207 282 14 42 chr12 404 475 -144282014 + L2 LINE L2 3196 3264 -8 190 226 132 19 chr12 5233 5286 -144277203 + MIR SINE MIR 87 145 -63 180 0 0 0 chr12 7180 7200 -144275289 + (CAGGG)n Simple_repeat Simple_repeat 2 21 0 289 200 13 40 chr12 8632 8707 -144273782 + MIR SINE MIR 51 123 -139 213 309 37 12 chr12 8911 8992 -144273497 + MIR SINE MIR 180 262 0 263 225 119 0 chr12 10716 10820 -144271669 + MIR SINE MIR 25 150 -62 518 282 98 20 chr12 10837 11040 -144271449 + MIR SINE MIR 5 236 -26 323 68 85 0 chr12 11052 11111 -144271378 - MADE1 DNA Mariner -14 66 3 632 353 95 16 chr12 11233 11550 -144270939 - L3b LINE CR1 -95 1488 1147 340 320 176 0 chr12 11704 11857 -144270632 + MIR SINE MIR 7 186 -76 791 175 36 0 chr12 11884 12021 -144270468 - FLAM_C SINE Alu -1 142 1 212 275 0 66 chr12 12024 12115 -144270374 + CT-rich Low_complexity Low_complexity 1 85 0 268 299 210 6 chr12 12672 12829 -144269660 + MIR SINE MIR 68 256 -6 401 329 77 31 chr12 13125 13347 -144269142 + L1MC4 LINE L1 7429 7660 -382 499 310 66 68 chr12 14340 14814 -144267675 + L2 LINE L2 2713 3205 -108 298 283 93 78 chr12 14838 15043 -144267446 - L2 LINE L2 -6 3307 3100 249 339 179 9 chr12 15203 15427 -144267062 - L2 LINE L2 -577 2737 2476 * 319 269 39 48 chr12 15417 15521 -144266968 + L2 LINE L2 3166 3268 -4 323 167 23 92 chr12 16244 16418 -144266071 + G-rich Low_complexity Low_complexity 2 163 0 194 389 56 0 chr12 17242 17350 -144265139 - L3b LINE CR1 -130 1453 1340 236 229 0 0 chr12 17403 17451 -144265038 + L2 LINE L2 3262 3309 -4 3248 279 97 18 chr12 18705 20174 -144262315 + HAL1 LINE L1 78 1662 -845 532 297 170 3 chr12 20187 20557 -144261932 + HAL1 LINE L1 1723 2154 -353 253 212 9 80 chr12 20558 20661 -144261828 + HAL1 LINE L1 2214 2310 -197 1912 135 0 0 chr12 20661 20928 -144261561 + AluSx SINE Alu 1 267 -45 768 275 48 7 chr12 20956 21229 -144261260 + L1ME3 LINE L1 5879 6162 0 528 253 66 11 chr12 21237 21419 -144261070 + HAL1 LINE L1 2306 2497 -10 313 341 29 0 chr12 23258 23396 -144259093 + MIR3 SINE MIR 52 193 -15 323 324 11 28 chr12 24732 24914 -144257575 + GA-rich Low_complexity Low_complexity 2 180 0 417 289 35 52 chr12 25595 25768 -144256721 + MER5B DNA MER1_type 1 170 -8 184 214 18 71 chr12 26131 26187 -144256302 + L3 LINE CR1 1492 1544 -33 195 215 139 25 chr12 26763 26842 -144255647 - MIR SINE MIR -108 154 67 205 325 50 50 chr12 26967 27087 -144255402 - MIR SINE MIR -29 233 114 1055 326 67 41 chr12 27473 28411 -144254078 - L2 LINE L2 -1 3271 2313 771 279 165 0 chr12 28730 29135 -144253354 + L2 LINE L2 1640 2111 -1203 299 344 139 35 chr12 29492 30071 -144252418 + L2 LINE L2 2545 3272 0 947 189 22 11 chr12 31240 31425 -144251064 - MER5A DNA MER1_type -2 187 1 381 335 12 48 chr12 31478 31645 -144250844 + MIR SINE MIR 96 256 -6 324 256 0 23 chr12 31916 32002 -144250487 + MIR3 SINE MIR 95 178 -30 632 313 55 9 chr12 32081 32312 -144250177 + MIR SINE MIR 3 241 -21 280 179 26 0 chr12 32859 32937 -144249552 + CT-rich Low_complexity Low_complexity 1 80 0 1304 172 12 124 chr12 32937 33275 -144249214 - AluJo SINE Alu -1 311 12 848 196 7 0 chr12 34201 34349 -144248140 + FRAM SINE Alu 20 168 -8 277 239 230 9 chr12 34350 34463 -144248026 - MIR SINE MIR -8 254 117 1558 196 21 7 chr12 34487 34778 -144247711 + AluJo SINE Alu 1 295 -17 369 0 0 0 chr12 35752 35793 -144246696 + (CA)n Simple_repeat Simple_repeat 1 41 0 542 238 89 12 chr12 36149 36317 -144246172 - MIR3 SINE MIR -14 194 14 212 160 0 60 chr12 36902 36952 -144245537 + GA-rich Low_complexity Low_complexity 1 47 0 189 312 48 91 chr12 37148 37334 -144245155 - MIR3 SINE MIR -1 207 30 207 374 49 8 chr12 38018 38141 -144244348 + L2 LINE L2 3167 3294 -19 433 305 0 16 chr12 38906 39151 -144243338 + MER5C DNA MER1_type 25 324 0 238 331 107 22 chr12 39222 39400 -144243089 + MIR SINE MIR 32 224 -38 259 265 265 0 chr12 39401 39503 -144242986 + L2 LINE L2 3185 3313 0 198 118 0 0 chr12 40510 40544 -144241945 + (TCC)n Simple_repeat Simple_repeat 2 35 0 29 84 0 0 chr12 40864 40935 -144241554 + GC_rich Low_complexity Low_complexity 1 71 0 1519 171 0 38 chr12 41657 41950 -144240539 + AluJo SINE Alu 1 282 -30 258 105 0 0 chr12 41952 41990 -144240499 + (T)n Simple_repeat Simple_repeat 1 38 0 350 276 35 55 chr12 41999 42198 -144240291 + L1MC5 LINE L1 7713 7907 -54 2352 235 152 3 chr12 43589 44155 -144238334 - MLT1E1 LTR MaLR 0 654 5 2166 95 3 16 chr12 44473 44777 -144237712 - AluSx SINE Alu -12 300 1 1228 166 0 10 chr12 44814 45007 -144237482 - AluSx SINE Alu -121 191 1 900 292 30 28 chr12 45007 45507 -144236982 - L1M4 LINE L1 -2120 4026 3526 403 119 0 0 chr12 45565 45624 -144236865 - Alu SINE Alu -7 304 246 914 143 0 0 chr12 45632 45765 -144236724 - AluJb SINE Alu -179 133 1 1651 180 3 3 chr12 45766 46055 -144236434 - AluJb SINE Alu -3 309 21 699 296 55 17 chr12 46058 46477 -144236012 - L1M4 LINE L1 -2642 3504 3070 653 106 0 11 chr12 47813 47907 -144234582 + AluJo SINE Alu 44 136 -176 1254 199 3 94 chr12 47909 48023 -144234466 + AluJo SINE Alu 4 127 -185 1600 111 0 0 chr12 48023 48248 -144234241 - AluSg/x SINE Alu -3 309 85 1254 199 3 94 chr12 48248 48464 -144234025 + AluJo SINE Alu 127 304 -8 183 246 116 0 chr12 49032 49101 -144233388 + L2 LINE L2 3021 3097 -216 212 349 0 0 chr12 49166 49229 -144233260 + L2 LINE L2 3217 3279 -34 195 316 32 53 chr12 49353 49448 -144233041 + L3b LINE CR1 1243 1335 -248 751 285 130 12 chr12 50970 51293 -144231196 - MLT1K LTR MaLR 0 588 228 366 311 155 24 chr12 52017 52223 -144230266 - L3 LINE CR1 -12 1565 1333 263 277 43 11 chr12 52386 52480 -144230009 - MIR SINE MIR -132 130 34 583 353 28 8 chr12 54974 55229 -144227260 - MLT1L LTR MaLR -17 598 339 180 0 0 0 chr12 55252 55272 -144227217 + (CCA)n Simple_repeat Simple_repeat 1 20 0 204 125 0 0 chr12 55327 55359 -144227130 + (TAA)n Simple_repeat Simple_repeat 3 34 0 489 232 271 34 chr12 55359 55536 -144226953 - MIR SINE MIR 0 262 44 283 246 184 9 chr12 56532 56646 -144225843 - MER117 DNA MER1_type -9 188 55 357 309 25 56 chr12 56664 56826 -144225663 - MIR3 SINE MIR -49 159 3 262 286 0 13 chr12 58201 58278 -144224211 + (TG)n Simple_repeat Simple_repeat 2 77 0 4300 141 49 59 chr12 58314 59715 -144222774 + pTR5 LTR ERV1 742 2438 0 962 241 56 25 chr12 60267 60553 -144221936 + MLT1F LTR MaLR 240 534 -8 256 238 114 9 chr12 60581 60686 -144221803 - MLT1L LTR MaLR -221 321 206 364 305 198 0 chr12 61785 61982 -144220507 - L1M4 LINE L1 -1882 4264 4029 1113 134 6 0 chr12 61990 62161 -144220328 - AluSg/x SINE Alu -15 295 124 2518 42 3 0 chr12 62161 62468 -144220021 - AluY SINE Alu -3 308 1 1021 343 50 48 chr12 62476 62850 -144219639 - BaEV-int LTR ERV1 -2711 3938 3566 315 0 0 0 chr12 62850 62885 -144219604 + (CCCTAA)n Simple_repeat Simple_repeat 1 35 0 1021 343 50 48 chr12 62885 63352 -144219137 - BaEV-int LTR ERV1 -3083 3566 3095 603 278 147 4 chr12 63877 64129 -144218360 + MER102b DNA MER1_type 51 338 -3 251 308 109 19 chr12 64191 64347 -144218142 - L3 LINE CR1 0 1577 1408 337 246 45 18 chr12 64631 64741 -144217748 - LTR18B LTR ERVL -234 380 268 522 96 0 0 chr12 64793 64866 -144217623 - LTR18B LTR ERVL -212 402 330 211 291 0 0 chr12 64882 64937 -144217552 + CT-rich Low_complexity Low_complexity 2 56 0 1274 323 40 32 chr12 64942 65701 -144216788 - BaEV-int LTR ERV1 -5731 2054 1290 576 333 25 45 chr12 65898 66255 -144216234 - BaEV-int LTR ERV1 -6779 1006 657 245 202 19 106 chr12 67873 67977 -144214512 + MIR3 SINE MIR 87 181 -27 206 125 0 54 chr12 68177 68233 -144214256 + (TTA)n Simple_repeat Simple_repeat 2 54 0 317 302 38 9 chr12 68612 68718 -144213771 - MIR SINE MIR -109 153 45 588 297 80 6 chr12 69230 69451 -144213038 + MIR SINE MIR 22 258 -4 181 330 66 47 chr12 70286 70392 -144212097 + L3b LINE CR1 1342 1449 -134 528 267 142 22 chr12 70870 71095 -144211394 - MIR SINE MIR -3 259 8 394 267 60 0 chr12 71452 71568 -144210921 - MIR SINE MIR -117 145 23 360 239 90 22 chr12 73350 73484 -144209005 - MIR3 SINE MIR -49 159 17 398 333 45 0 chr12 74310 74466 -144208023 - MIR SINE MIR -64 198 36 828 293 129 25 chr12 74847 75243 -144207246 - LTR16A LTR ERVL -7 443 7 268 296 133 104 chr12 75304 75544 -144206945 - L2 LINE L2 0 3272 3026 363 239 55 47 chr12 77092 77290 -144205199 - MIR SINE MIR -9 253 6 359 293 49 0 chr12 77553 77676 -144204813 - MIR3 SINE MIR -11 197 69 216 250 0 0 chr12 77677 77733 -144204756 + (TG)n Simple_repeat Simple_repeat 1 56 0 1082 265 21 11 chr12 77797 78080 -144204409 - LTR16C LTR ERVL -52 439 154 1622 138 12 108 chr12 78409 78742 -144203747 + AluJb SINE Alu 1 301 -1 372 196 19 84 chr12 79109 79216 -144203273 + MIR3 SINE MIR 100 199 -9 193 297 99 0 chr12 79266 79357 -144203132 - L2 LINE L2 -10 3303 3204 2347 98 0 6 chr12 79391 79706 -144202783 + AluSq SINE Alu 1 313 0 356 306 131 33 chr12 79711 79894 -144202595 - MIR SINE MIR -13 249 49 236 291 100 0 chr12 79995 80105 -144202384 - L2 LINE L2 -218 3054 2934 691 266 62 0 chr12 80442 80634 -144201855 - MIR SINE MIR -1 261 58 261 0 0 0 chr12 81831 81860 -144200629 + (TG)n Simple_repeat Simple_repeat 1 29 0 420 286 27 38 chr12 81897 82082 -144200407 + MIR3 SINE MIR 20 202 -6 261 354 82 38 chr12 82142 82300 -144200189 + L3 LINE CR1 338 502 -1075 371 326 21 0 chr12 82747 82888 -144199601 - L2 LINE L2 -272 3041 2898 493 206 70 106 chr12 82988 83187 -144199302 + MER20 DNA MER1_type 2 193 -26 1633 239 268 8 chr12 83204 83988 -144198501 - L2 LINE L2 -508 2806 1819 458 254 98 54 chr12 83988 84264 -144198225 + L1MC5 LINE L1 7510 7797 -164 479 229 118 7 chr12 84305 84458 -144198031 - L2 LINE L2 -1476 1838 1669 302 355 0 8 chr12 84576 84697 -144197792 - MIR SINE MIR 0 262 143 776 253 192 15 chr12 85182 85589 -144196900 - L2 LINE L2 0 3313 2835 470 295 109 6 chr12 85806 85989 -144196500 - MIR SINE MIR -6 256 55 216 305 0 24 chr12 86353 86435 -144196054 + (TATG)n Simple_repeat Simple_repeat 3 82 0 263 194 90 15 chr12 87683 87750 -144194739 + MIR SINE MIR 84 155 -107 291 312 91 26 chr12 87910 88064 -144194425 - L2 LINE L2 -3 3269 3106 547 267 86 16 chr12 88402 88589 -144193900 - MIR SINE MIR -19 243 44 537 345 17 2 chr12 88640 88838 -144193651 - MIR SINE MIR -19 243 43 403 306 67 22 chr12 89012 89146 -144193343 - MLT1G1 LTR MaLR -28 567 428 331 194 0 15 chr12 89196 89263 -144193226 - MLT1G1 LTR MaLR -280 315 250 474 348 98 14 chr12 89282 89710 -144192779 - L2 LINE L2 -1258 2056 1593 210 276 38 57 chr12 89769 89874 -144192615 - MIR SINE MIR -11 251 149 270 277 36 22 chr12 91387 91407 -144191082 - L1MA10 LINE L1 0 6334 6315 3182 228 51 15 chr12 91407 92745 -144189744 - L1ME1 LINE L1 -8 6158 4673 1670 139 41 60 chr12 93440 93756 -144188733 + AluJb SINE Alu 1 310 -2 206 143 29 0 chr12 94341 94376 -144188113 - MER91 DNA MER1_type -117 73 38 272 324 20 20 chr12 95019 95121 -144187368 - MIR SINE MIR -80 182 81 2561 142 51 10 chr12 95622 96037 -144186452 + MSTB1 LTR MaLR 1 432 0 193 267 0 0 chr12 96100 96145 -144186344 - L2 LINE L2 -23 3290 3246 281 272 62 0 chr12 96210 96291 -144186198 + MIR SINE MIR 17 102 -160 349 286 19 23 chr12 96693 97005 -144185484 + C-rich Low_complexity Low_complexity 1 311 0 248 130 22 0 chr12 97025 97071 -144185418 + CT-rich Low_complexity Low_complexity 1 47 0 9968 59 3 0 chr12 97193 98540 -144183949 - L1P LINE L1 -1772 4374 3024 274 224 105 26 chr12 98540 98616 -144183873 + MLT1J LTR MaLR 330 411 -100 806 120 0 0 chr12 98719 98827 -144183662 - FLAM_C SINE Alu -35 108 1 479 49 0 0 chr12 98830 98891 -144183598 + L1P LINE L1 2970 3030 -3116 305 344 0 16 chr12 99004 99132 -144183357 - MLT1J LTR MaLR -270 241 116 270 264 18 36 chr12 99233 99343 -144183146 - L2 LINE L2 -222 3050 2943 906 274 145 3 chr12 99347 99720 -144182769 - MLT1J2 LTR MaLR 0 450 25 309 296 43 17 chr12 100034 100149 -144182340 - MIR SINE MIR -58 204 87 879 157 0 0 chr12 100149 100283 -144182206 + AluJo SINE Alu 1 134 -178 1586 189 36 26 chr12 101825 102211 -144180278 + Charlie5 DNA MER1_type 2234 2623 0 216 341 54 16 chr12 102512 102641 -144179848 + L2 LINE L2 3139 3272 0 521 181 75 8 chr12 102832 102965 -144179524 + L2 LINE L2 2600 2741 -573 1270 234 31 31 chr12 103029 103388 -144179101 + MLT1E-int LTR MaLR 248 606 -765 466 269 147 103 chr12 103589 104237 -144178252 + MLT1E-int LTR MaLR 696 1371 0 1544 228 127 29 chr12 104241 104396 -144178093 + MLT1E LTR MaLR 2 140 -453 2223 133 0 0 chr12 104396 104697 -144177792 + AluSx SINE Alu 1 301 -11 1544 228 127 29 chr12 104697 105067 -144177422 + MLT1E LTR MaLR 140 579 -14 590 324 29 3 chr12 105079 105404 -144177085 + L2 LINE L2 2792 3125 -188 1395 209 0 0 chr12 105405 105673 -144176816 - AluJb SINE Alu -5 307 40 235 230 257 0 chr12 105695 105769 -144176720 + L2 LINE L2 3221 3313 0 223 267 60 26 chr12 106072 106188 -144176301 - MIR SINE MIR -59 149 30 6060 97 11 0 chr12 106973 108159 -144174330 - L1PA10 LINE L1 -5 6163 4962 510 246 22 22 chr12 108706 108840 -144173649 + MIR SINE MIR 20 153 -109 2955 217 71 19 chr12 108911 109709 -144172780 - L1ME1 LINE L1 -2 6164 5325 566 329 46 71 chr12 109725 110141 -144172348 + L2 LINE L2 2230 2628 -686 2153 140 13 0 chr12 110141 110448 -144172041 - AluSx SINE Alu -1 311 1 566 329 46 71 chr12 110448 110620 -144171869 + L2 LINE L2 2628 2803 -511 621 327 59 11 chr12 110661 110933 -144171556 + L2 LINE L2 2910 3194 -78 915 168 23 51 chr12 110958 111154 -144171335 - MER45B DNA AcHobo -541 1040 840 2161 104 0 4 chr12 111154 111433 -144171056 + AluSg SINE Alu 1 278 -32 200 35 35 0 chr12 111433 111462 -144171027 + (TAAAA)n Simple_repeat Simple_repeat 1 30 0 915 168 23 51 chr12 111462 111478 -144171011 - MER45B DNA AcHobo -739 842 833 2486 123 47 90 chr12 111697 112288 -144170201 - MER4D LTR ERV1 -337 566 1 505 303 40 21 chr12 112288 112504 -144169985 - L1M2 LINE L1 -600 5574 5349 341 364 64 27 chr12 112535 112925 -144169564 - L1M4 LINE L1 -764 5382 4982 1622 179 65 4 chr12 112939 113218 -144169271 + AluJo SINE Alu 4 299 -13 264 200 0 0 chr12 113486 113536 -144168953 + MIR3 SINE MIR 157 206 -2 531 247 47 65 chr12 113642 113693 -144168796 - MIR3 SINE MIR -6 202 152 669 172 28 50 chr12 113693 113873 -144168616 + MER5B DNA MER1_type 2 177 -1 531 247 47 65 chr12 113873 113991 -144168498 - MIR3 SINE MIR -56 152 36 185 265 29 15 chr12 114290 114358 -144168131 - L2 LINE L2 -210 3062 2994 393 237 61 9 chr12 115501 115615 -144166874 + MIR3 SINE MIR 86 205 -3 198 0 0 0 chr12 117105 117127 -144165362 + (TCTG)n Simple_repeat Simple_repeat 1 22 0 245 352 0 22 chr12 118920 119102 -144163387 + G-rich Low_complexity Low_complexity 1 178 0 * 274 245 11 87 chr12 119012 119196 -144163293 + (CGGGG)n Simple_repeat Simple_repeat 5 174 0 372 300 155 20 chr12 119446 119646 -144162843 - MIR SINE MIR -1 261 35 398 240 87 27 chr12 119744 119894 -144162595 - L1ME4a LINE L1 -2 6119 5961 404 175 25 0 chr12 121253 121333 -144161156 - MER45B DNA AcHobo -431 609 528 419 185 62 0 chr12 121334 121415 -144161074 - 5S rRNA rRNA -33 88 3 1700 239 95 14 chr12 121415 121918 -144160571 - MER45B DNA AcHobo -496 544 1 184 154 154 19 chr12 121918 121970 -144160519 + L2 LINE L2 3214 3272 0 325 281 125 23 chr12 122480 122608 -144159881 + MIR3 SINE MIR 22 162 -46 794 294 20 20 chr12 122704 122717 -144159772 - MIR SINE MIR 0 262 250 2285 112 3 0 chr12 122717 123020 -144159469 + AluSc SINE Alu 1 304 -5 794 294 20 20 chr12 123020 123258 -144159231 - MIR SINE MIR -11 251 11 330 195 0 0 chr12 123291 123368 -144159121 + (TCCA)n Simple_repeat Simple_repeat 3 79 0 629 302 80 7 chr12 123721 123996 -144158493 + L3 LINE CR1 1282 1576 -1 2004 166 7 0 chr12 124198 124506 -144157983 + AluJo SINE Alu 1 310 -2 234 286 170 0 chr12 124764 124876 -144157613 - MIR3 SINE MIR -63 145 15 482 276 21 21 chr12 124939 125084 -144157405 - MIR SINE MIR -112 150 6 218 276 105 0 chr12 125385 125461 -144157028 + MIR SINE MIR 46 129 -133 218 281 34 45 chr12 125561 125650 -144156839 + MIR SINE MIR 17 104 -104 1522 83 98 5 chr12 125659 125864 -144156625 - AluY SINE Alu -87 224 1 861 223 31 49 chr12 125864 126151 -144156338 + L1ME2 LINE L1 5599 5880 -286 1929 179 0 0 chr12 126160 126456 -144156033 + AluJb SINE Alu 1 296 -16 18374 150 38 17 chr12 126469 130012 -144152477 + L1PB1 LINE L1 3 3470 -3397 1911 117 4 11 chr12 130012 130278 -144152211 + AluSp SINE Alu 50 313 0 18374 150 38 17 chr12 130278 132762 -144149727 + L1PB1 LINE L1 3470 6192 -675 1632 127 32 118 chr12 132762 133102 -144149387 + AluSq SINE Alu 1 311 -2 18374 150 38 17 chr12 133102 133791 -144148698 + L1PB1 LINE L1 6192 6865 -2 386 278 57 26 chr12 133774 133968 -144148521 + L1ME1 LINE L1 5822 6021 -145 * 333 228 0 0 chr12 133960 134039 -144148450 + L1ME2 LINE L1 6076 6154 -10 * 209 293 0 0 chr12 134066 134124 -144148365 - MER5A DNA MER1_type -45 144 87 1996 173 68 34 chr12 134146 134590 -144147899 + LTR2B LTR ERV1 32 490 0 195 259 37 0 chr12 134593 134647 -144147842 - MER5A DNA MER1_type -105 84 29 911 186 36 0 chr12 135226 135393 -144147096 + FRAM SINE Alu 4 176 0 231 357 43 45 chr12 135838 136142 -144146347 + L2 LINE L2 2924 3270 -2 208 329 14 0 chr12 136280 136350 -144146139 + MIR3 SINE MIR 123 193 -15 245 239 0 42 chr12 136539 136610 -144145879 + CT-rich Low_complexity Low_complexity 4 71 0 224 275 25 0 chr12 137251 137331 -144145158 + C-rich Low_complexity Low_complexity 2 83 0 228 331 16 24 chr12 141085 141209 -144141280 + CT-rich Low_complexity Low_complexity 2 124 0 2184 94 0 7 chr12 142947 143283 -144139206 + AluY SINE Alu 1 334 0 486 324 78 5 chr12 143379 143598 -144138891 + MIR SINE MIR 15 249 -13 1820 109 16 12 chr12 143630 143887 -144138602 + AluSx SINE Alu 55 312 0 198 405 34 6 chr12 144000 144178 -144138311 - L3b LINE CR1 -79 1504 1322 527 270 61 25 chr12 144941 145104 -144137385 - MIR3 SINE MIR -18 190 22 414 0 0 0 chr12 146270 146316 -144136173 + (CA)n Simple_repeat Simple_repeat 1 46 0 180 347 0 40 chr12 147489 147613 -144134876 + MIR SINE MIR 33 151 -57 22 0 0 0 chr12 148225 148247 -144134242 + GC_rich Low_complexity Low_complexity 1 22 0 27 29 0 0 chr12 148283 148317 -144134172 + GC_rich Low_complexity Low_complexity 1 34 0 23 0 0 0 chr12 148689 148712 -144133777 + AT_rich Low_complexity Low_complexity 1 23 0 520 272 140 30 chr12 148804 149039 -144133450 + MIR SINE MIR 1 261 -1 320 348 81 36 chr12 149146 149589 -144132900 - L3 LINE CR1 -291 1286 824 1545 166 8 4 chr12 149621 149874 -144132615 - AluJo SINE Alu -17 295 42 430 271 153 20 chr12 149882 150229 -144132260 - L1MC4a LINE L1 -1635 6173 5781 457 301 77 17 chr12 150875 151083 -144131406 - MIR SINE MIR 0 262 28 478 294 27 0 chr12 151966 152112 -144130377 - HERVI LTR ERV1 -2573 5212 5063 270 257 40 0 chr12 152764 152838 -144129651 + MIR3 SINE MIR 89 165 -43 433 264 14 47 chr12 153256 153468 -144129021 - L1MC4a LINE L1 -1875 5933 5729 2797 189 49 5 chr12 153647 154240 -144128249 - L1M2c LINE L1 -6157 632 14 3340 138 5 0 chr12 154241 154814 -144127675 - Tigger1 DNA MER2_type -1236 1182 607 1971 116 14 7 chr12 155281 155574 -144126915 - AluSx SINE Alu -17 295 1 180 0 0 0 chr12 155983 156003 -144126486 + (CCCTG)n Simple_repeat Simple_repeat 2 21 0 24 0 0 0 chr12 157034 157058 -144125431 + AT_rich Low_complexity Low_complexity 1 24 0 1617 178 0 4 chr12 157094 157363 -144125126 - AluSx SINE Alu -44 268 1 255 320 5 104 chr12 157553 157658 -144124831 + L3 LINE CR1 668 742 -835 2075 98 11 0 chr12 157658 157959 -144124530 + AluSg SINE Alu 1 304 0 255 320 5 104 chr12 157959 158074 -144124415 + L3 LINE CR1 742 867 -710 1757 21 0 0 chr12 158095 158334 -144124155 - L1P LINE L1 -791 5355 5117 324 253 23 0 chr12 158358 158445 -144124044 + MIR SINE MIR 48 136 -126 308 291 91 94 chr12 158431 158750 -144123739 + L2 LINE L2 2914 3231 -41 * 368 386 55 15 chr12 158994 159320 -144123169 + L2 LINE L2 2439 2777 -537 194 307 27 13 chr12 159700 159775 -144122714 + L2 LINE L2 3175 3250 -22 289 299 35 0 chr12 160327 160414 -144122075 + MIR3 SINE MIR 98 187 -21 417 239 46 23 chr12 160513 160643 -144121846 - L2 LINE L2 -1 3271 3139 589 323 22 35 chr12 160668 160900 -144121589 - MIR SINE MIR -19 243 15 218 343 0 14 chr12 162012 162085 -144120404 - L2 LINE L2 -1 3271 3200 186 286 79 0 chr12 162317 162380 -144120109 - L2 LINE L2 -19 3253 3186 283 301 165 5 chr12 163284 163484 -144119005 - MIR SINE MIR -3 259 21 209 214 45 107 chr12 163849 163961 -144118528 + MIR SINE MIR 17 121 -87 455 344 18 12 chr12 164603 164766 -144117723 - L2 LINE L2 0 3313 3150 1184 144 5 26 chr12 165031 165226 -144117263 + AluSx SINE Alu 1 191 -121 2166 95 3 16 chr12 165263 165567 -144116922 + AluSx SINE Alu 1 300 -12 2352 235 152 3 chr12 165885 166451 -144116038 + MLT1E1 LTR MaLR 5 654 0 350 276 35 55 chr12 167842 168041 -144114448 - L1MC5 LINE L1 -54 7907 7713 258 105 0 0 chr12 168050 168088 -144114401 + (A)n Simple_repeat Simple_repeat 1 38 0 1519 171 0 38 chr12 168090 168383 -144114106 - AluJo SINE Alu -30 282 1 29 84 0 0 chr12 169105 169176 -144113313 + GC_rich Low_complexity Low_complexity 1 71 0 198 118 0 0 chr12 169496 169530 -144112959 + (GGA)n Simple_repeat Simple_repeat 2 35 0 259 265 265 0 chr12 170536 170638 -144111851 - L2 LINE L2 0 3313 3185 238 331 107 22 chr12 170639 170817 -144111672 - MIR SINE MIR -38 224 32 433 305 0 16 chr12 170888 171133 -144111356 - MER5C DNA MER1_type 0 324 25 207 374 49 8 chr12 171898 172021 -144110468 - L2 LINE L2 -19 3294 3167 189 312 48 91 chr12 172705 172891 -144109598 + MIR3 SINE MIR 30 207 -1 212 160 0 60 chr12 173087 173137 -144109352 + CT-rich Low_complexity Low_complexity 1 47 0 542 238 89 12 chr12 173722 173890 -144108599 + MIR3 SINE MIR 14 194 -14 369 0 0 0 chr12 174246 174287 -144108202 + (TG)n Simple_repeat Simple_repeat 1 41 0 1558 196 21 7 chr12 175261 175552 -144106937 - AluJo SINE Alu -17 295 1 277 239 230 9 chr12 175576 175689 -144106800 + MIR SINE MIR 117 254 -8 848 196 7 0 chr12 175690 175838 -144106651 - FRAM SINE Alu -8 168 20 1304 172 12 124 chr12 176764 177102 -144105387 + AluJo SINE Alu 12 311 -1 280 179 26 0 chr12 177102 177180 -144105309 + GA-rich Low_complexity Low_complexity 1 80 0 660 311 58 9 chr12 177727 177952 -144104537 - MIR SINE MIR -21 241 6 324 256 0 23 chr12 178037 178123 -144104366 - MIR3 SINE MIR -30 178 95 381 335 12 48 chr12 178394 178561 -144103928 - MIR SINE MIR -6 256 96 947 189 22 11 chr12 178614 178799 -144103690 + MER5A DNA MER1_type 1 187 -2 299 344 139 35 chr12 179968 180547 -144101942 - L2 LINE L2 0 3272 2545 771 279 165 0 chr12 180904 181309 -144101180 - L2 LINE L2 -1203 2111 1640 1055 326 67 41 chr12 181628 182566 -144099923 + L2 LINE L2 2313 3271 -1 205 325 50 50 chr12 182952 183072 -144099417 + MIR SINE MIR 114 233 -29 195 215 139 25 chr12 183197 183276 -144099213 + MIR SINE MIR 67 154 -108 184 214 18 71 chr12 183852 183908 -144098581 - L3 LINE CR1 -33 1544 1492 417 289 35 52 chr12 184271 184444 -144098045 - MER5B DNA MER1_type -8 170 1 323 324 11 28 chr12 185125 185307 -144097182 + CT-rich Low_complexity Low_complexity 2 180 0 313 341 29 0 chr12 186643 186781 -144095708 - MIR3 SINE MIR -15 193 52 528 253 66 11 chr12 188620 188802 -144093687 - HAL1 LINE L1 -10 2497 2306 768 275 48 7 chr12 188810 189083 -144093406 - L1ME3 LINE L1 0 6162 5879 1893 132 4 0 chr12 189111 189377 -144093112 - AluSx SINE Alu -45 267 1 253 212 9 80 chr12 189377 189480 -144093009 - HAL1 LINE L1 -197 2310 2214 573 289 180 3 chr12 189481 189848 -144092641 - HAL1 LINE L1 -353 2154 1723 3248 279 97 18 chr12 189861 191330 -144091159 - HAL1 LINE L1 -845 1662 78 236 229 0 0 chr12 192585 192633 -144089856 - L2 LINE L2 -4 3309 3262 194 389 56 0 chr12 192686 192794 -144089695 + L3b LINE CR1 1340 1453 -130 323 167 23 92 chr12 193619 193793 -144088696 + C-rich Low_complexity Low_complexity 2 163 0 319 269 39 48 chr12 194516 194620 -144087869 - L2 LINE L2 -4 3268 3166 249 339 179 9 chr12 194610 194834 -144087655 + L2 LINE L2 2476 2737 -577 * 298 283 93 78 chr12 194994 195199 -144087290 + L2 LINE L2 3100 3307 -6 499 310 66 68 chr12 195223 195697 -144086792 - L2 LINE L2 -108 3205 2713 401 329 77 31 chr12 196690 196912 -144085577 - L1MC4 LINE L1 -382 7660 7429 268 299 210 6 chr12 197208 197365 -144085124 - MIR SINE MIR -6 256 68 212 275 0 66 chr12 197922 198013 -144084476 + GA-rich Low_complexity Low_complexity 1 85 0 791 175 36 0 chr12 198016 198153 -144084336 + FLAM_C SINE Alu 1 142 -1 340 320 176 0 chr12 198180 198333 -144084156 - MIR SINE MIR -76 186 7 632 353 95 16 chr12 198487 198804 -144083685 + L3b LINE CR1 1147 1488 -95 323 68 85 0 chr12 198926 198985 -144083504 + MADE1 DNA Mariner 3 66 -14 518 282 98 20 chr12 198997 199200 -144083289 - MIR SINE MIR -26 236 5 263 225 119 0 chr12 199217 199321 -144083168 - MIR SINE MIR -62 146 25 213 309 37 12 chr12 201045 201126 -144081363 - MIR SINE MIR 0 262 180 289 200 13 40 chr12 201330 201405 -144081084 - MIR SINE MIR -139 123 51 180 0 0 0 chr12 202837 202857 -144079632 + (CCCTG)n Simple_repeat Simple_repeat 2 21 0 190 226 132 19 chr12 204751 204804 -144077685 - MIR SINE MIR -63 145 87 192 77 0 0 chr12 208525 208551 -144073938 + (CCTG)n Simple_repeat Simple_repeat 4 29 0 207 282 14 42 chr12 209568 209639 -144072850 - L2 LINE L2 -8 3264 3196 195 316 32 53 chr12 210322 210417 -144072072 - L3b LINE CR1 -248 1335 1243 212 349 0 0 chr12 210541 210604 -144071885 - L2 LINE L2 -34 3279 3217 183 246 116 0 chr12 210669 210738 -144071751 - L2 LINE L2 -216 3097 3021 1266 201 3 88 chr12 211304 211520 -144070969 - AluJo SINE Alu -8 304 124 1600 114 0 0 chr12 211520 211747 -144070742 + AluSg/x SINE Alu 85 311 -1 1266 201 3 88 chr12 211747 211859 -144070630 - AluJo SINE Alu -188 124 4 653 106 0 11 chr12 211861 211955 -144070534 - AluJo SINE Alu -176 136 44 699 296 55 17 chr12 213291 213710 -144068779 + L1M4 LINE L1 3070 3504 -2642 1651 180 3 3 chr12 213713 214002 -144068487 + AluJb SINE Alu 21 309 -3 914 143 0 0 chr12 214003 214136 -144068353 + AluJb SINE Alu 1 133 -179 403 119 0 0 chr12 214144 214203 -144068286 + Alu SINE Alu 246 304 -7 1170 292 77 30 chr12 214261 214761 -144067728 + L1M4 LINE L1 3526 4070 -2076 2002 112 10 36 chr12 214761 214896 -144067593 + AluSx SINE Alu 1 138 -174 2541 40 0 0 chr12 214896 215195 -144067294 + AluY SINE Alu 10 308 -3 2002 112 10 36 chr12 215195 215364 -144067125 + AluSx SINE Alu 138 297 -15 1170 292 77 30 chr12 215364 215569 -144066920 + L1M4 LINE L1 4070 4264 -1882 849 245 56 25 chr12 216803 217089 -144065400 - MLT1F LTR MaLR -8 534 240 3915 142 49 59 chr12 217641 219042 -144063447 - pTR5 LTR ERV1 0 2438 742 262 286 0 13 chr12 219078 219155 -144063334 + (CA)n Simple_repeat Simple_repeat 2 77 0 373 309 25 56 chr12 220531 220693 -144061796 + MIR3 SINE MIR 3 159 -49 248 246 184 9 chr12 220711 220825 -144061664 + MER117 DNA MER1_type 55 188 -9 181 260 14 41 chr12 221695 221768 -144060721 + L2 LINE L2 3201 3271 -1 502 232 271 34 chr12 221821 221998 -144060491 + MIR SINE MIR 44 262 0 180 0 0 0 chr12 222082 222102 -144060387 + (TGG)n Simple_repeat Simple_repeat 1 20 0 534 349 28 8 chr12 222125 222380 -144060109 + MLT1L LTR MaLR 339 598 -17 181 262 119 12 chr12 224420 224504 -144057985 - L3 LINE CR1 -3 1574 1482 281 277 43 11 chr12 224874 224968 -144057521 + MIR SINE MIR 34 130 -132 391 311 155 24 chr12 225131 225337 -144057152 + L3 LINE CR1 1333 1565 -12 656 287 124 13 chr12 226070 226384 -144056105 + MLT1K LTR MaLR 240 588 0 1392 24 0 0 chr12 227463 227627 -144054862 + (TCCA)n Simple_repeat Simple_repeat 4 167 0 318 280 21 44 chr12 227942 228163 -144054326 + GA-rich Low_complexity Low_complexity 1 215 0 957 168 0 24 chr12 228837 229004 -144053485 + FRAM SINE Alu 2 164 -2 350 305 0 38 chr12 229020 229125 -144053364 + HAL1b LINE L1 1245 1345 -3 230 174 0 22 chr12 229557 229603 -144052886 + GA-rich Low_complexity Low_complexity 3 47 0 349 149 19 93 chr12 229646 229753 -144052736 - L1MA5 LINE L1 0 6300 6202 185 309 128 43 chr12 230190 230284 -144052205 - L3 LINE CR1 -72 1505 1404 314 370 45 19 chr12 230298 230452 -144052037 + L1ME4a LINE L1 5852 6009 -112 2528 40 7 0 chr12 230522 230825 -144051664 - AluY SINE Alu -5 306 2 225 286 0 0 chr12 230874 230923 -144051566 - L3 LINE CR1 -193 1384 1336 443 293 14 7 chr12 231765 231912 -144050577 + MER63A DNA MER1_type 63 210 0 435 371 38 24 chr12 232695 232908 -144049581 + L2 LINE L2 3098 3313 0 1611 131 35 46 chr12 233473 233756 -144048733 - AluJb SINE Alu 0 312 33 21 36 0 0 chr12 233903 233931 -144048558 + GC_rich Low_complexity Low_complexity 1 28 0 27 29 0 0 chr12 234209 234243 -144048246 + GC_rich Low_complexity Low_complexity 1 34 0 559 257 115 40 chr12 235814 236040 -144046449 - MIR SINE MIR -15 247 5 494 295 81 59 chr12 236115 236489 -144046000 - L1ME4a LINE L1 -133 5988 5601 2529 182 25 2 chr12 236489 236934 -144045555 - L1MB3 LINE L1 -10 6173 5719 494 295 81 59 chr12 236934 237016 -144045473 - L1ME4a LINE L1 -520 5601 5522 24 0 0 0 chr12 237984 238008 -144044481 + AT_rich Low_complexity Low_complexity 1 24 0 1102 229 15 4 chr12 238996 239258 -144043231 + L1MB8 LINE L1 5874 6138 -40 685 312 113 27 chr12 239325 239890 -144042599 + L2 LINE L2 2700 3311 -2 237 282 141 0 chr12 239966 240037 -144042452 - MIR SINE MIR -65 197 117 209 373 13 0 chr12 240035 240110 -144042379 - MIR3 SINE MIR -130 78 3 * 331 307 81 32 chr12 240577 240763 -144041726 - MIR3 SINE MIR -56 206 12 297 269 81 62 chr12 242226 242386 -144040103 - MIR SINE MIR -1 261 99 307 261 49 12 chr12 242462 242588 -144039901 + MIR SINE MIR 64 200 -62 195 42 0 0 chr12 242936 242960 -144039529 + (TAAAAA)n Simple_repeat Simple_repeat 1 24 0 347 354 111 0 chr12 243065 243209 -144039280 + L3b LINE CR1 1321 1480 -103 243 291 0 0 chr12 244850 244905 -144037584 + C-rich Low_complexity Low_complexity 5 59 0 659 262 38 29 chr12 247303 247513 -144034976 - MIR SINE MIR -50 212 1 1326 90 4 0 chr12 247621 247855 -144034634 + (TGGA)n Simple_repeat Simple_repeat 1 236 0 2422 51 0 3 chr12 248072 248368 -144034121 + AluY SINE Alu 1 295 -16 486 207 83 0 chr12 248577 248698 -144033791 - MIR SINE MIR -86 176 46 186 43 0 0 chr12 249120 249143 -144033346 + (CCCCCA)n Simple_repeat Simple_repeat 2 24 0 713 238 117 26 chr12 252401 252632 -144029857 + MIR SINE MIR 9 260 -2 329 344 4 19 chr12 252667 252791 -144029698 + MIR SINE MIR 39 149 -59 234 378 0 0 chr12 253216 253298 -144029191 + L3b LINE CR1 1330 1411 -172 21 0 0 0 chr12 253833 253854 -144028635 + AT_rich Low_complexity Low_complexity 1 21 0 2098 123 0 13 chr12 255786 256094 -144026395 + AluSx SINE Alu 1 304 -8 229 213 5 190 chr12 256399 256615 -144025874 + L1MC4a LINE L1 5881 6056 -1752 539 217 109 22 chr12 257544 257682 -144024807 - MER6 DNA MER2_type 0 865 -5 203 272 48 97 chr12 259216 259319 -144023170 + MER5A DNA MER1_type 57 165 -24 641 278 20 7 chr12 260792 260943 -144021546 + MIR SINE MIR 2 154 -108 464 314 149 0 chr12 261093 261281 -144021208 + MIR SINE MIR 41 256 -6 244 204 9 157 chr12 262196 262304 -144020185 + L2 LINE L2 3220 3311 -2 435 288 108 0 chr12 262427 262566 -144019923 + MIR SINE MIR 104 257 -5 1579 97 4 25 chr12 264272 264510 -144017979 + MER41B LTR ERV1 1 233 -402 2656 108 18 13 chr12 264611 264890 -144017599 + MER41B LTR ERV1 236 520 -115 2113 106 0 0 chr12 264890 265236 -144017253 - AluSx SINE Alu 0 346 1 2656 108 18 13 chr12 265236 265353 -144017136 + MER41B LTR ERV1 520 635 0 6576 54 143 70 chr12 265792 266884 -144015605 + MER11A LTR ERVK 1 1266 0 219 125 175 0 chr12 266961 267001 -144015488 + L2 LINE L2 3267 3313 0 390 290 100 40 chr12 268794 268994 -144013495 + MIR SINE MIR 10 221 -41 500 264 156 27 chr12 269180 269514 -144012975 + L2 LINE L2 2497 2873 -441 954 267 83 55 chr12 269734 270191 -144012298 + L2 LINE L2 2843 3312 -1 1730 166 0 3 chr12 270631 270921 -144011568 - AluSx SINE Alu -21 291 3 423 218 99 14 chr12 270951 271093 -144011396 - L2 LINE L2 -1 3312 3159 2289 94 0 0 chr12 271442 271750 -144010739 + AluSg1 SINE Alu 1 308 -1 524 182 91 16 chr12 271884 272005 -144010484 - MER3 DNA MER1_type -4 205 76 229 148 37 111 chr12 272056 272110 -144010379 + MER3 DNA MER1_type 159 208 -1 * 451 174 43 65 chr12 272110 272154 -144010335 - MER3 DNA MER1_type -167 42 1 861 229 29 14 chr12 272252 272559 -144009930 + MER7A DNA MER2_type 1 337 0 569 129 11 11 chr12 272578 272671 -144009818 + Tigger2a DNA MER2_type 1 93 -341 374 243 0 0 chr12 273213 273287 -144009202 + FRAM/FAM SINE Alu 8 81 -85 243 163 20 0 chr12 273305 273354 -144009135 + L1MD3 LINE L1 7933 7982 -13 2085 99 0 17 chr12 273431 273733 -144008756 - AluSq SINE Alu -16 297 1 1871 166 78 24 chr12 274658 274825 -144007664 + MSTD LTR MaLR 1 158 -238 1885 131 3 17 chr12 274825 275122 -144007367 + AluJb SINE Alu 1 293 -19 1871 166 78 24 chr12 275122 275327 -144007162 + MSTD LTR MaLR 158 393 -3 5530 233 70 43 chr12 275445 275818 -144006671 + L1ME2 LINE L1 338 699 -5697 2199 116 0 0 chr12 275818 276121 -144006368 + AluSg SINE Alu 1 303 -7 1984 94 0 57 chr12 276121 276254 -144006235 + AluSc SINE Alu 1 140 -165 2247 78 0 3 chr12 276254 276547 -144005942 + AluY SINE Alu 1 292 -19 243 0 0 0 chr12 276551 276578 -144005911 + (TAAA)n Simple_repeat Simple_repeat 2 28 0 1984 94 0 57 chr12 276578 276761 -144005728 + AluSc SINE Alu 143 305 0 5530 233 70 43 chr12 276761 277145 -144005344 + L1ME2 LINE L1 699 1071 -5325 2280 117 0 0 chr12 277145 277454 -144005035 + AluSx SINE Alu 2 310 -2 5530 233 70 43 chr12 277454 278713 -144003776 + L1ME2 LINE L1 1071 2413 -3983 813 77 15 15 chr12 278713 278843 -144003646 + AluY SINE Alu 175 304 -7 9252 197 56 77 chr12 278844 281325 -144001164 + L1ME2 LINE L1 2362 4895 -1320 2170 66 0 0 chr12 281325 281596 -144000893 + AluY SINE Alu 33 303 -8 9252 197 56 77 chr12 281596 282091 -144000398 + L1ME2 LINE L1 4895 5272 -943 1659 146 0 71 chr12 282091 282413 -144000076 + AluJb SINE Alu 3 301 -11 9252 197 56 77 chr12 282413 282515 -143999974 + L1ME2 LINE L1 5272 5375 -840 315 273 108 0 chr12 282498 282637 -143999852 + L1ME2 LINE L1 5879 6032 -201 * 677 216 34 91 chr12 282658 282922 -143999567 + L1ME1 LINE L1 5899 6147 -19 1391 233 166 17 chr12 284761 285280 -143997209 + L2 LINE L2 1793 2388 -926 911 120 0 0 chr12 285283 285408 -143997081 + AluSq/x SINE Alu 1 125 -188 394 219 0 12 chr12 285434 285516 -143996973 + L2 LINE L2 2376 2456 -858 310 259 24 12 chr12 285487 285572 -143996917 - L2 LINE L2 -694 2620 2535 * 231 240 20 0 chr12 285696 285746 -143996743 - L2 LINE L2 -824 2490 2440 * 1119 236 97 95 chr12 285722 285834 -143996655 + L2 LINE L2 2609 2719 -594 2058 100 0 0 chr12 285834 286113 -143996376 + AluSx SINE Alu 3 281 -31 1119 236 97 95 chr12 286113 286722 -143995767 + L2 LINE L2 2719 3311 -2 728 281 41 27 chr12 289849 290070 -143992419 - MIR SINE MIR -38 224 1 241 304 107 14 chr12 290070 290182 -143992307 + MIR3 SINE MIR 79 204 -4 571 299 103 11 chr12 290889 291170 -143991319 + L1ME4a LINE L1 5610 5916 -205 676 264 83 25 chr12 291612 291840 -143990649 - MIR SINE MIR -8 254 5 2337 69 7 0 chr12 292063 292366 -143990123 + AluSq SINE Alu 1 305 -8 476 301 46 36 chr12 292641 292837 -143989652 + MIR SINE MIR 7 204 -58 216 97 0 0 chr12 293361 293392 -143989097 + (TCCCC)n Simple_repeat Simple_repeat 4 34 0 22 0 0 0 chr12 293913 293935 -143988554 + AT_rich Low_complexity Low_complexity 1 22 0 184 298 53 43 chr12 294144 294238 -143988251 + MIR SINE MIR 1 95 -167 3649 189 36 69 chr12 295866 296042 -143986447 + L1MC4a LINE L1 6888 7068 -740 664 178 85 8 chr12 296042 296160 -143986329 + FLAM_A SINE Alu 1 127 -6 3649 189 36 69 chr12 296160 296934 -143985555 + L1MC4a LINE L1 7068 7806 -2 1509 187 11 14 chr12 297129 297452 -143985037 - AluJo SINE Alu 0 322 1 725 312 16 28 chr12 297516 297766 -143984723 - MIR SINE MIR -10 252 6 2442 208 110 4 chr12 298577 299131 -143983358 - MER90 LTR ERV1 -1 613 1 617 250 0 59 chr12 299445 299597 -143982892 - MER5B DNA MER1_type -35 143 1 522 303 113 5 chr12 299606 299827 -143982662 - L3b LINE CR1 -235 1348 1104 482 365 6 6 chr12 300136 300303 -143982186 + MIR3 SINE MIR 20 186 -22 1843 82 49 98 chr12 300626 300954 -143981535 - AluSq SINE Alu -1 312 1 478 279 71 22 chr12 301028 301228 -143981261 - MIR SINE MIR -39 223 7 772 231 17 12 chr12 301228 301401 -143981088 + MER69A DNA AcHobo 4 177 0 290 131 262 0 chr12 303407 303468 -143979021 - MADE1 DNA Mariner -2 78 2 2080 211 117 20 chr12 303542 304083 -143978406 + MLT1E LTR MaLR 1 593 0 425 311 147 3 chr12 304226 304512 -143977977 + L1ME4a LINE L1 4965 5291 -855 388 236 145 37 chr12 304513 304755 -143977734 + L1ME4a LINE L1 5785 6052 -69 645 241 101 18 chr12 305327 305555 -143976934 + L1MB8 LINE L1 5932 6178 0 1803 113 0 8 chr12 305626 305873 -143976616 - AluSx SINE Alu -21 291 47 276 352 124 48 chr12 306009 306259 -143976230 + L3 LINE CR1 1099 1367 -210 955 204 11 0 chr12 306327 306513 -143975976 - MER5A DNA MER1_type -1 188 1 287 343 57 0 chr12 306732 306837 -143975652 - L2 LINE L2 -3 3310 3200 211 239 43 0 chr12 306912 306958 -143975531 - L2 LINE L2 -272 3041 2994 1208 123 16 0 chr12 307467 307654 -143974835 + L1PB1 LINE L1 5957 6146 -5 247 347 245 18 chr12 307824 309263 -143973226 - L2 LINE L2 -1231 2083 319 226 327 26 44 chr12 309912 310025 -143972464 + L3 LINE CR1 1449 1559 -18 422 230 120 0 chr12 312612 312712 -143969777 - FLAM_A SINE Alu -30 112 1 180 125 0 0 chr12 314636 314668 -143967821 + (TA)n Simple_repeat Simple_repeat 2 33 0 421 295 84 12 chr12 317339 317505 -143964984 + MIR SINE MIR 64 241 -21 422 274 85 24 chr12 317584 317748 -143964741 + MER5A DNA MER1_type 1 174 -15 599 202 9 0 chr12 319210 319319 -143963170 + MER81 DNA DNA 5 114 0 21 0 0 0 chr12 319623 319644 -143962845 + AT_rich Low_complexity Low_complexity 1 21 0 26 50 0 0 chr12 319776 319816 -143962673 + AT_rich Low_complexity Low_complexity 1 40 0 1183 143 0 0 chr12 319979 320154 -143962335 + FRAM SINE Alu 1 167 -9 279 79 0 0 chr12 320311 320349 -143962140 + (T)n Simple_repeat Simple_repeat 1 38 0 859 186 17 29 chr12 320366 320538 -143961951 - FAM SINE Alu -5 170 1 587 311 33 6 chr12 321809 321989 -143960500 + MIR3 SINE MIR 3 187 -21 2196 105 0 10 chr12 322320 322624 -143959865 - AluSq SINE Alu -12 301 1 1394 172 22 0 chr12 323640 323907 -143958582 + L1MB4 LINE L1 5908 6180 0 2233 103 0 0 chr12 323915 324207 -143958282 + AluSx SINE Alu 1 292 -20 208 278 0 19 chr12 324882 324936 -143957553 + MIR SINE MIR 88 140 -122 278 251 50 112 chr12 325156 325335 -143957154 + MIR SINE MIR 36 203 -59 467 203 11 16 chr12 325647 325829 -143956660 + GA-rich Low_complexity Low_complexity 1 181 0 2194 102 0 10 chr12 326455 326758 -143955731 + AluSq SINE Alu 1 300 -13 430 319 112 11 chr12 327070 327258 -143955231 + L3 LINE CR1 1370 1576 -1 768 244 45 61 chr12 327796 328319 -143954170 + PABL_B LTR ERV1 1 667 0 30489 87 12 9 chr12 328405 334082 -143948407 + L1PA7 LINE L1 748 6467 -2 531 174 83 38 chr12 334280 334412 -143948077 + MER6B DNA MER2_type 1 138 -72 180 0 0 0 chr12 334865 334885 -143947604 + (T)n Simple_repeat Simple_repeat 1 20 0 235 135 0 0 chr12 334920 334957 -143947532 + tRNA-Cys-TGC tRNA tRNA 1 37 -38 23 54 0 0 chr12 335680 335717 -143946772 + AT_rich Low_complexity Low_complexity 1 37 0 2065 134 10 13 chr12 336388 336693 -143945796 - AluJb SINE Alu -8 304 1 2158 127 0 0 chr12 336879 337179 -143945310 + AluSx SINE Alu 1 300 -12 449 292 120 23 chr12 338662 338878 -143943611 + MIR SINE MIR 20 256 -6 378 304 113 16 chr12 339383 339577 -143942912 + L1ME LINE L1 5552 5764 -357 527 165 11 0 chr12 339578 339669 -143942820 + MER6 DNA MER2_type 1 92 -773 * 1460 136 54 7 chr12 339661 339940 -143942549 + MER6 DNA MER2_type 574 865 0 887 273 23 19 chr12 340441 340701 -143941788 - MIR SINE MIR 0 262 2 1836 152 3 13 chr12 340767 341069 -143941420 + AluJb SINE Alu 1 299 -13 340 163 98 11 chr12 341672 341764 -143940725 - LTR37A LTR ERV1 -54 372 273 918 87 0 0 chr12 341780 341895 -143940594 + AluSq/x SINE Alu 1 115 -197 2279 99 0 0 chr12 342170 342464 -143940025 + AluSx SINE Alu 1 294 -18 229 175 0 0 chr12 342923 342963 -143939526 + HAL1b LINE L1 859 898 -450 1042 194 142 36 chr12 343046 343376 -143939113 - Tigger5 DNA MER2_type -1 2322 1 286 186 69 98 chr12 343694 343796 -143938693 - MIR SINE MIR -56 206 108 24 0 0 0 chr12 343814 343838 -143938651 + AT_rich Low_complexity Low_complexity 1 24 0 239 336 69 8 chr12 343838 343969 -143938520 - MIR SINE MIR -122 140 2 321 241 51 0 chr12 344543 344622 -143937867 - L2 LINE L2 -31 3282 3200 2033 108 28 0 chr12 344626 344913 -143937576 - AluY SINE Alu -16 295 1 433 334 36 81 chr12 345084 345490 -143936999 - L2 LINE L2 -229 3043 2652 316 237 11 22 chr12 345600 345710 -143936779 + L1M2 LINE L1 1574 2060 -4323 1774 168 0 10 chr12 345710 346002 -143936487 + AluSx SINE Alu 1 289 -23 412 329 90 40 chr12 346106 346550 -143935939 - L2 LINE L2 -814 2500 2035 562 270 85 10 chr12 346629 346829 -143935660 + L2 LINE L2 3084 3298 -15 229 329 183 25 chr12 347294 347441 -143935048 + MIR3 SINE MIR 1 166 -74 1420 310 176 19 chr12 349086 349892 -143932597 - L2 LINE L2 -1 3312 2633 1709 171 0 11 chr12 349892 350200 -143932289 + AluJb SINE Alu 6 310 0 1420 310 176 19 chr12 350200 350631 -143931858 - L2 LINE L2 -680 2633 1876 2221 105 3 3 chr12 350633 350939 -143931550 + AluSx SINE Alu 1 306 -6 1195 263 60 75 chr12 352231 352816 -143929673 - L2 LINE L2 0 3313 2738 306 87 0 0 chr12 353629 353675 -143928814 + (A)n Simple_repeat Simple_repeat 1 46 0 1485 192 45 14 chr12 354443 354729 -143927760 + AluJo SINE Alu 1 295 -17 2297 122 0 0 chr12 355009 355313 -143927176 + AluSx SINE Alu 1 304 -8 1865 154 33 3 chr12 355821 356120 -143926369 + AluSx SINE Alu 3 310 -2 2150 130 0 0 chr12 356150 356450 -143926039 + AluSx SINE Alu 1 300 -12 2545 60 0 13 chr12 356998 357313 -143925176 + AluY SINE Alu 1 311 0 23 54 0 0 chr12 357796 357833 -143924656 + AT_rich Low_complexity Low_complexity 1 37 0 2110 130 7 0 chr12 357846 358145 -143924344 + AluSx SINE Alu 1 301 -11 1717 183 0 10 chr12 358149 358439 -143924050 + AluJo SINE Alu 1 287 -25 831 221 6 0 chr12 358474 358632 -143923857 + L1MA10 LINE L1 6175 6333 -1 24 32 0 0 chr12 359796 359827 -143922662 + AT_rich Low_complexity Low_complexity 1 31 0 288 0 0 0 chr12 360473 360505 -143921984 + (TG)n Simple_repeat Simple_repeat 2 33 0 355 91 0 232 chr12 361700 361799 -143920690 + MADE1 DNA Mariner 3 78 -2 193 122 0 61 chr12 361907 361956 -143920533 + (GGAA)n Simple_repeat Simple_repeat 3 48 0 21 0 0 0 chr12 362384 362405 -143920084 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr12 362860 362881 -143919608 + AT_rich Low_complexity Low_complexity 1 21 0 2016 156 0 0 chr12 363555 363879 -143918610 + AluJo SINE Alu 1 324 0 26 0 0 0 chr12 364920 364946 -143917543 + AT_rich Low_complexity Low_complexity 1 26 0 241 172 58 23 chr12 365493 365580 -143916909 + L1MEd LINE L1 55 144 -5975 886 171 19 6 chr12 365763 365921 -143916568 + Charlie1b DNA MER1_type 52 211 -312 273 266 95 25 chr12 366015 366173 -143916316 + L1MEd LINE L1 927 1095 -5024 2468 84 0 3 chr12 366178 366487 -143916002 + AluSq SINE Alu 1 308 -5 2027 139 10 0 chr12 366495 366796 -143915693 + AluJb SINE Alu 1 304 -8 1734 135 24 0 chr12 367016 367268 -143915221 + AluSx SINE Alu 40 297 -15 2177 135 154 5 chr12 367371 367742 -143914747 + MSTA LTR MaLR 1 426 -2 2309 101 10 0 chr12 368065 368361 -143914128 - AluSq SINE Alu -14 299 1 281 160 27 40 chr12 368370 368445 -143914044 - L1MC5 LINE L1 -35 7926 7853 2529 185 70 39 chr12 368499 369044 -143913445 + MER68 LTR ERV1 1 562 0 2340 78 7 0 chr12 369319 369614 -143912875 + AluSp SINE Alu 4 300 -13 957 229 97 64 chr12 370174 370294 -143912195 + MLT1F LTR MaLR 10 125 -417 1967 149 0 10 chr12 370294 370596 -143911893 - AluJb SINE Alu -13 299 1 957 229 97 64 chr12 370596 370832 -143911657 + MLT1F LTR MaLR 125 439 -103 2366 95 0 3 chr12 370832 371138 -143911351 + AluSg SINE Alu 1 305 -5 957 229 97 64 chr12 371138 371239 -143911250 + MLT1F LTR MaLR 439 535 -7 916 237 62 16 chr12 371940 372038 -143910451 + L1M1 LINE L1 3384 3476 -4089 2018 160 3 0 chr12 372038 372345 -143910144 + AluSg SINE Alu 1 308 -2 916 237 62 16 chr12 372345 372605 -143909884 + L1M1 LINE L1 3476 3758 -3807 2250 100 0 7 chr12 372879 373180 -143909309 - AluSx SINE Alu -13 299 1 23 0 0 0 chr12 373189 373212 -143909277 + AT_rich Low_complexity Low_complexity 1 23 0 38608 80 12 8 chr12 373215 379337 -143903152 + L1PA6 LINE L1 2 6152 -2 2215 114 3 0 chr12 379440 379738 -143902751 - AluSq SINE Alu -14 299 1 2476 68 0 0 chr12 379749 380042 -143902447 - AluSg1 SINE Alu -12 297 5 476 252 148 0 chr12 380125 380240 -143902249 - FLAM_C SINE Alu 0 133 2 2225 95 10 0 chr12 380266 380561 -143901928 + AluSp SINE Alu 1 298 -15 2161 106 31 0 chr12 380573 380865 -143901624 + AluSx SINE Alu 1 301 -11 2596 59 0 0 chr12 381589 381909 -143900580 - L1PA7 LINE L1 -111 6043 5724 1013 118 0 0 chr12 382105 382240 -143900249 + AluSq/x SINE Alu 1 135 -178 2438 97 0 0 chr12 382240 382549 -143899940 + AluSx SINE Alu 1 309 -3 1520 168 60 3 chr12 383481 383766 -143898723 + AluJb SINE Alu 1 301 -11 2306 95 0 3 chr12 384059 384355 -143898134 + AluSc SINE Alu 1 295 -14 25 75 0 0 chr12 384656 384709 -143897780 + AT_rich Low_complexity Low_complexity 1 53 0 2343 78 10 0 chr12 384905 385198 -143897291 + AluY SINE Alu 1 296 -15 561 254 101 32 chr12 385694 385911 -143896578 - MIR SINE MIR 0 262 31 1634 155 18 14 chr12 387417 387694 -143894795 + AluJb SINE Alu 1 278 -34 1169 189 5 5 chr12 387722 387939 -143894550 + AluJo SINE Alu 85 301 -11 2499 85 0 0 chr12 387966 388273 -143894216 + AluSg SINE Alu 1 307 -3 394 306 107 40 chr12 388320 388572 -143893917 + MLT1L LTR MaLR 343 611 -4 2000 143 3 16 chr12 389109 389423 -143893066 + AluSg SINE Alu 1 310 0 671 189 56 103 chr12 389548 389781 -143892708 + L1MC4a LINE L1 6526 6747 -1061 186 270 16 48 chr12 389800 389863 -143892626 - L2 LINE L2 -799 2515 2455 1653 172 35 0 chr12 389888 390173 -143892316 + AluJb SINE Alu 1 295 -17 518 167 9 0 chr12 390187 390295 -143892194 + GA-rich Low_complexity Low_complexity 1 109 0 2016 134 10 3 chr12 390412 390702 -143891787 + AluSx SINE Alu 1 292 -20 344 331 165 36 chr12 390706 391465 -143891024 - L2 LINE L2 -1073 2241 1385 2379 85 0 0 chr12 391617 391912 -143890577 - AluY SINE Alu -16 295 1 521 199 38 61 chr12 393233 393364 -143889125 + FLAM_A SINE Alu 1 128 -5 3894 196 73 37 chr12 393616 394608 -143887881 + L1ME1 LINE L1 4550 5505 -661 2204 110 0 17 chr12 394608 394909 -143887580 + AluSx SINE Alu 1 296 -16 3894 196 73 37 chr12 394909 394922 -143887567 + L1ME1 LINE L1 5505 5516 -650 2399 72 16 0 chr12 394922 395227 -143887262 + AluY SINE Alu 1 310 -1 3894 196 73 37 chr12 395227 395479 -143887010 + L1ME1 LINE L1 5516 5757 -409 1920 150 0 3 chr12 395479 395772 -143886717 - AluJb SINE Alu -20 292 1 3894 196 73 37 chr12 395772 396083 -143886406 + L1ME1 LINE L1 5757 6161 -5 244 195 11 46 chr12 396847 396934 -143885555 + A-rich Low_complexity Low_complexity 4 87 0 1882 145 76 0 chr12 397246 397563 -143884926 + MER7A DNA MER2_type 1 339 -7 1513 153 16 70 chr12 397687 397833 -143884656 + AluJo SINE Alu 1 123 -189 1838 160 0 17 chr12 397833 398133 -143884356 + AluSx SINE Alu 1 295 -17 1513 153 16 70 chr12 398133 398299 -143884190 + AluJo SINE Alu 123 296 -16 1842 187 58 7 chr12 398302 398764 -143883725 + L1MB4 LINE L1 5594 6132 -48 492 197 50 131 chr12 398806 398868 -143883621 + MIR SINE MIR 29 94 -168 2072 109 13 3 chr12 398868 399170 -143883319 + AluSx SINE Alu 1 305 -7 492 197 50 131 chr12 399170 399305 -143883184 + MIR SINE MIR 94 210 -52 997 264 96 84 chr12 399715 400203 -143882286 - L2 LINE L2 -5 3308 2815 2195 123 0 7 chr12 400529 400838 -143881651 + AluSx SINE Alu 1 307 -5 37724 58 10 3 chr12 401031 407137 -143875352 - L1PA5 LINE L1 0 6154 11 502 228 228 0 chr12 407460 407618 -143874871 + HAL1 LINE L1 271 464 -2043 2097 239 113 16 chr12 407653 408394 -143874095 + HAL1 LINE L1 1185 1997 -510 21 36 0 0 chr12 408402 408430 -143874059 + AT_rich Low_complexity Low_complexity 1 28 0 795 267 71 8 chr12 408499 408694 -143873795 + HAL1 LINE L1 2253 2467 -40 1579 169 38 28 chr12 408694 408984 -143873505 - AluJo SINE Alu -19 293 1 795 267 71 8 chr12 408984 409028 -143873461 + HAL1 LINE L1 2467 2507 0 2458 70 0 3 chr12 409095 409395 -143873094 + AluY SINE Alu 1 299 -12 862 199 45 30 chr12 409764 409965 -143872524 + L1ME3 LINE L1 5959 6162 0 196 241 0 37 chr12 410336 410390 -143872099 + L3b LINE CR1 1532 1583 0 1924 131 31 3 chr12 410405 410696 -143871793 + AluSx SINE Alu 1 299 -13 2028 134 0 23 chr12 410852 411151 -143871338 + AluSx SINE Alu 1 292 -20 23 65 0 16 chr12 411190 411222 -143871267 + AT_rich Low_complexity Low_complexity 1 33 -28 1944 122 3 40 chr12 411222 411406 -143871083 - AluSq SINE Alu -21 292 122 2371 91 3 10 chr12 411406 411713 -143870776 - AluSp SINE Alu -8 305 1 1944 122 3 40 chr12 411713 411831 -143870658 - AluSq SINE Alu -191 122 1 23 65 0 16 chr12 411831 411860 -143870629 + AT_rich Low_complexity Low_complexity 33 61 0 1845 154 0 14 chr12 412236 412522 -143869967 - AluJo SINE Alu -22 290 9 1597 119 5 0 chr12 412569 412787 -143869702 + AluSp SINE Alu 1 219 -94 829 100 0 0 chr12 412787 412897 -143869592 + AluSp/q SINE Alu 188 297 -16 28 61 0 0 chr12 412921 412970 -143869519 + AT_rich Low_complexity Low_complexity 1 49 0 2085 115 3 26 chr12 413064 413369 -143869120 + AluSg SINE Alu 1 298 -12 1993 155 0 10 chr12 413632 413936 -143868553 - AluJb SINE Alu -11 301 1 23 33 0 0 chr12 414061 414091 -143868398 + AT_rich Low_complexity Low_complexity 1 30 0 1311 88 0 0 chr12 414174 414334 -143868155 - AluSp SINE Alu -19 294 135 1394 151 138 30 chr12 414633 414937 -143867552 + MER1B DNA MER1_type 1 337 0 2307 75 31 0 chr12 415327 415620 -143866869 + AluSx SINE Alu 1 302 -10 25 102 0 0 chr12 415799 415887 -143866602 + AT_rich Low_complexity Low_complexity 1 88 0 2588 120 31 2 chr12 416567 416984 -143865505 - Tigger4(Zombi) DNA MER2_type 0 2731 2303 862 159 0 0 chr12 416985 417117 -143865372 + FLAM_C SINE Alu 2 133 0 287 150 0 67 chr12 417125 417185 -143865304 - Tigger4(Zombi) DNA MER2_type -2675 56 1 257 288 194 12 chr12 418392 418552 -143863937 - MER5A DNA MER1_type 0 189 1 240 143 0 0 chr12 419968 420010 -143862479 + (CGAGG)n Simple_repeat Simple_repeat 4 45 0 182 297 94 0 chr12 420482 420546 -143861943 + L2 LINE L2 2380 2449 -865 1572 183 34 10 chr12 420900 421156 -143861333 + MLT2D LTR ERVL 113 378 -36 225 0 0 0 chr12 421156 421181 -143861308 + (CA)n Simple_repeat Simple_repeat 2 26 0 1572 183 34 10 chr12 421181 421219 -143861270 + MLT2D LTR ERVL 378 414 0 920 255 91 25 chr12 421223 421543 -143860946 - MLT1H LTR MaLR -182 413 45 2257 104 0 10 chr12 421591 421889 -143860600 + AluSq SINE Alu 3 297 -16 5225 166 121 35 chr12 422825 422881 -143859608 - Charlie1a DNA MER1_type -1306 1455 1405 2311 95 0 3 chr12 422881 423177 -143859312 + AluSx SINE Alu 1 295 -17 5225 166 121 35 chr12 423177 423525 -143858964 - Charlie1a DNA MER1_type -1356 1405 1088 1598 152 47 34 chr12 423525 423822 -143858667 - AluJo SINE Alu -1 311 11 5225 166 121 35 chr12 423822 423957 -143858532 - Charlie1a DNA MER1_type -1673 1088 966 2257 105 3 0 chr12 423957 424251 -143858238 - AluSx SINE Alu -17 295 1 5225 166 121 35 chr12 424251 424969 -143857520 - Charlie1a DNA MER1_type -1795 966 88 532 192 60 60 chr12 425242 425424 -143857065 - L2 LINE L2 0 3313 3132 1652 192 0 38 chr12 425490 425808 -143856681 - AluJo SINE Alu -6 306 1 203 77 0 26 chr12 425971 426010 -143856479 + (TAAAAA)n Simple_repeat Simple_repeat 2 39 0 2125 147 0 0 chr12 426031 426343 -143856146 + AluSx SINE Alu 1 312 0 837 187 0 0 chr12 426359 426493 -143855996 + FLAM_A SINE Alu 6 139 -3 2354 103 0 0 chr12 426529 426839 -143855650 + AluSx SINE Alu 1 310 -2 999 145 22 34 chr12 426855 427034 -143855455 - MER2 DNA MER2_type -168 177 1 1328 116 0 37 chr12 427337 427526 -143854963 - AluSg/x SINE Alu -23 289 108 635 85 0 0 chr12 427526 427608 -143854881 + AluSg1 SINE Alu 16 97 -212 187 286 0 18 chr12 427629 427685 -143854804 - L2 LINE L2 -665 2649 2595 4174 109 27 56 chr12 427872 428073 -143854416 - Tigger1 DNA MER2_type 0 2418 2213 2352 79 0 0 chr12 428073 428365 -143854124 - AluY SINE Alu -19 292 1 4174 109 27 56 chr12 428365 428863 -143853626 - Tigger1 DNA MER2_type -205 2213 1739 1036 65 0 0 chr12 428863 428987 -143853502 - AluSg/x SINE Alu -16 294 171 10588 122 20 44 chr12 428987 429178 -143853311 - Tigger1 DNA MER2_type -673 1745 1551 1715 171 31 3 chr12 429178 429471 -143853018 - AluJb SINE Alu -11 301 1 10588 122 20 44 chr12 429471 429595 -143852894 - Tigger1 DNA MER2_type -867 1551 1426 2271 92 10 3 chr12 429595 429889 -143852600 - AluSp SINE Alu -17 296 1 10588 122 20 44 chr12 429889 431340 -143851149 - Tigger1 DNA MER2_type -992 1426 19 212 190 70 10 chr12 432410 432482 -143850007 + MIR SINE MIR 113 189 -73 219 345 42 48 chr12 433114 433427 -143849062 - L2 LINE L2 -698 2616 2306 459 251 276 5 chr12 433705 433908 -143848581 - MIR SINE MIR 0 262 5 1874 162 7 0 chr12 433908 434211 -143848278 - AluJb SINE Alu -7 305 1 875 193 85 0 chr12 434222 434398 -143848091 - AluJo SINE Alu -24 288 98 2074 104 20 17 chr12 434458 434755 -143847734 + AluSx SINE Alu 3 300 -12 764 149 0 0 chr12 434906 435020 -143847469 + FLAM_C SINE Alu 2 115 -28 2376 93 3 0 chr12 435141 435441 -143847048 - AluSp SINE Alu -12 301 1 1848 159 57 21 chr12 435499 435882 -143846607 + L1MB8 LINE L1 5782 6178 0 2154 264 50 57 chr12 436192 436336 -143846153 - L2 LINE L2 -29 3284 3141 1848 153 32 0 chr12 436336 436618 -143845871 - AluJb SINE Alu -10 302 12 2154 264 50 57 chr12 436618 437084 -143845405 - L2 LINE L2 -172 3141 2673 2191 117 0 0 chr12 437084 437367 -143845122 + AluSx SINE Alu 1 283 -29 2154 264 50 57 chr12 437367 437445 -143845044 - L2 LINE L2 -640 2673 2596 600 228 8 0 chr12 437445 437572 -143844917 + FLAM_C SINE Alu 2 129 -4 2154 264 50 57 chr12 437572 438038 -143844451 - L2 LINE L2 -717 2596 2148 2542 72 0 0 chr12 438202 438506 -143843983 - AluY SINE Alu -7 304 1 591 156 0 0 chr12 438985 439081 -143843408 - FLAM_A SINE Alu -42 100 5 2422 80 0 22 chr12 439343 439655 -143842834 + AluSg SINE Alu 1 305 -5 915 166 13 6 chr12 439943 440100 -143842389 - FRAM SINE Alu -8 158 1 2237 109 0 13 chr12 440133 440436 -143842053 + AluSg SINE Alu 1 299 -11 2082 122 0 0 chr12 440681 440967 -143841522 - AluSp SINE Alu -7 306 21 1786 156 14 0 chr12 440970 441265 -143841224 - AluSx SINE Alu -13 299 1 735 130 0 0 chr12 441365 441473 -143841016 - FLAM_A SINE Alu -11 131 24 2171 102 7 23 chr12 441596 441899 -143840590 - AluSx SINE Alu -14 298 1 886 142 0 22 chr12 441903 442037 -143840452 - FLAM_C SINE Alu -2 131 1 1228 144 13 57 chr12 442877 443106 -143839383 - MER20 DNA MER1_type 0 219 1 2568 54 0 0 chr12 443360 443657 -143838832 - AluY SINE Alu -14 297 1 2431 60 0 10 chr12 443659 443958 -143838531 - AluY SINE Alu -15 296 1 2327 93 3 3 chr12 444046 444347 -143838142 - AluSx SINE Alu -11 301 1 2108 129 0 0 chr12 444510 444796 -143837693 - AluSg SINE Alu -11 299 14 260 154 0 0 chr12 445475 445514 -143836975 + MER21B LTR ERV1 126 164 -699 237 196 39 0 chr12 445576 445627 -143836862 - ALR/Alpha Satellite centromeric -58 114 62 281 157 36 42 chr12 445693 445859 -143836630 + (TATAA)n Simple_repeat Simple_repeat 3 167 0 277 279 6 24 chr12 445862 446027 -143836462 + (TTA)n Simple_repeat Simple_repeat 3 164 0 2046 141 3 13 chr12 446050 446219 -143836270 - AluJo SINE Alu -10 302 136 2244 124 0 0 chr12 446219 446525 -143835964 - AluSq SINE Alu -7 306 1 2046 141 3 13 chr12 446525 446660 -143835829 - AluJo SINE Alu -176 136 1 1286 154 35 95 chr12 446681 446720 -143835769 - L1MB2 LINE L1 -42 6129 6089 483 90 0 0 chr12 446720 446798 -143835691 + (TG)n Simple_repeat Simple_repeat 2 79 0 351 0 0 0 chr12 446797 446836 -143835653 + (TA)n Simple_repeat Simple_repeat 1 39 0 * 1286 154 35 95 chr12 446798 446836 -143835653 - L1MB2 LINE L1 -82 6089 6050 1597 137 12 4 chr12 446836 447085 -143835404 - AluSx SINE Alu -12 300 50 1286 154 35 95 chr12 447085 447246 -143835243 - L1MB2 LINE L1 -121 6050 5953 1925 106 22 99 chr12 447246 447568 -143834921 + AluSx SINE Alu 2 298 -14 1286 154 35 95 chr12 447568 447703 -143834786 - L1MB2 LINE L1 -218 5953 5812 2099 104 46 0 chr12 448052 448332 -143834157 + AluSx SINE Alu 1 293 -19 2144 128 20 0 chr12 448456 448754 -143833735 + AluSx SINE Alu 1 304 -8 291 28 0 0 chr12 449101 449137 -143833352 + (TTCA)n Simple_repeat Simple_repeat 3 38 0 1757 168 4 0 chr12 449138 449418 -143833071 - AluSx SINE Alu -31 281 1 744 294 127 17 chr12 449465 449757 -143832732 - LTR16A LTR ERVL -6 444 121 2417 151 34 5 chr12 452206 452617 -143829872 - L1MB3 LINE L1 -13 6170 5748 1285 204 0 13 chr12 452620 452855 -143829634 - AluJb SINE Alu -80 232 1 1643 104 79 156 chr12 452855 453056 -143829433 - L1M3 LINE L1 -509 5674 5459 1974 129 3 62 chr12 453056 453381 -143829108 - AluJb SINE Alu -6 306 1 1643 104 79 156 chr12 453381 453425 -143829064 - L1M3 LINE L1 -724 5459 5413 1981 166 0 3 chr12 453425 453738 -143828751 - AluJb SINE Alu 0 312 1 1643 104 79 156 chr12 453738 453923 -143828566 - L1M3 LINE L1 -770 5413 5294 1878 143 35 0 chr12 453923 454210 -143828279 - AluJb SINE Alu -15 297 1 1643 104 79 156 chr12 454210 454309 -143828180 - L1M3 LINE L1 -889 5294 5189 241 156 0 0 chr12 454311 454356 -143828133 - AluJo SINE Alu -3 299 255 1093 178 0 70 chr12 454356 454570 -143827919 - AluJo SINE Alu -113 199 1 1387 184 0 4 chr12 454570 454842 -143827647 - L1M3 LINE L1 -979 5167 4897 2183 127 0 6 chr12 454858 455172 -143827317 - AluJb SINE Alu 0 312 1 572 293 47 14 chr12 455424 455639 -143826850 - HERV16 LTR ERVL -2409 3076 2855 1647 298 82 24 chr12 455699 455785 -143826704 - HERV16 LTR ERVL -2430 2566 2486 2221 98 3 3 chr12 455785 456104 -143826385 - AluSg SINE Alu 0 310 1 1647 298 82 24 chr12 456104 456929 -143825560 - HERV16 LTR ERVL -2510 2486 1735 2192 88 0 4 chr12 456929 457203 -143825286 + AluSg SINE Alu 25 297 -13 1647 298 82 24 chr12 457203 457370 -143825119 - HERV16 LTR ERVL -3261 1735 1579 2129 104 10 3 chr12 457417 457714 -143824775 - AluSx SINE Alu -13 299 1 859 280 206 16 chr12 457769 458133 -143824356 - LTR16A LTR ERVL -6 444 12 2354 74 3 0 chr12 458172 458481 -143824008 + AluY SINE Alu 1 310 -1 250 265 84 0 chr12 458945 459028 -143823461 - MIR SINE MIR -66 196 107 262 263 41 67 chr12 459116 459310 -143823179 - L1ME4a LINE L1 -2 6119 5931 1876 144 7 0 chr12 459405 459696 -143822793 - AluJb SINE Alu -15 297 5 24 32 0 0 chr12 459709 459740 -143822749 + AT_rich Low_complexity Low_complexity 1 31 0 614 195 0 49 chr12 459740 459863 -143822626 - FLAM_A SINE Alu -13 120 4 2117 102 3 0 chr12 459916 460234 -143822255 - AluSp SINE Alu 0 319 1 952 194 0 0 chr12 460237 460397 -143822092 - FRAM SINE Alu -16 160 1 1990 97 48 3 chr12 460738 461027 -143821462 + AluSx SINE Alu 1 302 -10 1703 159 3 38 chr12 461151 461471 -143821018 - AluSq SINE Alu -4 309 1 1612 137 47 18 chr12 462700 462978 -143819511 + AluJo SINE Alu 1 286 -26 239 67 0 0 chr12 463528 463558 -143818931 + Alu SINE Alu 1 30 -273 * 405 92 105 53 chr12 463532 463608 -143818881 + AluJ/FRAM SINE Alu 218 297 -5 224 285 58 90 chr12 464159 464286 -143818203 + L2 LINE L2 1792 1922 -1392 2089 124 3 0 chr12 464286 464593 -143817896 - AluSx SINE Alu -4 308 1 224 285 58 90 chr12 464593 464777 -143817712 + L2 LINE L2 1922 2093 -1221 196 295 137 0 chr12 464800 464895 -143817594 + L2 LINE L2 2301 2408 -906 1805 163 0 3 chr12 465699 465981 -143816508 - AluJo SINE Alu -31 281 1 2195 45 10 35 chr12 466051 466339 -143816150 - AluY SINE Alu -4 307 27 895 98 16 0 chr12 466342 466465 -143816024 - AluSq/x SINE Alu -187 125 1 1422 169 32 52 chr12 467499 467807 -143814682 + AluJo SINE Alu 1 302 -10 189 0 0 0 chr12 468686 468707 -143813782 + (TTCA)n Simple_repeat Simple_repeat 1 21 0 2012 113 0 36 chr12 468728 469037 -143813452 + AluSg SINE Alu 1 298 -12 669 311 94 26 chr12 469038 469179 -143813310 - L2 LINE L2 -13 3300 3170 2233 95 0 0 chr12 469179 469473 -143813016 + AluSx SINE Alu 1 294 -18 1767 112 4 7 chr12 469473 469741 -143812748 + AluSg SINE Alu 33 300 -10 669 311 94 26 chr12 469741 470187 -143812302 - L2 LINE L2 -142 3171 2681 23 54 0 0 chr12 472538 472575 -143809914 + AT_rich Low_complexity Low_complexity 1 37 0 1974 100 25 0 chr12 472718 472879 -143809610 - AluSq SINE Alu -25 288 116 216 0 0 0 chr12 472879 472903 -143809586 + (TTTTA)n Simple_repeat Simple_repeat 1 24 0 1974 100 25 0 chr12 472903 473022 -143809467 - AluSq SINE Alu -197 116 1 2203 102 0 0 chr12 473332 473626 -143808863 + AluSc SINE Alu 1 294 -15 236 289 96 0 chr12 473806 473889 -143808600 - MIR3 SINE MIR -3 205 115 267 305 238 7 chr12 474031 474182 -143808307 + MIR SINE MIR 2 187 -75 3940 168 58 3 chr12 474194 474938 -143807551 + L1MB7 LINE L1 5254 6038 -146 455 117 43 32 chr12 474944 475021 -143807468 + L1MB7 LINE L1 6090 6170 -14 1866 143 7 3 chr12 475021 475315 -143807174 - AluJb SINE Alu -17 295 1 455 117 43 32 chr12 475315 475331 -143807158 + L1MB7 LINE L1 6170 6184 0 1350 199 39 52 chr12 475515 475821 -143806668 - AluJo SINE Alu 0 302 1 2278 62 3 36 chr12 475831 476138 -143806351 - AluY SINE Alu -14 297 1 1477 131 84 29 chr12 476617 476891 -143805598 + AluJb SINE Alu 1 289 -23 21 36 0 0 chr12 476930 476958 -143805531 + AT_rich Low_complexity Low_complexity 1 28 0 1395 176 16 0 chr12 477494 477739 -143804750 + AluJo SINE Alu 49 297 -15 314 299 174 52 chr12 477834 477982 -143804507 - L2 LINE L2 -1037 2277 2148 2417 49 3 3 chr12 477982 478286 -143804203 - AluY SINE Alu -7 304 1 314 299 174 52 chr12 478286 478562 -143803927 - L2 LINE L2 -1166 2148 1801 201 237 43 32 chr12 478783 478876 -143803613 - L2 LINE L2 -1904 1410 1317 1840 148 3 3 chr12 479648 479945 -143802544 + AluJo SINE Alu 6 302 -10 390 176 22 22 chr12 480116 480207 -143802282 - L1MD1 LINE L1 -13 6229 6139 762 209 0 0 chr12 480861 480995 -143801494 - AluJo SINE Alu -178 134 1 666 215 15 0 chr12 481779 481909 -143800580 - AluJb SINE Alu -25 287 156 1066 146 158 62 chr12 481956 482095 -143800394 + AluJo SINE Alu 5 129 -183 2088 117 23 0 chr12 482095 482395 -143800094 + AluSx SINE Alu 1 307 -5 1066 146 158 62 chr12 482395 482495 -143799994 + AluJo SINE Alu 129 267 -45 706 97 167 0 chr12 482746 482860 -143799629 - AluJo SINE Alu -178 134 2 2275 48 44 0 chr12 484043 484338 -143798151 - AluY SINE Alu -2 309 2 411 313 55 46 chr12 486056 486273 -143796216 + MIR SINE MIR 20 238 -24 328 278 0 72 chr12 486339 486436 -143796053 + L1MC4 LINE L1 6613 6702 -1340 893 147 102 6 chr12 488544 488701 -143793788 - FRAM SINE Alu -5 171 1 189 268 110 24 chr12 488989 489071 -143793418 + MIR SINE MIR 76 164 -98 982 163 0 0 chr12 489095 489261 -143793228 - AluJb SINE Alu -17 295 130 255 31 0 0 chr12 489846 489878 -143792611 + (CGGGGG)n Simple_repeat Simple_repeat 3 34 0 203 128 51 0 chr12 489923 489962 -143792527 + (CGGG)n Simple_repeat Simple_repeat 2 42 0 47 92 0 0 chr12 490218 490349 -143792140 + GC_rich Low_complexity Low_complexity 1 131 0 21 36 0 0 chr12 490512 490540 -143791949 + GC_rich Low_complexity Low_complexity 1 28 0 213 207 32 36 chr12 491252 491314 -143791175 + MIR SINE MIR 90 150 -58 261 248 191 0 chr12 491783 491888 -143790601 + MIR3 SINE MIR 62 186 -22 251 305 23 62 chr12 491918 492095 -143790394 - L3 LINE CR1 -127 1450 1281 348 331 102 80 chr12 493389 493812 -143788677 - L2 LINE L2 -3 3269 2838 2010 102 10 14 chr12 494289 494584 -143787905 + AluSx SINE Alu 1 294 -18 187 154 39 96 chr12 495234 495286 -143787203 + L2 LINE L2 3262 3310 -3 22 35 0 0 chr12 496690 496719 -143785770 + AT_rich Low_complexity Low_complexity 1 29 0 388 202 0 36 chr12 496836 496920 -143785569 - L1ME3A LINE L1 -61 6109 6029 266 208 0 14 chr12 496952 497024 -143785465 - L1ME3A LINE L1 -200 5964 5894 21 0 0 0 chr12 497033 497054 -143785435 + AT_rich Low_complexity Low_complexity 1 21 0 542 161 11 0 chr12 497061 497148 -143785341 - FRAM SINE Alu -24 152 65 2005 131 7 0 chr12 497218 497523 -143784966 + AluSx SINE Alu 1 307 -5 337 347 127 14 chr12 499091 499304 -143783185 + MIR SINE MIR 20 256 -6 23 0 0 0 chr12 499743 499766 -143782723 + AT_rich Low_complexity Low_complexity 1 23 0 929 126 0 0 chr12 499766 499893 -143782596 - FLAM_C SINE Alu -6 127 1 1946 97 37 0 chr12 500677 500968 -143781521 - AluSx SINE Alu 0 303 3 1863 126 7 0 chr12 501048 501366 -143781123 + AluSg SINE Alu 1 320 0 2052 122 0 0 chr12 501366 501652 -143780837 + AluSx SINE Alu 1 286 -26 220 0 86 0 chr12 501656 501691 -143780798 + (TAAA)n Simple_repeat Simple_repeat 3 40 0 28 48 0 0 chr12 501708 501750 -143780739 + AT_rich Low_complexity Low_complexity 1 42 0 383 271 45 8 chr12 501784 501917 -143780572 - L1MEd LINE L1 -5932 187 50 1327 206 3 47 chr12 502227 502388 -143780101 - AluJo SINE Alu -17 295 151 2195 59 38 0 chr12 502388 502678 -143779811 - AluY SINE Alu -10 301 1 1327 206 3 47 chr12 502678 502817 -143779672 - AluJo SINE Alu -161 151 8 1569 174 43 0 chr12 502918 503199 -143779290 - AluJo SINE Alu -9 303 11 541 245 55 70 chr12 503633 503833 -143778656 - L2 LINE L2 -3 3310 3114 1913 151 3 19 chr12 504479 504619 -143777870 + AluJo SINE Alu 1 142 -170 1744 141 41 0 chr12 504619 504909 -143777580 + AluJb SINE Alu 1 302 -10 1913 151 3 19 chr12 504909 505085 -143777404 + AluJo SINE Alu 142 312 0 921 229 62 33 chr12 505996 506240 -143776249 + MIR SINE MIR 6 256 -6 1478 152 0 84 chr12 506243 506565 -143775924 + AluJo SINE Alu 1 295 -17 500 281 20 7 chr12 506828 506981 -143775508 - MER117 DNA MER1_type -35 162 8 229 282 0 71 chr12 506957 507042 -143775447 - MIR3 SINE MIR -37 171 93 * 1860 174 0 10 chr12 507910 508214 -143774275 + AluJo SINE Alu 5 305 -7 716 187 8 22 chr12 509150 509284 -143773205 - FLAM_A SINE Alu 0 133 2 243 296 0 61 chr12 509508 509623 -143772866 - L2 LINE L2 -1313 2001 1894 2565 43 0 7 chr12 509854 510156 -143772333 - AluY SINE Alu -11 300 1 398 287 34 40 chr12 510222 510406 -143772083 + MIR3 SINE MIR 8 191 -17 481 217 104 0 chr12 512291 512406 -143770083 - MIR3 SINE MIR -9 199 73 927 218 0 0 chr12 512656 512826 -143769663 + FAM SINE Alu 1 170 -5 1791 193 0 7 chr12 512839 513139 -143769350 - AluJb SINE Alu -2 310 13 1887 157 0 4 chr12 513356 513637 -143768852 + AluJb SINE Alu 1 280 -32 340 318 121 8 chr12 513654 513786 -143768703 - MIR SINE MIR -40 222 76 376 198 128 116 chr12 514369 514541 -143767948 + MER5B DNA MER1_type 1 174 -4 22 0 0 0 chr12 514734 514756 -143767733 + AT_rich Low_complexity Low_complexity 1 22 0 281 210 32 16 chr12 515533 515595 -143766894 - MER5B DNA MER1_type 0 178 116 230 317 12 0 chr12 515596 515678 -143766811 + L1ME2 LINE L1 6072 6154 -10 6645 169 67 7 chr12 515704 516144 -143766345 + L1MCa LINE L1 30 442 -5984 2292 115 3 0 chr12 516144 516448 -143766041 - AluSg SINE Alu -5 305 1 6645 169 67 7 chr12 516448 517373 -143765116 + L1MCa LINE L1 442 1477 -4949 2388 119 0 0 chr12 517373 517683 -143764806 + AluSx SINE Alu 2 311 -1 1226 164 37 23 chr12 517694 517908 -143764581 + AluJb SINE Alu 82 298 -14 322 111 99 49 chr12 517911 517992 -143764497 + L1MCa LINE L1 1471 1555 -4871 232 162 0 0 chr12 518008 518045 -143764444 + Alu SINE Alu 11 47 -255 2436 111 95 16 chr12 518045 518546 -143763943 + L1MCa LINE L1 1560 2179 -4247 1097 184 17 63 chr12 518550 518789 -143763700 + AluJo SINE Alu 85 312 0 9995 210 49 17 chr12 518805 518907 -143763582 + L1MCa LINE L1 2197 2294 -4319 2821 58 29 16 chr12 518907 519283 -143763206 + L1PA8 LINE L1 5791 6171 -1 9995 210 49 17 chr12 519283 520396 -143762093 + L1MCa LINE L1 2294 3370 -3243 1844 149 35 3 chr12 520396 520684 -143761805 + AluJb SINE Alu 1 297 -15 9995 210 49 17 chr12 520684 521273 -143761216 + L1MCa LINE L1 3370 3938 -2675 2070 152 10 0 chr12 521273 521570 -143760919 - AluJb SINE Alu -12 300 1 9995 210 49 17 chr12 521570 521715 -143760774 + L1MCa LINE L1 3938 4077 -2536 2224 113 7 13 chr12 521715 522024 -143760465 + AluSg SINE Alu 1 307 -3 9995 210 49 17 chr12 522024 523480 -143759009 + L1MCa LINE L1 4077 5894 -719 2248 103 0 57 chr12 523929 524260 -143758229 + AluJb SINE Alu 1 312 0 574 290 122 9 chr12 524975 525196 -143757293 - MIR SINE MIR -3 259 14 431 292 260 0 chr12 525504 525658 -143756831 + MER91A DNA MER1_type 3 196 0 2439 139 107 61 chr12 526218 526267 -143756222 - L1MB5 LINE L1 -6 6168 6123 2226 109 3 0 chr12 526267 526560 -143755929 + AluSx SINE Alu 9 302 -10 2439 139 107 61 chr12 526560 526820 -143755669 - L1MB5 LINE L1 -51 6123 5877 1261 165 169 0 chr12 526820 527075 -143755414 - AluJo SINE Alu -3 299 2 2387 62 36 7 chr12 527080 527384 -143755105 - AluSp SINE Alu 0 313 1 2439 139 107 61 chr12 527384 527626 -143754863 - L1MB5 LINE L1 -300 5874 5584 300 234 13 65 chr12 529623 529700 -143752789 + L2 LINE L2 3241 3313 0 404 243 88 7 chr12 529721 529869 -143752620 - Charlie8 DNA MER1_type -2213 204 45 980 141 18 41 chr12 530076 530246 -143752243 - FRAM SINE Alu 0 166 1 2149 109 0 23 chr12 530807 531110 -143751379 - AluSx SINE Alu -10 302 7 1291 126 0 0 chr12 531372 531546 -143750943 + FRAM SINE Alu 1 170 -6 238 285 115 55 chr12 531609 531774 -143750715 + MER5B DNA MER1_type 1 175 -3 * 402 236 61 88 chr12 531630 531778 -143750711 - MER5A DNA MER1_type -32 157 14 1892 153 7 19 chr12 532689 532996 -143749493 - AluJo SINE Alu -5 307 5 212 296 0 0 chr12 533396 533450 -143749039 + MIR SINE MIR 91 144 -64 204 186 103 72 chr12 533667 533764 -143748725 + L2 LINE L2 1902 2001 -1313 2258 117 0 0 chr12 533774 534072 -143748417 + AluSx SINE Alu 1 298 -14 859 126 16 0 chr12 534116 534243 -143748246 + AluJb SINE Alu 177 305 -7 1022 173 6 0 chr12 534410 534572 -143747917 - AluSg/x SINE Alu -21 289 127 560 167 20 10 chr12 534572 534674 -143747815 + AluJo/FRAM SINE Alu 203 305 -7 2284 88 7 10 chr12 534836 535133 -143747356 - AluSq SINE Alu -17 296 1 441 272 190 6 chr12 536159 536317 -143746172 - MIR3 SINE MIR -2 206 20 2674 52 0 0 chr12 536568 536877 -143745612 - AluY SINE Alu -2 309 1 894 211 52 9 chr12 536884 537116 -143745373 - L1MC3 LINE L1 0 7785 7544 1351 183 0 45 chr12 538218 538464 -143744025 - AluJo SINE Alu -18 294 60 875 169 33 0 chr12 540773 540956 -143741533 - L1MB7 LINE L1 -60 6124 5936 1119 136 60 0 chr12 540966 541150 -143741339 - AluJ SINE Alu 0 312 118 211 256 45 34 chr12 541315 541491 -143740998 + CT-rich Low_complexity Low_complexity 1 178 0 204 227 64 29 chr12 541641 541813 -143740676 + CT-rich Low_complexity Low_complexity 1 178 0 239 249 40 40 chr12 542217 542394 -143740095 + CT-rich Low_complexity Low_complexity 1 177 0 3028 132 17 33 chr12 542749 543271 -143739218 - MER41A LTR ERV1 -40 514 1 729 148 16 16 chr12 543294 543416 -143739073 - AluJ SINE Alu -188 124 3 1527 158 129 21 chr12 543416 543722 -143738767 - L1MB7 LINE L1 -341 5824 5486 2696 43 0 0 chr12 543722 544026 -143738463 - AluY SINE Alu -7 304 1 1527 158 129 21 chr12 544026 544070 -143738419 - L1MB7 LINE L1 -679 5486 5448 969 211 59 62 chr12 544248 544276 -143738213 + MIR SINE MIR 8 35 -227 2201 111 37 0 chr12 544276 544574 -143737915 + AluSx SINE Alu 1 309 -3 969 211 59 62 chr12 544574 544704 -143737785 + MIR SINE MIR 35 167 -95 2101 80 10 47 chr12 544704 545026 -143737463 - AluSc SINE Alu 0 309 1 969 211 59 62 chr12 545026 545122 -143737367 + MIR SINE MIR 167 262 0 288 282 59 0 chr12 545166 545251 -143737238 - MIR SINE MIR -70 192 103 1113 239 104 51 chr12 545339 545385 -143737104 - L2 LINE L2 -54 3259 3217 2489 59 0 29 chr12 545385 545692 -143736797 + AluY SINE Alu 1 298 -13 1113 239 104 51 chr12 545692 546059 -143736430 - L2 LINE L2 -96 3217 2824 452 273 18 0 chr12 546079 546189 -143736300 + MER94 DNA DNA 3 114 -20 1579 252 159 42 chr12 546193 546867 -143735622 - L2 LINE L2 -513 2801 2049 501 281 96 11 chr12 547446 547624 -143734865 + MIR SINE MIR 12 204 -58 357 302 40 13 chr12 547662 547794 -143734695 - MIR SINE MIR -74 134 7 1084 167 81 102 chr12 547818 547952 -143734537 + MER2 DNA MER2_type 1 136 -209 1579 152 54 11 chr12 547952 548229 -143734260 - AluJo SINE Alu -23 289 1 1084 167 81 102 chr12 548229 548429 -143734060 + MER2 DNA MER2_type 136 328 -17 879 58 0 0 chr12 550219 550323 -143732166 + AluSg/x SINE Alu 180 283 -27 267 293 49 0 chr12 551261 551343 -143731146 - MER5C DNA MER1_type -201 123 38 2672 149 33 33 chr12 551700 552182 -143730307 + L1MB3 LINE L1 5650 6134 -49 1850 128 13 39 chr12 552182 552494 -143729995 + AluJb SINE Alu 1 304 -8 2672 149 33 33 chr12 552494 552533 -143729956 + L1MB3 LINE L1 6133 6171 -12 315 298 26 67 chr12 553083 553239 -143729250 + MIR SINE MIR 2 150 -65 2228 107 3 3 chr12 553310 553609 -143728880 + AluSg SINE Alu 1 299 -11 228 111 0 0 chr12 554169 554205 -143728284 + (A)n Simple_repeat Simple_repeat 1 36 0 600 254 57 43 chr12 554206 554415 -143728074 + MIR SINE MIR 50 261 -1 2317 91 0 0 chr12 554616 554938 -143727551 - AluSx SINE Alu 0 322 1 222 227 15 76 chr12 555714 555780 -143726709 + L2 LINE L2 3201 3262 -10 207 0 0 0 chr12 556198 556221 -143726268 + (TTTG)n Simple_repeat Simple_repeat 4 26 0 186 43 0 0 chr12 556222 556245 -143726244 + (ATG)n Simple_repeat Simple_repeat 2 24 0 1524 179 100 0 chr12 556450 556610 -143725879 - AluJb SINE Alu -4 308 165 219 36 0 0 chr12 556610 556638 -143725851 + (TTTTG)n Simple_repeat Simple_repeat 3 30 0 1524 179 100 0 chr12 556638 556757 -143725732 - AluJb SINE Alu -147 165 1 327 250 25 0 chr12 557644 557724 -143724765 + MIR SINE MIR 47 128 -134 22 0 0 0 chr12 557733 557755 -143724734 + AT_rich Low_complexity Low_complexity 1 22 0 1067 150 6 39 chr12 557739 557919 -143724570 - FAM SINE Alu -1 174 1 243 305 0 0 chr12 559169 559228 -143723261 + MIR SINE MIR 203 261 -1 411 299 71 0 chr12 560145 560272 -143722217 + MIR SINE MIR 81 216 -46 217 321 0 0 chr12 560712 560765 -143721724 + L2 LINE L2 3207 3259 -13 1577 187 47 17 chr12 560896 561195 -143721294 + AluJo SINE Alu 1 308 -4 414 288 153 6 chr12 561306 561469 -143721020 - MIR SINE MIR -10 252 66 751 145 0 83 chr12 561490 561635 -143720854 - FLAM_C SINE Alu 0 133 1 1762 211 106 12 chr12 561901 562327 -143720162 - MER31B LTR ERV1 0 466 1 223 269 137 58 chr12 563100 563290 -143719199 + MIR SINE MIR 14 214 -37 451 326 62 26 chr12 563624 563817 -143718672 + MIR3 SINE MIR 2 201 -7 28 0 0 0 chr12 566004 566032 -143716457 + AT_rich Low_complexity Low_complexity 1 28 0 791 197 0 0 chr12 566043 566175 -143716314 - FLAM_A SINE Alu 0 133 2 327 333 180 0 chr12 566245 566395 -143716094 - MIR SINE MIR -3 259 83 433 229 93 7 chr12 566483 566623 -143715866 - MER103 DNA DNA -3 163 12 1402 181 120 18 chr12 566810 567086 -143715403 - AluJo SINE Alu -8 304 1 191 345 0 8 chr12 567090 567183 -143715306 - MIR SINE MIR -63 145 57 21 0 0 0 chr12 567696 567717 -143714772 + AT_rich Low_complexity Low_complexity 1 21 0 1893 151 0 13 chr12 567804 568115 -143714374 + AluJb SINE Alu 1 307 -5 237 278 56 95 chr12 568225 568351 -143714138 - MIR3 SINE MIR -39 169 49 186 213 307 0 chr12 568478 568553 -143713936 - MIR SINE MIR -102 160 63 379 68 0 123 chr12 569087 569160 -143713329 - L1MB8 LINE L1 -6 6172 6109 1607 188 7 0 chr12 569160 569436 -143713053 + AluJo SINE Alu 1 278 -34 189 0 0 0 chr12 569442 569463 -143713026 + (TAAAA)n Simple_repeat Simple_repeat 2 22 0 518 331 69 23 chr12 569934 570261 -143712228 - L2 LINE L2 -181 3091 2727 2504 65 0 0 chr12 570261 570571 -143711918 - AluY SINE Alu 0 311 2 518 331 69 23 chr12 570571 570706 -143711783 - L2 LINE L2 -545 2727 2600 417 269 19 0 chr12 570777 570885 -143711604 + MIR3 SINE MIR 77 186 -22 213 108 0 0 chr12 571361 571398 -143711091 + (CACCC)n Simple_repeat Simple_repeat 3 39 0 619 209 9 0 chr12 573985 574100 -143708389 + MER91A DNA MER1_type 1 116 -80 255 245 21 21 chr12 574961 575055 -143707434 + G-rich Low_complexity Low_complexity 1 94 0 322 144 0 89 chr12 575056 575236 -143707253 + (GGAGA)n Simple_repeat Simple_repeat 4 167 0 185 155 0 99 chr12 575239 575381 -143707108 + GA-rich Low_complexity Low_complexity 4 131 0 420 301 11 19 chr12 575415 575633 -143706856 + G-rich Low_complexity Low_complexity 1 216 0 245 331 18 31 chr12 575792 575955 -143706534 + CT-rich Low_complexity Low_complexity 1 161 0 545 233 41 7 chr12 576175 576321 -143706168 - MIR3 SINE MIR -38 170 20 1227 219 35 13 chr12 576502 576812 -143705677 + L1MA4A LINE L1 5985 6301 -2 297 306 306 0 chr12 576895 577065 -143705424 + MIR SINE MIR 9 230 -32 * 338 298 173 42 chr12 577029 577220 -143705269 - MIR SINE MIR -12 250 35 1875 129 43 20 chr12 577947 578250 -143704239 + AluJo SINE Alu 1 310 -2 195 200 25 0 chr12 578261 578301 -143704188 - MIR3 SINE MIR -52 156 116 713 328 9 4 chr12 578546 578775 -143703714 + MIR SINE MIR 23 252 -10 307 351 26 9 chr12 578777 578891 -143703598 + MER91B DNA MER1_type 75 190 0 1005 191 0 0 chr12 579660 579838 -143702651 + AluJb SINE Alu 135 312 0 396 0 0 0 chr12 581612 581656 -143700833 + (CA)n Simple_repeat Simple_repeat 2 45 0 613 195 88 13 chr12 582266 582425 -143700064 - MIR SINE MIR -66 196 26 231 167 0 0 chr12 583051 583093 -143699396 + GA-rich Low_complexity Low_complexity 1 42 0 2932 182 30 79 chr12 583748 583828 -143698661 - L1MB7 LINE L1 -16 6168 6086 2737 23 0 0 chr12 583828 584137 -143698352 + AluY SINE Alu 1 309 -2 2932 182 30 79 chr12 584137 584215 -143698274 - L1MB7 LINE L1 -98 6086 6006 2216 128 0 0 chr12 584215 584527 -143697962 + AluSx SINE Alu 1 312 0 2932 182 30 79 chr12 584527 585092 -143697397 - L1MB7 LINE L1 -178 6006 5492 2397 84 3 0 chr12 585092 585401 -143697088 - AluY SINE Alu 0 311 2 2932 182 30 79 chr12 585401 585559 -143696930 - L1MB7 LINE L1 -692 5492 5328 489 329 0 13 chr12 585622 585780 -143696709 - MIR3 SINE MIR -14 194 39 315 315 113 13 chr12 586232 586413 -143696076 - MIR SINE MIR -41 221 19 344 280 192 0 chr12 588211 588336 -143694153 - L2 LINE L2 -1 3271 3123 189 289 78 56 chr12 588885 588975 -143693514 + MIR SINE MIR 96 187 -75 426 269 47 23 chr12 589679 589839 -143692650 - MIR SINE MIR -56 206 41 272 290 187 0 chr12 590427 590534 -143691955 - MIR SINE MIR -108 154 28 182 370 40 0 chr12 592943 593043 -143689446 - L2 LINE L2 -30 3242 3139 359 234 0 26 chr12 594119 594196 -143688293 - MER5A DNA MER1_type -99 90 16 242 285 153 7 chr12 595558 595695 -143686794 + MIR3 SINE MIR 34 190 -18 296 311 10 19 chr12 595912 596015 -143686474 - MER91A DNA MER1_type -29 167 66 339 157 0 0 chr12 596794 596864 -143685625 + (TGGA)n Simple_repeat Simple_repeat 4 73 0 190 103 0 0 chr12 596914 596943 -143685546 + MIR SINE MIR 96 124 -84 2030 134 3 10 chr12 597043 597348 -143685141 + AluSx SINE Alu 1 303 -9 399 251 36 36 chr12 597358 597553 -143684936 - Charlie7 DNA MER1_type 0 2612 2418 23 0 0 0 chr12 598196 598219 -143684270 + GC_rich Low_complexity Low_complexity 1 23 0 185 341 73 49 chr12 599582 599705 -143682784 + L3b LINE CR1 1439 1564 -19 594 301 30 0 chr12 601961 602127 -143680362 - MIR SINE MIR -12 250 80 1318 92 0 0 chr12 602170 602343 -143680146 - AluSq SINE Alu -7 306 134 2304 82 0 3 chr12 602343 602646 -143679843 - AluSx SINE Alu -10 302 1 1024 171 0 17 chr12 602747 602928 -143679561 + AluSg/x SINE Alu 135 312 0 1978 94 45 3 chr12 603271 603559 -143678930 + AluSq SINE Alu 1 300 -13 562 103 26 0 chr12 603571 603672 -143678817 + AluSg/x SINE Alu 209 311 0 2013 212 23 13 chr12 603699 604091 -143678398 + MSTD LTR MaLR 1 396 0 828 214 12 0 chr12 605803 605976 -143676513 - AluJo SINE Alu -1 311 137 1668 150 17 0 chr12 606425 606725 -143675764 + MER47A DNA MER2_type 58 362 -4 234 62 0 0 chr12 606736 606768 -143675721 + (TA)n Simple_repeat Simple_repeat 2 33 0 634 99 0 0 chr12 606770 606851 -143675638 - AluSg/x SINE Alu -69 243 163 319 281 174 0 chr12 606852 606971 -143675518 - MIR SINE MIR -114 148 9 356 224 0 0 chr12 606971 607038 -143675451 + MER5A DNA MER1_type 1 67 -122 862 141 7 7 chr12 607041 607176 -143675313 - AluJo SINE Alu -177 135 1 22 0 0 0 chr12 607188 607210 -143675279 + AT_rich Low_complexity Low_complexity 1 22 0 1537 191 113 33 chr12 607252 607677 -143674812 + LTR2B LTR ERV1 32 490 0 1543 162 19 15 chr12 607678 607937 -143674552 - AluJo SINE Alu -52 260 1 251 303 53 0 chr12 607938 608014 -143674475 - MIR SINE MIR -171 91 12 1037 216 119 113 chr12 608725 608802 -143673687 + MER4C LTR ERV1 1 76 -389 352 0 20 20 chr12 608802 608851 -143673638 + (CAAAA)n Simple_repeat Simple_repeat 5 53 0 1037 216 119 113 chr12 608851 609235 -143673254 + MER4C LTR ERV1 76 465 0 189 74 0 0 chr12 609588 609615 -143672874 + (TGAA)n Simple_repeat Simple_repeat 1 27 0 2164 118 3 0 chr12 609631 609919 -143672570 + AluSx SINE Alu 7 295 -17 768 178 0 0 chr12 610118 610298 -143672191 + (TG)n Simple_repeat Simple_repeat 1 180 0 738 167 0 0 chr12 610351 610531 -143671958 + (TG)n Simple_repeat Simple_repeat 1 180 0 304 220 89 48 chr12 611337 611490 -143670999 - MIR SINE MIR -59 149 1 207 271 136 0 chr12 611509 611568 -143670921 + L2 LINE L2 3206 3272 0 385 296 0 0 chr12 611570 611746 -143670743 + (CATG)n Simple_repeat Simple_repeat 2 177 0 358 299 0 0 chr12 611809 611986 -143670503 + (CATG)n Simple_repeat Simple_repeat 4 180 0 * 401 301 0 0 chr12 611948 612177 -143670312 + (TGAA)n Simple_repeat Simple_repeat 1 229 0 303 322 0 0 chr12 612220 612397 -143670092 + (TGAA)n Simple_repeat Simple_repeat 2 178 0 * 391 299 0 0 chr12 612280 612457 -143670032 + (CATG)n Simple_repeat Simple_repeat 4 180 0 251 233 192 17 chr12 612963 613083 -143669406 + MIR SINE MIR 18 158 -104 234 270 95 7 chr12 613115 613252 -143669237 + L1ME4a LINE L1 5946 6094 -27 1085 181 42 23 chr12 613457 613673 -143668816 + AluJo SINE Alu 1 220 -92 328 100 0 0 chr12 613673 613723 -143668766 + AluSq/x SINE Alu 86 135 -168 2175 122 3 0 chr12 613723 614026 -143668463 + AluSx SINE Alu 1 304 -8 2023 93 41 7 chr12 614052 614342 -143668147 + AluSg SINE Alu 5 304 -6 250 53 0 126 chr12 614674 614769 -143667720 + (GGGAA)n Simple_repeat Simple_repeat 2 84 0 184 214 0 24 chr12 614899 614941 -143667548 - L2 LINE L2 -1 3312 3272 275 146 21 0 chr12 615239 615287 -143667202 - MER45 DNA AcHobo -14 1567 1519 375 219 0 0 chr12 615331 615413 -143667076 - MER45 DNA AcHobo -918 122 41 324 289 79 9 chr12 615836 615950 -143666539 - MIR3 SINE MIR -53 155 34 183 275 242 17 chr12 617012 617132 -143665357 + L2 LINE L2 3036 3182 -90 209 117 96 0 chr12 617353 617447 -143665042 + GA-rich Low_complexity Low_complexity 2 104 0 555 295 161 9 chr12 617621 617838 -143664651 - MIR SINE MIR 0 262 13 463 266 47 107 chr12 618035 618399 -143664090 + L1MC4a LINE L1 5463 5804 -317 305 249 102 51 chr12 618446 618643 -143663846 + L1MC4a LINE L1 5789 5995 -1813 336 127 18 0 chr12 618734 618789 -143663700 - U7 snRNA snRNA -7 56 1 264 305 78 31 chr12 618899 619027 -143663462 - L2 LINE L2 -1 3271 3138 582 131 9 47 chr12 619303 619410 -143663079 - AluJo SINE Alu -178 134 32 506 300 105 5 chr12 621274 621464 -143661025 + MIR SINE MIR 16 224 -38 2255 97 3 10 chr12 621618 621916 -143660573 + AluSq SINE Alu 1 296 -17 343 321 93 50 chr12 621996 622339 -143660150 + L1MC1 LINE L1 3014 3371 -2775 1813 126 16 0 chr12 622663 622918 -143659571 + AluJb SINE Alu 29 287 -25 435 155 0 0 chr12 622918 623002 -143659487 + GA-rich Low_complexity Low_complexity 1 84 0 204 40 0 0 chr12 623020 623045 -143659444 + (CAG)n Simple_repeat Simple_repeat 2 26 0 4645 190 26 68 chr12 623124 623556 -143658933 + L1MC1 LINE L1 3973 4422 -1911 304 50 0 100 chr12 623556 623616 -143658873 + L1MA4A LINE L1 6244 6297 -6 4645 190 26 68 chr12 623616 623705 -143658784 + L1MC1 LINE L1 4422 4513 -1820 741 176 0 63 chr12 623705 623847 -143658642 + FLAM_C SINE Alu 1 133 0 4645 190 26 68 chr12 623847 624692 -143657797 + L1MC1 LINE L1 4513 5236 -1097 2035 98 79 0 chr12 624692 624969 -143657520 + AluSp SINE Alu 1 299 -14 4645 190 26 68 chr12 624969 625461 -143657028 + L1MC1 LINE L1 5236 5747 -586 1504 189 17 26 chr12 625461 625759 -143656730 + L1MC1 LINE L1 6035 6333 0 1999 142 7 7 chr12 625840 626142 -143656347 + AluJb SINE Alu 1 302 -10 732 265 33 0 chr12 626406 626587 -143655902 + MIR SINE MIR 76 262 0 365 205 71 54 chr12 627812 627908 -143654581 + L1ME4a LINE L1 5986 6086 -35 2067 131 3 0 chr12 627908 628198 -143654291 - AluJb SINE Alu -21 291 1 365 205 71 54 chr12 628198 628213 -143654276 + L1ME4a LINE L1 6086 6099 -22 1982 107 43 7 chr12 628298 628578 -143653911 + AluSq SINE Alu 1 290 -23 312 292 111 21 chr12 628742 628886 -143653603 - MIR SINE MIR -76 186 30 2053 115 10 13 chr12 629470 629775 -143652714 + AluSx SINE Alu 1 304 -8 414 0 0 0 chr12 629852 629898 -143652591 + (TG)n Simple_repeat Simple_repeat 2 47 0 829 181 18 41 chr12 629898 630058 -143652431 - AluJb SINE Alu -29 283 126 32 43 0 0 chr12 630415 630461 -143652028 + AT_rich Low_complexity Low_complexity 1 46 0 2467 61 3 10 chr12 630463 630774 -143651715 + AluY SINE Alu 1 309 -2 2127 112 0 44 chr12 630779 631100 -143651389 + AluSx SINE Alu 1 307 -5 4023 171 105 20 chr12 631350 632027 -143650462 - L1MB8 LINE L1 -15 6163 5545 1787 179 3 16 chr12 632027 632334 -143650155 - AluJo SINE Alu -9 303 1 4023 171 105 20 chr12 632334 632856 -143649633 - L1MB8 LINE L1 -633 5545 5069 2249 133 0 0 chr12 632856 633158 -143649331 - AluSx SINE Alu -10 302 1 4023 171 105 20 chr12 633158 633439 -143649050 - L1MB8 LINE L1 -1109 5069 4542 2459 75 0 0 chr12 633553 633860 -143648629 + AluSx SINE Alu 1 307 -5 292 287 49 25 chr12 633973 634095 -143648394 + HAL1 LINE L1 338 462 -2045 403 276 60 0 chr12 634095 634211 -143648278 + MER5C DNA MER1_type 1 123 -201 182 231 0 0 chr12 634372 634411 -143648078 + MER5C DNA MER1_type 286 324 0 234 306 47 0 chr12 634467 634552 -143647937 + HAL1 LINE L1 549 637 -1870 978 120 56 0 chr12 634624 634766 -143647723 + FRAM SINE Alu 14 163 -13 226 298 0 50 chr12 634781 634902 -143647587 + HAL1 LINE L1 684 798 -1709 349 222 228 26 chr12 635032 635221 -143647268 + HAL1 LINE L1 795 1021 -1486 32 26 0 0 chr12 635227 635266 -143647223 + AT_rich Low_complexity Low_complexity 1 39 0 687 121 0 0 chr12 635269 635368 -143647121 - AluJ/FLAM SINE Alu -212 100 2 1089 271 155 25 chr12 635382 636009 -143646480 + HAL1 LINE L1 1032 1739 -768 237 239 15 0 chr12 636243 636310 -143646179 + MLT1K LTR MaLR 511 578 -10 213 194 311 19 chr12 636324 636427 -143646062 - MER5A DNA MER1_type -13 176 44 * 422 258 200 0 chr12 636339 636459 -143646030 + MER5A DNA MER1_type 46 189 0 267 31 0 0 chr12 636549 636581 -143645908 + (ATG)n Simple_repeat Simple_repeat 3 34 0 1068 228 57 24 chr12 637559 637805 -143644684 - MIR SINE MIR 0 262 9 341 233 105 12 chr12 638057 638143 -143644346 + MIR3 SINE MIR 74 167 -41 2608 58 0 7 chr12 638687 638997 -143643492 + AluY SINE Alu 3 310 -1 1041 99 0 21 chr12 639019 639161 -143643328 + AluJb SINE Alu 163 301 -11 183 284 119 64 chr12 639169 639278 -143643211 - MIR3 SINE MIR -93 115 1 2441 92 0 3 chr12 639924 640227 -143642262 - AluSq SINE Alu -6 307 6 2004 138 33 13 chr12 640359 640833 -143641656 - AluSx SINE Alu 0 312 1 206 269 0 19 chr12 640858 640910 -143641579 - MIR3 SINE MIR -23 185 135 1079 262 120 18 chr12 641053 641495 -143640994 + MLT1J LTR MaLR 18 504 -7 231 259 259 19 chr12 642168 642330 -143640159 - MIR3 SINE MIR -3 205 5 2146 132 0 3 chr12 642523 642819 -143639670 + AluSx SINE Alu 1 295 -17 2589 64 0 6 chr12 642821 643134 -143639355 + AluY SINE Alu 1 311 0 191 244 56 78 chr12 643228 643318 -143639171 - MIR SINE MIR -102 160 73 2261 92 3 3 chr12 644516 644800 -143637689 + AluSp SINE Alu 13 296 -17 2406 75 7 0 chr12 646121 646413 -143636076 + AluSx SINE Alu 1 294 -18 351 254 6 51 chr12 647410 647587 -143634902 + G-rich Low_complexity Low_complexity 2 170 0 331 327 19 9 chr12 647655 647762 -143634727 - MIR3 SINE MIR -6 202 95 594 235 95 34 chr12 648976 649155 -143633334 + MIR SINE MIR 3 192 -70 210 339 0 0 chr12 649475 649531 -143632958 + MIR3 SINE MIR 104 159 -49 2249 106 0 0 chr12 649815 650127 -143632362 - AluSx SINE Alu 0 312 1 1983 162 6 19 chr12 650365 650730 -143631759 + AluJo SINE Alu 3 363 0 2337 105 7 0 chr12 650738 651043 -143631446 + AluSc SINE Alu 3 309 0 2044 122 31 0 chr12 651049 651337 -143631152 + AluSg1 SINE Alu 1 297 -12 2418 67 40 3 chr12 651337 651637 -143630852 + AluY SINE Alu 1 311 0 25 0 0 0 chr12 651979 652004 -143630485 + AT_rich Low_complexity Low_complexity 1 25 0 2167 140 0 6 chr12 652949 653263 -143629226 + AluJo SINE Alu 1 312 0 202 281 0 31 chr12 653648 653712 -143628777 - L2 LINE L2 -100 3213 3152 2312 98 3 3 chr12 653724 654021 -143628468 + AluSx SINE Alu 1 297 -15 2245 99 24 0 chr12 654024 654318 -143628171 + AluSq SINE Alu 1 301 -12 356 326 96 53 chr12 654370 654783 -143627706 - L2 LINE L2 -237 3035 2608 767 223 55 103 chr12 655812 656006 -143626483 + MIR SINE MIR 3 182 -80 1743 193 3 0 chr12 656006 656291 -143626198 + AluJo SINE Alu 6 291 -21 767 223 55 103 chr12 656291 656369 -143626120 + MIR SINE MIR 182 262 0 226 255 32 43 chr12 656654 656748 -143625741 - L2 LINE L2 -211 3061 2969 1023 133 60 0 chr12 656996 657147 -143625342 + AluSg/x SINE Alu 136 295 -15 4014 141 14 14 chr12 657739 658372 -143624117 + MER41B LTR ERV1 1 633 -2 741 187 21 67 chr12 658386 658578 -143623911 - MIR SINE MIR -62 146 8 1279 129 58 45 chr12 658702 658806 -143623683 - MER30 DNA MER1_type 0 230 129 2308 89 24 0 chr12 658806 659097 -143623392 + AluSp SINE Alu 1 298 -15 234 0 0 0 chr12 659097 659123 -143623366 + (TA)n Simple_repeat Simple_repeat 2 27 0 1279 129 58 45 chr12 659123 659241 -143623248 - MER30 DNA MER1_type -100 130 4 2214 102 3 10 chr12 659535 659562 -143622927 - AluSx SINE Alu 0 312 286 262 0 0 0 chr12 659562 659591 -143622898 + (TTTTG)n Simple_repeat Simple_repeat 2 125 0 2214 102 3 10 chr12 659591 659877 -143622612 - AluSx SINE Alu -26 286 1 2333 61 3 10 chr12 660544 660861 -143621628 - AluSc SINE Alu 0 309 1 208 263 23 128 chr12 661611 661744 -143620745 + L2 LINE L2 139 257 -3057 2078 122 7 7 chr12 662416 662711 -143619778 + AluSx SINE Alu 1 295 -17 2019 141 14 0 chr12 662734 663024 -143619465 + AluSx SINE Alu 1 294 -18 2175 95 44 3 chr12 663463 663759 -143618730 - AluSg SINE Alu -2 308 1 619 204 0 53 chr12 664111 664243 -143618246 - FLAM_C SINE Alu -16 127 3 2349 94 10 0 chr12 664254 664551 -143617938 - AluSq SINE Alu -13 300 1 2581 187 20 25 chr12 664580 664993 -143617496 + L1MB4 LINE L1 4789 5202 -978 2179 110 0 7 chr12 664993 665293 -143617196 + AluSx SINE Alu 1 298 -14 2372 106 3 0 chr12 665295 665641 -143616848 + AluSp SINE Alu 1 313 0 2581 187 20 25 chr12 665641 666269 -143616220 + L1MB4 LINE L1 5203 5830 -350 2369 96 0 0 chr12 666269 666560 -143615929 + AluSg SINE Alu 1 291 -19 2390 100 0 3 chr12 666560 666871 -143615618 + AluSg SINE Alu 1 310 0 2617 47 0 0 chr12 667615 667915 -143614574 - AluY SINE Alu -11 300 1 351 265 17 0 chr12 668108 668225 -143614264 + L1MC4a LINE L1 5753 5871 -1937 842 195 185 25 chr12 668472 668672 -143613817 - MIR SINE MIR -23 239 8 270 314 10 39 chr12 669452 669554 -143612935 - MIR3 SINE MIR -2 206 108 1437 156 117 12 chr12 669718 669998 -143612491 - AluSx SINE Alu 0 307 1 2438 49 0 16 chr12 670759 671063 -143611426 + AluY SINE Alu 1 299 -12 407 271 62 16 chr12 671236 671365 -143611124 + MIR SINE MIR 20 154 -108 2033 89 11 0 chr12 671458 671727 -143610762 - AluSq SINE Alu -40 273 2 266 192 29 70 chr12 672053 672225 -143610264 + (CCCG)n Simple_repeat Simple_repeat 4 168 0 250 181 157 72 chr12 672721 672804 -143609685 - MIR SINE MIR -70 192 103 180 278 150 38 chr12 673094 673227 -143609262 + L2 LINE L2 3121 3268 -45 284 236 0 0 chr12 673359 673414 -143609075 - MIR SINE MIR 0 262 208 453 194 218 8 chr12 673422 673546 -143608943 - MER5A DNA MER1_type 0 189 40 419 205 41 0 chr12 673554 673649 -143608840 - MIR SINE MIR -50 212 114 269 250 27 71 chr12 674130 674242 -143608247 - L2 LINE L2 -613 2701 2595 523 269 0 8 chr12 674413 674532 -143607957 + MIR SINE MIR 33 150 -112 282 243 96 64 chr12 674680 674853 -143607636 - MIR SINE MIR -62 146 19 726 185 147 13 chr12 676906 677063 -143605426 - MER5A DNA MER1_type -11 178 1 251 267 158 0 chr12 677087 677207 -143605282 + MIR SINE MIR 47 185 -77 2240 95 3 17 chr12 677282 677578 -143604911 - AluSq SINE Alu -21 292 1 198 268 0 0 chr12 677664 677705 -143604784 + MIR SINE MIR 107 147 -61 214 392 75 22 chr12 677945 678172 -143604317 + L2 LINE L2 2807 3045 -227 513 47 0 0 chr12 678172 678236 -143604253 + (TCTA)n Simple_repeat Simple_repeat 2 65 0 2514 72 13 0 chr12 678243 678547 -143603942 - AluSx SINE Alu -4 308 1 325 175 16 16 chr12 678690 678753 -143603736 + L1MC4 LINE L1 6641 6703 -1339 808 222 124 29 chr12 678825 679275 -143603214 - L1ME4a LINE L1 -1 6120 5628 1788 133 9 76 chr12 679281 679598 -143602891 - AluSx SINE Alu -15 297 2 1430 134 28 12 chr12 679618 679872 -143602617 + AluSg SINE Alu 1 258 -52 1965 118 61 0 chr12 680029 680309 -143602180 + AluSc SINE Alu 13 309 0 1820 158 0 17 chr12 680342 680640 -143601849 - AluJb SINE Alu -8 304 12 207 96 58 0 chr12 681563 681615 -143600874 + (TA)n Simple_repeat Simple_repeat 2 56 0 5477 184 48 50 chr12 681636 681893 -143600596 - L1MC1 LINE L1 -6 6607 6351 935 18 0 9 chr12 681893 682007 -143600482 + (CATAG)n Simple_repeat Simple_repeat 2 114 0 5477 184 48 50 chr12 682007 682349 -143600140 - L1MC1 LINE L1 -262 6351 6010 2461 89 0 19 chr12 682349 682665 -143599824 + AluSx SINE Alu 1 310 -2 5477 184 48 50 chr12 682665 683044 -143599445 - L1MC1 LINE L1 -603 6010 5632 2345 93 0 3 chr12 683044 683346 -143599143 - AluSg SINE Alu -9 301 1 5477 184 48 50 chr12 683346 683891 -143598598 - L1MC1 LINE L1 -981 5632 5088 2356 95 0 0 chr12 683891 684186 -143598303 - AluSg SINE Alu -15 295 1 5477 184 48 50 chr12 684186 684269 -143598220 - L1MC1 LINE L1 -1525 5088 5006 2213 93 0 4 chr12 684269 684571 -143597918 - AluSc SINE Alu 0 302 2 5477 184 48 50 chr12 684571 684724 -143597765 - L1MC1 LINE L1 -1607 5006 4854 2348 102 0 0 chr12 684724 685018 -143597471 - AluSx SINE Alu -12 300 7 5477 184 48 50 chr12 685018 685734 -143596755 - L1MC1 LINE L1 -1759 4854 4131 2235 120 10 0 chr12 685734 686042 -143596447 - AluSp SINE Alu -1 312 2 5477 184 48 50 chr12 686042 686112 -143596377 - L1MC1 LINE L1 -2482 4131 4062 2389 87 13 0 chr12 686112 686412 -143596077 - AluSp SINE Alu -9 304 1 1620 186 14 24 chr12 686442 686738 -143595751 - AluJo SINE Alu -19 293 1 596 217 38 11 chr12 686739 686922 -143595567 - L1MC1 LINE L1 -3947 2479 2354 8249 160 102 11 chr12 687148 688840 -143593649 + L1MCa LINE L1 7 1853 -4573 539 167 0 0 chr12 688840 688924 -143593565 + AluS SINE Alu 1 84 -229 507 186 24 8 chr12 688925 689049 -143593440 + L1MCa LINE L1 1841 1966 -4460 2504 90 3 0 chr12 689057 689369 -143593120 + AluSq SINE Alu 1 313 0 212 186 23 0 chr12 689519 689562 -143592927 + G-rich Low_complexity Low_complexity 5 48 0 205 255 0 61 chr12 689574 689672 -143592817 + C-rich Low_complexity Low_complexity 2 93 0 301 207 0 17 chr12 690169 690227 -143592262 + L1MCa LINE L1 2533 2589 -4018 1578 193 14 24 chr12 690228 690524 -143591965 + AluJo SINE Alu 1 293 -19 2265 100 13 3 chr12 690554 690854 -143591635 + AluSx SINE Alu 1 303 -9 241 244 67 25 chr12 690855 690974 -143591515 + L1M LINE L1 5301 5424 -738 1949 159 3 10 chr12 691484 691779 -143590710 - AluJo SINE Alu -19 293 1 1103 287 58 16 chr12 692245 692625 -143589864 - L2 LINE L2 0 3313 2918 225 65 0 0 chr12 692801 692832 -143589657 + (GA)n Simple_repeat Simple_repeat 2 32 0 184 179 0 0 chr12 695620 695648 -143586841 - MIR SINE MIR -28 234 207 1131 74 0 0 chr12 695648 695783 -143586706 - AluSg/x SINE Alu -18 292 158 794 177 0 0 chr12 695968 696092 -143586397 + FLAM_C SINE Alu 1 124 -9 1736 156 7 42 chr12 696098 696406 -143586083 + AluJo SINE Alu 1 297 -15 1913 154 0 35 chr12 696837 697156 -143585333 - AluJb SINE Alu -4 308 1 954 197 13 70 chr12 697157 697385 -143585104 - MER58A DNA MER1_type -9 215 1 442 285 82 13 chr12 697904 698062 -143584427 + MIR3 SINE MIR 34 202 -6 2033 115 41 7 chr12 698073 698368 -143584121 + AluSx SINE Alu 1 305 -7 398 274 8 0 chr12 698824 698941 -143583548 + MER3 DNA MER1_type 46 163 -46 957 169 12 24 chr12 698953 699119 -143583370 - FRAM SINE Alu -2 164 1 2285 111 0 13 chr12 699136 699443 -143583046 - AluSx SINE Alu -9 303 1 2377 71 3 7 chr12 699771 700066 -143582423 + AluSg SINE Alu 1 294 -16 2008 98 3 57 chr12 700480 700777 -143581712 + AluSq SINE Alu 1 281 -32 834 106 0 0 chr12 700783 700906 -143581583 + (GAAA)n Simple_repeat Simple_repeat 2 124 0 1598 187 91 59 chr12 701015 701245 -143581244 + L1MC5 LINE L1 7271 7492 -469 1498 167 33 60 chr12 701245 701380 -143581109 + AluJo SINE Alu 3 140 -172 2158 130 3 0 chr12 701380 701672 -143580817 + AluSq SINE Alu 1 293 -20 1498 167 33 60 chr12 701672 701835 -143580654 + AluJo SINE Alu 140 293 -19 1598 187 91 59 chr12 701835 702005 -143580484 + L1MC5 LINE L1 7492 7655 -306 2424 87 3 0 chr12 702005 702314 -143580175 - AluY SINE Alu -1 310 1 1598 187 91 59 chr12 702314 702537 -143579952 + L1MC5 LINE L1 7655 7915 -46 372 266 222 11 chr12 703011 703190 -143579299 - MIR SINE MIR -46 216 6 192 77 0 0 chr12 703219 703245 -143579244 + (CA)n Simple_repeat Simple_repeat 1 26 0 417 245 125 87 chr12 703308 703353 -143579136 + MIR SINE MIR 35 77 -185 279 0 0 0 chr12 703353 703384 -143579105 + (TG)n Simple_repeat Simple_repeat 1 31 0 1448 137 34 0 chr12 703385 703619 -143578870 - L1MC1 LINE L1 -3 6330 6089 417 245 125 87 chr12 703619 703779 -143578710 + MIR SINE MIR 76 250 -12 2501 78 0 0 chr12 703944 704240 -143578249 + AluSq SINE Alu 1 296 -17 245 227 27 80 chr12 705092 705167 -143577322 + MIR SINE MIR 80 150 -112 353 222 57 45 chr12 705194 705296 -143577193 - L1ME4a LINE L1 0 6121 6015 1452 153 122 49 chr12 705296 705583 -143576906 + AluJb SINE Alu 1 308 -4 353 222 57 45 chr12 705583 705656 -143576833 - L1ME4a LINE L1 -106 6015 5944 2256 119 7 0 chr12 705662 705972 -143576517 + AluSx SINE Alu 1 312 0 635 188 132 0 chr12 706037 706181 -143576308 - MER45A DNA AcHobo -14 164 2 645 241 86 26 chr12 706198 706430 -143576059 - MIR SINE MIR 0 262 17 1307 80 0 0 chr12 706458 706620 -143575869 - AluY SINE Alu -14 297 136 386 241 52 43 chr12 706635 706751 -143575738 - L1ME4a LINE L1 -169 5952 5836 252 0 0 0 chr12 707134 707162 -143575327 + (CA)n Simple_repeat Simple_repeat 2 29 0 258 286 39 0 chr12 707278 707355 -143575134 + MIR SINE MIR 87 166 -96 458 138 21 28 chr12 707921 708156 -143574333 + AluJo SINE Alu 1 301 -11 2227 125 0 19 chr12 708156 708475 -143574014 + AluSp SINE Alu 1 313 0 2465 91 3 0 chr12 708485 708792 -143573697 + AluSg SINE Alu 1 308 -2 240 271 73 0 chr12 709685 709781 -143572708 - L1ME4a LINE L1 -4 6117 6015 487 125 0 0 chr12 710146 710226 -143572263 + FLAM_A SINE Alu 63 142 0 31 44 0 0 chr12 710228 710273 -143572216 + AT_rich Low_complexity Low_complexity 1 45 0 1634 114 57 0 chr12 710410 710638 -143571851 + AluSq SINE Alu 64 304 -9 732 242 47 30 chr12 710642 710939 -143571550 + L1ME LINE L1 5305 5606 -556 2226 69 3 49 chr12 710950 711255 -143571234 + AluY SINE Alu 1 291 -20 1310 93 0 0 chr12 711255 711417 -143571072 + AluSg/x SINE Alu 132 293 -17 235 357 0 0 chr12 711429 711541 -143570948 + L1ME LINE L1 5746 5857 -313 1109 287 41 53 chr12 711727 711762 -143570727 + MLT1I LTR MaLR 1 35 -374 2233 99 3 13 chr12 711762 712065 -143570424 + AluSc SINE Alu 1 300 -9 1109 287 41 53 chr12 712065 712443 -143570046 + MLT1I LTR MaLR 35 409 0 2463 94 0 0 chr12 712614 712923 -143569566 + AluSx SINE Alu 1 309 -3 2316 98 3 0 chr12 713656 713953 -143568536 + AluSp SINE Alu 1 298 -15 234 0 0 0 chr12 714121 714147 -143568342 + (TTTTTG)n Simple_repeat Simple_repeat 3 28 0 426 233 41 48 chr12 714296 714442 -143568047 - MER103 DNA DNA -18 148 4 748 148 9 9 chr12 715048 715163 -143567326 + FLAM_C SINE Alu 1 115 -18 251 71 24 0 chr12 715163 715205 -143567284 + (CA)n Simple_repeat Simple_repeat 2 44 0 22 0 0 0 chr12 715386 715408 -143567081 + AT_rich Low_complexity Low_complexity 1 22 0 426 207 0 0 chr12 715511 715598 -143566891 - MER113 DNA MER1_type? -434 87 1 200 35 35 0 chr12 715687 715716 -143566773 + (TTTTG)n Simple_repeat Simple_repeat 1 30 0 1118 95 0 0 chr12 715718 715855 -143566634 - FRAM SINE Alu -39 137 1 2599 59 3 0 chr12 716416 716723 -143565766 - AluY SINE Alu -3 308 1 3712 107 59 37 chr12 717687 717722 -143564767 - MER4B LTR ERV1 0 610 577 2394 77 20 0 chr12 717722 718021 -143564468 + AluSg SINE Alu 1 305 -5 3712 107 59 37 chr12 718021 718581 -143563908 - MER4B LTR ERV1 -33 577 2 2331 131 32 61 chr12 718650 718951 -143563538 - LTR23 LTR ERV1 -5 432 147 2406 93 0 3 chr12 718951 719263 -143563226 + AluY SINE Alu 1 311 0 2331 131 32 61 chr12 719263 719403 -143563086 - LTR23 LTR ERV1 -290 147 4 2017 110 7 7 chr12 719452 719751 -143562738 + AluSp SINE Alu 1 299 -14 825 182 150 96 chr12 720079 720390 -143562099 + MER51A LTR ERV1 328 640 0 1931 86 104 11 chr12 720449 720767 -143561722 - AluSp SINE Alu 0 313 5 3241 125 54 40 chr12 720830 721179 -143561310 + MER4A LTR ERV1 1 363 -237 1934 108 9 97 chr12 721179 721521 -143560968 + AluSq SINE Alu 2 313 0 3241 125 54 40 chr12 721521 721763 -143560726 + MER4A LTR ERV1 363 600 0 2561 63 3 0 chr12 721823 722125 -143560364 + AluY SINE Alu 1 303 -8 1297 203 96 4 chr12 722153 722414 -143560075 - AluJb SINE Alu -27 285 1 262 170 0 0 chr12 722414 722467 -143560022 - LTR49-int LTR ERV1 -3879 2879 2827 471 189 66 19 chr12 722573 722679 -143559810 - LTR49-int LTR ERV1 -2867 3464 3354 529 177 0 10 chr12 722736 722832 -143559657 - LTR49-int LTR ERV1 -2991 3340 3246 263 125 21 0 chr12 722865 722913 -143559576 - LTR49-int LTR ERV1 -3059 3272 3224 1105 140 0 48 chr12 722916 723102 -143559387 - AluSg/x SINE Alu -3 307 131 417 179 0 0 chr12 723102 723169 -143559320 - AluJ/FLAM SINE Alu -245 67 1 2226 136 43 111 chr12 723169 723468 -143559021 - LTR49-int LTR ERV1 -3099 3232 2915 2332 88 7 0 chr12 723468 723762 -143558727 + AluSp SINE Alu 2 297 -16 2226 136 43 111 chr12 723762 723797 -143558692 - LTR49-int LTR ERV1 -3416 2915 2879 2016 152 7 0 chr12 723797 724093 -143558396 + AluSx SINE Alu 1 298 -14 2226 136 43 111 chr12 724093 724309 -143558180 - LTR49-int LTR ERV1 -3452 2879 2718 237 217 0 0 chr12 724309 724355 -143558134 + MER54B LTR ERVL 746 791 -2 237 218 0 55 chr12 724355 724406 -143558083 - MER31A LTR ERV1 -401 84 37 2603 137 62 19 chr12 724406 724872 -143557617 + MER66B LTR ERV1 1 486 0 3006 207 46 31 chr12 724872 725586 -143556903 - LTR49-int LTR ERV1 -3674 2657 751 525 259 0 0 chr12 725586 725760 -143556729 + (TG)n Simple_repeat Simple_repeat 1 174 0 1969 158 31 74 chr12 725783 726231 -143556258 - LTR49-int LTR ERV1 -4346 1985 1557 484 308 104 37 chr12 726506 726834 -143555655 - LTR49-int LTR ERV1 -6063 695 346 671 165 33 8 chr12 727231 727352 -143555137 - LTR23 LTR ERV1 -21 416 293 917 144 0 7 chr12 727391 727530 -143554959 - AluJb SINE Alu -171 141 4 1056 98 22 120 chr12 727616 727841 -143554648 - LTR23 LTR ERV1 -141 296 94 4975 38 8 0 chr12 728322 728908 -143553581 + LTR10C LTR ERV1 1 591 0 1884 128 23 0 chr12 729319 729607 -143552882 + AluJo SINE Alu 12 305 0 881 200 0 0 chr12 729607 729757 -143552732 + AluJo/FRAM SINE Alu 133 282 -30 2370 106 0 0 chr12 729799 730101 -143552388 + AluSx SINE Alu 1 302 -10 202 139 28 0 chr12 730275 730311 -143552178 + GA-rich Low_complexity Low_complexity 2 38 0 219 225 79 45 chr12 730525 730614 -143551875 - MIR SINE MIR -115 147 56 497 228 79 0 chr12 730719 730846 -143551643 - MER5A DNA MER1_type -5 184 48 2814 177 46 41 chr12 731116 731639 -143550850 - MER82 DNA MER2_type 0 653 125 2574 55 3 0 chr12 731639 731946 -143550543 + AluY SINE Alu 1 308 -3 2814 177 46 41 chr12 731946 732011 -143550478 - MER82 DNA MER2_type -528 125 62 36 0 0 0 chr12 732155 732191 -143550298 + AT_rich Low_complexity Low_complexity 1 36 0 1862 151 3 13 chr12 732728 733039 -143549450 + AluJo SINE Alu 1 308 -4 2006 73 98 4 chr12 733708 733982 -143548507 - AluSx SINE Alu -1 311 12 235 54 89 71 chr12 733982 734038 -143548451 + L1MB2 LINE L1 6113 6169 -2 2202 123 0 7 chr12 734638 734946 -143547543 + AluSx SINE Alu 1 306 -6 718 138 7 7 chr12 735390 735528 -143546961 + CT-rich Low_complexity Low_complexity 3 140 0 756 208 0 0 chr12 735583 735713 -143546776 - FLAM_A SINE Alu -2 131 2 2121 140 0 10 chr12 735725 736039 -143546450 - AluSx SINE Alu -1 311 1 4288 168 32 64 chr12 736039 736902 -143545587 - L1MB4 LINE L1 -39 6141 5252 221 0 35 0 chr12 736902 736931 -143545558 + (TTTTG)n Simple_repeat Simple_repeat 2 31 0 4288 168 32 64 chr12 736931 737097 -143545392 - L1MB4 LINE L1 -928 5252 5082 2378 76 3 7 chr12 737097 737399 -143545090 - AluSg SINE Alu -9 301 1 4288 168 32 64 chr12 737399 737652 -143544837 - L1MB4 LINE L1 -1098 5082 4888 23 0 0 0 chr12 737909 737932 -143544557 + AT_rich Low_complexity Low_complexity 1 23 0 2366 97 7 0 chr12 737997 738307 -143544182 - AluSx SINE Alu 0 312 1 3537 25 7 0 chr12 738326 738734 -143543755 - L1PA5 LINE L1 -1 6153 5743 388 263 69 38 chr12 738858 739018 -143543471 + LTR16C LTR ERVL 233 397 -94 1449 150 0 67 chr12 739052 739160 -143543329 - AluJb SINE Alu -76 236 122 2386 69 3 0 chr12 739160 739448 -143543041 - AluY SINE Alu -22 289 1 1449 150 0 67 chr12 739448 739592 -143542897 - AluJb SINE Alu -190 122 1 590 197 51 0 chr12 739923 740040 -143542449 - L1MB7 LINE L1 -43 6141 6019 1286 201 46 111 chr12 740042 740456 -143542033 - MER21B LTR ERV1 -459 404 18 2350 100 0 19 chr12 740456 740767 -143541722 - AluSg SINE Alu -5 305 1 270 0 0 0 chr12 740767 740797 -143541692 + (T)n Simple_repeat Simple_repeat 1 30 0 203 231 15 15 chr12 740808 740873 -143541616 + T-rich Low_complexity Low_complexity 2 66 0 25 0 0 0 chr12 740874 740899 -143541590 + AT_rich Low_complexity Low_complexity 1 25 0 2387 102 0 10 chr12 740901 741215 -143541274 - AluSx SINE Alu -1 311 1 1111 110 23 64 chr12 741227 741338 -143541151 - L1MA4 LINE L1 -16 6284 6185 2002 157 0 0 chr12 741338 741643 -143540846 - AluJo SINE Alu -3 309 5 1111 110 23 64 chr12 741643 741749 -143540740 - L1MA4 LINE L1 -115 6185 6076 1209 190 0 74 chr12 741769 742014 -143540475 - L1MB7 LINE L1 -352 5832 5620 2411 84 0 3 chr12 742014 742313 -143540176 - AluSx SINE Alu -14 298 1 1209 190 0 74 chr12 742313 742379 -143540110 - L1MB7 LINE L1 -564 5620 5551 2853 125 29 7 chr12 742407 742854 -143539635 - MER4C LTR ERV1 -1 464 8 2345 84 3 7 chr12 743241 743538 -143538951 - AluSg SINE Alu -14 296 1 290 246 0 0 chr12 743660 743717 -143538772 - MLT1K LTR MaLR -4 584 528 195 42 0 0 chr12 743742 743766 -143538723 + (A)n Simple_repeat Simple_repeat 1 24 0 321 291 0 0 chr12 743878 743957 -143538532 - MLT1K LTR MaLR -178 410 332 296 77 0 0 chr12 744546 744585 -143537904 - MSTB LTR MaLR 0 426 388 2364 98 0 0 chr12 744588 744884 -143537605 + AluSg SINE Alu 1 296 -14 849 185 17 28 chr12 744892 745070 -143537419 + AluJb SINE Alu 137 312 0 1467 175 105 5 chr12 745074 745403 -143537086 - MSTB LTR MaLR -31 426 4 819 161 0 0 chr12 745483 745601 -143536888 - FLAM_C SINE Alu -25 118 1 2539 70 0 0 chr12 745603 745904 -143536585 - AluSx SINE Alu -11 301 1 1652 165 0 55 chr12 745904 746232 -143536257 - AluJb SINE Alu 0 312 3 644 251 110 57 chr12 746309 746400 -143536089 + MER115 DNA AcHobo 410 495 -198 1984 63 4 0 chr12 746400 746638 -143535851 - AluY SINE Alu -17 294 56 644 251 110 57 chr12 746638 746809 -143535680 + MER115 DNA AcHobo 495 686 -7 181 147 0 0 chr12 747284 747318 -143535171 - MIR SINE MIR -128 134 101 2326 88 0 0 chr12 747344 747638 -143534851 - AluSc SINE Alu -14 295 2 1876 172 0 0 chr12 747643 747933 -143534556 - AluJb SINE Alu -20 292 3 1172 80 73 0 chr12 747944 748094 -143534395 - AluSg/x SINE Alu -18 294 134 2271 108 0 3 chr12 748094 748389 -143534100 - AluSx SINE Alu -18 294 1 345 174 0 111 chr12 748466 748580 -143533909 - MER45A DNA AcHobo 0 178 81 437 299 113 59 chr12 748828 748854 -143533635 + L2 LINE L2 1528 1551 -1763 714 216 22 50 chr12 748854 748935 -143533554 - MER69A DNA AcHobo -2349 177 95 2190 88 51 0 chr12 748935 749230 -143533259 + AluY SINE Alu 1 310 -1 714 216 22 50 chr12 749230 749329 -143533160 - MER69A DNA AcHobo -2431 95 2 437 299 113 59 chr12 749329 749584 -143532905 + L2 LINE L2 1551 1791 -1523 1718 132 99 185 chr12 749584 750132 -143532357 - LTR36 LTR ERV1 -1 610 127 2209 38 48 31 chr12 750132 750421 -143532068 - AluY SINE Alu -6 305 12 1718 132 99 185 chr12 750421 750538 -143531951 - LTR36 LTR ERV1 -484 127 2 437 299 113 59 chr12 750538 750813 -143531676 + L2 LINE L2 1791 2115 -1199 1828 124 96 37 chr12 750859 751213 -143531276 - THE1C LTR MaLR 0 375 1 2119 112 0 30 chr12 751230 751533 -143530956 - AluSx SINE Alu -18 294 1 736 210 27 58 chr12 751623 751880 -143530609 - L2 LINE L2 -378 2936 2688 2305 113 3 0 chr12 751958 752268 -143530221 + AluSp SINE Alu 1 311 -2 1223 93 27 22 chr12 752268 752594 -143529895 + AluSg/x SINE Alu 129 458 0 1117 100 6 6 chr12 752600 752780 -143529709 + (GAAA)n Simple_repeat Simple_repeat 1 180 0 25 51 0 0 chr12 753348 753387 -143529102 + AT_rich Low_complexity Low_complexity 1 39 0 393 275 92 56 chr12 753595 753967 -143528522 + L1ME LINE L1 4686 5080 -1066 2302 143 37 8 chr12 753967 754344 -143528145 + MLT1B LTR MaLR 1 388 -2 393 275 92 56 chr12 754344 754436 -143528053 + L1ME LINE L1 5080 5167 -979 356 248 168 8 chr12 754586 754711 -143527778 - Charlie8 DNA MER1_type -2272 145 1 340 189 81 18 chr12 755356 755467 -143527022 + L1ME4a LINE L1 6004 6121 0 655 277 33 28 chr12 756177 756390 -143526099 - MIR SINE MIR -44 218 5 352 185 62 0 chr12 756806 756887 -143525602 + MIR SINE MIR 156 241 -21 557 273 95 63 chr12 757536 757884 -143524605 - LTR16A LTR ERVL 0 450 92 477 232 116 0 chr12 757993 758105 -143524384 - AluJo/FRAM SINE Alu -17 295 171 517 135 0 0 chr12 758105 758179 -143524310 + AluJb SINE Alu 192 265 -47 862 215 11 0 chr12 758901 759087 -143523402 - MER53 DNA DNA -1 188 1 985 141 37 0 chr12 759097 759260 -143523229 - MER3 DNA MER1_type -86 123 2 390 145 0 0 chr12 760024 760086 -143522403 + FLAM SINE Alu 71 132 -1 848 250 43 71 chr12 760154 760369 -143522120 + L1ME LINE L1 5360 5559 -562 2372 45 41 10 chr12 760369 760660 -143521829 - AluY SINE Alu -11 300 1 848 250 43 71 chr12 760660 760791 -143521698 + L1ME LINE L1 5559 5692 -429 2251 140 88 10 chr12 760811 761196 -143521293 - MSTA LTR MaLR -1 427 13 328 130 0 0 chr12 761196 761242 -143521247 - MSTA LTR MaLR -382 46 1 3638 228 50 50 chr12 761623 761703 -143520786 + L1MEc LINE L1 35 113 -6092 1599 67 5 14 chr12 761703 761913 -143520576 - AluY SINE Alu -21 290 83 3638 228 50 50 chr12 761913 762763 -143519726 + L1MEc LINE L1 113 961 -5244 2485 80 3 0 chr12 762763 763065 -143519424 + AluSp SINE Alu 1 303 -10 3638 228 50 50 chr12 763065 763148 -143519341 + L1MEc LINE L1 961 1008 -5197 1280 54 0 0 chr12 763148 763296 -143519193 + L1PA5 LINE L1 5998 6145 -9 3638 228 50 50 chr12 763296 763320 -143519169 + L1MEc LINE L1 1008 1030 -5175 270 229 0 0 chr12 763329 763390 -143519099 + L1MEc LINE L1 1034 1094 -5302 2220 149 65 88 chr12 763392 763667 -143518822 - L1MB8 LINE L1 -307 5871 5591 1526 173 39 14 chr12 763667 763950 -143518539 - AluJb SINE Alu -18 294 5 2220 149 65 88 chr12 763950 764083 -143518406 - L1MB8 LINE L1 -587 5591 5475 2126 99 60 0 chr12 764083 764367 -143518122 - AluSx SINE Alu -11 301 1 2220 149 65 88 chr12 764367 764481 -143518008 - L1MB8 LINE L1 -703 5475 5360 249 33 0 0 chr12 764502 764532 -143517957 + (TG)n Simple_repeat Simple_repeat 2 31 0 793 118 109 0 chr12 764537 764647 -143517842 - FRAM SINE Alu -22 154 33 2448 191 41 45 chr12 764648 764876 -143517613 - L1MB8 LINE L1 -1064 5082 4855 2377 75 0 3 chr12 764876 765170 -143517319 - AluY SINE Alu -18 293 1 2448 191 41 45 chr12 765170 765569 -143516920 - L1MB8 LINE L1 -1291 4855 4457 308 111 32 63 chr12 765573 765636 -143516853 - HY1 scRNA scRNA -1 111 51 370 183 0 0 chr12 765676 765758 -143516731 - L1MB8 LINE L1 -1688 4458 4377 1846 129 41 0 chr12 765763 766066 -143516423 + AluSx SINE Alu 1 314 0 297 217 29 152 chr12 766091 766229 -143516260 + MIR3 SINE MIR 88 208 0 1448 280 54 20 chr12 766388 766848 -143515641 - L3 LINE CR1 -5 1572 1097 1520 173 67 35 chr12 766858 767141 -143515348 + AluJb SINE Alu 1 292 -20 970 130 0 15 chr12 767161 767292 -143515197 + AluJo SINE Alu 1 129 -173 198 0 0 0 chr12 767343 767365 -143515124 + (T)n Simple_repeat Simple_repeat 1 22 0 474 303 47 14 chr12 767498 767771 -143514718 - L3 LINE CR1 -870 707 369 763 257 72 0 chr12 767865 768087 -143514402 - MIR SINE MIR 0 262 25 951 148 0 0 chr12 768607 768749 -143513740 + AluJo SINE Alu 137 278 -34 222 37 0 0 chr12 768762 768789 -143513700 + (GAAAA)n Simple_repeat Simple_repeat 2 28 0 29 47 0 0 chr12 769763 769806 -143512683 + AT_rich Low_complexity Low_complexity 1 43 0 1754 150 20 23 chr12 769808 770114 -143512375 - AluSx SINE Alu -7 305 1 2355 90 0 3 chr12 770183 770484 -143512005 + AluSp SINE Alu 1 300 -13 372 103 0 0 chr12 770538 770596 -143511893 + (TG)n Simple_repeat Simple_repeat 1 58 0 2383 54 3 10 chr12 770624 770918 -143511571 - AluY SINE Alu -19 292 1 2174 107 0 0 chr12 772174 772483 -143510006 - AluSx SINE Alu 0 309 1 2277 99 0 10 chr12 772777 773081 -143509408 + AluSx SINE Alu 1 301 -11 3503 218 63 24 chr12 773523 773579 -143508910 - L1ME1 LINE L1 -5 6230 6178 1579 141 118 8 chr12 773579 773842 -143508647 + AluJo SINE Alu 1 292 -20 3503 218 63 24 chr12 773842 774749 -143507740 - L1ME1 LINE L1 -57 6178 5227 877 148 0 40 chr12 774749 774898 -143507591 + FLAM_C SINE Alu 1 143 0 391 160 53 0 chr12 774905 774980 -143507509 - L1ME1 LINE L1 -985 5230 5152 722 194 40 0 chr12 774982 775106 -143507383 - FLAM_C SINE Alu -12 131 3 2385 90 3 0 chr12 775126 775425 -143507064 + AluSc SINE Alu 1 300 -9 390 171 53 0 chr12 775426 775502 -143506987 - L1ME1 LINE L1 -1059 5156 5077 * 1379 242 70 29 chr12 775496 775887 -143506602 - L1ME1 LINE L1 -3698 2517 2141 2368 71 0 19 chr12 775887 776195 -143506294 - AluY SINE Alu -9 302 1 1379 242 70 29 chr12 776195 776445 -143506044 - L1ME1 LINE L1 -4074 2141 1903 23 33 0 0 chr12 776445 776475 -143506014 + AT_rich Low_complexity Low_complexity 1 30 0 912 147 0 0 chr12 776475 776604 -143505885 - FLAM_C SINE Alu -3 130 2 316 259 84 35 chr12 776738 776881 -143505608 - L1ME1 LINE L1 -4577 1819 1670 184 97 0 32 chr12 776937 776968 -143505521 - MER5B DNA MER1_type -123 55 26 230 336 15 15 chr12 777164 777301 -143505188 + HAL1b LINE L1 1211 1347 -1 1535 99 9 0 chr12 777349 777560 -143504929 + AluSg/x SINE Alu 88 300 -10 465 284 117 94 chr12 777667 777878 -143504611 - L1MC4a LINE L1 -1884 5924 5719 1212 146 0 0 chr12 777878 778042 -143504447 - FRAM SINE Alu -2 164 1 465 284 117 94 chr12 778042 778065 -143504424 - L1MC4a LINE L1 -2089 5719 5698 2215 97 3 3 chr12 778065 778355 -143504134 - AluSg SINE Alu -6 304 15 465 284 117 94 chr12 778355 778574 -143503915 - L1MC4a LINE L1 -2110 5698 5460 189 0 0 0 chr12 778610 778631 -143503858 + (T)n Simple_repeat Simple_repeat 1 21 0 1633 173 66 4 chr12 778641 778913 -143503576 + AluJo SINE Alu 1 289 -23 308 289 161 51 chr12 778978 779023 -143503466 - L1MC4a LINE L1 -748 5398 5359 2173 112 3 0 chr12 779023 779319 -143503170 - AluSx SINE Alu -5 307 11 308 289 161 51 chr12 779319 779882 -143502607 - L1MC4a LINE L1 -787 5359 4723 333 186 0 29 chr12 780616 780710 -143501779 + AluJ/FRAM SINE Alu 224 302 0 230 238 0 0 chr12 782597 782639 -143499850 + polypyrimidine Low_complexity Low_complexity 1 42 0 344 291 173 53 chr12 784082 784481 -143498008 + L1M2 LINE L1 536 982 -5867 22 0 0 0 chr12 785206 785228 -143497261 + AT_rich Low_complexity Low_complexity 1 22 0 2249 100 3 0 chr12 786092 786401 -143496088 + AluSg SINE Alu 1 310 0 185 234 0 21 chr12 787324 787371 -143495118 - MIR SINE MIR -121 141 96 1315 80 0 58 chr12 787704 787892 -143494597 - AluSc SINE Alu -3 306 130 2498 72 3 0 chr12 788153 788460 -143494029 + AluSg SINE Alu 1 308 -2 2158 21 0 0 chr12 788768 789005 -143493484 - AluYb8 SINE Alu -2 316 80 33 25 0 0 chr12 789407 789447 -143493042 + AT_rich Low_complexity Low_complexity 1 40 0 28 29 0 0 chr12 789670 789705 -143492784 + AT_rich Low_complexity Low_complexity 1 35 0 2422 77 0 0 chr12 789726 790026 -143492463 - AluSg SINE Alu -10 300 1 728 228 162 5 chr12 790115 790312 -143492177 + MIR SINE MIR 5 232 -30 2026 111 6 59 chr12 791158 791482 -143491007 - AluSx SINE Alu -5 307 1 1255 183 71 80 chr12 792305 792443 -143490046 + MER2 DNA MER2_type 1 139 -206 2150 108 0 14 chr12 792443 792740 -143489749 - AluSx SINE Alu -2 310 18 1255 183 71 80 chr12 792740 792939 -143489550 + MER2 DNA MER2_type 139 335 -10 2284 103 6 0 chr12 793132 793443 -143489046 - AluSp SINE Alu 0 313 1 369 217 0 0 chr12 793479 793548 -143488941 - Tigger7 DNA MER2_type -31 2460 2392 800 118 118 123 chr12 793565 793699 -143488790 - Tigger7 DNA MER2_type -2243 244 110 2265 105 0 16 chr12 793699 794003 -143488486 + AluSq SINE Alu 1 299 -14 800 118 118 123 chr12 794003 794055 -143488434 - Tigger7 DNA MER2_type -2377 110 59 341 286 34 84 chr12 794324 794562 -143487927 - L2 LINE L2 -941 2373 2148 2433 79 7 0 chr12 794757 795062 -143487427 + AluSp SINE Alu 7 313 0 742 150 64 132 chr12 795224 795262 -143487227 - MER3 DNA MER1_type -3 206 167 1882 117 34 0 chr12 795262 795527 -143486962 - AluSq SINE Alu -39 274 1 742 150 64 132 chr12 795527 795663 -143486826 - MER3 DNA MER1_type -42 167 47 1656 181 7 10 chr12 795663 795951 -143486538 + AluJo SINE Alu 1 287 -25 742 150 64 132 chr12 795951 795995 -143486494 - MER3 DNA MER1_type -162 47 2 715 194 0 43 chr12 796046 796185 -143486304 + FLAM_C SINE Alu 1 133 0 204 208 198 52 chr12 796401 796497 -143485992 - L2 LINE L2 -1414 1900 1791 734 143 7 97 chr12 796498 796652 -143485837 + L1PB4 LINE L1 6011 6150 -6 23 0 0 0 chr12 796660 796683 -143485806 + AT_rich Low_complexity Low_complexity 1 23 0 2293 92 7 0 chr12 796882 797174 -143485315 - AluSg SINE Alu -16 294 1 2229 114 0 0 chr12 797176 797474 -143485015 - AluSx SINE Alu -14 298 1 2403 97 0 0 chr12 797638 797948 -143484541 - AluSg SINE Alu 0 310 1 2040 129 0 16 chr12 798524 798833 -143483656 - AluSx SINE Alu -8 304 1 2328 88 7 3 chr12 799208 799505 -143482984 - AluSg SINE Alu -12 298 1 944 185 82 26 chr12 799567 799601 -143482888 - L1MC4a LINE L1 -903 6905 6874 2030 121 10 13 chr12 799601 799899 -143482590 - AluSx SINE Alu -15 297 1 944 185 82 26 chr12 799899 800096 -143482393 - L1MC4a LINE L1 -934 6874 6661 685 187 261 84 chr12 800118 800370 -143482119 - MLT1A1 LTR MaLR 0 365 47 2474 70 3 3 chr12 800370 800671 -143481818 - AluSp SINE Alu -12 301 1 685 187 261 84 chr12 800671 800728 -143481761 - MLT1A1 LTR MaLR -318 47 1 558 146 222 27 chr12 800763 800948 -143481541 + Charlie5 DNA MER1_type 2364 2584 -28 2189 91 0 10 chr12 801395 801693 -143480796 - AluY SINE Alu -15 296 2 1632 115 0 0 chr12 801915 802132 -143480357 - AluSx SINE Alu -95 217 1 649 195 51 0 chr12 802219 802337 -143480152 - AluJb SINE Alu -178 134 11 254 228 89 50 chr12 802523 802624 -143479865 - L1ME4a LINE L1 -19 6102 5998 417 156 0 0 chr12 802802 802879 -143479610 + (TG)n Simple_repeat Simple_repeat 1 77 0 2453 65 7 0 chr12 803375 803668 -143478821 + AluSp SINE Alu 1 295 -18 231 303 202 0 chr12 804034 804133 -143478356 - L2 LINE L2 -4 3309 3191 234 224 224 36 chr12 804133 804325 -143478164 - L1ME4a LINE L1 -202 5919 5692 313 226 24 89 chr12 804968 805092 -143477397 - L1ME4a LINE L1 -458 5663 5548 603 162 0 23 chr12 805846 806081 -143476408 + AluJo SINE Alu 24 290 -22 216 237 130 95 chr12 806153 806322 -143476167 - MIR SINE MIR -30 232 58 1709 166 4 4 chr12 806450 806727 -143475762 - AluJo SINE Alu -31 281 5 393 39 0 0 chr12 806792 806843 -143475646 + (TG)n Simple_repeat Simple_repeat 2 52 0 2184 92 3 3 chr12 806843 807127 -143475362 - AluSc SINE Alu -25 284 1 2304 95 10 0 chr12 807549 807855 -143474634 - AluSc SINE Alu 0 309 1 31 0 0 0 chr12 808688 808719 -143473770 + AT_rich Low_complexity Low_complexity 1 31 0 2275 108 7 0 chr12 808723 809028 -143473461 - AluSx SINE Alu -5 307 1 21 0 0 0 chr12 809035 809056 -143473433 + AT_rich Low_complexity Low_complexity 1 21 0 2280 109 10 0 chr12 809759 810099 -143472390 - AluSx SINE Alu 0 343 1 445 200 178 0 chr12 811358 811493 -143470996 + MER112 DNA MER1_type 1 159 -101 210 37 0 0 chr12 811498 811525 -143470964 + (CAA)n Simple_repeat Simple_repeat 2 28 0 22 0 0 0 chr12 811970 811992 -143470497 + AT_rich Low_complexity Low_complexity 1 22 0 246 342 63 9 chr12 812727 812838 -143469651 - MIR SINE MIR -70 192 76 1834 114 8 0 chr12 812955 813201 -143469288 - AluSx SINE Alu -64 248 1 949 150 73 49 chr12 813204 813296 -143469193 - MER33 DNA MER1_type -2304 281 193 1933 124 3 54 chr12 813296 813611 -143468878 - AluJo SINE Alu -13 299 1 949 150 73 49 chr12 813611 813765 -143468724 - MER33 DNA MER1_type -2392 193 29 1249 152 4 52 chr12 813765 813996 -143468493 + AluJo SINE Alu 1 220 -92 1185 199 0 14 chr12 814050 814271 -143468218 + AluJo SINE Alu 3 220 -92 243 0 0 0 chr12 814306 814333 -143468156 + (A)n Simple_repeat Simple_repeat 1 27 0 1460 210 0 10 chr12 814337 814628 -143467861 + AluJo SINE Alu 3 290 -22 22 0 0 0 chr12 814631 814653 -143467836 + AT_rich Low_complexity Low_complexity 1 22 0 403 204 97 9 chr12 814909 815022 -143467467 - L1MA10 LINE L1 0 6334 6212 * 1740 260 96 28 chr12 815020 815800 -143466689 - HAL1 LINE L1 -499 2008 1176 2017 90 11 4 chr12 815820 816086 -143466403 - AluY SINE Alu -35 276 9 25 0 0 0 chr12 816151 816176 -143466313 + AT_rich Low_complexity Low_complexity 1 25 0 320 284 153 26 chr12 816201 816391 -143466098 - HAL1 LINE L1 -1631 876 663 479 324 135 30 chr12 816414 816867 -143465622 - L1M4 LINE L1 -3360 2786 2251 2133 128 3 0 chr12 816867 817164 -143465325 - AluSq SINE Alu -15 298 1 479 324 135 30 chr12 817164 817318 -143465171 - L1M4 LINE L1 -3895 2251 2115 21 0 0 0 chr12 817547 817568 -143464921 + AT_rich Low_complexity Low_complexity 1 21 0 191 337 20 61 chr12 817585 817683 -143464806 + MIR SINE MIR 4 97 -165 661 104 85 0 chr12 817704 817810 -143464679 - AluJb SINE Alu -193 119 5 440 177 125 0 chr12 817816 817912 -143464577 + MIR SINE MIR 155 262 0 186 43 0 0 chr12 818229 818252 -143464237 + (TG)n Simple_repeat Simple_repeat 2 24 0 1544 168 59 66 chr12 818274 818666 -143463823 - MLT2C1 LTR ERVL -8 389 1 2144 104 0 0 chr12 819006 819284 -143463205 + AluSg SINE Alu 3 280 -30 978 130 86 12 chr12 819932 820094 -143462395 - AluJo SINE Alu -10 302 129 523 255 78 52 chr12 820309 820540 -143461949 - MLT1L LTR MaLR -377 238 2 803 165 0 0 chr12 820669 820796 -143461693 - AluJo SINE Alu -180 132 6 198 224 0 0 chr12 821175 821224 -143461265 + CT-rich Low_complexity Low_complexity 3 51 0 321 26 0 0 chr12 821623 821661 -143460828 + (CA)n Simple_repeat Simple_repeat 1 38 0 2230 101 0 10 chr12 822703 823011 -143459478 - AluSg SINE Alu -5 305 1 23 33 0 0 chr12 823216 823246 -143459243 + AT_rich Low_complexity Low_complexity 1 30 0 247 253 154 11 chr12 823332 823423 -143459066 + MIR SINE MIR 111 214 -48 3018 171 60 23 chr12 824159 824807 -143457682 - L1MB8 LINE L1 -6 6172 5501 1637 196 73 100 chr12 824820 825169 -143457320 - L1MB8 LINE L1 -2106 4040 3683 1444 214 18 11 chr12 825169 825449 -143457040 - AluJo SINE Alu -30 282 1 1637 196 73 100 chr12 825449 825724 -143456765 - L1MB8 LINE L1 -2463 3683 3433 1545 154 91 51 chr12 825724 826074 -143456415 + THE1B LTR MaLR 1 364 0 1637 196 73 100 chr12 826074 826121 -143456368 - L1MB8 LINE L1 -2713 3433 3386 1607 161 58 14 chr12 826280 826571 -143455918 - AluSx SINE Alu -8 304 1 494 247 60 0 chr12 826592 826742 -143455747 - L1MEc LINE L1 -4320 2076 1918 542 84 0 0 chr12 826902 826973 -143455516 - AluS SINE Alu -242 71 1 2247 89 0 13 chr12 828060 828364 -143454125 + AluSx SINE Alu 1 300 -12 2450 62 0 3 chr12 828585 828889 -143453600 - AluY SINE Alu -8 303 1 23 0 0 0 chr12 829048 829071 -143453418 + AT_rich Low_complexity Low_complexity 1 23 0 1849 142 3 27 chr12 829533 829828 -143452661 - AluJb SINE Alu -24 288 1 1365 194 0 86 chr12 829960 830082 -143452407 + AluJo SINE Alu 5 136 -176 2044 112 7 0 chr12 830082 830359 -143452130 - AluSx SINE Alu -10 302 24 1365 194 0 86 chr12 830359 830550 -143451939 + AluJo SINE Alu 136 291 -21 848 163 113 17 chr12 830558 830797 -143451692 - MER69 DNA AcHobo -100 2426 2165 21 0 0 0 chr12 830821 830842 -143451647 + AT_rich Low_complexity Low_complexity 1 21 0 227 44 44 0 chr12 830856 830901 -143451588 - L1MB4 LINE L1 0 6180 6134 369 0 0 0 chr12 831821 831862 -143450627 + (TG)n Simple_repeat Simple_repeat 2 42 0 1446 169 8 0 chr12 831862 832104 -143450385 - AluJo SINE Alu -67 245 2 1074 91 0 9 chr12 833898 834161 -143448328 + AluSx SINE Alu 1 307 -3 1605 147 13 102 chr12 834665 834827 -143447662 - L1MB3 LINE L1 -11 6172 6062 1892 95 0 0 chr12 834827 835070 -143447419 - AluSq SINE Alu -70 243 1 1605 147 13 102 chr12 835070 835289 -143447200 - L1MB3 LINE L1 -121 6062 5825 212 76 76 45 chr12 835302 835368 -143447121 + (TATAA)n Simple_repeat Simple_repeat 5 72 0 1617 183 25 53 chr12 835368 835761 -143446728 - L1MB3 LINE L1 -364 5816 5435 22 0 0 0 chr12 836255 836277 -143446212 + AT_rich Low_complexity Low_complexity 1 22 0 762 139 9 0 chr12 837575 837690 -143444799 + FLAM_C SINE Alu 2 117 -16 2683 32 0 0 chr12 838106 838416 -143444073 - AluY SINE Alu -1 310 1 564 181 147 0 chr12 838688 838804 -143443685 - FLAM_C SINE Alu 0 133 1 2388 89 0 0 chr12 839159 839461 -143443028 - AluSq SINE Alu -11 302 1 32 0 0 0 chr12 839623 839655 -143442834 + AT_rich Low_complexity Low_complexity 1 32 0 2237 97 10 0 chr12 840367 840656 -143441833 + AluSg SINE Alu 1 292 -18 206 258 106 30 chr12 842745 842811 -143439678 - L2 LINE L2 -4 3309 3239 368 229 41 118 chr12 843065 843310 -143439179 + L1MEd LINE L1 983 1208 -4911 1664 159 31 7 chr12 843365 843655 -143438834 + AluJo SINE Alu 9 305 -7 2151 82 26 49 chr12 844429 844734 -143437755 + AluSx SINE Alu 1 298 -14 3410 121 17 19 chr12 845070 845598 -143436891 - MER1A DNA MER1_type 0 527 1 321 306 136 35 chr12 846279 846537 -143435952 + L1MEd LINE L1 82 365 -5754 1477 176 3 60 chr12 846666 846985 -143435504 - AluJo SINE Alu -11 301 1 331 243 134 102 chr12 847167 847608 -143434881 + L1MEd LINE L1 682 1136 -4983 1078 105 0 0 chr12 847608 847751 -143434738 + AluSg/x SINE Alu 155 297 -12 2228 92 3 44 chr12 848054 848371 -143434118 + AluSx SINE Alu 1 304 -8 869 184 32 0 chr12 848405 848590 -143433899 - L1MB5 LINE L1 0 6174 5984 423 258 53 33 chr12 848704 848855 -143433634 + MIR3 SINE MIR 14 167 -41 2247 192 80 12 chr12 848916 849020 -143433469 - L1MB5 LINE L1 -36 6138 6035 1450 224 171 9 chr12 849020 849725 -143432764 - L1MC4 LINE L1 -743 5639 5401 1047 145 98 28 chr12 849733 849947 -143432542 - MER46A DNA MER2_type -7 229 1 5505 218 62 28 chr12 849951 850864 -143431625 - L1MC4 LINE L1 -981 5401 4408 1722 181 7 16 chr12 850864 851173 -143431316 - AluJo SINE Alu -6 306 1 5505 218 62 28 chr12 851173 851861 -143430628 - L1MC4 LINE L1 -1974 4408 3745 4361 191 105 56 chr12 851875 852485 -143430004 - L1MC4 LINE L1 -3434 2948 2369 2385 88 0 3 chr12 852485 852790 -143429699 - AluSg SINE Alu -6 304 1 4361 191 105 56 chr12 852790 854034 -143428455 - L1MC4 LINE L1 -4013 2369 997 190 260 250 0 chr12 854040 854140 -143428349 - MIR SINE MIR -10 252 128 2021 134 0 13 chr12 854298 854605 -143427884 - AluSx SINE Alu -8 304 2 26 30 0 0 chr12 855168 855201 -143427288 + AT_rich Low_complexity Low_complexity 1 33 0 24 32 0 0 chr12 855335 855366 -143427123 + AT_rich Low_complexity Low_complexity 1 31 0 544 182 54 68 chr12 855478 855626 -143426863 - L1ME2 LINE L1 -52 6112 5967 322 286 61 56 chr12 855756 855987 -143426502 - L1MCa LINE L1 -4196 1884 1653 271 153 129 0 chr12 856077 856162 -143426327 + L1M4 LINE L1 1257 1352 -5190 625 205 41 41 chr12 856351 856522 -143425967 - L1MCa LINE L1 -5580 490 320 982 181 52 5 chr12 856526 856719 -143425770 + MER3 DNA MER1_type 3 204 -5 488 240 143 41 chr12 856832 857028 -143425461 - L1MCa LINE L1 -5853 217 2 2190 108 0 0 chr12 857914 858226 -143424263 - AluSx SINE Alu 0 312 1 30 77 0 0 chr12 858314 858379 -143424110 + AT_rich Low_complexity Low_complexity 1 65 0 2201 112 0 26 chr12 858413 858726 -143423763 + AluSx SINE Alu 1 305 -7 1096 186 0 61 chr12 858835 859066 -143423423 - MER20 DNA MER1_type -1 218 2 476 262 160 44 chr12 861115 861478 -143421011 - L1MC5 LINE L1 -207 7754 7350 1658 149 51 70 chr12 861529 861653 -143420836 + Charlie1b DNA MER1_type 104 229 -2532 2248 111 0 0 chr12 861653 861950 -143420539 + AluSx SINE Alu 1 297 -15 1658 149 51 70 chr12 861950 862253 -143420236 + Charlie1b DNA MER1_type 229 523 0 2395 71 0 0 chr12 862466 862760 -143419729 - AluY SINE Alu -5 306 13 191 376 55 24 chr12 863452 863617 -143418872 + L2 LINE L2 2415 2584 -730 356 340 97 59 chr12 864231 864552 -143417937 - L2 LINE L2 -16 3256 2924 378 288 56 24 chr12 864963 865088 -143417401 + MIR SINE MIR 26 154 -108 1762 144 3 63 chr12 865434 865753 -143416736 + AluJb SINE Alu 1 300 -12 282 202 149 43 chr12 865930 866024 -143416465 - L2 LINE L2 -16 3297 3194 2114 122 7 3 chr12 866068 866363 -143416126 + AluSx SINE Alu 1 296 -16 2596 223 38 18 chr12 867341 867420 -143415069 - L1MB8 LINE L1 0 6178 6102 2623 110 34 63 chr12 867420 867689 -143414800 - MER57B LTR ERV1 0 434 182 2428 90 0 0 chr12 867689 868000 -143414489 + AluSx SINE Alu 1 311 -1 2623 110 34 63 chr12 868000 868177 -143414312 - MER57B LTR ERV1 -252 182 1 2596 223 38 18 chr12 868177 868476 -143414013 - L1MB8 LINE L1 -76 6102 5810 303 28 0 0 chr12 868476 868512 -143413977 + (TG)n Simple_repeat Simple_repeat 2 37 0 2596 223 38 18 chr12 868512 868799 -143413690 - L1MB8 LINE L1 -368 5810 5499 1791 164 4 7 chr12 868802 869108 -143413381 - AluJb SINE Alu 0 310 6 740 208 77 11 chr12 869109 869292 -143413197 - MLT1C LTR MaLR -272 195 1 320 301 63 28 chr12 869301 869444 -143413045 - L2 LINE L2 -5 3308 3161 322 346 45 11 chr12 869735 869914 -143412575 - L2 LINE L2 -601 2713 2529 26 64 0 0 chr12 870060 870107 -143412382 + AT_rich Low_complexity Low_complexity 1 47 0 1876 121 7 37 chr12 870126 870424 -143412065 - AluSx SINE Alu -23 289 1 1381 197 31 76 chr12 870444 870518 -143411971 + MER58B DNA MER1_type 3 79 -2341 1665 167 0 21 chr12 870518 870806 -143411683 - AluJo SINE Alu -7 305 24 1381 197 31 76 chr12 870806 871086 -143411403 + MER58B DNA MER1_type 79 341 0 2019 149 39 42 chr12 871491 871900 -143410589 - L1MB7 LINE L1 -21 6163 5756 1658 178 27 56 chr12 872001 872377 -143410112 - MLT1A1 LTR MaLR 0 365 1 185 174 87 0 chr12 872457 872503 -143409986 + L2 LINE L2 3264 3313 0 255 103 0 0 chr12 872680 872719 -143409770 + MADE1 DNA Mariner 42 80 0 189 0 0 0 chr12 872875 872896 -143409593 + (TTTTA)n Simple_repeat Simple_repeat 2 22 0 243 0 0 0 chr12 873321 873348 -143409141 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 1959 138 0 3 chr12 873351 873634 -143408855 - AluSx SINE Alu -30 282 1 1778 143 77 29 chr12 873658 874037 -143408452 - Charlie1 DNA MER1_type -19 2742 2346 274 304 0 14 chr12 874039 874108 -143408381 - Charlie1 DNA MER1_type -2691 70 3 389 204 261 42 chr12 874129 874271 -143408218 + MER5A DNA MER1_type 11 183 -6 1931 134 6 19 chr12 874519 874833 -143407656 - AluSx SINE Alu -2 310 1 26 0 0 0 chr12 875210 875236 -143407253 + AT_rich Low_complexity Low_complexity 1 26 0 2827 13 0 0 chr12 875283 875592 -143406897 - AluYa5 SINE Alu -2 309 1 22 70 0 0 chr12 875617 875660 -143406829 + AT_rich Low_complexity Low_complexity 1 43 0 416 240 39 10 chr12 875930 876034 -143406455 + MIR SINE MIR 14 120 -142 292 281 157 7 chr12 876260 876413 -143406076 - MIR SINE MIR -6 256 81 204 412 0 15 chr12 877990 878058 -143404431 + MIR3 SINE MIR 15 81 -127 2181 104 13 13 chr12 878194 878502 -143403987 - AluSc SINE Alu -1 308 1 180 0 0 0 chr12 878894 878914 -143403575 + (T)n Simple_repeat Simple_repeat 1 20 0 7714 20 3 1 chr12 879968 881378 -143401111 - L1PA4 LINE L1 -4 6151 4741 1604 164 10 10 chr12 884156 884448 -143398041 - AluJo SINE Alu -20 292 1 1560 167 64 4 chr12 884483 