr13 21128756 21129226 -98615672 + LTR2B LTR ERV1 1 490 0 5360 92 58 19 chr13 21129226 21130085 -98614813 + Harlequin LTR ERV1 1 893 -6003 * 6364 63 46 0 chr13 21130080 21131038 -98613860 + Harlequin LTR ERV1 1572 2573 -4323 23068 112 11 9 chr13 21131039 21134572 -98610326 + Harlequin LTR ERV1 3353 6892 -4 3707 55 45 0 chr13 21134575 21135044 -98609854 + LTR2B LTR ERV1 1 490 0 352 105 35 0 chr13 21135044 21135101 -98609797 - AluSp SINE Alu -124 179 121 862 132 0 22 chr13 21135101 21135237 -98609661 - AluJo/FLAM SINE Alu -169 133 1 2284 90 0 82 chr13 21135237 21135283 -98609615 + MER4A-int LTR ERV1 2684 2732 -3866 2538 77 0 3 chr13 21135283 21135595 -98609303 - AluY SINE Alu 0 311 1 2284 90 0 82 chr13 21135595 21136037 -98608861 + MER4A-int LTR ERV1 2732 3132 -3466 8870 93 47 36 chr13 21136066 21136166 -98608732 + MER4A-int LTR ERV1 3453 3550 -3048 2058 94 7 7 chr13 21136166 21136452 -98608446 + AluY SINE Alu 1 286 -25 8870 93 47 36 chr13 21136452 21137968 -98606930 + MER4A-int LTR ERV1 3550 6598 0 281 125 375 14 chr13 21137970 21138042 -98606856 + MER4A LTR ERV1 1 98 -566 1864 120 8 46 chr13 21138042 21138400 -98606498 + MER4A LTR ERV1 262 664 0 * 2747 174 8 40 chr13 21138400 21138912 -98605986 + MER50 LTR ERV1 228 722 -12 220 200 0 0 chr13 21138983 21139038 -98605860 + (CAAA)n Simple_repeat Simple_repeat 2 56 0 430 244 43 43 chr13 21139038 21139184 -98605714 - MER41-int LTR ERV1 -3703 2243 2121 2440 113 86 60 chr13 21139281 21139734 -98605164 + MER4C LTR ERV1 1 465 0 321 185 62 0 chr13 21139759 21139824 -98605074 + LTR9 LTR ERV1 544 612 0 6561 157 114 75 chr13 21139824 21140589 -98604309 + LTR9-int LTR ERV1 283 1017 -5581 321 26 0 0 chr13 21140589 21140627 -98604271 + (TG)n Simple_repeat Simple_repeat 2 39 0 6561 157 114 75 chr13 21140627 21141420 -98603478 + LTR9-int LTR ERV1 1017 1995 -4603 2085 142 0 0 chr13 21141420 21141715 -98603183 + AluSx SINE Alu 1 295 -17 6561 157 114 75 chr13 21141715 21142226 -98602672 + LTR9-int LTR ERV1 1995 2485 -4113 416 45 80 0 chr13 21142389 21142477 -98602421 + GA-rich Low_complexity Low_complexity 2 96 0 3990 147 82 57 chr13 21143398 21143431 -98601467 + LTR9-int LTR ERV1 2924 2955 -3643 2253 99 3 0 chr13 21143431 21143724 -98601174 + AluY SINE Alu 1 294 -17 3990 147 82 57 chr13 21143724 21144724 -98600174 + LTR9-int LTR ERV1 2955 3983 -2615 4761 118 122 46 chr13 21144726 21146166 -98598732 - pTR5 LTR ERV1 0 2438 743 6761 139 56 50 chr13 21146166 21147553 -98597345 + LTR9-int LTR ERV1 3979 5357 -1241 408 20 0 0 chr13 21147553 21147602 -98597296 + (TA)n Simple_repeat Simple_repeat 2 50 0 1954 151 0 0 chr13 21147607 21147891 -98597007 - AluSx SINE Alu -28 284 1 6761 139 56 50 chr13 21147891 21147928 -98596970 + LTR9-int LTR ERV1 5360 5417 -1181 822 179 155 29 chr13 21147936 21148143 -98596755 + MER4C LTR ERV1 1 233 -232 3408 112 47 4 chr13 21148158 21148648 -98596250 + MER9 LTR ERVK 1 511 0 1061 62 0 0 chr13 21148648 21148778 -98596120 + HERVK9 LTR ERVK 1 130 -5786 697 255 60 39 chr13 21148790 21149166 -98595732 + MER4C LTR ERV1 141 465 0 641 167 35 21 chr13 21149251 21149395 -98595503 + MER4C-int LTR ERV1 109 254 -6344 226 213 21 0 chr13 21149580 21149627 -98595271 + LTR49 LTR ERV1 261 308 -287 544 174 84 58 chr13 21149649 21149804 -98595094 + MER4C-int LTR ERV1 995 1153 -5178 2655 223 30 15 chr13 21150075 21151936 -98592962 + L1MB8 LINE L1 2865 6169 -9 186 43 0 0 chr13 21151944 21151967 -98592931 + (CA)n Simple_repeat Simple_repeat 1 23 0 3188 271 32 36 chr13 21151975 21153066 -98591832 - MER110-int LTR ERV1 -1547 3100 2014 2199 189 62 77 chr13 21153082 21153184 -98591714 - MLT1A1-int LTR MaLR -1180 555 453 2434 100 3 0 chr13 21153184 21153494 -98591404 + AluSx SINE Alu 1 311 -1 2199 189 62 77 chr13 21153494 21153953 -98590945 - MLT1A1-int LTR MaLR -1282 453 2 979 188 139 102 chr13 21153954 21154306 -98590592 - MLT1A1 LTR MaLR 0 365 1 2465 94 0 0 chr13 21154899 21155208 -98589690 - AluSq SINE Alu -4 309 1 423 333 76 54 chr13 21155272 21155452 -98589446 - MER110-int LTR ERV1 -4121 526 351 1657 114 165 4 chr13 21155452 21155707 -98589191 + AluSx SINE Alu 1 296 -16 423 333 76 54 chr13 21155707 21155817 -98589081 - MER110-int LTR ERV1 -4296 351 245 2327 94 0 3 chr13 21155817 21156114 -98588784 - AluSc SINE Alu -13 296 1 423 333 76 54 chr13 21156114 21156230 -98588668 - MER110-int LTR ERV1 -4402 245 110 252 0 0 0 chr13 21156842 21156870 -98588028 + (A)n Simple_repeat Simple_repeat 1 28 0 722 161 8 16 chr13 21156885 21157009 -98587889 - THE1C LTR MaLR -252 123 1 7365 223 77 17 chr13 21157010 21159977 -98584921 + L1ME1 LINE L1 2894 6059 -107 2420 94 0 0 chr13 21159977 21160285 -98584613 - AluSg SINE Alu -2 308 1 7365 223 77 17 chr13 21160285 21160394 -98584504 + L1ME1 LINE L1 6059 6160 -6 230 301 96 19 chr13 21160411 21160567 -98584331 + L1M2 LINE L1 2290 2457 -4392 22 0 0 0 chr13 21160635 21160657 -98584241 + AT_rich Low_complexity Low_complexity 1 22 0 209 286 0 0 chr13 21161874 21161923 -98582975 + (TG)n Simple_repeat Simple_repeat 1 49 0 5530 147 43 11 chr13 21164452 21164929 -98579969 - L1MA5A LINE L1 -1 6296 5836 402 57 0 0 chr13 21164929 21164982 -98579916 + (TG)n Simple_repeat Simple_repeat 2 54 0 5530 147 43 11 chr13 21164982 21165558 -98579340 - L1MA5A LINE L1 -461 5836 5209 1367 172 4 4 chr13 21165543 21165804 -98579094 + L1MA5A LINE L1 4963 5223 -923 * 812 282 176 33 chr13 21166094 21167533 -98577365 + L1ME2 LINE L1 3953 5593 -743 185 255 43 0 chr13 21167559 21167606 -98577292 - L2 LINE L2 -16 3297 3249 306 270 40 32 chr13 21167756 21167882 -98577016 + L1ME2 LINE L1 5758 5884 -280 5452 54 4 16 chr13 21168224 21168581 -98576317 + L1PA7 LINE L1 5472 5819 -335 2432 91 0 0 chr13 21168581 21168888 -98576010 + AluY SINE Alu 1 307 -4 5452 54 4 16 chr13 21168888 21169216 -98575682 + L1PA7 LINE L1 5819 6149 -5 21 0 0 0 chr13 21169216 21169237 -98575661 + AT_rich Low_complexity Low_complexity 1 21 0 482 281 104 58 chr13 21169330 21169457 -98575441 + L1MC3 LINE L1 4027 4147 -1999 1603 189 3 22 chr13 21169457 21169770 -98575128 + AluJo SINE Alu 1 307 -5 482 281 104 58 chr13 21169770 21170247 -98574651 + L1MC3 LINE L1 4147 4659 -1487 238 360 61 19 chr13 21170520 21170734 -98574164 + L1MC3 LINE L1 5376 5598 -523 269 289 30 30 chr13 21170942 21171077 -98573821 + L1MC3 LINE L1 5800 5934 -1874 3736 157 36 22 chr13 21172558 21173246 -98571652 - ERVL-B2 LTR ERVL -1634 4130 3433 6539 155 35 21 chr13 21173253 21173811 -98571087 - ERVL-B2 LTR ERVL -2909 2855 2307 1542 141 131 20 chr13 21173811 21174116 -98570782 + MER44D DNA MER2_type 1 609 0 6539 155 35 21 chr13 21174116 21174663 -98570235 - ERVL-B2 LTR ERVL -3457 2307 1734 866 213 0 0 chr13 21174663 21174813 -98570085 - FRAM SINE Alu -25 151 2 7974 199 68 10 chr13 21174813 21176468 -98568430 - ERVL-B2 LTR ERVL -4013 1751 2 2288 181 138 7 chr13 21176473 21176511 -98568387 - MLT2B2 LTR ERVL -8 507 475 210 91 0 0 chr13 21176511 21176544 -98568354 + (TA)n Simple_repeat Simple_repeat 2 34 0 2288 181 138 7 chr13 21176544 21176953 -98567945 - MLT2B2 LTR ERVL -40 475 1 270 0 0 0 chr13 21178906 21178936 -98565962 + (TG)n Simple_repeat Simple_repeat 2 31 0 1418 162 53 43 chr13 21179351 21179510 -98565388 - MLT1A2 LTR MaLR -56 318 153 225 0 0 0 chr13 21179510 21179535 -98565363 + (GA)n Simple_repeat Simple_repeat 1 25 0 1418 162 53 43 chr13 21179535 21179677 -98565221 - MLT1A2 LTR MaLR -221 153 14 952 117 5 126 chr13 21179852 21179888 -98565010 + MER53 DNA DNA 2 41 -148 2089 126 0 0 chr13 21179888 21180174 -98564724 + AluSq SINE Alu 1 286 -27 952 117 5 126 chr13 21180174 21180351 -98564547 + MER53 DNA DNA 41 189 0 391 99 10 59 chr13 21180457 21180558 -98564340 + (TTTC)n Simple_repeat Simple_repeat 2 97 0 180 0 0 0 chr13 21181435 21181455 -98563443 + (TTGTG)n Simple_repeat Simple_repeat 3 22 0 6291 219 46 13 chr13 21181605 21182540 -98562358 + L1MC3 LINE L1 6223 7229 -556 2365 146 36 31 chr13 21182540 21182986 -98561912 - MER83 LTR ERV1 0 448 1 6291 219 46 13 chr13 21182986 21183563 -98561335 + L1MC3 LINE L1 7229 7785 0 233 121 0 0 chr13 21184658 21184691 -98560207 + MER94 DNA DNA 8 40 -94 389 217 58 50 chr13 21184709 21184829 -98560069 - L1MC4 LINE L1 0 8042 7922 254 313 22 37 chr13 21184836 21184970 -98559928 - L1MC4 LINE L1 -218 7824 7693 753 223 0 0 chr13 21184990 21185129 -98559769 - AluJb SINE Alu -37 275 137 1338 182 88 61 chr13 21185213 21185441 -98559457 - MER66B LTR ERV1 0 486 243 1979 129 0 62 chr13 21185441 21185750 -98559148 - AluSx SINE Alu -18 294 5 1338 182 88 61 chr13 21185750 21185883 -98559015 - MER66B LTR ERV1 -243 243 115 1168 178 50 0 chr13 21185897 21186099 -98558799 + MSTB LTR MaLR 215 426 0 241 235 59 10 chr13 21186749 21186851 -98558047 + MLT1D LTR MaLR 264 370 -135 191 254 14 28 chr13 21187951 21188022 -98556876 + L2 LINE L2 3126 3195 -77 1824 113 88 52 chr13 21189449 21189811 -98555087 + THE1C LTR MaLR 1 375 0 188 209 0 0 chr13 21194009 21194052 -98550846 + MIR SINE MIR 100 142 -120 280 209 0 75 chr13 21194087 21194154 -98550744 - L1MB7 LINE L1 -61 6123 6062 779 248 46 32 chr13 21194266 21194548 -98550350 - L1MB7 LINE L1 -80 6104 5819 403 173 22 32 chr13 21194582 21194683 -98550215 - L1MB7 LINE L1 -586 5585 5485 1131 98 0 0 chr13 21194851 21195014 -98549884 + (TTCC)n Simple_repeat Simple_repeat 3 165 0 718 209 4 8 chr13 21195029 21195265 -98549633 + CT-rich Low_complexity Low_complexity 1 235 0 815 190 29 0 chr13 21195268 21195442 -98549456 - L1MB7 LINE L1 -707 5467 5289 384 220 40 0 chr13 21196360 21196460 -98548438 - MIR SINE MIR -79 183 80 1102 264 34 3 chr13 21196505 21196854 -98548044 - MLT1A1 LTR MaLR -2 363 4 333 174 0 14 chr13 21197809 21197878 -98547020 + MLT1E1 LTR MaLR 185 252 -402 777 248 40 56 chr13 21198791 21198903 -98545995 + MLT1B LTR MaLR 93 205 -185 267 31 0 0 chr13 21198903 21198935 -98545963 + (CA)n Simple_repeat Simple_repeat 1 32 0 777 248 40 56 chr13 21198935 21199125 -98545773 + MLT1B LTR MaLR 205 390 0 328 302 80 31 chr13 21199125 21199491 -98545407 - L1ME LINE L1 -484 5637 5258 2058 117 6 46 chr13 21199534 21199860 -98545038 - AluSq SINE Alu 0 313 1 351 216 86 73 chr13 21199996 21200194 -98544704 - L1MB7 LINE L1 -1057 5089 4886 420 256 0 0 chr13 21200530 21200620 -98544278 - LTR33A LTR ERVL 0 523 434 321 267 13 0 chr13 21200829 21200904 -98543994 - LTR33 LTR ERVL -343 178 103 229 233 78 78 chr13 21201192 21201282 -98543616 - L1MB7 LINE L1 -1959 4187 4098 499 297 112 51 chr13 21201458 21201906 -98542992 - REP3 LTR ERV -87 475 1 482 252 109 46 chr13 21201932 21202234 -98542664 - L1MB7 LINE L1 -2153 3993 3673 7799 211 43 33 chr13 21202392 21204565 -98540333 - L1MB8 LINE L1 -6 6408 4191 2050 146 0 0 chr13 21204565 21204859 -98540039 - AluSg SINE Alu -16 294 1 7799 211 43 33 chr13 21204859 21205735 -98539163 - L1MB8 LINE L1 -2223 4191 3325 1038 276 39 3 chr13 21205891 21206228 -98538670 - L1MB8 LINE L1 -4536 1848 1500 2351 171 29 113 chr13 21206238 21206922 -98537976 + MER4E LTR ERV1 18 644 -135 2061 127 146 6 chr13 21206922 21207284 -98537614 - MER9 LTR ERVK 0 511 99 725 185 7 34 chr13 21207293 21207439 -98537459 + MER4D LTR ERV1 762 903 0 1464 258 33 0 chr13 21207440 21207859 -98537039 - L1MB8 LINE L1 -4906 1478 1046 1633 170 7 0 chr13 21207863 21208133 -98536765 + L1MC3 LINE L1 6684 6955 -830 1446 96 4 123 chr13 21208153 21208413 -98536485 + AluSc SINE Alu 73 301 -8 248 139 28 28 chr13 21208432 21208504 -98536394 + (TA)n Simple_repeat Simple_repeat 2 73 0 3593 208 37 46 chr13 21208921 21209284 -98535614 + L1M3 LINE L1 4327 4692 -1491 2353 107 0 0 chr13 21209284 21209584 -98535314 - AluSg SINE Alu -10 300 1 3593 208 37 46 chr13 21209584 21210492 -98534406 + L1M3 LINE L1 4692 5592 -591 523 158 47 0 chr13 21211265 21211375 -98533523 + MER61E LTR ERV1 1 118 -484 236 175 175 0 chr13 21211542 21211599 -98533299 + MER51A LTR ERV1 209 275 -359 * 1144 172 111 14 chr13 21211576 21211930 -98532968 + LTR25 LTR ERV1 397 569 0 328 324 87 18 chr13 21211958 21212177 -98532721 + MIR SINE MIR 13 246 -16 477 0 0 0 chr13 21212467 21212520 -98532378 + (TTTTA)n Simple_repeat Simple_repeat 3 55 0 248 204 21 43 chr13 21213643 21213736 -98531162 + L1ME4a LINE L1 5872 5962 -159 25 95 0 0 chr13 21213881 21213955 -98530943 + AT_rich Low_complexity Low_complexity 1 74 0 1132 284 108 39 chr13 21213975 21214346 -98530552 + L1M4 LINE L1 2340 2684 -3462 1971 138 0 10 chr13 21214346 21214643 -98530255 - AluSx SINE Alu -18 294 1 1132 284 108 39 chr13 21214643 21215405 -98529493 + L1M4 LINE L1 2684 3583 -2563 2144 112 20 0 chr13 21215405 21215699 -98529199 - AluSx SINE Alu -12 300 1 1132 284 108 39 chr13 21215699 21215910 -98528988 + L1M4 LINE L1 3583 3778 -2368 371 220 144 3 chr13 21216973 21217088 -98527810 + MER97a DNA MER1_type? 44 169 -725 203 253 70 70 chr13 21217148 21217239 -98527659 - MIR SINE MIR -99 163 70 2273 157 49 53 chr13 21217239 21217691 -98527207 + LTR47A LTR ERVL 1 450 -2 203 253 70 70 chr13 21217691 21217757 -98527141 - MIR SINE MIR -191 71 6 1492 216 113 30 chr13 21218754 21219180 -98525718 - MLT1C LTR MaLR 0 467 7 23 33 0 0 chr13 21219689 21219719 -98525179 + AT_rich Low_complexity Low_complexity 1 30 0 2251 113 7 3 chr13 21219912 21220222 -98524676 - AluSx SINE Alu -1 311 1 1317 169 42 122 chr13 21220574 21220958 -98523940 + MLT1A1 LTR MaLR 1 353 -12 2175 103 0 34 chr13 21221606 21221927 -98522971 + AluSg SINE Alu 1 310 0 27 0 0 0 chr13 21221940 21221967 -98522931 + AT_rich Low_complexity Low_complexity 1 27 0 196 225 0 0 chr13 21222237 21222277 -98522621 - MIR SINE MIR -26 236 197 381 203 16 23 chr13 21222444 21222572 -98522326 + CT-rich Low_complexity Low_complexity 5 131 0 2612 68 0 0 chr13 21222600 21222911 -98521987 - AluY SINE Alu 0 311 1 1041 303 33 23 chr13 21222911 21223764 -98521134 - L1M4c LINE L1 -3926 2746 1747 2863 219 18 58 chr13 21223776 21223839 -98521059 - L1M4c LINE L1 -5007 1535 1471 2054 134 23 0 chr13 21223839 21224138 -98520760 - AluSx SINE Alu -6 306 1 2863 219 18 58 chr13 21224138 21224973 -98519925 - L1M4c LINE L1 -5071 1471 673 2299 74 3 10 chr13 21224975 21225274 -98519624 + AluY SINE Alu 1 297 -14 391 279 10 10 chr13 21225376 21225480 -98519418 - L1M4c LINE L1 -5891 651 548 195 129 0 0 chr13 21225480 21225511 -98519387 + (TCCC)n Simple_repeat Simple_repeat 3 33 0 2498 56 0 31 chr13 21225555 21225875 -98519023 - AluY SINE Alu -1 310 1 2269 92 3 0 chr13 21225885 21226218 -98518680 - AluSp SINE Alu 0 334 1 244 184 0 0 chr13 21227023 21227061 -98517837 + tRNA-Arg-AGA tRNA tRNA 1 38 -38 258 271 49 95 chr13 21227063 21227591 -98517307 + L1ME4a LINE L1 5609 6112 -9 2425 55 41 0 chr13 21228393 21228685 -98516213 + AluY SINE Alu 1 304 -7 275 270 146 30 chr13 21228738 21228971 -98515927 - LTR48 LTR ERV1 -6 781 522 324 70 0 0 chr13 21229123 21229166 -98515732 + (TA)n Simple_repeat Simple_repeat 2 44 0 311 280 59 8 chr13 21229285 21229403 -98515495 - LTR48B LTR ERV1 -380 264 141 299 231 15 0 chr13 21229429 21229494 -98515404 - MER34 LTR ERV1 -452 90 25 181 0 69 0 chr13 21229541 21229570 -98515328 + (CAAA)n Simple_repeat Simple_repeat 4 34 0 2451 152 52 2 chr13 21230632 21231040 -98513858 - MSTA LTR MaLR 0 428 1 297 188 38 75 chr13 21231261 21231341 -98513557 - MER2 DNA MER2_type -1 344 268 1211 149 45 0 chr13 21231367 21231568 -98513330 - MER2 DNA MER2_type -135 210 1 241 262 60 0 chr13 21232281 21232365 -98512533 - MIR SINE MIR -93 169 81 1039 134 120 49 chr13 21233260 21233544 -98511354 - L1MA8 LINE L1 -5 6286 5983 234 244 37 73 chr13 21233660 21233703 -98511195 + MER57B LTR ERV1 312 351 -83 1329 244 103 44 chr13 21233703 21234157 -98510741 - LTR26E LTR ERV1 0 608 123 2294 95 7 0 chr13 21234164 21234470 -98510428 + AluY SINE Alu 1 308 -3 181 204 91 0 chr13 21235293 21235337 -98509561 - L2 LINE L2 -15 3298 3251 * 205 296 52 87 chr13 21235303 21235359 -98509539 - MIR SINE MIR -23 239 183 1755 153 7 23 chr13 21235359 21235660 -98509238 + AluSx SINE Alu 1 296 -16 205 296 52 87 chr13 21235660 21235775 -98509123 - MIR SINE MIR -79 183 74 1613 195 118 8 chr13 21236006 21236370 -98508528 + MLT2B3 LTR ERVL 4 407 -147 5493 52 33 13 chr13 21236379 21236997 -98507901 + MER11D LTR ERVK 1 636 -261 2928 19 0 0 chr13 21236997 21237314 -98507584 + AluYb8 SINE Alu 1 317 -1 5493 52 33 13 chr13 21237314 21237383 -98507515 + MER11D LTR ERVK 636 702 -195 1989 140 3 22 chr13 21240773 21241088 -98503810 + AluSc SINE Alu 1 309 0 366 313 133 17 chr13 21241272 21241505 -98503393 - L1MC/D LINE L1 -521 5641 5383 2410 122 49 35 chr13 21241855 21242281 -98502617 - MSTB1 LTR MaLR 0 432 1 22 56 0 0 chr13 21243064 21243100 -98501798 + AT_rich Low_complexity Low_complexity 1 36 0 2386 95 0 7 chr13 21243183 21243489 -98501409 + AluSx SINE Alu 3 306 -6 21 0 0 0 chr13 21244202 21244223 -98500675 + AT_rich Low_complexity Low_complexity 1 21 0 2169 137 116 18 chr13 21244510 21244898 -98500000 - MSTA LTR MaLR -2 426 1 226 318 0 18 chr13 21246037 21246147 -98498751 + L1MDa LINE L1 1267 1374 -5166 273 196 21 10 chr13 21246177 21246274 -98498624 + (TA)n Simple_repeat Simple_repeat 1 98 0 381 305 62 22 chr13 21246289 21246565 -98498333 + L1MDa LINE L1 1451 1782 -4885 2649 196 112 6 chr13 21246629 21247288 -98497610 - L1MB7 LINE L1 -9 6175 5447 28 0 0 0 chr13 21247341 21247369 -98497529 + AT_rich Low_complexity Low_complexity 1 28 0 2128 134 0 0 chr13 21247530 21247829 -98497069 + AluSx SINE Alu 2 300 -12 715 135 28 17 chr13 21248201 21248379 -98496519 + (TG)n Simple_repeat Simple_repeat 1 180 0 2377 75 3 3 chr13 21249475 21249782 -98495116 - AluY SINE Alu -4 307 1 1128 141 33 38 chr13 21250469 21250682 -98494216 + MSTC LTR MaLR 1 212 -216 22 56 0 0 chr13 21251392 21251428 -98493470 + AT_rich Low_complexity Low_complexity 1 36 0 22 35 0 0 chr13 21251614 21251643 -98493255 + AT_rich Low_complexity Low_complexity 1 29 0 25 65 0 0 chr13 21251958 21252004 -98492894 + AT_rich Low_complexity Low_complexity 1 46 0 532 301 117 8 chr13 21252273 21252522 -98492376 + L1MEc LINE L1 47 322 -6074 369 277 19 25 chr13 21252542 21252701 -98492197 + L1MEc LINE L1 362 519 -5877 3390 61 16 0 chr13 21253087 21253511 -98491387 - MER11B LTR ERVK -805 431 1 9654 190 30 8 chr13 21253513 21255519 -98489379 + L1PA15 LINE L1 3054 5149 -1016 2253 114 140 8 chr13 21255519 21255897 -98489001 + MSTA LTR MaLR 1 428 0 9654 190 30 8 chr13 21255897 21256933 -98487965 + L1PA15 LINE L1 5149 6161 -4 2168 182 26 5 chr13 21256929 21257357 -98487541 + L1MC3 LINE L1 5461 5897 -1888 * 1319 341 51 58 chr13 21257381 21258805 -98486093 + ERVL LTR ERVL 3915 5328 -436 2343 71 7 14 chr13 21259110 21259404 -98485494 - AluY SINE Alu -15 296 5 744 318 87 7 chr13 21259516 21259802 -98485096 + LTR16A1 LTR ERVL 148 456 -1 3819 93 2 8 chr13 21260115 21260629 -98484269 - MER9 LTR ERVK 0 511 1 2416 99 5 4 chr13 21260629 21260966 -98483932 - HERVK9 LTR ERVK 0 5916 4922 7865 96 4 6 chr13 21261007 21262063 -98482835 - HERVK9 LTR ERVK -282 5634 4581 1829 64 0 9 chr13 21262061 21262294 -98482604 - HERVK9 LTR ERVK -1975 3941 3711 * 11451 60 0 1 chr13 21262294 21263665 -98481233 - HERVK9 LTR ERVK -3130 2786 1417 257 310 78 0 chr13 21264247 21264363 -98480535 - MIR SINE MIR -67 195 71 566 285 109 0 chr13 21264437 21264602 -98480296 - MER5A DNA MER1_type 0 189 7 1795 142 43 13 chr13 21264759 21265061 -98479837 - AluSx SINE Alu -1 311 1 1215 184 49 0 chr13 21266773 21267017 -98477881 - L1MA9 LINE L1 -38 6274 6019 2060 156 56 67 chr13 21267388 21267618 -98477280 - MSTB LTR MaLR 0 426 202 2337 96 0 3 chr13 21267618 21267919 -98476979 - AluSg SINE Alu -10 300 1 2060 156 56 67 chr13 21267919 21268119 -98476779 - MSTB LTR MaLR -224 202 1 3021 63 7 85 chr13 21269197 21269657 -98475241 + HERVK9 LTR ERVK 145 568 -5348 2055 90 0 14 chr13 21269658 21269947 -98474951 + HERVK9 LTR ERVK 1113 1397 -4519 1312 160 9 5 chr13 21272725 21272937 -98471961 - pTR5 LTR ERV1 -2045 393 181 253 314 48 0 chr13 21272939 21273044 -98471854 - LTR30 LTR ERV1 -69 653 544 4011 176 81 38 chr13 21273048 21274015 -98470883 - pTR5 LTR ERV1 -417 2021 740 186 145 0 53 chr13 21277305 21277381 -98467517 + (GAATG)n Simple_repeat Simple_repeat 3 74 0 204 245 0 0 chr13 21278860 21278909 -98465989 + T-rich Low_complexity Low_complexity 1 49 0 210 200 40 0 chr13 21279505 21279555 -98465343 + L2 LINE L2 3221 3272 0 249 301 126 10 chr13 21279738 21279841 -98465057 - L1MC4 LINE L1 -1 8041 7927 561 326 100 41 chr13 21280823 21281049 -98463849 - L1M4 LINE L1 -838 5308 5097 2131 120 40 0 chr13 21281049 21281349 -98463549 + AluSx SINE Alu 1 312 0 561 326 100 41 chr13 21281349 21282283 -98462615 - L1M4 LINE L1 -1049 5097 4080 1470 77 15 5 chr13 21482528 21482723 -98262175 - AluY SINE Alu -114 197 1 491 266 85 53 chr13 21482737 21483056 -98261842 + L1ME4a LINE L1 5548 5876 -245 2285 80 3 0 chr13 21483066 21483354 -98261544 + AluY SINE Alu 19 307 -4 2191 101 11 0 chr13 21483801 21484088 -98260810 + AluSg SINE Alu 1 290 -20 22 0 0 0 chr13 21485477 21485499 -98259399 + AT_rich Low_complexity Low_complexity 1 22 0 212 189 0 0 chr13 21485773 21485810 -98259088 + T-rich Low_complexity Low_complexity 1 37 0 303 239 11 22 chr13 21486995 21487087 -98257811 + G-rich Low_complexity Low_complexity 6 96 0 24 77 0 0 chr13 21487817 21487869 -98257029 + AT_rich Low_complexity Low_complexity 1 52 0 796 263 134 88 chr13 21488014 21488538 -98256360 - L1ME3A LINE L1 -4 6166 5619 919 199 42 48 chr13 21488611 21488898 -98256000 - MLT1A1 LTR MaLR -2 363 1 2240 104 7 3 chr13 21489534 21489833 -98255065 - AluSq SINE Alu -13 300 1 254 269 15 0 chr13 21489910 21489977 -98254921 + L2 LINE L2 2943 3010 -262 2256 86 0 17 chr13 21490083 21490385 -98254513 - AluY SINE Alu -14 297 1 227 73 49 0 chr13 21490436 21490477 -98254421 + (CTAAT)n Simple_repeat Simple_repeat 4 46 0 7651 133 91 93 chr13 21492594 21494295 -98250603 - pTR5 LTR ERV1 0 2438 743 2087 130 0 0 chr13 21495241 21495533 -98249365 - AluSg SINE Alu -18 292 1 757 139 0 36 chr13 21495853 21495990 -98248908 + FLAM_C SINE Alu 12 143 0 2259 180 49 14 chr13 21496309 21496754 -98248144 - LOR1b LTR ERV1 0 461 1 1079 76 0 0 chr13 21497372 21497504 -98247394 + AluY SINE Alu 1 132 -179 2183 79 58 0 chr13 21497507 21497798 -98247100 + AluY SINE Alu 1 308 -3 2284 75 37 3 chr13 21498021 21498316 -98246582 + AluY SINE Alu 1 305 -6 207 0 0 0 chr13 21498334 21498357 -98246541 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 311 0 0 25 chr13 21499252 21499292 -98245606 + (TAAA)n Simple_repeat Simple_repeat 2 40 0 2073 48 48 0 chr13 21499297 21499546 -98245352 + AluY SINE Alu 2 262 -49 262 306 57 38 chr13 21499951 21500286 -98244612 - L1MDa LINE L1 -749 2152 1803 189 309 75 21 chr13 21500493 21500587 -98244311 - MIR SINE MIR -109 153 55 1974 218 81 31 chr13 21500761 21502080 -98242818 - L1ME2 LINE L1 -55 6109 4589 341 302 168 22 chr13 21502096 21502645 -98242253 + L1ME LINE L1 4572 5200 -946 27 73 0 0 chr13 21502669 21502724 -98242174 + AT_rich Low_complexity Low_complexity 1 55 0 366 260 97 32 chr13 21502822 21502976 -98241922 + MLT1G1 LTR MaLR 16 179 -416 695 276 144 29 chr13 21502976 21503386 -98241512 + L1ME LINE L1 5338 5794 -368 248 264 14 114 chr13 21503419 21503559 -98241339 - MIR SINE MIR -18 244 119 182 242 0 0 chr13 21504020 21504053 -98240845 + L2 LINE L2 3265 3297 -16 548 286 161 43 chr13 21504411 21504874 -98240024 - L2 LINE L2 -49 3264 2743 1550 206 37 42 chr13 21504882 21505261 -98239637 + MLT1B LTR MaLR 3 379 -11 1780 285 160 28 chr13 21505285 21506216 -98238682 - L2 LINE L2 -590 2724 1671 319 289 252 7 chr13 21506370 21506549 -98238349 + MIR SINE MIR 37 256 -6 213 211 14 28 chr13 21507185 21507256 -98237642 + (TA)n Simple_repeat Simple_repeat 1 70 0 2460 81 0 3 chr13 21508103 21508410 -98236488 - AluSc SINE Alu -3 306 1 22 35 0 0 chr13 21508425 21508454 -98236444 + AT_rich Low_complexity Low_complexity 1 29 0 228 182 23 0 chr13 21508646 21508690 -98236208 - L2 LINE L2 -1 3312 3268 2448 88 0 3 chr13 21509054 21509360 -98235538 - AluSp SINE Alu -8 305 1 2464 226 86 42 chr13 21509364 21510059 -98234839 - MER21B LTR ERV1 -137 726 1 255 219 154 73 chr13 21510085 21510208 -98234690 + L2 LINE L2 3137 3269 -3 2448 57 0 7 chr13 21510341 21510638 -98234260 - AluY SINE Alu -16 295 1 23 33 0 0 chr13 21511179 21511209 -98233689 + AT_rich Low_complexity Low_complexity 1 30 0 2574 99 14 0 chr13 21511297 21511641 -98233257 + L1PB1 LINE L1 5801 6149 -2 191 358 117 8 chr13 21512964 21513084 -98231814 - MIR SINE MIR -60 148 16 424 211 100 11 chr13 21513507 21513597 -98231301 - LTR12 LTR ERV1 -2 712 615 1648 142 53 114 chr13 21513599 21514030 -98230868 - LTR12 LTR ERV1 -309 405 1 306 209 20 37 chr13 21515292 21515377 -98229521 + MIR SINE MIR 34 121 -87 28 0 0 0 chr13 21515867 21515895 -98229003 + AT_rich Low_complexity Low_complexity 1 28 0 182 189 108 68 chr13 21516489 21516563 -98228335 + L2 LINE L2 2676 2752 -562 326 329 123 58 chr13 21516770 21517095 -98227803 + L2 LINE L2 2921 3266 -6 204 67 0 0 chr13 21517376 21517406 -98227492 + (TG)n Simple_repeat Simple_repeat 2 31 0 2105 130 10 0 chr13 21517571 21517871 -98227027 + AluSx SINE Alu 1 303 -9 2166 130 3 0 chr13 21517879 21518179 -98226719 + AluSx SINE Alu 1 301 -11 2325 101 0 0 chr13 21518187 21518484 -98226414 + AluSq SINE Alu 1 297 -16 2248 97 7 10 chr13 21518485 21518794 -98226104 + AluSc SINE Alu 2 309 0 2087 138 16 0 chr13 21521738 21522043 -98222855 - AluSg SINE Alu 0 310 1 2114 88 53 3 chr13 21522163 21522446 -98222452 - AluY SINE Alu -14 297 1 337 299 76 7 chr13 21522891 21523035 -98221863 - L2 LINE L2 -61 3252 3099 1259 271 46 51 chr13 21525020 21525382 -98219516 + L2 LINE L2 2427 2789 -524 1696 154 3 74 chr13 21525382 21525706 -98219192 - AluJo SINE Alu -9 303 3 1259 271 46 51 chr13 21525706 21526155 -98218743 + L2 LINE L2 2789 3232 -81 1091 220 26 111 chr13 21526199 21526585 -98218313 - MLT1A1 LTR MaLR 0 365 13 2274 60 3 3 chr13 21527077 21527382 -98217516 - AluY SINE Alu 0 305 1 262 277 9 18 chr13 21527998 21528110 -98216788 + GA-rich Low_complexity Low_complexity 2 112 0 499 137 0 0 chr13 21528379 21528452 -98216446 - AluSx SINE Alu -16 293 221 1435 144 14 0 chr13 21528532 21528747 -98216151 - AluSx SINE Alu -94 218 1 28 48 0 0 chr13 21528754 21528796 -98216102 + AT_rich Low_complexity Low_complexity 1 42 0 229 361 14 0 chr13 21529051 21529123 -98215775 + MIR SINE MIR 39 111 -97 2144 117 0 32 chr13 21530264 21530580 -98214318 - AluSx SINE Alu -6 306 1 362 333 74 0 chr13 21530771 21530906 -98213992 + MIR SINE MIR 21 165 -97 187 259 103 0 chr13 21531000 21531058 -98213840 + MIR SINE MIR 187 250 -12 2729 36 0 0 chr13 21531541 21531850 -98213048 + AluY SINE Alu 1 309 -2 518 316 111 21 chr13 21532420 21532981 -98211917 - L2 LINE L2 -54 3259 2636 304 314 98 20 chr13 21533068 21533170 -98211728 - L2 LINE L2 -20 3252 3143 192 40 0 0 chr13 21534206 21534231 -98210667 + (CA)n Simple_repeat Simple_repeat 2 26 0 264 59 0 0 chr13 21534254 21534288 -98210610 + (TG)n Simple_repeat Simple_repeat 2 35 0 588 333 74 20 chr13 21534302 21534693 -98210205 + L1M4 LINE L1 2701 3112 -3034 763 276 71 4 chr13 21534712 21534937 -98209961 + MIR SINE MIR 20 259 -3 192 77 0 0 chr13 21534976 21535002 -98209896 + (TTTTA)n Simple_repeat Simple_repeat 4 29 0 2072 65 4 11 chr13 21535004 21535267 -98209631 - AluY SINE Alu -17 294 34 1897 114 4 0 chr13 21535405 21535668 -98209230 - AluY SINE Alu -47 264 1 531 280 71 21 chr13 21535714 21536039 -98208859 + L1M4 LINE L1 4634 4974 -1172 664 298 53 26 chr13 21536039 21536267 -98208631 - L2 LINE L2 -1385 1929 1696 308 277 53 0 chr13 21536310 21536404 -98208494 - L2 LINE L2 -1605 1709 1611 987 286 121 54 chr13 21536404 21536809 -98208089 - L2 LINE L2 -2636 678 247 215 294 0 0 chr13 21536819 21536870 -98208028 - L2 LINE L2 -3186 128 78 561 301 75 38 chr13 21537369 21537767 -98207131 - MLT1J2 LTR MaLR -37 413 1 2258 68 57 0 chr13 21537947 21538227 -98206671 + AluY SINE Alu 1 296 -15 3410 141 30 7 chr13 21538424 21538998 -98205900 - L1PA15 LINE L1 -1 6164 5578 21 71 0 0 chr13 21539182 21539224 -98205674 + AT_rich Low_complexity Low_complexity 1 42 0 1067 259 94 2 chr13 21539280 21539778 -98205120 + MER114 LTR ERV 22 565 -83 233 221 143 13 chr13 21539806 21539883 -98205015 - MIR SINE MIR -98 164 78 390 101 101 0 chr13 21539955 21540024 -98204874 - LTR12 LTR ERV1 -288 426 351 242 155 14 99 chr13 21540026 21540097 -98204801 - LTR30 LTR ERV1 -108 614 550 1048 116 233 5 chr13 21540097 21540312 -98204586 - LTR12 LTR ERV1 -450 264 1 233 398 0 0 chr13 21540836 21540949 -98203949 - MIR SINE MIR -66 142 30 2057 148 43 6 chr13 21541401 21541753 -98203145 - MLT1A1 LTR MaLR 0 365 1 1469 114 18 35 chr13 21542112 21542339 -98202559 - AluSg/x SINE Alu -11 299 77 1917 243 90 29 chr13 21543334 21543509 -98201389 - L1ME2 LINE L1 -16 6148 5985 2184 113 13 0 chr13 21543509 21543810 -98201088 - AluSq SINE Alu -8 305 1 1917 243 90 29 chr13 21543810 21544465 -98200433 - L1ME2 LINE L1 -179 5985 5254 632 137 73 8 chr13 21544484 21544608 -98200290 - MLT1D LTR MaLR -5 500 369 2246 114 3 0 chr13 21544619 21544925 -98199973 - AluSx SINE Alu -5 307 1 298 174 23 12 chr13 21544934 21545020 -98199878 - L1ME2 LINE L1 -981 5165 5079 1483 267 69 6 chr13 21545056 21545719 -98199179 - L1M4 LINE L1 -3191 2955 2251 2216 75 0 3 chr13 21546004 21546339 -98198559 - AluY SINE Alu 0 334 1 2255 57 54 3 chr13 21546852 21547148 -98197750 + AluY SINE Alu 1 311 0 2480 90 0 0 chr13 21547416 21547717 -98197181 + AluSq SINE Alu 1 301 -12 2168 133 0 0 chr13 21549418 21549719 -98195179 - AluSx SINE Alu -11 301 1 785 198 6 18 chr13 21549805 21549972 -98194926 - MER20 DNA MER1_type -54 165 1 949 249 105 32 chr13 21550080 21550707 -98194191 - Charlie2a DNA MER1_type -1174 1688 1016 247 376 38 55 chr13 21550747 21550935 -98193963 - L2 LINE L2 -445 2869 2686 2597 33 0 3 chr13 21550935 21551234 -98193664 + AluY SINE Alu 1 298 -13 247 376 38 55 chr13 21551234 21551335 -98193563 - L2 LINE L2 -628 2686 2585 262 303 111 49 chr13 21551339 21551652 -98193246 - L2 LINE L2 -1001 2313 1974 3734 122 30 38 chr13 21551652 21551946 -98192952 + MER39B LTR ERV1 1 296 -357 2282 73 0 23 chr13 21551946 21552247 -98192651 + AluY SINE Alu 1 294 -17 3734 122 30 38 chr13 21552247 21552610 -98192288 + MER39B LTR ERV1 296 653 0 262 303 111 49 chr13 21552610 21552646 -98192252 - L2 LINE L2 -1340 1974 1942 2391 80 0 10 chr13 21552755 21553069 -98191829 - AluY SINE Alu 0 311 1 328 211 144 39 chr13 21553839 21553943 -98190955 - MIR3 SINE MIR -31 177 63 546 199 199 50 chr13 21554516 21554737 -98190161 - MIR SINE MIR -5 257 4 230 310 129 9 chr13 21555226 21555342 -98189556 - L2 LINE L2 -1364 1950 1821 2189 126 0 3 chr13 21555900 21556193 -98188705 - AluSx SINE Alu -20 292 1 2203 101 0 10 chr13 21556989 21557287 -98187611 - AluSx SINE Alu -17 295 1 263 259 145 48 chr13 21557608 21557660 -98187238 - MIR SINE MIR 0 262 216 2265 103 0 3 chr13 21557660 21557960 -98186938 - AluSx SINE Alu -13 299 1 263 259 145 48 chr13 21557960 21558073 -98186825 - MIR SINE MIR -46 216 81 299 313 46 23 chr13 21558160 21558291 -98186607 + L2 LINE L2 1459 1592 -1722 331 328 62 6 chr13 21558299 21558476 -98186422 + L2 LINE L2 1791 1977 -1337 2056 129 35 30 chr13 21558531 21558903 -98185995 + THE1C LTR MaLR 2 375 0 240 111 0 0 chr13 21559138 21559174 -98185724 + (A)n Simple_repeat Simple_repeat 1 36 0 2620 42 3 3 chr13 21560152 21560463 -98184435 - AluY SINE Alu 0 311 1 2686 150 65 7 chr13 21560722 21561368 -98183530 - L1MC/D LINE L1 -425 5817 5147 2349 90 3 3 chr13 21561466 21561778 -98183120 - AluSp SINE Alu -1 312 1 366 260 65 88 chr13 21561862 21561970 -98182928 - HAL1b LINE L1 -239 1109 1000 2277 84 3 13 chr13 21561970 21562279 -98182619 - AluY SINE Alu -5 306 1 366 260 65 88 chr13 21562279 21562554 -98182344 - HAL1b LINE L1 -348 1000 735 207 0 0 0 chr13 21562873 21562896 -98182002 + (TTTC)n Simple_repeat Simple_repeat 2 24 0 2186 74 0 18 chr13 21562896 21563181 -98181717 - AluSx SINE Alu -32 280 1 1724 130 3 34 chr13 21563624 21563916 -98180982 + AluSx SINE Alu 3 285 -27 492 62 0 0 chr13 21563916 21563980 -98180918 + (TAGA)n Simple_repeat Simple_repeat 4 67 0 2525 53 3 0 chr13 21564433 21564737 -98180161 + AluY SINE Alu 1 305 -6 281 326 112 23 chr13 21564758 21565701 -98179197 - L1M4 LINE L1 -2155 3991 2965 493 111 89 0 chr13 21565718 21565808 -98179090 + MER4A LTR ERV1 1 98 -566 1706 113 11 82 chr13 21565808 21566180 -98178718 + MER4A LTR ERV1 261 664 0 806 301 98 48 chr13 21566184 21566699 -98178199 - L1M4 LINE L1 -3200 2946 2385 2205 110 3 0 chr13 21566699 21566989 -98177909 + AluSq SINE Alu 2 292 -21 806 301 98 48 chr13 21566989 21567180 -98177718 - L1M4 LINE L1 -3761 2385 2205 25 51 0 0 chr13 21568734 21568773 -98176125 + AT_rich Low_complexity Low_complexity 1 39 0 4740 73 46 0 chr13 21569071 21569702 -98175196 - PABL_A LTR ERV1 0 660 1 602 186 0 8 chr13 21569715 21569833 -98175065 - L1P4 LINE L1 -402 5764 5648 * 7769 222 43 21 chr13 21569822 21571323 -98173575 - L1 LINE L1 -836 5546 4079 2340 89 0 13 chr13 21571323 21571626 -98173272 + AluY SINE Alu 1 299 -12 7769 222 43 21 chr13 21571626 21571782 -98173116 - L1 LINE L1 -2303 4079 3928 2153 106 0 3 chr13 21571782 21572090 -98172808 + AluSq SINE Alu 1 307 0 7769 222 43 21 chr13 21572090 21572732 -98172166 - L1 LINE L1 -2454 3928 3191 2063 178 70 5 chr13 21572732 21573130 -98171768 - MSTB LTR MaLR -2 424 1 7769 222 43 21 chr13 21573130 21573171 -98171727 - L1 LINE L1 -3191 3191 3152 2311 87 3 7 chr13 21573181 21573490 -98171408 - AluY SINE Alu -3 308 1 284 393 33 7 chr13 21573492 21573642 -98171256 - MIR SINE MIR -49 213 60 1941 154 106 23 chr13 21573951 21574346 -98170552 + MSTA LTR MaLR 1 428 0 2038 147 76 45 chr13 21574654 21575075 -98169823 + Tigger2a DNA MER2_type 1 434 0 1505 223 0 3 chr13 21575726 21576008 -98168890 + AluJo SINE Alu 1 281 -31 225 0 0 0 chr13 21576013 21576038 -98168860 + (T)n Simple_repeat Simple_repeat 1 25 0 643 197 74 18 chr13 21576059 21576263 -98168635 - L1 LINE L1 -3855 2527 2312 573 211 0 49 chr13 21576270 21576412 -98168486 - FAM SINE Alu -2 47 1 7294 215 57 31 chr13 21576425 21576683 -98168215 + L1M3 LINE L1 3001 3251 -2932 2213 101 3 0 chr13 21576683 21576971 -98167927 + AluY SINE Alu 13 301 -10 7294 215 57 31 chr13 21576971 21578318 -98166580 + L1M3 LINE L1 3251 4709 -1474 2341 107 0 0 chr13 21578318 21578618 -98166280 - AluSg SINE Alu -10 300 1 7294 215 57 31 chr13 21578618 21579526 -98165372 + L1M3 LINE L1 4709 5592 -591 485 131 12 0 chr13 21580296 21580380 -98164518 + MER61E LTR ERV1 1 85 -484 1019 204 139 15 chr13 21580607 21580945 -98163953 + LTR25 LTR ERV1 415 794 0 399 324 87 18 chr13 21580990 21581209 -98163689 + MIR SINE MIR 13 246 -16 432 0 0 0 chr13 21581499 21581547 -98163351 + (TTTTA)n Simple_repeat Simple_repeat 3 50 0 318 204 21 43 chr13 21582670 21582763 -98162135 + L1ME4a LINE L1 5872 5962 -159 25 95 0 0 chr13 21582908 21582982 -98161916 + AT_rich Low_complexity Low_complexity 1 74 0 549 311 76 62 chr13 21583018 21583373 -98161525 + L1M4 LINE L1 2364 2730 -3416 1958 138 0 10 chr13 21583373 21583670 -98161228 - AluSx SINE Alu -18 294 1 549 311 76 62 chr13 21583670 21583815 -98161083 + L1M4 LINE L1 2730 2871 -3275 843 256 78 20 chr13 21583874 21584362 -98160536 + L1M4 LINE L1 2988 3503 -2643 1609 110 17 8 chr13 21584502 21584739 -98160159 + AluSp SINE Alu 46 317 0 223 91 0 0 chr13 21584739 21584772 -98160126 + (TAAA)n Simple_repeat Simple_repeat 2 180 0 184 191 119 0 chr13 21585731 21585773 -98159125 - L2 LINE L2 -9 3263 3217 238 296 14 0 chr13 21585804 21585875 -98159023 - L2 LINE L2 0 3272 3201 181 304 80 40 chr13 21586128 21586253 -98158645 - L2 LINE L2 -483 2831 2702 329 169 108 0 chr13 21586336 21586401 -98158497 + MER57A LTR ERV1 1 72 -331 605 258 189 23 chr13 21586450 21586807 -98158091 - L1M4 LINE L1 -841 5305 4886 2019 145 0 7 chr13 21586833 21587136 -98157762 + AluSx SINE Alu 1 301 -11 2458 76 3 0 chr13 21587286 21587588 -98157310 + AluY SINE Alu 1 303 -8 2347 82 0 14 chr13 21587971 21588264 -98156634 + AluSg SINE Alu 1 289 -21 188 204 204 0 chr13 21588715 21588769 -98156129 - L2 LINE L2 -8 3264 3200 186 43 0 0 chr13 21588948 21588971 -98155927 + (CA)n Simple_repeat Simple_repeat 1 23 0 753 257 18 0 chr13 21589062 21589233 -98155665 + MER5B DNA MER1_type 5 178 0 351 261 34 0 chr13 21589250 21589338 -98155560 + MER5A DNA MER1_type 14 104 -85 652 227 0 65 chr13 21589437 21589591 -98155307 + MLT1D LTR MaLR 3 146 -359 1445 232 171 5 chr13 21589594 21590067 -98154831 - L1MC4 LINE L1 -666 7376 6983 258 32 0 0 chr13 21590067 21590098 -98154800 + (CA)n Simple_repeat Simple_repeat 1 31 0 1445 232 171 5 chr13 21590098 21590215 -98154683 - L1MC4 LINE L1 -1059 6983 6540 1320 114 18 44 chr13 21590444 21590671 -98154227 + THE1C LTR MaLR 155 375 0 443 265 134 53 chr13 21590678 21590999 -98153899 - MLT1J2 LTR MaLR -31 419 73 2372 81 3 3 chr13 21591027 21591335 -98153563 - AluY SINE Alu -3 308 1 1935 103 24 0 chr13 21591335 21591626 -98153272 - AluY SINE Alu -13 298 1 25 51 0 0 chr13 21591818 21591857 -98153041 + AT_rich Low_complexity Low_complexity 1 39 0 968 122 0 0 chr13 21591930 21592053 -98152845 - FLAM_C SINE Alu -10 123 1 1770 167 3 32 chr13 21592071 21592382 -98152516 - AluJo SINE Alu -10 302 1 214 147 0 0 chr13 21593938 21593972 -98150926 + (CTG)n Simple_repeat Simple_repeat 2 35 0 28972 61 4 1 chr13 21595608 21599289 -98145609 + L1PA6 LINE L1 1552 5246 -900 1098 119 6 6 chr13 21599311 21599471 -98145427 + L1PA6 LINE L1 5985 6144 -10 7289 61 15 1 chr13 21599474 21600358 -98144540 + L1PA6 LINE L1 5254 6149 -5 1810 146 11 13 chr13 21600359 21600815 -98144083 - L1PBb LINE L1 -5006 1857 1403 441 283 35 12 chr13 21600830 21601003 -98143895 - L1PBb LINE L1 -6684 179 3 1180 180 0 0 chr13 21601027 21601216 -98143682 - MSTB LTR MaLR -237 189 1 7307 183 137 1 chr13 21601221 21602670 -98142228 - MSTB-int LTR MaLR -6 1645 1 2574 169 29 2 chr13 21602670 21603085 -98141813 - MSTB LTR MaLR 0 426 1 853 225 19 0 chr13 21603480 21603640 -98141258 - FRAM SINE Alu -3 163 1 394 328 40 35 chr13 21603779 21603953 -98140945 + MIR3 SINE MIR 6 180 -28 2506 74 0 0 chr13 21604021 21604332 -98140566 - AluY SINE Alu 0 311 1 202 122 73 24 chr13 21604434 21604475 -98140423 + L2 LINE L2 3269 3311 -2 1175 165 64 23 chr13 21605023 21605241 -98139657 - AluJo SINE Alu -85 227 1 510 124 90 0 chr13 21608690 21608779 -98136119 + MER4A LTR ERV1 2 98 -566 1553 157 6 52 chr13 21608779 21608953 -98135945 + MER4A LTR ERV1 261 442 -222 2325 103 3 0 chr13 21608953 21609255 -98135643 - AluSx SINE Alu -9 303 1 1553 157 6 52 chr13 21609255 21609441 -98135457 + MER4A LTR ERV1 442 663 -1 274 303 25 33 chr13 21609520 21609642 -98135256 + MIR SINE MIR 92 212 -50 304 281 27 23 chr13 21610603 21611010 -98133888 - ALR/Alpha Satellite centromeric -41 408 1 2302 93 3 0 chr13 21611069 21611370 -98133528 - AluSp SINE Alu -11 302 1 432 256 20 20 chr13 21611437 21611647 -98133251 - ALR/Alpha Satellite centromeric 0 210 1 251 265 48 42 chr13 21611921 21612087 -98132811 - ALR/Alpha Satellite centromeric -5 167 1 352 268 36 33 chr13 21612196 21612563 -98132335 - ALR/Alpha Satellite centromeric -6 368 1 2095 113 17 0 chr13 21613123 21613414 -98131484 - AluSq SINE Alu -15 298 3 515 202 52 88 chr13 21613422 21613605 -98131293 - L1M4 LINE L1 -2884 3262 3091 2127 97 3 7 chr13 21613605 21613894 -98131004 - AluSx SINE Alu -24 288 1 515 202 52 88 chr13 21613894 21613982 -98130916 - L1M4 LINE L1 -3055 3091 3001 857 227 92 14 chr13 21613982 21614264 -98130634 - MER113 DNA MER1_type? -190 331 28 2341 112 0 3 chr13 21614559 21614872 -98130026 + AluSx SINE Alu 1 312 0 242 358 74 51 chr13 21614923 21615275 -98129623 + L3 LINE CR1 296 655 -922 2366 75 0 0 chr13 21615574 21615869 -98129029 - AluY SINE Alu -16 295 1 2138 120 3 3 chr13 21616614 21616913 -98127985 + AluSp SINE Alu 1 299 -14 2032 149 0 7 chr13 21617176 21617484 -98127414 + AluSx SINE Alu 1 306 -6 2441 57 0 10 chr13 21617617 21617914 -98126984 - AluY SINE Alu -17 294 1 1871 94 106 0 chr13 21620212 21620487 -98124411 + AluSp SINE Alu 1 304 -9 2403 70 6 13 chr13 21620488 21620801 -98124097 + AluY SINE Alu 1 311 0 313 145 0 0 chr13 21620862 21620932 -98123966 - Alu SINE Alu -2 298 247 22 56 0 0 chr13 21621279 21621315 -98123583 + AT_rich Low_complexity Low_complexity 1 36 0 1251 88 57 0 chr13 21621593 21621785 -98123113 + L1PB3 LINE L1 5531 5733 -421 1176 126 0 0 chr13 21621785 21621959 -98122939 + AluY SINE Alu 136 309 -2 356 123 0 84 chr13 21621959 21622042 -98122856 + L1PB3 LINE L1 5727 5791 -360 33 0 0 0 chr13 21622042 21622075 -98122823 + AT_rich Low_complexity Low_complexity 1 33 0 2569 110 0 46 chr13 21622099 21622490 -98122408 + L1PB3 LINE L1 5782 6154 0 22 35 0 0 chr13 21622646 21622675 -98122223 + AT_rich Low_complexity Low_complexity 1 29 0 230 215 0 15 chr13 21622756 21622821 -98122077 + (TATATG)n Simple_repeat Simple_repeat 3 66 0 21 0 0 0 chr13 21622999 21623020 -98121878 + AT_rich Low_complexity Low_complexity 1 21 0 1496 173 63 70 chr13 21623975 21624276 -98120622 + AluJb SINE Alu 1 299 -13 238 253 93 47 chr13 21624658 21624808 -98120090 + L1MC5 LINE L1 7757 7913 -48 411 268 328 0 chr13 21626137 21626320 -98118578 - MIR SINE MIR -14 248 6 882 216 10 113 chr13 21627201 21627346 -98117552 + MER21B LTR ERV1 1 103 -760 2472 80 0 0 chr13 21627346 21627657 -98117241 - AluY SINE Alu 0 311 1 882 216 10 113 chr13 21627657 21627803 -98117095 + MER21B LTR ERV1 103 262 -601 * 1007 147 153 1 chr13 21627800 21628127 -98116771 + MER31B LTR ERV1 47 466 0 2114 128 0 3 chr13 21628169 21628465 -98116433 + AluSx SINE Alu 1 295 -17 1595 221 75 107 chr13 21628534 21629255 -98115643 + MER31B-int LTR ERV1 42 739 -4197 5304 178 106 85 chr13 21629262 21629639 -98115259 + MER31B-int LTR ERV1 883 1251 -3685 2220 123 0 0 chr13 21629639 21629940 -98114958 + AluSx SINE Alu 1 301 -11 5304 178 106 85 chr13 21629940 21631321 -98113577 + MER31B-int LTR ERV1 1251 2678 -2258 2896 65 4 152 chr13 21631328 21631507 -98113391 - MER4E LTR ERV1 -7 759 555 2333 94 3 0 chr13 21631507 21631805 -98113093 + AluSp SINE Alu 1 299 -14 2896 65 4 152 chr13 21631805 21631848 -98113050 - MER4E LTR ERV1 -211 555 507 2242 118 0 3 chr13 21631848 21632153 -98112745 + AluSq SINE Alu 1 304 -9 2896 65 4 152 chr13 21632153 21632427 -98112471 - MER4E LTR ERV1 -259 507 341 1454 87 82 19 chr13 21632427 21632635 -98112263 + AluSc SINE Alu 77 297 -12 2896 65 4 152 chr13 21632635 21632663 -98112235 - MER4E LTR ERV1 -425 341 311 2626 147 40 4 chr13 21632663 21632825 -98112073 + LTR19A LTR ERV1 1 156 -330 3753 111 24 29 chr13 21632825 21633375 -98111523 + LTR10B LTR ERV1 1 547 0 2626 147 40 4 chr13 21633375 21633681 -98111217 + LTR19A LTR ERV1 156 486 0 1989 92 86 3 chr13 21633670 21633698 -98111200 - MER4E LTR ERV1 -438 328 304 * 180 0 0 0 chr13 21633698 21633718 -98111180 + (GGAA)n Simple_repeat Simple_repeat 1 20 0 1989 92 86 3 chr13 21633718 21633992 -98110906 - MER4E LTR ERV1 -462 304 1 2535 61 0 0 chr13 21634006 21634317 -98110581 - AluY SINE Alu 0 311 1 1532 247 27 25 chr13 21634318 21634760 -98110138 + MER31B-int LTR ERV1 2675 3117 -1819 470 156 89 0 chr13 21634765 21634855 -98110043 + MER4A LTR ERV1 1 98 -566 1671 148 162 73 chr13 21634855 21635226 -98109672 + MER4A LTR ERV1 261 664 0 2400 144 103 135 chr13 21635227 21635496 -98109402 + MER31B-int LTR ERV1 3120 3396 -1540 2206 101 7 0 chr13 21635496 21635792 -98109106 + AluY SINE Alu 1 298 -13 2400 144 103 135 chr13 21635792 21636285 -98108613 + MER31B-int LTR ERV1 3396 3858 -1078 229 203 63 51 chr13 21636285 21636364 -98108534 + MLT1A2 LTR MaLR 237 316 -58 795 195 95 0 chr13 21636364 21636493 -98108405 + MER31B-int LTR ERV1 3939 4089 -847 2239 98 3 10 chr13 21636493 21636789 -98108109 + AluSg SINE Alu 1 294 -16 795 195 95 0 chr13 21636789 21636828 -98108070 + MER31B-int LTR ERV1 4089 4123 -813 7021 95 24 1 chr13 21636833 21637844 -98107054 - L1P LINE L1 -2468 3678 2645 11363 93 18 1 chr13 21637845 21640135 -98104763 + L1PA7 LINE L1 3815 6149 -5 229 173 93 27 chr13 21640241 21640316 -98104582 + L1MB7 LINE L1 6105 6184 0 648 208 44 25 chr13 21640326 21640485 -98104413 + MER31B-int LTR ERV1 4118 4279 -657 357 152 0 38 chr13 21640486 21640565 -98104333 + LTR37A LTR ERV1 41 116 -310 886 135 122 80 chr13 21640738 21640787 -98104111 + MER31B-int LTR ERV1 4673 4718 -218 2543 65 0 3 chr13 21640787 21641097 -98103801 - AluY SINE Alu -2 309 1 886 135 122 80 chr13 21641097 21641284 -98103614 + MER31B-int LTR ERV1 4718 4919 -17 1604 227 55 23 chr13 21641287 21641723 -98103175 + MER31B LTR ERV1 7 456 -10 2478 54 10 0 chr13 21642282 21642578 -98102320 + AluY SINE Alu 1 299 -12 251 322 15 18 chr13 21642581 21642768 -98102130 - ALR/Alpha Satellite centromeric -5 186 1 298 280 50 38 chr13 21642783 21643037 -98101861 - ALR/Alpha Satellite centromeric -5 257 1 1746 166 7 0 chr13 21646432 21646728 -98098170 + AluSx SINE Alu 1 298 -14 451 317 76 40 chr13 21647013 21647157 -98097741 - L1M4 LINE L1 -832 5314 5177 1889 143 31 3 chr13 21647157 21647450 -98097448 - AluJo SINE Alu -11 301 1 451 317 76 40 chr13 21647450 21647804 -98097094 - L1M4 LINE L1 -969 5177 4798 651 76 0 0 chr13 21647985 21648077 -98096821 - L1P5 LINE L1 -658 5496 5405 11894 110 18 10 chr13 21648431 21648450 -98096448 + Tigger1 DNA MER2_type 29 46 -2372 2487 55 0 10 chr13 21648450 21648759 -98096139 - AluY SINE Alu -5 306 1 11894 110 18 10 chr13 21648759 21650279 -98094619 + Tigger1 DNA MER2_type 46 1586 -832 2161 123 7 0 chr13 21650279 21650579 -98094319 + AluSq SINE Alu 1 302 -11 11894 110 18 10 chr13 21650579 21650783 -98094115 + Tigger1 DNA MER2_type 1586 1787 -631 347 44 0 0 chr13 21650781 21650826 -98094072 - AluY SINE Alu -6 296 252 * 1068 70 0 0 chr13 21650828 21650957 -98093941 - AluY SINE Alu -182 129 1 1021 150 17 11 chr13 21650957 21651137 -98093761 + Tigger1 DNA MER2_type 2238 2418 0 1278 134 4 78 chr13 21652921 21653153 -98091745 + AluJo SINE Alu 85 299 -13 22 88 0 0 chr13 21653392 21653449 -98091449 + AT_rich Low_complexity Low_complexity 1 57 0 1304 114 5 0 chr13 21653611 21653795 -98091103 + AluSq SINE Alu 129 313 0 360 0 0 0 chr13 21654541 21654581 -98090317 + (TG)n Simple_repeat Simple_repeat 1 40 0 236 264 186 8 chr13 21654755 21654884 -98090014 + MIR SINE MIR 2 153 -109 276 264 136 16 chr13 21655026 21655151 -98089747 - L3 LINE CR1 -264 1313 1174 480 272 63 32 chr13 21655213 21655371 -98089527 + MIR SINE MIR 82 244 -18 228 67 0 0 chr13 21655383 21655413 -98089485 + (TTA)n Simple_repeat Simple_repeat 1 30 0 264 59 0 0 chr13 21655752 21655786 -98089112 + (TC)n Simple_repeat Simple_repeat 2 35 0 243 0 0 0 chr13 21655786 21655813 -98089085 + (CA)n Simple_repeat Simple_repeat 1 27 0 202 211 19 0 chr13 21656464 21656516 -98088382 + GA-rich Low_complexity Low_complexity 4 56 0 1743 113 132 4 chr13 21657193 21657458 -98087440 + AluSx SINE Alu 1 299 -13 1814 154 48 3 chr13 21658632 21658964 -98085934 - L1MB7 LINE L1 -16 6168 5822 1242 119 0 0 chr13 21659005 21659165 -98085733 - AluSx SINE Alu -152 160 1 184 257 57 43 chr13 21659681 21659751 -98085147 - L2 LINE L2 -86 3186 3116 324 303 119 88 chr13 21660240 21660953 -98083945 - L1M2 LINE L1 -5420 1429 695 2173 73 12 76 chr13 21662109 21662438 -98082460 - AluSc SINE Alu -1 308 1 253 270 14 27 chr13 21663448 21663522 -98081376 - L2 LINE L2 -999 2315 2243 180 271 62 0 chr13 21663586 21663634 -98081264 - L2 LINE L2 -18 3254 3204 233 111 22 89 chr13 21663929 21663974 -98080924 - Alu SINE Alu -176 126 85 313 276 0 11 chr13 21664158 21664245 -98080653 + (TATG)n Simple_repeat Simple_repeat 3 88 0 1902 129 0 85 chr13 21664912 21665253 -98079645 - AluSx SINE Alu 0 312 1 1430 208 20 60 chr13 21665268 21665668 -98079230 + L1MA10 LINE L1 5950 6333 -1 2154 127 0 0 chr13 21665776 21666075 -98078823 + AluY SINE Alu 1 299 -12 2243 104 0 3 chr13 21666089 21666388 -98078510 + AluY SINE Alu 1 298 -13 2248 88 0 3 chr13 21666935 21667246 -98077652 + AluY SINE Alu 1 310 0 369 109 0 0 chr13 21667827 21667882 -98077016 + (CCAA)n Simple_repeat Simple_repeat 1 55 0 2327 99 3 0 chr13 21668040 21668352 -98076546 + AluSq SINE Alu 1 313 0 222 242 39 102 chr13 21668990 21669118 -98075780 - MIR3 SINE MIR -6 202 83 1143 113 19 0 chr13 21670963 21671122 -98073776 - AluSx SINE Alu -150 162 1 936 132 0 0 chr13 21671150 21671286 -98073612 + AluSq/x SINE Alu 1 136 -177 2519 63 0 0 chr13 21671286 21671586 -98073312 + AluY SINE Alu 1 300 -11 22 0 0 0 chr13 21671787 21671809 -98073089 + AT_rich Low_complexity Low_complexity 1 22 0 252 341 57 11 chr13 21672269 21672357 -98072541 - L2 LINE L2 -5 3267 3176 2283 98 3 16 chr13 21672550 21672865 -98072033 + AluSx SINE Alu 2 312 0 213 39 0 0 chr13 21673600 21673626 -98071272 + (TAAAA)n Simple_repeat Simple_repeat 3 28 0 2111 112 42 0 chr13 21673765 21674051 -98070847 - AluSx SINE Alu -14 298 1 207 0 0 0 chr13 21674140 21674163 -98070735 + (TA)n Simple_repeat Simple_repeat 1 23 0 2304 82 0 60 chr13 21674562 21674893 -98070005 + AluY SINE Alu 1 311 0 2981 287 75 38 chr13 21675066 21675799 -98069099 + L1MC4a LINE L1 2278 2982 -3164 2122 139 0 3 chr13 21675799 21676100 -98068798 + AluSx SINE Alu 1 300 -12 2981 287 75 38 chr13 21676100 21677750 -98067148 + L1MC4a LINE L1 2982 4570 -1576 1515 124 55 0 chr13 21677750 21677968 -98066930 - MER30 DNA MER1_type 0 230 1 2981 287 75 38 chr13 21677968 21678056 -98066842 + L1MC4a LINE L1 4570 4653 -1493 2114 118 35 0 chr13 21678056 21678344 -98066554 - AluSx SINE Alu -14 298 1 2981 287 75 38 chr13 21678344 21679111 -98065787 + L1MC4a LINE L1 4653 4950 -1196 2545 52 3 0 chr13 21679111 21679418 -98065480 + AluY SINE Alu 1 308 -3 2981 287 75 38 chr13 21679418 21679885 -98065013 + L1MC4a LINE L1 4950 5398 -748 1328 164 36 5 chr13 21682327 21682547 -98062351 - MSTB LTR MaLR 0 426 200 2530 111 24 26 chr13 21682577 21682956 -98061942 - L1PB3 LINE L1 0 6870 6493 1856 74 18 0 chr13 21682999 21683228 -98061670 - AluSx SINE Alu -17 295 63 10798 195 51 22 chr13 21683228 21683686 -98061212 - L1PB3 LINE L1 -370 6500 6057 2177 123 0 3 chr13 21683686 21683987 -98060911 - AluSc SINE Alu -9 300 1 10798 195 51 22 chr13 21683987 21688006 -98056892 - L1PB3 LINE L1 -813 6057 1888 15589 66 7 4 chr13 21688020 21690205 -98054693 + L1P LINE L1 1425 3616 -2530 273 280 76 49 chr13 21690942 21691111 -98053787 - MIR SINE MIR -71 191 17 246 230 0 87 chr13 21691273 21691400 -98053498 + MLT1J LTR MaLR 110 289 -326 266 189 67 11 chr13 21691527 21691617 -98053281 + MLT1L LTR MaLR 489 583 -32 25 51 0 0 chr13 21691906 21691945 -98052953 + AT_rich Low_complexity Low_complexity 1 39 0 554 172 26 9 chr13 21691953 21692069 -98052829 - L1MB4 LINE L1 -12 6168 6051 726 243 41 4 chr13 21692609 21692877 -98052021 - L1M4 LINE L1 -2770 3376 3099 * 2916 184 56 6 chr13 21692873 21693520 -98051378 - L1 LINE L1 -2193 3953 3275 345 329 0 12 chr13 21694018 21694179 -98050719 + L1ME3A LINE L1 6000 6158 -12 247 200 40 40 chr13 21694232 21694307 -98050591 + MARNA DNA Mariner 368 442 -144 21 0 0 0 chr13 21694541 21694562 -98050336 + AT_rich Low_complexity Low_complexity 1 21 0 2186 110 0 31 chr13 21694684 21695002 -98049896 - AluSx SINE Alu -4 308 1 21 36 0 0 chr13 21695023 21695051 -98049847 + AT_rich Low_complexity Low_complexity 1 28 0 319 301 65 0 chr13 21696323 21696446 -98048452 + MER94 DNA DNA 2 132 -2 31 82 0 0 chr13 21696492 21696565 -98048333 + AT_rich Low_complexity Low_complexity 1 73 0 961 232 50 53 chr13 21701273 21701652 -98043246 - L1ME3A LINE L1 -5 6165 5788 329 264 50 36 chr13 21701659 21701799 -98043099 - MARNA DNA Mariner -197 389 248 2073 119 40 57 chr13 21702208 21702578 -98042320 - THE1B LTR MaLR 0 364 1 270 341 184 30 chr13 21703446 21703950 -98040948 + L2 LINE L2 1621 2202 -1112 432 258 113 25 chr13 21704003 21704162 -98040736 + MIR SINE MIR 3 175 -87 245 262 36 12 chr13 21704444 21704528 -98040370 + L2 LINE L2 2303 2388 -926 226 247 169 26 chr13 21704990 21705067 -98039831 + L2 LINE L2 3163 3250 -22 409 267 153 28 chr13 21705088 21705264 -98039634 + L2 LINE L2 2918 3115 -157 191 350 120 0 chr13 21705569 21705686 -98039212 - MIR SINE MIR -70 192 62 24 53 0 0 chr13 21705863 21705901 -98038997 + AT_rich Low_complexity Low_complexity 1 38 0 271 341 81 32 chr13 21706208 21706331 -98038567 + L2 LINE L2 3116 3244 -28 27 0 0 0 chr13 21706656 21706683 -98038215 + AT_rich Low_complexity Low_complexity 1 27 0 2179 116 0 3 chr13 21707448 21707758 -98037140 + AluSg1 SINE Alu 1 309 0 27 0 0 0 chr13 21707974 21708001 -98036897 + AT_rich Low_complexity Low_complexity 1 27 0 245 167 0 45 chr13 21708550 21708616 -98036282 + CT-rich Low_complexity Low_complexity 2 64 0 2261 100 0 0 chr13 21710187 21710487 -98034411 - AluSg1 SINE Alu -9 300 1 227 328 48 40 chr13 21710969 21711094 -98033804 - MIR3 SINE MIR -48 160 35 1406 148 26 4 chr13 21711226 21711456 -98033442 + MER46A DNA MER2_type 1 235 -1 21 0 0 0 chr13 21711726 21711747 -98033151 + AT_rich Low_complexity Low_complexity 1 21 0 2541 62 7 3 chr13 21711805 21712114 -98032784 + AluY SINE Alu 1 310 -1 185 293 110 0 chr13 21713618 21713700 -98031198 + L3 LINE CR1 559 649 -928 21 0 0 0 chr13 21724369 21724390 -98020508 + AT_rich Low_complexity Low_complexity 1 21 0 726 283 40 4 chr13 21725701 21725977 -98018921 - MER46C DNA MER2_type -52 286 1 2375 95 0 0 chr13 21726897 21727203 -98017695 - AluY SINE Alu -3 308 3 279 277 71 36 chr13 21728425 21728537 -98016361 + MIR SINE MIR 68 145 -63 276 219 167 0 chr13 21728613 21728709 -98016189 + MIR SINE MIR 81 192 -70 237 274 62 60 chr13 21730901 21731063 -98013835 - MIR3 SINE MIR -82 180 15 2019 164 82 9 chr13 21731236 21731663 -98013235 + LTR32 LTR ERVL 9 466 -5 2366 195 28 28 chr13 21732059 21732603 -98012295 + MER44D DNA MER2_type 7 605 0 180 0 0 0 chr13 21733259 21733279 -98011619 + (A)n Simple_repeat Simple_repeat 1 20 0 572 222 8 0 chr13 21733588 21733705 -98011193 - FAM SINE Alu -37 148 31 2193 112 0 7 chr13 21734555 21734859 -98010039 - AluSg SINE Alu -8 302 1 220 222 49 0 chr13 21735366 21735447 -98009451 + (TA)n Simple_repeat Simple_repeat 2 86 0 2831 65 48 83 chr13 21735605 21736065 -98008833 - MLT2A1 LTR ERVL 0 444 1 20047 55 12 10 chr13 21736065 21736671 -98008227 - HERVL-A1 LTR ERVL 0 5654 5051 2115 93 39 0 chr13 21736671 21736951 -98007947 - AluY SINE Alu -20 291 1 20047 55 12 10 chr13 21736951 21739310 -98005588 - HERVL-A1 LTR ERVL -603 5051 2677 353 74 19 0 chr13 21739302 21739356 -98005542 - HERVL-A1 LTR ERVL -5599 55 1 * 355 69 0 52 chr13 21739356 21739414 -98005484 - MLT2A1 LTR ERVL 0 453 399 234 0 0 0 chr13 21739466 21739492 -98005406 + (TA)n Simple_repeat Simple_repeat 1 26 0 341 47 0 0 chr13 21739591 21739634 -98005264 + MLT2A2 LTR ERVL 411 453 0 243 200 0 15 chr13 21739684 21739749 -98005149 + (TA)n Simple_repeat Simple_repeat 1 64 0 2890 68 20 5 chr13 21739750 21740148 -98004750 - MLT2A1 LTR ERVL -40 404 1 2272 126 0 0 chr13 21740410 21740719 -98004179 + AluSx SINE Alu 1 309 -3 1238 180 54 0 chr13 21741126 21741365 -98003533 - L1PB4 LINE L1 -12 6144 5893 742 271 70 11 chr13 21742139 21742412 -98002486 + LTR68 LTR ERV1 1 289 -451 432 287 108 25 chr13 21742452 21742838 -98002060 + L1MEc LINE L1 1595 2092 -809 325 276 24 16 chr13 21743177 21743300 -98001598 + L1MEc LINE L1 2452 2575 -3965 2580 61 0 0 chr13 21743489 21743800 -98001098 + AluY SINE Alu 1 311 0 282 280 81 57 chr13 21744183 21744394 -98000504 + L1M4 LINE L1 3975 4190 -1956 639 144 0 136 chr13 21744466 21744598 -98000300 + FLAM_A SINE Alu 1 114 -19 186 43 0 0 chr13 21744600 21744623 -98000275 + (TC)n Simple_repeat Simple_repeat 1 23 0 729 316 128 46 chr13 21744714 21745010 -97999888 + L1M4 LINE L1 4342 4612 -1534 1996 159 3 0 chr13 21745010 21745300 -97999598 + AluSx SINE Alu 3 293 -19 729 316 128 46 chr13 21745300 21745636 -97999262 + L1M4 LINE L1 4612 5026 -1120 21 0 0 0 chr13 21746839 21746860 -97998038 + AT_rich Low_complexity Low_complexity 1 21 0 249 309 32 35 chr13 21747347 21747661 -97997237 + L1MEc LINE L1 3713 4025 -2515 1024 198 126 0 chr13 21747708 21747825 -97997073 + AluJo SINE Alu 1 102 -210 189 0 0 0 chr13 21747825 21747846 -97997052 + (TAA)n Simple_repeat Simple_repeat 2 22 0 1024 198 126 0 chr13 21747846 21747950 -97996948 + AluJo SINE Alu 102 250 -62 2116 57 0 47 chr13 21748442 21748742 -97996156 + AluY SINE Alu 1 286 -25 1416 117 5 0 chr13 21748744 21748986 -97995912 + AluSg/x SINE Alu 85 327 0 196 222 74 0 chr13 21750530 21750584 -97994314 - MIR SINE MIR -117 145 88 1129 143 38 5 chr13 21750601 21750811 -97994087 - MSTB1 LTR MaLR -24 408 192 226 257 0 57 chr13 21751035 21751140 -97993758 + CT-rich Low_complexity Low_complexity 6 104 0 2218 103 0 7 chr13 21751637 21751937 -97992961 - AluSx SINE Alu -14 298 1 1357 249 38 0 chr13 21751939 21752336 -97992562 - L1M4 LINE L1 -1780 4366 3955 207 0 0 0 chr13 21752336 21752359 -97992539 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 1894 82 0 0 chr13 21752371 21752604 -97992294 - AluSc SINE Alu -76 233 1 913 225 10 0 chr13 21752604 21752804 -97992094 - L1MCa LINE L1 -6206 220 19 6565 91 27 21 chr13 21752890 21753842 -97991056 - L1MA2 LINE L1 -8 6296 5332 2071 141 0 16 chr13 21753842 21754147 -97990751 - AluSx SINE Alu -12 300 1 6565 91 27 21 chr13 21754147 21754333 -97990565 - L1MA2 LINE L1 -972 5332 5148 339 309 77 65 chr13 21754336 21754582 -97990316 + L2 LINE L2 3037 3285 -28 469 179 83 36 chr13 21754939 21755107 -97989791 + MER104 DNA MER2_type 2 177 -3 36 0 0 0 chr13 21755147 21755183 -97989715 + AT_rich Low_complexity Low_complexity 1 36 0 2047 88 4 0 chr13 21755510 21755771 -97989127 + AluSc SINE Alu 1 262 -47 3585 107 2 4 chr13 21755772 21756284 -97988614 + MER9 LTR ERVK 1 511 0 278 336 54 0 chr13 21756355 21756504 -97988394 - MIR SINE MIR -50 212 56 25 31 0 0 chr13 21756524 21756556 -97988342 + AT_rich Low_complexity Low_complexity 1 32 0 1515 168 22 16 chr13 21756823 21757145 -97987753 + L1MB3 LINE L1 5859 6182 -1 585 255 130 11 chr13 21758705 21758889 -97986009 - MIR SINE MIR -52 210 5 2182 106 3 7 chr13 21759702 21760003 -97984895 - AluSx SINE Alu -12 300 1 1785 163 101 31 chr13 21761015 21761145 -97983753 - MER65C LTR ERV1 -7 454 335 2243 119 0 0 chr13 21761145 21761439 -97983459 + AluSx SINE Alu 5 298 -14 1785 163 101 31 chr13 21761439 21761732 -97983166 - MER65C LTR ERV1 -126 335 1 951 302 211 34 chr13 21762882 21763806 -97981092 + L2 LINE L2 1747 2834 -480 369 271 31 16 chr13 21764184 21764313 -97980585 + MLT1L LTR MaLR 468 598 -17 2136 112 3 0 chr13 21765498 21765810 -97979088 + AluSc SINE Alu 1 313 0 1142 233 185 75 chr13 21765926 21766509 -97978389 - MLT1E2 LTR MaLR -4 622 4 537 167 17 50 chr13 21766569 21766689 -97978209 + Tigger7 DNA MER2_type 1 116 -617 1845 136 14 32 chr13 21766697 21767043 -97977855 + Tigger7 DNA MER2_type 2248 2587 0 273 353 59 0 chr13 21767369 21767454 -97977444 - MIR SINE MIR -85 123 34 12541 106 12 12 chr13 21767478 21770529 -97974369 + L1P3 LINE L1 1 3071 -3390 1081 197 112 16 chr13 21770665 21770782 -97974116 + AluJo SINE Alu 1 105 -207 189 0 0 0 chr13 21770782 21770803 -97974095 + (TAA)n Simple_repeat Simple_repeat 2 22 0 1081 197 112 16 chr13 21770803 21770934 -97973964 + AluJo SINE Alu 105 273 -39 603 321 105 16 chr13 21770986 21771811 -97973087 + L1MC/D LINE L1 3797 4709 -1437 1769 124 4 0 chr13 21771920 21772020 -97972878 + AluSx SINE Alu 23 121 -191 243 0 0 0 chr13 21772020 21772047 -97972851 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 1769 124 4 0 chr13 21772047 21772203 -97972695 + AluSx SINE Alu 121 280 -32 311 221 0 117 chr13 21772361 21772524 -97972374 + L1MC/D LINE L1 4887 5030 -1116 1026 227 74 60 chr13 21772648 21773123 -97971775 + L1MC/D LINE L1 5214 5691 -743 529 287 72 21 chr13 21773206 21773541 -97971357 - L1MEc LINE L1 -6001 395 44 446 247 55 7 chr13 21773585 21773731 -97971167 + Charlie2 DNA MER1_type 169 321 -2461 1078 194 91 142 chr13 21773735 21774165 -97970733 + Charlie2 DNA MER1_type 1854 2216 -646 1102 144 0 0 chr13 21774165 21774353 -97970545 - L1MA5 LINE L1 -2 6298 6111 1078 194 91 142 chr13 21774353 21774822 -97970076 + Charlie2 DNA MER1_type 2216 2707 -155 2348 96 0 16 chr13 21774910 21775222 -97969676 - AluSx SINE Alu -5 307 1 495 201 117 13 chr13 21775285 21775439 -97969459 - L1MD3 LINE L1 -1095 6900 6731 309 279 62 50 chr13 21775442 21775621 -97969277 - L1MDa LINE L1 -5190 1350 1170 2440 52 0 3 chr13 21775703 21775993 -97968905 - AluY SINE Alu -22 289 1 207 0 0 0 chr13 21775994 21776017 -97968881 + (T)n Simple_repeat Simple_repeat 1 23 0 203 356 17 0 chr13 21776861 21776920 -97967978 + L2 LINE L2 3127 3186 -86 2333 78 3 0 chr13 21777075 21777369 -97967529 + AluY SINE Alu 1 295 -16 450 0 0 0 chr13 21777369 21777419 -97967479 + (TA)n Simple_repeat Simple_repeat 2 51 0 403 307 132 15 chr13 21777639 21777844 -97967054 + MIR SINE MIR 28 256 -6 24 0 0 0 chr13 21778123 21778147 -97966751 + AT_rich Low_complexity Low_complexity 1 24 0 1091 123 0 0 chr13 21778475 21778621 -97966277 - AluSg/x SINE Alu -31 281 136 9115 98 12 0 chr13 21778721 21780084 -97964814 + L1P LINE L1 1517 2895 -3251 471 170 0 80 chr13 21780099 21780199 -97964699 + MER20 DNA MER1_type 117 208 -11 2810 100 47 7 chr13 21780199 21780629 -97964269 + L1PA13 LINE L1 5717 6163 0 2045 170 18 0 chr13 21781045 21781375 -97963523 + MER1B DNA MER1_type 1 336 -1 898 183 0 56 chr13 21781442 21781571 -97963327 + MER5A DNA MER1_type 1 121 -68 1887 142 0 17 chr13 21781571 21781901 -97962997 - AluJb SINE Alu 0 325 1 898 183 0 56 chr13 21781901 21781949 -97962949 + MER5A DNA MER1_type 121 170 -19 354 332 124 0 chr13 21782150 21782352 -97962546 - MIR SINE MIR -34 228 2 2276 113 0 0 chr13 21782927 21783227 -97961671 + AluSx SINE Alu 1 300 -12 1273 105 0 0 chr13 21784491 21784662 -97960236 - AluSp SINE Alu -10 303 133 2807 245 56 49 chr13 21784770 21784839 -97960059 - L1MEc LINE L1 -3025 3190 3123 2481 72 13 0 chr13 21784839 21785145 -97959753 - AluY SINE Alu -1 310 1 2807 245 56 49 chr13 21785145 21787326 -97957572 - L1MEc LINE L1 -3092 3123 953 2017 255 19 36 chr13 21787337 21788034 -97956864 - L1MEc LINE L1 -5654 742 58 2386 56 0 3 chr13 21789309 21789621 -97955277 - AluY SINE Alu 0 311 1 2308 86 33 0 chr13 21790627 21790930 -97953968 - AluSp SINE Alu 0 313 1 466 234 2 28 chr13 21791681 21791822 -97953076 - L1ME1 LINE L1 0 6164 6029 223 297 171 9 chr13 21791845 21791956 -97952942 - L2 LINE L2 -1 3312 3184 486 315 64 8 chr13 21791987 21792238 -97952660 + L2 LINE L2 1891 2155 -1159 1000 165 14 14 chr13 21792311 21792529 -97952369 - L1MB3 LINE L1 -7 6176 5959 2526 171 24 4 chr13 21792631 21793129 -97951769 - L1MB3 LINE L1 -208 5963 5456 209 274 88 62 chr13 21793165 21793226 -97951672 + L2 LINE L2 2260 2327 -987 2081 80 0 0 chr13 21793226 21793476 -97951422 - AluY SINE Alu -22 289 40 209 274 88 62 chr13 21793476 21793527 -97951371 + L2 LINE L2 2327 2375 -939 2141 124 10 0 chr13 21793881 21794179 -97950719 - AluSx SINE Alu -11 301 1 9080 172 24 39 chr13 21794685 21796832 -97948066 + L1PA15 LINE L1 3606 5735 -430 2123 108 3 45 chr13 21796832 21797146 -97947752 + AluSx SINE Alu 1 301 -11 9080 172 24 39 chr13 21797146 21797562 -97947336 + L1PA15 LINE L1 5735 6156 -9 21 0 0 0 chr13 21797632 21797653 -97947245 + AT_rich Low_complexity Low_complexity 1 21 0 1447 183 63 0 chr13 21797922 21798190 -97946708 + AluJb SINE Alu 1 285 -27 828 221 232 29 chr13 21798215 21798638 -97946260 - L1ME1 LINE L1 -144 6022 5523 23 54 0 0 chr13 21798991 21799028 -97945870 + AT_rich Low_complexity Low_complexity 1 37 0 262 344 38 6 chr13 21799501 21799661 -97945237 - L1M4 LINE L1 -1999 4147 3983 203 383 43 11 chr13 21799730 21799824 -97945074 + MIR SINE MIR 29 125 -137 308 253 42 0 chr13 21800038 21800133 -97944765 + U6 snRNA snRNA 9 107 0 186 171 0 0 chr13 21800544 21800585 -97944313 + (CAT)n Simple_repeat Simple_repeat 2 42 0 2417 155 67 0 chr13 21803152 21803584 -97941314 - LOR1b LTR ERV1 0 461 1 1908 142 3 26 chr13 21804067 21804369 -97940529 - AluSx SINE Alu -13 299 5 307 309 68 60 chr13 21805170 21805299 -97939599 - L2 LINE L2 -169 3144 3017 2433 130 47 5 chr13 21805299 21805707 -97939191 - MSTA LTR MaLR 0 428 4 307 309 68 60 chr13 21805707 21805842 -97939056 - L2 LINE L2 -296 3017 2878 2404 81 0 0 chr13 21806858 21807156 -97937742 - AluY SINE Alu -13 298 1 778 139 44 0 chr13 21807762 21807899 -97936999 - Tigger5 DNA MER2_type -66 2257 2115 4913 169 20 3 chr13 21809592 21810896 -97934002 - L1MB1 LINE L1 -501 5667 4342 2546 157 34 16 chr13 21810896 21811396 -97933502 + L1MB1 LINE L1 5645 6155 -13 24 0 0 0 chr13 21811397 21811421 -97933477 + AT_rich Low_complexity Low_complexity 1 24 0 21 89 0 0 chr13 21812436 21812492 -97932406 + AT_rich Low_complexity Low_complexity 1 56 0 732 97 0 0 chr13 21812769 21812985 -97931913 + AluSg/x SINE Alu 208 423 0 26 50 0 0 chr13 21813996 21814036 -97930862 + AT_rich Low_complexity Low_complexity 1 40 0 2389 97 0 0 chr13 21814307 21814615 -97930283 + AluY SINE Alu 1 308 -3 903 318 151 14 chr13 21815013 21815587 -97929311 + L2 LINE L2 2386 3049 -223 922 212 74 11 chr13 21815848 21816275 -97928623 - MLT1D LTR MaLR -5 500 3 897 305 88 19 chr13 21816411 21817084 -97927814 + L2 LINE L2 2590 3308 -5 2161 98 3 3 chr13 21817116 21817425 -97927473 - AluSx SINE Alu 0 309 1 2129 70 0 0 chr13 21818443 21818702 -97926196 - AluY SINE Alu -15 296 38 2314 104 0 3 chr13 21818702 21819001 -97925897 - AluSg SINE Alu -12 298 1 406 259 79 44 chr13 21819736 21819964 -97924934 - L1MEd LINE L1 -4911 1208 973 225 233 0 0 chr13 21820326 21820369 -97924529 + L2 LINE L2 3230 3272 0 253 321 81 40 chr13 21820986 21821491 -97923407 + L1ME LINE L1 5357 5882 -239 442 291 108 22 chr13 21823013 21823236 -97921662 + MLT1K LTR MaLR 347 588 0 1139 298 155 40 chr13 21823454 21824721 -97920177 + L2 LINE L2 1892 3308 -5 2206 85 0 7 chr13 21824871 21825152 -97919746 + AluSq SINE Alu 1 279 -34 341 43 21 0 chr13 21825165 21825212 -97919686 + (TAAAA)n Simple_repeat Simple_repeat 2 49 0 2340 49 35 0 chr13 21825375 21825663 -97919235 - AluY SINE Alu -13 298 1 23 33 0 0 chr13 21827499 21827529 -97917369 + AT_rich Low_complexity Low_complexity 1 30 0 1948 116 4 0 chr13 21828091 21828358 -97916540 + AluSx SINE Alu 1 268 -44 447 276 138 16 chr13 21828502 21828748 -97916150 + HERVL LTR ERVL 2277 2552 -3102 840 256 47 47 chr13 21828829 21828948 -97915950 + HERVL LTR ERVL 2672 2790 -2206 1872 134 39 20 chr13 21828948 21829254 -97915644 + AluSx SINE Alu 1 312 0 840 256 47 47 chr13 21829254 21829454 -97915444 + HERVL LTR ERVL 2789 2991 -2005 461 305 18 12 chr13 21829595 21829863 -97915035 + HERVL LTR ERVL 3204 3396 -2258 906 335 95 15 chr13 21830058 21830882 -97914016 + HERVL LTR ERVL 3724 4613 -1041 1920 121 0 0 chr13 21832077 21832333 -97912565 + AluSc SINE Alu 1 256 -53 1132 137 197 9 chr13 21832382 21832696 -97912202 + MER65A LTR ERV1 1 445 0 490 247 52 0 chr13 21832697 21832851 -97912047 - LTR16A1 LTR ERVL 0 457 296 21 0 0 0 chr13 21833260 21833281 -97911617 + AT_rich Low_complexity Low_complexity 1 21 0 2340 94 3 0 chr13 21833601 21833899 -97910999 + AluSg SINE Alu 1 299 -11 357 280 87 40 chr13 21834323 21834473 -97910425 - MIR SINE MIR -26 236 80 22 0 0 0 chr13 21836369 21836391 -97908507 + AT_rich Low_complexity Low_complexity 1 22 0 182 79 0 53 chr13 21836777 21836815 -97908083 + (CAAA)n Simple_repeat Simple_repeat 2 37 0 22 0 0 0 chr13 21837346 21837368 -97907530 + AT_rich Low_complexity Low_complexity 1 22 0 1236 171 0 9 chr13 21837475 21837697 -97907201 + L1PA15 LINE L1 5944 6163 -2 214 273 283 0 chr13 21838396 21838495 -97906403 - MIR3 SINE MIR -8 200 74 2289 103 0 23 chr13 21839688 21839998 -97904900 + AluSx SINE Alu 1 303 -9 3783 146 26 38 chr13 21840044 21840707 -97904191 - L1MA6 LINE L1 -14 6286 5632 1700 193 18 2 chr13 21840707 21841177 -97903721 + L1M2 LINE L1 2719 3198 -3650 655 298 41 17 chr13 21843364 21843656 -97901242 - HAL1 LINE L1 -723 1784 1486 24 103 0 0 chr13 21845116 21845203 -97899695 + AT_rich Low_complexity Low_complexity 1 87 0 2286 159 3 9 chr13 21845654 21845993 -97898905 + MER1B DNA MER1_type 1 337 0 206 353 104 6 chr13 21846139 21846312 -97898586 + MIR SINE MIR 20 209 -53 462 269 101 71 chr13 21847377 21847780 -97897118 + MLT1K LTR MaLR 146 588 0 408 40 0 0 chr13 21847816 21847866 -97897032 + (TG)n Simple_repeat Simple_repeat 1 50 0 219 36 0 0 chr13 21847865 21847893 -97897005 + (GA)n Simple_repeat Simple_repeat 1 28 0 * 2223 77 4 0 chr13 21847894 21848167 -97896731 - AluSc SINE Alu -35 274 1 36 0 0 0 chr13 21848494 21848530 -97896368 + AT_rich Low_complexity Low_complexity 1 36 0 546 179 83 36 chr13 21848570 21848738 -97896160 - MER104 DNA MER2_type -3 177 2 365 309 73 61 chr13 21849095 21849341 -97895557 - L2 LINE L2 -28 3285 3037 7115 91 27 21 chr13 21849344 21849530 -97895368 + L1MA2 LINE L1 5148 5332 -972 2049 141 0 16 chr13 21849530 21849835 -97895063 + AluSx SINE Alu 1 300 -12 7115 91 27 21 chr13 21849835 21850787 -97894111 + L1MA2 LINE L1 5332 6296 -8 999 225 10 0 chr13 21850873 21851073 -97893825 + L1MCa LINE L1 19 220 -6206 1903 82 0 0 chr13 21851073 21851306 -97893592 + AluSc SINE Alu 1 233 -76 207 0 0 0 chr13 21851318 21851341 -97893557 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 1538 239 43 5 chr13 21851341 21851738 -97893160 + L1M4 LINE L1 3955 4366 -1780 2213 104 0 7 chr13 21851740 21852039 -97892859 + AluSx SINE Alu 1 297 -15 224 257 0 57 chr13 21852536 21852641 -97892257 + GA-rich Low_complexity Low_complexity 6 104 0 1222 143 38 5 chr13 21852865 21853075 -97891823 + MSTB1 LTR MaLR 192 408 -24 191 168 42 0 chr13 21853092 21853146 -97891752 + MIR SINE MIR 88 146 -62 1417 117 5 0 chr13 21854690 21854932 -97889966 - AluSg/x SINE Alu 0 327 85 2151 57 0 47 chr13 21854934 21855234 -97889664 - AluY SINE Alu -25 286 1 415 280 147 63 chr13 21856937 21857380 -97887518 + L1MB8 LINE L1 580 1059 -5899 1585 173 114 82 chr13 21858340 21858803 -97886095 - LTR12 LTR ERV1 -236 478 1 336 176 96 128 chr13 21859669 21859856 -97885042 - Charlie7 DNA MER1_type -6 2606 2426 836 150 0 0 chr13 21859865 21859998 -97884900 + AluSg/x SINE Alu 177 309 -3 284 276 13 26 chr13 21860001 21860077 -97884821 + L1M4 LINE L1 15 89 -6770 1074 40 0 0 chr13 21860143 21860269 -97884629 - AluY SINE Alu -9 302 177 5628 147 24 10 chr13 21860294 21861085 -97883813 - L1PB3 LINE L1 -39 6115 5337 2471 53 0 3 chr13 21861085 21861385 -97883513 - AluY SINE Alu -12 299 1 5628 147 24 10 chr13 21861385 21861865 -97883033 - L1PB3 LINE L1 -817 5337 4828 2055 87 42 3 chr13 21861865 21862153 -97882745 - AluY SINE Alu -12 299 1 5628 147 24 10 chr13 21862153 21862229 -97882669 - L1PB3 LINE L1 -1326 4828 4755 4930 240 59 43 chr13 21862247 21863695 -97881203 + L1M4 LINE L1 84 1555 -5304 356 0 23 0 chr13 21863783 21863827 -97881071 + (CA)n Simple_repeat Simple_repeat 2 46 0 2851 230 34 77 chr13 21863978 21864880 -97880018 + L1M4 LINE L1 3716 4556 -2401 734 101 10 0 chr13 21864880 21864979 -97879919 + HY3 scRNA scRNA 1 100 -1 2851 230 34 77 chr13 21864979 21865276 -97879622 + L1M4 LINE L1 4556 4864 -2093 461 219 42 8 chr13 21865286 21865405 -97879493 + L1MB8 LINE L1 3283 3405 -3552 329 150 0 0 chr13 21865409 21865469 -97879429 + L1P LINE L1 5369 5428 -728 2927 86 11 11 chr13 21865472 21865845 -97879053 + THE1C LTR MaLR 1 373 -2 3920 159 16 15 chr13 21865847 21866531 -97878367 + L1MA6 LINE L1 5615 6299 -1 2691 214 84 8 chr13 21866549 21867724 -97877174 + L1MB8 LINE L1 5437 6757 -238 582 184 21 35 chr13 21867727 21867868 -97877030 + L1MB8 LINE L1 6850 6988 -1 382 281 50 91 chr13 21868618 21868721 -97876177 + MIR SINE MIR 6 112 -150 2082 94 28 3 chr13 21868721 21869009 -97875889 - AluSp SINE Alu -16 297 3 382 281 50 91 chr13 21869009 21869147 -97875751 + MIR SINE MIR 112 237 -25 3491 111 108 89 chr13 21869396 21870159 -97874739 + LTR1 LTR ERV1 1 777 -8 346 274 56 111 chr13 21870817 21871051 -97873847 - MLT1I LTR MaLR -121 288 68 2242 79 3 14 chr13 21871793 21872119 -97872779 + AluSq SINE Alu 1 323 0 1537 116 30 67 chr13 21873694 21873962 -97870936 + AluY SINE Alu 41 298 -13 1063 138 25 0 chr13 21874158 21874318 -97870580 + AluY SINE Alu 1 164 -147 4049 150 65 5 chr13 21874319 21874964 -97869934 - LTR12 LTR ERV1 0 688 5 1827 201 63 53 chr13 21875008 21875591 -97869307 - pTR5 LTR ERV1 -1106 1332 744 984 115 0 7 chr13 21875591 21875739 -97869159 + AluY SINE Alu 161 307 -4 23 0 0 0 chr13 21875783 21875806 -97869092 + AT_rich Low_complexity Low_complexity 1 23 0 2110 111 17 0 chr13 21875837 21876134 -97868764 - AluSx SINE Alu 0 312 11 2373 86 0 0 chr13 21876146 21876447 -97868451 - AluY SINE Alu -10 301 1 2536 77 3 0 chr13 21877415 21877725 -97867173 + AluSx SINE Alu 1 311 -1 2492 62 0 7 chr13 21877952 21878259 -97866639 + AluY SINE Alu 1 305 -6 347 133 0 0 chr13 21878303 21878363 -97866535 - Alu SINE Alu 0 300 241 1960 97 0 0 chr13 21878625 21878873 -97866025 + AluSq SINE Alu 1 248 -65 232 236 163 65 chr13 21879145 21879268 -97865630 + MIR3 SINE MIR 40 174 -34 2260 90 7 0 chr13 21879680 21880317 -97864581 + AluSq SINE Alu 1 639 0 2419 105 0 0 chr13 21880320 21880624 -97864274 + AluSx SINE Alu 1 304 -8 184 116 163 23 chr13 21880667 21880710 -97864188 - L2 LINE L2 -5 3267 3219 2228 121 0 0 chr13 21881405 21881711 -97863187 - AluSq SINE Alu -7 306 1 2168 113 3 0 chr13 21882159 21882451 -97862447 + AluSq SINE Alu 9 301 -12 2211 109 0 7 chr13 21886799 21887103 -97857795 + AluSg SINE Alu 1 302 -8 213 39 0 0 chr13 21888762 21888788 -97856110 + (TAAAA)n Simple_repeat Simple_repeat 3 28 0 2120 108 42 0 chr13 21888927 21889213 -97855685 - AluSx SINE Alu -14 298 1 207 0 0 0 chr13 21889302 21889325 -97855573 + (TA)n Simple_repeat Simple_repeat 2 24 0 2481 71 10 0 chr13 21889724 21890032 -97854866 + AluY SINE Alu 1 311 0 180 0 0 0 chr13 21940953 21940973 -97803925 + (TTA)n Simple_repeat Simple_repeat 2 21 0 254 276 118 0 chr13 21942204 21942280 -97802618 + MIR SINE MIR 62 146 -62 230 268 93 31 chr13 21942845 21942942 -97801956 + MER91B DNA MER1_type 38 140 -50 215 320 27 0 chr13 21943121 21943196 -97801702 - L2 LINE L2 -5 3267 3191 221 125 21 21 chr13 21943268 21943316 -97801582 + (TA)n Simple_repeat Simple_repeat 1 48 0 1690 160 6 58 chr13 21943407 21943519 -97801379 + AluJo SINE Alu 1 117 -195 2145 138 3 0 chr13 21943519 21943817 -97801081 + AluSx SINE Alu 1 299 -13 1690 160 6 58 chr13 21943817 21944029 -97800869 + AluJo SINE Alu 117 308 -4 2917 185 9 30 chr13 21944399 21944957 -97799941 + MLT2B3 LTR ERVL 1 546 -8 2176 152 67 34 chr13 21945344 21945865 -97799033 + MLT2A2 LTR ERVL 1 552 -2 235 236 36 0 chr13 21945972 21946027 -97798871 + MIR SINE MIR 92 148 -114 2953 129 13 76 chr13 21946028 21946554 -97798344 + Tigger1 DNA MER2_type 2 494 -1924 4682 131 35 3 chr13 21946557 21947289 -97797609 + L1PA16 LINE L1 5387 6142 -24 3286 127 12 2 chr13 21947311 21947815 -97797083 + Tigger1 DNA MER2_type 480 988 -1430 1153 100 29 18 chr13 21947815 21947985 -97796913 + THE1C LTR MaLR 1 172 -203 672 248 7 26 chr13 21948007 21948160 -97796738 - MER45A DNA AcHobo -1 177 28 2434 96 3 0 chr13 21948391 21948703 -97796195 + AluSp SINE Alu 1 313 0 1072 129 17 11 chr13 21948703 21948881 -97796017 + AluSg/x SINE Alu 132 310 0 322 339 65 11 chr13 21949645 21949831 -97795067 + MIR SINE MIR 39 234 -28 192 286 0 0 chr13 21949995 21950044 -97794854 - MIR SINE MIR -10 252 204 203 247 137 14 chr13 21950653 21950726 -97794172 - MIR SINE MIR -57 205 124 371 127 27 136 chr13 21951313 21951423 -97793475 - MER53 DNA DNA -88 101 4 2048 121 0 0 chr13 21951578 21951859 -97793039 - AluSx SINE Alu -18 294 14 239 254 146 18 chr13 21952006 21952116 -97792782 + MIR SINE MIR 32 155 -107 2677 42 0 3 chr13 21952135 21952447 -97792451 + AluY SINE Alu 1 311 0 256 70 139 0 chr13 21952672 21952715 -97792183 - L1MB8 LINE L1 -3 6175 6127 290 208 7 78 chr13 21952987 21953140 -97791758 - MER4A LTR ERV1 -203 461 261 510 124 90 0 chr13 21953140 21953229 -97791669 - MER4A LTR ERV1 -566 98 2 2289 98 0 28 chr13 21955171 21955489 -97789409 - AluY SINE Alu -2 309 1 2343 104 13 0 chr13 21955676 21955984 -97788914 + AluSx SINE Alu 1 312 0 310 282 151 22 chr13 21957324 21957689 -97787209 - L1M4 LINE L1 -2881 3265 2854 266 247 39 0 chr13 21957976 21958053 -97786845 - L1M4 LINE L1 -3750 2396 2317 209 316 89 30 chr13 21958230 21958398 -97786500 - L2 LINE L2 -117 3196 3019 354 262 136 0 chr13 21958409 21958512 -97786386 - L2 LINE L2 -8 3305 3189 791 294 151 22 chr13 21958539 21959012 -97785886 - L2 LINE L2 -307 3006 2457 358 176 15 0 chr13 21959458 21959526 -97785372 + MLT2B3 LTR ERVL 3 71 -483 2009 160 134 46 chr13 21959625 21960057 -97784841 + MLT2B3 LTR ERVL 77 546 -8 385 281 69 44 chr13 21960148 21960237 -97784661 + ERVL LTR ERVL 5214 5310 -454 2466 126 28 11 chr13 21960237 21960595 -97784303 + THE1B LTR MaLR 1 364 0 385 281 69 44 chr13 21960595 21960665 -97784233 + ERVL LTR ERVL 5310 5377 -387 2352 214 105 2 chr13 21960954 21961468 -97783430 - MLT1F1 LTR MaLR 0 567 1 277 179 18 0 chr13 21961494 21961550 -97783348 + LTR67 LTR ERVL 6 62 -495 257 274 24 12 chr13 21961808 21961892 -97783006 + LTR67 LTR ERVL 433 517 -40 451 51 0 0 chr13 21961972 21962031 -97782867 - L1PA3 LINE L1 -1009 5137 5079 8262 18 1 0 chr13 21962031 21963034 -97781864 + L1PA3 LINE L1 5149 6152 -3 22 0 0 0 chr13 21963034 21963056 -97781842 + AT_rich Low_complexity Low_complexity 1 22 0 614 101 0 0 chr13 21963215 21963294 -97781604 + AluSg/x SINE Alu 218 296 -13 901 226 98 16 chr13 21963668 21963973 -97780925 - MLT2C1 LTR ERVL -6 391 62 23 54 0 0 chr13 21964118 21964155 -97780743 + AT_rich Low_complexity Low_complexity 1 37 0 312 235 67 123 chr13 21964544 21964723 -97780175 + MIR SINE MIR 6 174 -88 1841 168 42 81 chr13 21965033 21965439 -97779459 + MLT1B LTR MaLR 1 390 0 272 150 0 0 chr13 21965691 21965731 -97779167 - L1ME LINE L1 -431 5733 5694 1301 235 71 55 chr13 21965734 21966185 -97778713 + MER101 LTR ERV1 13 470 -4 1190 250 3 20 chr13 21966188 21966306 -97778592 - L1ME LINE L1 -470 5696 5578 2500 76 0 0 chr13 21966306 21966610 -97778288 + AluY SINE Alu 1 304 -7 1190 250 3 20 chr13 21966610 21966787 -97778111 - L1ME LINE L1 -588 5578 5406 2194 97 31 0 chr13 21966930 21967220 -97777678 - AluSx SINE Alu -13 299 1 4695 146 53 15 chr13 21967224 21968101 -97776797 - L1MC2 LINE L1 -236 6108 5198 800 241 111 26 chr13 21969214 21969521 -97775377 - L1MD3 LINE L1 0 7995 7715 2213 119 0 0 chr13 21969521 21969815 -97775083 - AluSx SINE Alu -18 294 1 800 241 111 26 chr13 21969815 21969875 -97775023 - L1MD3 LINE L1 -280 7715 5943 406 216 26 37 chr13 21969879 21970011 -97774887 - L1M2 LINE L1 -539 5627 5509 367 203 163 65 chr13 21970306 21970429 -97774469 + MIR SINE MIR 46 180 -82 256 272 193 9 chr13 21971569 21971683 -97773215 - MIR SINE MIR -117 145 11 1060 167 118 29 chr13 21971853 21972098 -97772800 + AluJo SINE Alu 38 304 -8 582 231 172 14 chr13 21972240 21972530 -97772368 + L1ME3 LINE L1 5149 5473 -691 2380 60 0 0 chr13 21972530 21972815 -97772083 + AluY SINE Alu 24 308 -3 721 263 52 73 chr13 21972826 21973073 -97771825 + L1ME3 LINE L1 5841 6081 -81 1533 171 90 31 chr13 21973073 21973395 -97771503 - MER2 DNA MER2_type -3 341 1 721 263 52 73 chr13 21973395 21973474 -97771424 + L1ME3 LINE L1 6081 6160 -2 679 296 98 22 chr13 21973699 21974313 -97770585 - L2 LINE L2 -30 3283 2524 2325 103 3 0 chr13 21974588 21974890 -97770008 - AluSx SINE Alu -9 303 1 1305 112 10 25 chr13 21974890 21975076 -97769822 + MER4B LTR ERV1 425 609 -1 274 303 25 33 chr13 21975155 21975277 -97769621 + MIR SINE MIR 92 212 -50 304 281 27 23 chr13 21976238 21976645 -97768253 - ALR/Alpha Satellite centromeric -41 408 1 2302 93 3 0 chr13 21976704 21977005 -97767893 - AluSp SINE Alu -11 302 1 432 256 20 20 chr13 21977072 21977282 -97767616 - ALR/Alpha Satellite centromeric 0 210 1 251 265 48 42 chr13 21977556 21977722 -97767176 - ALR/Alpha Satellite centromeric -5 167 1 352 257 42 41 chr13 21977831 21978461 -97766437 - ALR/Alpha Satellite centromeric 0 630 1 1055 41 0 0 chr13 21978468 21978590 -97766308 + AluY SINE Alu 178 299 -12 269 306 19 32 chr13 21978593 21978880 -97766018 - ALR/Alpha Satellite centromeric -5 283 1 3892 238 53 34 chr13 21979021 21980268 -97764630 - L1MEc LINE L1 -2679 3965 2743 2336 119 0 0 chr13 21980268 21980578 -97764320 - AluSg SINE Alu 0 310 1 3892 238 53 34 chr13 21980578 21980830 -97764068 - L1MEc LINE L1 -3901 2743 2465 1997 135 3 10 chr13 21980830 21981127 -97763771 + AluSx SINE Alu 1 295 -17 3892 238 53 34 chr13 21981127 21981151 -97763747 - L1MEc LINE L1 -4179 2465 2443 518 45 0 0 chr13 21981181 21981248 -97763650 - L1PB1 LINE L1 -1 6150 6084 2148 122 0 3 chr13 21981250 21981544 -97763354 - AluSx SINE Alu -10 302 10 416 170 160 10 chr13 21981551 21981651 -97763247 - LTR47A LTR ERVL -77 375 261 738 228 78 25 chr13 21981906 21982200 -97762698 - L1MEc LINE L1 -5159 1666 1169 270 331 122 17 chr13 21982197 21982378 -97762520 - L1MEc LINE L1 -6166 659 460 * 375 188 196 45 chr13 21982440 21982552 -97762346 + L2 LINE L2 3185 3313 0 2133 104 3 7 chr13 21983045 21983333 -97761565 - AluSq SINE Alu -13 300 14 435 294 64 64 chr13 21984098 21984593 -97760305 + L1M2 LINE L1 4915 5415 -780 2298 113 0 0 chr13 21984593 21984904 -97759994 + AluY SINE Alu 1 311 0 435 294 64 64 chr13 21984904 21984942 -97759956 + L1M2 LINE L1 5415 5452 -743 22 70 0 0 chr13 21986550 21986593 -97758305 + AT_rich Low_complexity Low_complexity 1 43 0 193 308 29 29 chr13 21986775 21986879 -97758019 - MIR SINE MIR -93 169 66 192 97 0 0 chr13 21988813 21988844 -97756054 + (CA)n Simple_repeat Simple_repeat 2 32 0 2027 130 33 0 chr13 21989586 21989885 -97755013 + AluSp SINE Alu 1 309 -4 2571 20 7 3 chr13 21989903 21990198 -97754700 + AluY SINE Alu 1 296 -15 2455 257 109 21 chr13 21990199 21991367 -97753531 + HAL1 LINE L1 1232 2502 -5 389 302 12 69 chr13 21992700 21992776 -97752122 - LTR33 LTR ERVL 0 521 442 2563 42 7 13 chr13 21992776 21993083 -97751815 - AluY SINE Alu -6 305 1 389 302 12 69 chr13 21993083 21993241 -97751657 - LTR33 LTR ERVL -79 442 295 2057 93 61 0 chr13 21993751 21994029 -97750869 - AluSc SINE Alu -14 295 1 2635 181 137 108 chr13 21994436 21994856 -97750042 + L1MC3 LINE L1 6662 7069 -716 368 247 11 0 chr13 21994856 21994945 -97749953 + MLT1F1 LTR MaLR 35 124 -443 2635 181 137 108 chr13 21994945 21995388 -97749510 + L1MC3 LINE L1 7069 7640 -145 1503 147 0 16 chr13 21996318 21996563 -97748335 + AluJo SINE Alu 60 300 -12 1984 99 53 11 chr13 21997008 21997292 -97747606 - AluSp SINE Alu -11 302 7 1066 98 0 0 chr13 21997300 21997432 -97747466 - AluSq/x SINE Alu -181 132 1 1743 241 67 30 chr13 21997550 21998210 -97746688 - L1MCc LINE L1 -5086 1337 654 262 176 20 0 chr13 21998314 21998365 -97746533 - MLT1A1 LTR MaLR -4 361 310 1704 187 10 0 chr13 21998367 21998661 -97746237 - AluJo SINE Alu -14 298 2 542 224 26 13 chr13 21998664 21998816 -97746082 - L1MCc LINE L1 -6246 177 24 1165 206 5 0 chr13 22001622 22001821 -97743077 + Tigger3(Golem) DNA MER2_type 1 200 -2829 242 276 60 35 chr13 22002659 22002788 -97742110 - MIR SINE MIR -66 142 21 301 242 96 107 chr13 22003339 22003517 -97741381 + Charlie8 DNA MER1_type 3 178 -2239 250 304 74 45 chr13 22003648 22003891 -97741007 + L2 LINE L2 1962 2211 -1103 210 280 65 19 chr13 22004187 22004294 -97740604 + L2 LINE L2 2290 2401 -913 2096 107 0 14 chr13 22004439 22004728 -97740170 - AluSx SINE Alu -7 305 21 369 274 248 0 chr13 22004898 22005051 -97739847 - MIR SINE MIR -44 218 28 985 185 16 11 chr13 22005999 22006183 -97738715 - AluJo SINE Alu -13 299 115 245 256 9 40 chr13 22007166 22007281 -97737617 + MIR SINE MIR 10 117 -91 985 208 23 32 chr13 22010800 22011021 -97733877 + MER20 DNA MER1_type 1 219 0 2224 117 0 3 chr13 22011894 22012202 -97732696 + AluSx SINE Alu 1 307 -5 481 280 35 55 chr13 22012281 22012481 -97732417 + MIR SINE MIR 1 196 -66 517 250 26 0 chr13 22012483 22012599 -97732299 + MER5A DNA MER1_type 1 119 -70 278 226 32 0 chr13 22012618 22012680 -97732218 + MIR SINE MIR 189 252 -10 1841 83 0 0 chr13 22012685 22012913 -97731985 + AluY SINE Alu 83 310 -1 2271 105 3 0 chr13 22013282 22013587 -97731311 + AluSc SINE Alu 1 306 -3 614 146 48 37 chr13 22013938 22014418 -97730480 + L1MC2 LINE L1 6142 6615 -1170 1963 156 78 23 chr13 22014418 22014764 -97730134 - MLT1A1 LTR MaLR 0 365 1 614 146 48 37 chr13 22014764 22014897 -97730001 + L1MC2 LINE L1 6615 7763 -22 390 21 0 0 chr13 22014929 22014976 -97729922 + (GA)n Simple_repeat Simple_repeat 2 48 0 810 262 41 22 chr13 22015460 22015727 -97729171 + MLT1L LTR MaLR 5 276 -339 4245 108 169 44 chr13 22015865 22016595 -97728303 + LTR12 LTR ERV1 5 825 -1 37223 86 8 8 chr13 22016596 22021574 -97723324 + HERV17 LTR ERV1 17 4954 -1960 632 131 214 16 chr13 22021567 22021819 -97723079 + HERV17 LTR ERV1 703 1141 -5755 * 7003 101 72 59 chr13 22021815 22024193 -97720705 + HERV17 LTR ERV1 504 2438 0 377 289 83 0 chr13 22024333 22024454 -97720444 + MLT1L LTR MaLR 483 613 -2 1697 108 0 12 chr13 22024783 22025024 -97719874 + AluSc SINE Alu 1 238 -71 218 225 0 0 chr13 22025035 22025075 -97719823 + polypurine Low_complexity Low_complexity 4 43 0 479 219 41 16 chr13 22025230 22025353 -97719545 - L1ME2 LINE L1 -21 6143 6018 810 260 44 14 chr13 22025432 22025734 -97719164 - L1ME2 LINE L1 -180 6482 6236 476 353 77 0 chr13 22025734 22026006 -97718892 - LTR16A LTR ERVL 0 450 158 3018 228 33 41 chr13 22026116 22026832 -97718066 - L1ME2 LINE L1 -420 6242 5536 1676 180 28 0 chr13 22026832 22027121 -97717777 - AluJo SINE Alu -14 298 2 3018 228 33 41 chr13 22027121 22027810 -97717088 - L1ME2 LINE L1 -1126 5536 4843 242 222 0 32 chr13 22027814 22027877 -97717021 + CT-rich Low_complexity Low_complexity 3 63 0 1708 259 27 13 chr13 22027893 22028419 -97716479 - L1ME2 LINE L1 -2040 4604 4072 1437 81 0 11 chr13 22028630 22028815 -97716083 - AluY SINE Alu -128 183 1 9468 205 47 67 chr13 22029191 22029249 -97715649 - L1MB7 LINE L1 -16 6562 6504 2149 119 7 0 chr13 22029249 22029544 -97715354 + AluSq SINE Alu 1 297 -16 9468 205 47 67 chr13 22029544 22030692 -97714206 - L1MB7 LINE L1 -74 6504 5335 834 197 0 14 chr13 22030692 22030834 -97714064 - FRAM SINE Alu -14 162 23 9468 205 47 67 chr13 22030834 22030986 -97713912 - L1MB7 LINE L1 -1243 5335 5181 1930 154 7 13 chr13 22030986 22031291 -97713607 + AluSq SINE Alu 1 303 -10 9468 205 47 67 chr13 22031291 22032999 -97711899 - L1MB7 LINE L1 -1397 5181 3441 2424 96 3 0 chr13 22032999 22033311 -97711587 - AluSp SINE Alu 0 313 1 2389 75 3 28 chr13 22033312 22033631 -97711267 - AluY SINE Alu 0 311 1 9468 205 47 67 chr13 22033631 22034464 -97710434 - L1MB7 LINE L1 -3136 3442 2606 23 0 0 0 chr13 22034524 22034547 -97710351 + AT_rich Low_complexity Low_complexity 1 23 0 6609 234 45 28 chr13 22034554 22035881 -97709017 - L1ME2 LINE L1 -3953 2691 1388 2067 145 38 30 chr13 22035881 22036253 -97708645 + THE1C LTR MaLR 1 375 0 6609 234 45 28 chr13 22036253 22037466 -97707432 - L1ME2 LINE L1 -5256 1388 10 545 87 0 0 chr13 22038034 22038103 -97706795 + AluSc SINE Alu 176 244 -65 6289 107 55 31 chr13 22038241 22038373 -97706525 - MER4-int LTR ERV1 -228 6370 6243 2920 9 0 3 chr13 22038373 22038692 -97706206 - AluYb8 SINE Alu 0 318 1 6289 107 55 31 chr13 22038692 22039612 -97705286 - MER4-int LTR ERV1 -355 6243 5290 2143 135 3 3 chr13 22039612 22039924 -97704974 + AluSx SINE Alu 1 312 0 2126 123 7 0 chr13 22040013 22040305 -97704593 - AluSx SINE Alu -18 294 1 670 266 85 86 chr13 22040412 22041142 -97703756 + HAL1 LINE L1 1012 1740 -767 2260 110 7 0 chr13 22041895 22042187 -97702711 + AluSx SINE Alu 1 294 -18 324 239 43 43 chr13 22042205 22042322 -97702576 + HAL1b LINE L1 795 911 -437 834 235 55 20 chr13 22042330 22042585 -97702313 + L1MB8 LINE L1 5915 6178 0 2492 71 0 0 chr13 22042600 22042894 -97702004 + AluY SINE Alu 1 294 -17 2021 98 35 7 chr13 22043819 22044002 -97700896 - AluSq SINE Alu 0 313 119 348 24 0 0 chr13 22044002 22044043 -97700855 + (TTA)n Simple_repeat Simple_repeat 2 42 0 2021 98 35 7 chr13 22044043 22044165 -97700733 - AluSq SINE Alu -194 119 2 343 303 41 0 chr13 22045447 22045569 -97699329 - MIR SINE MIR -94 168 42 273 261 22 11 chr13 22045574 22045666 -97699232 + MIR SINE MIR 167 259 -3 2433 78 0 0 chr13 22045741 22046034 -97698864 + AluY SINE Alu 1 293 -18 364 252 52 22 chr13 22046666 22046801 -97698097 + MIR SINE MIR 122 260 -2 636 217 0 0 chr13 22047041 22047156 -97697742 + FLAM_C SINE Alu 2 116 -27 507 285 104 10 chr13 22048057 22048250 -97696648 + MIR SINE MIR 26 236 -26 1727 159 100 3 chr13 22048398 22048707 -97696191 - MER2 DNA MER2_type 0 345 7 2340 94 3 0 chr13 22048824 22049123 -97695775 + AluSx SINE Alu 1 300 -12 281 211 253 11 chr13 22049517 22049612 -97695286 + L2 LINE L2 3192 3309 -4 222 333 0 15 chr13 22049785 22049851 -97695047 - MIR SINE MIR -103 105 41 21 57 0 0 chr13 22051117 22051152 -97693746 + AT_rich Low_complexity Low_complexity 1 35 0 2546 66 0 0 chr13 22051175 22051476 -97693422 - AluY SINE Alu -10 301 1 263 214 9 98 chr13 22052129 22052241 -97692657 + MIR SINE MIR 79 180 -82 227 276 238 9 chr13 22052227 22052332 -97692566 - MIR3 SINE MIR -40 168 40 * 2391 77 3 3 chr13 22053543 22053842 -97691056 + AluY SINE Alu 1 299 -12 804 161 0 0 chr13 22054108 22054232 -97690666 - FRAM SINE Alu -16 160 37 1046 183 81 166 chr13 22054720 22055445 -97689453 - MER4A LTR ERV1 0 664 1 241 356 44 0 chr13 22055545 22055635 -97689263 - L2 LINE L2 -31 3241 3148 2356 93 3 0 chr13 22056438 22056729 -97688169 + AluSp SINE Alu 1 292 -21 1588 171 49 14 chr13 22057359 22057646 -97687252 + AluJo SINE Alu 1 297 -15 193 219 0 137 chr13 22057945 22058018 -97686880 - L2 LINE L2 -1 3312 3250 191 173 19 0 chr13 22058645 22058697 -97686201 + A-rich Low_complexity Low_complexity 2 54 0 258 32 0 0 chr13 22058775 22058806 -97686092 + (CA)n Simple_repeat Simple_repeat 2 32 0 296 155 3 0 chr13 22058890 22058939 -97685959 + AluS SINE Alu 23 64 -239 240 160 51 40 chr13 22059053 22059228 -97685670 + (CA)n Simple_repeat Simple_repeat 1 177 0 418 147 55 16 chr13 22059292 22059738 -97685160 + (CA)n Simple_repeat Simple_repeat 1 463 0 197 180 52 23 chr13 22060017 22060189 -97684709 + (CA)n Simple_repeat Simple_repeat 2 178 0 396 183 40 23 chr13 22060216 22060525 -97684373 + (CA)n Simple_repeat Simple_repeat 1 314 0 428 247 54 129 chr13 22060645 22061054 -97683844 - L1ME LINE L1 -415 5706 5317 339 121 17 0 chr13 22061080 22061138 -97683760 - AluSp/q SINE Alu -4 299 241 4665 165 45 49 chr13 22061241 22062297 -97682601 - L1 LINE L1 -1206 4940 3889 1670 137 27 57 chr13 22062299 22062599 -97682299 - AluSq SINE Alu -22 291 1 1543 197 10 10 chr13 22062602 22062912 -97681986 - AluJo SINE Alu -2 310 1 516 225 0 0 chr13 22064027 22064156 -97680742 + (TA)n Simple_repeat Simple_repeat 2 130 0 232 276 46 11 chr13 22064157 22064244 -97680654 + L1MC4 LINE L1 6614 6703 -1339 236 140 0 105 chr13 22064266 22064323 -97680575 + L1MC4 LINE L1 6652 6702 -1340 208 218 0 73 chr13 22064327 22064382 -97680516 + (TATATG)n Simple_repeat Simple_repeat 6 56 0 253 253 0 63 chr13 22064382 22064477 -97680421 - L1MC4 LINE L1 -1339 6703 6615 192 40 0 0 chr13 22064485 22064510 -97680388 + (TG)n Simple_repeat Simple_repeat 2 26 0 2437 268 79 56 chr13 22064525 22065287 -97679611 + MLT-int LTR MaLR 581 1359 -376 2291 92 3 0 chr13 22065425 22065707 -97679191 + AluSp SINE Alu 6 288 -25 695 276 103 49 chr13 22065911 22066093 -97678805 - L2 LINE L2 -4 3309 3138 1544 180 48 45 chr13 22066093 22066404 -97678494 - AluJo SINE Alu 0 312 1 695 276 103 49 chr13 22066404 22066590 -97678308 - L2 LINE L2 -175 3138 2921 184 135 19 19 chr13 22066701 22066753 -97678145 + (TTTA)n Simple_repeat Simple_repeat 1 52 0 678 259 4 98 chr13 22066861 22067050 -97677848 - MIR SINE MIR -10 252 92 1910 110 8 4 chr13 22067050 22067314 -97677584 + AluSx SINE Alu 21 285 -27 678 259 4 98 chr13 22067314 22067379 -97677519 - MIR SINE MIR -170 92 22 928 221 35 0 chr13 22067406 22067605 -97677293 - MER63A DNA MER1_type 0 210 5 316 289 75 23 chr13 22067790 22067963 -97676935 + MIR SINE MIR 2 183 -79 1217 175 185 9 chr13 22069791 22070074 -97674824 + L1MA5A LINE L1 5943 6287 -10 506 97 138 0 chr13 22070117 22070240 -97674658 + L1PA8 LINE L1 5991 6153 -1 457 295 29 6 chr13 22070324 22070497 -97674401 + L1MB3 LINE L1 6007 6183 0 204 320 0 13 chr13 22071203 22071278 -97673620 - MIR SINE MIR 0 262 189 652 210 120 30 chr13 22071282 22071449 -97673449 - AluJo SINE Alu -129 183 2 306 247 37 0 chr13 22071453 22071534 -97673364 - MIR SINE MIR -110 152 69 240 262 48 48 chr13 22071798 22071882 -97673016 + L2 LINE L2 3188 3271 -1 184 366 108 48 chr13 22073205 22073538 -97671360 + L3b LINE CR1 1146 1498 -85 13460 116 54 30 chr13 22074149 22074490 -97670408 - Tigger1 DNA MER2_type 0 2418 2087 2342 92 0 7 chr13 22074490 22074785 -97670113 + AluSx SINE Alu 1 293 -19 13460 116 54 30 chr13 22074785 22075744 -97669154 - Tigger1 DNA MER2_type -331 2087 1153 2381 77 3 7 chr13 22075744 22076044 -97668854 + AluSc SINE Alu 1 299 -10 13460 116 54 30 chr13 22076044 22076943 -97667955 - Tigger1 DNA MER2_type -1265 1153 165 260 250 0 0 chr13 22076916 22076964 -97667934 + AluJb SINE Alu 203 250 -52 * 1252 169 5 5 chr13 22076964 22077177 -97667721 + AluJo SINE Alu 85 297 -15 1167 144 0 21 chr13 22077187 22077375 -97667523 - Tigger1 DNA MER2_type -2213 205 22 354 231 88 27 chr13 22078335 22078482 -97666416 - MER45A DNA AcHobo -20 158 3 2651 18 0 0 chr13 22079543 22079851 -97665047 + AluY SINE Alu 1 308 0 183 80 0 0 chr13 22079850 22079875 -97665023 + (TA)n Simple_repeat Simple_repeat 2 26 0 761 259 20 51 chr13 22080098 22080453 -97664445 - L1M4 LINE L1 -885 5330 4987 3907 93 28 2 chr13 22080553 22081093 -97663805 + MER41A LTR ERV1 1 554 0 313 290 109 11 chr13 22081095 22081278 -97663620 - L1M4 LINE L1 -1369 4846 4646 3315 157 52 7 chr13 22081357 22081957 -97662941 - LTR24C LTR ERV1 -8 627 1 387 263 94 58 chr13 22081976 22082500 -97662398 - L1MEc LINE L1 -3655 2560 2049 2495 61 0 0 chr13 22082503 22082798 -97662100 - AluY SINE Alu -16 295 1 421 202 101 8 chr13 22082954 22083073 -97661825 - L1MA10 LINE L1 0 6334 6205 287 147 15 147 chr13 22083299 22083367 -97661531 - AluS SINE Alu -248 60 2 2142 121 0 0 chr13 22083827 22084107 -97660791 - AluSx SINE Alu -32 280 1 229 145 15 0 chr13 22084481 22084523 -97660375 + MIR3 SINE MIR 111 154 -54 2201 159 54 7 chr13 22084647 22085055 -97659843 - L1MB3 LINE L1 -8 6175 5749 180 319 0 14 chr13 22085322 22085391 -97659507 + MIR3 SINE MIR 12 79 -129 237 300 100 15 chr13 22085425 22085555 -97659343 + MIR SINE MIR 66 206 -56 6373 138 41 65 chr13 22085619 22086126 -97658772 - Tigger3b DNA MER2_type -1802 1226 708 2390 92 0 0 chr13 22086126 22086420 -97658478 - AluY SINE Alu -17 294 1 6373 138 41 65 chr13 22086420 22086825 -97658073 - Tigger3b DNA MER2_type -2320 708 350 2392 91 0 0 chr13 22086825 22087122 -97657776 - AluSx SINE Alu -14 298 2 6373 138 41 65 chr13 22087122 22087464 -97657434 - Tigger3b DNA MER2_type -2678 350 1 298 160 85 53 chr13 22087792 22087886 -97657012 - MER4C LTR ERV1 -2 463 367 4053 112 4 0 chr13 22087886 22088438 -97656460 - MER41A LTR ERV1 0 554 1 10627 109 33 24 chr13 22088438 22091498 -97653400 - MER41A-int LTR ERV1 -2 5944 2606 3954 141 61 21 chr13 22091470 22092168 -97652730 - MER41A-int LTR ERV1 -5313 633 1 * 4256 96 9 5 chr13 22092168 22092720 -97652178 - MER41A LTR ERV1 0 554 1 381 229 10 21 chr13 22092720 22092816 -97652082 - MER4C LTR ERV1 -95 370 276 * 434 228 79 78 chr13 22092806 22093125 -97651773 - MER4C LTR ERV1 -167 430 1 1468 185 14 20 chr13 22094542 22094834 -97650064 - AluJo SINE Alu -22 290 1 1303 113 128 93 chr13 22095735 22095992 -97648906 + AluSx SINE Alu 24 289 -23 29 0 0 0 chr13 22095992 22096021 -97648877 + AT_rich Low_complexity Low_complexity 1 29 0 1865 206 92 25 chr13 22096129 22096696 -97648202 + pTR5 LTR ERV1 741 1345 -1093 4724 117 92 47 chr13 22096711 22097498 -97647400 + LTR12 LTR ERV1 5 826 0 537 168 8 130 chr13 22098160 22098291 -97646607 - FLAM_A SINE Alu -20 122 8 822 93 0 70 chr13 22102615 22102744 -97642154 - FRAM SINE Alu -14 162 43 733 143 0 24 chr13 22104180 22104306 -97640592 + FRAM SINE Alu 49 171 -5 23 33 0 0 chr13 22105023 22105053 -97639845 + AT_rich Low_complexity Low_complexity 1 30 0 1476 161 4 11 chr13 22106678 22106939 -97637959 + L1MB3 LINE L1 5917 6175 -8 219 69 0 0 chr13 22107341 22107370 -97637528 + (TA)n Simple_repeat Simple_repeat 2 30 0 237 83 0 0 chr13 22107404 22107440 -97637458 + (CA)n Simple_repeat Simple_repeat 1 36 0 228 176 0 20 chr13 22107527 22107578 -97637320 + L1ME4a LINE L1 6072 6121 0 4459 206 70 38 chr13 22107815 22109014 -97635884 + L1MC4 LINE L1 6806 8042 0 1425 175 72 0 chr13 22109502 22109765 -97635133 + MER7A DNA MER2_type 2 281 -65 14345 165 20 3 chr13 22110132 22113444 -97631454 + L1PA14 LINE L1 2790 6157 -4 21 71 0 0 chr13 22113601 22113643 -97631255 + AT_rich Low_complexity Low_complexity 1 42 0 2550 141 47 30 chr13 22114411 22114687 -97630211 + Tigger2a DNA MER2_type 1 288 -2420 2275 99 3 0 chr13 22114687 22114990 -97629908 + AluSg SINE Alu 1 304 -6 2550 141 47 30 chr13 22114990 22115140 -97629758 + Tigger2a DNA MER2_type 288 434 0 270 260 213 7 chr13 22116086 22116236 -97628662 + MIR SINE MIR 2 182 -80 1382 181 22 53 chr13 22116568 22116639 -97628259 - MER33 DNA MER1_type -2274 311 239 774 199 122 0 chr13 22116639 22116795 -97628103 + FAM SINE Alu 1 175 0 1382 181 22 53 chr13 22116795 22117043 -97627855 - MER33 DNA MER1_type -2346 239 2 293 47 23 0 chr13 22118699 22118742 -97626156 + (CAAAAA)n Simple_repeat Simple_repeat 2 45 0 248 323 30 42 chr13 22119671 22119790 -97625108 - MIR SINE MIR -62 146 23 454 243 64 55 chr13 22120690 22121105 -97623793 + L2 LINE L2 2230 3188 -125 277 272 112 24 chr13 22121379 22121548 -97623350 + MLT1J2 LTR MaLR 264 447 -3 293 278 156 0 chr13 22121564 22121654 -97623244 + L2 LINE L2 3210 3313 0 206 378 12 24 chr13 22122496 22122578 -97622320 - MIR SINE MIR -162 100 20 189 0 0 0 chr13 22122629 22122650 -97622248 + (A)n Simple_repeat Simple_repeat 1 21 0 2619 155 38 8 chr13 22123730 22124207 -97620691 - L1MB5 LINE L1 0 6174 5684 10628 205 25 18 chr13 22124460 22126800 -97618098 + L1MB4 LINE L1 2669 5038 -1142 1632 176 47 4 chr13 22126800 22127078 -97617820 + AluJo SINE Alu 1 290 -22 10628 205 25 18 chr13 22127078 22128229 -97616669 + L1MB4 LINE L1 5038 6180 0 1038 296 101 41 chr13 22128237 22128873 -97616025 - L2 LINE L2 -556 2758 2085 1975 138 10 0 chr13 22128989 22129279 -97615619 + AluSx SINE Alu 1 293 -19 2932 89 14 5 chr13 22129883 22130253 -97614645 - THE1C LTR MaLR 0 375 3 786 264 74 4 chr13 22131897 22132128 -97612770 + MIR SINE MIR 12 258 -4 1372 204 148 0 chr13 22132393 22132711 -97612187 + MER47A DNA MER2_type 2 366 0 2025 132 10 10 chr13 22132860 22133156 -97611742 + AluSx SINE Alu 1 296 -16 2174 133 0 10 chr13 22135078 22135380 -97609518 - AluSx SINE Alu -13 299 1 27 29 0 0 chr13 22137534 22137568 -97607330 + AT_rich Low_complexity Low_complexity 1 34 0 193 226 38 0 chr13 22137675 22137728 -97607170 + L2 LINE L2 2640 2694 -620 186 343 49 10 chr13 22137811 22137913 -97606985 + L2 LINE L2 2987 3092 -221 550 245 19 57 chr13 22138487 22138646 -97606252 + L1ME1 LINE L1 6031 6183 -1 21 82 0 0 chr13 22138658 22138707 -97606191 + AT_rich Low_complexity Low_complexity 1 49 0 2276 101 0 0 chr13 22138812 22139100 -97605798 + AluSx SINE Alu 1 288 -24 24 32 0 0 chr13 22139272 22139303 -97605595 + AT_rich Low_complexity Low_complexity 1 31 0 2249 125 0 0 chr13 22140613 22140924 -97603974 - AluSq SINE Alu -2 311 1 1502 163 98 14 chr13 22141102 22141378 -97603520 + AluJb SINE Alu 1 299 -13 22 35 0 0 chr13 22143339 22143368 -97601530 + AT_rich Low_complexity Low_complexity 1 29 0 2021 153 3 13 chr13 22144155 22144468 -97600430 - AluJb SINE Alu -2 310 1 290 304 39 10 chr13 22144794 22144896 -97600002 - MIR SINE MIR -120 142 38 216 158 0 0 chr13 22145685 22145723 -97599175 + (CATATA)n Simple_repeat Simple_repeat 6 43 0 324 0 0 0 chr13 22148267 22148303 -97596595 + (CA)n Simple_repeat Simple_repeat 1 36 0 25 0 0 0 chr13 22148554 22148579 -97596319 + AT_rich Low_complexity Low_complexity 1 25 0 614 286 71 96 chr13 22148580 22148863 -97596035 + L1ME4a LINE L1 5380 5669 -452 2566 56 0 0 chr13 22148863 22149167 -97595731 + AluY SINE Alu 1 304 -7 614 286 71 96 chr13 22149167 22149439 -97595459 + L1ME4a LINE L1 5669 5939 -182 2368 87 0 3 chr13 22149439 22149737 -97595161 + AluSq SINE Alu 1 297 -16 614 286 71 96 chr13 22149737 22149844 -97595054 + L1ME4a LINE L1 5939 6047 -74 5128 159 69 33 chr13 22150150 22151544 -97593354 + L1MB2 LINE L1 4693 6170 -1 32 0 0 0 chr13 22152035 22152067 -97592831 + AT_rich Low_complexity Low_complexity 1 32 0 2043 110 3 23 chr13 22152068 22152368 -97592530 - AluSg SINE Alu -16 294 1 1559 150 8 26 chr13 22152524 22152791 -97592107 - AluJb SINE Alu -12 300 39 399 316 7 15 chr13 22153477 22153613 -97591285 + MIR SINE MIR 56 190 -72 558 292 22 15 chr13 22153811 22154016 -97590882 - MIR SINE MIR 0 262 56 4607 152 29 51 chr13 22154923 22155367 -97589531 - L1MB8 LINE L1 0 6178 5726 1413 