884747 -143397742 + AluJo SINE Alu 1 280 -32 2175 92 34 0 chr12 884753 885045 -143397444 - AluSx SINE Alu -10 302 1 1157 189 160 39 chr12 885129 885436 -143397053 + MER2 DNA MER2_type 1 344 0 2425 78 0 3 chr12 886229 886536 -143395953 - AluSc SINE Alu -3 306 1 22 56 0 19 chr12 886538 886563 -143395926 + AT_rich Low_complexity Low_complexity 1 25 -28 2090 127 0 19 chr12 886563 886877 -143395612 + AluSx SINE Alu 1 308 -4 22 56 0 19 chr12 886877 886905 -143395584 + AT_rich Low_complexity Low_complexity 25 53 0 1966 159 3 0 chr12 888592 888887 -143393602 - AluSx SINE Alu -16 296 1 258 376 56 16 chr12 889045 889170 -143393319 + MIR SINE MIR 21 150 -58 1858 136 3 42 chr12 890105 890413 -143392076 - AluJo SINE Alu -16 296 1 181 85 0 64 chr12 890437 890484 -143392005 + (TAGA)n Simple_repeat Simple_repeat 1 44 0 2096 123 7 19 chr12 894498 894808 -143387681 - AluSx SINE Alu -6 306 1 2146 89 7 3 chr12 896774 897056 -143385433 - AluSc SINE Alu -25 284 2 2230 97 10 0 chr12 897239 897537 -143384952 + AluSx SINE Alu 1 301 -11 26 0 0 0 chr12 898133 898159 -143384330 + AT_rich Low_complexity Low_complexity 1 26 0 22 70 0 0 chr12 899888 899931 -143382558 + AT_rich Low_complexity Low_complexity 1 43 0 1093 204 5 15 chr12 900959 901165 -143381324 - MER20 DNA MER1_type -2 217 14 2142 121 0 0 chr12 902010 902300 -143380189 - AluSx SINE Alu -22 290 1 1771 99 48 79 chr12 902512 902834 -143379655 - AluSx SINE Alu 0 313 1 882 144 8 0 chr12 904432 904564 -143377925 + FRAM SINE Alu 26 158 -18 658 340 25 5 chr12 905071 905274 -143377215 - MIR SINE MIR -44 218 12 2370 68 0 3 chr12 906524 906818 -143375671 + AluY SINE Alu 1 293 -18 343 249 39 25 chr12 907050 907186 -143375303 + L1PA8A LINE L1 5671 5808 -323 314 267 28 20 chr12 907252 907401 -143375088 + L1ME4a LINE L1 1197 6049 0 2391 93 0 3 chr12 907450 907762 -143374727 - AluSp SINE Alu -2 311 1 329 153 17 0 chr12 909317 909376 -143373113 - HsTC2 DNA Tc2 -2 1896 1837 216 0 0 0 chr12 909911 909935 -143372554 + (T)n Simple_repeat Simple_repeat 1 24 0 182 309 0 0 chr12 912518 912560 -143369929 - L3b LINE CR1 -22 1561 1520 2041 116 0 7 chr12 912599 912876 -143369613 - AluSx SINE Alu -17 295 21 1100 127 0 0 chr12 914275 914432 -143368057 + AluSg/x SINE Alu 131 287 -23 2293 84 0 3 chr12 919934 920221 -143362268 + AluY SINE Alu 1 286 -25 2286 110 0 3 chr12 920349 920650 -143361839 - AluSx SINE Alu -12 300 1 2235 102 7 0 chr12 921541 921835 -143360654 - AluSp SINE Alu -17 296 1 219 88 0 0 chr12 921991 922025 -143360464 + (T)n Simple_repeat Simple_repeat 1 34 0 379 203 14 0 chr12 922094 922168 -143360321 + Charlie1 DNA MER1_type 46 120 -2641 1102 139 12 6 chr12 922170 922335 -143360154 + AluJo SINE Alu 127 292 -20 337 216 137 10 chr12 922335 922437 -143360052 + Charlie1 DNA MER1_type 2149 2263 -498 1280 26 0 7 chr12 922475 922628 -143359861 - L1PA4 LINE L1 -3 6152 6001 844 195 113 15 chr12 922655 922850 -143359639 - MER58A DNA MER1_type 0 224 11 251 257 114 0 chr12 923111 923216 -143359273 + L1MC4a LINE L1 5371 5487 -2321 408 216 84 96 chr12 923353 923370 -143359119 + L1MC4a LINE L1 5716 5732 -2076 1879 172 0 7 chr12 923370 923673 -143358816 + AluJb SINE Alu 1 301 -11 408 216 84 96 chr12 923673 923822 -143358667 + L1MC4a LINE L1 5732 5880 -1928 2343 82 0 0 chr12 923939 924245 -143358244 + AluY SINE Alu 1 306 0 2215 123 0 0 chr12 924333 924626 -143357863 + AluSx SINE Alu 1 293 -19 25 31 0 0 chr12 925812 925844 -143356645 + AT_rich Low_complexity Low_complexity 1 32 0 2277 131 0 0 chr12 925844 926156 -143356333 - AluSx SINE Alu 0 312 1 477 0 0 0 chr12 927284 927337 -143355152 + (CA)n Simple_repeat Simple_repeat 1 53 0 236 198 74 0 chr12 927420 927501 -143354988 + (TTA)n Simple_repeat Simple_repeat 1 87 0 2403 92 3 0 chr12 928600 928903 -143353586 + AluY SINE Alu 1 304 -7 971 169 0 41 chr12 928970 929142 -143353347 - AluJo/FRAM SINE Alu -18 294 130 2224 96 7 3 chr12 929145 929436 -143353053 - AluSx SINE Alu -20 292 1 1215 125 171 75 chr12 929696 929977 -143352512 - AluSx SINE Alu -4 308 1 201 74 0 0 chr12 930405 930432 -143352057 + (T)n Simple_repeat Simple_repeat 1 27 0 1961 91 4 8 chr12 930432 930684 -143351805 - AluSq SINE Alu -62 251 1 1924 147 0 17 chr12 932412 932711 -143349778 + AluJb SINE Alu 1 294 -18 182 250 0 0 chr12 933202 933242 -143349247 + L2 LINE L2 3224 3263 -9 221 219 0 55 chr12 935184 935257 -143347232 - L2 LINE L2 -36 3277 3209 1295 181 82 25 chr12 937153 937434 -143345055 + AluJo SINE Alu 1 297 -15 2224 111 3 7 chr12 937434 937731 -143344758 + AluSx SINE Alu 1 297 -15 195 42 0 0 chr12 941091 941115 -143341374 + (CCA)n Simple_repeat Simple_repeat 3 26 0 21 0 0 0 chr12 941671 941692 -143340797 + AT_rich Low_complexity Low_complexity 1 21 0 1895 116 10 43 chr12 942129 942430 -143340059 + AluSx SINE Alu 1 291 -21 945 149 124 146 chr12 942559 942915 -143339574 + MER46B DNA MER2_type 5 227 -9 731 228 25 0 chr12 942976 943138 -143339351 + FRAM SINE Alu 1 166 0 1574 147 90 4 chr12 945271 945550 -143336939 + AluJb SINE Alu 1 303 -9 2221 114 10 7 chr12 946105 946412 -143336077 - AluSx SINE Alu -4 308 1 200 269 0 0 chr12 946776 946843 -143335646 + (CTG)n Simple_repeat Simple_repeat 3 69 0 647 143 109 0 chr12 947997 948116 -143334373 + AluJb SINE Alu 2 133 -179 1236 109 0 75 chr12 948146 948347 -143334142 + AluSg/x SINE Alu 109 294 -18 890 267 99 44 chr12 948357 948784 -143333705 + L1ME3A LINE L1 5470 5962 -208 1822 141 6 44 chr12 948784 949104 -143333385 - AluJo SINE Alu -4 308 1 890 267 99 44 chr12 949104 949310 -143333179 + L1ME3A LINE L1 5962 6155 -15 628 161 28 133 chr12 949351 949562 -143332927 + L1ME3A LINE L1 5902 6090 -80 2078 119 25 0 chr12 949569 949854 -143332635 + AluSq SINE Alu 11 302 -11 2142 99 3 20 chr12 949859 950162 -143332327 + AluSx SINE Alu 1 298 -14 2032 135 7 7 chr12 950166 950463 -143332026 + AluSq SINE Alu 1 297 -16 1269 109 0 0 chr12 950463 950628 -143331861 + AluSg/x SINE Alu 134 298 -14 2391 224 70 19 chr12 950635 950670 -143331819 + L1M4 LINE L1 2379 2411 -3735 2499 60 0 13 chr12 950670 950972 -143331517 + AluY SINE Alu 1 298 -13 2391 224 70 19 chr12 950972 951722 -143330767 + L1M4 LINE L1 2411 3204 -2942 1596 141 0 20 chr12 951735 951983 -143330506 + AluJb SINE Alu 16 258 -54 527 160 0 84 chr12 951987 952083 -143330406 + AluJb SINE Alu 190 274 -38 216 0 0 0 chr12 952083 952107 -143330382 + (AGATG)n Simple_repeat Simple_repeat 5 28 0 527 160 0 84 chr12 952107 952141 -143330348 + AluJb SINE Alu 274 309 -3 3187 146 32 53 chr12 952142 952219 -143330270 + L1MB2 LINE L1 5319 5396 -775 2288 103 3 0 chr12 952219 952511 -143329978 + AluSx SINE Alu 1 293 -19 3187 146 32 53 chr12 952511 953097 -143329392 + L1MB2 LINE L1 5396 5968 -203 515 183 77 0 chr12 953105 953209 -143329280 + FLAM_C SINE Alu 22 133 -10 1879 139 0 80 chr12 953214 953553 -143328936 - AluSx SINE Alu 0 312 1 250 153 0 0 chr12 953572 953628 -143328861 + FAM SINE Alu 126 169 -6 1313 168 30 99 chr12 953656 953989 -143328500 + AluJo SINE Alu 3 312 0 704 176 204 0 chr12 953989 954165 -143328324 + L1MB2 LINE L1 5960 6171 0 343 147 18 110 chr12 954159 954171 -143328318 + L1M4 LINE L1 3684 3696 -2450 * 2133 105 13 10 chr12 954171 954476 -143328013 + AluSx SINE Alu 1 306 -6 343 147 18 110 chr12 954476 954523 -143327966 + L1M4 LINE L1 3696 3731 -2415 2351 72 3 7 chr12 954523 954814 -143327675 + AluSg SINE Alu 1 290 -20 343 147 18 110 chr12 954814 954862 -143327627 + L1M4 LINE L1 3731 3782 -2364 2513 60 0 0 chr12 955342 955644 -143326845 - AluY SINE Alu -9 302 1 312 241 37 37 chr12 956042 956150 -143326339 - L2 LINE L2 -3 3310 3203 2222 159 56 31 chr12 956416 956605 -143325884 + MSTB LTR MaLR 2 185 -241 1844 153 0 34 chr12 956605 956926 -143325563 + AluJo SINE Alu 1 310 -2 2222 159 56 31 chr12 956926 957150 -143325339 + MSTB LTR MaLR 185 425 -1 233 266 91 106 chr12 957814 957979 -143324510 + Charlie2 DNA MER1_type 117 280 -2502 2303 102 3 0 chr12 957979 958273 -143324216 + AluSx SINE Alu 1 295 -17 233 266 91 106 chr12 958273 958306 -143324183 + Charlie2 DNA MER1_type 280 312 -2470 2149 194 47 118 chr12 958322 958624 -143323865 + Charlie2 DNA MER1_type 1872 2194 -668 2332 82 0 16 chr12 958624 958927 -143323562 + AluSp SINE Alu 1 298 -15 2149 194 47 118 chr12 958927 959307 -143323182 + Charlie2 DNA MER1_type 2194 2479 -383 1668 154 0 4 chr12 959307 959560 -143322929 - AluJo SINE Alu -60 252 1 2149 194 47 118 chr12 959560 959765 -143322724 + Charlie2 DNA MER1_type 2479 2697 -165 379 209 338 14 chr12 959765 959913 -143322576 - MER6B DNA MER2_type 0 210 15 * 736 185 39 22 chr12 959902 960080 -143322409 + Charlie2 DNA MER1_type 2680 2860 -2 841 117 0 17 chr12 960663 960783 -143321706 + FRAM SINE Alu 37 154 -22 2093 128 0 13 chr12 961079 961385 -143321104 + AluJb SINE Alu 1 302 -10 432 126 207 0 chr12 961793 961880 -143320609 - Charlie1 DNA MER1_type -33 2728 2624 * 880 231 60 5 chr12 961879 962078 -143320411 - Charlie1 DNA MER1_type -2551 210 1 1028 85 8 0 chr12 962471 962601 -143319888 + AluSg SINE Alu 1 131 -179 2309 105 0 0 chr12 962609 962904 -143319585 + AluSx SINE Alu 3 297 -15 2255 96 7 3 chr12 963571 963872 -143318617 + AluY SINE Alu 1 302 -9 1093 183 177 19 chr12 964132 964234 -143318255 + MER46B DNA MER2_type 2 87 -2644 1760 145 69 7 chr12 964234 964523 -143317966 + AluJo SINE Alu 1 307 -5 1093 183 177 19 chr12 964523 964579 -143317910 + MER46B DNA MER2_type 87 133 -2598 2277 91 20 0 chr12 964579 964876 -143317613 + AluSx SINE Alu 1 303 -9 1093 183 177 19 chr12 964876 965027 -143317462 + MER46B DNA MER2_type 133 236 0 884 129 43 0 chr12 965035 965175 -143317314 + L1MA9 LINE L1 6162 6307 -5 2207 111 0 7 chr12 965225 965514 -143316975 + AluSx SINE Alu 1 287 -25 190 176 0 0 chr12 965740 965774 -143316715 + MER5A DNA MER1_type 21 54 -135 1233 167 17 25 chr12 965776 966016 -143316473 - AluJo SINE Alu -11 301 64 2401 91 0 0 chr12 966602 966900 -143315589 + AluSg SINE Alu 1 298 -12 1276 119 11 0 chr12 966900 967076 -143315413 + AluSg/x SINE Alu 132 309 -1 680 188 100 109 chr12 967376 967605 -143314884 + MIR SINE MIR 21 247 -15 237 311 40 0 chr12 967636 967710 -143314779 - L2 LINE L2 -5 3308 3232 1302 163 111 12 chr12 967714 967795 -143314694 + AluJo SINE Alu 29 101 -211 2334 87 0 3 chr12 967795 968093 -143314396 + AluSg SINE Alu 1 297 -13 1302 163 111 12 chr12 968093 968263 -143314226 + AluJo SINE Alu 101 305 -7 947 277 83 75 chr12 968274 968999 -143313490 - L2 LINE L2 -681 2633 1903 2092 95 9 54 chr12 969067 969382 -143313107 - AluY SINE Alu -10 301 1 1135 158 0 12 chr12 969416 969587 -143312902 + FAM SINE Alu 1 169 -6 1030 180 40 40 chr12 969913 970113 -143312376 - AluJo SINE Alu -25 287 88 274 367 109 9 chr12 970116 970345 -143312144 + L3 LINE CR1 255 506 -1071 180 282 56 28 chr12 970399 970470 -143312019 + L3 LINE CR1 502 574 -1003 700 339 42 44 chr12 970487 970944 -143311545 - L2 LINE L2 -2595 719 264 213 290 171 38 chr12 970944 971237 -143311252 + L2 LINE L2 1635 1966 -1348 1063 255 199 8 chr12 971237 971718 -143310771 - MLT1F1 LTR MaLR 0 567 1 409 339 189 13 chr12 971718 971834 -143310655 + L2 LINE L2 1962 2056 -1258 2472 92 0 0 chr12 971834 972140 -143310349 - AluSx SINE Alu -6 306 1 409 339 189 13 chr12 972140 972474 -143310015 + L2 LINE L2 2056 2491 -823 2164 81 63 0 chr12 972590 972875 -143309614 - AluSx SINE Alu -9 303 1 221 262 0 0 chr12 972877 972919 -143309570 + L3 LINE CR1 1528 1569 -8 2092 137 0 3 chr12 973183 973483 -143309006 + AluSx SINE Alu 1 299 -13 1516 125 10 0 chr12 973545 973753 -143308736 + AluSc SINE Alu 83 292 -17 21 0 0 0 chr12 973872 973893 -143308596 + AT_rich Low_complexity Low_complexity 1 21 0 2011 94 62 0 chr12 973894 974170 -143308319 - AluSx SINE Alu -8 304 12 791 247 0 18 chr12 974170 974336 -143308153 - AluJo SINE Alu -148 164 2 2101 212 84 29 chr12 974588 974833 -143307656 - L1ME3A LINE L1 -219 5951 5721 2160 127 0 3 chr12 974833 975141 -143307348 - AluSx SINE Alu -5 307 1 2036 136 6 40 chr12 975143 975466 -143307023 - AluJb SINE Alu 0 312 1 2101 212 84 29 chr12 975466 975933 -143306556 - L1ME3A LINE L1 -449 5721 5197 996 116 0 20 chr12 975948 976094 -143306395 + FLAM_C SINE Alu 1 143 0 1101 265 119 13 chr12 976113 976649 -143305840 - L1ME3A LINE L1 -1526 4620 4028 2381 210 27 10 chr12 976649 977130 -143305359 - REP3 LTR ERV 0 562 74 332 272 124 18 chr12 977162 977331 -143305158 - L1ME3A LINE L1 -2114 4032 3846 2378 104 0 0 chr12 977375 977684 -143304805 - AluSg SINE Alu -1 309 1 387 0 0 0 chr12 977786 977829 -143304660 + (TG)n Simple_repeat Simple_repeat 2 44 0 1684 155 42 0 chr12 978155 978420 -143304069 - AluJb SINE Alu -36 276 1 22 0 0 0 chr12 978685 978707 -143303782 + AT_rich Low_complexity Low_complexity 1 22 0 23 54 0 0 chr12 978868 978905 -143303584 + AT_rich Low_complexity Low_complexity 1 37 0 2408 78 3 0 chr12 978941 979236 -143303253 - AluSx SINE Alu -16 296 1 1004 199 130 4 chr12 979249 979380 -143303109 - AluJo SINE Alu -24 288 175 1325 200 51 44 chr12 979380 979675 -143302814 - AluJb SINE Alu -15 297 1 1004 199 130 4 chr12 979675 979774 -143302715 - AluJo SINE Alu -137 175 29 246 86 21 75 chr12 979905 979998 -143302491 + (TA)n Simple_repeat Simple_repeat 2 89 0 361 303 21 28 chr12 980155 980297 -143302192 - L2 LINE L2 -476 2838 2698 480 100 0 0 chr12 980440 980520 -143301969 + (TC)n Simple_repeat Simple_repeat 1 80 0 261 0 0 0 chr12 980520 980549 -143301940 + (TG)n Simple_repeat Simple_repeat 2 30 0 513 211 0 37 chr12 980643 980752 -143301737 - MER3 DNA MER1_type -2 207 103 438 233 78 0 chr12 980855 980958 -143301531 - MER3 DNA MER1_type -98 111 1 1174 153 74 114 chr12 981253 981423 -143301066 - Charlie5 DNA MER1_type -1 2623 2448 1016 90 0 15 chr12 981423 981556 -143300933 - FLAM_C SINE Alu -2 131 1 1174 153 74 114 chr12 981556 981790 -143300699 - Charlie5 DNA MER1_type -176 2448 2235 621 159 32 56 chr12 981793 981919 -143300570 - Charlie5 DNA MER1_type -2489 123 1 1987 113 0 7 chr12 982157 982432 -143300057 - AluSx SINE Alu -15 297 25 236 268 99 0 chr12 982693 982764 -143299725 + MER117 DNA MER1_type 15 92 -105 1783 148 19 42 chr12 982839 983149 -143299340 - AluJb SINE Alu -9 303 1 1837 145 13 43 chr12 983295 983598 -143298891 + AluSx SINE Alu 1 294 -18 2051 92 60 0 chr12 984115 984397 -143298092 - AluSc SINE Alu -10 299 1 237 143 54 54 chr12 984448 984504 -143297985 - MER46C DNA MER2_type -46 292 237 222 116 0 0 chr12 985362 985405 -143297084 + (TCTG)n Simple_repeat Simple_repeat 2 44 0 1282 180 78 35 chr12 985407 985662 -143296827 - AluJo SINE Alu -44 268 3 1922 165 0 0 chr12 985816 986119 -143296370 - AluSx SINE Alu -9 303 1 2236 126 7 0 chr12 986397 986707 -143295782 - AluSx SINE Alu 0 312 1 1852 150 41 0 chr12 986709 987002 -143295487 - AluSx SINE Alu -7 305 1 497 233 89 47 chr12 987048 987284 -143295205 - L1MC/D LINE L1 -1989 5819 5574 2213 109 0 25 chr12 988274 988594 -143293895 - AluSx SINE Alu 0 312 1 2322 109 0 0 chr12 988638 988940 -143293549 - AluSx SINE Alu -10 302 1 2235 112 0 3 chr12 989139 989442 -143293047 - AluSx SINE Alu -10 302 1 2075 104 13 41 chr12 989842 990158 -143292331 - AluSx SINE Alu -5 307 1 326 347 132 12 chr12 990363 990768 -143291721 - L2 LINE L2 -14 3258 2773 1728 180 0 3 chr12 990779 991068 -143291421 - AluJb SINE Alu -24 288 1 962 213 53 9 chr12 991069 991294 -143291195 - Charlie1 DNA MER1_type -2522 239 5 1467 159 3 123 chr12 991357 991697 -143290792 - AluJo SINE Alu -13 299 1 1776 197 185 25 chr12 991762 991818 -143290671 - MLT1F1 LTR MaLR -8 559 513 2100 131 0 0 chr12 991818 992126 -143290363 + AluSx SINE Alu 1 308 0 1776 197 185 25 chr12 992126 992550 -143289939 - MLT1F1 LTR MaLR -54 513 1 2342 91 3 0 chr12 992852 993148 -143289341 - AluSg1 SINE Alu -12 297 1 1650 174 13 29 chr12 993411 993544 -143288945 + AluJb SINE Alu 1 135 -177 2504 50 0 7 chr12 993544 993842 -143288647 + AluY SINE Alu 1 296 -15 207 0 0 0 chr12 993845 993868 -143288621 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 1650 174 13 29 chr12 993868 994041 -143288448 + AluJb SINE Alu 137 306 -6 2327 71 51 0 chr12 994799 995095 -143287394 - AluY SINE Alu 0 311 1 881 205 49 0 chr12 995474 995679 -143286810 - Charlie1 DNA MER1_type 0 2761 2547 2204 106 7 3 chr12 995695 995996 -143286493 - AluSq SINE Alu -11 302 1 1149 130 0 0 chr12 996377 996538 -143285951 - AluSx SINE Alu -151 161 1 2039 105 0 7 chr12 996549 996826 -143285663 - AluY SINE Alu -36 275 1 2068 120 33 0 chr12 996828 997127 -143285362 - AluSq SINE Alu -4 309 1 25 0 0 0 chr12 997130 997155 -143285334 + AT_rich Low_complexity Low_complexity 1 25 0 2280 113 0 3 chr12 997523 997832 -143284657 - AluSg SINE Alu -2 308 1 758 271 123 39 chr12 997969 998327 -143284162 + MER20B DNA MER1_type 44 431 -352 944 183 74 26 chr12 998369 998598 -143283891 + MER20B DNA MER1_type 544 783 0 420 306 50 6 chr12 998617 998777 -143283712 + MIR3 SINE MIR 37 203 -5 189 310 55 35 chr12 998956 999101 -143283388 + MIR SINE MIR 106 253 -9 22 0 0 0 chr12 999627 999649 -143282840 + AT_rich Low_complexity Low_complexity 1 22 0 408 286 95 14 chr12 999997 1000144 -143282345 - MIR SINE MIR -38 224 66 22 35 0 0 chr12 1000221 1000250 -143282239 + AT_rich Low_complexity Low_complexity 1 29 0 1172 171 101 19 chr12 1000852 1001109 -143281380 + MER58B DNA MER1_type 53 330 -11 663 258 154 0 chr12 1001140 1001361 -143281128 - MIR SINE MIR 0 262 8 848 156 10 116 chr12 1003844 1004043 -143278446 - MER5B DNA MER1_type 0 178 1 253 229 0 16 chr12 1004043 1004097 -143278392 - MER117 DNA MER1_type -139 58 4 2377 71 34 0 chr12 1004237 1004532 -143277957 - AluSq SINE Alu -8 305 1 383 229 95 17 chr12 1004925 1005038 -143277451 - MER5A DNA MER1_type -14 164 43 2049 81 0 4 chr12 1005242 1005503 -143276986 + AluSc SINE Alu 30 289 -20 532 261 75 25 chr12 1005636 1005797 -143276692 - MER5B DNA MER1_type -3 175 7 1601 160 0 97 chr12 1005897 1006228 -143276261 + AluJb SINE Alu 1 299 -3 1042 144 86 6 chr12 1006558 1006732 -143275757 - MER5A DNA MER1_type 0 189 2 2245 108 0 0 chr12 1007178 1007475 -143275014 + AluSq SINE Alu 1 297 -16 222 270 0 32 chr12 1009213 1009276 -143273213 - L2 LINE L2 -2 3311 3251 338 184 132 0 chr12 1009461 1009537 -143272952 + FRAM SINE Alu 56 141 -25 216 0 0 0 chr12 1009542 1009566 -143272923 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 2132 139 7 0 chr12 1009660 1009970 -143272519 - AluSx SINE Alu 0 312 1 398 271 177 6 chr12 1010166 1010347 -143272142 + MIR SINE MIR 8 219 -43 989 96 0 22 chr12 1010352 1010515 -143271974 + FLAM_C SINE Alu 1 160 0 21 0 0 0 chr12 1010562 1010583 -143271906 + AT_rich Low_complexity Low_complexity 1 21 0 2156 179 36 116 chr12 1010781 1011446 -143271043 - LTR9 LTR ERV1 0 612 1 1699 149 64 14 chr12 1011620 1011916 -143270573 - AluSx SINE Alu -1 311 1 2257 117 0 0 chr12 1012076 1012384 -143270105 - AluSc SINE Alu -1 308 1 9138 141 9 96 chr12 1012454 1013280 -143269209 - L1M LINE L1 -837 5309 4413 829 186 0 14 chr12 1013280 1013425 -143269064 - FRAM SINE Alu -12 164 22 9138 141 9 96 chr12 1013425 1014535 -143267954 - L1M LINE L1 -1733 4413 3444 2411 70 6 70 chr12 1014535 1014666 -143267823 - THE1A LTR MaLR 0 355 217 3154 43 0 0 chr12 1014666 1015038 -143267451 - L1PA3 LINE L1 0 6155 5784 2411 70 6 70 chr12 1015038 1015215 -143267274 - THE1A LTR MaLR -138 217 70 2472 60 3 10 chr12 1015215 1015517 -143266972 - AluY SINE Alu -11 300 1 2411 70 6 70 chr12 1015517 1015562 -143266927 - THE1A LTR MaLR -285 70 24 1093 150 123 0 chr12 1015578 1015798 -143266691 - L1 LINE L1 -2698 4150 3904 1695 164 3 24 chr12 1015805 1016098 -143266391 + AluSx SINE Alu 1 287 -25 261 246 0 0 chr12 1016192 1016253 -143266236 + CT-rich Low_complexity Low_complexity 2 62 0 968 181 39 0 chr12 1016255 1016460 -143266029 - L1 LINE L1 -2983 3865 3653 2377 79 26 0 chr12 1016469 1016772 -143265717 - AluY SINE Alu 0 311 1 817 138 0 48 chr12 1016772 1016907 -143265582 - FLAM_C SINE Alu -177 135 6 2737 204 70 5 chr12 1016914 1017557 -143264932 - L1 LINE L1 -3186 3662 2978 1178 121 0 29 chr12 1017557 1017731 -143264758 - AluSq SINE Alu -16 297 129 210 91 0 0 chr12 1017731 1017764 -143264725 + (TATG)n Simple_repeat Simple_repeat 2 34 0 2033 128 0 3 chr12 1017768 1018056 -143264433 - AluSx SINE Alu -25 287 1 4511 152 54 151 chr12 1018057 1018715 -143263774 - L1 LINE L1 -3862 2986 2265 687 176 37 7 chr12 1018715 1018851 -143263638 - FAM SINE Alu -11 174 35 4511 152 54 151 chr12 1018851 1018901 -143263588 - L1 LINE L1 -4583 2265 2212 1452 187 28 21 chr12 1018901 1019185 -143263304 - AluJo SINE Alu -24 288 3 4511 152 54 151 chr12 1019185 1019483 -143263006 - L1 LINE L1 -4636 2212 1886 2476 99 0 0 chr12 1019483 1019795 -143262694 - AluSx SINE Alu 0 312 1 4511 152 54 151 chr12 1019795 1019975 -143262514 - L1 LINE L1 -4962 1886 1845 372 22 0 0 chr12 1019975 1020020 -143262469 + (TG)n Simple_repeat Simple_repeat 2 46 0 4511 152 54 151 chr12 1020020 1020302 -143262187 - L1 LINE L1 -5003 1845 1537 1963 194 11 3 chr12 1020302 1020678 -143261811 + L1MB5 LINE L1 5788 6166 -8 2319 110 0 0 chr12 1021049 1021349 -143261140 + AluSx SINE Alu 1 300 -12 1158 161 0 0 chr12 1021434 1021602 -143260887 - AluJo SINE Alu -144 168 1 2380 86 7 0 chr12 1022421 1022723 -143259766 - AluSg SINE Alu -5 305 2 290 286 51 51 chr12 1023998 1024085 -143258404 + L1MB8 LINE L1 5710 5796 -382 998 232 100 16 chr12 1024085 1024395 -143258094 - MER46C DNA MER2_type 0 338 3 290 286 51 51 chr12 1024395 1024562 -143257927 + L1MB8 LINE L1 5795 5964 -214 1781 153 58 7 chr12 1024785 1025080 -143257409 - AluJo SINE Alu -2 310 1 242 239 53 35 chr12 1025178 1025197 -143257292 - L1MA10 LINE L1 -1 6333 6315 2631 185 98 102 chr12 1025197 1025298 -143257191 - L1ME2 LINE L1 -10 6154 6054 238 128 0 0 chr12 1025298 1025337 -143257152 - MER3 DNA MER1_type -160 49 11 2631 185 98 102 chr12 1025337 1026244 -143256245 - L1ME2 LINE L1 -110 6054 5129 2332 107 0 0 chr12 1026313 1026613 -143255876 + AluSx SINE Alu 1 300 -12 2112 130 0 0 chr12 1027188 1027487 -143255002 - AluSx SINE Alu -13 299 1 694 126 0 0 chr12 1027515 1027610 -143254879 + AluY SINE Alu 2 96 -222 207 162 0 0 chr12 1027733 1027770 -143254719 + G-rich Low_complexity Low_complexity 2 38 0 2123 120 23 0 chr12 1027776 1028077 -143254412 + AluSx SINE Alu 3 310 -2 560 185 9 9 chr12 1028363 1028471 -143254018 + MLT1C LTR MaLR 360 467 0 412 298 129 28 chr12 1028564 1029083 -143253406 - L1ME LINE L1 -442 5720 5152 2143 109 0 7 chr12 1029095 1029379 -143253110 + AluSx SINE Alu 1 282 -30 359 288 61 102 chr12 1030118 1030208 -143252281 + MLT1L LTR MaLR 1 93 -522 2264 111 3 3 chr12 1030208 1030515 -143251974 - AluSg SINE Alu -1 309 3 1667 83 0 9 chr12 1030518 1030734 -143251755 - AluSg/x SINE Alu -6 304 91 359 288 61 102 chr12 1030734 1030903 -143251586 + MLT1L LTR MaLR 95 253 -362 627 245 43 0 chr12 1031034 1031173 -143251316 + MER45A DNA AcHobo 34 178 0 295 295 76 0 chr12 1031190 1031295 -143251194 + MLT1L LTR MaLR 493 605 -10 2299 95 7 3 chr12 1031296 1031592 -143250897 - AluSq SINE Alu -16 297 1 2461 82 0 25 chr12 1031921 1032239 -143250250 + AluSq SINE Alu 1 310 -3 1925 157 0 13 chr12 1032253 1032565 -143249924 + AluJb SINE Alu 5 312 0 565 240 84 71 chr12 1032660 1032962 -143249527 - MLT1G1 LTR MaLR -64 531 146 2276 102 0 0 chr12 1032962 1033257 -143249232 - AluSq SINE Alu -14 299 5 565 240 84 71 chr12 1033257 1033405 -143249084 - MLT1G1 LTR MaLR -449 146 1 362 297 31 0 chr12 1033874 1034002 -143248487 - MIR SINE MIR -45 217 86 397 298 18 0 chr12 1034073 1034187 -143248302 - L2 LINE L2 -1 3312 3197 1384 185 52 55 chr12 1034319 1034686 -143247803 - MER93b LTR ERV1 -7 366 1 190 219 0 0 chr12 1034688 1034729 -143247760 - L2 LINE L2 -320 2952 2912 1236 281 113 71 chr12 1034871 1035239 -143247250 - L2 LINE L2 -573 2741 2390 1578 150 29 33 chr12 1035239 1035512 -143246977 - AluJo SINE Alu -40 272 1 1236 281 113 71 chr12 1035512 1035781 -143246708 - L2 LINE L2 -924 2390 2134 2425 64 27 0 chr12 1035781 1036078 -143246411 + AluSx SINE Alu 1 305 -7 1236 281 113 71 chr12 1036078 1036115 -143246374 - L2 LINE L2 -1180 2134 2100 1388 202 114 52 chr12 1036115 1036321 -143246168 + MLT1C LTR MaLR 1 193 -274 1828 167 0 16 chr12 1036321 1036626 -143245863 + AluSx SINE Alu 1 300 -12 1388 202 114 52 chr12 1036626 1036859 -143245630 + MLT1C LTR MaLR 193 467 0 1236 281 113 71 chr12 1036859 1037014 -143245475 - L2 LINE L2 -1214 2100 1875 2451 64 3 26 chr12 1037080 1037392 -143245097 - AluY SINE Alu -6 305 1 264 59 0 0 chr12 1037439 1037473 -143245016 + (TTTA)n Simple_repeat Simple_repeat 2 35 0 1328 181 3 122 chr12 1037476 1037796 -143244693 - AluJb SINE Alu -19 283 2 548 251 54 35 chr12 1038045 1038248 -143244241 - L2 LINE L2 -2 3311 3105 26 74 0 0 chr12 1038371 1038425 -143244064 + AT_rich Low_complexity Low_complexity 1 54 0 711 241 140 26 chr12 1038570 1039031 -143243458 - L2 LINE L2 -190 3123 2629 1852 131 0 0 chr12 1039032 1039284 -143243205 + AluSx SINE Alu 2 253 -59 1467 196 11 0 chr12 1039355 1039621 -143242868 - AluJo SINE Alu -43 269 1 206 121 0 0 chr12 1039693 1039726 -143242763 + (CCTG)n Simple_repeat Simple_repeat 2 34 0 2234 94 3 0 chr12 1039734 1040022 -143242467 - AluSg SINE Alu -21 289 1 497 206 142 179 chr12 1040248 1040439 -143242050 + MLT1J LTR MaLR 12 209 -302 2013 138 3 3 chr12 1040439 1040729 -143241760 - AluSg SINE Alu -20 290 1 1652 149 46 11 chr12 1040730 1041012 -143241477 - AluJo SINE Alu -20 292 1 497 206 142 179 chr12 1041012 1041303 -143241186 + MLT1J LTR MaLR 208 478 -33 213 271 51 0 chr12 1041442 1041501 -143240988 - L2 LINE L2 -53 3219 3158 2093 141 0 10 chr12 1041844 1042142 -143240347 + AluSx SINE Alu 3 297 -15 839 179 28 0 chr12 1042374 1042519 -143239970 - AluJb SINE Alu -32 280 132 733 176 0 0 chr12 1042533 1042658 -143239831 + AluSc SINE Alu 133 257 -52 414 160 27 0 chr12 1042653 1042728 -143239761 - BC200 scRNA scRNA -123 77 1 * 349 221 0 32 chr12 1042728 1042823 -143239666 - L1ME3A LINE L1 -230 5940 5849 2735 235 20 32 chr12 1042836 1043518 -143238971 + L1M4 LINE L1 9 682 -5860 437 248 111 0 chr12 1043523 1043640 -143238849 + L2 LINE L2 3183 3312 -1 2068 139 21 6 chr12 1043670 1044007 -143238482 - MER2 DNA MER2_type -1 343 2 22 80 0 0 chr12 1044152 1044202 -143238287 + AT_rich Low_complexity Low_complexity 1 50 0 2076 117 3 20 chr12 1044250 1044550 -143237939 + AluJo SINE Alu 1 295 -17 2101 111 6 38 chr12 1044772 1045087 -143237402 + AluSx SINE Alu 1 305 -7 27 29 0 0 chr12 1046302 1046336 -143236153 + AT_rich Low_complexity Low_complexity 1 34 0 2196 39 8 4 chr12 1046501 1046760 -143235729 - AluY SINE Alu -18 293 34 403 234 145 69 chr12 1046878 1047168 -143235321 - L2 LINE L2 0 3313 3002 2370 104 0 0 chr12 1047361 1047660 -143234829 + AluSq SINE Alu 1 299 -14 2178 202 99 8 chr12 1047949 1048434 -143234055 + MER82 DNA MER2_type 1 529 -124 2193 106 3 10 chr12 1048669 1048980 -143233509 + AluSp SINE Alu 5 313 0 2233 126 0 0 chr12 1048988 1049297 -143233192 + AluSx SINE Alu 3 311 -1 180 0 0 0 chr12 1049450 1049470 -143233019 + (A)n Simple_repeat Simple_repeat 1 20 0 1263 175 5 22 chr12 1049475 1049698 -143232791 - AluJo SINE Alu -30 282 64 229 284 35 35 chr12 1050177 1050318 -143232171 + LTR16C LTR ERVL 320 460 -31 1060 289 84 29 chr12 1050350 1050392 -143232097 + LTR16C LTR ERVL 1 39 -452 2320 97 0 7 chr12 1050392 1050690 -143231799 - AluSx SINE Alu -16 296 1 1060 289 84 29 chr12 1050690 1051063 -143231426 + LTR16C LTR ERVL 39 439 -52 1048 208 128 81 chr12 1051092 1051365 -143231124 + L1MC4 LINE L1 7326 7624 -418 2067 140 3 3 chr12 1051365 1051672 -143230817 + AluSx SINE Alu 1 307 -5 1048 208 128 81 chr12 1051672 1051782 -143230707 + L1MC4 LINE L1 7624 7727 -315 593 170 0 0 chr12 1051800 1051894 -143230595 - AluJb SINE Alu -86 226 133 237 288 93 49 chr12 1051895 1052017 -143230472 + L1MC4 LINE L1 7781 7917 -125 297 0 0 0 chr12 1052017 1052050 -143230439 + (TG)n Simple_repeat Simple_repeat 2 34 0 237 288 93 49 chr12 1052050 1052132 -143230357 + L1MC4 LINE L1 7917 7994 -48 1656 154 46 4 chr12 1052134 1052414 -143230075 - AluJo SINE Alu -20 292 1 2384 94 0 0 chr12 1052761 1053060 -143229429 + AluSg SINE Alu 3 301 -9 2198 68 0 54 chr12 1053281 1053604 -143228885 + AluSc SINE Alu 1 307 0 782 258 9 65 chr12 1053803 1054199 -143228290 + L1ME LINE L1 1182 1692 -4871 * 2640 218 85 22 chr12 1054194 1054288 -143228201 + L1ME LINE L1 4620 4707 -1691 2328 98 0 0 chr12 1054288 1054583 -143227906 - AluSp SINE Alu -18 295 1 2334 105 0 13 chr12 1054588 1054902 -143227587 - AluSq SINE Alu -3 310 1 2640 218 85 22 chr12 1054902 1055432 -143227057 + L1ME LINE L1 4710 5205 -1193 2308 98 0 3 chr12 1055432 1055727 -143226762 + AluSg SINE Alu 1 294 -16 2640 218 85 22 chr12 1055727 1056205 -143226284 + L1ME LINE L1 5205 5803 -595 2103 116 0 20 chr12 1056320 1056614 -143225875 - AluSx SINE Alu -24 288 1 310 277 85 66 chr12 1056618 1056889 -143225600 - L1M4 LINE L1 -867 5279 5004 1860 170 7 0 chr12 1056900 1057200 -143225289 + AluSx SINE Alu 2 303 -9 1583 158 37 30 chr12 1057206 1057504 -143224985 + AluJb SINE Alu 1 300 -12 230 284 45 0 chr12 1057504 1057571 -143224918 + L1ME LINE L1 5832 5901 -501 180 0 0 0 chr12 1057574 1057594 -143224895 + (A)n Simple_repeat Simple_repeat 1 20 0 498 125 38 0 chr12 1057726 1057806 -143224683 - AluS SINE Alu -5 305 223 2436 90 0 0 chr12 1058034 1058333 -143224156 + AluSq SINE Alu 1 299 -14 1238 48 0 0 chr12 1058503 1058650 -143223839 + AluY SINE Alu 158 304 -7 1121 272 108 23 chr12 1058658 1058932 -143223557 - L2 LINE L2 -381 2933 2615 2541 57 0 0 chr12 1058932 1059230 -143223259 - AluY SINE Alu -13 298 1 1121 272 108 23 chr12 1059230 1059345 -143223144 - L2 LINE L2 -699 2615 2511 2055 132 0 3 chr12 1059345 1059640 -143222849 - AluJb SINE Alu -18 294 1 1125 174 23 5 chr12 1059641 1059859 -143222630 - AluJo SINE Alu -5 307 86 795 265 31 0 chr12 1059860 1060056 -143222433 - L2 LINE L2 -796 2518 2317 326 183 50 0 chr12 1060113 1060173 -143222316 + LTR16C LTR ERVL 55 117 -374 256 262 39 19 chr12 1060419 1060522 -143221967 + MLT1L LTR MaLR 507 611 -4 494 236 180 60 chr12 1060538 1060771 -143221718 - MIR SINE MIR 0 262 2 1601 124 93 31 chr12 1060791 1061082 -143221407 + MER44D DNA MER2_type 1 579 -30 718 239 90 34 chr12 1061490 1061867 -143220622 + L2 LINE L2 1717 2207 -1107 1489 225 202 36 chr12 1061874 1061899 -143220590 + MLT1H1 LTR MaLR 1 21 -534 2321 93 0 7 chr12 1061899 1062190 -143220299 + AluSg SINE Alu 1 289 -21 1489 225 202 36 chr12 1062190 1062671 -143219818 + MLT1H1 LTR MaLR 21 555 0 303 242 126 11 chr12 1062671 1062766 -143219723 + L2 LINE L2 2209 2314 -1000 581 181 0 0 chr12 1062771 1062865 -143219624 - LTR16C LTR ERVL 0 491 398 * 978 270 78 82 chr12 1062860 1063507 -143218982 - MER50 LTR ERV1 -23 711 1 * 990 250 49 27 chr12 1063507 1063870 -143218619 - LTR16C LTR ERVL -84 407 1 272 184 0 0 chr12 1063892 1063941 -143218548 - L1MC4 LINE L1 -472 7570 7522 428 218 30 20 chr12 1063951 1064052 -143218437 + LTR40a LTR ERVL 4 105 -414 1197 50 0 69 chr12 1064054 1064214 -143218275 - AluSg SINE Alu -161 149 1 225 286 163 0 chr12 1064245 1064343 -143218146 - L1MC4a LINE L1 -1480 6328 6215 1438 140 5 14 chr12 1064380 1064602 -143217887 + AluSx SINE Alu 1 220 -92 1082 83 28 14 chr12 1064596 1064740 -143217749 + AluSg/x SINE Alu 144 289 -21 * 389 70 18 0 chr12 1064741 1064798 -143217691 + (TAGA)n Simple_repeat Simple_repeat 1 58 0 1428 161 33 140 chr12 1064907 1065019 -143217470 + MLT1B LTR MaLR 1 123 -267 1956 147 7 3 chr12 1065019 1065318 -143217171 + AluSx SINE Alu 1 300 -12 1428 161 33 140 chr12 1065318 1065626 -143216863 + MLT1B LTR MaLR 123 376 -14 1998 70 0 0 chr12 1065627 1065868 -143216621 + AluY SINE Alu 1 241 -70 1320 118 5 5 chr12 1065868 1066094 -143216395 + AluSg/x SINE Alu 101 326 0 783 233 0 0 chr12 1066100 1066246 -143216243 - MLT1B-int LTR MaLR -128 1607 1462 2389 89 3 0 chr12 1066450 1066752 -143215737 - AluSq SINE Alu -10 303 1 1144 117 25 0 chr12 1066754 1066916 -143215573 - AluSg/x SINE Alu -6 304 139 381 64 0 0 chr12 1066954 1067001 -143215488 - MLT1B LTR MaLR 0 390 344 400 107 36 0 chr12 1067009 1067065 -143215424 - MLT1C LTR MaLR -409 58 1 1291 181 17 181 chr12 1067066 1067206 -143215283 - MLT1C-int LTR MaLR -1 1370 1209 1794 163 0 7 chr12 1067206 1067494 -143214995 + AluJb SINE Alu 1 286 -26 1291 181 17 181 chr12 1067494 1067762 -143214727 - MLT1C-int LTR MaLR -162 1209 1029 1093 123 0 25 chr12 1067765 1067967 -143214522 + AluSg/x SINE Alu 134 331 0 370 313 0 18 chr12 1067967 1068110 -143214379 - MLT1B-int LTR MaLR -334 1037 956 282 337 0 0 chr12 1068185 1068286 -143214203 - MLT1B-int LTR MaLR -958 777 677 1610 191 56 7 chr12 1068342 1068811 -143213678 - MLT1B-int LTR MaLR -484 887 238 940 117 5 143 chr12 1068814 1069010 -143213479 - AluJb SINE Alu -10 302 134 2128 131 0 0 chr12 1069010 1069307 -143213182 - AluSx SINE Alu -15 297 1 645 197 8 8 chr12 1069307 1069434 -143213055 - MLT1B-int LTR MaLR -1244 127 1 1559 193 111 14 chr12 1069437 1069568 -143212921 - MLT1B LTR MaLR -3 387 270 2328 94 7 10 chr12 1069568 1069877 -143212612 - AluSq SINE Alu -5 308 1 1559 193 111 14 chr12 1069877 1070098 -143212391 - MLT1B LTR MaLR -120 270 1 2166 148 15 38 chr12 1070128 1070358 -143212131 - L1MB3 LINE L1 -1 6182 5963 2135 107 3 13 chr12 1070358 1070657 -143211832 - AluSq SINE Alu -17 296 1 2166 148 15 38 chr12 1070657 1070818 -143211671 - L1MB3 LINE L1 -220 5963 5800 2481 61 0 3 chr12 1070826 1071122 -143211367 - AluY SINE Alu -16 295 1 1176 83 0 0 chr12 1071122 1071266 -143211223 - AluY SINE Alu -167 144 1 1253 175 22 11 chr12 1071270 1071303 -143211186 - L1MB3 LINE L1 -978 5168 5137 1651 191 0 13 chr12 1071303 1071602 -143210887 - AluJo SINE Alu -17 295 1 1253 175 22 11 chr12 1071602 1071836 -143210653 - L1MB3 LINE L1 -1009 5137 4898 180 0 0 0 chr12 1071836 1071856 -143210633 + (TTTA)n Simple_repeat Simple_repeat 2 21 0 1459 133 18 0 chr12 1071870 1072096 -143210393 - AluSq SINE Alu -83 230 1 2399 88 3 0 chr12 1072096 1072391 -143210098 - AluSp SINE Alu -17 296 1 812 169 0 0 chr12 1072403 1072521 -143209968 - FLAM_C SINE Alu -25 118 1 1727 164 10 10 chr12 1072524 1072817 -143209672 - AluJo SINE Alu -14 298 6 310 284 55 0 chr12 1073011 1073120 -143209369 - HAL1 LINE L1 -701 1806 1692 2248 98 13 13 chr12 1073121 1073426 -143209063 - AluSq SINE Alu -8 305 1 397 226 226 8 chr12 1073427 1073684 -143208805 - HAL1 LINE L1 -1010 1497 1185 1897 179 0 3 chr12 1073707 1074019 -143208470 - AluJb SINE Alu -1 311 1 353 136 0 34 chr12 1074022 1074081 -143208408 - Alu SINE Alu -2 300 244 332 163 0 0 chr12 1074078 1074127 -143208362 - Alu SINE Alu -251 49 1 * 928 241 0 19 chr12 1074130 1074346 -143208143 - AluJb SINE Alu -14 298 87 266 297 280 3 chr12 1074348 1074641 -143207848 - HAL1 LINE L1 -1357 1150 777 2465 170 28 35 chr12 1074641 1075101 -143207388 - MSTB2 LTR MaLR 0 457 1 293 329 13 0 chr12 1075570 1075649 -143206840 - HAL1 LINE L1 -2427 80 1 374 303 116 7 chr12 1075827 1075982 -143206507 - MIR3 SINE MIR -36 172 1 264 30 0 0 chr12 1077092 1077125 -143205364 + (TG)n Simple_repeat Simple_repeat 1 33 0 450 254 134 106 chr12 1077240 1077895 -143204594 - L1M2 LINE L1 -5519 1330 696 1289 126 0 6 chr12 1080195 1080370 -143202119 - AluSx SINE Alu -138 174 1 1881 200 28 45 chr12 1080382 1080556 -143201933 + LTR40c LTR ERVL 35 210 -255 2422 48 31 0 chr12 1080556 1080845 -143201644 + AluY SINE Alu 1 298 -13 1881 200 28 45 chr12 1080845 1081095 -143201394 + LTR40c LTR ERVL 210 452 -13 767 205 0 0 chr12 1081228 1081345 -143201144 - FLAM_C SINE Alu -25 118 2 320 163 50 75 chr12 1081346 1081426 -143201063 + MER112 DNA MER1_type 38 115 -145 244 233 17 0 chr12 1081426 1081486 -143201003 - MLT1F1 LTR MaLR -7 560 500 345 271 0 0 chr12 1081572 1081642 -143200847 + MER112 DNA MER1_type 186 255 -5 2309 75 56 31 chr12 1081657 1081795 -143200694 + THE1C LTR MaLR 8 141 -234 1472 131 186 8 chr12 1081795 1082047 -143200442 - AluSg1 SINE Alu -12 297 1 2309 75 56 31 chr12 1082047 1082267 -143200222 + THE1C LTR MaLR 141 375 0 261 300 104 86 chr12 1082275 1082939 -143199550 - L2 LINE L2 -661 2653 1978 2011 140 3 0 chr12 1083228 1083528 -143198961 + AluJb SINE Alu 1 301 -11 180 152 0 0 chr12 1083959 1083992 -143198497 + A-rich Low_complexity Low_complexity 1 33 0 1004 149 11 6 chr12 1084041 1084216 -143198273 - MER2 DNA MER2_type -137 208 33 444 312 48 16 chr12 1084471 1084782 -143197707 - L1M4 LINE L1 -861 5285 4965 2311 132 28 28 chr12 1084858 1084924 -143197565 - THE1B LTR MaLR 0 364 299 2071 130 10 0 chr12 1084924 1085225 -143197264 - AluSq SINE Alu -9 304 1 2311 132 28 28 chr12 1085225 1085522 -143196967 - THE1B LTR MaLR -64 300 1 597 231 124 0 chr12 1085715 1085901 -143196588 - MER46C DNA MER2_type -129 209 1 471 247 81 118 chr12 1085925 1086508 -143195981 - L1M4 LINE L1 -1429 4717 4157 851 182 0 0 chr12 1086508 1086640 -143195849 - FLAM_C SINE Alu 0 133 2 229 243 0 29 chr12 1087926 1087996 -143194493 + T-rich Low_complexity Low_complexity 1 68 0 2086 98 35 0 chr12 1088202 1088489 -143194000 + AluSx SINE Alu 1 297 -15 2354 92 0 0 chr12 1088874 1089169 -143193320 - AluSx SINE Alu -9 303 9 2119 144 28 51 chr12 1089488 1089570 -143192919 + MER7A DNA MER2_type 2 84 -2954 1581 167 30 17 chr12 1089570 1089870 -143192619 + AluJb SINE Alu 1 304 -8 2119 144 28 51 chr12 1089870 1090142 -143192347 + MER7A DNA MER2_type 84 346 0 521 279 57 13 chr12 1090971 1091129 -143191360 + MER5A DNA MER1_type 1 165 -24 2206 96 3 20 chr12 1091174 1091476 -143191013 - AluSg SINE Alu -11 299 3 214 259 19 0 chr12 1091734 1091788 -143190701 + MER5A DNA MER1_type 135 189 0 2013 142 3 19 chr12 1091994 1092169 -143190320 - AluSx SINE Alu -6 306 137 2370 91 0 3 chr12 1092169 1092465 -143190024 - AluY SINE Alu -16 295 1 2013 142 3 19 chr12 1092465 1092600 -143189889 - AluSx SINE Alu -175 137 1 1087 131 12 0 chr12 1092600 1092760 -143189729 - AluSg/x SINE Alu -17 293 132 2276 94 10 3 chr12 1092760 1093059 -143189430 - AluSx SINE Alu -11 301 1 829 211 0 0 chr12 1093424 1093557 -143188932 + FLAM_A SINE Alu 1 133 0 26 30 0 0 chr12 1093557 1093590 -143188899 + AT_rich Low_complexity Low_complexity 1 33 0 2521 58 0 0 chr12 1094770 1095064 -143187425 + AluY SINE Alu 1 294 -17 2254 103 0 3 chr12 1095504 1095805 -143186684 - AluSq SINE Alu -13 300 1 295 233 217 16 chr12 1096639 1096768 -143185721 + L3 LINE CR1 1134 1288 -289 2367 71 0 7 chr12 1096892 1097189 -143185300 + AluY SINE Alu 1 295 -16 198 0 0 0 chr12 1097193 1097215 -143185274 + (TTAA)n Simple_repeat Simple_repeat 1 22 0 505 269 38 19 chr12 1097215 1097375 -143185114 + AluJb SINE Alu 130 292 -20 985 79 67 79 chr12 1098837 1099015 -143183474 - Tigger2a DNA MER2_type -57 387 212 1907 114 0 0 chr12 1099018 1099273 -143183216 + AluSc SINE Alu 3 257 -52 242 145 29 87 chr12 1099285 1099354 -143183135 + AluSc SINE Alu 237 301 -1 * 1217 167 17 43 chr12 1099332 1099566 -143182923 - Tigger2a DNA MER2_type -206 228 1 2210 108 0 0 chr12 1099988 1100283 -143182206 - AluSg SINE Alu 0 310 16 395 332 79 8 chr12 1102141 1102394 -143180095 + L1MB1 LINE L1 5098 5368 -778 342 293 126 24 chr12 1103532 1103699 -143178790 + L1MB1 LINE L1 5575 5758 -2050 2081 155 71 3 chr12 1103729 1104083 -143178406 - L1MB3 LINE L1 -1 6182 5805 2325 78 3 0 chr12 1104096 1104390 -143178099 + THE1A LTR MaLR 1 295 -60 959 122 0 0 chr12 1104387 1104518 -143177971 + THE1A LTR MaLR 223 353 -2 * 397 304 40 16 chr12 1104582 1104707 -143177782 - MIR SINE MIR -61 147 20 460 224 91 91 chr12 1105141 1105246 -143177243 + MIR SINE MIR 53 157 -105 1183 179 52 9 chr12 1105246 1105475 -143177014 + L1MB1 LINE L1 5929 6167 -1 460 224 91 91 chr12 1105475 1105579 -143176910 + MIR SINE MIR 156 262 0 2099 111 4 0 chr12 1105628 1105931 -143176558 - AluSg SINE Alu 0 304 1 1017 70 39 0 chr12 1105931 1106059 -143176430 - AluSg SINE Alu -177 133 1 2221 114 3 10 chr12 1106091 1106397 -143176092 - AluSq SINE Alu -9 304 1 22 0 0 0 chr12 1108020 1108042 -143174447 + AT_rich Low_complexity Low_complexity 1 22 0 1688 149 0 55 chr12 1108278 1108587 -143173902 - AluJo SINE Alu 0 312 21 180 111 0 0 chr12 1108608 1108635 -143173854 + (TTG)n Simple_repeat Simple_repeat 1 27 0 186 133 0 0 chr12 1109077 1109107 -143173382 + (TTA)n Simple_repeat Simple_repeat 2 31 0 180 111 0 0 chr12 1110860 1110887 -143171602 + (TTA)n Simple_repeat Simple_repeat 2 28 0 588 95 0 0 chr12 1113073 1113157 -143169332 + (TTA)n Simple_repeat Simple_repeat 2 85 0 1971 108 41 0 chr12 1113160 1113429 -143169060 - AluSx SINE Alu -32 280 1 246 355 127 23 chr12 1113565 1113785 -143168704 - L2 LINE L2 -260 3053 2811 423 289 90 25 chr12 1113910 1114111 -143168378 - L2 LINE L2 -540 2774 2561 2415 77 0 0 chr12 1114239 1114537 -143167952 - AluSg SINE Alu -12 298 1 735 303 47 7 chr12 1114540 1114837 -143167652 + HsTC2 DNA Tc2 5 313 -1585 647 193 30 86 chr12 1114844 1114919 -143167570 + HsTC2 DNA Tc2 1707 1785 -113 1936 146 17 0 chr12 1114919 1115214 -143167275 + AluSx SINE Alu 1 300 -12 647 193 30 86 chr12 1115214 1115335 -143167154 + HsTC2 DNA Tc2 1785 1892 -6 510 157 0 0 chr12 1116105 1116226 -143166263 + (TA)n Simple_repeat Simple_repeat 2 122 0 2209 115 0 0 chr12 1116263 1116559 -143165930 - AluSx SINE Alu -16 296 1 2088 135 7 3 chr12 1116647 1116950 -143165539 - AluSx SINE Alu -8 304 1 1868 122 0 0 chr12 1117391 1117637 -143164852 + AluSx SINE Alu 4 249 -63 1855 158 17 7 chr12 1118171 1118468 -143164021 - AluJb SINE Alu -12 300 1 367 312 39 44 chr12 1118941 1119146 -143163343 - L1ME3A LINE L1 -5 6165 5962 812 291 91 65 chr12 1119386 1119942 -143162547 - L1MEc LINE L1 -5485 911 326 2215 106 0 13 chr12 1119942 1120253 -143162236 - AluSx SINE Alu -3 309 3 812 291 91 65 chr12 1120253 1120507 -143161982 - L1MEc LINE L1 -6070 326 80 1492 289 116 42 chr12 1120535 1121414 -143161075 - L2 LINE L2 -550 2764 1821 29 0 0 0 chr12 1121428 1121457 -143161032 + AT_rich Low_complexity Low_complexity 1 29 0 183 80 0 0 chr12 1121465 1121490 -143160999 + (GGGAGA)n Simple_repeat Simple_repeat 1 25 0 279 273 91 9 chr12 1121574 1121684 -143160805 + Charlie2 DNA MER1_type 94 212 -2650 2324 250 180 11 chr12 1121840 1122076 -143160413 - L2 LINE L2 -1 3312 3117 2405 90 0 6 chr12 1122076 1122388 -143160101 - AluSg SINE Alu 0 310 1 2324 250 180 11 chr12 1122388 1123352 -143159137 - L2 LINE L2 -196 3117 1888 793 304 37 72 chr12 1123490 1123973 -143158516 - LTR67 LTR ERVL -87 470 5 438 301 147 6 chr12 1124068 1124224 -143158265 + MER91A DNA MER1_type 19 196 0 659 250 37 28 chr12 1124836 1125052 -143157437 - L2 LINE L2 -4 3309 3092 526 278 19 44 chr12 1125132 1125402 -143157087 - L1MC5 LINE L1 -48 7913 7651 1222 262 118 19 chr12 1125452 1125936 -143156553 - L2 LINE L2 -363 2951 2420 764 171 0 0 chr12 1125959 1126076 -143156413 - FLAM_C SINE Alu -24 119 3 241 242 81 0 chr12 1126076 1126175 -143156314 - L2 LINE L2 -950 2364 2258 277 184 0 0 chr12 1127297 1127346 -143155143 - Charlie1 DNA MER1_type 0 2761 2713 * 723 126 59 0 chr12 1127335 1127454 -143155035 - Charlie1 DNA MER1_type -865 1896 1771 298 116 58 43 chr12 1127565 1127634 -143154855 + AluSp/q SINE Alu 221 290 -13 1303 111 6 6 chr12 1127668 1127849 -143154640 + AluSx SINE Alu 6 186 -126 2294 94 7 3 chr12 1127903 1128210 -143154279 + AluSq SINE Alu 3 310 -3 1508 166 150 17 chr12 1128352 1128713 -143153776 + L1MB7 LINE L1 5732 6140 -44 1465 125 167 0 chr12 1128714 1128954 -143153535 + AluSg SINE Alu 1 280 -30 1843 137 7 0 chr12 1129003 1129295 -143153194 - AluSx SINE Alu -18 294 1 454 168 0 56 chr12 1129347 1129454 -143153035 - AluJb SINE Alu -7 305 205 2400 60 0 3 chr12 1130586 1130884 -143151605 + AluY SINE Alu 1 297 -14 903 137 0 0 chr12 1130885 1131009 -143151480 - AluJo/FLAM SINE Alu -188 124 1 1030 96 10 96 chr12 1131010 1131219 -143151270 - L1MA7 LINE L1 -122 6169 5979 1081 79 0 0 chr12 1131222 1131348 -143151141 - AluSp SINE Alu -187 126 1 657 163 120 34 chr12 1131349 1131406 -143151083 - L1 LINE L1 -745 5401 5350 1553 180 7 40 chr12 1131406 1131706 -143150783 - AluJo SINE Alu -20 292 3 657 163 120 34 chr12 1131706 1131857 -143150632 - L1 LINE L1 -796 5350 5175 * 816 229 81 34 chr12 1131854 1132177 -143150312 - L1 LINE L1 -2848 3298 2961 1463 180 31 66 chr12 1132244 1132561 -143149928 - AluJo SINE Alu -6 306 1 803 161 0 0 chr12 1132572 1132696 -143149793 - FLAM_A SINE Alu -9 124 1 673 226 48 6 chr12 1132735 1132903 -143149586 + MLT1C LTR MaLR 1 175 -292 1869 138 17 17 chr12 1132907 1133198 -143149291 + AluSq SINE Alu 1 291 -22 254 130 0 19 chr12 1133198 1133252 -143149237 + (GGGAA)n Simple_repeat Simple_repeat 1 53 0 1900 109 4 4 chr12 1133501 1133758 -143148731 - AluSq SINE Alu -56 257 1 276 206 52 0 chr12 1134178 1134270 -143148219 + HsTC2 DNA Tc2 14 1835 -63 2628 34 3 0 chr12 1134483 1134778 -143147711 + AluY SINE Alu 1 296 -15 507 158 18 70 chr12 1135006 1135120 -143147369 + MER3 DNA MER1_type 38 145 -64 316 203 127 17 chr12 1135697 1135815 -143146674 - L1M4 LINE L1 -780 5366 5236 2300 84 0 20 chr12 1136018 1136317 -143146172 + AluSc SINE Alu 3 295 -14 1842 103 58 0 chr12 1136390 1136651 -143145838 + AluSx SINE Alu 11 286 -26 1459 140 17 92 chr12 1136683 1136884 -143145605 - Tigger3(Golem) DNA MER2_type -956 275 101 2130 98 11 0 chr12 1136884 1137160 -143145329 - AluSc SINE Alu -30 279 1 1459 140 17 92 chr12 1137160 1137250 -143145239 - Tigger3(Golem) DNA MER2_type -1130 101 6 1825 156 24 0 chr12 1137294 1137582 -143144907 - AluSg SINE Alu 0 310 16 2126 135 10 0 chr12 1138476 1138772 -143143717 - AluSq SINE Alu -14 299 1 498 125 38 0 chr12 1139000 1139080 -143143409 + AluS SINE Alu 225 307 -5 1008 236 11 15 chr12 1190369 1190640 -143091849 - L1MEc LINE L1 -5509 887 618 698 185 122 70 chr12 1190661 1190796 -143091693 + Charlie1 DNA MER1_type 2472 2599 -162 1897 141 10 36 chr12 1190796 1191102 -143091387 - AluJo SINE Alu -14 298 1 698 185 122 70 chr12 1191102 1191179 -143091310 + Charlie1 DNA MER1_type 2599 2671 -90 2278 100 3 0 chr12 1191179 1191478 -143091011 - AluSp SINE Alu -13 300 1 698 185 122 70 chr12 1191478 1191534 -143090955 + Charlie1 DNA MER1_type 2671 2755 -6 338 176 28 65 chr12 1191845 1191921 -143090568 - L1MEc LINE L1 -5997 208 136 1258 203 128 40 chr12 1191921 1192350 -143090139 + MLT1C LTR MaLR 1 467 0 338 176 28 65 chr12 1192350 1192381 -143090108 - L1MEc LINE L1 -6069 136 105 233 350 75 12 chr12 1192931 1193011 -143089478 + L2 LINE L2 3141 3225 -47 226 393 98 6 chr12 1193001 1193164 -143089325 + L2 LINE L2 2680 2857 -457 * 2371 97 0 0 chr12 1193538 1193847 -143088642 - AluSc SINE Alu 0 309 1 292 306 9 54 chr12 1193850 1193961 -143088528 + MIR SINE MIR 64 169 -93 2331 67 7 10 chr12 1194018 1194315 -143088174 + AluSx SINE Alu 1 296 -16 349 109 77 13 chr12 1194336 1194492 -143087997 + (TA)n Simple_repeat Simple_repeat 1 166 0 248 154 31 15 chr12 1194503 1194568 -143087921 + (TTATA)n Simple_repeat Simple_repeat 4 69 0 344 107 87 17 chr12 1194578 1194869 -143087620 + (TA)n Simple_repeat Simple_repeat 1 311 0 284 294 83 9 chr12 1195306 1195415 -143087074 + MIR SINE MIR 12 128 -134 3055 171 11 11 chr12 1195514 1196064 -143086425 + MER44D DNA MER2_type 1 605 0 1185 140 77 31 chr12 1196790 1197012 -143085477 - MER46A DNA MER2_type -4 232 1 946 175 22 11 chr12 1197156 1197339 -143085150 + MER33 DNA MER1_type 2 186 -138 472 197 228 0 chr12 1197751 1197878 -143084611 + MER5A DNA MER1_type 31 186 -3 299 130 0 0 chr12 1197888 1197934 -143084555 + tRNA-Gln-CAG tRNA tRNA 1 46 -29 1185 259 93 19 chr12 1198796 1199279 -143083210 - L1MC/D LINE L1 -2014 5794 5276 1848 139 0 17 chr12 1199361 1199649 -143082840 - AluSx SINE Alu -24 288 6 25 0 0 0 chr12 1199657 1199682 -143082807 + AT_rich Low_complexity Low_complexity 1 25 0 399 159 0 0 chr12 1199683 1199746 -143082743 - FLAM_A SINE Alu -34 99 37 468 0 0 0 chr12 1199780 1199832 -143082657 + (TG)n Simple_repeat Simple_repeat 2 53 0 676 315 116 35 chr12 1199897 1200526 -143081963 - L1MC/D LINE L1 -1316 4830 4151 6546 152 33 28 chr12 1200709 1201065 -143081424 - L1PB1 LINE L1 -1 6150 5798 345 100 0 0 chr12 1201065 1201115 -143081374 + (TA)n Simple_repeat Simple_repeat 1 50 0 6546 152 33 28 chr12 1201115 1201474 -143081015 - L1PB1 LINE L1 -353 5798 5443 2351 85 0 0 chr12 1201474 1201767 -143080722 - AluSx SINE Alu -19 293 1 6546 152 33 28 chr12 1201767 1203071 -143079418 - L1PB1 LINE L1 -708 5443 4103 4348 43 2 6 chr12 1203071 1203609 -143078880 - L1PA4 LINE L1 0 6155 5620 6546 152 33 28 chr12 1203609 1203852 -143078637 - L1PB1 LINE L1 -2048 4103 3863 914 136 11 87 chr12 1204642 1204826 -143077663 - THE1B LTR MaLR 0 364 195 24 0 0 0 chr12 1205040 1205064 -143077425 + AT_rich Low_complexity Low_complexity 1 24 0 2151 111 0 0 chr12 1205064 1205352 -143077137 - AluSx SINE Alu -24 288 1 27 0 0 0 chr12 1205592 1205619 -143076870 + AT_rich Low_complexity Low_complexity 1 27 0 1902 150 3 3 chr12 1205858 1206144 -143076345 - AluJb SINE Alu -21 291 6 22 0 0 0 chr12 1206936 1206958 -143075531 + AT_rich Low_complexity Low_complexity 1 22 0 2207 218 29 21 chr12 1207049 1207572 -143074917 + L1MC3 LINE L1 7258 7784 -1 2277 102 0 3 chr12 1208367 1208671 -143073818 + AluSq SINE Alu 1 303 -10 1719 130 18 11 chr12 1210387 1210663 -143071826 - L1PB3 LINE L1 -94 6060 5783 360 0 0 0 chr12 1210664 1210704 -143071785 + (TATATG)n Simple_repeat Simple_repeat 1 40 0 230 326 0 0 chr12 1210704 1210790 -143071699 + L1MC4 LINE L1 6615 6700 -1342 252 0 0 0 chr12 1210805 1210833 -143071656 + (CA)n Simple_repeat Simple_repeat 2 29 0 2692 138 77 30 chr12 1210836 1211486 -143071003 + L1P5 LINE L1 4962 5652 -502 1840 142 36 26 chr12 1211486 1211789 -143070700 + AluSx SINE Alu 1 306 -6 2692 138 77 30 chr12 1211789 1211922 -143070567 + L1P5 LINE L1 5652 5777 -377 2322 65 17 3 chr12 1211927 1212221 -143070268 - AluY SINE Alu -13 298 1 34 0 0 0 chr12 1212313 1212347 -143070142 + AT_rich Low_complexity Low_complexity 1 34 0 26 30 0 0 chr12 1212522 1212555 -143069934 + AT_rich Low_complexity Low_complexity 1 33 0 1989 127 7 7 chr12 1212678 1212987 -143069502 - AluSg SINE Alu 0 309 1 330 307 77 29 chr12 1213122 1213455 -143069034 - L1M4 LINE L1 -660 5518 5174 1195 191 4 27 chr12 1213546 1213802 -143068687 - AluJb SINE Alu -9 303 54 230 311 0 0 chr12 1213907 1213981 -143068508 - L1P LINE L1 -1186 4960 4887 562 250 55 0 chr12 1214156 1214284 -143068205 - L2 LINE L2 -1278 2036 1902 261 297 226 13 chr12 1214282 1214437 -143068052 + L3 LINE CR1 1251 1438 -139 * 22 35 0 0 chr12 1214638 1214667 -143067822 + AT_rich Low_complexity Low_complexity 1 29 0 383 295 114 32 chr12 1214727 1214871 -143067618 - HAL1b LINE L1 -523 825 694 2194 81 3 69 chr12 1214871 1215203 -143067286 - AluSp SINE Alu -3 310 1 383 295 114 32 chr12 1215203 1215339 -143067150 - HAL1b LINE L1 -654 694 522 2071 161 3 3 chr12 1215651 1215973 -143066516 - MER1B DNA MER1_type -17 322 1 217 263 70 0 chr12 1216003 1216060 -143066429 - L3 LINE CR1 -267 1310 1250 189 295 16 16 chr12 1216166 1216227 -143066262 - L3 LINE CR1 -691 886 826 217 283 0 0 chr12 1216278 1216338 -143066151 + MIR SINE MIR 92 151 -111 246 358 129 0 chr12 1216567 1216768 -143065721 - L3 LINE CR1 -797 780 554 1660 130 103 4 chr12 1216907 1217169 -143065320 + AluSx SINE Alu 5 292 -20 904 147 0 7 chr12 1217210 1217346 -143065143 - FLAM_C SINE Alu -8 135 1 21 57 0 0 chr12 1218330 1218365 -143064124 + AT_rich Low_complexity Low_complexity 1 35 0 22 0 0 0 chr12 1219157 1219179 -143063310 + AT_rich Low_complexity Low_complexity 1 22 0 424 233 60 0 chr12 1219926 1220042 -143062447 - MLT1G LTR MaLR -11 579 457 2087 149 3 0 chr12 1220157 1220465 -143062024 - AluSx SINE Alu -3 309 1 327 256 97 67 chr12 1220486 1220681 -143061808 - MLT1G LTR MaLR -303 287 87 2266 64 7 0 chr12 1220682 1221090 -143061399 - AluY SINE Alu 0 410 1 312 140 0 0 chr12 1221175 1221225 -143061264 - MLT1G LTR MaLR -533 62 13 2311 46 0 87 chr12 1221759 1222082 -143060407 - AluY SINE Alu -15 296 2 870 201 115 0 chr12 1222252 1222461 -143060028 - L1MB7 LINE L1 -19 6165 5933 661 125 133 0 chr12 1222443 1222571 -143059918 + THE1B-int LTR MaLR 1436 1580 0 * 1967 139 50 36 chr12 1222571 1222930 -143059559 + THE1B LTR MaLR 1 364 0 1171 169 12 4 chr12 1222931 1223180 -143059309 - L1M4 LINE L1 -2085 4061 3811 2101 109 3 3 chr12 1224156 1224460 -143058029 - AluSc SINE Alu -1 308 5 1602 195 7 13 chr12 1224575 1224873 -143057616 - AluJb SINE Alu -16 296 1 2315 101 3 7 chr12 1224930 1225236 -143057253 - AluSq SINE Alu -8 305 1 894 269 100 3 chr12 1225743 1226052 -143056437 + LTR16A LTR ERVL 106 444 -6 247 333 41 20 chr12 1226570 1226765 -143055724 - L1ME4a LINE L1 -198 5923 5725 221 232 125 0 chr12 1226898 1226954 -143055535 - MER91C DNA MER1_type -33 107 45 221 325 112 0 chr12 1227426 1227521 -143054968 - MIR SINE MIR -18 190 75 213 39 0 0 chr12 1227804 1227830 -143054659 + (T)n Simple_repeat Simple_repeat 1 26 0 1688 211 7 0 chr12 1228638 1228936 -143053553 + AluJo SINE Alu 1 300 -12 24 53 0 0 chr12 1229201 1229239 -143053250 + AT_rich Low_complexity Low_complexity 1 38 0 210 244 44 0 chr12 1229654 1229699 -143052790 + MIR SINE MIR 5 51 -211 * 232 293 13 0 chr12 1229696 1229771 -143052718 + MIR SINE MIR 153 228 -34 12794 123 36 70 chr12 1231357 1231986 -143050503 - Tigger1 DNA MER2_type 0 2418 1769 2295 94 0 3 chr12 1231986 1232285 -143050204 - AluSq SINE Alu -15 298 1 12794 123 36 70 chr12 1232285 1233029 -143049460 - Tigger1 DNA MER2_type -649 1769 1001 902 229 0 0 chr12 1233029 1233195 -143049294 - FRAM SINE Alu 0 166 1 12794 123 36 70 chr12 1233195 1234323 -143048166 - Tigger1 DNA MER2_type -1417 1001 1 590 219 21 139 chr12 1235186 1235423 -143047066 + L2 LINE L2 3104 3312 -1 260 352 19 0 chr12 1235757 1235865 -143046624 + L2 LINE L2 2691 2800 -514 2815 16 0 0 chr12 1235946 1236257 -143046232 - AluYa5 SINE Alu 0 311 1 220 291 0 18 chr12 1236274 1236329 -143046160 + L2 LINE L2 3219 3272 0 270 0 0 0 chr12 1236704 1236734 -143045755 + (TG)n Simple_repeat Simple_repeat 1 30 0 2060 118 11 3 chr12 1237276 1237563 -143044926 - AluSx SINE Alu -23 289 1 2125 99 57 0 chr12 1237967 1238249 -143044240 + AluSp SINE Alu 1 298 -15 1690 151 11 35 chr12 1239111 1239396 -143043093 - AluJo SINE Alu -13 299 22 25 65 0 0 chr12 1239661 1239707 -143042782 + AT_rich Low_complexity Low_complexity 1 46 0 742 186 16 0 chr12 1240184 1240313 -143042176 + AluJo/FLAM SINE Alu 2 132 -170 2366 80 0 7 chr12 1240313 1240614 -143041875 + AluSg SINE Alu 10 308 -2 21 36 0 0 chr12 1240768 1240796 -143041693 + AT_rich Low_complexity Low_complexity 1 28 0 1542 185 36 26 chr12 1241192 1241375 -143041114 - AluJo SINE Alu -1 311 122 2179 109 0 0 chr12 1241375 1241659 -143040830 - AluSg SINE Alu -26 284 1 1542 185 36 26 chr12 1241659 1241783 -143040706 - AluJo SINE Alu -190 122 1 25 0 0 0 chr12 1242182 1242207 -143040282 + AT_rich Low_complexity Low_complexity 1 25 0 2022 143 0 13 chr12 1243277 1243585 -143038904 - AluSx SINE Alu -8 304 1 775 188 0 0 chr12 1243884 1244017 -143038472 - FLAM_C SINE Alu 0 133 1 549 362 72 29 chr12 1244175 1244454 -143038035 - L2 LINE L2 0 3272 2982 30 0 0 0 chr12 1244505 1244535 -143037954 + AT_rich Low_complexity Low_complexity 1 30 0 266 290 15 8 chr12 1244836 1244967 -143037522 + L1MEc LINE L1 41 172 -6224 627 199 0 30 chr12 1245532 1245663 -143036826 - FLAM_C SINE Alu -6 127 1 326 289 107 0 chr12 1248435 1248556 -143033933 - MIR3 SINE MIR -65 143 10 282 233 0 0 chr12 1249880 1249966 -143032523 + (CATA)n Simple_repeat Simple_repeat 2 87 0 23 0 0 0 chr12 1249981 1250004 -143032485 + AT_rich Low_complexity Low_complexity 1 23 0 683 261 19 97 chr12 1250017 1250389 -143032100 - MLT2C1 LTR ERVL -51 346 4 2305 90 0 3 chr12 1250588 1250912 -143031577 + AluSx SINE Alu 1 323 0 214 277 0 62 chr12 1251451 1251516 -143030973 - L2 LINE L2 -250 3063 3003 786 175 27 33 chr12 1251563 1251746 -143030743 - L1ME1 LINE L1 -9 6157 5976 436 285 76 37 chr12 1251869 1252308 -143030181 + MLT1L LTR MaLR 116 615 0 1748 169 24 3 chr12 1252948 1253238 -143029251 - AluJb SINE Alu -14 298 3 594 91 0 0 chr12 1253257 1253356 -143029133 + (TC)n Simple_repeat Simple_repeat 2 100 0 513 0 0 0 chr12 1253356 1253413 -143029076 + (CA)n Simple_repeat Simple_repeat 2 58 0 2190 138 0 0 chr12 1253427 1253731 -143028758 - AluSx SINE Alu -8 304 1 188 301 68 27 chr12 1253755 1253828 -143028661 - MIR SINE MIR -151 111 36 219 36 0 0 chr12 1254353 1254381 -143028108 + (TTTTG)n Simple_repeat Simple_repeat 2 29 0 1760 168 14 7 chr12 1254387 1254678 -143027811 - AluJb SINE Alu -19 293 1 2213 113 87 8 chr12 1255038 1255418 -143027071 - MSTA LTR MaLR 0 428 19 594 94 0 0 chr12 1255420 1255505 -143026984 - MSTA LTR MaLR -325 103 19 618 71 0 0 chr12 1255507 1255592 -143026897 - MSTA LTR MaLR -325 103 19 615 71 0 0 chr12 1255594 1255679 -143026810 - MSTA LTR MaLR -325 103 19 726 87 0 0 chr12 1255681 1255784 -143026705 - MSTA LTR MaLR -325 103 1 2279 97 0 26 chr12 1255939 1256250 -143026239 + AluSq SINE Alu 1 303 -10 2498 56 0 0 chr12 1257004 1257308 -143025181 - AluY SINE Alu -7 304 1 236 243 14 14 chr12 1257406 1257480 -143025009 + (TA)n Simple_repeat Simple_repeat 2 75 0 399 175 29 29 chr12 1257647 1257750 -143024739 + MER104 DNA Tc2 31 133 -47 1908 169 7 0 chr12 1258826 1259122 -143023367 + AluJb SINE Alu 1 298 -14 23 0 0 0 chr12 1259174 1259197 -143023292 + AT_rich Low_complexity Low_complexity 1 23 0 2254 91 0 0 chr12 1259521 1259808 -143022681 - AluSx SINE Alu -25 287 1 352 278 91 32 chr12 1261468 1261655 -143020834 - MIR SINE MIR 0 262 65 351 203 0 0 chr12 1261810 1261889 -143020600 + (TA)n Simple_repeat Simple_repeat 1 79 0 221 287 35 0 chr12 1262770 1262853 -143019636 + MIR SINE MIR 79 164 -98 801 100 77 8 chr12 1263331 1263461 -143019028 + MER85 DNA T2_type 1 139 0 414 105 92 0 chr12 1264306 1264382 -143018107 + MER53 DNA DNA 1 83 -106 466 321 49 16 chr12 1264476 1264660 -143017829 - MIR SINE MIR -39 223 34 1287 129 53 31 chr12 1264691 1264916 -143017573 - MER30 DNA MER1_type 0 230 1 1162 93 6 47 chr12 1265234 1265406 -143017083 - AluSq SINE Alu -13 300 136 2282 105 0 0 chr12 1265408 1265703 -143016786 - AluSx SINE Alu -1 311 17 391 260 182 13 chr12 1266068 1266222 -143016267 - MER5A DNA MER1_type 0 189 10 2123 105 31 3 chr12 1267164 1267450 -143015039 + AluSc SINE Alu 1 294 -15 2232 77 7 3 chr12 1267612 1267898 -143014591 - AluSp SINE Alu -26 287 1 2050 126 0 32 chr12 1268011 1268320 -143014169 - AluSq SINE Alu -14 299 1 2126 128 21 3 chr12 1268989 1269326 -143013163 - MER61A LTR ERV1 0 343 1 2057 134 0 3 chr12 1269907 1270206 -143012283 + AluSx SINE Alu 3 300 -12 1134 139 6 0 chr12 1270208 1270381 -143012108 + AluSg/x SINE Alu 135 308 -2 230 319 113 34 chr12 1270660 1270898 -143011591 + MIR SINE MIR 5 261 -1 26 64 0 0 chr12 1271053 1271100 -143011389 + AT_rich Low_complexity Low_complexity 1 47 0 348 24 0 0 chr12 1271112 1271153 -143011336 + (CA)n Simple_repeat Simple_repeat 2 42 0 480 355 56 21 chr12 1271183 1271417 -143011072 - MIR SINE MIR -15 247 6 2476 318 100 35 chr12 1274068 1275328 -143007161 + L2 LINE L2 866 2268 -1046 2318 105 0 0 chr12 1275328 1275623 -143006866 - AluSx SINE Alu -17 295 1 2476 318 100 35 chr12 1275623 1276080 -143006409 + L2 LINE L2 2268 2694 -620 1271 148 10 5 chr12 1276086 1276288 -143006201 - AluJb SINE Alu -10 302 100 485 304 217 34 chr12 1276347 1276848 -143005641 + L2 LINE L2 2720 3310 -3 605 247 181 0 chr12 1277072 1277254 -143005235 + MER58C DNA MER1_type 1 215 0 886 286 95 14 chr12 1277323 1277680 -143004809 + L2 LINE L2 2925 3310 -3 1313 187 78 33 chr12 1278323 1278654 -143003835 - MER7A DNA MER2_type -1 345 2 1945 119 51 10 chr12 1278670 1278965 -143003524 - AluSx SINE Alu -5 307 1 275 273 0 0 chr12 1279490 1279556 -143002933 - L2 LINE L2 -3 3310 3245 360 331 173 0 chr12 1279854 1279993 -143002496 - MER5A DNA MER1_type -15 174 12 220 200 0 0 chr12 1280698 1280738 -143001751 + (CA)n Simple_repeat Simple_repeat 1 40 0 21 36 0 0 chr12 1281065 1281093 -143001396 + AT_rich Low_complexity Low_complexity 1 28 0 1746 161 39 32 chr12 1281149 1281459 -143001030 + AluJo SINE Alu 1 312 0 1591 178 44 0 chr12 1281628 1281898 -143000591 + AluJo SINE Alu 1 282 -30 396 0 0 0 chr12 1281900 1281944 -143000545 + (CA)n Simple_repeat Simple_repeat 2 45 0 1801 152 44 39 chr12 1282720 1283129 -142999360 - L1MA9 LINE L1 0 7731 7321 2010 142 7 0 chr12 1283132 1283427 -142999062 - AluSx SINE Alu -15 297 1 4954 138 51 36 chr12 1283427 1284795 -142997694 - L1MA9 LINE L1 -487 7244 5858 4046 182 44 9 chr12 1284802 1285659 -142996830 - L1MA9 LINE L1 -1806 5759 4873 1293 194 38 19 chr12 1285693 1285956 -142996533 + AluJo SINE Alu 24 291 -21 4078 232 80 74 chr12 1285981 1286455 -142996034 - L1MA9 LINE L1 -2703 4862 4392 2222 102 27 0 chr12 1286455 1286749 -142995740 - AluSx SINE Alu -10 302 1 4078 232 80 74 chr12 1286749 1288198 -142994291 - L1MA9 LINE L1 -3173 4392 2928 2205 93 3 3 chr12 1288198 1288488 -142994001 - AluY SINE Alu -20 291 2 4078 232 80 74 chr12 1288488 1289313 -142993176 - L1MA9 LINE L1 -4637 2928 2109 2258 119 0 0 chr12 1289641 1289944 -142992545 + AluSx SINE Alu 3 305 -7 557 257 72 64 chr12 1289999 1290497 -142991992 + L1MC5 LINE L1 7265 7766 -195 1041 186 32 6 chr12 1290613 1290898 -142991591 + MER47B DNA MER2_type 29 418 0 395 320 46 5 chr12 1291020 1291214 -142991275 + L1ME LINE L1 4610 4811 -1335 687 303 90 23 chr12 1291429 1291537 -142990952 + L1ME LINE L1 5051 5150 -1012 1618 188 35 0 chr12 1291537 1291824 -142990665 + AluJb SINE Alu 1 297 -15 687 303 90 23 chr12 1291824 1292400 -142990089 + L1ME LINE L1 5150 5787 -375 316 281 12 0 chr12 1293717 1293799 -142988690 + CT-rich Low_complexity Low_complexity 3 85 0 357 345 36 12 chr12 1294013 1294178 -142988311 - MIR SINE MIR -74 188 20 189 306 61 61 chr12 1295245 1295392 -142987097 - MIR SINE MIR -50 212 66 278 267 0 17 chr12 1295467 1295527 -142986962 + MIR SINE MIR 21 79 -129 1028 171 239 13 chr12 1295546 1295806 -142986683 - AluJo SINE Alu 0 302 1 1257 217 37 10 chr12 1295896 1296196 -142986293 + AluJo SINE Alu 1 308 -4 479 217 21 146 chr12 1296199 1296265 -142986224 + L1MC4 LINE L1 6737 6810 -1217 758 242 21 11 chr12 1296265 1296451 -142986038 - MER5A DNA MER1_type -1 188 1 479 217 21 146 chr12 1296451 1296624 -142985865 + L1MC4 LINE L1 6810 7012 -1015 289 196 161 42 chr12 1296687 1296830 -142985659 + L1MC5 LINE L1 7758 7917 -44 23 0 0 0 chr12 1297170 1297193 -142985296 + AT_rich Low_complexity Low_complexity 1 23 0 1955 97 48 14 chr12 1298295 1298584 -142983905 - AluSx SINE Alu 0 312 14 203 160 100 0 chr12 1299068 1299118 -142983371 + MIR SINE MIR 158 212 -50 1254 203 86 52 chr12 1299172 1299356 -142983133 - MER2 DNA MER2_type 0 345 144 2891 16 0 0 chr12 1299356 1299674 -142982815 + AluYb8 SINE Alu 1 318 0 1254 203 86 52 chr12 1299674 1299815 -142982674 - MER2 DNA MER2_type -201 144 9 691 221 91 5 chr12 1300075 1300274 -142982215 + MER20 DNA MER1_type 1 216 -3 1697 149 29 18 chr12 1300948 1301269 -142981220 - AluSx SINE Alu 0 324 1 345 226 65 19 chr12 1301764 1301919 -142980570 - L1ME3A LINE L1 -205 5965 5804 300 147 21 126 chr12 1302319 1302384 -142980105 - Charlie1 DNA MER1_type -7 2754 2700 838 124 0 29 chr12 1302384 1302521 -142979968 - FLAM_C SINE Alu 0 133 1 300 147 21 126 chr12 1302521 1302550 -142979939 - Charlie1 DNA MER1_type -61 2700 2670 552 263 66 14 chr12 1302554 1302767 -142979722 + L1MC4a LINE L1 5597 5820 -1988 2412 237 68 58 chr12 1302775 1303433 -142979056 + L1MC4a LINE L1 6906 7577 -231 787 227 152 19 chr12 1303433 1303697 -142978792 + AluJb SINE Alu 2 300 -2 2412 237 68 58 chr12 1303697 1303931 -142978558 + L1MC4a LINE L1 7577 7807 -1 2264 103 3 0 chr12 1304165 1304466 -142978023 + AluSp SINE Alu 1 302 -11 656 275 85 43 chr12 1304647 1304952 -142977537 - L2 LINE L2 -1 3312 2995 239 309 120 46 chr12 1304998 1305173 -142977316 - L2 LINE L2 -478 2836 2649 246 370 22 11 chr12 1305207 1305299 -142977190 - L2 LINE L2 -36 3236 3144 24 0 0 0 chr12 1305323 1305347 -142977142 + AT_rich Low_complexity Low_complexity 1 24 0 1555 155 11 33 chr12 1305347 1305618 -142976871 - AluJo SINE Alu -24 288 24 2399 133 6 3 chr12 1306134 1306488 -142976001 - MLT1A1 LTR MaLR -2 363 9 31 26 0 0 chr12 1306993 1307031 -142975458 + AT_rich Low_complexity Low_complexity 1 38 0 26 30 0 0 chr12 1308424 1308457 -142974032 + AT_rich Low_complexity Low_complexity 1 33 0 1075 216 0 0 chr12 1308458 1308676 -142973813 - L1MA4 LINE L1 -14 6286 6069 2257 102 3 0 chr12 1309845 1310140 -142972349 + AluSp SINE Alu 1 296 -17 292 51 0 0 chr12 1310884 1310923 -142971566 + MADE1 DNA Mariner 42 80 0 695 107 52 68 chr12 1310940 1310954 -142971535 - L1MA9 LINE L1 0 6312 6299 1873 138 3 3 chr12 1310954 1311243 -142971246 - AluSx SINE Alu -3 309 21 695 107 52 68 chr12 1311243 1311396 -142971093 - L1MA9 LINE L1 -13 6299 6141 6606 74 28 0 chr12 1311396 1312072 -142970417 - L1PA7 LINE L1 0 6154 5463 2466 50 0 23 chr12 1312072 1312374 -142970115 - AluY SINE Alu -1 310 16 6606 74 28 0 chr12 1312374 1312660 -142969829 - L1PA7 LINE L1 -691 5463 5187 695 107 52 68 chr12 1312660 1312698 -142969791 - L1MA9 LINE L1 -171 6141 6104 1656 249 111 16 chr12 1313393 1313888 -142968601 + MLT1F LTR MaLR 1 542 0 1425 167 75 3 chr12 1314205 1314499 -142967990 - MER33 DNA MER1_type -8 316 2 1382 238 173 65 chr12 1315532 1315963 -142966526 - HAL1 LINE L1 0 2507 2124 2418 81 3 7 chr12 1315963 1316273 -142966216 - AluSg SINE Alu -1 309 1 1382 238 173 65 chr12 1316273 1316839 -142965650 - HAL1 LINE L1 -383 2124 1402 300 27 0 0 chr12 1318108 1318145 -142964344 + (TTTTG)n Simple_repeat Simple_repeat 3 39 0 2356 102 0 6 chr12 1320126 1320440 -142962049 - AluSq SINE Alu -1 312 1 2625 24 0 7 chr12 1320831 1321129 -142961360 + AluY SINE Alu 1 296 -15 3277 178 64 13 chr12 1321867 1322614 -142959875 - L1MC2 LINE L1 -11 6333 5549 21 0 0 0 chr12 1322810 1322831 -142959658 + AT_rich Low_complexity Low_complexity 1 21 0 2525 87 0 0 chr12 1322843 1323155 -142959334 - AluSx SINE Alu 0 312 1 1676 181 0 14 chr12 1323926 1324218 -142958271 + AluJo SINE Alu 1 288 -24 335 331 24 116 chr12 1324796 1325047 -142957442 - L2 LINE L2 -16 3256 3029 1320 103 0 0 chr12 1325061 1325236 -142957253 + AluY SINE Alu 127 301 -10 582 297 117 51 chr12 1325519 1326118 -142956371 - L2 LINE L2 0 3313 2605 521 284 186 18 chr12 1326123 1326398 -142956091 + Charlie2 DNA MER1_type 6 326 -2536 2143 195 74 58 chr12 1326419 1326667 -142955822 + Charlie2 DNA MER1_type 1924 2166 -696 2015 120 7 7 chr12 1326667 1326958 -142955531 - AluSx SINE Alu -21 291 1 2143 195 74 58 chr12 1326958 1327561 -142954928 + Charlie2 DNA MER1_type 2166 2789 -73 452 345 43 5 chr12 1327734 1327943 -142954546 - L2 LINE L2 -739 2575 2359 699 204 98 0 chr12 1328017 1328149 -142954340 - FAM SINE Alu -27 158 14 331 339 35 29 chr12 1328149 1328320 -142954169 + L2 LINE L2 2237 2408 -906 463 293 144 13 chr12 1328479 1328708 -142953781 + MIR SINE MIR 4 262 0 2237 128 0 0 chr12 1329118 1329423 -142953066 + AluSg SINE Alu 1 305 -5 253 280 53 27 chr12 1329666 1329848 -142952641 + L1MC4 LINE L1 6544 6812 -1081 820 214 41 0 chr12 1329956 1330152 -142952337 + MER3 DNA MER1_type 1 204 -5 231 114 0 0 chr12 1330170 1330205 -142952284 + (TGGA)n Simple_repeat Simple_repeat 1 35 0 430 342 98 52 chr12 1330677 1330915 -142951574 - L2 LINE L2 -1 3312 3087 2016 155 0 0 chr12 1330915 1331241 -142951248 - AluSg SINE Alu 0 310 1 430 342 98 52 chr12 1331241 1331449 -142951040 - L2 LINE L2 -226 3087 2845 474 318 115 75 chr12 1331468 1331656 -142950833 - L2 LINE L2 -432 2882 2703 1849 111 0 0 chr12 1331656 1331899 -142950590 + AluSx SINE Alu 1 243 -69 474 318 115 75 chr12 1331899 1332153 -142950336 - L2 LINE L2 -611 2703 2422 1023 112 25 6 chr12 1332154 1332315 -142950174 - MSTB1 LTR MaLR 0 432 269 552 293 39 85 chr12 1332578 1332675 -142949814 + L2 LINE L2 2998 3098 -215 2393 80 3 10 chr12 1332675 1332989 -142949500 - AluSx SINE Alu 0 312 1 552 293 39 85 chr12 1332989 1333222 -142949267 + L2 LINE L2 3098 3313 0 21 0 0 0 chr12 1336109 1336130 -142946359 + AT_rich Low_complexity Low_complexity 1 21 0 2313 92 0 22 chr12 1336130 1336444 -142946045 - AluSg SINE Alu -3 307 1 264 359 61 8 chr12 1336922 1337049 -142945440 + MIR SINE MIR 27 135 -73 259 243 14 27 chr12 1337149 1337223 -142945266 + (CA)n Simple_repeat Simple_repeat 1 73 0 739 260 61 22 chr12 1338644 1338897 -142943592 + MIR SINE MIR 2 262 0 5759 114 22 39 chr12 1340224 1340716 -142941773 - L1MA4 LINE L1 -5 6295 5796 396 0 0 0 chr12 1340716 1340760 -142941729 + (TG)n Simple_repeat Simple_repeat 2 45 0 5759 114 22 39 chr12 1340760 1341139 -142941350 - L1MA4 LINE L1 -504 5796 5440 1232 178 170 0 chr12 1341139 1341380 -142941109 - AluJo SINE Alu -30 282 1 5759 114 22 39 chr12 1341380 1341545 -142940944 - L1MA4 LINE L1 -860 5440 5274 572 309 80 60 chr12 1341816 1342485 -142940004 + L1M4 LINE L1 3175 3872 -2274 2111 124 0 0 chr12 1342485 1342767 -142939722 + AluSx SINE Alu 24 305 -7 572 309 80 60 chr12 1342767 1343102 -142939387 + L1M4 LINE L1 3872 4199 -1947 670 241 118 14 chr12 1343406 1343754 -142938735 + L1M4 LINE L1 4660 5043 -1103 1562 214 53 69 chr12 1343808 1344332 -142938157 + MLT2B1 LTR ERVL 1 516 -4 491 128 0 0 chr12 1344400 1344486 -142938003 + L1M4 LINE L1 4614 4699 -1447 997 99 0 0 chr12 1344734 1344865 -142937624 - AluSq/x SINE Alu -182 131 1 423 0 0 0 chr12 1345535 1345582 -142936907 + (CA)n Simple_repeat Simple_repeat 2 48 0 223 161 21 32 chr12 1345621 1345714 -142936775 + (TA)n Simple_repeat Simple_repeat 1 92 0 30 0 0 0 chr12 1348638 1348668 -142933821 + AT_rich Low_complexity Low_complexity 1 30 0 21 36 0 0 chr12 1348849 1348877 -142933612 + AT_rich Low_complexity Low_complexity 1 28 0 2394 60 0 57 chr12 1349179 1349315 -142933174 + AluSq SINE Alu 1 143 -170 2385 88 3 0 chr12 1349315 1349611 -142932878 + AluSg SINE Alu 1 297 -13 2394 60 0 57 chr12 1349611 1349623 -142932866 + AluSq SINE Alu 143 154 -159 2301 71 4 0 chr12 1349623 1349930 -142932559 + AluY SINE Alu 1 308 0 2394 60 0 57 chr12 1349930 1350096 -142932393 + AluSq SINE Alu 154 299 -14 298 239 54 43 chr12 1351468 1351560 -142930929 + MIR SINE MIR 100 192 -70 309 245 57 9 chr12 1352362 1352468 -142930021 + L1M4b LINE L1 1381 1491 -5368 1087 210 0 15 chr12 1352589 1352784 -142929705 + AluJb SINE Alu 97 288 -24 1277 280 58 42 chr12 1352793 1352852 -142929637 + L1M4b LINE L1 1715 1772 -5366 2235 84 47 0 chr12 1352852 1353150 -142929339 - AluSp SINE Alu -1 312 1 1277 280 58 42 chr12 1353150 1353870 -142928619 + L1M4b LINE L1 1772 2551 -4587 1617 177 10 45 chr12 1353870 1354180 -142928309 + AluJb SINE Alu 1 299 -13 1277 280 58 42 chr12 1354180 1354380 -142928109 + L1M4b LINE L1 2551 2746 -4392 787 260 0 0 chr12 1354393 1354566 -142927923 + FRAM SINE Alu 1 170 -6 2721 234 100 43 chr12 1354598 1354710 -142927779 + L1M4b LINE L1 2736 2840 -4117 2245 112 0 3 chr12 1354710 1355023 -142927466 + AluSx SINE Alu 1 312 0 2721 234 100 43 chr12 1355023 1356425 -142926064 + L1M4b LINE L1 2840 4302 -2655 2019 142 19 6 chr12 1356424 1357800 -142924689 + L1PB3 LINE L1 4649 6151 -3 * 3165 110 21 14 chr12 1357801 1358284 -142924205 + L1PA13 LINE L1 5678 6163 0 1734 280 54 7 chr12 1358288 1359009 -142923480 + L1M4b LINE L1 4286 5040 -1917 2766 134 18 26 chr12 1359018 1359136 -142923353 - Tigger1 DNA MER2_type -1 2417 2300 1722 156 21 3 chr12 1359136 1359424 -142923065 + AluJo SINE Alu 1 293 -19 2766 134 18 26 chr12 1359424 1359805 -142922684 - Tigger1 DNA MER2_type -118 2300 1922 2336 84 0 10 chr12 1359805 1360114 -142922375 + AluY SINE Alu 1 306 -5 2362 83 10 0 chr12 1360124 1360424 -142922065 + AluSp SINE Alu 1 303 -10 2414 50 30 0 chr12 1361230 1361530 -142920959 - AluY SINE Alu -2 309 1 180 97 0 0 chr12 1363174 1363205 -142919284 + (T)n Simple_repeat Simple_repeat 1 31 0 246 62 0 0 chr12 1364652 1364684 -142917805 + (TTA)n Simple_repeat Simple_repeat 2 33 0 1484 227 146 25 chr12 1364953 1365268 -142917221 - MER119 DNA MER1_type 0 583 308 2024 183 5 11 chr12 1365268 1365635 -142916854 + MLT1A1 LTR MaLR 1 365 0 1484 227 146 25 chr12 1365635 1365839 -142916650 - MER119 DNA MER1_type -275 308 1 22 0 0 0 chr12 1366165 1366187 -142916302 + AT_rich Low_complexity Low_complexity 1 22 0 680 252 33 33 chr12 1366219 1366373 -142916116 + MIR SINE MIR 15 172 -90 1538 85 0 0 chr12 1366373 1366606 -142915883 - AluY SINE Alu 0 324 92 680 252 33 33 chr12 1366606 1366660 -142915829 + MIR SINE MIR 171 224 -38 306 0 0 0 chr12 1366660 1366694 -142915795 + (TTTTA)n Simple_repeat Simple_repeat 2 35 0 1665 108 77 19 chr12 1366701 1366961 -142915528 - AluSx SINE Alu -37 275 1 220 306 42 14 chr12 1367611 1367683 -142914806 + MIR SINE MIR 24 97 -165 1844 136 11 0 chr12 1368844 1369109 -142913380 - AluSx SINE Alu -44 268 1 323 282 77 77 chr12 1369505 1369884 -142912605 - MLT1J LTR MaLR -105 406 28 31 16 0 66 chr12 1370126 1370156 -142912333 + AT_rich Low_complexity Low_complexity 1 27 -30 2058 113 7 0 chr12 1370156 1370438 -142912051 + AluSx SINE Alu 3 286 -26 31 16 0 66 chr12 1370438 1370468 -142912021 + AT_rich Low_complexity Low_complexity 27 57 0 261 304 51 0 chr12 1370614 1370693 -142911796 + MIR SINE MIR 71 153 -109 262 292 0 17 chr12 1370695 1370815 -142911674 + L1ME LINE L1 5311 5428 -2380 261 291 137 11 chr12 1370838 1371013 -142911476 + L1ME LINE L1 5457 5653 -468 21 0 0 0 chr12 1371232 1371253 -142911236 + AT_rich Low_complexity Low_complexity 1 21 0 213 39 0 0 chr12 1371491 1371517 -142910972 + (TTTA)n Simple_repeat Simple_repeat 3 28 0 1636 134 13 0 chr12 1371535 1371767 -142910722 - AluSx SINE Alu -77 235 1 1853 87 0 0 chr12 1371792 1372046 -142910443 - AluSx SINE Alu 0 309 56 240 100 0 0 chr12 1372162 1372202 -142910287 + (GA)n Simple_repeat Simple_repeat 2 41 0 2119 87 17 3 chr12 1372348 1372637 -142909852 - AluY SINE Alu -18 293 1 31 0 0 0 chr12 1372905 1372936 -142909553 + AT_rich Low_complexity Low_complexity 1 31 0 5404 33 5 17 chr12 1373037 1373328 -142909161 + L1PA7 LINE L1 5496 5789 -365 2450 90 0 3 chr12 1373328 1373639 -142908850 + AluSq SINE Alu 1 310 -3 5404 33 5 17 chr12 1373639 1374011 -142908478 + L1PA7 LINE L1 5789 6151 -3 491 318 49 28 chr12 1376374 1376847 -142905642 - L1MC4a LINE L1 -297 5824 5467 368 200 98 166 chr12 1376880 1377145 -142905344 - L1MC4a LINE L1 -1981 5827 5581 2538 65 0 0 chr12 1377145 1377451 -142905038 - AluY SINE Alu -5 306 1 297 324 37 22 chr12 1377643 1377779 -142904710 + MIR SINE MIR 102 239 -23 329 264 145 0 chr12 1378585 1378744 -142903745 + MIR SINE MIR 75 256 -6 273 333 17 11 chr12 1378770 1378887 -142903602 - MIR SINE MIR -79 129 7 414 314 117 89 chr12 1383957 1384575 -142897914 + L2 LINE L2 2033 2632 -682 200 31 62 0 chr12 1384575 1384607 -142897882 + (TTTG)n Simple_repeat Simple_repeat 2 35 0 1568 201 18 7 chr12 1384611 1384894 -142897595 - AluJb SINE Alu -26 286 1 414 314 117 89 chr12 1384894 1385089 -142897400 + L2 LINE L2 2634 2874 -440 2321 98 3 3 chr12 1385462 1385767 -142896722 + AluSx SINE Alu 1 305 -7 310 273 30 0 chr12 1385935 1386034 -142896455 - MIR SINE MIR -42 220 119 202 311 137 26 chr12 1386129 1386319 -142896170 - L2 LINE L2 -648 2666 2456 198 0 0 0 chr12 1386893 1386915 -142895574 + (TTA)n Simple_repeat Simple_repeat 2 23 0 243 295 0 0 chr12 1387035 1387096 -142895393 + CT-rich Low_complexity Low_complexity 3 63 0 360 258 70 51 chr12 1387149 1387405 -142895084 - L1MEd LINE L1 -4890 1229 969 1062 275 29 52 chr12 1387453 1387936 -142894553 - L1ME3A LINE L1 -5 6165 5694 351 273 106 42 chr12 1388466 1388921 -142893568 - HAL1 LINE L1 -1201 1306 823 17664 174 22 78 chr12 1389328 1389781 -142892708 - L1PA13 LINE L1 -4 6810 6334 2466 77 0 0 chr12 1389781 1390081 -142892408 - AluSc SINE Alu -9 300 1 17664 174 22 78 chr12 1390081 1392333 -142890156 - L1PA13 LINE L1 -480 6334 3959 288 0 0 0 chr12 1392333 1392365 -142890124 + (TTGG)n Simple_repeat Simple_repeat 4 35 0 17664 174 22 78 chr12 1392365 1393254 -142889235 - L1PA13 LINE L1 -2855 3959 3022 1957 138 24 0 chr12 1393254 1393413 -142889076 - AluSx SINE Alu -16 296 125 195 42 0 0 chr12 1393413 1393437 -142889052 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 1957 138 24 0 chr12 1393437 1393566 -142888923 - AluSx SINE Alu -187 125 1 17664 174 22 78 chr12 1393566 1397204 -142885285 - L1PA13 LINE L1 -3792 3022 8 740 173 0 16 chr12 1397223 1397350 -142885139 - FLAM_C SINE Alu -18 125 1 1839 86 0 16 chr12 1397532 1397777 -142884712 - AluSc SINE Alu 0 309 69 3903 54 6 8 chr12 1397777 1398276 -142884213 + L1PA6 LINE L1 5655 6152 -2 25 31 0 0 chr12 1398506 1398538 -142883951 + AT_rich Low_complexity Low_complexity 1 32 0 2509 73 0 13 chr12 1398633 1398948 -142883541 + AluSx SINE Alu 1 311 -1 185 364 18 0 chr12 1399306 1399361 -142883128 - L2 LINE L2 -580 2734 2679 2352 72 7 0 chr12 1400300 1400591 -142881898 - AluY SINE Alu -18 293 1 430 319 33 42 chr12 1401134 1401347 -142881142 - MIR SINE MIR -6 256 46 288 309 0 8 chr12 1401413 1401539 -142880950 - HAL1b LINE L1 -31 1317 1193 261 222 209 0 chr12 1401542 1401631 -142880858 - HAL1b LINE L1 -203 1145 1076 2446 63 0 10 chr12 1401631 1401933 -142880556 - AluY SINE Alu -12 299 1 261 222 209 0 chr12 1401933 1401996 -142880493 - HAL1b LINE L1 -272 1076 961 344 299 123 21 chr12 1402120 1402404 -142880085 - HAL1b LINE L1 -542 806 494 198 0 0 0 chr12 1402610 1402632 -142879857 + (TTTG)n Simple_repeat Simple_repeat 2 23 0 2751 10 0 0 chr12 1403111 1403412 -142879077 + AluYb8 SINE Alu 1 301 -17 228 91 0 0 chr12 1403707 1403740 -142878749 + U2 snRNA snRNA 1 33 -155 992 121 23 0 chr12 1403792 1403966 -142878523 - L1MA8 LINE L1 -2 6289 6112 2154 112 3 0 chr12 1404152 1404446 -142878043 + AluSx SINE Alu 1 295 -17 2144 96 3 23 chr12 1404855 1405157 -142877332 + AluSq SINE Alu 1 296 -17 2209 87 13 13 chr12 1405832 1406131 -142876358 + AluSg SINE Alu 1 299 -11 2809 137 11 9 chr12 1407145 1407599 -142874890 - MSTB2 LTR MaLR 0 457 3 1812 148 38 1 chr12 1407753 1408117 -142874372 - L1M3 LINE L1 -501 5667 5290 443 113 0 0 chr12 1408134 1408205 -142874284 - L1MA5A LINE L1 -5 6292 6222 554 221 0 7 chr12 1408211 1408356 -142874133 - L1M3 LINE L1 -819 5327 5184 193 200 0 25 chr12 1408709 1408749 -142873740 + L2 LINE L2 3225 3263 -9 2633 58 0 0 chr12 1409469 1409780 -142872709 - AluY SINE Alu 0 311 1 337 270 80 135 chr12 1409802 1410165 -142872324 + L3 LINE CR1 1232 1574 -3 539 326 150 11 chr12 1410183 1410649 -142871840 + L2 LINE L2 1779 2309 -1005 210 265 10 78 chr12 1410655 1410692 -142871797 + MIR SINE MIR 164 202 -60 2063 133 3 0 chr12 1410692 1410986 -142871503 + AluSq SINE Alu 1 295 -18 210 265 10 78 chr12 1410986 1411050 -142871439 + MIR SINE MIR 202 258 -4 1564 141 36 0 chr12 1411122 1411370 -142871119 - AluSx SINE Alu -33 279 23 250 226 129 77 chr12 1411482 1411522 -142870967 - MER103 DNA DNA -1 165 129 1071 155 89 118 chr12 1411522 1411870 -142870619 - MER58B DNA MER1_type -3 338 1 250 226 129 77 chr12 1411870 1411984 -142870505 - MER103 DNA DNA -37 129 3 1847 155 24 3 chr12 1412374 1412664 -142869825 + AluJb SINE Alu 1 296 -16 306 0 0 0 chr12 1412664 1412698 -142869791 + (TG)n Simple_repeat Simple_repeat 2 35 0 759 205 86 0 chr12 1414530 1414681 -142867808 + FAM SINE Alu 11 174 -11 194 229 42 0 chr12 1415021 1415069 -142867420 - MER5A DNA MER1_type -88 101 52 1380 239 75 19 chr12 1415815 1416188 -142866301 - MSTD LTR MaLR -1 395 2 281 289 10 10 chr12 1416820 1416917 -142865572 - MARNA DNA Mariner -94 492 396 1537 167 19 69 chr12 1417251 1417568 -142864921 + AluJb SINE Alu 1 301 -11 1643 38 0 14 chr12 1417666 1417875 -142864614 + L1PA4 LINE L1 5950 6155 0 21 0 0 0 chr12 1417875 1417896 -142864593 + AT_rich Low_complexity Low_complexity 1 21 0 396 55 0 0 chr12 1418880 1418935 -142863554 + (TC)n Simple_repeat Simple_repeat 1 55 0 1492 188 28 9 chr12 1419030 1419350 -142863139 + L1MB3 LINE L1 5857 6182 -1 312 276 36 63 chr12 1419500 1419658 -142862831 - L1ME1 LINE L1 -127 6039 5893 2010 144 0 10 chr12 1419994 1420306 -142862183 - AluJb SINE Alu -3 309 1 270 333 171 17 chr12 1421217 1421451 -142861038 - L3 LINE CR1 -11 1566 1297 441 310 0 0 chr12 1421897 1422010 -142860479 - L2 LINE L2 -9 3304 3192 2253 142 78 2 chr12 1422236 1422674 -142859815 + L1MB2 LINE L1 5701 6171 0 210 71 0 0 chr12 1424396 1424424 -142858065 + (T)n Simple_repeat Simple_repeat 1 28 0 270 154 115 0 chr12 1424758 1424836 -142857653 + L1ME4a LINE L1 6031 6117 -4 1783 131 55 24 chr12 1427172 1427463 -142855026 - AluJb SINE Alu -12 300 1 1693 158 20 0 chr12 1427483 1427781 -142854708 - L1MB1 LINE L1 -1 6167 5864 487 273 31 37 chr12 1427818 1427979 -142854510 + MIR SINE MIR 32 191 -71 206 274 41 41 chr12 1427998 1428071 -142854418 + MIR SINE MIR 119 191 -71 214 264 42 42 chr12 1428090 1428162 -142854327 + MIR SINE MIR 119 190 -72 189 292 42 42 chr12 1428182 1428254 -142854235 + MIR SINE MIR 119 190 -72 549 164 9 0 chr12 1428944 1429054 -142853435 + L1MB3 LINE L1 6072 6182 -1 2263 120 0 0 chr12 1429950 1430259 -142852230 + AluSc SINE Alu 1 309 0 216 67 0 0 chr12 1431275 1431305 -142851184 + (T)n Simple_repeat Simple_repeat 1 30 0 1576 153 64 53 chr12 1431553 1431913 -142850576 - THE1B LTR MaLR 0 364 1 270 289 141 21 chr12 1431928 1432070 -142850419 + MIR SINE MIR 57 215 -47 2238 99 0 3 chr12 1432184 1432486 -142850003 - AluSg1 SINE Alu -8 301 1 624 249 83 5 chr12 1435621 1435826 -142846663 - MLT1F-int LTR MaLR -855 516 296 300 265 18 71 chr12 1435842 1436012 -142846477 - MLT1F-int LTR MaLR -1210 161 1 576 203 49 14 chr12 1436012 1436155 -142846334 - MLT1F LTR MaLR -2 540 393 716 248 31 53 chr12 1436160 1436386 -142846103 - MLT1F LTR MaLR -321 221 1 618 221 38 0 chr12 1436387 1436545 -142845944 + L1ME2 LINE L1 5756 5919 -245 577 174 0 97 chr12 1437791 1437946 -142844543 - FLAM_C SINE Alu 0 143 4 316 337 34 0 chr12 1438536 1438625 -142843864 + MIR3 SINE MIR 6 97 -111 311 296 76 12 chr12 1438771 1438943 -142843546 - Charlie8 DNA MER1_type -2157 260 78 250 290 29 0 chr12 1439027 1439096 -142843393 + MIR3 SINE MIR 103 173 -35 22 0 0 0 chr12 1439266 1439288 -142843201 + AT_rich Low_complexity Low_complexity 1 22 0 1135 145 0 0 chr12 1439933 1440099 -142842390 + AluSg/x SINE Alu 130 295 -15 715 264 94 24 chr12 1440291 1440503 -142841986 - MIR SINE MIR -35 227 1 2519 26 0 10 chr12 1441733 1442035 -142840454 - AluY SINE Alu -12 299 1 2348 105 3 0 chr12 1442482 1442787 -142839702 - AluSg SINE Alu -4 306 1 2230 113 0 13 chr12 1442816 1443116 -142839373 + AluSx SINE Alu 1 296 -16 416 255 61 66 chr12 1443121 1443317 -142839172 - L1ME3A LINE L1 -36 6134 5940 1543 200 58 81 chr12 1443370 1443815 -142838674 + MLT1D-int LTR MaLR 937 1371 0 1105 235 154 28 chr12 1443861 1444295 -142838194 + MLT1D LTR MaLR 17 505 0 2279 59 55 3 chr12 1444530 1444819 -142837670 + AluY SINE Alu 1 304 -7 299 329 13 87 chr12 1444953 1445263 -142837226 - L2 LINE L2 -464 2850 2564 309 232 58 29 chr12 1445274 1445416 -142837073 - MLT1J2 LTR MaLR -18 423 295 403 345 76 29 chr12 1445561 1445836 -142836653 - L2 LINE L2 -862 2452 2165 22 0 0 0 chr12 1446570 1446592 -142835897 + AT_rich Low_complexity Low_complexity 1 22 0 23 0 0 0 chr12 1446785 1446808 -142835681 + AT_rich Low_complexity Low_complexity 1 23 0 29 90 0 0 chr12 1446834 1446912 -142835577 + AT_rich Low_complexity Low_complexity 1 78 0 1696 226 103 17 chr12 1447521 1448418 -142834071 - L1MDa LINE L1 -5415 1125 119 1145 194 118 0 chr12 1448466 1448781 -142833708 - MER31A LTR ERV1 -6 479 128 1782 145 7 24 chr12 1449696 1449985 -142832504 + AluJb SINE Alu 1 284 -28 378 0 0 0 chr12 1450058 1450100 -142832389 + (TG)n Simple_repeat Simple_repeat 2 43 0 2307 67 40 3 chr12 1450197 1450495 -142831994 + AluY SINE Alu 2 310 -1 2497 63 3 0 chr12 1450569 1450872 -142831617 + AluY SINE Alu 1 304 -7 1801 146 140 29 chr12 1450932 1451317 -142831172 + MSTA LTR MaLR 1 428 0 294 355 59 13 chr12 1452850 1453002 -142829487 - L2 LINE L2 0 3272 3114 372 331 47 39 chr12 1453109 1453493 -142828996 + L1MEd LINE L1 144 530 -5589 1996 267 67 23 chr12 1453580 1454422 -142828067 + L1MC4a LINE L1 5462 6340 -1468 1932 130 18 0 chr12 1454450 1454734 -142827755 - AluJb SINE Alu -23 289 1 366 312 76 73 chr12 1454779 1455080 -142827409 + L1MC4a LINE L1 6401 6702 -1106 699 180 65 40 chr12 1455083 1455283 -142827206 - MLT1A1 LTR MaLR -3 362 158 1876 160 3 22 chr12 1455384 1455702 -142826787 - AluJo SINE Alu 0 312 1 2962 183 29 87 chr12 1455772 1457363 -142825126 - L1MB7 LINE L1 -15 6169 4672 2581 55 3 0 chr12 1457374 1457684 -142824805 - AluY SINE Alu 0 311 1 198 191 0 0 chr12 1457742 1457789 -142824700 + (TAG)n Simple_repeat Simple_repeat 2 48 0 22 35 0 0 chr12 1457925 1457954 -142824535 + AT_rich Low_complexity Low_complexity 1 29 0 724 286 113 0 chr12 1457954 1458167 -142824322 + MIR SINE MIR 20 256 -6 473 211 119 32 chr12 1458273 1458458 -142824031 + L1MEd LINE L1 943 1143 -4976 425 225 116 25 chr12 1458573 1458699 -142823790 + L1MEd LINE L1 2893 3006 -3123 2224 105 26 0 chr12 1458699 1459003 -142823486 + AluSx SINE Alu 1 312 0 425 225 116 25 chr12 1459003 1459065 -142823424 + L1MEd LINE L1 3006 3061 -3068 279 0 0 0 chr12 1459065 1459096 -142823393 + (CA)n Simple_repeat Simple_repeat 2 32 0 425 225 116 25 chr12 1459096 1459190 -142823299 + L1MEd LINE L1 3061 3202 -2927 192 234 0 0 chr12 1459636 1459683 -142822806 + CT-rich Low_complexity Low_complexity 2 48 0 991 247 9 0 chr12 1460497 1460716 -142821773 - MLT1A1 LTR MaLR 0 365 145 375 181 0 0 chr12 1460733 1460805 -142821684 + (TTTA)n Simple_repeat Simple_repeat 2 73 0 407 143 0 0 chr12 1461100 1461170 -142821319 - L1PA16 LINE L1 -2 6164 6095 678 162 11 123 chr12 1461174 1461307 -142821182 - MLT1A1 LTR MaLR -206 159 47 1967 132 3 7 chr12 1461307 1461640 -142820849 + AluSx SINE Alu 1 332 0 678 162 11 123 chr12 1461640 1461683 -142820806 - MLT1A1 LTR MaLR -318 47 1 2171 108 3 0 chr12 1461872 1462160 -142820329 + AluSx SINE Alu 1 289 -23 790 149 0 45 chr12 1462219 1462353 -142820136 + FLAM_C SINE Alu 1 128 -5 249 211 0 0 chr12 1462378 1462435 -142820054 + (TA)n Simple_repeat Simple_repeat 2 58 0 866 282 16 37 chr12 1462496 1462741 -142819748 - MIR SINE MIR -1 261 22 1288 167 13 34 chr12 1463108 1463342 -142819147 + AluJo SINE Alu 71 299 -13 736 144 0 0 chr12 1463861 1463972 -142818517 + FLAM_A SINE Alu 6 116 -26 27 0 0 0 chr12 1463972 1463999 -142818490 + AT_rich Low_complexity Low_complexity 1 27 0 1068 249 69 39 chr12 1464071 1464433 -142818056 - MLT1A2 LTR MaLR -1 373 1 1387 135 120 68 chr12 1466016 1466155 -142816334 + MER2 DNA MER2_type 1 131 -213 2055 131 0 0 chr12 1466155 1466459 -142816030 - AluSx SINE Alu 0 304 1 1387 135 120 68 chr12 1466459 1466585 -142815904 + MER2 DNA MER2_type 131 289 -55 216 97 0 0 chr12 1466585 1466616 -142815873 + (TA)n Simple_repeat Simple_repeat 1 31 0 1387 135 120 68 chr12 1466616 1466673 -142815816 + MER2 DNA MER2_type 289 342 -2 465 326 21 0 chr12 1468896 1469037 -142813452 + MIR SINE MIR 4 147 -115 778 297 33 0 chr12 1469055 1469267 -142813222 + MIR SINE MIR 13 231 -31 220 234 0 0 chr12 1469301 1469348 -142813141 + MIR SINE MIR 210 256 -6 213 219 110 68 chr12 1469366 1469439 -142813050 - MIR3 SINE MIR -45 163 88 1994 144 6 10 chr12 1469762 1470074 -142812415 + AluSx SINE Alu 1 311 -1 1602 191 21 50 chr12 1470266 1470321 -142812168 - MLT1A1 LTR MaLR 0 365 310 2159 132 12 21 chr12 1470321 1470661 -142811828 - MER1B DNA MER1_type 0 337 1 1602 191 21 50 chr12 1470661 1470981 -142811508 - MLT1A1 LTR MaLR -55 310 1 238 211 18 18 chr12 1471124 1471181 -142811308 + CT-rich Low_complexity Low_complexity 1 57 0 430 252 45 18 chr12 1471181 1471292 -142811197 + L2 LINE L2 3183 3296 -17 210 37 0 0 chr12 1471295 1471322 -142811167 + (TG)n Simple_repeat Simple_repeat 2 28 0 345 221 90 26 chr12 1472338 1472506 -142809983 - MIR SINE MIR -6 256 4 623 187 37 86 chr12 1473143 1473330 -142809159 + MIR SINE MIR 83 260 -2 2261 116 0 3 chr12 1473948 1474249 -142808240 + AluSx SINE Alu 1 300 -12 629 296 13 52 chr12 1474314 1474547 -142807942 - MIR SINE MIR -2 260 37 1072 209 105 83 chr12 1474653 1475016 -142807473 + MER39 LTR ERV1 1 354 -211 1198 44 19 0 chr12 1475016 1475176 -142807313 + (TTTC)n Simple_repeat Simple_repeat 2 164 0 1786 147 0 11 chr12 1475179 1475464 -142807025 - AluJo SINE Alu -30 282 1 1072 209 105 83 chr12 1475464 1475607 -142806882 + MER39 LTR ERV1 355 563 -2 1135 130 6 0 chr12 1476101 1476270 -142806219 + L1MB2 LINE L1 5995 6164 -7 2235 109 0 0 chr12 1476886 1477205 -142805284 - AluY SINE Alu 0 311 1 1473 138 40 4 chr12 1477432 1477685 -142804804 - L1MA5 LINE L1 -2 6298 6037 1523 189 65 92 chr12 1477688 1478132 -142804357 - LTR8A LTR ERV1 -6 721 290 1987 100 0 37 chr12 1478186 1478456 -142804033 + AluSc SINE Alu 1 260 -49 1046 164 72 125 chr12 1478466 1478770 -142803719 - LTR8A LTR ERV1 -439 288 1 3627 149 26 26 chr12 1478770 1479432 -142803057 - L1MA5 LINE L1 -265 6035 5374 1472 199 16 26 chr12 1479454 1479858 -142802631 + MER93b LTR ERV1 17 373 0 1315 288 19 17 chr12 1479862 1480328 -142802161 - L1M4 LINE L1 -3335 2811 2345 222 118 0 0 chr12 1480472 1480506 -142801983 + (TG)n Simple_repeat Simple_repeat 2 35 0 998 8 8 0 chr12 1481244 1481363 -142801126 + (TAGA)n Simple_repeat Simple_repeat 3 122 0 266 222 0 32 chr12 1482333 1482396 -142800093 + MIR SINE MIR 104 164 -98 2219 106 3 7 chr12 1482553 1482855 -142799634 - AluSq SINE Alu -12 301 1 454 287 25 18 chr12 1484119 1484289 -142798200 + MIR SINE MIR 81 250 -12 232 278 153 0 chr12 1485987 1486059 -142796430 - L2 LINE L2 -4 3268 3186 255 284 0 0 chr12 1486159 1486226 -142796263 - L2 LINE L2 -225 3047 2981 1404 220 54 25 chr12 1486326 1486826 -142795663 - MLT1F LTR MaLR 0 542 26 2261 97 0 10 chr12 1486832 1487130 -142795359 - AluSx SINE Alu -17 295 1 247 331 33 33 chr12 1487616 1487737 -142794752 + MIR3 SINE MIR 75 195 -13 1243 171 96 20 chr12 1488351 1488602 -142793887 - AluJo SINE Alu -15 297 28 632 241 59 3 chr12 1488611 1488819 -142793670 - MER58B DNA MER1_type -46 295 14 182 200 308 0 chr12 1488967 1489032 -142793457 - MIR SINE MIR -55 207 123 358 289 10 0 chr12 1489128 1489232 -142793257 - MIR SINE MIR -157 105 1 727 70 0 50 chr12 1490351 1490451 -142792038 + AluJb SINE Alu 210 304 -8 240 111 0 0 chr12 1492606 1492642 -142789847 + (CA)n Simple_repeat Simple_repeat 2 37 0 180 0 0 0 chr12 1494205 1494225 -142788264 + (TTTTG)n Simple_repeat Simple_repeat 3 22 0 1844 159 3 14 chr12 1495110 1495406 -142787083 + AluJb SINE Alu 1 293 -19 22 0 0 0 chr12 1495406 1495428 -142787061 + AT_rich Low_complexity Low_complexity 1 22 0 598 110 90 0 chr12 1496483 1496583 -142785906 - L1MA4 LINE L1 -29 6271 6163 2603 48 0 6 chr12 1496644 1496956 -142785533 - AluY SINE Alu -1 310 1 656 107 0 39 chr12 1496956 1497049 -142785440 - FLAM_A SINE Alu -178 133 43 612 0 0 0 chr12 1497051 1497119 -142785370 + (TG)n Simple_repeat Simple_repeat 1 68 0 1883 141 11 4 chr12 1497119 1497396 -142785093 - AluSx SINE Alu -33 279 1 2186 111 3 7 chr12 1497514 1497811 -142784678 - AluSx SINE Alu -16 296 1 2172 118 0 0 chr12 1498374 1498678 -142783811 - AluSx SINE Alu -8 304 1 253 281 124 47 chr12 1499168 1499351 -142783138 + L1ME4a LINE L1 5800 6016 -105 2301 81 34 0 chr12 1499351 1499649 -142782840 - AluY SINE Alu -3 308 1 253 281 124 47 chr12 1499649 1499764 -142782725 + L1ME4a LINE L1 6016 6121 0 225 0 0 0 chr12 1500977 1501002 -142781487 + (TTTTA)n Simple_repeat Simple_repeat 2 26 0 1279 134 125 69 chr12 1501462 1501673 -142780816 - L1MA8 LINE L1 0 6291 6054 2284 107 0 3 chr12 1501673 1501981 -142780508 - AluSx SINE Alu -5 307 1 1279 134 125 69 chr12 1501981 1502089 -142780400 - L1MA8 LINE L1 -237 6054 5954 616 220 8 0 chr12 1502298 1502430 -142780059 - MLT1A1 LTR MaLR 0 365 233 618 139 9 26 chr12 1502453 1502568 -142779921 - MLT1A1 LTR MaLR -252 113 1 1138 136 0 23 chr12 1503317 1503493 -142778996 + FRAM SINE Alu 1 166 -10 1737 173 6 31 chr12 1503688 1504006 -142778483 + AluJb SINE Alu 3 312 0 2023 142 3 3 chr12 1504089 1504400 -142778089 - AluSx SINE Alu -1 311 1 4221 102 38 8 chr12 1505184 1505793 -142776696 + THE1C-int LTR MaLR 954 1580 0 2240 104 122 3 chr12 1505793 1506128 -142776361 + THE1C LTR MaLR 1 375 0 1296 242 116 17 chr12 1506129 1506604 -142775885 - L1MCc LINE L1 -4025 3097 2576 * 4067 173 61 41 chr12 1506600 1507637 -142774852 - L1MB3 LINE L1 0 6183 5128 379 250 62 76 chr12 1507637 1507781 -142774708 - L1MCc LINE L1 -4532 2590 2449 1654 160 6 66 chr12 1507781 1508113 -142774376 + AluJo SINE Alu 1 312 0 379 250 62 76 chr12 1508113 1508192 -142774297 - L1MCc LINE L1 -4673 2449 2370 2186 158 18 23 chr12 1508204 1508589 -142773900 + MLT1B LTR MaLR 2 384 -6 1373 261 38 60 chr12 1508594 1509609 -142772880 - L1MCc LINE L1 -4760 2362 877 3441 209 48 22 chr12 1510302 1511033 -142771456 + MER21B LTR ERV1 1 750 -113 1011 223 67 10 chr12 1511538 1511838 -142770651 - L1MA4 LINE L1 -3 6297 5981 2053 155 33 0 chr12 1513407 1513742 -142768747 + MER7A DNA MER2_type 3 346 0 1178 159 0 0 chr12 1514189 1514371 -142768118 + AluJb SINE Alu 129 310 -2 1725 235 94 61 chr12 1514727 1514981 -142767508 + L1MC4 LINE L1 6450 6694 -1348 2106 85 4 15 chr12 1514981 1515252 -142767237 - AluSp SINE Alu -9 304 37 1725 235 94 61 chr12 1515252 1515558 -142766931 + L1MC4 LINE L1 6694 7029 -1013 1498 210 85 33 chr12 1515863 1515915 -142766574 + L1MC4 LINE L1 7025 7073 -969 258 105 0 0 chr12 1515915 1515953 -142766536 + (TGAA)n Simple_repeat Simple_repeat 1 38 0 1498 210 85 33 chr12 1515953 1516358 -142766131 + L1MC4 LINE L1 7073 7506 -536 258 222 48 0 chr12 1516453 1516516 -142765973 + L1MC4 LINE L1 7921 7986 -56 * 568 226 195 0 chr12 1516502 1516666 -142765823 - L1MC4 LINE L1 -969 7073 6878 24 32 0 0 chr12 1516671 1516702 -142765787 + AT_rich Low_complexity Low_complexity 1 31 0 293 282 204 33 chr12 1516987 1517168 -142765321 + L3 LINE CR1 1334 1545 -32 207 0 0 0 chr12 1517409 1517432 -142765057 + (T)n Simple_repeat Simple_repeat 1 23 0 387 322 51 6 chr12 1517435 1517612 -142764877 + L3b LINE CR1 1296 1480 -103 2235 119 3 0 chr12 1517836 1518146 -142764343 + AluSq SINE Alu 1 311 -2 304 220 154 55 chr12 1518270 1518452 -142764037 + L1ME2 LINE L1 5100 5299 -847 3235 208 94 17 chr12 1518489 1519265 -142763224 + L1ME2 LINE L1 5304 6139 -25 315 0 0 0 chr12 1520148 1520183 -142762306 + (TG)n Simple_repeat Simple_repeat 2 36 0 2305 97 0 10 chr12 1520962 1521270 -142761219 - AluSc SINE Alu -4 305 1 33 25 0 0 chr12 1521353 1521393 -142761096 + AT_rich Low_complexity Low_complexity 1 40 0 2077 165 0 53 chr12 1522528 1522940 -142759549 - MLT1B LTR MaLR 0 390 1 3482 142 2 19 chr12 1523990 1524526 -142757963 - MER1A DNA MER1_type 0 527 1 2176 124 10 0 chr12 1524771 1525070 -142757419 + AluSx SINE Alu 1 302 -10 206 170 0 21 chr12 1525081 1525128 -142757361 + GA-rich Low_complexity Low_complexity 1 46 0 387 242 183 0 chr12 1525200 1525320 -142757169 - MIR3 SINE MIR -12 196 55 798 180 0 0 chr12 1527594 1527716 -142754773 + FLAM_A SINE Alu 1 122 -11 285 291 104 30 chr12 1528384 1528518 -142753971 + MIR3 SINE MIR 64 207 -1 1882 183 0 3 chr12 1528817 1529128 -142753361 + AluJb SINE Alu 1 310 -2 284 155 0 17 chr12 1529128 1529186 -142753303 + GA-rich Low_complexity Low_complexity 1 57 0 242 239 0 0 chr12 1529218 1529264 -142753225 - L2 LINE L2 -3 3310 3265 2410 94 0 10 chr12 1529470 1529777 -142752712 - AluSg SINE Alu -6 304 1 1205 132 0 0 chr12 1529933 1530100 -142752389 + FRAM SINE Alu 1 166 -10 199 328 120 8 chr12 1531748 1531873 -142750616 - L2 LINE L2 0 3272 3134 189 342 58 49 chr12 1532023 1532266 -142750223 - L2 LINE L2 -444 2870 2626 1880 167 0 16 chr12 1532299 1532432 -142750057 + AluJo SINE Alu 1 135 -177 2143 97 31 7 chr12 1532432 1532721 -142749768 + AluY SINE Alu 1 296 -15 1880 167 0 16 chr12 1532721 1532898 -142749591 + AluJo SINE Alu 135 306 -6 21 0 0 0 chr12 1532960 1532981 -142749508 + AT_rich Low_complexity Low_complexity 1 21 0 646 276 131 8 chr12 1533099 1533465 -142749024 + L1ME4a LINE L1 5507 5917 -204 185 356 26 26 chr12 1533479 1533594 -142748895 - L2 LINE L2 -995 2319 2205 365 169 24 48 chr12 1533705 1533788 -142748701 + MIR SINE MIR 181 261 -1 1444 252 122 33 chr12 1534082 1534962 -142747527 - L1ME3A LINE L1 -14 6156 5355 2494 49 14 0 chr12 1534962 1535250 -142747239 + AluY SINE Alu 1 292 -19 1444 252 122 33 chr12 1535250 1535912 -142746577 - L1ME3A LINE L1 -815 5355 4458 234 315 151 20 chr12 1535912 1536058 -142746431 - L2 LINE L2 -1400 1914 1750 24 0 0 0 chr12 1536543 1536567 -142745922 + AT_rich Low_complexity Low_complexity 1 24 0 1101 181 117 37 chr12 1537377 1537676 -142744813 - MER44D DNA MER2_type -8 601 9 305 339 39 47 chr12 1538292 1538525 -142743964 - L3 LINE CR1 -291 1286 1056 2316 99 6 6 chr12 1538884 1539197 -142743292 - AluSq SINE Alu 0 313 1 1489 188 18 70 chr12 1539199 1539465 -142743024 - L1MB8 LINE L1 0 6178 5943 2193 132 0 3 chr12 1539465 1539769 -142742720 + AluJb SINE Alu 1 303 -9 1489 188 18 70 chr12 1539769 1539943 -142742546 - L1MB8 LINE L1 -235 5943 5761 2146 120 0 13 chr12 1540128 1540444 -142742045 - AluSx SINE Alu 0 312 1 2545 54 3 0 chr12 1540474 1540768 -142741721 + AluY SINE Alu 1 295 -16 374 345 58 29 chr12 1540768 1540939 -142741550 - L1MB8 LINE L1 -2081 5727 5552 2302 79 7 23 chr12 1541022 1541327 -142741162 - AluSg SINE Alu -4 306 7 1806 173 0 26 chr12 1541333 1541639 -142740850 - AluJo SINE Alu -14 298 1 2438 105 0 0 chr12 1541648 1541953 -142740536 - AluSg SINE Alu -5 305 1 281 254 18 0 chr12 1541960 1542070 -142740419 - L1MB8 LINE L1 -2400 5408 5297 355 274 53 16 chr12 1542518 1542708 -142739781 - L1MB8 LINE L1 -1365 4781 4585 310 213 106 43 chr12 1542707 1542848 -142739641 + L1ME4a LINE L1 5939 6088 -33 * 2130 106 0 3 chr12 1542862 1543175 -142739314 - AluSx SINE Alu 0 312 1 252 0 0 0 chr12 1543823 1543851 -142738638 + (T)n Simple_repeat Simple_repeat 1 28 0 1629 171 7 50 chr12 1543873 1544171 -142738318 + AluJb SINE Alu 1 285 -27 261 256 0 31 chr12 1544176 1544305 -142738184 + GA-rich Low_complexity Low_complexity 4 128 0 2512 72 0 3 chr12 1544307 1544613 -142737876 + AluY SINE Alu 1 305 -6 731 165 0 9 chr12 1544616 1544731 -142737758 - FLAM_A SINE Alu -19 114 1 572 178 62 75 chr12 1544864 1545010 -142737479 + AluJb SINE Alu 5 148 -164 535 218 137 8 chr12 1545010 1545134 -142737355 - MIR SINE MIR -108 154 15 216 114 29 0 chr12 1545937 1545972 -142736517 + MIR SINE MIR 222 257 -5 229 303 50 42 chr12 1546258 1546377 -142736112 + MIR3 SINE MIR 9 128 -80 309 82 20 0 chr12 1547494 1547543 -142734946 + FLAM SINE Alu 84 133 0 218 227 0 0 chr12 1547846 1547890 -142734599 - L2 LINE L2 -5 3308 3265 2065 101 38 3 chr12 1549711 1549999 -142732490 + AluSx SINE Alu 1 298 -14 270 0 0 0 chr12 1549999 1550029 -142732460 + (TA)n Simple_repeat Simple_repeat 2 31 0 1750 157 3 20 chr12 1553631 1553930 -142728559 + AluJo SINE Alu 1 294 -18 346 270 86 90 chr12 1554112 1554345 -142728144 + L1MC5 LINE L1 7695 7926 -35 576 289 82 14 chr12 1554502 1554710 -142727779 - MIR SINE MIR -28 234 13 1705 157 11 0 chr12 1555260 1555527 -142726962 - AluJo SINE Alu -30 282 13 183 303 83 46 chr12 1555667 1555776 -142726713 - MIR3 SINE MIR -95 113 1 2331 105 0 9 chr12 1557710 1558025 -142724464 - AluSx SINE Alu 0 312 1 242 212 61 61 chr12 1558311 1558410 -142724079 + L2 LINE L2 3138 3236 -36 216 0 0 0 chr12 1559085 1559109 -142723380 + (TG)n Simple_repeat Simple_repeat 2 25 0 1461 101 0 55 chr12 1560368 1560586 -142721903 - AluSp SINE Alu 0 313 108 304 351 18 0 chr12 1562024 1562135 -142720354 + L2 LINE L2 3200 3312 -1 288 289 47 8 chr12 1562136 1562264 -142720225 - MIR3 SINE MIR -75 133 1 2296 195 29 67 chr12 1562320 1562360 -142720129 + L1MB3 LINE L1 5573 5613 -570 2201 110 3 10 chr12 1562360 1562661 -142719828 + AluSp SINE Alu 3 301 -12 2296 195 29 67 chr12 1562661 1563252 -142719237 + L1MB3 LINE L1 5613 6180 -3 555 190 33 109 chr12 1563281 1563492 -142718997 + L1MB4 LINE L1 5986 6180 0 1935 133 61 0 chr12 1563504 1563783 -142718706 + AluSx SINE Alu 1 296 -16 200 176 14 108 chr12 1564268 1564295 -142718194 - L3 LINE CR1 -142 1435 1407 1908 150 38 10 chr12 1564295 1564588 -142717901 - AluJb SINE Alu -11 301 1 200 176 14 108 chr12 1564588 1564634 -142717855 - L3 LINE CR1 -170 1407 1369 * 347 364 50 0 chr12 1564631 1564771 -142717718 - MIR3 SINE MIR -3 205 59 273 401 46 7 chr12 1564930 1565082 -142717407 - L3 LINE CR1 -1186 391 234 2601 43 0 3 chr12 1565106 1565408 -142717081 + AluY SINE Alu 1 301 -10 263 130 0 74 chr12 1565435 1565489 -142717000 - MER58B DNA MER1_type 0 341 292 479 234 161 2 chr12 1565490 1565645 -142716844 + MER45A DNA AcHobo 1 178 0 754 222 159 0 chr12 1565645 1565902 -142716587 - MER58B DNA MER1_type -43 298 1 237 255 0 0 chr12 1567261 1567308 -142715181 - L2 LINE L2 -4 3309 3263 4884 143 29 2 chr12 1567335 1568211 -142714278 - L1MA7 LINE L1 -2 6289 5391 2033 117 0 7 chr12 1568211 1568492 -142713997 + AluSx SINE Alu 34 312 0 2763 180 16 11 chr12 1568496 1569453 -142713036 + L1M2 LINE L1 2472 3432 -3416 1181 102 0 0 chr12 1569461 1569618 -142712871 + AluSp/q SINE Alu 155 311 -2 5673 126 22 4 chr12 1569620 1570367 -142712122 + L1MA4A LINE L1 5315 6084 -219 2488 67 0 16 chr12 1570367 1570680 -142711809 + AluY SINE Alu 1 308 -3 5673 126 22 4 chr12 1570680 1570904 -142711585 + L1MA4A LINE L1 6084 6303 0 237 290 93 19 chr12 1571243 1571350 -142711139 + MIR SINE MIR 117 231 -31 3273 164 18 37 chr12 1571510 1572250 -142710239 - L1MD2 LINE L1 -456 5903 5175 1374 210 26 11 chr12 1572252 1572604 -142709885 - L1MD2 LINE L1 -1007 5139 4783 1838 126 3 99 chr12 1572615 1572949 -142709540 - AluSx SINE Alu -10 302 1 2632 158 55 2 chr12 1573142 1573666 -142708823 - L1MB3 LINE L1 -1 6182 5631 574 264 34 0 chr12 1574313 1574461 -142708028 + MIR SINE MIR 48 200 -62 2047 124 0 50 chr12 1576604 1576927 -142705562 + AluSx SINE Alu 1 307 -5 1011 182 6 0 chr12 1577264 1577434 -142705055 - AluJb SINE Alu -5 307 137 1983 107 66 17 chr12 1577530 1577819 -142704670 - AluSc SINE Alu -5 304 2 1259 169 76 76 chr12 1577928 1578207 -142704282 + MER2 DNA MER2_type 1 282 -62 2093 130 0 46 chr12 1578207 1578345 -142704144 + AluSx SINE Alu 1 144 -168 2065 108 45 3 chr12 1578345 1578633 -142703856 + AluSx SINE Alu 1 300 -12 2093 130 0 46 chr12 1578633 1578817 -142703672 + AluSx SINE Alu 144 308 -4 1259 169 76 76 chr12 1578817 1578881 -142703608 + MER2 DNA MER2_type 281 344 0 2367 82 7 0 chr12 1579131 1579424 -142703065 - AluSp SINE Alu -18 295 1 229 307 118 8 chr12 1580691 1580818 -142701671 - MIR3 SINE MIR -38 170 30 233 267 44 22 chr12 1580869 1580959 -142701530 + L2 LINE L2 3140 3231 -82 831 108 0 58 chr12 1581185 1581324 -142701165 - FLAM_C SINE Alu -2 131 1 349 314 36 67 chr12 1581585 1581639 -142700850 - MIR SINE MIR -3 259 205 1965 148 0 16 chr12 1581639 1581942 -142700547 - AluJb SINE Alu -14 298 1 349 314 36 67 chr12 1581942 1582081 -142700408 - MIR SINE MIR -57 205 72 1938 123 63 26 chr12 1582260 1582611 -142699878 - THE1B LTR MaLR 0 364 1 2167 148 0 0 chr12 1582617 1582921 -142699568 + AluJb SINE Alu 8 311 -1 2519 56 0 3 chr12 1583427 1583729 -142698760 - AluY SINE Alu -10 301 1 245 164 16 33 chr12 1584148 1584209 -142698280 + CT-rich Low_complexity Low_complexity 4 63 0 2094 99 82 0 chr12 1584849 1585131 -142697358 + AluSq SINE Alu 1 305 -8 237 208 26 26 chr12 1586695 1586772 -142695717 + G-rich Low_complexity Low_complexity 4 80 0 31 26 0 0 chr12 1587161 1587199 -142695290 + GC_rich Low_complexity Low_complexity 1 38 0 43 92 0 0 chr12 1587259 1587379 -142695110 + GC_rich Low_complexity Low_complexity 1 120 0 183 100 0 0 chr12 1587433 1587463 -142695026 + (CCG)n Simple_repeat Simple_repeat 1 30 0 21 57 0 0 chr12 1587528 1587563 -142694926 + GC_rich Low_complexity Low_complexity 1 35 0 1960 143 6 37 chr12 1590870 1591192 -142691297 - AluJb SINE Alu 0 312 1 306 299 0 0 chr12 1591196 1591273 -142691216 + MIR3 SINE MIR 125 201 -7 433 281 100 38 chr12 1592427 1592637 -142689852 + MIR SINE MIR 28 250 -12 637 67 79 0 chr12 1592922 1593011 -142689478 + AluS SINE Alu 2 97 -215 1318 182 10 0 chr12 1593017 1593226 -142689263 - AluJo SINE Alu -101 211 1 820 272 313 5 chr12 1593226 1593354 -142689135 + L2 LINE L2 1983 2070 -1244 1847 184 36 0 chr12 1593354 1593690 -142688799 + MER7A DNA MER2_type 1 346 0 820 272 313 5 chr12 1593690 1594219 -142688270 + L2 LINE L2 2070 2843 -471 667 278 46 49 chr12 1594211 1594495 -142687994 + L2 LINE L2 3030 3312 -1 * 1700 166 42 7 chr12 1594553 1594842 -142687647 + AluJo SINE Alu 1 299 -13 1004 204 11 0 chr12 1595436 1595622 -142686867 - MER20 DNA MER1_type -3 216 29 392 320 76 31 chr12 1596079 1596304 -142686185 + MIR SINE MIR 20 254 -8 615 212 97 6 chr12 1596720 1596885 -142685604 + MER104 DNA MER2_type 1 180 0 2475 71 3 0 chr12 1597698 1597995 -142684494 + AluSc SINE Alu 1 298 -11 371 204 150 84 chr12 1598071 1598238 -142684251 + MIR SINE MIR 85 262 0 2294 106 0 16 chr12 1598604 1598907 -142683582 + AluSx SINE Alu 1 298 -14 390 295 8 0 chr12 1599179 1599196 -142683293 - L1MA10 LINE L1 0 6334 6318 1131 221 26 75 chr12 1599196 1599545 -142682944 - L1ME2 LINE L1 -9 6155 5824 1175 161 19 10 chr12 1599546 1599732 -142682757 - AluJo SINE Alu -5 307 117 207 0 0 0 chr12 1599732 1599755 -142682734 + (TTA)n Simple_repeat Simple_repeat 2 24 0 1175 161 19 10 chr12 1599755 1599773 -142682716 - AluJo SINE Alu -195 117 101 1739 186 48 55 chr12 1599776 1600027 -142682462 - L1MC4a LINE L1 -73 7735 7487 1902 95 0 4 chr12 1600027 1600270 -142682219 - AluSx SINE Alu -16 296 55 1739 186 48 55 chr12 1600270 1600476 -142682013 - L1MC4a LINE L1 -321 7487 7281 862 268 124 29 chr12 1600553 1601030 -142681459 - L1MEc LINE L1 -4323 2073 1552 923 145 0 14 chr12 1601045 1601183 -142681306 + AluJb SINE Alu 1 136 -176 2390 87 10 0 chr12 1601183 1601482 -142681007 + AluY SINE Alu 1 302 -9 993 206 10 20 chr12 1601854 1602058 -142680431 + AluJo SINE Alu 100 301 -11 2431 86 0 0 chr12 1602236 1602537 -142679952 - AluY SINE Alu -10 301 1 283 313 50 0 chr12 1604320 1604419 -142678070 + MIR SINE MIR 70 173 -89 872 214 34 15 chr12 1604419 1604625 -142677864 + MER119 DNA MER1_type 356 565 -18 543 330 18 0 chr12 1604625 1604843 -142677646 - HsTC2c DNA Tc2 -6 723 502 2056 115 100 54 chr12 1604843 1605195 -142677294 + MSTA LTR MaLR 1 335 -93 2360 78 10 0 chr12 1605195 1605491 -142676998 + AluY SINE Alu 1 299 -12 180 0 0 0 chr12 1605496 1605516 -142676973 + (TAAA)n Simple_repeat Simple_repeat 2 21 0 2056 115 100 54 chr12 1605516 1605566 -142676923 + MSTA LTR MaLR 338 428 0 8830 129 40 42 chr12 1605568 1606052 -142676437 + MSTA-int LTR MaLR 3 486 -1094 2249 129 3 3 chr12 1606052 1606362 -142676127 + AluSx SINE Alu 1 310 -2 8830 129 40 42 chr12 1606362 1607458 -142675031 + MSTA-int LTR MaLR 486 1580 0 1707 119 116 12 chr12 1607460 1607779 -142674710 + MSTA LTR MaLR 3 354 -74 1098 237 93 11 chr12 1607809 1608164 -142674325 - HsTC2c DNA Tc2 -267 462 79 222 246 116 0 chr12 1608691 1608760 -142673729 - L2 LINE L2 -1527 1787 1711 342 246 73 9 chr12 1609594 1609704 -142672785 + MER103 DNA DNA 2 118 -48 181 338 68 38 chr12 1610438 1610571 -142671918 + L2 LINE L2 3136 3272 0 2405 99 0 0 chr12 1611463 1611765 -142670724 - AluSq SINE Alu -11 302 1 880 114 19 25 chr12 1611952 1612110 -142670379 - L1MB3 LINE L1 -1 6182 6026 267 191 79 0 chr12 1612137 1612200 -142670289 - L1MB3 LINE L1 -161 6022 5955 1973 135 3 21 chr12 1612231 1612519 -142669970 - AluJo SINE Alu -21 291 9 650 146 50 70 chr12 1612527 1612646 -142669843 - L1MB4 LINE L1 -214 5966 5879 2534 61 0 0 chr12 1612646 1612939 -142669550 - AluY SINE Alu -18 293 1 650 146 50 70 chr12 1612939 1613053 -142669436 - L1MB4 LINE L1 -301 5879 5764 3990 133 16 6 chr12 1613091 1613782 -142668707 - L1MA7 LINE L1 0 6291 5594 1199 226 80 23 chr12 1613786 1614087 -142668402 - MLT1A1 LTR MaLR -47 318 1 1661 149 91 84 chr12 1614087 1614171 -142668318 - MLT1A1-int LTR MaLR 0 1735 1653 2412 86 10 0 chr12 1614171 1614475 -142668014 - AluSp SINE Alu -6 307 1 2424 82 13 0 chr12 1614475 1614779 -142667710 - AluSp SINE Alu -5 308 1 1661 149 91 84 chr12 1614779 1615109 -142667380 - MLT1A1-int LTR MaLR -81 1654 1317 281 196 333 0 chr12 1615208 1615310 -142667179 + L2 LINE L2 3137 3272 0 2580 52 0 0 chr12 1615426 1615717 -142666772 - AluY SINE Alu -20 291 1 246 32 0 0 chr12 1615926 1615957 -142666532 + (CAAAA)n Simple_repeat Simple_repeat 2 32 0 218 286 18 0 chr12 1616370 1616426 -142666063 - L2 LINE L2 -6 3266 3210 1187 193 42 8 chr12 1616515 1616774 -142665715 - MLT1C LTR MaLR 0 467 200 389 184 13 0 chr12 1616830 1616906 -142665583 - MLT1C LTR MaLR -390 77 1 182 254 115 111 chr12 1616942 1616985 -142665504 + L2 LINE L2 3055 3096 -176 2073 142 0 3 chr12 1616985 1617281 -142665208 - AluSg SINE Alu -15 295 1 182 254 115 111 chr12 1617281 1617454 -142665035 + L2 LINE L2 3096 3272 0 267 103 0 0 chr12 1617454 1617493 -142664996 + (TGGA)n Simple_repeat Simple_repeat 2 40 0 478 255 20 33 chr12 1617835 1617988 -142664501 - MER5B DNA MER1_type -26 152 2 427 220 44 0 chr12 1617989 1618080 -142664409 - MIR3 SINE MIR -48 160 66 377 303 16 16 chr12 1618250 1618372 -142664117 + L2 LINE L2 3191 3312 -1 * 473 286 18 75 chr12 1618351 1618493 -142663996 - MIR SINE MIR 0 262 134 2253 98 14 0 chr12 1618493 1618812 -142663677 + AluSx SINE Alu 1 323 0 473 286 18 75 chr12 1618812 1618894 -142663595 - MIR SINE MIR -128 134 49 477 0 0 0 chr12 1619197 1619250 -142663239 + (TG)n Simple_repeat Simple_repeat 2 54 0 22 0 0 0 chr12 1619899 1619921 -142662568 + AT_rich Low_complexity Low_complexity 1 22 0 850 172 14 0 chr12 1619922 1620067 -142662422 - FRAM SINE Alu -25 151 5 272 325 158 17 chr12 1620824 1620944 -142661545 + MIR SINE MIR 16 152 -56 800 201 6 13 chr12 1620945 1621104 -142661385 + FRAM SINE Alu 1 158 -8 2198 130 0 0 chr12 1621106 1621441 -142661048 + AluSq SINE Alu 1 313 0 266 197 21 14 chr12 1622779 1622861 -142659628 + (TA)n Simple_repeat Simple_repeat 1 82 0 * 6746 163 90 38 chr12 1622857 1623631 -142658858 + L1MCa LINE L1 117 849 -5691 1942 93 3 87 chr12 1623631 1623963 -142658526 + AluSx SINE Alu 1 304 -8 6746 163 90 38 chr12 1623963 1625131 -142657358 + L1MCa LINE L1 849 2262 -4278 1395 74 26 0 chr12 1625131 1625321 -142657168 + AluSg/x SINE Alu 100 294 -16 391 188 0 0 chr12 1625321 1625390 -142657099 + L1MCa LINE L1 2582 2650 -3890 183 184 0 0 chr12 1625730 1625768 -142656721 + CT-rich Low_complexity Low_complexity 1 38 0 2467 53 0 0 chr12 1625845 1626149 -142656340 - AluY SINE Alu -6 305 2 777 256 58 5 chr12 1626573 1626883 -142655606 - LTR16C LTR ERVL 0 491 126 2377 74 3 3 chr12 1627646 1627958 -142654531 - AluSp SINE Alu -1 312 1 293 311 0 0 chr12 1628301 1628375 -142654114 - L2 LINE L2 -6 3307 3234 577 234 38 13 chr12 1628678 1628836 -142653653 - L1MA10 LINE L1 -2 6332 6171 381 305 198 59 chr12 1629093 1629735 -142652754 - L2 LINE L2 -481 2833 2103 * 411 303 135 19 chr12 1629683 1629891 -142652598 + L2 LINE L2 3022 3253 -19 223 306 128 37 chr12 1630061 1630173 -142652316 - L2 LINE L2 -246 3026 2926 2365 85 0 0 chr12 1630173 1630479 -142652010 + AluSp SINE Alu 1 306 -7 223 306 128 37 chr12 1630479 1630678 -142651811 - L2 LINE L2 -346 2926 2686 463 276 17 22 chr12 1630794 1630975 -142651514 + G-rich Low_complexity Low_complexity 1 180 0 22 0 0 0 chr12 1631353 1631375 -142651114 + AT_rich Low_complexity Low_complexity 1 22 0 247 133 22 78 chr12 1631756 1631846 -142650643 + (TCTA)n Simple_repeat Simple_repeat 2 86 0 195 380 0 0 chr12 1633214 1633285 -142649204 + L2 LINE L2 3241 3311 -2 2059 114 7 0 chr12 1634809 1635107 -142647382 + AluSx SINE Alu 1 300 -12 2084 99 14 3 chr12 1635784 1636077 -142646412 + AluSx SINE Alu 1 296 -16 1906 132 7 3 chr12 1638293 1638721 -142643768 + AluSx SINE Alu 1 429 0 32 0 0 0 chr12 1639560 1639592 -142642897 + AT_rich Low_complexity Low_complexity 1 32 0 1697 124 4 26 chr12 1640534 1640807 -142641682 + AluJo SINE Alu 22 288 -24 2460 50 0 0 chr12 1641567 1641864 -142640625 + AluY SINE Alu 1 297 -14 823 132 0 0 chr12 1642705 1642826 -142639663 + FRAM SINE Alu 43 163 -13 685 182 25 0 chr12 1642832 1642953 -142639536 - FLAM_A SINE Alu -9 124 1 2357 62 3 19 chr12 1643406 1643715 -142638774 + AluSp SINE Alu 1 304 -9 1928 127 3 35 chr12 1645556 1645870 -142636619 + AluJb SINE Alu 1 304 -8 234 156 0 0 chr12 1645909 1645954 -142636535 + GA-rich Low_complexity Low_complexity 4 48 0 384 248 199 28 chr12 1645968 1646109 -142636380 + MIR SINE MIR 46 210 -52 307 41 41 0 chr12 1648632 1648681 -142633808 + (TA)n Simple_repeat Simple_repeat 2 52 0 243 0 0 0 chr12 1650607 1650634 -142631855 + (CCG)n Simple_repeat Simple_repeat 2 28 0 201 288 25 25 chr12 1650647 1650765 -142631724 + C-rich Low_complexity Low_complexity 6 123 0 285 221 35 9 chr12 1650819 1650932 -142631557 + (CCG)n Simple_repeat Simple_repeat 3 118 0 39 50 0 0 chr12 1650933 1650993 -142631496 + GC_rich Low_complexity Low_complexity 1 60 0 25 95 0 0 chr12 1651240 1651314 -142631175 + GC_rich Low_complexity Low_complexity 1 74 0 310 276 23 11 chr12 1653335 1653422 -142629067 + MIR3 SINE MIR 106 193 -15 459 0 0 0 chr12 1653963 1654014 -142628475 + (TA)n Simple_repeat Simple_repeat 2 52 0 1969 113 0 17 chr12 1654071 1654372 -142628117 + AluSx SINE Alu 1 296 -16 199 253 88 66 chr12 1654384 1654475 -142628014 + L2 LINE L2 3180 3272 0 1504 171 23 7 chr12 1654725 1655012 -142627477 + L1MB2 LINE L1 5280 5558 -625 856 132 0 23 chr12 1655013 1655142 -142627347 + FLAM_C SINE Alu 1 126 -17 3348 158 14 11 chr12 1655143 1655706 -142626783 + L1MB2 LINE L1 5557 6121 -50 1080 66 7 0 chr12 1655706 1655842 -142626647 + AluSp SINE Alu 1 137 -176 2217 104 3 0 chr12 1655843 1656151 -142626338 + AluSp SINE Alu 4 312 -1 255 130 65 0 chr12 1656151 1656197 -142626292 + L1MB2 LINE L1 6121 6169 -2 226 275 0 62 chr12 1656430 1656510 -142625979 + MER94 DNA DNA 2 76 -58 1533 149 30 37 chr12 1656821 1657116 -142625373 + AluJo SINE Alu 1 293 -19 1701 144 0 14 chr12 1657564 1657841 -142624648 + AluJb SINE Alu 1 273 -39 530 233 83 79 chr12 1658157 1658385 -142624104 + MIR SINE MIR 34 262 0 2163 92 3 3 chr12 1658528 1658823 -142623666 + AluSg SINE Alu 1 295 -15 2154 105 0 0 chr12 1659047 1659341 -142623148 - AluSx SINE Alu -18 294 1 269 234 0 4 chr12 1659371 1659465 -142623024 - MER5A DNA MER1_type -2 187 57 575 327 31 13 chr12 1659705 1659931 -142622558 + MIR SINE MIR 7 236 -26 738 288 60 44 chr12 1659938 1660188 -142622301 - MIR SINE MIR -8 254 1 2171 150 35 8 chr12 1660263 1660348 -142622141 + L1MA5 LINE L1 5889 5970 -330 1778 134 3 3 chr12 1660348 1660631 -142621858 + AluJo SINE Alu 6 288 -24 2171 150 35 8 chr12 1660631 1660946 -142621543 + L1MA5 LINE L1 5970 6300 0 408 175 12 6 chr12 1661232 1661398 -142621091 + (TG)n Simple_repeat Simple_repeat 1 167 0 193 143 20 31 chr12 1661421 1661519 -142620970 + (TG)n Simple_repeat Simple_repeat 1 97 0 419 191 6 0 chr12 1661548 1661710 -142620779 + (TG)n Simple_repeat Simple_repeat 1 163 0 2132 95 3 0 chr12 1663087 1663372 -142619117 + AluSx SINE Alu 1 286 -26 234 81 0 0 chr12 1663374 1663411 -142619078 + (CTAA)n Simple_repeat Simple_repeat 3 39 0 2182 111 10 0 chr12 1663487 1663794 -142618695 + AluSg SINE Alu 1 310 0 2171 82 0 30 chr12 1664123 1664426 -142618063 - AluSx SINE Alu -18 294 1 1694 124 16 60 chr12 1665538 1665853 -142616636 - AluJb SINE Alu -11 301 1 1817 162 0 0 chr12 1666013 1666355 -142616134 - AluJo SINE Alu 0 312 1 454 171 36 45 chr12 1666451 1666562 -142615927 + L1ME3 LINE L1 6052 6161 -1 22 0 0 0 chr12 1666563 1666585 -142615904 + AT_rich Low_complexity Low_complexity 1 22 0 783 171 0 0 chr12 1666970 1667087 -142615402 + FLAM_C SINE Alu 1 117 -16 25 31 0 0 chr12 1667087 1667119 -142615370 + AT_rich Low_complexity Low_complexity 1 32 0 2437 69 0 0 chr12 1667540 1667844 -142614645 - AluY SINE Alu -7 304 1 343 284 90 45 chr12 1669038 1669172 -142613317 + L1ME LINE L1 5353 5492 -629 428 303 39 3 chr12 1669338 1669479 -142613010 - MIR3 SINE MIR -5 203 57 1788 139 7 3 chr12 1669700 1669987 -142612502 - AluJo SINE Alu -24 288 1 863 291 54 31 chr12 1670153 1670541 -142611948 - MLT1J2 LTR MaLR 0 450 54 214 293 48 85 chr12 1671181 1671369 -142611120 + L2 LINE L2 2613 2793 -521 257 109 22 0 chr12 1671440 1671486 -142611003 + CT-rich Low_complexity Low_complexity 2 48 0 996 159 63 11 chr12 1672280 1672469 -142610020 + MER3 DNA MER1_type 8 206 -3 231 311 14 14 chr12 1672570 1672644 -142609845 - MIR SINE MIR -3 259 186 26 0 0 0 chr12 1673752 1673778 -142608711 + AT_rich Low_complexity Low_complexity 1 26 0 1919 149 20 7 chr12 1673815 1674110 -142608379 + AluJb SINE Alu 13 311 -1 1907 146 7 10 chr12 1674307 1674602 -142607887 + AluJo SINE Alu 1 294 -18 879 258 47 86 chr12 1676493 1676981 -142605508 - L1ME3A LINE L1 0 6170 5702 1192 137 0 6 chr12 1676981 1677156 -142605333 - AluSc SINE Alu -4 305 132 2351 82 3 0 chr12 1677156 1677447 -142605042 - AluSc SINE Alu -13 296 5 252 403 26 0 chr12 1677587 1677741 -142604748 - L2 LINE L2 -740 2574 2417 1689 164 60 11 chr12 1678014 1678295 -142604194 - AluJo SINE Alu -17 295 1 1733 31 0 0 chr12 1678555 1678748 -142603741 - AluY SINE Alu -6 305 113 276 331 126 38 chr12 1679121 1679384 -142603105 - L2 LINE L2 -1 3312 3027 219 309 22 116 chr12 1679529 1679635 -142602854 - L2 LINE L2 -474 2840 2756 2637 61 0 0 chr12 1679635 1679945 -142602544 - AluY SINE Alu -1 310 1 219 309 22 116 chr12 1679945 1680019 -142602470 - L2 LINE L2 -558 2756 2677 2256 96 33 0 chr12 1680555 1680858 -142601631 + AluSq SINE Alu 1 313 0 469 279 137 5 chr12 1680920 1681110 -142601379 + MIR SINE MIR 48 262 0 2290 125 3 0 chr12 1682102 1682413 -142600076 - AluSx SINE Alu 0 312 1 1891 151 68 0 chr12 1682417 1682709 -142599780 - AluJo SINE Alu 0 312 1 2382 95 3 0 chr12 1682718 1683013 -142599476 - AluSp SINE Alu -17 296 1 2450 68 0 3 chr12 1683020 1683315 -142599174 - AluY SINE Alu -17 294 1 245 345 117 34 chr12 1683384 1683648 -142598841 - L2 LINE L2 -1 3312 3027 340 225 0 56 chr12 1684366 1684455 -142598034 + L2 LINE L2 3230 3313 0 1846 125 4 8 chr12 1684611 1684875 -142597614 - AluSx SINE Alu -16 296 34 218 192 19 0 chr12 1685360 1685412 -142597077 + (TG)n Simple_repeat Simple_repeat 1 53 0 21 36 0 0 chr12 1685492 1685520 -142596969 + AT_rich Low_complexity Low_complexity 1 28 0 204 184 41 20 chr12 1688990 1689039 -142593450 + L2 LINE L2 3221 3270 -2 895 108 0 8 chr12 1690382 1690502 -142591987 + FLAM_C SINE Alu 9 127 -16 604 313 102 16 chr12 1691765 1692011 -142590478 + L3 LINE CR1 1160 1426 -151 2510 157 50 18 chr12 1692613 1692948 -142589541 - L1MB7 LINE L1 -8 6176 5854 396 0 0 0 chr12 1692948 1692992 -142589497 + (TA)n Simple_repeat Simple_repeat 1 44 0 1796 161 10 30 chr12 1692993 1693153 -142589336 - AluJo SINE Alu -14 298 136 279 0 0 0 chr12 1693153 1693184 -142589305 + (TTTTG)n Simple_repeat Simple_repeat 1 31 0 2109 106 29 0 chr12 1693184 1693458 -142589031 - AluSq SINE Alu -31 282 1 1796 161 10 30 chr12 1693458 1693600 -142588889 - AluJo SINE Alu -174 138 1 2510 157 50 18 chr12 1693600 1693777 -142588712 - L1MB7 LINE L1 -329 5855 5645 840 115 56 133 chr12 1693778 1693906 -142588583 - Tigger1 DNA MER2_type -1 2417 2313 2262 84 0 45 chr12 1693906 1694214 -142588275 + AluSg SINE Alu 1 294 -16 840 115 56 133 chr12 1694214 1694319 -142588170 - Tigger1 DNA MER2_type -105 2313 2202 740 151 24 78 chr12 1694308 1694417 -142588072 - Tigger1 DNA MER2_type -2261 157 57 * 2176 96 7 0 chr12 1694417 1694727 -142587762 + AluY SINE Alu 1 312 0 740 151 24 78 chr12 1694727 1694782 -142587707 - Tigger1 DNA MER2_type -2361 57 1 944 191 87 48 chr12 1694786 1695016 -142587473 - L1MB7 LINE L1 -542 5642 5404 2502 55 3 3 chr12 1695578 1695887 -142586602 - AluY SINE Alu -2 309 1 310 321 36 0 chr12 1695887 1695999 -142586490 + L3 LINE CR1 1282 1397 -180 188 0 74 0 chr12 1696628 1696655 -142585834 + (TTTTC)n Simple_repeat Simple_repeat 2 30 0 2392 94 0 3 chr12 1697553 1697852 -142584637 + AluSx SINE Alu 1 298 -14 2246 101 26 13 chr12 1697971 1698279 -142584210 + AluSx SINE Alu 1 312 0 2469 67 3 7 chr12 1699816 1700115 -142582374 - AluSp SINE Alu -14 299 2 180 77 0 0 chr12 1700137 1700163 -142582326 + (T)n Simple_repeat Simple_repeat 1 26 0 209 169 17 0 chr12 1700220 1700279 -142582210 + (TA)n Simple_repeat Simple_repeat 1 60 0 259 225 42 14 chr12 1700838 1700909 -142581580 + MIR SINE MIR 81 153 -109 192 77 0 0 chr12 1701678 1701704 -142580785 + (TTTTG)n Simple_repeat Simple_repeat 3 28 0 979 173 0 0 chr12 1701707 1701863 -142580626 - AluJo SINE Alu -30 282 127 23 54 0 0 chr12 1702751 1702788 -142579701 + AT_rich Low_complexity Low_complexity 1 37 0 2169 136 3 0 chr12 1704551 1704846 -142577643 + AluSx SINE Alu 1 296 -16 211 344 21 11 chr12 1705447 1705540 -142576949 - MIR3 SINE MIR -7 201 108 335 271 164 8 chr12 1705547 1705669 -142576820 - MER5A DNA MER1_type -35 154 14 393 70 0 0 chr12 1706553 1706610 -142575879 + (TG)n Simple_repeat Simple_repeat 2 58 0 183 80 0 0 chr12 1707362 1707387 -142575102 + (GA)n Simple_repeat Simple_repeat 2 26 0 470 255 26 39 chr12 1707669 1707822 -142574667 + L2 LINE L2 3163 3313 0 342 0 0 0 chr12 1708054 1708092 -142574397 + (TC)n Simple_repeat Simple_repeat 1 38 0 2416 75 0 19 chr12 1708850 1709168 -142573321 + AluSq SINE Alu 1 312 -1 21 36 0 0 chr12 1709510 1709538 -142572951 + AT_rich Low_complexity Low_complexity 1 28 0 2015 103 3 59 chr12 1709538 1709858 -142572631 + AluSx SINE Alu 1 302 -10 501 271 112 0 chr12 1710119 1710289 -142572200 - MIR SINE MIR 0 262 74 1749 157 13 41 chr12 1710508 1710653 -142571836 + AluJo SINE Alu 1 149 -163 1867 152 7 24 chr12 1710653 1710949 -142571540 + AluJo SINE Alu 1 291 -21 1749 157 13 41 chr12 1710949 1711121 -142571368 + AluJo SINE Alu 149 309 -3 727 211 0 0 chr12 1712251 1712379 -142570110 + FLAM_C SINE Alu 2 129 -14 299 257 9 55 chr12 1712382 1712491 -142569998 - MER5B DNA MER1_type -58 120 17 677 166 72 122 chr12 1712677 1712825 -142569664 + FAM SINE Alu 4 143 -168 2033 109 46 7 chr12 1712825 1713108 -142569381 - AluSg SINE Alu -16 294 1 677 166 72 122 chr12 1713108 1713140 -142569349 + FAM SINE Alu 143 175 0 1554 209 7 7 chr12 1713788 1714090 -142568399 - AluJo SINE Alu -10 302 1 901 156 0 7 chr12 1714091 1714232 -142568257 - FLAM_C SINE Alu -1 142 3 2370 106 3 0 chr12 1714645 1714956 -142567533 - AluSx SINE Alu 0 312 1 1018 172 0 0 chr12 1715353 1715510 -142566979 + FRAM SINE Alu 1 157 -19 2409 88 0 13 chr12 1715883 1716189 -142566300 - AluSx SINE Alu -10 302 1 514 255 127 0 chr12 1717123 1717280 -142565209 - MER69A DNA AcHobo 0 177 1 180 188 24 12 chr12 1718294 1718379 -142564110 + (CGGGG)n Simple_repeat Simple_repeat 5 90 0 403 98 0 109 chr12 1718761 1718944 -142563545 + (CCCCCT)n Simple_repeat Simple_repeat 5 167 0 417 97 0 113 chr12 1721456 1721651 -142560838 + (CCCCCT)n Simple_repeat Simple_repeat 5 177 0 294 241 0 25 chr12 1721654 1721733 -142560756 + C-rich Low_complexity Low_complexity 5 81 0 243 339 16 31 chr12 1722508 1722635 -142559854 + L2 LINE L2 3188 3312 -1 862 171 13 4 chr12 1722635 1722869 -142559620 + GA-rich Low_complexity Low_complexity 1 236 0 2233 120 3 0 chr12 1723240 1723549 -142558940 + AluSg SINE Alu 1 310 0 2162 142 0 0 chr12 1723566 1723875 -142558614 + AluJb SINE Alu 1 309 -3 408 231 112 28 chr12 1723913 1724056 -142558433 - L1MC4 LINE L1 -1393 6649 6495 863 262 86 92 chr12 1724482 1724692 -142557797 + L1MB3 LINE L1 5131 5341 -780 2407 80 3 3 chr12 1724692 1724992 -142557497 - AluSp SINE Alu -13 300 1 863 262 86 92 chr12 1724992 1725432 -142557057 + L1MB3 LINE L1 5341 5785 -336 478 134 56 14 chr12 1726070 1726212 -142556277 + (CAGAGA)n Simple_repeat Simple_repeat 3 150 0 1749 160 0 17 chr12 1726362 1726662 -142555827 + AluJb SINE Alu 1 295 -17 1498 169 31 79 chr12 1726821 1727132 -142555357 + L1MB3 LINE L1 5817 6120 -63 1399 161 13 95 chr12 1727132 1727448 -142555041 - AluJo SINE Alu -22 290 1 1498 169 31 79 chr12 1727448 1727510 -142554979 + L1MB3 LINE L1 6120 6183 0 2139 116 7 7 chr12 1728668 1728970 -142553519 - AluSg SINE Alu -8 302 1 391 294 8 8 chr12 1730482 1730608 -142551881 + L1MC5 LINE L1 7721 7846 -115 1854 166 3 0 chr12 1730624 1730925 -142551564 + AluJb SINE Alu 1 302 -10 2556 60 0 0 chr12 1730970 1731272 -142551217 + AluY SINE Alu 1 302 -9 2345 94 0 0 chr12 1731468 1731766 -142550723 - AluSx SINE Alu -14 298 1 439 264 0 9 chr12 1731769 1731879 -142550610 + MIR3 SINE MIR 81 189 -19 2423 92 0 0 chr12 1731962 1732266 -142550223 - AluSx SINE Alu -8 304 1 3399 178 46 24 chr12 1732266 1732400 -142550089 - L1M4 LINE L1 -725 5453 5323 2005 125 7 0 chr12 1732400 1732705 -142549784 - AluSg SINE Alu 0 307 1 3399 178 46 24 chr12 1732705 1733394 -142549095 - L1M4 LINE L1 -855 5323 4613 495 233 67 0 chr12 1733433 1733553 -142548936 + L2 LINE L2 3183 3310 -3 2220 103 3 0 chr12 1733662 1733954 -142548535 - AluSx SINE Alu -17 295 3 1690 129 4 16 chr12 1734001 1734257 -142548232 + AluSx SINE Alu 44 296 -16 2228 103 7 10 chr12 1734259 1734569 -142547920 + AluY SINE Alu 1 309 -2 481 226 147 49 chr12 1734598 1734802 -142547687 - L1ME LINE L1 -416 5729 5506 581 241 133 95 chr12 1734938 1735395 -142547094 - L1MEd LINE L1 -4730 1580 1026 2268 102 3 0 chr12 1735395 1735689 -142546800 - AluSx SINE Alu -17 295 1 581 241 133 95 chr12 1735689 1735894 -142546595 - L1MEd LINE L1 -5284 1026 830 303 273 0 26 chr12 1735959 1736036 -142546453 - L1MEd LINE L1 -5603 516 442 382 253 26 89 chr12 1736063 1736157 -142546332 - L1MEd LINE L1 -5918 201 103 1533 185 52 11 chr12 1736157 1736443 -142546046 - AluJo SINE Alu -14 298 1 2244 99 0 0 chr12 1736447 1736741 -142545748 - AluSg SINE Alu -16 294 1 382 253 26 89 chr12 1736741 1736831 -142545658 - L1MEd LINE L1 -6019 100 24 462 85 0 0 chr12 1736973 1737032 -142545457 + Alu SINE Alu 234 292 -18 312 278 196 21 chr12 1737223 1737417 -142545072 - L2 LINE L2 -494 2820 2593 2342 99 0 0 chr12 1737939 1738242 -142544247 - AluSg SINE Alu -7 303 1 201 131 66 16 chr12 1738569 1738630 -142543859 + (TTATA)n Simple_repeat Simple_repeat 4 67 0 293 273 0 13 chr12 1738711 1738788 -142543701 - L2 LINE L2 -1 3271 3196 2274 94 3 0 chr12 1738864 1739152 -142543337 + AluSx SINE Alu 1 289 -23 1656 165 14 30 chr12 1739254 1739551 -142542938 - AluJo SINE Alu -20 292 1 1156 247 8 8 chr12 1739836 1740087 -142542402 + MIR SINE MIR 12 262 0 675 198 0 95 chr12 1741133 1741239 -142541250 - MER45A DNA AcHobo -1413 168 85 2210 117 0 3 chr12 1741239 1741547 -142540942 + AluSq SINE Alu 1 307 -6 675 198 0 95 chr12 1741547 1741625 -142540864 - MER45A DNA AcHobo -1496 85 1 215 294 110 18 chr12 1741649 1741725 -142540764 - MER5B DNA MER1_type -26 152 62 1913 125 69 0 chr12 1741725 1742014 -142540475 - AluJo SINE Alu -3 309 1 215 294 110 18 chr12 1742014 1742046 -142540443 - MER5B DNA MER1_type -116 62 34 1994 124 7 3 chr12 1742114 1742422 -142540067 - AluY SINE Alu 0 309 1 1931 141 0 20 chr12 1742424 1742723 -142539766 - AluJo SINE Alu -19 293 1 1681 149 67 0 chr12 1742728 1743017 -142539472 - AluSx SINE Alu 0 307 1 3531 198 61 35 chr12 1744085 1744117 -142538372 + L1ME2 LINE L1 5254 5284 -880 2186 138 0 0 chr12 1744117 1744422 -142538067 + AluSx SINE Alu 1 305 -7 3531 198 61 35 chr12 1744422 1744859 -142537630 + L1ME2 LINE L1 5284 5708 -456 1822 183 0 0 chr12 1744859 1745165 -142537324 + AluJo SINE Alu 5 310 -2 3531 198 61 35 chr12 1745165 1745573 -142536916 + L1ME2 LINE L1 5708 6155 -9 2598 51 0 3 chr12 1746049 1746360 -142536129 - AluY SINE Alu -1 310 1 867 158 47 0 chr12 1746989 1747116 -142535373 + FLAM_C SINE Alu 1 133 0 1151 126 6 0 chr12 1747171 1747330 -142535159 - FRAM SINE Alu -2 164 5 2295 100 3 3 chr12 1748143 1748443 -142534046 - AluSx SINE Alu -12 300 1 202 224 30 15 chr12 1749969 1750036 -142532453 + (CGG)n Simple_repeat Simple_repeat 1 68 0 186 43 0 0 chr12 1750055 1750078 -142532411 + (CGG)n Simple_repeat Simple_repeat 3 25 0 218 244 0 0 chr12 1750092 1750133 -142532356 + C-rich Low_complexity Low_complexity 1 41 0 1008 209 0 71 chr12 1751771 1751846 -142530643 + MER58A DNA MER1_type 1 80 -2340 2214 125 0 0 chr12 1751846 1752150 -142530339 + AluSq SINE Alu 1 304 -9 1008 209 0 71 chr12 1752150 1752313 -142530176 + MER58A DNA MER1_type 80 222 -2 2272 87 19 16 chr12 1752494 1752806 -142529683 - AluSq SINE Alu 0 313 1 848 272 37 16 chr12 1752993 1753236 -142529253 - MIR SINE MIR -10 252 5 1882 164 52 12 chr12 1753294 1753623 -142528866 + MER2 DNA MER2_type 3 344 0 891 189 90 0 chr12 1753772 1753984 -142528505 - L1MC2 LINE L1 -3 6341 6111 865 191 42 0 chr12 1753985 1754153 -142528336 - AluJb SINE Alu -1 311 137 770 183 34 57 chr12 1754167 1754342 -142528147 + AluJo SINE Alu 126 296 -16 2134 113 0 29 chr12 1754345 1754655 -142527834 + AluSq SINE Alu 1 301 -12 201 171 0 0 chr12 1754807 1754842 -142527647 + T-rich Low_complexity Low_complexity 1 35 0 1727 194 0 6 chr12 1755356 1755670 -142526819 - AluJo SINE Alu 0 312 1 297 0 0 0 chr12 1757180 1757213 -142525276 + (TG)n Simple_repeat Simple_repeat 2 34 0 1583 170 57 11 chr12 1757214 1757496 -142524993 - AluJb SINE Alu -17 295 1 327 291 36 9 chr12 1757730 1757840 -142524649 - L1ME LINE L1 -513 5608 5496 205 277 191 32 chr12 1758087 1758181 -142524308 + L2 LINE L2 3146 3254 -18 2058 104 10 7 chr12 1758310 1758439 -142524050 + AluSp SINE Alu 2 129 -184 202 0 29 57 chr12 1758439 1758474 -142524015 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 2058 104 10 7 chr12 1758474 1758641 -142523848 + AluSp SINE Alu 129 299 -14 1615 180 31 3 chr12 1760101 1760395 -142522094 - AluJb SINE Alu -10 302 1 392 189 14 0 chr12 1760536 1760610 -142521879 + MER116 DNA Mariner 6 80 0 372 181 32 76 chr12 1760617 1760787 -142521702 - L1ME LINE L1 -301 5820 5658 2223 120 3 0 chr12 1760813 1761121 -142521368 + AluSx SINE Alu 1 309 -3 315 207 413 0 chr12 1761126 1761247 -142521242 - MER112 DNA MER1_type -23 237 67 345 288 89 57 chr12 1761271 1761587 -142520902 - L1ME LINE L1 -2155 5653 5328 307 266 213 12 chr12 1761627 1761796 -142520693 - L1ME LINE L1 -858 5288 5086 523 228 29 29 chr12 1761798 1761934 -142520555 + LTR49 LTR ERV1 459 594 -1 349 278 130 60 chr12 1762029 1762382 -142520107 + L1ME4a LINE L1 5679 6056 -65 1464 171 80 8 chr12 1762427 1762720 -142519769 + AluJb SINE Alu 1 312 0 1015 208 20 15 chr12 1762780 1762982 -142519507 - AluJo SINE Alu -105 207 5 208 241 0 0 chr12 1762989 1763047 -142519442 + T-rich Low_complexity Low_complexity 1 58 0 226 224 35 0 chr12 1763047 1763105 -142519384 - L1ME LINE L1 -1162 4984 4925 346 172 0 16 chr12 1764325 1764343 -142518146 - MER46A DNA MER2_type -75 161 145 1636 127 156 0 chr12 1764343 1764626 -142517863 + MER46B DNA MER2_type 1 202 -34 507 261 112 12 chr12 1764806 1764967 -142517522 + MIR SINE MIR 5 181 -81 291 335 89 0 chr12 1765129 1765287 -142517202 + MIR SINE MIR 65 236 -26 2562 244 113 48 chr12 1765573 1765818 -142516671 - L1ME1 LINE L1 -5 6161 5933 842 208 13 0 chr12 1765818 1765972 -142516517 + FRAM SINE Alu 1 156 -10 2562 244 113 48 chr12 1765972 1766435 -142516054 - L1ME1 LINE L1 -233 5933 5501 1462 177 39 45 chr12 1766435 1766746 -142515743 - AluJb SINE Alu -3 309 1 2562 244 113 48 chr12 1766746 1766942 -142515547 - L1ME1 LINE L1 -665 5501 5319 1048 185 106 97 chr12 1766942 1767283 -142515206 - MER2 DNA MER2_type 0 344 1 2562 244 113 48 chr12 1767283 1767697 -142514792 - L1ME1 LINE L1 -847 5319 4933 2306 98 3 0 chr12 1767697 1767992 -142514497 - AluSx SINE Alu -16 296 1 2562 244 113 48 chr12 1767992 1768398 -142514091 - L1ME1 LINE L1 -1233 4933 4319 31 26 0 0 chr12 1768699 1768737 -142513752 + AT_rich Low_complexity Low_complexity 1 38 0 1248 112 122 5 chr12 1769013 1769210 -142513279 + LTR12 LTR ERV1 66 285 -429 312 244 11 0 chr12 1769211 1769301 -142513188 + LTR30 LTR ERV1 553 643 -79 801 107 1 15 chr12 1769301 1769427 -142513062 + LTR12 LTR ERV1 301 584 -130 * 2162 120 3 6 chr12 1769422 1769746 -142512743 + HERV9 LTR ERV1 73 395 -8004 * 5703 102 1 1 chr12 1769726 1770507 -142511982 - HERV9 LTR ERV1 -116 8283 7503 829 129 188 8 chr12 1770505 1770761 -142511728 - HERV9 LTR ERV1 -5755 1141 840 * 26667 91 16 22 chr12 1770748 1774472 -142508017 - HERV9 LTR ERV1 -3447 4952 1252 281 114 0 23 chr12 1774489 1774533 -142507956 - HERV9 LTR ERV1 -2789 5610 5568 * 1000 145 6 12 chr12 1774513 1774670 -142507819 + pTR5 LTR ERV1 587 742 -1696 1715 103 96 4 chr12 1774670 1774931 -142507558 + LTR12 LTR ERV1 1 285 -429 295 264 11 0 chr12 1774931 1775022 -142507467 + LTR30 LTR ERV1 552 643 -79 731 118 2 2 chr12 1775022 1775139 -142507350 + LTR12 LTR ERV1 170 582 -132 2259 105 7 0 chr12 1776400 1776695 -142505794 + AluSp SINE Alu 3 299 -14 278 304 0 33 chr12 1776805 1776897 -142505592 + L2 LINE L2 3219 3307 -6 336 208 0 0 chr12 1777504 1777576 -142504913 - L1ME1 LINE L1 -5 6161 6090 681 296 69 9 chr12 1778376 1778609 -142503880 + MIR SINE MIR 10 256 -6 2005 134 10 13 chr12 1778637 1778950 -142503539 - AluSx SINE Alu 0 312 1 247 290 75 56 chr12 1778960 1779067 -142503422 - L2 LINE L2 -42 3230 3122 309 236 14 42 chr12 1779203 1779275 -142503214 - L2 LINE L2 -1 3312 3243 2964 104 76 17 chr12 1779276 1779747 -142502742 - MER1A DNA MER1_type -30 499 1 489 174 10 10 chr12 1779759 1779857 -142502632 + MER4A LTR ERV1 1 98 -566 1359 129 182 116 chr12 1779857 1780179 -142502310 + MER4A LTR ERV1 261 613 -51 2377 100 7 0 chr12 1780179 1780489 -142502000 - AluSx SINE Alu 0 312 1 1359 129 182 116 chr12 1780489 1780545 -142501944 + MER4A LTR ERV1 613 664 0 1706 252 137 24 chr12 1780546 1781447 -142501042 - L2 LINE L2 -74 3239 2230 335 214 84 104 chr12 1781476 1781630 -142500859 - L2 LINE L2 -1417 1897 1747 1738 123 27 61 chr12 1782321 1782647 -142499842 + AluSx SINE Alu 1 316 0 239 122 0 0 chr12 1782677 1782718 -142499771 + L1MC/D LINE L1 5879 5919 -440 2836 154 35 53 chr12 1782720 1782958 -142499531 + L1MB3 LINE L1 5561 5802 -381 2237 98 0 3 chr12 1782958 1783254 -142499235 - AluSg SINE Alu -15 295 1 2836 154 35 53 chr12 1783254 1783637 -142498852 + L1MB3 LINE L1 5802 6171 -12 1205 144 0 0 chr12 1783656 1783836 -142498653 - AluJb SINE Alu -4 308 129 187 289 0 0 chr12 1783873 1783918 -142498571 - L2 LINE L2 0 3272 3228 2183 104 20 7 chr12 1784095 1784393 -142498096 - AluSq SINE Alu -11 302 1 303 284 25 0 chr12 1784595 1784676 -142497813 - L2 LINE L2 -6 3307 3225 483 237 105 0 chr12 1784869 1784983 -142497506 - L2 LINE L2 0 3313 3188 2152 122 0 0 chr12 1785175 1785471 -142497018 - AluSq SINE Alu -17 296 1 223 321 0 18 chr12 1785535 1785591 -142496898 + MIR SINE MIR 34 88 -120 * 276 310 118 68 chr12 1785553 1785995 -142496494 + L2 LINE L2 2088 2551 -763 305 325 87 16 chr12 1786036 1786162 -142496327 + L2 LINE L2 2937 3071 -201 28 29 0 0 chr12 1786437 1786472 -142496017 + AT_rich Low_complexity Low_complexity 1 35 0 2174 102 14 3 chr12 1787089 1787383 -142495106 - AluSq SINE Alu -16 297 1 2360 96 0 3 chr12 1787415 1787728 -142494761 + AluSx SINE Alu 1 312 0 207 0 0 0 chr12 1787933 1787956 -142494533 + (T)n Simple_repeat Simple_repeat 1 23 0 22 70 0 0 chr12 1788300 1788343 -142494146 + AT_rich Low_complexity Low_complexity 1 43 0 29 28 0 0 chr12 1788418 1788454 -142494035 + AT_rich Low_complexity Low_complexity 1 36 0 855 173 0 0 chr12 1788454 1788587 -142493902 - FLAM_C SINE Alu 0 133 1 216 0 0 0 chr12 1788592 1788616 -142493873 + (T)n Simple_repeat Simple_repeat 1 24 0 2517 70 0 0 chr12 1789310 1789612 -142492877 + AluY SINE Alu 1 302 -9 1325 165 150 0 chr12 1790038 1790298 -142492191 - AluJo SINE Alu -13 299 1 1660 173 67 6 chr12 1790306 1790652 -142491837 - L1MB4 LINE L1 0 6180 5814 2134 120 0 13 chr12 1790652 1790961 -142491528 + AluSx SINE Alu 1 305 -7 3450 136 60 12 chr12 1790991 1791646 -142490843 - L1MC2 LINE L1 -15 6329 5644 20660 30 9 7 chr12 1792585 1795898 -142486591 - L1PA4 LINE L1 -3 6152 2838 309 288 116 14 chr12 1795976 1796122 -142486367 + MIR SINE MIR 37 197 -65 1586 121 128 12 chr12 1796568 1796825 -142485664 - AluSg SINE Alu -23 287 1 1753 174 3 33 chr12 1797065 1797364 -142485125 + AluJb SINE Alu 1 290 -22 1169 203 81 31 chr12 1798382 1798703 -142483786 + MER58B DNA MER1_type 4 340 -1 2309 94 0 7 chr12 1798793 1799091 -142483398 + AluSx SINE Alu 1 296 -16 1795 180 21 8 chr12 1799221 1799593 -142482896 - MLT1B LTR MaLR 0 390 14 359 309 158 23 chr12 1799697 1799962 -142482527 - L2 LINE L2 -25 3288 2988 785 323 35 25 chr12 1800032 1800431 -142482058 - L2 LINE L2 -445 2869 2467 1870 157 17 7 chr12 1801068 1801367 -142481122 - AluJo SINE Alu -10 302 1 1833 142 77 19 chr12 1801504 1801829 -142480660 + MER2 DNA MER2_type 1 344 0 567 143 0 4 chr12 1802084 1802308 -142480181 + AluSx SINE Alu 1 301 -8 1517 155 62 38 chr12 1802370 1802660 -142479829 + AluJo SINE Alu 3 299 -13 21 57 0 0 chr12 1802824 1802859 -142479630 + AT_rich Low_complexity Low_complexity 1 35 0 2324 102 7 0 chr12 1803073 1803378 -142479111 - AluY SINE Alu -4 307 1 1267 137 0 6 chr12 1803436 1803611 -142478878 - AluSx SINE Alu -138 174 1 2007 104 53 20 chr12 1803743 1804099 -142478390 - HSMAR2 DNA Mariner -1 1301 934 * 4680 152 6 4 chr12 1804096 1804919 -142477570 - HSMAR2 DNA Mariner -477 825 1 1489 215 64 83 chr12 1805068 1805212 -142477277 + L1M4 LINE L1 2246 2391 -3755 1802 130 123 0 chr12 1805212 1805488 -142477001 + AluSx SINE Alu 1 310 -2 1489 215 64 83 chr12 1805488 1805727 -142476762 + L1M4 LINE L1 2391 2633 -3513 1610 202 3 21 chr12 1805727 1806009 -142476480 + AluJo SINE Alu 6 282 -30 1489 215 64 83 chr12 1806009 1806037 -142476452 + L1M4 LINE L1 2633 2660 -3486 182 37 37 0 chr12 1806037 1806064 -142476425 + (CAAAA)n Simple_repeat Simple_repeat 2 29 0 1489 215 64 83 chr12 1806064 1806398 -142476091 + L1M4 LINE L1 2660 2979 -3167 1080 261 29 36 chr12 1806549 1807214 -142475275 - L1M4b LINE L1 -4652 2307 1550 2538 65 0 0 chr12 1807214 1807522 -142474967 - AluY SINE Alu -3 308 1 618 184 6 81 chr12 1807526 1807700 -142474789 - L1M4 LINE L1 -1127 5019 4859 2756 150 38 32 chr12 1807702 1808255 -142474234 - MER21A LTR ERV1 0 931 376 549 161 153 0 chr12 1808346 1808483 -142474006 - MER21A LTR ERV1 -773 158 1 706 196 164 32 chr12 1808496 1808807 -142473682 - L1M4 LINE L1 -1300 4846 4495 1282 193 23 19 chr12 1808807 1809066 -142473423 - AluJo SINE Alu -10 302 43 404 234 66 51 chr12 1809070 1809251 -142473238 - L1M4 LINE L1 -1642 4504 4316 1741 168 0 36 chr12 1809251 1809560 -142472929 + AluJo SINE Alu 1 298 -14 404 234 66 51 chr12 1809560 1809634 -142472855 - L1M4 LINE L1 -1830 4316 4245 246 294 49 12 chr12 1809783 1809946 -142472543 - L1M4 LINE L1 -1869 4277 4109 1656 162 7 48 chr12 1810482 1810791 -142471698 - AluJo SINE Alu -13 299 4 2061 93 31 71 chr12 1810881 1811203 -142471286 - AluSc SINE Alu 0 309 1 980 188 6 6 chr12 1811203 1811372 -142471117 - AluSg/x SINE Alu -4 306 135 231 266 210 42 chr12 1811605 1811748 -142470741 + MIR SINE MIR 86 252 -10 21 0 0 0 chr12 1811803 1811824 -142470665 + AT_rich Low_complexity Low_complexity 1 21 0 245 295 90 0 chr12 1812662 1812740 -142469749 + MIR SINE MIR 124 208 -54 244 269 42 57 chr12 1812978 1813171 -142469318 - L1ME4a LINE L1 -157 5964 5775 474 65 0 0 chr12 1813662 1813724 -142468765 + (CTA)n Simple_repeat Simple_repeat 1 62 0 1836 106 76 0 chr12 1813724 1813988 -142468501 - AluSx SINE Alu -28 284 1 2104 116 7 7 chr12 1814056 1814350 -142468139 - AluSc SINE Alu -15 294 1 366 268 121 17 chr12 1814716 1814947 -142467542 - MER112 DNA MER1_type 0 260 6 300 221 0 29 chr12 1814965 1815033 -142467456 - L2 LINE L2 -335 2978 2913 26 23 0 23 chr12 1815112 1815135 -142467354 + AT_rich Low_complexity Low_complexity 1 24 -19 2241 100 3 0 chr12 1815135 1815424 -142467065 - AluSx SINE Alu -22 290 1 26 23 0 23 chr12 1815424 1815444 -142467045 + AT_rich Low_complexity Low_complexity 24 43 0 1165 256 150 34 chr12 1815444 1815998 -142466491 - L2 LINE L2 -407 2907 2290 329 305 12 0 chr12 1817361 1817443 -142465046 - MIR3 SINE MIR -4 204 122 286 294 124 41 chr12 1817807 1817997 -142464492 - MIR SINE MIR -53 209 3 234 336 133 18 chr12 1818598 1818711 -142463778 + MER5A DNA MER1_type 60 185 -4 2044 121 0 4 chr12 1818719 1819000 -142463489 + AluSg SINE Alu 1 280 -30 235 0 57 0 chr12 1819004 1819039 -142463450 + (CAAAA)n Simple_repeat Simple_repeat 2 38 0 38 61 0 0 chr12 1819097 1819163 -142463326 + AT_rich Low_complexity Low_complexity 1 66 0 3561 175 29 7 chr12 1819296 1819674 -142462815 - L1MB8 LINE L1 -12 6166 5763 2157 184 65 50 chr12 1819674 1820216 -142462273 + MER44D DNA MER2_type 1 605 0 3561 175 29 7 chr12 1820216 1820557 -142461932 - L1MB8 LINE L1 -415 5763 5431 967 328 31 13 chr12 1820707 1821178 -142461311 + L2 LINE L2 2553 3038 -234 39 60 0 0 chr12 1821266 1821333 -142461156 + AT_rich Low_complexity Low_complexity 1 67 0 308 312 58 7 chr12 1821620 1821758 -142460731 - MIR SINE MIR 0 262 118 231 233 20 42 chr12 1822162 1822249 -142460240 + MER5A DNA MER1_type 87 189 0 439 214 53 46 chr12 1822338 1822469 -142460020 + MIR SINE MIR 123 254 -8 2058 143 0 3 chr12 1822670 1822964 -142459525 + AluJo SINE Alu 1 293 -19 452 290 8 30 chr12 1823032 1823163 -142459326 + MIR3 SINE MIR 45 172 -36 288 0 0 0 chr12 1823533 1823565 -142458924 + (CA)n Simple_repeat Simple_repeat 2 33 0 1482 251 81 21 chr12 1823569 1824048 -142458441 - L1ME3A LINE L1 -44 6126 5619 362 316 72 0 chr12 1824393 1824545 -142457944 + MIR SINE MIR 100 262 0 214 326 0 0 chr12 1825026 1825075 -142457414 - L2 LINE L2 -86 3186 3138 225 324 70 0 chr12 1825151 1825222 -142457267 - L2 LINE L2 -275 2997 2922 2495 75 7 3 chr12 1825962 1826269 -142456220 + AluSq SINE Alu 1 308 -5 576 282 68 37 chr12 1826581 1827071 -142455418 - MER110 LTR ERV1 0 468 1 1960 118 35 3 chr12 1828527 1828816 -142453673 - AluSq SINE Alu -15 298 1 1759 121 4 19 chr12 1828895 1829152 -142453337 - AluJb SINE Alu -15 297 45 26 30 0 0 chr12 1829427 1829460 -142453029 + AT_rich Low_complexity Low_complexity 1 33 0 527 108 151 58 chr12 1829869 1830008 -142452481 + MER106A DNA MER1_type 40 191 -45 1385 128 18 154 chr12 1830016 1830353 -142452136 + AluJo SINE Alu 1 291 -11 387 273 142 34 chr12 1830863 1831039 -142451450 - MIR3 SINE MIR 0 208 14 442 305 51 15 chr12 1831191 1831388 -142451101 + MIR SINE MIR 49 252 -10 2265 86 20 13 chr12 1833674 1833977 -142448512 - AluSc SINE Alu -4 305 1 1136 60 0 0 chr12 1833977 1834110 -142448379 - AluSc SINE Alu -176 133 1 247 306 121 34 chr12 1835798 1836020 -142446469 - MIR SINE MIR -12 250 11 2081 94 87 3 chr12 1836348 1836636 -142445853 - AluSp SINE Alu 0 313 2 4066 173 64 15 chr12 1837440 1838594 -142443895 + L1MB7 LINE L1 4886 6103 -81 22 0 0 0 chr12 1839718 1839740 -142442749 + AT_rich Low_complexity Low_complexity 1 22 0 22 0 0 0 chr12 1840444 1840466 -142442023 + AT_rich Low_complexity Low_complexity 1 22 0 381 262 81 12 chr12 1841539 1841711 -142440778 + MER112 DNA MER1_type 66 249 -11 820 140 104 30 chr12 1841908 1842111 -142440378 - AluSg/x SINE Alu 0 349 135 1622 118 4 0 chr12 1842374 1842602 -142439887 - AluSq SINE Alu -13 300 72 194 364 0 15 chr12 1843106 1843172 -142439317 + MIR3 SINE MIR 4 68 -140 840 257 25 33 chr12 1843202 1843447 -142439042 - MIR SINE MIR 0 262 20 347 310 0 0 chr12 1843456 1843543 -142438946 + MIR3 SINE MIR 95 181 -27 818 148 0 95 chr12 1847918 1848087 -142434402 + Tigger3(Golem) DNA MER2_type 2884 3036 0 537 60 0 0 chr12 1848102 1848169 -142434320 + Alu SINE Alu 5 71 -239 423 243 133 46 chr12 1848189 1848407 -142434082 - L1 LINE L1 -1713 4433 4197 327 233 0 36 chr12 1848459 1848558 -142433931 - MIR SINE MIR -61 147 99 2205 95 7 3 chr12 1848980 1849274 -142433215 + AluSg SINE Alu 1 295 -15 184 212 0 0 chr12 1849389 1849422 -142433067 - L3b LINE CR1 -68 1515 1483 215 289 124 29 chr12 1849712 1849865 -142432624 + MIR SINE MIR 33 203 -5 292 233 27 14 chr12 1850952 1851025 -142431464 - MIR SINE MIR -13 249 176 378 209 70 12 chr12 1851057 1851143 -142431346 + MIR SINE MIR 113 203 -59 244 224 79 26 chr12 1851187 1851263 -142431226 + MIR SINE MIR 102 181 -81 1317 229 98 14 chr12 1853324 1854008 -142428481 - MER21B LTR ERV1 -71 792 16 298 165 39 107 chr12 1854011 1854114 -142428375 - MER21B LTR ERV1 -767 96 1 362 230 46 0 chr12 1854995 1855082 -142427407 + MER94 DNA DNA 23 113 -21 396 277 96 12 chr12 1855334 1855500 -142426989 - MIR SINE MIR -60 202 23 188 108 0 27 chr12 1860623 1860660 -142421829 + (GA)n Simple_repeat Simple_repeat 1 36 0 405 0 0 0 chr12 1860990 1861035 -142421454 + (TG)n Simple_repeat Simple_repeat 2 46 0 214 277 266 71 chr12 1861699 1861966 -142420523 + L2 LINE L2 2944 3262 -10 387 0 0 0 chr12 1863096 1863139 -142419350 + (TG)n Simple_repeat Simple_repeat 2 44 0 521 257 130 16 chr12 1863536 1863789 -142418700 + MLT1J LTR MaLR 28 309 -202 593 224 55 12 chr12 1865652 1865817 -142416672 - MER5A DNA MER1_type -4 185 14 880 238 112 59 chr12 1865947 1866455 -142416034 + MLT1F LTR MaLR 2 536 -6 205 268 0 18 chr12 1866626 1866682 -142415807 - L2 LINE L2 -5 3267 3213 1099 236 28 8 chr12 1867235 1867489 -142415000 + MER58 DNA MER1_type 1 259 -2161 190 296 214 0 chr12 1868305 1868403 -142414086 - MIR3 SINE MIR -38 170 52 400 232 42 18 chr12 1869634 1869802 -142412687 + (TG)n Simple_repeat Simple_repeat 1 172 0 387 289 95 40 chr12 1871524 1871748 -142410741 - MIR SINE MIR 0 262 18 759 199 130 0 chr12 1872187 1872348 -142410141 - MER5A DNA MER1_type -3 186 5 963 214 5 0 chr12 1872365 1872561 -142409928 + MER3 DNA MER1_type 10 206 -3 197 211 0 0 chr12 1872577 1872615 -142409874 - MIR SINE MIR -63 145 108 196 237 0 0 chr12 1873167 1873205 -142409284 - MIR3 SINE MIR -4 204 167 255 176 0 20 chr12 1873414 1873465 -142409024 - LTR12 LTR ERV1 -614 100 51 225 180 0 40 chr12 1873465 1873515 -142408974 - LTR30 LTR ERV1 -674 48 1 843 272 201 21 chr12 1873518 1873859 -142408630 + L2 LINE L2 2354 2632 -681 2207 137 0 7 chr12 1873859 1874166 -142408323 - AluSx SINE Alu -7 305 1 843 272 201 21 chr12 1874166 1874615 -142407874 + L2 LINE L2 2632 3303 -10 257 327 91 0 chr12 1874779 1874889 -142407600 + L3b LINE CR1 1291 1410 -173 209 169 0 92 chr12 1875452 1875517 -142406972 + CT-rich Low_complexity Low_complexity 1 59 0 488 265 0 6 chr12 1875719 1875900 -142406589 + (CA)n Simple_repeat Simple_repeat 1 180 0 362 316 37 42 chr12 1876136 1876326 -142406163 - MIR3 SINE MIR 0 208 20 10894 35 45 5 chr12 1876436 1877760 -142404729 + SVA Other Other 9 1384 -2 1657 24 0 28 chr12 1877775 1877986 -142404503 + SVA Other Other 1182 1386 0 221 179 0 18 chr12 1879493 1879549 -142402940 + CT-rich Low_complexity Low_complexity 4 58 0 467 337 51 6 chr12 1882899 1883074 -142399415 + MIR SINE MIR 21 203 -59 507 228 144 0 chr12 1883206 1883360 -142399129 - MER5A DNA MER1_type -9 180 1 212 296 14 28 chr12 1884788 1884859 -142397630 + MIR SINE MIR 46 115 -147 294 340 28 9 chr12 1885243 1885349 -142397140 - MIR SINE MIR -66 196 89 191 300 114 0 chr12 1887705 1887775 -142394714 - MIR3 SINE MIR -11 197 120 796 301 22 6 chr12 1891144 1891383 -142391106 + MIR SINE MIR 15 248 -14 195 373 0 0 chr12 1891432 1891491 -142390998 + L2 LINE L2 3255 3313 0 313 292 152 64 chr12 1891684 1891855 -142390634 - MIR SINE MIR 0 262 77 282 345 0 0 chr12 1892968 1893052 -142389437 + MIR SINE MIR 128 211 -51 219 36 0 0 chr12 1894397 1894425 -142388064 + (CA)n Simple_repeat Simple_repeat 2 29 0 470 371 108 0 chr12 1898459 1898672 -142383817 + MIR SINE MIR 8 243 -19 379 313 44 52 chr12 1898805 1899054 -142383435 + MIR SINE MIR 2 248 -14 290 372 0 0 chr12 1899060 1899154 -142383335 - MER5A DNA MER1_type -84 105 12 181 259 35 17 chr12 1899463 1899521 -142382968 + MIR SINE MIR 82 140 -68 598 253 25 31 chr12 1901930 1902092 -142380397 + MIR SINE MIR 46 206 -56 191 395 37 9 chr12 1902543 1902652 -142379837 + MIR3 SINE MIR 65 176 -32 184 98 24 24 chr12 1904351 1904392 -142378097 + (GGGA)n Simple_repeat Simple_repeat 4 44 0 911 188 72 19 chr12 1904742 1904950 -142377539 - MER20 DNA MER1_type 0 219 1 238 286 133 10 chr12 1906547 1906645 -142375844 + MER5B DNA MER1_type 40 149 -29 1812 298 86 66 chr12 1906652 1907014 -142375475 - L1MC5 LINE L1 -61 7900 7547 995 145 0 6 chr12 1907014 1907173 -142375316 - L1MB8 LINE L1 -11 6167 6010 1812 298 86 66 chr12 1907173 1907737 -142374752 - L1MC5 LINE L1 -414 7547 6996 620 200 17 0 chr12 1907737 1907879 -142374610 - FLAM_C SINE Alu 0 145 2 1812 298 86 66 chr12 1907879 1909597 -142372892 - L1MC5 LINE L1 -965 6996 5313 1968 47 115 36 chr12 1909597 1909875 -142372614 + AluY SINE Alu 1 300 -11 1334 221 14 14 chr12 1909876 1910157 -142372332 - AluJb SINE Alu -31 281 1 1812 298 86 66 chr12 1910157 1910617 -142371872 - L1MC5 LINE L1 -2648 5313 4864 288 53 0 0 chr12 1910617 1910655 -142371834 + (TG)n Simple_repeat Simple_repeat 2 39 0 1812 298 86 66 chr12 1910655 1911303 -142371186 - L1MC5 LINE L1 -3097 4864 4026 827 137 0 8 chr12 1911362 1911486 -142371003 + FLAM_C SINE Alu 1 123 -20 377 248 30 20 chr12 1911488 1911589 -142370900 - L1MC5 LINE L1 -2191 3955 3854 832 293 9 9 chr12 1911751 1911976 -142370513 + MIR SINE MIR 6 230 -32 246 284 0 0 chr12 1912364 1912438 -142370051 - L1M4 LINE L1 -1560 4586 4513 280 386 0 15 chr12 1913138 1913270 -142369219 + MIR3 SINE MIR 76 205 -3 2081 142 0 0 chr12 1913377 1913680 -142368809 - AluSx SINE Alu -9 303 1 768 293 40 81 chr12 1913692 1913827 -142368662 + L2 LINE L2 2902 3041 -272 877 119 0 35 chr12 1913827 1913970 -142368519 - L1MB5 LINE L1 -8 6166 6029 768 293 40 81 chr12 1913970 1914264 -142368225 + L2 LINE L2 3041 3313 0 230 306 74 8 chr12 1914540 1914661 -142367828 - MIR3 SINE MIR -14 194 66 230 314 105 42 chr12 1915358 1915549 -142366940 + L2 LINE L2 2935 3137 -135 283 279 158 42 chr12 1916353 1916518 -142365971 - L2 LINE L2 -585 2729 2546 1464 238 93 12 chr12 1916741 1917170 -142365319 + MLT1C LTR MaLR 4 467 0 444 250 0 0 chr12 1918027 1918123 -142364366 - MER5B DNA MER1_type -5 173 78 1104 143 19 56 chr12 1918123 1918339 -142364150 + AluJo SINE Alu 83 290 -22 326 263 12 12 chr12 1918340 1918420 -142364069 - MER5B DNA MER1_type -95 83 4 494 252 29 58 chr12 1918543 1918749 -142363740 - MIR SINE MIR -41 221 22 398 299 0 0 chr12 1918889 1918976 -142363513 - MIR SINE MIR -162 100 14 504 192 151 7 chr12 1919413 1919559 -142362930 + MER3 DNA MER1_type 41 207 -2 241 133 67 0 chr12 1919527 1919572 -142362917 - MER3 DNA MER1_type -125 84 37 * 454 331 96 0 chr12 1919821 1919987 -142362502 + MIR SINE MIR 3 184 -78 2291 109 0 3 chr12 1920404 1920717 -142361772 - AluSx SINE Alu 0 312 1 2348 220 67 18 chr12 1920748 1921397 -142361092 - L1ME2 LINE L1 -36 6062 5447 1572 143 87 4 chr12 1921397 1921687 -142360802 - AluSx SINE Alu 0 312 1 2348 220 67 18 chr12 1921687 1922687 -142359802 - L1ME2 LINE L1 -651 5447 4291 1315 268 60 2 chr12 1924783 1925301 -142357188 - L1ME2 LINE L1 -1779 4301 3737 1541 293 60 36 chr12 1925303 1925591 -142356898 - L1ME2 LINE L1 -4452 1809 1529 1927 133 3 38 chr12 1925591 1925906 -142356583 - AluJo SINE Alu -8 304 1 1541 293 60 36 chr12 1925906 1926522 -142355967 - L1ME2 LINE L1 -4732 1529 884 4825 147 53 95 chr12 1926522 1927542 -142354947 + L1MA9 LINE L1 5108 6170 -142 189 0 0 0 chr12 1927542 1927563 -142354926 + (TATTG)n Simple_repeat Simple_repeat 4 24 0 4825 147 53 95 chr12 1927563 1927707 -142354782 + L1MA9 LINE L1 6170 6241 -71 1804 159 39 9 chr12 1927707 1928041 -142354448 - MER2 DNA MER2_type 0 344 1 4825 147 53 95 chr12 1928041 1928074 -142354415 + L1MA9 LINE L1 6241 6274 -38 1520 287 55 25 chr12 1928118 1928755 -142353734 + MLT2F LTR ERVL 1 656 -7 301 252 140 0 chr12 1928756 1928863 -142353626 - L1ME2 LINE L1 -5240 830 709 1015 276 54 27 chr12 1929249 1929654 -142352835 - L1ME2 LINE L1 -5617 453 38 461 272 27 15 chr12 1930007 1930347 -142352142 + (TG)n Simple_repeat Simple_repeat 1 344 0 227 253 14 14 chr12 1930426 1930572 -142351917 + (TG)n Simple_repeat Simple_repeat 2 147 0 258 324 11 39 chr12 1930589 1930771 -142351718 + (TG)n Simple_repeat Simple_repeat 1 177 0 511 240 99 9 chr12 1931932 1932123 -142350366 + MIR SINE MIR 23 224 -38 2008 306 136 16 chr12 1934445 1935341 -142347148 - L3 LINE CR1 -34 1543 540 189 319 56 14 chr12 1935399 1935471 -142347018 - L3 LINE CR1 -1150 427 353 192 329 13 13 chr12 1937064 1937143 -142345346 + L2 LINE L2 3142 3220 -93 235 236 106 24 chr12 1937673 1937796 -142344693 - MIR3 SINE MIR -72 136 4 306 298 40 40 chr12 1938559 1938710 -142343779 - MER5B DNA MER1_type -27 151 1 500 221 134 87 chr12 1940880 1941282 -142341207 + MLT1J LTR MaLR 78 498 -13 269 277 170 11 chr12 1942103 1942374 -142340115 + LTR16A LTR ERVL 130 443 -7 218 122 41 41 chr12 1942589 1942638 -142339851 + L2 LINE L2 2924 2972 -300 303 301 45 38 chr12 1942753 1942886 -142339603 + L2 LINE L2 3136 3269 -3 204 359 65 0 chr12 1942919 1943011 -142339478 + L3b LINE CR1 1258 1355 -228 374 260 103 63 chr12 1947289 1947639 -142334850 + L1ME LINE L1 600 963 -5156 699 310 42 40 chr12 1947711 1948279 -142334210 + L1ME LINE L1 1098 1666 -4463 21 0 0 0 chr12 1948450 1948471 -142334018 + AT_rich Low_complexity Low_complexity 1 21 0 625 176 17 34 chr12 1948471 1948590 -142333899 - FLAM_A SINE Alu -14 128 12 17781 163 25 23 chr12 1948820 1952235 -142330254 + L1MA4A LINE L1 7 3414 -3591 1797 117 0 11 chr12 1952235 1952499 -142329990 + AluSg1 SINE Alu 26 286 -23 17781 163 25 23 chr12 1952499 1954620 -142327869 + L1MA4A LINE L1 3414 5529 -1476 1435 191 7 24 chr12 1954620 1954913 -142327576 - AluJo SINE Alu -24 288 1 17781 163 25 23 chr12 1954913 1955363 -142327126 + L1MA4A LINE L1 5529 5977 -1028 207 0 0 0 chr12 1955363 1955386 -142327103 + (CAAAA)n Simple_repeat Simple_repeat 2 24 0 17781 163 25 23 chr12 1955386 1955581 -142326908 + L1MA4A LINE L1 5977 6170 -835 441 0 0 0 chr12 1955581 1955630 -142326859 + (CA)n Simple_repeat Simple_repeat 2 50 0 17781 163 25 23 chr12 1955630 1956020 -142326469 + L1MA4A LINE L1 6170 6608 -397 511 115 13 0 chr12 1956024 1956102 -142326387 + AluJ/FLAM SINE Alu 2 80 -232 2636 119 15 10 chr12 1956102 1956506 -142325983 + L1MA4A LINE L1 6599 7004 -1 477 289 71 16 chr12 1956508 1956761 -142325728 + L1ME LINE L1 2093 2359 -3770 670 279 32 42 chr12 1956766 1957174 -142325315 + L1ME LINE L1 2548 2951 -3178 * 1079 179 94 69 chr12 1957163 1957348 -142325141 + L1MB3 LINE L1 5101 5280 -903 207 0 0 0 chr12 1957348 1957371 -142325118 + (CAA)n Simple_repeat Simple_repeat 1 23 0 1079 179 94 69 chr12 1957371 1957618 -142324871 + L1MB3 LINE L1 5280 5532 -651 240 35 0 0 chr12 1957652 1957681 -142324808 + (TG)n Simple_repeat Simple_repeat 2 30 0 2114 144 22 27 chr12 1957691 1958094 -142324395 + L1MB3 LINE L1 5781 6181 -2 1326 286 78 14 chr12 1958119 1958951 -142323538 + L1ME LINE L1 2943 3827 -2302 906 272 22 31 chr12 1958960 1959112 -142323377 + L1ME LINE L1 5303 5455 -690 1743 155 14 30 chr12 1959112 1959409 -142323080 - AluJo SINE Alu -20 292 1 906 272 22 31 chr12 1959409 1959579 -142322910 + L1ME LINE L1 5455 5622 -523 15839 151 11 11 chr12 1959584 1963499 -142318990 + L1MA3 LINE L1 2393 6305 0 2735 101 24 13 chr12 1963499 1963953 -142318536 + L1MB5 LINE L1 1999 2457 -3927 * 6164 220 40 5 chr12 1963941 1965470 -142317019 + L1MB5 LINE L1 3975 5557 -825 201 309 18 0 chr12 1965613 1965668 -142316821 + L3 LINE CR1 1265 1320 -257 222 37 0 0 chr12 1966201 1966228 -142316261 + (TTCA)n Simple_repeat Simple_repeat 2 28 0 2334 32 0 11 chr12 1968149 1968466 -142314023 - AluY SINE Alu 0 316 3 204 317 173 0 chr12 1968682 1968786 -142313703 + L2 LINE L2 3151 3272 0 645 236 28 0 chr12 1968988 1969132 -142313357 + L1MC1 LINE L1 5583 5730 -444 1762 176 176 2 chr12 1969138 1969536 -142312953 + L1MC1 LINE L1 5865 6331 -2 2352 184 14 0 chr12 1969552 1969992 -142312497 + L1MB5 LINE L1 5957 6402 -8 2014 96 24 3 chr12 1969996 1970288 -142312201 - AluSc SINE Alu -10 299 2 230 295 259 14 chr12 1970367 1970506 -142311983 + MIR3 SINE MIR 34 206 -2 310 270 36 36 chr12 1972353 1972490 -142309999 - MIR3 SINE MIR -68 140 4 293 267 168 0 chr12 1972728 1972829 -142309660 + MIR SINE MIR 25 142 -120 344 272 61 0 chr12 1973650 1973764 -142308725 + MIR3 SINE MIR 71 191 -17 257 358 0 8 chr12 1973928 1974062 -142308427 + (CA)n Simple_repeat Simple_repeat 2 134 0 206 207 17 0 chr12 1974076 1974134 -142308355 + (CA)n Simple_repeat Simple_repeat 1 59 0 199 225 0 0 chr12 1974828 1974868 -142307621 - L2 LINE L2 -6 3307 3268 188 314 89 8 chr12 1974976 1975100 -142307389 - L2 LINE L2 -221 3051 2918 349 161 0 0 chr12 1975253 1975309 -142307180 + MER91B DNA MER1_type 2 57 -133 581 272 38 5 chr12 1976086 1976270 -142306219 + MIR SINE MIR 39 228 -34 3606 246 73 23 chr12 1978104 1979158 -142303331 + MER69 DNA AcHobo 10 1116 -1410 526 231 12 99 chr12 1979165 1979317 -142303172 + MER69 DNA AcHobo 2276 2401 -125 2289 199 7 32 chr12 1979317 1979854 -142302635 - L1MB3 LINE L1 -2 6181 5658 526 231 12 99 chr12 1979854 1979944 -142302545 + MER69 DNA AcHobo 2401 2497 -29 565 246 55 27 chr12 1980269 1980489 -142302000 + L2 LINE L2 2592 2817 -497 256 196 0 0 chr12 1980504 1980560 -142301929 - MER69 DNA AcHobo -128 2398 2343 256 196 0 0 chr12 1980598 1980654 -142301835 - MER69 DNA AcHobo -128 2398 2343 256 196 0 0 chr12 1980692 1980748 -142301741 - MER69 DNA AcHobo -128 2398 2343 256 196 0 0 chr12 1980786 1980842 -142301647 - MER69 DNA AcHobo -128 2398 2343 256 196 0 0 chr12 1980880 1980936 -142301553 - MER69 DNA AcHobo -128 2398 2343 256 196 0 0 chr12 1980974 1981030 -142301459 - MER69 DNA AcHobo -128 2398 2343 243 293 85 38 chr12 1981226 1981438 -142301051 - LTR33 LTR ERVL -7 514 293 429 254 0 42 chr12 1981686 1981828 -142300661 + L1MB7 LINE L1 6044 6179 -5 239 202 24 36 chr12 1981971 1982055 -142300434 + L2 LINE L2 3181 3263 -50 2155 161 68 68 chr12 1982317 1982821 -142299668 + L1MB3 LINE L1 5680 6183 0 2434 42 0 26 chr12 1983031 1983338 -142299151 - AluY SINE Alu -12 299 1 315 0 0 0 chr12 1983770 1983805 -142298684 + (TG)n Simple_repeat Simple_repeat 1 35 0 * 390 21 0 0 chr12 1983804 1983851 -142298638 + (GA)n Simple_repeat Simple_repeat 1 47 0 464 225 92 35 chr12 1984627 1984800 -142297689 + MIR3 SINE MIR 15 197 -11 281 313 179 0 chr12 1985061 1985173 -142297316 + MIR SINE MIR 23 154 -108 568 257 145 36 chr12 1985175 1985451 -142297038 - MLT1L LTR MaLR 0 615 310 268 226 0 0 chr12 1985466 1985519 -142296970 - MLT1J LTR MaLR -348 163 111 238 284 15 0 chr12 1985638 1985705 -142296784 + MIR SINE MIR 176 243 -19 277 331 99 33 chr12 1985949 1986100 -142296389 + MIR3 SINE MIR 34 194 -14 211 211 0 0 chr12 1986192 1986230 -142296259 + (CA)n Simple_repeat Simple_repeat 1 38 0 201 398 37 19 chr12 1987729 1987890 -142294599 - MIR3 SINE MIR -8 200 37 264 261 185 11 chr12 1988201 1988293 -142294196 + MIR SINE MIR 63 170 -92 956 145 6 11 chr12 1988710 1989076 -142293413 + GA-rich Low_complexity Low_complexity 1 364 0 203 329 86 26 chr12 1989341 1989493 -142292996 - L2 LINE L2 -11 3261 3101 585 280 56 13 chr12 1989680 1989912 -142292577 - MLT1L LTR MaLR -14 601 360 195 250 78 16 chr12 1989913 1989977 -142292512 + MER5A DNA MER1_type 65 132 -57 983 139 36 0 chr12 1990469 1990635 -142291854 + AluJo SINE Alu 121 292 -20 583 243 46 92 chr12 1990685 1990989 -142291500 + L1ME3 LINE L1 5863 6152 -10 351 253 12 6 chr12 1991863 1992029 -142290460 + (TG)n Simple_repeat Simple_repeat 2 168 0 251 213 19 19 chr12 1992052 1992160 -142290329 + (TG)n Simple_repeat Simple_repeat 2 109 0 252 131 0 98 chr12 1992160 1992221 -142290268 + MER4-int LTR ERV1 1111 1165 -5433 262 368 56 7 chr12 1992535 1992679 -142289810 + MIR3 SINE MIR 47 197 -11 311 280 136 0 chr12 1993328 1993446 -142289043 - MER94 DNA DNA 0 134 1 21 0 0 0 chr12 1993798 1993819 -142288670 + AT_rich Low_complexity Low_complexity 1 21 0 186 191 0 0 chr12 1994164 1994211 -142288278 + (CA)n Simple_repeat Simple_repeat 1 47 0 335 323 179 12 chr12 1994215 1994472 -142288017 + L2 LINE L2 2914 3213 -59 191 189 27 0 chr12 1998341 1998378 -142284111 + L2 LINE L2 3214 3251 -21 1052 80 0 0 chr12 1999429 1999567 -142282922 - L1P LINE L1 -4166 1980 1843 1443 76 0 0 chr12 1999591 1999776 -142282713 - AluY SINE Alu -126 185 1 5475 135 28 35 chr12 1999779 2000762 -142281727 - L1P LINE L1 -4288 1858 883 24882 80 7 32 chr12 2000763 2004999 -142277490 + L1PA8A LINE L1 1987 6113 -18 1736 154 17 10 chr12 2005663 2005962 -142276527 - AluJo SINE Alu -4 308 8 777 91 0 27 chr12 2006829 2006939 -142275550 - FLAM_C SINE Alu -35 108 2 525 221 181 38 chr12 2007261 2007484 -142275005 + MIR SINE MIR 20 261 -1 1561 181 17 17 chr12 2009628 2009921 -142272568 - AluJo SINE Alu -19 293 1 2106 100 0 10 chr12 2009964 2010264 -142272225 + AluSq SINE Alu 1 297 -16 407 267 67 22 chr12 2010649 2010784 -142271705 + L2 LINE L2 3173 3313 0 1181 173 4 9 chr12 2011136 2011362 -142271127 - AluJo SINE Alu -2 310 86 261 0 0 0 chr12 2012132 2012161 -142270328 + (CTG)n Simple_repeat Simple_repeat 1 29 0 1752 174 6 3 chr12 2012875 2013186 -142269303 + AluJo SINE Alu 1 312 0 1696 160 24 3 chr12 2013832 2014125 -142268364 - AluJo SINE Alu -7 305 7 436 304 16 47 chr12 2016321 2016512 -142265977 + L1ME4a LINE L1 5935 6119 -2 409 232 50 0 chr12 2016911 2017010 -142265479 + L1 LINE L1 5002 5105 -1041 289 231 31 0 chr12 2017064 2017129 -142265360 + L1 LINE L1 5027 5093 -1053 345 211 40 0 chr12 2017129 2017205 -142265284 + L1 LINE L1 5027 5105 -1041 266 224 35 0 chr12 2017206 2017264 -142265225 + L1 LINE L1 5039 5098 -1048 * 314 237 40 0 chr12 2017259 2017335 -142265154 + L1 LINE L1 5027 5105 -1041 265 234 47 0 chr12 2017336 2017400 -142265089 + L1 LINE L1 5039 5105 -1041 * 310 237 40 0 chr12 2017389 2017465 -142265024 + L1 LINE L1 5027 5105 -1041 283 250 40 0 chr12 2017454 2017530 -142264959 + L1 LINE L1 5027 5105 -1041 * 326 224 40 0 chr12 2017519 2017595 -142264894 + L1 LINE L1 5027 5105 -1041 270 263 40 0 chr12 2017584 2017660 -142264829 + L1 LINE L1 5027 5105 -1041 * 248 276 40 0 chr12 2017649 2017725 -142264764 + L1 LINE L1 5027 5105 -1041 * 270 263 40 0 chr12 2017714 2017790 -142264699 + L1 LINE L1 5027 5105 -1041 * 276 246 31 0 chr12 2017779 2017844 -142264645 + L1 LINE L1 5027 5093 -1053 306 237 40 0 chr12 2017844 2017920 -142264569 + L1 LINE L1 5027 5105 -1041 239 226 38 0 chr12 2017921 2017974 -142264515 + L1 LINE L1 5039 5093 -1053 310 237 40 0 chr12 2017974 2018050 -142264439 + L1 LINE L1 5027 5105 -1041 6139 157 16 17 chr12 2018104 2018652 -142263837 + L1MA8 LINE L1 5027 5574 -717 2322 74 0 3 chr12 2018652 2018951 -142263538 + AluY SINE Alu 1 298 -13 6139 157 16 17 chr12 2018951 2019659 -142262830 + L1MA8 LINE L1 5574 6289 -2 323 349 60 13 chr12 2019678 2019827 -142262662 - L3 LINE CR1 -1 1576 1421 200 410 19 32 chr12 2020660 2020816 -142261673 - L2 LINE L2 -192 3080 2927 385 199 108 19 chr12 2020895 2021042 -142261447 + MER88 LTR ERVL 79 206 -258 * 1725 240 75 10 chr12 2020938 2021421 -142261068 - MER74B LTR ERVL -74 548 35 290 342 51 8 chr12 2021755 2021872 -142260617 - L2 LINE L2 -1 3271 3150 401 245 46 94 chr12 2021919 2022232 -142260257 - L1MC5 LINE L1 -393 7415 7219 * 806 271 151 41 chr12 2022201 2022891 -142259598 - L1MC4 LINE L1 -742 7219 6557 324 247 132 50 chr12 2023250 2023432 -142259057 - L1M4 LINE L1 -812 5334 5138 381 296 36 32 chr12 2023433 2023653 -142258836 - L1 LINE L1 -1032 5114 4894 295 295 6 12 chr12 2024065 2024231 -142258258 - L1 LINE L1 -1602 4544 4380 24 77 0 0 chr12 2024374 2024426 -142258063 + AT_rich Low_complexity Low_complexity 1 52 0 902 216 31 53 chr12 2024862 2025089 -142257400 + MER58A DNA MER1_type 2 223 -1 1848 112 56 11 chr12 2027057 2027343 -142255146 + AluSq SINE Alu 1 299 -14 23 0 0 0 chr12 2027716 2027739 -142254750 + AT_rich Low_complexity Low_complexity 1 23 0 180 0 0 0 chr12 2028520 2028540 -142253949 + (T)n Simple_repeat Simple_repeat 1 20 0 314 322 17 0 chr12 2031474 2031589 -142250900 - MIR3 SINE MIR -5 203 87 351 326 0 0 chr12 2031756 2031854 -142250635 + GA-rich Low_complexity Low_complexity 3 100 0 304 314 198 16 chr12 2033004 2033125 -142249364 + L2 LINE L2 3129 3271 -1 274 204 23 11 chr12 2035810 2035898 -142246591 + GA-rich Low_complexity Low_complexity 4 92 0 2672 215 34 33 chr12 2037505 2038006 -142244483 - L1ME2 LINE L1 -9 6549 6050 2033 96 0 14 chr12 2038006 2038286 -142244203 - AluSx SINE Alu -34 278 3 2126 110 10 0 chr12 2038287 2038586 -142243903 - AluSx SINE Alu -10 302 1 2672 215 34 33 chr12 2038586 2038818 -142243671 - L1ME2 LINE L1 -507 6051 5813 1616 224 53 13 chr12 2038826 2039282 -142243207 + L1ME2 LINE L1 5761 6234 -322 840 202 40 16 chr12 2039308 2039560 -142242929 - L1ME2 LINE L1 -745 5795 5538 22 70 0 0 chr12 2039938 2039981 -142242508 + AT_rich Low_complexity Low_complexity 1 43 0 256 361 82 25 chr12 2040544 2040666 -142241823 + L2 LINE L2 3123 3251 -21 201 323 87 52 chr12 2040737 2040966 -142241523 - L2 LINE L2 -213 3059 2823 5132 230 70 36 chr12 2041137 2041182 -142241307 - L1ME2 LINE L1 -2364 4176 4134 2676 153 32 0 chr12 2041182 2041654 -142240835 - L1MB3 LINE L1 -2 6181 5695 5132 230 70 36 chr12 2041654 2044749 -142237740 - L1ME2 LINE L1 -2406 4134 954 2437 66 3 10 chr12 2044783 2045087 -142237402 - AluY SINE Alu -9 302 1 243 287 56 19 chr12 2045200 2045308 -142237181 - L1ME2 LINE L1 -5632 898 787 244 289 48 32 chr12 2045696 2045882 -142236607 - L1ME2 LINE L1 -5883 647 59 657 263 129 51 chr12 2046400 2047066 -142235423 - HAL1 LINE L1 0 2507 1790 1314 259 35 20 chr12 2047081 2047428 -142235061 - MLT1I LTR MaLR 0 409 58 355 209 143 9 chr12 2047577 2047682 -142234807 - HAL1 LINE L1 -2388 119 1 774 174 0 0 chr12 2048077 2048198 -142234291 + FLAM_A SINE Alu 1 121 -12 514 163 0 22 chr12 2048224 2048316 -142234173 + FRAM SINE Alu 61 150 -26 218 238 50 28 chr12 2048325 2048407 -142234082 + GA-rich Low_complexity Low_complexity 5 72 0 2038 135 7 13 chr12 2048407 2048711 -142233778 + AluSx SINE Alu 1 302 -10 324 351 107 19 chr12 2049051 2049256 -142233233 + MIR SINE MIR 28 250 -12 278 266 55 37 chr12 2050195 2050304 -142232185 + MIR SINE MIR 108 218 -44 1008 180 112 52 chr12 2050346 2050651 -142231838 - MER33 DNA MER1_type 0 324 2 21 36 0 0 chr12 2050800 2050828 -142231661 + AT_rich Low_complexity Low_complexity 1 28 0 270 0 0 0 chr12 2052602 2052632 -142229857 + (TG)n Simple_repeat Simple_repeat 2 31 0 21 57 0 0 chr12 2052725 2052760 -142229729 + AT_rich Low_complexity Low_complexity 1 35 0 180 302 60 9 chr12 2054751 2054867 -142227622 + L2 LINE L2 2148 2269 -1045 248 297 126 50 chr12 2055337 2055494 -142226995 + L2 LINE L2 2866 3040 -232 1264 128 33 83 chr12 2055494 2055736 -142226753 + MER30 DNA MER1_type 1 230 0 248 297 126 50 chr12 2055736 2055760 -142226729 + L2 LINE L2 3040 3061 -211 2133 88 27 27 chr12 2056221 2056515 -142225974 + AluSg SINE Alu 1 294 -16 1197 151 11 0 chr12 2058021 2058207 -142224282 + MER5A DNA MER1_type 1 188 -1 1763 125 14 61 chr12 2058404 2058722 -142223767 + AluJo SINE Alu 1 304 0 2349 84 0 0 chr12 2059729 2060028 -142222461 + AluSq SINE Alu 1 299 -14 249 225 42 42 chr12 2060603 2060674 -142221815 - MER5B DNA MER1_type -21 157 87 616 158 31 8 chr12 2060781 2060908 -142221581 - MER20 DNA MER1_type -89 130 1 4294 184 34 58 chr12 2063860 2064993 -142217496 + Charlie1a DNA MER1_type 1 1106 -349 491 110 7 208 chr12 2065014 2065102 -142217387 + Charlie1a DNA MER1_type 1333 1379 -1382 2382 83 0 0 chr12 2065102 2065402 -142217087 + AluSg SINE Alu 1 300 -10 491 110 7 208 chr12 2065402 2065467 -142217022 + Charlie1a DNA MER1_type 1379 1455 0 379 225 0 0 chr12 2065844 2065924 -142216565 + MER112 DNA MER1_type 172 251 -9 193 273 18 0 chr12 2066726 2066781 -142215708 + L2 LINE L2 2919 2974 -298 1262 153 0 5 chr12 2067076 2067309 -142215180 - AluJo SINE Alu 0 316 85 236 167 0 0 chr12 2067317 2067365 -142215124 - Alu SINE Alu -170 132 85 277 261 14 43 chr12 2067444 2067513 -142214976 + L2 LINE L2 3194 3260 -12 201 308 0 0 chr12 2068971 2069049 -142213440 + (TTA)n Simple_repeat Simple_repeat 2 79 0 196 246 18 70 chr12 2069123 2069180 -142213309 - L3 LINE CR1 -130 1447 1394 2369 93 0 7 chr12 2069841 2070151 -142212338 + AluSq SINE Alu 1 308 -5 212 213 363 0 chr12 2070473 2070553 -142211936 + MIR3 SINE MIR 93 201 -7 1146 176 40 0 chr12 2071283 2071482 -142211007 + MER58A DNA MER1_type 4 210 -14 224 323 46 92 chr12 2071524 2071654 -142210835 - L2 LINE L2 -22 3250 3127 690 293 59 36 chr12 2072048 2072301 -142210188 + MIR SINE MIR 1 259 -3 636 329 12 0 chr12 2073398 2073562 -142208927 - L2 LINE L2 0 3272 3107 200 200 67 0 chr12 2074471 2074516 -142207973 - MIR3 SINE MIR -54 154 107 415 240 143 19 chr12 2074565 2074719 -142207770 + MER5B DNA MER1_type 6 178 0 511 290 124 11 chr12 2074743 2074929 -142207560 + MIR SINE MIR 43 249 -13 280 229 49 0 chr12 2074954 2075015 -142207474 - MIR3 SINE MIR -132 76 13 349 244 0 191 chr12 2075169 2075337 -142207152 - L2 LINE L2 -1 3271 3136 2361 90 3 3 chr12 2075399 2075700 -142206789 - AluSq SINE Alu -8 305 5 580 217 101 0 chr12 2075774 2075912 -142206577 - MER5B DNA MER1_type -26 152 1 215 298 156 14 chr12 2076010 2076151 -142206338 - L2 LINE L2 -530 2784 2624 355 189 27 0 chr12 2076951 2077025 -142205464 - MER58 DNA MER1_type -106 109 34 1626 231 2 33 chr12 2077040 2077464 -142205025 + MER63 DNA MER1_type 649 1059 -2 1919 161 13 7 chr12 2078154 2078464 -142204025 + AluJo SINE Alu 1 312 0 620 153 42 7 chr12 2078464 2078608 -142203881 + GA-rich Low_complexity Low_complexity 4 152 0 212 242 15 0 chr12 2078981 2079047 -142203442 + CT-rich Low_complexity Low_complexity 1 67 0 773 287 24 24 chr12 2079142 2079393 -142203096 - MIR SINE MIR 0 262 12 545 302 174 12 chr12 2079719 2079961 -142202528 - L3 LINE CR1 -8 1569 1289 439 219 57 49 chr12 2080173 2080296 -142202193 - MIR SINE MIR -108 154 31 1010 207 137 43 chr12 2080307 2080372 -142202117 - MLT1A1 LTR MaLR -5 360 303 2353 89 0 3 chr12 2080372 2080665 -142201824 + AluSq SINE Alu 2 293 -20 1010 207 137 43 chr12 2080665 2080928 -142201561 - MLT1A1 LTR MaLR -62 303 1 3187 155 11 71 chr12 2080932 2081438 -142201051 + MER6A DNA MER2_type 1 461 -404 1805 142 68 4 chr12 2081438 2081719 -142200770 - AluJo SINE Alu -13 299 1 3187 155 11 71 chr12 2081719 2081856 -142200633 + MER6A DNA MER2_type 461 605 0 810 222 66 0 chr12 2081921 2082088 -142200401 + MER45A DNA AcHobo 1 178 0 211 111 0 28 chr12 2082896 2082932 -142199557 + MIR SINE MIR 21 55 -153 540 217 217 11 chr12 2083323 2083636 -142198853 - MLT1J LTR MaLR -23 488 82 472 264 78 9 chr12 2087349 2087498 -142194991 - MIR3 SINE MIR -48 160 1 502 235 136 128 chr12 2087605 2087856 -142194633 + MIR SINE MIR 10 262 0 196 186 0 102 chr12 2088049 2088108 -142194381 - MIR SINE MIR -63 145 93 1775 185 46 0 chr12 2088245 2088596 -142193893 - L1MB5 LINE L1 0 6174 5808 269 273 30 0 chr12 2090619 2090685 -142191804 + MER5B DNA MER1_type 17 84 -94 396 82 0 0 chr12 2090942 2091003 -142191486 + (TG)n Simple_repeat Simple_repeat 2 62 0 262 0 53 0 chr12 2092608 2092646 -142189843 + (CAA)n Simple_repeat Simple_repeat 2 41 0 307 351 153 4 chr12 2092751 2093019 -142189470 + L3 LINE CR1 954 1261 -316 693 234 85 51 chr12 2093025 2093260 -142189229 - MIR SINE MIR 0 262 20 430 364 30 4 chr12 2093274 2093505 -142188984 + L3 LINE CR1 1268 1504 -73 243 275 150 33 chr12 2093689 2093809 -142188680 - L2 LINE L2 0 3313 3180 22 94 0 0 chr12 2094084 2094148 -142188341 + GC_rich Low_complexity Low_complexity 1 64 0 654 337 53 16 chr12 2094657 2094900 -142187589 - L3b LINE CR1 -7 1576 1325 2111 113 24 0 chr12 2095447 2095738 -142186751 - AluSg SINE Alu -12 298 1 685 214 151 0 chr12 2096718 2096877 -142185612 + MER5A DNA MER1_type 7 189 0 491 335 77 24 chr12 2098444 2098731 -142183758 - L2 LINE L2 0 3272 2971 325 319 126 28 chr12 2099558 2099740 -142182749 + L3b LINE CR1 1249 1448 -135 285 370 0 10 chr12 2099834 2099934 -142182555 - MIR SINE MIR -116 146 48 2539 71 0 0 chr12 2100242 2100550 -142181939 - AluY SINE Alu -3 308 1 2143 216 18 11 chr12 2100870 2101440 -142181049 - Charlie2 DNA MER1_type -18 2844 2271 488 272 37 49 chr12 2101534 2101780 -142180709 - Charlie2 DNA MER1_type -2461 321 79 544 335 50 30 chr12 2102243 2102604 -142179885 - MLT1I LTR MaLR -2 407 40 2948 13 0 0 chr12 2102614 2102929 -142179560 - AluYb8 SINE Alu -3 315 1 255 325 18 74 chr12 2104345 2104508 -142177981 + MIR3 SINE MIR 17 170 -38 1184 251 147 16 chr12 2104731 2105174 -142177315 + MLT1D LTR MaLR 5 505 0 236 333 70 18 chr12 2105345 2105459 -142177030 - MIR SINE MIR -48 214 95 319 302 88 25 chr12 2106060 2106219 -142176270 + MIR SINE MIR 12 180 -82 192 279 0 0 chr12 2106225 2106268 -142176221 + L2 LINE L2 3270 3312 -1 612 296 104 5 chr12 2106273 2106493 -142175996 - MIR SINE MIR -1 261 20 248 87 22 43 chr12 2106564 2106610 -142175879 - L2 LINE L2 -8 3305 3261 650 274 46 13 chr12 2106667 2107229 -142175260 - MLT2F LTR ERVL 0 663 1 189 0 0 0 chr12 2107827 2107848 -142174641 + (GAA)n Simple_repeat Simple_repeat 1 21 0 282 304 101 9 chr12 2107925 2108142 -142174347 - L1ME4a LINE L1 -117 6004 5768 830 238 39 15 chr12 2108146 2108352 -142174137 + MIR SINE MIR 14 224 -38 321 268 39 1 chr12 2108360 2108447 -142174042 - L1ME4a LINE L1 -347 5774 5684 195 302 79 0 chr12 2108508 2108571 -142173918 - L2 LINE L2 -2 3270 3203 872 240 39 31 chr12 2109197 2109451 -142173038 + MIR SINE MIR 7 262 0 2509 227 125 43 chr12 2109876 2110940 -142171549 - L2 LINE L2 0 3313 2146 217 230 48 36 chr12 2111466 2111631 -142170858 + (CGCGG)n Simple_repeat Simple_repeat 2 168 0 27 29 0 0 chr12 2111658 2111692 -142170797 + GC_rich Low_complexity Low_complexity 1 34 0 22 56 0 0 chr12 2111725 2111761 -142170728 + GC_rich Low_complexity Low_complexity 1 36 0 22 80 0 0 chr12 2111776 2111826 -142170663 + GC_rich Low_complexity Low_complexity 1 50 0 224 0 40 80 chr12 2111868 2111918 -142170571 + (CGGG)n Simple_repeat Simple_repeat 1 48 0 31 44 0 0 chr12 2112002 2112047 -142170442 + GC_rich Low_complexity Low_complexity 1 45 0 29 47 0 0 chr12 2112146 2112189 -142170300 + GC_rich Low_complexity Low_complexity 1 43 0 23 114 0 0 chr12 2112648 2112762 -142169727 + GC_rich Low_complexity Low_complexity 1 114 0 32 114 0 0 chr12 2112932 2113090 -142169399 + GC_rich Low_complexity Low_complexity 1 158 0 504 59 0 0 chr12 2115145 2115213 -142167276 + (TG)n Simple_repeat Simple_repeat 2 69 0 194 227 67 53 chr12 2115463 2115538 -142166951 + L3 LINE CR1 115 190 -1387 225 247 173 0 chr12 2118667 2118748 -142163741 - MIR3 SINE MIR -6 202 108 257 274 0 74 chr12 2120111 2120206 -142162283 + MIR SINE MIR 124 211 -51 689 288 56 13 chr12 2121188 2121421 -142161068 - MIR SINE MIR 0 262 20 597 176 5 0 chr12 2121896 2122098 -142160391 - L1MB7 LINE L1 -1 6183 5945 2250 102 3 0 chr12 2122128 2122423 -142160066 - AluSc SINE Alu -13 296 1 1395 162 30 0 chr12 2122645 2122921 -142159568 - L1MB5 LINE L1 -298 5876 5589 205 343 53 91 chr12 2124410 2125107 -142157382 - L2 LINE L2 -2 3270 2599 345 125 0 0 chr12 2126424 2126480 -142156009 + (TG)n Simple_repeat Simple_repeat 2 57 0 1654 181 52 0 chr12 2128792 2129079 -142153410 - AluJo SINE Alu -10 302 1 470 289 93 29 chr12 2129358 2129823 -142152666 - L1MEd LINE L1 -746 1744 1226 707 181 14 12 chr12 2129825 2130097 -142152392 + CT-rich Low_complexity Low_complexity 1 272 0 378 120 0 0 chr12 2130115 2130190 -142152299 + (CCTG)n Simple_repeat Simple_repeat 2 76 0 1516 183 18 35 chr12 2130215 2130500 -142151989 - AluJb SINE Alu -32 280 1 500 256 67 41 chr12 2130505 2130774 -142151715 - L1MEd LINE L1 -4940 1179 904 215 222 14 42 chr12 2130936 2131008 -142151481 + MIR SINE MIR 147 216 -46 206 116 23 0 chr12 2131144 2131187 -142151302 + (TA)n Simple_repeat Simple_repeat 1 44 0 1971 143 0 3 chr12 2131187 2131474 -142151015 - AluSx SINE Alu -26 286 1 180 339 0 0 chr12 2131802 2131864 -142150625 - L2 LINE L2 -3 3310 3249 210 336 96 39 chr12 2131891 2131995 -142150494 - L2 LINE L2 -9 3263 3154 533 209 32 25 chr12 2132824 2132982 -142149507 + MER117 DNA MER1_type 5 163 -34 261 364 98 17 chr12 2133283 2133456 -142149033 - MIR SINE MIR 0 262 76 550 294 0 7 chr12 2134397 2134540 -142147949 - MIR SINE MIR -118 144 3 256 131 16 16 chr12 2135442 2135503 -142146986 + CT-rich Low_complexity Low_complexity 4 64 0 328 308 9 9 chr12 2136436 2136543 -142145946 - MIR SINE MIR 0 262 156 283 310 26 9 chr12 2136631 2136747 -142145742 + L1MEd LINE L1 265 382 -5737 1944 160 31 46 chr12 2136903 2136974 -142145515 + L1MB1 LINE L1 5716 5787 -381 1849 187 19 21 chr12 2136974 2137349 -142145140 + MLT1A2 LTR MaLR 1 374 0 1944 160 31 46 chr12 2137349 2137676 -142144813 + L1MB1 LINE L1 5787 6118 -50 5122 27 0 3 chr12 2137676 2138269 -142144220 + L1PA4 LINE L1 5565 6155 0 1944 160 31 46 chr12 2138269 2138283 -142144206 + L1MB1 LINE L1 6118 6131 -37 1864 171 30 22 chr12 2138283 2138645 -142143844 - MLT1A1 LTR MaLR 0 365 1 1944 160 31 46 chr12 2138645 2138684 -142143805 + L1MB1 LINE L1 6131 6168 0 619 278 70 67 chr12 2138810 2138953 -142143536 + L1MEd LINE L1 678 819 -1671 2239 135 0 3 chr12 2138953 2139265 -142143224 + AluSx SINE Alu 1 311 -1 619 278 70 67 chr12 2139265 2139294 -142143195 + L1MEd LINE L1 819 846 -1644 2508 93 0 0 chr12 2139294 2139605 -142142884 + AluY SINE Alu 1 311 0 619 278 70 67 chr12 2139605 2140263 -142142226 + L1MEd LINE L1 846 1615 -875 2515 57 0 3 chr12 2140263 2140559 -142141930 + AluY SINE Alu 1 295 -16 619 278 70 67 chr12 2140559 2140639 -142141850 + L1MEd LINE L1 1615 1693 -797 350 255 142 21 chr12 2140883 2141024 -142141465 - MIR SINE MIR 0 262 105 265 290 21 21 chr12 2141120 2141213 -142141276 - MIR SINE MIR -156 106 14 182 218 182 0 chr12 2142515 2142570 -142139919 + MIR SINE MIR 84 148 -114 321 232 146 0 chr12 2142828 2142910 -142139579 - L2 LINE L2 -2 3311 3218 22 35 0 0 chr12 2142967 2142996 -142139493 + AT_rich Low_complexity Low_complexity 1 29 0 2672 291 52 23 chr12 2143158 2144139 -142138350 - L3 LINE CR1 -44 1533 525 665 343 141 36 chr12 2144229 2145225 -142137264 + L2 LINE L2 2159 3272 0 1200 238 63 58 chr12 2145486 2145914 -142136575 - MLT1J2 LTR MaLR 0 450 21 247 290 174 61 chr12 2146448 2146776 -142135713 + L3b LINE CR1 1211 1575 -8 258 323 56 71 chr12 2146902 2147100 -142135389 + MIR SINE MIR 24 218 -44 812 263 123 4 chr12 2147362 2147590 -142134899 + MIR SINE MIR 8 262 0 370 250 70 62 chr12 2148337 2148465 -142134024 - L2 LINE L2 -8 3264 3136 4084 140 62 35 chr12 2148591 2148727 -142133762 - L1MB2 LINE L1 -2 6169 6038 2263 97 17 0 chr12 2148727 2149027 -142133462 + AluY SINE Alu 1 305 -6 4084 140 62 35 chr12 2149027 2149285 -142133204 - L1MB2 LINE L1 -133 6038 5788 2525 91 0 0 chr12 2149285 2149592 -142132897 - AluSx SINE Alu -5 307 1 4084 140 62 35 chr12 2149592 2150025 -142132464 - L1MB2 LINE L1 -383 5788 5319 1853 182 173 18 chr12 2150285 2150719 -142131770 - MLT1D LTR MaLR 0 505 5 312 337 46 11 chr12 2150809 2150984 -142131505 + MIR3 SINE MIR 10 190 -18 466 269 17 8 chr12 2151701 2151820 -142130669 - MIR SINE MIR -90 172 53 182 288 206 0 chr12 2152317 2152390 -142130099 - L2 LINE L2 -21 3251 3164 185 148 148 19 chr12 2153050 2153104 -142129385 - MIR SINE MIR -94 168 108 595 235 25 24 chr12 2153507 2153680 -142128809 - MIR3 SINE MIR 0 208 34 297 271 127 25 chr12 2153994 2154112 -142128377 - MIR SINE MIR -132 130 1 305 294 64 9 chr12 2154935 2155044 -142127445 - L2 LINE L2 -3 3269 3155 4004 148 35 20 chr12 2155544 2156109 -142126380 - L1MB4 LINE L1 -1 6179 5599 2573 58 0 13 chr12 2156109 2156420 -142126069 - AluY SINE Alu -4 307 1 4004 148 35 20 chr12 2156420 2156608 -142125881 - L1MB4 LINE L1 -581 5599 5415 507 357 33 0 chr12 2156918 2157100 -142125389 - MIR3 SINE MIR 0 208 21 298 321 30 15 chr12 2157808 2157939 -142124550 - MIR SINE MIR -51 211 79 866 283 14 5 chr12 2158824 2159043 -142123446 - MIR SINE MIR -40 222 2 486 311 52 35 chr12 2159087 2159138 -142123351 - L1ME4a LINE L1 -134 5987 5938 2279 96 0 63 chr12 2159138 2159470 -142123019 + AluSx SINE Alu 1 311 -1 486 311 52 35 chr12 2159470 2159481 -142123008 - L1ME4a LINE L1 -183 5938 5929 1562 136 26 49 chr12 2159481 2159745 -142122744 + AluJb SINE Alu 40 297 -15 1357 126 215 19 chr12 2159745 2160006 -142122483 + AluJb SINE Alu 1 312 0 486 311 52 35 chr12 2160006 2160288 -142122201 - L1ME4a LINE L1 -191 5930 5635 335 310 71 7 chr12 2160964 2161119 -142121370 - L2 LINE L2 0 3313 3149 194 281 225 0 chr12 2161232 2161321 -142121168 - L2 LINE L2 -5 3308 3200 10005 75 13 1 chr12 2161564 2163664 -142118825 - L1PA7 LINE L1 -2 6152 4034 737 248 14 37 chr12 2166892 2167106 -142115383 - MER3 DNA MER1_type 0 209 1 670 281 98 62 chr12 2168319 2168764 -142113725 - L2 LINE L2 -232 3040 2575 467 226 9 19 chr12 2169691 2169797 -142112692 - MER3 DNA MER1_type -104 105 1 263 299 0 13 chr12 2171690 2171767 -142110722 - MER117 DNA MER1_type 0 197 122 258 204 0 0 chr12 2171942 2171991 -142110498 - MLT1K LTR MaLR -15 573 525 717 229 76 88 chr12 2172991 2173524 -142108965 - MLT1G LTR MaLR -2 588 1 186 119 143 24 chr12 2173579 2173621 -142108868 - MIR3 SINE MIR -25 183 137 526 252 22 7 chr12 2174629 2174764 -142107725 + MER5A DNA MER1_type 19 155 -34 303 302 126 6 chr12 2175045 2175204 -142107285 - MER5B DNA MER1_type 0 178 1 2228 84 20 17 chr12 2175346 2175644 -142106845 - AluY SINE Alu -12 299 1 283 272 136 8 chr12 2175646 2175771 -142106718 - MIR3 SINE MIR -30 178 38 2060 127 0 7 chr12 2175961 2176266 -142106223 + AluSx SINE Alu 1 303 0 349 293 104 12 chr12 2176430 2176594 -142105895 - MIR SINE MIR -6 202 22 551 227 123 19 chr12 2177437 2177591 -142104898 + MIR SINE MIR 2 171 -91 236 313 10 31 chr12 2177725 2177821 -142104668 + MIR SINE MIR 20 113 -149 188 254 18 36 chr12 2177937 2177992 -142104497 + L3 LINE CR1 1517 1570 -7 627 240 137 11 chr12 2178034 2178209 -142104280 + MIR3 SINE MIR 9 205 -3 369 0 0 0 chr12 2179631 2179672 -142102817 + (TG)n Simple_repeat Simple_repeat 2 42 0 510 252 8 0 chr12 2181185 2181316 -142101173 + L1MB7 LINE L1 6041 6172 -12 199 332 37 32 chr12 2181577 2181767 -142100722 + L2 LINE L2 2074 2264 -1050 220 225 117 92 chr12 2181871 2181991 -142100498 - MER5A DNA MER1_type -66 123 1 288 260 89 107 chr12 2182002 2182069 -142100420 + MIR SINE MIR 21 88 -174 2392 73 0 0 chr12 2182069 2182372 -142100117 + AluY SINE Alu 1 303 -8 288 260 89 107 chr12 2182372 2182473 -142100016 + MIR SINE MIR 88 186 -76 740 186 44 50 chr12 2182773 2182939 -142099550 + MIR SINE MIR 98 262 0 369 0 0 0 chr12 2183084 2183125 -142099364 + (TG)n Simple_repeat Simple_repeat 1 41 0 180 337 46 62 chr12 2183746 2184250 -142098239 - L2 LINE L2 -893 2421 1926 485 283 96 0 chr12 2184551 2184717 -142097772 - MER5A DNA MER1_type -2 187 6 303 280 43 0 chr12 2185716 2185809 -142096680 + MIR SINE MIR 134 230 -32 205 290 14 14 chr12 2186657 2186726 -142095763 - MER5B DNA MER1_type -67 111 43 250 158 0 0 chr12 2186772 2186810 -142095679 + MIR SINE MIR 79 116 -146 421 270 10 0 chr12 2186956 2187056 -142095433 + L2 LINE L2 3208 3308 -5 329 288 128 40 chr12 2187089 2187214 -142095275 - MIR3 SINE MIR -58 150 15 2349 63 0 3 chr12 2187385 2187685 -142094804 - AluY SINE Alu -12 299 1 422 330 73 18 chr12 2187757 2187975 -142094514 - MIR SINE MIR -28 234 5 272 229 73 31 chr12 2189065 2189161 -142093328 - MIR SINE MIR 0 262 163 195 42 0 0 chr12 2189164 2189188 -142093301 + (T)n Simple_repeat Simple_repeat 1 24 0 43918 30 23 1 chr12 2189278 2195296 -142087193 - L1PA2 LINE L1 -1 6154 2 654 235 29 0 chr12 2195315 2195451 -142087038 - MIR SINE MIR -117 145 6 185 167 100 100 chr12 2195805 2195865 -142086624 + MER5B DNA MER1_type 63 122 -56 471 299 61 18 chr12 2196164 2196357 -142086132 + MIR SINE MIR 11 211 -51 702 203 101 0 chr12 2196402 2196540 -142085949 + AluJo SINE Alu 125 276 -36 1355 76 5 5 chr12 2197651 2197835 -142084654 + MSTB1 LTR MaLR 249 432 0 1696 206 28 30 chr12 2197990 2198388 -142084101 - MLT1C LTR MaLR 0 467 71 294 246 0 0 chr12 2199331 2199388 -142083101 + L2 LINE L2 3255 3311 -2 413 290 0 22 chr12 2199434 2199572 -142082917 + MIR3 SINE MIR 1 135 -73 443 285 112 75 chr12 2199681 2200173 -142082316 - L2 LINE L2 0 3313 2804 6437 137 37 44 chr12 2201179 2201950 -142080539 + Tigger3b DNA MER2_type 1 763 -2265 2151 86 27 0 chr12 2201950 2202242 -142080247 - AluSx SINE Alu -12 300 1 6437 137 37 44 chr12 2202242 2202708 -142079781 + Tigger3b DNA MER2_type 763 1230 -1 395 232 196 9 chr12 2203406 2203518 -142078971 - L2 LINE L2 -1 3312 3180 272 274 0 0 chr12 2204542 2204604 -142077885 - L2 LINE L2 0 3272 3211 396 278 61 28 chr12 2204862 2205042 -142077447 + MIR SINE MIR 77 262 0 190 246 53 18 chr12 2205275 2205332 -142077157 - L2 LINE L2 -243 3070 3012 1406 161 19 8 chr12 2207526 2207786 -142074703 - AluJo SINE Alu -16 296 34 368 229 0 62 chr12 2210142 2210238 -142072251 - MIR3 SINE MIR -11 197 108 999 246 103 14 chr12 2211175 2211456 -142071033 + MLT1J LTR MaLR 1 306 -205 23 33 0 0 chr12 2211653 2211683 -142070806 + AT_rich Low_complexity Low_complexity 1 30 0 1730 102 57 3 chr12 2212279 2212562 -142069927 - L1MB3 LINE L1 0 6183 5886 204 339 0 0 chr12 2214256 2214321 -142068168 - MIR3 SINE MIR -34 174 110 * 212 308 19 75 chr12 2214320 2214427 -142068062 + MIR3 SINE MIR 81 181 -27 299 324 84 20 chr12 2214967 2215266 -142067223 + L1ME3A LINE L1 5817 6134 -36 332 226 32 0 chr12 2215348 2215441 -142067048 + HAL1 LINE L1 45 140 -2367 2719 261 115 34 chr12 2215887 2216085 -142066404 + HAL1 LINE L1 154 335 -2172 891 141 49 5 chr12 2216085 2216269 -142066220 + L1MA8 LINE L1 6098 6289 -2 2719 261 115 34 chr12 2216269 2217271 -142065218 + HAL1 LINE L1 335 1451 -1056 1288 148 14 5 chr12 2217271 2217487 -142065002 + AluJb SINE Alu 1 218 -94 1141 217 84 49 chr12 2217501 2217847 -142064642 + HAL1 LINE L1 1427 1784 -723 658 248 159 25 chr12 2217871 2218185 -142064304 + HAL1 LINE L1 2129 2484 -23 1740 129 11 11 chr12 2218186 2218466 -142064023 + AluJb SINE Alu 1 280 -32 207 0 0 0 chr12 2218466 2218489 -142064000 + (TAAA)n Simple_repeat Simple_repeat 3 25 0 2216 99 6 6 chr12 2218565 2218878 -142063611 - AluSq SINE Alu 0 313 1 207 245 0 19 chr12 2218921 2218974 -142063515 - L2 LINE L2 0 3313 3262 238 188 146 0 chr12 2219261 2219309 -142063180 + L2 LINE L2 3213 3267 -5 2156 111 0 0 chr12 2219788 2220094 -142062395 - AluSg SINE Alu -4 306 1 217 132 0 26 chr12 2221017 2221055 -142061434 + MIR SINE MIR 117 153 -109 1640 95 4 22 chr12 2221964 2222196 -142060293 + AluSp SINE Alu 74 301 -12 447 326 18 2 chr12 2222251 2222434 -142060055 - MIR SINE MIR -63 145 5 473 217 217 31 chr12 2223293 2223454 -142059035 + MIR3 SINE MIR 3 193 -15 551 301 119 4 chr12 2223631 2223857 -142058632 + MIR SINE MIR 3 254 -8 186 268 66 54 chr12 2224426 2224559 -142057930 + MIR SINE MIR 13 148 -60 204 40 0 0 chr12 2224702 2224727 -142057762 + (TG)n Simple_repeat Simple_repeat 2 26 0 521 232 18 61 chr12 2225559 2225723 -142056766 + MIR SINE MIR 105 261 -1 181 324 301 4 chr12 2226033 2226292 -142056197 - L2 LINE L2 -1 3271 2936 1952 265 84 23 chr12 2226293 2226991 -142055498 - L1ME LINE L1 -5327 743 3 240 360 98 12 chr12 2227104 2227268 -142055221 - L2 LINE L2 -480 2834 2657 319 222 14 14 chr12 2227301 2227373 -142055116 + MIR3 SINE MIR 121 192 -16 307 302 16 62 chr12 2228964 2229093 -142053396 + L2 LINE L2 3132 3254 -18 211 314 29 0 chr12 2230474 2230544 -142051945 + MIR SINE MIR 63 134 -128 497 333 144 17 chr12 2230576 2230924 -142051565 - L2 LINE L2 -1 3312 2921 320 253 50 30 chr12 2231021 2231120 -142051369 + MLT1J1 LTR MaLR 346 446 0 402 217 12 0 chr12 2232708 2232791 -142049698 + MIR SINE MIR 92 175 -87 291 284 57 0 chr12 2232838 2232926 -142049563 + MIR SINE MIR 79 171 -91 1618 242 48 95 chr12 2233391 2233594 -142048895 - L1MC5 LINE L1 -27 7934 7723 2550 145 9 53 chr12 2233594 2234048 -142048441 - Tigger2a DNA MER2_type 0 434 1 1618 242 48 95 chr12 2234048 2234834 -142047655 - L1MC5 LINE L1 -238 7723 6991 777 258 146 59 chr12 2234852 2235466 -142047023 - L2 LINE L2 0 3313 2645 620 143 18 42 chr12 2236435 2236603 -142045886 + CT-rich Low_complexity Low_complexity 2 165 0 2043 130 30 0 chr12 2236611 2236911 -142045578 - AluSx SINE Alu -3 309 1 1966 156 0 0 chr12 2237754 2238059 -142044430 + AluSx SINE Alu 1 305 0 254 258 30 0 chr12 2238410 2238476 -142044013 - L3 LINE CR1 -2 1575 1508 318 320 37 29 chr12 2239623 2239865 -142042624 + MIR3 SINE MIR 1 246 -16 232 349 132 13 chr12 2239898 2240050 -142042439 - L3 LINE CR1 -584 993 824 181 286 5 0 chr12 2240161 2240229 -142042260 + MIR SINE MIR 74 143 -65 527 312 168 71 chr12 2240334 2241080 -142041409 + L3 LINE CR1 709 1526 -51 216 0 0 0 chr12 2241106 2241130 -142041359 + (A)n Simple_repeat Simple_repeat 1 24 0 233 173 30 29 chr12 2241922 2241989 -142040500 + MIR SINE MIR 103 167 -41 922 141 0 7 chr12 2242012 2242147 -142040342 - AluJo SINE Alu -178 134 1 194 271 0 0 chr12 2242174 2242222 -142040267 + MIR SINE MIR 183 230 -32 282 290 70 37 chr12 2242359 2242498 -142039991 - MER5B DNA MER1_type -30 159 6 415 270 51 15 chr12 2243599 2243736 -142038753 - L2 LINE L2 0 3313 3172 1833 161 37 45 chr12 2244367 2244747 -142037742 + MLT1B LTR MaLR 4 380 -10 612 279 132 5 chr12 2245663 2245882 -142036607 - MIR SINE MIR -13 249 3 341 309 71 42 chr12 2246095 2246263 -142036226 - MIR SINE MIR -44 218 46 2602 62 0 3 chr12 2247785 2248093 -142034396 + AluY SINE Alu 1 307 -4 284 348 127 17 chr12 2249483 2249664 -142032825 - L2 LINE L2 0 3272 3072 538 292 125 24 chr12 2249683 2250060 -142032429 - MLT1J2 LTR MaLR -23 427 13 363 278 0 0 chr12 2250488 2250664 -142031825 + (CA)n Simple_repeat Simple_repeat 2 177 0 411 272 0 0 chr12 2250695 2250875 -142031614 + (CA)n Simple_repeat Simple_repeat 1 180 0 498 256 0 0 chr12 2250889 2251069 -142031420 + (CA)n Simple_repeat Simple_repeat 1 180 0 270 340 38 0 chr12 2251581 2251687 -142030802 + MIR SINE MIR 120 229 -33 2038 154 0 0 chr12 2252147 2252452 -142030037 + AluJb SINE Alu 1 305 -7 333 282 194 31 chr12 2252646 2252940 -142029549 - L3 LINE CR1 -58 1519 1178 700 172 7 17 chr12 2253079 2253370 -142029119 + CT-rich Low_complexity Low_complexity 1 288 0 182 263 0 0 chr12 2253404 2253442 -142029047 - L3 LINE CR1 -613 964 927 337 262 149 42 chr12 2254304 2254472 -142028017 + MIR3 SINE MIR 23 208 0 277 279 38 77 chr12 2254788 2254971 -142027518 - MIR3 SINE MIR -7 201 26 359 272 29 110 chr12 2258065 2258213 -142024276 + L2 LINE L2 2826 2944 -369 2560 153 23 16 chr12 2258213 2258644 -142023845 + Tigger2a DNA MER2_type 1 434 0 359 272 29 110 chr12 2258644 2258767 -142023722 + L2 LINE L2 2944 3075 -238 467 234 18 0 chr12 2258770 2258881 -142023608 + AluJb SINE Alu 196 308 -4 472 192 242 28 chr12 2258926 2259108 -142023381 + L2 LINE L2 3093 3313 0 676 278 90 45 chr12 2259258 2259312 -142023177 - L2 LINE L2 -6 3307 3257 1230 126 36 50 chr12 2259312 2259534 -142022955 + MER20 DNA MER1_type 1 219 0 676 278 90 45 chr12 2259534 2259835 -142022654 - L2 LINE L2 -56 3257 2936 235 227 247 0 chr12 2260613 2260710 -142021779 - MLT1L LTR MaLR 0 615 495 264 287 282 5 chr12 2260739 2260941 -142021548 - MLT1L LTR MaLR -340 275 18 285 325 49 8 chr12 2261136 2261259 -142021230 - MIR3 SINE MIR -5 203 76 2508 13 0 0 chr12 2263024 2263327 -142019162 - L1PA2 LINE L1 -599 5556 5254 5238 22 10 0 chr12 2263329 2263925 -142018564 + L1PA2 LINE L1 5554 6155 0 287 297 124 22 chr12 2264371 2264556 -142017933 + L2 LINE L2 3008 3211 -102 1658 176 47 9 chr12 2264677 2265018 -142017471 - MLT1A1 LTR MaLR -2 363 10 536 328 33 6 chr12 2265380 2265560 -142016929 + MIR SINE MIR 20 204 -58 1952 146 0 35 chr12 2266502 2266818 -142015671 + AluJo SINE Alu 1 305 -7 198 349 121 0 chr12 2267100 2267166 -142015323 - L2 LINE L2 -10 3262 3189 225 196 22 0 chr12 2268960 2269006 -142013483 + GA-rich Low_complexity Low_complexity 2 48 0 2455 78 0 7 chr12 2270689 2270995 -142011494 - AluSq SINE Alu -9 304 1 349 376 8 0 chr12 2271696 2271813 -142010676 - L2 LINE L2 -19 3253 3136 181 244 12 85 chr12 2273123 2273205 -142009284 + MIR3 SINE MIR 95 170 -38 493 309 90 5 chr12 2273239 2273427 -142009062 + MIR SINE MIR 59 262 0 410 278 56 16 chr12 2273413 2273539 -142008950 - MIR SINE MIR -47 215 85 * 659 199 33 50 chr12 2275574 2275755 -142006734 + MER5B DNA MER1_type 1 178 0 2990 145 4 16 chr12 2275915 2276425 -142006064 + L1MB3 LINE L1 5679 6182 -1 250 240 125 42 chr12 2276723 2276819 -142005670 + MIR SINE MIR 31 134 -128 242 282 115 58 chr12 2276988 2277162 -142005327 + MIR3 SINE MIR 18 201 -7 306 276 114 16 chr12 2279227 2279350 -142003139 + MIR SINE MIR 109 243 -19 702 282 181 25 chr12 2279726 2280400 -142002089 - L2 LINE L2 0 3313 2539 876 283 62 58 chr12 2280517 2281118 -142001371 + L1ME4a LINE L1 5492 6094 -27 396 236 30 125 chr12 2281264 2281472 -142001017 + MIR3 SINE MIR 5 191 -71 211 306 27 72 chr12 2282556 2282667 -141999822 - MIR SINE MIR -149 113 8 200 219 0 0 chr12 2282821 2282862 -141999627 + L2 LINE L2 3271 3311 -2 221 266 0 47 chr12 2283273 2283337 -141999152 + L2 LINE L2 2212 2272 -1042 272 323 68 38 chr12 2283976 2284109 -141998380 + MIR3 SINE MIR 5 141 -67 435 38 0 0 chr12 2285095 2285148 -141997341 + (CA)n Simple_repeat Simple_repeat 2 54 0 450 173 37 105 chr12 2285250 2285425 -141997064 - MIR SINE MIR -62 146 35 359 291 212 20 chr12 2286314 2286517 -141995972 + MIR SINE MIR 15 256 -6 455 257 53 23 chr12 2286697 2286868 -141995621 + MER104 DNA MER2_type 5 180 0 503 258 230 10 chr12 2287213 2287422 -141995067 - MIR SINE MIR -6 256 2 221 294 110 32 chr12 2288058 2288228 -141994261 + MIR3 SINE MIR 6 187 -61 965 286 139 11 chr12 2288379 2288958 -141993531 - L2 LINE L2 -2 3311 2658 565 308 88 9 chr12 2289730 2289957 -141992532 - MIR SINE MIR 0 262 18 252 349 54 24 chr12 2290104 2290270 -141992219 + L2 LINE L2 3127 3297 -16 203 263 58 88 chr12 2290408 2290545 -141991944 - MIR SINE MIR -46 216 84 4270 199 33 60 chr12 2290905 2292078 -141990411 - L1MC4a LINE L1 -1 7807 6666 311 342 88 0 chr12 2292301 2292415 -141990074 - L2 LINE L2 0 3313 3190 617 261 113 15 chr12 2294848 2295043 -141987446 - MIR SINE MIR -21 241 28 471 315 146 0 chr12 2295142 2295307 -141987182 - MER5A DNA MER1_type 0 189 1 529 293 72 22 chr12 2297886 2298067 -141984422 + MIR SINE MIR 73 262 0 379 290 98 36 chr12 2300156 2300349 -141982140 - MIR SINE MIR -7 255 51 334 234 56 37 chr12 2300751 2300858 -141981631 + L2 LINE L2 3205 3313 0 364 284 147 10 chr12 2301339 2301536 -141980953 - Charlie8 DNA MER1_type -2128 289 66 208 189 27 0 chr12 2301720 2301757 -141980732 + MIR SINE MIR 117 154 -108 493 274 11 45 chr12 2301789 2301968 -141980521 - MIR SINE MIR -29 233 61 384 222 267 7 chr12 2302531 2302666 -141979823 + MIR SINE MIR 6 175 -87 199 162 0 0 chr12 2304440 2304477 -141978012 - MIR SINE MIR -118 144 108 926 218 88 70 chr12 2304592 2304923 -141977566 + MER46C DNA MER2_type 1 337 -1 511 335 138 0 chr12 2305457 2305681 -141976808 - MIR SINE MIR 0 262 8 662 291 69 5 chr12 2307769 2307972 -141974517 + MIR SINE MIR 47 262 0 825 293 16 8 chr12 2308049 2308238 -141974251 + MIR SINE MIR 8 201 -61 1059 221 8 55 chr12 2308238 2308473 -141974016 + MER58A DNA MER1_type 1 224 0 825 293 16 8 chr12 2308473 2308536 -141973953 + MIR SINE MIR 201 262 0 182 310 60 80 chr12 2308569 2308669 -141973820 - MIR SINE MIR -77 185 88 907 99 0 0 chr12 2308740 2308861 -141973628 - AluY SINE Alu -7 304 184 1921 54 0 0 chr12 2308861 2309082 -141973407 - AluY SINE Alu -90 221 1 379 292 108 0 chr12 2309687 2309807 -141972682 - L3b LINE CR1 -159 1424 1292 209 229 42 0 chr12 2310835 2310883 -141971606 + MIR SINE MIR 98 147 -61 218 239 292 9 chr12 2312574 2312687 -141969802 + MIR SINE MIR 112 256 -6 203 309 117 11 chr12 2312703 2312797 -141969692 - L3b LINE CR1 -157 1426 1323 199 269 154 13 chr12 2313719 2313797 -141968692 - MER5A DNA MER1_type -98 91 3 309 237 105 18 chr12 2314043 2314157 -141968332 + MIR SINE MIR 25 148 -114 248 318 65 0 chr12 2314684 2314791 -141967698 - L2 LINE L2 -6 3307 3194 399 346 15 8 chr12 2315113 2315246 -141967243 + MER5A DNA MER1_type 51 184 -5 209 264 194 39 chr12 2315710 2315839 -141966650 - MER5B DNA MER1_type -26 152 4 693 267 96 23 chr12 2315998 2316301 -141966188 - MLT1J1 LTR MaLR -113 333 9 2278 111 49 9 chr12 2316310 2316634 -141965855 - MER1B DNA MER1_type 0 337 1 271 167 117 0 chr12 2316847 2316907 -141965582 + MER116 DNA Mariner 1 67 -13 228 350 50 21 chr12 2317498 2317638 -141964851 - MIR SINE MIR -111 151 8 695 174 84 62 chr12 2318110 2318288 -141964201 + MER5A DNA MER1_type 1 182 -7 1139 169 0 11 chr12 2318711 2318895 -141963594 + AluJo SINE Alu 86 267 -45 1689 181 23 19 chr12 2319169 2319479 -141963010 + AluJo SINE Alu 1 311 -1 620 287 72 51 chr12 2319602 2319777 -141962712 + MIR SINE MIR 7 190 -72 1777 217 112 8 chr12 2319777 2319923 -141962566 - Charlie1b DNA MER1_type -2238 523 393 2496 83 0 6 chr12 2319923 2320236 -141962253 + AluY SINE Alu 1 311 0 1777 217 112 8 chr12 2320236 2320563 -141961926 - Charlie1b DNA MER1_type -2368 393 1 620 287 72 51 chr12 2320563 2320624 -141961865 + MIR SINE MIR 190 248 -14 744 296 72 41 chr12 2321817 2322236 -141960253 - L2 LINE L2 -4 3309 2878 * 1457 251 89 69 chr12 2322204 2322870 -141959619 - L2 LINE L2 -345 2969 2291 518 277 0 0 chr12 2323353 2323465 -141959024 - MIR3 SINE MIR -6 202 91 207 298 43 21 chr12 2324755 2324849 -141957640 + MIR3 SINE MIR 109 204 -4 240 287 82 25 chr12 2325595 2325717 -141956772 + MIR SINE MIR 91 219 -43 283 321 30 15 chr12 2325766 2325897 -141956592 + MIR SINE MIR 20 152 -110 323 310 9 35 chr12 2326050 2326163 -141956326 + L2 LINE L2 3150 3259 -13 340 253 14 42 chr12 2326251 2326381 -141956108 - MIR SINE MIR -21 187 63 225 178 74 28 chr12 2326527 2326602 -141955887 - MIR3 SINE MIR -54 154 77 795 288 77 29 chr12 2328635 2329114 -141953375 - LTR33 LTR ERVL -4 517 16 640 259 43 82 chr12 2330433 2330592 -141951897 + MIR SINE MIR 40 189 -73 1993 127 21 0 chr12 2330592 2330876 -141951613 + AluJo SINE Alu 1 290 -22 640 259 43 82 chr12 2330876 2330948 -141951541 + MIR SINE MIR 189 262 0 1179 167 5 28 chr12 2332038 2332253 -141950236 + MER2 DNA MER2_type 1 210 -135 24 53 0 0 chr12 2332280 2332318 -141950171 + AT_rich Low_complexity Low_complexity 1 38 0 471 278 35 58 chr12 2333563 2333736 -141948753 - MIR SINE MIR -74 188 20 243 150 0 0 chr12 2334964 2335004 -141947485 - MER2 DNA MER2_type -225 120 81 32 43 0 0 chr12 2335017 2335063 -141947426 + AT_rich Low_complexity Low_complexity 1 46 0 239 307 53 26 chr12 2335121 2335235 -141947254 - MIR SINE MIR -64 144 28 207 277 128 64 chr12 2336052 2336193 -141946296 - MIR SINE MIR -2 260 111 615 75 0 0 chr12 2336309 2336403 -141946086 + (CA)n Simple_repeat Simple_repeat 2 95 0 3235 215 54 23 chr12 2337234 2338172 -141944317 - L1ME1 LINE L1 -6 6229 5265 1087 192 19 27 chr12 2338177 2338437 -141944052 - L1ME1 LINE L1 -1276 4939 4682 651 254 10 24 chr12 2338436 2338641 -141943848 - L1ME1 LINE L1 -3651 2564 2363 * 25 31 0 0 chr12 2338691 2338723 -141943766 + AT_rich Low_complexity Low_complexity 1 32 0 1151 145 9 54 chr12 2338728 2338949 -141943540 - MER2 DNA MER2_type -134 211 1 514 243 87 0 chr12 2338950 2339112 -141943377 - L1ME1 LINE L1 -3850 2365 2213 207 267 28 57 chr12 2339337 2339513 -141942976 + (CTTTG)n Simple_repeat Simple_repeat 2 172 0 3035 254 60 19 chr12 2339744 2339942 -141942547 - L1ME1 LINE L1 -4150 2246 2058 1337 42 6 0 chr12 2339942 2340108 -141942381 - L1PA4 LINE L1 -6 6149 5983 3035 254 60 19 chr12 2340108 2341008 -141941481 - L1ME1 LINE L1 -4338 2058 1103 617 253 60 76 chr12 2341795 2342044 -141940445 - MLT1L LTR MaLR -125 490 246 337 301 184 7 chr12 2342045 2342181 -141940308 - MER5A DNA MER1_type -1 188 29 231 270 56 0 chr12 2342200 2342289 -141940200 - MLT1J LTR MaLR -317 194 101 294 256 0 39 chr12 2342526 2342604 -141939885 + L2 LINE L2 3193 3267 -5 335 227 21 62 chr12 2342661 2342758 -141939731 - MER5A DNA MER1_type -85 104 12 591 236 7 21 chr12 2344232 2344376 -141938113 - MER63 DNA MER1_type -294 768 1 186 176 194 46 chr12 2345593 2345701 -141936788 - L2 LINE L2 -38 3234 3111 283 288 0 0 chr12 2346568 2346641 -141935848 - MER5B DNA MER1_type -1 177 105 965 185 46 0 chr12 2346661 2346834 -141935655 - MER5A DNA MER1_type -6 183 3 382 311 0 0 chr12 2346847 2346937 -141935552 + MER5B DNA MER1_type 88 177 -1 221 288 51 0 chr12 2346967 2347026 -141935463 - L2 LINE L2 -6 3307 3246 473 239 51 36 chr12 2348518 2348656 -141933833 - L2 LINE L2 0 3313 3174 526 328 81 6 chr12 2348857 2349031 -141933458 - MIR3 SINE MIR -4 204 18 502 306 117 5 chr12 2349944 2350166 -141932323 + MIR SINE MIR 16 262 0 241 395 47 8 chr12 2351062 2351191 -141931298 - L2 LINE L2 -6 3266 3133 400 285 32 16 chr12 2351442 2351565 -141930924 + MIR SINE MIR 4 128 -134 337 270 0 11 chr12 2352167 2352256 -141930233 + L3b LINE CR1 1302 1389 -194 1528 121 36 5 chr12 2352433 2352656 -141929833 - MER30 DNA MER1_type 0 230 1 253 219 134 37 chr12 2352752 2352834 -141929655 + L2 LINE L2 3222 3311 -2 250 309 104 83 chr12 2352949 2353383 -141929106 - L2 LINE L2 0 3272 2830 239 316 164 29 chr12 2354304 2354548 -141927941 + L2 LINE L2 2994 3270 -2 354 326 92 32 chr12 2354617 2354855 -141927634 - MIR SINE MIR 0 262 2 194 282 118 0 chr12 2355486 2355571 -141926918 + L2 LINE L2 2476 2570 -744 278 287 110 7 chr12 2357008 2357144 -141925345 + MIR SINE MIR 1 150 -112 2275 108 0 0 chr12 2357284 2357571 -141924918 - AluSc SINE Alu -22 287 1 184 382 11 0 chr12 2357704 2357793 -141924696 + MIR SINE MIR 45 134 -74 329 255 38 125 chr12 2358132 2358316 -141924173 - MER5B DNA MER1_type -10 168 1 318 269 38 108 chr12 2358498 2358684 -141923805 - MER5A DNA MER1_type 0 189 17 621 270 113 0 chr12 2358775 2358934 -141923555 + MIR SINE MIR 69 245 -17 1872 147 3 33 chr12 2359308 2359614 -141922875 + AluJb SINE Alu 1 297 -15 296 118 29 59 chr12 2360511 2360579 -141921910 - MER103 DNA DNA -54 112 47 1127 189 102 81 chr12 2362179 2362458 -141920031 - MLT1B LTR MaLR 0 390 99 804 160 8 0 chr12 2362458 2362589 -141919900 + FLAM_C SINE Alu 1 132 -1 1127 189 102 81 chr12 2362589 2362690 -141919799 - MLT1B LTR MaLR -291 99 2 472 298 33 22 chr12 2364199 2364380 -141918109 - MIR3 SINE MIR -6 202 20 1694 186 4 0 chr12 2364554 2364829 -141917660 + AluJb SINE Alu 19 294 -18 752 256 128 9 chr12 2364877 2365088 -141917401 - MIR SINE MIR -11 251 16 318 258 0 21 chr12 2365676 2365769 -141916720 + MER103 DNA DNA 8 98 -68 494 235 27 54 chr12 2366310 2366459 -141916030 - MIR3 SINE MIR -48 160 16 188 305 0 34 chr12 2366516 2366575 -141915914 - MER5A DNA MER1_type -3 186 130 457 217 12 121 chr12 2366878 2367044 -141915445 - MER5A DNA MER1_type -41 148 1 1860 157 61 5 chr12 2367232 2367641 -141914848 - L1MA9 LINE L1 -844 5302 4670 4740 148 86 13 chr12 2367641 2368452 -141914037 + L1MA9 LINE L1 5303 6194 -118 321 26 0 0 chr12 2368452 2368490 -141913999 + (CA)n Simple_repeat Simple_repeat 1 38 0 4740 148 86 13 chr12 2368490 2368619 -141913870 + L1MA9 LINE L1 6194 6312 0 215 292 0 0 chr12 2368752 2368800 -141913689 - L2 LINE L2 -84 3188 3141 421 250 225 25 chr12 2369091 2369251 -141913238 - MIR SINE MIR -50 212 21 195 42 0 0 chr12 2369327 2369351 -141913138 + (TA)n Simple_repeat Simple_repeat 2 25 0 791 128 0 15 chr12 2370791 2370924 -141911565 + L1MB3 LINE L1 6052 6182 -1 972 323 177 21 chr12 2371407 2372165 -141910324 - L3 LINE CR1 -231 1346 471 1217 235 128 35 chr12 2373334 2373882 -141908607 - L1ME3A LINE L1 -11 6159 5561 655 248 80 36 chr12 2375154 2375395 -141907094 + MIR SINE MIR 12 262 0 194 211 39 39 chr12 2375870 2375922 -141906567 + MIR SINE MIR 181 232 -30 3226 196 39 20 chr12 2375926 2376641 -141905848 + L1MB2 LINE L1 5441 6169 -2 182 284 222 0 chr12 2377486 2377567 -141904922 - L2 LINE L2 -30 3242 3144 246 244 0 44 chr12 2377711 2377801 -141904688 + GA-rich Low_complexity Low_complexity 2 87 0 215 213 19 28 chr12 2377824 2377932 -141904557 + GA-rich Low_complexity Low_complexity 4 110 0 348 204 153 10 chr12 2380314 2380412 -141902077 + MIR SINE MIR 88 199 -63 761 242 175 47 chr12 2380457 2380800 -141901689 - L2 LINE L2 -9 3304 2918 258 234 43 64 chr12 2381483 2381577 -141900912 - MIR SINE MIR -81 181 90 397 297 0 25 chr12 2381719 2381876 -141900613 + MIR SINE MIR 38 256 -6 204 274 16 16 chr12 2382049 2382111 -141900378 + CT-rich Low_complexity Low_complexity 4 65 0 21 0 0 0 chr12 2382245 2382266 -141900223 + AT_rich Low_complexity Low_complexity 1 21 0 427 222 75 96 chr12 2383837 2384066 -141898423 - MIR SINE MIR -17 245 26 402 281 244 6 chr12 2384481 2384645 -141897844 + MIR SINE MIR 54 256 -6 368 296 19 56 chr12 2385267 2385429 -141897060 - MER5A DNA MER1_type -31 158 3 190 238 0 24 chr12 2385790 2385832 -141896657 - MIR3 SINE MIR -26 182 142 532 162 204 26 chr12 2385966 2386157 -141896332 + MLT1J LTR MaLR 229 453 -58 218 310 152 38 chr12 2386396 2386554 -141895935 + MIR3 SINE MIR 18 193 -15 208 329 26 13 chr12 2389275 2389351 -141893138 + MIR3 SINE MIR 83 159 -49 627 221 15 28 chr12 2389371 2389577 -141892912 - MIR SINE MIR 0 262 6 375 321 12 42 chr12 2389677 2389845 -141892644 + L1ME4a LINE L1 4857 5019 -1127 21 36 0 0 chr12 2390139 2390167 -141892322 + AT_rich Low_complexity Low_complexity 1 28 0 1059 255 134 34 chr12 2390208 2390655 -141891834 + L1MC4 LINE L1 6652 7143 -899 2042 173 49 117 chr12 2390657 2391334 -141891155 + L1MC4 LINE L1 7412 8042 0 332 283 134 5 chr12 2391458 2391828 -141890661 + L1ME4a LINE L1 5559 5997 -124 268 304 60 46 chr12 2392163 2392301 -141890188 - MIR SINE MIR -48 160 18 232 367 87 5 chr12 2392576 2392772 -141889717 + L3b LINE CR1 1276 1487 -96 225 244 27 20 chr12 2392819 2392906 -141889583 - MIR SINE MIR -78 130 94 183 218 164 0 chr12 2393249 2393304 -141889185 - L2 LINE L2 -9 3263 3200 660 232 0 0 chr12 2393498 2393623 -141888866 + FLAM_A SINE Alu 1 125 -8 388 305 40 13 chr12 2393629 2393780 -141888709 + MIR SINE MIR 53 207 -55 221 83 28 0 chr12 2395965 2396001 -141886488 + (TCCA)n Simple_repeat Simple_repeat 1 37 0 193 286 176 55 chr12 2396613 2396812 -141885677 - MIR SINE MIR 0 262 40 3340 134 104 18 chr12 2398004 2398684 -141883805 - Tigger3(Golem) DNA MER2_type -1 3028 2290 570 191 29 0 chr12 2398681 2398786 -141883703 - Tigger3(Golem) DNA MER2_type -2921 108 1 * 437 283 157 13 chr12 2398789 2399019 -141883470 - L1ME4a LINE L1 -24 6097 5835 300 305 34 17 chr12 2399228 2399403 -141883086 - L1ME4a LINE L1 -519 5602 5445 2515 57 3 3 chr12 2399650 2399948 -141882541 + AluY SINE Alu 1 298 -13 216 111 28 0 chr12 2401491 2401527 -141880962 + L2 LINE L2 3213 3249 -23 274 291 38 136 chr12 2401903 2402116 -141880373 - MIR SINE MIR -51 211 20 890 150 19 25 chr12 2402412 2402572 -141879917 + MER53 DNA DNA 24 182 -7 626 289 35 20 chr12 2404440 2404637 -141877852 - MIR SINE MIR -49 213 14 344 213 0 22 chr12 2405169 2405352 -141877137 + (TG)n Simple_repeat Simple_repeat 2 180 0 306 286 48 29 chr12 2407993 2408098 -141874391 - MIR3 SINE MIR -8 200 94 280 196 0 0 chr12 2408686 2408737 -141873752 + MIR SINE MIR 98 148 -114 191 138 0 0 chr12 2408758 2408787 -141873702 + L2 LINE L2 3211 3239 -33 592 279 135 5 chr12 2409246 2409461 -141873028 - MIR SINE MIR 0 262 20 358 284 203 31 chr12 2409778 2410000 -141872489 - L3 LINE CR1 -10 1567 1308 1127 129 5 55 chr12 2410065 2410282 -141872207 - MER20 DNA MER1_type -4 215 10 212 254 34 0 chr12 2412000 2412059 -141870430 - L2 LINE L2 -6 3307 3247 202 322 17 17 chr12 2412087 2412202 -141870287 - L2 LINE L2 -166 3106 2992 189 294 15 15 chr12 2414513 2414581 -141867908 + L2 LINE L2 2985 3052 -220 995 191 44 0 chr12 2414661 2414865 -141867624 + MER20 DNA MER1_type 4 216 -3 204 245 19 0 chr12 2415009 2415062 -141867427 + (AATTG)n Simple_repeat Simple_repeat 4 57 0 186 318 35 35 chr12 2415579 2415664 -141866825 + MIR3 SINE MIR 10 94 -114 492 240 19 0 chr12 2415806 2415910 -141866579 - MIR SINE MIR -115 147 42 2365 96 3 0 chr12 2416663 2416966 -141865523 + AluSq SINE Alu 1 304 -9 513 0 0 0 chr12 2417226 2417283 -141865206 + (TG)n Simple_repeat Simple_repeat 2 58 0 227 296 69 15 chr12 2417379 2417480 -141865009 - MIR SINE MIR -48 160 57 22 0 0 0 chr12 2418512 2418534 -141863955 + AT_rich Low_complexity Low_complexity 1 22 0 526 272 127 19 chr12 2418590 2418858 -141863631 + L3b LINE CR1 1109 1405 -178 362 277 9 27 chr12 2418998 2419110 -141863379 + MER5A DNA MER1_type 32 141 -48 197 69 52 35 chr12 2419124 2419182 -141863307 + (CACCC)n Simple_repeat Simple_repeat 1 59 0 409 296 9 0 chr12 2419612 2419720 -141862769 + MIR3 SINE MIR 87 195 -13 251 281 130 36 chr12 2420271 2420463 -141862026 + MLT1J LTR MaLR 42 251 -260 858 221 128 12 chr12 2420483 2420732 -141861757 + MLT1J LTR MaLR 226 503 -8 346 386 82 0 chr12 2420850 2421083 -141861406 + MIR SINE MIR 5 256 -6 187 94 0 62 chr12 2421121 2421153 -141861336 - L2 LINE L2 -43 3270 3241 844 339 200 3 chr12 2424055 2424619 -141857870 + L3 LINE CR1 56 730 -847 226 274 98 44 chr12 2424902 2425106 -141857383 + HAL1b LINE L1 517 731 -617 352 274 84 0 chr12 2425115 2425210 -141857279 + MIR SINE MIR 20 122 -140 28 95 0 0 chr12 2425285 2425369 -141857120 + AT_rich Low_complexity Low_complexity 1 84 0 1843 138 48 33 chr12 2425634 2425670 -141856819 - MER1B DNA MER1_type -2373 339 305 2022 145 119 38 chr12 2425670 2426064 -141856425 - MSTA LTR MaLR -2 426 1 1843 138 48 33 chr12 2426064 2426361 -141856128 - MER1B DNA MER1_type -2407 305 1 383 287 52 64 chr12 2426368 2426700 -141855789 + L1ME4a LINE L1 2459 2790 -3750 24 0 0 0 chr12 2426850 2426874 -141855615 + AT_rich Low_complexity Low_complexity 1 24 0 701 299 111 28 chr12 2427075 2427726 -141854763 + L1ME4a LINE L1 4312 5016 -1524 26 0 0 0 chr12 2427986 2428012 -141854477 + AT_rich Low_complexity Low_complexity 1 26 0 2330 90 0 17 chr12 2428378 2428678 -141853811 - AluSx SINE Alu -17 295 1 411 281 112 49 chr12 2428681 2428966 -141853523 + L1ME4a LINE L1 5352 5654 -886 798 254 146 36 chr12 2428972 2429554 -141852935 + L1ME4a LINE L1 5661 6306 -209 1020 287 151 37 chr12 2429618 2430186 -141852303 + L3 LINE CR1 741 1373 -204 918 177 21 52 chr12 2430394 2430586 -141851903 - MER5A DNA MER1_type 0 189 4 198 0 0 0 chr12 2430699 2430721 -141851768 + (T)n Simple_repeat Simple_repeat 1 22 0 22 0 0 0 chr12 2431568 2431590 -141850899 + AT_rich Low_complexity Low_complexity 1 22 0 194 353 37 37 chr12 2432066 2432202 -141850287 - L3b LINE CR1 -99 1484 1349 511 270 196 48 chr12 2432213 2432701 -141849788 - L2 LINE L2 -2 3311 2682 271 284 163 14 chr12 2432715 2432856 -141849633 - L3b LINE CR1 -243 1340 1179 481 248 20 46 chr12 2432914 2433067 -141849422 - MIR3 SINE MIR -11 197 49 292 277 88 36 chr12 2433982 2434119 -141848370 - MIR SINE MIR -75 187 44 214 297 126 34 chr12 2434337 2434512 -141847977 + MIR3 SINE MIR 9 199 -9 192 327 18 0 chr12 2435020 2435075 -141847414 + L2 LINE L2 3208 3263 -9 241 267 105 0 chr12 2435198 2435284 -141847205 + MIR SINE MIR 30 124 -138 224 288 15 0 chr12 2435398 2435464 -141847025 + L2 LINE L2 3186 3252 -20 404 291 37 38 chr12 2436592 2436800 -141845689 - MIR SINE MIR -37 225 16 735 229 24 6 chr12 2437483 2437653 -141844836 + MER97a DNA MER1_type? 5 177 -717 439 146 11 11 chr12 2437754 2437843 -141844646 + CT-rich Low_complexity Low_complexity 3 91 0 349 204 34 34 chr12 2438548 2438636 -141843853 - MIR3 SINE MIR -40 168 81 2846 0 0 0 chr12 2438724 2439019 -141843470 + AluYa5 SINE Alu 1 295 -16 272 273 23 55 chr12 2440069 2440197 -141842292 + MIR3 SINE MIR 72 195 -13 1582 219 73 20 chr12 2441036 2441489 -141841000 + Charlie4a DNA MER1_type 16 492 -16 301 272 136 39 chr12 2442004 2442107 -141840382 + MIR SINE MIR 33 145 -117 195 371 61 8 chr12 2442940 2443072 -141839417 - L3b LINE CR1 -4 1579 1441 307 344 48 32 chr12 2443180 2443369 -141839120 - L3b LINE CR1 -282 1301 1110 218 342 38 0 chr12 2444162 2444241 -141838248 - MIR3 SINE MIR -5 203 122 214 344 66 57 chr12 2444523 2444735 -141837754 + L2 LINE L2 2587 2800 -514 394 262 19 0 chr12 2444739 2444846 -141837643 - MER5B DNA MER1_type -2 176 68 1616 191 87 17 chr12 2444846 2445201 -141837288 - MER63 DNA MER1_type 0 1060 681 269 206 31 72 chr12 2445221 2445318 -141837171 + MER5B DNA MER1_type 84 176 -2 472 320 35 89 chr12 2445322 2445815 -141836674 + L2 LINE L2 2807 3272 0 190 342 45 27 chr12 2446061 2446172 -141836317 - L2 LINE L2 -37 3276 3164 2220 134 0 0 chr12 2446177 2446484 -141836005 + AluSx SINE Alu 1 307 -5 225 0 0 0 chr12 2446511 2446536 -141835953 + (GAAA)n Simple_repeat Simple_repeat 1 25 0 1669 145 51 77 chr12 2447030 2447444 -141835045 + L1MA9 LINE L1 5910 6312 0 190 306 0 0 chr12 2447676 2447738 -141834751 - L2 LINE L2 -956 2358 2297 702 314 108 20 chr12 2447817 2448416 -141834073 - L2 LINE L2 -964 2350 1699 275 231 0 46 chr12 2449245 2449310 -141833179 + MER94 DNA DNA 72 133 -1 217 312 130 0 chr12 2449377 2449454 -141833035 - L2 LINE L2 -17 3255 3169 412 354 118 22 chr12 2449873 2450500 -141831989 - L2 LINE L2 -624 2690 2004 193 273 161 12 chr12 2450525 2450686 -141831803 - L2 LINE L2 -1430 1884 1700 875 238 15 0 chr12 2450763 2450965 -141831524 - MER3 DNA MER1_type 0 209 5 267 167 0 0 chr12 2452427 2452469 -141830020 + MIR SINE MIR 59 100 -162 356 296 89 7 chr12 2452501 2452636 -141829853 + MIR SINE MIR 73 218 -44 1819 132 40 36 chr12 2452802 2453106 -141829383 + AluJo SINE Alu 5 309 -3 27 29 0 0 chr12 2453427 2453461 -141829028 + AT_rich Low_complexity Low_complexity 1 34 0 213 39 0 0 chr12 2453981 2454007 -141828482 + (TTTA)n Simple_repeat Simple_repeat 2 27 0 955 119 8 0 chr12 2454012 2454138 -141828351 - AluJb SINE Alu -30 282 156 1872 149 0 11 chr12 2454184 2454459 -141828030 - AluSx SINE Alu -6 306 35 2240 214 104 69 chr12 2457983 2458781 -141823708 - LTR1B LTR ERV1 0 826 1 385 250 151 13 chr12 2459077 2459229 -141823260 - MIR SINE MIR -62 200 28 287 207 0 58 chr12 2460399 2460486 -141822003 - MIR SINE MIR -70 192 111 851 211 47 30 chr12 2460542 2460774 -141821715 + MIR SINE MIR 10 245 -17 402 241 11 0 chr12 2461471 2461572 -141820917 + MIR SINE MIR 53 153 -63 991 153 49 178 chr12 2464113 2464478 -141818011 - L1MD2 LINE L1 -8 6234 5917 7555 199 72 12 chr12 2464479 2466298 -141816191 - L1MDa LINE L1 -4085 2455 529 232 179 0 0 chr12 2466602 2466641 -141815848 - L1M2 LINE L1 -807 5484 5446 873 119 106 0 chr12 2466705 2466856 -141815633 - L1M2 LINE L1 -696 5484 5318 905 211 32 0 chr12 2466857 2467042 -141815447 + L1MDa LINE L1 336 526 -6014 2075 156 8 0 chr12 2467043 2467395 -141815094 + L1MB3 LINE L1 5822 6176 -7 1106 181 174 40 chr12 2467408 2467706 -141814783 - L1MDa LINE L1 -6196 344 7 305 308 82 32 chr12 2468180 2468345 -141814144 + MIR3 SINE MIR 5 179 -29 234 91 0 0 chr12 2469604 2469637 -141812852 + (TG)n Simple_repeat Simple_repeat 2 34 0 270 176 0 0 chr12 2469673 2469724 -141812765 + (TG)n Simple_repeat Simple_repeat 2 52 0 297 128 0 0 chr12 2469762 2469809 -141812680 + (TG)n Simple_repeat Simple_repeat 2 48 0 2297 102 3 0 chr12 2471996 2472291 -141810198 - AluSx SINE Alu -16 296 1 214 306 207 29 chr12 2472681 2472923 -141809566 + L2 LINE L2 2898 3182 -90 438 306 22 8 chr12 2473016 2473150 -141809339 + MIR SINE MIR 21 156 -106 523 207 41 0 chr12 2473618 2473739 -141808750 - MER103 DNA DNA -29 137 12 204 329 13 0 chr12 2475029 2475105 -141807384 + L2 LINE L2 2980 3056 -257 339 198 9 19 chr12 2475307 2475413 -141807076 + GA-rich Low_complexity Low_complexity 3 107 0 600 216 76 29 chr12 2475427 2475598 -141806891 - MIR SINE MIR -76 186 8 479 267 93 17 chr12 2475752 2475924 -141806565 - MIR SINE MIR -71 191 7 344 258 106 23 chr12 2476348 2476480 -141806009 + MER5B DNA MER1_type 1 143 -35 277 359 31 8 chr12 2476889 2477017 -141805472 - L2 LINE L2 -8 3264 3134 232 167 24 0 chr12 2477516 2477558 -141804931 + GA-rich Low_complexity Low_complexity 2 44 0 212 69 0 0 chr12 2478014 2478043 -141804446 - MIR SINE MIR -64 144 116 2037 141 79 25 chr12 2478085 2478489 -141804000 - MSTB LTR MaLR 0 426 1 414 0 0 0 chr12 2479077 2479123 -141803366 + (TG)n Simple_repeat Simple_repeat 2 47 0 2175 122 3 3 chr12 2480605 2480899 -141801590 + AluSc SINE Alu 1 294 -15 352 333 0 23 chr12 2481522 2481654 -141800835 - MER94 DNA DNA 0 134 6 346 248 55 9 chr12 2481668 2481777 -141800712 + MER117 DNA MER1_type 1 114 -83 278 311 0 0 chr12 2482049 2482123 -141800366 + L3 LINE CR1 1503 1576 -1 204 288 0 17 chr12 2482269 2482328 -141800161 - MIR SINE MIR -105 157 100 704 284 47 0 chr12 2482331 2482542 -141799947 + MIR SINE MIR 28 248 -14 181 271 51 0 chr12 2482614 2482673 -141799816 - MIR SINE MIR -175 87 26 278 309 39 34 chr12 2484103 2484307 -141798182 + L1ME4a LINE L1 5738 5942 -179 181 373 88 0 chr12 2485156 2485258 -141797231 - L2 LINE L2 -29 3284 3174 1601 222 61 57 chr12 2485530 2486007 -141796482 - MLT1H LTR MaLR 0 549 71 2086 113 11 3 chr12 2486576 2486894 -141795595 - AluSq SINE Alu 0 320 1 1817 188 93 19 chr12 2487877 2488307 -141794182 - MLT1C LTR MaLR 0 467 6 1834 144 38 49 chr12 2488893 2489261 -141793228 - MLT1A1 LTR MaLR -1 364 1 426 315 43 22 chr12 2490090 2490274 -141792215 - MER5A DNA MER1_type 0 189 2 * 503 314 0 13 chr12 2490274 2490426 -141792063 - MIR3 SINE MIR -47 161 12 351 286 112 0 chr12 2490577 2490675 -141791814 + MIR SINE MIR 133 241 -21 334 336 0 0 chr12 2491695 2491811 -141790678 + MIR3 SINE MIR 68 183 -25 375 212 0 0 chr12 2492428 2492513 -141789976 + (TCCA)n Simple_repeat Simple_repeat 4 88 0 286 297 85 48 chr12 2492632 2492797 -141789692 - L3 LINE CR1 -144 1433 1263 240 175 167 53 chr12 2492879 2492993 -141789496 - MER113 DNA MER1_type? -306 215 89 328 341 51 7 chr12 2493394 2493532 -141788957 - MIR SINE MIR -111 151 8 195 373 40 0 chr12 2493565 2493640 -141788849 - MIR3 SINE MIR -40 168 91 736 263 81 16 chr12 2495709 2495956 -141786533 - MLT1L LTR MaLR -4 611 349 388 284 39 8 chr12 2496429 2496556 -141785933 + MIR SINE MIR 58 188 -74 890 203 0 15 chr12 2496596 2496934 -141785555 + (TGG)n Simple_repeat Simple_repeat 1 332 0 719 209 0 11 chr12 2496964 2497146 -141785343 + (TGG)n Simple_repeat Simple_repeat 1 180 0 903 178 0 4 chr12 2497181 2497413 -141785076 + (TGG)n Simple_repeat Simple_repeat 1 231 0 195 366 0 0 chr12 2498159 2498230 -141784259 + L3 LINE CR1 1492 1562 -15 1875 159 26 0 chr12 2499084 2499430 -141783059 - L1MB4 LINE L1 0 6180 5826 358 291 23 0 chr12 2500978 2501064 -141781425 - MIR SINE MIR -64 144 57 231 330 10 10 chr12 2501364 2501461 -141781028 + GA-rich Low_complexity Low_complexity 3 99 0 1981 148 92 14 chr12 2501565 2501936 -141780553 - MSTB LTR MaLR 0 426 27 2137 136 32 70 chr12 2501958 2502398 -141780091 - MSTB-int LTR MaLR 0 1651 1229 222 317 37 0 chr12 2503255 2503337 -141779152 + MIR3 SINE MIR 121 205 -3 271 309 66 66 chr12 2503570 2503858 -141778631 + L2 LINE L2 2329 2616 -698 278 180 16 0 chr12 2504993 2505054 -141777435 + (TGGG)n Simple_repeat Simple_repeat 3 64 0 869 171 0 11 chr12 2505088 2505269 -141777220 + (TGGA)n Simple_repeat Simple_repeat 1 179 0 243 257 40 0 chr12 2505269 2505343 -141777146 + (TGGG)n Simple_repeat Simple_repeat 1 77 0 762 211 0 0 chr12 2505343 2505523 -141776966 + (TGGA)n Simple_repeat Simple_repeat 1 180 0 742 198 7 0 chr12 2505550 2505862 -141776627 + (TGGA)n Simple_repeat Simple_repeat 1 314 0 348 284 26 17 chr12 2506412 2506528 -141775961 - MER5A DNA MER1_type -14 175 59 1919 153 14 23 chr12 2508130 2508476 -141774013 - MER61A LTR ERV1 0 343 1 2759 36 0 0 chr12 2509247 2509553 -141772936 + AluY SINE Alu 1 306 -5 482 317 12 0 chr12 2512515 2512676 -141769813 + L2 LINE L2 110 272 -3042 435 270 101 14 chr12 2512703 2512851 -141769638 - MER58B DNA MER1_type -3 338 178 2177 259 108 132 chr12 2512894 2514262 -141768227 + L2 LINE L2 361 1760 -1553 1266 167 22 61 chr12 2514262 2514573 -141767916 + MER33 DNA MER1_type 26 324 0 2177 259 108 132 chr12 2514573 2515917 -141766572 + L2 LINE L2 1760 3313 0 218 323 32 0 chr12 2517819 2517881 -141764608 - MIR SINE MIR -125 83 20 1983 108 23 96 chr12 2517946 2518289 -141764200 - AluYb8 SINE Alu 0 318 1 496 277 18 119 chr12 2518936 2519362 -141763127 - MLT1I LTR MaLR -20 389 1 2754 275 66 73 chr12 2520020 2521583 -141760906 + L2 LINE L2 1752 3312 -1 2617 37 10 0 chr12 2521885 2522183 -141760306 - AluY SINE Alu -10 301 1 24 53 0 0 chr12 2522417 2522455 -141760034 + AT_rich Low_complexity Low_complexity 1 38 0 258 265 0 15 chr12 2522551 2522619 -141759870 - L2 LINE L2 -212 3060 2994 234 284 45 0 chr12 2523201 2523268 -141759221 - L2 LINE L2 -3 3310 3241 794 268 49 8 chr12 2523898 2524144 -141758345 + MIR SINE MIR 5 260 -2 222 345 30 18 chr12 2525636 2525804 -141756685 + MIR3 SINE MIR 24 193 -15 293 255 106 28 chr12 2526228 2526369 -141756120 - MIR3 SINE MIR -16 192 41 329 258 161 0 chr12 2527738 2527862 -141754627 + MIR3 SINE MIR 29 172 -36 192 40 0 0 chr12 2527973 2527998 -141754491 + (TTTTG)n Simple_repeat Simple_repeat 2 26 0 188 250 36 0 chr12 2528272 2528328 -141754161 - L2 LINE L2 -3 3269 3212 24 0 0 0 chr12 2528750 2528774 -141753715 + AT_rich Low_complexity Low_complexity 1 24 0 670 274 139 22 chr12 2529511 2529734 -141752755 + MIR SINE MIR 12 260 -2 1901 143 21 0 chr12 2529818 2530105 -141752384 - AluSx SINE Alu -18 294 2 228 219 27 0 chr12 2530115 2530188 -141752301 - L1MB7 LINE L1 -1 6183 6109 * 1574 270 50 79 chr12 2530178 2530658 -141751831 - L1ME LINE L1 -4331 1749 1257 2413 85 3 0 chr12 2530658 2530953 -141751536 - AluSg1 SINE Alu -13 296 1 1574 270 50 79 chr12 2530953 2531826 -141750663 - L1ME LINE L1 -4823 1257 531 337 286 29 0 chr12 2532588 2532693 -141749796 - MIR3 SINE MIR -45 163 56 2416 102 0 3 chr12 2533447 2533761 -141748728 + AluSq SINE Alu 1 313 0 2480 57 0 0 chr12 2533992 2534302 -141748187 + AluY SINE Alu 1 310 0 498 290 35 21 chr12 2534310 2534705 -141747784 + L1MEd LINE L1 691 1081 -5048 375 289 108 52 chr12 2534793 2534987 -141747502 + L1ME3A LINE L1 5959 6163 -7 235 217 60 36 chr12 2535134 2535217 -141747272 + MER117 DNA MER1_type 32 116 -81 461 335 138 13 chr12 2535283 2535507 -141746982 + MIR SINE MIR 11 262 0 543 295 33 0 chr12 2536464 2536674 -141745815 + LTR33 LTR ERVL 20 236 -285 254 279 29 0 chr12 2537355 2537423 -141745066 + MER5A DNA MER1_type 18 87 -102 599 332 101 8 chr12 2537537 2537775 -141744714 - MIR SINE MIR 0 262 3 929 212 0 6 chr12 2538189 2538354 -141744135 - FRAM SINE Alu -2 164 1 428 282 41 100 chr12 2539257 2539576 -141742913 + L2 LINE L2 2972 3271 -1 227 328 0 0 chr12 2539566 2539633 -141742856 + MIR3 SINE MIR 136 202 -6 * 587 316 35 4 chr12 2541333 2541561 -141740928 + MIR SINE MIR 9 243 -19 739 339 60 37 chr12 2541568 2541999 -141740490 - L3 LINE CR1 -16 1561 1121 327 333 91 0 chr12 2542245 2542377 -141740112 - L2 LINE L2 -541 2773 2630 286 238 0 112 chr12 2542431 2542574 -141739915 + L1ME4a LINE L1 5992 6118 -3 652 304 87 58 chr12 2542944 2543476 -141739013 - L2 LINE L2 -2 3270 2730 646 167 30 8 chr12 2544522 2544654 -141737835 - L1MB3 LINE L1 0 6183 6049 279 282 51 0 chr12 2544941 2545019 -141737470 + MIR SINE MIR 111 192 -70 237 65 0 0 chr12 2548071 2548102 -141734387 + (TTTC)n Simple_repeat Simple_repeat 2 32 0 222 344 133 20 chr12 2548868 2549019 -141733470 - L3 LINE CR1 -1398 179 12 1827 203 54 14 chr12 2549923 2550367 -141732122 + L1ME1 LINE L1 5700 6161 -5 308 164 15 0 chr12 2550394 2550461 -141732028 + GA-rich Low_complexity Low_complexity 2 69 0 374 57 19 0 chr12 2550593 2550646 -141731843 + (GGA)n Simple_repeat Simple_repeat 2 55 0 315 0 0 0 chr12 2550937 2550972 -141731517 + (TC)n Simple_repeat Simple_repeat 2 36 0 978 79 29 14 chr12 2552986 2553126 -141729363 - L1PA8 LINE L1 0 6172 6031 286 221 47 47 chr12 2553851 2553937 -141728552 - L2 LINE L2 -11 3261 3176 202 226 38 0 chr12 2554923 2554976 -141727513 + CT-rich Low_complexity Low_complexity 6 60 0 389 331 64 17 chr12 2555006 2555178 -141727311 - MER5A DNA MER1_type -4 185 6 306 0 0 0 chr12 2556944 2556978 -141725511 + (CA)n Simple_repeat Simple_repeat 1 34 0 2514 67 0 13 chr12 2559899 2560214 -141722275 + AluY SINE Alu 1 311 0 238 186 23 0 chr12 2560429 2560472 -141722017 + L2 LINE L2 3267 3310 -3 714 229 30 61 chr12 2561230 2561461 -141721028 - L2 LINE L2 0 3313 3090 546 186 132 12 chr12 2561842 2562009 -141720480 - MER5A DNA MER1_type -2 187 1 731 175 145 6 chr12 2562095 2562261 -141720228 - MER5A DNA MER1_type 0 189 1 775 246 29 19 chr12 2562476 2562683 -141719806 + MER63A DNA MER1_type 1 209 -1 1074 117 0 0 chr12 2564488 2564633 -141717856 + FRAM SINE Alu 1 140 -36 484 303 96 5 chr12 2565342 2565530 -141716959 + MIR SINE MIR 58 262 0 373 298 126 7 chr12 2565565 2565716 -141716773 - MIR3 SINE MIR -6 202 34 454 370 45 4 chr12 2566588 2566831 -141715658 - MIR SINE MIR -7 255 3 1742 188 10 13 chr12 2567344 2567647 -141714842 + AluJo SINE Alu 1 302 -10 2784 216 49 11 chr12 2568328 2568936 -141713553 + MER82 DNA MER2_type 14 644 -9 243 125 0 0 chr12 2570546 2570586 -141711903 + (CA)n Simple_repeat Simple_repeat 2 41 0 955 212 30 20 chr12 2571114 2571317 -141711172 + MER63A DNA MER1_type 1 205 -5 1061 174 11 0 chr12 2572686 2572864 -141709625 + MER5A DNA MER1_type 4 183 -6 2064 274 157 24 chr12 2574857 2576148 -141706341 - L2 LINE L2 0 3313 1850 2583 54 0 0 chr12 2577301 2577599 -141704890 + AluY SINE Alu 1 298 -13 213 291 154 18 chr12 2577908 2578018 -141704471 - MIR3 SINE MIR -72 136 12 233 223 58 39 chr12 2581470 2581573 -141700916 + L3b LINE CR1 1144 1248 -335 300 258 83 17 chr12 2581782 2581902 -141700587 - MIR SINE MIR -70 192 65 266 379 0 10 chr12 2583271 2583374 -141699115 - L2 LINE L2 -82 3190 3089 560 301 79 20 chr12 2583459 2583864 -141698625 - MLT1J2 LTR MaLR -2 448 20 267 309 92 44 chr12 2584016 2584265 -141698224 - L2 LINE L2 -432 2882 2622 285 238 125 12 chr12 2587206 2587286 -141695203 + MIR3 SINE MIR 120 208 0 2159 243 17 22 chr12 2587544 2588084 -141694405 - LTR31 LTR ERV1 -9 610 74 211 308 46 0 chr12 2588407 2588472 -141694017 + L2 LINE L2 3237 3304 -9 248 303 90 49 chr12 2590109 2590231 -141692258 - MIR SINE MIR -116 146 20 555 226 71 19 chr12 2590291 2590446 -141692043 + MIR3 SINE MIR 7 169 -39 266 309 81 52 chr12 2590767 2590977 -141691512 - L3 LINE CR1 -11 1566 1351 201 167 0 0 chr12 2591288 2591324 -141691165 + CT-rich Low_complexity Low_complexity 1 36 0 198 216 52 95 chr12 2592774 2592890 -141689599 + MIR SINE MIR 109 219 -43 402 353 143 28 chr12 2593572 2594034 -141688455 - L3 LINE CR1 -87 1490 976 2386 100 0 0 chr12 2594082 2594382 -141688107 + AluY SINE Alu 1 300 -11 2074 139 0 22 chr12 2594391 2594708 -141687781 + AluJo SINE Alu 1 310 -2 350 308 85 8 chr12 2595388 2595518 -141686971 + MIR3 SINE MIR 9 148 -60 1952 177 0 0 chr12 2595525 2595824 -141686665 + AluJo SINE Alu 5 303 -9 474 227 133 0 chr12 2595882 2596010 -141686479 - MIR SINE MIR -109 153 9 640 266 106 30 chr12 2596206 2596443 -141686046 + MIR SINE MIR 6 260 -2 297 298 0 11 chr12 2597413 2597507 -141684982 + T-rich Low_complexity Low_complexity 3 95 0 205 294 92 37 chr12 2597510 2597619 -141684870 - MIR3 SINE MIR -41 167 53 293 244 78 43 chr12 2597994 2598109 -141684380 + MIR SINE MIR 46 164 -98 480 266 176 23 chr12 2598821 2599208 -141683281 - LTR33 LTR ERVL -58 463 18 563 266 136 10 chr12 2599437 2599636 -141682853 - MER58A DNA MER1_type 0 224 1 1537 213 14 72 chr12 2599811 2600225 -141682264 - MLT1B LTR MaLR 0 390 1 8961 100 26 8 chr12 2603471 2604735 -141677754 - HSMAR1 DNA Mariner 0 1287 1 254 164 18 0 chr12 2606597 2606652 -141675837 + (TG)n Simple_repeat Simple_repeat 1 56 0 22 0 0 0 chr12 2607033 2607055 -141675434 + AT_rich Low_complexity Low_complexity 1 22 0 476 299 24 37 chr12 2607381 2607545 -141674944 + MIR3 SINE MIR 36 197 -11 21 36 0 0 chr12 2607557 2607585 -141674904 + AT_rich Low_complexity Low_complexity 1 28 0 466 285 163 19 chr12 2611157 2611427 -141671062 - L2 LINE L2 0 3313 3005 332 300 50 0 chr12 2612074 2612194 -141670295 + MIR3 SINE MIR 42 167 -41 185 271 0 34 chr12 2612284 2612343 -141670146 + MIR3 SINE MIR 149 205 -3 255 301 14 0 chr12 2616821 2616894 -141665595 + L2 LINE L2 3240 3313 0 22 0 0 0 chr12 2617910 2617932 -141664557 + AT_rich Low_complexity Low_complexity 1 22 0 347 284 12 0 chr12 2617954 2618035 -141664454 + L2 LINE L2 3232 3313 0 231 88 0 0 chr12 2618240 2618274 -141664215 + (TGAA)n Simple_repeat Simple_repeat 4 37 0 324 237 223 22 chr12 2618575 2618714 -141663775 - MIR SINE MIR -93 169 3 1289 201 59 7 chr12 2618796 2619085 -141663404 - MER33 DNA MER1_type -4 320 17 207 0 0 0 chr12 2619823 2619846 -141662643 + (A)n Simple_repeat Simple_repeat 1 23 0 3500 136 34 37 chr12 2621709 2622354 -141660135 - L1MA3 LINE L1 0 6305 5663 229 252 35 61 chr12 2622950 2623065 -141659424 + L3 LINE CR1 1439 1550 -27 454 204 59 150 chr12 2623086 2623306 -141659183 + MER112 DNA MER1_type 48 247 -13 216 338 93 25 chr12 2623617 2623821 -141658668 + L2 LINE L2 2426 2643 -671 670 231 11 33 chr12 2624097 2624161 -141658328 - MER5B DNA MER1_type 0 178 114 2898 7 3 0 chr12 2624161 2624471 -141658018 + AluYb8 SINE Alu 1 311 -7 670 231 11 33 chr12 2624471 2624588 -141657901 - MER5B DNA MER1_type -64 114 1 301 347 122 0 chr12 2624856 2625003 -141657486 + MIR SINE MIR 63 227 -35 236 315 178 7 chr12 2625079 2625225 -141657264 - MIR SINE MIR -3 259 89 394 279 120 22 chr12 2626179 2626362 -141656127 + MIR SINE MIR 62 262 0 302 316 107 20 chr12 2626952 2627196 -141655293 - MLT1J LTR MaLR -22 489 225 2359 150 48 7 chr12 2627246 2627904 -141654585 + L1MB3 LINE L1 5451 6183 0 368 261 147 41 chr12 2628198 2628271 -141654218 - MER112 DNA MER1_type 0 260 196 3179 185 49 0 chr12 2628271 2628921 -141653568 - L1MB7 LINE L1 -1 6183 5502 368 261 147 41 chr12 2628921 2629065 -141653424 - MER112 DNA MER1_type -64 196 20 658 259 25 84 chr12 2629976 2630250 -141652239 - MIR SINE MIR -3 259 2 207 100 0 0 chr12 2631003 2631033 -141651456 + (T)n Simple_repeat Simple_repeat 1 30 0 447 68 0 0 chr12 2631272 2631331 -141651158 + (TCC)n Simple_repeat Simple_repeat 2 60 0 1083 106 18 0 chr12 2631437 2631781 -141650708 + (TCC)n Simple_repeat Simple_repeat 1 350 0 407 43 57 0 chr12 2631790 2631860 -141650629 + CT-rich Low_complexity Low_complexity 2 75 0 1049 99 11 17 chr12 2631861 2632042 -141650447 + (TCC)n Simple_repeat Simple_repeat 1 180 0 1495 169 26 38 chr12 2632053 2632319 -141650170 - AluJo SINE Alu 0 312 50 180 0 0 0 chr12 2636208 2636228 -141646261 + (TCTG)n Simple_repeat Simple_repeat 1 20 0 500 257 70 48 chr12 2636737 2636885 -141645604 - L2 LINE L2 0 3313 3153 2696 13 0 0 chr12 2636885 2637188 -141645301 - AluY SINE Alu -8 303 1 500 257 70 48 chr12 2637188 2637272 -141645217 - L2 LINE L2 -160 3153 3072 446 240 123 18 chr12 2637585 2637756 -141644733 - L2 LINE L2 -747 2567 2379 23 0 0 0 chr12 2638592 2638615 -141643874 + AT_rich Low_complexity Low_complexity 1 23 0 1545 163 7 53 chr12 2638615 2638915 -141643574 - AluJo SINE Alu -26 286 1 274 287 0 37 chr12 2639871 2639979 -141642510 + MER5A DNA MER1_type 21 124 -65 466 270 85 36 chr12 2640164 2640399 -141642090 - MIR SINE MIR 0 262 19 219 222 0 0 chr12 2640673 2640718 -141641771 + CT-rich Low_complexity Low_complexity 3 47 0 805 104 0 17 chr12 2641061 2641176 -141641313 + AluSg/x SINE Alu 188 300 -12 293 239 85 46 chr12 2642661 2642791 -141639698 + MIR SINE MIR 74 208 -54 180 318 16 0 chr12 2642898 2642961 -141639528 + MIR3 SINE MIR 145 208 0 211 200 0 0 chr12 2643595 2643630 -141638859 + polypurine Low_complexity Low_complexity 3 37 0 582 306 116 36 chr12 2645979 2646368 -141636121 + L1MC5 LINE L1 7513 7932 -29 202 243 0 43 chr12 2647421 2647491 -141634998 + CT-rich Low_complexity Low_complexity 1 67 0 323 299 51 22 chr12 2647527 2647664 -141634825 + MER91A DNA MER1_type 55 195 -1 886 293 85 34 chr12 2648128 2648970 -141633519 - L2 LINE L2 -8 3305 2425 1747 226 67 7 chr12 2650705 2651139 -141631350 - MLT1C LTR MaLR -2 465 6 269 164 15 75 chr12 2651284 2651351 -141631138 - L2 LINE L2 -11 3261 3199 * 546 214 84 39 chr12 2651332 2651486 -141631003 - MIR SINE MIR -96 166 6 189 0 0 0 chr12 2651724 2651745 -141630744 + (T)n Simple_repeat Simple_repeat 1 21 0 440 217 0 12 chr12 2651926 2652009 -141630480 + MER81 DNA DNA 1 82 -32 306 363 62 27 chr12 2652521 2652777 -141629712 - L1MEd LINE L1 -4240 2070 1806 1014 305 65 42 chr12 2652836 2653853 -141628636 - L1MEd LINE L1 -4456 1673 622 271 258 0 16 chr12 2654132 2654194 -141628295 - L1MEd LINE L1 -6058 61 1 359 308 49 35 chr12 2654197 2654340 -141628149 + MIR SINE MIR 46 190 -72 367 337 148 12 chr12 2658380 2658549 -141623940 + L3 LINE CR1 1169 1360 -217 777 282 48 9 chr12 2659881 2660108 -141622381 - MIR SINE MIR -14 248 13 481 248 67 0 chr12 2660289 2660394 -141622095 + MER81 DNA DNA 2 113 -1 680 206 11 0 chr12 2661402 2661690 -141620799 + (TG)n Simple_repeat Simple_repeat 1 291 0 364 256 35 0 chr12 2661690 2661776 -141620713 - MER5B DNA MER1_type -79 99 11 288 302 58 38 chr12 2661860 2662042 -141620447 - MIR SINE MIR -46 216 35 268 404 0 0 chr12 2662147 2662251 -141620238 + MIR SINE MIR 33 136 -72 3883 141 33 11 chr12 2662747 2663385 -141619104 - MER39B LTR ERV1 -1 652 1 463 354 53 5 chr12 2663606 2663812 -141618677 - MIR SINE MIR -37 225 10 184 351 99 45 chr12 2665251 2665584 -141616905 + L2 LINE L2 2916 3266 -6 630 195 0 46 chr12 2667285 2667455 -141615034 - MIR SINE MIR -62 146 18 251 272 0 0 chr12 2667598 2667679 -141614810 + (CAT)n Simple_repeat Simple_repeat 2 82 0 203 284 54 40 chr12 2668489 2668563 -141613926 - L2 LINE L2 -616 2698 2624 2002 85 0 4 chr12 2668862 2669121 -141613368 + AluSx SINE Alu 1 258 -54 217 122 0 41 chr12 2670445 2670494 -141611995 + (GGAGA)n Simple_repeat Simple_repeat 1 47 0 390 305 79 42 chr12 2672223 2672413 -141610076 - MIR SINE MIR -52 210 14 607 273 36 16 chr12 2674330 2674579 -141607910 + L1M4 LINE L1 4357 4610 -1536 180 342 26 26 chr12 2678809 2678885 -141603604 - L2 LINE L2 -15 3298 3223 219 312 145 22 chr12 2679074 2679212 -141603277 - MIR SINE MIR -6 256 102 202 315 41 14 chr12 2679262 2679335 -141603154 - MIR SINE MIR -24 238 164 257 233 68 27 chr12 2680037 2680110 -141602379 - L3 LINE CR1 -171 1406 1331 495 296 292 17 chr12 2680189 2680960 -141601529 - L2 LINE L2 -101 3212 2218 225 352 14 35 chr12 2681258 2681400 -141601089 - L2 LINE L2 -467 2847 2709 324 308 85 46 chr12 2683224 2683354 -141599135 + MER20B DNA MER1_type 42 176 -607 461 238 89 83 chr12 2684601 2684689 -141597800 - MIR SINE MIR 0 262 171 1540 164 26 48 chr12 2684689 2685000 -141597489 + AluJo SINE Alu 1 304 -8 461 238 89 83 chr12 2685000 2685079 -141597410 - MIR SINE MIR -91 171 94 182 374 12 0 chr12 2685842 2685925 -141596564 + L2 LINE L2 3189 3272 0 1288 136 189 12 chr12 2687645 2687888 -141594601 + AluJo SINE Alu 1 286 -26 657 264 88 0 chr12 2688516 2688709 -141593780 - MIR SINE MIR -45 217 8 200 111 28 0 chr12 2690387 2690423 -141592066 + CT-rich Low_complexity Low_complexity 3 39 0 195 198 11 44 chr12 2693171 2693262 -141589227 + T-rich Low_complexity Low_complexity 2 89 0 215 298 0 40 chr12 2693466 2693590 -141588899 + T-rich Low_complexity Low_complexity 1 119 0 486 172 0 0 chr12 2694812 2694911 -141587578 + (TG)n Simple_repeat Simple_repeat 1 99 0 207 279 78 47 chr12 2695526 2695655 -141586834 - MIR SINE MIR -53 209 77 1008 279 147 44 chr12 2697014 2698050 -141584439 - L2 LINE L2 -2 3311 2104 305 294 154 7 chr12 2698524 2698667 -141583822 + MIR3 SINE MIR 38 201 -7 314 310 20 10 chr12 2699164 2699264 -141583225 - MIR SINE MIR -63 145 45 192 323 54 11 chr12 2700282 2700375 -141582114 - MIR SINE MIR -66 142 46 28 29 0 0 chr12 2703481 2703516 -141578973 + AT_rich Low_complexity Low_complexity 1 35 0 209 56 0 28 chr12 2705279 2705315 -141577174 + (TTTTG)n Simple_repeat Simple_repeat 2 36 0 330 26 0 0 chr12 2705757 2705772 -141576717 + (GA)n Simple_repeat Simple_repeat 1 54 0 330 26 0 0 chr12 2705772 2705811 -141576678 + (GA)n Simple_repeat Simple_repeat 1 39 0 1952 134 0 50 chr12 2706861 2707182 -141575307 + AluJo SINE Alu 1 305 -7 201 231 0 0 chr12 2709787 2709826 -141572663 + C-rich Low_complexity Low_complexity 3 41 0 660 231 65 0 chr12 2712194 2712363 -141570126 - MIR SINE MIR -34 228 49 206 200 0 0 chr12 2713354 2713389 -141569100 + polypurine Low_complexity Low_complexity 1 35 0 271 281 48 0 chr12 2714550 2714634 -141567855 + MIR SINE MIR 62 148 -74 6564 135 27 9 chr12 2714712 2715879 -141566610 + L1 LINE L1 3732 4919 -1227 448 326 30 33 chr12 2715875 2716179 -141566310 + HAL1 LINE L1 1445 1747 -760 * 477 247 84 59 chr12 2716444 2716683 -141565806 + L1MDa LINE L1 2315 2559 -3981 351 328 139 14 chr12 2716690 2717367 -141565122 + L1MDa LINE L1 2567 3423 -3117 6193 122 81 31 chr12 2717367 2718540 -141563949 + Tigger3b DNA MER2_type 1 1231 0 351 328 139 14 chr12 2718540 2718914 -141563575 + L1MDa LINE L1 3423 3749 -2791 2349 96 0 0 chr12 2719563 2719855 -141562634 + AluSg SINE Alu 1 292 -18 1675 195 0 14 chr12 2719997 2720284 -141562205 + AluJo SINE Alu 3 285 -27 417 39 0 0 chr12 2720284 2720335 -141562154 + (CA)n Simple_repeat Simple_repeat 2 52 0 529 344 98 17 chr12 2720356 2720714 -141561775 + L1MDa LINE L1 3704 4090 -2450 416 345 58 9 chr12 2720697 2720920 -141561569 + L1MDa LINE L1 4545 4778 -1762 * 506 324 100 28 chr12 2720906 2720980 -141561509 + L1ME4a LINE L1 4475 4542 -1998 2347 106 0 0 chr12 2720980 2721291 -141561198 + AluY SINE Alu 1 311 0 506 324 100 28 chr12 2721291 2721506 -141560983 + L1ME4a LINE L1 4542 4785 -1755 1210 299 39 25 chr12 2721514 2722260 -141560229 + L1ME4a LINE L1 4891 5646 -894 1988 113 0 0 chr12 2722276 2722567 -141559922 + L1PB2 LINE L1 5429 5719 -432 786 134 140 23 chr12 2722565 2722736 -141559753 + L1PB2 LINE L1 5960 6150 -1 * 2695 43 3 0 chr12 2722755 2723059 -141559430 - AluY SINE Alu -6 305 1 413 315 148 19 chr12 2723066 2723659 -141558830 + L1ME4a LINE L1 5657 6326 -238 2087 150 3 0 chr12 2724927 2725227 -141557262 + AluSx SINE Alu 1 301 -11 198 175 25 0 chr12 2725917 2725957 -141556532 + MIR3 SINE MIR 165 205 -3 2483 103 66 15 chr12 2727471 2727878 -141554611 - MSTA LTR MaLR 0 428 1 1403 77 101 0 chr12 2728266 2728475 -141554014 + MER30 DNA MER1_type 1 230 0 369 312 98 0 chr12 2728732 2728905 -141553584 + MER91A DNA MER1_type 4 193 -3 401 308 24 35 chr12 2729029 2729198 -141553291 + MER5A DNA MER1_type 2 168 -21 234 329 20 34 chr12 2729065 2729214 -141553275 - MER5A DNA MER1_type -27 162 16 * 235 345 86 2 chr12 2729306 2729433 -141553056 + MIR SINE MIR 16 152 -56 2258 103 17 0 chr12 2729598 2729898 -141552591 + AluSg SINE Alu 1 305 -5 2349 96 0 0 chr12 2730039 2730332 -141552157 - AluSc SINE Alu -16 293 1 266 284 116 13 chr12 2730345 2730500 -141551989 + L1ME4a LINE L1 6326 6496 -19 1720 226 82 5 chr12 2731402 2731831 -141550658 - MLT1C LTR MaLR 0 467 6 237 185 111 0 chr12 2732063 2732117 -141550372 - MIR SINE MIR -201 61 2 996 218 223 47 chr12 2732147 2732213 -141550276 - MLT1E3 LTR MaLR -1 623 570 2277 93 34 0 chr12 2732213 2732504 -141549985 + AluSp SINE Alu 1 301 -12 996 218 223 47 chr12 2732504 2732846 -141549643 - MLT1E3 LTR MaLR -54 570 143 253 284 0 73 chr12 2733302 2733443 -141549046 + G-rich Low_complexity Low_complexity 1 130 0 754 209 115 13 chr12 2734107 2734341 -141548148 - MER20B DNA MER1_type 0 783 526 996 274 150 19 chr12 2734499 2734967 -141547522 - MER20B DNA MER1_type -253 530 2 337 316 184 0 chr12 2735024 2735160 -141547329 - MIR SINE MIR -56 206 46 404 276 164 51 chr12 2735734 2736009 -141546480 + L1MC4a LINE L1 5862 6167 -1641 559 265 12 35 chr12 2737244 2737414 -141545075 + Charlie8 DNA MER1_type 115 280 -2137 303 242 0 0 chr12 2740313 2740375 -141542114 + MIR SINE MIR 195 256 -6 190 252 122 89 chr12 2741215 2741338 -141541151 - MIR SINE MIR -92 170 44 261 300 0 0 chr12 2741426 2741496 -141540993 + (TG)n Simple_repeat Simple_repeat 1 70 0 1356 78 16 3 chr12 2741870 2742615 -141539874 + (CA)n Simple_repeat Simple_repeat 1 754 0 3923 280 50 22 chr12 2742674 2744002 -141538487 + ERVL LTR ERVL 3074 4438 -1326 751 169 21 69 chr12 2744158 2744347 -141538142 + LTR41 LTR ERVL 1 180 -593 394 227 171 11 chr12 2744558 2744734 -141537755 + LTR50 LTR ERVL 590 793 -2 183 239 130 0 chr12 2744751 2744797 -141537692 + L2 LINE L2 2928 2979 -334 281 277 0 15 chr12 2745120 2745185 -141537304 - L2 LINE L2 -11 3302 3239 241 328 74 25 chr12 2745345 2745467 -141537022 + MER91A DNA MER1_type 1 128 -68 1802 256 67 53 chr12 2745839 2746057 -141536432 - MLT1E LTR MaLR 0 593 379 2026 116 7 7 chr12 2746057 2746350 -141536139 + AluSq SINE Alu 1 293 -20 1802 256 67 53 chr12 2746350 2746716 -141535773 - MLT1E LTR MaLR -214 379 1 183 263 35 18 chr12 2746949 2747006 -141535483 - L3b LINE CR1 -185 1398 1341 808 107 43 11 chr12 2748374 2748825 -141533664 + (CA)n Simple_repeat Simple_repeat 1 465 0 292 284 26 17 chr12 2748885 2749001 -141533488 + MER112 DNA MER1_type 1 117 -143 369 336 37 29 chr12 2749075 2749319 -141533170 - MER112 DNA MER1_type -7 253 8 213 311 0 40 chr12 2749420 2749494 -141532995 - MIR SINE MIR -81 181 111 240 262 0 0 chr12 2750183 2750242 -141532247 + MIR SINE MIR 94 153 -55 2289 83 3 0 chr12 2753460 2753760 -141528729 - AluSp SINE Alu -12 301 1 192 118 29 29 chr12 2754016 2754050 -141528439 + L3b LINE CR1 1293 1326 -257 292 198 430 0 chr12 2755020 2755141 -141527348 - MER5B DNA MER1_type -4 174 2 909 274 177 25 chr12 2755142 2755628 -141526861 + L3 LINE CR1 1010 1569 -8 652 235 88 14 chr12 2755643 2755860 -141526629 - L2 LINE L2 -3 3310 3078 1542 183 3 13 chr12 2756248 2756554 -141525935 - AluJo SINE Alu -9 303 1 23 33 0 0 chr12 2757381 2757411 -141525078 + GC_rich Low_complexity Low_complexity 1 30 0 1446 123 18 31 chr12 2764375 2764603 -141517886 + L1M4c LINE L1 19 243 -6141 3861 160 54 9 chr12 2764734 2765434 -141517055 + L1M4c LINE L1 249 980 -5404 * 45728 32 3 1 chr12 2765419 2771564 -141510925 + L1PA4 LINE L1 2 6155 0 10623 203 30 12 chr12 2771577 2775830 -141506659 + L1M4c LINE L1 947 5282 -1100 838 122 0 8 chr12 2775825 2775956 -141506533 + L1MB3 LINE L1 5818 5947 -224 * 501 145 226 8 chr12 2775963 2776087 -141506402 + L1MB3 LINE L1 6032 6182 -1 403 307 6 61 chr12 2777417 2777881 -141504608 + MER5A DNA MER1_type 8 161 -28 2173 109 0 0 chr12 2777459 2777761 -141504728 + AluSg SINE Alu 1 302 -8 200 300 87 47 chr12 2777761 2777903 -141504586 - MER5B DNA MER1_type -27 151 1 734 289 32 40 chr12 2778934 2779211 -141503278 + L2 LINE L2 2635 2909 -405 679 228 23 84 chr12 2779229 2779444 -141503045 + LTR41 LTR ERVL 1 202 -571 387 221 154 40 chr12 2779726 2779875 -141502614 + LTR41 LTR ERVL 605 770 -3 473 362 22 13 chr12 2780275 2780504 -141501985 + ERVL LTR ERVL 461 691 -5073 204 125 0 0 chr12 2780729 2780761 -141501728 + (TG)n Simple_repeat Simple_repeat 1 32 0 2014 146 50 20 chr12 2780776 2780826 -141501663 + THE1C LTR MaLR 8 55 -320 2293 83 0 3 chr12 2780826 2781128 -141501361 - AluSq SINE Alu -12 301 1 2014 146 50 20 chr12 2781128 2781434 -141501055 + THE1C LTR MaLR 55 375 0 235 250 0 29 chr12 2781434 2781502 -141500987 + (CATATA)n Simple_repeat Simple_repeat 4 69 0 5921 196 21 114 chr12 2781503 2782298 -141500191 + L1 LINE L1 2679 3547 -2599 2211 102 0 0 chr12 2782298 2782593 -141499896 + AluSg SINE Alu 3 297 -13 5921 196 21 114 chr12 2782593 2783087 -141499402 + L1 LINE L1 3547 4086 -2060 1063 153 0 0 chr12 2783087 2783257 -141499232 + AluSg/x SINE Alu 135 304 -8 5921 196 21 114 chr12 2783257 2783766 -141498723 + L1 LINE L1 4086 4462 -1684 4218 142 41 1 chr12 2783766 2784476 -141498013 + L1PA16 LINE L1 5412 6149 -17 5921 196 21 114 chr12 2784476 2784493 -141497996 + L1 LINE L1 4462 4479 -1667 3638 321 40 7 chr12 2784523 2785708 -141496781 + ERVL LTR ERVL 1758 2985 -2779 951 117 0 0 chr12 2785708 2785888 -141496601 + (CA)n Simple_repeat Simple_repeat 1 180 0 3638 321 40 7 chr12 2785888 2785906 -141496583 + ERVL LTR ERVL 2985 3001 -2763 924 135 0 0 chr12 2785906 2786354 -141496135 + (CA)n Simple_repeat Simple_repeat 1 448 0 377 88 0 15 chr12 2786367 2786435 -141496054 + (CA)n Simple_repeat Simple_repeat 2 68 0 335 266 175 28 chr12 2787051 2787194 -141495295 + MIR3 SINE MIR 38 201 -7 1352 142 145 14 chr12 2988020 2988309 -141294180 - L1 LINE L1 -2363 3783 3457 257 298 11 43 chr12 2988317 2988411 -141294078 + L2 LINE L2 3000 3090 -182 704 232 24 68 chr12 2988587 2988794 -141293695 - MER58A DNA MER1_type 0 224 27 1330 178 22 0 chr12 2988814 2989083 -141293406 + L1MA4 LINE L1 6016 6290 -10 23 0 0 0 chr12 2989083 2989106 -141293383 + AT_rich Low_complexity Low_complexity 1 23 0 259 256 79 43 chr12 2989244 2989408 -141293081 + L1ME4a LINE L1 5935 6104 -17 810 111 8 0 chr12 2989825 2989942 -141292547 + FLAM_C SINE Alu 1 118 -15 2342 83 3 0 chr12 2989979 2990268 -141292221 + AluY SINE Alu 1 290 -21 942 57 0 0 chr12 2990276 2990398 -141292091 + HERVK9 LTR ERVK 5634 5755 -161 1046 59 15 0 chr12 2990399 2990534 -141291955 - MER9 LTR ERVK -374 137 1 476 172 108 0 chr12 2990535 2990628 -141291861 - AluSg SINE Alu -206 104 2 1017 214 10 0 chr12 2990630 2990836 -141291653 + L1MB8 LINE L1 5354 5561 -617 986 68 7 103 chr12 2990836 2990982 -141291507 + AluSq/x SINE Alu 1 132 -180 1264 105 6 0 chr12 2991515 2991701 -141290788 + AluSp SINE Alu 121 307 0 2421 199 38 25 chr12 2991701 2992260 -141290229 + L1MB8 LINE L1 5554 6119 -59 1282 182 0 0 chr12 2992262 2992471 -141290018 + AluJo SINE Alu 7 215 -97 2048 120 18 0 chr12 2992713 2992997 -141289492 - AluSx SINE Alu -23 289 1 577 216 8 24 chr12 2993796 2993921 -141288568 + MER2 DNA MER2_type 1 123 -222 3261 92 6 32 chr12 2994137 2994639 -141287850 - LTR22B LTR ERVK -3 489 1 207 0 0 0 chr12 2995230 2995253 -141287236 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 2463 93 0 0 chr12 2995291 2995591 -141286898 + AluSp SINE Alu 1 300 -13 420 234 0 43 chr12 2995891 2995985 -141286504 - L1MC4 LINE L1 -1339 6703 6614 329 275 25 0 chr12 2995929 2996009 -141286480 + L1MC3 LINE L1 6571 6652 -1133 * 2169 115 7 0 chr12 2996085 2996373 -141286116 + AluSx SINE Alu 1 290 -22 2740 264 39 11 chr12 2996674 2996734 -141285755 + L1ME3 LINE L1 5173 5230 -932 243 0 0 0 chr12 2996734 2996761 -141285728 + (TG)n Simple_repeat Simple_repeat 2 28 0 2740 264 39 11 chr12 2996761 2996823 -141285666 + L1ME3 LINE L1 5230 5289 -873 2567 73 0 10 chr12 2996823 2997137 -141285352 - AluSx SINE Alu -1 311 1 2740 264 39 11 chr12 2997137 2997941 -141284548 + L1ME3 LINE L1 5289 6131 -31 245 227 82 41 chr12 2998108 2998205 -141284284 + L2 LINE L2 3198 3298 -15 928 128 0 0 chr12 2999066 2999191 -141283298 - FLAM_C SINE Alu -18 125 1 2021 134 14 7 chr12 2999744 3000036 -141282453 + AluJb SINE Alu 3 296 -16 332 292 129 67 chr12 3000102 3000149 -141282340 - MIR SINE MIR -29 233 190 1614 162 27 34 chr12 3000149 3000446 -141282043 + AluJb SINE Alu 2 296 -16 332 292 129 67 chr12 3000446 3000576 -141281913 - MIR SINE MIR -72 190 45 2588 71 0 0 chr12 3000750 3001061 -141281428 + AluY SINE Alu 1 311 0 272 329 87 14 chr12 3001986 3002193 -141280296 - MIR SINE MIR -35 227 6 1333 93 6 0 chr12 3002759 3002931 -141279558 + AluSq SINE Alu 1 173 -140 502 94 0 0 chr12 3002931 3003016 -141279473 + AluJ/FRAM SINE Alu 224 308 -4 192 276 92 13 chr12 3003054 3003130 -141279359 - L2 LINE L2 -4 3309 3228 186 43 0 0 chr12 3003885 3003908 -141278581 + (A)n Simple_repeat Simple_repeat 1 23 0 31 58 0 0 chr12 3004372 3004424 -141278065 + GC_rich Low_complexity Low_complexity 1 52 0 30 93 0 0 chr12 3004631 3004717 -141277772 + GC_rich Low_complexity Low_complexity 1 86 0 28 61 0 0 chr12 3004954 3005003 -141277486 + GC_rich Low_complexity Low_complexity 1 49 0 205 267 144 0 chr12 3005881 3005971 -141276518 - MIR SINE MIR -66 196 94 355 297 40 20 chr12 3007922 3008070 -141274419 + MIR3 SINE MIR 37 187 -21 180 297 55 55 chr12 3008583 3008711 -141273778 - L2 LINE L2 0 3272 3145 700 228 6 6 chr12 3010701 3010859 -141271630 + FRAM SINE Alu 1 158 -18 386 319 32 27 chr12 3011029 3011214 -141271275 - L1MC4a LINE L1 -1871 5937 5752 2319 100 13 0 chr12 3011227 3011527 -141270962 - AluSq SINE Alu -9 304 1 367 191 142 53 chr12 3011549 3011758 -141270731 - Charlie5 DNA MER1_type -27 2585 3 2018 152 0 7 chr12 3011819 3012121 -141270368 - AluJb SINE Alu -12 300 1 437 216 0 39 chr12 3013916 3014018 -141268471 + AluJb SINE Alu 191 288 -24 334 286 71 26 chr12 3014136 3014290 -141268199 - MIR SINE MIR 0 262 102 244 185 283 22 chr12 3014335 3014427 -141268062 + MIR3 SINE MIR 90 205 -3 215 295 186 38 chr12 3014791 3015028 -141267461 + L2 LINE L2 2546 2817 -497 945 162 6 39 chr12 3015519 3015533 -141266956 - AluJb SINE Alu -3 309 296 2250 123 10 0 chr12 3015533 3015835 -141266654 - AluSx SINE Alu -7 305 1 945 162 6 39 chr12 3015835 3015849 -141266640 - AluJb SINE Alu -16 296 283 213 65 0 0 chr12 3015849 3015880 -141266609 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 945 162 6 39 chr12 3015880 3016029 -141266460 - AluJb SINE Alu -29 283 137 2243 124 0 0 chr12 3016029 3016328 -141266161 - AluSq SINE Alu -14 299 1 310 183 157 78 chr12 3016516 3016631 -141265858 - L1MB5 LINE L1 -9 6165 6042 2416 83 0 32 chr12 3017137 3017451 -141265038 + AluY SINE Alu 1 304 -7 1996 96 37 0 chr12 3017921 3018191 -141264298 + AluSq SINE Alu 21 300 -13 2456 88 3 0 chr12 3018191 3018496 -141263993 + AluY SINE Alu 1 306 -5 2364 94 7 10 chr12 3018749 3019058 -141263431 + AluSg SINE Alu 1 308 -2 1904 178 7 0 chr12 3019075 3019378 -141263111 - AluSx SINE Alu -7 305 1 832 153 108 0 chr12 3019821 3019978 -141262511 + AluSg/x SINE Alu 136 309 -3 2466 65 0 46 chr12 3019980 3020121 -141262368 + AluSc SINE Alu 1 147 -162 2447 58 0 3 chr12 3020121 3020414 -141262075 + AluY SINE Alu 1 292 -19 207 0 0 0 chr12 3020414 3020437 -141262052 + (TTAAA)n Simple_repeat Simple_repeat 3 25 0 2466 65 0 46 chr12 3020437 3020618 -141261871 + AluSc SINE Alu 145 309 0 530 194 114 55 chr12 3021186 3021423 -141261066 + MER112 DNA MER1_type 3 253 -7 1478 108 10 0 chr12 3022135 3022339 -141260150 - AluSg/x SINE Alu -15 295 90 277 122 0 0 chr12 3022339 3022380 -141260109 - Alu SINE Alu -261 41 1 290 230 0 27 chr12 3022391 3022465 -141260024 + MIR SINE MIR 184 255 -7 281 348 51 8 chr12 3022491 3022609 -141259880 - L2 LINE L2 0 3272 3150 1827 180 0 3 chr12 3023038 3023338 -141259151 - AluJo SINE Alu -13 299 1 286 269 55 71 chr12 3023500 3023641 -141258848 + L2 LINE L2 3130 3269 -44 2119 157 0 6 chr12 3023641 3023954 -141258535 + AluJb SINE Alu 1 311 -1 286 269 55 71 chr12 3023954 3023994 -141258495 + L2 LINE L2 3269 3308 -5 1174 102 0 30 chr12 3024070 3024236 -141258253 - AluSq SINE Alu -16 297 137 1788 170 0 50 chr12 3024957 3025125 -141257364 - AluJo SINE Alu -11 301 126 2436 87 3 0 chr12 3025125 3025424 -141257065 - AluSx SINE Alu -12 300 1 2525 81 0 0 chr12 3025424 3025722 -141256767 - AluY SINE Alu -13 298 1 2049 151 0 22 chr12 3025722 3026039 -141256450 - AluJb SINE Alu -2 310 1 1788 170 0 50 chr12 3026039 3026185 -141256304 - AluJo SINE Alu -183 129 1 323 339 9 9 chr12 3027465 3027580 -141254909 - L2 LINE L2 0 3313 3199 746 214 37 21 chr12 3027590 3027777 -141254712 + AluJo SINE Alu 118 307 -5 2048 138 24 0 chr12 3027829 3028125 -141254364 + AluSq SINE Alu 1 303 -10 2002 121 13 49 chr12 3028129 3028276 -141254213 + AluSx SINE Alu 1 133 -179 2400 77 0 13 chr12 3028276 3028575 -141253914 + AluY SINE Alu 1 295 -16 2002 121 13 49 chr12 3028575 3028733 -141253756 + AluSx SINE Alu 133 295 -17 267 279 54 0 chr12 3028737 3028848 -141253641 - L2 LINE L2 -175 3138 3022 203 103 26 0 chr12 3029711 3029750 -141252739 + C-rich Low_complexity Low_complexity 2 41 0 1676 191 30 10 chr12 3031011 3031315 -141251174 - AluJo SINE Alu -2 310 1 469 245 129 0 chr12 3031622 3031761 -141250728 + MIR SINE MIR 36 192 -70 692 182 186 23 chr12 3034070 3034290 -141248199 - MER112 DNA MER1_type 0 256 1 2011 163 0 3 chr12 3034857 3035157 -141247332 - AluSx SINE Alu -13 299 1 424 136 0 0 chr12 3037331 3037397 -141245092 - L1MB7 LINE L1 -98 6086 6021 2430 76 3 10 chr12 3037651 3037952 -141244537 + AluSp SINE Alu 1 299 -14 829 146 51 22 chr12 3038018 3038155 -141244334 + FLAM_C SINE Alu 1 141 -2 1646 167 41 31 chr12 3038583 3038876 -141243613 + AluJb SINE Alu 3 298 -14 2232 105 3 0 chr12 3038893 3039178 -141243311 + AluSx SINE Alu 5 290 -22 230 262 71 56 chr12 3039251 3039377 -141243112 - L2 LINE L2 -213 3059 2932 2218 147 0 0 chr12 3040395 3040702 -141241787 + AluSx SINE Alu 1 307 -5 204 192 0 58 chr12 3040822 3040856 -141241633 + CT-rich Low_complexity Low_complexity 4 36 -16 638 241 0 0 chr12 3040856 3040989 -141241500 - FLAM_A SINE Alu 0 133 1 204 192 0 58 chr12 3040989 3041006 -141241483 + CT-rich Low_complexity Low_complexity 36 52 0 401 250 264 0 chr12 3041149 3041289 -141241200 + MER5A DNA MER1_type 11 187 -2 256 293 151 82 chr12 3041644 3041876 -141240613 + L2 LINE L2 3023 3270 -2 804 221 103 0 chr12 3042826 3043039 -141239450 - MIR SINE MIR 0 262 28 294 29 0 0 chr12 3044250 3044285 -141238204 + (TG)n Simple_repeat Simple_repeat 1 35 0 186 103 0 0 chr12 3044285 3044314 -141238175 + (GA)n Simple_repeat Simple_repeat 2 30 0 821 265 108 42 chr12 3044971 3045379 -141237110 - L1ME3A LINE L1 -260 5910 5476 2137 182 44 22 chr12 3045675 3046132 -141236357 + MLT1C LTR MaLR 1 467 0 2272 93 0 52 chr12 3046149 3046289 -141236200 + AluSq SINE Alu 7 153 -160 2595 34 0 3 chr12 3046289 3046581 -141235908 + AluY SINE Alu 1 291 -20 2272 93 0 52 chr12 3046581 3046764 -141235725 + AluSq SINE Alu 153 313 0 1205 144 0 0 chr12 3046768 3046935 -141235554 + FRAM SINE Alu 1 159 -17 2097 141 3 0 chr12 3048103 3048393 -141234096 + AluSx SINE Alu 1 291 -21 737 212 71 16 chr12 3048657 3048841 -141233648 - L2 LINE L2 -1 3312 3119 1959 169 19 0 chr12 3048841 3049213 -141233276 + L1PA16 LINE L1 5787 6165 -1 235 191 21 149 chr12 3049214 3049260 -141233229 + L1M4 LINE L1 4505 4555 -1591 2270 92 0 23 chr12 3049260 3049563 -141232926 + AluSx SINE Alu 1 296 -16 235 191 21 149 chr12 3049563 3049614 -141232875 + L1M4 LINE L1 4555 4581 -1565 2418 60 0 0 chr12 3049614 3049896 -141232593 + AluY SINE Alu 17 298 -13 235 191 21 149 chr12 3049896 3049938 -141232551 + L1M4 LINE L1 4581 4627 -1519 820 160 33 149 chr12 3050637 3050813 -141231676 + MER33 DNA MER1_type 5 200 -2385 2346 91 0 3 chr12 3050813 3051110 -141231379 - AluSc SINE Alu -13 296 1 820 160 33 149 chr12 3051110 3051207 -141231282 + MER33 DNA MER1_type 200 307 -2278 2394 94 0 7 chr12 3051207 3051514 -141230975 - AluSc SINE Alu -4 305 1 820 160 33 149 chr12 3051514 3051553 -141230936 + MER33 DNA MER1_type 307 274 -2311 1802 158 34 0 chr12 3051553 3051844 -141230645 + AluJb SINE Alu 1 301 -11 820 160 33 149 chr12 3051844 3051891 -141230598 + MER33 DNA MER1_type 273 324 0 367 339 103 21 chr12 3051895 3052128 -141230361 - L3b LINE CR1 -140 1443 1192 233 298 18 0 chr12 3052495 3052552 -141229937 - MIR SINE MIR -109 153 96 2316 106 0 0 chr12 3052624 3052917 -141229572 + AluSx SINE Alu 1 293 -19 423 260 63 8 chr12 3052918 3053045 -141229444 + MIR SINE MIR 59 192 -70 1861 139 27 14 chr12 3053071 3053365 -141229124 + AluJb SINE Alu 1 298 -14 2032 154 0 0 chr12 3053365 3053657 -141228832 + AluSx SINE Alu 1 292 -20 816 154 0 0 chr12 3054962 3055092 -141227397 - FLAM_A SINE Alu -1 132 3 350 281 50 0 chr12 3055598 3055719 -141226770 + MIR3 SINE MIR 78 204 -4 923 208 60 1 chr12 3055978 3056277 -141226212 - L1MB7 LINE L1 -2 6169 5833 1711 153 5 83 chr12 3056291 3056470 -141226019 - L1MB4 LINE L1 -2 6178 5986 2279 76 10 30 chr12 3056470 3056774 -141225715 + AluY SINE Alu 1 298 -13 1711 153 5 83 chr12 3056774 3057013 -141225476 - L1MB4 LINE L1 -194 5986 5793 359 272 53 27 chr12 3057054 3057260 -141225229 - MIR SINE MIR -12 250 33 396 40 0 0 chr12 3057956 3058006 -141224483 + (CA)n Simple_repeat Simple_repeat 2 51 0 265 250 68 119 chr12 3059148 3059287 -141223202 - MER5B DNA MER1_type 0 178 48 2359 83 7 13 chr12 3059287 3059589 -141222900 + AluSg SINE Alu 1 300 -10 265 250 68 119 chr12 3059589 3059625 -141222864 - MER5B DNA MER1_type -130 48 12 2165 107 7 4 chr12 3059747 3060065 -141222424 - AluSx SINE Alu 0 319 1 216 0 0 0 chr12 3060072 3060096 -141222393 + (T)n Simple_repeat Simple_repeat 1 24 0 1146 108 25 0 chr12 3060111 3060268 -141222221 + AluSp SINE Alu 134 294 -19 1130 126 133 96 chr12 3060283 3060331 -141222158 - MER7C DNA MER2_type -2723 305 260 218 81 27 0 chr12 3060331 3060368 -141222121 + (TGAG)n Simple_repeat Simple_repeat 1 38 0 1130 126 133 96 chr12 3060368 3060437 -141222052 - MER7C DNA MER2_type -2768 260 195 2096 127 0 3 chr12 3060437 3060736 -141221753 - AluSx SINE Alu -14 298 1 195 48 48 24 chr12 3060742 3060784 -141221705 + (TTTTA)n Simple_repeat Simple_repeat 2 44 0 2193 114 0 0 chr12 3060791 3061072 -141221417 - AluSx SINE Alu -31 281 1 1130 126 133 96 chr12 3061072 3061231 -141221258 - MER7C DNA MER2_type -2842 186 2 249 298 12 0 chr12 3061298 3061382 -141221107 - L2 LINE L2 -51 3262 3178 321 192 70 109 chr12 3061450 3061463 -141221026 + MIR SINE MIR 80 92 -170 1765 169 14 7 chr12 3061463 3061758 -141220731 - AluJo SINE Alu -15 297 1 321 192 70 109 chr12 3061758 3061816 -141220673 + MIR SINE MIR 92 151 -111 2215 96 23 7 chr12 3061816 3062119 -141220370 + AluSx SINE Alu 1 308 -4 321 192 70 109 chr12 3062119 3062202 -141220287 + MIR SINE MIR 151 229 -33 2466 74 10 0 chr12 3062369 3062666 -141219823 - AluSq SINE Alu -13 300 1 306 67 0 0 chr12 3062671 3062716 -141219773 + (TTTTTG)n Simple_repeat Simple_repeat 4 48 0 2227 99 3 0 chr12 3063124 3063418 -141219071 - AluSp SINE Alu -18 295 1 223 288 85 25 chr12 3063433 3063551 -141218938 - MIR SINE MIR -44 218 94 205 258 118 0 chr12 3063703 3063796 -141218693 + L2 LINE L2 3160 3263 -9 451 288 162 21 chr12 3065177 3065368 -141217121 - MIR SINE MIR -43 219 2 2206 103 10 3 chr12 3065464 3065756 -141216733 - AluSq SINE Alu -19 294 1 489 348 14 43 chr12 3068963 3069042 -141213447 + L1ME4a LINE L1 4932 5012 -1134 431 134 134 0 chr12 3069042 3069124 -141213365 + HY4 scRNA scRNA 1 93 0 489 348 14 43 chr12 3069124 3069326 -141213163 + L1ME4a LINE L1 5012 5205 -941 1364 183 77 18 chr12 3069332 3069605 -141212884 + AluJb SINE Alu 19 307 -5 2292 84 31 0 chr12 3069685 3069972 -141212517 + AluSx SINE Alu 1 296 -16 2430 81 0 3 chr12 3069980 3070276 -141212213 + AluSg SINE Alu 1 295 -15 718 318 65 31 chr12 3070297 3070425 -141212064 + L1ME4a LINE L1 5305 5427 -735 701 72 0 0 chr12 3070425 3070522 -141211967 + L1PB1 LINE L1 6054 6150 -1 718 318 65 31 chr12 3070522 3070992 -141211497 + L1ME4a LINE L1 5427 5887 -275 2440 93 0 0 chr12 3070992 3071292 -141211197 + AluSg SINE Alu 1 300 -10 718 318 65 31 chr12 3071292 3071329 -141211160 + L1ME4a LINE L1 5887 5921 -241 23 39 0 39 chr12 3071611 3071635 -141210854 + AT_rich Low_complexity Low_complexity 1 24 -26 1679 187 0 37 chr12 3071635 3071935 -141210554 - AluJo SINE Alu -23 289 1 23 39 0 39 chr12 3071935 3071962 -141210527 + AT_rich Low_complexity Low_complexity 24 50 0 902 171 51 37 chr12 3072154 3072370 -141210119 + MER20 DNA MER1_type 1 219 0 1829 157 10 23 chr12 3072483 3072788 -141209701 - AluJo SINE Alu -11 301 1 2290 93 20 3 chr12 3072798 3073098 -141209391 - AluSg SINE Alu -5 305 1 2537 88 0 0 chr12 3074737 3075045 -141207444 - AluSp SINE Alu -4 309 2 363 294 52 15 chr12 3075071 3075207 -141207282 - MER5A DNA MER1_type -6 183 43 * 511 282 20 13 chr12 3075089 3075238 -141207251 + MER5A DNA MER1_type 40 189 0 2179 137 0 0 chr12 3075964 3076264 -141206225 + AluSx SINE Alu 1 300 -12 1299 169 118 32 chr12 3076276 3076555 -141205934 + AluJb SINE Alu 1 303 -9 1495 36 0 0 chr12 3076604 3076769 -141205720 + AluY SINE Alu 131 295 -16 2430 84 3 16 chr12 3076787 3077097 -141205392 + AluSx SINE Alu 1 306 -6 243 246 53 0 chr12 3077982 3078039 -141204450 - MIR3 SINE MIR -3 205 146 184 320 0 0 chr12 3078196 3078246 -141204243 + MIR SINE MIR 37 86 -122 1732 154 3 63 chr12 3078364 3078530 -141203959 - AluJb SINE Alu -13 299 159 2370 94 3 7 chr12 3078530 3078829 -141203660 - AluSq SINE Alu -14 299 2 1732 154 3 63 chr12 3078829 3078980 -141203509 - AluJb SINE Alu -153 159 1 332 225 67 34 chr12 3078989 3079078 -141203411 - L1ME3 LINE L1 -1 6161 6070 1992 138 52 0 chr12 3079079 3079369 -141203120 - AluSp SINE Alu -8 305 1 1874 120 3 46 chr12 3079393 3079476 -141203013 + L1PA15 LINE L1 5854 5939 -226 2366 88 0 0 chr12 3079476 3079770 -141202719 + AluSc SINE Alu 1 294 -15 2371 92 3 0 chr12 3079772 3080076 -141202413 + AluSg SINE Alu 1 305 -5 1874 120 3 46 chr12 3080076 3080315 -141202174 + L1PA15 LINE L1 5940 6165 0 2021 124 7 20 chr12 3080459 3080757 -141201732 + AluJb SINE Alu 1 294 -18 188 320 98 52 chr12 3080911 3081064 -141201425 - L2 LINE L2 -15 3257 3098 2264 106 30 0 chr12 3081421 3081722 -141200767 + AluSx SINE Alu 1 310 -2 1253 182 0 10 chr12 3081948 3082157 -141200332 + AluJo SINE Alu 86 292 -20 2383 112 0 3 chr12 3082209 3082521 -141199968 + AluSx SINE Alu 1 311 -1 667 167 0 0 chr12 3082525 3082639 -141199850 + FLAM_C SINE Alu 2 115 -18 2243 101 13 7 chr12 3082663 3082971 -141199518 - AluSx SINE Alu -2 310 1 2467 97 0 0 chr12 3084076 3084386 -141198103 - AluSx SINE Alu -2 310 1 360 174 14 0 chr12 3084535 3084604 -141197885 - MER91C DNA MER1_type -8 132 63 1828 91 20 20 chr12 3084845 3085097 -141197392 - AluSq SINE Alu -4 309 58 1966 81 18 15 chr12 3135097 3135369 -141147120 - AluSq SINE Alu -40 273 1 22 88 0 0 chr12 3136309 3136366 -141146123 + GC_rich Low_complexity Low_complexity 1 57 0 358 243 72 79 chr12 3137046 3137198 -141145291 - L2 LINE L2 0 3272 3122 1806 133 31 0 chr12 3137207 3137493 -141144996 + AluJb SINE Alu 1 295 -17 329 296 124 94 chr12 3137646 3138244 -141144245 - L2 LINE L2 -350 2964 2349 1725 187 0 13 chr12 3138297 3138612 -141143877 - AluJb SINE Alu -1 311 1 1881 150 0 7 chr12 3138636 3138942 -141143547 - AluJb SINE Alu -8 304 1 255 339 94 12 chr12 3138942 3139113 -141143376 - L2 LINE L2 -964 2350 2166 300 276 140 83 chr12 3139114 3139342 -141143147 - L2 LINE L2 -1737 1577 1363 1526 163 71 27 chr12 3139342 3139637 -141142852 + AluJo SINE Alu 1 308 -4 2125 95 14 3 chr12 3139643 3139939 -141142550 + AluSx SINE Alu 1 299 -13 1741 166 7 17 chr12 3139946 3140247 -141142242 - AluJo SINE Alu -14 298 1 300 276 140 83 chr12 3140247 3140361 -141142128 - L2 LINE L2 -1960 1354 1213 2078 120 0 0 chr12 3140410 3140711 -141141778 - AluSx SINE Alu -11 301 1 651 228 37 15 chr12 3140722 3140858 -141141631 + L2 LINE L2 3175 3313 0 2211 105 7 0 chr12 3140933 3141237 -141141252 + AluSg SINE Alu 1 306 -4 210 243 54 40 chr12 3141387 3141461 -141141028 + L2 LINE L2 1820 1894 -1420 806 134 0 0 chr12 3141468 3141587 -141140902 + FLAM_C SINE Alu 1 119 -24 342 0 0 0 chr12 3141587 3141625 -141140864 + (TAAA)n Simple_repeat Simple_repeat 3 40 0 1776 155 0 13 chr12 3141725 3142035 -141140454 + AluSx SINE Alu 1 306 -6 203 283 0 0 chr12 3142062 3142108 -141140381 - L2 LINE L2 -239 3074 3029 1525 177 3 25 chr12 3142111 3142394 -141140095 + AluJo SINE Alu 25 301 -11 1715 172 14 0 chr12 3142409 3142705 -141139784 + AluJb SINE Alu 5 304 -8 324 0 0 0 chr12 3142785 3142821 -141139668 + (TA)n Simple_repeat Simple_repeat 2 37 0 2456 50 7 0 chr12 3142821 3143124 -141139365 - AluSp SINE Alu -8 305 1 462 272 20 20 chr12 3143130 3143277 -141139212 + L1MC5 LINE L1 7763 7909 -52 189 74 0 0 chr12 3143359 3143386 -141139103 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 1989 93 3 34 chr12 3143388 3143541 -141138948 - AluSx SINE Alu -30 282 126 180 0 0 0 chr12 3143541 3143561 -141138928 + (TTTG)n Simple_repeat Simple_repeat 1 20 0 1829 131 25 0 chr12 3143561 3143835 -141138654 - AluSx SINE Alu -31 281 1 1989 93 3 34 chr12 3143835 3143971 -141138518 - AluSx SINE Alu -184 128 1 344 308 156 113 chr12 3144017 3144433 -141138056 + L2 LINE L2 2836 3269 -3 2558 48 0 3 chr12 3144871 3145183 -141137306 - AluY SINE Alu 0 311 1 2040 127 3 19 chr12 3145677 3145992 -141136497 + AluJb SINE Alu 1 310 -2 207 314 0 0 chr12 3146175 3146226 -141136263 - MIR SINE MIR 0 262 212 411 194 86 11 chr12 3146258 3146351 -141136138 - L2 LINE L2 -18 3254 3155 1828 157 3 7 chr12 3146369 3146504 -141135985 + AluSx SINE Alu 1 135 -177 2013 134 3 0 chr12 3146504 3146809 -141135680 + AluSq SINE Alu 1 306 -7 1828 157 3 7 chr12 3146809 3146972 -141135517 + AluSx SINE Alu 135 298 -14 290 241 17 0 chr12 3147012 3147070 -141135419 - MIR SINE MIR -60 148 90 1707 129 4 7 chr12 3147837 3148108 -141134381 - AluSq SINE Alu -13 300 31 193 224 233 17 chr12 3148865 3148981 -141133508 - MIR SINE MIR -88 174 34 1734 124 7 7 chr12 3149271 3149546 -141132943 + AluSx SINE Alu 14 288 -24 1221 165 30 66 chr12 3151079 3151203 -141131286 + AluJo SINE Alu 1 128 -184 180 0 0 0 chr12 3151203 3151223 -141131266 + (TAAAA)n Simple_repeat Simple_repeat 2 21 0 1221 165 30 66 chr12 3151223 3151401 -141131088 + AluJo SINE Alu 128 292 -20 2293 83 0 0 chr12 3151817 3152118 -141130371 - AluSc SINE Alu -8 301 1 1546 163 29 10 chr12 3152165 3152471 -141130018 - AluJb SINE Alu 0 312 1 2014 92 28 0 chr12 3152636 3152919 -141129570 - AluSp SINE Alu -12 301 11 901 126 7 0 chr12 3153117 3153252 -141129237 - AluJo SINE Alu -176 136 1 1807 112 3 70 chr12 3153540 3153847 -141128642 + AluSx SINE Alu 1 287 -20 309 51 0 0 chr12 3153847 3153886 -141128603 + (CA)n Simple_repeat Simple_repeat 2 40 0 1888 139 0 4 chr12 3153922 3154228 -141128261 + AluSg SINE Alu 1 305 0 1736 150 64 27 chr12 3155001 3155252 -141127237 - MER7A DNA MER2_type -2692 346 81 2167 105 3 3 chr12 3155252 3155548 -141126941 - AluSx SINE Alu -16 296 1 1736 150 64 27 chr12 3155548 3155626 -141126863 - MER7A DNA MER2_type -2957 81 7 209 146 91 73 chr12 3156002 3156057 -141126432 - MIR SINE MIR -85 177 122 187 278 62 104 chr12 3156104 3156248 -141126241 + MIR SINE MIR 112 249 -13 1992 108 17 3 chr12 3156330 3156618 -141125871 - AluSx SINE Alu -20 292 1 682 149 0 50 chr12 3156793 3156914 -141125575 + FLAM_C SINE Alu 3 117 -16 651 195 47 8 chr12 3156936 3157064 -141125425 - FLAM_C SINE Alu 0 133 1 244 28 0 0 chr12 3157064 3157100 -141125389 + Alu SINE Alu 285 320 0 2106 106 3 3 chr12 3157105 3157407 -141125082 + AluSq SINE Alu 1 302 -11 370 281 26 26 chr12 3157426 3157540 -141124949 - MIR SINE MIR -47 215 102 718 181 0 15 chr12 3157639 3157772 -141124717 - FLAM_A SINE Alu -11 131 1 780 198 47 41 chr12 3157779 3157951 -141124538 - MER58B DNA MER1_type -14 327 155 1622 156 11 0 chr12 3158010 3158285 -141124204 - AluJo SINE Alu -32 280 3 735 144 40 87 chr12 3158286 3158372 -141124117 - MER58B DNA MER1_type -176 165 89 2228 86 3 0 chr12 3158372 3158673 -141123816 + AluSp SINE Alu 1 302 -11 735 144 40 87 chr12 3158673 3158759 -141123730 - MER58B DNA MER1_type -252 89 1 2461 71 0 0 chr12 3158920 3159231 -141123258 + AluY SINE Alu 1 311 0 1848 121 10 33 chr12 3159244 3159549 -141122940 + AluSx SINE Alu 4 301 -11 1396 161 74 18 chr12 3160030 3160315 -141122174 - AluJb SINE Alu -11 301 1 446 209 0 0 chr12 3160318 3160409 -141122080 - L1ME LINE L1 -727 5437 5347 948 133 42 6 chr12 3160435 3160600 -141121889 - AluJb SINE Alu -22 290 120 180 0 0 0 chr12 3160601 3160621 -141121868 + (TTTC)n Simple_repeat Simple_repeat 1 20 0 263 120 0 40 chr12 3160621 3160671 -141121818 - FLAM_A SINE Alu 0 133 86 1934 126 0 3 chr12 3160682 3160991 -141121498 - AluSx SINE Alu 0 308 1 742 210 70 0 chr12 3160991 3161177 -141121312 - L1ME LINE L1 -821 5325 5127 2033 132 0 0 chr12 3162173 3162468 -141120021 - AluSx SINE Alu -15 297 3 869 210 46 67 chr12 3162570 3162589 -141119900 - L1MD3 LINE L1 0 8042 8024 2306 87 3 0 chr12 3162589 3162900 -141119589 + AluSp SINE Alu 1 312 -1 869 210 46 67 chr12 3162900 3163080 -141119409 - L1MD3 LINE L1 -18 8024 7832 2181 93 0 13 chr12 3163080 3163390 -141119099 - AluSg SINE Alu -4 306 1 869 210 46 67 chr12 3163390 3163527 -141118962 - L1MD3 LINE L1 -210 7832 7694 801 191 0 0 chr12 3163663 3163810 -141118679 - FRAM SINE Alu -29 147 1 1818 96 75 21 chr12 3164126 3164406 -141118083 + AluSx SINE Alu 1 295 -17 2278 88 0 0 chr12 3164496 3164792 -141117697 - AluSc SINE Alu -13 296 1 24 0 0 0 chr12 3164836 3164860 -141117629 + AT_rich Low_complexity Low_complexity 1 24 0 522 158 0 0 chr12 3165259 3165341 -141117148 + AluSg/x SINE Alu 209 290 -19 1983 113 3 3 chr12 3165341 3165633 -141116856 - AluSg SINE Alu -14 296 5 2041 112 3 13 chr12 3165633 3165937 -141116552 - AluSx SINE Alu -11 301 1 25 0 0 0 chr12 3165937 3165962 -141116527 + AT_rich Low_complexity Low_complexity 1 25 0 1942 95 0 18 chr12 3165964 3166263 -141116226 + AluSq SINE Alu 23 313 0 2076 114 0 10 chr12 3166364 3166499 -141115990 + AluSx SINE Alu 1 136 -176 1897 117 10 26 chr12 3166499 3166807 -141115682 + AluSc SINE Alu 1 303 -6 2076 114 0 10 chr12 3166807 3166970 -141115519 + AluSx SINE Alu 136 296 -16 1662 128 40 10 chr12 3167734 3168030 -141114459 - AluSg SINE Alu -5 305 1 21 0 0 0 chr12 3168318 3168339 -141114150 + AT_rich Low_complexity Low_complexity 1 21 0 387 349 27 7 chr12 3168416 3168562 -141113927 + MIR SINE MIR 109 257 -5 1920 71 68 11 chr12 3169319 3169599 -141112890 + AluY SINE Alu 1 296 -15 339 359 46 8 chr12 3169649 3169780 -141112709 + L2 LINE L2 3136 3271 -1 2215 68 0 42 chr12 3170665 3170973 -141111516 - AluY SINE Alu -16 295 1 387 0 0 0 chr12 3170973 3171016 -141111473 + (T)n Simple_repeat Simple_repeat 1 43 0 21 0 0 0 chr12 3171083 3171104 -141111385 + AT_rich Low_complexity Low_complexity 1 21 0 629 206 0 53 chr12 3171155 3171286 -141111203 + FLAM_A SINE Alu 5 128 -5 516 290 41 26 chr12 3171415 3171570 -141110919 + MIR3 SINE MIR 2 162 -46 697 62 21 0 chr12 3172275 3172371 -141110118 - AluSc SINE Alu -4 305 208 875 94 16 8 chr12 3172380 3172508 -141109981 - L1M4 LINE L1 -656 5522 5394 303 28 0 0 chr12 3172510 3172546 -141109943 + (TG)n Simple_repeat Simple_repeat 1 36 0 1679 166 0 50 chr12 3172552 3172872 -141109617 - AluJo SINE Alu -8 304 1 362 230 74 67 chr12 3172872 3172907 -141109582 - L1M4 LINE L1 -1109 5037 5004 2243 103 0 0 chr12 3172907 3173217 -141109272 - AluSg SINE Alu 0 310 1 362 230 74 67 chr12 3173217 3173236 -141109253 - L1M4 LINE L1 -1142 5004 4987 1417 94 18 101 chr12 3173236 3173431 -141109058 - L1MA4 LINE L1 -11 6289 6122 2286 93 3 0 chr12 3173431 3173732 -141108757 - AluSp SINE Alu -11 302 1 1417 94 18 101 chr12 3173732 3173812 -141108677 - L1MA4 LINE L1 -178 6122 6037 362 230 74 67 chr12 3173812 3173891 -141108598 - L1M4 LINE L1 -1159 4987 4902 1923 147 0 0 chr12 3173947 3174240 -141108249 - AluSx SINE Alu -18 294 2 1927 127 0 7 chr12 3174291 3174598 -141107891 - AluSx SINE Alu 0 305 1 2212 87 0 22 chr12 3174841 3175152 -141107337 - AluSc SINE Alu -5 304 1 1842 112 47 4 chr12 3175327 3175605 -141106884 - AluSx SINE Alu -17 295 6 1701 100 0 0 chr12 3176563 3176793 -141105696 + AluSg/x SINE Alu 66 295 -17 2345 71 0 0 chr12 3176904 3177200 -141105289 + AluY SINE Alu 1 296 -15 1271 112 0 21 chr12 3177217 3177405 -141105084 + AluSq SINE Alu 106 289 -24 2176 83 13 0 chr12 3177420 3177720 -141104769 - AluSx SINE Alu -8 304 1 2152 99 3 0 chr12 3177856 3178148 -141104341 - AluSp SINE Alu -20 293 1 2093 99 3 23 chr12 3178198 3178500 -141103989 - AluSx SINE Alu -16 296 1 1807 157 7 0 chr12 3179536 3179835 -141102654 + AluJb SINE Alu 1 301 -11 312 169 143 13 chr12 3179911 3179988 -141102501 + MIR SINE MIR 100 186 -76 2175 80 3 10 chr12 3180448 3180748 -141101741 - AluSq SINE Alu -14 299 2 1755 178 3 0 chr12 3181110 3181403 -141101086 + AluJo SINE Alu 1 294 -18 2342 53 0 20 chr12 3182164 3182467 -141100022 - AluY SINE Alu -14 297 1 198 246 66 33 chr12 3182471 3182532 -141099957 - MIR SINE MIR -86 176 114 192 291 0 36 chr12 3182534 3182589 -141099900 - L2 LINE L2 -12 3301 3249 1952 111 36 13 chr12 3182681 3182987 -141099502 + AluSq SINE Alu 1 313 0 1691 162 0 30 chr12 3183000 3183303 -141099186 + AluJb SINE Alu 3 296 -16 417 317 89 85 chr12 3183319 3183704 -141098785 - L2 LINE L2 -15 3257 2875 1561 182 10 19 chr12 3183704 3184012 -141098477 + AluJo SINE Alu 1 305 -7 894 186 6 12 chr12 3184019 3184180 -141098309 + FRAM SINE Alu 4 163 -3 417 317 89 85 chr12 3184180 3184204 -141098285 - L2 LINE L2 -402 2870 2848 2165 63 31 14 chr12 3184204 3184491 -141097998 + AluY SINE Alu 1 292 -19 417 317 89 85 chr12 3184491 3184629 -141097860 - L2 LINE L2 -424 2848 2619 180 259 241 0 chr12 3184829 3184887 -141097602 - MIR SINE MIR -8 254 183 1639 132 66 11 chr12 3185527 3185799 -141096690 + AluJb SINE Alu 2 288 -24 2294 173 56 18 chr12 3185858 3185928 -141096561 - L1MB8 LINE L1 0 6178 6112 1705 150 3 19 chr12 3185928 3186235 -141096254 + AluSq SINE Alu 1 302 -11 2294 173 56 18 chr12 3186235 3186667 -141095822 - L1MB8 LINE L1 -66 6112 5657 2020 108 42 0 chr12 3186675 3186961 -141095528 - AluSg SINE Alu -12 298 1 2246 103 3 0 chr12 3187557 3187869 -141094620 + AluSp SINE Alu 1 313 0 237 91 0 68 chr12 3187920 3187964 -141094525 - L1MB4 LINE L1 0 6180 6140 2095 103 0 7 chr12 3187969 3188259 -141094230 + AluSx SINE Alu 1 288 -24 281 140 53 18 chr12 3188274 3188331 -141094158 + U7 snRNA snRNA 2 60 -3 1084 181 112 84 chr12 3188363 3188389 -141094100 - AluJo SINE Alu -7 295 271 2040 36 4 0 chr12 3188389 3188636 -141093853 + AluY SINE Alu 45 292 -19 1084 181 112 84 chr12 3188636 3188896 -141093593 - AluJo SINE Alu -31 271 1 2147 94 17 0 chr12 3188900 3189197 -141093292 - AluY SINE Alu -9 302 1 1294 154 23 0 chr12 3189206 3189426 -141093063 - L1MB4 LINE L1 -29 6151 5927 24 0 0 0 chr12 3189717 3189741 -141092748 + AT_rich Low_complexity Low_complexity 1 24 0 2327 66 0 0 chr12 3189744 3190031 -141092458 - AluY SINE Alu -24 287 1 583 311 51 8 chr12 3191110 3191345 -141091144 - MIR SINE MIR -5 257 13 2071 148 0 3 chr12 3191605 3191908 -141090581 + AluSx SINE Alu 1 302 -10 568 220 0 0 chr12 3192014 3192123 -141090366 - FLAM_A SINE Alu -33 109 1 2496 84 3 0 chr12 3192241 3192549 -141089940 - AluY SINE Alu -2 309 1 189 107 0 0 chr12 3192949 3192977 -141089512 + (A)n Simple_repeat Simple_repeat 1 28 0 2091 141 3 0 chr12 3192977 3193276 -141089213 + AluSx SINE Alu 1 300 -12 1846 164 3 13 chr12 3193280 3193590 -141088899 + AluJo SINE Alu 6 312 0 300 282 121 77 chr12 3193962 3194302 -141088187 - L1MCa LINE L1 -5146 1280 926 243 299 91 0 chr12 3194750 3194827 -141087662 + L2 LINE L2 3229 3312 -1 1931 130 20 7 chr12 3194999 3195291 -141087198 + AluJb SINE Alu 1 296 -16 2327 92 0 10 chr12 3195293 3195596 -141086893 + AluSx SINE Alu 1 300 -12 2033 86 45 41 chr12 3195777 3196069 -141086420 + AluSp SINE Alu 1 293 -20 2151 81 37 37 chr12 3196134 3196429 -141086060 + AluSc SINE Alu 1 295 -14 2577 74 3 0 chr12 3196512 3196824 -141085665 - AluSq SINE Alu 0 313 1 1901 117 60 7 chr12 3197822 3198105 -141084384 + AluJb SINE Alu 1 298 -14 1813 149 4 18 chr12 3198280 3198561 -141083928 + AluJb SINE Alu 28 304 -8 2131 133 0 3 chr12 3200523 3200823 -141081666 + AluSx SINE Alu 1 299 -13 1818 129 92 4 chr12 3201148 3201419 -141081070 - AluSg SINE Alu -15 295 1 1275 110 0 0 chr12 3201419 3201592 -141080897 - AluSc SINE Alu -2 307 135 1667 178 31 3 chr12 3201604 3201890 -141080599 - AluJb SINE Alu -18 294 1 1904 133 61 0 chr12 3201934 3202212 -141080277 + AluSq SINE Alu 2 296 -17 2130 135 10 0 chr12 3202427 3202731 -141079758 - AluJb SINE Alu -5 307 1 2688 58 0 0 chr12 3203057 3203368 -141079121 - AluY SINE Alu 0 311 1 2258 53 88 0 chr12 3204293 3204576 -141077913 + AluY SINE Alu 2 309 -2 1864 136 16 52 chr12 3204664 3204974 -141077515 - AluJb SINE Alu -13 299 1 1810 130 44 0 chr12 3205020 3205290 -141077199 + AluJo SINE Alu 11 292 -20 2699 39 0 3 chr12 3205837 3206143 -141076346 + AluY SINE Alu 1 305 -6 2327 95 7 0 chr12 3206284 3206578 -141075911 + AluSx SINE Alu 5 300 -12 2573 52 0 16 chr12 3206714 3207024 -141075465 - AluY SINE Alu -5 306 2 723 162 143 19 chr12 3207072 3207226 -141075263 + FRAM SINE Alu 1 173 -3 451 260 101 54 chr12 3207251 3207293 -141075196 + L1MC4a LINE L1 5741 5780 -2028 1308 200 0 123 chr12 3207293 3207643 -141074846 + AluSx SINE Alu 1 307 -5 451 260 101 54 chr12 3207643 3207877 -141074612 + L1MC4a LINE L1 5780 6030 -1778 1888 174 7 0 chr12 3207920 3208219 -141074270 - AluJb SINE Alu -11 301 1 2113 130 3 0 chr12 3208277 3208584 -141073905 - AluSx SINE Alu 0 308 1 857 169 12 44 chr12 3208590 3208750 -141073739 - AluJb SINE Alu -25 287 133 530 150 242 8 chr12 3208912 3209032 -141073457 - MER3 DNA MER1_type -24 185 38 2189 142 0 0 chr12 3209032 3209343 -141073146 - AluSx SINE Alu -1 311 1 956 186 0 0 chr12 3209344 3209505 -141072984 - AluSg/x SINE Alu -15 295 135 1573 175 110 11 chr12 3210030 3210385 -141072104 - MLT1B LTR MaLR 0 390 1 1939 164 3 10 chr12 3210431 3210735 -141071754 - AluJb SINE Alu -10 302 1 212 0 36 0 chr12 3210820 3210848 -141071641 + (CAAAAA)n Simple_repeat Simple_repeat 3 31 0 712 127 0 0 chr12 3210872 3210982 -141071507 + AluJb SINE Alu 185 294 -18 1140 53 8 0 chr12 3210982 3211114 -141071375 + AluSc SINE Alu 1 133 -176 2052 114 17 3 chr12 3211114 3211404 -141071085 + AluSx SINE Alu 1 294 -18 2502 81 3 0 chr12 3211406 3211716 -141070773 + AluY SINE Alu 1 311 0 990 120 0 0 chr12 3211825 3211958 -141070531 + AluSq/x SINE Alu 1 133 -180 21 0 0 0 chr12 3211960 3211981 -141070508 + AT_rich Low_complexity Low_complexity 1 21 0 1637 195 13 23 chr12 3212098 3212406 -141070083 + AluJb SINE Alu 1 305 -7 408 72 0 14 chr12 3212689 3212758 -141069731 - L1MA9 LINE L1 -5 6307 6240 547 75 88 0 chr12 3212758 3212838 -141069651 - AluY SINE Alu -24 287 201 * 699 103 28 9 chr12 3212832 3212939 -141069550 - AluSq/x SINE Alu -203 110 2 2375 72 3 3 chr12 3212943 3213234 -141069255 - AluSc SINE Alu -18 291 1 2615 50 0 0 chr12 3213234 3213531 -141068958 - AluY SINE Alu -14 297 1 198 0 0 0 chr12 3213531 3213553 -141068936 + (T)n Simple_repeat Simple_repeat 1 22 0 514 86 108 21 chr12 3213554 3213647 -141068842 - U6 snRNA snRNA -6 101 1 2347 60 0 3 chr12 3213789 3214095 -141068394 + AluY SINE Alu 1 305 0 1230 148 0 0 chr12 3214102 3214278 -141068211 + AluSp SINE Alu 137 312 -1 2454 87 3 0 chr12 3214378 3214689 -141067800 - AluSp SINE Alu -1 312 1 2214 117 0 3 chr12 3214690 3214988 -141067501 - AluSq SINE Alu -16 297 1 1881 171 0 25 chr12 3215043 3215359 -141067130 - AluJb SINE Alu 0 312 5 2373 98 10 0 chr12 3215977 3216283 -141066206 - AluSp SINE Alu -4 309 1 283 312 115 10 chr12 3216531 3216760 -141065729 + L2 LINE L2 2775 3026 -246 24 0 0 0 chr12 3216915 3216939 -141065550 + AT_rich Low_complexity Low_complexity 1 24 0 992 128 0 2 chr12 3216940 3217176 -141065313 - AluJb SINE Alu -27 285 5 547 345 39 4 chr12 3217258 3217487 -141065002 - MARNA DNA Mariner -4 582 346 253 79 0 0 chr12 3217653 3217691 -141064798 - MARNA DNA Mariner -242 344 307 207 261 0 29 chr12 3217876 3217945 -141064544 + L2 LINE L2 3140 3206 -66 229 62 42 21 chr12 3218547 3218595 -141063894 + (CCCGG)n Simple_repeat Simple_repeat 3 51 0 32 67 0 0 chr12 3218796 3218856 -141063633 + GC_rich Low_complexity Low_complexity 1 60 0 211 308 0 26 chr12 3220825 3220903 -141061586 + MIR3 SINE MIR 4 79 -129 210 314 0 0 chr12 3221165 3221216 -141061273 - L2 LINE L2 -5 3308 3258 438 228 0 63 chr12 3221386 3221400 -141061089 - MIR3 SINE MIR -47 161 148 1736 71 141 31 chr12 3221400 3221572 -141060917 - AluSx SINE Alu 0 333 181 492 95 0 0 chr12 3221572 3221656 -141060833 + (TA)n Simple_repeat Simple_repeat 2 85 0 2283 101 3 0 chr12 3221656 3221943 -141060546 - AluSp SINE Alu -25 288 1 1736 71 141 31 chr12 3221943 3222074 -141060415 - AluSx SINE Alu -151 182 1 438 228 0 63 chr12 3222074 3222185 -141060304 - MIR3 SINE MIR -60 148 43 2267 101 0 49 chr12 3223756 3224082 -141058407 - AluSp SINE Alu -3 310 1 1769 166 23 26 chr12 3224461 3224768 -141057721 - AluJo SINE Alu -6 306 1 2251 60 32 7 chr12 3224869 3225152 -141057337 - AluY SINE Alu -21 290 1 27 29 0 0 chr12 3225152 3225186 -141057303 + AT_rich Low_complexity Low_complexity 1 34 0 849 168 8 0 chr12 3225189 3225320 -141057169 - AluJb SINE Alu -31 281 150 335 319 84 37 chr12 3225457 3225648 -141056841 + L3 LINE CR1 438 637 -940 2286 111 7 7 chr12 3225712 3226018 -141056471 - AluSg SINE Alu -3 307 2 2339 105 0 0 chr12 3226021 3226315 -141056174 - AluSx SINE Alu -18 294 1 270 267 56 11 chr12 3226339 3226429 -141056060 + L3 LINE CR1 715 808 -769 391 267 170 30 chr12 3226443 3226814 -141055675 - L1ME4a LINE L1 -15 6106 5684 409 280 30 30 chr12 3226823 3226955 -141055534 + L3 LINE CR1 794 925 -652 229 302 62 21 chr12 3226973 3227069 -141055420 - MIR SINE MIR -6 256 157 2485 83 3 0 chr12 3227392 3227694 -141054795 - AluSp SINE Alu -10 303 1 1080 138 16 122 chr12 3227694 3227948 -141054541 - AluJo SINE Alu -1 311 85 185 0 40 0 chr12 3227948 3227973 -141054516 + (TTTTG)n Simple_repeat Simple_repeat 2 27 0 1818 160 0 24 chr12 3227976 3228264 -141054225 - AluJo SINE Alu -31 281 1 944 221 88 48 chr12 3228426 3228756 -141053733 - MER2 DNA MER2_type -1 343 1 296 316 32 0 chr12 3228779 3228874 -141053615 + L3 LINE CR1 1477 1574 -3 213 220 0 20 chr12 3228872 3228922 -141053567 + MIR3 SINE MIR 114 162 -46 * 870 163 0 7 chr12 3229253 3229388 -141053101 + FLAM_A SINE Alu 1 134 -8 844 198 47 9 chr12 3229391 3229603 -141052886 - MER33 DNA MER1_type -83 241 22 471 231 267 15 chr12 3229605 3229800 -141052689 + MIR SINE MIR 14 257 -5 271 271 59 0 chr12 3230371 3230456 -141052033 - L2 LINE L2 -27 3286 3197 2392 60 7 20 chr12 3230740 3231083 -141051406 - AluY SINE Alu 0 311 1 2263 123 0 0 chr12 3231109 3231410 -141051079 - AluSx SINE Alu 0 312 12 1880 156 0 11 chr12 3231410 3231690 -141050799 - AluJo SINE Alu -33 279 1 2613 65 0 3 chr12 3231800 3232106 -141050383 - AluSp SINE Alu -5 308 4 746 183 83 65 chr12 3232152 3232442 -141050047 - L1ME1 LINE L1 -5 6161 5867 1318 164 44 0 chr12 3232445 3232670 -141049819 - AluJb SINE Alu -77 235 1 270 135 14 122 chr12 3232673 3232747 -141049742 - L1ME1 LINE L1 -859 5287 5222 2173 106 26 10 chr12 3233309 3233611 -141048878 - AluSx SINE Alu -5 307 1 23 33 0 0 chr12 3234370 3234400 -141048089 + AT_rich Low_complexity Low_complexity 1 30 0 2385 176 50 32 chr12 3234492 3234665 -141047824 - L1MC2 LINE L1 -5 6339 6171 2282 99 3 0 chr12 3234665 3234996 -141047493 - AluSp SINE Alu 0 332 1 2385 176 50 32 chr12 3234996 3235317 -141047172 - L1MC2 LINE L1 -173 6171 5831 2192 112 3 23 chr12 3235317 3235620 -141046869 - AluSx SINE Alu -15 297 1 2385 176 50 32 chr12 3235620 3235658 -141046831 - L1MC2 LINE L1 -513 5831 5795 375 351 8 0 chr12 3235670 3235801 -141046688 - MIR SINE MIR -55 153 22 218 319 97 43 chr12 3236378 3236585 -141045904 - MIR SINE MIR -32 230 13 236 243 14 0 chr12 3236595 3236669 -141045820 + CT-rich Low_complexity Low_complexity 2 76 0 295 308 96 25 chr12 3236840 3237038 -141045451 - MIR SINE MIR -34 228 17 2007 165 27 87 chr12 3237519 3237685 -141044804 - L1MB3 LINE L1 -9 6174 6000 1898 118 34 34 chr12 3237685 3238011 -141044478 - AluSx SINE Alu 0 312 2 2007 165 27 87 chr12 3238011 3238222 -141044267 - L1MB3 LINE L1 -183 6000 5830 2417 89 0 0 chr12 3238222 3238524 -141043965 - AluSx SINE Alu -10 302 1 2007 165 27 87 chr12 3238524 3238630 -141043859 - L1MB3 LINE L1 -353 5830 5719 1208 212 62 50 chr12 3238650 3238989 -141043500 + MER82 DNA MER2_type 311 653 0 619 189 114 0 chr12 3239024 3239156 -141043333 - MSTD LTR MaLR -249 147 1 187 298 0 0 chr12 3239161 3239208 -141043281 + L2 LINE L2 3262 3308 -5 388 222 67 0 chr12 3239397 3239487 -141043002 + MIR SINE MIR 53 148 -60 2302 114 0 0 chr12 3239759 3240058 -141042431 + AluSx SINE Alu 1 299 -13 473 123 37 0 chr12 3240088 3240169 -141042320 + AluS SINE Alu 2 85 -227 369 339 62 0 chr12 3240241 3240418 -141042071 + MIR SINE MIR 57 244 -18 198 248 0 119 chr12 3240847 3240956 -141041533 + L2 LINE L2 3142 3237 -76 21 57 0 0 chr12 3242465 3242500 -141039989 + AT_rich Low_complexity Low_complexity 1 35 0 442 311 43 24 chr12 3242753 3242917 -141039572 - MIR3 SINE MIR -8 200 34 396 285 182 31 chr12 3243094 3243413 -141039076 - L2 LINE L2 -7 3265 2899 211 360 182 11 chr12 3243558 3243822 -141038667 - L2 LINE L2 -542 2772 2464 3209 113 26 85 chr12 3243824 3244426 -141038063 - Tigger3(Golem) DNA MER2_type 0 3029 2466 2279 78 0 3 chr12 3244426 3244720 -141037769 + AluY SINE Alu 16 308 -3 3209 113 26 85 chr12 3244720 3244762 -141037727 - Tigger3(Golem) DNA MER2_type -563 2466 2423 272 217 0 12 chr12 3244923 3245006 -141037483 + G-rich Low_complexity Low_complexity 5 86 0 284 279 7 7 chr12 3245028 3245178 -141037311 + G-rich Low_complexity Low_complexity 1 150 0 2234 79 3 10 chr12 3245271 3245588 -141036901 + AluSx SINE Alu 1 315 0 310 211 53 0 chr12 3245595 3245690 -141036799 - L1M4 LINE L1 -1554 4592 4493 3174 198 43 23 chr12 3245692 3245718 -141036771 + MER21B LTR ERV1 1 25 -838 2166 70 37 20 chr12 3245718 3246016 -141036473 + AluSq SINE Alu 1 303 -10 3174 198 43 23 chr12 3246016 3246647 -141035842 + MER21B LTR ERV1 25 671 -192 488 161 0 25 chr12 3246647 3246728 -141035761 - AluJ/FLAM SINE Alu -232 80 2 608 268 86 67 chr12 3246759 3246923 -141035566 - L1MEd LINE L1 -4715 1595 1436 1974 134 0 3 chr12 3246923 3247222 -141035267 - AluSx SINE Alu -9 303 6 608 268 86 67 chr12 3247222 3247774 -141034715 - L1MEd LINE L1 -4874 1436 826 371 366 114 25 chr12 3247778 3247947 -141034542 - L1MEd LINE L1 -5526 593 440 2079 121 16 0 chr12 3247947 3248253 -141034236 - AluSx SINE Alu -1 311 1 371 366 114 25 chr12 3248253 3248400 -141034089 - L1MEd LINE L1 -5679 440 249 1430 164 53 49 chr12 3248405 3248709 -141033780 + AluJo SINE Alu 1 305 -7 226 272 0 25 chr12 3248758 3248839 -141033650 - L1MEd LINE L1 -6037 82 4 1996 141 0 10 chr12 3248867 3249166 -141033323 + AluSx SINE Alu 1 296 -16 238 296 47 7 chr12 3249337 3249462 -141033027 + MIR SINE MIR 20 152 -56 2315 77 0 0 chr12 3249503 3249802 -141032687 - AluSx SINE Alu -13 299 1 1072 227 36 0 chr12 3250584 3250831 -141031658 - L1MB2 LINE L1 -2 6169 5914 554 128 0 23 chr12 3250847 3250933 -141031556 - AluJ/FLAM SINE Alu -227 85 2 1859 155 0 22 chr12 3250944 3251261 -141031228 - AluJb SINE Alu -2 310 1 1614 185 42 5 chr12 3251262 3251584 -141030905 - L1MB2 LINE L1 -222 5949 5559 2070 87 0 4 chr12 3251584 3251859 -141030630 - AluSx SINE Alu -38 274 1 1614 185 42 5 chr12 3251859 3251898 -141030591 - L1MB2 LINE L1 -612 5559 5523 190 366 12 0 chr12 3251996 3252078 -141030411 - MIR3 SINE MIR -41 167 85 214 241 52 0 chr12 3252852 3252910 -141029579 - L2 LINE L2 0 3272 3212 1670 169 0 22 chr12 3253204 3253523 -141028966 + AluJo SINE Alu 1 312 0 1070 134 0 12 chr12 3253864 3253879 -141028610 - AluSg/x SINE Alu -14 296 282 2167 106 3 6 chr12 3253879 3254191 -141028298 - AluSp SINE Alu 0 313 3 192 40 0 0 chr12 3254191 3254216 -141028273 + (TTTTC)n Simple_repeat Simple_repeat 2 26 0 1070 134 0 12 chr12 3254216 3254370 -141028119 - AluSg/x SINE Alu -26 284 128 857 237 72 47 chr12 3254434 3254713 -141027776 - MLT1J LTR MaLR 0 511 226 2269 164 29 40 chr12 3255303 3255748 -141026741 - L1MB3 LINE L1 -10 6173 5734 295 295 59 23 chr12 3256114 3256289 -141026200 - MIR3 SINE MIR -62 146 12 2367 162 52 0 chr12 3257734 3258141 -141024348 - MSTC LTR MaLR 0 428 1 230 208 16 70 chr12 3258263 3258355 -141024134 - MIR SINE MIR -95 113 32 458 185 56 9 chr12 3258569 3258677 -141023812 + MIR SINE MIR 52 164 -98 4159 146 27 52 chr12 3258703 3258971 -141023518 - L1MB4 LINE L1 -2 6178 5905 2214 83 0 23 chr12 3258971 3259272 -141023217 + AluSg SINE Alu 1 294 -16 4159 146 27 52 chr12 3259272 3259301 -141023188 - L1MB4 LINE L1 -275 5905 5877 1929 102 21 25 chr12 3259301 3259586 -141022903 + AluSx SINE Alu 12 295 -17 4159 146 27 52 chr12 3259586 3260115 -141022374 - L1MB4 LINE L1 -303 5877 5372 268 274 113 28 chr12 3261832 3261938 -141020551 + MIR3 SINE MIR 72 186 -22 484 293 116 0 chr12 3262001 3262165 -141020324 + MIR SINE MIR 26 208 -54 1935 162 21 60 chr12 3262548 3262767 -141019722 + L1MA7 LINE L1 5844 6039 -252 1551 158 3 100 chr12 3262767 3262966 -141019523 - AluJo SINE Alu -4 308 154 2306 87 0 10 chr12 3262966 3263278 -141019211 - AluY SINE Alu 0 311 3 1551 158 3 100 chr12 3263278 3263419 -141019070 - AluJo SINE Alu -158 154 1 1935 162 21 60 chr12 3263419 3263631 -141018858 + L1MA7 LINE L1 6039 6258 -33 1340 167 21 17 chr12 3263631 3263864 -141018625 + MER46A DNA MER2_type 1 234 -2 2128 99 36 0 chr12 3263893 3264195 -141018294 + AluSp SINE Alu 1 313 0 2059 113 10 7 chr12 3264225 3264527 -141017962 + AluSx SINE Alu 1 303 -9 514 193 0 0 chr12 3264972 3265060 -141017429 + MER69A DNA AcHobo 3 90 -87 627 237 0 7 chr12 3265061 3265196 -141017293 - L1MA10 LINE L1 -12 6322 6189 343 232 50 10 chr12 3265197 3265296 -141017193 + MER69A DNA AcHobo 75 177 0 900 260 153 41 chr12 3265459 3266182 -141016307 - L2 LINE L2 -2 3311 2497 216 367 22 43 chr12 3266192 3266331 -141016158 - L2 LINE L2 -51 3221 3086 2299 89 0 9 chr12 3266627 3266942 -141015547 + AluSx SINE Alu 1 312 0 2143 117 0 3 chr12 3268706 3269013 -141013476 - AluSq SINE Alu -7 306 1 2231 113 0 0 chr12 3269145 3269447 -141013042 - AluSx SINE Alu -10 302 1 1425 203 10 7 chr12 3270432 3270733 -141011756 - AluJo SINE Alu -10 302 1 21 0 0 0 chr12 3270740 3270761 -141011728 + AT_rich Low_complexity Low_complexity 1 21 0 2158 88 18 0 chr12 3270938 3271222 -141011267 + AluSx SINE Alu 1 289 -23 613 161 194 0 chr12 3271243 3271367 -141011122 + FAM SINE Alu 16 163 -22 242 347 13 0 chr12 3271369 3271444 -141011045 + MIR3 SINE MIR 126 201 -7 423 254 51 14 chr12 3272041 3272179 -141010310 + MIR3 SINE MIR 37 179 -29 817 146 36 0 chr12 3273137 3273274 -141009215 - AluJb SINE Alu -7 305 164 580 179 60 0 chr12 3273382 3273499 -141008990 + AluJo SINE Alu 5 128 -174 1677 189 0 0 chr12 3273513 3273809 -141008680 - AluJb SINE Alu -16 296 1 998 190 18 0 chr12 3273940 3274103 -141008386 + AluJo SINE Alu 137 302 0 195 359 13 0 chr12 3274511 3274589 -141007900 - L2 LINE L2 -8 3264 3186 294 323 49 0 chr12 3274649 3274776 -141007713 - MIR SINE MIR -67 141 33 21 0 0 0 chr12 3274974 3274995 -141007494 + GC_rich Low_complexity Low_complexity 1 21 0 186 219 24 0 chr12 3275292 3275333 -141007156 - MIR SINE MIR -118 144 103 270 303 15 38 chr12 3277608 3277740 -141004749 - L2 LINE L2 -1 3312 3184 207 270 79 67 chr12 3277720 3277809 -141004680 + L2 LINE L2 3144 3233 -80 * 267 289 19 19 chr12 3278357 3278461 -141004028 + CT-rich Low_complexity Low_complexity 1 104 0 2177 114 0 3 chr12 3278786 3279092 -141003397 - AluSx SINE Alu -7 305 1 357 269 83 40 chr12 3279165 3279317 -141003172 - MIR SINE MIR -58 150 6 1845 113 17 26 chr12 3280987 3281289 -141001200 + AluSg SINE Alu 1 299 -11 913 175 48 137 chr12 3281302 3281639 -141000850 + MLT1A1 LTR MaLR 1 307 -58 1758 249 87 96 chr12 3281920 3281997 -141000492 - HAL1 LINE L1 -6 2501 2425 2003 104 7 23 chr12 3281997 3282305 -141000184 + AluSg SINE Alu 1 303 -7 1758 249 87 96 chr12 3282305 3282578 -140999911 - HAL1 LINE L1 -82 2425 2151 2028 35 24 12 chr12 3282578 3282832 -140999657 - AluY SINE Alu -19 292 36 1758 249 87 96 chr12 3282832 3282883 -140999606 - HAL1 LINE L1 -356 2151 2101 1722 157 61 0 chr12 3282883 3283176 -140999313 + AluJb SINE Alu 1 311 -1 1758 249 87 96 chr12 3283176 3283433 -140999056 - HAL1 LINE L1 -406 2101 1843 2110 110 10 0 chr12 3283433 3283733 -140998756 - AluSx SINE Alu -9 303 1 1758 249 87 96 chr12 3283733 3284016 -140998473 - HAL1 LINE L1 -664 1843 1559 1850 151 0 29 chr12 3284016 3284328 -140998161 - AluSx SINE Alu -9 303 1 1758 249 87 96 chr12 3284328 3284792 -140997697 - HAL1 LINE L1 -948 1559 1105 632 279 109 20 chr12 3284793 3285040 -140997449 - MLT1J LTR MaLR 0 511 243 1656 98 114 4 chr12 3285503 3285757 -140996732 - AluSq SINE Alu -31 282 1 421 282 60 0 chr12 3285762 3285879 -140996610 - HAL1 LINE L1 -1558 949 826 786 164 15 15 chr12 3285942 3286076 -140996413 + AluJo SINE Alu 2 135 -177 1698 188 0 0 chr12 3286076 3286368 -140996121 + AluSx SINE Alu 1 292 -20 3782 151 71 50 chr12 3286368 3287132 -140995357 - L1MB8 LINE L1 -57 6121 5374 1866 155 7 0 chr12 3287132 3287422 -140995067 - AluSx SINE Alu -20 292 1 3782 151 71 50 chr12 3287422 3287556 -140994933 - L1MB8 LINE L1 -804 5374 5244 1741 141 19 48 chr12 3287556 3287725 -140994764 - AluJo SINE Alu -8 304 147 2473 53 0 3 chr12 3287725 3288029 -140994460 - AluY SINE Alu -8 303 1 1741 141 19 48 chr12 3288029 3288172 -140994317 - AluJo SINE Alu -165 147 1 3782 151 71 50 chr12 3288172 3288277 -140994212 - L1MB8 LINE L1 -934 5244 5093 688 299 31 63 chr12 3288281 3288662 -140993827 - HAL1 LINE L1 -1703 804 436 801 181 0 0 chr12 3288690 3288828 -140993661 - FLAM_C SINE Alu -5 138 1 266 306 56 21 chr12 3289071 3289215 -140993274 - HAL1 LINE L1 -2358 149 1 190 324 46 56 chr12 3289964 3290072 -140992417 - MIR SINE MIR -79 183 77 482 289 64 46 chr12 3290155 3290373 -140992116 - MIR SINE MIR -40 222 1 262 304 56 0 chr12 3290992 3291104 -140991385 + MIR SINE MIR 48 165 -43 819 139 0 0 chr12 3293144 3293259 -140989230 + AluJb SINE Alu 3 117 -195 2235 113 0 23 chr12 3293303 3293612 -140988877 + AluSx SINE Alu 1 302 -10 1998 182 7 0 chr12 3294031 3294339 -140988150 + AluJo SINE Alu 1 310 -2 210 235 44 29 chr12 3294349 3294417 -140988072 + MIR SINE MIR 36 104 -104 223 262 74 94 chr12 3296868 3297017 -140985472 - MIR3 SINE MIR -22 186 41 349 300 71 21 chr12 3297616 3297756 -140984733 - MER5B DNA MER1_type 0 178 32 682 222 86 50 chr12 3297756 3297977 -140984512 - L1MD2 LINE L1 0 6359 6131 2372 87 10 0 chr12 3298180 3298478 -140984011 - AluSx SINE Alu -11 301 1 244 203 119 76 chr12 3299979 3300097 -140982392 + MIR SINE MIR 24 146 -116 258 95 0 0 chr12 3300155 3300197 -140982292 + (TCCC)n Simple_repeat Simple_repeat 1 42 0 572 192 295 5 chr12 3300406 3300599 -140981890 + MIR SINE MIR 14 262 0 314 184 138 0 chr12 3301744 3301831 -140980658 - MIR SINE MIR -70 192 94 238 275 25 50 chr12 3301849 3301929 -140980560 - L2 LINE L2 0 3313 3236 337 285 134 18 chr12 3301983 3302418 -140980071 - L2 LINE L2 -188 3125 2644 189 0 0 0 chr12 3302975 3302996 -140979493 + (AGGGGG)n Simple_repeat Simple_repeat 6 26 0 2510 90 0 0 chr12 3303125 3303435 -140979054 + AluSq SINE Alu 1 310 -3 207 307 67 0 chr12 3303468 3303543 -140978946 + MIR SINE MIR 70 149 -113 2031 126 48 3 chr12 3303934 3304228 -140978261 + AluJb SINE Alu 1 307 -5 796 188 0 0 chr12 3305325 3305458 -140977031 - FLAM_A SINE Alu 0 133 1 1972 125 11 57 chr12 3305489 3305710 -140976779 + MER1B DNA MER1_type 1 202 -2508 2447 59 7 20 chr12 3305710 3306016 -140976473 + AluY SINE Alu 1 302 -9 1972 125 11 57 chr12 3306016 3306147 -140976342 + MER1B DNA MER1_type 202 337 0 315 309 36 52 chr12 3306722 3306916 -140975573 - L2 LINE L2 -19 3294 3104 729 179 0 8 chr12 3306957 3307091 -140975398 - FLAM_A SINE Alu -9 133 1 1900 163 3 13 chr12 3307100 3307401 -140975088 - AluJb SINE Alu -13 299 2 1205 186 18 63 chr12 3307401 3307503 -140974986 + MER58B DNA MER1_type 78 183 -2237 1990 137 27 0 chr12 3307503 3307796 -140974693 - AluJb SINE Alu -11 301 1 1205 186 18 63 chr12 3307796 3307968 -140974521 + MER58B DNA MER1_type 183 341 0 1501 302 122 7 chr12 3308133 3308874 -140973615 - HAL1 LINE L1 -1480 1027 202 406 135 11 11 chr12 3308876 3308930 -140973559 + CT-rich Low_complexity Low_complexity 2 58 -32 2249 115 0 0 chr12 3308930 3309218 -140973271 - AluSx SINE Alu -24 288 1 406 135 11 11 chr12 3309218 3309252 -140973237 + CT-rich Low_complexity Low_complexity 57 90 0 1645 169 0 4 chr12 3309288 3309543 -140972946 - AluJb SINE Alu -54 258 5 390 88 50 25 chr12 3309557 3309637 -140972852 + CT-rich Low_complexity Low_complexity 1 82 0 377 70 18 0 chr12 3309653 3309710 -140972779 + (TCCC)n Simple_repeat Simple_repeat 1 58 0 841 126 11 27 chr12 3309711 3309894 -140972595 + (TTTC)n Simple_repeat Simple_repeat 1 180 0 257 203 43 0 chr12 3309902 3309971 -140972518 + CT-rich Low_complexity Low_complexity 6 77 0 272 170 0 21 chr12 3309972 3310019 -140972470 - Alu SINE Alu -22 280 235 256 279 113 81 chr12 3310022 3310108 -140972381 - MLT1J LTR MaLR -52 459 377 1414 199 57 4 chr12 3310108 3310389 -140972100 - AluSx SINE Alu -16 296 1 256 279 113 81 chr12 3310389 3310524 -140971965 - MLT1J LTR MaLR -134 377 231 2401 68 10 32 chr12 3310693 3311002 -140971487 + AluSp SINE Alu 1 302 -11 1280 168 44 103 chr12 3311015 3311403 -140971086 + MLT1A1 LTR MaLR 1 365 0 612 242 199 5 chr12 3311600 3311786 -140970703 - MLT1J LTR MaLR -257 254 33 2050 145 0 3 chr12 3311864 3312161 -140970328 - AluJo SINE Alu -16 296 1 1737 182 10 22 chr12 3312161 3312473 -140970016 - AluJo SINE Alu -3 309 1 2623 48 0 13 chr12 3312519 3312832 -140969657 - AluY SINE Alu -2 309 1 264 315 87 3 chr12 3312839 3312983 -140969506 - MIR SINE MIR -50 212 58 381 151 0 0 chr12 3313169 3313255 -140969234 + (CCTG)n Simple_repeat Simple_repeat 3 88 0 1311 170 0 38 chr12 3313255 3313490 -140968999 - AluJb SINE Alu -3 309 84 216 274 43 4 chr12 3313975 3314067 -140968422 - MIR SINE MIR -104 104 12 650 245 21 7 chr12 3314455 3314598 -140967891 - L2 LINE L2 -2 3311 3167 833 163 0 16 chr12 3314803 3314932 -140967557 + FLAM_C SINE Alu 1 127 -16 207 322 17 26 chr12 3315046 3315161 -140967328 + MER5A DNA MER1_type 4 117 -72 829 236 16 16 chr12 3315635 3315826 -140966663 - AluJo SINE Alu 0 312 122 189 0 0 0 chr12 3316753 3316774 -140965715 + (TTTTG)n Simple_repeat Simple_repeat 2 22 0 2693 46 0 0 chr12 3316863 3317170 -140965319 + AluY SINE Alu 1 307 -4 201 74 0 0 chr12 3317399 3317426 -140965063 + (TTTTC)n Simple_repeat Simple_repeat 2 28 0 1552 158 0 0 chr12 3317437 3317665 -140964824 - AluJo SINE Alu -84 228 1 2663 42 0 7 chr12 3317674 3317984 -140964505 - AluY SINE Alu -3 308 1 332 201 163 105 chr12 3318007 3318301 -140964188 - L1MC5 LINE L1 -945 6863 6553 2342 95 7 7 chr12 3318866 3319170 -140963319 - AluSx SINE Alu -8 304 1 1821 209 150 4 chr12 3319422 3319930 -140962559 + MLT1E LTR MaLR 8 589 -4 807 336 110 44 chr12 3319946 3320876 -140961613 + L2 LINE L2 379 1389 -1925 1721 213 0 0 chr12 3320876 3321181 -140961308 - AluJb SINE Alu -7 305 1 807 336 110 44 chr12 3321181 3321303 -140961186 + L2 LINE L2 1389 1501 -1813 2527 165 53 48 chr12 3321324 3321911 -140960578 + LTR8A LTR ERV1 37 626 -101 894 170 19 94 chr12 3321905 3322037 -140960452 + LTR8 LTR ERV1 496 608 -83 * 2292 84 0 0 chr12 3322037 3322311 -140960178 + AluSx SINE Alu 25 298 -14 894 170 19 94 chr12 3322311 3322390 -140960099 + LTR8 LTR ERV1 608 691 0 326 226 189 3 chr12 3322502 3322663 -140959826 - L1ME LINE L1 -4970 1089 826 643 173 0 0 chr12 3322698 3322808 -140959681 - FLAM_A SINE Alu -10 132 23 1773 239 20 93 chr12 3322824 3323300 -140959189 - L1ME LINE L1 -5168 902 493 2255 99 3 0 chr12 3323300 3323604 -140958885 - AluSp SINE Alu 0 305 1 1773 239 20 93 chr12 3323604 3323838 -140958651 - L1ME LINE L1 -5577 493 243 3024 128 14 10 chr12 3323838 3324331 -140958158 + MER4D LTR ERV1 1 495 -408 1350 189 0 0 chr12 3324344 3324572 -140957917 + AluJb SINE Alu 85 312 0 2134 145 0 10 chr12 3324573 3324877 -140957612 + AluJb SINE Alu 1 301 -11 881 129 30 89 chr12 3324877 3325079 -140957410 + MER4E LTR ERV1 429 618 -161 2342 103 0 3 chr12 3325082 3325383 -140957106 - AluY SINE Alu -11 300 1 2261 230 116 14 chr12 3325398 3326064 -140956425 + MER50 LTR ERV1 1 734 0 1067 153 0 6 chr12 3326064 3326225 -140956264 + MER4D LTR ERV1 744 903 0 537 292 12 56 chr12 3326225 3326479 -140956010 - L1ME LINE L1 -5824 246 1 469 304 70 11 chr12 3326503 3326773 -140955716 + L2 LINE L2 1685 1970 -1344 1694 186 0 49 chr12 3326863 3327170 -140955319 - AluJo SINE Alu -20 292 1 2734 45 0 0 chr12 3327236 3327544 -140954945 - AluY SINE Alu -3 308 1 237 83 0 0 chr12 3328334 3328370 -140954119 + (CA)n Simple_repeat Simple_repeat 1 36 0 1071 195 0 0 chr12 3328528 3328713 -140953776 + MER58A DNA MER1_type 39 223 -1 363 181 71 71 chr12 3328761 3328888 -140953601 + MER53 DNA DNA 1 127 -62 23 78 0 0 chr12 3329285 3329336 -140953153 + AT_rich Low_complexity Low_complexity 1 51 0 847 129 9 0 chr12 3329346 3329462 -140953027 - FLAM_C SINE Alu -24 119 3 2403 93 3 13 chr12 3330626 3330939 -140951550 - AluSx SINE Alu 0 312 3 2351 80 7 3 chr12 3330944 3331243 -140951246 - AluSx SINE Alu -12 300 1 2189 91 51 0 chr12 3331305 3331581 -140950908 - AluSx SINE Alu -22 290 1 1013 219 32 24 chr12 3331714 3331960 -140950529 + MIR SINE MIR 13 260 -2 440 198 86 9 chr12 3332272 3332388 -140950101 + MER94 DNA DNA 10 134 0 1871 124 42 35 chr12 3332825 3333108 -140949381 - AluJb SINE Alu -27 285 1 1477 131 3 134 chr12 3333129 3333450 -140949039 + AluJo SINE Alu 33 311 -1 285 267 184 73 chr12 3333461 3333549 -140948940 - MIR SINE MIR -6 256 179 2501 77 7 0 chr12 3333549 3333849 -140948640 - AluSx SINE Alu -6 306 5 285 267 184 73 chr12 3333849 3333966 -140948523 - MIR SINE MIR -83 179 28 1463 169 61 32 chr12 3334460 3334739 -140947750 - AluJo SINE Alu -25 287 1 1832 113 21 17 chr12 3334833 3335124 -140947365 + AluJb SINE Alu 21 312 0 362 92 0 15 chr12 3335738 3335803 -140946686 + (CCCCG)n Simple_repeat Simple_repeat 3 66 0 180 0 0 0 chr12 3335845 3335865 -140946624 + (CGG)n Simple_repeat Simple_repeat 2 21 0 22 0 0 0 chr12 3335917 3335939 -140946550 + GC_rich Low_complexity Low_complexity 1 22 0 195 189 0 0 chr12 3336802 3336839 -140945650 + L2 LINE L2 3019 3055 -217 327 311 14 74 chr12 3337324 3337431 -140945058 - MIR3 SINE MIR 0 262 150 2295 101 3 0 chr12 3337431 3337727 -140944762 - AluSx SINE Alu -7 305 9 327 311 14 74 chr12 3337727 3337896 -140944593 - MIR3 SINE MIR -112 150 3 2350 125 0 0 chr12 3337905 3338218 -140944271 - AluSq SINE Alu 0 313 1 1885 141 9 58 chr12 3338220 3338546 -140943943 - AluJo SINE Alu -2 310 1 231 306 117 18 chr12 3338576 3338687 -140943802 + MIR3 SINE MIR 68 189 -19 2242 99 3 10 chr12 3338788 3339092 -140943397 - AluSg SINE Alu -7 303 2 775 167 107 9 chr12 3339092 3339274 -140943215 - L1MB2 LINE L1 -20 6163 5955 459 339 30 0 chr12 3339473 3339641 -140942848 + MIR SINE MIR 90 262 0 1417 170 78 35 chr12 3340141 3340266 -140942223 + AluJo SINE Alu 1 119 -193 351 0 0 0 chr12 3340266 3340305 -140942184 + (TG)n Simple_repeat Simple_repeat 2 40 0 225 0 0 0 chr12 3340304 3340329 -140942160 + (TA)n Simple_repeat Simple_repeat 2 26 0 * 1417 170 78 35 chr12 3340305 3340485 -140942004 + AluJo SINE Alu 119 294 -18 230 299 58 11 chr12 3340487 3340574 -140941915 - L2 LINE L2 -49 3264 3174 226 253 80 0 chr12 3340911 3340986 -140941503 - L2 LINE L2 0 3313 3233 202 260 0 0 chr12 3341285 3341335 -140941154 + L2 LINE L2 3178 3227 -86 437 309 94 6 chr12 3341814 3341995 -140940494 - MER117 DNA MER1_type 0 197 1 186 330 11 32 chr12 3343173 3343267 -140939222 - MIR SINE MIR -66 196 105 551 190 157 0 chr12 3343578 3343699 -140938790 + AluSg SINE Alu 3 142 -168 321 285 29 44 chr12 3344065 3344202 -140938287 + MIR3 SINE MIR 52 186 -22 228 288 30 15 chr12 3345194 3345260 -140937229 - MER91C DNA MER1_type -1 189 123 1682 157 49 28 chr12 3345712 3345998 -140936491 + AluJo SINE Alu 1 292 -20 2157 120 3 3 chr12 3346002 3346293 -140936196 + AluSg SINE Alu 3 293 -17 231 224 53 13 chr12 3346296 3346372 -140936117 + MER91C DNA MER1_type 62 140 0 2620 62 0 0 chr12 3347425 3347729 -140934760 + AluY SINE Alu 1 304 -7 982 140 17 51 chr12 3348095 3348273 -140934216 + AluSg/x SINE Alu 129 300 -10 282 267 45 94 chr12 3348288 3348490 -140933999 + HAL1 LINE L1 1563 1754 -753 886 127 0 0 chr12 3348557 3348683 -140933806 + FLAM_C SINE Alu 1 126 -17 32 57 0 0 chr12 3348848 3348901 -140933588 + AT_rich Low_complexity Low_complexity 1 53 0 1312 85 0 0 chr12 3349648 3349857 -140932632 + AluY SINE Alu 121 329 0 361 305 126 23 chr12 3349977 3350279 -140932210 + L2 LINE L2 2124 2456 -858 1601 153 35 78 chr12 3350282 3350593 -140931896 + Tigger3(Golem) DNA MER2_type 1 324 -2704 2287 118 0 6 chr12 3350593 3350906 -140931583 - AluSx SINE Alu -1 311 1 1601 153 35 78 chr12 3350906 3350966 -140931523 + Tigger3(Golem) DNA MER2_type 324 2153 -875 606 269 188 43 chr12 3351100 3351520 -140930969 - MLT1H LTR MaLR -16 533 53 269 190 69 0 chr12 3354385 3354443 -140928046 + L2 LINE L2 3242 3303 -10 1890 162 3 13 chr12 3354667 3354969 -140927520 - AluJo SINE Alu -13 299 1 2268 92 7 0 chr12 3355324 3355637 -140926852 - AluSp SINE Alu 0 316 2 8512 40 10 14 chr12 3355665 3356663 -140925826 - SVA Other Other 0 1386 393 186 293 98 12 chr12 3357109 3357191 -140925298 + L2 LINE L2 3210 3298 -15 261 0 0 0 chr12 3357193 3357222 -140925267 + (TGAA)n Simple_repeat Simple_repeat 1 29 0 2366 49 17 21 chr12 3357357 3357645 -140924844 - AluY SINE Alu -2 309 23 345 292 62 9 chr12 3358807 3358920 -140923569 + MIR3 SINE MIR 87 205 -3 204 318 15 0 chr12 3359104 3359170 -140923319 + L3 LINE CR1 812 878 -699 2014 156 0 6 chr12 3359408 3359722 -140922767 - AluSx SINE Alu 0 312 1 3351 259 51 34 chr12 3359745 3360513 -140921976 - L1MEc LINE L1 -5063 1333 531 2584 50 0 10 chr12 3360513 3360816 -140921673 - AluY SINE Alu -11 300 1 3351 259 51 34 chr12 3360816 3361331 -140921158 - L1MEc LINE L1 -5865 531 27 535 321 139 29 chr12 3361681 3362127 -140920362 + L3 LINE CR1 1054 1548 -29 1665 184 3 14 chr12 3362791 3363085 -140919404 - AluJo SINE Alu -7 305 15 2598 53 0 10 chr12 3363108 3363410 -140919079 - AluY SINE Alu -12 299 1 443 167 0 10 chr12 3363414 3363515 -140918974 + L1MA7 LINE L1 6045 6153 -150 268 294 42 17 chr12 3363591 3363710 -140918779 - MIR SINE MIR -55 153 32 193 324 29 0 chr12 3364090 3364158 -140918331 - L2 LINE L2 -16 3256 3187 669 271 206 2 chr12 3364459 3364983 -140917506 - L2 LINE L2 -6 3307 2670 2176 141 0 3 chr12 3365014 3365327 -140917162 - AluJo SINE Alu 0 312 1 386 342 151 4 chr12 3365329 3365554 -140916935 - MIR SINE MIR -2 260 3 684 200 0 0 chr12 3366411 3366571 -140915918 + (CA)n Simple_repeat Simple_repeat 1 160 0 1813 170 0 3 chr12 3367170 3367477 -140915012 + AluJb SINE Alu 1 306 0 1699 233 71 99 chr12 3368934 3369623 -140912866 - HAL1 LINE L1 -839 1668 1012 2393 64 7 3 chr12 3369623 3369918 -140912571 - AluY SINE Alu -15 296 1 1699 233 71 99 chr12 3369918 3370209 -140912280 - HAL1 LINE L1 -1495 1012 715 2467 70 3 3 chr12 3370221 3370520 -140911969 + AluSq SINE Alu 2 300 -13 1193 255 184 22 chr12 3370521 3371058 -140911431 + HAL1 LINE L1 84 707 -1800 229 287 58 0 chr12 3371291 3371378 -140911111 + L2 LINE L2 3180 3271 -1 224 322 33 0 chr12 3371692 3371782 -140910707 + MIR3 SINE MIR 89 181 -27 544 307 13 42 chr12 3372041 3372279 -140910210 + MIR SINE MIR 20 250 -12 2106 118 13 26 chr12 3372310 3372616 -140909873 - AluSx SINE Alu -10 302 1 219 280 98 0 chr12 3372640 3372708 -140909781 - MIR SINE MIR -64 144 78 608 174 28 141 chr12 3372750 3372882 -140909607 - L1 LINE L1 -2711 3435 3290 2407 84 7 0 chr12 3372882 3373179 -140909310 - AluSp SINE Alu -14 299 1 608 174 28 141 chr12 3373179 3373370 -140909119 - L1 LINE L1 -2856 3290 3155 1683 188 9 31 chr12 3373370 3373689 -140908800 - AluJo SINE Alu 0 312 1 608 174 28 141 chr12 3373689 3373727 -140908762 - L1 LINE L1 -2991 3155 3114 670 265 151 12 chr12 3373754 3374078 -140908411 - L2 LINE L2 -8 3305 2937 277 289 56 106 chr12 3374712 3374794 -140907695 + L2 LINE L2 3138 3212 -60 1420 221 47 3 chr12 3374794 3375116 -140907373 - MER58B DNA MER1_type -4 337 2 277 289 56 106 chr12 3375116 3375175 -140907314 + L2 LINE L2 3212 3272 0 2209 113 27 0 chr12 3375272 3375565 -140906924 + AluSx SINE Alu 1 301 -11 3003 173 25 48 chr12 3375611 3376170 -140906319 - L1MB8 LINE L1 -10 6168 5627 1555 171 60 26 chr12 3376170 3376522 -140905967 - MLT1A1 LTR MaLR -1 364 1 3003 173 25 48 chr12 3376522 3376673 -140905816 - L1MB8 LINE L1 -551 5627 5474 433 290 34 111 chr12 3376930 3377192 -140905297 + MIR SINE MIR 9 250 -12 244 322 185 15 chr12 3377402 3377607 -140904882 - L3 LINE CR1 -223 1354 1115 455 293 105 6 chr12 3378710 3378891 -140903598 + MIR SINE MIR 45 243 -19 2416 93 7 0 chr12 3378967 3379277 -140903212 - AluSx SINE Alu 0 312 1 325 276 60 35 chr12 3380011 3380127 -140902362 - MIR SINE MIR -124 138 20 294 310 44 6 chr12 3380594 3380752 -140901737 + MIR3 SINE MIR 21 184 -24 325 274 85 13 chr12 3381671 3381824 -140900665 + MIR3 SINE MIR 23 186 -22 310 298 122 50 chr12 3381830 3381964 -140900525 - MIR SINE MIR -2 260 137 380 260 133 84 chr12 3381964 3382069 -140900420 + MER102b DNA MER1_type 3 101 -1327 2042 145 0 55 chr12 3382069 3382394 -140900095 - AluJb SINE Alu -5 307 1 380 260 133 84 chr12 3382394 3382611 -140899878 + MER102b DNA MER1_type 101 341 0 310 298 122 50 chr12 3382611 3382714 -140899775 - MIR SINE MIR -125 137 6 2316 54 54 0 chr12 3382771 3383048 -140899441 + AluY SINE Alu 1 292 -19 725 191 253 18 chr12 3383049 3383274 -140899215 - AluSg1 SINE Alu -30 279 2 512 281 41 12 chr12 3384357 3384528 -140897961 - MIR SINE MIR -3 259 84 425 272 44 34 chr12 3385061 3385149 -140897340 + L1ME4a LINE L1 5698 5784 -337 1966 94 87 11 chr12 3385149 3385426 -140897063 - AluSp SINE Alu -15 298 1 425 272 44 34 chr12 3385426 3385492 -140896997 + L1ME4a LINE L1 5784 5857 -264 1972 159 0 16 chr12 3385492 3385800 -140896689 + AluJo SINE Alu 1 303 -9 425 272 44 34 chr12 3385800 3385850 -140896639 + L1ME4a LINE L1 5857 5905 -216 329 256 128 17 chr12 3385868 3385985 -140896504 + L1ME4a LINE L1 5964 6093 -28 23 0 0 0 chr12 3386205 3386228 -140896261 + AT_rich Low_complexity Low_complexity 1 23 0 426 266 179 6 chr12 3386751 3386924 -140895565 + MIR SINE MIR 11 213 -49 1370 151 18 109 chr12 3386944 3387272 -140895217 - Tigger3b DNA MER2_type 0 1231 935 667 106 0 53 chr12 3387272 3387343 -140895146 - MSTA LTR MaLR 0 428 364 1630 158 102 11 chr12 3387343 3387628 -140894861 + AluJo SINE Alu 1 311 -1 667 106 0 53 chr12 3387628 3387669 -140894820 - MSTA LTR MaLR -64 364 322 591 141 11 0 chr12 3387679 3387771 -140894718 - FLAM_A SINE Alu -30 112 20 29 0 0 0 chr12 3387804 3387833 -140894656 + AT_rich Low_complexity Low_complexity 1 29 0 856 96 43 0 chr12 3387835 3387950 -140894539 + FLAM_C SINE Alu 1 120 -23 1264 118 50 57 chr12 3387950 3388077 -140894412 - Tigger3b DNA MER2_type -2565 463 337 2478 71 0 0 chr12 3388077 3388371 -140894118 - AluY SINE Alu -17 294 1 1264 118 50 57 chr12 3388371 3388505 -140893984 - Tigger3b DNA MER2_type -2691 337 204 592 149 0 47 chr12 3388515 3388622 -140893867 - FLAM_A SINE Alu -21 121 20 1136 191 15 0 chr12 3388648 3388847 -140893642 - Tigger3b DNA MER2_type -1026 205 4 730 142 18 0 chr12 3389161 3389274 -140893215 + FLAM_A SINE Alu 1 115 -18 2255 159 49 2 chr12 3389477 3389923 -140892566 - L1MB3 LINE L1 -2 6181 5715 729 329 29 0 chr12 3390189 3390435 -140892054 + MIR SINE MIR 4 256 -6 671 266 22 5 chr12 3391315 3391499 -140890990 + MIR SINE MIR 73 259 -3 309 287 167 6 chr12 3391859 3392033 -140890456 - MIR SINE MIR -6 256 55 441 313 60 20 chr12 3392120 3392321 -140890168 + MIR SINE MIR 53 261 -1 3808 178 30 14 chr12 3392476 3393248 -140889241 - L1MB5 LINE L1 0 6174 5391 204 383 57 19 chr12 3393252 3393461 -140889028 - L3 LINE CR1 -375 1202 986 22 0 0 0 chr12 3394092 3394114 -140888375 + AT_rich Low_complexity Low_complexity 1 22 0 219 280 187 0 chr12 3394646 3394721 -140887768 + MIR SINE MIR 94 182 -80 418 276 115 29 chr12 3395058 3395232 -140887257 - MIR3 SINE MIR 0 208 20 1708 156 0 11 chr12 3395819 3396102 -140886387 - AluJo SINE Alu -32 280 1 210 179 0 54 chr12 3396975 3397031 -140885458 - MIR SINE MIR -182 80 28 298 282 29 10 chr12 3397118 3397221 -140885268 - MIR SINE MIR -55 207 103 200 250 36 12 chr12 3398691 3398775 -140883714 + MIR SINE MIR 39 124 -84 1203 144 24 124 chr12 3399178 3399476 -140883013 - AluJb SINE Alu -10 302 35 1655 145 81 7 chr12 3400281 3400564 -140881925 - AluJb SINE Alu -8 304 1 203 195 24 0 chr12 3400840 3400881 -140881608 + MER5C DNA MER1_type 4 45 -279 383 258 172 8 chr12 3402727 3402855 -140879634 - MIR SINE MIR -33 229 81 3570 189 38 136 chr12 3403481 3404797 -140877692 - L1MC4a LINE L1 -87 7721 6545 248 0 31 0 chr12 3404798 3404830 -140877659 + (TTTA)n Simple_repeat Simple_repeat 2 34 0 1972 116 14 0 chr12 3404833 3405117 -140877372 - AluSx SINE Alu -24 288 1 771 268 91 25 chr12 3405142 3405385 -140877104 + MLT1C LTR MaLR 200 458 -9 464 261 29 7 chr12 3406762 3406900 -140875589 + MIR3 SINE MIR 65 205 -3 309 257 0 73 chr12 3407184 3407293 -140875196 - L2 LINE L2 -58 3255 3155 431 305 79 6 chr12 3407593 3407757 -140874732 + MIR SINE MIR 31 206 -56 813 238 11 32 chr12 3408296 3408485 -140874004 + MER3 DNA MER1_type 23 207 -2 306 235 29 0 chr12 3408871 3408939 -140873550 - MIR3 SINE MIR -24 184 115 481 295 8 14 chr12 3410424 3410592 -140871897 + MER5A DNA MER1_type 1 179 -10 357 336 69 23 chr12 3410684 3410901 -140871588 - L2 LINE L2 0 3272 3046 254 231 0 0 chr12 3411006 3411058 -140871431 - MIR SINE MIR -84 124 73 277 279 0 0 chr12 3411869 3411937 -140870552 + (TG)n Simple_repeat Simple_repeat 1 68 0 1181 85 0 0 chr12 3412503 3412656 -140869833 + AluSg/x SINE Alu 147 299 -13 2190 108 0 7 chr12 3413297 3413604 -140868885 - AluSx SINE Alu -7 305 1 189 0 0 0 chr12 3413784 3413805 -140868684 + (TGG)n Simple_repeat Simple_repeat 3 23 0 210 203 0 34 chr12 3414409 3414468 -140868021 + (TCTG)n Simple_repeat Simple_repeat 2 58 0 216 67 0 0 chr12 3414563 3414593 -140867896 + (TG)n Simple_repeat Simple_repeat 1 30 0 291 28 0 0 chr12 3414727 3414763 -140867726 + (TG)n Simple_repeat Simple_repeat 1 36 0 183 156 0 0 chr12 3415289 3415321 -140867168 + CT-rich Low_complexity Low_complexity 1 32 0 644 280 18 0 chr12 3415739 3415907 -140866582 - Charlie8 DNA MER1_type -2246 171 1 875 196 31 18 chr12 3416169 3416332 -140866157 + FRAM SINE Alu 1 165 -11 2144 108 0 19 chr12 3417210 3417524 -140864965 - AluSx SINE Alu -4 308 1 2357 60 0 7 chr12 3417819 3418117 -140864372 - AluY SINE Alu -15 296 1 398 283 215 16 chr12 3418132 3418323 -140864166 + MIR SINE MIR 18 246 -16 222 315 111 9 chr12 3418350 3418458 -140864031 - MIR SINE MIR -70 138 20 2285 89 0 0 chr12 3419169 3419460 -140863029 + AluSg SINE Alu 12 302 -8 518 246 42 36 chr12 3419904 3420071 -140862418 + MIR3 SINE MIR 5 172 -36 1966 135 47 75 chr12 3420137 3420301 -140862188 + MLT1B LTR MaLR 1 168 -222 710 203 0 0 chr12 3420301 3420429 -140862060 + FLAM_C SINE Alu 1 128 -5 1966 135 47 75 chr12 3420429 3420665 -140861824 + MLT1B LTR MaLR 168 390 0 3905 152 47 46 chr12 3420676 3421654 -140860835 - L1MB8 LINE L1 -50 6128 5159 2142 95 3 7 chr12 3421654 3421949 -140860540 + AluSp SINE Alu 1 294 -19 3905 152 47 46 chr12 3421949 3422206 -140860283 - L1MB8 LINE L1 -1019 5159 4904 2093 132 80 66 chr12 3422446 3422489 -140860000 + MSTB1 LTR MaLR 1 42 -390 426 39 0 0 chr12 3422489 3422541 -140859948 + (TCTA)n Simple_repeat Simple_repeat 2 53 0 817 204 7 7 chr12 3422542 3422694 -140859795 - FRAM SINE Alu -12 154 3 2093 132 80 66 chr12 3422694 3423074 -140859415 + MSTB1 LTR MaLR 41 432 0 248 244 179 0 chr12 3423813 3423891 -140858598 + L2 LINE L2 3222 3313 0 206 333 0 0 chr12 3425070 3425124 -140857365 + L2 LINE L2 3219 3272 0 358 338 14 0 chr12 3425381 3425529 -140856960 - MER117 DNA MER1_type -27 170 21 341 286 184 24 chr12 3425546 3425714 -140856775 + MIR3 SINE MIR 14 208 0 222 171 0 0 chr12 3426297 3426338 -140856151 - MIR SINE MIR -113 149 109 251 241 63 0 chr12 3427104 3427183 -140855306 - MIR3 SINE MIR 0 208 125 1102 244 74 36 chr12 3427291 3427501 -140854988 - L1ME3A LINE L1 -1 6169 5938 2376 90 0 0 chr12 3427501 3427813 -140854676 - AluSx SINE Alu 0 312 1 1102 244 74 36 chr12 3427813 3427967 -140854522 - L1ME3A LINE L1 -232 5938 5791 247 145 177 16 chr12 3427942 3428004 -140854485 - L1P2 LINE L1 -692 5463 5392 * 308 305 58 58 chr12 3430107 3430281 -140852208 + MIR SINE MIR 48 221 -41 569 231 137 40 chr12 3430675 3430916 -140851573 + MIR SINE MIR 3 257 -5 189 313 90 0 chr12 3431626 3431693 -140850796 + L2 LINE L2 2303 2375 -939 271 333 16 32 chr12 3431714 3431837 -140850652 + L2 LINE L2 2539 2659 -655 407 262 100 57 chr12 3431847 3432076 -140850413 + L2 LINE L2 3041 3279 -34 204 359 66 0 chr12 3433992 3434159 -140848330 + L2 LINE L2 2873 3050 -222 1401 169 64 14 chr12 3434215 3434510 -140847979 - AluJo SINE Alu -2 310 1 208 227 23 0 chr12 3434529 3434573 -140847916 + CT-rich Low_complexity Low_complexity 1 45 0 269 272 22 88 chr12 3434736 3434792 -140847697 + MIR3 SINE MIR 78 136 -72 1854 144 28 0 chr12 3434792 3435083 -140847406 - AluJo SINE Alu -13 299 1 269 272 22 88 chr12 3435083 3435162 -140847327 + MIR3 SINE MIR 136 204 -4 2558 39 0 0 chr12 3435290 3435598 -140846891 - AluY SINE Alu -3 308 1 203 216 20 0 chr12 3436843 3436894 -140845595 - L2 LINE L2 -31 3241 3190 23 0 0 0 chr12 3437811 3437834 -140844655 + AT_rich Low_complexity Low_complexity 1 23 0 2190 90 0 0 chr12 3437865 3438153 -140844336 - AluY SINE Alu -23 288 1 1996 132 0 0 chr12 3438160 3438449 -140844040 - AluSx SINE Alu -23 289 1 2184 104 0 10 chr12 3438998 3439307 -140843182 - AluSq SINE Alu -7 306 1 212 280 0 0 chr12 3439330 3439380 -140843109 + L2 LINE L2 3252 3301 -12 258 314 204 0 chr12 3440053 3440225 -140842264 - L3b LINE CR1 -154 1429 1223 573 258 96 40 chr12 3440829 3440951 -140841538 + MER112 DNA MER1_type 52 191 -69 1313 196 154 0 chr12 3440951 3441211 -140841278 + AluJo SINE Alu 1 300 -2 573 258 96 40 chr12 3441211 3441286 -140841203 + MER112 DNA MER1_type 191 260 0 182 240 20 0 chr12 3441614 3441664 -140840825 - L2 LINE L2 -20 3252 3202 381 318 94 5 chr12 3441683 3441906 -140840583 + L3 LINE CR1 1081 1323 -254 288 274 130 13 chr12 3442013 3442172 -140840317 - MIR SINE MIR -65 143 20 370 306 139 6 chr12 3442315 3442488 -140840001 - MIR SINE MIR -65 197 2 246 295 80 36 chr12 3443250 3443362 -140839127 - L2 LINE L2 0 3313 3197 378 345 63 11 chr12 3444278 3444452 -140838037 - MER5A DNA MER1_type 0 189 7 216 265 169 36 chr12 3444480 3444563 -140837926 + MIR SINE MIR 20 113 -95 1852 156 16 25 chr12 3444827 3445141 -140837348 + AluJb SINE Alu 1 311 -1 242 160 20 0 chr12 3445141 3445191 -140837298 + GA-rich Low_complexity Low_complexity 1 51 0 273 231 15 15 chr12 3445852 3445917 -140836572 - L2 LINE L2 -2 3311 3247 238 284 99 0 chr12 3446940 3447021 -140835468 - L2 LINE L2 0 3313 3225 * 734 263 232 3 chr12 3447009 3447259 -140835230 - L2 LINE L2 -189 3124 2932 282 29 0 0 chr12 3447259 3447294 -140835195 + (TG)n Simple_repeat Simple_repeat 2 36 0 734 263 232 3 chr12 3447294 3447410 -140835079 - L2 LINE L2 -381 2932 2686 667 239 133 16 chr12 3447626 3447814 -140834675 - MER63A DNA MER1_type 0 210 1 338 260 120 0 chr12 3448224 3448324 -140834165 + MIR SINE MIR 34 145 -63 197 118 0 0 chr12 3448907 3448941 -140833548 - MIR SINE MIR -113 149 116 234 0 0 0 chr12 3448947 3448973 -140833516 + (TTCA)n Simple_repeat Simple_repeat 1 26 0 192 335 155 59 chr12 3449732 3450022 -140832467 - L2 LINE L2 -95 3177 2860 358 332 144 34 chr12 3451553 3451936 -140830553 - L2 LINE L2 0 3272 2848 327 277 134 8 chr12 3452152 3452271 -140830218 - MIR3 SINE MIR -3 205 72 605 307 131 65 chr12 3452384 3453515 -140828974 - L2 LINE L2 -3 3310 2127 300 321 49 56 chr12 3453734 3453896 -140828593 - MIR SINE MIR -96 166 6 229 265 0 0 chr12 3454541 3454590 -140827899 + (TCCA)n Simple_repeat Simple_repeat 4 52 0 219 265 162 0 chr12 3454591 3454659 -140827830 - L2 LINE L2 -42 3271 3193 239 359 39 31 chr12 3454845 3454973 -140827516 - L2 LINE L2 -16 3256 3128 1971 162 3 0 chr12 3455100 3455403 -140827086 - AluJb SINE Alu -8 304 1 399 211 0 11 chr12 3457199 3457289 -140825200 + MIR SINE MIR 120 208 -54 483 288 25 16 chr12 3457760 3457945 -140824544 - MIR SINE MIR -44 218 30 342 155 0 82 chr12 3458416 3458610 -140823879 + (CACAG)n Simple_repeat Simple_repeat 3 180 0 451 162 0 104 chr12 3458658 3459058 -140823431 + (CCA)n Simple_repeat Simple_repeat 1 358 0 447 172 0 63 chr12 3458803 3459613 -140822876 + (CACAG)n Simple_repeat Simple_repeat 1 759 0 * 270 301 49 41 chr12 3459748 3459871 -140822618 + L2 LINE L2 3138 3261 -11 292 274 88 35 chr12 3459918 3460031 -140822458 - L2 LINE L2 0 3272 3154 21 36 0 0 chr12 3461535 3461563 -140820926 + GC_rich Low_complexity Low_complexity 1 28 0 370 283 42 0 chr12 3463201 3463321 -140819168 + MIR3 SINE MIR 42 166 -42 234 176 14 95 chr12 3463954 3464028 -140818461 + L2 LINE L2 3246 3313 0 221 208 0 21 chr12 3466949 3466997 -140815492 - L2 LINE L2 0 3313 3267 183 42 0 0 chr12 3467296 3467320 -140815169 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 544 339 60 3 chr12 3469590 3469672 -140812817 - L1ME3A LINE L1 -209 5961 5885 2331 97 0 0 chr12 3469672 3469980 -140812509 + AluSg SINE Alu 2 309 -1 544 339 60 3 chr12 3469980 3470195 -140812294 - L1ME3A LINE L1 -285 5885 5647 220 222 37 0 chr12 3470195 3470249 -140812240 - MER5C DNA MER1_type -2 322 267 2667 36 0 0 chr12 3470394 3470703 -140811786 + AluY SINE Alu 1 309 -2 1304 65 12 0 chr12 3470703 3470873 -140811616 + AluY SINE Alu 133 304 -7 517 283 105 61 chr12 3470917 3471453 -140811036 - L1ME3A LINE L1 -674 5659 5148 1967 152 0 7 chr12 3471453 3471762 -140810727 - AluJo SINE Alu -5 307 1 517 283 105 61 chr12 3471762 3472311 -140810178 - L1ME3A LINE L1 -1185 5148 4549 2113 134 0 0 chr12 3472679 3472986 -140809503 - AluSg SINE Alu -3 307 1 465 226 140 12 chr12 3472991 3473155 -140809334 - L1ME3A LINE L1 -1555 4591 4407 801 153 30 0 chr12 3473158 3473289 -140809200 - AluJo SINE Alu -177 135 1 866 236 10 10 chr12 3474709 3474908 -140807581 + MIR3 SINE MIR 5 203 -5 323 414 53 10 chr12 3478526 3478734 -140803755 + MIR SINE MIR 23 239 -23 1412 62 42 10 chr12 3480388 3480580 -140801909 + L1PA7 LINE L1 5957 6154 0 2135 103 34 0 chr12 3480589 3480880 -140801609 + AluSq SINE Alu 1 301 -12 186 86 0 86 chr12 3481003 3481038 -140801451 - MIR SINE MIR -220 42 11 2175 124 0 3 chr12 3482069 3482375 -140800114 - AluSx SINE Alu -7 305 1 1748 163 51 0 chr12 3482382 3482658 -140799831 - AluJo SINE Alu -22 290 1 267 323 30 20 chr12 3482845 3482944 -140799545 - L2 LINE L2 -4 3268 3169 214 309 60 48 chr12 3484360 3484444 -140798045 + MIR SINE MIR 108 192 -70 573 263 13 13 chr12 3484571 3484727 -140797762 - MER5B DNA MER1_type -13 165 10 199 354 62 26 chr12 3484828 3484941 -140797548 - L3b LINE CR1 -198 1385 1269 347 342 37 43 chr12 3485089 3485276 -140797213 - MIR3 SINE MIR -7 201 16 600 123 0 0 chr12 3487277 3487358 -140795131 + FLAM_A SINE Alu 44 124 -18 774 32 0 0 chr12 3487369 3487462 -140795027 + (TG)n Simple_repeat Simple_repeat 2 94 0 332 281 0 0 chr12 3487462 3487526 -140794963 - L1MC4 LINE L1 -1341 6701 6638 519 202 0 0 chr12 3487530 3487614 -140794875 - FRAM/FAM SINE Alu -93 83 1 495 279 127 33 chr12 3488709 3488783 -140793706 - MIR SINE MIR -6 256 190 1729 164 0 50 chr12 3488783 3489100 -140793389 + AluJo SINE Alu 1 301 -11 495 279 127 33 chr12 3489100 3489254 -140793235 - MIR SINE MIR -72 190 15 1150 204 109 48 chr12 3489443 3489883 -140792606 - MLT1C LTR MaLR 0 467 1 23 0 0 0 chr12 3491817 3491840 -140790649 + AT_rich Low_complexity Low_complexity 1 23 0 274 271 112 9 chr12 3491928 3492035 -140790454 + MIR SINE MIR 20 137 -71 374 314 52 7 chr12 3493267 3493420 -140789069 - MER5B DNA MER1_type -2 176 17 234 339 57 24 chr12 3493505 3493739 -140788750 - L3 LINE CR1 -106 1471 1190 377 294 12 12 chr12 3494212 3494375 -140788114 - L1ME3A LINE L1 -220 5950 5788 287 285 46 46 chr12 3494379 3494509 -140787980 - L1ME3A LINE L1 -423 5739 5610 194 265 0 82 chr12 3495095 3495193 -140787296 + L2 LINE L2 3205 3294 -19 2345 51 0 69 chr12 3495595 3495929 -140786560 + AluY SINE Alu 1 311 0 492 18 0 0 chr12 3495934 3495991 -140786498 + (TA)n Simple_repeat Simple_repeat 2 58 0 489 303 82 26 chr12 3496048 3496243 -140786246 + MIR SINE MIR 1 206 -56 519 346 13 34 chr12 3496832 3497069 -140785420 + MIR SINE MIR 15 246 -16 * 725 286 95 9 chr12 3497006 3497237 -140785252 - MIR SINE MIR 0 262 12 220 336 89 59 chr12 3497581 3497852 -140784637 - L2 LINE L2 -21 3251 2973 228 217 22 0 chr12 3498734 3498780 -140783709 + C-rich Low_complexity Low_complexity 1 47 0 338 292 84 8 chr12 3498853 3499005 -140783484 - MIR3 SINE MIR -62 146 4 211 288 62 12 chr12 3500372 3500452 -140782037 - MIR SINE MIR -101 107 24 442 305 64 11 chr12 3500759 3500946 -140781543 - L1MC5 LINE L1 -36 7925 7729 365 291 88 20 chr12 3501175 3501323 -140781166 - MIR SINE MIR -102 160 3 250 306 24 12 chr12 3501341 3501426 -140781063 - MIR SINE MIR -176 86 1 793 336 48 12 chr12 3501572 3501986 -140780503 + L1ME LINE L1 5355 5783 -338 336 341 61 12 chr12 3503118 3503282 -140779207 - MIR3 SINE MIR -36 172 1 201 306 32 0 chr12 3503436 3503498 -140778991 + MIR SINE MIR 58 121 -87 404 318 80 17 chr12 3503990 3504166 -140778323 - MIR SINE MIR -6 256 70 2180 149 96 15 chr12 3506680 3507076 -140775413 - MSTA LTR MaLR 0 428 1 183 351 108 18 chr12 3508044 3508155 -140774334 + L3b LINE CR1 1461 1581 -2 223 323 50 10 chr12 3509300 3509399 -140773090 - MIR SINE MIR -56 206 104 359 330 54 0 chr12 3510446 3510558 -140771931 - MIR SINE MIR -61 147 30 250 316 13 0 chr12 3511671 3511750 -140770739 + CT-rich Low_complexity Low_complexity 3 82 0 329 271 30 8 chr12 3512195 3512328 -140770161 - L1ME4a LINE L1 -5 6116 5981 538 234 86 25 chr12 3514057 3514254 -140768235 + MIR SINE MIR 34 242 -20 193 268 115 70 chr12 3514536 3514693 -140767796 + MER5A DNA MER1_type 3 166 -23 195 376 30 0 chr12 3514774 3514875 -140767614 + MIR SINE MIR 150 253 -9 352 381 22 0 chr12 3515301 3515440 -140767049 - MIR SINE MIR 0 262 121 291 300 44 0 chr12 3519810 3519900 -140762589 - MIR SINE MIR -92 170 77 431 296 379 4 chr12 3520138 3520713 -140761776 - L2 LINE L2 -2 3311 2498 316 311 57 0 chr12 3520737 3520843 -140761646 - L2 LINE L2 -935 2379 2268 190 309 160 11 chr12 3521260 3521354 -140761135 - L2 LINE L2 -5 3308 3201 637 239 49 117 chr12 3521928 3522192 -140760297 - MIR SINE MIR -2 260 15 188 227 114 0 chr12 3523618 3523662 -140758827 + MIR SINE MIR 84 132 -76 291 254 156 18 chr12 3523771 3523909 -140758580 + MIR SINE MIR 35 187 -65 431 321 45 0 chr12 3523912 3524046 -140758443 - MIR3 SINE MIR 0 208 69 470 322 103 14 chr12 3525435 3525649 -140756840 - MIR SINE MIR -1 261 29 330 298 124 8 chr12 3526553 3526674 -140755815 + MIR SINE MIR 49 183 -79 409 316 75 0 chr12 3526997 3527130 -140755359 + MIR SINE MIR 100 242 -20 211 329 106 29 chr12 3527982 3528152 -140754337 - MIR SINE MIR 0 262 80 232 46 32 208 chr12 3529958 3530174 -140752315 + (CCCTG)n Simple_repeat Simple_repeat 2 179 0 471 287 98 6 chr12 3531975 3532139 -140750350 + L3 LINE CR1 913 1091 -486 325 282 17 86 chr12 3532149 3532323 -140750166 + L3 LINE CR1 1291 1452 -125 323 95 5 0 chr12 3533229 3533289 -140749200 - Alu SINE Alu -265 43 1 228 268 14 14 chr12 3533879 3533950 -140748539 - L2 LINE L2 -40 3273 3203 1193 178 53 0 chr12 3534765 3534973 -140747516 - MER20 DNA MER1_type 0 219 1 286 238 107 0 chr12 3535023 3535107 -140747382 - MIR3 SINE MIR -32 176 84 289 309 41 0 chr12 3536671 3536768 -140745721 + L2 LINE L2 2504 2604 -710 1218 308 63 9 chr12 3536907 3537566 -140744923 + L2 LINE L2 2614 3311 -2 190 330 65 60 chr12 3537599 3537784 -140744705 + L2 LINE L2 3072 3257 -15 198 337 51 10 chr12 3537796 3537894 -140744595 - MIR SINE MIR -33 229 128 356 299 81 40 chr12 3538801 3538975 -140743514 - MIR SINE MIR -2 260 80 310 197 0 15 chr12 3540043 3540109 -140742380 + L3 LINE CR1 1397 1461 -116 284 286 20 10 chr12 3540524 3540622 -140741867 - MIR SINE MIR -16 246 148 224 307 29 21 chr12 3542205 3542345 -140740144 + (CTGGGG)n Simple_repeat Simple_repeat 2 142 0 1248 192 54 23 chr12 3543109 3543369 -140739120 - AluJo SINE Alu -11 301 34 478 342 114 22 chr12 3548864 3549541 -140732948 - L2 LINE L2 -14 3258 2473 368 343 122 9 chr12 3549825 3550038 -140732451 + MIR SINE MIR 20 256 -6 1979 166 8 45 chr12 3550835 3551120 -140731369 + MER47A DNA MER2_type 1 270 -2053 2349 78 0 0 chr12 3551120 3551415 -140731074 - AluY SINE Alu -16 295 1 1979 166 8 45 chr12 3551415 3551508 -140730981 + MER47A DNA MER2_type 270 365 -1 2202 97 10 3 chr12 3551952 3552262 -140730227 - AluSq SINE Alu -1 312 1 840 142 0 8 chr12 3554059 3554193 -140728296 + FLAM_C SINE Alu 1 133 -10 216 0 0 0 chr12 3554350 3554374 -140728115 + (CAGGG)n Simple_repeat Simple_repeat 1 24 0 621 184 155 30 chr12 3554545 3554713 -140727776 + MER5A DNA MER1_type 1 189 0 331 307 150 13 chr12 3555702 3555855 -140726634 + MIR SINE MIR 86 259 -3 1817 173 0 3 chr12 3557840 3558141 -140724348 + AluJb SINE Alu 1 300 -12 387 242 44 0 chr12 3559117 3559208 -140723281 - MER5A DNA MER1_type -94 95 1 243 256 13 26 chr12 3559275 3559353 -140723136 - MER5A DNA MER1_type -93 96 20 216 0 0 0 chr12 3562014 3562038 -140720451 + (T)n Simple_repeat Simple_repeat 1 24 0 477 312 91 9 chr12 3562081 3562312 -140720177 - MIR SINE MIR -12 250 1 318 285 49 41 chr12 3562493 3562616 -140719873 + MIR SINE MIR 69 192 -70 450 288 142 14 chr12 3562664 3562883 -140719606 - MIR SINE MIR -15 247 1 219 186 0 0 chr12 3563156 3563199 -140719290 + (CA)n Simple_repeat Simple_repeat 1 43 0 1474 159 69 0 chr12 3563216 3563492 -140718997 + MER2 DNA MER2_type 48 342 -3 531 92 0 0 chr12 3563496 3563583 -140718906 + (CA)n Simple_repeat Simple_repeat 2 88 0 368 294 10 0 chr12 3565701 3565803 -140716686 + MIR SINE MIR 128 230 -32 852 250 88 0 chr12 3566682 3566874 -140715615 + MER3 DNA MER1_type 1 209 0 513 279 101 6 chr12 3567287 3567466 -140715023 - MIR SINE MIR -41 221 26 620 303 100 77 chr12 3568758 3569197 -140713292 - L2 LINE L2 0 3272 2824 373 272 105 42 chr12 3570397 3570588 -140711901 - MER115 DNA AcHobo -490 203 1 191 220 51 17 chr12 3572168 3572227 -140710262 + L2 LINE L2 2907 2967 -346 1121 186 48 5 chr12 3572780 3572990 -140709499 + MER20 DNA MER1_type 1 219 0 625 300 18 66 chr12 3573890 3574163 -140708326 - MIR SINE MIR 0 262 3 235 309 47 40 chr12 3574759 3574908 -140707581 + L2 LINE L2 2898 3047 -225 694 161 23 31 chr12 3576602 3576732 -140705757 + FLAM_C SINE Alu 15 143 0 315 0 0 0 chr12 3576785 3576820 -140705669 + (TG)n Simple_repeat Simple_repeat 1 35 0 240 298 64 0 chr12 3579607 3579701 -140702788 + (CATG)n Simple_repeat Simple_repeat 3 102 0 218 317 0 0 chr12 3580378 3580438 -140702051 + L3 LINE CR1 1511 1570 -7 1202 228 96 8 chr12 3580915 3581270 -140701219 - MER88 LTR ERVL 0 464 79 304 340 62 7 chr12 3581328 3581472 -140701017 + MIR SINE MIR 83 234 -28 1010 209 78 76 chr12 3582939 3583361 -140699128 + L1MC5 LINE L1 7316 7738 -223 342 250 40 75 chr12 3583349 3583601 -140698888 + L1MC5 LINE L1 7668 7910 -51 * 603 222 6 11 chr12 3583646 3583822 -140698667 + GA-rich Low_complexity Low_complexity 5 179 0 537 289 115 9 chr12 3584282 3584500 -140697989 - MIR SINE MIR -12 250 10 332 279 175 25 chr12 3584623 3584825 -140697664 - MIR3 SINE MIR -31 231 3 375 294 17 100 chr12 3585503 3585683 -140696806 - MIR SINE MIR -50 212 48 733 214 40 23 chr12 3585860 3586033 -140696456 + MER104 DNA MER2_type 1 176 -4 385 311 19 0 chr12 3586181 3586287 -140696202 + MIR SINE MIR 43 150 -58 462 197 242 0 chr12 3586866 3586998 -140695491 + MER5B DNA MER1_type 15 178 0 595 295 6 22 chr12 3587733 3587916 -140694573 + MIR3 SINE MIR 1 180 -28 197 304 0 38 chr12 3588782 3588861 -140693628 + L2 LINE L2 2409 2484 -830 202 306 69 38 chr12 3588957 3589117 -140693372 + L2 LINE L2 2718 2882 -432 343 306 45 0 chr12 3589177 3589288 -140693201 + MIR SINE MIR 6 121 -141 291 329 85 53 chr12 3589812 3590058 -140692431 - L2 LINE L2 -1 3271 3018 213 175 0 0 chr12 3590770 3590810 -140691679 + GA-rich Low_complexity Low_complexity 1 40 0 491 299 51 13 chr12 3590810 3590967 -140691522 - MIR3 SINE MIR -29 179 17 2610 79 56 0 chr12 3591147 3591502 -140690987 + THE1C LTR MaLR 1 375 0 397 212 62 0 chr12 3592330 3592443 -140690046 - MER112 DNA MER1_type -8 252 133 1993 167 29 31 chr12 3592444 3593000 -140689489 - MLT2A2 LTR ERVL 0 554 1 386 313 154 39 chr12 3593161 3593311 -140689178 - MIR SINE MIR -1 261 73 1353 208 80 55 chr12 3593311 3593676 -140688813 - MLT1A2 LTR MaLR 0 374 1 386 313 154 39 chr12 3593676 3593758 -140688731 - MIR SINE MIR -189 73 2 304 297 99 0 chr12 3593996 3594107 -140688382 + L2 LINE L2 3188 3309 -4 282 280 102 8 chr12 3594126 3594244 -140688245 + MIR SINE MIR 25 153 -109 500 196 11 0 chr12 3595312 3595404 -140687085 - MER81 DNA DNA -21 93 1 606 333 135 8 chr12 3595462 3595930 -140686559 + L2 LINE L2 2100 2626 -688 227 285 39 54 chr12 3595935 3595969 -140686520 + L1ME4a LINE L1 5992 6025 -96 1843 227 44 24 chr12 3595969 3596427 -140686062 + MLT1C LTR MaLR 1 467 0 227 285 39 54 chr12 3596427 3596522 -140685967 + L1ME4a LINE L1 6025 6119 -2 1016 211 123 55 chr12 3596616 3597035 -140685454 + MER110A LTR ERV1 67 491 0 270 305 144 0 chr12 3597068 3597186 -140685303 - MIR SINE MIR -112 150 16 226 147 0 0 chr12 3597320 3597354 -140685135 + MER54A LTR ERVL 532 565 -336 240 35 0 0 chr12 3598289 3598318 -140684171 + (TC)n Simple_repeat Simple_repeat 1 29 0 183 200 50 0 chr12 3598460 3598500 -140683989 - MIR SINE MIR -58 150 109 943 206 83 13 chr12 3598525 3598753 -140683736 + MIR SINE MIR 19 262 0 281 210 62 62 chr12 3599839 3599920 -140682569 - MIR3 SINE MIR -5 203 123 495 168 31 20 chr12 3600052 3600166 -140682323 + MIR SINE MIR 1 119 -89 793 260 72 13 chr12 3600171 3600406 -140682083 - MIR SINE MIR -11 251 3 662 274 29 20 chr12 3600532 3600736 -140681753 + MLT1J LTR MaLR 4 209 -302 776 325 6 0 chr12 3600736 3601074 -140681415 - L1M4 LINE L1 -3427 2719 2380 2323 88 0 20 chr12 3601101 3601398 -140681091 - AluSp SINE Alu -22 291 1 934 242 30 30 chr12 3601399 3601663 -140680826 + MLT1J LTR MaLR 199 462 -49 183 232 24 61 chr12 3603399 3603481 -140679008 + MIR SINE MIR 59 137 -125 617 205 108 30 chr12 3603489 3603617 -140678872 - MER5A DNA MER1_type 0 189 44 418 227 27 36 chr12 3603617 3603727 -140678762 + MER81 DNA DNA 2 110 -4 617 205 108 30 chr12 3603727 3603764 -140678725 - MER5A DNA MER1_type -145 44 11 236 100 0 50 chr12 3603769 3603809 -140678680 + L3 LINE CR1 1532 1569 -8 371 285 78 90 chr12 3604460 3604870 -140677619 - L2 LINE L2 -1 3271 2867 186 43 0 0 chr12 3605058 3605081 -140677408 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 1521 150 8 0 chr12 3605082 3605335 -140677154 - L1MA8 LINE L1 -402 5889 5635 1319 118 78 96 chr12 3605339 3605568 -140676921 + L1MA8 LINE L1 5867 6098 -214 1561 71 66 0 chr12 3605568 3605780 -140676709 - L1PA6 LINE L1 -5 6149 5924 2552 60 0 13 chr12 3605785 3606086 -140676403 - AluY SINE Alu -7 304 8 1319 118 78 96 chr12 3606086 3606146 -140676343 + L1MA8 LINE L1 6102 6162 -150 363 22 0 0 chr12 3606146 3606192 -140676297 - MADE1 DNA Mariner 0 80 35 1319 118 78 96 chr12 3606192 3606298 -140676191 + L1MA8 LINE L1 6162 6289 -23 247 215 129 21 chr12 3606782 3606875 -140675614 - MIR SINE MIR -86 122 20 507 268 56 0 chr12 3606907 3607049 -140675440 - MIR SINE MIR -1 261 112 1131 83 0 0 chr12 3607419 3607575 -140674914 + (TTCC)n Simple_repeat Simple_repeat 1 156 0 1893 135 0 0 chr12 3607583 3607843 -140674646 - AluSx SINE Alu -52 260 1 453 269 27 54 chr12 3608335 3608484 -140674005 + MIR SINE MIR 48 192 -70 183 278 37 0 chr12 3609148 3609202 -140673287 + MIR SINE MIR 42 97 -111 415 212 59 34 chr12 3609364 3609386 -140673103 - MIR SINE MIR -32 230 210 1387 184 34 13 chr12 3609386 3609620 -140672869 + MER8 DNA MER2_type 1 239 0 415 212 59 34 chr12 3609620 3609715 -140672774 - MIR SINE MIR -52 210 110 265 257 40 0 chr12 3609717 3609791 -140672698 - MER94 DNA DNA -33 101 25 263 278 56 0 chr12 3610907 3610979 -140671510 - MIR SINE MIR -70 192 117 437 240 48 10 chr12 3611308 3611412 -140671077 + MER91C DNA MER1_type 31 138 -2 599 263 78 10 chr12 3611793 3611986 -140670503 + MLT1J LTR MaLR 2 175 -275 859 213 41 0 chr12 3612092 3612261 -140670228 - MER5A DNA MER1_type -1 188 13 381 191 77 101 chr12 3612261 3612429 -140670060 + MLT1J LTR MaLR 312 475 -36 204 333 141 15 chr12 3613511 3613646 -140668843 - L2 LINE L2 0 3272 3121 388 212 80 80 chr12 3614615 3614766 -140667723 + MIR3 SINE MIR 3 153 -55 203 312 39 39 chr12 3615071 3615148 -140667341 - MIR3 SINE MIR -2 206 130 316 113 0 0 chr12 3615201 3615254 -140667235 - L1MB4 LINE L1 -1 6179 6127 190 286 65 26 chr12 3616055 3616132 -140666357 + MIR SINE MIR 68 147 -115 199 171 24 146 chr12 3616832 3616914 -140665575 - MIR3 SINE MIR -132 76 5 273 259 133 49 chr12 3617479 3617622 -140664867 - MIR3 SINE MIR -30 178 24 823 262 59 5 chr12 3618152 3618373 -140664116 + MIR SINE MIR 30 262 0 204 146 122 0 chr12 3618764 3618805 -140663684 + MIR SINE MIR 96 141 -67 781 146 129 23 chr12 3618956 3619127 -140663362 - MER5A DNA MER1_type 0 189 1 413 295 29 0 chr12 3619139 3619244 -140663245 + MER5B DNA MER1_type 8 115 -63 672 173 36 36 chr12 3619312 3619480 -140663009 - MER58C DNA MER1_type -1 214 47 2491 213 45 12 chr12 3620466 3621043 -140661446 + MER45B DNA AcHobo 1 596 -444 1031 152 35 23 chr12 3621060 3621231 -140661258 + AluJb SINE Alu 131 303 -9 841 164 0 0 chr12 3621527 3621655 -140660834 - FLAM_C SINE Alu -5 128 1 415 311 26 1 chr12 3622417 3622572 -140659917 - MIR SINE MIR -39 169 3 2521 58 7 10 chr12 3623083 3623392 -140659097 + AluY SINE Alu 1 308 -3 600 287 164 15 chr12 3624316 3624584 -140657905 - L2 LINE L2 -1 3312 3005 266 287 49 33 chr12 3624599 3624721 -140657768 - MIR SINE MIR -62 146 23 1233 131 0 0 chr12 3624773 3624941 -140657548 + AluSq SINE Alu 1 168 -145 195 42 0 0 chr12 3625044 3625068 -140657421 + (TCCCC)n Simple_repeat Simple_repeat 3 26 0 241 291 82 68 chr12 3625571 3625777 -140656712 - MIR SINE MIR -42 220 12 22 56 0 0 chr12 3626711 3626747 -140655742 + GC_rich Low_complexity Low_complexity 1 36 0 345 284 18 0 chr12 3628456 3628565 -140653924 + LTR16A LTR ERVL 239 349 -101 259 191 15 73 chr12 3628750 3628818 -140653671 + LTR16A LTR ERVL 382 445 -5 1083 204 24 67 chr12 3629342 3629715 -140652774 - Charlie5 DNA MER1_type -22 2590 2234 527 248 0 16 chr12 3629718 3629843 -140652646 - MER3 DNA MER1_type -47 162 40 201 237 0 0 chr12 3630279 3630317 -140652172 + MIR SINE MIR 113 150 -58 315 0 0 0 chr12 3630752 3630787 -140651702 + (CA)n Simple_repeat Simple_repeat 1 35 0 282 146 42 0 chr12 3631203 3631251 -140651238 - AluJ/FLAM SINE Alu -240 62 13 420 167 0 0 chr12 3631257 3631329 -140651160 + FLAM SINE Alu 53 124 -19 282 73 0 0 chr12 3631341 3631382 -140651107 + (TAAAA)n Simple_repeat Simple_repeat 5 45 0 341 291 26 51 chr12 3632256 3632373 -140650116 - HAL1b LINE L1 -13 1335 1222 294 291 91 43 chr12 3632406 3632660 -140649829 - L1ME4a LINE L1 -225 5896 5631 196 169 17 34 chr12 3632698 3632757 -140649732 + (CATA)n Simple_repeat Simple_repeat 4 61 0 759 299 66 71 chr12 3633055 3633507 -140648982 + L1MEc LINE L1 2061 2510 -3886 1245 150 75 66 chr12 3633609 3633929 -140648560 + MER33 DNA MER1_type 2 324 0 713 209 20 0 chr12 3635178 3635326 -140647163 + MER45A DNA AcHobo 28 178 0 306 0 0 0 chr12 3635498 3635532 -140646957 + (TGG)n Simple_repeat Simple_repeat 1 34 0 344 352 39 66 chr12 3635596 3635852 -140646637 + L2 LINE L2 2835 3083 -189 437 376 73 6 chr12 3636408 3636573 -140645916 + MER91A DNA MER1_type 16 191 -5 304 304 123 0 chr12 3637137 3637275 -140645214 - MIR3 SINE MIR -7 201 47 2177 94 31 22 chr12 3637371 3637690 -140644799 + THE1B LTR MaLR 1 322 -42 580 216 153 51 chr12 3638410 3638665 -140643824 + L2 LINE L2 3030 3310 -3 673 70 0 0 chr12 3638667 3638779 -140643710 + L1PA10 LINE L1 6060 6171 0 329 277 50 10 chr12 3639176 3639277 -140643212 - MER91C DNA MER1_type -35 105 1 918 279 60 53 chr12 3639351 3640031 -140642458 + L2 LINE L2 2630 3313 0 264 365 83 6 chr12 3640439 3640595 -140641894 + MIR SINE MIR 33 200 -62 5049 199 32 23 chr12 3642363 3644139 -140638350 - L1MD1 LINE L1 -2 6240 4455 1910 147 68 34 chr12 3644139 3644492 -140637997 + MLT1A1 LTR MaLR 1 365 0 5049 199 32 23 chr12 3644492 3645082 -140637407 - L1MD1 LINE L1 -1787 4455 3872 440 289 39 19 chr12 3645122 3645278 -140637211 - MLT1L LTR MaLR -11 604 446 417 188 145 0 chr12 3645351 3645468 -140637021 - MLT1L LTR MaLR -314 301 168 519 238 19 0 chr12 3645537 3645642 -140636847 - MER20B DNA MER1_type -608 175 69 554 261 24 6 chr12 3645840 3646005 -140636484 - MIR SINE MIR -8 254 87 255 103 0 0 chr12 3646628 3646667 -140635822 + (TCCA)n Simple_repeat Simple_repeat 4 42 0 204 373 0 0 chr12 3647260 3647327 -140635162 + (TCCA)n Simple_repeat Simple_repeat 1 67 0 2368 98 10 0 chr12 3647418 3647724 -140634765 - AluSg SINE Alu -1 309 1 209 349 39 39 chr12 3647741 3647870 -140634619 + L2 LINE L2 3136 3264 -8 182 222 0 0 chr12 3648336 3648372 -140634117 - L2 LINE L2 -15 3298 3263 1882 237 55 101 chr12 3648398 3649271 -140633218 - L1MC4 LINE L1 0 8042 7210 732 208 42 21 chr12 3649278 3649470 -140633019 - MIR SINE MIR -64 198 3 403 250 27 0 chr12 3649926 3650038 -140632451 - MIR3 SINE MIR -41 167 53 186 43 0 0 chr12 3650176 3650199 -140632290 + (TTCC)n Simple_repeat Simple_repeat 2 24 0 247 294 56 24 chr12 3650208 3650334 -140632155 - L2 LINE L2 -1 3271 3142 631 253 34 11 chr12 3651240 3651418 -140631071 - MIR SINE MIR -69 193 12 350 264 33 33 chr12 3651515 3651636 -140630853 + L2 LINE L2 3148 3268 -4 642 279 140 17 chr12 3651842 3652380 -140630109 - L2 LINE L2 0 3313 2704 325 305 141 8 chr12 3652394 3652522 -140629967 + L2 LINE L2 3126 3270 -2 222 348 43 27 chr12 3652719 3652906 -140629583 - L2 LINE L2 -359 2955 2766 25 0 0 0 chr12 3652906 3652931 -140629558 + AT_rich Low_complexity Low_complexity 1 25 0 43926 32 23 1 chr12 3652931 3658950 -140623539 - L1PA3 LINE L1 -4 6151 1 285 237 64 103 chr12 3660673 3660734 -140621755 + L1ME LINE L1 5578 5640 -481 14380 134 15 2 chr12 3660734 3661581 -140620908 + L1PA11 LINE L1 2994 3828 -2346 2385 95 10 10 chr12 3661581 3661886 -140620603 + AluSp SINE Alu 1 305 -8 14380 134 15 2 chr12 3661886 3664209 -140618280 + L1PA11 LINE L1 3828 6174 0 285 237 64 103 chr12 3664209 3664303 -140618186 + L1ME LINE L1 5640 5727 -394 2311 98 10 0 chr12 3664318 3664615 -140617874 + AluSx SINE Alu 5 304 -8 266 247 93 10 chr12 3664705 3664802 -140617687 - L1MC4 LINE L1 -9 8033 7929 21 36 0 0 chr12 3664955 3664983 -140617506 + AT_rich Low_complexity Low_complexity 1 28 0 707 212 28 79 chr12 3665112 3665348 -140617141 - L1ME3A LINE L1 -33 6129 5911 895 271 48 11 chr12 3665351 3665724 -140616765 - L1M4 LINE L1 -3487 3680 3294 2740 97 14 3 chr12 3665730 3666101 -140616388 - THE1C LTR MaLR 0 375 1 9742 114 49 38 chr12 3666101 3667660 -140614829 - THE1C-int LTR MaLR 0 1580 4 2963 85 0 0 chr12 3667662 3668037 -140614452 - THE1C LTR MaLR 0 375 1 2913 174 14 86 chr12 3668037 3668829 -140613660 - L1M4 LINE L1 -4338 2830 2096 390 174 41 0 chr12 3668839 3668937 -140613552 + CT-rich Low_complexity Low_complexity 4 105 0 1566 217 0 10 chr12 3668945 3669249 -140613240 - AluJb SINE Alu -7 305 5 7016 200 40 21 chr12 3669249 3670696 -140611793 - L1M4 LINE L1 -5048 2120 646 2422 92 0 0 chr12 3671217 3671523 -140610966 - AluSg SINE Alu -4 306 1 991 183 213 39 chr12 3672287 3672648 -140609841 + MSTC LTR MaLR 1 424 -4 328 221 29 0 chr12 3672653 3672717 -140609772 - MER2 DNA MER2_type 0 345 280 4009 118 62 6 chr12 3672717 3673377 -140609112 - Tigger3(Golem) DNA MER2_type -1 3028 2332 647 149 79 0 chr12 3673380 3673494 -140608995 + THE1B LTR MaLR 1 123 -252 1077 98 0 0 chr12 3673497 3673629 -140608860 - AluSg SINE Alu -178 132 1 377 82 0 33 chr12 3673867 3673928 -140608561 - AluSq/x SINE Alu -163 139 81 * 1699 129 4 0 chr12 3673919 3674160 -140608329 + THE1B LTR MaLR 123 364 0 1133 113 0 0 chr12 3674160 3674319 -140608170 - Tigger3(Golem) DNA MER2_type -695 2334 2176 925 199 25 0 chr12 3674308 3674469 -140608020 - Tigger3(Golem) DNA MER2_type -2864 165 1 * 1290 131 29 5 chr12 3674508 3674714 -140607775 - MER2 DNA MER2_type -134 211 1 392 248 70 16 chr12 3674726 3674855 -140607634 + L1ME4a LINE L1 5969 6104 -17 487 138 99 138 chr12 3674966 3675118 -140607371 - MER21B LTR ERV1 -19 912 693 660 203 29 37 chr12 3675329 3675499 -140606990 - LTR1B LTR ERV1 -62 1216 332 428 263 134 12 chr12 3675550 3675731 -140606758 - LTR1 LTR ERV1 -568 217 48 3699 158 51 3 chr12 3675731 3676340 -140606149 - MER21B LTR ERV1 -225 638 1 404 214 101 44 chr12 3676439 3676598 -140605891 - MIR3 SINE MIR -23 185 18 941 251 22 4 chr12 3678596 3678823 -140603666 + MIR SINE MIR 32 262 0 276 292 45 0 chr12 3679859 3679948 -140602541 - MIR SINE MIR -78 130 38 553 139 19 0 chr12 3680673 3680781 -140601708 + GA-rich Low_complexity Low_complexity 1 110 0 380 163 0 81 chr12 3680995 3681081 -140601408 + MIR SINE MIR 73 151 -111 276 114 0 0 chr12 3682838 3682882 -140599607 + MIR SINE MIR 101 144 -64 1757 204 54 36 chr12 3683090 3683320 -140599169 - LTR2 LTR ERV1 0 449 206 228 67 0 0 chr12 3683320 3683350 -140599139 + (CAGAA)n Simple_repeat Simple_repeat 1 30 0 1757 204 54 36 chr12 3683350 3683560 -140598929 - LTR2 LTR ERV1 -243 206 1 33233 113 40 51 chr12 3683560 3690690 -140591799 - Harlequin LTR ERV1 0 6896 1 1982 192 66 27 chr12 3690690 3691132 -140591357 - LTR2B LTR ERV1 0 490 32 338 248 193 0 chr12 3691485 3691594 -140590895 - L2 LINE L2 0 3272 3143 381 321 137 18 chr12 3691735 3692012 -140590477 - L2 LINE L2 -439 2875 2566 253 320 120 16 chr12 3692267 3692576 -140589913 - L2 LINE L2 -1245 2069 1729 186 118 0 0 chr12 3693481 3693515 -140588974 + (TTTTG)n Simple_repeat Simple_repeat 1 34 0 515 320 65 7 chr12 3693670 3693945 -140588544 - L1ME LINE L1 -504 5660 5370 726 212 26 36 chr12 3694085 3694278 -140588211 - MIR SINE MIR -14 248 58 2198 98 28 0 chr12 3694334 3694620 -140587869 - AluSx SINE Alu -18 294 1 2335 109 0 0 chr12 3695673 3695985 -140586504 - AluSx SINE Alu 0 312 1 2400 93 3 0 chr12 3696226 3696536 -140585953 - AluY SINE Alu 0 311 1 182 37 37 0 chr12 3697185 3697212 -140585277 + (TTTC)n Simple_repeat Simple_repeat 2 29 0 344 340 19 31 chr12 3697901 3698063 -140584426 - L1MC4a LINE L1 -1879 5929 5770 1427 130 14 0 chr12 3698075 3698290 -140584199 - L1PA15 LINE L1 0 6165 5948 261 0 0 0 chr12 3698339 3698368 -140584121 + (TA)n Simple_repeat Simple_repeat 1 29 0 406 282 84 35 chr12 3698422 3698624 -140583865 + MIR SINE MIR 34 245 -17 277 294 101 25 chr12 3700668 3700787 -140581702 + MIR SINE MIR 17 144 -64 2155 86 0 14 chr12 3700895 3701175 -140581314 + AluSc SINE Alu 1 276 -33 275 0 29 0 chr12 3701175 3701210 -140581279 + (CAAAA)n Simple_repeat Simple_repeat 1 36 0 982 257 92 14 chr12 3701260 3701618 -140580871 + Charlie7 DNA MER1_type 180 565 -2047 465 212 83 86 chr12 3701703 3702028 -140580461 + Charlie7 DNA MER1_type 2192 2515 -97 184 241 35 35 chr12 3702156 3702214 -140580275 + L2 LINE L2 2934 2991 -322 205 208 21 0 chr12 3702254 3702302 -140580187 + L2 LINE L2 3201 3249 -23 525 307 81 61 chr12 3702502 3703070 -140579419 + L1M4 LINE L1 2699 3263 -2883 2295 102 0 0 chr12 3703388 3703673 -140578816 - AluSg SINE Alu -25 285 1 1114 297 70 50 chr12 3704010 3704735 -140577754 + L2 LINE L2 2333 3064 -249 276 111 44 0 chr12 3706166 3706211 -140576278 + MIR SINE MIR 183 229 -33 474 226 34 85 chr12 3708117 3708294 -140574195 + L2 LINE L2 2885 3052 -220 1881 143 0 40 chr12 3708719 3709019 -140573470 - AluJo SINE Alu -22 290 3 713 121 258 0 chr12 3709021 3709211 -140573278 - Charlie1a DNA MER1_type -30 1425 1187 698 173 93 0 chr12 3709216 3709366 -140573123 - MER20 DNA MER1_type -6 213 50 6724 76 20 0 chr12 3709418 3710708 -140571781 - L1PA10 LINE L1 0 6168 4890 4674 189 75 6 chr12 3710710 3711750 -140570739 - Charlie1a DNA MER1_type -1591 1170 51 198 0 0 0 chr12 3711750 3711772 -140570717 + (C)n Simple_repeat Simple_repeat 1 22 0 4674 189 75 6 chr12 3711772 3711813 -140570676 - Charlie1a DNA MER1_type -2710 51 14 756 238 28 6 chr12 3711929 3712110 -140570379 - MIR3 SINE MIR -1 207 23 1348 112 5 0 chr12 3712837 3713033 -140569456 + L1PA13 LINE L1 5951 6147 -16 285 29 0 0 chr12 3713033 3713067 -140569422 + (CA)n Simple_repeat Simple_repeat 2 35 0 3028 169 37 2 chr12 3715353 3715914 -140566575 + LTR26 LTR ERV1 1 581 -22 412 127 0 0 chr12 3715920 3715983 -140566506 + LTR26 LTR ERV1 541 603 0 202 271 57 43 chr12 3716495 3716565 -140565924 - MIR SINE MIR -98 164 94 519 306 42 14 chr12 3716634 3716850 -140565639 + MIR SINE MIR 20 241 -21 234 0 0 0 chr12 3717781 3717807 -140564682 + (TTTTG)n Simple_repeat Simple_repeat 3 28 0 1888 157 10 7 chr12 3718025 3718325 -140564164 - AluJo SINE Alu -11 301 1 2330 90 30 0 chr12 3718554 3718853 -140563636 - AluSc SINE Alu -1 308 1 313 273 91 0 chr12 3720813 3720901 -140561588 - MIR3 SINE MIR -28 180 85 545 238 67 47 chr12 3721309 3721502 -140560987 - MIR SINE MIR -58 204 8 273 238 36 12 chr12 3722449 3722533 -140559956 - LTR23 LTR ERV1 0 437 352 2311 113 21 0 chr12 3722618 3722954 -140559535 - L1PA13 LINE L1 -10 6153 5811 726 98 0 0 chr12 3722955 3723057 -140559432 + L1PA13 LINE L1 5690 5791 -370 1383 177 90 3 chr12 3723059 3723359 -140559130 - LTR56 LTR ERV1 -111 334 9 365 107 165 29 chr12 3723854 3723946 -140558543 - MIR SINE MIR -62 146 58 209 252 233 48 chr12 3724179 3724282 -140558207 + MIR SINE MIR 2 123 -139 809 183 26 26 chr12 3724323 3724476 -140558013 - FRAM SINE Alu -25 151 1 247 225 225 0 chr12 3725254 3725343 -140557146 - L2 LINE L2 0 3313 3205 993 157 141 0 chr12 3725380 3725565 -140556924 + MER101B LTR ERV1 234 444 -126 2028 80 36 25 chr12 3725573 3725847 -140556642 + AluSp SINE Alu 15 291 -22 380 152 42 0 chr12 3725847 3726012 -140556477 + (TA)n Simple_repeat Simple_repeat 1 172 0 33 25 0 0 chr12 3726012 3726052 -140556437 + AT_rich Low_complexity Low_complexity 1 40 0 713 145 23 8 chr12 3726052 3726183 -140556306 + MER101 LTR ERV1 338 470 -4 253 305 29 19 chr12 3726274 3726379 -140556110 - L2 LINE L2 -494 2820 2715 450 305 11 9 chr12 3726845 3726995 -140555494 + MIR3 SINE MIR 47 192 -45 382 298 61 0 chr12 3727116 3727233 -140555256 + MIR SINE MIR 43 168 -40 2601 54 0 10 chr12 3727672 3727985 -140554504 + AluY SINE Alu 1 310 -1 1931 244 84 16 chr12 3728725 3729298 -140553191 - MER90 LTR ERV1 0 614 3 1356 204 87 9 chr12 3730118 3730451 -140552038 + L1MB7 LINE L1 5826 6184 0 213 121 0 0 chr12 3733075 3733108 -140549381 + (TGAA)n Simple_repeat Simple_repeat 4 36 0 610 276 86 17 chr12 3733149 3733381 -140549108 + MIR SINE MIR 13 260 -2 651 343 55 75 chr12 3733675 3734907 -140547582 + L2 LINE L2 1603 2809 -505 411 294 79 1 chr12 3734940 3735087 -140547402 + MIR SINE MIR 35 190 -61 432 326 81 52 chr12 3735176 3735618 -140546871 + L2 LINE L2 2817 3271 -1 219 386 95 21 chr12 3736849 3737038 -140545451 + L3b LINE CR1 1289 1491 -92 281 306 120 28 chr12 3737986 3738094 -140544395 - L2 LINE L2 -1 3271 3154 653 82 10 0 chr12 3738958 3739055 -140543434 + (TCTA)n Simple_repeat Simple_repeat 1 98 0 260 289 87 0 chr12 3741126 3741230 -140541259 - MIR3 SINE MIR -9 199 87 310 250 43 11 chr12 3741290 3741382 -140541107 - MIR3 SINE MIR -108 100 6 426 253 31 62 chr12 3743544 3743706 -140538783 - MIR SINE MIR -82 180 24 457 287 18 17 chr12 3743713 3743920 -140538569 + MIR SINE MIR 36 241 -21 486 268 22 29 chr12 3745045 3745183 -140537306 - MIR3 SINE MIR -67 141 5 328 255 131 48 chr12 3745257 3745402 -140537087 - MIR SINE MIR -27 235 79 395 294 40 56 chr12 3746201 3746563 -140535926 + L1MC4a LINE L1 5696 6035 -86 24 0 0 0 chr12 3746993 3747017 -140535472 + AT_rich Low_complexity Low_complexity 1 24 0 256 368 97 26 chr12 3748210 3748365 -140534124 - L3 LINE CR1 0 1577 1412 700 205 112 6 chr12 3748568 3748729 -140533760 + MER5B DNA MER1_type 1 178 0 546 275 192 0 chr12 3748768 3748950 -140533539 + MIR SINE MIR 31 247 -15 220 254 55 0 chr12 3749016 3749071 -140533418 - MIR SINE MIR -10 252 195 187 330 0 23 chr12 3749319 3749407 -140533082 + L2 LINE L2 3227 3312 -1 185 214 0 48 chr12 3749497 3749539 -140532950 - L2 LINE L2 -15 3298 3259 331 279 95 27 chr12 3749557 3749704 -140532785 - MLT1G1 LTR MaLR 0 595 439 388 299 76 11 chr12 3750065 3750249 -140532240 + MIR3 SINE MIR 4 199 -9 396 59 0 0 chr12 3750524 3750575 -140531914 + (CA)n Simple_repeat Simple_repeat 1 51 0 405 0 0 0 chr12 3751392 3751437 -140531052 + (GA)n Simple_repeat Simple_repeat 2 46 0 22 35 0 0 chr12 3751793 3751822 -140530667 + GC_rich Low_complexity Low_complexity 1 29 0 21 0 0 0 chr12 3752010 3752031 -140530458 + GC_rich Low_complexity Low_complexity 1 21 0 513 0 0 0 chr12 3752549 3752606 -140529883 + (TG)n Simple_repeat Simple_repeat 2 58 0 209 333 81 18 chr12 3754876 3754987 -140527502 - L2 LINE L2 -8 3264 3147 414 206 56 86 chr12 3755036 3755205 -140527284 - MIR SINE MIR -63 145 37 296 288 144 0 chr12 3755510 3755663 -140526826 + MIR SINE MIR 82 256 -6 400 298 0 15 chr12 3756122 3756253 -140526236 + L2 LINE L2 2932 3060 -212 234 0 0 0 chr12 3756931 3756957 -140525532 + (T)n Simple_repeat Simple_repeat 1 26 0 518 230 241 16 chr12 3757263 3757454 -140525035 + MIR SINE MIR 29 262 0 21 0 0 0 chr12 3757629 3757650 -140524839 + AT_rich Low_complexity Low_complexity 1 21 0 328 325 165 34 chr12 3757986 3758223 -140524266 - L3b LINE CR1 -26 1557 1290 198 302 38 0 chr12 3758545 3758598 -140523891 - MIR3 SINE MIR -3 205 151 442 324 7 14 chr12 3758885 3759027 -140523462 - MIR SINE MIR -114 148 8 1826 192 45 11 chr12 3759501 3759876 -140522613 - MLT1C LTR MaLR 0 467 80 28 0 0 0 chr12 3759876 3759904 -140522585 + AT_rich Low_complexity Low_complexity 1 28 0 44128 29 21 1 chr12 3759912 3765945 -140516544 - L1HS LINE L1 0 6155 1 480 157 22 11 chr12 3765949 3766038 -140516451 - MLT1C LTR MaLR -375 92 3 493 384 20 0 chr12 3766226 3766424 -140516065 - MIR SINE MIR -3 259 58 565 262 94 53 chr12 3766779 3767023 -140515466 + MIR SINE MIR 9 262 0 2471 56 0 0 chr12 3767831 3768137 -140514352 - AluY SINE Alu -5 306 1 1264 125 0 0 chr12 3768463 3768655 -140513834 - AluSg/x SINE Alu 0 312 121 466 329 140 40 chr12 3769370 3770314 -140512175 + L2 LINE L2 2156 3267 -5 1372 139 0 17 chr12 3771035 3771272 -140511217 + L1MA5A LINE L1 6061 6293 -4 372 324 205 42 chr12 3772790 3773386 -140509103 + L2 LINE L2 1881 2573 -741 180 111 0 0 chr12 3773495 3773522 -140508967 + (TGAA)n Simple_repeat Simple_repeat 2 28 0 213 298 0 0 chr12 3773675 3773732 -140508757 + MIR SINE MIR 34 90 -118 577 272 31 0 chr12 3775686 3775848 -140506641 - MIR SINE MIR -12 250 84 683 132 88 137 chr12 3776036 3776099 -140506390 + MER5A DNA MER1_type 15 80 -109 1198 35 0 0 chr12 3776099 3776242 -140506247 + L1PA4 LINE L1 6010 6152 -3 683 132 88 137 chr12 3776242 3776360 -140506129 + MER5A DNA MER1_type 80 187 -2 190 285 130 41 chr12 3776253 3776376 -140506113 - MER5A DNA MER1_type -51 138 5 * 282 116 0 0 chr12 3777032 3777075 -140505414 + (TTCA)n Simple_repeat Simple_repeat 2 44 0 751 305 56 13 chr12 3777075 3777380 -140505109 - L2 LINE L2 0 3313 2996 191 88 29 0 chr12 3777727 3777761 -140504728 + (CAA)n Simple_repeat Simple_repeat 2 36 0 256 202 144 29 chr12 3778186 3778290 -140504199 + BaEV-int LTR ERV1 187 302 -6347 551 363 3 7 chr12 3778471 3778760 -140503729 + BaEV-int LTR ERV1 719 1006 -6779 703 318 65 58 chr12 3778939 3779704 -140502785 + BaEV-int LTR ERV1 1264 2034 -5751 462 159 0 0 chr12 3779705 3779774 -140502715 + LTR18B LTR ERVL 334 402 -212 458 101 0 25 chr12 3779827 3779906 -140502583 + LTR18B LTR ERVL 268 344 -270 258 344 6 25 chr12 3779923 3780080 -140502409 + GA-rich Low_complexity Low_complexity 2 155 0 566 250 133 27 chr12 3780445 3780701 -140501788 - MER102b DNA MER1_type -3 338 56 1650 324 25 45 chr12 3781248 3782008 -140500481 + BaEV-int LTR ERV1 3104 3877 -3908 2295 92 0 0 chr12 3782008 3782311 -140500178 + AluSq SINE Alu 1 303 -10 1650 324 25 45 chr12 3782311 3783100 -140499389 + BaEV-int LTR ERV1 3877 4680 -3105 2060 83 49 0 chr12 3783100 3783388 -140499101 + AluSg1 SINE Alu 1 302 -7 1650 324 25 45 chr12 3783388 3783489 -140499000 + BaEV-int LTR ERV1 4680 5759 -2026 233 29 29 0 chr12 3783495 3783529 -140498960 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 250 326 132 19 chr12 3783787 3784112 -140498377 + BaEV-int LTR ERV1 5923 6284 -1501 421 291 60 86 chr12 3784207 3784825 -140497664 + BaEV-int LTR ERV1 5285 5886 -763 213 227 27 40 chr12 3784931 3785006 -140497483 + A-rich Low_complexity Low_complexity 5 78 0 180 0 0 0 chr12 3785359 3785379 -140497110 + (A)n Simple_repeat Simple_repeat 1 20 0 1932 139 3 0 chr12 3785657 3785952 -140496537 + AluSx SINE Alu 1 296 -16 4018 195 51 33 chr12 3786566 3787913 -140494576 - L1MB3 LINE L1 -1 6251 1993 503 219 10 0 chr12 3787914 3788010 -140494479 - Tigger7 DNA MER2_type -1 2486 2390 * 1501 201 4 26 chr12 3788008 3788281 -140494208 - Tigger7 DNA MER2_type -2220 267 1 4826 259 69 30 chr12 3788281 3790099 -140492390 - L1MEc LINE L1 -4407 1989 100 242 296 62 0 chr12 3792708 3792789 -140489700 - MER5A DNA MER1_type -31 158 73 204 118 39 20 chr12 3792961 3793012 -140489477 + (TATAA)n Simple_repeat Simple_repeat 5 56 0 261 202 53 53 chr12 3793020 3793067 -140489422 - MER103 DNA DNA -71 95 49 2245 65 0 7 chr12 3793067 3793358 -140489131 + AluSx SINE Alu 24 312 0 261 202 53 53 chr12 3793358 3793404 -140489085 - MER103 DNA DNA -116 50 2 665 174 193 19 chr12 3793461 3793622 -140488867 - MER5A DNA MER1_type 0 189 1 1277 97 121 5 chr12 3794065 3794271 -140488218 - MER30 DNA MER1_type 0 230 1 253 284 0 84 chr12 3795204 3795299 -140487190 + MIR SINE MIR 52 138 -70 181 222 0 0 chr12 3795467 3795512 -140486977 + L2 LINE L2 3217 3261 -11 492 276 142 39 chr12 3795530 3795762 -140486727 + MIR SINE MIR 6 261 -1 620 307 56 70 chr12 3797516 3798220 -140484269 - L1ME4a LINE L1 -248 5873 5174 626 348 41 41 chr12 3798239 3798707 -140483782 + L2 LINE L2 2291 2758 -556 877 267 71 8 chr12 3799883 3800123 -140482366 - MIR SINE MIR -2 260 6 990 250 76 0 chr12 3800741 3800965 -140481524 - MIR SINE MIR -21 241 1 367 299 132 20 chr12 3800965 3801137 -140481352 - MIR SINE MIR -57 205 18 397 268 114 8 chr12 3802184 3802307 -140480182 - MIR SINE MIR -3 259 124 437 261 17 9 chr12 3802484 3802599 -140479890 - MIR SINE MIR -18 244 129 203 274 219 0 chr12 3802673 3802746 -140479743 - MIR SINE MIR -170 92 4 318 277 92 8 chr12 3803838 3803957 -140478532 - L3b LINE CR1 -176 1407 1279 3462 85 9 9 chr12 3805157 3805617 -140476872 - LTR46 LTR ERV1 0 460 1 630 248 63 71 chr12 3805785 3806023 -140476466 - MIR SINE MIR -26 236 1 230 260 0 0 chr12 3806031 3806081 -140476408 - L2 LINE L2 -21 3251 3202 520 272 15 0 chr12 3806259 3806395 -140476094 - MLT2F LTR ERVL -522 141 4 6266 229 87 62 chr12 3806407 3808212 -140474277 + L1ME2 LINE L1 2466 4225 -1959 840 175 0 14 chr12 3808212 3808355 -140474134 + AluJb SINE Alu 1 141 -171 6266 229 87 62 chr12 3808355 3810017 -140472472 + L1ME2 LINE L1 4225 6184 0 21 0 0 0 chr12 3810214 3810235 -140472254 + AT_rich Low_complexity Low_complexity 1 21 0 220 272 25 49 chr12 3810297 3810378 -140472111 - L3b LINE CR1 -188 1395 1317 880 228 28 26 chr12 3811101 3811328 -140471161 + MIR SINE MIR 18 242 -20 189 147 0 0 chr12 3812507 3812541 -140469948 + (GA)n Simple_repeat Simple_repeat 1 34 0 269 267 23 0 chr12 3812557 3812643 -140469846 + (CAGAGA)n Simple_repeat Simple_repeat 3 90 0 * 302 274 5 59 chr12 3812599 3812706 -140469783 + GA-rich Low_complexity Low_complexity 1 95 -81 1971 101 4 0 chr12 3812706 3812963 -140469526 + AluSx SINE Alu 45 302 -10 302 274 5 59 chr12 3812963 3813041 -140469448 + GA-rich Low_complexity Low_complexity 95 176 0 201 174 101 43 chr12 3813144 3813213 -140469276 - MIR SINE MIR -177 85 13 310 321 9 9 chr12 3814199 3814305 -140468184 + MIR SINE MIR 37 142 -66 228 67 0 0 chr12 3814742 3814772 -140467717 + (TCC)n Simple_repeat Simple_repeat 1 30 0 1543 272 102 105 chr12 3815800 3818122 -140464367 - L2 LINE L2 -40 3273 967 221 202 34 0 chr12 3818388 3818459 -140464030 - MIR SINE MIR -62 146 99 186 189 0 0 chr12 3818942 3818979 -140463510 + CT-rich Low_complexity Low_complexity 1 37 0 2144 257 99 11 chr12 3819045 3819656 -140462833 - L1MC4 LINE L1 -143 7899 7343 621 91 0 27 chr12 3819656 3819766 -140462723 + (TCTA)n Simple_repeat Simple_repeat 3 109 0 228 35 0 0 chr12 3819765 3819794 -140462695 + (CAGC)n Simple_repeat Simple_repeat 4 32 0 * 2144 257 99 11 chr12 3819766 3820383 -140462106 - L1MC4 LINE L1 -699 7343 6448 330 357 60 0 chr12 3821498 3821680 -140460809 + MIR SINE MIR 65 257 -5 279 300 69 64 chr12 3821962 3822195 -140460294 - L3 LINE CR1 -562 1015 782 241 277 161 65 chr12 3822292 3822447 -140460042 - L3 LINE CR1 -987 590 421 487 279 87 6 chr12 3822453 3822625 -140459864 + MIR SINE MIR 23 208 -54 547 189 47 0 chr12 3822708 3822814 -140459675 - MER63 DNA MER1_type -325 737 1 271 381 19 19 chr12 3822871 3823026 -140459463 - L3 LINE CR1 -1158 419 265 455 291 58 54 chr12 3823044 3823267 -140459222 - L2 LINE L2 0 3313 3090 730 215 11 45 chr12 3823290 3823467 -140459022 - MER63A DNA MER1_type 0 210 40 195 333 61 0 chr12 3824456 3824555 -140457934 + MIR SINE MIR 102 206 -56 255 244 11 67 chr12 3825836 3825926 -140456563 + L2 LINE L2 3174 3258 -14 238 269 75 0 chr12 3826083 3826150 -140456339 + MER91A DNA MER1_type 14 85 -111 223 109 55 18 chr12 3826382 3826437 -140456052 + (TCTA)n Simple_repeat Simple_repeat 2 58 0 528 322 79 9 chr12 3827873 3828100 -140454389 - MIR SINE MIR -1 261 19 234 195 0 0 chr12 3828306 3828347 -140454142 + MIR SINE MIR 99 139 -123 2048 156 83 22 chr12 3828356 3828508 -140453981 - Tigger2 DNA MER2_type 0 2718 2577 2464 71 7 0 chr12 3828508 3828805 -140453684 + AluSq SINE Alu 1 299 -14 2048 156 83 22 chr12 3828805 3829062 -140453427 - Tigger2 DNA MER2_type -141 2577 2284 318 180 16 0 chr12 3829069 3829130 -140453359 - Tigger2 DNA MER2_type -2656 62 1 379 263 11 0 chr12 3829130 3829225 -140453264 + MIR SINE MIR 150 245 -17 543 259 129 24 chr12 3831667 3831837 -140450652 + MIR SINE MIR 47 234 -28 368 173 25 0 chr12 3832735 3832816 -140449673 + CT-rich Low_complexity Low_complexity 2 84 0 207 0 0 0 chr12 3832958 3832981 -140449508 + (GGAA)n Simple_repeat Simple_repeat 2 24 0 1216 257 65 24 chr12 3833607 3834443 -140448046 - L1MCc LINE L1 -4889 1534 1138 266 269 0 30 chr12 3834860 3834927 -140447562 - L2 LINE L2 -8 3264 3200 416 273 16 16 chr12 3835047 3835168 -140447321 - MER5A DNA MER1_type -26 163 43 249 293 114 8 chr12 3835065 3835188 -140447301 + MER5A DNA MER1_type 54 189 0 * 202 352 0 14 chr12 3835207 3835278 -140447211 - MIR SINE MIR -87 121 52 822 226 86 53 chr12 3835282 3835525 -140446964 - MIR SINE MIR 0 262 12 279 262 81 114 chr12 3836259 3836408 -140446081 + MIR SINE MIR 48 191 -71 2024 120 42 0 chr12 3836453 3836737 -140445752 + AluSx SINE Alu 1 296 -16 343 284 74 0 chr12 3836979 3837074 -140445415 - MIR SINE MIR -127 135 34 345 312 19 18 chr12 3837240 3837375 -140445114 + MIR SINE MIR 10 145 -63 203 336 55 36 chr12 3838274 3838286 -140444203 - L3b LINE CR1 -233 1350 1340 1421 114 59 9 chr12 3838286 3838505 -140443984 - MER30 DNA MER1_type 0 230 1 203 336 55 36 chr12 3838505 3838602 -140443887 - L3b LINE CR1 -243 1340 1239 237 235 12 37 chr12 3838675 3838756 -140443733 - L1ME4a LINE L1 -105 6016 5938 604 128 0 0 chr12 3838839 3838917 -140443572 - AluJb SINE Alu -22 290 213 1663 164 24 24 chr12 3838947 3839239 -140443250 - AluJo SINE Alu -20 292 1 189 353 29 36 chr12 3839605 3839744 -140442745 - L3 LINE CR1 -75 1502 1365 318 50 0 0 chr12 3841044 3841084 -140441405 + (TG)n Simple_repeat Simple_repeat 2 41 0 532 312 169 61 chr12 3841910 3842301 -140440188 + L3 LINE CR1 1127 1559 -18 186 398 17 0 chr12 3842814 3842932 -140439557 - L3b LINE CR1 -185 1398 1279 418 227 273 0 chr12 3843263 3843391 -140439098 - MER5A DNA MER1_type -21 168 6 1535 156 126 58 chr12 3844755 3845120 -140437369 - MLT1B LTR MaLR 0 390 1 447 283 58 74 chr12 3845325 3845459 -140437030 - L1MC4a LINE L1 -1739 6069 5934 562 213 24 0 chr12 3845459 3845586 -140436903 - L1MD2 LINE L1 -15 6344 6215 447 283 58 74 chr12 3845586 3845762 -140436727 - L1MC4a LINE L1 -1874 5934 5764 1612 115 0 37 chr12 3846063 3846306 -140436183 - AluJo SINE Alu 0 312 79 1170 160 0 0 chr12 3847253 3847441 -140435048 + MER5A DNA MER1_type 2 189 0 315 288 25 76 chr12 3847816 3848014 -140434475 - L1MCa LINE L1 -4308 2118 1931 36 100 0 0 chr12 3848014 3848134 -140434355 + AT_rich Low_complexity Low_complexity 1 120 0 209 305 66 66 chr12 3849212 3849379 -140433110 + L2 LINE L2 3106 3272 0 502 271 0 0 chr12 3849866 3849999 -140432490 + MER94 DNA DNA 1 133 -1 232 297 44 0 chr12 3850011 3850102 -140432387 - MIR SINE MIR -55 207 113 207 302 105 0 chr12 3850095 3850181 -140432308 - MIR3 SINE MIR -111 97 3 * 195 447 0 0 chr12 3850251 3850354 -140432135 + MER5B DNA MER1_type 70 172 -6 203 352 33 22 chr12 3850560 3850651 -140431838 + L3b LINE CR1 1405 1496 -87 394 301 160 14 chr12 3851119 3851338 -140431151 - L3 LINE CR1 -114 1463 1213 303 309 70 91 chr12 3851541 3851771 -140430718 - L2 LINE L2 -18 3254 3030 1502 160 91 29 chr12 3852124 3852399 -140430090 - AluJo SINE Alu -9 303 12 190 313 71 18 chr12 3853588 3853700 -140428789 + L3b LINE CR1 1340 1457 -126 180 111 0 0 chr12 3854444 3854471 -140428018 + (TG)n Simple_repeat Simple_repeat 1 27 0 350 293 86 9 chr12 3858046 3858162 -140424327 + MIR SINE MIR 25 149 -113 436 327 116 33 chr12 3859507 3860033 -140422456 - L2 LINE L2 -1 3271 2709 393 270 38 44 chr12 3860721 3860880 -140421609 + MIR SINE MIR 34 191 -71 639 252 24 16 chr12 3861314 3861505 -140420984 + MIR SINE MIR 5 192 -51 458 311 34 28 chr12 3861663 3861840 -140420649 + L2 LINE L2 3095 3272 0 258 300 18 36 chr12 3861908 3862018 -140420471 + MIR3 SINE MIR 101 208 0 1826 147 33 52 chr12 3863753 3864121 -140418368 - MER46B DNA MER2_type 0 236 1 279 0 0 0 chr12 3864360 3864391 -140418098 + (TG)n Simple_repeat Simple_repeat 2 32 0 823 201 74 0 chr12 3864832 3864981 -140417508 - FRAM SINE Alu -24 152 1 217 200 0 0 chr12 3865011 3865056 -140417433 - MER5B DNA MER1_type -129 49 5 202 300 11 33 chr12 3865503 3865593 -140416896 + MIR SINE MIR 62 149 -59 257 313 0 0 chr12 3865902 3865966 -140416523 + G-rich Low_complexity Low_complexity 2 65 0 211 269 0 30 chr12 3866229 3866296 -140416193 + GA-rich Low_complexity Low_complexity 3 67 0 324 340 61 0 chr12 3866510 3866657 -140415832 - L3 LINE CR1 -135 1442 1287 809 104 0 14 chr12 3867362 3867506 -140414983 - L1MB4 LINE L1 0 6180 6039 245 267 102 51 chr12 3867916 3868092 -140414397 - MIR SINE MIR -2 260 76 213 250 211 0 chr12 3868558 3868634 -140413855 - L2 LINE L2 -33 3239 3148 3029 248 39 32 chr12 3870101 3871657 -140410832 + L1M4c LINE L1 916 2595 -3787 2393 86 0 7 chr12 3871657 3871959 -140410530 + AluSq SINE Alu 6 305 -8 3029 248 39 32 chr12 3871959 3872100 -140410389 + L1M4c LINE L1 2595 2733 -3649 447 293 75 28 chr12 3873064 3873276 -140409213 - MIR SINE MIR 0 262 41 1478 186 78 0 chr12 3873402 3873564 -140408925 - AluJo SINE Alu -22 290 97 468 0 0 0 chr12 3873564 3873616 -140408873 + (TTTA)n Simple_repeat Simple_repeat 3 54 0 1478 186 78 0 chr12 3873616 3873722 -140408767 - AluJo SINE Alu -215 97 1 317 125 18 0 chr12 3874096 3874152 -140408337 + (CA)n Simple_repeat Simple_repeat 2 58 0 228 292 73 21 chr12 3874327 3874423 -140408066 - MIR3 SINE MIR -27 181 81 204 240 0 0 chr12 3875013 3875063 -140407426 + A-rich Low_complexity Low_complexity 2 51 0 309 348 44 40 chr12 3876380 3876607 -140405882 + L2 LINE L2 3028 3255 -17 189 229 167 111 chr12 3876721 3876865 -140405624 - MIR SINE MIR -46 216 65 192 288 17 17 chr12 3876974 3877033 -140405456 + L2 LINE L2 3255 3313 0 212 303 50 40 chr12 3878098 3878197 -140404292 - MIR SINE MIR -99 163 64 180 111 0 0 chr12 3878887 3878914 -140403575 + (GAAAA)n Simple_repeat Simple_repeat 4 30 0 1214 226 55 0 chr12 3878921 3879213 -140403276 - MER46C DNA MER2_type -23 315 8 254 270 79 11 chr12 3879573 3879662 -140402827 + L3 LINE CR1 1370 1464 -113 2093 103 0 0 chr12 3882125 3882397 -140400092 + AluSg1 SINE Alu 38 309 0 216 309 25 0 chr12 3883029 3883110 -140399379 + MIR SINE MIR 40 122 -86 195 129 0 0 chr12 3883341 3883372 -140399117 + (TG)n Simple_repeat Simple_repeat 2 32 0 388 324 7 21 chr12 3883871 3884016 -140398473 + MIR3 SINE MIR 45 187 -21 438 224 7 92 chr12 3884878 3885030 -140397459 - L3b LINE CR1 -235 1348 1210 542 261 147 0 chr12 3885439 3885596 -140396893 + MER5A DNA MER1_type 9 188 -1 212 178 22 0 chr12 3885720 3885765 -140396724 - MER5B DNA MER1_type -126 52 7 209 379 0 0 chr12 3887100 3887166 -140395323 - L2 LINE L2 -86 3186 3121 429 179 0 13 chr12 3887230 3887308 -140395181 + L2 LINE L2 3194 3270 -43 325 236 0 0 chr12 3887919 3887991 -140394498 + L2 LINE L2 3162 3233 -39 467 287 14 14 chr12 3888557 3888700 -140393789 + MIR3 SINE MIR 3 145 -63 917 131 12 0 chr12 3888716 3888970 -140393519 + CT-rich Low_complexity Low_complexity 1 257 0 264 149 0 0 chr12 3889050 3889097 -140393392 + (GGA)n Simple_repeat Simple_repeat 1 47 0 271 254 0 0 chr12 3889845 3889900 -140392589 + (CA)n Simple_repeat Simple_repeat 1 55 0 308 176 34 126 chr12 3890705 3890824 -140391665 + MIR SINE MIR 33 140 -68 395 328 18 41 chr12 3892634 3892672 -140389817 - MIR3 SINE MIR -8 200 163 2614 102 72 5 chr12 3892672 3893073 -140389416 + MSTA LTR MaLR 1 428 0 395 328 18 41 chr12 3893073 3893205 -140389284 - MIR3 SINE MIR -45 163 34 296 248 36 13 chr12 3893358 3893474 -140389015 + MIR SINE MIR 72 190 -71 1767 155 7 4 chr12 3896221 3896498 -140385991 - AluJo SINE Alu -10 302 25 955 216 118 0 chr12 3896631 3896988 -140385501 - L1ME4a LINE L1 -197 5924 5526 251 294 12 35 chr12 3897192 3897277 -140385212 + MIR SINE MIR 108 190 -72 183 286 29 29 chr12 3898025 3898095 -140384394 + L2 LINE L2 3199 3268 -4 3402 86 55 6 chr12 3898135 3898623 -140383866 + LTR10D LTR ERV1 2 513 0 339 301 72 57 chr12 3899333 3899383 -140383106 - L2 LINE L2 -2 3311 3263 186 103 0 0 chr12 3899383 3899412 -140383077 + (ATG)n Simple_repeat Simple_repeat 3 31 0 339 301 72 57 chr12 3899412 3899570 -140382919 - L2 LINE L2 -50 3263 3100 270 321 16 0 chr12 3899617 3899713 -140382776 + MIR SINE MIR 40 121 -87 192 179 0 0 chr12 3900174 3900213 -140382276 + (CA)n Simple_repeat Simple_repeat 2 40 0 512 286 19 26 chr12 3900963 3901117 -140381372 + L2 LINE L2 3155 3307 -6 267 368 9 9 chr12 3901135 3901241 -140381248 + L2 LINE L2 3208 3313 0 2384 96 0 0 chr12 3901780 3902081 -140380408 + AluSg SINE Alu 1 301 -9 1786 186 7 0 chr12 3902946 3903231 -140379258 - AluJo SINE Alu -25 287 1 306 104 0 42 chr12 3904421 3904469 -140378020 - L1MC4 LINE L1 -1339 6703 6658 775 53 59 6 chr12 3904481 3904650 -140377839 + (TA)n Simple_repeat Simple_repeat 1 178 0 180 339 18 0 chr12 3904710 3904766 -140377723 + L3 LINE CR1 1517 1573 -4 188 132 0 26 chr12 3904766 3904804 -140377685 + (TA)n Simple_repeat Simple_repeat 1 37 0 189 74 0 0 chr12 3905710 3905737 -140376752 + (TTCA)n Simple_repeat Simple_repeat 4 30 0 770 259 154 54 chr12 3905739 3906333 -140376156 - L2 LINE L2 0 3313 2647 1194 241 89 51 chr12 3906337 3906785 -140375704 - L2 LINE L2 -1376 1938 1474 198 316 18 0 chr12 3906972 3907029 -140375460 + L3 LINE CR1 1517 1574 -3 216 280 0 0 chr12 3907117 3907167 -140375322 - MIR SINE MIR -12 250 201 459 264 208 6 chr12 3907619 3907778 -140374711 - MIR SINE MIR -57 205 15 220 365 44 25 chr12 3908768 3908927 -140373562 + MIR SINE MIR 37 198 -64 2155 24 8 0 chr12 3909701 3909985 -140372504 + L1PA4 LINE L1 5895 6180 0 294 271 104 21 chr12 3910390 3910486 -140372003 + L2 LINE L2 3168 3271 -1 358 172 0 23 chr12 3910517 3910604 -140371885 + GA-rich Low_complexity Low_complexity 3 87 0 229 263 18 0 chr12 3911711 3911768 -140370721 + L3 LINE CR1 1519 1576 -1 283 289 55 31 chr12 3911888 3912016 -140370473 + L1MC4a LINE L1 5844 5974 -1834 637 241 60 18 chr12 3912453 3912619 -140369870 + MIR3 SINE MIR 21 193 -15 188 184 20 0 chr12 3913494 3913543 -140368946 + (TGAA)n Simple_repeat Simple_repeat 2 51 0 270 235 66 175 chr12 3913627 3913703 -140368786 + MIR SINE MIR 88 134 -128 2417 82 0 7 chr12 3913703 3913997 -140368492 - AluSg SINE Alu -18 292 1 270 235 66 175 chr12 3913997 3914103 -140368386 + MIR SINE MIR 134 250 -12 269 315 46 0 chr12 3914770 3914878 -140367611 - MIR3 SINE MIR -7 201 89 362 331 66 22 chr12 3915429 3915610 -140366879 - L3b LINE CR1 -210 1373 1185 209 309 0 60 chr12 3917468 3917552 -140364937 + MIR3 SINE MIR 117 195 -13 215 340 117 10 chr12 3918577 3918680 -140363809 - MIR SINE MIR -142 120 7 294 95 0 0 chr12 3919925 3919967 -140362522 + (TTCA)n Simple_repeat Simple_repeat 3 44 0 737 216 22 74 chr12 3919968 3920199 -140362290 - L2 LINE L2 -12 3301 3083 531 0 0 0 chr12 3921546 3921605 -140360884 + (CA)n Simple_repeat Simple_repeat 2 60 0 200 242 210 64 chr12 3923063 3923253 -140359236 + MIR SINE MIR 42 262 0 1435 307 134 46 chr12 3923985 3924807 -140357682 - L3 LINE CR1 -4 1573 680 374 337 132 36 chr12 3924891 3925277 -140357212 - L1 LINE L1 -3321 2825 2403 195 286 238 32 chr12 3925280 3925406 -140357083 - L3 LINE CR1 -891 686 535 2151 136 0 0 chr12 3925441 3925736 -140356753 + AluSx SINE Alu 1 295 -17 612 299 70 14 chr12 3926071 3926285 -140356204 + MIR SINE MIR 32 257 -5 195 259 24 82 chr12 3926252 3926337 -140356152 - MER5A DNA MER1_type -109 80 1 * 291 114 0 0 chr12 3927044 3927088 -140355401 + (TG)n Simple_repeat Simple_repeat 1 44 0 199 333 88 39 chr12 3927504 3927606 -140354883 - L3b LINE CR1 0 1583 1477 265 252 222 30 chr12 3927842 3927977 -140354512 - MIR3 SINE MIR -10 198 38 405 321 33 22 chr12 3929027 3929211 -140353278 + MER5A DNA MER1_type 1 186 -3 208 278 28 14 chr12 3929867 3929939 -140352550 + MER5B DNA MER1_type 48 120 -58 512 269 33 33 chr12 3931341 3931523 -140350966 - MIR3 SINE MIR -23 185 4 407 280 15 45 chr12 3932074 3932206 -140350283 - MIR3 SINE MIR -50 158 31 412 231 60 0 chr12 3932236 3932351 -140350138 - MER5A DNA MER1_type -63 126 4 924 219 64 27 chr12 3932481 3932700 -140349789 - MIR SINE MIR 0 262 36 563 312 0 87 chr12 3933757 3933975 -140348514 + MIR SINE MIR 35 233 -29 667 324 70 4 chr12 3934428 3934672 -140347817 - MIR SINE MIR -1 261 2 837 169 0 7 chr12 3936070 3936212 -140346277 + MLT1A1 LTR MaLR 1 141 -224 310 220 3 19 chr12 3936333 3936436 -140346053 + LTR16C LTR ERVL 301 438 -52 246 62 0 0 chr12 3936816 3936848 -140345641 + (TCCA)n Simple_repeat Simple_repeat 4 35 0 1869 213 5 11 chr12 3937129 3937496 -140344993 + MLT1A1 LTR MaLR 1 365 0 400 225 217 8 chr12 3938009 3938129 -140344360 - L3b LINE CR1 -228 1355 1211 628 212 75 126 chr12 3941244 3941499 -140340990 - MIR SINE MIR -4 258 17 242 256 78 22 chr12 3941542 3941632 -140340857 + MIR SINE MIR 152 246 -16 248 372 49 26 chr12 3943078 3943304 -140339185 - L3b LINE CR1 -134 1449 1219 2090 121 23 16 chr12 3943495 3943802 -140338687 - AluSg SINE Alu -1 309 1 328 325 122 18 chr12 3944236 3944522 -140337967 + L2 LINE L2 2998 3313 0 678 188 5 130 chr12 3945100 3945292 -140337197 - MER20 DNA MER1_type -4 215 48 2498 142 189 26 chr12 3945292 3945820 -140336669 + LTR18B LTR ERVL 1 614 0 3585 150 18 8 chr12 3946003 3946631 -140335858 + L1MB3 LINE L1 5546 6179 -4 353 328 83 0 chr12 3946696 3946876 -140335613 - MIR SINE MIR -21 241 47 1008 244 47 0 chr12 3946922 3947135 -140335354 - MER58A DNA MER1_type 0 224 2 21344 165 28 9 chr12 3947908 3953224 -140329265 - L1PA13 LINE L1 0 6814 1354 207 69 0 0 chr12 3953224 3953253 -140329236 + (TGGGGG)n Simple_repeat Simple_repeat 1 29 0 21344 165 28 9 chr12 3953253 3954203 -140328286 - L1PA13 LINE L1 -5460 1354 423 1963 177 12 0 chr12 3954205 3954550 -140327939 - L1P LINE L1 -4173 1973 1625 * 2640 138 30 0 chr12 3954548 3954953 -140327536 - L1PA13 LINE L1 -6370 417 1 1726 188 18 3 chr12 3956630 3956966 -140325523 + MER58B DNA MER1_type 1 341 0 190 260 94 42 chr12 3957257 3957353 -140325136 - MIR SINE MIR -138 124 24 578 263 67 10 chr12 3958088 3958282 -140324207 - MIR SINE MIR -12 250 46 528 237 79 7 chr12 3958655 3958807 -140323682 + MIR3 SINE MIR 43 205 -3 375 259 112 18 chr12 3959702 3959872 -140322617 - MIR SINE MIR 0 262 77 237 65 0 0 chr12 3960003 3960034 -140322455 + (TTCA)n Simple_repeat Simple_repeat 3 33 0 207 246 35 35 chr12 3960232 3960289 -140322200 + MIR SINE MIR 68 124 -84 186 340 104 0 chr12 3960437 3960543 -140321946 + L2 LINE L2 3155 3271 -1 600 215 14 28 chr12 3960645 3960789 -140321700 + L1ME1 LINE L1 35 176 -6220 472 274 86 0 chr12 3960789 3960906 -140321583 - MER96 DNA MER1_type? 0 175 49 356 271 194 23 chr12 3960907 3961036 -140321453 - MER96 DNA MER1_type? -24 151 1 458 318 15 0 chr12 3961036 3961168 -140321321 + L1ME1 LINE L1 169 302 -6094 * 8036 242 46 16 chr12 3961166 3963813 -140318676 + L1ME1 LINE L1 2282 5106 -1129 2257 69 42 3 chr12 3963813 3964101 -140318388 - AluY SINE Alu -12 299 1 8036 242 46 16 chr12 3964101 3965158 -140317331 + L1ME1 LINE L1 5106 6129 -106 206 346 143 9 chr12 3965934 3966151 -140316338 - L3b LINE CR1 -50 1533 1288 498 229 66 0 chr12 3966424 3966546 -140315943 + MER21B LTR ERV1 610 739 -124 455 259 0 27 chr12 3966563 3966675 -140315814 + MER63 DNA MER1_type 17 751 -311 411 220 229 0 chr12 3967180 3967289 -140315200 + MIR SINE MIR 12 145 -117 2057 133 0 10 chr12 3967327 3967620 -140314869 - AluSx SINE Alu -22 290 1 205 258 30 0 chr12 3967677 3967743 -140314746 + A-rich Low_complexity Low_complexity 1 68 0 322 261 33 26 chr12 3967940 3968093 -140314396 - L3b LINE CR1 -217 1366 1213 685 273 55 45 chr12 3968900 3969132 -140313357 + LTR16A1 LTR ERVL 147 385 -72 2428 39 0 3 chr12 3969132 3969441 -140313048 - AluY SINE Alu 0 308 1 685 273 55 45 chr12 3969441 3969515 -140312974 + LTR16A1 LTR ERVL 385 457 0 2367 92 3 0 chr12 3970212 3970504 -140311985 + AluSx SINE Alu 1 293 -19 279 262 75 19 chr12 3970521 3970628 -140311861 + MIR SINE MIR 118 230 -32 262 289 0 67 chr12 3970664 3970754 -140311735 - L1ME LINE L1 -476 5645 5562 1316 190 88 51 chr12 3971027 3971229 -140311260 - MLT1A1 LTR MaLR 0 365 143 2420 97 0 0 chr12 3971229 3971538 -140310951 + AluSc SINE Alu 1 309 0 1316 190 88 51 chr12 3971538 3971687 -140310802 - MLT1A1 LTR MaLR -222 143 1 1626 156 22 0 chr12 3971694 3971969 -140310520 - MLT1A1-int LTR MaLR -7 1728 1448 * 3293 165 34 0 chr12 3971966 3972523 -140309966 - MLT1A1-int LTR MaLR -1159 576 1 2494 143 14 32 chr12 3972984 3973416 -140309073 - MSTA LTR MaLR 0 428 5 391 264 121 22 chr12 3974899 3975081 -140307408 - L2 LINE L2 0 3313 3114 242 197 145 34 chr12 3975311 3975428 -140307061 + L1ME4a LINE L1 5991 6120 -1 195 301 60 0 chr12 3975804 3975887 -140306602 - L2 LINE L2 0 3313 3226 8436 117 20 21 chr12 3976387 3977689 -140304800 - HSMAR2 DNA Mariner -2 1300 1 192 306 14 14 chr12 3977771 3977843 -140304646 - L2 LINE L2 -211 3061 2990 712 254 47 25 chr12 3978678 3978914 -140303575 + MIR SINE MIR 18 258 -4 1305 185 68 16 chr12 3979183 3979491 -140302998 + MER33 DNA MER1_type 1 324 0 360 200 67 0 chr12 3979493 3979568 -140302921 + L2 LINE L2 3191 3270 -43 191 244 0 0 chr12 3980020 3980065 -140302424 + MIR SINE MIR 87 131 -77 2246 125 0 3 chr12 3980552 3980865 -140301624 + AluSq SINE Alu 1 312 -1 988 91 28 11 chr12 3980873 3980923 -140301566 + (GAAA)n Simple_repeat Simple_repeat 1 229 0 988 91 28 11 chr12 3980923 3981099 -140301390 + (GAAA)n Simple_repeat Simple_repeat 1 179 0 551 70 0 23 chr12 3981123 3981209 -140301280 + (GAAA)n Simple_repeat Simple_repeat 1 84 0 183 281 18 0 chr12 3981897 3981954 -140300535 - L2 LINE L2 -8 3264 3207 965 120 0 0 chr12 3981968 3982149 -140300340 + FLAM_C SINE Alu 1 181 0 855 172 80 31 chr12 3982156 3982319 -140300170 + FRAM SINE Alu 1 163 -13 480 211 35 0 chr12 3982429 3982543 -140299946 + L1ME4a LINE L1 5956 6073 -48 339 320 93 0 chr12 3982764 3982914 -140299575 + L2 LINE L2 3102 3265 -7 262 240 240 24 chr12 3983009 3983134 -140299355 - MIR SINE MIR -30 232 81 498 299 45 0 chr12 3983563 3983720 -140298769 + MIR3 SINE MIR 13 176 -32 261 333 29 9 chr12 3983816 3983921 -140298568 + L2 LINE L2 3134 3240 -32 1223 216 144 29 chr12 3985910 3986337 -140296152 - MLT1D LTR MaLR -1 480 27 290 246 66 72 chr12 3986359 3986526 -140295963 + MER5B DNA MER1_type 1 166 -12 470 181 116 55 chr12 3986724 3986923 -140295566 - MER20B DNA MER1_type 0 783 573 610 108 12 0 chr12 3986961 3987044 -140295445 - U6 snRNA snRNA -23 84 1 521 180 10 0 chr12 3987044 3987144 -140295345 - MER20B DNA MER1_type -168 615 515 252 143 0 0 chr12 3987548 3987590 -140294899 + (A)n Simple_repeat Simple_repeat 1 42 0 2447 81 3 0 chr12 3987592 3987890 -140294599 + AluSc SINE Alu 1 299 -10 842 170 14 0 chr12 3988468 3988615 -140293874 + L1PA16 LINE L1 6015 6163 -3 234 254 0 0 chr12 3989834 3989893 -140292596 + L2 LINE L2 3212 3270 -2 2111 132 0 3 chr12 3990139 3990434 -140292055 + AluSc SINE Alu 1 294 -15 243 320 52 11 chr12 3990445 3990623 -140291866 + MIR SINE MIR 2 145 -63 476 270 90 58 chr12 3990851 3991162 -140291327 - Charlie8 DNA MER1_type -1957 460 140 1217 232 103 31 chr12 3991215 3991672 -140290817 + L1MC4a LINE L1 5688 6177 -1631 2191 176 67 5 chr12 3992341 3992772 -140289717 + MLT1C LTR MaLR 10 467 0 271 269 0 13 chr12 3994006 3994084 -140288405 + MLT1L LTR MaLR 1 77 -538 562 247 195 24 chr12 3994243 3994494 -140287995 + MLT1L LTR MaLR 310 603 -12 360 0 0 0 chr12 3994589 3994629 -140287860 + (CA)n Simple_repeat Simple_repeat 2 41 0 2507 56 0 23 chr12 3994690 3994993 -140287496 - AluY SINE Alu -15 296 1 205 286 26 13 chr12 3995031 3995108 -140287381 - L2 LINE L2 -2 3311 3234 3757 142 23 77 chr12 3995125 3995337 -140287152 + L1MA9 LINE L1 5571 5793 -519 276 30 0 0 chr12 3995337 3995370 -140287119 + (TG)n Simple_repeat Simple_repeat 1 33 0 3757 142 23 77 chr12 3995370 3995941 -140286548 + L1MA9 LINE L1 5793 6312 0 586 256 117 9 chr12 3996213 3996443 -140286046 - MIR SINE MIR -6 256 2 557 243 75 17 chr12 3996443 3996616 -140285873 + MER5A DNA MER1_type 3 185 -4 873 335 71 33 chr12 3996783 3997638 -140284851 - L2 LINE L2 -581 2733 1846 216 181 24 96 chr12 3997635 3997718 -140284771 - L2 LINE L2 -4 3268 3192 * 786 315 64 34 chr12 3997878 3998437 -140284052 - L2 LINE L2 -277 3036 2462 23 0 0 0 chr12 3998958 3998981 -140283508 + AT_rich Low_complexity Low_complexity 1 23 0 857 262 104 29 chr12 3999122 3999899 -140282590 + L1MDa LINE L1 1030 1934 -4448 325 327 36 38 chr12 3999916 4000154 -140282335 + MIR SINE MIR 20 256 -6 2330 82 10 0 chr12 4000370 4000661 -140281828 + AluSg SINE Alu 1 294 -16 191 299 15 0 chr12 4001147 4001214 -140281275 + MIR SINE MIR 47 114 -148 586 217 31 37 chr12 4001444 4001605 -140280884 + MIR SINE MIR 10 169 -93 221 150 0 0 chr12 4002291 4002331 -140280158 - MIR SINE MIR -67 141 102 298 247 37 0 chr12 4004302 4004383 -140278106 + MIR SINE MIR 83 166 -96 310 305 98 6 chr12 4005182 4005346 -140277143 + MIR SINE MIR 36 214 -48 569 110 11 0 chr12 4005593 4005684 -140276805 + L1MB3 LINE L1 6088 6179 -4 2250 119 0 19 chr12 4006208 4006573 -140275916 + AluSp SINE Alu 1 313 0 1160 108 23 11 chr12 4006899 4007075 -140275414 + MLT1A2 LTR MaLR 1 178 -196 254 138 12 50 chr12 4007075 4007155 -140275334 + CT-rich Low_complexity Low_complexity 1 77 0 727 208 126 1 chr12 4007157 4007330 -140275159 + MLT1B LTR MaLR 163 382 -8 659 208 30 86 chr12 4007852 4008049 -140274440 + MIR SINE MIR 29 214 -48 742 275 9 13 chr12 4009693 4009922 -140272567 + MIR SINE MIR 2 229 -33 389 243 29 0 chr12 4009950 4010053 -140272436 - MER94 DNA DNA -17 117 12 189 74 0 0 chr12 4010481 4010508 -140271981 + (TTG)n Simple_repeat Simple_repeat 2 28 0 428 0 19 0 chr12 4010512 4010564 -140271925 + (TG)n Simple_repeat Simple_repeat 2 54 0 2230 120 7 0 chr12 4010642 4010951 -140271538 - AluSq SINE Alu -2 311 1 237 306 126 0 chr12 4011022 4011133 -140271356 + MIR SINE MIR 21 145 -117 663 246 33 6 chr12 4011787 4011970 -140270519 + MIR SINE MIR 48 235 -27 537 110 0 0 chr12 4013027 4013118 -140269371 + (CA)n Simple_repeat Simple_repeat 1 91 0 532 150 0 50 chr12 4013373 4013473 -140269016 + MIR3 SINE MIR 85 179 -29 29 0 0 0 chr12 4013678 4013707 -140268782 + GC_rich Low_complexity Low_complexity 1 29 0 331 263 116 37 chr12 4014442 4014632 -140267857 + L2 LINE L2 2864 3068 -204 341 206 10 69 chr12 4015009 4015111 -140267378 - MIR3 SINE MIR -10 198 103 550 250 102 10 chr12 4015238 4015434 -140267055 + MIR SINE MIR 7 220 -42 238 233 0 0 chr12 4016123 4016166 -140266323 + MER45A DNA AcHobo 1 43 -135 1340 81 0 71 chr12 4016167 4016365 -140266124 - MER1B DNA MER1_type 0 339 156 266 141 14 141 chr12 4016341 4016412 -140266077 - MER1B DNA MER1_type -275 62 1 * 561 263 8 8 chr12 4016417 4016550 -140265939 + MER45A DNA AcHobo 43 175 -3 185 295 114 0 chr12 4018530 4018635 -140263854 - MIR3 SINE MIR -22 186 70 2617 95 28 8 chr12 4019279 4019636 -140262853 - THE1B LTR MaLR 0 364 1 517 310 0 11 chr12 4019954 4020128 -140262361 + MIR SINE MIR 72 243 -19 206 170 0 21 chr12 4020135 4020182 -140262307 + GA-rich Low_complexity Low_complexity 4 49 0 388 111 0 123 chr12 4020206 4020287 -140262202 + AluJo SINE Alu 81 151 -151 2283 113 147 26 chr12 4020287 4020454 -140262035 + MSTA LTR MaLR 1 147 -281 2589 87 20 0 chr12 4020454 4020799 -140261690 + THE1A LTR MaLR 1 352 -3 2283 113 147 26 chr12 4020799 4021013 -140261476 + MSTA LTR MaLR 147 428 0 553 163 0 0 chr12 4021024 4021252 -140261237 + AluJ/FRAM SINE Alu 220 447 0 181 275 25 38 chr12 4021448 4021528 -140260961 - MIR3 SINE MIR -21 187 109 315 314 71 40 chr12 4021653 4021879 -140260610 + L1ME1 LINE L1 11 243 -6616 260 289 37 23 chr12 4022260 4022459 -140260030 + L1M4b LINE L1 1035 1345 -5602 2411 97 0 0 chr12 4022471 4022770 -140259719 + AluSg SINE Alu 1 299 -11 2190 123 0 16 chr12 4022773 4023089 -140259400 + AluY SINE Alu 1 311 0 1140 254 62 18 chr12 4023102 4023503 -140258986 + L1M4b LINE L1 1209 1627 -5232 1796 256 46 49 chr12 4023510 4024354 -140258135 + L1M4b LINE L1 2273 3114 -4024 2209 238 30 30 chr12 4024426 4025032 -140257457 + L1ME1 LINE L1 394 999 -5439 328 267 57 0 chr12 4025038 4025143 -140257346 + L1MCb LINE L1 1425 1535 -5324 276 189 0 0 chr12 4025145 4025198 -140257291 + L1ME1 LINE L1 1008 1060 -5378 2056 178 37 32 chr12 4025199 4025745 -140256744 - MLT2A2 LTR ERVL 0 554 1 3321 189 53 22 chr12 4025749 4025829 -140256660 + L1ME1 LINE L1 1064 1140 -5787 2485 67 0 0 chr12 4025829 4026126 -140256363 + AluY SINE Alu 1 297 -14 3321 189 53 22 chr12 4026126 4027029 -140255460 + L1ME1 LINE L1 1140 2075 -4852 315 75 0 0 chr12 4027029 4027069 -140255420 - MLT2B1 LTR ERVL -2 462 423 396 0 0 0 chr12 4027069 4027113 -140255376 + (CA)n Simple_repeat Simple_repeat 2 45 0 377 265 0 24 chr12 4027122 4027288 -140255201 + CT-rich Low_complexity Low_complexity 1 162 0 1897 208 88 14 chr12 4027381 4027799 -140254690 - MLT2B1 LTR ERVL -71 449 1 1712 198 275 15 chr12 4027810 4028009 -140254480 + L1ME1 LINE L1 2099 2245 -4712 2647 55 0 0 chr12 4028009 4028319 -140254170 - AluY SINE Alu -1 310 1 1712 198 275 15 chr12 4028319 4028806 -140253683 + L1ME1 LINE L1 2245 2964 -3993 1369 161 5 0 chr12 4028856 4029067 -140253422 + AluSp SINE Alu 1 212 -101 374 109 0 0 chr12 4029067 4029122 -140253367 + AluSp SINE Alu 78 132 -171 2442 80 3 0 chr12 4029124 4029423 -140253066 + AluSp SINE Alu 1 300 -13 3145 210 50 21 chr12 4029426 4030350 -140252139 + L1ME1 LINE L1 2968 3919 -3038 3049 245 41 28 chr12 4030353 4031259 -140251230 + L1ME1 LINE L1 5302 6195 -950 2507 68 0 0 chr12 4031259 4031551 -140250938 + AluY SINE Alu 1 292 -19 3049 245 41 28 chr12 4031551 4031999 -140250490 + L1ME1 LINE L1 6195 6636 -509 2328 71 3 17 chr12 4031999 4032296 -140250193 + AluY SINE Alu 1 293 -18 3049 245 41 28 chr12 4032296 4032588 -140249901 + L1ME1 LINE L1 6636 7145 0 396 271 103 51 chr12 4033473 4033765 -140248724 - L2 LINE L2 -2 3311 3005 2326 66 10 30 chr12 4034914 4035218 -140247271 + AluY SINE Alu 1 298 -13 1832 112 52 75 chr12 4035433 4035648 -140246841 + THE1C LTR MaLR 1 205 -170 207 0 0 0 chr12 4035648 4035671 -140246818 + (TC)n Simple_repeat Simple_repeat 1 23 0 1832 112 52 75 chr12 4035671 4035839 -140246650 + THE1C LTR MaLR 205 375 0 927 270 206 32 chr12 4036560 4037570 -140244919 - L2 LINE L2 -38 3275 2075 285 343 62 19 chr12 4037583 4037793 -140244696 + L2 LINE L2 2661 2879 -435 373 130 0 26 chr12 4037914 4037991 -140244498 + (GGAA)n Simple_repeat Simple_repeat 4 78 0 25 0 0 0 chr12 4039116 4039141 -140243348 + AT_rich Low_complexity Low_complexity 1 25 0 1487 209 20 29 chr12 4039184 4039533 -140242956 - L1ME2 LINE L1 -28 6136 5791 3050 213 83 18 chr12 4039539 4040299 -140242190 - L1ME1 LINE L1 -35 6200 5392 861 60 0 0 chr12 4040318 4040418 -140242071 + AluSg SINE Alu 1 100 -210 2265 112 0 3 chr12 4040466 4040769 -140241720 + AluSg SINE Alu 1 302 -8 7156 216 93 89 chr12 4040769 4041524 -140240965 - L1ME1 LINE L1 -846 5369 4619 1113 184 44 0 chr12 4041524 4041730 -140240759 - AluJb SINE Alu -14 298 84 7156 216 93 89 chr12 4041730 4042411 -140240078 - L1ME1 LINE L1 -1596 4619 3943 2444 113 88 10 chr12 4042411 4042808 -140239681 + MSTA LTR MaLR 1 428 0 7156 216 93 89 chr12 4042808 4043019 -140239470 - L1ME1 LINE L1 -2272 3943 3734 2273 103 3 19 chr12 4043019 4043329 -140239160 - AluSx SINE Alu -7 305 1 7156 216 93 89 chr12 4043329 4043766 -140238723 - L1ME1 LINE L1 -2481 3734 3300 2279 99 6 13 chr12 4043766 4044078 -140238411 - AluSq SINE Alu -3 310 1 7156 216 93 89 chr12 4044078 4044162 -140238327 - L1ME1 LINE L1 -2915 3300 3218 622 216 0 43 chr12 4044162 4044323 -140238166 - FLAM_A SINE Alu 0 133 1 7156 216 93 89 chr12 4044323 4045506 -140236983 - L1ME1 LINE L1 -2997 3218 1853 2482 72 7 3 chr12 4045506 4045813 -140236676 - AluY SINE Alu -3 308 1 7156 216 93 89 chr12 4045813 4046029 -140236460 - L1ME1 LINE L1 -4362 1853 1639 4919 139 57 4 chr12 4046021 4047058 -140235431 - L1MB1 LINE L1 0 6168 5078 * 9141 73 22 4 chr12 4047051 4048310 -140234179 - L1PA7 LINE L1 -897 5249 3969 6958 49 2 24 chr12 4048310 4049224 -140233265 + L1PA7 LINE L1 5260 6154 0 3364 188 57 6 chr12 4049226 4050017 -140232472 - L1MB1 LINE L1 -1056 5090 4260 467 301 0 7 chr12 4050364 4050507 -140231982 - L1ME1 LINE L1 -6120 276 135 1627 141 44 0 chr12 4050602 4050872 -140231617 - MSTB LTR MaLR -144 282 1 212 220 160 0 chr12 4050876 4050926 -140231563 - MIR SINE MIR -200 62 5 687 226 61 8 chr12 4052064 4052249 -140230240 + LTR50 LTR ERVL 1 176 -600 472 257 153 8 chr12 4052419 4052668 -140229821 + LTR50 LTR ERVL 503 787 -8 338 196 244 11 chr12 4052788 4052917 -140229572 + MIR SINE MIR 2 159 -49 382 178 0 0 chr12 4052922 4052995 -140229494 + MER53 DNA DNA 36 108 -81 2174 82 0 4 chr12 4053063 4053342 -140229147 + AluSx SINE Alu 1 278 -34 192 97 0 0 chr12 4053953 4053984 -140228505 + (CA)n Simple_repeat Simple_repeat 2 32 0 713 270 172 0 chr12 4055231 4055435 -140227054 - MIR SINE MIR -21 241 3 2504 81 0 0 chr12 4055499 4055809 -140226680 + AluY SINE Alu 1 310 -1 214 231 0 0 chr12 4057119 4057158 -140225331 - L3 LINE CR1 -11 1566 1528 260 290 0 0 chr12 4057249 4057311 -140225178 - L2 LINE L2 -2 3311 3250 674 310 49 13 chr12 4057496 4057722 -140224767 - L3b LINE CR1 -123 1460 1227 1673 228 68 36 chr12 4058152 4058678 -140223811 + MER74B LTR ERVL 58 600 -22 695 187 231 93 chr12 4058685 4059006 -140223483 - MLT1A1 LTR MaLR 0 365 1 407 181 37 0 chr12 4059803 4059891 -140222598 + MLT1A2 LTR MaLR 1 97 -268 * 598 161 34 1 chr12 4059883 4060006 -140222483 + MLT1A2 LTR MaLR 256 467 0 389 314 16 0 chr12 4060258 4060382 -140222107 + L3 LINE CR1 691 816 -761 396 242 87 0 chr12 4060451 4060612 -140221877 - L1ME4a LINE L1 -225 5896 5722 416 347 181 14 chr12 4060654 4061095 -140221394 + L3 LINE CR1 802 1316 -261 320 313 35 76 chr12 4061261 4061459 -140221030 + L2 LINE L2 2085 2274 -1040 289 303 123 59 chr12 4061526 4061948 -140220541 - MLT1K LTR MaLR -3 585 137 319 316 48 119 chr12 4062306 4062743 -140219746 + L2 LINE L2 2857 3262 -10 330 298 172 40 chr12 4063484 4063682 -140218807 - MIR SINE MIR -18 244 21 321 306 144 39 chr12 4064474 4064703 -140217786 + L3b LINE CR1 1304 1556 -27 2486 61 7 3 chr12 4065134 4065444 -140217045 + AluY SINE Alu 1 311 0 252 311 185 0 chr12 4065448 4065583 -140216906 + L3 LINE CR1 1345 1504 -73 278 296 144 24 chr12 4065621 4065746 -140216743 + L2 LINE L2 3133 3272 0 2197 226 42 4 chr12 4065805 4066358 -140216131 + MER90 LTR ERV1 1 574 -1 1012 223 34 13 chr12 4066489 4066722 -140215767 - MIR SINE MIR -2 260 23 526 290 22 65 chr12 4067093 4067324 -140215165 + L2 LINE L2 2976 3196 -76 265 286 29 14 chr12 4067632 4067702 -140214787 - MIR SINE MIR -104 104 34 2187 129 0 10 chr12 4071024 4071334 -140211155 + AluSx SINE Alu 1 307 -5 591 111 0 0 chr12 4071334 4071415 -140211074 + (GGAA)n Simple_repeat Simple_repeat 1 81 0 628 119 23 40 chr12 4071415 4071591 -140210898 + GA-rich Low_complexity Low_complexity 3 175 0 267 321 19 38 chr12 4071623 4071729 -140210760 - L3 LINE CR1 -52 1525 1422 210 315 71 16 chr12 4073194 4073321 -140209168 + L3b LINE CR1 1350 1483 -100 2392 88 0 7 chr12 4073515 4073821 -140208668 - AluSx SINE Alu -8 304 1 201 324 44 0 chr12 4075360 4075428 -140207061 - L3 LINE CR1 -19 1558 1488 21 36 0 0 chr12 4075878 4075906 -140206583 + AT_rich Low_complexity Low_complexity 1 28 0 705 298 187 39 chr12 4075943 4076527 -140205962 - L3 LINE CR1 -114 1463 794 669 294 216 13 chr12 4076941 4077329 -140205160 - L3 LINE CR1 -787 790 324 1368 133 0 5 chr12 4077438 4077626 -140204863 + AluSg/x SINE Alu 104 290 -22 2392 82 0 0 chr12 4077626 4077920 -140204569 + AluY SINE Alu 1 294 -17 360 302 121 13 chr12 4078538 4078687 -140203802 - MER5A DNA MER1_type -24 165 1 918 321 181 28 chr12 4078714 4080070 -140202419 + L2 LINE L2 1083 2645 -669 902 189 19 53 chr12 4080086 4080292 -140202197 - MER20 DNA MER1_type -20 199 1 509 311 28 6 chr12 4080292 4080469 -140202020 + L2 LINE L2 2660 2840 -474 193 364 116 23 chr12 4080525 4080698 -140201791 + L2 LINE L2 2788 2976 -338 300 300 12 0 chr12 4080859 4080939 -140201550 + L2 LINE L2 3228 3308 -5 255 254 61 50 chr12 4081699 4081880 -140200609 + L1MC5 LINE L1 7732 7914 -47 2667 17 0 3 chr12 4083033 4083334 -140199155 + AluY SINE Alu 1 300 -11 251 269 17 34 chr12 4084069 4084188 -140198301 - L1MC4a LINE L1 -1874 5934 5818 339 215 0 0 chr12 4084188 4084253 -140198236 + L2 LINE L2 3249 3313 0 838 287 108 25 chr12 4084254 4084350 -140198139 - L1MC4a LINE L1 -1986 5822 5735 2175 111 3 3 chr12 4084350 4084648 -140197841 + AluSx SINE Alu 1 298 -14 838 287 108 25 chr12 4084648 4084948 -140197541 - L1MC4a LINE L1 -2073 5735 5393 2177 77 3 24 chr12 4086447 4086745 -140195744 - AluY SINE Alu -19 292 1 2203 89 13 7 chr12 4088983 4089287 -140193202 + AluSg SINE Alu 1 306 -4 549 327 80 9 chr12 4090075 4090301 -140192188 + MIR SINE MIR 5 246 -16 811 240 144 0 chr12 4091363 4091592 -140190897 - MIR SINE MIR 0 262 1 293 251 18 104 chr12 4092157 4092320 -140190169 + MIR SINE MIR 79 227 -35 1484 194 17 17 chr12 4094034 4094323 -140188166 + AluJo SINE Alu 1 289 -23 2484 261 46 24 chr12 4094343 4095067 -140187422 + L1M4b LINE L1 69 816 -6043 2177 134 0 3 chr12 4095067 4095381 -140187108 + AluSq SINE Alu 1 313 0 2484 261 46 24 chr12 4095381 4095507 -140186982 + L1M4b LINE L1 816 938 -5921 227 143 0 127 chr12 4095740 4095803 -140186686 + L1M4b LINE L1 1160 1214 -5645 1883 223 44 77 chr12 4096016 4097217 -140185272 + L1M4b LINE L1 1205 2329 -4630 4209 164 11 9 chr12 4097342 4098087 -140184402 + L1MA4 LINE L1 1241 1986 -4579 3566 209 46 30 chr12 4098114 4098764 -140183725 + L1MA4 LINE L1 3344 3982 -3583 183 42 0 0 chr12 4098764 4098788 -140183701 + (CAA)n Simple_repeat Simple_repeat 1 24 0 3566 209 46 30 chr12 4098788 4099458 -140183031 + L1MA4 LINE L1 3982 4694 -2871 181 0 0 65 chr12 4099869 4099900 -140182589 + (CCG)n Simple_repeat Simple_repeat 3 31 0 9749 148 25 39 chr12 4106993 4107195 -140175294 + L1MA4 LINE L1 4668 4871 -2848 2511 75 0 3 chr12 4107195 4107503 -140174986 + AluY SINE Alu 5 311 0 9749 148 25 39 chr12 4107503 4107523 -140174966 + L1MA4 LINE L1 4871 4890 -2829 1645 193 30 3 chr12 4107523 4107823 -140174666 + AluJo SINE Alu 5 312 0 9749 148 25 39 chr12 4107823 4110675 -140171814 + L1MA4 LINE L1 4890 7707 -12 30 45 0 0 chr12 4110676 4110720 -140171769 + AT_rich Low_complexity Low_complexity 1 44 0 4661 154 35 5 chr12 4111020 4111847 -140170642 + Tigger4(Zombi) DNA MER2_type 1 852 -1879 37200 74 8 9 chr12 4111858 4117995 -140164494 + L1PA6 LINE L1 11 6143 -11 9001 127 29 14 chr12 4118003 4119520 -140162969 + Tigger4(Zombi) DNA MER2_type 835 2373 -358 