152 105 99 chr13 22155367 22155729 -97589169 - MLT1A1 LTR MaLR 0 365 2 4607 152 29 51 chr13 22155729 22156394 -97588504 - L1MB8 LINE L1 -452 5726 5099 338 324 179 14 chr13 22156595 22156802 -97588096 + MIR SINE MIR 12 252 -10 626 290 63 90 chr13 22157224 22157612 -97587286 + L2 LINE L2 2817 3192 -121 2208 99 17 3 chr13 22157612 22157930 -97586968 + AluSp SINE Alu 1 322 0 626 290 63 90 chr13 22157930 22158049 -97586849 + L2 LINE L2 3192 3313 0 323 283 99 13 chr13 22158053 22158205 -97586693 - L1M LINE L1 -734 5428 5264 599 297 82 0 chr13 22159474 22159706 -97585192 - MIR SINE MIR -7 255 5 222 37 0 0 chr13 22159721 22159748 -97585150 + (TA)n Simple_repeat Simple_repeat 1 27 0 230 262 0 16 chr13 22160930 22160991 -97583907 + GA-rich Low_complexity Low_complexity 2 61 0 594 224 122 0 chr13 22161089 22161236 -97583662 + MIR SINE MIR 49 213 -49 251 225 12 38 chr13 22162529 22162609 -97582289 - L1MC/D LINE L1 -1907 5901 5824 184 224 122 0 chr13 22162620 22162669 -97582229 + L2 LINE L2 3169 3223 -49 1602 208 128 2 chr13 22162876 22163290 -97581608 + MER31B LTR ERV1 1 466 0 294 95 0 0 chr13 22163339 22163381 -97581517 + (TG)n Simple_repeat Simple_repeat 2 43 0 441 169 36 26 chr13 22165732 22165902 -97578996 - MER3 DNA MER1_type 0 209 6 468 258 88 25 chr13 22165970 22166129 -97578769 + MIR SINE MIR 59 227 -35 183 80 0 0 chr13 22167043 22167068 -97577830 + (TTTA)n Simple_repeat Simple_repeat 2 26 0 1986 122 4 0 chr13 22167068 22167339 -97577559 - AluSx SINE Alu -40 272 1 26 0 0 0 chr13 22168122 22168148 -97576750 + AT_rich Low_complexity Low_complexity 1 26 0 11448 200 68 17 chr13 22168369 22173433 -97571465 - L1MC1 LINE L1 -16 6597 1281 3811 184 144 4 chr13 22173462 22173952 -97570946 - L1MC1 LINE L1 -5465 961 541 185 0 0 39 chr13 22173952 22173978 -97570920 + (TTTTG)n Simple_repeat Simple_repeat 1 25 0 3811 184 144 4 chr13 22173978 22174312 -97570586 - L1MC1 LINE L1 -5885 541 21 2733 100 65 105 chr13 22174548 22175178 -97569720 + MER4B LTR ERV1 3 779 0 1703 69 0 0 chr13 22176111 22176314 -97568584 - L1PA7 LINE L1 -18 6136 5934 22987 121 15 86 chr13 22176318 22180681 -97564217 - L1P LINE L1 -2079 4067 12 2296 112 0 3 chr13 22182469 22182774 -97562124 + AluSc SINE Alu 4 307 -2 253 224 41 61 chr13 22182888 22182986 -97561912 - L3b LINE CR1 -136 1447 1352 2063 147 0 22 chr13 22183001 22183320 -97561578 - AluSx SINE Alu 0 312 1 2298 103 3 0 chr13 22183856 22184158 -97560740 + AluSq SINE Alu 1 303 -10 24 0 0 0 chr13 22184491 22184515 -97560383 + AT_rich Low_complexity Low_complexity 1 24 0 866 171 91 6 chr13 22184747 22184923 -97559975 - MIR SINE MIR -28 234 44 302 256 78 0 chr13 22186094 22186184 -97558714 + MIR SINE MIR 130 226 -36 696 179 40 104 chr13 22186225 22186426 -97558472 + MIR SINE MIR 67 254 -8 231 287 96 17 chr13 22186625 22186740 -97558158 - MIR SINE MIR -21 241 118 200 231 31 108 chr13 22186952 22187017 -97557881 - L2 LINE L2 0 3272 3213 24 0 0 0 chr13 22187252 22187276 -97557622 + AT_rich Low_complexity Low_complexity 1 24 0 26 0 0 0 chr13 22187289 22187315 -97557583 + AT_rich Low_complexity Low_complexity 1 26 0 416 334 46 90 chr13 22187630 22188174 -97556724 + L2 LINE L2 2684 3271 -1 53 49 0 0 chr13 22190879 22190960 -97553938 + AT_rich Low_complexity Low_complexity 1 81 0 261 266 32 53 chr13 22191817 22191911 -97552987 + MIR3 SINE MIR 63 154 -54 252 263 0 62 chr13 22193026 22193106 -97551792 - L2 LINE L2 -12 3260 3186 961 167 25 20 chr13 22193310 22193508 -97551390 - L1MB2 LINE L1 -9 6162 5964 1773 159 42 88 chr13 22193507 22193787 -97551111 - MER47A DNA MER2_type -1957 366 107 2129 97 100 60 chr13 22193787 22194137 -97550761 - THE1B LTR MaLR 0 364 1 1773 159 42 88 chr13 22194137 22194240 -97550658 - MER47A DNA MER2_type -2216 107 1 2474 130 46 30 chr13 22194240 22194679 -97550219 - L1MB2 LINE L1 -217 5966 5521 1577 268 136 23 chr13 22194712 22195123 -97549775 - L1MC2 LINE L1 -17 8025 7662 2204 169 5 23 chr13 22195123 22195520 -97549378 - MLT1B LTR MaLR 0 390 1 1577 268 136 23 chr13 22195520 22195834 -97549064 - L1MC2 LINE L1 -380 7662 6254 396 302 191 31 chr13 22196091 22196316 -97548582 - MIR SINE MIR 0 262 2 313 285 120 48 chr13 22196839 22197003 -97547895 - MIR SINE MIR -61 147 5 613 268 68 0 chr13 22197139 22197344 -97547554 + MIR SINE MIR 44 262 0 263 189 105 102 chr13 22197643 22197848 -97547050 - MLT1I LTR MaLR -214 335 98 446 258 39 16 chr13 22198088 22198216 -97546682 + MER94 DNA DNA 1 131 -3 574 352 86 12 chr13 22198254 22198581 -97546317 + L3 LINE CR1 983 1333 -244 505 257 51 2 chr13 22198587 22198750 -97546148 + MIR SINE MIR 19 192 -68 1378 215 11 57 chr13 22198759 22198803 -97546095 - MLT2B3 LTR ERVL -1 553 509 423 0 0 0 chr13 22198803 22198850 -97546048 + (TG)n Simple_repeat Simple_repeat 2 48 0 1378 215 11 57 chr13 22198850 22199158 -97545740 - MLT2B3 LTR ERVL -45 509 217 542 167 9 0 chr13 22199158 22199266 -97545632 + GA-rich Low_complexity Low_complexity 1 109 0 1122 134 76 54 chr13 22199266 22199490 -97545408 - MLT2B2 LTR ERVL -285 230 2 543 277 36 54 chr13 22200018 22200242 -97544656 - MER102b DNA MER1_type -45 296 77 2216 101 0 3 chr13 22200497 22200793 -97544105 - AluSx SINE Alu -17 295 1 540 224 255 19 chr13 22201094 22201255 -97543643 + MER63A DNA MER1_type 12 210 0 389 250 53 88 chr13 22202194 22202353 -97542545 + MER87 LTR ERV1 1 148 -393 777 239 98 77 chr13 22202476 22202945 -97541953 + LTR26 LTR ERV1 115 593 -10 1797 133 25 3 chr13 22202976 22203262 -97541636 + AluSx SINE Alu 1 292 -20 231 313 42 10 chr13 22203338 22203434 -97541464 + L2 LINE L2 3215 3313 0 441 304 77 14 chr13 22203932 22204139 -97540759 - MIR SINE MIR -19 243 24 2658 215 16 23 chr13 22204538 22205096 -97539802 + MLT2B3 LTR ERVL 1 554 0 250 323 55 81 chr13 22205915 22206150 -97538748 + L2 LINE L2 3037 3265 -7 2071 74 0 4 chr13 22206201 22206471 -97538427 + AluY SINE Alu 36 304 -7 2013 138 0 3 chr13 22206489 22206794 -97538104 + AluSx SINE Alu 3 306 -6 2005 126 13 3 chr13 22206794 22207096 -97537802 + AluSq SINE Alu 1 305 -8 198 326 12 23 chr13 22207438 22207524 -97537374 - MIR SINE MIR -43 219 135 1652 166 7 0 chr13 22211216 22211512 -97533386 + AluSx SINE Alu 1 298 -14 509 318 104 33 chr13 22211797 22211941 -97532957 - L1M4 LINE L1 -832 5314 5182 1788 150 27 0 chr13 22211941 22212234 -97532664 - AluJo SINE Alu -11 301 1 509 318 104 33 chr13 22212234 22212667 -97532231 - L1M4 LINE L1 -964 5182 4696 382 233 90 65 chr13 22212710 22212989 -97531909 - L1M4 LINE L1 -1538 4608 4323 1998 113 17 0 chr13 22213252 22213543 -97531355 - AluSq SINE Alu -15 298 3 468 202 52 88 chr13 22213551 22213734 -97531164 - L1M4 LINE L1 -2884 3262 3091 2026 97 3 7 chr13 22213734 22214023 -97530875 - AluSx SINE Alu -24 288 1 468 202 52 88 chr13 22214023 22214111 -97530787 - L1M4 LINE L1 -3055 3091 3001 804 227 92 14 chr13 22214111 22214393 -97530505 - MER113 DNA MER1_type? -190 331 28 2256 61 41 0 chr13 22215387 22215680 -97529218 - AluY SINE Alu -6 305 1 287 263 120 38 chr13 22215753 22215886 -97529012 + Charlie8 DNA MER1_type 138 281 -2136 26 0 0 0 chr13 22217023 22217049 -97527849 + AT_rich Low_complexity Low_complexity 1 26 0 3872 93 8 0 chr13 22217058 22217586 -97527312 + L1PB1 LINE L1 5620 6151 0 2206 255 46 28 chr13 22218359 22219113 -97525785 + L1ME1 LINE L1 5393 6160 -6 611 152 27 0 chr13 22219132 22219244 -97525654 - L1MA5 LINE L1 -6 6294 6180 2314 43 0 65 chr13 22219246 22219569 -97525329 - AluY SINE Alu -9 302 1 2317 52 0 58 chr13 22220222 22220552 -97524346 + AluY SINE Alu 1 311 0 23 0 0 0 chr13 22221625 22221648 -97523250 + GC_rich Low_complexity Low_complexity 1 23 0 197 227 0 0 chr13 22223004 22223048 -97521850 + L2 LINE L2 3270 3313 0 645 174 91 0 chr13 22224429 22224550 -97520348 + AluJ SINE Alu 2 133 -169 209 159 23 0 chr13 22224577 22224621 -97520277 + GA-rich Low_complexity Low_complexity 1 45 0 1976 88 63 0 chr13 22224635 22224920 -97519978 + AluSq SINE Alu 1 303 -10 929 169 7 0 chr13 22224920 22225074 -97519824 + AluJ SINE Alu 134 288 -24 208 337 48 12 chr13 22225117 22225200 -97519698 - L2 LINE L2 -5 3308 3223 21 0 0 0 chr13 22225609 22225630 -97519268 + AT_rich Low_complexity Low_complexity 1 21 0 2746 164 71 9 chr13 22225630 22226178 -97518720 - L1MB3 LINE L1 -1 6182 5601 235 239 11 68 chr13 22226844 22226932 -97517966 + (CCCA)n Simple_repeat Simple_repeat 2 84 0 188 267 78 44 chr13 22226934 22227024 -97517874 - L2 LINE L2 -16 3256 3164 345 62 0 0 chr13 22227796 22227844 -97517054 + (TG)n Simple_repeat Simple_repeat 2 49 0 22 35 0 0 chr13 22227872 22227901 -97516997 + AT_rich Low_complexity Low_complexity 1 29 0 409 231 52 23 chr13 22228120 22228331 -97516567 + Charlie7 DNA MER1_type 2317 2612 0 218 269 0 30 chr13 22228375 22228442 -97516456 + G-rich Low_complexity Low_complexity 4 68 0 725 238 168 43 chr13 22229583 22229813 -97515085 - MER58B DNA MER1_type -2079 341 63 1752 169 10 7 chr13 22229813 22230121 -97514777 + AluJo SINE Alu 1 309 -3 725 238 168 43 chr13 22230121 22230193 -97514705 - MER58B DNA MER1_type -2357 63 1 367 346 82 0 chr13 22230340 22230522 -97514376 - MIR SINE MIR -52 210 14 1763 178 0 0 chr13 22230912 22231210 -97513688 - AluJb SINE Alu -14 298 1 755 180 0 0 chr13 22231246 22231374 -97513524 - FLAM_C SINE Alu -3 130 3 436 117 59 3 chr13 22232744 22232829 -97512069 - L1PA8 LINE L1 -2 6172 6085 769 239 188 35 chr13 22233127 22233525 -97511373 - MLT1C LTR MaLR -3 464 6 1483 200 51 34 chr13 22233526 22233881 -97511017 - MLT1C-int LTR MaLR -1 1370 1010 24 0 0 0 chr13 22234446 22234470 -97510428 + GC_rich Low_complexity Low_complexity 1 24 0 181 326 132 23 chr13 22236053 22236182 -97508716 - L2 LINE L2 -20 3293 3151 407 344 78 9 chr13 22236192 22236410 -97508488 + MIR SINE MIR 20 252 -10 312 316 85 17 chr13 22236640 22236817 -97508081 - MIR SINE MIR 0 262 74 204 97 0 0 chr13 22236862 22236893 -97508005 + (TA)n Simple_repeat Simple_repeat 2 32 0 842 137 0 0 chr13 22237781 22237912 -97506986 - FLAM_C SINE Alu -1 142 12 1609 181 52 6 chr13 22238299 22238625 -97506273 - MER2 DNA MER2_type -2 342 2 1235 104 6 0 chr13 22239797 22239980 -97504918 + AluY SINE Alu 125 308 -3 281 223 107 27 chr13 22240529 22240641 -97504257 + MIR SINE MIR 87 207 -55 254 326 70 0 chr13 22242220 22242306 -97502592 - MIR SINE MIR -150 112 21 1067 167 0 36 chr13 22242329 22242521 -97502377 + AluJb SINE Alu 123 307 -5 186 43 0 0 chr13 22242522 22242545 -97502353 + (GGAA)n Simple_repeat Simple_repeat 1 23 0 888 279 152 0 chr13 22242833 22243156 -97501742 + L2 LINE L2 2923 3294 -19 23 33 0 0 chr13 22244074 22244104 -97500794 + AT_rich Low_complexity Low_complexity 1 30 0 324 226 96 26 chr13 22244436 22244551 -97500347 - MER103 DNA DNA -1 165 43 293 285 71 52 chr13 22244800 22245168 -97499730 + L1 LINE L1 4575 4949 -1197 23 33 0 0 chr13 22245181 22245211 -97499687 + AT_rich Low_complexity Low_complexity 1 30 0 304 224 0 126 chr13 22245352 22245526 -97499372 + L1 LINE L1 5222 5373 -773 304 316 53 0 chr13 22245633 22245747 -97499151 + MIR SINE MIR 109 228 -34 533 209 143 33 chr13 22246064 22246274 -97498624 + L1ME4a LINE L1 5807 6039 -82 315 0 0 0 chr13 22246839 22246874 -97498024 + (TG)n Simple_repeat Simple_repeat 2 36 0 321 212 156 56 chr13 22247454 22247580 -97497318 - MIR3 SINE MIR -1 207 69 213 185 46 46 chr13 22248340 22248405 -97496493 - MIR SINE MIR -55 207 143 619 83 12 12 chr13 22249365 22249449 -97495449 - AluS SINE Alu -228 85 2 822 167 43 0 chr13 22250598 22250736 -97494162 - FRAM SINE Alu -29 147 4 2335 105 0 0 chr13 22250801 22251106 -97493792 - AluSx SINE Alu -6 306 2 33 90 0 0 chr13 22251233 22251322 -97493576 + AT_rich Low_complexity Low_complexity 1 89 0 223 322 42 42 chr13 22253304 22253447 -97491451 + L2 LINE L2 2902 3044 -228 38 0 0 0 chr13 22253670 22253708 -97491190 + AT_rich Low_complexity Low_complexity 1 38 0 211 281 67 11 chr13 22253719 22253808 -97491090 - MIR SINE MIR -51 211 118 1659 268 180 23 chr13 22253931 22255171 -97489727 - L2 LINE L2 -1 3312 1891 2235 111 0 3 chr13 22255659 22255957 -97488941 + AluSx SINE Alu 1 297 -15 2023 130 0 14 chr13 22256877 22257170 -97487728 - AluSx SINE Alu -13 299 11 2226 95 113 9 chr13 22257963 22258290 -97486608 - MER46B DNA MER2_type 0 236 1 970 133 27 0 chr13 22260519 22260669 -97484229 + MER5A DNA MER1_type 1 154 -35 185 0 40 0 chr13 22260937 22260962 -97483936 + (TGAA)n Simple_repeat Simple_repeat 4 29 0 230 347 45 40 chr13 22260963 22261139 -97483759 + L2 LINE L2 2682 2858 -456 231 350 65 24 chr13 22261328 22261451 -97483447 + L2 LINE L2 2960 3087 -185 213 323 0 0 chr13 22261829 22261894 -97483004 - MIR SINE MIR -3 259 195 524 244 7 30 chr13 22261919 22262054 -97482844 - L2 LINE L2 -1 3312 3181 250 240 0 0 chr13 22262049 22262099 -97482799 - MIR SINE MIR -200 62 13 * 463 70 14 0 chr13 22263130 22263201 -97481697 - AluSc SINE Alu -2 307 236 1204 180 0 42 chr13 22264022 22264261 -97480637 - AluJo SINE Alu 0 312 84 44 84 0 0 chr13 22264602 22264709 -97480189 + AT_rich Low_complexity Low_complexity 1 107 0 527 164 52 124 chr13 22264918 22265195 -97479703 + MER66A LTR ERV1 163 304 -174 32 26 0 0 chr13 22266444 22266483 -97478415 + AT_rich Low_complexity Low_complexity 1 39 0 2292 125 0 0 chr13 22266707 22267019 -97477879 - AluSx SINE Alu 0 312 1 21 0 0 0 chr13 22267241 22267262 -97477636 + AT_rich Low_complexity Low_complexity 1 21 0 180 0 0 0 chr13 22267420 22267440 -97477458 + (A)n Simple_repeat Simple_repeat 1 20 0 1231 56 0 0 chr13 22267443 22267585 -97477313 - AluY SINE Alu -169 142 1 198 191 0 0 chr13 22267649 22267691 -97477207 + CT-rich Low_complexity Low_complexity 4 45 0 2418 42 0 51 chr13 22268118 22268430 -97476468 + AluY SINE Alu 1 296 -15 249 246 35 0 chr13 22269880 22269937 -97474961 - L2 LINE L2 -3 3269 3211 34 84 0 0 chr13 22270007 22270090 -97474808 + AT_rich Low_complexity Low_complexity 1 83 0 2193 109 17 0 chr13 22271083 22271376 -97473522 - AluSx SINE Alu -14 298 1 981 186 25 0 chr13 22271943 22272104 -97472794 - FAM SINE Alu -9 166 2 1647 169 20 10 chr13 22272120 22272416 -97472482 + AluJb SINE Alu 2 300 -12 1847 168 0 3 chr13 22273583 22273887 -97471011 + AluJb SINE Alu 1 303 -9 23 0 0 0 chr13 22274045 22274068 -97470830 + AT_rich Low_complexity Low_complexity 1 23 0 1049 172 78 5 chr13 22274130 22274334 -97470564 - L1PA6 LINE L1 -25 6129 5911 1036 125 0 36 chr13 22274475 22274641 -97470257 + MER4B LTR ERV1 362 521 -89 3568 100 8 60 chr13 22274641 22275283 -97469615 + MER4B LTR ERV1 1 779 0 472 63 16 0 chr13 22275284 22275347 -97469551 + MER4B LTR ERV1 547 610 0 180 0 0 0 chr13 22276021 22276041 -97468857 + (TC)n Simple_repeat Simple_repeat 1 20 0 351 319 49 16 chr13 22276756 22276841 -97468057 - MIR SINE MIR -58 204 123 1730 161 3 42 chr13 22276841 22277152 -97467746 + AluSx SINE Alu 1 299 -13 351 319 49 16 chr13 22277152 22277251 -97467647 - MIR SINE MIR -139 123 14 195 318 111 32 chr13 22284301 22284518 -97460380 + L2 LINE L2 2862 3095 -177 352 215 26 23 chr13 22284604 22284719 -97460179 - L1MC/D LINE L1 -684 5470 5369 870 280 52 0 chr13 22284889 22285175 -97459723 + L1ME1 LINE L1 29 329 -6067 2899 211 49 40 chr13 22285211 22285497 -97459401 + L1ME1 LINE L1 4566 4848 -1387 2158 127 0 3 chr13 22285497 22285796 -97459102 + AluSx SINE Alu 1 298 -14 2899 211 49 40 chr13 22285796 22286772 -97458126 + L1ME1 LINE L1 4848 5836 -399 2385 161 33 0 chr13 22286790 22287188 -97457710 + MSTB LTR MaLR 16 426 0 867 226 134 24 chr13 22287188 22287516 -97457382 + L1ME1 LINE L1 5867 6230 -5 605 199 41 23 chr13 22287783 22287954 -97456944 + MLT1D LTR MaLR 134 307 -198 1821 179 22 44 chr13 22287954 22288362 -97456536 + MER57A LTR ERV1 1 399 -4 660 188 171 0 chr13 22288456 22288626 -97456272 + MLT1D LTR MaLR 304 502 -3 1011 200 44 5 chr13 22289583 22289788 -97455110 - MER20 DNA MER1_type 0 219 7 196 248 128 46 chr13 22290265 22290374 -97454524 - L3 LINE CR1 -193 1384 1267 204 40 0 0 chr13 22290725 22290750 -97454148 + (A)n Simple_repeat Simple_repeat 1 25 0 189 178 111 0 chr13 22291344 22291389 -97453509 - MIR SINE MIR -107 101 52 260 234 47 0 chr13 22291795 22291859 -97453039 - MIR SINE MIR 0 262 196 453 237 69 58 chr13 22291961 22292134 -97452764 + MER69A DNA AcHobo 3 177 0 547 237 39 77 chr13 22292168 22292375 -97452523 + MLT1J1 LTR MaLR 248 446 0 219 214 200 0 chr13 22292425 22292495 -97452403 - MIR SINE MIR -84 124 41 219 300 40 10 chr13 22292601 22292701 -97452197 + MIR SINE MIR 112 214 -48 310 352 93 42 chr13 22293820 22294546 -97450352 - L2 LINE L2 -2 3270 2519 2244 180 8 0 chr13 22294557 22294919 -97449979 - MLT1A1 LTR MaLR 0 365 1 2222 102 0 7 chr13 22295185 22295479 -97449419 - AluSc SINE Alu -17 292 1 767 316 128 9 chr13 22295787 22296242 -97448656 + L1MC1 LINE L1 5296 5804 -2004 2113 165 69 17 chr13 22296269 22296374 -97448524 + L1MB3 LINE L1 5725 5823 -360 2070 138 0 10 chr13 22296374 22296685 -97448213 + AluSx SINE Alu 1 308 -4 2113 165 69 17 chr13 22296685 22296985 -97447913 + L1MB3 LINE L1 5823 6151 -32 279 118 39 20 chr13 22297544 22297595 -97447303 + MER66A LTR ERV1 287 338 -140 405 0 0 0 chr13 22297595 22297640 -97447258 + (CA)n Simple_repeat Simple_repeat 2 46 0 231 368 157 8 chr13 22300183 22300425 -97444473 + L3b LINE CR1 1204 1481 -102 355 278 66 91 chr13 22302127 22302325 -97442573 + MIR SINE MIR 15 207 -55 462 245 25 80 chr13 22302330 22302493 -97442405 + L1MEd LINE L1 92 245 -5960 1395 195 44 13 chr13 22302827 22303048 -97441850 + L1MC1 LINE L1 6009 6222 -122 429 109 0 0 chr13 22303048 22303112 -97441786 + (TG)n Simple_repeat Simple_repeat 2 65 0 1395 195 44 13 chr13 22303112 22303171 -97441727 + L1MC1 LINE L1 6222 6278 -66 2816 66 3 21 chr13 22303171 22303548 -97441350 + L1PA13 LINE L1 5792 6161 -2 1395 195 44 13 chr13 22303548 22303608 -97441290 + L1MC1 LINE L1 6278 6344 0 380 127 28 0 chr13 22303647 22303718 -97441180 + MER53 DNA DNA 117 189 0 701 305 47 72 chr13 22303720 22303937 -97440961 + L1MEd LINE L1 546 767 -5438 734 194 8 8 chr13 22303937 22304061 -97440837 + FLAM_A SINE Alu 1 124 -9 701 305 47 72 chr13 22304061 22304413 -97440485 + L1MEd LINE L1 767 1101 -5104 305 263 144 54 chr13 22304501 22304960 -97439938 + L1MEd LINE L1 1311 1705 -871 22 94 0 0 chr13 22305099 22305163 -97439735 + AT_rich Low_complexity Low_complexity 1 64 0 494 281 56 6 chr13 22305319 22305479 -97439419 - MIR SINE MIR -21 241 74 396 231 69 43 chr13 22305490 22305727 -97439171 + L1ME3A LINE L1 3087 3333 -2882 2437 83 0 16 chr13 22305727 22306040 -97438858 + AluSg SINE Alu 1 308 -2 396 231 69 43 chr13 22306040 22306079 -97438819 + L1ME3A LINE L1 3333 3370 -2845 2307 72 0 75 chr13 22306258 22306591 -97438307 + AluY SINE Alu 1 308 -3 1023 275 95 32 chr13 22306843 22307094 -97437804 + L1ME3A LINE L1 5092 5326 -905 1930 119 19 0 chr13 22307094 22307362 -97437536 + AluSg SINE Alu 38 310 0 1023 275 95 32 chr13 22307362 22307893 -97437005 + L1ME3A LINE L1 5326 5919 -312 249 57 0 0 chr13 22308191 22308226 -97436672 + (TA)n Simple_repeat Simple_repeat 2 36 0 727 159 0 40 chr13 22308257 22308383 -97436515 - FLAM_A SINE Alu -12 121 1 24 53 0 0 chr13 22308439 22308477 -97436421 + AT_rich Low_complexity Low_complexity 1 38 0 477 50 0 0 chr13 22308768 22308828 -97436070 + (TCCA)n Simple_repeat Simple_repeat 1 60 0 1685 204 86 53 chr13 22309214 22309703 -97435195 - MLT1D LTR MaLR 0 505 1 2736 94 25 0 chr13 22309858 22310220 -97434678 + L1PA6 LINE L1 5784 6154 0 466 202 126 0 chr13 22310525 22310644 -97434254 + Charlie5 DNA MER1_type 2424 2557 -55 220 379 152 7 chr13 22310819 22311233 -97433665 + L2 LINE L2 2481 2954 -360 478 223 0 0 chr13 22311640 22311743 -97433155 + L1MA9 LINE L1 6173 6275 -37 1064 234 62 34 chr13 22312282 22312670 -97432228 + L1M4 LINE L1 4187 4585 -1561 * 14012 192 36 14 chr13 22312647 22317633 -97427265 - L1PA16 LINE L1 -9 6860 1750 2270 111 0 10 chr13 22317633 22317939 -97426959 - AluSp SINE Alu -10 303 1 14012 192 36 14 chr13 22317939 22318350 -97426548 - L1PA16 LINE L1 -5119 1750 1349 373 147 37 110 chr13 22319085 22319194 -97425704 + L1M3 LINE L1 5679 5779 -399 2427 67 0 0 chr13 22319201 22319501 -97425397 + AluY SINE Alu 1 300 -11 1476 204 71 12 chr13 22319713 22320051 -97424847 + MER47A DNA MER2_type 9 366 0 2108 147 46 11 chr13 22320058 22320405 -97424493 + MER46B DNA MER2_type 3 236 0 896 217 21 5 chr13 22320992 22321181 -97423717 + MER58A DNA MER1_type 30 221 -3 233 278 0 0 chr13 22322206 22322278 -97422620 + CT-rich Low_complexity Low_complexity 3 74 0 337 211 10 10 chr13 22322318 22322422 -97422476 + CT-rich Low_complexity Low_complexity 2 105 0 391 246 36 169 chr13 22322663 22322911 -97421987 + MIR SINE MIR 37 251 -11 21 0 0 0 chr13 22322940 22322961 -97421937 + AT_rich Low_complexity Low_complexity 1 21 0 1577 169 64 0 chr13 22323991 22324286 -97420612 + L1MB8 LINE L1 5653 5966 -212 735 184 19 25 chr13 22324287 22324445 -97420453 + L1MB8 LINE L1 6021 6177 -1 918 216 0 0 chr13 22324484 22324660 -97420238 - AluJb SINE Alu 0 312 137 23 0 0 0 chr13 22324733 22324756 -97420142 + AT_rich Low_complexity Low_complexity 1 23 0 2205 94 0 19 chr13 22325360 22325668 -97419230 - AluSc SINE Alu -7 302 1 332 273 182 0 chr13 22326119 22326251 -97418647 + L2 LINE L2 2712 2867 -447 25 0 0 0 chr13 22326596 22326621 -97418277 + AT_rich Low_complexity Low_complexity 1 25 0 2060 170 80 18 chr13 22326716 22327115 -97417783 + MSTB LTR MaLR 1 424 -2 3096 181 27 9 chr13 22327609 22328161 -97416737 + MER68 LTR ERV1 1 562 0 883 210 19 12 chr13 22328507 22328669 -97416229 + FAM SINE Alu 1 163 -12 22 0 0 0 chr13 22328671 22328693 -97416205 + AT_rich Low_complexity Low_complexity 1 22 0 441 169 45 11 chr13 22332302 22332391 -97412507 - MLT1J LTR MaLR 0 511 420 706 225 66 44 chr13 22332528 22332755 -97412143 - MLT1J LTR MaLR -267 244 13 23 54 0 0 chr13 22333209 22333246 -97411652 + AT_rich Low_complexity Low_complexity 1 37 0 2440 150 92 9 chr13 22333562 22334010 -97410888 + MER31A LTR ERV1 1 485 0 21 0 0 0 chr13 22334650 22334671 -97410227 + AT_rich Low_complexity Low_complexity 1 21 0 270 250 53 0 chr13 22336125 22336201 -97408697 - MLT1G LTR MaLR -13 577 498 474 270 101 30 chr13 22336316 22336583 -97408315 - MLT1G LTR MaLR -290 300 15 1826 159 14 3 chr13 22336755 22337051 -97407847 - AluSx SINE Alu -13 299 1 1573 223 58 62 chr13 22337268 22337330 -97407568 - Charlie1 DNA MER1_type 0 2761 2700 1899 161 3 3 chr13 22337330 22337640 -97407258 + AluSx SINE Alu 1 310 -2 1573 223 58 62 chr13 22337640 22338107 -97406791 - Charlie1 DNA MER1_type -61 2700 2234 213 316 68 34 chr13 22338666 22338783 -97406115 + MIR SINE MIR 81 201 -61 386 305 49 43 chr13 22339910 22340074 -97404824 + L2 LINE L2 3104 3268 -4 2095 116 10 0 chr13 22340558 22340860 -97404038 + AluSx SINE Alu 1 305 -7 637 67 56 0 chr13 22341242 22341331 -97403567 - AluY SINE Alu -7 304 211 201 39 0 0 chr13 22342141 22342167 -97402731 + (CA)n Simple_repeat Simple_repeat 2 27 0 400 111 0 0 chr13 22342197 22342251 -97402647 - MSTD LTR MaLR -342 54 1 367 187 157 30 chr13 22342324 22342451 -97402447 + L1ME LINE L1 849 995 -5075 1410 164 100 36 chr13 22342451 22342732 -97402166 + AluJo SINE Alu 1 299 -3 252 182 121 0 chr13 22342755 22342821 -97402077 + FAM SINE Alu 105 178 -1 695 216 51 47 chr13 22342821 22343076 -97401822 + L1ME LINE L1 2091 2346 -3734 * 5702 230 69 57 chr13 22343073 22343233 -97401665 + L1ME LINE L1 3033 3190 -2890 2023 140 3 10 chr13 22343233 22343547 -97401351 + AluSx SINE Alu 1 312 0 5702 230 69 57 chr13 22343547 22343772 -97401126 + L1ME LINE L1 3190 3411 -2669 1541 188 11 31 chr13 22343772 22344059 -97400839 - AluJo SINE Alu -29 283 3 5702 230 69 57 chr13 22344059 22344954 -97399944 + L1ME LINE L1 3411 4294 -1786 1807 118 0 4 chr13 22344954 22345208 -97399690 + L1PB1 LINE L1 5896 6148 -3 5702 230 69 57 chr13 22345208 22345458 -97399440 + L1ME LINE L1 4294 4539 -1541 2235 109 7 3 chr13 22345458 22345760 -97399138 + AluSq SINE Alu 1 303 -10 5702 230 69 57 chr13 22345760 22346383 -97398515 + L1ME LINE L1 4539 5219 -861 2371 71 7 0 chr13 22346383 22346677 -97398221 + AluY SINE Alu 1 296 -15 5702 230 69 57 chr13 22346677 22346773 -97398125 + L1ME LINE L1 5219 5312 -768 559 123 26 70 chr13 22346774 22346888 -97398010 - FLAM_C SINE Alu -6 137 29 269 262 37 47 chr13 22346889 22346996 -97397902 + L1ME LINE L1 5444 5549 -547 2087 125 17 0 chr13 22346996 22347291 -97397607 - AluSx SINE Alu -12 300 1 1863 165 0 16 chr13 22347339 22347648 -97397250 + AluJb SINE Alu 1 304 -8 875 300 93 39 chr13 22347710 22348203 -97396695 + LTR33 LTR ERVL 2 521 0 7794 49 6 10 chr13 22348339 22349517 -97395381 + SVA Other Other 326 1382 -4 1564 177 78 27 chr13 22349827 22350161 -97394737 - MSTD LTR MaLR -45 351 1 992 178 194 62 chr13 22350184 22350256 -97394642 + MER2 DNA MER2_type 1 62 -282 252 0 0 0 chr13 22350256 22350284 -97394614 + (TA)n Simple_repeat Simple_repeat 2 29 0 2107 77 7 39 chr13 22350286 22350572 -97394326 - AluY SINE Alu -34 277 1 992 178 194 62 chr13 22350572 22350800 -97394098 + MER2 DNA MER2_type 62 344 0 1681 185 0 17 chr13 22350837 22351134 -97393764 + AluJb SINE Alu 1 292 -20 944 302 47 15 chr13 22351200 22351601 -97393297 + L1MC/D LINE L1 5278 5691 -2117 4940 191 8 43 chr13 22351814 22351958 -97392940 - HSMAR1 DNA Mariner 0 1287 1140 2175 106 13 3 chr13 22351958 22352259 -97392639 - AluSp SINE Alu -1 312 9 4940 191 8 43 chr13 22352259 22352956 -97391942 - HSMAR1 DNA Mariner -147 1140 475 2196 120 0 0 chr13 22352968 22353259 -97391639 + AluSx SINE Alu 1 291 -21 3310 55 59 7 chr13 22353259 22353697 -97391201 + L1PA7 LINE L1 5686 6146 -8 2258 120 0 7 chr13 22353706 22354014 -97390884 + AluSg SINE Alu 1 306 -4 324 259 62 49 chr13 22354469 22354631 -97390267 + MER65-int LTR ERV1 98 261 -4610 309 229 91 48 chr13 22355377 22355587 -97389311 + L1MC5 LINE L1 7642 7860 -101 843 219 11 38 chr13 22355816 22355999 -97388899 - MER20 DNA MER1_type -4 215 38 2033 134 0 0 chr13 22357575 22357859 -97387039 - AluSx SINE Alu -28 284 1 180 277 0 0 chr13 22359024 22359071 -97385827 - L2 LINE L2 -1 3271 3225 448 257 13 40 chr13 22359533 22359685 -97385213 - MER104 DNA Tc2 0 180 33 1652 193 0 7 chr13 22359784 22360080 -97384818 + AluJo SINE Alu 1 294 -18 471 262 146 45 chr13 22360093 22360321 -97384577 - MIR SINE MIR -11 251 4 5057 157 32 60 chr13 22361694 22362793 -97382105 + MER11C LTR ERVK 3 1070 -1 6119 191 36 27 chr13 22363643 22365078 -97379820 - L1 LINE L1 -810 5336 3889 1447 157 19 83 chr13 22365078 22365390 -97379508 - AluSq SINE Alu -21 292 1 617 225 43 0 chr13 22365391 22365529 -97379369 - FRAM SINE Alu -5 171 28 273 206 68 14 chr13 22366194 22366212 -97378686 + L1MC4 LINE L1 6460 6476 -1566 3331 203 67 85 chr13 22366212 22367092 -97377806 + MER6 DNA MER2_type 1 864 -1 273 206 68 14 chr13 22367092 22367146 -97377752 + L1MC4 LINE L1 6476 6536 -1506 3461 175 50 5 chr13 22367146 22367804 -97377094 + Tigger2 DNA MER2_type 2 689 -2029 863 208 38 32 chr13 22367850 22368078 -97376820 + L1MC4 LINE L1 7016 7241 -801 524 113 62 0 chr13 22368078 22368158 -97376740 + L1PA16 LINE L1 6072 6156 -10 863 208 38 32 chr13 22368158 22368346 -97376552 + L1MC4 LINE L1 7241 7662 -380 2283 98 3 0 chr13 22368384 22368680 -97376218 + AluSq SINE Alu 1 297 -16 2477 51 10 0 chr13 22371165 22371457 -97373441 + AluY SINE Alu 1 295 -16 319 198 32 19 chr13 22371563 22371720 -97373178 + (TA)n Simple_repeat Simple_repeat 2 160 0 237 322 23 0 chr13 22371783 22371870 -97373028 - MIR3 SINE MIR -46 162 74 879 199 11 69 chr13 22372400 22372662 -97372236 + pTR5 LTR ERV1 782 1028 -1410 1712 117 0 146 chr13 22372749 22373144 -97371754 + pTR5 LTR ERV1 1352 2009 -429 323 290 0 0 chr13 22373144 22373244 -97371654 + LTR30 LTR ERV1 525 624 -98 834 120 8 0 chr13 22373244 22373361 -97371537 + LTR12 LTR ERV1 359 476 -238 261 254 0 60 chr13 22379375 22379509 -97365389 + (TTGGGG)n Simple_repeat Simple_repeat 1 126 0 285 62 0 42 chr13 22379811 22379859 -97365039 + Alu SINE Alu 257 302 0 189 0 0 0 chr13 22379910 22379931 -97364967 + (CA)n Simple_repeat Simple_repeat 2 22 0 1457 163 16 16 chr13 22379948 22380200 -97364698 - AluJo SINE Alu -24 288 37 915 231 62 30 chr13 22380344 22380734 -97364164 - MLT1A1 LTR MaLR -2 363 10 543 245 100 52 chr13 22381441 22381491 -97363407 + L1M4 LINE L1 3800 3846 -2300 2044 142 3 7 chr13 22381491 22381801 -97363097 + AluSx SINE Alu 1 309 -3 543 245 100 52 chr13 22381801 22382040 -97362858 + L1M4 LINE L1 3846 4103 -2043 556 189 0 0 chr13 22382040 22382135 -97362763 - AluJb SINE Alu -12 300 206 520 121 0 36 chr13 22382909 22382992 -97361906 + FRAM SINE Alu 70 149 -27 2010 130 48 0 chr13 22383515 22383808 -97361090 + AluSx SINE Alu 1 307 -5 3310 170 108 64 chr13 22383813 22385149 -97359749 - LTR19-int LTR ERV1 -2415 3531 478 2106 127 3 3 chr13 22387712 22388011 -97356887 + AluSc SINE Alu 1 299 -10 258 273 102 0 chr13 22388733 22388821 -97356077 + MIR SINE MIR 93 189 -73 1986 138 0 0 chr13 22389489 22389778 -97355120 - AluSg1 SINE Alu -20 289 1 22 0 0 0 chr13 22390835 22390857 -97354041 + AT_rich Low_complexity Low_complexity 1 22 0 2753 14 0 0 chr13 22391152 22391472 -97353426 + AluYa5 SINE Alu 1 320 0 188 200 20 0 chr13 22392990 22393040 -97351858 + (TA)n Simple_repeat Simple_repeat 1 51 0 184 224 158 0 chr13 22393286 22393362 -97351536 + MIR SINE MIR 175 262 0 2424 87 0 6 chr13 22395348 22395660 -97349238 + AluY SINE Alu 1 310 -1 1512 108 42 12 chr13 22395914 22396154 -97348744 + Tigger2 DNA MER2_type 2418 2664 -54 654 169 79 66 chr13 22396228 22396518 -97348380 + MLT1C LTR MaLR 106 390 0 253 323 0 0 chr13 22399668 22399733 -97345165 + polypyrimidine Low_complexity Low_complexity 2 66 0 6858 133 44 15 chr13 22399747 22399797 -97345101 - Tigger3b DNA MER2_type -1797 1231 1184 2252 102 0 23 chr13 22399797 22400100 -97344798 + AluSg SINE Alu 1 296 -14 6858 133 44 15 chr13 22400100 22401244 -97343654 - Tigger3b DNA MER2_type -1844 1184 2 381 255 35 80 chr13 22401246 22401709 -97343189 - L1MC5 LINE L1 -187 7774 7333 933 202 16 21 chr13 22401787 22401975 -97342923 + AluJo SINE Alu 119 305 -7 234 325 0 0 chr13 22402113 22402193 -97342705 - L1MC4 LINE L1 -773 7269 7190 308 299 62 10 chr13 22405511 22405608 -97339290 - MIR SINE MIR -114 148 47 181 249 45 141 chr13 22405596 22405773 -97339125 + MIR SINE MIR 53 212 -50 * 511 286 81 5 chr13 22406621 22406806 -97338092 + MIR SINE MIR 59 257 -5 243 0 0 0 chr13 22406807 22406834 -97338064 + (CAT)n Simple_repeat Simple_repeat 1 27 0 1683 114 82 7 chr13 22406915 22407221 -97337677 + MER46B DNA MER2_type 32 235 -1 191 255 0 20 chr13 22407287 22407338 -97337560 + L2 LINE L2 2685 2734 -580 800 110 31 16 chr13 22407626 22407753 -97337145 + AluSg/x SINE Alu 182 310 0 422 252 53 27 chr13 22407861 22408044 -97336854 + L1ME LINE L1 5473 5657 -464 509 247 84 6 chr13 22408132 22408298 -97336600 + MER97b DNA MER1_type? 1 179 -874 1018 219 73 0 chr13 22409090 22409337 -97335561 - L1MCa LINE L1 -6143 283 19 268 302 95 28 chr13 22409752 22410004 -97334894 + L2 LINE L2 2422 2690 -624 2400 73 7 7 chr13 22410538 22410840 -97334058 - AluSg SINE Alu -8 302 1 180 236 83 42 chr13 22410943 22411015 -97333883 - L2 LINE L2 0 3272 3198 25 0 0 0 chr13 22411299 22411324 -97333574 + AT_rich Low_complexity Low_complexity 1 25 0 320 125 18 0 chr13 22411337 22411393 -97333505 + LTR54 LTR ERV1 416 472 -38 462 254 8 16 chr13 22413218 22413340 -97331558 + L2 LINE L2 3193 3313 0 398 276 125 0 chr13 22414243 22414395 -97330503 - MIR SINE MIR 0 262 92 195 339 89 40 chr13 22414770 22414894 -97330004 - MIR3 SINE MIR -65 143 14 548 282 74 28 chr13 22414921 22415137 -97329761 + MIR SINE MIR 12 237 -25 1898 155 0 13 chr13 22415210 22415513 -97329385 + AluJb SINE Alu 1 299 -13 215 222 0 79 chr13 22415523 22415586 -97329312 + MIR SINE MIR 198 255 -7 21 0 0 0 chr13 22415704 22415725 -97329173 + AT_rich Low_complexity Low_complexity 1 21 0 317 172 62 0 chr13 22417659 22417723 -97327175 - MIR SINE MIR -72 190 123 2138 116 14 0 chr13 22418342 22418636 -97326262 + AluSx SINE Alu 6 303 -9 219 354 23 31 chr13 22419073 22419203 -97325695 - L2 LINE L2 -5 3308 3180 30 0 0 0 chr13 22420393 22420423 -97324475 + AT_rich Low_complexity Low_complexity 1 30 0 655 287 171 6 chr13 22420697 22421031 -97323867 + L3 LINE CR1 666 1054 -523 2422 123 40 38 chr13 22421233 22421656 -97323242 - MSTC LTR MaLR -4 424 1 1488 210 89 23 chr13 22421822 22422251 -97322647 + MSTB2 LTR MaLR 1 457 0 369 302 173 56 chr13 22422775 22423116 -97321782 + L3 LINE CR1 1079 1459 -118 645 244 141 53 chr13 22423303 22423794 -97321104 - L1ME2 LINE L1 -224 5938 5406 751 193 0 15 chr13 22423862 22423997 -97320901 - FLAM_A SINE Alu 0 133 1 283 91 0 0 chr13 22424216 22424260 -97320638 - AluJo SINE Alu -6 294 251 977 170 19 0 chr13 22424260 22424419 -97320479 - AluJo SINE Alu -150 162 1 1960 273 76 56 chr13 22424425 22425701 -97319197 - L1ME2 LINE L1 -1097 5049 3725 1753 130 4 0 chr13 22425701 22425954 -97318944 - AluSx SINE Alu -10 302 49 1960 273 76 56 chr13 22425954 22426470 -97318428 - L1ME2 LINE L1 -2421 3725 3221 1718 139 57 36 chr13 22426478 22426810 -97318088 + MER2 DNA MER2_type 7 345 0 337 280 115 37 chr13 22427043 22427610 -97317288 - L1ME2 LINE L1 -3214 2932 2322 208 191 48 0 chr13 22429728 22429770 -97315128 + MIR SINE MIR 217 260 -2 267 216 13 150 chr13 22429771 22429824 -97315074 + MER94 DNA DNA 1 60 -74 1603 196 4 0 chr13 22429824 22430105 -97314793 - AluJo SINE Alu -30 282 1 267 216 13 150 chr13 22430105 22430204 -97314694 + MER94 DNA DNA 60 132 -2 243 288 45 0 chr13 22430305 22430371 -97314527 - MIR SINE MIR -70 192 124 191 324 15 0 chr13 22430557 22430625 -97314273 + MER5A DNA MER1_type 7 75 -114 * 262 275 266 9 chr13 22430569 22430678 -97314220 - MER5A DNA MER1_type -4 185 49 660 83 0 0 chr13 22430678 22430762 -97314136 + AluSg/x SINE Alu 211 294 -16 1083 173 15 10 chr13 22431808 22432010 -97312888 - MER2 DNA MER2_type -135 210 8 269 220 110 9 chr13 22433232 22433341 -97311557 + MER103 DNA DNA 2 121 -45 2281 117 0 3 chr13 22433618 22433925 -97310973 - AluSx SINE Alu -6 306 1 21 0 0 0 chr13 22433932 22433953 -97310945 + AT_rich Low_complexity Low_complexity 1 21 0 266 262 36 12 chr13 22434000 22434084 -97310814 - MER46C DNA MER2_type -1 337 252 743 201 109 41 chr13 22434091 22434516 -97310382 - LTR54B LTR ERV1 -8 490 2 538 230 59 54 chr13 22434554 22434776 -97310122 - MER46C DNA MER2_type -113 225 3 2064 136 27 54 chr13 22434828 22435183 -97309715 + MER57A LTR ERV1 8 371 -32 258 32 0 0 chr13 22435183 22435214 -97309684 + (TTTA)n Simple_repeat Simple_repeat 2 32 0 1916 125 0 30 chr13 22435221 22435517 -97309381 - AluSx SINE Alu -25 287 1 2064 136 27 54 chr13 22435517 22435559 -97309339 + MER57A LTR ERV1 377 402 -1 22 0 0 0 chr13 22435735 22435757 -97309141 + AT_rich Low_complexity Low_complexity 1 22 0 641 203 165 21 chr13 22436056 22436293 -97308605 - MER31A LTR ERV1 0 485 215 195 42 0 0 chr13 22436418 22436442 -97308456 + (GTTTG)n Simple_repeat Simple_repeat 2 25 0 734 275 143 13 chr13 22436510 22436895 -97308003 + L1MCc LINE L1 26 460 -5963 963 289 61 42 chr13 22437067 22437656 -97307242 + L1MCc LINE L1 1477 2076 -4865 21 36 0 0 chr13 22438014 22438042 -97306856 + AT_rich Low_complexity Low_complexity 1 28 0 956 149 51 17 chr13 22438045 22438220 -97306678 + AluSx SINE Alu 3 183 -129 1123 149 44 6 chr13 22438320 22438501 -97306397 + AluSg/x SINE Alu 111 298 -14 484 241 71 71 chr13 22438713 22438942 -97305956 - MIR SINE MIR 0 262 25 2436 61 0 17 chr13 22439258 22439555 -97305343 + AluY SINE Alu 1 292 -19 453 169 0 0 chr13 22439984 22440055 -97304843 - MER2 DNA MER2_type 0 345 275 806 175 7 28 chr13 22440055 22440198 -97304700 + FRAM SINE Alu 1 140 -36 21 0 0 0 chr13 22440217 22440238 -97304660 + AT_rich Low_complexity Low_complexity 1 21 0 709 169 4 9 chr13 22440269 22440520 -97304378 - MER2 DNA MER2_type -61 284 1 543 189 0 19 chr13 22441008 22441114 -97303784 - L1MD2 LINE L1 -13 6346 6243 938 187 20 5 chr13 22441140 22441343 -97303555 - MER72 LTR ERV1 -516 206 1 299 285 138 79 chr13 22441414 22441783 -97303115 + L2 LINE L2 2882 3272 0 1017 215 94 97 chr13 22441785 22442533 -97302365 - LTR8A LTR ERV1 0 727 1 21 36 0 0 chr13 22443745 22443773 -97301125 + AT_rich Low_complexity Low_complexity 1 28 0 251 252 26 126 chr13 22444095 22444176 -97300722 - MIR SINE MIR -45 217 156 2334 96 3 0 chr13 22444176 22444468 -97300430 + AluSg SINE Alu 1 293 -17 251 252 26 126 chr13 22444468 22444537 -97300361 - MIR SINE MIR -106 156 82 2502 56 0 3 chr13 22445420 22445723 -97299175 + AluY SINE Alu 1 302 -9 21 36 0 0 chr13 22445743 22445771 -97299127 + AT_rich Low_complexity Low_complexity 1 28 0 441 0 0 0 chr13 22447053 22447102 -97297796 + (TAGA)n Simple_repeat Simple_repeat 2 50 0 2304 67 27 3 chr13 22447126 22447423 -97297475 - AluY SINE Alu -7 304 1 219 284 0 15 chr13 22448222 22448293 -97296605 - MIR SINE MIR -6 256 187 264 308 101 40 chr13 22448331 22448529 -97296369 - MIR SINE MIR -12 250 41 879 296 23 40 chr13 22448633 22448937 -97295961 - MLT1K LTR MaLR -2 586 288 488 278 106 39 chr13 22450075 22450406 -97294492 + L1ME4a LINE L1 4706 5058 -1088 2048 113 7 23 chr13 22450406 22450737 -97294161 - AluSx SINE Alu 0 312 1 2421 145 6 6 chr13 22450782 22451147 -97293751 - MER47A DNA MER2_type 0 366 2 1972 134 25 0 chr13 22451249 22451526 -97293372 - AluSx SINE Alu -28 284 1 1057 227 95 122 chr13 22451554 22452180 -97292718 + L1ME4a LINE L1 5334 5965 -205 399 284 0 0 chr13 22452900 22452995 -97291903 + MER103 DNA DNA 20 114 -52 2398 72 3 0 chr13 22454193 22454497 -97290401 + AluY SINE Alu 1 305 -6 2153 111 9 29 chr13 22454511 22454827 -97290071 + AluSx SINE Alu 3 312 0 2617 155 29 9 chr13 22454870 22455289 -97289609 - MSTA LTR MaLR 0 428 2 428 242 30 20 chr13 22455735 22455834 -97289064 - L2 LINE L2 -20 3293 3194 184 311 87 55 chr13 22456283 22456572 -97288326 - L2 LINE L2 -821 2493 2196 2017 138 7 0 chr13 22457379 22457683 -97287215 - AluSx SINE Alu -6 306 1 197 178 22 0 chr13 22457725 22457770 -97287128 + (TA)n Simple_repeat Simple_repeat 2 47 0 1256 206 4 24 chr13 22457827 22458075 -97286823 - AluJb SINE Alu -32 280 38 23 0 0 0 chr13 22459460 22459483 -97285415 + AT_rich Low_complexity Low_complexity 1 23 0 345 308 45 32 chr13 22459785 22459941 -97284957 + L2 LINE L2 2674 2831 -483 289 262 83 48 chr13 22460121 22460266 -97284632 + L2 LINE L2 3154 3303 -10 2000 246 135 20 chr13 22460280 22461012 -97283886 - L1ME3 LINE L1 -2 6160 5345 5409 247 113 38 chr13 22461054 22461162 -97283736 - L2 LINE L2 -808 2506 2408 1441 153 145 0 chr13 22461162 22461417 -97283481 + AluJo SINE Alu 1 292 -20 5409 247 113 38 chr13 22461417 22462969 -97281929 - L2 LINE L2 -906 2408 646 1836 206 100 30 chr13 22462969 22463440 -97281458 - MLT1D LTR MaLR -1 504 1 5409 247 113 38 chr13 22463440 22463923 -97280975 - L2 LINE L2 -2668 646 201 1355 142 15 0 chr13 22464712 22464909 -97279989 + AluJo SINE Alu 1 200 -112 853 298 83 24 chr13 22465147 22465520 -97279378 + MLT1I LTR MaLR 1 395 -14 274 237 75 11 chr13 22465681 22465774 -97279124 + L1ME4a LINE L1 6023 6121 0 460 160 21 11 chr13 22466253 22466347 -97278551 + MLT1A1 LTR MaLR 58 152 -213 287 25 25 0 chr13 22466374 22466414 -97278484 + (TC)n Simple_repeat Simple_repeat 1 41 0 983 175 49 24 chr13 22466414 22466636 -97278262 + MLT1A1 LTR MaLR 162 363 -2 1650 177 0 30 chr13 22467575 22467874 -97277024 - AluJb SINE Alu -13 299 10 43407 55 4 6 chr13 22468182 22474350 -97270548 - L1PA5 LINE L1 0 6154 1 281 255 75 50 chr13 22474531 22474692 -97270206 - L1M4 LINE L1 -1901 4245 4081 319 267 158 17 chr13 22474974 22475094 -97269804 + MIR SINE MIR 126 262 0 22 0 0 0 chr13 22475477 22475499 -97269399 + AT_rich Low_complexity Low_complexity 1 22 0 437 195 207 12 chr13 22476182 22476334 -97268564 - L1MD3 LINE L1 0 7995 7645 546 204 55 149 chr13 22476794 22477069 -97267829 + MER112 DNA MER1_type 1 249 -11 204 67 0 0 chr13 22478082 22478112 -97266786 + (TTTTTG)n Simple_repeat Simple_repeat 3 32 0 5142 182 70 24 chr13 22478419 22478666 -97266232 + L1MB7 LINE L1 3999 4233 -1951 423 0 0 0 chr13 22478666 22478713 -97266185 + (CA)n Simple_repeat Simple_repeat 2 48 0 5142 182 70 24 chr13 22478713 22478724 -97266174 + L1MB7 LINE L1 4233 4242 -1942 2241 121 0 13 chr13 22478724 22479038 -97265860 + AluSq SINE Alu 1 310 -3 5142 182 70 24 chr13 22479038 22480846 -97264052 + L1MB7 LINE L1 4242 6165 -19 539 138 0 0 chr13 22480854 22480941 -97263957 + L1MB8 LINE L1 6077 6163 -15 351 0 0 0 chr13 22482252 22482291 -97262607 + (TG)n Simple_repeat Simple_repeat 2 40 0 494 271 98 33 chr13 22483408 22483622 -97261276 - L2 LINE L2 -259 3054 2827 1659 156 35 38 chr13 22483689 22484059 -97260839 - MSTC LTR MaLR -2 426 18 1575 158 12 71 chr13 22485066 22485388 -97259510 - AluJb SINE Alu -9 303 1 567 236 102 77 chr13 22485665 22485978 -97258920 - MLT1J LTR MaLR -188 323 3 28 29 0 0 chr13 22486030 22486065 -97258833 + AT_rich Low_complexity Low_complexity 1 35 0 2442 78 0 7 chr13 22486070 22486366 -97258532 + AluSg SINE Alu 1 294 -16 1789 234 84 44 chr13 22486499 22487068 -97257830 - MLT1E LTR MaLR -1 592 1 195 69 0 0 chr13 22487223 22487252 -97257646 + (GA)n Simple_repeat Simple_repeat 1 29 0 1500 175 93 10 chr13 22488254 22488545 -97256353 - MER44D DNA MER2_type -5 604 20 829 212 0 50 chr13 22488587 22488766 -97256132 + MER8 DNA MER2_type 8 177 -62 384 187 121 22 chr13 22488768 22488859 -97256039 - Tigger2 DNA MER2_type -2618 100 1 1397 202 24 14 chr13 22488965 22489252 -97255646 + AluJo SINE Alu 1 290 -22 2161 131 0 6 chr13 22491665 22491978 -97252920 - AluSx SINE Alu -1 311 1 22 0 0 0 chr13 22492896 22492918 -97251980 + AT_rich Low_complexity Low_complexity 1 22 0 1538 206 99 0 chr13 22493079 22493434 -97251464 - MLT1B LTR MaLR 0 390 1 292 319 83 35 chr13 22494873 22495017 -97249881 - MIR3 SINE MIR -57 151 1 3083 109 78 52 chr13 22496394 22496909 -97247989 + MER1A DNA MER1_type 1 528 -1 2272 109 3 6 chr13 22497366 22497678 -97247220 + AluSq SINE Alu 1 311 -2 187 176 0 0 chr13 22498445 22498479 -97246419 - L2 LINE L2 0 3313 3280 457 303 0 16 chr13 22498485 22498607 -97246291 - L2 LINE L2 0 3313 3194 356 300 121 14 chr13 22498684 22498907 -97245991 - MIR SINE MIR -15 247 1 200 306 14 56 chr13 22500450 22500522 -97244376 + MIR SINE MIR 49 117 -145 2145 112 14 0 chr13 22500581 22500876 -97244022 - AluSx SINE Alu -13 299 1 4553 183 87 13 chr13 22502722 22503742 -97241156 + L1MC3 LINE L1 6690 7785 0 304 271 22 66 chr13 22503866 22504047 -97240851 - L2 LINE L2 -438 2876 2704 294 337 0 12 chr13 22504268 22504351 -97240547 - L3 LINE CR1 -109 1468 1387 631 209 32 73 chr13 22505329 22505549 -97239349 + L2 LINE L2 3103 3313 0 1041 150 0 24 chr13 22505611 22505778 -97239120 + AluSg/x SINE Alu 132 294 -16 2117 127 0 0 chr13 22505780 22506080 -97238818 + AluSg SINE Alu 1 300 -10 2303 110 0 7 chr13 22507157 22507467 -97237431 - AluSx SINE Alu -4 308 1 2421 145 6 6 chr13 22507512 22507877 -97237021 - MER47A DNA MER2_type 0 366 2 1972 134 25 0 chr13 22507979 22508256 -97236642 - AluSx SINE Alu -28 284 1 1057 227 95 122 chr13 22508284 22508910 -97235988 + L1ME3A LINE L1 5334 5965 -205 399 284 0 0 chr13 22509630 22509725 -97235173 + MER103 DNA DNA 20 114 -52 2398 72 3 0 chr13 22510923 22511227 -97233671 + AluY SINE Alu 1 305 -6 2153 111 9 29 chr13 22511241 22511557 -97233341 + AluSx SINE Alu 3 312 0 2617 155 29 9 chr13 22511600 22512019 -97232879 - MSTA LTR MaLR 0 428 2 428 242 30 20 chr13 22512465 22512564 -97232334 - L2 LINE L2 -20 3293 3194 184 311 87 55 chr13 22513013 22513302 -97231596 - L2 LINE L2 -821 2493 2196 2017 138 7 0 chr13 22514108 22514412 -97230486 - AluSx SINE Alu -6 306 1 197 178 22 0 chr13 22514454 22514499 -97230399 + (TA)n Simple_repeat Simple_repeat 2 47 0 1256 206 4 24 chr13 22514556 22514804 -97230094 - AluJb SINE Alu -32 280 38 23 0 0 0 chr13 22516189 22516212 -97228686 + AT_rich Low_complexity Low_complexity 1 23 0 345 308 45 32 chr13 22516514 22516670 -97228228 + L2 LINE L2 2674 2831 -483 289 262 83 48 chr13 22516850 22516995 -97227903 + L2 LINE L2 3154 3303 -10 2000 246 135 20 chr13 22517009 22517741 -97227157 - L1ME3 LINE L1 -2 6160 5345 3116 230 109 52 chr13 22517783 22517891 -97227007 - L2 LINE L2 -808 2506 2406 1441 153 145 0 chr13 22517891 22518146 -97226752 + AluJo SINE Alu 1 292 -20 3116 230 109 52 chr13 22518146 22519298 -97225600 - L2 LINE L2 -908 2406 1175 1063 224 8 4 chr13 22519961 22520206 -97224692 + AluSq SINE Alu 54 299 -14 1913 134 0 7 chr13 22520272 22520576 -97224322 - AluSx SINE Alu 0 302 1 246 289 46 30 chr13 22521585 22521747 -97223151 - MIR SINE MIR -10 252 36 674 159 0 66 chr13 22523232 22523383 -97221515 - L1MB4 LINE L1 -1 6179 6039 5151 111 9 5 chr13 22524385 22525123 -97219775 - L1PA13 LINE L1 0 6163 5423 242 232 29 0 chr13 22525713 22525782 -97219116 - LTR67 LTR ERVL -3 554 484 275 157 131 16 chr13 22526024 22526185 -97218713 - MER20 DNA MER1_type 0 219 1 217 250 94 122 chr13 22526248 22526428 -97218470 + L2 LINE L2 3096 3270 -2 648 260 68 17 chr13 22527262 22527439 -97217459 - MER5A DNA MER1_type -3 186 1 1717 175 7 13 chr13 22527465 22527768 -97217130 + AluJb SINE Alu 1 301 -11 22 0 0 0 chr13 22527773 22527795 -97217103 + AT_rich Low_complexity Low_complexity 1 22 0 1491 111 79 14 chr13 22527795 22528011 -97216887 + MER30 DNA MER1_type 1 230 0 386 273 284 10 chr13 22529245 22529439 -97215459 + MIR SINE MIR 2 248 -14 3413 119 35 16 chr13 22530851 22531398 -97213500 - LTR9B LTR ERV1 -87 557 1 1253 142 10 0 chr13 22531398 22531595 -97213303 - HUERS-P3 LTR ERV1 -1 8918 8720 457 102 0 0 chr13 22531593 22531652 -97213246 - HUERS-P3b LTR ERV1 -1274 6144 6086 * 1038 47 16 0 chr13 22531650 22531777 -97213121 - HUERS-P3b LTR ERV1 -2131 3086 2958 1128 124 75 0 chr13 22531819 22532005 -97212893 - LTR9B LTR ERV1 0 644 445 3367 208 72 45 chr13 22533288 22533932 -97210966 - L1ME2 LINE L1 -9 6155 5446 1925 140 3 38 chr13 22533932 22534246 -97210652 + AluJb SINE Alu 7 309 -3 3367 208 72 45 chr13 22534246 22534792 -97210106 - L1ME2 LINE L1 -718 5446 4916 278 255 255 13 chr13 22535127 22535280 -97209618 - MIR SINE MIR -14 248 59 2090 141 0 0 chr13 22537532 22537822 -97207076 - AluSx SINE Alu -22 290 1 739 125 0 0 chr13 22537882 22538005 -97206893 - AluSg/x SINE Alu 0 311 189 1736 83 5 0 chr13 22538006 22538224 -97206674 - AluSq SINE Alu -94 219 1 531 152 9 38 chr13 22538711 22538816 -97206082 + L1MB3 LINE L1 6075 6176 -7 476 324 143 5 chr13 22540429 22540639 -97204259 - L3 LINE CR1 -938 639 401 261 343 135 6 chr13 22541209 22541387 -97203511 + L2 LINE L2 2252 2452 -862 1982 183 127 44 chr13 22541712 22542192 -97202706 + MLT2B1 LTR ERVL 1 520 0 193 327 84 28 chr13 22543993 22544100 -97200798 - L2 LINE L2 -14 3258 3146 869 194 62 44 chr13 22544324 22544551 -97200347 + L1MC1 LINE L1 6078 6308 -25 1438 111 136 76 chr13 22544717 22544869 -97200029 + THE1C LTR MaLR 1 142 -233 1943 157 0 3 chr13 22544869 22545163 -97199735 + AluSx SINE Alu 1 293 -19 1438 111 136 76 chr13 22545163 22545326 -97199572 + THE1C LTR MaLR 142 335 -40 1950 78 67 11 chr13 22545326 22545615 -97199283 + AluY SINE Alu 1 304 0 232 211 0 35 chr13 22545615 22545672 -97199226 + THE1C LTR MaLR 374 428 0 363 191 143 38 chr13 22546107 22546212 -97198686 - L1MC1 LINE L1 -126 6207 6092 1186 220 59 54 chr13 22546304 22546695 -97198203 + MLT2C2 LTR ERVL 1 393 -71 917 177 29 34 chr13 22546695 22546870 -97198028 - FAM SINE Alu -11 174 1 243 343 56 9 chr13 22546885 22546993 -97197905 + L2 LINE L2 3117 3229 -43 823 256 81 42 chr13 22548254 22548613 -97196285 - L1ME LINE L1 -329 5792 5420 233 219 256 0 chr13 22548819 22548901 -97195997 + MIR SINE MIR 72 174 -88 440 231 71 106 chr13 22550301 22550882 -97194016 - HSREP522 Satellite telomeric 0 560 1 219 253 23 23 chr13 22551667 22551754 -97193144 + GA-rich Low_complexity Low_complexity 5 91 0 1626 224 26 5 chr13 22552571 22553000 -97191898 - L1 LINE L1 -810 5336 4899 252 0 0 0 chr13 22553727 22553755 -97191143 + (ATG)n Simple_repeat Simple_repeat 1 28 0 231 326 34 11 chr13 22554268 22554357 -97190541 + A-rich Low_complexity Low_complexity 4 94 0 210 484 11 11 chr13 22554625 22554716 -97190182 + A-rich Low_complexity Low_complexity 2 92 0 254 447 0 41 chr13 22554820 22554943 -97189955 + (TAAA)n Simple_repeat Simple_repeat 2 119 0 195 304 29 0 chr13 22555014 22555083 -97189815 + A-rich Low_complexity Low_complexity 2 72 0 21 36 0 0 chr13 22555086 22555114 -97189784 + AT_rich Low_complexity Low_complexity 1 28 0 219 157 98 20 chr13 22555152 22555203 -97189695 + (ATGTG)n Simple_repeat Simple_repeat 4 58 0 322 363 74 99 chr13 22555246 22555781 -97189117 + HAL1 LINE L1 881 1302 -1205 302 276 0 17 chr13 22555816 22555874 -97189024 + polypurine Low_complexity Low_complexity 20 76 0 304 311 19 19 chr13 22555951 22556057 -97188841 + L1M4 LINE L1 3076 3181 -2965 273 274 0 0 chr13 22556073 22556157 -97188741 + A-rich Low_complexity Low_complexity 1 84 0 191 263 26 0 chr13 22556301 22556339 -97188559 + (CAAA)n Simple_repeat Simple_repeat 2 40 0 251 154 0 19 chr13 22556342 22556394 -97188504 + G-rich Low_complexity Low_complexity 5 55 0 * 663 95 0 0 chr13 22556393 22556488 -97188410 + (A)n Simple_repeat Simple_repeat 1 95 0 420 55 0 0 chr13 22556488 22556543 -97188355 + (G)n Simple_repeat Simple_repeat 1 55 0 272 135 0 0 chr13 22556550 22556602 -97188296 + (A)n Simple_repeat Simple_repeat 1 52 0 358 284 0 11 chr13 22556614 22556702 -97188196 + GA-rich Low_complexity Low_complexity 2 88 0 * 978 48 0 0 chr13 22556701 22556777 -97188121 + (A)n Simple_repeat Simple_repeat 1 79 -47 504 0 0 0 chr13 22556777 22556833 -97188065 + (G)n Simple_repeat Simple_repeat 1 56 0 978 48 0 0 chr13 22556833 22556882 -97188016 + (A)n Simple_repeat Simple_repeat 78 126 0 380 308 44 0 chr13 22556882 22556914 -97187984 + L1MCa LINE L1 2226 2255 -4171 501 17 0 0 chr13 22556914 22556972 -97187926 + (G)n Simple_repeat Simple_repeat 1 58 0 380 308 44 0 chr13 22556972 22557047 -97187851 + L1MCa LINE L1 2255 2325 -4101 447 19 0 0 chr13 22557047 22557099 -97187799 + (G)n Simple_repeat Simple_repeat 1 52 0 380 308 44 0 chr13 22557099 22557155 -97187743 + L1MCa LINE L1 2325 3479 -2947 261 98 0 0 chr13 22557175 22557216 -97187682 + (G)n Simple_repeat Simple_repeat 1 41 0 786 11 0 0 chr13 22557216 22557307 -97187591 + (A)n Simple_repeat Simple_repeat 1 91 0 279 0 0 0 chr13 22557308 22557339 -97187559 + (C)n Simple_repeat Simple_repeat 1 31 0 31 196 0 0 chr13 22557804 22557896 -97187002 + GC_rich Low_complexity Low_complexity 1 92 0 216 194 75 0 chr13 22558366 22558433 -97186465 + A-rich