2181 116 0 26 chr12 4119524 4119834 -140162655 + AluSx SINE Alu 1 302 -10 602 188 23 0 chr12 4119834 4119962 -140162527 + Tigger4(Zombi) DNA MER2_type 2542 2672 -59 936 228 46 49 chr12 4119967 4120000 -140162489 + L1MEc LINE L1 2181 2213 -4002 2104 105 14 3 chr12 4120000 4120294 -140162195 + AluSg SINE Alu 1 297 -13 936 228 46 49 chr12 4120294 4120640 -140161849 + L1MEc LINE L1 2213 2526 -3689 * 1659 240 82 99 chr12 4120639 4121370 -140161119 + MLT1A1-int LTR MaLR 410 1121 -250 1503 150 13 86 chr12 4121370 4121684 -140160805 - AluJo SINE Alu -11 301 11 1659 240 82 99 chr12 4121684 4121927 -140160562 + MLT1A1-int LTR MaLR 1121 1367 -4 623 212 36 7 chr12 4121938 4122075 -140160414 + MLT1A1 LTR MaLR 1 141 -224 1076 204 58 10 chr12 4122080 4122459 -140160030 - L1MC/D LINE L1 -743 5472 5150 2197 82 0 4 chr12 4122459 4122738 -140159751 + AluY SINE Alu 1 278 -33 345 104 68 0 chr12 4122754 4122837 -140159652 + L1M LINE L1 5337 5427 -742 1676 155 6 79 chr12 4122862 4123178 -140159311 + AluJo SINE Alu 1 293 -19 265 225 0 0 chr12 4123188 4123268 -140159221 - L1MC/D LINE L1 -1086 5129 5050 28 71 0 0 chr12 4123272 4123328 -140159161 + AT_rich Low_complexity Low_complexity 1 56 0 2498 232 125 6 chr12 4123328 4124211 -140158278 - L1MC/D LINE L1 -1159 5056 4069 1946 233 67 42 chr12 4124211 4124790 -140157699 - MER77 LTR ERV1 0 605 12 5019 250 60 9 chr12 4124798 4126725 -140155764 - L1MEc LINE L1 -2139 4076 2084 662 279 77 0 chr12 4126861 4127108 -140155381 + L2 LINE L2 1897 2162 -1152 1866 143 4 0 chr12 4128895 4129161 -140153328 + AluSx SINE Alu 1 267 -45 457 261 232 44 chr12 4129161 4129544 -140152945 + L2 LINE L2 2213 2667 -647 1808 196 70 21 chr12 4129545 4130019 -140152470 - MLT1D LTR MaLR -8 497 1 891 301 117 24 chr12 4130038 4130623 -140151866 + L2 LINE L2 2670 3295 -18 1156 210 0 13 chr12 4130640 4130869 -140151620 - Tigger7 DNA MER2_type -486 247 22 567 242 8 8 chr12 4131335 4131463 -140151026 - L2 LINE L2 -2 3311 3184 1563 168 90 9 chr12 4132008 4132330 -140150159 + MER7A DNA MER2_type 1 346 0 3604 162 56 9 chr12 4132484 4133158 -140149331 + MER39 LTR ERV1 1 706 -1 854 115 0 0 chr12 4133533 4133663 -140148826 + AluSg/x SINE Alu 172 301 -9 309 248 239 0 chr12 4134421 4134534 -140147955 + MIR SINE MIR 120 259 -3 2098 117 0 7 chr12 4134978 4135277 -140147212 - AluSx SINE Alu -15 297 1 207 178 44 0 chr12 4135582 4135627 -140146862 + (CATATA)n Simple_repeat Simple_repeat 5 51 0 238 246 172 30 chr12 4135886 4136089 -140146400 - L1 LINE L1 -1710 4436 4205 2214 112 3 0 chr12 4136223 4136519 -140145970 - AluSx SINE Alu -12 300 4 346 311 35 44 chr12 4136550 4136916 -140145573 - L1 LINE L1 -2153 3993 3631 251 209 104 15 chr12 4137386 4137453 -140145036 + Charlie8 DNA MER1_type 172 244 -2173 511 188 21 0 chr12 4137662 4137758 -140144731 - Tigger7 DNA MER2_type -2 2489 2392 * 901 244 81 8 chr12 4137757 4137796 -140144693 - Tigger7 DNA MER2_type -467 266 231 14796 122 19 30 chr12 4137796 4138016 -140144473 - Tigger1 DNA MER2_type 0 2418 2197 2337 96 0 0 chr12 4138016 4138308 -140144181 + AluSx SINE Alu 1 292 -20 14796 122 19 30 chr12 4138308 4139666 -140142823 - Tigger1 DNA MER2_type -221 2197 871 2280 103 0 10 chr12 4139666 4139976 -140142513 - AluY SINE Alu -3 308 2 14796 122 19 30 chr12 4139976 4140839 -140141650 - Tigger1 DNA MER2_type -1547 871 1 901 244 81 8 chr12 4140839 4141045 -140141444 - Tigger7 DNA MER2_type -502 231 3 1693 156 69 39 chr12 4141053 4141386 -140141103 - MER2 DNA MER2_type -1 343 1 884 255 91 98 chr12 4142881 4143308 -140139181 - L2 LINE L2 0 3313 2890 297 0 0 0 chr12 4143309 4143342 -140139147 + (GA)n Simple_repeat Simple_repeat 1 33 0 * 303 104 0 0 chr12 4143341 4143389 -140139100 + (TG)n Simple_repeat Simple_repeat 2 49 0 545 288 56 10 chr12 4143504 4143717 -140138772 - MIR SINE MIR -22 240 19 302 139 58 105 chr12 4144200 4144286 -140138203 + L1MB8 LINE L1 6095 6176 -2 979 263 3 24 chr12 4144557 4144854 -140137635 - AluY SINE Alu -9 302 12 226 333 12 0 chr12 4144948 4145032 -140137457 - AluSg/x SINE Alu -15 285 201 453 220 0 0 chr12 4145255 4145373 -140137116 + L1MEc LINE L1 996 1113 -5283 2297 91 0 29 chr12 4145379 4145687 -140136802 + AluY SINE Alu 4 302 -9 381 207 12 0 chr12 4145688 4145770 -140136719 + L1MB5 LINE L1 6082 6164 -10 717 170 15 0 chr12 4145816 4145951 -140136538 + L1PA16 LINE L1 6025 6161 -5 25 0 0 0 chr12 4145951 4145976 -140136513 + AT_rich Low_complexity Low_complexity 1 25 0 2428 58 0 19 chr12 4147120 4147428 -140135061 - AluY SINE Alu -9 302 1 646 94 0 0 chr12 4147511 4147596 -140134893 - AluSg/x SINE Alu -25 284 200 531 271 39 13 chr12 4147707 4147862 -140134627 + MIR3 SINE MIR 41 199 -9 228 339 34 0 chr12 4147927 4147986 -140134503 - L2 LINE L2 -72 3200 3140 189 231 0 0 chr12 4148842 4148881 -140133608 + L3b LINE CR1 1539 1577 -6 230 91 68 0 chr12 4149001 4149045 -140133444 + A-rich Low_complexity Low_complexity 2 48 0 641 128 220 0 chr12 4149414 4149523 -140132966 - FLAM_C SINE Alu 0 133 1 1511 158 31 8 chr12 4149694 4149976 -140132513 - AluJo SINE Alu 0 312 35 813 315 193 16 chr12 4149987 4150676 -140131813 - L3 LINE CR1 -25 1552 742 598 290 21 29 chr12 4150675 4150913 -140131576 + MIR SINE MIR 27 262 0 * 652 333 115 9 chr12 4150928 4151364 -140131125 - L3 LINE CR1 -835 742 261 501 371 55 4 chr12 4151448 4151685 -140130804 - L3 LINE CR1 -1302 275 27 449 295 20 7 chr12 4151711 4151860 -140130629 + MIR3 SINE MIR 54 204 -4 324 92 0 58 chr12 4152291 4152357 -140130132 - Alu SINE Alu 0 302 247 2282 99 0 0 chr12 4152389 4152691 -140129798 - AluY SINE Alu -9 302 1 233 304 32 70 chr12 4153627 4153725 -140128764 - L2 LINE L2 0 3313 3213 2291 89 10 23 chr12 4153725 4154029 -140128460 + AluY SINE Alu 1 300 -11 243 0 0 0 chr12 4154029 4154056 -140128433 + (TA)n Simple_repeat Simple_repeat 2 28 0 408 20 0 0 chr12 4154055 4154104 -140128385 + (GA)n Simple_repeat Simple_repeat 2 50 0 233 304 32 70 chr12 4154056 4154162 -140128327 - L2 LINE L2 -98 3215 3162 272 307 79 10 chr12 4155787 4155989 -140126500 + L2 LINE L2 1802 2017 -1297 549 55 0 0 chr12 4156104 4156177 -140126312 + (TC)n Simple_repeat Simple_repeat 1 73 0 180 295 147 11 chr12 4156181 4156276 -140126213 + L2 LINE L2 2101 2208 -1106 1747 176 3 3 chr12 4156347 4156666 -140125823 - AluJo SINE Alu 0 319 1 2929 277 77 38 chr12 4156879 4158626 -140123863 + L2 LINE L2 1493 3313 0 308 208 78 0 chr12 4159261 4159338 -140123151 - MER102a DNA MER1_type -8 322 240 409 319 22 0 chr12 4159399 4159537 -140122952 - MER102a DNA MER1_type -173 157 17 243 314 146 15 chr12 4159579 4159716 -140122773 + MIR SINE MIR 37 191 -71 190 73 49 24 chr12 4159951 4159992 -140122497 + T-rich Low_complexity Low_complexity 2 43 0 1180 350 85 20 chr12 4160528 4161476 -140121013 + L3 LINE CR1 31 1040 -537 738 282 95 16 chr12 4161561 4161926 -140120563 - L1ME4a LINE L1 -11 6093 5698 1383 289 40 13 chr12 4161936 4162413 -140120076 + L3 LINE CR1 1088 1577 0 307 310 9 26 chr12 4162592 4162708 -140119781 - MIR SINE MIR -50 212 99 469 307 82 23 chr12 4163350 4163656 -140118833 - L1ME4a LINE L1 -1299 4830 4507 812 272 113 33 chr12 4163786 4164176 -140118313 + MLT1L LTR MaLR 195 615 0 353 289 122 27 chr12 4164264 4164554 -140117935 - L1ME4a LINE L1 -1779 4350 4030 214 37 0 0 chr12 4164576 4164603 -140117886 + MER91A DNA MER1_type 37 63 -127 593 225 71 50 chr12 4164667 4164849 -140117640 - MLT1J LTR MaLR 0 511 326 266 256 83 47 chr12 4165206 4165569 -140116920 - L1ME4a LINE L1 -2933 3196 2821 903 142 103 0 chr12 4165601 4165756 -140116733 + AluSg/x SINE Alu 134 304 -6 280 309 103 15 chr12 4165777 4166371 -140116118 - L1ME4a LINE L1 -3326 2803 2138 1478 178 94 22 chr12 4166392 4166712 -140115777 + MER2 DNA MER2_type 1 343 -1 2452 58 41 0 chr12 4166884 4167177 -140115312 + AluY SINE Alu 1 305 -6 2192 106 10 0 chr12 4167352 4167644 -140114845 - AluSg1 SINE Alu -14 295 1 687 287 20 45 chr12 4167903 4168255 -140114234 - L1ME4a LINE L1 -4882 1237 895 708 263 174 57 chr12 4168291 4168751 -140113738 + MLT1H LTR MaLR 36 549 0 381 22 0 0 chr12 4169476 4169522 -140112967 + (TTA)n Simple_repeat Simple_repeat 2 47 0 2145 97 4 0 chr12 4169524 4169803 -140112686 - AluY SINE Alu -31 280 1 1059 100 0 0 chr12 4169806 4169936 -140112553 - AluSg SINE Alu -180 130 1 22 35 0 0 chr12 4170069 4170098 -140112391 + AT_rich Low_complexity Low_complexity 1 29 0 359 323 47 8 chr12 4170460 4170587 -140111902 + L2 LINE L2 3141 3272 0 2516 56 0 7 chr12 4170956 4171259 -140111230 - AluY SINE Alu -10 301 1 2388 44 3 99 chr12 4172528 4172872 -140109617 + AluY SINE Alu 1 311 0 821 191 174 4 chr12 4173006 4173277 -140109212 - Charlie5 DNA MER1_type 0 2618 2 2639 59 0 0 chr12 4173830 4174137 -140108352 + AluY SINE Alu 1 307 -4 2501 125 5 16 chr12 4174837 4175205 -140107284 + THE1B LTR MaLR 1 364 0 230 152 51 63 chr12 4175241 4175320 -140107169 - L1M4c LINE L1 -5032 1352 1275 680 101 36 34 chr12 4175881 4176041 -140106448 - MER30 DNA MER1_type 0 230 1 460 324 56 14 chr12 4176041 4176183 -140106306 + MER91A DNA MER1_type 21 168 -28 1454 182 4 29 chr12 4176259 4176560 -140105929 + AluJo SINE Alu 15 308 0 183 42 0 0 chr12 4177485 4177509 -140104980 + (CAAA)n Simple_repeat Simple_repeat 2 25 0 2366 62 0 0 chr12 4177509 4177785 -140104704 - AluY SINE Alu -35 276 1 22 0 0 0 chr12 4177913 4177935 -140104554 + AT_rich Low_complexity Low_complexity 1 22 0 436 357 20 25 chr12 4177951 4178195 -140104294 - L2 LINE L2 -108 3164 2922 368 261 8 76 chr12 4178322 4178441 -140104048 - MLT1-int LTR MaLR -233 1138 1028 285 346 15 15 chr12 4178605 4178735 -140103754 - MLT1-int LTR MaLR -478 893 764 2286 113 7 0 chr12 4179004 4179313 -140103176 - AluSx SINE Alu -1 311 1 506 267 46 41 chr12 4179414 4179609 -140102880 - MLT1-int LTR MaLR -777 594 399 2234 130 30 28 chr12 4179621 4179983 -140102506 + THE1B LTR MaLR 1 363 -1 407 288 35 40 chr12 4180030 4180228 -140102261 - MLT1-int LTR MaLR -1158 213 17 2113 132 0 0 chr12 4180676 4180979 -140101510 - AluSx SINE Alu -9 303 1 351 353 0 20 chr12 4181074 4181224 -140101265 + MIR SINE MIR 85 231 -31 297 0 0 0 chr12 4181431 4181464 -140101025 + (A)n Simple_repeat Simple_repeat 1 33 0 183 42 0 0 chr12 4183056 4183080 -140099409 + (TTTG)n Simple_repeat Simple_repeat 1 24 0 234 81 0 0 chr12 4183083 4183120 -140099369 + (T)n Simple_repeat Simple_repeat 1 37 0 247 161 195 11 chr12 4184604 4184691 -140097798 - MIR SINE MIR -99 163 61 257 191 209 29 chr12 4185245 4185350 -140097139 + MIR SINE MIR 50 173 -89 374 278 21 0 chr12 4185416 4185513 -140096976 + MIR SINE MIR 164 262 0 372 43 0 0 chr12 4185534 4185580 -140096909 + (CAT)n Simple_repeat Simple_repeat 3 48 0 192 339 83 18 chr12 4185904 4186013 -140096476 - L2 LINE L2 -19 3294 3179 293 211 0 0 chr12 4186026 4186083 -140096406 - MER5A DNA MER1_type -3 186 130 213 121 0 0 chr12 4187006 4187039 -140095450 + (TCCC)n Simple_repeat Simple_repeat 2 34 0 254 364 28 0 chr12 4188439 4188582 -140093907 + L2 LINE L2 2914 3060 -212 338 136 17 0 chr12 4188730 4188789 -140093700 - MER91 DNA MER1_type -14 126 67 3623 149 0 12 chr12 4189542 4190133 -140092356 + L1PA16 LINE L1 5582 6165 -1 408 279 107 46 chr12 4190378 4190575 -140091914 + MIR SINE MIR 20 228 -34 418 370 67 26 chr12 4191051 4191392 -140091097 + L2 LINE L2 2912 3266 -6 180 111 0 0 chr12 4192031 4192058 -140090431 + (TG)n Simple_repeat Simple_repeat 2 28 0 219 333 14 0 chr12 4193379 4193451 -140089038 + MIR3 SINE MIR 127 199 -9 324 247 0 12 chr12 4195890 4195971 -140086518 + MIR SINE MIR 69 148 -114 226 160 0 40 chr12 4196002 4196052 -140086437 + L2 LINE L2 3265 3312 -1 1123 180 52 14 chr12 4196276 4196487 -140086002 - MER20 DNA MER1_type 0 219 1 7696 167 28 46 chr12 4196654 4197717 -140084772 + L1MCa LINE L1 3 1029 -5397 2501 72 0 0 chr12 4197717 4198022 -140084467 + AluY SINE Alu 1 305 -6 7696 167 28 46 chr12 4198022 4198555 -140083934 + L1MCa LINE L1 1029 1570 -4856 3886 180 27 70 chr12 4198536 4198852 -140083637 + L1MB1 LINE L1 2256 2584 -3864 * 2147 92 0 7 chr12 4198852 4199136 -140083353 + AluY SINE Alu 1 317 0 295 29 0 0 chr12 4199136 4199171 -140083318 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 3886 180 27 70 chr12 4199171 4199937 -140082552 + L1MB1 LINE L1 2584 6341 -107 1992 34 0 8 chr12 4199939 4200177 -140082312 + AluY SINE Alu 1 236 -75 6615 186 68 34 chr12 4200195 4200999 -140081490 + L1MC3 LINE L1 5127 5902 -244 2007 111 50 0 chr12 4200999 4201279 -140081210 + AluSg SINE Alu 1 294 -16 6615 186 68 34 chr12 4201279 4202037 -140080452 + L1MC3 LINE L1 5902 5302 -844 222 37 0 0 chr12 4202037 4202064 -140080425 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 6615 186 68 34 chr12 4202064 4202171 -140080318 + L1MC3 LINE L1 5301 5403 -743 262 233 0 0 chr12 4202268 4202311 -140080178 + LTR49-int LTR ERV1 1244 1286 -5045 1044 49 0 21 chr12 4202372 4202516 -140079973 + L1MA5 LINE L1 6158 6298 -2 567 230 58 0 chr12 4203386 4203525 -140078964 + MIR SINE MIR 106 252 -10 306 304 25 50 chr12 4203612 4203773 -140078716 + L2 LINE L2 2935 3091 -181 185 324 162 14 chr12 4204691 4204839 -140077650 - L3b LINE CR1 -310 1273 1104 1546 87 0 5 chr12 4204853 4205048 -140077441 + AluY SINE Alu 102 295 -16 2913 214 98 50 chr12 4205108 4205164 -140077325 - L1MC4 LINE L1 -3 8039 7987 1923 137 21 3 chr12 4205164 4205448 -140077041 + AluJb SINE Alu 1 289 -23 2913 214 98 50 chr12 4205448 4205622 -140076867 - L1MC4 LINE L1 -55 7987 7823 2309 125 0 0 chr12 4205622 4205933 -140076556 + AluSq SINE Alu 1 311 -2 2913 214 98 50 chr12 4205933 4205989 -140076500 - L1MC4 LINE L1 -219 7823 7771 2525 64 0 0 chr12 4205989 4206285 -140076204 + AluY SINE Alu 1 296 -15 2913 214 98 50 chr12 4206285 4207011 -140075478 - L1MC4 LINE L1 -271 7771 6977 185 317 33 0 chr12 4208773 4208833 -140073656 + MIR SINE MIR 86 147 -115 295 328 8 0 chr12 4208834 4208953 -140073536 + (TA)n Simple_repeat Simple_repeat 1 120 0 245 261 31 0 chr12 4208968 4209033 -140073456 - MIR SINE MIR -115 147 81 994 339 133 6 chr12 4209127 4209970 -140072519 + L2 LINE L2 1806 2755 -559 1901 166 54 58 chr12 4209996 4210424 -140072065 + MSTB1 LTR MaLR 7 432 0 276 370 43 24 chr12 4210424 4210743 -140071746 + L2 LINE L2 2747 3069 -203 1855 156 11 3 chr12 4211431 4211714 -140070775 - AluSx SINE Alu -18 294 10 830 196 26 0 chr12 4211788 4211941 -140070548 - MER45A DNA AcHobo -1 177 21 408 239 62 18 chr12 4211987 4212100 -140070389 - L2 LINE L2 0 3313 3196 951 57 0 0 chr12 4212100 4212222 -140070267 + (TTCC)n Simple_repeat Simple_repeat 3 124 0 354 68 0 0 chr12 4212222 4212266 -140070223 - Alu SINE Alu -18 284 241 2136 108 4 0 chr12 4212294 4212596 -140069893 - AluSg SINE Alu 0 304 2 2456 151 66 11 chr12 4212739 4213176 -140069313 + LOR1b LTR ERV1 1 461 0 203 293 0 24 chr12 4214013 4214095 -140068394 + CT-rich Low_complexity Low_complexity 1 80 0 224 0 0 61 chr12 4214372 4214405 -140068084 + (CAAAA)n Simple_repeat Simple_repeat 2 32 0 187 388 70 0 chr12 4215424 4215553 -140066936 + L2 LINE L2 2555 2692 -622 855 297 93 41 chr12 4215554 4215606 -140066883 - L1MEd LINE L1 -824 1666 1618 991 182 41 45 chr12 4215606 4215654 -140066835 - MER20 DNA MER1_type 0 219 172 2685 32 0 3 chr12 4215654 4215964 -140066525 - AluY SINE Alu -2 309 1 991 182 41 45 chr12 4215964 4216135 -140066354 - MER20 DNA MER1_type -47 172 1 855 297 93 41 chr12 4216135 4217276 -140065213 - L1MEd LINE L1 -872 1618 538 2166 106 6 41 chr12 4217276 4217596 -140064893 - AluSc SINE Alu 0 309 1 855 297 93 41 chr12 4217596 4217655 -140064834 - L1MEd LINE L1 -1952 538 1610 1929 163 10 0 chr12 4217655 4217956 -140064533 - AluJo SINE Alu -8 304 1 855 297 93 41 chr12 4217956 4218895 -140063594 - L1MEd LINE L1 -879 1611 723 231 119 0 0 chr12 4218918 4218960 -140063529 - AluJb SINE Alu -2 300 259 1330 176 0 5 chr12 4218961 4219183 -140063306 - AluJb SINE Alu -91 221 1 712 317 67 70 chr12 4219263 4219668 -140062821 - L1MEd LINE L1 -5446 673 269 2601 53 0 3 chr12 4219668 4219969 -140062520 - AluY SINE Alu -11 300 1 712 317 67 70 chr12 4219969 4220232 -140062257 - L1MEd LINE L1 -5850 269 7 2395 93 0 0 chr12 4220331 4220632 -140061857 + AluSp SINE Alu 1 301 -12 231 250 83 0 chr12 4221007 4221067 -140061422 + L2 LINE L2 3187 3251 -21 1967 132 3 14 chr12 4221272 4221561 -140060928 - AluSx SINE Alu -26 286 1 2702 75 20 0 chr12 4221817 4222165 -140060324 - THE1A LTR MaLR 0 355 1 306 125 0 0 chr12 4222365 4222413 -140060076 + (TCCA)n Simple_repeat Simple_repeat 1 48 0 243 232 0 0 chr12 4222419 4222475 -140060014 - L2 LINE L2 0 3272 3217 2372 101 0 3 chr12 4222517 4222825 -140059664 + AluSg SINE Alu 1 307 -3 215 288 14 27 chr12 4222923 4222996 -140059493 - L2 LINE L2 0 3313 3242 201 182 0 0 chr12 4223117 4223150 -140059339 + (TAAA)n Simple_repeat Simple_repeat 1 33 0 195 348 58 0 chr12 4224567 4224636 -140057853 + L2 LINE L2 3138 3210 -62 328 264 0 36 chr12 4225467 4225577 -140056912 + MIR3 SINE MIR 82 187 -21 * 349 208 52 42 chr12 4225574 4225670 -140056819 + L2 LINE L2 3176 3272 0 208 238 75 12 chr12 4225713 4225793 -140056696 + MIR SINE MIR 36 120 -88 * 354 186 35 23 chr12 4225788 4225874 -140056615 - MIR SINE MIR -87 121 35 691 272 41 0 chr12 4226540 4226735 -140055754 + MIR SINE MIR 53 255 -7 207 244 0 0 chr12 4226904 4226949 -140055540 - MIR3 SINE MIR -50 158 114 544 222 20 118 chr12 4227028 4227154 -140055335 + MIR SINE MIR 63 200 -62 234 0 0 0 chr12 4227154 4227180 -140055309 + (TA)n Simple_repeat Simple_repeat 2 27 0 204 40 0 0 chr12 4227185 4227210 -140055279 + (CA)n Simple_repeat Simple_repeat 2 26 0 544 222 20 118 chr12 4227210 4227226 -140055263 + MIR SINE MIR 204 220 -42 1632 177 52 4 chr12 4227226 4227497 -140054992 + AluJo SINE Alu 1 284 -28 544 222 20 118 chr12 4227497 4227567 -140054922 + MIR SINE MIR 220 262 0 181 288 136 8 chr12 4228504 4228629 -140053860 + L2 LINE L2 3168 3308 -5 492 280 71 6 chr12 4228789 4228957 -140053532 + MLT1J2 LTR MaLR 34 212 -238 414 285 103 12 chr12 4229162 4229327 -140053162 - MIR3 SINE MIR -1 207 28 766 241 27 5 chr12 4230171 4230358 -140052131 - MIR SINE MIR -53 209 19 2261 61 37 31 chr12 4230468 4230762 -140051727 + AluY SINE Alu 1 296 -15 2183 110 3 3 chr12 4232723 4233015 -140049474 + AluSc SINE Alu 6 297 -12 2565 60 0 0 chr12 4233187 4233488 -140049001 - AluSc SINE Alu -8 301 1 1787 209 16 16 chr12 4234355 4234729 -140047760 + MLT1A2 LTR MaLR 1 374 0 377 236 9 28 chr12 4234902 4235008 -140047481 + L1MC5 LINE L1 7814 7917 -44 2161 99 41 0 chr12 4235175 4235467 -140047022 - AluSc SINE Alu -5 304 1 612 323 66 30 chr12 4235737 4236200 -140046289 - L2 LINE L2 -91 3222 2745 21 0 0 0 chr12 4236375 4236396 -140046093 + AT_rich Low_complexity Low_complexity 1 21 0 893 128 0 0 chr12 4236573 4236698 -140045791 + AluSg/x SINE Alu 176 300 -12 652 233 121 9 chr12 4237956 4238036 -140044453 + MER58 DNA MER1_type 1 71 -2349 2364 88 0 0 chr12 4238036 4238333 -140044156 + AluSg1 SINE Alu 1 297 -12 652 233 121 9 chr12 4238333 4238556 -140043933 + MER58 DNA MER1_type 71 2420 0 536 320 10 0 chr12 4238784 4238984 -140043505 + MIR SINE MIR 40 241 -21 291 278 53 30 chr12 4239894 4240027 -140042462 + MIR3 SINE MIR 62 197 -11 2233 103 3 7 chr12 4241221 4241523 -140040966 + AluSg SINE Alu 1 301 -9 2238 97 0 3 chr12 4241774 4242064 -140040425 - AluSq SINE Alu -15 298 10 397 213 25 0 chr12 4242095 4242175 -140040314 + L2 LINE L2 3232 3313 0 430 313 119 17 chr12 4242301 4242537 -140039952 - LTR16A LTR ERVL 0 457 196 2708 40 0 0 chr12 4242855 4243158 -140039331 - AluY SINE Alu -8 303 1 2259 110 0 10 chr12 4243164 4243474 -140039015 - AluSc SINE Alu -2 307 1 260 281 45 56 chr12 4243505 4243594 -140038895 - MLT1K LTR MaLR -411 177 90 207 204 0 0 chr12 4244273 4244317 -140038172 + GA-rich Low_complexity Low_complexity 2 45 0 2350 56 0 28 chr12 4244567 4244900 -140037589 + AluY SINE Alu 1 325 0 202 219 0 0 chr12 4244960 4245001 -140037488 - MIR3 SINE MIR -49 159 119 3875 235 57 67 chr12 4245001 4246103 -140036386 + L1MEc LINE L1 18 1130 -5266 2140 125 3 0 chr12 4246103 4246400 -140036089 + AluSq SINE Alu 4 301 -12 3875 235 57 67 chr12 4246400 4246694 -140035795 + L1MEc LINE L1 1130 1425 -4971 2367 96 0 3 chr12 4246694 4246996 -140035493 + AluY SINE Alu 1 301 -10 3875 235 57 67 chr12 4246996 4247021 -140035468 + L1MEc LINE L1 1425 1449 -4947 1703 182 21 3 chr12 4247021 4247307 -140035182 + AluJo SINE Alu 1 291 -21 3875 235 57 67 chr12 4247307 4247387 -140035102 + L1MEc LINE L1 1449 1506 -4890 709 89 0 0 chr12 4247523 4247613 -140034876 - AluY SINE Alu -220 91 2 279 222 14 14 chr12 4247614 4247686 -140034803 + L1MEc LINE L1 1510 1581 -4634 2040 144 0 10 chr12 4247686 4247999 -140034490 - AluSx SINE Alu -2 310 1 905 105 48 0 chr12 4248005 4248129 -140034360 + AluSg/x SINE Alu 162 291 -19 1819 245 103 40 chr12 4248130 4248665 -140033824 + L1MEc LINE L1 1651 2151 -4064 2056 125 3 3 chr12 4248665 4248960 -140033529 + AluSc SINE Alu 1 295 -14 1819 245 103 40 chr12 4248960 4249590 -140032899 + L1MEc LINE L1 2151 2889 -3326 637 206 103 122 chr12 4249569 4249889 -140032600 + L1M4 LINE L1 4871 5184 -1031 * 32 43 0 0 chr12 4250198 4250244 -140032245 + AT_rich Low_complexity Low_complexity 1 46 0 1587 108 0 0 chr12 4250264 4250487 -140032002 + L1MA4 LINE L1 5676 5898 -402 240 307 148 34 chr12 4250530 4250618 -140031871 + L2 LINE L2 3161 3258 -14 198 71 0 0 chr12 4250619 4250647 -140031842 + (GA)n Simple_repeat Simple_repeat 2 29 0 246 264 99 25 chr12 4251766 4251887 -140030602 - L3b LINE CR1 -161 1422 1293 545 217 159 13 chr12 4251991 4252148 -140030341 + MER5A DNA MER1_type 10 189 0 196 29 29 29 chr12 4253779 4253813 -140028676 + (CAAA)n Simple_repeat Simple_repeat 2 35 0 209 290 14 14 chr12 4254179 4254248 -140028241 - MIR3 SINE MIR -129 79 11 351 228 205 16 chr12 4304939 4305066 -139977423 + MIR SINE MIR 56 206 -56 3465 64 0 7 chr12 4305081 4305532 -139976957 + LTR7 LTR ERV1 1 448 -2 20843 87 25 16 chr12 4305534 4308504 -139973985 + HERVH LTR ERV1 1 2995 -4718 923 129 27 0 chr12 4308483 4308630 -139973859 + HERVH LTR ERV1 3140 3290 -4423 * 980 141 0 0 chr12 4308632 4308774 -139973715 + HERVH LTR ERV1 3503 3644 -4069 * 2631 163 0 0 chr12 4308773 4309183 -139973306 + HERVH LTR ERV1 4740 5149 -2564 1360 125 18 36 chr12 4309184 4309408 -139973081 + HERVH LTR ERV1 5600 5819 -1894 * 2596 76 45 13 chr12 4309406 4309786 -139972703 + HERVH LTR ERV1 7322 7713 0 3481 56 5 7 chr12 4309786 4310235 -139972254 + LTR7 LTR ERV1 1 448 -2 2085 102 3 0 chr12 4310280 4310600 -139971889 + AluSp SINE Alu 1 321 0 249 318 61 38 chr12 4310608 4310740 -139971749 + L2 LINE L2 3172 3306 -7 2160 99 3 0 chr12 4310959 4311261 -139971228 + AluSp SINE Alu 1 303 -10 182 314 0 0 chr12 4312703 4312754 -139969735 + MIR SINE MIR 211 261 -1 * 232 277 37 94 chr12 4312745 4312905 -139969584 - MIR SINE MIR -68 140 1 264 286 71 54 chr12 4313209 4313321 -139969168 + L2 LINE L2 3191 3304 -9 * 363 236 47 38 chr12 4313298 4313404 -139969085 - L2 LINE L2 -8 3264 3158 453 298 146 20 chr12 4314696 4315052 -139967437 + L2 LINE L2 2543 2943 -371 431 341 32 0 chr12 4315157 4315283 -139967206 + L2 LINE L2 3141 3270 -2 219 36 0 0 chr12 4315574 4315602 -139966887 + (TTTA)n Simple_repeat Simple_repeat 1 28 0 2056 87 7 0 chr12 4315602 4315877 -139966612 - AluSp SINE Alu -32 281 5 2004 98 7 23 chr12 4315965 4316272 -139966217 + AluJb SINE Alu 1 302 -10 208 286 0 16 chr12 4316274 4316337 -139966152 + (TA)n Simple_repeat Simple_repeat 2 63 0 232 229 0 0 chr12 4316518 4316566 -139965923 + L2 LINE L2 3265 3312 -1 322 283 9 44 chr12 4316715 4316828 -139965661 + MIR SINE MIR 56 164 -98 395 278 149 76 chr12 4316850 4317138 -139965351 - L2 LINE L2 -73 3199 2891 221 344 0 0 chr12 4317210 4317274 -139965215 - L2 LINE L2 -581 2733 2670 226 278 81 98 chr12 4317323 4317496 -139964993 - MIR3 SINE MIR -16 192 23 35 0 0 0 chr12 4317793 4317828 -139964661 + GC_rich Low_complexity Low_complexity 1 35 0 28 29 0 0 chr12 4317846 4317881 -139964608 + GC_rich Low_complexity Low_complexity 1 35 0 22 35 0 0 chr12 4317948 4317977 -139964512 + GC_rich Low_complexity Low_complexity 1 29 0 208 258 32 32 chr12 4318474 4318536 -139963953 + MIR3 SINE MIR 101 162 -46 * 452 210 84 56 chr12 4318527 4318670 -139963819 + MIR3 SINE MIR 16 162 -46 2361 84 0 3 chr12 4319078 4319387 -139963102 + AluSq SINE Alu 1 308 -5 483 216 45 52 chr12 4319585 4319719 -139962770 + MIR3 SINE MIR 66 198 -10 468 232 146 43 chr12 4320736 4320969 -139961520 - MER112 DNA MER1_type -3 257 1 464 340 54 17 chr12 4321448 4321689 -139960800 - L3b LINE CR1 -90 1493 1244 242 346 94 24 chr12 4322187 4322314 -139960175 - MIR3 SINE MIR -67 141 6 2108 68 32 36 chr12 4322660 4322969 -139959520 - AluY SINE Alu -3 308 1 1063 275 63 25 chr12 4323328 4323692 -139958797 - L3 LINE CR1 -4 1573 1196 353 320 116 6 chr12 4323770 4323951 -139958538 - MIR SINE MIR -16 246 46 2472 38 0 0 chr12 4325608 4325900 -139956589 + AluY SINE Alu 13 304 -7 193 298 174 37 chr12 4326002 4326163 -139956326 + L3b LINE CR1 1290 1472 -111 1689 170 0 3 chr12 4326231 4326514 -139955975 + AluJb SINE Alu 1 282 -30 475 282 192 13 chr12 4327055 4327211 -139955278 + MIR3 SINE MIR 8 191 -17 246 321 24 12 chr12 4328518 4328602 -139953887 - MIR3 SINE MIR -9 199 115 242 258 62 52 chr12 4328677 4328774 -139953715 + MIR SINE MIR 21 118 -144 1882 148 6 3 chr12 4329124 4329435 -139953054 + AluJo SINE Alu 1 312 0 924 276 65 50 chr12 4329520 4329922 -139952567 - L2 LINE L2 0 3313 2906 300 292 75 33 chr12 4330349 4330469 -139952020 + L2 LINE L2 3177 3301 -12 195 254 111 0 chr12 4330707 4330770 -139951719 + MIR SINE MIR 66 135 -127 299 337 21 0 chr12 4332368 4332463 -139950026 - MIR3 SINE MIR -17 191 95 214 274 0 0 chr12 4333589 4333651 -139948838 + T-rich Low_complexity Low_complexity 1 62 0 447 254 105 72 chr12 4334390 4334483 -139948006 + MIR SINE MIR 34 122 -140 2056 115 0 0 chr12 4334483 4334771 -139947718 - AluY SINE Alu -18 293 6 447 254 105 72 chr12 4334771 4334886 -139947603 + MIR SINE MIR 122 249 -13 400 242 66 0 chr12 4334903 4335024 -139947465 + MIR SINE MIR 28 167 -61 286 288 85 65 chr12 4335109 4335262 -139947227 + MIR3 SINE MIR 48 203 -5 680 255 85 49 chr12 4335570 4335817 -139946672 + MIR SINE MIR 7 262 0 281 273 13 13 chr12 4335968 4336045 -139946444 + MER5B DNA MER1_type 93 169 -9 361 324 14 42 chr12 4336127 4336269 -139946220 + MIR3 SINE MIR 65 202 -6 628 274 13 57 chr12 4336566 4336837 -139945652 - MIR SINE MIR 0 262 3 1175 104 245 60 chr12 4337117 4337386 -139945103 + MER33 DNA MER1_type 1 319 -5 774 207 123 6 chr12 4337391 4337570 -139944919 + MIR SINE MIR 32 231 -31 195 262 65 125 chr12 4337755 4337923 -139944566 + L2 LINE L2 3102 3259 -13 205 328 151 25 chr12 4339115 4339353 -139943136 - L3b LINE CR1 -86 1497 1230 517 270 162 7 chr12 4341119 4341267 -139941222 + MER5B DNA MER1_type 6 176 -2 252 0 0 0 chr12 4344041 4344069 -139938420 + (TCTG)n Simple_repeat Simple_repeat 4 31 0 2750 152 97 9 chr12 4344292 4344819 -139937670 - L1MD3 LINE L1 -11 7984 7412 525 205 1 19 chr12 4344819 4344930 -139937559 - MLT1F1 LTR MaLR -442 125 25 257 178 0 82 chr12 4344931 4345004 -139937485 - L1MD3 LINE L1 -895 7100 7034 1071 185 0 5 chr12 4345007 4345191 -139937298 - MLT1C LTR MaLR -1 466 284 * 1278 201 73 34 chr12 4345186 4345514 -139936975 - MLT1C LTR MaLR -120 347 7 3251 200 58 59 chr12 4345524 4345659 -139936830 - L1MD3 LINE L1 -18 6148 6869 198 0 0 0 chr12 4345659 4345681 -139936808 + (TC)n Simple_repeat Simple_repeat 1 22 0 3251 200 58 59 chr12 4345681 4346522 -139935967 - L1MD3 LINE L1 704 6870 6030 294 310 275 0 chr12 4347054 4347312 -139935177 + L2 LINE L2 2966 3294 -19 226 192 19 0 chr12 4347649 4347701 -139934788 + HAL1 LINE L1 2269 2321 -186 40 37 0 0 chr12 4347884 4347938 -139934551 + AT_rich Low_complexity Low_complexity 1 54 0 306 250 64 21 chr12 4347976 4348116 -139934373 - L1MC5 LINE L1 -99 7862 7717 315 273 0 0 chr12 4348267 4348344 -139934145 - L1MC4 LINE L1 -610 7432 7356 1224 150 134 8 chr12 4348486 4348732 -139933757 - Tigger3(Golem) DNA MER2_type 0 3029 2753 866 137 34 2 chr12 4348736 4348941 -139933548 + AluSx SINE Alu 49 302 -10 304 276 48 0 chr12 4349010 4349115 -139933374 - L1MC5 LINE L1 -895 7066 6957 3325 199 67 27 chr12 4349164 4349970 -139932519 - L1ME2 LINE L1 -9 6155 5318 * 9631 162 45 18 chr12 4349965 4352656 -139929833 - L1MC1 LINE L1 -1 6612 3995 1796 171 0 3 chr12 4352656 4352942 -139929547 - AluJb SINE Alu -27 285 1 9631 162 45 18 chr12 4352942 4356526 -139925963 - L1MC1 LINE L1 -2618 3995 5 411 213 130 0 chr12 4356506 4356614 -139925875 - L1ME2 LINE L1 -810 5336 5215 * 231 146 0 134 chr12 4356613 4356695 -139925794 - L1MC5 LINE L1 -1008 6953 6883 * 256 274 65 114 chr12 4356908 4356949 -139925540 + MARNA DNA Mariner 26 67 -519 2269 91 0 13 chr12 4356949 4357257 -139925232 - AluY SINE Alu -7 304 1 256 274 65 114 chr12 4357257 4357416 -139925073 + MARNA DNA Mariner 67 216 -370 464 298 59 43 chr12 4357438 4357693 -139924796 - MIR SINE MIR -2 260 2 249 304 51 0 chr12 4357793 4357872 -139924617 - MARNA DNA Mariner -416 170 88 2212 203 53 69 chr12 4358161 4358486 -139924003 - L1MD2 LINE L1 0 6753 6441 1892 144 7 17 chr12 4358486 4358651 -139923838 - AluJo SINE Alu -13 299 137 1957 140 10 0 chr12 4358651 4358943 -139923546 - AluSx SINE Alu -17 295 1 1892 144 7 17 chr12 4358943 4359075 -139923414 - AluJo SINE Alu -175 137 5 2212 203 53 69 chr12 4359075 4359375 -139923114 - L1MD2 LINE L1 -312 6441 6138 1486 164 19 22 chr12 4359435 4359704 -139922785 - L1MD2 LINE L1 -502 6134 5867 2057 102 19 56 chr12 4359707 4360030 -139922459 - AluY SINE Alu 0 311 1 312 194 26 17 chr12 4360045 4360131 -139922358 - L1MD2 LINE L1 0 7769 7685 1461 184 40 114 chr12 4360131 4360301 -139922188 + MLT1A2 LTR MaLR 1 182 -192 285 29 0 0 chr12 4360301 4360335 -139922154 + (TC)n Simple_repeat Simple_repeat 1 34 0 1461 184 40 114 chr12 4360335 4360379 -139922110 + MLT1A2 LTR MaLR 182 228 -146 366 23 0 0 chr12 4360379 4360422 -139922067 + (TC)n Simple_repeat Simple_repeat 1 43 0 1461 184 40 114 chr12 4360422 4360608 -139921881 + MLT1A2 LTR MaLR 228 372 -2 312 194 26 17 chr12 4360608 4361235 -139921254 - L1MD2 LINE L1 -84 7685 6243 * 6910 220 53 21 chr12 4361233 4362975 -139919514 - L1MD2 LINE L1 -743 5797 4114 8630 129 10 6 chr12 4362975 4363516 -139918973 + L1PA10 LINE L1 4102 4639 -1529 1948 131 13 35 chr12 4363516 4363807 -139918682 + AluSx SINE Alu 1 286 -26 333 0 0 0 chr12 4363807 4363844 -139918645 + (CA)n Simple_repeat Simple_repeat 2 38 0 1948 131 13 35 chr12 4363844 4363864 -139918625 + AluSx SINE Alu 286 305 -7 8630 129 10 6 chr12 4363864 4365387 -139917102 + L1PA10 LINE L1 4639 6164 -4 6910 220 53 21 chr12 4365387 4365766 -139916723 - L1MD2 LINE L1 -2426 4114 3683 2413 192 19 24 chr12 4365767 4366231 -139916258 - L1MD2 LINE L1 -6061 479 18 706 288 62 64 chr12 4367543 4367998 -139914491 - MLT1J LTR MaLR -57 454 1 308 219 133 60 chr12 4368481 4368632 -139913857 - MIR SINE MIR -62 146 11 1208 190 4 4 chr12 4368662 4368888 -139913601 - AluJb SINE Alu -6 306 81 1772 151 10 7 chr12 4368889 4369180 -139913309 - AluJo SINE Alu -20 292 1 331 270 138 46 chr12 4369202 4369354 -139913135 - MIR SINE MIR -49 213 48 325 301 136 11 chr12 4370651 4370827 -139911662 - MIR SINE MIR -27 235 38 204 261 0 0 chr12 4371895 4371941 -139910548 - L3 LINE CR1 -9 1568 1523 276 297 55 16 chr12 4372119 4372247 -139910242 - MIR SINE MIR -98 164 32 33 0 0 0 chr12 4373612 4373645 -139908844 + AT_rich Low_complexity Low_complexity 1 33 0 731 117 0 0 chr12 4373734 4373837 -139908652 + AluY SINE Alu 205 307 -4 2152 167 30 3 chr12 4373942 4374308 -139908181 + L1MB5 LINE L1 5799 6174 0 275 75 57 75 chr12 4374325 4374378 -139908111 + L1MC1 LINE L1 6281 6332 -1 291 301 135 12 chr12 4374571 4374675 -139907814 + L2 LINE L2 3071 3161 -111 2373 104 3 0 chr12 4374675 4374983 -139907506 - AluSp SINE Alu -4 309 1 291 301 135 12 chr12 4374983 4375041 -139907448 + L2 LINE L2 3161 3253 -19 265 187 13 80 chr12 4375051 4375126 -139907363 + MIR SINE MIR 56 125 -83 286 261 152 0 chr12 4375520 4375658 -139906831 - MIR SINE MIR -62 200 42 248 331 76 21 chr12 4375675 4375820 -139906669 + L3b LINE CR1 1406 1558 -25 391 264 270 6 chr12 4376424 4376587 -139905902 - MIR SINE MIR -42 220 15 1132 236 105 57 chr12 4376685 4377369 -139905120 - L1MC5 LINE L1 -36 7925 7260 363 293 30 0 chr12 4378054 4378153 -139904336 - MIR3 SINE MIR -25 183 82 1038 154 0 0 chr12 4378155 4378317 -139904172 + FRAM SINE Alu 2 163 -13 223 302 35 78 chr12 4378809 4378925 -139903564 + L2 LINE L2 3203 3313 0 428 247 69 70 chr12 4379065 4379314 -139903175 - Charlie2a DNA MER1_type -32 2830 2582 1861 176 3 3 chr12 4379314 4379621 -139902868 - AluJb SINE Alu -5 307 1 428 247 69 70 chr12 4379621 4379870 -139902619 - Charlie2a DNA MER1_type -280 2582 2274 7443 220 56 69 chr12 4379877 4381778 -139900711 + L1MD1 LINE L1 2713 4638 -1591 1281 190 138 30 chr12 4381778 4382047 -139900442 + AluJo SINE Alu 5 302 0 7443 220 56 69 chr12 4382047 4382058 -139900431 + L1MD1 LINE L1 4638 4648 -1581 2549 65 0 0 chr12 4382058 4382365 -139900124 + AluY SINE Alu 1 307 -4 7443 220 56 69 chr12 4382365 4382722 -139899767 + L1MD1 LINE L1 4648 5008 -1221 381 43 0 0 chr12 4382722 4382769 -139899720 + (TTCC)n Simple_repeat Simple_repeat 2 48 0 2228 89 3 0 chr12 4382769 4383051 -139899438 - AluSp SINE Alu -30 283 1 7443 220 56 69 chr12 4383051 4383230 -139899259 + L1MD1 LINE L1 5007 5187 -1042 2223 116 0 3 chr12 4383230 4383540 -139898949 + AluSc SINE Alu 1 309 0 7443 220 56 69 chr12 4383540 4383908 -139898581 + L1MD1 LINE L1 5187 5486 -743 5047 196 25 63 chr12 4386327 4387563 -139894926 + L1MC2 LINE L1 4084 5365 -979 2078 80 29 0 chr12 4387563 4387861 -139894628 + AluY SINE Alu 1 306 0 5047 196 25 63 chr12 4387861 4388120 -139894369 + L1MC2 LINE L1 5365 5632 -712 825 142 0 8 chr12 4388120 4388254 -139894235 - L1PB2 LINE L1 -4 6147 6015 5047 196 25 63 chr12 4388254 4389102 -139893387 + L1MC2 LINE L1 5632 6343 -1 2187 86 0 4 chr12 4389127 4389405 -139893084 - AluSg SINE Alu -20 290 14 2764 225 60 3 chr12 4389426 4390097 -139892392 + L1MC3 LINE L1 7075 7783 -2 3255 172 17 32 chr12 4390106 4390739 -139891750 + L1MD1 LINE L1 5475 6098 -144 253 204 0 0 chr12 4390739 4390788 -139891701 + AluJ/monomer SINE Alu 257 305 -3 1945 73 4 4 chr12 4390802 4391050 -139891439 - AluSp SINE Alu -17 296 49 2930 199 56 38 chr12 4391052 4391076 -139891413 - Charlie2a DNA MER1_type -610 2252 2230 2241 75 0 0 chr12 4391076 4391382 -139891107 - AluY SINE Alu 0 306 1 2930 199 56 38 chr12 4391382 4392086 -139890403 - Charlie2a DNA MER1_type -632 2230 1506 2279 118 0 0 chr12 4392086 4392390 -139890099 - AluSc SINE Alu -5 304 1 2930 199 56 38 chr12 4392390 4392427 -139890062 - Charlie2a DNA MER1_type -1356 1506 1471 410 53 18 0 chr12 4392483 4392540 -139889949 + (TAGA)n Simple_repeat Simple_repeat 1 58 0 1583 268 116 38 chr12 4392561 4393173 -139889316 - Charlie2b DNA MER1_type -2117 665 6 183 80 0 0 chr12 4394453 4394478 -139888011 + (A)n Simple_repeat Simple_repeat 1 25 0 2047 135 0 3 chr12 4394483 4394780 -139887709 + AluJo SINE Alu 3 298 -14 429 311 62 6 chr12 4395338 4395499 -139886990 - MIR SINE MIR -1 261 92 298 299 146 14 chr12 4395531 4395675 -139886814 + L3 LINE CR1 1395 1557 -20 191 245 0 20 chr12 4395695 4395744 -139886745 - L2 LINE L2 -3 3269 3222 209 256 0 13 chr12 4395764 4395842 -139886647 + GA-rich Low_complexity Low_complexity 3 79 0 27 29 0 0 chr12 4395857 4395891 -139886598 + AT_rich Low_complexity Low_complexity 1 34 0 726 179 0 83 chr12 4396049 4396194 -139886295 - FLAM_C SINE Alu 0 133 1 258 278 179 46 chr12 4396783 4396883 -139885606 - L2 LINE L2 -231 3041 2956 1841 140 3 42 chr12 4396883 4397190 -139885299 + AluJo SINE Alu 2 296 -16 258 278 179 46 chr12 4397190 4397438 -139885051 - L2 LINE L2 -316 2956 2636 1749 160 91 3 chr12 4398467 4398798 -139883691 + MER46B DNA MER2_type 1 235 -1 183 200 0 0 chr12 4398843 4398873 -139883616 - L2 LINE L2 -86 3186 3157 603 247 89 32 chr12 4399026 4399273 -139883216 + L2 LINE L2 3050 3310 -3 332 310 70 10 chr12 4399295 4399395 -139883094 + L2 LINE L2 3116 3221 -51 309 51 0 0 chr12 4399418 4399457 -139883032 + (TGAA)n Simple_repeat Simple_repeat 1 39 0 235 274 0 0 chr12 4399487 4399538 -139882951 - L2 LINE L2 -12 3260 3210 273 289 20 94 chr12 4400103 4400252 -139882237 - MIR3 SINE MIR -3 205 68 421 234 52 16 chr12 4400474 4400619 -139881870 + L1ME3 LINE L1 5987 6132 -38 1225 35 0 0 chr12 4400709 4400850 -139881639 + AluY SINE Alu 165 305 -6 2552 62 0 3 chr12 4400868 4401174 -139881315 + AluSc SINE Alu 1 305 -4 276 133 44 0 chr12 4401178 4401223 -139881266 - MIR SINE MIR -96 166 120 213 232 74 42 chr12 4401238 4401333 -139881156 - MIR SINE MIR -4 258 161 861 106 50 7 chr12 4401370 4401511 -139880978 - L1MB3 LINE L1 -3 6180 6034 368 299 0 0 chr12 4401513 4401610 -139880879 + MIR SINE MIR 49 145 -117 3301 138 2 8 chr12 4401638 4402118 -139880371 + MER1A DNA MER1_type 53 529 0 381 375 40 0 chr12 4402815 4402991 -139879498 + MIR SINE MIR 49 231 -31 270 273 39 26 chr12 4404087 4404164 -139878325 - MIR SINE MIR -98 164 87 189 0 0 0 chr12 4404848 4404869 -139877620 + (TG)n Simple_repeat Simple_repeat 1 21 0 249 119 0 0 chr12 4405067 4405109 -139877380 + (TC)n Simple_repeat Simple_repeat 1 42 0 225 128 0 0 chr12 4405108 4405155 -139877334 + (CA)n Simple_repeat Simple_repeat 1 47 0 * 218 290 70 50 chr12 4405428 4405528 -139876961 + MIR SINE MIR 129 230 -32 279 193 35 0 chr12 4405539 4405596 -139876893 - L3 LINE CR1 -119 1458 1400 287 167 0 0 chr12 4406150 4406198 -139876291 - MIR SINE MIR -108 154 107 656 289 128 5 chr12 4407454 4407672 -139874817 - MIR SINE MIR -1 261 17 209 222 0 19 chr12 4407764 4407818 -139874671 + (TTCA)n Simple_repeat Simple_repeat 4 56 0 502 295 47 37 chr12 4408544 4408734 -139873755 + MIR SINE MIR 51 242 -20 2335 79 0 0 chr12 4408868 4409172 -139873317 - AluSq SINE Alu -5 308 5 2355 51 3 26 chr12 4409184 4409495 -139872994 - AluY SINE Alu -7 304 1 198 0 0 0 chr12 4409661 4409683 -139872806 + (CA)n Simple_repeat Simple_repeat 1 22 0 394 275 84 28 chr12 4410518 4410660 -139871829 - MIR SINE MIR -93 169 20 2337 48 10 0 chr12 4410825 4411117 -139871372 - AluSg SINE Alu -15 295 1 2152 115 0 0 chr12 4411541 4411853 -139870636 + AluSq SINE Alu 1 312 -1 2899 207 12 14 chr12 4411869 4412581 -139869908 - L1M LINE L1 -737 5429 4720 3939 292 66 52 chr12 4412585 4412877 -139869612 - L1ME3A LINE L1 -232 6174 5888 2450 47 0 3 chr12 4412877 4413174 -139869315 + AluY SINE Alu 1 296 -15 3939 292 66 52 chr12 4413174 4414518 -139867971 - L1ME3A LINE L1 -518 5888 4564 1773 179 0 0 chr12 4414518 4414814 -139867675 - AluJo SINE Alu -16 296 1 3939 292 66 52 chr12 4414814 4415035 -139867454 - L1ME3A LINE L1 -1842 4564 4348 234 62 0 0 chr12 4415035 4415067 -139867422 + (TG)n Simple_repeat Simple_repeat 1 32 0 3939 292 66 52 chr12 4415067 4415585 -139866904 - L1ME3A LINE L1 -2058 4348 3839 2117 103 3 0 chr12 4415585 4415901 -139866588 - AluSp SINE Alu 0 313 1 3939 292 66 52 chr12 4415901 4416117 -139866372 - L1ME3A LINE L1 -2567 3839 3627 1934 205 55 26 chr12 4416117 4416480 -139866009 - MLT1C LTR MaLR 0 467 116 233 0 62 0 chr12 4416480 4416512 -139865977 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 1989 111 0 11 chr12 4416515 4416795 -139865694 - AluSx SINE Alu -31 281 5 1934 205 55 26 chr12 4416795 4416881 -139865608 - MLT1C LTR MaLR -352 115 1 3939 292 66 52 chr12 4416881 4417890 -139864599 - L1ME3A LINE L1 -2779 3627 2518 1461 187 33 0 chr12 4417890 4418190 -139864299 - AluJb SINE Alu -2 310 1 3939 292 66 52 chr12 4418190 4418239 -139864250 - L1ME3A LINE L1 -3888 2518 2471 231 205 60 24 chr12 4418323 4418406 -139864083 - L1ME3A LINE L1 -3967 2417 2332 318 285 44 3 chr12 4418739 4418886 -139863603 - L1ME3A LINE L1 -4641 1922 1620 677 199 29 15 chr12 4418898 4419034 -139863455 - LTR40a LTR ERVL -379 140 3 187 313 31 0 chr12 4419111 4419175 -139863314 - MIR SINE MIR -124 138 73 664 230 23 40 chr12 4419785 4419959 -139862530 - MER5A DNA MER1_type -5 184 14 520 320 11 17 chr12 4421872 4422053 -139860436 - MIR3 SINE MIR -10 198 19 2121 75 3 3 chr12 4422068 4422381 -139860108 - AluY SINE Alu 0 313 1 183 80 0 0 chr12 4422662 4422687 -139859802 + (TTTC)n Simple_repeat Simple_repeat 4 28 0 293 68 23 0 chr12 4422931 4422975 -139859514 + (TG)n Simple_repeat Simple_repeat 2 46 0 254 296 71 31 chr12 4423724 4423822 -139858667 - MIR SINE MIR -113 149 48 182 231 0 0 chr12 4423906 4423945 -139858544 - L2 LINE L2 -97 3175 3137 187 307 53 40 chr12 4424037 4424112 -139858377 - MIR SINE MIR -101 161 86 1694 131 78 11 chr12 4424352 4424634 -139857855 + AluJb SINE Alu 1 301 -11 7498 48 0 0 chr12 4424929 4425830 -139856659 - L1PA5 LINE L1 0 6154 5254 236 319 99 7 chr12 4425851 4425992 -139856497 + L3 LINE CR1 1418 1571 -6 250 238 88 62 chr12 4426293 4426373 -139856116 + L2 LINE L2 3214 3295 -18 1376 194 3 31 chr12 4426383 4426672 -139855817 + AluJo SINE Alu 1 281 -31 325 239 37 30 chr12 4426985 4427119 -139855370 + CT-rich Low_complexity Low_complexity 2 136 0 282 277 107 13 chr12 4427780 4427909 -139854580 - L3b LINE CR1 -6 1571 1437 359 235 0 0 chr12 4428148 4428216 -139854273 + MIR SINE MIR 194 261 -1 417 250 45 30 chr12 4428478 4428610 -139853879 + MER94 DNA DNA 1 134 0 1673 169 3 3 chr12 4428688 4428972 -139853517 - AluJb SINE Alu -14 298 15 250 327 37 68 chr12 4429053 4429215 -139853274 + MER5A DNA MER1_type 33 189 0 214 246 77 15 chr12 4429290 4429355 -139853134 - MIR SINE MIR -93 115 47 2134 109 3 3 chr12 4429920 4430232 -139852257 + AluSx SINE Alu 1 312 0 287 194 0 16 chr12 4430530 4430592 -139851897 - MIR SINE MIR -139 123 63 300 294 33 11 chr12 4430778 4430870 -139851619 - MIR3 SINE MIR -4 204 111 1189 238 188 22 chr12 4430898 4431435 -139851054 + Charlie2b DNA MER1_type 44 669 -2113 1198 241 126 18 chr12 4431521 4431741 -139850748 + L2 LINE L2 597 792 -2522 2028 91 24 7 chr12 4431741 4432028 -139850461 - AluSg SINE Alu -18 292 1 1198 241 126 18 chr12 4432028 4432260 -139850229 + L2 LINE L2 792 1098 -2216 420 281 125 0 chr12 4433163 4433323 -139849166 + MIR SINE MIR 49 228 -34 242 182 81 61 chr12 4433466 4433565 -139848924 + MIR SINE MIR 42 142 -66 295 278 160 36 chr12 4433941 4434121 -139848368 + MIR3 SINE MIR 5 196 -62 495 260 77 46 chr12 4434245 4434441 -139848048 - MIR SINE MIR -1 261 60 694 161 161 21 chr12 4434610 4434753 -139847736 - FRAM SINE Alu -12 164 2 245 355 21 0 chr12 4434990 4435083 -139847406 - MIR3 SINE MIR -16 192 98 2273 39 7 7 chr12 4435927 4436260 -139846229 - AluY SINE Alu 0 333 1 6573 84 14 2 chr12 4436267 4436935 -139845554 - L1PA14 LINE L1 0 6161 5478 2221 83 7 10 chr12 4436935 4437237 -139845252 - AluSp SINE Alu -12 301 1 6573 84 14 2 chr12 4437237 4437465 -139845024 - L1PA14 LINE L1 -683 5478 5254 2236 91 0 3 chr12 4437698 4437995 -139844494 + AluSq SINE Alu 1 296 -17 401 241 9 0 chr12 4438005 4438117 -139844372 + CT-rich Low_complexity Low_complexity 3 115 0 187 182 0 0 chr12 4438123 4438156 -139844333 - L2 LINE L2 -13 3300 3268 238 257 27 14 chr12 4438865 4438939 -139843550 + L1ME LINE L1 5845 5919 -202 2120 112 0 0 chr12 4439417 4439720 -139842769 - AluSx SINE Alu -9 303 1 316 214 36 116 chr12 4440429 4440541 -139841948 + MIR SINE MIR 84 186 -76 5201 158 56 27 chr12 4440541 4440593 -139841896 + L1MC2 LINE L1 5293 5342 -1002 954 107 15 0 chr12 4440593 4440724 -139841765 + FLAM_C SINE Alu 1 133 0 5201 158 56 27 chr12 4440724 4441084 -139841405 + L1MC2 LINE L1 5342 5690 -654 1861 123 18 0 chr12 4441084 4441388 -139841101 - AluSx SINE Alu 0 309 1 5201 158 56 27 chr12 4441388 4441995 -139840494 + L1MC2 LINE L1 5690 6343 -1 300 186 14 86 chr12 4442007 4442077 -139840412 + MIR3 SINE MIR 91 155 -53 329 157 0 0 chr12 4442084 4442135 -139840354 - MER3 DNA MER1_type -127 82 32 311 248 44 35 chr12 4442135 4442159 -139840330 - L1MC4 LINE L1 -447 7595 7573 2135 102 0 10 chr12 4442159 4442463 -139840026 - AluSc SINE Alu -8 301 1 311 248 44 35 chr12 4442463 4442551 -139839938 - L1MC4 LINE L1 -469 7573 7482 2324 81 0 0 chr12 4444241 4444538 -139837951 + AluSp SINE Alu 1 297 -16 1906 117 31 3 chr12 4444550 4444841 -139837648 + AluSq SINE Alu 1 299 -14 207 0 0 0 chr12 4444979 4445002 -139837487 + (T)n Simple_repeat Simple_repeat 1 23 0 861 143 75 7 chr12 4445630 4445777 -139836712 - FRAM SINE Alu -19 157 1 988 196 103 18 chr12 4445777 4446006 -139836483 + L1ME3A LINE L1 5863 6122 -48 2203 107 0 3 chr12 4446006 4446316 -139836173 + AluSc SINE Alu 1 309 0 988 196 103 18 chr12 4446316 4446367 -139836122 + L1ME3A LINE L1 6122 6167 -3 729 136 8 8 chr12 4446373 4446491 -139835998 + FLAM_C SINE Alu 17 134 -9 1203 224 98 67 chr12 4446723 4447173 -139835316 + MLT1C LTR MaLR 1 464 -3 2128 102 3 0 chr12 4447705 4448039 -139834450 - AluSx SINE Alu 0 335 1 1035 221 78 11 chr12 4448501 4448782 -139833707 + Charlie2b DNA MER1_type 370 669 -2113 2340 178 174 47 chr12 4448816 4449129 -139833360 + Charlie2a DNA MER1_type 1472 1744 -1118 2197 89 3 0 chr12 4449129 4449421 -139833068 - AluSg SINE Alu -17 293 1 2340 178 174 47 chr12 4449421 4449725 -139832764 + Charlie2a DNA MER1_type 1744 2008 -854 2451 47 3 0 chr12 4449725 4450024 -139832465 + AluY SINE Alu 1 300 -11 2340 178 174 47 chr12 4450024 4450234 -139832255 + Charlie2a DNA MER1_type 2008 2190 -672 1502 126 29 8 chr12 4450234 4450473 -139832016 - AluJo SINE Alu -9 303 60 2340 178 174 47 chr12 4450473 4450745 -139831744 + Charlie2a DNA MER1_type 2190 2778 -84 204 40 0 0 chr12 4451076 4451101 -139831388 + (T)n Simple_repeat Simple_repeat 1 25 0 207 270 190 35 chr12 4452656 4452830 -139829659 + L2 LINE L2 2984 3184 -129 2187 125 0 0 chr12 4453075 4453370 -139829119 - AluSx SINE Alu -17 295 1 311 189 42 11 chr12 4453377 4453472 -139829017 + (TA)n Simple_repeat Simple_repeat 1 98 0 190 343 67 0 chr12 4453488 4453593 -139828896 + L2 LINE L2 3136 3247 -25 404 282 0 9 chr12 4453818 4453928 -139828561 - L1M4 LINE L1 -3575 2571 2463 240 294 42 25 chr12 4454598 4454717 -139827772 - L2 LINE L2 -210 3062 2942 705 227 167 32 chr12 4454770 4455021 -139827468 - Charlie8 DNA MER1_type -2132 285 1 1367 330 104 28 chr12 4455128 4455624 -139826865 - L2 LINE L2 -556 2758 2301 2137 139 0 3 chr12 4455624 4455926 -139826563 + AluSx SINE Alu 1 301 -11 1367 330 104 28 chr12 4455926 4456574 -139825915 - L2 LINE L2 -1013 2301 1527 223 241 20 0 chr12 4456881 4456946 -139825543 + MIR SINE MIR 17 81 -133 1862 123 0 7 chr12 4457002 4457271 -139825218 + AluJb SINE Alu 39 305 -7 2334 136 8 0 chr12 4458105 4458453 -139824036 - L1PB4 LINE L1 -13 6143 5790 270 0 0 0 chr12 4458453 4458483 -139824006 + (TG)n Simple_repeat Simple_repeat 2 31 0 2334 136 8 0 chr12 4458483 4458501 -139823988 - L1PB4 LINE L1 -366 5790 5774 43 88 0 0 chr12 4458508 4458621 -139823868 + AT_rich Low_complexity Low_complexity 1 113 0 24 32 0 0 chr12 4458676 4458707 -139823782 + AT_rich Low_complexity Low_complexity 1 31 0 477 88 32 40 chr12 4458788 4458913 -139823576 + (TA)n Simple_repeat Simple_repeat 1 124 0 252 269 14 21 chr12 4458916 4459057 -139823432 + (TTA)n Simple_repeat Simple_repeat 3 142 0 348 133 0 0 chr12 4459088 4459148 -139823341 + (TA)n Simple_repeat Simple_repeat 1 60 0 713 145 17 29 chr12 4459161 4459312 -139823177 - L1PB4 LINE L1 -375 5781 5645 1579 243 207 16 chr12 4459582 4460075 -139822414 - MLT1E LTR MaLR -6 587 1 390 276 92 15 chr12 4460198 4460394 -139822095 - MIR SINE MIR -28 234 24 418 273 0 18 chr12 4460540 4460650 -139821839 - MLT1J LTR MaLR -85 426 319 2228 172 46 0 chr12 4460901 4461314 -139821175 + MSTB1 LTR MaLR 1 432 0 405 260 87 119 chr12 4461364 4461464 -139821025 - HAL1b LINE L1 -461 887 785 2364 88 0 7 chr12 4461464 4461760 -139820729 - AluSp SINE Alu -19 294 1 405 260 87 119 chr12 4461760 4461897 -139820592 - HAL1b LINE L1 -563 785 645 336 192 26 0 chr12 4461897 4461975 -139820514 + MER116 DNA Mariner 1 80 0 405 260 87 119 chr12 4461975 4462382 -139820107 - HAL1b LINE L1 -703 645 263 2155 80 0 0 chr12 4462398 4462688 -139819801 + AluSg1 SINE Alu 18 307 0 349 43 43 29 chr12 4462891 4462961 -139819528 + (TAGA)n Simple_repeat Simple_repeat 1 71 0 390 247 51 51 chr12 4463050 4463228 -139819261 + L1MC4a LINE L1 5741 5918 -1890 1660 147 110 7 chr12 4463386 4463659 -139818830 - AluSx SINE Alu -11 301 1 1794 281 90 68 chr12 4463781 4464274 -139818215 + L1MEc LINE L1 35 516 -5880 2141 117 0 43 chr12 4464274 4464600 -139817889 + AluSx SINE Alu 1 312 0 2360 107 0 0 chr12 4464610 4464918 -139817571 + AluSx SINE Alu 1 308 -4 1794 281 90 68 chr12 4464918 4465818 -139816671 + L1MEc LINE L1 524 1470 -4926 3170 200 116 96 chr12 4465937 4466205 -139816284 + L1MEc LINE L1 2574 2835 -3380 225 125 0 0 chr12 4466205 4466237 -139816252 - Alu SINE Alu -224 78 47 3170 200 116 96 chr12 4466237 4466322 -139816167 + L1MEc LINE L1 2835 2917 -3298 7971 19 0 0 chr12 4466322 4467361 -139815128 - L1PA3 LINE L1 0 6155 5117 3170 200 116 96 chr12 4467361 4467902 -139814587 + L1MEc LINE L1 2917 3446 -2769 2167 102 0 7 chr12 4467902 4468187 -139814302 - AluSg SINE Alu -27 283 1 3170 200 116 96 chr12 4468187 4468219 -139814270 + L1MEc LINE L1 3446 3476 -2739 2326 45 52 3 chr12 4468219 4468508 -139813981 - AluY SINE Alu -8 303 1 3170 200 116 96 chr12 4468508 4468932 -139813557 + L1MEc LINE L1 3476 3986 -2229 337 314 20 65 chr12 4468975 4469220 -139813269 + L1M4 LINE L1 3702 3935 -2211 492 269 138 39 chr12 4469284 4469566 -139812923 - L2 LINE L2 -4 3309 3000 2061 238 41 23 chr12 4469741 4470393 -139812096 + HAL1 LINE L1 1076 1739 -768 767 307 121 18 chr12 4470409 4470862 -139811627 + MLT1J LTR MaLR 11 510 -1 1891 256 69 46 chr12 4470867 4471606 -139810883 + HAL1 LINE L1 1752 2507 0 1313 274 146 35 chr12 4471694 4472078 -139810411 + L1MC4a LINE L1 3797 4137 -1984 683 297 29 0 chr12 4472078 4472287 -139810202 - MER58C DNA MER1_type 0 215 1 1313 274 146 35 chr12 4472287 4473448 -139809041 + L1MC4a LINE L1 4137 5168 -953 2327 93 3 7 chr12 4473448 4473749 -139808740 + AluSq SINE Alu 1 300 -13 1313 274 146 35 chr12 4473749 4473938 -139808551 + L1MC4a LINE L1 5168 5335 -786 1783 171 3 0 chr12 4473938 4474224 -139808265 - AluJb SINE Alu -21 291 5 1313 274 146 35 chr12 4474224 4474404 -139808085 + L1MC4a LINE L1 5335 5951 -170 229 191 58 159 chr12 4474536 4474642 -139807847 - L1ME4a LINE L1 -35 6086 5971 210 43 22 43 chr12 4474642 4474688 -139807801 + (TTA)n Simple_repeat Simple_repeat 2 46 0 229 191 58 159 chr12 4474688 4474770 -139807719 - L1ME4a LINE L1 -150 5971 5928 1756 135 6 79 chr12 4474770 4475088 -139807401 + AluJb SINE Alu 1 295 -17 229 191 58 159 chr12 4475088 4475155 -139807334 - L1ME4a LINE L1 -193 5928 5856 197 280 130 30 chr12 4475564 4475664 -139806825 - L2 LINE L2 -4 3268 3159 533 348 8 37 chr12 4476820 4477064 -139805425 - MIR SINE MIR -6 256 20 2111 196 19 21 chr12 4477088 4477553 -139804936 - MLT1C LTR MaLR -3 464 1 205 176 0 0 chr12 4477572 4477606 -139804883 + (TGAA)n Simple_repeat Simple_repeat 4 37 0 304 306 96 25 chr12 4477817 4477974 -139804515 - MIR SINE MIR -60 202 35 1744 166 32 3 chr12 4478453 4478736 -139803753 - AluJo SINE Alu -19 293 3 421 293 16 69 chr12 4479098 4479226 -139803263 - MER5B DNA MER1_type 0 178 62 1855 162 0 23 chr12 4479226 4479528 -139802961 - AluJo SINE Alu -13 299 5 421 293 16 69 chr12 4479528 4479587 -139802902 - MER5B DNA MER1_type -116 62 1 1752 142 28 34 chr12 4479893 4480216 -139802273 + L1MC2 LINE L1 6024 6344 0 309 324 54 0 chr12 4480849 4480997 -139801492 - MIR SINE MIR -13 249 94 2314 79 10 0 chr12 4481544 4481836 -139800653 + AluSp SINE Alu 6 300 -13 316 300 49 60 chr12 4482075 4482342 -139800147 - L2 LINE L2 -1 3312 3049 544 307 78 13 chr12 4482489 4482520 -139799969 + MIR SINE MIR 4 32 -230 2409 86 0 3 chr12 4482520 4482822 -139799667 + AluSc SINE Alu 1 301 -8 544 307 78 13 chr12 4482822 4483021 -139799468 + MIR SINE MIR 32 249 -13 1258 132 16 5 chr12 4483879 4484069 -139798420 + AluJb SINE Alu 114 305 -7 375 230 52 37 chr12 4484103 4484238 -139798251 - MLT1J LTR MaLR -374 137 1 483 261 14 35 chr12 4484331 4484473 -139798016 + L2 LINE L2 3134 3272 0 329 288 44 12 chr12 4484969 4485129 -139797360 - MIR3 SINE MIR -8 200 36 254 259 40 52 chr12 4485801 4485902 -139796587 - MIR SINE MIR -101 107 8 275 290 103 13 chr12 4488472 4488627 -139793862 + L3b LINE CR1 1284 1452 -131 364 264 61 74 chr12 4489128 4489276 -139793213 - MIR SINE MIR -49 213 68 574 294 135 37 chr12 4489541 4490021 -139792468 + L2 LINE L2 2782 3312 -1 456 253 95 28 chr12 4491197 4491342 -139791147 - MIR SINE MIR -65 143 36 755 325 15 18 chr12 4491528 4491925 -139790564 - L2 LINE L2 0 3313 2918 309 208 202 22 chr12 4492028 4492206 -139790283 + L1ME2 LINE L1 5944 6153 -11 2122 104 4 0 chr12 4492208 4492509 -139789980 - AluSx SINE Alu 0 302 1 207 362 9 29 chr12 4492704 4492809 -139789680 + MIR SINE MIR 80 182 -80 2256 215 47 103 chr12 4493385 4494264 -139788225 + MER97a DNA MER1_type? 59 887 -7 2437 107 0 0 chr12 4494613 4494923 -139787566 + AluSx SINE Alu 1 310 -2 417 101 0 0 chr12 4494953 4495045 -139787444 + Alu SINE Alu 243 334 0 271 250 16 0 chr12 4496273 4496337 -139786152 - MIR SINE MIR -112 150 86 240 293 0 13 chr12 4496551 4496626 -139785863 - MIR SINE MIR -104 158 85 482 305 122 15 chr12 4496935 4497249 -139785240 - L1MC/D LINE L1 -333 5788 5443 2212 101 0 7 chr12 4497262 4497559 -139784930 + AluSx SINE Alu 6 300 -12 2260 119 0 0 chr12 4497576 4497878 -139784611 + AluSx SINE Alu 1 302 -10 2314 97 3 0 chr12 4498833 4499131 -139783358 - AluSx SINE Alu -13 299 1 879 232 0 0 chr12 4499708 4499872 -139782617 - FRAM SINE Alu -2 164 1 8818 194 48 12 chr12 4500417 4502488 -139780001 + L1M2 LINE L1 157 2319 -4530 330 203 0 0 chr12 4502835 4502894 -139779595 + MER2 DNA MER2_type 287 345 0 404 300 36 7 chr12 4502902 4503042 -139779447 + MIR3 SINE MIR 54 197 -11 6930 52 36 0 chr12 4505851 4506941 -139775548 - L1P2 LINE L1 -642 5512 4381 337 295 93 16 chr12 4507442 4507571 -139774918 - L2 LINE L2 0 3272 3134 375 230 52 37 chr12 4507663 4507798 -139774691 + MLT1J LTR MaLR 1 137 -374 1247 132 16 5 chr12 4507832 4508022 -139774467 - AluJb SINE Alu -7 305 114 183 162 0 0 chr12 4508803 4508840 -139773649 + (TTA)n Simple_repeat Simple_repeat 1 37 0 266 184 0 174 chr12 4511337 4511446 -139771043 - MIR SINE MIR -117 145 56 637 238 97 36 chr12 4511852 4512100 -139770389 + AluJo SINE Alu 3 265 -47 8212 97 32 2 chr12 4512383 4513646 -139768843 - L1P LINE L1 -3385 2761 1460 436 318 71 38 chr12 4513785 4514052 -139768437 - L2 LINE L2 -805 2509 2234 1410 273 66 29 chr12 4514060 4514610 -139767879 + MLT1L LTR MaLR 1 570 -18 264 122 0 0 chr12 4516853 4516894 -139765595 + (CA)n Simple_repeat Simple_repeat 2 42 0 2187 98 3 10 chr12 4517071 4517376 -139765113 - AluSc SINE Alu -6 303 1 574 120 11 0 chr12 4517377 4517469 -139765020 - L1MC3 LINE L1 -99 7686 7594 203 170 21 0 chr12 4518484 4518531 -139763958 + CT-rich Low_complexity Low_complexity 2 49 0 2456 56 13 0 chr12 4520796 4521099 -139761390 + AluY SINE Alu 1 307 -4 305 241 126 0 chr12 4521118 4521205 -139761284 - LTR10A LTR ERV1 -511 98 1 823 202 255 47 chr12 4521234 4521615 -139760874 - MER31B LTR ERV1 0 466 7 243 0 0 0 chr12 4522494 4522521 -139759968 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 207 125 0 0 chr12 4523920 4523960 -139758529 + (A)n Simple_repeat Simple_repeat 1 40 0 27 29 0 0 chr12 4524064 4524098 -139758391 + AT_rich Low_complexity Low_complexity 1 34 0 207 186 0 0 chr12 4524178 4524221 -139758268 + A-rich Low_complexity Low_complexity 2 44 0 242 188 29 58 chr12 4524899 4524968 -139757521 + L2 LINE L2 3229 3295 -18 21 0 0 0 chr12 4525444 4525465 -139757024 + AT_rich Low_complexity Low_complexity 1 21 0 2029 115 7 14 chr12 4526305 4526600 -139755889 - AluSx SINE Alu -19 293 1 2149 94 10 13 chr12 4527365 4527673 -139754816 + AluSp SINE Alu 6 312 -1 1212 189 50 12 chr12 4528496 4528755 -139753734 - MLT1A1 LTR MaLR -93 272 4 255 278 101 35 chr12 4529037 4529235 -139753254 - L1MEc LINE L1 -4815 1495 1285 505 300 101 51 chr12 4529253 4529300 -139753189 - L1MEc LINE L1 -4917 1202 1159 2235 118 3 0 chr12 4529300 4529606 -139752883 - AluSq SINE Alu -6 307 1 505 300 101 51 chr12 4529606 4529647 -139752842 - L1MEc LINE L1 -4960 1159 1121 1544 199 82 15 chr12 4529647 4529989 -139752500 + MLT1A1 LTR MaLR 1 365 0 505 300 101 51 chr12 4529989 4530486 -139752003 - L1MEc LINE L1 -4998 1121 587 513 32 0 0 chr12 4530716 4530779 -139751710 + (CA)n Simple_repeat Simple_repeat 1 63 0 1936 124 29 0 chr12 4531434 4531728 -139750761 - AluSx SINE Alu 0 303 2 39 38 0 0 chr12 4531860 4531913 -139750576 + AT_rich Low_complexity Low_complexity 1 53 0 2073 116 17 10 chr12 4532122 4532424 -139750065 + AluSx SINE Alu 5 308 -4 678 302 49 40 chr12 4532495 4532823 -139749666 + L1MEc LINE L1 398 728 -5993 12468 170 27 20 chr12 4532832 4532999 -139749490 + L1MA2 LINE L1 2915 3079 -3067 1832 123 11 0 chr12 4532999 4533268 -139749221 + AluSq SINE Alu 35 306 -7 12468 170 27 20 chr12 4533268 4535546 -139746943 + L1MA2 LINE L1 3079 5379 -767 737 62 0 0 chr12 4535548 4535644 -139746845 + L1PA5 LINE L1 1 96 -6050 11179 44 5 0 chr12 4535644 4538989 -139743500 + L1PA5 LINE L1 623 6134 -20 11179 38 6 0 chr12 4538989 4541030 -139741459 + L1PA5 LINE L1 4094 6147 -7 11179 44 5 0 chr12 4541030 4541045 -139741444 + L1PA5 LINE L1 6134 6147 -7 6285 112 19 7 chr12 4541044 4541971 -139740518 + L1MA2 LINE L1 5366 6304 0 * 2022 147 0 0 chr12 4542123 4542415 -139740074 + AluJb SINE Alu 1 292 -20 276 260 61 41 chr12 4542488 4542684 -139739805 + L1MEc LINE L1 1578 1777 -4944 261 278 48 8 chr12 4542734 4542854 -139739635 + L1MEc LINE L1 1844 1950 -4590 366 265 97 17 chr12 4543078 4543369 -139739120 + L1MEc LINE L1 805 1050 -5165 835 236 5 26 chr12 4543371 4543566 -139738923 - MER58A DNA MER1_type -2 222 32 2390 81 0 7 chr12 4543688 4543984 -139738505 - AluSc SINE Alu -13 296 3 529 304 117 16 chr12 4544438 4544755 -139737734 - L1ME LINE L1 -330 5791 5443 2375 95 0 3 chr12 4544768 4545074 -139737415 + AluSx SINE Alu 6 310 -2 2091 75 8 4 chr12 4547824 4548089 -139734400 + AluSg SINE Alu 1 266 -44 2207 112 7 3 chr12 4548995 4549300 -139733189 - AluSx SINE Alu -6 306 1 499 269 139 22 chr12 4549484 4549807 -139732682 - L1ME LINE L1 -1170 4976 4616 442 257 192 66 chr12 4549843 4550494 -139731995 - L2 LINE L2 -1 3312 2579 2030 155 6 26 chr12 4550672 4551021 -139731468 - L1MC1 LINE L1 0 6402 6061 2359 80 0 3 chr12 4552091 4552391 -139730098 + AluY SINE Alu 1 299 -12 1184 97 0 0 chr12 4552408 4552553 -139729936 + AluSq/x SINE Alu 1 145 -167 201 74 0 0 chr12 4552557 4552584 -139729905 + (A)n Simple_repeat Simple_repeat 1 27 0 1073 237 75 95 chr12 4552652 4553305 -139729184 - L1MC4 LINE L1 -1 8041 7402 1365 229 90 43 chr12 4553312 4553802 -139728687 - L1MC4 LINE L1 -779 7263 6751 2041 212 67 55 chr12 4553819 4554369 -139728120 - L1MC1 LINE L1 -351 5882 5340 342 67 0 0 chr12 4554369 4554414 -139728075 + (TG)n Simple_repeat Simple_repeat 2 46 0 2041 212 67 55 chr12 4554414 4555020 -139727469 - L1MC1 LINE L1 -893 5340 4713 * 5359 153 43 89 chr12 4555017 4555312 -139727177 - L1MC3 LINE L1 0 7785 7478 545 155 29 0 chr12 4555312 4555415 -139727074 - L1MB4 LINE L1 0 6180 6075 5359 153 43 89 chr12 4555415 4555430 -139727059 - L1MC3 LINE L1 -307 7478 7464 2472 144 20 0 chr12 4555430 4555827 -139726662 - L1MA5 LINE L1 -10 6290 5886 5359 153 43 89 chr12 4555827 4556006 -139726483 - L1MC3 LINE L1 -321 7464 7278 2352 93 10 6 chr12 4556006 4556318 -139726171 - AluSp SINE Alu 0 313 1 5359 153 43 89 chr12 4556318 4557097 -139725392 - L1MC3 LINE L1 -507 7278 6573 877 106 28 28 chr12 4557106 4557247 -139725242 - L1MC3 LINE L1 -1449 6336 6196 * 4262 250 124 40 chr12 4557236 4557532 -139724957 - L1MC1 LINE L1 -1480 4735 4465 315 0 0 0 chr12 4557532 4557567 -139724922 + (TG)n Simple_repeat Simple_repeat 2 36 0 4262 250 124 40 chr12 4557567 4557747 -139724742 - L1MC1 LINE L1 -1750 4465 4302 1505 166 110 9 chr12 4557747 4558073 -139724416 + MER46B DNA MER2_type 1 234 -2 4262 250 124 40 chr12 4558073 4558860 -139723629 - L1MC1 LINE L1 -1913 4302 3583 1829 142 3 10 chr12 4558860 4559148 -139723341 - AluSx SINE Alu -21 291 6 4262 250 124 40 chr12 4559148 4560382 -139722107 - L1MC1 LINE L1 -2632 3583 2073 965 191 0 0 chr12 4560388 4560545 -139721944 - AluSc SINE Alu -19 290 134 1299 284 126 36 chr12 4560557 4561447 -139721042 - L1MC1 LINE L1 -4318 2078 1109 2492 90 0 0 chr12 4562163 4562473 -139720016 + AluSg SINE Alu 1 310 0 23 0 0 0 chr12 4562729 4562752 -139719737 + AT_rich Low_complexity Low_complexity 1 23 0 288 0 0 0 chr12 4564240 4564272 -139718217 + (T)n Simple_repeat Simple_repeat 1 32 0 355 198 105 0 chr12 4565706 4565792 -139716697 - L2 LINE L2 -31 3282 3188 299 333 19 28 chr12 4565957 4566065 -139716424 - MIR3 SINE MIR -25 183 77 3713 19 0 0 chr12 4566190 4566609 -139715880 + L1PA2 LINE L1 5737 6155 0 284 246 0 0 chr12 4566625 4566690 -139715799 + MIR SINE MIR 2 66 -196 224 330 0 30 chr12 4567518 4567618 -139714871 + L2 LINE L2 2999 3095 -177 2424 83 0 3 chr12 4568637 4568938 -139713551 + AluY SINE Alu 1 300 -11 261 221 270 22 chr12 4569313 4569481 -139713008 + MIR SINE MIR 36 233 -29 342 325 8 0 chr12 4569958 4570081 -139712408 + MIR SINE MIR 74 197 -65 2114 118 10 0 chr12 4570799 4571088 -139711401 - AluSx SINE Alu -20 292 1 2704 52 0 0 chr12 4571692 4571999 -139710490 - AluY SINE Alu -4 307 1 239 242 15 15 chr12 4572142 4572208 -139710281 + L2 LINE L2 3247 3312 -1 23 0 0 0 chr12 4572527 4572550 -139709939 + AT_rich Low_complexity Low_complexity 1 23 0 573 76 0 0 chr12 4572992 4573071 -139709418 + (TGGA)n Simple_repeat Simple_repeat 1 79 0 315 49 0 0 chr12 4573464 4573505 -139708984 + (CA)n Simple_repeat Simple_repeat 2 42 0 231 331 63 49 chr12 4574985 4575127 -139707362 - L2 LINE L2 -22 3250 3107 347 259 38 63 chr12 4575206 4575364 -139707125 - MIR SINE MIR -50 212 59 750 247 60 8 chr12 4575409 4575644 -139706845 - MIR SINE MIR -3 259 13 1888 106 31 91 chr12 4576416 4576736 -139705753 + AluSx SINE Alu 1 301 -11 381 302 54 27 chr12 4577256 4577405 -139705084 + MER5B DNA MER1_type 1 153 -25 2019 130 17 0 chr12 4578098 4578391 -139704098 + AluSx SINE Alu 1 298 -14 208 181 69 35 chr12 4579419 4579535 -139702954 + (TATAA)n Simple_repeat Simple_repeat 5 124 0 * 336 224 45 0 chr12 4579493 4579627 -139702862 + (TA)n Simple_repeat Simple_repeat 2 141 0 28 0 0 0 chr12 4579631 4579659 -139702830 + AT_rich Low_complexity Low_complexity 1 28 0 194 276 0 11 chr12 4579917 4580004 -139702485 + (CATATA)n Simple_repeat Simple_repeat 5 90 0 2367 117 6 0 chr12 4580785 4581135 -139701354 + L1PA16 LINE L1 5811 6162 -4 1462 163 48 7 chr12 4581443 4581713 -139700776 + L1MC2 LINE L1 6015 6295 -49 232 170 0 0 chr12 4581713 4581760 -139700729 + T-rich Low_complexity Low_complexity 1 47 0 1222 14 0 0 chr12 4581761 4581900 -139700589 - L1PA2 LINE L1 0 6155 6017 305 154 0 0 chr12 4581900 4581948 -139700541 + L1MC2 LINE L1 6282 6333 -11 443 101 29 0 chr12 4582173 4582242 -139700247 - Alu SINE Alu -243 75 5 24 77 0 0 chr12 4582242 4582294 -139700195 + AT_rich Low_complexity Low_complexity 1 52 0 27 29 0 0 chr12 4582667 4582701 -139699788 + AT_rich Low_complexity Low_complexity 1 34 0 270 137 20 0 chr12 4583848 4583899 -139698590 - HSMAR1 DNA Mariner -2 1285 1234 30 0 0 0 chr12 4583917 4583947 -139698542 + AT_rich Low_complexity Low_complexity 1 30 0 2231 116 0 0 chr12 4583947 4584248 -139698241 + AluSx SINE Alu 5 305 -7 319 217 87 22 chr12 4584291 4584383 -139698106 - MIR SINE MIR -78 130 33 2526 52 0 0 chr12 4585314 4585604 -139696885 - AluY SINE Alu -21 290 1 403 280 87 0 chr12 4585927 4586077 -139696412 - MIR SINE MIR -71 191 29 291 28 0 0 chr12 4586453 4586489 -139696000 + (TG)n Simple_repeat Simple_repeat 2 37 0 501 296 91 9 chr12 4587110 4587330 -139695159 + MIR SINE MIR 6 243 -19 209 139 23 0 chr12 4587359 4587402 -139695087 + (TTG)n Simple_repeat Simple_repeat 2 45 0 211 245 0 0 chr12 4587522 4587571 -139694918 + L2 LINE L2 3265 3313 0 2097 72 0 82 chr12 4587892 4588271 -139694218 - AluSc SINE Alu 0 354 1 259 288 0 68 chr12 4588663 4588781 -139693708 - MIR SINE MIR -75 187 78 324 252 99 18 chr12 4588907 4589018 -139693471 + MIR SINE MIR 49 168 -94 562 286 23 98 chr12 4589168 4589567 -139692922 - L2 LINE L2 0 3272 2904 2436 90 0 0 chr12 4589618 4589919 -139692570 + AluSx SINE Alu 1 301 -11 393 329 139 34 chr12 4589920 4590637 -139691852 - L2 LINE L2 -452 2862 2070 422 310 124 0 chr12 4591338 4591580 -139690909 - L2 LINE L2 -1265 2049 1778 1652 161 46 18 chr12 4591854 4592139 -139690350 - AluJb SINE Alu -19 293 1 1972 151 0 0 chr12 4592279 4592557 -139689932 + AluSx SINE Alu 1 278 -34 24 0 0 0 chr12 4593009 4593033 -139689456 + AT_rich Low_complexity Low_complexity 1 24 0 2317 103 0 0 chr12 4593102 4593403 -139689086 + AluY SINE Alu 1 301 -10 1011 220 19 6 chr12 4593419 4593640 -139688849 - MSTD LTR MaLR -4 392 203 220 135 19 19 chr12 4593653 4593705 -139688784 + GA-rich Low_complexity Low_complexity 4 55 0 461 178 0 0 chr12 4593768 4593841 -139688648 - MSTD LTR MaLR -323 73 1 2042 219 62 85 chr12 4593841 4594751 -139687738 - HAL1b LINE L1 -89 1259 371 185 40 0 0 chr12 4594787 4594812 -139687677 - MIR SINE MIR -25 237 213 648 254 113 29 chr12 4594871 4595146 -139687343 - HAL1b LINE L1 -981 367 70 285 329 4 9 chr12 4595216 4595355 -139687134 + CT-rich Low_complexity Low_complexity 1 138 0 417 73 0 61 chr12 4595563 4595645 -139686844 + (TTCC)n Simple_repeat Simple_repeat 4 80 0 2136 125 3 13 chr12 4595924 4596227 -139686262 + AluSx SINE Alu 1 300 -12 180 0 0 0 chr12 4596228 4596248 -139686241 + (TA)n Simple_repeat Simple_repeat 1 20 0 728 284 192 22 chr12 4596256 4596615 -139685874 + MLT1H1 LTR MaLR 27 446 -109 6941 98 34 4 chr12 4597983 4598944 -139683545 + THE1B-int LTR MaLR 286 1282 -298 1406 94 94 47 chr12 4598945 4599158 -139683331 + AluY SINE Alu 72 294 -17 2469 77 0 3 chr12 4599158 4599469 -139683020 + THE1B-int LTR MaLR 1271 1580 0 2436 106 19 30 chr12 4599469 4599837 -139682652 + THE1B LTR MaLR 1 364 0 255 274 55 0 chr12 4600681 4600754 -139681735 - MIR SINE MIR -113 149 73 2353 97 0 10 chr12 4600914 4601222 -139681267 - AluSq SINE Alu -8 305 1 394 234 109 15 chr12 4601337 4601474 -139681015 - MLT1L LTR MaLR 0 615 466 272 243 118 5 chr12 4601475 4601563 -139680926 - MLT1L LTR MaLR -191 391 235 319 246 71 60 chr12 4601851 4602034 -139680455 - L1ME4a LINE L1 -9 6112 5928 22 0 0 0 chr12 4602093 4602115 -139680374 + AT_rich Low_complexity Low_complexity 1 22 0 1365 218 14 7 chr12 4602231 4602516 -139679973 - L1ME4a LINE L1 -338 5783 5497 296 300 25 21 chr12 4602566 4602686 -139679803 + MIR SINE MIR 2 114 -94 2308 98 0 0 chr12 4602730 4603025 -139679464 - AluSg SINE Alu -15 295 1 708 192 32 0 chr12 4603178 4603334 -139679155 - Charlie1b DNA MER1_type -9 514 354 1116 175 0 73 chr12 4603336 4603610 -139678879 + AluJb SINE Alu 40 293 -19 1504 176 119 0 chr12 4603621 4603933 -139678556 - Charlie1b DNA MER1_type -167 356 8 275 200 0 0 chr12 4603933 4603983 -139678506 + MLT1L LTR MaLR 156 205 -410 23 33 0 0 chr12 4605038 4605068 -139677421 + AT_rich Low_complexity Low_complexity 1 30 0 287 175 17 0 chr12 4605069 4605126 -139677363 - AluJ/FLAM SINE Alu -205 97 55 183 243 0 0 chr12 4605338 4605375 -139677114 - MIR3 SINE MIR -3 205 169 288 219 62 0 chr12 4607013 4607077 -139675412 + MIR SINE MIR 86 153 -55 430 195 37 137 chr12 4607094 4607284 -139675205 + MER5B DNA MER1_type 6 176 -2 194 298 0 0 chr12 4607923 4607970 -139674519 - MIR SINE MIR 0 262 216 210 293 0 0 chr12 4607972 4608054 -139674435 + T-rich Low_complexity Low_complexity 1 82 0 2120 114 20 0 chr12 4608060 4608366 -139674123 - AluSx SINE Alu 0 312 1 239 203 0 31 chr12 4608366 4608423 -139674066 - MIR SINE MIR -60 202 146 1458 185 124 43 chr12 4608423 4608769 -139673720 + MLT1A2 LTR MaLR 1 374 0 1900 133 3 7 chr12 4608770 4609072 -139673417 - AluJo SINE Alu -1 311 11 262 326 33 0 chr12 4609078 4609179 -139673310 - MIR SINE MIR -67 141 38 272 278 188 15 chr12 4609950 4610083 -139672406 - MIR SINE MIR -56 206 51 632 183 67 39 chr12 4610222 4610402 -139672087 - MER53 DNA DNA -4 185 1 882 129 232 178 chr12 4610549 4610859 -139671630 - LTR12 LTR ERV1 -228 486 153 2062 118 13 0 chr12 4610859 4611165 -139671324 - AluY SINE Alu -1 310 1 882 129 232 178 chr12 4611165 4611203 -139671286 - LTR12 LTR ERV1 -561 153 119 250 231 0 0 chr12 4611205 4611257 -139671232 - LTR30 LTR ERV1 -670 52 1 1541 223 3 0 chr12 4611310 4611633 -139670856 + L1MB3 LINE L1 5854 6177 -6 1343 210 93 110 chr12 4612531 4613292 -139669197 - MER20B DNA MER1_type 0 783 36 376 110 14 14 chr12 4613345 4613418 -139669071 + (TTTCC)n Simple_repeat Simple_repeat 2 74 0 2864 142 21 4 chr12 4613572 4614045 -139668444 + L1PB4 LINE L1 5662 6142 -14 1610 160 68 0 chr12 4614090 4614371 -139668118 - AluJb SINE Alu -12 300 1 284 285 0 80 chr12 4614419 4614556 -139667933 - MIR SINE MIR -51 211 86 301 309 22 37 chr12 4614645 4614781 -139667708 + L2 LINE L2 3180 3313 0 899 273 62 4 chr12 4615009 4615236 -139667253 - MIR SINE MIR -2 260 21 25 31 0 0 chr12 4615525 4615557 -139666932 + AT_rich Low_complexity Low_complexity 1 32 0 1509 141 32 25 chr12 4615560 4615844 -139666645 - L1MA5A LINE L1 -9 6288 6003 1960 160 0 0 chr12 4616705 4617011 -139665478 + AluSx SINE Alu 1 306 -6 218 211 21 42 chr12 4617409 4617504 -139664985 + C-rich Low_complexity Low_complexity 6 98 0 589 208 75 0 chr12 4617543 4617663 -139664826 - MER20 DNA MER1_type -90 129 1 1116 234 72 41 chr12 4617847 4618210 -139664279 + MLT1B LTR MaLR 6 379 -11 2093 103 33 0 chr12 4619167 4619469 -139663020 - AluSx SINE Alu 0 312 1 1740 106 41 24 chr12 4619655 4619797 -139662692 - AluSx SINE Alu -14 298 160 2744 123 38 131 chr12 4619797 4620408 -139662081 - MER41C LTR ERV1 0 554 1 1740 106 41 24 chr12 4620408 4620558 -139661931 - AluSx SINE Alu -152 160 1 917 142 0 0 chr12 4620558 4620692 -139661797 - AluJb SINE Alu -177 135 2 308 276 52 9 chr12 4620752 4620868 -139661621 + L1MC1 LINE L1 5883 6003 -330 827 194 0 0 chr12 4620923 4621083 -139661406 + AluJb SINE Alu 132 291 -21 237 157 146 79 chr12 4621123 4621212 -139661277 + L1MB8 LINE L1 6040 6134 -44 291 104 0 0 chr12 4621599 4621647 -139660842 + (TTTA)n Simple_repeat Simple_repeat 1 48 0 2108 82 4 0 chr12 4621647 4621927 -139660562 - AluSp SINE Alu -32 281 1 2136 100 0 19 chr12 4621930 4622239 -139660250 - AluSx SINE Alu -9 303 1 324 294 154 37 chr12 4622753 4622889 -139659600 + MER5A DNA MER1_type 33 184 -5 322 254 18 64 chr12 4622883 4622993 -139659496 + L2 LINE L2 3168 3272 0 * 200 371 22 22 chr12 4623088 4623177 -139659312 + MIR3 SINE MIR 104 192 -16 2298 77 0 19 chr12 4623918 4624230 -139658259 - AluY SINE Alu -5 306 1 2389 67 0 0 chr12 4624617 4624916 -139657573 + AluY SINE Alu 1 299 -12 1560 160 52 10 chr12 4625897 4626185 -139656304 + AluJb SINE Alu 1 300 -12 276 279 109 73 chr12 4628812 4628977 -139653512 - MIR3 SINE MIR -5 203 33 263 326 36 14 chr12 4629065 4629203 -139653286 + MIR3 SINE MIR 13 153 -55 1796 114 5 152 chr12 4629407 4629802 -139652687 + MER1B DNA MER1_type 1 337 0 180 315 19 0 chr12 4630512 4630566 -139651923 + L2 LINE L2 3138 3192 -80 1577 149 32 18 chr12 4630617 4630899 -139651590 + AluJo SINE Alu 10 295 -17 185 182 0 0 chr12 4631187 4631220 -139651269 + L2 LINE L2 3240 3272 0 532 331 6 0 chr12 4631319 4631476 -139651013 + MIR SINE MIR 78 235 -27 529 281 134 77 chr12 4631877 4632347 -139650142 + L1MC4a LINE L1 4794 5290 -856 1121 264 108 48 chr12 4632371 4632760 -139649729 + L1MC4a LINE L1 5337 5770 -2038 2003 101 31 3 chr12 4632760 4633048 -139649441 + AluSc SINE Alu 11 306 -3 1121 264 108 48 chr12 4633048 4633215 -139649274 + L1MC4a LINE L1 5770 5926 -1882 206 245 0 0 chr12 4633929 4633982 -139648507 + T-rich Low_complexity Low_complexity 1 53 0 257 271 40 66 chr12 4635445 4635596 -139646893 - MIR3 SINE MIR -16 192 46 279 328 26 72 chr12 4637139 4637334 -139645155 - MER5A DNA MER1_type -3 186 1 282 282 0 0 chr12 4638212 4638290 -139644199 + MER69 DNA AcHobo 1 78 -99 582 267 23 8 chr12 4640760 4640891 -139641598 - MIR SINE MIR -106 156 24 592 271 94 6 chr12 4642443 4642613 -139639876 + MIR SINE MIR 21 205 -57 251 299 153 69 chr12 4645249 4645582 -139636907 + L2 LINE L2 2799 3156 -116 201 367 51 0 chr12 4645709 4645788 -139636701 + L2 LINE L2 3187 3269 -3 3665 271 44 28 chr12 4645939 4647212 -139635277 + L1MEc LINE L1 16 756 -5640 2033 130 3 3 chr12 4647212 4647520 -139634969 + AluSg SINE Alu 1 308 -2 3665 271 44 28 chr12 4647520 4647962 -139634527 + L1MEc LINE L1 756 1189 -5207 1931 213 29 17 chr12 4647948 4648361 -139634128 + L1MC1 LINE L1 5 422 -6004 * 2117 126 152 0 chr12 4648354 4648775 -139633714 + L1MC1 LINE L1 1035 1519 -4907 2039 155 159 80 chr12 4648782 4648927 -139633562 + MER39 LTR ERV1 20 152 -555 2009 110 0 4 chr12 4648927 4649208 -139633281 + AluSx SINE Alu 1 280 -32 2039 155 159 80 chr12 4649208 4649577 -139632912 + MER39 LTR ERV1 152 575 -132 871 118 69 0 chr12 4649579 4649723 -139632766 - L1MCa LINE L1 -4759 1667 1514 255 232 0 18 chr12 4649723 4649779 -139632710 - MER39 LTR ERV1 0 707 653 747 180 77 16 chr12 4649786 4649980 -139632509 + L1MC1 LINE L1 1977 2182 -4244 2269 97 0 3 chr12 4649980 4650290 -139632199 + AluSx SINE Alu 1 309 -3 792 183 0 15 chr12 4650305 4650442 -139632047 + FLAM_C SINE Alu 6 140 -3 8878 220 39 17 chr12 4650473 4652891 -139629598 + L1MC1 LINE L1 2170 4533 -2080 2263 80 3 10 chr12 4652891 4653179 -139629310 + AluSq SINE Alu 9 294 -19 8878 220 39 17 chr12 4653179 4654532 -139627957 + L1MC1 LINE L1 4533 6056 -557 2237 107 3 0 chr12 4654532 4654831 -139627658 + AluSg SINE Alu 1 300 -10 8878 220 39 17 chr12 4654831 4655385 -139627104 + L1MC1 LINE L1 6056 6596 -17 348 255 49 11 chr12 4655409 4655535 -139626954 + L1ME1 LINE L1 1500 1728 -4916 2256 59 52 0 chr12 4655571 4655861 -139626628 + AluY SINE Alu 1 305 -6 2603 182 31 2 chr12 4655953 4656469 -139626020 - L1MA6 LINE L1 0 6300 5770 2070 254 149 14 chr12 4656472 4656484 -139626005 + L1ME1 LINE L1 1874 1883 -4761 2175 69 4 7 chr12 4656484 4656759 -139625730 + AluSc SINE Alu 33 306 -3 2070 254 149 14 chr12 4656759 4657984 -139624505 + L1ME1 LINE L1 1883 3225 -3419 * 2840 222 95 34 chr12 4657982 4658187 -139624302 + L1ME1 LINE L1 4028 4219 -2425 2388 66 0 26 chr12 4658187 4658491 -139623998 - AluY SINE Alu -15 296 1 2840 222 95 34 chr12 4658491 4659205 -139623284 + L1ME1 LINE L1 4219 5003 -1641 1043 229 16 12 chr12 4659215 4659464 -139623025 + MLT2D LTR ERVL 1 250 -164 5599 143 6 28 chr12 4659507 4659829 -139622660 + L1MA6 LINE L1 5469 5796 -1002 200 35 35 0 chr12 4659829 4659858 -139622631 + (CAA)n Simple_repeat Simple_repeat 1 30 0 5599 143 6 28 chr12 4659858 4660787 -139621702 + L1MA6 LINE L1 5796 6692 -106 3064 237 28 11 chr12 4660792 4661546 -139620943 + L1MB7 LINE L1 5407 6173 -11 785 251 144 0 chr12 4661564 4661835 -139620654 + L1ME1 LINE L1 5114 5423 -1221 1288 205 27 67 chr12 4661843 4662214 -139620275 + MLT1D LTR MaLR 1 356 -149 2800 213 72 57 chr12 4662217 4662338 -139620151 + L1ME1 LINE L1 5557 5675 -989 189 0 0 0 chr12 4662338 4662359 -139620130 + (TTTA)n Simple_repeat Simple_repeat 2 22 0 1813 167 0 0 chr12 4662362 4662644 -139619845 - AluSx SINE Alu -30 282 1 2800 213 72 57 chr12 4662644 4663613 -139618876 + L1ME1 LINE L1 5676 6661 -3 341 329 120 21 chr12 4663834 4664068 -139618421 - L3 LINE CR1 -1 1576 1320 232 301 41 0 chr12 4664398 4664471 -139618018 + L3 LINE CR1 1486 1561 -16 460 252 202 38 chr12 4664569 4664831 -139617658 + MLT1L LTR MaLR 311 615 0 2284 188 62 10 chr12 4664908 4665420 -139617069 + MLT1F LTR MaLR 4 542 0 947 242 0 0 chr12 4665735 4665913 -139616576 + MER58A DNA MER1_type 1 178 -46 194 150 25 0 chr12 4666185 4666225 -139616264 + CT-rich Low_complexity Low_complexity 2 42 0 219 69 0 0 chr12 4666321 4666350 -139616139 + (CA)n Simple_repeat Simple_repeat 2 30 0 229 333 65 28 chr12 4666866 4666974 -139615515 - L2 LINE L2 -88 3184 3073 5309 159 52 61 chr12 4667855 4669212 -139613277 + L1M2 LINE L1 4187 5535 -743 256 77 0 0 chr12 4669247 4669286 -139613203 + L1M2 LINE L1 5785 5823 -477 2455 151 26 28 chr12 4669315 4669811 -139612678 + L1MA8 LINE L1 5786 6280 -11 566 275 185 18 chr12 4669976 4670198 -139612291 - MIR SINE MIR 0 262 4 479 227 17 0 chr12 4670664 4670783 -139611706 + L1MB5 LINE L1 6054 6174 0 240 295 63 53 chr12 4671119 4671214 -139611275 + L2 LINE L2 3160 3255 -17 358 293 169 38 chr12 4671916 4672182 -139610307 - L2 LINE L2 -20 3252 2952 896 253 0 10 chr12 4672256 4672454 -139610035 + MER58A DNA MER1_type 1 196 -28 1970 213 89 38 chr12 4672933 4674223 -139608266 - L1MDb LINE L1 -4227 2179 771 519 303 156 45 chr12 4674483 4674836 -139607653 + L2 LINE L2 2920 3311 -2 235 330 45 0 chr12 4675032 4675120 -139607369 - MIR SINE MIR -111 151 60 372 276 86 32 chr12 4675125 4675467 -139607022 - L1MEc LINE L1 -892 1684 1268 691 269 51 76 chr12 4675475 4675787 -139606702 + L1ME1 LINE L1 4947 5265 -901 2122 125 0 0 chr12 4675787 4676076 -139606413 + AluSg SINE Alu 1 289 -21 691 269 51 76 chr12 4676076 4676195 -139606294 + L1ME1 LINE L1 5265 5386 -780 2355 98 7 0 chr12 4676195 4676502 -139605987 + AluSx SINE Alu 2 310 -2 691 269 51 76 chr12 4676502 4677019 -139605470 + L1ME1 LINE L1 5386 5867 -299 1410 225 137 63 chr12 4677190 4677701 -139604788 + MLT1H LTR MaLR 1 549 0 278 127 13 38 chr12 4678730 4678809 -139603680 + GA-rich Low_complexity Low_complexity 3 79 0 564 260 106 41 chr12 4678810 4679056 -139603433 - MIR SINE MIR 0 262 1 2566 244 16 4 chr12 4679358 4679919 -139602570 + MER82 DNA MER2_type 1 568 -85 384 221 0 0 chr12 4680030 4680107 -139602382 + MER82 DNA MER2_type 577 653 0 1087 168 35 0 chr12 4681812 4682014 -139600475 + MER2 DNA MER2_type 1 209 -136 21 57 0 0 chr12 4684214 4684249 -139598240 + AT_rich Low_complexity Low_complexity 1 35 0 1778 156 72 46 chr12 4686152 4686203 -139596286 - Charlie1b DNA MER1_type -2240 521 473 686 213 8 0 chr12 4686203 4686325 -139596164 + FLAM_A SINE Alu 1 123 -10 1778 156 72 46 chr12 4686325 4686689 -139595800 - Charlie1b DNA MER1_type -2288 473 95 201 369 54 39 chr12 4687528 4687658 -139594831 + L2 LINE L2 3137 3268 -4 2280 91 0 0 chr12 4688080 4688385 -139594104 + AluSx SINE Alu 1 305 0 21 0 0 0 chr12 4688487 4688508 -139593981 + AT_rich Low_complexity Low_complexity 1 21 0 2963 220 39 8 chr12 4688543 4689283 -139593206 - L1M4 LINE L1 -930 5216 4454 23 0 0 0 chr12 4690208 4690231 -139592258 + AT_rich Low_complexity Low_complexity 1 23 0 1884 225 115 42 chr12 4691218 4691791 -139590698 + L1ME3A LINE L1 5556 6170 0 1886 109 7 59 chr12 4692934 4693238 -139589251 - MER1B DNA MER1_type 0 339 52 576 208 9 0 chr12 4693458 4693564 -139588925 - FLAM_A SINE Alu -18 124 18 183 295 0 0 chr12 4694058 4694136 -139588353 + GA-rich Low_complexity Low_complexity 3 80 0 216 0 0 0 chr12 4694915 4694939 -139587550 + (TTAA)n Simple_repeat Simple_repeat 3 26 0 2160 107 0 0 chr12 4694939 4695220 -139587269 - AluSc SINE Alu -28 281 1 1090 291 156 29 chr12 4695224 4695646 -139586843 + L2 LINE L2 2329 2696 -617 3502 116 27 12 chr12 4695646 4696164 -139586325 + MER1A DNA MER1_type 1 526 -1 1090 291 156 29 chr12 4696164 4696626 -139585863 + L2 LINE L2 2696 3313 0 420 288 51 24 chr12 4697529 4697722 -139584767 + MIR SINE MIR 16 218 -44 25 51 0 0 chr12 4697779 4697818 -139584671 + AT_rich Low_complexity Low_complexity 1 39 0 326 287 131 16 chr12 4748696 4748818 -139533671 + MARNA DNA Mariner 57 192 -394 1189 262 42 42 chr12 4749973 4750404 -139532085 + L1MC4a LINE L1 5536 5966 -1842 2118 144 3 0 chr12 4751002 4751308 -139531181 + AluSx SINE Alu 2 308 -4 27071 28 18 1 chr12 4751434 4757446 -139525043 + L1PA2 LINE L1 1 6161 0 1042 31 0 8 chr12 4757504 4757633 -139524856 + L1PA3 LINE L1 6028 6155 0 3169 166 76 29 chr12 4757802 4758496 -139523993 + L1MA9 LINE L1 5576 6302 -10 3562 94 37 2 chr12 4758899 4759418 -139523071 + L1PA11 LINE L1 5638 6174 0 23 86 0 0 chr12 4760102 4760160 -139522329 + AT_rich Low_complexity Low_complexity 1 58 0 207 0 0 0 chr12 4760223 4760246 -139522243 + (TA)n Simple_repeat Simple_repeat 1 23 0 * 264 30 0 0 chr12 4760245 4760278 -139522211 + (GA)n Simple_repeat Simple_repeat 2 34 0 860 136 0 0 chr12 4761114 4761232 -139521257 + FLAM_C SINE Alu 1 118 -25 30 0 0 0 chr12 4761232 4761262 -139521227 + AT_rich Low_complexity Low_complexity 1 30 0 1493 148 129 8 chr12 4762209 4762473 -139520016 + MER1B DNA MER1_type 44 339 0 1623 199 65 3 chr12 4762473 4762825 -139519664 + L1ME1 LINE L1 96 469 -5954 563 241 73 102 chr12 4762831 4763146 -139519343 + L1ME1 LINE L1 851 1156 -5267 1059 65 7 0 chr12 4763179 4763317 -139519172 + L1PB1 LINE L1 6013 6151 0 307 217 152 0 chr12 4763523 4763615 -139518874 + L1ME1 LINE L1 1246 1351 -5072 2109 100 0 31 chr12 4763617 4763906 -139518583 + AluSg SINE Alu 1 280 -30 574 213 85 16 chr12 4763934 4764141 -139518348 + L1ME1 LINE L1 1331 1542 -4890 270 242 0 0 chr12 4764174 4764236 -139518253 + L1ME1 LINE L1 4422 4483 -2458 180 0 0 0 chr12 4764236 4764256 -139518233 + (CAAA)n Simple_repeat Simple_repeat 2 21 0 1223 191 39 13 chr12 4764326 4764457 -139518032 + L1ME1 LINE L1 5786 5912 -1029 1624 176 42 3 chr12 4764457 4764769 -139517720 + L1MC1 LINE L1 6001 6324 -9 1223 191 39 13 chr12 4764769 4764946 -139517543 + L1ME1 LINE L1 5912 6102 -839 2378 193 67 27 chr12 4764952 4765516 -139516973 + L1ME1 LINE L1 6170 6756 -205 483 198 52 13 chr12 4765526 4765658 -139516831 + L1ME1 LINE L1 6836 7129 0 5215 41 2 5 chr12 4765880 4766513 -139515976 + L1PA5 LINE L1 5524 6154 0 355 143 32 16 chr12 4766572 4766635 -139515854 - AluJ/FRAM SINE Alu -8 294 231 307 238 75 0 chr12 4766680 4766760 -139515729 + MER112 DNA MER1_type 1 86 -174 237 269 0 125 chr12 4766965 4767069 -139515420 - L2 LINE L2 0 3272 3182 244 264 107 14 chr12 4767332 4767472 -139515017 + L2 LINE L2 3090 3242 -71 22 0 0 0 chr12 4768210 4768232 -139514257 + AT_rich Low_complexity Low_complexity 1 22 0 931 201 31 35 chr12 4768701 4768930 -139513559 + L1ME3A LINE L1 5938 6165 -5 2345 98 0 0 chr12 4769098 4769393 -139513096 + AluSx SINE Alu 1 295 -17 390 21 0 0 chr12 4771435 4771482 -139511007 + (CA)n Simple_repeat Simple_repeat 2 48 0 634 263 202 3 chr12 4771917 4772144 -139510345 + MIR SINE MIR 1 251 -11 314 315 39 62 chr12 4774180 4774440 -139508049 + L2 LINE L2 490 743 -2571 851 39 0 0 chr12 4774452 4774554 -139507935 + MER83 LTR ERV1 1 102 -346 1146 74 217 0 chr12 4774556 4774745 -139507744 - MER30 DNA MER1_type 0 230 1 * 1698 144 101 15 chr12 4774745 4775069 -139507420 + MER83 LTR ERV1 97 448 0 768 322 162 37 chr12 4775073 4775806 -139506683 + L2 LINE L2 759 1583 -1731 342 342 84 8 chr12 4775816 4776053 -139506436 + L2 LINE L2 1694 1948 -1366 301 221 105 0 chr12 4776078 4776173 -139506316 + HsTC2 DNA Tc2 1794 1898 0 908 139 61 11 chr12 4776276 4776456 -139506033 - MER53 DNA DNA 0 189 1 1881 158 3 7 chr12 4776941 4777239 -139505250 - AluJb SINE Alu -13 299 3 473 296 45 75 chr12 4777652 4777747 -139504742 + MIR3 SINE MIR 6 93 -115 791 232 27 16 chr12 4777747 4777932 -139504557 - MER5A DNA MER1_type -2 187 1 473 296 45 75 chr12 4777932 4778035 -139504454 + MIR3 SINE MIR 93 198 -10 26 50 0 0 chr12 4778323 4778363 -139504126 + AT_rich Low_complexity Low_complexity 1 40 0 342 338 81 68 chr12 4779386 4780024 -139502465 + L2 LINE L2 2622 3264 -8 858 257 50 20 chr12 4780319 4780619 -139501870 + L1ME3 LINE L1 5590 5898 -264 280 277 89 30 chr12 4781865 4781966 -139500523 - MIR SINE MIR -150 112 6 1346 297 95 25 chr12 4782221 4782833 -139499656 - L2 LINE L2 -354 2960 2306 1373 227 42 30 chr12 4782854 4783184 -139499305 + Charlie1a DNA MER1_type 1 334 -1121 1086 202 32 9 chr12 4783302 4783520 -139498969 + Charlie1a DNA MER1_type 326 548 -907 1390 133 69 9 chr12 4783629 4783847 -139498642 + MER46A DNA MER2_type 1 231 -5 41 66 0 0 chr12 4784281 4784357 -139498132 + AT_rich Low_complexity Low_complexity 1 76 0 2160 116 7 3 chr12 4785598 4785899 -139496590 - AluSq SINE Alu -11 302 1 5049 144 45 9 chr12 4787179 4788133 -139494356 + L1MB7 LINE L1 5196 6184 0 244 220 68 17 chr12 4788340 4788399 -139494090 + L2 LINE L2 3202 3263 -9 22 35 0 0 chr12 4788422 4788451 -139494038 + AT_rich Low_complexity Low_complexity 1 29 0 1819 160 14 0 chr12 4789609 4789902 -139492587 - AluJo SINE Alu -15 297 1 646 299 56 21 chr12 4790250 4790484 -139492005 - MIR SINE MIR -14 248 7 21 0 0 0 chr12 4790722 4790743 -139491746 + AT_rich Low_complexity Low_complexity 1 21 0 223 421 19 0 chr12 4791528 4791635 -139490854 - L2 LINE L2 -222 3050 2942 202 295 65 36 chr12 4791696 4791835 -139490654 - L2 LINE L2 -471 2843 2701 24 53 0 0 chr12 4791900 4791938 -139490551 + AT_rich Low_complexity Low_complexity 1 38 0 392 274 78 0 chr12 4792017 4792119 -139490370 - L2 LINE L2 -2 3311 3202 939 165 60 22 chr12 4792184 4792366 -139490123 + MER46A DNA MER2_type 47 235 -1 900 124 7 15 chr12 4792367 4792504 -139489985 + L1M3 LINE L1 5612 5747 -424 2014 161 0 0 chr12 4793167 4793478 -139489011 - AluSx SINE Alu -1 311 1 389 266 28 37 chr12 4793682 4793752 -139488737 + L1MC5 LINE L1 7301 7370 -591 2337 97 3 0 chr12 4793752 4794050 -139488439 + AluSx SINE Alu 1 299 -13 389 266 28 37 chr12 4794050 4794197 -139488292 + L1MC5 LINE L1 7370 7516 -445 551 217 108 43 chr12 4794204 4794481 -139488008 + L1MC5 LINE L1 7621 7915 -46 272 177 146 52 chr12 4794539 4794635 -139487854 + L1ME4a LINE L1 5999 6103 -18 24 53 0 0 chr12 4794693 4794731 -139487758 + AT_rich Low_complexity Low_complexity 1 38 0 696 239 22 22 chr12 4795188 4795372 -139487117 - MIR SINE MIR -2 260 77 466 315 43 16 chr12 4795876 4796060 -139486429 - MIR SINE MIR -51 211 23 1774 173 90 22 chr12 4796623 4797023 -139485466 - MLT1D LTR MaLR -78 427 1 1184 180 0 9 chr12 4797369 4797580 -139484909 - MER3 DNA MER1_type 0 209 1 330 256 259 41 chr12 4797872 4798239 -139484250 + L2 LINE L2 2529 2975 -339 544 264 121 25 chr12 4798514 4798753 -139483736 + MIR SINE MIR 1 262 0 719 232 98 31 chr12 4799111 4799365 -139483124 - L1ME4a LINE L1 -248 5873 5603 182 400 43 14 chr12 4799647 4799787 -139482702 + L2 LINE L2 2833 2976 -338 863 293 30 19 chr12 4800332 4800602 -139481887 - Charlie8 DNA MER1_type -2141 276 4 28 0 0 0 chr12 4800822 4800850 -139481639 + AT_rich Low_complexity Low_complexity 1 28 0 216 338 198 9 chr12 4803225 4803548 -139478941 + L2 LINE L2 2350 2733 -581 184 316 167 47 chr12 4803588 4803863 -139478626 + L2 LINE L2 2804 3111 -161 2430 56 0 0 chr12 4803988 4804275 -139478214 - AluSc SINE Alu 0 309 23 591 157 37 9 chr12 4804306 4804414 -139478075 - AluSq/x SINE Alu -202 111 2 660 326 70 56 chr12 4805965 4806624 -139475865 + L3 LINE CR1 906 1573 -4 575 149 0 9 chr12 4806697 4806811 -139475678 + L1MA4 LINE L1 6039 6151 -149 32 57 0 0 chr12 4806822 4806875 -139475614 + AT_rich Low_complexity Low_complexity 1 53 0 317 311 38 0 chr12 4807174 4807280 -139475209 + L2 LINE L2 3159 3268 -4 423 257 37 93 chr12 4807903 4808117 -139474372 - MIR3 SINE MIR -6 202 1 2281 98 0 10 chr12 4808166 4808463 -139474026 - AluSx SINE Alu -14 298 5 185 399 42 7 chr12 4808582 4808725 -139473764 + L2 LINE L2 2483 2630 -684 2504 88 0 0 chr12 4810917 4811224 -139471265 - AluSp SINE Alu -6 307 1 398 227 55 18 chr12 4812033 4812143 -139470346 - MIR SINE MIR -100 162 49 923 109 0 0 chr12 4812180 4812299 -139470190 - FLAM_C SINE Alu -24 119 1 1792 155 41 10 chr12 4812463 4812579 -139469910 + AluJb SINE Alu 5 116 -196 408 40 0 0 chr12 4812579 4812629 -139469860 + (TAA)n Simple_repeat Simple_repeat 2 51 0 1792 155 41 10 chr12 4812629 4812803 -139469686 + AluJb SINE Alu 116 304 -8 33 66 0 0 chr12 4813201 4813262 -139469227 + AT_rich Low_complexity Low_complexity 1 61 0 212 224 104 0 chr12 4813868 4813935 -139468554 + L2 LINE L2 3005 3078 -235 458 187 207 33 chr12 4813975 4814125 -139468364 + MER33 DNA MER1_type 1 176 -148 194 114 0 23 chr12 4814128 4814172 -139468317 + (TTTTA)n Simple_repeat Simple_repeat 5 47 0 868 136 35 0 chr12 4814212 4814381 -139468108 + MER33 DNA MER1_type 189 363 0 248 368 8 0 chr12 4814383 4814500 -139467989 + L2 LINE L2 3191 3308 -5 306 234 99 63 chr12 4814516 4814627 -139467862 - L2 LINE L2 0 3313 3199 223 222 321 12 chr12 4814734 4814815 -139467674 + MER5B DNA MER1_type 1 106 -72 2417 58 0 45 chr12 4814822 4815133 -139467356 - AluY SINE Alu -14 297 1 276 307 0 40 chr12 4816219 4816320 -139466169 - MIR SINE MIR -110 152 56 21 0 0 0 chr12 4816380 4816401 -139466088 + AT_rich Low_complexity Low_complexity 1 21 0 2441 84 0 0 chr12 4816482 4816791 -139465698 + AluY SINE Alu 1 309 -2 981 280 33 77 chr12 4817167 4817267 -139465222 - L1M4 LINE L1 -376 5802 5699 2031 131 0 7 chr12 4817267 4817558 -139464931 - AluSx SINE Alu -23 289 1 981 280 33 77 chr12 4817558 4817838 -139464651 - L1M4 LINE L1 -479 5699 5408 207 0 0 0 chr12 4817838 4817861 -139464628 + (TG)n Simple_repeat Simple_repeat 2 24 0 2141 108 0 11 chr12 4817861 4818147 -139464342 - AluSc SINE Alu -26 283 1 981 280 33 77 chr12 4818147 4818428 -139464061 - L1M4 LINE L1 -768 5410 5166 * 5527 188 36 16 chr12 4818409 4819779 -139462710 - L1MC2 LINE L1 -20 6307 4883 644 203 31 8 chr12 4819779 4819907 -139462582 - FLAM_A SINE Alu -2 131 1 5527 188 36 16 chr12 4819907 4820533 -139461956 - L1MC2 LINE L1 -1444 4883 4271 517 254 58 111 chr12 4820673 4821240 -139461249 - L1MC2 LINE L1 -4883 1236 700 267 313 9 35 chr12 4821255 4821370 -139461119 - MIR SINE MIR -131 131 20 2393 92 3 0 chr12 4821533 4821871 -139460618 + AluSc SINE Alu 1 309 0 227 259 56 0 chr12 4822105 4822159 -139460330 - L2 LINE L2 -324 2989 2933 336 329 48 6 chr12 4822445 4822612 -139459877 + MIR3 SINE MIR 7 180 -28 235 204 0 20 chr12 4824276 4824325 -139458164 + CT-rich Low_complexity Low_complexity 2 49 0 1563 127 4 0 chr12 4824354 4824583 -139457906 - Tigger4(Zombi) DNA MER2_type 0 2731 2502 2195 65 25 4 chr12 4824700 4824977 -139457512 + AluSp SINE Alu 1 283 -30 327 104 0 0 chr12 4824977 4825025 -139457464 + (AAATG)n Simple_repeat Simple_repeat 3 50 0 665 162 0 0 chr12 4825674 4825779 -139456710 - AluSg/x SINE Alu -30 282 178 1312 100 0 0 chr12 4826063 4826233 -139456256 - AluSq SINE Alu -143 170 1 242 260 65 13 chr12 4826696 4826773 -139455716 - MER5B DNA MER1_type -2 176 96 197 221 39 78 chr12 4826779 4826856 -139455633 + L2 LINE L2 3199 3272 0 2590 63 0 0 chr12 4827091 4827393 -139455096 - AluY SINE Alu -9 302 1 3068 28 3 0 chr12 4827962 4828321 -139454168 + L1PA4 LINE L1 5788 6147 -8 1382 154 118 37 chr12 4828476 4828748 -139453741 + AluJo SINE Alu 5 298 -4 345 24 0 0 chr12 4829244 4829286 -139453203 + (CA)n Simple_repeat Simple_repeat 2 43 0 553 254 129 0 chr12 4829401 4829594 -139452895 - MIR SINE MIR -39 223 6 274 232 0 0 chr12 4830512 4830568 -139451921 + MER113 DNA MER1_type? 4 59 -462 918 199 0 11 chr12 4830591 4830772 -139451717 - FRAM SINE Alu -5 171 1 3631 107 71 0 chr12 4831757 4832309 -139450180 - L1MA2 LINE L1 0 6304 5714 529 274 28 22 chr12 4832495 4832674 -139449815 - MIR SINE MIR -35 227 48 2060 229 122 18 chr12 4833889 4834510 -139447979 - MER76 LTR ERV 0 688 3 514 279 94 35 chr12 4834702 4835021 -139447468 - L3 LINE CR1 -197 1380 1043 227 181 138 60 chr12 4835277 4835393 -139447096 - L3 LINE CR1 -660 917 793 321 236 292 14 chr12 4836450 4836594 -139445895 - MER5A DNA MER1_type -2 187 4 2003 115 40 0 chr12 4836784 4837062 -139445427 - AluSq SINE Alu -24 289 1 310 305 21 0 chr12 4837887 4837982 -139444507 - MIR3 SINE MIR -22 186 90 306 321 139 12 chr12 4838279 4838444 -139444045 - MIR3 SINE MIR -7 201 16 2133 98 0 80 chr12 4840296 4840622 -139441867 + AluSx SINE Alu 1 300 -12 777 179 8 0 chr12 4840633 4840756 -139441733 + FLAM_C SINE Alu 1 124 -9 360 320 122 12 chr12 4840898 4841145 -139441344 + Charlie8 DNA MER1_type 1 274 -2143 198 0 0 0 chr12 4841809 4841831 -139440658 + (T)n Simple_repeat Simple_repeat 1 22 0 196 297 0 14 chr12 4842122 4842196 -139440293 - L2 LINE L2 -222 3050 2978 378 291 20 33 chr12 4842396 4842547 -139439942 + MIR3 SINE MIR 47 195 -13 328 274 142 0 chr12 4842857 4842970 -139439519 - L2 LINE L2 -7 3265 3137 1584 235 145 9 chr12 4843153 4843587 -139438902 - MER21B LTR ERV1 -352 511 19 349 256 13 0 chr12 4843609 4843687 -139438802 - MER21B LTR ERV1 -773 90 12 441 269 214 12 chr12 4843780 4844200 -139438289 + L1ME4a LINE L1 5520 6016 -105 32 0 0 0 chr12 4844308 4844340 -139438149 + AT_rich Low_complexity Low_complexity 1 32 0 315 0 0 0 chr12 4844415 4844450 -139438039 + (TG)n Simple_repeat Simple_repeat 2 36 0 249 268 0 37 chr12 4844832 4844914 -139437575 + T-rich Low_complexity Low_complexity 2 80 0 789 256 35 0 chr12 4846491 4846694 -139435795 + MIR SINE MIR 29 238 -24 189 0 0 0 chr12 4847724 4847745 -139434744 + (TTG)n Simple_repeat Simple_repeat 1 21 0 1584 214 119 69 chr12 4847747 4848832 -139433657 - Charlie2b DNA MER1_type -108 2754 1559 362 19 0 39 chr12 4848832 4848884 -139433605 + (TCTA)n Simple_repeat Simple_repeat 2 51 0 1584 214 119 69 chr12 4848884 4848988 -139433501 - Charlie2b DNA MER1_type -1303 1559 1462 246 261 232 22 chr12 4849014 4849152 -139433337 + MIR3 SINE MIR 6 172 -36 187 345 18 0 chr12 4849687 4849742 -139432747 + MIR SINE MIR 30 85 -123 210 359 26 39 chr12 4851786 4851942 -139430547 - MER5A DNA MER1_type 0 189 36 198 356 20 27 chr12 4851815 4851964 -139430525 + MER5A DNA MER1_type 40 187 -2 * 224 312 52 0 chr12 4853034 4853111 -139429378 - MIR SINE MIR -117 145 65 272 238 152 29 chr12 4853519 4853624 -139428865 + MIR3 SINE MIR 82 199 -9 321 355 0 0 chr12 4854071 4854195 -139428294 + L3 LINE CR1 801 924 -653 580 312 42 39 chr12 4854360 4854693 -139427796 + L3 LINE CR1 1243 1576 -1 813 291 87 4 chr12 4855704 4855934 -139426555 + MIR SINE MIR 2 250 -12 493 299 14 41 chr12 4856605 4856826 -139425663 - MLT1K LTR MaLR -7 581 367 182 352 0 55 chr12 4857573 4857664 -139424825 - MIR SINE MIR -129 133 48 193 285 140 39 chr12 4857679 4857858 -139424631 + L3b LINE CR1 1238 1434 -149 342 287 155 0 chr12 4858775 4858904 -139423585 - MIR3 SINE MIR -2 206 58 3355 220 62 43 chr12 4859155 4860009 -139422480 + L1MDa LINE L1 1298 2196 -4344 2251 114 3 0 chr12 4860009 4860307 -139422182 + AluSx SINE Alu 1 299 -13 3355 220 62 43 chr12 4860307 4860847 -139421642 + L1MDa LINE L1 2196 2724 -3816 2097 200 44 68 chr12 4860850 4861092 -139421397 + L1MB7 LINE L1 4838 5084 -1100 955 205 68 0 chr12 4861092 4861297 -139421192 - MER20 DNA MER1_type 0 219 1 2097 200 44 68 chr12 4861297 4861815 -139420674 + L1MB7 LINE L1 5084 5558 -626 1847 154 13 7 chr12 4861815 4862120 -139420369 + AluJo SINE Alu 1 307 -5 2097 200 44 68 chr12 4862120 4862545 -139419944 + L1MB7 LINE L1 5558 5992 -192 339 247 77 29 chr12 4862555 4862725 -139419764 + L1 LINE L1 4655 4832 -1314 2217 73 52 0 chr12 4862748 4863034 -139419455 + AluSg SINE Alu 1 301 -9 292 246 9 27 chr12 4863036 4863123 -139419366 + L1 LINE L1 4950 5036 -1110 6788 133 56 2 chr12 4863123 4864291 -139418198 + Tigger3b DNA MER2_type 1 1231 0 292 246 9 27 chr12 4864291 4864313 -139418176 + L1 LINE L1 5036 5057 -1089 317 284 82 45 chr12 4864338 4864581 -139417908 + L1MC/D LINE L1 5083 5334 -812 5160 129 46 6 chr12 4864587 4866301 -139416188 + L1PA14 LINE L1 4409 6159 -2 709 291 123 14 chr12 4866301 4866731 -139415758 + L1MC/D LINE L1 5316 5792 -2016 21 0 0 0 chr12 4866756 4866777 -139415712 + AT_rich Low_complexity Low_complexity 1 21 0 25 0 0 0 chr12 4866820 4866845 -139415644 + AT_rich Low_complexity Low_complexity 1 25 0 432 0 0 0 chr12 4866855 4866903 -139415586 + (TG)n Simple_repeat Simple_repeat 2 49 0 587 243 158 7 chr12 4867751 4867903 -139414586 - MER5A DNA MER1_type -12 177 3 267 147 27 13 chr12 4868217 4868292 -139414197 + GA-rich Low_complexity Low_complexity 1 76 0 984 280 4 30 chr12 4871462 4871730 -139410759 - MIR SINE MIR 0 262 2 1044 92 0 7 chr12 4871760 4871912 -139410577 - L1PA13 LINE L1 -280 5883 5733 2105 52 4 0 chr12 4871912 4872182 -139410307 + L1PA13 LINE L1 5887 6158 -5 680 313 39 27 chr12 4872727 4872983 -139409506 - MIR SINE MIR -2 260 2 216 0 0 0 chr12 4873002 4873026 -139409463 + (GAAAA)n Simple_repeat Simple_repeat 3 26 0 1249 182 176 6 chr12 4873159 4873511 -139408978 + LTR37A LTR ERV1 13 424 -2 207 69 0 0 chr12 4874132 4874161 -139408328 + (CA)n Simple_repeat Simple_repeat 1 29 0 430 204 8 15 chr12 4874289 4874421 -139408068 + MER31-int LTR ERV1 1312 1442 -3494 293 266 39 34 chr12 4874563 4874770 -139407719 + MER31-int LTR ERV1 1679 1886 -3050 2474 80 0 0 chr12 4875167 4875478 -139407011 - AluY SINE Alu 0 311 1 726 153 48 16 chr12 4875685 4875809 -139406680 + AluJb SINE Alu 2 129 -183 35 24 0 0 chr12 4875809 4875851 -139406638 + AT_rich Low_complexity Low_complexity 1 42 0 1805 169 21 0 chr12 4879294 4879584 -139402905 - AluJo SINE Alu -16 296 1 499 159 104 99 chr12 4879708 4879890 -139402599 + LTR41 LTR ERVL 1 183 -590 405 196 82 44 chr12 4879987 4880145 -139402344 + LTR41 LTR ERVL 604 767 -6 217 235 20 0 chr12 4880148 4880199 -139402290 + L2 LINE L2 3261 3312 -1 198 138 15 62 chr12 4880357 4880422 -139402067 + (TA)n Simple_repeat Simple_repeat 2 63 0 225 235 0 39 chr12 4880962 4881013 -139401476 + L2 LINE L2 3223 3271 -1 190 324 15 15 chr12 4881435 4881503 -139400986 + L2 LINE L2 2397 2464 -850 3162 57 0 37 chr12 4881961 4882343 -139400146 - L1PA6 LINE L1 0 6154 5788 2561 68 0 0 chr12 4882343 4882654 -139399835 - AluY SINE Alu 0 311 1 3162 57 0 37 chr12 4882654 4882707 -139399782 - L1PA6 LINE L1 -366 5788 5735 494 312 0 48 chr12 4883304 4883490 -139398999 - MER5B DNA MER1_type 0 178 2 667 145 73 0 chr12 4883601 4883725 -139398764 - AluSg/x SINE Alu -2 307 175 1079 99 31 31 chr12 4883847 4884009 -139398480 - AluSq SINE Alu -108 205 44 209 353 82 85 chr12 4885063 4885392 -139397097 + L2 LINE L2 2945 3272 0 301 300 12 0 chr12 4886023 4886103 -139396386 - MIR3 SINE MIR -19 189 109 210 216 0 39 chr12 4886571 4886622 -139395867 + L2 LINE L2 3263 3311 -2 2007 138 3 7 chr12 4887168 4887465 -139395024 + AluSx SINE Alu 1 296 -16 1232 116 131 6 chr12 4887909 4888338 -139394151 - MER1A DNA MER1_type 0 533 1 2085 114 17 3 chr12 4888928 4889217 -139393272 + AluSx SINE Alu 2 294 -18 2338 93 7 3 chr12 4889321 4889621 -139392868 - AluSx SINE Alu -11 301 1 311 197 70 14 chr12 4889621 4889692 -139392797 + MIR3 SINE MIR 127 201 -7 279 295 162 46 chr12 4889754 4889927 -139392562 - MIR SINE MIR -50 212 20 826 171 0 0 chr12 4889930 4890059 -139392430 + FLAM_C SINE Alu 2 130 -3 517 276 167 14 chr12 4890925 4891146 -139391343 - L2 LINE L2 -163 3150 2896 311 309 111 37 chr12 4891311 4891473 -139391016 + MIR3 SINE MIR 21 194 -14 279 274 97 9 chr12 4892108 4892221 -139390268 + MIR SINE MIR 84 206 -56 310 364 29 17 chr12 4892589 4892762 -139389727 + MER5B DNA MER1_type 1 175 -3 185 313 75 0 chr12 4892943 4893010 -139389479 - MIR SINE MIR 0 262 191 205 283 0 0 chr12 4893568 4893621 -139388868 - MIR SINE MIR 0 262 210 29 28 0 0 chr12 4893672 4893708 -139388781 + AT_rich Low_complexity Low_complexity 1 36 0 267 262 12 24 chr12 4893877 4893961 -139388528 - MIR SINE MIR 0 262 180 219 357 83 0 chr12 4893957 4894041 -139388448 + L2 LINE L2 3146 3236 -36 * 280 270 90 0 chr12 4894116 4894205 -139388284 - MIR SINE MIR -6 256 160 1861 293 181 20 chr12 4894207 4895216 -139387273 + L2 LINE L2 923 2094 -1220 248 291 9 64 chr12 4895232 4895342 -139387147 + MIR SINE MIR 158 261 -1 820 307 98 9 chr12 4895730 4896046 -139386443 + L3 LINE CR1 1171 1514 -63 1140 220 5 0 chr12 4897646 4897864 -139384625 - MER58A DNA MER1_type -5 219 1 1455 136 136 7 chr12 4897872 4898158 -139384331 + MER33 DNA MER1_type 1 323 -1 405 238 57 8 chr12 4898356 4898478 -139384011 + MER20B DNA MER1_type 65 192 -591 341 269 213 6 chr12 4899236 4899396 -139383093 - MIR SINE MIR -41 221 29 249 292 0 0 chr12 4899533 4899598 -139382891 + CT-rich Low_complexity Low_complexity 3 67 0 213 264 14 42 chr12 4900532 4900604 -139381885 + L3 LINE CR1 908 977 -600 233 325 12 36 chr12 4900946 4901029 -139381460 + L2 LINE L2 3187 3267 -5 26 50 0 0 chr12 4901250 4901290 -139381199 + AT_rich Low_complexity Low_complexity 1 40 0 864 138 0 36 chr12 4901290 4901428 -139381061 - FLAM_C SINE Alu 0 133 1 326 318 0 12 chr12 4902410 4902495 -139379994 - L2 LINE L2 0 3313 3230 2536 323 78 44 chr12 4902544 4902704 -139379785 - L2 LINE L2 -790 2524 2371 845 230 17 0 chr12 4902704 4902878 -139379611 + MER5B DNA MER1_type 1 177 -1 2536 323 78 44 chr12 4902878 4904614 -139377875 - L2 LINE L2 -943 2371 564 301 189 122 14 chr12 4905376 4905450 -139377039 + MIR SINE MIR 20 101 -107 1404 146 3 24 chr12 4905455 4905740 -139376749 - L1MC2 LINE L1 -282 6062 5785 225 108 0 0 chr12 4905845 4905882 -139376607 - L1MB3 LINE L1 -7 6176 6140 1539 196 33 48 chr12 4905883 4906275 -139376214 + MLT1B LTR MaLR 1 386 -4 708 123 9 0 chr12 4906279 4906393 -139376096 + MLT1B-int LTR MaLR 1 115 -1256 * 2294 193 11 11 chr12 4906384 4906856 -139375633 + MLT1B-int LTR MaLR 260 731 -640 279 261 0 0 chr12 4906968 4907033 -139375456 + MLT1B-int LTR MaLR 678 742 -993 294 312 0 0 chr12 4907246 4907323 -139375166 + MLT1B-int LTR MaLR 1286 1362 -373 1386 181 47 4 chr12 4907383 4907659 -139374830 + MLT1B-int LTR MaLR 1372 1659 -76 * 4164 170 38 31 chr12 4907657 4908347 -139374142 - L1MB2 LINE L1 -39 6132 5449 1541 190 34 17 chr12 4908347 4908642 -139373847 - AluJo SINE Alu -11 301 2 4164 170 38 31 chr12 4908642 4909519 -139372970 - L1MB2 LINE L1 -722 5449 4550 936 174 214 86 chr12 4909519 4909870 -139372619 - MSTD LTR MaLR 0 396 1 4164 170 38 31 chr12 4909870 4910040 -139372449 - L1MB2 LINE L1 -1621 4550 4383 2371 94 0 0 chr12 4910051 4910348 -139372141 - AluSg SINE Alu -13 297 1 189 132 0 0 chr12 4910371 4910409 -139372080 + (A)n Simple_repeat Simple_repeat 1 38 0 617 286 59 79 chr12 4911234 4911616 -139370873 - L2 LINE L2 0 3272 2903 932 176 69 5 chr12 4911622 4911810 -139370679 - MER20 DNA MER1_type 0 219 20 282 183 17 0 chr12 4911817 4911877 -139370612 - MER116 DNA Mariner -19 61 1 269 158 35 0 chr12 4912155 4912212 -139370277 + CT-rich Low_complexity Low_complexity 4 62 0 197 182 247 13 chr12 4912478 4912555 -139369934 + MER5B DNA MER1_type 84 178 0 1516 234 133 6 chr12 4913810 4914470 -139368019 + L1MB8 LINE L1 4259 5023 -1123 29993 99 29 59 chr12 4914488 4920832 -139361657 + L1PA7 LINE L1 12 6154 0 3057 211 75 13 chr12 4920873 4921951 -139360538 + L1MB8 LINE L1 5022 6164 -14 1206 302 130 46 chr12 4922063 4922997 -139359492 - L2 LINE L2 -1295 2019 1008 313 255 143 37 chr12 4923951 4924112 -139358377 + L1ME4a LINE L1 5355 5532 -2276 30 45 0 0 chr12 4924118 4924162 -139358327 + AT_rich Low_complexity Low_complexity 1 44 0 554 274 88 9 chr12 4924174 4924492 -139357997 + L1ME4a LINE L1 5545 5887 -234 327 232 203 22 chr12 4924534 4924672 -139357817 + L1ME4a LINE L1 5956 6118 -3 1574 159 4 30 chr12 4925323 4925594 -139356895 + AluJo SINE Alu 1 264 -48 877 167 0 0 chr12 4925599 4925731 -139356758 + FLAM_A SINE Alu 2 133 0 370 218 0 39 chr12 4925923 4926001 -139356488 - L2 LINE L2 0 3313 3239 402 246 55 0 chr12 4926323 4926433 -139356056 + L2 LINE L2 3193 3308 -5 187 282 218 9 chr12 4926431 4926541 -139355948 - L2 LINE L2 -1344 1970 1838 * 748 192 0 0 chr12 4927028 4927153 -139355336 + FLAM_A SINE Alu 2 126 -7 706 286 87 49 chr12 4927922 4928391 -139354098 + L2 LINE L2 1485 1971 -1343 23 0 0 0 chr12 4930069 4930092 -139352397 + AT_rich Low_complexity Low_complexity 1 23 0 187 343 45 0 chr12 4930447 4930514 -139351975 + MIR SINE MIR 69 138 -70 521 254 60 38 chr12 4930659 4930737 -139351752 + MER5A DNA MER1_type 1 76 -113 1767 164 20 13 chr12 4930737 4931036 -139351453 + AluJo SINE Alu 1 301 -11 521 254 60 38 chr12 4931036 4931142 -139351347 + MER5A DNA MER1_type 76 189 0 489 315 6 6 chr12 4931147 4931309 -139351180 + MER5A DNA MER1_type 25 186 -3 1061 167 68 4 chr12 4931522 4931756 -139350733 - L1MA4 LINE L1 -9 6291 6043 5547 45 6 0 chr12 4931838 4932477 -139350012 - SVA Other Other 0 1386 744 1847 121 0 24 chr12 4932961 4933276 -139349213 + AluSg SINE Alu 1 308 0 818 249 58 29 chr12 4933573 4933814 -139348675 + MIR SINE MIR 14 261 -1 241 313 125 18 chr12 4933901 4934013 -139348476 - MIR SINE MIR -115 147 24 1291 179 67 82 chr12 4934368 4934686 -139347803 - MER67C LTR ERV1 -234 280 67 2405 155 47 0 chr12 4934686 4935092 -139347397 + MSTA LTR MaLR 1 425 -3 1291 179 67 82 chr12 4935092 4935156 -139347333 - MER67C LTR ERV1 -447 67 3 793 107 25 0 chr12 4935349 4935470 -139347019 - MSTB1 LTR MaLR 0 432 309 995 88 0 0 chr12 4935541 4935666 -139346823 + AluJb SINE Alu 1 125 -187 273 234 182 0 chr12 4935689 4935766 -139346723 + L2 LINE L2 3221 3311 -2 928 175 200 66 chr12 4936541 4936906 -139345583 + LTR37A LTR ERV1 12 425 -1 504 260 49 29 chr12 4936937 4937141 -139345348 - Charlie8 DNA MER1_type -2194 223 16 241 273 265 0 chr12 4937204 4937336 -139345153 - MIR SINE MIR -48 214 48 1301 146 106 17 chr12 4937580 4937881 -139344608 - LTR56 LTR ERV1 -117 328 1 2375 86 3 3 chr12 4937993 4938296 -139344193 + AluSp SINE Alu 1 303 -10 207 315 63 45 chr12 4938452 4938563 -139343926 - MIR SINE MIR -142 120 8 2241 146 3 11 chr12 4939263 4939632 -139342857 - MER47A DNA MER2_type 0 366 1 413 270 117 0 chr12 4939812 4939975 -139342514 - L1ME LINE L1 -404 5717 5536 3697 187 71 35 chr12 4940246 4940292 -139342197 - MER21B LTR ERV1 -32 831 788 441 0 0 0 chr12 4940292 4940341 -139342148 + (TG)n Simple_repeat Simple_repeat 2 50 0 3697 187 71 35 chr12 4940341 4940743 -139341746 - MER21B LTR ERV1 -75 788 402 2912 108 35 15 chr12 4940743 4940766 -139341723 + MER4C LTR ERV1 1 22 -443 2443 87 0 3 chr12 4940766 4941077 -139341412 + AluY SINE Alu 1 310 -1 2912 108 35 15 chr12 4941077 4941508 -139340981 + MER4C LTR ERV1 22 464 -1 3697 187 71 35 chr12 4941508 4941768 -139340721 - MER21B LTR ERV1 -461 402 87 1598 161 113 0 chr12 4941768 4942042 -139340447 + AluJb SINE Alu 2 306 -6 3697 187 71 35 chr12 4942042 4942133 -139340356 - MER21B LTR ERV1 -776 87 1 1025 258 16 12 chr12 4942444 4942700 -139339789 + MIR SINE MIR 6 262 0 445 319 126 40 chr12 4942981 4943749 -139338740 - L2 LINE L2 -5 3267 2365 666 0 0 0 chr12 4944667 4944741 -139337748 + (CCA)n Simple_repeat Simple_repeat 2 75 0 246 229 0 0 chr12 4945126 4945187 -139337302 - L1ME LINE L1 -520 5644 5584 * 377 226 105 0 chr12 4945182 4945246 -139337243 - L1ME LINE L1 -3485 2661 2605 2538 192 79 29 chr12 4945246 4945840 -139336649 + MLT1E2 LTR MaLR 1 624 -2 377 226 105 0 chr12 4945840 4945956 -139336533 - L1ME LINE L1 -3541 2605 2462 889 159 0 14 chr12 4945998 4946143 -139336346 - FLAM_C SINE Alu 0 143 1 2209 154 130 0 chr12 4946144 4946559 -139335930 - LTR44 LTR ERV1 -26 493 25 2316 85 7 0 chr12 4946561 4946854 -139335635 + AluSg SINE Alu 1 295 -15 614 202 8 83 chr12 4946896 4947148 -139335341 - L1ME LINE L1 -3680 2466 2234 1004 133 0 0 chr12 4947148 4947298 -139335191 + L1PA15 LINE L1 6013 6162 -3 470 184 0 0 chr12 4947366 4947453 -139335036 - MER58B DNA MER1_type 0 341 255 2470 156 128 32 chr12 4947507 4947576 -139334913 + L1MCa LINE L1 29 90 -6336 2432 75 0 3 chr12 4947576 4947884 -139334605 + AluSg SINE Alu 1 307 -3 2470 156 128 32 chr12 4947884 4948367 -139334122 + L1MCa LINE L1 90 634 -5792 4229 150 27 16 chr12 4948386 4949249 -139333240 + L1MCa LINE L1 834 1794 -4632 6669 219 31 77 chr12 4949260 4951148 -139331341 + L1MCa LINE L1 2684 4657 -1769 1355 35 0 99 chr12 4951148 4951350 -139331139 + L1PA3 LINE L1 5974 6155 0 6669 219 31 77 chr12 4951350 4951905 -139330584 + L1MCa LINE L1 4657 5010 -1416 2212 122 0 19 chr12 4951905 4952217 -139330272 - AluSx SINE Alu -6 306 1 6669 219 31 77 chr12 4952217 4952304 -139330185 + L1MCa LINE L1 5010 5099 -1327 198 103 0 0 chr12 4952649 4952678 -139329811 + (CAA)n Simple_repeat Simple_repeat 2 30 0 394 349 42 12 chr12 4953330 4953496 -139328993 + MIR SINE MIR 86 256 -6 536 190 132 25 chr12 4953615 4953736 -139328753 - FLAM_A SINE Alu -8 134 1 237 267 20 30 chr12 4954435 4954536 -139327953 - L1ME4a LINE L1 -55 6066 5967 559 216 0 16 chr12 4954617 4954742 -139327747 - L1MD3 LINE L1 -1112 6883 6761 381 75 0 0 chr12 4955789 4955842 -139326647 + (TG)n Simple_repeat Simple_repeat 2 54 0 1466 185 24 31 chr12 4955842 4956129 -139326360 - AluJb SINE Alu -27 285 1 407 274 213 5 chr12 4956170 4956367 -139326122 - MIR SINE MIR -5 257 20 242 296 0 20 chr12 4956443 4956541 -139325948 - L1ME4a LINE L1 -335 5786 5691 729 197 0 0 chr12 4956622 4956739 -139325750 + AluJo/FLAM SINE Alu 2 118 -194 2196 124 0 0 chr12 4956739 4957045 -139325444 - AluY SINE Alu -5 306 1 27 0 0 0 chr12 4957050 4957077 -139325412 + AT_rich Low_complexity Low_complexity 1 27 0 207 100 0 0 chr12 4957133 4957163 -139325326 + (CA)n Simple_repeat Simple_repeat 2 31 0 321 317 46 42 chr12 4957307 4957478 -139325011 + MER5A DNA MER1_type 20 178 0 23 0 0 0 chr12 4957679 4957702 -139324787 + AT_rich Low_complexity Low_complexity 1 23 0 364 183 37 90 chr12 4957913 4958051 -139324438 - L1MC4 LINE L1 -1 8037 7685 357 150 1 68 chr12 4958177 4958324 -139324165 - L1MD2 LINE L1 -97 7711 6055 * 6903 174 139 98 chr12 4958322 4959039 -139323450 - L1MDa LINE L1 -4204 2336 1650 2162 112 6 34 chr12 4959039 4959361 -139323128 - AluSq SINE Alu 0 313 1 6903 174 139 98 chr12 4959361 4959836 -139322653 - L1MDa LINE L1 -4890 1650 1196 2004 143 0 7 chr12 4959836 4960130 -139322359 - AluJb SINE Alu -15 297 6 6903 174 139 98 chr12 4960130 4960151 -139322338 - L1MDa LINE L1 -5344 1196 1177 841 121 0 38 chr12 4960151 4960283 -139322206 - FLAM_C SINE Alu -16 127 1 6903 174 139 98 chr12 4960283 4961178 -139321311 - L1MDa LINE L1 -5363 1177 3 2299 95 0 6 chr12 4961180 4961495 -139320994 - AluSq SINE Alu 0 313 1 4750 29 41 39 chr12 4962546 4963132 -139319357 - LTR14C LTR ERVK 0 587 1 7785 75 2 3 chr12 4963769 4964738 -139317751 - LTR5 LTR ERVK 0 969 2 421 198 51 108 chr12 4964834 4964991 -139317498 + MIR SINE MIR 28 175 -87 347 292 7 52 chr12 4965352 4965572 -139316917 + GA-rich Low_complexity Low_complexity 1 209 0 2649 46 3 0 chr12 4966407 4966714 -139315775 + AluY SINE Alu 1 308 -3 340 239 11 45 chr12 4967400 4967488 -139315001 + MER91 DNA MER1_type 57 141 -55 237 350 0 0 chr12 4967548 4967608 -139314881 + MER91 DNA MER1_type 131 190 0 357 293 53 23 chr12 4967946 4968079 -139314410 - MER5A DNA MER1_type 0 189 53 * 403 253 53 11 chr12 4967991 4968086 -139314403 + MER5A DNA MER1_type 56 154 -35 2616 63 0 0 chr12 4968089 4968392 -139314097 - AluSg SINE Alu -7 303 1 276 336 16 33 chr12 4968649 4968771 -139313718 - MER5A DNA MER1_type -68 121 2 271 82 131 49 chr12 4969652 4969713 -139312776 - MIR SINE MIR -66 142 77 195 252 35 78 chr12 4969713 4969767 -139312722 + L2 LINE L2 1396 1505 -1809 4680 191 28 27 chr12 4969874 4971699 -139310790 - L1MB8 LINE L1 0 6178 4351 * 8180 167 51 15 chr12 4971685 4973394 -139309095 - L1MA6 LINE L1 0 6300 4478 2124 54 104 4 chr12 4973394 4973674 -139308815 - AluY SINE Alu -3 308 1 8180 167 51 15 chr12 4973674 4974389 -139308100 - L1MA6 LINE L1 -1822 4478 3790 822 238 29 0 chr12 4974423 4974595 -139307894 - MER45A DNA AcHobo 0 178 2 441 152 0 0 chr12 4974950 4975016 -139307473 - MER3 DNA MER1_type 0 209 144 441 152 0 0 chr12 4975119 4975185 -139307304 - MER3 DNA MER1_type 0 209 144 415 182 0 0 chr12 4975288 4975354 -139307135 - MER3 DNA MER1_type 0 209 144 415 182 0 0 chr12 4975457 4975523 -139306966 - MER3 DNA MER1_type 0 209 144 1017 218 35 0 chr12 4975626 4975828 -139306661 - MER3 DNA MER1_type 0 209 1 461 327 82 14 chr12 4976302 4976522 -139305967 + L2 LINE L2 2181 2415 -899 192 328 16 0 chr12 4976613 4976677 -139305812 - MIR SINE MIR -47 215 151 205 179 0 0 chr12 4976678 4976717 -139305772 + (CTA)n Simple_repeat Simple_repeat 1 39 0 357 259 191 38 chr12 4976859 4976990 -139305499 + MER5A DNA MER1_type 33 183 -6 307 363 8 0 chr12 4977134 4977258 -139305231 + L2 LINE L2 2624 2748 -566 2571 266 35 65 chr12 4977687 4978696 -139303793 + L1M4b LINE L1 12 1214 -5645 254 255 0 0 chr12 4978867 4978914 -139303575 + L1M4 LINE L1 915 961 -5894 * 260 229 0 0 chr12 4978888 4978936 -139303553 + L1M4 LINE L1 1177 1224 -5635 224 119 0 24 chr12 4979108 4979150 -139303339 + (GAAAA)n Simple_repeat Simple_repeat 2 42 0 1495 235 35 47 chr12 4979163 4979627 -139302862 + L1M4 LINE L1 1217 1674 -5185 3159 154 65 28 chr12 4979627 4980148 -139302341 + L1MCa LINE L1 20 565 -5861 1478 209 72 49 chr12 4980148 4980535 -139301954 + MSTD LTR MaLR 1 396 0 3159 154 65 28 chr12 4980535 4980583 -139301906 + L1MCa LINE L1 565 610 -5816 228 214 0 0 chr12 4980588 4980630 -139301859 + L1MCa LINE L1 570 611 -5815 1964 179 71 15 chr12 4980660 4981125 -139301364 + L1M4 LINE L1 4840 5330 -816 339 183 84 0 chr12 4981132 4981203 -139301286 + L1MA10 LINE L1 6180 6256 -78 206 316 0 0 chr12 4981235 4981292 -139301197 + MIR SINE MIR 201 257 -5 24 32 0 0 chr12 4981658 4981689 -139300800 + AT_rich Low_complexity Low_complexity 1 31 0 324 345 70 6 chr12 4981999 4982170 -139300319 - MIR SINE MIR -49 213 32 2286 102 0 10 chr12 4982191 4982505 -139299984 - AluY SINE Alu 0 311 1 381 320 85 25 chr12 4982738 4982938 -139299551 + MIR SINE MIR 14 225 -37 * 785 237 14 50 chr12 4982936 4982963 -139299526 - MIR SINE MIR -44 218 192 2158 134 0 0 chr12 4982963 4983262 -139299227 - AluSq SINE Alu -14 299 1 785 237 14 50 chr12 4983262 4983453 -139299036 - MIR SINE MIR -70 192 8 303 311 67 15 chr12 4983544 4983679 -139298810 + L3b LINE CR1 1319 1460 -123 220 333 31 10 chr12 4983994 4984090 -139298399 + MIR3 SINE MIR 62 159 -49 551 253 40 13 chr12 4984550 4984700 -139297789 + MIR SINE MIR 72 225 -37 209 266 62 0 chr12 4984957 4985021 -139297468 - L2 LINE L2 -1 3312 3245 676 153 53 46 chr12 4985554 4985685 -139296804 - AluJo SINE Alu -176 136 5 695 229 21 21 chr12 4986129 4986317 -139296172 + MIR SINE MIR 10 197 -65 246 114 0 0 chr12 4986774 4986809 -139295680 + MIR SINE MIR 204 238 -24 410 314 43 22 chr12 4987399 4987584 -139294905 + MIR3 SINE MIR 10 198 -10 192 397 0 0 chr12 4988532 4988610 -139293879 - L2 LINE L2 -197 3075 2998 919 148 0 15 chr12 4989315 4989450 -139293039 + FLAM_C SINE Alu 1 133 0 7565 201 36 12 chr12 4989612 4992717 -139289772 - L1MA2 LINE L1 0 7723 4540 5070 86 32 10 chr12 4992717 4993401 -139289088 - L1PA13 LINE L1 0 6163 5465 2599 147 2 0 chr12 4993401 4993823 -139288666 + L1P LINE L1 4726 5148 -998 * 20544 155 49 18 chr12 4993819 4998217 -139284272 - L1MA2 LINE L1 -3012 4553 19 240 295 121 27 chr12 4998346 4998626 -139283863 - MLT1I LTR MaLR -33 376 103 183 320 100 30 chr12 4998830 4998930 -139283559 + MIR SINE MIR 13 119 -143 221 288 34 0 chr12 4998934 4998993 -139283496 + L2 LINE L2 3238 3298 -15 2051 145 32 42 chr12 4999400 4999779 -139282710 + THE1C LTR MaLR 1 375 0 886 258 31 16 chr12 4999925 5000276 -139282213 - MLT1J LTR MaLR -31 480 77 183 286 0 0 chr12 5000927 5000969 -139281520 - L2 LINE L2 -16 3256 3215 314 219 16 0 chr12 5000982 5001046 -139281443 + MIR SINE MIR 43 107 -155 288 0 0 0 chr12 5001145 5001177 -139281312 + (TG)n Simple_repeat Simple_repeat 1 32 0 * 360 0 0 0 chr12 5001176 5001216 -139281273 + (GA)n Simple_repeat Simple_repeat 1 40 0 2295 107 3 0 chr12 5001315 5001614 -139280875 - AluSx SINE Alu -12 300 1 228 291 18 18 chr12 5002030 5002085 -139280404 - MIR SINE MIR -188 74 20 2569 192 92 31 chr12 5002552 5003108 -139279381 - MLT1E LTR MaLR -3 590 1 646 233 70 57 chr12 5003832 5004060 -139278429 - MIR SINE MIR -30 232 2 487 157 209 52 chr12 5004147 5004262 -139278227 - FLAM_C SINE Alu 0 133 1 2990 123 14 2 chr12 5005314 5005743 -139276746 - MER57B LTR ERV1 0 434 1 2339 72 0 28 chr12 5007070 5007390 -139275099 - AluY SINE Alu 0 311 1 239 272 58 29 chr12 5007488 5007591 -139274898 - MIR SINE MIR -64 144 39 216 0 0 0 chr12 5007891 5007915 -139274574 + (T)n Simple_repeat Simple_repeat 1 24 0 326 143 54 0 chr12 5008098 5008195 -139274294 - AluSg SINE Alu 0 322 223 1526 115 34 26 chr12 5008374 5008608 -139273881 - AluSg SINE Alu -73 237 2 554 327 12 0 chr12 5008836 5009001 -139273488 + MIR SINE MIR 95 261 -1 476 282 107 43 chr12 5009047 5009327 -139273162 + L3 LINE CR1 799 1096 -481 619 334 87 48 chr12 5009524 5009940 -139272549 + L2 LINE L2 2840 3271 -1 444 305 17 77 chr12 5010006 5010239 -139272250 + L3 LINE CR1 1267 1485 -92 221 329 13 0 chr12 5010368 5010447 -139272042 + MIR SINE MIR 183 262 0 25 0 0 0 chr12 5010526 5010551 -139271938 + AT_rich Low_complexity Low_complexity 1 25 0 21 36 0 0 chr12 5010903 5010931 -139271558 + AT_rich Low_complexity Low_complexity 1 28 0 387 276 85 92 chr12 5011787 5012221 -139270268 + L1ME4a LINE L1 5501 5931 -190 36 40 0 0 chr12 5012225 5012275 -139270214 + AT_rich Low_complexity Low_complexity 1 50 0 2172 112 0 10 chr12 5012555 5012869 -139269620 + AluSx SINE Alu 1 311 -1 477 333 67 28 chr12 5013075 5013255 -139269234 - MIR SINE MIR -5 257 71 341 321 28 0 chr12 5014354 5014460 -139268029 - MIR SINE MIR -128 134 26 2780 212 107 26 chr12 5016528 5017407 -139265082 + L1MC4a LINE L1 5329 5535 -643 1017 205 107 29 chr12 5017423 5017667 -139264822 + L1MC4 LINE L1 6754 7016 -1026 * 2340 173 60 24 chr12 5017665 5018163 -139264326 + L1MC4 LINE L1 7355 7870 -172 193 206 14 14 chr12 5018172 5018245 -139264244 + (TGGA)n Simple_repeat Simple_repeat 4 76 0 489 193 57 36 chr12 5018256 5018396 -139264093 + L1MC4 LINE L1 7900 8042 0 3442 219 28 28 chr12 5020357 5021179 -139261310 - MER99 DNA DNA -5 823 2 465 283 85 40 chr12 5024716 5024939 -139257550 - L1ME4a LINE L1 0 6121 5889 2270 77 0 7 chr12 5024939 5025236 -139257253 - AluY SINE Alu -16 295 1 1493 146 49 42 chr12 5025236 5025523 -139256966 - AluJo SINE Alu -7 305 17 511 308 73 13 chr12 5025918 5026126 -139256363 - MIR SINE MIR -1 261 43 925 137 0 0 chr12 5026216 5026347 -139256142 + FLAM_C SINE Alu 2 132 -1 1045 191 5 19 chr12 5026423 5026638 -139255851 - MER51C LTR ERV1 0 640 429 21 57 0 0 chr12 5026939 5026974 -139255515 + AT_rich Low_complexity Low_complexity 1 35 0 199 290 140 21 chr12 5027588 5027681 -139254808 + L2 LINE L2 3167 3270 -2 784 215 91 94 chr12 5027714 5028086 -139254403 - MLT1D LTR MaLR -134 371 1 254 296 231 22 chr12 5028146 5028467 -139254022 - L2 LINE L2 -16 3256 2869 188 317 58 8 chr12 5028508 5028628 -139253861 - L2 LINE L2 -467 2847 2722 505 267 27 20 chr12 5029036 5029182 -139253307 + MIR SINE MIR 1 147 -115 1377 266 58 28 chr12 5029182 5029611 -139252878 - MLT1J2 LTR MaLR 0 450 9 186 324 40 14 chr12 5029633 5029707 -139252782 + MIR SINE MIR 166 241 -21 224 30 30 0 chr12 5029710 5029743 -139252746 + (TG)n Simple_repeat Simple_repeat 1 34 0 303 309 55 9 chr12 5031338 5031448 -139251041 + MIR SINE MIR 47 161 -101 340 292 32 42 chr12 5031620 5031781 -139250708 + MIR SINE MIR 31 184 -60 2170 106 0 7 chr12 5032112 5032415 -139250074 - AluSx SINE Alu -11 301 1 1634 139 52 14 chr12 5032477 5032855 -139249634 + AluJb SINE Alu 1 389 0 477 230 86 33 chr12 5032915 5033067 -139249422 - L2 LINE L2 -2 3311 3152 4199 179 61 45 chr12 5033067 5033195 -139249294 + L1MB8 LINE L1 4915 5039 -1139 1899 146 0 16 chr12 5033195 5033530 -139248959 + AluSx SINE Alu 1 312 0 4199 179 61 45 chr12 5033530 5034647 -139247842 + L1MB8 LINE L1 5039 6178 0 918 237 158 73 chr12 5034647 5035148 -139247341 - L2 LINE L2 -151 3162 2598 719 261 65 15 chr12 5035148 5035347 -139247142 + MER63A DNA MER1_type 2 210 0 918 237 158 73 chr12 5035347 5035428 -139247061 - L2 LINE L2 -715 2598 2525 472 328 48 11 chr12 5035495 5035684 -139246805 - MER91A DNA MER1_type 0 196 1 211 313 146 28 chr12 5035684 5035821 -139246668 - MIR SINE MIR -84 178 25 233 264 26 0 chr12 5036121 5036203 -139246286 - MIR SINE MIR -81 127 42 260 302 69 35 chr12 5036373 5036489 -139246000 - L2 LINE L2 -1 3271 3152 315 213 0 0 chr12 5037145 5037220 -139245269 + (TG)n Simple_repeat Simple_repeat 2 76 0 293 239 15 0 chr12 5037351 5037418 -139245071 + MIR SINE MIR 48 115 -147 720 229 86 24 chr12 5037424 5037634 -139244855 - MLT1G LTR MaLR -4 586 364 275 152 0 0 chr12 5037666 5037712 -139244777 - MLT2A2 LTR ERVL -2 451 406 3051 104 17 7 chr12 5037748 5038162 -139244327 - MLT2A2 LTR ERVL -35 418 1 502 307 64 0 chr12 5038195 5038335 -139244154 + L2 LINE L2 3123 3271 -1 302 296 157 15 chr12 5039182 5039345 -139243144 - MIR3 SINE MIR -3 205 22 332 119 17 0 chr12 5041160 5041219 -139241270 + CT-rich Low_complexity Low_complexity 1 60 0 293 322 85 0 chr12 5041423 5041541 -139240948 - L2 LINE L2 -2 3270 3143 279 366 85 18 chr12 5041620 5041784 -139240705 + MIR3 SINE MIR 30 204 -4 290 224 104 0 chr12 5042060 5042127 -139240362 - tRNA-Glu-GAG tRNA tRNA 0 75 2 861 145 34 62 chr12 5042250 5042429 -139240060 - AluJo SINE Alu -24 288 115 395 274 42 2 chr12 5042430 5042601 -139239888 + MIR SINE MIR 45 260 -2 1024 287 87 21 chr12 5043009 5043389 -139239100 - MLT1I LTR MaLR -2 407 3 2055 118 10 0 chr12 5045021 5045317 -139237172 - AluSc SINE Alu -10 299 1 1114 289 27 27 chr12 5045359 5045764 -139236725 - MLT1I LTR MaLR -4 405 1 288 0 0 0 chr12 5046342 5046374 -139236115 + (TG)n Simple_repeat Simple_repeat 2 33 0 216 0 0 0 chr12 5046970 5046994 -139235495 + (CA)n Simple_repeat Simple_repeat 1 24 0 1436 301 101 48 chr12 5047277 5048193 -139234296 + L2 LINE L2 2014 3014 -299 2008 125 0 0 chr12 5048193 5048480 -139234009 - AluSx SINE Alu -25 287 1 1436 301 101 48 chr12 5048480 5048797 -139233692 + L2 LINE L2 3014 3313 0 493 235 61 0 chr12 5049953 5050085 -139232404 + LTR43 LTR ERV1 169 308 -294 274 211 35 0 chr12 5050962 5051019 -139231470 + MIR SINE MIR 204 262 0 24 0 0 0 chr12 5055660 5055684 -139226805 + AT_rich Low_complexity Low_complexity 1 24 0 278 242 68 83 chr12 5055752 5055884 -139226605 + MIR SINE MIR 42 171 -91 258 373 12 6 chr12 5057561 5057722 -139224767 + CT-rich Low_complexity Low_complexity 1 162 0 250 254 120 74 chr12 5058070 5058287 -139224202 + L3b LINE CR1 1115 1341 -242 247 239 0 57 chr12 5058486 5058574 -139223915 + L1MB8 LINE L1 6035 6117 -61 480 18 0 0 chr12 5058788 5058845 -139223644 + (TG)n Simple_repeat Simple_repeat 1 57 0 23 54 0 0 chr12 5059173 5059210 -139223279 + AT_rich Low_complexity Low_complexity 1 37 0 874 223 52 24 chr12 5060853 5061064 -139221425 + MIR SINE MIR 7 223 -39 259 253 40 61 chr12 5061093 5061192 -139221297 - MIR SINE MIR -95 167 71 323 211 42 0 chr12 5061393 5061464 -139221025 - L1MCa LINE L1 -4358 2068 1995 300 304 0 0 chr12 5061464 5061625 -139220864 + (CA)n Simple_repeat Simple_repeat 2 162 0 393 256 185 6 chr12 5062311 5062470 -139220019 + MIR SINE MIR 34 214 -48 493 257 35 0 chr12 5062929 5063042 -139219447 - MIR SINE MIR -62 146 30 414 0 0 0 chr12 5063085 5063131 -139219358 + (CA)n Simple_repeat Simple_repeat 2 47 0 387 0 0 0 chr12 5063957 5064000 -139218489 + (TG)n Simple_repeat Simple_repeat 2 44 0 363 247 67 62 chr12 5064161 5064339 -139218150 + Charlie8 DNA MER1_type 98 276 -2141 2234 105 10 3 chr12 5064378 5064673 -139217816 - AluSq SINE Alu -16 297 1 2173 139 0 0 chr12 5066023 5066333 -139216156 + AluSx SINE Alu 1 310 -2 460 270 82 41 chr12 5066551 5066747 -139215742 + MIR SINE MIR 59 262 0 450 303 56 26 chr12 5067556 5067751 -139214738 - L3b LINE CR1 -118 1465 1265 457 170 28 28 chr12 5067846 5067952 -139214537 - MER103 DNA DNA -47 119 14 217 0 61 0 chr12 5068759 5068792 -139213697 + (TTTTG)n Simple_repeat Simple_repeat 1 35 0 266 277 79 20 chr12 5069036 5069137 -139213352 + MIR SINE MIR 18 124 -84 1006 169 13 9 chr12 5069511 5069830 -139212659 + CT-rich Low_complexity Low_complexity 1 320 0 187 256 0 0 chr12 5070441 5070480 -139212009 + MIR SINE MIR 70 108 -100 409 263 39 28 chr12 5070489 5070668 -139211821 - L1ME4a LINE L1 0 6121 5941 306 248 177 9 chr12 5070925 5071038 -139211451 - L1ME4a LINE L1 -355 5766 5635 598 242 223 14 chr12 5071129 5071340 -139211149 - MIR SINE MIR -1 261 7 331 253 58 11 chr12 5071973 5072060 -139210429 - MER5A DNA MER1_type -43 146 56 279 306 33 87 chr12 5072109 5072292 -139210197 - MER5B DNA MER1_type -1 177 5 328 348 27 71 chr12 5074078 5074262 -139208227 - MIR3 SINE MIR -24 184 9 396 329 86 7 chr12 5074348 5074500 -139207989 + MIR SINE MIR 21 184 -78 247 261 22 11 chr12 5075593 5075675 -139206814 - MLT1L LTR MaLR -46 569 487 866 229 238 52 chr12 5075675 5076138 -139206351 - MLT1H LTR MaLR 0 549 1 341 215 13 13 chr12 5076184 5076263 -139206226 - MLT1L LTR MaLR -215 400 322 270 116 0 0 chr12 5076418 5076461 -139206028 + (TTC)n Simple_repeat Simple_repeat 2 44 0 1918 148 3 23 chr12 5076470 5076773 -139205716 - AluJo SINE Alu -15 297 1 233 270 10 40 chr12 5076774 5076874 -139205615 - MLT1L LTR MaLR -502 113 17 3139 133 25 55 chr12 5077635 5077673 -139204816 + LTR36 LTR ERV1 4 42 -569 2606 53 0 0 chr12 5077673 5077972 -139204517 - AluY SINE Alu -12 299 1 3139 133 25 55 chr12 5077972 5078473 -139204016 + LTR36 LTR ERV1 42 526 -85 2264 96 10 32 chr12 5078473 5078787 -139203702 - AluSq SINE Alu -6 307 1 3139 133 25 55 chr12 5078787 5078846 -139203643 + LTR36 LTR ERV1 526 585 -26 225 378 108 14 chr12 5078934 5079156 -139203333 - L2 LINE L2 -206 3066 2824 534 178 43 98 chr12 5079389 5079428 -139203061 - MER97c DNA MER1_type? -912 178 138 4293 168 102 9 chr12 5079428 5080214 -139202275 + MER21B LTR ERV1 2 860 -3 534 178 43 98 chr12 5080214 5080337 -139202152 - MER97c DNA MER1_type? -952 138 25 1383 203 43 48 chr12 5081161 5081535 -139200954 - MLT1B LTR MaLR -18 372 1 2637 141 16 21 chr12 5081717 5082150 -139200339 + Tigger2a DNA MER2_type 2 432 -2 206 253 76 38 chr12 5082322 5082401 -139200088 - MIR SINE MIR -62 200 119 441 0 0 0 chr12 5082734 5082783 -139199706 + (TCTA)n Simple_repeat Simple_repeat 2 50 0 1161 91 6 0 chr12 5082836 5083012 -139199477 + L1P4 LINE L1 5305 5481 -684 299 267 206 34 chr12 5083703 5083849 -139198640 + Tigger8 DNA MER2_type 70 240 -426 23 33 0 0 chr12 5083852 5083882 -139198607 + AT_rich Low_complexity Low_complexity 1 30 0 863 256 135 21 chr12 5083911 5084290 -139198199 + Tigger8 DNA MER2_type 244 665 -1 343 353 101 58 chr12 5084457 5084551 -139197938 - L2 LINE L2 -9 3263 3174 450 0 0 0 chr12 5084551 5084601 -139197888 + (TG)n Simple_repeat Simple_repeat 2 51 0 343 353 101 58 chr12 5084601 5084903 -139197586 - L2 LINE L2 -98 3174 2850 1963 139 144 11 chr12 5084980 5085348 -139197141 - MSTA LTR MaLR -11 417 1 390 323 85 11 chr12 5085351 5085611 -139196878 - L2 LINE L2 -586 2728 2450 2642 50 0 0 chr12 5085716 5086018 -139196471 - AluY SINE Alu -9 302 1 522 214 14 77 chr12 5086026 5086084 -139196405 - HAL1 LINE L1 -1 2506 2446 2529 144 34 2 chr12 5086084 5086495 -139195994 - MSTA LTR MaLR -4 424 1 522 214 14 77 chr12 5086495 5086656 -139195833 - HAL1 LINE L1 -61 2446 2301 1005 254 55 89 chr12 5086666 5087244 -139195245 - L2 LINE L2 -20 3293 2754 1317 260 105 42 chr12 5087298 5088005 -139194484 - HAL1 LINE L1 -330 2177 1427 473 199 180 19 chr12 5088065 5088226 -139194263 - MER53 DNA DNA -1 188 2 1117 249 64 82 chr12 5088320 5088466 -139194023 - HAL1 LINE L1 -36 2471 2324 1588 137 116 15 chr12 5088466 5088794 -139193695 - MER46B DNA MER2_type 0 236 1 1117 249 64 82 chr12 5088794 5089304 -139193185 - HAL1 LINE L1 -183 2324 1826 2457 75 0 25 chr12 5089304 5089622 -139192867 - AluY SINE Alu -1 310 1 1117 249 64 82 chr12 5089622 5089671 -139192818 - HAL1 LINE L1 -681 1826 1778 2435 262 107 39 chr12 5089770 5091057 -139191432 - HAL1 LINE L1 -1091 1416 42 1678 85 9 0 chr12 5091084 5091296 -139191193 - AluSp SINE Alu -24 289 76 2076 69 11 25 chr12 5091381 5091697 -139190792 + AluSc SINE Alu 10 321 0 249 83 0 0 chr12 5092019 5092055 -139190434 + (T)n Simple_repeat Simple_repeat 1 36 0 247 246 14 29 chr12 5094370 5094439 -139188050 + L2 LINE L2 3205 3272 0 1061 219 113 124 chr12 5094730 5095675 -139186814 - L2 LINE L2 -1 3312 2405 448 361 21 0 chr12 5096787 5096978 -139185511 + MIR3 SINE MIR 5 199 -9 235 346 40 0 chr12 5097188 5097289 -139185200 + MIR SINE MIR 157 261 -1 233 309 25 0 chr12 5098909 5098990 -139183499 + MIR3 SINE MIR 100 182 -26 2215 80 49 0 chr12 5099662 5099948 -139182541 - AluSp SINE Alu -13 300 1 872 211 33 11 chr12 5100000 5100180 -139182309 - MER5A DNA MER1_type -5 184 1 435 38 0 0 chr12 5101754 5101807 -139180682 + (TG)n Simple_repeat Simple_repeat 1 53 0 222 282 42 28 chr12 5103888 5104030 -139178459 + L2 LINE L2 51 194 -3120 455 282 114 44 chr12 5104038 5104311 -139178178 + L2 LINE L2 3021 3312 -1 600 274 37 6 chr12 5104466 5104630 -139177859 - MIR3 SINE MIR -7 201 33 1294 130 0 0 chr12 5104687 5104864 -139177625 + FRAM SINE Alu 1 172 -4 223 189 38 0 chr12 5106227 5106280 -139176209 + (ATG)n Simple_repeat Simple_repeat 3 57 0 983 284 0 0 chr12 5106294 5106519 -139175970 - MIR SINE MIR -10 252 28 765 213 66 35 chr12 5107102 5107299 -139175190 + MER63A DNA MER1_type 1 203 -7 200 219 0 0 chr12 5107732 5107773 -139174716 + (TTCA)n Simple_repeat Simple_repeat 1 41 0 1530 138 0 127 chr12 5108106 5108446 -139174043 - AluJb SINE Alu -15 297 1 479 153 92 0 chr12 5108608 5108706 -139173783 - MIR SINE MIR -96 166 60 3341 157 40 27 chr12 5109442 5110067 -139172422 - L1PA16 LINE L1 -13 6153 5521 964 249 128 41 chr12 5110431 5110845 -139171644 - MLT1J2 LTR MaLR 0 450 1 577 259 15 0 chr12 5111419 5111550 -139170939 - MER94 DNA DNA 0 134 2 23 0 0 0 chr12 5112079 5112102 -139170387 + AT_rich Low_complexity Low_complexity 1 23 0 180 289 0 19 chr12 5112700 5112752 -139169737 - MIR3 SINE MIR -3 205 155 2638 174 131 13 chr12 5112832 5113373 -139169116 - MER6A DNA MER2_type 0 605 1 416 304 81 14 chr12 5114585 5114930 -139167559 + L1M4 LINE L1 2253 2620 -3526 1191 284 130 40 chr12 5115302 5116031 -139166458 + L1M4 LINE L1 3022 3684 -2462 2096 39 75 4 chr12 5116031 5116286 -139166203 - AluY SINE Alu -15 296 24 1191 284 130 40 chr12 5116286 5116600 -139165889 + L1M4 LINE L1 3684 3968 -2178 829 92 8 8 chr12 5116600 5116730 -139165759 + (GAAA)n Simple_repeat Simple_repeat 2 131 0 1191 284 130 40 chr12 5116730 5116916 -139165573 + L1M4 LINE L1 3968 4363 -1783 188 323 99 20 chr12 5118148 5118349 -139164140 - L3b LINE CR1 -25 1558 1342 271 330 32 37 chr12 5118498 5118686 -139163803 + L3 LINE CR1 1056 1242 -335 243 261 118 59 chr12 5119395 5119514 -139162975 + L2 LINE L2 3146 3271 -1 2611 206 17 11 chr12 5119791 5120330 -139162159 + MER74A LTR ERVL 1 542 -16 270 255 78 35 chr12 5120806 5120947 -139161542 - MIR SINE MIR -1 261 115 2104 132 30 30 chr12 5120953 5121316 -139161173 - THE1B LTR MaLR -1 363 1 12103 95 2 2 chr12 5121316 5122897 -139159592 - THE1B-int LTR MaLR 0 1580 1 1016 145 14 104 chr12 5122897 5123118 -139159371 - THE1B LTR MaLR 0 364 164 221 248 34 86 chr12 5123447 5123564 -139158925 + MIR SINE MIR 82 192 -70 453 230 57 109 chr12 5124634 5124836 -139157653 - L1MC5 LINE L1 -45 7916 7736 2563 47 0 28 chr12 5124836 5125156 -139157333 - AluY SINE Alu 0 311 1 453 230 57 109 chr12 5125156 5125284 -139157205 - L1MC5 LINE L1 -225 7736 7603 194 327 0 0 chr12 5125404 5125459 -139157030 - L2 LINE L2 -12 3301 3247 276 374 14 14 chr12 5125467 5125606 -139156883 - MIR SINE MIR -117 145 7 309 222 152 10 chr12 5125720 5125819 -139156670 + MIR SINE MIR 32 144 -118 925 264 35 35 chr12 5126265 5126583 -139155906 - L1MA9 LINE L1 -38 6274 5957 1649 163 3 37 chr12 5126805 5127100 -139155389 - AluJo SINE Alu -19 293 9 210 71 0 0 chr12 5127673 5127701 -139154788 + (CGTG)n Simple_repeat Simple_repeat 1 28 0 180 0 0 0 chr12 5127720 5127740 -139154749 + (TA)n Simple_repeat Simple_repeat 1 20 0 * 243 0 0 0 chr12 5127739 5127766 -139154723 + (GA)n Simple_repeat Simple_repeat 2 28 0 218 286 14 0 chr12 5127836 5127906 -139154583 - L3b LINE CR1 -180 1403 1333 255 219 0 16 chr12 5128121 5128185 -139154304 + CT-rich Low_complexity Low_complexity 2 64 0 687 294 107 44 chr12 5128881 5129433 -139153056 + L1MEd LINE L1 529 1126 -4993 2636 39 7 3 chr12 5129433 