Low_complexity Low_complexity 2 73 0 349 455 67 51 chr13 22558438 22558947 -97185951 + L1MDa LINE L1 1106 3796 -2744 518 148 0 0 chr13 22559092 22559180 -97185718 + (A)n Simple_repeat Simple_repeat 1 88 0 188 349 0 0 chr13 22559198 22559304 -97185594 + A-rich Low_complexity Low_complexity 1 106 0 208 434 12 36 chr13 22559380 22559463 -97185435 + (CGAA)n Simple_repeat Simple_repeat 3 83 0 237 211 0 0 chr13 22559464 22559516 -97185382 + G-rich Low_complexity Low_complexity 1 52 0 326 333 39 39 chr13 22559516 22559618 -97185280 + L1M4 LINE L1 3081 3182 -2964 300 212 0 0 chr13 22559619 22559685 -97185213 + G-rich Low_complexity Low_complexity 2 67 0 * 350 312 0 0 chr13 22559684 22559761 -97185137 + A-rich Low_complexity Low_complexity 1 77 0 * 550 89 25 0 chr13 22559748 22559827 -97185071 + (GA)n Simple_repeat Simple_repeat 2 82 0 398 351 94 6 chr13 22559830 22559902 -97184996 + L1M4 LINE L1 875 939 -3678 474 18 0 0 chr13 22559902 22559957 -97184941 + (G)n Simple_repeat Simple_repeat 1 55 0 398 351 94 6 chr13 22559957 22560037 -97184861 + L1M4 LINE L1 939 1011 -3606 534 16 0 0 chr13 22560037 22560100 -97184798 + (G)n Simple_repeat Simple_repeat 1 63 0 398 351 94 6 chr13 22560100 22560172 -97184726 + L1M4 LINE L1 1011 1075 -3542 498 33 0 0 chr13 22560172 22560232 -97184666 + (G)n Simple_repeat Simple_repeat 1 60 0 398 351 94 6 chr13 22560232 22560300 -97184598 + L1M4 LINE L1 1075 3305 -1312 381 43 0 0 chr13 22560300 22560347 -97184551 + (G)n Simple_repeat Simple_repeat 1 47 0 1759 148 20 3 chr13 22561107 22561411 -97183487 + AluSc SINE Alu 1 309 0 525 86 0 14 chr13 22561468 22561538 -97183360 - AluJ/FLAM SINE Alu -236 76 8 228 328 0 0 chr13 22561688 22561755 -97183143 - tRNA-Glu-GAG tRNA tRNA -3 72 6 666 0 0 0 chr13 22562224 22562297 -97182601 - tRNA-Lys-AAG tRNA tRNA -3 73 1 669 14 0 0 chr13 22562639 22562713 -97182185 - tRNA-Val-GTG tRNA tRNA -2 74 1 21 0 0 0 chr13 22563066 22563087 -97181811 + AT_rich Low_complexity Low_complexity 1 21 0 596 368 112 22 chr13 22563463 22563955 -97180943 + L2 LINE L2 1864 2399 -915 332 360 134 7 chr13 22564993 22565276 -97179622 + L2 LINE L2 2950 3268 -4 707 167 92 0 chr13 22565329 22565449 -97179449 + FLAM_C SINE Alu 2 132 -11 21 36 0 0 chr13 22565449 22565477 -97179421 + AT_rich Low_complexity Low_complexity 1 28 0 208 128 51 0 chr13 22565635 22565674 -97179224 + (TAAA)n Simple_repeat Simple_repeat 1 41 0 1724 152 3 20 chr13 22566587 22566883 -97178015 - AluSx SINE Alu -21 291 1 207 0 0 0 chr13 22566883 22566906 -97177992 + (T)n Simple_repeat Simple_repeat 1 23 0 1627 126 4 24 chr13 22567013 22567268 -97177630 - AluSq SINE Alu -9 304 55 24 32 0 0 chr13 22567645 22567676 -97177222 + AT_rich Low_complexity Low_complexity 1 31 0 22 0 0 0 chr13 22568690 22568712 -97176186 + AT_rich Low_complexity Low_complexity 1 22 0 1404 123 88 4 chr13 22568787 22569047 -97175851 - L1MA5 LINE L1 -2 6298 6017 528 220 171 23 chr13 22569124 22569388 -97175510 - L1MC5 LINE L1 -50 7911 7609 323 345 12 25 chr13 22569718 22569968 -97174930 + HERVL LTR ERVL 1516 1800 -3964 362 287 71 96 chr13 22570189 22570683 -97174215 + HERVL LTR ERVL 3851 4395 -1090 479 295 129 16 chr13 22571168 22571576 -97173322 + L2 LINE L2 2581 3044 -269 450 219 24 41 chr13 22572453 22572576 -97172322 + LTR67 LTR ERVL 429 549 -8 1788 164 88 8 chr13 22572775 22573128 -97171770 + MLT1C LTR MaLR 2 382 -85 1845 141 34 0 chr13 22576105 22576396 -97168502 + AluSx SINE Alu 1 301 -11 283 230 142 35 chr13 22576621 22576734 -97168164 + MIR3 SINE MIR 3 127 -81 208 212 71 71 chr13 22576832 22576931 -97167967 + MIR SINE MIR 18 116 -92 1996 116 7 13 chr13 22577495 22577798 -97167100 + AluSx SINE Alu 3 303 -9 505 208 10 10 chr13 22577830 22577931 -97166967 - MIR3 SINE MIR -39 169 69 1966 119 3 17 chr13 22578404 22578699 -97166199 - AluSg SINE Alu -19 291 1 333 136 40 160 chr13 22578762 22578887 -97166011 + MER34 LTR ERV1 433 542 0 1731 154 16 16 chr13 22579387 22579698 -97165200 + AluJb SINE Alu 1 311 -1 1449 182 37 14 chr13 22580404 22580701 -97164197 - AluJb SINE Alu -8 304 1 1547 228 47 17 chr13 22580960 22581363 -97163535 + MLT1C LTR MaLR 53 467 0 564 320 56 9 chr13 22581560 22581791 -97163107 - MIR SINE MIR 0 262 21 309 226 60 12 chr13 22581930 22582014 -97162884 - Charlie4 DNA MER1_type -33 1928 1841 1802 169 10 3 chr13 22583201 22583509 -97161389 - AluJo SINE Alu -2 310 1 696 148 9 0 chr13 22585005 22585113 -97159785 - AluJb SINE Alu -15 297 189 956 147 0 0 chr13 22585113 22585256 -97159642 - AluSq/x SINE Alu -169 143 1 1899 157 0 0 chr13 22585559 22585865 -97159033 - AluJb SINE Alu -4 308 3 2055 108 0 62 chr13 22586823 22587148 -97157750 + AluSx SINE Alu 1 305 -7 272 219 31 0 chr13 22587265 22587393 -97157505 + (TA)n Simple_repeat Simple_repeat 2 133 0 305 145 81 16 chr13 22587397 22587459 -97157439 + L1MCa LINE L1 1998 2063 -4363 653 203 0 17 chr13 22587506 22587624 -97157274 - FLAM_A SINE Alu -14 119 4 4563 153 38 27 chr13 22587628 22587924 -97156974 - L1MB3 LINE L1 -40 6143 5852 1781 130 3 25 chr13 22587924 22588233 -97156665 - AluSg SINE Alu 0 303 1 4563 153 38 27 chr13 22588233 22588695 -97156203 - L1MB3 LINE L1 -331 5852 5371 1844 79 0 20 chr13 22588695 22588947 -97155951 - AluSx SINE Alu -14 298 52 4563 153 38 27 chr13 22588947 22589032 -97155866 - L1MB3 LINE L1 -812 5371 5288 188 274 226 19 chr13 22589046 22589152 -97155746 - MIR SINE MIR -71 191 64 321 322 94 0 chr13 22589208 22589346 -97155552 + MIR SINE MIR 43 190 -67 1651 183 10 0 chr13 22589535 22589824 -97155074 - AluJo SINE Alu -15 297 6 308 331 16 39 chr13 22589972 22590099 -97154799 - MER5A DNA MER1_type 0 189 66 443 291 151 17 chr13 22590245 22590424 -97154474 - MIR SINE MIR -16 246 44 288 0 0 0 chr13 22591377 22591409 -97153489 + (TG)n Simple_repeat Simple_repeat 2 33 0 23 0 0 0 chr13 22592052 22592075 -97152823 + AT_rich Low_complexity Low_complexity 1 23 0 733 207 152 21 chr13 22592197 22592448 -97152450 + L1MB7 LINE L1 4906 5201 -945 1775 161 0 22 chr13 22592448 22592759 -97152139 + AluJb SINE Alu 1 304 -8 733 207 152 21 chr13 22592759 22592797 -97152101 + L1MB7 LINE L1 5201 5233 -913 2069 197 100 24 chr13 22592803 22593271 -97151627 + MLT2B2 LTR ERVL 9 512 -3 3906 203 31 13 chr13 22593271 22594153 -97150745 + L1MB7 LINE L1 5236 6132 -52 355 285 59 31 chr13 22594190 22594362 -97150536 + L1ME3 LINE L1 5995 6152 -10 184 307 72 42 chr13 22594416 22594582 -97150316 + L2 LINE L2 2745 2915 -399 437 312 145 0 chr13 22594604 22594790 -97150108 - MIR SINE MIR -30 232 20 23 0 0 0 chr13 22596458 22596481 -97148417 + AT_rich Low_complexity Low_complexity 1 23 0 2309 78 0 7 chr13 22596880 22597186 -97147712 + AluY SINE Alu 1 304 -7 997 143 6 24 chr13 22597218 22597386 -97147512 + AluSc SINE Alu 127 291 -18 1808 166 10 0 chr13 22597425 22597720 -97147178 + AluSx SINE Alu 1 298 -14 21 57 0 0 chr13 22597988 22598023 -97146875 + AT_rich Low_complexity Low_complexity 1 35 0 3063 192 23 158 chr13 22598978 22600267 -97144631 + MER52A LTR ERV1 641 1755 0 231 253 168 32 chr13 22600373 22600468 -97144430 + L2 LINE L2 3201 3308 -5 2274 114 0 13 chr13 22603182 22603488 -97141410 + AluSx SINE Alu 1 302 -10 258 316 53 18 chr13 22603945 22604116 -97140782 - MIR SINE MIR -7 255 79 356 294 28 0 chr13 22605304 22605413 -97139485 + MER81 DNA DNA 3 114 0 221 56 0 28 chr13 22606315 22606351 -97138547 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 1311 118 68 27 chr13 22606467 22606688 -97138210 + MER30 DNA MER1_type 1 230 0 609 266 234 13 chr13 22607285 22607679 -97137219 + LTR33A LTR ERVL 5 485 -38 378 165 106 0 chr13 22607880 22607965 -97136933 - MER20 DNA MER1_type -31 188 95 550 239 9 0 chr13 22608062 22608171 -97136727 - FLAM_A SINE Alu -21 121 12 1984 163 3 6 chr13 22608213 22608526 -97136372 - AluSx SINE Alu 0 312 1 2183 133 0 0 chr13 22611729 22612031 -97132867 + AluSg SINE Alu 1 302 -8 859 137 6 99 chr13 22612980 22613162 -97131736 - FRAM SINE Alu -1 165 1 182 309 56 40 chr13 22613208 22613334 -97131564 - L2 LINE L2 0 3272 3145 7317 163 28 27 chr13 22613757 22615794 -97129104 + L1MA8 LINE L1 3868 5923 -368 565 165 18 9 chr13 22616558 22616667 -97128231 + MER119 DNA MER1_type 474 583 0 347 244 142 16 chr13 22617357 22617484 -97127414 - MIR SINE MIR -107 155 13 1319 185 23 15 chr13 22617643 22617898 -97127000 + L1MB3 LINE L1 5428 5685 -494 7730 152 25 3 chr13 22617898 22618387 -97126511 - L1PA11 LINE L1 -3 6171 5694 2319 108 7 0 chr13 22618387 22618684 -97126214 - AluSq SINE Alu -14 299 1 7730 152 25 3 chr13 22618684 22620355 -97124543 - L1MB3 LINE L1 -480 5694 3989 2669 182 2 17 chr13 22620363 22620880 -97124018 + L1MB3 LINE L1 5675 6183 0 193 322 91 58 chr13 22621005 22621126 -97123772 + MIR SINE MIR 118 242 -20 257 342 53 0 chr13 22621325 22621439 -97123459 + L2 LINE L2 3185 3304 -9 1538 79 19 0 chr13 22622114 22622329 -97122569 + L1PA11 LINE L1 5956 6174 0 219 139 0 0 chr13 22622750 22622786 -97122112 + (A)n Simple_repeat Simple_repeat 1 36 0 236 94 0 0 chr13 22623178 22623254 -97121644 - Alu SINE Alu 0 323 248 2238 157 107 25 chr13 22623254 22623554 -97121344 + L1MC2 LINE L1 5820 6177 -167 2217 122 0 0 chr13 22623554 22623841 -97121057 + AluSc SINE Alu 1 287 -22 2238 157 107 25 chr13 22623841 22624025 -97120873 + L1MC2 LINE L1 6177 6344 0 324 0 0 0 chr13 22624225 22624261 -97120637 + (TG)n Simple_repeat Simple_repeat 1 36 0 249 286 71 52 chr13 22625021 22625231 -97119667 + MIR SINE MIR 46 259 -3 255 289 72 0 chr13 22625285 22625368 -97119530 - MIR SINE MIR -167 95 7 366 323 161 53 chr13 22625485 22626105 -97118793 + L3 LINE CR1 888 1574 -3 1131 140 0 0 chr13 22626107 22626264 -97118634 + AluJb SINE Alu 4 160 -152 402 142 0 0 chr13 22626267 22626343 -97118555 + Alu SINE Alu 241 299 -3 2212 90 4 0 chr13 22627000 22627300 -97117598 + AluSg SINE Alu 1 301 0 953 221 143 52 chr13 22627529 22627950 -97116948 + LTR37B LTR ERV1 10 468 0 1527 160 0 16 chr13 22628542 22628792 -97116106 - AluJb SINE Alu -16 296 51 30 45 0 0 chr13 22629318 22629362 -97115536 + AT_rich Low_complexity Low_complexity 1 44 0 3454 160 39 20 chr13 22629686 22630350 -97114548 + L1MB7 LINE L1 5495 6171 -13 1846 129 126 55 chr13 22633022 22633430 -97111468 + MER61C LTR ERV1 7 434 0 2603 58 0 3 chr13 22633485 22633793 -97111105 + AluY SINE Alu 1 307 -4 1238 134 5 5 chr13 22633820 22634014 -97110884 - Tigger1 DNA MER2_type 0 2418 2225 734 183 7 22 chr13 22634016 22634153 -97110745 + AluJo SINE Alu 2 136 -176 4772 130 36 0 chr13 22634169 22634909 -97109989 - Tigger1 DNA MER2_type -182 2236 1470 29 0 0 0 chr13 22635315 22635344 -97109554 + AT_rich Low_complexity Low_complexity 1 29 0 640 227 0 7 chr13 22635345 22635486 -97109412 - FLAM_C SINE Alu -2 141 2 2274 108 3 0 chr13 22637574 22637870 -97107028 + AluSg SINE Alu 1 297 -13 1614 225 36 0 chr13 22638209 22638542 -97106356 - MER7A DNA MER2_type -1 345 3 343 282 85 54 chr13 22638721 22638980 -97105918 - L1M4 LINE L1 -2985 3161 2895 21 36 0 0 chr13 22639293 22639321 -97105577 + AT_rich Low_complexity Low_complexity 1 28 0 1690 208 73 32 chr13 22639446 22639517 -97105381 + L1ME3A LINE L1 5391 5458 -712 2456 190 48 18 chr13 22639517 22640022 -97104876 + MLT2B1 LTR ERVL 1 520 0 1690 208 73 32 chr13 22640022 22640154 -97104744 + L1ME3A LINE L1 5458 5583 -587 1496 206 94 133 chr13 22640154 22640911 -97103987 + LTR8A LTR ERV1 1 727 0 1690 208 73 32 chr13 22640911 22641239 -97103659 + L1ME3A LINE L1 5583 5945 -225 1073 180 46 14 chr13 22641239 22641456 -97103442 + AluJo SINE Alu 81 304 -8 610 241 116 15 chr13 22641456 22641655 -97103243 + L1ME3A LINE L1 5952 6170 0 371 254 84 14 chr13 22641755 22641897 -97103001 - MIR SINE MIR -32 230 79 1323 157 17 8 chr13 22642773 22643009 -97101889 - L1MA6 LINE L1 -231 6069 5832 1260 106 55 0 chr13 22643009 22643204 -97101694 + L1MA6 LINE L1 6091 6300 0 2267 117 0 0 chr13 22643213 22643522 -97101376 + AluSc SINE Alu 1 309 0 455 301 11 22 chr13 22644886 22645069 -97099829 + MER5A DNA MER1_type 3 183 -6 231 242 32 0 chr13 22647566 22647628 -97097270 + LTR67 LTR ERVL 4 67 -490 728 249 47 9 chr13 22648979 22649192 -97095706 + MER58A DNA MER1_type 1 221 -3 2461 65 0 7 chr13 22649531 22649825 -97095073 + AluY SINE Alu 1 292 -19 2142 113 0 7 chr13 22650036 22650341 -97094557 + AluSg SINE Alu 1 303 0 475 0 0 71 chr13 22650373 22650443 -97094455 - L1PA6 LINE L1 0 6154 6090 1295 152 110 132 chr13 22650567 22651029 -97093869 - L1MB2 LINE L1 -239 5932 5481 2120 118 0 0 chr13 22651072 22651354 -97093544 - AluSx SINE Alu -32 280 1 329 240 88 104 chr13 22652537 22652729 -97092169 + MER5A DNA MER1_type 1 189 0 972 109 0 8 chr13 22653016 22653144 -97091754 + FLAM_C SINE Alu 1 127 -16 341 280 171 21 chr13 22654118 22654311 -97090587 - MIR SINE MIR -25 237 16 557 60 0 12 chr13 22655930 22656013 -97088885 + (GA)n Simple_repeat Simple_repeat 2 83 0 243 228 120 0 chr13 22656748 22656840 -97088058 + L1ME4a LINE L1 6006 6108 -13 1514 195 14 34 chr13 22656984 22657119 -97087779 + AluJo SINE Alu 1 137 -175 1884 147 0 63 chr13 22657119 22657438 -97087460 + AluJo SINE Alu 3 301 -11 1514 195 14 34 chr13 22657438 22657594 -97087304 + AluJo SINE Alu 137 286 -26 411 56 0 0 chr13 22657594 22657648 -97087250 + (CATA)n Simple_repeat Simple_repeat 2 55 0 321 360 85 0 chr13 22657695 22657906 -97086992 + MIR SINE MIR 26 254 -8 2429 91 0 0 chr13 22658271 22658567 -97086331 - AluSx SINE Alu -16 296 1 260 319 42 7 chr13 22658789 22658933 -97085965 - MER103 DNA DNA -12 154 6 607 213 124 6 chr13 22658991 22659146 -97085752 + MER5A DNA MER1_type 4 183 -6 882 209 0 16 chr13 22660079 22660261 -97084637 + AluJb SINE Alu 130 308 -4 1817 166 3 0 chr13 22660467 22660756 -97084142 + AluJo SINE Alu 7 296 -16 560 68 0 0 chr13 22661913 22661987 -97082911 + (GGAA)n Simple_repeat Simple_repeat 3 76 0 226 198 185 25 chr13 22662089 22662170 -97082728 + MIR SINE MIR 83 176 -86 865 159 8 0 chr13 22662279 22662411 -97082487 + FLAM_C SINE Alu 1 133 0 517 275 8 8 chr13 22662437 22662568 -97082330 - MIR SINE MIR -14 248 118 318 254 0 0 chr13 22663107 22663174 -97081724 + L2 LINE L2 3201 3267 -5 382 278 26 17 chr13 22663181 22663296 -97081602 - MIR SINE MIR -69 139 24 2697 49 0 0 chr13 22663388 22663694 -97081204 - AluY SINE Alu -5 306 1 23 33 0 0 chr13 22664172 22664202 -97080696 + AT_rich Low_complexity Low_complexity 1 30 0 792 178 79 35 chr13 22664220 22664422 -97080476 - L1MB2 LINE L1 -36 6135 5925 233 95 0 24 chr13 22664522 22664564 -97080334 + (TCCC)n Simple_repeat Simple_repeat 1 41 0 470 255 226 41 chr13 22664567 22665195 -97079703 - L2 LINE L2 -50 3263 2479 * 519 263 11 68 chr13 22665179 22665369 -97079529 - MIR3 SINE MIR -11 197 19 1033 183 6 0 chr13 22665546 22665721 -97079177 - FRAM SINE Alu -2 174 1 228 398 17 0 chr13 22668350 22668468 -97076430 - MIR SINE MIR -123 139 20 226 94 0 0 chr13 22668905 22668937 -97075961 + U2 snRNA snRNA 1 32 -156 1867 130 0 11 chr13 22669958 22670228 -97074670 + AluSx SINE Alu 35 301 -11 259 316 140 35 chr13 22670374 22670545 -97074353 - MIR SINE MIR -65 197 9 198 128 0 0 chr13 22671038 22671077 -97073821 + (TCCC)n Simple_repeat Simple_repeat 4 42 0 1019 124 7 0 chr13 22671088 22671225 -97073673 - AluSq SINE Alu -39 274 137 2370 97 3 0 chr13 22671225 22671523 -97073375 - AluSq SINE Alu -12 301 3 1768 185 0 7 chr13 22672715 22673007 -97071891 - AluJo SINE Alu -22 290 1 484 240 281 20 chr13 22673655 22673851 -97071047 - MIR SINE MIR -15 247 1 605 251 161 5 chr13 22675034 22675233 -97069665 - MIR SINE MIR 0 262 33 2947 16 0 0 chr13 22677282 22677600 -97067298 - AluYb8 SINE Alu 0 318 1 2349 104 7 0 chr13 22678260 22678567 -97066331 + AluSx SINE Alu 1 309 -3 296 251 277 26 chr13 22680718 22680873 -97064025 + MIR SINE MIR 6 121 -141 2017 161 0 3 chr13 22680873 22681171 -97063727 + AluJb SINE Alu 1 297 -15 296 251 277 26 chr13 22681171 22681210 -97063688 + MIR SINE MIR 121 249 -13 282 29 0 0 chr13 22681210 22681245 -97063653 + (TC)n Simple_repeat Simple_repeat 2 36 0 1237 178 26 42 chr13 22681263 22681527 -97063371 - MIR SINE MIR -1 261 2 248 372 0 12 chr13 22681722 22681808 -97063090 - MIR3 SINE MIR -11 197 113 243 21 0 64 chr13 22682551 22682598 -97062300 + (TTG)n Simple_repeat Simple_repeat 2 45 0 1584 178 8 4 chr13 22682602 22682866 -97062032 - AluJo SINE Alu -30 282 18 508 206 163 14 chr13 22683480 22683621 -97061277 - MIR SINE MIR -9 253 92 333 307 161 21 chr13 22684361 22684641 -97060257 - L3 LINE CR1 -19 1558 1240 228 211 18 0 chr13 22685706 22685763 -97059135 - MER94 DNA DNA -75 59 2 366 228 11 33 chr13 22686529 22686621 -97058277 - MER5B DNA MER1_type 0 178 89 192 271 21 0 chr13 22686653 22686701 -97058197 + L3 LINE CR1 862 910 -667 722 259 51 22 chr13 22687406 22687632 -97057266 - MIR SINE MIR -39 223 1 218 345 52 17 chr13 22687674 22687790 -97057108 + MIR SINE MIR 120 239 -23 1337 131 10 5 chr13 22687835 22688034 -97056864 + AluJb SINE Alu 113 312 0 2228 118 7 0 chr13 22689168 22689473 -97055425 + AluSx SINE Alu 1 307 -5 1935 173 42 75 chr13 22690084 22690512 -97054386 + MLT2D LTR ERVL 1 414 0 7490 37 6 0 chr13 22692123 22693585 -97051313 + L1PA4 LINE L1 4688 6152 -3 5992 178 40 3 chr13 22693672 22695132 -97049766 - ERVL LTR ERVL -66 5698 4130 2143 73 42 35 chr13 22695269 22695556 -97049342 + AluY SINE Alu 1 289 -22 1980 112 4 0 chr13 22695556 22695821 -97049077 + AluSg1 SINE Alu 27 294 -15 225 0 0 0 chr13 22696411 22696436 -97048462 + (TA)n Simple_repeat Simple_repeat 1 25 0 795 22 0 0 chr13 22696436 22696527 -97048371 - L1PA5 LINE L1 -16 6138 6048 2442 51 0 29 chr13 22700365 22700678 -97044220 - AluY SINE Alu -7 304 1 410 334 64 15 chr13 22700822 22701063 -97043835 - L1M4c LINE L1 -4383 2000 1422 555 223 23 0 chr13 22701063 22701193 -97043705 - L1MA10 LINE L1 -1 6333 6201 2181 107 0 0 chr13 22701193 22701474 -97043424 + AluSg SINE Alu 1 281 -29 7016 226 76 15 chr13 22701527 22704464 -97040434 - L1ME1 LINE L1 -151 6015 2894 991 140 18 12 chr13 22704465 22704629 -97040269 + THE1C LTR MaLR 1 165 -210 383 202 50 20 chr13 22705553 22705652 -97039246 + MLT1C-int LTR MaLR 1269 1370 -1 1203 199 205 13 chr13 22705653 22706039 -97038859 + MLT1C LTR MaLR 1 460 -7 1129 115 0 12 chr13 22706121 22706286 -97038612 + L1PA8 LINE L1 6001 6163 -9 812 168 0 0 chr13 22707669 22707800 -97037098 + FLAM_C SINE Alu 3 133 0 1978 167 0 0 chr13 22707833 22708139 -97036759 + AluJb SINE Alu 1 306 -6 331 346 82 0 chr13 22708524 22708706 -97036192 + MIR SINE MIR 14 210 -52 1855 171 0 7 chr13 22708962 22709261 -97035637 - AluJb SINE Alu -15 297 1 780 253 127 0 chr13 22709261 22709498 -97035400 + MER58B DNA MER1_type 75 341 0 218 56 28 0 chr13 22710637 22710673 -97034225 + (TCCCC)n Simple_repeat Simple_repeat 3 39 0 386 239 57 18 chr13 22710753 22710962 -97033936 - Charlie7 DNA MER1_type 0 2612 2317 21 0 0 0 chr13 22710969 22710990 -97033908 + AT_rich Low_complexity Low_complexity 1 21 0 270 0 0 0 chr13 22711233 22711263 -97033635 + (CA)n Simple_repeat Simple_repeat 2 31 0 228 125 0 0 chr13 22711497 22711529 -97033369 - Charlie7 DNA MER1_type -1479 1133 1102 184 244 78 44 chr13 22712077 22712167 -97032731 + L2 LINE L2 3164 3256 -16 218 260 10 62 chr13 22712169 22712265 -97032633 + (TGGG)n Simple_repeat Simple_repeat 2 92 0 2880 162 53 18 chr13 22712932 22713494 -97031404 + L1MB3 LINE L1 5601 6182 -1 21 0 0 0 chr13 22713494 22713515 -97031383 + AT_rich Low_complexity Low_complexity 1 21 0 1483 158 11 67 chr13 22713668 22713818 -97031080 - AluJb SINE Alu -24 288 131 192 40 0 0 chr13 22713818 22713843 -97031055 + (TTTTG)n Simple_repeat Simple_repeat 2 26 0 1889 114 42 0 chr13 22713844 22714108 -97030790 - AluSq SINE Alu -30 283 9 1483 158 11 67 chr13 22714108 22714239 -97030659 - AluJb SINE Alu -180 132 21 333 250 11 11 chr13 22715165 22715257 -97029641 - Tigger1 DNA MER2_type -857 1561 1470 413 137 52 0 chr13 22715257 22715410 -97029488 + (TATAA)n Simple_repeat Simple_repeat 4 164 0 353 175 44 17 chr13 22715415 22715700 -97029198 + (TTATA)n Simple_repeat Simple_repeat 1 292 0 31 0 0 0 chr13 22715700 22715731 -97029167 + AT_rich Low_complexity Low_complexity 1 31 0 336 80 68 51 chr13 22715731 22715907 -97028991 + (TTATA)n Simple_repeat Simple_repeat 1 179 0 * 582 85 73 0 chr13 22715903 22716067 -97028831 + (TA)n Simple_repeat Simple_repeat 1 176 0 298 148 49 16 chr13 22716085 22716207 -97028691 + (TA)n Simple_repeat Simple_repeat 1 126 0 2201 84 0 11 chr13 22716215 22716499 -97028399 - AluY SINE Alu -30 281 1 8998 123 42 20 chr13 22716499 22717331 -97027567 - Tigger1 DNA MER2_type -939 1479 601 2076 115 34 3 chr13 22717331 22717627 -97027271 - AluSx SINE Alu -7 305 1 8998 123 42 20 chr13 22717627 22718231 -97026667 - Tigger1 DNA MER2_type -1817 601 12 1907 173 42 75 chr13 22719513 22719941 -97024957 + MLT2D LTR ERVL 1 414 0 219 299 120 8 chr13 22721654 22721771 -97023127 + MIR SINE MIR 81 210 -52 1766 79 9 0 chr13 22721962 22722190 -97022708 + MER30 DNA MER1_type 1 230 0 2203 168 23 44 chr13 22722970 22723405 -97021493 + MSTB LTR MaLR 1 426 0 1365 88 0 6 chr13 22723683 22723854 -97021044 - AluSx SINE Alu -142 170 1 5039 126 23 88 chr13 22723854 22724870 -97020028 + Tigger3b DNA MER2_type 282 1231 0 4046 208 45 13 chr13 22724879 22726030 -97018868 + L1MB8 LINE L1 4316 5505 -675 1111 176 24 0 chr13 22726030 22726240 -97018658 + L1MB2 LINE L1 5950 6164 -7 3451 161 24 15 chr13 22726270 22726929 -97017969 + L1MB8 LINE L1 5514 6178 0 265 108 0 0 chr13 22727183 22727220 -97017678 - U2 snRNA snRNA -151 37 1 1726 185 18 0 chr13 22727536 22727822 -97017076 + AluJo SINE Alu 1 291 -21 1002 171 37 180 chr13 22727822 22727951 -97016947 + MLT1A2 LTR MaLR 34 89 -285 1461 133 41 5 chr13 22727951 22728169 -97016729 + AluJo SINE Alu 14 239 -73 1002 171 37 180 chr13 22728169 22728366 -97016532 + MLT1A2 LTR MaLR 89 313 -61 1704 140 92 4 chr13 22728625 22728897 -97016001 + AluSx SINE Alu 1 296 -16 267 301 21 11 chr13 22729899 22729992 -97014906 + L2 LINE L2 3179 3272 0 211 64 21 43 chr13 22730417 22730464 -97014434 + (CAAAAA)n Simple_repeat Simple_repeat 3 48 0 4510 255 129 32 chr13 22730513 22730811 -97014087 + L1MD1 LINE L1 2618 2886 -3260 2278 118 0 6 chr13 22730811 22731124 -97013774 + AluSx SINE Alu 1 311 -1 4510 255 129 32 chr13 22731124 22732284 -97012614 + L1MD1 LINE L1 2886 3932 -2214 342 0 0 0 chr13 22732284 22732322 -97012576 + (CA)n Simple_repeat Simple_repeat 1 38 0 4510 255 129 32 chr13 22732322 22732390 -97012508 + L1MD1 LINE L1 3932 3992 -2154 1463 113 0 10 chr13 22732390 22732594 -97012304 + AluSc SINE Alu 83 284 -25 4510 255 129 32 chr13 22732594 22733433 -97011465 + L1MD1 LINE L1 3992 5261 -885 1059 187 93 45 chr13 22733430 22733719 -97011179 + L1MD1 LINE L1 5855 6157 -85 * 186 143 0 0 chr13 22736697 22736732 -97008166 + (GAAAA)n Simple_repeat Simple_repeat 2 36 0 28 71 0 0 chr13 22736795 22736851 -97008047 + AT_rich Low_complexity Low_complexity 1 56 0 200 111 28 0 chr13 22737816 22737852 -97007046 + (TGAA)n Simple_repeat Simple_repeat 1 37 0 483 288 113 0 chr13 22738548 22738708 -97006190 + MER5B DNA MER1_type 1 178 0 817 207 0 0 chr13 22738720 22738870 -97006028 + MLT1A1 LTR MaLR 1 150 -215 618 238 33 0 chr13 22738950 22739101 -97005797 - MER5A DNA MER1_type 0 189 34 210 310 93 81 chr13 22739175 22739498 -97005400 + L2 LINE L2 2896 3222 -50 447 269 39 19 chr13 22741100 22741256 -97003642 - MER105 DNA DNA -21 183 25 226 280 80 0 chr13 22741926 22742001 -97002897 + MIR SINE MIR 62 142 -66 1814 148 7 30 chr13 22742273 22742570 -97002328 - AluJo SINE Alu -22 290 1 537 229 7 33 chr13 22742904 22743057 -97001841 + MIR SINE MIR 104 252 -10 2199 106 7 7 chr13 22745142 22745445 -96999453 + AluSx SINE Alu 1 303 -9 1209 219 33 17 chr13 22745967 22746269 -96998629 + L1MC2 LINE L1 6029 6335 -9 304 217 85 31 chr13 22746274 22746403 -96998495 + L1ME4a LINE L1 5984 6119 -2 200 308 64 41 chr13 22746832 22747004 -96997894 + MIR SINE MIR 81 256 -6 188 339 54 32 chr13 22747107 22747293 -96997605 + MIR3 SINE MIR 3 192 -16 509 326 32 5 chr13 22747670 22747857 -96997041 - MIR SINE MIR -25 237 46 2544 41 3 25 chr13 22748089 22748404 -96996494 + AluY SINE Alu 1 308 -3 306 275 11 11 chr13 22748918 22749009 -96995889 + MIR SINE MIR 172 262 0 3622 134 28 13 chr13 22749407 22750021 -96994877 + L1MB3 LINE L1 5559 6181 -2 315 267 100 0 chr13 22750446 22750536 -96994362 + MIR SINE MIR 56 154 -108 1936 132 35 0 chr13 22750541 22750829 -96994069 + AluSq SINE Alu 3 300 -13 1032 221 38 38 chr13 22750837 22751099 -96993799 + MLT1E LTR MaLR 332 593 0 1815 240 73 22 chr13 22751101 22751647 -96993251 - L1ME3 LINE L1 -104 6058 5485 326 250 23 0 chr13 22751650 22751738 -96993160 + MIR SINE MIR 117 206 -56 193 321 86 0 chr13 22751795 22751876 -96993022 - MIR SINE MIR -166 96 9 197 132 26 0 chr13 22752818 22752856 -96992042 + GA-rich Low_complexity Low_complexity 1 39 0 1320 162 46 12 chr13 22753378 22753619 -96991279 + MLT1A1 LTR MaLR 116 364 -1 775 245 125 14 chr13 22753858 22754066 -96990832 - MIR SINE MIR -14 248 18 423 281 136 25 chr13 22754236 22754435 -96990463 - MIR SINE MIR -14 248 28 352 263 73 47 chr13 22754476 22754667 -96990231 + MIR SINE MIR 16 207 -55 1818 189 20 85 chr13 22754706 22755202 -96989696 + MLT2C2 LTR ERVL 1 464 0 378 296 118 10 chr13 22756269 22756472 -96988426 + MER112 DNA MER1_type 3 227 -33 2946 147 68 9 chr13 22757532 22758076 -96986822 + L1MB3 LINE L1 5599 6174 -9 206 240 20 0 chr13 22761232 22761282 -96983616 + L2 LINE L2 3210 3260 -12 223 325 34 17 chr13 22761451 22761568 -96983330 + MIR SINE MIR 42 160 -102 312 247 169 0 chr13 22761739 22761828 -96983070 - MIR SINE MIR -82 180 77 246 244 252 9 chr13 22762444 22762559 -96982339 + LTR16C LTR ERVL 71 213 -278 529 200 25 0 chr13 22762581 22762701 -96982197 + LTR16C LTR ERVL 363 485 -6 375 163 11 22 chr13 22762939 22763031 -96981867 + GA-rich Low_complexity Low_complexity 3 93 0 1500 225 38 40 chr13 22763126 22763548 -96981350 + L1MC4a LINE L1 7346 7766 -42 685 140 0 0 chr13 22764378 22764478 -96980420 - FLAM_C SINE Alu -33 110 11 1990 126 7 0 chr13 22764491 22764793 -96980105 - AluSx SINE Alu -8 304 1 2294 66 0 7 chr13 22765600 22765901 -96978997 - AluY SINE Alu -12 299 1 1326 219 111 28 chr13 22766298 22766722 -96978176 + MLT1C LTR MaLR 1 459 -8 322 322 71 95 chr13 22766767 22766795 -96978103 + L1MC/D LINE L1 5322 5349 -2459 1700 168 0 25 chr13 22766795 22767110 -96977788 + AluJo SINE Alu 1 307 -5 322 322 71 95 chr13 22767110 22767364 -96977534 + L1MC/D LINE L1 5349 5597 -2211 2003 106 7 23 chr13 22767365 22767668 -96977230 - AluSx SINE Alu -14 298 1 1576 148 7 35 chr13 22767912 22768202 -96976696 - AluSx SINE Alu -22 290 9 516 248 36 22 chr13 22768259 22768396 -96976502 + MER74B LTR ERVL 67 205 -417 264 229 0 0 chr13 22768446 22768494 -96976404 - MIR SINE MIR -82 126 79 2634 26 0 3 chr13 22768557 22768869 -96976029 + AluYa5 SINE Alu 1 311 0 244 156 16 94 chr13 22768920 22768984 -96975914 - L2 LINE L2 0 3272 3214 263 175 18 0 chr13 22769125 22769182 -96975716 + CT-rich Low_complexity Low_complexity 1 58 0 2074 103 10 17 chr13 22769184 22769486 -96975412 - AluSp SINE Alu -2 311 12 2410 60 0 3 chr13 22769968 22770269 -96974629 - AluY SINE Alu -9 302 3 1811 188 135 12 chr13 22770479 22770895 -96974003 - MLT1C LTR MaLR 0 467 1 1934 148 0 7 chr13 22772685 22772995 -96971903 - AluSx SINE Alu -4 308 1 198 266 21 128 chr13 22773198 22773292 -96971606 - MIR SINE MIR -102 106 23 561 274 64 95 chr13 22773362 22773720 -96971178 - MLT1J LTR MaLR -54 457 111 279 178 41 27 chr13 22773659 22773732 -96971166 - LTR67 LTR ERVL -380 177 104 * 419 316 73 10 chr13 22774455 22774661 -96970237 - MARNA DNA Mariner -46 540 322 22 0 0 0 chr13 22776935 22776957 -96967941 + AT_rich Low_complexity Low_complexity 1 22 0 652 256 94 30 chr13 22778130 22778535 -96966363 + LTR33 LTR ERVL 1 467 -54 255 295 121 23 chr13 22778586 22778759 -96966139 - MIR SINE MIR -63 199 10 1457 154 39 29 chr13 22778827 22779106 -96965792 + AluJo SINE Alu 1 282 -30 735 277 98 5 chr13 22784977 22785201 -96959697 - MIR SINE MIR 0 262 18 186 217 0 43 chr13 22785699 22785745 -96959153 + L2 LINE L2 1402 1445 -1869 346 284 0 87 chr13 22786378 22786480 -96958418 + MIR SINE MIR 59 150 -112 2131 106 0 6 chr13 22786480 22786791 -96958107 + AluY SINE Alu 1 309 -2 346 284 0 87 chr13 22786791 22786815 -96958083 + MIR SINE MIR 150 174 -88 822 238 17 11 chr13 22786996 22787177 -96957721 + MER5A DNA MER1_type 1 182 -7 1733 182 21 49 chr13 22788584 22788969 -96955929 - MLT1A2 LTR MaLR 0 374 1 425 286 59 20 chr13 22788996 22789199 -96955699 + MIR SINE MIR 42 252 -10 1298 204 106 0 chr13 22789341 22789606 -96955292 + MLT1A1 LTR MaLR 73 365 0 1639 259 21 42 chr13 22789608 22790041 -96954857 + MLT1F LTR MaLR 61 485 -57 2006 133 56 19 chr13 22790041 22790363 -96954535 - MER1B DNA MER1_type 0 337 4 1639 259 21 42 chr13 22790363 22790407 -96954491 + MLT1F LTR MaLR 485 528 -14 2157 119 3 0 chr13 22790725 22791036 -96953862 + AluSp SINE Alu 1 312 -1 238 283 0 0 chr13 22791285 22791338 -96953560 + (CA)n Simple_repeat Simple_repeat 1 53 0 2155 117 0 0 chr13 22791788 22792097 -96952801 - AluSc SINE Alu 0 309 1 1452 104 0 5 chr13 22792165 22792366 -96952532 - AluSx SINE Alu -112 200 1 192 247 0 41 chr13 22792662 22792735 -96952163 + L2 LINE L2 2013 2082 -1232 199 107 0 0 chr13 22793082 22793110 -96951788 - L2 LINE L2 -1 3271 3244 195 42 0 0 chr13 22793112 22793136 -96951762 + (TG)n Simple_repeat Simple_repeat 1 24 0 260 222 287 9 chr13 22793555 22793663 -96951235 - L2 LINE L2 -1254 2060 1923 231 310 99 30 chr13 22793706 22793938 -96950960 + L1M4 LINE L1 3596 3843 -2303 1775 157 7 0 chr13 22793981 22794261 -96950637 + AluJb SINE Alu 1 282 -30 22 0 0 0 chr13 22794447 22794469 -96950429 + AT_rich Low_complexity Low_complexity 1 22 0 1308 200 48 10 chr13 22794478 22794768 -96950130 + AluJo SINE Alu 1 301 -11 357 338 38 8 chr13 22794958 22795091 -96949807 + L2 LINE L2 3134 3270 -2 783 229 60 28 chr13 22795706 22795955 -96948943 + L1ME LINE L1 5539 5795 -326 4000 68 9 4 chr13 22796199 22796725 -96948173 + L1PA6 LINE L1 5625 6153 -1 1259 180 56 88 chr13 22797383 22797760 -96947138 + MLT1A1 LTR MaLR 1 365 0 243 0 0 0 chr13 22798422 22798449 -96946449 + (T)n Simple_repeat Simple_repeat 1 27 0 1403 207 56 3 chr13 22799354 22799639 -96945259 + AluJb SINE Alu 1 300 -2 2376 135 25 3 chr13 22799639 22800014 -96944884 - MLT1B LTR MaLR -8 388 1 199 279 63 76 chr13 22800120 22800199 -96944699 - L2 LINE L2 -1 3312 3235 1737 137 0 53 chr13 22800248 22800547 -96944351 + AluJb SINE Alu 1 283 -29 216 0 0 0 chr13 22800550 22800574 -96944324 + (CAAAA)n Simple_repeat Simple_repeat 3 26 0 216 243 57 14 chr13 22800924 22800994 -96943904 - MIR SINE MIR -7 255 183 257 0 30 0 chr13 22802128 22802161 -96942737 + (TC)n Simple_repeat Simple_repeat 1 34 0 977 172 12 6 chr13 22802184 22802347 -96942551 - FRAM SINE Alu -2 164 1 4568 189 25 16 chr13 22802655 22802913 -96941985 + L1MB2 LINE L1 4899 5153 -1018 2072 126 3 0 chr13 22802913 22803215 -96941683 + AluSx SINE Alu 1 303 -9 4568 189 25 16 chr13 22803215 22804215 -96940683 + L1MB2 LINE L1 5153 6171 0 377 247 59 26 chr13 22804972 22805097 -96939801 + MIR SINE MIR 19 152 -75 237 167 0 0 chr13 22805196 22805250 -96939648 + GA-rich Low_complexity Low_complexity 1 54 0 269 240 52 65 chr13 22805540 22805694 -96939204 - L1ME3A LINE L1 0 6170 6019 361 305 41 25 chr13 22805839 22806036 -96938862 - L1MC5 LINE L1 -440 7521 7322 609 249 116 6 chr13 22806157 22806338 -96938560 + MER3 DNA MER1_type 9 209 0 529 252 51 34 chr13 22806339 22806573 -96938325 - L1MC5 LINE L1 -761 7200 6963 747 192 99 29 chr13 22806578 22806734 -96938164 - AluJo SINE Alu -9 303 133 2241 111 0 0 chr13 22806734 22807040 -96937858 - AluSc SINE Alu -3 306 1 747 192 99 29 chr13 22807040 22807055 -96937843 - AluJo SINE Alu -179 133 120 1545 165 6 115 chr13 22807072 22807411 -96937487 - AluJb SINE Alu 0 302 1 313 259 140 57 chr13 22807413 22807606 -96937292 - L1M4c LINE L1 -5298 1086 878 438 321 207 0 chr13 22808297 22808490 -96936408 + MIR SINE MIR 28 260 -2 674 306 79 45 chr13 22808537 22809089 -96935809 + L2 LINE L2 2481 3114 -199 1886 105 28 14 chr13 22809089 22809374 -96935524 - AluSx SINE Alu -23 289 1 674 306 79 45 chr13 22809374 22809576 -96935322 + L2 LINE L2 3114 3308 -5 3882 167 23 20 chr13 22810090 22810827 -96934071 - L1MB3 LINE L1 -2 6181 5443 877 207 0 6 chr13 22810910 22811074 -96933824 - FAM SINE Alu -22 163 1 21 57 0 0 chr13 22811089 22811124 -96933774 + AT_rich Low_complexity Low_complexity 1 35 0 24 32 0 0 chr13 22811968 22811999 -96932899 + AT_rich Low_complexity Low_complexity 1 31 0 4842 240 42 24 chr13 22813505 22813879 -96931019 + L1M4 LINE L1 11 377 -6165 1726 149 43 4 chr13 22813879 22814160 -96930738 - AluSx SINE Alu -20 292 1 4842 240 42 24 chr13 22814160 22815033 -96929865 + L1M4 LINE L1 377 1281 -5261 240 306 176 23 chr13 22815034 22815380 -96929518 - L2 LINE L2 -694 2620 2222 1417 188 41 80 chr13 22815584 22815946 -96928952 + MLT1A1 LTR MaLR 1 348 -17 437 217 19 9 chr13 22815960 22816066 -96928832 + MER53 DNA DNA 34 140 -49 421 306 56 19 chr13 22817288 22817448 -96927450 + MIR SINE MIR 1 166 -96 767 186 70 12 chr13 22819349 22819521 -96925377 - MER53 DNA DNA 0 189 8 248 247 161 21 chr13 22820158 22820251 -96924647 - L3 LINE CR1 -375 1202 1097 1929 135 0 13 chr13 22820261 22820565 -96924333 + AluSx SINE Alu 1 300 -12 186 395 0 12 chr13 22820704 22820790 -96924108 - L3 LINE CR1 -634 943 859 809 108 0 17 chr13 22820824 22820944 -96923954 - FLAM_C SINE Alu -19 124 7 2865 3 0 0 chr13 22822833 22823149 -96921749 - AluYb8 SINE Alu -2 316 1 185 378 22 0 chr13 22823401 22823491 -96921407 + MIR SINE MIR 57 148 -114 293 316 75 23 chr13 22823644 22823818 -96921080 + L1MC/D LINE L1 5533 5715 -2093 25 0 0 0 chr13 22823959 22823984 -96920914 + AT_rich Low_complexity Low_complexity 1 25 0 858 209 16 21 chr13 22823990 22824177 -96920721 - AluJo SINE Alu -10 302 117 180 0 0 0 chr13 22824350 22824370 -96920528 + (TAAAA)n Simple_repeat Simple_repeat 4 23 0 374 254 90 8 chr13 22825860 22825994 -96918904 + L1MA9 LINE L1 5996 6140 -172 384 340 107 40 chr13 22826249 22826853 -96918045 + L2 LINE L2 2639 3269 -3 466 322 84 10 chr13 22827132 22827334 -96917564 + MIR SINE MIR 12 228 -34 250 257 14 57 chr13 22827383 22827453 -96917445 - MIR SINE MIR -180 82 16 754 252 33 0 chr13 22828048 22828262 -96916636 - L1PA16 LINE L1 -1 6165 5945 331 56 0 19 chr13 22828404 22828458 -96916440 - AluSc SINE Alu 0 299 247 521 291 132 24 chr13 22830312 22830563 -96914335 - L2 LINE L2 -5 3308 3031 * 526 269 59 90 chr13 22830533 22830590 -96914308 + MIR SINE MIR 14 71 -191 1911 186 38 28 chr13 22830590 22830987 -96913911 + MER57A LTR ERV1 1 401 -2 526 269 59 90 chr13 22830987 22831185 -96913713 + MIR SINE MIR 71 261 -1 2475 139 67 5 chr13 22831212 22831658 -96913240 + L1MB2 LINE L1 5689 6162 -9 235 297 59 30 chr13 22831753 22831854 -96913044 + MER91C DNA MER1_type 29 132 -8 510 264 76 156 chr13 22831891 22832494 -96912404 - LTR67 LTR ERVL -1 556 2 367 323 83 0 chr13 22834165 22834298 -96910600 + MIR SINE MIR 93 236 -26 1242 254 59 67 chr13 22834610 22835134 -96909764 - MLT2B1 LTR ERVL 0 520 1 3306 171 11 19 chr13 22836043 22836674 -96908224 + L1PA13 LINE L1 4127 4754 -1392 5555 98 44 43 chr13 22836674 22837683 -96907215 + L1PA13 LINE L1 5151 6161 -2 3306 171 11 19 chr13 22837683 22837695 -96907203 + L1PA13 LINE L1 4754 4765 -1381 1935 123 3 0 chr13 22837704 22837988 -96906910 + AluSx SINE Alu 23 307 -5 433 320 39 0 chr13 22839261 22839389 -96905509 + MIR SINE MIR 71 203 -59 556 330 56 26 chr13 22839609 22839842 -96905056 - MIR SINE MIR -2 260 21 1376 187 88 38 chr13 22840646 22840949 -96903949 - L1MD3 LINE L1 -232 7763 7440 2008 194 14 6 chr13 22840949 22841309 -96903589 - MLT1A1 LTR MaLR -2 363 1 1376 187 88 38 chr13 22841309 22841347 -96903551 - L1MD3 LINE L1 -555 7440 7405 239 323 135 51 chr13 22841532 22842223 -96902675 - L2 LINE L2 -2358 956 208 639 174 25 0 chr13 22842273 22842394 -96902504 + L1MA8 LINE L1 6164 6287 -4 219 341 81 8 chr13 22842404 22842527 -96902371 - L2 LINE L2 -1 3271 3140 249 83 0 0 chr13 22842943 22842979 -96901919 + (CA)n Simple_repeat Simple_repeat 1 36 0 299 264 72 42 chr13 22843081 22843248 -96901650 - MIR3 SINE MIR -16 192 21 377 287 31 47 chr13 22843659 22843788 -96901110 + MIR SINE MIR 8 134 -128 5140 133 9 56 chr13 22843806 22844651 -96900247 - L1PA14 LINE L1 -1 6160 5375 1536 150 87 0 chr13 22844651 22844905 -96899993 - AluSg SINE Alu -34 276 1 5140 133 9 56 chr13 22844905 22845647 -96899251 - L1PA14 LINE L1 -786 5375 4600 2087 157 16 0 chr13 22845647 22846011 -96898887 + L1P LINE L1 3958 4327 -1819 202 299 102 16 chr13 22846012 22846139 -96898759 + MIR SINE MIR 125 262 0 219 266 0 110 chr13 22846347 22846415 -96898483 - L2 LINE L2 -20 3293 3239 2106 93 0 0 chr13 22846415 22846720 -96898178 + AluY SINE Alu 1 305 0 219 266 0 110 chr13 22846720 22846759 -96898139 - L2 LINE L2 -74 3239 3197 376 294 9 0 chr13 22847256 22847365 -96897533 + MIR SINE MIR 116 225 -37 1521 48 0 5 chr13 22848416 22848602 -96896296 + L1PA3 LINE L1 5968 6152 -3 255 61 0 0 chr13 22848646 22848679 -96896219 + (GA)n Simple_repeat Simple_repeat 1 33 0 595 138 0 0 chr13 22848679 22848766 -96896132 + LTR34 LTR ERV1 582 668 -31 442 243 115 40 chr13 22849025 22849173 -96895725 - L2 LINE L2 -1 3312 3154 368 284 12 77 chr13 22849881 22850050 -96894848 - MIR3 SINE MIR 0 208 51 182 278 33 44 chr13 22850065 22850155 -96894743 + L2 LINE L2 3184 3272 0 689 259 96 23 chr13 22850157 22850377 -96894521 - MIR SINE MIR -26 236 1 247 283 30 50 chr13 22852126 22852225 -96892673 - MIR3 SINE MIR -27 181 85 257 214 57 29 chr13 22852843 22852913 -96891985 - LTR33 LTR ERVL -2 519 448 559 262 115 16 chr13 22853023 22853206 -96891692 - LTR33 LTR ERVL -319 202 2 188 280 217 35 chr13 22853448 22853591 -96891307 - L2 LINE L2 -10 3262 3094 684 168 18 0 chr13 22853749 22853862 -96891036 - FLAM_C SINE Alu -18 115 1 774 177 8 0 chr13 22853935 22854059 -96890839 + FLAM_C SINE Alu 2 126 -17 2293 92 0 0 chr13 22854075 22854381 -96890517 + AluSx SINE Alu 1 306 -6 360 229 14 0 chr13 22854448 22854518 -96890380 - L2 LINE L2 -18 3254 3184 2327 97 3 0 chr13 22854567 22854877 -96890021 + AluSp SINE Alu 1 311 -2 261 0 0 0 chr13 22855069 22855098 -96889800 + (TAAA)n Simple_repeat Simple_repeat 2 30 0 28 0 0 0 chr13 22857110 22857138 -96887760 + AT_rich Low_complexity Low_complexity 1 28 0 5708 139 34 13 chr13 22857150 22857602 -96887296 - L1MA5A LINE L1 -29 6268 5827 279 0 0 0 chr13 22857602 22857633 -96887265 + (TG)n Simple_repeat Simple_repeat 2 32 0 5708 139 34 13 chr13 22857633 22858214 -96886684 - L1MA5A LINE L1 -470 5827 5209 1321 176 4 4 chr13 22858199 22858460 -96886438 + L1MA5A LINE L1 4963 5223 -923 * 21 36 0 0 chr13 22858649 22858677 -96886221 + AT_rich Low_complexity Low_complexity 1 28 0 737 285 162 27 chr13 22858750 22860165 -96884733 + L1ME1 LINE L1 3953 5572 -592 201 289 0 0 chr13 22860207 22860259 -96884639 - MIR SINE MIR -2 260 209 292 271 67 36 chr13 22860411 22860612 -96884286 + L1ME1 LINE L1 5758 5962 -204 5351 59 6 1 chr13 22860885 22861550 -96883348 + L1PA7 LINE L1 5472 6139 -15 581 264 96 42 chr13 22861792 22861804 -96883094 + L1ME LINE L1 4157 4167 -1979 1528 170 3 23 chr13 22861804 22862110 -96882788 + AluJo SINE Alu 1 300 -12 581 264 96 42 chr13 22862110 22862574 -96882324 + L1ME LINE L1 4167 4659 -1487 207 191 0 0 chr13 22862608 22862655 -96882243 + A-rich Low_complexity Low_complexity 1 47 0 271 350 61 19 chr13 22862870 22863084 -96881814 + L1ME LINE L1 5376 5598 -523 918 206 34 48 chr13 22863726 22864018 -96880880 + pTR5 LTR ERV1 741 1028 -1410 2855 182 118 39 chr13 22864201 22864838 -96880060 + LTR12 LTR ERV1 2 688 0 735 135 92 0 chr13 22864838 22864975 -96879923 + LTR12 LTR ERV1 270 714 0 686 23 11 0 chr13 22866115 22866203 -96878695 + (CA)n Simple_repeat Simple_repeat 2 90 0 2008 188 261 12 chr13 22866299 22866901 -96877997 + Tigger3(Golem) DNA MER2_type 2278 3029 0 1101 204 92 55 chr13 22866916 22867318 -96877580 - MLT2B1 LTR ERVL -40 475 13 274 239 42 14 chr13 22867326 22867397 -96877501 - HERVL-B1 LTR ERVL 0 5654 5582 775 72 0 0 chr13 22867401 22867498 -96877400 + L1PA4 LINE L1 2 98 -6048 * 39032 38 9 1 chr13 22867496 22872986 -96871912 + L1PA4 LINE L1 623 6152 -3 6310 173 31 9 chr13 22873073 22875238 -96869660 - ERVL-B2 LTR ERVL -66 5698 3433 1765 128 15 15 chr13 22875245 22875510 -96869388 - ERVL-B2 LTR ERVL -2909 2855 2591 * 3525 173 5 9 chr13 22875495 22875529 -96869369 - ERVL-B2 LTR ERVL -3432 2332 2299 1461 159 120 19 chr13 22875529 22875837 -96869061 + MER44D DNA MER2_type 1 609 0 3525 173 5 9 chr13 22875837 22876381 -96868517 - ERVL-B2 LTR ERVL -3465 2299 1756 835 211 0 0 chr13 22876412 22876568 -96868330 - FRAM SINE Alu -19 157 2 7769 207 70 10 chr13 22876568 22878218 -96866680 - ERVL-B2 LTR ERVL -4013 1751 2 291 143 0 57 chr13 22878219 22878289 -96866609 - MLT2B2 LTR ERVL 0 554 455 181 156 16 16 chr13 22878291 22878355 -96866543 + (TA)n Simple_repeat Simple_repeat 2 65 0 2103 185 131 19 chr13 22878381 22878809 -96866089 - MLT2B2 LTR ERVL -39 476 1 583 82 27 49 chr13 22880679 22880862 -96864036 + (CA)n Simple_repeat Simple_repeat 1 179 0 553 83 29 51 chr13 22880881 22881238 -96863660 + (CA)n Simple_repeat Simple_repeat 1 348 0 389 141 34 40 chr13 22881304 22881481 -96863417 + (CA)n Simple_repeat Simple_repeat 1 176 0 343 139 26 55 chr13 22881503 22881856 -96863042 + (CA)n Simple_repeat Simple_repeat 1 343 0 273 130 24 49 chr13 22881909 22882032 -96862866 + (CA)n Simple_repeat Simple_repeat 1 120 0 340 190 33 37 chr13 22882058 22882531 -96862367 + (CA)n Simple_repeat Simple_repeat 1 471 0 188 341 57 0 chr13 22883738 22883861 -96861037 + L2 LINE L2 2927 3056 -257 247 295 48 19 chr13 22885477 22885582 -96859316 + MIR SINE MIR 116 223 -39 219 132 0 53 chr13 22889278 22889354 -96855544 + (GAATG)n Simple_repeat Simple_repeat 3 74 0 336 276 45 35 chr13 22889951 22890106 -96854792 + MLT1E3 LTR MaLR 243 406 -218 180 216 0 0 chr13 22890830 22890881 -96854017 + T-rich Low_complexity Low_complexity 1 51 0 186 156 0 0 chr13 22891510 22891542 -96853356 + L2 LINE L2 3241 3272 0 232 272 136 19 chr13 22891729 22891832 -96853066 - L1MC4 LINE L1 -1 8041 7927 396 371 84 16 chr13 22892283 22892652 -96852246 - L1ME LINE L1 -472 5698 5305 388 318 95 56 chr13 22892816 22893044 -96851854 - L1ME LINE L1 -838 5308 5090 2055 110 40 0 chr13 22893044 22893344 -96851554 + AluSx SINE Alu 1 312 0 388 318 95 56 chr13 22893344 22893684 -96851214 - L1ME LINE L1 -1056 5090 4765 3931 179 51 60 chr13 22893684 22894647 -96850251 - LTR13 LTR ERVK 0 954 1 388 318 95 56 chr13 22894647 22895349 -96849549 - L1ME LINE L1 -1381 4765 3987 197 132 26 0 chr13 22897131 22897169 -96847729 + (TA)n Simple_repeat Simple_repeat 1 39 0 1304 96 0 119 chr13 22897188 22897449 -96847449 - AluSc SINE Alu -7 302 73 1464 172 62 0 chr13 22897469 22897725 -96847173 - L1MC3 LINE L1 -830 6955 6684 1330 262 51 0 chr13 22897729 22898141 -96846757 + L1MB8 LINE L1 1046 1478 -4906 677 192 7 34 chr13 22898142 22898288 -96846610 - MER4D LTR ERV1 0 903 762 2931 117 60 7 chr13 22898294 22898748 -96846150 + MER9 LTR ERVK 34 511 0 2320 174 30 111 chr13 22898748 22899449 -96845449 - MER4E LTR ERV1 -135 644 1 1146 261 127 40 chr13 22899456 22900234 -96844664 + L1MB8 LINE L1 1632 2477 -4086 712 182 15 15 chr13 22900248 22900380 -96844518 + FLAM_C SINE Alu 1 132 -1 8034 66 6 5 chr13 22900393 22901399 -96843499 + LTR13 LTR ERVK 1 1007 0 1128 101 6 24 chr13 22901399 22901567 -96843331 + AluSg/x SINE Alu 139 303 -7 10306 219 37 37 chr13 22901568 22901728 -96843170 + L1MB8 LINE L1 2449 2608 -3962 1978 149 0 0 chr13 22901728 22902030 -96842868 + AluSg SINE Alu 1 302 -8 10306 219 37 37 chr13 22902030 22903643 -96841255 + L1MB8 LINE L1 2608 4220 -2350 2185 105 0 0 chr13 22903643 22903937 -96840961 + AluSg SINE Alu 1 294 -16 10306 219 37 37 chr13 22903937 22906135 -96838763 + L1MB8 LINE L1 4220 6570 0 401 253 105 49 chr13 22906276 22906580 -96838318 + L1M4 LINE L1 3673 3993 -2153 445 308 104 51 chr13 22906606 22907057 -96837841 + REP3 LTR ERV 1 475 -87 21 36 0 0 chr13 22907355 22907383 -96837515 + AT_rich Low_complexity Low_complexity 1 28 0 438 244 0 0 chr13 22907895 22907985 -96836913 + LTR33A LTR ERVL 434 523 0 368 255 27 53 chr13 22908322 22908510 -96836388 + L1P5 LINE L1 4886 5068 -1078 2089 129 30 0 chr13 22908664 22908967 -96835931 + AluSx SINE Alu 1 312 0 334 291 83 29 chr13 22909047 22909288 -96835610 + L1P5 LINE L1 5294 5547 -609 1270 214 38 70 chr13 22909377 22909774 -96835124 - MLT1B LTR MaLR 0 390 7 333 106 0 0 chr13 22910665 22910712 -96834186 - MLT1E1 LTR MaLR -423 231 185 1031 242 36 4 chr13 22911673 22911994 -96832904 + MLT1A1 LTR MaLR 13 446 -21 420 200 62 31 chr13 22912138 22912268 -96832630 + MIR SINE MIR 50 183 -79 856 177 29 0 chr13 22913205 22913380 -96831518 + L1MB7 LINE L1 5288 5467 -707 698 155 8 25 chr13 22913397 22913636 -96831262 + GA-rich Low_complexity Low_complexity 1 234 0 438 176 22 33 chr13 22913802 22913893 -96831005 + L1MB7 LINE L1 5484 5573 -607 1026 233 43 30 chr13 22913938 22914239 -96830659 + L1MB7 LINE L1 5819 6123 -61 188 209 0 0 chr13 22914274 22914317 -96830581 - MIR SINE MIR -120 142 100 605 221 16 0 chr13 22919123 22919244 -96825654 - MER58B DNA MER1_type 0 341 219 1556 84 23 28 chr13 22919244 22919458 -96825440 + THE1B LTR MaLR 1 213 -151 1621 199 46 35 chr13 22920728 22921132 -96823766 + L1M2c LINE L1 1563 1974 -4875 1937 164 10 0 chr13 22921132 22921436 -96823462 + AluSx SINE Alu 3 309 -3 1621 199 46 35 chr13 22921436 22921463 -96823435 + L1M2c LINE L1 1974 1999 -4850 3628 176 11 28 chr13 22921478 22921581 -96823317 + L1M2c LINE L1 2230 2333 -4515 1852 166 7 7 chr13 22921581 22921882 -96823016 + AluSx SINE Alu 2 302 -10 3628 176 11 28 chr13 22921882 22922883 -96822015 + L1M2c LINE L1 2333 3319 -3529 1544 107 34 0 chr13 22922890 22923124 -96821774 + L1MA5 LINE L1 6056 6297 -3 1003 252 24 18 chr13 22923192 22923451 -96821447 - MLT1H LTR MaLR -248 301 1 4563 236 38 28 chr13 22923905 22925121 -96819777 + L1PA12 LINE L1 10 2319 -5265 3636 82 21 10 chr13 22925110 22925633 -96819265 + L1PA11 LINE L1 5259 5787 -387 * 21 0 0 0 chr13 22926340 22926361 -96818537 + AT_rich Low_complexity Low_complexity 1 21 0 2639 114 25 0 chr13 22926660 22927056 -96817842 + L1PA11 LINE L1 5769 6174 0 311 246 36 18 chr13 22927129 22927239 -96817659 - L1ME3 LINE L1 -2 6160 6049 * 2954 249 112 24 chr13 22927234 22927877 -96817021 - L1M4 LINE L1 -1130 5016 4431 1425 158 102 39 chr13 22927877 22928162 -96816736 - AluJo SINE Alu -9 303 1 2954 249 112 24 chr13 22928162 22928756 -96816142 - L1M4 LINE L1 -1715 4431 3670 558 43 0 0 chr13 22930858 22930927 -96813971 + (TA)n Simple_repeat Simple_repeat 1 69 0 2332 79 0 4 chr13 22931114 22931447 -96813451 + AluSq SINE Alu 5 336 0 483 288 192 30 chr13 22931451 22931889 -96813009 - L1ME4a LINE L1 -293 5828 5320 233 255 0 0 chr13 22932546 22932597 -96812301 + (TA)n Simple_repeat Simple_repeat 2 52 0 352 280 20 0 chr13 22934438 22934538 -96810360 + GA-rich Low_complexity Low_complexity 1 102 0 5572 152 52 11 chr13 22934672 22934937 -96809961 - L1MA8 LINE L1 0 6291 6039 2213 119 0 3 chr13 22934937 22935239 -96809659 + AluSq SINE Alu 3 303 -10 5572 152 52 11 chr13 22935239 22936428 -96808470 - L1MA8 LINE L1 -252 6039 4774 325 195 26 13 chr13 22936934 22937011 -96807887 + MER116 DNA Mariner 3 80 0 454 287 98 68 chr13 22937297 22937429 -96807469 - L1ME4a LINE L1 -847 5299 5172 1941 119 0 34 chr13 22937429 22937723 -96807175 - AluJb SINE Alu -15 297 14 454 287 98 68 chr13 22937723 22938061 -96806837 - L1ME4a LINE L1 -974 5172 4815 415 245 186 10 chr13 22938062 22938266 -96806632 - L1ME4a LINE L1 -1371 4775 4536 4262 267 110 35 chr13 22938385 22938439 -96806459 - L1ME LINE L1 -399 5763 5714 2063 132 3 0 chr13 22938439 22938735 -96806163 - AluSx SINE Alu -15 297 1 4262 267 110 35 chr13 22938735 22940065 -96804833 - L1ME LINE L1 -448 5714 4485 1844 148 0 30 chr13 22940065 22940369 -96804529 - AluJb SINE Alu -17 295 1 4262 267 110 35 chr13 22940369 22940604 -96804294 - L1ME LINE L1 -1677 4485 4269 333 0 0 0 chr13 22940604 22940641 -96804257 + (TG)n Simple_repeat Simple_repeat 1 37 0 4262 267 110 35 chr13 22940641 22940672 -96804226 - L1ME LINE L1 -1893 4269 4242 1953 143 13 7 chr13 22940672 22940980 -96803918 + AluSx SINE Alu 1 310 -2 4262 267 110 35 chr13 22940980 22942302 -96802596 - L1ME LINE L1 -1920 4242 2565 571 301 42 32 chr13 22942508 22942820 -96802078 - L1ME4a LINE L1 -1995 4151 3837 3236 135 22 15 chr13 22942909 22943221 -96801677 - L1PA16 LINE L1 -21 6145 5826 2396 104 0 0 chr13 22943221 22943528 -96801370 - AluSq SINE Alu -6 307 1 3236 135 22 15 chr13 22943528 22943755 -96801143 - L1PA16 LINE L1 -340 5826 5602 543 108 11 0 chr13 22943748 22943841 -96801057 - L1PA16 LINE L1 -774 5392 5299 * 1851 81 3 88 chr13 22943842 22944138 -96800760 - LTR14B LTR ERVK -321 287 17 340 309 121 18 chr13 22944231 22944396 -96800502 - MER5A DNA MER1_type 0 189 8 217 378 0 12 chr13 22944431 22944513 -96800385 - MER5A DNA MER1_type -31 158 78 2343 180 47 16 chr13 22944656 22945150 -96799748 - LTR22 LTR ERVK 0 509 1 1770 166 0 14 chr13 22945283 22945572 -96799326 + AluJo SINE Alu 1 285 -27 2370 101 0 3 chr13 22945583 22945891 -96799007 + AluSq SINE Alu 1 307 -6 374 287 161 36 chr13 22947087 22947310 -96797588 + MIR SINE MIR 2 252 -10 486 226 211 39 chr13 22947464 22947623 -96797275 - Charlie7 DNA MER1_type -3 2609 2479 2134 128 0 0 chr13 22947623 22947912 -96796986 - AluSc SINE Alu -20 289 1 486 226 211 39 chr13 22947912 22948089 -96796809 - Charlie7 DNA MER1_type -133 2479 2215 21 36 0 0 chr13 22948238 22948266 -96796632 + AT_rich Low_complexity Low_complexity 1 28 0 1857 150 37 0 chr13 22948271 22948565 -96796333 + AluSx SINE Alu 7 311 -1 1774 143 57 4 chr13 22948687 22948967 -96795931 - AluJo SINE Alu -16 296 2 602 141 8 125 chr13 22948990 22949118 -96795780 - FLAM_C SINE Alu -18 125 13 692 218 100 66 chr13 22949175 22949556 -96795342 - L1MC5 LINE L1 -285 7676 7283 2380 68 0 39 chr13 22949679 22949988 -96794910 - AluY SINE Alu -14 297 1 1835 155 4 0 chr13 22950029 22950326 -96794572 + AluJb SINE Alu 5 302 0 399 217 0 0 chr13 22950510 22950616 -96794282 + (TATATG)n Simple_repeat Simple_repeat 2 107 0 652 282 160 29 chr13 22950619 22950931 -96793967 + MER115 DNA AcHobo 54 406 -287 772 202 5 72 chr13 22950948 22951141 -96793757 + MER115 DNA AcHobo 514 693 0 1764 57 17 26 chr13 