5129740 -139152749 + AluY SINE Alu 1 308 -3 687 294 107 44 chr12 5129740 5129806 -139152683 + L1MEd LINE L1 1126 1186 -4933 511 238 142 27 chr12 5129807 5130191 -139152298 + L1MEd LINE L1 1242 1635 -4494 * 1508 269 121 37 chr12 5130190 5130872 -139151617 + L1MB3 LINE L1 3139 3762 -2384 1685 182 30 43 chr12 5130872 5131240 -139151249 + MLT1A1 LTR MaLR 1 363 -2 1508 269 121 37 chr12 5131240 5131809 -139150680 + L1MB3 LINE L1 3762 4496 -1650 4288 204 56 38 chr12 5131944 5132481 -139150008 + L1MB3 LINE L1 4732 5258 -925 512 65 0 130 chr12 5132481 5132573 -139149916 + MADE1 DNA Mariner 1 80 0 4288 204 56 38 chr12 5132573 5133476 -139149013 + L1MB3 LINE L1 5258 6183 0 802 289 76 23 chr12 5133468 5133863 -139148626 + L1ME3A LINE L1 5427 5842 -328 * 1914 123 82 21 chr12 5133920 5134260 -139148229 - MER46B DNA MER2_type 0 236 1 26 30 0 0 chr12 5134490 5134523 -139147966 + AT_rich Low_complexity Low_complexity 1 33 0 2390 89 0 0 chr12 5136966 5137259 -139145230 + AluSc SINE Alu 1 293 -16 201 156 0 0 chr12 5137924 5137956 -139144533 + (TATG)n Simple_repeat Simple_repeat 3 34 0 739 229 58 39 chr12 5138488 5138515 -139143974 + MER3 DNA MER1_type 1 26 -183 2472 68 0 3 chr12 5138515 5138811 -139143678 + AluY SINE Alu 1 295 -16 739 229 58 39 chr12 5138811 5138988 -139143501 + MER3 DNA MER1_type 26 209 0 7300 124 48 10 chr12 5139940 5140189 -139142300 - Tigger3b DNA MER2_type -1816 1212 974 1936 148 3 13 chr12 5140189 5140492 -139141997 + AluJb SINE Alu 6 305 -7 7300 124 48 10 chr12 5140492 5141408 -139141081 - Tigger3b DNA MER2_type -2054 974 3 360 311 97 48 chr12 5141555 5142101 -139140388 + L2 LINE L2 1333 1905 -1409 186 231 0 0 chr12 5142183 5142222 -139140267 + L2 LINE L2 2432 2470 -844 585 310 54 71 chr12 5142320 5142801 -139139688 + MLT1K LTR MaLR 109 581 -7 310 325 68 12 chr12 5142890 5143053 -139139436 - MLT1L LTR MaLR -34 581 410 375 342 59 78 chr12 5143372 5143846 -139138643 + L2 LINE L2 2804 3268 -4 993 193 140 8 chr12 5144074 5144317 -139138172 - L1ME1 LINE L1 -6 6229 5955 * 4282 222 107 28 chr12 5144298 5145548 -139136941 - L1ME1 LINE L1 -781 5434 4055 243 0 0 0 chr12 5145548 5145575 -139136914 + (TG)n Simple_repeat Simple_repeat 2 28 0 4282 222 107 28 chr12 5145575 5145753 -139136736 - L1ME1 LINE L1 -2160 4055 3893 810 301 52 19 chr12 5145775 5146084 -139136405 - L1ME1 LINE L1 -5939 457 139 2292 90 0 7 chr12 5146505 5146844 -139135645 + AluY SINE Alu 1 311 0 2136 279 128 26 chr12 5147314 5147439 -139135050 + L2 LINE L2 1216 1327 -1987 2166 138 3 0 chr12 5147439 5147750 -139134739 - AluSx SINE Alu 0 312 1 2136 279 128 26 chr12 5147750 5148550 -139133939 + L2 LINE L2 1327 2263 -1051 889 173 152 11 chr12 5148550 5148741 -139133748 + MER20 DNA MER1_type 2 219 0 2136 279 128 26 chr12 5148741 5148864 -139133625 + L2 LINE L2 2263 2372 -942 267 287 30 48 chr12 5148865 5149032 -139133457 - LTR16C LTR ERVL 0 491 328 766 322 173 8 chr12 5149535 5150300 -139132189 + L2 LINE L2 2407 3313 0 621 219 0 24 chr12 5150350 5150473 -139132016 + FRAM SINE Alu 1 115 -61 276 170 0 0 chr12 5150480 5150533 -139131956 + GA-rich Low_complexity Low_complexity 2 54 0 39 38 0 0 chr12 5150960 5151013 -139131476 + AT_rich Low_complexity Low_complexity 1 53 0 23 33 0 0 chr12 5156569 5156599 -139125890 + AT_rich Low_complexity Low_complexity 1 30 0 251 53 0 26 chr12 5156830 5156868 -139125621 + (CAAA)n Simple_repeat Simple_repeat 4 40 0 192 97 0 0 chr12 5161207 5161238 -139121251 + (CAGAGA)n Simple_repeat Simple_repeat 2 32 0 537 233 54 4 chr12 5162177 5162344 -139120145 - MER104 DNA Tc2 -3 177 1 218 150 50 0 chr12 5162949 5162989 -139119500 + L2 LINE L2 3221 3262 -10 198 217 104 87 chr12 5163040 5163082 -139119407 + MIR SINE MIR 87 127 -135 2100 131 7 0 chr12 5163082 5163379 -139119110 - AluSx SINE Alu -13 299 1 198 217 104 87 chr12 5163379 5163451 -139119038 + MIR SINE MIR 127 203 -59 29 0 0 0 chr12 5164000 5164029 -139118460 + AT_rich Low_complexity Low_complexity 1 29 0 25 0 0 0 chr12 5164115 5164140 -139118349 + AT_rich Low_complexity Low_complexity 1 25 0 1753 196 0 3 chr12 5166809 5167110 -139115379 + AluJb SINE Alu 2 301 -11 244 53 53 26 chr12 5168135 5168173 -139114316 + L1PA4 LINE L1 5837 5875 -279 1995 38 8 0 chr12 5168262 5168501 -139113988 + L1PA4 LINE L1 5915 6155 0 1206 258 81 15 chr12 5168510 5168906 -139113583 - LTR16A LTR ERVL -6 444 23 1718 182 24 0 chr12 5170681 5170978 -139111511 + AluJb SINE Alu 5 308 -4 219 234 0 0 chr12 5172013 5172060 -139110429 - L3 LINE CR1 -1 1576 1530 271 363 20 36 chr12 5174164 5174415 -139108074 - L3 LINE CR1 -834 743 497 849 47 0 0 chr12 5175082 5175188 -139107301 + (TTC)n Simple_repeat Simple_repeat 3 108 0 943 254 65 7 chr12 5175192 5175468 -139107021 - MLT1C LTR MaLR -52 415 124 288 137 0 0 chr12 5175864 5175915 -139106574 + (TGAA)n Simple_repeat Simple_repeat 4 54 0 397 254 25 16 chr12 5176543 5176665 -139105824 + MIR3 SINE MIR 7 129 -79 23 78 0 0 chr12 5177501 5177552 -139104937 + AT_rich Low_complexity Low_complexity 1 51 0 2258 76 7 40 chr12 5178130 5178431 -139104058 - AluSg1 SINE Alu -18 291 1 1255 211 102 5 chr12 5179055 5179434 -139103055 - MER63 DNA MER1_type 0 1060 8 421 290 73 38 chr12 5179871 5180299 -139102190 - L2 LINE L2 -193 3079 2627 2204 109 10 19 chr12 5180361 5180674 -139101815 + AluSg SINE Alu 1 310 0 260 266 137 65 chr12 5181544 5181822 -139100667 + L2 LINE L2 2866 3163 -109 954 276 165 13 chr12 5182408 5182902 -139099587 - L2 LINE L2 -49 3264 2696 613 330 95 46 chr12 5183041 5184079 -139098410 - L2 LINE L2 -1 3271 2170 364 223 161 18 chr12 5184587 5184699 -139097790 - MIR3 SINE MIR -66 142 15 1935 109 12 0 chr12 5185304 5185561 -139096928 + AluSq SINE Alu 1 260 -53 232 320 115 0 chr12 5186352 5186474 -139096015 + MIR SINE MIR 119 254 -8 321 356 65 40 chr12 5187225 5187500 -139094989 + L2 LINE L2 2989 3270 -2 2387 176 170 29 chr12 5187620 5188239 -139094250 - L1MB7 LINE L1 -25 6159 5454 192 40 0 0 chr12 5188285 5188310 -139094179 + (TTTG)n Simple_repeat Simple_repeat 2 26 0 22 0 0 0 chr12 5188350 5188372 -139094117 + AT_rich Low_complexity Low_complexity 1 22 0 2201 95 7 0 chr12 5188372 5188655 -139093834 - AluSg SINE Alu -24 286 2 2583 150 31 0 chr12 5188732 5189145 -139093344 - MSTB LTR MaLR 0 426 1 183 143 29 0 chr12 5190436 5190471 -139092018 + MIR3 SINE MIR 124 159 -49 2159 110 3 0 chr12 5190548 5190870 -139091619 + AluSx SINE Alu 1 323 0 362 100 17 0 chr12 5190985 5191045 -139091444 + (TCCCC)n Simple_repeat Simple_repeat 3 63 0 21 36 0 0 chr12 5191317 5191345 -139091144 + AT_rich Low_complexity Low_complexity 1 28 0 41 58 0 0 chr12 5193127 5193196 -139089293 + AT_rich Low_complexity Low_complexity 1 69 0 1041 189 34 5 chr12 5194516 5194722 -139087767 + MER20 DNA MER1_type 8 219 0 372 365 41 15 chr12 5194839 5195179 -139087310 + L3b LINE CR1 1143 1491 -92 340 261 48 11 chr12 5196193 5196358 -139086131 + MIR SINE MIR 12 258 -4 375 23 0 0 chr12 5197112 5197156 -139085333 + (TG)n Simple_repeat Simple_repeat 1 44 0 780 226 32 36 chr12 5199117 5199338 -139083151 - MIR SINE MIR -14 248 29 228 254 0 0 chr12 5200196 5200255 -139082234 + T-rich Low_complexity Low_complexity 1 59 0 209 275 38 25 chr12 5200343 5200423 -139082066 + CT-rich Low_complexity Low_complexity 4 84 0 1749 192 58 6 chr12 5201983 5202327 -139080162 - MLT1A1 LTR MaLR -3 362 1 540 291 23 0 chr12 5202639 5202811 -139079678 - MIR3 SINE MIR -3 205 30 440 218 0 0 chr12 5203436 5203523 -139078966 - LTR33 LTR ERVL -1 520 434 414 261 106 55 chr12 5204174 5204373 -139078116 - MLT1K LTR MaLR -17 571 363 184 318 80 0 chr12 5204772 5204860 -139077629 - L2 LINE L2 -518 2796 2702 736 274 45 0 chr12 5205522 5205723 -139076766 + MIR SINE MIR 16 225 -37 742 303 125 24 chr12 5206630 5207314 -139075175 + L2 LINE L2 2549 3309 -4 371 303 29 67 chr12 5207483 5207647 -139074842 - MIR SINE MIR -65 143 6 527 274 128 0 chr12 5207657 5207821 -139074668 - MIR SINE MIR -70 192 8 407 319 135 5 chr12 5208567 5208752 -139073737 + MIR SINE MIR 42 250 -12 209 146 21 0 chr12 5208758 5208806 -139073683 + (TAA)n Simple_repeat Simple_repeat 3 51 0 189 0 0 0 chr12 5209130 5209151 -139073338 + (CAAAAA)n Simple_repeat Simple_repeat 2 22 0 299 383 25 41 chr12 5209340 5209536 -139072953 - MIR SINE MIR -50 212 20 419 335 13 13 chr12 5210164 5210316 -139072173 - MER5A DNA MER1_type -3 186 35 265 313 45 37 chr12 5210200 5210334 -139072155 + MER5A DNA MER1_type 50 184 -5 * 399 253 131 19 chr12 5210985 5211145 -139071344 - MIR SINE MIR -58 204 30 348 331 21 35 chr12 5211966 5212111 -139070378 - MIR SINE MIR -71 191 49 369 75 0 0 chr12 5212146 5212199 -139070290 + (TTCA)n Simple_repeat Simple_repeat 1 53 0 240 304 13 38 chr12 5212857 5212936 -139069553 + L2 LINE L2 3191 3267 -5 565 101 13 0 chr12 5213986 5214065 -139068424 + MADE1 DNA Mariner 1 80 0 2480 160 24 12 chr12 5214332 5214756 -139067733 - MSTB1 LTR MaLR 0 432 4 252 149 0 0 chr12 5214852 5214899 -139067590 + (TCCA)n Simple_repeat Simple_repeat 2 48 0 301 274 32 73 chr12 5214899 5215023 -139067466 - L2 LINE L2 0 3313 3195 1380 196 36 0 chr12 5217266 5217567 -139064922 + MER33 DNA MER1_type 5 316 -8 1239 197 16 100 chr12 5218566 5218886 -139063603 - AluJb SINE Alu -8 294 2 250 289 22 11 chr12 5219376 5219466 -139063023 - MIR SINE MIR -107 155 65 484 355 69 43 chr12 5220292 5220544 -139061945 + L2 LINE L2 2959 3224 -89 2463 56 0 0 chr12 5220544 5220850 -139061639 - AluY SINE Alu -5 306 1 484 355 69 43 chr12 5220850 5220943 -139061546 + L2 LINE L2 3224 3313 0 254 209 105 35 chr12 5220938 5221024 -139061465 - L2 LINE L2 -212 3060 2969 * 327 304 99 44 chr12 5222018 5222199 -139060290 - MIR SINE MIR -71 191 1 356 250 0 0 chr12 5222432 5222512 -139059977 - MER116 DNA Mariner 0 80 1 866 289 29 8 chr12 5222865 5223111 -139059378 + MIR SINE MIR 12 262 0 1373 248 47 77 chr12 5223578 5223770 -139058719 - MER77 LTR ERV1 -4 601 405 1798 153 0 7 chr12 5223770 5224064 -139058425 + AluSx SINE Alu 1 292 -20 1373 248 47 77 chr12 5224064 5224395 -139058094 - MER77 LTR ERV1 -200 405 121 226 296 45 11 chr12 5224457 5224545 -139057944 - L2 LINE L2 -43 3229 3139 506 336 68 65 chr12 5225796 5226172 -139056317 - L2 LINE L2 -5 3267 2891 261 333 53 26 chr12 5226172 5226286 -139056203 + MER91C DNA MER1_type 1 117 -23 332 341 24 8 chr12 5226647 5226773 -139055716 - MIR3 SINE MIR -51 157 30 509 253 91 19 chr12 5226855 5227192 -139055297 - MLT1J2 LTR MaLR -8 442 13 221 269 71 14 chr12 5227332 5227438 -139055051 - MIR SINE MIR -66 142 32 520 272 10 57 chr12 5228679 5228882 -139053607 - MIR SINE MIR -8 254 62 1870 141 7 3 chr12 5228882 5229180 -139053309 - AluSg SINE Alu -11 299 1 181 333 0 71 chr12 5229303 5229402 -139053087 - L2 LINE L2 -185 3087 2996 349 233 233 7 chr12 5230441 5230591 -139051898 - MER5A DNA MER1_type 0 189 6 1234 131 60 0 chr12 5231615 5231814 -139050675 + MER20 DNA MER1_type 4 214 -5 260 241 224 35 chr12 5232143 5232259 -139050230 + MIR3 SINE MIR 6 143 -65 264 294 0 0 chr12 5234191 5234361 -139048128 + (CA)n Simple_repeat Simple_repeat 1 170 0 340 333 19 62 chr12 5234798 5234960 -139047529 + MIR SINE MIR 25 179 -83 1368 153 0 5 chr12 5235666 5235888 -139046601 + AluSg/x SINE Alu 84 304 -8 266 231 15 46 chr12 5236451 5236516 -139045973 - L2 LINE L2 -10 3303 3241 2018 119 0 10 chr12 5236795 5237107 -139045382 - AluSc SINE Alu 0 309 1 448 280 161 16 chr12 5237684 5237870 -139044619 + MIR SINE MIR 22 234 -28 307 272 52 29 chr12 5237960 5238096 -139044393 - MIR SINE MIR -14 248 110 187 329 63 0 chr12 5238199 5238278 -139044211 - L2 LINE L2 -78 3194 3111 221 0 35 0 chr12 5238667 5238696 -139043793 + (GA)n Simple_repeat Simple_repeat 1 30 0 197 303 66 0 chr12 5239019 5239095 -139043394 - L2 LINE L2 -78 3194 3114 260 334 138 2 chr12 5239451 5239623 -139042866 + MIR SINE MIR 15 194 -68 215 31 31 0 chr12 5239755 5239787 -139042702 + (TTTG)n Simple_repeat Simple_repeat 2 34 0 264 331 75 6 chr12 5239940 5240100 -139042389 - MER5A DNA MER1_type -18 171 1 1751 105 44 24 chr12 5241281 5241576 -139040913 - L1MA3 LINE L1 0 6305 6005 476 283 36 18 chr12 5241580 5241746 -139040743 + MIR3 SINE MIR 30 198 -10 248 265 44 0 chr12 5243575 5243643 -139038846 - L2 LINE L2 -1 3312 3242 195 299 58 23 chr12 5244874 5244961 -139037528 + MIR SINE MIR 103 192 -70 330 337 66 31 chr12 5245097 5245293 -139037196 + MIR SINE MIR 24 226 -36 399 211 33 11 chr12 5245957 5246047 -139036442 - L2 LINE L2 0 3313 3222 1352 223 15 29 chr12 5246061 5246195 -139036294 + L1MA9 LINE L1 3 137 -6893 5019 28 2 5 chr12 5246195 5246777 -139035712 + L1PA3 LINE L1 5573 6152 -3 1352 223 15 29 chr12 5246777 5246981 -139035508 + L1MA9 LINE L1 137 1369 -5661 980 266 99 20 chr12 5246990 5247392 -139035097 - MER57B LTR ERV1 0 434 1 1883 229 37 18 chr12 5247420 5247932 -139034557 + L1MA9 LINE L1 3162 3683 -3423 * 5171 149 26 92 chr12 5247924 5248378 -139034111 + L1MA9 LINE L1 5660 6142 -1130 2066 117 7 0 chr12 5248378 5248678 -139033811 + AluSq SINE Alu 1 302 -11 5171 149 26 92 chr12 5248678 5248803 -139033686 + L1MA9 LINE L1 6142 6274 -998 1735 172 13 0 chr12 5248803 5249111 -139033378 + AluJb SINE Alu 1 312 0 5171 149 26 92 chr12 5249111 5249410 -139033079 + L1MA9 LINE L1 6274 6591 -681 1664 88 0 0 chr12 5249410 5249626 -139032863 + AluSg/x SINE Alu 89 304 -8 5171 149 26 92 chr12 5249626 5250474 -139032015 + L1MA9 LINE L1 6591 7272 0 269 277 23 35 chr12 5250662 5250779 -139031710 + MIR SINE MIR 16 129 -103 430 256 216 16 chr12 5251010 5251315 -139031174 - MLT1G1 LTR MaLR 0 595 230 324 120 0 0 chr12 5252081 5252131 -139030358 + (TATG)n Simple_repeat Simple_repeat 2 51 0 243 281 22 45 chr12 5253624 5253713 -139028776 - MIR SINE MIR -62 146 60 1247 203 109 14 chr12 5254054 5254330 -139028159 + AluJb SINE Alu 1 302 0 1917 188 30 10 chr12 5255167 5255566 -139026923 - L1MB7 LINE L1 -28 6156 5750 452 18 18 0 chr12 5255815 5255872 -139026617 + (TC)n Simple_repeat Simple_repeat 1 58 0 237 108 0 0 chr12 5256858 5256895 -139025594 + (CA)n Simple_repeat Simple_repeat 2 38 0 22 0 0 0 chr12 5257320 5257342 -139025147 + AT_rich Low_complexity Low_complexity 1 22 0 277 232 0 0 chr12 5257864 5257920 -139024569 + GA-rich Low_complexity Low_complexity 117 172 0 1066 241 38 4 chr12 5258101 5258338 -139024151 + MIR SINE MIR 18 262 0 180 224 60 30 chr12 5260455 5260522 -139021967 - L2 LINE L2 -25 3247 3179 396 343 70 6 chr12 5261933 5262105 -139020384 - L2 LINE L2 -3 3269 3087 241 299 82 3 chr12 5262223 5262371 -139020118 - MIR SINE MIR -24 238 37 337 259 69 73 chr12 5262653 5262942 -139019547 + L2 LINE L2 2812 3099 -173 368 273 29 36 chr12 5262965 5263104 -139019385 - MER63A DNA MER1_type -4 206 69 209 356 67 22 chr12 5263178 5263313 -139019176 + L2 LINE L2 3111 3251 -21 256 308 15 90 chr12 5263462 5263595 -139018894 + L2 LINE L2 3191 3313 0 207 383 47 0 chr12 5263884 5263991 -139018498 + L2 LINE L2 3137 3248 -24 675 282 12 82 chr12 5264424 5264669 -139017820 + MIR SINE MIR 32 259 -3 199 250 0 0 chr12 5264680 5264716 -139017773 + L3b LINE CR1 1291 1326 -257 480 191 75 0 chr12 5264813 5264907 -139017582 + MER5A DNA MER1_type 9 109 -80 665 228 58 78 chr12 5265827 5266033 -139016456 + MIR SINE MIR 20 221 -41 408 313 113 0 chr12 5267221 5267371 -139015118 + MIR3 SINE MIR 40 206 -2 323 301 53 30 chr12 5270666 5270799 -139011690 + L1ME4a LINE L1 5975 6110 -11 268 296 0 0 chr12 5270912 5270983 -139011506 - L2 LINE L2 -2 3270 3200 261 57 0 0 chr12 5271121 5271156 -139011333 + (A)n Simple_repeat Simple_repeat 1 35 0 7479 37 4 3 chr12 5271223 5272166 -139010323 + L1PA5 LINE L1 5210 6154 0 2263 143 73 26 chr12 5272262 5272567 -139009922 - MER31A LTR ERV1 0 485 149 1185 210 93 101 chr12 5272567 5273180 -139009309 + LTR36 LTR ERV1 4 611 0 2263 143 73 26 chr12 5273180 5273337 -139009152 - MER31A LTR ERV1 -336 149 1 265 324 88 10 chr12 5273466 5273568 -139008921 - MIR SINE MIR -76 132 23 390 295 8 8 chr12 5273954 5274083 -139008406 + MLT2F LTR ERVL 511 639 -24 2091 202 78 11 chr12 5274471 5274931 -139007558 + MLT2F LTR ERVL 1 491 -172 180 200 0 0 chr12 5275539 5275584 -139006905 + (CCCCAG)n Simple_repeat Simple_repeat 3 47 0 813 238 11 0 chr12 5275612 5275797 -139006692 + MLT2F LTR ERVL 477 663 0 311 167 0 17 chr12 5275863 5275923 -139006566 + FAM SINE Alu 115 173 -2 2082 118 27 0 chr12 5275927 5276223 -139006266 + AluY SINE Alu 3 306 -5 410 327 44 23 chr12 5276375 5276579 -139005910 - MIR SINE MIR -45 217 4 792 219 31 85 chr12 5276710 5276934 -139005555 - MIR SINE MIR -2 260 49 468 328 41 26 chr12 5277736 5277931 -139004558 + MIR SINE MIR 63 260 -2 234 81 0 0 chr12 5278185 5278222 -139004267 + (CA)n Simple_repeat Simple_repeat 2 38 0 297 128 0 0 chr12 5278542 5278589 -139003900 + (A)n Simple_repeat Simple_repeat 1 47 0 257 217 12 72 chr12 5279164 5279247 -139003242 + MIR3 SINE MIR 124 201 -7 2978 148 24 16 chr12 5279277 5279776 -139002713 + MLT1D LTR MaLR 1 503 -2 354 249 141 68 chr12 5280063 5280240 -139002249 - MIR SINE MIR -58 204 15 796 243 15 5 chr12 5280316 5280495 -139001994 - MER5A DNA MER1_type -5 184 4 195 42 0 0 chr12 5281710 5281734 -139000755 + (GGGAA)n Simple_repeat Simple_repeat 3 26 0 326 186 12 0 chr12 5283389 5283475 -138999014 + (TAGA)n Simple_repeat Simple_repeat 4 90 0 271 222 83 14 chr12 5283567 5283639 -138998850 + MER5A DNA MER1_type 14 90 -99 180 156 94 94 chr12 5283585 5283649 -138998840 - MER5A DNA MER1_type -21 168 105 * 639 338 92 5 chr12 5283756 5284205 -138998284 - LTR16B LTR ERVL -13 451 1 735 281 52 8 chr12 5285303 5285552 -138996937 + MIR SINE MIR 3 262 0 182 170 0 21 chr12 5286338 5286385 -138996104 + G-rich Low_complexity Low_complexity 2 47 0 2869 19 0 0 chr12 5291537 5291850 -138990639 + AluYb8 SINE Alu 1 313 -5 208 327 28 37 chr12 5292123 5292230 -138990259 - L2 LINE L2 -14 3258 3153 593 121 30 0 chr12 5292563 5292662 -138989827 - MER58 DNA MER1_type -1 2419 2318 519 294 72 13 chr12 5293429 5293582 -138988907 - MIR3 SINE MIR -27 181 20 299 331 132 0 chr12 5293891 5294012 -138988477 - L2 LINE L2 0 3272 3136 845 83 0 18 chr12 5296173 5296282 -138986207 - AluSq/x SINE Alu -161 151 45 183 336 80 50 chr12 5296303 5296541 -138985948 + L2 LINE L2 3024 3268 -4 2270 71 0 20 chr12 5296972 5297308 -138985181 - AluY SINE Alu 0 311 17 190 305 68 0 chr12 5297555 5297614 -138984875 - L2 LINE L2 -24 3248 3186 333 0 0 0 chr12 5298147 5298184 -138984305 + (TG)n Simple_repeat Simple_repeat 2 38 0 2333 104 0 0 chr12 5298184 5298481 -138984008 - AluSx SINE Alu -15 297 1 230 193 35 0 chr12 5298913 5298970 -138983519 - MARNA DNA Mariner -134 452 394 302 286 82 59 chr12 5299340 5299595 -138982894 + MIR SINE MIR 2 262 0 1548 208 20 10 chr12 5300403 5300697 -138981792 + AluJo SINE Alu 1 297 -15 444 285 223 0 chr12 5300831 5301024 -138981465 + MIR SINE MIR 1 236 -26 617 239 189 25 chr12 5301252 5301495 -138980994 + L2 LINE L2 3025 3307 -6 181 318 71 48 chr12 5301543 5301669 -138980820 + L2 LINE L2 3132 3260 -12 215 289 0 0 chr12 5302515 5302560 -138979929 - L2 LINE L2 -18 3254 3210 417 244 67 17 chr12 5302610 5302729 -138979760 - MIR3 SINE MIR -83 125 1 1498 217 17 0 chr12 5303096 5303391 -138979098 + AluJo SINE Alu 1 300 -12 234 204 0 0 chr12 5304262 5304306 -138978183 - MIR3 SINE MIR -1 207 164 386 305 102 0 chr12 5304317 5304435 -138978054 - MER5A DNA MER1_type 0 189 60 640 282 31 31 chr12 5304870 5305065 -138977424 - MIR SINE MIR -60 202 8 236 204 20 0 chr12 5305476 5305525 -138976964 - MIR SINE MIR -5 257 208 180 0 0 0 chr12 5305529 5305549 -138976940 + (TTTTG)n Simple_repeat Simple_repeat 2 21 0 789 150 18 0 chr12 5305549 5305662 -138976827 - FLAM_C SINE Alu -23 120 6 666 263 70 0 chr12 5305667 5305853 -138976636 - MIR SINE MIR -49 213 15 217 313 16 0 chr12 5305844 5305908 -138976581 - L3b LINE CR1 -217 1366 1302 * 322 218 211 68 chr12 5305910 5306057 -138976432 - L2 LINE L2 0 3313 3146 429 253 104 33 chr12 5307474 5307656 -138974833 + MIR SINE MIR 3 197 -65 1037 295 43 19 chr12 5308017 5308393 -138974096 - MLT1I LTR MaLR 0 409 25 345 302 111 48 chr12 5308627 5308816 -138973673 - MIR3 SINE MIR -5 203 3 366 248 219 0 chr12 5309185 5309290 -138973199 + L2 LINE L2 3184 3311 -2 * 449 322 122 14 chr12 5309287 5309501 -138972988 - MIR SINE MIR -19 243 7 2266 89 7 0 chr12 5309541 5309845 -138972644 - AluSx SINE Alu -6 306 1 23 78 0 0 chr12 5309965 5310016 -138972473 + AT_rich Low_complexity Low_complexity 1 51 0 1725 189 3 0 chr12 5310041 5310337 -138972152 - AluJo SINE Alu -15 297 1 489 305 55 0 chr12 5311347 5311511 -138970978 + MIR SINE MIR 64 236 -26 1751 149 0 17 chr12 5311572 5311861 -138970628 - AluJb SINE Alu -24 288 5 209 247 206 0 chr12 5312457 5312530 -138969959 + MIR SINE MIR 46 133 -129 180 152 0 0 chr12 5313256 5313289 -138969200 + T-rich Low_complexity Low_complexity 5 37 0 325 279 126 9 chr12 5313291 5313402 -138969087 - L2 LINE L2 -9 3263 3140 368 285 132 51 chr12 5313545 5313736 -138968753 - MIR SINE MIR -58 204 5 225 341 53 59 chr12 5314126 5314304 -138968185 + MIR3 SINE MIR 9 199 -63 420 242 0 22 chr12 5314753 5314844 -138967645 - MIR3 SINE MIR -17 191 103 216 333 151 0 chr12 5315661 5315754 -138966735 - MIR SINE MIR -109 153 47 185 346 0 0 chr12 5317915 5317967 -138964522 + MIR SINE MIR 16 67 -141 244 340 19 9 chr12 5320568 5320674 -138961815 - L3b LINE CR1 -185 1398 1292 185 246 58 72 chr12 5320924 5320993 -138961496 + L2 LINE L2 3205 3272 0 493 201 235 40 chr12 5321694 5321843 -138960646 + MER5A DNA MER1_type 9 186 -3 765 243 21 21 chr12 5321854 5322043 -138960446 + MER5A DNA MER1_type 1 189 0 187 258 81 0 chr12 5322528 5322590 -138959899 + MIR3 SINE MIR 110 176 -32 403 334 91 29 chr12 5322720 5323103 -138959386 - L1MEd LINE L1 -5366 753 347 359 294 91 62 chr12 5324397 5324672 -138957817 + HAL1 LINE L1 2225 2507 0 351 60 0 0 chr12 5325029 5325079 -138957410 + (CA)n Simple_repeat Simple_repeat 2 51 0 354 271 241 15 chr12 5326180 5326383 -138956106 + MIR SINE MIR 14 262 0 213 151 0 0 chr12 5326844 5326897 -138955592 + T-rich Low_complexity Low_complexity 1 53 0 462 244 144 37 chr12 5328180 5328451 -138954038 + LTR33 LTR ERVL 222 521 0 291 303 23 61 chr12 5328534 5328666 -138953823 + L2 LINE L2 3142 3268 -4 441 0 0 0 chr12 5329886 5329935 -138952554 + (TG)n Simple_repeat Simple_repeat 1 49 0 561 192 0 10 chr12 5330620 5330724 -138951765 - FLAM_A SINE Alu -22 120 18 240 269 0 0 chr12 5332121 5332173 -138950316 + (TG)n Simple_repeat Simple_repeat 2 53 0 2567 210 149 117 chr12 5332231 5332753 -138949736 - L1MC3 LINE L1 -16 7769 7265 350 196 21 82 chr12 5332753 5332850 -138949639 - MLT1F1 LTR MaLR -442 125 35 2567 210 149 117 chr12 5332850 5333574 -138948915 - L1MC3 LINE L1 -520 7265 6384 1133 225 74 21 chr12 5333615 5333953 -138948536 - L1ME3A LINE L1 -3 6167 5812 323 296 62 6 chr12 5333952 5334131 -138948358 - L1ME4a LINE L1 -227 5894 5706 * 454 296 169 21 chr12 5334155 5334398 -138948091 + L3 LINE CR1 1023 1301 -276 286 274 127 45 chr12 5334590 5334747 -138947742 + L3 LINE CR1 1374 1543 -34 322 188 43 0 chr12 5334933 5335002 -138947487 + L1MB1 LINE L1 6082 6153 -36 274 128 0 39 chr12 5335300 5335378 -138947111 + (TATAA)n Simple_repeat Simple_repeat 5 79 0 1164 162 5 5 chr12 5335378 5335594 -138946895 - L1PA15 LINE L1 -12 6153 5938 2384 235 56 14 chr12 5335599 5336241 -138946248 - L1MC4a LINE L1 0 7808 7140 475 294 41 35 chr12 5337732 5337929 -138944560 + MIR SINE MIR 10 207 -55 196 259 161 25 chr12 5338261 5338342 -138944147 - MIR SINE MIR -73 135 44 318 283 40 10 chr12 5340065 5340164 -138942325 + MIR SINE MIR 135 236 -26 366 309 54 11 chr12 5340762 5340930 -138941559 - MIR3 SINE MIR -24 184 7 424 278 23 30 chr12 5341517 5341650 -138940839 + MIR SINE MIR 90 221 -41 282 309 58 22 chr12 5342732 5342871 -138939618 + MIR3 SINE MIR 4 147 -61 506 299 58 39 chr12 5343852 5344059 -138938430 - MIR SINE MIR -12 250 40 279 305 66 60 chr12 5345963 5346114 -138936375 + L2 LINE L2 3117 3268 -4 291 280 127 17 chr12 5346310 5346428 -138936061 - MIR3 SINE MIR -12 196 66 22 0 0 0 chr12 5346469 5346491 -138935998 + AT_rich Low_complexity Low_complexity 1 22 0 252 158 0 0 chr12 5347944 5348001 -138934488 + T-rich Low_complexity Low_complexity 1 57 0 4668 35 0 2 chr12 5348002 5348549 -138933940 - L1PA3 LINE L1 -1 6154 5609 3464 77 4 2 chr12 5348772 5349224 -138933265 + L1PA10 LINE L1 5665 6117 -51 213 344 0 0 chr12 5349622 5349683 -138932806 + MIR SINE MIR 49 109 -153 1684 241 77 42 chr12 5349689 5350427 -138932062 + L1ME2 LINE L1 3728 4491 -1655 2175 125 46 10 chr12 5350429 5351011 -138931478 - L1PB4 LINE L1 -547 5609 5015 3050 146 23 4 chr12 5351015 5351528 -138930961 + L1PB4 LINE L1 5622 6144 -12 2945 232 42 36 chr12 5351533 5352321 -138930168 + L1ME2 LINE L1 4477 5259 -905 1681 186 7 0 chr12 5352321 5352617 -138929872 - AluJb SINE Alu -14 298 1 2945 232 42 36 chr12 5352617 5353278 -138929211 + L1ME2 LINE L1 5259 5938 -226 2441 107 23 28 chr12 5353278 5353670 -138928819 + MLT1B LTR MaLR 1 390 0 2945 232 42 36 chr12 5353670 5353896 -138928593 + L1ME2 LINE L1 5938 6161 -3 341 311 93 7 chr12 5353896 5354047 -138928442 + MIR SINE MIR 92 255 -7 196 325 42 52 chr12 5354852 5355043 -138927446 + L2 LINE L2 2715 2903 -411 281 163 20 0 chr12 5355320 5355369 -138927120 + MER66A LTR ERV1 27 76 -402 337 314 122 0 chr12 5355550 5355722 -138926767 - MIR SINE MIR -24 238 46 205 182 0 23 chr12 5355926 5355970 -138926519 + CT-rich Low_complexity Low_complexity 1 43 0 390 42 0 0 chr12 5356212 5356260 -138926229 + (CA)n Simple_repeat Simple_repeat 2 49 0 679 303 79 45 chr12 5356801 5357204 -138925285 - MLT1K LTR MaLR -161 427 11 455 139 38 38 chr12 5357999 5358078 -138924411 + MER2 DNA MER2_type 1 79 -266 342 320 39 13 chr12 5358368 5358524 -138923965 - MIR SINE MIR -56 206 47 281 137 118 0 chr12 5358854 5358905 -138923584 - MLT2C1 LTR ERVL 0 520 464 43560 32 25 1 chr12 5358965 5364967 -138917522 - L1PA2 LINE L1 0 6155 4 979 151 104 5 chr12 5364968 5365160 -138917329 - Tigger1 DNA MER2_type -8 2410 2200 557 119 144 85 chr12 5365156 5365274 -138917215 - Tigger1 DNA MER2_type -2279 139 15 * 227 140 70 0 chr12 5365288 5365345 -138917144 + L1MC4 LINE L1 6641 6701 -1341 1787 180 30 3 chr12 5365364 5365697 -138916792 - MLT2C1 LTR ERVL -48 349 8 25357 202 29 26 chr12 5365703 5370186 -138912303 - ERVL-C2 LTR ERVL 0 5757 1289 2208 211 49 58 chr12 5370186 5370741 -138911748 + MLT2B3 LTR ERVL 1 550 -4 25357 202 29 26 chr12 5370741 5371713 -138910776 - ERVL-C2 LTR ERVL -4468 1289 177 279 0 0 0 chr12 5371713 5371744 -138910745 + (TTTTG)n Simple_repeat Simple_repeat 2 32 0 25357 202 29 26 chr12 5371744 5371915 -138910574 - ERVL-C2 LTR ERVL -5580 177 8 1964 151 47 114 chr12 5371915 5372404 -138910085 - MLT2C2 LTR ERVL -6 458 3 314 264 46 11 chr12 5372505 5372592 -138909897 + MLT1I LTR MaLR 320 409 0 588 206 73 30 chr12 5372820 5372985 -138909504 + MER5B DNA MER1_type 7 178 0 977 206 94 26 chr12 5375483 5375833 -138906656 + LTR37A LTR ERV1 53 426 0 222 284 136 23 chr12 5376458 5376546 -138905943 - MIR SINE MIR -5 257 160 188 298 0 0 chr12 5377633 5377690 -138904799 + L3 LINE CR1 404 460 -1117 197 0 71 0 chr12 5378247 5378275 -138904214 + (TTTTG)n Simple_repeat Simple_repeat 2 31 0 233 235 0 29 chr12 5378918 5378986 -138903503 + (CAGAGA)n Simple_repeat Simple_repeat 2 67 0 399 21 0 0 chr12 5379003 5379051 -138903438 + (CA)n Simple_repeat Simple_repeat 2 49 0 708 262 16 11 chr12 5379327 5379510 -138902979 + MIR SINE MIR 67 250 -12 490 308 50 6 chr12 5379526 5379685 -138902804 - MIR SINE MIR -75 187 22 1810 77 0 42 chr12 5379765 5380025 -138902464 - L1PB3 LINE L1 -154 6000 5752 956 212 0 0 chr12 5380507 5380677 -138901812 + AluJb SINE Alu 136 305 -7 219 236 0 18 chr12 5382079 5382134 -138900355 - MIR SINE MIR -67 141 88 2025 173 56 19 chr12 5382428 5382858 -138899631 - MER61C LTR ERV1 -1 433 4 593 272 44 11 chr12 5382931 5383111 -138899378 - MIR SINE MIR -70 192 7 331 288 68 41 chr12 5383929 5384148 -138898341 + L1MC5 LINE L1 7000 7224 -737 227 159 68 0 chr12 5384125 5384169 -138898320 + L1MC4 LINE L1 7201 7247 -795 * 430 263 63 99 chr12 5384179 5384769 -138897720 + L1MC5 LINE L1 7248 7733 -228 1854 141 41 63 chr12 5384986 5385216 -138897273 - MSTA LTR MaLR 0 428 207 2316 94 0 0 chr12 5385216 5385514 -138896975 - AluSc SINE Alu -7 302 5 1854 141 41 63 chr12 5385514 5385646 -138896843 - MSTA LTR MaLR -221 207 74 583 165 0 0 chr12 5385959 5386056 -138896433 - MSTA LTR MaLR -331 97 1 22 0 0 0 chr12 5386093 5386115 -138896374 + AT_rich Low_complexity Low_complexity 1 22 0 2318 44 0 0 chr12 5386122 5386395 -138896094 + AluY SINE Alu 35 307 -4 321 329 72 0 chr12 5386397 5386564 -138895925 - L1ME3A LINE L1 -300 5870 5692 279 344 32 0 chr12 5386580 5386737 -138895752 - L1ME3A LINE L1 -478 5643 5482 208 244 0 35 chr12 5386844 5386930 -138895559 + A-rich Low_complexity Low_complexity 2 84 0 727 259 144 19 chr12 5387663 5388169 -138894320 - L1ME3 LINE L1 -286 5880 5300 374 285 24 0 chr12 5388461 5388584 -138893905 - L1MA10 LINE L1 -3 6331 6206 654 141 10 10 chr12 5388587 5388686 -138893803 + FRAM SINE Alu 1 99 -77 344 307 40 74 chr12 5388698 5388734 -138893755 - L1MA10 LINE L1 -311 6001 5966 2868 209 34 61 chr12 5388734 5389090 -138893399 - L1MC4 LINE L1 -743 5403 5039 249 98 0 0 chr12 5389090 5389131 -138893358 + (CA)n Simple_repeat Simple_repeat 2 42 0 2868 209 34 61 chr12 5389131 5389331 -138893158 - L1MC4 LINE L1 -1107 5039 5492 2554 62 3 0 chr12 5389331 5389639 -138892850 - AluY SINE Alu -2 309 1 2868 209 34 61 chr12 5389639 5390396 -138892093 - L1MC4 LINE L1 -653 5493 4717 180 396 42 10 chr12 5391065 5391161 -138891328 - L2 LINE L2 -25 3247 3149 284 137 20 0 chr12 5392505 5392556 -138889933 + MER53 DNA DNA 138 189 0 286 293 57 19 chr12 5392728 5392834 -138889655 + L2 LINE L2 3195 3304 -9 1277 106 38 64 chr12 5392919 5393154 -138889335 - L1PA11 LINE L1 0 6174 5946 1692 141 39 0 chr12 5393154 5393437 -138889052 - L1P LINE L1 -1502 4644 4351 289 345 42 18 chr12 5397109 5397277 -138885212 - MIR3 SINE MIR -1 207 36 985 264 115 21 chr12 5397296 5397765 -138884724 + MER113 DNA MER1_type? 1 513 -8 181 343 29 20 chr12 5399278 5399380 -138883109 - MIR SINE MIR -63 145 43 557 253 28 50 chr12 5399987 5400169 -138882320 + MIR3 SINE MIR 9 186 -22 2672 233 82 17 chr12 5400654 5401763 -138880726 - MER69B DNA AcHobo 0 1226 1 233 204 0 0 chr12 5402075 5402119 -138880370 + L1ME LINE L1 5730 5773 -348 21 0 0 0 chr12 5402252 5402273 -138880216 + AT_rich Low_complexity Low_complexity 1 21 0 1424 223 38 11 chr12 5402452 5402739 -138879750 - AluJb SINE Alu -7 295 1 203 176 0 0 chr12 5402938 5402972 -138879517 + GA-rich Low_complexity Low_complexity 1 34 0 331 282 0 0 chr12 5404026 5404111 -138878378 - L2 LINE L2 -3 3310 3226 587 288 21 46 chr12 5405367 5405607 -138876882 - L1ME LINE L1 -314 5807 5574 263 299 11 35 chr12 5406172 5406259 -138876230 - L2 LINE L2 0 3272 3188 2523 197 85 4 chr12 5406459 5407001 -138875488 - L1MB7 LINE L1 -8 6176 5591 289 288 130 28 chr12 5407177 5407570 -138874919 - L1ME4a LINE L1 -209 5912 5480 318 373 15 0 chr12 5408074 5408208 -138874281 + L3b LINE CR1 1262 1397 -186 377 243 84 24 chr12 5408529 5408692 -138873797 - MIR SINE MIR -19 189 17 547 266 45 17 chr12 5408924 5409101 -138873388 + MIR SINE MIR 81 262 0 237 196 0 0 chr12 5409163 5409219 -138873270 + CT-rich Low_complexity Low_complexity 3 58 0 211 292 0 0 chr12 5409226 5409274 -138873215 - L2 LINE L2 -10 3262 3215 275 282 65 100 chr12 5409427 5409597 -138872892 - MIR3 SINE MIR -14 194 31 349 302 43 9 chr12 5410228 5410344 -138872145 + MIR SINE MIR 26 145 -63 189 0 0 0 chr12 5410479 5410500 -138871989 + (T)n Simple_repeat Simple_repeat 1 21 0 364 351 0 0 chr12 5411178 5411292 -138871197 + L2 LINE L2 3195 3308 -5 340 254 75 67 chr12 5412323 5412457 -138870032 - MIR SINE MIR -108 154 20 2353 35 0 3 chr12 5412734 5413052 -138869437 + AluY SINE Alu 1 317 0 234 224 20 0 chr12 5413989 5414038 -138868451 + L2 LINE L2 3137 3186 -86 195 250 133 0 chr12 5414906 5414966 -138867523 - MIR SINE MIR -95 113 46 794 218 93 5 chr12 5415029 5415222 -138867267 + MER44D DNA MER2_type 1 480 -129 233 234 0 0 chr12 5416335 5416382 -138866107 + L2 LINE L2 3225 3271 -1 1241 249 23 26 chr12 5416802 5417144 -138865345 - L1ME1 LINE L1 -18 6148 5808 3085 130 45 2 chr12 5417165 5417649 -138864840 - L1PB2 LINE L1 -1 6150 5646 1218 250 56 75 chr12 5417649 5418061 -138864428 - MLT2B3 LTR ERVL 0 554 151 2666 43 19 0 chr12 5418063 5418385 -138864104 - L1PA7 LINE L1 -246 5908 5581 531 300 37 16 chr12 5418949 5419139 -138863350 - MIR3 SINE MIR -7 201 8 952 316 8 0 chr12 5419308 5419564 -138862925 - MIR SINE MIR -4 258 1 302 267 37 82 chr12 5420604 5420739 -138861750 - L2 LINE L2 0 3313 3185 416 285 48 42 chr12 5420765 5420930 -138861559 - MIR3 SINE MIR -27 181 16 330 333 26 52 chr12 5421035 5421188 -138861301 - L3b LINE CR1 -136 1447 1299 187 316 119 18 chr12 5421544 5421712 -138860777 + MIR SINE MIR 7 191 -71 1759 152 19 13 chr12 5421834 5422144 -138860345 - AluSx SINE Alu 0 312 1 357 301 78 0 chr12 5422320 5422423 -138860066 + L2 LINE L2 3203 3313 0 243 299 31 21 chr12 5422679 5422776 -138859713 - MIR3 SINE MIR -2 206 109 1919 119 0 33 chr12 5423589 5423892 -138858597 + AluSg SINE Alu 1 293 -17 2018 129 3 0 chr12 5424435 5424746 -138857743 - AluSx SINE Alu 0 312 1 599 289 34 5 chr12 5425393 5425597 -138856892 - ERVL LTR ERVL -3793 1971 1762 2317 81 0 0 chr12 5425741 5426069 -138856420 + AluY SINE Alu 1 311 0 334 289 82 59 chr12 5426956 5427226 -138855263 - ERVL LTR ERVL -5142 622 347 696 198 96 0 chr12 5427582 5427739 -138854750 + MER45C DNA AcHobo 25 196 -757 212 86 29 0 chr12 5428253 5428288 -138854201 + (TTTTG)n Simple_repeat Simple_repeat 2 37 0 267 318 12 0 chr12 5429187 5429272 -138853217 + GA-rich Low_complexity Low_complexity 3 88 0 25 65 0 0 chr12 5429504 5429550 -138852939 + AT_rich Low_complexity Low_complexity 1 46 0 1151 244 70 45 chr12 5430060 5430416 -138852073 - MLT1A2 LTR MaLR -4 370 6 1182 291 154 28 chr12 5431447 5432503 -138849986 - L2 LINE L2 0 3313 2111 566 275 16 11 chr12 5432508 5432690 -138849799 - MER117 DNA MER1_type -5 192 10 779 156 133 64 chr12 5432888 5433019 -138849470 + MER5A DNA MER1_type 3 150 -39 1449 156 122 0 chr12 5433019 5433289 -138849200 - AluSx SINE Alu -9 303 1 779 156 133 64 chr12 5433289 5433330 -138849159 + MER5A DNA MER1_type 150 187 -2 316 311 149 19 chr12 5433856 5434017 -138848472 + MIR SINE MIR 21 202 -60 1030 202 160 93 chr12 5434082 5434533 -138847956 + MLT1D LTR MaLR 21 501 -4 180 210 99 62 chr12 5435386 5435467 -138847022 + L2 LINE L2 476 559 -2755 401 331 86 43 chr12 5436373 5436571 -138845918 - L3b LINE CR1 0 1583 1368 937 167 6 13 chr12 5436571 5436727 -138845762 + FRAM SINE Alu 1 155 -11 401 331 86 43 chr12 5436727 5436806 -138845683 - L3b LINE CR1 -215 1368 1294 180 250 25 75 chr12 5437140 5437220 -138845269 - L3 LINE CR1 -143 1434 1359 590 276 20 15 chr12 5437459 5437655 -138844834 + MER117 DNA MER1_type 1 197 0 184 200 29 0 chr12 5437725 5437760 -138844729 + L2 LINE L2 3230 3265 -7 2335 75 0 3 chr12 5438625 5438931 -138843558 + AluY SINE Alu 1 305 -6 591 232 187 25 chr12 5438993 5439191 -138843298 + MIR SINE MIR 31 260 -2 430 99 127 0 chr12 5439258 5439329 -138843160 + MADE1 DNA Mariner 1 80 0 402 39 0 0 chr12 5440028 5440080 -138842409 + (TG)n Simple_repeat Simple_repeat 1 52 0 273 57 0 0 chr12 5440080 5440115 -138842374 + (GA)n Simple_repeat Simple_repeat 2 36 0 213 260 0 115 chr12 5441809 5441905 -138840584 + L3b LINE CR1 1180 1264 -319 1679 232 127 12 chr12 5444976 5445471 -138837018 - MLT1H1 LTR MaLR -2 553 2 236 259 23 76 chr12 5447160 5447186 -138835303 - L1MC4 LINE L1 -1304 6738 6712 321 26 0 0 chr12 5447186 5447224 -138835265 + (TG)n Simple_repeat Simple_repeat 2 39 0 236 259 23 76 chr12 5447224 5447328 -138835161 - L1MC4 LINE L1 -1330 6712 6615 260 246 29 0 chr12 5447362 5447431 -138835058 + GA-rich Low_complexity Low_complexity 4 74 0 461 239 101 112 chr12 5447448 5447875 -138834614 + MLT1J1 LTR MaLR 1 422 -24 242 325 36 0 chr12 5448250 5448333 -138834156 + L3 LINE CR1 1405 1490 -87 641 104 21 10 chr12 5448342 5448438 -138834051 + AluSc SINE Alu 198 294 -15 2376 41 24 0 chr12 5448507 5448797 -138833692 - AluY SINE Alu -2 309 13 214 200 0 0 chr12 5450208 5450248 -138832241 + A-rich Low_complexity Low_complexity 1 40 0 259 282 87 68 chr12 5450477 5450580 -138831909 + L2 LINE L2 3143 3247 -25 650 289 122 28 chr12 5450590 5450950 -138831539 + MLT1I LTR MaLR 14 407 -2 483 18 0 0 chr12 5450975 5451031 -138831458 + (TGAA)n Simple_repeat Simple_repeat 3 58 0 266 319 106 28 chr12 5451220 5451361 -138831128 - L2 LINE L2 -22 3291 3140 1496 179 0 14 chr12 5451676 5451955 -138830534 + AluJb SINE Alu 1 275 -37 221 352 51 40 chr12 5452006 5452182 -138830307 - L2 LINE L2 -555 2759 2582 335 250 202 58 chr12 5453698 5453886 -138828603 - MIR SINE MIR -41 221 7 1525 194 19 10 chr12 5454174 5454459 -138828030 + AluJb SINE Alu 1 292 -128 294 29 0 0 chr12 5454459 5454494 -138827995 + (GGAA)n Simple_repeat Simple_repeat 2 36 0 1525 194 19 10 chr12 5454494 5454625 -138827864 + AluJb SINE Alu 292 420 0 498 185 19 0 chr12 5454517 5454808 -138827681 + GA-rich Low_complexity Low_complexity 4 296 0 270 152 103 52 chr12 5456263 5456381 -138826108 - MIR SINE MIR -64 144 30 286 277 12 24 chr12 5456712 5456795 -138825694 + MIR SINE MIR 22 103 -105 1339 208 75 13 chr12 5461467 5461775 -138820714 + L1ME3 LINE L1 5825 6151 -11 22 0 0 0 chr12 5462042 5462064 -138820425 + AT_rich Low_complexity Low_complexity 1 22 0 2336 160 149 9 chr12 5463348 5463811 -138818678 + MER74A LTR ERVL 1 528 -30 363 23 0 0 chr12 5464376 5464420 -138818069 + (CA)n Simple_repeat Simple_repeat 2 45 0 406 292 32 50 chr12 5465747 5465966 -138816523 + LTR16C LTR ERVL 253 467 -24 760 284 34 13 chr12 5466571 5466807 -138815682 + LTR16A1 LTR ERVL 217 457 0 601 289 69 28 chr12 5466998 5467216 -138815273 + MIR SINE MIR 20 246 -16 299 158 103 137 chr12 5470308 5470454 -138812035 - MIR SINE MIR -66 142 2 1682 159 18 4 chr12 5470941 5471217 -138811272 - MLT1A1 LTR MaLR 0 365 86 2760 148 31 67 chr12 5471217 5471414 -138811075 - LTR26B LTR ERV1 0 531 328 2168 110 62 39 chr12 5471414 5471770 -138810719 - THE1B LTR MaLR 0 364 1 2760 148 31 67 chr12 5471770 5472094 -138810395 - LTR26B LTR ERV1 -203 328 29 1225 167 155 8 chr12 5472095 5472258 -138810231 - AluJb SINE Alu -16 296 158 503 62 0 104 chr12 5472258 5472354 -138810135 - L1PA5 LINE L1 0 6154 6069 1225 167 155 8 chr12 5472354 5472448 -138810041 - AluJb SINE Alu -154 158 1 322 51 0 0 chr12 5472448 5472487 -138810002 - LTR26B LTR ERV1 -492 39 1 406 176 47 24 chr12 5472490 5472575 -138809914 - MLT1A1 LTR MaLR -287 87 1 344 310 64 19 chr12 5472584 5472772 -138809717 - MIR3 SINE MIR -52 210 3 187 122 0 98 chr12 5474011 5474052 -138808437 - MIR SINE MIR -136 72 36 314 317 106 57 chr12 5474598 5474967 -138807522 + L2 LINE L2 2886 3272 0 302 302 9 9 chr12 5474980 5475086 -138807403 - MER69 DNA AcHobo 0 2526 2421 266 277 88 36 chr12 5476611 5476748 -138805741 + MIR3 SINE MIR 3 146 -62 198 231 0 0 chr12 5476862 5476901 -138805588 + L2 LINE L2 3255 3293 -20 195 268 0 0 chr12 5476868 5476909 -138805580 + MIR SINE MIR 216 256 -6 * 258 32 0 0 chr12 5477694 5477725 -138804764 + (TTA)n Simple_repeat Simple_repeat 3 33 0 1862 126 7 3 chr12 5477734 5478019 -138804470 - AluSg SINE Alu -24 286 1 1073 81 0 0 chr12 5478019 5478155 -138804334 - AluSq/x SINE Alu -176 136 1 261 277 41 89 chr12 5478450 5478624 -138803865 - MIR SINE MIR -63 145 21 319 222 41 12 chr12 5478658 5478829 -138803660 + (TA)n Simple_repeat Simple_repeat 1 176 0 317 200 12 71 chr12 5480409 5480494 -138801995 + MIR SINE MIR 101 180 -82 508 274 95 37 chr12 5480904 5481094 -138801395 - MIR SINE MIR -42 220 20 234 279 15 0 chr12 5482409 5482477 -138800012 - MARNA DNA Mariner -106 480 412 1908 101 62 7 chr12 5484255 5484543 -138797946 + AluSx SINE Alu 1 304 -8 270 0 0 0 chr12 5484678 5484708 -138797781 + (TG)n Simple_repeat Simple_repeat 2 31 0 262 291 45 22 chr12 5485218 5485352 -138797137 - MLT1J2 LTR MaLR -239 211 75 277 288 101 88 chr12 5486508 5486963 -138795526 + L2 LINE L2 2812 3272 0 1569 151 7 53 chr12 5488061 5488365 -138794124 - AluJo SINE Alu -22 290 1 441 147 11 53 chr12 5488500 5488595 -138793894 + MIR SINE MIR 61 151 -111 1743 205 108 24 chr12 5488957 5489382 -138793107 - MLT1C LTR MaLR -6 461 1 203 250 59 29 chr12 5489424 5489492 -138792997 - MIR SINE MIR -89 173 104 391 284 57 28 chr12 5489566 5489742 -138792747 + MER5A DNA MER1_type 3 183 -6 318 258 76 61 chr12 5492714 5492846 -138789643 - L2 LINE L2 0 3313 3180 2057 101 7 16 chr12 5493079 5493386 -138789103 - AluY SINE Alu -7 304 1 777 269 111 1 chr12 5493628 5493839 -138788650 + MIR SINE MIR 5 237 -25 722 213 8 130 chr12 5493952 5494191 -138788298 - MER63A DNA MER1_type 0 210 1 28 79 0 0 chr12 5494668 5494731 -138787758 + AT_rich Low_complexity Low_complexity 1 63 0 778 288 30 13 chr12 5494794 5495030 -138787459 - MIR SINE MIR -2 260 21 654 141 67 15 chr12 5495045 5495180 -138787309 + Ricksha_a DNA DNA 12 153 -1028 * 5539 190 49 51 chr12 5495148 5495916 -138786573 + Ricksha DNA DNA 1712 2481 -765 2322 68 0 0 chr12 5495916 5496233 -138786256 - AluY SINE Alu 0 317 1 5539 190 49 51 chr12 5496233 5496999 -138785490 + Ricksha DNA DNA 2481 3246 0 410 232 176 0 chr12 5497181 5497306 -138785183 + MER96 DNA MER1_type? 27 173 -2 5504 150 27 9 chr12 5497539 5498468 -138784021 - L1MA9 LINE L1 0 6312 5367 308 263 38 98 chr12 5498905 5499038 -138783451 + MIR3 SINE MIR 76 200 -8 205 265 0 0 chr12 5499332 5499381 -138783108 - L2 LINE L2 -1 3312 3264 345 321 0 0 chr12 5499528 5499612 -138782877 - L2 LINE L2 -2 3270 3187 2888 117 2 9 chr12 5499662 5500091 -138782398 + L1PB3 LINE L1 5726 6151 -3 1070 211 5 10 chr12 5500579 5500788 -138781701 - MLT1C LTR MaLR -3 464 257 1729 202 123 40 chr12 5500903 5501342 -138781147 + MLT2B1 LTR ERVL 1 485 -35 213 39 0 0 chr12 5501342 5501368 -138781121 + (CA)n Simple_repeat Simple_repeat 2 27 0 1729 202 123 40 chr12 5501368 5501408 -138781081 + MLT2B1 LTR ERVL 485 520 0 663 301 85 4 chr12 5502448 5502684 -138779805 + MIR SINE MIR 5 259 -3 420 236 14 64 chr12 5502790 5502930 -138779559 - MIR3 SINE MIR 0 208 76 430 352 103 53 chr12 5502941 5503945 -138778544 - L2 LINE L2 -15 3257 2304 2376 72 10 0 chr12 5503945 5504252 -138778237 + AluY SINE Alu 1 310 -1 430 352 103 53 chr12 5504252 5505096 -138777393 - L2 LINE L2 -968 2304 1293 232 239 0 0 chr12 5505106 5505152 -138777337 - MIR SINE MIR -130 78 33 1431 174 83 0 chr12 5506189 5506454 -138776035 + AluJo SINE Alu 1 287 -25 957 271 161 21 chr12 5506532 5506967 -138775522 - MLT1H1 LTR MaLR -19 536 41 693 272 62 38 chr12 5507508 5507966 -138774523 + MLT1H LTR MaLR 22 587 -3 1052 175 18 51 chr12 5508542 5508759 -138773730 + MER20 DNA MER1_type 7 216 -3 1773 237 45 30 chr12 5508895 5509422 -138773067 + L1M4 LINE L1 3449 3983 -2163 6516 79 6 12 chr12 5509441 5510318 -138772171 + L1PA10 LINE L1 5298 6168 0 330 47 0 0 chr12 5510318 5510361 -138772128 - MADE1 DNA Mariner -37 43 1 346 330 51 24 chr12 5510410 5510601 -138771888 + MIR SINE MIR 7 206 -56 1259 167 0 5 chr12 5512202 5512406 -138770083 - AluSg/x SINE Alu -14 298 96 318 303 148 12 chr12 5513370 5513532 -138768957 + MIR3 SINE MIR 12 195 -13 2233 88 0 63 chr12 5513695 5514012 -138768477 - AluY SINE Alu -14 297 1 502 270 33 20 chr12 5514268 5514420 -138768069 - MIR3 SINE MIR -9 199 46 668 282 39 0 chr12 5515863 5516069 -138766420 - MIR SINE MIR 0 262 49 259 362 65 7 chr12 5516123 5516261 -138766228 - MIR3 SINE MIR -62 146 1 287 306 9 28 chr12 5516654 5516762 -138765727 - MIR SINE MIR -78 184 79 1231 287 132 30 chr12 5516771 5517684 -138764805 + L2 LINE L2 2326 3313 0 449 273 27 21 chr12 5518671 5518820 -138763669 + MIR SINE MIR 16 163 -63 268 311 168 19 chr12 5519587 5519748 -138762741 + MIR SINE MIR 53 237 -25 189 107 0 0 chr12 5520198 5520226 -138762263 + (TG)n Simple_repeat Simple_repeat 1 28 0 6365 58 1 11 chr12 5523311 5524135 -138758354 - L1PA5 LINE L1 0 6154 5364 226 279 135 0 chr12 5524135 5524239 -138758250 - MER113 DNA MER1_type? -176 345 228 253 292 35 42 chr12 5524338 5524482 -138758007 + L1ME LINE L1 4055 4197 -1949 352 300 118 30 chr12 5524578 5525051 -138757438 + L1ME LINE L1 4330 4844 -1302 328 315 88 21 chr12 5525095 5525333 -138757156 + L1ME LINE L1 5017 5270 -876 315 319 98 43 chr12 5525418 5525766 -138756723 + L1ME LINE L1 5384 5750 -412 396 295 23 66 chr12 5525779 5526037 -138756452 + L2 LINE L2 3006 3252 -61 43603 32 24 2 chr12 5527479 5533497 -138748992 - L1PA3 LINE L1 0 6155 1 1546 196 76 25 chr12 5534065 5534432 -138748057 + MLT1B LTR MaLR 5 390 0 278 249 68 79 chr12 5535213 5535390 -138747099 - MIR3 SINE MIR 0 208 34 459 325 39 10 chr12 5536766 5536972 -138745517 - LTR16A LTR ERVL -101 349 138 225 277 15 0 chr12 5537020 5537085 -138745404 - LTR16A1 LTR ERVL -319 138 73 623 286 40 0 chr12 5537106 5537281 -138745208 + MIR3 SINE MIR 21 202 -6 1547 158 104 188 chr12 5537701 5538519 -138743970 - Zaphod DNA AcHobo -1 4030 3282 945 285 0 12 chr12 5538520 5538762 -138743727 - Zaphod DNA AcHobo -3383 648 410 546 196 0 0 chr12 5538769 5538866 -138743623 + FLAM_A SINE Alu 34 130 -12 976 303 110 16 chr12 5538866 5539249 -138743240 - Zaphod DNA AcHobo -3604 427 9 228 350 50 25 chr12 5539357 5539477 -138743012 + L2 LINE L2 2620 2742 -572 210 150 0 0 chr12 5539486 5539526 -138742963 + (A)n Simple_repeat Simple_repeat 1 40 0 302 367 33 37 chr12 5539552 5539767 -138742722 + L2 LINE L2 2764 2977 -337 246 294 89 0 chr12 5540152 5540269 -138742220 + MIR SINE MIR 45 178 -69 1970 159 0 13 chr12 5540337 5540652 -138741837 + AluSx SINE Alu 1 311 -1 180 347 13 27 chr12 5541146 5541221 -138741268 + MIR3 SINE MIR 126 199 -9 21 36 0 0 chr12 5541243 5541271 -138741218 + AT_rich Low_complexity Low_complexity 1 28 0 357 380 28 6 chr12 5541517 5541696 -138740793 + MIR SINE MIR 20 202 -60 364 302 85 32 chr12 5543381 5543570 -138738919 - MIR SINE MIR -15 247 49 338 138 0 62 chr12 5544041 5544106 -138738383 - L2 LINE L2 -1085 2229 2169 740 287 38 43 chr12 5544741 5545163 -138737326 + L1MCc LINE L1 35 454 -5969 662 319 101 18 chr12 5545617 5546160 -138736329 + HAL1b LINE L1 53 640 -708 1710 231 150 67 chr12 5546495 5547458 -138735031 + L1MC5 LINE L1 6505 7530 -431 338 296 52 35 chr12 5547541 5547713 -138734776 + L1ME3A LINE L1 5987 6161 -9 209 262 19 37 chr12 5547717 5547824 -138734665 + (TATG)n Simple_repeat Simple_repeat 4 108 0 * 222 298 12 12 chr12 5547744 5547828 -138734661 + (TCTG)n Simple_repeat Simple_repeat 4 87 0 298 341 6 17 chr12 5548370 5548543 -138733946 + GA-rich Low_complexity Low_complexity 4 174 0 511 270 0 16 chr12 5549470 5549596 -138732893 + L2 LINE L2 3190 3313 0 581 276 13 84 chr12 5550026 5550251 -138732238 - MIR SINE MIR -5 257 49 263 296 281 0 chr12 5550401 5550604 -138731885 - MIR SINE MIR -1 261 2 203 226 19 19 chr12 5551100 5551153 -138731336 - L2 LINE L2 -3 3269 3217 418 310 78 0 chr12 5551347 5551499 -138730990 + MIR3 SINE MIR 33 197 -11 214 246 31 0 chr12 5552612 5552677 -138729812 - MIR SINE MIR -48 214 148 21 0 0 0 chr12 5553503 5553524 -138728965 + AT_rich Low_complexity Low_complexity 1 21 0 206 146 36 18 chr12 5553991 5554046 -138728443 + T-rich Low_complexity Low_complexity 4 59 0 353 252 131 44 chr12 5555247 5555453 -138727036 + MER5C DNA MER1_type 86 309 -15 324 207 133 30 chr12 5555534 5555669 -138726820 + MER103 DNA DNA 8 156 -10 1093 254 87 61 chr12 5555999 5556197 -138726292 + MLT1J LTR MaLR 3 194 -317 1954 97 23 0 chr12 5556197 5556454 -138726035 + AluSc SINE Alu 44 306 -3 1093 254 87 61 chr12 5556454 5556715 -138725774 + MLT1J LTR MaLR 194 474 -37 217 159 23 0 chr12 5556715 5556759 -138725730 + T-rich Low_complexity Low_complexity 2 46 0 2493 230 63 35 chr12 5556790 5557544 -138724945 - L1M4 LINE L1 -5720 822 5 924 283 79 41 chr12 5558057 5558425 -138724064 + L2 LINE L2 2157 2538 -776 1473 300 40 30 chr12 5558740 5559502 -138722987 + L2 LINE L2 2543 3313 0 334 291 39 0 chr12 5560413 5560516 -138721973 - MER103 DNA DNA -57 109 3 440 211 112 59 chr12 5560579 5560731 -138721758 + MER20B DNA MER1_type 43 202 -17 285 348 50 14 chr12 5560777 5560918 -138721571 - MIR3 SINE MIR -58 150 5 549 302 77 32 chr12 5561087 5561328 -138721161 - MIR SINE MIR -6 256 7 1823 176 10 3 chr12 5561939 5562246 -138720243 + AluSx SINE Alu 1 309 -3 10321 153 35 17 chr12 5562250 5565222 -138717267 + L1MA5 LINE L1 3046 6065 -235 4788 75 11 11 chr12 5565233 5565885 -138716604 - L1PA11 LINE L1 0 6174 5523 2032 218 54 41 chr12 5567417 5568467 -138714022 - L1MEc LINE L1 -3333 2882 1844 234 227 106 0 chr12 5568675 5568741 -138713748 - L1MC/D LINE L1 -1999 5809 5737 318 252 102 95 chr12 5568973 5569120 -138713369 - MIR3 SINE MIR -28 180 33 283 275 41 141 chr12 5569157 5569376 -138713113 - L3 LINE CR1 -9 1568 1379 2410 66 0 7 chr12 5569376 5569679 -138712810 + AluY SINE Alu 1 301 -10 283 275 41 141 chr12 5569679 5569728 -138712761 - L3 LINE CR1 -198 1379 1327 991 319 130 45 chr12 5569763 5570234 -138712255 - L3 LINE CR1 -412 1165 735 1533 192 0 17 chr12 5570234 5570531 -138711958 + AluJo SINE Alu 1 292 -20 2097 83 0 0 chr12 5570532 5570798 -138711691 + AluSc SINE Alu 44 309 0 991 319 130 45 chr12 5570798 5571094 -138711395 - L3 LINE CR1 -841 736 331 21 0 0 0 chr12 5571195 5571216 -138711273 + AT_rich Low_complexity Low_complexity 1 21 0 210 240 60 0 chr12 5572252 5572302 -138710187 + MIR3 SINE MIR 118 170 -38 882 204 21 5 chr12 5572375 5572561 -138709928 - MER5A DNA MER1_type 0 189 1 1119 198 107 0 chr12 5572622 5572865 -138709624 + Tigger4(Zombi) DNA MER2_type 1 269 -2462 1249 127 23 18 chr12 5572866 5573087 -138709402 + Tigger4(Zombi) DNA MER2_type 2510 2731 0 354 302 112 9 chr12 5573884 5574000 -138708489 - L2 LINE L2 -6 3266 3139 346 245 54 68 chr12 5575171 5575318 -138707171 + MER63A DNA MER1_type 61 205 -5 4073 113 9 3 chr12 5576663 5577300 -138705189 - L1PA16 LINE L1 -180 5986 5346 762 192 13 0 chr12 5577294 5577445 -138705044 + L1PA16 LINE L1 5994 6146 -20 * 30 59 0 0 chr12 5577449 5577500 -138704989 + AT_rich Low_complexity Low_complexity 1 51 0 639 251 24 86 chr12 5578013 5578268 -138704221 - MIR SINE MIR -3 259 21 22 35 0 0 chr12 5579131 5579160 -138703329 + AT_rich Low_complexity Low_complexity 1 29 0 206 240 0 20 chr12 5579427 5579477 -138703012 + CT-rich Low_complexity Low_complexity 3 51 0 241 336 112 0 chr12 5579666 5579782 -138702707 + L2 LINE L2 3137 3265 -7 2129 132 0 19 chr12 5580044 5580362 -138702127 + AluSx SINE Alu 1 312 0 1377 201 27 20 chr12 5580606 5580904 -138701585 + AluJo SINE Alu 1 300 -12 200 291 0 0 chr12 5580988 5581043 -138701446 + CT-rich Low_complexity Low_complexity 5 59 0 571 314 114 37 chr12 5581362 5581799 -138700690 + L3 LINE CR1 811 1281 -296 319 302 85 0 chr12 5581981 5582110 -138700379 - MIR SINE MIR -42 220 81 7091 48 14 0 chr12 5582530 5584154 -138698335 + L1PA7 LINE L1 4517 6152 -2 4683 168 7 8 chr12 5584404 5585296 -138697193 - L1MB7 LINE L1 -1 6183 5293 285 235 286 8 chr12 5586952 5587071 -138695418 + MIR3 SINE MIR 54 205 -3 241 285 73 73 chr12 5587074 5587225 -138695264 + L3b LINE CR1 1293 1443 -140 1810 141 3 37 chr12 5587287 5587586 -138694903 - AluJo SINE Alu -23 289 1 185 214 24 0 chr12 5588209 5588251 -138694238 + L2 LINE L2 3263 3305 -8 392 273 31 72 chr12 5588705 5588899 -138693590 + MIR3 SINE MIR 20 205 -3 461 224 34 84 chr12 5589022 5589201 -138693288 - L2 LINE L2 0 3313 3144 310 359 60 8 chr12 5590187 5590304 -138692185 + L2 LINE L2 3150 3272 0 231 303 8 59 chr12 5590312 5590431 -138692058 - MIR SINE MIR -60 202 90 306 232 0 0 chr12 5591456 5591525 -138690964 - MER96 DNA MER1_type? 0 175 107 25 0 0 0 chr12 5591742 5591767 -138690722 + AT_rich Low_complexity Low_complexity 1 25 0 2764 236 68 50 chr12 5592287 5593230 -138689259 + L1MB7 LINE L1 16 975 -5567 * 6524 239 52 41 chr12 5593228 5595573 -138686916 + L1MB7 LINE L1 813 3131 -3551 1205 215 79 27 chr12 5595573 5595940 -138686549 + MLT1B LTR MaLR 5 390 0 6524 239 52 41 chr12 5595940 5599266 -138683223 + L1MB7 LINE L1 3131 6620 -62 465 250 183 11 chr12 5599328 5599508 -138682981 - MLT1K LTR MaLR -2 586 376 326 247 153 24 chr12 5599546 5599631 -138682858 - MLT1K LTR MaLR -323 265 174 8642 117 8 30 chr12 5599922 5600607 -138681882 - Tigger1 DNA MER2_type 0 2418 1778 1567 194 3 48 chr12 5600607 5600922 -138681567 - AluJo SINE Alu -11 301 1 8642 117 8 30 chr12 5600922 5601646 -138680843 - Tigger1 DNA MER2_type -640 1778 1040 307 64 0 0 chr12 5601656 5601703 -138680786 + Alu SINE Alu 255 301 0 692 246 77 16 chr12 5601728 5601976 -138680513 + MLT1C LTR MaLR 205 467 0 2256 119 0 3 chr12 5602032 5602439 -138680050 + AluSg SINE Alu 1 406 0 1672 145 68 43 chr12 5602851 5603203 -138679286 - MER46B DNA MER2_type 0 236 1 905 174 56 0 chr12 5603842 5604020 -138678469 + L1MD3 LINE L1 7797 7984 -11 209 32 0 32 chr12 5604036 5604067 -138678422 + (TTTTG)n Simple_repeat Simple_repeat 1 30 0 465 254 8 54 chr12 5604843 5604973 -138677516 - MIR SINE MIR -75 187 64 252 281 79 36 chr12 5605323 5605462 -138677027 - MIR SINE MIR -116 146 2 221 139 23 0 chr12 5605577 5605620 -138676869 + (TGAA)n Simple_repeat Simple_repeat 2 45 0 437 255 94 13 chr12 5605762 5605911 -138676578 + MIR3 SINE MIR 27 187 -21 285 303 193 0 chr12 5607370 5607489 -138675000 - L2 LINE L2 -239 3033 2892 216 67 0 0 chr12 5607651 5607681 -138674808 + (TTG)n Simple_repeat Simple_repeat 2 31 0 2757 168 24 9 chr12 5608040 5608581 -138673908 + L1MC1 LINE L1 5481 6029 -304 676 189 13 38 chr12 5608590 5608749 -138673740 - L1PB3 LINE L1 -4 6150 5996 2789 60 2 50 chr12 5608879 5609282 -138673207 + L1PA7 LINE L1 5769 6152 -2 1723 184 14 0 chr12 5610808 5611086 -138671403 + AluJo SINE Alu 1 282 -30 833 185 0 0 chr12 5610951 5611088 -138671401 + AluJo/FRAM SINE Alu 148 308 0 196 42 0 0 chr12 5611088 5611112 -138671377 + (TAAA)n Simple_repeat Simple_repeat 2 136 0 21 0 0 0 chr12 5611239 5611260 -138671229 + AT_rich Low_complexity Low_complexity 1 21 0 389 328 107 74 chr12 5611349 5611752 -138670737 + L2 LINE L2 2837 3252 -20 2073 171 95 16 chr12 5611795 5612228 -138670261 - MER63C DNA MER1_type -28 902 436 243 0 0 0 chr12 5612228 5612255 -138670234 + (CA)n Simple_repeat Simple_repeat 2 28 0 1937 221 25 2 chr12 5612259 5612657 -138669832 - MER63C DNA MER1_type -521 409 3 187 355 37 45 chr12 5612695 5612937 -138669552 - L2 LINE L2 -217 3055 2816 207 0 0 0 chr12 5614269 5614292 -138668197 + (CA)n Simple_repeat Simple_repeat 2 24 0 2063 118 31 3 chr12 5614504 5614792 -138667697 - AluSx SINE Alu -16 296 1 2286 113 0 0 chr12 5615328 5615637 -138666852 - AluSq SINE Alu 0 313 5 293 209 9 118 chr12 5616160 5616270 -138666219 - L2 LINE L2 -3 3310 3213 471 241 68 0 chr12 5616471 5616604 -138665885 - MIR SINE MIR -12 250 109 2007 148 0 10 chr12 5618480 5618785 -138663704 + AluSx SINE Alu 1 302 -10 245 251 11 109 chr12 5618973 5619156 -138663333 + HAL1b LINE L1 78 242 -1106 883 212 75 37 chr12 5619470 5619711 -138662778 - MLT1K LTR MaLR -13 575 326 283 327 184 0 chr12 5619731 5619899 -138662590 - MLT1K LTR MaLR -389 199 1 212 302 12 12 chr12 5620385 5620471 -138662018 - MIR3 SINE MIR -41 167 82 264 306 36 36 chr12 5620506 5620617 -138661872 + MIR SINE MIR 17 127 -81 1384 71 0 0 chr12 5621630 5621798 -138660691 - AluY SINE Alu 0 311 144 229 289 99 49 chr12 5621886 5622028 -138660461 + MIR3 SINE MIR 2 114 -94 627 248 12 12 chr12 5623079 5623240 -138659249 + MER97a DNA MER1_type? 19 179 -715 242 239 28 28 chr12 5623343 5623414 -138659075 - L2 LINE L2 -2 3270 3200 1284 219 107 44 chr12 5623972 5624186 -138658303 - Charlie4a DNA MER1_type -1454 507 308 3223 83 42 16 chr12 5624186 5624231 -138658258 - MLT2A1 LTR ERVL 0 444 402 315 0 0 0 chr12 5624231 5624266 -138658223 + (CA)n Simple_repeat Simple_repeat 2 36 0 3223 83 42 16 chr12 5624266 5624653 -138657836 - MLT2A1 LTR ERVL -42 402 1 1284 219 107 44 chr12 5624653 5624914 -138657575 - Charlie4a DNA MER1_type -1653 308 2 268 268 42 14 chr12 5626154 5626225 -138656264 - MIR3 SINE MIR -49 159 87 255 271 85 39 chr12 5627159 5627288 -138655201 + L2 LINE L2 3136 3270 -2 2003 148 10 0 chr12 5627856 5628159 -138654330 + AluJb SINE Alu 1 306 -6 205 326 0 0 chr12 5628199 5628248 -138654241 + L2 LINE L2 3211 3259 -13 662 287 11 0 chr12 5628295 5628469 -138654020 - MER5A DNA MER1_type -1 188 13 947 264 98 46 chr12 5628527 5629008 -138653481 + MLT1J LTR MaLR 3 508 -3 191 310 116 72 chr12 5629084 5629516 -138652973 + L2 LINE L2 2032 2482 -832 2347 118 128 10 chr12 5629866 5630249 -138652240 + MSTA LTR MaLR 1 428 0 230 315 74 62 chr12 5630284 5630446 -138652043 + L2 LINE L2 2919 3082 -190 287 273 58 33 chr12 5633205 5633326 -138649163 + MIR3 SINE MIR 3 126 -82 988 223 19 23 chr12 5633420 5633635 -138648854 - MER20 DNA MER1_type -5 214 1 21 71 0 0 chr12 5633797 5633839 -138648650 + AT_rich Low_complexity Low_complexity 1 42 0 318 358 20 55 chr12 5633885 5634006 -138648483 - L3 LINE CR1 -11 1566 1453 1346 205 78 61 chr12 5634006 5634465 -138648024 - MLT1C LTR MaLR 0 467 1 318 358 20 55 chr12 5634465 5634544 -138647945 - L3 LINE CR1 -124 1453 1373 23 33 0 0 chr12 5634913 5634943 -138647546 + AT_rich Low_complexity Low_complexity 1 30 0 261 0 0 0 chr12 5635010 5635039 -138647450 + (TAG)n Simple_repeat Simple_repeat 1 29 0 315 309 12 30 chr12 5635219 5635387 -138647102 + CT-rich Low_complexity Low_complexity 1 165 0 2837 0 3 0 chr12 5636425 5636728 -138645761 + AluYa5 SINE Alu 1 304 -7 788 219 69 94 chr12 5636800 5637192 -138645297 + MLT1B LTR MaLR 9 390 0 352 349 40 7 chr12 5637267 5637419 -138645070 + MIR SINE MIR 25 181 -81 2168 107 0 25 chr12 5639628 5639945 -138642544 - AluSx SINE Alu -3 309 1 779 296 78 21 chr12 5639973 5640411 -138642078 + L2 LINE L2 2578 3042 -230 343 374 7 7 chr12 5640738 5640877 -138641612 + L2 LINE L2 3134 3272 0 559 291 139 36 chr12 5641092 5641315 -138641174 + MIR SINE MIR 3 248 -14 400 289 122 44 chr12 5641480 5641864 -138640625 + MLT1J LTR MaLR 73 486 -25 336 245 104 43 chr12 5642086 5642249 -138640240 + MIR SINE MIR 57 229 -33 240 111 0 0 chr12 5642781 5642817 -138639672 + (TTCA)n Simple_repeat Simple_repeat 2 37 0 427 306 44 50 chr12 5643199 5643379 -138639110 + MIR3 SINE MIR 20 198 -10 246 293 37 0 chr12 5643789 5643871 -138638618 - MIR SINE MIR -87 175 91 342 67 0 0 chr12 5645533 5645578 -138636911 + (TG)n Simple_repeat Simple_repeat 1 45 0 192 288 15 61 chr12 5645618 5645684 -138636805 - L2 LINE L2 -1 3271 3209 2141 172 5 52 chr12 5646616 5647023 -138635466 - MLT1B LTR MaLR -2 388 1 196 226 32 16 chr12 5647237 5647299 -138635190 - L2 LINE L2 -302 2970 2908 213 300 29 14 chr12 5648139 5648209 -138634280 - L2 LINE L2 -1 3271 3201 197 263 156 50 chr12 5648667 5648833 -138633656 - MIR SINE MIR -35 227 21 463 278 30 30 chr12 5649340 5649509 -138632980 - MIR SINE MIR -8 254 86 * 655 199 96 143 chr12 5649505 5649744 -138632745 - MIR SINE MIR -35 227 9 615 306 73 46 chr12 5650150 5650631 -138631858 - L3 LINE CR1 -519 1058 565 24 53 0 0 chr12 5650862 5650900 -138631589 + AT_rich Low_complexity Low_complexity 1 38 0 368 397 22 6 chr12 5651369 5651548 -138630941 - MIR3 SINE MIR -7 201 20 696 293 59 43 chr12 5651782 5652038 -138630451 - MIR SINE MIR 0 262 3 315 233 159 101 chr12 5652497 5652686 -138629803 - MIR SINE MIR -37 225 26 825 271 23 26 chr12 5653315 5653581 -138628908 - L1ME3A LINE L1 -11 6142 5878 198 191 0 0 chr12 5653587 5653629 -138628860 + (TA)n Simple_repeat Simple_repeat 2 43 0 231 303 90 0 chr12 5653633 5653722 -138628767 + L1MC4 LINE L1 6607 6703 -1339 * 250 211 0 0 chr12 5653680 5653732 -138628757 - L1MC4 LINE L1 -1339 6703 6652 819 183 20 26 chr12 5653742 5653895 -138628594 - FRAM SINE Alu -33 143 1 3766 256 77 43 chr12 5653906 5655585 -138626904 - L1ME3A LINE L1 -264 5889 4269 419 33 250 0 chr12 5655585 5655645 -138626844 + MADE1 DNA Mariner 2 76 -4 3766 256 77 43 chr12 5655645 5655798 -138626691 - L1ME3A LINE L1 -1884 4269 4123 381 43 0 0 chr12 5655798 5655845 -138626644 + (TG)n Simple_repeat Simple_repeat 1 47 0 3766 256 77 43 chr12 5655845 5656732 -138625757 - L1ME3A LINE L1 -2030 4123 3063 764 249 76 22 chr12 5656734 5656919 -138625570 - AluJo SINE Alu -18 294 100 717 301 91 6 chr12 5656921 5657263 -138625226 - L1ME3A LINE L1 -3094 3035 2665 839 180 42 31 chr12 5657269 5657578 -138624911 - MLT1B LTR MaLR 0 428 97 1350 240 110 6 chr12 5657585 5657939 -138624550 - MSTD LTR MaLR -4 392 2 504 186 31 0 chr12 5657940 5658037 -138624452 - MLT1B LTR MaLR -272 102 3 385 312 77 17 chr12 5658064 5658426 -138624063 - L1ME3A LINE L1 -3501 2628 2245 848 288 118 37 chr12 5658518 5659820 -138622669 - L1MEd LINE L1 -4138 2172 715 1151 239 9 44 chr12 5660670 5660988 -138621501 - L1ME2 LINE L1 -124 5974 5668 1665 228 157 47 chr12 5660990 5661128 -138621361 - L1ME2 LINE L1 -2056 4024 3903 351 0 0 0 chr12 5661128 5661167 -138621322 + (TG)n Simple_repeat Simple_repeat 2 40 0 1665 228 157 47 chr12 5661167 5661316 -138621173 - L1ME2 LINE L1 -2177 3903 3772 360 0 0 0 chr12 5661316 5661356 -138621133 + (TA)n Simple_repeat Simple_repeat 2 41 0 1665 228 157 47 chr12 5661356 5661384 -138621105 - L1ME2 LINE L1 -2308 3772 3748 2833 106 0 11 chr12 5661384 5661752 -138620737 + THE1B LTR MaLR 1 364 0 1665 228 157 47 chr12 5661752 5662402 -138620087 - L1ME2 LINE L1 -2332 3748 2903 753 192 8 0 chr12 5662404 5662534 -138619955 - FLAM_C SINE Alu -6 137 7 1390 246 45 14 chr12 5662534 5663025 -138619464 - L1ME2 LINE L1 -3161 2919 2414 430 275 15 65 chr12 5662993 5663193 -138619296 - L1ME2 LINE L1 -5810 260 71 * 1357 178 74 0 chr12 5663258 5663527 -138618962 + AluJb SINE Alu 1 289 -23 21 36 0 0 chr12 5663610 5663638 -138618851 + AT_rich Low_complexity Low_complexity 1 28 0 596 326 82 14 chr12 5663805 5664099 -138618390 - L3 LINE CR1 -13 1564 1251 1719 144 0 61 chr12 5664279 5664592 -138617897 + AluSx SINE Alu 1 294 -18 200 180 0 60 chr12 5664976 5665026 -138617463 + GA-rich Low_complexity Low_complexity 2 48 0 353 322 20 18 chr12 5665074 5665251 -138617238 + MIR3 SINE MIR 4 180 -28 2346 51 0 0 chr12 5665730 5666022 -138616467 + AluY SINE Alu 1 292 -19 424 364 56 0 chr12 5666470 5666632 -138615857 + MER91A DNA MER1_type 1 171 -25 331 227 118 27 chr12 5666759 5666869 -138615620 + MIR SINE MIR 26 145 -63 537 244 42 36 chr12 5666892 5667049 -138615440 + MIR SINE MIR 21 181 -62 452 293 24 37 chr12 5667047 5667211 -138615278 - MIR SINE MIR -77 185 24 * 265 182 0 78 chr12 5667274 5667351 -138615138 + L1MC4 LINE L1 6636 6706 -1336 224 300 0 0 chr12 5667353 5667413 -138615076 + (CATATA)n Simple_repeat Simple_repeat 3 62 0 184 241 3 24 chr12 5667414 5667510 -138614979 + MIR SINE MIR 196 259 -3 210 303 72 10 chr12 5668772 5668872 -138613617 - MIR SINE MIR -68 140 31 435 319 89 0 chr12 5670262 5670419 -138612070 - MIR SINE MIR -22 240 70 184 293 0 0 chr12 5671232 5671273 -138611216 - MIR3 SINE MIR -29 179 139 198 208 0 0 chr12 5672250 5672298 -138610191 + CT-rich Low_complexity Low_complexity 2 49 0 194 73 55 18 chr12 5674516 5674571 -138607918 + (CGCGG)n Simple_repeat Simple_repeat 1 57 0 471 18 0 0 chr12 5675095 5675151 -138607338 + (CA)n Simple_repeat Simple_repeat 2 57 0 306 0 0 0 chr12 5677011 5677045 -138605444 + (TG)n Simple_repeat Simple_repeat 2 35 0 314 319 43 7 chr12 5678928 5679069 -138603420 + MIR SINE MIR 8 153 -109 476 230 66 71 chr12 5681219 5681415 -138601074 + MIR3 SINE MIR 8 202 -6 221 221 301 26 chr12 5681758 5681871 -138600618 - MIR SINE MIR -16 246 103 422 193 73 37 chr12 5683218 5683327 -138599162 + MIR3 SINE MIR 77 189 -19 225 324 106 47 chr12 5683623 5683793 -138598696 + MIR3 SINE MIR 12 191 -17 248 235 244 17 chr12 5684109 5684224 -138598265 + L2 LINE L2 3173 3313 0 183 298 64 43 chr12 5685364 5685458 -138597031 - L2 LINE L2 -40 3273 3178 211 188 16 16 chr12 5686393 5686457 -138596032 + GA-rich Low_complexity Low_complexity 1 64 0 230 284 125 11 chr12 5687210 5687298 -138595191 - L2 LINE L2 -540 2774 2677 221 265 15 0 chr12 5687320 5687388 -138595101 + (TGAA)n Simple_repeat Simple_repeat 3 71 0 420 20 0 0 chr12 5687827 5687876 -138594613 + (TG)n Simple_repeat Simple_repeat 2 50 0 368 204 194 0 chr12 5688174 5688272 -138594217 + MER5B DNA MER1_type 61 177 -1 211 282 64 39 chr12 5688668 5688746 -138593743 - MIR SINE MIR -31 231 152 284 250 201 8 chr12 5690037 5690191 -138592298 + MIR SINE MIR 42 228 -34 291 325 149 30 chr12 5691446 5691714 -138590775 - L2 LINE L2 -3 3269 2970 240 328 90 0 chr12 5693138 5693272 -138589217 - MIR SINE MIR 0 262 117 597 275 15 35 chr12 5693281 5693481 -138589008 + L2 LINE L2 3118 3313 0 283 321 28 46 chr12 5693473 5693582 -138588907 - MIR SINE MIR -153 109 3 * 336 150 17 17 chr12 5693679 5693739 -138588750 + MIR SINE MIR 116 175 -87 346 292 98 76 chr12 5694028 5694212 -138588277 - L1ME4a LINE L1 -2 6119 5940 1498 191 3 31 chr12 5694212 5694531 -138587958 - AluJo SINE Alu -2 310 1 346 292 98 76 chr12 5694531 5694624 -138587865 - L1ME4a LINE L1 -181 5940 5850 2351 68 0 7 chr12 5694624 5694933 -138587556 - AluSc SINE Alu -2 307 1 346 292 98 76 chr12 5694933 5695165 -138587324 - L1ME4a LINE L1 -271 5850 5598 921 265 28 16 chr12 5695458 5695711 -138586778 + MIR SINE MIR 5 260 -2 1914 174 67 59 chr12 5696568 5697029 -138585460 - MLT1C LTR MaLR 0 467 3 344 321 65 27 chr12 5697403 5697587 -138584902 + MIR3 SINE MIR 3 193 -15 459 0 0 0 chr12 5698072 5698123 -138584366 + (CA)n Simple_repeat Simple_repeat 2 52 0 406 222 9 46 chr12 5698732 5698840 -138583649 - MER20B DNA MER1_type -677 106 3 201 39 0 0 chr12 5699143 5699169 -138583320 + (CCCCCA)n Simple_repeat Simple_repeat 2 27 0 557 301 165 54 chr12 5699970 5700528 -138581961 + L2 LINE L2 1988 2607 -707 308 356 22 85 chr12 5700598 5701090 -138581399 + L2 LINE L2 2812 3272 0 246 128 0 0 chr12 5701396 5701435 -138581054 + (CA)n Simple_repeat Simple_repeat 1 39 0 2670 148 26 16 chr12 5702552 5703046 -138579443 - L1MC2 LINE L1 0 6344 5846 418 221 11 21 chr12 5704597 5704692 -138577797 - MER117 DNA MER1_type 0 197 104 443 253 62 14 chr12 5704697 5704843 -138577646 - MER117 DNA MER1_type -43 154 2 442 285 93 89 chr12 5704843 5705089 -138577400 + MIR SINE MIR 8 254 -8 265 211 46 92 chr12 5705165 5705274 -138577215 - L3b LINE CR1 -250 1333 1230 234 359 34 83 chr12 5705848 5706113 -138576376 - L2 LINE L2 -78 3194 2943 477 239 0 0 chr12 5706342 5706430 -138576059 + MIR3 SINE MIR 70 157 -51 182 241 52 35 chr12 5706724 5706782 -138575707 - L2 LINE L2 -1 3271 3213 422 190 13 13 chr12 5706889 5706967 -138575522 + Tigger5 DNA MER2_type 1 78 -2245 285 282 13 0 chr12 5706967 5707045 -138575444 - Tigger5 DNA MER2_type -3 2320 2242 245 180 328 0 chr12 5707035 5707096 -138575393 + Tigger5 DNA MER2_type 2242 2322 -1 * 357 182 149 33 chr12 5707097 5707218 -138575271 - MER5A DNA MER1_type -54 135 1 313 243 9 90 chr12 5707552 5707663 -138574826 - MIR3 SINE MIR -22 186 85 249 253 0 46 chr12 5708053 5708140 -138574349 - MIR SINE MIR -6 256 174 424 268 0 47 chr12 5708480 5708607 -138573882 - MIR3 SINE MIR -83 125 5 2280 91 3 0 chr12 5709489 5709797 -138572692 + AluSg1 SINE Alu 1 309 0 310 286 22 11 chr12 5710164 5710255 -138572234 + MIR SINE MIR 56 147 -61 1787 166 0 0 chr12 5711377 5711679 -138570810 + AluJb SINE Alu 1 302 -10 236 347 29 23 chr12 5913138 5913311 -138369178 + MIR SINE MIR 54 227 -35 228 228 35 0 chr12 5914193 5914250 -138368239 - MIR3 SINE MIR -49 159 101 1295 233 62 48 chr12 5914275 5914773 -138367716 + MLT1D LTR MaLR 1 505 0 189 0 0 0 chr12 5916682 5916703 -138365786 + (TG)n Simple_repeat Simple_repeat 1 21 0 * 219 36 0 0 chr12 5916702 5916730 -138365759 + (GA)n Simple_repeat Simple_repeat 1 28 0 449 305 7 20 chr12 5917143 5917294 -138365195 + MIR SINE MIR 49 197 -65 784 310 89 43 chr12 5917372 5919145 -138363344 - L1MEd LINE L1 -743 5386 3533 21 36 0 0 chr12 5919209 5919237 -138363252 + AT_rich Low_complexity Low_complexity 1 28 0 1294 188 30 4 chr12 5919242 5919476 -138363013 + AluJo SINE Alu 45 284 -28 22 0 0 0 chr12 5919600 5919622 -138362867 + AT_rich Low_complexity Low_complexity 1 22 0 1640 283 32 45 chr12 5919647 5920451 -138362038 - L1MEd LINE L1 -2846 3283 2495 2471 133 3 3 chr12 5920451 5920812 -138361677 - THE1B LTR MaLR -3 361 1 1640 283 32 45 chr12 5920812 5921046 -138361443 - L1MEd LINE L1 -3634 2495 2259 431 257 46 135 chr12 5921277 5921604 -138360885 - L1ME3A LINE L1 -220 5950 5653 1219 157 4 58 chr12 5921697 5921939 -138360550 - MER46A DNA MER2_type -4 232 4 481 231 56 65 chr12 5921960 5922281 -138360208 - L1MEd LINE L1 -5017 1102 785 247 270 18 81 chr12 5922876 5922987 -138359502 + MLT1L LTR MaLR 20 123 -492 562 247 141 38 chr12 5923009 5923272 -138359217 + MLT1L LTR MaLR 322 611 -4 507 301 87 41 chr12 5923457 5923723 -138358766 + MLT1I LTR MaLR 114 391 -18 252 0 0 0 chr12 5924137 5924165 -138358324 + (A)n Simple_repeat Simple_repeat 1 28 0 252 0 0 0 chr12 5924751 5924779 -138357710 + (CA)n Simple_repeat Simple_repeat 2 29 0 1346 247 56 18 chr12 5924829 5925278 -138357211 - Charlie4a DNA MER1_type -17 491 26 264 311 142 0 chr12 5925756 5925904 -138356585 - MIR SINE MIR -6 256 88 202 333 0 0 chr12 5926058 5926121 -138356368 - L3 LINE CR1 -156 1421 1359 476 274 154 48 chr12 5926192 5926549 -138355940 - L2 LINE L2 -4 3309 2915 3111 190 40 49 chr12 5926735 5927214 -138355275 + MER21B LTR ERV1 1 474 -389 2289 122 0 0 chr12 5927214 5927525 -138354964 - AluSq SINE Alu -2 311 1 3111 190 40 49 chr12 5927525 5927719 -138354770 + MER21B LTR ERV1 474 668 -195 461 132 95 3 chr12 5927718 5927807 -138354682 + MER21A LTR ERV1 773 912 0 * 6189 134 12 7 chr12 5927984 5928924 -138353565 + LTR5 LTR ERVK 1 944 -25 1456 270 123 83 chr12 5929000 5930363 -138352126 - L2 LINE L2 -621 2693 1276 332 236 173 0 chr12 5930607 5930717 -138351772 + MIR SINE MIR 63 191 -71 1491 120 87 40 chr12 5930726 5931002 -138351487 + Tigger2a DNA MER2_type 1 289 -145 11417 183 18 8 chr12 5931036 5932766 -138349723 - L1PB2 LINE L1 0 6151 4376 180 0 0 0 chr12 5932766 5932786 -138349703 + (TTTTA)n Simple_repeat Simple_repeat 3 22 0 11417 183 18 8 chr12 5932786 5934409 -138348080 - L1PB2 LINE L1 -1775 4376 2771 7127 119 52 45 chr12 5934410 5936236 -138346253 + L1PB2 LINE L1 1664 3501 -3361 867 191 20 0 chr12 5936239 5936386 -138346103 + Tigger2a DNA MER2_type 294 443 -1 604 259 27 84 chr12 5936629 5936926 -138345563 + MLT1J LTR MaLR 4 283 -228 625 276 33 0 chr12 5937063 5937215 -138345274 + MER115 DNA AcHobo 152 308 -385 304 303 155 13 chr12 5937225 5937380 -138345109 - L2 LINE L2 -252 3061 2885 217 238 0 0 chr12 5939077 5939119 -138343370 + CT-rich Low_complexity Low_complexity 3 44 0 199 373 62 8 chr12 5939595 5939793 -138342696 + MIR SINE MIR 2 212 -50 829 164 14 0 chr12 5940396 5940542 -138341947 - FAM SINE Alu -7 42 1 2601 137 29 14 chr12 5940988 5941405 -138341084 + MSTB LTR MaLR 4 426 0 200 236 258 0 chr12 5942235 5942324 -138340165 - MIR SINE MIR -115 147 36 182 266 71 53 chr12 5942442 5942555 -138339934 + MIR SINE MIR 16 130 -132 6174 97 17 2 chr12 5943031 5943996 -138338493 + L1PB1 LINE L1 5137 6113 -38 218 176 0 0 chr12 5943996 5944030 -138338459 + polypurine Low_complexity Low_complexity 2 35 0 839 89 11 56 chr12 5944031 5944211 -138338278 + (GAAA)n Simple_repeat Simple_repeat 1 172 0 283 267 13 0 chr12 5944769 5944844 -138337645 + MIR SINE MIR 78 153 -109 1506 193 102 55 chr12 5944948 5945436 -138337053 + MER69 DNA AcHobo 2013 2523 -3 1971 119 29 10 chr12 5946333 5946643 -138335846 - L1PB1 LINE L1 -17 6134 5819 2480 60 0 13 chr12 5946643 5946945 -138335544 - AluY SINE Alu -13 298 1 1029 92 0 7 chr12 5946945 5947087 -138335402 - L1PB1 LINE L1 -544 5607 5467 388 319 63 49 chr12 5947836 5948203 -138334286 + HAL1b LINE L1 219 590 -758 983 230 84 16 chr12 5948212 5948548 -138333941 - LTR16A LTR ERVL 0 457 81 1347 160 29 19 chr12 5948826 5949129 -138333360 - MER61C LTR ERV1 -30 404 1 257 288 0 25 chr12 5949713 5949831 -138332658 + L1ME4a LINE L1 6007 6121 0 2035 170 67 22 chr12 5950317 5950723 -138331766 + MER21B LTR ERV1 1 424 -439 368 232 43 70 chr12 5950724 5950909 -138331580 + L2 LINE L2 3112 3291 -22 2488 45 7 32 chr12 5950914 5951223 -138331266 - AluY SINE Alu -10 301 1 3036 127 2 7 chr12 5951319 5951782 -138330707 + MER4C LTR ERV1 3 463 -2 2399 85 3 0 chr12 5952352 5952645 -138329844 + AluSp SINE Alu 1 294 -19 295 216 27 27 chr12 5953103 5953177 -138329312 - MER117 DNA MER1_type -119 78 5 642 238 101 11 chr12 5953238 5953427 -138329062 + L2 LINE L2 3089 3294 -19 1008 66 0 0 chr12 5953427 5953564 -138328925 + (GGAGA)n Simple_repeat Simple_repeat 5 141 0 21 0 0 0 chr12 5953614 5953635 -138328854 + AT_rich Low_complexity Low_complexity 1 21 0 526 308 45 0 chr12 5954568 5954789 -138327700 + MIR SINE MIR 29 259 -3 347 304 70 18 chr12 5957622 5957793 -138324696 - MIR SINE MIR -72 190 11 182 150 25 0 chr12 5957930 5957970 -138324519 + GA-rich Low_complexity Low_complexity 5 45 0 206 231 0 0 chr12 5958413 5958452 -138324037 + (CA)n Simple_repeat Simple_repeat 1 39 0 240 267 58 42 chr12 5958452 5958572 -138323917 - L3b LINE CR1 -184 1399 1278 667 198 81 137 chr12 5958926 5959078 -138323411 + MER112 DNA MER1_type 23 157 -103 2028 62 11 19 chr12 5959078 5959338 -138323151 - AluY SINE Alu -9 302 45 667 198 81 137 chr12 5959338 5959433 -138323056 + MER112 DNA MER1_type 157 256 -4 330 277 106 8 chr12 5959746 5959927 -138322562 + MIR SINE MIR 62 262 0 182 288 38 25 chr12 5960504 5960584 -138321905 + MIR SINE MIR 63 143 -65 261 244 12 24 chr12 5961412 5961494 -138320995 - MIR3 SINE MIR -29 179 99 218 32 32 0 chr12 5962631 5962662 -138319827 + (TC)n Simple_repeat Simple_repeat 2 33 0 241 236 197 8 chr12 5963493 5963620 -138318869 + L2 LINE L2 3159 3309 -4 2011 171 32 6 chr12 5966357 5966696 -138315793 - MER7A DNA MER2_type 0 346 1 315 288 48 16 chr12 5967833 5967958 -138314531 - MIR SINE MIR -34 228 100 1078 213 4 30 chr12 5969768 5969998 -138312491 - MER58A DNA MER1_type 0 224 1 321 280 119 42 chr12 5970473 5970709 -138311780 + L2 LINE L2 2606 2859 -455 399 233 11 116 chr12 5971073 5971262 -138311227 + MIR SINE MIR 93 261 -1 401 311 102 0 chr12 5971361 5971528 -138310961 + MIR3 SINE MIR 25 208 0 316 368 42 58 chr12 5973684 5974062 -138308427 + L2 LINE L2 2897 3268 -4 2649 49 0 0 chr12 5974313 5974617 -138307872 + AluY SINE Alu 1 304 -7 283 338 49 21 chr12 5975821 5975963 -138306526 - L2 LINE L2 0 3272 3127 223 286 170 20 chr12 5977542 5977689 -138304800 - L3 LINE CR1 -6 1571 1403 254 294 109 50 chr12 5978065 5978184 -138304305 - L2 LINE L2 -1 3271 3146 228 275 43 14 chr12 5979373 5979442 -138303047 + MIR SINE MIR 52 122 -86 269 275 30 46 chr12 5979769 5979900 -138302589 - MIR3 SINE MIR -45 163 35 310 273 13 0 chr12 5980240 5980317 -138302172 + GA-rich Low_complexity Low_complexity 1 78 0 1582 67 91 0 chr12 5981051 5981260 -138301229 - MER30 DNA MER1_type 0 230 3 1526 242 116 21 chr12 5981750 5981842 -138300647 - LTR48B LTR ERV1 0 644 562 2157 83 35 3 chr12 5981842 5982131 -138300358 + AluSq SINE Alu 1 298 -15 1526 242 116 21 chr12 5982131 5982554 -138299935 - LTR48B LTR ERV1 -82 562 80 332 216 41 41 chr12 5982600 5982697 -138299792 - MER34 LTR ERV1 -445 97 1 225 227 91 23 chr12 5982697 5982785 -138299704 + L2 LINE L2 3133 3226 -46 189 318 84 9 chr12 5983138 5983245 -138299244 - L2 LINE L2 -3 3310 3196 229 325 53 30 chr12 5983519 5983688 -138298801 - L2 LINE L2 -565 2749 2577 420 287 43 37 chr12 5984626 5984790 -138297699 - MIR SINE MIR -50 212 48 184 129 0 0 chr12 5985202 5985233 -138297256 + L2 LINE L2 3238 3268 -4 1792 177 0 6 chr12 5985491 5985802 -138296687 + AluJb SINE Alu 1 309 -3 201 312 26 13 chr12 5985887 5985964 -138296525 - L3 LINE CR1 -14 1563 1486 1771 174 24 10 chr12 5986134 5986304 -138296185 - AluJo SINE Alu -10 302 125 240 35 0 0 chr12 5986304 5986333 -138296156 + (TTTTC)n Simple_repeat Simple_repeat 2 30 0 1771 174 24 10 chr12 5986333 5986460 -138296029 - AluJo SINE Alu -187 125 1 249 274 55 14 chr12 5986462 5986535 -138295954 - L2 LINE L2 -26 3246 3171 336 306 100 12 chr12 5986877 5987047 -138295442 + L1ME LINE L1 5512 5696 -425 551 134 0 0 chr12 5987050 5987132 -138295357 + AluJ/FLAM SINE Alu 21 102 -210 485 249 83 83 chr12 5987804 5988009 -138294480 - MIR SINE MIR -38 224 20 3013 107 30 0 chr12 5988034 5988474 -138294015 - L1PA13 LINE L1 0 6163 5711 2011 143 7 0 chr12 5989296 5989590 -138292899 - AluSx SINE Alu -13 299 4 181 319 208 0 chr12 5990110 5990254 -138292235 - MIR3 SINE MIR -29 179 6 1328 202 90 42 chr12 5991026 5991383 -138291106 + MLT1A2 LTR MaLR 1 374 0 327 276 39 24 chr12 5991405 5991532 -138290957 + MIR SINE MIR 134 262 0 391 78 0 31 chr12 5991611 5991675 -138290814 + MADE1 DNA Mariner 19 80 0 184 291 79 63 chr12 5991699 5991826 -138290663 - L3 LINE CR1 -3 1574 1446 407 339 58 5 chr12 5991959 5992183 -138290306 + MIR SINE MIR 5 240 -22 460 307 126 53 chr12 5992611 5993041 -138289448 + HAL1 LINE L1 4 464 -2043 1996 259 75 37 chr12 5993055 5993194 -138289295 + HAL1 LINE L1 1074 1206 -1301 1785 172 0 14 chr12 5993194 5993491 -138288998 - AluJb SINE Alu -19 293 1 1996 259 75 37 chr12 5993491 5994193 -138288296 + HAL1 LINE L1 1206 1947 -560 2526 68 0 0 chr12 5994601 5994908 -138287581 + AluY SINE Alu 1 307 -4 554 343 82 8 chr12 5994974 5995214 -138287275 - L2 LINE L2 -695 2619 2341 210 37 0 0 chr12 5995214 5995241 -138287248 + (GGA)n Simple_repeat Simple_repeat 2 28 0 554 343 82 8 chr12 5995241 5995367 -138287122 - L2 LINE L2 -973 2341 2226 21 0 0 0 chr12 5995675 5995696 -138286793 + AT_rich Low_complexity Low_complexity 1 21 0 718 277 100 31 chr12 5997236 5997626 -138284863 - MER113 DNA MER1_type? -104 417 1 212 314 0 0 chr12 5997693 5997744 -138284745 + (CA)n Simple_repeat Simple_repeat 2 52 0 250 304 126 33 chr12 5997869 5998083 -138284406 + MARNA DNA Mariner 175 408 -178 280 222 48 0 chr12 5998397 5998460 -138284029 - MIR SINE MIR -158 104 39 3645 126 8 4 chr12 5998465 5998990 -138283499 + MER1A DNA MER1_type 1 527 0 236 279 58 19 chr12 5999468 5999572 -138282917 - MIR3 SINE MIR -11 197 90 483 156 31 4 chr12 6000804 6001042 -138281447 + (TA)n Simple_repeat Simple_repeat 1 244 0 621 203 6 0 chr12 6001055 6001405 -138281084 + (TA)n Simple_repeat Simple_repeat 1 352 0 417 170 29 6 chr12 6001416 6001587 -138280902 + (TA)n Simple_repeat Simple_repeat 1 175 0 236 176 0 39 chr12 6001622 6001673 -138280816 + LTR66 LTR ERVL 391 439 -171 375 23 0 0 chr12 6001754 6001798 -138280691 + (CA)n Simple_repeat Simple_repeat 1 44 0 2154 112 7 3 chr12 6001910 6002206 -138280283 - AluSg SINE Alu -13 297 1 376 269 59 59 chr12 6002414 6002600 -138279889 + LTR67 LTR ERVL 363 548 -9 255 220 100 60 chr12 6003307 6003407 -138279082 + MIR SINE MIR 18 121 -141 219 69 0 0 chr12 6004152 6004181 -138278308 + (TG)n Simple_repeat Simple_repeat 1 29 0 1053 260 136 68 chr12 6005152 6005798 -138276691 + MER21B LTR ERV1 24 713 -150 1521 211 40 3 chr12 6007093 6007443 -138275046 - MLT1A1 LTR MaLR -2 363 1 347 291 36 0 chr12 6007786 6007951 -138274538 + (CACAC)n Simple_repeat Simple_repeat 5 175 0 345 319 34 15 chr12 6008000 6008526 -138273963 + (CACAC)n Simple_repeat Simple_repeat 1 535 0 724 301 99 17 chr12 6008879 6009224 -138273265 - LTR16C LTR ERVL -30 461 89 464 272 50 28 chr12 6009358 6009538 -138272951 - MIR SINE MIR -65 197 14 229 169 138 15 chr12 6010391 6010414 -138272075 - REP3 LTR ERV -359 203 173 411 240 208 42 chr12 6010414 6010606 -138271883 + MLT1J2 LTR MaLR 4 227 -223 201 74 0 0 chr12 6012213 6012240 -138270249 + (TGAA)n Simple_repeat Simple_repeat 1 27 0 240 228 0 0 chr12 6012744 6012801 -138269688 + GA-rich Low_complexity Low_complexity 2 58 0 1844 155 30 0 chr12 6013628 6013931 -138268558 + AluSx SINE Alu 1 312 0 309 109 0 0 chr12 6015182 6015237 -138267252 + (CAGA)n Simple_repeat Simple_repeat 2 56 0 199 222 22 0 chr12 6015276 6015321 -138267168 - MIR SINE MIR -16 246 201 578 302 105 70 chr12 6015561 6016498 -138265991 - L2 LINE L2 -6 3307 2335 255 270 250 0 chr12 6016765 6016865 -138265624 + MIR SINE MIR 19 143 -65 1538 174 0 24 chr12 6018748 6019036 -138263453 + AluJo SINE Alu 1 281 -31 702 246 23 17 chr12 6019425 6019600 -138262889 + MIR SINE MIR 63 238 -24 236 247 0 25 chr12 6019607 6019688 -138262801 + (CGTG)n Simple_repeat Simple_repeat 1 79 0 263 320 191 0 chr12 6019733 6019880 -138262609 + MIR SINE MIR 71 245 -17 256 271 93 86 chr12 6021632 6021772 -138260717 - L2 LINE L2 -7 3265 3125 513 267 103 44 chr12 6021822 6022095 -138260394 + MLT1I LTR MaLR 114 402 -7 546 312 158 6 chr12 6022198 6022528 -138259961 + L2 LINE L2 2929 3308 -5 189 256 23 0 chr12 6023623 6023666 -138258823 + L2 LINE L2 3266 3309 -4 348 253 44 11 chr12 6025815 6025906 -138256583 + L3 LINE CR1 1419 1512 -65 270 0 0 0 chr12 6026537 6026567 -138255922 + (CA)n Simple_repeat Simple_repeat 1 30 0 414 57 0 0 chr12 6027543 6027596 -138254893 + (CA)n Simple_repeat Simple_repeat 2 54 0 262 260 14 14 chr12 6027597 6027670 -138254819 + G-rich Low_complexity Low_complexity 1 73 0 255 61 0 0 chr12 6028277 6028310 -138254179 + (TG)n Simple_repeat Simple_repeat 2 34 0 410 175 48 16 chr12 6028475 6028576 -138253913 + MER5A DNA MER1_type 4 109 -80 254 322 43 26 chr12 6028795 6028910 -138253579 - MIR3 SINE MIR -7 201 85 281 294 46 37 chr12 6028969 6029078 -138253411 - MIR3 SINE MIR -39 169 60 2345 88 0 0 chr12 6029165 6029472 -138253017 - AluY SINE Alu -4 307 1 649 272 160 19 chr12 6030265 6030826 -138251663 - L2 LINE L2 0 3313 2605 7189 52 6 2 chr12 6031361 6032324 -138250165 + L1PA6 LINE L1 5187 6152 -2 359 255 0 11 chr12 6032423 6032517 -138249972 + MER94 DNA DNA 8 100 -34 195 100 0 0 chr12 6032926 6032956 -138249533 + (ATG)n Simple_repeat Simple_repeat 3 32 0 2185 226 181 25 chr12 6032993 6033947 -138248542 + L2 LINE L2 1933 3070 -243 225 0 0 0 chr12 6034001 6034026 -138248463 + (CA)n Simple_repeat Simple_repeat 2 26 0 1748 264 70 27 chr12 6034288 6035346 -138247143 - L1ME3A LINE L1 -315 5838 4722 350 299 84 13 chr12 6035407 6035561 -138246928 - L1ME3A LINE L1 -4373 1937 1773 782 308 61 17 chr12 6035573 6036222 -138246267 - L1ME3A LINE L1 -4585 1725 957 848 103 0 0 chr12 6036223 6036339 -138246150 + AluSg/x SINE Alu 178 293 -17 234 62 0 0 chr12 6036352 6036384 -138246105 + (TG)n Simple_repeat Simple_repeat 2 33 0 214 235 12 24 chr12 6036384 6036469 -138246020 + (TA)n Simple_repeat Simple_repeat 2 85 0 249 304 141 44 chr12 6036572 6036842 -138245647 - L1ME3A LINE L1 -5307 812 517 419 345 55 63 chr12 6036983 6037363 -138245126 - L1ME3A LINE L1 -5739 380 4 438 254 116 7 chr12 6037383 6037521 -138244968 + L2 LINE L2 3160 3312 -1 250 226 151 21 chr12 6037680 6037773 -138244716 + MIR3 SINE MIR 87 191 -17 346 328 9 26 chr12 6038980 6039096 -138243393 + MIR SINE MIR 50 163 -99 243 284 125 97 chr12 6039544 6039720 -138242769 + MIR SINE MIR 62 242 -20 221 360 88 8 chr12 6039925 6040050 -138242439 - L2 LINE L2 -5 3267 3133 1751 120 11 35 chr12 6040562 6040714 -138241775 - AluSc SINE Alu -32 277 134 285 98 0 0 chr12 6040714 6040755 -138241734 + (TG)n Simple_repeat Simple_repeat 2 42 0 1751 120 11 35 chr12 6040755 6040886 -138241603 - AluSc SINE Alu -175 134 1 252 292 67 8 chr12 6041043 6041163 -138241326 - L2 LINE L2 -7 3265 3139 351 297 93 17 chr12 6041654 6041772 -138240717 + MIR SINE MIR 18 144 -64 237 267 46 61 chr12 6041889 6042020 -138240469 + MIR SINE MIR 109 237 -25 1046 168 0 5 chr12 6042346 6042531 -138239958 - FRAM SINE Alu 0 176 1 3102 214 17 12 chr12 6042532 6043186 -138239303 - L1ME1 LINE L1 -8 6158 5502 2769 143 49 92 chr12 6043196 6043803 -138238686 - L1MC3 LINE L1 -7 7778 7198 393 177 57 12 chr12 6043803 6043898 -138238591 - MLT1F1 LTR MaLR -442 125 35 298 292 88 40 chr12 6044310 6044536 -138237953 + MIR SINE MIR 26 262 0 393 375 73 30 chr12 6044542 6044870 -138237619 - L2 LINE L2 -5 3267 2926 196 344 57 13 chr12 6045054 6045211 -138237278 - MIR3 SINE MIR -5 203 40 337 340 111 34 chr12 6045873 6046261 -138236228 + L2 LINE L2 1182 1599 -1715 794 185 12 56 chr12 6046278 6046440 -138236049 - MER5A DNA MER1_type -5 184 30 455 313 82 10 chr12 6046528 6046723 -138235766 - MIR SINE MIR 0 262 54 297 326 73 22 chr12 6046894 6047072 -138235417 - L2 LINE L2 -1354 1960 1774 565 292 97 38 chr12 6047124 6047412 -138235077 + L2 LINE L2 2196 2500 -814 221 292 212 26 chr12 6047545 6047658 -138234831 + L2 LINE L2 3136 3269 -3 324 125 0 62 chr12 6048431 6048495 -138233994 - Alu SINE Alu 0 302 243 810 275 12 33 chr12 6049068 6049312 -138233177 + MIR SINE MIR 23 261 -1 552 175 19 0 chr12 6049312 6049472 -138233017 + (CAT)n Simple_repeat Simple_repeat 1 163 0 859 154 0 17 chr12 6049514 6049868 -138232621 + (CAT)n Simple_repeat Simple_repeat 1 347 0 187 300 67 56 chr12 6050886 6050976 -138231513 + MIR3 SINE MIR 69 159 -49 376 94 0 19 chr12 6051002 6051055 -138231434 + Tigger5 DNA MER2_type 1 52 -2271 422 207 12 0 chr12 6051070 6051152 -138231337 + Tigger5 DNA MER2_type 2239 2321 -2 463 356 62 6 chr12 6051224 6051625 -138230864 + L2 LINE L2 2762 3219 -94 229 287 161 35 chr12 6052168 6052342 -138230147 - L3b LINE CR1 -208 1375 1180 375 233 63 63 chr12 6052597 6052756 -138229733 - MER5A DNA MER1_type 0 189 31 204 385 28 18 chr12 6053720 6053829 -138228660 + L3b LINE CR1 1275 1384 -199 206 313 30 0 chr12 6055019 6055086 -138227403 + (CATG)n Simple_repeat Simple_repeat 2 70 0 807 183 0 0 chr12 6055167 6055347 -138227142 + (TCCA)n Simple_repeat Simple_repeat 1 180 0 597 286 25 37 chr12 6055361 6055602 -138226887 - MIR SINE MIR -12 250 13 189 0 0 0 chr12 6056648 6056669 -138225820 + (CCCCCA)n Simple_repeat Simple_repeat 4 24 0 1713 248 82 19 chr12 6057717 6058181 -138224308 + MER77 LTR ERV1 77 569 -36 8567 137 16 1 chr12 6058486 6060624 -138221865 - L1PA10 LINE L1 -9 6159 4002 284 307 58 14 chr12 6061020 6061159 -138221330 + MIR SINE MIR 17 159 -69 275 254 0 0 chr12 6061216 6061271 -138221218 - L2 LINE L2 -8 3264 3210 198 180 0 66 chr12 6061354 6061415 -138221074 + L3 LINE CR1 698 754 -823 338 274 53 79 chr12 6061440 6061468 -138221021 - MIR SINE MIR -44 218 191 1526 181 10 36 chr12 6061468 6061777 -138220712 - AluJo SINE Alu -11 301 1 338 274 53 79 chr12 6061777 6061938 -138220551 - MIR SINE MIR -71 191 34 192 40 0 0 chr12 6062452 6062477 -138220012 + (TG)n Simple_repeat Simple_repeat 1 25 0 267 215 0 0 chr12 6063518 6063583 -138218906 + (TG)n Simple_repeat Simple_repeat 1 65 0 308 321 36 14 chr12 6063673 6063813 -138218676 + L3 LINE CR1 235 377 -1200 387 247 113 57 chr12 6063868 6064115 -138218374 - L1MC4a LINE L1 -1642 6166 5906 203 250 125 0 chr12 6064126 6064190 -138218299 + L3 LINE CR1 439 510 -1067 225 140 0 123 chr12 6064507 6064564 -138217925 + L2 LINE L2 3262 3311 -2 513 287 160 0 chr12 6065641 6065829 -138216660 + MIR SINE MIR 42 259 -3 244 229 186 0 chr12 6065944 6066014 -138216475 + L2 LINE L2 3190 3272 -41 222 118 0 0 chr12 6066031 6066065 -138216424 + (TGAA)n Simple_repeat Simple_repeat 1 34 0 334 240 140 0 chr12 6066622 6066722 -138215767 + MIR SINE MIR 33 146 -62 292 266 180 47 chr12 6067353 6067586 -138214903 + L1ME4a LINE L1 5856 6119 -2 2109 138 0 0 chr12 6067709 6068020 -138214469 + AluSx SINE Alu 1 311 -1 1500 325 168 21 chr12 6069549 6070044 -138212445 + L3 LINE CR1 506 927 -650 6571 89 9 3 chr12 6070044 6071253 -138211236 + L1PA11 LINE L1 4961 6174 0 1500 325 168 21 chr12 6071253 6071686 -138210803 + L3 LINE CR1 927 1570 -7 299 273 47 47 chr12 6072163 6072291 -138210198 + MIR3 SINE MIR 78 205 -3 384 97 0 0 chr12 6073251 6073313 -138209176 + (TC)n Simple_repeat Simple_repeat 1 62 0 283 306 153 0 chr12 6075242 6075353 -138207136 - L2 LINE L2 -8 3264 3137 391 274 174 28 chr12 6075770 6075982 -138206507 + MIR SINE MIR 7 249 -13 1595 169 36 10 chr12 6076440 6076742 -138205747 + AluJb SINE Alu 1 310 -2 230 247 195 0 chr12 6077329 6077406 -138205083 - L2 LINE L2 -14 3299 3208 317 360 95 16 chr12 6078246 6078488 -138204001 + L3b LINE CR1 1262 1522 -61 284 301 27 70 chr12 6078656 6078842 -138203647 - MIR SINE MIR -57 205 28 180 0 0 0 chr12 6079748 6079768 -138202721 + (T)n Simple_repeat Simple_repeat 1 20 0 259 224 0 0 chr12 6080735 6080784 -138201705 + L2 LINE L2 3251 3299 -14 1058 289 109 63 chr12 6081833 6081985 -138200504 - L2 LINE L2 -6 3307 3163 2358 94 0 0 chr12 6081985 6082294 -138200195 + AluSg SINE Alu 1 309 -1 1058 289 109 63 chr12 6082294 6082559 -138199930 - L2 LINE L2 -150 3163 2912 1838 137 14 7 chr12 6082559 6082851 -138199638 + AluSx SINE Alu 1 294 -18 1058 289 109 63 chr12 6082851 6083255 -138199234 - L2 LINE L2 -401 2912 2440 2167 285 123 9 chr12 6083842 6085042 -138197447 + L2 LINE L2 1950 3296 -17 318 26 0 0 chr12 6085183 6085222 -138197267 + (GA)n Simple_repeat Simple_repeat 2 40 0 203 257 29 0 chr12 6085229 6085299 -138197190 + GA-rich Low_complexity Low_complexity 2 73 0 373 267 125 8 chr12 6085449 6085569 -138196920 + MIR3 SINE MIR 40 173 -35 243 0 0 0 chr12 6085672 6085699 -138196790 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 707 279 59 28 chr12 6085727 6085972 -138196517 + MIR SINE MIR 3 251 -11 575 271 30 96 chr12 6086191 6086494 -138195995 + L1M4 LINE L1 2610 2892 -3254 2042 123 0 0 chr12 6086496 6086789 -138195700 + AluSx SINE Alu 1 293 -19 409 183 0 0 chr12 6086847 6086918 -138195571 + L2 LINE L2 3207 3277 -36 1273 311 75 23 chr12 6087004 6088089 -138194400 + L1M4 LINE L1 3047 4187 -1959 2167 110 3 0 chr12 6088089 6088398 -138194091 + AluY SINE Alu 1 310 -1 25719 72 6 0 chr12 6088410 6091695 -138190794 + L1P LINE L1 5 3307 -2839 228 208 21 0 chr12 6091695 6091743 -138190746 - Alu SINE Alu -221 82 34 194 310 80 18 chr12 6091849 6091962 -138190527 + L2 LINE L2 2133 2252 -1062 434 96 108 12 chr12 6092025 6092108 -138190381 - Alu SINE Alu -6 304 214 223 393 74 0 chr12 6092687 6092822 -138189667 + L2 LINE L2 2920 3064 -208 27 0 0 0 chr12 6092956 6092983 -138189506 + AT_rich Low_complexity Low_complexity 1 27 0 352 317 42 0 chr12 6093089 6093231 -138189258 + L1ME3A LINE L1 2539 2686 -3460 507 218 174 3 chr12 6093290 6093520 -138188969 + L1P4 LINE L1 5171 5431 -735 293 303 57 14 chr12 6093537 6093748 -138188741 + L1ME3A LINE L1 4942 5161 -985 * 787 305 79 16 chr12 6093735 6094230 -138188259 + L1ME3A LINE L1 5425 5950 -220 1822 129 6 39 chr12 6094472 6094783 -138187706 - AluJo SINE Alu -10 302 2 206 274 9 151 chr12 6094858 6094964 -138187525 - L3 LINE CR1 -59 1518 1428 292 276 71 39 chr12 6095463 6095590 -138186899 - L3 LINE CR1 -143 1434 1304 285 29 0 0 chr12 6095626 6095660 -138186829 + (TG)n Simple_repeat Simple_repeat 2 35 0 180 186 29 43 chr12 6096216 6096286 -138186203 + GA-rich Low_complexity Low_complexity 5 73 0 1548 248 46 37 chr12 6097137 6097732 -138184757 + L2 LINE L2 2704 3300 -13 267 316 0 11 chr12 6097740 6097835 -138184654 - MIR SINE MIR -102 160 67 262 299 46 11 chr12 6097853 6097940 -138184549 + MIR SINE MIR 32 121 -87 1859 142 75 33 chr12 6097961 6098321 -138184168 + THE1C LTR MaLR 1 375 0 875 298 182 26 chr12 6098820 6099391 -138183098 + L2 LINE L2 2185 2844 -470 617 278 139 22 chr12 6099478 6099701 -138182788 + MIR SINE MIR 6 254 -8 626 288 77 77 chr12 6099712 6100011 -138182478 + L2 LINE L2 2970 3268 -4 560 289 66 53 chr12 6100125 6100353 -138182136 + MLT1J LTR MaLR 6 236 -275 2328 170 31 24 chr12 6101763 6101817 -138180672 + MSTB LTR MaLR 1 53 -373 2480 37 10 0 chr12 6101817 6102112 -138180377 + AluY SINE Alu 1 298 -13 2328 170 31 24 chr12 6102112 6102480 -138180009 + MSTB LTR MaLR 53 426 0 1406 226 133 38 chr12 6103164 6103607 -138178882 + MLT1D LTR MaLR 21 505 0 632 310 99 48 chr12 6103618 6104229 -138178260 - L2 LINE L2 -201 3071 2430 272 198 0 37 chr12 6105552 6105633 -138176856 + CT-rich Low_complexity Low_complexity 5 82 0 328 389 7 0 chr12 6106853 6106997 -138175492 + L1ME4a LINE L1 5779 5923 -198 236 294 56 16 chr12 6107004 6107130 -138175359 + L1ME4a LINE L1 5991 6121 0 736 277 121 51 chr12 6109609 6110039 -138172450 + LTR33A LTR ERVL 64 523 0 1254 241 60 52 chr12 6110114 6110232 -138172257 + LTR16C LTR ERVL 67 183 -308 180 97 0 0 chr12 6110232 6110263 -138172226 + (CA)n Simple_repeat Simple_repeat 2 32 0 1254 241 60 52 chr12 6110263 6110320 -138172169 + LTR16C LTR ERVL 183 238 -253 1541 227 13 37 chr12 6110320 6110694 -138171795 + MLT1A1 LTR MaLR 1 365 0 1254 241 60 52 chr12 6110694 6110936 -138171553 + LTR16C LTR ERVL 238 488 -3 1834 135 0 13 chr12 6112437 6112741 -138169748 - AluJo SINE Alu -8 304 5 351 68 0 0 chr12 6112700 6112744 -138169745 - Alu SINE Alu -256 45 2 2278 216 61 22 chr12 6112766 6113162 -138169327 - MER119 DNA MER1_type -5 578 152 2490 62 7 3 chr12 6113162 6113469 -138169020 + AluY SINE Alu 1 308 -3 2278 216 61 22 chr12 6113469 6113627 -138168862 - MER119 DNA MER1_type -431 152 2 186 43 0 0 chr12 6113887 6113910 -138168579 + (CAA)n Simple_repeat Simple_repeat 2 24 0 278 175 12 0 chr12 6116035 6116115 -138166374 + (CA)n Simple_repeat Simple_repeat 1 81 0 837 266 192 16 chr12 6116394 6116826 -138165663 + LTR33A LTR ERVL 8 515 -8 585 221 207 9 chr12 6117425 6117638 -138164851 + MIR SINE MIR 8 262 0 2405 146 53 27 chr12 6118002 6118413 -138164076 + MSTA LTR MaLR 1 422 -6 399 198 0 99 chr12 6118471 6118572 -138163917 + L1MB8 LINE L1 4018 4108 -2038 1325 83 0 0 chr12 6118573 6118741 -138163748 - AluY SINE Alu -10 301 134 2475 73 0 0 chr12 6118742 6119043 -138163446 - AluY SINE Alu -10 301 1 5196 180 50 39 chr12 6119043 6121034 -138161455 + L1MB8 LINE L1 4099 6110 -68 332 151 21 54 chr12 6121114 6121207 -138161282 + L1MB8 LINE L1 6089 6178 0 352 309 9 9 chr12 6121245 6121355 -138161134 + MIR SINE MIR 16 125 -83 670 255 121 35 chr12 6122888 6123119 -138159370 + MIR SINE MIR 4 254 -8 345 267 84 0 chr12 6125055 6125186 -138157303 - MER103 DNA DNA -2 164 23 2331 106 0 6 chr12 6125576 6125887 -138156602 - AluSx SINE Alu -3 309 1 679 308 145 23 chr12 6126348 6126783 -138155706 - L2 LINE L2 -9 3304 2817 306 0 0 0 chr12 6130534 6130568 -138151921 + (CA)n Simple_repeat Simple_repeat 2 35 0 283 400 7 0 chr12 6130759 6130909 -138151580 + L2 LINE L2 2554 2704 -610 311 305 93 68 chr12 6131382 6131661 -138150828 - L2 LINE L2 -23 3249 2964 558 244 58 6 chr12 6132618 6132774 -138149715 - MIR SINE MIR -19 243 80 214 255 75 47 chr12 6132801 6132907 -138149582 - MIR SINE MIR -143 119 11 270 56 0 0 chr12 6134410 6134446 -138148043 + (TG)n Simple_repeat Simple_repeat 2 37 0 261 292 45 0 chr12 6134645 6134734 -138147755 + MIR SINE MIR 26 118 -90 611 220 31 31 chr12 6137994 6138153 -138144336 + L1MD2 LINE L1 6199 6357 -2 427 232 33 132 chr12 6138529 6138801 -138143688 + MER112 DNA MER1_type 8 252 -8 267 322 0 0 chr12 6138880 6138970 -138143519 + (TG)n Simple_repeat Simple_repeat 1 90 0 195 239 0 0 chr12 6138995 6139062 -138143427 + (TG)n Simple_repeat Simple_repeat 1 67 0 378 327 16 60 chr12 6139409 6139660 -138142829 + MIR SINE MIR 20 259 -3 201 178 22 22 chr12 6139763 6139808 -138142681 + CT-rich Low_complexity Low_complexity 2 46 0 186 71 0 0 chr12 6139808 6139836 -138142653 + (A)n Simple_repeat Simple_repeat 1 28 0 334 215 0 0 chr12 6140492 6140557 -138141932 + MLT1K LTR MaLR 511 575 -13 323 283 243 0 chr12 6140688 6140840 -138141649 - MIR SINE MIR -6 256 68 1772 150 7 29 chr12 6140856 6141162 -138141327 - AluJo SINE Alu -3 309 11 399 182 34 0 chr12 6142384 6142472 -138140017 + L1ME4a LINE L1 5965 6055 -66 * 5416 164 29 41 chr12 6142467 6143902 -138138587 - L1MA10 LINE L1 -2 6220 4788 297 167 0 6 chr12 6143902 6143960 -138138529 - L1MA10 LINE L1 -1579 4455 4400 1142 89 0 13 chr12 6143963 6144120 -138138369 - MER4C LTR ERV1 0 465 311 2482 77 28 25 chr12 6144120 6144473 -138138016 - MER4C LTR ERV1 -111 354 1 5980 229 61 48 chr12 6144473 6146290 -138136199 - L1MA10 LINE L1 -1636 4398 2606 3454 45 0 0 chr12 6146290 6146742 -138135747 - L1PA5 LINE L1 0 6154 5756 5980 229 61 48 chr12 6146742 6148175 -138134314 - L1MA10 LINE L1 -3428 2606 3 3413 250 116 52 chr12 6148535 6149916 -138132573 + L1ME3A LINE L1 18 1486 -4937 1285 269 35 59 chr12 6149917 6150358 -138132131 + L1ME3A LINE L1 1875 2292 -4830 2394 143 0 15 chr12 6150358 6150700 -138131789 + MER1B DNA MER1_type 1 337 0 1285 269 35 59 chr12 6150700 6151000 -138131489 + L1ME3A LINE L1 2292 2598 -4524 424 262 6 38 chr12 6151380 6151563 -138130926 + MER31-int LTR ERV1 973 1149 -5182 180 0 0 0 chr12 6151996 6152016 -138130473 + (A)n Simple_repeat Simple_repeat 1 20 0 347 196 14 98 chr12 6152193 6152336 -138130153 + LTR57-int LTR ERVL 622 752 -4591 * 917 209 42 58 chr12 6152278 6152818 -138129671 + MER31-int LTR ERV1 834 2028 -2843 * 923 232 21 64 chr12 6152711 6152991 -138129498 + LTR57-int LTR ERVL 1225 1492 -3851 687 202 65 85 chr12 6153077 6153325 -138129164 + MER31-int LTR ERV1 1737 1979 -2957 * 2192 195 68 102 chr12 6153324 6154369 -138128120 + MER31-int LTR ERV1 3455 4463 -1868 396 214 22 0 chr12 6154369 6154458 -138128031 + MER34B LTR ERV1 470 560 -5 1443 232 129 7 chr12 6154467 6154915 -138127574 + L1ME3A LINE L1 3612 4114 -2827 323 171 53 40 chr12 6155119 6155195 -138127294 - MIR SINE MIR -122 140 64 724 266 65 12 chr12 6155247 6155495 -138126994 - MIR SINE MIR 0 262 2 238 219 0 16 chr12 6156027 6156091 -138126398 + GA-rich Low_complexity Low_complexity 2 64 0 642 245 75 75 chr12 6156120 6156373 -138126116 - MER102a DNA MER1_type -4 326 74 269 314 89 32 chr12 6156440 6156564 -138125925 + MIR SINE MIR 4 134 -128 3115 261 60 10 chr12 6156659 6157621 -138124868 + L1ME3A LINE L1 5941 6948 -17 278 298 32 11 chr12 6158448 6158542 -138123947 - MIR SINE MIR -10 252 157 417 272 48 34 chr12 6160769 6160916 -138121573 - MER91A DNA MER1_type -45 151 3 384 286 48 48 chr12 6160928 6161075 -138121414 - MIR SINE MIR -111 151 5 1267 265 170 18 chr12 6161246 6162136 -138120353 + L2 LINE L2 2272 3311 -2 404 309 44 19 chr12 6162139 6162293 -138120196 - MIR SINE MIR -75 133 25 2056 120 45 0 chr12 6162435 6162727 -138119762 + AluSq SINE Alu 1 305 -8 891 241 191 26 chr12 6163859 6164199 -138118290 + LTR33 LTR ERVL 31 426 -95 298 319 44 67 chr12 6164278 6164413 -138118076 - MIR3 SINE MIR -32 176 45 252 237 105 13 chr12 6164420 6164496 -138117993 + MIR SINE MIR 179 261 -1 544 224 26 9 chr12 6164692 6164808 -138117681 - MER91A DNA MER1_type -78 118 1 1413 178 10 40 chr12 6165110 6165413 -138117076 + AluJb SINE Alu 1 294 -18 478 291 166 0 chr12 6165894 6166093 -138116396 - MIR SINE MIR -10 252 21 2204 56 0 0 chr12 6166399 6166665 -138115824 - AluY SINE Alu -12 299 34 189 344 76 8 chr12 6167168 6167299 -138115190 - MIR3 SINE MIR -48 160 21 307 262 97 10 chr12 6168890 6168993 -138113496 + L3b LINE CR1 1268 1379 -204 571 256 70 92 chr12 6169057 6169284 -138113205 - MIR SINE MIR -7 255 34 192 125 0 0 chr12 6169370 6169402 -138113087 + (TGAA)n Simple_repeat Simple_repeat 1 32 0 577 251 29 0 chr12 6169439 6169614 -138112875 + MER104 DNA MER2_type 1 180 0 202 347 40 0 chr12 6169822 6169897 -138112592 + L2 LINE L2 3182 3259 -54 202 239 56 84 chr12 6169990 6170061 -138112428 + L3b LINE CR1 1506 1574 -9 2353 211 42 72 chr12 6170445 6171255 -138111234 + L1MC4 LINE L1 7221 8006 -36 2567 233 46 10 chr12 6172705 6173432 -138109057 - L1MEc LINE L1 -3312 2903 2184 341 269 92 8 chr12 6173457 6173587 -138108902 - L1MEc LINE L1 -6216 180 40 181 311 33 16 chr12 6173594 6173655 -138108834 + MER5A DNA MER1_type 128 189 0 870 266 125 37 chr12 6173888 6174297 -138108192 - L3 LINE CR1 -461 1116 672 275 316 0 0 chr12 6174634 6174713 -138107776 + MIR SINE MIR 58 136 -72 436 338 91 60 chr12 6174951 6175401 -138107088 + L2 LINE L2 2807 3270 -2 330 98 0 0 chr12 6176594 6176645 -138105844 + (CA)n Simple_repeat Simple_repeat 2 52 0 276 231 64 26 chr12 6177166 6177244 -138105245 - MIR3 SINE MIR -7 201 121 210 362 0 0 chr12 6177443 6177501 -138104988 + MIR3 SINE MIR 135 192 -16 341 306 244 10 chr12 6177679 6177872 -138104617 + MIR SINE MIR 3 240 -22 223 341 24 0 chr12 6178233 6178318 -138104171 + L2 LINE L2 2737 2823 -491 696 248 105 19 chr12 6178395 6178605 -138103884 + MIR SINE MIR 35 262 0 317 254 18 5 chr12 6178927 6179020 -138103469 + MLT1I LTR MaLR 72 203 -264 287 210 0 0 chr12 6179301 6179363 -138103126 - MER94 DNA DNA -60 74 13 395 253 0 0 chr12 6179382 6179457 -138103032 + L2 LINE L2 3179 3253 -19 2251 97 7 0 chr12 6179487 6179796 -138102693 - AluSx SINE Alu -1 311 1 500 232 101 7 chr12 6182554 6182692 -138099797 + MIR SINE MIR 32 182 -80 36 82 0 0 chr12 6182870 6182955 -138099534 + AT_rich Low_complexity Low_complexity 1 85 0 367 285 62 41 chr12 6182991 6183164 -138099325 - MIR SINE MIR -61 147 20 709 306 61 66 chr12 6183899 6184291 -138098198 + L3 LINE CR1 1123 1512 -65 182 280 67 73 chr12 6184472 6184622 -138097867 + MIR SINE MIR 4 152 -110 199 250 0 125 chr12 6185464 6185544 -138096945 + L2 LINE L2 3001 3070 -202 473 204 2 18 chr12 6187063 6187516 -138094973 + (CA)n Simple_repeat Simple_repeat 1 445 0 316 292 26 39 chr12 6189601 6189755 -138092734 - MIR3 SINE MIR -35 173 22 3035 247 123 25 chr12 6190806 6192130 -138090359 - L2 LINE L2 0 3313 1854 256 283 38 38 chr12 6194117 6194223 -138088266 + MIR SINE MIR 42 147 -61 289 295 66 25 chr12 6196562 6196684 -138085805 + MIR SINE MIR 20 146 -116 24 0 0 0 chr12 6197726 6197750 -138084739 + AT_rich Low_complexity Low_complexity 1 24 0 816 188 96 14 chr12 6198797 6199015 -138083474 + Charlie1 DNA MER1_type 1 236 -2525 585 220 38 8 chr12 6199002 6199134 -138083355 + Charlie1 DNA MER1_type 2621 2756 -5 * 559 226 8 0 chr12 6202993 6203240 -138079249 + G-rich Low_complexity Low_complexity 1 249 0 705 143 5 53 chr12 6203244 6203433 -138079056 + GA-rich Low_complexity Low_complexity 1 180 0 299 68 0 23 chr12 6203436 6203480 -138079009 + (GGGA)n Simple_repeat Simple_repeat 4 46 0 219 246 0 0 chr12 6203486 6203543 -138078946 + A-rich Low_complexity Low_complexity 1 57 0 * 524 153 16 44 chr12 6203541 6203724 -138078765 + GA-rich Low_complexity Low_complexity 3 180 0 774 153 23 11 chr12 6203745 6203921 -138078568 + GA-rich Low_complexity Low_complexity 3 180 0 401 152 18 36 chr12 6203933 6204045 -138078444 + GA-rich Low_complexity Low_complexity 3 112 0 431 329 7 14 chr12 6204311 6204454 -138078035 - MER5A DNA MER1_type -13 176 35 213 292 34 11 chr12 6204636 6204725 -138077764 + MIR SINE MIR 48 138 -70 509 291 37 32 chr12 6204744 6204933 -138077556 - MIR3 SINE MIR 0 208 19 513 276 65 35 chr12 6205092 6205291 -138077198 + LTR33 LTR ERVL 314 518 -3 1040 255 77 20 chr12 6205325 6205678 -138076811 + L2 LINE L2 2941 3313 0 235 314 116 0 chr12 6205764 6205850 -138076639 + MIR SINE MIR 21 116 -92 313 250 170 0 chr12 6207518 6207618 -138074871 + MIR SINE MIR 34 150 -112 439 348 25 6 chr12 6207753 6207914 -138074575 + L2 LINE L2 3102 3265 -7 460 237 90 0 chr12 6208148 6208274 -138074215 - MIR SINE MIR -62 146 58 250 319 115 13 chr12 6208625 6208782 -138073707 - L2 LINE L2 -926 2388 2216 2702 70 123 5 chr12 6209025 6209385 -138073104 + MLT2A1 LTR ERVL 1 414 -30 478 53 13 13 chr12 6209385 6209460 -138073029 + (TA)n Simple_repeat Simple_repeat 2 76 0 2702 70 123 5 chr12 6209460 6209496 -138072993 + MLT2A1 LTR ERVL 414 444 0 4716 49 9 0 chr12 6209496 6210071 -138072418 + HERVL-A1 LTR ERVL 1 580 -5074 * 29763 63 9 5 chr12 6210063 6213704 -138068785 + HERVL-A1 LTR ERVL 765 4420 -1234 2163 80 27 23 chr12 6213704 6214004 -138068485 - THE1A LTR MaLR 0 355 55 291 265 191 37 chr12 6264573 6264762 -138017727 + MIR SINE MIR 31 248 -14 1963 107 0 0 chr12 6264913 6265184 -138017305 + AluSg SINE Alu 37 307 -3 228 289 0 40 chr12 6266841 6266917 -138015572 + L1MC/D LINE L1 5708 5780 -2028 1770 166 0 0 chr12 6266954 6267256 -138015233 + AluJb SINE Alu 1 302 -10 1263 191 36 13 chr12 6267379 6267682 -138014807 + L1MC3 LINE L1 7473 7782 -3 649 173 48 48 chr12 6268234 6268402 -138014087 - MER53 DNA DNA -19 170 3 496 283 40 80 chr12 6268439 6268518 -138013971 - MIR SINE MIR -44 218 137 2009 143 0 3 chr12 6268518 6268826 -138013663 - AluSx SINE Alu -3 309 3 496 283 40 80 chr12 6268826 6268972 -138013517 - MIR SINE MIR -125 137 2 234 266 31 16 chr12 6269315 6269379 -138013110 + L3b LINE CR1 1503 1567 -16 2179 100 0 3 chr12 6269398 6269697 -138012792 - AluSg SINE Alu -12 298 1 317 260 133 87 chr12 6269769 6269919 -138012570 - MIR SINE MIR -1 261 105 * 989 271 89 39 chr12 6269918 6270379 -138012110 - L2 LINE L2 0 3313 2830 2375 68 0 0 chr12 6270658 6270954 -138011535 - AluY SINE Alu -14 297 2 654 152 0 0 chr12 6270988 6271113 -138011376 + (TGGA)n Simple_repeat Simple_repeat 1 125 0 2145 91 0 31 chr12 6271538 6271857 -138010632 + AluY SINE Alu 1 309 -2 207 329 7 20 chr12 6272549 6272701 -138009788 + (CA)n Simple_repeat Simple_repeat 1 150 0 1143 121 0 0 chr12 6273963 6274263 -138008226 + (CA)n Simple_repeat Simple_repeat 1 300 0 475 252 208 6 chr12 6274833 6274992 -138007497 + MIR SINE MIR 37 227 -35 2313 129 151 0 chr12 6275507 6275911 -138006578 + MER4C LTR ERV1 1 465 0 841 322 140 7 chr12 6276801 6277556 -138004933 + L2 LINE L2 2120 2975 -339 381 282 0 28 chr12 6279431 6279612 -138002877 + CT-rich Low_complexity Low_complexity 3 178 0 376 277 0 43 chr12 6279654 6280124 -138002365 + CT-rich Low_complexity Low_complexity 1 449 0 372 274 0 40 chr12 6280147 6280714 -138001775 + CT-rich Low_complexity Low_complexity 1 544 0 378 293 0 28 chr12 6280755 6280936 -138001553 + CT-rich Low_complexity Low_complexity 3 178 0 313 243 0 62 chr12 6280957 6281101 -138001388 + CT-rich Low_complexity Low_complexity 3 137 0 258 297 17 51 chr12 6281325 6281443 -138001046 - L2 LINE L2 -453 2861 2748 271 273 63 98 chr12 6281744 6282154 -138000335 + L2 LINE L2 2466 2861 -453 331 209 0 92 chr12 6282378 6282574 -137999915 + GA-rich Low_complexity Low_complexity 3 180 0 314 313 0 26 chr12 6282617 6282966 -137999523 + GA-rich Low_complexity Low_complexity 1 339 0 393 214 0 73 chr12 6282987 6283179 -137999310 + GA-rich Low_complexity Low_complexity 3 180 0 340 307 0 26 chr12 6283201 6283550 -137998939 + GA-rich Low_complexity Low_complexity 1 339 0 306 320 0 22 chr12 6283594 6283772 -137998717 + GA-rich Low_complexity Low_complexity 4 177 0 300 316 0 26 chr12 6283793 6284142 -137998347 + GA-rich Low_complexity Low_complexity 1 339 0 312 307 0 28 chr12 6284185 6284364 -137998125 + GA-rich Low_complexity Low_complexity 4 177 0 326 302 0 28 chr12 6284407 6284586 -137997903 + GA-rich Low_complexity Low_complexity 4 177 0 314 311 0 28 chr12 6284607 6284787 -137997702 + GA-rich Low_complexity Low_complexity 3 177 0 312 315 0 26 chr12 6284829 6285252 -137997237 + GA-rich Low_complexity Low_complexity 1 411 0 344 300 0 28 chr12 6285273 6285453 -137997036 + GA-rich Low_complexity Low_complexity 3 177 0 344 286 0 33 chr12 6285495 6285677 -137996812 + GA-rich Low_complexity Low_complexity 3 178 0 350 321 81 32 chr12 6285803 6286024 -137996465 + L2 LINE L2 2630 2861 -453 312 297 0 38 chr12 6286248 6286762 -137995727 + GA-rich Low_complexity Low_complexity 1 494 0 354 291 0 28 chr12 6286805 6286984 -137995505 + GA-rich Low_complexity Low_complexity 4 177 0 353 298 0 28 chr12 6287005 6287186 -137995303 + GA-rich Low_complexity Low_complexity 3 178 0 180 320 72 31 chr12 6287885 6287982 -137994507 - L2 LINE L2 -568 2746 2646 228 241 0 0 chr12 6287985 6288043 -137994446 + (TGGA)n Simple_repeat Simple_repeat 4 61 0 198 254 18 91 chr12 6288234 6288344 -137994145 + L2 LINE L2 2901 3002 -270 970 185 16 22 chr12 6288561 6288745 -137993744 - MIR SINE MIR 0 262 80 309 306 0 0 chr12 6289688 6289760 -137992729 + L2 LINE L2 3168 3239 -33 554 214 29 0 chr12 6290230 6290333 -137992156 - MER5B DNA MER1_type -1 177 72 180 200 29 0 chr12 6290329 6290364 -137992125 + MER5B DNA MER1_type 142 177 -1 * 1931 172 26 48 chr12 6290458 6290789 -137991700 - L1M LINE L1 -743 5403 5120 1369 212 38 46 chr12 6290789 6291157 -137991332 + MLT1A1 LTR MaLR 1 365 0 1931 172 26 48 chr12 6291157 6291359 -137991130 - L1M LINE L1 -1026 5120 4915 21 57 0 0 chr12 6291374 6291409 -137991080 + AT_rich Low_complexity Low_complexity 1 35 0 2758 172 13 2 chr12 6291455 6292022 -137990467 - L1M2 LINE L1 -559 5753 5174 353 364 59 62 chr12 6292297 6292940 -137989549 - L1MEc LINE L1 -5700 696 56 376 170 0 0 chr12 6292944 6293011 -137989478 - Alu SINE Alu -250 53 1 2210 106 0 13 chr12 6293027 6293330 -137989159 + AluSq SINE Alu 1 299 -14 25 0 0 0 chr12 6293398 6293423 -137989066 + AT_rich Low_complexity Low_complexity 1 25 0 2203 89 17 0 chr12 6293425 6293727 -137988762 + AluSc SINE Alu 1 307 -2 196 298 106 21 chr12 6293871 6293965 -137988524 - L2 LINE L2 -12 3260 3159 862 208 48 34 chr12 6294182 6294389 -137988100 - MLT1J2 LTR MaLR -240 210 1 375 23 0 0 chr12 6294554 6294598 -137987891 + (TGGA)n Simple_repeat Simple_repeat 4 47 0 3872 179 34 1 chr12 6295047 6295778 -137986711 + L1MB7 LINE L1 5427 6181 -3 1117 246 46 94 chr12 6295778 6296545 -137985944 + L1MDa LINE L1 1310 2039 -4501 21 0 0 0 chr12 6296813 6296834 -137985655 + AT_rich Low_complexity Low_complexity 1 21 0 508 269 82 39 chr12 6297070 6297278 -137985211 + L2 LINE L2 2842 3058 -255 5293 101 22 14 chr12 6297299 6297750 -137984739 + L1PB2 LINE L1 5337 5800 -351 363 73 0 0 chr12 6297750 6297805 -137984684 + (TG)n Simple_repeat Simple_repeat 2 56 0 5293 101 22 14 chr12 6297805 6298154 -137984335 + L1PB2 LINE L1 5800 6144 -7 183 42 0 0 chr12 6299460 6299484 -137983005 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 24 0 0 0 chr12 6299722 6299746 -137982743 + GC_rich Low_complexity Low_complexity 1 24 0 208 272 9 35 chr12 6299788 6299902 -137982587 + (CCCCG)n Simple_repeat Simple_repeat 5 115 0 534 309 99 4 chr12 6300832 6301065 -137981424 - MIR SINE MIR -6 256 2 520 224 40 59 chr12 6302030 6302182 -137980307 + MIR3 SINE MIR 36 184 -24 339 300 114 0 chr12 6302694 6302834 -137979655 - MIR SINE MIR -75 187 32 2306 84 0 0 chr12 6307437 6307733 -137974756 + AluSc SINE Alu 1 296 -13 954 302 102 26 chr12 6308319 6308779 -137973710 + L2 LINE L2 2255 2749 -565 851 351 38 7 chr12 6308807 6309228 -137973261 + L1ME LINE L1 378 811 -5605 672 291 37 75 chr12 6309445 6309711 -137972778 + L1ME LINE L1 871 1052 -5364 3757 38 9 0 chr12 6309711 6310160 -137972329 - L1PA3 LINE L1 0 6155 5703 672 291 37 75 chr12 6310160 6310494 -137971995 + L1ME LINE L1 1052 1397 -5019 2948 123 136 6 chr12 6310499 6311005 -137971484 + Tigger3b DNA MER2_type 1 572 -659 865 147 14 0 chr12 6311006 6311149 -137971340 + FRAM SINE Alu 20 164 -12 3990 118 39 8 chr12 6311151 6311798 -137970691 + Tigger3b DNA MER2_type 565 1231 0 1320 260 150 32 chr12 6311798 6312898 -137969591 + L1MC/D LINE L1 1247 2673 -3934 1657 181 0 7 chr12 6312905 6313204 -137969285 + AluJb SINE Alu 11 307 -5 3705 242 67 51 chr12 6313390 6313424 -137969065 + L1MC/D LINE L1 2641 2673 -3753 1766 161 30 3 chr12 6313424 6313723 -137968766 + AluJo SINE Alu 1 307 -5 3705 242 67 51 chr12 6313723 6314540 -137967949 + L1MC/D LINE L1 2673 3475 -2951 187 53 26 26 chr12 6314540 6314578 -137967911 + (TATAA)n Simple_repeat Simple_repeat 2 39 0 3705 242 67 51 chr12 6314578 6315340 -137967149 + L1MC/D LINE L1 3475 4286 -2140 3668 116 6 4 chr12 6315342 6315852 -137966637 + MER1A DNA MER1_type 19 529 0 4048 203 79 54 chr12 6315858 6316313 -137966176 + L1MC/D LINE L1 4296 4738 -1704 1209 206 66 71 chr12 6316313 6316678 -137965811 + MLT1A1 LTR MaLR 1 363 -2 4048 203 79 54 chr12 6316678 6317026 -137965463 + L1MC/D LINE L1 4738 5076 -1366 2376 86 0 26 chr12 6317026 6317339 -137965150 - AluSc SINE Alu -4 305 1 4048 203 79 54 chr12 6317339 6318028 -137964461 + L1MC/D LINE L1 5076 5821 -621 518 158 0 11 chr12 6318154 6318249 -137964240 - AluJ/FRAM SINE Alu 0 312 219 2316 70 0 33 chr12 6318416 6318710 -137963779 + AluY SINE Alu 1 285 -22 666 37 0 0 chr12 6318710 6318791 -137963698 + (CATA)n Simple_repeat Simple_repeat 2 82 0 215 61 30 0 chr12 6320760 6320793 -137961696 + (CA)n Simple_repeat Simple_repeat 2 35 0 302 262 12 0 chr12 6321514 6321598 -137960891 + L1MC/D LINE L1 6003 6087 -2001 211 214 0 0 chr12 6321599 6321641 -137960848 + L2 LINE L2 3266 3307 -6 1889 125 4 0 chr12 6323004 6323260 -137959229 + AluSx SINE Alu 1 257 -55 210 71 0 0 chr12 6323302 6323330 -137959159 + (CAAA)n Simple_repeat Simple_repeat 1 28 0 816 71 0 0 chr12 6330422 6330520 -137951969 + AluY SINE Alu 198 295 -16 244 343 29 19 chr12 6330788 6330893 -137951596 - L2 LINE L2 -5 3308 3203 245 317 8 42 chr12 6331456 6331576 -137950913 - L3 LINE CR1 -246 1331 1216 1428 272 67 58 chr12 6331628 6332079 -137950410 + L1MC5 LINE L1 5548 5993 -1992 1603 195 3 3 chr12 6332079 6332361 -137950128 + AluJb SINE Alu 1 282 -30 223 71 48 0 chr12 6332365 6332407 -137950082 + (TA)n Simple_repeat Simple_repeat 1 44 0 1428 272 67 58 chr12 6332407 6332758 -137949731 + L1MC5 LINE L1 5995 6341 -1644 1988 120 4 7 chr12 6332758 6333034 -137949455 - AluSx SINE Alu -16 296 22 1428 272 67 58 chr12 6333034 6333870 -137948619 + L1MC5 LINE L1 6341 7232 -753 2124 108 28 0 chr12 6333961 6334248 -137948241 + AluSc SINE Alu 1 295 -14 2484 73 0 19 chr12 6334251 6334568 -137947921 + AluY SINE Alu 1 311 0 680 135 0 8 chr12 6334585 6334711 -137947778 + (GGGA)n Simple_repeat Simple_repeat 2 126 0 529 286 38 19 chr12 6334794 6335004 -137947485 + L1MC5 LINE L1 7313 7526 -435 220 234 0 117 chr12 6335536 6335613 -137946876 + L2 LINE L2 3205 3272 0 189 107 0 0 chr12 6335613 6335641 -137946848 + (TGGA)n Simple_repeat Simple_repeat 2 29 0 747 174 0 0 chr12 6335686 6335801 -137946688 + FLAM_A SINE Alu 1 115 -18 274 304 52 37 chr12 6335850 6335985 -137946504 + L2 LINE L2 3177 3313 0 246 156 0 0 chr12 6336114 6336159 -137946330 + (TGGA)n Simple_repeat Simple_repeat 1 45 0 746 95 17 34 chr12 6337840 6338019 -137944470 + (TAGA)n Simple_repeat Simple_repeat 3 178 0 756 87 43 36 chr12 6338060 6338515 -137943974 + (TAGA)n Simple_repeat Simple_repeat 1 458 0 211 321 175 7 chr12 6338565 6338702 -137943787 + MIR SINE MIR 88 247 -15 264 277 0 0 chr12 6338704 6338769 -137943720 + MIR3 SINE MIR 133 197 -11 402 348 153 22 chr12 6338895 6339340 -137943149 - L3 LINE CR1 -835 742 240 192 286 66 11 chr12 6340585 6340676 -137941813 - MIR3 SINE MIR -32 176 81 316 182 27 0 chr12 6340725 6340803 -137941686 + MIR SINE MIR 104 183 -79 374 249 145 42 chr12 6341156 6341349 -137941140 - MIR SINE MIR -1 261 49 2156 136 3 3 chr12 6341386 6341694 -137940795 - AluSx SINE Alu -4 308 1 521 230 140 11 chr12 6341753 6341931 -137940558 - MIR SINE MIR -30 232 32 1531 229 46 15 chr12 6342072 6342465 -137940024 + L1ME1 LINE L1 5757 6161 -5 24 0 0 0 chr12 6343119 6343143 -137939346 + AT_rich Low_complexity Low_complexity 1 24 0 225 0 0 0 chr12 6345334 6345359 -137937130 + (A)n Simple_repeat Simple_repeat 1 25 0 245 273 66 58 chr12 6345424 6345545 -137936944 + MIR SINE MIR 11 132 -130 417 39 0 0 chr12 6345617 6345668 -137936821 + (CA)n Simple_repeat Simple_repeat 1 51 0 499 269 90 0 chr12 6345668 6345813 -137936676 - MER103 DNA DNA -1 165 8 186 171 0 0 chr12 6345988 6346029 -137936460 + (TAA)n Simple_repeat Simple_repeat 3 43 0 1110 199 75 72 chr12 6346566 6346912 -137935577 + MLT1J LTR MaLR 4 350 -161 366 235 121 20 chr12 6347398 6347547 -137934942 - MIR3 SINE MIR -15 193 30 255 218 0 0 chr12 6348064 6348119 -137934370 + L1MC4 LINE L1 6648 6702 -1340 * 277 189 14 27 chr12 6348089 6348163 -137934326 - L1MC4 LINE L1 -1340 6702 6630 229 237 51 0 chr12 6348206 6348265 -137934224 - MIR SINE MIR -109 153 92 1437 64 16 0 chr12 6349431 6349618 -137932871 - MER30B DNA MER1_type 0 190 1 312 253 0 33 chr12 6350776 6350867 -137931622 - MIR3 SINE MIR -23 185 98 198 0 0 0 chr12 6351198 6351220 -137931269 + (A)n Simple_repeat Simple_repeat 1 22 0 363 325 52 19 chr12 6351900 6352112 -137930377 + MIR SINE MIR 30 248 -14 1984 68 0 0 chr12 6352664 6352898 -137929591 + AluY SINE Alu 1 234 -77 198 0 0 0 chr12 6352913 6352935 -137929554 + (A)n Simple_repeat Simple_repeat 1 22 0 252 0 0 0 chr12 6352935 6352963 -137929526 + (TA)n Simple_repeat Simple_repeat 2 29 0 2207 105 16 7 chr12 6353146 6353451 -137929038 - AluSg SINE Alu -2 308 1 357 24 0 0 chr12 6353892 6353934 -137928555 + (CA)n Simple_repeat Simple_repeat 2 43 0 970 300 98 42 chr12 6354365 6354958 -137927531 + HAL1b LINE L1 5 662 -686 2485 45 7 16 chr12 6354958 6355266 -137927223 + AluY SINE Alu 3 307 -4 970 300 98 42 chr12 6355266 6355533 -137926956 + HAL1b LINE L1 662 913 -435 23 68 0 0 chr12 6355657 6355701 -137926788 + AT_rich Low_complexity Low_complexity 1 44 0 1035 301 119 54 chr12 6355723 6356827 -137925662 + L1MC4a LINE L1 2139 3313 -2833 283 188 16 0 chr12 6356924 6356988 -137925501 + L1P LINE L1 3343 3407 -2739 413 295 14 58 chr12 6357116 6357323 -137925166 + L1MC4a LINE L1 3507 3704 -2442 607 110 0 0 chr12 6357339 6357421 -137925068 + L1M4c LINE L1 29 110 -6274 * 1046 159 10 0 chr12 6357420 6357615 -137924874 + L1M4c LINE L1 860 1056 -5328 * 2125 106 14 35 chr12 6357603 6357970 -137924519 + L1M4c LINE L1 1924 2282 -4102 1802 157 12 26 chr12 6357972 6358232 -137924257 + L1MB3 LINE L1 5842 6097 -86 2088 56 0 8 chr12 6358232 6358483 -137924006 - AluY SINE Alu 0 311 63 1802 157 12 26 chr12 6358483 6358566 -137923923 + L1MB3 LINE L1 6097 6180 -3 725 253 125 112 chr12 6358577 6358876 -137923613 + L1MC4a LINE L1 3692 3986 -2160 240 111 0 0 chr12 6358876 6358912 -137923577 + (TG)n Simple_repeat Simple_repeat 1 36 0 725 253 125 112 chr12 6358912 6359752 -137922737 + L1MC4a LINE L1 3986 4846 -1300 8352 229 43 27 chr12 6359914 6360932 -137921557 + L1MB1 LINE L1 2596 3596 -3969 2102 103 0 14 chr12 6360932 6361213 -137921276 + AluSc SINE Alu 1 277 -32 191 35 0 35 chr12 6361213 6361242 -137921247 + (TAAA)n Simple_repeat Simple_repeat 1 28 0 8352 229 43 27 chr12 6361242 6363334 -137919155 + L1MB1 LINE L1 3595 5784 -1781 5273 160 19 17 chr12 6363316 6363865 -137918624 + L1MB1 LINE L1 6350 6896 -691 * 360 0 0 0 chr12 6363865 6363905 -137918584 + (CA)n Simple_repeat Simple_repeat 2 41 0 5273 160 19 17 chr12 6363905 6364579 -137917910 + L1MB1 LINE L1 6896 7581 -6 1715 220 58 76 chr12 6364584 6365174 -137917315 + L1MC4a LINE L1 5310 5888 -1920 180 0 0 0 chr12 6367123 6367143 -137915346 + (TG)n Simple_repeat Simple_repeat 2 21 0 2618 57 0 0 chr12 6367144 6367440 -137915049 - AluY SINE Alu -15 296 1 1666 274 144 11 chr12 6368223 6369267 -137913222 - L2 LINE L2 -5 3308 2128 226 254 34 0 chr12 6369277 6369336 -137913153 - MIR SINE MIR -63 145 85 217 384 120 0 chr12 6369600 6369725 -137912764 - L2 LINE L2 0 3272 3133 186 43 0 0 chr12 6369730 6369753 -137912736 + (CAATA)n Simple_repeat Simple_repeat 2 24 0 407 253 96 7 chr12 6370796 6370942 -137911547 - MIR3 SINE MIR -23 185 27 438 239 32 134 chr12 6372063 6372310 -137910179 - MIR SINE MIR -14 248 27 181 305 98 0 chr12 6372640 6372722 -137909767 - MIR SINE MIR -73 135 46 247 254 16 0 chr12 6374846 6374909 -137907580 - L2 LINE L2 0 3272 3209 219 148 0 49 chr12 6376164 6376225 -137906264 + (TAAA)n Simple_repeat Simple_repeat 3 60 0 491 200 9 9 chr12 6376784 6376894 -137905595 - MER3 DNA MER1_type 0 209 100 920 150 0 0 chr12 6377528 6377661 -137904828 - FLAM_C SINE Alu -10 133 1 2327 117 3 0 chr12 6379181 6379489 -137903000 + AluSx SINE Alu 1 309 -3 202 273 162 0 chr12 6380691 6380790 -137901699 - MIR SINE MIR -117 145 31 1410 159 19 0 chr12 6381095 6381352 -137901137 + L1MA5 LINE L1 6037 6298 -2 238 310 95 57 chr12 6381373 6381531 -137900958 + L3 LINE CR1 1190 1353 -224 417 264 72 20 chr12 6381545 6381857 -137900632 + L2 LINE L2 2758 3082 -231 1484 183 83 40 chr12 6381905 6382277 -137900212 + MLT1D LTR MaLR 118 505 0 339 25 0 0 chr12 6382283 6382323 -137900166 + (CA)n Simple_repeat Simple_repeat 2 41 0 369 200 62 0 chr12 6382339 6382419 -137900070 + L2 LINE L2 3229 3313 0 6411 70 10 6 chr12 6382823 6383717 -137898772 + L1P LINE L1 1611 2508 -3638 390 308 77 18 chr12 6384956 6385125 -137897364 + MER5A DNA MER1_type 10 188 -1 2113 128 0 10 chr12 6385185 6385481 -137897008 + AluSx SINE Alu 1 293 -19 949 61 0 0 chr12 6386680 6386795 -137895694 + AluSc SINE Alu 194 308 -1 2585 59 3 0 chr12 6386797 6387104 -137895385 + AluY SINE Alu 1 308 -3 220 271 102 0 chr12 6387104 6387163 -137895326 + MIR SINE MIR 51 115 -147 615 231 0 0 chr12 6387163 6387470 -137895019 + (CA)n Simple_repeat Simple_repeat 1 307 0 293 182 18 0 chr12 6387474 6387529 -137894960 + (CATA)n Simple_repeat Simple_repeat 1 56 0 461 275 48 16 chr12 6388674 6388863 -137893626 + MER91A DNA MER1_type 1 195 -1 1653 100 6 108 chr12 6390230 6390618 -137891871 + Tigger4(Zombi) DNA MER2_type 1 2731 0 236 221 19 19 chr12 6390660 6390743 -137891746 - MIR SINE MIR -60 148 69 762 258 181 25 chr12 6391200 6391720 -137890769 + L1ME4a LINE L1 5519 6119 -2 200 267 124 19 chr12 6394412 6394573 -137887916 + MIR3 SINE MIR 24 201 -7 237 231 0 46 chr12 6394706 6394771 -137887718 - MIR3 SINE MIR -15 193 132 315 250 71 27 chr12 6394980 6395092 -137887397 - MIR SINE MIR -122 140 24 457 188 80 212 chr12 6395392 6395587 -137886902 + MER5C DNA MER1_type 1 220 -104 2261 114 0 16 chr12 6395587 6395895 -137886594 + AluSx SINE Alu 1 303 -9 2505 55 3 0 chr12 6395895 6396186 -137886303 - AluY SINE Alu -19 292 1 457 188 80 212 chr12 6396186 6396314 -137886175 + MER5C DNA MER1_type 218 282 -42 228 300 175 8 chr12 6398173 6398293 -137884196 - MIR3 SINE MIR -8 200 61 276 292 5 108 chr12 6399397 6399592 -137882897 + L2 LINE L2 3074 3248 -65 2345 87 14 3 chr12 6400380 6400669 -137881820 + AluSx SINE Alu 1 292 -20 1458 294 101 20 chr12 6401272 6402077 -137880412 + L2 LINE L2 1765 2634 -680 314 353 129 7 chr12 6402107 6402596 -137879893 - L1ME3A LINE L1 -222 5948 5397 2282 109 0 0 chr12 6402602 6402905 -137879584 - AluSc SINE Alu -6 303 1 2388 98 0 0 chr12 6402907 6403202 -137879287 - AluSx SINE Alu -17 295 1 258 252 122 41 chr12 6404031 6404154 -137878335 + MIR SINE MIR 50 182 -80 256 366 142 19 chr12 6404254 6404929 -137877560 + L2 LINE L2 2004 2761 -553 2361 81 17 0 chr12 6405117 6405412 -137877077 + AluSq SINE Alu 1 300 -13 734 257 44 24 chr12 6405413 6405709 -137876780 + L1MC5 LINE L1 7616 7917 -44 2293 82 58 0 chr12 6405719 6406013 -137876476 - AluY SINE Alu 0 311 1 230 330 139 9 chr12 6406033 6406069 -137876420 + L2 LINE L2 3140 3170 -102 1548 199 3 11 chr12 6406069 6406351 -137876138 - AluJo SINE Alu -32 280 1 230 330 139 9 chr12 6406351 6406429 -137876060 + L2 LINE L2 3170 3269 -3 490 311 60 0 chr12 6406801 6406952 -137875537 + MIR3 SINE MIR 35 194 -14 556 148 20 0 chr12 6407319 6407420 -137875069 - L1MD1 LINE L1 0 6242 6140 254 318 19 28 chr12 6407772 6407879 -137874610 - MIR SINE MIR -152 110 5 482 224 239 40 chr12 6408032 6408233 -137874256 + MIR SINE MIR 3 243 -19 255 376 55 0 chr12 6408985 6409094 -137873395 - L2 LINE L2 -9 3263 3149 279 223 96 11 chr12 6409526 6409620 -137872869 - L3b LINE CR1 -196 1387 1286 238 276 0 120 chr12 6409777 6409934 -137872555 - MIR SINE MIR -77 131 22 369 0 0 0 chr12 6410201 6410242 -137872247 + (CA)n Simple_repeat Simple_repeat 2 42 0 858 153 0 0 chr12 6410242 6410360 -137872129 - FRAM SINE Alu -36 140 23 1349 154 45 12 chr12 6411755 6411924 -137870565 - AluJo SINE Alu -12 300 119 423 0 0 0 chr12 6411924 6411971 -137870518 + (TTA)n Simple_repeat Simple_repeat 2 48 0 1349 154 45 12 chr12 6411971 6412047 -137870442 - AluJo SINE Alu -193 119 47 370 219 142 52 chr12 6412726 6412881 -137869608 - MIR3 SINE MIR -31 177 9 907 221 55 48 chr12 6413619 6413866 -137868623 + L2 LINE L2 3022 3273 -40 1902 149 70 6 chr12 6413866 6414209 -137868280 - MLT1A1 LTR MaLR 0 365 1 907 221 55 48 chr12 6414209 6414251 -137868238 + L2 LINE L2 3273 3313 0 2331 121 0 0 chr12 6415362 6415669 -137866820 + AluSx SINE Alu 1 307 -5 373 288 49 43 chr12 6415730 6415893 -137866596 + MIR3 SINE MIR 36 199 -9 2428 184 27 16 chr12 6416131 6416647 -137865842 + Charlie1b DNA MER1_type 1 522 -1 233 282 0 42 chr12 6416794 6416865 -137865624 + MIR SINE MIR 109 176 -86 224 33 0 0 chr12 6418974 6419004 -137863485 - MER91B DNA MER1_type -126 64 35 284 263 237 13 chr12 6419884 6420040 -137862449 - MIR3 SINE MIR -3 205 15 2447 82 0 7 chr12 6422294 6422599 -137859890 + AluSx SINE Alu 1 303 -9 1858 133 13 66 chr12 6422915 6423232 -137859257 - AluSx SINE Alu -12 300 1 1905 155 16 10 chr12 6423244 6423276 -137859213 - AluJb SINE Alu 0 312 282 372 43 0 0 chr12 6423276 6423322 -137859167 + (TG)n Simple_repeat Simple_repeat 1 46 0 1905 155 16 10 chr12 6423322 6423598 -137858891 - AluJb SINE Alu -30 282 2 501 247 126 37 chr12 6423601 6423791 -137858698 - MIR SINE MIR -38 224 18 609 256 150 6 chr12 6424896 6425076 -137857413 + MIR SINE MIR 35 240 -22 2335 108 0 0 chr12 6427314 6427610 -137854879 - AluSx SINE Alu -16 296 1 207 0 0 0 chr12 6428931 6428954 -137853535 + (A)n Simple_repeat Simple_repeat 1 23 0 273 226 94 75 chr12 6430439 6430545 -137851944 - MER5B DNA MER1_type -40 138 31 528 239 52 7 chr12 6430766 6430921 -137851568 + MER104 DNA Tc2 1 162 -18 1974 131 0 18 chr12 6431485 6431767 -137850722 + AluSx SINE Alu 15 291 -21 261 258 0 15 chr12 6431957 6432023 -137850466 + MIR SINE MIR 46 110 -152 210 37 0 0 chr12 6432484 6432511 -137849978 + (CAT)n Simple_repeat Simple_repeat 2 28 0 2465 70 0 13 chr12 6433768 6434069 -137848420 + AluY SINE Alu 1 297 -14 321 297 87 82 chr12 6434457 6434676 -137847813 + L2 LINE L2 2965 3184 -88 2150 108 0 0 chr12 6435778 6436081 -137846408 - AluSc SINE Alu 0 303 1 2090 184 26 38 chr12 6436086 6436417 -137846072 + Charlie1b DNA MER1_type 1 325 -2436 2427 79 0 0 chr12 6436417 6436708 -137845781 - AluSg SINE Alu -19 291 1 2090 184 26 38 chr12 6436708 6436904 -137845585 + Charlie1b DNA MER1_type 325 522 -1 2131 131 80 5 chr12 6436912 6437286 -137845203 + MER57A LTR ERV1 2 403 0 1247 167 41 54 chr12 6437460 6437754 -137844735 - AluSq SINE Alu -20 293 4 1764 148 32 4 chr12 6437754 6438032 -137844457 + AluSx SINE Alu 21 306 -6 199 257 7 140 chr12 6438032 6438083 -137844406 + MIR SINE MIR 100 156 -106 1388 241 82 33 chr12 6438083 6438569 -137843920 + MLT1J LTR MaLR 2 511 0 199 257 7 140 chr12 6438569 6438653 -137843836 + MIR SINE MIR 156 217 -45 1568 56 0 80 chr12 6440103 6440353 -137842136 + L1PA8 LINE L1 5939 6168 -4 184 343 20 10 chr12 6440572 6440674 -137841815 - MIR SINE MIR -72 136 34 2565 42 3 23 chr12 6441798 6442107 -137840382 - AluY SINE Alu -8 303 1 247 365 0 0 chr12 6442162 6442247 -137840242 + L3 LINE CR1 1491 1575 -2 298 264 46 0 chr12 6442553 6442640 -137839849 + MER91B DNA MER1_type 56 146 -44 2483 64 0 3 chr12 6442640 6442936 -137839553 + AluY SINE Alu 1 295 -16 251 228 35 0 chr12 6442950 6443007 -137839482 + MER91B DNA MER1_type 130 188 -2 2594 70 0 0 chr12 6444399 6444700 -137837789 - AluY SINE Alu -10 301 1 378 42 0 0 chr12 6445046 6445094 -137837395 + (TCC)n Simple_repeat Simple_repeat 2 49 0 376 297 116 0 chr12 6445125 6445280 -137837209 - MIR SINE MIR -41 221 49 1104 157 0 0 chr12 6445983 6446155 -137836334 - FRAM SINE Alu -8 168 1 319 210 96 0 chr12 6446266 6446373 -137836116 + MIR SINE MIR 13 133 -75 1190 137 21 0 chr12 6446570 6446760 -137835729 + MER72 LTR ERV1 3 196 -526 936 206 12 0 chr12 6446788 6446958 -137835531 - AluSg/x SINE Alu -14 298 127 217 277 0 15 chr12 6446964 6447029 -137835460 + (CGTG)n Simple_repeat Simple_repeat 4 67 0 495 0 0 0 chr12 6447062 6447117 -137835372 + (TG)n Simple_repeat Simple_repeat 1 55 0 2094 204 19 16 chr12 6447132 6447564 -137834925 + MER49 LTR ERV1 491 923 0 457 249 78 48 chr12 6447657 6448003 -137834486 + LTR16A LTR ERVL 13 420 -30 727 263 171 0 chr12 6448466 6448717 -137833772 + MLT1D LTR MaLR 207 500 -5 874 228 53 103 chr12 6448980 6449153 -137833336 + MSTD LTR MaLR 1 181 -215 1563 175 0 44 chr12 6449153 6449450 -137833039 - AluJb SINE Alu -9 303 20 874 228 53 103 chr12 6449450 6449693 -137832796 + MSTD LTR MaLR 181 396 0 1579 171 96 3 chr12 6450121 6450414 -137832075 - 7SLRNA srpRNA srpRNA 0 320 1 552 30 0 0 chr12 6450538 6450604 -137831885 + (TGGA)n Simple_repeat Simple_repeat 2 67 0 184 368 24 16 chr12 6450656 6450781 -137831708 + L2 LINE L2 2915 3040 -232 1133 200 161 82 chr12 6451412 6451599 -137830890 + MLT1D LTR MaLR 3 174 -331 2104 104 4 7 chr12 6451599 6451877 -137830612 + AluSc SINE Alu 1 277 -32 269 45 0 45 chr12 6451878 6451922 -137830567 + (CAAAA)n Simple_repeat Simple_repeat 1 42 0 1133 200 161 82 chr12 6451922 6452198 -137830291 + MLT1D LTR MaLR 173 505 0 323 221 35 47 chr12 6452397 6452483 -137830006 + MIR3 SINE MIR 113 197 -11 260 203 0 17 chr12 6452816 6452875 -137829614 + L1MEd LINE L1 2 59 -6060 2305 87 13 16 chr12 6452940 6453251 -137829238 + AluY SINE Alu 1 310 -1 621 233 21 83 chr12 6453354 6453481 -137829008 + L1MEd LINE L1 284 417 -5702 2194 132 3 0 chr12 6453481 6453785 -137828704 + AluSx SINE Alu 1 305 -7 621 233 21 83 chr12 6453785 6454026 -137828463 + L1MEd LINE L1 417 671 -5448 7424 26 1 0 chr12 6454026 6455348 -137827141 + L1PA3 LINE L1 4823 6154 -1 621 233 21 83 chr12 6455348 6455650 -137826839 + L1MEd LINE L1 671 1029 -5090 924 192 0 0 chr12 6455672 6455823 -137826666 + MER63A DNA MER1_type 41 191 -19 2285 104 3 3 chr12 6455938 6456246 -137826243 + AluSg SINE Alu 1 308 -2 327 71 0 0 chr12 6456336 6456378 -137826111 + Alu SINE Alu 1 42 -260 2142 123 7 0 chr12 6456603 6456896 -137825593 + AluSx SINE Alu 1 295 -17 2403 82 7 0 chr12 6456898 6457204 -137825285 + AluY SINE Alu 1 308 -3 1610 135 14 0 chr12 6457207 6457489 -137825000 + L1 LINE L1 4516 4801 -1345 2389 70 3 3 chr12 6457489 6457776 -137824713 + AluY SINE Alu 1 287 -24 240 200 0 0 chr12 6457776 6457826 -137824663 + (TA)n Simple_repeat Simple_repeat 1 50 0 229 333 0 0 chr12 6457867 6457957 -137824532 + L1MC4 LINE L1 6614 6703 -1339 189 0 0 0 chr12 6457989 6458010 -137824479 + (CA)n Simple_repeat Simple_repeat 2 22 0 4624 162 24 29 chr12 6458010 6458850 -137823639 + L1PB4 LINE L1 4780 5620 -536 2266 86 0 36 chr12 6458850 6459154 -137823335 + AluSg SINE Alu 2 294 -16 4624 162 24 29 chr12 6459154 6459680 -137822809 + L1PB4 LINE L1 5620 6147 -9 2199 107 3 27 chr12 6459680 6459979 -137822510 - AluSx SINE Alu -20 292 1 407 217 0 0 chr12 6459979 6460004 -137822485 + L1MA4A LINE L1 6279 6303 0 2794 136 8 104 chr12 6460133 6460198 -137822291 + L1MB3 LINE L1 5602 5672 -511 2289 92 0 26 chr12 6460198 6460503 -137821986 + AluSc SINE Alu 1 297 -12 2794 136 8 104 chr12 6460503 6461035 -137821454 + L1MB3 LINE L1 5672 6135 -48 2390 94 0 3 chr12 6461035 6461343 -137821146 + AluSq SINE Alu 1 307 -6 2794 136 8 104 chr12 6461343 6461386 -137821103 + L1MB3 LINE L1 6135 6181 -2 1883 210 58 20 chr12 6461399 6461884 -137820605 + L1ME1 LINE L1 5676 6334 0 356 280 123 74 chr12 6461885 6462114 -137820375 + L1M4 LINE L1 2204 2420 -3726 2383 80 0 0 chr12 6462114 6462401 -137820088 - AluY SINE Alu -24 287 1 356 280 123 74 chr12 6462401 6462455 -137820034 + L1M4 LINE L1 2420 2470 -3676 2241 136 0 0 chr12 6462455 6462765 -137819724 + AluSx SINE Alu 1 310 -2 356 280 123 74 chr12 6462765 6462778 -137819711 + L1M4 LINE L1 2470 2481 -3665 297 0 0 0 chr12 6462778 6462811 -137819678 + (CA)n Simple_repeat Simple_repeat 2 34 0 356 280 123 74 chr12 6462811 6463143 -137819346 + L1M4 LINE L1 2481 2877 -3269 2543 67 0 0 chr12 6463143 6463443 -137819046 + AluY SINE Alu 1 300 -11 356 280 123 74 chr12 6463443 6463543 -137818946 + L1M4 LINE L1 2877 2971 -3175 594 235 35 0 chr12 6463546 6463661 -137818828 + FLAM_A SINE Alu 1 119 -14 310 251 35 0 chr12 6463678 6463773 -137818716 - L1MCa LINE L1 -1349 6973 1995 279 284 0 11 chr12 6463775 6463864 -137818625 + L1M4 LINE L1 2951 3038 -3108 2408 88 0 0 chr12 6464097 6464393 -137818096 - AluY SINE Alu -15 296 1 632 260 112 0 chr12 6465130 6465299 -137817190 + MIR3 SINE MIR 4 191 -17 180 111 0 0 chr12 6465807 6465834 -137816655 + (TTCA)n Simple_repeat Simple_repeat 3 29 0 1164 231 0 9 chr12 6465834 6466059 -137816430 - AluJb SINE Alu -30 282 60 2434 82 0 25 chr12 6466112 6466430 -137816059 + AluY