22951696 22951926 -96792972 + AluY SINE Alu 83 310 -1 820 200 24 29 chr13 22952373 22952543 -96792355 - FRAM SINE Alu -10 166 1 21 0 0 0 chr13 22952936 22952957 -96791941 + AT_rich Low_complexity Low_complexity 1 21 0 496 267 64 13 chr13 22953247 22953483 -96791415 + L2 LINE L2 2033 2280 -1034 1712 147 34 4 chr13 22953513 22953778 -96791120 - AluJb SINE Alu -39 273 1 1197 274 43 29 chr13 22953778 22954486 -96790412 - L1ME LINE L1 -4823 1257 536 776 316 41 64 chr13 22954630 22955161 -96789737 - L1ME LINE L1 -5539 531 13 21 0 0 0 chr13 22955350 22955371 -96789527 + AT_rich Low_complexity Low_complexity 1 21 0 1852 171 0 3 chr13 22955376 22955675 -96789223 + AluJb SINE Alu 1 298 -14 437 219 57 19 chr13 22955805 22955910 -96788988 + MLT1J2 LTR MaLR 3 111 -339 440 292 105 28 chr13 22955972 22956170 -96788728 + MLT1J2 LTR MaLR 238 448 -2 670 209 95 0 chr13 22956549 22956697 -96788201 + L1PA16 LINE L1 5999 6160 -6 1078 61 30 0 chr13 22956901 22957032 -96787866 - AluYb8 SINE Alu -183 135 1 1156 172 23 0 chr13 22957076 22957297 -96787601 - L1MA4 LINE L1 0 6300 6075 970 211 22 64 chr13 22957360 22957685 -96787213 - L1MB7 LINE L1 0 6321 6032 2192 91 66 90 chr13 22958056 22958462 -96786436 + LTR14B LTR ERVK 1 608 0 417 255 0 0 chr13 22958462 22958560 -96786338 - MIR SINE MIR -106 156 59 496 239 92 0 chr13 22958653 22958783 -96786115 - MIR SINE MIR -65 197 56 1567 191 26 26 chr13 22960641 22960950 -96783948 + AluJo SINE Alu 2 310 -2 184 309 0 15 chr13 22960965 22961033 -96783865 - MIR3 SINE MIR -32 176 110 322 182 76 0 chr13 22961106 22961172 -96783726 - MIR SINE MIR -60 148 78 1816 171 0 17 chr13 22961320 22961613 -96783285 - AluJo SINE Alu -24 288 1 22 0 0 0 chr13 22962032 22962054 -96782844 + AT_rich Low_complexity Low_complexity 1 22 0 361 262 72 42 chr13 22962163 22962703 -96782195 + L1MC/D LINE L1 4934 5483 -750 940 145 14 0 chr13 22962725 22962870 -96782028 + FAM SINE Alu 28 174 -11 1078 89 0 7 chr13 22962928 22963063 -96781835 - AluSq/x SINE Alu -179 134 1 920 136 80 2 chr13 22963174 22963444 -96781454 - MER1B DNA MER1_type -2 337 1 1209 111 0 0 chr13 22964186 22964348 -96780550 + FRAM SINE Alu 1 162 -14 538 186 73 8 chr13 22964550 22964674 -96780224 - L1MB4 LINE L1 -1 6179 6048 2120 113 26 26 chr13 22965131 22965441 -96779457 + AluSg SINE Alu 1 310 0 286 266 165 13 chr13 22965601 22965759 -96779139 - MIR SINE MIR -79 183 2 250 231 37 74 chr13 22965775 22965883 -96779015 - L1MB4 LINE L1 -2330 5478 5375 1650 162 7 4 chr13 22965906 22966177 -96778721 - AluJb SINE Alu -40 272 1 825 118 8 8 chr13 22966185 22966304 -96778594 - FLAM_C SINE Alu -19 124 6 238 274 94 9 chr13 22968465 22968571 -96776327 - L2 LINE L2 -1 3271 3157 880 234 84 5 chr13 22968813 22969027 -96775871 - L1ME1 LINE L1 -8 6158 5928 23 33 0 0 chr13 22969336 22969366 -96775532 + AT_rich Low_complexity Low_complexity 1 30 0 1250 161 17 132 chr13 22969675 22970086 -96774812 + LTR49 LTR ERV1 1 485 -254 338 174 181 87 chr13 22970109 22970247 -96774651 + LTR48 LTR ERV1 607 757 -30 2242 228 74 54 chr13 22970324 22970970 -96773928 + MER21B LTR ERV1 98 756 -107 1435 91 106 0 chr13 22971401 22971609 -96773289 + MER30 DNA MER1_type 1 230 0 2191 110 0 0 chr13 22972355 22972666 -96772232 - AluSx SINE Alu 0 311 1 927 157 7 0 chr13 22972774 22972921 -96771977 + L1MB4 LINE L1 5333 5480 -694 1387 172 38 48 chr13 22972930 22973221 -96771677 + AluJb SINE Alu 1 288 -24 920 207 0 0 chr13 22973274 22973438 -96771460 + FRAM SINE Alu 8 171 -5 3736 169 35 1 chr13 22973456 22974112 -96770786 + L1MB4 LINE L1 5470 6152 -28 2536 69 0 0 chr13 22974112 22974415 -96770483 + AluY SINE Alu 1 303 -8 3736 169 35 1 chr13 22974415 22974446 -96770452 + L1MB4 LINE L1 6152 6180 0 802 233 0 0 chr13 22975882 22976045 -96768853 - FRAM SINE Alu -3 163 1 667 192 98 39 chr13 22977099 22977302 -96767596 - MIR SINE MIR -43 219 5 2294 115 0 3 chr13 22977935 22978240 -96766658 - AluSx SINE Alu -7 305 2 195 129 0 0 chr13 22978241 22978272 -96766626 + (T)n Simple_repeat Simple_repeat 1 31 0 233 236 115 54 chr13 22978312 22978460 -96766438 + L1ME4a LINE L1 5964 6120 -1 2057 96 67 3 chr13 22978838 22979120 -96765778 + AluSx SINE Alu 1 300 -12 718 281 19 27 chr13 22979653 22979916 -96764982 - MIR SINE MIR 0 262 2 234 0 0 0 chr13 22980486 22980512 -96764386 + (TA)n Simple_repeat Simple_repeat 2 27 0 1963 163 0 16 chr13 22980615 22980928 -96763970 - AluJo SINE Alu -4 308 1 1963 103 59 7 chr13 22981638 22981953 -96762945 + AluSq SINE Alu 1 313 0 512 221 27 40 chr13 22982270 22982419 -96762479 + MLT1H LTR MaLR 22 168 -381 2272 103 3 0 chr13 22982506 22982806 -96762092 + AluSx SINE Alu 12 312 0 252 184 447 0 chr13 22982857 22982960 -96761938 + HAL1 LINE L1 1290 1438 -1069 771 246 111 47 chr13 22982980 22982993 -96761905 + HAL1 LINE L1 2075 2086 -421 1608 184 16 44 chr13 22982993 22983115 -96761783 + AluJb SINE Alu 1 125 -187 2585 63 0 0 chr13 22983115 22983414 -96761484 - AluY SINE Alu -12 299 1 1608 184 16 44 chr13 22983414 22983611 -96761287 + AluJb SINE Alu 125 311 -1 771 246 111 47 chr13 22983611 22984004 -96760894 + HAL1 LINE L1 2086 2507 0 294 29 0 0 chr13 22984538 22984573 -96760325 + (CA)n Simple_repeat Simple_repeat 2 36 0 388 286 37 37 chr13 22984576 22984737 -96760161 + L1ME4a LINE L1 5941 6101 -20 1402 202 80 3 chr13 22985685 22985972 -96758926 - AluJb SINE Alu -3 309 1 339 252 310 7 chr13 22986368 22986523 -96758375 + L1MCc LINE L1 13 214 -6209 2399 255 108 65 chr13 22986536 22987714 -96757184 + L1MCc LINE L1 303 1531 -4892 2088 245 80 50 chr13 22987730 22988521 -96756377 + L1MCc LINE L1 1751 2581 -4541 10122 119 41 0 chr13 22988521 22990790 -96754108 + L1PA10 LINE L1 3859 6167 -1 2088 245 80 50 chr13 22990790 22991007 -96753891 + L1MCc LINE L1 2581 2790 -4332 411 206 57 4 chr13 22991007 22991153 -96753745 + MER3 DNA MER1_type 1 203 -6 1963 151 14 0 chr13 22991194 22991486 -96753412 - AluJb SINE Alu -16 296 1 2156 120 10 16 chr13 22991518 22991826 -96753072 + AluSx SINE Alu 1 306 -6 709 229 47 17 chr13 22991827 22992063 -96752835 + L1MCc LINE L1 2825 3067 -4055 894 206 0 0 chr13 22992445 22992605 -96752293 - FRAM SINE Alu -5 161 2 2355 106 3 0 chr13 22993406 22993709 -96751189 - AluSq SINE Alu -9 304 1 601 177 77 23 chr13 22994484 22994614 -96750284 - FLAM_C SINE Alu -5 138 2 459 273 62 24 chr13 22996837 22997046 -96747852 - MIR SINE MIR -38 224 8 266 210 0 32 chr13 22997049 22997111 -96747787 + tRNA-Gln-CAG tRNA tRNA 5 64 -11 249 322 74 0 chr13 22997128 22997249 -96747649 + MIR SINE MIR 110 239 -23 186 231 93 46 chr13 22997642 22997750 -96747148 + L2 LINE L2 1429 1541 -1773 1549 132 30 117 chr13 22997897 22998230 -96746668 - AluJb SINE Alu -8 304 1 196 241 0 0 chr13 22998321 22998375 -96746523 + MIR SINE MIR 204 257 -5 823 278 304 5 chr13 22998528 22999331 -96745567 + L2 LINE L2 1587 2629 -685 746 264 104 13 chr13 22999403 22999721 -96745177 + LTR16A LTR ERVL 104 450 0 1093 271 59 23 chr13 22999745 23000366 -96744532 + L2 LINE L2 2668 3308 -5 1798 176 0 7 chr13 23000797 23001092 -96743806 - AluJb SINE Alu -19 293 1 762 159 0 23 chr13 23001138 23001270 -96743628 - FLAM_A SINE Alu 0 142 14 194 313 150 7 chr13 23001877 23002024 -96742874 - MIR SINE MIR -74 188 21 1500 172 84 4 chr13 23002203 23002476 -96742422 + AluJo SINE Alu 1 295 -17 1933 156 10 3 chr13 23003444 23003739 -96741159 - AluJo SINE Alu -15 297 1 2413 82 117 107 chr13 23004434 23005185 -96739713 + pTR5 LTR ERV1 13 2435 -3 8539 112 18 4 chr13 23005185 23006415 -96738483 + Tigger1 DNA MER2_type 232 1478 -940 2440 94 3 0 chr13 23006416 23006724 -96738174 + AluSq SINE Alu 1 309 -4 595 194 56 76 chr13 23006742 23006886 -96738012 + FRAM SINE Alu 20 160 -16 6227 119 18 8 chr13 23006886 23007824 -96737074 + Tigger1 DNA MER2_type 1471 2418 0 384 315 40 0 chr13 23007864 23008013 -96736885 - L1ME3A LINE L1 -310 5860 5706 1486 201 3 43 chr13 23008014 23008210 -96736688 - AluJo SINE Alu -2 310 131 2811 20 0 0 chr13 23008210 23008515 -96736383 + AluYb8 SINE Alu 1 305 -13 1486 201 3 43 chr13 23008515 23008641 -96736257 - AluJo SINE Alu -181 131 1 2106 125 0 3 chr13 23008643 23008932 -96735966 - AluSx SINE Alu -24 288 1 336 245 8 12 chr13 23008940 23009058 -96735840 - L1ME3A LINE L1 -803 5343 5245 293 280 102 25 chr13 23009058 23009176 -96735722 + MIR SINE MIR 48 174 -88 1695 155 4 25 chr13 23009199 23009477 -96735421 - AluJo SINE Alu -39 273 2 244 257 64 36 chr13 23010036 23010176 -96734722 - L1ME3A LINE L1 -1081 5065 4922 306 258 120 60 chr13 23010281 23010448 -96734450 - L1ME3A LINE L1 -1421 4725 4549 22 56 0 19 chr13 23010839 23010871 -96734027 + AT_rich Low_complexity Low_complexity 1 33 -20 791 186 0 0 chr13 23010871 23010989 -96733909 - FLAM_C SINE Alu -15 118 1 22 56 0 19 chr13 23010989 23011010 -96733888 + AT_rich Low_complexity Low_complexity 33 53 0 307 297 38 38 chr13 23011370 23011609 -96733289 + L1ME4a LINE L1 5714 5952 -169 2031 115 0 33 chr13 23011675 23011979 -96732919 + AluSx SINE Alu 1 294 -18 2288 92 7 0 chr13 23011985 23012280 -96732618 + AluSc SINE Alu 1 297 -12 221 186 0 0 chr13 23012326 23012369 -96732529 - L2 LINE L2 -248 3065 3023 470 279 114 0 chr13 23012682 23012822 -96732076 - MER63 DNA MER1_type -276 786 5 447 148 70 120 chr13 23012865 23013007 -96731891 + L1ME4a LINE L1 5985 6119 -2 2140 122 0 0 chr13 23013372 23013659 -96731239 - AluSx SINE Alu -25 287 1 3220 177 71 38 chr13 23013665 23014333 -96730565 - L1MB5 LINE L1 0 6174 5480 2378 78 3 3 chr13 23014333 23014641 -96730257 + AluY SINE Alu 1 308 -3 3220 177 71 38 chr13 23014641 23014680 -96730218 - L1MB5 LINE L1 -694 5480 5444 447 216 85 65 chr13 23014830 23014983 -96729915 + MER63A DNA MER1_type 53 208 -2 21 0 0 0 chr13 23015416 23015437 -96729461 + AT_rich Low_complexity Low_complexity 1 21 0 737 185 23 0 chr13 23015946 23016076 -96728822 - FRAM SINE Alu -8 168 36 2203 112 10 3 chr13 23016128 23016424 -96728474 - AluSq SINE Alu -15 298 1 427 300 206 26 chr13 23016730 23017157 -96727741 + MLT1L LTR MaLR 106 609 -6 1679 174 14 3 chr13 23019204 23019498 -96725400 - AluJo SINE Alu -15 297 1 2011 135 22 19 chr13 23019865 23020176 -96724722 - AluSx SINE Alu 0 312 1 2349 99 0 0 chr13 23021748 23022050 -96722848 + AluSg SINE Alu 1 302 -8 225 268 98 62 chr13 23022334 23022446 -96722452 + L2 LINE L2 3150 3265 -7 1883 176 32 26 chr13 23022638 23023018 -96721880 + MLT1B LTR MaLR 1 382 -8 449 168 74 60 chr13 23023306 23023455 -96721443 - L1ME4a LINE L1 -9 6112 5962 650 170 10 0 chr13 23023612 23023712 -96721186 - FLAM_A SINE Alu -22 120 20 845 132 47 23 chr13 23024024 23024153 -96720745 + AluJo SINE Alu 3 134 -178 197 278 56 0 chr13 23024736 23024790 -96720108 + MIR3 SINE MIR 100 156 -52 21 36 0 0 chr13 23025044 23025072 -96719826 + AT_rich Low_complexity Low_complexity 1 28 0 341 294 109 0 chr13 23027070 23027189 -96717709 - L1ME LINE L1 -379 5742 5611 678 183 104 0 chr13 23027220 23027335 -96717563 - FLAM_C SINE Alu -13 130 4 29 0 0 0 chr13 23027336 23027365 -96717533 + AT_rich Low_complexity Low_complexity 1 29 0 276 266 0 0 chr13 23028058 23028122 -96716776 + MIR3 SINE MIR 138 201 -7 1980 106 84 3 chr13 23029310 23029594 -96715304 - AluSg SINE Alu -3 307 1 1965 141 7 3 chr13 23029709 23029999 -96714899 - AluSx SINE Alu -20 292 2 636 133 95 0 chr13 23030009 23030114 -96714784 - AluSg/x SINE Alu -12 297 183 2544 115 4 117 chr13 23030119 23030624 -96714274 - LTR46 LTR ERV1 -11 449 2 969 87 0 8 chr13 23030625 23030752 -96714146 - AluSg/x SINE Alu -103 207 82 3845 126 153 93 chr13 23031048 23032346 -96712552 - pTR5 LTR ERV1 0 2438 738 786 235 161 29 chr13 23033372 23033528 -96711370 - L1ME4a LINE L1 -16 6105 5971 2091 120 7 0 chr13 23033528 23033819 -96711079 - AluSq SINE Alu -20 293 1 786 235 161 29 chr13 23033819 23034108 -96710790 - L1ME4a LINE L1 -150 5971 5601 416 190 21 92 chr13 23034158 23034230 -96710668 + L1MB8 LINE L1 6044 6103 -75 1928 166 10 0 chr13 23034230 23034532 -96710366 + AluJb SINE Alu 1 305 -7 416 190 21 92 chr13 23034532 23034601 -96710297 + L1MB8 LINE L1 6103 6175 -3 480 239 89 111 chr13 23034661 23034705 -96710193 - L1ME4a LINE L1 -81 6040 5997 2232 100 10 3 chr13 23034705 23035005 -96709893 - AluSx SINE Alu -10 302 1 480 239 89 111 chr13 23035005 23035278 -96709620 - L1ME4a LINE L1 -124 5997 5734 2721 20 0 0 chr13 23035278 23035577 -96709321 + AluYa5 SINE Alu 1 299 -12 480 239 89 111 chr13 23035577 23035719 -96709179 - L1ME4a LINE L1 -387 5734 5590 344 67 0 100 chr13 23035733 23035793 -96709105 - L1MB3 LINE L1 -52 6131 6078 1553 156 45 24 chr13 23035804 23036093 -96708805 - AluJb SINE Alu -17 295 1 193 319 83 28 chr13 23038186 23038330 -96706568 - L2 LINE L2 -1016 2298 2147 987 211 12 40 chr13 23038455 23038777 -96706121 + L1M4 LINE L1 972 1284 -5258 * 5170 145 8 4 chr13 23038751 23039570 -96705328 + L1PA16 LINE L1 5833 6655 -9 2246 188 39 79 chr13 23039580 23039687 -96705211 + L1M4 LINE L1 1255 1365 -5281 1897 157 26 7 chr13 23039687 23039993 -96704905 + AluJo SINE Alu 1 312 0 2246 188 39 79 chr13 23039993 23040570 -96704328 + L1M4 LINE L1 1365 1912 -4734 1879 164 7 0 chr13 23040572 23040859 -96704039 + AluJb SINE Alu 1 289 -23 893 168 62 19 chr13 23041421 23041582 -96703316 - AluJo/FRAM SINE Alu -11 301 134 432 234 52 0 chr13 23041585 23041662 -96703236 - AluJ/FLAM SINE Alu -230 82 2 1740 132 4 0 chr13 23041728 23041970 -96702928 + AluSx SINE Alu 1 243 -69 1980 121 7 4 chr13 23042279 23042601 -96702297 + AluSx SINE Alu 1 323 0 714 198 8 0 chr13 23043145 23043266 -96701632 - FLAM_A SINE Alu -7 126 5 354 23 0 0 chr13 23043291 23043334 -96701564 + (TG)n Simple_repeat Simple_repeat 2 44 0 1927 152 3 7 chr13 23043344 23043647 -96701251 - AluSx SINE Alu -10 302 1 599 162 0 81 chr13 23043753 23043889 -96701009 - L1PA10 LINE L1 0 6168 6044 1526 163 22 18 chr13 23043892 23044169 -96700729 - LTR14B LTR ERVK -23 585 308 289 262 50 41 chr13 23047310 23047564 -96697334 + ALR/Alpha Satellite centromeric 1 256 0 2546 68 0 0 chr13 23047765 23048075 -96696823 + AluY SINE Alu 1 310 -1 28 0 0 47 chr13 23050055 23050082 -96694816 + AT_rich Low_complexity Low_complexity 1 27 -14 2242 100 0 3 chr13 23050082 23050371 -96694527 - AluY SINE Alu -23 288 1 28 0 0 47 chr13 23050371 23050386 -96694512 + AT_rich Low_complexity Low_complexity 27 41 0 2697 17 0 0 chr13 23053193 23053486 -96691412 - AluYa5 SINE Alu -18 293 1 3105 180 50 41 chr13 23053488 23054194 -96690704 + LTR8A LTR ERV1 16 727 0 486 308 35 0 chr13 23055060 23055232 -96689666 + L1PA16 LINE L1 2467 2644 -3502 * 941 165 88 0 chr13 23055231 23055413 -96689485 - L1PA15-16 LINE L1 -3932 2917 2720 9024 200 24 7 chr13 23055414 23058863 -96686035 + L1PA16 LINE L1 2658 6165 -1 258 32 0 0 chr13 23058900 23058931 -96685967 + (TAGA)n Simple_repeat Simple_repeat 3 33 0 1575 259 25 0 chr13 23058953 23059359 -96685539 - L1M4 LINE L1 -940 5206 4791 257 132 0 38 chr13 23059943 23059996 -96684902 + (TATATG)n Simple_repeat Simple_repeat 4 54 0 360 0 0 0 chr13 23060059 23060099 -96684799 + (TG)n Simple_repeat Simple_repeat 1 40 0 408 248 31 47 chr13 23060544 23060673 -96684225 + MLT1D LTR MaLR 343 469 -36 21 0 0 0 chr13 23061088 23061109 -96683789 + AT_rich Low_complexity Low_complexity 1 21 0 258 227 108 70 chr13 23061223 23061509 -96683389 - L1M4 LINE L1 -2866 3280 2984 1372 209 100 6 chr13 23061565 23061885 -96683013 + MLT1D LTR MaLR 156 505 0 218 207 244 0 chr13 23062576 23062658 -96682240 - MIR SINE MIR -71 137 36 396 0 0 0 chr13 23063602 23063646 -96681252 + (TG)n Simple_repeat Simple_repeat 2 45 0 253 290 139 23 chr13 23064278 23064426 -96680472 + MIR SINE MIR 5 142 -66 188 175 25 0 chr13 23065271 23065311 -96679587 + MIR SINE MIR 105 145 -63 1066 96 12 0 chr13 23067664 23067830 -96677068 + (TTTC)n Simple_repeat Simple_repeat 3 170 0 3481 66 26 18 chr13 23067830 23068286 -96676612 - L1PA7 LINE L1 -13 6141 5682 227 351 115 20 chr13 23068995 23069343 -96675555 + L1ME LINE L1 5504 5884 -237 26 0 0 0 chr13 23069747 23069773 -96675125 + AT_rich Low_complexity Low_complexity 1 26 0 603 234 28 0 chr13 23070151 23070296 -96674602 - L1PA16 LINE L1 0 6166 6018 4133 154 16 25 chr13 23070528 23070720 -96674178 - L1MA3 LINE L1 0 6305 6113 189 0 0 0 chr13 23070720 23070741 -96674157 + (TTA)n Simple_repeat Simple_repeat 2 22 0 2326 59 0 3 chr13 23070741 23071027 -96673871 - AluY SINE Alu -26 285 1 4133 154 16 25 chr13 23071027 23071597 -96673301 - L1MA3 LINE L1 -190 6115 5549 198 0 0 0 chr13 23072533 23072555 -96672343 + (TTTTTG)n Simple_repeat Simple_repeat 2 23 0 767 188 0 0 chr13 23073319 23073436 -96671462 + FLAM_A SINE Alu 1 117 -16 43801 47 7 2 chr13 23073437 23079032 -96665866 - L1PA4 LINE L1 0 6155 590 180 0 0 0 chr13 23079032 23079052 -96665846 + (CAGG)n Simple_repeat Simple_repeat 2 21 0 43801 47 7 2 chr13 23079052 23079571 -96665327 - L1PA4 LINE L1 -5565 590 8 8956 51 5 0 chr13 23079571 23080573 -96664325 - LTR13 LTR ERVK 0 1007 1 382 348 18 0 chr13 23082207 23082319 -96662579 - L2 LINE L2 -259 3054 2941 195 167 48 24 chr13 23084092 23084134 -96660764 + MER5A DNA MER1_type 43 85 -104 * 361 211 156 0 chr13 23084118 23084208 -96660690 - MER5A DNA MER1_type -77 112 9 5186 109 142 131 chr13 23084739 23086285 -96658613 - pTR5 LTR ERV1 0 2438 741 297 0 0 0 chr13 23087949 23087982 -96656916 + (TG)n Simple_repeat Simple_repeat 1 33 0 479 188 21 0 chr13 23088481 23088577 -96656321 - Charlie1 DNA MER1_type -45 2716 2619 986 201 25 0 chr13 23090043 23090247 -96654651 + AluJb SINE Alu 97 305 -7 1125 94 0 0 chr13 23090584 23090722 -96654176 + AluSq/x SINE Alu 1 138 -175 266 187 0 10 chr13 23090750 23090809 -96654089 - Alu SINE Alu -13 289 248 1620 184 24 3 chr13 23092273 23092567 -96652331 - AluJb SINE Alu -12 300 1 23 0 0 0 chr13 23093004 23093027 -96651871 + AT_rich Low_complexity Low_complexity 1 23 0 2075 65 11 8 chr13 23096131 23096391 -96648507 - AluSg1 SINE Alu -14 295 35 22 0 0 0 chr13 23096401 23096423 -96648475 + AT_rich Low_complexity Low_complexity 1 22 0 1094 88 0 0 chr13 23096423 23096570 -96648328 - AluY SINE Alu -8 303 157 588 306 95 6 chr13 23096607 23096966 -96647932 + L1M4 LINE L1 4549 4939 -1207 453 221 0 23 chr13 23096966 23097052 -96647846 + MER21B LTR ERV1 1 84 -779 207 0 0 0 chr13 23097244 23097267 -96647631 + (TTAA)n Simple_repeat Simple_repeat 1 23 0 2054 111 0 10 chr13 23097267 23097556 -96647342 - AluSx SINE Alu -26 286 1 948 185 83 0 chr13 23097784 23097989 -96646909 - MER99 DNA DNA -271 557 336 2159 103 0 30 chr13 23097990 23098291 -96646607 - AluSq SINE Alu -21 292 1 1116 130 36 36 chr13 23098606 23098798 -96646100 - AluJb SINE Alu -120 192 1 401 185 193 8 chr13 23098798 23098917 -96645981 - L1MB8 LINE L1 -269 5909 5769 5353 118 48 62 chr13 23098928 23099415 -96645483 - L1MA4A LINE L1 -1 6302 5810 180 0 0 0 chr13 23099415 23099435 -96645463 + (TA)n Simple_repeat Simple_repeat 2 21 0 5353 118 48 62 chr13 23099435 23099485 -96645413 - L1MA4A LINE L1 -493 5810 5761 2247 100 0 31 chr13 23099485 23099804 -96645094 - AluSg1 SINE Alu 0 309 1 5353 118 48 62 chr13 23099804 23100256 -96644642 - L1MA4A LINE L1 -542 5761 5304 230 56 28 0 chr13 23100256 23100292 -96644606 + (TATG)n Simple_repeat Simple_repeat 4 40 0 2043 119 11 3 chr13 23100292 23100577 -96644321 - AluSq SINE Alu -26 287 1 5387 146 36 4 chr13 23100577 23101668 -96643230 - L1 LINE L1 -3764 3084 1956 2041 151 3 0 chr13 23101668 23101972 -96642926 - AluSx SINE Alu -7 305 1 5387 146 36 4 chr13 23101972 23101997 -96642901 - L1 LINE L1 -4892 1956 1933 5902 107 20 31 chr13 23102241 23103157 -96641741 - L1PA15 LINE L1 -6 6159 5254 1382 115 0 21 chr13 23103169 23103361 -96641537 - AluSg SINE Alu -94 216 29 10271 150 22 17 chr13 23103361 23103836 -96641062 - L1PA15-16 LINE L1 -3489 3360 2889 561 30 0 0 chr13 23103836 23103903 -96640995 + (TTTC)n Simple_repeat Simple_repeat 3 69 0 1867 157 4 0 chr13 23103903 23104177 -96640721 - AluSc SINE Alu -34 275 1 10271 150 22 17 chr13 23104177 23105745 -96639153 - L1PA15-16 LINE L1 -3959 2890 1305 2519 157 15 0 chr13 23105751 23106153 -96638745 - L1PA15-16 LINE L1 -6437 412 5 238 291 118 52 chr13 23106151 23106481 -96638417 - L1M4 LINE L1 -2316 3830 3479 * 654 156 0 0 chr13 23106492 23106588 -96638310 + AluSg/x SINE Alu 201 296 -13 622 194 119 12 chr13 23106935 23107095 -96637803 + MER96B DNA MER1_type? 3 179 -238 514 268 0 8 chr13 23107620 23107743 -96637155 - MER112 DNA MER1_type 0 260 139 545 246 24 53 chr13 23107827 23108039 -96636859 + MIR3 SINE MIR 13 208 0 1969 125 0 11 chr13 23108098 23108407 -96636491 + AluSx SINE Alu 1 292 -20 369 0 0 0 chr13 23109031 23109072 -96635826 + (TG)n Simple_repeat Simple_repeat 2 42 0 233 282 103 0 chr13 23109147 23109225 -96635673 - MIR SINE MIR -29 233 148 740 206 52 134 chr13 23109255 23109809 -96635089 - L1MC5 LINE L1 -48 7913 7405 429 225 117 0 chr13 23109809 23109920 -96634978 - MIR SINE MIR -42 220 97 216 0 0 0 chr13 23110209 23110233 -96634665 + (CAAAA)n Simple_repeat Simple_repeat 1 24 0 225 0 0 0 chr13 23111277 23111302 -96633596 + (TTTTG)n Simple_repeat Simple_repeat 2 26 0 1919 123 0 0 chr13 23111305 23111582 -96633316 - AluSx SINE Alu -25 287 11 204 365 73 7 chr13 23113333 23113470 -96631428 + L3b LINE CR1 1116 1261 -322 1985 134 26 10 chr13 23113671 23113978 -96630920 - AluSx SINE Alu 0 312 1 636 310 16 5 chr13 23114723 23114910 -96629988 - MER5A DNA MER1_type 0 189 1 276 252 153 9 chr13 23115670 23115781 -96629117 + MIR SINE MIR 81 207 -55 671 163 16 16 chr13 23116102 23116225 -96628673 - AluJ SINE Alu 0 312 190 720 180 0 0 chr13 23116229 23116351 -96628547 - AluJ SINE Alu -179 133 12 2248 93 3 19 chr13 23116384 23116605 -96628293 - AluSp SINE Alu -5 308 92 5384 127 52 19 chr13 23116605 23117543 -96627355 + LTR5 LTR ERVK 1 969 0 2248 93 3 19 chr13 23117543 23117634 -96627264 - AluSp SINE Alu -221 92 1 2216 107 0 0 chr13 23118418 23118717 -96626181 + AluSc SINE Alu 1 299 -10 1478 190 17 3 chr13 23118769 23119058 -96625840 + AluSx SINE Alu 1 293 -19 353 45 0 0 chr13 23119075 23119119 -96625779 + (CA)n Simple_repeat Simple_repeat 1 44 0 225 231 39 13 chr13 23119609 23119687 -96625211 + A-rich Low_complexity Low_complexity 4 83 0 902 107 0 0 chr13 23119757 23119878 -96625020 - FRAM SINE Alu -28 148 28 3141 181 51 7 chr13 23119878 23120470 -96624428 + MER54A LTR ERVL 284 901 0 854 58 117 0 chr13 23121927 23122047 -96622851 - MER85 DNA T2_type -2 137 4 208 206 32 0 chr13 23122623 23122686 -96622212 + (TA)n Simple_repeat Simple_repeat 1 65 0 1585 193 3 10 chr13 23123415 23123726 -96621172 - AluJb SINE Alu -3 309 1 13965 230 40 30 chr13 23124876 23125911 -96618987 - L1PA16 LINE L1 -9 7595 6572 2333 68 3 0 chr13 23125911 23126207 -96618691 + AluY SINE Alu 3 299 -12 13965 230 40 30 chr13 23126207 23127688 -96617210 - L1PA16 LINE L1 -1032 6572 5107 2113 105 0 20 chr13 23127688 23127994 -96616904 - AluY SINE Alu -11 300 1 13965 230 40 30 chr13 23127994 23129226 -96615672 - L1PA16 LINE L1 -2497 5107 3889 2123 97 0 3 chr13 23129226 23129514 -96615384 + AluY SINE Alu 3 289 -22 13965 230 40 30 chr13 23129514 23132690 -96612208 - L1PA16 LINE L1 -3715 3889 8 2130 94 0 16 chr13 23132866 23133174 -96611724 + AluY SINE Alu 3 305 -6 682 137 0 10 chr13 23133361 23133463 -96611435 - AluS SINE Alu -211 102 2 2323 94 0 0 chr13 23133623 23133931 -96610967 - AluSg SINE Alu -2 308 1 378 221 0 0 chr13 23136458 23136553 -96608345 + (TGGA)n Simple_repeat Simple_repeat 4 98 0 518 314 43 84 chr13 23136566 23136936 -96607962 + L2 LINE L2 2917 3271 -1 180 0 0 0 chr13 23140713 23140733 -96604165 + (A)n Simple_repeat Simple_repeat 1 20 0 195 180 213 0 chr13 23141509 23141570 -96603328 - MER5A DNA MER1_type -106 83 10 256 324 48 0 chr13 23141689 23141794 -96603104 - L2 LINE L2 -941 2373 2264 2066 110 0 0 chr13 23141986 23142276 -96602622 + AluSx SINE Alu 21 310 -2 295 311 57 0 chr13 23143523 23143648 -96601250 + MIR SINE MIR 20 150 -63 206 116 47 23 chr13 23144404 23144425 -96600473 + (TTCTG)n Simple_repeat Simple_repeat 2 21 -24 1416 172 15 78 chr13 23144425 23144757 -96600141 - AluJo SINE Alu -1 311 1 206 116 47 23 chr13 23144757 23144778 -96600120 + (TTCTG)n Simple_repeat Simple_repeat 21 45 0 1387 96 0 5 chr13 23145065 23145253 -96599645 - AluY SINE Alu -124 187 1 2239 148 5 8 chr13 23145253 23145631 -96599267 - L1MA4 LINE L1 -246 6054 5678 620 184 15 22 chr13 23145684 23145820 -96599078 + Ricksha DNA DNA 1 135 -1911 2207 177 33 5 chr13 23145872 23146239 -96598659 + Ricksha DNA DNA 307 683 -1363 259 258 103 21 chr13 23146166 23146263 -96598635 + MLT2D LTR ERVL 321 425 -128 * 2096 138 41 141 chr13 23146262 23146524 -96598374 + Ricksha DNA DNA 2641 2928 -323 2032 113 10 3 chr13 23146524 23146825 -96598073 - AluSq SINE Alu -10 303 1 2096 138 41 141 chr13 23146825 23146908 -96597990 + Ricksha DNA DNA 2928 3018 -233 2315 66 0 3 chr13 23146908 23147210 -96597688 - AluY SINE Alu -10 301 1 2096 138 41 141 chr13 23147210 23147401 -96597497 + Ricksha DNA DNA 3018 3124 -127 4153 128 105 54 chr13 23147431 23148213 -96596685 - LTR12 LTR ERV1 0 826 5 1609 208 16 43 chr13 23148246 23148684 -96596214 + pTR5 LTR ERV1 802 1227 -1211 4797 111 25 98 chr13 23148712 23149599 -96595299 + LTR12 LTR ERV1 5 826 0 384 220 189 8 chr13 23150267 23150399 -96594499 + L2 LINE L2 3115 3270 -43 1453 148 38 6 chr13 23150404 23150840 -96594058 + LTR54 LTR ERV1 1 510 0 243 173 0 0 chr13 23150871 23150923 -96593975 + GA-rich Low_complexity Low_complexity 2 53 0 407 320 47 6 chr13 23151027 23151198 -96593700 + MIR SINE MIR 16 193 -63 360 353 59 13 chr13 23151838 23152076 -96592822 + MIR SINE MIR 6 254 -8 476 251 134 27 chr13 23153179 23153402 -96591496 + MLT1J1 LTR MaLR 189 435 -11 1338 188 112 65 chr13 23153528 23153958 -96590940 + LTR7 LTR ERV1 1 450 0 2252 99 0 3 chr13 23154083 23154397 -96590501 - AluSq SINE Alu 0 313 1 293 283 41 69 chr13 23155203 23155348 -96589550 - MIR3 SINE MIR -28 180 40 237 266 31 16 chr13 23155453 23155517 -96589381 + MIR SINE MIR 89 153 -109 3937 113 4 11 chr13 23156151 23156478 -96588420 + MER41A LTR ERV1 1 324 -230 2182 107 0 0 chr13 23156478 23156776 -96588122 + AluSg SINE Alu 1 298 -12 3937 113 4 11 chr13 23156776 23157006 -96587892 + MER41A LTR ERV1 324 554 0 548 254 55 55 chr13 23157085 23157286 -96587612 + MIR SINE MIR 48 248 -14 297 252 179 0 chr13 23157449 23157572 -96587326 - MIR SINE MIR -71 191 47 685 272 44 44 chr13 23157750 23158000 -96586898 - MIR SINE MIR -12 250 1 420 227 144 57 chr13 23158238 23158432 -96586466 + L1MEd LINE L1 3 213 -5906 243 265 108 12 chr13 23158603 23158686 -96586212 + L1MEd LINE L1 464 554 -5565 801 183 0 21 chr13 23158688 23158830 -96586068 - FLAM_C SINE Alu -3 140 2 366 266 9 0 chr13 23158919 23159028 -96585870 + L1MEd LINE L1 671 780 -5339 336 265 204 6 chr13 23159062 23159224 -96585674 + L1MEd LINE L1 1064 1257 -4862 2313 71 0 37 chr13 23159243 23159566 -96585332 - AluY SINE Alu 0 311 1 1892 135 30 0 chr13 23159731 23160027 -96584871 + AluSq SINE Alu 9 313 0 780 149 0 0 chr13 23160058 23160179 -96584719 + FLAM_C SINE Alu 10 130 -13 1778 173 0 3 chr13 23160860 23161166 -96583732 - AluJb SINE Alu -7 305 1 805 127 16 0 chr13 23161265 23161391 -96583507 - FLAM_C SINE Alu -4 139 12 2072 34 52 4 chr13 23162334 23162647 -96582251 + AluY SINE Alu 1 326 0 1532 98 9 0 chr13 23163637 23163851 -96581047 - MER4E LTR ERV1 0 766 551 313 44 0 22 chr13 23163846 23163891 -96581007 - MER4E LTR ERV1 -735 44 1 * 1548 191 65 9 chr13 23164475 23164800 -96580098 - MER61A LTR ERV1 0 343 1 2443 61 3 13 chr13 23164890 23165203 -96579695 + AluY SINE Alu 1 310 -1 1900 108 14 21 chr13 23165331 23165617 -96579281 - MER61A-int LTR ERV1 -108 6650 6367 8673 126 55 38 chr13 23165717 23165896 -96579002 - MER61A-int LTR ERV1 -761 5997 5823 2088 122 3 0 chr13 23165896 23166192 -96578706 + AluSx SINE Alu 1 297 -15 8673 126 55 38 chr13 23166192 23167531 -96577367 - MER61A-int LTR ERV1 -935 5823 4452 3639 128 44 9 chr13 23167533 23168096 -96576802 - MER61A-int LTR ERV1 -2673 4085 3503 4133 117 73 22 chr13 23168133 23168938 -96575960 - MER61A-int LTR ERV1 -3666 3092 2247 3920 95 4 2 chr13 23168938 23169456 -96575442 + MER41A LTR ERV1 1 519 -35 1585 146 0 24 chr13 23169456 23169710 -96575188 - AluJb SINE Alu -58 254 7 403 224 0 12 chr13 23169717 23169802 -96575096 - L1ME2 LINE L1 -62 6102 6019 565 158 20 20 chr13 23169910 23170062 -96574836 - L1M4 LINE L1 -3183 2963 2812 309 275 180 35 chr13 23170166 23170533 -96574365 - L1M4 LINE L1 -2002 4144 3725 1764 131 6 70 chr13 23170684 23170997 -96573901 - AluJb SINE Alu -18 294 2 6929 65 33 0 chr13 23171041 23171909 -96572989 + MER11D LTR ERVK 1 897 0 509 309 16 3 chr13 23172484 23172676 -96572222 - L1MC4a LINE L1 -332 5910 5713 243 0 0 0 chr13 23173222 23173249 -96571649 + (ATG)n Simple_repeat Simple_repeat 1 27 0 2119 98 16 10 chr13 23173478 23173783 -96571115 + AluSx SINE Alu 1 307 -5 234 210 12 25 chr13 23174593 23174674 -96570224 + CT-rich Low_complexity Low_complexity 1 80 0 294 208 73 10 chr13 23174939 23175035 -96569863 - L1ME4a LINE L1 0 6121 6020 524 265 57 29 chr13 23175108 23175353 -96569545 + MLT1J1 LTR MaLR 45 296 -150 2070 124 3 13 chr13 23175427 23175741 -96569157 + AluSx SINE Alu 1 311 -1 800 163 0 0 chr13 23177979 23178102 -96566796 - FLAM_C SINE Alu -8 125 3 1324 168 71 4 chr13 23178814 23179082 -96565816 + AluJo SINE Alu 19 304 -8 625 281 46 12 chr13 23179105 23179433 -96565465 + L1M4 LINE L1 2211 2549 -3597 2495 203 22 42 chr13 23179521 23180112 -96564786 + MER119 DNA MER1_type 5 583 0 641 119 8 42 chr13 23180161 23180279 -96564619 + FLAM_C SINE Alu 30 143 0 1045 139 11 37 chr13 23180293 23180480 -96564418 + AluJb SINE Alu 127 308 -4 400 243 64 125 chr13 23180485 23180537 -96564361 + L1M4 LINE L1 2678 2732 -3414 2320 63 37 0 chr13 23180537 23180837 -96564061 + AluY SINE Alu 1 311 0 400 243 64 125 chr13 23180837 23181080 -96563818 + L1M4 LINE L1 2732 2955 -3191 2217 141 60 0 chr13 23181082 23181464 -96563434 - L1PA16 LINE L1 0 6166 5762 314 109 0 0 chr13 23181474 23181520 -96563378 + L1P4 LINE L1 5755 5800 -366 423 245 78 91 chr13 23181531 23181800 -96563098 + L1M4 LINE L1 2945 3205 -2941 1890 155 0 0 chr13 23181800 23182110 -96562788 + AluSx SINE Alu 1 310 -2 423 245 78 91 chr13 23182110 23182354 -96562544 + L1M4 LINE L1 3205 3451 -2695 3508 179 42 23 chr13 23182404 23183140 -96561758 + L1MC3 LINE L1 7015 7764 -21 23 54 0 0 chr13 23183247 23183284 -96561614 + AT_rich Low_complexity Low_complexity 1 37 0 1833 152 0 3 chr13 23183294 23183591 -96561307 + AluJb SINE Alu 1 296 -16 2178 78 0 3 chr13 23183593 23183941 -96560957 + AluY SINE Alu 1 347 0 724 285 81 4 chr13 23183941 23184201 -96560697 + L1M4 LINE L1 3950 4229 -1917 22 35 0 0 chr13 23185075 23185104 -96559794 + AT_rich Low_complexity Low_complexity 1 29 0 2862 152 30 4 chr13 23185420 23185921 -96558977 - L1MA4 LINE L1 -11 6289 5776 308 234 16 0 chr13 23185952 23186016 -96558882 - L1MC4 LINE L1 -1339 6703 6639 2517 30 0 7 chr13 23186019 23186321 -96558577 - AluY SINE Alu -11 300 1 3270 125 29 5 chr13 23186321 23186959 -96557939 - L1M2 LINE L1 -514 5786 5127 342 297 25 34 chr13 23187584 23187702 -96557196 + MIR SINE MIR 24 140 -68 1061 257 86 24 chr13 23187717 23188091 -96556807 - MLT2C1 LTR ERVL 0 397 1 401 327 47 45 chr13 23188241 23188666 -96556232 - L1ME4a LINE L1 -173 5948 5523 875 172 105 62 chr13 23188797 23188924 -96555974 + Tigger3(Golem) DNA MER2_type 1 142 -2887 2424 54 3 0 chr13 23188924 23189220 -96555678 + AluY SINE Alu 2 298 -13 875 172 105 62 chr13 23189220 23189301 -96555597 + Tigger3(Golem) DNA MER2_type 142 218 -2811 * 3747 135 66 2 chr13 23189276 23189416 -96555482 + Tigger3(Golem) DNA MER2_type 2354 2484 -545 575 242 0 8 chr13 23189416 23189540 -96555358 + FLAM_A SINE Alu 1 123 -10 3747 135 66 2 chr13 23189540 23190034 -96554864 + Tigger3(Golem) DNA MER2_type 2484 3029 0 1685 127 4 12 chr13 23190216 23190475 -96554423 - Tigger2 DNA MER2_type 0 2718 2462 4131 142 53 30 chr13 23190512 23190815 -96554083 - Tigger2 DNA MER2_type -1946 772 477 2373 51 3 0 chr13 23190815 23191107 -96553791 - AluY SINE Alu -18 293 1 4131 142 53 30 chr13 23191107 23191558 -96553340 - Tigger2 DNA MER2_type -2241 477 1 1651 180 81 33 chr13 23192753 23193148 -96551750 - MLT2D LTR ERVL 0 414 1 2169 107 0 0 chr13 23194349 23194647 -96550251 + AluSg SINE Alu 1 298 -12 357 225 179 26 chr13 23195228 23195379 -96549519 - MER5B DNA MER1_type -4 174 1 199 257 40 99 chr13 23195401 23195502 -96549396 - MIR SINE MIR -84 124 30 245 304 26 61 chr13 23195617 23195732 -96549166 + L3b LINE CR1 1327 1437 -146 256 228 0 0 chr13 23196689 23196746 -96548152 + MER53 DNA DNA 1 57 -132 699 141 141 0 chr13 23196746 23196867 -96548031 + FRAM SINE Alu 23 160 -16 304 206 0 14 chr13 23196868 23196941 -96547957 - MER53 DNA DNA -37 152 81 2144 94 3 16 chr13 23198296 23198604 -96546294 + AluSq SINE Alu 2 305 -8 2253 78 0 0 chr13 23199828 23200121 -96544777 - AluSc SINE Alu -14 295 3 879 238 17 74 chr13 23200290 23200589 -96544309 + L1MA9 LINE L1 5987 6268 -44 1460 148 72 14 chr13 23202285 23202562 -96542336 + AluJb SINE Alu 5 297 -15 216 175 70 35 chr13 23202972 23203029 -96541869 + L3 LINE CR1 1519 1577 0 2388 54 0 19 chr13 23203504 23203821 -96541077 - AluY SINE Alu 0 311 1 534 188 10 0 chr13 23204440 23204541 -96540357 - MLT1G LTR MaLR 0 590 489 873 57 63 10 chr13 23206626 23206964 -96537934 + (TG)n Simple_repeat Simple_repeat 1 537 0 702 58 64 23 chr13 23206991 23207163 -96537735 + (TG)n Simple_repeat Simple_repeat 2 180 0 213 279 141 55 chr13 23207451 23207622 -96537276 + MIR3 SINE MIR 13 173 -35 2272 81 0 3 chr13 23207706 23208004 -96536894 - AluSq SINE Alu -16 297 1 361 227 160 34 chr13 23208219 23208338 -96536560 - MER63 DNA MER1_type -302 760 1 227 273 64 27 chr13 23208428 23208538 -96536360 + MIR SINE MIR 120 233 -29 297 156 180 3 chr13 23209333 23209457 -96535441 + MER20 DNA MER1_type 30 219 0 2386 96 0 3 chr13 23210903 23211204 -96533694 + AluSp SINE Alu 1 300 -13 2518 65 3 0 chr13 23211205 23211540 -96533358 + AluY SINE Alu 1 336 0 2193 102 3 14 chr13 23211925 23212220 -96532678 + AluSx SINE Alu 1 292 -20 565 262 83 35 chr13 23212654 23212883 -96532015 + MIR SINE MIR 7 246 -16 634 314 31 14 chr13 23213600 23213893 -96531005 + L1MB7 LINE L1 5863 6160 -24 218 103 0 26 chr13 23218062 23218101 -96526797 + (TCCC)n Simple_repeat Simple_repeat 4 41 0 233 373 105 19 chr13 23218266 23218580 -96526318 + L2 LINE L2 2222 2562 -752 246 32 0 0 chr13 23219597 23219628 -96525270 + (CA)n Simple_repeat Simple_repeat 1 31 0 2282 110 3 7 chr13 23220335 23220643 -96524255 - AluSq SINE Alu -6 307 1 189 279 49 0 chr13 23220875 23220936 -96523962 - MIR SINE MIR -43 219 156 2966 3 0 19 chr13 23221159 23221481 -96523417 + AluYb8 SINE Alu 1 316 -2 926 213 30 53 chr13 23221791 23222054 -96522844 + MIR SINE MIR 5 261 -1 2117 137 0 19 chr13 23222086 23222393 -96522505 + AluJo SINE Alu 1 301 -11 180 254 0 34 chr13 23222702 23222761 -96522137 + MIR SINE MIR 206 262 0 246 160 40 0 chr13 23222776 23222826 -96522072 - L1ME LINE L1 -452 5669 5618 280 279 27 82 chr13 23224987 23225134 -96519764 + L2 LINE L2 2925 3063 -209 2449 95 0 9 chr13 23225950 23226266 -96518632 + AluSq SINE Alu 1 313 0 199 208 19 19 chr13 23226945 23226998 -96517900 - L2 LINE L2 0 3313 3261 349 282 70 14 chr13 23227392 23227534 -96517364 - L2 LINE L2 0 3313 3164 2090 112 7 0 chr13 23227969 23228273 -96516625 - AluSx SINE Alu 0 308 3 706 65 56 28 chr13 23228291 23228399 -96516499 - HY1 scRNA scRNA -1 111 1 1088 156 13 69 chr13 23228399 23228622 -96516276 - AluJo SINE Alu -16 296 85 519 126 58 0 chr13 23228626 23228713 -96516185 - FRAM SINE Alu -59 117 26 1922 135 20 24 chr13 23228734 23229030 -96515868 - AluSx SINE Alu -17 295 1 219 36 0 0 chr13 23229727 23229755 -96515143 + (TTTTG)n Simple_repeat Simple_repeat 2 29 0 211 318 15 0 chr13 23230112 23230178 -96514720 - L2 LINE L2 -527 2787 2721 2117 134 3 13 chr13 23230398 23230705 -96514193 - AluJb SINE Alu -8 304 1 295 313 0 0 chr13 23232279 23232359 -96512539 - MER5A DNA MER1_type -100 89 10 1716 141 111 4 chr13 23232418 23232680 -96512218 - AluSx SINE Alu -19 293 4 227 35 0 0 chr13 23233298 23233327 -96511571 + MER5A DNA MER1_type 41 69 -120 614 200 21 14 chr13 23233331 23233471 -96511427 + FLAM_A SINE Alu 2 142 0 1057 118 11 6 chr13 23233536 23233714 -96511184 + (GAAA)n Simple_repeat Simple_repeat 2 180 0 409 218 11 0 chr13 23233716 23233803 -96511095 + MER5A DNA MER1_type 64 151 -38 451 269 69 40 chr13 23233824 23233999 -96510899 - MER97b DNA MER1_type? -859 194 15 856 158 0 0 chr13 23234855 23234982 -96509916 + FLAM_C SINE Alu 1 127 -16 309 282 77 46 chr13 23238487 23238682 -96506216 - L1ME4a LINE L1 -2 6119 5919 333 254 91 27 chr13 23238870 23238980 -96505918 - L1ME4a LINE L1 -474 5647 5531 2245 120 0 0 chr13 23239258 23239557 -96505341 - AluSx SINE Alu -13 299 1 918 129 0 0 chr13 23239781 23239905 -96504993 + FLAM_C SINE Alu 1 124 -19 227 337 36 0 chr13 23239914 23239997 -96504901 - L2 LINE L2 -561 2753 2668 2357 89 7 0 chr13 23240368 23240671 -96504227 + AluY SINE Alu 1 305 -6 181 353 173 0 chr13 23240680 23240819 -96504079 - MIR SINE MIR -3 259 97 861 232 150 15 chr13 23240880 23241220 -96503678 + LTR37A LTR ERV1 3 388 -38 180 125 0 0 chr13 23241654 23241686 -96503212 + (T)n Simple_repeat Simple_repeat 1 32 0 1869 136 48 42 chr13 23241759 23242069 -96502829 - AluJb SINE Alu 0 312 1 1518 187 63 20 chr13 23242642 23242989 -96501909 + L1PA16 LINE L1 5803 6164 -2 216 229 133 19 chr13 23243884 23243989 -96500909 + L2 LINE L2 3150 3266 -6 1898 174 3 3 chr13 23244085 23244389 -96500509 + AluJo SINE Alu 3 306 -6 201 74 0 0 chr13 23244391 23244418 -96500480 + (GGA)n Simple_repeat Simple_repeat 3 29 0 583 48 24 0 chr13 23244418 23244501 -96500397 + (GAAA)n Simple_repeat Simple_repeat 4 88 0 219 297 0 0 chr13 23244834 23244898 -96500000 + L2 LINE L2 1912 1975 -1339 628 250 48 18 chr13 23245065 23245293 -96499605 - MER90 LTR ERV1 0 575 341 1054 153 222 106 chr13 23245680 23245844 -96499054 - LTR52 LTR ERVL -5 416 273 2370 76 0 10 chr13 23245844 23246134 -96498764 + AluY SINE Alu 1 287 -24 1054 153 222 106 chr13 23246134 23246329 -96498569 - LTR52 LTR ERVL -148 273 15 2016 155 0 7 chr13 23246329 23246632 -96498266 + AluSx SINE Alu 1 301 -11 437 211 0 11 chr13 23246781 23246871 -96498027 - MIR SINE MIR -22 240 152 1731 145 25 22 chr13 23246882 23246940 -96497958 - MER2 DNA MER2_type -25 320 264 2118 123 10 0 chr13 23246940 23247233 -96497665 + AluSx SINE Alu 1 296 -16 1731 145 25 22 chr13 23247233 23247492 -96497406 - MER2 DNA MER2_type -81 264 2 520 303 26 33 chr13 23247493 23247645 -96497253 - MIR SINE MIR -111 151 1 246 278 157 28 chr13 23248316 23248424 -96496474 - MIR3 SINE MIR -36 172 66 506 151 21 11 chr13 23248618 23248711 -96496187 - MIR SINE MIR -98 164 71 1185 165 54 19 chr13 23248846 23249106 -96495792 - LTR54 LTR ERV1 0 510 242 1934 144 7 3 chr13 23249122 23249421 -96495477 - AluSq SINE Alu -13 300 1 182 305 53 21 chr13 23250279 23250374 -96494524 - MER5A DNA MER1_type -67 122 25 628 157 0 0 chr13 23250693 23250808 -96494090 - FLAM_A SINE Alu 0 142 28 1849 113 16 12 chr13 23251342 23251599 -96493299 + AluSc SINE Alu 51 308 -1 246 276 61 31 chr13 23252016 23252114 -96492784 + MLT1G1 LTR MaLR 1 101 -494 2165 152 66 76 chr13 23252337 23252577 -96492321 + LTR54 LTR ERV1 1 242 -268 2376 93 3 3 chr13 23252577 23252878 -96492020 + AluSx SINE Alu 1 301 -11 2165 152 66 76 chr13 23252878 23253152 -96491746 + LTR54 LTR ERV1 242 510 0 506 151 21 11 chr13 23253287 23253380 -96491518 + MIR SINE MIR 71 164 -98 196 130 43 0 chr13 23255908 23255954 -96488944 + GA-rich Low_complexity Low_complexity 2 49 0 205 103 0 0 chr13 23261917 23261946 -96482952 + MIR SINE MIR 84 112 -96 2541 51 0 0 chr13 23261946 23262240 -96482658 - AluY SINE Alu -17 294 1 409 131 48 7 chr13 23262988 23263133 -96481765 + (TA)n Simple_repeat Simple_repeat 1 151 0 40 0 0 0 chr13 23263147 23263187 -96481711 + AT_rich Low_complexity Low_complexity 1 40 0 1972 110 3 28 chr13 23263394 23263708 -96481190 - AluSq SINE Alu 0 309 3 2542 59 0 3 chr13 23263845 23264148 -96480750 + AluY SINE Alu 1 302 -9 323 190 36 51 chr13 23264627 23264820 -96480078 + L1ME2 LINE L1 5312 5495 -685 890 240 61 51 chr13 23264887 23265199 -96479699 + L1MEd LINE L1 401 715 -5404 * 939 247 29 14 chr13 23265192 23265467 -96479431 + L1MEd LINE L1 979 1257 -4862 315 291 56 53 chr13 23265512 23265832 -96479066 + L1MEd LINE L1 1336 1656 -4473 272 344 176 0 chr13 23265974 23266099 -96478799 - L2 LINE L2 -299 2973 2827 1573 117 46 4 chr13 23266099 23266338 -96478560 + L1PA13 LINE L1 5321 5569 -596 4958 56 13 20 chr13 23266338 23267370 -96477528 - MER11A LTR ERVK 0 1266 6 4140 86 59 3 chr13 23267370 23267942 -96476956 + L1PA13 LINE L1 5560 6163 0 987 241 87 78 chr13 23267942 23268231 -96476667 + L1ME2 LINE L1 5737 6022 -142 2349 79 0 0 chr13 23268231 23268522 -96476376 - AluY SINE Alu -20 291 1 987 241 87 78 chr13 23268522 23268539 -96476359 + L1ME2 LINE L1 6022 6037 -127 1800 144 0 0 chr13 23268539 23268789 -96476109 - AluSq SINE Alu -63 250 1 987 241 87 78 chr13 23268789 23268905 -96475993 + L1ME2 LINE L1 6037 6164 0 373 181 150 8 chr13 23268918 23269051 -96475847 + L1MC5 LINE L1 7773 7924 -37 357 248 0 29 chr13 23269163 23269268 -96475630 + L1ME3A LINE L1 6068 6169 -1 764 219 6 37 chr13 23269738 23269902 -96474996 - FRAM SINE Alu -3 163 5 678 191 28 14 chr13 23269910 23270051 -96474847 - MER5B DNA MER1_type -35 143 1 1928 115 0 0 chr13 23270316 23270569 -96474329 + AluSg SINE Alu 46 298 -12 2272 79 0 36 chr13 23270631 23270936 -96473962 + AluY SINE Alu 1 294 -17 209 292 9 53 chr13 23271204 23271317 -96473581 + MIR SINE MIR 4 111 -97 1861 242 120 2 chr13 23271359 23271843 -96473055 + MLT1H LTR MaLR 9 549 0 1001 231 99 0 chr13 23272432 23272714 -96472184 + MER33 DNA MER1_type 1 310 -14 723 19 88 6 chr13 23272835 23272994 -96471904 + (TA)n Simple_repeat Simple_repeat 1 172 0 22 35 0 0 chr13 23273938 23273967 -96470931 + GC_rich Low_complexity Low_complexity 1 29 0 2293 95 0 25 chr13 23275622 23275938 -96468960 - AluSx SINE Alu -4 308 1 1136 142 6 0 chr13 23276177 23276353 -96468545 - AluSg/x SINE Alu 0 312 136 195 42 0 0 chr13 23276623 23276647 -96468251 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 1900 150 0 7 chr13 23276650 23276936 -96467962 - AluSx SINE Alu -28 284 1 1308 214 23 8 chr13 23277184 23277450 -96467448 - L1MB8 LINE L1 -6 6172 5903 26 0 0 0 chr13 23278183 23278209 -96466689 + AT_rich Low_complexity Low_complexity 1 26 0 642 257 30 15 chr13 23279216 23279418 -96465480 + L1MA6 LINE L1 5746 5950 -350 490 213 9 0 chr13 23279419 23279527 -96465371 + L1MA4A LINE L1 5746 5854 -449 538 127 218 0 chr13 23279570 23279680 -96465218 - MER1B DNA MER1_type -163 134 1 364 282 117 70 chr13 23279680 23279893 -96465005 + L2 LINE L2 2673 2895 -419 270 116 47 0 chr13 23280638 23280702 -96464196 - Alu SINE Alu 0 306 241 2210 92 7 10 chr13 23280758 23281096 -96463802 + AluSx SINE Alu 1 312 0 1700 162 7 23 chr13 23281492 23281794 -96463104 + AluJb SINE Alu 2 298 -14 384 335 60 38 chr13 23281804 23282252 -96462646 - L1ME4a LINE L1 -143 5978 5521 2257 121 0 0 chr13 23284201 23284506 -96460392 - AluSx SINE Alu -7 305 1 1221 120 54 7 chr13 23284722 23285086 -96459812 + MSTA LTR MaLR 3 426 -2 2216 97 3 19 chr13 23285676 23285985 -96458913 + AluSc SINE Alu 1 304 -5 203 189 0 57 chr13 23286580 23286633 -96458265 + GA-rich Low_complexity Low_complexity 2 51 0 2089 77 14 7 chr13 23286739 23287025 -96457873 + AluSx SINE Alu 1 288 -24 2702 133 29 16 chr13 23287279 23287942 -96456956 + L1M2 LINE L1 4915 5584 -728 272 310 106 9 chr13 23288519 23288632 -96456266 - L2 LINE L2 -518 2796 2673 2073 122 6 6 chr13 23288964 23289276 -96455622 + AluSx SINE Alu 1 312 0 2397 58 0 48 chr13 23290082 23290394 -96454504 - AluY SINE Alu -14 297 1 324 0 0 0 chr13 23291766 23291802 -96453096 + (TG)n Simple_repeat Simple_repeat 2 37 0 2540 41 0 0 chr13 23291900 23292192 -96452706 - AluY SINE Alu -19 292 1 201 275 0 0 chr13 23292388 23292428 -96452470 - L2 LINE L2 -2918 396 357 1667 128 0 8 chr13 23292823 23293065 -96451833 + AluSx SINE Alu 1 240 -72 225 154 0 0 chr13 23293075 23293114 -96451784 + (TGAA)n Simple_repeat Simple_repeat 2 40 0 1062 127 33 0 chr13 23293953 23294103 -96450795 + AluJb SINE Alu 130 284 -28 2265 105 0 0 chr13 23294345 23294640 -96450258 + AluSc SINE Alu 1 295 -14 2243 95 0 7 chr13 23295165 23295461 -96449437 - AluSc SINE Alu -15 294 1 237 217 36 84 chr13 23295592 23295675 -96449223 + MIR SINE MIR 117 195 -67 22 0 0 0 chr13 23297002 23297024 -96447874 + AT_rich Low_complexity Low_complexity 1 22 0 345 218 39 70 chr13 23297815 23298022 -96446876 - L1ME LINE L1 -674 5496 5289 1127 226 16 69 chr13 23298026 23298344 -96446554 - AluJo SINE Alu -1 301 1 2178 83 7 0 chr13 23298614 23298892 -96446006 + AluSp SINE Alu 15 294 -19 201 94 0 0 chr13 23299303 23299335 -96445563 + (T)n Simple_repeat Simple_repeat 1 32 0 5114 130 38 19 chr13 23299421 23299483 -96445415 + L1PA16 LINE L1 5286 5345 -821 2404 76 0 7 chr13 23299483 23299787 -96445111 - AluY SINE Alu -9 302 1 5114 130 38 19 chr13 23299787 23300587 -96444311 + L1PA16 LINE L1 5345 6165 -1 23 33 0 0 chr13 23301024 23301054 -96443844 + AT_rich Low_complexity Low_complexity 1 30 0 2120 116 0 26 chr13 23301076 23301386 -96443512 - AluSx SINE Alu -10 302 1 21 0 0 0 chr13 23302109 23302130 -96442768 + AT_rich Low_complexity Low_complexity 1 21 0 1714 181 0 7 chr13 23302135 23302427 -96442471 - AluJo SINE Alu -22 290 1 254 348 31 10 chr13 23303308 23303408 -96441490 - MIR SINE MIR -99 109 7 607 280 21 74 chr13 23303514 23303757 -96441141 - MER102a DNA MER1_type -1 329 100 945 145 0 0 chr13 23304263 23304394 -96440504 + FLAM_C SINE Alu 2 132 -1 21 0 0 0 chr13 23304657 23304678 -96440220 + AT_rich Low_complexity Low_complexity 1 21 0 1903 163 0 3 chr13 23304856 23305150 -96439748 + AluJb SINE Alu 1 293 -19 225 286 130 52 chr13 23305393 23305547 -96439351 - L3 LINE CR1 -93 1484 1319 1959 150 6 25 chr13 23305784 23306098 -96438800 + AluSx SINE Alu 1 308 -4 308 143 0 79 chr13 23307291 23307354 -96437544 - MLT1C LTR MaLR -409 58 1 1349 178 23 100 chr13 23307358 23307493 -96437405 - MLT1C-int LTR MaLR -4 1367 1223 1949 142 0 14 chr13 23307493 23307788 -96437110 + AluSx SINE Alu 17 307 -5 1349 178 23 100 chr13 23307788 23308001 -96436897 - MLT1C-int LTR MaLR -148 1223 1046 1635 188 10 23 chr13 23308227 23308530 -96436368 + AluJo SINE Alu 1 299 -13 1516 177 0 71 chr13 23309064 23309375 -96435523 - AluJo SINE Alu -23 289 1 933 177 11 17 chr13 23309464 23309639 -96435259 + AluJo SINE Alu 35 208 -104 6702 222 102 29 chr13 23309640 23311586 -96433312 - L1 LINE L1 -846 5536 3734 2125 104 10 7 chr13 23311586 23311884 -96433014 - AluY SINE Alu -12 299 1 6702 222 102 29 chr13 23311884 23314533 -96430365 - L1 LINE L1 -2648 3734 526 289 200 0 0 chr13 23317282 23317327 -96427571 + MER3 DNA MER1_type 46 90 -119 * 866 115 7 47 chr13 23317288 23317436 -96427462 - MER3 DNA MER1_type -4 205 64 769 180 90 198 chr13 23317436 23317880 -96427018 - MSTD LTR MaLR 0 396 1 464 370 94 36 chr13 23317946 23318467 -96426431 - L2 LINE L2 -550 2764 2214 250 314 176 17 chr13 23319181 23319420 -96425478 - L2 LINE L2 -1093 2221 1945 253 286 101 25 chr13 23319737 23319856 -96425042 + L3 LINE CR1 476 603 -974 1698 181 7 3 chr13 23321270 23321558 -96423340 + AluJb SINE Alu 1 289 -23 1833 155 18 3 chr13 23321613 23321897 -96423001 - AluSx SINE Alu -24 288 1 26 0 0 0 chr13 23322128 23322154 -96422744 + AT_rich Low_complexity Low_complexity 1 26 0 285 266 75 0 chr13 23322303 23322397 -96422501 - L1MC4a LINE L1 -1869 5939 5839 27 29 0 0 chr13 23323195 23323229 -96421669 + AT_rich Low_complexity Low_complexity 1 34 0 4460 152 67 17 chr13 23324352 23324584 -96420314 + MER6 DNA MER2_type 1 220 -645 360 0 0 0 chr13 23324584 23324624 -96420274 + (TG)n Simple_repeat Simple_repeat 2 41 0 4460 152 67 17 chr13 23324624 23325214 -96419684 + MER6 DNA MER2_type 220 864 -1 500 262 166 0 chr13 23325439 23325626 -96419272 + MIR SINE MIR 26 243 -19 398 265 31 10 chr13 23327877 23327975 -96416923 + L2 LINE L2 3200 3299 -14 314 262 119 0 chr13 23328002 23328128 -96416770 + L1ME4a LINE L1 5978 6118 -3 1473 164 80 0 chr13 23328249 23328511 -96416387 + AluJb SINE Alu 11 293 -19 1870 108 4 4 chr13 23328853 23329122 -96415776 - AluSg1 SINE Alu 0 309 41 1472 161 37 37 chr13 23329647 23329945 -96414953 + AluJo SINE Alu 1 298 -14 1731 149 46 7 chr13 23330175 23330457 -96414441 - AluSg SINE Alu -12 298 6 1655 152 37 4 chr13 23330868 23331137 -96413761 + AluJo SINE Alu 1 278 -34 21 0 0 0 chr13 23331338 23331359 -96413539 + AT_rich Low_complexity Low_complexity 1 21 0 553 265 125 5 chr13 23331794 23331994 -96412904 - MIR SINE MIR -38 224 1 3283 147 46 18 chr13 23332079 23332758 -96412140 - L1MB4 LINE L1 -7 6671 5974 5579 50 81 1 chr13 23332770 23333514 -96411384 - L1PA7 LINE L1 -2 6152 5350 42764 33 23 1 chr13 23333526 23339549 -96405349 - L1PA3 LINE L1 0 6155 2 2349 77 0 3 chr13 23339565 23339862 -96405036 - AluY SINE Alu -15 296 1 778 133 36 182 chr13 23339863 23340033 -96404865 - L1MB4 LINE L1 -709 5969 5845 1638 194 13 3 chr13 23340033 23340332 -96404566 - AluJo SINE Alu -6 306 5 778 133 36 182 chr13 23340332 23340439 -96404459 - L1MB4 LINE L1 -833 5845 5724 1913 171 65 36 chr13 23340440 23340511 -96404387 - Tigger2a DNA MER2_type -2274 434 367 1434 172 12 106 chr13 23340511 23340842 -96404056 - AluJo SINE Alu -2 300 1 1913 171 65 36 chr13 23340842 23341184 -96403714 - Tigger2a DNA MER2_type -2341 367 9 4063 185 43 138 chr13 23341191 23342309 -96402589 - L1MB4 LINE L1 -920 5724 4501 414 0 0 0 chr13 23342309 23342355 -96402543 + (TG)n Simple_repeat Simple_repeat 2 47 0 4063 185 43 138 chr13 23342355 23342763 -96402135 - L1MB4 LINE L1 -2143 4501 4355 1609 201 0 16 chr13 23342763 23343077 -96401821 - AluJb SINE Alu 0 312 4 4063 185 43 138 chr13 23343077 23343152 -96401746 - L1MB4 LINE L1 -2289 4355 4274 2096 169 26 3 chr13 23343152 23343501 -96401397 - MER73 LTR ERVL 0 644 288 * 2195 174 23 8 chr13 23343497 23343881 -96401017 - MER54A LTR ERVL -509 392 3 4758 218 51 21 chr13 23343882 23344317 -96400581 - L1MB4 LINE L1 -2367 4277 3856 2127 126 7 0 chr13 23344317 23344611 -96400287 + AluSx SINE Alu 1 296 -16 4758 218 51 21 chr13 23344611 23345878 -96399020 - L1MB4 LINE L1 -2788 3856 2521 2008 177 93 7 chr13 23345909 23346360 -96398538 - L1MB2 LINE L1 -1 6170 5681 * 3901 189 123 55 chr13 23346359 23346990 -96397908 - L1MB4 LINE L1 -4125 2521 1934 2280 103 3 3 chr13 23346990 23347302 -96397596 - AluSx SINE Alu 0 312 1 216 0 0 0 chr13 23347303 23347327 -96397571 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 1974 132 3 3 chr13 23347329 23347616 -96397282 - AluSx SINE Alu -25 287 1 3901 189 123 55 chr13 23347616 23347796 -96397102 - L1MB4 LINE L1 -4712 1934 1768 1920 208 47 13 chr13 23347796 23348248 -96396650 - MLT1C LTR MaLR 0 467 1 3901 189 123 55 chr13 23348248 23348678 -96396220 - L1MB4 LINE L1 -4878 1768 1189 3040 146 64 39 chr13 23348762 23349291 -96395607 - LTR9 LTR ERV1 -37 575 30 1973 143 7 0 chr13 23349291 23349598 -96395300 - AluSx SINE Alu -1 311 3 3040 146 64 39 chr13 23349598 23349629 -96395269 - LTR9 LTR ERV1 -582 30 1 508 207 107 0 chr13 23349798 23349938 -96394960 - L1M2 LINE L1 -4159 2690 2536 2094 118 0 0 chr13 23349973 23350252 -96394646 - AluSg SINE Alu -31 279 1 445 211 68 23 chr13 23350284 23350417 -96394481 - L1MB4 LINE L1 -5587 955 817 405 278 23 8 chr13 23350505 23350638 -96394260 - L1MB4 LINE L1 -5710 936 802 309 249 93 63 chr13 23350943 23351148 -96393750 - L1MB4 LINE L1 -6293 249 39 276 264 64 43 chr13 23351549 23351689 -96393209 + L1MC4 LINE L1 7190 7332 -710 255 256 65 87 chr13 23351795 23352099 -96392799 + L1MC4 LINE L1 7274 7677 -365 1945 128 11 3 chr13 23353377 23353659 -96391239 + AluSx SINE Alu 7 290 -22 2387 90 3 0 chr13 23353659 23353959 -96390939 + AluSp SINE Alu 1 301 -12 1062 118 0 20 chr13 23353959 23354112 -96390786 - AluSq/x SINE Alu -162 151 2 1100 155 98 136 chr13 23354335 23354400 -96390498 - MLT1A1 LTR MaLR 0 365 299 1955 5 0 0 chr13 23354400 23354612 -96390286 + AluYa5 SINE Alu 100 311 0 1100 155 98 136 chr13 23354612 23354914 -96389984 - MLT1A1 LTR MaLR -66 299 12 349 254 98 33 chr13 23355310 23355432 -96389466 - HAL1 LINE L1 -100 2407 2278 1360 182 102 15 chr13 23355702 23355966 -96388932 - AluJb SINE Alu -25 287 1 600 277 80 9 chr13 23355981 23356205 -96388693 - HAL1 LINE L1 -628 1879 1640 454 220 87 144 chr13 23356841 23357105 -96387793 - MIR SINE MIR -10 252 4 2189 107 0 10 chr13 23358038 23358337 -96386561 + AluSg SINE Alu 1 296 -14 22 0 0 0 chr13 23358890 23358912 -96385986 + AT_rich Low_complexity Low_complexity 1 22 0 808 245 76 8 chr13 23359383 23359620 -96385278 + MER46C DNA MER2_type 86 338 0 1849 164 0 10 chr13 23359626 23359925 -96384973 - AluJo SINE Alu -16 296 1 208 198 169 0 chr13 23360119 23360175 -96384723 - MIR SINE MIR -76 132 67 2025 118 3 37 chr13 23361003 23361326 -96383572 + AluSx SINE Alu 1 312 0 12979 191 32 29 chr13 23361300 23367724 -96377174 + L1PB1 LINE L1 104 6864 -3 2345 73 0 23 chr13 23368508 23368809 -96376089 + AluSx SINE Alu 1 294 -18 1826 122 11 8 chr13 23369578 23369841 -96375057 + AluSx SINE Alu 42 305 -7 2195 110 0 3 chr13 23370068 23370360 -96374538 + AluSg SINE Alu 1 291 -19 436 213 46 9 chr13 23370403 23370511 -96374387 - L1ME1 LINE L1 -6 6160 6049 25 0 0 0 chr13 23370804 23370829 -96374069 + AT_rich Low_complexity Low_complexity 1 25 0 1252 294 88 13 chr13 23370984 23371439 -96373459 - L2 LINE L2 0 3313 2825 22 0 0 0 chr13 23371937 23371959 -96372939 + AT_rich Low_complexity Low_complexity 1 22 0 727 189 0 0 chr13 23372778 23372900 -96371998 + FRAM SINE Alu 1 122 -54 384 265 179 0 chr13 23372903 23373054 -96371844 - L3 LINE CR1 -723 854 677 1331 98 113 0 chr13 23373432 23373636 -96371262 + MER30 DNA MER1_type 4 230 0 489 224 97 30 chr13 23373948 23374113 -96370785 - MIR SINE MIR -1 261 86 2278 119 3 0 chr13 23374165 23374476 -96370422 - AluSx SINE Alu 0 312 1 398 329 127 21 chr13 23374858 23375095 -96369803 - MIR SINE MIR 0 262 1 641 172 6 38 chr13 23375133 23375211 -96369687 - L1MB3 LINE L1 -12 6171 6099 2304 106 0 3 chr13 23375211 23375513 -96369385 + AluSx SINE Alu 1 301 -11 641 172 6 38 chr13 23375513 23375591 -96369307 - L1MB3 LINE L1 -84 6099 6020 23 33 0 0 chr13 23375593 23375623 -96369275 + AT_rich Low_complexity Low_complexity 1 30 0 694 218 0 0 chr13 23375875 23375999 -96368899 + FLAM_A SINE Alu 1 124 -9 289 329 7 20 chr13 23376075 23376169 -96368729 - MARNA DNA Mariner -179 407 314 1441 91 68 27 chr13 23376169 23376390 -96368508 - MER30 DNA MER1_type 0 230 1 289 329 7 20 chr13 23376390 23376441 -96368457 - MARNA DNA Mariner -272 314 264 383 301 0 32 chr13 23376722 23376845 -96368053 - L2 LINE L2 -5 3267 3149 2242 93 3 0 chr13 23377836 23378125 -96366773 - AluSp SINE Alu -23 290 1 2540 57 0 0 chr13 23378968 23379269 -96365629 - AluY SINE Alu -10 301 1 225 0 0 0 chr13 23379740 23379765 -96365133 + (ATTG)n Simple_repeat Simple_repeat 4 28 0 2082 125 0 0 chr13 23379765 23380045 -96364853 - AluSx SINE Alu -32 280 1 311 238 30 50 chr13 23381065 23381166 -96363732 + MIR SINE MIR 164 262 0 891 291 95 30 chr13 23381866 23382179 -96362719 - L1ME3 LINE L1 -211 5951 5660 2222 101 7 14 chr13 23382179 23382475 -96362423 + AluSg SINE Alu 1 294 -16 891 291 95 30 chr13 23382475 23382970 -96361928 - L1ME3 LINE L1 -502 5660 5054 2330 100 0 3 chr13 23382970 23383270 -96361628 + AluSg SINE Alu 1 299 -11 891 291 95 30 chr13 23383270 23383574 -96361324 - L1ME3 LINE L1 -1108 5054 4771 449 232 21 0 chr13 23384381 23384451 -96360447 - MER69 DNA AcHobo -2 2524 2457 1745 163 22 0 chr13 23384451 23384728 -96360170 + AluJb SINE Alu 1 283 -29 449 232 21 0 chr13 23384728 23384799 -96360099 - MER69 DNA AcHobo -69 2457 2380 298 183 157 166 chr13 23385163 23385398 -96359500 - MIR SINE MIR -24 238 6 24 0 0 0 chr13 23386436 23386460 -96358438 + AT_rich Low_complexity Low_complexity 1 24 0 327 276 163 44 chr13 23386628 23386831 -96358067 - MIR SINE MIR -1 261 35 1769 172 3 7 chr13 23387713 23388010 -96356888 - AluJb SINE Alu -16 296 1 21 36 0 0 chr13 23388053 23388081 -96356817 + AT_rich Low_complexity Low_complexity 1 28 0 34 42 0 0 chr13 23388245 23388293 -96356605 + AT_rich Low_complexity Low_complexity 1 48 0 1030 194 84 40 chr13 23388541 23388668 -96356230 - MLT1F LTR MaLR -13 529 409 1792 159 77 11 chr13 23388668 23389020 -96355878 - THE1C LTR MaLR 0 375 1 1030 194 84 40 chr13 23389020 23389165 -96355733 - MLT1F LTR MaLR -133 409 245 385 327 155 9 chr13 23390743 23391092 -96353806 - L2 LINE L2 -26 3287 2888 3293 178 98 14 chr13 23393111 23394029 -96350869 - L1MB8 LINE L1 0 6178 5195 560 219 19 0 chr13 23394048 23394153 -96350745 - FLAM_A SINE Alu -35 107 1 443 158 0 20 chr13 23394155 23394256 -96350642 - L1MB8 LINE L1 -944 5202 5104 2823 3 0 0 chr13 23395017 23395322 -96349576 + AluYa5 SINE Alu 1 305 -6 403 236 217 19 chr13 23395871 23396032 -96348866 + L2 LINE L2 3121 3313 0 837 230 177 38 chr13 23396238 23396590 -96348308 - MLT1F LTR MaLR -2 553 98 1714 177 3 29 chr13 23396590 23396763 -96348135 - AluJo SINE Alu -9 303 140 2407 70 0 19 chr13 23396763 23397075 -96347823 - AluY SINE Alu -5 306 1 1714 177 3 29 chr13 23397075 23397212 -96347686 - AluJo SINE Alu -172 140 1 837 230 177 38 chr13 23397212 23397326 -96347572 - MLT1F LTR MaLR -457 98 1 271 300 100 0 chr13 23397676 23397776 -96347122 - MIR SINE MIR -53 209 100 2086 131 14 0 chr13 23398165 23398462 -96346436 - AluSx SINE Alu -11 301 1 2238 104 3 0 chr13 23398462 23398759 -96346139 - AluSg SINE Alu -12 298 1 2263 93 30 3 chr13 23398787 23399088 -96345810 - AluSp SINE Alu -4 309 1 190 237 26 0 chr13 23399371 23399409 -96345489 - L2 LINE L2 -20 3252 3214 3483 105 58 27 chr13 23400264 23400884 -96344014 - L1MA4A LINE L1 -8 6295 5657 3587 176 41 25 chr13 23401201 23401243 -96343655 - L1MB3 LINE L1 -1 6182 6142 2254 84 7 10 chr13 23401243 23401540 -96343358 - AluSx SINE Alu -16 296 1 3587 176 41 25 chr13 23401540 23401884 -96343014 - L1MB3 LINE L1 -41 6142 5805 7728 117 56 5 chr13 23401884 23403121 -96341777 + HSMAR2 DNA Mariner 2 1301 -1 3587 176 41 25 chr13 23403121 23403561 -96341337 - L1MB3 LINE L1 -378 5805 5342 600 198 33 61 chr13 23403573 23403785 -96341113 - L1MB3 LINE L1 -920 5226 5021 331 251 160 76 chr13 23404702 23404977 -96339921 + MER102b DNA MER1_type 17 314 -27 1898 194 98 20 chr13 23405216 23405705 -96339193 - MLT2B3 LTR ERVL -27 527 1 1909 138 81 3 chr13 23406900 23407248 -96337650 - THE1C LTR MaLR 0 375 1 272 266 165 39 chr13 23407542 23407982 -96336916 - L1ME LINE L1 -519 5645 5127 2107 112 49 0 chr13 23407982 23408268 -96336630 - AluSx SINE Alu -12 300 1 272 266 165 39 chr13 23408268 23408324 -96336574 - L1ME LINE L1 -1037 5127 5079 384 218 34 0 chr13 23408413 23408560 -96336338 + (TA)n Simple_repeat Simple_repeat 2 153 0 252 32 0 0 chr13 23408582 23408613 -96336285 + AluSq/x SINE Alu 74 104 -199 23 33 0 0 chr13 23409385 23409415 -96335483 + AT_rich Low_complexity Low_complexity 1 30 0 2478 56 0 34 chr13 23409980 23410302 -96334596 - AluY SINE Alu 0 311 1 222 151 57 38 chr13 23410484 23410537 -96334361 + L2 LINE L2 3207 3260 -12 2098 137 3 0 chr13 23410775 23411075 -96333823 + AluSx SINE Alu 1 301 -11 2073 118 31 3 chr13 23411342 23411629 -96333269 - AluSp SINE Alu -18 295 1 509 203 32 57 chr13 23412402 23412525 -96332373 + FLAM_A SINE Alu 1 120 -13 2400 76 10 0 chr13 23413141 23413442 -96331456 - AluY SINE Alu -7 304 1 211 310 28 0 chr13 23413449 23413520 -96331378 + L2 LINE L2 3229 3301 -12 1792 148 13 23 chr13 23413646 23413949 -96330949 + AluSx SINE Alu 1 300 -12 215 316 146 24 chr13 23414229 23414435 -96330463 + L2 LINE L2 2127 2357 -957 924 276 117 23 chr13 23415398 23415826 -96329072 - MLT1L LTR MaLR -3 612 145 3303 183 35 13 chr13 23415842 23416466 -96328432 - LTR9B LTR ERV1 0 644 7 1337 161 7 14 chr13 23416475 23416725 -96328173 - HUERS-P3 LTR ERV1 -6 8913 7168 740 177 86 11 chr13 23417016 23417202 -96327696 - HUERS-P3 LTR ERV1 -537 4343 4144 3828 188 51 77 chr13 23417203 23418011 -96326887 - HUERS-P3 LTR ERV1 -1934 6985 6198 2634 39 0 3 chr13 23418011 23418320 -96326578 - AluY SINE Alu -3 308 1 3828 188 51 77 chr13 23418320 23418357 -96326541 - HUERS-P3 LTR ERV1 -2721 6198 6162 * 4258 125 8 8 chr13 23418342 23418960 -96325938 - HUERS-P3 LTR ERV1 -3342 5577 4960 789 221 36 0 chr13 23418971 23419111 -96325787 - HUERS-P3 LTR ERV1 -4236 4683 4539 * 1032 127 24 24 chr13 23419104 23419269 -96325629 - HUERS-P3 LTR ERV1 -5635 3284 3120 2328 270 107 38 chr13 23419269 23420600 -96324298 - L1MEc LINE L1 -4428 1968 546 410 323 0 23 chr13 23420600 23420733 -96324165 - L2 LINE L2 -920 2394 2265 * 639 274 39 10 chr13 23420730 23420938 -96323960 + L2 LINE L2 1902 2115 -1199 4452 271 110 38 chr13 23421053 23422335 -96322563 - L1ME LINE L1 -482 5688 4499 1745 162 3 26 chr13 23422335 23422638 -96322260 - AluJb SINE Alu -16 296 1 4452 271 110 38 chr13 23422638 23422878 -96322020 - L1ME LINE L1 -1671 4499 4278 405 0 0 0 chr13 23422878 23422923 -96321975 + (TG)n Simple_repeat Simple_repeat 2 46 0 4452 271 110 38 chr13 23422923 23422956 -96321942 - L1ME LINE L1 -1892 4278 4249 2097 129 10 6 chr13 23422956 23423267 -96321631 + AluSx SINE Alu 1 312 0 4452 271 110 38 chr13 23423267 23424622 -96320276 - L1ME LINE L1 -1921 4249 2565 694 304 36 24 chr13 23424831 23425163 -96319735 - L1M4 LINE L1 -1995 4151 3816 1880 154 22 3 chr13 23425234 23425546 -96319352 - L1PA16 LINE L1 -21 6145 5828 2437 92 0 0 chr13 23425546 23425852 -96319046 - AluSq SINE Alu -7 306 1 2166 116 3 0 chr13 23425855 23426166 -96318732 - AluSx SINE Alu 0 312 1 1720 182 51 22 chr13 23426167 23426580 -96318318 - L1 LINE L1 -2139 4007 3583 771 109 0 36 chr13 23426719 23426829 -96318069 - AluSg SINE Alu -176 134 29 10037 142 23 42 chr13 23426829 23427303 -96317595 - L1PA15-16 LINE L1 -3489 3360 2878 351 0 0 0 chr13 23427303 23427342 -96317556 + (TTTA)n Simple_repeat Simple_repeat 2 40 0 2031 131 4 0 chr13 23427342 23427616 -96317282 - AluSc SINE Alu -34 275 1 10037 142 23 42 chr13 23427616 23427892 -96317006 - L1PA15-16 LINE L1 -3970 2879 2599 10639 25 19 118 chr13 23427892 23429429 -96315469 + SVA Other Other 3 1386 0 10037 142 23 42 chr13 23429429 23430757 -96314141 - L1PA15-16 LINE L1 -4250 2599 1305 2494 166 15 0 chr13 23430763 23431167 -96313731 - L1PA15-16 LINE L1 -6437 412 3 335 338 117 25 chr13 23431168 23431485 -96313413 - L1M4 LINE L1 -2322 3824 3479 609 144 33 0 chr13 23431496 23431586 -96313312 + AluSg/x SINE Alu 201 293 -16 698 176 119 6 chr13 23431930 23432089 -96312809 + MER96B DNA MER1_type? 3 179 -238 514 268 0 8 chr13 23432613 23432736 -96312162 - MER112 DNA MER1_type 0 260 139 432 0 0 0 chr13 23432754 23432802 -96312096 + (TG)n Simple_repeat Simple_repeat 2 49 0 580 255 15 49 chr13 23432852 23433065 -96311833 + MIR3 SINE MIR 13 208 0 1981 118 0 11 chr13 23433124 23433403 -96311495 + AluSx SINE Alu 1 276 -36 207 0 0 0 chr13 23433410 23433433 -96311465 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 360 0 0 0 chr13 23434056 23434096 -96310802 + (TG)n Simple_repeat Simple_repeat 2 41 0 198 269 115 13 chr13 23434171 23434249 -96310649 - MIR SINE MIR -29 233 148 755 204 62 138 chr13 23434281 23434830 -96310068 - L1MC5 LINE L1 -50 7911 7405 478 239 39 23 chr13 23434830 23434960 -96309938 - MIR SINE MIR -42 220 89 216 0 0 0 chr13 23435238 23435262 -96309636 + (CAAAA)n Simple_repeat Simple_repeat 1 24 0 270 0 0 0 chr13 23436308 23436338 -96308560 + (TTTTG)n Simple_repeat Simple_repeat 2 31 0 2013 126 0 0 chr13 23436341 23436618 -96308280 - AluSx SINE Alu -25 287 11 232 337 20 0 chr13 23438381 23438479 -96306419 + L3b LINE CR1 1125 1224 -359 2161 121 26 10 chr13 23438699 23439006 -96305892 - AluSx SINE Alu 0 312 1 587 316 16 5 chr13 23439751 23439938 -96304960 - MER5A DNA MER1_type 0 189 1 198 239 209 0 chr13 23440291 23440358 -96304540 - L2 LINE L2 -1 3312 3232 244 261 153 9 chr13 23440723 23440834 -96304064 + MIR SINE MIR 81 207 -55 759 187 0 0 chr13 23441130 23441253 -96303645 - AluJb SINE Alu 0 312 190 888 198 210 24 chr13 23441255 23441412 -96303486 - AluSp SINE Alu -4 299 173 1460 127 5 9 chr13 23441412 23441632 -96303266 - AluSc SINE Alu -4 305 87 5837 129 47 17 chr13 23441634 23442575 -96302323 + LTR5 LTR ERVK 1 969 0 888 198 210 24 chr13 23442575 23442666 -96302232 - AluSp SINE Alu -130 173 1 2449 92 0 0 chr13 23443406 23443709 -96301189 + AluSc SINE Alu 1 303 -6 2138 125 10 0 chr13 23443761 23444057 -96300841 + AluSx SINE Alu 1 299 -13 207 0 0 0 chr13 23444062 23444085 -96300813 + (CA)n Simple_repeat Simple_repeat 2 24 0 922 116 0 0 chr13 23444707 23444828 -96300070 - FRAM SINE Alu -28 148 28 2943 183 42 34 chr13 23444828 23445441 -96299457 + MER54A LTR ERVL 284 901 0 891 67 117 0 chr13 23447163 23447283 -96297615 - MER85 DNA T2_type -2 137 4 1798 174 3 10 chr13 23448636 23448946 -96295952 - AluJb SINE Alu -4 308 1 12053 206 21 10 chr13 23450096 23453829 -96291069 - L1PA16 LINE L1 -9 6157 2348 2145 126 0 0 chr13 23453831 23454124 -96290774 + AluSg SINE Alu 1 293 -17 2220 130 0 0 chr13 23456984 23457291 -96287607 - AluSx SINE Alu -5 307 1 1691 210 36 0 chr13 23458732 23459061 -96285837 - MER7A DNA MER2_type -7 339 1 21 0 0 0 chr13 23459720 23459741 -96285157 + AT_rich Low_complexity Low_complexity 1 21 0 3333 125 32 51 chr13 23459758 23460348 -96284550 - LTR14B LTR ERVK -13 595 17 417 295 114 18 chr13 23460443 23460609 -96284289 - MER5A DNA MER1_type 0 189 8 239 368 0 11 chr13 23460644 23460731 -96284167 - MER5A DNA MER1_type -31 158 73 2471 176 55 16 chr13 23460869 23461359 -96283539 - LTR22 LTR ERVK 0 509 1 1744 170 0 14 chr13 23461492 23461781 -96283117 + AluJo SINE Alu 1 285 -27 2149 116 0 25 chr13 23461792 23462112 -96282786 + AluSq SINE Alu 1 312 -1 459 271 172 36 chr13 23463283 23463504 -96281394 + MIR SINE MIR 2 252 -10 243 225 231 31 chr13 23463670 23463830 -96281068 - Charlie7 DNA MER1_type 0 2612 2421 337 269 135 7 chr13 23464070 23464211 -96280687 - L1ME LINE L1 -379 5742 5584 789 169 8 0 chr13 23464230 23464354 -96280544 - FLAM_C SINE Alu -7 126 2 2168 123 0 3 chr13 23465094 23465395 -96279503 + AluSx SINE Alu 1 300 -12 1297 135 5 10 chr13 23466644 23466844 -96278054 - AluSg/x SINE Alu -30 280 82 185 352 77 40 chr13 23467320 23467567 -96277331 - L2 LINE L2 -912 2402 2147 843 215 15 80 chr13 23467692 23468017 -96276881 + L1M4 LINE L1 972 1275 -5267 5328 100 28 10 chr13 23468018 23468818 -96276080 + L1PA16 LINE L1 5351 6164 -2 2312 192 61 42 chr13 23468811 23468921 -96275977 + L1M4 LINE L1 1255 1361 -5285 * 1765 159 30 14 chr13 23468921 23469217 -96275681 + AluJo SINE Alu 7 307 -5 2312 192 61 42 chr13 23469217 23469757 -96275141 + L1M4 LINE L1 1361 1918 -4728 1738 177 14 0 chr13 23469760 23470042 -96274856 + AluJb SINE Alu 4 289 -23 2219 112 3 0 chr13 23470389 23470683 -96274215 + AluSp SINE Alu 1 295 -18 1834 137 3 27 chr13 23470862 23471154 -96273744 - LTR22A LTR ERVK 0 458 174 6746 103 9 3 chr13 23471154 23472083 -96272815 - HERVK22 LTR ERVK -3760 3077 2144 6071 132 20 2 chr13 23472083 23473000 -96271898 - HERVK22 LTR ERVK -5902 935 3 3105 121 4 11 chr13 23473002 23473457 -96271441 - LTR22A LTR ERVK 0 458 7 787 194 65 19 chr13 23473503 23473658 -96271240 - AluJo/FRAM SINE Alu -17 295 134 479 195 52 0 chr13 23473661 23473738 -96271160 - AluJ/FLAM SINE Alu -230 82 2 847 156 0 8 chr13 23473843 23473971 -96270927 + FLAM_C SINE Alu 2 128 -5 472 278 60 60 chr13 23474123 23474357 -96270541 - MIR SINE MIR -14 248 15 2532 53 0 22 chr13 23474987 23475305 -96269593 + AluY SINE Alu 1 311 0 223 218 23 35 chr13 23475802 23475889 -96269009 + A-rich Low_complexity Low_complexity 2 87 0 542 120 20 30 chr13 23476980 23477080 -96267818 - L1MA10 LINE L1 -1 6333 6235 252 208 0 0 chr13 23477557 23477610 -96267288 - L1ME3A LINE L1 -11 6159 6107 2129 209 43 9 chr13 23477646 23478092 -96266806 - MER65C LTR ERV1 0 461 1 307 255 0 0 chr13 23478106 23478192 -96266706 - L1ME3 LINE L1 -174 5996 5911 2167 124 0 19 chr13 23478193 23478500 -96266398 + AluSx SINE Alu 1 301 -11 3776 185 54 68 chr13 23478603 23479048 -96265850 - Charlie5 DNA MER1_type -846 1778 1328 1829 156 3 29 chr13 23479048 23479355 -96265543 + AluJb SINE Alu 1 299 -13 3776 185 54 68 chr13 23479355 23479402 -96265496 - Charlie5 DNA MER1_type -1296 1328 1282 1666 172 10 10 chr13 23479402 23479705 -96265193 + AluJb SINE Alu 3 305 -7 3776 185 54 68 chr13 23479705 23480206 -96264692 - Charlie5 DNA MER1_type -1342 1282 798 800 205 0 13 chr13 23480206 23480357 -96264541 + Tigger2a DNA MER2_type 1 149 -285 366 47 0 0 chr13 23480353 23480396 -96264502 - Tigger2 DNA MER2_type -263 2455 2413 * 1575 150 71 11 chr13 23480449 23480729 -96264169 + Tigger2 DNA MER2_type 2422 2718 0 3110 201 84 10 chr13 23480738 23481066 -96263832 - Charlie5 DNA MER1_type -1834 790 488 1728 168 118 28 chr13 23481066 23481429 -96263469 + MSTD LTR MaLR 1 396 0 3110 201 84 10 chr13 23481429 23481828 -96263070 - Charlie5 DNA MER1_type -2136 488 9 2181 83 7 13 chr13 23481851 23482151 -96262747 - AluY SINE Alu -13 298 1 2532 53 0 22 chr13 23482815 23483133 -96261765 - AluY SINE Alu 0 311 1 471 270 64 60 chr13 23483763 23483996 -96260902 + MIR SINE MIR 15 248 -14 847 156 0 8 chr13 23484148 23484276 -96260622 - FLAM_C SINE Alu -5 128 2 1791 163 3 29 chr13 23484381 23484687 -96260211 + AluJb SINE Alu 2 299 -13 1517 191 73 102 chr13 23484688 23484734 -96260164 - Charlie5 DNA MER1_type -1295 1329 1283 1666 172 10 10 chr13 23484734 23485037 -96259861 + AluJb SINE Alu 3 305 -7 1517 191 73 102 chr13 23485037 23485538 -96259360 - Charlie5 DNA MER1_type -1341 1283 798 800 205 0 13 chr13 23485538 23485689 -96259209 + Tigger2a DNA MER2_type 1 149 -285 366 47 0 0 chr13 23485685 23485728 -96259170 - Tigger2 DNA MER2_type -253 2465 2423 * 1552 150 71 11 chr13 23485781 23486061 -96258837 + Tigger2 DNA MER2_type 2422 2718 0 3049 202 84 11 chr13 23486070 23486398 -96258500 - Charlie5 DNA MER1_type -1834 790 487 1728 168 118 28 chr13 23486398 23486761 -96258137 + MSTD LTR MaLR 1 396 0 3049 202 84 11 chr13 23486761 23487161 -96257737 - Charlie5 DNA MER1_type -2137 487 9 2237 77 7 13 chr13 23487184 23487484 -96257414 - AluY SINE Alu -13 298 1 481 248 121 27 chr13 23487516 23487811 -96257087 - L1MC4a LINE L1 -1903 5905 5548 248 244 81 24 chr13 23487914 23488037 -96256861 - L1MC4a LINE L1 -2331 5477 5348 1518 240 271 25 chr13 23488202 23488622 -96256276 + L2 LINE L2 1548 1863 -1451 2185 85 21 4 chr13 23488622 23488931 -96255967 - AluSq SINE Alu 0 314 1 1518 240 271 25 chr13 23488931 23489239 -96255659 + L2 LINE L2 1863 2457 -857 257 212 106 97 chr13 23489222 23489335 -96255563 - L2 LINE L2 -2674 640 527 * 206 32 32 0 chr13 23489341 23489372 -96255526 + (TTAA)n Simple_repeat Simple_repeat 4 35 0 1984 139 3 7 chr13 23489372 23489661 -96255237 - AluSx SINE Alu -24 288 1 813 150 0 8 chr13 23489663 23489790 -96255108 - AluJb SINE Alu -16 296 171 380 261 369 11 chr13 23489798 23490158 -96254740 - L2 LINE L2 -2793 521 33 403 319 292 0 chr13 23490225 23490386 -96254512 + L2 LINE L2 2973 3086 -227 204 40 0 0 chr13 23490386 23490411 -96254487 + (TG)n Simple_repeat Simple_repeat 2 26 0 403 319 292 0 chr13 23490411 23490509 -96254389 + L2 LINE L2 3086 3308 -5 1015 144 6 35 chr13 23492735 23492909 -96251989 + AluJo SINE Alu 120 288 -24 204 242 22 132 chr13 23493399 23493490 -96251408 - L2 LINE L2 -5 3267 3187 193 303 110 19 chr13 23493481 23493636 -96251262 + L3 LINE CR1 1101 1269 -308 * 604 197 25 8 chr13 23493805 23493927 -96250971 - Charlie1 DNA MER1_type 0 2761 2638 2119 109 7 3 chr13 23493928 23494212 -96250686 + AluSx SINE Alu 1 285 -27 683 219 0 0 chr13 23494753 23494872 -96250026 - FLAM_A SINE Alu -10 123 5 2105 130 7 3 chr13 23494915 23495208 -96249690 - AluSx SINE Alu -18 294 1 706 251 51 122 chr13 23495300 23495826 -96249072 - L1MC4 LINE L1 -1 8041 7553 1523 137 76 54 chr13 23495836 23496136 -96248762 - AluSx SINE Alu 0 306 1 35 63 0 0 chr13 23496818 23496881 -96248017 + AT_rich Low_complexity Low_complexity 1 63 0 233 296 157 0 chr13 23499479 23499587 -96245311 - L1MC/D LINE L1 -1904 5904 5780 389 221 136 14 chr13 23499707 23499847 -96245051 - L1ME4a LINE L1 -6 6115 5959 1405 189 148 84 chr13 23500806 23501245 -96243653 - MLT1C LTR MaLR 0 467 1 251 180 0 33 chr13 23501297 23501358 -96243540 + MER46C DNA MER2_type 83 141 -197 692 254 35 22 chr13 23501573 23501801 -96243097 - L1M4c LINE L1 -6124 260 30 392 192 26 0 chr13 23501816 23501894 -96243004 + MER46C DNA MER2_type 256 335 -3 382 269 37 37 chr13 23502280 23502414 -96242484 - MIR SINE MIR -108 154 21 1987 151 3 0 chr13 23502437 23502742 -96242156 - AluJb SINE Alu -6 306 1 364 281 97 42 chr13 23502974 23503212 -96241686 - L1ME4a LINE L1 -2262 5546 5296 931 268 236 20 chr13 23503304 23503800 -96241098 + L2 LINE L2 2149 2536 -777 2130 80 23 47 chr13 23503800 23504099 -96240799 - AluSp SINE Alu -21 292 1 931 268 236 20 chr13 23504099 23504475 -96240423 + L2 LINE L2 2536 3215 -98 887 167 54 12 chr13 23504477 23504645 -96240253 - AluJo SINE Alu -17 295 121 291 307 0 0 chr13 23504645 23504720 -96240178 + L2 LINE L2 3236 3310 -3 409 234 103 0 chr13 23505481 23505626 -96239272 + L1M4 LINE L1 5021 5180 -966 517 218 84 101 chr13 23506027 23506256 -96238642 - L1MC5 LINE L1 -35 7926 7704 1875 132 7 7 chr13 23506256 23506536 -96238362 + AluSx SINE Alu 1 280 -32 517 218 84 101 chr13 23506536 23506673 -96238225 - L1MC5 LINE L1 -257 7704 7566 243 281 18 0 chr13 23506973 23507030 -96237868 - L2 LINE L2 0 3272 3215 359 224 109 90 chr13 23507030 23507186 -96237712 - L1MC/D LINE L1 -2098 5710 5552 1032 145 70 0 chr13 23507199 23507371 -96237527 - AluSg/x SINE Alu -11 301 118 529 250 30 43 chr13 23507904 23508068 -96236830 - MER3 DNA MER1_type 0 209 48 280 272 152 0 chr13 23508527 23508619 -96236279 - L2 LINE L2 -4 3268 3163 365 267 64 45 chr13 23508619 23508821 -96236077 - L1MC4 LINE L1 -965 7077 6872 2102 72 72 10 chr13 23508833 23509158 -96235740 - AluY SINE Alu 0 343 1 1136 185 37 8 chr13 23511856 23512099 -96232799 + L1MB3 LINE L1 5931 6180 -3 589 231 32 32 chr13 23512291 23512447 -96232451 - L2 LINE L2 -38 3275 3120 604 267 287 22 chr13 23512680 23513730 -96231168 - L2 LINE L2 -537 2777 1450 304 275 180 5 chr13 23514133 23514322 -96230576 - L1MC4 LINE L1 0 8042 7821 284 167 39 13 chr13 23514423 23514501 -96230397 - L2 LINE L2 -2464 850 771 946 170 71 11 chr13 23515386 23515568 -96229330 + MER46A DNA MER2_type 44 236 0 325 304 121 4 chr13 23515841 23516233 -96228665 - L1MC/D LINE L1 -592 5570 5127 698 225 0 0 chr13 23516503 23516632 -96228266 + Tigger1 DNA MER2_type 10 138 -2280 3917 96 19 13 chr13 23516644 23517167 -96227731 - MER1A DNA MER1_type -1 526 1 352 198 86 35 chr13 23517190 23517306 -96227592 - L1M4 LINE L1 -905 5241 5120 444 244 74 15 chr13 23517596 23517731 -96227167 + MIR SINE MIR 49 191 -71 241 229 43 29 chr13 23517970 23518040 -96226858 + MER116 DNA Mariner 1 71 -9 219 301 73 32 chr13 23518091 23518214 -96226684 + L2 LINE L2 2618 2745 -569 227 267 0 0 chr13 23518224 23518284 -96226614 + Charlie7 DNA MER1_type 38 97 -2515 21 36 0 0 chr13 23518725 23518753 -96226145 + AT_rich Low_complexity Low_complexity 1 28 0 562 203 13 51 chr13 23519724 23519882 -96225016 + L1MC5 LINE L1 7059 7210 -751 30 59 0 0 chr13 23521029 23521080 -96223818 + AT_rich Low_complexity Low_complexity 1 51 0 23 0 0 0 chr13 23522035 23522058 -96222840 + AT_rich Low_complexity Low_complexity 1 23 0 642 187 0 0 chr13 23522185 23522640 -96222258 + (TA)n Simple_repeat Simple_repeat 1 455 0 230 232 18 0 chr13 23522753 23522809 -96222089 + MLT1B LTR MaLR 334 390 0 204 97 0 0 chr13 23523229 23523260 -96221638 + (TG)n Simple_repeat Simple_repeat 2 32 0 2041 68 7 58 chr13 23523628 23523938 -96220960 + AluY SINE Alu 5 298 -13 317 324 14 0 chr13 23524367 23524488 -96220410 + L1ME LINE L1 321 445 -5625 435 248 101 0 chr13 23524535 23524644 -96220254 + L1ME LINE L1 2667 2786 -3294 717 248 85 30 chr13 23524646 23524977 -96219921 + L1MC4 LINE L1 7689 8037 -5 232 168 65 194 chr13 23525653 23525808 -96219090 + LTR67 LTR ERVL 46 180 -377 2755 176 53 4 chr13 23526001 23526528 -96218370 - L1MB5 LINE L1 -50 6124 5572 413 165 12 12 chr13 23526529 23526614 -96218284 + LTR67 LTR ERVL 471 555 -2 239 328 0 0 chr13 23526616 23526677 -96218221 - MIR SINE MIR -113 149 89 2623 52 3 3 chr13 23527096 23527406 -96217492 - AluY SINE Alu -1 310 1 3327 179 104 20 chr13 23528723 23529434 -96215464 - MER21A LTR ERV1 -160 771 1 287 257 29 0 chr13 23530291 23530361 -96214537 + GA-rich Low_complexity Low_complexity 2 73 0 21 0 0 0 chr13 23531160 23531181 -96213717 + AT_rich Low_complexity Low_complexity 1 21 0 4127 160 48 9 chr13 23531187 23532433 -96212465 - L1MA8 LINE L1 -274 6017 4723 312 221 26 13 chr13 23532921 23532998 -96211900 + MER116 DNA Mariner 3 80 0 320 256 80 89 chr13 23533292 23533424 -96211474 - L1MB5 LINE L1 -847 5299 5167 1966 142 3 7 chr13 23533424 23533720 -96211178 - AluJb SINE Alu -15 297 3 320 256 80 89 chr13 23533720 23533900 -96210998 - L1MB5 LINE L1 -979 5167 4990 704 186 32 0 chr13 23534029 23534153 -96210745 + AluJb SINE Alu 166 293 -19 1493 114 5 9 chr13 23534251 23534462 -96210436 - AluSg/x SINE Alu -17 293 84 2063 135 0 3 chr13 23534462 23534750 -96210148 - AluSg SINE Alu -23 287 1 1110 289 111 18 chr13 23534769 23535245 -96209653 + L1ME3 LINE L1 5094 5667 -495 2219 101 7 14 chr13 23535245 23535541 -96209357 - AluSg SINE Alu -16 294 1 1110 289 111 18 chr13 23535541 23535855 -96209043 + L1ME3 LINE L1 5667 5951 -211 1316 253 88 12 chr13 23537031 23537530 -96207368 - L1MB5 LINE L1 -2337 3809 3273 2140 104 10 7 chr13 23537530 23537828 -96207070 - AluY SINE Alu -12 299 1 859 159 8 0 chr13 23537833 23537965 -96206933 - FLAM_C SINE Alu -10 133 1 263 257 73 28 chr13 23537970 23538079 -96206819 - MLT1F LTR MaLR -428 114 1 264 300 100 0 chr13 23538429 23538529 -96206369 - MIR SINE MIR -53 209 100 1440 112 5 0 chr13 23538918 23539115 -96205783 - AluSg/x SINE Alu -11 299 102 2293 93 3 17 chr13 23541602 23541904 -96202994 + AluSx SINE Alu 1 298 -14 1069 202 99 4 chr13 23542040 23542273 -96202625 + MLT2B3 LTR ERVL 279 533 -21 425 251 160 76 chr13 23542506 23542781 -96202117 - MER102b DNA MER1_type -27 314 17 204 128 0 26 chr13 23593808 23593847 -96151051 + (CGG)n Simple_repeat Simple_repeat 3 40 0 24 32 0 0 chr13 23594076 23594107 -96150791 + GC_rich Low_complexity Low_complexity 1 31 0 22 0 0 0 chr13 23594453 23594475 -96150423 + GC_rich Low_complexity Low_complexity 1 22 0 200 188 0 0 chr13 23595904 23595936 -96148962 + polypyrimidine Low_complexity Low_complexity 1 32 0 201 39 0 0 chr13 23595941 23595967 -96148931 + (CAAAAA)n Simple_repeat Simple_repeat 4 29 0 505 161 39 8 chr13 23596393 23596523 -96148375 + GA-rich Low_complexity Low_complexity 1 134 0 382 36 36 0 chr13 23596588 23596644 -96148254 + (ATG)n Simple_repeat Simple_repeat 3 60 0 297 89 0 0 chr13 23597679 23597724 -96147174 + (TG)n Simple_repeat Simple_repeat 2 46 0 225 224 37 19 chr13 23598218 23598325 -96146573 + (TA)n Simple_repeat Simple_repeat 2 110 0 1787 167 17 7 chr13 23599465 23599856 -96145042 - AluSx SINE Alu 0 395 2 1158 192 41 50 chr13 23600972 23601289 -96143609 - MLT1C LTR MaLR -153 314 1 1481 214 18 9 chr13 23602822 23603149 -96141749 - MER70B LTR ERVL -248 330 1 538 268 137 38 chr13 23603974 23604056 -96140842 - MLT1J1 LTR MaLR -5 441 369 2001 199 3 8 chr13 23604056 23604423 -96140475 - MLT1A1 LTR MaLR 0 365 1 538 268 137 38 chr13 23604423 23604770 -96140128 - MLT1J1 LTR MaLR -77 369 1 269 346 98 13 chr13 23606851 23607004 -96137894 - L3 LINE CR1 -95 1482 1317 685 235 82 6 chr13 23607017 23607187 -96137711 - MIR SINE MIR -16 246 64 2079 158 0 0 chr13 23607215 23607525 -96137373 - AluSx SINE Alu -2 310 1 838 267 55 40 chr13 23607548 23608070 -96136828 - MLT1H1 LTR MaLR 0 555 10 472 298 295 50 chr13 23608105 23608853 -96136045 - L3 LINE CR1 -283 1294 316 1841 172 0 17 chr13 23608853 23609149 -96135749 - AluJo SINE Alu -21 291 1 472 298 295 50 chr13 23609149 23609240 -96135658 - L3 LINE CR1 -1261 316 249 1939 149 3 3 chr13 23610629 23610911 -96133987 + AluSx SINE Alu 1 282 -30 228 385 126 13 chr13 23610928 23611229 -96133669 + L3b LINE CR1 1241 1575 -8 1772 179 14 8 chr13 23611877 23612234 -96132664 + MLT1B LTR MaLR 24 382 -8 2192 56 4 4 chr13 23612403 23612670 -96132228 + AluY SINE Alu 39 305 -6 319 316 58 52 chr13 23613871 23614026 -96130872 + L2 LINE L2 3112 3267 -5 1533 116 5 5 chr13 23614158 23614373 -96130525 + AluSp SINE Alu 93 307 -6 3858 171 21 39 chr13 23614390 23615144 -96129754 + MER21B LTR ERV1 101 841 -22 32 0 0 23 chr13 23615338 23615366 -96129532 + AT_rich Low_complexity Low_complexity 1 29 -13 2802 25 0 10 chr13 23615366 23615680 -96129218 + AluY SINE Alu 1 311 0 32 0 0 23 chr13 23615680 23615694 -96129204 + AT_rich Low_complexity Low_complexity 29 42 0 * 184 354 135 5 chr13 23615693 23615885 -96129013 - L2 LINE L2 -480 2834 2618 521 244 60 30 chr13 23617280 23617448 -96127450 + MLT1K LTR MaLR 412 584 -4 192 277 50 34 chr13 23617510 23617629 -96127269 + L2 LINE L2 1360 1480 -1834 1761 174 0 19 chr13 23617830 23618147 -96126751 + AluJo SINE Alu 1 311 -1 426 253 69 90 chr13 23619112 23619345 -96125553 - MLT1K LTR MaLR -4 584 357 824 136 8 0 chr13 23619415 23619547 -96125351 + FLAM_C SINE Alu 1 133 0 28 48 0 0 chr13 23621596 23621638 -96123260 + AT_rich Low_complexity Low_complexity 1 42 0 435 226 61 0 chr13 23623856 23623971 -96120927 - MIR SINE MIR 0 262 141 224 276 0 0 chr13 23623992 23624050 -96120848 + CT-rich Low_complexity Low_complexity 2 59 0 2650 166 6 32 chr13 23624450 23624496 -96120402 - L1MB1 LINE L1 0 6168 6122 2301 100 7 3 chr13 23624496 23624795 -96120103 - AluSx SINE Alu -10 302 3 2650 166 6 32 chr13 23624795 23625254 -96119644 - L1MB1 LINE L1 -46 6122 5676 8830 156 18 39 chr13 23625452 23626212 -96118686 - L1MB1 LINE L1 -769 5377 4603 2179 110 21 0 chr13 23626212 23626502 -96118396 - AluSx SINE Alu -16 296 1 8830 156 18 39 chr13 23626502 23627453 -96117445 - L1MB1 LINE L1 -1543 4603 3701 322 143 16 16 chr13 23627605 23627668 -96117230 - AluS SINE Alu -237 63 1 920 264 60 23 chr13 23628483 23628846 -96116052 + L1ME2 LINE L1 5785 6158 -6 363 309 47 7 chr13 23629155 23629304 -96115594 - MIR SINE MIR -43 219 65 568 135 0 10 chr13 23629860 23629956 -96114942 - FRAM SINE Alu -11 165 71 488 230 0 7 chr13 23629958 23630110 -96114788 + (TG)n Simple_repeat Simple_repeat 2 152 0 477 304 47 16 chr13 23630438 23630629 -96114269 - MIR SINE MIR -1 261 65 258 274 266 0 chr13 23630839 23630952 -96113946 - L2 LINE L2 -4 3268 3126 830 283 94 11 chr13 23632243 23632444 -96112454 - L2 LINE L2 -4 3309 3126 288 0 0 0 chr13 23632444 23632476 -96112422 + (TG)n Simple_repeat Simple_repeat 2 33 0 830 283 94 11 chr13 23632476 23632634 -96112264 - L2 LINE L2 -187 3126 2920 2108 166 5 27 chr13 23632697 23632878 -96112020 + MLT1A1 LTR MaLR 1 171 -194 2660 108 14 0 chr13 23632878 23633248 -96111650 - THE1C LTR MaLR 0 375 1 2108 166 5 27 chr13 23633248 23633439 -96111459 + MLT1A1 LTR MaLR 171 365 0 228 389 87 0 chr13 23634524 23634650 -96110248 + L2 LINE L2 3136 3272 0 1321 226 129 12 chr13 23634701 23635103 -96109795 + LTR2 LTR ERV1 1 449 0 21 0 0 0 chr13 23636159 23636180 -96108718 + AT_rich Low_complexity Low_complexity 1 21 0 2324 98 3 0 chr13 23636330 23636625 -96108273 - AluSq SINE Alu -15 298 3 258 212 45 15 chr13 23636647 23636713 -96108185 + L2 LINE L2 3246 3313 0 297 0 0 0 chr13 23637092 23637125 -96107773 + (TG)n Simple_repeat Simple_repeat 2 34 0 2317 78 0 0 chr13 23637125 23637401 -96107497 - AluY SINE Alu -20 291 16 3468 179 48 8 chr13 23638392 23639045 -96105853 - LTR58 LTR ERV1 0 679 1 726 227 164 54 chr13 23639081 23639416 -96105482 + MER93b LTR ERV1 2 373 0 1154 189 129 63 chr13 23640910 23641196 -96103702 + AluJo SINE Alu 8 312 0 1374 146 5 5 chr13 23641427 23641639 -96103259 + AluSx SINE Alu 1 212 -100 2143 104 0 4 chr13 23641669 23641990 -96102908 + AluSc SINE Alu 1 320 0 183 261 109 11 chr13 23642128 23642220 -96102678 - MIR SINE MIR -70 192 92 284 280 100 13 chr13 23642540 23642690 -96102208 + L2 LINE L2 3111 3273 -40 295 170 0 4 chr13 23643030 23643088 -96101810 + FRAM/FAM SINE Alu 9 51 -124 10655 190 12 12 chr13 23643197 23644954 -96099944 - L1PB1 LINE L1 0 6151 4385 216 0 0 0 chr13 23644954 23644978 -96099920 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 10655 190 12 12 chr13 23644978 23646437 -96098461 - L1PB1 LINE L1 -1766 4385 2927 2252 92 7 26 chr13 23646438 23646743 -96098155 - AluSc SINE Alu -10 299 1 787 170 0 99 chr13 23647132 23647344 -96097554 - L1MA4 LINE L1 0 6300 6110 1549 190 0 32 chr13 23647555 23647839 -96097059 + AluJo SINE Alu 1 275 -37 189 0 0 0 chr13 23647842 23647863 -96097035 + (TC)n Simple_repeat Simple_repeat 2 22 0 195 184 0 0 chr13 23647863 23647901 -96096997 + (TA)n Simple_repeat Simple_repeat 2 39 0 228 67 0 0 chr13 23647901 23647931 -96096967 + (CA)n Simple_repeat Simple_repeat 2 31 0 210 351 18 9 chr13 23648213 23648324 -96096574 + L2 LINE L2 2948 3059 -213 2007 102 56 30 chr13 23648697 23649000 -96095898 + AluY SINE Alu 1 311 0 1870 153 13 3 chr13 23649037 23649344 -96095554 + AluJb SINE Alu 1 310 -2 2181 152 8 0 chr13 23649600 23649956 -96094942 - L1MA5A LINE L1 -40 6257 5899 1205 144 24 5 chr13 23649956 23650164 -96094734 - LTR49 LTR ERV1 -383 212 1 282 242 74 21 chr13 23650512 23650607 -96094291 + LTR16A1 LTR ERVL 179 278 -179 2484 100 73 36 chr13 23650643 23651054 -96093844 + MSTC LTR MaLR 3 428 0 1145 264 105 87 chr13 23652628 23653322 -96091576 - MER21B LTR ERV1 -149 714 8 183 139 0 0 chr13 23655586 23655622 -96089276 + (CTG)n Simple_repeat Simple_repeat 1 36 0 205 271 0 0 chr13 23656790 23656838 -96088060 - L2 LINE L2 -4 3268 3221 221 211 88 0 chr13 23657037 23657094 -96087804 - MIR SINE MIR -109 153 92 2762 242 49 73 chr13 23657556 23658975 -96085923 + L1M1 LINE L1 18 2332 -5233 870 184 0 0 chr13 23659309 23659450 -96085448 + FRAM SINE Alu 10 150 -26 387 0 0 0 chr13 23659477 23659520 -96085378 + (CA)n Simple_repeat Simple_repeat 2 44 0 186 43 0 0 chr13 23659519 23659542 -96085356 + (GA)n Simple_repeat Simple_repeat 2 24 0 * 305 264 107 8 chr13 23660559 23660680 -96084218 - MIR3 SINE MIR -18 190 58 813 145 34 101 chr13 23660797 23661004 -96083894 - MER34C LTR ERV1 -33 552 360 619 164 10 0 chr13 23662188 23662292 -96082606 + FLAM_C SINE Alu 1 105 -38 3354 137 29 18 chr13 23662292 23662840 -96082058 - MER41C LTR ERV1 0 554 1 275 189 0 19 chr13 23662847 23662900 -96081998 + MER34B LTR ERV1 514 565 0 2557 212 18 21 chr13 23663313 23663917 -96080981 + L1MB7 LINE L1 4448 5049 -1097 246 157 118 0 chr13 23663916 23663967 -96080931 - L1M4 LINE L1 -1021 5125 5069 * 2696 194 50 6 chr13 23663979 23664747 -96080151 + L1MB7 LINE L1 5069 5904 -280 * 5649 113 14 3 chr13 23664744 23665636 -96079262 + L1MA3 LINE L1 5186 6087 -218 200 216 21 31 chr13 23666103 23666200 -96078698 + (TA)n Simple_repeat Simple_repeat 2 97 0 2331 95 10 0 chr13 23666422 23666726 -96078172 + AluSg SINE Alu 1 307 -3 501 62 0 0 chr13 23669117 23669182 -96075716 + (TTCC)n Simple_repeat Simple_repeat 4 68 0 2364 83 3 26 chr13 23669184 23669497 -96075401 - AluY SINE Alu -5 306 1 2202 118 7 0 chr13 23669521 23669826 -96075072 - AluSx SINE Alu -5 307 1 360 257 208 20 chr13 23670467 23670669 -96074229 - L2 LINE L2 -526 2788 2549 554 197 171 0 chr13 23672401 23672553 -96072345 + MER45A DNA AcHobo 1 178 0 264 100 0 0 chr13 23672963 23673003 -96071895 + (T)n Simple_repeat Simple_repeat 1 40 0 1932 113 28 10 chr13 23673612 23673903 -96070995 - AluSx SINE Alu -16 296 1 562 248 9 0 chr13 23674226 23674335 -96070563 + MER81 DNA DNA 5 114 0 419 176 0 0 chr13 23674393 23674461 -96070437 + AluJ/FLAM SINE Alu 2 69 -243 348 318 85 31 chr13 23675977 23676106 -96068792 + L2 LINE L2 3137 3272 0 1103 165 0 6 chr13 23676270 23676446 -96068452 + AluJo SINE Alu 1 175 -137 3188 127 6 27 chr13 23676447 23676960 -96067938 + L1MC1 LINE L1 5375 5876 -457 21 36 0 0 chr13 23677511 23677539 -96067359 + AT_rich Low_complexity Low_complexity 1 28 0 2176 71 46 4 chr13 23677543 23677824 -96067074 - AluY SINE Alu -18 293 1 304 285 122 14 chr13 23677924 23678025 -96066873 + L1MC/D LINE L1 4076 4165 -1981 2035 214 13 5 chr13 23678025 23678418 -96066480 - MSTD LTR MaLR 0 396 1 304 285 122 14 chr13 23678418 23678537 -96066361 + L1MC/D LINE L1 4165 4320 -1826 2142 125 10 0 chr13 23678541 23678837 -96066061 + AluSx SINE Alu 1 299 -13 1860 287 95 34 chr13 23678944 23679478 -96065420 + L1M3c LINE L1 1046 1546 -4850 1939 170 0 0 chr13 23679478 23679767 -96065131 + AluJb SINE Alu 1 289 -23 1860 287 95 34 chr13 23679767 23679862 -96065036 + L1M3c LINE L1 1546 1634 -4762 2547 159 11 23 chr13 23679862 23680301 -96064597 - Tigger2a DNA MER2_type 0 434 1 1860 287 95 34 chr13 23680301 23680756 -96064142 + L1M3c LINE L1 1634 2060 -4336 2331 108 0 0 chr13 23680756 23681053 -96063845 - AluSx SINE Alu -15 297 1 1860 287 95 34 chr13 23681053 23681393 -96063505 + L1M3c LINE L1 2060 2519 -3877 5763 244 81 30 chr13 23681394 23681821 -96063077 + L1ME1 LINE L1 3100 3504 -2662 2262 90 0 50 chr13 23681821 23682142 -96062756 - AluSg SINE Alu -5 305 1 5763 244 81 30 chr13 23682142 23683214 -96061684 + L1ME1 LINE L1 3504 4519 -1647 2231 119 0 6 chr13 23683214 23683547 -96061351 + AluSg SINE Alu 1 310 0 5763 244 81 30 chr13 23683547 23684891 -96060007 + L1ME1 LINE L1 4519 6103 -63 2637 55 0 0 chr13 23684891 23685201 -96059697 - AluY SINE Alu -1 310 1 5763 244 81 30 chr13 23685201 23685269 -96059629 + L1ME1 LINE L1 6103 6166 0 750 292 97 39 chr13 23685357 23685843 -96059055 + LTR33 LTR ERVL 8 521 0 228 312 18 9 chr13 23685933 23686042 -96058856 + L1P LINE L1 4482 4591 -1555 247 286 98 31 chr13 23686216 23686440 -96058458 + L1MC/D LINE L1 4812 5050 -1096 1855 167 74 24 chr13 23686469 23686846 -96058052 - MSTD LTR MaLR 0 396 1 1136 195 80 58 chr13 23686869 23687182 -96057716 + MER2 DNA MER2_type 1 320 -25 1323 264 47 10 chr13 23687288 23687697 -96057201 + L1MC/D LINE L1 5270 5691 -747 362 245 64 107 chr13 23688314 23688547 -96056351 + MER65-int LTR ERV1 81 303 -4568 238 243 49 60 chr13 23688728 23688913 -96055985 - MER54A LTR ERVL -618 283 101 272 198 0 88 chr13 23688913 23689004 -96055894 + MER65-int LTR ERV1 656 738 -4133 1785 179 3 7 chr13 23690016 23690312 -96054586 + AluJo SINE Alu 1 295 -17 5134 112 11 3 chr13 23690425 23691178 -96053720 - L1PA13 LINE L1 0 6163 5405 1707 178 7 13 chr13 23692556 23692854 -96052044 + AluJo SINE Alu 1 296 -16 2153 102 0 7 chr13 23693998 23694307 -96050591 + AluSx SINE Alu 1 307 0 1125 168 0 5 chr13 23694318 23694508 -96050390 + L1PB4 LINE L1 5966 6154 -2 2143 100 42 0 chr13 23694899 23695188 -96049710 + AluSx SINE Alu 1 301 -11 6223 85 11 6 chr13 23695727 23696574 -96048324 - L1PA11 LINE L1 -1 6173 5323 1886 122 16 56 chr13 23697080 23697384 -96047514 + AluJb SINE Alu 1 292 -20 21 0 0 0 chr13 23697384 23697405 -96047493 + AT_rich Low_complexity Low_complexity 1 21 0 2051 131 0 10 chr13 23697999 23698305 -96046593 + AluSx SINE Alu 1 303 -9 2443 85 7 3 chr13 23698561 23698868 -96046030 + AluSq SINE Alu 1 308 -5 189 107 0 0 chr13 23700180 23700208 -96044690 + (GGAGAA)n Simple_repeat Simple_repeat 3 30 0 45 0 0 0 chr13 23700587 23700632 -96044266 + AT_rich Low_complexity Low_complexity 1 45 0 1920 116 49 0 chr13 23700641 23700908 -96043990 + AluSx SINE Alu 1 280 -32 204 97 0 0 chr13 23700908 23700939 -96043959 + (CAAT)n Simple_repeat Simple_repeat 4 34 0 243 222 0 0 chr13 23700988 23701042 -96043856 + L2 LINE L2 3213 3266 -6 2533 132 89 22 chr13 23701649 23702097 -96042801 + LTR64 LTR ERVK 1 478 -80 927 118 0 29 chr13 23702120 23702256 -96042642 - FLAM_C SINE Alu -1 132 1 1841 171 0 0 chr13 23702297 23702583 -96042315 - AluJb SINE Alu -26 286 1 9911 172 106 11 chr13 23702768 23705230 -96039668 + L1PBa LINE L1 647 3345 -3517 436 241 61 30 chr13 23705418 23705671 -96039227 + MLT1L LTR MaLR 312 611 -4 805 261 31 52 chr13 23706434 23706821 -96038077 - L1MC5 LINE L1 -36 7925 7547 1329 219 28 100 chr13 23706873 23707059 -96037839 - L1MC5 LINE L1 -729 7232 7034 2093 110 7 0 chr13 23707059 23707372 -96037526 + AluSx SINE Alu 1 315 0 1329 219 28 100 chr13 23707372 23707764 -96037134 - L1MC5 LINE L1 -927 7034 6695 349 275 53 8 chr13 23707904 23708035 -96036863 + MIR SINE MIR 67 203 -59 23 0 0 0 chr13 23708882 23708905 -96035993 + AT_rich Low_complexity Low_complexity 1 23 0 233 100 0 0 chr13 23709243 23709273 -96035625 - MLT2D LTR ERVL -5 510 481 1665 140 0 98 chr13 23709343 23709650 -96035248 + AluJb SINE Alu 1 277 -35 1693 148 98 0 chr13 23709681 23709999 -96034899 - MLT2D LTR ERVL -65 349 1 503 245 104 7 chr13 23710566 23710776 -96034122 + MLT1H LTR MaLR 1 281 -268 312 262 71 0 chr13 23710993 23711077 -96033821 + MLT1H LTR MaLR 466 555 0 2179 109 13 10 chr13 23711632 23711936 -96032962 + AluSx SINE Alu 1 305 -7 22 0 0 0 chr13 23712569 23712591 -96032307 + AT_rich Low_complexity Low_complexity 1 22 0 1752 149 10 7 chr13 23712631 23712933 -96031965 - L1MC1 LINE L1 -1 6332 6030 1348 153 48 34 chr13 23713079 23713373 -96031525 + L1MB7 LINE L1 5887 6184 0 516 243 181 35 chr13 23713932 23714158 -96030740 + MLT1L LTR MaLR 8 266 -349 2354 252 40 43 chr13 23714643 23715326 -96029572 - L1ME3 LINE L1 -41 6121 5441 2258 122 3 0 chr13 23715326 23715637 -96029261 - AluSx SINE Alu 0 312 1 2354 252 40 43 chr13 23715637 23716131 -96028767 - L1ME3 LINE L1 -721 5441 4947 1379 239 46 46 chr13 23716157 23716356 -96028542 - L1ME3 LINE L1 -1279 4867 4669 2344 110 0 0 chr13 23716356 23716666 -96028232 - AluSx SINE Alu -2 310 1 1379 239 46 46 chr13 23716666 23716964 -96027934 - L1ME3 LINE L1 -1476 4670 4370 1696 225 75 58 chr13 23717005 23717114 -96027784 - L1ME1 LINE L1 -5 6161 6055 1865 111 12 0 chr13 23717114 23717357 -96027541 + AluSx SINE Alu 38 283 -29 184 80 0 0 chr13 23717357 23717382 -96027516 + (CAAA)n Simple_repeat Simple_repeat 2 180 0 1696 225 75 58 chr13 23717382 23717857 -96027041 - L1ME1 LINE L1 -111 6055 5566 237 303 17 17 chr13 23717862 23717981 -96026917 - L1ME3 LINE L1 -1755 4391 4273 1256 162 81 0 chr13 23718245 23718479 -96026419 - AluSg SINE Alu -57 253 1 700 240 98 62 chr13 23720545 23720882 -96024016 + MLT1L LTR MaLR 1 349 -266 363 132 0 0 chr13 23721415 23721483 -96023415 + (TTCC)n Simple_repeat Simple_repeat 4 71 0 1562 168 81 0 chr13 23721500 23721785 -96023113 - AluJo SINE Alu -4 308 1 2158 100 0 0 chr13 23722244 23722533 -96022365 - AluSg SINE Alu -16 294 6 2079 74 14 18 chr13 23723423 23723708 -96021190 + AluY SINE Alu 1 284 -27 270 56 0 0 chr13 23724523 23724559 -96020339 + (TA)n Simple_repeat Simple_repeat 2 37 0 844 257 141 27 chr13 23725302 23725714 -96019184 + MLT1C LTR MaLR 1 459 -8 235 397 7 0 chr13 23725730 23725866 -96019032 + L2 LINE L2 2232 2368 -946 2312 92 0 0 chr13 23725915 23726219 -96018679 + AluSq SINE Alu 1 304 -9 2513 43 0 0 chr13 23726410 23726711 -96018187 + AluY SINE Alu 1 301 -10 391 165 70 52 chr13 23727005 23727120 -96017778 - L1PA16 LINE L1 0 6166 6050 1065 197 19 57 chr13 23727312 23727601 -96017297 + L1P5 LINE L1 5441 5724 -430 708 121 0 0 chr13 23727702 23727801 -96017097 - MLT1A1 LTR MaLR -2 363 265 598 89 89 0 chr13 23727801 23727891 -96017007 + MER4A LTR ERV1 1 98 -566 1712 139 14 75 chr13 23727891 23728259 -96016639 + MER4A LTR ERV1 261 664 0 1208 242 11 0 chr13 23728259 23728523 -96016375 - MLT1A1 LTR MaLR -97 268 2 894 302 114 16 chr13 23729054 23729538 -96015360 + L1MC4a LINE L1 5296 5826 -1982 * 2388 145 17 2 chr13 23729535 23729943 -96014955 + L1MB3 LINE L1 5725 6138 -45 1961 124 0 10 chr13 23729946 23730244 -96014654 + AluSx SINE Alu 1 295 -17 2029 105 7 0 chr13 23730743 23731028 -96013870 + AluSx SINE Alu 1 287 -25 382 216 27 99 chr13 23731752 23731863 -96013035 - MER20 DNA MER1_type -116 103 1 389 273 116 8 chr13 23732109 23732230 -96012668 - MIR SINE MIR -79 183 50 565 231 37 15 chr13 23733254 23733388 -96011510 - MIR SINE MIR -77 185 49 2305 58 3 0 chr13 23733655 23733946 -96010952 - AluY SINE Alu 0 311 20 261 0 0 0 chr13 23734672 23734701 -96010197 + (TG)n Simple_repeat Simple_repeat 2 30 0 2189 106 0 3 chr13 23734750 23735053 -96009845 + AluSx SINE Alu 1 302 -10 220 347 0 13 chr13 23735077 23735152 -96009746 - L2 LINE L2 -36 3236 3163 211 196 0 39 chr13 23735179 23735230 -96009668 + (TATATG)n Simple_repeat Simple_repeat 6 54 0 1455 167 0 4 chr13 23735601 23735852 -96009046 + AluSx SINE Alu 50 299 -13 1960 149 0 0 chr13 23736054 23736362 -96008536 - AluSx SINE Alu -4 308 1 700 282 25 0 chr13 23737775 23737938 -96006960 - MIR SINE MIR -49 213 47 186 322 17 43 chr13 23738838 23738892 -96006006 - L2 LINE L2 -38 3234 3180 2240 104 3 0 chr13 23738892 23739201 -96005697 - AluSp SINE Alu -3 310 1 186 322 17 43 chr13 23739201 23739261 -96005637 - L2 LINE L2 -92 3180 3123 283 267 91 3 chr13 23739363 23739467 -96005431 - Charlie8 DNA MER1_type -2290 127 2 25 31 0 0 chr13 23739634 23739666 -96005232 + AT_rich Low_complexity Low_complexity 1 32 0 289 113 0 29 chr13 23739666 23739731 -96005167 - Alu SINE Alu -19 283 247 1206 164 136 82 chr13 23739731 23739747 -96005151 - MSTD LTR MaLR -62 334 320 1886 190 64 11 chr13 23739747 23740121 -96004777 + MSTD LTR MaLR 3 396 0 1206 164 136 82 chr13 23740121 23740421 -96004477 - MSTD LTR MaLR -76 320 1 852 220 47 19 chr13 23740504 23740718 -96004180 + MIR SINE MIR 43 262 0 270 360 0 0 chr13 23741013 23741102 -96003796 - MER5A DNA MER1_type -83 106 18 218 274 68 27 chr13 23743403 23743476 -96001422 + MIR SINE MIR 127 202 -60 1972 103 0 62 chr13 23743504 23743825 -96001073 + AluSx SINE Alu 1 301 -11 298 350 13 38 chr13 23744263 23744420 -96000478 + MIR SINE MIR 50 202 -60 197 307 71 24 chr13 23744522 23744649 -96000249 + MIR SINE MIR 60 192 -70 972 165 6 6 chr13 23744839 23745015 -95999883 - FRAM SINE Alu 0 176 1 689 137 24 8 chr13 23746648 23746772 -95998126 + MER31B LTR ERV1 1 126 -340 * 718 133 147 7 chr13 23746749 23746899 -95997999 + MER31B LTR ERV1 243 413 -53 1970 153 80 28 chr13 23746909 23747293 -95997605 + MSTB1 LTR MaLR 7 410 -22 1680 95 4 9 chr13 23747293 23747524 -95997374 - MER30 DNA MER1_type 0 230 1 320 155 28 14 chr13 23747556 23747627 -95997271 + MER31B LTR ERV1 395 466 0 466 235 120 54 chr13 23747635 23748128 -95996770 - MLT1H1 LTR MaLR -29 566 4 1844 117 32 14 chr13 23748182 23748485 -95996413 + AluSx SINE Alu 5 312 0 510 198 18 0 chr13 23748587 23748698 -95996200 + L1MD3 LINE L1 6919 7031 -964 944 162 65 142 chr13 23748810 23749162 -95995736 + MER51C LTR ERV1 326 640 0 299 235 0 0 chr13 23749175 23749243 -95995655 + L1MC3 LINE L1 7029 7096 -689 325 265 31 10 chr13 23749244 23749342 -95995556 + MLT1F1 LTR MaLR 35 134 -433 2463 147 46 31 chr13 23749345 23749754 -95995144 + L1MC3 LINE L1 7205 7623 -162 2463 63 0 0 chr13 23749754 23750056 -95994842 + AluY SINE Alu 1 302 -9 2463 147 46 31 chr13 23750056 23750101 -95994797 + L1MC3 LINE L1 7623 7666 -119 1359 189 71 53 chr13 23750125 23750330 -95994568 - MER2 DNA MER2_type 0 344 129 1965 125 0 10 chr13 23750330 23750635 -95994263 + AluSx SINE Alu 11 312 0 1359 189 71 53 chr13 23750635 23750767 -95994131 - MER2 DNA MER2_type -215 129 1 2362 83 13 0 chr13 23804103 23804405 -95940493 + AluSq SINE Alu 2 307 -6 32 0 0 23 chr13 23806472 23806486 -95938412 + AT_rich Low_complexity Low_complexity 1 14 -28 1742 101 22 14 chr13 23806486 23806762 -95938136 - L1PB1 LINE L1 0 6151 5874 32 0 0 23 chr13 23806762 23806790 -95938108 + AT_rich Low_complexity Low_complexity 14 42 0 618 13 0 0 chr13 23806790 23806865 -95938033 - L1PA3 LINE L1 -4 6151 6077 335 87 48 164 chr13 23806865 23806929 -95937969 - L1PB1 LINE L1 -265 5886 5837 1801 117 59 38 chr13 23806929 23807219 -95937679 - AluSq SINE Alu -17 296 1 335 87 48 164 chr13 23807219 23807258 -95937640 - L1PB1 LINE L1 -314 5837 5795 342 67 0 0 chr13 23807259 23807304 -95937594 + (TA)n Simple_repeat Simple_repeat 2 46 0 219 69 0 0 chr13 23807306 23807335 -95937563 + (CA)n Simple_repeat Simple_repeat 1 29 0 245 182 18 0 chr13 23807444 23807499 -95937399 - L1ME LINE L1 -539 5582 5527 359 251 204 42 chr13 23807724 23807891 -95937007 + MIR SINE MIR 48 241 -21 543 322 94 5 chr13 23808527 23808729 -95936169 - MIR SINE MIR -12 250 31 606 246 104 38 chr13 23809635 23809846 -95935052 - MIR SINE MIR -21 241 17 2459 87 3 0 chr13 23809901 23810210 -95934688 + AluSp SINE Alu 1 310 -3 1596 110 200 0 chr13 23810404 23810704 -95934194 - MER46B DNA MER2_type -1 235 1 542 226 161 5 chr13 23810709 23810908 -95933990 - MLT1J LTR MaLR -246 265 36 390 219 85 37 chr13 23811023 23811187 -95933711 - L1MEd LINE L1 -5946 173 2 330 188 257 0 chr13 23811519 23811620 -95933278 + Charlie5 DNA MER1_type 1 127 -2485 * 924 231 89 0 chr13 23811617 23811916 -95932982 + Charlie5 DNA MER1_type 2234 2572 -52 676 207 8 8 chr13 23811916 23812037 -95932861 - FLAM_A SINE Alu -12 121 1 924 