SINE Alu 1 310 -1 221 304 25 13 chr12 6466461 6466540 -137815949 + MER5A DNA MER1_type 38 117 -72 439 69 28 0 chr12 6467252 6467324 -137815165 + (CA)n Simple_repeat Simple_repeat 1 74 0 2531 51 10 0 chr12 6467741 6468036 -137814453 - AluY SINE Alu -12 299 2 250 222 0 37 chr12 6469045 6469099 -137813390 - MIR SINE MIR -159 103 52 1844 171 17 7 chr12 6469484 6469782 -137812707 - AluJo SINE Alu -11 301 1 545 282 141 0 chr12 6469861 6470088 -137812401 + MER112 DNA MER1_type 2 260 0 198 212 0 0 chr12 6470093 6470126 -137812363 - MIR SINE MIR -62 146 114 816 186 129 0 chr12 6470134 6470328 -137812161 - MER20 DNA MER1_type 0 219 1 225 291 46 80 chr12 6471996 6472020 -137810469 - MIR3 SINE MIR -62 146 123 1942 64 4 32 chr12 6472020 6472271 -137810218 + AluSp SINE Alu 44 287 -26 225 291 46 80 chr12 6472271 6472397 -137810092 - MIR3 SINE MIR -85 123 1 2358 98 7 0 chr12 6472820 6473127 -137809362 - AluSx SINE Alu 0 312 4 575 251 117 6 chr12 6473676 6473839 -137808650 + MER5A DNA MER1_type 9 189 0 2365 80 13 13 chr12 6474007 6474306 -137808183 + AluSx SINE Alu 1 299 -13 633 155 0 0 chr12 6474647 6474750 -137807739 + MER31B LTR ERV1 1 103 -363 2234 88 64 10 chr12 6474750 6475046 -137807443 - AluSx SINE Alu 0 312 1 187 385 13 0 chr12 6475047 6475125 -137807364 + MIR SINE MIR 63 141 -67 629 275 75 33 chr12 6476018 6476092 -137806397 - L1ME4a LINE L1 0 6121 6052 2347 113 0 0 chr12 6476092 6476402 -137806087 + AluSx SINE Alu 1 310 -2 629 275 75 33 chr12 6476402 6476752 -137805737 - L1ME4a LINE L1 -69 6052 5679 389 350 89 17 chr12 6477129 6477309 -137805180 + MIR3 SINE MIR 16 208 0 334 348 58 22 chr12 6478090 6478228 -137804261 + L2 LINE L2 3122 3264 -8 369 0 0 0 chr12 6479744 6479785 -137802704 + (CA)n Simple_repeat Simple_repeat 2 42 0 2468 50 0 0 chr12 6480157 6480465 -137802024 + AluY SINE Alu 1 308 0 554 330 68 16 chr12 6480501 6480868 -137801621 + L1ME3A LINE L1 27 412 -5707 2291 118 0 3 chr12 6480936 6481242 -137801247 - AluSg SINE Alu -5 305 1 252 232 185 40 chr12 6481268 6481419 -137801070 + L1ME3A LINE L1 665 837 -5282 889 165 0 0 chr12 6481428 6481555 -137800934 + FLAM_C SINE Alu 1 127 -16 1896 104 8 0 chr12 6481587 6481837 -137800652 + AluSc SINE Alu 51 302 -7 1709 172 20 30 chr12 6481866 6482169 -137800320 + AluJo SINE Alu 1 300 -12 232 248 109 10 chr12 6482237 6482295 -137800194 + L1ME3A LINE L1 1005 1056 -5063 2159 149 0 0 chr12 6482295 6482604 -137799885 + AluSx SINE Alu 1 309 -3 232 248 109 10 chr12 6482604 6482646 -137799843 + L1ME3A LINE L1 1056 1115 -5004 1011 250 69 12 chr12 6482695 6483015 -137799474 - LTR16C LTR ERVL 0 491 154 189 0 0 0 chr12 6483144 6483165 -137799324 + (T)n Simple_repeat Simple_repeat 1 21 0 1905 147 13 33 chr12 6483243 6483549 -137798940 - AluJb SINE Alu -12 300 1 345 293 101 35 chr12 6483970 6484287 -137798202 + L1ME3A LINE L1 2125 2462 -3667 400 259 47 86 chr12 6484437 6484487 -137798002 + L1ME3A LINE L1 4014 4064 -2065 1523 78 5 15 chr12 6484487 6484692 -137797797 + AluSc SINE Alu 1 203 -106 400 259 47 86 chr12 6484692 6484706 -137797783 + L1ME3A LINE L1 4064 4077 -2052 2505 68 3 3 chr12 6484706 6485015 -137797474 - AluY SINE Alu -2 309 1 400 259 47 86 chr12 6485015 6485181 -137797308 + L1ME3A LINE L1 4077 4236 -1893 490 249 75 30 chr12 6485293 6485317 -137797172 + L1ME3A LINE L1 4391 4412 -1717 2129 114 47 3 chr12 6485317 6485616 -137796873 + AluSx SINE Alu 1 312 0 490 249 75 30 chr12 6485616 6485856 -137796633 + L1ME3A LINE L1 4412 4667 -1462 1246 54 0 7 chr12 6485857 6486006 -137796483 + AluY SINE Alu 154 301 -10 2209 90 7 0 chr12 6486029 6486319 -137796170 + AluSp SINE Alu 1 292 -21 2401 80 13 0 chr12 6486320 6486620 -137795869 + AluY SINE Alu 1 304 -7 1019 119 44 6 chr12 6486714 6486874 -137795615 + AluSx SINE Alu 1 166 -146 8030 124 127 32 chr12 6486874 6488423 -137794066 + pTR5 LTR ERV1 743 2438 0 817 149 0 35 chr12 6488428 6488569 -137793920 + AluSp/q SINE Alu 165 300 -13 550 281 93 24 chr12 6488572 6489073 -137793416 + L1ME3A LINE L1 5369 5939 -214 1803 178 0 13 chr12 6489111 6489409 -137793080 + AluJb SINE Alu 11 304 -8 313 266 53 35 chr12 6489564 6489677 -137792812 + L1MC4 LINE L1 7926 8040 -2 374 253 138 23 chr12 6489709 6489883 -137792606 - L1ME LINE L1 -395 5726 5533 2264 60 42 7 chr12 6489948 6490232 -137792257 + AluY SINE Alu 1 294 -17 232 292 101 0 chr12 6490233 6490401 -137792088 - L1P4 LINE L1 -727 5438 5254 2299 121 0 3 chr12 6490525 6490838 -137791651 - AluSx SINE Alu 0 312 1 186 310 0 17 chr12 6491434 6491492 -137790997 - L2 LINE L2 -18 3254 3198 1217 221 79 79 chr12 6491512 6491824 -137790665 - MLT1C LTR MaLR -6 461 150 2178 132 7 0 chr12 6491824 6492128 -137790361 - AluSx SINE Alu -6 306 1 1870 133 10 58 chr12 6492130 6492439 -137790050 - AluSx SINE Alu -18 294 1 1217 221 79 79 chr12 6492439 6492579 -137789910 - MLT1C LTR MaLR -317 150 6 544 284 59 6 chr12 6492584 6492753 -137789736 - MIR SINE MIR -80 182 5 2266 90 3 20 chr12 6492858 6493158 -137789331 - AluY SINE Alu -16 295 1 342 277 92 31 chr12 6493170 6493300 -137789189 + L2 LINE L2 3167 3304 -9 563 266 25 61 chr12 6493626 6493710 -137788779 - L1ME LINE L1 -309 5812 5727 2629 59 0 0 chr12 6493710 6494015 -137788474 - AluY SINE Alu -6 305 1 563 266 25 61 chr12 6494015 6494208 -137788281 - L1ME LINE L1 -394 5727 5545 2039 159 124 28 chr12 6494640 6495098 -137787391 + MLT1D LTR MaLR 4 505 0 310 246 94 0 chr12 6495901 6496046 -137786443 + L1M4 LINE L1 2425 2620 -3526 988 192 0 6 chr12 6496048 6496215 -137786274 + AluJo SINE Alu 83 248 -64 1076 206 38 8 chr12 6496215 6496453 -137786036 - MER66A LTR ERV1 -7 471 227 3668 165 116 30 chr12 6496454 6497839 -137784650 + pTR5 LTR ERV1 741 2606 0 753 130 17 197 chr12 6497844 6497991 -137784498 - MER66A LTR ERV1 -256 222 133 2027 134 0 0 chr12 6497991 6498268 -137784221 - AluSx SINE Alu -35 277 1 753 130 17 197 chr12 6498268 6498359 -137784130 - MER66A LTR ERV1 -345 133 27 353 153 0 0 chr12 6498366 6498425 -137784064 + AluJo SINE Alu 238 296 -6 2130 112 0 30 chr12 6498431 6498736 -137783753 + AluSx SINE Alu 6 301 -11 277 234 26 0 chr12 6498751 6498828 -137783661 + L1MC/D LINE L1 5629 5707 -652 2062 66 96 0 chr12 6498829 6499101 -137783388 - AluY SINE Alu -13 298 1 1453 182 29 26 chr12 6499138 6499451 -137783038 + LOR1b LTR ERV1 70 383 -78 852 269 10 17 chr12 6499721 6500019 -137782470 + AluSx SINE Alu 17 312 0 232 292 101 0 chr12 6500142 6500310 -137782179 + L1P4 LINE L1 5254 5438 -727 1714 151 42 11 chr12 6500311 6500596 -137781893 - AluY SINE Alu -17 294 1 293 252 67 34 chr12 6500690 6500809 -137781680 + L1ME LINE L1 5577 5699 -422 1846 142 14 35 chr12 6501179 6501468 -137781021 - AluJb SINE Alu -29 283 1 420 279 114 67 chr12 6501911 6502226 -137780263 + L1 LINE L1 2164 2493 -3653 281 256 67 0 chr12 6502302 6502392 -137780097 - MLT1J LTR MaLR -60 451 356 227 235 0 44 chr12 6502795 6502863 -137779626 + L1MEd LINE L1 330 394 -5725 2231 87 11 0 chr12 6502875 6503161 -137779328 + AluY SINE Alu 1 289 -22 35 27 0 0 chr12 6503348 6503385 -137779104 + GC_rich Low_complexity Low_complexity 1 37 0 272 134 34 34 chr12 6503441 6503560 -137778929 + (TTG)n Simple_repeat Simple_repeat 2 120 0 1442 142 0 0 chr12 6503715 6503920 -137778569 + AluSq SINE Alu 107 311 -2 311 218 0 0 chr12 6503921 6503976 -137778513 - L1MC4 LINE L1 -221 7821 7767 2577 59 0 0 chr12 6503976 6504279 -137778210 + AluY SINE Alu 1 303 -8 760 138 144 28 chr12 6504280 6504461 -137778028 + L1MD1 LINE L1 5828 6029 -213 318 231 13 0 chr12 6504461 6504539 -137777950 + LOR1a LTR ERV1 1 79 -418 2555 45 3 3 chr12 6504551 6504859 -137777630 - AluY SINE Alu -3 308 1 1570 164 23 26 chr12 6504896 6505206 -137777283 + LOR1b LTR ERV1 70 378 -83 2020 125 7 0 chr12 6505206 6505493 -137776996 + AluSx SINE Alu 1 289 -23 774 294 33 82 chr12 6505695 6506147 -137776342 - L2 LINE L2 -32 3240 2811 3274 129 66 15 chr12 6506298 6506497 -137775992 + MER41C LTR ERV1 1 188 -366 2319 104 3 0 chr12 6506497 6506794 -137775695 - AluSg SINE Alu -12 298 1 3274 129 66 15 chr12 6506794 6507121 -137775368 + MER41C LTR ERV1 188 554 0 206 295 53 11 chr12 6507206 6507301 -137775188 - MIR3 SINE MIR -102 106 8 183 286 0 95 chr12 6507371 6507455 -137775034 - MIR3 SINE MIR -21 187 112 2339 102 3 0 chr12 6508116 6508421 -137774068 + AluSx SINE Alu 1 306 -6 2518 68 0 10 chr12 6508541 6508850 -137773639 - AluY SINE Alu -5 306 1 397 217 42 17 chr12 6509063 6509183 -137773306 + Charlie8 DNA MER1_type 349 471 -1946 657 242 92 35 chr12 6509205 6509569 -137772920 - MLT1F LTR MaLR -117 425 1 641 288 50 68 chr12 6509630 6510048 -137772441 + L1ME4a LINE L1 2320 2744 -3402 2308 62 0 4 chr12 6510048 6510323 -137772166 + AluY SINE Alu 1 274 -37 261 75 0 0 chr12 6510327 6510367 -137772122 + (CAAAA)n Simple_repeat Simple_repeat 2 41 0 641 288 50 68 chr12 6510367 6510561 -137771928 + L1ME4a LINE L1 2747 2926 -3220 2545 59 0 0 chr12 6510692 6510981 -137771508 - AluY SINE Alu -20 291 3 2043 139 3 0 chr12 6511187 6511489 -137771000 - AluSg SINE Alu -7 303 1 577 271 65 13 chr12 6511625 6511780 -137770709 - MLT1J LTR MaLR -348 163 1 1617 276 86 39 chr12 6511811 6512342 -137770147 + L1ME4a LINE L1 3644 4149 -1997 2265 60 57 7 chr12 6512342 6512623 -137769866 + AluY SINE Alu 1 295 -16 1617 276 86 39 chr12 6512623 6513307 -137769182 + L1ME4a LINE L1 4149 4916 -1230 300 256 211 65 chr12 6513322 6513521 -137768968 + L1ME4a LINE L1 5521 5748 -373 2248 90 4 0 chr12 6513599 6513877 -137768612 - AluSq SINE Alu -10 303 25 325 331 44 44 chr12 6513925 6514106 -137768383 + L1ME3A LINE L1 5963 6143 -27 2470 67 0 7 chr12 6514676 6514976 -137767513 + AluSc SINE Alu 1 298 -11 2205 79 10 10 chr12 6515360 6515665 -137766824 - AluSq SINE Alu -8 305 1 1563 171 7 7 chr12 6515961 6516242 -137766247 - AluJb SINE Alu -30 282 2 480 332 46 37 chr12 6516260 6516501 -137765988 + L1ME4a LINE L1 5775 6017 -104 352 266 141 8 chr12 6516504 6516632 -137765857 - MER5A DNA MER1_type -3 186 42 1718 214 37 8 chr12 6516632 6517033 -137765456 - MER63B DNA MER1_type -23 413 1 1461 189 14 21 chr12 6517102 6517393 -137765096 - L1MA5 LINE L1 0 6300 6012 494 287 97 35 chr12 6518289 6518578 -137763911 - L2 LINE L2 -7 3306 3000 5992 141 240 19 chr12 6518578 6519959 -137762530 + pTR5 LTR ERV1 753 2438 0 1102 254 56 25 chr12 6519986 6520450 -137762039 - L2 LINE L2 -350 2964 2437 873 237 102 102 chr12 6520887 6521308 -137761181 - MLT1J LTR MaLR -60 451 28 1631 174 7 13 chr12 6521308 6521607 -137760882 + AluJb SINE Alu 1 297 -15 873 237 102 102 chr12 6521607 6521636 -137760853 - MLT1J LTR MaLR -482 29 1 961 88 7 7 chr12 6521720 6521856 -137760633 - MER85 DNA T2_type -3 136 1 422 311 84 6 chr12 6521914 6522081 -137760408 - MIR SINE MIR -67 195 16 2312 84 0 0 chr12 6522414 6522713 -137759776 - AluY SINE Alu -12 299 1 221 310 17 0 chr12 6523088 6523146 -137759343 - MIR3 SINE MIR -1 207 149 536 229 95 50 chr12 6523243 6523422 -137759067 + MIR SINE MIR 13 199 -63 807 154 22 29 chr12 6523423 6523559 -137758930 + AluJo SINE Alu 2 136 -176 21 0 0 0 chr12 6523559 6523580 -137758909 + AT_rich Low_complexity Low_complexity 1 21 0 1752 117 4 0 chr12 6523580 6523836 -137758653 + AluY SINE Alu 37 293 -18 2203 92 7 3 chr12 6523838 6524144 -137758345 + AluSc SINE Alu 1 307 -2 1758 109 143 4 chr12 6524183 6524480 -137758009 - AluSq SINE Alu 0 334 1 3435 204 21 20 chr12 6524484 6525084 -137757405 + MER82 DNA MER2_type 1 604 -49 2334 81 0 7 chr12 6525084 6525394 -137757095 - AluY SINE Alu -3 308 1 3435 204 21 20 chr12 6525394 6525445 -137757044 + MER82 DNA MER2_type 604 653 0 219 269 0 0 chr12 6525446 6525498 -137756991 + MIR SINE MIR 198 249 -13 412 315 63 0 chr12 6525499 6525642 -137756847 - MIR SINE MIR -63 199 48 2387 83 0 3 chr12 6525835 6526147 -137756342 + AluY SINE Alu 1 311 0 589 256 108 5 chr12 6526689 6526884 -137755605 + MER58C DNA MER1_type 1 215 0 215 348 36 18 chr12 6526924 6527036 -137755453 + MIR SINE MIR 34 147 -61 187 270 130 78 chr12 6527210 6527325 -137755164 - MIR SINE MIR -114 148 28 2144 96 3 0 chr12 6527471 6527753 -137754736 - AluSq SINE Alu -30 283 1 2296 94 7 0 chr12 6528859 6529168 -137753321 - AluSx SINE Alu -1 311 1 847 200 141 11 chr12 6529206 6529726 -137752763 + L1MC4 LINE L1 7177 7694 -91 2142 104 7 10 chr12 6529726 6530033 -137752456 + AluSx SINE Alu 1 306 -6 847 200 141 11 chr12 6530033 6530139 -137752350 + L1MC4 LINE L1 7694 7785 0 239 196 11 120 chr12 6530213 6530245 -137752244 + MIR SINE MIR 2 36 -226 2513 40 0 3 chr12 6530245 6530545 -137751944 + AluY SINE Alu 1 299 -12 239 196 11 120 chr12 6530545 6530604 -137751885 + MIR SINE MIR 36 83 -179 373 316 9 9 chr12 6531383 6531497 -137750992 + MIR SINE MIR 24 137 -71 308 258 34 11 chr12 6531777 6531866 -137750623 - MIR SINE MIR -84 124 34 184 280 119 59 chr12 6532025 6532143 -137750346 - L2 LINE L2 0 3272 3148 2077 110 69 39 chr12 6532189 6532553 -137749936 + THE1C LTR MaLR 1 375 0 229 292 62 31 chr12 6533142 6533238 -137749251 - MLT1K LTR MaLR -461 127 29 463 220 0 23 chr12 6533529 6533661 -137748828 + L1MC4a LINE L1 4926 5054 -1092 25 51 0 0 chr12 6533738 6533777 -137748712 + AT_rich Low_complexity Low_complexity 1 39 0 1240 248 177 18 chr12 6533857 6533892 -137748597 + L1MC4a LINE L1 5258 5286 -2522 2093 128 3 0 chr12 6533892 6534189 -137748300 + AluSx SINE Alu 1 298 -14 1240 248 177 18 chr12 6534189 6534308 -137748181 + L1MC4a LINE L1 5286 5385 -2423 2078 100 0 32 chr12 6534308 6534618 -137747871 + AluY SINE Alu 1 300 -11 1240 248 177 18 chr12 6534618 6535068 -137747421 + L1MC4a LINE L1 5385 5959 -1849 2143 73 0 4 chr12 6535069 6535343 -137747146 + AluY SINE Alu 1 273 -38 375 75 0 0 chr12 6535343 6535396 -137747093 + Alu SINE Alu 243 295 -7 1673 164 13 41 chr12 6535614 6535755 -137746734 + AluJb SINE Alu 1 144 -168 2343 46 0 36 chr12 6535755 6536058 -137746431 + AluY SINE Alu 1 292 -19 1673 164 13 41 chr12 6536058 6536234 -137746255 + AluJb SINE Alu 144 309 -3 309 397 21 52 chr12 6536435 6536629 -137745860 + L1MC4a LINE L1 6414 6601 -1207 1020 76 15 0 chr12 6536828 6536959 -137745530 - AluSq/x SINE Alu -180 133 1 373 305 178 9 chr12 6537171 6537384 -137745105 - LTR33 LTR ERVL -115 406 158 421 299 55 83 chr12 6537642 6538027 -137744462 + L2 LINE L2 2899 3272 0 960 212 92 39 chr12 6538795 6539078 -137743411 - MLT1C LTR MaLR 0 467 170 1055 194 70 0 chr12 6539081 6539323 -137743166 - L1MB3 LINE L1 -65 6118 5860 829 209 5 31 chr12 6539331 6539522 -137742967 - MLT1C LTR MaLR -273 194 9 458 333 96 8 chr12 6539954 6540351 -137742138 - L2 LINE L2 -2 3311 2880 751 170 0 9 chr12 6540354 6540821 -137741668 + (TG)n Simple_repeat Simple_repeat 1 462 0 2193 104 7 0 chr12 6542100 6542409 -137740080 + AluSq SINE Alu 1 311 -2 406 265 197 0 chr12 6542487 6542634 -137739855 + L3 LINE CR1 1263 1438 -139 902 237 47 5 chr12 6543105 6543320 -137739169 - MIR SINE MIR -14 248 25 2064 184 78 23 chr12 6543393 6543865 -137738624 - MLT1D LTR MaLR -7 498 1 1395 130 113 45 chr12 6543883 6544175 -137738314 + AluSx SINE Alu 1 312 0 1054 230 41 70 chr12 6544380 6544596 -137737893 - L1MC5 LINE L1 -55 7906 7706 2542 42 0 3 chr12 6544596 6544906 -137737583 + AluY SINE Alu 1 309 -2 1054 230 41 70 chr12 6544906 6545102 -137737387 - L1MC5 LINE L1 -255 7706 7506 22 35 0 0 chr12 6545177 6545206 -137737283 + AT_rich Low_complexity Low_complexity 1 29 0 224 360 13 0 chr12 6545628 6545703 -137736786 + MIR SINE MIR 32 107 -101 1222 179 112 13 chr12 6545983 6546060 -137736429 + L1MD3 LINE L1 7653 7721 -274 2044 116 10 7 chr12 6546060 6546370 -137736119 + AluSx SINE Alu 1 311 -1 1222 179 112 13 chr12 6546370 6546604 -137735885 + L1MD3 LINE L1 7721 7995 0 433 212 71 0 chr12 6546613 6546712 -137735777 + AluSg/x SINE Alu 207 312 0 274 103 0 52 chr12 6546712 6546770 -137735719 + (GGAA)n Simple_repeat Simple_repeat 1 55 0 1889 163 0 0 chr12 6546815 6547115 -137735374 + AluJb SINE Alu 1 300 -12 208 214 89 0 chr12 6547849 6547905 -137734584 + L2 LINE L2 3203 3263 -9 303 308 57 58 chr12 6548085 6548295 -137734194 - MIR SINE MIR -50 212 3 529 249 194 15 chr12 6548767 6548968 -137733521 + MIR SINE MIR 23 259 -3 895 160 0 0 chr12 6549043 6549187 -137733302 - AluSg/x SINE Alu -20 292 149 696 106 53 9 chr12 6549187 6549300 -137733189 - LTR5 LTR ERVK 0 969 852 4793 127 184 71 chr12 6549303 6550708 -137731781 - pTR5 LTR ERV1 0 2438 739 6064 62 82 1 chr12 6550708 6551498 -137730991 - LTR5 LTR ERVK -115 854 1 1125 108 13 0 chr12 6551519 6551677 -137730812 - AluSc SINE Alu -18 291 132 2481 56 0 0 chr12 6551677 6551980 -137730509 - AluY SINE Alu -8 303 1 487 193 119 51 chr12 6552355 6552531 -137729958 - L2 LINE L2 -1 3312 3125 180 321 19 0 chr12 6553245 6553298 -137729191 + MIR SINE MIR 30 83 -125 1377 175 144 12 chr12 6553532 6553914 -137728575 - MLT1D LTR MaLR -8 497 15 1842 117 3 73 chr12 6553926 6554078 -137728411 + AluSx SINE Alu 1 121 -191 2240 88 0 0 chr12 6554078 6554363 -137728126 + AluSg SINE Alu 8 292 -18 1842 117 3 73 chr12 6554363 6554526 -137727963 + AluSx SINE Alu 121 294 -18 242 335 102 28 chr12 6554672 6554926 -137727563 - L2 LINE L2 -6 3266 2994 365 271 90 36 chr12 6555398 6555444 -137727045 - MIR3 SINE MIR -12 196 154 2414 123 121 139 chr12 6555444 6555960 -137726529 - MER4A LTR ERV1 0 664 140 2343 60 0 3 chr12 6555960 6556260 -137726229 - AluY SINE Alu -8 303 5 2414 123 121 139 chr12 6556260 6556277 -137726212 - MER4A LTR ERV1 -524 140 124 2278 84 0 0 chr12 6556277 6556576 -137725913 - AluSc SINE Alu -10 299 1 2414 123 121 139 chr12 6556576 6556717 -137725772 - MER4A LTR ERV1 -540 124 1 365 271 90 36 chr12 6556717 6556836 -137725653 - MIR3 SINE MIR -54 154 22 220 336 37 0 chr12 6556936 6557043 -137725446 - MIR SINE MIR -3 259 149 206 275 108 62 chr12 6557332 6557590 -137724899 + L2 LINE L2 2844 3113 -159 268 294 123 12 chr12 6557870 6558033 -137724456 + L2 LINE L2 2626 2806 -508 310 293 106 8 chr12 6558394 6558517 -137723972 + L1ME4a LINE L1 5982 6116 -5 208 95 12 83 chr12 6559503 6559587 -137722902 + (CGGGGG)n Simple_repeat Simple_repeat 4 81 0 1696 162 17 7 chr12 6561028 6561330 -137721159 + AluJb SINE Alu 1 305 -7 353 318 101 14 chr12 6562045 6562193 -137720296 - MIR3 SINE MIR -28 180 20 301 309 0 40 chr12 6562404 6562530 -137719959 - MIR SINE MIR -112 150 30 664 244 44 11 chr12 6563307 6563487 -137719002 + MIR3 SINE MIR 12 197 -11 543 166 131 9 chr12 6563555 6563674 -137718815 + L1PB4 LINE L1 6034 6165 -1 222 311 113 9 chr12 6563889 6563995 -137718494 + MIR SINE MIR 113 229 -33 181 28 0 83 chr12 6564869 6564905 -137717584 + (TTTG)n Simple_repeat Simple_repeat 2 34 0 1845 153 10 32 chr12 6565482 6565795 -137716694 - AluJb SINE Alu -6 306 1 1591 167 85 4 chr12 6566172 6566453 -137716036 - AluJo SINE Alu -8 304 1 2448 97 3 0 chr12 6567214 6567522 -137714967 + AluSp SINE Alu 1 309 -4 2208 97 28 0 chr12 6567830 6568118 -137714371 - AluSp SINE Alu 0 313 18 2249 99 31 0 chr12 6568239 6568531 -137713958 - AluSx SINE Alu -11 301 1 2466 100 0 0 chr12 6568947 6569256 -137713233 - AluSx SINE Alu -3 309 1 615 294 38 47 chr12 6570003 6570107 -137712382 + MIR SINE MIR 1 104 -158 2326 87 3 3 chr12 6570107 6570407 -137712082 - AluSg SINE Alu -10 300 1 615 294 38 47 chr12 6570407 6570537 -137711952 + MIR SINE MIR 104 233 -29 298 268 18 45 chr12 6571475 6571587 -137710902 + MIR3 SINE MIR 63 171 -37 366 326 21 0 chr12 6572276 6572420 -137710069 + MIR SINE MIR 95 241 -21 200 176 0 0 chr12 6572429 6572463 -137710026 + (CTG)n Simple_repeat Simple_repeat 1 34 0 327 273 61 0 chr12 6573373 6573472 -137709017 + MIR SINE MIR 51 155 -107 1791 130 14 14 chr12 6573616 6573893 -137708596 - AluJb SINE Alu -6 306 30 511 217 97 23 chr12 6574634 6574809 -137707680 - MER5A DNA MER1_type -1 188 1 375 330 5 60 chr12 6576211 6576396 -137706093 - MIR SINE MIR -41 221 47 1821 157 7 30 chr12 6576512 6576811 -137705678 + AluJb SINE Alu 1 292 -20 2112 135 0 10 chr12 6577214 6577511 -137704978 + AluJb SINE Alu 1 294 -18 2459 94 0 0 chr12 6578269 6578577 -137703912 - AluSx SINE Alu -4 308 1 2539 77 0 0 chr12 6578746 6579056 -137703433 - AluY SINE Alu -1 310 1 1765 187 29 8 chr12 6579998 6580383 -137702106 - L1MD3 LINE L1 -15 7980 7588 1895 128 0 64 chr12 6580965 6581277 -137701212 + AluJo SINE Alu 1 292 -20 2553 60 0 0 chr12 6582533 6582832 -137699657 - AluY SINE Alu -12 299 1 434 245 63 14 chr12 6584321 6584464 -137698025 - L1ME3A LINE L1 -241 5929 5780 2413 93 3 0 chr12 6586457 6586769 -137695720 - AluSp SINE Alu 0 313 1 476 306 87 15 chr12 6586776 6586972 -137695517 - MIR SINE MIR -7 255 46 231 94 0 0 chr12 6587539 6587571 -137694918 - Alu SINE Alu -227 75 44 2040 103 0 25 chr12 6587571 6587853 -137694636 + AluSx SINE Alu 31 305 -7 197 226 19 0 chr12 6588612 6588665 -137693824 + MIR SINE MIR 78 131 -77 590 211 16 16 chr12 6590547 6590675 -137691814 - MIR SINE MIR -59 203 76 531 259 8 15 chr12 6591145 6591276 -137691213 - MIR SINE MIR -58 150 21 661 120 19 0 chr12 6593619 6593727 -137688762 - HY1 scRNA scRNA -2 110 1 324 257 154 22 chr12 6593979 6594115 -137688374 - MIR SINE MIR -26 236 83 235 364 148 0 chr12 6595590 6595799 -137686690 - MIR SINE MIR -11 251 12 2379 95 16 3 chr12 6596240 6596546 -137685943 - AluSq SINE Alu -3 310 1 385 163 95 0 chr12 6596573 6596671 -137685818 + AluSg/x SINE Alu 208 299 -3 221 21 42 42 chr12 6597154 6597202 -137685287 + (TTTG)n Simple_repeat Simple_repeat 1 48 0 2530 67 3 0 chr12 6597617 6597914 -137684575 - AluSp SINE Alu -15 298 1 256 362 17 17 chr12 6597955 6598071 -137684418 - MIR SINE MIR -62 146 31 253 147 156 156 chr12 6598113 6598222 -137684267 + L2 LINE L2 3205 3313 0 509 219 0 49 chr12 6598227 6598350 -137684139 - MLT2F LTR ERVL 0 663 547 1996 136 3 10 chr12 6598438 6598739 -137683750 - AluJb SINE Alu -13 299 1 719 176 11 13 chr12 6598762 6598945 -137683544 - MLT2F LTR ERVL -434 229 2 2145 161 67 38 chr12 6599179 6599605 -137682884 + L1MB4 LINE L1 5689 6132 -48 1738 191 20 0 chr12 6599605 6599899 -137682590 + AluJb SINE Alu 1 300 -12 2145 161 67 38 chr12 6599899 6599950 -137682539 + L1MB4 LINE L1 6132 6180 0 2248 111 3 0 chr12 6600061 6600367 -137682122 - AluSx SINE Alu -5 307 1 402 313 117 65 chr12 6601534 6601725 -137680764 + L3 LINE CR1 455 635 -942 2347 89 0 13 chr12 6601725 6602029 -137680460 + AluSx SINE Alu 1 300 -12 2213 105 7 3 chr12 6602031 6602326 -137680163 + AluSc SINE Alu 1 296 -13 402 313 117 65 chr12 6602326 6602483 -137680006 + L3 LINE CR1 635 824 -753 313 224 80 124 chr12 6602659 6602762 -137679727 - MLT1J LTR MaLR -174 337 231 2327 103 0 3 chr12 6602762 6603063 -137679426 + AluY SINE Alu 1 300 -11 313 224 80 124 chr12 6603063 6603209 -137679280 - MLT1J LTR MaLR -280 231 99 185 304 45 45 chr12 6603271 6603383 -137679106 - MIR SINE MIR -65 143 32 684 323 166 28 chr12 6603427 6604071 -137678418 + L3 LINE CR1 793 1525 -52 3675 93 0 6 chr12 6604703 6605217 -137677272 - MER9 LTR ERVK 0 511 1 2323 104 3 0 chr12 6605299 6605597 -137676892 - AluSp SINE Alu -14 299 1 2513 67 0 0 chr12 6605599 6605898 -137676591 - AluY SINE Alu -7 304 6 2292 112 0 3 chr12 6606427 6606731 -137675758 - AluSx SINE Alu -7 305 3 187 118 59 0 chr12 6607116 6607150 -137675339 + MIR SINE MIR 117 152 -110 2361 118 0 0 chr12 6607165 6607471 -137675018 + AluY SINE Alu 1 306 -5 242 162 0 0 chr12 6607787 6607824 -137674665 + Alu SINE Alu 2 38 -264 2075 129 23 13 chr12 6607824 6608133 -137674356 - AluSx SINE Alu 0 312 1 645 256 97 13 chr12 6608889 6609187 -137673302 - LTR50 LTR ERVL 0 678 296 2223 122 0 0 chr12 6610326 6610620 -137671869 - AluSx SINE Alu -18 294 1 2571 73 0 0 chr12 6611074 6611377 -137671112 - AluY SINE Alu -8 303 1 1929 120 7 37 chr12 6611548 6611847 -137670642 - AluJb SINE Alu -22 290 1 1195 149 0 0 chr12 6612048 6612229 -137670260 + AluSg/x SINE Alu 130 310 -2 346 269 57 46 chr12 6612238 6612413 -137670076 - MLT1L LTR MaLR -365 250 74 438 228 0 20 chr12 6612548 6612649 -137669840 - L2 LINE L2 -2644 670 572 1945 130 56 11 chr12 6612897 6613182 -137669307 + AluSg SINE Alu 1 298 -12 384 228 99 0 chr12 6613350 6613451 -137669038 + MIR SINE MIR 35 145 -117 2287 101 13 0 chr12 6613455 6613762 -137668727 + AluSq SINE Alu 1 311 -2 465 253 95 13 chr12 6614048 6614206 -137668283 + L2 LINE L2 576 746 -2568 230 188 203 14 chr12 6614225 6614294 -137668195 + MER112 DNA MER1_type 5 86 -174 2349 112 0 3 chr12 6614306 6614618 -137667871 + AluY SINE Alu 1 311 0 547 267 158 0 chr12 6614625 6614709 -137667780 + MER112 DNA MER1_type 64 133 -127 201 74 0 0 chr12 6614709 6614736 -137667753 + (CTATT)n Simple_repeat Simple_repeat 4 30 0 547 267 158 0 chr12 6614736 6614816 -137667673 + MER112 DNA MER1_type 133 254 -6 400 186 0 0 chr12 6614903 6614973 -137667516 + FLAM_A SINE Alu 16 85 -57 228 246 0 0 chr12 6615011 6615068 -137667421 - L2 LINE L2 -1215 2099 2043 368 241 183 16 chr12 6615070 6615261 -137667228 + L2 LINE L2 834 1056 -2258 2303 95 0 0 chr12 6615261 6615545 -137666944 + AluSq SINE Alu 1 329 0 385 22 0 0 chr12 6615545 6615590 -137666899 + (TAA)n Simple_repeat Simple_repeat 2 180 0 418 224 39 83 chr12 6615597 6615622 -137666867 - L2 LINE L2 -1 3312 3287 2315 106 0 7 chr12 6615622 6615925 -137666564 + AluSx SINE Alu 1 301 -11 418 224 39 83 chr12 6615925 6616055 -137666434 - L2 LINE L2 -26 3287 3164 2517 90 3 0 chr12 6616056 6616368 -137666121 + AluSp SINE Alu 1 313 0 14039 114 36 36 chr12 6616405 6618768 -137663721 - Tigger1 DNA MER2_type 0 2418 52 2460 67 0 17 chr12 6618768 6619068 -137663421 + AluY SINE Alu 2 296 -15 14039 114 36 36 chr12 6619068 6619118 -137663371 - Tigger1 DNA MER2_type -2366 52 4 339 242 20 0 chr12 6619122 6619221 -137663268 - L2 LINE L2 -363 2951 2851 2058 148 7 0 chr12 6619222 6619526 -137662963 + AluJb SINE Alu 1 306 -6 207 0 0 0 chr12 6619527 6619550 -137662939 + (CA)n Simple_repeat Simple_repeat 2 24 0 327 238 0 0 chr12 6619555 6619618 -137662871 + L1MC4 LINE L1 6640 6702 -1340 1712 253 165 39 chr12 6619620 6619933 -137662556 - L2 LINE L2 -453 2861 2589 2506 54 3 3 chr12 6619933 6620230 -137662259 - AluY SINE Alu -14 297 1 1712 253 165 39 chr12 6620230 6620754 -137661735 - L2 LINE L2 -725 2589 1919 2379 95 0 0 chr12 6620755 6621050 -137661439 - AluSq SINE Alu -6 307 13 1270 84 0 0 chr12 6621063 6621217 -137661272 - AluSq SINE Alu -8 305 152 200 239 155 0 chr12 6622541 6622612 -137659877 + MIR SINE MIR 107 188 -74 1315 175 69 95 chr12 6622625 6622730 -137659759 + MLT2D LTR ERVL 3 109 -305 2241 97 26 26 chr12 6622730 6623041 -137659448 + AluSx SINE Alu 1 311 -1 1315 175 69 95 chr12 6623041 6623358 -137659131 + MLT2D LTR ERVL 109 414 0 195 344 33 0 chr12 6623746 6623836 -137658653 - MIR3 SINE MIR -29 179 87 184 388 30 8 chr12 6623875 6624009 -137658480 - MIR SINE MIR -55 153 17 240 233 0 0 chr12 6624358 6624401 -137658088 - L2 LINE L2 -259 3054 3012 338 213 33 57 chr12 6624466 6624588 -137657901 + MIR SINE MIR 25 143 -119 862 142 0 0 chr12 6624599 6624726 -137657763 + FLAM_C SINE Alu 15 141 -2 396 194 83 9 chr12 6624732 6624840 -137657649 + MIR SINE MIR 137 252 -10 2426 90 0 7 chr12 6624862 6625163 -137657326 + AluSg1 SINE Alu 1 299 -10 276 30 0 0 chr12 6625163 6625196 -137657293 + (TA)n Simple_repeat Simple_repeat 2 34 0 2156 141 3 0 chr12 6625202 6625500 -137656989 + AluSq SINE Alu 1 299 -14 1975 149 0 7 chr12 6625517 6625819 -137656670 + AluSx SINE Alu 1 300 -12 276 170 0 0 chr12 6626278 6626331 -137656158 + (CA)n Simple_repeat Simple_repeat 1 53 0 306 327 6 12 chr12 6626475 6626640 -137655849 + L1MC4a LINE L1 5872 6035 -1773 2307 111 0 7 chr12 6627010 6627316 -137655173 + AluSq SINE Alu 1 304 -9 823 164 57 0 chr12 6627323 6627463 -137655026 + FRAM SINE Alu 11 158 -18 54 29 0 0 chr12 6627504 6627572 -137654917 + AT_rich Low_complexity Low_complexity 1 68 0 216 0 0 0 chr12 6628352 6628376 -137654113 + (A)n Simple_repeat Simple_repeat 1 24 0 546 290 68 27 chr12 6628396 6628617 -137653872 + MIR SINE MIR 21 250 -12 2502 71 0 10 chr12 6628646 6628954 -137653535 - AluY SINE Alu -6 305 1 359 283 106 33 chr12 6629019 6629199 -137653290 - MLT1K LTR MaLR 0 588 396 204 186 0 0 chr12 6629238 6629297 -137653192 + T-rich Low_complexity Low_complexity 1 59 0 240 111 0 0 chr12 6629712 6629748 -137652741 + (TTTTC)n Simple_repeat Simple_repeat 2 37 0 304 39 0 0 chr12 6629749 6629800 -137652689 + AluSp/q SINE Alu 253 303 0 652 277 64 84 chr12 6629816 6630120 -137652369 - MLT1E LTR MaLR -149 444 135 2372 61 4 0 chr12 6630120 6630430 -137652059 - AluY SINE Alu 0 311 1 1818 175 3 3 chr12 6630432 6630717 -137651772 - AluJb SINE Alu -17 295 11 652 277 64 84 chr12 6630717 6630848 -137651641 - MLT1E LTR MaLR -459 134 14 803 219 112 85 chr12 6630848 6630938 -137651551 - L2 LINE L2 -520 2794 2708 2375 98 0 0 chr12 6630938 6631233 -137651256 - AluSc SINE Alu -14 295 1 803 219 112 85 chr12 6631233 6631259 -137651230 - L2 LINE L2 -606 2708 2684 2034 103 0 35 chr12 6631259 6631574 -137650915 + AluY SINE Alu 1 305 0 803 219 112 85 chr12 6631574 6631821 -137650668 - L2 LINE L2 -630 2684 2419 251 307 168 0 chr12 6631968 6632069 -137650420 - L2 LINE L2 -5 3267 3150 1354 154 82 82 chr12 6632336 6632511 -137649978 - AluJo SINE Alu -20 292 115 315 0 0 0 chr12 6632511 6632546 -137649943 + (TG)n Simple_repeat Simple_repeat 2 36 0 1354 154 82 82 chr12 6632546 6632662 -137649827 - AluJo SINE Alu -196 116 1 1054 237 101 29 chr12 6632689 6633174 -137649315 - LTR33 LTR ERVL -1 520 1 326 276 168 0 chr12 6634610 6634752 -137647737 - MIR SINE MIR -55 207 33 2017 112 0 58 chr12 6634813 6635126 -137647363 + AluSx SINE Alu 1 295 -17 419 261 62 15 chr12 6635680 6635810 -137646679 + MER5B DNA MER1_type 43 178 0 2328 95 0 3 chr12 6635964 6636260 -137646229 + AluSg SINE Alu 1 295 -15 696 267 23 28 chr12 6636542 6636759 -137645730 + MIR SINE MIR 22 237 -25 244 229 0 0 chr12 6636773 6636834 -137645655 + (TA)n Simple_repeat Simple_repeat 1 61 0 521 178 19 9 chr12 6636920 6637027 -137645462 - FLAM_A SINE Alu -15 127 20 1517 166 104 6 chr12 6637039 6637377 -137645112 - Tigger2a DNA MER2_type -63 371 1 284 246 0 0 chr12 6637390 6637447 -137645042 - MIR SINE MIR -9 253 197 22 35 0 0 chr12 6638021 6638050 -137644439 + GC_rich Low_complexity Low_complexity 1 29 0 1648 165 3 14 chr12 6638307 6638604 -137643885 - AluJb SINE Alu -15 297 4 223 323 152 0 chr12 6639329 6639428 -137643061 - MIR SINE MIR -69 193 80 259 205 128 0 chr12 6639635 6639713 -137642776 + L2 LINE L2 3225 3312 -1 185 176 0 0 chr12 6639886 6639920 -137642569 - L3b LINE CR1 -196 1387 1354 * 447 304 213 41 chr12 6639897 6640983 -137641506 + L2 LINE L2 397 1295 -2019 2131 125 13 0 chr12 6640983 6641286 -137641203 + AluSx SINE Alu 1 307 -5 447 304 213 41 chr12 6641286 6641842 -137640647 + L2 LINE L2 1295 2321 -993 22 56 0 0 chr12 6642015 6642051 -137640438 + AT_rich Low_complexity Low_complexity 1 36 0 2339 143 70 64 chr12 6642051 6642142 -137640347 + L1MB2 LINE L1 5652 5741 -430 1881 125 0 45 chr12 6642142 6642429 -137640060 + AluJo SINE Alu 5 278 -34 233 0 62 0 chr12 6642434 6642466 -137640023 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 2339 143 70 64 chr12 6642466 6642834 -137639655 + L1MB2 LINE L1 5744 6123 -48 2395 90 10 0 chr12 6642834 6643135 -137639354 + AluSp SINE Alu 1 304 -9 2339 143 70 64 chr12 6643135 6643185 -137639304 + L1MB2 LINE L1 6123 6171 0 660 132 61 0 chr12 6643223 6643337 -137639152 - AluSx SINE Alu -11 301 181 843 85 9 0 chr12 6643337 6643443 -137639046 - AluSx SINE Alu -205 107 1 228 333 31 0 chr12 6643444 6643540 -137638949 + L2 LINE L2 2725 2823 -491 224 341 41 0 chr12 6643762 6643885 -137638604 + L2 LINE L2 3142 3269 -3 434 311 106 6 chr12 6643918 6644079 -137638410 + MIR SINE MIR 36 212 -50 2030 152 10 0 chr12 6644892 6645194 -137637295 - AluJo SINE Alu -7 305 1 2328 58 44 31 chr12 6645914 6646208 -137636281 - AluSg SINE Alu -11 299 2 2438 65 0 29 chr12 6646484 6646793 -137635696 + AluY SINE Alu 1 300 -11 1513 198 88 0 chr12 6646807 6647080 -137635409 + AluJb SINE Alu 1 297 -15 1302 166 60 19 chr12 6647080 6647345 -137635144 - L1MB7 LINE L1 -171 6013 5738 990 137 0 0 chr12 6647356 6647495 -137634994 - AluJb SINE Alu -15 297 159 2614 171 37 27 chr12 6647496 6647790 -137634699 - L1M4 LINE L1 -394 5784 5495 2206 79 0 41 chr12 6647790 6648107 -137634382 - AluY SINE Alu -4 307 4 2614 171 37 27 chr12 6648107 6648325 -137634164 - L1M4 LINE L1 -683 5495 5281 2272 95 24 0 chr12 6648325 6648447 -137634042 + AluSx SINE Alu 1 119 -193 192 77 0 0 chr12 6648447 6648473 -137634016 + (CAA)n Simple_repeat Simple_repeat 2 27 0 2272 95 24 0 chr12 6648473 6648644 -137633845 + AluSx SINE Alu 119 301 -11 2614 171 37 27 chr12 6648644 6648866 -137633623 - L1M4 LINE L1 -897 5281 5050 1175 147 73 10 chr12 6648873 6649077 -137633412 - AluJb SINE Alu -9 303 87 1007 203 66 4 chr12 6649080 6649321 -137633168 - L1M4 LINE L1 -1092 5054 4799 2122 191 32 92 chr12 6650916 6651300 -137631189 - L1M4 LINE L1 -1332 4814 4486 2536 80 0 0 chr12 6651300 6651611 -137630878 + AluY SINE Alu 1 311 0 2122 191 32 92 chr12 6651611 6651902 -137630587 - L1M4 LINE L1 -1660 4486 4179 242 141 51 77 chr12 6652165 6652243 -137630246 + L1MB4 LINE L1 6105 6180 0 872 191 0 13 chr12 6652554 6652706 -137629783 - AluJb SINE Alu -22 290 141 2048 152 0 0 chr12 6652717 6653006 -137629483 - AluSx SINE Alu -14 298 10 2329 97 13 7 chr12 6653134 6653433 -137629056 + AluSx SINE Alu 1 301 -11 705 106 0 0 chr12 6653454 6653558 -137628931 + (GGAA)n Simple_repeat Simple_repeat 4 107 0 215 122 0 24 chr12 6653601 6653642 -137628847 + (GAAA)n Simple_repeat Simple_repeat 3 42 0 758 148 7 22 chr12 6653652 6653787 -137628702 + FLAM_C SINE Alu 1 133 0 260 287 107 24 chr12 6653799 6653982 -137628507 + MIR SINE MIR 19 212 -50 214 317 43 30 chr12 6654806 6654970 -137627519 + L2 LINE L2 2864 3029 -243 264 259 155 23 chr12 6654997 6655026 -137627463 - MLT1J LTR MaLR -24 487 463 2163 108 0 0 chr12 6655026 6655303 -137627186 + AluSx SINE Alu 1 277 -35 264 259 155 23 chr12 6655303 6655447 -137627042 - MLT1J LTR MaLR -48 463 291 1110 203 50 86 chr12 6655601 6655843 -137626646 + MER97a DNA MER1_type? 12 261 -633 2346 95 0 0 chr12 6655843 6656150 -137626339 + AluSx SINE Alu 1 307 0 1110 203 50 86 chr12 6656150 6656204 -137626285 + MER97a DNA MER1_type? 261 315 -579 2630 46 13 0 chr12 6656204 6656510 -137625979 + AluY SINE Alu 1 310 -1 1110 203 50 86 chr12 6656510 6656595 -137625894 + MER97a DNA MER1_type? 315 381 -513 2659 180 8 95 chr12 6656635 6656706 -137625783 + MER41D LTR ERV1 1 77 -480 757 153 15 0 chr12 6656706 6656837 -137625652 - FLAM_C SINE Alu 0 133 1 2659 180 8 95 chr12 6656837 6657375 -137625114 + MER41D LTR ERV1 77 557 0 536 182 65 140 chr12 6657384 6657524 -137624965 + MER97c DNA MER1_type? 468 588 -502 1702 118 0 0 chr12 6657524 6657752 -137624737 + AluSx SINE Alu 1 228 -84 536 182 65 140 chr12 6657752 6657825 -137624664 + MER97c DNA MER1_type? 588 665 -425 337 123 62 31 chr12 6657840 6657903 -137624586 + MER97a DNA MER1_type? 801 865 -29 391 162 15 0 chr12 6657903 6657971 -137624518 + AluS SINE Alu 1 69 -234 2030 70 46 0 chr12 6658151 6658436 -137624053 + L1PB1 LINE L1 5851 6148 -3 500 267 222 22 chr12 6658454 6658814 -137623675 + Charlie2b DNA MER1_type 312 743 -2039 1083 229 84 74 chr12 6658868 6658904 -137623585 + Charlie2b DNA MER1_type 833 867 -1915 2234 98 3 7 chr12 6658904 6659200 -137623289 + AluSg SINE Alu 1 295 -15 1083 229 84 74 chr12 6659200 6659365 -137623124 + Charlie2b DNA MER1_type 867 1029 -1753 2002 122 17 7 chr12 6659365 6659661 -137622828 - AluJb SINE Alu -8 304 6 1083 229 84 74 chr12 6659661 6659864 -137622625 + Charlie2b DNA MER1_type 1029 1242 -1540 698 241 89 21 chr12 6659953 6660144 -137622345 - MIR SINE MIR -25 237 34 1475 153 0 5 chr12 6660290 6660505 -137621984 + AluJb SINE Alu 85 298 -14 189 0 0 0 chr12 6660506 6660527 -137621962 + (TA)n Simple_repeat Simple_repeat 2 22 0 292 258 97 8 chr12 6660564 6660688 -137621801 + L1MC4 LINE L1 7908 8042 0 2131 115 3 3 chr12 6660856 6661144 -137621345 - AluSx SINE Alu -15 297 10 749 255 36 15 chr12 6661355 6661551 -137620938 - LTR16A LTR ERVL -174 276 77 313 161 0 161 chr12 6661561 6661603 -137620886 - MIR SINE MIR -115 147 126 2134 151 0 0 chr12 6661603 6661915 -137620574 + AluSx SINE Alu 1 312 0 313 161 0 161 chr12 6661915 6661965 -137620524 - MIR SINE MIR -136 126 70 966 258 141 21 chr12 6661990 6662374 -137620115 - MLT1H LTR MaLR -13 536 107 2341 102 0 13 chr12 6662889 6663204 -137619285 - AluY SINE Alu 0 311 1 718 287 61 4 chr12 6663815 6664045 -137618444 + MIR SINE MIR 5 247 -15 1794 156 7 7 chr12 6664054 6664342 -137618147 + AluJo SINE Alu 1 288 -24 198 0 0 0 chr12 6664342 6664364 -137618125 + (TTAA)n Simple_repeat Simple_repeat 1 22 0 2430 87 0 10 chr12 6664678 6664989 -137617500 + AluSc SINE Alu 1 308 -1 280 292 21 0 chr12 6665021 6665117 -137617372 + L2 LINE L2 2962 3059 -213 1051 157 0 0 chr12 6665236 6665395 -137617094 + AluJb SINE Alu 140 298 -14 346 267 103 0 chr12 6665636 6665752 -137616737 - MER117 DNA MER1_type -39 158 31 182 335 112 20 chr12 6666184 6666336 -137616153 - L2 LINE L2 -190 3082 2917 575 281 58 54 chr12 6666534 6666847 -137615642 + L2 LINE L2 2914 3227 -45 504 0 0 0 chr12 6668049 6668105 -137614384 + (CA)n Simple_repeat Simple_repeat 1 56 0 468 192 0 0 chr12 6668774 6668852 -137613637 + FLAM SINE Alu 41 118 -25 30 27 0 0 chr12 6668857 6668894 -137613595 + AT_rich Low_complexity Low_complexity 1 37 0 2347 93 0 0 chr12 6668952 6669262 -137613227 - AluSg SINE Alu 0 310 1 22 35 0 0 chr12 6669657 6669686 -137612803 + GC_rich Low_complexity Low_complexity 1 29 0 29 28 0 0 chr12 6670139 6670175 -137612314 + GC_rich Low_complexity Low_complexity 1 36 0 463 264 55 60 chr12 6670778 6670979 -137611510 - MER58 DNA MER1_type -107 234 35 2309 88 0 13 chr12 6673492 6673799 -137608690 + AluSq SINE Alu 1 303 -10 189 178 0 0 chr12 6674161 6674206 -137608283 + (CA)n Simple_repeat Simple_repeat 2 46 0 663 226 43 33 chr12 6674525 6674736 -137607753 + MIR SINE MIR 3 217 -45 2145 113 14 0 chr12 6678445 6678738 -137603751 + AluSx SINE Alu 9 305 -7 512 357 57 37 chr12 6678982 6679538 -137602951 - L2 LINE L2 -2 3270 2712 1319 218 40 58 chr12 6679588 6680034 -137602455 - MLT1C LTR MaLR -29 438 1 1860 168 0 7 chr12 6680290 6680587 -137601902 - AluJo SINE Alu -11 301 7 2350 34 41 3 chr12 6680828 6681119 -137601370 + AluY SINE Alu 1 302 -9 491 284 0 15 chr12 6681167 6681307 -137601182 + MIR SINE MIR 36 171 -67 1825 163 0 7 chr12 6681868 6682175 -137600314 + AluJo SINE Alu 1 305 -7 209 317 0 0 chr12 6683503 6683585 -137598904 + C-rich Low_complexity Low_complexity 1 82 0 213 39 0 0 chr12 6684438 6684464 -137598025 + (CCCCCT)n Simple_repeat Simple_repeat 3 28 0 491 247 29 12 chr12 6684531 6684717 -137597772 + MIR SINE MIR 30 216 -46 552 241 36 100 chr12 6685149 6685296 -137597193 + MIR SINE MIR 55 185 -77 2160 117 0 0 chr12 6685296 6685604 -137596885 + AluSg SINE Alu 1 308 -2 552 241 36 100 chr12 6685604 6685676 -137596813 + MIR SINE MIR 185 260 -2 218 404 94 9 chr12 6686266 6686479 -137596010 - L2 LINE L2 -7 3265 3035 1325 132 147 16 chr12 6687644 6687902 -137594587 + AluJo SINE Alu 1 292 -10 226 0 29 29 chr12 6688207 6688242 -137594247 + (CAAAA)n Simple_repeat Simple_repeat 2 36 0 22 35 0 0 chr12 6688598 6688627 -137593862 + GC_rich Low_complexity Low_complexity 1 29 0 254 333 0 10 chr12 6689214 6689310 -137593179 + (CTGGGG)n Simple_repeat Simple_repeat 1 95 0 182 114 0 29 chr12 6690034 6690069 -137592420 + (TGGA)n Simple_repeat Simple_repeat 2 35 0 317 287 118 47 chr12 6690402 6690594 -137591895 + MIR SINE MIR 11 216 -46 195 327 39 29 chr12 6690614 6690718 -137591771 - MIR SINE MIR -103 159 55 2294 92 16 0 chr12 6690997 6691301 -137591188 + AluSg SINE Alu 1 309 -1 421 282 72 67 chr12 6691322 6691430 -137591059 - MIR SINE MIR -32 230 119 1985 129 23 13 chr12 6691430 6691739 -137590750 + AluJo SINE Alu 1 312 0 421 282 72 67 chr12 6691739 6691839 -137590650 - MIR SINE MIR -143 119 21 481 299 85 6 chr12 6691912 6692076 -137590413 - MER104 DNA MER2_type 0 180 4 189 299 22 103 chr12 6693691 6693782 -137588707 + L2 LINE L2 3138 3208 -105 1644 167 25 7 chr12 6693782 6694058 -137588431 - AluJb SINE Alu -18 294 14 189 299 22 103 chr12 6694058 6694150 -137588339 + L2 LINE L2 3208 3306 -7 323 268 45 0 chr12 6694215 6694327 -137588162 + L1ME3A LINE L1 6049 6165 -5 214 333 103 0 chr12 6695242 6695329 -137587160 + L3b LINE CR1 1300 1395 -188 1685 116 0 144 chr12 6697851 6698197 -137584292 - AluJo SINE Alu -12 300 5 342 348 78 15 chr12 6698601 6698871 -137583618 - L2 LINE L2 -1 3271 2985 188 231 0 108 chr12 6698997 6699062 -137583427 + L2 LINE L2 3190 3247 -66 234 0 0 0 chr12 6699088 6699114 -137583375 + (TC)n Simple_repeat Simple_repeat 1 26 0 * 315 0 0 0 chr12 6699113 6699148 -137583341 + (CA)n Simple_repeat Simple_repeat 1 35 0 361 230 130 20 chr12 6699422 6699522 -137582967 + L2 LINE L2 3143 3253 -19 492 328 18 23 chr12 6699526 6699697 -137582792 - MIR SINE MIR -49 213 44 329 306 65 102 chr12 6701571 6701816 -137580673 + MIR SINE MIR 10 245 -17 282 244 89 89 chr12 6702020 6702155 -137580334 + MIR SINE MIR 58 192 -70 1941 147 17 0 chr12 6702313 6702612 -137579877 - AluJb SINE Alu -4 308 5 256 246 179 45 chr12 6702614 6702748 -137579741 - MIR3 SINE MIR -55 153 2 384 326 59 0 chr12 6703313 6703448 -137579041 + MIR SINE MIR 118 260 -2 849 209 37 0 chr12 6703449 6703612 -137578877 - AluJo SINE Alu -20 292 124 2246 83 3 0 chr12 6703692 6703982 -137578507 + AluSg SINE Alu 1 291 -19 2172 100 10 0 chr12 6703999 6704290 -137578199 - AluSq SINE Alu -19 294 1 180 0 0 0 chr12 6704707 6704727 -137577762 + (CA)n Simple_repeat Simple_repeat 1 20 0 216 275 0 38 chr12 6704728 6704808 -137577681 + MIR3 SINE MIR 12 88 -120 511 316 26 94 chr12 6706113 6706496 -137575993 - L2 LINE L2 0 3272 2916 214 285 15 66 chr12 6707202 6707339 -137575150 + G-rich Low_complexity Low_complexity 4 133 0 713 184 0 63 chr12 6708861 6709007 -137573482 + FRAM SINE Alu 1 30 -146 2308 72 0 0 chr12 6709007 6709297 -137573192 - AluY SINE Alu -21 290 1 713 184 0 63 chr12 6709297 6709308 -137573181 + FRAM SINE Alu 30 40 0 3092 161 20 81 chr12 6709308 6709422 -137573067 + L1MB8 LINE L1 5288 5407 -771 2655 26 0 7 chr12 6709422 6709731 -137572758 + AluY SINE Alu 1 307 -4 3092 161 20 81 chr12 6709731 6709826 -137572663 + L1MB8 LINE L1 5407 5506 -672 2075 124 3 10 chr12 6709826 6710170 -137572319 + AluSx SINE Alu 1 312 0 3092 161 20 81 chr12 6710170 6710613 -137571876 + L1MB8 LINE L1 5506 5975 -203 2129 107 7 16 chr12 6710613 6710921 -137571568 + AluSx SINE Alu 1 305 -7 3092 161 20 81 chr12 6710921 6711030 -137571459 + L1MB8 LINE L1 5975 5980 -198 1827 158 31 0 chr12 6711030 6711322 -137571167 - AluJb SINE Alu -11 301 1 3092 161 20 81 chr12 6711322 6711510 -137570979 + L1MB8 LINE L1 5980 6178 0 386 342 33 0 chr12 6711879 6711999 -137570490 + MIR3 SINE MIR 82 205 -3 371 247 62 37 chr12 6712469 6712631 -137569858 - Charlie7 DNA MER1_type -7 2605 2440 2416 62 7 0 chr12 6712851 6713160 -137569329 - AluY SINE Alu 0 311 1 2043 82 0 4 chr12 6713260 6713529 -137568960 + AluY SINE Alu 41 308 -3 556 269 69 0 chr12 6715280 6715440 -137567049 - MIR SINE MIR -14 248 78 226 316 30 98 chr12 6715575 6715708 -137566781 + L2 LINE L2 3143 3266 -6 315 0 0 0 chr12 6715709 6715744 -137566745 + (TGAA)n Simple_repeat Simple_repeat 2 36 0 194 243 50 19 chr12 6716170 6716273 -137566216 + MIR3 SINE MIR 77 164 -44 1954 114 70 0 chr12 6716567 6716838 -137565651 + AluSq SINE Alu 5 294 -19 776 202 88 80 chr12 6716955 6716987 -137565502 + MIR SINE MIR 2 32 -230 2278 104 3 3 chr12 6716987 6717285 -137565204 + AluSq SINE Alu 1 298 -15 776 202 88 80 chr12 6717285 6717490 -137564999 + MIR SINE MIR 32 241 -21 3689 149 25 26 chr12 6717518 6717848 -137564641 + L1MB7 LINE L1 5454 5783 -401 2172 129 0 3 chr12 6717848 6718151 -137564338 + AluJo SINE Alu 1 302 -10 3689 149 25 26 chr12 6718151 6718552 -137563937 + L1MB7 LINE L1 5783 6184 0 2040 134 94 42 chr12 6718673 6719036 -137563453 + MSTB LTR MaLR 2 390 -36 2442 99 0 0 chr12 6719036 6719340 -137563149 - AluSx SINE Alu -6 306 3 2040 134 94 42 chr12 6719340 6719380 -137563109 + MSTB LTR MaLR 390 426 0 390 286 21 36 chr12 6720329 6720469 -137562020 + L2 LINE L2 3176 3313 0 342 360 36 7 chr12 6720493 6720632 -137561857 - MIR3 SINE MIR -65 143 1 2272 88 10 19 chr12 6720729 6721036 -137561453 + AluSp SINE Alu 1 304 -9 213 225 338 0 chr12 6721803 6721883 -137560606 - MIR SINE MIR -59 149 43 1908 146 10 20 chr12 6721952 6722254 -137560235 - AluJb SINE Alu -13 299 1 213 39 0 0 chr12 6722407 6722433 -137560056 + (TAA)n Simple_repeat Simple_repeat 2 27 0 26 74 0 0 chr12 6722656 6722710 -137559779 + GC_rich Low_complexity Low_complexity 1 54 0 186 274 39 0 chr12 6723500 6723551 -137558938 - MER5B DNA MER1_type -68 110 58 2517 53 0 23 chr12 6723745 6724048 -137558441 + AluY SINE Alu 1 296 -15 1852 246 58 25 chr12 6724071 6724298 -137558191 + L1ME3 LINE L1 4316 4534 -1612 1909 129 24 14 chr12 6724298 6724592 -137557897 - AluJb SINE Alu -15 297 1 1852 246 58 25 chr12 6724592 6725073 -137557416 + L1ME3 LINE L1 4534 5096 -1050 2313 60 28 0 chr12 6725141 6725425 -137557064 - AluY SINE Alu -19 292 1 1164 148 59 51 chr12 6725454 6725710 -137556779 + L1ME3 LINE L1 5524 5781 -403 355 222 0 44 chr12 6725753 6725790 -137556699 + L1M3 LINE L1 5648 5685 -486 2470 80 3 0 chr12 6725790 6726092 -137556397 + AluSp SINE Alu 1 303 -10 355 222 0 44 chr12 6726092 6726170 -137556319 + L1M3 LINE L1 5685 5758 -413 2037 158 3 0 chr12 6726229 6726526 -137555963 + AluJb SINE Alu 2 299 -13 271 170 0 0 chr12 6726530 6726577 -137555912 - MIR SINE MIR 0 262 216 549 141 10 10 chr12 6726602 6726701 -137555788 - MER57A LTR ERV1 0 403 305 735 210 204 41 chr12 6726703 6727017 -137555472 + L1ME3 LINE L1 5798 6162 0 373 246 45 18 chr12 6727017 6727127 -137555362 - MER5B DNA MER1_type -49 129 17 410 214 74 107 chr12 6727334 6727402 -137555087 - MIR SINE MIR -4 258 189 2012 181 2 19 chr12 6727402 6727812 -137554677 - MER57A LTR ERV1 0 403 1 410 214 74 107 chr12 6727812 6727958 -137554531 - MIR SINE MIR -73 189 51 476 237 17 58 chr12 6728061 6728217 -137554272 + MIR SINE MIR 46 199 -48 245 266 49 0 chr12 6728509 6728652 -137553837 + (CCTG)n Simple_repeat Simple_repeat 1 150 0 2525 66 0 7 chr12 6728822 6729127 -137553362 + AluY SINE Alu 1 303 -8 582 275 41 0 chr12 6729410 6729581 -137552908 - MIR SINE MIR -75 187 10 308 93 0 19 chr12 6730804 6730858 -137551631 + (TGGGGG)n Simple_repeat Simple_repeat 2 54 0 589 266 7 0 chr12 6730864 6731007 -137551482 + MIR SINE MIR 53 196 -66 1721 108 21 4 chr12 6731068 6731309 -137551180 - AluSx SINE Alu -7 305 61 399 127 0 6 chr12 6731358 6731430 -137551059 - AluSx SINE Alu -245 57 2 379 280 47 27 chr12 6731445 6731595 -137550894 + MIR SINE MIR 82 234 -28 447 216 120 0 chr12 6732177 6732302 -137550187 + MIR SINE MIR 56 195 -67 186 224 0 0 chr12 6733348 6733397 -137549092 + G-rich Low_complexity Low_complexity 5 53 0 279 295 16 23 chr12 6734465 6734594 -137547895 + CT-rich Low_complexity Low_complexity 4 131 0 253 310 110 14 chr12 6736285 6736430 -137546059 - L2 LINE L2 -173 3099 2941 246 359 35 14 chr12 6736572 6736714 -137545775 - MIR3 SINE MIR -62 146 2 928 225 0 11 chr12 6737547 6737738 -137544751 - AluJo SINE Alu -1 311 123 288 246 0 14 chr12 6737741 6737810 -137544679 + MIR SINE MIR 82 149 -59 408 261 37 22 chr12 6737869 6738003 -137544486 - MIR3 SINE MIR -54 154 19 22 0 0 0 chr12 6738360 6738382 -137544107 + AT_rich Low_complexity Low_complexity 1 22 0 256 0 0 0 chr12 6738418 6738448 -137544041 - MER11C LTR ERVK -1041 30 1 2407 86 0 13 chr12 6738919 6739234 -137543255 + AluY SINE Alu 1 311 0 969 176 32 68 chr12 6739276 6739497 -137542992 - MER20 DNA MER1_type 0 219 7 2146 125 0 28 chr12 6739669 6739988 -137542501 + AluSx SINE Alu 1 310 -2 719 264 103 35 chr12 6740322 6740670 -137541819 - LTR33A LTR ERVL -12 511 140 349 282 10 87 chr12 6740884 6740963 -137541526 + L1ME3 LINE L1 5973 6057 -105 2244 126 3 0 chr12 6740963 6741272 -137541217 + AluSg SINE Alu 1 310 0 349 282 10 87 chr12 6741272 6741398 -137541091 + L1ME3 LINE L1 6057 6162 0 519 208 51 97 chr12 6741452 6741668 -137540821 + L1MC5 LINE L1 7697 7902 -59 364 309 87 0 chr12 6742251 6742377 -137540112 - L2 LINE L2 0 3272 3136 180 303 79 0 chr12 6742636 6742712 -137539777 + MIR3 SINE MIR 106 187 -21 2718 30 3 0 chr12 6744895 6745193 -137537296 + AluY SINE Alu 1 299 -12 288 0 0 0 chr12 6745875 6745907 -137536582 + (CA)n Simple_repeat Simple_repeat 2 33 0 713 308 5 19 chr12 6746209 6746420 -137536069 - MIR SINE MIR -30 232 25 363 273 121 9 chr12 6746423 6746654 -137535835 - L1ME4a LINE L1 -21 6100 5844 406 246 204 0 chr12 6746690 6746832 -137535657 - MIR3 SINE MIR -18 190 20 1265 218 102 14 chr12 6748195 6748557 -137533932 - L2 LINE L2 0 3313 2920 271 194 0 60 chr12 6748631 6748698 -137533791 + AluJo SINE Alu 85 147 -155 2247 93 0 4 chr12 6748813 6749093 -137533396 + AluSx SINE Alu 24 302 -10 879 168 0 13 chr12 6749104 6749253 -137533236 + FRAM SINE Alu 26 172 -4 331 171 26 0 chr12 6749253 6749329 -137533160 + GA-rich Low_complexity Low_complexity 1 78 0 839 212 88 14 chr12 6750967 6751184 -137531305 - MIR SINE MIR -2 260 28 1901 153 3 10 chr12 6751379 6751680 -137530809 - AluJo SINE Alu -13 299 1 1723 175 7 20 chr12 6752370 6752662 -137529827 - AluJo SINE Alu -22 290 3 1938 169 54 16 chr12 6752671 6753044 -137529445 - MLT1B LTR MaLR -3 387 1 804 310 40 23 chr12 6753429 6753826 -137528663 + L1M3b LINE L1 1 404 -5877 498 317 50 19 chr12 6754107 6754366 -137528123 + MLT1L LTR MaLR 322 588 -27 893 197 0 0 chr12 6754651 6754803 -137527686 + MER44D DNA MER2_type 13 164 -541 815 211 45 34 chr12 6755141 6755480 -137527009 + LTR35 LTR ERV1 198 618 0 1751 162 17 5 chr12 6755480 6755996 -137526493 + MER44D DNA MER2_type 160 605 0 1042 261 53 78 chr12 6756014 6756342 -137526147 - L1MC4a LINE L1 -1913 5895 5560 2547 58 0 3 chr12 6756342 6756637 -137525852 - AluY SINE Alu -17 294 1 1042 261 53 78 chr12 6756637 6756891 -137525598 - L1MC4a LINE L1 -2248 5560 5326 1968 135 37 7 chr12 6756891 6757187 -137525302 - AluJb SINE Alu -7 305 1 1042 261 53 78 chr12 6757187 6757208 -137525281 - L1MC4a LINE L1 -2482 5326 5306 260 303 103 44 chr12 6757304 6757588 -137524901 - L1MC4a LINE L1 -1307 4839 4516 2487 92 0 0 chr12 6757588 6757892 -137524597 - AluSx SINE Alu -8 304 1 260 303 103 44 chr12 6757892 6758063 -137524426 - L1MC4a LINE L1 -1630 4516 4357 2551 77 0 0 chr12 6758115 6758426 -137524063 - AluY SINE Alu 0 311 1 877 164 0 14 chr12 6758474 6758614 -137523875 - AluJo SINE Alu -174 138 1 906 150 0 14 chr12 6758662 6758802 -137523687 - AluJo SINE Alu -174 138 1 927 143 0 14 chr12 6758850 6758990 -137523499 - AluJo SINE Alu -174 138 1 279 320 74 0 chr12 6758994 6759116 -137523373 - L1MC4a LINE L1 -1982 4164 4034 198 284 15 0 chr12 6759245 6759312 -137523177 - L2 LINE L2 -747 2567 2500 290 339 41 39 chr12 6759556 6759838 -137522651 - L2 LINE L2 -205 3067 2736 315 226 16 0 chr12 6759854 6759916 -137522573 + L1MC4 LINE L1 6640 6702 -1340 202 158 0 26 chr12 6759918 6759956 -137522533 + (TA)n Simple_repeat Simple_repeat 2 38 0 261 0 0 0 chr12 6759961 6759990 -137522499 + (TG)n Simple_repeat Simple_repeat 2 30 0 2089 111 39 0 chr12 6759997 6760277 -137522212 - AluSx SINE Alu -21 291 1 449 256 47 0 chr12 6760288 6760417 -137522072 - L1ME3 LINE L1 -30 6132 5998 2100 137 13 0 chr12 6760516 6760816 -137521673 - AluSq SINE Alu -9 304 1 1661 129 47 35 chr12 6760829 6761147 -137521342 - L1MD3 LINE L1 0 7995 7674 1477 177 15 11 chr12 6761147 6761413 -137521076 + AluJb SINE Alu 46 312 0 676 129 39 25 chr12 6761416 6761548 -137520941 - L1ME3 LINE L1 -568 5594 5455 2055 79 0 0 chr12 6761726 6761978 -137520511 - AluY SINE Alu 0 311 60 2499 224 76 19 chr12 6762195 6762390 -137520099 - L1MC/D LINE L1 -743 6198 6016 2202 125 0 22 chr12 6762390 6762526 -137519963 + AluSx SINE Alu 1 138 -174 2417 86 3 10 chr12 6762526 6762840 -137519649 + AluSp SINE Alu 1 312 -1 2202 125 0 22 chr12 6762840 6763022 -137519467 + AluSx SINE Alu 138 312 0 2499 224 76 19 chr12 6763022 6763773 -137518716 - L1MC/D LINE L1 -925 6016 5291 1720 170 6 45 chr12 6763777 6764088 -137518401 - AluJo SINE Alu -13 299 1 302 282 75 65 chr12 6764241 6764642 -137517847 - L1MC5 LINE L1 -62 7899 7495 284 261 76 0 chr12 6764641 6764760 -137517729 - L1MC5 LINE L1 -1201 6760 6633 * 2441 80 0 0 chr12 6764777 6765078 -137517411 - AluSx SINE Alu -11 301 1 453 298 98 30 chr12 6765689 6765924 -137516565 - ERVL LTR ERVL -1154 4610 4360 635 301 58 55 chr12 6765952 6766065 -137516424 - ERVL LTR ERVL -1496 4268 4157 2396 92 0 0 chr12 6766065 6766359 -137516130 - AluSx SINE Alu -12 300 7 635 301 58 55 chr12 6766359 6766740 -137515749 - ERVL LTR ERVL -1607 4157 3772 299 261 225 0 chr12 6766810 6766921 -137515568 - MIR SINE MIR 0 262 127 2189 122 13 0 chr12 6767009 6767351 -137515138 - AluSx SINE Alu 0 312 1 404 238 29 0 chr12 6767359 6767464 -137515025 - L1MC/D LINE L1 -1662 5279 5172 869 201 68 93 chr12 6767484 6767516 -137514973 - L1MCb LINE L1 -4620 2502 2471 2112 105 40 7 chr12 6767516 6767812 -137514677 - AluSq SINE Alu -7 306 1 869 201 68 93 chr12 6767812 6767910 -137514579 - L1MCb LINE L1 -4651 2471 2372 845 165 0 0 chr12 6767910 6768043 -137514446 + FLAM_C SINE Alu 1 133 0 869 201 68 93 chr12 6768043 6768064 -137514425 - L1MCb LINE L1 -4750 2372 2352 2092 107 71 0 chr12 6768064 6768344 -137514145 + AluSx SINE Alu 1 300 -12 869 201 68 93 chr12 6768344 6768654 -137513835 - L1MCb LINE L1 -4770 2352 2036 186 43 0 0 chr12 6768654 6768677 -137513812 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 869 201 68 93 chr12 6768677 6768817 -137513672 - L1MCb LINE L1 -5086 2036 1681 1083 217 103 75 chr12 6769309 6769581 -137512908 - L1MCb LINE L1 -4852 1570 1307 2033 133 13 32 chr12 6769581 6769897 -137512592 - AluSg SINE Alu 0 310 1 1083 217 103 75 chr12 6769897 6770387 -137512102 - L1MCb LINE L1 -5115 1307 814 2133 124 17 0 chr12 6770507 6770805 -137511684 - AluSx SINE Alu -9 303 1 350 210 48 29 chr12 6771122 6771270 -137511219 - L1MCb LINE L1 -5890 532 52 1702 93 4 9 chr12 6771340 6771565 -137510924 - AluSg/x SINE Alu -16 296 73 1407 213 39 58 chr12 6771565 6771810 -137510679 - L1MCa LINE L1 -1453 4973 4738 2195 119 0 0 chr12 6771810 6772104 -137510385 - AluSx SINE Alu -14 298 5 1407 213 39 58 chr12 6772104 6772290 -137510199 - L1MCa LINE L1 -1688 4738 4550 2035 125 0 7 chr12 6772290 6772579 -137509910 + AluSx SINE Alu 1 287 -25 5215 199 51 38 chr12 6772587 6772932 -137509557 - L1MCa LINE L1 -2438 3988 3649 2242 110 3 3 chr12 6772932 6773233 -137509256 - AluSq SINE Alu -12 301 1 5215 199 51 38 chr12 6773233 6774283 -137508206 - L1MCa LINE L1 -2777 3649 2556 2371 110 0 3 chr12 6774283 6774593 -137507896 - AluSg SINE Alu -1 309 1 5215 199 51 38 chr12 6774593 6775221 -137507268 - L1MCa LINE L1 -3870 2556 1937 1049 105 0 0 chr12 6775221 6775354 -137507135 + AluSq/x SINE Alu 1 133 -179 2075 157 0 3 chr12 6775366 6775679 -137506810 + AluSx SINE Alu 1 312 0 238 364 178 0 chr12 6775778 6775896 -137506593 - L2 LINE L2 0 3272 3134 425 347 113 24 chr12 6775988 6776490 -137505999 + L2 LINE L2 863 1409 -1905 401 167 3 0 chr12 6776504 6776588 -137505901 + L1ME2 LINE L1 5459 5543 -619 2891 148 60 21 chr12 6776592 6777126 -137505363 - MER21A LTR ERV1 0 931 377 1387 107 95 8 chr12 6777132 6777375 -137505114 - MER21A LTR ERV1 -667 264 1 1563 168 35 17 chr12 6777378 6777723 -137504766 + L1ME2 LINE L1 5546 5896 -268 1905 129 9 44 chr12 6777731 6778048 -137504441 + AluSq SINE Alu 1 306 -7 618 168 44 0 chr12 6778054 6778167 -137504322 - L1ME LINE L1 -421 5700 5583 221 333 55 36 chr12 6778268 6778433 -137504056 + L2 LINE L2 3105 3272 -41 299 233 23 33 chr12 6778685 6778824 -137503665 - MER91 DNA MER1_type -7 189 8 193 345 18 35 chr12 6778842 6778955 -137503534 + L2 LINE L2 2981 3091 -181 1904 141 17 7 chr12 6779011 6779308 -137503181 + AluJb SINE Alu 1 300 -12 2542 68 7 0 chr12 6779376 6779684 -137502805 - AluSg SINE Alu 0 310 1 215 250 39 0 chr12 6779704 6779756 -137502733 + L2 LINE L2 3258 3311 -2 240 326 45 11 chr12 6779760 6779849 -137502640 + MIR3 SINE MIR 102 193 -15 2227 104 0 3 chr12 6780528 6780847 -137501642 - AluSx SINE Alu 0 312 1 258 32 0 0 chr12 6780859 6780890 -137501599 + (TTCC)n Simple_repeat Simple_repeat 2 32 0 1359 121 0 0 chr12 6780890 6781072 -137501417 - AluSg/x SINE Alu -2 310 129 2445 82 26 0 chr12 6781072 6781376 -137501113 - AluSx SINE Alu 0 312 1 683 162 8 17 chr12 6781403 6781520 -137500969 + AluJo/FLAM SINE Alu 3 118 -194 2171 105 3 14 chr12 6781520 6781842 -137500647 - AluSg SINE Alu 0 310 1 2471 93 0 3 chr12 6781895 6782205 -137500284 - AluSc SINE Alu 0 309 1 3159 117 7 7 chr12 6782436 6782899 -137499590 - L1PB4 LINE L1 0 6156 5694 25 0 0 0 chr12 6783668 6783693 -137498796 + AT_rich Low_complexity Low_complexity 1 25 0 342 236 55 29 chr12 6783956 6784109 -137498380 + MLT2E LTR ERVL 1 154 -474 592 273 47 13 chr12 6784128 6784523 -137497966 + MLT2F LTR ERVL 213 661 -2 25 0 0 0 chr12 6784671 6784696 -137497793 + AT_rich Low_complexity Low_complexity 1 25 0 24 32 0 0 chr12 6784729 6784760 -137497729 + AT_rich Low_complexity Low_complexity 1 31 0 2040 148 0 3 chr12 6784760 6785065 -137497424 + AluJb SINE Alu 2 305 -7 1728 146 0 43 chr12 6785741 6786022 -137496467 + AluSx SINE Alu 1 269 -43 186 0 88 0 chr12 6786059 6786093 -137496396 + A-rich Low_complexity Low_complexity 2 38 0 1959 137 16 22 chr12 6786528 6786842 -137495647 + AluJb SINE Alu 1 312 0 4081 181 27 45 chr12 6786846 6786867 -137495622 + L1MB7 LINE L1 4357 4377 -1803 2271 115 3 6 chr12 6786867 6787181 -137495308 + AluSq SINE Alu 1 313 0 4081 181 27 45 chr12 6787181 6787231 -137495258 + L1MB7 LINE L1 4377 4426 -1754 2227 123 0 3 chr12 6787231 6787532 -137494957 + AluSx SINE Alu 1 300 -12 4081 181 27 45 chr12 6787532 6788254 -137494235 + L1MB7 LINE L1 4426 5159 -1021 2500 51 7 0 chr12 6788254 6788549 -137493940 - AluY SINE Alu -14 297 1 4081 181 27 45 chr12 6788549 6788622 -137493867 + L1MB7 LINE L1 5159 5232 -948 2328 63 0 48 chr12 6788622 6788937 -137493552 - AluY SINE Alu -11 300 1 4081 181 27 45 chr12 6788937 6789222 -137493267 + L1MB7 LINE L1 5232 5488 -692 287 193 91 0 chr12 6789229 6789317 -137493172 + L1MB7 LINE L1 6073 6168 -16 725 323 88 23 chr12 6789754 6790323 -137492166 + L1MC4a LINE L1 5347 5952 -1856 1767 189 10 0 chr12 6790440 6790741 -137491748 + AluJo SINE Alu 1 304 -8 22 0 0 0 chr12 6791156 6791178 -137491311 + AT_rich Low_complexity Low_complexity 1 22 0 2260 104 0 0 chr12 6791184 6791497 -137490992 + AluSc SINE Alu 1 313 0 2240 134 3 0 chr12 6791497 6791804 -137490685 + AluSq SINE Alu 1 308 -5 1986 136 34 0 chr12 6791831 6792126 -137490363 + AluSx SINE Alu 8 312 0 338 130 91 26 chr12 6792523 6792600 -137489889 - L1ME3A LINE L1 -208 5962 5881 472 101 56 11 chr12 6792648 6792737 -137489752 - L1MB4 LINE L1 -1 6179 6087 335 244 16 32 chr12 6792738 6792861 -137489628 - L1ME3A LINE L1 -296 5874 5754 638 174 39 0 chr12 6792864 6793019 -137489470 + CT-rich Low_complexity Low_complexity 3 163 0 1697 138 0 0 chr12 6793020 6793260 -137489229 - AluSx SINE Alu -64 248 9 180 0 0 0 chr12 6793264 6793284 -137489205 + (CTTG)n Simple_repeat Simple_repeat 2 21 0 22 35 0 0 chr12 6793435 6793464 -137489025 + AT_rich Low_complexity Low_complexity 1 29 0 378 175 184 19 chr12 6793661 6793764 -137488725 + MIR SINE MIR 31 150 -58 424 219 102 71 chr12 6793976 6794172 -137488317 + MER63A DNA MER1_type 2 203 -7 2005 118 0 70 chr12 6794418 6794557 -137487932 + AluJb SINE Alu 7 113 -199 2316 89 3 0 chr12 6794557 6794850 -137487639 + AluSp SINE Alu 2 295 -18 2005 118 0 70 chr12 6794850 6795025 -137487464 + AluJb SINE Alu 113 299 -13 2369 103 3 0 chr12 6795047 6795348 -137487141 + AluSx SINE Alu 1 302 -10 264 372 92 9 chr12 6795601 6795819 -137486670 - MIR SINE MIR -6 256 21 1567 114 72 50 chr12 6796159 6796445 -137486044 + AluJo SINE Alu 14 305 0 2522 71 0 3 chr12 6796447 6796757 -137485732 + AluY SINE Alu 1 309 -2 524 304 18 28 chr12 6796758 6796975 -137485514 + L1MEd LINE L1 473 687 -5432 709 126 10 0 chr12 6797047 6797150 -137485339 - FLAM_C SINE Alu -32 111 8 355 229 120 17 chr12 6797218 6797393 -137485096 + Charlie7 DNA MER1_type 2205 2397 -215 663 144 10 0 chr12 6797511 6797608 -137484881 - AluJ/FLAM SINE Alu -213 99 2 26 30 0 0 chr12 6797709 6797742 -137484747 + AT_rich Low_complexity Low_complexity 1 33 0 751 247 102 23 chr12 6798512 6798601 -137483888 + L1MEd LINE L1 2661 2742 -3387 1850 199 84 31 chr12 6798601 6799079 -137483410 - MLT1D LTR MaLR 0 505 3 751 247 102 23 chr12 6799079 6799381 -137483108 + L1MEd LINE L1 2742 3083 -3046 2101 131 7 0 chr12 6799382 6799680 -137482809 + AluSx SINE Alu 2 301 -11 21 0 0 0 chr12 6799759 6799780 -137482709 + AT_rich Low_complexity Low_complexity 1 21 0 1910 152 0 19 chr12 6800011 6800327 -137482162 - AluJo SINE Alu -2 310 1 390 316 19 52 chr12 6800348 6800503 -137481986 + L2 LINE L2 3121 3270 -2 2303 114 0 9 chr12 6801440 6801755 -137480734 + AluSx SINE Alu 1 312 0 981 132 0 0 chr12 6801972 6802108 -137480381 + AluSq/x SINE Alu 1 136 -177 1585 165 110 0 chr12 6802108 6802380 -137480109 + AluSg SINE Alu 1 302 -8 792 220 129 4 chr12 6803587 6803819 -137478670 + MER46C DNA MER2_type 78 338 0 877 232 0 0 chr12 6805570 6805734 -137476755 - FRAM SINE Alu -1 165 2 1275 156 66 80 chr12 6805763 6806046 -137476443 + AluJb SINE Alu 3 282 -26 216 0 0 0 chr12 6806046 6806070 -137476419 + (CA)n Simple_repeat Simple_repeat 1 24 0 1967 141 0 33 chr12 6806080 6806386 -137476103 + AluJb SINE Alu 9 304 -8 188 237 0 0 chr12 6806748 6806786 -137475703 + MIR SINE MIR 109 146 -62 216 0 0 0 chr12 6806889 6806913 -137475576 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 1982 46 8 0 chr12 6806916 6807154 -137475335 - L1PA5 LINE L1 -13 6141 5902 2177 94 7 3 chr12 6807768 6808055 -137474434 + AluSg SINE Alu 16 303 -7 555 163 71 21 chr12 6808097 6808211 -137474278 - L1MB7 LINE L1 -78 6106 5999 213 39 0 0 chr12 6808211 6808237 -137474252 + (CCCCAG)n Simple_repeat Simple_repeat 3 28 0 555 163 71 21 chr12 6808237 6808255 -137474234 - L1MB7 LINE L1 -185 5999 5983 2135 138 0 3 chr12 6808255 6808566 -137473923 - AluJb SINE Alu -2 310 1 1018 91 0 0 chr12 6808573 6808705 -137473784 - AluSg/x SINE Alu 0 309 178 332 239 60 0 chr12 6808709 6808826 -137473663 + L1ME3A LINE L1 6043 6166 -4 2316 113 0 3 chr12 6808838 6809147 -137473342 + AluSq SINE Alu 1 308 -5 2358 101 10 0 chr12 6813005 6813312 -137469177 + AluSq SINE Alu 1 310 -3 2194 122 3 0 chr12 6813456 6813760 -137468729 + AluSx SINE Alu 1 305 -7 494 214 24 71 chr12 6814333 6814501 -137467988 - L1MC4 LINE L1 -16 8026 7867 613 229 13 38 chr12 6814653 6814810 -137467679 + MER97a DNA MER1_type? 27 179 -715 704 119 9 37 chr12 6814922 6815031 -137467458 + FLAM_A SINE Alu 4 109 -33 2265 107 10 0 chr12 6815033 6815324 -137467165 - AluSx SINE Alu -18 294 1 629 242 96 42 chr12 6815363 6815623 -137466866 - L1MC4 LINE L1 -313 7729 7456 2095 88 4 0 chr12 6815633 6815894 -137466595 - AluSp SINE Alu -13 300 39 2461 89 6 10 chr12 6815907 6816221 -137466268 - AluSq SINE Alu 0 313 1 246 224 0 0 chr12 6816294 6816343 -137466146 - MIR SINE MIR -157 105 57 336 222 70 105 chr12 6817339 6817374 -137465115 - MER97a DNA MER1_type? -727 167 132 2266 87 35 0 chr12 6817374 6817660 -137464829 + AluSg SINE Alu 1 296 -14 336 222 70 105 chr12 6817660 6817795 -137464694 - MER97a DNA MER1_type? -762 132 3 255 264 85 28 chr12 6818430 6818536 -137463953 - L2 LINE L2 -39 3233 3122 208 351 40 60 chr12 6818552 6818703 -137463786 - L2 LINE L2 -277 2995 2848 383 298 193 6 chr12 6818727 6818908 -137463581 - MIR SINE MIR -13 249 35 351 0 0 0 chr12 6818993 6819032 -137463457 + (TTTA)n Simple_repeat Simple_repeat 2 40 0 2200 123 3 0 chr12 6819034 6819334 -137463155 - AluSx SINE Alu -11 301 1 1997 136 0 4 chr12 6819514 6819829 -137462660 - AluSx SINE Alu 0 316 3 180 0 0 0 chr12 6824075 6824095 -137458394 + (CAGG)n Simple_repeat Simple_repeat 1 20 0 366 107 0 0 chr12 6824623 6824679 -137457810 + (TA)n Simple_repeat Simple_repeat 1 56 0 303 28 0 0 chr12 6824679 6824715 -137457774 + (TG)n Simple_repeat Simple_repeat 2 37 0 949 128 0 0 chr12 6825620 6825753 -137456736 + FLAM_A SINE Alu 1 133 0 2780 65 8 0 chr12 6826047 6826399 -137456090 + THE1A LTR MaLR 1 355 0 2889 48 0 3 chr12 6826399 6826770 -137455719 + THE1A-int LTR MaLR 1 370 -1210 4761 114 3 1 chr12 6826781 6827465 -137455024 + THE1A-int LTR MaLR 482 1166 -414 267 287 201 12 chr12 6830490 6830654 -137451835 + L2 LINE L2 2335 2529 -785 1390 185 61 37 chr12 6830708 6830764 -137451725 - HsTC2 DNA Tc2 -22 1876 1823 2269 97 7 3 chr12 6830764 6831062 -137451427 + AluSx SINE Alu 1 299 -13 1390 185 61 37 chr12 6831062 6831415 -137451074 - HsTC2 DNA Tc2 -75 1823 1281 188 260 0 52 chr12 6831566 6831643 -137450846 + L2 LINE L2 2641 2713 -601 999 169 5 31 chr12 6831786 6831966 -137450523 + AluJo SINE Alu 123 299 -13 2102 132 26 0 chr12 6831966 6832270 -137450219 + AluSx SINE Alu 1 312 0 999 169 5 31 chr12 6832270 6832284 -137450205 + AluJo SINE Alu 299 312 0 1910 143 0 28 chr12 6832385 6832672 -137449817 + AluJb SINE Alu 11 289 -23 2631 45 0 13 chr12 6832691 6832999 -137449490 - AluY SINE Alu -7 304 1 2578 174 73 90 chr12 6832999 6833780 -137448709 - L1MD2 LINE L1 -10 6349 5582 608 170 75 0 chr12 6833785 6833879 -137448610 - FLAM_A SINE Alu -41 101 1 605 181 39 19 chr12 6833885 6834040 -137448449 - L1MD2 LINE L1 -879 5480 5323 7445 42 3 200 chr12 6834040 6835410 -137447079 - SVA Other Other -4 1382 283 1281 103 6 0 chr12 6835410 6835575 -137446914 - AluSq SINE Alu -134 179 14 335 296 35 52 chr12 6835613 6835728 -137446761 - HAL1 LINE L1 -1230 1277 1165 513 317 27 0 chr12 6835728 6835914 -137446575 - L1MEd LINE L1 -5368 751 561 607 177 54 20 chr12 6836385 6836532 -137445957 + L1M4 LINE L1 4695 4846 -1300 2455 77 0 3 chr12 6836541 6836840 -137445649 - AluSc SINE Alu -11 298 1 26 0 0 0 chr12 6840123 6840149 -137442340 + AT_rich Low_complexity Low_complexity 1 26 0 2290 73 45 7 chr12 6840308 6840597 -137441892 - AluSg SINE Alu -10 300 1 21 36 0 0 chr12 6841026 6841054 -137441435 + AT_rich Low_complexity Low_complexity 1 28 0 2300 92 3 3 chr12 6841438 6841731 -137440758 + AluSg SINE Alu 1 293 -17 1634 202 14 10 chr12 6841881 6842178 -137440311 + AluJo SINE Alu 1 298 -14 729 110 39 58 chr12 6842187 6842320 -137440169 + L1MB5 LINE L1 5823 5954 -224 2095 114 3 24 chr12 6842320 6842617 -137439872 + AluSx SINE Alu 18 308 -4 729 110 39 58 chr12 6842617 6842637 -137439852 + L1MB5 LINE L1 5954 5973 -205 1671 148 0 0 chr12 6842638 6842868 -137439621 + AluSx SINE Alu 1 230 -82 329 219 79 53 chr12 6842910 6843024 -137439465 + L1MB5 LINE L1 5977 6093 -81 2227 106 0 7 chr12 6843037 6843329 -137439160 + AluSc SINE Alu 1 290 -19 1431 136 37 0 chr12 6843329 6843602 -137438887 + L1MA8 LINE L1 6009 6291 0 538 193 18 0 chr12 6843611 6843725 -137438764 + L1MB7 LINE L1 6050 6165 -19 183 80 0 0 chr12 6843902 6843927 -137438562 + (TTTG)n Simple_repeat Simple_repeat 4 28 0 696 170 36 0 chr12 6843927 6844039 -137438450 - AluJb SINE Alu -195 117 2 310 267 0 116 chr12 6844040 6844108 -137438381 - HAL1 LINE L1 -139 2368 2294 1889 139 3 58 chr12 6844108 6844248 -137438241 - AluJb SINE Alu 0 312 166 2480 81 0 7 chr12 6844248 6844555 -137437934 - AluSg SINE Alu -5 305 1 1889 139 3 58 chr12 6844555 6844744 -137437745 - AluJb SINE Alu -146 166 1 2130 130 0 3 chr12 6844754 6845079 -137437410 - AluSx SINE Alu 0 324 1 310 267 0 116 chr12 6845079 6845144 -137437345 - HAL1 LINE L1 -223 2284 2240 * 477 327 99 5 chr12 6845143 6845345 -137437144 + L1 LINE L1 3893 4113 -2033 1462 80 9 38 chr12 6845345 6845521 -137436968 - AluSg/x SINE Alu -1 309 138 2183 91 0 18 chr12 6845521 6845834 -137436655 - AluSq SINE Alu 0 313 9 1462 80 9 38 chr12 6845834 6845870 -137436619 - AluSg/x SINE Alu -172 138 103 1675 128 6 106 chr12 6845922 6846251 -137436238 - AluJo SINE Alu -10 302 7 2341 97 0 0 chr12 6846348 6846647 -137435842 + AluY SINE Alu 1 299 -12 1615 116 16 0 chr12 6846653 6846903 -137435586 - L1M4 LINE L1 -382 5802 5549 2489 65 0 0 chr12 6846914 6847206 -137435283 - AluY SINE Alu -19 292 1 266 254 162 81 chr12 6847323 6847496 -137434993 + L2 LINE L2 2897 3083 -189 1994 156 0 22 chr12 6847593 6847908 -137434581 - AluSx SINE Alu -4 308 1 186 43 0 0 chr12 6847969 6847992 -137434497 + (A)n Simple_repeat Simple_repeat 1 23 0 799 293 52 40 chr12 6848093 6848229 -137434260 + HERV16 LTR ERVL 2404 2537 -2459 1992 150 3 16 chr12 6848229 6848543 -137433946 - AluJb SINE Alu -1 311 2 2310 102 10 0 chr12 6848551 6848855 -137433634 - AluSp SINE Alu -6 307 1 799 293 52 40 chr12 6848855 6849033 -137433456 + HERV16 LTR ERVL 2543 2731 -2265 2251 97 3 13 chr12 6849056 6849356 -137433133 - AluSg SINE Alu -4 306 10 1149 143 104 137 chr12 6849875 6850182 -137432307 - AluJo SINE Alu -5 297 1 1517 160 15 108 chr12 6850193 6850394 -137432095 - AluJo SINE Alu 0 302 143 2086 100 16 48 chr12 6850394 6850704 -137431785 - AluY SINE Alu -11 300 1 1517 160 15 108 chr12 6850704 6850834 -137431655 - AluJo SINE Alu -159 143 2 21 0 0 0 chr12 6850842 6850863 -137431626 + AT_rich Low_complexity Low_complexity 1 21 0 375 244 94 17 chr12 6851817 6851997 -137430492 + MIR SINE MIR 1 262 0 405 309 7 33 chr12 6852785 6852937 -137429552 - MIR SINE MIR -80 182 35 332 274 92 30 chr12 6853614 6853778 -137428711 + MIR SINE MIR 87 260 -2 634 164 141 16 chr12 6855038 6855166 -137427323 + MIR SINE MIR 9 152 -110 2323 114 0 7 chr12 6855282 6855589 -137426900 - AluSx SINE Alu -2 310 6 1791 164 0 23 chr12 6855640 6855939 -137426550 - AluJb SINE Alu 0 312 21 689 179 0 0 chr12 6855939 6856045 -137426444 - AluJb SINE Alu -59 253 148 234 179 0 0 chr12 6856045 6856084 -137426405 - AluJb SINE Alu -262 39 1 465 101 25 25 chr12 6856084 6856163 -137426326 - Tigger3(Golem) DNA MER2_type -673 2356 2278 * 507 219 29 0 chr12 6856154 6856259 -137426230 - Tigger3(Golem) DNA MER2_type -2921 108 1 2086 93 100 3 chr12 6856535 6856846 -137425643 - L1PA10 LINE L1 -10 6158 5818 2320 97 3 0 chr12 6856851 6857151 -137425338 - AluSg SINE Alu -9 301 1 1674 145 86 21 chr12 6857153 6857443 -137425046 - AluJb SINE Alu -3 309 1 496 250 103 51 chr12 6857534 6857690 -137424799 - L2 LINE L2 -1 3312 3149 2328 147 47 33 chr12 6857693 6857847 -137424642 - MER44D DNA MER2_type -1892 595 445 2219 89 10 3 chr12 6857847 6858138 -137424351 - AluSc SINE Alu -16 293 1 2328 147 47 33 chr12 6858138 6858433 -137424056 - MER44D DNA MER2_type -2042 445 85 1143 173 0 5 chr12 6858434 6858619 -137423870 - AluJb SINE Alu -1 311 128 2105 126 0 13 chr12 6858624 6858926 -137423563 - AluSx SINE Alu -14 298 1 507 194 0 10 chr12 6858926 6859024 -137423465 - MER44D DNA MER2_type -608 97 1 2923 229 182 123 chr12 6859024 6859073 -137423416 - L2 LINE L2 -163 3150 3105 2019 149 3 7 chr12 6859073 6859375 -137423114 + AluJb SINE Alu 1 301 -11 530 181 133 0 chr12 6859380 6859485 -137423004 + FLAM_A SINE Alu 2 120 -13 2923 229 182 123 chr12 6859485 6859767 -137422722 - L2 LINE L2 -211 3102 2838 518 216 116 88 chr12 6859767 6859948 -137422541 + MER5A DNA MER1_type 4 189 0 2923 229 182 123 chr12 6859948 6860291 -137422198 - L2 LINE L2 -475 2838 2517 1068 116 23 52 chr12 6860291 6860463 -137422026 - AluSg/x SINE Alu -13 299 133 1484 116 209 8 chr12 6860463 6860722 -137421767 - AluY SINE Alu 0 311 1 2923 229 182 123 chr12 6860722 6861816 -137420673 - L2 LINE L2 -795 2518 1095 1021 133 20 0 chr12 6861903 6862054 -137420435 + FRAM SINE Alu 1 154 -22 2039 95 24 44 chr12 6862067 6862389 -137420100 - AluSg SINE Alu 0 316 1 1106 258 52 27 chr12 6862509 6862724 -137419765 - MSTD LTR MaLR -15 381 173 2359 71 0 4 chr12 6862724 6863004 -137419485 + AluSg SINE Alu 1 279 -31 1106 258 52 27 chr12 6863004 6863025 -137419464 - MSTD LTR MaLR -223 173 154 1488 94 0 5 chr12 6863025 6863217 -137419272 + AluSg/x SINE Alu 94 284 -25 1106 258 52 27 chr12 6863217 6863348 -137419141 - MSTD LTR MaLR -242 154 4 570 41 0 0 chr12 6863405 6863478 -137419011 + (TA)n Simple_repeat Simple_repeat 1 73 0 1123 159 56 24 chr12 6863481 6863622 -137418867 - Tigger2 DNA MER2_type -3 2715 2580 195 42 0 0 chr12 6863622 6863646 -137418843 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 2027 133 4 0 chr12 6863647 6863926 -137418563 - AluSx SINE Alu -32 280 1 1123 159 56 24 chr12 6863926 6864033 -137418456 - Tigger2 DNA MER2_type -137 2581 2457 3080 131 8 82 chr12 6864076 6864307 -137418182 - Tigger2 DNA MER2_type -1974 744 497 2145 102 7 7 chr12 6864307 6864600 -137417889 - AluSq SINE Alu -20 293 1 3080 131 8 82 chr12 6864600 6864791 -137417698 - Tigger2 DNA MER2_type -2221 497 293 1805 153 6 80 chr12 6864791 6865117 -137417372 + AluSx SINE Alu 1 302 -10 3080 131 8 82 chr12 6865117 6865194 -137417295 - Tigger2 DNA MER2_type -2425 293 212 1793 191 10 0 chr12 6865194 6865492 -137416997 - AluJb SINE Alu -11 301 1 3080 131 8 82 chr12 6865492 6865540 -137416949 - Tigger2 DNA MER2_type -2506 212 245 2438 57 0 10 chr12 6865540 6865839 -137416650 + AluY SINE Alu 1 296 -15 3080 131 8 82 chr12 6865839 6865921 -137416568 - Tigger2 DNA MER2_type -2472 246 159 1110 185 0 0 chr12 6865925 6866098 -137416391 + FRAM SINE Alu 1 165 -11 375 218 13 0 chr12 6866098 6866176 -137416313 - Tigger2 DNA MER2_type -2639 79 1 * 785 268 21 0 chr12 6866176 6866368 -137416121 + L1MC4 LINE L1 6689 6884 -1158 791 161 0 0 chr12 6866368 6866498 -137415991 - FLAM_C SINE Alu 0 143 14 270 178 0 0 chr12 6866545 6866590 -137415899 + FLAM_A SINE Alu 1 45 -86 2258 124 26 0 chr12 6866590 6866929 -137415560 - LTR10D LTR ERV1 0 513 166 1219 159 29 0 chr12 6866936 6867175 -137415314 - LTR10D LTR ERV1 -265 248 3 557 158 10 0 chr12 6867175 6867276 -137415213 + FLAM_A SINE Alu 39 140 -2 1690 132 33 50 chr12 6867283 6867586 -137414903 + AluJb SINE Alu 1 298 -14 3116 175 92 7 chr12 6867586 6868307 -137414182 + L1MC4a LINE L1 6838 7619 -189 2209 90 3 16 chr12 6868486 6868796 -137413693 - AluSq SINE Alu -7 306 1 236 51 0 51 chr12 6869401 6869440 -137413049 + (TTTG)n Simple_repeat Simple_repeat 2 38 0 2045 120 13 10 chr12 6870555 6870863 -137411626 - AluSq SINE Alu -4 309 1 2066 116 0 7 chr12 6870934 6871227 -137411262 + AluSq SINE Alu 1 291 -22 216 150 0 0 chr12 6871227 6871234 -137411255 + (TAGA)n Simple_repeat Simple_repeat 1 7 -33 2286 51 40 10 chr12 6871234 6871530 -137410959 + AluY SINE Alu 1 305 -6 216 150 0 0 chr12 6871530 6871562 -137410927 + (TAGA)n Simple_repeat Simple_repeat 6 40 0 3537 243 69 18 chr12 6871563 6872495 -137409994 - L2 LINE L2 -248 3065 2067 1611 121 110 8 chr12 6872495 6872759 -137409730 + AluJb SINE Alu 2 292 -20 3537 243 69 18 chr12 6872759 6872944 -137409545 - L2 LINE L2 -1246 2067 1893 2203 105 0 3 chr12 6872944 6873249 -137409240 - AluSg SINE Alu -6 304 1 1743 144 30 0 chr12 6874429 6874700 -137407789 - AluJo SINE Alu -14 298 20 2172 121 0 13 chr12 6875144 6875450 -137407039 + AluSx SINE Alu 1 302 -10 2263 82 0 0 chr12 6875459 6875752 -137406737 + AluSg SINE Alu 4 296 -14 354 263 40 66 chr12 6877482 6877634 -137404855 + MIR3 SINE MIR 77 206 -2 2257 104 0 13 chr12 6877739 6878055 -137404434 - AluSx SINE Alu 0 312 1 2388 44 0 17 chr12 6878127 6878424 -137404065 - AluY SINE Alu -19 292 1 685 117 15 209 chr12 6878591 6878787 -137403702 - FRAM SINE Alu -18 158 1 328 248 67 29 chr12 6878826 6878931 -137403558 - L1MC4a LINE L1 -1839 5969 5861 1054 149 29 11 chr12 6878942 6879117 -137403372 + AluSg/x SINE Alu 120 297 -15 1771 176 0 23 chr12 6879126 6879427 -137403062 + AluSx SINE Alu 1 294 -18 231 125 0 0 chr12 6879427 6879467 -137403022 + (TA)n Simple_repeat Simple_repeat 1 40 0 813 191 0 32 chr12 6879481 6879638 -137402851 - AluJ SINE Alu -21 291 140 555 186 10 10 chr12 6879702 6879804 -137402685 - AluJ SINE Alu -149 163 62 303 247 157 0 chr12 6879804 6879893 -137402596 - L1MC4a LINE L1 -1982 5826 5724 1602 181 13 25 chr12 6880634 6880948 -137401541 + AluJb SINE Alu 1 310 -2 799 155 0 49 chr12 6881325 6881467 -137401022 - AluJ SINE Alu -176 136 2 1755 146 13 17 chr12 6881538 6881839 -137400650 + AluJo SINE Alu 1 300 -12 2174 114 0 3 chr12 6882624 6882930 -137399559 - AluSg SINE Alu -4 306 2 859 235 77 20 chr12 6883135 6883382 -137399107 - MIR SINE MIR 0 262 2 337 270 30 10 chr12 6883423 6883523 -137398966 - L2 LINE L2 -218 3054 2953 2168 93 3 29 chr12 6883593 6883906 -137398583 + AluSx SINE Alu 1 305 -7 507 282 109 15 chr12 6888311 6888513 -137393976 + MIR SINE MIR 23 243 -19 1161 141 39 0 chr12 6889423 6889629 -137392860 - L1MC1 LINE L1 -1 6332 6119 1161 153 124 0 chr12 6889634 6889875 -137392614 - L1MC1 LINE L1 -252 6081 5811 2140 95 7 0 chr12 6890758 6891054 -137391435 + AluSp SINE Alu 1 298 -15 1102 213 19 5 chr12 6891429 6891645 -137390844 + MER20 DNA MER1_type 1 219 0 226 329 130 28 chr12 6897956 6898172 -137384317 + MIR SINE MIR 15 252 -10 318 308 88 40 chr12 6898269 6898418 -137384071 + MIR SINE MIR 15 180 -82 1862 124 3 7 chr12 6898418 6898700 -137383789 + AluSx SINE Alu 15 295 -17 318 308 88 40 chr12 6898700 6898777 -137383712 + MIR SINE MIR 180 252 -10 1440 115 74 0 chr12 6900043 6900260 -137382229 + AluSg SINE Alu 1 233 -77 284 289 24 0 chr12 6901483 6901566 -137380923 - HsTC2 DNA Tc2 -1813 85 1 3695 91 13 58 chr12 6902499 6902919 -137379570 + MER1A DNA MER1_type 1 392 -2308 2268 84 7 0 chr12 6902919 6903218 -137379271 + AluSp SINE Alu 1 301 -12 3695 91 13 58 chr12 6903218 6903349 -137379140 + MER1A DNA MER1_type 392 527 0 2072 113 3 10 chr12 6903400 6903701 -137378788 - AluSx SINE Alu -13 299 1 2364 48 0 3 chr12 6904165 6904487 -137378002 + AluY SINE Alu 1 311 0 4272 158 5 30 chr12 6904492 6904647 -137377842 + MER44D DNA MER2_type 7 164 -2323 2380 53 0 10 chr12 6904647 6904947 -137377542 + AluY SINE Alu 2 298 -13 4272 158 5 30 chr12 6904947 6905534 -137376955 + MER44D DNA MER2_type 164 603 -2 2402 48 0 19 chr12 6905712 6906021 -137376468 - AluY SINE Alu -8 303 1 425 227 21 50 chr12 6906219 6906360 -137376129 - MIR SINE MIR 0 262 126 1342 175 90 11 chr12 6906360 6906658 -137375831 + AluJo SINE Alu 1 312 0 1202 193 155 19 chr12 6906667 6906932 -137375557 + AluJb SINE Alu 1 301 -1 281 229 24 0 chr12 6906936 6907019 -137375470 + GA-rich Low_complexity Low_complexity 4 88 0 306 292 0 26 chr12 6907030 6907143 -137375346 - MIR SINE MIR -133 129 20 249 200 46 15 chr12 6908730 6908795 -137373694 + GA-rich Low_complexity Low_complexity 5 71 0 1046 148 79 30 chr12 6912803 6913006 -137369483 + AluJb SINE Alu 72 284 -28 23 68 0 0 chr12 6914746 6914790 -137367699 + GC_rich Low_complexity Low_complexity 1 44 0 28 0 0 0 chr12 6915080 6915108 -137367381 + GC_rich Low_complexity Low_complexity 1 28 0 2159 81 7 10 chr12 6915577 6915873 -137366616 - AluSx SINE Alu -17 295 1 2226 131 7 0 chr12 6917093 6917398 -137365091 + AluSx SINE Alu 1 307 -5 2230 103 27 0 chr12 6917505 6917797 -137364692 - AluSx SINE Alu -12 300 1 1068 119 0 7 chr12 6917833 6917984 -137364505 - AluJo SINE Alu -3 309 160 580 162 0 36 chr12 6917985 6918096 -137364393 - AluJo SINE Alu -204 108 2 1607 124 142 47 chr12 6918189 6918357 -137364132 - AluSx SINE Alu -10 302 97 2533 61 0 3 chr12 6918357 6918651 -137363838 - AluY SINE Alu -18 293 1 1607 124 142 47 chr12 6918651 6918756 -137363733 - AluSx SINE Alu -215 97 3 294 233 213 64 chr12 6920581 6920783 -137361706 - MIR SINE MIR -24 238 7 2292 93 3 10 chr12 6921221 6921521 -137360968 - AluSx SINE Alu -12 300 3 1236 99 0 6 chr12 6923364 6923526 -137358963 + AluSg/x SINE Alu 138 298 -12 2318 76 7 7 chr12 6923671 6923961 -137358528 - AluSx SINE Alu -22 290 1 1873 131 6 85 chr12 6924385 6924578 -137357911 - AluJo SINE Alu -9 303 145 2172 133 3 0 chr12 6924578 6924872 -137357617 - AluSx SINE Alu -17 295 1 1873 131 6 85 chr12 6924872 6925007 -137357482 - AluJo SINE Alu -167 145 1 1680 115 99 0 chr12 6926207 6926450 -137356039 - AluSq SINE Alu -14 299 33 187 367 10 0 chr12 6926454 6926552 -137355937 + MIR SINE MIR 150 248 -14 2290 76 41 0 chr12 6927884 6928175 -137354314 + AluSq SINE Alu 1 303 -10 2277 71 34 17 chr12 6928177 6928472 -137354017 + AluSc SINE Alu 1 300 -9 602 124 29 109 chr12 6928523 6928660 -137353829 - FLAM_C SINE Alu -7 126 1 276 241 241 9 chr12 6929001 6929117 -137353372 - MIR SINE MIR -57 205 63 2067 91 34 47 chr12 6930776 6930915 -137351574 + AluSp SINE Alu 1 140 -173 2375 84 3 3 chr12 6930915 6931212 -137351277 + AluSq SINE Alu 5 301 -12 2067 91 34 47 chr12 6931212 6931370 -137351119 + AluSp SINE Alu 140 294 -19 2234 118 10 0 chr12 6931379 6931676 -137350813 + AluSx SINE Alu 1 300 -12 669 159 0 110 chr12 6931682 6931797 -137350692 + FLAM_A SINE Alu 1 98 -204 2121 78 17 34 chr12 6931797 6932092 -137350397 - AluSg SINE Alu -20 290 1 669 159 0 110 chr12 6932092 6932121 -137350368 + FLAM_A SINE Alu 98 129 -173 2172 118 10 0 chr12 6932974 6933262 -137349227 + AluSx SINE Alu 1 291 -21 21 36 0 0 chr12 6933275 6933303 -137349186 + AT_rich Low_complexity Low_complexity 1 28 0 296 388 55 0 chr12 6933460 6933715 -137348774 - L1ME3 LINE L1 -277 5885 5617 1361 222 54 13 chr12 6934081 6934396 -137348093 + MER58B DNA MER1_type 1 328 -13 2159 135 0 7 chr12 6934398 6934701 -137347788 + AluSx SINE Alu 1 301 -11 223 337 31 38 chr12 6934910 6935171 -137347318 + L2 LINE L2 2715 2973 -341 1032 154 178 65 chr12 6935282 6935313 -137347176 - AluJb SINE Alu -16 296 270 2281 99 0 0 chr12 6935313 6935607 -137346882 + AluSc SINE Alu 5 298 -11 1032 154 178 65 chr12 6935607 6935789 -137346700 - AluJb SINE Alu -42 270 59 817 83 9 0 chr12 6935838 6935947 -137346542 - AluSc SINE Alu -10 299 190 1091 151 0 0 chr12 6936174 6936333 -137346156 - AluSg/x SINE Alu -17 295 137 2044 141 13 10 chr12 6936369 6936675 -137345814 + AluSx SINE Alu 1 307 -5 1766 130 3 31 chr12 6938266 6938400 -137344089 + AluSx SINE Alu 2 138 -176 2141 83 66 21 chr12 6938400 6938535 -137343954 + AluSx SINE Alu 1 128 -184 2408 92 3 16 chr12 6938535 6938850 -137343639 + AluSx SINE Alu 1 311 -1 2141 83 66 21 chr12 6938850 6939003 -137343486 + AluSx SINE Alu 128 302 -10 2633 53 0 0 chr12 6939007 6939310 -137343179 + AluY SINE Alu 1 303 -8 1766 130 3 31 chr12 6939310 6939491 -137342998 + AluSx SINE Alu 141 314 0 2246 109 13 3 chr12 6939657 6939960 -137342529 + AluSp SINE Alu 1 306 -7 2064 139 7 0 chr12 6939960 6940261 -137342228 + AluSc SINE Alu 1 304 -5 1808 95 0 0 chr12 6941113 6941335 -137341154 - AluSq SINE Alu -91 222 1 238 210 0 0 chr12 6943203 6943265 -137339224 + L1ME LINE L1 5717 5778 -343 823 180 77 6 chr12 6943265 6943448 -137339041 - MER2 DNA MER2_type 0 345 150 217 254 51 0 chr12 6943463 6943522 -137338967 + (TATATG)n Simple_repeat Simple_repeat 3 64 0 1638 169 59 0 chr12 6943643 6943916 -137338573 - AluJb SINE Alu -23 289 1 25 31 0 0 chr12 6943949 6943981 -137338508 + AT_rich Low_complexity Low_complexity 1 32 0 2301 74 7 0 chr12 6944530 6944814 -137337675 - AluY SINE Alu -25 286 1 1613 90 0 5 chr12 6944833 6945034 -137337455 + AluSg/x SINE Alu 96 295 -17 2168 122 0 7 chr12 6945048 6945342 -137337147 + AluSx SINE Alu 1 292 -20 2257 84 0 11 chr12 6945349 6945636 -137336853 + AluY SINE Alu 1 284 -27 198 91 0 0 chr12 6945636 6945669 -137336820 + (CATA)n Simple_repeat Simple_repeat 2 34 0 1342 183 119 0 chr12 6945675 6945927 -137336562 + AluJo SINE Alu 1 282 -30 2150 136 3 0 chr12 6945927 6946228 -137336261 - AluSx SINE Alu -8 304 3 2267 114 0 7 chr12 6947728 6948027 -137334462 + AluSx SINE Alu 1 297 -15 1063 169 0 33 chr12 6948028 6948198 -137334291 + AluJo/FRAM SINE Alu 134 299 -13 1584 120 14 0 chr12 6948198 6948415 -137334074 + AluSq SINE Alu 1 220 -93 1063 169 0 33 chr12 6948415 6948428 -137334061 + AluJo/FRAM SINE Alu 299 311 -1 2398 216 59 32 chr12 6948432 6948719 -137333770 + L1MC4a LINE L1 7074 7352 -456 2389 94 0 0 chr12 6948719 6949017 -137333472 + AluSc SINE Alu 1 298 -11 2398 216 59 32 chr12 6949017 6949149 -137333340 + L1MC4a LINE L1 7352 7479 -329 2246 108 10 7 chr12 6949149 6949445 -137333044 + AluSx SINE Alu 1 297 -15 2398 216 59 32 chr12 6949445 6949740 -137332749 + L1MC4a LINE L1 7479 7808 0 1622 209 0 17 chr12 6949771 6950073 -137332416 + AluJo SINE Alu 3 299 -13 2590 71 0 3 chr12 6950075 6950384 -137332105 + AluSc SINE Alu 1 308 -1 184 250 0 0 chr12 6950408 6950448 -137332041 + MIR SINE MIR 63 102 -106 2437 79 3 0 chr12 6953076 6953367 -137329122 - AluSp SINE Alu -21 292 1 2374 82 0 50 chr12 6954722 6955041 -137327448 + AluSq SINE Alu 1 303 -10 1135 155 0 0 chr12 6955043 6955211 -137327278 + AluSc SINE Alu 134 301 -8 1921 109 7 63 chr12 6955600 6955750 -137326739 + AluSx SINE Alu 1 126 -185 2432 82 0 0 chr12 6955750 6956043 -137326446 + AluSx SINE Alu 1 293 -19 1921 109 7 63 chr12 6956043 6956220 -137326269 + AluSx SINE Alu 126 311 0 2183 103 22 22 chr12 6956220 6956531 -137325958 + AluY SINE Alu 1 311 0 710 253 0 0 chr12 6956552 6956706 -137325783 + FRAM SINE Alu 1 154 -22 2265 104 3 10 chr12 6956713 6957022 -137325467 + AluSx SINE Alu 1 307 -5 2340 88 0 3 chr12 6957761 6958056 -137324433 + AluSc SINE Alu 1 294 -15 403 134 30 0 chr12 6958107 6958174 -137324315 - MER46A DNA MER2_type 0 236 168 264 148 37 0 chr12 6958144 6958198 -137324291 + MER46A DNA MER2_type 99 154 -82 * 1510 194 0 48 chr12 6958387 6958701 -137323788 + AluJo SINE Alu 6 304 -8 198 0 0 0 chr12 6961211 6961233 -137321256 + (TCC)n Simple_repeat Simple_repeat 3 24 0 2241 105 14 0 chr12 6963231 6963526 -137318963 + AluSx SINE Alu 4 302 -10 241 268 32 16 chr12 6965897 6966020 -137316469 + (CGGGG)n Simple_repeat Simple_repeat 4 128 0 473 0 18 0 chr12 6966904 6966961 -137315528 + (CA)n Simple_repeat Simple_repeat 2 59 0 2165 112 3 0 chr12 6968968 6969271 -137313218 + AluSg SINE Alu 1 304 -6 1365 148 103 8 chr12 6969405 6969648 -137312841 - AluJb SINE Alu 0 312 47 2477 56 3 0 chr12 6969660 6969965 -137312524 - AluSp SINE Alu -7 306 1 208 153 0 34 chr12 6972177 6972236 -137310253 + C-rich Low_complexity Low_complexity 2 58 0 267 275 0 54 chr12 6973371 6973520 -137308969 + CT-rich Low_complexity Low_complexity 2 142 0 485 272 31 43 chr12 6973900 6974062 -137308427 - MIR SINE MIR -75 187 28 2147 118 0 0 chr12 6974352 6974657 -137307832 + AluSx SINE Alu 1 305 -7 464 82 0 0 chr12 6974662 6974723 -137307766 + Alu SINE Alu 2 62 -248 1225 186 8 35 chr12 6974845 6975103 -137307386 - AluSx SINE Alu -61 251 1 2070 123 16 0 chr12 6975116 6975424 -137307065 - AluSq SINE Alu 0 313 1 2193 116 0 3 chr12 6976632 6976943 -137305546 - AluSg SINE Alu 0 310 1 234 252 118 34 chr12 6977078 6977197 -137305292 - L3b LINE CR1 -146 1437 1309 2222 92 0 10 chr12 6978080 6978385 -137304104 - AluSq SINE Alu -11 302 1 1333 104 0 120 chr12 6978644 6978687 -137303802 + AluJo SINE Alu 85 132 -180 2145 98 0 0 chr12 6978687 6978973 -137303516 - AluSc SINE Alu -20 289 4 1333 104 0 120 chr12 6978973 6979004 -137303485 + AluJo SINE Alu 132 165 -147 1683 137 10 64 chr12 6979004 6979317 -137303172 + AluSx SINE Alu 1 296 -16 1333 104 0 120 chr12 6979317 6979478 -137303011 + AluJo SINE Alu 165 292 -20 2273 110 0 0 chr12 6979478 6979787 -137302702 + AluSg1 SINE Alu 1 309 0 1333 104 0 120 chr12 6979787 6979799 -137302690 + AluJo SINE Alu 292 304 -8 199 222 93 0 chr12 6979974 6980028 -137302461 - MIR3 SINE MIR -19 189 131 261 0 0 0 chr12 6980628 6980657 -137301832 + (GGCTG)n Simple_repeat Simple_repeat 5 33 0 283 227 147 0 chr12 6981326 6981401 -137301088 + MER103 DNA DNA 8 93 -73 259 195 85 24 chr12 6981409 6981491 -137300998 + L1MC5 LINE L1 7820 7906 -55 2077 99 0 11 chr12 6981616 6981922 -137300567 + AluSg SINE Alu 1 303 0 1744 159 0 3 chr12 6982021 6982311 -137300178 + AluJb SINE Alu 22 310 -2 254 327 73 42 chr12 6983226 6983391 -137299098 - MIR3 SINE MIR -21 187 18 315 253 0 13 chr12 6984439 6984518 -137297971 - MIR SINE MIR -101 107 30 546 301 52 16 chr12 6985338 6985587 -137296902 + L2 LINE L2 2127 2384 -930 665 299 33 29 chr12 6985587 6985828 -137296661 - MIR SINE MIR 0 262 21 754 146 31 23 chr12 6986439 6986569 -137295920 + FLAM_C SINE Alu 2 132 -11 311 313 27 33 chr12 6986579 6986729 -137295760 + L2 LINE L2 2915 3063 -209 471 77 0 44 chr12 6986950 6987041 -137295448 - L1M4 LINE L1 -1093 5053 4967 271 290 270 0 chr12 6987122 6987322 -137295167 - L1M4 LINE L1 -1160 4986 4733 1885 134 0 20 chr12 6987640 6987938 -137294551 + AluJo SINE Alu 1 292 -20 487 277 22 0 chr12 6988463 6988600 -137293889 - MIR3 SINE MIR -33 175 36 294 333 0 0 chr12 6989021 6989117 -137293372 + CT-rich Low_complexity Low_complexity 3 98 0 2516 59 0 0 chr12 6990324 6990630 -137291859 - AluY SINE Alu -5 306 1 2055 110 0 39 chr12 6990633 6990942 -137291547 - AluSx SINE Alu -15 297 1 2280 77 3 3 chr12 6992257 6992554 -137289935 - AluSc SINE Alu -12 297 1 1071 88 0 0 chr12 6992554 6992690 -137289799 - AluSq/x SINE Alu -176 136 1 422 285 83 7 chr12 6992691 6992835 -137289654 - MIR SINE MIR -48 214 60 1344 150 0 26 chr12 6993055 6993288 -137289201 + AluJb SINE Alu 85 311 -1 1757 133 7 18 chr12 6993303 6993623 -137288866 + AluJb SINE Alu 1 317 0 716 142 0 0 chr12 6993627 6993733 -137288756 + AluSq/x SINE Alu 3 108 -204 2246 99 3 0 chr12 6993735 6994039 -137288450 + AluY SINE Alu 1 305 -6 1363 139 102 16 chr12 6994173 6994417 -137288072 - AluJb SINE Alu -1 311 47 2434 56 7 0 chr12 6994429 6994733 -137287756 - AluSp SINE Alu -7 306 1 208 153 0 34 chr12 6996944 6997003 -137285486 + C-rich Low_complexity Low_complexity 2 58 0 267 275 0 54 chr12 6998138 6998287 -137284202 + CT-rich Low_complexity Low_complexity 2 142 0 485 272 31 43 chr12 6998667 6998829 -137283660 - MIR SINE MIR -75 187 28 2147 118 0 0 chr12 6999119 6999424 -137283065 + AluSx SINE Alu 1 305 -7 2128 106 0 7 chr12 6999428 6999731 -137282758 + AluSc SINE Alu 1 301 -8 222 305 168 18 chr12 7000266 7000433 -137282056 + MIR SINE MIR 20 211 -51 2297 85 3 0 chr12 7000481 7000786 -137281703 + AluSq SINE Alu 1 306 -7 200 263 58 109 chr12 7001068 7001205 -137281284 + L2 LINE L2 2586 2715 -599 756 167 19 119 chr12 7001354 7001564 -137280925 - L2 LINE L2 -1 3312 3124 281 158 12 0 chr12 7001994 7002076 -137280413 + (CA)n Simple_repeat Simple_repeat 2 84 0 2029 112 17 3 chr12 7002246 7002542 -137279947 + AluSx SINE Alu 1 300 -12 1071 142 78 34 chr12 7002952 7003156 -137279333 + Charlie1 DNA MER1_type 5 217 -2544 550 147 101 0 chr12 7003156 7003285 -137279204 + Charlie1 DNA MER1_type 2620 2761 0 358 57 80 11 chr12 7003323 7003411 -137279078 + GA-rich Low_complexity Low_complexity 1 94 0 257 266 18 83 chr12 7005600 7005709 -137276780 + MIR SINE MIR 1 102 -160 1467 168 6 78 chr12 7005714 7005845 -137276644 + AluJb SINE Alu 1 140 -172 2248 102 0 0 chr12 7005845 7006140 -137276349 + AluSq SINE Alu 1 295 -18 2317 85 0 13 chr12 7006141 7006457 -137276032 + AluSq SINE Alu 1 312 -1 2032 101 29 16 chr12 7006466 7006773 -137275716 + AluSx SINE Alu 1 311 -1 1467 168 6 78 chr12 7006773 7006950 -137275539 + AluJb SINE Alu 148 298 -14 2052 119 7 0 chr12 7006957 7007250 -137275239 + AluSx SINE Alu 1 295 -17 1849 182 0 0 chr12 7007257 7007559 -137274930 + AluSx SINE Alu 7 308 -4 291 239 162 8 chr12 7007648 7007765 -137274724 - L2 LINE L2 -21 3292 3158 822 133 7 0 chr12 7007848 7007983 -137274506 + AluSg/x SINE Alu 171 306 -6 297 164 0 33 chr12 7008093 7008154 -137274335 + MIR SINE MIR 119 177 -85 241 108 0 0 chr12 7008271 7008332 -137274157 + Alu SINE Alu 251 311 0 1881 154 54 42 chr12 7008340 7008605 -137273884 - L1MB4 LINE L1 -87 6093 5820 2335 76 3 10 chr12 7008605 7008919 -137273570 - AluSp SINE Alu -1 312 1 1881 154 54 42 chr12 7008919 7009062 -137273427 - L1MB4 LINE L1 -360 5820 5680 2331 64 14 0 chr12 7009143 7009438 -137273051 + AluY SINE Alu 1 299 -12 2155 88 10 7 chr12 7009439 7009736 -137272753 + AluY SINE Alu 1 298 -13 1546 186 9 40 chr12 7009788 7009985 -137272504 - AluJo SINE Alu 0 312 127 2127 103 0 17 chr12 7009985 7010286 -137272203 + AluSx SINE Alu 1 296 -16 1546 186 9 40 chr12 7010286 7010410 -137272079 - AluJo SINE Alu -185 127 1 447 325 55 65 chr12 7010597 7010982 -137271507 + L2 LINE L2 2837 3217 -55 658 170 0 0 chr12 7011199 7011305 -137271184 + AluSg/x SINE Alu 191 296 -14 2149 88 10 3 chr12 7011307 7011603 -137270886 + AluSq SINE Alu 1 298 -15 2367 81 0 0 chr12 7012007 7012317 -137270172 - AluY SINE Alu -1 310 1 1888 113 0 31 chr12 7012444 7012624 -137269865 - AluSx SINE Alu -3 309 140 2352 79 3 3 chr12 7012624 7012929 -137269560 - AluSp SINE Alu -8 305 1 1888 113 0 31 chr12 7012929 7013040 -137269449 - AluSx SINE Alu -172 140 27 264 68 25 29 chr12 7013160 7013212 -137269277 - AluSx SINE Alu -262 38 1 737 252 40 17 chr12 7013214 7013401 -137269088 + L1MEc LINE L1 2315 2470 -3745 1971 107 47 10 chr12 7013401 7013699 -137268790 + AluSx SINE Alu 1 309 -3 737 252 40 17 chr12 7013699 7013791 -137268698 + L1MEc LINE L1 2470 2558 -3657 1537 115 0 5 chr12 7013791 7014008 -137268481 + AluSx SINE Alu 1 216 -96 4844 61 3 12 chr12 7014008 7014650 -137267839 + LTR13 LTR ERVK 372 1007 0 1257 199 127 8 chr12 7014663 7014930 -137267559 - AluJo SINE Alu -2 300 2 227 248 120 86 chr12 7015000 7015117 -137267372 + MIR3 SINE MIR 47 167 -41 195 211 0 58 chr12 7015202 7015254 -137267235 + L3 LINE CR1 1516 1564 -13 2370 121 30 30 chr12 7015446 7015810 -137266679 + THE1B LTR MaLR 1 364 0 2229 73 0 30 chr12 7015855 7016155 -137266334 - AluY SINE Alu -17 294 4 2169 99 10 0 chr12 7016570 7016864 -137265625 + AluSx SINE Alu 1 297 -15 260 296 68 38 chr12 7017898 7018030 -137264459 - MIR3 SINE MIR -64 144 9 330 204 93 37 chr12 7018614 7018722 -137263767 - MIR3 SINE MIR -82 126 13 2090 108 30 0 chr12 7018812 7019107 -137263382 + AluSx SINE Alu 1 304 -8 2136 96 0 45 chr12 7021549 7021862 -137260627 + AluSg SINE Alu 1 299 -11 1523 105 113 4 chr12 7023334 7023573 -137258916 - AluSx SINE Alu -9 303 39 2157 118 7 0 chr12 7026891 7027197 -137255292 + AluSg SINE Alu 1 308 -2 1053 135 35 6 chr12 7027197 7027367 -137255122 + AluSg/x SINE Alu 134 308 -4 809 129 0 24 chr12 7027530 7027654 -137254835 - AluJb SINE Alu -191 121 1 2187 97 3 34 chr12 7027731 7028052 -137254437 + AluSx SINE Alu 1 311 -1 1717 145 99 0 chr12 7028057 7028339 -137254150 + AluJo SINE Alu 1 310 -2 209 200 11 53 chr12 7028491 7028586 -137253903 + CT-rich Low_complexity Low_complexity 1 91 0 2456 50 13 3 chr12 7028586 7028886 -137253603 - AluY SINE Alu -8 303 1 304 354 130 5 chr12 7028887 7028981 -137253508 - HAL1 LINE L1 -1218 1289 1208 2108 112 16 16 chr12 7028981 7029293 -137253196 - AluSp SINE Alu -1 312 1 304 354 130 5 chr12 7029293 7029390 -137253099 - HAL1 LINE L1 -1299 1208 1074 246 95 0 0 chr12 7029888 7029930 -137252559 + (TAAA)n Simple_repeat Simple_repeat 1 42 0 461 227 63 66 chr12 7029932 7030184 -137252305 - L2 LINE L2 -14 3258 2938 1015 95 0 7 chr12 7030184 7030321 -137252168 + AluJb SINE Alu 1 136 -176 2244 81 3 32 chr12 7030321 7030631 -137251858 + AluY SINE Alu 1 301 -10 1312 217 195 49 chr12 7030635 7031087 -137251402 - L2 LINE L2 -366 2948 2431 1514 127 26 138 chr12 7031388 7031735 -137250754 + AluYb8 SINE Alu 1 308 0 219 284 45 11 chr12 7031754 7031842 -137250647 - L2 LINE L2 -454 2860 2770 185 324 14 14 chr12 7031886 7031957 -137250532 - L2 LINE L2 -1 3271 3201 197 338 44 66 chr12 7032158 7032386 -137250103 - L2 LINE L2 -940 2374 2152 1112 109 65 45 chr12 7032752 7032810 -137249679 - MER3 DNA MER1_type -4 205 150 2200 79 0 4 chr12 7032810 7033111 -137249378 + AluSc SINE Alu 1 300 0 1112 109 65 45 chr12 7033111 7033123 -137249366 - MER3 DNA MER1_type -59 150 140 2051 101 3 41 chr12 7033123 7033459 -137249030 + AluSx SINE Alu 1 312 0 1112 109 65 45 chr12 7033459 7033587 -137248902 - MER3 DNA MER1_type -69 140 1 2100 128 0 0 chr12 7033734 7034032 -137248457 + AluSg SINE Alu 1 298 -12 1585 155 61 4 chr12 7034101 7034378 -137248111 + AluJb SINE Alu 8 300 -12 2093 133 3 0 chr12 7034938 7035240 -137247249 + AluSx SINE Alu 1 303 -9 234 298 6 37 chr12 7036726 7036887 -137245602 + GA-rich Low_complexity Low_complexity 5 160 0 21 36 0 0 chr12 7037137 7037165 -137245324 + AT_rich Low_complexity Low_complexity 1 28 0 186 167 0 64 chr12 7038326 7038404 -137244085 + C-rich Low_complexity Low_complexity 1 73 0 258 105 0 0 chr12 7038691 7038729 -137243760 + (CCG)n Simple_repeat Simple_repeat 3 40 0 26 64 0 0 chr12 7038778 7038825 -137243664 + GC_rich Low_complexity Low_complexity 1 47 0 30 97 0 0 chr12 7038876 7038969 -137243520 + GC_rich Low_complexity Low_complexity 1 93 0 23 0 0 0 chr12 7039718 7039741 -137242748 + GC_rich Low_complexity Low_complexity 1 23 0 213 324 0 0 chr12 7041733 7041801 -137240688 + GA-rich Low_complexity Low_complexity 1 68 0 335 287 10 0 chr12 7042044 7042145 -137240344 + GA-rich Low_complexity Low_complexity 3 104 0 386 224 197 14 chr12 7043961 7044108 -137238381 + MIR SINE MIR 86 259 -3 180 273 109 0 chr12 7048603 7048658 -137233831 - MIR SINE MIR -162 100 40 804 161 0 22 chr12 7049085 7049222 -137233267 + AluJb SINE Alu 1 134 -178 370 250 76 18 chr12 7049758 7049896 -137232593 + MIR SINE MIR 45 200 -8 237 313 0 0 chr12 7050296 7050363 -137232126 + CT-rich Low_complexity Low_complexity 2 68 0 201 132 0 0 chr12 7050740 7050778 -137231711 + (TC)n Simple_repeat Simple_repeat 1 38 0 381 131 0 0 chr12 7051006 7051067 -137231422 + (CA)n Simple_repeat Simple_repeat 1 61 0 406 218 156 5 chr12 7051555 7051695 -137230794 + MIR SINE MIR 34 191 -63 1899 169 0 7 chr12 7052430 7052732 -137229757 + AluJb SINE Alu 1 300 -12 242 200 0 62 chr12 7053374 7053439 -137229050 - MLT1F LTR MaLR 0 542 482 714 202 0 0 chr12 7053439 7053558 -137228931 + AluJo SINE Alu 1 119 -193 1346 96 0 0 chr12 7053558 7053735 -137228754 - AluSg/x SINE Alu -15 295 119 23 0 0 0 chr12 7053736 7053759 -137228730 + AT_rich Low_complexity Low_complexity 1 23 0 2140 82 0 14 chr12 7053759 7054052 -137228437 - AluY SINE Alu -22 289 1 888 235 0 0 chr12 7054073 7054260 -137228229 + AluJo SINE Alu 124 310 -2 1256 288 70 21 chr12 7054277 7054704 -137227785 - MLT1F LTR MaLR -92 450 3 215 261 120 43 chr12 7055722 7055814 -137226675 + MIR SINE MIR 118 216 -46 1906 161 0 27 chr12 7055958 7056287 -137226202 - 7SLRNA srpRNA srpRNA 0 320 1 1006 99 0 0 chr12 7056326 7056457 -137226032 - AluY SINE Alu -180 131 1 473 273 25 61 chr12 7056512 7056596 -137225893 + MIR SINE MIR 33 118 -144 1675 186 3 7 chr12 7056596 7056892 -137225597 + AluJo SINE Alu 1 295 -17 473 273 25 61 chr12 7056892 7057005 -137225484 + MIR SINE MIR 118 223 -39 2337 93 0 0 chr12 7057566 7057878 -137224611 + AluSx SINE Alu 1 312 0 727 174 82 51 chr12 7057893 7058041 -137224448 + L1MB3 LINE L1 5978 6135 -48 2330 96 0 0 chr12 7058041 7058342 -137224147 + AluSx SINE Alu 1 301 -11 727 174 82 51 chr12 7058342 7058388 -137224101 + L1MB3 LINE L1 6135 6178 -5 21 36 0 0 chr12 7058388 7058416 -137224073 + AT_rich Low_complexity Low_complexity 1 28 0 294 274 53 11 chr12 7058423 7058518 -137223971 - L2 LINE L2 -8 3264 3166 618 259 30 35 chr12 7058632 7058864 -137223625 + MLT1J LTR MaLR 279 509 -2 323 286 179 12 chr12 7058924 7059092 -137223397 + L2 LINE L2 3117 3312 -1 726 281 58 8 chr12 7059178 7059420 -137223069 - MLT1J LTR MaLR -242 269 16 1287 154 27 64 chr12 7059464 7059762 -137222727 + Charlie1a DNA MER1_type 1 287 -1168 690 251 25 33 chr12 7059762 7060005 -137222484 + AluSq SINE Alu 1 241 -72 2168 109 0 6 chr12 7060459 7060771 -137221718 + AluY SINE Alu 1 310 -1 355 113 0 0 chr12 7060780 7060833 -137221656 + AluJb SINE Alu 1 53 -249 1212 88 26 5 chr12 7060857 7061050 -137221439 + LTR3b LTR ERVK 304 500 0 1415 178 0 20 chr12 7061051 7061304 -137221185 + AluJb SINE Alu 50 297 -15 697 153 0 0 chr12 7061354 7061465 -137221024 - AluSx SINE Alu -2 310 200 891 76 30 15 chr12 7061465 7061597 -137220892 - AluSx SINE Alu -175 138 5 2314 82 20 0 chr12 7061618 7061923 -137220566 - AluY SINE Alu 0 311 1 1083 111 0 12 chr12 7061923 7062075 -137220414 - AluSq SINE Alu -15 298 147 6391 154 196 20 chr12 7062075 7063516 -137218973 + pTR5 LTR ERV1 743 2437 -1 577 152 0 50 chr12 7063516 7063537 -137218952 - AluSg SINE Alu -158 152 131 1914 138 14 3 chr12 7063537 7063834 -137218655 - AluSq SINE Alu -13 300 1 577 152 0 50 chr12 7063834 7063911 -137218578 - AluSg SINE Alu -179 131 59 991 128 27 0 chr12 7063923 7064071 -137218418 - AluSx SINE Alu -159 153 2 692 145 8 0 chr12 7064098 7064215 -137218274 - FLAM_A SINE Alu 0 142 25 351 273 28 21 chr12 7064218 7064361 -137218128 - L1 LINE L1 -2452 3694 3551 1968 119 24 0 chr12 7064407 7064700 -137217789 + AluSq SINE Alu 1 300 -13 2320 99 0 0 chr12 7064705 7065008 -137217481 + AluSx SINE Alu 1 303 -9 2224 93 0 7 chr12 7065013 7065315 -137217174 + AluY SINE Alu 1 300 -11 1164 119 11 0 chr12 7065316 7065493 -137216996 + AluSg/x SINE Alu 132 310 0 709 174 8 30 chr12 7065501 7065633 -137216856 - FLAM_C SINE Alu -1 132 4 1414 261 133 23 chr12 7065633 7065727 -137216762 + L2 LINE L2 2449 2531 -782 2042 133 3 0 chr12 7065727 7066021 -137216468 + AluSx SINE Alu 1 295 -17 222 37 0 0 chr12 7066022 7066049 -137216440 + (CATA)n Simple_repeat Simple_repeat 2 28 0 1414 261 133 23 chr12 7066049 7066633 -137215856 + L2 LINE L2 2530 3227 -86 187 250 143 0 chr12 7066771 7066827 -137215662 + L2 LINE L2 3209 3272 0 343 275 22 33 chr12 7066902 7067084 -137215405 + CT-rich Low_complexity Low_complexity 1 180 0 339 341 117 11 chr12 7067085 7067264 -137215225 - MIR3 SINE MIR -5 203 6 2106 138 0 40 chr12 7067292 7067617 -137214872 - AluSx SINE Alu 0 312 1 2052 133 0 37 chr12 7067624 7067948 -137214541 - AluSx SINE Alu 0 312 1 364 333 82 7 chr12 7067972 7068119 -137214370 + MIR SINE MIR 34 191 -71 2228 109 7 0 chr12 7068133 7068435 -137214054 + AluSg SINE Alu 1 304 -6 653 111 0 0 chr12 7068444 7068543 -137213946 + AluJ/FRAM SINE Alu 214 312 0 2651 46 3 0 chr12 7068653 7068959 -137213530 + AluY SINE Alu 1 307 -4 213 257 40 14 chr12 7069061 7069135 -137213354 + CT-rich Low_complexity Low_complexity 3 78 0 266 224 188 0 chr12 7069274 7069359 -137213130 + MIR SINE MIR 96 196 -66 213 294 0 0 chr12 7069529 7069580 -137212909 + MIR SINE MIR 95 145 -63 235 197 158 0 chr12 7069704 7069780 -137212709 + MIR SINE MIR 175 262 0 236 246 121 95 chr12 7071258 7071378 -137211111 + MIR3 SINE MIR 14 146 -116 2474 79 0 3 chr12 7071378 7071683 -137210806 - AluY SINE Alu -7 304 1 236 246 121 95 chr12 7071683 7071771 -137210718 + MIR3 SINE MIR 146 230 -32 1173 183 134 15 chr12 7072135 7072259 -137210230 + AluSx SINE Alu 1 109 -193 2027 97 93 0 chr12 7072259 7072538 -137209951 + AluY SINE Alu 1 305 -6 2192 96 0 26 chr12 7072541 7072869 -137209620 + AluSg SINE Alu 1 310 0 1173 183 134 15 chr12 7072869 7073008 -137209481 + AluSx SINE Alu 110 300 -2 221 320 40 30 chr12 7073046 7073146 -137209343 - L2 LINE L2 -61 3252 3152 2460 93 0 0 chr12 7073284 7073586 -137208903 + AluSx SINE Alu 1 302 -10 190 362 35 17 chr12 7073899 7074015 -137208474 - L2 LINE L2 -270 3002 2885 1539 190 4 7 chr12 7076272 7076546 -137205943 - AluJo SINE Alu -39 273 1 222 37 0 0 chr12 7077190 7077217 -137205272 + (TC)n Simple_repeat Simple_repeat 2 28 0 1961 119 42 7 chr12 7078288 7078574 -137203915 + AluSx SINE Alu 1 296 -16 2375 75 3 3 chr12 7078574 7078867 -137203622 + AluY SINE Alu 1 293 -18 2369 95 0 0 chr12 7079327 7079623 -137202866 + AluSc SINE Alu 1 296 -13 23 33 0 0 chr12 7079768 7079798 -137202691 + AT_rich Low_complexity Low_complexity 1 30 0 2151 110 10 0 chr12 7079809 7080100 -137202389 + AluSc SINE Alu 5 298 -11 2260 129 0 0 chr12 7081371 7081674 -137200815 - AluSx SINE Alu -9 303 1 2225 113 0 26 chr12 7081681 7081992 -137200497 - AluSx SINE Alu -9 303 1 1537 149 108 11 chr12 7083701 7083969 -137198520 - AluJb SINE Alu -18 294 1 292 196 9 103 chr12 7083976 7084083 -137198406 - FLAM_A SINE Alu -8 125 29 1774 147 13 42 chr12 7084158 7084470 -137198019 - AluJb SINE Alu -9 303 1 2194 119 0 0 chr12 7084563 7084857 -137197632 - AluSx SINE Alu -18 294 1 2299 123 0 0 chr12 7084866 7085176 -137197313 - AluSx SINE Alu -2 310 1 214 211 0 0 chr12 7085789 7085827 -137196662 + T-rich Low_complexity Low_complexity 1 38 0 2131 121 16 22 chr12 7085989 7086303 -137196186 - AluSx SINE Alu 0 312 1 1983 149 3 3 chr12 7086704 7086999 -137195490 + AluSx SINE Alu 1 295 -17 2341 79 0 0 chr12 7087000 7087311 -137195178 + AluY SINE Alu 1 311 0 2355 102 3 0 chr12 7087483 7087778 -137194711 + AluSg SINE Alu 2 297 -13 475 109 0 0 chr12 7087924 7087988 -137194501 - AluS SINE Alu -238 75 12 460 250 79 95 chr12 7088025 7088143 -137194346 + L2 LINE L2 2584 2702 -570 2053 138 3 3 chr12 7088143 7088455 -137194034 + AluSx SINE Alu 1 312 0 460 250 79 95 chr12 7088455 7088790 -137193699 + L2 LINE L2 2702 3039 -233 1108 200 33 9 chr12 7088883 7089098 -137193391 + AluJo SINE Alu 1 220 -92 1088 122 0 0 chr12 7089120 7089267 -137193222 + AluSg/x SINE Alu 157 303 -9 2493 70 0 3 chr12 7089270 7089572 -137192917 + AluY SINE Alu 1 301 -10 563 237 14 14 chr12 7089577 7089716 -137192773 + FLAM_A SINE Alu 4 142 0 298 304 0 11 chr12 7089758 7089850 -137192639 + L2 LINE L2 3182 3272 0 849 154 0 0 chr12 7089920 7090043 -137192446 + FLAM_C SINE Alu 2 124 -9 25 0 0 0 chr12 7090043 7090068 -137192421 + AT_rich Low_complexity Low_complexity 1 25 0 2236 129 3 0 chr12 7090068 7090405 -137192084 + AluSx SINE Alu 1 338 0 189 282 237 15 chr12 7090416 7090547 -137191942 + L2 LINE L2 1833 1992 -1322 1866 119 90 4 chr12 7090557 7090834 -137191655 - AluSq SINE Alu -12 301 1 2399 99 0 0 chr12 7090834 7091137 -137191352 - AluSg SINE Alu -7 303 1 2122 123 0 43 chr12 7091144 7091470 -137191019 - AluSx SINE Alu 0 312 1 744 282 68 82 chr12 7091869 7092224 -137190265 + L2 LINE L2 2921 3270 -2 2307 109 3 3 chr12 7093587 7093889 -137188600 - AluSp SINE Alu -11 302 1 266 156 234 0 chr12 7094564 7094641 -137187848 + MIR SINE MIR 99 193 -69 677 238 43 5 chr12 7094990 7095175 -137187314 - AluSq SINE Alu 0 313 122 1305 227 18 7 chr12 7095183 7095469 -137187020 - AluSq SINE Alu -24 289 1 1314 214 30 47 chr12 7095472 7095632 -137186857 - AluJo SINE Alu -18 294 140 2080 119 7 4 chr12 7095632 7095910 -137186579 - AluSq SINE Alu -34 279 1 1314 214 30 47 chr12 7095910 7096048 -137186441 - AluJo SINE Alu -172 140 1 2332 93 16 19 chr12 7096717 7096891 -137185598 - AluSx SINE Alu 0 312 138 2223 124 0 3 chr12 7096891 7097198 -137185291 - AluSg SINE Alu -4 306 1 2332 93 16 19 chr12 7097198 7097336 -137185153 - AluSx SINE Alu -174 138 1 227 189 38 19 chr12 7097363 7097416 -137185073 - MIR3 SINE MIR -31 177 124 195 100 0 0 chr12 7098107 7098137 -137184352 + (A)n Simple_repeat Simple_repeat 1 30 0 195 69 0 0 chr12 7098279 7098308 -137184181 + (TA)n Simple_repeat Simple_repeat 2 30 0 393 22 0 0 chr12 7099371 7099417 -137183072 + (CTG)n Simple_repeat Simple_repeat 1 46 0 225 279 0 0 chr12 7099429 7099497 -137182992 + (CTGGGG)n Simple_repeat Simple_repeat 2 69 0 215 146 0 24 chr12 7099496 7099537 -137182952 + (CTG)n Simple_repeat Simple_repeat 1 40 0 * 2293 118 0 16 chr12 7099890 7100205 -137182284 + AluSx SINE Alu 1 310 -2 399 254 25 51 chr12 7100890 7100968 -137181521 + Charlie1b DNA MER1_type 1 77 -446 2184 106 3 16 chr12 7100968 7101271 -137181218 - AluSx SINE Alu -13 299 1 399 254 25 51 chr12 7101271 7101310 -137181179 + Charlie1b DNA MER1_type 77 115 -408 503 167 71 0 chr12 7101310 7101394 -137181095 + AluSg/x SINE Alu 196 285 -27 237 159 0 0 chr12 7101394 7101438 -137181051 + (CA)n Simple_repeat Simple_repeat 1 44 0 1158 171 115 67 chr12 7101519 7101616 -137180873 + Charlie1b DNA MER1_type 149 240 -2521 1726 178 7 3 chr12 7101616 7101908 -137180581 + AluJo SINE Alu 2 294 -18 1158 171 115 67 chr12 7101908 7102166 -137180323 + Charlie1b DNA MER1_type 240 521 -2 183 143 0 0 chr12 7104108 7104143 -137178346 + L2 LINE L2 501 535 -2779 313 346 0 0 chr12 7105041 7105122 -137177367 + L2 LINE L2 3191 3271 -1 196 167 76 61 chr12 7105443 7105509 -137176980 - MER5A DNA MER1_type -23 166 100 233 262 252 37 chr12 7106130 7106237 -137176252 + MIR SINE MIR 21 150 -58 23 0 0 0 chr12 7106555 7106578 -137175911 + AT_rich Low_complexity Low_complexity 1 23 0 393 300 132 11 chr12 7106699 7106889 -137175600 - MIR SINE MIR -1 261 49 266 254 36 0 chr12 7106892 7106947 -137175542 + L3 LINE CR1 1432 1488 -89 2293 81 7 10 chr12 7107488 7107783 -137174706 + AluSx SINE Alu 2 295 -17 604 238 37 6 chr12 7108518 7108682 -137173807 - MIR SINE MIR -45 217 49 449 235 35 35 chr12 7110198 7110313 -137172176 + L2 LINE L2 3193 3307 -6 1577 178 63 14 chr12 7111447 7111734 -137170755 - AluJb SINE Alu -11 301 1 2227 114 7 0 chr12 7111836 7112133 -137170356 + AluSq SINE Alu 1 299 -14 2268 88 27 7 chr12 7112404 7112699 -137169790 + AluSq SINE Alu 1 301 -12 1276 201 10 102 chr12 7113479 7113783 -137168706 + AluJo SINE Alu 1 276 -36 513 0 0 0 chr12 7113789 7113846 -137168643 + (CAAAA)n Simple_repeat Simple_repeat 1 57 0 1569 183 67 0 chr12 7113854 7114139 -137168350 + AluJb SINE Alu 9 312 0 2156 105 7 0 chr12 7114482 7114793 -137167696 + AluSx SINE Alu 5 317 0 1865 156 57 0 chr12 7114865 7115148 -137167341 + AluSx SINE Alu 1 299 -13 2172 127 0 0 chr12 7115199 7115490 -137166999 + AluSg SINE Alu 1 291 -19 682 203 198 6 chr12 7115514 7115696 -137166793 - MIR SINE MIR -1 261 45 249 121 0 0 chr12 7116287 7116320 -137166169 + MER91 DNA MER1_type 73 105 -35 1889 146 0 0 chr12 7116540 7116820 -137165669 + AluJo SINE Alu 33 312 0 2197 108 6 19 chr12 7116967 7117281 -137165208 + AluSx SINE Alu 2 311 -1 2265 122 0 0 chr12 7117736 7118030 -137164459 - AluSx SINE Alu -18 294 1 341 267 219 0 chr12 7121563 7121750 -137160739 + L2 LINE L2 3085 3312 -1 2280 93 3 3 chr12 7122096 7122396 -137160093 - AluSq SINE Alu -12 301 2 200 228 43 57 chr12 7122400 7122510 -137159979 - MIR SINE MIR -63 145 65 1133 93 0 0 chr12 7122885 7123025 -137159464 + AluSp/q SINE Alu 164 303 -10 22 0 0 0 chr12 7123684 7123706 -137158783 + AT_rich Low_complexity Low_complexity 1 22 0 371 270 20 53 chr12 7125388 7125540 -137156949 + GA-rich Low_complexity Low_complexity 5 151 0 185 258 76 0 chr12 7128427 7128493 -137153996 + L2 LINE L2 2993 3063 -209 264 193 241 0 chr12 7128585 7128668 -137153821 + L2 LINE L2 3133 3235 -37 2347 109 0 0 chr12 7130442 7130744 -137151745 + AluSq SINE Alu 1 302 -11 257 312 5 58 chr12 7131014 7131203 -137151286 + GA-rich Low_complexity Low_complexity 2 180 0 265 229 0 43 chr12 7131330 7131400 -137151089 + GA-rich Low_complexity Low_complexity 4 70 0 227 206 8 71 chr12 7132133 7132259 -137150230 + (CGGGG)n Simple_repeat Simple_repeat 3 120 0 324 64 0 0 chr12 7132267 7132314 -137150175 + (CTCGG)n Simple_repeat Simple_repeat 5 51 0 852 125 0 29 chr12 7132588 7132724 -137149765 - FLAM_C SINE Alu -11 132 1 497 301 75 45 chr12 7132919 7133276 -137149213 + L2 LINE L2 2771 3134 -179 * 2054 251 113 22 chr12 7133260 7133980 -137148509 + L2 LINE L2 2005 2789 -525 938 137 0 0 chr12 7134086 7134217 -137148272 - AluSg/x SINE Alu -16 296 166 1116 113 0 7 chr12 7134276 7134427 -137148062 - AluSq/x SINE Alu -162 150 1 2358 108 0 0 chr12 7134573 7134880 -137147609 - AluSq SINE Alu -6 307 1 283 286 41 20 chr12 7134957 7135055 -137147434 + L2 LINE L2 3168 3267 -5 1240 119 8 128 chr12 7135648 7135891 -137146598 - AluJb SINE Alu -16 296 83 351 250 22 0 chr12 7135923 7136015 -137146474 - L2 LINE L2 -41 3231 3138 917 141 0 0 chr12 7136154 7136282 -137146207 - FLAM_C SINE Alu -13 130 3 767 237 212 49 chr12 7136304 7136546 -137145943 + L2 LINE L2 1329 1530 -1784 2672 24 7 0 chr12 7136546 7136842 -137145647 - AluY SINE Alu -13 298 1 767 237 212 49 chr12 7136842 7137047 -137145442 + L2 LINE L2 1530 1849 -1465 381 75 0 0 chr12 7137060 7137113 -137145376 - AluY SINE Alu -3 297 245 1526 66 0 6 chr12 7137113 7137295 -137145194 - AluY SINE Alu -130 181 1 1653 146 3 65 chr12 7137316 7137579 -137144910 - AluJo SINE Alu -11 301 60 2460 80 7 0 chr12 7137579 7137880 -137144609 - AluSc SINE Alu -6 303 1 1653 146 3 65 chr12 7137880 7137937 -137144552 - AluJo SINE Alu -252 60 1 2374 109 3 0 chr12 7137944 7138255 -137144234 - AluSx SINE Alu 0 312 1 2125 119 10 0 chr12 7138257 7138551 -137143938 - AluSq SINE Alu -16 297 1 2171 103 13 13 chr12 7138727 7139028 -137143461 + AluSg SINE Alu 1 301 -9 2204 113 10 7 chr12 7139046 7139385 -137143104 + AluY SINE Alu 1 311 0 2109 120 9 22 chr12 7139386 7139702 -137142787 + AluSx SINE Alu 1 312 0 2603 164 64 35 chr12 7139744 7140336 -137142153 + pTR5 LTR ERV1 738 1346 -1092 3460 166 109 28 chr12 7140350 7141110 -137141379 + LTR12 LTR ERV1 5 826 0 378 147 73 0 chr12 7141110 7141178 -137141311 + U6 snRNA snRNA 34 106 -1 1339 208 28 60 chr12 7141199 7141336 -137141153 + AluJo SINE Alu 1 141 -171 2090 119 7 4 chr12 7141336 7141614 -137140875 + AluSq SINE Alu 1 279 -34 1339 208 28 60 chr12 7141614 7141777 -137140712 + AluJo SINE Alu 141 293 -19 2356 109 7 0 chr12 7141777 7142081 -137140408 + AluSg SINE Alu 1 306 -4 1339 208 28 60 chr12 7142081 7142096 -137140393 + AluJo SINE Alu 293 307 -5 2235 101 0 0 chr12 7142101 7142410 -137140079 + AluSg SINE Alu 5 313 0 998 149 60 35 chr12 7142413 7142614 -137139875 + AluJo SINE Alu 87 292 -20 1621 177 13 23 chr12 7142616 7142915 -137139574 + AluJo SINE Alu 1 296 -16 1936 166 3 0 chr12 7142918 7143214 -137139275 + AluJb SINE Alu 1 297 -15 273 287 12 79 chr12 7143216 7143380 -137139109 - L1ME3A LINE L1 -258 5912 5760 1075 207 38 31 chr12 7143613 7143874 -137138615 - L2 LINE L2 -621 2693 2431 562 244 90 65 chr12 7144023 7144076 -137138413 - L1ME3A LINE L1 -562 5600 5550 2228 109 0 0 chr12 7144076 7144387 -137138102 - AluSx SINE Alu 0 311 1 562 244 90 65 chr12 7144387 7144635 -137137854 - L1ME3A LINE L1 -612 5550 5310 2458 93 3 0 chr12 7144635 7144946 -137137543 - AluSx SINE Alu 0 312 1 2177 117 3 13 chr12 7144955 7145253 -137137236 - AluSx SINE Alu -17 295 1 562 244 90 65 chr12 7145253 7145447 -137137042 - L1ME3A LINE L1 -859 5303 5101 28 0 0 0 chr12 7145451 7145479 -137137010 + AT_rich Low_complexity Low_complexity 1 28 0 2317 94 0 10 chr12 7145479 7145778 -137136711 - AluSx SINE Alu -16 296 1 1131 113 0 0 chr12 7145779 7145930 -137136559 - AluSq SINE Alu -16 297 147 390 261 0 0 chr12 7145930 7146022 -137136467 + pTR5 LTR ERV1 743 834 -1604 1191 126 12 0 chr12 7146439 7146606 -137135883 - AluJb SINE Alu -16 296 128 236 164 0 55 chr12 7146634 7146689 -137135800 - FLAM_A SINE Alu 0 133 82 351 250 22 0 chr12 7146721 7146813 -137135676 - L2 LINE L2 -41 3231 3138 882 139 0 8 chr12 7146952 7147081 -137135408 - AluJ SINE Alu -182 130 3 394 227 42 50 chr12 7147106 7147225 -137135264 + L2 LINE L2 1332 1449 -1865 275 200 0 38 chr12 7149107 7149187 -137133302 + CT-rich Low_complexity Low_complexity 4 80 0 215 179 0 0 chr12 7151252 7151291 -137131198 + A-rich Low_complexity Low_complexity 4 42 0 232 288 45 0 chr12 7151906 7151972 -137130517 + MIR SINE MIR 117 185 -77 22 0 0 0 chr12 7153439 7153461 -137129028 + GC_rich Low_complexity Low_complexity 1 22 0 24 32 0 0 chr12 7153580 7153611 -137128878 + GC_rich Low_complexity Low_complexity 1 31 0 4163 240 22 13 chr12 7154965 7156196 -137126293 + L1MEc LINE L1 2161 3365 -2850 1630 207 61 2 chr12 7156361 7156757 -137125732 - L1 LINE L1 -885 6680 6262 * 3590 62 10 4 chr12 7156755 7157256 -137125233 - L1MA1 LINE L1 -191 6111 5608 1255 199 17 20 chr12 7157261 7157562 -137124927 - L1 LINE L1 -1302 6263 5964 1243 115 5 29 chr12 7157679 7157888 -137124601 - L1PA12 LINE L1 -77 6091 5888 2822 239 28 20 chr12 7157890 7159155 -137123334 - L1 LINE L1 -4177 3389 2097 222 287 149 0 chr12 7159693 7159787 -137122702 + MER5A DNA MER1_type 9 116 -73 1005 204 9 42 chr12 7159787 7160003 -137122486 + AluJo SINE Alu 85 293 -19 321 234 0 0 chr12 7162588 7162682 -137119807 - L1MA9 LINE L1 0 6312 6219 800 246 21 38 chr12 7165236 7165472 -137117017 + MIR SINE MIR 19 250 -12 492 333 65 13 chr12 7165720 7165951 -137116538 + MIR SINE MIR 19 261 -1 269 241 103 0 chr12 7166690 7166777 -137115712 - MER5A DNA MER1_type -85 104 9 2447 92 0 0 chr12 7167993 7168299 -137114190 - AluY SINE Alu -5 306 1 2427 229 87 42 chr12 7168299 7169129 -137113360 + L1M4 LINE L1 3483 4349 -1797 1092 143 74 18 chr12 7169623 7169840 -137112649 + L1MB8 LINE L1 5935 6163 -15 464 167 0 105 chr12 7170090 7170204 -137112285 - AluY SINE Alu -5 306 205 1399 164 70 64 chr12 7171085 7171525 -137110964 - L1MB4 LINE L1 -2 6178 5736 298 230 30 30 chr12 7171861 7171961 -137110528 + MLT1L LTR MaLR 171 270 -345 282 243 56 19 chr12 7172182 7172289 -137110200 - L1MC4 LINE L1 -16 8026 7916 571 169 16 24 chr12 7176163 7176287 -137106202 - MER5A DNA MER1_type -66 123 1 868 109 122 6 chr12 7177295 7177451 -137105038 - MSTA LTR MaLR 0 428 255 391 228 28 107 chr12 7178228 7178443 -137104046 - MLT1J LTR MaLR -202 309 112 232 303 129 34 chr12 7178758 7179115 -137103374 - L1ME LINE L1 -239 6276 5886 338 268 18 18 chr12 7180137 7180249 -137102240 - L1ME LINE L1 -2962 3578 3467 248 268 14 14 chr12 7180250 7180321 -137102168 + CT-rich Low_complexity Low_complexity 3 73 0 228 152 0 0 chr12 7180581 7180627 -137101862 + Alu SINE Alu 258 303 0 2342 86 26 3 chr12 7180677 7180980 -137101509 - AluY SINE Alu 0 311 2 407 150 36 66 chr12 7180993 7181132 -137101357 - L1ME LINE L1 -4037 2503 2361 2496 68 0 0 chr12 7181132 7181439 -137101050 - AluY SINE Alu -4 307 1 2203 77 0 68 chr12 7181439 7181627 -137100862 - AluSc SINE Alu -8 301 143 2548 28 0 56 chr12 7181627 7181948 -137100541 - AluY SINE Alu -8 303 1 2203 77 0 68 chr12 7181948 7182082 -137100407 - AluSc SINE Alu -166 143 1 407 150 36 66 chr12 7182082 7182108 -137100381 - L1ME LINE L1 -4177 2363 2342 1554 163 0 0 chr12 7182112 7182357 -137100132 - AluSg SINE Alu -65 245 1 975 231 9 14 chr12 7182357 7182573 -137099916 - MER58A DNA MER1_type -8 216 2 331 250 96 0 chr12 7182574 7182678 -137099811 - L1ME LINE L1 -4192 2348 2235 1912 164 0 13 chr12 7182793 7183091 -137099398 - AluJb SINE Alu -18 294 1 2275 101 3 0 chr12 7183102 7183398 -137099091 - AluSq SINE Alu -16 297 1 1255 255 103 12 chr12 7183409 7183915 -137098574 - L1ME LINE L1 -4317 2223 1672 1160 127 6 6 chr12 7183915 7184080 -137098409 - AluSg/x SINE Alu -13 297 133 253 214 114 0 chr12 7184090 7184160 -137098329 - L1ME LINE L1 -4873 1667 1590 2282 120 0 10 chr12 7184161 7184470 -137098019 - AluSq SINE Alu -7 306 1 548 215 132 96 chr12 7184480 7184875 -137097614 - L1ME LINE L1 -5224 1319 911 453 165 0 0 chr12 7185100 7185179 -137097310 + AluJ/FRAM SINE Alu 231 309 -3 344 341 65 0 chr12 7185293 7185431 -137097058 + L2 LINE L2 2917 3063 -209 334 325 8 43 chr12 7185685 7185802 -137096687 - MER5A DNA MER1_type -56 133 21 1044 244 137 57 chr12 7185809 7186305 -137096184 + MLT1E LTR MaLR 1 587 -6 2392 98 3 0 chr12 7187015 7187320 -137095169 + AluSx SINE Alu 1 306 -6 578 189 149 11 chr12 7187329 7187504 -137094985 + Charlie1 DNA MER1_type 1578 1776 -985 1074 190 0 0 chr12 7187504 7187701 -137094788 - AluJb SINE Alu 0 333 137 728 280 33 61 chr12 7187759 7188184 -137094305 - L2 LINE L2 -656 2658 2246 270 277 59 30 chr12 7188971 7189072 -137093417 + L2 LINE L2 3143 3246 -26 230 348 14 22 chr12 7189191 7189329 -137093160 + A-rich Low_complexity Low_complexity 4 140 0 2191 128 0 0 chr12 7190397 7190702 -137091787 - AluSx SINE Alu -7 305 1 251 164 36 36 chr12 7190702 7190746 -137091743 + L2 LINE L2 3221 3267 -5 1849 153 7 3 chr12 7190758 7191046 -137091443 + AluJb SINE Alu 1 289 -23 231 88 0 0 chr12 7192116 7192150 -137090339 + (GA)n Simple_repeat Simple_repeat 1 34 0 536 0 16 0 chr12 7192797 7192861 -137089628 + (TCTA)n Simple_repeat Simple_repeat 2 66 0 441 103 0 0 chr12 7192861 7192919 -137089570 - AluSq SINE Alu -17 295 238 1250 117 6 17 chr12 7192928 7193108 -137089381 - AluSq SINE Alu -134 179 2 756 37 37 30 chr12 7193115 7193249 -137089240 + (TCTA)n Simple_repeat Simple_repeat 2 136 0 2208 92 28 0 chr12 7193249 7193533 -137088956 - AluSx SINE Alu -18 294 3 232 125 10 77 chr12 7193538 7193546 -137088943 + (TCTA)n Simple_repeat Simple_repeat 2 9 -89 2449 88 0 0 chr12 7193546 7193840 -137088649 - AluSx SINE Alu -18 294 1 232 125 10 77 chr12 7193840 7193935 -137088554 + (TCTA)n Simple_repeat Simple_repeat 9 98 0 2204 112 6 10 chr12 7193952 7194265 -137088224 - AluSx SINE Alu 0 312 1 304 304 93 31 chr12 7194270 7194464 -137088025 - L1MEd LINE L1 -4954 1165 960 300 111 0 0 chr12 7194466 7194511 -137087978 + (TCTA)n Simple_repeat Simple_repeat 2 46 0 474 261 154 54 chr12 7194687 7195128 -137087361 - LTR33 LTR ERVL -15 506 22 576 186 10 0 chr12 7195939 7196041 -137086448 + FRAM SINE Alu 56 158 -18 965 126 81 17 chr12 7196194 7196368 -137086121 - MER5A DNA MER1_type -3 186 2 3155 182 31 52 chr12 7196586 7197348 -137085141 - LTR5 LTR ERVK 0 969 224 2416 51 0 10 chr12 7197351 7197643 -137084846 - AluY SINE Alu -10 301 13 1257 171 14 0 chr12 7197647 7197864 -137084625 - LTR5 LTR ERVK -749 220 1 2770 140 139 42 chr12 7198302 7198716 -137083773 - MER51D LTR ERV1 0 657 166 1937 109 0 0 chr12 7198716 7198964 -137083525 - AluSx SINE Alu -64 248 1 2770 140 139 42 chr12 7198964 7199148 -137083341 - MER51D LTR ERV1 -491 166 1 21 0 0 0 chr12 7199848 7199869 -137082620 + AT_rich Low_complexity Low_complexity 1 21 0 805 180 0 0 chr12 7199966 7200088 -137082401 + FLAM_C SINE Alu 7 128 -15 1982 158 0 0 chr12 7200098 7200389 -137082100 - AluJb SINE Alu -21 291 1 30 0 0 0 chr12 7200389 7200419 -137082070 + AT_rich Low_complexity Low_complexity 1 30 0 2160 128 3 0 chr12 7200419 7200715 -137081774 + AluSx SINE Alu 1 297 -15 2274 110 0 0 chr12 7200743 7201043 -137081446 - AluY SINE Alu -11 300 1 2206 131 0 3 chr12 7201051 7201357 -137081132 - AluSx SINE Alu -7 305 1 512 237 66 47 chr12 7201357 7201503 -137080986 - L1ME4a LINE L1 -1 6120 5965 1862 167 52 0 chr12 7201503 7201791 -137080698 - AluJb SINE Alu -9 303 1 512 237 66 47 chr12 7201791 7201901 -137080588 - L1ME4a LINE L1 -156 5965 5859 2121 105 14 10 chr12 7201922 7202216 -137080273 - AluSc SINE Alu -14 295 1 2156 137 7 0 chr12 7202332 7202632 -137079857 - AluSx SINE Alu -10 302 1 2259 91 0 3 chr12 7202686 7203013 -137079476 + AluY SINE Alu 1 326 0 2155 114 0 7 chr12 7203013 7203345 -137079144 + AluSc SINE Alu 1 309 0 270 0 0 0 chr12 7203346 7203376 -137079113 + (CA)n Simple_repeat Simple_repeat 1 30 0 2146 207 12 67 chr12 7203395 7203774 -137078715 + L1MD1 LINE L1 4019 4417 -1729 2003 145 3 43 chr12 7203774 7203918 -137078571 + AluJo SINE Alu 1 149 -163 2506 77 0 0 chr12 7203918 7204218 -137078271 + AluY SINE Alu 1 300 -11 2003 145 3 43 chr12 7204218 7204398 -137078091 + AluJo SINE Alu 149 312 0 2146 207 12 67 chr12 7204398 7204464 -137078025 + L1MD1 LINE L1 4417 4485 -1661 2235 127 7 0 chr12 7204464 7204771 -137077718 + AluSx SINE Alu 1 309 -3 2146 207 12 67 chr12 7204771 7204966 -137077523 + L1MD1 LINE L1 4485 4625 -1521 956 190 0 62 chr12 7204967 7205162 -137077327 + AluJo SINE Alu 125 307 -5 879 143 0 0 chr12 7205200 7205333 -137077156 + AluJb SINE Alu 1 133 -179 321 185 0 0 chr12 7205336 7205401 -137077088 + (CA)n Simple_repeat Simple_repeat 2 66 0 205 300 14 0 chr12 7205406 7205476 -137077013 + (TA)n Simple_repeat Simple_repeat 2 72 0 300 135 0 0 chr12 7205486 7205538 -137076951 - Alu SINE Alu 0 300 249 682 201 47 0 chr12 7205538 7205687 -137076802 + AluSg/x SINE Alu 150 305 -5 4935 145 70 11 chr12 7205693 7206069 -137076420 + L1MD1 LINE L1 5209 5561 -681 2698 42 0 0 chr12 7206069 7206378 -137076111 + AluY SINE Alu 1 309 -2 4935 145 70 11 chr12 7206378 7206982 -137075507 + L1MD1 LINE L1 5561 6239 -3 2305 112 3 0 chr12 7206983 7207287 -137075202 + AluSx SINE Alu 2 306 -6 2370 94 10 0 chr12 7207356 7207664 -137074825 + AluY SINE Alu 1 311 0 404 283 81 66 chr12 7207873 7208234 -137074255 - L1ME LINE L1 -351 5770 5310 1964 144 0 10 chr12 7208394 7208692 -137073797 + AluJb SINE Alu 1 295 -17 2409 84 0 0 chr12 7209074 7209370 -137073119 - AluSx SINE Alu -13 299 4 214 347 85 68 chr12 7209537 7209877 -137072612 - L2 LINE L2 -925 2389 2044 21 0 0 0 chr12 7210622 7210643 -137071846 + AT_rich Low_complexity Low_complexity 1 21 0 1414 156 0 59 chr12 7210645 7210664 -137071825 - AluJo SINE Alu 0 312 293 2379 76 3 58 chr12 7210664 7210994 -137071495 - AluSx SINE Alu 0 312 1 1414 156 0 59 chr12 7210994 7211230 -137071259 - AluJo SINE Alu -19 293 72 1646 159 8 0 chr12 7211301 7211552 -137070937 + AluSx SINE Alu 1 253 -59 2308 100 3 0 chr12 7211581 7211880 -137070609 + AluSp SINE Alu 1 300 -13 333 0 0 0 chr12 7211955 7211992 -137070497 + (TG)n Simple_repeat Simple_repeat 2 38 0 597 146 64 9 chr12 7211992 7212094 -137070395 - AluSg/x SINE Alu -25 284 174 993 166 6 0 chr12 7212096 7212253 -137070236 - FRAM SINE Alu -7 159 2 1245 193 93 32 chr12 7212257 7212537 -137069952 - AluJo SINE Alu -15 297 1 543 293 6 6 chr12 7212667 7212834 -137069655 - L1MC4a LINE L1 -1906 5902 5736 241 271 71 0 chr12 7212836 7212921 -137069568 - L1MC4a LINE L1 -2197 5611 5521 458 285 15 44 chr12 7212944 7213081 -137069408 + MIR SINE MIR 82 214 -48 220 148 0 37 chr12 7213735 7213789 -137068700 + (GGAGA)n Simple_repeat Simple_repeat 1 52 0 768 230 83 44 chr12 7214702 7214906 -137067583 + MIR SINE MIR 51 262 0 235 297 117 0 chr12 7215795 7215906 -137066583 + MIR SINE MIR 23 146 -62 205 290 81 0 chr12 7216010 7216072 -137066417 - MIR SINE MIR 0 262 196 343 266 0 0 chr12 7216103 7216194 -137066295 - MIR SINE MIR -99 109 19 529 154 0 15 chr12 7216839 7216975 -137065514 + (CA)n Simple_repeat Simple_repeat 2 135 0 294 269 0 0 chr12 7216991 7217147 -137065342 + (CA)n Simple_repeat Simple_repeat 1 156 0 695 201 6 0 chr12 7217190 7217369 -137065120 + (CA)n Simple_repeat Simple_repeat 1 180 0 200 221 0 15 chr12 7218109 7218177 -137064312 + G-rich Low_complexity Low_complexity 2 68 0 284 296 11 39 chr12 7218179 7218358 -137064131 + GA-rich Low_complexity Low_complexity 3 176 0 236 323 32 16 chr12 7218884 7219008 -137063481 - MIR SINE MIR -67 141 16 308 314 40 86 chr12 7219127 7219302 -137063187 - MIR SINE MIR -73 189 23 369 0 0 0 chr12 7219999 7220040 -137062449 + (TG)n Simple_repeat Simple_repeat 1 41 0 198 0 0 0 chr12 7220039 7220061 -137062428 + (GA)n Simple_repeat Simple_repeat 1 22 0 * 261 167 0 0 chr12 7220934 7220988 -137061501 + GA-rich Low_complexity Low_complexity 1 54 0 300 282 0 29 chr12 7221292 7221395 -137061094 + CT-rich Low_complexity Low_complexity 3 102 0 203 103 26 0 chr12 7221896 7221935 -137060554 + CT-rich Low_complexity Low_complexity 2 41 0 238 324 124 14 chr12 7222421 7222566 -137059923 + L3b LINE CR1 1422 1582 -1 182 281 83 73 chr12 7225186 7225282 -137057207 - L2 LINE L2 -29 3284 3188 499 250 42 0 chr12 7227015 7227183 -137055306 + (TGGG)n Simple_repeat Simple_repeat 1 175 0 333 186 0 44 chr12 7227469 7227582 -137054907 + CT-rich Low_complexity Low_complexity 5 112 0 192 77 0 0 chr12 7227640 7227666 -137054823 + (CTG)n Simple_repeat Simple_repeat 3 28 0 22 0 0 0 chr12 7228021 7228043 -137054446 + GC_rich Low_complexity Low_complexity 1 22 0 211 200 0 0 chr12 7230778 7230823 -137051666 + (CA)n Simple_repeat Simple_repeat 1 45 0 270 275 139 9 chr12 7231233 7231404 -137051085 + MIR SINE MIR 3 198 -64 821 193 21 101 chr12 7231510 7231748 -137050741 - MER20 DNA MER1_type 0 219 1 2281 93 0 6 chr12 7231774 7232085 -137050404 - AluSx SINE Alu -3 309 1 2043 87 0 4 chr12 7232111 7232386 -137050103 + AluSg SINE Alu 37 310 0 589 281 15 39 chr12 7232393 7232596 -137049893 + MIR SINE MIR 61 258 -4 387 306 93 32 chr12 7233660 7233835 -137048654 - L2 LINE L2 -6 3266 3103 2286 86 0 7 chr12 7233835 7234137 -137048352 + AluSp SINE Alu 1 300 -13 387 306 93 32 chr12 7234137 7234272 -137048217 - L2 LINE L2 -169 3103 2937 746 177 13 13 chr12 7234311 7234469 -137048020 + MIR SINE MIR 61 218 -44 2089 109 3 7 chr12 7234482 7234776 -137047713 + AluSq SINE Alu 1 293 -20 255 31 0 0 chr12 7234781 7234813 -137047676 + (TTAA)n Simple_repeat Simple_repeat 1 32 0 1871 130 23 10 chr12 7235130 7235431 -137047058 + AluJb SINE Alu 6 310 -2 402 283 62 14 chr12 7237585 7237730 -137044759 + MIR SINE MIR 103 254 -8 189 107 0 0 chr12 7238515 7238543 -137043946 + (GGA)n Simple_repeat Simple_repeat 3 30 0 189 0 0 0 chr12 7240075 7240096 -137042393 + (CAGGC)n Simple_repeat Simple_repeat 3 23 0 258 301 14 14 chr12 7240928 7241001 -137041488 - L2 LINE L2 0 3272 3200 570 181 16 16 chr12 7241130 7241257 -137041232 + MER104 DNA Tc2 1 127 -53 584 283 12 6 chr12 7241281 7241447 -137041042 - MIR SINE MIR -16 246 80 887 139 8 0 chr12 7241448 7241577 -137040912 + FLAM_C SINE Alu 1 130 -3 562 322 55 15 chr12 7241765 7241967 -137040522 - MER63A DNA MER1_type 0 210 1 2243 105 0 16 chr12 7243275 7243588 -137038901 - AluSx SINE Alu -4 308 1 1798 175 3 3 chr12 7243599 7243902 -137038587 - AluJo SINE Alu -9 303 1 1308 251 60 9 chr12 7243984 7244403 -137038086 - L1MC4 LINE L1 -131 7911 7472 372 287 81 22 chr12 7245459 7245595 -137036894 + MIR3 SINE MIR 39 182 -26 504 200 0 0 chr12 7245795 7245920 -137036569 + (CA)n Simple_repeat Simple_repeat 1 125 0 410 353 8 46 chr12 7246822 7247063 -137035426 - L2 LINE L2 -493 2821 2590 755 193 0 7 chr12 7247113 7247248 -137035241 + AluJo SINE Alu 10 143 -169 2030 146 0 10 chr12 7247249 7247558 -137034931 + AluJb SINE Alu 1 306 -6 433 283 256 33 chr12 7247559 7247958 -137034531 - L2 LINE L2 -789 2525 2038 1754 149 43 0 chr12 7249186 7249343 -137033146 - AluJb SINE Alu -16 296 120 209 33 33 0 chr12 7249343 7249373 -137033116 + (TG)n Simple_repeat Simple_repeat 2 32 0 1754 149 43 0 chr12 7249373 7249497 -137032992 - AluJb SINE Alu -192 120 3 1567 155 14 14 chr12 7253669 7253946 -137028543 + AluJo SINE Alu 16 292 -20 258 299 17 51 chr12 7254422 7254539 -137027950 - MIR SINE MIR -142 120 8 1848 133 13 33 chr12 7256185 7256485 -137026004 + AluJo SINE Alu 1 294 -18 399 318 165 34 chr12 7257051 7257372 -137025117 - L2 LINE L2 -2 3311 2949 187 325 114 44 chr12 7257384 7257498 -137024991 + L3 LINE CR1 1454 1575 -2 900 140 0 22 chr12 7257918 7258054 -137024435 + FLAM_C SINE Alu 1 133 0 2243 74 0 14 chr12 7258827 7259136 -137023353 - AluSc SINE Alu 0 305 1 748 138 0 9 chr12 7261316 7261425 -137021064 - FLAM_C SINE Alu -33 110 3 237 254 0 167 chr12 7262065 7262203 -137020286 - MIR SINE MIR -61 147 33 2391 55 0 0 chr12 7263589 7263880 -137018609 + AluY SINE Alu 1 291 -20 963 100 0 23 chr12 7264614 7264744 -137017745 - FLAM_C SINE Alu -6 127 1 706 226 45 23 chr12 7264746 7264923 -137017566 + MER58A DNA MER1_type 42 222 -2 220 215 0 75 chr12 7266571 7266664 -137015825 + G-rich Low_complexity Low_complexity 4 89 0 26 0 0 0 chr12 7266888 7266914 -137015575 + GC_rich Low_complexity Low_complexity 1 26 0 276 244 108 30 chr12 7269032 7269153 -137013336 - MIR SINE MIR -60 148 23 196 283 17 17 chr12 7273220 7273280 -137009209 + MIR SINE MIR 45 104 -104 1320 113 9 75 chr12 7273284 7273465 -137009024 - AluJo SINE Alu -10 302 135 2272 117 7 0 chr12 7273465 7273772 -137008717 - AluSq SINE Alu -4 309 1 1320 113 9 75 chr12 7273772 7273803 -137008686 - AluJo SINE Alu -177 135 104 296 129 0 17 chr12 7273803 7273863 -137008626 - Alu SINE Alu -257 42 1 431 257 46 0 chr12 7273869 7273978 -137008511 + MIR SINE MIR 134 247 -15 721 275 46 14 chr12 7274023 7274241 -137008248 + MIR SINE MIR 2 226 -36 2229 96 20 3 chr12 7274508 7274800 -137007689 - AluSg SINE Alu -13 297 1 428 314 117 80 chr12 7274889 7275141 -137007348 - L2 LINE L2 -341 2973 2732 1286 184 3 108 chr12 7275141 7275473 -137007016 - AluY SINE Alu -14 297 1 428 314 117 80 chr12 7275473 7275544 -137006945 - L2 LINE L2 -582 2732 2665 2513 80 3 0 chr12 7275544 7275844 -137006645 + AluSp SINE Alu 1 301 -12 428 314 117 80 chr12 7275844 7275989 -137006500 - L2 LINE L2 -649 2665 2527 2482 93 0 0 chr12 7275989 7276299 -137006190 + AluSx SINE Alu 1 310 -2 428 314 117 80 chr12 7276299 7276587 -137005902 - L2 LINE L2 -787 2527 2187 1347 122 102 86 chr12 7276869 7277002 -137005487 + AluSg1 SINE Alu 1 130 -179 2085 94 54 27 chr12 7277002 7277300 -137005189 + AluSx SINE Alu 1 306 -6 1676 81 0 0 chr12 7277302 7277500 -137004989 + AluSx SINE Alu 1 198 -114 1347 122 102 86 chr12 7277500 7277620 -137004869 + AluSg1 SINE Alu 130 265 -44 195 42 0 0 chr12 7277620 7277644 -137004845 + (TAAAA)n Simple_repeat Simple_repeat 2 25 0 1347 122 102 86 chr12 7277644 7277690 -137004799 + AluSg1 SINE Alu 265 309 0 2217 82 0 0 chr12 7277693 7277961 -137004528 + AluSp SINE Alu 44 311 -2 504 0 0 0 chr12 7278026 7278082 -137004407 + (TA)n Simple_repeat Simple_repeat 1 56 0 1775 94 22 4 chr12 7278137 7278412 -137004077 + L1PB1 LINE L1 5872 6151 0 1863 147 14 7 chr12 7278528 7278821 -137003668 + AluSx SINE Alu 1 295 -17 234 62 0 0 chr12 7278953 7278985 -137003504 + (CTG)n Simple_repeat Simple_repeat 1 32 0 2301 96 0 10 chr12 7279006 7279307 -137003182 + AluSx SINE Alu 1 298 -14 41 14 0 56 chr12 7279401 7279444 -137003045 + AT_rich Low_complexity Low_complexity 1 45 -22 2439 66 0 26 chr12 7279444 7279749 -137002740 + AluY SINE Alu 1 297 -14 667 183 0 9 chr12 7279749 7279864 -137002625 - FLAM_A SINE Alu -15 118 5 1593 154 108 7 chr12 7279864 7280143 -137002346 - AluJo SINE Alu -5 307 1 41 14 0 56 chr12 7280143 7280168 -137002321 + AT_rich Low_complexity Low_complexity 42 67 0 1780 159 3 14 chr12 7280168 7280457 -137002032 - AluJb SINE Alu -26 286 1 693 244 74 33 chr12 7280498 7280616 -137001873 - L1ME3 LINE L1 -1 6161 6049 1684 149 52 17 chr12 7280616 7280904 -137001585 + AluJb SINE Alu 1 298 -14 2648 21 0 0 chr12 7280904 7281227 -137001262 + AluY SINE Alu 1 323 0 693 244 74 33 chr12 7281227 7281348 -137001141 - L1ME3 LINE L1 -112 6050 5910 611 203 182 0 chr12 7281357 7281500 -137000989 + FRAM SINE Alu 1 40 0 566 204 113 50 chr12 7281504 7281648 -137000841 - L1ME3 LINE L1 -252 5912 5748 2108 134 7 0 chr12 7281648 7281938 -137000551 - AluSx SINE Alu -20 292 1 566 204 113 50 chr12 7281938 7282014 -137000475 - L1ME3 LINE L1 -416 5748 5678 357 127 0 0 chr12 7282103 7282158 -137000331 + MER101 LTR ERV1 403 457 -17 1189 194 23 81 chr12 7282158 7282272 -137000217 + AluJo SINE Alu 21 140 -172 2208 76 4 0 chr12 7282272 7282536 -136999953 - AluSp SINE Alu -48 265 1 1189 194 23 81 chr12 7282536 7282731 -136999758 + AluJo SINE Alu 140 312 0 282 223 12 56 chr12 7282748 7282855 -136999634 - L1ME3 LINE L1 -470 5700 5598 269 270 10 40 chr12 7283978 7284078 -136998411 - L2 LINE L2 -967 2347 2251 2307 92 7 0 chr12 7284536 7284829 -136997660 - AluSg SINE Alu -15 295 1 8313 58 7 0 chr12 7285041 7286003 -136996486 - LTR5 LTR ERVK 0 969 1 249 157 0 0 chr12 7286031 7286071 -136996418 + A-rich Low_complexity Low_complexity 1 43 -8 2056 143 3 10 chr12 7286071 7286385 -136996104 + AluSx SINE Alu 1 312 0 586 240 40 23 chr12 7286581 7286756 -136995733 - FRAM SINE Alu 0 176 1 2101 117 3 58 chr12 7286868 7287194 -136995295 + AluSx SINE Alu 1 308 -4 1676 160 56 4 chr12 7287266 7287570 -136994919 - AluJb SINE Alu 0 318 1 320 312 32 32 chr12 7287604 7287761 -136994728 - Tigger7 DNA MER2_type -1016 1471 1315 1915 131 31 0 chr12 7287968 7288258 -136994231 - AluSx SINE Alu -8 304 6 2238 106 7 0 chr12 7288524 7288816 -136993673 - AluSg SINE Alu -16 294 1 698 214 0 40 chr12 7289078 7289251 -136993238 - FRAM SINE Alu 0 166 1 2452 93 0 0 chr12 7289298 7289608 -136992881 - AluSq SINE Alu -3 310 1 333 308 161 0 chr12 7290051 7290181 -136992308 - MIR SINE MIR -71 191 41 257 169 0 101 chr12 7290254 7290343 -136992146 + (CCCCG)n Simple_repeat Simple_repeat 3 82 0 843 173 18 30 chr12 7290989 7291157 -136991332 + FRAM SINE Alu 1 164 -12 2216 114 10 0 chr12 7291234 7291542 -136990947 - AluSx SINE Alu -1 311 1 1019 176 0 0 chr12 7291741 7291900 -136990589 + AluJb SINE Alu 137 295 -17 281 233 33 0 chr12 7291901 7291961 -136990528 - L2 LINE L2 -18 3295 3234 1940 151 23 7 chr12 7291986 7292291 -136990198 + AluJo SINE Alu 1 310 -2 198 246 18 18 chr12 7292319 7292376 -136990113 - L2 LINE L2 -848 2466 2410 2193 113 7 0 chr12 7292385 7292677 -136989812 + AluSq SINE Alu 1 294 -19 203 152 0 0 chr12 7292696 7292729 -136989760 + (CA)n Simple_repeat Simple_repeat 2 34 0 2280 121 0 6 chr12 7292825 7293139 -136989350 + AluSx SINE Alu 1 312 0 1814 164 44 19 chr12 7293497 7293863 -136988626 + THE1C LTR MaLR 1 375 0 1797 178 28 0 chr12 7294164 7294286 -136988203 + AluJb SINE Alu 1 118 -194 192 40 0 0 chr12 7294286 7294311 -136988178 + (CA)n Simple_repeat Simple_repeat 2 26 0 1797 178 28 0 chr12 7294311 7294475 -136988014 + AluJb SINE Alu 118 295 -17 2499 74 3 16 chr12 7294481 7294793 -136987696 + AluSq SINE Alu 1 308 -5 1480 166 35 55 chr12 7294793 7295082 -136987407 + AluJo SINE Alu 1 283 -29 1713 143 66 30 chr12 7295082 7295197 -136987292 + AluSx SINE Alu 1 110 -202 432 0 0 0 chr12 7295197 7295245 -136987244 + (CTA)n Simple_repeat Simple_repeat 1 48 0 1713 143 66 30 chr12 7295245 7295430 -136987059 + AluSx SINE Alu 110 312 0 272 274 35 0 chr12 7295462 7295575 -136986914 + L1M4 LINE L1 4735 4851 -1295 407 309 147 27 chr12 7295585 7295918 -136986571 + L1M4 LINE L1 4877 5249 -897 2415 158 164 8 chr12 7295934 7296423 -136986066 + MLT1F1 LTR MaLR 1 565 -2 1348 148 0 15 chr12 7296436 7296638 -136985851 + AluJo SINE Alu 1 199 -113 1048 109 0 0 chr12 7296639 7296786 -136985703 + AluSg/x SINE Alu 153 299 -13 2403 91 0 0 chr12 7297170 7297467 -136985022 + AluSc SINE Alu 1 297 -12 2427 100 0 0 chr12 7297471 7297772 -136984717 + AluSq SINE Alu 1 301 -12 1982 151 7 10 chr12 7297811 7297979 -136984510 - AluSx SINE Alu -9 303 136 260 0 0 54 chr12 7297979 7298016 -136984473 + (TTTA)n Simple_repeat Simple_repeat 3 37 0 1887 108 17 45 chr12 7298016 7298304 -136984185 - AluSg SINE Alu -30 280 1 1982 151 7 10 chr12 7298304 7298438 -136984051 - AluSx SINE Alu -174 138 1 1606 153 0 34 chr12 7298519 7298787 -136983702 + AluJo SINE Alu 2 260 -52 225 244 0 0 chr12 7298822 7298867 -136983622 + MER5A DNA MER1_type 9 53 -136 605 177 0 9 chr12 7299043 7299156 -136983333 + FRAM SINE Alu 1 104 -72 1801 210 78 12 chr12 7299160 7299584 -136982905 + MER66A LTR ERV1 27 478 0 1594 151 68 17 chr12 7299616 7299710 -136982779 - MER51A LTR ERV1 0 634 546 1621 86 70 45 chr12 7299710 7299954 -136982535 - AluSg SINE Alu -6 304 55 1594 151 68 17 chr12 7299954 7300324 -136982165 - MER51A LTR ERV1 -88 546 2 262 208 0 0 chr12 7300325 7300373 -136982116 + AluJo/FLAM SINE Alu 86 133 -169 2611 48 0 22 chr12 7300376 7300692 -136981797 + AluY SINE Alu 3 311 0 2258 110 0 0 chr12 7300860 7301159 -136981330 - AluSx SINE Alu -13 299 1 1229 118 0 0 chr12 7301159 7301320 -136981169 - AluSg/x SINE Alu -18 292 132 2309 78 20 3 chr12 7301320 7301614 -136980875 - AluSq SINE Alu -14 299 1 204 258 15 15 chr12 7301973 7302039 -136980450 + MIR SINE MIR 197 262 0 2119 144 0 6 chr12 7302182 7302495 -136979994 + AluJo SINE Alu 1 311 -1 555 332 18 9 chr12 7302770 7302987 -136979502 - MIR SINE MIR -21 241 23 318 231 128 13 chr12 7303243 7303378 -136979111 + MIR SINE MIR 100 256 -6 240 302 0 0 chr12 7304866 7304929 -136977560 + GA-rich Low_complexity Low_complexity 2 64 0 734 284 62 37 chr12 7305944 7306265 -136976224 - L2 LINE L2 0 3313 2985 203 260 27 14 chr12 7306644 7306717 -136975772 + MIR3 SINE MIR 6 79 -129 2471 176 97 36 chr12 7306902 7307426 -136975063 - MER21A LTR ERV1 0 931 376 953 138 67 119 chr12 7307432 7307496 -136974993 - MER21A LTR ERV1 -668 263 197 2443 92 0 0 chr12 7307496 7307802 -136974687 + AluSx SINE Alu 1 306 -6 1706 65 0 28 chr12 7307811 7308025 -136974464 + AluY SINE Alu 94 301 -10 953 138 67 119 chr12 7308025 7308219 -136974270 - MER21A LTR ERV1 -742 189 9 306 258 53 60 chr12 7308219 7308370 -136974119 + L1MCa LINE L1 1942 2091 -4335 * 367 310 39 35 chr12 7308235 7308438 -136974051 - L1MC5 LINE L1 -182 7779 7576 348 286 57 51 chr12 7308377 7308650 -136973839 + L1MCa LINE L1 1907 2091 -4335 * 47 0 0 0 chr12 7308650 7308697 -136973792 + AT_rich Low_complexity Low_complexity 1 47 0 332 328 0 47 chr12 7309399 7309483 -136973006 - L2 LINE L2 -1 3271 3193 1669 142 39 90 chr12 7309483 7309608 -136972881 + AluJo SINE Alu 1 131 -181 1890 168 3 13 chr12 7309608 7309923 -136972566 + AluJb SINE Alu 1 312 0 1669 142 39 90 chr12 7309923 7310108 -136972381 + AluJo SINE Alu 131 295 -17 332 328 0 47 chr12 7310108 7310151 -136972338 - L2 LINE L2 -79 3193 3150 252 228 215 0 chr12 7310707 7310786 -136971703 + MER20B DNA MER1_type 68 163 -620 1846 159 20 7 chr12 7310909 7311204 -136971285 + AluJo SINE Alu 3 301 -11 1018 136 28 40 chr12 7311373 7311549 -136970940 - AluJo SINE Alu -54 258 85 2380 101 0 0 chr12 7312737 7313044 -136969445 - AluSc SINE Alu -2 307 1 230 222 0 25 chr12 7313740 7313821 -136968668 + (CCG)n Simple_repeat Simple_repeat 1 79 0 213 333 11 11 chr12 7316404 7316491 -136965998 + L3b LINE CR1 1303 1389 -194 2411 42 42 3 chr12 7317535 7317820 -136964669 - AluY SINE Alu -15 296 1 2569 66 0 0 chr12 7317881 7318185 -136964304 + AluSx SINE Alu 1 304 -8 313 218 218 58 chr12 7318345 7318551 -136963938 + MIR SINE MIR 3 241 -21 568 306 31 0 chr12 7319302 7319524 -136962965 + L3b LINE CR1 1190 1418 -165 2310 93 3 3 chr12 7319568 7319880 -136962609 - AluSp SINE Alu -1 312 1 966 119 0 7 chr12 7319898 7320041 -136962448 - FLAM_C SINE Alu -1 142 1 1264 118 165 9 chr12 7320047 7320259 -136962230 - AluSx SINE Alu -67 245 1 1715 181 14 0 chr12 7320293 7320586 -136961903 + AluJb SINE Alu 1 297 -15 200 33 0 33 chr12 7322469 7322499 -136959990 + (TTTA)n Simple_repeat Simple_repeat 2 30 0 336 48 0 0 chr12 7324281 7324323 -136958166 + (TG)n Simple_repeat Simple_repeat 1 42 0 2132 85 20 0 chr12 7325655 7325949 -136956540 - AluSx SINE Alu -12 300 1 248 214 10 61 chr12 7326760 7326911 -136955578 + CT-rich Low_complexity Low_complexity 1 143 0 196 98 24 24 chr12 7326918 7326959 -136955530 + (TCTCCC)n Simple_repeat Simple_repeat 1 41 0 310 201 12 67 chr12 7327120 7327338 -136955151 + (CGGGG)n Simple_repeat Simple_repeat 1 206 0 25 51 0 0 chr12 7327399 7327438 -136955051 + GC_rich Low_complexity Low_complexity 1 39 0 22 35 0 0 chr12 7327574 7327603 -136954886 + GC_rich Low_complexity Low_complexity 1 29 0 508 240 116 14 chr12 7329227 7329373 -136953116 + MIR3 SINE MIR 16 176 -32 2236 45 0 21 chr12 7329694 7330011 -136952478 + AluY SINE Alu 1 311 0 198 0 0 0 chr12 7330590 7330612 -136951877 + (A)n Simple_repeat Simple_repeat 1 22 0 2341 99 0 3 chr12 7330612 7330926 -136951563 + AluSq SINE Alu 1 313 0 2399 80 3 3 chr12 7330932 7331244 -136951245 + AluSq SINE Alu 1 312 -1 698 266 76 25 chr12 7332138 7332375 -136950114 + MIR SINE MIR 1 249 -13 1901 118 90 0 chr12 7332391 7332670 -136949819 - AluSg SINE Alu -6 304 1 2085 124 16 0 chr12 7334061 7334368 -136948121 - AluSx SINE Alu 0 312 1 223 239 0 0 chr12 7335601 7335647 -136946842 + CT-rich Low_complexity Low_complexity 2 47 0 489 34 0 0 chr12 7335897 7335956 -136946533 + (CAG)n Simple_repeat Simple_repeat 1 59 0 228 67 0 0 chr12 7337303 7337333 -136945156 + (CGCTG)n Simple_repeat Simple_repeat 4 33 0 2034 129 0 7 chr12 7338681 7338984 -136943505 - AluJb SINE Alu -11 301 1 2151 86 0 33 chr12 7339168 7339470 -136943019 - AluSc SINE Alu -17 292 1 1905 112 0 7 chr12 7339479 7339748 -136942741 - AluSx SINE Alu -45 267 1 190 370 50 42 chr12 7340358 7340477 -136942012 + MIR SINE MIR 20 139 -123 23 0 0 0 chr12 7341406 7341429 -136941060 + AT_rich Low_complexity Low_complexity 1 23 0 1414 160 141 0 chr12 7341772 7342034 -136940455 + AluJo SINE Alu 3 301 -1 2026 108 7 7 chr12 7342204 7342500 -136939989 + AluSg SINE Alu 1 296 -14 536 32 0 0 chr12 7342997 7343059 -136939430 + U7 snRNA snRNA 2 63 0 1802 131 93 44 chr12 7344032 7344375 -136938114 - MER46B DNA MER2_type -1 235 1 1158 286 52 50 chr12 7346362 7346568 -136935921 - L2 LINE L2 -2 3311 3107 2010 138 7 3 chr12 7346568 7346873 -136935616 + AluJo SINE Alu 1 306 -6 1158 286 52 50 chr12 7346873 7347110 -136935379 - L2 LINE L2 -206 3107 2867 831 126 0 0 chr12 7347194 7347313 -136935176 + AluJo/FLAM SINE Alu 11 129 -183 1465 196 47 17 chr12 7347315 7347433 -136935056 + AluJb SINE Alu 3 116 -241 204 67 0 0 chr12 7347433 7347463 -136935026 + (CTA)n Simple_repeat Simple_repeat 1 30 0 1465 196 47 17 chr12 7347463 7347690 -136934799 + AluJb SINE Alu 116 357 0 310 293 43 17 chr12 7347691 7347807 -136934682 + L1M4 LINE L1 3073 3191 -2955 2131 102 0 22 chr12 7347839 7348153 -136934336 + AluSg SINE Alu 1 307 -3 571 236 82 32 chr12 7348609 7348829 -136933660 + MIR SINE MIR 2 232 -30 196 355 0 0 chr12 7348850 7348926 -136933563 - MIR SINE MIR -101 161 86 1925 86 119 0 chr12 7348992 7349260 -136933229 - AluSg SINE Alu 0 300 1 246 289 0 0 chr12 7349263 7349339 -136933150 - L1ME3 LINE L1 -68 6094 6019 311 310 113 7 chr12 7349362 7349504 -136932985 - HAL1 LINE L1 -1 2506 2350 896 277 28 16 chr12 7349936 7350185 -136932304 + MIR SINE MIR 9 260 -2 246 310 78 17 chr12 7351631 7351747 -136930742 - L3 LINE CR1 -125 1452 1330 215 365 151 0 chr12 7352203 7352362 -136930127 - L3 LINE CR1 -809 768 586 601 100 89 0 chr12 7353624 7353714 -136928775 + AluJb SINE Alu 172 269 -43 557 247 25 19 chr12 7353743 7353901 -136928588 + MIR SINE MIR 87 245 -17 223 336 103 54 chr12 7356267 7356618 -136925871 + L2 LINE L2 2899 3266 -6 308 244 26 0 chr12 7356632 7356710 -136925779 - MIR SINE MIR -98 110 31 537 186 150 0 chr12 7357966 7358079 -136924410 + MIR SINE MIR 63 192 -70 272 345 59 8 chr12 7359747 7359866 -136922623 - L2 LINE L2 -5 3267 3143 633 268 141 42 chr12 7360760 7360973 -136921516 - MIR SINE MIR -13 249 16 2133 102 3 13 chr12 7365923 7366228 -136916261 - AluSx SINE Alu -10 302 1 216 188 0 62 chr12 7367204 7367268 -136915221 + G-rich Low_complexity Low_complexity 4 63 0 180 231 77 39 chr12 7368428 7368506 -136913983 - L2 LINE L2 -72 3241 3161 200 259 69 0 chr12 7368532 7368590 -136913899 - MIR SINE MIR -90 172 111 2451 53 3 0 chr12 7368798 7369098 -136913391 + AluSx SINE Alu 1 301 -11 2231 87 0 6 chr12 7370444 7370755 -136911734 - AluSx SINE Alu -3 309 1 1087 79 13 0 chr12 7371246 7371398 -136911091 - AluSg/x SINE Alu -10 302 149 1609 173 13 16 chr12 7372013 7372319 -136910170 - AluJb SINE Alu -7 305 1 1754 157 49 0 chr12 7372360 7372647 -136909842 - AluSx SINE Alu -11 301 1 2173 61 46 0 chr12 7372741 7373021 -136909468 - AluY SINE Alu -18 293 1 736 155 148 7 chr12 7373308 7373463 -136909026 - MER5A DNA MER1_type -10 179 3 2082 100 7 0 chr12 7375622 7375911 -136906578 + AluSx SINE Alu 1 291 -21 196 282 175 0 chr12 7377164 7377267 -136905222 - L2 LINE L2 -57 3215 3095 1622 158 16 41 chr12 7379202 7379518 -136902971 - AluJo SINE Alu 0 312 5 1603 160 7 27 chr12 7379542 7379835 -136902654 - AluJo SINE Alu -25 287 1 255 103 0 0 chr12 7379836 7379875 -136902614 + (CCTA)n Simple_repeat Simple_repeat 1 39 0 465 105 132 0 chr12 7381298 7381374 -136901115 - AluJb SINE Alu -142 170 85 917 128 0 14 chr12 7381376 7381517 -136900972 - AluJb SINE Alu -173 139 1 222 379 73 0 chr12 7381674 7381798 -136900691 - MIR3 SINE MIR -65 143 11 24 32 0 0 chr12 7382106 7382137 -136900352 + AT_rich Low_complexity Low_complexity 1 31 0 561 168 19 0 chr12 7382150 7382257 -136900232 - FRAM SINE Alu -1 175 67 820 149 0 43 chr12 7383039 7383180 -136899309 + AluJo SINE Alu 1 135 -177 1875 134 7 7 chr12 7383762 7384060 -136898429 - AluJo SINE Alu -11 301 4 180 0 0 0 chr12 7384268 7384288 -136898201 + (A)n Simple_repeat Simple_repeat 1 20 0 2284 70 3 16 chr12 7384288 7384602 -136897887 + AluY SINE Alu 1 310 -1 2037 92 3 50 chr12 7384613 7384930 -136897559 + AluSx SINE Alu 6 307 -5 2039 117 13 0 chr12 7384942 7385240 -136897249 + AluSq SINE Alu 1 302 -11 316 243 0 0 chr12 7385240 7385310 -136897179 + Tigger2 DNA MER2_type 2649 2718 0 274 268 0 0 chr12 7385347 7385403 -136897086 - L2 LINE L2 0 3272 3217 21 0 0 0 chr12 7385711 7385732 -136896757 + AT_rich Low_complexity Low_complexity 1 21 0 2206 61 27 10 chr12 7386954 7387248 -136895241 + AluSp SINE Alu 1 299 -14 2283 32 56 3 chr12 7387423 7387707 -136894782 - AluY SINE Alu -12 299 1 1697 148 0 48 chr12 7388000 7388333 -136894156 + AluJo SINE Alu 1 312 0 2323 69 0 0 chr12 7388337 7388628 -136893861 + AluY SINE Alu 1 291 -20 360 0 0 0 chr12 7388636 7388676 -136893813 + (TAAA)n Simple_repeat Simple_repeat 2 41 0 4512 165 74 42 chr12 7388676 7388752 -136893737 - Charlie1a DNA MER1_type -1355 1406 1334 2018 128 20 0 chr12 7388752 7389056 -136893433 + AluSx SINE Alu 3 312 0 4512 165 74 42 chr12 7389056 7390025 -136892464 - Charlie1a DNA MER1_type -1427 1334 324 994 117 35 0 chr12 7390027 7390172 -136892317 + AluSx SINE Alu 4 153 -159 962 161 124 0 chr12 7390233 7390265 -136892224 + AluJb SINE Alu 87 114 -198 221 0 0 33 chr12 7390265 7390295 -136892194 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 962 161 124 0 chr12 7390295 7390455 -136892034 + AluJb SINE Alu 114 303 -9 1480 198 32 18 chr12 7390455 7390738 -136891751 - Charlie1a DNA MER1_type -1159 296 10 1161 167 39 10 chr12 7390880 7391084 -136891405 + MER2 DNA MER2_type 1 210 -135 27 29 0 0 chr12 7391084 7391118 -136891371 + AT_rich Low_complexity Low_complexity 1 34 0 289 171 0 0 chr12 7391123 7391164 -136891325 + MER2 DNA MER2_type 304 344 -1 2383 151 15 96 chr12 7391187 7391268 -136891221 - L1MB7 LINE L1 -16 6168 6082 2158 92 14 0 chr12 7391268 7391560 -136890929 + AluSc SINE Alu 2 297 -12 2383 151 15 96 chr12 7391560 7391898 -136890591 - L1MB7 LINE L1 -102 6082 5797 823 179 0 0 chr12 7391898 7392021 -136890468 - FLAM_C SINE Alu -10 123 1 2383 151 15 96 chr12 7392021 7392123 -136890366 - L1MB7 LINE L1 -387 5797 5688 774 146 0 0 chr12 7392123 7392233 -136890256 - FLAM_C SINE Alu -20 123 14 458 88 0 100 chr12 7392235 7392315 -136890174 - L1M4 LINE L1 -493 5691 5620 2087 118 0 0 chr12 7392315 7392611 -136889878 - AluSx SINE Alu -10 302 7 1473 161 47 0 chr12 7392611 7392864 -136889625 - AluJb SINE Alu -46 266 1 190 231 15 62 chr12 7392864 7392929 -136889560 - MER5C DNA MER1_type -225 99 38 416 339 148 32 chr12 7392959 7393306 -136889183 + L2 LINE L2 2100 2405 -909 2247 82 0 3 chr12 7393306 7393598 -136888891 + AluSg SINE Alu 5 295 -15 416 339 148 32 chr12 7393598 7393672 -136888817 + L2 LINE L2 2405 2469 -845 195 100 0 0 chr12 7393672 7393702 -136888787 + (CACCAT)n Simple_repeat Simple_repeat 6 35 0 416 339 148 32 chr12 7393702 7393875 -136888614 + L2 LINE L2 2469 2764 -550 966 238 101 88 chr12 7393886 7394696 -136887793 + L2 LINE L2 2503 3312 -1 283 264 0 42 chr12 7394727 7394799 -136887690 - L2 LINE L2 -7 3306 3238 538 135 0 11 chr12 7395202 7395291 -136887198 - Charlie2 DNA MER1_type -4 2858 2771 1002 186 0 0 chr12 7395298 7395470 -136887019 - AluJb SINE Alu -1 311 140 441 0 0 0 chr12 7395489 7395538 -136886951 + (TG)n Simple_repeat Simple_repeat 2 50 0 1661 130 32 40 chr12 7395538 7395690 -136886799 - AluSx SINE Alu -27 285 134 2289 88 3 0 chr12 7395690 7395995 -136886494 - AluSp SINE Alu -7 306 1 1661 130 32 40 chr12 7395995 7396119 -136886370 - AluSx SINE Alu -178 134 11 1633 196 0 0 chr12 7396139 7396425 -136886064 - AluJo SINE Alu -26 286 1 271 161 306 0 chr12 7396469 7396531 -136885958 - Charlie2a DNA MER1_type -1258 1604 1524 443 306 90 0 chr12 7396943 7397087 -136885402 - MIR3 SINE MIR -35 173 17 189 267 13 80 chr12 7397946 7398021 -136884468 + MIR SINE MIR 37 106 -156 2257 92 0 3 chr12 7398023 7398329 -136884160 - AluY SINE Alu -6 305 1 542 131 161 95 chr12 7398502 7398639 -136883850 + MER69 DNA AcHobo 2 147 -2379 388 183 0 0 chr12 7398633 7398704 -136883785 + MER69 DNA AcHobo 2447 2517 -9 * 193 321 86 25 chr12 7399345 7399426 -136883063 - MIR3 SINE MIR -22 186 101 2272 87 0 0 chr12 7400051 7400349 -136882140 + AluSg SINE Alu 1 298 -12 253 180 0 38 chr12 7400791 7400851 -136881638 - FLAM SINE Alu -9 124 76 2780 16 0 0 chr12 7400963 7401276 -136881213 + AluYb8 SINE Alu 1 313 -5 191 176 0 29 chr12 7401276 7401310 -136881179 + MER5A DNA MER1_type 44 76 -113 955 252 52 20 chr12 7401634 7401884 -136880605 - MIR SINE MIR -2 260 3 273 299 31 16 chr12 7402067 7402194 -136880295 + L2 LINE L2 2687 2815 -499 4748 137 46 28 chr12 7402271 7403257 -136879232 - L1MB7 LINE L1 -47 6137 5133 26 64 0 0 chr12 7403327 7403374 -136879115 + AT_rich Low_complexity Low_complexity 1 47 0 1795 133 0 0 chr12 7403578 7403841 -136878648 - AluSx SINE Alu -49 263 1 2186 73 3 26 chr12 7404370 7404673 -136877816 - AluSq SINE Alu -17 296 1 2386 80 0 0 chr12 7404816 7405117 -136877372 - AluSx SINE Alu -11 301 1 1125 123 0 0 chr12 7405929 7406091 -136876398 + AluSg/x SINE Alu 138 299 -13 233 237 17 34 chr12 7406266 7406325 -136876164 + MIR SINE MIR 79 136 -126 1917 109 4 0 chr12 7406417 7406683 -136875806 - AluSx SINE Alu -45 267 1 779 229 47 0 chr12 7406756 7406926 -136875563 - MER5A DNA MER1_type -1 188 11 258 267 47 0 chr12 7406976 7407062 -136875427 - MIR SINE MIR -10 252 163 223 323 54 31 chr12 7407590 7407720 -136874769 + L2 LINE L2 2911 3043 -229 183 80 0 0 chr12 7407733 7407758 -136874731 + (ATTG)n Simple_repeat Simple_repeat 4 28 0 820 196 14 14 chr12 7407758 7407906 -136874583 - AluJb SINE Alu -32 280 133 904 211 0 0 chr12 7408168 7408329 -136874160 - FRAM SINE Alu -20 156 1 1501 173 3 63 chr12 7408339 7408657 -136873832 - AluJb SINE Alu -13 299 1 1880 157 3 10 chr12 7408685 7408998 -136873491 + AluJb SINE Alu 1 311 -1 243 328 0 0 chr12 7409091 7409152 -136873337 - MIR3 SINE MIR -14 194 134 435 315 18 30 chr12 7409705 7409870 -136872619 + MIR SINE MIR 100 262 0 238 304 122 41 chr12 7409918 7410188 -136872301 + L2 LINE L2 2152 2443 -871 732 298 207 15 chr12 7410252 7410949 -136871540 - L2 LINE L2 0 3272 2431 372 291 116 63 chr12 7410972 7411385 -136871104 + L2 LINE L2 2521 2955 -359 2058 86 6 48 chr12 7411922 7412236 -136870253 + AluSc SINE Alu 1 301 -8 594 178 30 54 chr12 7412245 7412445 -136870044 - MER112 DNA MER1_type 0 260 1 1270 169 92 18 chr12 7413421 7413587 -136868902 - AluJb SINE Alu -15 297 102 2099 132 0 0 chr12 7413587 7413898 -136868591 - AluSx SINE Alu -1 311 1 1270 169 92 18 chr12 7413898 7414004 -136868485 - AluJb SINE Alu -210 102 5 470 328 64 12 chr12 7414643 7414814 -136867675 - MIR SINE MIR -80 182 3 23 0 0 0 chr12 7416192 7416215 -136866274 + GC_rich Low_complexity Low_complexity 1 23 0 25 31 0 0 chr12 7416507 7416539 -136865950 + AT_rich Low_complexity Low_complexity 1 32 0 272 246 18 0 chr12 7416675 7416732 -136865757 - L2 LINE L2 -12 3301 3244 294 326 120 11 chr12 7416948 7417132 -136865357 - MIR SINE MIR -40 222 19 1717 157 13 23 chr12 7417402 7417702 -136864787 + AluJb SINE Alu 1 297 -15 1468 85 0 10 chr12 7417714 7417914 -136864575 + AluSq SINE Alu 21 218 -95 1460 148 83 105 chr12 7417916 7418374 -136864115 - LTR7 LTR ERV1 -2 448 1 655 81 0 0 chr12 7418375 7418462 -136864027 + AluSq SINE Alu 215 301 -12 2192 113 0 0 chr12 7418462 7418762 -136863727 + AluSx SINE Alu 1 300 -12 245 163 61 0 chr12 7418772 7418821 -136863668 + Tigger3(Golem) DNA MER2_type 2568 2619 -410 3447 159 36 62 chr12 7418837 7418884 -136863605 + LTR8A LTR ERV1 34 81 -646 1905 129 14 3 chr12 7418884 7419170 -136863319 - AluSx SINE Alu -23 289 1 3447 159 36 62 chr12 7419170 7419834 -136862655 + LTR8A LTR ERV1 81 727 0 1550 115 3 92 chr12 7419834 7419979 -136862510 + Tigger3(Golem) DNA MER2_type 2617 2723 -305 2190 81 10 10 chr12 7419979 7420277 -136862212 - AluSp SINE Alu -15 298 1 1550 115 3 92 chr12 7420277 7420436 -136862053 + Tigger3(Golem) DNA MER2_type 2723 2894 -134 4143 142 63 8 chr12 7420442 7421109 -136861380 + MER72 LTR ERV1 5 708 -14 3755 168 31 0 chr12 7421109 7421805 -136860684 + ERVL-B1 LTR ERVL 627 1390 -4374 592 227 8 0 chr12 7421805 7421937 -136860552 + FLAM_C SINE Alu 1 133 -10 1977 98 9 60 chr12 7421945 7422262 -136860227 + AluSx SINE Alu 1 301 -11 1838 133 20 25 chr12 7422278 7422625 -136859864 - MER4A LTR ERV1 0 664 261 618 84 53 21 chr12 7422625 7422720 -136859769 - MER4A LTR ERV1 -566 98 1 2050 123 17 0 chr12 7422729 7423031 -136859458 - AluSx SINE Alu -5 307 1 2237 64 3 0 chr12 7423045 7423363 -136859126 - AluY SINE Alu 0 319 1 6840 93 64 14 chr12 7423363 7424457 -136858032 - MER4-int LTR ERV1 -1283 5315 4167 2161 104 7 0 chr12 7424472 7424769 -136857720 - AluSp SINE Alu -14 299 1 1332 144 0 111 chr12 7424773 7424886 -136857603 + ERVL-B1 LTR ERVL 2583 2650 -3114 1422 138 8 175 chr12 7424886 7425241 -136857248 - AluJb SINE Alu -16 296 1 1332 144 0 111 chr12 7425241 7425397 -136857092 + ERVL-B1 LTR ERVL 2650 2822 -2942 3352 151 14 35 chr12 7425442 7425469 -136857020 + ERVL-B1 LTR ERVL 2796 2822 -2942 2241 79 3 0 chr12 7425469 7425761 -136856728 - AluSg SINE Alu -17 293 1 3352 151 14 35 chr12 7425761 7426269 -136856220 + ERVL-B1 LTR ERVL 2822 3321 -2443 1741 148 0 59 chr12 7426269 7426593 -136855896 - AluJb SINE Alu -7 305 1 3352 151 14 35 chr12 7426593 7426619 -136855870 + ERVL-B1 LTR ERVL 3321 3346 -2418 2233 62 0 34 chr12 7426624 7426956 -136855533 - AluY SINE Alu 0 322 1 1667 143 0 26 chr12 7426995 7427228 -136855261 + ERVL-B1 LTR ERVL 3334 3561 -2203 2420 60 3 0 chr12 7427228 7427528 -136854961 + AluSp SINE Alu 1 301 -12 1667 143 0 26 chr12 7427528 7427559 -136854930 + ERVL-B1 LTR ERVL 3561 3591 -2173 8066 177 65 18 chr12 7427560 7429160 -136853329 - MER52A LTR ERV1 0 1755 1 1058 165 110 0 chr12 7429160 7429360 -136853129 + ERVL-B1 LTR ERVL 3589 3810 -1954 22 0 0 0 chr12 7429360 7429382 -136853107 + AT_rich Low_complexity Low_complexity 1 22 0 1925 164 6 3 chr12 7429826 7430138 -136852351 - LTR26 LTR ERV1 0 603 291 240 103 179 0 chr12 7430211 7430250 -136852239 - LTR26 LTR ERV1 -269 334 289 244 139 23 0 chr12 7430266 7430309 -136852180 - LTR26 LTR ERV1 -269 334 291 226 67 0 0 chr12 7430417 7430447 -136852042 - LTR26 LTR ERV1 -283 320 291 232 67 0 0 chr12 7430747 7430777 -136851712 - LTR26 LTR ERV1 -283 320 291 396 154 0 110 chr12 7430911 7431002 -136851487 - LTR26 LTR ERV1 -283 320 240 827 170 0 27 chr12 7431003 7431150 -136851339 - FLAM_C SINE Alu 0 143 1 1295 142 50 0 chr12 7431150 7431368 -136851121 - LTR26 LTR ERV1 -355 248 20 465 206 28 0 chr12 7431369 7431476 -136851013 - FLAM_A SINE Alu -21 121 12 11415 149 18 43 chr12 7431485 7433092 -136849397 + ERVL-B1 LTR ERVL 3794 5408 -356 263 152 0 106 chr12 7433092 7433158 -136849331 - AluJb SINE Alu -166 136 78 11415 149 18 43 chr12 7433158 7433500 -136848989 + ERVL-B1 LTR ERVL 5408 5757 -7 1423 242 85 0 chr12 7433500 7433830 -136848659 + MLT2B1 LTR ERVL 1 358 -162 1081 87 12 17 chr12 7433842 7434014 -136848475 + HSMAR2 DNA Mariner 1 171 -1131 3762 153 24 128 chr12 7434561 7436098 -136846391 + pTR5 LTR ERV1 743 2606 0 714 236 21 37 chr12 7436938 7437179 -136845310 - L1M4 LINE L1 -868 5278 5042 1525 158 12 67 chr12 7437192 7437363 -136845126 - AluSq SINE Alu -1 312 166 2093 50 0 8 chr12 7437363 7437625 -136844864 - AluY SINE Alu -51 260 1 1525 158 12 67 chr12 7437625 7437783 -136844706 - AluSq SINE Alu -147 166 1 415 289 73 113 chr12 7439126 7439262 -136843227 - HAL1b LINE L1 -993 355 215 198 91 0 0 chr12 7439262 7439295 -136843194 + (TA)n Simple_repeat Simple_repeat 2 34 0 2175 101 0 0 chr12 7439296 7439583 -136842906 - AluSx SINE Alu -21 291 5 415 289 73 113 chr12 7439583 7439814 -136842675 - HAL1b LINE L1 -1132 216 1 3747 175 20 1 chr12 7439997 7440482 -136842007 - L1MC3 LINE L1 0 7785 7282 2017 121 0 19 chr12 7440482 7440796 -136841693 - AluSg SINE Alu -2 308 1 3747 175 20 1 chr12 7440796 7441007 -136841482 - L1MC3 LINE L1 -503 7282 7076 233 200 0 0 chr12 7442056 7442096 -136840393 - Charlie8 DNA MER1_type -1009 1408 1369 272 200 31 0 chr12 7442173 7442238 -136840251 - Charlie8 DNA MER1_type -1922 495 429 2384 77 0 0 chr12 7442238 7442537 -136839952 - AluSx SINE Alu -13 299 1 2418 165 44 2 chr12 7442538 7442945 -136839544 - MSTB LTR MaLR -2 424 1 1114 103 33 27 chr12 7442945 7443129 -136839360 + L1PA16 LINE L1 5981 6165 -1 435 270 56 8 chr12 7443486 7443612 -136838877 + L2 LINE L2 3141 3272 0 718 228 220 20 chr12 7444084 7444334 -136838155 + MLT1J1 LTR MaLR 1 300 -146 706 177 0 15 chr12 7444405 7444535 -136837954 + FLAM_C SINE Alu 4 131 -2 608 245 211 56 chr12 7444947 7445270 -136837219 - MLT1G LTR MaLR -10 585 213 240 111 0 0 chr12 7445282 7445318 -136837171 + (TTCCC)n Simple_repeat Simple_repeat 2 37 0 2011 102 14 0 chr12 7445318 7445601 -136836888 - AluY SINE Alu -4 307 21 1078 104 7 7 chr12 7445602 7445756 -136836733 - AluSq SINE Alu -159 154 1 222 91 0 0 chr12 7445777 7445810 -136836679 + (TCTCC)n Simple_repeat Simple_repeat 5 37 0 659 201 32 39 chr12 7445831 7445985 -136836504 - MLT1G LTR MaLR -420 170 18 2352 58 0 16 chr12 7445985 7446295 -136836194 - AluY SINE Alu -6 305 1 19414 174 34 15 chr12 7446303 7446793 -136835696 - L1PA13 LINE L1 -1 6865 6386 1974 108 7 3 chr12 7446793 7447088 -136835401 - AluSq SINE Alu -17 296 1 19414 174 34 15 chr12 7447088 7447214 -136835275 - L1PA13 LINE L1 -480 6386 6264 1718 157 3 23 chr12 7447214 7447519 -136834970 - AluSx SINE Alu -13 299 1 19414 174 34 15 chr12 7447519 7451134 -136831355 - L1PA13 LINE L1 -602 6264 2720 2625 42 0 0 chr12 7451134 7451445 -136831044 + AluY SINE Alu 1 311 0 19414 174 34 15 chr12 7451445 7451946 -136830543 - L1PA13 LINE L1 -4146 2720 2230 1882 167 3 0 chr12 7451946 7452257 -136830232 - AluSx SINE Alu 0 312 1 19414 174 34 15 chr12 7452257 7452570 -136829919 - L1PA13 LINE L1 -4636 2230 1736 537 152 11 0 chr12 7452682 7452774 -136829715 + L1PA12 LINE L1 103 195 -7386 1767 163 10 0 chr12 7453179 7453468 -136829021 - AluJb SINE Alu -20 292 1 1795 159 0 23 chr12 7454162 7454470 -136828019 - AluJo SINE Alu -11 301 1 1463 137 60 12 chr12 7454496 7454745 -136827744 - AluJo SINE Alu -50 262 2 568 237 30 106 chr12 7454989 7455187 -136827302 - MIR SINE MIR -13 249 67 815 255 102 91 chr12 7455255 7455635 -136826854 - LTR67 LTR ERVL 0 557 168 2415 155 73 140 chr12 7455635 7456414 -136826075 + LTR8A LTR ERV1 1 727 0 815 255 102 91 chr12 7456414 7456562 -136825927 - LTR67 LTR ERVL -389 168 23 264 354 19 21 chr12 7456698 7456954 -136825535 - MIR SINE MIR -19 243 23 289 196 36 0 chr12 7457018 7457074 -136825415 + MER46C DNA MER2_type 6 63 -275 851 146 95 0 chr12 7457077 7457235 -136825254 - AluJb SINE Alu -22 290 118 764 222 73 69 chr12 7457237 7457512 -136824977 + MER46C DNA MER2_type 58 333 -5 1800 144 3 7 chr12 7459306 7459605 -136822884 + AluJo SINE Alu 1 298 -14 384 299 94 35 chr12 7460599 7460800 -136821689 - MIR SINE MIR -1 261 49 1639 152 0 31 chr12 7461061 7461350 -136821139 + AluSx SINE Alu 1 280 -32 21 36 0 0 chr12 7461828 7461856 -136820633 + AT_rich Low_complexity Low_complexity 1 28 0 999 159 75 31 chr12 7461862 7462089 -136820400 - L1PB2 LINE L1 0 6151 5915 1530 184 0 46 chr12 7462683 7462988 -136819501 - AluJo SINE Alu -21 291 1 604 183 7 58 chr12 7463367 7463504 -136818985 + FLAM_A SINE Alu 2 131 -2 236 333 35 0 chr12 7465281 7465368 -136817121 - L3 LINE CR1 -27 1550 1461 396 296 99 29 chr12 7466345 7466517 -136815972 - MIR SINE MIR -57 205 22 321 118 0 0 chr12 7468601 7468652 -136813837 + (A)n Simple_repeat Simple_repeat 1 51 0 1135 143 5 21 chr12 7468675 7468864 -136813625 + AluJo SINE Alu 12 197 -115 395 279 43 57 chr12 7668932 7669072 -136613417 + L2 LINE L2 3176 3313 0 465 224 52 9 chr12 7669438 7669554 -136612935 - MLT1I LTR MaLR 0 409 289 299 230 14 14 chr12 7669630 7669704 -136612785 - MLT1J2 LTR MaLR -277 173 100 2158 95 95 104 chr12 7669735 7670167 -136612322 + MSTA LTR MaLR 1 428 0 328 62 31 47 chr12 7670240 7670304 -136612185 + (TTTC)n Simple_repeat Simple_repeat 2 64 0 780 255 0 0 chr12 7670323 7670480 -136612009 - AluJb SINE Alu -20 292 136 342 310 64 32 chr12 7670620 7670807 -136611682 + MIR SINE MIR 65 257 -5 2111 124 0 0 chr12 7671177 7671459 -136611030 - AluSx SINE Alu -2 310 29 814 212 18 12 chr12 7671472 7671642 -136610847 + MER5B DNA MER1_type 8 178 0 1160 284 167 7 chr12 7671644 7672080 -136610409 + L2 LINE L2 2804 3309 -4 449 263 127 0 chr12 7672447 7672565 -136609924 + MIR SINE MIR 28 160 -102 216 335 82 6 chr12 7672751 7672909 -136609580 + L2 LINE L2 1555 1724 -1590 1298 177 9 0 chr12 7672954 7673180 -136609309 - AluJo SINE Alu 0 312 85 776 348 71 40 chr12 7673186 7673767 -136608722 + L2 LINE L2 1774 2372 -942 431 295 8 8 chr12 7673772 7673894 -136608595 + L2 LINE L2 3191 3312 -1 364 273 84 35 chr12 7674088 7674231 -136608258 + MIR SINE MIR 105 254 -8 282 271 124 40 chr12 7674510 7674674 -136607815 - MIR SINE MIR -56 206 30 403 256 176 47 chr12 7675286 7675643 -136606846 - L1MC5 LINE L1 -144 7898 7522 266 256 49 0 chr12 7675691 7675773 -136606716 + L1ME LINE L1 5510 5595 -526 516 279 294 0 chr12 7675804 7676120 -136606369 - L1MC4 LINE L1 -548 7494 7086 42445 41 5 1 chr12 7676215 7682347 -136600142 - L1PA2 LINE L1 0 6155 4 1070 252 39 19 chr12 7682358 7682703 -136599786 - L1MC4 LINE L1 -884 6924 6565 36 0 0 0 chr12 7682703 7682739 -136599750 + AT_rich Low_complexity Low_complexity 1 36 0 432 249 73 4 chr12 7682739 7682910 -136599579 - L1MC4 LINE L1 -784 5362 5211 1211 232 61 7 chr12 7683091 7683401 -136599088 - MER46C DNA MER2_type -10 328 2 2474 100 0 0 chr12 7683446 7683755 -136598734 - AluY SINE Alu 0 311 3 3718 86 125 4 chr12 7684027 7684571 -136597918 - LTR66 LTR ERVL 0 610 1 1729 181 0 14 chr12 7684744 7685050 -136597439 - AluJb SINE Alu 0 312 12 2014 141 0 3 chr12 7685155 7685487 -136597002 - AluSx SINE Alu 0 331 1 2092 115 0 44 chr12 7686081 7686278 -136596211 - AluSx SINE Alu 0 321 141 2505 89 0 3 chr12 7686278 7686591 -136595898 - AluSp SINE Alu -1 312 1 2092 115 0 44 chr12 7686591 7686727 -136595762 - AluSx SINE Alu -180 141 1 621 88 0 0 chr12 7686727 7686818 -136595671 + MER2 DNA MER2_type 120 210 -135 21 0 0 0 chr12 7686841 7686862 -136595627 + AT_rich Low_complexity Low_complexity 1 21 0 452 321 82 25 chr12 7686939 7687257 -136595232 - L2 LINE L2 -1016 2298 1963 200 286 14 54 chr12 7690684 7690831 -136591658 + GA-rich Low_complexity Low_complexity 5 145 0 631 284 68 16 chr12 7693238 7693428 -136589061 + MIR SINE MIR 51 250 -12 297 225 28 0 chr12 7696410 7696481 -136586008 + MIR SINE MIR 43 115 -93 360 0 0 0 chr12 7697024 7697064 -136585425 + (TG)n Simple_repeat Simple_repeat 1 40 0 243 0 0 0 chr12 7697063 7697090 -136585399 + (GA)n Simple_repeat Simple_repeat 1 27 0 * 237 319 118 21 chr12 7697368 7697512 -136584977 + L2 LINE L2 2328 2485 -829 315 0 0 0 chr12 7697526 7697561 -136584928 + (CA)n Simple_repeat Simple_repeat 1 35 0 216 0 0 0 chr12 7697561 7697585 -136584904 + (CCA)n Simple_repeat Simple_repeat 3 26 0 801 240 112 0 chr12 7697617 7697859 -136584630 + MER33 DNA MER1_type 1 269 -55 294 314 95 45 chr12 7697871 7697993 -136584496 + L2 LINE L2 2511 2626 -688 859 143 8 15 chr12 7697993 7698126 -136584363 - FLAM_C SINE Alu 0 133 2 294 314 95 45 chr12 7698126 7698245 -136584244 + L2 LINE L2 2626 2764 -550 2041 152 0 0 chr12 7698871 7699173 -136583316 + AluSx SINE Alu 1 302 -10 273 98 0 0 chr12 7701959 7702000 -136580489 + (CA)n Simple_repeat Simple_repeat 1 41 0 2274 111 0 7 chr12 7703020 7703326 -136579163 - AluSx SINE Alu 0 312 9 261 139 0 0 chr12 7705139 7705182 -136577307 + (TTC)n Simple_repeat Simple_repeat 3 45 0 687 115 0 0 chr12 7705197 7705293 -136577196 - U6 snRNA snRNA -10 97 2 192 308 0 0 chr12 7705646 7705698 -136576791 + MIR SINE MIR 79 130 -132 2017 211 84 16 chr12 7706688 7707190 -136575299 + MLT1F LTR MaLR 1 536 -6 2239 127 102 13 chr12 7708001 7708394 -136574095 + MSTA LTR MaLR 1 428 0 314 360 131 0 chr12 7708884 7709059 -136573430 - L2 LINE L2 -50 3222 3025 541 226 0 9 chr12 7709148 7709263 -136573226 - MIR SINE MIR -110 152 39 775 216 119 10 chr12 7709284 7709478 -136573011 - MER20 DNA MER1_type -4 215 1 834 292 20 20 chr12 7709523 7709773 -136572716 - MIR SINE MIR -11 251 2 215 329 68 44 chr12 7709822 7710071 -136572418 - L2 LINE L2 -401 2913 2659 457 225 17 67 chr12 7711153 7711273 -136571216 - MER81 DNA DNA 0 114 1 553 178 0 9 chr12 7711387 7711494 -136570995 - Charlie1 DNA MER1_type -33 2728 2623 * 822 219 47 21 chr12 7711481 7711714 -136570775 - Charlie1 DNA MER1_type -2522 239 1 486 288 92 27 chr12 7711714 7711826 -136570663 - L1MEc LINE L1 -4332 2389 2286 2857 143 106 33 chr12 7711826 7712190 -136570299 - MER1A DNA MER1_type -2173 527 116 207 0 0 0 chr12 7712190 7712213 -136570276 + (CTG)n Simple_repeat Simple_repeat 1 23 0 2857 143 106 33 chr12 7712213 7712339 -136570150 - MER1A DNA MER1_type -2584 116 1 486 288 92 27 chr12 7712339 7712521 -136569968 - L1MEc LINE L1 -4435 2286 2076 880 197 0 0 chr12 7712522 7712669 -136569820 - AluJb SINE Alu -27 285 139 719 230 104 49 chr12 7712672 7713001 -136569488 - L1MEc LINE L1 -4529 2011 1682 609 212 9 0 chr12 7713392 7713505 -136568984 - MER81 DNA DNA 0 114 1 24 0 0 0 chr12 7715077 7715101 -136567388 + GC_rich Low_complexity Low_complexity 1 24 0 247 314 88 25 chr12 7716212 7716371 -136566118 + MIR SINE MIR 30 198 -64 243 0 0 0 chr12 7716615 7716642 -136565847 + (A)n Simple_repeat Simple_repeat 1 27 0 1765 296 80 38 chr12 7716828 7717414 -136565075 - L2 LINE L2 -2 3311 2751 2324 84 11 0 chr12 7717414 7717729 -136564760 - AluSc SINE Alu 0 318 1 1765 296 80 38 chr12 7717729 7718311 -136564178 - L2 LINE L2 -562 2751 2091 1541 169 28 0 chr12 7718438 7718692 -136563797 + AluJo SINE Alu 22 282 -30 270 301 0 46 chr12 7720342 7720495 -136561994 + CT-rich Low_complexity Low_complexity 5 150 0 183 80 0 0 chr12 7720496 7720521 -136561968 + (T)n Simple_repeat Simple_repeat 1 25 0 275 319 11 0 chr12 7720532 7720626 -136561863 + CT-rich Low_complexity Low_complexity 1 95 0 401 285 40 75 chr12 7721133 7721333 -136561156 - MIR3 SINE MIR -7 201 9 193 312 21 54 chr12 7721375 7721468 -136561021 + MIR3 SINE MIR 12 101 -107 714 189 137 16 chr12 7721547 7721737 -136560752 + MER58A DNA MER1_type 3 215 -9 2417 72 16 20 chr12 7721738 7722042 -136560447 + AluSg SINE Alu 1 303 -7 309 314 110 8 chr12 7722223 7722341 -136560148 + MIR SINE MIR 133 262 0 255 152 0 0 chr12 7723133 7723179 -136559310 + (TG)n Simple_repeat Simple_repeat 2 47 0 543 381 77 21 chr12 7723339 7723946 -136558543 + L2 LINE L2 2140 2780 -534 722 113 0 0 chr12 7723949 7724046 -136558443 + AluJ/FLAM SINE Alu 2 98 -214 1151 137 0 0 chr12 7724054 7724215 -136558274 + FRAM SINE Alu 15 175 -1 683 258 85 29 chr12 7724818 7725148 -136557341 + L1ME LINE L1 5278 5629 -492 327 222 133 22 chr12 7725206 7725341 -136557148 - L1MC4 LINE L1 -1 8041 7892 4694 231 88 55 chr12 7725483 7727727 -136554762 - L1ME2 LINE L1 -10 6154 3806 2260 94 33 0 chr12 7727727 7728026 -136554463 - AluSc SINE Alu 0 309 1 4694 231 88 55 chr12 7728026 7728524 -136553965 - L1ME2 LINE L1 -2358 3806 3326 2056 112 4 4 chr12 7728529 7728797 -136553692 + AluSp SINE Alu 14 281 -32 531 0 0 0 chr12 7728799 7728858 -136553631 + (GAAA)n Simple_repeat Simple_repeat 2 60 0 305 286 77 11 chr12 7732060 7732151 -136550338 - L2 LINE L2 -14 3258 3162 365 219 134 63 chr12 7732364 7732416 -136550073 - L1ME4a LINE L1 -33 6088 6041 2098 145 10 3 chr12 7732416 7732726 -136549763 + AluJb SINE Alu 1 312 0 365 219 134 63 chr12 7732726 7732911 -136549578 - L1ME4a LINE L1 -80 6041 5834 766 275 45 38 chr12 7732914 7733201 -136549288 + MARNA DNA Mariner 129 417 -169 955 240 33 8 chr12 7733294 7733536 -136548953 - MIR SINE MIR 0 262 15 198 0 0 0 chr12 7733730 7733752 -136548737 + (TTTTA)n Simple_repeat Simple_repeat 2 23 0 1643 175 41 0 chr12 7733816 7734085 -136548404 - AluJo SINE Alu -30 282 3 416 246 173 11 chr12 7735238 7735373 -136547116 + MER5B DNA MER1_type 17 188 -1 192 40 0 0 chr12 7739064 7739089 -136543400 + (CTGGGG)n Simple_repeat Simple_repeat 2 26 0 249 33 0 0 chr12 7739458 7739488 -136543001 + (TG)n Simple_repeat Simple_repeat 1 30 0 354 336 153 23 chr12 7740439 7740877 -136541612 + L2 LINE L2 2181 2675 -639 342 260 55 0 chr12 7740880 7741015 -136541474 + (CCTG)n Simple_repeat Simple_repeat 1 142 0 444 274 246 28 chr12 7741205 7741563 -136540926 + L2 LINE L2 2827 3262 -10 247 235 204 15 chr12 7744346 7744478 -136538011 + MIR SINE MIR 18 174 -88 189 291 0 18 chr12 7744680 7744735 -136537754 + MIR SINE MIR 1 54 -208 1211 117 0 0 chr12 7744881 7745043 -136537446 - AluSp SINE Alu -18 295 134 2251 87 20 7 chr12 7745044 7745342 -136537147 - AluY SINE Alu -9 302 1 200 100 25 0 chr12 7746371 7746411 -136536078 + (CA)n Simple_repeat Simple_repeat 1 41 0 221 0 35 0 chr12 7746411 7746440 -136536049 + (CAG)n Simple_repeat Simple_repeat 1 30 0 607 173 7 65 chr12 7747601 7747740 -136534749 + FLAM_A SINE Alu 11 141 -1 41 66 0 0 chr12 7747763 7747839 -136534650 + AT_rich Low_complexity Low_complexity 1 76 0 2005 155 0 3 chr12 7747889 7748186 -136534303 + AluJo SINE Alu 1 296 -16 4462 256 102 52 chr12 7748196 7748604 -136533885 - HAL1 LINE L1 -56 2451 2065 216 0 0 0 chr12 7748604 7748628 -136533861 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 4462 256 102 52 chr12 7748628 7749789 -136532700 - HAL1 LINE L1 -442 2065 963 2301 97 3 10 chr12 7749789 7750089 -136532400 + AluSx SINE Alu 1 298 -14 4462 256 102 52 chr12 7750089 7750390 -136532099 - HAL1 LINE L1 -1544 963 678 3342 171 36 3 chr12 7750390 7750976 -136531513 - MER6A DNA MER2_type 0 605 1 4462 256 102 52 chr12 7750976 7751433 -136531056 - HAL1 LINE L1 -1829 678 6 467 219 67 0 chr12 7751667 7751772 -136530717 + L2 LINE L2 3161 3272 0 320 287 74 25 chr12 7751924 7752046 -136530443 - MIR SINE MIR -65 143 16 205 228 53 18 chr12 7752484 7752541 -136529948 - L2 LINE L2 -536 2778 2720 350 342 0 27 chr12 7752852 7752963 -136529526 - L2 LINE L2 -17 3255 3148 481 269 45 0 chr12 7753605 7753761 -136528728 - Charlie8 DNA MER1_type -2159 258 96 1314 146 10 5 chr12 7753789 7753994 -136528495 + AluJo SINE Alu 1 206 -106 632 130 19 9 chr12 7754107 7754215 -136528274 - AluSq/x SINE Alu -203 110 2 757 310 98 9 chr12 7754218 7754566 -136527923 - L1MC/D LINE L1 -1984 5824 5446 263 280 67 0 chr12 7754598 7754673 -136527816 - Charlie8 DNA MER1_type -2331 86 7 2155 97 0 94 chr12 7755473 7755814 -136526675 - AluSq SINE Alu -4 309 1 2695 171 88 3 chr12 7755814 7756382 -136526107 - L1MB7 LINE L1 -47 6137 5522 2564 48 0 13 chr12 7756428 7756742 -136525747 - AluY SINE Alu -1 310 1 2119 90 13 13 chr12 7757146 7757445 -136525044 + AluSq SINE Alu 1 299 -14 495 267 47 20 chr12 7758866 7759016 -136523473 - MIR SINE MIR -44 218 65 2269 89 0 14 chr12 7759316 7759609 -136522880 + AluSc SINE Alu 1 289 -20 671 227 0 0 chr12 7759854 7759973 -136522516 + FLAM_A SINE Alu 3 121 -12 213 231 0 0 chr12 7760159 7760211 -136522278 + (TA)n Simple_repeat Simple_repeat 2 53 0 180 0 0 0 chr12 7760724 7760744 -136521745 + (CA)n Simple_repeat Simple_repeat 1 20 0 188 300 54 54 chr12 7760974 7761104 -136521385 + L2 LINE L2 3125 3254 -18 507 278 86 15 chr12 7761244 7761442 -136521047 - L1ME LINE L1 -492 5629 5418 221 138 0 0 chr12 7761488 7761517 -136520972 + (T)n Simple_repeat Simple_repeat 1 29 0 1200 180 38 70 chr12 7762570 7762625 -136519864 - MLT1A1 LTR MaLR 0 365 310 3645 146 4 2 chr12 7762625 7763151 -136519338 + MER1A DNA MER1_type 1 527 0 1200 180 38 70 chr12 7763151 7763411 -136519078 - MLT1A1 LTR MaLR -55 310 60 356 117 17 0 chr12 7763405 7763465 -136519024 + MADE1 DNA Mariner 20 80 0 * 460 110 0 85 chr12 7763465 7763542 -136518947 - MLT1A1 LTR MaLR -304 70 1 25 0 0 0 chr12 7764189 7764214 -136518275 + AT_rich Low_complexity Low_complexity 1 25 0 1395 151 41 50 chr12 7764384 7764527 -136517962 - MER66-int LTR ERV1 -2482 4194 4051 1882 116 0 28 chr12 7764527 7764812 -136517677 - AluSx SINE Alu 0 312 36 1395 151 41 50 chr12 7764812 7764986 -136517503 - MER66-int LTR ERV1 -2625 4051 3880 * 5329 165 29 11 chr12 7764969 7766430 -136516059 + MER66-int LTR ERV1 647 2169 -4507 2797 169 74 16 chr12 7766418 7766986 -136515503 + MER66-int LTR ERV1 2336 2936 -3740 * 5015 223 48 28 chr12 7767241 7767982 -136514507 + MER66-int LTR ERV1 2780 3561 -3115 3946 91 0 8 chr12 7767982 7768497 -136513992 - MER9 LTR ERVK 0 511 1 5015 223 48 28 chr12 7768497 7769094 -136513395 + MER66-int LTR ERV1 3561 4145 -2531 1050 168 19 0 chr12 7769128 7769289 -136513200 - FRAM SINE Alu -11 165 2 336 246 36 87 chr12 7769527 7769665 -136512824 + HAL1b LINE L1 652 782 -566 2938 139 60 24 chr12 7769958 7770492 -136511997 - L1MC/D LINE L1 -537 5807 5255 2282 146 0 36 chr12 7770497 7770909 -136511580 - L1MC2 LINE L1 -123 6221 5825 447 152 0 0 chr12 7770913 7770992 -136511497 + CT-rich Low_complexity Low_complexity 4 82 0 719 135 75 23 chr12 7770995 7771128 -136511361 + MER74A LTR ERVL 419 558 0 334 230 46 23 chr12 7771132 7771219 -136511270 - L2 LINE L2 -32 3281 3193 6043 137 54 7 chr12 7772172 7773276 -136509213 - L1MC1 LINE L1 0 6333 5181 181 245 82 51 chr12 7773618 7773716 -136508773 - MIR3 SINE MIR -9 199 99 1205 196 68 0 chr12 7773796 7774062 -136508427 - L1MDa LINE L1 -4368 2172 1889 381 220 11 11 chr12 7774065 7774156 -136508333 + MLT1D LTR MaLR 9 99 -406 544 197 0 8 chr12 7774166 7774288 -136508201 - L1M4 LINE L1 -825 5321 5201 255 170 0 0 chr12 7774288 7774335 -136508154 - MLT1D LTR MaLR -9 496 450 1101 213 32 29 chr12 7774413 7774690 -136507799 + MLT1D LTR MaLR 111 388 -117 2625 188 9 0 chr12 7774703 7775167 -136507322 - L1MDa LINE L1 -6052 488 21 477 0 0 0 chr12 7775178 7775231 -136507258 + (CA)n Simple_repeat Simple_repeat 2 54 0 1832 122 42 96 chr12 7775459 7775793 -136506696 + MLT1A1 LTR MaLR 1 313 -52 2263 108 10 0 chr12 7775793 7776098 -136506391 - AluSx SINE Alu 0 312 5 1832 122 42 96 chr12 7776098 7776149 -136506340 + MLT1A1 LTR MaLR 313 365 0 1057 153 99 132 chr12 7776602 7776953 -136505536 - MSTD LTR MaLR 0 396 1 2416 103 0 3 chr12 7777012 7777322 -136505167 + AluSp SINE Alu 1 309 -4 1941 136 7 33 chr12 7777401 7777702 -136504787 + AluSx SINE Alu 1 293 -19 3312 138 46 4 chr12 7778044 7778546 -136503943 + LTR17 LTR ERV1 256 778 -2 4995 94 9 29 chr12 7778548 7779249 -136503240 + HERV17 LTR ERV1 2 688 -7938 9578 61 4 5 chr12 7779706 7780870 -136501619 + HERV17 LTR ERV1 1535 2697 -5929 11747 63 11 22 chr12 7781006 7782506 -136499983 + HERV17 LTR ERV1 3096 4578 -4048 589 28 0 0 chr12 7782494 7782565 -136499924 + HERV17 LTR ERV1 7478 7548 -1078 * 2310 59 21 3 chr12 7782555 7782842 -136499647 + HERV17 LTR ERV1 8335 8626 0 2421 94 0 9 chr12 7782842 7783171 -136499318 + LTR17 LTR ERV1 1 326 -454 183 80 0 0 chr12 7783171 7783196 -136499293 + (GAAAA)n Simple_repeat Simple_repeat 3 27 0 274 196 0 0 chr12 7783395 7783446 -136499043 + MIR SINE MIR 3 53 -209 1394 175 36 62 chr12 7783464 7783519 -136498970 + MER58B DNA MER1_type 37 92 -2328 1911 144 18 0 chr12 7783519 7783804 -136498685 + AluSx SINE Alu 1 290 -22 1394 175 36 62 chr12 7783804 7784057 -136498432 + MER58B DNA MER1_type 92 337 -4 889 203 43 0 chr12 7784060 7784247 -136498242 + MIR SINE MIR 46 240 -22 29 0 0 0 chr12 7784301 7784330 -136498159 + AT_rich Low_complexity Low_complexity 1 29 0 266 314 116 0 chr12 7784622 7784743 -136497746 + MIR SINE MIR 128 262 0 214 220 51 0 chr12 7785925 7785984 -136496505 - MIR SINE MIR -62 146 85 204 274 12 24 chr12 7786462 7786546 -136495943 + G-rich Low_complexity Low_complexity 1 83 0 195 161 0 0 chr12 7787420 7787451 -136495038 - MIR SINE MIR -65 143 113 604 307 35 8 chr12 7788780 7789034 -136493455 - MIR SINE MIR -1 261 1 381 313 73 28 chr12 7789688 7789867 -136492622 - MIR SINE MIR -45 217 31 2068 128 20 0 chr12 7789868 7790166 -136492323 - AluSx SINE Alu -8 304 1 1204 220 32 16 chr12 7790902 7791211 -136491278 - L1MD2 LINE L1 -1 6358 6024 423 392 0 0 chr12 7791591 7791739 -136490750 - MIR SINE MIR -107 155 8 197 167 60 30 chr12 7792647 7792815 -136489674 + (TTATA)n Simple_repeat Simple_repeat 5 177 0 344 162 45 45 chr12 7792830 7793066 -136489423 + (TA)n Simple_repeat Simple_repeat 1 236 0 300 149 21 129 chr12 7793071 7793265 -136489224 + (TATAA)n Simple_repeat Simple_repeat 5 177 0 253 170 16 129 chr12 7793279 7793473 -136489016 + (TATAA)n Simple_repeat Simple_repeat 5 176 0 * 259 222 62 25 chr12 7793425 7793587 -136488902 + (CATATA)n Simple_repeat Simple_repeat 3 170 0 * 391 150 39 61 chr12 7793499 7793679 -136488810 + (TATATG)n Simple_repeat Simple_repeat 5 180 0 232 184 67 21 chr12 7793696 7793986 -136488503 + (TATAA)n Simple_repeat Simple_repeat 1 303 0 6965 50 13 52 chr12 7795077 7796770 -136485719 - SVA Other Other -683 1384 34 252 0 0 0 chr12 7796774 7796802 -136485687 + (GGGAGA)n Simple_repeat Simple_repeat 6 33 0 524 224 86 9 chr12 7796871 7796987 -136485502 + FLAM_A SINE Alu 4 128 -14 492 242 22 11 chr12 7797026 7797204 -136485285 + (CATA)n Simple_repeat Simple_repeat 1 180 0 2098 122 3 7 chr12 7798745 7799039 -136483450 + AluSp SINE Alu 1 293 -20 378 61 0 0 chr12 7799052 7799101 -136483388 + (CACTG)n Simple_repeat Simple_repeat 4 52 0 388 293 26 17 chr12 7799101 7799217 -136483272 + MER5A DNA MER1_type 73 189 0 1186 214 69 33 chr12 7800704 7801007 -136481482 + L1 LINE L1 4788 5101 -1045 1604 164 96 3 chr12 7802030 7802342 -136480147 + MER58B DNA MER1_type 1 341 0 740 183 0 30 chr12 7805109 7805240 -136477249 + FLAM_A SINE Alu 1 127 -6 2332 107 3 0 chr12 7807826 7808135 -136474354 - AluSp SINE Alu -3 310 1 635 168 35 0 chr12 7808179 7808292 -136474197 - FLAM_C SINE Alu -25 118 2 224 24 0 95 chr12 7808335 7808377 -136474112 + (A)n Simple_repeat Simple_repeat 1 38 0 2334 82 74 10 chr12 7808674 7809077 -136473412 + L1PA3 LINE L1 5724 6152 -3 5165 133 37 2 chr12 7809435 7810254 -136472235 + L1PA16 LINE L1 5320 6166 0 37 39 0 0 chr12 7810275 7810326 -136472163 + AT_rich Low_complexity Low_complexity 1 51 0 2437 75 0 0 chr12 7810326 7810618 -136471871 - AluSq SINE Alu -21 292 1 551 240 141 32 chr12 7811617 7811959 -136470530 - MLT1F LTR MaLR 0 542 100 396 173 0 91 chr12 7812390 7812500 -136469989 - MLT1F LTR MaLR -409 140 41 3127 107 22 6 chr12 7813404 7813892 -136468597 - L1MA3 LINE L1 0 6305 5810 469 302 107 13 chr12 7814290 7814515 -136467974 + MIR SINE MIR 17 262 0 1706 289 59 12 chr12 7814553 7815116 -136467373 + ERVL LTR ERVL 3576 4164 -1600 * 2043 294 23 14 chr12 7815109 7815759 -136466730 + ERVL LTR ERVL 4338 4993 -771 2167 104 0 10 chr12 7816583 7816872 -136465617 - AluSq SINE Alu -27 286 1 1111 240 20 20 chr12 7817127 7817373 -136465116 + MER69 DNA AcHobo 1 246 -980 428 214 45 0 chr12 7817368 7817457 -136465032 + MER69 DNA AcHobo 2434 2526 0 * 1965 122 11 7 chr12 7817601 7817887 -136464602 - AluSx SINE Alu -25 287 1 726 267 35 70 chr12 7818412 7818727 -136463762 - MLT1I LTR MaLR 0 409 106 327 333 82 6 chr12 7819051 7819210 -136463279 - L2 LINE L2 0 3313 3143 201 278 66 93 chr12 7819391 7819542 -136462947 - MIR SINE MIR -114 148 2 241 26 53 0 chr12 7819913 7819951 -136462538 + (TTA)n Simple_repeat Simple_repeat 3 42 0 8096 25 8 3 chr12 7819951 7821674 -136460815 - L1PA5 LINE L1 -18 6136 4405 809 149 0 0 chr12 7822724 7822845 -136459644 + FLAM_C SINE Alu 1 121 -12 5976 66 1 0 chr12 7823779 7824595 -136457894 - L1P LINE L1 -881 5265 4449 727 376 112 24 chr12 7824599 7825047 -136457442 - L2 LINE L2 -1922 1392 985 1180 217 151 30 chr12 7825047 7825219 -136457270 - MLT1A2 LTR MaLR 0 374 224 1341 224 3 33 chr12 7825219 7825522 -136456967 - AluJo SINE Alu -17 295 2 1180 217 151 30 chr12 7825522 7825681 -136456808 - MLT1A2 LTR MaLR -150 224 3 727 376 112 24 chr12 7825681 7826297 -136456192 - L2 LINE L2 -2329 985 235 258 261 0 0 chr12 7827410 7827475 -136455014 - MLT1K LTR MaLR 0 588 524 773 162 8 0 chr12 7828114 7828231 -136454258 + FLAM_C SINE Alu 1 118 -15 21 0 0 0 chr12 7828236 7828257 -136454232 + AT_rich Low_complexity Low_complexity 1 21 0 323 329 138 0 chr12 7828311 7828478 -136454011 - L2 LINE L2 -151 3121 2932 325 265 0 29 chr12 7829082 7829184 -136453305 - L1MC5 LINE L1 -50 7911 7813 1119 216 72 61 chr12 7829216 7829772 -136452717 - L1MC5 LINE L1 -214 7747 7186 363 294 169 22 chr12 7830722 7830953 -136451536 - L1M4 LINE L1 -2196 3950 3686 963 169 71 83 chr12 7831054 7831323 -136451166 + L1 LINE L1 3221 3487 -2659 2183 110 7 13 chr12 7831323 7831633 -136450856 + AluSx SINE Alu 4 311 -1 963 169 71 83 chr12 7831633 7831701 -136450788 + L1 LINE L1 3487 3554 -2592 * 2385 156 13 61 chr12 7831695 7832235 -136450254 + L1 LINE L1 3866 4379 -1767 2008 134 10 0 chr12 7832238 7832530 -136449959 + AluSx SINE Alu 1 295 -17 956 188 33 62 chr12 7832534 7832806 -136449683 + L1MA9 LINE L1 5946 6209 -125 2492 233 34 39 chr12 7832890 7833791 -136448698 + L1M4 LINE L1 3502 4398 -1748 290 293 105 44 chr12 7833810 7834039 -136448450 + MARNA DNA Mariner 254 496 -90 511 280 97 24 chr12 7834364 7834571 -136447918 - MIR SINE MIR -27 235 14 539 262 92 44 chr12 7834983 7835070 -136447419 - L1MC4 LINE L1 -40 8002 7921 2336 100 0 0 chr12 7835070 7835370 -136447119 - AluSx SINE Alu -12 300 1 539 262 92 44 chr12 7835370 7835671 -136446818 - L1MC4 LINE L1 -121 7921 7595 1725 171 3 26 chr12 7835853 7836162 -136446327 + AluJb SINE Alu 1 302 -10 262 217 68 62 chr12 7836311 7836472 -136446017 - L1ME4a LINE L1 -4 6117 5956 2085 104 3 17 chr12 7836564 7836863 -136445626 - AluSg SINE Alu -15 295 1 239 327 36 12 chr12 7836871 7837039 -136445450 - L1ME4a LINE L1 -296 5825 5654 22 0 0 0 chr12 7837071 7837093 -136445396 + AT_rich Low_complexity Low_complexity 1 22 0 283 291 9 45 chr12 7837621 7837731 -136444758 - MIR SINE MIR -33 229 124 404 223 81 5 chr12 7838381 7838525 -136443964 - L1ME3 LINE L1 -1 6163 6009 1160 205 63 22 chr12 7838965 7839242 -136443247 - L1ME3 LINE L1 -167 5995 5702 1568 230 43 77 chr12 7839242 7839876 -136442613 + LTR9 LTR ERV1 1 612 0 1160 205 63 22 chr12 7839876 7839915 -136442574 - L1ME3 LINE L1 -460 5702 5666 992 128 0 0 chr12 7941685 7941826 -136340663 + AluSg/x SINE Alu 154 294 -18 2180 82 44 3 chr12 7941829 7942145 -136340344 - MER4E LTR ERV1 -316 450 122 1995 121 6 13 chr12 7942187 7942323 -136340166 + AluSq SINE Alu 1 136 -177 2145 112 0 0 chr12 7942323 7942626 -136339863 + AluSp SINE Alu 1 303 -10 1995 121 6 13 chr12 7942626 7942803 -136339686 + AluSq SINE Alu 136 312 -1 2024 148 0 0 chr12 7942812 7943122 -136339367 + AluSx SINE Alu 1 310 -2 1980 125 4 0 chr12 7943122 7943437 -136339052 + AluSx SINE Alu 3 318 0 411 265 34 17 chr12 7943437 7943554 -136338935 - L1M4 LINE L1 -1289 4857 4739 2339 68 0 0 chr12 7943554 7943861 -136338628 - AluY SINE Alu -4 307 1 2016 99 14 10 chr12 7943867 7944161 -136338328 - AluSq SINE Alu -18 295 1 1279 150 40 0 chr12 7944164 7944391 -136338098 - L1MB2 LINE L1 -286 5885 5650 1657 175 16 10 chr12 7944391 7944700 -136337789 - AluJo SINE Alu -1 311 1 606 213 25 8 chr12 7944708 7944830 -136337659 + FRAM SINE Alu 24 147 -29 183 129 0 0 chr12 7945012 7945043 -136337446 + (TG)n Simple_repeat Simple_repeat 2 32 0 268 144 0 24 chr12 7945154 7945204 -136337285 - Alu SINE Alu -261 39 1 2123 71 60 0 chr12 7945517 7945800 -136336689 + AluSx SINE Alu 1 300 -12 820 188 12 0 chr12 7945800 7945960 -136336529 + AluSg/x SINE Alu 132 293 -17 186 71 0 0 chr12 7946076 7946104 -136336385 + (TTTG)n Simple_repeat Simple_repeat 2 29 0 2492 44 0 0 chr12 7946149 7946447 -136336042 + AluY SINE Alu 1 298 -13 199 244 0 139 chr12 7946514 7946542 -136335947 - L2 LINE L2 -582 2732 2702 1304 178 36 39 chr12 7946542 7946851 -136335638 - AluJo SINE Alu -4 308 1 199 244 0 139 chr12 7946851 7946908 -136335581 - L2 LINE L2 -612 2702 2659 2047 124 7 0 chr12 7947434 7947740 -136334749 - AluSx SINE Alu 0 312 5 1991 108 7 0 chr12 7947998 7948286 -136334203 + AluSx SINE Alu 1 290 -22 255 173 0 0 chr12 7948500 7948552 -136333937 + (TATG)n Simple_repeat Simple_repeat 1 52 0 1515 150 14 38 chr12 7948558 7948845 -136333644 - AluJo SINE Alu -12 300 21 1046 106 0 0 chr12 7948865 7949007 -136333482 + AluSg/x SINE Alu 121 262 -50 1063 191 76 142 chr12 7949077 7949548 -136332941 - MER31B LTR ERV1 -20 446 7 1186 151 82 58 chr12 7949840 7949872 -136332617 - AluJb SINE Alu -1 311 281 477 0 0 0 chr12 7949872 7949925 -136332564 + (TTA)n Simple_repeat Simple_repeat 2 54 0 1186 151 82 58 chr12 7949925 7950183 -136332306 - AluJb SINE Alu -31 281 14 508 173 71 39 chr12 7950218 7950345 -136332144 - FLAM_A SINE Alu -2 131 1 256 93 0 0 chr12 7950375 7950418 -136332071 - HY3 scRNA scRNA -2 99 57 2061 126 3 0 chr12 7950446 7950747 -136331742 + AluSg SINE Alu 2 303 -7 2100 101 0 20 chr12 7950749 7951079 -136331410 + AluSp SINE Alu 3 313 0 1118 206 79 115 chr12 7951172 7951437 -136331052 + MER39 LTR ERV1 1 274 -433 591 194 0 72 chr12 7951437 7951576 -136330913 - FLAM_A SINE Alu 0 133 5 1118 206 79 115 chr12 7951576 7951761 -136330728 + MER39 LTR ERV1 274 464 -243 2313 82 0 0 chr12 7951761 7952064 -136330425 - AluSc SINE Alu -2 307 5 1118 206 79 115 chr12 7952064 7952134 -136330355 + MER39 LTR ERV1 464 688 -19 762 68 0 0 chr12 7952561 7952664 -136329825 - AluSp/q SINE Alu -3 310 208 1288 141 0 134 chr12 7952665 7952767 -136329722 + AluJb SINE Alu 43 157 -155 207 0 0 0 chr12 7952767 7952790 -136329699 + (TA)n Simple_repeat Simple_repeat 2 24 0 1288 141 0 134 chr12 7952790 7952985 -136329504 + AluJb SINE Alu 157 300 -12 22 0 0 0 chr12 7953014 7953036 -136329453 + AT_rich Low_complexity Low_complexity 1 22 0 2119 128 0 0 chr12 7953144 7953442 -136329047 + AluSg SINE Alu 1 298 -12 279 311 113 0 chr12 7953445 7953551 -136328938 + L2 LINE L2 3191 3308 -5 360 160 0 55 chr12 7953678 7953756 -136328733 + AluS SINE Alu 1 57 -251 1605 159 45 3 chr12 7953784 7954073 -136328416 + AluJb SINE Alu 1 301 -11 2212 75 7 3 chr12 7954420 7954725 -136327764 + AluSg SINE Alu 1 306 -4 2369 49 0 33 chr12 7954824 7955129 -136327360 - AluY SINE Alu -14 297 3 1116 165 40 0 chr12 7955135 7955359 -136327130 - L1PA13 LINE L1 0 6163 5931 301 325 0 0 chr12 7955720 7955800 -136326689 + L1ME LINE L1 5740 5819 -302 1680 131 4 0 chr12 7955816 7956075 -136326414 + AluSx SINE Alu 1 260 -52 329 170 0 0 chr12 7956348 7956401 -136326088 + Alu SINE Alu 1 53 -249 2003 113 10 3 chr12 7956419 7956710 -136325779 - AluSc SINE Alu -16 293 1 412 261 153 25 chr12 7956769 7956926 -136325563 + MIR SINE MIR 79 255 -7 2514 37 3 0 chr12 7958168 7958465 -136324024 + AluY SINE Alu 3 300 -11 1028 181 43 0 chr12 7958509 7958719 -136323770 + Charlie4a DNA MER1_type 25 243 -265 822 163 0 0 chr12 7958723 7958864 -136323625 + FLAM_C SINE Alu 3 143 0 692 159 24 111 chr12 7958884 7959022 -136323467 + Charlie4a DNA MER1_type 228 336 -1625 2391 77 0 0 chr12 7959022 7959333 -136323156 + AluY SINE Alu 1 311 0 692 159 24 111 chr12 7959333 7959446 -136323043 + Charlie4a DNA MER1_type 336 457 -51 1972 100 20 20 chr12 7959447 7959747 -136322742 + AluSp SINE Alu 1 300 -13 572 204 14 78 chr12 7959979 7960121 -136322368 - FLAM_A SINE Alu -1 141 9 2032 100 7 3 chr12 7960363 7960654 -136321835 + AluSc SINE Alu 2 293 -16 329 170 0 0 chr12 7960672 7960725 -136321764 - Alu SINE Alu -249 53 1 2117 96 0 35 chr12 7960806 7960975 -136321514 - AluSx SINE Alu -10 302 147 2159 105 3 0 chr12 7960975 7961271 -136321218 - AluSp SINE Alu -15 298 2 2117 96 0 35 chr12 7961271 7961414 -136321075 - AluSx SINE Alu -165 147 1 275 313 62 20 chr12 7961426 7961621 -136320868 - L1ME LINE L1 -304 5817 5615 1570 181 0 0 chr12 7961726 7961992 -136320497 + AluJo SINE Alu 3 268 -44 25 65 0 0 chr12 7962011 7962057 -136320432 + AT_rich Low_complexity Low_complexity 1 46 0 21 71 0 0 chr12 7962143 7962185 -136320304 + AT_rich Low_complexity Low_complexity 1 42 0 1780 116 4 11 chr12 7962232 7962499 -136319990 - AluSp SINE Alu -48 265 1 389 223 0 0 chr12 7962586 7962664 -136319825 - AluJ/FRAM SINE Alu -15 287 216 192 97 0 0 chr12 7962871 7962902 -136319587 + (T)n Simple_repeat Simple_repeat 1 31 0 24 0 0 0 chr12 7963474 7963498 -136318991 + AT_rich Low_complexity Low_complexity 1 24 0 1342 211 16 20 chr12 7963871 7964175 -136318314 - AluSp SINE Alu 0 303 1 1829 150 3 0 chr12 7964191 7964478 -136318011 - AluSq SINE Alu -25 288 1 523 89 13 13 chr12 7964946 7965025 -136317464 + AluY SINE Alu 5 83 -228 1818 96 0 116 chr12 7965165 7965509 -136316980 + AluSx SINE Alu 1 304 -8 417 151 82 0 chr12 7965772 7965845 -136316644 + AluJ/FLAM SINE Alu 2 80 -232 704 154 46 23 chr12 7966007 7966137 -136316352 + AluJo/FLAM SINE Alu 1 133 -169 1687 100 25 0 chr12 7966140 7966381 -136316108 + AluSx SINE Alu 1 247 -65 1776 135 10 0 chr12 7966525 7966813 -136315676 + AluSx SINE Alu 15 305 -7 1198 279 71 16 chr12 7966814 7967284 -136315205 + MLT1D LTR MaLR 8 503 -2 1172 157 4 0 chr12 7967673 7968496 -136313993 - ALR/Alpha Satellite centromeric 0 826 1 1094 162 7 0 chr12 7968509 7969143 -136313346 - ALR/Alpha Satellite centromeric 0 638 1 844 206 0 76 chr12 7969280 7969342 -136313147 + AluJb SINE Alu 89 154 -158 2014 96 39 0 chr12 7969342 7969623 -136312866 + AluSp SINE Alu 7 298 -15 844 206 0 76 chr12 7969623 7969798 -136312691 + AluJb SINE Alu 154 308 -4 2290 65 0 3 chr12 7970059 7970351 -136312138 + AluSc SINE Alu 1 291 -18 1734 50 27 0 chr12 7970430 7970651 -136311838 + L1PA5 LINE L1 5926 6152 -2 1638 168 10 14 chr12 7970667 7970958 -136311531 + AluJo SINE Alu 1 290 -22 367 281 114 52 chr12 7971122 7971332 -136311157 - MIR SINE MIR -37 225 3 888 241 26 44 chr12 7971491 7971719 -136310770 + MER58A DNA MER1_type 1 224 0 1865 152 3 7 chr12 7972219 7972521 -136309968 - AluSx SINE Alu -11 301 1 2140 69 22 4 chr12 7972530 7972843 -136309646 - AluY SINE Alu 0 318 1 26 30 0 0 chr12 7972916 7972949 -136309540 + AT_rich Low_complexity Low_complexity 1 33 0 229 275 38 23 chr12 7973019 7973150 -136309339 - L1MDa LINE L1 -4989 1541 1409 2105 76 0 73 chr12 7973151 7973468 -136309021 - AluSg SINE Alu -16 294 1 325 272 44 20 chr12 7973475 7973594 -136308895 - L1MDa LINE L1 -5135 1408 1285 2241 83 10 0 chr12 7973643 7973945 -136308544 - AluSg SINE Alu -5 305 1 2177 116 0 0 chr12 7973946 7974247 -136308242 - AluSx SINE Alu -9 303 3 1948 136 0 3 chr12 7974250 7974551 -136307938 - AluSx SINE Alu -12 300 1 23 0 0 0 chr12 7974596 7974619 -136307870 + AT_rich Low_complexity Low_complexity 1 23 0 2057 119 10 0 chr12 7974622 7974917 -136307572 + AluSx SINE Alu 1 298 -14 236 273 91 23 chr12 7974940 7975028 -136307461 - L1MDa LINE L1 -5490 1040 947 261 233 105 23 chr12 7975192 7975278 -136307211 + L2 LINE L2 3221 3313 0 952 155 0 0 chr12 7975432 7975587 -136306902 + AluSg/x SINE Alu 156 310 -2 1861 145 0 42 chr12 7975595 7975689 -136306800 + AluSx SINE Alu 1 97 -215 2396 67 0 0 chr12 7975689 7975988 -136306501 + AluY SINE Alu 1 299 -12 1861 145 0 42 chr12 7975988 7976204 -136306285 + AluSx SINE Alu 97 298 -14 522 317 123 18 chr12 7976260 7976487 -136306002 + MIR SINE MIR 12 262 0 21 0 0 0 chr12 7976840 7976861 -136305628 + AT_rich Low_complexity Low_complexity 1 21 0 772 281 7 10 chr12 7976863 7977165 -136305324 + AluY SINE Alu 1 301 0 1085 201 0 0 chr12 7977165 7977379 -136305110 + AluSg/x SINE Alu 83 296 -14 522 317 123 18 chr12 7977435 7977662 -136304827 + MIR SINE MIR 12 262 0 1821 97 48 28 chr12 7977674 7977964 -136304525 - AluY SINE Alu -15 296 1 2217 94 0 7 chr12 7977993 7978302 -136304187 + AluSc SINE Alu 1 307 -2 2061 130 0 0 chr12 7978315 7978616 -136303873 + AluSx SINE Alu 1 301 -11 820 194 0 0 chr12 7978684 7978818 -136303671 - AluSg/x SINE Alu -23 289 156 4228 90 26 5 chr12 7979135 7979703 -136302786 - LTR19B LTR ERV1 0 580 1 2122 114 3 3 chr12 7979987 7980286 -136302203 - AluSx SINE Alu -13 299 1 358 332 20 50 chr12 7980308 7980507 -136301982 - MIR SINE MIR -46 216 24 198 143 0 0 chr12 7981195 7981230 -136301259 + (TTCA)n Simple_repeat Simple_repeat 3 37 0 200 264 0 19 chr12 7981231 7981284 -136301205 - L2 LINE L2 0 3313 3262 2355 58 0 19 chr12 7981332 7981642 -136300847 - AluY SINE Alu -7 304 1 1969 151 12 82 chr12 7981683 7981862 -136300627 + MLT1B LTR MaLR 1 191 -199 1587 160 26 49 chr12 7981862 7981999 -136300490 + AluJo SINE Alu 12 151 -161 2298 80 7 3 chr12 7981999 7982301 -136300188 + AluSq SINE Alu 1 303 -10 1587 160 26 49 chr12 7982301 7982469 -136300020 + AluJo SINE Alu 151 310 -2 1969 151 12 82 chr12 7982469 7982705 -136299784 + MLT1B LTR MaLR 191 387 -3 2099 85 0 50 chr12 7983008 7983325 -136299164 - AluSg1 SINE Alu -8 301 1 2098 113 3 7 chr12 7983673 7983975 -136298514 + AluSq SINE Alu 1 301 -12 301 224 112 65 chr12 7984077 7984184 -136298305 + MER5B DNA MER1_type 2 113 -65 2271 198 40 28 chr12 7984287 7984348 -136298141 - MLT1D LTR MaLR -3 502 443 1222 169 177 0 chr12 7984348 7984597 -136297892 - AluSx SINE Alu -9 293 1 2271 198 40 28 chr12 7984597 7985031 -136297458 - MLT1D LTR MaLR -62 443 1 1858 150 0 0 chr12 7985036 7985322 -136297167 - AluSx SINE Alu -13 299 14 1646 178 0 7 chr12 7985658 7985956 -136296533 + AluJo SINE Alu 1 296 -16 2164 93 3 16 chr12 7986997 7987307 -136295182 - AluSq SINE Alu -7 306 1 2289 94 0 0 chr12 7987367 7987665 -136294824 - AluSx SINE Alu -14 298 1 292 165 0 0 chr12 7987783 7987834 -136294655 - AluJo SINE Alu -7 295 251 1098 171 0 5 chr12 7987836 7988023 -136294466 - AluJo SINE Alu -126 186 1 942 163 12 12 chr12 7988025 7988197 -136294292 - FAM SINE Alu -3 172 1 23 0 0 0 chr12 7988198 7988221 -136294268 + AT_rich Low_complexity Low_complexity 1 23 0 1085 180 48 89 chr12 7988226 7988345 -136294144 + L1M4 LINE L1 4683 4805 -1341 2045 119 3 0 chr12 7988345 7988648 -136293841 + AluSx SINE Alu 1 304 -8 1085 180 48 89 chr12 7988648 7988749 -136293740 + L1M4 LINE L1 4805 4889 -1257 206 32 32 0 chr12 7988749 7988780 -136293709 + (TTTA)n Simple_repeat Simple_repeat 1 32 0 1085 180 48 89 chr12 7988780 7988874 -136293615 + L1M4 LINE L1 4889 4985 -1161 1993 99 0 34 chr12 7989101 7989421 -136293068 + AluSq SINE Alu 1 310 0 209 236 36 0 chr12 7989451 7989506 -136292983 + CT-rich Low_complexity Low_complexity 2 58 0 772 209 7 7 chr12 7989528 7989676 -136292813 - AluJo SINE Alu -163 149 2 525 253 104 12 chr12 7989680 7989929 -136292560 + L1MC4 LINE L1 7768 8039 -3 1104 172 18 9 chr12 7989986 7990207 -136292282 + AluJb SINE Alu 87 309 -3 947 146 0 62 chr12 7990306 7990484 -136292005 + AluSp SINE Alu 137 303 -10 573 221 159 12 chr12 7990501 7990679 -136291810 + MIR SINE MIR 49 251 -11 2090 111 0 0 chr12 7990786 7991075 -136291414 + AluSx SINE Alu 1 289 -23 2023 121 23 3 chr12 7991252 7991558 -136290931 + AluSq SINE Alu 2 313 0 365 118 0 2 chr12 7991655 7991721 -136290768 + Alu SINE Alu 244 299 -3 3656 182 92 26 chr12 7991793 7992501 -136289988 + MER21B LTR ERV1 1 762 -101 2102 121 7 0 chr12 7992501 7992807 -136289682 + AluSq SINE Alu 1 308 -5 3656 182 92 26 chr12 7992807 7992840 -136289649 + MER21B LTR ERV1 762 791 -72 651 192 233 0 chr12 7994050 7994222 -136288267 + L1MC1 LINE L1 6110 6321 -12 192 125 0 0 chr12 7994363 7994395 -136288094 + (A)n Simple_repeat Simple_repeat 1 32 0 1426 136 14 85 chr12 7994536 7994831 -136287658 - AluJb SINE Alu -24 288 15 1954 113 0 7 chr12 7994839 7995131 -136287358 - AluSq SINE Alu -23 290 1 2375 68 0 3 chr12 7995632 7995941 -136286548 + AluY SINE Alu 1 308 -3 1221 77 6 22 chr12 7995947 7996128 -136286361 + AluSq SINE Alu 120 297 -16 648 239 176 10 chr12 7996172 7996377 -136286112 - MER8 DNA MER2_type 0 239 1 1594 44 0 10 chr12 7996414 7996618 -136285871 - AluY SINE Alu -28 283 82 924 130 7 0 chr12 7996627 7996773 -136285716 - AluJb SINE Alu -24 288 142 539 178 110 0 chr12 7997774 7997892 -136284597 + FLAM_A SINE Alu 2 132 -1 2094 84 17 3 chr12 7997900 7998197 -136284292 + AluSg SINE Alu 1 301 -9 2394 64 0 0 chr12 7998431 7998742 -136283747 + AluY SINE Alu 1 311 0 261 0 0 0 chr12 7998896 7998925 -136283564 + (A)n Simple_repeat Simple_repeat 1 29 0 234 62 0 0 chr12 7999469 7999501 -136282988 + (T)n Simple_repeat Simple_repeat 1 32 0 609 118 0 64 chr12 8000163 8000273 -136282216 + FRAM SINE Alu 56 158 -18 392 217 123 9 chr12 8000290 8000396 -136282093 + MER5A DNA MER1_type 45 162 -27 188 167 0 0 chr12 8000423 8000453 -136282036 + MER5A DNA MER1_type 148 177 -12 1968 136 0 37 chr12 8000663 8000799 -136281690 + AluSx SINE Alu 1 141 -171 2111 109 0 0 chr12 8000799 8001093 -136281396 + AluY SINE Alu 1 294 -17 1968 136 0 37 chr12 8001093 8001279 -136281210 + AluSx SINE Alu 141 311 -1 337 296 58 108 chr12 8001291 8001432 -136281057 + HAL1 LINE L1 2188 2335 -172 2078 132 0 3 chr12 8001432 8001742 -136280747 + AluSq SINE Alu 1 309 -4 337 296 58 108 chr12 8001742 8001765 -136280724 + HAL1 LINE L1 2335 2358 -149 1884 133 36 7 chr12 8001765 8002067 -136280422 + AluSx SINE Alu 1 311 -1 337 296 58 108 chr12 8002067 8002141 -136280348 + HAL1 LINE L1 2358 2415 -92 1811 137 37 0 chr12 8002265 8002564 -136279925 + AluSg SINE Alu 1 310 0 1192 149 0 5 chr12 8002815 8003009 -136279480 + AluJo SINE Alu 1 193 -119 1567 90 24 0 chr12 8003016 8003228 -136279261 - AluSx SINE Alu -95 217 1 417 165 13 0 chr12 8003228 8003307 -136279182 - MER39 LTR ERV1 -45 662 583 1410 159 14 41 chr12 8003307 8003602 -136278887 + AluJo SINE Alu 1 287 -25 219 139 0 0 chr12 8003660 8003696 -136278793 + (TG)n Simple_repeat Simple_repeat 1 36 0 2446 62 3 0 chr12 8003772 8004079 -136278410 - AluSp SINE Alu -5 308 1 2306 73 3 3 chr12 8004100 8004413 -136278076 - AluSp SINE Alu 0 313 1 2174 94 3 0 chr12 8005172 8005471 -136277018 - AluSx SINE Alu -11 301 2 632 134 10 0 chr12 8005472 8005569 -136276920 + L1MC3 LINE L1 6718 6815 -970 464 125 0 0 chr12 8005581 8005645 -136276844 + AluJ/FLAM SINE Alu 3 66 -246 323 224 30 0 chr12 8005645 8005712 -136276777 - LTR9B LTR ERV1 0 644 576 1752 169 7 0 chr12 8005713 8006015 -136276474 + AluSg SINE Alu 1 304 -6 834 152 103 0 chr12 8006028 8006193 -136276296 + L1MC3 LINE L1 6887 7068 -717 885 198 0 0 chr12 8006202 8006384 -136276105 - AluJo SINE Alu -12 300 119 372 153 133 102 chr12 8006411 8006509 -136275980 + L1MC3 LINE L1 7070 7170 -615 1754 216 39 44 chr12 8006598 8007009 -136275480 + LTR2 LTR ERV1 41 449 0 2188 114 7 0 chr12 8007028 8007336 -136275153 + AluSg SINE Alu 1 310 0 1781 123 88 0 chr12 8007368 8007653 -136274836 + AluSx SINE Alu 1 310 -2 244 150 0 25 chr12 8007672 8007712 -136274777 - Alu SINE Alu -261 39 1 1849 111 13 30 chr12 8007764 8008062 -136274427 + AluSg SINE Alu 1 293 -17 37 52 0 0 chr12 8008062 8008120 -136274369 + AT_rich Low_complexity Low_complexity 1 58 0 1303 193 20 20 chr12 8008193 8008493 -136273996 + AluSp SINE Alu 1 300 -13 2137 95 20 0 chr12 8008552 8008846 -136273643 - AluSx SINE Alu -12 300 1 704 154 46 23 chr12 8008849 8008979 -136273510 - AluJo/FLAM SINE Alu -169 133 1 1881 91 0 114 chr12 8009241 8009582 -136272907 - AluSg SINE Alu -8 302 1 1565 155 25 41 chr12 8009707 8010024 -136272465 + AluJb SINE Alu 1 312 0 285 299 180 50 chr12 8010044 8010323 -136272166 - L2 LINE L2 -311 3002 2687 2025 90 16 39 chr12 8010323 8010634 -136271855 + AluSx SINE Alu 1 304 -8 258 347 0 0 chr12 8010648 8010720 -136271769 + L2 LINE L2 3242 3313 0 303 210 86 12 chr12 8010771 8010852 -136271637 + MER5A DNA MER1_type 35 121 -68 454 258 39 79 chr12 8011237 8011415 -136271074 + MIR SINE MIR 53 223 -39 420 253 0 0 chr12 8012049 8012132 -136270357 - L2 LINE L2 0 3272 3190 1588 113 36 0 chr12 8012165 8012387 -136270102 - MER30 DNA MER1_type 0 230 1 1770 165 0 13 chr12 8012429 8012745 -136269744 - AluJo SINE Alu 0 312 1 2305 88 3 0 chr12 8012951 8013257 -136269232 - AluSp SINE Alu -6 307 1 277 356 0 0 chr12 8013363 8013453 -136269036 + L2 LINE L2 3183 3272 0 675 154 14 77 chr12 8013516 8013659 -136268830 - FLAM_A SINE Alu -1 141 8 435 313 126 47 chr12 8013795 8013900 -136268589 + MIR SINE MIR 32 127 -135 2312 39 7 4 chr12 8013900 8014203 -136268286 + AluY SINE Alu 2 305 0 435 313 126 47 chr12 8014203 8014310 -136268179 + MIR SINE MIR 127 262 0 673 233 0 0 chr12 8014347 8014476 -136268013 + FLAM_A SINE Alu 3 131 -2 270 81 0 0 chr12 8014496 8014533 -136267956 + (A)n Simple_repeat Simple_repeat 1 37 0 203 294 39 78 chr12 8014589 8014668 -136267821 + MIR3 SINE MIR 8 85 -123 2142 88 3 0 chr12 8014668 8014982 -136267507 + AluSq SINE Alu 1 315 0 203 294 39 78 chr12 8014982 8015003 -136267486 + MIR3 SINE MIR 85 105 -103 2119 110 0 25 chr12 8015160 8015477 -136267012 + AluSx SINE Alu 1 309 -3 1837 116 4 0 chr12 8015554 8015812 -136266677 + AluSx SINE Alu 53 311 -1 345 307 80 22 chr12 8015823 8015960 -136266529 + MIR SINE MIR 2 146 -116 1175 108 18 0 chr12 8015961 8016127 -136266362 + L1PA12 LINE L1 5993 6161 -7 2436 44 0 16 chr12 8016127 8016442 -136266047 + AluY SINE Alu 1 310 -1 1924 136 0 13 chr12 8016453 8016761 -136265728 + AluSx SINE Alu 1 304 -8 555 273 73 14 chr12 8016825 8017045 -136265444 + L1ME LINE L1 5378 5610 -511 842 171 8 139 chr12 8017048 8017293 -136265196 + AluJo SINE Alu 2 214 -98 831 120 0 8 chr12 8017341 8017474 -136265015 + FLAM_C SINE Alu 2 133 0 2127 116 0 0 chr12 8017769 8018070 -136264419 + AluSx SINE Alu 1 301 -11 1831 120 39 3 chr12 8018288 8018405 -136264084 + AluSc SINE Alu 3 114 -195 272 27 27 0 chr12 8018405 8018442 -136264047 + (TAAAA)n Simple_repeat Simple_repeat 2 39 0 1831 120 39 3 chr12 8018442 8018607 -136263882 + AluSc SINE Alu 114 295 -14 2509 53 0 0 chr12 8019367 8019670 -136262819 - AluY SINE Alu -6 305 3 1001 130 0 0 chr12 8019992 8020130 -136262359 + AluSq/x SINE Alu 1 138 -174 1978 117 4 0 chr12 8020146 8020427 -136262062 + AluSx SINE Alu 21 302 -10 2184 110 0 17 chr12 8020834 8020969 -136261520 + AluSg SINE Alu 1 137 -173 2089 129 3 7 chr12 8020969 8021263 -136261226 + AluSg SINE Alu 1 293 -17 2184 110 0 17 chr12 8021263 8021428 -136261061 + AluSg SINE Alu 137 296 -14 1833 111 0 64 chr12 8021429 8021574 -136260915 + AluY SINE Alu 1 154 -157 2585 61 0 3 chr12 8021574 8021885 -136260604 + AluY SINE Alu 1 310 -1 2325 99 0 10 chr12 8021886 8022198 -136260291 + AluY SINE Alu 3 311 0 1833 111 0 64 chr12 8022198 8022347 -136260142 + AluY SINE Alu 153 278 -33 494 92 0 0 chr12 8022379 8022444 -136260045 - AluJ/FLAM SINE Alu -247 65 1 2493 86 0 0 chr12 8022703 8023004 -136259485 + AluY SINE Alu 1 301 -10 315 267 38 86 chr12 8023054 8023228 -136259261 - MIR SINE MIR -14 194 32 288 0 0 0 chr12 8023463 8023495 -136258994 + (TG)n Simple_repeat Simple_repeat 1 32 0 2068 128 3 22 chr12 8023557 8023870 -136258619 + AluSq SINE Alu 1 307 -6 273 290 0 0 chr12 8023875 8023944 -136258545 - MIR SINE MIR -74 188 120 343 25 0 0 chr12 8023945 8023985 -136258504 - tRNA-Thr-ACA tRNA tRNA -36 40 1 228 239 69 28 chr12 8023991 8024084 -136258405 - MIR SINE MIR -80 128 32 2302 84 7 23 chr12 8024290 8024599 -136257890 + AluSx SINE Alu 1 304 -8 626 228 16 0 chr12 8024911 8025038 -136257451 - MER5A DNA MER1_type 0 189 61 1631 143 3 14 chr12 8025039 8025326 -136257163 - MER39 LTR ERV1 0 707 424 2250 56 66 3 chr12 8025327 8025613 -136256876 - AluSg SINE Alu -6 304 1 2144 106 3 0 chr12 8025726 8026037 -136256452 - AluSq SINE Alu 0 312 1 225 0 0 0 chr12 8026131 8026156 -136256333 + (A)n Simple_repeat Simple_repeat 1 25 0 180 111 0 0 chr12 8026154 8026181 -136256308 + (GGAA)n Simple_repeat Simple_repeat 3 29 0 * 335 303 51 17 chr12 8026422 8026597 -136255892 + L1ME4a LINE L1 5940 6120 -1 1563 160 3 95 chr12 8026599 8026771 -136255718 - AluJo SINE Alu -4 308 122 216 0 0 0 chr12 8026771 8026795 -136255694 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 1835 130 0 11 chr12 8026795 8027056 -136255433 - AluSp SINE Alu -21 292 35 1563 160 3 95 chr12 8027056 8027219 -136255270 - AluJo SINE Alu -188 124 3 697 49 0 0 chr12 8027251 8027333 -136255156 - AluS SINE Alu -230 83 2 2158 122 6 35 chr12 8027338 8027657 -136254832 - AluSx SINE Alu -2 310 1 1611 148 15 77 chr12 8027771 8027913 -136254576 + AluSx SINE Alu 1 150 -162 2394 93 0 3 chr12 8027913 8028223 -136254266 + AluSg SINE Alu 1 309 -1 1611 148 15 77 chr12 8028223 8028404 -136254085 + AluSx SINE Alu 150 304 -8 2035 132 0 0 chr12 8028405 8028685 -136253804 + AluSx SINE Alu 1 280 -32 282 29 0 0 chr12 8028686 8028721 -136253768 + (TAAA)n Simple_repeat Simple_repeat 1 35 0 1883 178 0 0 chr12 8028763 8029066 -136253423 + AluJb SINE Alu 1 303 -9 1750 53 31 13 chr12 8029564 8029790 -136252699 - AluY SINE Alu -81 230 1 2049 171 9 11 chr12 8029813 8030167 -136252322 + MLT1A1 LTR MaLR 1 437 -20 2195 114 0 3 chr12 8030167 8030466 -136252023 + AluSx SINE Alu 1 298 -14 2049 171 9 11 chr12 8030466 8030487 -136252002 + MLT1A1 LTR MaLR 437 457 0 23 0 0 0 chr12 8030570 8030593 -136251896 + AT_rich Low_complexity Low_complexity 1 23 0 28 0 0 0 chr12 8030625 8030653 -136251836 + AT_rich Low_complexity Low_complexity 1 28 0 368 117 67 0 chr12 8030833 8030893 -136251596 - AluSx SINE Alu -4 296 233 4344 139 122 34 chr12 8030893 8032144 -136250345 + pTR5 LTR ERV1 290 2295 -143 1635 155 4 0 chr12 8032144 8032383 -136250106 - AluSx SINE Alu -72 240 1 1331 211 106 7 chr12 8032483 8032662 -136249827 - AluJo SINE Alu 0 312 93 213 65 0 0 chr12 8032662 8032693 -136249796 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 1331 211 106 7 chr12 8032693 8032797 -136249692 - AluJo SINE Alu -219 93 1 361 269 92 15 chr12 8033059 8033189 -136249300 + MLT1H LTR MaLR 409 548 -1 1725 191 0 17 chr12 8033237 8033536 -136248953 + AluJo SINE Alu 1 294 -18 2121 121 3 13 chr12 8033537 8033835 -136248654 + AluSp SINE Alu 1 295 -18 1272 209 51 32 chr12 8033904 8033939 -136248550 + LTR53 LTR ERVL 189 222 -297 2028 172 0 3 chr12 8033939 8034247 -136248242 - AluSx SINE Alu -5 307 1 1272 209 51 32 chr12 8034247 8034522 -136247967 + LTR53 LTR ERVL 222 505 -14 2419 79 0 3 chr12 8034981 8035273 -136247216 - AluSc SINE Alu -18 291 1 244 137 0 39 chr12 8035459 8035508 -136246981 + Alu SINE Alu 1 47 -86 485 116 0 0 chr12 8035508 8035577 -136246912 - THE1C LTR MaLR 0 375 307 449 63 0 0 chr12 8035578 8035641 -136246848 - AluSp/q SINE Alu -11 302 240 1811 119 0 0 chr12 8035643 8035886 -136246603 + AluSg/x SINE Alu 67 309 -3 2504 72 7 0 chr12 8036396 8036702 -136245787 + AluSp SINE Alu 1 308 -5 451 236 11 0 chr12 8036732 8036821 -136245668 + FRAM/FAM SINE Alu 1 84 -92 2641 55 3 0 chr12 8037276 8037586 -136244903 - AluY SINE Alu 0 311 1 1462 225 32 42 chr12 8037743 8037787 -136244702 - MLT1A2 LTR MaLR 0 374 331 2456 101 0 0 chr12 8037787 8038095 -136244394 + AluSx SINE Alu 1 308 -4 1462 225 32 42 chr12 8038095 8038428 -136244061 - MLT1A2 LTR MaLR -43 331 1 1954 125 34 3 chr12 8038612 8038907 -136243582 + AluJo SINE Alu 1 304 -8 2126 150 52 86 chr12 8039284 8039725 -136242764 + MSTB LTR MaLR 1 426 0 2119 46 102 25 chr12 8039858 8040143 -136242346 + AluY SINE Alu 1 307 -4 364 201 84 123 chr12 8040374 8040553 -136241936 - L2 LINE L2 -10 3303 3132 2177 100 4 7 chr12 8040662 8040990 -136241499 - AluSg SINE Alu 0 329 3 2282 114 7 0 chr12 8040992 8041289 -136241200 - AluSx SINE Alu -13 299 1 1986 141 0 36 chr12 8041303 8041489 -136241000 - AluSq SINE Alu 0 313 148 2094 103 39 3 chr12 8041489 8041771 -136240718 - AluSx SINE Alu -20 292 1 1986 141 0 36 chr12 8041771 8041914 -136240575 - AluSq SINE Alu -165 148 1 207 247 65 32 chr12 8042161 8042254 -136240235 + L2 LINE L2 2239 2334 -980 693 174 0 43 chr12 8042254 8042392 -136240097 + AluJo/FLAM SINE Alu 1 132 -170 1315 62 80 0 chr12 8042394 8042570 -136239919 + AluY SINE Alu 3 192 -119 2118 117 53 91 chr12 8042687 8042847 -136239642 - Tigger1 DNA MER2_type -1983 435 271 2433 87 0 6 chr12 8042847 8043158 -136239331 - AluSc SINE Alu 0 309 1 2118 117 53 91 chr12 8043158 8043449 -136239040 - Tigger1 DNA MER2_type -2147 271 1 541 252 38 0 chr12 8043449 8043580 -136238909 - L2 LINE L2 -251 3062 2927 433 224 116 48 chr12 8043608 8043755 -136238734 - MER58B DNA MER1_type -3 338 182 2214 85 4 0 chr12 8043776 8044080 -136238409 + AluY SINE Alu 1 305 0 754 227 26 5 chr12 8044082 8044276 -136238213 + L1M4 LINE L1 5100 5297 -849 2158 117 7 3 chr12 8044298 8044607 -136237882 + AluY SINE Alu 1 310 -1 1356 135 34 10 chr12 8044774 8044981 -136237508 - AluSg/x SINE Alu -10 302 91 3821 170 72 51 chr12 8044981 8045786 -136236703 - LTR12 LTR ERV1 0 826 5 1149 167 27 12 chr12 8045801 8046059 -136236430 - pTR5 LTR ERV1 -1093 1345 1084 307 146 0 0 chr12 8046059 8046107 -136236382 - Alu SINE Alu -243 56 9 2291 106 0 3 chr12 8046122 8046424 -136236065 - AluSg SINE Alu -3 307 7 2192 118 3 0 chr12 8046429 8046733 -136235756 - AluSx SINE Alu -7 305 1 313 300 190 0 chr12 8046828 8046928 -136235561 + MER91A DNA MER1_type 58 176 -20 287 286 57 0 chr12 8046939 8047009 -136235480 + MER91A DNA MER1_type 123 196 0 402 183 43 35 chr12 8047036 8047151 -136235338 + Charlie2 DNA MER1_type 2726 2841 -21 2374 94 3 0 chr12 8047323 8047620 -136234869 + AluSp SINE Alu 2 299 -14 199 374 65 0 chr12 8048438 8048561 -136233928 + L2 LINE L2 2949 3079 -193 783 289 60 13 chr12 8048691 8048989 -136233500 + L2 LINE L2 575 886 -2428 2188 125 0 13 chr12 8048994 8049307 -136233182 - AluSx SINE Alu -3 309 1 1865 193 52 18 chr12 8049307 8049615 -136232874 + L1M4 LINE L1 4845 5176 -970 2378 107 3 0 chr12 8049615 8049924 -136232565 + AluSp SINE Alu 1 310 -3 1865 193 52 18 chr12 8049924 8050072 -136232417 + L1M4 LINE L1 5176 5317 -829 511 309 65 13 chr12 8050076 8050261 -136232228 - L2 LINE L2 -1317 1997 1796 1591 151 4 39 chr12 8050261 8050540 -136231949 - AluSx SINE Alu -11 301 33 511 309 65 13 chr12 8050540 8050584 -136231905 - L2 LINE L2 -1518 1796 1756 799 163 16 0 chr12 8050589 8050718 -136231771 + FLAM_A SINE Alu 1 131 -2 2168 133 3 0 chr12 8050807 8051107 -136231382 - AluSq SINE Alu -12 301 1 2330 85 0 3 chr12 8051129 8051444 -136231045 - AluSc SINE Alu 0 314 1 400 93 0 0 chr12 8051520 8051574 -136230915 + Alu SINE Alu 243 296 -14 581 284 18 30 chr12 8051574 8051743 -136230746 - MER5A DNA MER1_type -16 173 7 467 251 27 53 chr12 8051831 8051938 -136230551 - Charlie2 DNA MER1_type -2602 260 159 1536 171 36 39 chr12 8051938 8052243 -136230246 - 7SLRNA srpRNA srpRNA -15 305 2 467 251 27 53 chr12 8052243 8052322 -136230167 - Charlie2 DNA MER1_type -2703 159 79 26 45 0 45 chr12 8052366 8052432 -136230057 + AT_rich Low_complexity Low_complexity 1 63 0 2302 108 3 0 chr12 8052479 8052786 -136229703 + AluSg SINE Alu 1 308 -2 870 138 0 15 chr12 8052974 8053104 -136229385 + FLAM_C SINE Alu 2 129 -4 2320 102 3 0 chr12 8053306 8053610 -136228879 + AluSg SINE Alu 1 305 -5 2025 99 3 87 chr12 8053615 8053937 -136228552 + AluSp SINE Alu 19 313 0 909 324 35 19 chr12 8053940 8054314 -136228175 - L2 LINE L2 -660 2654 2275 238 121 0 0 chr12 8054315 8054348 -136228141 + U2 snRNA snRNA 1 33 -155 556 273 120 34 chr12 8054394 8054661 -136227828 - L3 LINE CR1 -145 1432 1143 1185 130 12 0 chr12 8054792 8054961 -136227528 - AluSg/x SINE Alu -8 302 132 2257 105 31 0 chr12 8054961 8055255 -136227234 - AluSg SINE Alu -7 303 1 321 241 38 0 chr12 8055585 8055664 -136226825 - L3 LINE CR1 -1081 496 415 916 228 25 0 chr12 8055664 8055861 -136226628 + MER20 DNA MER1_type 1 202 -17 677 121 0 0 chr12 8057596 8057695 -136224794 + HY3 scRNA scRNA 2 100 -1 25 0 0 0 chr12 8057695 8057720 -136224769 + AT_rich Low_complexity Low_complexity 1 25 0 2397 86 0 3 chr12 8057720 8058024 -136224465 + AluSc SINE Alu 1 303 -6 2211 100 0 19 chr12 8058486 8058795 -136223694 - AluSg SINE Alu -7 303 1 1842 162 0 4 chr12 8058918 8059189 -136223300 - AluJb SINE Alu -38 274 5 2019 116 10 3 chr12 8059262 8059556 -136222933 + AluSx SINE Alu 4 299 -13 2513 70 0 3 chr12 8059558 8059857 -136222632 + AluSq SINE Alu 1 298 -15 22 0 0 0 chr12 8060018 8060040 -136222449 + AT_rich Low_complexity Low_complexity 1 22 0 508 151 75 0 chr12 8061033 8061126 -136221363 - HY3 scRNA scRNA -1 100 1 2254 106 3 0 chr12 8061135 8061443 -136221046 - AluSp SINE Alu 0 309 1 395 192 0 0 chr12 8061445 8061518 -136220971 - MER5A DNA MER1_type -115 74 2 281 113 113 19 chr12 8061729 8061782 -136220707 + MER81 DNA DNA 36 93 -21 501 176 0 44 chr12 8062080 8062171 -136220318 - AluJ/FLAM SINE Alu -224 88 2 2294 101 0 3 chr12 8062200 8062496 -136219993 + AluSg SINE Alu 1 295 -15 257 143 0 0 chr12 8062497 8062539 -136219950 + Charlie5 DNA MER1_type 2544 2585 -27 180 0 0 0 chr12 8063318 8063338 -136219151 + (TTTG)n Simple_repeat Simple_repeat 1 20 0 1410 112 11 0 chr12 8063342 8063530 -136218959 - AluSg/x SINE Alu -37 275 86 1475 127 53 133 chr12 8063989 8064311 -136218178 - AluJo SINE Alu -14 298 3 614 179 17 8 chr12 8064370 8064487 -136218002 + FLAM_C SINE Alu 26 143 0 2263 77 0 48 chr12 8064923 8065235 -136217254 - AluSx SINE Alu -15 297 1 591 188 0 0 chr12 8066080 8066181 -136216308 + FLAM_A SINE Alu 1 101 -41 2315 102 3 0 chr12 8066587 8066892 -136215597 - AluSx SINE Alu -5 307 2 2344 111 0 0 chr12 8067580 8067878 -136214611 - AluSq SINE Alu -15 298 1 928 184 0 0 chr12 8068084 8068231 -136214258 - AluJb SINE Alu -30 282 136 2317 107 0 3 chr12 8068269 8068579 -136213910 + AluSg1 SINE Alu 1 309 0 203 213 43 0 chr12 8069000 8069047 -136213442 + MIR SINE MIR 183 231 -31 2258 106 20 0 chr12 8069139 8069440 -136213049 - AluSx SINE Alu -4 308 2 2209 100 28 0 chr12 8069488 8069779 -136212710 - AluSg1 SINE Alu -10 299 1 1120 120 0 6 chr12 8070153 8070311 -136212178 - AluSx SINE Alu -12 298 142 2291 98 3 13 chr12 8070332 8070638 -136211851 - AluSg SINE Alu -7 303 1 474 31 0 0 chr12 8070661 8070726 -136211763 - MER41A LTR ERV1 -88 466 402 937 111 37 0 chr12 8070726 8070861 -136211628 - AluSx SINE Alu -173 140 1 1287 97 11 27 chr12 8071272 8071457 -136211032 + AluSg/x SINE Alu 128 309 -1 551 263 99 7 chr12 8071460 8071612 -136210877 + AluJo/FRAM SINE Alu 137 302 0 957 102 0 38 chr12 8071613 8071716 -136210773 + (GAAA)n Simple_repeat Simple_repeat 1 278 0 957 102 0 38 chr12 8071716 8071902 -136210587 + (GAAA)n Simple_repeat Simple_repeat 2 180 0 623 133 62 47 chr12 8072366 8072494 -136209995 + FLAM_A SINE Alu 1 130 -3 2082 118 3 10 chr12 8072925 8073238 -136209251 - AluY SINE Alu 0 311 1 2061 121 3 0 chr12 8073243 8073541 -136208948 - AluSx SINE Alu -13 299 1 1082 107 0 0 chr12 8073725 8073875 -136208614 + AluSq/x SINE Alu 1 150 -162 195 42 0 0 chr12 8073889 8073913 -136208576 + (CAAT)n Simple_repeat Simple_repeat 2 25 0 2039 114 17 0 chr12 8073970 8074268 -136208221 - AluSx SINE Alu -9 303 1 1974 121 0 0 chr12 8074444 8074746 -136207743 - AluSx SINE Alu 0 302 1 2126 91 10 0 chr12 8074981 8075279 -136207210 - AluSp SINE Alu -12 301 1 2083 128 0 0 chr12 8075315 8075619 -136206870 - AluSx SINE Alu -8 304 1 25 0 0 0 chr12 8075665 8075690 -136206799 + AT_rich Low_complexity Low_complexity 1 25 0 650 185 0 52 chr12 8075876 8076011 -136206478 + FLAM_A SINE Alu 1 128 -5 2306 60 7 13 chr12 8076031 8076332 -136206157 - AluY SINE Alu -10 301 3 776 180 60 80 chr12 8076478 8076678 -136205811 - MER21A LTR ERV1 0 931 736 483 124 0 56 chr12 8076868 8076957 -136205532 + AluS SINE Alu 222 305 -4 2479 62 0 0 chr12 8077155 8077459 -136205030 + AluY SINE Alu 1 304 -7 1074 277 89 53 chr12 8077469 8078054 -136204435 - L2 LINE L2 -771 2543 1938 1647 158 0 7 chr12 8078055 8078376 -136204113 + AluSx SINE Alu 1 319 0 513 171 48 9 chr12 8078438 8078543 -136203946 - AluSx SINE Alu -4 308 200 966 129 0 7 chr12 8078547 8078694 -136203795 - AluSx SINE Alu -166 146 1 2119 129 0 0 chr12 8078695 8079006 -136203483 - AluSx SINE Alu 0 312 2 393 254 42 117 chr12 8079020 8079260 -136203229 - L2 LINE L2 -1395 1919 1698 523 159 11 11 chr12 8079284 8079372 -136203117 + AluS SINE Alu 2 89 -224 789 212 18 0 chr12 8079441 8079606 -136202883 - L1MB7 LINE L1 -146 6038 5871 700 146 0 32 chr12 8079615 8079738 -136202751 - AluJ SINE Alu -3 309 191 893 146 0 0 chr12 8079742 8079879 -136202610 - AluJ SINE Alu -175 137 1 535 159 37 0 chr12 8079881 8079988 -136202501 - L1MB7 LINE L1 -306 5878 5768 241 114 136 0 chr12 8079995 8080039 -136202450 - L1MB7 LINE L1 -553 5631 5582 * 975 222 36 14 chr12 8080018 8080293 -136202196 - L1M4 LINE L1 -2210 3936 3656 390 125 31 0 chr12 8080294 8080358 -136202131 + MLT2C1 LTR ERVL 1 66 -331 2162 80 0 46 chr12 8080373 8080698 -136201791 - AluY SINE Alu -1 310 1 431 89 0 0 chr12 8080704 8080760 -136201729 - AluSp SINE Alu -17 293 238 260 111 37 74 chr12 8080763 8080817 -136201672 - AluSp SINE Alu -133 170 119 * 368 211 138 0 chr12 8080799 8080908 -136201581 + MLT2C1 LTR ERVL 74 197 -200 1103 148 0 0 chr12 8081014 8081190 -136201299 - AluSg/x SINE Alu 0 310 135 2144 101 3 0 chr12 8081193 8081481 -136201008 - AluSx SINE Alu -15 297 9 1544 95 0 5 chr12 8081481 8081692 -136200797 - AluSc SINE Alu -99 210 1 328 294 14 28 chr12 8081906 8082049 -136200440 + GA-rich Low_complexity Low_complexity 4 144 0 2301 68 3 0 chr12 8082484 8082776 -136199713 - AluSp SINE Alu -18 295 3 2327 43 3 0 chr12 8083080 8083385 -136199104 - AluY SINE Alu 0 306 1 23 78 0 0 chr12 8083422 8083473 -136199016 + AT_rich Low_complexity Low_complexity 1 51 0 2148 113 0 0 chr12 8083485 8083785 -136198704 - AluSx SINE Alu -10 302 3 456 252 9 9 chr12 8083852 8083963 -136198526 - MER70B LTR ERVL -11 567 457 2158 80 10 3 chr12 8084154 8084443 -136198046 - AluY SINE Alu -20 291 1 1898 145 20 0 chr12 8084443 8084740 -136197749 - AluSx SINE Alu -5 307 5 786 187 0 8 chr12 8084988 8085122 -136197367 - FLAM_A SINE Alu 0 133 1 1921 100 6 85 chr12 8085286 8085616 -136196873 + AluSq SINE Alu 1 304 -9 703 172 15 22 chr12 8085638 8085772 -136196717 - FLAM_C SINE Alu -4 139 7 300 291 13 76 chr12 8085819 8085977 -136196512 + L1ME4a LINE L1 5974 6121 0 2118 131 0 0 chr12 8085986 8086299 -136196190 + AluSq SINE Alu 1 313 0 957 168 11 173 chr12 8086468 8086687 -136195802 - AluSc SINE Alu -9 300 160 2304 75 3 0 chr12 8086687 8086981 -136195508 - AluSp SINE Alu -16 297 3 957 168 11 173 chr12 8086981 8087119 -136195370 - AluSc SINE Alu -149 160 1 1125 333 42 15 chr12 8087186 8087744 -136194745 + L2 LINE L2 2739 3309 -4 2016 125 0 7 chr12 8087762 8088066 -136194423 + AluSx SINE Alu 1 302 -10 21 0 0 0 chr12 8088068 8088089 -136194400 + AT_rich Low_complexity Low_complexity 1 21 0 1652 124 4 4 chr12 8088138 8088388 -136194101 - AluSp SINE Alu -15 298 49 1004 92 0 0 chr12 8088395 8088525 -136193964 - AluSq/x SINE Alu -183 130 1 2141 104 0 0 chr12 8089102 8089400 -136193089 - AluSp SINE Alu -15 298 1 611 129 95 17 chr12 8089401 8089517 -136192972 - L1MC2 LINE L1 -517 5827 5703 1888 115 7 0 chr12 8089519 8089807 -136192682 + AluSx SINE Alu 1 290 -22 967 206 122 5 chr12 8089810 8090024 -136192465 + MLT1A1 LTR MaLR 48 286 -79 1144 162 16 0 chr12 8090026 8090217 -136192272 + L1M2 LINE L1 5496 5689 -623 1590 117 0 21 chr12 8090232 8090331 -136192158 + AluSq SINE Alu 39 139 -174 2037 128 0 3 chr12 8090331 8090637 -136191852 + AluSx SINE Alu 1 305 -7 1590 117 0 21 chr12 8090637 8090776 -136191713 + AluSq SINE Alu 139 272 -41 1952 120 13 25 chr12 8090813 8091129 -136191360 + AluSp SINE Alu 1 312 -1 23 54 0 0 chr12 8091145 8091182 -136191307 + AT_rich Low_complexity Low_complexity 1 37 0 408 167 0 0 chr12 8091225 8091297 -136191192 - AluSx SINE Alu -2 310 239 503 108 0 0 chr12 8091425 8091490 -136190999 + pTR5 LTR ERV1 326 390 -2048 1515 155 4 0 chr12 8091490 8091729 -136190760 - AluSx SINE Alu -72 240 1 266 115 0 115 chr12 8091802 8091841 -136190648 - AluSp SINE Alu -131 172 139 2064 142 0 0 chr12 8091841 8092144 -136190345 - AluSx SINE Alu -9 303 1 266 115 0 115 chr12 8092144 8092156 -136190333 - AluSp SINE Alu -164 139 127 2068 116 0 0 chr12 8092180 8092472 -136190017 - AluSg SINE Alu -18 292 1 1636 190 45 25 chr12 8092483 8092836 -136189653 + MLT1B-int LTR MaLR 1371 1730 -5 2113 155 34 16 chr12 8092842 8093223 -136189266 + MLT1B LTR MaLR 1 388 -2 928 298 143 41 chr12 8093224 8093723 -136188766 - L2 LINE L2 -157 3156 2709 849 244 44 131 chr12 8093723 8093878 -136188611 + MSTD LTR MaLR 1 168 -228 1719 113 0 113 chr12 8093878 8094215 -136188274 + AluJo SINE Alu 1 299 -13 849 244 44 131 chr12 8094215 8094453 -136188036 + MSTD LTR MaLR 168 355 -41 2243 94 0 19 chr12 8094453 8094772 -136187717 - AluSq SINE Alu 0 313 1 849 244 44 131 chr12 8094772 8094811 -136187678 + MSTD LTR MaLR 355 396 0 928 298 143 41 chr12 8094811 8095051 -136187438 - L2 LINE L2 -604 2709 2328 3402 123 94 62 chr12 8095205 8095336 -136187153 - L1MC2 LINE L1 -9 6335 6210 197 62 0 31 chr12 8095336 8095368 -136187121 + (TTA)n Simple_repeat Simple_repeat 2 32 0 1867 122 0 0 chr12 8095377 8095647 -136186842 - AluSx SINE Alu -42 270 1 3402 123 94 62 chr12 8095647 8095812 -136186677 - L1MC2 LINE L1 -141 6203 6045 2089 114 10 0 chr12 8095812 8096111 -136186378 + AluSq SINE Alu 1 302 -11 3402 123 94 62 chr12 8096111 8096497 -136185992 - L1MC2 LINE L1 -299 6045 5620 294 29 0 0 chr12 8096521 8096555 -136185934 - U2 snRNA snRNA -152 36 3 2360 80 3 0 chr12 8096802 8097114 -136185375 - AluSp SINE Alu 0 313 1 684 86 11 0 chr12 8097114 8097207 -136185282 - L1MA1 LINE L1 -45 6257 6164 1338 244 81 50 chr12 8098103 8098599 -136183890 - L1ME3 LINE L1 -31 6131 5621 2045 120 3 0 chr12 8098630 8098922 -136183567 - AluSx SINE Alu -19 293 1 264 338 47 37 chr12 8098967 8099199 -136183290 - MIR3 SINE MIR -25 237 6 325 157 100 14 chr12 8099228 8099298 -136183191 - MER81 DNA DNA -3 111 36 497 149 5 234 chr12 8099509 8099584 -136182905 + MER5A DNA MER1_type 2 92 -97 2426 66 0 0 chr12 8099584 8099885 -136182604 + AluY SINE Alu 1 301 -10 497 149 5 234 chr12 8099885 8099896 -136182593 + MER5A DNA MER1_type 92 104 -85 1586 164 4 4 chr12 8099896 8100177 -136182312 + AluJb SINE Alu 1 281 -31 186 43 0 0 chr12 8100182 8100205 -136182284 + (GAAA)n Simple_repeat Simple_repeat 2 24 0 497 149 5 234 chr12 8100205 8100312 -136182177 + MER5A DNA MER1_type 108 156 -33 209 284 45 30 chr12 8100589 8100656 -136181833 - L3 LINE CR1 -431 1146 1079 2306 81 0 0 chr12 8100721 8101017 -136181472 - AluSx SINE Alu -16 296 1 1453 88 0 19 chr12 8101190 8101405 -136181084 + AluSg/x SINE Alu 97 307 -5 448 123 37 12 chr12 8101425 8101506 -136180983 + AluSg/x SINE Alu 215 297 -12 22 0 0 0 chr12 8101594 8101616 -136180873 + AT_rich Low_complexity Low_complexity 1 22 0 1284 132 0 0 chr12 8101640 8101822 -136180667 - AluSx SINE Alu -130 182 1 2161 93 3 13 chr12 8102103 8102416 -136180073 - AluSx SINE Alu 0 312 3 3731 188 46 73 chr12 8102563 8103520 -136178969 - MER21A LTR ERV1 0 931 1 2112 96 4 0 chr12 8103982 8104287 -136178202 - AluSp SINE Alu 0 306 1 1521 165 0 86 chr12 8104401 8104534 -136177955 + AluJo SINE Alu 1 144 -168 1922 148 0 3 chr12 8104534 8104844 -136177645 - AluSx SINE Alu -3 309 1 1521 165 0 86 chr12 8104844 8105049 -136177440 + AluJo SINE Alu 144 310 -2 456 93 0 0 chr12 8105408 8105483 -136177006 + (TCTA)n Simple_repeat Simple_repeat 4 78 0 1617 99 119 0 chr12 8105483 8105736 -136176753 - AluSc SINE Alu -26 283 1 1172 142 31 62 chr12 8105951 8106113 -136176376 + Tigger5 DNA MER2_type 2072 2225 -98 2327 86 3 0 chr12 8106113 8106416 -136176073 - AluSp SINE Alu -9 304 1 1172 142 31 62 chr12 8106416 8106513 -136175976 + Tigger5 DNA MER2_type 2225 2323 0 970 183 83 121 chr12 8106513 8106604 -136175885 + L1ME2 LINE L1 5236 5329 -833 1959 127 0 3 chr12 8106604 8106888 -136175601 + AluSq SINE Alu 1 283 -30 970 183 83 121 chr12 8106888 8107179 -136175310 + L1ME2 LINE L1 5329 5603 -559 831 168 0 8 chr12 8107182 8107313 -136175176 + FLAM_C SINE Alu 1 130 -13 1112 211 21 28 chr12 8107314 8107597 -136174892 + L1ME2 LINE L1 5581 5864 -298 431 19 0 0 chr12 8107605 8107657 -136174832 + AluSq/x SINE Alu 82 133 -179 753 198 46 72 chr12 8107699 8107857 -136174632 + L1ME2 LINE L1 5871 6023 -141 1997 139 0 10 chr12 8107857 8108167 -136174322 + AluSx SINE Alu 1 307 -5 753 198 46 72 chr12 8108167 8108245 -136174244 + L1ME2 LINE L1 6023 6101 -63 2201 196 70 15 chr12 8108483 8108953 -136173536 - MLT1D LTR MaLR -2 503 8 1880 135 10 0 chr12 8108953 8109256 -136173233 - AluSx SINE Alu -6 306 1 2304 87 0 0 chr12 8109677 8109975 -136172514 + AluSq SINE Alu 1 298 -15 2330 80 0 3 chr12 8110294 8110596 -136171893 + AluSq SINE Alu 1 301 -12 186 43 0 0 chr12 8110639 8110662 -136171827 + (CAAAA)n Simple_repeat Simple_repeat 3 25 0 486 0 0 0 chr12 8111082 8111136 -136171353 + (TG)n Simple_repeat Simple_repeat 2 55 0 2134 110 0 0 chr12 8111291 8111590 -136170899 + AluSx SINE Alu 1 299 -13 687 188 0 43 chr12 8111828 8111966 -136170523 - FLAM_C SINE Alu -1 132 1 1697 143 49 0 chr12 8111969 8112256 -136170233 - AluJo SINE Alu -11 301 1 273 325 121 24 chr12 8112439 8112645 -136169844 - L2 LINE L2 -496 2818 2593 2110 108 7 0 chr12 8112734 8113031 -136169458 + AluSp SINE Alu 1 299 -14 780 273 47 17 chr12 8113930 8114238 -136168251 + L2 LINE L2 2739 3070 -243 2161 107 0 16 chr12 8114281 8114589 -136167900 - AluSx SINE Alu -9 303 1 1589 168 23 23 chr12 8114592 8114783 -136167706 - AluJo SINE Alu -2 310 117 192 40 0 0 chr12 8114783 8114808 -136167681 + (TTTTG)n Simple_repeat Simple_repeat 2 26 0 1589 168 23 23 chr12 8114808 8114926 -136167563 - AluJo SINE Alu -194 118 1 362 21 21 0 chr12 8115361 8115408 -136167081 + (TCTA)n Simple_repeat Simple_repeat 3 50 0 2108 125 8 64 chr12 8115456 8115663 -136166826 - L1PA16 LINE L1 -3 6163 5987 2215 80 0 41 chr12 8115663 8115977 -136166512 - AluY SINE Alu -10 301 1 2108 125 8 64 chr12 8115977 8116161 -136166328 - L1PA16 LINE L1 -179 5987 5794 1932 109 20 7 chr12 8116170 8116464 -136166025 - AluSx SINE Alu -14 298 1 662 90 0 10 chr12 8116475 8116575 -136165914 + (TTCC)n Simple_repeat Simple_repeat 1 99 0 2087 107 3 0 chr12 8116575 8116865 -136165624 - AluSg SINE Alu -19 291 1 2347 77 0 0 chr12 8116891 8117201 -136165288 - AluY SINE Alu -1 310 1 996 113 0 134 chr12 8117202 8117440 -136165049 - L1MC/D LINE L1 -628 5614 5409 198 0 0 0 chr12 8117493 8117515 -136164974 + (TG)n Simple_repeat Simple_repeat 1 22 0 270 56 0 0 chr12 8117530 8117566 -136164923 + (TA)n Simple_repeat Simple_repeat 2 37 0 2502 65 3 0 chr12 8117566 8117876 -136164613 - AluSp SINE Alu -2 311 1 23 33 0 0 chr12 8117876 8117906 -136164583 + AT_rich Low_complexity Low_complexity 1 30 0 1937 109 60 0 chr12 8117917 8118201 -136164288 - AluSp SINE Alu -12 301 1 1900 135 0 0 chr12 8118525 8118854 -136163635 + AluSx SINE Alu 1 329 0 32 43 0 0 chr12 8118959 8119005 -136163484 + AT_rich Low_complexity Low_complexity 1 46 0 1522 180 0 11 chr12 8119006 8119290 -136163199 - AluJb SINE Alu -23 289 9 353 75 19 0 chr12 8119807 8119860 -136162629 + (CA)n Simple_repeat Simple_repeat 2 55 0 710 335 11 27 chr12 8120073 8120336 -136162153 - MIR SINE MIR -2 260 2 788 164 0 8 chr12 8120751 8120885 -136161604 + FLAM_C SINE Alu 1 133 0 1386 213 37 0 chr12 8120902 8121178 -136161311 - AluJo SINE Alu -30 282 5 2288 97 10 13 chr12 8121352 8121660 -136160829 - AluSx SINE Alu -5 307 1 2305 93 3 7 chr12 8121662 8121962 -136160527 - AluSq SINE Alu -14 299 1 1143 99 0 47 chr12 8122344 8122516 -136159973 + FRAM SINE Alu 1 163 -13 203 306 0 0 chr12 8122532 8122594 -136159895 + CT-rich Low_complexity Low_complexity 4 65 0 706 204 8 0 chr12 8123263 8123395 -136159094 + FLAM_A SINE Alu 1 133 0 2201 110 0 7 chr12 8123659 8123979 -136158510 + AluSg SINE Alu 1 310 0 21 0 0 0 chr12 8124199 8124220 -136158269 + AT_rich Low_complexity Low_complexity 1 21 0 1581 175 50 27 chr12 8124631 8124767 -136157722 + AluJo SINE Alu 1 132 -180 2473 25 0 7 chr12 8124767 8125091 -136157398 + AluY SINE Alu 1 322 0 1581 175 50 27 chr12 8125091 8125250 -136157239 + AluJo SINE Alu 132 304 -8 2474 51 10 0 chr12 8125259 8125555 -136156934 - AluY SINE Alu -12 299 1 695 215 126 0 chr12 8126017 8126152 -136156337 + FRAM SINE Alu 1 151 -25 871 150 23 0 chr12 8126155 8126288 -136156201 + AluJo SINE Alu 1 136 -176 197 62 0 31 chr12 8126293 8126325 -136156164 + (CAAA)n Simple_repeat Simple_repeat 1 31 0 199 175 16 16 chr12 8126428 8126462 -136156027 + (TTA)n Simple_repeat Simple_repeat 1 37 -26 886 212 0 41 chr12 8126462 8126632 -136155857 - FAM SINE Alu -12 163 1 199 175 16 16 chr12 8126632 8126660 -136155829 + (TTA)n Simple_repeat Simple_repeat 36 63 0 1893 142 0 41 chr12 8126772 8127088 -136155401 + AluJb SINE Alu 1 303 -9 23 0 0 0 chr12 8127132 8127155 -136155334 + AT_rich Low_complexity Low_complexity 1 23 0 1740 198 3 15 chr12 8127430 8127754 -136154735 - MLT1F LTR MaLR -25 517 198 831 159 0 0 chr12 8127773 8127899 -136154590 - FLAM_C SINE Alu -17 126 1 721 267 5 26 chr12 8127899 8128090 -136154399 - MLT1F LTR MaLR -341 201 15 462 74 12 86 chr12 8128252 8128333 -136154156 + MER52C LTR ERV1 952 1026 -252 * 816 155 115 104 chr12 8128332 8128524 -136153965 - LTR56 LTR ERV1 -164 281 84 2543 58 0 3 chr12 8128524 8128833 -136153656 - AluY SINE Alu -3 308 1 816 155 115 104 chr12 8128833 8128918 -136153571 - LTR56 LTR ERV1 -361 84 1 2326 89 0 0 chr12 8129094 8129385 -136153104 + AluSq SINE Alu 1 291 -22 185 0 40 0 chr12 8129389 8129414 -136153075 + (TAAA)n Simple_repeat Simple_repeat 4 29 0 341 214 0 125 chr12 8129422 8129534 -136152955 + MER61E LTR ERV1 4 101 -468 536 141 0 0 chr12 8130247 8130325 -136152164 + MSTB LTR MaLR 1 78 -348 2993 179 60 24 chr12 8130326 8130941 -136151548 - LTR9B LTR ERV1 -1 643 7 1280 213 2 11 chr12 8130941 8131214 -136151275 - HUERS-P3 LTR ERV1 0 8919 7158 792 178 26 36 chr12 8131518 8131727 -136150762 - HUERS-P3b LTR ERV1 -551 4329 1860 304 170 7 185 chr12 8131699 8131783 -136150706 - HUERS-P3b LTR ERV1 -462 6956 6903 * 2383 81 3 3 chr12 8131783 8132081 -136150408 - AluSp SINE Alu -15 298 1 304 170 7 185 chr12 8132081 8132131 -136150358 - HUERS-P3b LTR ERV1 -515 6903 6846 * 4209 190 37 5 chr12 8132121 8132869 -136149620 - HUERS-P3b LTR ERV1 -1986 6933 6162 * 4497 108 39 20 chr12 8132854 8133307 -136149182 - HUERS-P3b LTR ERV1 -3342 5577 5105 2334 77 10 0 chr12 8133307 8133607 -136148882 - AluY SINE Alu -8 303 1 4497 108 39 20 chr12 8133607 8133817 -136148672 - HUERS-P3b LTR ERV1 -3814 5105 4901 821 217 7 0 chr12 8133818 8133961 -136148528 - HUERS-P3b LTR ERV1 -4237 4682 4539 7647 150 33 14 chr12 8133964 8135034 -136147455 - HUERS-P3b LTR ERV1 -5314 2104 1834 2308 97 0 0 chr12 8135034 8135322 -136147167 - AluSc SINE Alu -21 288 1 7647 150 33 14 chr12 8135322 8135865 -136146624 - HUERS-P3b LTR ERV1 -5584 1834 1303 4217 145 155 27 chr12 8135873 8137233 -136145256 - pTR5 LTR ERV1 0 2438 741 2729 158 87 31 chr12 8137232 8137599 -136144890 - HUERS-P3b LTR ERV1 -7597 1322 912 * 2058 129 7 0 chr12 8137599 8137885 -136144604 - AluSg SINE Alu -22 288 1 2729 158 87 31 chr12 8137885 8138066 -136144423 - HUERS-P3b LTR ERV1 -8007 912 743 677 168 85 16 chr12 8138089 8138246 -136144243 - HUERS-P3b LTR ERV1 -6859 559 412 285 157 14 86 chr12 8138230 8138300 -136144189 - HUERS-P3b LTR ERV1 -8821 98 34 * 3010 168 76 25 chr12 8138324 8138931 -136143558 - LTR9B LTR ERV1 0 644 7 1570 159 159 3 chr12 8138940 8139242 -136143247 + MSTB LTR MaLR 78 426 0 271 62 0 42 chr12 8139499 8139547 -136142942 + (TAAAG)n Simple_repeat Simple_repeat 2 47 0 2121 130 0 0 chr12 8139610 8139903 -136142586 - AluSg SINE Alu -15 295 3 1751 327 74 26 chr12 8139903 8140298 -136142191 - L2 LINE L2 -293 3020 2645 6008 63 20 14 chr12 8140298 8140740 -136141749 + MER4E LTR ERV1 1 450 -316 2306 105 0 0 chr12 8140740 8141034 -136141455 - AluSx SINE Alu -18 294 1 6008 63 20 14 chr12 8141034 8141349 -136141140 + MER4E LTR ERV1 450 762 -4 1751 327 74 26 chr12 8141349 8141942 -136140547 - L2 LINE L2 -668 2645 1988 2373 76 0 28 chr12 8142236 8142553 -136139936 - AluY SINE Alu -2 309 2 2555 77 21 0 chr12 8142556 8142882 -136139607 - L1PA13 LINE L1 -4 6159 5827 631 211 0 8 chr12 8142882 8143003 -136139486 + L1MA4 LINE L1 6169 6300 0 265 359 98 38 chr12 8143257 8143544 -136138945 - L2 LINE L2 -4 3268 2965 7805 171 37 9 chr12 8143546 8145610 -136136879 + L1PB4 LINE L1 3710 5842 -314 2405 88 16 0 chr12 8145610 8145915 -136136574 + AluSx SINE Alu 1 310 -2 7805 171 37 9 chr12 8145915 8146131 -136136358 + L1PB4 LINE L1 5842 6051 -105 271 125 21 0 chr12 8146147 8146195 -136136294 + L1PA16 LINE L1 6101 6149 -17 250 352 117 20 chr12 8146195 8146391 -136136098 - L2 LINE L2 -186 3086 2872 1204 251 78 6 chr12 8146494 8146853 -136135636 + L1MC4a LINE L1 5538 5922 -1886 2456 81 3 0 chr12 8147350 8147657 -136134832 - AluSc SINE Alu -1 308 1 632 153 178 31 chr12 8147830 8147993 -136134496 + MER53 DNA DNA 1 187 -2 618 95 0 0 chr12 8148099 8148194 -136134295 + (CGG)n Simple_repeat Simple_repeat 3 97 0 391 289 0 0 chr12 8148487 8148577 -136133912 - MIR SINE MIR -126 136 47 1155 108 0 0 chr12 8148578 8148744 -136133745 + AluSg/x SINE Alu 137 302 -10 294 120 100 0 chr12 8148744 8148794 -136133695 + Alu SINE Alu 236 290 -12 321 304 104 52 chr12 8149421 8149671 -136132818 + L1MEd LINE L1 961 1223 -4896 1155 218 97 7 chr12 8149756 8150236 -136132253 + L1ME LINE L1 5040 5557 -609 2168 97 3 17 chr12 8151048 8151346 -136131143 + AluSx SINE Alu 13 306 -6 3107 90 42 2 chr12 8151400 8151948 -136130541 + PABL_A LTR ERV1 1 655 -5 1144 283 70 15 chr12 8152520 8152990 -136129499 - L1ME3A LINE L1 -1 6169 5674 700 140 0 0 chr12 8152993 8153093 -136129396 - LTR12 LTR ERV1 0 714 615 312 253 10 10 chr12 8153096 8153195 -136129294 - LTR30 LTR ERV1 -80 642 544 1238 109 153 52 chr12 8153200 8153448 -136129041 - LTR12 LTR ERV1 -441 273 1 933 239 60 28 chr12 8153455 8153834 -136128655 - L1ME3A LINE L1 -612 5552 5156 2026 126 49 0 chr12 8153834 8154119 -136128370 + AluSq SINE Alu 1 299 -14 933 239 60 28 chr12 8154119 8154265 -136128224 - L1ME3A LINE L1 -1008 5156 5016 3423 208 80 6 chr12 8154272 8155178 -136127311 - L1ME1 LINE L1 -3 6163 5195 249 159 0 0 chr12 8156162 8156206 -136126283 + L1PA10 LINE L1 6121 6164 -4 39 22 0 0 chr12 8156585 8156631 -136125858 + AT_rich Low_complexity Low_complexity 1 46 0 2363 95 0 3 chr12 8158039 8158344 -136124145 - AluSg SINE Alu -6 304 1 270 295 91 39 chr12 8158430 8158658 -136123831 - L1ME LINE L1 -403 5759 5519 324 228 38 156 chr12 8158871 8159160 -136123329 + MER112 DNA MER1_type 1 255 -5 38 61 0 0 chr12 8159181 8159247 -136123242 + AT_rich Low_complexity Low_complexity 1 66 0 1535 128 173 0 chr12 8160202 8160451 -136122038 + AluSg SINE Alu 3 294 -16 802 256 106 8 chr12 8160507 8160752 -136121737 - MER82 DNA MER2_type 0 653 385 453 58 4 29 chr12 8160752 8160835 -136121654 - MLT2A1 LTR ERVL 0 453 368 1271 92 52 0 chr12 8160951 8161125 -136121364 - MLT2A1 LTR ERVL -40 404 222 1130 201 14 5 chr12 8161126 8161335 -136121154 - MER82 DNA MER2_type -264 389 179 1658 185 71 3 chr12 8161355 8161707 -136120782 - L1MA9 LINE L1 -1 6311 5936 893 110 43 0 chr12 8161711 8161875 -136120614 + CT-rich Low_complexity Low_complexity 1 171 0 746 134 8 0 chr12 8161875 8162002 -136120487 + (TCCC)n Simple_repeat Simple_repeat 4 131 0 1394 109 0 5 chr12 8162004 8162196 -136120293 - AluSg/x SINE Alu -40 270 80 17628 214 26 17 chr12 8162264 8163252 -136119237 - L1P4 LINE L1 -466 6350 5373 186 71 0 0 chr12 8163252 8163280 -136119209 + (TAAA)n Simple_repeat Simple_repeat 2 29 0 17628 214 26 17 chr12 8163280 8164243 -136118246 - L1P4 LINE L1 -1443 5373 4420 546 70 0 93 chr12 8164243 8164276 -136118213 + MADE1 DNA Mariner 1 35 -45 1954 149 14 0 chr12 8164276 8164289 -136118200 - AluSx SINE Alu -13 299 288 708 64 0 0 chr12 8164289 8164383 -136118106 + (TTCC)n Simple_repeat Simple_repeat 3 96 0 1954 149 14 0 chr12 8164383 8164664 -136117825 - AluSx SINE Alu -24 288 1 546 70 0 93 chr12 8164664 8164716 -136117773 + MADE1 DNA Mariner 35 78 -2 17628 214 26 17 chr12 8164716 8165495 -136116994 - L1P4 LINE L1 -2396 4420 3650 2378 93 0 10 chr12 8165495 8165796 -136116693 - AluSc SINE Alu -11 298 1 17628 214 26 17 chr12 8165796 8168583 -136113906 - L1P4 LINE L1 -3166 3650 775 2384 158 80 22 chr12 8168579 8168717 -136113772 - L1P4 LINE L1 -380 5786 5658 * 1762 85 0 5 chr12 8168717 8168941 -136113548 - AluY SINE Alu -9 302 80 2384 158 80 22 chr12 8168941 8169264 -136113225 - L1P4 LINE L1 -508 5658 5298 835 138 0 0 chr12 8170050 8170173 -136112316 - AluSp/q SINE Alu -12 301 179 1530 132 0 9 chr12 8170173 8170392 -136112097 - AluSx SINE Alu -93 219 3 398 130 0 26 chr12 8170797 8170874 -136111615 + (TTTC)n Simple_repeat Simple_repeat 2 76 0 1377 331 8 15 chr12 8171016 8171608 -136110881 - MER21A-int LTR ERV1 -128 6521 5934 711 291 49 61 chr12 8172616 8173236 -136109253 - MER21A-int LTR ERV1 -729 7056 3365 349 314 8 8 chr12 8173639 8173763 -136108726 - MER21A-int LTR ERV1 -3744 3152 3029 2086 153 0 0 chr12 8173942 8174243 -136108246 - AluSx SINE Alu -11 301 1 206 265 0 0 chr12 8174247 8174296 -136108193 + T-rich Low_complexity Low_complexity 1 49 0 2396 342 29 31 chr12 8174305 8176373 -136106116 - MER21A-int LTR ERV1 -2029 5756 2864 362 341 0 0 chr12 8176386 8176521 -136105968 - MER21A-int LTR ERV1 -4160 3625 3491 32178 113 12 53 chr12 8176545 8182955 -136099534 - L1PA7 LINE L1 0 6154 12 1715 323 41 36 chr12 8183276 8185281 -136097208 - MER21A-int LTR ERV1 -4395 3390 954 207 0 0 0 chr12 8185651 8185674 -136096815 + (TCTCCC)n Simple_repeat Simple_repeat 1 23 0 8285 20 1 320 chr12 8185679 8187710 -136094779 + SVA Other Other 2 1383 -3 280 310 82 6 chr12 8188007 8188178 -136094311 - MER21A-int LTR ERV1 -6279 370 187 12026 247 21 21 chr12 8188794 8192303 -136090186 - L1P LINE L1 -950 5196 1686 2224 122 10 124 chr12 8192316 8192823 -136089666 - LTR10A LTR ERV1 -160 449 1 359 299 0 0 chr12 8193005 8193102 -136089387 - L1PA12 LINE L1 -5399 1446 1350 550 354 23 34 chr12 8193350 8193835 -136088654 - L1M2 LINE L1 -6317 521 3 2798 199 41 26 chr12 8193837 8194910 -136087579 - MER21A-int LTR ERV1 -2565 4193 163 280 167 42 0 chr12 8194930 8194978 -136087511 - MER21A-int LTR ERV1 -4141 50 1 2225 198 22 86 chr12 8195012 8195893 -136086596 - MER21A LTR ERV1 -17 914 1 349 323 19 19 chr12 8195897 8196079 -136086410 - L1M3de LINE L1 -5038 1615 1434 2452 78 0 0 chr12 8196230 8196526 -136085963 - AluY SINE Alu -14 297 2 3543 84 63 6 chr12 8196555 8197045 -136085444 - MER11A LTR ERVK -748 518 1 2105 215 0 35 chr12 8197046 8197535 -136084954 + L1 LINE L1 2398 2869 -3277 2335 114 47 33 chr12 8197558 8197917 -136084572 + THE1B LTR MaLR 1 364 0 2286 152 3 8 chr12 8197917 8198280 -136084209 + L1PB3 LINE L1 5794 6154 0 418 276 10 0 chr12 8198330 8198428 -136084061 + ERVL LTR ERVL 2186 2284 -3480 298 161 0 0 chr12 8198575 8198631 -136083858 - L1MB8 LINE L1 0 6178 6123 * 850 177 25 0 chr12 8198630 8198788 -136083701 + L1 LINE L1 3652 3813 -2333 720 215 71 11 chr12 8199122 8199498 -136082991 - L1MB8 LINE L1 -42 6136 5677 * 1320 291 63 30 chr12 8199497 8200368 -136082121 - L1M4c LINE L1 -3451 2931 2021 880 224 14 14 chr12 8200381 8200595 -136081894 - L1MB8 LINE L1 -1366 4780 4567 * 2236 203 35 18 chr12 8200593 8201319 -136081170 - L1MCb LINE L1 -4851 1194 600 1416 239 82 72 chr12 8201306 8201900 -136080589 - L1MCb LINE L1 -5821 743 144 * 2146 113 0 26 chr12 8202125 8202436 -136080053 - AluSc SINE Alu -6 303 1 561 272 75 8 chr12 8202665 8202904 -136079585 - Tigger8 DNA MER2_type -200 466 212 369 0 0 0 chr12 8204122 8204163 -136078326 + (CA)n Simple_repeat Simple_repeat 2 42 0 3611 113 19 2 chr12 8204348 8204869 -136077620 - L1MA1 LINE L1 0 6302 5773 408 293 108 81 chr12 8205455 8206206 -136076283 - HAL1 LINE L1 -681 1826 1056 4754 196 33 37 chr12 8207314 8208801 -136073688 - L1MA9 LINE L1 -36 6276 4793 2293 98 3 13 chr12 8208801 8209116 -136073373 - AluSx SINE Alu 0 312 1 4754 196 33 37 chr12 8209116 8209311 -136073178 - L1MA9 LINE L1 -1519 4793 4599 2767 114 5 18 chr12 8210996 8211389 -136071100 - L1PA8A LINE L1 -13 6118 5731 11471 41 6 0 chr12 8211476 8213561 -136068928 - L1PA5 LINE L1 0 6154 4064 2174 107 0 0 chr12 8213716 8214020 -136068469 + AluSg SINE Alu 1 304 0 21 36 0 0 chr12 8214986 8215014 -136067475 + AT_rich Low_complexity Low_complexity 1 28 0 2231 107 3 0 chr12 8216454 8216752 -136065737 + AluSq SINE Alu 1 299 -14 879 140 48 131 chr12 8216961 8217060 -136065429 + MER2 DNA MER2_type 1 72 -273 2221 108 0 0 chr12 8217060 8217346 -136065143 + AluSc SINE Alu 3 288 -21 879 140 48 131 chr12 8217346 8217475 -136065014 + MER2 DNA MER2_type 72 210 -135 2377 57 3 13 chr12 8217581 8217881 -136064608 + AluY SINE Alu 1 297 -14 1000 166 25 0 chr12 8217883 8218040 -136064449 + AluJb SINE Alu 136 296 -16 433 255 59 0 chr12 8218101 8218203 -136064286 - FLAM_A SINE Alu -30 112 5 1956 131 7 0 chr12 8218239 8218530 -136063959 - AluSx SINE Alu -19 293 1 1996 146 0 0 chr12 8218653 8218947 -136063542 + AluSp SINE Alu 1 294 -19 900 146 0 0 chr12 8218947 8219077 -136063412 + AluJo/FRAM SINE Alu 134 263 -49 1613 156 0 77 chr12 8219115 8219441 -136063048 + AluJo SINE Alu 12 312 0 22 70 0 0 chr12 8219466 8219509 -136062980 + AT_rich Low_complexity Low_complexity 1 43 0 2451 73 0 13 chr12 8219513 8219828 -136062661 + AluY SINE Alu 1 311 0 225 0 0 0 chr12 8219880 8219905 -136062584 + (T)n Simple_repeat Simple_repeat 1 25 0 2386 76 0 13 chr12 8220010 8220314 -136062175 + AluY SINE Alu 1 300 -11 316 300 131 38 chr12 8220338 8220628 -136061861 + L1ME LINE L1 319 635 -5435 2200 67 3 63 chr12 8220999 8221314 -136061175 + AluSc SINE Alu 1 296 -13 206 323 73 10 chr12 8221748 8221844 -136060645 - L2 LINE L2 -516 2798 2697 186 0 0 39 chr12 8222220 8222246 -136060243 + (TTTTG)n Simple_repeat Simple_repeat 1 175 0 1798 140 4 4 chr12 8222246 8222525 -136059964 - AluSg SINE Alu -1 304 1 228 247 53 113 chr12 8222526 8222625 -136059864 - L1MC/D LINE L1 -1982 5826 5737 2113 112 10 0 chr12 8222625 8222929 -136059560 + AluSc SINE Alu 1 307 -2 228 247 53 113 chr12 8222929 8222979 -136059510 - L1MC/D LINE L1 -2071 5737 5686 193 244 186 35 chr12 8223129 8223215 -136059274 - MIR SINE MIR -111 151 53 1736 163 0 19 chr12 8223223 8223536 -136058953 - AluSx SINE Alu -5 307 1 1664 180 3 3 chr12 8223538 8223844 -136058645 - AluJb SINE Alu -6 306 1 2074 118 0 16 chr12 8224053 8224368 -136058121 - AluSg SINE Alu 0 310 1 1623 186 3 6 chr12 8224601 8224913 -136057576 - AluJo SINE Alu 0 312 2 372 220 96 0 chr12 8225086 8225192 -136057297 + L1MC4 LINE L1 6699 6795 -1166 1129 127 0 0 chr12 8225226 8225392 -136057097 + AluSq SINE Alu 130 295 -18 2106 82 4 4 chr12 8225392 8225706 -136056783 + AluSg SINE Alu 1 314 0 422 211 0 0 chr12 8225783 8225854 -136056635 + AluJ/FLAM SINE Alu 2 72 -230 1107 132 0 17 chr12 8225854 8226028 -136056461 - AluSq SINE Alu -142 171 1 1194 109 77 0 chr12 8226313 8226496 -136055993 + AluSg/x SINE Alu 103 299 -13 1997 111 11 0 chr12 8226496 8226803 -136055686 + AluSg SINE Alu 1 310 0 1256 171 0 38 chr12 8226969 8227208 -136055281 - AluJo SINE Alu -82 230 1 289 304 51 65 chr12 8227511 8227649 -136054840 + MIR SINE MIR 5 140 -122 1574 174 0 15 chr12 8227660 8227930 -136054559 + AluJo SINE Alu 1 266 -46 220 84 189 32 chr12 8227934 8228029 -136054460 + (TTTAA)n Simple_repeat Simple_repeat 1 110 0 1849 140 0 10 chr12 8228040 8228340 -136054149 + AluSq SINE Alu 1 297 -16 700 88 10 0 chr12 8228348 8228450 -136054039 + HY1 scRNA scRNA 3 105 -7 2037 117 10 0 chr12 8228574 8228864 -136053625 - AluSg SINE Alu -17 293 1 1870 133 30 0 chr12 8228932 8229234 -136053255 - AluSx SINE Alu -1 311 1 1683 152 28 0 chr12 8230430 8230719 -136051770 - AluSx SINE Alu -15 297 1 1418 217 14 0 chr12 8230862 8231157 -136051332 + AluJb SINE Alu 1 299 -13 1909 151 7 3 chr12 8231157 8231456 -136051033 + AluSq SINE Alu 1 300 -13 2000 111 7 3 chr12 8231460 8231749 -136050740 + AluSx SINE Alu 3 292 -20 2230 94 10 3 chr12 8231754 8232062 -136050427 + AluSg SINE Alu 1 310 0 1011 149 0 12 chr12 8232481 8232693 -136049796 - AluSq SINE Alu 0 329 120 2384 50 0 3 chr12 8233192 8233493 -136048996 + AluY SINE Alu 1 300 -11 1440 181 17 13 chr12 8234441 8234739 -136047750 + AluJb SINE Alu 1 299 -13 1560 110 0 13 chr12 8234769 8234996 -136047493 + AluSq SINE Alu 1 224 -89 445 114 0 0 chr12 8235051 8235121 -136047368 + Alu SINE Alu 239 308 -3 1989 109 10 14 chr12 8236135 8236429 -136046060 - AluSp SINE Alu -20 293 1 1976 111 17 3 chr12 8236619 8236916 -136045573 + AluSx SINE Alu 1 301 -11 27 0 0 0 chr12 8237025 8237052 -136045437 + AT_rich Low_complexity Low_complexity 1 27 0 1612 153 0 8 chr12 8237448 8237716 -136044773 + AluSx SINE Alu 46 311 -1 1428 216 10 10 chr12 8237769 8238065 -136044424 + AluJb SINE Alu 2 297 -5 21 0 0 0 chr12 8239679 8239700 -136042789 + AT_rich Low_complexity Low_complexity 1 21 0 2036 113 0 0 chr12 8239706 8239998 -136042491 + AluSx SINE Alu 1 292 -20 2036 115 0 16 chr12 8241272 8241576 -136040913 + AluSx SINE Alu 1 299 -13 1622 90 0 0 chr12 8241923 8242135 -136040354 + MER41A LTR ERV1 1 212 -342 257 138 0 17 chr12 8242280 8242338 -136040151 + (TCTA)n Simple_repeat Simple_repeat 3 59 0 244 241 12 72 chr12 8242347 8242376 -136040113 + L2 LINE L2 3188 3217 -96 2222 84 3 7 chr12 8242376 8242674 -136039815 - AluSq SINE Alu -11 302 6 244 241 12 72 chr12 8242674 8242727 -136039762 + L2 LINE L2 3217 3265 -48 553 218 81 0 chr12 8242742 8242866 -136039623 + MER5A DNA MER1_type 28 161 -28 2196 95 7 10 chr12 8243336 8243642 -136038847 + AluSp SINE Alu 1 305 -8 593 152 10 0 chr12 8244310 8244409 -136038080 + HY1 scRNA scRNA 12 111 -1 1652 93 0 40 chr12 8244557 8244804 -136037685 + AluSg SINE Alu 1 237 -73 1830 117 18 0 chr12 8244837 8245110 -136037379 + AluSg SINE Alu 1 278 -32 868 100 6 25 chr12 8245110 8245270 -136037219 + (GAAA)n Simple_repeat Simple_repeat 1 157 0 488 213 50 100 chr12 8245274 8245335 -136037154 + MER58 DNA MER1_type 19 82 -2338 2341 75 7 0 chr12 8245335 8245642 -136036847 - AluSx SINE Alu -3 309 1 488 213 50 100 chr12 8245642 8245740 -136036749 + MER58 DNA MER1_type 81 170 -2250 186 43 0 0 chr12 8245748 8245771 -136036718 + (TTTTC)n Simple_repeat Simple_repeat 3 25 0 2063 120 3 0 chr12 8245788 8246097 -136036392 + AluSx SINE Alu 1 310 -2 22 0 0 0 chr12 8246217 8246239 -136036250 + GC_rich Low_complexity Low_complexity 1 22 0 28 29 0 0 chr12 8246690 8246725 -136035764 + AT_rich Low_complexity Low_complexity 1 35 0 1911 97 14 4 chr12 8247143 8247444 -136035045 + AluSg SINE Alu 1 304 0 771 171 0 0 chr12 8247723 8247852 -136034637 + AluJo/FLAM SINE Alu 3 131 -171 290 161 18 0 chr12 8247854 8247910 -136034579 + Alu SINE Alu 245 301 -1 330 306 69 35 chr12 8247922 8248066 -136034423 - MIR SINE MIR -77 185 37 442 189 33 0 chr12 8248420 8248510 -136033979 + L1MC3 LINE L1 7476 7568 -217 2032 98 20 3 chr12 8248518 8248814 -136033675 + AluSx SINE Alu 1 301 -11 334 171 24 12 chr12 8248928 8249010 -136033479 + L1MC3 LINE L1 7608 7690 -95 1919 115 25 0 chr12 8249013 8249291 -136033198 + AluSc SINE Alu 1 285 -24 2069 114 0 7 chr12 8249317 8249614 -136032875 + AluSq SINE Alu 1 295 -18 368 134 31 26 chr12 8249621 8249844 -136032645 + AluJo SINE Alu 3 301 0 314 119 0 0 chr12 8249920 8249962 -136032527 + Alu SINE Alu 1 42 -260 870 184 0 0 chr12 8250013 8250160 -136032329 + FRAM SINE Alu 1 142 -34 996 115 6 0 chr12 8250160 8250317 -136032172 - AluSg/x SINE Alu 0 310 153 334 171 24 12 chr12 8250528 8250610 -136031879 + L1MC3 LINE L1 7608 7690 -95 2042 116 10 0 chr12 8250613 8250907 -136031582 + AluSg SINE Alu 1 297 -13 2103 95 3 10 chr12 8250909 8251203 -136031286 + AluSg SINE Alu 3 294 -16 194 299 30 15 chr12 8251268 8251335 -136031154 + L3 LINE CR1 1079 1146 -431 25 0 0 0 chr12 8251504 8251529 -136030960 + AT_rich Low_complexity Low_complexity 1 25 0 879 108 0 15 chr12 8252195 8252325 -136030164 - AluSg/x SINE Alu -102 208 81 2325 73 0 7 chr12 8252325 8252626 -136029863 - AluY SINE Alu -12 299 1 23 0 0 0 chr12 8252911 8252934 -136029555 + AT_rich Low_complexity Low_complexity 1 23 0 1941 108 3 3 chr12 8252934 8253220 -136029269 - AluSx SINE Alu -24 288 3 198 0 0 0 chr12 8253399 8253421 -136029068 + (TTA)n Simple_repeat Simple_repeat 2 23 0 1573 164 4 7 chr12 8253423 8253704 -136028785 - AluSx SINE Alu -30 282 3 554 92 255 0 chr12 8253704 8253802 -136028687 - Tigger7 DNA MER2_type -610 123 1 1887 101 4 0 chr12 8253825 8254092 -136028397 - AluSp SINE Alu -24 289 22 197 62 0 31 chr12 8254577 8254609 -136027880 + (TTA)n Simple_repeat Simple_repeat 2 32 0 1883 103 4 0 chr12 8254620 8254882 -136027607 - AluSx SINE Alu -44 268 6 553 218 81 0 chr12 8254950 8255074 -136027415 + MER5A DNA MER1_type 28 161 -28 2073 118 3 0 chr12 8255771 8256068 -136026421 + AluSx SINE Alu 1 298 -14 815 277 7 17 chr12 8256076 8256376 -136026113 + AluSg SINE Alu 3 299 -1 2209 112 0 0 chr12 8256953 8257256 -136025233 + AluSq SINE Alu 1 303 -10 23 0 0 0 chr12 8257517 8257540 -136024949 + GC_rich Low_complexity Low_complexity 1 23 0 1204 124 5 11 chr12 8258163 8258349 -136024140 - AluSx SINE Alu -127 185 1 304 309 81 37 chr12 8258354 8258490 -136023999 - HAL1 LINE L1 -178 2329 2188 195 139 0 0 chr12 8258494 8258530 -136023959 + (T)n Simple_repeat Simple_repeat 1 36 0 21 0 0 0 chr12 8258654 8258675 -136023814 + GC_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr12 8258811 8258832 -136023657 + AT_rich Low_complexity Low_complexity 1 21 0 23 0 0 0 chr12 8259041 8259064 -136023425 + AT_rich Low_complexity Low_complexity 1 23 0 458 185 0 0 chr12 8309266 8309347 -135973142 + L1ME LINE L1 5628 5708 -462 2167 94 0 0 chr12 8309383 8309670 -135972819 + AluSg SINE Alu 1 287 -23 213 108 0 0 chr12 8309670 8309707 -135972782 + (TA)n Simple_repeat Simple_repeat 1 37 0 322 266 85 60 chr12 8309707 8310071 -135972418 + L1MC5 LINE L1 5667 7752 -159 325 224 67 29 chr12 8309793 8309966 -135972523 - L1MC4 LINE L1 -1339 6983 1941 311 227 39 86 chr12 8309997 8310125 -135972364 - L1MC4 LINE L1 -4363 2063 1942 * 347 245 40 44 chr12 8310102 8310249 -135972240 + L1MC4 LINE L1 1941 6976 -1346 1718 149 0 0 chr12 8310253 8310521 -135971968 + AluSx SINE Alu 37 304 -8 1226 184 13 92 chr12 8310525 8310682 -135971807 + MLT1A1 LTR MaLR 1 169 -196 2031 114 0 10 chr12 8310682 8310979 -135971510 + AluSx SINE Alu 1 294 -18 2125 114 3 10 chr12 8310988 8311296 -135971193 + AluSx SINE Alu 1 306 -6 1226 184 13 92 chr12 8311296 8311433 -135971056 + MLT1A1 LTR MaLR 177 281 -84 1686 133 19 4 chr12 8311438 8311708 -135970781 + L1M2 LINE L1 5493 5766 -546 408 176 15 0 chr12 8311782 8311850 -135970639 + AluJo SINE Alu 117 185 -117 492 185 131 8 chr12 8311858 8311988 -135970501 - L1MA9 LINE L1 -365 5947 5802 2157 100 20 0 chr12 8311988 8312289 -135970200 - AluSx SINE Alu -5 307 1 544 213 0 0 chr12 8312311 8312405 -135970084 - AluJb SINE Alu -23 289 196 1789 161 3 0 chr12 8312417 8312715 -135969774 - AluSq SINE Alu -13 300 2 1785 141 47 10 chr12 8312733 8313032 -135969457 - AluSg SINE Alu 0 310 1 1999 136 0 0 chr12 8313035 8313337 -135969152 - AluSq SINE Alu -6 307 6 1422 138 0 0 chr12 8313340 8313550 -135968939 - AluSq SINE Alu -103 210 1 2091 114 0 0 chr12 8313688 8313996 -135968493 + AluSg SINE Alu 1 308 -2 1525 86 53 16 chr12 8314000 8314245 -135968244 - LTR61 LTR ERV1 -341 254 1 377 159 0 0 chr12 8314245 8314308 -135968181 + FLAM SINE Alu 63 125 -8 299 170 0 0 chr12 8314338 8314391 -135968098 + Alu SINE Alu 245 297 -5 2030 125 0 7 chr12 8314391 8314695 -135967794 + AluSq SINE Alu 1 302 -11 1701 155 17 3 chr12 8314714 8315010 -135967479 + AluSx SINE Alu 1 300 -12 2151 91 10 0 chr12 8315012 8315309 -135967180 + AluSp SINE Alu 1 300 -13 210 154 0 0 chr12 8315319 8315358 -135967131 + A-rich Low_complexity Low_complexity 4 42 0 827 103 0 8 chr12 8315362 8315479 -135967010 + AluSg/x SINE Alu 177 292 -18 1026 114 0 0 chr12 8315538 8315678 -135966811 + AluSc SINE Alu 1 140 -169 225 94 0 0 chr12 8315682 8315714 -135966775 + (A)n Simple_repeat Simple_repeat 1 32 0 1030 90 0 0 chr12 8315716 8315849 -135966640 + AluSg SINE Alu 1 133 -177 1655 96 8 4 chr12 8315849 8316089 -135966400 + AluSq SINE Alu 1 241 -72 4689 141 31 33 chr12 8316089 8317463 -135965026 + pTR5 LTR ERV1 743 2438 0 320 161 0 16 chr12 8317466 8317528 -135964961 + AluSq SINE Alu 238 298 -4 1653 153 11 14 chr12 8317550 8317832 -135964657 + AluSx SINE Alu 9 289 -23 1866 147 0 13 chr12 8317920 8318227 -135964262 + AluSg SINE Alu 1 303 -7 2281 93 3 0 chr12 8318251 8318561 -135963928 - AluY SINE Alu 0 311 1 2008 104 40 0 chr12 8318581 8318878 -135963611 - AluY SINE Alu -2 309 1 2216 74 11 0 chr12 8318908 8319215 -135963274 - AluY SINE Alu 0 310 1 24 32 0 0 chr12 8319363 8319394 -135963095 + AT_rich Low_complexity Low_complexity 1 31 0 626 143 0 0 chr12 8319407 8319505 -135962984 - HY1 scRNA scRNA -1 111 14 1950 108 21 0 chr12 8320184 8320471 -135962018 + AluSq SINE Alu 1 293 -20 186 43 0 0 chr12 8320668 8320691 -135961798 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 291 211 28 0 chr12 8320695 8320766 -135961723 - MER5A DNA MER1_type -40 149 77 1214 121 0 0 chr12 8320968 8321142 -135961347 - AluSg/x SINE Alu 0 309 136 1476 167 21 11 chr12 8321147 8321337 -135961152 - AluJo SINE Alu 0 312 117 432 0 0 0 chr12 8321337 8321385 -135961104 + (TTTA)n Simple_repeat Simple_repeat 2 49 0 1476 167 21 11 chr12 8321385 8321475 -135961014 - AluJo SINE Alu -195 117 29 2444 62 0 0 chr12 8321903 8322207 -135960282 - AluSx SINE Alu -8 304 1 503 250 91 0 chr12 8322315 8322447 -135960042 - MER5A DNA MER1_type -28 161 18 251 253 12 96 chr12 8322452 8322535 -135959954 - L2 LINE L2 -48 3265 3190 646 33 11 11 chr12 8322535 8322625 -135959864 + (TAGA)n Simple_repeat Simple_repeat 3 92 0 570 308 98 37 chr12 8322698 8323136 -135959353 + L2 LINE L2 2548 3009 -304 191 222 0 0 chr12 8323453 8323489 -135959000 - L2 LINE L2 -765 2549 2514 2366 82 0 3 chr12 8323513 8323818 -135958671 + AluSc SINE Alu 1 304 -5 3877 96 12 50 chr12 8324061 8324229 -135958260 - MER41A LTR ERV1 0 554 381 2101 97 10 7 chr12 8324229 8324528 -135957961 - AluSp SINE Alu -13 300 1 2213 82 0 0 chr12 8324538 8324818 -135957671 - AluSq SINE Alu -20 293 14 3877 96 12 50 chr12 8324818 8325214 -135957275 - MER41A LTR ERV1 -182 372 1 198 257 146 21 chr12 8325407 8325551 -135956938 + L2 LINE L2 3044 3205 -108 2090 96 6 19 chr12 8326295 8326609 -135955880 - AluSx SINE Alu -2 310 1 2213 97 0 0 chr12 8326663 8326963 -135955526 - AluY SINE Alu -11 300 1 2483 40 0 7 chr12 8328031 8328328 -135954161 + AluY SINE Alu 1 295 -16 2045 93 10 10 chr12 8329100 8329400 -135953089 + AluSx SINE Alu 1 300 -12 2087 122 0 6 chr12 8329413 8329724 -135952765 + AluSx SINE Alu 1 309 -3 1701 152 0 35 chr12 8329733 8329931 -135952558 + AluSx SINE Alu 1 185 -127 2269 84 3 0 chr12 8329931 8330228 -135952261 - AluSp SINE Alu -12 301 4 1701 152 0 35 chr12 8330228 8330344 -135952145 + AluSx SINE Alu 185 304 -8 1677 116 135 4 chr12 8330916 8331183 -135951306 - AluSx SINE Alu 0 302 1 2339 87 0 0 chr12 8332079 8332389 -135950100 + AluSx SINE Alu 1 310 -2 1287 186 25 68 chr12 8332545 8332722 -135949767 - AluJb SINE Alu -3 309 151 2267 42 0 62 chr12 8332722 8333031 -135949458 - AluY SINE Alu -14 297 8 1287 186 25 68 chr12 8333031 8333176 -135949313 - AluJb SINE Alu -161 151 1 22 0 0 0 chr12 8333219 8333241 -135949248 + AT_rich Low_complexity Low_complexity 1 22 0 1850 78 114 14 chr12 8334242 8334523 -135947966 + AluSc SINE Alu 1 309 0 1329 108 5 0 chr12 8334613 8334798 -135947691 + AluSq SINE Alu 1 186 -127 361 167 0 0 chr12 8334800 8334866 -135947623 + AluS SINE Alu 232 297 -5 589 165 25 25 chr12 8335212 8335333 -135947156 + FLAM_A SINE Alu 1 121 -21 480 122 0 4 chr12 8335352 8335557 -135946932 + AluSx SINE Alu 1 274 -35 * 563 130 0 0 chr12 8335552 8335629 -135946860 - AluS SINE Alu -234 78 2 1825 161 7 3 chr12 8336358 8336663 -135945826 + AluSx SINE Alu 1 306 -6 2145 123 0 0 chr12 8336665 8336975 -135945514 - AluSg SINE Alu 0 310 1 2258 95 3 0 chr12 8336978 8337284 -135945205 - AluSc SINE Alu -2 307 1 1838 114 32 4 chr12 8337537 8337818 -135944671 - AluSp SINE Alu -21 292 4 1809 128 24 14 chr12 8337820 8338109 -135944380 - AluSx SINE Alu -16 296 5 189 0 0 0 chr12 8338113 8338134 -135944355 + (T)n Simple_repeat Simple_repeat 1 21 0 632 109 11 0 chr12 8338438 8338530 -135943959 + AluSp/q SINE Alu 215 307 -6 * 824 204 0 0 chr12 8338524 8338666 -135943823 - AluJb SINE Alu -31 281 140 1943 101 73 0 chr12 8338673 8338961 -135943528 - AluSq SINE Alu -4 309 1 2204 76 0 20 chr12 8339118 8339420 -135943069 - AluSx SINE Alu -16 296 1 2105 112 3 0 chr12 8339467 8339763 -135942726 - AluSp SINE Alu -16 297 1 2104 92 0 7 chr12 8339769 8340062 -135942427 - AluSg SINE Alu -19 291 1 1950 122 10 10 chr12 8341598 8341893 -135940596 - AluSg SINE Alu -15 295 1 1360 185 68 43 chr12 8341953 8342234 -135940255 - AluJb SINE Alu -11 291 4 2030 125 0 3 chr12 8342434 8342739 -135939750 - AluSg SINE Alu -6 304 1 2117 94 0 0 chr12 8342876 8343163 -135939326 - AluSx SINE Alu -15 297 11 1815 141 7 10 chr12 8343223 8343513 -135938976 + AluSx SINE Alu 1 289 -23 1195 139 0 0 chr12 8343531 8343718 -135938771 + AluSq SINE Alu 123 309 -4 1783 130 4 0 chr12 8343905 8344166 -135938323 + AluSx SINE Alu 1 262 -50 21 0 0 0 chr12 8344173 8344194 -135938295 + AT_rich Low_complexity Low_complexity 1 21 0 1879 113 34 20 chr12 8344194 8344486 -135938003 + AluSx SINE Alu 2 297 -15 1571 109 0 28 chr12 8344486 8344734 -135937755 + AluSp SINE Alu 73 313 0 439 95 0 0 chr12 8344749 8344812 -135937677 - MER41B LTR ERV1 -92 543 481 2348 204 8 22 chr12 8344817 8344934 -135937555 + L1MB7 LINE L1 5555 5672 -512 3541 70 7 11 chr12 8344934 8345389 -135937100 + MLT2A2 LTR ERVL 1 453 0 2348 204 8 22 chr12 8345389 8345495 -135936994 + L1MB7 LINE L1 5672 5778 -406 1932 145 3 0 chr12 8345495 8345791 -135936698 + AluSx SINE Alu 1 297 -15 2348 204 8 22 chr12 8345791 8346057 -135936432 + L1MB7 LINE L1 5778 6038 -146 2004 135 0 22 chr12 8346060 8346378 -135936111 - AluSx SINE Alu -1 311 1 29 0 0 0 chr12 8346480 8346509 -135935980 + AT_rich Low_complexity Low_complexity 1 29 0 340 307 73 39 chr12 8346509 8346681 -135935808 - L1MEc LINE L1 -3947 2477 2257 2310 74 0 3 chr12 8346681 8346977 -135935512 + AluSp SINE Alu 1 295 -18 787 177 0 0 chr12 8346991 8347115 -135935374 + FLAM_A SINE Alu 11 134 -8 1437 122 0 0 chr12 8347210 8347415 -135935074 - AluSx SINE Alu -103 209 5 216 0 0 0 chr12 8347430 8347454 -135935035 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 2036 113 3 0 chr12 8347456 8347738 -135934751 - AluSq SINE Alu -30 283 1 818 167 0 0 chr12 8347738 8347870 -135934619 - AluJo/FLAM SINE Alu -170 132 1 572 357 13 21 chr12 8347890 8348128 -135934361 - L1MEc LINE L1 -5463 909 674 2372 49 0 0 chr12 8348309 8348617 -135933872 - AluY SINE Alu 0 308 1 2120 86 7 0 chr12 8348718 8349008 -135933481 - AluSp SINE Alu -16 297 6 407 310 14 28 chr12 8349169 8349385 -135933104 - L1MC4a LINE L1 -1860 5948 5736 2369 67 0 13 chr12 8349388 8349700 -135932789 - AluY SINE Alu -3 308 1 1889 131 7 3 chr12 8349721 8350012 -135932477 - AluJb SINE Alu -20 292 1 540 197 30 23 chr12 8350025 8350157 -135932332 - L1MB8 LINE L1 -170 6008 5876 1112 131 6 0 chr12 8350157 8350333 -135932156 - AluSg/x SINE Alu -6 304 128 2217 64 0 42 chr12 8350355 8350668 -135931821 + AluSp SINE Alu 1 300 -13 198 103 0 0 chr12 8350977 8351006 -135931483 + (CCCCCT)n Simple_repeat Simple_repeat 2 30 0 539 201 42 74 chr12 8351641 8351697 -135930792 + LTR41 LTR ERVL 1 57 -716 2440 45 0 19 chr12 8351697 8352006 -135930483 - AluY SINE Alu -8 303 1 539 201 42 74 chr12 8352006 8352138 -135930351 + LTR41 LTR ERVL 57 183 -590 226 329 14 0 chr12 8352361 8352434 -135930055 + LTR41 LTR ERVL 511 584 -189 1934 88 49 14 chr12 8352511 8352795 -135929694 - AluSq SINE Alu -19 294 1 1699 154 35 0 chr12 8352894 8353180 -135929309 + AluSq SINE Alu 1 296 -17 353 236 122 24 chr12 8353265 8353388 -135929101 - L2 LINE L2 -493 2821 2687 2164 112 0 3 chr12 8353388 8353692 -135928797 + AluSq SINE Alu 1 303 -10 2245 78 0 3 chr12 8353811 8354104 -135928385 - AluSp SINE Alu -21 292 1 2051 88 32 0 chr12 8354497 8354781 -135927708 - AluSg SINE Alu -17 293 1 540 98 49 0 chr12 8355901 8355983 -135926506 + L1PA8 LINE L1 6086 6171 -1 687 134 0 0 chr12 8356982 8357079 -135925410 + AluJ/FLAM SINE Alu 2 98 -214 1436 148 12 136 chr12 8357097 8357435 -135925054 - AluSq SINE Alu -7 296 1 391 161 123 0 chr12 8357435 8357516 -135924973 - Tigger7 DNA MER2_type -2366 121 31 1718 139 64 4 chr12 8357533 8357814 -135924675 - AluSx SINE Alu -14 298 1 913 206 9 138 chr12 8358235 8358447 -135924042 - AluSx SINE Alu -8 304 153 1582 138 4 4 chr12 8358447 8358694 -135923795 + AluSx SINE Alu 46 292 -20 913 206 9 138 chr12 8358694 8358830 -135923659 - AluSx SINE Alu -159 153 1 2110 110 3 0 chr12 8358839 8359138 -135923351 - AluSp SINE Alu -13 300 1 3748 188 38 77 chr12 8359701 8360665 -135921824 + MER21A LTR ERV1 1 927 -4 1812 128 4 0 chr12 8361187 8361461 -135921028 - AluSx SINE Alu -37 275 1