231 89 0 chr13 23812037 23812096 -95932802 + Charlie5 DNA MER1_type 2572 2624 0 657 289 92 9 chr13 23812773 23812991 -95931907 + MIR SINE MIR 26 261 -1 2826 164 68 83 chr13 23813450 23813590 -95931308 - L1MB7 LINE L1 -5 6179 6038 1588 132 8 0 chr13 23813590 23813825 -95931073 + AluSx SINE Alu 57 293 -19 1654 161 20 24 chr13 23813825 23814117 -95930781 - AluJo SINE Alu -21 291 1 2826 164 68 83 chr13 23814117 23814385 -95930513 - L1MB7 LINE L1 -145 6039 5769 2042 136 3 3 chr13 23814385 23814693 -95930205 - AluSx SINE Alu -1 311 4 2826 164 68 83 chr13 23814693 23815114 -95929784 - L1MB7 LINE L1 -415 5769 5360 676 293 64 69 chr13 23815153 23815251 -95929647 - L2 LINE L2 0 3313 3216 2050 149 0 0 chr13 23815251 23815559 -95929339 + AluJb SINE Alu 1 308 -4 676 293 64 69 chr13 23815559 23816057 -95928841 - L2 LINE L2 -97 3216 2621 1270 259 143 18 chr13 23816125 23816193 -95928705 - L2 LINE L2 -658 2656 2598 3131 161 9 33 chr13 23816193 23816637 -95928261 - MER41D LTR ERV1 0 557 129 2353 103 0 0 chr13 23816637 23816937 -95927961 - AluSx SINE Alu -12 300 1 3131 161 9 33 chr13 23816937 23817063 -95927835 - MER41D LTR ERV1 -428 129 1 1270 259 143 18 chr13 23817063 23817538 -95927360 - L2 LINE L2 -716 2598 2045 378 284 57 7 chr13 23817684 23817825 -95927073 + L1ME LINE L1 44 191 -5879 248 229 0 0 chr13 23817826 23817896 -95927002 + T-rich Low_complexity Low_complexity 1 70 0 1717 176 3 22 chr13 23817986 23818304 -95926594 + AluJb SINE Alu 1 312 0 1067 267 115 34 chr13 23818391 23818900 -95925998 + L1ME LINE L1 348 918 -5152 2217 92 3 0 chr13 23818900 23819183 -95925715 + AluSq SINE Alu 1 310 0 195 0 39 0 chr13 23819183 23819209 -95925689 + (TAAA)n Simple_repeat Simple_repeat 2 180 0 1067 267 115 34 chr13 23819209 23819315 -95925583 + L1ME LINE L1 918 1014 -5056 23 0 0 0 chr13 23819456 23819479 -95925419 + AT_rich Low_complexity Low_complexity 1 23 0 1416 269 77 32 chr13 23819860 23820702 -95924196 + L1ME LINE L1 988 1975 -4171 2407 90 7 0 chr13 23820702 23821003 -95923895 + AluSx SINE Alu 1 303 -9 1416 269 77 32 chr13 23821003 23821023 -95923875 + L1ME LINE L1 1975 1993 -4153 625 277 219 38 chr13 23821024 23821272 -95923626 - L2 LINE L2 -1782 1532 1330 2538 56 7 13 chr13 23821272 23821577 -95923321 - AluY SINE Alu -8 303 1 625 277 219 38 chr13 23821577 23821930 -95922968 - L2 LINE L2 -1984 1330 822 232 270 16 0 chr13 23821930 23821950 -95922948 + MER3 DNA MER1_type 27 47 -162 575 196 0 0 chr13 23821950 23822057 -95922841 - MER3 DNA MER1_type 0 209 103 2154 128 0 0 chr13 23822057 23822355 -95922543 - AluSq SINE Alu -14 299 2 503 262 40 0 chr13 23822781 23822930 -95921968 - MER112 DNA MER1_type -104 156 2 342 284 74 14 chr13 23822980 23823128 -95921770 - L1ME LINE L1 -616 5550 5394 1938 187 68 34 chr13 23823147 23823591 -95921307 + LTR2B LTR ERV1 32 490 0 436 244 78 125 chr13 23823593 23824083 -95920815 - L1ME LINE L1 -748 5398 4958 2078 119 3 0 chr13 23824083 23824411 -95920487 - AluSq SINE Alu 0 329 1 436 244 78 125 chr13 23824411 23824728 -95920170 - L1ME LINE L1 -1188 4958 4628 606 196 22 14 chr13 23824764 23824902 -95919996 - MER4C LTR ERV1 0 465 327 14696 48 2 0 chr13 23824903 23827530 -95917368 + L1PA5 LINE L1 3588 6216 0 631 278 14 43 chr13 23827545 23827653 -95917245 - L1ME LINE L1 -1842 4304 4194 2294 108 7 0 chr13 23827653 23827949 -95916949 + AluSp SINE Alu 1 298 -15 631 278 14 43 chr13 23827949 23828117 -95916781 - L1ME LINE L1 -1952 4194 4036 310 299 0 0 chr13 23828127 23828214 -95916684 - L1MC4 LINE L1 -1339 6703 6617 1908 130 17 23 chr13 23828214 23828513 -95916385 - AluSc SINE Alu -12 297 1 420 287 72 34 chr13 23828526 23828763 -95916135 - L1ME LINE L1 -2130 4016 3771 704 269 58 42 chr13 23828792 23829219 -95915679 - L1ME LINE L1 -2899 3247 2814 2230 117 0 0 chr13 23829759 23830059 -95914839 - AluSx SINE Alu -12 300 1 1302 191 41 32 chr13 23830059 23830404 -95914494 - L1M4 LINE L1 -1100 5046 4699 1123 241 119 17 chr13 23830535 23830879 -95914019 + MLT1G1 LTR MaLR 3 381 -214 2456 85 0 3 chr13 23831111 23831417 -95913481 + AluSc SINE Alu 1 305 -4 1842 176 0 0 chr13 23831717 23832006 -95912892 + AluJb SINE Alu 4 292 -20 410 310 54 47 chr13 23832082 23832340 -95912558 + L3b LINE CR1 1190 1449 -134 195 42 0 0 chr13 23833794 23833818 -95911080 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 691 116 0 0 chr13 23833822 23833917 -95910981 - AluSg/x SINE Alu -35 277 183 2304 93 7 0 chr13 23834017 23834318 -95910580 + AluSq SINE Alu 11 313 0 194 138 0 0 chr13 23834640 23834669 -95910229 + MIR SINE MIR 86 114 -94 513 136 0 0 chr13 23834693 23834796 -95910102 + (TG)n Simple_repeat Simple_repeat 1 103 0 25 75 0 0 chr13 23835285 23835338 -95909560 + GC_rich Low_complexity Low_complexity 1 53 0 219 175 0 35 chr13 23835626 23835683 -95909215 + (CGGGG)n Simple_repeat Simple_repeat 4 58 0 339 203 0 0 chr13 23836194 23836268 -95908630 + (CA)n Simple_repeat Simple_repeat 2 75 0 773 275 102 20 chr13 23836757 23837200 -95907698 - L2 LINE L2 -612 2702 2224 636 190 41 24 chr13 23837200 23837371 -95907527 + MER45A DNA AcHobo 1 174 -4 1008 244 81 21 chr13 23837395 23837830 -95907068 - L2 LINE L2 -1154 2160 1700 309 262 83 14 chr13 23837843 23838052 -95906846 - L2 LINE L2 -2761 553 240 355 230 110 10 chr13 23838536 23838636 -95906262 - L2 LINE L2 -13 3300 3191 1313 92 6 6 chr13 23838858 23839032 -95905866 - AluSc SINE Alu -126 183 10 253 295 103 0 chr13 23839227 23839305 -95905593 - MIR3 SINE MIR -15 193 108 1754 161 33 4 chr13 23840688 23840997 -95903901 + AluSx SINE Alu 1 317 0 1921 143 20 7 chr13 23841007 23841301 -95903597 + AluJo SINE Alu 1 298 -14 217 235 39 0 chr13 23843248 23843299 -95901599 - L2 LINE L2 -680 2634 2582 1240 197 55 3 chr13 23843555 23843845 -95901053 + MER33 DNA MER1_type 11 315 -9 211 272 80 74 chr13 23843890 23844052 -95900846 - MIR3 SINE MIR -11 197 35 4769 132 13 9 chr13 23845169 23845922 -95898976 - L1MC1 LINE L1 -246 6087 5332 2534 73 0 0 chr13 23845922 23846225 -95898673 - AluY SINE Alu -8 303 1 1770 88 0 0 chr13 23846225 23846442 -95898456 - AluSc SINE Alu -20 289 73 978 69 0 0 chr13 23846444 23846560 -95898338 - AluSc SINE Alu -180 129 14 983 204 13 34 chr13 23846561 23846796 -95898102 - L1MC1 LINE L1 -816 5330 5101 248 269 78 91 chr13 23847166 23847978 -95896920 - L1MDa LINE L1 -856 2045 1285 541 304 57 0 chr13 23848474 23848668 -95896230 + MIR SINE MIR 37 241 -21 24 77 0 0 chr13 23848676 23848728 -95896170 + AT_rich Low_complexity Low_complexity 1 52 0 1290 178 5 5 chr13 23848864 23849077 -95895821 - AluJb SINE Alu -13 299 87 2136 104 10 13 chr13 23849087 23849386 -95895512 - AluSx SINE Alu -14 298 1 2307 57 0 4 chr13 23849885 23850195 -95894703 + AluY SINE Alu 1 309 0 2229 115 3 0 chr13 23850952 23851247 -95893651 + AluSx SINE Alu 1 296 -16 313 134 15 15 chr13 23851334 23851401 -95893497 + GA-rich Low_complexity Low_complexity 3 69 0 1947 191 70 27 chr13 23851489 23851929 -95892969 - LTR2B LTR ERV1 0 490 32 186 333 14 92 chr13 23852836 23852977 -95891921 - L2 LINE L2 -10 3262 3133 2112 117 3 10 chr13 23853145 23853464 -95891434 - AluSx SINE Alu 0 312 1 1516 189 42 95 chr13 23853492 23853818 -95891080 - L1ME1 LINE L1 -6 6160 5861 2280 102 17 0 chr13 23853818 23854111 -95890787 + AluSx SINE Alu 1 298 -14 1516 189 42 95 chr13 23854111 23854217 -95890681 - L1ME1 LINE L1 -305 5861 5751 200 200 18 0 chr13 23854498 23854553 -95890345 + (TCCA)n Simple_repeat Simple_repeat 3 58 0 197 305 86 47 chr13 23854567 23854695 -95890203 - L2 LINE L2 -2 3270 3138 3428 121 74 3 chr13 23855395 23855965 -95888933 + LTR24C LTR ERV1 1 610 -25 830 184 0 0 chr13 23855965 23856106 -95888792 + FLAM_A SINE Alu 1 141 -1 311 53 0 0 chr13 23856108 23856146 -95888752 + LTR24C LTR ERV1 598 635 0 1545 167 108 7 chr13 23856304 23856573 -95888325 - AluJo SINE Alu -16 296 1 2378 106 0 0 chr13 23856584 23856886 -95888012 - AluSx SINE Alu -10 302 1 207 185 19 37 chr13 23857571 23857625 -95887273 + A-rich Low_complexity Low_complexity 4 56 0 1091 196 47 120 chr13 23857785 23858360 -95886538 + MER34B LTR ERV1 1 521 -21 3980 124 38 11 chr13 23858544 23858764 -95886134 - MER39B LTR ERV1 0 653 440 1468 189 0 4 chr13 23858764 23859007 -95885891 - AluJo SINE Alu -70 242 1 2207 114 7 0 chr13 23859014 23859312 -95885586 - AluSc SINE Alu -9 300 1 3980 124 38 11 chr13 23859312 23859718 -95885180 - MER39B LTR ERV1 -218 435 2 849 192 33 33 chr13 23860001 23860183 -95884715 - MER70A LTR ERVL -16 456 275 976 178 31 21 chr13 23860229 23860420 -95884478 - MER70B LTR ERVL -385 193 1 6007 118 16 3 chr13 23860784 23861676 -95883222 - MER4D LTR ERV1 0 903 1 198 256 178 11 chr13 23861726 23861816 -95883082 + L2 LINE L2 3206 3310 -3 896 199 21 31 chr13 23862341 23862532 -95882366 - MER5A DNA MER1_type 0 189 1 2759 19 0 13 chr13 23862562 23862872 -95882026 - AluYa5 SINE Alu -5 306 1 741 202 0 11 chr13 23862877 23863141 -95881757 + CT-rich Low_complexity Low_complexity 1 261 0 1446 155 4 13 chr13 23863154 23863393 -95881505 - AluJo SINE Alu -73 239 3 1150 132 20 0 chr13 23863542 23863739 -95881159 - L1MA4A LINE L1 0 6303 6103 1413 142 18 0 chr13 23864822 23865041 -95879857 - MER44D DNA MER2_type -14 591 314 808 209 14 0 chr13 23865041 23865189 -95879709 - FRAM SINE Alu -26 150 1 1822 189 12 16 chr13 23865190 23865512 -95879386 - MER44D DNA MER2_type -377 328 8 1355 214 16 43 chr13 23865834 23865953 -95878945 + MLT1A1 LTR MaLR 53 174 -191 1719 207 8 40 chr13 23865953 23866330 -95878568 - MLT1A1 LTR MaLR 0 365 1 1355 214 16 43 chr13 23866330 23866532 -95878366 + MLT1A1 LTR MaLR 174 365 0 530 367 96 0 chr13 23867144 23867384 -95877514 - L2 LINE L2 0 3272 3010 375 313 151 20 chr13 23867712 23868443 -95876455 - L2 LINE L2 -731 2583 1758 261 83 0 0 chr13 23869122 23869158 -95875740 + (TTCA)n Simple_repeat Simple_repeat 4 39 0 2215 156 85 16 chr13 23869256 23869679 -95875219 - LTR47A LTR ERVL 0 452 1 213 200 21 116 chr13 23869717 23869812 -95875086 - L2 LINE L2 -181 3091 3006 1303 62 0 0 chr13 23871088 23871249 -95873649 + L1PA8 LINE L1 5998 6158 -14 2228 96 3 3 chr13 23871283 23871574 -95873324 + AluSc SINE Alu 1 291 -18 180 200 0 0 chr13 23873112 23873157 -95871741 + (TATATG)n Simple_repeat Simple_repeat 3 47 0 1148 129 0 0 chr13 23873184 23873339 -95871559 - AluSq SINE Alu -158 155 1 579 222 44 39 chr13 23873339 23873519 -95871379 - L1M4 LINE L1 -1100 5046 4866 206 372 39 74 chr13 23873750 23874008 -95870890 + L2 LINE L2 2992 3240 -32 186 167 0 0 chr13 23875183 23875219 -95869679 + (CATATA)n Simple_repeat Simple_repeat 5 40 0 2162 100 14 17 chr13 23876315 23876606 -95868292 - AluSx SINE Alu -22 290 1 2055 114 0 0 chr13 23876758 23877038 -95867860 - AluSq SINE Alu -1 312 33 237 313 61 10 chr13 23877508 23877607 -95867291 - MIR3 SINE MIR -10 198 95 2354 102 0 3 chr13 23877675 23877980 -95866918 - AluSx SINE Alu -8 304 1 751 295 119 28 chr13 23878726 23879325 -95865573 + L2 LINE L2 2420 3142 -171 1687 196 7 0 chr13 23879325 23879616 -95865282 - AluJo SINE Alu -19 293 1 751 295 119 28 chr13 23879616 23879728 -95865170 + L2 LINE L2 3142 3242 -71 192 360 13 0 chr13 23880884 23880959 -95863939 + MIR3 SINE MIR 95 170 -38 294 172 0 17 chr13 23881149 23881207 -95863691 - MER5A DNA MER1_type -78 111 55 1172 216 164 19 chr13 23881949 23882320 -95862578 - LTR37A LTR ERV1 0 426 2 201 175 0 0 chr13 23882538 23882578 -95862320 + (TG)n Simple_repeat Simple_repeat 1 40 0 646 189 57 39 chr13 23882802 23882984 -95861914 - MER39 LTR ERV1 0 684 399 906 114 0 0 chr13 23884071 23884202 -95860696 + L1PA10 LINE L1 6028 6158 -10 1719 186 3 0 chr13 23884831 23885121 -95859777 - AluJo SINE Alu -21 291 1 2619 139 11 18 chr13 23886101 23886547 -95858351 - MER65A LTR ERV1 -1 444 2 364 284 129 40 chr13 23886694 23887235 -95857663 - L1MC4a LINE L1 -599 5575 5348 2209 131 0 0 chr13 23888163 23888461 -95856437 + AluSq SINE Alu 1 298 -15 391 148 0 0 chr13 23888884 23888945 -95855953 - L1MC1 LINE L1 -395 5938 5878 237 27 0 0 chr13 23888950 23888987 -95855911 - Alu SINE Alu -1 298 262 1131 141 5 44 chr13 23889006 23889060 -95855838 - L1MC1 LINE L1 -395 5938 5883 2457 76 0 7 chr13 23889060 23889364 -95855534 - AluY SINE Alu -9 302 1 1131 141 5 44 chr13 23889364 23889515 -95855383 - L1MC1 LINE L1 -450 5883 5741 * 1660 176 25 41 chr13 23889496 23889596 -95855302 + L1MC2 LINE L1 5917 6017 -327 2221 154 65 12 chr13 23889596 23889999 -95854899 - MSTB LTR MaLR 0 426 3 1660 176 25 41 chr13 23889999 23890149 -95854749 + L1MC2 LINE L1 6017 6168 -176 2018 134 0 11 chr13 23890149 23890433 -95854465 + AluSx SINE Alu 1 281 -31 204 40 0 0 chr13 23890438 23890463 -95854435 + (TAA)n Simple_repeat Simple_repeat 2 26 0 1660 176 25 41 chr13 23890463 23890568 -95854330 + L1MC2 LINE L1 6172 6273 -71 3154 95 71 11 chr13 23890589 23891040 -95853858 + MER1A DNA MER1_type 51 528 -1 233 180 20 0 chr13 23891041 23891091 -95853807 + L1MC2 LINE L1 6270 6320 -24 2190 125 0 0 chr13 23891102 23891397 -95853501 + AluSc SINE Alu 1 295 -14 1738 158 50 0 chr13 23891404 23891682 -95853216 + AluJb SINE Alu 1 292 -20 23 33 0 0 chr13 23891687 23891717 -95853181 + AT_rich Low_complexity Low_complexity 1 30 0 2158 121 0 9 chr13 23892574 23892889 -95852009 + AluSq SINE Alu 1 312 -1 213 290 14 0 chr13 23893617 23893686 -95851212 - L2 LINE L2 -994 2320 2251 213 272 126 46 chr13 23893777 23894016 -95850882 - L2 LINE L2 -1232 2082 1825 2183 117 17 0 chr13 23894087 23894386 -95850512 - AluSx SINE Alu -8 304 1 285 98 0 0 chr13 23894484 23894525 -95850373 + (CA)n Simple_repeat Simple_repeat 2 42 0 2342 93 6 3 chr13 23894630 23894941 -95849957 - AluSp SINE Alu -1 312 1 1881 188 22 5 chr13 23895277 23895644 -95849254 - L1MB7 LINE L1 -67 6117 5745 1938 149 0 3 chr13 23896754 23897055 -95847843 - AluJo SINE Alu 0 312 13 2305 173 44 2 chr13 23897189 23897618 -95847280 + L1PB4 LINE L1 5710 6156 0 2062 139 0 16 chr13 23897825 23898142 -95846756 - AluSx SINE Alu 0 312 1 2439 71 10 0 chr13 23898616 23898912 -95845986 - AluSq SINE Alu -14 299 1 669 56 0 0 chr13 23899406 23899496 -95845402 + (TG)n Simple_repeat Simple_repeat 2 91 0 5768 116 18 13 chr13 23899611 23900273 -95844625 - L1PA16 LINE L1 -9 6157 5489 2013 146 7 3 chr13 23900273 23900568 -95844330 - AluJb SINE Alu -16 296 1 5768 116 18 13 chr13 23900568 23900756 -95844142 - L1PA16 LINE L1 -677 5489 5303 1828 154 17 7 chr13 23901854 23902152 -95842746 + AluJo SINE Alu 2 302 -10 205 26 53 26 chr13 23902157 23902195 -95842703 + (GAAAA)n Simple_repeat Simple_repeat 5 43 0 1685 164 34 20 chr13 23903120 23903412 -95841486 + AluJo SINE Alu 1 296 -16 4472 144 64 53 chr13 23905225 23905903 -95838995 - L1MB3 LINE L1 -2 6181 5493 1572 171 28 21 chr13 23905903 23906190 -95838708 - AluJo SINE Alu -8 304 16 4472 144 64 53 chr13 23906190 23906617 -95838281 - L1MB3 LINE L1 -690 5493 5072 640 238 15 40 chr13 23907164 23907366 -95837532 + L2 LINE L2 3117 3313 0 2167 218 134 46 chr13 23907450 23908130 -95836768 - L1ME3 LINE L1 -30 6201 5411 1992 127 29 0 chr13 23908130 23908429 -95836469 - AluSx SINE Alu 0 307 1 2167 218 134 46 chr13 23908429 23908719 -95836179 - L1ME3 LINE L1 -820 5411 5148 840 212 0 0 chr13 23910338 23910511 -95834387 - AluJb SINE Alu 0 309 137 1460 108 21 21 chr13 23910754 23910892 -95834006 - L1MA4 LINE L1 0 6300 6160 2491 199 107 60 chr13 23910892 23911681 -95833217 - LTR1B LTR ERV1 0 826 1 1460 108 21 21 chr13 23911681 23911783 -95833115 - L1MA4 LINE L1 -139 6161 6060 240 306 87 27 chr13 23912014 23912137 -95832761 - L1ME LINE L1 -224 5897 5758 2130 116 0 47 chr13 23912137 23912456 -95832442 - AluSx SINE Alu -8 304 1 240 306 87 27 chr13 23912456 23912515 -95832383 - L1ME LINE L1 -363 5758 5704 1848 236 142 12 chr13 23912561 23913314 -95831584 - L1ME3 LINE L1 -2928 3287 2437 5233 78 10 3 chr13 23913315 23914017 -95830881 - L1PA13 LINE L1 -3 6160 5454 198 0 0 0 chr13 23914020 23914042 -95830856 + (TG)n Simple_repeat Simple_repeat 1 22 0 2497 46 0 0 chr13 23914042 23914322 -95830576 - AluY SINE Alu -31 280 1 592 169 0 0 chr13 23914324 23914413 -95830485 - AluJ/FLAM SINE Alu -222 90 2 787 262 70 23 chr13 23914433 23914777 -95830121 - L1ME3 LINE L1 -5015 1381 1022 605 321 15 19 chr13 23914771 23915033 -95829865 - L1ME3 LINE L1 -6100 296 36 * 2445 80 3 0 chr13 23915344 23915646 -95829252 - AluY SINE Alu -8 303 1 2073 122 7 0 chr13 23916307 23916601 -95828297 + AluSx SINE Alu 1 296 -16 2104 102 4 4 chr13 23916617 23916891 -95828007 - AluSq SINE Alu -11 302 29 427 337 10 15 chr13 23917860 23918059 -95826839 - LTR16B LTR ERVL -9 455 258 2454 76 0 0 chr13 23918135 23918436 -95826462 + AluSg SINE Alu 1 301 -9 1630 110 9 0 chr13 23920368 23920596 -95824302 + MER30 DNA MER1_type 1 230 0 369 299 7 28 chr13 23920948 23921092 -95823806 + MIR SINE MIR 81 221 -41 637 188 8 16 chr13 23921879 23922007 -95822891 - FLAM_A SINE Alu -6 127 1 564 309 127 16 chr13 23922895 23923335 -95821563 - L2 LINE L2 0 3313 2825 2175 111 4 0 chr13 23923413 23923727 -95821171 + AluSx SINE Alu 1 315 0 333 118 0 0 chr13 23925325 23925376 -95819522 + (GGA)n Simple_repeat Simple_repeat 3 53 0 451 206 22 0 chr13 23925376 23925468 -95819430 + MER58C DNA MER1_type 122 215 0 224 232 36 0 chr13 23925487 23925543 -95819355 - MIR SINE MIR -66 142 85 1233 262 83 101 chr13 23925697 23926419 -95818479 - MER21B LTR ERV1 -149 714 6 23 68 0 0 chr13 23926903 23926947 -95817951 + AT_rich Low_complexity Low_complexity 1 44 0 180 0 0 0 chr13 23927944 23927964 -95816934 + (A)n Simple_repeat Simple_repeat 1 20 0 295 243 54 72 chr13 23928303 23928414 -95816484 - L2 LINE L2 0 3313 3205 941 134 0 12 chr13 23929163 23929327 -95815571 + (TTTC)n Simple_repeat Simple_repeat 3 164 0 841 125 0 8 chr13 23929328 23929448 -95815450 - FLAM_C SINE Alu -24 119 1 2352 48 10 3 chr13 23931080 23931374 -95813524 - AluY SINE Alu -15 296 1 201 108 0 0 chr13 23932280 23932317 -95812581 + (CGGGGG)n Simple_repeat Simple_repeat 3 39 0 26 30 0 0 chr13 23932400 23932433 -95812465 + GC_rich Low_complexity Low_complexity 1 33 0 365 323 0 0 chr13 23933252 23933351 -95811547 - MIR SINE MIR -127 135 37 3349 151 53 67 chr13 23933896 23934598 -95810300 + L1MB7 LINE L1 5433 6124 -60 2153 107 28 0 chr13 23934877 23935166 -95809732 - AluSx SINE Alu -15 297 1 2260 123 0 0 chr13 23935635 23935935 -95808963 + AluSx SINE Alu 1 300 -12 26 64 0 0 chr13 23936111 23936158 -95808740 + AT_rich Low_complexity Low_complexity 1 47 0 1088 205 31 5 chr13 23937066 23937290 -95807608 - L1MB8 LINE L1 -39 6139 5910 21 36 0 0 chr13 23937351 23937379 -95807519 + AT_rich Low_complexity Low_complexity 1 28 0 2528 75 0 3 chr13 23937803 23938110 -95806788 + AluY SINE Alu 1 306 -5 5712 116 0 15 chr13 23938224 23938371 -95806527 - L1PA14 LINE L1 0 6161 6013 1978 97 38 56 chr13 23938371 23938659 -95806239 - AluSx SINE Alu -29 283 1 5712 116 0 15 chr13 23938659 23939553 -95805345 - L1PA14 LINE L1 -148 6013 5144 2021 130 0 13 chr13 23939813 23940112 -95804786 - AluSx SINE Alu -16 296 2 1183 210 47 5 chr13 23940879 23941175 -95803723 + L1MD3 LINE L1 7481 7967 -15 2318 101 0 0 chr13 23941178 23941474 -95803424 + AluSq SINE Alu 1 296 -17 277 174 64 92 chr13 23942334 23942379 -95802519 - Charlie7 DNA MER1_type 0 2612 2567 2182 93 21 3 chr13 23942379 23942669 -95802229 - AluSc SINE Alu -14 295 1 277 174 64 92 chr13 23942669 23942732 -95802166 - Charlie7 DNA MER1_type -45 2567 2507 * 713 266 35 31 chr13 23942726 23943015 -95801883 - Charlie7 DNA MER1_type -1923 689 400 7411 59 8 38 chr13 23943016 23944725 -95800173 - SVA Other Other -683 1383 1 291 297 79 7 chr13 23944801 23944979 -95799919 + MLT1J LTR MaLR 43 270 -241 421 278 42 0 chr13 23944988 23945132 -95799766 - Charlie7 DNA MER1_type -2209 403 254 1487 154 41 110 chr13 23945139 23945529 -95799369 - MLT1A2 LTR MaLR -11 363 1 295 268 143 0 chr13 23945572 23945684 -95799214 - Charlie7 DNA MER1_type -2429 183 56 189 262 8 71 chr13 23945958 23946084 -95798814 - L2 LINE L2 -250 3022 2905 2238 114 16 50 chr13 23946115 23946492 -95798406 + THE1B LTR MaLR 1 364 0 877 157 8 0 chr13 23947144 23947278 -95797620 + AluJo SINE Alu 3 137 -175 198 0 0 0 chr13 23948018 23948040 -95796858 + (TTTA)n Simple_repeat Simple_repeat 2 23 0 2067 122 10 7 chr13 23948044 23948339 -95796559 - AluSq SINE Alu -16 297 2 1821 151 3 14 chr13 23950206 23950498 -95794400 + AluJb SINE Alu 1 289 -23 263 299 62 0 chr13 23950973 23951070 -95793828 + MIR SINE MIR 151 253 -9 198 103 0 0 chr13 23951353 23951382 -95793516 + (TTTC)n Simple_repeat Simple_repeat 2 30 0 236 353 58 13 chr13 23951444 23951600 -95793298 + MIR SINE MIR 56 218 -44 1292 174 20 4 chr13 23951680 23951927 -95792971 - L1MB2 LINE L1 0 6171 5921 1498 152 144 0 chr13 23951984 23952240 -95792658 + AluSx SINE Alu 3 295 -17 244 233 55 27 chr13 23953977 23954050 -95790848 - MIR SINE MIR -115 147 73 395 216 237 0 chr13 23954076 23954173 -95790725 + MER97b DNA MER1_type? 27 146 -907 1051 224 82 30 chr13 23954241 23954555 -95790343 - AluJo SINE Alu 0 341 14 491 279 54 44 chr13 23954696 23954900 -95789998 + MER97c DNA MER1_type? 274 479 -611 759 176 7 7 chr13 23954914 23955050 -95789848 - AluJo SINE Alu -175 137 2 1216 209 120 9 chr13 23955051 23955400 -95789498 + MER97b DNA MER1_type? 472 859 -194 363 270 40 62 chr13 23955510 23955579 -95789319 + MER97c DNA MER1_type? 867 936 -154 2184 123 3 0 chr13 23955579 23955879 -95789019 - AluSx SINE Alu -11 301 1 363 270 40 62 chr13 23955879 23956035 -95788863 + MER97c DNA MER1_type? 936 1087 -3 194 354 25 0 chr13 23956170 23956249 -95788649 + MIR3 SINE MIR 119 199 -9 1623 172 0 29 chr13 23958974 23959282 -95785616 - AluJo SINE Alu -5 307 9 2129 75 3 38 chr13 23961194 23961509 -95783389 + AluY SINE Alu 1 305 0 370 250 318 5 chr13 23962233 23962425 -95782473 - MIR SINE MIR -3 259 8 190 286 66 33 chr13 23962971 23963062 -95781836 + MIR SINE MIR 50 143 -119 1622 158 44 11 chr13 23964117 23964390 -95780508 - AluJb SINE Alu -20 292 11 1779 223 98 25 chr13 23964655 23965175 -95779723 - MER74A LTR ERVL 0 558 1 195 129 0 0 chr13 23967935 23967966 -95776932 + (T)n Simple_repeat Simple_repeat 1 31 0 2934 7 0 0 chr13 23967982 23968291 -95776607 + AluYb8 SINE Alu 1 309 -9 313 136 0 0 chr13 23970234 23970278 -95774620 - Alu SINE Alu -256 44 1 * 859 133 193 6 chr13 23970278 23970439 -95774459 - MER46B DNA MER2_type -169 67 1 319 196 0 0 chr13 23970391 23970447 -95774451 + MER46A DNA MER2_type 97 152 -84 * 204 40 0 0 chr13 23970461 23970486 -95774412 + (TA)n Simple_repeat Simple_repeat 2 26 0 315 0 0 0 chr13 23970743 23970778 -95774120 + (TG)n Simple_repeat Simple_repeat 2 36 0 2230 64 4 0 chr13 23970925 23971192 -95773706 - AluY SINE Alu -9 302 35 606 264 68 23 chr13 23971199 23971506 -95773392 - HAL1 LINE L1 -1126 1381 1061 283 169 108 0 chr13 23971581 23971646 -95773252 - HAL1 LINE L1 -1608 899 828 3966 192 23 12 chr13 23971653 23972429 -95772469 - L1MB4 LINE L1 0 6180 5396 619 299 58 58 chr13 23972418 23972990 -95771908 - HAL1 LINE L1 -1653 854 283 * 2264 106 3 0 chr13 23973169 23973462 -95771436 + AluSq SINE Alu 1 294 -19 28 29 0 0 chr13 23974712 23974747 -95770151 + AT_rich Low_complexity Low_complexity 1 35 0 5643 115 20 53 chr13 23974766 23975883 -95769015 - L1PB1 LINE L1 -21 6130 5058 1388 199 24 10 chr13 23978537 23978833 -95766065 + L1MB4 LINE L1 5880 6179 -1 220 209 0 0 chr13 23978851 23978894 -95766004 + (CATA)n Simple_repeat Simple_repeat 2 44 0 331 261 106 49 chr13 23979678 23979904 -95764994 + L1 LINE L1 4177 4415 -1731 23 0 0 0 chr13 23980084 23980107 -95764791 + AT_rich Low_complexity Low_complexity 1 23 0 225 0 0 0 chr13 23982166 23982191 -95762707 + (TC)n Simple_repeat Simple_repeat 2 26 0 2105 108 11 14 chr13 23982191 23982478 -95762420 - AluSx SINE Alu -26 286 1 230 255 53 94 chr13 23984003 23984120 -95760778 - MIR SINE MIR -84 124 10 481 259 40 65 chr13 23984421 23984742 -95760156 - HAL1 LINE L1 -1351 1156 844 771 235 108 110 chr13 23985223 23985669 -95759229 + MLT2B2 LTR ERVL 1 445 -19 253 250 44 0 chr13 23986159 23986227 -95758671 + L1ME3A LINE L1 6072 6142 -28 2275 120 0 0 chr13 23987097 23987406 -95757492 - AluSx SINE Alu -3 309 1 26 0 0 0 chr13 23987408 23987434 -95757464 + AT_rich Low_complexity Low_complexity 1 26 0 743 151 0 0 chr13 23987445 23987551 -95757347 + U6 snRNA snRNA 2 107 0 871 315 44 46 chr13 23989241 23989839 -95755059 + L2 LINE L2 2711 3302 -11 13777 169 38 62 chr13 23990244 23990917 -95753981 - L1MA4 LINE L1 -12 6470 5782 2334 81 3 44 chr13 23990917 23991238 -95753660 - AluY SINE Alu -3 308 1 13777 169 38 62 chr13 23991238 23992039 -95752859 - L1MA4 LINE L1 -700 5782 4963 482 184 69 0 chr13 23992039 23992126 -95752772 - FLAM SINE Alu -12 131 39 13777 169 38 62 chr13 23992126 23993167 -95751731 - L1MA4 LINE L1 -1519 4963 3899 1934 146 24 3 chr13 23993167 23993462 -95751436 + AluSx SINE Alu 1 301 -11 13777 169 38 62 chr13 23993462 23993598 -95751300 - L1MA4 LINE L1 -2583 3899 3761 875 175 18 24 chr13 23993598 23993764 -95751134 - AluJb SINE Alu -13 299 135 13777 169 38 62 chr13 23993764 23997516 -95747382 - L1MA4 LINE L1 -2721 3761 1 651 160 194 0 chr13 23997605 23997755 -95747143 + MER5A DNA MER1_type 4 187 -2 646 51 0 0 chr13 23998987 23999065 -95745833 - L1PA5 LINE L1 -1 6153 6076 212 373 36 0 chr13 23999071 23999181 -95745717 + (CATATA)n Simple_repeat Simple_repeat 3 116 0 1769 105 34 4 chr13 23999194 23999465 -95745433 - L1PA5 LINE L1 -34 6120 5841 581 76 49 45 chr13 24001443 24001709 -95743189 + (TA)n Simple_repeat Simple_repeat 1 267 0 317 275 0 37 chr13 24001712 24001821 -95743077 + L1MC4 LINE L1 6614 6718 -1324 1983 146 104 3 chr13 24001924 24002252 -95742646 + MER46B DNA MER2_type 1 236 0 1988 156 3 3 chr13 24002982 24003290 -95741608 - AluJb SINE Alu -4 308 1 203 293 120 23 chr13 24005037 24005170 -95739728 - L2 LINE L2 -26 3246 3101 * 708 235 16 22 chr13 24005107 24005290 -95739608 - MER5A DNA MER1_type -7 182 1 2059 133 13 3 chr13 24005860 24006169 -95738729 + AluJb SINE Alu 1 312 0 2097 112 3 16 chr13 24006437 24006740 -95738158 - AluSx SINE Alu -13 299 1 323 320 22 43 chr13 24007191 24007392 -95737506 - MIR SINE MIR -60 202 4 342 308 83 8 chr13 24007638 24007758 -95737140 + MIR SINE MIR 21 149 -113 694 279 25 15 chr13 24007778 24007982 -95736916 - MIR SINE MIR -56 206 1 360 0 0 0 chr13 24009385 24009425 -95735473 + (TG)n Simple_repeat Simple_repeat 2 41 0 1718 138 19 70 chr13 24009425 24009737 -95735161 - AluJo SINE Alu -16 296 1 341 296 179 25 chr13 24009817 24009979 -95734919 - MIR SINE MIR -19 243 57 2172 129 0 10 chr13 24011180 24011489 -95733409 - AluSx SINE Alu -6 306 1 1338 159 0 10 chr13 24011650 24011858 -95733040 + AluJo SINE Alu 86 291 -21 21 36 0 0 chr13 24013237 24013265 -95731633 + AT_rich Low_complexity Low_complexity 1 28 0 222 327 159 0 chr13 24014422 24014535 -95730363 - L2 LINE L2 0 3272 3142 250 333 116 21 chr13 24014818 24015242 -95729656 - L2 LINE L2 -2333 981 518 565 167 11 0 chr13 24015752 24015842 -95729056 + FLAM_A SINE Alu 36 126 -16 2129 138 0 0 chr13 24015954 24016259 -95728639 - AluJb SINE Alu -7 305 1 497 241 103 69 chr13 24017015 24017172 -95727726 - MIR SINE MIR -37 225 56 2220 96 0 0 chr13 24017172 24017499 -95727399 + AluSx SINE Alu 1 327 0 497 241 103 69 chr13 24017499 24017542 -95727356 - MIR SINE MIR -206 56 16 3801 109 13 2 chr13 24017542 24018064 -95726834 + MER1A DNA MER1_type 1 528 -1 2008 144 0 6 chr13 24018266 24018579 -95726319 + AluSx SINE Alu 1 311 -1 2298 97 0 7 chr13 24019502 24019801 -95725097 + AluSg SINE Alu 1 297 -13 561 243 40 40 chr13 24019984 24020157 -95724741 - MLT1D LTR MaLR 0 505 333 628 223 0 136 chr13 24020208 24020347 -95724551 - MLT1D LTR MaLR -315 190 90 2177 107 3 3 chr13 24020347 24020645 -95724253 + AluSx SINE Alu 1 298 -14 628 223 0 136 chr13 24020645 24020725 -95724173 - MLT1D LTR MaLR -415 90 1 588 258 92 72 chr13 24022045 24022309 -95722589 - L1MEc LINE L1 -4303 2093 1819 2230 119 0 0 chr13 24022309 24022611 -95722287 - AluSx SINE Alu -10 302 1 588 258 92 72 chr13 24022611 24022706 -95722192 - L1MEc LINE L1 -4577 1819 1727 286 282 137 8 chr13 24022707 24022948 -95721950 - L1MEc LINE L1 -4425 1971 1700 197 208 42 21 chr13 24024005 24024053 -95720845 + L2 LINE L2 3261 3309 -4 474 18 0 0 chr13 24024836 24024891 -95720007 + (TG)n Simple_repeat Simple_repeat 2 56 0 2079 137 0 3 chr13 24024892 24025184 -95719714 - AluSx SINE Alu -21 291 1 6091 102 7 4 chr13 24025950 24026965 -95717933 - L1PA16 LINE L1 -2 6164 5128 253 292 201 11 chr13 24027026 24027184 -95717714 - MIR SINE MIR -61 147 3 2139 105 17 10 chr13 24028232 24028526 -95716372 - AluSq SINE Alu -17 296 1 23 0 0 0 chr13 24029139 24029162 -95715736 + AT_rich Low_complexity Low_complexity 1 23 0 2197 131 3 0 chr13 24029575 24029880 -95715018 + AluSx SINE Alu 1 306 -6 1690 178 11 3 chr13 24030166 24030452 -95714446 - AluJo SINE Alu -24 288 1 274 284 62 62 chr13 24030550 24030726 -95714172 - HAL1 LINE L1 -23 2484 2309 2324 105 0 3 chr13 24030742 24031048 -95713850 + AluSx SINE Alu 1 305 -7 434 314 118 14 chr13 24031560 24031836 -95713062 + L1ME LINE L1 5298 5600 -570 383 136 30 0 chr13 24031848 24031914 -95712984 + L1MC3 LINE L1 7552 7619 -166 418 272 49 33 chr13 24031924 24032125 -95712773 + L1ME LINE L1 5605 5824 -297 825 267 88 18 chr13 24032574 24032859 -95712039 + MER69 DNA AcHobo 244 548 -1978 1199 216 101 23 chr13 24032869 24033305 -95711593 + MER69 DNA AcHobo 2022 2491 -35 423 0 0 0 chr13 24033806 24033853 -95711045 + (CA)n Simple_repeat Simple_repeat 2 48 0 426 214 46 64 chr13 24034505 24034678 -95710220 - HAL1 LINE L1 -8 2499 2330 21 0 0 0 chr13 24034925 24034946 -95709952 + AT_rich Low_complexity Low_complexity 1 21 0 228 284 12 49 chr13 24035125 24035206 -95709692 - HAL1 LINE L1 -767 1740 1663 401 290 248 29 chr13 24035215 24035522 -95709376 - HAL1 LINE L1 -898 1609 1236 6288 55 46 45 chr13 24035522 24036640 -95708258 - SVA Other Other -551 1380 433 362 279 99 87 chr13 24086663 24086985 -95657913 - L1M4 LINE L1 -1826 4320 3995 1055 268 104 30 chr13 24087011 24087458 -95657440 - L1M4 LINE L1 -2218 3928 3411 2261 103 7 0 chr13 24087458 24087748 -95657150 + AluSc SINE Alu 1 292 -17 1055 268 104 30 chr13 24087748 24087990 -95656908 - L1M4 LINE L1 -2735 3411 3188 303 316 95 57 chr13 24088537 24088800 -95656098 - L1M4 LINE L1 -1186 4960 4688 860 132 26 0 chr13 24089381 24089519 -95655379 - L1P LINE L1 -1118 5028 4884 2850 100 15 8 chr13 24089519 24089920 -95654978 + L1PA13 LINE L1 5760 6163 0 860 132 26 0 chr13 24089920 24089933 -95654965 - L1P LINE L1 -1262 4884 4873 1830 167 7 10 chr13 24090497 24090802 -95654096 - AluJb SINE Alu -8 304 1 2287 111 7 0 chr13 24091447 24091754 -95653144 - AluSx SINE Alu -3 309 1 368 287 144 11 chr13 24092338 24092519 -95652379 + MIR SINE MIR 39 243 -19 2291 105 10 0 chr13 24092573 24092868 -95652030 - AluSx SINE Alu -14 298 1 764 77 0 0 chr13 24092961 24093052 -95651846 + AluSg/x SINE Alu 208 298 -14 2289 129 0 0 chr13 24093066 24093377 -95651521 + AluSx SINE Alu 1 311 -1 687 239 101 0 chr13 24093680 24093868 -95651030 - MER102a DNA MER1_type 0 330 124 1134 227 61 64 chr13 24094566 24094651 -95650247 + MER90 LTR ERV1 238 322 -292 2333 91 0 3 chr13 24094651 24094949 -95649949 + AluSq SINE Alu 1 297 -16 1134 227 61 64 chr13 24094949 24095238 -95649660 + MER90 LTR ERV1 322 611 -3 953 271 8 4 chr13 24098271 24098511 -95646387 + MIR SINE MIR 1 241 -21 348 296 24 48 chr13 24099377 24099502 -95645396 - MIR SINE MIR -117 145 24 1508 127 0 0 chr13 24100222 24100435 -95644463 + AluJb SINE Alu 1 213 -99 821 153 8 15 chr13 24101610 24101741 -95643157 + FLAM_A SINE Alu 4 133 0 767 146 0 41 chr13 24102022 24102145 -95642753 - FLAM_A SINE Alu -13 120 3 221 163 75 0 chr13 24102169 24102249 -95642649 + (TA)n Simple_repeat Simple_repeat 1 86 0 1914 118 3 88 chr13 24102496 24102835 -95642063 - AluSx SINE Alu -2 310 1 4477 239 48 62 chr13 24103252 24103284 -95641614 - L1M4c LINE L1 -4186 2639 2608 1538 142 62 31 chr13 24103284 24103531 -95641367 - L1MB5 LINE L1 -8 6166 5907 2477 186 13 45 chr13 24103531 24104003 -95640895 + MSTB2 LTR MaLR 1 457 0 1538 142 62 31 chr13 24104003 24104044 -95640854 - L1MB5 LINE L1 -267 5907 5869 4477 239 48 62 chr13 24104044 24106523 -95638375 - L1M4c LINE L1 -4217 2608 14 9499 52 1 0 chr13 24107301 24108371 -95636527 + MER11C LTR ERVK 1 1071 0 297 320 20 0 chr13 24109046 24109146 -95635752 - L3 LINE CR1 -249 1328 1227 642 153 46 8 chr13 24112237 24112368 -95632530 + L1MA4A LINE L1 6168 6303 0 27 0 0 0 chr13 24112972 24112999 -95631899 + AT_rich Low_complexity Low_complexity 1 27 0 831 211 139 0 chr13 24113449 24113629 -95631269 - MER3 DNA MER1_type -4 205 1 421 222 159 8 chr13 24114982 24115108 -95629790 + MIR3 SINE MIR 4 148 -60 184 382 80 43 chr13 24115227 24115737 -95629161 - L2 LINE L2 -661 2653 2125 216 220 169 0 chr13 24116059 24116118 -95628780 - L2 LINE L2 -2066 1248 1180 1425 226 108 39 chr13 24116401 24116835 -95628063 + MLT1C LTR MaLR 3 466 -1 668 265 113 95 chr13 24121625 24122515 -95622383 - L2 LINE L2 0 3313 2318 379 252 72 9 chr13 24122831 24122942 -95621956 - MER102a DNA MER1_type -147 183 66 289 286 50 21 chr13 24123129 24123269 -95621629 + L2 LINE L2 3106 3249 -64 2491 258 22 41 chr13 24126854 24127666 -95617232 + L1ME1 LINE L1 5373 6334 0 412 259 27 34 chr13 24129177 24129324 -95615574 + Tigger8 DNA MER2_type 430 575 -91 192 40 0 0 chr13 24129959 24129984 -95614914 + (TC)n Simple_repeat Simple_repeat 2 26 0 843 186 84 0 chr13 24129990 24130157 -95614741 - AluY SINE Alu -3 308 128 1337 144 4 48 chr13 24130160 24130389 -95614509 - AluSg/x SINE Alu -11 299 81 1360 180 62 42 chr13 24130985 24131274 -95613624 - AluJo SINE Alu -17 295 1 12051 118 43 9 chr13 24131345 24133187 -95611711 - Tigger1 DNA MER2_type 0 2418 514 1675 158 0 4 chr13 24133204 24133470 -95611428 - Tigger1 DNA MER2_type -2153 265 1 2099 121 0 3 chr13 24133564 24133876 -95611022 - AluSx SINE Alu 0 311 1 643 326 49 0 chr13 24133927 24134151 -95610747 - MIR SINE MIR -14 248 14 1638 149 19 55 chr13 24134520 24134829 -95610069 - AluJb SINE Alu -14 298 1 3792 180 100 9 chr13 24136549 24137531 -95607367 - L1MB8 LINE L1 -6 6172 5092 396 0 0 0 chr13 24138019 24138063 -95606835 + (CA)n Simple_repeat Simple_repeat 2 45 0 2323 113 0 0 chr13 24139364 24139673 -95605225 - AluSc SINE Alu 0 309 1 2578 173 86 29 chr13 24139695 24140244 -95604654 + L1MB5 LINE L1 5587 6166 -8 287 300 15 62 chr13 24140424 24140554 -95604344 + MER5B DNA MER1_type 49 172 -6 1714 149 27 27 chr13 24140633 24140929 -95603969 - AluJo SINE Alu -14 298 3 204 317 65 65 chr13 24141067 24141190 -95603708 - MIR SINE MIR -122 140 18 460 233 54 0 chr13 24141942 24142071 -95602827 - L1ME4a LINE L1 0 6121 5986 210 91 0 0 chr13 24145399 24145432 -95599466 + (CAGA)n Simple_repeat Simple_repeat 2 34 0 29 0 0 0 chr13 24146401 24146430 -95598468 + AT_rich Low_complexity Low_complexity 1 29 0 1885 165 9 6 chr13 24146431 24146758 -95598140 - L1MA4 LINE L1 -10 6290 5963 215 317 39 39 chr13 24147166 24147270 -95597628 - MIR SINE MIR -47 215 112 2068 114 3 3 chr13 24147303 24147600 -95597298 - AluSx SINE Alu -15 297 1 813 185 0 22 chr13 24147723 24147858 -95597040 + FLAM_C SINE Alu 1 132 -1 396 103 0 0 chr13 24150411 24150469 -95594429 + (GGAA)n Simple_repeat Simple_repeat 3 60 0 913 286 145 31 chr13 24150521 24150934 -95593964 + L2 LINE L2 2854 3313 0 333 303 62 28 chr13 24151469 24151614 -95593284 - L2 LINE L2 -458 2856 2707 4185 177 57 37 chr13 24151615 24152897 -95592001 - L1MB7 LINE L1 0 6184 4870 497 276 8 16 chr13 24152981 24153104 -95591794 - L2 LINE L2 -8 3305 3184 270 262 29 141 chr13 24153639 24153845 -95591053 - MIR SINE MIR -17 245 63 509 80 13 0 chr13 24155723 24155798 -95589100 + (TGGA)n Simple_repeat Simple_repeat 1 76 0 2423 77 17 0 chr13 24156457 24156757 -95588141 - AluY SINE Alu -6 305 1 1096 188 99 5 chr13 24157257 24157417 -95587481 - AluJo SINE Alu -8 304 116 189 0 0 0 chr13 24157417 24157438 -95587460 + (TTA)n Simple_repeat Simple_repeat 2 22 0 1096 188 99 5 chr13 24157438 24157500 -95587398 - AluJo SINE Alu -196 116 61 628 221 19 6 chr13 24157508 24157666 -95587232 - L1MB7 LINE L1 0 6184 6025 811 173 71 0 chr13 24157666 24157834 -95587064 - L1 LINE L1 -1006 5140 4961 2829 176 8 51 chr13 24157904 24158490 -95586408 - L1MB7 LINE L1 -192 5992 5432 853 300 88 11 chr13 24159211 24159667 -95585231 - L1ME3A LINE L1 -244 5926 5436 292 312 21 7 chr13 24159698 24159839 -95585059 - L1ME3A LINE L1 -3746 2400 2258 1422 181 63 52 chr13 24160107 24160510 -95584388 + MLT1E3 LTR MaLR 140 624 0 218 320 13 13 chr13 24161255 24161333 -95583565 - L2 LINE L2 -33 3239 3162 200 261 0 0 chr13 24162247 24162293 -95582605 - MIR SINE MIR -119 143 98 1042 190 59 69 chr13 24162644 24163082 -95581816 - MLT1D LTR MaLR -2 503 1 323 286 60 30 chr13 24164508 24164641 -95580257 + MIR SINE MIR 12 148 -114 180 200 0 0 chr13 24165329 24165369 -95579529 + CT-rich Low_complexity Low_complexity 1 40 0 195 302 175 24 chr13 24165682 24165808 -95579090 - MIR SINE MIR -35 227 83 266 230 95 0 chr13 24166198 24166272 -95578626 + MER103 DNA DNA 74 154 -12 1769 169 3 7 chr13 24166304 24166606 -95578292 + AluJb SINE Alu 1 301 -11 1416 192 8 4 chr13 24167088 24167349 -95577549 + AluJb SINE Alu 1 262 -50 609 193 12 28 chr13 24167350 24167603 -95577295 + GA-rich Low_complexity Low_complexity 1 249 0 358 204 20 10 chr13 24167614 24167712 -95577186 + GA-rich Low_complexity Low_complexity 4 102 0 470 285 43 38 chr13 24170161 24170347 -95574551 - L3b LINE CR1 -180 1403 1217 214 296 0 19 chr13 24170407 24170461 -95574437 + L2 LINE L2 3219 3271 -1 344 349 66 0 chr13 24170785 24170937 -95573961 - L2 LINE L2 -10 3262 3101 2264 121 0 0 chr13 24170937 24171234 -95573664 - AluSq SINE Alu -16 297 1 1915 160 0 3 chr13 24171556 24171850 -95573048 - AluJb SINE Alu -13 299 7 3811 139 43 3 chr13 24171959 24172536 -95572362 + MER7C DNA MER2_type 2 601 -1 927 230 72 5 chr13 24172853 24173062 -95571836 - MER58A DNA MER1_type -1 223 1 204 280 53 83 chr13 24173415 24173547 -95571351 - MIR SINE MIR -45 217 90 1046 158 18 0 chr13 24173795 24173966 -95570932 - AluJb SINE Alu -12 300 127 2429 83 0 6 chr13 24173966 24174279 -95570619 - AluY SINE Alu 0 311 1 2538 78 0 0 chr13 24176323 24176631 -95568267 + AluY SINE Alu 1 308 -3 1579 180 37 27 chr13 24177677 24177972 -95566926 - AluJo SINE Alu -14 298 1 2089 142 51 3 chr13 24178282 24178614 -95566284 - MER7A DNA MER2_type 0 346 1 210 37 0 0 chr13 24178951 24178978 -95565920 + (TC)n Simple_repeat Simple_repeat 2 28 0 2148 154 61 50 chr13 24179271 24179733 -95565165 + MLT1C LTR MaLR 1 467 0 2242 72 0 31 chr13 24181221 24181543 -95563355 - AluSx SINE Alu 0 313 1 191 261 130 22 chr13 24183985 24184077 -95560821 - MIR SINE MIR -52 210 109 691 196 8 8 chr13 24186176 24186332 -95558566 + FLAM_A SINE Alu 1 133 0 1573 125 52 66 chr13 24187731 24188019 -95556879 - AluJo SINE Alu -3 309 26 234 244 119 62 chr13 24188095 24188288 -95556610 - L1ME4a LINE L1 -60 6061 5858 341 141 0 94 chr13 24188288 24188352 -95556546 + AluJ/FLAM SINE Alu 1 58 -244 2037 131 24 0 chr13 24188474 24188765 -95556133 + AluSx SINE Alu 1 298 -14 610 117 0 29 chr13 24188905 24189008 -95555890 - FRAM SINE Alu -7 169 70 29 0 0 0 chr13 24190980 24191009 -95553889 + AT_rich Low_complexity Low_complexity 1 29 0 2022 130 0 10 chr13 24191920 24192212 -95552686 + AluSg SINE Alu 1 289 -21 429 145 0 0 chr13 24192620 24192696 -95552202 - AluJ/FRAM SINE Alu -10 302 227 586 301 12 45 chr13 24192823 24193069 -95551829 + MIR SINE MIR 3 240 -22 198 0 0 0 chr13 24193799 24193821 -95551077 + (TG)n Simple_repeat Simple_repeat 1 22 0 359 202 12 0 chr13 24195270 24195354 -95549544 + GA-rich Low_complexity Low_complexity 2 86 0 696 197 0 0 chr13 24197792 24197914 -95546984 + FLAM_A SINE Alu 1 122 -11 278 173 58 19 chr13 24197915 24198019 -95546879 + (TA)n Simple_repeat Simple_repeat 1 108 0 2254 123 0 22 chr13 24198275 24198592 -95546306 + AluSx SINE Alu 1 310 -2 464 230 164 7 chr13 24200817 24200969 -95543929 + MER5A DNA MER1_type 14 189 0 1890 229 65 49 chr13 24202516 24203067 -95541831 - MER119 DNA MER1_type -21 562 3 223 356 85 5 chr13 24203496 24203684 -95541214 + L3 LINE CR1 849 1051 -526 361 282 41 47 chr13 24203721 24203891 -95541007 + L3 LINE CR1 1156 1324 -253 5218 73 30 6 chr13 24206292 24206967 -95537931 + LTR8 LTR ERV1 1 691 0 258 106 0 0 chr13 24209023 24209070 -95535828 + (TTTA)n Simple_repeat Simple_repeat 3 49 0 2032 109 0 21 chr13 24209070 24209355 -95535543 - AluSq SINE Alu -34 279 1 228 244 0 0 chr13 24209985 24210075 -95534823 + (TG)n Simple_repeat Simple_repeat 2 91 0 197 247 10 0 chr13 24210110 24210207 -95534691 + (TG)n Simple_repeat Simple_repeat 2 99 0 3274 100 15 0 chr13 24210413 24210874 -95534024 + L1PA10 LINE L1 5701 6168 0 291 377 62 0 chr13 24212323 24212469 -95532429 + MER91A DNA MER1_type 17 171 -25 322 220 14 113 chr13 24215263 24215404 -95529494 + L1MB3 LINE L1 6050 6176 -7 1680 186 46 15 chr13 24216906 24217233 -95527665 - MER1B DNA MER1_type 0 337 1 2329 53 0 28 chr13 24217290 24217574 -95527324 + AluY SINE Alu 16 291 -20 1999 141 3 20 chr13 24217783 24218089 -95526809 - AluSx SINE Alu -11 301 1 1202 187 72 75 chr13 24218809 24219025 -95525873 + MER2 DNA MER2_type 1 218 -127 2139 101 3 3 chr13 24219025 24219336 -95525562 - AluSq SINE Alu 0 311 1 1202 187 72 75 chr13 24219336 24219439 -95525459 + MER2 DNA MER2_type 218 320 -25 189 206 48 16 chr13 24219934 24219997 -95524901 - L2 LINE L2 -251 3021 2957 2298 93 3 0 chr13 24221057 24221347 -95523551 - AluSg SINE Alu -8 302 12 1809 110 0 4 chr13 24221412 24221648 -95523250 + AluSx SINE Alu 1 235 -77 25 0 0 0 chr13 24221663 24221688 -95523210 + AT_rich Low_complexity Low_complexity 1 25 0 1658 218 34 81 chr13 24222985 24223050 -95521848 - L1ME1 LINE L1 -2 6164 6097 2058 101 3 82 chr13 24223050 24223378 -95521520 - AluSq SINE Alu -11 302 1 1658 218 34 81 chr13 24223378 24223866 -95521032 - L1ME1 LINE L1 -69 6097 5637 336 304 31 12 chr13 24224408 24224569 -95520329 + MIR SINE MIR 79 242 -20 347 327 65 6 chr13 24224674 24224842 -95520056 - MIR SINE MIR -51 211 34 5923 132 21 7 chr13 24225666 24226705 -95518193 + L1PA13 LINE L1 4270 5347 -816 1892 148 22 29 chr13 24226705 24227016 -95517882 + AluJb SINE Alu 1 309 -3 5923 132 21 7 chr13 24227016 24227824 -95517074 + L1PA13 LINE L1 5347 6142 -21 411 21 0 0 chr13 24227824 24227872 -95517026 + (CA)n Simple_repeat Simple_repeat 2 49 0 1484 160 65 44 chr13 24228926 24229219 -95515679 + AluJo SINE Alu 3 301 -11 455 172 16 16 chr13 24229232 24229354 -95515544 + GA-rich Low_complexity Low_complexity 3 124 0 284 304 8 32 chr13 24229802 24229927 -95514971 + (TATATG)n Simple_repeat Simple_repeat 5 126 0 1248 227 50 59 chr13 24230530 24230988 -95513910 + L1ME1 LINE L1 5704 6157 -9 360 0 0 0 chr13 24231116 24231156 -95513742 + (CA)n Simple_repeat Simple_repeat 2 41 0 2184 111 3 7 chr13 24232247 24232544 -95512354 - AluSx SINE Alu -16 296 1 1350 105 51 43 chr13 24233184 24233281 -95511617 + L1MA3 LINE L1 6047 6142 -163 2321 101 0 0 chr13 24233281 24233578 -95511320 + AluSq SINE Alu 1 297 -16 1350 105 51 43 chr13 24233578 24233737 -95511161 + L1MA3 LINE L1 6142 6305 0 35 0 0 0 chr13 24233737 24233772 -95511126 + AT_rich Low_complexity Low_complexity 1 35 0 490 94 47 24 chr13 24235102 24235187 -95509711 - MER34 LTR ERV1 0 542 456 810 84 0 9 chr13 24235191 24235298 -95509600 + FLAM_A SINE Alu 24 129 -13 2159 183 27 5 chr13 24235298 24235740 -95509158 - MER34 LTR ERV1 -64 478 27 585 258 91 45 chr13 24236294 24236515 -95508383 - MIR SINE MIR 0 262 32 195 283 43 0 chr13 24237793 24237839 -95507059 + L2 LINE L2 363 410 -2904 2828 82 0 11 chr13 24238012 24238391 -95506507 - THE1C LTR MaLR 0 375 1 22 56 0 0 chr13 24239758 24239794 -95505104 + AT_rich Low_complexity Low_complexity 1 36 0 1860 167 0 26 chr13 24241522 24241827 -95503071 + AluJb SINE Alu 1 297 -15 1852 142 87 3 chr13 24242418 24242885 -95502013 - LTR31 LTR ERV1 -60 559 1 2406 189 17 14 chr13 24242923 24243847 -95501051 - L1M4 LINE L1 -477 5707 4786 1630 164 26 56 chr13 24244429 24244612 -95500286 - AluJo SINE Alu -16 296 124 2279 114 0 0 chr13 24244612 24244909 -95499989 + AluSx SINE Alu 1 297 -15 1630 164 26 56 chr13 24244909 24245030 -95499868 - AluJo SINE Alu -188 124 1 978 164 26 11 chr13 24245445 24245634 -95499264 + L1PA16 LINE L1 5959 6150 -16 291 208 0 52 chr13 24245689 24245766 -95499132 + L2 LINE L2 2330 2402 -912 184 294 56 86 chr13 24245797 24245994 -95498904 + L2 LINE L2 2826 3016 -256 414 263 26 51 chr13 24246002 24246158 -95498740 + L2 LINE L2 3160 3311 -2 26 30 0 0 chr13 24246870 24246903 -95497995 + AT_rich Low_complexity Low_complexity 1 33 0 23 54 0 0 chr13 24247668 24247705 -95497193 + AT_rich Low_complexity Low_complexity 1 37 0 1702 180 3 37 chr13 24247864 24248164 -95496734 + AluJb SINE Alu 1 290 -22 431 289 75 19 chr13 24248170 24248488 -95496410 - HAL1 LINE L1 -143 2364 2029 271 271 182 6 chr13 24248584 24248765 -95496133 - HAL1 LINE L1 -607 1900 1688 252 250 61 45 chr13 24248780 24248912 -95495986 + Charlie2 DNA MER1_type 2019 2152 -710 * 389 188 134 38 chr13 24248906 24249092 -95495806 + Charlie2 DNA MER1_type 2401 2604 -258 3136 62 60 0 chr13 24249093 24249526 -95495372 + L1PA10 LINE L1 5710 6168 0 267 250 56 0 chr13 24249526 24249598 -95495300 - MIR SINE MIR -157 105 30 220 254 0 36 chr13 24249624 24249679 -95495219 - L2 LINE L2 -103 3169 3117 719 92 46 35 chr13 24249679 24249853 -95495045 + (ATATG)n Simple_repeat Simple_repeat 4 179 0 1279 172 33 105 chr13 24249984 24250374 -95494524 + MLT2D LTR ERVL 1 362 -52 261 57 0 0 chr13 24250383 24250418 -95494480 + (CA)n Simple_repeat Simple_repeat 1 35 0 673 171 62 21 chr13 24250423 24250616 -95494282 + Charlie2 DNA MER1_type 2594 2794 -68 3766 186 64 30 chr13 24250641 24251029 -95493869 + L1MB3 LINE L1 4598 4971 -1212 1809 147 0 58 chr13 24251029 24251342 -95493556 + AluJb SINE Alu 1 295 -17 3766 186 64 30 chr13 24251342 24252486 -95492412 + L1MB3 LINE L1 4971 6173 -10 337 362 88 27 chr13 24252673 24253002 -95491896 + L2 LINE L2 2920 3268 -4 1613 181 57 10 chr13 24253978 24254276 -95490622 - AluJb SINE Alu 0 312 1 376 308 51 10 chr13 24254733 24254943 -95489955 + MIR SINE MIR 38 254 -8 293 359 0 0 chr13 24255064 24255156 -95489742 - L2 LINE L2 -19 3294 3203 212 175 0 0 chr13 24255946 24255986 -95488912 + T-rich Low_complexity Low_complexity 3 42 0 999 221 38 14 chr13 24257976 24258189 -95486709 - MER20 DNA MER1_type -1 218 1 245 275 190 16 chr13 24258704 24258951 -95485947 - L1MC/D LINE L1 -2265 5543 5254 267 312 135 18 chr13 24259330 24259500 -95485398 - L2 LINE L2 -369 2945 2756 24 0 0 0 chr13 24259714 24259738 -95485160 + AT_rich Low_complexity Low_complexity 1 24 0 399 254 53 77 chr13 24259820 24260158 -95484740 - HAL1b LINE L1 -841 507 178 2087 129 0 3 chr13 24260273 24260567 -95484331 - AluSx SINE Alu -19 293 1 2028 148 3 10 chr13 24261441 24261752 -95483146 - AluJo SINE Alu -1 311 3 1072 184 79 44 chr13 24262221 24262536 -95482362 + L1MA7 LINE L1 5966 6291 0 219 281 146 73 chr13 24262735 24262831 -95482067 - L2 LINE L2 -25 3247 3145 2259 98 0 16 chr13 24263391 24263707 -95481191 - AluSx SINE Alu -1 311 1 477 0 0 0 chr13 24265964 24266017 -95478881 + (TA)n Simple_repeat Simple_repeat 1 53 0 192 260 83 73 chr13 24266110 24266176 -95478722 - L2 LINE L2 0 3272 3206 344 306 87 35 chr13 24266176 24266306 -95478592 + MER5A DNA MER1_type 1 144 -45 1715 158 14 28 chr13 24266306 24266597 -95478301 - AluJb SINE Alu -14 298 12 344 306 87 35 chr13 24266597 24266639 -95478259 + MER5A DNA MER1_type 144 182 -7 523 229 76 111 chr13 24266921 24267318 -95477580 - L1MC4 LINE L1 -9 8033 7651 2350 93 3 0 chr13 24267507 24267808 -95477090 - AluY SINE Alu -9 302 1 2213 128 0 0 chr13 24267856 24268162 -95476736 + AluSx SINE Alu 1 306 -6 211 343 135 27 chr13 24269417 24269831 -95475067 + L2 LINE L2 2075 2533 -781 557 185 11 0 chr13 24269836 24269928 -95474970 - FLAM_A SINE Alu -49 93 1 263 287 37 29 chr13 24270228 24270364 -95474534 + Charlie2 DNA MER1_type 170 306 -2556 435 227 136 23 chr13 24270670 24270846 -95474052 + Charlie2a DNA MER1_type 1467 1662 -1200 1202 268 31 19 chr13 24270918 24271404 -95473494 + Charlie2a DNA MER1_type 1661 2152 -710 389 188 134 38 chr13 24271398 24271584 -95473314 + Charlie2a DNA MER1_type 2401 2604 -258 * 3136 62 60 0 chr13 24271585 24272018 -95472880 + L1PA10 LINE L1 5710 6168 0 267 250 56 0 chr13 24272018 24272090 -95472808 - MIR SINE MIR -157 105 30 220 254 0 36 chr13 24272116 24272171 -95472727 - L2 LINE L2 -103 3169 3117 755 84 34 50 chr13 24272171 24272350 -95472548 + (ATATG)n Simple_repeat Simple_repeat 4 179 0 1279 172 33 105 chr13 24272481 24272871 -95472027 + MLT2D LTR ERVL 1 362 -52 297 51 0 0 chr13 24272880 24272919 -95471979 + (CA)n Simple_repeat Simple_repeat 1 39 0 643 180 57 21 chr13 24272924 24273118 -95471780 + Charlie2a DNA MER1_type 2594 2794 -68 1394 212 40 52 chr13 24273143 24273534 -95471364 + L1M4 LINE L1 4598 4985 -1161 1809 147 0 58 chr13 24273534 24273847 -95471051 + AluJb SINE Alu 1 295 -17 1394 212 40 52 chr13 24273847 24273875 -95471023 + L1M4 LINE L1 4985 5012 -1134 659 303 87 73 chr13 24274002 24275032 -95469866 + L1MC4a LINE L1 4001 5045 -1101 405 270 1 0 chr13 24275223 24275368 -95469530 + L1M LINE L1 5277 5423 -868 687 319 60 45 chr13 24275380 24275975 -95468923 + L1MC4a LINE L1 5317 5920 -1888 1235 173 128 12 chr13 24275985 24276228 -95468670 - AluJo SINE Alu -30 282 12 180 0 0 0 chr13 24276276 24276296 -95468602 + (TG)n Simple_repeat Simple_repeat 2 21 0 1649 179 155 29 chr13 24277183 24277454 -95467444 - LTR54B LTR ERV1 -32 466 124 356 0 23 0 chr13 24277454 24277498 -95467400 + (TTTG)n Simple_repeat Simple_repeat 2 46 0 1649 179 155 29 chr13 24277498 24277640 -95467258 - LTR54B LTR ERV1 -374 124 1 261 273 34 23 chr13 24277951 24278039 -95466859 + L2 LINE L2 3184 3272 0 423 0 0 0 chr13 24278716 24278763 -95466135 + (CA)n Simple_repeat Simple_repeat 1 47 0 653 73 0 0 chr13 24280059 24280141 -95464757 + L1P LINE L1 2 83 -6063 1056 205 63 14 chr13 24283037 24283376 -95461522 - MSTD LTR MaLR 0 396 1 2231 104 19 0 chr13 24283685 24283992 -95460906 + AluSq SINE Alu 1 313 0 484 140 0 20 chr13 24283995 24284095 -95460803 + (GGAA)n Simple_repeat Simple_repeat 3 100 0 1700 218 19 14 chr13 24284653 24285016 -95459882 + MLT1A1 LTR MaLR 1 365 0 2265 106 0 0 chr13 24285529 24285821 -95459077 - AluSg SINE Alu -18 292 1 24 0 0 0 chr13 24286876 24286900 -95457998 + AT_rich Low_complexity Low_complexity 1 24 0 2391 90 3 0 chr13 24287186 24287487 -95457411 + AluSq SINE Alu 1 302 -11 417 305 89 39 chr13 24287503 24287785 -95457113 - L2 LINE L2 -35 3237 2942 335 200 0 0 chr13 24288906 24288966 -95455932 - MLT1J2 LTR MaLR -45 405 346 1694 255 30 30 chr13 24288984 24289517 -95455381 + MER74B LTR ERVL 56 588 -34 400 226 69 2 chr13 24289622 24289761 -95455137 - MLT1J2 LTR MaLR -229 180 36 2337 90 0 3 chr13 24292592 24292891 -95452007 + AluSx SINE Alu 1 298 -14 949 156 58 40 chr13 24293127 24293300 -95451598 - FRAM SINE Alu -1 175 1 1224 168 28 5 chr13 24293465 24293679 -95451219 + MER20 DNA MER1_type 1 219 0 837 130 0 3 chr13 24293988 24294211 -95450687 + AluSq SINE Alu 2 297 -16 477 243 56 21 chr13 24294220 24294364 -95450534 + MIR SINE MIR 73 221 -41 1972 127 28 11 chr13 24294406 24294689 -95450209 + AluSx SINE Alu 1 288 -24 222 37 0 0 chr13 24294689 24294716 -95450182 + (TA)n Simple_repeat Simple_repeat 1 27 0 288 266 108 29 chr13 24295516 24295620 -95449278 + L2 LINE L2 2392 2511 -803 1532 163 83 28 chr13 24295620 24295908 -95448990 - AluJo SINE Alu -8 304 1 288 266 108 29 chr13 24295908 24295942 -95448956 + L2 LINE L2 2511 2541 -773 726 150 92 0 chr13 24295972 24296092 -95448806 + MER3 DNA MER1_type 3 133 -76 4168 167 38 60 chr13 24296094 24296261 -95448637 - L1MB7 LINE L1 -8 6176 6007 2489 84 0 0 chr13 24296261 24296560 -95448338 + AluSx SINE Alu 1 299 -13 4168 167 38 60 chr13 24296560 24297569 -95447329 - L1MB7 LINE L1 -177 6007 5024 1538 185 19 0 chr13 24297569 24297839 -95447059 + L1PB4 LINE L1 5881 6155 -1 4168 167 38 60 chr13 24297839 24297872 -95447026 - L1MB7 LINE L1 -1160 5024 4992 816 147 78 11 chr13 24297878 24298069 -95446829 - L1MB4 LINE L1 -1 6179 5976 389 216 11 0 chr13 24298069 24298157 -95446741 + MER3 DNA MER1_type 121 209 0 559 306 76 20 chr13 24298173 24298634 -95446264 + L2 LINE L2 2595 3073 -240 1027 170 0 6 chr13 24298665 24298836 -95446062 - FRAM SINE Alu -10 166 1 2299 114 10 0 chr13 24298854 24299162 -95445736 - AluSx SINE Alu 0 312 2 476 257 131 23 chr13 24299172 24299347 -95445551 + L2 LINE L2 3119 3312 -1 1361 157 25 58 chr13 24300075 24300216 -95444682 + L1PA16 LINE L1 5896 6026 -140 2247 97 0 0 chr13 24300216 24300537 -95444361 + AluSg1 SINE Alu 2 322 0 1361 157 25 58 chr13 24300537 24300668 -95444230 + L1PA16 LINE L1 6026 6160 -6 205 171 0 0 chr13 24300850 24300885 -95444013 + A-rich Low_complexity Low_complexity 1 35 0 180 0 0 0 chr13 24301256 24301276 -95443622 + (TTGG)n Simple_repeat Simple_repeat 4 23 0 507 307 70 18 chr13 24302434 24302776 -95442122 - L1ME4a LINE L1 -52 6069 5710 588 241 69 46 chr13 24302797 24303058 -95441840 - L2 LINE L2 -588 2726 2460 438 281 131 14 chr13 24304449 24304670 -95440228 + MER115 DNA AcHobo 1 247 -446 229 290 121 40 chr13 24307494 24307651 -95437247 + MIR SINE MIR 32 196 -63 257 174 14 0 chr13 24307896 24307965 -95436933 + (CA)n Simple_repeat Simple_repeat 1 70 0 334 224 51 10 chr13 24307967 24308065 -95436833 + MER5A DNA MER1_type 88 189 0 2260 66 0 0 chr13 24310112 24310386 -95434512 + AluY SINE Alu 33 306 -5 4407 128 38 46 chr13 24310964 24311724 -95433174 - LTR1 LTR ERV1 0 785 32 566 271 181 52 chr13 24313314 24313739 -95431159 + MLT1K LTR MaLR 17 496 -92 1405 206 41 16 chr13 24314007 24314323 -95430575 - MER33 DNA MER1_type 0 324 1 2314 70 39 0 chr13 24314933 24315219 -95429679 - AluY SINE Alu -14 297 1 210 302 215 19 chr13 24315287 24315598 -95429300 + L2 LINE L2 2591 2962 -352 3098 179 41 80 chr13 24315792 24316556 -95428342 + L1MB2 LINE L1 5438 6171 0 25 0 0 0 chr13 24318310 24318335 -95426563 + AT_rich Low_complexity Low_complexity 1 25 0 1171 60 7 0 chr13 24319626 24319776 -95425122 - MER41A LTR ERV1 0 554 404 * 1924 89 4 4 chr13 24319774 24320033 -95424865 - MER41A LTR ERV1 -295 259 1 390 42 0 0 chr13 24322871 24322919 -95421979 + (GA)n Simple_repeat Simple_repeat 1 48 0 465 198 10 0 chr13 24323045 24323141 -95421757 + MER5A DNA MER1_type 9 105 -84 627 51 0 0 chr13 24324187 24324266 -95420632 + (ATG)n Simple_repeat Simple_repeat 1 79 0 239 289 48 0 chr13 24324347 24324430 -95420468 - MIR SINE MIR -135 127 41 1275 115 22 0 chr13 24324552 24324735 -95420163 + AluSq SINE Alu 121 307 -6 2374 108 0 0 chr13 24326398 24326705 -95418193 - AluSq SINE Alu -6 307 1 660 216 52 71 chr13 24328312 24328580 -95416318 + L1ME3A LINE L1 5903 6165 -5 2253 89 10 0 chr13 24328637 24328928 -95415970 - AluSq SINE Alu -19 294 1 2113 116 7 3 chr13 24329871 24330164 -95414734 + AluSp SINE Alu 1 294 -19 261 0 0 0 chr13 24330538 24330567 -95414331 + (TA)n Simple_repeat Simple_repeat 1 29 0 23 33 0 0 chr13 24330567 24330597 -95414301 + AT_rich Low_complexity Low_complexity 1 30 0 2320 99 0 3 chr13 24331173 24331476 -95413422 + AluSg SINE Alu 1 302 -8 2118 106 0 3 chr13 24332610 24332916 -95411982 - AluSx SINE Alu 0 305 1 2215 79 41 7 chr13 24333277 24333567 -95411331 - AluY SINE Alu -10 301 2 366 42 0 0 chr13 24333749 24333797 -95411101 + (TC)n Simple_repeat Simple_repeat 1 48 0 213 175 0 0 chr13 24333873 24333913 -95410985 + CT-rich Low_complexity Low_complexity 2 41 0 44786 37 5 1 chr13 24334341 24340470 -95404428 - L1PA4 LINE L1 0 6155 2 413 311 28 38 chr13 24340907 24341225 -95403673 - L2 LINE L2 -373 2941 2627 2614 181 71 68 chr13 24341317 24342037 -95402861 - MER72 LTR ERV1 0 722 1 34 55 0 0 chr13 24342759 24342814 -95402084 + AT_rich Low_complexity Low_complexity 1 55 0 186 240 56 104 chr13 24344042 24344167 -95400731 + L2 LINE L2 2203 2321 -993 297 0 0 0 chr13 24344232 24344265 -95400633 + (CA)n Simple_repeat Simple_repeat 1 33 0 675 120 0 0 chr13 24344318 24344443 -95400455 + AluSp/q SINE Alu 193 317 0 503 270 173 17 chr13 24344700 24344989 -95399909 + L2 LINE L2 2627 2960 -354 238 249 142 53 chr13 24345073 24345242 -95399656 + L2 LINE L2 3130 3313 0 357 310 7 45 chr13 24345244 24345290 -95399608 + MER5B DNA MER1_type 30 76 -102 1303 193 9 0 chr13 24345290 24345523 -95399375 - MER46A DNA MER2_type 0 236 2 357 310 7 45 chr13 24345523 24345631 -95399267 + MER5B DNA MER1_type 76 178 0 180 0 0 0 chr13 24346708 24346728 -95398170 + (TC)n Simple_repeat Simple_repeat 2 21 0 1991 69 3 73 chr13 24348250 24348539 -95396359 + AluSx SINE Alu 11 279 -33 353 125 0 0 chr13 24348542 24348590 -95396308 + AluS SINE Alu 230 277 -23 349 118 0 0 chr13 24348593 24348685 -95396213 + AluSc SINE Alu 230 321 0 1033 174 25 45 chr13 24350386 24350717 -95394181 + L1MA6 LINE L1 5997 6298 -2 1904 173 48 41 chr13 24350948 24351411 -95393487 - L1MB4 LINE L1 -39 6141 5676 21 0 0 0 chr13 24352215 24352236 -95392662 + AT_rich Low_complexity Low_complexity 1 21 0 3827 169 36 12 chr13 24353176 24353448 -95391450 + L1MA7 LINE L1 5509 5773 -518 369 0 0 0 chr13 24353448 24353489 -95391409 + (CA)n Simple_repeat Simple_repeat 2 42 0 3827 169 36 12 chr13 24353489 24353971 -95390927 + L1MA7 LINE L1 5773 6281 -10 213 266 121 32 chr13 24354213 24354337 -95390561 + MIR SINE MIR 15 149 -113 267 360 22 14 chr13 24355162 24355301 -95389597 + MIR3 SINE MIR 43 182 -26 279 290 117 61 chr13 24355316 24355744 -95389154 + L2 LINE L2 1931 2382 -932 582 268 199 35 chr13 24356558 24356961 -95387937 - LTR33A LTR ERVL 0 523 55 189 173 19 39 chr13 24357095 24357147 -95387751 + L2 LINE L2 3262 3312 -1 239 304 72 0 chr13 24357910 24357979 -95386919 - MIR3 SINE MIR -26 182 109 180 77 0 0 chr13 24358575 24358601 -95386297 + (TTCCC)n Simple_repeat Simple_repeat 2 27 0 299 308 76 22 chr13 24358717 24358914 -95385984 - MIR SINE MIR -54 208 4 1577 174 0 71 chr13 24361069 24361379 -95383519 - AluJo SINE Alu -23 289 2 1800 135 35 7 chr13 24362108 24362390 -95382508 + AluJb SINE Alu 21 310 -2 2232 103 3 22 chr13 24362628 24362939 -95381959 + AluSg SINE Alu 1 305 -5 2317 181 42 2 chr13 24365511 24365941 -95378957 - MLT1C LTR MaLR 0 467 21 2671 102 6 3 chr13 24365980 24366342 -95378556 + THE1B LTR MaLR 1 363 -1 2368 76 0 10 chr13 24366544 24366847 -95378051 + AluY SINE Alu 1 300 -11 2318 95 10 0 chr13 24367023 24367318 -95377580 - AluSq SINE Alu -15 298 1 341 333 26 19 chr13 24367734 24367890 -95377008 + L2 LINE L2 3116 3272 0 842 161 0 0 chr13 24368010 24368134 -95376764 + FLAM_C SINE Alu 1 124 -19 24 0 0 0 chr13 24368140 24368164 -95376734 + AT_rich Low_complexity Low_complexity 1 24 0 689 221 0 0 chr13 24370113 24370253 -95374645 + Tigger4(Zombi) DNA MER2_type 1 140 -2591 1504 125 141 4 chr13 24370869 24371125 -95373773 + AluJo SINE Alu 1 291 -21 438 305 155 29 chr13 24371442 24372045 -95372853 + L2 LINE L2 2632 3311 -2 1701 175 53 50 chr13 24372351 24372711 -95372187 + MER46B DNA MER2_type 1 236 0 2387 97 0 3 chr13 24373057 24373367 -95371531 + AluSq SINE Alu 1 309 -4 2125 115 0 26 chr13 24374143 24374447 -95370451 - AluSx SINE Alu -16 296 1 229 228 0 18 chr13 24374779 24374836 -95370062 + MIR SINE MIR 195 250 -12 307 325 76 30 chr13 24375714 24375951 -95368947 + MIR SINE MIR 9 256 -6 242 289 74 37 chr13 24376310 24376445 -95368453 - MIR SINE MIR -26 236 97 2028 170 84 5 chr13 24376730 24377124 -95367774 - MSTB LTR MaLR -1 425 1 204 200 0 0 chr13 24378617 24378672 -95366226 + T-rich Low_complexity Low_complexity 1 55 0 2416 63 0 0 chr13 24378863 24379164 -95365734 + AluY SINE Alu 4 304 -7 22 35 0 0 chr13 24379209 24379238 -95365660 + AT_rich Low_complexity Low_complexity 1 29 0 2133 117 0 0 chr13 24380135 24380435 -95364463 - AluSx SINE Alu -12 300 1 276 283 198 6 chr13 24382072 24382249 -95362649 + MIR SINE MIR 13 223 -39 344 266 99 17 chr13 24383397 24383618 -95361280 - L1ME2 LINE L1 -298 5866 5629 574 237 84 42 chr13 24383623 24383718 -95361180 - L1ME2 LINE L1 -913 5233 5143 2017 114 0 7 chr13 24383718 24384016 -95360882 - AluSx SINE Alu -16 296 1 574 237 84 42 chr13 24384016 24384182 -95360716 - L1ME2 LINE L1 -1003 5143 4961 1824 179 33 15 chr13 24384604 24384940 -95359958 + MER7A DNA MER2_type 2 341 -5 2019 104 35 0 chr13 24385518 24385807 -95359091 + AluSx SINE Alu 1 299 -13 1316 163 26 0 chr13 24385816 24386043 -95358855 + 7SLRNA srpRNA srpRNA 51 283 -37 26 0 0 0 chr13 24386062 24386088 -95358810 + AT_rich Low_complexity Low_complexity 1 26 0 468 277 54 14 chr13 24386111 24386259 -95358639 + MIR SINE MIR 24 177 -85 442 264 98 31 chr13 24387338 24387501 -95357397 - MIR SINE MIR -87 175 2 2138 115 0 0 chr13 24388035 24388340 -95356558 - AluSx SINE Alu -7 305 1 749 209 173 5 chr13 24389632 24389823 -95355075 - MIR SINE MIR -4 258 36 1158 256 33 39 chr13 24389828 24390191 -95354707 + MLT1A2 LTR MaLR 1 361 -13 1987 134 0 0 chr13 24391100 24391392 -95353506 - AluSx SINE Alu -20 292 1 23 0 0 0 chr13 24391972 24391995 -95352903 + AT_rich Low_complexity Low_complexity 1 23 0 550 176 0 0 chr13 24392012 24392114 -95352784 - HY1 scRNA scRNA -10 102 1 2690 223 55 18 chr13 24392252 24392920 -95351978 + L1ME2 LINE L1 5456 6148 -16 1459 179 36 17 chr13 24393663 24393964 -95350934 - AluJo SINE Alu -5 307 1 216 0 0 0 chr13 24394815 24394839 -95350059 + (A)n Simple_repeat Simple_repeat 1 24 0 12386 88 9 2 chr13 24394851 24396439 -95348459 + L1PA7 LINE L1 8 1606 -4855 16670 89 5 41 chr13 24396439 24399604 -95345294 + L1PA7 LINE L1 3338 6469 0 280 75 132 0 chr13 24400196 24400249 -95344649 - L1MA4A LINE L1 -5 6298 6239 401 296 68 14 chr13 24401001 24401221 -95343677 - L1ME4a LINE L1 -296 5825 5594 1002 197 0 5 chr13 24403154 24403347 -95341551 + AluJo SINE Alu 121 312 0 2339 84 0 3 chr13 24404406 24404716 -95340182 + AluSc SINE Alu 1 309 0 2145 99 3 3 chr13 24406170 24406463 -95338435 + AluSx SINE Alu 1 293 -19 184 311 94 28 chr13 24411014 24411120 -95333778 - L2 LINE L2 -2 3311 3199 300 269 180 30 chr13 24411822 24411989 -95332909 + MIR SINE MIR 40 231 -31 352 227 118 36 chr13 24415372 24415482 -95329416 + MIR SINE MIR 16 134 -74 2267 62 0 29 chr13 24416584 24416890 -95328008 + AluY SINE Alu 1 297 -14 382 269 32 118 chr13 24416892 24417360 -95327538 - L1MC5 LINE L1 -32 7929 7502 592 224 8 8 chr13 24417367 24417515 -95327383 - FLAM_A SINE Alu 0 142 6 218 259 24 35 chr13 24417618 24417703 -95327195 - MIR SINE MIR -62 146 63 2068 95 0 11 chr13 24418073 24418319 -95326579 - AluSg1 SINE Alu 0 305 61 180 0 0 0 chr13 24418319 24418339 -95326559 + (CCCCCA)n Simple_repeat Simple_repeat 2 21 0 2068 95 0 11 chr13 24418339 24418400 -95326498 - AluSg1 SINE Alu -244 61 1 231 36 0 0 chr13 24418923 24418951 -95325947 + (TTG)n Simple_repeat Simple_repeat 2 29 0 24 32 0 0 chr13 24418965 24418996 -95325902 + AT_rich Low_complexity Low_complexity 1 31 0 2326 48 3 0 chr13 24419952 24420242 -95324656 + AluY SINE Alu 1 291 -20 1864 203 60 21 chr13 24421146 24421580 -95323318 - MER39 LTR ERV1 0 707 257 298 136 17 71 chr13 24421553 24421654 -95323244 - MER39 LTR ERV1 -560 93 1 * 250 311 189 5 chr13 24421654 24421844 -95323054 - L2 LINE L2 -285 3028 2804 1018 184 0 6 chr13 24422017 24422191 -95322707 + FAM SINE Alu 1 173 -2 26 50 0 0 chr13 24422934 24422974 -95321924 + AT_rich Low_complexity Low_complexity 1 40 0 24 96 0 0 chr13 24423137 24423210 -95321688 + AT_rich Low_complexity Low_complexity 1 73 0 1816 136 0 14 chr13 24425245 24425540 -95319358 + AluJo SINE Alu 3 293 -19 1967 144 20 0 chr13 24425614 24425920 -95318978 + AluSx SINE Alu 1 312 0 276 317 38 32 chr13 24426728 24426914 -95317984 - MLT1L LTR MaLR 0 615 429 4577 133 22 13 chr13 24427353 24428128 -95316770 - L1MA9 LINE L1 0 6312 5531 21 36 0 0 chr13 24428325 24428353 -95316545 + AT_rich Low_complexity Low_complexity 1 28 0 806 238 161 45 chr13 24431478 24431924 -95312974 - L2 LINE L2 -1 3312 2815 3132 162 34 35 chr13 24432546 24433195 -95311703 - L1MD1 LINE L1 0 6636 5989 338 174 29 14 chr13 24433220 24433289 -95311609 - MLT1H LTR MaLR -54 495 426 505 113 12 0 chr13 24433307 24433387 -95311511 - L1MB7 LINE L1 -21 6163 6083 * 8449 219 46 81 chr13 24433380 24433981 -95310917 - L1MD1 LINE L1 -627 6009 5389 5257 9 0 0 chr13 24433981 24434560 -95310338 - L1PA2 LINE L1 -1 6154 5576 8449 219 46 81 chr13 24434560 24437597 -95307301 - L1MD1 LINE L1 -1247 5389 2504 5091 205 122 40 chr13 24437624 24437809 -95307089 - L1MD1 LINE L1 -4338 2202 2034 2121 127 0 13 chr13 24437809 24437985 -95306913 - AluSx SINE Alu -4 308 136 2283 110 0 0 chr13 24437985 24438276 -95306622 - AluSx SINE Alu -21 291 1 2121 127 0 13 chr13 24438276 24438407 -95306491 - AluSx SINE Alu -176 136 5 5091 205 122 40 chr13 24438407 24439877 -95305021 - L1MD1 LINE L1 -4506 2034 258 221 273 182 0 chr13 24440940 24441039 -95303859 + L2 LINE L2 3153 3269 -3 23 0 0 0 chr13 24441993 24442016 -95302882 + AT_rich Low_complexity Low_complexity 1 23 0 3967 185 51 30 chr13 24442158 24443288 -95301610 - L1MB5 LINE L1 -6 6168 5009 1196 154 24 12 chr13 24443292 24443538 -95301360 - L1MA7 LINE L1 0 6291 6043 2550 70 9 0 chr13 24443538 24443868 -95301030 + L1PA6 LINE L1 5821 6154 0 11831 165 43 9 chr13 24443868 24444141 -95300757 - L1MA7 LINE L1 -233 6058 5796 438 20 0 0 chr13 24444141 24444192 -95300706 + (TG)n Simple_repeat Simple_repeat 2 52 0 11831 165 43 9 chr13 24444192 24446945 -95297953 - L1MA7 LINE L1 -495 5796 2930 4683 224 31 27 chr13 24446946 24448221 -95296677 - L1MB5 LINE L1 -1130 5016 3737 307 289 110 46 chr13 24448871 24449217 -95295681 + L1MEd LINE L1 18 385 -5734 21 57 0 0 chr13 24450398 24450433 -95294465 + AT_rich Low_complexity Low_complexity 1 35 0 1335 280 112 27 chr13 24450450 24451042 -95293856 - MER115 DNA AcHobo -1 692 51 2258 110 3 0 chr13 24451076 24451376 -95293522 + AluSx SINE Alu 1 301 -11 233 351 30 8 chr13 24451452 24451583 -95293315 + MIR3 SINE MIR 64 197 -11 2077 168 37 0 chr13 24452437 24452811 -95292087 - MLT1B LTR MaLR 0 390 3 1928 149 7 14 chr13 24452944 24453240 -95291658 + AluJo SINE Alu 1 294 -18 248 308 17 0 chr13 24453923 24454040 -95290858 + G-rich Low_complexity Low_complexity 1 119 0 2290 117 3 0 chr13 24454685 24454994 -95289904 + AluSq SINE Alu 1 310 -3 438 229 208 0 chr13 24455411 24455523 -95289375 + MIR SINE MIR 31 118 -144 2192 187 17 17 chr13 24455523 24455982 -95288916 - LOR1b LTR ERV1 -2 459 1 438 229 208 0 chr13 24455982 24456061 -95288837 + MIR SINE MIR 118 262 0 191 368 80 6 chr13 24456063 24456226 -95288672 + MIR SINE MIR 66 240 -22 281 294 64 53 chr13 24458144 24458331 -95286567 - MIR3 SINE MIR -12 196 8 210 37 0 0 chr13 24459283 24459310 -95285588 + (TTCTG)n Simple_repeat Simple_repeat 3 29 0 764 196 82 23 chr13 24460013 24460232 -95284666 + MIR SINE MIR 31 262 0 2176 118 0 10 chr13 24460404 24460700 -95284198 + AluSx SINE Alu 1 293 -19 2001 127 0 3 chr13 24465398 24465723 -95279175 + AluSx SINE Alu 3 326 0 1992 125 35 0 chr13 24466208 24466496 -95278402 - AluSg SINE Alu -12 298 1 2091 117 11 3 chr13 24469445 24469727 -95275171 + AluSx SINE Alu 1 284 -28 216 0 0 0 chr13 24469727 24469751 -95275147 + (CAT)n Simple_repeat Simple_repeat 2 25 0 255 242 0 16 chr13 24470634 24470696 -95274202 + MIR SINE MIR 200 260 -2 25 31 0 0 chr13 24471492 24471524 -95273374 + AT_rich Low_complexity Low_complexity 1 32 0 1971 125 24 7 chr13 24472079 24472366 -95272532 - AluSx SINE Alu -11 301 10 291 163 0 0 chr13 24472520 24472569 -95272329 + L2 LINE L2 3264 3312 -1 1672 158 49 3 chr13 24472617 24472902 -95271996 + AluJo SINE Alu 1 298 -14 634 159 146 13 chr13 24473291 24473442 -95271456 - MLT1B LTR MaLR -219 171 1 981 157 120 0 chr13 24473659 24473850 -95271048 - L1MB5 LINE L1 0 6174 5961 716 171 8 16 chr13 24473861 24473984 -95270914 - FLAM_C SINE Alu -21 122 1 3568 166 35 12 chr13 24473984 24474720 -95270178 - L1MB5 LINE L1 -212 5972 5223 24 32 0 0 chr13 24475083 24475114 -95269784 + AT_rich Low_complexity Low_complexity 1 31 0 24 32 0 0 chr13 24475485 24475516 -95269382 + AT_rich Low_complexity Low_complexity 1 31 0 342 0 0 0 chr13 24477192 24477230 -95267668 + (TG)n Simple_repeat Simple_repeat 2 39 0 2198 121 0 0 chr13 24478776 24479073 -95265825 - AluSx SINE Alu -15 297 1 225 282 0 127 chr13 24479751 24479805 -95265093 + L3 LINE CR1 1480 1539 -38 1167 197 51 91 chr13 24479805 24479978 -95264920 + MER58B DNA MER1_type 2 180 -2240 2435 53 3 41 chr13 24479978 24480297 -95264601 + AluY SINE Alu 1 307 -4 1167 197 51 91 chr13 24480297 24480433 -95264465 + MER58B DNA MER1_type 180 298 -2122 1679 157 3 39 chr13 24480433 24480745 -95264153 - AluJo SINE Alu -11 301 1 1167 197 51 91 chr13 24480745 24480784 -95264114 + MER58B DNA MER1_type 298 337 -4 225 282 0 127 chr13 24480784 24480839 -95264059 + L3 LINE CR1 1539 1575 -2 1941 134 13 10 chr13 24482351 24482658 -95262240 + AluSx SINE Alu 1 308 -4 261 139 0 0 chr13 24484944 24484987 -95259911 + (A)n Simple_repeat Simple_repeat 1 43 0 198 188 0 0 chr13 24487227 24487259 -95257639 + MIR SINE MIR 221 252 -10 4059 128 44 23 chr13 24487267 24487833 -95257065 + L1MA4 LINE L1 5597 6181 -119 2216 115 3 0 chr13 24487833 24488137 -95256761 + AluSg SINE Alu 1 305 -5 4059 128 44 23 chr13 24488137 24488255 -95256643 + L1MA4 LINE L1 6181 6295 -5 648 191 63 74 chr13 24489308 24489356 -95255542 - MER5A DNA MER1_type -2 187 140 2065 146 0 0 chr13 24489356 24489658 -95255240 + AluJb SINE Alu 1 302 -10 648 191 63 74 chr13 24489658 24489798 -95255100 - MER5A DNA MER1_type -49 140 1 1302 163 65 0 chr13 24490047 24490164 -95254734 + AluJo SINE Alu 1 109 -203 423 0 0 0 chr13 24490164 24490211 -95254687 + (TAAA)n Simple_repeat Simple_repeat 2 48 0 1302 163 65 0 chr13 24490211 24490308 -95254590 + AluJo SINE Alu 109 229 -83 268 250 0 0 chr13 24490506 24490558 -95254340 + L1ME2 LINE L1 6097 6148 -16 1071 167 162 9 chr13 24490582 24490792 -95254106 + AluY SINE Alu 44 285 -26 1570 162 42 7 chr13 24490823 24491107 -95253791 + AluJb SINE Alu 1 294 -18 2515 80 0 0 chr13 24492532 24492843 -95252055 - AluSx SINE Alu -1 311 1 243 0 0 0 chr13 24493032 24493059 -95251839 + (GA)n Simple_repeat Simple_repeat 2 28 0 759 156 0 0 chr13 24494197 24494329 -95250569 + FRAM SINE Alu 38 169 0 2280 95 0 7 chr13 24495123 24495417 -95249481 + AluSg SINE Alu 1 292 -18 394 271 54 8 chr13 24496416 24496545 -95248353 - L2 LINE L2 -52 3261 3127 354 366 21 7 chr13 24497093 24497235 -95247663 + MIR SINE MIR 22 165 -97 2342 162 80 2 chr13 24497427 24497865 -95247033 - LOR1a LTR ERV1 -25 472 1 2039 120 28 0 chr13 24497927 24498210 -95246688 - AluSq SINE Alu -22 291 1 584 128 43 11 chr13 24498242 24498336 -95246562 - LTR12 LTR ERV1 -229 485 389 329 147 59 88 chr13 24498336 24498438 -95246460 - LTR30 LTR ERV1 -79 643 379 528 206 39 25 chr13 24498439 24498640 -95246258 - LTR12 LTR ERV1 -429 1475 96 247 250 0 0 chr13 24498640 24498692 -95246206 - LTR30 LTR ERV1 -670 52 1 227 301 204 0 chr13 24498738 24498831 -95246067 - L2 LINE L2 -38 3234 3123 394 146 0 0 chr13 24498845 24498913 -95245985 - MLT1G1 LTR MaLR -6 589 476 794 194 0 8 chr13 24498924 24499058 -95245840 + FLAM_A SINE Alu 1 133 0 2667 161 60 39 chr13 24499067 24499637 -95245261 + L1MB3 LINE L1 5595 6176 -7 758 245 155 49 chr13 24499640 24499758 -95245140 - MLT1H1 LTR MaLR -55 540 436 1227 213 135 27 chr13 24499758 24500092 -95244806 + MLT1A2 LTR MaLR 1 370 -4 758 245 155 49 chr13 24500092 24500420 -95244478 - MLT1H1 LTR MaLR -159 436 3 2080 110 3 64 chr13 24501048 24501375 -95243523 - AluSq SINE Alu -2 311 5 1880 185 73 0 chr13 24501993 24502333 -95242565 - MER47A DNA MER2_type 0 366 2 225 280 75 65 chr13 24502405 24502498 -95242400 - L2 LINE L2 -33 3239 3146 2047 138 7 0 chr13 24502717 24503014 -95241884 + AluSq SINE Alu 1 299 -14 205 278 139 78 chr13 24503146 24503326 -95241572 - MIR SINE MIR -49 213 23 1647 170 0 55 chr13 24503349 24503661 -95241237 + AluJo SINE Alu 1 295 -17 432 228 304 35 chr13 24503927 24504423 -95240475 + LTR50 LTR ERVL 1 758 -37 233 176 77 66 chr13 24504428 24504519 -95240379 + L1ME LINE L1 5582 5673 -497 1442 103 0 10 chr13 24504525 24504752 -95240146 - AluSq SINE Alu 0 317 93 641 243 0 0 chr13 24505890 24506026 -95238872 + MIR SINE MIR 122 257 -5 285 355 13 26 chr13 24506229 24506384 -95238514 + L2 LINE L2 3159 3311 -2 433 235 154 15 chr13 24506726 24506862 -95238036 - MIR3 SINE MIR -20 188 34 713 198 0 0 chr13 24507994 24508110 -95236788 + FLAM_A SINE Alu 8 123 -19 214 313 214 10 chr13 24509290 24509482 -95235416 - L2 LINE L2 -1 3312 3082 1341 280 123 23 chr13 24512360 24513025 -95231873 + HAL1 LINE L1 1619 2350 -157 1219 169 9 144 chr13 24513331 24513679 -95231219 + AluJo SINE Alu 2 302 0 494 193 17 8 chr13 24514958 24515145 -95229753 - MER8 DNA MER2_type 0 239 8 1419 181 11 22 chr13 24515696 24515973 -95228925 + AluJb SINE Alu 33 306 -6 1559 170 30 22 chr13 24516197 24516467 -95228431 + AluSx SINE Alu 1 272 -40 22 35 0 0 chr13 24517605 24517634 -95227264 + AT_rich Low_complexity Low_complexity 1 29 0 21 36 0 0 chr13 24518064 24518092 -95226806 + AT_rich Low_complexity Low_complexity 1 28 0 2426 72 0 28 chr13 24518404 24518724 -95226174 - AluY SINE Alu 0 311 1 514 238 159 9 chr13 24518725 24518939 -95225959 - L1M4 LINE L1 -3744 2402 2157 243 192 0 39 chr13 24519113 24519165 -95225733 - MER3 DNA MER1_type 0 209 160 2752 238 31 14 chr13 24519620 24520329 -95224569 + MER54A LTR ERVL 179 899 -2 435 218 22 3 chr13 24520330 24520435 -95224463 - L1ME2 LINE L1 -324 5840 5737 440 272 6 31 chr13 24520493 24520655 -95224243 - L1ME2 LINE L1 -413 5753 5596 201 39 0 0 chr13 24520661 24520687 -95224211 + (TTAA)n Simple_repeat Simple_repeat 3 28 0 1330 235 129 56 chr13 24520795 24521087 -95223811 - L1ME3A LINE L1 -135 6035 5766 1647 186 0 20 chr13 24521087 24521388 -95223510 - AluJo SINE Alu -16 296 2 1330 235 129 56 chr13 24521388 24521739 -95223159 - L1ME3A LINE L1 -404 5766 5319 736 245 108 58 chr13 24521780 24521986 -95222912 - L1ME3A LINE L1 -2828 3318 3124 1647 189 3 3 chr13 24521986 24522287 -95222611 - AluJb SINE Alu -11 301 1 736 245 108 58 chr13 24522287 24522619 -95222279 - L1ME3A LINE L1 -3022 3124 2753 736 197 0 8 chr13 24523078 24523205 -95221693 - FLAM_C SINE Alu -16 127 2 200 308 0 33 chr13 24523454 24523545 -95221353 + (CATATA)n Simple_repeat Simple_repeat 2 89 0 2185 103 31 0 chr13 24523560 24523851 -95221047 - AluSc SINE Alu -9 300 1 357 168 107 92 chr13 24523855 24523986 -95220912 - L1MC4a LINE L1 -1869 5939 5807 1163 254 84 25 chr13 24524189 24524648 -95220250 + MLT1H1 LTR MaLR 2 452 -103 486 221 64 7 chr13 24524798 24524938 -95219960 - MIR SINE MIR -98 164 17 2132 113 0 0 chr13 24525080 24525373 -95219525 + AluJb SINE Alu 1 293 -19 1931 127 74 0 chr13 24525441 24525725 -95219173 + AluSx SINE Alu 3 307 -5 34 0 0 0 chr13 24526413 24526447 -95218451 + AT_rich Low_complexity Low_complexity 1 34 0 1630 190 80 131 chr13 24527684 24528119 -95216779 - L1MC4 LINE L1 -89 7953 7560 1875 136 26 19 chr13 24528119 24528427 -95216471 - AluJb SINE Alu -2 310 1 1630 190 80 131 chr13 24528427 24528632 -95216266 - L1MC4 LINE L1 -482 7560 7346 1594 180 0 33 chr13 24529256 24529556 -95215342 - AluJo SINE Alu -22 290 1 35 41 0 0 chr13 24532124 24532173 -95212725 + AT_rich Low_complexity Low_complexity 1 49 0 21 0 0 0 chr13 24532231 24532252 -95212646 + AT_rich Low_complexity Low_complexity 1 21 0 201 147 0 0 chr13 24532559 24532593 -95212305 + (CATATA)n Simple_repeat Simple_repeat 5 38 0 2307 105 0 0 chr13 24533775 24534071 -95210827 - AluSx SINE Alu -16 296 1 237 132 0 0 chr13 24534106 24534144 -95210754 + (T)n Simple_repeat Simple_repeat 1 38 0 25 51 0 0 chr13 24534660 24534699 -95210199 + AT_rich Low_complexity Low_complexity 1 39 0 280 394 83 19 chr13 24534784 24535147 -95209751 + L2 LINE L2 2883 3268 -4 1923 113 30 0 chr13 24535383 24535649 -95209249 + AluSx SINE Alu 1 274 -38 333 224 24 0 chr13 24535656 24535741 -95209157 + L1MC4 LINE L1 6614 6700 -1342 195 129 0 0 chr13 24535743 24535774 -95209124 + (TA)n Simple_repeat Simple_repeat 1 31 0 613 264 80 45 chr13 24535774 24535853 -95209045 + L1MEd LINE L1 928 1003 -5263 2248 115 0 7 chr13 24535853 24536158 -95208740 + AluSx SINE Alu 1 303 -9 613 264 80 45 chr13 24536158 24536481 -95208417 + L1MEd LINE L1 1003 1393 -4873 3186 186 31 5 chr13 24536916 24537529 -95207369 - L1MB4 LINE L1 -1 6179 5551 1069 167 45 32 chr13 24537531 24537752 -95207146 - L1MB4 LINE L1 -698 5482 5259 2194 138 0 0 chr13 24538023 24538327 -95206571 + AluSx SINE Alu 1 304 -8 829 315 15 11 chr13 24538521 24538781 -95206117 - MIR SINE MIR -1 261 1 1508 190 28 24 chr13 24539717 24539783 -95205115 + MER45B DNA AcHobo 38 102 -938 2154 104 20 7 chr13 24539783 24540081 -95204817 - AluSq SINE Alu -11 302 1 1508 190 28 24 chr13 24540081 24540303 -95204595 + MER45B DNA AcHobo 102 327 -713 573 128 12 0 chr13 24540303 24540389 -95204509 + L1M3 LINE L1 5587 5673 -510 788 101 335 21 chr13 24540389 24540577 -95204321 + MER45B DNA AcHobo 790 1036 -4 495 250 0 0 chr13 24540579 24540679 -95204219 + L1ME LINE L1 5523 5622 -544 200 136 68 0 chr13 24541994 24542038 -95202860 + A-rich Low_complexity Low_complexity 1 47 0 498 332 94 0 chr13 24542302 24542525 -95202373 - MIR SINE MIR -8 254 11 184 263 0 0 chr13 24542638 24542676 -95202222 + L3b LINE CR1 1200 1237 -346 1141 284 83 43 chr13 24542823 24543057 -95201841 + LTR16B LTR ERVL 1 224 -240 2195 52 33 4 chr13 24543057 24543353 -95201545 + AluY SINE Alu 1 304 0 1141 284 83 43 chr13 24543353 24543561 -95201337 + LTR16B LTR ERVL 224 462 -2 2441 86 0 3 chr13 24543591 24543904 -95200994 + AluSx SINE Alu 1 312 0 193 340 0 0 chr13 24544677 24544727 -95200171 + MIR SINE MIR 64 113 -149 1920 132 17 20 chr13 24545109 24545405 -95199493 + AluJb SINE Alu 1 295 -17 346 280 347 19 chr13 24546110 24546230 -95198668 - L2 LINE L2 0 3272 3193 1111 175 123 32 chr13 24546230 24546482 -95198416 + ORSL DNA AcHobo 1 275 0 346 280 347 19 chr13 24546482 24546629 -95198269 - L2 LINE L2 -79 3193 2917 245 374 34 11 chr13 24547295 24547474 -95197424 - L2 LINE L2 -899 2415 2233 3119 195 33 0 chr13 24547476 24548020 -95196878 + MER68 LTR ERV1 1 562 0 218 291 13 38 chr13 24550044 24550123 -95194775 + MIR SINE MIR 3 79 -183 2282 104 0 3 chr13 24550854 24551161 -95193737 + AluSg SINE Alu 1 306 -4 211 360 47 23 chr13 24551460 24551632 -95193266 + L2 LINE L2 2612 2787 -527 253 194 163 51 chr13 24552014 24552112 -95192786 + L2 LINE L2 3204 3312 -1 25 65 0 0 chr13 24553007 24553053 -95191845 + AT_rich Low_complexity Low_complexity 1 46 0 662 268 28 6 chr13 24555543 24555722 -95189176 + MIR SINE MIR 79 261 -1 389 342 0 0 chr13 24555736 24555856 -95189042 + L2 LINE L2 3178 3297 -16 239 214 0 71 chr13 24555858 24555928 -95188970 - U4 snRNA snRNA -80 65 1 2201 102 0 7 chr13 24556050 24556358 -95188540 + AluSg SINE Alu 1 306 0 344 266 0 0 chr13 24556824 24556903 -95187995 + MLT1J2 LTR MaLR 84 162 -288 1196 185 19 0 chr13 24556984 24557189 -95187709 + MER3 DNA MER1_type 1 209 0 247 172 184 35 chr13 24557239 24557326 -95187572 + MLT1J1 LTR MaLR 347 446 0 31 44 0 0 chr13 24558170 24558215 -95186683 + AT_rich Low_complexity Low_complexity 1 45 0 283 330 34 11 chr13 24559945 24560033 -95184865 + MER5B DNA MER1_type 27 116 -62 1271 122 185 4 chr13 24562048 24562286 -95182612 - AluJo SINE Alu -17 285 5 237 207 276 11 chr13 24563014 24563101 -95181797 - L2 LINE L2 0 3313 3204 194 361 74 9 chr13 24563157 24563265 -95181633 + L2 LINE L2 3118 3232 -40 25 51 0 0 chr13 24564097 24564136 -95180762 + AT_rich Low_complexity Low_complexity 1 39 0 2370 100 0 0 chr13 24564301 24564600 -95180298 + AluSc SINE Alu 1 299 -10 2157 146 17 14 chr13 24564760 24565117 -95179781 - L1MB7 LINE L1 -9 6175 5818 813 273 174 28 chr13 24565208 24565604 -95179294 - LTR16A1 LTR ERVL -1 456 3 2699 306 77 43 chr13 24565688 24568034 -95176864 - ERVL LTR ERVL -90 4906 2808 371 236 47 8 chr13 24568066 24568193 -95176705 - Charlie5 DNA MER1_type -85 2527 2396 23 33 0 0 chr13 24569916 24569946 -95174952 + AT_rich Low_complexity Low_complexity 1 30 0 2487 59 0 34 chr13 24570512 24570834 -95174064 - AluY SINE Alu 0 311 1 205 170 57 38 chr13 24571014 24571067 -95173831 + L2 LINE L2 3207 3260 -12 2139 142 3 0 chr13 24571303 24571613 -95173285 + AluSx SINE Alu 1 311 -1 467 209 35 61 chr13 24572567 24572682 -95172216 + FLAM_A SINE Alu 3 114 -19 21 0 0 0 chr13 24572685 24572706 -95172192 + AT_rich Low_complexity Low_complexity 1 21 0 284 312 72 0 chr13 24573254 24573379 -95171519 + L2 LINE L2 3168 3301 -12 1642 120 84 22 chr13 24573505 24573779 -95171119 + AluSq SINE Alu 1 291 -22 216 343 135 19 chr13 24574065 24574272 -95170626 + L2 LINE L2 2127 2357 -957 1128 276 138 29 chr13 24575238 24575788 -95169110 - MLT1L LTR MaLR -3 612 3 265 217 42 25 chr13 24575797 24575917 -95168981 + (TATAA)n Simple_repeat Simple_repeat 4 125 0 26 0 0 0 chr13 24575955 24575981 -95168917 + AT_rich Low_complexity Low_complexity 1 26 0 1747 136 0 0 chr13 24576054 24576297 -95168601 + AluSx SINE Alu 1 243 -69 638 135 0 0 chr13 24576297 24576386 -95168512 - AluS SINE Alu -222 90 2 363 265 44 37 chr13 24576425 24576561 -95168337 + L1ME LINE L1 5672 5808 -313 1912 264 39 34 chr13 24576999 24577587 -95167311 - MLT1E LTR MaLR -2 591 1 410 308 65 55 chr13 24578464 24578772 -95166126 + MLT1J2 LTR MaLR 21 331 -119 1844 142 7 4 chr13 24579358 24579632 -95165266 + AluSq SINE Alu 31 305 -8 187 43 0 0 chr13 24579964 24579987 -95164911 + (TTTA)n Simple_repeat Simple_repeat 2 172 0 1893 164 0 3 chr13 24579987 24580271 -95164627 - AluJb SINE Alu -6 306 1 586 266 0 0 chr13 24580865 24580978 -95163920 - MER81 DNA DNA -1 113 1 1890 138 20 20 chr13 24581105 24581402 -95163496 + AluJo SINE Alu 1 297 -15 2409 53 0 0 chr13 24582345 24582670 -95162228 - AluY SINE Alu 0 325 1 691 312 118 30 chr13 24583161 24583805 -95161093 - L1ME4a LINE L1 -96 6025 5314 1726 228 64 67 chr13 24584692 24585382 -95159516 - L1ME4a LINE L1 -1099 5047 4360 * 7061 241 73 43 chr13 24585373 24585704 -95159194 - L1MEc LINE L1 -1542 4673 4353 1899 185 10 31 chr13 24585704 24586094 -95158804 - L1MB7 LINE L1 0 6184 5803 7061 241 73 43 chr13 24586094 24586338 -95158560 - L1MEc LINE L1 -1862 4353 4118 2036 100 57 0 chr13 24586338 24586617 -95158281 - AluY SINE Alu -16 295 1 7061 241 73 43 chr13 24586617 24588324 -95156574 - L1MEc LINE L1 -2097 4118 2463 599 169 16 0 chr13 24588324 24588448 -95156450 - L1MB2 LINE L1 -2 6169 6044 7061 241 73 43 chr13 24588448 24588610 -95156288 - L1MEc LINE L1 -3752 2463 2307 1808 161 0 7 chr13 24588610 24588896 -95156002 - AluSx SINE Alu -26 286 3 7061 241 73 43 chr13 24588896 24590389 -95154509 - L1MEc LINE L1 -3908 2307 656 740 132 8 0 chr13 24590421 24590438 -95154460 - L1MB7 LINE L1 -309 5875 5860 1626 119 5 0 chr13 24590438 24590657 -95154241 + AluSg/x SINE Alu 73 292 -20 740 132 8 0 chr13 24590657 24590773 -95154125 - L1MB7 LINE L1 -324 5860 5759 244 281 173 43 chr13 24592164 24592303 -95152595 - MER5B DNA MER1_type -1 177 21 300 207 12 73 chr13 24593093 24593175 -95151723 + MER5B DNA MER1_type 2 78 -100 440 199 53 53 chr13 24593206 24593297 -95151601 - MER5A DNA MER1_type -58 131 38 4269 119 39 2 chr13 24593297 24593909 -95150989 + MER41B LTR ERV1 1 635 0 440 199 53 53 chr13 24593909 24593948 -95150950 - MER5A DNA MER1_type -150 39 1 210 179 26 0 chr13 24594015 24594054 -95150844 + CT-rich Low_complexity Low_complexity 1 40 0 2263 97 3 0 chr13 24594379 24594669 -95150229 - AluSx SINE Alu -21 291 1 806 185 23 0 chr13 24594992 24595165 -95149733 + MER69 DNA AcHobo 2344 2520 -6 283 262 78 48 chr13 24596073 24596176 -95148722 - MIR SINE MIR -80 128 23 432 284 12 8 chr13 24596180 24596312 -95148586 + MIR SINE MIR 13 147 -62 4590 257 102 26 chr13 24596550 24598375 -95146523 - L2 LINE L2 -1 3312 1357 1447 176 68 3 chr13 24599222 24599529 -95145369 - L1MB3 LINE L1 0 6183 5857 2131 138 0 0 chr13 24599835 24600132 -95144766 + AluSx SINE Alu 1 297 -15 13984 132 23 121 chr13 24600142 24601034 -95143864 + L1P LINE L1 12 990 -5156 2463 28 42 0 chr13 24601034 24601323 -95143575 + AluY SINE Alu 2 302 -9 13984 132 23 121 chr13 24601323 24603568 -95141330 + L1P LINE L1 990 2842 -3304 812 87 0 0 chr13 24603568 24603671 -95141227 - AluSq/x SINE Alu -210 103 1 197 159 43 14 chr13 24603906 24603975 -95140923 + (TA)n Simple_repeat Simple_repeat 2 72 0 212 332 75 83 chr13 24604487 24604885 -95140013 + L2 LINE L2 2872 3266 -6 529 169 12 0 chr13 24605361 24605444 -95139454 + AluJ/FLAM SINE Alu 1 84 -228 794 249 98 87 chr13 24605449 24605899 -95138999 + L2 LINE L2 2691 3134 -179 207 0 0 0 chr13 24605899 24605922 -95138976 + (TTG)n Simple_repeat Simple_repeat 2 24 0 2287 102 0 3 chr13 24605924 24606218 -95138680 - AluSq SINE Alu -20 293 1 794 249 98 87 chr13 24606218 24606359 -95138539 + L2 LINE L2 3134 3300 -13 280 293 9 66 chr13 24606437 24606543 -95138355 + MIR SINE MIR 8 107 -155 7853 41 2 2 chr13 24606742 24607708 -95137190 + L1PA5 LINE L1 5191 6153 -1 408 231 192 51 chr13 24607880 24607959 -95136939 - MIR SINE MIR -22 240 173 1857 143 32 0 chr13 24607959 24608239 -95136659 - AluJo SINE Alu -9 303 15 408 231 192 51 chr13 24608239 24608315 -95136583 - MIR SINE MIR -89 173 63 188 319 201 59 chr13 24609368 24609622 -95135276 - L2 LINE L2 0 3272 2983 1972 132 0 23 chr13 24609764 24610067 -95134831 + AluSx SINE Alu 1 296 -16 2109 110 48 0 chr13 24610959 24611250 -95133648 - AluSq SINE Alu -8 305 1 635 280 108 26 chr13 24611297 24611529 -95133369 - MIR SINE MIR -3 259 9 257 271 66 66 chr13 24612473 24612624 -95132274 - L2 LINE L2 -2 3311 3161 558 0 0 0 chr13 24612650 24612712 -95132186 + (TATTG)n Simple_repeat Simple_repeat 5 66 0 1974 154 3 0 chr13 24612712 24612997 -95131901 - AluSx SINE Alu -26 286 1 324 232 111 0 chr13 24613513 24613612 -95131286 - MIR3 SINE MIR -41 167 58 183 80 0 0 chr13 24614015 24614040 -95130858 + (TGAA)n Simple_repeat Simple_repeat 1 25 0 2346 81 0 3 chr13 24614263 24614559 -95130339 - AluY SINE Alu -16 295 1 1921 66 49 0 chr13 24615792 24616035 -95128863 + AluY SINE Alu 45 299 -12 513 315 81 20 chr13 24616192 24616565 -95128333 - L2 LINE L2 -184 3088 2680 2027 101 0 7 chr13 24617696 24617972 -95126926 + AluSc SINE Alu 1 274 -35 1329 158 0 0 chr13 24618214 24618417 -95126481 - AluSg/x SINE Alu -39 273 71 890 127 35 0 chr13 24618451 24618593 -95126305 - FRAM SINE Alu -4 172 26 1165 170 106 13 chr13 24618601 24618836 -95126062 + AluJo SINE Alu 46 302 -10 372 240 173 61 chr13 24619464 24619776 -95125122 + L1MEd LINE L1 598 944 -5175 1883 109 30 8 chr13 24619788 24620055 -95124843 + AluSx SINE Alu 2 274 -38 269 218 23 23 chr13 24620056 24620143 -95124755 + L1MC4 LINE L1 6616 6702 -1340 619 265 81 42 chr13 24620158 24620237 -95124661 + L1MEd LINE L1 928 1003 -5263 2298 115 0 6 chr13 24620237 24620550 -95124348 + AluSx SINE Alu 1 311 -1 619 265 81 42 chr13 24620550 24620872 -95124026 + L1MEd LINE L1 1003 1393 -4873 3287 179 31 5 chr13 24621307 24621920 -95122978 - L1MB4 LINE L1 -1 6179 5551 1049 172 45 32 chr13 24621922 24622143 -95122755 - L1MB4 LINE L1 -698 5482 5259 2194 138 0 0 chr13 24622414 24622718 -95122180 + AluSx SINE Alu 1 304 -8 829 315 15 11 chr13 24622912 24623172 -95121726 - MIR SINE MIR -1 261 1 475 257 29 15 chr13 24624327 24624463 -95120435 + MIR SINE MIR 32 169 -93 31 18 0 53 chr13 24624592 24624617 -95120281 + AT_rich Low_complexity Low_complexity 1 26 -28 1941 149 0 0 chr13 24624617 24624906 -95119992 - AluSx SINE Alu -23 289 1 31 18 0 53 chr13 24624906 24624937 -95119961 + AT_rich Low_complexity Low_complexity 26 54 0 2262 106 0 0 chr13 24625470 24625762 -95119136 + AluSx SINE Alu 1 292 -20 22 35 0 0 chr13 24625935 24625964 -95118934 + AT_rich Low_complexity Low_complexity 1 29 0 2304 92 0 3 chr13 24626340 24626634 -95118264 - AluSx SINE Alu -19 293 1 288 320 86 68 chr13 24626786 24627183 -95117715 + L2 LINE L2 2829 3232 -40 219 109 22 22 chr13 24627339 24627385 -95117513 + A-rich Low_complexity Low_complexity 2 47 0 2359 45 3 58 chr13 24627459 24627772 -95117126 - AluY SINE Alu -15 296 1 198 0 0 0 chr13 24627805 24627827 -95117071 + (A)n Simple_repeat Simple_repeat 1 22 0 2269 100 0 7 chr13 24628827 24629136 -95115762 + AluSx SINE Alu 1 307 -5 908 211 11 16 chr13 24630004 24630194 -95114704 - MER5A DNA MER1_type 0 189 1 4888 230 66 17 chr13 24630368 24631953 -95112945 - L1MDa LINE L1 -4723 1817 17 24 0 0 0 chr13 24632068 24632092 -95112806 + AT_rich Low_complexity Low_complexity 1 24 0 2374 173 22 7 chr13 24632864 24633281 -95111617 + MSTB LTR MaLR 4 426 0 2022 255 35 31 chr13 24633972 24634493 -95110405 + L1M4 LINE L1 27 549 -5993 4066 234 97 31 chr13 24634522 24636003 -95108895 + L1M4 LINE L1 973 2550 -4096 304 346 19 25 chr13 24636003 24636165 -95108733 - L1M4 LINE L1 -1313 4833 4673 2097 223 71 30 chr13 24636165 24636726 -95108172 + MER74B LTR ERVL 29 612 -10 739 270 11 22 chr13 24636737 24637004 -95107894 - L1M4 LINE L1 -1498 4648 4385 627 228 90 0 chr13 24637016 24637161 -95107737 - FRAM SINE Alu -6 170 13 968 158 28 0 chr13 24637409 24637586 -95107312 - MER57B LTR ERV1 0 434 253 7021 162 20 8 chr13 24637586 24638378 -95106520 + L1PA16 LINE L1 3893 4674 -1492 1847 116 16 0 chr13 24638378 24638629 -95106269 + AluSg SINE Alu 44 298 -12 7021 162 20 8 chr13 24638629 24640071 -95104827 + L1PA16 LINE L1 4674 6157 -9 12160 151 19 16 chr13 24640075 24640129 -95104769 - ERVL-C2 LTR ERVL -255 5509 5457 189 74 0 0 chr13 24640129 24640156 -95104742 + (CA)n Simple_repeat Simple_repeat 2 28 0 12160 151 19 16 chr13 24640156 24642122 -95102776 - ERVL-C2 LTR ERVL -307 5457 3444 5486 159 48 12 chr13 24642110 24642536 -95102362 - ERVL-C2 LTR ERVL -2965 2799 2390 * 2185 151 110 15 chr13 24642536 24642926 -95101972 + MSTA LTR MaLR 1 427 -1 5486 159 48 12 chr13 24642926 24643428 -95101470 - ERVL-C2 LTR ERVL -3374 2390 1837 7516 212 28 35 chr13 24643458 24643967 -95100931 - ERVL-C2 LTR ERVL -4139 1625 1114 1126 171 411 10 chr13 24643967 24644271 -95100627 + MSTB LTR MaLR 1 426 0 7516 212 28 35 chr13 24644271 24645150 -95099748 - ERVL-C2 LTR ERVL -4650 1114 247 2211 129 46 35 chr13 24645150 24645521 -95099377 - THE1C LTR MaLR 0 375 1 7516 212 28 35 chr13 24645521 24645766 -95099132 - ERVL-C2 LTR ERVL -5517 247 2 277 110 0 141 chr13 24645767 24645863 -95099035 - MLT2C2 LTR ERVL 0 464 422 1411 219 99 56 chr13 24645882 24646347 -95098551 - MLT2B1 LTR ERVL -35 485 1 2491 85 0 0 chr13 24646491 24646798 -95098100 + AluY SINE Alu 1 307 -4 288 264 170 0 chr13 24646903 24647009 -95097889 + MIR SINE MIR 3 126 -136 226 102 0 61 chr13 24647038 24647087 -95097811 - LTR66 LTR ERVL -171 439 394 425 141 33 25 chr13 24647093 24647214 -95097684 + (TA)n Simple_repeat Simple_repeat 1 122 0 235 100 20 20 chr13 24647222 24647272 -95097626 - LTR66 LTR ERVL -171 439 390 2307 105 0 0 chr13 24648452 24648748 -95096150 - AluSx SINE Alu -16 296 1 228 135 0 0 chr13 24648783 24648820 -95096078 + (T)n Simple_repeat Simple_repeat 1 37 0 22 0 0 0 chr13 24649336 24649358 -95095540 + AT_rich Low_complexity Low_complexity 1 22 0 235 189 95 53 chr13 24649363 24649458 -95095440 - L1MC4a LINE L1 -1636 6172 6074 271 398 84 17 chr13 24649465 24649822 -95095076 + L2 LINE L2 2888 3268 -4 2232 116 0 0 chr13 24650058 24650361 -95094537 + AluSg SINE Alu 1 303 -7 252 0 0 0 chr13 24650377 24650405 -95094493 + (TTTTA)n Simple_repeat Simple_repeat 5 32 0 2131 111 7 3 chr13 24650408 24650696 -95094202 - AluSg SINE Alu -21 289 1 21 57 0 0 chr13 24650915 24650950 -95093948 + AT_rich Low_complexity Low_complexity 1 35 0 356 234 123 58 chr13 24651709 24651880 -95093018 - L2 LINE L2 0 3313 3132 2165 136 0 0 chr13 24651933 24652241 -95092657 + AluSx SINE Alu 1 308 -4 21 36 0 0 chr13 24652317 24652345 -95092553 + AT_rich Low_complexity Low_complexity 1 28 0 780 181 0 0 chr13 24652347 24652474 -95092424 + FRAM SINE Alu 40 166 -10 263 272 100 69 chr13 24653406 24653887 -95091011 + L1M4 LINE L1 2335 2830 -3316 231 295 50 22 chr13 24654073 24654212 -95090686 + L1P LINE L1 4884 5026 -1120 1089 116 9 116 chr13 24654216 24654441 -95090457 + L1MB8 LINE L1 5977 6177 -1 31 0 0 0 chr13 24654442 24654473 -95090425 + AT_rich Low_complexity Low_complexity 1 31 0 24 0 0 0 chr13 24654705 24654729 -95090169 + AT_rich Low_complexity Low_complexity 1 24 0 317 327 153 14 chr13 24654801 24655024 -95089874 + L1ME4a LINE L1 5392 5645 -2163 702 179 11 11 chr13 24655067 24655246 -95089652 + (TAGA)n Simple_repeat Simple_repeat 2 180 0 268 301 114 40 chr13 24655582 24655881 -95089017 + L1ME4a LINE L1 5624 5944 -177 203 147 0 0 chr13 24655892 24655926 -95088972 + (TG)n Simple_repeat Simple_repeat 2 35 0 2317 79 0 3 chr13 24656529 24656821 -95088077 + AluY SINE Alu 2 292 -19 869 178 0 0 chr13 24657579 24657708 -95087190 - FLAM_A SINE Alu -4 129 1 525 309 88 41 chr13 24657710 24657847 -95087051 - L1M4 LINE L1 -1085 5061 4932 2062 179 2 54 chr13 24657847 24658256 -95086642 - MLT1B LTR MaLR 0 390 3 525 309 88 41 chr13 24658256 24658892 -95086006 - L1M4 LINE L1 -1214 4932 4252 1637 256 65 20 chr13 24659191 24659680 -95085218 + MER74B LTR ERVL 56 566 -56 668 183 69 92 chr13 24660089 24660213 -95084685 - L1MC5 LINE L1 -11 7950 7825 2545 44 0 7 chr13 24660213 24660509 -95084389 + AluY SINE Alu 1 294 -17 668 183 69 92 chr13 24660509 24660646 -95084252 - L1MC5 LINE L1 -136 7825 7695 218 274 147 20 chr13 24660751 24660853 -95084045 + MIR SINE MIR 19 133 -75 338 353 16 8 chr13 24661002 24661124 -95083774 + MIR SINE MIR 22 144 -118 368 211 64 9 chr13 24661212 24661321 -95083577 + Charlie7 DNA MER1_type 65 179 -2433 453 284 34 92 chr13 24661338 24661880 -95083018 - L1MEd LINE L1 -4869 1250 762 9130 95 0 1 chr13 24661996 24663180 -95081718 + THE1B-int LTR MaLR 398 1580 0 2429 113 73 14 chr13 24663180 24663524 -95081374 + THE1B LTR MaLR 1 364 0 1852 181 0 0 chr13 24663524 24663856 -95081042 + L1PA13 LINE L1 4126 4457 -1689 1763 124 0 16 chr13 24663856 24664113 -95080785 + AluSx SINE Alu 35 287 -25 805 99 9 0 chr13 24664131 24664242 -95080656 + THE1B LTR MaLR 253 364 0 6384 114 9 3 chr13 24664242 24665404 -95079494 + L1PA13 LINE L1 4995 6163 0 1552 202 34 3 chr13 24665914 24666211 -95078687 + AluJo SINE Alu 1 306 -6 226 290 0 0 chr13 24666476 24666538 -95078360 + GA-rich Low_complexity Low_complexity 3 64 0 1669 184 52 66 chr13 24666608 24667153 -95077745 + MER67C LTR ERV1 1 504 -10 22 0 0 0 chr13 24667919 24667941 -95076957 + AT_rich Low_complexity Low_complexity 1 22 0 4781 165 37 26 chr13 24668016 24669277 -95075621 + L1MB4 LINE L1 4909 6178 -2 622 273 53 76 chr13 24669389 24669731 -95075167 + L1ME3A LINE L1 4869 5196 -950 2402 74 0 0 chr13 24669731 24670027 -95074871 - AluY SINE Alu -15 296 1 622 273 53 76 chr13 24670027 24670226 -95074672 + L1ME3A LINE L1 5196 5398 -748 381 334 99 21 chr13 24670246 24670690 -95074208 + L1ME3A LINE L1 5470 5938 -232 2044 106 4 0 chr13 24670888 24671162 -95073736 + AluSc SINE Alu 33 307 -2 1698 74 0 52 chr13 24671553 24671783 -95073115 + AluSq SINE Alu 1 218 -95 617 172 125 8 chr13 24672068 24672196 -95072702 - MLT1B LTR MaLR -234 156 14 2254 105 0 0 chr13 24672270 24672565 -95072333 - AluSx SINE Alu -17 295 1 884 168 6 48 chr13 24673472 24673639 -95071259 - FRAM SINE Alu -17 159 1 1213 200 69 87 chr13 24673668 24673835 -95071063 + MLT1C LTR MaLR 7 176 -291 2059 122 0 3 chr13 24673835 24674129 -95070769 + AluSx SINE Alu 1 293 -19 1213 200 69 87 chr13 24674129 24674396 -95070502 + MLT1C LTR MaLR 176 433 -34 359 286 81 11 chr13 24674421 24674606 -95070292 + L2 LINE L2 1771 1968 -1346 196 272 201 41 chr13 24674760 24675028 -95069870 + L2 LINE L2 2341 2651 -663 2217 105 0 16 chr13 24675090 24675394 -95069504 + AluSx SINE Alu 3 301 -11 1801 151 15 48 chr13 24675401 24675733 -95069165 - MLT1A1 LTR MaLR -40 325 5 459 0 0 0 chr13 24675776 24675827 -95069071 + (TG)n Simple_repeat Simple_repeat 1 51 0 2324 132 14 3 chr13 24675827 24676190 -95068708 - L1MA9 LINE L1 -161 6151 5785 1725 265 32 2 chr13 24676436 24676847 -95068051 - MER70B LTR ERVL -152 426 4 2172 234 14 24 chr13 24676860 24677440 -95067458 - MER70B-int LTR ERVL 0 5023 4450 1192 204 32 22 chr13 24678123 24678559 -95066339 - MER70B-int LTR ERVL -1443 3580 3084 * 1494 163 112 14 chr13 24678556 24678851 -95066047 - MER70B-int LTR ERVL -2375 2648 2325 335 379 128 0 chr13 24678861 24679088 -95065810 - L1M3c LINE L1 -5884 257 2 270 165 273 66 chr13 24679132 24679253 -95065645 - L1MC4 LINE L1 -366 7676 7531 724 283 94 7 chr13 24679429 24679715 -95065183 - L1MC4 LINE L1 -443 7599 7289 1741 179 28 0 chr13 24679715 24680005 -95064893 + AluJb SINE Alu 1 298 -14 319 219 29 0 chr13 24681036 24681141 -95063757 + (TA)n Simple_repeat Simple_repeat 1 108 0 252 0 0 0 chr13 24681176 24681204 -95063694 + (TA)n Simple_repeat Simple_repeat 2 29 0 2485 58 0 16 chr13 24681204 24681515 -95063383 - AluY SINE Alu -5 306 1 189 0 0 0 chr13 24682172 24682193 -95062705 + (ATTG)n Simple_repeat Simple_repeat 4 24 0 1578 183 0 21 chr13 24682196 24682486 -95062412 - AluJb SINE Alu -28 284 1 327 207 17 52 chr13 24682492 24682608 -95062290 + Charlie7 DNA MER1_type 2435 2546 -66 2336 62 7 3 chr13 24682649 24682939 -95061959 + AluSq SINE Alu 1 291 -22 327 276 26 79 chr13 24683077 24683229 -95061669 - L2 LINE L2 -7 3306 3163 216 293 17 0 chr13 24683706 24683764 -95061134 + (CG)n Simple_repeat Simple_repeat 2 60 0 2673 48 0 0 chr13 24683950 24684260 -95060638 - AluY SINE Alu 0 311 2 365 274 0 12 chr13 24684794 24684878 -95060020 - MIR SINE MIR -153 109 27 1020 139 13 0 chr13 24684922 24685073 -95059825 - FRAM SINE Alu -24 152 1 358 259 35 26 chr13 24685158 24685274 -95059624 + MIR3 SINE MIR 86 202 -6 2329 102 16 0 chr13 24685808 24686112 -95058786 - AluSc SINE Alu 0 309 1 2231 90 3 0 chr13 24686231 24686520 -95058378 + AluSx SINE Alu 1 290 -22 208 279 47 58 chr13 24686869 24686955 -95057943 - L3b LINE CR1 -98 1485 1401 1841 224 56 18 chr13 24687120 24687567 -95057331 - MLT1D LTR MaLR -21 484 21 323 344 51 6 chr13 24687600 24687757 -95057141 - L3 LINE CR1 -41 1536 1373 215 349 48 0 chr13 24687880 24687963 -95056935 - L2 LINE L2 -4 3268 3182 5286 266 104 20 chr13 24688469 24688619 -95056279 - L2 LINE L2 0 3313 3177 1893 140 90 39 chr13 24688619 24688976 -95055922 + THE1C LTR MaLR 1 375 0 5286 266 104 20 chr13 24688976 24689595 -95055303 - L2 LINE L2 -136 3177 2611 2708 196 70 33 chr13 24689595 24690165 -95054733 + MLT1E LTR MaLR 1 591 -2 5286 266 104 20 chr13 24690165 24691499 -95053399 - L2 LINE L2 -702 2611 1032 4520 141 63 41 chr13 24691505 24691786 -95053112 + L1MCa LINE L1 579 852 -5574 3440 77 18 14 chr13 24691786 24692228 -95052670 - MLT2A1 LTR ERVL 0 444 1 4520 141 63 41 chr13 24692228 24692857 -95052041 + L1MCa LINE L1 852 1509 -4917 274 298 36 12 chr13 24692857 24692941 -95051957 - MIR SINE MIR -171 91 6 201 129 0 0 chr13 24692974 24693005 -95051893 + (CA)n Simple_repeat Simple_repeat 2 32 0 1318 283 97 36 chr13 24693137 24693553 -95051345 + L1MEc LINE L1 1213 1602 -4794 1854 112 71 4 chr13 24693553 24693848 -95051050 + AluSx SINE Alu 1 313 0 1318 283 97 36 chr13 24693848 24694176 -95050722 + L1MEc LINE L1 1602 2003 -4393 3551 166 22 37 chr13 24694249 24694918 -95049980 + MER67B LTR ERV1 1 659 -2 911 97 0 0 chr13 24694928 24695041 -95049857 + AluY SINE Alu 1 113 -198 657 234 27 11 chr13 24695041 24695225 -95049673 + L1MEc LINE L1 2856 3042 -3173 195 184 0 0 chr13 24695225 24695263 -95049635 + (TA)n Simple_repeat Simple_repeat 2 39 0 237 174 0 0 chr13 24695300 24695346 -95049552 + LTR66 LTR ERVL 394 439 -171 * 1899 201 37 5 chr13 24695332 24695703 -95049195 - MLT2D LTR ERVL -40 480 1 3630 212 117 41 chr13 24695703 24696991 -95047907 + L1M3 LINE L1 4004 5406 -760 2210 137 5 67 chr13 24696991 24697377 -95047521 + MLT1A1 LTR MaLR 4 365 0 3630 212 117 41 chr13 24697377 24697510 -95047388 + L1M3 LINE L1 5406 5528 -638 1565 189 31 18 chr13 24697524 24697587 -95047311 + MER45B DNA AcHobo 38 99 -941 2246 99 20 3 chr13 24697587 24697889 -95047009 - AluSq SINE Alu -6 307 1 1565 189 31 18 chr13 24697889 24698111 -95046787 + MER45B DNA AcHobo 99 327 -713 573 128 12 0 chr13 24698111 24698197 -95046701 + L1M3 LINE L1 5587 5673 -510 788 101 335 21 chr13 24698197 24698385 -95046513 + MER45B DNA AcHobo 790 1036 -4 495 250 0 0 chr13 24698387 24698487 -95046411 + L1ME LINE L1 5523 5622 -544 200 136 68 0 chr13 24699801 24699845 -95045053 + A-rich Low_complexity Low_complexity 1 47 0 474 336 94 0 chr13 24700109 24700332 -95044566 - MIR SINE MIR -8 254 11 184 263 0 0 chr13 24700445 24700483 -95044415 + L3b LINE CR1 1200 1237 -346 1141 284 83 43 chr13 24700630 24700864 -95044034 + LTR16B LTR ERVL 1 224 -240 2195 52 33 4 chr13 24700864 24701160 -95043738 + AluY SINE Alu 1 304 0 1141 284 83 43 chr13 24701160 24701368 -95043530 + LTR16B LTR ERVL 224 462 -2 2441 86 0 3 chr13 24701398 24701711 -95043187 + AluSx SINE Alu 1 312 0 193 340 0 0 chr13 24702484 24702534 -95042364 + MIR SINE MIR 64 113 -149 1920 132 17 20 chr13 24702916 24703212 -95041686 + AluJb SINE Alu 1 295 -17 346 280 347 19 c